BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter asiaticus str. psy62] (223 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|75674664|ref|YP_317085.1| peptidase S24 [Nitrobacter winogradskyi Nb-255] gi|74419534|gb|ABA03733.1| peptidase S24 [Nitrobacter winogradskyi Nb-255] Length = 210 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 98/223 (43%), Positives = 135/223 (60%), Gaps = 13/223 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H +IW A+DR+AER L+PSGLAR+AGLDPT+FNKSKR +GR RWPSTES+ K Sbjct: 1 MVMLTHAQIWTALDRLAERAGLSPSGLARRAGLDPTTFNKSKRITSDGRERWPSTESVAK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 LAAT I + TE+ K +PLL F +G+GG+FD G FP G W+ VG+ Sbjct: 61 ALAATGTAIDTFVQFIE----DTERAAKAVPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + SM P YR GD+++++ + GDR+++K R G++ Sbjct: 117 P---------CVNDEHAYALEISGDSMKPAYRDGDVIVVSPGTPIRRGDRVVVKTRDGEV 167 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K L R R+I+L SLN + T+ S++EWIARI+WASQ Sbjct: 168 MVKELKRRTARTIELQSLNPSHANRTLPASEVEWIARIVWASQ 210 >gi|85713691|ref|ZP_01044681.1| peptidase S24 [Nitrobacter sp. Nb-311A] gi|85699595|gb|EAQ37462.1| peptidase S24 [Nitrobacter sp. Nb-311A] Length = 210 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 137/223 (61%), Gaps = 13/223 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H +IW A+DR+AER L+PSGLAR+AGLDPT+FNKSKR +GR RWPSTES+ K Sbjct: 1 MVMLTHAQIWTALDRLAERAGLSPSGLARRAGLDPTTFNKSKRITSDGRERWPSTESVAK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 LAAT+ I + + + + +PLL F +G+GG+FD G FP G W+ VG+ Sbjct: 61 ALAATDTAIDTFVQFIE----DSARAAQAVPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + H + SM P YR GD+++++ + GDR+++K R G++ Sbjct: 117 PAVNDEH---------AYALEISGDSMKPAYRDGDVIVVSPGTPIRRGDRVVVKTRDGEV 167 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K L R ++I+L SLN + T+ SD+EWIARI+WASQ Sbjct: 168 MVKELKRRTAKTIELQSLNPSHANRTLPASDVEWIARIVWASQ 210 >gi|144899439|emb|CAM76303.1| Peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense MSR-1] Length = 212 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 9/221 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +H IW A+D +A + LT S LAR+AGLDPT+FNKSKR EG+ RWPSTES+ K+L Sbjct: 1 MLTHADIWAALDSLARDNGLTASALARRAGLDPTTFNKSKRITREGKLRWPSTESVAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AT ++ QLL+ K IPL+ +G G+FD +P G W+ + PE Sbjct: 61 DATGSSLGQLLNYIDDSLPAPVVKGATIPLIGSAQAGDRGYFDDAGYPCGGGWDEIPFPE 120 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM PLYR GDI+I++ A V GDR+++K G+++ Sbjct: 121 VGD---------SNAYALEVSGDSMEPLYRDGDIVIVSPAASVRRGDRVVVKTLEGEVMV 171 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K LI + + I+L SLN +P ++ ++ W+ARILWASQ Sbjct: 172 KQLIRQTAKRIELASLNPAHPGRSLAAEEVSWLARILWASQ 212 >gi|39933872|ref|NP_946148.1| S24 family peptidase [Rhodopseudomonas palustris CGA009] gi|192289291|ref|YP_001989896.1| phage repressor [Rhodopseudomonas palustris TIE-1] gi|39647719|emb|CAE26239.1| Peptidase family S24 [Rhodopseudomonas palustris CGA009] gi|192283040|gb|ACE99420.1| putative phage repressor [Rhodopseudomonas palustris TIE-1] Length = 210 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 97/223 (43%), Positives = 135/223 (60%), Gaps = 13/223 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K Sbjct: 1 MQMLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L ATN I + L + + +PLL +GSGG+FD G FP G W+ VG+ Sbjct: 61 ALQATNTAIDTFVQLIHDRP----RVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGL 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P I H + SM P YR GDI++++ + V+ GDR+++K G++ Sbjct: 117 PSITDEH---------AYALEISGDSMKPAYRSGDIVVVSPSATVHRGDRVVVKTTKGEV 167 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K L R + ++L SLN +P T+ S+IEWI RI+WASQ Sbjct: 168 MVKELKRRTAKVVELASLNPSHPDRTLAPSEIEWIGRIVWASQ 210 >gi|13474687|ref|NP_106256.1| repressor protein CI [Mesorhizobium loti MAFF303099] gi|14025442|dbj|BAB52042.1| repressor protein CI [Mesorhizobium loti MAFF303099] Length = 212 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 95/221 (42%), Positives = 135/221 (61%), Gaps = 9/221 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH ++W AID +AER++L+ SGLAR+AGLD T+FNKSKR +GR RWPSTES+ KI+ Sbjct: 1 MLSHDRVWAAIDALAERYSLSASGLARRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKII 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AT ++ + L T + +PLL F +G+GGFFD FP G W+ V +P Sbjct: 61 EATGASLDEFTGLIEGRMSTAPAHRRSVPLLGFAQAGAGGFFDDAGFPAGQGWDLVELPA 120 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + Q SMLPLYR GD+LI+ GDR+++K +G+++A Sbjct: 121 QSTE---------SSYALQVQGDSMLPLYRNGDVLIVEPGAVTRKGDRVVVKTTSGEVMA 171 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 KVL + +SI L+SLN +P + M ++EW+ARI+WASQ Sbjct: 172 KVLDRQTVKSIALVSLNPDHPDRDIPMREVEWVARIVWASQ 212 >gi|316932334|ref|YP_004107316.1| putative phage repressor [Rhodopseudomonas palustris DX-1] gi|315600048|gb|ADU42583.1| putative phage repressor [Rhodopseudomonas palustris DX-1] Length = 210 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 13/223 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K Sbjct: 1 MQMLTHDQIWTALDRLAERSGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L ATN I + L + + +PLL +GSGG+FD G FP G W +G+ Sbjct: 61 ALQATNTAIDTFVQLIHDRP----RVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWEEIGL 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P I H + SM P YR GDI++++ + V+ GDR+++K G++ Sbjct: 117 PSISDEH---------AYALQISGDSMKPAYRHGDIVVVSPSAAVHRGDRVVVKTTKGEV 167 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K L R + I+L SLN +P T+ S++EWI RI+WASQ Sbjct: 168 MVKELKRRTAKVIELASLNPSHPDRTLAPSEVEWIGRIVWASQ 210 >gi|92116178|ref|YP_575907.1| putative phage repressor [Nitrobacter hamburgensis X14] gi|91799072|gb|ABE61447.1| putative phage repressor [Nitrobacter hamburgensis X14] Length = 210 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 98/223 (43%), Positives = 136/223 (60%), Gaps = 13/223 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H +IW A+DR+AER L+PSGLARKAGLDPT+FNKSKR +GR RWPSTES+ K Sbjct: 1 MAMLTHAQIWTALDRLAERSGLSPSGLARKAGLDPTTFNKSKRITGDGRERWPSTESVAK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 LAAT+ I + T + + +PLL F +G+GG+FD G FP G W+ VG+ Sbjct: 61 ALAATDTAIDTFVQFIE----DTARATQAVPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + H + SM P YR GD+++++ + GDR+++K R G++ Sbjct: 117 PSVHDEH---------AYALEISGDSMKPAYRDGDVIVVSPGTSIRRGDRVVVKTRDGEV 167 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K L R + I+L SLN + T+ SD+EWIARI+WASQ Sbjct: 168 MVKELKRRTAKMIELQSLNPNHVNRTLAASDVEWIARIVWASQ 210 >gi|239834343|ref|ZP_04682671.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] gi|239822406|gb|EEQ93975.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] Length = 227 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 133/228 (58%), Gaps = 14/228 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K Sbjct: 9 MTMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYASDGRARWPSTESLAK 68 Query: 61 ILAATNETICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++ AT T + + + IPLL +G+GG+FD FP G W Sbjct: 69 VMEATGSTFDEFTRLIGGETRTPQFGEYTQDMQSIPLLGMAEAGAGGYFDDAGFPAGQGW 128 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + V P + SMLPLYR GD LI+ + GDR++++ Sbjct: 129 DIVEFPASTGEG---------VYALEVSGDSMLPLYRDGDTLIVAPNTAIRRGDRVVVRT 179 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + G+++AK+L + R+I+L SLN +P E DIEW+ARILWASQ Sbjct: 180 KDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESRDIEWVARILWASQ 227 >gi|90422277|ref|YP_530647.1| putative phage repressor [Rhodopseudomonas palustris BisB18] gi|90104291|gb|ABD86328.1| putative phage repressor [Rhodopseudomonas palustris BisB18] Length = 208 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 92/221 (41%), Positives = 136/221 (61%), Gaps = 13/221 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +H +IW A+DR+AER L+PSGLA+++GLDPT+FNKSKR +GR RWPSTES+ K L Sbjct: 1 MLTHDQIWTALDRLAERAGLSPSGLAKRSGLDPTTFNKSKRITNDGRERWPSTESVAKAL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AATN +D + + +PLL +GSGG+FD G FP G W+ VG+P Sbjct: 61 AATN----TAIDAFVQLIGDGPRAVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGLPS 116 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + H + SM P YR GD+++++ + GDR+++K R G+++ Sbjct: 117 VNDEH---------AYALEISGDSMKPAYRAGDVIVVSPGSPIRRGDRVVVKTRDGEVMV 167 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K L R ++++L+SLN +P T+ +++EWIARI+WASQ Sbjct: 168 KELKRRTAKTLELLSLNPSHPDRTLAPAEVEWIARIVWASQ 208 >gi|299134039|ref|ZP_07027232.1| putative phage repressor [Afipia sp. 1NLS2] gi|298590786|gb|EFI50988.1| putative phage repressor [Afipia sp. 1NLS2] Length = 207 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 93/221 (42%), Positives = 135/221 (61%), Gaps = 14/221 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +H +IW A+DR+A R L+PSGLA++AGLDPT+FNKSKR +GR RWPSTES+ K L Sbjct: 1 MLTHDQIWTALDRLAARAGLSPSGLAKRAGLDPTTFNKSKRVTSDGRERWPSTESVAKAL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AAT ++ + + + ++PLL F +GSGG+FD G FP G W+ VG+P Sbjct: 61 AATGISVDTFVHFIE-----SSSRSVQVPLLGFAEAGSGGYFDDGGFPVGKGWDEVGLPS 115 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + H + SM P YR GD+++++ + + GDR+++K + G+++ Sbjct: 116 VNDEH---------AYALEISGDSMKPAYRDGDVIVVSPSAPIRRGDRVVVKTKDGEVMV 166 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K L R + I+L SLN + T+ S+IEWIARILWASQ Sbjct: 167 KELRRRTQKVIELQSLNPAHSDRTLPTSEIEWIARILWASQ 207 >gi|115522745|ref|YP_779656.1| putative phage repressor [Rhodopseudomonas palustris BisA53] gi|115516692|gb|ABJ04676.1| putative phage repressor [Rhodopseudomonas palustris BisA53] Length = 208 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 13/221 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K L Sbjct: 1 MLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAKAL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AATN +D + + +PLL F +G+GG+FD G FP G W+ VG+P+ Sbjct: 61 AATN----TAIDSFVRLIGDRARPVQSVPLLGFAQAGAGGYFDDGGFPVGKGWDEVGLPQ 116 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + H + SM P YR GD+++++ V GDR+++K G+++ Sbjct: 117 VNDEH---------AYALEISGDSMKPAYRAGDVIVVSPGTPVRRGDRVVVKTNNGEVMV 167 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K L R ++++L SLN +P T+ +D+EWIARI+WASQ Sbjct: 168 KELKRRTSKTLELASLNPSHPDRTLAPADVEWIARIVWASQ 208 >gi|319785581|ref|YP_004145057.1| peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171469|gb|ADV15007.1| Peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 216 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 135/225 (60%), Gaps = 13/225 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH ++W AID +AER++L+ SGLA++AGLD T+FNKSKR +GR RWPSTES+ KI+ Sbjct: 1 MLSHDRVWAAIDALAERYSLSASGLAKRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKIM 60 Query: 63 AATNETICQLLDLPFSD----GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 AT ++ + L + + +PLL F +G+GGFFD FP G W+ + Sbjct: 61 EATGASLDEFTGLIEGRAGASHAASVARRSSVPLLGFAQAGAGGFFDDAGFPAGQGWDLI 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + Q SMLPLYR GD+LI+ GDR+++K +G Sbjct: 121 ELPTQSTE---------SSYALQVQGDSMLPLYRNGDVLIVEPGAVTRKGDRVVVKTTSG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++AKVL + RSI L+SLN +P + M D+EW+ARI+WASQ Sbjct: 172 EVMAKVLERQTVRSIALVSLNPDHPDRDIPMRDVEWVARIVWASQ 216 >gi|153011349|ref|YP_001372563.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] gi|151563237|gb|ABS16734.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] Length = 217 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 95/226 (42%), Positives = 131/226 (57%), Gaps = 14/226 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++ Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYASDGRARWPSTESLAKVM 60 Query: 63 AATNETICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 AT T + + + IPLL +G+GG+FD FP G W+ Sbjct: 61 EATGSTFDEFTRLIRGGNRTPQFGEYTQDMQSIPLLGMAEAGAGGYFDDAGFPAGQGWDI 120 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 V P + SMLPLYR GD LI+ + GDR++++ + Sbjct: 121 VEFPAGSGEG---------VYALEVSGDSMLPLYRDGDTLIVAPNTAIRRGDRVVVRTKD 171 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+++AK+L + R+I+L SLN +P E DIEW+ARILWASQ Sbjct: 172 GEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWVARILWASQ 217 >gi|288957020|ref|YP_003447361.1| hypothetical protein AZL_001790 [Azospirillum sp. B510] gi|288909328|dbj|BAI70817.1| hypothetical protein AZL_001790 [Azospirillum sp. B510] Length = 210 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 133/221 (60%), Gaps = 11/221 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H IW AIDR+A +H L+ SGLAR+AGLDPT+FNKSKR +G+ RWPSTESI K+L Sbjct: 1 MLKHTDIWRAIDRLAAQHGLSASGLARRAGLDPTTFNKSKRTTNDGKLRWPSTESISKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AT ++ + + L + +P++ + +GS G+FD FP G+ W+ + P Sbjct: 61 DATGASLSEFVSLVGD--GAGTGPLQRVPVIGYAQAGSAGYFDDAGFPAGSGWDELLFPS 118 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + PH + SM P+YR GD +I++ A Q+ DR++++ + G+++A Sbjct: 119 LGDPH---------AYALEISGDSMEPVYRDGDTIIVSPAAQIRRNDRVVVRTKGGEVMA 169 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K LI I+L+S+N +P ++ ++D+ W+ARI+WASQ Sbjct: 170 KQLIRETATKIELLSINRAHPDRSIPLADVAWMARIIWASQ 210 >gi|154250891|ref|YP_001411715.1| putative phage repressor [Parvibaculum lavamentivorans DS-1] gi|154154841|gb|ABS62058.1| putative phage repressor [Parvibaculum lavamentivorans DS-1] Length = 214 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 11/224 (4%) Query: 1 MT-SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M SH ++W AID +A RH LT SGLA+ AGLDPT+FNKSKR GR RWP+TES+ Sbjct: 1 MPRKLSHNRLWAAIDALAGRHGLTASGLAKAAGLDPTTFNKSKRVTAAGRPRWPNTESLA 60 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL AT ++ + + +DG ++ +PL+ +G GGFFD FP G+ W V Sbjct: 61 RILDATGSSL-EDFLVLVADGEVAFTPQRHVPLIGLAQAGRGGFFDDAGFPVGSGWEEVA 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + H + SM P YR GDI++++ ++ GDR+++K + Sbjct: 120 FPDFKDEH---------AYALEVSGDSMEPFYRAGDIIVVSPGAEIRRGDRVVVKTAGDE 170 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++AKVL + IDL SLN Y +++ +I W+ARI+WASQ Sbjct: 171 VMAKVLARKTATRIDLQSLNPAYEDRSLKPEEIVWMARIIWASQ 214 >gi|260461922|ref|ZP_05810167.1| putative phage repressor [Mesorhizobium opportunistum WSM2075] gi|259032169|gb|EEW33435.1| putative phage repressor [Mesorhizobium opportunistum WSM2075] Length = 216 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 134/225 (59%), Gaps = 13/225 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH ++W AID +AER++L+ SGLAR+AGLD T+FNKSKR +GR RWPSTES+ KI+ Sbjct: 1 MLSHDRVWAAIDALAERYSLSASGLARRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKII 60 Query: 63 AATNETICQLLDLPFSDGRTTEK----KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 AT ++ + L + + +PLL F +G+GGFFD FP G W+ V Sbjct: 61 EATGASLDEFTGLIEGRAGLVHDARDGRRRSVPLLGFAQAGAGGFFDDAGFPAGQGWDLV 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + Q SMLPLYR GD+LI+ GDR+++K G Sbjct: 121 ELPAQSTE---------SSYALQVQGDSMLPLYRNGDVLIVEPGAATRKGDRVVVKTTAG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++AKVL + +SI L+SLN +P + M ++EW+ARI+WASQ Sbjct: 172 EVMAKVLERQTVKSISLVSLNPDHPDRDISMREVEWVARIVWASQ 216 >gi|15887830|ref|NP_353511.1| bacteriophage repressor protein C1 [Agrobacterium tumefaciens str. C58] gi|15155410|gb|AAK86296.1| bacteriophage repressor protein C1 [Agrobacterium tumefaciens str. C58] Length = 216 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 110/223 (49%), Positives = 146/223 (65%), Gaps = 9/223 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH+ IW AID +AERH LTPS LA++AGLDPTSFNKSKRFG +GR RWPSTES+ K+L Sbjct: 1 MLSHETIWSAIDTLAERHQLTPSALAKRAGLDPTSFNKSKRFGPDGRKRWPSTESVSKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 AT ++ Q F +T + + PLL F +GSGGFFD G FP G W+ V Sbjct: 61 EATGASVDQFFGYAFGRAQTMQPSGADNAIPLLGFAQAGSGGFFDDGGFPAGQGWDVVEF 120 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P G+YA++ Q SM+PLYR GDILI+ V GDR+++K R G++ Sbjct: 121 PSSPERKQGVYALE-------VQGESMMPLYRDGDILIVEPGAPVRRGDRVVLKSRDGEV 173 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +AKVL + ++I+L+SLN +P + +M+D+EWIARI+WASQ Sbjct: 174 MAKVLARQSPKNIELLSLNPEHPNRSFDMADVEWIARIIWASQ 216 >gi|227820746|ref|YP_002824716.1| putative peptidase, S24 family [Sinorhizobium fredii NGR234] gi|227339745|gb|ACP23963.1| putative peptidase, S24 family [Sinorhizobium fredii NGR234] Length = 217 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 107/224 (47%), Positives = 140/224 (62%), Gaps = 10/224 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR +GR+RWPSTESI K+L Sbjct: 1 MLSHDSIWRAIDALAERHQLSPSGLARRAGLDPTSFNKSKRQSPDGRDRWPSTESISKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 AT TI Q + L S + + IPL+ F +G+GGFFD G FP G W+ V Sbjct: 61 EATGATIDQFMALLQSGSGPSSRTGLPAAGIPLIGFAQAGAGGFFDDGGFPVGQGWDEVD 120 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + Q SMLPLYR GD+LI++ V GDR+++K G+ Sbjct: 121 FPVAA-------QSKASVYALEVQGDSMLPLYRDGDVLIVDPGASVRRGDRVVLKSCEGE 173 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++AK+L + R ++L+SLN +P + EM D+EWIARI+WASQ Sbjct: 174 VMAKILARQTSRGVELLSLNPDHPNRSFEMKDVEWIARIVWASQ 217 >gi|325291874|ref|YP_004277738.1| bacteriophage repressor protein C1 [Agrobacterium sp. H13-3] gi|325059727|gb|ADY63418.1| bacteriophage repressor protein C1 [Agrobacterium sp. H13-3] Length = 216 Score = 204 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 109/223 (48%), Positives = 146/223 (65%), Gaps = 9/223 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH+ IW AID +A+RH LTPS LA++AGLD TSFNKSKRFG +GR RWPSTES+ K+L Sbjct: 1 MLSHETIWSAIDTLAKRHQLTPSALAKRAGLDSTSFNKSKRFGPDGRKRWPSTESVSKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 AT ++ Q F +T + + PLL F +GSGGFFD G FP G W+ V Sbjct: 61 EATGASVDQFFGYAFGRTQTMQPSGADNAIPLLGFAQAGSGGFFDDGGFPAGQGWDVVEF 120 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P G+YA++ Q SM+PLYR GDILI+ QV GDR+++K R G++ Sbjct: 121 PSSPERKQGVYALE-------VQGESMMPLYRDGDILIVEPGAQVRRGDRVVLKSRDGEV 173 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +AKVL + ++I+L+SLN +P + +M+D+EWIARI+WASQ Sbjct: 174 MAKVLARQSPKNIELLSLNPEHPNRSFDMADVEWIARIIWASQ 216 >gi|323135593|ref|ZP_08070676.1| putative phage repressor [Methylocystis sp. ATCC 49242] gi|322398684|gb|EFY01203.1| putative phage repressor [Methylocystis sp. ATCC 49242] Length = 213 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 94/224 (41%), Positives = 134/224 (59%), Gaps = 12/224 (5%) Query: 1 MTS-FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 MT SH +IW A+D + ER+ LTPSGLARKAGLDPT+FN+SKR GR RWPSTESI Sbjct: 1 MTDILSHAQIWAALDALGERYGLTPSGLARKAGLDPTTFNRSKRETASGRQRWPSTESIA 60 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K+L AT ++ + + L ++ ++ ++ PL+ +G+GGFFD F G W+ + Sbjct: 61 KVLQATGASLDEFMALVSAN--SSACRKHTRPLIGLAQAGAGGFFDDAGFAIGAGWDEID 118 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 V H + SM PLYR GD++I++ A V GDR+++K G+ Sbjct: 119 VLADADEH---------SYALEISGDSMFPLYRDGDVVIVSPAAPVRRGDRVVVKTTDGE 169 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 I+AK L + R+++L S+N YP + ++ WIARILWASQ Sbjct: 170 IMAKELKRQTARTVELRSINPAYPDRVIPREEVSWIARILWASQ 213 >gi|296446773|ref|ZP_06888712.1| putative phage repressor [Methylosinus trichosporium OB3b] gi|296255776|gb|EFH02864.1| putative phage repressor [Methylosinus trichosporium OB3b] Length = 213 Score = 203 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 11/220 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +H +IW A+D + ER+ LTPSGLARKAGLDPT+FN+SKR +G RWPSTESI K+L Sbjct: 5 LTHAQIWAALDALGERYGLTPSGLARKAGLDPTTFNRSKRQTADGHLRWPSTESIAKVLQ 64 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 AT + + + L S G + + PL+ +G GGFFD F G W + V Sbjct: 65 ATGAGLDEFMTLVSSKGARPSRSAR--PLIGLAQAGVGGFFDDAGFAIGAGWEEIDVLAD 122 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 H + SM PLYR GDI+I++ + V GDR+++K G+I+AK Sbjct: 123 TDEH---------SYALEISGDSMAPLYRDGDIVIVSPSAPVRRGDRVVVKTIAGEILAK 173 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 L + ++++L SLN +P + ++ W+ARILWASQ Sbjct: 174 ELKRQTAKTVELKSLNPAFPDRVLPKEEVSWMARILWASQ 213 >gi|15964281|ref|NP_384634.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307307018|ref|ZP_07586757.1| putative phage repressor [Sinorhizobium meliloti BL225C] gi|307320672|ref|ZP_07600085.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|15073458|emb|CAC45100.1| Transcriptional regulator [Sinorhizobium meliloti 1021] gi|306893707|gb|EFN24480.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306901958|gb|EFN32557.1| putative phage repressor [Sinorhizobium meliloti BL225C] Length = 218 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 111/225 (49%), Positives = 146/225 (64%), Gaps = 11/225 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR +GR+RWPSTESI KIL Sbjct: 1 MLSHDSIWRAIDALAERHRLSPSGLARRAGLDPTSFNKSKRQSTDGRDRWPSTESIAKIL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 AT ++ Q L L + +E+++ IPL+ F +G+GGFFD G FP G W+T+ Sbjct: 61 HATGASVDQFLALMEPNAAGSEREDASAAPGIPLIGFAQAGAGGFFDDGGFPVGQGWDTI 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 P Q + Q SMLPLYR GD+LI++ + QV DR+++K R G Sbjct: 121 EFPTPERR-------QGGTYALEVQGDSMLPLYRDGDVLIVDPSAQVRRNDRVVVKTRGG 173 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++AKVL + R I+L+SLN +P EM+D+EWIARI+WASQ Sbjct: 174 EVMAKVLARQTPRGIELVSLNPDHPNRNFEMNDVEWIARIIWASQ 218 >gi|154245416|ref|YP_001416374.1| putative phage repressor [Xanthobacter autotrophicus Py2] gi|154159501|gb|ABS66717.1| putative phage repressor [Xanthobacter autotrophicus Py2] Length = 225 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 130/234 (55%), Gaps = 22/234 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +H ++W AID++AE+H L+ SGLAR++GLDPT+FN+SKR +GR RWPSTESI K L Sbjct: 1 MLTHGQVWRAIDQLAEQHGLSTSGLARRSGLDPTTFNRSKRITTDGRLRWPSTESIAKAL 60 Query: 63 AATNET-------------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 +AT + + + IP + F +GSGGFFD F Sbjct: 61 SATGTSAELFFAMMVPADERHGGAHGFAEESQPLTGPIHAIPQIGFAQAGSGGFFDDAGF 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 P G W+ + PE+ H + SM P+YR GDI++++ V GD Sbjct: 121 PVGTGWDEIAFPEVEDQH---------AYALEIAGDSMQPVYRNGDIVVVSPGTPVRRGD 171 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 R+++K R G+++AK L+ + R ++L SLN + + + +EW+ARI+WASQ Sbjct: 172 RVVVKTREGEVLAKELVRKTTRHVELRSLNPAHEDRQIPLDQLEWMARIIWASQ 225 >gi|158422012|ref|YP_001523304.1| S24 family peptidase [Azorhizobium caulinodans ORS 571] gi|158328901|dbj|BAF86386.1| peptidase family S24 protein [Azorhizobium caulinodans ORS 571] Length = 222 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 92/231 (39%), Positives = 136/231 (58%), Gaps = 19/231 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +H +IW AIDR+AE + L+ SGLA++AGLD T+FN+SKR +GR RWPSTES+ KIL Sbjct: 1 MLTHGQIWTAIDRLAEANGLSASGLAKRAGLDSTAFNRSKRITSDGRPRWPSTESVSKIL 60 Query: 63 AATNETICQL----------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 +ATN ++ + + ++ IP + +G GGFFD FP G Sbjct: 61 SATNTSMRAFLALLEGEDIGPSGFSEEPAPPFRPQRAIPHIGLAQAGDGGFFDDAGFPVG 120 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + W+ + PE+ H + SMLPLYR GD+++++ A V GDR++ Sbjct: 121 SGWDEILFPEVEDEH---------AYALEISGDSMLPLYRPGDLVVVSPAASVRKGDRVV 171 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +K R G+++AK L+ R R+++L SLN Y T+ +D+ WIARI+WASQ Sbjct: 172 VKTRDGEVLAKELVRRTARTVELRSLNPEYEGRTLAATDVLWIARIIWASQ 222 >gi|298290079|ref|YP_003692018.1| phage repressor [Starkeya novella DSM 506] gi|296926590|gb|ADH87399.1| putative phage repressor [Starkeya novella DSM 506] Length = 206 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 92/221 (41%), Positives = 132/221 (59%), Gaps = 15/221 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +H +IW AID++AERH L+ S LA++AGLDPT+FN+SKR +GR RWPSTESI KIL Sbjct: 1 MLTHAQIWRAIDQLAERHGLSASALAKRAGLDPTTFNRSKREQPDGRARWPSTESIAKIL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AAT ++ + L R + IPL+ F +G GG+FD FP G W+ + P Sbjct: 61 AATGASLDDFMALIGGGTR------RAIPLIGFAQAGRGGYFDDAGFPVGGAWDEIEFPN 114 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + H + SMLPLYR GD+++++ A GDR+++K R G+++A Sbjct: 115 VGDEH---------AYALEIAGDSMLPLYRDGDVVVVSPAAATRRGDRVIVKTREGEVMA 165 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K L R ++++L SLN + + +I WIAR+LWASQ Sbjct: 166 KELKRRTAKTVELRSLNPEHADRVFQEGEIAWIARVLWASQ 206 >gi|83859576|ref|ZP_00953096.1| peptidase S24 [Oceanicaulis alexandrii HTCC2633] gi|83851935|gb|EAP89789.1| peptidase S24 [Oceanicaulis alexandrii HTCC2633] Length = 210 Score = 201 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 120/224 (53%), Gaps = 15/224 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIF 59 M +H +IW IDR+A R LTPSGLAR+AGLDPT+FN SKR +G + RWPSTES+ Sbjct: 1 MPMLTHAQIWSGIDRLAHRAGLTPSGLARRAGLDPTTFNPSKRTSADGAKPRWPSTESLA 60 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K L AT + L + +PLL F +G G+FD FPTG W + Sbjct: 61 KALEATRVSFDDFAALAM-----GHTAGRSVPLLGFAQAGDHGYFDDAGFPTGEGWEDIR 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + SM P+YR GD ++++ GDR+++K R+G+ Sbjct: 116 FPGDEGEG---------AYALEISGESMSPVYRHGDRIVVSPDAPPRRGDRVVVKTRSGE 166 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++AK L S++L+SLN Y + D+ W+ARI+WASQ Sbjct: 167 VMAKELGRVTAESVELISLNPSYDNRILSTRDLVWMARIVWASQ 210 >gi|222084796|ref|YP_002543325.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722244|gb|ACM25400.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 221 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 109/228 (47%), Positives = 147/228 (64%), Gaps = 14/228 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IW AID++AER+ LTPSGLAR+AGLDPTSFNKSKR G +GR RWPSTESI K+L Sbjct: 1 MLSHEQIWSAIDKLAERYALTPSGLARRAGLDPTSFNKSKRLGQDGRLRWPSTESIAKVL 60 Query: 63 AATNETICQL-------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 AT ++ Q + + IPLL F +GSGGFFD G FP G W Sbjct: 61 GATGASMEQFLGILRPVERGDGNADHASSPPASSIPLLGFAQAGSGGFFDDGGFPAGQGW 120 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + V P G+YA++ Q SMLPLYR GD+LI+ Q+ DR+++K Sbjct: 121 DMVEFPAAPGQKGGVYALE-------VQGESMLPLYRDGDVLIVEPGAQIRRSDRVVVKT 173 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 R G+++AKVL+ + +SI+L+SLN +P + +++D+EWIARI+WASQ Sbjct: 174 REGEVMAKVLLRQSAKSIELLSLNPEHPNRSFDLADVEWIARIIWASQ 221 >gi|86751722|ref|YP_488218.1| putative phage repressor [Rhodopseudomonas palustris HaA2] gi|86574750|gb|ABD09307.1| putative phage repressor [Rhodopseudomonas palustris HaA2] Length = 210 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 136/223 (60%), Gaps = 13/223 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H +IW A+DR+AER L+PSGLA+K+GLDPT+FNKSKR +GR RWPSTES+ K Sbjct: 1 MQMLTHDQIWTALDRLAERSGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 LAATN I + L + + +PLL +G+GGFFD G FP G W+ +G+ Sbjct: 61 ALAATNTAIDTFVQLITDRP----RVVQSVPLLGLAQAGAGGFFDDGGFPAGKGWDEIGL 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P I H + SM P YR GDI++++ + GDR+++K +G++ Sbjct: 117 PSINDEH---------AYALEISGESMKPAYRDGDIIVVSPGTAIRRGDRVVVKTTSGEV 167 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K L R + ++L SLN +P T+ +D+EWIARI+WASQ Sbjct: 168 MVKELKRRTTKIVELASLNPSHPDRTLAPADVEWIARIVWASQ 210 >gi|239787365|emb|CAX83841.1| Predicted transcriptional regulator [uncultured bacterium] Length = 210 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 132/221 (59%), Gaps = 11/221 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H IW AIDR+A +H LT SGLARKAGLDPT+FNKSKR EG+ RWPSTES+ K+L Sbjct: 1 MLRHADIWHAIDRLAFKHGLTASGLARKAGLDPTTFNKSKRTSPEGKLRWPSTESVAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AT +I + + + + + IPL+ +GS G+FD +PTG W+ + PE Sbjct: 61 TATGASIAEFVTMIDN--PDETGAVQRIPLIGLAQAGSDGYFDDAGYPTGAGWDEIPFPE 118 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + ++ + SM PLYR+GDI+I++ A Q+ DR+++K G+++ Sbjct: 119 MGD---------SKAYALEITGDSMEPLYREGDIVIVSPAAQIRRADRVIVKTNDGEVMV 169 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K L+ R + +DL SLN +P ++ + ++ I R++WASQ Sbjct: 170 KQLLRRTAKFVDLQSLNDQHPNRSLPIEEVALIHRVVWASQ 210 >gi|114704909|ref|ZP_01437817.1| Peptidase family S24:Peptidase S24, C-terminal [Fulvimarina pelagi HTCC2506] gi|114539694|gb|EAU42814.1| Peptidase family S24:Peptidase S24, C-terminal [Fulvimarina pelagi HTCC2506] Length = 216 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 93/225 (41%), Positives = 136/225 (60%), Gaps = 13/225 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH +IW AID +A+R+ LTPSGLARKAGLDPT+FNKSKR +GR RWPSTES+ KI Sbjct: 1 MFSHDEIWSAIDALAKRNGLTPSGLARKAGLDPTTFNKSKRQSTDGRPRWPSTESLSKIF 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPL----LYFPPSGSGGFFDSGVFPTGNKWNTV 118 A N + L D ++ K + P+ L +G GGFFD FP G+ W+ + Sbjct: 61 EAVNSSFGDFAQLVSGDDAESDSKVRSKPVSVPLLGLAEAGGGGFFDDAGFPAGHGWDEI 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P+ + + SM PLYR+GD ++++ V GDR+++K R G Sbjct: 121 TLPDGKDEP---------MYALEVSGRSMEPLYREGDRIVVSPTASVRRGDRVVVKTREG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++AK+L + R+I+L SLN +P+ + +I+W+ARI+WA+Q Sbjct: 172 EVMAKILQRQTARTIELSSLNPDFPLRQFAVEEIDWLARIVWATQ 216 >gi|91975266|ref|YP_567925.1| putative phage repressor [Rhodopseudomonas palustris BisB5] gi|91681722|gb|ABE38024.1| peptidase S24, S26A and S26B [Rhodopseudomonas palustris BisB5] Length = 210 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 132/223 (59%), Gaps = 13/223 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H +IW A+DR+AER L+ SGLA+++GLDPT+FNKSKR +GR RWPSTES+ K Sbjct: 1 MHMLTHDQIWTALDRLAERAGLSASGLAKRSGLDPTTFNKSKRITNDGRERWPSTESVAK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 LAATN I + L + + +PLL +G+GGFFD G FP G W VG+ Sbjct: 61 ALAATNTAIDTFVQLITDRP----RVVQSVPLLGLAQAGAGGFFDDGGFPAGKGWEEVGL 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + H + SM P YR GDI++++ + GDR+++K G++ Sbjct: 117 PSVNDEH---------AYALEISGDSMKPAYRDGDIIVVSPGTAIRRGDRVVVKTTGGEV 167 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K L R + ++L SLN + T+ +D+EWIARI+WASQ Sbjct: 168 MVKELKRRTTKIVELASLNPSHADRTLAPADVEWIARIVWASQ 210 >gi|163851531|ref|YP_001639574.1| peptidase S24/S26 domain-containing protein [Methylobacterium extorquens PA1] gi|163663136|gb|ABY30503.1| peptidase S24 and S26 domain protein [Methylobacterium extorquens PA1] Length = 210 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 92/222 (41%), Positives = 130/222 (58%), Gaps = 13/222 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L Sbjct: 1 MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121 AAT ++ L L S T +PL+ +GSG F+ PTG W+ + P Sbjct: 61 AATGASLDDFLHLVDSGQGPTRT---MVPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFP 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++ + + Q SMLPLYR GD+LI+ + GDR++ + G+++ Sbjct: 118 DLGG---------DRAFALEVQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLNNGEVL 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 AK L R R+I+L SLN + V ++D+ W+AR++W Q Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLADVAWMARVMWVRQ 210 >gi|218530341|ref|YP_002421157.1| phage repressor [Methylobacterium chloromethanicum CM4] gi|240138699|ref|YP_002963171.1| putative LexA/Signal peptidase [Methylobacterium extorquens AM1] gi|218522644|gb|ACK83229.1| putative phage repressor [Methylobacterium chloromethanicum CM4] gi|240008668|gb|ACS39894.1| putative LexA/Signal peptidase [Methylobacterium extorquens AM1] Length = 210 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 13/222 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L Sbjct: 1 MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121 AAT ++ L L S T +PL+ +GSG F+ PTG W+ + P Sbjct: 61 AATGASLDDFLHLVDSGQGPTRT---MVPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFP 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++ + + Q SMLPLYR GD+LI+ + GDR++ + G+++ Sbjct: 118 DLGG---------DRAFALEVQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLNNGEVL 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 AK L R R+I+L SLN + V ++++ W+AR++W Q Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210 >gi|254561298|ref|YP_003068393.1| LexA/Signal peptidase [Methylobacterium extorquens DM4] gi|254268576|emb|CAX24533.1| putative LexA/Signal peptidase [Methylobacterium extorquens DM4] Length = 210 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 13/222 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L Sbjct: 1 MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121 AAT ++ L L S T +PL+ +GSG F+ PTG W+ + P Sbjct: 61 AATGASLDDFLHLVDSGQAPTRT---MVPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFP 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++ + + Q SMLPLYR GD+LI+ + GDR++ + G+++ Sbjct: 118 DLGG---------DRAFALEVQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLTNGEVL 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 AK L R R+I+L SLN + V ++++ W+AR++W Q Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210 >gi|188581313|ref|YP_001924758.1| phage repressor [Methylobacterium populi BJ001] gi|179344811|gb|ACB80223.1| putative phage repressor [Methylobacterium populi BJ001] Length = 210 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 129/222 (58%), Gaps = 13/222 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L Sbjct: 1 MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121 +AT ++ L L S + +PL+ +GSG F PTG W+ + P Sbjct: 61 SATGASLDDFLHLVDSGQASART---MVPLIGLTQAGSGRLFTEEGIPTGGPGWDEIEFP 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++ H + Q SMLPLYR GD+LI+ + GDR++ + G++V Sbjct: 118 DLGGDH---------AFALEVQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLTNGEVV 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 AK L R R+I+L SLN + V ++++ W+AR++W Q Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210 >gi|23015760|ref|ZP_00055528.1| COG2932: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 211 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 10/221 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H IW AID +A H LT S LARKAGLDPT+FNKSKR EG+ RWPSTES+ K+L Sbjct: 1 MLKHADIWAAIDALARDHGLTASALARKAGLDPTTFNKSKRVTREGKPRWPSTESVAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AT T+ + + IPL+ F +G G+FD +P G W+ + PE Sbjct: 61 EATGATMTAFVGYIEDT-AQARQTANTIPLIGFAQAGDCGYFDDAGYPVGGSWDEIPFPE 119 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 I PH + SM PLYR GD++I++ A V GDR++++ G+++ Sbjct: 120 IGDPH---------AYALEVSGDSMEPLYRDGDVVIVSPAAGVRRGDRVVVRTTEGEVMV 170 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K L+ + + I+L S+N +P ++ ++ WIARILW+SQ Sbjct: 171 KQLVRQTAKRIELASINPAHPGRSLATEEVAWIARILWSSQ 211 >gi|222147460|ref|YP_002548417.1| bacteriophage repressor protein [Agrobacterium vitis S4] gi|221734450|gb|ACM35413.1| bacteriophage repressor protein [Agrobacterium vitis S4] Length = 224 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 106/233 (45%), Positives = 138/233 (59%), Gaps = 21/233 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH+ IW AIDR+AE+++LTPSGLARKAGLDPTSFNKSKR G +GR RWPSTESI K+L Sbjct: 1 MLSHETIWNAIDRLAEQYHLTPSGLARKAGLDPTSFNKSKRVGPDGRMRWPSTESIAKVL 60 Query: 63 AATNETICQLLD------------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 AT I Q + + IPLL +GSGGFFD G FP Sbjct: 61 EATGARIDQFVTLISNDNHQVNAVHETLPDGNFPPQIGTIPLLGLAQAGSGGFFDDGGFP 120 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G W+ V +P + + + Q SM PLYR GDILI+ V GDR Sbjct: 121 AGQGWDLVDLPT---------SAKPGVYALEIQGDSMKPLYRDGDILIVEPGAPVRRGDR 171 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++K G+++AKVL + R++DL+S+N +P ++M D+EWIARI+W SQ Sbjct: 172 VVVKTCDGEVMAKVLGRQTARTVDLISINPDHPNRVLDMQDVEWIARIIWVSQ 224 >gi|170746983|ref|YP_001753243.1| putative phage repressor [Methylobacterium radiotolerans JCM 2831] gi|170653505|gb|ACB22560.1| putative phage repressor [Methylobacterium radiotolerans JCM 2831] Length = 210 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 129/222 (58%), Gaps = 13/222 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IW AIDR+AERH + SGLAR+AGLD TSFN+SKR G +GR RWPSTES+ K+L Sbjct: 1 MLSHEQIWNAIDRLAERHGYSASGLARRAGLDATSFNRSKRVGADGRKRWPSTESVSKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVP 121 AAT ++ + L L +PL+ +G+G F PTG W + P Sbjct: 61 AATGSSLDEFLRLIE---AREIPARTMVPLIGLTQAGAGRLFTDEGMPTGGAGWEEIEFP 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++ + + + Q SMLPL+R GD+LI++ V GDR++++ G+++ Sbjct: 118 DLG---------EERAFALEIQGDSMLPLFRDGDVLIVSPTASVRKGDRVVVRLHGGEVL 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 AK L R R+++L SLN + + + ++ W+AR++W Q Sbjct: 169 AKELRRRTARTVELASLNPEHEDRVLNLGEVAWMARVMWVRQ 210 >gi|114799918|ref|YP_759340.1| S24 family peptidase [Hyphomonas neptunium ATCC 15444] gi|114740092|gb|ABI78217.1| peptidase, S24 family [Hyphomonas neptunium ATCC 15444] Length = 205 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 115/220 (52%), Gaps = 15/220 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 HK IW +D +A H LT S LA++AGLDPTSFN SKR +GR RWPSTES+ ++L Sbjct: 1 MQHKDIWRGLDLLAAHHGLTASALAKRAGLDPTSFNPSKREAADGRPRWPSTESLARVLD 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L ++ PL+ F +G GFFD FP G W V P + Sbjct: 61 AVGAGFDDFAALVEG------RRGGSAPLIGFAQAGQDGFFDDAGFPVGAGWEEVRFPGL 114 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + SM P YR GD +I+ +V GDR++ K G+++AK Sbjct: 115 GAE---------TVYALEISGDSMEPAYRAGDRIIVAPGAEVKPGDRVVAKTVAGEVMAK 165 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 VL + R I+L SLN YP + S++ W+ARILWASQ Sbjct: 166 VLARKNTRLIELASLNPAYPAREFKPSEVAWLARILWASQ 205 >gi|167644106|ref|YP_001681769.1| putative phage repressor [Caulobacter sp. K31] gi|167346536|gb|ABZ69271.1| putative phage repressor [Caulobacter sp. K31] Length = 219 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 16/227 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ SH +IW AID +A+R +++PS +A+ AGLDPTSFN+SKR + R RWPSTES+ K Sbjct: 5 MSPLSHTEIWTAIDALAKRFDMSPSAMAKMAGLDPTSFNRSKRGDGDARPRWPSTESLAK 64 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L AT + L + +PL+ F +G+ G FD P G W+ + Sbjct: 65 VLEATGVGFSEFAALTERVRP---LNPRVVPLIGFAQAGAEGVFDETGAPIGAGWDEIDF 121 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + + ++ P++R GD ++++ + GDR++++ G++ Sbjct: 122 PGLGDEG---------VYALEITGDALAPVFRDGDRILVSPSAPPRRGDRVVVRTAGGEL 172 Query: 181 VAKVLISRRGRSIDLMSLN----CCYPVDTVEMSDIEWIARILWASQ 223 + K L RS++L LN T+++ ++ WIARILWASQ Sbjct: 173 LVKELARVTARSVELAPLNRLDGRDGGDRTLDLGEVVWIARILWASQ 219 >gi|209883821|ref|YP_002287678.1| peptidase S24 [Oligotropha carboxidovorans OM5] gi|209872017|gb|ACI91813.1| peptidase S24 [Oligotropha carboxidovorans OM5] Length = 207 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 92/221 (41%), Positives = 133/221 (60%), Gaps = 14/221 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +H +IW A+DR+A R L+PSGLA++AGLDPT+FNKSKR +GR RWPSTES+ K L Sbjct: 1 MMTHDQIWAALDRLAARAGLSPSGLAKRAGLDPTTFNKSKRVTNDGRERWPSTESVAKAL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AAT ++ + + ++PLL F +GSGG+FD G FP G WN VG+P Sbjct: 61 AATGVSVDTFAHFIE-----SSSRTVQVPLLGFAEAGSGGYFDDGGFPVGEGWNEVGLPS 115 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + H + SM P YR GD+++++ + GDR+++K + G+++ Sbjct: 116 VNDEH---------AYALEISGDSMKPAYRDGDVIVVSPGAPIRRGDRVVVKTKDGEVMV 166 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K L R + I+L SLN +P T ++I+WIARI+WASQ Sbjct: 167 KELRRRTQKVIELQSLNPAHPDRTFPTAEIDWIARIVWASQ 207 >gi|163761294|ref|ZP_02168369.1| putative phage-related transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162281451|gb|EDQ31747.1| putative phage-related transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 226 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 108/231 (46%), Positives = 145/231 (62%), Gaps = 16/231 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 SH++IW A+D +AERH LT SGLAR+AGLDPT+FNKSKR G +GR+RWPSTES+ K+ Sbjct: 3 PMLSHERIWSALDALAERHGLTASGLARRAGLDPTAFNKSKRRGADGRDRWPSTESLAKV 62 Query: 62 LAATNETICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 L AT ++ + D + IPLL F +GSGGFFD G FP G Sbjct: 63 LDATGSSLNDFMSLVVGGQRNDASAIPEGAFPPQAGSIPLLGFAQAGSGGFFDDGGFPAG 122 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 W+ V P S G+YA++ Q SMLPLYR GDILI+ QV GDR++ Sbjct: 123 QGWDVVDFPAQPSERPGVYALE-------VQGDSMLPLYRDGDILIVEPGAQVRRGDRVV 175 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++ G+++AKVL RS++L+SLN +P + E+S+I+W+ARI+WASQ Sbjct: 176 VRSGEGEVMAKVLNRLSPRSVELISLNPDHPNRSFELSEIDWMARIIWASQ 226 >gi|83313328|ref|YP_423592.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948169|dbj|BAE53033.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 223 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 10/222 (4%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 H IW AID +A H LT S LARKAGLDPT+FNKSKR EG+ RWPSTES+ K+ Sbjct: 12 PMLKHADIWAAIDALARDHGLTASALARKAGLDPTTFNKSKRITREGKPRWPSTESVAKV 71 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L AT ++ + + + IPL+ F +G G+FD +P G W+ + P Sbjct: 72 LEATGASMTAFVAYIEDLAQP-HNQASTIPLVGFAQAGDRGYFDDAGYPVGGSWDEIPFP 130 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 EI PH + SM PLYR GD++I++ A V GDR++++ G+++ Sbjct: 131 EIGDPH---------AYALEVSGDSMEPLYRDGDVVIVSPAAGVRRGDRVVVRTTEGEVM 181 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K L+ + R I+L S+N +P ++ ++ W+ARILW+SQ Sbjct: 182 VKQLLRQTARRIELGSINPAHPGRSLATEEVAWMARILWSSQ 223 >gi|110632380|ref|YP_672588.1| putative phage repressor [Mesorhizobium sp. BNC1] gi|110283364|gb|ABG61423.1| putative phage repressor [Chelativorans sp. BNC1] Length = 214 Score = 191 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 134/223 (60%), Gaps = 11/223 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH+K+W AID +A RH+L+ SGLARKAGLD T+FN+SKR +GR RWPSTES+ KI+ Sbjct: 1 MLSHEKVWAAIDALAARHSLSASGLARKAGLDSTAFNRSKRHSPDGRPRWPSTESLAKIM 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 AT T+ + L + +K I + + F +G+GG+F FP G W V + Sbjct: 61 DATGVTLGEFTALIEEMAESGRRKPGRISVPLIGFAQAGAGGYFTDAGFPVGQGWEQVEL 120 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P S + Q SMLPLYR GD+L++ + V GDR++++ G++ Sbjct: 121 PGQVSE---------AAYALEVQGDSMLPLYRNGDVLVVEPSAPVRRGDRVVVRTLDGEV 171 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +AK+L+ + R ++L+SLN +P + +++WIARI+WASQ Sbjct: 172 MAKILLRQTSRQMELLSLNPDHPNRVLGHEEVDWIARIVWASQ 214 >gi|86356189|ref|YP_468081.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280291|gb|ABC89354.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 223 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 115/230 (50%), Positives = 151/230 (65%), Gaps = 16/230 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SHK+IWEAIDR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L Sbjct: 1 MLSHKQIWEAIDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60 Query: 63 AATNETICQLLDLPFS---------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 AT ++ Q L R IPLL F +G+GGFFD G FP G+ Sbjct: 61 DATGASMEQFLAFMQPASSSSGERIGERAGPSPGGAIPLLGFAQAGAGGFFDDGGFPAGH 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV DR+++ Sbjct: 121 GWDVVEFPPKPSQRSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVVV 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + TG+++AKVL+ + RSI+LMSLN +P T++++D++WIARI+WASQ Sbjct: 174 RTCTGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLADVDWIARIIWASQ 223 >gi|315499624|ref|YP_004088427.1| phage repressor [Asticcacaulis excentricus CB 48] gi|315417636|gb|ADU14276.1| putative phage repressor [Asticcacaulis excentricus CB 48] Length = 209 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 123/224 (54%), Gaps = 19/224 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE--GRNRWPSTESIFK 60 S SH +IW AIDR+A +PSGLAR AGLDPT+FNKSKR E R RWPSTES+ K Sbjct: 2 SLSHAQIWNAIDRLARNLGTSPSGLARLAGLDPTAFNKSKRQSTEDPPRPRWPSTESLAK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L AT ++ L K +PL+ F +G+ G FD FP G W+ +G+ Sbjct: 62 VLDATGQSFPDFAALTE-----PRPVPKGVPLIGFAQAGNDGLFDDAGFPVGQGWDEIGL 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGD 179 P + SMLPLYR GD +I++ + GDR+++K G+ Sbjct: 117 PAG-----------EGLYALEISGDSMLPLYRDGDRIIVDPLRQNLRRGDRVVVKTSEGE 165 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++AK L+ + ++L SLN + +E S + W+ARI+WASQ Sbjct: 166 VMAKELVRLTEKQVELRSLNPDFSNRVLERSQVTWLARIVWASQ 209 >gi|254292703|ref|YP_003058726.1| phage repressor [Hirschia baltica ATCC 49814] gi|254041234|gb|ACT58029.1| putative phage repressor [Hirschia baltica ATCC 49814] Length = 206 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 119/221 (53%), Gaps = 16/221 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKIL 62 H IW ID +A RH L+ S LAR AGLD T+FNKSKR +G + RWPSTES+ K L Sbjct: 1 MRHSDIWNGIDALAARHGLSVSALARAAGLDATAFNKSKRASADGSKPRWPSTESLSKAL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AA + D+ ++ + IPL+ +G GGFFD FP G W+ + P+ Sbjct: 61 AAVGTGWEEFADMAQG------RQGRTIPLIGLAQAGDGGFFDDAGFPVGASWDDIHFPD 114 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + SM P++R+GD +I+ + V GDR++ K + G+++A Sbjct: 115 MGDE---------TVYALEISGDSMEPVFREGDRIIVAPGMDVRRGDRVVAKTKEGEVLA 165 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K L ++L+S N YP SDIEWIARILWASQ Sbjct: 166 KFLGHLSASRVELISANPAYPPREFAASDIEWIARILWASQ 206 >gi|218671565|ref|ZP_03521235.1| putative phage-related transcriptional regulator protein [Rhizobium etli GR56] Length = 223 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 115/230 (50%), Positives = 152/230 (66%), Gaps = 16/230 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTT---------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 AT ++ Q L ++ IPLL F +G+GGFFD G FP G Sbjct: 61 DATGASMEQFLAFMRPGANSSAELPGERAKPPHGGAIPLLGFAQAGAGGFFDDGGFPAGQ 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV DR+++ Sbjct: 121 GWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVVV 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ Sbjct: 174 RTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 223 >gi|189022624|ref|YP_001932365.1| Peptidase family S24 [Brucella abortus S19] gi|260544608|ref|ZP_05820429.1| peptidase family S24 [Brucella abortus NCTC 8038] gi|261756989|ref|ZP_06000698.1| peptidase family S24 [Brucella sp. F5/99] gi|306839063|ref|ZP_07471883.1| Peptidase family S24 [Brucella sp. NF 2653] gi|306841676|ref|ZP_07474363.1| Peptidase family S24 [Brucella sp. BO2] gi|189021198|gb|ACD73919.1| Peptidase family S24 [Brucella abortus S19] gi|260097879|gb|EEW81753.1| peptidase family S24 [Brucella abortus NCTC 8038] gi|261736973|gb|EEY24969.1| peptidase family S24 [Brucella sp. F5/99] gi|306288206|gb|EFM59590.1| Peptidase family S24 [Brucella sp. BO2] gi|306405886|gb|EFM62145.1| Peptidase family S24 [Brucella sp. NF 2653] Length = 223 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 99/228 (43%), Positives = 131/228 (57%), Gaps = 15/228 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+ Sbjct: 5 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64 Query: 62 LAATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + AT T + + IPLL +G+GG+FD FP G W Sbjct: 65 MEATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGW 124 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + V P + SMLPLYR GD LI+ V GDR++++ Sbjct: 125 DIVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 175 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ Sbjct: 176 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223 >gi|225629264|ref|ZP_03787297.1| Repressor protein C [Brucella ceti str. Cudo] gi|237816924|ref|ZP_04595916.1| Repressor protein C [Brucella abortus str. 2308 A] gi|225615760|gb|EEH12809.1| Repressor protein C [Brucella ceti str. Cudo] gi|237787737|gb|EEP61953.1| Repressor protein C [Brucella abortus str. 2308 A] Length = 234 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 99/228 (43%), Positives = 131/228 (57%), Gaps = 15/228 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+ Sbjct: 16 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 75 Query: 62 LAATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + AT T + + IPLL +G+GG+FD FP G W Sbjct: 76 MEATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGW 135 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + V P + SMLPLYR GD LI+ V GDR++++ Sbjct: 136 DIVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 186 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ Sbjct: 187 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 234 >gi|265999054|ref|ZP_05464836.2| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9] gi|263092030|gb|EEZ16327.1| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9] Length = 223 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 99/228 (43%), Positives = 132/228 (57%), Gaps = 15/228 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+ Sbjct: 5 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64 Query: 62 LAATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + AT T + + + IPLL +G+GG+FD FP G W Sbjct: 65 MEATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGW 124 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + V P + SMLPLYR GD LI+ V GDR++++ Sbjct: 125 DIVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 175 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ Sbjct: 176 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223 >gi|260564858|ref|ZP_05835343.1| peptidase family S24 [Brucella melitensis bv. 1 str. 16M] gi|260152501|gb|EEW87594.1| peptidase family S24 [Brucella melitensis bv. 1 str. 16M] Length = 223 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 99/228 (43%), Positives = 132/228 (57%), Gaps = 15/228 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K+ Sbjct: 5 TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64 Query: 62 LAATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + AT T + + + IPLL +G+GG+FD FP G W Sbjct: 65 MEATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAKAGAGGYFDDAGFPAGQGW 124 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + V P + SMLPLYR GD LI+ V GDR++++ Sbjct: 125 DIVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 175 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 R G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ Sbjct: 176 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223 >gi|23500526|ref|NP_699966.1| S24 family peptidase [Brucella suis 1330] gi|62317372|ref|YP_223225.1| S24 family peptidase [Brucella abortus bv. 1 str. 9-941] gi|83269348|ref|YP_418639.1| S24 family peptidase [Brucella melitensis biovar Abortus 2308] gi|148558376|ref|YP_001257738.1| S24 family peptidase [Brucella ovis ATCC 25840] gi|161620851|ref|YP_001594737.1| repressor protein C [Brucella canis ATCC 23365] gi|163844918|ref|YP_001622573.1| hypothetical protein BSUIS_B0784 [Brucella suis ATCC 23445] gi|254695818|ref|ZP_05157646.1| Peptidase family S24 [Brucella abortus bv. 3 str. Tulya] gi|254698652|ref|ZP_05160480.1| Peptidase family S24 [Brucella abortus bv. 2 str. 86/8/59] gi|254700006|ref|ZP_05161834.1| Peptidase family S24 [Brucella suis bv. 5 str. 513] gi|254703127|ref|ZP_05164955.1| Peptidase family S24 [Brucella suis bv. 3 str. 686] gi|254705728|ref|ZP_05167556.1| Peptidase family S24 [Brucella pinnipedialis M163/99/10] gi|254720098|ref|ZP_05181909.1| Peptidase family S24 [Brucella sp. 83/13] gi|254732099|ref|ZP_05190677.1| Peptidase family S24 [Brucella abortus bv. 4 str. 292] gi|256015557|ref|YP_003105566.1| peptidase, S24 family [Brucella microti CCM 4915] gi|256157535|ref|ZP_05455453.1| Peptidase family S24 [Brucella ceti M490/95/1] gi|256253490|ref|ZP_05459026.1| Peptidase family S24 [Brucella ceti B1/94] gi|256256056|ref|ZP_05461592.1| Peptidase family S24 [Brucella abortus bv. 9 str. C68] gi|260167569|ref|ZP_05754380.1| Peptidase family S24 [Brucella sp. F5/99] gi|260759885|ref|ZP_05872233.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260763123|ref|ZP_05875455.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882275|ref|ZP_05893889.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261216238|ref|ZP_05930519.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261220617|ref|ZP_05934898.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261313149|ref|ZP_05952346.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261750489|ref|ZP_05994198.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261753747|ref|ZP_05997456.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265985104|ref|ZP_06097839.1| conserved hypothetical protein [Brucella sp. 83/13] gi|265996036|ref|ZP_06108593.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|297249410|ref|ZP_06933111.1| peptidase family S24 [Brucella abortus bv. 5 str. B3196] gi|306846010|ref|ZP_07478577.1| Peptidase family S24 [Brucella sp. BO1] gi|23464158|gb|AAN33971.1| peptidase, S24 family [Brucella suis 1330] gi|62197565|gb|AAX75864.1| peptidase, S24 family [Brucella abortus bv. 1 str. 9-941] gi|82939622|emb|CAJ12611.1| Peptidase family S24:Peptidase S24, C-terminal [Brucella melitensis biovar Abortus 2308] gi|148369661|gb|ABQ62533.1| peptidase, S24 family [Brucella ovis ATCC 25840] gi|161337662|gb|ABX63966.1| Repressor protein C [Brucella canis ATCC 23365] gi|163675641|gb|ABY39751.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|255998217|gb|ACU49904.1| peptidase, S24 family [Brucella microti CCM 4915] gi|260670203|gb|EEX57143.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260673544|gb|EEX60365.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260871803|gb|EEX78872.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260917845|gb|EEX84706.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260919201|gb|EEX85854.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261302175|gb|EEY05672.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261740242|gb|EEY28168.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261743500|gb|EEY31426.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262550333|gb|EEZ06494.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264663696|gb|EEZ33957.1| conserved hypothetical protein [Brucella sp. 83/13] gi|297173279|gb|EFH32643.1| peptidase family S24 [Brucella abortus bv. 5 str. B3196] gi|306273645|gb|EFM55490.1| Peptidase family S24 [Brucella sp. BO1] Length = 218 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 98/227 (43%), Positives = 130/227 (57%), Gaps = 15/227 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++ Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60 Query: 63 AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 AT T + + IPLL +G+GG+FD FP G W+ Sbjct: 61 EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 V P + SMLPLYR GD LI+ V GDR++++ R Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218 >gi|327190883|gb|EGE57941.1| putative phage-related transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 228 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 114/235 (48%), Positives = 152/235 (64%), Gaps = 21/235 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60 Query: 63 AATNETICQL--------------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 AT ++ Q + + + IPLL F +G+GGFFD G Sbjct: 61 DATGASMEQFLALLPPGGTAAERTGERAQQPDSRFQPQGGAIPLLGFAQAGAGGFFDDGG 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 FP G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV Sbjct: 121 FPAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRN 173 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 DR++++ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ Sbjct: 174 DRVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228 >gi|241202972|ref|YP_002974068.1| phage repressor [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856862|gb|ACS54529.1| putative phage repressor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 225 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 111/232 (47%), Positives = 147/232 (63%), Gaps = 18/232 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH +IWEA+DR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L Sbjct: 1 MLSHNQIWEALDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60 Query: 63 AATNETICQLLDLP-----------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 AT ++ Q + + IPLL F +G+GGFFD G FP Sbjct: 61 DATGASMEQFMAFMRPDAGLSKQPAGQQENAFPPQGGSIPLLGFAQAGAGGFFDDGGFPA 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G W+ V P S G+YA++ Q SM+PLYR GD+LI+ QV DR+ Sbjct: 121 GQGWDVVEFPAAPSQKAGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRV 173 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++ G+++AKVL+ + RSI+L+SLN +P T+E+SD++WIARI+WASQ Sbjct: 174 VVRTNEGEVMAKVLLRQSPRSIELLSLNPEHPNRTLELSDVDWIARIIWASQ 225 >gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter asiaticus str. psy62] gi|254040121|gb|ACT56917.1| bacteriophage repressor protein C1 [Candidatus Liberibacter asiaticus str. psy62] Length = 223 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK Sbjct: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV Sbjct: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI Sbjct: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ Sbjct: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 >gi|218516275|ref|ZP_03513115.1| putative phage-related transcriptional regulator protein [Rhizobium etli 8C-3] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 114/235 (48%), Positives = 152/235 (64%), Gaps = 21/235 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60 Query: 63 AATNETICQL--------------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 AT ++ Q + + + IPLL F +G+GGFFD G Sbjct: 61 DATGASMEQFLALLPPGGTAAERTGERAQRLDSRFQPEGGAIPLLGFAQAGAGGFFDDGG 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 FP G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV Sbjct: 121 FPAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRN 173 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 DR++++ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ Sbjct: 174 DRVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228 >gi|254712567|ref|ZP_05174378.1| Peptidase family S24 [Brucella ceti M644/93/1] gi|254715639|ref|ZP_05177450.1| Peptidase family S24 [Brucella ceti M13/05/1] gi|261217388|ref|ZP_05931669.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261320261|ref|ZP_05959458.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260922477|gb|EEX89045.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292951|gb|EEX96447.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 218 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 99/227 (43%), Positives = 131/227 (57%), Gaps = 15/227 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++ Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60 Query: 63 AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 AT T + + IPLL +G+GG+FD FPTG W+ Sbjct: 61 EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPTGQGWD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 V P + SMLPLYR GD LI+ V GDR++++ R Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218 >gi|116250339|ref|YP_766177.1| phage-related transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254987|emb|CAK06061.1| putative phage-related transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 225 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 113/232 (48%), Positives = 153/232 (65%), Gaps = 18/232 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH +IWEA+DR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L Sbjct: 1 MLSHNQIWEALDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEI-----------PLLYFPPSGSGGFFDSGVFPT 111 AT ++ Q L D +E++ ++ PLL F +G+GGFFD G FP Sbjct: 61 DATGASMEQFLAFMRPDAGPSEQQARQQENAFQPQGGSIPLLGFAQAGAGGFFDDGGFPA 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV DR+ Sbjct: 121 GQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRV 173 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++ G+++AKVL+ + RSI+L+SLN +P T+E+SD++WIARI+WASQ Sbjct: 174 VVRTNEGEVMAKVLLRQSPRSIELLSLNPEHPNRTLELSDVDWIARIIWASQ 225 >gi|190890233|ref|YP_001976775.1| phage-related transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190695512|gb|ACE89597.1| putative phage-related transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 228 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 114/235 (48%), Positives = 152/235 (64%), Gaps = 21/235 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60 Query: 63 AATNETICQL--------------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 AT ++ Q + + + IPLL F +G+GGFFD G Sbjct: 61 DATGASMEQFLALLPPGGTAAERTGERAQRLDSRFQPQGGAIPLLGFAQAGAGGFFDDGG 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 FP G W+ V P S +G+YA++ Q SM+PLYR GD+LI+ QV Sbjct: 121 FPAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRN 173 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 DR++++ R G+++AKVL+ + RSI+LMSLN +P T+++SD+EWIARI+WASQ Sbjct: 174 DRVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228 >gi|225686559|ref|YP_002734531.1| Repressor protein C [Brucella melitensis ATCC 23457] gi|256111295|ref|ZP_05452321.1| DNA-binding protein RDGA [Brucella melitensis bv. 3 str. Ether] gi|265992801|ref|ZP_06105358.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|225642664|gb|ACO02577.1| Repressor protein C [Brucella melitensis ATCC 23457] gi|262763671|gb|EEZ09703.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|326410945|gb|ADZ68009.1| Repressor protein C [Brucella melitensis M28] gi|326554236|gb|ADZ88875.1| Repressor protein C [Brucella melitensis M5-90] Length = 218 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 98/227 (43%), Positives = 131/227 (57%), Gaps = 15/227 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++ Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60 Query: 63 AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 AT T + + + IPLL +G+GG+FD FP G W+ Sbjct: 61 EATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 V P + SMLPLYR GD LI+ V GDR++++ R Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218 >gi|17988843|ref|NP_541476.1| DNA-binding protein RDGA [Brucella melitensis bv. 1 str. 16M] gi|256043668|ref|ZP_05446593.1| DNA-binding protein RDGA [Brucella melitensis bv. 1 str. Rev.1] gi|265990088|ref|ZP_06102645.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|17984666|gb|AAL53740.1| DNA-binding protein rdga [Brucella melitensis bv. 1 str. 16M] gi|263000757|gb|EEZ13447.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 218 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 98/227 (43%), Positives = 131/227 (57%), Gaps = 15/227 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++ Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60 Query: 63 AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 AT T + + + IPLL +G+GG+FD FP G W+ Sbjct: 61 EATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAKAGAGGYFDDAGFPAGQGWD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 V P + SMLPLYR GD LI+ V GDR++++ R Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218 >gi|256059031|ref|ZP_05449240.1| Peptidase family S24 [Brucella neotomae 5K33] gi|261322976|ref|ZP_05962173.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261298956|gb|EEY02453.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 218 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 97/227 (42%), Positives = 130/227 (57%), Gaps = 15/227 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH+ +W AID +AER++L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++ Sbjct: 1 MFSHESVWAAIDALAERYSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60 Query: 63 AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 AT T + + IPLL +G+GG+FD FP G W+ Sbjct: 61 EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 V P + SMLPLYR GD LI+ V GDR++++ R Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+++AK+L + R+I+L SLN +P E DIEWIARILWASQ Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218 >gi|150395367|ref|YP_001325834.1| putative phage repressor [Sinorhizobium medicae WSM419] gi|150026882|gb|ABR58999.1| putative phage repressor [Sinorhizobium medicae WSM419] Length = 215 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 112/222 (50%), Positives = 147/222 (66%), Gaps = 8/222 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR +GR+RWPSTESI KIL Sbjct: 1 MLSHDSIWRAIDALAERHRLSPSGLARRAGLDPTSFNKSKRRSADGRDRWPSTESISKIL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE-IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 AT T+ Q + L + +EK+ IPL+ F +G+GGFFD G FP G W+++ P Sbjct: 61 QATGATVDQFMALMQPNAAGSEKESAPGIPLIGFAQAGAGGFFDDGGFPVGQGWDSIEFP 120 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 G YA++ Q SMLPLYR GDILI++ + QV DR++++ R G+++ Sbjct: 121 TAERRQTGAYALE-------VQGDSMLPLYRDGDILIVDPSAQVRRNDRVVVRTREGEVM 173 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 AKVL + R I+L+SLN +P EM ++EWIARI+WASQ Sbjct: 174 AKVLARQTPRGIELVSLNPDHPNRNFEMKEVEWIARIIWASQ 215 >gi|209547798|ref|YP_002279715.1| phage repressor [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533554|gb|ACI53489.1| putative phage repressor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 225 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 109/232 (46%), Positives = 142/232 (61%), Gaps = 18/232 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH +IW AIDR+AERH LTPSGLAR+AGLDPTSFNKSKR +GR RWPSTESI K+L Sbjct: 1 MLSHDQIWGAIDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60 Query: 63 AATNETICQL-----------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 AT ++ Q + IPLL F +G+GGFFD G FP Sbjct: 61 DATGASVEQFLAFLQPDAGFSKRPAGQSDGAFPPQGSSIPLLGFAQAGAGGFFDDGGFPA 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G W+ V P A ++ + Q SM+PLYR GD+LI+ QV DR+ Sbjct: 121 GQGWDVVEFPA-------APAQKSAVYALEVQGESMMPLYRDGDVLIVEPGAQVRRNDRV 173 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++ G+++AKVL+ + RSI+LMSLN +P T+E+SD++WIARI+WASQ Sbjct: 174 VVRTCEGEVMAKVLLRQSPRSIELMSLNPEHPNRTLELSDVDWIARIIWASQ 225 >gi|209966574|ref|YP_002299489.1| peptidase family S24, putative [Rhodospirillum centenum SW] gi|209960040|gb|ACJ00677.1| peptidase family S24, putative [Rhodospirillum centenum SW] Length = 214 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 11/223 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H +IW AIDR+A RH L+ SGLA++ GLDPT+FN+SKR +G+ RWPSTES+ K+L Sbjct: 1 MIKHAEIWRAIDRLAARHGLSASGLAKRGGLDPTTFNRSKRVTHDGKLRWPSTESLAKVL 60 Query: 63 AATNETICQLLD--LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ATN T L+ G+ + +P++ + +GS GFFD +P GN W+ + Sbjct: 61 EATNSTFADLVALAGDGPVGQAAPVHVQRVPVIGYAQAGSDGFFDDAGYPVGNGWDELEF 120 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + P + SM PLYR GD++I++ V GDR++++ R G++ Sbjct: 121 PHLGDP---------NAYALEISGDSMEPLYRDGDVIIVSPGASVRRGDRVVVRTREGEV 171 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +AK L ++L SLN +P T+ M+++ W+ARILWASQ Sbjct: 172 MAKQLARLTANRLELQSLNKAHPDRTLAMTEVAWMARILWASQ 214 >gi|326403286|ref|YP_004283367.1| putative peptidase S24 [Acidiphilium multivorum AIU301] gi|325050147|dbj|BAJ80485.1| putative peptidase S24 [Acidiphilium multivorum AIU301] Length = 223 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 116/227 (51%), Gaps = 11/227 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL- 62 H+ IW AID +A + L+ S LAR AGLDPTSFN SKR +GR RWPSTESI KIL Sbjct: 1 MQHEDIWRAIDALAAQRGLSASALARSAGLDPTSFNPSKRRTPDGRLRWPSTESIAKILS 60 Query: 63 ------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 A + P R + +PL +G GGFFD G PTG W+ Sbjct: 61 ASSIGIEAFAALVGGRSTTPAGTSRPRRPAVRTVPLASLAQAGQGGFFDEGGNPTGGGWD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + +P + A Q SM P+YR GDI++++ A V GDR++I+ Sbjct: 121 RIALPVG----DAGIAGDPHAFALTIQGDSMDPVYRDGDIIVVSPASPVRTGDRVVIRTA 176 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+++A+ L+ R +DL N YP +I + RI+WASQ Sbjct: 177 GGEVMARQLLRRTVSRVDLGCFNPAYPPRGFMTEEIGALHRIVWASQ 223 >gi|148259746|ref|YP_001233873.1| putative phage repressor [Acidiphilium cryptum JF-5] gi|146401427|gb|ABQ29954.1| putative phage repressor [Acidiphilium cryptum JF-5] Length = 223 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 115/227 (50%), Gaps = 11/227 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL- 62 H+ IW AID +A + L+ S LAR AGLDPTSFN SKR +GR RWPSTESI KIL Sbjct: 1 MQHEDIWRAIDALAAQRGLSASALARSAGLDPTSFNPSKRRTPDGRLRWPSTESIAKILS 60 Query: 63 ------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 A + P R + +PL +G GFFD G PTG W+ Sbjct: 61 ASSIGIEAFAALVGGRSTTPAGTSRPRRPAMRTVPLASLAQAGQDGFFDEGGNPTGGGWD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + +P + A Q SM P+YR GDI++++ A V GDR++I+ Sbjct: 121 RIALPVG----DAGIAGDPHAFALTIQGDSMDPVYRDGDIIVVSPASPVRTGDRVVIRTA 176 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+++A+ L+ R +DL N YP +I + RI+WASQ Sbjct: 177 GGEVMARQLLRRTVSRVDLGCFNPAYPPRGFMTEEIGALHRIVWASQ 223 >gi|295687529|ref|YP_003591222.1| putative phage repressor [Caulobacter segnis ATCC 21756] gi|295429432|gb|ADG08604.1| putative phage repressor [Caulobacter segnis ATCC 21756] Length = 214 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 13/225 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESI 58 M + SH +IW AID +A+R ++TPS +AR AGLDPTSFN+SKR +GR RWPSTES+ Sbjct: 1 MATLSHGEIWRAIDALADRFDMTPSAMARMAGLDPTSFNRSKRGSTEADGRARWPSTESL 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K+L AT + L ++ PL+ +G GFFD+ P G+ W+ V Sbjct: 61 AKLLEATGVNFSEFAALTEQSPGAGAGGKRGAPLIGLAQAGQEGFFDAAGMPVGSGWDEV 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 P+ + + ++ P+YR GD L+++ ++ GDR++ + G Sbjct: 121 AAPD----------LGQGLFALEVSGETLAPVYRDGDRLLVSPTVEPRKGDRVVARTHAG 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++ + L R+I+L++L + ++ WIARI+WASQ Sbjct: 171 EVLVRELGRVTARTIELLAL-GRESDRLLSRDEVAWIARIVWASQ 214 >gi|315122107|ref|YP_004062596.1| bacteriophage repressor protein C1 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495509|gb|ADR52108.1| bacteriophage repressor protein C1 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 216 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 180/223 (80%), Positives = 194/223 (86%), Gaps = 7/223 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT FSH+KIWEAID+MA+RHNLTPSGLARKAGLDPTSFNKSKRFG+EGRNRWPSTESI K Sbjct: 1 MTKFSHEKIWEAIDQMAKRHNLTPSGLARKAGLDPTSFNKSKRFGVEGRNRWPSTESISK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL ATNETICQ + F + + EKKEKEIPLL FPPS S GFFDSG FP GNKWNTVGV Sbjct: 61 ILEATNETICQFFGILFLEEKNIEKKEKEIPLLDFPPSESSGFFDSGGFPAGNKWNTVGV 120 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 PEIRSPHNGIYA + QDTSMLPLYRKGDILILN+AIQVNCGDR+LIKP GDI Sbjct: 121 PEIRSPHNGIYA-------IQIQDTSMLPLYRKGDILILNAAIQVNCGDRVLIKPHEGDI 173 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 AKVLIS+RGRSIDLMSLNCCYPVDT++ SDIEWIA+ILWASQ Sbjct: 174 EAKVLISQRGRSIDLMSLNCCYPVDTIDASDIEWIAKILWASQ 216 >gi|254690871|ref|ZP_05154125.1| Peptidase family S24 [Brucella abortus bv. 6 str. 870] gi|260756453|ref|ZP_05868801.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260676561|gb|EEX63382.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] Length = 218 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 97/227 (42%), Positives = 130/227 (57%), Gaps = 15/227 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+ +GR RWPSTES+ K++ Sbjct: 1 MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60 Query: 63 AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 AT T + + IPLL +G+GG+FD FP G W+ Sbjct: 61 EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 V P + SMLPLYR GD LI+ V GDR++++ R Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+++AK+L + R+I+L SL+ +P E DIEWIARILWASQ Sbjct: 172 DGEVMAKILHRQTPRTIELHSLDPEHPNRIFESKDIEWIARILWASQ 218 >gi|328544878|ref|YP_004304987.1| peptidase S24-like domain protein [polymorphum gilvum SL003B-26A1] gi|326414620|gb|ADZ71683.1| Peptidase S24-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 215 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 12/224 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH+++W AID +A R L+PSGLAR+AGLDPT+FN SKR +GR RWPSTES+ K+L Sbjct: 1 MLSHERVWAAIDALATRKGLSPSGLARRAGLDPTTFNPSKRIAGDGRPRWPSTESLAKVL 60 Query: 63 AATNETICQLL---DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 AT + + + +D +P G+FD P G W+ + Sbjct: 61 EATGAPLAEFVALAAPLETDSAPPATSPMTVPFAGLDRVACEGYFDPTGNPIGRNWDEIP 120 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P++R + ++LP+YR GDIL++ + V GDR+++K ++G+ Sbjct: 121 FPDLRGEI---------LYALEVSGNALLPVYRDGDILVVAPDVPVRRGDRVIVKVKSGE 171 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++ ++L R R+++L SL V E+ IEWIARI+WASQ Sbjct: 172 VIIRLLHRRTARTVELHSLAPSGTVHQCELDSIEWIARIVWASQ 215 >gi|16124337|ref|NP_418901.1| hypothetical protein CC_0082 [Caulobacter crescentus CB15] gi|221233019|ref|YP_002515455.1| LexA-like transcriptional repressor [Caulobacter crescentus NA1000] gi|13421181|gb|AAK22069.1| hypothetical protein CC_0082 [Caulobacter crescentus CB15] gi|220962191|gb|ACL93547.1| LexA-related transcriptional repressor [Caulobacter crescentus NA1000] Length = 213 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIF 59 M + SH +IW AID +AER ++TPS +AR AGLDPTSFN+SKR E G RWPSTES+ Sbjct: 1 MATLSHGEIWRAIDALAERFDMTPSAMARMAGLDPTSFNRSKRGSAETGHARWPSTESLS 60 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K+L AT + L + PL+ +G GFFD P G W+ Sbjct: 61 KLLEATGVNFSEFAALTER-SPVRAPGRRGAPLIDLAQAGKDGFFDEAGMPVGAGWDEAP 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + + + P+YR GD L+++ ++ GDR++ + G+ Sbjct: 120 APD----------LGEGLFALEVTGDDLAPVYRDGDRLLVSPTLEPRKGDRVVTRTHGGE 169 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++ + L RSI+L++L+ + ++ WIARI+W SQ Sbjct: 170 VLVRELGRVTARSIELLALDRVSGERLLSRDEVAWIARIVWVSQ 213 >gi|302383458|ref|YP_003819281.1| phage repressor [Brevundimonas subvibrioides ATCC 15264] gi|302194086|gb|ADL01658.1| putative phage repressor [Brevundimonas subvibrioides ATCC 15264] Length = 211 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 17/224 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFK 60 S SH ++W A+D +A R L+ S LARKAGLD T+FN SKRFG R RWPSTES+ Sbjct: 2 SLSHDRLWTALDTLARRQGLSSSALARKAGLDATAFNPSKRFGPGVPPRPRWPSTESLNL 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL AT ++ + L + PLL +G+ GFFD PTG+ W + Sbjct: 62 ILEATGTSLAEFAALAD----DAPARIATAPLLGMAQAGADGFFDDAGLPTGDGWEQTDL 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGD 179 P + + SM+PLYR+GD ++++ V GDR++ + R+G+ Sbjct: 118 P----------SPKESLFSLLISGDSMVPLYREGDRVLVDRERTDVRKGDRVVARTRSGE 167 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +AK + + R++ L S+N YP + +D++W+ARILW SQ Sbjct: 168 TLAKQIEALTARTVTLASINPAYPPRVLARADVDWMARILWVSQ 211 >gi|254420759|ref|ZP_05034483.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3] gi|196186936|gb|EDX81912.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3] Length = 211 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 118/224 (52%), Gaps = 17/224 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFK 60 SH K+W+A+D +A R L+PSGLAR+AGLD TSFN SKRFG R RWPSTES+ Sbjct: 2 PLSHAKLWKAVDALARREGLSPSGLARRAGLDATSFNPSKRFGAGDPPRPRWPSTESMTL 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L AT ++ + L +PLL +G GFFD P G+ W+ + Sbjct: 62 MLQATGVSLAEFAALAD----DAPPTSTTVPLLGLARAGLDGFFDDAGLPVGDGWDQTEL 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGD 179 P + + SM PLYR+GD +I++ GDR++ + +G+ Sbjct: 118 PR----------VNATTFSLRISGDSMAPLYREGDRVIVDRGDPAVRRGDRVVARLTSGE 167 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +VAK L R+ L S+N YP V +IEW+ARILW SQ Sbjct: 168 VVAKELTGLTARAATLSSINPDYPPRIVPRREIEWMARILWVSQ 211 >gi|90418702|ref|ZP_01226613.1| putative transcription regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336782|gb|EAS50487.1| putative transcription regulator [Aurantimonas manganoxydans SI85-9A1] Length = 215 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 97/224 (43%), Positives = 135/224 (60%), Gaps = 12/224 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH +IW AID +A RH ++PSGLAR+AGLDPT+FNKSKR +GR RWPSTESI K++ Sbjct: 1 MFSHDRIWLAIDALATRHRMSPSGLARRAGLDPTTFNKSKRNASDGRPRWPSTESIAKVI 60 Query: 63 AATNETICQL---LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 AAT +I + + + +PLL F +G GGFFD FP G W+ + Sbjct: 61 AATGTSIEEFAALMRGETPGVPRSPSPAMSVPLLGFAEAGGGGFFDDSGFPAGQGWDEIA 120 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 +P + SM+PLYR GDILI++ A V GDR++++ R G+ Sbjct: 121 LPSTGDE---------TVYALEVSGQSMMPLYRDGDILIVSPAAAVRRGDRVVVRTREGE 171 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++AK+L + R+I+L S N +P +M ++EW+ARILWASQ Sbjct: 172 VMAKILQRQTSRTIELASTNPDFPDRQFQMDEVEWMARILWASQ 215 >gi|27376249|ref|NP_767778.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349389|dbj|BAC46403.1| bll1138 [Bradyrhizobium japonicum USDA 110] Length = 217 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 122/220 (55%), Gaps = 13/220 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +H +IW A+DR+A R L+PSGLA++AGLDPT+FN+SKR +GR RWPSTESI K LA Sbjct: 11 LTHDQIWVALDRLAARAGLSPSGLAKRAGLDPTTFNRSKRVTSDGRERWPSTESIAKALA 70 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + +D+ + +PLL +G+ G FD P+G W + +P Sbjct: 71 AAGAS----IDVFAGLISDETGNSRSVPLLGLAQAGASGAFDESGLPSGKGWTELALPT- 125 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 A +Q + ++ P YR GD+++++ + GDR+++ + G++ Sbjct: 126 --------AEDSQTFALEIAGDALAPTYRNGDVILVSPGTPIRKGDRVVVTTKAGEVTVA 177 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 L R +++DL+ L+ T+ ++ W+ARI+WASQ Sbjct: 178 TLKRRTAKALDLLPLDASQAERTIAAGELAWVARIVWASQ 217 >gi|296532329|ref|ZP_06895067.1| S24 family peptidase [Roseomonas cervicalis ATCC 49957] gi|296267353|gb|EFH13240.1| S24 family peptidase [Roseomonas cervicalis ATCC 49957] Length = 216 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 127/225 (56%), Gaps = 14/225 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H IW A+D +A H L+PSGLARKAGLDPT+FN SKR G +GR RWPSTES+ KILA Sbjct: 1 MRHDDIWRAVDALAAEHGLSPSGLARKAGLDPTAFNPSKRLGTDGRARWPSTESVAKILA 60 Query: 64 ATNETICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 AT + L + + IPL+ +G G+F G +P G W+ + Sbjct: 61 ATGTDMESFAALVTGAAAALNRSPRSMPGRRIPLIGLAQAGGDGYFGDGGYPVGAGWDEI 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 PE+ P + SM P++R GDI+I++ V GDR++++ G Sbjct: 121 STPELSDP---------NAYALEISGDSMEPVFRDGDIIIVSPNAPVRRGDRVVVRTLKG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +++AK L+ + R I+L SLN +P + ++++I WI RILWASQ Sbjct: 172 EVMAKELLRQSARRIELASLNPAHPGYSFDLAEIAWIHRILWASQ 216 >gi|304394055|ref|ZP_07375978.1| dna-binding protein rdga [Ahrensia sp. R2A130] gi|303293495|gb|EFL87872.1| dna-binding protein rdga [Ahrensia sp. R2A130] Length = 232 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 29/241 (12%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSHK++W AID +A+ ++++ S LAR AGLD T+FNKSKR G +GR RWPSTES+ KI+ Sbjct: 1 MFSHKQVWAAIDALAQDNDMSVSKLARTAGLDATTFNKSKRIGADGRQRWPSTESLSKIM 60 Query: 63 AATNETICQLLDLPFS--------------------DGRTTEKKEKEIPLLYFPPSGSGG 102 AT I + IPLL +GSGG Sbjct: 61 DATKTDIDGFMATMRDGQASFAAGFAGMSETGGTYVPDAPGHPVPVSIPLLGLAQAGSGG 120 Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 FFD PTG W V P+ + + + SM PLYR GD ++++ Sbjct: 121 FFDDAGLPTGEGWEAVEFPQ---------SDREPLYALEIAGDSMEPLYRDGDRIVVSPT 171 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 V GDR++++ G+I+AK L + ++++L S N + T ++++++W+ARI+W S Sbjct: 172 ASVRRGDRVVVRTSDGEIMAKTLARQTAKTVELDSENPEHQKRTFDLTEVDWVARIMWVS 231 Query: 223 Q 223 Q Sbjct: 232 Q 232 >gi|254504422|ref|ZP_05116573.1| Peptidase S24-like domain protein [Labrenzia alexandrii DFL-11] gi|222440493|gb|EEE47172.1| Peptidase S24-like domain protein [Labrenzia alexandrii DFL-11] Length = 221 Score = 168 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 13/224 (5%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 SH+K+W AID +A + +TPSGLA++AGLDPT+FN+SKRF +GR RWPSTES+ KI Sbjct: 9 PMLSHEKVWAAIDALASYNEMTPSGLAKRAGLDPTTFNRSKRFAGDGRPRWPSTESLAKI 68 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L AT E++ + +P+ F FD+ PTG W T+ P Sbjct: 69 LEATGESLKSFAGRVEAPELRPSTTLSALPVAGFSNVHEENAFDTTGRPTGEHWETIVFP 128 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + ++LPLYRKGD++++ + V GDR+++KP G + Sbjct: 129 TDHTQ---------NIFALEVSGDALLPLYRKGDLIVVAPSAAVRRGDRIVLKPSEGGLA 179 Query: 182 AKVLISRRGRSIDL--MSLNCCYPVDTVEMSDIEWIARILWASQ 223 L+ R +++ + + N + S IEW ARI+WASQ Sbjct: 180 VYTLLKRTPKTLQVQTIGDNP--ENAALLHSAIEWTARIIWASQ 221 >gi|307941488|ref|ZP_07656843.1| peptidase family S24 [Roseibium sp. TrichSKD4] gi|307775096|gb|EFO34302.1| peptidase family S24 [Roseibium sp. TrichSKD4] Length = 218 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 15/227 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SHK+IW AID +A R+ L+PSGLAR+AGLDPT+FN SKRFG +GR RWPSTES+ KIL Sbjct: 1 MLSHKQIWAAIDTLAARNGLSPSGLARRAGLDPTTFNPSKRFGGDGRPRWPSTESLSKIL 60 Query: 63 AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 AT E++ L++ + + +P+ F + FD P+ W+ Sbjct: 61 QATGESLETLMEVLLGLAPTGPRAAPLAQDGRMVPIAGFSDANQQAAFDPTGRPSSPMWD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 ++ P+ + + + P YR GDILI+ + GDR+L++ Sbjct: 121 SLLFPDP---------KEKNLFALEINSDDLTPYYRSGDILIVAPVQAIRRGDRVLVRQT 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 +G + ++ + + D +L + +E + I+W+AR++W SQ Sbjct: 172 SGALQLFLMDRQNPSAFDFHALTPPHETVHLERTKIDWVARVMWVSQ 218 >gi|118589338|ref|ZP_01546744.1| repressor protein CI [Stappia aggregata IAM 12614] gi|118438038|gb|EAV44673.1| repressor protein CI [Stappia aggregata IAM 12614] Length = 227 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 110/222 (49%), Gaps = 11/222 (4%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T SH+K+W AID +A ++ LTPSGLAR+AGLDPT+FN SKR +GR RWPSTES+ K+ Sbjct: 17 TVLSHEKVWAAIDALASQNGLTPSGLARRAGLDPTAFNPSKRVAGDGRPRWPSTESLAKV 76 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 LAAT E + ++ + +P+ + FD+ P+G W P Sbjct: 77 LAATGEALNTFAARVETEDAPSGSVPALVPVAALEAASDRNAFDAAGRPSGATWQQFSFP 136 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + PLYR GDI+++ + GDRL +K +G + Sbjct: 137 Q-----------PGASFALQVSNEDFQPLYRNGDIVVVAPDAPLRTGDRLALKLTSGRLS 185 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 L G + + ++ S IEW ARI+WASQ Sbjct: 186 LYTLQEAGGEELSVRTIGENSHSLRFRHSAIEWTARIIWASQ 227 >gi|114569067|ref|YP_755747.1| putative phage repressor [Maricaulis maris MCS10] gi|114339529|gb|ABI64809.1| putative phage repressor [Maricaulis maris MCS10] Length = 208 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 15/222 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKI 61 +H IW IDR+A +PSGLAR+AGLD T+FN SKR +G + RWPSTESI K Sbjct: 1 MLTHDDIWRGIDRLARHAQTSPSGLARRAGLDSTTFNPSKRISADGTKPRWPSTESIAKA 60 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 LAA + L RT + FD+ +P G W+ + P Sbjct: 61 LAAAHLDFDDFAGLISGQPRTGALPSRA-----LADGEEQDPFDATGYPAGPDWDAIPFP 115 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + QDT MLP+YR GD L+++ GDR++++ R G Sbjct: 116 GLA---------PGEAFALTVQDTHMLPVYRPGDRLVVSHEAPTRVGDRVVVQRRDGSRS 166 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 A L + +++ L L+ P T+ ++ + W+ARI+W SQ Sbjct: 167 AWTLSEKTVQALRLAPLDPLQPALTLPLTQVAWLARIVWVSQ 208 >gi|220924406|ref|YP_002499708.1| peptidase S24/S26 domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219949013|gb|ACL59405.1| peptidase S24/S26 domain-containing protein [Methylobacterium nodulans ORS 2060] Length = 209 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 104/219 (47%), Gaps = 12/219 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH++IW AID +A+RH LTPSGLAR+AGLD TSFN+SKR +GR RWPSTES+ KIL Sbjct: 1 MLSHERIWLAIDHLAQRHGLTPSGLARRAGLDATSFNRSKRIAPDGRKRWPSTESLAKIL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AT ++ L L I G P G W + P+ Sbjct: 61 TATGASLDDFLQLVEPRPAPPPAILPLIGSAALAAGRRIG---PDGRPAGAGWEEMEFPD 117 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + Q +LPLY GD+L++ + GDR L+ + A Sbjct: 118 LGAQ---------SCFAIEVQGEGLLPLYHDGDVLVVCATAPARRGDRTLVCLDGEGLFA 168 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 L R R+ + PV TV + I W+AR++W Sbjct: 169 ADLRRRTVRTTEFAGRTPGEPVRTVPTARIAWMARVMWV 207 >gi|254471620|ref|ZP_05085021.1| dna-binding protein rdga [Pseudovibrio sp. JE062] gi|211958822|gb|EEA94021.1| dna-binding protein rdga [Pseudovibrio sp. JE062] Length = 214 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 102/221 (46%), Gaps = 7/221 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H+ +W A+D+MA+RH LTPSGLAR+AGLDPTSFN SKRF +GR RWPSTES+ K+L Sbjct: 1 MLDHENLWAALDKMAKRHQLTPSGLARRAGLDPTSFNPSKRFAADGRPRWPSTESLAKVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T T L + + P + + + + Sbjct: 61 EVTQMTFVDFAGLLQDKTEISGTHFRSFP----AYLCTSDELREVDLEDLSGFQLDKFCD 116 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + + S P YR+G ILI++ + D +LI +TGD+ Sbjct: 117 SFIFPS---SQSEKFFALEVSSNSFEPYYREGQILIVSPESSLRRNDHVLIATKTGDLHC 173 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 L + I+ V+++D+ W ARILW SQ Sbjct: 174 GPLQRQTNERIEFRRHTPDDTPRVVQVADLVWTARILWVSQ 214 >gi|170741440|ref|YP_001770095.1| peptidase S24/S26 domain-containing protein [Methylobacterium sp. 4-46] gi|168195714|gb|ACA17661.1| peptidase S24 and S26 domain protein [Methylobacterium sp. 4-46] Length = 209 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 81/219 (36%), Positives = 117/219 (53%), Gaps = 12/219 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH +IW AID +A+RH LTPSGLA++AGLDPTSFN+SKR +GR RWPSTES+ KIL Sbjct: 1 MLSHDRIWSAIDHLAQRHRLTPSGLAKRAGLDPTSFNRSKRVAPDGRRRWPSTESLAKIL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AAT T+ + + L +PL+ G PTG+ W+ + P+ Sbjct: 61 AATGATLDEFVQLVS---PRAAAGAAVVPLIGSAALAVAGRIGPDGRPTGSAWDELDFPD 117 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + Q + PLY GD+L++ + + GDR+L+ RTG +V Sbjct: 118 LGTQ---------DCFAIEVQGNDLRPLYHDGDVLVVCATAPMRRGDRILVSLRTGALVG 168 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 VL R R DL + ++ ++I W+ARI+W Sbjct: 169 AVLRRRTARVADLAPVMPGEAARSIATAEIAWMARIMWV 207 >gi|114328547|ref|YP_745704.1| DNA-binding protein RDGA [Granulibacter bethesdensis CGDNIH1] gi|114316721|gb|ABI62781.1| DNA-binding protein RDGA [Granulibacter bethesdensis CGDNIH1] Length = 221 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 106/225 (47%), Gaps = 9/225 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H+ IW AID +A L+ SGLAR+AGLD T+FN SKR +GR RWPSTESI KIL Sbjct: 1 MKHEDIWRAIDTLAAIKGLSTSGLARRAGLDATTFNLSKRQMPDGRQRWPSTESISKILV 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 AT E++ L + + P S G +P Sbjct: 61 ATGESLGAFTSLVNGAETLSADSGQNTHYGRRIPLFSLPELRDLPIK-GEGN---ALPSA 116 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG----- 178 R + + + DTS+ PL+R+G ILI++ + GDR++++ Sbjct: 117 RDETSLPDVADREAYGIEIHDTSLAPLFREGTILIVSPNAPLRRGDRVIVRLAAHDGEPS 176 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + V R R +D+ SLN ++ ++ + WI RI+WASQ Sbjct: 177 ETVFGHFHRRSARWMDISSLNGDKAERSISLTSLVWIHRIVWASQ 221 >gi|160932990|ref|ZP_02080379.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] gi|156868064|gb|EDO61436.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] Length = 222 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 21/213 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E L+ G A K G+ ++ + +R P+ +++ +I ++ Sbjct: 20 RLKELRENAGLSQYGFAEKIGISQSTVGNWEAG-----SREPNFKTMERIADFFGVSVDY 74 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 LL G E + G P G + Sbjct: 75 LLGRETVAGGPPEPSVPGSKWIPVI----------GTIPAGTPVEAIEDILDYEEITPQM 124 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 A Q + K + SM P GD++I+ G+ ++ + K + + Sbjct: 125 ASQGEHFALKIKGQSMEPKISDGDVVIVRKQDDCENGEIAVVLVNGDEATVKRI-KKGPE 183 Query: 192 SIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219 + L+ N Y ++IE I +++ Sbjct: 184 GLMLIPNNPAYEPMFYSNAEIESLPVSIIGKVV 216 >gi|238021090|ref|ZP_04601516.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147] gi|237868070|gb|EEP69076.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147] Length = 351 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 61/237 (25%), Gaps = 25/237 (10%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 SH + + + E+ ++ L + ++ + +G +I KI Sbjct: 118 SHSTLKDRLIYAREQKGISQEQLGKAINKSQSAIAALETGRNQGST------NIAKIAEV 171 Query: 65 TNETICQLLDLPFSDGRTTEKK-------------EKEIPLLYFPPSGSGGFFDSGVFPT 111 + L + L F Sbjct: 172 LGVSAIWLETGQGEMYPQSTTPRINEITDIHRPILWSSNTPLPEDDYVFVPFLKETELRG 231 Query: 112 GNKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 G + +P +S + + SM P + + ++ I+ Sbjct: 232 GAGSFEIPDYNGFRLPFGKSTLHRKGIMPDNVICCTLTGDSMEPRIPEYATIAVDKGIER 291 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 ++ K L G + + S N Y + V +I I R+ W S Sbjct: 292 IRDGKIYAFQHDDLFRVKYLYRLPGNKVRIRSDNENYEDEIVSGEEIRVIGRVFWWS 348 >gi|330992988|ref|ZP_08316928.1| hypothetical protein SXCC_02890 [Gluconacetobacter sp. SXCC-1] gi|329759941|gb|EGG76445.1| hypothetical protein SXCC_02890 [Gluconacetobacter sp. SXCC-1] Length = 223 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 74/183 (40%), Gaps = 12/183 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH IW AIDR+A LTPSGLAR AGLD T+FN SKR GR RWP TES+ + L Sbjct: 1 MISHDDIWRAIDRLAAERGLTPSGLARAAGLDSTTFNPSKRITPSGRPRWPGTESLARTL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL---YFPPSGSGGFFDSGVFPTGNKWNTVG 119 +AT + L L F FD P G +W Sbjct: 61 SATGISFEGFSRLLSGHHDPETTNRAHHSHLKIAPFSQLAHPELFDETGLPEGERWEKWE 120 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + H +M P++RKG L+++ + DR+L+ G Sbjct: 121 FHGMADHH---------SYAVHVDCDTMEPIFRKGGTLVVSPTAAIRVHDRVLLHTPQGT 171 Query: 180 IVA 182 Sbjct: 172 ACC 174 >gi|229528221|ref|ZP_04417612.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|261212926|ref|ZP_05927210.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297580070|ref|ZP_06941997.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] gi|229334583|gb|EEO00069.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|260837991|gb|EEX64668.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297535716|gb|EFH74550.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] Length = 237 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 25/239 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I E I R+ + LT +A G+ PTS +R P ++ + Sbjct: 1 MTRETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETT-----PKGSNLIALCK 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGNKWN 116 L + T E + + + G F GN + Sbjct: 56 KLRVDPLWLQTGKGTQDSTAGNAELLGNMQVWDSNTPLGDDEVAVPFLSDVRLSAGNGFV 115 Query: 117 TVGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + + + SM P+ G + ++ + Sbjct: 116 SDSESDNGFRLRFAKSTLRRYNVDPENAVCVAITGDSMEPVLPNGSTVGIDCGDKTLIDG 175 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIE-----WIARILWAS 222 ++ G++ K L G + + S N YP + + R+ W S Sbjct: 176 KIYAINHNGELFIKKLYRLPGGGLRIYSFNEIEYPPREYSQEQVAEQQISIVGRVFWYS 234 >gi|295103878|emb|CBL01422.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii SL3/3] Length = 210 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 17/211 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ ++ + LA + G+ + K + P ++ +I N T L Sbjct: 7 LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKS-----SPDPSTVARIAELLNTTADYL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L L + +E+ G + + E Sbjct: 62 LGLYRPVSNVSAPEERFFGSYTESLIPVIGT-------VKAGYGALAFEEDYGQEYARVK 114 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191 + + SM P + GD+ +++ + GD +LI G+ K I +RG Sbjct: 115 DPSNYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLIYGDEGEGTLKRYI-QRGN 173 Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + L N Y + D + R++ Sbjct: 174 CVVLQPFNPAYHEMVIRGEDLNHLHIAGRVV 204 >gi|160942797|ref|ZP_02090038.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] gi|158445962|gb|EDP22965.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] Length = 210 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 17/211 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ ++ + LA + G+ + K + P ++ +I N T L Sbjct: 7 LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKS-----SPDPSTVARIAELLNTTADYL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L L + +E+ G + + E Sbjct: 62 LGLYRPVSNVSAPEERFFGSYTESLIPVIGT-------VKAGYGALAFEEDYGQEYARVK 114 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191 + SM P + GD+ +++ + GD +LI G+ K I +RG Sbjct: 115 DPANYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLIYGDEGEGTLKRYI-QRGN 173 Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + L N Y + D + R++ Sbjct: 174 CVVLQPFNPAYHEMVIRGEDLNHLHIAGRVV 204 >gi|313114612|ref|ZP_07800120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623076|gb|EFQ06523.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 210 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 17/211 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ ++ + LA K G+ + K + P ++ +I N T L Sbjct: 7 LKQCRKKQGISQAELASKLGVTQQAVGKWESGKS-----SPDPSTVARIAELLNTTADYL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L L + +E+ G + + E Sbjct: 62 LGLYRPVSNVSAPEERFFGSYSESLIPVIGT-------VKAGYGALAFEEDYGQEYARVK 114 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191 + + SM P + GD+ +++ + GD +LI G+ K I +RG Sbjct: 115 DPSNYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLIYGDEGEGTLKRYI-QRGN 173 Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + L N Y ++ D + R++ Sbjct: 174 CVVLQPFNPAYSEMVIKGEDLNHLHIAGRVV 204 >gi|153001880|ref|YP_001367561.1| putative phage repressor [Shewanella baltica OS185] gi|151366498|gb|ABS09498.1| putative phage repressor [Shewanella baltica OS185] Length = 229 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 21/228 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + + T +A+K GL + + + P E++ + A + + Sbjct: 4 ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGST-----SPKGENLHALAKALSCSPE 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNKW-NTVGV--- 120 LL + + ++ + F+ G+ ++ Sbjct: 59 YLLFGNKETKPESNAEWAGGFEIWDSDTPLGEDEVEIPFYMEVELAAGDGILDSREFKGP 118 Query: 121 --PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +S K SM P+ + ++++ ++ G Sbjct: 119 KLRFTKSTLKRQGVNSDYAACVKVNGNSMEPILPHSSTVGVDTSATDVIDGKMYAVNHDG 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS---DIEWIARILWAS 222 + KVL G + L S N YP + ++ ++ I ++ W S Sbjct: 179 MLRIKVLYKLPGGGLRLRSYNTDEYPDERLDAEQVKQVKVIGKVFWYS 226 >gi|262402969|ref|ZP_06079529.1| predicted transcriptional regulator [Vibrio sp. RC586] gi|262350468|gb|EEY99601.1| predicted transcriptional regulator [Vibrio sp. RC586] Length = 237 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 25/239 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I E I R+ + LT +A G+ PTS +R P ++ + Sbjct: 1 MTRETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETT-----PKGSNLIALCK 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGNKWN 116 L + T E + + + G F GN + Sbjct: 56 KLRVDPLWLQTGKGTQDSTAGNAELLGNMQVWDSNTPLGDDEVAVPFLSDVRLSAGNGFV 115 Query: 117 TVGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + + + SM P+ G + ++ + Sbjct: 116 SDSESDNGFRLRFAKSTLRRYNVDPENAVCVAITGDSMEPVLPNGSTVGIDCGDKTLIDG 175 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDT-----VEMSDIEWIARILWAS 222 ++ G++ K L G + + S N YP V I + R+ W S Sbjct: 176 KIYAINHNGELFIKKLYRLPGGGLRIYSFNEIEYPPREYLQEQVAEQQISIVGRVFWYS 234 >gi|315650040|ref|ZP_07903120.1| LexA repressor [Eubacterium saburreum DSM 3986] gi|315487810|gb|EFU78113.1| LexA repressor [Eubacterium saburreum DSM 3986] Length = 213 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 72/216 (33%), Gaps = 16/216 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + L+ +A + G + + + + IE + E I KIL T Sbjct: 3 IGERIKQRRRELGLSVDEVADRLGKNRATVYRYESNDIENFPVG-TLEPIAKILETTPAK 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + E EK + + P + + EI + Sbjct: 62 LMGWNSNDNLPNGNPEPHEKPRGVKIPVLGDV-----AAGIPIEAIEDIIDYEEI----D 112 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 A + + + + SM P + GD++I+ + GD ++ K D K L Sbjct: 113 EDLARRGEFFGLRIKGNSMSPRIQNGDVVIVRVQPDADSGDIVITKVNGYDACCKRLQKH 172 Query: 189 RGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219 I L+SLN Y D + I +++ Sbjct: 173 DDG-ISLISLNPDYEPMFFSKKDIIDLPVNIIGKVV 207 >gi|160876601|ref|YP_001555917.1| putative phage repressor [Shewanella baltica OS195] gi|160862123|gb|ABX50657.1| putative phage repressor [Shewanella baltica OS195] gi|315268797|gb|ADT95650.1| putative phage repressor [Shewanella baltica OS678] Length = 229 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 21/228 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + + T +A+K GL + + + P E++ + A + + Sbjct: 4 ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGST-----SPKGENLHALAKALSCSPE 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNKW-NTVGV--- 120 LL + + ++ + F+ G+ ++ Sbjct: 59 YLLFGNKETKPESNAEWAGGFEIWDSDTPLGEDEVEIPFYMEVELAAGDGILDSREFKGP 118 Query: 121 --PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +S K SM P+ G + ++++ ++ G Sbjct: 119 KLRFTKSTLKRQGVNSDYAACVKVNGNSMEPILPHGSTVGVDTSATDVIDGKMYAVNHDG 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI---EWIARILWAS 222 + KVL G + L S N YP + ++ + + I ++ W S Sbjct: 179 MLRIKVLYKLPGGGLRLRSYNTDEYPDERLDTDQVKQIKVIGKVFWYS 226 >gi|220935647|ref|YP_002514546.1| putative phage repressor [Thioalkalivibrio sp. HL-EbGR7] gi|219996957|gb|ACL73559.1| putative phage repressor [Thioalkalivibrio sp. HL-EbGR7] Length = 230 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 25/230 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + + LA++ G+ S +R R P + + K++ A Sbjct: 5 IGERIAHIRGSR--SQAALAQQLGVHKNSIGNYERGE-----RTPDADFLRKLMDAGYNA 57 Query: 69 IC----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--------WN 116 + + E + + G+ + Sbjct: 58 NWVITGEGPMRLGEPEPAAPQAAPEHMIQEVGEEYALVPLYDVRAAAGHGAVVEEEQVTD 117 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKP 175 ++ H ++A SM P R GD+++++ + Q D + + Sbjct: 118 SLAFKRQWI-HQELHANPADLYLIYVDGESMEPTLRPGDVILVDRRSAQAVPRDGIYVLR 176 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV----EMSDIEWIARILWA 221 G ++ K L GR + + S N Y + D+ I R++W+ Sbjct: 177 MDGSLLVKRLQRLPGRKVKVTSDNPAYEPFELALDTPGEDLAIIGRVVWS 226 >gi|170023456|ref|YP_001719961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169749990|gb|ACA67508.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] Length = 209 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 82/210 (39%), Gaps = 14/210 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + I R E +++ + LA++ G ++S+ E +R S E + A N Sbjct: 2 ETIGQRIKRFREELSISQAELAQRCGW----LSQSRIGNYETDSRKVSVEDAVVLAKALN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L+ + T E+ +PL+ + +G+ + V S Sbjct: 58 VNPGELILGTPDNASFTSAGERYLPLVSYVQAGTFTEP-DNLLSAEGAKGHVMYDGPISE 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 K + SM P +++GD +I++ + + G+ ++ K + K Sbjct: 117 V---------AFALKIKGDSMEPEFKEGDTIIIDPMVAPHPGEFVIAKNGDHEATFKKYR 167 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + S +L+ LN YP ++ ++ I Sbjct: 168 LKANGSFELVPLNPDYPTIDSDIQPVKIIG 197 >gi|254240372|ref|ZP_04933694.1| hypothetical protein PA2G_01019 [Pseudomonas aeruginosa 2192] gi|126193750|gb|EAZ57813.1| hypothetical protein PA2G_01019 [Pseudomonas aeruginosa 2192] Length = 243 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 71/237 (29%), Gaps = 29/237 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + H ++P+ L+R+ G+ ++ ++ G+ P E ++ I + Sbjct: 6 IQHILAALLAEHGISPTELSRRTGVGQSTISRILN----GKIATPKDEQVYPIAEYFGLS 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKW 115 QL +E P F G+ Sbjct: 62 TDQLRGRVSIGTAPIPAVVREPEATMDGPIEVWDDSTPLPSDEVLVPFLKEVELAAGSGK 121 Query: 116 NTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 +V + RS G Y++ SM P+ R G + ++ Sbjct: 122 MSVEMNSRRSLRFGKYSLKKQGVDPANARCVTITGNSMEPVLRNGATVGVDVGNTRIVDG 181 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS-----DIEWIARILW 220 L G + K G I L S N +P + +IE I R+ W Sbjct: 182 DLYAINHGGLLRVKQTYRLPGGGIRLRSFNRDEHPDEEYSKDEIVAQEIEIIGRVFW 238 >gi|295101168|emb|CBK98713.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 210 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 69/211 (32%), Gaps = 17/211 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ ++ + LA K G+ + K + P ++ +I + T L Sbjct: 7 LKQCRKQKGISQAELASKLGVTQQAVGKWESGKS-----SPDPATVARIAEILSTTADFL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L L T +E+ G + + E Sbjct: 62 LGLYRPVSNVTTPEERFFGNYAESLIPVIGT-------VKAGYGALAFEEDYGQEYARVK 114 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191 + + SM P + GD+ +++ + GD +L+ G+ K I +RG Sbjct: 115 DPSNYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLVYGDEGEGTLKRYI-QRGN 173 Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + L N Y ++ D + R++ Sbjct: 174 CVVLQPFNPAYNELVIKGEDLNRLHIAGRVV 204 >gi|91794616|ref|YP_564267.1| transciptional regulator [Shewanella denitrificans OS217] gi|91716618|gb|ABE56544.1| transciptional regulator [Shewanella denitrificans OS217] Length = 229 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 69/228 (30%), Gaps = 21/228 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + + LT +A+ GL + + + P E++ + A Sbjct: 4 ERIKQRRKELGLTQPSIAKTIGLTKATISLWESGST-----SPKGENLHALAKALRCAPE 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNKWNTVG----- 119 LL S + + S F+ G+ Sbjct: 59 FLLFGNDSIKPEPNAEWAGGFETWGSNSPLGDDEVEIPFYMEVELAAGDGIIDCREYQGP 118 Query: 120 -VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + +S K SM P+ G + +++A ++ G Sbjct: 119 KLRFAKSTLKRQGVTSDHAACVKVNGNSMEPVLPNGSTVGVDTAHTDIVDGKMYAINHDG 178 Query: 179 DIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD---IEWIARILWAS 222 + K+L G + L S N YP + ++ + ++ I ++ W S Sbjct: 179 MLRVKMLYKLPGGGLRLRSYNLDEYPDERLDAEELKQVKVIGKVFWYS 226 >gi|9635582|ref|NP_061565.1| cI repressor protein [Pseudomonas phage D3] gi|2493333|sp|Q37906|RPC1_BPD3 RecName: Full=Repressor protein CI gi|1085700|pir||A55847 cI repressor homolog - Pseudomonas aeruginosa phage D3 gi|403436|gb|AAA53553.1| cI repressor protein [Pseudomonas phage D3] Length = 223 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 11/220 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + LT + LA++ GLD TS + ++ +G + + + Sbjct: 2 ELKDRIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQGTS---YIAQLASACGVSAL 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + S+ E P + G G F + T G+ R Sbjct: 59 WLAAGHGEMNSNKEALPGAPSEKDYALIPQYTARGECGDGYF-NDHVETTEGLVFKRDWL 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLI 186 + + SM P +GD+++ +++ +I+ G + K L Sbjct: 118 KRVNSKPENLFVIYADGDSMEPYIFEGDVVLFDTSKTDPQDKQVYVIRRPDGGVSIKRLN 177 Query: 187 SRRGRSIDLMSLNCC---YPVDTVEMSDIE---WIARILW 220 + + + S N YP + S + I R++W Sbjct: 178 QQLTGAWLIRSDNPDKSAYPDEMASESSVHELPIIGRVIW 217 >gi|331017574|gb|EGH97630.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 228 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 9/216 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I ++ + L+ LA G + ++ R PS + I KI Sbjct: 2 NTLGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGT-----RQPSLQDIRKIADTL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVFPTGNKWNTVGVPEI 123 + L+ + + K K+ + + ++ + P Sbjct: 57 GVSFVDLVAFTDDNAQPLVVKLKDSAPRLTGKAKEGRVPVVGTAQLGNEGYFDALDFPPG 116 Query: 124 R-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + I++ K SMLP + G+ +++ GD ++++ G + Sbjct: 117 HGDGYLNIHSDDPDAYGLKVTGDSMLPRIKNGEFVLIEPNKSYVSGDEVMVRTAAGRTMI 176 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K I R S+N +P + ++I I + Sbjct: 177 KEYIYLRDGMYRFDSVNAEHPPIHIAENEILEIHLV 212 >gi|289522427|ref|ZP_06439281.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504263|gb|EFD25427.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 216 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 18/219 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + ++ +T + LAR+ P+ ++ +R + PS + KI + Sbjct: 2 LGERIRTLRKKMRMTATELARRVKTSPSHISEIERGE-----KTPSLNLLVKIAKELQTS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I L L + E + + +GV+P + VPE Sbjct: 57 IDYLTGLEGFSKKALNVTEVALLDQASVTAAGKALDQTGVYPV--VEEMIYVPEDALGPV 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 G + SM+ I+++N +V GD + + + K + + Sbjct: 115 GDIPP----FAVRISGESMIGAGITDNSIVVINPNAEVGQGD-VALVSIGNEWTVKYIYT 169 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARILWA 221 + S++L N Y + D ++ I +++W Sbjct: 170 KADGSLELRPANPSYSPIFFDKEDLISGLVKVIGKVVWI 208 >gi|213968238|ref|ZP_03396382.1| phage repressor [Pseudomonas syringae pv. tomato T1] gi|301381283|ref|ZP_07229701.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13] gi|302062899|ref|ZP_07254440.1| putative phage repressor [Pseudomonas syringae pv. tomato K40] gi|213926876|gb|EEB60427.1| phage repressor [Pseudomonas syringae pv. tomato T1] Length = 228 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 9/216 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I ++ + L+ LA G + ++ R PS + I KI Sbjct: 2 NTLGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGT-----RQPSLQDIRKISDTL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVFPTGNKWNTVGVPEI 123 + L+ + + K K+ + + ++ + P Sbjct: 57 GVSFVDLVAFTDDNAQPLVVKLKDSAPRLTGKAKEGRVPVVGTAQLGNEGYFDALDFPPG 116 Query: 124 R-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + I++ K SMLP + G+ +++ GD ++++ G + Sbjct: 117 HGDGYLNIHSDDPDAYGLKVTGDSMLPRIKNGEFVLIEPNKSYVSGDEVMVRTAAGRTMI 176 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K I R S+N +P + ++I I + Sbjct: 177 KEYIYLRDGMYRFDSVNAEHPPIHIAENEILEIHLV 212 >gi|313885531|ref|ZP_07819281.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619261|gb|EFR30700.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] Length = 213 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 72/213 (33%), Gaps = 16/213 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + +T +A G T S + + P+ +I KI + Sbjct: 8 GKNLKYLRNKKGITQQEIADLIGRKSTGSVSDWEAGRTT-----PNAGNISKIASYFGLK 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I +++ + I P + + N +++ P P Sbjct: 63 IDAMVEYDLQTQASAPSNLIPIKQTKLIPVIGRIACGAPILADQNIIDSIAFPVELLPS- 121 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187 + + + SM+P + ++++ V G+ +++ + K + Sbjct: 122 ------GEIFFLECRGDSMMPTIQDKALVMVRKQENVEDGEIAVVLLNGDEEATLKRIKR 175 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + G I L+ N +P ++ +D I + + + Sbjct: 176 Q-GDLIMLLPDNTNHPPIVIQPTDTIRIVGKAI 207 >gi|148912804|ref|YP_001293383.1| Repressor protein [Pseudomonas phage F10] Length = 224 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 17/223 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ ++I + LT + LA++ GLD TS + ++ +G T I ++ AA Sbjct: 2 ELKDSIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQG------TAYIAQLAAACGV 55 Query: 68 TICQLLDLPFSDGRTTEKKEK---EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + L S E + E P + G G F + T G+ R Sbjct: 56 SALWLAAGHGSMNNNEEVPPRAPSEKDYALIPQYTARGECGDGYF-NDHVETTEGLVFKR 114 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAK 183 + + + SM P +GD+++ + A + +I+ G I K Sbjct: 115 DWLKRVNSKPENLFVIYAEGDSMEPYIFEGDVVLFDVAKIEPQDKQVYVIRRPDGGISIK 174 Query: 184 VLISRRGRSIDLMSLNCC---YPVDTVEMSDIE---WIARILW 220 L + + + S N YP + + + I R++W Sbjct: 175 RLNQQLSGAWLIRSDNPDKTAYPDEIASETSVHDLPIIGRVIW 217 >gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 196 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 26/211 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R+ E L+ LARKAGL + + PS +S+ K+ A Sbjct: 4 VGETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRT-----SPSLKSLEKLAGALQVA 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 QLL + + P V + + +P + Sbjct: 59 PGQLLQGQD----------RFSSQVVEVPVLGRVPAGGPVVSEEVILDYLPLPRKLAS-- 106 Query: 129 GIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM GD +++ G ++ + G++ K Sbjct: 107 ------EDTFCLEVRGESMQDLGIDSGDYVLVRLQPTAENGQVVIAR-VEGEVTCKRYYR 159 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R + L N + +E +IE + + Sbjct: 160 -TDRVVSLEPANRRFRPLRLEAGEIEIVGVV 189 >gi|218133316|ref|ZP_03462120.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC 43243] gi|217992189|gb|EEC58193.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC 43243] Length = 217 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 21/218 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ I ++ LA G D +S K ++ ++ S I + A Sbjct: 9 NLYKNIRERRIELKMSQDTLAELTGYRDRSSIAKIEKGEVD-----ISESKIREFAKALK 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + +L+ + +T + ++ + T + +T +PE Sbjct: 64 VSPGELMGWDEHNSQTEHTPQGHKGVV--INVLGRVAAGIPIEATTDIIDTEEIPEEM-- 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 A K + SM P GD++I+ + GD ++ D K L Sbjct: 120 -----AKTGDFFALKIKGNSMEPRIMDGDVVIVRKQDEAENGDVIIAMVNGDDATCKRLR 174 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219 + I+L+S N Y D + I +++ Sbjct: 175 KYKDG-IELISNNPSYKPMFFSDMDVQTKPVRIIGKVV 211 >gi|257440049|ref|ZP_05615804.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] gi|257197401|gb|EEU95685.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] Length = 209 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 68/211 (32%), Gaps = 18/211 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ +++ + LA G+ + K + P ++ K+ +T Sbjct: 7 LRQCRKQKHMSQAELASLLGVTQQAVGKWESGKS-----SPDPTTVAKLAEIL-DTTADY 60 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L F + +E+ + G + + E Sbjct: 61 LLGLFDPTAEGQTEERFFGSYVYSLIPVIGT-------VKAGYGALAYEEDYGKEYARVK 113 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191 + + SM P GD+ +++ + GD +LI G+ K + +RG Sbjct: 114 DPSSYFYLVVRGDSMEPRIHDGDLALVHRQDTLENGDLGVLIYGDEGEGTLKRYL-QRGN 172 Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + L N Y ++ + + R++ Sbjct: 173 CVVLQPFNPAYKEMVIKGEELNHLHIAGRVV 203 >gi|167769359|ref|ZP_02441412.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] gi|167668327|gb|EDS12457.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] Length = 205 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 59/212 (27%), Gaps = 25/212 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + ++ LA++ G+ + K + P ++ I + Sbjct: 10 ERLKALRKECGISQRALAQRLGVSQQAVAKWEAASST-----PGPNALATIADVLGVSSD 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 LL + + L + E Sbjct: 65 YLLGRERDFQDGAQDTARLPVLGT----------------VKAGYGAYAFEEDYGTAPAQ 108 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + SM P GD+ +++ V G+ ++ + K +I + Sbjct: 109 VRDPRDYFYLIVRGDSMEPRIHSGDLALVHRQPDVESGELAVVLVAGEEGTLKRVIKKE- 167 Query: 191 RSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 ++ L N Y E+ + I +++ Sbjct: 168 GAVILQPFNQAYQPQVFIGEELEQLVIIGKVV 199 >gi|254494052|ref|ZP_05107223.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|226513092|gb|EEH62437.1| transcriptional regulator [Neisseria gonorrhoeae 1291] Length = 243 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 68/234 (29%), Gaps = 28/234 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------- 63 + + + NL+ LA+ A + ++ + + + + KIL Sbjct: 13 DRLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNKKAT---NIAKLAKILDVSAFWLE 69 Query: 64 --------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + + + + + Y S G + Sbjct: 70 TGEGSRNTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEI 129 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 P N + +P +S SM + + +++ Sbjct: 130 PDYNGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDG 186 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 ++ + G K LI + G S+ + S N YP +T + + I R+ W S Sbjct: 187 KIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETASLDSLTVIGRVFWWS 240 >gi|331674164|ref|ZP_08374924.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli TA280] gi|331068258|gb|EGI39653.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli TA280] Length = 229 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 15/226 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + I ++ + + + LARK G+ S +P + + Sbjct: 1 MKNLKSTE--NRITKLLQEKGWSQAELARKLGVSAQSVQYWTTGKT-----FPRGNRLAQ 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN--- 116 + + L S ++++K + F G G+ + Sbjct: 54 LSEISGYPQSWFLGEITSRQFSSKEKHQTRTDSVVFNVLDVEFSCGDGTHVRGDFIDVVR 113 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 ++ + + + SM P GD+L L+ + GD + Sbjct: 114 SIELDPEYARRLVGNRAFQNIEIGNARGDSMAPTIAPGDLLFLDKTVNYFDGDGIYAFCF 173 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 G+ K L G I ++S N Y ++E +E ++++ Sbjct: 174 DGECYVKRLQKI-GSKIMVLSDNPNYQSWSIEKDALELLYIQSKVI 218 >gi|221213964|ref|ZP_03586937.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein) [Burkholderia multivorans CGD1] gi|221166141|gb|EED98614.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein) [Burkholderia multivorans CGD1] Length = 257 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 21/236 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S + + + L+ LAR+ G+ + + +G ++ + L Sbjct: 17 SMETLGSRVKAARLDAKLSQEALARQVGVSQGLIGQIESGKNQGSKH---LAALARALGV 73 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--------GGFFDSGVFPTGNKWN 116 + + + + E + +L + F G Sbjct: 74 SADWLETGKGPRERAVGQHKIPEDQGNVLVWEHPDDLPPDENRVWLDRYDYRFSAGTGLI 133 Query: 117 TVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 +P + + + SM P D++++++A + Sbjct: 134 QWEVRQKKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTAKTHIRDGK 193 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEM---SDIEWIARILWAS 222 + G+ + K + + G SI L S+N YP V + + +++ S Sbjct: 194 VYAIYFEGEPLVKQIFKQAGGSICLHSINSGKYPDKIVTPELMESVTIMGEVIYRS 249 >gi|312967403|ref|ZP_07781618.1| helix-turn-helix family protein [Escherichia coli 2362-75] gi|312287600|gb|EFR15505.1| helix-turn-helix family protein [Escherichia coli 2362-75] Length = 255 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 15/226 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + I ++ + + + LARK G+ S +P + + Sbjct: 27 MKNLKSTE--NRITKLLQEKGWSQAELARKLGVSAQSVQYWTTGKT-----FPRGNRLAQ 79 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN--- 116 + + L S ++++K + F G G+ + Sbjct: 80 LSEISGYPQSWFLGEITSRQFSSKEKHQARTDSVVFNVLDVEFSCGDGTHVRGDFIDVVR 139 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 ++ + + + SM P GD+L L+ + GD + Sbjct: 140 SIELDPEYARRLVGNRAFQNIEIGNARGDSMAPTIAPGDLLFLDKTVNYFDGDGIYAFCF 199 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 G+ K L G I ++S N Y ++E +E ++++ Sbjct: 200 DGECYVKRLQKI-GSKIMVLSDNPNYQSWSIEKDALELLYIQSKVI 244 >gi|126175811|ref|YP_001051960.1| putative phage repressor [Shewanella baltica OS155] gi|125999016|gb|ABN63091.1| putative phage repressor [Shewanella baltica OS155] Length = 233 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + NLT L++K G+ + ++ + P E+++K+ A Sbjct: 2 KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDT-----SPKGENLYKLAQALQ 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--------SGGFFDSGVFPTGNKW-NT 117 + L+ + + E + + F+ G Sbjct: 57 CSPDWLMFGDSKNTKKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYMDVELSAGEGIAEG 116 Query: 118 VG-----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 V + +S K SM P+ G + ++++ ++ Sbjct: 117 VEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMY 176 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222 G + K+L G + L S N +P + + I+ I ++ W S Sbjct: 177 AINHDGMMRVKMLYKLPGGGLRLRSYNTDEWPDEHINNEQLKNIKVIGKVFWYS 230 >gi|296114602|ref|ZP_06833255.1| hypothetical protein GXY_02456 [Gluconacetobacter hansenii ATCC 23769] gi|295978958|gb|EFG85683.1| hypothetical protein GXY_02456 [Gluconacetobacter hansenii ATCC 23769] Length = 221 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 10/181 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH+ IW A+D +A +TPSGLAR AGLD T+FN SKR GR RWP TES+ + L Sbjct: 1 MISHEDIWRALDLLATERGMTPSGLARAAGLDSTTFNPSKRMTSSGRPRWPGTESLARTL 60 Query: 63 AATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 +AT ++ + R + ++ F G FD P+G++W T Sbjct: 61 SATGISLEGFGRLMTGHGDRLGGTHHAHLMIVPFSELGQAELFDESGLPSGDRWETWDFH 120 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + H +M P++R G +L+++ + DR+L+ Sbjct: 121 GLADHH---------SYAVLVDSDNMEPIFRAGTVLVVSPTAAIRQHDRVLLHGPDSHAC 171 Query: 182 A 182 Sbjct: 172 C 172 >gi|162145992|ref|YP_001600450.1| hypothetical protein GDI_0160 [Gluconacetobacter diazotrophicus PAl 5] gi|209544371|ref|YP_002276600.1| hypothetical protein Gdia_2230 [Gluconacetobacter diazotrophicus PAl 5] gi|161784566|emb|CAP54103.1| conseved protein [Gluconacetobacter diazotrophicus PAl 5] gi|209532048|gb|ACI51985.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 217 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 93/234 (39%), Gaps = 34/234 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H +W+A+D +A LTPSGLAR AGLD TSFN SKR GR RWP TES+ ++L Sbjct: 1 MMRHDDLWQALDNLAAERGLTPSGLARAAGLDSTSFNPSKRVTPAGRPRWPGTESLARVL 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---GGFFDSGVFPTGNKWNTVG 119 AT T+ L + L GG FD+ P G W + Sbjct: 61 DATGLTLESFGRLMAGQALPRASRAAGRSRLRLSALSHLEQGGMFDAAGLPVGRHWESWD 120 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 VP + + + P++R G L+++SA + DR+++ Sbjct: 121 VPGLGD---------AELYAVMVDTDAFEPVFRAGAFLVVSSAAAIRRQDRVILHRADAT 171 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPV------------DTVEMSDIEWIARILWA 221 + A VL R G Y +E + + RI+ A Sbjct: 172 LCAVVLDPRPG----------AYDPGPLLGGIGARDGMEIETGPTDHLHRIMMA 215 >gi|238762739|ref|ZP_04623708.1| Phage-related repressor protein [Yersinia kristensenii ATCC 33638] gi|238699044|gb|EEP91792.1| Phage-related repressor protein [Yersinia kristensenii ATCC 33638] Length = 240 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 73/207 (35%), Gaps = 7/207 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + +H ++ S LA+ +G+ + + P E + KI N Sbjct: 21 DDFAARLNSLMSKHEISVSSLAKLSGVSYEMARRYTLGTAK-----PRDEKMLKIADHLN 75 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L + T + + +G + + FP +++ +PE + Sbjct: 76 VSPAFLDYGTMTGRDTEADSKVVKLRQLEVFASAGHGYINNEFPA--VISSIEIPEDKIY 133 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 SM+P D+L +++ I GD + + K L Sbjct: 134 ELFGRKSLDGIHLMNVDGDSMMPTLHPRDLLFIDTKIDHFNGDGVYVFNFEDSTFVKRLQ 193 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE 213 +GR + ++S N YP +E +++ Sbjct: 194 KVKGRRLSVLSDNDKYPPFFIEANEMN 220 >gi|152999279|ref|YP_001364960.1| putative phage repressor [Shewanella baltica OS185] gi|151363897|gb|ABS06897.1| putative phage repressor [Shewanella baltica OS185] Length = 240 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 21/232 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + + I + +T L G+ + + ++ P ++F + + Sbjct: 11 KTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDET-----APKGANLFALAKSLK 65 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKW-NTVG 119 + LL+ + + + L+ F+ G + Sbjct: 66 CDLSWLLNGQIATKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGIVEGIE 125 Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + +S K SM P+ G + ++++ ++ Sbjct: 126 YKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMYAI 185 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMS---DIEWIARILWAS 222 G + K+L G + L S N YP + ++ ++ I ++ W S Sbjct: 186 NHDGMMRVKMLYKLPGGGLRLRSYNLDEYPDERLDADQLKQVKVIGKVFWYS 237 >gi|239999287|ref|ZP_04719211.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae 35/02] Length = 236 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 68/234 (29%), Gaps = 28/234 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------- 63 + + + NL+ LA+ A + ++ + + + + KIL Sbjct: 6 DRLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNKKAT---NIAKLAKILDVSAFWLE 62 Query: 64 --------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + + + + + Y S G + Sbjct: 63 TGEGSRNTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEI 122 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 P N + +P +S SM + + +++ Sbjct: 123 PDYNGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDG 179 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 ++ + G K LI + G S+ + S N YP +T + + I R+ W S Sbjct: 180 KIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETASLDSLTVIGRVFWRS 233 >gi|160875134|ref|YP_001554450.1| putative phage repressor [Shewanella baltica OS195] gi|160860656|gb|ABX49190.1| putative phage repressor [Shewanella baltica OS195] gi|315267325|gb|ADT94178.1| putative phage repressor [Shewanella baltica OS678] Length = 233 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + NLT L++K G+ + ++ + P E+++K+ A Sbjct: 2 KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDT-----SPKGENLYKLAQALQ 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--------SGGFFDSGVFPTGNKW-NT 117 + L+ + + E + + F+ G Sbjct: 57 CSPDWLMFGDSKNTKKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGIVEG 116 Query: 118 VG-----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 V + +S K SM P+ G + ++++ ++ Sbjct: 117 VEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMY 176 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222 G + K+L G + L S N +P + + I+ I ++ W S Sbjct: 177 AINHDGMMRVKMLYKLPGGGLRLRSYNTDEWPDEHINNEQLKNIKVIGKVFWYS 230 >gi|217971957|ref|YP_002356708.1| putative phage repressor [Shewanella baltica OS223] gi|217497092|gb|ACK45285.1| putative phage repressor [Shewanella baltica OS223] Length = 233 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + NLT L++K G+ + ++ + P E+++K+ A Sbjct: 2 KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDT-----SPKGENLYKLAQALQ 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--------SGGFFDSGVFPTGNKW-NT 117 + L+ + + E + + F+ G Sbjct: 57 CSPDWLMFGDSKNTKKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGITEG 116 Query: 118 VG-----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 V + +S K SM P+ G + ++++ ++ Sbjct: 117 VEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMY 176 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222 G + K+L G + L S N +P + + I+ I ++ W S Sbjct: 177 AINHDGMMRVKMLYKLPGGGLRLRSYNTDEWPDEHINNEQLKNIKVIGKVFWYS 230 >gi|255282221|ref|ZP_05346776.1| LexA repressor [Bryantella formatexigens DSM 14469] gi|255267169|gb|EET60374.1| LexA repressor [Bryantella formatexigens DSM 14469] Length = 206 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 68/218 (31%), Gaps = 26/218 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I I E +T LA K G + +S K + + + + A N Sbjct: 3 EIGIRIREQREAIGMTQEELASKLGYKNKSSIAKIETGAND-----IVQSKVIEFADALN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T+ L+ + + + +T +PE Sbjct: 58 TTVSYLMGW-------EKTNVNSRKKGVTINVLGRVAAGIPIEAITDIIDTEEIPEEM-- 108 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 A + + SM P + +GD++I+ GD ++ D K L Sbjct: 109 -----AATGEFFGLQIHGDSMEPKFSEGDVVIVRQQDDAESGDIVIAMINGDDATCKRLR 163 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219 R I+L+S N Y DIE I +++ Sbjct: 164 KYRDG-IELVSTNPSYEPMFFSNEDIEQKPVKIIGKVV 200 >gi|218665577|ref|YP_002425471.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517790|gb|ACK78376.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 243 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 20/232 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H++I AI ++ T + LA K G+ S ++ I R PS E++F++ Sbjct: 1 MELHERIKFAI----KQSGFTQNALAEKLGISRGSISQWVSGNIATRT-VPSRENLFRLA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG----FFDSGVFPTGNKW--- 115 + I L S +K E + + + G + G Sbjct: 56 ELSGVPIEWLWSGRESAAHKPQKPEGSLSVSEYQDEEGLGDGEVEIPALNLQVGAGSRIV 115 Query: 116 -----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 RS R + SM P + G + ++ + + Sbjct: 116 CETIQEERKFRYARSWLQKYGLDSKYLFRVRVYGDSMEPYIKNGAWITVDKSRTNIQNGK 175 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + + +I K L R I + S N YP V +D I I ++ Sbjct: 176 IYVLRSGEEIQVKALFKRPDSGIIIRSNNPAYPDVQVSATDMEHIAIIGEVI 227 >gi|317054052|ref|YP_004118077.1| putative phage repressor [Pantoea sp. At-9b] gi|316952047|gb|ADU71521.1| putative phage repressor [Pantoea sp. At-9b] Length = 230 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 10/208 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 +D + + NL+ + LAR AG+ P + N + G G+ +S KI AAT + Sbjct: 14 RLDELLKAANLSKADLARIAGVSPQAVNNWFKRGEIGK------DSAIKISAATGLDLSW 67 Query: 72 LLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 +L +K E+ ++ +G V + + I Sbjct: 68 VLGESDQMYSTPHQKPASEVEVVGNIMNGVIPVKGDAVLGMDGLIDMMEFHAGWL---RI 124 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 Y+ + + + SM P + G+ +++ +V+ GD + I+ G + K+L R Sbjct: 125 YSDDREAYGVRVRGDSMWPRIQSGEFVVIEPNTKVHPGDEVFIRTSDGHNMIKILNYNRA 184 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 S+N + T+ ++ ++ I + Sbjct: 185 GDYQFTSINNDHKPFTLPVNQVDKIHFV 212 >gi|114562824|ref|YP_750337.1| putative phage repressor [Shewanella frigidimarina NCIMB 400] gi|114334117|gb|ABI71499.1| putative phage repressor [Shewanella frigidimarina NCIMB 400] Length = 230 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 22/232 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + + I + LT LA +A + +K + ++ + I Sbjct: 2 KTLAQNIQEKLKASGLTQKELAERANISQVMVHKLISGKAKESSK------LVAIAGVLG 55 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP------PSGSGGFFDSGVFPTGNKWNTVG- 119 T +L+ T+ + + F+ G+ Sbjct: 56 CTAEELMYGLEKHVPTSNAEWAGPMETWDSNTPLNDDEVEIPFYMEVELAAGHGIAEASE 115 Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + +S T + SM P+ G + ++++ ++ Sbjct: 116 YHGPKLRFAKSTLRKSSVDPTNAACVRVSGNSMEPVLPSGSTVGVDTSQTDVIDGKMYAI 175 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMS---DIEWIARILWAS 222 G + K L G + L S N +P + E I+ I ++ W S Sbjct: 176 NHDGMLRVKTLYKLPGGGLRLRSYNIDEWPDERYEGEAIKQIKIIGKVFWYS 227 >gi|260844262|ref|YP_003222040.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009] gi|257759409|dbj|BAI30906.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009] Length = 229 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 10/204 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I M + T + LARK G+ S +P ++ + + + Sbjct: 9 NRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKT-----FPRSDKLAHLSEISGYPQS 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN---TVGVPEIRSP 126 L S ++++K + F G G+ + ++ + + Sbjct: 64 WFLGEDSSPTFSSQEKHQTRTDSVVFNVLDVEFSCGDGTHVRGDLIDVVRSIELDPEYAR 123 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + SM P GD+L L+ + GD + G+ K L Sbjct: 124 RLVGNRAFKNIEIGNARGDSMAPTISPGDLLFLDKTVTYFDGDGIYAFCFDGECYVKRLQ 183 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS 210 G I ++S N Y ++E Sbjct: 184 KI-GSKIMVLSDNPNYQPWSIEKE 206 >gi|188492663|ref|ZP_02999933.1| regulatory protein [Escherichia coli 53638] gi|188487862|gb|EDU62965.1| regulatory protein [Escherichia coli 53638] gi|315615351|gb|EFU95983.1| helix-turn-helix family protein [Escherichia coli 3431] Length = 229 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 10/204 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I M + T + LARK G+ S +P ++ + + + Sbjct: 9 NRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKT-----FPRSDKLAHLSEISGYPQS 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN---TVGVPEIRSP 126 L S ++++K + F G G+ + ++ + + Sbjct: 64 WFLGEDSSPTFSSQEKHQTRTDSVVFNVLDVEFSCGDGTHVRGDLIDVVRSIELDPEYAR 123 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + SM P GD+L L+ + GD + G+ K L Sbjct: 124 RLVGNRAFKNIEIGNARGDSMAPTISPGDLLFLDKTVTYFDGDGIYAFCFDGECYVKRLQ 183 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS 210 G I ++S N Y ++E Sbjct: 184 KI-GSKIMVLSDNPNYQPWSIEKE 206 >gi|59800917|ref|YP_207629.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|254493392|ref|ZP_05106563.1| predicted protein [Neisseria gonorrhoeae 1291] gi|268594521|ref|ZP_06128688.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268598656|ref|ZP_06132823.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601679|ref|ZP_06135846.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603328|ref|ZP_06137495.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268681808|ref|ZP_06148670.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684029|ref|ZP_06150891.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291044180|ref|ZP_06569892.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398777|ref|ZP_06642945.1| lambda repressor protein cI [Neisseria gonorrhoeae F62] gi|59717812|gb|AAW89217.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|226512432|gb|EEH61777.1| predicted protein [Neisseria gonorrhoeae 1291] gi|268547910|gb|EEZ43328.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268582787|gb|EEZ47463.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585810|gb|EEZ50486.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587459|gb|EEZ52135.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622092|gb|EEZ54492.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624313|gb|EEZ56713.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291011897|gb|EFE03890.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610779|gb|EFF39886.1| lambda repressor protein cI [Neisseria gonorrhoeae F62] Length = 238 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 11/220 (5%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 FS +++ +AI +R N++ +A G+ S + + G + + K+ Sbjct: 18 KMFSGEQLGQAISEAIKRKNVSQKEVADHFGVKQPSVSGWIKNGRIDKKH------LDKL 71 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + ++ + + ++ I + G + V V Sbjct: 72 IDYFSDVVTPSHFGIETFRVLKSNEQSSIRFPRLNAEATCGAGTINDHYIE-VVDYVTVA 130 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + SM P GD++ +++A++ GD L + + Sbjct: 131 AAWAREKLGGNLNK-IQVITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLK 189 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218 AK L S G + ++S N Y +TV D + I RI Sbjct: 190 AKRLQSTVGGGLMIISDNSSYRTETVRGEDLNAVRIIGRI 229 >gi|85058915|ref|YP_454617.1| hypothetical protein SG0937 [Sodalis glossinidius str. 'morsitans'] gi|84779435|dbj|BAE74212.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans'] Length = 236 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 28/238 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E + + + L A K + P + + + S ES K+ Sbjct: 2 NNITERLKHVMAQEGLNQRAFAEKLNVSPQTLHNWLKRNA------ISRESAQKLSTLFG 55 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGN 113 ++ LL+ + + + P + GS F+ G Sbjct: 56 YSLDWLLNGKGATKAASNNNSEVPPEDEWGRIGSWDRKTPLNNDEVEIPFYKDIELAAGG 115 Query: 114 K-WNTVG-------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + V + G + T SM P G + ++ + Sbjct: 116 GCFENVDYNSFLLRFSKSTLRRVGADSSGHGVICFTTHGNSMEPFIPDGTCVAIDCNNKH 175 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 + G K L R I + S N YP + + +++ I R+ W S Sbjct: 176 VHDGDVYAININGLKRIKQLYMRPKGKIVVRSFNRLEYPDEEFDEQEVDIIGRLFWTS 233 >gi|261381037|ref|ZP_05985610.1| transcriptional regulator, Cro/CI family [Neisseria subflava NJ9703] gi|284796072|gb|EFC51419.1| transcriptional regulator, Cro/CI family [Neisseria subflava NJ9703] Length = 228 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 73/226 (32%), Gaps = 14/226 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + L+ +GL++ G+ S + + R + SI K L + Sbjct: 3 EIKDRLREARRNKGLSQAGLSKLLGVSQASIAAIEAGRNK---RPTNLVSIAKALDVSPY 59 Query: 68 T---ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVG---- 119 + ++ + + +E + + GN + + + Sbjct: 60 WLETGKEDKEIISNATPLGKIEEWDNDTPLSEDDCEAPLYKDVKLSAGNGFADDIEDYNG 119 Query: 120 --VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + R+ SM P++ G L +++ + ++ Sbjct: 120 YKLRFSRNTLRKHGISPENVVCVMADGDSMEPVFPSGATLGIDTGSKNIRDGQIYAINHG 179 Query: 178 GDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222 G + K+L + + S N YP + + D+ I R+ W S Sbjct: 180 GLLRTKILHKLPENKVRIRSYNQSEYPDEEASLDDLSVIGRVFWWS 225 >gi|315266122|gb|ADT92975.1| putative phage repressor [Shewanella baltica OS678] Length = 240 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 21/232 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + + I + +T L G+ + + ++ P ++F + + Sbjct: 11 KTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDET-----APKGANLFALAKSLK 65 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKW-NTVG 119 + LL+ + + + L+ F+ G V Sbjct: 66 CDLSWLLNGQVAVKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGITEGVE 125 Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + +S K SM P+ G + ++++ ++ Sbjct: 126 YKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMYAI 185 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD---IEWIARILWAS 222 G + K+L G + L S N YP + ++ I+ I ++ W S Sbjct: 186 NHDGMMRVKMLYKLPGGGLRLRSYNLDEYPDEHLDTEKLKHIKIIGKVFWYS 237 >gi|304409163|ref|ZP_07390784.1| putative phage repressor [Shewanella baltica OS183] gi|307303166|ref|ZP_07582921.1| putative phage repressor [Shewanella baltica BA175] gi|304352984|gb|EFM17381.1| putative phage repressor [Shewanella baltica OS183] gi|306913526|gb|EFN43948.1| putative phage repressor [Shewanella baltica BA175] Length = 233 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + NLT L++K G+ + ++ + P E+++K+ A Sbjct: 2 KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDT-----SPKGENLYKLAQALQ 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--------SGGFFDSGVFPTGNKW-NT 117 + L+ + + E + + F+ G Sbjct: 57 CSPDWLMFGDSKNTKKPESNAEWAGGFDLWDNDSPLGDDEVEIPFYVDIELSAGEGIVEG 116 Query: 118 VG-----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 V + +S K SM P+ G + ++++ ++ Sbjct: 117 VEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMY 176 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222 G + K+L G + L S N +P + + I+ I ++ W S Sbjct: 177 AINHDGIMRVKMLYKLPGGGLRLRSYNTDEWPDEHINNEQLKNIKVIGKVFWYS 230 >gi|194098221|ref|YP_002001276.1| Putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|193933511|gb|ACF29335.1| Putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|317163946|gb|ADV07487.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 220 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 11/219 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FS +++ +AI +R N++ +A G+ S + + G + + K++ Sbjct: 1 MFSGEQLGQAISEAIKRKNVSQKEVADHFGVKQPSVSGWIKNGRIDKKH------LDKLI 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 ++ + + ++ I + G + V V Sbjct: 55 DYFSDVVTPSHFGIETFRVLKSNEQSSIRFPRLNAEATCGAGTINDHYIE-VVDYVTVAA 113 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM P GD++ +++A++ GD L + + A Sbjct: 114 AWAREKLGGNLNK-IQVITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLKA 172 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218 K L S G + ++S N Y +TV D + I RI Sbjct: 173 KRLQSTVGGGLMIISDNSSYRTETVRGEDLNAVRIIGRI 211 >gi|152985545|ref|YP_001349953.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960703|gb|ABR82728.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 237 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 30/239 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + NL+ LA+ G+ TS + +R T + +I A Sbjct: 2 ELKDRIKAARKHANLSQVQLAQAVGMTQTSISDLERGKSRA------TSFVAQIAGACGV 55 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNK 114 L + + + S F+ G Sbjct: 56 NPLWLAEGRGEMLAERGQANAGPNASWLGAVESWDDETPLDADEIELPFYKEIELSGGKG 115 Query: 115 WNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + R G Y + SM P+ G + ++++ + Sbjct: 116 STVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIRD 175 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222 + G + K+L G + + S N +P + E + I I R+ W S Sbjct: 176 GDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEAAEHINVIGRVFWYS 234 >gi|49081996|gb|AAT50398.1| PA0906 [synthetic construct] Length = 238 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 30/239 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + +L+ LA+ G+ TS + +R T + +I A Sbjct: 2 ELKDRIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSRA------TSFVAQIAGACGV 55 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNK 114 L + + + S F+ G Sbjct: 56 NPLWLAEGRGEMLAERGQANAGPNASWLGAVESWDDETPLDADEIELPFYKEIELSGGKG 115 Query: 115 WNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + R G Y + SM P+ G + ++++ + Sbjct: 116 STVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKD 175 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222 + G + K+L G + + S N +P + E + I I R+ W S Sbjct: 176 GDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEAAEHINVIGRVFWYS 234 >gi|15596103|ref|NP_249597.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100364|ref|ZP_01364282.1| hypothetical protein PaerPA_01001389 [Pseudomonas aeruginosa PACS2] gi|116048830|ref|YP_792370.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218893125|ref|YP_002441994.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254239258|ref|ZP_04932581.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719] gi|296390740|ref|ZP_06880215.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313105790|ref|ZP_07792053.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9946808|gb|AAG04295.1|AE004525_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115584051|gb|ABJ10066.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126171189|gb|EAZ56700.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719] gi|218773353|emb|CAW29165.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310878555|gb|EFQ37149.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 237 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 30/239 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + +L+ LA+ G+ TS + +R T + +I A Sbjct: 2 ELKDRIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSRA------TSFVAQIAGACGV 55 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNK 114 L + + + S F+ G Sbjct: 56 NPLWLAEGRGEMLAERGQANAGPNASWLGAVESWDDETPLDADEIELPFYKEIELSGGKG 115 Query: 115 WNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + R G Y + SM P+ G + ++++ + Sbjct: 116 STVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKD 175 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222 + G + K+L G + + S N +P + E + I I R+ W S Sbjct: 176 GDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEAAEHINVIGRVFWYS 234 >gi|149186070|ref|ZP_01864384.1| putative transcriptional regulator, repressor [Erythrobacter sp. SD-21] gi|148830101|gb|EDL48538.1| putative transcriptional regulator, repressor [Erythrobacter sp. SD-21] Length = 212 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 13/220 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ + + E+ + + L+ G +P+ + R +G R + Sbjct: 1 MADMSPER--ARLVELTEKSRTSLASLSSILGRNPSYLQQFVR---KGSPRKLEEADRRR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + +L P + +P L S G F + +++ Sbjct: 56 LAEFFGVDEVELGADPARPTPRESEDFVAVPRLALDASAGPGSFSAEEIS----FDSFRF 111 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 G+ + + + SM P R GD + ++ G+ + + + Sbjct: 112 SRRWLREMGL--DGADLSAIRVEGDSMEPTLRSGDEIFVDRNK--RVGEGVHVVRIGDTL 167 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 K + + I L+S N Y + ++E I R++W Sbjct: 168 HVKQVQASAPGRIALISANEAYAPIELARDEVEIIGRVVW 207 >gi|85709159|ref|ZP_01040225.1| transcriptional regulator [Erythrobacter sp. NAP1] gi|85690693|gb|EAQ30696.1| transcriptional regulator [Erythrobacter sp. NAP1] Length = 227 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 71/214 (33%), Gaps = 5/214 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +A+ + + L+ G + + + + G + + + + + + Sbjct: 14 QRLLDLAQERGASLASLSVLIGRNASYLQQFIKKGSPRKLEEGDRKVLAQFFGISEIELG 73 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFP-TGNKWNTVGVPEIRSPHN 128 + TT + + G G P ++T Sbjct: 74 GTESVAQEISYTTGSGSADSTQWVVVQRLAIGASAGPGALPTEEAAFDTFRFSRRWLAEQ 133 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 G+ + + + SM PL GD ++++ + D + + ++ K + Sbjct: 134 GL--SNAKLSAITVEGDSMEPLLNDGDEILIDRTERAFR-DGVHVVRLGETLMVKRVARA 190 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 L+S N YP V ++E I R++W S Sbjct: 191 GAGRFALLSQNLAYPPVEVAADELEIIGRVVWKS 224 >gi|327197613|ref|YP_004301304.1| gp28 [Brochothrix phage NF5] gi|296245436|gb|ADH03050.1| gp28 [Brochothrix phage NF5] Length = 232 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 22/236 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +K I I + + +N+T LA K G+ P++ + PS I K Sbjct: 1 MDTNRNKIISSNIKKYIKENNITQKELANKVGISPSTMSDYMNLRSN-----PSHGVIQK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---- 116 I + + + + Sbjct: 56 IADYFGILKSDIDTTYKEPNGISNIYSQLNEERQTKVYNYASRQLEEQNSNVTSIDKKKV 115 Query: 117 -----TVGVPEIRSPHNGIY-------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 T P S + +Y + D Q SM PL G I+ + Sbjct: 116 YVLGKTAANPTEVSYGDAVYDETIDTNVPRNADCALVIQGDSMEPLLHDGSIVFYKQQCE 175 Query: 165 VNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 V G+ ++ + K + + L SLN Y + + I +++ Sbjct: 176 VENGEIAILDIDGNGVTCKKVYFNYDDNIVILKSLNSKYDDRELSPERVRVIGKVV 231 >gi|282599559|ref|ZP_05970999.2| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] gi|282568492|gb|EFB74027.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] Length = 233 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 67/226 (29%), Gaps = 15/226 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + ++ + LA K G+ S K + R I K + + + Sbjct: 8 IAKRLLDARIKAGMSQADLAEKVGVSQQSIQKIEAGQTNSPRR---ISDIAKAVNVSAQW 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-------NTVGVP 121 + E KE E G P Sbjct: 65 LQFGTRDGNGLKTEFEVKEWEDIPNCSDVDFVDIPVLDIELAAGGGSNAEIIESEEYTYP 124 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 R + K S+ P+ GD++ ++ + + L + Sbjct: 125 FRRDELRKYGVSASNARIVKIIGNSLYPVLNSGDLVAVDVSKRDIKDGDLYAIRDGVLLR 184 Query: 182 AKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222 K+L+ R I + S N YP + + ++ + I R+ W+S Sbjct: 185 VKILVYRPDGGIIIRSFNKDEYPDEQLPRNEAAARVHVIGRVFWSS 230 >gi|238923636|ref|YP_002937152.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale ATCC 33656] gi|238875311|gb|ACR75018.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale ATCC 33656] Length = 213 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 67/225 (29%), Gaps = 24/225 (10%) Query: 1 MTSFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M K I+ E ++ + T +A+ G+ P +FN + R +++ Sbjct: 1 MVKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAI--PRMGKVQALA 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + K++ + P G G V Sbjct: 59 DYFNINKSDLIED---------------KKLNIDTVPIESGYTIPVLGRVAAGYGKEAVE 103 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + A + + SM+P GD +I+ GD ++ D Sbjct: 104 EVIGQIEISPSMAAKGDYFGLLIKGDSMIPTLYDGDTVIVERTDDAESGDLVIALVNGSD 163 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219 K L I L+ N Y S+ ++ + +++ Sbjct: 164 ATCKRLQKY-AEGIALIPQNPVYEPMRFTESEIDTTPVKILGKVV 207 >gi|268595110|ref|ZP_06129277.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268548499|gb|EEZ43917.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] Length = 229 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 66/231 (28%), Gaps = 28/231 (12%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA---------- 63 + NL+ LA+ A + ++ + + + + KIL Sbjct: 2 KEARKNKNLSQENLAKLAEVSQSTIAALESGRNKKAT---NIAKLAKILDVSAFWLETGE 58 Query: 64 -----------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + + + + + Y S G + P Sbjct: 59 GSRNTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 118 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 N + +P +S SM + + +++ ++ Sbjct: 119 NGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 175 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 + G K LI + G S+ + S N YP +T + + I R+ W S Sbjct: 176 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETASLDSLTVIGRVFWRS 226 >gi|331685806|ref|ZP_08386387.1| transcriptional regulator, Cro/CI family [Escherichia coli H299] gi|324014328|gb|EGB83547.1| helix-turn-helix protein [Escherichia coli MS 60-1] gi|331077003|gb|EGI48220.1| transcriptional regulator, Cro/CI family [Escherichia coli H299] Length = 228 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 16/228 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + E+ ++ + LA K GL S K + + + R + I K+L + Sbjct: 2 KTLAERLKSEREKAGMSQAQLAEKIGLSQQSVAKIENGETQ-QPR--KIKEIAKVLGVSQ 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-----VP 121 + + ++ S K+ + L + G V P Sbjct: 59 KWLQLGIEDNASFPDLVVKEAESTALDPDIFANIPVLDVELSAGNGCLAEIVESTVDWFP 118 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179 R + K S+LP+ GD + ++ + + GD L Sbjct: 119 LRRIDLRKAGVCVSNAKIVKIWGNSLLPVLNNGDFVAVDVSQTVPIRDGD-LYAIRDGVL 177 Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222 + K+LI+ + L S N YP + + D I I R+ W+S Sbjct: 178 LRVKILINLPDGGLILRSFNKDEYPDEILTFEDRRSRIHVIGRVFWSS 225 >gi|330999680|ref|ZP_08323389.1| peptidase S24-like protein [Parasutterella excrementihominis YIT 11859] gi|329574186|gb|EGG55762.1| peptidase S24-like protein [Parasutterella excrementihominis YIT 11859] Length = 226 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 8/218 (3%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S K + ++ +P+ +++ G+ P K +G P + +F + + Sbjct: 6 SQKTWTDRLNEALALRGKSPADISKATGITPAGIKKWI----DGDVSKPKFDDVFAVCSF 61 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + T L+ S T + + GS G T+ V Sbjct: 62 LDITTEWLMKGIGSINDKTMPAANMVSIQQVDFYGSCGVGVMNFEDYPE-IKTLQVTPAW 120 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 N + SM P R GD + ++ + D + + G+ K Sbjct: 121 FSRNFAFYNPRDVKIITALGDSMEPEIRDGDAVFIDITDKETLRDGIYLLVVDGEAYIKR 180 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219 + G+ I L+S N Y + + ++ I R++ Sbjct: 181 VQKLIGKKIALLSTNKAYKDIEISLDSDIEVRIIGRVI 218 >gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176] gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176] Length = 209 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 65/213 (30%), Gaps = 17/213 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + + ++R G+ + K + P +++ ++ Sbjct: 4 DRLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRST-----PDPQTVARLAEIL----- 53 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + + + S V + + E Sbjct: 54 --DTTADVLLGLQKSPSEAPAVGRYAFSRYAECLIPVVGTVRAGYGALAFEEDYGKEYAS 111 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRR 189 + SM P GD+ +++ ++ GD +L+ G+ K I +R Sbjct: 112 VKDPQNYFYLVVKGDSMEPRISDGDLALVHRQNTLDNGDLGVLVYGADGEGTLKKYI-QR 170 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 G S+ L N Y ++ +++ +++ Sbjct: 171 GNSVVLHPFNPAYEELVIKGEELDHLYIAGKVV 203 >gi|296282441|ref|ZP_06860439.1| putative transcriptional regulator, repressor [Citromicrobium bathyomarinum JL354] Length = 231 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 5/214 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-I 69 + +A+ + + L++ + + + R G + ++ + + Sbjct: 18 ARLLELAQARGSSLAALSKLIDRNSSYLQQFIRKGSPRKLEEQDRRTLAQFFGVDESELV 77 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPHN 128 ++ + + P G F G ++ G N Sbjct: 78 PEMSGAEEKSYGASRFSAGDEDFHAIPRLSLAAAAGPGQFANGEAPFDNFGFSGRWLREN 137 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 G + + SM PL R GD ++++ + D + + ++ K L S Sbjct: 138 GF--DPKMLSALTVEGDSMEPLLRHGDEILIDRGSRFER-DGVHVVRMGDTLMVKRLASA 194 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 I L+S N YP V + +IE + R++W S Sbjct: 195 GAGRIALLSQNLAYPPVEVGLDEIEVLGRVVWKS 228 >gi|161525013|ref|YP_001580025.1| putative phage repressor [Burkholderia multivorans ATCC 17616] gi|160342442|gb|ABX15528.1| putative phage repressor [Burkholderia multivorans ATCC 17616] Length = 270 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 21/235 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-----------TES 57 + + + E +L+ + LA +AG+ T+ + +G S ES Sbjct: 28 LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGSKHLLSIARALGVNPAWLES 87 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 A+ Q + + + L + F G Sbjct: 88 ESGPKDASAAAAPQPGIYKIPEDQGNVLVWEHPDDLPPDENRVWLDRYDYRFSAGTGLIQ 147 Query: 118 VG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 +P + + + SM P D++++++A ++ Sbjct: 148 WEVRQKKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTAKNHIRDGKV 207 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEM---SDIEWIARILWAS 222 G+ + K + + G SI L S+N YP V + + +++ S Sbjct: 208 YAIYFEGEPLVKQIFKQAGGSICLHSINAGKYPDKIVTPELMESVTIMGEVIYRS 262 >gi|146308997|ref|YP_001189462.1| putative phage repressor [Pseudomonas mendocina ymp] gi|145577198|gb|ABP86730.1| putative phage repressor [Pseudomonas mendocina ymp] Length = 240 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 16/224 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + R+ + ++ LA + G ++S+ E R PS + I A Sbjct: 2 ETLGQRLKRLRKAKGMSQQALAEECGWA----SQSRIGNYEADLRAPSLSDLLLIAPALG 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-----------W 115 ++ +L G + + + + + + Sbjct: 58 VSLAELAGSDEWTGAYGVQVQVKNHQVRESVGAETIEAGTAKEGAVPVVGNAKLGTDGYF 117 Query: 116 NTVGVPEIR-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 V P + I++ K SM P + G+ +++ GD +++K Sbjct: 118 EAVDFPVGHGDGYLLIHSDDPNAYGLKVLGDSMHPRIKNGEYVLIEPNKVFTSGDEVMVK 177 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + G + K I R S+N + + I+ I + Sbjct: 178 TKDGQAMIKEFIYLRDGMYRFDSVNQSHQPIHLPEDAIDKIHLV 221 >gi|251772691|gb|EES53255.1| putative phage repressor [Leptospirillum ferrodiazotrophum] Length = 227 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 9/221 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA---T 65 + + + + L+ + L+ K+G+ + + + + I T Sbjct: 4 LGDRLKEARTKRKLSQTALSEKSGVPQQTIHAIENKKAKSTGHLFPLAKALHINPEWLST 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 E + L S P + + G + V Sbjct: 64 GEGEMERKPLEESFLGEPASPGYGAPFSIPVFAITAGMGRGRFLDSEQVLKIVVFDPATL 123 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + SMLP I+ ++ + D + + I K L Sbjct: 124 RDMNLSGSVHGIVAVYADGESMLPTIPPKSIVFVDRNQRDLR-DGVYLVRLEEMIYVKRL 182 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARI--LWA 221 + ++S N Y V++ D E + ++ +W Sbjct: 183 QRLPNHKVKVISDNPVYQPFEVDLKNGDDFEILGKVLRVWI 223 >gi|170080892|ref|YP_001730212.1| repressor protein CI [Escherichia coli str. K-12 substr. DH10B] gi|133351|sp|P14819|RPC1_BPPH8 RecName: Full=Repressor protein CI gi|14804|emb|CAA31471.1| unnamed protein product [Enterobacteria phage phi80] gi|169888727|gb|ACB02434.1| repressor protein CI [Escherichia coli str. K-12 substr. DH10B] Length = 236 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 25/233 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + R L LA P + N + S E+ +I + Sbjct: 4 ISERIKFLLAREGLKQRDLAEALSTSPQTVNNWIKRDA------LSREAAQQISEKFGYS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-----------GSGGFFDSGVFPTGNKWNT 117 + LL+ S + E + F F G+ Sbjct: 58 LDWLLNGEGSPKKDLESNIPPESEWGTVDAWDKNTPLPDDEVEVPFLKDIEFACGDGRVH 117 Query: 118 VG--------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + G + + SM P+ G + +++ + Sbjct: 118 DEDHNGFKLRFSKATLRRVGANSDGSGVLCFPASGDSMEPVIPDGATVAVDTGNKRVIDG 177 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 L + K L + G I + S+N Y + + +D+E I + W S Sbjct: 178 ELYAINQGDLKRIKQLYRKPGGKILIRSINRDYDDEEADEADVEIIGFVFWYS 230 >gi|224825138|ref|ZP_03698244.1| putative phage repressor [Lutiella nitroferrum 2002] gi|224602809|gb|EEG08986.1| putative phage repressor [Lutiella nitroferrum 2002] Length = 227 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 20/226 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ L+ K G+ S R PS +++ KI+A+ Sbjct: 3 VSARLGHVIAEKGMSIKALSEKTGIPYRSLQNYFSGE-----REPSFDNLRKIVASLGVD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS---GVFPTGNK---WNTVGVPE 122 L + + + P S F GN + + Sbjct: 58 ANWFLFGENAQTGVFAAEVGVSDVKGHPVDLSEYVFIPRYRVQASAGNGRVLSDEDYMHS 117 Query: 123 IRSPH----NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + N ++A + SM P + D+++L+++ + + + + Sbjct: 118 MAFRRYWVSNYLHAEPANLAIISVEGDSMEPTLKDHDVIMLDTSRRDPNVEGIYVLRLDD 177 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVE----MSDIEWIARILW 220 ++ K + I + S N YP V+ D+ I +++W Sbjct: 178 ALLVKQVQRIP-GKIRVSSANPAYPPFDVDLSNPAEDVAIIGKVVW 222 >gi|319789030|ref|YP_004150663.1| transcriptional regulator, XRE family [Thermovibrio ammonificans HB-1] gi|317113532|gb|ADU96022.1| transcriptional regulator, XRE family [Thermovibrio ammonificans HB-1] Length = 222 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 9/212 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ E L+ S +A++ G+ ++ + ++ G + R ++ +I A N Sbjct: 3 VNERLRKLREHLGLSQSKMAKELGVSLKTYQRYEQVGYDIPER-----ALRQIEATFNVN 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L R + + + F G + P+ Sbjct: 58 PEWLRQGKGEMFRPKTEAQIIATPEFVVKPIPLIAEGEAGF--GQFIPNLVEPDKVVWFP 115 Query: 129 GIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 ++ + K SM P +GDI++++ V GD + + G +V K Sbjct: 116 VPTSLANHRLFFIKVVGNSMEPRIFEGDIVLVDKDATVGKGDLVAALLKDGTLVVKRYWK 175 Query: 188 RRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G ++ L S+N YP V ++ IA + Sbjct: 176 NNGDGTVVLESINPSYPPIVVRPKELRDIALV 207 >gi|197105225|ref|YP_002130602.1| SOS-response transcriptional repressor, LexA [Phenylobacterium zucineum HLK1] gi|229621740|sp|B4RBX6|LEXA_PHEZH RecName: Full=LexA repressor gi|196478645|gb|ACG78173.1| SOS-response transcriptional repressor, LexA [Phenylobacterium zucineum HLK1] Length = 229 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 5/223 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + ++PS K LD S + R R Sbjct: 1 MLTRKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHRLITALEERGFLRRLPHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNT 117 + L P + + E + G G Sbjct: 61 ARALEVVRLPQQATAAAPPKGRAPFKPQLVEAGQAMPVAANDTRELPILGKIAAGTPIEA 120 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + R P + + Q SM+ GD +++ N GD ++ Sbjct: 121 IQQERDRLPVPEAMLGAGEHFVLEIQGDSMINAGILDGDFVVIRRTDSANSGDIVVALVD 180 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + SI L + N Y + R++ Sbjct: 181 GEEATLKRLRKKGA-SIALEAANPAYETRIFGPDRVAVQGRLV 222 >gi|156523050|ref|YP_950425.2| putative c repressor [Pseudomonas phage DMS3] gi|156513709|gb|ABG66655.2| putative c repressor [Pseudomonas phage DMS3] Length = 236 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 79/215 (36%), Gaps = 12/215 (5%) Query: 11 EAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I+R+ + + S LAR AG+ + + G P+ + + A + Sbjct: 23 AFIERLRSIVAIAGSASALARNAGISQGGLQRYLKGG------EPTRRVLISLAKAAGVS 76 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ S ++ +Y P + G + G T + R + Sbjct: 77 LGWLMTGEGSQKPEEQEATGSDQYVYVPLYDARVSAGHGSWSEGAHVLT-QLAFTRYSLS 135 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 T+ + + SM PL GD ++++ ++ + + + + AK L + Sbjct: 136 KKGLEPTRMSAVRVGGDSMEPLLSDGDAVVIDHDLRTVRDEAIYVIRVGDQLYAKRLQRQ 195 Query: 189 RGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 SI ++S N Y V D++ I R++W Sbjct: 196 FDGSIAIISENKAYKDMVVPKDQLSDLDIIGRVVW 230 >gi|85374557|ref|YP_458619.1| putative transcriptional regulator, repressor [Erythrobacter litoralis HTCC2594] gi|84787640|gb|ABC63822.1| putative transcriptional regulator, repressor [Erythrobacter litoralis HTCC2594] Length = 220 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 69/212 (32%), Gaps = 7/212 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + +A+ + S L+ G + + + R G + + + Sbjct: 12 RLLELAQEKGVGLSKLSALIGRNSSYLQQFVRR---GSPKKLEEGDRRLLAEFFGVDESE 68 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHNGI 130 L + + + P G F + ++ G +G Sbjct: 69 LGANKEKSYNASPSLLADEDFVAIPRLSIAVAAGPGQFAGDESPFDNFGFSGRWLRDHGF 128 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + + SM PL R GD ++++ + +++ ++ K L Sbjct: 129 --DPKMLSSVTVEGDSMEPLLRDGDEILVDRSPGPLRDGIHVVR-LGETLMVKRLSRSGQ 185 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 I L+S N YP + + D+E I R++W S Sbjct: 186 GRISLLSQNLAYPPLDMALEDVEVIGRVVWKS 217 >gi|253582988|ref|ZP_04860206.1| peptidase [Fusobacterium varium ATCC 27725] gi|251835194|gb|EES63737.1| peptidase [Fusobacterium varium ATCC 27725] Length = 229 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 15/220 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + E + + LA+ G+ + +N +R + + + IL T + + Sbjct: 6 FLRNRREEMGYSQNKLAKAIGITQSYYNTIERGEVRNPPSEEILDKMIAILQLTTKEAAE 65 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----------GVFPTGNKWNTVGV 120 L + T E+ L + G T Sbjct: 66 FKYLAAIERTPTLILEELKKLEKQKDATPKVNVSELKDLDNYIPLYSRISAGIGVFTEEA 125 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P G+ ++ + SM P + I++ ++V G+ + Sbjct: 126 PVDFISIPGVRNVE-TLFAVNVKGDSMEPTIKNSSIILCRKGVEVRNGEIGAFIVN-EES 183 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 K L G I L+S N Y + + + ++L Sbjct: 184 YVKRL-KVTGNYIALISDNPNYQPIYIGPGEEFSVVGKVL 222 >gi|160873890|ref|YP_001553206.1| putative phage repressor [Shewanella baltica OS195] gi|160859412|gb|ABX47946.1| putative phage repressor [Shewanella baltica OS195] Length = 240 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 70/232 (30%), Gaps = 21/232 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + + I + +T L G+ + + ++ P ++F + + Sbjct: 11 KTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDET-----APKGANLFALAKSLK 65 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKW-NTVG 119 + LL+ + + + L+ F+ G V Sbjct: 66 CDLSWLLNGQVAAKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGIAEGVE 125 Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + +S K SM P+ G + ++++ ++ Sbjct: 126 YKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIIDGKMYAI 185 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD---IEWIARILWAS 222 G + K+L G + L S N +P + + I+ I ++ W S Sbjct: 186 NHDGMMRVKMLYKLPGGGLRLRSYNLDEWPDEHISHEQLKHIKIIGKVFWYS 237 >gi|189350245|ref|YP_001945873.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] gi|189334267|dbj|BAG43337.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] Length = 246 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 21/235 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-----------TES 57 + + + E +L+ + LA +AG+ T+ + +G S ES Sbjct: 4 LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGSKHLLSIARALGVNPAWLES 63 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 A+ Q + + + L + F G Sbjct: 64 ESGPKDASAAAAPQPGIYKIPEDQGNVLVWEHPDDLPPDENRVWLDRYDYRFSAGTGLIQ 123 Query: 118 VG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 +P + + + SM P D++++++A ++ Sbjct: 124 WEVRQKKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTAKNHIRDGKV 183 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEM---SDIEWIARILWAS 222 G+ + K + + G SI L S+N YP V + + +++ S Sbjct: 184 YAIYFEGEPLVKQIFKQAGGSICLHSINAGKYPDKIVTPELMESVTIMGEVIYRS 238 >gi|77164141|ref|YP_342666.1| peptidase S24, S26A and S26B [Nitrosococcus oceani ATCC 19707] gi|254435083|ref|ZP_05048590.1| Peptidase S24-like domain protein [Nitrosococcus oceani AFC27] gi|76882455|gb|ABA57136.1| phage repressor protein, Serine peptidase, MEROPS family S24 [Nitrosococcus oceani ATCC 19707] gi|207088194|gb|EDZ65466.1| Peptidase S24-like domain protein [Nitrosococcus oceani AFC27] Length = 225 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 85/231 (36%), Gaps = 25/231 (10%) Query: 1 MTSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTES 57 MT H +I ++ + + + LAR AG + + ++ + +G R E Sbjct: 1 MT-LKHNQIRLHNLEVLITEAG-SAAKLARMAGTNSSYLSQVRNQLPTKKGTPRSIGDEL 58 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVF 109 K+ A + + LP E+ PL+ + +G+ Sbjct: 59 AGKLEKAMKKPQGWMDTLPADGTTPQEENNAHDGPDLRSLHPLISWVQAGNWYEVSESFV 118 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 P + P SP + + + +SM P + + D++ ++ + + G Sbjct: 119 PA-YGSELLPCPVRCSP---------ESFVLRVRGSSMEPKFHEDDLIFVDPNVSADHGK 168 Query: 170 RLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++++ + K LI G+ L +LN +P +E+ + I ++ Sbjct: 169 YVVVRLDESNEATFKQLIIEDGKQY-LKALNPDWPNRIIEVDEEATICGVI 218 >gi|83858367|ref|ZP_00951889.1| LexA repressor [Oceanicaulis alexandrii HTCC2633] gi|83853190|gb|EAP91042.1| LexA repressor [Oceanicaulis alexandrii HTCC2633] Length = 227 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 5/222 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I++ ++PS K L+ S + R R Sbjct: 1 MLTKKQHELLLYINKRLSEDGVSPSFDEMKEALNLASKSGVHRLVSALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + P + + S G G + Sbjct: 61 ARALEVLKLPQGGSGNSPAPSKTNVVSADFGSSV-SDERSHGVEVPVLGRIAAGVPIEAI 119 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 R P + + SM GD++I+ N GD ++ Sbjct: 120 QHETDRLPVPAEMISGGEHFALEVHGDSMIEAGILDGDLVIIKRGDTANTGDIVVALVHD 179 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L ++G SI L + N Y ++++ R++ Sbjct: 180 EEATLKKL-RKKGGSIALEAANPAYETRIFGPNEVKVQGRLV 220 >gi|260868456|ref|YP_003234858.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|257764812|dbj|BAI36307.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] Length = 229 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 8/203 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I M + + + LARK G+ S R + I Sbjct: 9 NRIAMMLKTKGWSQAELARKLGVSAQSVQYWTTGKT--FPRSDKLAQLSVISGYPQSWFL 66 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPH 127 ++ + G G+ + ++ + + Sbjct: 67 GEDASSTFSSAEKHHTREDSVVFNVLDVEFS--CGDGTHVRGDLIDVVRSIELDPEYARR 124 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + SM P GD+L L+ + GD + G+ K L Sbjct: 125 LVGNRAFKNIEIGNARGDSMAPTISPGDLLFLDKTVTYFDGDGIYAFCFDGECYVKRLQK 184 Query: 188 RRGRSIDLMSLNCCYPVDTVEMS 210 G I ++S N Y ++E Sbjct: 185 I-GSKIMVLSDNPNYQPWSIEKE 206 >gi|89054365|ref|YP_509816.1| LexA repressor [Jannaschia sp. CCS1] gi|122999507|sp|Q28R71|LEXA_JANSC RecName: Full=LexA repressor gi|88863914|gb|ABD54791.1| SOS-response transcriptional repressor, LexA [Jannaschia sp. CCS1] Length = 228 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 5/223 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + + + E I + +R + PS K LD S + R R Sbjct: 1 MLTRKQRDLLEFIHKRMQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + ++ + + + G G + Sbjct: 61 ARAIEIVKMPDAMTGGGFEPRVIDGDRGPAPANAMAVRAAPAREVPVMGQIAAGVPIEAI 120 Query: 119 GVPEIRSP-HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + + + SM+ GDI+++ + GD ++ Sbjct: 121 SQVASHVAVPEQMLGAGGNHYALEVKGDSMIDAGINDGDIVVIEEGNTADNGDIVVALVE 180 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + G I L + N Y ++ +++ Sbjct: 181 DHEATLKRLRRK-GGMIALEAANPAYETRVFRDDQVKVQGKLV 222 >gi|296136472|ref|YP_003643714.1| putative phage repressor [Thiomonas intermedia K12] gi|295796594|gb|ADG31384.1| putative phage repressor [Thiomonas intermedia K12] Length = 224 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 74/224 (33%), Gaps = 11/224 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + K++ AI+ + ++ LAR + P S G ++R ++F+ Sbjct: 1 MLTGKELGAAIEAARLKKGVSKVTLARAMEIKPPSVQDWIHHGRVAKSR---LGALFQYF 57 Query: 63 AATNETICQLLDLPFSDGRTTE--KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + + +P + G + G + Sbjct: 58 SDVVGPEHWGVREEWGYNPSLRIVDGMVTLPQYDLKAAAGPGRYLEAQLRVGAVQVCQDI 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 ++G+ T SM P GDI++++ +++ D + + + Sbjct: 118 VARILRNSGV--ALTSLALVTVAGDSMEPTINDGDIVVIDRSVETIDRDGVYLFTFGDET 175 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 K + +S+ + S N Y + + + R++WA Sbjct: 176 FIKRIQRMP-KSLSVNSDNGLYKGWEISSEETSSLHVHGRVIWA 218 >gi|217975711|ref|YP_002360310.1| putative phage repressor [Shewanella baltica OS223] gi|217501061|gb|ACK48948.1| putative phage repressor [Shewanella baltica OS223] Length = 231 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 69/214 (32%), Gaps = 13/214 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ + R+ G+ ++ ++ + + R ++ I KI+ Sbjct: 25 RNLKQLRIDLGFSQEEFGRRIGVTKSTISQWEAGKSQARRKF-----IKKIIETF----- 74 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPHN 128 +L D F E F+ G+ + I Sbjct: 75 ELEDNYFDIVDREEANVDSCKSNCESSFKRIPFYSDVKVAAGSGYCNREEVYELILVKDL 134 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V ++ + + + K Sbjct: 135 PALSNYKKLFCITVTGDSMEPALKDGSLIVVDPTQTVVRDGKIYVFRQGDVLRVKAFSYE 194 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 + + + S N Y + + ++E + R++++S Sbjct: 195 K-QMVKAKSYNEFYKDELYRLDELELLGRVVFSS 227 >gi|329115279|ref|ZP_08244034.1| Phage Repressor [Acetobacter pomorum DM001] gi|326695722|gb|EGE47408.1| Phage Repressor [Acetobacter pomorum DM001] Length = 214 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 29/231 (12%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++IW A+D +A+ LTPSGLAR AGLD T+FN S+R G RWP+ S+ + L Sbjct: 1 MIPAERIWHALDTLAQERGLTPSGLARAAGLDATTFNPSRRHTGHGVWRWPALPSLLRAL 60 Query: 63 AATNETICQLLDLPFSDGRTT---EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++ Q + + + L GG D P G W Sbjct: 61 DVLRVSLAQFEAHLWGYEQPDGAKTPAPCFMRSLPLSWLDQGGVLDRAGLPAGGLWEQEE 120 Query: 120 VPEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +++ + + M P+ R G L++ A+ DR+++ Sbjct: 121 T---------FFSLPSSSAYMLRVDTEGMEPILRLGCSLVVQPALHPRGADRVVLIRAGQ 171 Query: 179 DIVAKVLISRRGRSID------LMSLNCCYPVDTVEMSDI-EWIARILWAS 222 V +L + R+I L V + W+ RI+ S Sbjct: 172 APVVGILQEKPVRAIQPFGRSALQP---------VPAAAAGVWLHRIVLIS 213 >gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185] gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185] Length = 263 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 20/236 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + I + I + LT +A + P+S + + + + + ++ K L Sbjct: 23 QGEMIGDRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGK--NLINLSKALNC 80 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--------GFFDSGVFPTGNKWN 116 + E + + + T E + + F+ GN Sbjct: 81 SPEWLLSGKEDNQARVSTVESNAEWHAGFDLWDGDTPLRDDEVALPFYREVELAAGNGST 140 Query: 117 TVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 V + +S SMLP+ + G + ++++ + + Sbjct: 141 FVQENGGCKLRFAKSTLKKSNVDPQYAACVTVSGDSMLPVLQDGTTVGVDTSKKNIIDGK 200 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222 + G + K+L G I + S N YP + ++ I+ I + W S Sbjct: 201 MYAIDHDGMLRVKILYRMPGGGIRIKSYNNDEYPDEFIQPEQMSNIKIIGWVFWWS 256 >gi|226940913|ref|YP_002795987.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] gi|226715840|gb|ACO74978.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] Length = 262 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 30/237 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + N++ + A G+ ++ + R P + + Sbjct: 27 ELGARLKEVRKARNVSRNEAAAAVGVSVSTMQAWEAGE-----REPDATKLSSFVRHYGV 81 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP-------------PSGSGGFFDSGVFPTGNK 114 LL + + E P + G+ Sbjct: 82 RADWLLFGDGGMFKPAAPTQAESPRSEVDCPCLDTLGNPVNLQDFVFIPRYNLKASAGHG 141 Query: 115 WNTVGVPEIRSPHNGIYAI-------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 + G I S Y I + + SM + D++++N A Sbjct: 142 LDANGEKPIFSMAFRRYWIDNFLRIDPHDLSVLSVKGDSMEGVLNDRDVILINHADNA-P 200 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI----EWIARILW 220 D L + GD+V K L + G I ++S N Y ++++D+ + R++W Sbjct: 201 KDGLYVLRIDGDLVVKRLQRKPGGKIGIISANEAYAPYDIDLNDLPNDFAIVGRVVW 257 >gi|145298596|ref|YP_001141437.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449] gi|142851368|gb|ABO89689.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449] Length = 227 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 75/219 (34%), Gaps = 20/219 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------KIL 62 I + I NL+ + LA+ G+ S K + + + R+ + + +L Sbjct: 3 ISDRIFSRRTALNLSKTALAKAIGVSDVSVGKWESGLNQPKGRYLNDLAAALGVTVDWLL 62 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + + Q + + + + IP++ + +G+ V Sbjct: 63 AGSGDGPEQPIPGYHNVEPAVIPQGRRIPVISYVHAGNWREMCEQATTFDGNVEYVTASV 122 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P + SMLP +++GD++I++ GD ++ + + Sbjct: 123 DIGP---------CGFGLWMRGDSMLPQFKEGDLIIVDPDEVPQPGDYVVARNGNNEATF 173 Query: 183 KVLISRRGRS-----IDLMSLNCCYPVDTVEMSDIEWIA 216 K R +L+ LN YP + I+ I Sbjct: 174 KKYRPRGVDENGQEVFELVPLNDDYPSMHSDRQHIQIIG 212 >gi|163795623|ref|ZP_02189589.1| LexA repressor [alpha proteobacterium BAL199] gi|159179222|gb|EDP63755.1| LexA repressor [alpha proteobacterium BAL199] Length = 241 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 57/236 (24%), Gaps = 18/236 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + ++ I + E ++PS K LD S + R R Sbjct: 1 MLTRKQHELLAFIQKRIEESGVSPSFDEMKDALDLKSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 ---------STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + + + + + S Sbjct: 61 ARALEVLRTADQVVARGARSDRPAARGFTPNVIPGNFPFRGDPPVAAPTPGEGPESIDLP 120 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163 G G + P + + SM+ GD +I+ Sbjct: 121 MYGRIAAGTPIEALRDPSTSIAVPASMLVGGDHYALEVSGDSMIDAGILDGDTIIIRQCD 180 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ + K L + G+SI L N Y ++ +++ Sbjct: 181 TAENGSIVVALVDEQEATLKRLRRK-GQSIALEPANSAYETRIFGPDRVKVQGKLV 235 >gi|227514731|ref|ZP_03944780.1| possible repressor lexA [Lactobacillus fermentum ATCC 14931] gi|227086935|gb|EEI22247.1| possible repressor lexA [Lactobacillus fermentum ATCC 14931] Length = 212 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 76/217 (35%), Gaps = 22/217 (10%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S++++ + ++ + ++ ++ S LARK + ++ ++ G+ ++P Sbjct: 10 SNEEVIKYLNELRKQQKISISELARKVDMSKSTVSQYFN----GKLQFP-LNRAHDFARV 64 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 T LL L S + L P + N + + P Sbjct: 65 LGVTTDDLLGLDLSKVNPINR-------LTKIPLLGTIACGDPILADENITDYLTEPVD- 116 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAK 183 Y + + + SM P + G ++++ +V G+ ++ + K Sbjct: 117 ------YLPSGKLFYLRAKGQSMEPTIKNGSLVLIRQQPEVEDGEIAAVLFTDDDEATLK 170 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + G ++ L+ N Y V + + + + + Sbjct: 171 RVKR-SGDTMILLPDNRRYEPIIVSKDNPVRILGKAV 206 >gi|154148443|ref|YP_001405854.1| hypothetical protein CHAB381_0248 [Campylobacter hominis ATCC BAA-381] gi|153804452|gb|ABS51459.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 233 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 30/234 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I ++ + T LA +G+ S + + + +TE++ KI A + Sbjct: 2 ELSNRIKQLRDIKGWTQQELADYSGVSIDSIKGYE----SKKTKNITTENLNKIAKAFDL 57 Query: 68 TICQLLDLPFSDGRTTEKK--------------EKEIPLLYFPPSGSGGFFDSGVFPTGN 113 I + S + L + S +FD G Sbjct: 58 NISNFYNNDLSVSEIEKCPLGVHKSSVSDKKSVVTPPNLKMSQDNFSVPYFDDVYASAGG 117 Query: 114 KWNTVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + P + + ++ K++ SM P K +L + V Sbjct: 118 GYINDENPPKMIEFSKSFLRDYLGTVEFSRLNIIKSKGDSMEPTIPKNALLFIRLG-DVE 176 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G + + ++ K L R + L+S N Y T++ + E I ++ Sbjct: 177 EGQICVARID-DELYVKRLQKRP--VVKLISDNPDYDPITLQPDENFEIIGCVI 227 >gi|315268235|gb|ADT95088.1| transcriptional regulator, XRE family [Shewanella baltica OS678] Length = 204 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 19/214 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E + R+ + +T LA TS K +R + R + E++ K L T Sbjct: 2 DIAERVKRLRKALGMTQYELADLVSTAQTSIQKLERGDTK-NPR--NIEALAKALQTTP- 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L + L G + P S H Sbjct: 58 ---EFLRFGVGELDNATVVASAGNYLPLISMVQAGVWTEIQELPPLDVELYPCPIKCSQH 114 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLI 186 + + SMLP + +GD++ ++ QV G ++ + K LI Sbjct: 115 ---------SFIVRVEGESMLPRFEEGDLIYVDPDAQVENGSYVVARLDDENQATFKQLI 165 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + L +LN +P VE++ + + +++ Sbjct: 166 IDGNKKY-LKALNPDWPNKFVEINGNCTIVGKVV 198 >gi|326795087|ref|YP_004312907.1| phage repressor like transcriptional regulator, XRE family [Marinomonas mediterranea MMB-1] gi|326545851|gb|ADZ91071.1| phage repressor like transcriptional regulator, XRE family [Marinomonas mediterranea MMB-1] Length = 216 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 13/216 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E + LT + LA K G+ S K + + R P + + A Sbjct: 2 NIAERVKTQRIHLGLTQTELANKVGISQQSLQKIE----DARTSNPR--KLLALAKALEC 55 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T L + E P + + + Sbjct: 56 TPEWLQFGIEGVSSGEAESNVEAAPFKAPSKKLPVVSHVQAGAWSEAIDYRSLADDIEWE 115 Query: 128 NGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVA 182 ++ K SM +G +++++ I + G ++ K T ++ Sbjct: 116 ESPFSASDNAFWLKVVGDSMTSPVGTSIPEGHLILVDPDIPADNGSLVVAKLDGTDEVTF 175 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L G+ L LN Y + + + + Sbjct: 176 KKLYIDAGQKY-LKPLNPNYRPFEINGN-CRIVGVV 209 >gi|160876037|ref|YP_001555353.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160861559|gb|ABX50093.1| transcriptional regulator, XRE family [Shewanella baltica OS195] Length = 204 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 19/214 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E + ++ + +T LA TS K +R + R + E++ K L T Sbjct: 2 DIAERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTK-NPR--NIEALAKALQTTP- 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L D L G + P S H Sbjct: 58 ---EFLRFGVGDMDNATVVASAGNYLPLISMVQAGVWTEIQELPPLDVELYPCPIKCSQH 114 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLI 186 + + SMLP +R GD++ ++ QV G ++ + K LI Sbjct: 115 ---------SFIVRVEGESMLPDFRPGDLIYVDPDAQVENGSYVVARLDDENQATFKQLI 165 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + L +LN +P VE++ + + +++ Sbjct: 166 IDGNKKY-LKALNPDWPNKFVEINGNCTIVGKVV 198 >gi|240016860|ref|ZP_04723400.1| transcriptional regulator [Neisseria gonorrhoeae FA6140] gi|240113645|ref|ZP_04728135.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|240116383|ref|ZP_04730445.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|240117610|ref|ZP_04731672.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|240123164|ref|ZP_04736120.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|260439787|ref|ZP_05793603.1| putative phage repressor protein [Neisseria gonorrhoeae DGI2] gi|268599708|ref|ZP_06133875.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268602050|ref|ZP_06136217.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268603316|ref|ZP_06137483.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268681792|ref|ZP_06148654.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|291043050|ref|ZP_06568780.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|268583839|gb|EEZ48515.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268586181|gb|EEZ50857.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268587447|gb|EEZ52123.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268622076|gb|EEZ54476.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|291013025|gb|EFE05001.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] Length = 238 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 64/242 (26%), Gaps = 29/242 (11%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H+ + D + TP+ AR + + + R S +++ ++ Sbjct: 1 MEKHETVIRLFDAAKTKGKNTPAETARLLNISQQTLKNWES-------RGISAKALPEVA 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------------GFFDSG 107 + L S + + Sbjct: 54 QVLGVSETWLRTGEGSRTAPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKES 113 Query: 108 VFPTGNKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 F G + +P +S SM + + +++ Sbjct: 114 CFKGGAGAYEIPDYNGYRLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDT 173 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILW 220 ++ + G K LI + G S+ + S N YP +T + + I R+ W Sbjct: 174 GETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFW 233 Query: 221 AS 222 S Sbjct: 234 WS 235 >gi|187733300|ref|YP_001879888.1| repressor protein C2 [Shigella boydii CDC 3083-94] gi|187430292|gb|ACD09566.1| repressor protein C2 [Shigella boydii CDC 3083-94] Length = 218 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 88/218 (40%), Gaps = 13/218 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + ++ LT LA+KAG+ + +K+++ + + +++FK+ AA Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGITRVAISKAEQGLT----KSFNGDTLFKVAAALG 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L + + E K P S + + + + Sbjct: 58 CSPQWLQNGDEK-DKHWENNVKSCPQRDTAHSYPVINWVQAGLFATSGDDYNMYDQDNWR 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181 H+ YA + + + SM + +G +++N +V G ++ + + T + Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K IS G++ L LN YP+ ++ +D E + ++ Sbjct: 176 FKKYISDMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211 >gi|170717358|ref|YP_001784466.1| phage repressor [Haemophilus somnus 2336] gi|168825487|gb|ACA30858.1| putative phage repressor [Haemophilus somnus 2336] Length = 229 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 61/228 (26%), Gaps = 22/228 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ + + ++ S LAR G+ S +K R P +I +I A Sbjct: 2 NTLASRLNYLMNKIGVSQSELARYIGITQPSVHKILNGET----RNPK--NIVEIATALG 55 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L T + G+ PE S Sbjct: 56 VDVHWLKTGEGEPNITPHSSI-LVSNEPDEKHTHRINRYDFQLSAGDGIINSDYPETISS 114 Query: 127 HNGI---------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + K SM P D++ +++ I GD + Sbjct: 115 IWLTPEGMMQIIGRYSEKGICIFKVPTDSMEPTISSKDLVFIDTNITYFAGDGIYAFRLN 174 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIA---RIL 219 G K L I +S N Y + E + R++ Sbjct: 175 GKDYIKRLQQLPTGIIRALSDNKLYDPFDITEELFDTAEIVGKFIRVV 222 >gi|217973784|ref|YP_002358535.1| putative phage repressor [Shewanella baltica OS223] gi|217498919|gb|ACK47112.1| putative phage repressor [Shewanella baltica OS223] Length = 243 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 22/236 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + + I + L+ +A+ G++ S + + G G P ++ + Sbjct: 3 KSMGKRIAERRKELGLSQDVVAKYVGINRVSVSNWETDGKNGT--SPKGANLIALAELLK 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP----------PSGSGGFFDSGVFPTGNKWN 116 T LL+ +T ++ F + F+ GN Sbjct: 61 CTPEWLLNGEDEALKTENRESNAQWHAGFELWDGDTPLRDDEVALPFYREVELAAGNGST 120 Query: 117 TVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 V + +S SMLP+ R G + ++++ + Sbjct: 121 FVQENGGCKLRFAKSTLKKSNVDPQHAACVTVSGNSMLPVLRHGTTVGVDTSKKSIIDGE 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS---DIEWIARILWAS 222 + G + K+L G I + S N +P + ++ +I+ I + W S Sbjct: 181 MYAIDHDGMLRVKMLYRTPGGGIRIKSYNNDEFPDEFIQPDKVSEIKIIGWVFWWS 236 >gi|209919283|ref|YP_002293367.1| putative phage repressor [Escherichia coli SE11] gi|209912542|dbj|BAG77616.1| hypothetical phage repressor [Escherichia coli SE11] Length = 218 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 87/218 (39%), Gaps = 13/218 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + ++ LT LA+KAG+ + +K+++ + + +++FK+ AA Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTLFKVAAALQ 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L + + E K P S + + + Sbjct: 58 CSPQWLQNGDEK-DKHWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYNMYDQDNWR 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181 H+ YA + + + SM + +G +++N +V G ++ + + T + Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K IS G++ L LN YP+ ++ +D E + ++ Sbjct: 176 FKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211 >gi|224823653|ref|ZP_03696762.1| putative phage repressor [Lutiella nitroferrum 2002] gi|224604108|gb|EEG10282.1| putative phage repressor [Lutiella nitroferrum 2002] Length = 324 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 23/232 (9%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S + + + E LT LA++ G+ + N + +G T+ + I A Sbjct: 93 SMDTLGKRVTHARELKGLTQLELAKRVGVSAQTINFVENGRNKG------TKHLLAIAKA 146 Query: 65 TNETICQLLDLPFSDGRTTEKK-EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + L S + + E SG F Sbjct: 147 LGVSATWLDSGKGSMTEVSLRPIEVWEDEEQLAQSGEYIFLPELSVRPSAGPGAQVWHVD 206 Query: 124 RSPHNGIY---------AIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLI 173 + + SM P GD ++++ ++ + Sbjct: 207 TAGQRQAFTAKWARRMSIDPACAATMVVSGDSMEPRLLDGDSIVVDYCQNDTIIDGKVYV 266 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSD---IEWIARIL 219 ++ K L G + + S N +P V + + + R++ Sbjct: 267 LVINDEVKVKRLFKAIGGGLIIRSDNPDKNTHPDLNVRAEEMMHVRIVGRVV 318 >gi|194466453|ref|ZP_03072440.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194453489|gb|EDX42386.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 220 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 61/216 (28%), Gaps = 11/216 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + R+ + T + LA K + + + + + P S+ + Sbjct: 3 ENTIASQLKRLRKSRGWTQTQLADKLSVSKQTISNWETGT-----KVPRMGSLQNLADLF 57 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + I ++ + T I G G+ E Sbjct: 58 HVKIGEITNASIIKEETQSHLPTNIIYPLGDDFERISIPLIGEIACGDPITADENIEGYV 117 Query: 126 PHNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAK 183 + + + SM P G I+ + V G+ ++ + K Sbjct: 118 EEIFEKPVPKGNLFALRCKGKSMEPTIHDGSIVTIREQPTVEDGEIAAVLVDGDNEATLK 177 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + G I LM N + ++ + RI+ Sbjct: 178 RVKHQ-GNLIMLMPDNKEFDPIILDKDN---PGRIV 209 >gi|57234333|ref|YP_181610.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234921|ref|YP_181022.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234968|ref|YP_180999.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57224781|gb|AAW39838.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225369|gb|AAW40426.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225416|gb|AAW40473.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] Length = 217 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 74/217 (34%), Gaps = 18/217 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + ++ +T S LAR++G+D ++ + G+ + K+ + + Sbjct: 7 IGITLKELRKKIGMTQSELARRSGVDRAYISQLE----SGKTYSATLGIAQKLARGLDIS 62 Query: 69 ICQLLDLPFSDGRTTEKKE-----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 LL + + + + P G + + V VP+ Sbjct: 63 TSALLGEKEESLGNLLSRAQAISRRMDDIEFIPVIGYIPAGYPELVDEEAASDYVPVPKE 122 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + S+ GDI+I++ ++ G ++ ++ A Sbjct: 123 LLKN-----ASKRVYALRVSGESLKGDGIENGDIIIVDKDSEMFEGKIYAVRTAHNEVTA 177 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L I L S N Y + +D + R++ Sbjct: 178 KHLY-LNNGQIILRSSNGDYKDLVMTNAD--ILGRVI 211 >gi|18249875|ref|NP_543063.1| putative lambda repressor [Enterobacteria phage phiP27] gi|18152342|emb|CAC83529.1| putative lambda repressor [Enterobacteria phage phiP27] Length = 218 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 86/218 (39%), Gaps = 13/218 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + ++ LT LA+KAG+ + +K+++ + + +++FK+ AA Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTLFKVAAALQ 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L + E K P S + + + Sbjct: 58 CSPQWLQSGDEK-DKHWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYNMYDQDNWR 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181 H+ YA + + + SM + +G +++N +V G ++ + + T + Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K IS G++ L LN YP+ ++ +D E + ++ Sbjct: 176 FKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211 >gi|254460292|ref|ZP_05073708.1| LexA repressor [Rhodobacterales bacterium HTCC2083] gi|206676881|gb|EDZ41368.1| LexA repressor [Rhodobacteraceae bacterium HTCC2083] Length = 232 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 66/229 (28%), Gaps = 13/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I++ ++ + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFINKRMQKDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + T + F G+ + + + G G Sbjct: 61 ARAIEIVKLPDSLGMTPAGFVPRVFEGGKPDVPAPRNAQPVEAIHA--MELPVMGQIAAG 118 Query: 113 NKWNTVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + + + + + + SM+ GD +++ + GD Sbjct: 119 VPIEAISHASHNVAVPSQMLSGPGEHYALEVKGDSMIDAGINDGDTVVIRETNTADNGDI 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K G +I L + N Y ++ R++ Sbjct: 179 VVALVEDQEATLKRFHR-NGTTIALEAANPAYETRFFSHEQVKVQGRLV 226 >gi|71901612|ref|ZP_00683692.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] gi|71728622|gb|EAO30773.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] Length = 406 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 67/250 (26%), Gaps = 43/250 (17%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + +T LA G+ P S + + ++ E++ K A N + Sbjct: 153 LAERLRIAMIEAGMTQKQLADAVGVKPPSIHGWL----SSKAKFLRGENLLKAAKALNVS 208 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP---------------------SGSGGFFDSG 107 L T +E PL + Sbjct: 209 EKWLATGTGLMRAVTAIPAQETPLRQESQHINLDTYEFQAIDDGEALDPEANVLVDEVDV 268 Query: 108 VFPTGNKWNTVGV-------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + GN P + + SM D +++N Sbjct: 269 MLSAGNGVLIPEFIETKFQMPFPLPWLRHAHINPKDVKLMRVHGDSMERTLFDKDRVMVN 328 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD- 211 A ++ G+ K L + R + ++S N Y + V S+ Sbjct: 329 FADTRVRDGKVYAIAIGGEAKVKRLYTLRNNGLRIVSDNQNKDSEGHRIYKDEIVPPSEM 388 Query: 212 --IEWIARIL 219 ++ + R++ Sbjct: 389 ETVQVLGRVI 398 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + H +T LA G + + G R PS I I T Sbjct: 77 ENLRRLRKSHGMTQEQLALTCGWGQSRIANYESRGSSA--REPSFNDIEIISRVLGVTKA 134 Query: 71 Q 71 + Sbjct: 135 E 135 >gi|56964628|ref|YP_176359.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16] gi|56910871|dbj|BAD65398.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16] Length = 209 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 18/215 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + R + + LA + + ++ ++ R P E + I + T Sbjct: 8 LAENLMKARIRKGYSQTDLAEILNVSSATISQYEKG-----KRSPDVEKLHTIAKVLDTT 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I +L+ + + + + +G + G + Sbjct: 63 IPELIMGQSDNEALKLNMQSLVKIPILGTVRAGYNLLADENVIGYAY-----------AP 111 Query: 129 GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + SM+ GD +++ + G ++ + K + Sbjct: 112 KSDIGDGDYFYLNIEGDSMIDAGLNSGDRILVRKQNHTSDGSIAVVLINGEEATVKRVFF 171 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 + I L N + +I + +++ AS Sbjct: 172 DSNKVI-LSPENPHMRPQFYDEDEIRILGKVVSAS 205 >gi|295106591|emb|CBL04134.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Gordonibacter pamelaeae 7-10-1-b] Length = 215 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 22/220 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I R+ H LT L + AG+ P + ++ + P +I ++ Sbjct: 2 ELGSNIKRLRVEHCLTQGELGKIAGVSPMAVSQWENGRAV-----PRMGAIQRMADYFGI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + + + G G+ + V E Sbjct: 57 SK----SSLIDNAADGFVAGSVHYEVTSLTAPVYG-----RISAGDALEMLPVTEEAYVI 107 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + SM + G ++ + + +V GD + + D K + Sbjct: 108 PPVAESHPDGFFLTVSGDSMDKIMPNGSLVYFDKSAEVRSGDIVAVTVNGDDATMKRIFF 167 Query: 188 RRGRSIDLMSL--NCCYPVDTVEMSD-----IEWIARILW 220 G +I L N + +++ SD + + + +W Sbjct: 168 -AGDTIVLHPESNNPSHRDRSIDASDPDAPQVRILGKAVW 206 >gi|312897732|ref|ZP_07757148.1| LexA repressor family protein [Megasphaera micronuciformis F0359] gi|310621116|gb|EFQ04660.1| LexA repressor family protein [Megasphaera micronuciformis F0359] Length = 218 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 18/221 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAA 64 + I + I + H L+ ++ GL + +R + PS +++ I Sbjct: 2 ENIGDLIREYRQSHGLSMEEFGKRVGLSKAYISLIERGKNTRSNKPIVPSIDTMKAIADG 61 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + LL + + G V Sbjct: 62 LEMDLDVLLRSIDPSQKIKINNTHPKGVQIPVLGR---------VVAGVPLEAVEEILDY 112 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 A + + + SM P +GD++I+ V+ GD ++ + K Sbjct: 113 EEITPELAATGEFFALQIRGRSMEPRMLEGDVVIVRRQSDVDSGDIAIVLVNGDEATVKR 172 Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARIL 219 + R I L++ N Y + ++ + +++ Sbjct: 173 VSK-SDRGITLIATNPNVYEPHFYSSEEINDLPVQILGKVV 212 >gi|183600843|ref|ZP_02962336.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827] gi|188019628|gb|EDU57668.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827] Length = 234 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 23/230 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + +T + LA+ G+ + K + R + +I A N Sbjct: 5 LAQRLKQARKNAGITQNELAKLVGVSQAAIQKIETGKAATSTR------LIEISKALNVD 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTVG-VPEIRS 125 L + +I L + G + E + Sbjct: 59 PEWLSVGTGDNPVPHISSSVKIELADDVGNIERYRVEVLDVEASAGEGVIVIDDFIETIT 118 Query: 126 PHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + SM + D + ++ GD + + Sbjct: 119 SIEYSVEEAKRLFGGRPSNTIKMITVKGDSMAETFEPRDQIFVDITTNFFDGDGIYVFVL 178 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILWASQ 223 + K L + + + ++S N Y ++ I A++L SQ Sbjct: 179 DNQLYIKRLQKQY-KRLAVISDNPRYETWYLDEDAINGLYICAKVL-VSQ 226 >gi|114569948|ref|YP_756628.1| LexA repressor [Maricaulis maris MCS10] gi|122316090|sp|Q0APU7|LEXA_MARMM RecName: Full=LexA repressor gi|114340410|gb|ABI65690.1| SOS-response transcriptional repressor, LexA [Maricaulis maris MCS10] Length = 232 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 67/228 (29%), Gaps = 12/228 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + ++ I + ++PS LA K+G+ +R I Sbjct: 1 MLTRKQNELLLFIHNRIKETGVSPSFDEMKGALQLASKSGVHRLITALEERGFIRRLAHR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ + + +P D + + G G Sbjct: 61 ARALEVLKLPESAA--AHETPAIPKGDLGANVVRGNFAKPEPDARENTVDIPMLGRIAAG 118 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171 + + R P + + + + SM GD +++ GD + Sbjct: 119 VPISAIQHETDRFPVPADMVMGGEHFGLEVKGDSMIEAGIMDGDTVLIRRCQSAETGDIV 178 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K L ++G S+ L + N Y ++ R++ Sbjct: 179 VALIDDEEATLKRL-RKKGGSVALEAANPEYETRIFPPDRVKVQGRLV 225 >gi|192291420|ref|YP_001992025.1| phage repressor [Rhodopseudomonas palustris TIE-1] gi|192285169|gb|ACF01550.1| putative phage repressor [Rhodopseudomonas palustris TIE-1] Length = 264 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 18/228 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE-----SIFKILAA 64 I + E+ + LA + G+ + K + P + + + Sbjct: 33 GNIIRQAREQKGWSQKDLADRVGISQPAIRKIEGGSTVKSKHLPKIAQVLGLDLQHLDES 92 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS--------GSGGFFDSGVFPTGNKWN 116 ++ S G + L + +G + K Sbjct: 93 LDQLTNVESQAFSSTGDVNHHRPASGILEIDVRAGMGGGGSVEGREVVHNGRYSDPVKEE 152 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 P + A +++ +TQ SM P GD +I+++ ++ D + Sbjct: 153 AWHFPARFLREE-LRAPESRVQILETQGDSMAPTILSGDRVIIDTGHRLPSPDGIYAIRD 211 Query: 177 TGDI-VAKVLI---SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 V K L +I ++S N + + V +I + R+LW Sbjct: 212 RFGAIVVKRLQVLRRGEPPTIRVISDNKAHDSEDVGADEIHIVGRVLW 259 >gi|320178346|gb|EFW53317.1| repressor protein c2, putative [Shigella boydii ATCC 9905] Length = 218 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 13/218 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + ++ LT LA+KAG+ + +K+++ + + +++FK+ AA Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTLFKVAAALQ 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L + G+ E K P S + T + + Sbjct: 58 CSPQWLQNGDEK-GKHWENNVKSCPQRDTAHSYPVINWVQAGLFTTAGDDYNMYDQDNWR 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181 H+ YA + + + SM + +G +++N +V G ++ + + T + Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPIGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K IS G++ L LN YP+ ++ +D E + ++ Sbjct: 176 FKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211 >gi|188491927|ref|ZP_02999197.1| repressor protein C2 [Escherichia coli 53638] gi|194434099|ref|ZP_03066368.1| repressor protein C2 [Shigella dysenteriae 1012] gi|188487126|gb|EDU62229.1| repressor protein C2 [Escherichia coli 53638] gi|194417643|gb|EDX33743.1| repressor protein C2 [Shigella dysenteriae 1012] gi|332096959|gb|EGJ01947.1| repressor protein C2 [Shigella dysenteriae 155-74] Length = 218 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 88/218 (40%), Gaps = 13/218 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + ++ LT LA+KAG+ + +K+++ + + +++FK+ AA Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTLFKVAAALQ 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L + G+ E K P S + + + Sbjct: 58 CSPQWLQNGDEK-GKYWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYNMYDQDNWR 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181 H+ YA + + + SM + +G +++N +V G ++ + + T + Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPIGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K IS G++ L LN YP+ ++ +D E + ++ Sbjct: 176 FKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211 >gi|261318541|ref|ZP_05957738.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|265986342|ref|ZP_06098899.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|261297764|gb|EEY01261.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|264658539|gb|EEZ28800.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 170 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 75/146 (51%), Gaps = 9/146 (6%) Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 + IPLL +G+GG+FD FP G W+ V P Sbjct: 34 RHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTGEG---------V 84 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 + SMLPLYR GD LI+ V GDR++++ R G+++AK+L + R+I+L S Sbjct: 85 YALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTIELHS 144 Query: 198 LNCCYPVDTVEMSDIEWIARILWASQ 223 LN +P E DIEWIARILWASQ Sbjct: 145 LNPEHPNRIFESKDIEWIARILWASQ 170 >gi|330897368|gb|EGH28787.1| peptidase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 286 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 65/217 (29%), Gaps = 16/217 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + L + LA +AG+ TS + +R + T + KI Sbjct: 71 DRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKA------TAHVAKIADVCGVNAL 124 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNG 129 L D E + S + G V P + Sbjct: 125 WLSDGKGDMTAFITSNEPSNVSMAEQSSRMYRYPLVSWVAAGEWSEAVEPYPPGAADEYD 184 Query: 130 I--YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182 + Y + + SM P +G +++++ +V G ++ + + Sbjct: 185 VSDYKAKGPAFWLVVKGDSMTAPTAPSIPEGSQILIDTRAEVLPGKLVIAKLAGSNEATF 244 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ G L LN YP D I ++ Sbjct: 245 KKLVEDGGVRY-LKPLNSAYPTVQCT-EDCRIIGVVV 279 >gi|114797550|ref|YP_760490.1| LexA repressor [Hyphomonas neptunium ATCC 15444] gi|122942416|sp|Q0C1A3|LEXA_HYPNA RecName: Full=LexA repressor gi|114737724|gb|ABI75849.1| LexA repressor [Hyphomonas neptunium ATCC 15444] Length = 227 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 5/222 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + K++ I+ + ++PS K LD S + R R + Sbjct: 1 MLTTKQKELLLFINDRIKDTGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLANR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + R P G G+ + + Sbjct: 61 ARALEVLKLPDSAIPPPNARQRRDFRPALVTNQGAEAPRIAGMIPL-VGRIAAGSPISAI 119 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + G + Q SM+ GD +IL GD ++ Sbjct: 120 QQENGQVASPGGLPEGDDYFALEVQGDSMIQAGILNGDTVILKRTNTAQTGDIVVALIDG 179 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + S+ L + N + +E R++ Sbjct: 180 EEATLKRLRRKGA-SVALEAANPAFETRIFGPDRVEVQGRLV 220 >gi|119384874|ref|YP_915930.1| LexA repressor [Paracoccus denitrificans PD1222] gi|166224639|sp|A1B3Z0|LEXA_PARDP RecName: Full=LexA repressor gi|119374641|gb|ABL70234.1| SOS-response transcriptional repressor, LexA [Paracoccus denitrificans PD1222] Length = 232 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 13/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGL---DPTSFNKS-----KRFGIEGRNRW 52 M + ++ E I R + PS K L + ++ +R I Sbjct: 1 MLTRKQIQLLEFIQARMARDGVPPSFDEMKLALDLRSKSGIHRLVTALEERGFIRRLPHR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I ++ + ++ + + + G G Sbjct: 61 ARALEIVRLPESLSKGPGFQPRVIEGTMPDRPAPLPRGAMEVSVSAIELPVM--GRIAAG 118 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + + Q + + + SM GD++++ GD Sbjct: 119 VPIEAISEISHHIAVPTTMLSGQDRHYALEVRGDSMIEAGINDGDVVVIREQNAAESGDI 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + G I L + N Y + + R++ Sbjct: 179 VVALVDGYEATLKRYRRK-GNMIALEAANPAYETRVLPEDKVRIQGRLV 226 >gi|291326325|ref|ZP_06124059.2| peptidase, S24 family [Providencia rettgeri DSM 1131] gi|291314825|gb|EFE55278.1| peptidase, S24 family [Providencia rettgeri DSM 1131] Length = 229 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 79/233 (33%), Gaps = 25/233 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H++I +A R+A++ +T + LA++ G+ P S + + P + K Sbjct: 1 MKTM-HERIKQA--RLAKK--MTQAELAQQLGVTPQSVQQWETST------EPRKNRVMK 49 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-------PSGSGGFFDSGVFPTGN 113 I + LL K K + + ++ S GN Sbjct: 50 IAEILSVDAEWLLFGTAKKDGVPAKDFKSREVDTWDSKTPLNDDEVEIPYYKSIELAAGN 109 Query: 114 KWNT------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 N + +S SM P+ G + +N + Sbjct: 110 GSNGGSDNNGYKLRFSKSTLKRYGISAKDVASFPVHGDSMEPVIPSGTTVFVNMGDKTIV 169 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARIL 219 + + + K+L+ + G + + S N YP +T+++ + + R+ Sbjct: 170 DGGIYFIEQEDLLRVKILLRQPGGKLTIRSYNSIDYPDETIDIEKVRVVGRVF 222 >gi|161789249|ref|YP_001595597.1| hypothetical protein BMSA_0010 [Vibrio sp. 23023] gi|161761374|gb|ABX77020.1| H-T-H motif hypothetical protein [Vibrio sp. 23023] Length = 207 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 29/222 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + LT LA G+ + +K + + R E + +IL Sbjct: 3 VSQILKKKRVEKGLTQQDLADAIGVSAVAVSKWELGQS--KPRKKFHEKLSEILG----- 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +K + + G+ + + + Sbjct: 56 --------------VNEKVISGSEKITKSDYVEIPYYNVKAAAGHGYENDELYDREVELV 101 Query: 129 GI----YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 I YA ++ K SM+P++ G L ++S+ + L + G + KV Sbjct: 102 PIEALKYAQKSSVFCIKASGDSMVPVFFDGAKLAIDSSKTIVKDGDLYVVSYDGCLRVKV 161 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWASQ 223 L I L S N + + ++ I +++W SQ Sbjct: 162 LFKTLNG-IRLCSYNSMFKDEEYTHEELTTFRVIGKVIWYSQ 202 >gi|87200384|ref|YP_497641.1| putative phage repressor [Novosphingobium aromaticivorans DSM 12444] gi|87136065|gb|ABD26807.1| putative phage repressor [Novosphingobium aromaticivorans DSM 12444] Length = 233 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 12/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + +A ++ + L+ G + T + R +G R + Sbjct: 15 SRLVALASGRGVSLASLSALIGRNQTYLQQFVR---KGSPRKLEENDRRTLAEFFGVPES 71 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI------- 123 L + + + EI Sbjct: 72 DLGAPSRGSALVVGQGRGIVVPTTRAALAEWADIPRLPLGASAGPGALPAEEIPSGRLRF 131 Query: 124 -RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 G + + + SM P R GD ++++ + +I+ ++ Sbjct: 132 SHRWLKGQGLEPAMLSVIEVEGDSMEPTLRDGDEILVDRTARPMRAGIHVIRLD-DMLLV 190 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 K L G + ++S N YP ++E + R++W Sbjct: 191 KRLEPGPGGILRVISDNGAYPRIERPAHEVEIVGRVVW 228 >gi|294853434|ref|ZP_06794106.1| peptidase family S24 [Brucella sp. NVSL 07-0026] gi|294819089|gb|EFG36089.1| peptidase family S24 [Brucella sp. NVSL 07-0026] Length = 160 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 75/146 (51%), Gaps = 9/146 (6%) Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 + IPLL +G+GG+FD FP G W+ V P Sbjct: 24 RHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTGEG---------V 74 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 + SMLPLYR GD LI+ V GDR++++ R G+++AK+L + R+I+L S Sbjct: 75 YALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTIELHS 134 Query: 198 LNCCYPVDTVEMSDIEWIARILWASQ 223 LN +P E DIEWIARILWASQ Sbjct: 135 LNPEHPNRIFESKDIEWIARILWASQ 160 >gi|46200913|ref|ZP_00056183.2| COG2932: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 221 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 13/224 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + + + + L P +A AG+ + R GR+ PS+E + + Sbjct: 1 MTT----TLADRMRARMKELELRPLHVAEAAGVGRSFVYDILR----GRSADPSSEKLTR 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A I LL + P G Sbjct: 53 VAAVLQMPIEALLYDEDGKQAPAVTTPSRRDYVAVPFVDVEADMGGGAVAESE-EEGAPW 111 Query: 121 PEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 +S G+ + + + SM P GD+++L++ + + + Sbjct: 112 HFPKSWLRGVLRLRPAGLRLIRVRGDSMEPTLLGGDVVMLDTTQTIPNPTGIFVLHDGFG 171 Query: 180 IVAKVLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARILW 220 +VAK L G I ++S N Y +I I RI+W Sbjct: 172 LVAKRLERLAGGEIPSVRIISDNSRYSPYDRSGEEIRIIGRIVW 215 >gi|84515591|ref|ZP_01002953.1| LexA repressor [Loktanella vestfoldensis SKA53] gi|84510874|gb|EAQ07329.1| LexA repressor [Loktanella vestfoldensis SKA53] Length = 227 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 4/222 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + + I +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLAFIHTRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + +K GS G G + Sbjct: 61 ARALEILKLPDSMMGSGFQPRVIAGDKPASIPTAALPVEGGSMSLPVMGRIAAGVPIEAI 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + SM GD++++ N GD ++ Sbjct: 121 SEVSHHVHVPQSMLGKGEHYALEVKGDSMIEAGINDGDVVVIRETSVANNGDIVVALVEG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R G +I L + N Y ++ R++ Sbjct: 181 QEATLKRF-RRTGSAIALEAANPAYETRVFRDDQVKVQGRLV 221 >gi|326386994|ref|ZP_08208604.1| putative phage repressor [Novosphingobium nitrogenifigens DSM 19370] gi|326208175|gb|EGD58982.1| putative phage repressor [Novosphingobium nitrogenifigens DSM 19370] Length = 250 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 67/222 (30%), Gaps = 13/222 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL----AATN 66 + +A ++ S L+ G + + R G + ++ + Sbjct: 25 ARLVALARERGVSLSALSGMIGRNAAYLQQFVRKGSPRKLEENDRRTLAMFFGVDESELG 84 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE---- 122 + + S GR + P T+ + E Sbjct: 85 APAANEVAVVQSGGRLAFARNGSARSASRPVEAEWVDIPRLALGASAGPGTLALDEAESG 144 Query: 123 ----IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + Q + + SM P GD ++++ + + +++ Sbjct: 145 RLRFSQRWLRTLGLDPGQLSVIEVAGDSMEPTLHDGDEILVDRSPRPWRDGIHVVRID-E 203 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 ++ K L + +I +MS N YP D+ I R++W Sbjct: 204 VLLVKRLETGPAGTIRVMSDNPAYPRIERAYEDVAIIGRVVW 245 >gi|315656844|ref|ZP_07909731.1| LexA repressor [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492799|gb|EFU82403.1| LexA repressor [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 227 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 14/227 (6%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53 M+ + +++ + R++++ PS LA GL S K + + R P Sbjct: 1 MSDLTKRQQEVLTTLYRLSQKLAYPPSVRELAEAMGLSSPSSVKHHLDVLTQKGYLRRAP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +T + + + G + IP+ + + G G Sbjct: 61 NTPRALEFVKLP--EGFETPSPDPVSGASQSATITTIPVGIADTAVATPVPLVGQIAAGA 118 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + E + + + SM GD +++ + G+ + Sbjct: 119 PITAEEMVEDTFALPRRFTGSGELFMLTVKGDSMQEGGILDGDWVVVRHQNEARNGEIVA 178 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + L+ N Y + +++ Sbjct: 179 AMLD-GEATVKEFSR-ADGHVWLLPHNENYAPI--PGDTATILGKVV 221 >gi|157834973|ref|YP_001469130.1| c repressor [Phage MP22] gi|117373087|gb|ABH09825.1| c repressor [Pseudomonas phage MP22] Length = 209 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 10/201 (4%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + S LAR AG+ + + G P+ + + A ++ L+ S Sbjct: 10 SASALARNAGISQGGLQRYLKGG------EPTRRVLISLAKAAGVSLGWLMTGEGSKKPE 63 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 ++ +Y P + G + G T + R + T+ + + Sbjct: 64 EQEATGSDQYVYVPLYDARVSAGHGSWSEGAHVLT-QLAFTRYSLSKKGLEPTRMSAVRV 122 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM PL GD ++++ ++ + + + + AK L + SI ++S N Y Sbjct: 123 GGDSMEPLLSDGDAVVIDHDLRTVRDEAIYVIRVGDQLYAKRLQRQFDGSIAIISENKAY 182 Query: 203 PVDTVEMS---DIEWIARILW 220 V D++ I R++W Sbjct: 183 KDMVVPKDQLSDLDIIGRVVW 203 >gi|323174633|gb|EFZ60254.1| repressor protein C2 [Escherichia coli LT-68] Length = 240 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 19/226 (8%) Query: 5 SHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 SH++ + E + ++ LT LA+KAG+ + +K+++ + + +++ Sbjct: 16 SHERRRKMKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTL 71 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 FK+ AA + L + G+ E K P S + + Sbjct: 72 FKVAAALQCSPQWLQNGDEK-GKYWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYN 130 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIK 174 + H+ YA + + + SM + +G +++N +V G ++ + Sbjct: 131 MYDQDNWRHSVKYAGE-RGFWLEVHGDSMTSPIGITFPEGMSILVNPDKEVFSGCYVIAR 189 Query: 175 PR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + T + K IS G++ L LN YP+ ++ +D E + ++ Sbjct: 190 KKSTNEATFKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 233 >gi|298346690|ref|YP_003719377.1| repressor lexA [Mobiluncus curtisii ATCC 43063] gi|304389601|ref|ZP_07371563.1| repressor LexA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236751|gb|ADI67883.1| repressor lexA [Mobiluncus curtisii ATCC 43063] gi|304327154|gb|EFL94390.1| repressor LexA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 227 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 14/227 (6%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53 M+ + +++ + R++++ PS LA GL S K + + R P Sbjct: 1 MSDLTKRQQEVLTTLYRLSQKLAYPPSVRELAEAMGLSSPSSVKHHLDVLTQKGYLRRAP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +T + + + G + IP+ + + G G Sbjct: 61 NTPRALEFVKLP--EGFEAPSPDPVSGASQSATITTIPVGIADTAVATPVPLVGQIAAGA 118 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + E + + + SM GD +++ + G+ + Sbjct: 119 PITAEEMVEDTFALPRRFTGSGELFMLTVKGDSMQEGGILDGDWVVVRHQNEARNGEIVA 178 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + L+ N Y + +++ Sbjct: 179 AMLD-GEATVKEFSR-ADGHVWLLPHNENYAPI--PGDTATILGKVV 221 >gi|258541731|ref|YP_003187164.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632809|dbj|BAH98784.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256635866|dbj|BAI01835.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256638921|dbj|BAI04883.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256641975|dbj|BAI07930.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256645030|dbj|BAI10978.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256648085|dbj|BAI14026.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256651138|dbj|BAI17072.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654129|dbj|BAI20056.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] Length = 214 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 15/220 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++IW A+D +A+ LTPSGLAR AGLD T+FN S+R +G RWP+ S+ + L Sbjct: 5 ERIWHALDTLAQERGLTPSGLARAAGLDATTFNPSRRHTGQGVWRWPALPSLLRALDVLR 64 Query: 67 ETICQLLDLPFSDGRT---TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ Q + + + L G D P G W Sbjct: 65 VSLAQFEGHIWGYEQPDGVEAPAPCFMRSLPLSWLKQEGVLDRAGLPAGGLWEQEET--- 121 Query: 124 RSPHNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 +++ + + M P+ R G L++ A+ DR+++ V Sbjct: 122 ------FFSLPSSSAYMLRVDTEGMEPILRLGCSLVVQPALYPRGADRVVLIRPGQAPVV 175 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 +L + +I + PV W+ RI+ S Sbjct: 176 GILQEKPVLAIQPFGRSALQPVPQAAAG--VWLHRIVLIS 213 >gi|241759778|ref|ZP_04757878.1| peptidase, S24 family [Neisseria flavescens SK114] gi|241319786|gb|EER56182.1| peptidase, S24 family [Neisseria flavescens SK114] Length = 238 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 25/241 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGR---------- 49 MT H+ + + +A+ L P+ +A + + + + GI + Sbjct: 1 MTM--HET-TDRLFEIAKEQGVLKPADIAERLNISQQALKNWESRGIAAKALPEVARVFG 57 Query: 50 --NRWPSTESIFK-----ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 W T + I + + ++ + Y S G Sbjct: 58 VSETWLRTGEGSRTVPVLIDPGLPHEVKDIHSPMMWSSNDPLPEDDYTFVPYLKESCFKG 117 Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 + P N + +P +S SM + + +++ Sbjct: 118 GTGAYEIPDYNGY---RLPFGKSTLKRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTG 174 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWA 221 ++ + G K LI + G ++ + S N YP +T + + I R+ W Sbjct: 175 ETAIRDGKIYAFAQDGMFRVKYLIRQPGGNVLIRSHNSGFYPDETAPLDSLTVIGRVFWW 234 Query: 222 S 222 S Sbjct: 235 S 235 >gi|163854079|ref|YP_001642122.1| LexA repressor [Methylobacterium extorquens PA1] gi|218533024|ref|YP_002423840.1| LexA repressor [Methylobacterium chloromethanicum CM4] gi|163665684|gb|ABY33051.1| LexA repressor [Methylobacterium extorquens PA1] gi|218525327|gb|ACK85912.1| SOS-response transcriptional repressor, LexA [Methylobacterium chloromethanicum CM4] Length = 240 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ + I + + + PS K LD S + R + R + Sbjct: 1 MLTRKQLELLQFIQQRMQESGVPPSFDEMKDALDLKSKSGIHRLIMALEERGFLRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----------- 107 + + S+ R E L P + + Sbjct: 61 ARAIEILRMPDMPAAKPASSEPRRFTPSVVEGGLSAKPAAPKPPMLQAHDGKGQSVMVPV 120 Query: 108 --VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164 G + + + + + + + SM GD+++++ Sbjct: 121 MGRIAAGVPISAIESQSHSISMSPDFLSGGEHYALEVRGDSMIEAGILDGDLVVIHKQET 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K L R G SI L + N Y + + +++ Sbjct: 181 ANNGDIIVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGKLV 234 >gi|331019765|gb|EGH99821.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 238 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 22/230 (9%) Query: 11 EAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + L+ A + GLD + ++ + + +T KI + Sbjct: 6 QRISALRAAMAGLSQKDFANQHGLDASYLSQLLNGHRKLGEKAAATLE-EKINLHPGSLV 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-- 127 + I S V PE Sbjct: 65 NPQVMSDSELTEAVMLDTPPIDSRTLMQSLGFITIPHLNVAASMGSGNVP-PESHIEVIR 123 Query: 128 ------------NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 ++ SM +R GD L+++ I D + + Sbjct: 124 DITVHLDWLKTQGLAFSRIENLAIITGDGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFT 183 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI--LW 220 GD+ K L G S+ ++S N YP +E +D + AR+ +W Sbjct: 184 LDGDLYIKRLQRMTGGSLRMISDNPLYPAIIIEGADLTKVHIQARVLLVW 233 >gi|188584409|ref|YP_001927854.1| LexA repressor [Methylobacterium populi BJ001] gi|179347907|gb|ACB83319.1| transcriptional repressor, LexA family [Methylobacterium populi BJ001] Length = 240 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + ++ + I + + + PS K LD S + R + R P+ Sbjct: 1 MLTRKQLELLQFIQQRMQESGVPPSFDEMKDALDLKSKSGIHRLIMALEERGFLRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRT----------TEKKEKEIPLLYFPPSGSGGFFD 105 +IL + + + + + + S Sbjct: 61 ARAIEILRMPDLPAAKPVPSEPRRFTPSVVEGGLSGKPAAPKPPMLQAHDGNGQSVMVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164 G G + + + + + + + SM GD+++++ Sbjct: 121 MGRIAAGTPISAIESQSHTISMSPDFLTGGEHYALEVRGDSMIEAGILDGDLVVIHKQDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K L R G SI L + N Y + + +++ Sbjct: 181 ANNGDIIVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGKLV 234 >gi|59712644|ref|YP_205420.1| Cro/Cl family transcriptional regulator [Vibrio fischeri ES114] gi|59480745|gb|AAW86532.1| transcriptional repressor, Cro/CI family [Vibrio fischeri ES114] Length = 215 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 82/217 (37%), Gaps = 13/217 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + LT S +A+ +G+ +S ++ + P ES+ + + Sbjct: 2 DTFGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNK-----PKGESLMALASFLK 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + LL S K+E+E ++ G + G WN + + ++ Sbjct: 57 CDVNWLLTGQGS--PEPAKQEQETTVVSVALKPQGSYPVISWVQAG-GWNDIHLTDLHDA 113 Query: 127 HNGIYAIQ--TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAK 183 ++ K SM P++R+G+++ ++ ++ G ++ + K Sbjct: 114 DYYPCPVRCSKNTFLLKVVGKSMNPVFREGELIFVDPDVEAVNGKYVVARLDDENQATFK 173 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 LI G+ L + N +P + ++ + + ++ Sbjct: 174 QLIIEDGKKF-LQAANPDWPTPIIPINGNCTIVGVVI 209 >gi|257468732|ref|ZP_05632826.1| repressor LexA [Fusobacterium ulcerans ATCC 49185] gi|317062987|ref|ZP_07927472.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313688663|gb|EFS25498.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 229 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 15/220 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + E + + LA+ G+ + +N +R + + + IL +++ Sbjct: 6 FLRFKREELGYSQNKLAKTIGITQSYYNTIERGEVRNPPSEEILDKMIAILQLSDKEAAD 65 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----------GVFPTGNKWNTVGV 120 L + E+ L + G T Sbjct: 66 FKYLAAIEKTPPLILEELKRLEKQKDAPPKADIYELKNFDNYIPLYSRISAGIGVFTEEG 125 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P GI I + SM P + I++ ++V G+ G+ Sbjct: 126 PVDFISIPGIRNID-TLFAVNVKGDSMEPTIKNSSIILCRKGVEVRNGEIGAFIVN-GES 183 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 K L I L+S N Y + + I ++L Sbjct: 184 YVKRL-KITANYIALISDNPNYQPIYIGPGEEFSVIGKVL 222 >gi|324115562|gb|EGC09501.1| helix-turn-helix protein [Escherichia coli E1167] Length = 228 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 16/228 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + E+ ++ + LA K GL S K + + + I K+L + Sbjct: 2 KTLAERLKIGREKAGMSQAQLAEKIGLSQQSVAKIENGET---LQPRKIKEIAKVLGVSQ 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-----VP 121 + + ++ S K+ + L G V P Sbjct: 59 KWLQLGIEDNASIPDLVVKEAESTALDPDIFVNIPVLDVELSAGNGCLAEIVESAIDWFP 118 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179 R+ + K S+LP+ GD++ ++ + + GD L Sbjct: 119 LRRADLRKSGVCASNAKIVKIWGNSLLPVLNNGDLVAVDISQTVPIRDGD-LYAVRDGVL 177 Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222 + K+LI+ + L S N YP + + D I I R+ W+S Sbjct: 178 LRVKILINLPDGGLILRSFNKDEYPDEILTFEDRRARIHVIGRVFWSS 225 >gi|296160137|ref|ZP_06842956.1| putative phage repressor [Burkholderia sp. Ch1-1] gi|295889611|gb|EFG69410.1| putative phage repressor [Burkholderia sp. Ch1-1] Length = 222 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 26/223 (11%) Query: 8 KIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I + + + LA AG+ + N+ G+ + E I Sbjct: 2 NLAERIQTVLDEVDGIDQVKLAEAAGVTKGTVNQWL----TGQIKSIKLEYAVGIQERFG 57 Query: 67 ETICQ-----------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + K IP+L G GF+ +P G+ Sbjct: 58 YNPVWLVMGKGSKKVPGIHHEDAFNPIPFPPGKRIPVLGMAQLGDNGFWAEVEYPVGHGE 117 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + P + SMLP + G+ +++ V GD +L+K Sbjct: 118 GYLDFPSR----------DRDAYGIRCVGDSMLPRIKDGEFVVIEPNHPVENGDEVLVKA 167 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + G ++ K+L+ +R LMS+N + +E IE + + Sbjct: 168 KDGRVMIKILLYQRAGRTHLMSVNTEHAPLAIETEKIERLHYV 210 >gi|150021357|ref|YP_001306711.1| putative prophage repressor [Thermosipho melanesiensis BI429] gi|149793878|gb|ABR31326.1| putative prophage repressor [Thermosipho melanesiensis BI429] Length = 206 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 60/213 (28%), Gaps = 22/213 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + + LT L + + + + PS E + + + Sbjct: 2 NIGEKIKFLRLQKGLTQEQLGNIINVGQRTISAYESGKAT-----PSVEVLKSLADYFDV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L K + + GN P Sbjct: 57 AVDYFLSDKPGQTEVEFVDIKFKKVPLYS----------APVSAGNG----AFPNDIYVL 102 Query: 128 NGIYAIQTQ-DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 I AI D K SM P+ G +L + GD ++ G I K + Sbjct: 103 GEINAINHDVDFAVKVVGNSMEPIAPDGSVLFVKKQNYAFNGDMIVCTYD-GWIYVKWYV 161 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + I L+S N Y VE D I ++ Sbjct: 162 KQ-NDKILLLSENPTYTPIVVEPKDRFIIHGVV 193 >gi|330999679|ref|ZP_08323388.1| peptidase S24-like protein [Parasutterella excrementihominis YIT 11859] gi|329574185|gb|EGG55761.1| peptidase S24-like protein [Parasutterella excrementihominis YIT 11859] Length = 224 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 12/221 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + L S +AR + P S + G+++ + + K+ Sbjct: 2 KTLAERLTLALSDSGLKKSDIARLCSISPASVSDWF----TGKSKSIKSIYLPKVAKLLG 57 Query: 67 ETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + L E+ + + F + + + Sbjct: 58 VSSTWLATGNGPMKSPNVLVTEEVCDDDDWVEIPEYKIRFAAGFEQNSTLEELASEYKAA 117 Query: 126 PHNGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + R K + SM PL D+++++ + R+ + Sbjct: 118 YRRSWFQRKNINPEDCKRFKVKGDSMEPLLLDHDVVLVDCSKTEIIDGRIYAFVFGNALR 177 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 K L + SI + S N + +T+ + ++ I ++ Sbjct: 178 VKRLYRKIDGSIVVHSENPNFEDETIKPVDTEQVQIIGEVI 218 >gi|260426266|ref|ZP_05780245.1| LexA repressor [Citreicella sp. SE45] gi|260420758|gb|EEX14009.1| LexA repressor [Citreicella sp. SE45] Length = 231 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 14/229 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + + I++ +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLDFINKRMQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + + P+ G G Sbjct: 61 ARAIEIVKLPESLGGRPAGFAPKVIDGDIPDSRPAAARPVATIEAMELQVL---GRIAAG 117 Query: 113 NKWNTV-GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 ++ P + G+ + + + + SM GD++I+ GD Sbjct: 118 EPIQSIADNPPGIAVPTGMLSANARHYALEVRGDSMIEAGINDGDVVIIRETSSAENGDI 177 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + + K + G +I L + N Y + + ++ R++ Sbjct: 178 VVAQIEGYEATLKRFRRK-GDAIVLEAANPAYEPRVLPVGSVKVQGRLV 225 >gi|229008902|ref|ZP_04166256.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] gi|228752339|gb|EEM02013.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] Length = 218 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 17/219 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ ++HNL+ L AG+ + + ++ + P I KI Sbjct: 3 IGKNIKKLRDKHNLSQKELGEIAGVSDKAVSTWEKG-----LKEPRMGVIQKIADHFGIL 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +++ S + EI P G V +P + + Sbjct: 58 KSDIIEDQDSKVTHIRPNQPEIKNNCKPVPLLGAIAAGTPLEMVAVEEWVNIPVEITDCH 117 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + SM + + +++ I++ GD + D K Sbjct: 118 P------HAFLLRVVGDSMNKVVPPNALALIDPDIEIRNGDVAAVAVNGFDATLKRFYKF 171 Query: 189 RGR-SIDLMSLNCCYPVDTVEM-----SDIEWIARILWA 221 + +++ S N + + + + +++W Sbjct: 172 QDGVTLEPESYNPEHKTQFYDSKTQEFTPVVVKGKLVWY 210 >gi|240141533|ref|YP_002966013.1| SOS response transcriptional repressor, lexA [Methylobacterium extorquens AM1] gi|254564050|ref|YP_003071145.1| SOS response transcriptional repressor, lexA [Methylobacterium extorquens DM4] gi|240011510|gb|ACS42736.1| SOS response transcriptional repressor, lexA [Methylobacterium extorquens AM1] gi|254271328|emb|CAX27340.1| SOS response transcriptional repressor, lexA [Methylobacterium extorquens DM4] Length = 258 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ + I + + + PS K LD S + R + R + Sbjct: 19 MLTRKQLELLQFIQQRMQESGVPPSFDEMKDALDLKSKSGIHRLIMALEERGFLRRLPNR 78 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----------- 107 + + S+ R E L P + + Sbjct: 79 ARAIEILRMPDMPAAKPASSEPRRFTPSVVEGGLSAKPAAPKPPMLQAHDGKGQSVMVPV 138 Query: 108 --VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164 G + + + + + + + SM GD+++++ Sbjct: 139 MGRIAAGVPISAIESQSHSISMSPDFLSGGEHYALEVRGDSMIEAGILDGDLVVIHKQET 198 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K L R G SI L + N Y + + +++ Sbjct: 199 ANNGDIIVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGKLV 252 >gi|293433433|ref|ZP_06661861.1| transcriptional regulator [Escherichia coli B088] gi|291324252|gb|EFE63674.1| transcriptional regulator [Escherichia coli B088] Length = 228 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 16/228 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + E+ ++ + LA K GL S K + + + I K+L + Sbjct: 2 KTLAERLKIGREKAGMSQAQLAEKIGLSQQSVAKIENGET---LQPRKIKEIAKVLGVSQ 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-----VP 121 + + ++ S K+ + L G V P Sbjct: 59 KWLQLGIEDNASIPDLVVKEAESTALDPDIFVNIPVLDVELSAGNGCLAEIVESAIDWFP 118 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179 R+ + + S+LP+ GD++ ++ + + GD L Sbjct: 119 LRRADLRKSGVCASNAKIVQIWGNSLLPVLNNGDLVAVDISQTVPIRDGD-LYAVRDGVL 177 Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222 + K+LI+ + L S N YP + + D I I R+ W+S Sbjct: 178 LRVKILINLPDGGLILRSFNKDEYPDEILTFEDRRARIHVIGRVFWSS 225 >gi|126731368|ref|ZP_01747175.1| LexA repressor [Sagittula stellata E-37] gi|126708279|gb|EBA07338.1| LexA repressor [Sagittula stellata E-37] Length = 231 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 14/229 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + + I++ R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLDFINKRMARDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + R + + G G Sbjct: 61 ARAIEIVKLPESLGGAPAGFSPRVIEGDRPDNTPGRATEINTL---DVTELPIMGRIAAG 117 Query: 113 NKWNTV-GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 ++ P + + Q + + + SM GD++++ GD Sbjct: 118 VPIESINDEPPGIAVPGMMLKGQGRHYALEVRGDSMIEAGINDGDVVVIRETSDAADGDI 177 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + + K + G I L + N Y + D+ R++ Sbjct: 178 VVAQIEGYEATLKRFRRK-GEMIVLEAANPAYEPRVLPRGDVNVQGRLV 225 >gi|254710961|ref|ZP_05172772.1| Peptidase family S24 [Brucella pinnipedialis B2/94] gi|256029343|ref|ZP_05442957.1| Peptidase family S24 [Brucella pinnipedialis M292/94/1] Length = 142 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 77/151 (50%), Gaps = 9/151 (5%) Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 +D + IPLL +G+GG+FD FP G W+ V P Sbjct: 1 MDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTGEG----- 55 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SMLPLYR GD LI+ V GDR++++ R G+++AK+L + R+ Sbjct: 56 ----VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRT 111 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 I+L SLN +P E DIEWIARILWASQ Sbjct: 112 IELHSLNPEHPNRIFESKDIEWIARILWASQ 142 >gi|284006836|emb|CBA72100.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 230 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 83/224 (37%), Gaps = 24/224 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + + ++ I + + ++ + LAR+ + + ++ G + P + Sbjct: 7 MITTT-DRLIRNIQVLMKERDIENVTELARRTRIPQPTMHRLI----SGEIKEPKYALLK 61 Query: 60 KILAATNETICQLLDLP--------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ + N + +L++ + K IP+L GS G+++ +P Sbjct: 62 QVASYFNIPVSELVEKDIGSSKLSSNVLKAEEIFQFKAIPVLGNAQLGSEGYWEELEYPI 121 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G + P K SM P + G+ +++ GD + Sbjct: 122 GYGDGYINWPTK----------DPDAFALKCIGDSMKPRIKNGEYVVIEPNHTYLPGDEV 171 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 I G+ + K + R I ++S+N +P +++ IE I Sbjct: 172 FITTSEGEAMVKTFLYERDGVIVVISINENHPPLHFDINRIEKI 215 >gi|221196208|ref|ZP_03569255.1| phage repressor [Burkholderia multivorans CGD2M] gi|221202882|ref|ZP_03575901.1| phage repressor [Burkholderia multivorans CGD2] gi|221176816|gb|EEE09244.1| phage repressor [Burkholderia multivorans CGD2] gi|221182762|gb|EEE15162.1| phage repressor [Burkholderia multivorans CGD2M] Length = 230 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 28/220 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + LA AG+ + ++ +G+ + E I Sbjct: 14 DRIRAVLSETQAEQVELAEAAGVTKGTVSQWL----DGKIKSIKLEYAVGIQKRYGYNPV 69 Query: 71 Q---------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + +++ + + +PL+ +G FP G + + Sbjct: 70 WLVMGEGEKKMGTPGYANVAPAQVGSRRVPLISSVQAGRMTEAVD-PFPPGGAFEYL--- 125 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + SM P + GD +I++ AIQ GD ++ K + Sbjct: 126 ------LTDLDLSDYAFALEIEGLSMAPDFNPGDRIIIDPAIQPRPGDFVVAKNGREEAT 179 Query: 182 AKVLISRRGR-----SIDLMSLNCCYPVDTVEMSDIEWIA 216 K +R + +L+ LN YP + E + I Sbjct: 180 FKKYRARGVGADGREAFELIPLNPDYPTISSEHEQVRIIG 219 >gi|85058914|ref|YP_454616.1| hypothetical protein SG0936 [Sodalis glossinidius str. 'morsitans'] gi|84779434|dbj|BAE74211.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans'] Length = 239 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 24/233 (10%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + +AI L+ + A K G ++ ++ + R + KI Sbjct: 12 RDQQLKAIKA-----GLSKADFAEKCGTSASTISQIL---GDKAGRNLGDDLARKIEKNL 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG---------SGGFFDSGVFPTGNKWN 116 L + +E E +I P F G+ Sbjct: 64 GLKHGWLDLQHHETQKNSEVHEAQIIGGIIPWDSKTSLYGDEVEVPFLKEVKISAGSGSL 123 Query: 117 TVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + +S + + SM P+ G + ++ ++ + Sbjct: 124 FQEDHNGYKLRFAKSTLRRLNVQPENAVCVEVIGNSMEPVLPDGSTVGVDLGNKIIKDGK 183 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 + + KVL I + S N Y + + +++ I ++ W+S Sbjct: 184 MYAIDYGDFLRVKVLYLMPKGKIRIRSYNQDEYDDEECDATEVTVIGKVFWSS 236 >gi|254490244|ref|ZP_05103434.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490560|ref|ZP_05103746.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490688|ref|ZP_05103873.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490854|ref|ZP_05104037.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490891|ref|ZP_05104074.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490935|ref|ZP_05104117.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254491345|ref|ZP_05104525.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254491994|ref|ZP_05105172.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254492163|ref|ZP_05105338.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254492671|ref|ZP_05105842.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|224462192|gb|EEF78470.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224462715|gb|EEF78989.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224462809|gb|EEF79080.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224463474|gb|EEF79743.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224463844|gb|EEF80111.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464026|gb|EEF80292.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464063|gb|EEF80329.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464144|gb|EEF80408.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464304|gb|EEF80567.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464591|gb|EEF80850.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] Length = 272 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 70/267 (26%), Gaps = 59/267 (22%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA---- 64 I I +R LT +A G+ S K ++ R P + KIL Sbjct: 7 IGGRILEERKRLRLTQQDVADFVGITRQSQAKYEKGE-----RSPDAIYLEKILGLGFNS 61 Query: 65 ----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFP------------------------ 96 T D ++ + Sbjct: 62 YYVLTGNETFPTRSHLDVDDNSSSTHRNSNESETYEKRDRKSKVGQVDPTSNEEVGSSIK 121 Query: 97 ----------PSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIY----AIQTQDTR 139 + + GN + + IY + Sbjct: 122 DYSAGTGSIMETFAHIPLFDVKASAGNGYVIHEEEETDALIFKKEWIYNELHSSPANLYL 181 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 + SM P R GD+++++ V D + + ++ K L + + + S N Sbjct: 182 IYVEGESMEPALRPGDVILVDHTDNVAKRDGIYVIRMGESLLVKRLQRLPSQRLKVTSDN 241 Query: 200 CCYPVDTVEMS-----DIEWIARILWA 221 Y + + ++ I R++W+ Sbjct: 242 PAYEPFEISLDFDLQNELSIIGRVVWS 268 >gi|183599591|ref|ZP_02961084.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] gi|188021839|gb|EDU59879.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] Length = 207 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 19/210 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + NLT + LA KAG+ S + + + R + I K L ++ Sbjct: 3 LASRIRQRRQELNLTQTELAEKAGISQQSIESIENGRTK-KPR--NIIEIAKAL----QS 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L S +E + IPLL + +G + GN + + V + S Sbjct: 56 HPEWLLNGKSIMPISEVNSRRIPLLSYVQAGLFKDANPITDYEGN-FEYILVDDDIS--- 111 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS- 187 + + SM P +++GDI+++++ I N G+ + K K Sbjct: 112 ------ANAFALRVEGDSMTPEFKEGDIVVIDTEIWPNPGEFVFAKNGGNQGTFKKYRPT 165 Query: 188 -RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +L+ LN YP I I Sbjct: 166 GIGTGEFELVPLNPDYPTLNSHDYQISLIG 195 >gi|32266247|ref|NP_860279.1| hypothetical protein HH0748 [Helicobacter hepaticus ATCC 51449] gi|32262297|gb|AAP77345.1| hypothetical protein HH_0748 [Helicobacter hepaticus ATCC 51449] Length = 228 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 64/226 (28%), Gaps = 21/226 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + H +T A + G+ + + R+ + I Sbjct: 2 IGSKLVALRNEHQMTQKDFAERTGISYGTLQAYEYGTQS--PRYDYLTKVSDIFNVPMIF 59 Query: 69 ICQLLDLPFSDGRTT--------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + ++ + + P + +D V G+ Sbjct: 60 FLDDDTSLGNSYTNPKGFVSDSLDVRKSDSLVSNNPSTIQIPIYDDVVASAGSGAINDEY 119 Query: 121 PEIRSPHNGIY-------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 P + + + + + SM P + L++ ++ G ++ Sbjct: 120 PTQSVGIDKGFLRTHFGLSSFLGLSIITAKGDSMSPTIPENCQLLVQKSV-PKEGQICVV 178 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + ++ K L L+S N Y +E + + + ++ Sbjct: 179 RID-DELYVKRLQKLP--KYRLISDNKSYENIELEGREYDIVGVVV 221 >gi|284008333|emb|CBA74709.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 230 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 16/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H++I +A R+A++ +T + LA K + P S + + +NR + Sbjct: 1 MKTM-HERIKQA--RLAKK--MTQAELAEKLSVTPQSVQQWETSTEPKKNRLMKIADVLD 55 Query: 61 ILAA---TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I E + L + E L F+ S G+ N Sbjct: 56 INVNWLLFGEKKNKDGRLKNKMNFREISEWDESTPLEDDEV-EIPFYKSIELAAGSGCNE 114 Query: 118 ------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + RS SM P+ G + +N + Sbjct: 115 NKDYNGFKLRYSRSTLRRYGIPSKSVYAFTVHGNSMEPVIPNGATVFVNCCDNSIVDGGI 174 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 + K+L+ + G+ + + S N YP + ++ ++ I R+ AS Sbjct: 175 YFIEQDDLFRIKILLRQPGKKVIIRSFNSIEYPDEIADLDTVKVIGRVFNAS 226 >gi|259418887|ref|ZP_05742804.1| LexA repressor [Silicibacter sp. TrichCH4B] gi|259345109|gb|EEW56963.1| LexA repressor [Silicibacter sp. TrichCH4B] Length = 232 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 72/229 (31%), Gaps = 13/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + ++ E I + ++ + PS K LD S + R R Sbjct: 1 MLTKKQLQLLEFIHKRLQKDGVPPSFDEMKTALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + ++ + + G+ + E+ + +G+ G G Sbjct: 61 ARAIEVIRLPDSLGGNPDSFQPKVIAGGKDQNAPKAELKPV--ADNGATELAVMGRIAAG 118 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + + Q + + SM+ GD++++ + GD Sbjct: 119 VPIEAISQASAHVAVPNAMLSSAGQHYALEVRGDSMIDAGINDGDVVVIRETDAADNGDI 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + GR I+L + N YP + ++ R++ Sbjct: 179 VVALVEGHEATLKRFERK-GRMIELHAANPAYPTRSYSEDQVKVQGRLV 226 >gi|47605801|sp|P61613|LEXA_RHOCA RecName: Full=LexA repressor gi|33340117|gb|AAQ14546.1|AF308861_1 LexA [Rhodobacter capsulatus] Length = 238 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 23/236 (9%) Query: 3 SFSHKKI--WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----- 55 +HK++ + I + R + PS K LD S + R R Sbjct: 1 MLTHKQLELLDFIQKRMARDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRMAHR 60 Query: 56 ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 ES+ + A Q P + + + + + Sbjct: 61 ARALEIVKLPESMERAAEAERGLQTQPAFTPMLIAGSRTEPPRGALP---VAAAALDIPM 117 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163 G G + G + + + + + SM+ GDI+++ S Sbjct: 118 MGRIAAGVPIEAIAEVAHHVTVPGAMLSGRGEHYALEVKGDSMIQAGINDGDIVVIRSQP 177 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K R G I L + N Y + ++ R++ Sbjct: 178 TAENGDIVVALVEDLEATLKRYYRR-GGMIALEAANPAYETRLLREDQVKVQGRLV 232 >gi|262277265|ref|ZP_06055058.1| repressor LexA [alpha proteobacterium HIMB114] gi|262224368|gb|EEY74827.1| repressor LexA [alpha proteobacterium HIMB114] Length = 226 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 61/228 (26%), Gaps = 17/228 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--------W 52 M + K + I+ + ++PS + L+ S + R R Sbjct: 1 MLTKKQKNLLIYINEKLKNDGVSPSYDEMRQSLNLKSKSGIHRLISALEERGFVKRLAHK 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ P K K+ + P + Sbjct: 61 ARALEVVKLPENAGVKDLYNNFTPSVISG-GLDKIKKEKEKKYIPVVGKIAAGLPIEAIE 119 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171 + + P S N + K + SM+ GD +I+ G + Sbjct: 120 DSSENIPYPPNLSDKNDEF------YGLKVEGDSMINAGINDGDTVIIKKTNTAENGKIV 173 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K L + SI L S N Y ++ ++ Sbjct: 174 VALIDDHEATLKRLRKKTN-SIALESANPAYETRIFNPERVKIQGILV 220 >gi|312134838|ref|YP_004002176.1| XRE family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311774889|gb|ADQ04376.1| transcriptional regulator, XRE family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 11/205 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + E+ L +A+K + + + + R PS E + K N + Sbjct: 17 RIRELREKQGLQQKDVAKKLNISNQALSNYELG-----KRMPSLEMVKKFADFFNVSTDY 71 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-----PTGNKWNTVGVPEIRSP 126 L+ L S + + L P G + Sbjct: 72 LMGLTNSPNPNQDDDVVKKFLENNPDVRPVGKMIPIPIIGTVRAGSDGSLACEEYLGSEL 131 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + SM P +GD++++ V G+ ++ + V K +I Sbjct: 132 VEVDTVKDGEYFFLRVKGDSMYPEIFEGDLVLVRKQPDVESGELAVVIVNGDEGVVKKVI 191 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD 211 + +I L S+N Y + Sbjct: 192 KKEN-AIILQSVNPKYEPIVITEGQ 215 >gi|114764299|ref|ZP_01443527.1| LexA repressor [Pelagibaca bermudensis HTCC2601] gi|114543247|gb|EAU46264.1| LexA repressor [Roseovarius sp. HTCC2601] Length = 231 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + + I++ +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLDFINKRLQRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + R + K P+ + + G G Sbjct: 61 ARAIEIVKLPESLGGKPAGFTPQVIDGDRPDSRPAKAQPV---SNAEALELPLLGRIAAG 117 Query: 113 NKWNTV-GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 ++ P + + + + + SM GD++I+ + GD Sbjct: 118 EPIQSIADNPPNIAVPGAMLSSNAHHYALEVKGDSMIEAGIHDGDVVIIRETSSASNGDI 177 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + + K + G +I L + N Y + + ++ R++ Sbjct: 178 VVAQIEGYEATLKRFRRQ-GDTIVLEAENAAYEPRVLPLGAVKVQGRLV 225 >gi|156933191|ref|YP_001437107.1| hypothetical protein ESA_01002 [Cronobacter sakazakii ATCC BAA-894] gi|156531445|gb|ABU76271.1| hypothetical protein ESA_01002 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 19/228 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + E+ L+ LA + GL S K + E P + Sbjct: 4 LAERLKKAREKAGLSQLQLAEQVGLTQQSIAKIENGVTE----QPRKIKQLALALGVTAN 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-------GVP 121 Q D+ + + ++ P + GN P Sbjct: 60 WLQYGDIDANGSYSEMIVKEWESTSADPDLFTEIPILDIELSAGNGCEAEIVESELSTYP 119 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179 R + +S+ P+ GD + ++ + GD L Sbjct: 120 LRRDELRRAGVSASSARIVNILGSSLYPVLTNGDKVAVDLSQTSPIRDGD-LYALRDGVL 178 Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222 + K+LI+R + L S N YP + + + I I R+ W+S Sbjct: 179 LRVKILINRPDGGLILRSFNKDEYPDEVLTYEEKLARIHVIGRVFWSS 226 >gi|260567943|ref|ZP_05838412.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|260154608|gb|EEW89689.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 132 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 75/141 (53%), Gaps = 9/141 (6%) Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 + IPLL +G+GG+FD FP G W+ V P + Sbjct: 1 MYARPAPIPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTGEG---------VYALEV 51 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SMLPLYR GD LI+ V GDR++++ R G+++AK+L + R+I+L SLN + Sbjct: 52 SGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTIELHSLNPEH 111 Query: 203 PVDTVEMSDIEWIARILWASQ 223 P E DIEWIARILWASQ Sbjct: 112 PNRIFESKDIEWIARILWASQ 132 >gi|294677883|ref|YP_003578498.1| LexA repressor [Rhodobacter capsulatus SB 1003] gi|294476703|gb|ADE86091.1| LexA repressor [Rhodobacter capsulatus SB 1003] Length = 238 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 23/236 (9%) Query: 3 SFSHKKI--WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----- 55 +HK++ + I + R + PS K LD S + R R Sbjct: 1 MLTHKQLELLDFIQKRMARDGVPPSFDEMKDALDLRSKSGIHRLITALEARGFIRRMAHR 60 Query: 56 ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 ES+ + A Q P + + + + + Sbjct: 61 ARALEIVKLPESMERAAEAERGLQTQPAFTPTLIAGSRTEPPRGALP---VAAAALDIPM 117 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163 G G + G + + + + + SM+ GDI+++ S Sbjct: 118 MGRIAAGVPIEAIAEVAHHVTVPGAMLSGRGEHYALEVKGDSMIQAGINDGDIVVIRSQP 177 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K R G I L + N Y + ++ R++ Sbjct: 178 TAENGDIVVALVEDLEATLKRYYRR-GGMIALEAANPAYETRLLREDQVKVQGRLV 232 >gi|167746119|ref|ZP_02418246.1| hypothetical protein ANACAC_00815 [Anaerostipes caccae DSM 14662] gi|167654634|gb|EDR98763.1| hypothetical protein ANACAC_00815 [Anaerostipes caccae DSM 14662] Length = 209 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 54/224 (24%), Gaps = 28/224 (12%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M +K I I + T + + G+ T+F + R E + Sbjct: 1 MGGLGNKDIMANNIKYYMNLNGKTRNEMCEALGVKYTTFTDWVKGNT--YPRIDKIELMA 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + G + V Sbjct: 59 NYFGIEKSDLVEQRSVNRKHNAVEINVLGR-------------------VAAGIPIDAVE 99 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 A + SM P + +GD++I+ D ++ + Sbjct: 100 EIIDTEEITEDMAKTGTFFGLQIHGNSMEPKFSEGDVVIVRQQDDAETDDIVIAIVNGDE 159 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARI 218 K L I L+S N Y + ++ I + Sbjct: 160 ATCKKLKKYNDG-IVLISTNPAYEPMYFSNKEIMDKPVKIIGVV 202 >gi|256024105|ref|ZP_05437970.1| Repressor protein C2 [Escherichia sp. 4_1_40B] Length = 208 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 24/218 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + I + + L + G+ + ++ P E++ K+ N Sbjct: 2 ETVGQRIKALRRVTGTSQKELGKFCGVSDVAVGYWEKDINT-----PGGEALSKLAKFFN 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + +P++ + +G + E+ Sbjct: 57 TS-IDYILYGAEFEGKLVTNMRRVPVISWVQAGQFTECRAAEV----------FSEVDKW 105 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDI 180 + I + + SM LP +G +I++ + G ++ + T + Sbjct: 106 VDTSLKIGDNSFALEVKGDSMTNPNGLPTIPEGATVIVDPDAEPRHGKIVIARLDGTNEA 165 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ + L+ LN YP + + + I + Sbjct: 166 TVKKLVIDGPQKF-LVPLNPRYPNIPINGNCL-IIGVV 201 >gi|197285395|ref|YP_002151267.1| regulatory protein [Proteus mirabilis HI4320] gi|227355829|ref|ZP_03840222.1| repressor of rdgA and rdgB [Proteus mirabilis ATCC 29906] gi|194682882|emb|CAR43223.1| regulatory protein [Proteus mirabilis HI4320] gi|227164148|gb|EEI49045.1| repressor of rdgA and rdgB [Proteus mirabilis ATCC 29906] Length = 230 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 16/227 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + LT S LA AG S + + + R + K L Sbjct: 3 IAKRTKDKRIALGLTQSELATLAGTTQQSIEQLESGKTK---RPRFLPELAKALNCELSW 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKWNTVG--- 119 + + + + E + +F S G+ T Sbjct: 60 LLEGDNKQTHASEIPPQDEWHSVSEWDNDTPLNADEVEIRYFKSIELAAGDGCCTNEDHN 119 Query: 120 ---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + +S A SM P+ G + +++ + + Sbjct: 120 GYKLRFSKSTLRRYGASPQNVICFSVYGDSMSPVIPNGSTVTVDTGNTRIVDGGIYAIEQ 179 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 K+L + G + + S N +P + E+ ++ + R++ S Sbjct: 180 DSLFRIKLLYRQPGGKLIIRSYNKDEFPDEFAEIDSVKIMGRVIHWS 226 >gi|56697019|ref|YP_167381.1| LexA repressor [Ruegeria pomeroyi DSS-3] gi|71648704|sp|Q5LRH4|LEXA_SILPO RecName: Full=LexA repressor gi|56678756|gb|AAV95422.1| LexA repressor [Ruegeria pomeroyi DSS-3] Length = 231 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 12/228 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + + + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRLQADGVPPSFDEMKLALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + DG ++ + G G Sbjct: 61 ARAIEIVKLPESLGGEPTVGFQPRVIDGDRPDRPRPANAEPVTIHAVELPVM--GRIAAG 118 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171 + + G + + + + SM GD++++ + GD + Sbjct: 119 VPIEAISQVSHQVAVPGSMVGKGEHYALEVKGDSMIEAGINDGDVVVIRETSTADNGDIV 178 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K R SI L + N Y + + R++ Sbjct: 179 VALVDDSEATLKRFFRRGA-SIALEAANPAYETRVLPSDRVRVQGRLV 225 >gi|117926204|ref|YP_866821.1| phage repressor [Magnetococcus sp. MC-1] gi|117609960|gb|ABK45415.1| putative phage repressor [Magnetococcus sp. MC-1] Length = 264 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 65/245 (26%), Gaps = 27/245 (11%) Query: 3 SFSHKK----------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 + +H + + + L+ LA KAG+ +K + EG + Sbjct: 17 TLTHPQNSDTLLLMDTLGHRLKDARLALGLSQKKLADKAGVSQGLIHKLETGFYEGTGQI 76 Query: 53 PSTESIFKIL-------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 + + + + Sbjct: 77 VPIAGALDVRPEWLHSGEQPRRWGNPQYKDLRENSSHSSADGSAHSGHTTSEGYALIPIY 136 Query: 106 SGVFPTGNKWNTV------GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 S G + + S + + + Q SM P + GD+L+L Sbjct: 137 SVHASAGLGEEVIQEDVLDHLAFQTSWLSQKGLDPCKLGVIQAQGDSMYPTFDDGDVLLL 196 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIA 216 + + ++ + + K L I ++S N Y V + E + Sbjct: 197 DMGQREVVDGKVFVLRSEEYLYVKRLQILP-GRILIVSDNPKYQSVQVTREERELWKIVG 255 Query: 217 RILWA 221 R++W Sbjct: 256 RVVWV 260 >gi|218296125|ref|ZP_03496894.1| peptidase S24 and S26 domain protein [Thermus aquaticus Y51MC23] gi|218243502|gb|EED10031.1| peptidase S24 and S26 domain protein [Thermus aquaticus Y51MC23] Length = 220 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 11/210 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP---STESIFKI 61 + +K AI R L+ L + G ++ + R+ E++ ++ Sbjct: 6 TDEKAGLAIRRRMRELGLSQKELGARVGKSQAWVSQELLRTPKQVIRYLWARDPEAVQRL 65 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L T + +E + Y P G G ++ T+ +P Sbjct: 66 LHVLQWTPEEFSRETGIHIPGSEIPGAIPVVRYRIPVIDAGAGPPMWN-EGAEYITLHIP 124 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E+R + + + + SM P R GDI++ + G + + ++ Sbjct: 125 ELRGKR------EEELFAVRVKGDSMEPTLRDGDIVVFWTGGAPEPGRIVAVHVHWDGVI 178 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L S L S N +P + +D Sbjct: 179 VKRLQRY-NGSWYLYSDNPDHPPVPLTEND 207 >gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] Length = 224 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 26/222 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I + E LT + L K G+ T+ N ++ R + ++++ A + Sbjct: 4 KIGARIKKAREEKYLTQAELGVKLGVSATAINYYEKG-----KRKIGIDDLYRMANALGK 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTV 118 + L +K+ P ++ N + Sbjct: 59 PLEYFLGRDVGSVGRGDKQPSGSNRENINNTFNDMTGIPVLGTVSAGELLYSEQNISGYL 118 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV-NCGDRLLIKPR 176 P + + + + SM GD++++ V G + Sbjct: 119 PFPRKMA--------DGKYFALRVKGDSMTGEGIYDGDLVLIRRQSHVDFNGQIVCALVN 170 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE--MSDIEWIA 216 + K+ + +I L + N YP ++ + Sbjct: 171 GEENTLKIFLQDENGNILLKAANPAYPDIVLQHGKDALVIQG 212 >gi|148557717|ref|YP_001265299.1| putative phage repressor [Sphingomonas wittichii RW1] gi|148502907|gb|ABQ71161.1| putative phage repressor [Sphingomonas wittichii RW1] Length = 216 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 67/215 (31%), Gaps = 7/215 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + A+D + S ++R G +P + + G R S E ++ A Sbjct: 3 DDVRSALDALIRERGEDYSAISRLLGRNPAYIQQFIKR---GSPRKLSEEDRLRLAAYFR 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L + + + G+ + + + Sbjct: 60 VPETRLGGRADGGPAGDMALAAALVTVPRI-AIGASAGPGGIAEIEERDRPIAFDDGLLR 118 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 G + + + SM P GD ++++ + + ++ K L+ Sbjct: 119 DLGAGR-RAALSIIRVAGESMEPTLHDGDDILVDRDASEIRPGGIYVLRLDDLLMVKRLL 177 Query: 187 SRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILW 220 R + + S N +P + + ++ I R+LW Sbjct: 178 RD-DRGLVVHSDNPAHPEIAGFDPATLQVIGRVLW 211 >gi|117926057|ref|YP_866674.1| phage repressor [Magnetococcus sp. MC-1] gi|117609813|gb|ABK45268.1| putative phage repressor [Magnetococcus sp. MC-1] Length = 264 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 66/245 (26%), Gaps = 27/245 (11%) Query: 3 SFSHKK----------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 + +H + + + L+ LA KAG+ +K + EG + Sbjct: 17 TLTHPQNSGTLLLMDTLGHRLKDARLALGLSQKKLADKAGVSQGLIHKLETGFYEGTGQI 76 Query: 53 PSTESIFKIL-------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 + + + + Sbjct: 77 VPIAGALDVRPEWLHSGEQPRRWGNPQYKDLRENSSHSSADGSAPSGHTTSEGYALIPIY 136 Query: 106 SGVFPTGNKWNTV------GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 S G + + S + + +TQ SM P + GD+L+L Sbjct: 137 SVHASAGLGEEVIQEDVLDHLAFQTSWLSQKGLDPCKLGVIQTQGDSMYPTFDDGDVLLL 196 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIA 216 + + ++ + + K L I ++S N Y V + E + Sbjct: 197 DMGQREVVDGKVFVLRSEEYLYVKRLQILP-GRILIVSDNPKYQSVQVTREERELWKIVG 255 Query: 217 RILWA 221 R++W Sbjct: 256 RVVWV 260 >gi|273810436|ref|YP_003344907.1| CI phage repressor [Xylella phage Xfas53] gi|257097811|gb|ACV41117.1| CI phage repressor [Xylella phage Xfas53] Length = 336 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 67/222 (30%), Gaps = 15/222 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + ++ S +A + + + KR G + + + + K+ Sbjct: 107 RFIAALGKNREVSQSAIATLCNVSEQAVSGWKRTGRIDKKHFAALSTALKV--PLEYWYG 164 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVG----VPEI 123 + + + P +G G V +P Sbjct: 165 EAYGAERVGIDVRRIRAVDGEEGTDPETGVMIPVYDLEVSGGPGCTVPEYVETRYKLPFQ 224 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + A K + +SM + GD +++++ D + G+ K Sbjct: 225 INWLRTWDAKPNDILIAKVRGSSMEDVLYDGDKVVIHTKRTRIRNDAVYALVYGGEARIK 284 Query: 184 VLISRRGRSIDLMSLNCC---YPVDTVEMS---DIEWIARIL 219 L S+ ++S N +P + V+ + I +++ Sbjct: 285 RLFVMADGSLRIVSHNPDKGRFPDEVVQPDNLEQVSIIGQVI 326 >gi|195953192|ref|YP_002121482.1| putative phage repressor [Hydrogenobaculum sp. Y04AAS1] gi|195932804|gb|ACG57504.1| putative phage repressor [Hydrogenobaculum sp. Y04AAS1] Length = 205 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 20/213 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + E ++ LA+ G D SF + G+ P E + I A Sbjct: 2 NIGQRLKYIRESKGISRRELAKMMGKDEVSFEQYLYKLESGKILNPGIELVESISKALGI 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + LL+ G + P + ++ + +P Sbjct: 62 SPKDLLEKQEEHGDIE-------TVFAIPIVDVKAGAGNPLYAEEYIYVNDIIPSRYLS- 113 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLI 186 K + SM P+ + G+ +I++++ + G +I + G ++ + + Sbjct: 114 -----------AIKIKGDSMEPIIKDGEYVIIDTSSKDIINGKIYVISDKDGGLLVRRIY 162 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L+ N Y V+ SDI I + + Sbjct: 163 KLNDGFFRLLPENEAYKSQDVKASDIRIIGKAI 195 >gi|170744745|ref|YP_001773400.1| LexA repressor [Methylobacterium sp. 4-46] gi|229621226|sp|B0UGH4|LEXA_METS4 RecName: Full=LexA repressor gi|168199019|gb|ACA20966.1| transcriptional repressor, LexA family [Methylobacterium sp. 4-46] Length = 239 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 16/234 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + + I + + PS K LD S + R R P+ Sbjct: 1 MLTRKQLDLLRFIQQRMRETGVPPSFDEMKDALDLKSKSGIHRLITALEERGFLRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDG---------RTTEKKEKEIPLLYFPPSGSGGFFDS 106 +++ ++ + L+ + Sbjct: 61 ARAIEVIRIPEAVASGPAEVVRFTPSVVEGGRSSAPVKPAPLPTALVSDESGHAVSIPVM 120 Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165 G G + + + + + + + SM GD++++ Sbjct: 121 GRIAAGTPISAIQSQSRSVAMSPDFLAGGEHYALEVRGDSMIEAGILDGDLVVIRRQDTA 180 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K L R G SI L + N Y + + R++ Sbjct: 181 NTGDIVVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGRLV 233 >gi|240948773|ref|ZP_04753145.1| phage repressor [Actinobacillus minor NM305] gi|240296989|gb|EER47567.1| phage repressor [Actinobacillus minor NM305] Length = 218 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 76/224 (33%), Gaps = 23/224 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S++ + + I + LT LA G+ + ++ + + P+ E+I + Sbjct: 1 MSNQTLGDRIRNRRKELKLTQKDLATALKGVSHVAISQWESNTTK-----PNAENILDLS 55 Query: 63 AATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 I L S+ +IPL+ + +G D G+ + + Sbjct: 56 TVLQCEISWLLRGNGESNVVPASIGMTKIPLISYIQAGQWTGIDDFRETCGD-YEYI--- 111 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + SM P + +GD++I++ + G+ + + Sbjct: 112 ------LTDLDVSDDAFALEIKGDSMTPDFLEGDVVIIDPNEPPHAGEFVAAINGNYEAT 165 Query: 182 AKVLISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K +L++LN YP + +I I ++ Sbjct: 166 FKKYRPLGEVDNFGREHFELIALNPDYPKLSTLKQEIRIIGTMV 209 >gi|215479977|ref|YP_002332426.1| c repressor [Pseudomonas phage MP29] gi|169409241|gb|ACA57646.1| c repressor [Pseudomonas phage MP29] Length = 240 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 22/230 (9%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +F+ + + I +A + LA++ G+ T + + E + I Sbjct: 20 PTFTQE-VGTRIAEVARLLG-SRRALAKQVGIHETQLYRYIKGINAAAP-----ELLSAI 72 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---- 117 A ++ L++ E + G G+ T Sbjct: 73 AKAGRVSLDWLINGEEVAATPAEGAKS------IEGEYVYIPLYDGQVSAGHGSWTDGAT 126 Query: 118 --VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 V + R + + + SM PL GD ++++ + + Sbjct: 127 VLVNLAFTRYSLRKKGLDPSSISAIRIGGDSMEPLLCDGDTVLVDHTKSTVQDAAVYVVR 186 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWAS 222 + AK L R S+ ++S N Y V +SD+E I R++WAS Sbjct: 187 LDDHLYAKRLQRRFDGSVSIISENKAYTEMIVPKAKLSDLEIIGRVVWAS 236 >gi|319775381|ref|YP_004137869.1| hypothetical protein HICON_07210 [Haemophilus influenzae F3047] gi|329122603|ref|ZP_08251182.1| XRE family transcriptional regulator [Haemophilus aegyptius ATCC 11116] gi|317449972|emb|CBY86184.1| Putative uncharacterized protein [Haemophilus influenzae F3047] gi|327472617|gb|EGF18046.1| XRE family transcriptional regulator [Haemophilus aegyptius ATCC 11116] Length = 229 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 26/232 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + + E L+ + ++ G+ + + + G+ R P +I + Sbjct: 1 MSDLS-----TRLKTLLEEKGLSMNAFSKMVGVSQPAISDI----VSGKTRSPK--NIVE 49 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVG 119 I A + L + + + Sbjct: 50 IATALGVDVNWLKNGEGD--SEIGRITAYCHSEKDNEHTLRVDLLDVNLAAYSSGIINAE 107 Query: 120 VPEIRSP----HNGIYAIQTQD-----TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 P I S G I + + SM+P ++ DI+ +++ I+ G+ Sbjct: 108 YPNIVSSLYFTEEGANRILGRTTTNGVYMFRVPTDSMVPTIKQTDIVFIDTNIKHYIGEG 167 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219 + G+ K L I +S N Y + I + + Sbjct: 168 IYAFSLNGEEYIKRLQRLPTGVIRALSDNKHYEPFDITEELFDSAVIIGKFI 219 >gi|161345277|gb|ABX64473.1| putative phage repressor [Pseudomonas syringae] Length = 238 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 64/229 (27%), Gaps = 20/229 (8%) Query: 11 EAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + L+ A + GLD + ++ + + +T KI + Sbjct: 6 QRISALRAAMAGLSQKDFANQHGLDASYLSQLLNGHRKLGEKAAATLE-EKINLHPGSLV 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + S V Sbjct: 65 NPELLSGSDTAEIIVPAVAPVDSRTVMQSLGFITIPHLDVAASMGSGNVPPDSQIEVIKD 124 Query: 130 -------------IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 ++ SM +R GD L+++ I D + + Sbjct: 125 ITVHLDWLKTQGLAFSRIENLAIITGDGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTL 184 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI--LW 220 GD+ K L G ++ ++S N YP +E +D + AR+ +W Sbjct: 185 DGDLYIKRLQRMTGGALRMISDNPLYPAIIIEGADLTKVHIQARVLLVW 233 >gi|145631924|ref|ZP_01787679.1| hypothetical protein CGSHi22421_00742 [Haemophilus influenzae R3021] gi|260582515|ref|ZP_05850306.1| transcriptional activator-regulatory protein [Haemophilus influenzae NT127] gi|144982429|gb|EDJ89999.1| hypothetical protein CGSHi22421_00742 [Haemophilus influenzae R3021] gi|260094495|gb|EEW78392.1| transcriptional activator-regulatory protein [Haemophilus influenzae NT127] Length = 231 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 26/233 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + + E L+ + ++ G+ + + + G+ R P +I + Sbjct: 1 MSDLS-----TRLKTLLEEKGLSMNAFSKMVGVSQPAISDI----VSGKTRSPK--NIVE 49 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVG 119 I A + L + + G+ Sbjct: 50 IATALGVDVNWLKTGEGEPIAQGSLISSLVSTDSDEHHRFRVDYLDVQAAAGHSGIENAD 109 Query: 120 VPEIRSPHNGIY---------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 PE+ + + SM+P KGDI+ +++ + G+ Sbjct: 110 YPEVIQSIYFSKEGLLEIVGKSTNDGISLINVPTDSMVPTINKGDIVFVDTKVNYYTGEG 169 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI----EWIARIL 219 + G K L+ +S N YP + ++ I + + Sbjct: 170 VYFFLLNGGAYIKRLMKLPTGVYRAISDNSVYPDFDIS-DELFDTAVIIGKFI 221 >gi|260845233|ref|YP_003223011.1| putative phage repressor [Escherichia coli O103:H2 str. 12009] gi|257760380|dbj|BAI31877.1| predicted phage repressor [Escherichia coli O103:H2 str. 12009] gi|309702933|emb|CBJ02264.1| putative phage protein [Escherichia coli ETEC H10407] Length = 224 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 24/224 (10%) Query: 5 SHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + I + ++ ++ + LAR+ L+ + ++ + G + P ++ +I Sbjct: 4 TTDILSQNIKYLMDKAKISSITELARRLQLNQPTLHRL----VSGEVKDPKYATLKQIAD 59 Query: 64 ATNETICQLLDLPFSDGRTTEK---------KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + L + + + + ++P+L G GG + + G+ Sbjct: 60 YFHVSPIDLAERSLQEMEKEDATGIKTYISLRFNKVPVLGNTQLGVGGLWSDTQYSVGSS 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + P K SM+P ++G+ +I+ GD +L+ Sbjct: 120 DGFIYWPTK----------DEDAYALKCVGDSMMPRIKEGEFVIVEPNHDYTPGDEVLVV 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R G+++ K + R LMS+N +P V +IE I + Sbjct: 170 TREGEVMVKTFLFERDGLFHLMSVNEDHPPVRVPRENIEKIHYV 213 >gi|84503087|ref|ZP_01001183.1| LexA repressor [Oceanicola batsensis HTCC2597] gi|84388631|gb|EAQ01503.1| LexA repressor [Oceanicola batsensis HTCC2597] Length = 233 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 12/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + + G + + G G Sbjct: 61 ARAIEIVKLPDSLGGDGGGFVPRVIDGGAGPADPPLGDTRP-VEAAHALELPVMGRIAAG 119 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + G + + + + + SM+ GD++++ + GD Sbjct: 120 VPIEAINQVSHHVAVPGSMLSGRGEHFALEVRGDSMIDAGINDGDVVVVRETGSADNGDI 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R G+ I+L++ N Y + + ++ R++ Sbjct: 180 VVALVDEQEATLKRFFRRSGQ-IELVAANPAYETRVLPDNRVKVQGRLV 227 >gi|33341104|gb|AAQ15118.1| LexA [Paracoccus denitrificans] Length = 233 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 63/234 (26%), Gaps = 22/234 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE---- 56 M + ++ E I R + PS K LD +SK R+R T Sbjct: 1 MLTRKQIQLLEFIQARMARDGVPPSFDEMKLALDL----RSKSGNSPPRDRPXGTRGSSA 56 Query: 57 ---------SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 I ++ + ++ + + + G Sbjct: 57 ACRIAPVRWEIVRLPESLSKGPGFQPRVIEGTMPDRPGPLPRGAMEVSVSAIELPVM--G 114 Query: 108 VFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165 G + + Q + + + SM GD++++ Sbjct: 115 RIAAGLPIEAISEISHHIAVPTTMLSGQDRHYALEVRGDSMIEAGINDGDVVVIREQNAA 174 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + G I L + N Y + + R++ Sbjct: 175 ESGDIVVALVDGYEATLKRYRRK-GNMIALEAANPAYETRVLPEDKVRIQGRLV 227 >gi|301386007|ref|ZP_07234425.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13] gi|302058863|ref|ZP_07250404.1| putative phage repressor [Pseudomonas syringae pv. tomato K40] Length = 238 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 64/229 (27%), Gaps = 20/229 (8%) Query: 11 EAIDRMA-ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + L+ A + GLD + ++ + + +T KI + Sbjct: 6 QRISALRTAMAGLSQKDFANQHGLDASYLSQLLNGHRKLGEKAAATLE-EKINLHPGTLV 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + S V Sbjct: 65 NPELSSGSDAAEIIVPTVAPVDSRTVMQSLGFITIPHLDVAASMGSGNVPPDSQIEVIKD 124 Query: 130 -------------IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 ++ SM +R GD L+++ I D + + Sbjct: 125 ITVHLDWLKTQGLAFSRIENLAIITGDGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTL 184 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI--LW 220 GD+ K L G ++ ++S N YP +E +D + AR+ +W Sbjct: 185 DGDLYIKRLQRMTGGALRMISDNPLYPAIIIEGADLTKVHIQARVLLVW 233 >gi|229590309|ref|YP_002872428.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens SBW25] gi|229362175|emb|CAY49077.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens SBW25] Length = 235 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 25/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S K + I E+ L+ + LA+ G ++S+ E R P+ + I KI Sbjct: 20 RSMKTLGSRIAHYREKAGLSQAALAKACGWK----SQSRIGNYEKDAREPNLDDISKIAH 75 Query: 64 ATNETICQLLDLPFSD----GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 LL S K P++ + +G+ +P G +T Sbjct: 76 ELKIDPAALLLPGESPSNISIAAQPTKSFRYPVVSWVAAGAWAEAVE-PYPAG-ISDTYE 133 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IK 174 E Y + + SM +G ++++++ +V G ++ Sbjct: 134 FSE--------YDSKGPAFWLTVKGDSMTAPAGQSITEGTLILVDTEAEVAPGKLVVAKL 185 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 P + + K L+S G + L LN YP++ V+ + + ++ A Q Sbjct: 186 PDSNEATFKKLVSD-GGRLFLKPLNPSYPIEAVD-ENCRIVGVVVQALQ 232 >gi|262043414|ref|ZP_06016539.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039240|gb|EEW40386.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 207 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 67/211 (31%), Gaps = 21/211 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNE 67 + +T + +A AG+ S + GR R P + + K L + Sbjct: 3 LAARFKARRIELGMTQTEVANVAGVSQQSIESIE----SGRTRKPRNVLELAKALKCSP- 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L + E + IP+L + +G G + V Sbjct: 58 ---DWLLNGKNIMPLAEVSTRHIPILSYVQAGQCTEARDYTNMEGE-FEYVLADAD---- 109 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P +++GDI+I++ + G+ ++ K + K Sbjct: 110 -----VPETCFALRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNNGHEATFKKYRP 164 Query: 188 RRGR--SIDLMSLNCCYPVDTVEMSDIEWIA 216 +L+ LN YPV + I Sbjct: 165 LGIGIEDFELVPLNPDYPVLRSAELPLRVIG 195 >gi|238898738|ref|YP_002924420.1| APSE-2 prophage; cI [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466498|gb|ACQ68272.1| APSE-2 prophage; cI [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 260 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 32/232 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + K+ + I ++ + + + L+R+ G+ + ++ G + P + I Sbjct: 29 MGMMT-AKLNKNIKKLMAEKGVKSVAELSRRIGMPQPTLHRML----SGEVKSPRLKIIQ 83 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG----------------GF 103 KI +LL + + + + + G+ Sbjct: 84 KIADFFRVEANELLYKDLITSHISIENKTKAYERVEVKAIPFNFCKVPVLGTTQLGGGGY 143 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 ++S G+ + + P + Q SM+P + G+ +++ Sbjct: 144 WNSKESSAGHDYGYIIWPTE----------DRDAFALRCQGESMMPRIQHGEFVVMEPNH 193 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + GD +L++ G ++ K + +R + L+S+N +P + S IE I Sbjct: 194 KYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAASTIEKI 245 >gi|218555126|ref|YP_002388039.1| putative repressor CI from bacteriophage origin [Escherichia coli IAI1] gi|218361894|emb|CAQ99494.1| putative repressor CI from bacteriophage origin [Escherichia coli IAI1] Length = 224 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 24/224 (10%) Query: 5 SHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + I + ++ ++ + LAR+ L+ + ++ + G + P ++ +I Sbjct: 4 TTDILSQNIKYLMDKAKISSITELARRLQLNQPTLHRL----VSGEVKDPKYATLKQIAN 59 Query: 64 ATNETICQLLDLPFSDGRTTEK---------KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + L + + + + ++P+L G GG + + G+ Sbjct: 60 YFHVSPIDLAERSLQEMEKEDATGIKTYISLRFNKVPVLGNTQLGVGGLWSDTQYSVGSS 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + P K SM+P ++G+ +I+ GD +L+ Sbjct: 120 DGFIYWPTK----------DEDAYALKCVGDSMMPRIKEGEFVIVEPNHDYTPGDEVLVV 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R G+++ K + R LMS+N +P V +IE I + Sbjct: 170 TRDGEVMVKTFLFERDGLFHLMSVNEDHPPVRVPRENIEKIHYV 213 >gi|254224901|ref|ZP_04918516.1| transciptional regulator [Vibrio cholerae V51] gi|125622589|gb|EAZ50908.1| transciptional regulator [Vibrio cholerae V51] Length = 264 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 69/241 (28%), Gaps = 26/241 (10%) Query: 6 HKKIWEAIDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K+ + + + + G +A+K G+ P + +K R E I Sbjct: 23 RKEFAQRLAQACNDAGIDAHGRGVIIAKKIGVTPKAVSKWLNAESM--PRQNKMEEIANF 80 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGNK 114 L + + FS+ + + + S G F GN Sbjct: 81 LGVSLFWLQYGKQESFSEVKEKPNAYMLGEMQEWDSSTPLGDDEVMVPFLSDVRLSAGNG 140 Query: 115 WNTVG-------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 + + +S SM P+ G + +N A + Sbjct: 141 FLNEEELDNGFKLRFAKSTLRRYGVCAKDAVCVSVSGNSMEPVLPDGSTVGINRADRTLS 200 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIE-----WIARILWA 221 ++ G++ K L G + + S N YP + + I R+ W Sbjct: 201 DGKIYAINHNGELFIKRLYKLPGGGVRIYSFNEIEYPPREYTEAQVVEQKISIIGRVFWY 260 Query: 222 S 222 S Sbjct: 261 S 261 >gi|218547977|ref|YP_002381768.1| Cro/CI family transcriptional regulator [Escherichia fergusonii ATCC 35469] gi|218355518|emb|CAQ88129.1| putative transcriptional regulator, Cro/CI family from phage origin [Escherichia fergusonii ATCC 35469] Length = 228 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 16/228 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + E ++ + LA K GL S K + + + I K+L + Sbjct: 2 KTLAERLKIGREIAGMSQAQLAEKIGLSQQSVAKIENGET---LQPRKIKEIAKVLGVSQ 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-----VP 121 + + ++ S K+ + L G V P Sbjct: 59 KWLQLGIEDNASIPDLVVKEAESTALDPDIFVNIPVLDVELSAGNGCLAEIVESAIDWFP 118 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179 R+ + K S+LP+ GD++ ++ + + GD L Sbjct: 119 LRRADLRKSGVCASNAKIVKIWGNSLLPVLNNGDLVAVDISQTVPIRDGD-LYAVRDGVL 177 Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222 + K+LI+ + L S N YP + + D I I R+ W+S Sbjct: 178 LRVKILINLPDGGLILRSFNKDEYPDEILTFEDRRARIHVIGRVFWSS 225 >gi|154253617|ref|YP_001414441.1| LexA repressor [Parvibaculum lavamentivorans DS-1] gi|171769676|sp|A7HY01|LEXA_PARL1 RecName: Full=LexA repressor gi|154157567|gb|ABS64784.1| SOS-response transcriptional repressor, LexA [Parvibaculum lavamentivorans DS-1] Length = 237 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 62/232 (26%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + ++ I + ++PS + L + ++ +R I Sbjct: 1 MLTRKQHELLMFIHERIKEGGVSPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLPHR 60 Query: 53 PSTESIFKILA----ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 I K+ + + +G K + G Sbjct: 61 ARALEILKLPDAASPSLAMARGRGFSPSVIEGGAQPKPSSRDLAPARSSGDTMTLSVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G + + + + + SM GD +++ Sbjct: 121 IAAGTPIEALQEESHQVSVPLNLLGSGEHYALEVKGDSMIEAGILDGDTVLIQRCDTATS 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K L ++G SI L + N Y ++ +++ Sbjct: 181 GDIVVALVDGYEATLKRL-RKKGDSIALEAANPAYETRIFGPDRVKVQGKLV 231 >gi|332981967|ref|YP_004463408.1| SOS-response transcriptional repressor, LexA [Mahella australiensis 50-1 BON] gi|332699645|gb|AEE96586.1| SOS-response transcriptional repressor, LexA [Mahella australiensis 50-1 BON] Length = 207 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 31/222 (13%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESI 58 + K+I + I + E PS + GL TS KR +G + T+ Sbjct: 6 TVKQKQILDFIKSITEERGYPPSIREIGDAVGLSSTSTVHGYLKRLEAKGAIKRDPTK-- 63 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + G ++ + L P + N Sbjct: 64 -------------PRAMEVIYGEPSDDENISKVELANIPVLGRVAAGQPILAQENIEEYF 110 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTS-MLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + ++ + + S D +++ GD ++ Sbjct: 111 PLPLD-------FIQNSEAFMLRVKGDSMYEAGILDNDYIVVRKQETAQNGDIVVALID- 162 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K I L N V+ D++ + +++ Sbjct: 163 DDATVKRFYKEED-HIRLQPENPFMQPIIVK--DVKILGKVI 201 >gi|144898408|emb|CAM75272.1| Peptidase S24, LexA repressor [Magnetospirillum gryphiswaldense MSR-1] Length = 236 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 54/231 (23%), Gaps = 13/231 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + ++ ID ++PS K LD S + R R Sbjct: 1 MLTRKQYELLMFIDERLRATGISPSFDEMKDALDLKSKSGIHRLITGLEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETI---CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + K+ + P + + + G Sbjct: 61 ARALEVVKLPDNLGDQPLPAPSAKFSPTVIQGNFTQTVFAGAAPVAGVADAVSLPLYGKI 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168 G + + SM GD +I+ S G Sbjct: 121 AAGTPIEALRDHSNSVEVPAALLTGGDHYALTVEGDSMIEAGILDGDTVIIRSCDTAEAG 180 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K L + SI L N Y ++ R++ Sbjct: 181 TIVVALVDDQEATLKRLRRKGA-SIALEPANKAYETRIFPPDRVKVQGRLV 230 >gi|153001080|ref|YP_001366761.1| putative phage repressor [Shewanella baltica OS185] gi|151365698|gb|ABS08698.1| putative phage repressor [Shewanella baltica OS185] Length = 225 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 16/222 (7%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E +T LA +A + +K ++ + + + + A + + Sbjct: 1 MEAIGMTQKELAERADISQVMVHKLVSGKVKTTGKLLNIAAALRCTAEELQYGEEGAKAK 60 Query: 77 FSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNKW-NTVGV-----PEIR 124 ++ + + ++ + F+ G+ + + Sbjct: 61 AANRIESNAEWAGGFEIWDSDTPLGEDEVEIPFYMEVELAAGDGILDCREFKGPKLRFTK 120 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 S K SM P+ G + ++++ ++ G + KV Sbjct: 121 STLKRQGVNSDYAACVKVNGNSMEPILPHGSTVGVDTSATDVIDGKMYAINHDGMLRIKV 180 Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMS---DIEWIARILWAS 222 L G + L S N YP + ++ ++ I ++ W S Sbjct: 181 LYKLPGGGLRLRSYNTDEYPDERLDADQVKQVKVIGKVFWYS 222 >gi|254294062|ref|YP_003060085.1| LexA repressor [Hirschia baltica ATCC 49814] gi|254042593|gb|ACT59388.1| SOS-response transcriptional repressor, LexA [Hirschia baltica ATCC 49814] Length = 228 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 4/222 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + +++ I + + ++PS K+ LD S + R R Sbjct: 1 MLTNKQRELLLFIHQRIKETGVSPSFDEMKSALDLASKSGIHRLITALEERGFLRRLPHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + P + + + + G G + Sbjct: 61 ARAIEVLKLPESATPSAPPLGRSSFKPAIVSRDGVSSKNVANDTIPVLGRIAAGVPIAAI 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 R + Q + Q SM GDI+IL G+ ++ Sbjct: 121 QNETDRITAPTLGMNSDQHFALEVQGDSMIEAGILDGDIVILKKGDTAISGEIVVALVNE 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + +R SI L + N Y + +++ Sbjct: 181 EEATLKRI-RKRNGSIALEAANPAYETRIFGPDKVRVQGKLV 221 >gi|303257549|ref|ZP_07343561.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] gi|302859519|gb|EFL82598.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] Length = 227 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 66/219 (30%), Gaps = 12/219 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + L S +AR + P S + G+++ + + K+ + Sbjct: 7 LAERLTLALSDSGLKKSDIARLCFISPASVSDWF----SGKSKSIKSIYLPKVAKVLGVS 62 Query: 69 ICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L E + + F + + + Sbjct: 63 STWLATGNGPMKSPNVLVTEDVCDDDDWVEIPEYKIRFAAGFEQNSTLEELASEYKAAYR 122 Query: 128 NGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + R K + SM PL D+++++ + R+ + K Sbjct: 123 RSWFQRKNINPEDCKRFKVKGDSMEPLLLDHDVVLVDCSKTEIIDGRIYAFVFGDALRVK 182 Query: 184 VLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 L + SI + S N +P +T+ + ++ I ++ Sbjct: 183 RLYRKIDGSIMVHSENPNFPDETISPADTEQVQVIGEVI 221 >gi|257879532|ref|ZP_05659185.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257883466|ref|ZP_05663119.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|294622463|ref|ZP_06701485.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|257813760|gb|EEV42518.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257819124|gb|EEV46452.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|291598010|gb|EFF29120.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] Length = 234 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 31/235 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + E++N+ LA K G +S ++ ++ P +++ +I N I Sbjct: 4 ENLKFLREKYNIDQQELAEKLGRKSSSSISEWEKGKYT-----PKLKTLNEIAKIFNVDI 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-------- 121 L+++ S L + F S + N + P Sbjct: 59 DDLMNIDLSISNQIYNILPIYNQLNDENKVATYEFASNRLEEQKQENVLDFPKKEKIPTV 118 Query: 122 ----------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + D SM P+ R G + + V Sbjct: 119 HNSASAANPTELTYGDTVVEEEEFERVPSAADFAVPIIGDSMEPVIRNGQFVFVKEQPDV 178 Query: 166 NCGDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ +++ + K + ++I L S+N Y V I I +++ Sbjct: 179 EDGEIAIVELGGDGVTCKEIYKDYENQTIILRSINDLYEDRIVSPEQIRIIGKVV 233 >gi|330963891|gb|EGH64151.1| putative phage repressor [Pseudomonas syringae pv. actinidiae str. M302091] Length = 238 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 65/229 (28%), Gaps = 20/229 (8%) Query: 11 EAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + L+ A + GLD + ++ + + +T KI + Sbjct: 6 QRISALRAAMAGLSQKDFANQHGLDASYLSQLLNGHRKLGEKAAATLE-EKINLRPGSLV 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + + S V Sbjct: 65 NPELLSGSDPDQLIVPVVAPVDSRTVMQSLGFITIPHLDVAASMGSGNVPPDSQIEVIKD 124 Query: 130 -------------IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 ++ SM +R GD L+++ I D + + Sbjct: 125 ITVHLDWLKTQGLAFSRIENLAIITGDGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTL 184 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI--LW 220 GD+ K L G ++ ++S N YP +E +D + AR+ +W Sbjct: 185 DGDLYIKRLQRMTGGALRMISDNPLYPAIIIEGADLTKVHIQARVLLVW 233 >gi|209964501|ref|YP_002297416.1| LexA repressor [Rhodospirillum centenum SW] gi|226694238|sp|B6IST2|LEXA_RHOCS RecName: Full=LexA repressor gi|209957967|gb|ACI98603.1| LexA repressor [Rhodospirillum centenum SW] Length = 237 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 60/232 (25%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKS-----KRFGIEGRNRW 52 M + +++ I + ++PS + GL S ++ +R I Sbjct: 1 MLTRKQQELLLFIHERLKDGGVSPSFDEMKDALGLKSKSGIHRLITGLEERGFIRRLPHR 60 Query: 53 PSTESIFKILAATNE----TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + ++ + + + + + + G Sbjct: 61 ARALEVLRLPEQPAPLRVAPRTEEPVRFRPNVIRGDFRGALPGREARGDAEAVSLPLYGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G + + + SM+ GD +I+ Sbjct: 121 IAAGLPIEALRDTTASIDVPTGLIASGEHYALEVAGDSMVDAGILDGDTVIIQRCETAEN 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ ++ K L + G SI L N Y + R++ Sbjct: 181 GTVIVALVDDNEVTLKRLRRK-GNSIALEPANPAYETRVFGADRVRIQGRLV 231 >gi|15888721|ref|NP_354402.1| LexA repressor [Agrobacterium tumefaciens str. C58] gi|25453092|sp|Q8UFK2|LEXA_AGRT5 RecName: Full=LexA repressor gi|15156463|gb|AAK87187.1| LexA repressor [Agrobacterium tumefaciens str. C58] Length = 240 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 16/234 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ A S + K KE + + F + P Sbjct: 61 ARALEVIKLPEAYTPGARPQRGFSPSVIEGSLGKPKEPEPAPAVKAPANDFAGAATIPVM 120 Query: 113 NKWNTVGVPEIRSPHNGIYAIQ------TQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165 + + A+ + + + SM GD +I+ + Sbjct: 121 GRIAAGVPISAIQNNTHDLAVPVDMLGSGEHYALEVKGDSMIEAGIFDGDTVIIRNGNTA 180 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 NPGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGKLV 233 >gi|293392401|ref|ZP_06636723.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291425055|gb|EFE98262.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 228 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 72/231 (31%), Gaps = 22/231 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E E L+ LA K G+ S K + + R I ++ + Sbjct: 2 KTLAERFKFARENSGLSQDDLAAKVGVTQQSIAKIENGIT-LQPR-----KIKELALSLG 55 Query: 67 ETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-------TV 118 + L + + ++ + P GN + Sbjct: 56 VSQQWLQLGIEENAELSNYVVKESEEAILDPELFVSVPILDIELSAGNGAEAELIESCSD 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPR 176 P R + K S+LP+ GD + +++ + GD L Sbjct: 116 TFPLRRDDLRRAGVSASNARIVKIWGNSLLPVLTNGDYVAVDTTHTQSIRDGD-LYAIRD 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD----IEWIARILWAS 222 + K ++S + L S N YP + + ++ + I R+ W+S Sbjct: 175 GVLLRVKTVVSLPDGGVILRSFNKEEYPDEVLSYNERKARVHVIGRVFWSS 225 >gi|257066290|ref|YP_003152546.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798170|gb|ACV28825.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 206 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 76/217 (35%), Gaps = 25/217 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ E + LA+ G++ + + +R R PSTE + K N + Sbjct: 3 LGAKLKQLREEQEMKQETLAQILGINRATISMYERNQ-----RVPSTEILQKYTKTFNVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 LL ++ IP+ G+ D ++ + Sbjct: 58 SDYLLGNTHYKSNNINNEKYTIPVYASISCGNPFVADENIYDFEDIDI------------ 105 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 Q + + SM P ++ GD+ I+ ++ G ++ + K ++ + Sbjct: 106 -ALKSQGEHFGLLCRGDSMSPEFKDGDVAIIRKQSDIDSGQVAAVRINGDEATLK-IVKK 163 Query: 189 RGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARIL 219 + I L+++N + + +E I R++ Sbjct: 164 SEQGITLVAINPDVFLPQFYSNEEIINLPVEIIGRVI 200 >gi|219870852|ref|YP_002475227.1| transcriptional activator-regulator PrtR/CI repressor [Haemophilus parasuis SH0165] gi|219691056|gb|ACL32279.1| transcriptional activator-regulator PrtR/CI repressor [Haemophilus parasuis SH0165] Length = 223 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 19/224 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I++ L LA + + + + R + +I A N Sbjct: 4 LGERIEQAMNLKGLKRKELAEMLNISTMAVGDLINNKTK-KPR-----YLVEIAEALNVD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L + + + GN + +S Sbjct: 58 VKWLQTGEGEMRSHVNDVDVIDKDKDYSNTHINIDMYDIKLSAGNGKPVIEWVPRKSDEP 117 Query: 129 GIYA---------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 ++ + SM P+ D +I++ + + Sbjct: 118 LLFREAWFKVKRLSPKNCKAMYVRGHSMAPVLEDWDTVIVDISDTEIADGEVYAVVYNKH 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILW 220 K +I G+ I L+S N Y V D ++ I R +W Sbjct: 178 FYIKQIIR-TGKGIQLVSFNPEYYPIDVMDDDLNNLQIIGRKVW 220 >gi|170748438|ref|YP_001754698.1| LexA repressor [Methylobacterium radiotolerans JCM 2831] gi|229621225|sp|B1LUJ7|LEXA_METRJ RecName: Full=LexA repressor gi|170654960|gb|ACB24015.1| transcriptional repressor, LexA family [Methylobacterium radiotolerans JCM 2831] Length = 242 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 19/237 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-------- 52 M + + I + + PS K LD S + R R Sbjct: 1 MLTRKQLDLLRFIQSRMQECGVPPSFDEMKDALDLKSKSGIHRLITALEERGFLRRLPNR 60 Query: 53 ---------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 P + + T + G++ + + + Sbjct: 61 ARAIEVIRIPESLTQAAPAPQTPAEPRRFTPSVVEGGKSKQPPAPASTRMIDESGRAISI 120 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSA 162 G G + + + + + + + SM GD++++ Sbjct: 121 PVMGRIAAGTPVSAIQNQSHAITLSPDFVAGGEHYALEVRGDSMVEAGILDGDLVVIRKQ 180 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K L R G SI L + N Y + + R++ Sbjct: 181 DTANTGDIIVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGRLV 236 >gi|114771089|ref|ZP_01448529.1| LexA repressor [alpha proteobacterium HTCC2255] gi|114548371|gb|EAU51257.1| LexA repressor [alpha proteobacterium HTCC2255] Length = 228 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 59/223 (26%), Gaps = 5/223 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + + E I + ++ + PS K LD S + R R Sbjct: 1 MLTRKQLDLLEFIHKRLQKDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + L + + G G + Sbjct: 61 ARAIEILRLPESIDGGGFQPRIIEGSLTPPPAAALPIEAANALTLPIMGRIAAGTPIEAI 120 Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 G + + + SM GDI+++N GD ++ Sbjct: 121 QQVSNNVSVPGEMLKNSGRHYALEVKGDSMIEAGINDGDIVVINEQNDAENGDIVVALVD 180 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L +RG + L + N Y ++ +++ Sbjct: 181 DQEATLKRL-RKRGTVVALEAANPAYETRVYRDDQVKVQGKLV 222 >gi|304391662|ref|ZP_07373604.1| repressor LexA [Ahrensia sp. R2A130] gi|303295891|gb|EFL90249.1| repressor LexA [Ahrensia sp. R2A130] Length = 233 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 57/227 (25%), Gaps = 9/227 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTKKQHELLMFIQERMKEAGVPPSFDEMKDALDLKSKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-----SGVFPTGN 113 + L E + + G G G Sbjct: 61 ARALEVIKLPDSYQPSPAGRRPFEPSVVEGGLGRAPEMVANDTGPAMTEVPVMGRIAAGT 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + + + + SM GD +++ GD ++ Sbjct: 121 PISAIQENTHTIAVSPDMLGRGEHYALEVKGDSMIEAGILDGDTVVIQRGDTATPGDIVV 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + G SI L + N Y + +++ Sbjct: 181 ALVDHEEATLKRFRRK-GDSIALEAANPAYETRIFGPDRVAVQGKLV 226 >gi|120610433|ref|YP_970111.1| putative prophage repressor [Acidovorax citrulli AAC00-1] gi|120588897|gb|ABM32337.1| phage repressor protein [Acidovorax citrulli AAC00-1] Length = 230 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 70/219 (31%), Gaps = 15/219 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I E + ER LT LA++A + + + + R R + ++ Sbjct: 11 KTIAERLRAARERAGLTQPALAQRANVSQGTIGNIESGLRK-RPRDLLAIAAALHVSPLW 69 Query: 67 ET-----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + D + + P++ +G P G+ + P Sbjct: 70 LETGQGLMHGDHDQANVSTAPASMRPRRYPVISSVQAGEWEEIVDQFSP-GDAEDWQDSP 128 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180 P+ + ++ + + +G + ++ ++ GD ++ + Sbjct: 129 VDLGPNGFVLKLEGSSMTNPAGGR---DNFPEGMYVHIHPGVEAQPGDYVVAKREADNKA 185 Query: 181 VAKVLISRRGRSIDLMSLNCCYPV--DTVEMSDIEWIAR 217 K L+ G L ++N +P +E D I + Sbjct: 186 TFKKLVRVDGEQF-LHAINPAWPKPYIKLEPGD-RIIGK 222 >gi|212499706|ref|YP_002308514.1| cI [Bacteriophage APSE-2] gi|211731675|gb|ACJ10163.1| cI [Bacteriophage APSE-2] Length = 232 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 32/232 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + K+ + I ++ + + + L+R+ G+ + ++ G + P + I Sbjct: 1 MGMMT-AKLNKNIKKLMAEKGVKSVAELSRRIGMPQPTLHRML----SGEVKSPRLKIIQ 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG----------------GF 103 KI +LL + + + + + G+ Sbjct: 56 KIADFFRVEANELLYKDLITSHISIENKTKAYERVEVKAIPFNFCKVPVLGTTQLGGGGY 115 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 ++S G+ + + P + Q SM+P + G+ +++ Sbjct: 116 WNSKESSAGHDYGYIIWPTE----------DRDAFALRCQGESMMPRIQHGEFVVMEPNH 165 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + GD +L++ G ++ K + +R + L+S+N +P + S IE I Sbjct: 166 KYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAASTIEKI 217 >gi|262044717|ref|ZP_06017768.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037939|gb|EEW39159.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 239 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 67/236 (28%), Gaps = 14/236 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI-- 58 M + K + + ++ ++ LA+ A + + + +G R + Sbjct: 1 MQESTLKTLADRLNFAMHEMGMSQGQLAKAANMAQPTIWRITSGNAKGTTRIVDLANALG 60 Query: 59 ---FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK- 114 + + D K + F F G+ Sbjct: 61 VRPEWLSDGSGPMKPSSAHQLPKDQEYVGVKTWDKSTPLEDDEVEVPFLKDIEFACGDGR 120 Query: 115 ---WNT----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 + + + G + SM P+ G + +N+ + Sbjct: 121 IGNEDYNGYKLRFAKSTLRQIGASTDGHGILCFPVRGDSMEPVIPDGTTVAINTEDKKIV 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 ++ G K+L ++ + S N +P + ++ IE I R+ W S Sbjct: 181 DGKIYAISEDGWKRVKMLYRTGPDTVSVRSFNSVEHPAEDKPLNKIEIIGRVFWYS 236 >gi|212712325|ref|ZP_03320453.1| hypothetical protein PROVALCAL_03413 [Providencia alcalifaciens DSM 30120] gi|212685071|gb|EEB44599.1| hypothetical protein PROVALCAL_03413 [Providencia alcalifaciens DSM 30120] Length = 224 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 21/220 (9%) Query: 6 HKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 ++ + + I + + ++ + LAR+ + + ++ G + P + I Sbjct: 5 NELLIKNIKHLMDTKGISNHTELARRLKMHQPTMHRLL----SGEVKDPKISVVKNIADF 60 Query: 65 TNETICQLLDLPFSDGRTTEKKEK------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + L D + + IP++ G GG + +P G + Sbjct: 61 FHVPLTDLTDADLTKKENGVPQSAISVNYTSIPVVGRAQLGEGGCWSDLQYPIGMGEGYI 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 P SM+P ++G+ +I+ GD +L+ T Sbjct: 121 HWPTS----------DPDAYALLCVGDSMIPRIKEGEFVIIEPNHTYRPGDEVLLVTSTE 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + K + R I L S+N +P VE ++ I + Sbjct: 171 ETMVKTYLYERDGYIHLSSINDAHPPIKVEQIKVDKIHYV 210 >gi|311695997|gb|ADP98870.1| phage repressor [marine bacterium HP15] Length = 225 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 73/202 (36%), Gaps = 13/202 (6%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + A KAG+ ++F + P +S+ +I A ++ L Sbjct: 30 SARSFAHKAGMGDSTFRNILNGAL------PRLDSLLRIAKAAGVSVEWLATGKEPAKSD 83 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 ++ +E+ + + + G G++ T + R + + Sbjct: 84 SQFEEEFALIPGYNVQVAAGHGSI----AGDEAPTRELAFRRKWLRFRGLQENELALVFA 139 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 + SM P + ++++++ + + + ++ K + + + L+S N Y Sbjct: 140 KGDSMEPTISDNETVMVDTSEKKLRDGHIYVIRNGDHLLVKRIQTLWNDGVQLLSDNKEY 199 Query: 203 PVDTVEMSDIE---WIARILWA 221 P + SD+E I +++W Sbjct: 200 PPQEISKSDLENLDVIGKVVWV 221 >gi|83951834|ref|ZP_00960566.1| LexA repressor [Roseovarius nubinhibens ISM] gi|83836840|gb|EAP76137.1| LexA repressor [Roseovarius nubinhibens ISM] Length = 232 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 13/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + + I++ +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLDYINKRIQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + + + + G G Sbjct: 61 ARALEIVKLPESLGGAP--AHGFTPRVIEGDRPEAGQPANARPVEVHALELPVMGRIAAG 118 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + G + Q + + SM GDI+++ + GD Sbjct: 119 VPIEAINHVSHNVAVPGAMVSGQGNHYALEVKGDSMIEAGINDGDIVVIRETSTADNGDI 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R G +I L + N Y + ++ R++ Sbjct: 179 VVALVEDQEATLKRFFRR-GGAIALEAANPAYETRVLPDDKVKVQGRLV 226 >gi|257451797|ref|ZP_05617096.1| SOS-response transcriptional repressors [Fusobacterium sp. 3_1_5R] gi|317058353|ref|ZP_07922838.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] gi|313684029|gb|EFS20864.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] Length = 208 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 27/217 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + I ++ + LT ++ AG+ P S K + R S E++ I Sbjct: 8 ETIGDKILKLRKETALTQEQFSKIAGVTPLSILKYESGE-----RLISIETLLNIANYFK 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I + ++ +IP++ +G+G + + + E Sbjct: 63 IPIS---YFLGENILKVDENMIKIPVVSVVSAGNGKCGLD------DITDWIEFSENIF- 112 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 D SM P DIL++ ++ GD + K D+ K L Sbjct: 113 -------PACDFATTVSGDSMEPKIFDSDILLIRKTETLDSGDIGIFKID-EDVFCKKLQ 164 Query: 187 SRR-GRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 + L SLN CY + ++E I +++ Sbjct: 165 LNHLTNEVILKSLNPCYAPRYLSKEELENFKIIGKVV 201 >gi|220904000|ref|YP_002479312.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868299|gb|ACL48634.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 71/230 (30%), Gaps = 19/230 (8%) Query: 1 MTSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M +FS + +A + + E + +A + G+ T+ K + + P E Sbjct: 1 MKTFSQAGLTKAFAQRLRQRREELGMHKQDMAARVGVSLTTIQKYENG------QMPKGE 54 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ + ++ LL + + + + ++ G+ Sbjct: 55 YAVRLADTLDCSLDWLLAGKGAADGSGQNCGEARLVMVPMVEARLSAGTGSFETGGDVLR 114 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 G +Q + SM P D+++++ + R+ Sbjct: 115 HYAFRWDFLRRKG---NPSQMVLLRVSGDSMQPRIMHNDVVLIDQTQRDPVPGRIYAVGV 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARILWA 221 + KV+ + + L S N Y + + + I R +W Sbjct: 172 EDMVYLKVVNAMP-GRLILTSFNPDYAPIEADTGEQLADLVRVIGRAVWV 220 >gi|167646744|ref|YP_001684407.1| LexA repressor [Caulobacter sp. K31] gi|189046532|sp|B0SYZ8|LEXA_CAUSK RecName: Full=LexA repressor gi|167349174|gb|ABZ71909.1| transcriptional repressor, LexA family [Caulobacter sp. K31] Length = 235 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 60/230 (26%), Gaps = 13/230 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + ++PS K LD S + R R Sbjct: 1 MLTRKQHELLMFIHERIKESGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILA--------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + L T + S G Sbjct: 61 ARALEVVKLPQQATTAAPPKGRGAFRPQVLEGGGQAPTTSAQPQMAADNSRELPILGRIA 120 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169 G + + R P + + Q SM GD +I+ N G+ Sbjct: 121 AGTPIDAIQHERERLPVPESMLGAGEHYVLEVQGDSMIEAGILDGDYVIIKKGDTANSGE 180 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K L ++G SI L + N Y +E +++ Sbjct: 181 IVVAL-VGEEATLKRL-RKKGGSIALEAANPKYETRIFGPDQVEVQGKLV 228 >gi|296283865|ref|ZP_06861863.1| LexA repressor [Citromicrobium bathyomarinum JL354] Length = 228 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 55/221 (24%), Gaps = 6/221 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I E ++PS K LD S + R R + Sbjct: 1 MLTAKQHELLRFIHERLEETGISPSFEEMKEALDLKSKSGVHRLISALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNT 117 + L + + +P + G G Sbjct: 61 ARALEVLKMPESAVAGSAPKAANDLGARTTSVPARMPEAANDVIDIPLHGRIAAGAPIEA 120 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + P + + SM GD ++ A GD ++ Sbjct: 121 LEDHQSL-PVPAALLGPGEHFALEVSGDSMIEAGIFDGDYALIRRADTARDGDIVVALVE 179 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K L G + L N Y + ++ + Sbjct: 180 NEEATLKYLWR-EGGRVRLDPANPSYEPQVYDARAVQVQGK 219 >gi|325679534|ref|ZP_08159114.1| peptidase S24-like protein [Ruminococcus albus 8] gi|324108821|gb|EGC03057.1| peptidase S24-like protein [Ruminococcus albus 8] Length = 228 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 14/229 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I + I + E +T L G + ++ + + G + + P E++ + L Sbjct: 1 MEKNVEIGKRIKKRREELGMTQEALGSPLGFNKSTIQRYE-AGKVAKIKLPIIEAMAQRL 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV--------FPTGNK 114 + E + D + + F Sbjct: 60 NVSPEWLALKSDDMGEYHGAPDSLLESKVSSNVAAVLPQEKIHMIPVFGSVAAGFGAYAS 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + +G + ++ + SM P GD +++ V+ G R+ + Sbjct: 120 SDVIGYIPLYIENDFDVV---DTICIIVKGQSMYPKIEDGDRIVVRRQDSVDNG-RVAVV 175 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + V K + G ++L S N YP +E ++ + Q Sbjct: 176 MIGDEAVVKRVNFD-GERLELTSFNPEYPPRIIEGEELANCHIVGLVQQ 223 >gi|146297047|ref|YP_001180818.1| SOS-response transcriptional repressor, LexA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166224565|sp|A4XL42|LEXA_CALS8 RecName: Full=LexA repressor gi|145410623|gb|ABP67627.1| SOS-response transcriptional repressor, LexA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 202 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I + + P+ + GL TS R +G R PS Sbjct: 8 KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ + P + N +T+ Sbjct: 68 EIVD---------------------DDFYVHRNVIRLPLVGKVTAGEPILAVENIEDTIT 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + SM+ DI+I+ GD ++ Sbjct: 107 LPYDLVGTE-------DAFLLRVKGDSMIDAGIFDNDIIIVKRQNVAENGDIVVALID-D 158 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N V+ D++ + +++ Sbjct: 159 EATVKRFFKESD-HIRLQPENKAMEPIIVK--DVKILGKVI 196 >gi|289671819|ref|ZP_06492709.1| peptidase [Pseudomonas syringae pv. syringae FF5] Length = 220 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 16/217 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + L + LA +AG+ TS + +R + T + KI Sbjct: 5 DRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKA------TAHVAKIADVCGVNAL 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNG 129 L D E + S + G V P + Sbjct: 59 WLSDGKGDMTAFITSNEPSNVSMAEQSSRMYRYPLVSWVAAGEWSEAVEPYPPGAADEYD 118 Query: 130 I--YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182 + Y + + SM P +G +++++ +V G ++ + + Sbjct: 119 VSDYKAKGPAFWLVVKGDSMTAPTAPSIPEGSQILIDTRAEVLPGKLVIAKLAGSNEATF 178 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ G L LN YP I ++ Sbjct: 179 KKLVEDGGVRY-LKPLNSAYPTVQCTEG-CRVIGVVV 213 >gi|197284378|ref|YP_002150250.1| phage reprossor [Proteus mirabilis HI4320] gi|194681865|emb|CAR41178.1| phage reprossor [Proteus mirabilis HI4320] Length = 233 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 66/225 (29%), Gaps = 9/225 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK------ 60 K + E I + N+T + LA G+ P S + + +NR I + Sbjct: 2 KTMRERIKQARLAKNMTQAELAELVGVSPQSVQQWETSTEPRKNRVIKIAEILEVDTNWL 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T+ + + + + S G + + Sbjct: 62 LFGITDIDERNKVSSIQINQDIEVSDKNTYKVEMLDIQASAGPGVMVLDDFIETITAIEY 121 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + SM + D + ++ GD + + + Sbjct: 122 SADEAKRLFGGRSASTIKMITVKGDSMAGTFEPRDQIFVDITTNFFDGDGIYVFVLDNQL 181 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARILWASQ 223 K L + + + ++S N Y +E I +I + SQ Sbjct: 182 YIKRLQKQY-KRLAVISDNARYETWYLEEDSINSLYIHAKVLVSQ 225 >gi|212712857|ref|ZP_03320985.1| hypothetical protein PROVALCAL_03954 [Providencia alcalifaciens DSM 30120] gi|212684549|gb|EEB44077.1| hypothetical protein PROVALCAL_03954 [Providencia alcalifaciens DSM 30120] Length = 252 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 65/227 (28%), Gaps = 18/227 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K IWEA + LT A G + ++ + + + Sbjct: 19 KTIWEA---KRDTLGLTQEKAAEALGFSTQGAVSQYLNGRTALNT-DTTLKFAALLQVQP 74 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIR 124 + +L L + E L + G + + P+ Sbjct: 75 EDINPELKALLDYVRSNKQASVAEHSPLITRNEHNTLRLLDIYAKAGPSGFMNNEFPDTI 134 Query: 125 SPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + SM P D++ +++ + GD + + Sbjct: 135 RSIEFSSEKVFELFGRKSLKGIEMINITGDSMSPAINPRDVVFVDTHNEYFDGDGVYVFS 194 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219 + K L +G+ + + S N Y +E S D++ I +++ Sbjct: 195 FENALFIKRLQRVKGKKLAVKSDNSAYETFYIEESEMHDLKIIGKVI 241 >gi|217977841|ref|YP_002361988.1| LexA repressor [Methylocella silvestris BL2] gi|254809102|sp|B8EK86|LEXA_METSB RecName: Full=LexA repressor gi|217503217|gb|ACK50626.1| SOS-response transcriptional repressor, LexA [Methylocella silvestris BL2] Length = 236 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 62/231 (26%), Gaps = 13/231 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + ++ I+ + + PS K LD S + R I R P+ Sbjct: 1 MLTKKQSELLRFINERMKETGVPPSFDEMKDALDLRSKSGIHRLIIALEERGFIRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----- 110 ++L + + E + + G P Sbjct: 61 ARALEVLRMPGASAADAGRGRKFEPSVIEGHLGRVRPMPAARDDEDGARAMVAIPVMGRI 120 Query: 111 -TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168 G + + Q + + + SM+ D +++ G Sbjct: 121 AAGTPISALQTRSHTLNLPPEMLSQGEHYALEVRGDSMIDAGIFDADTVLIRKQDTAETG 180 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K L R SI L + N Y + +++ Sbjct: 181 DIVVALIDDEEATLKRLRRRGA-SIALEAANPAYETRIFGPDRVRIQGKLV 230 >gi|254362846|ref|ZP_04978921.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] gi|153094483|gb|EDN75317.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] Length = 219 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 38/232 (16%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKA----------GLDPTSFNKSKRFGIEGRN 50 MT+ I E+ ++ +A + + +R Sbjct: 1 MTTL-----GSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIANYERNN----- 50 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R P + I + + + L + K PL+ +G F Sbjct: 51 RTPDLDDIEILSKVLGVSP-ETLAFDTNVQLARPTKSNSYPLISNIQAGLWTEAFD--FK 107 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 ++ + P + SM P + +GD+++++ + + GD Sbjct: 108 DSEGYDYIDTEIDAGP---------DAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDY 158 Query: 171 LLIKPRTGDIVAKVLISR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + TG+ K +L+ LN +P + DI I Sbjct: 159 VAAVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIG 210 >gi|320199124|gb|EFW73719.1| Regulatory protein CI from bacteriophage origin [Escherichia coli EC4100B] Length = 249 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ E+ ++ LA+ +G+ + + G + I +I Sbjct: 20 MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 73 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L ++ K G E+ Sbjct: 74 ALGVRTEWLSSGIGPMRNDGQQSGKPTVN---HSKYFKIDVLDIEVSAGPGVINREFVEV 130 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + SM GD+L ++ ++ GD + Sbjct: 131 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 190 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 191 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 238 >gi|149184609|ref|ZP_01862927.1| LexA repressor [Erythrobacter sp. SD-21] gi|148831929|gb|EDL50362.1| LexA repressor [Erythrobacter sp. SD-21] Length = 230 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 58/225 (25%), Gaps = 12/225 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWP 53 M + ++ I + E ++PS + L S + + G R P Sbjct: 1 MLTAKQHELIRFIQQKLEETGISPSFEEMKEALDLKSKSGVHRLISALEERGFI--RRLP 58 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +++ +++ T P + G G Sbjct: 59 NRARALEVIKLPEDSVTSPSKPAAPANDTVVAVHAPKTAAPEPANDIIEVPLHGRIAAGA 118 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + P + SM GD ++ A G+ ++ Sbjct: 119 PIEAIEGQASM-PVPAALLGPGDHYALEVSGDSMIEAGIFDGDFALVKRAETARDGEIVV 177 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K L + G + L N Y E ++ + Sbjct: 178 ALVDNEEATLKYL-RKEGGMVRLDPANGAYEPQIYEAGRVKVQGK 221 >gi|307943610|ref|ZP_07658954.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307773240|gb|EFO32457.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 234 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 27/230 (11%) Query: 4 FSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + E DR+ + A K L ++ K I PS + +I Sbjct: 12 LTNTNLEEFPDRLKALIGTSSVLAFASKCELPGSTVRKYLDGSI------PSLDKATQIA 65 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW------- 115 A N ++ L + + P G Sbjct: 66 RACNVSLEWLATGQGPKHPRQASEVHAADFIGIPR-------YDAHLSAGGGTWNADKER 118 Query: 116 --NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + + SM PL DI++++ + + D + Sbjct: 119 PLDHIPFTREFLAKRLHKSKPRDLVILMVNGDSMEPLINDDDIVMVDQSKK-RLEDGIFA 177 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 K + +++ S N YP + ++ D+ I +++W Sbjct: 178 FVFDDLAKVKRFRTLANGDLEIRSDNPLYPPEVLQKEQLNDLNIIGKVVW 227 >gi|218550037|ref|YP_002383828.1| Regulatory protein CI from bacteriophage origin [Escherichia fergusonii ATCC 35469] gi|218553312|ref|YP_002386225.1| Regulatory protein CI from bacteriophage origin [Escherichia coli IAI1] gi|218357578|emb|CAQ90217.1| Regulatory protein CI from bacteriophage origin [Escherichia fergusonii ATCC 35469] gi|218360080|emb|CAQ97627.1| Regulatory protein CI from bacteriophage origin [Escherichia coli IAI1] Length = 242 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ E+ ++ LA+ +G+ + + G + I +I Sbjct: 13 MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 66 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L ++ K G E+ Sbjct: 67 ALGVRTEWLSSGIGPMRNDGQQSGKPAV---SHSKYFKIDVLDIEVSAGPGVINREFVEV 123 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + SM GD+L ++ ++ GD + Sbjct: 124 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 183 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 184 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 231 >gi|327198606|ref|YP_004327350.1| phage repressor protein [Erwinia phage phiEt88] gi|311875300|emb|CBX44558.1| phage repressor protein [Erwinia phage phiEt88] Length = 236 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 62/233 (26%), Gaps = 27/233 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + L+ L G+ + K + + ST +I A + Sbjct: 7 ERLRVSRKNKGLSQKALGDLVGVSQANIQKLENGKSQ------STGYAAQIAEALGVSAI 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG------------GFFDSGVFPTGNK---- 114 L + + S F F G+ Sbjct: 61 WLATGNGAKDSLQASSSIPPEHEWGSVSSWDNETPLDDDEVEVHFLKDIEFACGDGTFSS 120 Query: 115 WNT----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + + + G + SM P+ G + +++ + + Sbjct: 121 EDHNGFMLRFSKATLRRVGANSSGEGVLCFPATGNSMEPIIPDGTTVAVDTNNKKIVDGK 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 L G K L I + S N +P V +++I I R+ W S Sbjct: 181 LYAIDHGGLKRIKQLFRMPNNMISVRSFNKDEFPDQDVRINEITVIGRLFWYS 233 >gi|315499847|ref|YP_004088650.1| transcriptional repressor, lexa family [Asticcacaulis excentricus CB 48] gi|315417859|gb|ADU14499.1| transcriptional repressor, LexA family [Asticcacaulis excentricus CB 48] Length = 235 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 13/230 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-- 50 M + +++ I + ++PS LA K+G+ + G R Sbjct: 1 MLTTKQRELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHR-LITALEERGFIRRLAH 59 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R + E I AT + + +P G Sbjct: 60 RARALEVIKLPDQATTAAPPRGRQAFVPQVVEGTRPAAPVPASKPANDEGRELPLLGKIA 119 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 G +G R I+ + + + SM+ GD +I+ + G+ Sbjct: 120 AGVPIEALGAERDRIRVPEIFVGSGEHYLLEIEGDSMINAGILDGDYVIIKKSDSAQSGE 179 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K L + SI L + N Y ++ +++ Sbjct: 180 IVVALVDGDTATLKRLRKKGA-SIALEAANPAYKTRIYNADEVAVQGKLV 228 >gi|223935627|ref|ZP_03627543.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223895635|gb|EEF62080.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 222 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 59/223 (26%), Gaps = 12/223 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + K H LT + L G+ ++ +F Sbjct: 1 MKELTEK-----FREFRRLHGNLTQAELGEMLGVTGNYIYLIEKGIKRPSK---GLTKLF 52 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + AT + + T + G G + Sbjct: 53 ESMYATLPQMGAQPGIHPPINSLTSSGLRTTINPLTFIPGRNSAPVVSWAAAGTAHDYAD 112 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTG 178 + + + SM P GD++ + + G+ ++ + Sbjct: 113 LANQIEEVVYTDSRDPNAFALIVEGDSMYPEIAAGDVITFSPNSEPRNGNIVVARLAENH 172 Query: 179 DIVAKVLISRR--GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K GR+I L S N YP T+ +I + Sbjct: 173 GVLVKRFRRTGPEGRTIILESTNQDYPPITLPAEAFRFIYPAV 215 >gi|163760898|ref|ZP_02167977.1| putative LexA repressor (SOS regulatory protein) [Hoeflea phototrophica DFL-43] gi|162281942|gb|EDQ32234.1| putative LexA repressor (SOS regulatory protein) [Hoeflea phototrophica DFL-43] Length = 238 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 62/232 (26%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + ++ I+ + + PS LA K+G+ +R I Sbjct: 1 MLTRKQHELLLFINERMKESGIPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLP----FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + K+ + ++ + + G Sbjct: 61 ARALEVIKLPDSYQNSLQPRRGFSPSVIEGSLGKAPEPVRRSQAANDEAPQVAEVPMMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G + + + + + SM+ GD +++ + + Sbjct: 121 IAAGVPISAIQNNTHNVQVPIEMVGPGEHYALEVKGDSMIDAGIFDGDTVVIRNVSTASP 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 GDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 231 >gi|329120198|ref|ZP_08248867.1| cro/CI family prophage MuSo2 [Neisseria bacilliformis ATCC BAA-1200] gi|327463350|gb|EGF09670.1| cro/CI family prophage MuSo2 [Neisseria bacilliformis ATCC BAA-1200] Length = 217 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 11/215 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + L + A + + N + P + I KIL+ Sbjct: 7 ENVRKLIDDSGLNVAEFAERIEEKSSRVNDVLNG-----KQRPPFDMIEKILSVFQIDAN 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L+ + ++ + ++ S G+ + + + + G+ Sbjct: 62 WLITGHKNPNGLGNISDEYEYIPFYDVEVSAGYGADAYGAV-HPQSYLAFRKDWLRSRGL 120 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 Y + K + SM P GD L+++++ + + + + K + Sbjct: 121 Y--PKDLSCVKARGDSMEPTINNGDTLLVDASRNMPRDGYIYVIRSADTLWVKRIQKHID 178 Query: 191 RSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222 S+ L+S N YP T+ DI+ I +++ S Sbjct: 179 NSLLLISDNGTYPPMTLRSDQHHDIQIIGQVVNIS 213 >gi|228968306|ref|ZP_04129303.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791383|gb|EEM38988.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 17/219 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ +HNL+ L AG+ + + ++ + P +I KI Sbjct: 3 IGKNIKKLRSKHNLSQKELGEIAGVSDKAVSTWEKG-----LKEPRMGAIQKIADHFKIL 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +++ S + +I G + VP + + Sbjct: 58 KSDIIEDQDSKITHIRPNQPKIENNCKAVPLLGAIAAGTPLEMLTVEEWINVPIEITDCH 117 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + SM + + +++ +++ GD + D K Sbjct: 118 P------HAFLLRVVGDSMNKIVPPDALALIDPDVEIKNGDIAAVAVNGFDATLKRFYKF 171 Query: 189 RGR-SIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221 + +++ S N + + + + +++W Sbjct: 172 QDGITLEPESYNSEHKTQFYDSKTQEHTPVVVKGKLVWY 210 >gi|328543728|ref|YP_004303837.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [polymorphum gilvum SL003B-26A1] gi|326413472|gb|ADZ70535.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Polymorphum gilvum SL003B-26A1] Length = 237 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 58/232 (25%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQYELLMFIHERLKETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FK----------ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + I + +G + P+G G Sbjct: 61 ARAMEVVRLPESIAPGLGSPRSRGFSPSIIEGSLGRAPAQAGRTEAGDPAGMATIPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G + + + + + SM GD +++ Sbjct: 121 IAAGVPIEAIQTHSHSISVPPELLGRGEHYALEVRGDSMIEAGILDGDTVLIRKTDSAES 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K L + SI L + N Y + R++ Sbjct: 181 GDIVVALVDDEEATLKRLRKKGP-SIALEAANPAYETRIFGPGRVRIQGRLV 231 >gi|284992288|ref|YP_003410842.1| LexA family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065533|gb|ADB76471.1| transcriptional repressor, LexA family [Geodermatophilus obscurus DSM 43160] Length = 263 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 23/220 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 +++ E I ER PS + GL S + ++ + R P+ Sbjct: 55 QRRVLEVIRDSIERRGYPPSVREIGEAVGLSSASSVAHQLSVLQKKGWLRRDPNRPRALD 114 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + G +PL+ +G + + Sbjct: 115 VRLPGDSAGASAPTVVAPVGAEETPAPTYVPLVGRIAAGGPV------LAEQAVEDVFPL 168 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + K SM GD +++ G+ + G+ Sbjct: 169 PRELVG-------EGTLFMLKVTGDSMVEAAICDGDWVVVRQQPTAENGEIVAAMID-GE 220 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + L+ N Y D + R++ Sbjct: 221 ATVKTYKRR-DGHVWLLPHNPAYEPI--PGDDATVLGRVV 257 >gi|170723125|ref|YP_001750813.1| putative phage repressor [Pseudomonas putida W619] gi|169761128|gb|ACA74444.1| putative phage repressor [Pseudomonas putida W619] Length = 259 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 65/256 (25%), Gaps = 46/256 (17%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I LT LA K G+ T+ ++ + + R +I ++ Sbjct: 2 KLSERIRAARLHAGLTQRDLAEKIGIAQTAISQLESGKTQ---RSSYLMAIASTCGVSSA 58 Query: 68 TICQLLDLP--------------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + +T + K + + P + Sbjct: 59 WLAEGWGTMLRDAASVEAFLNSGDHPLKTAHENAKPVYDPGVAVALEPIQAWDDDTPLED 118 Query: 114 KWNTVGVPEIRSPHNGIY-----------------------AIQTQDTRHKTQDTSMLPL 150 + G Q SM P+ Sbjct: 119 DEVEIPFLREVELSAGSGRTVIERSSTAKLRFGKRSLRAHNVQFDQAVCVVVSGNSMEPV 178 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEM 209 G + +N ++ G + KVL G + S N +P +T Sbjct: 179 LPDGSTVGVNIGQTQIVDGKMYAIKHDGQLRVKVLYRVPGGGVRFRSFNQSEHPDETYTA 238 Query: 210 SD-----IEWIARILW 220 + IE I R+ W Sbjct: 239 DEMAEKSIEIIGRVFW 254 >gi|167465058|ref|ZP_02330147.1| SOS-response transcriptional repressor [Paenibacillus larvae subsp. larvae BRL-230010] Length = 211 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 66/222 (29%), Gaps = 24/222 (10%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M K+I+ A I R+ + +T LA+ G+ ++ + ++ + R E + Sbjct: 1 MDDKKIKEIFAANIKRLRKSRGMTQGDLAKILGVGISTVSDWEK--AKKYPRAGVIEKLS 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + + + + G GN Sbjct: 59 QYFDMPKSSFFE---------------VQGNAIEVYIEEDLVKIPIIGKVSCGNGVIAYE 103 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + + SM+ GD++++ V G+ + Sbjct: 104 EIEGYEDTPSSWVRGADFFYLRAKGDSMINARIFDGDLVLIRKQNFVEEGEIAAVLID-D 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIAR 217 ++ K + + L S N Y +I+ + + Sbjct: 163 EVYLKRVYKH-DDYLRLESENPTYKPIYKTKENCSEIKILGK 203 >gi|59714374|ref|YP_207148.1| DNA-binding protein RDGA [Vibrio fischeri ES114] gi|59482651|gb|AAW88260.1| DNA-binding protein RDGA [Vibrio fischeri ES114] Length = 203 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 20/217 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I + + + LA + ++ ++ +R P E + ++ N Sbjct: 2 KEISIRLKEKRKALRYSQRKLADLVNVTTSAISQWEREETT-----PKGEHLVRLAEVLN 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T+ L+ + S GF T + +P+ Sbjct: 57 CTVQWLVGTEDDICEYVDIPF----YEQVKASAGHGFLCECKNVT-----YISLPKAL-- 105 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 Y SM P+ +L+++S+ + + + + I K LI Sbjct: 106 --FKYFNVKDLLAITAHGDSMEPVLNDDALLVIDSSKKQIRDGSMYVIRQGDLIRVK-LI 162 Query: 187 SRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILWAS 222 S + L S N Y + E D+E + +++W S Sbjct: 163 SLDNNGLKLKSYNQSYHDEIYEDYQDVEILGKVIWYS 199 >gi|257463935|ref|ZP_05628320.1| SOS-response transcriptional repressor, LexA [Fusobacterium sp. D12] gi|317061461|ref|ZP_07925946.1| conserved hypothetical protein [Fusobacterium sp. D12] gi|313687137|gb|EFS23972.1| conserved hypothetical protein [Fusobacterium sp. D12] Length = 214 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 7/209 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + E + + LA+ + +N +R ++ PS E + +++ + Sbjct: 6 YLKEKREELGYSQNKLAKALQITQPYYNSIERGEVKN---PPSEEILERMIELFSLNAKD 62 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + K + G G E G+ Sbjct: 63 KEYFLYLAAVERTPKIILEKMKQMKEEGPAAIPLFPRISAGIGVFGEEEVEDYISIPGVR 122 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 ++ + + + SM P R I++ +Q++ G+ G+ K L + Sbjct: 123 NLE-EVFSVRVKGDSMEPTIRNSSIIVCRQNMQIHNGEIGAFLVN-GEAFVKRLQVKSD- 179 Query: 192 SIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 I LMS N Y + + + ++L Sbjct: 180 YIVLMSDNPNYQPIYISPSDEFVSVGKVL 208 >gi|300023412|ref|YP_003756023.1| transcriptional repressor, LexA family [Hyphomicrobium denitrificans ATCC 51888] gi|299525233|gb|ADJ23702.1| transcriptional repressor, LexA family [Hyphomicrobium denitrificans ATCC 51888] Length = 239 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 16/234 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + K + I + + PS + L + ++ +R I Sbjct: 1 MLTEKQKDLLMFIHERMQERGVPPSFDEMKDALDLRSKSGIHRLITALVERGFIRRLPHR 60 Query: 53 PSTESIFKILAA------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + K+ + P T K+ P + + + Sbjct: 61 ARAIEVIKLPENQIAAATSATPAAPRGFQPSVITGTGPKQNVTPPPSHVIDARTVSVPVM 120 Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165 G G + + + + + + SM GD +I+ Sbjct: 121 GRIAAGTPISAIQNHTHDIAVSPDILTNGEHFALEVKGDSMIEAGIHDGDTVIVRRCNTA 180 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K L ++G +I L + N + ++ R++ Sbjct: 181 ENGDIIVALVEGEEATLKRL-RKKGSTIALEAANPEFKTRIFGPDQVDIQGRLV 233 >gi|312114155|ref|YP_004011751.1| LexA family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311219284|gb|ADP70652.1| transcriptional repressor, LexA family [Rhodomicrobium vannielii ATCC 17100] Length = 258 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + K++ I+ E + PS K L S + R + R P Sbjct: 21 MLTPKQKQLLLYINERIEATGVPPSFDEMKEALHLKSKSGIHRLIMALEERGFIRRLPHR 80 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-------- 107 +++ + D T + + P + D G Sbjct: 81 ARALEVMKMPERRVGFEADRRRGFMPTVIEGARRSSFEEAPQAPFIRDRDDGGISVPVMG 140 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166 G + + Y + + SM ++GD ++L Sbjct: 141 RIAAGVPRSAIEDHSHVLVMPPEYLSTGDHFALEVRGDSMIEAGIQEGDTVVLKKTAAAE 200 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K L +RG+SI L N Y ++ +++ Sbjct: 201 SGDIVVALIDDEEATLKRL-RKRGQSIALEPANPAYETRIFGPDRVKIQGKLV 252 >gi|260433608|ref|ZP_05787579.1| LexA repressor [Silicibacter lacuscaerulensis ITI-1157] gi|260417436|gb|EEX10695.1| LexA repressor [Silicibacter lacuscaerulensis ITI-1157] Length = 232 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 13/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + + + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRVQADGVPPSFDEMKTALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + + + + + G G Sbjct: 61 ARAIEIVKLPESLGGEP--TVGFKPRVIEGDKPEGPRPANFESVSVDALELPVMGRIAAG 118 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + G + Q + + SM+ GDI+++ + GD Sbjct: 119 VPIEAISHVSHHVAVPGTMVSGQGDHYALEVRGDSMIDAGINDGDIVVIRETATADNGDI 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R G +I L + N Y + ++ R++ Sbjct: 179 VVALVEDQEATLKRFFRR-GNAIALEAANPAYETRVLPNDKVKVQGRLV 226 >gi|298369854|ref|ZP_06981170.1| peptidase, S24 family [Neisseria sp. oral taxon 014 str. F0314] gi|298281314|gb|EFI22803.1| peptidase, S24 family [Neisseria sp. oral taxon 014 str. F0314] Length = 233 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 73/229 (31%), Gaps = 19/229 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +++EA +++ S LAR P + N + G + E+ I A+ Sbjct: 7 RLYEAAEKLKGIKG--QSNLARFLNTSPQTLNNWE---SRGVSSKGLIEAAKAIGASVEW 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP------PSGSGGFFDSGVFPTGNKW-NTVG- 119 + S + + F+ GN + + + Sbjct: 62 LETGTGSMDGSHTPESNATVIGTVDAWDSRTPLSGDDCEVPFYKDIHLAAGNGFSDDIED 121 Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + ++ SM P++ G L +N+A + ++ Sbjct: 122 YNGYKLRFSKATLRRHGISPAAVICVCADGDSMEPVFPDGATLGINTADKTVKDGKIYAV 181 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222 G + K+L G I + S N YP + + +DI I R+ W S Sbjct: 182 NHGGLLRTKILQKLPGNKIRIRSYNAEAYPDEEADAADINIIGRVFWWS 230 >gi|319891834|ref|YP_004148709.1| Phage repressor [Staphylococcus pseudintermedius HKU10-03] gi|317161530|gb|ADV05073.1| Phage repressor [Staphylococcus pseudintermedius HKU10-03] Length = 234 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 28/240 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I + I R + N++ LA + P++ + PS I + Sbjct: 1 MNKERNIIIAKNIRRFLDDSNMSQKKLAELINIKPSTLSDYLNLRSN-----PSHGVIQR 55 Query: 61 ILAATNETICQLLDLPFS--------------------DGRTTEKKEKEIPLLYFPPSGS 100 I + D + E+ +L+ Sbjct: 56 IADVFGVGKSDIDTTYKDENSITSIYDKLTPPRQKRVLDFANEQLNEQNNKVLHINSHNV 115 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + + + I D + SM PL+ +I+ ++ Sbjct: 116 ISEEVAVYGYASAGTGETLIDGVEFTTQYNGHIPNHDFALQVNGDSMEPLFEDKEIIFVD 175 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 Q+N G + G+ K + + I L+SLN YP + S DI+ +++ Sbjct: 176 KTKQINSGQIGIFVID-GEAYLKKVF-ISDKGIRLVSLNSKYPDLHFDSSYDIKVAGKVI 233 >gi|257467041|ref|ZP_05631352.1| SOS-response transcriptional repressor, LexA [Fusobacterium gonidiaformans ATCC 25563] gi|315918178|ref|ZP_07914418.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313692053|gb|EFS28888.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 215 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 65/209 (31%), Gaps = 7/209 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + E + + LA+ + +N +R ++ PS E + +++ + Sbjct: 6 YLKEKREELGYSQNKLAKALQITQPYYNSIERGEVKN---PPSEEILERMIGLFSLNEKD 62 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + K + G G E G+ Sbjct: 63 AEYFLYLAAVERTPKIILEKMKQIKGEGPSAIPLFPRISAGIGVFGEEEVEDYISIPGVR 122 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 ++ + + + SM P + I++ +QV+ G+ G+ K L + Sbjct: 123 NVE-EVFSVRVKGDSMEPTIKNSSIIVCRQNMQVHNGEIGAFLVN-GEAFVKRLQIKPD- 179 Query: 192 SIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + LMS N Y + + + ++L Sbjct: 180 YVVLMSDNPNYQPIYISPNDEFVSLGKVL 208 >gi|254360461|ref|ZP_04976610.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] gi|153091001|gb|EDN73006.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] Length = 218 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 23/221 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + I + LT LA G+ + ++ + + P++E+I + Sbjct: 4 QTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTTK-----PNSENILDLSTVL 58 Query: 66 NETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 I L S+ ++PL+ + +G D G+ + + Sbjct: 59 QCDISWLLRGNGESNVLPASLGMTKVPLISYIQAGQWTGIDDFRETCGD-YEYI------ 111 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + + SM P + +GD +I++ +Q + G+ + + K Sbjct: 112 ---LTDLEVSEDAFALEIKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAINGDYEATFKK 168 Query: 185 LISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + +L++LN Y + +I I ++ Sbjct: 169 YRPLEDLDEYGRQHFELIALNPDYHKLSTLKQEIRIIGTMV 209 >gi|110641328|ref|YP_669058.1| phage-related repressor protein [Escherichia coli 536] gi|110342920|gb|ABG69157.1| phage-related repressor protein [Escherichia coli 536] gi|324013243|gb|EGB82462.1| peptidase S24-like domain protein [Escherichia coli MS 60-1] Length = 230 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ E+ ++ LA+ +G+ + + G + I +I Sbjct: 1 MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L ++ K G E+ Sbjct: 55 ALGVRTEWLSSGIGPMRNDGQQSGKPAVSY---SKYFKIDVLDIEVSAGPGVINREFVEV 111 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + SM GD+L ++ ++ GD + Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219 >gi|293413803|ref|ZP_06656452.1| regulatory protein CI bacteriophage origin [Escherichia coli B185] gi|291433861|gb|EFF06834.1| regulatory protein CI bacteriophage origin [Escherichia coli B185] Length = 242 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 23/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ E+ ++ LA+ +G+ + + G + I +I Sbjct: 13 MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 66 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L ++ K P G E+ Sbjct: 67 ALGVRTEWLSSGIGPMRNDGQQLGKPTAN---HPKYFKIDVLDIEVSAGPGVINREFVEV 123 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + SM GD+L ++ ++ GD + Sbjct: 124 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 183 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 184 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 231 >gi|15837298|ref|NP_297986.1| phage-related repressor protein [Xylella fastidiosa 9a5c] gi|9105580|gb|AAF83506.1|AE003913_2 phage-related repressor protein [Xylella fastidiosa 9a5c] Length = 221 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 24/221 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I E ++ + LA+ AG+ ++ + + ST ++ KI Sbjct: 5 KIGSRIRAERENQGISRTELAKFAGIATSTLSDLELGHSR------STTALHKIAERLGV 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L T L + G G+ PEI Sbjct: 59 SAQWLETGRGEKSTDTFPAPISNNSLGYVRVQQMGEAG-----MGDGRENEDFPEIVRTV 113 Query: 128 N----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 G + + SM P G+++++++ GD L + Sbjct: 114 EYSEAFLRSLLGFLPPPGRLVLVTGKGDSMTPTIAPGEVVLVDTGTHTFEGDGLYLVNVG 173 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L R + ++S N P I ++ Sbjct: 174 HGHQIKRLQDR--GRLFVVSDNHLMPSFEFPEEGI-IGGKV 211 >gi|257453296|ref|ZP_05618595.1| SOS-response transcriptional repressor, LexA [Fusobacterium sp. 3_1_5R] gi|317059828|ref|ZP_07924313.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313685504|gb|EFS22339.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 215 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 65/209 (31%), Gaps = 7/209 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + E + + LA+ + +N +R ++ PS E + +++ + Sbjct: 6 YLKEKREELGYSQNKLAKALQITQPYYNSIERGEVKN---PPSEEILERMIGLFSLNEKD 62 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + K + G G E G+ Sbjct: 63 AEYFLYLAAVERTPKIILEKMKQIKGEGPAAIPLFPRISAGIGVFGEEEVEDYISIPGVR 122 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 ++ + + + SM P + I++ +QV+ G+ G+ K L + Sbjct: 123 NVE-EVFSVRVKGDSMEPTIKNSSIIVCRQNMQVHNGEIGAFLVN-GEAFVKRLQIKPD- 179 Query: 192 SIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + LMS N Y + + + ++L Sbjct: 180 YVVLMSDNPNYQPIYISPNDEFVSLGKVL 208 >gi|92113491|ref|YP_573419.1| putative phage repressor [Chromohalobacter salexigens DSM 3043] gi|91796581|gb|ABE58720.1| putative phage repressor [Chromohalobacter salexigens DSM 3043] Length = 227 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 20/218 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I +R L+ + A AG+ T+ ++ R P TE + A + Sbjct: 12 VGERIKGERKRLGLSQTAFANLAGVGKTTQINYEKGT-----RNPDTEYLA----ALDSA 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSP 126 + + + + + P+ S G + Sbjct: 63 GVDVYYVLTGRKSSGGSSDVQAPVEEPLDGYSPVPMYDIEAAAGAGRLIEHENIESTLYF 122 Query: 127 HNGIYAIQT----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + K + SM + GD +I++ + D + + + Sbjct: 123 QTQALSAEGLDPAHLIGAKVRGDSMGSTLQDGDRVIVDCSQ--RTPDGVFLLRVGEEYRI 180 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIAR 217 K + G + L+S N Y + ++ D+E + R Sbjct: 181 KRVQRVAGGAWLLISDNHAYEKEMIKPDEMQDVEILGR 218 >gi|110633994|ref|YP_674202.1| LexA repressor [Mesorhizobium sp. BNC1] gi|122965964|sp|Q11HT8|LEXA_MESSB RecName: Full=LexA repressor gi|110284978|gb|ABG63037.1| SOS-response transcriptional repressor, LexA [Chelativorans sp. BNC1] Length = 236 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 13/231 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + ++ I + + PS K LD S + R R P+ Sbjct: 1 MLTRKQHELLLFIHARLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----- 110 ++L + L E + P + + P Sbjct: 61 ARALEVLRLPDSIAPGLAAPRKFSPSVIEGGQGRSSPAPRPAANNDDETSVVSIPVMGRI 120 Query: 111 -TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168 G + + + + + SM GD +I+ N G Sbjct: 121 AAGVPIDAIQHRTHSIGVPPDMITGGEHYALEVKGDSMIEAGIFDGDTVIIRQTQAANPG 180 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K + SI L + N Y ++ R++ Sbjct: 181 DIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGRLV 230 >gi|126735652|ref|ZP_01751397.1| LexA repressor [Roseobacter sp. CCS2] gi|126714839|gb|EBA11705.1| LexA repressor [Roseobacter sp. CCS2] Length = 228 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 60/223 (26%), Gaps = 5/223 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + + E I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-FFDSGVFPTGNKWNT 117 + L F+ K P+ P G G Sbjct: 61 ARALEIVKLPDAMQAKTGFTPRVIDGDKPDSTPVAAIPVDNGSVDLPMMGRIAAGVPIEA 120 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + + + SM+ GD++++ + GD ++ Sbjct: 121 ISEASRNVSVPQSMVGAGDHYALEVKGDSMIDAGINDGDVVVIRETTVADNGDIVVALVE 180 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R G +I L + N Y ++ R++ Sbjct: 181 GHEATLKRF-RRNGSAIALEAANPAYETRVFRDDQVKVQGRLV 222 >gi|308751810|gb|ADO45293.1| transcriptional regulator, XRE family [Hydrogenobacter thermophilus TK-6] Length = 311 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 69/220 (31%), Gaps = 15/220 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + L+ + G + + ++ ++ I + Sbjct: 87 NIHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQ-----IPDTALKLIASTFGV 141 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT----VGVPEI 123 + L + +EI V G + + V + Sbjct: 142 SYEWLKTGQGEMWGREKLSLEEIIEREQRKLLESKIKVPVVGKAGAGFPHSPSDIEVIGV 201 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGD 179 Y + + + SM P +GD ++ + + G ++++ +G+ Sbjct: 202 VFVSKSPYLKEGKIFAVQVSGDSMHPALTEGDYVVFQTYEGDGSDIPNGKIVVVRNHSGE 261 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K L+ ++ L N YP + ++ E + RI+ Sbjct: 262 LLVKRLLKM-NGTVLLAGDNPKYPPIFPQQAEAEGL-RIV 299 >gi|269219559|ref|ZP_06163413.1| repressor LexA [Actinomyces sp. oral taxon 848 str. F0332] gi|269210801|gb|EEZ77141.1| repressor LexA [Actinomyces sp. oral taxon 848 str. F0332] Length = 237 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 13/223 (5%) Query: 6 HKKIWEAIDR--MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57 K++ A+ + R+ T +A + G TS K + +E + R P T Sbjct: 13 QKEVLNALRSELLKNRYAPTIREIADRCGFSSTSSVKYQLDALEDKGYIVRDPRRPRTIL 72 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + ++ R +E + F S G G+ Sbjct: 73 LTELGLENTHRRLYADYTSAGIPRGAAAEEPKTSAEDFHVDPSVNVPVVGRIAAGSPILA 132 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 V E P + K SM GD +++ G+ + Sbjct: 133 DQVVEEVLPLPRSLTGDGELFMLKVVGDSMVEAAICDGDWVVIRRQPVAENGEIV-AAMI 191 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ KVL + G ++ L+ N Y D E + R++ Sbjct: 192 EGEATVKVLQRKDGHTL-LLPRNSEYRPI--PADDAEVLGRVV 231 >gi|329113360|ref|ZP_08242141.1| LexA repressor [Acetobacter pomorum DM001] gi|326697185|gb|EGE48845.1| LexA repressor [Acetobacter pomorum DM001] Length = 220 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 55/220 (25%), Gaps = 17/220 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57 M + K+ ID ++ +PS + GL + ++ E Sbjct: 5 MLTRKQHKLLLFIDSHLKQTGFSPSFDEMREAMGLRSKSGIHRLISGLEE---------- 54 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + L++ P + + G G Sbjct: 55 --RGFLRRHHHRARALEVIQLPEMQELPPNVVRASFTRPKAETVRIPLYGRIAAGLPIEA 112 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 V + SM+ GD +I+ Q G ++ Sbjct: 113 VPDTSHVLTVPTEMLGTGDYYALEVAGDSMVDAGILDGDNVIIRRTDQAENGQIVVALID 172 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++ K L + G I L N Y V + Sbjct: 173 EHEVTLKRLRRK-GNMIALEPANSSYETRIVPAEKLRIQG 211 >gi|257463340|ref|ZP_05627736.1| putative prophage repressor [Fusobacterium sp. D12] gi|317060917|ref|ZP_07925402.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] gi|313686593|gb|EFS23428.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] Length = 198 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 71/212 (33%), Gaps = 27/212 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + E L+ L+ K + T+ + R + E + +IL A N + Sbjct: 5 GKKLKLLRESKGLSQEELSDKLSVTKTTIGNYENG-----RRALTLEKLAEILEALNSSF 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + L + +G+ N + + +P+ S Sbjct: 60 NEFFSLKELCTEDIKIPIVSK-----------VSAGTGLLVEENIVDYLPIPKELSN--- 105 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 D + SM P + GDI ++ ++ G+ ++ G+ K Sbjct: 106 -----KCDFATFVEGNSMFPDVKNGDIALVKMDCEIESGNIVI-FSLNGNSYIKKYHYNP 159 Query: 190 -GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 I +S N Y +V E +++ I R++ Sbjct: 160 FSNKITFISSNKEYENISVMEGDELKVIGRVI 191 >gi|26249039|ref|NP_755079.1| putative repressor protein of prophage [Escherichia coli CFT073] gi|331651509|ref|ZP_08352529.1| repressor protein C2 [Escherichia coli M718] gi|26109446|gb|AAN81649.1|AE016765_51 Putative repressor protein of prophage [Escherichia coli CFT073] gi|331050782|gb|EGI22839.1| repressor protein C2 [Escherichia coli M718] Length = 208 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 69/218 (31%), Gaps = 24/218 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + I + + L + G+ + ++ P E++ K+ N Sbjct: 2 ETVGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINT-----PGGEALSKLAKFFN 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + +P++ + +G + E+ Sbjct: 57 TS-IDYILYGAEFEGKLVTNMRRVPVISWVQAGQFTECRAAEV----------FSEVDKW 105 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDI 180 + + + + SM LP +G +I++ + G ++ + T + Sbjct: 106 VDTSLKVGDNSFALEVKGDSMTNPNGLPTIPEGATVIVDPDAEPRHGKIVIARLDGTNEA 165 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ + L+ LN YP + + + I + Sbjct: 166 TVKKLVIDGPQKF-LVPLNPRYPNIPINGNCL-IIGVV 201 >gi|302751894|gb|ADL66071.1| phage transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 242 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 76/246 (30%), Gaps = 39/246 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+SFS ++R+ + +++ S LA ++ T+ + ++ R P + + + Sbjct: 8 MSSFS-----SNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGI-----RSPKLDKLPE 57 Query: 61 ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-- 110 I L+ + + ++ +L + + + Sbjct: 58 IANVFGVKPLDLIHDMDDSKIIEEIHNVSSQLTPPRQSNVLKYATNQLEEQNNDSDNLVD 117 Query: 111 ----------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 E S + D K SM PL++ G Sbjct: 118 FNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNG 177 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213 I+ + + + G + GD K + + L+SLN Y + + Sbjct: 178 QIIFIEKSHTIKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLHFYDNESVR 235 Query: 214 WIARIL 219 + +++ Sbjct: 236 LVGKVI 241 >gi|237737791|ref|ZP_04568272.1| repressor [Fusobacterium mortiferum ATCC 9817] gi|229419671|gb|EEO34718.1| repressor [Fusobacterium mortiferum ATCC 9817] Length = 229 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 21/223 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + E ++ + A+ AG+ + +N +R ++ PS E + K ++ T + Sbjct: 6 YLKVRREALGISQNKFAKMAGITQSYYNGIERGEVKN---PPSEEILDKFVSLLLLTPSE 62 Query: 72 --------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + L + EK+ + ++ + + G T Sbjct: 63 GEKLKYLAAIERTPAIILNEIKRLSDEKELSKRQVIKDISNNNTLVPLFSRISAGIGVIT 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P GI + SM P + I+I ++ G+ + Sbjct: 123 DEEPIDYISLPGI-KNTENVFAINVKGDSMEPTIKNQSIIICRQGSELRDGE-VGAFLVN 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 G+ K + L+S N Y V + + I ++L Sbjct: 181 GESFVKRI-KVTKNFFALLSDNPNYQPIYVYPQDEFKVIGKVL 222 >gi|209917763|ref|YP_002291847.1| phage transcriptional regulator [Escherichia coli SE11] gi|209911022|dbj|BAG76096.1| phage transcriptional regulator [Escherichia coli SE11] gi|315614557|gb|EFU95200.1| helix-turn-helix family protein [Escherichia coli 3431] Length = 230 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ E+ ++ LA+ +G+ + + G + I +I Sbjct: 1 MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L ++ K G E+ Sbjct: 55 ALGVRTEWLSSGIGPMRNDGQQSGKPAV---SHSKYFKIDVLDIEVSAGPGVINREFVEV 111 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + SM GD+L ++ ++ GD + Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219 >gi|331646411|ref|ZP_08347514.1| transcriptional activator-regulatory protein [Escherichia coli M605] gi|331045163|gb|EGI17290.1| transcriptional activator-regulatory protein [Escherichia coli M605] Length = 230 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ E+ ++ LA+ +G+ + + G + I +I Sbjct: 1 MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L ++ K G E+ Sbjct: 55 ALGVRTEWLSSGIGPMRNDGQQSGKPAVN---HSKYFKIDVLDIEVSAGPGVINREFVEV 111 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + SM GD+L ++ ++ GD + Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219 >gi|323938497|gb|EGB34748.1| peptidase S24 [Escherichia coli E1520] Length = 230 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 23/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ E+ ++ LA+ +G+ + + G + I +I Sbjct: 1 MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L ++ K P G E+ Sbjct: 55 ALGVRTEWLSSGIGPMRNDGQQSGKPAAN---HPKYFKIDVLDIEVSAGPGVINREFVEV 111 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + SM GD+L ++ ++ GD + Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219 >gi|59801483|ref|YP_208195.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|59718378|gb|AAW89783.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] Length = 215 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 58/218 (26%), Gaps = 28/218 (12%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86 +A+ A + ++ + R +I K+ + + L S Sbjct: 1 MAKLAEVSQSTIAALESG------RNKKATNIAKLAKILDVSAFWLETGEGSRTAPALIN 54 Query: 87 EKEIPLLYFPPSGSG---------------GFFDSGVFPTGNKWNTVG------VPEIRS 125 + + F G + +P +S Sbjct: 55 PDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDYNGYRLPFGKS 114 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 SM + + +++ ++ + G K L Sbjct: 115 TLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYL 174 Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 I + G S+ + S N YP +T + + I R+ W S Sbjct: 175 IRQPGNSVLIRSHNSGFYPDETAPLDSLTVIGRVFWWS 212 >gi|37526812|ref|NP_930156.1| hypothetical protein plu2922 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786244|emb|CAE15296.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 212 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 16/210 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + LT + LA G S + ++ + R R+ + ++ A + Sbjct: 3 IAERVKTRRIEMGLTQTELADLIGTKQQSIEQLEKGKTK-RPRF-----LPELAVALQCS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + LL K++EI P +G V + V Sbjct: 57 VSYLLYGTE-------DKKEEIEYAGKPKNGLVRVIGEAVLGIDGAVDMVEFHAGWL--- 106 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 I + K + SM P + G+ +++ V+ GD + ++ G + K++ Sbjct: 107 RICSTDHDAYGLKVKGDSMWPRIQSGEFVVIEPNTPVHPGDEVFVRTNNGHNMIKIMNIT 166 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R S+N + T+ +++ I + Sbjct: 167 RNGDYQFSSINSDHRPITIPKNNVIMIHYV 196 >gi|257426151|ref|ZP_05602567.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428811|ref|ZP_05605206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431422|ref|ZP_05607796.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257434133|ref|ZP_05610484.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257437044|ref|ZP_05613085.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282914858|ref|ZP_06322639.1| probable transcriptional repressor [Staphylococcus aureus subsp. aureus M899] gi|282925355|ref|ZP_06333011.1| hypothetical protein SARG_02518 [Staphylococcus aureus subsp. aureus C101] gi|293507872|ref|ZP_06667714.1| hypothetical protein SCAG_02388 [Staphylococcus aureus subsp. aureus 58-424] gi|293510844|ref|ZP_06669544.1| transcriptional repressor [Staphylococcus aureus subsp. aureus M809] gi|293545444|ref|ZP_06672120.1| probable transcriptional repressor [Staphylococcus aureus subsp. aureus M1015] gi|257271059|gb|EEV03228.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274455|gb|EEV05967.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277868|gb|EEV08532.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281059|gb|EEV11203.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257283638|gb|EEV13764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282312989|gb|EFB43389.1| hypothetical protein SARG_02518 [Staphylococcus aureus subsp. aureus C101] gi|282321252|gb|EFB51582.1| probable transcriptional repressor [Staphylococcus aureus subsp. aureus M899] gi|290919755|gb|EFD96827.1| probable transcriptional repressor [Staphylococcus aureus subsp. aureus M1015] gi|291094935|gb|EFE25203.1| hypothetical protein SCAG_02388 [Staphylococcus aureus subsp. aureus 58-424] gi|291466316|gb|EFF08842.1| transcriptional repressor [Staphylococcus aureus subsp. aureus M809] Length = 210 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 77/225 (34%), Gaps = 23/225 (10%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +K+I I R+ + +N+ + L+R + T+ + + R E + K Sbjct: 1 MLGNKEIMAKNISRLMKENNVDRNKLSRDLKISYTTLSDWIN--AKTYPRIDKIEMLAKY 58 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 ++ + ++ + + + P S ++ N + + Sbjct: 59 FGVEKSSLVE---------SPSKIVQLDTLPVKKIPVVSKISAGMPIYAEENLIDYIYF- 108 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + SM L+++GD++++ V G ++ + Sbjct: 109 -----ATKNLSSNKEEFGLQVSGDSMDKLFQEGDVVVVEKDSTVENGQLGVVLVNGYNGT 163 Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDTVEMSD-IEWIARILWASQ 223 K + I L+ N + D I+ + R++ ASQ Sbjct: 164 VKRIRY-NNDQIILIPESNNPSHYPQVYGKDDEIKIVGRVV-ASQ 206 >gi|325271879|ref|ZP_08138337.1| putative phage repressor [Pseudomonas sp. TJI-51] gi|324102998|gb|EGC00387.1| putative phage repressor [Pseudomonas sp. TJI-51] Length = 276 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 67/270 (24%), Gaps = 57/270 (21%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF----------------------- 44 ++ + + LT + LA +AG+ S ++ +R Sbjct: 2 ELKDRLKHARRLKGLTQTELAERAGIAQASISEIERGLSRSSSHLVKIAQICGVDALWLA 61 Query: 45 ---GIEGRNRWPST----ESIFKILAATNETICQL---------------LDLPFSDGRT 82 G P E I K+ AA +D Sbjct: 62 EGVGSIPAPTEPGYALVGEEIQKLSAADMVRQMLAKTGSGLSEEARNRLLQAAEETDSPP 121 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI----------YA 132 + K G+ T PE+ + Sbjct: 122 GDGSAKVGASRGSAGDMIRIAHYDVRGAMGSGQVTHDYPEMLRDVRVSLRHLRELGLDFK 181 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 SM P + D LI++ ++ GD + G K L Sbjct: 182 EPHHLKLVTGWGQSMAPTIKDRDPLIVDVTVREFVGDGVYFISWGGHEYIKRLQVADDEH 241 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARI--LW 220 +++S N + + + A++ +W Sbjct: 242 FEMISDNPKHKDRMIRKEETYIQAKVLYVW 271 >gi|332670100|ref|YP_004453108.1| transcriptional repressor, LexA family [Cellulomonas fimi ATCC 484] gi|332339138|gb|AEE45721.1| transcriptional repressor, LexA family [Cellulomonas fimi ATCC 484] Length = 253 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 60/220 (27%), Gaps = 20/220 (9%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRW----PSTESIFK 60 + E I E PS + GL P+S ++ +G R P + + Sbjct: 39 VLETIRASVESRGYPPSMREIGEAVGLTSPSSVKHQLTVLERKGYLRRDPNRPRAIEVVQ 98 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + D S T + +P + P + + + Sbjct: 99 PDDSRGVGTWTAPDGSRSAFAPTGDDGERVPSPSYVPVVGRIAAGGPILAEQVVEDVFPL 158 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + SM+ GD +++ G+ + G+ Sbjct: 159 PRQLVG-------DGDLFLLRVAGDSMVDAAICDGDWVVVRRQPVAENGEIVAAMID-GE 210 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L R + LM N Y + + R++ Sbjct: 211 ATVKTL-RRADGHVWLMPHNAAYSPI--AGDEATILGRVV 247 >gi|87119734|ref|ZP_01075631.1| probable transcriptional regulator [Marinomonas sp. MED121] gi|86165210|gb|EAQ66478.1| probable transcriptional regulator [Marinomonas sp. MED121] Length = 244 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 67/232 (28%), Gaps = 16/232 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ A+ + + + + LA++ G + NK + R T SI + Sbjct: 10 DRLLIALQKAGIQRHGAGAWLAKQTGTTVKAANKWLNGESQPRREKVHTISIATGVRTEW 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYF-------PPSGSGGFFDSGVFPTGNKWNTVG 119 + + + + P FF GN +N V Sbjct: 70 LEYGMGEMQTTQEENKQDNHLNLGHIDAWDSDTPLNPNEVEIPFFSEIELSAGNGFNNVL 129 Query: 120 ------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + S N K SM P+ G + L+ + ++ Sbjct: 130 DIATQKLRFNVSTLNKAGVSSDTVACCKVNGDSMEPILPNGSTVGLDISQTKIQDGKMYA 189 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222 G + K L + + S N + + + D+ I R+ W S Sbjct: 190 IEHGGMLRVKYLYRLPFNGLRIRSANPDHHDEELSGESALDVRVIGRVFWYS 241 >gi|46201430|ref|ZP_00208098.1| COG1974: SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Magnetospirillum magnetotacticum MS-1] Length = 235 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 58/231 (25%), Gaps = 14/231 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ ID ++PS K LD S + R R + Sbjct: 1 MLTRKQYELLMFIDERLRATGISPSFDEMKDALDLKSKSGIHRLITGLEERGF-IRRLAH 59 Query: 61 ILAATNETICQLLDLPFSDGRT-----------TEKKEKEIPLLYFPPSGSGGFFDSGVF 109 A + ++ + PS S G Sbjct: 60 RARALEVVRLPENRHDQTLPPPAKAFAPNVIKGGFASQQLVGAPVAVPSDSVSLPLYGKI 119 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168 G + + SM GD +++ S G Sbjct: 120 AAGTAIEALSDHSRSIDIPASMLGSGNHYALTVEGDSMIEAGINDGDTVVIRSCDSAETG 179 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ ++ K L + G S+ L N Y + ++ R++ Sbjct: 180 TIVVALVDDTEVTLKRLRRK-GTSVALEPANKAYETRVLPPDRVKVQGRLV 229 >gi|260576320|ref|ZP_05844311.1| SOS-response transcriptional repressor, LexA [Rhodobacter sp. SW2] gi|259021391|gb|EEW24696.1| SOS-response transcriptional repressor, LexA [Rhodobacter sp. SW2] Length = 228 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 58/223 (26%), Gaps = 5/223 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ + I ER + PS K LD S + R R Sbjct: 1 MLTRKQLELLDFIKTRTERDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L +K + + + G G + Sbjct: 61 ARALEIIKLPEAMERPGFSPKVIQGDKVDPPRGAMPVDAVYAFELPVMGRIAAGVPIEAI 120 Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 G + + + + SM GDI+++ GD ++ Sbjct: 121 SEVSHHVAVPGSMLSGKGNHYALEVKGDSMIEAGINDGDIVVIREQNTAENGDIVVALVE 180 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R I L + N Y ++ R++ Sbjct: 181 DSEATLKRFRRRGA-MIALEAANPAYETRVYADHLVKVQGRLV 222 >gi|103486322|ref|YP_615883.1| LexA repressor [Sphingopyxis alaskensis RB2256] gi|123380023|sp|Q1GUX2|LEXA_SPHAL RecName: Full=LexA repressor gi|98976399|gb|ABF52550.1| SOS-response transcriptional repressor, LexA [Sphingopyxis alaskensis RB2256] Length = 227 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 55/222 (24%), Gaps = 9/222 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWP--STE 56 M + ++ I + + ++PS + GL S R R Sbjct: 1 MLTAKQHELLHFIQQRLDASGISPSFEEMKEALGLKSKS--GIHRLISALEERGFLRRLP 58 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L + + + ++ L + G G Sbjct: 59 NRARALEVLKLPDTAKSVVTNNRDNVVQLRKAPSALKPIAANDIIEVPLHGRIAAGVPIE 118 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 E + + + SM GD ++ A GD ++ Sbjct: 119 AFEDHEQLA-VPAALLGSGEHYALEVSGDSMVEAGIFDGDYALIQKADTAREGDIVVALV 177 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 D K R G+ I L N Y + R Sbjct: 178 DGQDATLK-FFRREGKMIRLDPANSAYEPQRYPAERVIVQGR 218 >gi|222529484|ref|YP_002573366.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725] gi|222456331|gb|ACM60593.1| SOS-response transcriptional repressor, LexA [Caldicellulosiruptor bescii DSM 6725] Length = 222 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I + + P+ + GL TS R +G R PS Sbjct: 28 KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 87 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ ++ + P + N T+ Sbjct: 88 EIVD---------------------EEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 126 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + SM DI+I+ GD ++ Sbjct: 127 LPYDLVGTE-------DAFLLRVRGDSMIEAGIFDNDIIIVRRQNVAENGDIVVALID-D 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N V+ D++ + +++ Sbjct: 179 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 216 >gi|71083618|ref|YP_266337.1| LexA repressor [Candidatus Pelagibacter ubique HTCC1062] gi|91761961|ref|ZP_01263926.1| LexA repressor [Candidatus Pelagibacter ubique HTCC1002] gi|123775507|sp|Q4FM55|LEXA_PELUB RecName: Full=LexA repressor gi|71062731|gb|AAZ21734.1| repressor LexA [Candidatus Pelagibacter ubique HTCC1062] gi|91717763|gb|EAS84413.1| LexA repressor [Candidatus Pelagibacter ubique HTCC1002] Length = 225 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 4/223 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K + I++ ++PS K L+ S + R R K Sbjct: 1 MLTKKQKNLLLFINKKLRASGVSPSYEEMKDSLNLKSKSGIHRLISALEERGFIRRLAHK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 A + + + K G G + Sbjct: 61 ARALEVIKLPETASANDIYNSFSPSVIKGGLDTENTNLNEMEIPVLGSIAAGTPVEAIQN 120 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R P Q K Q SM +GD +I+ + + G ++ + Sbjct: 121 EVSRIPLPSNLEKNGQYFGLKVQGDSMIEAGINEGDTVIIKRSDTADNGKIVVALIDEHE 180 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 + K + + G+++ L S N Y ++ + S Sbjct: 181 AMLKRIRRK-GKTVALESANRNYETKIFGPDRVKVQG--VLVS 220 >gi|258542190|ref|YP_003187623.1| LexA repressor [Acetobacter pasteurianus IFO 3283-01] gi|256633268|dbj|BAH99243.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO 3283-01] gi|256636327|dbj|BAI02296.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO 3283-03] gi|256639380|dbj|BAI05342.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO 3283-07] gi|256642436|dbj|BAI08391.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO 3283-22] gi|256645491|dbj|BAI11439.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO 3283-26] gi|256648544|dbj|BAI14485.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO 3283-32] gi|256651597|dbj|BAI17531.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654588|dbj|BAI20515.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO 3283-12] Length = 216 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 55/220 (25%), Gaps = 17/220 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57 M + K+ ID ++ +PS + GL + ++ E Sbjct: 1 MLTRKQHKLLLFIDSHLKQTGFSPSFDEMREAMGLRSKSGIHRLISGLEE---------- 50 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + L++ P + + G G Sbjct: 51 --RGFLRRHHHRARALEVIQLPEMQELPPNVVRASFTRPKAETVRIPLYGRIAAGLPIEA 108 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 V + SM+ GD +I+ Q G ++ Sbjct: 109 VPDTSHVLTVPAEMLGSGDYYALEVAGDSMVDAGILDGDSVIIRRTDQAENGQIVVALID 168 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++ K L + G I L N Y V + Sbjct: 169 EHEVTLKRLRRK-GNMIALEPANSSYETRIVPAEKLRIQG 207 >gi|326622275|gb|EGE28620.1| repressor protein cI [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 232 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 24/232 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + +++ E ++ LA+ +G+ + + G + I + Sbjct: 1 MNIMKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVE 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I A L + P + G Sbjct: 55 IANALGVNSEWLSTGIGPMKKDGTTPINASP----SSNTFKIDILDLEVSAGPGVINREF 110 Query: 121 PEIRSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 EI + SM GD+L ++ +I+ GD + Sbjct: 111 VEILRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGI 170 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCY---PVDTVE-MSDIEWIARIL 219 K L + + ++S N Y + M+ + +++ Sbjct: 171 YAFLYDDTAHVKRLQKMKD-KLLVISDNKSYSAWDPIERDEMNRVFVFGKVI 221 >gi|299137331|ref|ZP_07030513.1| putative phage repressor [Acidobacterium sp. MP5ACTX8] gi|298600736|gb|EFI56892.1| putative phage repressor [Acidobacterium sp. MP5ACTX8] Length = 240 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 18/231 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAAT 65 + E R+ H T GLA + G+ + ++ + + + R ++ L T Sbjct: 2 ENFGERFKRIRTAHGYTQRGLASEIGISGAAISQWESGETQPDKIRAEFLDAAAHKLHTT 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLL----YFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + + S G + ++ + P +G G + Sbjct: 62 VRHLLKGDGVEGSPGSVKVEAFAIHGMVDDEDFDPETGVMIPVYEMDVSGGPGAPILEFA 121 Query: 122 EIRS-------PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 E R + A + + + SM P D ++++ + +RL Sbjct: 122 ETRYKLHFTRKWLKDVKAKPEEIRVARVRGDSMQPTLWDNDKVVIHLGMTRIRNERLFAL 181 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIE---WIARIL 219 G+ K L + ++S N YP + +E D+ I +++ Sbjct: 182 AYAGEARVKRLYQLADGRLRVVSDNPDKAKYPDEFIEGDDLNNVLIIGQVI 232 >gi|229098164|ref|ZP_04229112.1| Phage transcriptional repressor [Bacillus cereus Rock3-29] gi|228685355|gb|EEL39285.1| Phage transcriptional repressor [Bacillus cereus Rock3-29] Length = 223 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 12/226 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M F K + + R+ + + A K GL PT+ +S G+ S +++ K Sbjct: 1 MVKFMEK--AKIVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T L L T +++ + S G G Sbjct: 55 VCKGLGITTDDLEVLTTKGDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEEN 114 Query: 121 PEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E P + + + + TSM + G +++ V G ++K D Sbjct: 115 IEGYLPMLSTFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYD 174 Query: 180 IVAKVLISRRGRSIDLMSL--NCCYPVDTVE--MSDIEWIARILWA 221 K + G I L+ L + + T + D++ I R++ A Sbjct: 175 ATVKKISK-SGSIITLIPLSNHPIHEPQTYDLSAEDVKIIGRVVQA 219 >gi|145636817|ref|ZP_01792482.1| transcriptional activator-regulatory protein [Haemophilus influenzae PittHH] gi|145269898|gb|EDK09836.1| transcriptional activator-regulatory protein [Haemophilus influenzae PittHH] Length = 225 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 14/224 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S E + + ++ + LAR G+ S K + + Sbjct: 1 MATLS-----ERLTSLMYEKGISQAELARLIGIKQPSVFKILSGETRNPKKILEIATALN 55 Query: 61 ILAA---TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + T E I +L S G + PT + Sbjct: 56 VDPHWLKTGEGDPDPSYRIVEVSEPQNPNTVRIDILDVEVSAGNGAYL---SPTEQGLLS 112 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 A + SM P GD+L ++ + D L + Sbjct: 113 QEFDLTFFRQQFGRADAKHLKLITVKGDSMAPTLESGDLLYVDVSENYFSADGLYVFTFD 172 Query: 178 GDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD-IEWIARIL 219 K L R GR + +S N Y ++ D + R++ Sbjct: 173 DHTFIKRLQKR-GREMWAISDNKEEYKEWEIKQDDPVFIHGRVV 215 >gi|9633604|ref|NP_050962.1| P1 [Acyrthosiphon pisum bacteriophage APSE-1] gi|6118052|gb|AAF04000.1|AF157835_57 P1 [Endosymbiont phage APSE-1] Length = 260 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 83/232 (35%), Gaps = 32/232 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + K+ + I ++ + + + L+R+ G+ + ++ G + P + I Sbjct: 29 MGMMT-AKLNKNIKKLMAEKGVKSVAELSRRIGMPQPTLHRML----SGEVKSPRLKIIQ 83 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG----------------GF 103 KI +LL + + + + + G+ Sbjct: 84 KIADFFRVEANELLYKDLITSHISIENKTKAYERVEVNAIPFNFCKVPVLGTTQLGGGGY 143 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 ++ G+ + + P + Q SM+P + G+ +++ Sbjct: 144 WNPKESSAGHDYGYIIWPTE----------DRDAFALRCQGESMMPRIQHGEFVVMEPNY 193 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + GD +L++ G ++ K + +R + L+S+N +P + + IE I Sbjct: 194 KYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAVPTIEKI 245 >gi|86138839|ref|ZP_01057411.1| LexA repressor [Roseobacter sp. MED193] gi|85824486|gb|EAQ44689.1| LexA repressor [Roseobacter sp. MED193] Length = 238 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + I R ++ + PS K LD S + R R Sbjct: 1 MLTKKQLDLLNFIHRRLQKDGVPPSFDEMKVALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATN----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 I ++ + Q + + G Sbjct: 61 ARAIEILRLPENMGGVPAPSANQTTAAGAFSPASARPPSTPRSTPAASVLAALEIPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSP-HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 G + + + + + + + SM+ GDI+++ + Sbjct: 121 IAAGVPIEAINQITHQIAIPQTMLSSNGKHYALEVRGDSMINAGINDGDIVVIRETDTAD 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K L R +I L + N Y + + ++ R++ Sbjct: 181 DGDIVVALIADEEATLKRLFRR-NGAIALEAENPAYETRVLSPNQVKVQGRLV 232 >gi|134295270|ref|YP_001119005.1| putative phage repressor [Burkholderia vietnamiensis G4] gi|134138427|gb|ABO54170.1| putative phage repressor [Burkholderia vietnamiensis G4] Length = 238 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 16/227 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + I L+ LA GL S + ++ EG P + + K+ A Sbjct: 10 DDIHKRIKAKRLEKGLSMQQLATAVGLKGWQSVQQWEKPDDEGGT-APRRDKLQKVADAL 68 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 T L + + + F G Sbjct: 69 GVTAEWLQFGA---PAPENRDQARQVVHLRDEVEIPRFDARASMGPGAIIPENDTIVEFV 125 Query: 126 PHNGI--------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + SM + GD+L +++ + D + + Sbjct: 126 RVTKSWIREALPTFTSMSNLALMPAHGDSMEESFSDGDLLWIDTGVCEVKIDAVYVLALN 185 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 + K L R SI ++S N Y +E + + R+++A Sbjct: 186 DQLYVKRLQRRPDGSILMISDNKKYEPYLIENGERQRFRVLGRVIFA 232 >gi|293409515|ref|ZP_06653091.1| conserved hypothetical protein [Escherichia coli B354] gi|222032902|emb|CAP75642.1| phage-related repressor protein [Escherichia coli LF82] gi|281178259|dbj|BAI54589.1| phage transcriptional regulator [Escherichia coli SE15] gi|291469983|gb|EFF12467.1| conserved hypothetical protein [Escherichia coli B354] Length = 230 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 23/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ E+ ++ LA+ +G+ + + G + I +I Sbjct: 1 MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L ++ K P G E+ Sbjct: 55 ALGVRTEWLSSGIGPMRNDGQQLGKPTAN---HPKYFKIDVLDIEVSAGPGVINREFVEV 111 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + SM GD+L ++ ++ GD + Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219 >gi|77462544|ref|YP_352048.1| LexA repressor [Rhodobacter sphaeroides 2.4.1] gi|332557429|ref|ZP_08411751.1| LexA repressor [Rhodobacter sphaeroides WS8N] gi|6685608|sp|Q9ZFA4|LEXA_RHOS4 RecName: Full=LexA repressor gi|4185550|gb|AAD09122.1| LexA repressor [Rhodobacter sphaeroides] gi|77386962|gb|ABA78147.1| LexA repressor [Rhodobacter sphaeroides 2.4.1] gi|332275141|gb|EGJ20456.1| LexA repressor [Rhodobacter sphaeroides WS8N] Length = 228 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 5/223 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ + I +R + PS K LD S + R R Sbjct: 1 MLTRKQMELLDFIKTRMDRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + + + +G+ G G + Sbjct: 61 ARAIEIVKLPEAMERAGFSARAAKAAAAPLPKGAVTVETAGALDLPLMGRIAAGLPIEAI 120 Query: 119 -GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 G P+ + + + + Q + + SM+ GDI+++ + GD ++ Sbjct: 121 NGGPQSVTVPGMMLSGRGQHYALEVKGDSMIAAGINDGDIVVIREQQTADNGDIVVALVA 180 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R G I L N Y ++ R++ Sbjct: 181 DHEATLKRYRRR-GGMIALEPANDSYETQVYPEQMVKVQGRLV 222 >gi|319776198|ref|YP_004138686.1| putative phage repressor [Haemophilus influenzae F3047] gi|301168972|emb|CBW28569.1| unnamed protein product [Haemophilus influenzae 10810] gi|317450789|emb|CBY87011.1| Putative phage repressor [Haemophilus influenzae F3047] Length = 219 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 73/222 (32%), Gaps = 24/222 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I + I + LT +A G+ + ++ + + P++E++ + Sbjct: 1 MKSETIGKRIRQRRTELKLTQKDVANAIKGVSHVAISQWESDTTK-----PNSENLVDLS 55 Query: 63 AATNETICQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + S+ ++PL+ + +G+ D TG+ Sbjct: 56 TVLECDLLWLLRGEGSSSNVMPASIGTNKVPLISYVQAGTWTGIDDLKESTGDFNYIYTF 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + SM P ++ GD++I++ I+ G+ + + Sbjct: 116 IDTSD----------DAFALEIKGDSMEPDFKAGDVIIIDPRIEPRAGEFVAAINGDYEA 165 Query: 181 VAKVLISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIA 216 K +L+ LN YP + +I I Sbjct: 166 TFKKYRPIGDIDELGRHHFELVPLNSDYPTLSSLKQEIRIIG 207 >gi|325529755|gb|EGD06606.1| putative phage repressor [Burkholderia sp. TJI49] Length = 212 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 28/207 (13%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS----- 78 LA AG+ + ++ +G+ + E I L+ Sbjct: 9 QVELADAAGVTKGTVSQWL----DGKIKSIKLEYAVGIQKRYGYNPVWLVMGEGEKKLGT 64 Query: 79 ----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 + + + +PL+ +G FP G + + + Sbjct: 65 PGYANVTPAQVGSRRVPLISSVQAGRMTEAVD-PFPPGGAFEYL---------LTDLDLS 114 Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR--- 191 + + SM P + GD +I++ AIQ GD ++ K + K +R Sbjct: 115 DYAFALEIEGLSMAPDFNPGDRIIIDPAIQPRPGDFVVAKNGREEATFKKYRARGVGADG 174 Query: 192 --SIDLMSLNCCYPVDTVEMSDIEWIA 216 + +L+ LN YP + E + I Sbjct: 175 REAFELIPLNPDYPTISSEHERVRIIG 201 >gi|237731126|ref|ZP_04561607.1| P22 repressor protein c2 [Citrobacter sp. 30_2] gi|226906665|gb|EEH92583.1| P22 repressor protein c2 [Citrobacter sp. 30_2] Length = 208 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 24/218 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + I + + L + G+ + ++ P ES+ K+ N Sbjct: 2 ETVGQRIKALRRVTKTSQKELGKFCGVSDVAVGYWEKDINV-----PGGESLSKLAKYFN 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + K + IP++ + +G + E+ Sbjct: 57 TS-IDYILYGTEFEGNLITKMRRIPVISWVQAGQFTECKAAEV----------FSEVDKW 105 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDI 180 I + + SM LP +G +I++ + G ++ + T + Sbjct: 106 VETSLRIGDSAFALEVKGDSMTNPNGLPTIPEGATVIVDPDAEPLHGKIVVARLDGTNEA 165 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ + L+ LN YP ++ + + I + Sbjct: 166 TVKKLVIDGPQKF-LVPLNPRYPNISINGNCL-IIGVV 201 >gi|221140342|ref|ZP_03564835.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus str. JKD6009] gi|296277216|ref|ZP_06859723.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus MR1] gi|302333665|gb|ADL23858.1| phage transcriptional regulator [Staphylococcus aureus subsp. aureus JKD6159] gi|329314675|gb|AEB89088.1| Phage transcriptional regulator [Staphylococcus aureus subsp. aureus T0131] Length = 235 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 76/246 (30%), Gaps = 39/246 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+SFS ++R+ + +++ S LA ++ T+ + ++ R P + + + Sbjct: 1 MSSFS-----SNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGI-----RSPKLDKLPE 50 Query: 61 ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-- 110 I L+ + + ++ +L + + + Sbjct: 51 IANVFGVKPLDLIHDMDDSKIIEEIHNVSSQLTPPRQSNVLKYATNQLEEQNNDSDNLVD 110 Query: 111 ----------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 E S + D K SM PL++ G Sbjct: 111 FNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNG 170 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213 I+ + + + G + GD K + + L+SLN Y + + Sbjct: 171 QIIFIEKSHTIKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLHFYDNESVR 228 Query: 214 WIARIL 219 + +++ Sbjct: 229 LVGKVI 234 >gi|15676805|ref|NP_273950.1| transcriptional regulator [Neisseria meningitidis MC58] gi|121634684|ref|YP_974929.1| transcriptional regulator [Neisseria meningitidis FAM18] gi|254804773|ref|YP_003082994.1| putative phage repressor protein [Neisseria meningitidis alpha14] gi|7226147|gb|AAF41318.1| transcriptional regulator [Neisseria meningitidis MC58] gi|120866390|emb|CAM10133.1| Transcriptional regulator [Neisseria meningitidis FAM18] gi|254668315|emb|CBA05285.1| putative phage repressor protein [Neisseria meningitidis alpha14] gi|308389079|gb|ADO31399.1| Transcriptional regulator [Neisseria meningitidis alpha710] gi|325132324|gb|EGC55017.1| peptidase, S24 family [Neisseria meningitidis M6190] gi|325144297|gb|EGC66602.1| peptidase, S24 family [Neisseria meningitidis M01-240013] gi|325202301|gb|ADY97755.1| peptidase, S24 family [Neisseria meningitidis M01-240149] Length = 238 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 25/241 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGR---------- 49 MT H+ + + +A+ L P+ +A + + + + GI + Sbjct: 1 MTM--HET-TDRLFEIAKEQGVLKPADIAERLNISQQALKNWESRGIAAKALPEVAKAFG 57 Query: 50 --NRWPSTESIFK-----ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 W T + I + + + + + Y S G Sbjct: 58 VSETWLRTGEGSRTAPVLIDPDLPHEVKDIHRPMTWSSNDPLPDDDYVFVPYLKESCFKG 117 Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 + P N + +P +S SM + + +++ Sbjct: 118 GVGTYEIPDYNGY---RLPFGKSTLKRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTG 174 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWA 221 ++ + G K LI + G S+ + S N Y + + + I R+ W Sbjct: 175 ETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYGDENAPLDSLTVIGRVFWW 234 Query: 222 S 222 S Sbjct: 235 S 235 >gi|24374516|ref|NP_718559.1| prophage LambdaSo, Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] gi|24349105|gb|AAN56003.1|AE015737_1 prophage LambdaSo, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] Length = 272 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 74/260 (28%), Gaps = 46/260 (17%) Query: 7 KKIWEAIDRMAERHNL-TPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIFKILAA 64 KK+ I R+ + + + + LA G S + E++ K+L Sbjct: 8 KKVGRNIKRLRLKAGIKSQAALAELCGWKSQSRVGNYEAGTRAVS--AIDAETLAKVLNV 65 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-------------SGSGGFFDSGVFPT 111 T I + D + + + F+ T Sbjct: 66 TPAEILYGENNKDDDFVSMPSAQYSSGPYEEEDPFQLFKPKQELQNAEWHAGFELWDGDT 125 Query: 112 GNKWNTVGVPEIR-------------------------SPHNGIYAIQTQDTRHKTQDTS 146 + + V +P R S + S Sbjct: 126 PLRDDEVALPFYREVELAAGSGSTFVQENGGCKLRFAKSTLKKSRVEPSNAACVTVSGNS 185 Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVD 205 MLP+ R G + ++++ + + G + K+L G I + S N +P + Sbjct: 186 MLPVLRHGTTVGVDTSKKSIIDGEMYAIDHDGMLRVKMLYRTPGGGIRIKSYNNDEFPDE 245 Query: 206 TVEMS---DIEWIARILWAS 222 + DI+ I + W S Sbjct: 246 FIPPEKASDIKIIGWVFWWS 265 >gi|284025046|ref|ZP_06379444.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus 132] Length = 235 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 76/246 (30%), Gaps = 39/246 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+SFS ++R+ + +++ S LA ++ T+ + ++ R P + + + Sbjct: 1 MSSFS-----SNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGI-----RSPKLDKLPE 50 Query: 61 ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-- 110 I L+ + + ++ +L + + + Sbjct: 51 IANVFGVKPLDLIHDMNDSKIIEEIHNVSSQLTPPRQSNVLKYATNQLEEQNNDSDNLVD 110 Query: 111 ----------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 E S + D K SM PL++ G Sbjct: 111 FNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNG 170 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213 I+ + + + G + GD K + + L+SLN Y + + Sbjct: 171 QIIFIEKSHTIKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLHFYDNESVR 228 Query: 214 WIARIL 219 + +++ Sbjct: 229 LVGKVI 234 >gi|229117182|ref|ZP_04246561.1| Phage transcriptional repressor [Bacillus cereus Rock1-3] gi|228666350|gb|EEL21813.1| Phage transcriptional repressor [Bacillus cereus Rock1-3] Length = 223 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 76/226 (33%), Gaps = 12/226 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M F K + + R+ + + A K GL PT+ +S G+ S +++ K Sbjct: 1 MVKFMEK--AKIVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T L L T +++ + S G G Sbjct: 55 VCKGLGITTDDLEVLTTKGDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEEN 114 Query: 121 PEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E P + + + + TSM + G +++ V G ++K D Sbjct: 115 IEGYLPMLSTFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYD 174 Query: 180 IVAKVLISRRGRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 K + G I L+ L N + T + D++ I R++ A Sbjct: 175 ATVKKISK-SGSIITLIPLSNDPIHEPQTYDLSAEDVKIIGRVVQA 219 >gi|226940092|ref|YP_002795165.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] gi|226715018|gb|ACO74156.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] Length = 242 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 24/232 (10%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I I +A+R+ L+ A AG+ S + + P ++ ++ Sbjct: 13 EEEIGTRIRVVADRY-LSRQAAADAAGVSLISLRRYINGEV-----HPPFATLARLALPQ 66 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFP------PSGSGGFFDSGVFPTGNK-WNTV 118 ++ L T P L S G W Sbjct: 67 GVSLHWLATGEGEQDEKTAAAAVPCPCLDTLGNPVDLEEFVFIPRYSVRAAAGCGQWPED 126 Query: 119 GVPEIRSPHNGIY------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 P + A + + SM + D++++N A + G + Sbjct: 127 ESPRFSMAFRRYWVENYLRANPDELSVIAVDGDSMEGVLNDRDVILVNHADRDPRGSIYV 186 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220 ++ G +V K + G +++ S N Y TVE+ D + I R++W Sbjct: 187 LRID-GHLVVKQVQRLPGGILEVSSSNPAYKPFTVELGKVGDDFDVIGRVVW 237 >gi|284008034|emb|CBA74134.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 232 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 22/230 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + + +T L ++ G+ + ++ + E + + S+ K L T E + Sbjct: 4 ERIRQARNHNKMTQESLGKRIGVSKATISQWESGTTEPNGK--NLVSLAKALGVTIEWLL 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGNKWNTVGVPEI 123 + + + + G FF G V + Sbjct: 62 DGDEKNAEVNAQLANAKIIGNFAPWDSNTPLGEDEIELPFFKEISLSAGKGS-FVTLDNN 120 Query: 124 RSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 Y+ SM P+ G ++ + ++ Sbjct: 121 GYKLRFAYSTLRKAGVDPANAACVSITGNSMEPVVPDGATAGIDRSDTNIKDGQMYAIEH 180 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV---EMSDIEWIARILWAS 222 G + K+L G I + S N Y + ++S+I+ + ++ W S Sbjct: 181 EGMLRVKILYRIPGG-IRIRSYNRDEYADEDYIGSDISNIKIMGKVFWYS 229 >gi|315143625|gb|EFT87641.1| peptidase S24-like domain protein [Enterococcus faecalis TX2141] Length = 228 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 72/229 (31%), Gaps = 27/229 (11%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---------------------GRNR 51 I + ++ +T + LA K G+ ++ ++ + + G Sbjct: 4 ITDLRKQKKMTSTELAEKVGIAKSAMSRYENRTRQFPVNKISDFAKALETSPEYLLGFEE 63 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 P ++ + KI + + + EK+ + + Sbjct: 64 EPLSQILTKINETSAKLETKRQKNVLIF---AEKELDKQNFETESRNRKVVPLVGKTAAN 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + H+ + + D Q SM PL + G I+ V G+ Sbjct: 121 PAVLEYGDI--DVEQHSFAHVPEGADCAINIQGDSMEPLIKDGSIVFYKKQCDVENGEIA 178 Query: 172 LIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +++ + K +I + I L S+N Y +E I I +++ Sbjct: 179 IVEIDNDGVTCKKVIKDYSNKQIILRSINTKYEDRILENEKIRIIGKVI 227 >gi|149915046|ref|ZP_01903575.1| putative phage repressor [Roseobacter sp. AzwK-3b] gi|149811234|gb|EDM71071.1| putative phage repressor [Roseobacter sp. AzwK-3b] Length = 220 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 8/208 (3%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 ER N++ + +ARKAG+ + KR G+ + S E KI A + + Sbjct: 14 LERQNVSVAEIARKAGVPYDAVRDIKR----GKVQSTSWERAVKIAQALGIDLEDVSPAT 69 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 + E ++ + D V ++ P A Sbjct: 70 SKTKQVIEPASSKLQAMVSVYDVYASAGDGAVVIHEEPIGSLAFPANYLR-QLTQANWRD 128 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISRR-GRSID 194 + SMLP D+++L+ + + D L + G+ + K + + Sbjct: 129 LAIISVKGDSMLPTLADDDVVMLDRSKRDLSYDGLFVIRDNGEALLVKRIQRAPTPGHVM 188 Query: 195 LMSLNCC-YPVDTVEMSDIEWIARILWA 221 ++S N Y ++SDIE I R++WA Sbjct: 189 IISDNRALYDPVEKKLSDIEVIGRVIWA 216 >gi|296504207|ref|YP_003665907.1| LexA repressor [Bacillus thuringiensis BMB171] gi|296325259|gb|ADH08187.1| LexA repressor [Bacillus thuringiensis BMB171] Length = 219 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + + A K GL PT+ +S G+ S +++ K+ T Sbjct: 5 EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L L + T +++ + S G G E P Sbjct: 61 DLERLTTQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 120 Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + TSM + G +++ V G ++K D K + Sbjct: 121 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 179 Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 G I L+ L N + T + D++ I R++ A Sbjct: 180 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 215 >gi|149914774|ref|ZP_01903304.1| LexA repressor [Roseobacter sp. AzwK-3b] gi|149811567|gb|EDM71402.1| LexA repressor [Roseobacter sp. AzwK-3b] Length = 233 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 61/229 (26%), Gaps = 12/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLAFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + P + S G G Sbjct: 61 ARALEIVKLPESLGGEAS-HGFTPRVIEGDKPSAPQPANSYGVDASDVIDVPMMGRIAAG 119 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + G + + + + SM GD++I+ + GD Sbjct: 120 VPIEAIAHASHNVTVPGSMLSGKGVHYALEVRGDSMIEAGINDGDVVIIRETNTADNGDI 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R G +I L + N Y + ++ R++ Sbjct: 180 VVALVEDQEATLKKFYRR-GNAIALEAANPAYETRVLPEDQVKVQGRLV 227 >gi|38229113|ref|NP_938208.1| c repressor [Pseudomonas phage D3112] gi|579180|emb|CAA36500.1| putative repressor [Pseudomonas phage D3112] gi|37595164|gb|AAQ94439.1| c repressor [Pseudomonas phage D3112] Length = 240 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 22/230 (9%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +F+ + + I +A + + LA++ G+ T + + E + I Sbjct: 20 PTFTQE-VGTRIAEVARLLD-SRRALAKQVGIHETQLYRYIKGINAAAP-----ELLSAI 72 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---- 117 A ++ L++ + E + G G+ T Sbjct: 73 AKAGRVSLDWLINGEEVAAKPVEGAKS------IEGEYVYIPLYDGQVSAGHGSWTDGAT 126 Query: 118 --VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 V + R + + + SM PL GD ++++ + + Sbjct: 127 VLVNLAFTRYSLRKKGLDPSSISAIRIGGDSMEPLLCDGDTVLVDHTKSTVQDAAVYVVR 186 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWAS 222 + AK L R S+ ++S N Y V +SD+E I R++WAS Sbjct: 187 LDDHLYAKRLQRRFDGSVSIISENKAYTEMIVPKAKLSDLEIIGRVVWAS 236 >gi|256843106|ref|ZP_05548594.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256614526|gb|EEU19727.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] Length = 209 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 75/222 (33%), Gaps = 18/222 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S++++ + ++ + + +++ + LAR+ GL +S ++ + R + Sbjct: 1 MRSNEEVVDYVNELRKSQHMSINELARETGLAKSSLSRYFN-----KTRGFPVNKVNLFA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + ++L + ++ + ++ + + + G + + T E Sbjct: 56 KALHVKPEEILGIQPTNMKPIDQTGMHAIRIPIIGTIACGTPILAEQNI-DGYTTELFEE 114 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIV 181 K Q SM P G + + V + ++ + Sbjct: 115 KPD---------GTLFALKCQGDSMEPKIPNGATVTVRLQPTVEDDEIAAVLVDDDEEAT 165 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILWAS 222 K + G+ + LM N Y + + + +++ S Sbjct: 166 LKRV-KHVGKQVMLMPENKKYDPILLNEENPGRILGKVVKVS 206 >gi|254421027|ref|ZP_05034751.1| LexA repressor [Brevundimonas sp. BAL3] gi|196187204|gb|EDX82180.1| LexA repressor [Brevundimonas sp. BAL3] Length = 233 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 60/227 (26%), Gaps = 9/227 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + ++PS K LD S + R R Sbjct: 1 MLTRKQHELLMFIHERIQETGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPF-----SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + L T P P + + G G Sbjct: 61 ARALEVTKLPEQATAGAPRGRAGFKPDVIEGGGGAPRPAAVSAANDTRELPLLGKIAAGT 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + R + + + SM GD++++ N G+ ++ Sbjct: 121 PIAAIQHEQERLSVPESMLGKGDHYLLEIEGDSMIEAGILNGDLVVIRRGDTANNGEIVV 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + G SI L N Y +E +++ Sbjct: 181 ALVEGEEATLKRLRRK-GGSIALEPANRNYETRIFGPDQVEVQGKLV 226 >gi|288818209|ref|YP_003432557.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] gi|288787609|dbj|BAI69356.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] Length = 235 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 69/220 (31%), Gaps = 15/220 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + L+ + G + + ++ ++ I + Sbjct: 11 NIHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQ-----IPDTALKLIASTFGV 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT----VGVPEI 123 + L + +EI V G + + V + Sbjct: 66 SYEWLKTGQGEMWGREKLSLEEIIEREQRKLLESKIKVPVVGKAGAGFPHSPSDIEVIGV 125 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGD 179 Y + + + SM P +GD ++ + + G ++++ +G+ Sbjct: 126 VFVSKSPYLKEGKIFAVQVSGDSMHPALTEGDYVVFQTYEGDGSDIPNGKIVVVRNHSGE 185 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K L+ ++ L N YP + ++ E + RI+ Sbjct: 186 LLVKRLLKM-NGTVLLAGDNPKYPPIFPQQAEAEGL-RIV 223 >gi|229151903|ref|ZP_04280100.1| Phage transcriptional repressor [Bacillus cereus m1550] gi|229191824|ref|ZP_04318797.1| Phage transcriptional repressor [Bacillus cereus ATCC 10876] gi|228591648|gb|EEK49494.1| Phage transcriptional repressor [Bacillus cereus ATCC 10876] gi|228631559|gb|EEK88191.1| Phage transcriptional repressor [Bacillus cereus m1550] Length = 223 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + + A K GL PT+ +S G+ S +++ K+ T Sbjct: 9 EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L L + T +++ + S G G E P Sbjct: 65 DLERLATQEDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEENIEGYLPMLST 124 Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + TSM + G +++ V G ++K D K + Sbjct: 125 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 183 Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 G I L+ L N + T + D++ I R++ A Sbjct: 184 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219 >gi|293402168|ref|ZP_06646306.1| LexA repressor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304275|gb|EFE45526.1| LexA repressor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 213 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 18/210 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ E L+ +++ G+ TSF+ +R + PS + + + N I Sbjct: 11 NRLMKILEEKGLSSYQVSKDTGISQTSFSDWRR-----KKSSPSFKKLKILADYLNVDIE 65 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + + + KE +I + F +G F + + +P+ N Sbjct: 66 YLGGVTDERIKKPDIKEHQIQIPLFARLS----CGTGSFVDEDIIEYISLPDTILKPNKE 121 Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 Y + + SM+ GD+L+ ++ G + V K + Sbjct: 122 Y------FANYAKGDSMIGAGINDGDLLVFEKTNVLDNGSIGAFCVDNEEAVCKRIRKSE 175 Query: 190 GRSIDLMSLNCCYPVDTVEMSD--IEWIAR 217 I L+ N Y +++ D + + Sbjct: 176 QGLIMLLPANEKYDPIIIDVKDTCFRIVGK 205 >gi|226328528|ref|ZP_03804046.1| hypothetical protein PROPEN_02422 [Proteus penneri ATCC 35198] gi|225203261|gb|EEG85615.1| hypothetical protein PROPEN_02422 [Proteus penneri ATCC 35198] Length = 239 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 5/203 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + N+ L+ + G+ + + R E + K + +T + Sbjct: 22 KRLTQRMKEVNVDIRQLSEQVGVSYEMARRYTLGTA--KPRDDKMELVAKTVFSTPAYLD 79 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + L K + + S G+ P ++ +P+ R Sbjct: 80 YGIGLETDPKNEFNKDTAIVRQIEVFASAGNGY---VNNPFPEVVRSIEIPQERVYELFG 136 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + SM P D+L +++ I GD + I K L +G Sbjct: 137 RSNLDGVMIINVDGDSMTPTLNPKDLLFIDTKINQFNGDGIYIFNFEDSTFIKRLQRVKG 196 Query: 191 RSIDLMSLNCCYPVDTVEMSDIE 213 R + ++S N YP ++ +I Sbjct: 197 RKLAVISDNDFYPPFFIDDHEIH 219 >gi|171742503|ref|ZP_02918310.1| hypothetical protein BIFDEN_01615 [Bifidobacterium dentium ATCC 27678] gi|171278117|gb|EDT45778.1| hypothetical protein BIFDEN_01615 [Bifidobacterium dentium ATCC 27678] Length = 244 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +K+ +AI + PS + AGL P+S ++ + +G R + + Sbjct: 31 QRKVLDAIKTHLAQRGFAPSFREIGEAAGLKSPSSVKHQLQVLEEKGFIRMSANKGRAIE 90 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + T + I + P + + + + +P Sbjct: 91 VVDLEGPASGNGVAEVIPFPTGVDSSESIMASHDVPLVGRIAAGVPITAEQHIDDVMRLP 150 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ GD +++ GD + + Sbjct: 151 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQHTAENGDIVAALLD-DEA 202 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L+ N Y + + E + +++ Sbjct: 203 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 238 >gi|218551631|ref|YP_002385423.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] gi|218359173|emb|CAQ91836.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] Length = 208 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 24/218 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + I + + L + G+ + ++ P E++ K+ N Sbjct: 2 ETVGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINV-----PGGEALSKLAKFFN 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + +P++ + +G + E+ Sbjct: 57 TS-IDYILYGAEFEGKLVTNMRRVPVISWVQAGQFTECRAAEV----------FSEVDKW 105 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDI 180 + I + + SM LP +G +I++ + G ++ + T + Sbjct: 106 VDTSLKIGDNSFALEVKGDSMTNPNGLPTIPEGATVIVDPDAEPRHGKIVIARLDGTNEA 165 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ + L+ LN YP + + + I + Sbjct: 166 TVKKLVIDGPQKF-LVPLNPRYPNIPINGNCL-IIGVV 201 >gi|317154419|ref|YP_004122467.1| peptidase S24/S26A/S26B [Desulfovibrio aespoeensis Aspo-2] gi|316944670|gb|ADU63721.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio aespoeensis Aspo-2] Length = 223 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 13/212 (6%) Query: 15 RMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 R+ ++ + S LAR+ + + + SKR G RW S L + Sbjct: 17 RLCSETDIASQSQLARELEVGRAAVSLSKRKGTVP-PRWILDLSARFGLNPLWLEKGKGA 75 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + + EIP + GG F++ G G Sbjct: 76 VRAEAACDPADTPYHEIPKVRARLCAGGGSFET----EGQVEGYYSFRSDWLRSRG---N 128 Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM P ++GD+++++ A + ++ K + + Sbjct: 129 PANMVLMEVVGNSMEPEIKEGDMVLIDQARCDILSGSIYAVGVEDTVMVKRVERLP-GIL 187 Query: 194 DLMSLNCCYPVDTVEMSD---IEWIARILWAS 222 L S N Y + + + I +ILW S Sbjct: 188 VLRSDNMDYSPIHLSGDELNNVRVIGKILWTS 219 >gi|228909524|ref|ZP_04073348.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 200] gi|228850115|gb|EEM94945.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 200] Length = 223 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + + A K GL PT+ +S G+ S +++ K+ T Sbjct: 9 EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L L + T +++ + S G G E P Sbjct: 65 DLERLATQEDNTVKEEVSIYETIQKDQSNIIHIPIIGSVAAGTPIFAEENIEGYLPMLST 124 Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + TSM + G +++ V G ++K D K + Sbjct: 125 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 183 Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 G I L+ L N + T + D++ I R++ A Sbjct: 184 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219 >gi|114705892|ref|ZP_01438795.1| LexA repressor [Fulvimarina pelagi HTCC2506] gi|114538738|gb|EAU41859.1| LexA repressor [Fulvimarina pelagi HTCC2506] Length = 238 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 62/233 (26%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ + ID + PS K L+ S + R R + Sbjct: 1 MLTRKQHELLKFIDARLNETGVPPSFDEMKDALELKSKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATN----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG------- 107 + L + + + + + + G + Sbjct: 61 ARALEVLKLPDAMRRPEPQQPAQRGFKPSVIEGSKGQPPKPRGASDEGAANENVSIPVMG 120 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166 G + + + + + + SM GD +++ + Sbjct: 121 RIAAGVPISAIQHNTHSISIPPDMIMGGEHYALEVKGDSMIEAGILDGDTVVIRRSETAV 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + K ++G +I L + N Y + +++ Sbjct: 181 PGEIVVALVDDEEATLKRF-RKKGDTIALEAANPAYETRIFGADRVRVQGKLV 232 >gi|228959912|ref|ZP_04121578.1| Phage transcriptional repressor [Bacillus thuringiensis serovar pakistani str. T13001] gi|229128978|ref|ZP_04257952.1| Phage transcriptional repressor [Bacillus cereus BDRD-Cer4] gi|229146271|ref|ZP_04274645.1| Phage transcriptional repressor [Bacillus cereus BDRD-ST24] gi|228637190|gb|EEK93646.1| Phage transcriptional repressor [Bacillus cereus BDRD-ST24] gi|228654476|gb|EEL10340.1| Phage transcriptional repressor [Bacillus cereus BDRD-Cer4] gi|228799764|gb|EEM46715.1| Phage transcriptional repressor [Bacillus thuringiensis serovar pakistani str. T13001] Length = 223 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + + A K GL PT+ +S G+ S +++ K+ T Sbjct: 9 EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L L + T +++ + S G G E P Sbjct: 65 DLERLATQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 124 Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + TSM + G +++ V G ++K D K + Sbjct: 125 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 183 Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 G I L+ L N + T + D++ I R++ A Sbjct: 184 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219 >gi|30021801|ref|NP_833432.1| LexA repressor [Bacillus cereus ATCC 14579] gi|29897357|gb|AAP10633.1| LexA repressor [Bacillus cereus ATCC 14579] Length = 219 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + + A K GL PT+ +S G+ S +++ K+ T Sbjct: 5 EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L L + T +++ + S G G E P Sbjct: 61 DLERLATQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 120 Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + TSM + G +++ V G ++K D K + Sbjct: 121 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 179 Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 G I L+ L N + T + D++ I R++ A Sbjct: 180 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 215 >gi|85058275|ref|YP_453977.1| hypothetical protein SG0297 [Sodalis glossinidius str. 'morsitans'] gi|84778795|dbj|BAE73572.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans'] Length = 232 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 83/224 (37%), Gaps = 25/224 (11%) Query: 4 FSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K+ I+ + + + + L+R+ G+ + ++ ++ R ++I K Sbjct: 3 LGTEKLKRNINSLMSNKQVKSVAELSRRIGMPQPTLHRMLNGEVK-SPRLAVVQNIAKFF 61 Query: 63 A-------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 N ++ + ++P+L G GG++D + Sbjct: 62 NVEANDLLYKDLTLKDNHQPKEIPQTEIFPDKPIPLAFTKVPMLGTAQLGGGGYWDLQEY 121 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 G V P K Q SM+P + G+ +++ GD Sbjct: 122 AVGQGDGYVLWPTK----------DKDAFALKCQGDSMMPRIQHGEFVVVEPNRGYKPGD 171 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 +L++ G+++ K+ + ++ ++L+S+N + ++ I+ Sbjct: 172 EVLVQDEQGEVMIKIFLFQKDGIVNLLSVNSKHAPTRLDAHTIK 215 >gi|312127456|ref|YP_003992330.1| transcriptional repressor, lexa family [Caldicellulosiruptor hydrothermalis 108] gi|312793672|ref|YP_004026595.1| transcriptional repressor, lexa family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875826|ref|ZP_07735816.1| transcriptional repressor, LexA family [Caldicellulosiruptor lactoaceticus 6A] gi|311777475|gb|ADQ06961.1| transcriptional repressor, LexA family [Caldicellulosiruptor hydrothermalis 108] gi|311797307|gb|EFR13646.1| transcriptional repressor, LexA family [Caldicellulosiruptor lactoaceticus 6A] gi|312180812|gb|ADQ40982.1| transcriptional repressor, LexA family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 202 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I + + P+ + GL TS R +G R PS Sbjct: 8 KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ + + P + N T+ Sbjct: 68 EIVD---------------------DEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + SM DI+I+ GD ++ Sbjct: 107 LPYDLVGTE-------DAFLLRVRGDSMIEAGIFDNDIIIVRRQNVAENGDIVVALID-D 158 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N V+ D++ + +++ Sbjct: 159 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 196 >gi|254455849|ref|ZP_05069278.1| LexA repressor [Candidatus Pelagibacter sp. HTCC7211] gi|207082851|gb|EDZ60277.1| LexA repressor [Candidatus Pelagibacter sp. HTCC7211] Length = 225 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 61/223 (27%), Gaps = 4/223 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K + I++ ++PS K L+ S + R R K Sbjct: 1 MLTKKQKNLLLFINKKLRSSGVSPSYEEMKQSLNLKSKSGIHRLISALEERGFIKRLAHK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 A + + + K S G G + Sbjct: 61 ARALEVIKLPETASANDIYNSFSPSVIKGGLDEVNINSDEIEVPVLGKIAAGTPVEAIQN 120 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R P K Q SM +GD +I+ + G ++ + Sbjct: 121 EVSRIPLPNNLEKNGDYFGLKVQGDSMIEAGINEGDTVIIKRTDTADNGKIVVALIDEHE 180 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 + K + ++G+ + L S N Y ++ + S Sbjct: 181 AMLKRI-RKKGKVVALESANRNYETKIFGPDRVKVQG--VLVS 220 >gi|26006818|sp|Q9A724|LEXA_CAUCR RecName: Full=LexA repressor Length = 234 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 14/230 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-- 50 M + ++ I + ++PS LA K+G+ + G R Sbjct: 1 MLTRKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHR-LITALEERGFIRRLAH 59 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R + E + AT + + S G Sbjct: 60 RARALEVVKLPQQATAAAPPKGRGAFRPQVFEGGGAPPPAASPAAAANDSRELPILGRIA 119 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169 G + + R P + + Q SM GD +I+ G+ Sbjct: 120 AGTPIDAIQHERERLPVPEAMLGAGEHYVLEVQGDSMIEAGILDGDYVIIKKGDTATSGE 179 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K L ++G SI L + N Y +E +++ Sbjct: 180 IVVAL-VGEEATLKRL-RKKGGSIALEAANPKYETRIFGPDQVEVQGKLV 227 >gi|315655235|ref|ZP_07908136.1| LexA repressor [Mobiluncus curtisii ATCC 51333] gi|315490490|gb|EFU80114.1| LexA repressor [Mobiluncus curtisii ATCC 51333] Length = 306 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 63/220 (28%), Gaps = 12/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 +++ + R++++ PS LA GL S K + + R P+T + Sbjct: 87 QQEVLTTLYRLSQKLAYPPSVRELAEAMGLSSPSSVKHHLDVLTQKGYLRRAPNTPRALE 146 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + G + IP+ + + G G + Sbjct: 147 FVKLP--EGLETPSPDPVSGTSQSATITTIPVGIADTAVATPVPLVGQIAAGAPITAEEM 204 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E + + + SM GD +++ + G+ + G+ Sbjct: 205 VEDTFALPRRFTGSGELFMLAVKGDSMQEGGILDGDWVVVRHQNEARNGEIVAAMLD-GE 263 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + +++ Sbjct: 264 ATVKEFSR-ADGHVWLLPHNENYAPI--PGDTATILGKVV 300 >gi|310815580|ref|YP_003963544.1| LexA repressor [Ketogulonicigenium vulgare Y25] gi|308754315|gb|ADO42244.1| LexA repressor [Ketogulonicigenium vulgare Y25] Length = 221 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 6/220 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ E ID+ + + PS K LD S + R R I + Sbjct: 1 MLTRKQLELLEFIDQRVKATGVPPSFEEMKEALDLKSKSGIHRLITALEERGF----IRR 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + ++ ++ + G G + Sbjct: 57 LAHRARALEVVRMPEMTAHKPAAAARKPQLVASALNTLAAIEVDVMGRIAAGVPIAAISE 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + Q SM+ + GDI+++ A + GD ++ + Sbjct: 117 VSHQVAVPQGMIGTGNHYALEVQGDSMIGIGINDGDIVVIRHADLASNGDIVVALVDEAE 176 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L + N Y + + + +++ Sbjct: 177 ATLKRFRRQ-NGMIALEAANPAYETRLLPEARVRVQGKLV 215 >gi|167032201|ref|YP_001667432.1| putative phage repressor [Pseudomonas putida GB-1] gi|166858689|gb|ABY97096.1| putative phage repressor [Pseudomonas putida GB-1] Length = 234 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 12/223 (5%) Query: 11 EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNET 68 I + + ++ A LD + ++ + G + E + A + Sbjct: 6 RRIASLRKIMGTMSQKEFAEAHDLDASYLSQLLNGHRKLGEKAALNLELKIGLTAGMLTS 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + F S + + V + H Sbjct: 66 PPSESPTHKAPDNVVHLSARAGKDKNFILIPHLDIAASMGHGKAAPYMHIEVIRDMTVHL 125 Query: 129 GIYAIQT-------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 +Q SM + GD L+++ I D + + GD+ Sbjct: 126 DWLRMQGLTFSKVDNLAIISGNGDSMTGTFADGDALLVDRGITEVKTDAIYVFTLDGDLY 185 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARILWA 221 K L G + ++S N YP T+++ + AR+L A Sbjct: 186 IKRLQRLTGGQLRMISDNPIYPPITIDLSMIDRMHIQARVLLA 228 >gi|302871708|ref|YP_003840344.1| transcriptional repressor, LexA family [Caldicellulosiruptor obsidiansis OB47] gi|302574567|gb|ADL42358.1| transcriptional repressor, LexA family [Caldicellulosiruptor obsidiansis OB47] Length = 202 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I + + P+ + GL TS R +G R PS Sbjct: 8 KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ + + P + N T+ Sbjct: 68 EIVD---------------------DEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + SM DI+I+ GD ++ Sbjct: 107 LPYDLVGTE-------DAFLLRVRGDSMIEAGIYDNDIIIVRRQNVAENGDIVVALID-D 158 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N V+ D++ + +++ Sbjct: 159 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 196 >gi|9635682|ref|NP_061595.1| repressor [Staphylococcus prophage phiPV83] gi|8918752|dbj|BAA97812.1| repressor [Staphylococcus prophage phiPV83] gi|298694365|gb|ADI97587.1| putative phage repressor [Staphylococcus aureus subsp. aureus ED133] Length = 236 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 76/247 (30%), Gaps = 40/247 (16%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+SFS ++R+ + +++ S LA ++ T+ + ++ R P + + + Sbjct: 1 MSSFS-----SNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGI-----RSPKLDKLPE 50 Query: 61 ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-- 110 I L+ + + ++ +L + + + Sbjct: 51 IANVFGVKPLDLIHDMDDSKIIEEIHNVSSQLTPPRQSNVLKYATNQLEEQNNDSDDNLV 110 Query: 111 -----------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 E S + D K SM PL++ Sbjct: 111 DFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKN 170 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDI 212 G I+ + + + G + GD K + + L+SLN Y + + Sbjct: 171 GQIIFIEKSHTIKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLHFYDNESV 228 Query: 213 EWIARIL 219 + +++ Sbjct: 229 RLVGKVI 235 >gi|312622282|ref|YP_004023895.1| transcriptional repressor, lexa family [Caldicellulosiruptor kronotskyensis 2002] gi|312202749|gb|ADQ46076.1| transcriptional repressor, LexA family [Caldicellulosiruptor kronotskyensis 2002] Length = 202 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I + + P+ + GL TS R +G R PS Sbjct: 8 KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ ++ + P + N T+ Sbjct: 68 EIVD---------------------EEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + SM DI+I+ GD ++ Sbjct: 107 LPYDLVGTE-------DAFLLRVRGDSMIEAGIFDNDIIIVRRQNVAENGDIVVALID-D 158 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N V+ D++ + +++ Sbjct: 159 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 196 >gi|330814024|ref|YP_004358263.1| SOS-response repressor and protease LexA [Candidatus Pelagibacter sp. IMCC9063] gi|327487119|gb|AEA81524.1| SOS-response repressor and protease LexA [Candidatus Pelagibacter sp. IMCC9063] Length = 208 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 45/201 (22%), Gaps = 3/201 (1%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 + ++PS + L S + R R + + A Sbjct: 1 MKSDGVSPSYDEMRKSLSLKSKSGIHRLISALEERGF-IKRLAHKARALEVVKLPENASV 59 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 + L + G G + P Sbjct: 60 KDLFNNFTPSLIKGGLDDVKKTKENFIPLIGKIAAGLPIEAIEEHHEDIPCPPGTKNPDD 119 Query: 137 DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 K + SM+ GD +I+ G ++ + K + +I L Sbjct: 120 FYALKVEGDSMIDAGIHDGDTVIIKKTSTAENGKIVVALIDNHEATLKRYRKKSN-AIAL 178 Query: 196 MSLNCCYPVDTVEMSDIEWIA 216 S N Y I+ Sbjct: 179 ESANPAYETRIFGPERIKIQG 199 >gi|83311965|ref|YP_422229.1| LexA repressor [Magnetospirillum magneticum AMB-1] gi|123740455|sp|Q2W3A5|LEXA_MAGMM RecName: Full=LexA repressor gi|82946806|dbj|BAE51670.1| LexA repressor [Magnetospirillum magneticum AMB-1] Length = 235 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 58/230 (25%), Gaps = 12/230 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ ID ++PS K LD S + R R Sbjct: 1 MLTRKQYELLMFIDERLRATGISPSFDEMKDALDLKSKSGIHRLITGLEERGFIRRLAHR 60 Query: 59 FKILA--ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------ 110 + L E P + + + G DS P Sbjct: 61 ARALEVVRLPENRNDQTLPPPAKAFAPNVIKGGFAASQLAGAPVAGPSDSVTLPLYGKIA 120 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169 G + SM GD +++ S G Sbjct: 121 AGTPIEALRDHSNSVDIPASMLGSGNHYALTVDGDSMIEAGINDGDTVVIRSCDSAETGT 180 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ ++ K L + G S+ L N Y + ++ R++ Sbjct: 181 IVVALVDDTEVTLKRLRRK-GTSVALEPANKAYETRVLPPDRVKVQGRLV 229 >gi|167465660|ref|ZP_02330749.1| LexA repressor [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382028|ref|ZP_08055972.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154007|gb|EFX46343.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 205 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 37/227 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 M S ++ I E I + PS + GL ++ + +R +G R P Sbjct: 1 MGKLSQRQQAILEFIKNEVKEKGYPPSVREIGEAVGLASSSTVHGHLERLEKKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL + + P + T N Sbjct: 61 TKPRAIEILDMDSSSTFSFSVTR-------------------VPLIGKVTAGMPITATEN 101 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + +P Y SM GD++I+ + GD ++ Sbjct: 102 IEDYFPLPSH-------YVGDHNVFMLSVLGDSMIETGIHDGDLVIVRQQQTADNGDIVV 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N + + + +++ Sbjct: 155 AMTEDDEATVKRFYKEKD-HIRLQPENSSMAPIILSN--VSILGKVI 198 >gi|152989242|ref|YP_001346150.1| transcriptional regulator PrtR [Pseudomonas aeruginosa PA7] gi|150964400|gb|ABR86425.1| transcriptional regulator PrtR [Pseudomonas aeruginosa PA7] Length = 256 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + NL LA AG+ + +K + ST + +I AA + Sbjct: 14 ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117 L + + + L P + G Sbjct: 68 WLQTGEGAPAARSPVPVADGSPLVLEPLHPWDSETPLDEDEVELPLYKEVEMSAGAGRTA 127 Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 V E R YA + + SM PL G + +++A Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222 + G + K + G I L S N YP + D I I + W S Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244 >gi|194430884|ref|ZP_03063221.1| repressor protein C2 [Escherichia coli B171] gi|194411072|gb|EDX27557.1| repressor protein C2 [Escherichia coli B171] gi|324014358|gb|EGB83577.1| helix-turn-helix protein [Escherichia coli MS 60-1] Length = 207 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 21/211 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNE 67 + +T +A AG+ S + GR R P + + K L + Sbjct: 3 LAARFKARRLELGMTQVEVANSAGVSQQSIESIE----SGRTRKPRNLLDLAKALKCSP- 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L + E + IP+L + +G TG + + Sbjct: 58 ---DWLLNGKNIMPLAEISTRRIPILSYVQAGELTEARDITDLTGE-FEYILADSD---- 109 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 I + SM P +++GDI+I++ + G+ ++ K + K Sbjct: 110 -----IPETCFALRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNDGHEATFKKYRP 164 Query: 188 RRGRS--IDLMSLNCCYPVDTVEMSDIEWIA 216 +L+ LN YP+ +++ I Sbjct: 165 LGIGIDDFELIPLNPDYPIFRSADMNLQIIG 195 >gi|228922414|ref|ZP_04085718.1| Phage transcriptional repressor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837239|gb|EEM82576.1| Phage transcriptional repressor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 223 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + + A K GL PT+ +S G+ S +++ K+ T Sbjct: 9 EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L L +G T +++ + S G G E P Sbjct: 65 DLERLATQEGNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 124 Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + TSM + G +++ V G ++K D K + Sbjct: 125 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 183 Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 G I L+ L N + T + D++ I R++ A Sbjct: 184 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219 >gi|225023311|ref|ZP_03712503.1| hypothetical protein EIKCOROL_00164 [Eikenella corrodens ATCC 23834] gi|224943956|gb|EEG25165.1| hypothetical protein EIKCOROL_00164 [Eikenella corrodens ATCC 23834] Length = 211 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 68/218 (31%), Gaps = 25/218 (11%) Query: 17 AERHNLTPS---GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + L+ S A K G++ ++ K+ G+ E KI T ++ L+ Sbjct: 4 RAKLALSASSDKDFAHKLGINASTVVGYKQRGVVP------LEQCIKIAEQTGVSLDWLI 57 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + T + ++ P F N + + A Sbjct: 58 LGKGESDKNTAAGKATPSVVLVPLYDVPVSAGHGSFFDAENVIQQIPFDAEWLEREDLIA 117 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 Q + SM P + DI++++ + GD + + G + K L Sbjct: 118 --GQLACLPIEGDSMSPGLKTSDIVLVD--LTHQRGDGVFVLRLNGALRIKRLQWLADGR 173 Query: 193 IDLMSLNCCYPVDTVE----MSDIEW-------IARIL 219 + + S N Y + V+ D I R++ Sbjct: 174 LRISSDNPIYETEYVDPNTPPDDFAIIGFCHTKIGRVV 211 >gi|323699001|ref|ZP_08110913.1| putative phage repressor [Desulfovibrio sp. ND132] gi|323458933|gb|EGB14798.1| putative phage repressor [Desulfovibrio desulfuricans ND132] Length = 220 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 R+ + S LAR+ + + + +KR G RW S L Sbjct: 7 AFFKRLCSETEIRNQSQLARELDVGRAAVSLAKRKGAVP-ARWILDLSARFGLNPLWLEQ 65 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + P + + + + G G Sbjct: 66 GKGFPRPEAALAAAAEDGASYAEIPKVRARLCAGGG-SFETEGQVEGYYSFRSDWLTRRG 124 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + SM P ++GD+++++ + + ++ K + Sbjct: 125 ---NPANMVLMEVIGNSMEPEIKEGDMVLIDQSRTDVLSGGIYAVGVEDTVMVKRVERLP 181 Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARILWAS 222 ++ L S N Y + + + I ++LWAS Sbjct: 182 -GTLVLRSDNVDYSPVHLSGDELDNVRVIGQVLWAS 216 >gi|33600663|ref|NP_888223.1| putative phage repressor [Bordetella bronchiseptica RB50] gi|33568263|emb|CAE32175.1| putative phage repressor [Bordetella bronchiseptica RB50] Length = 227 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 17/224 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M++ E + ++ S LAR+ + + + G + + +++ Sbjct: 1 MSTLQ-----ERLRDALADAQISQSELARRVKVSRGAISLWL----TGATKELTADNLLA 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 A L ++ P + + + +G Sbjct: 52 AAQALGVNPVWLGSGKGPKRSGEVAEQPYFDNNVAPAAAGSRRVPLINYVQAGELTEIGA 111 Query: 121 PEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + SM P ++ GD +I++ I GD ++ + Sbjct: 112 AFSGEAVEYLLTDMNLSQHAFALEITGLSMYPDFKPGDRIIVDQEICPQPGDFVVARNGG 171 Query: 178 GDIVAKVLISR-----RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + K R +L+ LN YP + + I Sbjct: 172 YEATFKKYRPRGLDANGNDVFELVPLNDDYPTLYSDRELLTIIG 215 >gi|153001771|ref|YP_001367452.1| putative phage repressor [Shewanella baltica OS185] gi|151366389|gb|ABS09389.1| putative phage repressor [Shewanella baltica OS185] Length = 241 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 24/241 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + + + T + L G+ S K + + I K+L Sbjct: 1 MNKNESFADRLRTAMDEAGYTQASLGEAIGMAQPSVWKLTTGKTKNTRK---LYEIAKVL 57 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLY------------FPPSGSGGFFDSGVFP 110 + E + + + +++ + F F Sbjct: 58 RVSPEWLLNGREPKKMGEQPNRQQQIPEKEEWGTLDAWDDSTPINSDEVEVPFLRDVEFA 117 Query: 111 TGNK----WNT----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 G+ + + + G + + SM P G + +N+ Sbjct: 118 CGDGTFNDEDYNGFKLRFSKSTLRKVGANTDGSGVICFPARGNSMEPYIPDGTTVAVNTN 177 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWA 221 + ++ G KVL ++++S N Y + +E I R+ W Sbjct: 178 DKKIVDGKIYAINENGWKRIKVLRRSSPDKLNILSFNSDEYEPEDKPAESVEIIGRVFWY 237 Query: 222 S 222 S Sbjct: 238 S 238 >gi|71901484|ref|ZP_00683571.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] gi|71728740|gb|EAO30884.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] Length = 336 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 15/222 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + +T S +A + + + KR G + + + + K+ Sbjct: 107 RFIAALGKNREVTQSAIATFCNVSEQAVSGWKRTGRIDKKHFAALSTALKV--PLEYWYG 164 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVG----VPEI 123 + + + P + G V +P Sbjct: 165 EAYGAERVGIDVRRIRAVDGEEGTDPETDVMIPVYDLEVSGGPGCTVPEYVETRYKLPFQ 224 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + A K + +SM + +GD +++++ + D + G+ K Sbjct: 225 INWLRTWDAKPNDILIAKVRGSSMEDVLYEGDKVVIHTKRRRIRNDAVYALVYGGEARIK 284 Query: 184 VLISRRGRSIDLMSLNCC---YPVDTVEMS---DIEWIARIL 219 L S+ ++S N +P + V+ + I +++ Sbjct: 285 RLFVMADGSLRIVSHNPDKGRFPDEVVQPDNLEQVSIIGQVI 326 >gi|16126145|ref|NP_420709.1| LexA repressor [Caulobacter crescentus CB15] gi|221234916|ref|YP_002517352.1| LexA repressor [Caulobacter crescentus NA1000] gi|13423353|gb|AAK23877.1| repressor LexA [Caulobacter crescentus CB15] gi|220964088|gb|ACL95444.1| LexA repressor [Caulobacter crescentus NA1000] Length = 245 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 14/230 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-- 50 M + ++ I + ++PS LA K+G+ + G R Sbjct: 12 MLTRKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHR-LITALEERGFIRRLAH 70 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R + E + AT + + S G Sbjct: 71 RARALEVVKLPQQATAAAPPKGRGAFRPQVFEGGGAPPPAASPAAAANDSRELPILGRIA 130 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169 G + + R P + + Q SM GD +I+ G+ Sbjct: 131 AGTPIDAIQHERERLPVPEAMLGAGEHYVLEVQGDSMIEAGILDGDYVIIKKGDTATSGE 190 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K L ++G SI L + N Y +E +++ Sbjct: 191 IVVAL-VGEEATLKRL-RKKGGSIALEAANPKYETRIFGPDQVEVQGKLV 238 >gi|148255849|ref|YP_001240434.1| LexA repressor [Bradyrhizobium sp. BTAi1] gi|166224555|sp|A5EK34|LEXA_BRASB RecName: Full=LexA repressor gi|146408022|gb|ABQ36528.1| SOS-response transcriptional repressor, LexA [Bradyrhizobium sp. BTAi1] Length = 232 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 60/227 (26%), Gaps = 9/227 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I+ + + PS K LD S + R R + Sbjct: 1 MLTRKQYELLRFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-----FDSGVFPTGN 113 + + + + + P+ G G G Sbjct: 61 ARAIEVIKLPELSQAASNRRGFTPSVIEGNLGKVRTSTPALDDGERPVAVPVMGRIAAGT 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + SM+ GD+ ++ + GD ++ Sbjct: 121 PIEALQTRSHTISVPADMLGNGDHYALEVRGDSMVDAGILDGDMALIQRNETADTGDIVV 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R SI L N Y V + + ++ +++ Sbjct: 181 ALIDDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVKIQGKLV 226 >gi|167755401|ref|ZP_02427528.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|237733631|ref|ZP_04564112.1| SOS-response transcriptional repressor [Mollicutes bacterium D7] gi|167704340|gb|EDS18919.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|229383229|gb|EEO33320.1| SOS-response transcriptional repressor [Coprobacillus sp. D7] Length = 206 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 22/213 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++ + LT L G+ ++ K + R ++I K+ + Sbjct: 3 GERIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENN----RVENLKKDTIQKLSEIFDVPA 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + S+ G F N + +PE + Sbjct: 59 SYFLGIDESNQPIITDSITIPLYSDIS--CGTGLFVDD-----NVDEYISLPETLLSPSK 111 Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 Y SM+ +GD+++ + Q+ G+ K Sbjct: 112 EY------FCQYADGDSMINENINQGDLIVFEKSNQIRNGEVGCFTIDDNVATCKKFYRD 165 Query: 189 RGRS-IDLMSLNCCYPVDTVEMSD---IEWIAR 217 I L N Y + I + Sbjct: 166 DNNHCIILQPANPEYTPIVINQESQAGFRVIGK 198 >gi|146341049|ref|YP_001206097.1| LexA repressor [Bradyrhizobium sp. ORS278] gi|166224556|sp|A4YVE6|LEXA_BRASO RecName: Full=LexA repressor gi|146193855|emb|CAL77872.1| SOS response transcriptional repressor, lexA [Bradyrhizobium sp. ORS278] Length = 232 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 60/227 (26%), Gaps = 9/227 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I+ + + PS K LD S + R R + Sbjct: 1 MLTRKQYELLRFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-----FDSGVFPTGN 113 + + + + + P+ G G G Sbjct: 61 ARAIEVIKLPELSQAAGNRRGFTPSVIEGNLGKVRTSTPALEDGERPVAVPVMGRIAAGT 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + SM+ GD+ ++ + GD ++ Sbjct: 121 PIEALQTRSHTISVPADMLGNGDHYALEVRGDSMVDAGILDGDMALIQRNETADTGDIVV 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R SI L N Y V + + ++ +++ Sbjct: 181 ALIDDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVKIQGKLV 226 >gi|295689577|ref|YP_003593270.1| LexA family transcriptional repressor [Caulobacter segnis ATCC 21756] gi|295431480|gb|ADG10652.1| transcriptional repressor, LexA family [Caulobacter segnis ATCC 21756] Length = 232 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 10/227 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ I + ++PS K LD S + R R + Sbjct: 1 MLTRKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-------GVFPTGN 113 A + Q + + PP + + G G Sbjct: 61 ARALEVVKLPQQATTAAPPKGRGAFRPQVFEGGGTPPPAATAPANDSRELPILGRIAAGT 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + R P + + Q SM GD +I+ G+ ++ Sbjct: 121 PIDAIQHERERLPVPEAMLGGGEHYVLEVQGDSMIEAGILDGDYVIIKKGDTATSGEIVV 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L ++G SI L + N Y +E +++ Sbjct: 181 AL-VGEEATLKRL-RKKGGSIALEAANPKYETRIFGPDQVEVQGKLV 225 >gi|257056735|ref|YP_003134567.1| SOS-response transcriptional repressor, LexA [Saccharomonospora viridis DSM 43017] gi|256586607|gb|ACU97740.1| SOS-response transcriptional repressor, LexA [Saccharomonospora viridis DSM 43017] Length = 235 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 23/219 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNRWPSTESIFKI 61 +K+ E I +++ PS + GL TS ++ K +G R Sbjct: 29 QQKVLEVIRTWVDKYGYPPSVREIGEAVGLTSTSSVSHQLKALQRKGYLR-------RDA 81 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + L T+ E+ +P F P V + + +P Sbjct: 82 NRPRAVGVLALDSEHPIPPTTSATAERSMPQPAFVPLVGRIAAGKPVLAEESIEDVYPLP 141 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + SM+ GD +++ GD + G+ Sbjct: 142 KDIVG-------EGDVFLLSVTGDSMIDAAITDGDWVVVRQQPTAENGDIVAAMID-GEA 193 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L+ N Y D + +++ Sbjct: 194 TVKTFKRK-DGHIWLVPQNEAYEPI--PGDDATILGKVV 229 >gi|325292754|ref|YP_004278618.1| LexA repressor [Agrobacterium sp. H13-3] gi|325060607|gb|ADY64298.1| LexA repressor [Agrobacterium sp. H13-3] Length = 240 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 66/234 (28%), Gaps = 16/234 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ A S + K K P + + + P Sbjct: 61 ARALEVIKLPEAYTPGARPQRGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVM 120 Query: 113 NKWNTVGVPEIRSPHNGIYAIQ------TQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165 + + A+ + + + SM GD +I+ + Sbjct: 121 GRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDSMIEAGIFDGDTVIIRNGNTA 180 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 NPGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGKLV 233 >gi|288920758|ref|ZP_06415058.1| SOS-response transcriptional repressor, LexA [Frankia sp. EUN1f] gi|288347834|gb|EFC82111.1| SOS-response transcriptional repressor, LexA [Frankia sp. EUN1f] Length = 249 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 20/225 (8%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTE 56 + ++ I E I E+ PS + GL TS ++ K +G R P+ Sbjct: 30 LTQRQKGILEVIRAAVEQRGYPPSVREIGEAVGLTSTSSVAHQLKVLQEKGFLRRDPNRP 89 Query: 57 SIFKILAATNETICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++L + L E + P + Sbjct: 90 RAMEVLPIGGQKAGARLRSAGGRPAEVGGAVAAEAGTPTYVPLIGRIAAGGPILAEQAVE 149 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + +P + K SM+ GD +++ + G+ + Sbjct: 150 DVYPLPREIVG-------EGTLFLLKVVGQSMINAAICDGDYVVVRQQPVADNGEIVAAM 202 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K +R + L N + D + RI+ Sbjct: 203 ID-GEATVKRF-RQRDGRVWLAPENPAFSDI--PAEDATILGRIV 243 >gi|87200045|ref|YP_497302.1| LexA repressor [Novosphingobium aromaticivorans DSM 12444] gi|123763475|sp|Q2G6Q5|LEXA_NOVAD RecName: Full=LexA repressor gi|87135726|gb|ABD26468.1| SOS-response transcriptional repressor, LexA [Novosphingobium aromaticivorans DSM 12444] Length = 234 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 56/227 (24%), Gaps = 12/227 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--R 51 M + ++ I E ++PS + L S + + G R R Sbjct: 1 MLTRKQHELLTFIQTRLEDSGISPSFEEMKEALDLKSKSGVHRLISALEERGFIRRLPNR 60 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + E + + +A + + P + G Sbjct: 61 ARALEVLRQPDSAVGKAAPVSQREAANTNSALPPLRAAPKAAPAPANDVIELPLHGKIAA 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 G + P + + SM GD ++ G+ Sbjct: 121 GVPIEALETTATL-PVPAALLGAGEHYALEVSGDSMVEAGIFDGDYALVRKTDVARDGEI 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++ R + K L + + L N Y ++ + Sbjct: 180 VVALVRGEEATLKYLHREK-GMVRLDPANAAYDPQYYRPEEVAVQGK 225 >gi|148261865|ref|YP_001235992.1| LexA repressor [Acidiphilium cryptum JF-5] gi|326405370|ref|YP_004285452.1| LexA repressor [Acidiphilium multivorum AIU301] gi|166224548|sp|A5G2J1|LEXA_ACICJ RecName: Full=LexA repressor gi|146403546|gb|ABQ32073.1| SOS-response transcriptional repressor, LexA [Acidiphilium cryptum JF-5] gi|325052232|dbj|BAJ82570.1| LexA repressor [Acidiphilium multivorum AIU301] Length = 231 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 60/226 (26%), Gaps = 8/226 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ ID+ R +PS K LD S + R R + Sbjct: 1 MLTRKQHELLVYIDQHLRRTGCSPSFEEMKEALDLKSKSGIHRLIGALEERGFLRRHKHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKK----EKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + L D P + + + P+ + G G Sbjct: 61 ARALEVLRLPSDAAADRPDTGFAPNVIRGDFTARLQGARAADPAAAITLPLYGRIAAGQP 120 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + + + + SM+ GD I+ G ++ Sbjct: 121 IEALREHQAEIEIPASLVGPGEHYALEVAGDSMVDAGILDGDTAIIRRGETAETGQIVVA 180 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K L R + L N Y + ++ R++ Sbjct: 181 LIDDVEVTLKRLRRRGNST-ALEPANPRYEIRIFPAERVKVQGRLV 225 >gi|163796784|ref|ZP_02190742.1| hypothetical protein BAL199_13618 [alpha proteobacterium BAL199] gi|159178038|gb|EDP62585.1| hypothetical protein BAL199_13618 [alpha proteobacterium BAL199] Length = 222 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 17/224 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + A + + +A A ++ + R GR+ P+ E + KI A Sbjct: 2 QTTLADRLRARARQIGMNAREVAEDARVNRSFVYDIMR----GRSEHPNLEKLDKIAATL 57 Query: 66 NETICQ------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + IP + S GG + G + Sbjct: 58 KVDRNWLLHGKGEIQGDEPLTHKEPDEFISIPSVEVTASMGGGTIVANEVAIGEPY---H 114 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 H + A + SM+P + GD+++++ + + + Sbjct: 115 FKSSWIAHR-LRANPANLRIMHVEGDSMMPTLQDGDVVLVDLGRALPTPPGIFVLFDGMG 173 Query: 180 IVAKVLISRRGR---SIDLMSLNCCYPVDTVEMSDIEWIARILW 220 +VAK L + ++S N Y +I+ I RI W Sbjct: 174 LVAKRLEYIPNSDPPCVRIISDNPFYTPYDRTADEIKIIGRIRW 217 >gi|309802478|ref|ZP_07696584.1| repressor LexA [Bifidobacterium dentium JCVIHMP022] gi|308220878|gb|EFO77184.1| repressor LexA [Bifidobacterium dentium JCVIHMP022] Length = 237 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +K+ +AI + PS + AGL P+S ++ + +G R + + Sbjct: 24 QRKVLDAIKTHLAQRGFAPSFREIGEAAGLKSPSSVKHQLQVLEEKGFIRMSANKGRAIE 83 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + T + I + P + + + + +P Sbjct: 84 VVDPEGPASGNGVAEVIPFPTGVDSSESIMGSHDVPLVGRIAAGVPITAEQHIDDVMRLP 143 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ GD +++ GD + + Sbjct: 144 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQHTAENGDIVAALLD-DEA 195 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L+ N Y + + E + +++ Sbjct: 196 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 231 >gi|307295058|ref|ZP_07574900.1| transcriptional repressor, LexA family [Sphingobium chlorophenolicum L-1] gi|306879532|gb|EFN10750.1| transcriptional repressor, LexA family [Sphingobium chlorophenolicum L-1] Length = 228 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 49/221 (22%), Gaps = 6/221 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + +++ I E ++PS K LD S + R R + Sbjct: 1 MLTPKQQELLSFIQTRLEEGGVSPSFEEMKEALDLRSKSGIHRLINALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNT 117 + L + + G G Sbjct: 61 ARALEVLKLPEAMHRAPKVVAPASAPLATGSAVSKPPVAANDIVEIPMHGRIAAGVPIEA 120 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + + SM GD ++ G ++ Sbjct: 121 LE-GQNMLSVPAALLGTGDHYALEVAGDSMVEAGILDGDFALIQRTDVAREGQIVVALID 179 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K R G+ + L N Y + + + Sbjct: 180 ENEATLKYF-RREGQKVRLDPANGAYEPQYYDPRQVRIQGK 219 >gi|116054339|ref|YP_788784.1| transcriptional regulator PrtR [Pseudomonas aeruginosa UCBPP-PA14] gi|115589560|gb|ABJ15575.1| transcriptional regulator PrtR [Pseudomonas aeruginosa UCBPP-PA14] Length = 256 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + NL LA AG+ + +K + ST + +I AA + Sbjct: 14 ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117 L + + + L P + G Sbjct: 68 WLQTGEGTPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTA 127 Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 V E R YA + + SM PL G + +++A Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222 + G + K + G I L S N YP + D I I + W S Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244 >gi|297584124|ref|YP_003699904.1| LexA family transcriptional repressor [Bacillus selenitireducens MLS10] gi|297142581|gb|ADH99338.1| transcriptional repressor, LexA family [Bacillus selenitireducens MLS10] Length = 207 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 64/226 (28%), Gaps = 33/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M S K I + I + PS + GL ++ + R +G R Sbjct: 1 MKKLSTRQKSILDFIRDQVQARGYPPSVREIGEAVGLASSSTVHGHLSRLEKKGYIRR-- 58 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T +L+ T IP++ +GS N Sbjct: 59 --------DPTKPRAIELIQKDRYGSEITSSPSISIPVVGKVTAGSPIT------AIENV 104 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P + + + SM GD ++++ N GD ++ Sbjct: 105 EEYLPMPVS-------FVQDEESFILEISGDSMIEAGIFNGDFVVVHPQSTANNGDIVVA 157 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + L N + ++ + R++ Sbjct: 158 MTDEDEATVKRFFKEKD-HVRLQPENASLQPIIL--ENVTILGRVI 200 >gi|156974239|ref|YP_001445146.1| hypothetical protein VIBHAR_01954 [Vibrio harveyi ATCC BAA-1116] gi|156525833|gb|ABU70919.1| hypothetical protein VIBHAR_01954 [Vibrio harveyi ATCC BAA-1116] Length = 221 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 70/215 (32%), Gaps = 17/215 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +T + LA G+ ++ +NR PS E++ I+ T Sbjct: 9 VKARMKEVGITQNALAEMMGVSQSAIAHWLN-----KNREPSIENVAAIMKCVGLTHM-- 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNG 129 + + + L P+ F G + + EI H Sbjct: 62 MLDSDGFIDYPDDSVANVKKLDIQPTYQKSFPVLSSVQAGQWHEAIEPYSIEEISEWHPT 121 Query: 130 IYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKV 184 + Q SM + +G ++++++ + G ++ + K Sbjct: 122 TERCSERCFWLTVQGDSMTSPTGFSFPEGTMVLVDTEVDAENGKLVVAKLTDVNEATFKK 181 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G+ L +LN +P+ + + + I ++ Sbjct: 182 FIVDSGQKY-LKALNPAFPILPINGN-CKIIGVVI 214 >gi|220927204|ref|YP_002502506.1| LexA repressor [Methylobacterium nodulans ORS 2060] gi|254809101|sp|B8IN87|LEXA_METNO RecName: Full=LexA repressor gi|219951811|gb|ACL62203.1| SOS-response transcriptional repressor, LexA [Methylobacterium nodulans ORS 2060] Length = 240 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 64/235 (27%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + I + + PS K LD S + R R Sbjct: 1 MLTRKQLDLLRFIQQRMRETGVPPSFDEMKDALDLKSKSGIHRLITALEERGFLRRLPNR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-------GSGGFFD 105 + +I A +++ S P S S Sbjct: 61 ARAIEVIRIPDAVVPPSGEVVRFTPSVVEGGRTAAPAAKAAPMPSSLGSDDNGRSISIPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164 G G + + + + + + + SM GD++++ Sbjct: 121 MGRIAAGTPISAIQSQSRTVAMSPDFLAGGEHYALEVRGDSMIEAGILDGDLVVIRRQDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K L R G SI L + N Y + + R++ Sbjct: 181 ANTGDIVVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGRLV 234 >gi|313111743|ref|ZP_07797536.1| transcriptional regulator PrtR [Pseudomonas aeruginosa 39016] gi|310884038|gb|EFQ42632.1| transcriptional regulator PrtR [Pseudomonas aeruginosa 39016] Length = 256 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + NL LA AG+ + +K + ST + +I AA + Sbjct: 14 ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117 L + + + L P + G Sbjct: 68 WLQTGEGTPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTA 127 Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 V E R YA + + SM PL G + +++A Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222 + G + K + G I L S N YP + D I I + W S Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244 >gi|159037047|ref|YP_001536300.1| LexA family transcriptional regulator [Salinispora arenicola CNS-205] gi|157915882|gb|ABV97309.1| transcriptional repressor, LexA family [Salinispora arenicola CNS-205] Length = 258 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 61/219 (27%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 ++I E I ERH PS + G + P+S + K +G R Sbjct: 57 QRRILEFIRTWVERHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLR---------- 106 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + P D E P + P + + +P Sbjct: 107 --RDPNRPRAVDVRPPGDPLDDEATRSHRPTPAYVPMLGRIAAGGPILAEQAVEDVFPLP 164 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + + SML GD +++ GD + G+ Sbjct: 165 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPTAESGDIVAAMLD-GEA 216 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + LM N + D + R++ Sbjct: 217 TVKTYRRR-DGHVWLMPQNPAFDPI--PGDDATIMGRVV 252 >gi|289675330|ref|ZP_06496220.1| S24 family peptidase [Pseudomonas syringae pv. syringae FF5] Length = 217 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 64/217 (29%), Gaps = 19/217 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + L+ + L+ G+ + + + ++ K L + Sbjct: 5 DRLRARMTELKLSATDLSASIGVSKATITFWRNGTNGATGS--NLMALAKALRCSP---- 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIRSPHNG 129 + E + P+ + G V P+ S Sbjct: 59 ---QWLETGKGEATDSEPSNVAMISQPAQMYSYPVVSWVAAGAWTEAVQPFPDGFSDRYD 115 Query: 130 I--YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182 + Y + + + SM P +G +++++ + V G ++ + + Sbjct: 116 VSDYKAKGAAFWLEVKGDSMTSTSAPSIPEGSQILVDTEVDVRPGKLVIAKLADSNEATF 175 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ G L LN YP D + I ++ Sbjct: 176 KKLVEDGGVRY-LKPLNPAYPTVQCS-DDCKIIGVVV 210 >gi|238855030|ref|ZP_04645359.1| SOS-response transcriptional repressor [Lactobacillus jensenii 269-3] gi|282934070|ref|ZP_06339350.1| SOS-response transcriptional repressor [Lactobacillus jensenii 208-1] gi|238832401|gb|EEQ24709.1| SOS-response transcriptional repressor [Lactobacillus jensenii 269-3] gi|281301872|gb|EFA94136.1| SOS-response transcriptional repressor [Lactobacillus jensenii 208-1] Length = 225 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 60/218 (27%), Gaps = 15/218 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKIL-AA 64 + +A+ ++ +++ + L K G+ + + + + + ++ + Sbjct: 12 NNLAKALKEYRKKQHISQTELGEKLGVSKQTVSYWESKKKSPKMSAVINISNLIGVSVKE 71 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + E P + N + V + Sbjct: 72 LMFGTSDVAYSNEDLSMLHEPNNNYQTNSSIIPILGTIACGEPILAEQNIEDYVSLVP-- 129 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVA 182 + K + SM P G I I+ V G+ +L+ + Sbjct: 130 -------SDDATYFGLKCRGHSMEPTIHDGAIAIIRQQPTVEDGEIAAVLVGEDANEATL 182 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 K + +I L+ N + D I + + + Sbjct: 183 KRV-RHVNNAILLVPDNENFEPILGTKKDPIRIVGKAV 219 >gi|306822416|ref|ZP_07455794.1| repressor LexA [Bifidobacterium dentium ATCC 27679] gi|304553961|gb|EFM41870.1| repressor LexA [Bifidobacterium dentium ATCC 27679] Length = 244 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +K+ +AI + PS + AGL P+S ++ + +G R + + Sbjct: 31 QRKVLDAIKTHLAQRGFAPSFREIGEAAGLKSPSSVKHQLQVLEEKGFIRMSANKGRAIE 90 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + T + I + P + + + + +P Sbjct: 91 VVDPEGPASGNGVAEVIPFPTGVDSSESIMGSHDVPLVGRIAAGVPITAEQHIDDVMRLP 150 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ GD +++ GD + + Sbjct: 151 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQHTAENGDIVAALLD-DEA 202 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L+ N Y + + E + +++ Sbjct: 203 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 238 >gi|291283823|ref|YP_003500641.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str. CB9615] gi|290763696|gb|ADD57657.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str. CB9615] Length = 224 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 21/211 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNE 67 + +T +A AG+ S + GR R P + + K L + Sbjct: 20 LAARFKARRLELGMTQVEVANSAGVSQQSIESIE----SGRTRKPRNLLDLAKALKCSP- 74 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L + E + IP+L + +G TG + + Sbjct: 75 ---DWLLNGKNIMPLAEISTRRIPILSYVQAGELTEARDITDLTGE-FEYILADSD---- 126 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 I + SM P +++GDI+I++ + G+ ++ K + K Sbjct: 127 -----IPETCFALRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNDGHEATFKKYRP 181 Query: 188 RRGRS--IDLMSLNCCYPVDTVEMSDIEWIA 216 +L+ LN YP+ +++ I Sbjct: 182 LGIGIDDFELIPLNPDYPIFRSADMNLQIIG 212 >gi|117928686|ref|YP_873237.1| LexA repressor [Acidothermus cellulolyticus 11B] gi|171460816|sp|A0LUZ1|LEXA_ACIC1 RecName: Full=LexA repressor gi|117649149|gb|ABK53251.1| SOS-response transcriptional repressor, LexA [Acidothermus cellulolyticus 11B] Length = 275 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 11/221 (4%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 ++I + I R PS + GL TS + ++ + R P+ + Sbjct: 53 QRRILDVIRDSVRRRGYPPSMREIGEAVGLTSTSSVAHQLMVLQRKGFLRRDPNRPRAVE 112 Query: 61 I-LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 I A + P +D + ++ P G G Sbjct: 113 IRSAESAVPDASAGHSPAADRAPSARRPPRGPSPIDSNPDVVAVPLVGRIAAGGPALAEQ 172 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + E P + + + SM+ GD +++ GD + G Sbjct: 173 LIEDVVPLPRQLVGEGTLFLLQVKGDSMVDAAICDGDWVVVRQQPVAENGDIVAAMID-G 231 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R I LM N Y + + R++ Sbjct: 232 EATVKTFKRRGA-HIWLMPHNPQYEPI--PGDEATILGRVV 269 >gi|332160963|ref|YP_004297540.1| putative repressor CI from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665193|gb|ADZ41837.1| Putative repressor CI from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862119|emb|CBX72283.1| hypothetical protein YEW_AK02200 [Yersinia enterocolitica W22703] Length = 225 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 82/222 (36%), Gaps = 25/222 (11%) Query: 5 SHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I I + ++ ++ + L++K + ++ ++ G P ++ +I Sbjct: 4 TLQNIQNNIKYLMHKNGISSVTELSQKIKMQQSTMHRLL----TGEVNDPKYGTLKQIAD 59 Query: 64 ATNETICQ----------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 ++ + G E ++IP++ G+GGF++ +P G+ Sbjct: 60 YFRVSVIDLTECNLMDGTAKTVIDVGGDPHEMHFRDIPVVGNAQLGNGGFWNDMEYPIGS 119 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + P + K SM+P ++G+ +I+ GD +L+ Sbjct: 120 GDGFIRWP----------SYDPDAYALKCVGDSMMPRIKEGEFVIIEPGHNYIPGDEVLV 169 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 +++ K + R I L+ +N + + + I Sbjct: 170 VTDKDEVMVKTFLFERDGYIHLLPVNEDHAPIKYPRTAVVKI 211 >gi|294668808|ref|ZP_06733901.1| putative repressor protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309325|gb|EFE50568.1| putative repressor protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 244 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 34/231 (14%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 A+R + S L R+ + + K + G E PST ++ KI A + L Sbjct: 16 AKRLG-SVSELCRRVDVAYPTATKWVKEGAE-----PSTTNLIKIADAAGVNLLWLATGQ 69 Query: 77 FSDGRTTEKKEKEI----------------PLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + K+ + G+ + Sbjct: 70 GAMLKEDSEDGKQPAAYDGDQYAQPVLDTLNRPVDIEEFVFIPRYNVKVAAGHGYIAEDE 129 Query: 121 PEIRSPHNGIYAI-------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + Y I + K SM + GD ++++ + G+ L + Sbjct: 130 KPRFTMAFRKYWIRVHLRTDPKSLSVVKVAGDSMEGILFDGDNVLVDHSRN-QPGNGLYV 188 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILW 220 +++ K + G + + S N Y + ++D +E I +++W Sbjct: 189 LRIGEELIVKRTQTLPGNHLLVSSANEAYQPFELNLADETSGVEIIGKVVW 239 >gi|77457362|ref|YP_346867.1| phage repressor [Pseudomonas fluorescens Pf0-1] gi|77381365|gb|ABA72878.1| putative regulatory protein of cro/cI family [Pseudomonas fluorescens Pf0-1] Length = 270 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 79/248 (31%), Gaps = 33/248 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + ++H ++P+ L R+ G+ ++ ++ G+ PS + I K Sbjct: 24 MRVMQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISK 79 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-----------GSGGFFDSGVF 109 I + QL +++ L S F Sbjct: 80 IAEYFAVSTDQLRGRADVAPAANAGRDELHSELKDISLWDDDTPVDDDEVSVPFLREVEL 139 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAI 163 G+ + E S G +++ + SMLP+ R G + +N+ Sbjct: 140 AAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGK 199 Query: 164 ----QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV-----EMSDIE 213 + GD L G + K L I L S N +P + + I Sbjct: 200 CGIGDIIDGD-LYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYSFQDMQEEQIV 257 Query: 214 WIARILWA 221 + + W Sbjct: 258 ILGHVFWW 265 >gi|15595808|ref|NP_249302.1| transcriptional regulator PrtR [Pseudomonas aeruginosa PAO1] gi|107099597|ref|ZP_01363515.1| hypothetical protein PaerPA_01000610 [Pseudomonas aeruginosa PACS2] gi|218889352|ref|YP_002438216.1| transcriptional regulator PrtR [Pseudomonas aeruginosa LESB58] gi|254243705|ref|ZP_04937027.1| transcriptional regulator PrtR [Pseudomonas aeruginosa 2192] gi|2498811|sp|Q06553|PRTR_PSEAE RecName: Full=HTH-type transcriptional regulator prtR; AltName: Full=Pyocin repressor protein gi|9946485|gb|AAG04000.1|AE004497_7 transcriptional regulator PrtR [Pseudomonas aeruginosa PAO1] gi|286176|dbj|BAA02198.1| negative regulator of pyocin genes [Pseudomonas aeruginosa] gi|5725148|dbj|BAA83146.1| prtR [Pseudomonas aeruginosa] gi|5725181|dbj|BAA83132.1| PRF4 [Pseudomonas aeruginosa] gi|126197083|gb|EAZ61146.1| transcriptional regulator PrtR [Pseudomonas aeruginosa 2192] gi|218769575|emb|CAW25335.1| transcriptional regulator PrtR [Pseudomonas aeruginosa LESB58] Length = 256 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + NL LA AG+ + +K + ST + +I AA + Sbjct: 14 ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117 L + + + L P + G Sbjct: 68 WLQTGEGAPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTA 127 Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 V E R YA + + SM PL G + +++A Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222 + G + K + G I L S N YP + D I I + W S Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244 >gi|329768682|ref|ZP_08260166.1| LexA repressor [Gemella haemolysans M341] gi|328836396|gb|EGF86061.1| LexA repressor [Gemella haemolysans M341] Length = 224 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 24/223 (10%) Query: 11 EAIDRMAERHNLTPSG---LAR------KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 E I+++ + L LA+ + ++ N + K+ Sbjct: 6 ERINQIMKEKRLRQIDVLNLAKPFQEKYNIKFSKSHLSQYVNGKSNPDNEKIFL--LSKV 63 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T + + + E + P + + + VP Sbjct: 64 FGVTEAWLLGYDVHRYERIEEAKINEPQTLQGLKIPVLGTVAAGIPISAVEDILDYEEVP 123 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + Q + + + SM P GD +I+ N GD ++ D Sbjct: 124 QSWEN-------QGEFFGLRIKGDSMKPDINDGDTVIVRQQSTANNGDVVIALVNGDDAT 176 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219 K I L+S N Y + + I R++ Sbjct: 177 CKKFEKLGNG-IMLISNNSEYSPMYFSNEEVLTKPVVIIGRVV 218 >gi|158423825|ref|YP_001525117.1| LexA repressor [Azorhizobium caulinodans ORS 571] gi|172047964|sp|A8I825|LEXA_AZOC5 RecName: Full=LexA repressor gi|158330714|dbj|BAF88199.1| peptidase S24 protein [Azorhizobium caulinodans ORS 571] Length = 236 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 55/231 (23%), Gaps = 13/231 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----------EGR 49 M + + I + + PS K LD S + R R Sbjct: 1 MLTRKQYDLLRFIHERLKETGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 R + A + P+ G Sbjct: 61 ARALEVVRLPDSAAPGLAAARSGGRGFSPSVIEGSLGRVRPVVDDEEPAAVVAVPVMGRI 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168 G+ + + + + + SM GD +++ + G Sbjct: 121 AAGSPISAIQTRSNTLNLPPEMLGTGEHFALEVRGDSMIEAGILDGDTVLIRKCDTADTG 180 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K L + SI L + N Y + R++ Sbjct: 181 DIIVALVDDEEATLKRLRRKGA-SIALEAANPAYETRIFGPDRVRIQGRLV 230 >gi|52080407|ref|YP_079198.1| LexA repressor [Bacillus licheniformis ATCC 14580] gi|52785786|ref|YP_091615.1| LexA repressor [Bacillus licheniformis ATCC 14580] gi|319645635|ref|ZP_07999867.1| LexA repressor [Bacillus sp. BT1B_CT2] gi|59799805|sp|Q65J42|LEXA_BACLD RecName: Full=LexA repressor gi|52003618|gb|AAU23560.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52348288|gb|AAU40922.1| LexA [Bacillus licheniformis ATCC 14580] gi|317392521|gb|EFV73316.1| LexA repressor [Bacillus sp. BT1B_CT2] Length = 207 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 35/227 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++ I I +R PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQLDILRFIKEEVKRKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL T E+ + P + + N Sbjct: 61 TKPRAIEILD------------------TEEEIHIPKNQVVNVPVIGKVTAGTPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +PE +P + SM+ D +I+ N GD ++ Sbjct: 103 IEEYFPLPERLAPP------DEHVFMLEIMGESMIDAGILDQDYVIVKQQNTANNGDIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ + + +++ Sbjct: 157 AMTEDDEATVKRFFKEE-THIRLQPENPTMEPIILQN--VTILGKVI 200 >gi|294010830|ref|YP_003544290.1| repressor LexA [Sphingobium japonicum UT26S] gi|292674160|dbj|BAI95678.1| repressor LexA [Sphingobium japonicum UT26S] Length = 228 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 47/221 (21%), Gaps = 6/221 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + +++ I E ++PS K LD S + R R + Sbjct: 1 MLTPKQQELLSFIQTRLEEGGVSPSFEEMKEALDLRSKSGIHRLINALEERGFIRRLPNR 60 Query: 59 FKILAATN-ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + L + + + G G Sbjct: 61 ARALEVLKLPDAMHRAPKLAVPAKAPLTSGPALSQPPVAANDILEIPLHGRIAAGVPIEA 120 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + + SM GD ++ G ++ Sbjct: 121 LE-GQNMLSVPAALLGTGDHYALEVAGDSMVEAGILDGDFALIQRTDVAREGQIVVALID 179 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K + L N Y + + + Sbjct: 180 ENEATLKYFRREGP-KVRLDPANSAYEPQIYDPRQVRIQGK 219 >gi|297562266|ref|YP_003681240.1| transcriptional repressor, LexA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846714|gb|ADH68734.1| transcriptional repressor, LexA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 239 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 52/224 (23%), Gaps = 25/224 (11%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + + + I R PS + GL S S Sbjct: 29 PKLTARQQSVLNCIQRYVRERGFPPSIREIGEAVGLSSPS----------------SVAH 72 Query: 58 IFKILAATNETICQLLDLPFSD-GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K+L + + + S + G G Sbjct: 73 QLKVLQRKGYLHRDQNRPRAVELRTPGRASGRTLVPEDIDLSRAAAVPLVGRIAAGGPIL 132 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + SM GD++++ N GD + Sbjct: 133 AEESVEDVLALPRQLVGEGRLFMLTVVGDSMTDAAITDGDMVVVRQQQDANNGDIVAALL 192 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + KVL G + LM N Y D + +++ Sbjct: 193 D-EEATVKVLRREEGGHVWLMPRNEAYEPI--NGDDATILGKVV 233 >gi|15802659|ref|NP_288686.1| putative repressor protein CI of prophage CP-933V [Escherichia coli O157:H7 EDL933] gi|12516411|gb|AAG57241.1|AE005443_9 putative repressor protein CI of prophage CP-933V [Escherichia coli O157:H7 str. EDL933] Length = 215 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 28/226 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H+ I E I + E L+ + LA+ G S + E R S + Sbjct: 1 MKTM-HEIIGERIKSLREAKGLSQAQLAKLCGWAAPS----RLGNYELGTRKVSADDALV 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + AA + +++ ++ ++ F +G F + G + + V Sbjct: 56 LGAALGVSPAKIMFGED-----SDAVFRQYEYPLFSSVQAGPFXEVGXYTASDAKAWVPT 110 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174 S + + + SM P + +G +++++ A V GD + Sbjct: 111 TTKASE---------KAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVAS 161 Query: 175 PRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K G S L+ LN Y + S I +++ Sbjct: 162 ANGDSEATFKKYEKDAGVSY-LVPLNPAYRTLDCDHS-CRIIGKVV 205 >gi|75761233|ref|ZP_00741217.1| Phage transcriptional repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898797|ref|YP_002447208.1| LexA repressor [Bacillus cereus G9842] gi|228902202|ref|ZP_04066364.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 4222] gi|74491268|gb|EAO54500.1| Phage transcriptional repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540796|gb|ACK93190.1| LexA repressor [Bacillus cereus G9842] gi|228857437|gb|EEN01935.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 4222] Length = 239 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + + A K GL PT+ +S G+ S +++ K+ T Sbjct: 25 EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 80 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L L + T +++ + S G G E P Sbjct: 81 DLEKLATQEDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEENIEGYLPMLST 140 Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + TSM + G +++ V G ++K D K + Sbjct: 141 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 199 Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 G I L+ L N + T + D++ I R++ A Sbjct: 200 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 235 >gi|320528015|ref|ZP_08029181.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131641|gb|EFW24205.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 229 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 17/219 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 +++ + E H+L+ LA G+ ++ + R P+ E++ I N + Sbjct: 7 KSLKSLREEHHLSQRQLADALGVAYSTIGMYESGQ-----REPNYETLEIIADFFNVDMN 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNG 129 L + + EIPL G+ + P+ Sbjct: 62 -YLLGKSIIKNSYASELTEIPLDNIIFDDYFPLHYWSGLSAGSFEELIEAEPDSVVYVPI 120 Query: 130 IYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAKV 184 + + + K TSM + G I++ I+ + G ++ G K Sbjct: 121 TFQNKKKRLHAFKINGTSMNNVIPDGSIVVSEDNYNNAIKYSDGTIVVAFMD-GTATVKR 179 Query: 185 LISRRGRSIDLMSLNCC--YPVDTVEMS-DIEWIARILW 220 L SI L + + V ++ I +++W Sbjct: 180 LYY-GEDSITLSPDSTDKSHMPIIVPKDKELVIIGKVIW 217 >gi|126737889|ref|ZP_01753619.1| LexA repressor [Roseobacter sp. SK209-2-6] gi|126721282|gb|EBA17986.1| LexA repressor [Roseobacter sp. SK209-2-6] Length = 240 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I R + + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHRRLKADGVPPSFDEMKIALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATN------ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 I ++ + + ++ + + Sbjct: 61 ARAIEILRLPESLGGSADSATSHGFKPEVLNGGRASAPAAAPSASVTTASTPAVLELPVM 120 Query: 107 GVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GDI+++ Sbjct: 121 GRIAAGVPIEAINQVSHQIAIPQAMLSSAGHHYALEVRGDSMIDAGINDGDIVVIRETDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + GD ++ + + K + R +I L + N Y T ++ R++ Sbjct: 181 ADDGDIVVALVQNEEATLKRIFRR-DGAIALEAENPAYETRTYPEDQVQIQGRLV 234 >gi|307942169|ref|ZP_07657520.1| repressor LexA [Roseibium sp. TrichSKD4] gi|307774455|gb|EFO33665.1| repressor LexA [Roseibium sp. TrichSKD4] Length = 239 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 18/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----- 55 M + ++ I+ + + PS K LD S + R R Sbjct: 1 MLTRKQYELLMFINERLKETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 56 ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 ESI L + ++ + + ++ + + Sbjct: 61 ARAMEVVRLPESIAPGLGSPRPRGSFSPEVIEGSLGKPQAEARQPSAP-VVEAQTTEIPV 119 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164 G G + + + + + SM GD +++ + Sbjct: 120 MGRIAAGVPIEAIQTHSHSISVPPELIGKGEHYALEVRGDSMIEAGILDGDTVLIRRSDS 179 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + GD ++ + K L + SI L + N Y + +++ Sbjct: 180 ADSGDIVVALVDDEEATLKRLRKKGA-SIALEAANPAYETRIFGPGRVRVQGKLV 233 >gi|312135294|ref|YP_004002632.1| transcriptional repressor, lexa family [Caldicellulosiruptor owensensis OL] gi|311775345|gb|ADQ04832.1| transcriptional repressor, LexA family [Caldicellulosiruptor owensensis OL] Length = 202 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I + + P+ + GL TS R +G R PS Sbjct: 8 KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ + + P + N T+ Sbjct: 68 EIVD---------------------DEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + SM DI+I+ GD ++ Sbjct: 107 LPYDLVGTE-------DAFLLRVRGDSMIEAGIFDNDIIIVRRQNIAENGDIVVALID-D 158 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N V+ D++ + +++ Sbjct: 159 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 196 >gi|92117275|ref|YP_577004.1| LexA repressor [Nitrobacter hamburgensis X14] gi|123265283|sp|Q1QMK3|LEXA_NITHX RecName: Full=LexA repressor gi|91800169|gb|ABE62544.1| SOS-response transcriptional repressor, LexA [Nitrobacter hamburgensis X14] Length = 233 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 58/228 (25%), Gaps = 10/228 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + ++ I+ + + PS + L + ++ +R I Sbjct: 1 MLTRKQYELLRFINERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ + P K + G G Sbjct: 61 ARAIEVIKLPEVAGNGGGRRGFTPSVIEGNLGKVRPSGGGVVDDAERPVAVPVMGRIAAG 120 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171 + + + + SM GD+ ++ GD + Sbjct: 121 TPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVEAGILDGDMALIQRNETAETGDIV 180 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K R SI L N Y V + + ++ +++ Sbjct: 181 VALIDDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVQIQGKLI 227 >gi|254237175|ref|ZP_04930498.1| transcriptional regulator PrtR [Pseudomonas aeruginosa C3719] gi|296387119|ref|ZP_06876618.1| transcriptional regulator PrtR [Pseudomonas aeruginosa PAb1] gi|126169106|gb|EAZ54617.1| transcriptional regulator PrtR [Pseudomonas aeruginosa C3719] Length = 256 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + NL LA AG+ + +K + ST + +I AA + Sbjct: 14 ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117 L + + + L P + G Sbjct: 68 WLQTGEGAPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTA 127 Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 V E R YA + + SM PL G + +++A Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222 + G + K + G I L S N YP + D I I + W S Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244 >gi|284007338|emb|CBA72703.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 232 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 88/232 (37%), Gaps = 32/232 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + + + I + + + + + L+R+ G+ + ++ G + P E + Sbjct: 1 MGMGTQ-NLNKNIKILMDEKGVKSVAELSRRIGMPQPTLHRMLN----GEVKSPRLEIVQ 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEI----------------PLLYFPPSGSGGF 103 KI +LL S +E+++ P+L G GG+ Sbjct: 56 KIANFFRVEANELLYKDLSTTNISEERDTTSFTRIELNAIPFNFCKVPVLGTTQLGGGGY 115 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 ++S + + + P + Q SM+P + G+ +++ Sbjct: 116 WNSKESSIEHDYGYIVWPTE----------DKDAFALRCQGESMMPRIQHGEFVVMEPNY 165 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + GD +L++ G ++ K + +R I L+S+N +P + S I+ I Sbjct: 166 KYKPGDEVLVQDDNGQVMVKTFLYQRDDVIHLLSINADHPPIRLAASTIKKI 217 >gi|242280573|ref|YP_002992702.1| phage repressor [Desulfovibrio salexigens DSM 2638] gi|242123467|gb|ACS81163.1| putative phage repressor [Desulfovibrio salexigens DSM 2638] Length = 218 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 13/216 (6%) Query: 11 EAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +R+ E +++ + LAR+ G+ + + K+ G RW S+ L +T Sbjct: 8 SFFERLKEHTDISTQAQLARELGVGRAAVSLVKKKGAVP-PRWILELSVRYNLDSTWLES 66 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 P + + IP + S GG F++G G + G Sbjct: 67 GLGSPRPEVNAVEFADEFSRIPKVAARLSAGGGSFETG----GEIEGFYAFRKDWIGGKG 122 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SM P ++GDI++L+ + + + ++ K + R Sbjct: 123 ---NPSDMVLMEVYGNSMEPELKEGDIVLLDQSRKDILAGGIYAVGVEDTVMVKRVEKRP 179 Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARILWAS 222 G+ + L S N Y + + + + +++W S Sbjct: 180 GQ-VVLHSDNKDYAPIYLGGDELENVRVLGQVVWVS 214 >gi|269956058|ref|YP_003325847.1| SOS-response transcriptional repressor, LexA [Xylanimonas cellulosilytica DSM 15894] gi|269304739|gb|ACZ30289.1| SOS-response transcriptional repressor, LexA [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 21/220 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 +++ E I E P+ + GL S K + +E + R P+ + Sbjct: 33 QRRVLETIRASVETRGYPPTMREIGEAVGLASPSSVKHQLMTLERKGYLRRDPNRPRAME 92 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ E P G E+ + +GG + + + Sbjct: 93 VVDPAGEAPTGDPAQPSLSGLDEEQLSAPSYVPVVGRIAAGGPILAEQL----VEDVFPL 148 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + K Q SM+ GD +++ G+ + G+ Sbjct: 149 PRQLVG-------DGELFLLKVQGDSMVDAAICDGDWVVVRRQPVAENGEIVAAMID-GE 200 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + + R++ Sbjct: 201 ATVKTF-KHDHGHLWLLPQNPNYAPI--PGDEAQILGRVV 237 >gi|257455556|ref|ZP_05620786.1| phage repressor [Enhydrobacter aerosaccus SK60] gi|257447022|gb|EEV22035.1| phage repressor [Enhydrobacter aerosaccus SK60] Length = 222 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 14/220 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + + LT LA+K+G + + + R S+ + ++ A Sbjct: 3 ETIGSRVKKARKYAGLTQVELAKKSGSKQGAISDLESG------RNESSTKLVEMAEAMG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L + K + + P G+ + Sbjct: 57 VSAKWLATGEGNMLDQDIKVPSISNVDFIPQKIRKAPVL-NWVQAGHPADVFDNGYDEYE 115 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVL 185 + Q + SM P + +GD +++++ Q GD ++ K Sbjct: 116 YFYDEGYGLQVYWLYVRGDSMNPEFFEGDKILVDAERQARAGDYVIAMVDHEAQATFKRY 175 Query: 186 IS------RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L+ LN YP I+ + ++ Sbjct: 176 KPCGYDPNLGREYCQLVPLNDFYPTIDSRAVRIDIVGVVV 215 >gi|229104259|ref|ZP_04234930.1| Phage transcriptional repressor [Bacillus cereus Rock3-28] gi|228679155|gb|EEL33361.1| Phage transcriptional repressor [Bacillus cereus Rock3-28] Length = 223 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 12/226 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M F K + + + + + A K GL PT+ +S G+ S +++ K Sbjct: 1 MVKFMEK--AKIVTHLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T L L T +++ + S G G Sbjct: 55 VCKGLGITTDDLEVLTTKGDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEEN 114 Query: 121 PEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E P + + + + TSM + G +++ V G ++K D Sbjct: 115 IEGYLPMLSTFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYD 174 Query: 180 IVAKVLISRRGRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 K + G I L+ L N + T + D++ I R++ A Sbjct: 175 ATVKKISK-SGSIITLIPLSNDPIHEPQTYDLSAEDVKIIGRVVQA 219 >gi|219681216|ref|YP_002455861.1| C2 [Salmonella enterica bacteriophage SE1] gi|318065925|ref|YP_004123783.1| C2 [Salmonella phage ST160] gi|66473831|gb|AAY46477.1| C2 [Salmonella phage SE1] gi|289066911|gb|ADC81122.1| C2 [Salmonella phage ST160] Length = 229 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 62/229 (27%), Gaps = 24/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + +++ E ++ LA+ +G+ + + G + I +I Sbjct: 1 MKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + L + P + G EI Sbjct: 55 ALGVSSEWLSTGIGPMKKDGTTPINASP----SSNTFKIDILDLEVSAGPGVINREFVEI 110 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + SM GD+L ++ +I+ GD + Sbjct: 111 LRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGIYAF 170 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCY---PVDTVE-MSDIEWIARIL 219 K L + + ++S N Y + M+ + +++ Sbjct: 171 LYDDTAHVKRLQKMKD-KLLVISDNKSYSAWDPIERDEMNRVFVFGKVI 218 >gi|188586129|ref|YP_001917674.1| SOS-response transcriptional repressor, LexA [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350816|gb|ACB85086.1| SOS-response transcriptional repressor, LexA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 222 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 71/226 (31%), Gaps = 22/226 (9%) Query: 1 MTSFSHK--KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSK--RFGIEGRNRWPS 54 M+ S+K +I+ I+ A ++ PS + + GL TS +G R S Sbjct: 1 MSKKSNKPMQIYNFINDYASKNGYPPSVREICQGVGLSSTSTVHLHLSSLEKQGYIRRDS 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T + + N + ++ + + + +G + N Sbjct: 61 TRPRAIEILSKNNNKNTDQEKSNNNEKIDNEDLNTTKIPIVGQVTAG----EPILAEENI 116 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P+ S + + + SM D++I+N N G+ ++ Sbjct: 117 LEYFPIPKQLSYG-------KELFMLQIKGDSMIEAGIYDSDLVIVNKQNTANNGEIIVA 169 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N Y D+ I +++ Sbjct: 170 L-LEDEATVKRFYK-ENEYIRLQPENKAYSPIY--SRDVSIIGKVV 211 >gi|210632226|ref|ZP_03297243.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] gi|210159684|gb|EEA90655.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] Length = 222 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 65/219 (29%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H I + I R+ ++ +T LA K + ++ + + P + K+ Sbjct: 10 HMGISQNIKRLRKQAGMTQVELAEKLDVARSTITQWETGWS-----SPRMGMVQKLAGVF 64 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 T +L + S + G G + V Sbjct: 65 GVTSADMLAEDSEGLPSGAMPVA-------ASSATVPLLAIGRVHAGALTDEEEVSHRVE 117 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + + + + M + +G ++++ + G +++ + V + Sbjct: 118 VPSSVLSGHPRAFALEVEGDCMDRVIPEGSHVLVDPDREPGNGSIAVVETDSYQAVMRRW 177 Query: 186 ISRRGRSIDLMSL-NCCYPVDTVEMSD--IEWIARILWA 221 ++ L + + D + + ++W Sbjct: 178 YR-GSSTLMLTADSHSEQEDMVFGPEDGPVRVVGTVVWW 215 >gi|289642424|ref|ZP_06474570.1| SOS-response transcriptional repressor, LexA [Frankia symbiont of Datisca glomerata] gi|289507769|gb|EFD28722.1| SOS-response transcriptional repressor, LexA [Frankia symbiont of Datisca glomerata] Length = 249 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 17/220 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 +K+ E I ER PS + GL TS ++ K +G R P + Sbjct: 35 QRKVLEVIRDAVERRGYPPSVREIGDAVGLTSTSSVAHQLKTLEEKGFLRRDPHRPRAME 94 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L+A P T + P + + Sbjct: 95 VLSAQAPVRPVARQAPGVGTLTAGSSTDGPAQAAYVPVLGRIAAGGPILAEQAVEEVFPL 154 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + SM GD +++ + G+ + G+ Sbjct: 155 PREIVG-------EGTLFTLRVVGDSMVNAAICDGDWVVVRQQPVADNGEIVAAMID-GE 206 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L R + L N Y + RI+ Sbjct: 207 ATVKTLRRR-DGHVWLEPQNPAYADI--PGDSATILGRIV 243 >gi|303327568|ref|ZP_07358009.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3] gi|302862508|gb|EFL85441.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3] Length = 230 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 25/226 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ A+D + + LAR G+ P S + +++ G W T A T Sbjct: 13 RLMRALDAA------SEAELARALGITPQSVSGARKRGEVP-PAWIQT-----CAAQTGV 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEI--- 123 L + + + + G V Sbjct: 61 NAHWLFFGSGPMRLPEAAEGELPSMQEDCDTELITVPLAEARLSAGTGSLEVSSNSNEGG 120 Query: 124 ---RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 RS + + SM+P D+++L+ RL I Sbjct: 121 YAFRSDFLRRKGNPRRMVLMRVSGDSMVPEIFDNDLVLLDRGQTEISPGRLYAVGFEDAI 180 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221 K + I L S+N YP +++ I R+LW+ Sbjct: 181 YIKRIDKLP-GKIILHSVNPAYPPLSLDLRGDCADQFRVIGRVLWS 225 >gi|194099007|ref|YP_002002080.1| putative phage repressor [Neisseria gonorrhoeae NCCP11945] gi|193934297|gb|ACF30121.1| putative phage repressor [Neisseria gonorrhoeae NCCP11945] Length = 228 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 69/215 (32%), Gaps = 13/215 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGI--EGRNRWPSTESIFKILAATN 66 + + + E + + LA++AG P+ + G+ + K+ +A N Sbjct: 9 LQNMKNLVEEAG-SVAELAKRAGYAQPSYLYQIINQTAIQNGKPKNIGGAMARKLESAMN 67 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG---FFDSGVFPTGNKWNTVGVPEI 123 + L + + I + + +G+ G D P + V P Sbjct: 68 KAEGWLDMNHGETLPLPPEDTETIRIDHLDMAGACGGGIEADDWPSPISS----VEFPLD 123 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + T+ SM P + +++++ GD + G + K Sbjct: 124 AVRRLFSGRDTSGLKIVGTRGDSMEPTIPETSAVLIDTKADTFAGDGIYFFAYAGGLYTK 183 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIAR 217 L + L S N Y ++ +D I R Sbjct: 184 RLQKTPAGLLAL-SDNPLYQSFPIDENDRFRIIGR 217 >gi|315453658|ref|YP_004073928.1| hypothetical protein HFELIS_12540 [Helicobacter felis ATCC 49179] gi|315132710|emb|CBY83338.1| putative uncharacterized protein [Helicobacter felis ATCC 49179] Length = 206 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 69/212 (32%), Gaps = 16/212 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ +NLT LA K G+ S + + + +++ K+ A N Sbjct: 2 LKEKLKQLRNANNLTQEELALKCGVSLQSIKRYESEQKS----NITLDTLEKLANALNTD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + + F + + + Sbjct: 58 LHFFTSTHRKVEDVVMVPYIKDVKAHIRRDKIDDDNSNMTF--------LPQSKSFLKRH 109 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + SM PL ++GD+L+ + G + + G+ K + R Sbjct: 110 FGIVSTEHLGLLQAMGNSMEPLIKEGDLLLFQNDGSCYEG-AVYVIDLGGEYYVKRISKR 168 Query: 189 RGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + L+S N Y ++ + +I + R++ Sbjct: 169 P--EVSLISDNPAYKPIILQSLEEIIILGRVV 198 >gi|229047381|ref|ZP_04192978.1| Phage transcriptional repressor [Bacillus cereus AH676] gi|228723966|gb|EEL75314.1| Phage transcriptional repressor [Bacillus cereus AH676] Length = 239 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + + A K GL PT+ +S G+ S +++ K+ T Sbjct: 25 EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 80 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L L + T +++ + S G G E P Sbjct: 81 DLERLATQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 140 Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + TSM + G +++ V G ++K D K + Sbjct: 141 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 199 Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221 G I L+ L N + T + D++ I R++ A Sbjct: 200 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 235 >gi|15827479|ref|NP_301742.1| LexA repressor [Mycobacterium leprae TN] gi|221229956|ref|YP_002503372.1| LexA repressor [Mycobacterium leprae Br4923] gi|254809104|sp|B8ZQU5|LEXA_MYCLB RecName: Full=LexA repressor gi|327478573|sp|Q49848|LEXA_MYCLE RecName: Full=LexA repressor gi|467099|gb|AAA17282.1| lexA [Mycobacterium leprae] gi|13093029|emb|CAC31384.1| LexA, SOS repressor protein [Mycobacterium leprae] gi|219933063|emb|CAR71098.1| LexA, SOS repressor protein [Mycobacterium leprae Br4923] Length = 235 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 23/220 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 + I I PS +A GL TS ++ + +G R P+ Sbjct: 27 QRTILNVIRASVTSRGYPPSIREIADAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 86 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + L G + +P+L +GS F G + + Sbjct: 87 VRGVEETQAAGPAVLTEVAGSDVLPEPTFVPILGRIAAGSPI------FAEGTVEDIFPL 140 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + K SM GD +++ + GD + G+ Sbjct: 141 PRELVG-------EGTLFLLKVTGDSMVEAAICDGDWVVVRQQKVADNGDIVAAMID-GE 192 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + L+ N + +D + +++ Sbjct: 193 ATVKTFKR-AGGQVWLIPHNPAFDPI--PGNDATVLGKVV 229 >gi|300949501|ref|ZP_07163497.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] gi|300451077|gb|EFK14697.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] Length = 231 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I ++ N+ + LA G+D + ++ + G+ + S +++ ++ A + Sbjct: 2 KIGSRIRQLRLAKNIKIAELAEAVGVDAANISRLE----TGKQKQFSEQTLNRLAQALSV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117 ++ L +D EK + G Sbjct: 58 SVPDLFTSDENDTTVHINSEKHASPVKDVDVY-RVEVLDVSASAGAGHIHGSDVIDVIHA 116 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + ++ + + SM GD++ ++ I GD + + Sbjct: 117 IEFSNDQALAMFGGRTPSGVKVINVRGDSMASTIEPGDLIFVDVTINEFDGDGIYVFGFD 176 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 G + K L + + ++S N Y + ++L SQ Sbjct: 177 GKVYVKRLQMIPDQ-LLVISDNPRYREWNITKENEHRFYIYGKVL-ISQ 223 >gi|261245569|emb|CBG23364.1| repressor protein cI [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 241 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 24/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + +++ E ++ LA+ +G+ + + G + I +I Sbjct: 13 MKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 66 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L + P + G EI Sbjct: 67 ALGVNSEWLSTGIGPMKKDGTTPINASP----SSNTFKIDILDLEVSAGPGVINREFVEI 122 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + SM GD+L ++ +I+ GD + Sbjct: 123 LRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGIYAF 182 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCY---PVDTVE-MSDIEWIARIL 219 K L + + ++S N Y + M+ + +++ Sbjct: 183 LYDDTAHVKRLQKMKD-KLLVISDNKSYSAWDPIERDEMNRVFVFGKVI 230 >gi|193070526|ref|ZP_03051466.1| repressor protein CI [Escherichia coli E110019] gi|192956220|gb|EDV86683.1| repressor protein CI [Escherichia coli E110019] Length = 215 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 28/226 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H+ I E I + E L+ + LA+ G S + E R S + Sbjct: 1 MKTM-HEIIGERIKSLREAKGLSQAQLAKLCGWAAPS----RLGNYELGTRKVSADDALV 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + AA + +++ ++ ++ F +G F + G + + V Sbjct: 56 LGAALGVSPAKIMFGED-----SDAVFRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPT 110 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174 S + + + SM P + +G +++++ A V GD + Sbjct: 111 TTKASE---------KAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVAS 161 Query: 175 PRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K G S L+ LN Y + S I +++ Sbjct: 162 ANGDSEATFKKYEKDAGVSY-LVPLNPAYRTLDCDHS-CRIIGKVV 205 >gi|300919981|ref|ZP_07136440.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] gi|300412928|gb|EFJ96238.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] Length = 235 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 73/228 (32%), Gaps = 17/228 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E ++ ++ S LA G+ + K G + + K+ + Sbjct: 6 ERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTNGSRKMVELANALKVRPEWLSSGI 65 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRS 125 + + + ++ +++ + F + G+ + S Sbjct: 66 GEMRDGAHEEPSNVRESSLKAVVWEDIKRNDDEFVALPLLNVSLSAGSGSCELEESSEFS 125 Query: 126 PHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + + SM P GD++ +N+ + ++ Sbjct: 126 LVFRKHYLKKMGVSERSAKLVRVVGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSDL 185 Query: 180 IVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222 + K LI S+ + S+N YP + ++ + + I R+ W+S Sbjct: 186 LRVKTLI-ATPTSVIIRSINREEYPDEVMDRDEFHETVRIIGRVFWSS 232 >gi|302522304|ref|ZP_07274646.1| LexA repressor [Streptomyces sp. SPB78] gi|302431199|gb|EFL03015.1| LexA repressor [Streptomyces sp. SPB78] Length = 262 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 52/219 (23%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 61 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 110 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 P + P + + + +P Sbjct: 111 --RDPHRPRAYEVRGSDQPSPQPADTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 168 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 169 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 220 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 221 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 256 >gi|194014993|ref|ZP_03053610.1| LexA repressor [Bacillus pumilus ATCC 7061] gi|194014019|gb|EDW23584.1| LexA repressor [Bacillus pumilus ATCC 7061] Length = 206 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 60/227 (26%), Gaps = 36/227 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++ I I + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQLDILTFIKEEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + ++L I + P + N Sbjct: 61 TKPRAIEVLDEEEMNIP-------------------KSAVMNVPVIGKVTAGLPITAVEN 101 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +PE + A Q + SM+ D +I+ N GD ++ Sbjct: 102 VEEYFPLPETFA------APDEQVFMLEIMGESMIDAGILDKDYVIVRQQSTANNGDIVV 155 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N ++ + + +++ Sbjct: 156 AMTEEDEATVKRFYK-EDTHFRLQPENPSMEPIILQN--VSILGKVI 199 >gi|183602410|ref|ZP_02963776.1| LexA repressor [Bifidobacterium animalis subsp. lactis HN019] gi|219683275|ref|YP_002469658.1| LexA repressor [Bifidobacterium animalis subsp. lactis AD011] gi|241191236|ref|YP_002968630.1| LexA repressor [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196642|ref|YP_002970197.1| LexA repressor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218329|gb|EDT88974.1| LexA repressor [Bifidobacterium animalis subsp. lactis HN019] gi|219620925|gb|ACL29082.1| LexA repressor [Bifidobacterium animalis subsp. lactis AD011] gi|240249628|gb|ACS46568.1| LexA repressor [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251196|gb|ACS48135.1| LexA repressor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177352|gb|ADC84598.1| LexA repressor [Bifidobacterium animalis subsp. lactis BB-12] gi|295794229|gb|ADG33764.1| LexA repressor [Bifidobacterium animalis subsp. lactis V9] Length = 231 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 23/218 (10%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFKIL 62 ++ +AI ++ E PS + + A L TS + + +E + R P+ +++ Sbjct: 25 QVLDAIRKLLEEQGFAPSLREIGKAANLKSTSSVQHQLHALESKGFIRRDPNKGRAIELV 84 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + T +PF ++PL+ +G + + + +P Sbjct: 85 ETQDGTSGGNPIVPFDGMDLEPSDFLDVPLVGAIAAGQPIT------AEQHVEDVMRLPV 138 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + SM+ GD +++ GD + + Sbjct: 139 RLTGT-------GNLFMLEVKGDSMIDAAICDGDFVVVREQHNAENGDIVAALLD-DEAT 190 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + + + +++ Sbjct: 191 VKTF-RQEHGHTWLIPHNPNYAPI--DGTHAQIMGKVV 225 >gi|75676032|ref|YP_318453.1| LexA repressor [Nitrobacter winogradskyi Nb-255] gi|123745685|sp|Q3SRJ0|LEXA_NITWN RecName: Full=LexA repressor gi|74420902|gb|ABA05101.1| SOS-response transcriptional repressor, LexA [Nitrobacter winogradskyi Nb-255] Length = 233 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 60/228 (26%), Gaps = 10/228 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + ++ I+ + + PS + L + ++ +R I Sbjct: 1 MLTRKQYELLRFINERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ + P K + G G Sbjct: 61 ARAIEVIKLPELAASGGGRRGFTPSVIEGNLGKVRRGGGGGADEAERPVAVPVMGRIAAG 120 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171 + + + + SM+ GD+ ++ + GD + Sbjct: 121 TPIEALQTCSHTISLPPDMLGAGEHYALEVRGDSMVDAGILDGDMALIQRNPTADTGDIV 180 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K R SI L N Y V + + ++ R++ Sbjct: 181 VALIDDEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVQIQGRLV 227 >gi|85703338|ref|ZP_01034442.1| LexA repressor [Roseovarius sp. 217] gi|85672266|gb|EAQ27123.1| LexA repressor [Roseovarius sp. 217] Length = 233 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 12/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIQKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I ++ + P + + + G G Sbjct: 61 ARALEIVRLPESLGGEAR-HSFTPRVIDGDRPNGPRPANSQPVEVAHAFEVPLMGRIAAG 119 Query: 113 NKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + + S + + + + SM GD++I+ + GD Sbjct: 120 VPIEAIAHVQHNVSVPSTMIRGAANHYALEVRGDSMIEAGINDGDVVIIRETSVADNGDI 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R G +I L + N Y ++ R++ Sbjct: 180 VVALIEDQEATLKRFYRR-GNAIALEAANPAYETRLFPEDQVQVQGRLV 227 >gi|251792258|ref|YP_003006980.1| HTH-type transcriptional regulator PrtR [Aggregatibacter aphrophilus NJ8700] gi|157921532|gb|ABW02839.1| putative repressor CI [Aggregatibacter aphrophilus NJ8700] gi|247533647|gb|ACS96893.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein) [Aggregatibacter aphrophilus NJ8700] Length = 231 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 11/227 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-- 64 + E + +R LA AG + + + KI Sbjct: 2 NTLAERLQFAMDRMGKNQVELAALAGTSQVTISNILNGVTKSPRNGLQIAKALKISPEWL 61 Query: 65 -TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WN 116 + + T + F GN +N Sbjct: 62 LNGTGEMVQPKIESNVAETGSFDLWDRNTPLNDDEVEVPLFQEIRLAAGNGFADDIMDYN 121 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + R+ SM P+ G + +++ + + Sbjct: 122 NFKLRFSRATLRRQGVQYENAVCVVADGNSMEPVIPNGATVGIDTGNKTIRDGSIYAINH 181 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 G + K+L + I + S N Y + + D+ I ++ W S Sbjct: 182 GGLLRIKLLYNMPNNQIKIRSYNTDEYDDEIASLDDVSVIGKVFWYS 228 >gi|296444565|ref|ZP_06886529.1| transcriptional repressor, LexA family [Methylosinus trichosporium OB3b] gi|296257833|gb|EFH04896.1| transcriptional repressor, LexA family [Methylosinus trichosporium OB3b] Length = 235 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 12/230 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + + I + + PS K LD S + R + R P+ Sbjct: 1 MLTKKQSDLLRFIHERLKETGVPPSFDEMKDALDLRSKSGIHRLILALEERGFIRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-----GSGGFFDSGVFP 110 ++L + + + + G Sbjct: 61 ARALEVLRLPESATPRAAARGGKFSPSVIEGALGRVRPMAERAESEVDQQVAVPVMGRIA 120 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 G + + + + + SM+ GDI+++ + GD Sbjct: 121 AGTPISALQNRSHTISLPPDLLGGGEHFALEVRGDSMIDAGILDGDIVVVKKQDSADTGD 180 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K L R SI L + N Y + R++ Sbjct: 181 IVVALIDDEEATLKRLRKRGA-SIALEAANPAYETRIFGPDRVRIQGRLV 229 >gi|316985836|gb|EFV64778.1| peptidase S24-like family protein [Neisseria meningitidis H44/76] gi|325128010|gb|EGC50908.1| peptidase, S24 family [Neisseria meningitidis N1568] gi|325130061|gb|EGC52850.1| peptidase, S24 family [Neisseria meningitidis OX99.30304] gi|325133952|gb|EGC56607.1| peptidase, S24 family [Neisseria meningitidis M13399] gi|325136816|gb|EGC59414.1| peptidase, S24 family [Neisseria meningitidis M0579] gi|325138493|gb|EGC61059.1| peptidase, S24 family [Neisseria meningitidis ES14902] gi|325139936|gb|EGC62465.1| peptidase, S24 family [Neisseria meningitidis CU385] gi|325142187|gb|EGC64610.1| peptidase, S24 family [Neisseria meningitidis 961-5945] gi|325198111|gb|ADY93567.1| peptidase, S24 family [Neisseria meningitidis G2136] gi|325200404|gb|ADY95859.1| peptidase, S24 family [Neisseria meningitidis H44/76] gi|325206257|gb|ADZ01710.1| peptidase, S24 family [Neisseria meningitidis M04-240196] gi|325207946|gb|ADZ03398.1| peptidase, S24 family [Neisseria meningitidis NZ-05/33] Length = 236 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 22/231 (9%) Query: 11 EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGR------------NRWPSTES 57 + + +A+ L P+ +A + + + + GI + W T Sbjct: 6 DRLFEIAKEQGVLKPADIAERLNISQQALKNWESRGIAAKALPEVAKAFGVSETWLRTGE 65 Query: 58 IFK-----ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + I + + + + + Y S G + P Sbjct: 66 GSRTAPVLIDPDLPHEVKDIHRPMTWSSNDPLPDDDYVFVPYLKESCFKGGVGTYEIPDY 125 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 N + +P +S SM + + +++ ++ Sbjct: 126 NGY---RLPFGKSTLKRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 182 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 + G K LI + G S+ + S N Y + + + I R+ W S Sbjct: 183 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYGDENAPLDSLTVIGRVFWWS 233 >gi|162147707|ref|YP_001602168.1| LexA repressor [Gluconacetobacter diazotrophicus PAl 5] gi|209542331|ref|YP_002274560.1| LexA repressor [Gluconacetobacter diazotrophicus PAl 5] gi|189046538|sp|A9HJ64|LEXA_GLUDA RecName: Full=LexA repressor gi|161786284|emb|CAP55866.1| putative lexA repressor [Gluconacetobacter diazotrophicus PAl 5] gi|209530008|gb|ACI49945.1| SOS-response transcriptional repressor, LexA [Gluconacetobacter diazotrophicus PAl 5] Length = 253 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 63/248 (25%), Gaps = 30/248 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-------- 52 M + ++ IDR ++ +PS K L+ S + R R Sbjct: 1 MLTRKQHELLLFIDRHLKQTGFSPSFDEMKDALNLRSKSGIHRLISALEERDFLRRRHHR 60 Query: 53 --------------------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 P ES + A + + + + Sbjct: 61 ARALEVLRLPETMPAATGKPPLAESGPPPVTAPATDESAAAESFVPNVIKGDFANRLAGA 120 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLY 151 +G+ G G + + + + SM Sbjct: 121 SVATEAGAIHLPFYGRIAAGQPIEALRETGAQIEVPMNLLGHGEHYALEVAGDSMIEAGI 180 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD +I+ G ++ ++ K L R G +I L N Y V Sbjct: 181 LDGDTVIIRRGDVAQNGQIVVALIDDQEVTLKRLRRR-GSTIALEPANARYEPRIVPSDR 239 Query: 212 IEWIARIL 219 + +++ Sbjct: 240 VRIQGQLV 247 >gi|239826731|ref|YP_002949355.1| LexA repressor [Geobacillus sp. WCH70] gi|259494476|sp|C5D9K3|LEXA_GEOSW RecName: Full=LexA repressor gi|239807024|gb|ACS24089.1| SOS-response transcriptional repressor, LexA [Geobacillus sp. WCH70] Length = 207 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++I + I + + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQQQILDFIKKEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL + + P + N Sbjct: 61 TKPRAIEILD------------------ADFSASNQTDDVISVPIIGKVTAGQPITAIEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + +P + + + + SM GD +I+ + GD ++ Sbjct: 103 IEDYFPLP------KRLVSSEDHVFMLEVMGDSMIEAGILDGDYVIVRQQQSADNGDIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N V D + +++ Sbjct: 157 AMTEDNEATVKRFFKEKD-HIRLQPENSNLEPIIVR--DCTILGKVI 200 >gi|209967957|ref|YP_002265383.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238] gi|208011481|emb|CAQ81944.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238] Length = 205 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 22/217 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + L+ LA K + ++ ++ + + +N+ + T Sbjct: 4 IGERIKSLRLNQGLSQESLAEKINVTKSTISQWEVGKAQPKNKNL-------LSIVTFFD 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + +P + G + T + V I Sbjct: 57 TTYEYLKGGGEIDDRCPRVVSVPFYNVSVAAGLGIINDSETYTYVDIENLQVSNI----- 111 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 SM P+ + G IL++++ + + + + + K LIS Sbjct: 112 ------EHLVSLTASGDSMEPVLKDGSILVVDTQSKNIIDGHMYVFRQDDLLRVK-LISY 164 Query: 189 RGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWAS 222 + + S N Y + E+ D+ I +++W S Sbjct: 165 EKNHLIVTSYNKEYKDEMYKFSELDDLNIIGQVIWHS 201 >gi|125973291|ref|YP_001037201.1| SOS-response transcriptional repressor, LexA [Clostridium thermocellum ATCC 27405] gi|256003771|ref|ZP_05428759.1| SOS-response transcriptional repressor, LexA [Clostridium thermocellum DSM 2360] gi|281417495|ref|ZP_06248515.1| transcriptional repressor, LexA family [Clostridium thermocellum JW20] gi|166990798|sp|A3DDH9|LEXA_CLOTH RecName: Full=LexA repressor gi|125713516|gb|ABN52008.1| SOS-response transcriptional repressor, LexA [Clostridium thermocellum ATCC 27405] gi|255992332|gb|EEU02426.1| SOS-response transcriptional repressor, LexA [Clostridium thermocellum DSM 2360] gi|281408897|gb|EFB39155.1| transcriptional repressor, LexA family [Clostridium thermocellum JW20] gi|316940477|gb|ADU74511.1| transcriptional repressor, LexA family [Clostridium thermocellum DSM 1313] Length = 213 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 27/221 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59 +KI + ++ E++ PS + G TS + ++ +G + PS Sbjct: 8 KQQKILDFLNEQIEKNGYPPSVREICNAVGFKSTSTVHSYLEKLRKQGLIQKDPSKPRAL 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K++ + K L P + N +T Sbjct: 68 KVINNKKNSKTD-----------EPKNIYSGKELVEVPIIGKVTAGQPILAVENIEDTFP 116 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + + Q SM D +++ N GD ++ Sbjct: 117 LPLD-------FVQNSTVFMLRVQGDSMIEAGIFDNDYIVVKQQSTANNGDIVVALID-D 168 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N Y V ++ + +++ Sbjct: 169 EATVKTFYKEK-GFIRLQPANKFYDPIIV-RDNLSILGKVI 207 >gi|260856429|ref|YP_003230320.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|257755078|dbj|BAI26580.1| predicted phage repressor protein CI [Escherichia coli O26:H11 str. 11368] Length = 235 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 72/228 (31%), Gaps = 17/228 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E ++ ++ S LA G+ + K G + + K+ + Sbjct: 6 ERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTNGSRKMVELANALKVRPEWLSSGI 65 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRS 125 + + + + +++ + F + G+ + S Sbjct: 66 GEMRDGAHEEPSNVRDSSLKAVVWEDIKRNDDEFVALPLLNVSLSAGSGSCELEESSEFS 125 Query: 126 PHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + + SM P GD++ +N+ + ++ Sbjct: 126 LVFRKHYLKKMGVSERSAKLVRVVGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSDL 185 Query: 180 IVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222 + K LI S+ + S+N YP + ++ + + I R+ W+S Sbjct: 186 LRVKTLI-ATPTSVIIRSINREEYPDEVMDRDEFHETVRIIGRVFWSS 232 >gi|227878761|ref|ZP_03996672.1| SOS-response transcriptional repressor [Lactobacillus crispatus JV-V01] gi|256849961|ref|ZP_05555392.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262046793|ref|ZP_06019753.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|227861654|gb|EEJ69262.1| SOS-response transcriptional repressor [Lactobacillus crispatus JV-V01] gi|256713450|gb|EEU28440.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260572775|gb|EEX29335.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] Length = 208 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 16/216 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I +++LT + LA K + + +R R E + K+ + Sbjct: 4 ISENIKFYRSKNSLTQAQLADKLNVSEQAVYNWERGTRI--PRMGYIEKMAKLFNIESPD 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I ++ P + ++ + + G G E + Sbjct: 62 ILKVNKQPTNMKPLSQSGMHAVRIPII-----------GTIACGTPILAEQNIEGYTTEL 110 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187 + Q SM P G +I+ V + ++ + K + Sbjct: 111 FNEKPDGTLFVLRCQGDSMEPKIPDGATVIVREQPTVEDDEIAAVLVDDNTEATLKRI-K 169 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILWAS 222 G+ + LM N Y + + + +++ S Sbjct: 170 HVGKQVMLMPENKKYDPILLNEENPGRILGKVIKVS 205 >gi|295402356|ref|ZP_06812311.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975629|gb|EFG51252.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 206 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 26/215 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + I++ + ++ L + GL + + + E R +I L Sbjct: 6 KIIGKNIEKYRKLKGISAEELGNRVGLTKKTIRRYE--TGEIRIINDRVLAIADALDIDP 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + D+ + G GN E Sbjct: 64 ADLYEGTDIVEFTDEVDKLPIV------------------GTISCGNGVIAYEDIEGYEE 105 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + + SM+ GD+L++ V GD + G+ V K + Sbjct: 106 VPRSWLNGGEYFFLRAKGDSMINARIMDGDLLLIRRQDDVENGDIAAVLID-GEAVLKRV 164 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIAR 217 +I L S N Y + D I I + Sbjct: 165 YK-TDDTIILQSENPAYKPIILRKDDMKNIRIIGK 198 >gi|109289970|ref|YP_655502.1| CI repressor [Mannheimia phage phiMHaA1] gi|254360842|ref|ZP_04976989.1| bacteriophage repressor [Mannheimia haemolytica PHL213] gi|90110576|gb|ABD90586.1| CI repressor [Mannheimia phage phiMhaA1-PHL101] gi|90110627|gb|ABD90636.1| CI repressor [Mannheimia phage phiMhaA1-BAA410] gi|153092316|gb|EDN73385.1| bacteriophage repressor [Mannheimia haemolytica PHL213] Length = 228 Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 7/218 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + ++ LT A + G+ S K R ++ + Sbjct: 2 DTLASRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTRNPTRIYEIANVLDVDVNWL 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEI 123 +T G+ E+E +L +G F TG+ V Sbjct: 62 KTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNGSFVTGDLTAYTHAVEFENA 121 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 A + SM P GD+L +++ GD + + ++ K Sbjct: 122 YFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTTKSAYQGDGVYVFSYGENLYVK 181 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218 L G + ++S N Y + + ++ Sbjct: 182 RLQF-AGDELLVISDNPLYKEWRITSENEHKFQIHGKV 218 >gi|70728592|ref|YP_258341.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68342891|gb|AAY90497.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens Pf-5] Length = 248 Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 74/249 (29%), Gaps = 34/249 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + +R ++P+ L R+ G+ ++ ++ G+ PS + I + Sbjct: 1 MRSMQIRNVSTVLRELLDRDGISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISR 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL------------YFPPSGSGGFFDSGV 108 I + QL EI S F Sbjct: 57 IAEYFQVSTDQLRGRVDIAPARAAAPRGEIHSELKDISLWDDDTPVDDDEVSVPFLREVE 116 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSA 162 G+ + E S G +++ + SMLP+ R G + +N+ Sbjct: 117 LAAGSGRFVIEESERASLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAG 176 Query: 163 IQVNCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDI 212 GD + G + K L I L S N ++ I Sbjct: 177 KCAI-GDIVDGDLYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYSFQEIQEEQI 234 Query: 213 EWIARILWA 221 + + W Sbjct: 235 SILGHVFWW 243 >gi|46358671|ref|YP_006379.1| CI [Enterobacteria phage ST104] gi|56414532|ref|YP_151607.1| transcriptional activator-regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363463|ref|YP_002143100.1| transcriptional activator-regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|46357907|dbj|BAD15186.1| CI [Enterobacteria phage ST104] gi|56128789|gb|AAV78295.1| transcriptional activator-regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094940|emb|CAR60477.1| transcriptional activator-regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|312911317|dbj|BAJ35291.1| transcriptional activator-regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 229 Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 24/229 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + +++ E ++ LA+ +G+ + + G + I +I Sbjct: 1 MKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A L + P + G EI Sbjct: 55 ALGVNSEWLSTGIGPMKKDGTTPINASP----SSNTFKIDILDLEVSAGPGVINREFVEI 110 Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + SM GD+L ++ +I+ GD + Sbjct: 111 LRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGIYAF 170 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCY---PVDTVE-MSDIEWIARIL 219 K L + + ++S N Y + M+ + +++ Sbjct: 171 LYDDTAHVKRLQKMKD-KLLVISDNKSYSAWDPIERDEMNRVFVFGKVI 218 >gi|289649967|ref|ZP_06481310.1| XRE family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|320321116|gb|EFW77260.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|330988517|gb|EGH86620.1| XRE family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 221 Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 16/219 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + L+ LA KAG+ ++ + G + SI K Sbjct: 3 NLADRLKIARAHAGLSQGELALKAGIKQPVISQLETGKNAGSS---FVVSIAKACGV--- 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV--PEIRS 125 + L P + + G + + Sbjct: 57 -NAEWLVNGQGGMLPETSGFDANVEPALAPVKFYEYPEISWVQAGAATEALVIGNVANCD 115 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180 H K + SM + +G ++++ + G ++ T + Sbjct: 116 VHPSDAWAGPNGFWLKVKGPSMTAPGGISFVEGMLILIAPGFDIQSGQYVVAKITDTNEA 175 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K GRS L LN + ++ D + I R++ Sbjct: 176 TFKQFYKDSGRSY-LRPLNPVFSTIEID-EDWQIIGRVV 212 >gi|316933939|ref|YP_004108921.1| LexA family transcriptional repressor [Rhodopseudomonas palustris DX-1] gi|315601653|gb|ADU44188.1| transcriptional repressor, LexA family [Rhodopseudomonas palustris DX-1] Length = 236 Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 62/231 (26%), Gaps = 13/231 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + ++ + I+ + + PS + L + ++ +R I Sbjct: 1 MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG---FFDSGVF 109 + K+ + S K + + G G G Sbjct: 61 ARAIEVIKLPDTSGMPGNARRGFTPSVIEGNLGKVRPPSPVPSEDDGDRGSVAVPVMGRI 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168 G + + + + SM GD+ ++ N G Sbjct: 121 AAGTPIEALQTRSHTVSVPADMLGSGEHYALEVRGDSMVEAGILDGDMALIQKNDVANTG 180 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K R SI L N Y V + + + +++ Sbjct: 181 DIVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 230 >gi|319897230|ref|YP_004135425.1| hypothetical protein HIBPF09641 [Haemophilus influenzae F3031] gi|317432734|emb|CBY81099.1| Conserved hypothetical protein [Haemophilus influenzae F3031] Length = 230 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 56/213 (26%), Gaps = 19/213 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + LT L + G+ + K + G + + Sbjct: 4 LANRLKIARKAAGLTQDQLGKLVGVSQNAIQKIEAGGETKYT--------LALASVLGVD 55 Query: 69 ICQLLDLPFSDGRTTEKKEKE-IPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRSP 126 L T E + + G + PEI S Sbjct: 56 PIWLQSGEGKTPEKTTALSTELVTTQRDNEHRHRIDYLDVYLAAGISGIENSDYPEIIST 115 Query: 127 HNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + SM P RKGDI+ +++ I GD + Sbjct: 116 LFLSDEGMARLVGKRSSQGVSIVNVPTDSMEPTIRKGDIVFIDTTINCYIGDGIYAFSIN 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G++ K + ++S N YP + + Sbjct: 176 GELYIKRIQKLMSGGYRMISDNQAYPSEIISDE 208 >gi|295836144|ref|ZP_06823077.1| repressor LexA [Streptomyces sp. SPB74] gi|197695239|gb|EDY42172.1| repressor LexA [Streptomyces sp. SPB74] Length = 262 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 52/219 (23%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 61 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 110 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 P + P + + + +P Sbjct: 111 --RDPHRPRAYEVRGSDQPSPQPADTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 168 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 169 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 220 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 221 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 256 >gi|99080976|ref|YP_613130.1| LexA repressor [Ruegeria sp. TM1040] gi|122984325|sp|Q1GHJ8|LEXA_SILST RecName: Full=LexA repressor gi|99037256|gb|ABF63868.1| SOS-response transcriptional repressor, LexA [Ruegeria sp. TM1040] Length = 241 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 65/236 (27%), Gaps = 18/236 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ E I + ++ + PS K LD S + R R Sbjct: 1 MLTKKQLQLLEFIHKRLQKDGVPPSFDEMKTALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKK-------------EKEIPLLYFPPSGSGGFFD 105 + + + L +G+ Sbjct: 61 ARAIEVIRLPDSLGGGGALGAASDGFQPKVIAGGRGDSADGGAAAELKPVADTGATELTI 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163 G G + + Q + + SM+ GD++++ Sbjct: 121 MGRIAAGVPIEAINQAAAHVAVPNAMLSSSGQHYALEVRGDSMIDAGINDGDVVVIRETD 180 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + GD ++ + K + GR I+L + N YP + ++ R++ Sbjct: 181 AADNGDIVVALVEGHEATLKRFERK-GRMIELHAANPAYPTRSYTEDQVKVQGRLV 235 >gi|310779490|ref|YP_003967823.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309748813|gb|ADO83475.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 232 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 64/228 (28%), Gaps = 25/228 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF----------- 59 + + + + + A+ G+ + FN +R ++ + I Sbjct: 5 KFLKDRRKNLGYSQNKFAKSIGITQSYFNTIERGEVKNPPSEEVLDKISQGLQLNEKETE 64 Query: 60 --KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K LAA T ++ + E + S Sbjct: 65 TLKYLAALERTPDIIMKELSKLKKELTSAESLKANINLKESLPLIKGIPVYERISAGIGA 124 Query: 118 VGVPEIRSPHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + +I + SM P + G ++I +++ G+ Sbjct: 125 I----NDGEVTDYLSIPGIKNAQEVFAVNVWGDSMEPNIKDGSVIICRKDVEIRDGEIGA 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + K + + + LMS N YP + + + + +++ Sbjct: 181 FLLN-DEAYVKRI-KVTNQYVALMSDNPNYPPIFIGPGENLIAVGKVI 226 >gi|291295793|ref|YP_003507191.1| putative phage repressor [Meiothermus ruber DSM 1279] gi|290470752|gb|ADD28171.1| putative phage repressor [Meiothermus ruber DSM 1279] Length = 210 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 73/213 (34%), Gaps = 17/213 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + L+ +A AG+ T R + ST + ++ A + Sbjct: 4 DDVSLFVQKRIKELGLSVRKVASMAGISHTHLGNLIRGISSWKEVQFST--LERLAYALD 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L+ L + + +E+ P+ + G+ G + GVP + Sbjct: 62 IPVNDLVYLVRGKVPSLDHRERVTPVRFLIQPVR------GLASAGQPVDPEGVPVLAD- 114 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVL 185 + ++ + SM P GD + ++ + ++ G + + K + Sbjct: 115 -----VWRRGSLLYRVEGDSMAPTLHDGDRVYVDPSETELREGRIYICEIPGDGHTIKRV 169 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S N Y S++ + R+ Sbjct: 170 RRLDDGQLWLVSDNPAYRPW--RPSEMRIVGRV 200 >gi|198385590|gb|ACH86126.1| PrtR [Pseudomonas phage DVM-2008] Length = 267 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 77/248 (31%), Gaps = 33/248 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + ++H ++P+ L R+ G+ ++ ++ G+ PS + I K Sbjct: 15 MRVMQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISK 70 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSGVF 109 I + QL ++++ L S F Sbjct: 71 IAEYFAVSTDQLRGRADVVPAGNARRDEPHSELKDISLWDDETPVEEDEVSVPFLREVEL 130 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAI 163 G+ + E S G +++ + SMLP+ R G + +N+ Sbjct: 131 AAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGK 190 Query: 164 QVNCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIE 213 GD + G + K L I L S N ++ I Sbjct: 191 CGI-GDIVDGDLYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYTFQEMQDEQIV 248 Query: 214 WIARILWA 221 + + W Sbjct: 249 ILGHVFWW 256 >gi|149204799|ref|ZP_01881762.1| LexA repressor [Roseovarius sp. TM1035] gi|149141768|gb|EDM29821.1| LexA repressor [Roseovarius sp. TM1035] Length = 233 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 62/229 (27%), Gaps = 12/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIQKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I ++ + P + + + G G Sbjct: 61 ARALEIVRLPESLGGEAR-HSFSPRVIDGDLSDAPRPANAQPVEVAHAFEVPLMGRIAAG 119 Query: 113 NKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + + S + + + + SM GD++I+ + GD Sbjct: 120 VPIEAIAHAQHNVSVPSNMIRGAANHYALEVRGDSMIEAGINDGDVVIIRETSVADNGDI 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R G +I L + N Y + R++ Sbjct: 180 VVALIEDQEATLKRFYRR-GNAIALEAANPAYETRLFPEDQVRVQGRLV 227 >gi|39935968|ref|NP_948244.1| LexA repressor [Rhodopseudomonas palustris CGA009] gi|39649822|emb|CAE28344.1| SOS response transcriptional repressor, lexA [Rhodopseudomonas palustris CGA009] Length = 275 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 58/231 (25%), Gaps = 13/231 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----------EGR 49 M + ++ + I+ + + PS K LD S + R R Sbjct: 40 MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 99 Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 R + + + P GS G Sbjct: 100 ARAIEVIKLPDTGGMPGNSRRGFTPSVIEGNLGKVRPPSPTPAEDDHDRGSVAVPVMGRI 159 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168 G + + + + SM GD+ ++ + G Sbjct: 160 AAGTPIEALQSRSHTISVPADMLGSGEHYALEVRGDSMVEAGILDGDMALIQKNDVADTG 219 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K R SI L N Y V + + + +++ Sbjct: 220 DIVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 269 >gi|283786292|ref|YP_003366157.1| phage repressor protein [Citrobacter rodentium ICC168] gi|282949746|emb|CBG89365.1| putative phage repressor protein [Citrobacter rodentium ICC168] Length = 231 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 18/229 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + S LA G+D + ++ + G+ + + +S+ K A Sbjct: 2 NIGNRIRELRLARGMKISDLADAVGIDGANVSRVE----TGKQKSFTEQSLSKYANALGV 57 Query: 68 TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +L + + + + S S G + ++ Sbjct: 58 DVAELFTPSINETTVYKSSENNPVYGEDDPVFRVEMLDVSASAGMGFIQGSDVIDVIRSI 117 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 R+ + SM GD++ ++ +I GD + + Sbjct: 118 EYNSERAVALFGGRTPDTVKVINVRGDSMADTIEPGDLIFVDVSINEFDGDGIYVFGFDE 177 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWA-SQ 223 I K L I ++S N Y +V+ +++ + SQ Sbjct: 178 KIYVKRLQMIPD-KILVISDNPKYREWSVDQSNEDRFYVFGKVMLSQSQ 225 >gi|330807816|ref|YP_004352278.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375924|gb|AEA67274.1| putative Transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 247 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 77/248 (31%), Gaps = 33/248 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + ++H ++P+ L R+ G+ ++ ++ G+ PS + I K Sbjct: 1 MRVMQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISK 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSGVF 109 I + QL ++++ L S F Sbjct: 57 IAEYFAVSTDQLRGRADVVPAGNARRDEPHSELKDISLWDDETPVEEDEVSVPFLREVEL 116 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAI 163 G+ + E S G +++ + SMLP+ R G + +N+ Sbjct: 117 AAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGK 176 Query: 164 QVNCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIE 213 GD + G + K L I L S N ++ I Sbjct: 177 CGI-GDIVDGDLYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYTFQEMQDEQIV 234 Query: 214 WIARILWA 221 + + W Sbjct: 235 ILGHVFWW 242 >gi|85374133|ref|YP_458195.1| LexA repressor [Erythrobacter litoralis HTCC2594] gi|123293744|sp|Q2NA93|LEXA_ERYLH RecName: Full=LexA repressor gi|84787216|gb|ABC63398.1| SOS-response transcriptional repressor [Erythrobacter litoralis HTCC2594] Length = 233 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 54/227 (23%), Gaps = 13/227 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--R 51 M + ++ I + E ++PS + L S + + G R R Sbjct: 1 MLTAKQHELIRFIQQRLEETGISPSFEEMKEALDLKSKSGVHRLISALEERGFIRRLPNR 60 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + E + + + + + + G Sbjct: 61 ARALEILKQPEDVVGGGAKAAQSGSEASNVVDIRTAQAKTVPAPINDVVEIPLH-GRIAA 119 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 G + + P + SM GD ++ G+ Sbjct: 120 GAPIEALEDHQSL-PVPAALLGPGDHYALEVSGDSMIEAGIFDGDFALIRRTDSARDGEI 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++ + K L + L N Y + ++ + Sbjct: 179 VVALVNNEEATLKYLHRDS-GRVRLDPANASYEAQVYDPHQVQVQGK 224 >gi|168260980|ref|ZP_02682953.1| CI protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|307311055|ref|ZP_07590699.1| transcriptional regulator, XRE family [Escherichia coli W] gi|205349860|gb|EDZ36491.1| CI protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|306908561|gb|EFN39058.1| transcriptional regulator, XRE family [Escherichia coli W] gi|315061677|gb|ADT76004.1| putative CI repressor [Escherichia coli W] gi|323377741|gb|ADX50009.1| phage repressor like transcriptional regulator, XRE family [Escherichia coli KO11] Length = 217 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 15/214 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS + I + Sbjct: 8 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 62 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129 +P F G+ V + S Sbjct: 63 HDGTFSPAGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 122 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 ++ T P + G +++++ V GD + + + K LI Sbjct: 123 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 179 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 180 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 210 >gi|163736564|ref|ZP_02143983.1| LexA repressor [Phaeobacter gallaeciensis BS107] gi|161390434|gb|EDQ14784.1| LexA repressor [Phaeobacter gallaeciensis BS107] Length = 224 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 19/228 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + + I+ ++ + PS K LD S + R R Sbjct: 1 MLTKKQLDLLDFINTRLQQDGVPPSFDEMKVALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I ++ + T P + + L + G + Sbjct: 61 ARAIEIIRLPDSLGNTAEAAPAAPGPANQVSAPAMIAAMELPVMGRIAAGVPIEAINQVS 120 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171 + V VP + Q Q + + SM GDI+++ + GD + Sbjct: 121 H---QVAVPASM------LSAQGQHFALEVRGDSMIEAGINDGDIVVIRETAVADNGDVV 171 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K + + G +I L + N Y ++ R++ Sbjct: 172 VALVEGQEATLKRIYRK-GSTIALEAANPAYETRRYPQDQVKVQGRLV 218 >gi|212710117|ref|ZP_03318245.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] gi|212687324|gb|EEB46852.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 28/226 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIF 59 M ++ I E + + E L+ + LA+ G S + R S + Sbjct: 1 MKKI-NEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGE-----RKISADDAL 54 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 I A + +L+ SD + E PLL +G+ +S + + + Sbjct: 55 VISEALGVSPAELMFGTQSDQVISN---YEYPLLTKIQAGAFTE-NSNSYTEKDAIAWIP 110 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLI 173 + + + SM P + +G +++++ VN GD + Sbjct: 111 T---------AKKASERAFWLEVEGHSMTAAQGGKPSFPEGMLILIDPKEPVNVGDFCIA 161 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K LI G++ L LN + + + + E I +++ Sbjct: 162 RLNGNEFTFKKLIRESGQTF-LEPLNPKFDLIPIN-ENCEIIGKVI 205 >gi|115524578|ref|YP_781489.1| LexA repressor [Rhodopseudomonas palustris BisA53] gi|122296173|sp|Q07NH5|LEXA_RHOP5 RecName: Full=LexA repressor gi|115518525|gb|ABJ06509.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas palustris BisA53] Length = 237 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + ++ I+ + + PS K LD S + R R P+ Sbjct: 1 MLTRKQFELLRFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTE-------KKEKEIPLLYFPPSGSGGFFDSGV 108 +++ I + + I + G Sbjct: 61 ARAIEVIKLPEFGINGGGQTRRGFTPSVIEGHLGKVRPHASIGSDEDSHDRNVAVPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G + + + + SM+ GD+ ++ + Sbjct: 121 IAAGTPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVDAGILDGDMALIQKNESADT 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K R SI L N Y V + + + +++ Sbjct: 181 GDIVVALIDEEEATLKRFRRRGA-SIALEPANSAYEVRILPPNRVRIQGKLV 231 >gi|218690255|ref|YP_002398467.1| Repressor protein CI from phage [Escherichia coli ED1a] gi|218427819|emb|CAR08732.2| Repressor protein CI from phage [Escherichia coli ED1a] Length = 215 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 28/226 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H+ I E I + E L+ + LA+ G S + E R S + Sbjct: 1 MKTM-HEIIGERIKSLREAKGLSQAQLAKLCGWAAPS----RLGNYELGTRKVSADDALV 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + AA + +++ ++ ++ F +G F + G + + V Sbjct: 56 LGAALGVSPAKIMFGED-----SDAVFRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPT 110 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174 S + + + SM P + +G +++++ A V GD + Sbjct: 111 TTKASE---------KAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVAS 161 Query: 175 PRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K G S L+ LN Y + + I +++ Sbjct: 162 ANGDSEATFKKYEKDAGVSY-LVPLNPAYRTLDCDHT-CRIIGKVV 205 >gi|169333724|ref|ZP_02860917.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] gi|169259573|gb|EDS73539.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] Length = 197 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 27/213 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + + H +T LA LD +S K + GI PS +++ KI A N +I Sbjct: 3 GEKLRSLRKEHGMTQVDLANALDLDKSSIAKYESAGII-----PSVDTLQKISALFNVSI 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL+ PF D + ++ +G G N Sbjct: 58 DYLLNAPFGDINNVMN----VEIIGTVVAGRDGIATYEFLGISQAIN------------- 100 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + K + SM P +GD+ ++ ++ GD ++ + V K + Sbjct: 101 -INNKDEYKYLKVRGDSMAPQILEGDLALVRLQPDIDSGDLAVVIIGGEEGVIKKVQK-T 158 Query: 190 GRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 SI L+S N Y +M ++ +++ Sbjct: 159 DNSISLISFNPMYDTRVFIGKDMEQLQIFGKVV 191 >gi|157692462|ref|YP_001486924.1| LexA repressor [Bacillus pumilus SAFR-032] gi|166990797|sp|A8FDP7|LEXA_BACP2 RecName: Full=LexA repressor gi|157681220|gb|ABV62364.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 206 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 36/227 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++ I I + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQLDILTFIKEEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + ++L E+ + P + N Sbjct: 61 TKPRAIEVLD-------------------EEELNIPKSAVMNVPVIGKVTAGLPITAVEN 101 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +PE + A Q + SM+ D +I+ N GD ++ Sbjct: 102 VEEYFPLPETFA------APDEQVFMLEIMGESMIDAGILDKDYVIVRQQSTANNGDIVV 155 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N ++ + + +++ Sbjct: 156 AMTEEDEATVKRFYK-EDTHFRLQPENPSMEPIILQN--VSILGKVI 199 >gi|86742192|ref|YP_482592.1| LexA repressor [Frankia sp. CcI3] gi|123737138|sp|Q2J779|LEXA_FRASC RecName: Full=LexA repressor gi|86569054|gb|ABD12863.1| SOS-response transcriptional repressor, LexA [Frankia sp. CcI3] Length = 256 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 12/222 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 +++ E I ER PS + GL TS ++ K +G R P+ + Sbjct: 33 QRRVLEVIRAAVERRGYPPSVREIGEAVGLTSTSSVAHQLKVLEEKGYLRRDPNRPRAME 92 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG--VFPTGNKWNTV 118 +L + + + T E S S + G Sbjct: 93 VLTVEHPRQRADVGAGATTVAGTIPIVGEAAPGTTEGSKSDAAYVPVLGRIAAGGPILAE 152 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E P + + SM+ GD +++ + G+ + Sbjct: 153 QAVEDVFPLPREIVGEGTLFLLRVVGDSMINAAICDGDWVVVRQQPVADNGEIVAAMID- 211 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L R I L N + D + RI+ Sbjct: 212 GEATVKRL-RVRDGKIWLHPENSAFADI--PGEDATILGRIV 250 >gi|60099615|gb|AAX12919.1| transcriptional regulator [Escherichia blattae DSM 4481] Length = 246 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 75/229 (32%), Gaps = 23/229 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ + + A AG+ P+ N+ G P ++ K + E + Sbjct: 19 SRLRALLKKFK-SNNAFAVAAGISPSGLNRLLEG---GYPTLPILIALAKAGGVSVEWLS 74 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-------GGFFDSGVFPTGNK-WNTVGVPE 122 DL S + + + + + G WN P Sbjct: 75 TGGDLVESKLPALVQGDVVGATVTDVKGNNVDLEEFVFVPRYNVCASAGYGSWNDDETPM 134 Query: 123 IRSPHNGIY------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + A Q + SM + DI+++N A + + + + Sbjct: 135 FTVSFRRFWVTNHLKADPAQLSVISVYGDSMEGVLNDKDIILINHADK-EPREGIYVLRI 193 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI----EWIARILWA 221 G ++ K + G + + S N Y ++ ++D+ + + +++W Sbjct: 194 DGQLIVKRVQRLPGSLLRITSTNPAYEPFSINLNDVPSDFDIVGKVVWY 242 >gi|313902000|ref|ZP_07835415.1| SOS-response transcriptional repressor, LexA [Thermaerobacter subterraneus DSM 13965] gi|313467724|gb|EFR63223.1| SOS-response transcriptional repressor, LexA [Thermaerobacter subterraneus DSM 13965] Length = 201 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 63/229 (27%), Gaps = 45/229 (19%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51 M + ++I + I PS + GL TS + +R G R Sbjct: 1 MEELTRRQRQILDYIKASIRERGYPPSVREIGEAVGLKSTSTVHTYLARLERKGYI--RR 58 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 P+ ++L + + + + Sbjct: 59 DPTKPRAIEVLEESGLRTRTVPVPLVGQVTAGQP----------------------ILAV 96 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 N + + +P P + + + + SM+ GD +I+ + GD Sbjct: 97 ENIEDVLPLPTELVP-------EGEVFALRIRGDSMIGAGILDGDYVIVRRQETADNGDI 149 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R I L N V + + +++ Sbjct: 150 VVALID-DEATVKRFYRERDG-IRLQPENPAMEPIRVRTA--RILGKVV 194 >gi|218890289|ref|YP_002439153.1| putative c repressor [Pseudomonas aeruginosa LESB58] gi|218770512|emb|CAW26277.1| putative c repressor [Pseudomonas aeruginosa LESB58] Length = 237 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 22/208 (10%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + G +++ GL + +P+ + + +I A + L Sbjct: 38 SLRGFSKECGLSEATLRSYLSGET-----FPTLDRLEQIAKAAGTSAMWL--------AF 84 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT------Q 136 E S + G+ T G + Y+++ Sbjct: 85 GTPTSAEDSREKGDDSYAYIPLYDARVSAGHGSWTEGARILAQLAFTRYSLRKQGLEIAN 144 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + + SM PL GD ++++ + + + + + AK + + + ++ Sbjct: 145 MSAVRIGGDSMEPLLSDGDTVMIDHSCNEVRDEAVYVIRLDDHLYAKRVQRQINGGLAII 204 Query: 197 SLNCCYPVDTV---EMSDIEWIARILWA 221 S N Y V ++ ++ I R++W+ Sbjct: 205 SANPAYQTMFVSKQDLEAVDIIGRVVWS 232 >gi|56963932|ref|YP_175663.1| LexA repressor [Bacillus clausii KSM-K16] gi|71658808|sp|Q5WG03|LEXA_BACSK RecName: Full=LexA repressor gi|56910175|dbj|BAD64702.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16] Length = 208 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 32/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M+ S ++I I ++ PS + GL ++ + R +G R Sbjct: 1 MSKLSKRQEEILAYIKDEVKKKGYPPSVREIGEAVGLASSSTVHGHLARLEKKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + + K + N Sbjct: 61 TKPRAIEVLSLGFDNDTFVKKETASFIPVIGKVTAGVPIT---------------AVENV 105 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + + +P+ A Q SM GD +I+ + GD ++ Sbjct: 106 EDYLPLPDHL-------AAYDNTYALVIQGESMIEAGIYDGDQVIVRQQQTADNGDIIVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N + + + +++ Sbjct: 159 MTEDNEATVKRFFREKD-YIRLQPENSSMEPIIL--ENCTILGKVI 201 >gi|327254477|gb|EGE66099.1| helix-turn-helix family protein [Escherichia coli STEC_7v] Length = 237 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 73/228 (32%), Gaps = 17/228 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E ++ ++ S LA G+ + K G + + K+ + Sbjct: 8 ERLNAAMSLAGVSQSQLADMVGISQPAIQKMSSGKTNGSRKMVELANALKVRPEWLSSGI 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRS 125 + + + ++ +++ + F + G+ + S Sbjct: 68 GEMRDGAHEEPSNVRESSLKAVVWEDIKRNDDEFVALPLLNVSLSAGSGSCELEESSEFS 127 Query: 126 PHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + + SM P GD++ +N+ + ++ Sbjct: 128 LVFRKHYLKKMGVSERSAKLVRVVGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSDL 187 Query: 180 IVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222 + K LI S+ + S+N YP + ++ + + I R+ W+S Sbjct: 188 LRVKTLI-ATPTSVIIRSINREEYPDEVMDRDEFHETVRIIGRVFWSS 234 >gi|152965474|ref|YP_001361258.1| SOS-response transcriptional repressor, LexA [Kineococcus radiotolerans SRS30216] gi|151359991|gb|ABS02994.1| SOS-response transcriptional repressor, LexA [Kineococcus radiotolerans SRS30216] Length = 244 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 69/218 (31%), Gaps = 22/218 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +++ AI E+ PS + + GL P+S ++ K G R + Sbjct: 37 QRRVLAAIQECVEQRGYPPSMREIGQAVGLTSPSSVAHQVKTLEKLGYLR--KDPRRPRT 94 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L + L ++ + E + + + +GG + + +P Sbjct: 95 LEVVAPSSAGPGLLDGTEAGSAENRPRPRYVPVVGRIAAGGPILAEQL----VEDVFALP 150 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM GD +++ GD ++ G+ Sbjct: 151 EQLVGT-------GEHFMLRVVGESMLEAAICDGDWVVVRQQPTAENGD-VVAAMIDGEA 202 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 KVL + + L+ N + + + + R+ Sbjct: 203 TVKVLQRK-DGHVKLLPRNPLFDPI--DGDEATILGRV 237 >gi|119026133|ref|YP_909978.1| LexA repressor [Bifidobacterium adolescentis ATCC 15703] gi|154488907|ref|ZP_02029756.1| hypothetical protein BIFADO_02216 [Bifidobacterium adolescentis L2-32] gi|171473029|sp|A1A2G3|LEXA_BIFAA RecName: Full=LexA repressor gi|118765717|dbj|BAF39896.1| LexA repressor [Bifidobacterium adolescentis ATCC 15703] gi|154083044|gb|EDN82089.1| hypothetical protein BIFADO_02216 [Bifidobacterium adolescentis L2-32] Length = 257 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +K+ +AI + PS + AGL P+S ++ + +G R + + Sbjct: 44 QRKVLDAIKTHLAKQGFAPSFREIGEAAGLKSPSSVKHQLQVLDEKGFIRMNANKGRAIE 103 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + N+ + + I + P + + + + +P Sbjct: 104 VVNLNDEEPNGKVAQVIPFPSQDDACGSIMASHDVPLVGRIAAGVPITAEQHVDDVMRLP 163 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ GD +++ GD + + Sbjct: 164 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQNSAENGDIVAALLD-DEA 215 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L+ N Y + + E + +++ Sbjct: 216 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 251 >gi|332533845|ref|ZP_08409701.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] gi|332036776|gb|EGI73239.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] Length = 206 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 78/216 (36%), Gaps = 19/216 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN-E 67 + E I + LT + LA AG+ S K + + R + +++ L T Sbjct: 3 VGERIKKRRVELGLTQANLAELAGIIQQSLQKIESGSTK-NPR--NLKALADALDCTPEF 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + S+ + +PL+ + +G+ + P S Sbjct: 60 LQFGIAESINSNVSPGPDIKSTVPLISWVQAGAWSEINEIR---ECDAERFMCPVNAS-- 114 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLI 186 ++ + Q SM P + +GD++ ++ + G ++ + K LI Sbjct: 115 -------SKTFALRVQGVSMEPKFYEGDLIFVDPEAECIHGSYVVARLDDDNHATFKQLI 167 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221 G L + N +P + ++ + + ++++A Sbjct: 168 IESGHKF-LKAANPNWPEQLIPINGNCTLVGKVVFA 202 >gi|254474906|ref|ZP_05088292.1| LexA repressor [Ruegeria sp. R11] gi|214029149|gb|EEB69984.1| LexA repressor [Ruegeria sp. R11] Length = 226 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 3/221 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I ++ + PS K LD S + R R + Sbjct: 1 MLTKKQLDLLDFIHTRLQKDGVPPSFDEMKVALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 A + L D + + G G + Sbjct: 61 ARAIEIIRLPDSLGGTVEDVAEAPTPANQGTAPAAATIAAMELPVMGRIAAGVPIEAINQ 120 Query: 121 PEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + Q Q + + SM GDI+++ + GD ++ Sbjct: 121 ISHQVAVPASMLSAQGQHFALEVRGDSMIEAGINDGDIVVIRETSVADDGDVVVALVEGQ 180 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + G S+ L + N Y ++ R++ Sbjct: 181 EATLKRIYRK-GTSVALEAANPAYETRRYRQDQVKVQGRLV 220 >gi|260599222|ref|YP_003211793.1| 26 kDa repressor protein [Cronobacter turicensis z3032] gi|260218399|emb|CBA33475.1| 26 kDa repressor protein [Cronobacter turicensis z3032] Length = 245 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 17/231 (7%) Query: 4 FSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 SH+ + E + + T LA+ G+ +S NK R +T ++ Sbjct: 13 RSHEDLTMNFSERLAKAMADAGYTQGALAKAVGMAQSSVNKLLNGANGSR----NTVALA 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-- 117 +IL + E + L + +Y +++ Sbjct: 69 RILGVSPEWLADGQGLMRPLTTERKSAAASGADVYRVEVFDVRASAGSGVMIRDEFIETI 128 Query: 118 --VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + SM + D + ++ ++ GD + I Sbjct: 129 KSIEYSSEEARSLFGSRPADHIKMIAVNGDSMSGTFEPRDQIFVDVSVDFFDGDGIYIFT 188 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSD--IEWIARILWASQ 223 + K L + + + ++S N Y + ++ + + A++L SQ Sbjct: 189 LDNYVYIKRLQLQH-KRLAVISDNKKYETWYITDIDESGLNIRAKVL-VSQ 237 >gi|294478947|gb|ADE87512.1| transcriptional regulator [Deep-sea thermophilic phage D6E] Length = 206 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 26/215 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KK+ + I++ + L+ L + GL + + + E R +I + L Sbjct: 6 KKVGQNIEKYRKMKGLSAEELGNRVGLTKKTIRRYE--TGEIRIINDRVLAIAEALDVDP 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + D+ T + G GN E Sbjct: 64 ADLYEGTDVVEFTDETEKLPIV------------------GAISCGNGTVAYETIEGYEE 105 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + + SM+ G +L++ V GD + D V K + Sbjct: 106 VPKSWIKGGKYFFLRAKGDSMINAHITDGSLLLIRRQDDVENGDIAAVLID-DDAVLKRV 164 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIAR 217 G +I L S N Y + D + I + Sbjct: 165 YK-SGDTIILQSENPAYKPIILHKDDMKNVRIIGK 198 >gi|320182370|gb|EFW57268.1| putative transcriptional regulator [Shigella boydii ATCC 9905] gi|323170913|gb|EFZ56563.1| peptidase S24-like family protein [Escherichia coli LT-68] Length = 224 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 71/222 (31%), Gaps = 17/222 (7%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 ++ S LA G+ + K G + + K+ + + Sbjct: 1 MRSAGVSQSQLADMVGISQPAIQKMSSGKTNGSRKMVELANALKVRPEWLSSGIGEMRDG 60 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRSPHNGIY 131 + + ++ +++ + F + G+ + S Y Sbjct: 61 THEEPSNIRESSLKAVVWEDIKKNDDEFVALPLLNVSLSAGSGSCEIEESSEFSLVFRKY 120 Query: 132 AI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + ++ + SM P GD++ +N+ + ++ + K L Sbjct: 121 YLKKMGVTESSAKLVRVTGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSDLLRVKTL 180 Query: 186 ISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222 I S+ + S+N YP + ++ + + I R+ W+S Sbjct: 181 I-ATPTSVIIRSINREEYPDEVMDRDEFHKTVRIIGRVFWSS 221 >gi|312111541|ref|YP_003989857.1| LexA family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311216642|gb|ADP75246.1| transcriptional repressor, LexA family [Geobacillus sp. Y4.1MC1] Length = 207 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++I + I + + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQQQILDFIKKEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL E + P + N Sbjct: 61 TKPRAIEILD------------------ADFSARNETDDVISVPIIGKVTAGQPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + +P + + + + SM GD +I+ + GD ++ Sbjct: 103 IEDYFPLP------KRLISSEDHVFMLEVMGDSMIEAGILDGDYVIVRQQQSADNGDIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N V D + +++ Sbjct: 157 AMTEENEATVKRFFKEKD-HIRLQPENSNLEPIIVR--DCTILGKVI 200 >gi|310780644|ref|YP_003968975.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309749967|gb|ADO84627.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 224 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 62/220 (28%), Gaps = 13/220 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI E I + E NL+ L+ K L+ + ++ + G + + E + KI + Sbjct: 4 KKIGEFIRKRRESLNLSQGQLSYKCDLETSVIHRIE----VGERKKINYEHLKKIATGLD 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPP------SGSGGFFDSGVFPTGNKWNTVGV 120 +L L S + + Sbjct: 60 MNYIELYKLAGIIEEDALSDYYLPDFNDKINQQIELISDTKVDTIPIYESVSAGCGYIPD 119 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + SM P ++++ ++ D + G+ Sbjct: 120 SVPLEYISLHLSGKENCIGIIVDGHSMEPTITDKAVIVMKKDTELKSKDIGVFLLN-GEA 178 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 K + I L S N Y V+ D +++ Sbjct: 179 YVKRFFKK-NNIIILYSDNSEYSPIIVDEYDDFIICGKVI 217 >gi|302542054|ref|ZP_07294396.1| repressor LexA [Streptomyces hygroscopicus ATCC 53653] gi|302459672|gb|EFL22765.1| repressor LexA [Streptomyces himastatinicus ATCC 53653] Length = 267 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 52/219 (23%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 66 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 115 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 P + P + + + +P Sbjct: 116 --RDPHRPRAYEVRGSDQPSAQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 173 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 174 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 225 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 226 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 261 >gi|56419863|ref|YP_147181.1| LexA repressor [Geobacillus kaustophilus HTA426] gi|261419534|ref|YP_003253216.1| LexA repressor [Geobacillus sp. Y412MC61] gi|297530496|ref|YP_003671771.1| transcriptional repressor, LexA family [Geobacillus sp. C56-T3] gi|319766350|ref|YP_004131851.1| transcriptional repressor, LexA family [Geobacillus sp. Y412MC52] gi|61213225|sp|Q5L0C3|LEXA_GEOKA RecName: Full=LexA repressor gi|56379705|dbj|BAD75613.1| transcriptional repressor of SOS regulon [Geobacillus kaustophilus HTA426] gi|261375991|gb|ACX78734.1| transcriptional repressor, LexA family [Geobacillus sp. Y412MC61] gi|297253748|gb|ADI27194.1| transcriptional repressor, LexA family [Geobacillus sp. C56-T3] gi|317111216|gb|ADU93708.1| transcriptional repressor, LexA family [Geobacillus sp. Y412MC52] Length = 207 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 67/227 (29%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++I E I + + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQQQILEFIKQEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL KE+E + P + N Sbjct: 61 TKPRAIEILDND------------------MAKEREKEEIISVPIIGKVTAGQPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +P+ + A + Q + SM GD +I+ N GD ++ Sbjct: 103 IEGYFPLPKRLA------AGEEQLFMLEVMGDSMIEAGILDGDYVIVRQQSSANNGDIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N V D + +++ Sbjct: 157 AMTEDNEATVKRFFKEKD-HIRLQPENAHLEPIIVR--DCTILGKVI 200 >gi|222085871|ref|YP_002544402.1| LexA repressor [Agrobacterium radiobacter K84] gi|254809083|sp|B9JEY4|LEXA_AGRRK RecName: Full=LexA repressor gi|221723319|gb|ACM26475.1| LexA repressor [Agrobacterium radiobacter K84] Length = 240 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 16/234 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGR------TTEKKEKEIPLLYFPPSGSGGFFDS 106 + K+ A + ++ S + + + Sbjct: 61 ARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVQPPAPAKPANDENNSAVSVPVM 120 Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165 G G + + + + + SM+ GD +I+ ++ Sbjct: 121 GRIAAGVPISAIQNNTHDITVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNSTTA 180 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 NPGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 233 >gi|138894847|ref|YP_001125300.1| LexA repressor [Geobacillus thermodenitrificans NG80-2] gi|166224569|sp|A4IMK1|LEXA_GEOTN RecName: Full=LexA repressor gi|134266360|gb|ABO66555.1| Transcriptional regulator [Geobacillus thermodenitrificans NG80-2] Length = 207 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++I E I + + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQQQILEFIKQEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL + KE+E + P + N Sbjct: 61 TKPRAIEILD------------------SDLTKEREKEEVISVPMIGKVTAGQPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + +P+ + A + Q + SM GD +I+ N GD ++ Sbjct: 103 IEDYFPLPKRLA------AGEKQLFMLEVMGDSMIEAGILDGDYVIVRQQSSANNGDIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N V D + +++ Sbjct: 157 AMTEENEATVKRFFKEKD-HIRLQPENVHLEPIIVR--DCTILGKVI 200 >gi|268610362|ref|ZP_06144089.1| SOS-response transcriptional repressor [Ruminococcus flavefaciens FD-1] Length = 217 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 15/216 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + +T LA G ++ K + + +I K L T Sbjct: 4 GERVLALRTEKGMTQDELALAVGYKSRSTIAKIESGERD--PHQSMIAAIAKALDTTPAY 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPEIRSP 126 + + S + + G N + Sbjct: 62 LMGWEESEQSPDKDKNLSKIPYTEEGTVLVPLIGKVAAGYSCHAEDNISEYIRTDGSSLK 121 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 Y + + SM P + D++++ +++ ++ D + K + Sbjct: 122 TGYDY------FWLEVKGDSMEPELHEKDLVLVQEQSELDAECYAVVTVDNEDGLVKQVQ 175 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 I L S+N YP E D I+ + R++ Sbjct: 176 -IDNTKITLKSINPYYPPRVFEKQDMNRIKIVGRVI 210 >gi|66395676|ref|YP_240035.1| ORF020 [Staphylococcus phage 47] gi|209363558|ref|YP_002267976.1| probable transcriptional repressor [Staphylococcus phage phi2958PVL] gi|257428267|ref|ZP_05604665.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 65-1322] gi|282905891|ref|ZP_06313746.1| transcriptional repressor [Staphylococcus aureus subsp. aureus Btn1260] gi|282919258|ref|ZP_06326993.1| transcriptional repressor [Staphylococcus aureus subsp. aureus C427] gi|284024543|ref|ZP_06378941.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 132] gi|62636100|gb|AAX91211.1| ORF020 [Staphylococcus phage 47] gi|208973059|dbj|BAG74375.1| probable transcriptional repressor [Staphylococcus phage phi2958PVL] gi|257275108|gb|EEV06595.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 65-1322] gi|282317068|gb|EFB47442.1| transcriptional repressor [Staphylococcus aureus subsp. aureus C427] gi|282331183|gb|EFB60697.1| transcriptional repressor [Staphylococcus aureus subsp. aureus Btn1260] Length = 204 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 73/214 (34%), Gaps = 21/214 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + NLT + G+ ++ K + IE R + I K+ A + + Sbjct: 5 IKSRRKELNLTLEQVGDLVGVGKSTVRKWETGDIENMKR----DKIVKLAKALRVSPSYI 60 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + K+IP++ +G + N + + Sbjct: 61 MGIEDEKPQLETIPVKKIPVVSKISAGMPI------YTEENLIDYIYF------ATKNLN 108 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 ++ + SM L++ GD++++ V G ++ + K + Sbjct: 109 SNKEEFGLQVSGDSMDKLFQDGDVVVVEKDSTVENGQLGVVLVNGYNGTVKRIRY-NNDQ 167 Query: 193 IDLMSL--NCCYPVDTVEMSD-IEWIARILWASQ 223 I L+ N + D ++ + R++ ASQ Sbjct: 168 IILIPESNNPSHYPQVYGKDDEVKIVGRVV-ASQ 200 >gi|145593998|ref|YP_001158295.1| LexA repressor [Salinispora tropica CNB-440] gi|145303335|gb|ABP53917.1| SOS-response transcriptional repressor, LexA [Salinispora tropica CNB-440] Length = 261 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 ++I E I E+H PS + G + P+S + K +G R Sbjct: 60 QRRILEFIRTWVEQHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLR---------- 109 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + P D E + P + P + + +P Sbjct: 110 --RDPNRPRAVDVRPPGDALDDEAALAQRPAPAYVPMLGRIAAGGPILAEQAIEDIFPLP 167 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + + SML GD +++ GD + G+ Sbjct: 168 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPTAESGDIVAAMLD-GEA 219 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + LM N + D + R++ Sbjct: 220 TVKTYRRR-DGHVWLMPQNPAFDPI--AGDDATIMGRVV 255 >gi|317129106|ref|YP_004095388.1| transcriptional repressor, LexA family [Bacillus cellulosilyticus DSM 2522] gi|315474054|gb|ADU30657.1| transcriptional repressor, LexA family [Bacillus cellulosilyticus DSM 2522] Length = 208 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 33/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 MT S + I + I + PS + GL ++ + R +G R Sbjct: 2 MTKLSKRQQDILDYIKEEVKEKGYPPSVREIGEAVGLASSSTVHGHLSRLEKKGLIRR-- 59 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T +++ L R +E +P++ +G + N Sbjct: 60 --------DPTKPRAIEVIGLNDEARRVSESPSVYVPVIGKVTAG------DPITAIENV 105 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + + +P + + SM GD +++ N GD ++ Sbjct: 106 EDYLPLPAS-------FVHDENSFILEISGDSMIEAGIFDGDYVVVRQQQNANNGDIVVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + + + +++ Sbjct: 159 MTEEDEATVKRFFKEKD-YFRLQPENATLEPIILRS--VTILGKVI 201 >gi|144900044|emb|CAM76908.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 222 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 9/215 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + +T +A AG++ + R GR+ PS E + I A N Sbjct: 7 DRLRARSRQLGMTAGRVAELAGVNRSFVYDIMR----GRSENPSLEKLDLISEALNVERN 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSP-HN 128 LL + E + + S G ++ RS + Sbjct: 63 WLLHGIGGVDGESPIMEDPMGVFVSISSVQVSASMGGGNLVSDEVENGEPYHFQRSWILH 122 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + A + SM+P GD+++++ + ++ + + +VAK L Sbjct: 123 DLKADPNNLRIMHVEGDSMMPTLHSGDVVLVDLSKRLPTPPGIFVLFDGMGLVAKRLEHI 182 Query: 189 RGR---SIDLMSLNCCYPVDTVEMSDIEWIARILW 220 + ++S N Y ++ I RI W Sbjct: 183 PNHDPPKVRVISDNTFYTPYERTADEVNIIGRIRW 217 >gi|212715543|ref|ZP_03323671.1| hypothetical protein BIFCAT_00441 [Bifidobacterium catenulatum DSM 16992] gi|212660910|gb|EEB21485.1| hypothetical protein BIFCAT_00441 [Bifidobacterium catenulatum DSM 16992] Length = 237 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +K+ AI + PS + AGL P+S ++ + +G R + + Sbjct: 24 QRKVLGAIKKHLAEQGFAPSFREIGEAAGLKSPSSVKHQLQVLDEKGFIRMNANKGRAIE 83 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + ++T + I P + + + + +P Sbjct: 84 VVSFDDTSSSSKATQVIPFPSQSDSSGSIMASRDVPLVGRIAAGVPITAEQHVDDVMRLP 143 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ GD +++ GD + + Sbjct: 144 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQNTAENGDIVAALLD-DEA 195 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L+ N Y + + E + +++ Sbjct: 196 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 231 >gi|16764259|ref|NP_459874.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|169257171|ref|YP_001700549.1| putative transcriptional regulator (repressor) [Salmonella phage Fels-1] gi|16419406|gb|AAL19833.1| predicted Fels-1 prophage transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Length = 231 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 16/218 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + + +T + LA D + ++ +R S +SI KI A Sbjct: 4 KVGQKIRELRKARKMTITQLAALTDWDVGNISRLERGMQGY-----SAQSIQKIAEALQV 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L +D T K GN ++ E+ S Sbjct: 59 PVSELFS-TETDSDTVNKYSVLSLSHQRRNDVYRVDVMDVSASAGNGNSSRDFIEVISSI 117 Query: 128 NGIYAIQTQDTRHK---------TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + H+ + SM GD++ ++ + GD + + +G Sbjct: 118 EYVTEEAKTLFGHRPANQVKLINVRGDSMQGTIEPGDLIFVDIGVNYFDGDGIYVFDFSG 177 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 D+ K L + + + L S N Y + ++E + Sbjct: 178 DLYVKRLQKIKSQLLVL-SDNPLYKEWQITKEEMEMLH 214 >gi|192291621|ref|YP_001992226.1| LexA repressor [Rhodopseudomonas palustris TIE-1] gi|47605802|sp|P61614|LEXA_RHOPA RecName: Full=LexA repressor gi|229621744|sp|B3Q6P2|LEXA_RHOPT RecName: Full=LexA repressor gi|192285370|gb|ACF01751.1| transcriptional repressor, LexA family [Rhodopseudomonas palustris TIE-1] Length = 236 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 58/231 (25%), Gaps = 13/231 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----------EGR 49 M + ++ + I+ + + PS K LD S + R R Sbjct: 1 MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 R + + + P GS G Sbjct: 61 ARAIEVIKLPDTGGMPGNSRRGFTPSVIEGNLGKVRPPSPTPAEDDHDRGSVAVPVMGRI 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168 G + + + + SM GD+ ++ + G Sbjct: 121 AAGTPIEALQSRSHTISVPADMLGSGEHYALEVRGDSMVEAGILDGDMALIQKNDVADTG 180 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K R SI L N Y V + + + +++ Sbjct: 181 DIVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 230 >gi|330810754|ref|YP_004355216.1| phage regulatory protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378862|gb|AEA70212.1| Putative phage regulatory protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 232 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 23/231 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M++ E I + LT LA K G++ ++ + P K Sbjct: 13 MSTL-----AERIKEARKHAVLTQKALALKVGVEQPVISQLETGKNLQSAHLP------K 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG- 119 I L D + ++ S G V Sbjct: 62 IAHVCGVNAIWLSDNIGPMIDSHREESNVSTAPQLKQSFRYPVI--SWVAAGAWSEAVEP 119 Query: 120 VPEIRSPHNGI--YAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL- 172 P S Y + + + SM +G ++++++ ++ G ++ Sbjct: 120 YPAGFSDRYEFSEYDSKGPAFWLEVKGDSMTSPVGTSIAQGSLILVDTEVEAAPGKLVVA 179 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 P + + K L+S G + L LN Y ++ D + ++ A+Q Sbjct: 180 KLPDSNEATFKKLVSD-GGKLFLKPLNPAYRIEEFT-EDCRIVGVVVQATQ 228 >gi|315268697|gb|ADT95550.1| transcriptional regulator, XRE family [Shewanella baltica OS678] Length = 235 Score = 99.1 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 33/223 (14%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +T S LA K G+ + G R PS E I ++ L Sbjct: 23 VKTRMKEAGVTQSMLAEKMGMSQGAIAHWL-----GGKRKPSIEDIASMMNIVGIRHMTL 77 Query: 73 LDLPFSDGRTT-----------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 D + P++ + +G+ P Sbjct: 78 GADGLIDYPDSVLGNTEELPAKISYVNSFPVISYVQAGAWTEAVESC-PASALDEWQDTT 136 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPR 176 E S + Q SM + +G ++++++ G ++ Sbjct: 137 ERTSE---------NCFWLRVQGDSMTTPAGISFPEGTLILIDAEKDYQNGSFVVAKLTD 187 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L+ G+ L LN YP + + + I ++ Sbjct: 188 INEATFKKLVIDAGQKF-LRPLNTAYPTLPINGN-CKIIGVVV 228 >gi|296116167|ref|ZP_06834785.1| LexA repressor [Gluconacetobacter hansenii ATCC 23769] gi|295977273|gb|EFG84033.1| LexA repressor [Gluconacetobacter hansenii ATCC 23769] Length = 235 Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 67/229 (29%), Gaps = 12/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + ++ IDR ++ +PS + GL + ++ +R + ++ Sbjct: 1 MLTRKQHELLLYIDRHLKQTGFSPSFDEMKDALGLRSKSGIHRLISALEERGFVRRKHHR 60 Query: 53 PSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + +I + A + +D+ + + + + G Sbjct: 61 ARALEVVQIPQIEAVEPASARGVDMFSPTVIKGDFTPALPAVQVADTANAVQVPFLGRIA 120 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169 G+ + + SM GD +I+ Q G+ Sbjct: 121 AGHAIEAISDASRLIDVPAGLIGVGTYYALEVCGDSMIEAGILDGDTVIVRQDRQAENGE 180 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ ++ K L + G +I L N Y + + I Sbjct: 181 IVVALIEGQEVTLKRLRRK-GSTIALEPANARYETRIMPADKVAIQGSI 228 >gi|158313084|ref|YP_001505592.1| LexA repressor [Frankia sp. EAN1pec] gi|229621220|sp|A8L6K4|LEXA_FRASN RecName: Full=LexA repressor gi|158108489|gb|ABW10686.1| SOS-response transcriptional repressor, LexA [Frankia sp. EAN1pec] Length = 250 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 63/222 (28%), Gaps = 19/222 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 KK+ E I ER PS + GL TS ++ K +G R P+ + Sbjct: 34 QKKVLEVIRSAVERRGYPPSVREIGEAVGLTSTSSVAHQLKVLQEKGFLRRDPNRPRAME 93 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK--EIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +L + + E + P + + Sbjct: 94 VLPIGGAKTGGRSRAGAAAAAGAPAETTALEAGTPTYVPLVGRIAAGGPILAEQAIEDVY 153 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P+ + K SM+ GD +++ + G+ + Sbjct: 154 PLPKEIVG-------EGTLFLLKVVGQSMINAAICDGDFVVVRQQPVADNGEIVAAMID- 205 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K +R + L N + D + RI+ Sbjct: 206 GEATVKRF-RQRDGRVWLAPENPAFSDI--PAEDATILGRIV 244 >gi|312870855|ref|ZP_07730960.1| peptidase S24-like protein [Lactobacillus iners LEAF 3008A-a] gi|312872164|ref|ZP_07732237.1| peptidase S24-like protein [Lactobacillus iners LEAF 2062A-h1] gi|311092248|gb|EFQ50619.1| peptidase S24-like protein [Lactobacillus iners LEAF 2062A-h1] gi|311093545|gb|EFQ51884.1| peptidase S24-like protein [Lactobacillus iners LEAF 3008A-a] Length = 222 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 72/229 (31%), Gaps = 20/229 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++++I + ++R+ ++ ++RK + +S ++ R R + + + Sbjct: 1 MRNNEEIMQLLERLKADKKMSLREISRKTDIAVSSISRYFN-----RTRDFPLDKLDRFA 55 Query: 63 AATNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDS-------GVFPT 111 A N + +L++ TT ++++ + + + G Sbjct: 56 KAFNVSPEYILNVSKPCDITTIYNQLHEKRKAKVYNYAKEQLDEQLNEKRSIYVVGTSAA 115 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G + D + SM P I+ + + G+ Sbjct: 116 GEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIG 172 Query: 172 LIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + K + I L S+N Y + + +++ Sbjct: 173 IFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 221 >gi|323177107|gb|EFZ62697.1| repressor protein CI [Escherichia coli 1180] Length = 217 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 15/214 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS + I + Sbjct: 8 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 62 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129 +P F G+ V + S Sbjct: 63 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 122 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 ++ T P + G +++++ V GD + + + K LI Sbjct: 123 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 179 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 180 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 210 >gi|331669090|ref|ZP_08369938.1| repressor protein CI [Escherichia coli TA271] gi|331064284|gb|EGI36195.1| repressor protein CI [Escherichia coli TA271] Length = 244 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 15/214 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS + I + Sbjct: 35 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 89 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129 +P F G+ V + S Sbjct: 90 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 149 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 ++ T P + G +++++ V GD + + + K LI Sbjct: 150 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 206 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 207 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 237 >gi|281599669|gb|ADA72653.1| CI protein [Shigella flexneri 2002017] Length = 231 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 15/214 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS + I + Sbjct: 22 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 76 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129 +P F G+ V + S Sbjct: 77 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 136 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 ++ T P + G +++++ V GD + + + K LI Sbjct: 137 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 193 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 194 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 224 >gi|297191630|ref|ZP_06909028.1| LexA repressor [Streptomyces pristinaespiralis ATCC 25486] gi|197719371|gb|EDY63279.1| LexA repressor [Streptomyces pristinaespiralis ATCC 25486] Length = 261 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 53/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 60 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 109 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + P + P + + + +P Sbjct: 110 --RDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 167 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 168 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 219 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 220 TVKRFKR-ENGHVWLLPHNAAYQPI--PGDEATILGKVV 255 >gi|238063472|ref|ZP_04608181.1| lexA family transcriptional repressor [Micromonospora sp. ATCC 39149] gi|237885283|gb|EEP74111.1| lexA family transcriptional repressor [Micromonospora sp. ATCC 39149] Length = 260 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 ++I E I ERH PS + G + P+S + K +G R Sbjct: 59 QRRILEFIRTWVERHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLR---------- 108 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + ++ E + P + P + + +P Sbjct: 109 --RDPNRPRAVDVRSPNETLDDEASRSQRPAPAYVPMLGRIAAGGPILAEQAVEDVFPLP 166 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + + SML GD +++ + GD + G+ Sbjct: 167 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPTADAGDIVAAMLD-GEA 218 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + LM N + D + R++ Sbjct: 219 TVKTYRRR-DGHVWLMPQNPAFDPI--PGDDATIMGRVV 254 >gi|317051151|ref|YP_004112267.1| peptidase S24/S26A/S26B [Desulfurispirillum indicum S5] gi|316946235|gb|ADU65711.1| Peptidase S24/S26A/S26B, conserved region [Desulfurispirillum indicum S5] Length = 218 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 19/228 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M SFS K+WE I R+ T + LA + S + +K+ G W T I Sbjct: 1 MDSFS--KVWERIQRV---TGWKTQAELASALDIRQASVSGAKQRGSMP-LEWIYT--IA 52 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + + D+ ++ +P + S D+ + Sbjct: 53 RKYNTSMDWLLNGEDVSPGFSGENSQQHISLPKYSVVHAQSPEKCDASKLQASH------ 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + + + SM P GDIL+++ Q D + I G+ Sbjct: 107 LTFCQDWLQTMGLDKEALILVEVCGDSMEPTIYAGDILLVDQRFQKVGNDGIYILRLHGE 166 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARILW-ASQ 223 +V K + S+ +MS N Y T+ + + ++W ASQ Sbjct: 167 LVVKRVQRLIDGSLRIMSDNKAYMDQTISAELSEQVCVVGFVVWRASQ 214 >gi|149915248|ref|ZP_01903776.1| putative transcriptional regulator, repressor [Roseobacter sp. AzwK-3b] gi|149810969|gb|EDM70808.1| putative transcriptional regulator, repressor [Roseobacter sp. AzwK-3b] Length = 220 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 8/208 (3%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 ER N++ + +ARKAG+ + KR G+ + S E KI A + +L Sbjct: 14 LERQNVSVAEIARKAGVPYDAVRDIKR----GKVQSTSWERAVKIAQALGIVLEDVLPAT 69 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 + E ++ + D V ++ P A Sbjct: 70 SKTEQVREAASSDLQAMVSVYDVHASAGDGAVVIHEEPIGSLAFPANYLR-QLTQANWRD 128 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISRR-GRSID 194 + SMLP D+++L+ + + D L + G+ + K + + Sbjct: 129 LAIISVKGDSMLPTLADDDVVMLDRSKRDLSYDGLFVIRDNGEALLVKRIQRAPTPGHVI 188 Query: 195 LMSLNCC-YPVDTVEMSDIEWIARILWA 221 ++S N Y ++SD+E I R++WA Sbjct: 189 IISDNRALYDPVEKKLSDMEVIGRVIWA 216 >gi|160875227|ref|YP_001554543.1| putative phage repressor [Shewanella baltica OS195] gi|160860749|gb|ABX49283.1| putative phage repressor [Shewanella baltica OS195] gi|315267420|gb|ADT94273.1| putative phage repressor [Shewanella baltica OS678] Length = 247 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 63/213 (29%), Gaps = 21/213 (9%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + A K G+ + + G P ++ +I +I L Sbjct: 35 SIREFAIKIGVSEGTLRNLIKGG------EPKLDTAIRIAEEAGVSIRWLATGNGPKYPN 88 Query: 83 TEKKEKEIPLLYFPPSGSG------GFFDSGVFPTGNKWNTVG------VPEIRSPHNGI 130 ++ + + + V TG+ +P ++ Sbjct: 89 RQRDDISQEGIVYVHQDQFNEEYFLIEGYDVVVSTGHGAFNDETGVRRRLPFRKNWLKYR 148 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + SM P GD L+++ + + + D+ AK L Sbjct: 149 SLKPENLKVVYAKGNSMEPAIHSGDSLLVDISKTTLEDGCIFVLRLGDDLYAKRLQKLFD 208 Query: 191 RSIDLMSLNCCYPVDTVEMSD---IEWIARILW 220 I+++S N Y V + ++ I +++W Sbjct: 209 GGIEILSDNKEYKSQIVSAGELPMLQIIGKVVW 241 >gi|308235568|ref|ZP_07666305.1| LexA repressor [Gardnerella vaginalis ATCC 14018] gi|311114343|ref|YP_003985564.1| repressor lexA [Gardnerella vaginalis ATCC 14019] gi|310945837|gb|ADP38541.1| repressor lexA [Gardnerella vaginalis ATCC 14019] Length = 239 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 13/219 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +KI +AI E H PS + GL P+S ++ + ++G R S K Sbjct: 23 QRKIMDAIQNCLEEHGFPPSFREIGEAVGLRSPSSVKHQLRALEMKGLIRI----SANKG 78 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 A + + T+ S G G Sbjct: 79 RAIEVIGDFLKKNKEKAHTLITKSAVDVSIYNNDSLIHSHDVPLVGRIAAGTPITAEQHV 138 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + SM+ GD +++ + GD + + Sbjct: 139 EDVMRLPERLTGSGNLFMLEVHGDSMIDAAICDGDYVVVREQNEATNGDIVAALLD-NEA 197 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + LM N Y + S + + +++ Sbjct: 198 TVKTF-RKDNGHVWLMPHNPAYSPI--DGSHAKIMGKVV 233 >gi|163746569|ref|ZP_02153927.1| LexA repressor [Oceanibulbus indolifex HEL-45] gi|161380454|gb|EDQ04865.1| LexA repressor [Oceanibulbus indolifex HEL-45] Length = 231 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 14/229 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLAFIHQRVQRDGVPPSFDEMKLALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ + + D + P+ + G G Sbjct: 61 ARAIEVVKLPESLGGAPGFAPRVIDGDRPDSPPPHSAQPV---TAQHAFDVPVMGRIAAG 117 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + G A Q + + + SM GDI+++ + GD Sbjct: 118 VPIEAISQVSHTVTVPGGMIAGQGEHYALEVRGDSMIEAGINDGDIVVIRETSVADNGDI 177 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + S+ L + N Y + ++ R++ Sbjct: 178 VVALVEDQEATLKRFRRQGA-SVALEAANAAYETRVLPSDKVKVQGRLV 225 >gi|307307842|ref|ZP_07587570.1| putative phage repressor [Shewanella baltica BA175] gi|306910061|gb|EFN40499.1| putative phage repressor [Shewanella baltica BA175] Length = 217 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 12/218 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ I + L +A+ + + + +R PS E + K+ Sbjct: 5 DKLSNRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTN-----PSGELLLKLANVLK 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 LL + +++ L + S + G ++ VP+ Sbjct: 60 VNEGWLLYGDTFKNDKIKDCGEKVTFLRYYQSVNASAGH-GCLNENETYSEYPVPKSVVD 118 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + SM P+ + G IL +N L + ++ K+L Sbjct: 119 KQF---DKDKLFCIECRGDSMEPVLKSGSILAVNPCQTRIDDGGLYVVKLGSELRVKIL- 174 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARILWAS 222 S I L S N Y +TV+ D+ ++ W S Sbjct: 175 SLSNEGITLKSFNKQYLDETVKQGDVRFSVEGKVFWFS 212 >gi|160873045|ref|YP_001557051.1| putative phage repressor [Shewanella baltica OS195] gi|160858567|gb|ABX51791.1| putative phage repressor [Shewanella baltica OS195] Length = 214 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 12/218 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ I + L +A+ + + + +R PS E + K+ Sbjct: 2 DKLSNRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTN-----PSGELLLKLANVLK 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 LL + +++ L + S + G ++ VP+ Sbjct: 57 VNEGWLLYGDTFKNDKIKDCGEKVTFLRYYQSVNASAGH-GCLNENETYSEYPVPKSVVD 115 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + SM P+ + G IL +N L + ++ K+L Sbjct: 116 KQF---DKDKLFCIECRGDSMEPVLKSGSILAVNPCQTRIDDGGLYVVKLGSELRVKIL- 171 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARILWAS 222 S I L S N Y +TV+ D+ ++ W S Sbjct: 172 SLSNEGITLKSFNKQYLDETVKQGDVRFSVEGKVFWFS 209 >gi|91211688|ref|YP_541674.1| repressor protein [Escherichia coli UTI89] gi|117624572|ref|YP_853485.1| putative phage repressor protein [Escherichia coli APEC O1] gi|218559304|ref|YP_002392217.1| Repressor protein CII [Escherichia coli S88] gi|218695990|ref|YP_002403657.1| Repressor protein CII [Escherichia coli 55989] gi|91073262|gb|ABE08143.1| repressor protein [Escherichia coli UTI89] gi|115513696|gb|ABJ01771.1| putative phage repressor protein [Escherichia coli APEC O1] gi|148566149|gb|ABQ88424.1| prophage repressor [Enterobacteria phage CUS-3] gi|218352722|emb|CAU98505.1| Repressor protein CII [Escherichia coli 55989] gi|218366073|emb|CAR03818.1| Repressor protein CII [Escherichia coli S88] gi|294490247|gb|ADE89003.1| repressor protein C2 [Escherichia coli IHE3034] gi|307626074|gb|ADN70378.1| Repressor protein CII [Escherichia coli UM146] gi|312945519|gb|ADR26346.1| Repressor protein CII [Escherichia coli O83:H1 str. NRG 857C] gi|323948802|gb|EGB44701.1| peptidase S24 [Escherichia coli H252] gi|324117735|gb|EGC11634.1| peptidase S24 [Escherichia coli E1167] Length = 216 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 26/219 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALANALKCSP 61 Query: 70 CQLLDLPF----SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L+ + PL+ + +G N S Sbjct: 62 DYLMKGEESLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHK-RAIDNWYDTTVDCS 120 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180 + SM +G I++++ ++ G ++ + Sbjct: 121 E---------DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEA 171 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ GR L LN YP+ + + + I ++ Sbjct: 172 TFKKLVIDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208 >gi|126726370|ref|ZP_01742211.1| LexA repressor [Rhodobacterales bacterium HTCC2150] gi|126704233|gb|EBA03325.1| LexA repressor [Rhodobacterales bacterium HTCC2150] Length = 232 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 66/227 (29%), Gaps = 9/227 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-----ST 55 M + + I++ +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLNFINQRMQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 56 ESIFKILAATNETICQ-LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +I+ ++ E L P + G G+ Sbjct: 61 ARAIEIVKLPGAIDEDAPKGGFKPRVIEGDRPETPPAALDVEPINARDISILGRIAAGDP 120 Query: 115 WNTVGV-PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + P+ + + + + SM+ GDI+++ + GD ++ Sbjct: 121 IEALDHGPQNVAVPGHMMEKGGNHYALEVKGDSMIDAGINNGDIVVIREQNTADNGDIVV 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ + I L + N Y + + + R++ Sbjct: 181 ALIEGETATLKRLMRK-NGMIALEAANPAYETRFLPDNQVAVQGRLV 226 >gi|238790799|ref|ZP_04634557.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] gi|238721114|gb|EEQ12796.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] Length = 234 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 76/236 (32%), Gaps = 31/236 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + +I I R+ + +LT LA+ G+ S K + + P E++ + Sbjct: 15 MKTEMNDRI--RIRRL--QLDLTQVQLAKAIGVSRVSVTKWESGITK-----PDGENLHR 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + T LL + + K K + S G + Sbjct: 66 LAQVLSCTPEWLLYGTGDLRQVDDTKIKPLTAVPNAIPVISSVQAGTWTDTYSAA----- 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNS---AIQVNCG 168 + ++ + + SM P +G +I+ +I+ G Sbjct: 121 --RISDVLRWCTTTVKVSENAFALDVRGESMTNPNGSPSIPEGSTVIVEPNYGSIEDLYG 178 Query: 169 DRLLIKPR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++ + + K L+ LM LN + + + + R++ +Q Sbjct: 179 KIVVAIIDGSSEATIKKLVVDGPNKY-LMPLNPNFRPIEINGN-CRILGRVVQVTQ 232 >gi|239928525|ref|ZP_04685478.1| LexA repressor [Streptomyces ghanaensis ATCC 14672] gi|291436850|ref|ZP_06576240.1| LexA repressor [Streptomyces ghanaensis ATCC 14672] gi|291339745|gb|EFE66701.1| LexA repressor [Streptomyces ghanaensis ATCC 14672] Length = 259 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 57 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 107 -RDPHRPRAYEVRGSDQAAPVQPADTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 218 TVKRFKR-ENGHVWLLPHNAAYEPI--PGDDATILGKVV 253 >gi|288958447|ref|YP_003448788.1| repressor [Azospirillum sp. B510] gi|288910755|dbj|BAI72244.1| repressor [Azospirillum sp. B510] Length = 240 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 58/235 (24%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKS-----KRFGIEGRNRW 52 M + ++ I + ++PS + GL S ++ +R I Sbjct: 1 MLTRKQHELLLFIHERLGQGGVSPSFDEMKDALGLKSKSGIHRLITGLEERGFIRRLPHR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----- 107 + ++ + + P PP+ + + Sbjct: 61 ARALEVLRLPEGLDAARSRAAVKPKFQPNVIRGDFAFASRDAAPPAPAPASANETVQLPL 120 Query: 108 --VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164 G + + SM D +I+ Sbjct: 121 YGRIAAGTPIEALRDNSAFVDIPASMLSTGDHYALEVSGDSMVEAGILDHDTIIIQRCDS 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ G++ K L + G ++ L N Y + +++ Sbjct: 181 AENGTIVVALVDEGEVTLKRLRRK-GNTVALEPANAAYETRIFGADRVRVQGKLV 234 >gi|194099008|ref|YP_002002081.1| putative CI protein [Neisseria gonorrhoeae NCCP11945] gi|304386577|ref|ZP_07368865.1| S24 family peptidase [Neisseria meningitidis ATCC 13091] gi|193934298|gb|ACF30122.1| putative CI protein [Neisseria gonorrhoeae NCCP11945] gi|304339406|gb|EFM05478.1| S24 family peptidase [Neisseria meningitidis ATCC 13091] Length = 232 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 66/230 (28%), Gaps = 23/230 (10%) Query: 11 EAIDRM-AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + A+R N + +R P N+ R +I A Sbjct: 5 DRIKNLIADRFNGNQAEFSRAINKAPAQINQWLNGY-----RNIGDGVAAQIETALGLPR 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPL----------LYFPPSGSGGFFDSGVFPTGNKW-NTV 118 + + K + F+ GN + + + Sbjct: 60 GWVDGKDEPNIPIDSIKSNATVIGTVDAWDSKTPLSDDDCEVPFYKDVCLSAGNGFSDEI 119 Query: 119 G------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + +S SM P++ G L +N+A ++ ++ Sbjct: 120 EDYNGYKLRFSKSTLRRHGISPDDVVCVSADGDSMEPVFPDGATLGINTADKMIKDGKIY 179 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 +G + K+L + + S N Y +T + + I R+ W S Sbjct: 180 AINHSGLLRTKILQKLPDNQVRIKSYNPEYKDETASLDSLTVIGRVFWWS 229 >gi|92118814|ref|YP_578543.1| putative phage repressor [Nitrobacter hamburgensis X14] gi|91801708|gb|ABE64083.1| putative phage repressor [Nitrobacter hamburgensis X14] Length = 240 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 70/237 (29%), Gaps = 22/237 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTESIF 59 M K I I+ E P+ +R AGL P + +R E + + S +++ Sbjct: 1 MDDL--KTIVARIEARLEEMGTNPAAASRAAGLSPGAIRNLQRGAKGEIKLKGASGKTLS 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG--------VFPT 111 + + L+ G+ + + + Sbjct: 59 ALAEYLQVPLDWLMSGSGEPGKPQVIRPAGPERSTVVDAPNAPRLSEFGDFDVEVRGISV 118 Query: 112 GNKWNTVGVPE---IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G + SM+P Y G+ + + A V G Sbjct: 119 GGGDDEFYFNGDVIDHLRRPPGILRAKNVFALNVAGDSMMPRYEPGEPIYVQRANPVI-G 177 Query: 169 DRLLIKPRT------GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++++ G K L+ R GR + LN + +++ I R+L Sbjct: 178 DYVVVELYPEIEGQAGKSFLKKLVRRTGRRVTCSQLNP-PKELEFDTGEVKEIYRVL 233 >gi|327393407|dbj|BAK10829.1| putative transcriptional regulator from phage origin [Pantoea ananatis AJ13355] Length = 230 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 17/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + + LA G+D + ++ + G+ + + +SI KI A Sbjct: 2 NIGNKIRSLRKARGMKIEELAEAVGVDGANISRLE----TGKQKSFTEQSINKIAKALKV 57 Query: 68 T--------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + S ++ + S S G + +++ Sbjct: 58 DVSELFATGTAEPTVYNDSRNVQEQEPNAMYRVEVLDVSASAGPGTYVSGDVIDVIHSIE 117 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + SM GD++ ++ +I GD + + Sbjct: 118 YVSEHAKTIFGGRPASSIKMINVRGDSMAGTIEPGDLVFVDVSIHSVDGDGIYVFGFDEK 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L S + + L S N Y ++ +++ SQ Sbjct: 178 IHIKRLQSVPDKLLVL-SDNPQYKEWHIDRDNEHRFYVFGKVM-ISQ 222 >gi|288934642|ref|YP_003438701.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|288889351|gb|ADC57669.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 220 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 19/214 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +R ++ LA GL + + R PS + I KI+A ++ Sbjct: 10 KDLMKRRGISQETLAEHLGLTKGAVSHWLNA-----RREPSLQDIAKIMAYLGLQGFEVN 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130 + + P +G + G+ V I + Sbjct: 65 KDGSIRDK----SPASNISYHGPNVTTGTYPVLSWVSAGDWMEAVEPYHRRSIERWLDTN 120 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 + SM +G +++++ ++ G ++ + K L Sbjct: 121 VECSDSSFWLDVKGDSMTSPVGLSIPEGMVILVDPEVEPRNGKLVVAKLDNENEATFKKL 180 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G L LN YP+ + + + I ++ Sbjct: 181 VIDAGSKF-LKPLNPQYPMIPINGN-CQIIGVVV 212 >gi|196248582|ref|ZP_03147283.1| transcriptional repressor, LexA family [Geobacillus sp. G11MC16] gi|196212307|gb|EDY07065.1| transcriptional repressor, LexA family [Geobacillus sp. G11MC16] Length = 207 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++I E I + + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQQQILEFIKQEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL + KE+E + P + N Sbjct: 61 TKPRAIEILD------------------SDLTKEREKEEVISVPMIGKVTAGQPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + +P+ + A + Q + SM GD +I+ N GD ++ Sbjct: 103 IEDYFPLPKRLA------AGEEQLFMLEVMGDSMIEAGILDGDYVIVRQQSSANNGDIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N V D + +++ Sbjct: 157 AMTEENEATVKRFFKEKD-HIRLQPENVHLEPIIVR--DCTILGKVI 200 >gi|148358304|ref|YP_001249511.1| phage repressor [Legionella pneumophila str. Corby] gi|296105654|ref|YP_003617354.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99 Alcoy] gi|148280077|gb|ABQ54165.1| phage repressor [Legionella pneumophila str. Corby] gi|295647555|gb|ADG23402.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99 Alcoy] Length = 219 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 12/217 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+I + I + LT L G L T ++ R P E I + A Sbjct: 5 KEIGKRIFEARKEKGLTLKELGELTGGLKQTRLTNWEQGT-----RAPGPEEIKLLAQAL 59 Query: 66 NETI-CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + + T+ IPLL + F + G+ + V + Sbjct: 60 DVSPAFLMCLSDDQQVKRTKSYSHLIPLLDHHQACDAKSFIEAISDQGSAGDVVWISVSA 119 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAK 183 + I + ++ K D SM+P R D+L++ ++ GD ++ + + Sbjct: 120 T---LIQELSSEAFALKMPDESMMPELRLNDVLVVEPSVTPCPGDFVVVKLANKLEAIVC 176 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 +L++LN +P IE I +I+ Sbjct: 177 QYRETTYTEFELVTLNDNWPNIKNTKEFRIEIIGKII 213 >gi|329889326|ref|ZP_08267669.1| lexA repressor [Brevundimonas diminuta ATCC 11568] gi|328844627|gb|EGF94191.1| lexA repressor [Brevundimonas diminuta ATCC 11568] Length = 234 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 63/228 (27%), Gaps = 10/228 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I ++PS K LD S + R R Sbjct: 1 MLTKKQHELLMFIHERIRETGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------TG 112 + L P + + L P+ + D P G Sbjct: 61 ARALEVVKLPEQATTAAPAKGRAPFKPDVIQGGGLNPRPAVAEAANDVRDLPLLGKIAAG 120 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171 + R P + + + SM GD +I+ + G+ + Sbjct: 121 TPIAAIQHERERLPVPEAMLGAGEHYLLEIEGDSMIEAGILDGDTVIIKRVENASSGEIV 180 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K L ++G+SI L N Y +E +++ Sbjct: 181 VALVEGEEATLKRL-RKKGQSIALEPANSAYETRIFGPDQVEVQGKLV 227 >gi|317050991|ref|YP_004112107.1| CI repressor [Desulfurispirillum indicum S5] gi|316946075|gb|ADU65551.1| CI repressor [Desulfurispirillum indicum S5] Length = 224 Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 76/221 (34%), Gaps = 19/221 (8%) Query: 10 WEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 W I ++ L+ + LA G++P S + +K+ G + E + KI + Sbjct: 8 WSRIQQL---TGLSTQAELADALGINPASVSGAKKRG------FFPLEWMLKIALDYQVS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ + + S + + + + + SPH+ Sbjct: 59 MDALIGISEHGQMVGVSAFQAKTAAILSGKPSREENELLYEYEHSPIDDRTLETVVSPHS 118 Query: 129 GIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 +Q + SM P RKGD+++++ + + + + +++ Sbjct: 119 KDQLLQAIGFSTETMAIVRAHCDSMEPTIRKGDLMVVDRSCTAIETNGIYVFQAKQNLII 178 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILW 220 K + + S N YP + V + + ++W Sbjct: 179 KRVELLLNGFLRFFSDNPAYPSERVHPEQLSAEDIFGLVVW 219 >gi|331648293|ref|ZP_08349382.1| transciptional regulator [Escherichia coli M605] gi|331042842|gb|EGI14983.1| transciptional regulator [Escherichia coli M605] Length = 230 Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 24/232 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I +LT LA++ GL + ++ + P+ +++ + A N + Sbjct: 2 INDRIREARRNVHLTQDALAKRIGLTKATISQWESGNTT-----PNGKNLINLAEALNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-------TVGVP 121 LL SD + + S + D P + V + Sbjct: 57 PEWLLSGKTSDTKEIHSNAQVEGGFSVWDSSTPLEDDEVEIPFYQEIELSAGNGTYVDID 116 Query: 122 EIRSPHNGIYAIQTQ-------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + + SM P+ G ++ ++++ ++ Sbjct: 117 RMGCKLRFARSTLRKAGVDVNCAACVSIHGNSMEPVLPDGAVVGIDTSKTGVKDGQMYAI 176 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV---EMSDIEWIARILWAS 222 + G + K+L + + S N Y + E + I I ++ W S Sbjct: 177 DQDGLLRVKLLYRLPSG-LRIRSFNRDEYADEEYFNQEANKIRIIGQVFWYS 227 >gi|258654104|ref|YP_003203260.1| SOS-response transcriptional repressor, LexA [Nakamurella multipartita DSM 44233] gi|258557329|gb|ACV80271.1| SOS-response transcriptional repressor, LexA [Nakamurella multipartita DSM 44233] Length = 252 Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 62/221 (28%), Gaps = 25/221 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 T HK I + I ER PS + AGL S + +E R Sbjct: 48 TMRQHK-ILQVIRDSVERRGYPPSVREIGDAAGLKSPSSVAHQLKVLEKRG--------- 97 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +L + P D + +P + P + + Sbjct: 98 -LLRRDPNRPRAVDIRPLDDAMPDTEATHPLPSPSYVPVVGRIAAGGPILAEQAIEDVFP 156 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P+ + K SM+ GD +++ + GD + G Sbjct: 157 LPKEIVG-------EGTLFLLKVVGDSMIDAAITDGDWVVVRQQPVADNGDIVAAMID-G 208 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + LM N Y + + R++ Sbjct: 209 EATVKTFKRK-DGHVWLMPHNAAYEPI--PGDEAVVLGRVV 246 >gi|188025838|ref|ZP_02959981.2| hypothetical protein PROSTU_01881 [Providencia stuartii ATCC 25827] gi|188020664|gb|EDU58704.1| hypothetical protein PROSTU_01881 [Providencia stuartii ATCC 25827] Length = 250 Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 64/225 (28%), Gaps = 20/225 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA-ATNETI 69 + ++ + T LA+ G+ +S N+ R T I K+L Sbjct: 23 DRLNIAMQNAGYTQGALAKAVGMAQSSINQLLNKASGSR----KTVEIAKVLGVRAEWLA 78 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR----S 125 + S+ + + + G P+I Sbjct: 79 SGEGSMLPSEQYSVKHLTDSNENELATNDSYTVDLMDIEYSCGPGSYNSDFPDIIRSISL 138 Query: 126 PHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 +I Q SM D++ ++ ++ GD + G Sbjct: 139 EPEFALSIFGGRPASSMKAINAQGDSMQGTIDPEDLVFIDITVKRFEGDGVYAFTFGGSS 198 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI---ARIL--W 220 K L + I L S N Y ++ S+ E + +++ W Sbjct: 199 HIKRLQKIKNHLIVL-SDNPAYKEWKIDESEEEQLFIDGKVIVSW 242 >gi|153000378|ref|YP_001366059.1| putative prophage repressor [Shewanella baltica OS185] gi|160876505|ref|YP_001555821.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|151364996|gb|ABS07996.1| putative prophage repressor [Shewanella baltica OS185] gi|160862027|gb|ABX50561.1| transcriptional regulator, XRE family [Shewanella baltica OS195] Length = 221 Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 33/223 (14%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +T S LA K G+ + G R PS E I ++ L Sbjct: 9 VKTRMKEAGVTQSMLAEKMGMSQGAIAHWL-----GGKRKPSIEDIASMMNIVGIRHMTL 63 Query: 73 LDLPFSDGRTT-----------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 D + P++ + +G+ P Sbjct: 64 GADGLIDYPDSVLGNTEELPAKISYVNSFPVISYVQAGAWTEAVESC-PASALDEWQDTT 122 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPR 176 E S + Q SM + +G ++++++ G ++ Sbjct: 123 ERTSE---------NCFWLRVQGDSMTTPAGISFPEGTLILIDAEKDYQNGSFVVAKLTD 173 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L+ G+ L LN YP + + + I ++ Sbjct: 174 INEATFKKLVIDAGQKF-LRPLNTAYPTLPINGN-CKIIGVVV 214 >gi|15832244|ref|NP_311017.1| prophage repressor CI [Escherichia coli O157:H7 str. Sakai] gi|168764190|ref|ZP_02789197.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|11875129|dbj|BAB19608.1| CI protein [Enterobacteria phage VT1-Sakai] gi|13362459|dbj|BAB36413.1| putative prophage repressor CI [Escherichia coli O157:H7 str. Sakai] gi|189365770|gb|EDU84186.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|326343910|gb|EGD67671.1| Putative prophage repressor CI [Escherichia coli O157:H7 str. 1044] Length = 212 Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 27/221 (12%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ I E I + E L+ + LA+ G S + E R S + + AA Sbjct: 2 HEIIGERIKSLREAKGLSQAQLAKLCGWAAPS----RLGNYELGTRKVSADDALVLGAAL 57 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +++ ++ ++ F +G F + G + + V S Sbjct: 58 GVSPAKIMFGED-----SDAVFRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPTTTKAS 112 Query: 126 PHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG- 178 + + + SM P + +G +++++ A V GD + Sbjct: 113 E---------KAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVASANGDS 163 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K G S L+ LN Y + S I +++ Sbjct: 164 EATFKKYEKDAGVSY-LVPLNPAYRTLDCDHS-CRIIGKVV 202 >gi|257467069|ref|ZP_05631380.1| LexA repressor [Fusobacterium gonidiaformans ATCC 25563] gi|315918203|ref|ZP_07914443.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563] gi|313692078|gb|EFS28913.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563] Length = 252 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 7/212 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI--FKILAATNE 67 + I R LT L K G+ + + + T + + Sbjct: 5 GDIIRAFRAREGLTGQELGDKIGVSQAFIHLMESDKRRVPQKTMETLKLMLSREDYLDIL 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + P ++ + G P Sbjct: 65 KYEEYATTPDFIKNELKRISNFSKEDIISEFEMREYPIYDSVSAGFGIIPDAAPIEYISL 124 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLI 186 ++ + SM P GDI+++ I+V G+ + + TG+ K L Sbjct: 125 P---ILRGEIVGIYVVGNSMEPSISDGDIILVKKDIEVQVGEIGVFVNQVTGEGFVKRLK 181 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L S N Y ++ DI ++ Sbjct: 182 YK-NGCYILKSDNPMYTDVEIQSDDIICCGKV 212 >gi|94496455|ref|ZP_01303032.1| SOS-response transcriptional repressor [Sphingomonas sp. SKA58] gi|94424201|gb|EAT09225.1| SOS-response transcriptional repressor [Sphingomonas sp. SKA58] Length = 223 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 43/220 (19%), Gaps = 9/220 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + +++ I E ++PS K LD S + R R + Sbjct: 1 MLTPKQQELLSFIHDRLEEGGVSPSFEEMKDALDLRSKSGIHRLINALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + + P Sbjct: 61 ARALEVLKLPDAMHRAPVPPVALAAKAAAPIPIAANDVLEIPLHGRIAAGVPIEAMEGQ- 119 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + SM GD ++ G ++ Sbjct: 120 ----AMLSVPAALLGSGDHYALEVSGDSMVEAGILDGDFALIQRTDVAREGQIVVALIDD 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K + L N Y + + + Sbjct: 176 NEATLKYFRRDGA-RVRLDPANPAYEPQVYDPRQVRIQGK 214 >gi|16078848|ref|NP_389668.1| LexA repressor [Bacillus subtilis subsp. subtilis str. 168] gi|221309672|ref|ZP_03591519.1| LexA repressor [Bacillus subtilis subsp. subtilis str. 168] gi|221313994|ref|ZP_03595799.1| LexA repressor [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318916|ref|ZP_03600210.1| LexA repressor [Bacillus subtilis subsp. subtilis str. JH642] gi|221323190|ref|ZP_03604484.1| LexA repressor [Bacillus subtilis subsp. subtilis str. SMY] gi|321311427|ref|YP_004203714.1| LexA repressor [Bacillus subtilis BSn5] gi|399378|sp|P31080|LEXA_BACSU RecName: Full=LexA repressor; AltName: Full=SOS regulatory protein dinR gi|289288|gb|AAA22573.1| lexA [Bacillus subtilis] gi|2634169|emb|CAB13669.1| transcriptional repressor of the SOS regulon [Bacillus subtilis subsp. subtilis str. 168] gi|291484394|dbj|BAI85469.1| LexA repressor [Bacillus subtilis subsp. natto BEST195] gi|320017701|gb|ADV92687.1| LexA repressor [Bacillus subtilis BSn5] Length = 205 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 37/227 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++ I I + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL + + + P S + N Sbjct: 61 TKPRAIEILDE--------------------EVDIPQSQVVNVPVIGKVTAGSPITAVEN 100 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +P+ P + SM+ D +I+ N G+ ++ Sbjct: 101 IEEYFPLPDRMVPP------DEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVV 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ + + +++ Sbjct: 155 AMTEDDEATVKRFYK-EDTHIRLQPENPTMEPIILQN--VSILGKVI 198 >gi|295399936|ref|ZP_06809917.1| transcriptional repressor, LexA family [Geobacillus thermoglucosidasius C56-YS93] gi|294978339|gb|EFG53936.1| transcriptional repressor, LexA family [Geobacillus thermoglucosidasius C56-YS93] Length = 207 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++I + I + + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQQQILDFIKKEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL E + P + N Sbjct: 61 TKPRAIEILD------------------ADFSARNETDDVISVPIIGKVTAGQPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + +P + + + + SM GD +I+ + GD ++ Sbjct: 103 IEDYFPLP------KRLISSEDHVFMLEVMGDSMIEAGILDGDYVIVRQQQSADNGDIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N V D + +++ Sbjct: 157 AMTEENEATVKRFFKEKD-HIRLQPENSSLEPIIVR--DCTILGKVI 200 >gi|307329249|ref|ZP_07608414.1| transcriptional repressor, LexA family [Streptomyces violaceusniger Tu 4113] gi|306885148|gb|EFN16169.1| transcriptional repressor, LexA family [Streptomyces violaceusniger Tu 4113] Length = 267 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 52/219 (23%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 66 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 115 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 P + P + + + +P Sbjct: 116 --RDPHRPRAYEVRGSDQPSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 173 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 174 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 225 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 226 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 261 >gi|290956952|ref|YP_003488134.1| SOS repressor LexA [Streptomyces scabiei 87.22] gi|260646478|emb|CBG69575.1| SOS repressor LexA [Streptomyces scabiei 87.22] Length = 258 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 52/219 (23%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 57 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 P + P + + + +P Sbjct: 107 --RDPHRPRAYEVRGSDQASAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 164 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 165 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 216 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 217 TVKRFKR-EDGHVWLLPHNAAYEPI--PGDDATILGKVV 252 >gi|326791322|ref|YP_004309143.1| SOS-response transcriptional repressor, LexA [Clostridium lentocellum DSM 5427] gi|326542086|gb|ADZ83945.1| SOS-response transcriptional repressor, LexA [Clostridium lentocellum DSM 5427] Length = 203 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 63/221 (28%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I I + + PS L GL TS S +E + R PS Sbjct: 8 KQQQILSCIKQNLKEKGYPPSVRELCIAVGLSSTSTVHSHLNTLEKKGFIKRDPSKPRTI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + P + + N Sbjct: 68 EILDEEMNWLEDH--------------------VSAVPIVGKVTAGAPILAVENIEEYFP 107 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P+ + H + + TSM+ GD +I+ G+ ++ Sbjct: 108 LPKHLTRHE-------ETFMLNVKGTSMINAGILDGDQIIVRHQDSARNGEIVVALI-ED 159 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K + L N + D++ + +++ Sbjct: 160 EVTVKRFFKEKD-CFRLQPENDTMDPIYCQ--DVKILGKVI 197 >gi|119718039|ref|YP_925004.1| LexA repressor [Nocardioides sp. JS614] gi|171704656|sp|A1SND2|LEXA_NOCSJ RecName: Full=LexA repressor gi|119538700|gb|ABL83317.1| SOS-response transcriptional repressor, LexA [Nocardioides sp. JS614] Length = 246 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 59/219 (26%), Gaps = 17/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 +++ I E+ PS + GL +S ++ K +G R P + Sbjct: 32 QQRVLAHIKDSIEKRGYPPSMREIGEAVGLTSSSSVAHQLKTLEEKGFLKRDPHRPRALE 91 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + +P + P + + + Sbjct: 92 VFLPEVMAARRSMSAAEESSFDETGVGDALPAAQYVPVVGRIAAGGPILAEERVEDVFPL 151 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P Q + + SM GD + + G+ + G+ Sbjct: 152 PRQLVG-------DGQLFLLEVRGDSMIEAAICDGDYVAIRQQPTAENGEIVAAMID-GE 203 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + G + L+ N Y + + + ++ Sbjct: 204 ATVKTFQRKDGN-VWLLPHNPAYDPI--DGTHATILGKV 239 >gi|254492240|ref|ZP_05105414.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|224462565|gb|EEF78840.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] Length = 209 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 12/135 (8%) Query: 99 GSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIY----AIQTQDTRHKTQDTSMLPLY 151 + GN + + IY + + SM P Sbjct: 71 FAHIPLFDVKASAGNGYVIHEEEETDALIFKKEWIYNELHSSPANLYLIYVEGESMEPAL 130 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS- 210 R GD+++++ V D + + ++ K L + + + S N Y + + Sbjct: 131 RPGDVILVDHTDNVAKRDGIYVIRMGESLLVKRLQRLPSQRLKVTSDNPAYEPFEISLDF 190 Query: 211 ----DIEWIARILWA 221 ++ I R++W+ Sbjct: 191 DLQNELSIIGRVVWS 205 >gi|157737469|ref|YP_001490152.1| S24 family peptidase [Arcobacter butzleri RM4018] gi|157699323|gb|ABV67483.1| peptidase, S24 family [Arcobacter butzleri RM4018] Length = 218 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 14/221 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 F +I E + + +A+ L +F K G +I Sbjct: 1 MFIVDEIIEKLKDIISADGKNGKVFDKDVAKSLELSQANFATMKNRGKIPFT------NI 54 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 A +I LL D + I +GG + + + ++ Sbjct: 55 LNFCAKKKISINWLLYNQNPDSLIDATDKYWIKYYPSVSVSAGGGAYE----SEDNFESL 110 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P G SM P +I+ ++ D + Sbjct: 111 ELPRYFVNMLGGNENLKNIDAINVIGDSMEPTLNSDNIIFIDKTKNDVSRDGIYAFTTIH 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + R +D++S N YP + +D+E + +++ Sbjct: 171 GLFVKRIQRRVDGKLDIISDNKDYPSQVLNKNDLEILGKVI 211 >gi|27379937|ref|NP_771466.1| LexA repressor [Bradyrhizobium japonicum USDA 110] gi|44888103|sp|Q89KS7|LEXA_BRAJA RecName: Full=LexA repressor gi|27353090|dbj|BAC50091.1| LexA repressor [Bradyrhizobium japonicum USDA 110] Length = 231 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 8/226 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQYELLRFISERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS----GGFFDSGVFPTGNK 114 + + Q + + + + G G Sbjct: 61 ARAIEVIKLPELQAAAGNRRGFTPSVIEGNLGKVRASSSADEGERPVAVPVMGRIAAGTP 120 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + + + + SM GD+ ++ + GD ++ Sbjct: 121 IEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVEAGILDGDMALIQRNESADTGDIVVA 180 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R SI L N Y V + + ++ +++ Sbjct: 181 LIDDEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVKIQGKLI 225 >gi|85716978|ref|ZP_01047941.1| LexA repressor [Nitrobacter sp. Nb-311A] gi|85696180|gb|EAQ34075.1| LexA repressor [Nitrobacter sp. Nb-311A] Length = 233 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 59/228 (25%), Gaps = 10/228 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + ++ I+ + + PS + L + ++ +R I Sbjct: 1 MLTRKQYELLRFINERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ + P K + G G Sbjct: 61 ARAIEVIKLPELAASGGGRRGFTPSVIEGNLGKVRRNSGGSVEDGERPVAVPVMGRIAAG 120 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171 + + + + SM GD+ ++ + GD + Sbjct: 121 TPIEALQTCSHTISLPPDMLGTGEHYALEVRGDSMVEAGILDGDLALIQRNQTADTGDIV 180 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K R SI L N Y V + + ++ R++ Sbjct: 181 VALIDDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVQIQGRLI 227 >gi|330829454|ref|YP_004392406.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas veronii B565] gi|328804590|gb|AEB49789.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas veronii B565] Length = 248 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 20/230 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S + +D + L+ A G+ + K N P+ + + Sbjct: 25 MDTLS-----DRLDELRGS--LSYKAFAELVGMSESGMRKYF----PPFNSLPTIDKALR 73 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVG 119 I N + L ++ + + G+ + G + Sbjct: 74 IARTFNVNLEWLATGQGPKHPDGTAEQMVQREEFDEEYALIDGYHVTVSTGHGAFNDDHE 133 Query: 120 VPEIRSPHNGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 V + + SM P GD ++++ + + + Sbjct: 134 VKRKLAFRRKWLTFRKLNPDNLVVVFAKGDSMEPTIHSGDSILVDISKNQIEDGSIFVLR 193 Query: 176 RTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIE---WIARILWA 221 ++ AK L I ++S N YP+ V + +E I +++WA Sbjct: 194 LGEELYAKRLQKNFDGGITIISDNRDDYPLQVVPANQLENLAVIGKVVWA 243 >gi|300784298|ref|YP_003764589.1| LexA family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793812|gb|ADJ44187.1| LexA family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 241 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 63/219 (28%), Gaps = 25/219 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNRWPSTESIFKI 61 +++ + I R PS + GL TS ++ + +G R Sbjct: 37 QQQVLDVIRSWVSRFGYPPSVREIGEAVGLTSTSSVSHQLRALQRKGYLRR--------- 87 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 A + L + ++ +P + P V + +P Sbjct: 88 DANRPRAVGVLSATDDNPMGIEMDQQPVMPKAAYVPLVGRIAAGGPVLAEQAIEDVFPLP 147 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + K SM+ GD +++ + G+ + G+ Sbjct: 148 REIVG-------EGELFLLKVTGDSMIDAAITDGDWVVVRQQPDADNGEIVAAMID-GEA 199 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + G I LM N Y D + +++ Sbjct: 200 TVKTFKRK-GGHIWLMPHNEAYEPI--PGDDATVLGKVV 235 >gi|294815512|ref|ZP_06774155.1| LexA repressor [Streptomyces clavuligerus ATCC 27064] gi|326443863|ref|ZP_08218597.1| LexA repressor [Streptomyces clavuligerus ATCC 27064] gi|3402269|emb|CAA12169.1| LexA protein [Streptomyces clavuligerus] gi|294328111|gb|EFG09754.1| LexA repressor [Streptomyces clavuligerus ATCC 27064] Length = 264 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 52/219 (23%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 63 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 112 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 P + P + + + +P Sbjct: 113 --RDPHRPRAYEVRGSDQPSAQPADTSGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 170 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 171 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 222 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 223 TVKRFKR-ENGHVWLLPHNAAYQPI--PGDDATILGKVV 258 >gi|256784772|ref|ZP_05523203.1| LexA repressor [Streptomyces lividans TK24] gi|289768659|ref|ZP_06528037.1| LexA repressor [Streptomyces lividans TK24] gi|68449792|emb|CAJ01780.1| SOS regulatory protein LexA [Streptomyces coelicolor A3(2)] gi|289698858|gb|EFD66287.1| LexA repressor [Streptomyces lividans TK24] Length = 259 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 57 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 107 -RDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 218 TVKRFKR-EDGHVWLLPHNSAYEPI--PGDDATILGKVV 253 >gi|86749926|ref|YP_486422.1| LexA repressor [Rhodopseudomonas palustris HaA2] gi|123292537|sp|Q2IW99|LEXA_RHOP2 RecName: Full=LexA repressor gi|86572954|gb|ABD07511.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas palustris HaA2] Length = 234 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 11/229 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + ++ + I+ + + PS + L + ++ +R I Sbjct: 1 MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + K+ + + P + + + G Sbjct: 61 ARAIEVIKLPDLGGNSGARRGFTPSVIEGNLGKVRPPSPQHAEDDSDRNVAVPVMGRIAA 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 G + + + + SM+ GD+ ++ + GD Sbjct: 121 GTPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMMDAGILDGDMALIQRNESADTGDI 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R SI L N Y V + + + +++ Sbjct: 181 VVALIDEEEATLKRFRRRGA-SIALEPANSAYEVRILPPNRVRIQGKLI 228 >gi|297202845|ref|ZP_06920242.1| LexA repressor [Streptomyces sviceus ATCC 29083] gi|197717329|gb|EDY61363.1| LexA repressor [Streptomyces sviceus ATCC 29083] Length = 259 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 57 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 107 -RDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIV-AAMLEGEA 217 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 218 TVKRFKR-EDGHVWLLPHNSAYEPI--PGDDATILGKVV 253 >gi|29829005|ref|NP_823639.1| LexA repressor [Streptomyces avermitilis MA-4680] gi|29606111|dbj|BAC70174.1| putative SOS regulatory protein LexA [Streptomyces avermitilis MA-4680] Length = 259 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 57 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 107 -RDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 218 TVKRFKR-EDGHVWLLPHNSAYQPI--PGDEATILGKVV 253 >gi|296534190|ref|ZP_06896677.1| prophage MuMc02 [Roseomonas cervicalis ATCC 49957] gi|296265462|gb|EFH11600.1| prophage MuMc02 [Roseomonas cervicalis ATCC 49957] Length = 266 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 63/226 (27%), Gaps = 14/226 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE-----SIFKILA 63 I E + E L +A KAG+ + R G S+ +L Sbjct: 36 IIERLKAAIEASGLKAPEVAEKAGIPLKTLANYMRGGGMKVLGAVRLAQACGVSVEWLLT 95 Query: 64 ATNETICQLL-DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT----V 118 I + + E + + Sbjct: 96 GVGPGIGTPTGATSEPCQISKHHPKNEHDFPDLIRLPRYDVRAAAGDGAEVVSEHVAEFI 155 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + SM P GD LI+++ + D + + Sbjct: 156 AFSESWIK-QTLRRKPDGLAIIEAVGNSMSPTINDGDTLIIDTKVVEANSDGIYVLSVRN 214 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 ++ K + + I ++S N + ++ SD + + ++LWA Sbjct: 215 GLMVKRIQLQIDGDILVISDNPSFEPKRIQASDFDAMRIVGQVLWA 260 >gi|126461478|ref|YP_001042592.1| LexA repressor [Rhodobacter sphaeroides ATCC 17029] gi|171855217|sp|A3PHK4|LEXA_RHOS1 RecName: Full=LexA repressor gi|126103142|gb|ABN75820.1| SOS-response transcriptional repressor, LexA [Rhodobacter sphaeroides ATCC 17029] Length = 227 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 5/221 (2%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESIFK 60 + ++ + I +R + PS K LD S + R R + Sbjct: 2 TRKQMELLDFIKTRMDRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHRAR 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-G 119 + + + +G+ G G + G Sbjct: 62 AIEIVKLPEAMERAGFSARAAKAAAAPLPKGAVTVETAGALDLPLMGRIAAGLPIEAING 121 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 P+ + + + + Q + + SM+ GDI+++ + GD ++ Sbjct: 122 GPQSVTVPGMMLSGRGQHYALEVKGDSMIAAGINDGDIVVIREQQTADNGDIVVALVADH 181 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R G I L N Y ++ R++ Sbjct: 182 EATLKRYRRR-GGMIALEPANDSYETQVYPEQMVKVQGRLV 221 >gi|163742788|ref|ZP_02150173.1| LexA repressor [Phaeobacter gallaeciensis 2.10] gi|161384043|gb|EDQ08427.1| LexA repressor [Phaeobacter gallaeciensis 2.10] Length = 224 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 9/223 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I+ ++ + PS K LD S + R R I + Sbjct: 1 MLTKKQLDLLDFINTRLQQDGVPPSFDEMKVALDLRSKSGIHRLITALEERGF----IRR 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--SGGFFDSGVFPTGNKWNTV 118 + L + P+ + G G + Sbjct: 57 LAHRARAIEIIRLPDSLGNTAEAAPAAPGPANEVSAPAMIAAMELPVMGRIAAGVPIEAI 116 Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + Q Q + + SM GDI+++ + GD ++ Sbjct: 117 NQVSHQVAVPASMLSAQGQHFALEVRGDSMIEAGINDGDIVVIRETAVADNGDVVVALVE 176 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + G +I L + N Y ++ R++ Sbjct: 177 GQEATLKRIYRK-GSTIALEAANPAYETRRYRQDQVKVQGRLV 218 >gi|296129413|ref|YP_003636663.1| transcriptional repressor, LexA family [Cellulomonas flavigena DSM 20109] gi|296021228|gb|ADG74464.1| transcriptional repressor, LexA family [Cellulomonas flavigena DSM 20109] Length = 252 Score = 98.3 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 19/219 (8%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFKIL- 62 + E + E+ PS + GL S K + +E + R P +++ Sbjct: 39 VLETVRASVEQRGYPPSMREIGDAVGLTSPSSVKHQLTALERKGYLRRDPHRPRAIEVVQ 98 Query: 63 -AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + P + P + + +P Sbjct: 99 PDDARTVAPWTSRPDGPAVDPDTPERDGAPAPSYVPVVGRIAAGGPILAEQVVEDVFPLP 158 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + K SM GD +++ G+ + G+ Sbjct: 159 RQLVG-------EGELFLLKVAGDSMIEAAICDGDWVVVRRQPVAENGEIVAAMID-GEA 210 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L + L+ N Y + +D + R++ Sbjct: 211 TVKTLKRV-DGRVWLLPHNPAYTPI--DGTDATVLGRVV 246 >gi|91977309|ref|YP_569968.1| LexA repressor [Rhodopseudomonas palustris BisB5] gi|123735363|sp|Q136C2|LEXA_RHOPS RecName: Full=LexA repressor gi|91683765|gb|ABE40067.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas palustris BisB5] Length = 235 Score = 98.3 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 60/230 (26%), Gaps = 12/230 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + ++ + I+ + + PS + L + ++ +R I Sbjct: 1 MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV--FP 110 + K+ T S T K + + + Sbjct: 61 ARAIEVIKLPDLGGNTGGGRRGFTPSVIEGTLGKVRPPSHSHAEDESDRNVAVPVMGRIA 120 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169 G + + + + SM GD+ ++ GD Sbjct: 121 AGTPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVEAGILDGDMALIQRNESAETGD 180 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R SI L N Y V + + + +++ Sbjct: 181 IVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 229 >gi|319648635|ref|ZP_08002847.1| transcriptional regulator [Bacillus sp. BT1B_CT2] gi|317389283|gb|EFV70098.1| transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 210 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 22/220 (10%) Query: 7 KKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+I + + +R ++ + +AR + + + + R + I + Sbjct: 8 KEIMANNLKKQLKRKGISQTMMARDLNIPEMTVSNWVKGKTYPRP-----DKIQLMADYF 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 T QL + S+ + IP+L + N + + Sbjct: 63 GITRTQLTEEAPSNLTPLAPQTIPIPVL------GTIACGEPILAEENVTEYMYESPDQL 116 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKV 184 P K + TSM P G +++ +V G ++ + K Sbjct: 117 PS-------GNLFYLKAKGTSMEPTIPDGSYVLVREQPEVENGAIAAVLVNGDTEATLKR 169 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILWASQ 223 + + G + LM N Y + + I + + +Q Sbjct: 170 IKRQ-GDMVILMPDNPNYSPFIITPDNPARVIGQAIQFTQ 208 >gi|302557999|ref|ZP_07310341.1| LexA repressor [Streptomyces griseoflavus Tu4000] gi|302475617|gb|EFL38710.1| LexA repressor [Streptomyces griseoflavus Tu4000] Length = 259 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 57 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 107 -RDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 218 TVKRFKR-EDGHVWLLPHNAAYEPI--PGDDATILGKVV 253 >gi|302554607|ref|ZP_07306949.1| LexA repressor [Streptomyces viridochromogenes DSM 40736] gi|302472225|gb|EFL35318.1| LexA repressor [Streptomyces viridochromogenes DSM 40736] Length = 259 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 57 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 107 -RDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 218 TVKRFKR-EDGHVWLLPHNAAYEPI--PGDDATILGKVV 253 >gi|323137198|ref|ZP_08072277.1| transcriptional repressor, LexA family [Methylocystis sp. ATCC 49242] gi|322397556|gb|EFY00079.1| transcriptional repressor, LexA family [Methylocystis sp. ATCC 49242] Length = 237 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 54/232 (23%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + + I + + PS K LD S + R + R + Sbjct: 1 MLTKKQSDLLRFIHERLKESGVPPSFDEMKDALDLRSKSGIHRLILALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP----------SGSGGFFDSGV 108 + L L + G Sbjct: 61 ARALEVLRLPESATPRGGGGSRGGKFSPAVIEGNLGRVRPLHERREEETGQNVAIPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G + + + + + SM GD +++ + Sbjct: 121 IAAGTPISAIQSRSHTISLPPDLLTSGEHYALEVRGDSMIEAGILDGDTVVIKKQDNADT 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K L R SI L + N Y + +++ Sbjct: 181 GDIVVALIDDEEATLKRLRKRGA-SIALEAANPAYETRIFGPDRVRIQGKLV 231 >gi|330888348|gb|EGH21009.1| peptidase [Pseudomonas syringae pv. mori str. 301020] Length = 233 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 19/219 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + + LT + LA ++G+ S ++ +R ++ + K Sbjct: 22 ELKDRLKQARKHARLTQAELAERSGIKQASVSEIERGLTR------TSGYLVKFATICRV 75 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L + S + + G V Sbjct: 76 DPVWLSEGVGSMISIGAPSNVAMIDQPVA---MYRYPVVSTVAAGAWAEAVEPDFSDRYE 132 Query: 128 NGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182 Y + + + SM +G +++++ ++ G ++ P + + Sbjct: 133 TSDYKAKGRAFWLEVSGDSMTAPSGMSVPEGMLILVDPGVEARPGKLVVAKLPSSNEATF 192 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218 K LI + L LN Y + D + I R+ Sbjct: 193 KKLI-DDAGQLYLKPLNPGYSMIKCT-DDCKIIGVAVRV 229 >gi|325288497|ref|YP_004264678.1| phage repressor like transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324963898|gb|ADY54677.1| phage repressor like transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 201 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 68/209 (32%), Gaps = 26/209 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + LT L G+ + NK + +E R +I K+ A + QL Sbjct: 7 IKQLRLKKGLTQEELGNLIGVKRAAVNKWETGSVENLKRS----TIEKLSAIFGVSPIQL 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L + + +L P +GV PE Sbjct: 63 L---------GLTEAEPRDVLVSLPIVGRISCGNGVLAYEEIEGYEPTPETWLNG----- 108 Query: 133 IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + + + SM + GD+L++ V+ G+ + V K + G Sbjct: 109 --GEYFYLRAKGDSMKNARIQDGDLLLIRQQPDVDDGEIAAVLIN-DQAVLKKVYK-TGD 164 Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIAR 217 ++ L S N YP + + + I + Sbjct: 165 TLVLQSENPDYPPIVCDGKEDYSVRIIGK 193 >gi|167034439|ref|YP_001669670.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860927|gb|ABY99334.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 228 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 15/207 (7%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 +T + LAR G+ S N G+ + +++ T L + + Sbjct: 18 ITQASLARACGITAPSVNDWL----SGKTKTIEGQNLLLAAEHLGVTPKWLATGRGAMKK 73 Query: 82 TTEKKEKEIPLLYFPPS-GSGGFFDSGVFPTGNKWNTVGV--PEIRSPHNGIYAIQTQDT 138 + + + + S + + G V + + H Sbjct: 74 SPSGEVESSNVEAALQPTRSFSYPEISWVQAGIAREAVEMGNIALCPQHTSDVWAGEDAF 133 Query: 139 RHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRS 192 + SM P + +G ++++ I+ G ++ + T + K L+ Sbjct: 134 WLRVIGDSMTLSSGSPSFPEGFLILIAPDIEPRPGQFVVARMTSTNEATFKQLVRD-AGE 192 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L LN YP V+ E + ++ Sbjct: 193 LYLKPLNSAYPTRAVD-DAWEIVGTVV 218 >gi|323967257|gb|EGB62681.1| peptidase S24 [Escherichia coli M863] Length = 217 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 58/214 (27%), Gaps = 15/214 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R R PS + I + Sbjct: 8 RSRMKELGITQEKLAEELGMTQGGIGHWLRGY-----RHPSLDEIGVVFKYLGIDNVSFN 62 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129 +P F G+ V + S Sbjct: 63 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 122 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 ++ T P + G +++++ V GD + + + K LI Sbjct: 123 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 179 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 180 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 210 >gi|258454473|ref|ZP_05702440.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937] gi|257863330|gb|EEV86091.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937] Length = 238 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 31/236 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K L + Sbjct: 6 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63 Query: 71 QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGGFFDSGVFP------------ 110 + ++ +L + + + Sbjct: 64 GFDISKNRKVENNDITSIYSKLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSE 123 Query: 111 ------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 E S + D K SM PL++ G I+ + + Sbjct: 124 VDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNGQIIFIEKSHT 183 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G + GD K + + L+SLN Y + + + +++ Sbjct: 184 IKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLYFYDNESVRLVGKVI 237 >gi|332686955|ref|YP_004456729.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] gi|332370964|dbj|BAK21920.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] Length = 236 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 28/236 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + L+ +A K G+ ++ + ++ IE E+I IL + Sbjct: 3 IGERIKARRKELKLSADIVAEKLGVSRSTIFRYEKGDIEKLPTNI-LENIAIILHTSPAY 61 Query: 69 ICQL---------------------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + + + + L Sbjct: 62 LMGWEENGPNITILYNKLNAKNQKLTYNFAERRLEEQSQVNSLSLHQKTHQKDHFRLFDW 121 Query: 108 VFPTGNKWNTV---GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 +T D SM P+++ + + + Sbjct: 122 CGYVSAGTGEYLDGEDIRETIQLLEEDIPETADFALTVNGDSMKPVFKNHETIFIEKTTD 181 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + G ++ + K + I L+SLN Y ++ +D I+ + R++ Sbjct: 182 LPSGSIGIVI-VENEAYLKKIYIH-DDCITLVSLNPAYKNIIIKETDAIKVVGRVV 235 >gi|328885526|emb|CCA58765.1| SOS-response repressor and protease LexA [Streptomyces venezuelae ATCC 10712] Length = 262 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 53/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 61 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 110 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T P + P + + + +P Sbjct: 111 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 168 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 169 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 220 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 221 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 256 >gi|296270391|ref|YP_003653023.1| SOS-response transcriptional repressor LexA [Thermobispora bispora DSM 43833] gi|296093178|gb|ADG89130.1| SOS-response transcriptional repressor, LexA [Thermobispora bispora DSM 43833] Length = 238 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 20/219 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNRWPSTESIFKI 61 +KI E I +R PS + L TS ++ +G R Sbjct: 29 QRKILEVIRDSVQRRGYPPSMREIGEAVQLTSTSSVSHQLSALQRKGYLRRDPHRPRALE 88 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + E + T + + + +GG + + +P Sbjct: 89 VRLPGEPAFWVDPDASQGEEGTVSRPQTAYVPVVGRIAAGGPI----LAEQSIEDVFPLP 144 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + SM GD +++ GD + G+ Sbjct: 145 RQLVG-------EGTLFLLRVTGDSMIEAAIADGDWVVVRQQPVAENGDIVAAMID-GEA 196 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L+ N Y + + +++ Sbjct: 197 TVKRFKRK-DGRVWLVPHNPNYEPI--PGDEATILGKVV 232 >gi|254719207|ref|ZP_05181018.1| LexA repressor [Brucella sp. 83/13] gi|265984203|ref|ZP_06096938.1| LexA repressor [Brucella sp. 83/13] gi|306837955|ref|ZP_07470813.1| LexA repressor [Brucella sp. NF 2653] gi|264662795|gb|EEZ33056.1| LexA repressor [Brucella sp. 83/13] gi|306406879|gb|EFM63100.1| LexA repressor [Brucella sp. NF 2653] Length = 240 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDG-------------RTTEKKEKEIPLLYFPPSGSGGFFD 105 + L L + + Sbjct: 61 ARALEVLCLPDSIAPGLSPQKKFAPSVIEGSLGKVAPVQPVRPAPAPQNSEAPATVSVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GD +I+ Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K + SI L + N Y + +++ Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234 >gi|118589993|ref|ZP_01547397.1| LexA repressor [Stappia aggregata IAM 12614] gi|118437490|gb|EAV44127.1| LexA repressor [Stappia aggregata IAM 12614] Length = 236 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 58/231 (25%), Gaps = 13/231 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQYELLMFIHERLKETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVF 109 + + L R + E L P G Sbjct: 61 ARAMEVVRLPDSIAPGLGTPRPRGSFSPEVIEGSLGKPEPAKAAPEPVIGVTEVPVMGRI 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168 G + + + + + SM GD +++ + G Sbjct: 121 AAGVPIEAIQTHSHSITVPQDLIGRGEHYALEVRGDSMIEAGILDGDTVLIRRTDSADSG 180 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K L + SI L + N Y + R++ Sbjct: 181 DIVVALVDDEEATLKRLRKKGA-SIALEAANPAYETRIFGPGRVRVQGRLV 230 >gi|260868710|ref|YP_003235112.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|257765066|dbj|BAI36561.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] Length = 207 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 15/211 (7%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 + +T LA + G+ R +R PS + I + Sbjct: 1 MKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFNHDG 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNGIYA 132 +P F G+ V + S Sbjct: 56 TFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAFWLE 115 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 ++ T P + G +++++ V GD + + + K LI G+ Sbjct: 116 VEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQV 172 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 L LN YP+ + +++ ASQ Sbjct: 173 F-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 200 >gi|148268470|ref|YP_001247413.1| phage repressor [Staphylococcus aureus subsp. aureus JH9] gi|150394533|ref|YP_001317208.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus JH1] gi|257136362|ref|YP_003169636.1| cI repressor-like protein [Staphylococcus phage P954] gi|257793283|ref|ZP_05642262.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258419779|ref|ZP_05682742.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719] gi|282904658|ref|ZP_06312533.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus C160] gi|295407324|ref|ZP_06817122.1| phage repressor [Staphylococcus aureus A8819] gi|297246908|ref|ZP_06930688.1| conserved hypothetical protein [Staphylococcus aureus A8796] gi|147741539|gb|ABQ49837.1| putative phage repressor [Staphylococcus aureus subsp. aureus JH9] gi|149946985|gb|ABR52921.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus JH1] gi|256681204|gb|ACV04947.1| cI repressor-like protein [Staphylococcus phage P954] gi|257787255|gb|EEV25595.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257844190|gb|EEV68576.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719] gi|282594907|gb|EFB99883.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus C160] gi|294967769|gb|EFG43800.1| phage repressor [Staphylococcus aureus A8819] gi|297176260|gb|EFH35547.1| conserved hypothetical protein [Staphylococcus aureus A8796] gi|315128291|gb|EFT84315.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus CGS03] gi|329728105|gb|EGG64548.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus 21172] Length = 238 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 31/236 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K L + Sbjct: 6 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63 Query: 71 QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGGFFDSGVFP------------ 110 + ++ +L + + + Sbjct: 64 GFDISKNRKIENNDITSIYSKLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSE 123 Query: 111 ------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 E S + D K SM PL++ G I+ + + Sbjct: 124 VDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNGQIIFIEKSHT 183 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G + GD K + + L+SLN Y + + + +++ Sbjct: 184 IKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLYFYDNESVRLVGKVI 237 >gi|330828944|ref|YP_004391896.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas veronii B565] gi|328804080|gb|AEB49279.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas veronii B565] Length = 248 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 20/230 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S + +D + L+ A G+ + K N P+ + + Sbjct: 25 MDTLS-----DRLDELRGS--LSYKAFAELVGMSESGMRKYF----PPFNSLPTIDKALR 73 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVG 119 I N + L ++ + + G+ + G + Sbjct: 74 IARTFNVNLEWLATGQGPKHPDGAAEQMVQREEFDEEYALIDGYHVTVSTGHGAFNDDHE 133 Query: 120 VPEIRSPHNGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 V + + SM P GD ++++ + + + Sbjct: 134 VKRKLAFRRKWLTFRKLNPDNLVVVFAKGDSMEPTIHSGDSILVDISKNQIEDGSIFVLR 193 Query: 176 RTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIE---WIARILWA 221 ++ AK L I ++S N YP+ V + +E I +++WA Sbjct: 194 LGEELYAKRLQKNFDGGITIISDNRDDYPLQVVPANQLENLAVIGKVVWA 243 >gi|253577142|ref|ZP_04854463.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14] gi|251843524|gb|EES71551.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14] Length = 208 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 62/226 (27%), Gaps = 32/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M+ S + I E I PS + GL ++ + R +G R Sbjct: 1 MSKVSSRQQAILEFIRNEVRAKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGFIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + + +L + P + T N Sbjct: 61 TK--PRAIELLGQEESENYNLF-------------AHSVTRVPIVGKVTAGVPITATENI 105 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +PE YA SM GD +I+ N GD ++ Sbjct: 106 EDYFPLPEH-------YAADGDIFMLSVVGDSMIEAGIHNGDYVIVRQQQTANNGDIVVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ + + +++ Sbjct: 159 MTEDDEATVKTFYKESD-HIRLQPENSTMEPLRLKH--VTILGKVI 201 >gi|71275563|ref|ZP_00651848.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Dixon] gi|71900792|ref|ZP_00682912.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] gi|71163454|gb|EAO13171.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Dixon] gi|71729469|gb|EAO31580.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] Length = 256 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 66/248 (26%), Gaps = 43/248 (17%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + +T LA + P S + + ++ E++ K A N + Sbjct: 5 ERLRFAMLEAGMTQKQLADAVRVKPPSVHGWL----SSKAKFLRGENLLKAAQALNVSEK 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP---------------------SGSGGFFDSGVF 109 L T +E P P + + Sbjct: 61 WLATGTGPMRAVTANSNQENPSTQGPERTKLDACELRIIDGDEDLDREADVLIDEVDVLL 120 Query: 110 PTGNKWNTVGV-------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 G+ P S ++ + SM D +++N A Sbjct: 121 AAGSGVVIPEFIETKFRMPFPLSWLRDVHISSKDVKLMRVYGDSMERTLFDKDRVLVNLA 180 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD--- 211 ++ G+ K L + R S+ ++S N Y + V + Sbjct: 181 DTRIRDGKVYAIAIGGEAKVKRLYTLRNSSLRIVSDNQNKDSEGHRIYKDEIVPSKEMDT 240 Query: 212 IEWIARIL 219 + I R++ Sbjct: 241 VHIIGRVI 248 >gi|304379184|ref|ZP_07361927.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304342230|gb|EFM08126.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 238 Score = 97.9 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 31/236 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K L + Sbjct: 6 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKIFELAKALNVNEAWLM 63 Query: 71 QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGGFFDSGVFP------------ 110 + ++ +L + + + Sbjct: 64 GFDISKNRKIENNDITSIYSKLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSE 123 Query: 111 ------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 E S + D K SM PL++ G I+ + + Sbjct: 124 VDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNGQIIFIEKSHT 183 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G + GD K + + L+SLN Y + + + +++ Sbjct: 184 IKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLYFYDNESVRLVGKVI 237 >gi|309803435|ref|ZP_07697529.1| peptidase S24-like protein [Lactobacillus iners LactinV 11V1-d] gi|325913398|ref|ZP_08175765.1| peptidase S24-like protein [Lactobacillus iners UPII 60-B] gi|308164444|gb|EFO66697.1| peptidase S24-like protein [Lactobacillus iners LactinV 11V1-d] gi|325477324|gb|EGC80469.1| peptidase S24-like protein [Lactobacillus iners UPII 60-B] Length = 222 Score = 97.9 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 72/229 (31%), Gaps = 20/229 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++++I + ++R+ ++ ++RK + +S ++ R R + + + Sbjct: 1 MRNNEEIMQLLERLKADKKMSLREISRKTDIAVSSISRYFN-----RTRDFPLDKLDRFA 55 Query: 63 AATNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDS-------GVFPT 111 A N + +L++ TT ++++ + + + G Sbjct: 56 KAFNVSPEYILNVSKPCDITTIYNQLHEKRQAKVYNYAREQLDEQLNEKRSIYVVGTSAA 115 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G + D + SM P I+ + + G+ Sbjct: 116 GEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGEIG 172 Query: 172 LIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + K + I L S+N Y + + +++ Sbjct: 173 IFEINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFARDQVRILGKVV 221 >gi|15839101|ref|NP_299789.1| hypothetical protein XF2511 [Xylella fastidiosa 9a5c] gi|9107714|gb|AAF85309.1|AE004058_10 phage-related protein [Xylella fastidiosa 9a5c] Length = 256 Score = 97.9 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 64/248 (25%), Gaps = 43/248 (17%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + +T LA + P S + + ++ E++ K A N + Sbjct: 5 ERLRFAMLEAGMTQKQLADAVRVKPPSVHGWL----SAKAKFLRGENLLKAAQALNVSEK 60 Query: 71 QLLDLPFSDGRTTEKKEKEIP---------------------LLYFPPSGSGGFFDSGVF 109 L T +E P P + + Sbjct: 61 WLATGTGPMRAVTANSNQETPSKQDSKRIKLDACELRVIESDDELDPEADVLLDEIDVML 120 Query: 110 PTGNKWNTVGV-------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 GN P S ++ + SM D +++N A Sbjct: 121 AAGNGILIPEFVETQFKMPFPISWLRDVHINSKDVKLMRVHGDSMERTLFNKDRVMVNFA 180 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD--- 211 ++ G+ K L + + + S N + T+ + Sbjct: 181 DTHVRDGKVYAIAIDGEAKVKRLYTLHNNGLRIASDNHARDSEGHRIHEDRTISPKEIGI 240 Query: 212 IEWIARIL 219 ++ I R++ Sbjct: 241 VQVIGRVI 248 >gi|294631831|ref|ZP_06710391.1| LexA repressor [Streptomyces sp. e14] gi|292835164|gb|EFF93513.1| LexA repressor [Streptomyces sp. e14] Length = 259 Score = 97.9 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 57 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 107 -RDPHRPRAYEVRGSDQAATLQPTDTVGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQQVAENGDIVAAMID-GEA 217 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 218 TVKRFKR-EDGHVWLLPHNAAYEPI--PGDDATILGKVV 253 >gi|21224148|ref|NP_629927.1| LexA repressor [Streptomyces coelicolor A3(2)] gi|13431608|sp|O69979|LEXA_STRCO RecName: Full=LexA repressor gi|2995311|emb|CAA18339.1| SOS regulatory protein [Streptomyces coelicolor A3(2)] Length = 234 Score = 97.9 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 32 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 81 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 82 -RDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 140 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 141 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 192 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 193 TVKRFKR-EDGHVWLLPHNSAYEPI--PGDDATILGKVV 228 >gi|239991243|ref|ZP_04711907.1| LexA repressor [Streptomyces roseosporus NRRL 11379] Length = 265 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 54/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 64 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 113 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T P + P + + + +P Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 223 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + L+ N Y + + +++ Sbjct: 224 TVKRF-RREDGHVWLLPHNAAYQPI--PGDEATILGKVV 259 >gi|182435510|ref|YP_001823229.1| LexA repressor [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776147|ref|ZP_08235412.1| SOS-response transcriptional repressor, LexA [Streptomyces cf. griseus XylebKG-1] gi|178464026|dbj|BAG18546.1| putative SOS regulatory protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656480|gb|EGE41326.1| SOS-response transcriptional repressor, LexA [Streptomyces cf. griseus XylebKG-1] Length = 265 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 54/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 64 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 113 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T P + P + + + +P Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 223 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + L+ N Y + + +++ Sbjct: 224 TVKRF-RREDGHVWLLPHNAAYQPI--PGDEATILGKVV 259 >gi|172045704|sp|Q2K8X2|LEXA_RHIEC RecName: Full=LexA repressor Length = 239 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107 + K+ A N ++ S P S G Sbjct: 61 ARALEVIKLPEAYNPSLQPRRGFSPSVIEGSLGKPQPVAAPAAPKPVADNGNSISVPVMG 120 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 G + + + + + SM+ GD +I+ + + Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232 >gi|329769730|ref|ZP_08261131.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325] gi|328838092|gb|EGF87710.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325] Length = 218 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 20/216 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++HN++ + +A G+ +++N ++ P+ +++ ++ N Sbjct: 5 DRLQALRKKHNISQTAIAEHLGVTRSAYNGWEKGKFI-----PNKKNLEELADYFNVETS 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP-----SGSGGFFDSGVFPTGNK---WNTVGVPE 122 R + + L S + G Sbjct: 60 YFESEYEIVNRYLQLNDINKQKLLKVANELYFSQLYKYRVHAKLSAGLGNYYDENYEFDT 119 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + Y D SM P Y GD+ ++ G + + Sbjct: 120 VYFNSEYDY-----DIASWVDGDSMEPKYHNGDVALIKKTGFDYDG-LIYAVVYNEETYI 173 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + L+SLN Y + ++ + + Sbjct: 174 KK-AYIEEDKVRLVSLNDKYDDIIAPIDEVRIVGLV 208 >gi|296535264|ref|ZP_06897472.1| repressor lexA [Roseomonas cervicalis ATCC 49957] gi|296264404|gb|EFH10821.1| repressor lexA [Roseomonas cervicalis ATCC 49957] Length = 245 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 58/240 (24%), Gaps = 22/240 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----- 55 M + ++ IDR +PS K L S + R R Sbjct: 1 MLTRKQHELLTFIDRHLRDTGFSPSFEEMKDALKLRSKSGIHRLITALEERGFLRRRAHR 60 Query: 56 ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 ES+ + A P + L + Sbjct: 61 ARALEVIRLPESLAQSGALPATAEAPAAAEPPPGFAPNVIRGNFAQNLPGVAHAAAEAGA 120 Query: 106 SG-----VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 G + Q + SM+ + GD +I+ Sbjct: 121 VQLPLYGRIAAGLPIEALRDQGASVEVPMALLGQGDHYALEVAGDSMIGMGILDGDTVII 180 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ ++ K L + G SI L + N Y ++ R++ Sbjct: 181 RRGDTAENGSVVVALVDENEVTLKRLRRK-GNSIALEAANPQYETRIFGPDRVKVQGRLV 239 >gi|254386106|ref|ZP_05001420.1| LexA repressor [Streptomyces sp. Mg1] gi|194344965|gb|EDX25931.1| LexA repressor [Streptomyces sp. Mg1] Length = 264 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 53/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 63 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 112 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + P + P + + + +P Sbjct: 113 --RDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 170 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 171 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 222 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 223 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 258 >gi|297156722|gb|ADI06434.1| LexA repressor [Streptomyces bingchenggensis BCW-1] Length = 267 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 53/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 66 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 115 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T P + P + + + +P Sbjct: 116 --RDPHRPRAYEVRGSDQPSTQPADTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 173 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 174 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 225 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 226 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 261 >gi|157159743|ref|YP_001457061.1| P22 repressor protein c2 [Escherichia coli HS] gi|253774261|ref|YP_003037092.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260856262|ref|YP_003230153.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291283947|ref|YP_003500765.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|157065423|gb|ABV04678.1| P22 repressor protein c2 [Escherichia coli HS] gi|194021560|gb|ACF32369.1| repressor protein C2 [Enterobacteria phage DE3] gi|253325305|gb|ACT29907.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976933|gb|ACT42603.1| Repressor protein C2 [Escherichia coli BL21(DE3)] gi|257754911|dbj|BAI26413.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|290763820|gb|ADD57781.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|313848585|emb|CBY77813.1| P22 repressor protein c2 [Escherichia coli BL21(DE3)] gi|324114861|gb|EGC08828.1| peptidase S24 [Escherichia fergusonii B253] Length = 216 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 67/220 (30%), Gaps = 28/220 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALAKALQCSP 61 Query: 70 C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + + + + + + W Sbjct: 62 DYLLKGEDSLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHRRAIDNW--------- 112 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179 ++ + SM +G I++++ ++ G ++ + Sbjct: 113 --YDTTVDCSEDSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 170 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ GR L LN YP+ + + + I ++ Sbjct: 171 ATFKKLVIDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208 >gi|152996492|ref|YP_001341327.1| putative prophage repressor [Marinomonas sp. MWYL1] gi|150837416|gb|ABR71392.1| putative prophage repressor [Marinomonas sp. MWYL1] Length = 216 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 27/222 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAA--- 64 I E + + LT + LA++ G+ S K + +GR + P ++ K L Sbjct: 3 IAERVKQKRTDLRLTQAELAKRVGISQQSLQKIE----DGRTQNPRKLLNLAKALDCDAE 58 Query: 65 ---TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + E L + + + K++ + P Sbjct: 59 WLLLGTACEVRESASSYTNNNSASTSLETNLRPIITTLQAAQWPNITDLDERKFDWIETP 118 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IKPR 176 E S SM+ +G +++++ ++ GD ++ Sbjct: 119 ESTS---------KSAFWLNVVGDSMMSPSGTSVPEGYLILVDPSLTAKNGDLIITKVAD 169 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + D+ K L+ GR+ L LN Y V +D+ I + Sbjct: 170 SKDVTFKKLVIDAGRTY-LTPLNPNYRPIEVP-NDLTVIGVV 209 >gi|85703699|ref|ZP_01034803.1| phage-related protein [Roseovarius sp. 217] gi|85672627|gb|EAQ27484.1| phage-related protein [Roseovarius sp. 217] Length = 219 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 64/226 (28%), Gaps = 25/226 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WPSTESIFKILAATN 66 I ID ++ + + +R A + S K+ R +G R W S E + ++L Sbjct: 4 ILNQIDEALKKKGYSDAKASRLA-VGHPSLIKNFRMKRDGDKRYNWASLERLAEVLD--- 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIR 124 + G V Sbjct: 60 ---------LELYFGPPREAGTVYTTQLGHDDFDVILRLDARLAAGAGVENGEVSYEGAL 110 Query: 125 SPHNGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + +Q + SM P+ R D+++++ + Sbjct: 111 AFCRKWLNEHNISPSQACLMRVSGDSMCPMLRDDDVVMIDQRKTTIRNRHVYALVDVDGS 170 Query: 181 -VAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWAS 222 K + I L S N YP +T +M+ I + I+W+S Sbjct: 171 SRVKRVELVENEMIILSSDNPNYPTETRRGPDMNRIRILGEIVWSS 216 >gi|222032723|emb|CAP75462.1| Repressor protein [Escherichia coli LF82] Length = 216 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 26/219 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALANALKCSP 61 Query: 70 CQLLDLPF----SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L+ + PL+ + +G N S Sbjct: 62 DYLIKGEESLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHK-RAIDNWYDTTVDCS 120 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180 + SM +G I++++ ++ G ++ + Sbjct: 121 E---------DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEA 171 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ GR L LN YP+ + + + I ++ Sbjct: 172 TFKKLVIDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208 >gi|329939980|ref|ZP_08289262.1| SOS-response repressor and protease LexA [Streptomyces griseoaurantiacus M045] gi|329300806|gb|EGG44702.1| SOS-response repressor and protease LexA [Streptomyces griseoaurantiacus M045] Length = 234 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 32 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 81 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 82 -RDPHRPRAYEVRGSDQAAPVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 140 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 141 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIV-AAMLEGEA 192 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 193 TVKRFKR-EDGHVWLLPHNSAYEPI--PGDDATILGKVV 228 >gi|158334468|ref|YP_001515640.1| S24 family peptidase [Acaryochloris marina MBIC11017] gi|158304709|gb|ABW26326.1| peptidase, S24 family [Acaryochloris marina MBIC11017] Length = 227 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 10/202 (4%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + LA+ G++ + K RN E + + L E + Sbjct: 27 NATHLAKVVGVNDRTIRKWMAGTEPARN---YLELLAEKLEVNIEWLVLGRGPIRRVDGG 83 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 LY +G+G + + + + Sbjct: 84 IGDGTYVQIPLYDVRAGAGEGMIAEDK--EQIEELMAFSRSWIRSE-LRTSPAHLSLIHV 140 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P R GD+++++ D + + R G + K L G+ + ++S N Y Sbjct: 141 SGDSMEPTLRPGDVVLVDQHQAEGGTDGVYVLRRDGHLQIKRLHWLSGKVLKIISDNPIY 200 Query: 203 PVDTVEM----SDIEWIARILW 220 V++ + + I R++W Sbjct: 201 QPIEVDLSQLTEEFQIIGRVIW 222 >gi|312873589|ref|ZP_07733636.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311090842|gb|EFQ49239.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] Length = 228 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 25/224 (11%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT------- 65 ID ++NLT L +K G +S ++ R+P E I +I Sbjct: 12 IDYFRRQNNLTMEELGQKLGKAKSSISRWVSGE-----RYPKIEEIEQIANFFNTDIYTL 66 Query: 66 --NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-------GVFPTGNKWN 116 + ++ + + + G G Sbjct: 67 IFGFNYNEDSKSDLLTVYNQLTDIRKHKVYSYAQQQLDEQLNDKSSIYVVGTSAAGEPIE 126 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + D + SM P I+ + + G+ + + Sbjct: 127 YGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGEIGIFEIN 183 Query: 177 TGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L S+N Y + + +++ Sbjct: 184 GSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 227 >gi|239944779|ref|ZP_04696716.1| LexA repressor [Streptomyces roseosporus NRRL 15998] gi|291448242|ref|ZP_06587632.1| LexA repressor [Streptomyces roseosporus NRRL 15998] gi|291351189|gb|EFE78093.1| LexA repressor [Streptomyces roseosporus NRRL 15998] Length = 265 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 54/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 64 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMVLERKGFLR---------- 113 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T P + P + + + +P Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 223 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + L+ N Y + + +++ Sbjct: 224 TVKRF-RREDGHVWLLPHNAAYQPI--PGDEATILGKVV 259 >gi|241204519|ref|YP_002975615.1| LexA repressor [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858409|gb|ACS56076.1| SOS-response transcriptional repressor, LexA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 239 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107 + K+ A + +I S S G Sbjct: 61 ARALEVIKLPEAYSPSIQPRRGFSPSVIEGSLGKPQPVAAPAPAKPVADNGNSVSVPVMG 120 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 G + + + + + SM+ GD +I+ + + Sbjct: 121 RIAAGVPISAIQNNTHDIAVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232 >gi|282862307|ref|ZP_06271369.1| SOS-response transcriptional repressor, LexA [Streptomyces sp. ACTE] gi|282562646|gb|EFB68186.1| SOS-response transcriptional repressor, LexA [Streptomyces sp. ACTE] Length = 265 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 53/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 64 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 113 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T P + P + + + +P Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLD-GEA 223 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 224 TVKRFKR-EDGHVWLLPHNSAYQPI--PGDEATILGKVV 259 >gi|103485728|ref|YP_615289.1| putative phage repressor [Sphingopyxis alaskensis RB2256] gi|98975805|gb|ABF51956.1| putative phage repressor [Sphingopyxis alaskensis RB2256] Length = 222 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 9/213 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 A+DR+ + + L++ G +P + + G R + + +I A + Sbjct: 10 AALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKR---GSPRRLAEQDRARIAAYLGVSEA 66 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + + L+ + V G Sbjct: 67 MLGGPVARVATPARSRGAGMILVPK-LAIGASAGAGASVDGEPVEGEVAFNPKWLRDLG- 124 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 A + + + SM P GD ++++ S D + + ++ K + Sbjct: 125 -ADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAARLRDGIYVLRMDDVLMVKRIARAP 183 Query: 190 G-RSIDLMSLNCCYPVD-TVEMSDIEWIARILW 220 G + ++S N Y + +S I + R++W Sbjct: 184 GPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVW 216 >gi|302537349|ref|ZP_07289691.1| LexA repressor [Streptomyces sp. C] gi|302446244|gb|EFL18060.1| LexA repressor [Streptomyces sp. C] Length = 263 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 53/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 62 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 111 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + P + P + + + +P Sbjct: 112 --RDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 169 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 170 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 221 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 222 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 257 >gi|83942599|ref|ZP_00955060.1| LexA repressor [Sulfitobacter sp. EE-36] gi|83953840|ref|ZP_00962561.1| LexA repressor [Sulfitobacter sp. NAS-14.1] gi|83841785|gb|EAP80954.1| LexA repressor [Sulfitobacter sp. NAS-14.1] gi|83846692|gb|EAP84568.1| LexA repressor [Sulfitobacter sp. EE-36] Length = 232 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 66/229 (28%), Gaps = 13/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLAFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ + DG + + S G G Sbjct: 61 ARAIEVVKLPDSLGSLSGAGFTPRVIDGDRPDGPPPSAAQP--VSASSFDVPMMGRIAAG 118 Query: 113 NKWNTVGV-PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + + + G+ + + + Q SM+ GD++I+ + GD Sbjct: 119 VPIEAISTMTQSVAVPGGMISGSGEHYALEVQGDSMIDAGINDGDVVIIRETSVADDGDI 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K G S+ L + N Y + ++ R++ Sbjct: 179 VVALVEDHEATLKKFRRH-GSSVALEAANPAYETRVLPSDKVKVQGRLV 226 >gi|288556885|ref|YP_003428820.1| LexA repressor [Bacillus pseudofirmus OF4] gi|288548045|gb|ADC51928.1| LexA repressor [Bacillus pseudofirmus OF4] Length = 207 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 39/229 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51 M+ S ++I + I ++ PS + GL +S ++ ++ G+ R Sbjct: 1 MSKLSKRQQEILDYIKIEVKKKGYPPSVREIGEAVGLASSSTVHGHLSRLEKKGLI--RR 58 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 P+ ++L + P + Sbjct: 59 DPTKPRAIEVLEM-----------------DELDPVVHEKKTAYVPIVGKVTAGMPITAI 101 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 N + +P+ ++ +Y Q SM GD++I+ N GD Sbjct: 102 ENVEEYLPLPDHLVTNDSVY-------VLVIQGDSMIEAGIYDGDMVIVRQQQTANNGDI 154 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + I L N ++ D+ + +++ Sbjct: 155 IVAMTEENEATVKRFFREKD-YIRLQPENSTMEPILLK--DVTVLGKVI 200 >gi|261492598|ref|ZP_05989151.1| CI repressor [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494900|ref|ZP_05991372.1| CI repressor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309436|gb|EEY10667.1| CI repressor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311757|gb|EEY12907.1| CI repressor [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 228 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 64/231 (27%), Gaps = 26/231 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + + + NL+ + A+ G+ + K R P +I + Sbjct: 1 MSDLS-----SRLSGLLAQKNLSMNEFAKMVGVTQPAIAKIVNGET----RSPK--NIVE 49 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---- 116 I A + + L K K S GN Sbjct: 50 IADALDVDVNWLKTGKGEA-PDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNGSFVTGD 108 Query: 117 ------TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 V A + SM P GD+L +++ GD Sbjct: 109 LTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTTKSAYQGDG 168 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218 + + ++ K L G + ++S N Y + ++ ++ Sbjct: 169 VYVFSYGENLYVKRLQF-AGDELLVISDNPLYKEWRITSENEHKLQIHGKV 218 >gi|44888100|sp|Q82KE0|LEXA_STRAW RecName: Full=LexA repressor Length = 234 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 54/219 (24%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 32 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 81 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P + P + + + +P Sbjct: 82 -RDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 140 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 141 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 192 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 193 TVKRFKR-EDGHVWLLPHNSAYQPI--PGDEATILGKVV 228 >gi|15614919|ref|NP_243222.1| LexA repressor [Bacillus halodurans C-125] gi|13431641|sp|Q9KAD3|LEXA_BACHD RecName: Full=LexA repressor gi|10174976|dbj|BAB06075.1| transcriptional repressor of the SOS regulon [Bacillus halodurans C-125] Length = 207 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 63/229 (27%), Gaps = 39/229 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51 M+ S ++I + I PS + GL +S ++ ++ G R Sbjct: 1 MSKLSRRQQEILDYIKEEVRAKGYPPSVREIGEAVGLASSSTVHGHLSRLEKKGYI--RR 58 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 P+ ++L E + P + Sbjct: 59 DPTKPRAIEVLD-----------------LENLASETTEAKATYIPVVGKVTAGLPITAV 101 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 N +PE + ++ + Q SM GD++I+ + GD Sbjct: 102 ENVEEYFPLPEQLTAND-------NTYALRIQGDSMIEAGIFDGDLVIVRQQQTADNGDI 154 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + I L N + + +++ Sbjct: 155 IVAMTEEDEATVKRFFREKD-YIRLQPENSTMEPIILTT--CTILGKVI 200 >gi|254391042|ref|ZP_05006250.1| LexA repressor [Streptomyces clavuligerus ATCC 27064] gi|13431612|sp|O86847|LEXA_STRCL RecName: Full=LexA repressor gi|197704737|gb|EDY50549.1| LexA repressor [Streptomyces clavuligerus ATCC 27064] Length = 239 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 52/219 (23%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 38 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 87 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 P + P + + + +P Sbjct: 88 --RDPHRPRAYEVRGSDQPSAQPADTSGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 145 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 146 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 197 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D + +++ Sbjct: 198 TVKRFKR-ENGHVWLLPHNAAYQPI--PGDDATILGKVV 233 >gi|303248682|ref|ZP_07334936.1| putative phage repressor [Desulfovibrio fructosovorans JJ] gi|302489938|gb|EFL49864.1| putative phage repressor [Desulfovibrio fructosovorans JJ] Length = 226 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 12/202 (5%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + + LA G+ ++ ++K+ + + + T L + Sbjct: 30 SQAELAALLGVHRSAVTQAKKKDAVPKA------WVLAVSRRTGADADWLEYGRPAKSAA 83 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 ++ P + P + G F T + +V VP + Sbjct: 84 KNDTAEDGPYIGVPKVRARLSAGGGSFETRGEVESV-VPFRGDWLRRKGNVSG-MVLMDV 141 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P R GD ++++ + ++ K + R S+ L+S N Y Sbjct: 142 VGNSMEPEIRHGDTVLIDQGQTAIVAHGVYAMGVEDTVLVKRVEKRP-GSLVLLSDNRDY 200 Query: 203 PVDTVEMSDI---EWIARILWA 221 + +I I R+LW Sbjct: 201 APIVLSGDEIDALRVIGRVLWV 222 >gi|110680397|ref|YP_683404.1| LexA repressor [Roseobacter denitrificans OCh 114] gi|123065396|sp|Q163X5|LEXA_ROSDO RecName: Full=LexA repressor gi|109456513|gb|ABG32718.1| LexA repressor [Roseobacter denitrificans OCh 114] Length = 233 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 64/229 (27%), Gaps = 12/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ +G + + + G G Sbjct: 61 ARAIEIVKLPETLGGAARGGFTPRVIEGDKPDAPLPAGAQA-VSSADAVALPLVGRIAAG 119 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + G + + + + SM+ GD++++ + GD Sbjct: 120 LPIEAINQNSASVAVPGQMLSGKGDHYALEVKGDSMIDAGINDGDVVVIRETSVADNGDI 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + + G SI L + N Y ++ +++ Sbjct: 180 VVALIEDHEATLKRYMRK-GSSIALEAANPAYETRVFTEDKVKVQGKLV 227 >gi|307580165|gb|ADN64134.1| hypothetical protein XFLM_11395 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 246 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 43/240 (17%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 +T LA + P S + + ++ E++ K A N + L Sbjct: 3 EAGMTQKQLADAVRVKPPSVHGWL----SSKAKFLRGENLLKAAQALNVSEKWLATGTGP 58 Query: 79 DGRTTEKKEKEIPLLY---------------------FPPSGSGGFFDSGVFPTGNKWNT 117 T +E P P + + GN Sbjct: 59 MRAVTANSNQENPSTQGPERTKLDACELRVVESDDDLDPETDVLIDEVDVLLAAGNGVVI 118 Query: 118 VGV-------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 P S ++ + SM D +++N A + Sbjct: 119 PEFIETKFRMPFPLSWLRDVHISSKDMKLMRVYGDSMERTLFDKDRVLVNLADTRIRDGK 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD---IEWIARIL 219 + G+ K L + R + ++S N Y +TV + + I R++ Sbjct: 179 VYAIAIGGEAKIKRLYTLRNNGLRIVSDNQNKDSEGHRIYKDETVPPKEMDTVHIIGRVI 238 >gi|239908033|ref|YP_002954774.1| hypothetical protein DMR_33970 [Desulfovibrio magneticus RS-1] gi|239797899|dbj|BAH76888.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 235 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 11/216 (5%) Query: 14 DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR----NRWPSTESIFKILAATNET 68 +R A+ L + + LA G+ ++ ++KR + T + L Sbjct: 19 ERAAKAAGLASQAELAALLGVHRSAVTQAKRKEAVPKAWVLTVSRRTGADPDWLEYGRRR 78 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 P + G F TG + V P + Sbjct: 79 SGAGRGDGRGSAADDGAAVAAEIFAAVPKVRARLSAGGGSFETGGEVERV-YPFRQDWLR 137 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 ++ SM P R GD+++++ + ++ K + R Sbjct: 138 -AKGQPSRMVLMDVVGNSMEPEIRHGDMVLIDQGQTAVVAHGVYAVGLEDTVLVKRVEKR 196 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEW---IARILWA 221 G+ + L+S N Y + +++ I R+LW Sbjct: 197 PGQ-LVLLSDNRDYAPIVLAGDELDALRFIGRVLWV 231 >gi|146279124|ref|YP_001169283.1| LexA repressor [Rhodobacter sphaeroides ATCC 17025] gi|166224643|sp|A4WX64|LEXA_RHOS5 RecName: Full=LexA repressor gi|145557365|gb|ABP71978.1| SOS-response transcriptional repressor, LexA [Rhodobacter sphaeroides ATCC 17025] Length = 228 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 63/223 (28%), Gaps = 5/223 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ + I +R + PS K LD S + R R Sbjct: 1 MLTRKQMELLDFIKTRMDRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + ++ E + + G G + Sbjct: 61 ARAIEIVKLPEAMERAGFAPRVIEGDRTEPPRGARPVETANALDLPLMGRIAAGLPIEAI 120 Query: 119 -GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + + + + + Q + + SM GDI+++ + GD ++ Sbjct: 121 TDGAQSVTVPSMMLSGRGQHYALEVRGDSMIEAGINDGDIVVIREQQTADNGDIVVALVA 180 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R G I L N Y ++ R++ Sbjct: 181 DHEATLKRFRRR-GGMIALEPANASYETQVYPDHMVKVQGRLV 222 >gi|239982724|ref|ZP_04705248.1| LexA repressor [Streptomyces albus J1074] gi|291454573|ref|ZP_06593963.1| LexA repressor [Streptomyces albus J1074] gi|291357522|gb|EFE84424.1| LexA repressor [Streptomyces albus J1074] Length = 261 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 52/219 (23%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 60 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 109 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 P + P + + + +P Sbjct: 110 --RDPHRPRAYEVRGSDQPSAQPADTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 167 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 168 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 219 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L+ N Y + + +++ Sbjct: 220 TVKRFKR-EDNHIWLLPHNAAYQPI--PGDEATILGKVV 255 >gi|196233812|ref|ZP_03132651.1| putative phage repressor [Chthoniobacter flavus Ellin428] gi|196222174|gb|EDY16705.1| putative phage repressor [Chthoniobacter flavus Ellin428] Length = 311 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 4/207 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R L+ LA+ G GR E I ++L T +L Sbjct: 100 LREALRRRELSAGQLAKLIGYKAPIVENVVHGT--GRISESMAEKIEEVLDH-EITKEEL 156 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + + G G+ N E Sbjct: 157 MAGSETPITLDPTGFRGTMGMKPSTPGMRKVPLISWAAAGSLHNASAFDEDYDGEAIETN 216 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-SRRGR 191 + + K + SM P GDI ++ S I+ G +L++ GD+ K R Sbjct: 217 VPGRVFSVKIEGDSMYPEINPGDIAVVRSDIEPRPGQVVLVRTLDGDVWCKRYSTRDGNR 276 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L S+N Y + I WI + Sbjct: 277 FVVLSSINDTYRPFEISAESIAWIYPV 303 >gi|116251992|ref|YP_767830.1| LexA repressor [Rhizobium leguminosarum bv. viciae 3841] gi|122988547|sp|Q1MH39|LEXA_RHIL3 RecName: Full=LexA repressor gi|115256640|emb|CAK07728.1| putative LexA repressor (SOS regulatory protein) [Rhizobium leguminosarum bv. viciae 3841] Length = 239 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ A + +I S + K + + S + V G Sbjct: 61 ARALEVIKLPEAYSPSIQPRRGFSPSVIEGSLGKPQPVATPAPAKSVADNGNSVSVPVMG 120 Query: 113 NKWNTVGVPEIRSPHNGIYAI-----QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 V + I++ + I + + + SM+ GD +I+ + + Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232 >gi|15965363|ref|NP_385716.1| LexA repressor [Sinorhizobium meliloti 1021] gi|307312740|ref|ZP_07592371.1| transcriptional repressor, LexA family [Sinorhizobium meliloti BL225C] gi|307317224|ref|ZP_07596665.1| transcriptional repressor, LexA family [Sinorhizobium meliloti AK83] gi|25453100|sp|Q92PW3|LEXA_RHIME RecName: Full=LexA repressor gi|15074543|emb|CAC46189.1| Putative LexA repressor transcription regulator [Sinorhizobium meliloti 1021] gi|306897312|gb|EFN28057.1| transcriptional repressor, LexA family [Sinorhizobium meliloti AK83] gi|306899465|gb|EFN30097.1| transcriptional repressor, LexA family [Sinorhizobium meliloti BL225C] Length = 238 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + K+ A+ + + S G Sbjct: 61 ARALEVIKLPEAYAGASQVRRGFSPSVIEGSLGKPAAPPPAPKPAPPAEAASVAVPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G + + + + + SM GD +I+ + + Sbjct: 121 IAAGVPISAIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDTVIIRNGSTASP 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ R++ Sbjct: 181 GDIVVALIDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGRLV 231 >gi|226366183|ref|YP_002783966.1| LexA repressor [Rhodococcus opacus B4] gi|226244673|dbj|BAH55021.1| LexA repressor [Rhodococcus opacus B4] Length = 243 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 20/223 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRW----PSTES 57 +++ E I PS + GL TS ++ + +G R P Sbjct: 26 QRRVLEVIRTSVNERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDPNRPRAVD 85 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + +P F P + + Sbjct: 86 VRGLDEVAAGAAANAGAAVGLAAVKSGTDSAPLPEPTFVPVLGRIAAGGPILAEEAVEDV 145 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P Q K SM+ GD +++ + GD + Sbjct: 146 FPLPRELVG-------QGSLFLLKVVGESMIDAAICDGDWVVVRQQNVADNGDIVAAMID 198 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + LM N + +D + +++ Sbjct: 199 -GEATVKTFKR-TDSEVWLMPHNPLFDPI--PGNDAAILGKVV 237 >gi|323156532|gb|EFZ42685.1| repressor protein C2 [Escherichia coli EPECa14] Length = 211 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 67/220 (30%), Gaps = 28/220 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 2 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALAKALQCSP 56 Query: 70 C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + + + + + + W Sbjct: 57 DYLLKGEDSLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHRRAIDNW--------- 107 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179 ++ + SM +G I++++ ++ G ++ + Sbjct: 108 --YDTTVDCSEDSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 165 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ GR L LN YP+ + + + I ++ Sbjct: 166 ATFKKLVIDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 203 >gi|255264421|ref|ZP_05343763.1| LexA repressor [Thalassiobium sp. R2A62] gi|255106756|gb|EET49430.1| LexA repressor [Thalassiobium sp. R2A62] Length = 232 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 58/227 (25%), Gaps = 9/227 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------S 54 M + + E I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +I + + + G G Sbjct: 61 ARAIEIVKLPDAMADNGPRGFTPQVIEGDRPDSTPHDARPVETTHAIELPVMGKIAAGVP 120 Query: 115 WNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + G A + + + SM+ GD++++ + GD ++ Sbjct: 121 IEAISHAAHSVAVPGGMVAGTCEHYALEVKGDSMIDAGINDGDVVVIKETSTADNGDIVV 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K SI L + N Y ++ R++ Sbjct: 181 ALVEDQEATLKRFRRNGA-SIALEAANPAYETRVFNDDQVKVQGRLV 226 >gi|227822058|ref|YP_002826029.1| LexA repressor [Sinorhizobium fredii NGR234] gi|227341058|gb|ACP25276.1| LexA repressor [Sinorhizobium fredii NGR234] Length = 254 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 66/230 (28%), Gaps = 12/230 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 19 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 78 Query: 53 PSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + K+ + + +G + P+ + S G Sbjct: 79 ARALEVIKLPEAYSAPSQPRRGFSPSVIEGSLGKPPAAPKPVPAPAENTSMTVPVMGRIA 138 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169 G + + + + + SM GD +I+ +A + GD Sbjct: 139 AGVPISAIQNNTHEISVPVEMIGNGEHYALEIKGDSMIEAGILDGDTVIIRNANTASPGD 198 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + SI L + N Y ++ +++ Sbjct: 199 IVVALIDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGKLV 247 >gi|237750719|ref|ZP_04581199.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373809|gb|EEO24200.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 243 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 65/244 (26%), Gaps = 41/244 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ I E LT + L + +G+ S + + +++ KI A + Sbjct: 2 KLGLKIKTAREEKGLTQNDLVKISGVSRASLQLYEADKGN-----ITLDNLEKIANALDY 56 Query: 68 TICQL-----LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF------------------- 103 + + ++ + F Sbjct: 57 EVVHFLSSNVVPQSKKTCPPICPSIEKNMSPNMSLNNICEFIENDSPLPPTQSNNSVRIP 116 Query: 104 -FDSGVFPTGNKWN-------TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 +D G + + + + + + SMLP + Sbjct: 117 VYDEVYASAGQGFINDEHITQHIELDKGFLRSYFGLTSFLDLSIITARGDSMLPAVPENC 176 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 +I+ G + + ++ K L R L+S N Y +E + E + Sbjct: 177 QIIVQKG-TPREGQICVTRID-DELYVKRLQKRP--KYKLISDNKSYDDIELEGENYEIL 232 Query: 216 ARIL 219 ++ Sbjct: 233 GIVV 236 >gi|111023746|ref|YP_706718.1| LexA repressor [Rhodococcus jostii RHA1] gi|110823276|gb|ABG98560.1| repressor LexA [Rhodococcus jostii RHA1] Length = 243 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 20/223 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRW----PSTES 57 +++ E I PS + GL TS ++ + +G R P Sbjct: 26 QRRVLEVIRTSVNERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDPNRPRAVD 85 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + +P F P + + Sbjct: 86 VRGLDEVAAGAAANASAAVGLAAVKSGADGAPLPEPTFVPVLGRIAAGGPILAEEAVEDV 145 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P Q K SM+ GD +++ GD + Sbjct: 146 FPLPRELVG-------QGSLFLLKVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID 198 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + LM N + +D + +++ Sbjct: 199 -GEATVKTFKRTENE-VWLMPHNPLFDPI--PGNDAVILGKVV 237 >gi|260853764|ref|YP_003227655.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|293403667|ref|ZP_06647758.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298379279|ref|ZP_06989160.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|300903179|ref|ZP_07121111.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300929088|ref|ZP_07144582.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|301019699|ref|ZP_07183852.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|301301704|ref|ZP_07207839.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|257752413|dbj|BAI23915.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291429520|gb|EFF02540.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280392|gb|EFI21896.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|299882087|gb|EFI90298.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|300404794|gb|EFJ88332.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300462961|gb|EFK26454.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|300843201|gb|EFK70961.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|315252878|gb|EFU32846.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] gi|323965045|gb|EGB60506.1| peptidase S24 [Escherichia coli M863] Length = 229 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + LT L G+ + K + T I +I A Sbjct: 7 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + +T + + G E+ Sbjct: 61 WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 117 Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM GD+L ++ ++ GD + Sbjct: 118 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 177 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 178 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 218 >gi|88706898|ref|ZP_01104597.1| Peptidase S24-like protein [Congregibacter litoralis KT71] gi|88698820|gb|EAQ95940.1| Peptidase S24-like protein [Congregibacter litoralis KT71] Length = 222 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 13/224 (5%) Query: 1 MTSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTES 57 MT H I + ++ + + LAR AG + + ++ + +G R + Sbjct: 1 MT-RKHIPIRLKNLEALIREAG-SAVRLARAAGTNSSYLSQVRNQLPTKKGTPRAIGDDL 58 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K+ AA N+ + + T S V + Sbjct: 59 ASKLEAAMNKPPGWMDEEH-----PTGPDLTAERDESNTGSQHRLIPWDQVGKGHDISED 113 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PR 176 + P + + + + SM P +R+G+++ ++ V G ++++ Sbjct: 114 LPPPYGTTLLRCPVECSPETFVLRVRGASMEPKFREGELIFVDPQAPVEHGKFVVVRLEE 173 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + ++ K LI G+ L +LN +P +E++ D I+ Sbjct: 174 SNEVTFKQLILEEGKKY-LKTLNPDWPNRIIEVNPDTPICGVII 216 >gi|85708726|ref|ZP_01039792.1| LexA repressor [Erythrobacter sp. NAP1] gi|85690260|gb|EAQ30263.1| LexA repressor [Erythrobacter sp. NAP1] Length = 234 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 57/227 (25%), Gaps = 12/227 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--R 51 M + ++ I + E ++PS + L S + + G R R Sbjct: 1 MLTAKQHELIRFIQQRLEETGISPSFEEMKEALDLKSKSGVHRLISALEERGFIRRLPNR 60 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + E I A Q + + P + G Sbjct: 61 ARALEVIKVPEDAVTSPRSQAAPAALAANEAVASASSVMARAPEPANDVIEIPLHGRIAA 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 G + + P + + SM GD ++ G+ Sbjct: 121 GAPIEALE-GQNSLPVPAALLGPGEHYALEVSGDSMIEAGIFDGDFALVRRTNTARDGEI 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++ R + K L + L N Y ++E + Sbjct: 180 VVALVRGEEATLKYLHKEGA-MVRLDPANATYDAQVYGPDEVEVQGK 225 >gi|256375571|ref|YP_003099231.1| SOS-response transcriptional repressor, LexA [Actinosynnema mirum DSM 43827] gi|255919874|gb|ACU35385.1| SOS-response transcriptional repressor, LexA [Actinosynnema mirum DSM 43827] Length = 235 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 63/223 (28%), Gaps = 31/223 (13%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTES 57 + +K+ + I +R PS + GL TS + +E + R P+ Sbjct: 32 TLRQRKVLDVIRDWVDRFGYPPSVREIGEAVGLTSTSSVAHQLRALERKGFLRRDPNRPR 91 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 +L T P + P + + + Sbjct: 92 AVGVL---------------PAEIVTGLDPAAKPTPAYVPMLGRIAAGGPILAEQSIEDV 136 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P + + K SM+ GD +++ + G+ ++ Sbjct: 137 FPLPREIVG-------EGEVFLLKVVGDSMVDAAITDGDWVVVRQQPTADNGE-VVAAMI 188 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + + L+ N Y + + +++ Sbjct: 189 EGEATVKTFKRKDDGHVWLLPQNPAYQPIF--GDEATILGKVV 229 >gi|218289122|ref|ZP_03493358.1| transcriptional repressor, LexA family [Alicyclobacillus acidocaldarius LAA1] gi|218240705|gb|EED07884.1| transcriptional repressor, LexA family [Alicyclobacillus acidocaldarius LAA1] Length = 202 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 38/226 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M+ + ++ I E I + PS + GL ++ + +R +G R Sbjct: 1 MSGLTARQRAILEFIRKNIREKGYPPSVREIGEAVGLASSSTVHGHLERLQQKGYLR--- 57 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + E+ + P G G Sbjct: 58 -------------------------RDPTKPRALELLVDDEEPGDVVLAPIVGRVTAGLP 92 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + + E P A + + SM+ GD+ I+ + GD ++ Sbjct: 93 ISALEDIEGYLPLPRDVAKGDEVFALRVVGESMINAGILDGDLAIVRRQTSADNGDIVVA 152 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N P + + +++ Sbjct: 153 MTDEDEATIKRFYR-EDGRVRLQPENDDMPPLYFPN--VTILGKVI 195 >gi|154248291|ref|YP_001419249.1| LexA repressor [Xanthobacter autotrophicus Py2] gi|229470196|sp|A7INJ8|LEXA_XANP2 RecName: Full=LexA repressor gi|154162376|gb|ABS69592.1| SOS-response transcriptional repressor, LexA [Xanthobacter autotrophicus Py2] Length = 237 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 56/232 (24%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + + I + + PS K LD S + R R + Sbjct: 1 MLTRKQYDLLRFIHERLKETGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAA----------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + L S + K + G Sbjct: 61 ARALEVVRLPDSVAPGLATPRSASRGFSPSVIEGSLGKVRPAADDDEGAGQVVTVPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G+ + + + + + SM GD +++ + Sbjct: 121 IAAGSPISAIQTRSHTLNIPPEMLGSGEHFALEVRGDSMIEAGILDGDTVLIRKCDTADT 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K L + SI L + N Y + R++ Sbjct: 181 GDIIVALVDDEEATLKRLRKKGA-SIALEAANPAYETRIFGPDRVRIQGRLI 231 >gi|331657741|ref|ZP_08358703.1| repressor protein C2 [Escherichia coli TA206] gi|315299798|gb|EFU59038.1| peptidase S24-like domain protein [Escherichia coli MS 16-3] gi|331055989|gb|EGI27998.1| repressor protein C2 [Escherichia coli TA206] Length = 216 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 26/219 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALAKALQCSP 61 Query: 70 C----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L + PL+ + +G N S Sbjct: 62 DYLLKGEDSLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHK-RAIDNWYDTTVDCS 120 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180 + SM +G I++++ ++ G ++ + Sbjct: 121 E---------DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEA 171 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ GR L LN YP+ + + + I ++ Sbjct: 172 TFKKLVIDAGRRF-LKPLNPQYPMIEINGN-CKIIGVVV 208 >gi|319957707|ref|YP_004168970.1| phage repressor [Nitratifractor salsuginis DSM 16511] gi|319420111|gb|ADV47221.1| putative phage repressor [Nitratifractor salsuginis DSM 16511] Length = 218 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 9/195 (4%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 +A + G+ +F K+ G P E + D P Sbjct: 27 KDVAAELGIGQATFATMKKRGSI-----PYKEIMEFCARRKISINWLFFDQPAEMLVEET 81 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 K + + +GG D + + V + + Sbjct: 82 GKFFRVRYFADIRASAGGGADVFN----ENYEYIDVDRTLMENLVGAYPSKGIEAIHVEG 137 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P G I+ ++ D + + + K + R ++L+S N Y Sbjct: 138 ESMEPTLPDGSIVFIDREQTDPSKDGIFVAATGNGLFIKRIRRRADGMVELISDNPLYTP 197 Query: 205 DTVEMSDIEWIARIL 219 + + +E + R++ Sbjct: 198 EVLSPDQVEIVGRVV 212 >gi|262372962|ref|ZP_06066241.1| LexA repressor [Acinetobacter junii SH205] gi|262312987|gb|EEY94072.1| LexA repressor [Acinetobacter junii SH205] Length = 224 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 70/223 (31%), Gaps = 24/223 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + +T LA+K+G+ + + + + ST SI + Sbjct: 5 MATL-----GDNLKSIRKAKKMTQKELAQKSGVKQSVISDLETGNAK------STGSILE 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A T +L S + +G N + Sbjct: 54 LANALGVTAEELKKGVISTLDNNVAPVSSKLIPVLSWVQAGTMTSVEAIDPKNINEWLP- 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRLLIKPRT 177 + S P Y GD +++N + + D ++++ + Sbjct: 113 -------PLSVDDPDGCFYLRVVGVSNYPTYADGDYILVNPSYQVCDLISEDLVVVRSNS 165 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 K L+ L +LN + + +E + +E + ++ Sbjct: 166 D-ATFKKLVIESDERKYLQALNPNFQPNIIEFEEGMELVGLVI 207 >gi|146329855|ref|YP_001209677.1| regulatory protein RegA2 [Dichelobacter nodosus VCS1703A] gi|146233325|gb|ABQ14303.1| regulatory protein RegA2 [Dichelobacter nodosus VCS1703A] Length = 305 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 19/227 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E +NL+ LA K G + K + R + + L ++ Sbjct: 76 LASNVKILRELNNLSQDQLAEKIGKSQAAIQKIEAGLT---LRPRFLQDLANALGVSSID 132 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------GFFDSGVFPTGNK----- 114 + + E + S FF F G Sbjct: 133 LEYKDFEKELKKQAIESDIGTMGKFRLWSSNDPLPEDEYAYLPFFKDVEFQGGTGCCEMQ 192 Query: 115 -WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 +N +P +S + Q SM P+ KG L +N A V + Sbjct: 193 DYNGFRLPFAKSTLHRYGVPLDQAFCVTLTGNSMEPVIPKGSTLGINKADTVLKEGDIYA 252 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARIL 219 + K L I + S N Y + V +IE I R+ Sbjct: 253 IRQDDLFRVKRLYHAPNGMIRISSFNQEEYKDELVRPENIEIIGRVF 299 >gi|146328782|ref|YP_001209185.1| regulatory protein RegA1 [Dichelobacter nodosus VCS1703A] gi|1628367|emb|CAA67160.1| regulatory protein [Dichelobacter nodosus] gi|146232252|gb|ABQ13230.1| regulatory protein RegA1 [Dichelobacter nodosus VCS1703A] Length = 232 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 19/227 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E +NL+ LA K G + K + R + + L ++ Sbjct: 3 LASNVKILRELNNLSQDQLAEKIGKSQAAIQKIEAGLT---LRPRFLQDLANALGVSSID 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------GFFDSGVFPTGNK----- 114 + + E + S FF F G Sbjct: 60 LEYKDFEKELKKQAIESDIGTMGKFRLWSSNDPLPEDEYAYLPFFKDVEFQGGTGCCEMQ 119 Query: 115 -WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 +N +P +S + Q SM P+ KG L +N A V + Sbjct: 120 DYNGFRLPFAKSTLHRYGVPLDQAFCVTLTGNSMEPVIPKGSTLGINKADTVLKEGDIYA 179 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARIL 219 + K L I + S N Y + V +IE I R+ Sbjct: 180 IRQDDLFRVKRLYHAPNGMIRISSFNQEEYKDELVRPENIEIIGRVF 226 >gi|320008142|gb|ADW02992.1| transcriptional repressor, LexA family [Streptomyces flavogriseus ATCC 33331] Length = 265 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 64 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 113 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T + P + P + + + +P Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM GD + + GD + G+ Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLD-GEA 223 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 224 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 259 >gi|315929228|gb|EFV08447.1| helix-turn-helix family protein [Campylobacter jejuni subsp. jejuni 305] Length = 236 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 31/231 (13%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + E T + L+ K+G+ ++ K + ++ + ++ KI +A N + Sbjct: 6 RMKEYREYFGWTQTDLSEKSGVSISTIKKYEAGSVD----NFTYGNLKKIASAFNLSPAS 61 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFP----------------PSGSGGFFDSGVFPTGNKW 115 + SD T + + + FF++ G+ Sbjct: 62 FISENMSDNSPTISNKICPTNVKNCPTSNVILENFTQTLNDDMINIPFFENVRASAGSGA 121 Query: 116 NTVGVPEIRSPHNGIYAIQT-------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + Q SM P + L++ G Sbjct: 122 YNDEESTQALGLSKSFLRECFGLYSFINLSVILGQGDSMTPTLPENCYLLIQQGEVAE-G 180 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + ++ K L R + L+S N Y +E + E + R++ Sbjct: 181 EICVTRI-EDELYVKRLQKRP--KLKLLSDNKAYEPINLEGENFEILGRVV 228 >gi|311105237|ref|YP_003978090.1| hypothetical protein AXYL_02046 [Achromobacter xylosoxidans A8] gi|310759926|gb|ADP15375.1| helix-turn-helix family protein 5 [Achromobacter xylosoxidans A8] Length = 245 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 72/221 (32%), Gaps = 25/221 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + T LA + G D + ++ +R + S E + KI AA Sbjct: 31 LGDNIRQRRKALGWTILDLANRIGSDVGNVSRLERG-----KQGYSDEILAKIAAALGCP 85 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L + + +G + V Sbjct: 86 VGELFLGVEKESNVELTALGSRRIPVLSYVQAGALT----------ESVVPYTNPDDWLL 135 Query: 129 GIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + + SM + +GD+++++ +++ GD ++ K + K Sbjct: 136 TDLDLSRSAFALRIKGLSMYSPQSEESFNEGDLVVIDPSVEPLPGDFVVAKNGDHEATFK 195 Query: 184 VLISRRGRS-----IDLMSLNCCYPVDTVEMSDIEWIARIL 219 R +L+ LN YP + + ++ I ++ Sbjct: 196 KYRPRGVNEKGVVVFELVPLNPDYPSVRSDYTQVQIIGTMV 236 >gi|330836793|ref|YP_004411434.1| putative phage repressor [Spirochaeta coccoides DSM 17374] gi|329748696|gb|AEC02052.1| putative phage repressor [Spirochaeta coccoides DSM 17374] Length = 232 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 15/226 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN-------RWPSTESIFKI 61 + + + + L+ LA++ GL +++ K + G R + + Sbjct: 2 VGDRLKQARNEMRLSQMQLAKELGLAQSTYAKYELGGAIPEPVMQFLAQRQFNLHWLITG 61 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-- 119 + L T + + + + G + Sbjct: 62 QGSMYLDGSGTDTLEPIAASTFITPKGKTYAVTIAEGVVSVPILTQRVSAGPGQEFLPAD 121 Query: 120 VPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + E R P + + + + SM + D ++ + GD + + Sbjct: 122 ITEERLPVLERFVRMYPKESLFAAEVRGDSMT-GIQLFDADLVIFVREQVEGDGIYVLSV 180 Query: 177 TGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220 G++ K + + + + S N Y VE +E + +++ W Sbjct: 181 DGEVFVKRVEFDPFDKKLTIRSENERYAPREVEADRVELLGKVVGW 226 >gi|306844008|ref|ZP_07476603.1| LexA repressor [Brucella sp. BO1] gi|306275763|gb|EFM57487.1| LexA repressor [Brucella sp. BO1] Length = 240 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDG-------------RTTEKKEKEIPLLYFPPSGSGGFFD 105 + L L + + Sbjct: 61 ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVAPVQPVRPAPAPQNSEAPATVSVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GD +I+ Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K + SI L + N Y + +++ Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234 >gi|222148888|ref|YP_002549845.1| LexA repressor [Agrobacterium vitis S4] gi|254809084|sp|B9JX59|LEXA_AGRVS RecName: Full=LexA repressor gi|221735874|gb|ACM36837.1| LexA repressor [Agrobacterium vitis S4] Length = 239 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 65/233 (27%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + +++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILA--ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------GFFDSG 107 + L E + + + + + L P + + G Sbjct: 61 ARALEVIKLPEAMTSSIPPRRTGFSPSVIEGSRGKLQAVPSAPAKQVEEVRNSSSIPVMG 120 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166 G + + + + + SM GD +I+ +A N Sbjct: 121 RIAAGVPISAIQNNTHDISVPMEMLGSGEHYALEVKGDSMIEAGILDGDTVIIRNATTAN 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K R SI L + N Y ++ +++ Sbjct: 181 PGDIVVALVDDEEATLKRFRRRGA-SIALEAANPAYETRIFGPDRVKIQGKLV 232 >gi|145641568|ref|ZP_01797145.1| predicted transcriptional regulator [Haemophilus influenzae R3021] gi|145273615|gb|EDK13484.1| predicted transcriptional regulator [Haemophilus influenzae 22.4-21] Length = 231 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 11/227 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-- 64 + E + + ++ LA AG + + + KI Sbjct: 2 NTLAERLQLVMDKMGKNQVELAALAGTSQVTISNILNGVTKSPRNGLQIAKALKISPEWL 61 Query: 65 -TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WN 116 + + T + F+ GN +N Sbjct: 62 LNGTGEMAQTQIESNVAETGSFDLWDRNTPLNDDEVEVPFYKDIRLAAGNGFADDIADYN 121 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + +S SM P+ G + ++ + ++ Sbjct: 122 NFKLRFSKSTLRKQGVQYENAVCVTADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINH 181 Query: 177 TGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222 G + K+L + + + S N +P +T ++ DI + ++ W S Sbjct: 182 GGLLRIKLLYNMPNEQVKIRSYNSEEHPDETADLKDISVLGKVFWYS 228 >gi|159044352|ref|YP_001533146.1| LexA repressor [Dinoroseobacter shibae DFL 12] gi|189046535|sp|A8LMK0|LEXA_DINSH RecName: Full=LexA repressor gi|157912112|gb|ABV93545.1| lexA repressor [Dinoroseobacter shibae DFL 12] Length = 231 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 14/229 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--------W 52 M + ++ E I + +R + PS K LD S + R R Sbjct: 1 MLTRKQIELLEFIHKRLQRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHK 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ A ++ DG + +P+ + G G Sbjct: 61 ARAIEIVKLPEALMGSMQGGFAPQVIDGDRLDPPVGAMPV---SGIHAVELPVMGKIAAG 117 Query: 113 NKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + G Q + + + SM+ GDI+++ GD Sbjct: 118 TPIEAISEVSHTVAVPGQMMRQDAEHYALEVKGDSMINAGINNGDIVVIRETSVAESGDI 177 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K L +RG +I L + N Y + +++ Sbjct: 178 VVALVDGHEATLKTL-RKRGNAIALEAANPAYETRVYPAEMVRVQGKLV 225 >gi|312195032|ref|YP_004015093.1| LexA family transcriptional regulator [Frankia sp. EuI1c] gi|311226368|gb|ADP79223.1| transcriptional repressor, LexA family [Frankia sp. EuI1c] Length = 278 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 60/234 (25%), Gaps = 23/234 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 +K+ E I ER PS + GL TS + +E + R P+ + Sbjct: 42 QRKVLEVIRDAVERRGYPPSVREIGEAVGLTSTSSVAHQLKMLEDKGFLRRDPNRPRAIE 101 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG------------- 107 ++ + E + L D + + D Sbjct: 102 VVTSEGEAPIRPLPKTRPDLAAGKGRTPLRVHTLGSDDDVRADDDENAQLTAATAYLPLV 161 Query: 108 -VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165 G E P + + SM+ GD++ + Sbjct: 162 GRIAAGGPILAEQAVEDVLPLPREIVGEGTLFLLRVVGESMINAAICDGDLVAVRQQPVA 221 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ + G+ K + L N + D + R++ Sbjct: 222 ENGEIVAAMID-GEATVKRFRRHDDGHVWLQPENPAFHDI--AGDDATILGRVV 272 >gi|78357023|ref|YP_388472.1| transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219428|gb|ABB38777.1| transcriptional regulator, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 219 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 23/230 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + T LAR G++ ++ +++K+ + K Sbjct: 1 MEKLSFDTFFRRVKESTEIN--TQQALARALGVNRSAVSQAKQREKVPEK------WVLK 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + L S + G VG Sbjct: 53 IARMFALSPDWLESGSGSH------ALRTAASDMADGIFIPVPKVEAKLSAGGGSLEVGA 106 Query: 121 PEI-----RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 S SM P GD ++++ Q + Sbjct: 107 TATGEHLFHSTWLRRKGNPADMVLMDVVGDSMEPEIFAGDTVLVDQGNQTLRNGAIFAMG 166 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILWAS 222 ++ K + S + L+S N Y ++ +IE I +++W S Sbjct: 167 VDDSVLVKRVQSAPEG-LVLLSENPSYSPVLLQGDEIETVRVIGKVIWIS 215 >gi|91224299|ref|ZP_01259561.1| putative cI prophage repressor protein [Vibrio alginolyticus 12G01] gi|91190641|gb|EAS76908.1| putative cI prophage repressor protein [Vibrio alginolyticus 12G01] Length = 209 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 17/211 (8%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 + +T + LA G+ ++ +NR PS E++ I+ T Sbjct: 1 MKEVGITQNALAEMMGVSQSAIAHWLS-----KNREPSIENVAAIMKCVGLTHMT--LDS 53 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAI 133 + + L P+ F G + + EI + Sbjct: 54 EGFIDYPDDSIANVTKLDIQPTYQKSFPVLSSVQAGQWHEAIEPYSIEEISEWYPTTERC 113 Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISR 188 + Q SM + +G ++++++ + G ++ + K I Sbjct: 114 SERCFWLTVQGDSMTSPTGVSFPEGTMVLVDTEVDAENGKLVVAKLTDVNEATFKKFIVD 173 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ L +LN +P+ + + + I ++ Sbjct: 174 SGQKY-LKALNPAFPILPINGN-CKIIGVVI 202 >gi|220904093|ref|YP_002479405.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868392|gb|ACL48727.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 229 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 19/223 (8%) Query: 11 EAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + R+ + N + + LAR G+ P S + +++ G + AAT Sbjct: 9 KTLHRLMQAMNASNDAELARALGITPQSISGARKRGEVPPA------WVQASAAATGVNA 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTV-GVPEIRSPH 127 L + + + + G V E Sbjct: 63 HWLFFGSGPMRLPEAAEGELPSMHGDCEADLIHVPLAEARLSAGTGSLEVSERSEDSYAF 122 Query: 128 NGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 G + + + SM+P D+++L+ RL I K Sbjct: 123 RGDFLRRKGNPRRMVLMRVSGDSMVPEIFDNDLVLLDKGQTEISPGRLYAVGFEDAIYIK 182 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221 + I L S+N YP +++ I R+LW+ Sbjct: 183 RIDKVP-GKIILHSVNPAYPPVSLDLRGDLADQFRVIGRVLWS 224 >gi|158338892|ref|YP_001520069.1| S24 family peptidase [Acaryochloris marina MBIC11017] gi|158309133|gb|ABW30750.1| peptidase, S24 family [Acaryochloris marina MBIC11017] Length = 227 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 10/202 (4%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + LA+ G++ + K RN E + + L E + Sbjct: 27 NATHLAKVVGVNDRTIRKWMAGTEPARN---YLELLAEKLEVNIEWLVLGRGPIRRADGG 83 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 LY +G+G + + + + Sbjct: 84 IGDGTYVQIPLYDVRAGAGEGMIAEDK--EQIEELMAFSRSWIRSE-LRTSPAHLSLIHV 140 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P R GD+++++ D + + R G + K L G+ + ++S N Y Sbjct: 141 SGDSMEPTLRPGDVVLVDQHQAEGGTDGVYVLRRDGHLQIKRLHWLSGKVLKIISDNPIY 200 Query: 203 PVDTVEM----SDIEWIARILW 220 V++ + + I R++W Sbjct: 201 QPIEVDLSQLTEEFQIIGRVIW 222 >gi|331701909|ref|YP_004398868.1| phage repressor like XRE family transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129252|gb|AEB73805.1| phage repressor like transcriptional regulator, XRE family [Lactobacillus buchneri NRRL B-30929] Length = 237 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 27/234 (11%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + NLT + + G+ ++ K + IE R ++ K L + I Sbjct: 4 NLRNRRKELNLTLEEVGKMVGVGKSTIRKWETGYIENMKRD-KIIALSKALKVSPMDIID 62 Query: 72 LLDLPFSDGRTTE-------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + ++ + + + V N V +P R Sbjct: 63 PNKEISNPMIDKIEEISIQLHPSRQEKVYNYASDQLDEQNNEKVTSMFNHKPLVDIPYGR 122 Query: 125 SPHNGIYAIQTQ-------------------DTRHKTQDTSMLPLYRKGDILILNSAIQV 165 S G D SM PL +KG + ++ +V Sbjct: 123 STAAGSPINGEDQDTQLIHKLIAGEKVPAGADELITVDGDSMEPLLKKGSQVFIHYQPEV 182 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ R + K ++ L S+N Y + ++ I +++ Sbjct: 183 ENGEIAIVHIRDVGVTCKKFYVNEDNTVTLKSINEAYDDMVFDCDEVNVIGKVI 236 >gi|327189236|gb|EGE56415.1| transcriptional regulator repressor protein LexA protein [Rhizobium etli CNPAF512] Length = 239 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107 + K+ A + ++ S S G Sbjct: 61 ARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVAAPAAAKPIADNGNSVSVPVMG 120 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 G + + + + + SM+ GD +I+ + + Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232 >gi|320659907|gb|EFX27453.1| repressor protein CI [Escherichia coli O55:H7 str. USDA 5905] Length = 217 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS I + Sbjct: 8 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 62 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 +P P + + S Sbjct: 63 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTQKA--- 117 Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P + G +++++ V GD + + + K LI Sbjct: 118 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 177 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 178 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 210 >gi|190891622|ref|YP_001978164.1| transcriptional regulator repressor protein LexA protein [Rhizobium etli CIAT 652] gi|229621743|sp|B3PYQ7|LEXA_RHIE6 RecName: Full=LexA repressor gi|190696901|gb|ACE90986.1| transcriptional regulator repressor protein LexA protein [Rhizobium etli CIAT 652] Length = 239 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107 + K+ A + ++ S S G Sbjct: 61 ARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPPAVAAPAAAKPIADNGNSVSVPVMG 120 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 G + + + + + SM+ GD +I+ + + Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232 >gi|182678402|ref|YP_001832548.1| LexA repressor [Beijerinckia indica subsp. indica ATCC 9039] gi|229621196|sp|B2IKM0|LEXA_BEII9 RecName: Full=LexA repressor gi|182634285|gb|ACB95059.1| transcriptional repressor, LexA family [Beijerinckia indica subsp. indica ATCC 9039] Length = 237 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 58/232 (25%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + ++ I + + PS K LD S + R + R P+ Sbjct: 1 MLTKKQSELLRFIHERLKETGVPPSFDEMKEALDLRSKSGIHRLVMALEERGFIRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTE-------KKEKEIPLLYFPPSGSGGFFDSGV 108 +++ + + + + + G Sbjct: 61 ARALEVVRLPDAATPPVPPHGRKFSPSVIEGDLGRVRPHTPHTDDEDSELTTVAIPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G + + + + + SM+ D +I+ Sbjct: 121 IAAGTPISALQHRSHTIGLPMDMLPAGEHYALEVRGDSMIDAGILDADTVIIRRQDNAEN 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K L R SI L N Y + +++ Sbjct: 181 GDIVVALIDDEEATLKRLRRRGA-SIALEPANSAYETRIFGPDRVRIQGKLV 231 >gi|163731991|ref|ZP_02139437.1| LexA repressor [Roseobacter litoralis Och 149] gi|161394289|gb|EDQ18612.1| LexA repressor [Roseobacter litoralis Och 149] Length = 233 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 65/229 (28%), Gaps = 12/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ A +G + + + G G Sbjct: 61 ARAIEIVKLPEALGGAAQGRFTPRVIEGDKPDAPLPAGAQA-VSSADAVSLPLVGRIAAG 119 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + G + + + + SM+ GD++++ + GD Sbjct: 120 LPIEAINQNSASVAVPGQMLSGKGDHYALEVKGDSMIDAGINDGDVVVIRETSAADNGDI 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + R G SI L + N Y ++ +++ Sbjct: 180 VVALIEDHEATLKRYMRR-GSSIALEAANPAYETRVFTEDKVKVQGKLV 227 >gi|152978883|ref|YP_001344512.1| putative phage repressor [Actinobacillus succinogenes 130Z] gi|150840606|gb|ABR74577.1| putative phage repressor [Actinobacillus succinogenes 130Z] Length = 228 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 34/233 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +++ A ++ L + LA +G + + + + + Sbjct: 1 MKTL-PERLLFA----MQQKGLNQAELASMSGTSQVTISNILNGVTDVPRKGL------E 49 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I A + ++ LL + K K ++ G+ + Sbjct: 50 IANALDVSLNWLLTGVEDSVTVSTKSGKNDSIIMT--------LLDNRLAAGDGVINLDY 101 Query: 121 PEIRSPHNGIYAIQTQDTRHK---------TQDTSMLP------LYRKGDILILNSAIQV 165 P+ + R K SM + GD++ ++++IQ Sbjct: 102 PDTIRSIEFSAEKFMELFRRKTANNLSMAIIDGNSMYDPNNEEISLKHGDVVFIDTSIQE 161 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 D + G K L G + ++S N Y + +E +E I I Sbjct: 162 FKNDGIYAFVFEGQARIKRLQYMSGYRLKVISDNPTYETEILEKEQVEQIHFI 214 >gi|329726858|gb|EGG63318.1| peptidase S24-like protein [Staphylococcus epidermidis VCU144] Length = 208 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 72/225 (32%), Gaps = 24/225 (10%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +K++ I R+ + +N+ L+ + T+ + + R E + Sbjct: 1 MLGNKQVMAKNISRLMKENNIDRKKLSNDLKVKYTTLSDWIN--AKTYPRIDKIELLADY 58 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T + + + + + P S ++ N + + Sbjct: 59 FNVTKADLVEDKEKQVLETLP----------VKKIPVVSKISAGLPIYSEENLIDYIYF- 107 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++ K +M +++ GDI+++ V G ++ + Sbjct: 108 -----ATNKLNSDKEEFGLKVSGDNMDKIFQDGDIVVVEKDSIVENGQLGVVMINGYNAT 162 Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDTV-EMSDIEWIARILWASQ 223 K + G + L+ N + + +++ I R++ ASQ Sbjct: 163 VKRI-RYNGDQVILIPESNNTNHYPQVYGKNDEVKIIGRVV-ASQ 205 >gi|302866051|ref|YP_003834688.1| LexA repressor [Micromonospora aurantiaca ATCC 27029] gi|315502610|ref|YP_004081497.1| transcriptional repressor, lexa family [Micromonospora sp. L5] gi|302568910|gb|ADL45112.1| LexA repressor [Micromonospora aurantiaca ATCC 27029] gi|315409229|gb|ADU07346.1| transcriptional repressor, LexA family [Micromonospora sp. L5] Length = 260 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 29/219 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 ++I E I ERH PS + G + P+S + K +G R Sbjct: 60 QRRILEFIRNWVERHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLRR--------- 110 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + +D+ E + P + P + + +P Sbjct: 111 ----DPNRPRAVDVRAPGEADDEAARAQRPAPAYVPMLGRIAAGGPILAEQAVEDIFPLP 166 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + + SML GD +++ GD + G+ Sbjct: 167 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPNAEVGDIVAAMLD-GEA 218 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + LM N + D + R++ Sbjct: 219 TVKTYRRR-DGHVWLMPQNPAFDPI--PGDDATIMGRVV 254 >gi|239906085|ref|YP_002952824.1| hypothetical protein DMR_14470 [Desulfovibrio magneticus RS-1] gi|239795949|dbj|BAH74938.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 269 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 31/239 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--------RNRWPSTESI 58 ++I+ + +A T + LA+ G+ + + +KR + S + + Sbjct: 32 QEIFTRLK-LATGAG-TDTELAKALGIKQGAVSAAKRSLQIPPVWIAKVSKGFSVSADWL 89 Query: 59 -----------FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + + +T + L+ + S Sbjct: 90 FYGTGPMERGGAAVASGPGQTTGAIPADAPPWMAPEAAPSMGYTLVPKVQARLAAGSGSL 149 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 G G + SM P+ D ++++ + Sbjct: 150 ET-EGEVIGYYAFKTDFLRRKGR---PQKMVLMDVAGDSMEPILLDRDTVLIDESQNAII 205 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221 L ++ K L + L S N Y V+ + + I R++W+ Sbjct: 206 SGGLFAVGVEQEVFVKYLDRIP-GKLVLRSKNSDYQPIEVDMNGDLAASVRIIGRVVWS 263 >gi|302525524|ref|ZP_07277866.1| LexA repressor [Streptomyces sp. AA4] gi|302434419|gb|EFL06235.1| LexA repressor [Streptomyces sp. AA4] Length = 254 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 61/217 (28%), Gaps = 21/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++ + I R PS + GL TS + S + R + ++ Sbjct: 50 QQQVLDVIRTWVSRFGYPPSVREIGEAVGLTSTS-SVSHQLRALQRKGYLRRDANRPRAV 108 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + D + + K +PL+ +G + +P Sbjct: 109 GVLASTDDNPMGIEMDQQPSVPKAAYVPLVGRIAAGGPV------LAEQAVEDVFPLPRE 162 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + SM+ GD +++ GD + G+ Sbjct: 163 IVG-------EGELFLLSVTGDSMVDAAITDGDWVVVRQQPAAENGDIVAAMID-GEATV 214 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + LM N Y D + +++ Sbjct: 215 KTFKRK-DGHVWLMPHNEAYEPI--PGDDASILGKVV 248 >gi|256825541|ref|YP_003149501.1| SOS-response transcriptional repressor, LexA [Kytococcus sedentarius DSM 20547] gi|256688934|gb|ACV06736.1| SOS-response transcriptional repressor, LexA [Kytococcus sedentarius DSM 20547] Length = 233 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 18/219 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 ++ E I R + PS +A + L S + + ++ + R P+ + Sbjct: 20 QTRVLEVIRRSIDERGYPPSMREIAEQVELASASSVQHQLNALQRKGYIRRDPNRPRALE 79 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL A L +E + P + P + + + + Sbjct: 80 ILDAAWPGDRGYRKLDEETWDPSEAADNHPP-ASYVPVVGQIAAGGPILAEEHIEDVFPL 138 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + SM+ GD +++ GD + + Sbjct: 139 PRQIVG-------DGELFLLRVKGDSMVDAAICDGDWVVVRRQQAAINGDIVAAMLD-DE 190 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + + I L N + + +D + ++ Sbjct: 191 ATVKTYKKVKNQ-IWLQPHNPLFDPI--DGNDATILGKV 226 >gi|209885431|ref|YP_002289288.1| LexA repressor [Oligotropha carboxidovorans OM5] gi|226694236|sp|B6JG34|LEXA_OLICO RecName: Full=LexA repressor gi|209873627|gb|ACI93423.1| LexA repressor [Oligotropha carboxidovorans OM5] Length = 232 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 58/227 (25%), Gaps = 9/227 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I+ + + PS K LD S + R R + Sbjct: 1 MLTRKQYELLRFINERLKESGIPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLANR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + L + + + G G Sbjct: 61 ARAIEVIKLPEPALGSGGRRGFTPSVIEGNLGKARGPASFDESGEQPVAVPVMGRIAAGT 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + SM GD+ ++ + + GD ++ Sbjct: 121 PIEALQTRSHTISVPPDMLGAGEHYALEVRGDSMVEAGILDGDMALIQRSENADTGDIVV 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R SI L N Y V + + + +++ Sbjct: 181 ALIDEEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVRIQGKLI 226 >gi|168750476|ref|ZP_02775498.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|168757678|ref|ZP_02782685.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|168783674|ref|ZP_02808681.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|168802673|ref|ZP_02827680.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|195937964|ref|ZP_03083346.1| phage-related repressor protein [Escherichia coli O157:H7 str. EC4024] gi|208819582|ref|ZP_03259902.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|188015290|gb|EDU53412.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188999040|gb|EDU68026.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355373|gb|EDU73792.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189375389|gb|EDU93805.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208739705|gb|EDZ87387.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] Length = 229 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + LT L G+ + K + T I +I A Sbjct: 7 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + +T + + G E+ Sbjct: 61 WLSSGVGNMSDSTVQPIQPTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 117 Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM GD+L ++ ++ GD + Sbjct: 118 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 177 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 178 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 218 >gi|113461549|ref|YP_719618.1| repressor protein [Haemophilus somnus 129PT] gi|112823592|gb|ABI25681.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 211 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 17/208 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + NL +A + R P+ + K+L AT Sbjct: 7 EFVRDRMSEKNLKQEDIAEAIERTQGAVGHWLTG-----RRSPNFMEVAKMLNATGTDQV 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + I + F G T +V + EI + I Sbjct: 62 ------------ILNSDGTIEDIEFIGIPKKGLVKVIGEATMGTDGSVDIEEIHVGYIDI 109 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + + + + +SM P G+ +++ + GD + I+ + G + K+L ++ Sbjct: 110 FTTDPKAFCLRVKGSSMEPRIHSGEFVLVEPQSPFSNGDDVFIRTKDGKNMIKILDYQKD 169 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 S+N + + + ++E + + Sbjct: 170 GEYRFSSINNDHKPFNLAIDEVELVYYV 197 >gi|322507551|gb|ADX03005.1| Putative phage repressor [Acinetobacter baumannii 1656-2] Length = 224 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 62/217 (28%), Gaps = 8/217 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I R LT A+ AG+ + ++ S S + T Sbjct: 9 IGLRIKEERTRLGLTQPDFAQIAGISKRTLIDWEKDLSSPNAVQLSALSQAGVDVNYIIT 68 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 ++L + S G N + Sbjct: 69 GNKVLSSIGDLPDGFDGFSLIPVHEDVVISAGHGSVVCAGDNPSN---YMAFRNDWIRSR 125 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 G + + SM P + ++ N+A + + K + + Sbjct: 126 GFSVKDLKVFITR--GDSMEPTIADKEPILTNTAEVTPQDGHIYVIRSGEMTWVKRIQRQ 183 Query: 189 RGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222 ++ L+S N YP +++ D+E I +++ +S Sbjct: 184 LDNTLLLISDNKAYPPMKLDLETAHDVEVIGKVVNSS 220 >gi|295096873|emb|CBK85963.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 192 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 21/198 (10%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQLLDLPFSDG 80 +T +A AG+ S + GR R P + + K L + L + Sbjct: 1 MTQVEVANSAGVSQQSIESIE----SGRTRKPRNLLDLAKALKCSP----DWLLNGKNIM 52 Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140 E + IP+L + +G TG+ + V + Sbjct: 53 PLAEISTRRIPVLSYVQAGELTEAKDVTDLTGD-FEYVLADSD---------VPATCFAL 102 Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS--IDLMSL 198 + SM P +++GDI+I++ + G+ ++ K + K +L+ L Sbjct: 103 RIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNGGHEATFKKYRPLGVGINDFELVPL 162 Query: 199 NCCYPVDTVEMSDIEWIA 216 N YPV ++ I Sbjct: 163 NPDYPVLRSADMKLQIIG 180 >gi|218558038|ref|YP_002390951.1| Repressor protein CI from phage origin [Escherichia coli S88] gi|218364807|emb|CAR02497.1| Repressor protein CI from phage origin [Escherichia coli S88] Length = 233 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS I + Sbjct: 24 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 78 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 +P P + + S Sbjct: 79 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 133 Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P + G +++++ V GD + + + K LI Sbjct: 134 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 193 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 194 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 226 >gi|209407392|emb|CAQ82008.1| repressor protein CI [Enterobacteria phage 2851] Length = 219 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS I + Sbjct: 10 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 +P P + + S Sbjct: 65 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 119 Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P + G +++++ V GD + + + K LI Sbjct: 120 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 179 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 180 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 212 >gi|117623333|ref|YP_852246.1| putative CI repressor of bacteriophage [Escherichia coli APEC O1] gi|168752471|ref|ZP_02777493.1| CI protein [Escherichia coli O157:H7 str. EC4113] gi|187776111|ref|ZP_02800576.2| CI protein [Escherichia coli O157:H7 str. EC4196] gi|189010451|ref|ZP_02807272.2| CI protein [Escherichia coli O157:H7 str. EC4076] gi|189402456|ref|ZP_02782534.2| CI protein [Escherichia coli O157:H7 str. EC4401] gi|189404513|ref|ZP_02790006.2| CI protein [Escherichia coli O157:H7 str. EC4501] gi|189405171|ref|ZP_02813660.2| CI protein [Escherichia coli O157:H7 str. EC869] gi|189405760|ref|ZP_02824140.2| CI protein [Escherichia coli O157:H7 str. EC508] gi|208809661|ref|ZP_03251998.1| CI protein [Escherichia coli O157:H7 str. EC4206] gi|208817192|ref|ZP_03258284.1| CI protein [Escherichia coli O157:H7 str. EC4045] gi|208820684|ref|ZP_03261004.1| CI protein [Escherichia coli O157:H7 str. EC4042] gi|209400501|ref|YP_002271236.1| repressor protein [Escherichia coli O157:H7 str. EC4115] gi|209427751|ref|YP_002274162.1| putative bacteriophage CI repressor [Enterobacteria phage YYZ-2008] gi|217328107|ref|ZP_03444189.1| repressor protein [Escherichia coli O157:H7 str. TW14588] gi|227886483|ref|ZP_04004288.1| repressor protein CI [Escherichia coli 83972] gi|237706857|ref|ZP_04537338.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|254793774|ref|YP_003078611.1| repressor protein CI [Escherichia coli O157:H7 str. TW14359] gi|300935255|ref|ZP_07150273.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] gi|300975627|ref|ZP_07173106.1| peptidase S24-like domain protein [Escherichia coli MS 45-1] gi|300982354|ref|ZP_07176052.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|301046509|ref|ZP_07193662.1| peptidase S24-like domain protein [Escherichia coli MS 185-1] gi|302393138|ref|YP_003828968.1| CI protein [Stx2 converting phage II] gi|32128133|dbj|BAC77937.1| CI protein [Stx1 converting phage] gi|32128300|dbj|BAC78103.1| CI protein [Stx2 converting phage II] gi|115512457|gb|ABJ00532.1| putative CI repressor of bacteriophage [Escherichia coli APEC O1] gi|187768994|gb|EDU32838.1| CI protein [Escherichia coli O157:H7 str. EC4196] gi|188013689|gb|EDU51811.1| CI protein [Escherichia coli O157:H7 str. EC4113] gi|189000092|gb|EDU69078.1| CI protein [Escherichia coli O157:H7 str. EC4076] gi|189355469|gb|EDU73888.1| CI protein [Escherichia coli O157:H7 str. EC4401] gi|189365099|gb|EDU83515.1| CI protein [Escherichia coli O157:H7 str. EC4501] gi|189371589|gb|EDU90005.1| CI protein [Escherichia coli O157:H7 str. EC869] gi|189378456|gb|EDU96872.1| CI protein [Escherichia coli O157:H7 str. EC508] gi|208729462|gb|EDZ79063.1| CI protein [Escherichia coli O157:H7 str. EC4206] gi|208730811|gb|EDZ79501.1| CI protein [Escherichia coli O157:H7 str. EC4045] gi|208740807|gb|EDZ88489.1| CI protein [Escherichia coli O157:H7 str. EC4042] gi|208970819|gb|ACI32363.1| putative bacteriophage CI repressor [Enterobacteria phage YYZ-2008] gi|209161901|gb|ACI39334.1| repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217318534|gb|EEC26960.1| repressor protein [Escherichia coli O157:H7 str. TW14588] gi|226898067|gb|EEH84326.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227836687|gb|EEJ47153.1| repressor protein CI [Escherichia coli 83972] gi|254593174|gb|ACT72535.1| repressor protein CI [Escherichia coli O157:H7 str. TW14359] gi|300301529|gb|EFJ57914.1| peptidase S24-like domain protein [Escherichia coli MS 185-1] gi|300307191|gb|EFJ61711.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|300410290|gb|EFJ93828.1| peptidase S24-like domain protein [Escherichia coli MS 45-1] gi|300459507|gb|EFK23000.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] gi|315287509|gb|EFU46920.1| peptidase S24-like domain protein [Escherichia coli MS 110-3] gi|315293071|gb|EFU52423.1| peptidase S24-like domain protein [Escherichia coli MS 153-1] gi|323957980|gb|EGB53692.1| peptidase S24 [Escherichia coli H263] Length = 231 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS I + Sbjct: 22 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 76 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 +P P + + S Sbjct: 77 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 131 Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P + G +++++ V GD + + + K LI Sbjct: 132 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 191 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 192 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 224 >gi|91210315|ref|YP_540301.1| putative CI repressor of bacteriophage [Escherichia coli UTI89] gi|195939328|ref|ZP_03084710.1| putative CI repressor of bacteriophage [Escherichia coli O157:H7 str. EC4024] gi|209447145|ref|YP_002274230.1| repressor [Stx2-converting phage 1717] gi|215486128|ref|YP_002328559.1| predicted repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|261225735|ref|ZP_05940016.1| repressor protein CI [Escherichia coli O157:H7 str. FRIK2000] gi|261258459|ref|ZP_05950992.1| repressor protein CI [Escherichia coli O157:H7 str. FRIK966] gi|291281724|ref|YP_003498542.1| CI protein [Escherichia coli O55:H7 str. CB9615] gi|302861176|ref|YP_003848877.1| CI repressor protein [Stx1 converting phage] gi|23343453|emb|CAC95084.1| repressor [Enterobacteria phage Nil2] gi|91071889|gb|ABE06770.1| putative CI repressor of bacteriophage [Escherichia coli UTI89] gi|209361124|gb|ACI43117.1| repressor [Stx2-converting phage 1717] gi|215264200|emb|CAS08544.1| predicted repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|290761597|gb|ADD55558.1| CI protein [Escherichia coli O55:H7 str. CB9615] gi|294489683|gb|ADE88439.1| peptidase, S24 (LexA) family [Escherichia coli IHE3034] gi|307553159|gb|ADN45934.1| putative CI repressor of bacteriophage [Escherichia coli ABU 83972] gi|307627374|gb|ADN71678.1| repressor protein CI [Escherichia coli UM146] gi|320637900|gb|EFX07682.1| repressor protein CI [Escherichia coli O157:H7 str. G5101] gi|320643308|gb|EFX12497.1| repressor protein CI [Escherichia coli O157:H- str. 493-89] gi|320648651|gb|EFX17292.1| repressor protein CI [Escherichia coli O157:H- str. H 2687] gi|320654244|gb|EFX22302.1| repressor protein CI [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320664729|gb|EFX31869.1| repressor protein CI [Escherichia coli O157:H7 str. LSU-61] gi|323953159|gb|EGB49025.1| peptidase S24 [Escherichia coli H252] Length = 217 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS I + Sbjct: 8 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 62 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 +P P + + S Sbjct: 63 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 117 Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P + G +++++ V GD + + + K LI Sbjct: 118 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 177 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 178 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 210 >gi|221638398|ref|YP_002524660.1| LexA repressor [Rhodobacter sphaeroides KD131] gi|221159179|gb|ACM00159.1| LexA repressor [Rhodobacter sphaeroides KD131] Length = 222 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 5/216 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESIFKILAAT 65 ++ + I +R + PS K LD S + R R + + Sbjct: 2 ELLDFIKTRMDRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHRARAIEIV 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIR 124 + + +G+ G G + G P+ Sbjct: 62 KLPEAMERAGFSARAAKAAAAPLPKGAVTVETAGALDLPLMGRIAAGLPIEAINGGPQSV 121 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + + + Q + + SM+ GDI+++ + GD ++ + K Sbjct: 122 TVPGMMLSGRGQHYALEVKGDSMIAAGINDGDIVVIREQQTADNGDIVVALVADHEATLK 181 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 R G I L N Y ++ R++ Sbjct: 182 RYRRR-GGMIALEPANDSYETQVYPEQLVKVQGRLV 216 >gi|218463028|ref|ZP_03503119.1| LexA repressor [Rhizobium etli Kim 5] Length = 239 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107 + K+ A + ++ S S G Sbjct: 61 ARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVAAPAAAKPIADNGSSVSVPVMG 120 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 G + + + + + SM+ GD +I+ + + Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232 >gi|308377110|ref|ZP_07441152.2| repressor lexA [Mycobacterium tuberculosis SUMu008] gi|308348968|gb|EFP37819.1| repressor lexA [Mycobacterium tuberculosis SUMu008] Length = 248 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + I PS + GL TS + +E + + + + Sbjct: 43 QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 102 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L + G + +P+L +G + +P Sbjct: 103 VRGADDAALPPVTEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 156 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K SM GD +++ + GD + G+ Sbjct: 157 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 208 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + LM N + +D + +++ Sbjct: 209 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 242 >gi|39998413|ref|NP_954364.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39985360|gb|AAR36714.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298507358|gb|ADI86081.1| helix-turn-helix transcriptional regulator, LexA-related [Geobacter sulfurreducens KN400] Length = 212 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 61/212 (28%), Gaps = 20/212 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ + +T A G+ + +R + PS + + Sbjct: 12 LGGRIRKLRQARGMTQKAFADSLGIVQGFLSSIERG-----RKVPSDTLVIALCRTYGVN 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + LL + + + P G + +P Sbjct: 67 VTWLLQGKGAMNAPPDGAGEGAGEGT---------PLLESVPQGFPED---IPGDVVQGR 114 Query: 129 GIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 ++ + M P R GD+++ + A G+ +L+ R G+ + + Sbjct: 115 IVFPGMPQGCYAVLAYGDFMAPTIRDGDMVLFDPARPAAPGEIVLVTNRWGEAILRRY-R 173 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + N Y + D I ++ Sbjct: 174 LKAGELLFSPDNAAYSPFHPDP-DTRIIGTVV 204 >gi|218889540|ref|YP_002438404.1| transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218769763|emb|CAW25523.1| transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 262 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 53/235 (22%), Gaps = 34/235 (14%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 LT S +A + T+ + + K + Sbjct: 25 RRELGLTQSSIAEAFRMSQTAISMYMNGSN-----ALNAAVAAKFSTILEVPVSSFSPRL 79 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---------------- 120 ++ K P+ + P + + Sbjct: 80 AAEIEGMAKAMHPKPVPDITDTLEPIHPWDDGTPIDDDEVEIPFYKEVEMAAGAGRNIEQ 139 Query: 121 -------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + + SM PL G + +++A + + Sbjct: 140 EIKGRKLRFSYATLRAAGVDPSAAICTRVGGNSMEPLISDGATIGVDTATKHITDGEIYA 199 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 + K + G + L S N YP + + I I + W S Sbjct: 200 IKHDDLLRVKFVYRLPGGGVRLRSYNRDEYPDEEYTPEEMRSQQISIIGWVFWWS 254 >gi|51596125|ref|YP_070316.1| prophage repressor protein [Yersinia pseudotuberculosis IP 32953] gi|51589407|emb|CAH21029.1| putative prophage repressor protein [Yersinia pseudotuberculosis IP 32953] Length = 228 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 62/219 (28%), Gaps = 10/219 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + NL+ LARK+G+ + +K++ + N +L Sbjct: 5 LAERVSERRSALNLSQEELARKSGVSRVAISKAELGLTKNFNGNTLFNIARALLCNPEWL 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRS 125 + + P S + GN + + EI Sbjct: 65 QTGKGNPELQSTSSANWDANVKENKDSHPLQSYEYPKISWVSAGNWSEAIEPYSLDEIDE 124 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180 + SM +G +++N ++ G ++ + Sbjct: 125 WVTTTKYAGHNAFWLDVKGDSMTSPVGLTIPEGMSILVNPDVEPTSGKLVIAKLTDGNEA 184 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I G L LN YP+ + + I ++ Sbjct: 185 TFKRYIEDAGNKY-LKPLNPQYPMIEINGN-CRIIGVVV 221 >gi|309701005|emb|CBJ00303.1| putative prophage repressor [Escherichia coli ETEC H10407] Length = 211 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 26/219 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 2 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALAKALQCSP 56 Query: 70 C----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L + PL+ + +G N S Sbjct: 57 DYLLKGEDSLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHK-RAIDNWYDTTVDCS 115 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180 + SM +G I++++ ++ G ++ + Sbjct: 116 E---------DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEA 166 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ GR L LN YP+ + + + I ++ Sbjct: 167 TFKKLVIDAGRRF-LKPLNPQYPMIEINGN-CKIIGVVV 203 >gi|326387883|ref|ZP_08209489.1| LexA repressor [Novosphingobium nitrogenifigens DSM 19370] gi|326207929|gb|EGD58740.1| LexA repressor [Novosphingobium nitrogenifigens DSM 19370] Length = 228 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 56/221 (25%), Gaps = 6/221 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I E ++PS K LD S + R R + Sbjct: 1 MLTRKQHELLTFIQNRLEESGISPSFEEMKDALDLKSKSGVHRLISALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNT 117 + L E P + + G G Sbjct: 61 ARALEVIREPETASPRGAARVATKPAPTPPPPPFVAPEAANDVIEIPLHGRIAAGAPIEA 120 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + P + + SM+ GD+ ++ G+ ++ R Sbjct: 121 LE-GSATLPVPAALLGPGEHYALEVSGDSMVDAGILDGDLALIRRTEVARDGEIVVALVR 179 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K L + I L N Y +D++ + Sbjct: 180 GEEATLKYLRREK-GMIRLDPANAAYDPQFYTPNDVQVQGK 219 >gi|254486471|ref|ZP_05099676.1| LexA repressor [Roseobacter sp. GAI101] gi|214043340|gb|EEB83978.1| LexA repressor [Roseobacter sp. GAI101] Length = 239 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 60/227 (26%), Gaps = 9/227 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + + I + +R + PS K LD S + R R Sbjct: 8 MLTKKQLDLLAFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 67 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG----SGGFFDSGVFPTGNK 114 + + ++ S G G Sbjct: 68 ARAIEVVKLPDSMGGLPGSGFTPRVIDGDRPDMPPPAAAQPVSNASFDIPMMGRIAAGVP 127 Query: 115 WNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + G + + + + + SM+ GD++++ + GD ++ Sbjct: 128 IEAISTMTHSVAVPGSMVSGRGEHYALEVKGDSMIDAGINDGDVVVIRETSVADNGDIVV 187 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K G SI L + N Y + ++ R++ Sbjct: 188 ALVEDHEATLKTFKRH-GSSIALEAANPAYETRVLPADKVKVQGRLV 233 >gi|114328257|ref|YP_745414.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] gi|114316431|gb|ABI62491.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] Length = 255 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 68/232 (29%), Gaps = 21/232 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF--KILAATN 66 + E + + + LA++AG T+ +K +R + P +L Sbjct: 19 VGERMRHARIQRGWSQDALAKEAGTSQTTIDKIERNLTQRSRALPRLAQCLGVDLLTLDP 78 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-------FDSGVFPTGNKWNTVG 119 + + ++ ++ + + G G Sbjct: 79 DYLGDYQPGTEAEAPPQSPRKLQGQVRIPAQPIPPPITGLSVRSVPVFGTAQGGALGATG 138 Query: 120 VPE-----IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 +P+ + G + SM P G ++ ++ D +++ Sbjct: 139 LPDSAQALDWARLPGPLTGIPGLFALYVEGDSMEPWVEHGHLIYIHPTRPAAPRDHVVVV 198 Query: 175 PRTGD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220 + G+ + K L+ R + L N ++ + I R++ W Sbjct: 199 VQDGEYDEPRALVKRLVRRTAGRLVLHQYNPA-GEIEIDARTVMRIYRVIPW 249 >gi|299134983|ref|ZP_07028174.1| transcriptional repressor, LexA family [Afipia sp. 1NLS2] gi|298589960|gb|EFI50164.1| transcriptional repressor, LexA family [Afipia sp. 1NLS2] Length = 234 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 57/229 (24%), Gaps = 11/229 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I+ + + PS K LD S + R R + Sbjct: 1 MLTRKQYELLRFINERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLANR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-------GSGGFFDSGVFPT 111 + + + + + P G Sbjct: 61 ARAIEVIKLPEPVASSGARRGFTPSVIEGNLGKVRSTVPGGFDESGEQPVAVPVMGRIAA 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 G + + + + SM GD+ ++ + GD Sbjct: 121 GTPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVEAGILDGDMALIQRNENADTGDI 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R SI L N Y V + + + +++ Sbjct: 181 VVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 228 >gi|309807064|ref|ZP_07701044.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|325911652|ref|ZP_08174060.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|308166560|gb|EFO68759.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|325476638|gb|EGC79796.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 227 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 59/223 (26%), Gaps = 24/223 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT------- 65 ID +++NLT L +K G +S ++ R+P E I +I Sbjct: 12 IDYFRKQNNLTMEELGQKLGKATSSISRWVSGE-----RYPKIEEIEQIANFFNTDIYTL 66 Query: 66 --NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG------FFDSGVFPTGNKWNT 117 + ++ + + + G G Sbjct: 67 IFGFNYNEDSKSDLLTVYNQLADIRKHKVYSYAQQQLDEQNKKRSIYVVGTSAAGEPIEY 126 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + D + SM P I+ + + G+ + + Sbjct: 127 GDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGEIGIFEING 183 Query: 178 GDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L S+N Y + + +++ Sbjct: 184 SAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 226 >gi|257468521|ref|ZP_05632615.1| LexA repressor [Fusobacterium ulcerans ATCC 49185] gi|317062781|ref|ZP_07927266.1| LexA repressor [Fusobacterium ulcerans ATCC 49185] gi|313688457|gb|EFS25292.1| LexA repressor [Fusobacterium ulcerans ATCC 49185] Length = 212 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 19/216 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + E L+ LA G TS +K+++ + + L T Sbjct: 3 IGERIKKKREELKLSQEQLAEIMGYKSKTSIHKAEQGITDLPQS--KIIEFARALKTTPS 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K + I + + + GN + + + Sbjct: 61 YLMGWEEKIEKSNAVILDKSQFIYVPVYGKA-----------SAGNGYINMDT-VLYDKL 108 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 I + SM P G+ ++++ C ++ + + K++ Sbjct: 109 IHINGYSHDSFLIEVSGDSMEPTILDGEFVLVDPTRTEICEGKIYVITYNNETYIKMIEK 168 Query: 188 RRGRSID-LMSLNCCYPVDTVEMSD---IEWIARIL 219 I L S+N Y ++ + ++ R++ Sbjct: 169 HEEDEIVLLKSVNQKYRDKVIKKEEFENVKIEGRVV 204 >gi|258544054|ref|ZP_05704288.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826] gi|258520682|gb|EEV89541.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826] Length = 211 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 14/211 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ E +T A + G+ ++ ++ R P + + ++ Sbjct: 5 ERLRKIVEGSGITQGDFAAQMGVAVSAQRNYEKG-----LRKPDIDYLQRL-------HD 52 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHNG 129 D+ + TT+ E + + GS G G + + V + G Sbjct: 53 AGYDVLYLLTGTTKIPEGYVRIPKMSARGSMGSGIDGALAHDDVLEYITVSKDWIDRTMG 112 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 Y+ + SM P + L+++ + D + + G++ K L + Sbjct: 113 TYSKADNLRIIHGRGDSMAPTFSDNTPLLVDIGVTNFQQDAIYLFQLFGEVYIKRLQRKP 172 Query: 190 GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 +S N Y + E D IA ++ Sbjct: 173 RGGYKAISDNKYYESFDILEPDDFRIIALVV 203 >gi|84687233|ref|ZP_01015114.1| LexA repressor [Maritimibacter alkaliphilus HTCC2654] gi|84664821|gb|EAQ11304.1| LexA repressor [Rhodobacterales bacterium HTCC2654] Length = 230 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 7/225 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + + E I + +R + PS K L S + R R Sbjct: 1 MLTKKQLDLLEFIHKRIQRDGVPPSFDEMKEALQLRSKSGIHRLITALEERGYIRRLAHR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++ + ++ + + G G Sbjct: 61 ARAIEVTRLPDALDPSGKAGFEPRVIDGDRPDSRPAQAMPLEGSAMDLPLLGRIAAGTPI 120 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + G + + + SM+ GD++I+ + GD ++ + Sbjct: 121 EAIEDGQSHVSVPGAMVGNGKHYALEVKGDSMINAGINSGDVVIIRETSHADNGDIVVAQ 180 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R G I L + N + + I+ +++ Sbjct: 181 VDGYEATLKRF-RRAGDMIALEAANPAFETRILPQGQIKVQGKLV 224 >gi|294791093|ref|ZP_06756251.1| repressor LexA [Scardovia inopinata F0304] gi|294458990|gb|EFG27343.1| repressor LexA [Scardovia inopinata F0304] Length = 264 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 59/230 (25%), Gaps = 23/230 (10%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNK-----------SKRFGIEGRNRWPS 54 +I +AI+ + PS +A+ GL TS K + +GR Sbjct: 34 QILQAIEEYSTTKGYIPSFREIAQLVGLKSTSSVKHQLNVLEKKGFIRLGANKGRAIELI 93 Query: 55 T----ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 T ESI E + GR S G Sbjct: 94 THLEEESITDASPQAQEKDQDHETDSGTYGRAEIYPFPTSQSESIVQSTDVPLV--GRIA 151 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 G + + SM+ GD +++ GD Sbjct: 152 AGTPITAEQHIDDVMRLPQRLTGDGNLFMLEVHGDSMIDAAICDGDFVVVREQHTAENGD 211 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K + + LM N Y + + + +++ Sbjct: 212 IVAALLD-DEATVKTFRKDKSGHLWLMPHNPEYSPI--DGTYATIMGKVV 258 >gi|317484266|ref|ZP_07943191.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6] gi|316924474|gb|EFV45635.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6] Length = 241 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 69/235 (29%), Gaps = 33/235 (14%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +DR+ L + LA G+ P + ++++R R + K+ ++ Sbjct: 12 AILDRLLSGAGLHRDAQLAALLGVSPQAVSQARR------KRKIPEGWVVKVSQQCGLSM 65 Query: 70 CQLLDLPFSDGRT--TEKKEKEIPLLYFPPSGS--------GGFFDSGVFPTGNKW---- 115 L+ + + P+G+ + G Sbjct: 66 DWLMFGKGDESTPVASHAPVASSTSQASTPAGAAVPDLDLLCIPLVAASLSAGVGSLQTE 125 Query: 116 ----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + G + K SM P GD+ +++ + Q + Sbjct: 126 ADVLDYFAFRSDWLCRKG---NPDKMVLMKVYGDSMEPEICHGDMALIDQSKQQIYPHTI 182 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221 +I K + + G + L SLN Y V+ + I +++W Sbjct: 183 YAVGVNEEIYIKQIETLPGHRMLLRSLNERYEPIEVDLRGDMAESVRIIGKVIWW 237 >gi|254511805|ref|ZP_05123872.1| LexA repressor [Rhodobacteraceae bacterium KLH11] gi|221535516|gb|EEE38504.1| LexA repressor [Rhodobacteraceae bacterium KLH11] Length = 232 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 13/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + + + PS K+ LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRVQVDGVPPSFDEMKSALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ + G E + G G Sbjct: 61 ARAIEIVKLPESLGGEPTVGFKPRVISGDRPEGPRPANFEPVTVDAMELPVM--GRIAAG 118 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + R G + + + + SM GD++++ + GD Sbjct: 119 VPIEAISHVSHRVAVPGSMVSGSGEHYALEVRGDSMIEAGINDGDVVVIRETSAADNGDI 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R G++I L + N Y + ++ R++ Sbjct: 179 VVALVEDQEATLKRFFRR-GQAIALEAANPAYETRVLPEDKVKVQGRLV 226 >gi|324116784|gb|EGC10698.1| peptidase S24 [Escherichia coli E1167] Length = 229 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 54/222 (24%), Gaps = 23/222 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + LT L G+ + K + T I +I A Sbjct: 7 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + +T + G E+ Sbjct: 61 WLSSGVGNMSDSTVQPIPSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 117 Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM GD+L ++ ++ GD + Sbjct: 118 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 177 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 178 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 218 >gi|309797052|ref|ZP_07691451.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] gi|308119335|gb|EFO56597.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] Length = 251 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + LT L G+ + K + T I +I A Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + +T + + G E+ Sbjct: 83 WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139 Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM GD+L ++ ++ GD + Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 200 VKRLQMMKN-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240 >gi|306841869|ref|ZP_07474549.1| LexA repressor [Brucella sp. BO2] gi|306287999|gb|EFM59401.1| LexA repressor [Brucella sp. BO2] Length = 240 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 56/235 (23%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105 + L L E + + Sbjct: 61 ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GD +I+ Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGTGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K + SI L + N Y + +++ Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234 >gi|254821025|ref|ZP_05226026.1| LexA repressor [Mycobacterium intracellulare ATCC 13950] Length = 236 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 56/217 (25%), Gaps = 20/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I PS + GL TS + +E + + + + Sbjct: 31 QRTILNVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVD 90 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 G + +P+L +G + +P Sbjct: 91 VRGADDDVAAPATEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 144 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K SM GD +++ + GD + G+ Sbjct: 145 LVG-------EGTLFLLKVVGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMLD-GEATV 196 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + LM N + +D + +++ Sbjct: 197 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 230 >gi|225351434|ref|ZP_03742457.1| hypothetical protein BIFPSEUDO_03029 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157778|gb|EEG71061.1| hypothetical protein BIFPSEUDO_03029 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 238 Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 67/220 (30%), Gaps = 17/220 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNR-WPSTESIFK 60 +K+ AI + PS + AGL P+S ++ + +G R + + Sbjct: 24 QRKVLGAIKKHLVEQGFAPSFREIGEAAGLKSPSSVKHQLQVLDDKGFIRMNANKGRAIE 83 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +++ ++ + + I P + + + + + Sbjct: 84 VVSFDDDEVSPGKVAQVIPFPSQSDSSGSIMASRDVPLVGRIAAGVPITAEQHVDDVMRL 143 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + + SM+ GD +++ GD + + Sbjct: 144 PERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQNTAENGDIVAALLD-DE 195 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L+ N Y + + E + +++ Sbjct: 196 ATVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 232 >gi|58040701|ref|YP_192665.1| LexA repressor [Gluconobacter oxydans 621H] gi|58003115|gb|AAW62009.1| LexA repressor [Gluconobacter oxydans 621H] Length = 259 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 58/241 (24%), Gaps = 31/241 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSK---------- 42 M + ++ ID R +PS L K+G+ + + Sbjct: 22 MLTRKQHQLLLYIDDHLRRTGYSPSFDEMKDALELRSKSGIHR-LISALEERGFLRRHHH 80 Query: 43 RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT---EKKEKEIPLLYFPPSG 99 R R P + T + G E P Sbjct: 81 RARALEVLRLPHMGTEAPAATGTGTAFVPAVLNQGQTGLEGAFSEASVANDRQTVSIPLY 140 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILI 158 + + + + VP + SM GDI I Sbjct: 141 GRIAAGLPIEAMQDDSDRIDVPVSLLGT-------GEHYALTVAGDSMIEAGILDGDIAI 193 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + G ++ ++ K L R G I L + N Y + R+ Sbjct: 194 IRRRETAENGQIIVALIDEQEVTLKKLRRR-GSMIALEAANRDYETRIFPAERVHIQGRL 252 Query: 219 L 219 + Sbjct: 253 V 253 >gi|229083181|ref|ZP_04215564.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] gi|228700099|gb|EEL52702.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] Length = 214 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 23/217 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ +++N+T LA + T+ + + R P I +I N + Sbjct: 8 LSQLMKKNNMTDEQLAELLSVSRTTVLRWRNGE-----RSPKMSKISQIAKILNVSATYF 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 +D S K +Y + N + VP+I G Sbjct: 63 IDENESYCPEDHAITKRNIPIYGTIAAGKPI-----EAIENVIGDIQVPDIILDKYGF-- 115 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + G I +L +N GD + D K + Sbjct: 116 --EKLLALRINGDSMNRIVHDGHIAVLERTTNINNGDIAAVLINGYDATLKRIYK-TNNR 172 Query: 193 IDLMSL--NCCYPVDTVEMSDIE------WIARILWA 221 I L N + +DIE + + +W+ Sbjct: 173 IILEPDSFNPSIHPLMFDCTDIENCPEIKVVGKYIWS 209 >gi|241663869|ref|YP_002982229.1| phage repressor [Ralstonia pickettii 12D] gi|240865896|gb|ACS63557.1| putative phage repressor [Ralstonia pickettii 12D] Length = 292 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 13/212 (6%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E +++PS A + + K+ + E + + +E+ + + Sbjct: 75 CEPADISPSLAAEMKVISKPL--QLKQLNTPEGTEELAKEQMRAAIHKLDESELRAIAES 132 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT------VGVPEIRSPHNGI 130 + L P + GN T +P + Sbjct: 133 KGFPARPIAVYNTLEELP-PETTVLITHVDVALSAGNGRETWHIEEKEPLPFQADYIRRL 191 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGDIVAKVLISRR 189 A K + SM P D ++++ A + + G+++ K L Sbjct: 192 DASPKNLVAVKVRGDSMEPRLFDDDTVVVDRADRRIPASGGVFAIVYAGEMLVKRLFKLP 251 Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218 SID++S N Y V+ I+ + R+ Sbjct: 252 DGSIDIVSDNPKYKSLVVQPDQLEHIDIVGRV 283 >gi|209549197|ref|YP_002281114.1| LexA repressor [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226694237|sp|B5ZN98|LEXA_RHILW RecName: Full=LexA repressor gi|209534953|gb|ACI54888.1| SOS-response transcriptional repressor, LexA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 239 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107 + K+ A + +I S S G Sbjct: 61 ARALEVIKLPEAYSPSIQPRRGFSPSVIEGSLGKPQPAAAPAPAKPVADNGNSVSVPVMG 120 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 G + + + + + SM+ GD +I+ + + Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232 >gi|145639950|ref|ZP_01795549.1| transcriptional activator-regulatory protein [Haemophilus influenzae PittII] gi|145270916|gb|EDK10834.1| transcriptional activator-regulatory protein [Haemophilus influenzae PittII] gi|309751666|gb|ADO81650.1| Conserved hypothetical protein [Haemophilus influenzae R2866] Length = 235 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 67/229 (29%), Gaps = 23/229 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E + M + + L+ LA K G+ + + + I + + I +I A Sbjct: 4 DTLAERLRYMMDFNALSQQSLADKVGVSQQAIGQILKGEIS------NPKKILEISTALG 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGN-KWNTVGVPEI 123 L T + + + + G+ PE+ Sbjct: 58 VNPHWLKTGRGPIEPTAQGTSIQSLVSTDSDEHHRFRVDYLDVQAAAGHSGIENADYPEV 117 Query: 124 RSPHNGIY---------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + SM+P KGDI+ +++ + G+ + Sbjct: 118 IQSIYFSKEGLLEIVGKSTNDGISLINVPTDSMVPTINKGDIVFVDTKVNYYTGEGVYFF 177 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI----EWIARIL 219 G K L+ +S N YP + ++ I + + Sbjct: 178 LLNGGAYIKRLMKLPTGVYRAISDNSVYPDFDIS-DELFDTAVIIGKFI 225 >gi|325675185|ref|ZP_08154870.1| LexA repressor [Rhodococcus equi ATCC 33707] gi|325553891|gb|EGD23568.1| LexA repressor [Rhodococcus equi ATCC 33707] Length = 220 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 29/218 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I I + H PS +A GL ++ +K + + Sbjct: 22 QQRILLTIRDWVDGHGCPPSTREIADAVGLRSTSTVSKHLKALEDK-------------- 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 L T + P + + + + +P Sbjct: 68 GFLRRGGSMTRQLDVRPFLTGSAPGRSTENTVTVPVVGDIAAGAPILAEEHADEMLSLPR 127 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD +++ + + G+ + G+ Sbjct: 128 ELVGS-------GTVFALRVRGESMVDAAICDGDTVVVRRQEEAHSGEIVAAMID-GEAT 179 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL R + L N Y ++ + + +++ Sbjct: 180 VKVLRRR-NGHVLLEPRNPAYE--VIDGDEAVILGKVV 214 >gi|157155496|ref|YP_001461935.1| putative repressor protein [Escherichia coli E24377A] gi|191166562|ref|ZP_03028391.1| putative repressor protein [Escherichia coli B7A] gi|218694199|ref|YP_002401866.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218703832|ref|YP_002411351.1| regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300819564|ref|ZP_07099758.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|300895848|ref|ZP_07114428.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|331676460|ref|ZP_08377157.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] gi|157077526|gb|ABV17234.1| putative repressor protein [Escherichia coli E24377A] gi|190903367|gb|EDV63087.1| putative repressor protein [Escherichia coli B7A] gi|218350931|emb|CAU96632.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218430929|emb|CAR11803.1| Regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300360234|gb|EFJ76104.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|300527890|gb|EFK48952.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|320196986|gb|EFW71605.1| Regulatory protein CI from bacteriophage origin [Escherichia coli WV_060327] gi|320643661|gb|EFX12798.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. 493-89] gi|320648981|gb|EFX17575.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. H 2687] gi|320665037|gb|EFX32141.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H7 str. LSU-61] gi|323153453|gb|EFZ39708.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|325497847|gb|EGC95706.1| putative repressor protein [Escherichia fergusonii ECD227] gi|331075953|gb|EGI47250.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] Length = 251 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + LT L G+ + K + T I +I A Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + +T + + G E+ Sbjct: 83 WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139 Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM GD+L ++ ++ GD + Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 200 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240 >gi|323159779|gb|EFZ45752.1| peptidase S24-like family protein [Escherichia coli E128010] Length = 230 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 15/215 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E +D T LA++ G+ +S N+ R T I K+L E + Sbjct: 5 ERLDLAMRNAKFTQGRLAKEVGMAQSSVNQLLNKANGSR----KTVEIAKVLGVNPEWLA 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH--N 128 + + + I + + G P+I Sbjct: 61 SGVGPMEIVTSADSHQIRNIS-EDWVTDSYVVDVLDIRYSCGPGSYNSDFPDIVRSIAIE 119 Query: 129 GIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 YA + + SM D++ ++ +++ GD + +G Sbjct: 120 PGYASRVFGGRPASAIKAINAHGDSMKGTIDPEDLVFVDVSVRTFNGDGIYAFTYSGTSH 179 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 K L + ++ ++S N Y +E D E + Sbjct: 180 IKRLQKIKD-TLTVISDNPAYKDWAIEPEDFEQLH 213 >gi|302383254|ref|YP_003819077.1| LexA family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193882|gb|ADL01454.1| transcriptional repressor, LexA family [Brevundimonas subvibrioides ATCC 15264] Length = 230 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 6/224 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + ++PS K LD S + R R Sbjct: 1 MLTKKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60 Query: 59 FKILA--ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + L E R + P P + + G G Sbjct: 61 ARALEVVKLPEQATTGPVRGRQPFRPDVIEGGGRPRAAEPANDTRELVLVGKIAAGVPIA 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + R + + + SM GD++++ + G+ ++ Sbjct: 121 AIQQDHGRYSVPEAMLGAGEHYMLEIEGDSMIEAGILNGDLVVIKRVDTASSGEIVVALV 180 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L ++G SI L N Y +E +++ Sbjct: 181 EGEEATLKRL-RKKGNSIALEPANRAYETRIFGPDQVEVQGKLV 223 >gi|256061227|ref|ZP_05451378.1| LexA repressor [Brucella neotomae 5K33] gi|261325234|ref|ZP_05964431.1| LexA repressor [Brucella neotomae 5K33] gi|261301214|gb|EEY04711.1| LexA repressor [Brucella neotomae 5K33] Length = 240 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 56/235 (23%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105 + L L E + + Sbjct: 61 ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GD +I+ Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K L SI L + N Y + +++ Sbjct: 181 ANPGEIVVALVDEEEATLKRLRREGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234 >gi|296101665|ref|YP_003611811.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056124|gb|ADF60862.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 256 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 15/228 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + LT L G+ + K + + + K+ + Sbjct: 27 LAERLKEARTLRGLTQKALGDLVGVSQAAIQKIETGKANQTTKLVELANALKV-KPEWLS 85 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-------SGGFFDSGVFPTGNK------W 115 + L ++ + + S F G+ + Sbjct: 86 SGEGAMLLTGQDEAIPPSDQWGTVEPWDNSTPLPDDEVEVPFLKDIELACGDGTFPREDY 145 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 N + ++ + A + SM P+ +G + +N + ++ Sbjct: 146 NGYKLRFSKATLRRVNAHRESVICFPAHGNSMEPVIPEGTTVAININDKKIVDGKVYAIS 205 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 + G K+L + + S N +P + ++ ++ I R+ W S Sbjct: 206 QDGWNRLKILYRVGPNRLSIRSFNHVEHPDEEADLDSVQIIGRMFWTS 253 >gi|331695961|ref|YP_004332200.1| SOS-response transcriptional repressor, LexA [Pseudonocardia dioxanivorans CB1190] gi|326950650|gb|AEA24347.1| SOS-response transcriptional repressor, LexA [Pseudonocardia dioxanivorans CB1190] Length = 243 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 64/226 (28%), Gaps = 25/226 (11%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPS 54 TS + +K+ E I ER PS + GL TS ++ + +G R P+ Sbjct: 29 TSLTPRQRKVLEVIRDWVERFGYPPSVREIGDAVGLTSTSSVHHQLRSLERKGYLRRDPN 88 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + A + R +PLL +G Sbjct: 89 RTRAVDVRAPEDVADADADSRDPGTTRDEHPAPAYVPLLGDIAAGGPI------LAEQAV 142 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P + + SM GD +++ G+ + Sbjct: 143 QSVFPLPREIVG-------EGTLFLLNVRGDSMVEAAITDGDWVVVRQQPVAEQGEIVAA 195 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K R + LM N Y + + R++ Sbjct: 196 MID-GEATVKTFRRR-DGHVWLMPANPAYDPI--PGDEATILGRVV 237 >gi|167856791|ref|ZP_02479443.1| putative prophage repressor CI [Haemophilus parasuis 29755] gi|167852086|gb|EDS23448.1| putative prophage repressor CI [Haemophilus parasuis 29755] Length = 217 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 67/218 (30%), Gaps = 28/218 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN---- 66 + + + NL +A G + R P+ + +++ T Sbjct: 7 QYVREKMQEQNLRQDDIAESMGKTQGAIGHWLTG-----RRMPNVNEVAQMINLTGVNKV 61 Query: 67 --ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + D + T+ KK + PL+ +G G ++ + Sbjct: 62 ILNGDGTIEDFDPNITPTSVKKSRAYPLVSSIQAGMWTETYDFRDSEG--YDYIDTEIDA 119 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 P + SM P + +GD+++++ + + GD + G+ K Sbjct: 120 GP---------DAFFLRVSGMSMEPKFSEGDLVLIDVRKRPHPGDFVAAVNGNGEATLKR 170 Query: 185 LISR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +L+ LN +P + DI I Sbjct: 171 YRELGELSPSGNPHFELVPLNQDFPTLSSMKQDIRIIG 208 >gi|90423954|ref|YP_532324.1| LexA repressor [Rhodopseudomonas palustris BisB18] gi|123089654|sp|Q215D1|LEXA_RHOPB RecName: Full=LexA repressor gi|90105968|gb|ABD88005.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas palustris BisB18] Length = 237 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + ++ I+ + + PS K LD S + R R P+ Sbjct: 1 MLTRKQYELLRFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------GFFDSGV 108 +++ + + + + G G Sbjct: 61 ARAIEVIKLPELGVNPGGGNGRRGFTPSVIEGNLGRVRPAASLGGDDDSGRTVAVPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G + + + + SM+ GD+ ++ + Sbjct: 121 IAAGTPIEALQTRSHTISMPADMLGSGEHYALEVRGDSMVDAGILDGDMALIQKNDSADT 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K R SI L N Y V + + + +++ Sbjct: 181 GDIVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 231 >gi|311068351|ref|YP_003973274.1| LexA repressor [Bacillus atrophaeus 1942] gi|310868868|gb|ADP32343.1| LexA repressor [Bacillus atrophaeus 1942] Length = 206 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 62/227 (27%), Gaps = 36/227 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++ I I + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQLDILRFIKAEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL E+ + + P S + N Sbjct: 61 TKPRAIEILD-------------------EEEVQIPKSQVVNVPVIGKVTAGSPITAVEN 101 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +P+ P + SM+ D +I+ N G+ ++ Sbjct: 102 IEEYFPLPDRMVPP------DEHVFMLEIMGESMIDAGILDKDYVIVKQQSTANNGEIVV 155 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + +++ Sbjct: 156 AMTEDDEATVKRFYK-EDTHVRLQPENPTMEPIILQN--VSILGKVI 199 >gi|62179766|ref|YP_216183.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127399|gb|AAX65102.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 259 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ N+ + LA G+D + ++ + G+ + + +++ ++ Sbjct: 2 NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLGV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117 I +L S G T K GN Sbjct: 58 DIAELFT-SDSKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + ++ + + SM P GD++ ++ +I GD + + Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y ++ ++L SQ Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223 >gi|16273380|ref|NP_439627.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20] gi|260580259|ref|ZP_05848088.1| transcriptional regulatory protein [Haemophilus influenzae RdAW] gi|1175815|sp|P44207|Y1476_HAEIN RecName: Full=Uncharacterized HTH-type transcriptional regulator HI_1476 gi|1574317|gb|AAC23123.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20] gi|260092936|gb|EEW76870.1| transcriptional regulatory protein [Haemophilus influenzae RdAW] Length = 239 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 86/239 (35%), Gaps = 27/239 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E I+ + ++ N PS ARK G+ ++ + ++ + PS ++ K Sbjct: 1 MQYQNQDNFPERIEYLVDKLN-GPSEFARKTGVTLSTITRWRKGEAD-----PSRSNLVK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPT----- 111 I T +I L + +TTE+K G + + Sbjct: 55 IAEVTGVSIEWLATGKIKEEKTTEEKPAGSLVSRAFERMQAMLEEGVSMIDSYSSINVSA 114 Query: 112 --GNKWNTVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 G+ + P+ + P++ SMLP D ++++ + + Sbjct: 115 GFGSFNEGITQPDGQEPYSDELLTSLGVKADNCAVFWANGNSMLPTINNYDQMLVDLSRK 174 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMS---DIEWIARIL 219 GDR+ + + K + I L+S N YP ++ +++ I +++ Sbjct: 175 EIQGDRIYLVQNGESVWVKRV-KMEWDGISLISDNKEEYPPISITGENAQNLQIIGQVV 232 >gi|311898752|dbj|BAJ31160.1| putative LexA repressor [Kitasatospora setae KM-6054] Length = 289 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 56/219 (25%), Gaps = 28/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I +R PS + + GL TS ++ +G R Sbjct: 88 QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 137 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 R T + P + P + + +P Sbjct: 138 --RDPHRPRAYEVRGVEVARPTATETSGRPSTSYVPLVGRIAAGGPILAEQTVEDVFPLP 195 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + SM GD + + GD + G+ Sbjct: 196 RQLVG-------EGELFALTVKGDSMVEAAICDGDWVTVRKQPVAENGDIVAAMID-GEA 247 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L I LM N Y + + +++ Sbjct: 248 TVKRLKR-EDGKIWLMPHNAAYEPI--PGDNATILGKVV 283 >gi|260556784|ref|ZP_05829002.1| LexA repressor [Acinetobacter baumannii ATCC 19606] gi|260410043|gb|EEX03343.1| LexA repressor [Acinetobacter baumannii ATCC 19606] Length = 224 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 24/223 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + + +T LA K+G+ + + + + ST SI + Sbjct: 5 MATL-----GENLKAIRKAKKMTQKELAMKSGVKQSVISDLETGNAK------STGSILE 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A T +L S + + + +G + Sbjct: 54 LATALGVTAEELKKGIVSKFDNNVEPITKKLIPVLSWVQAGTMTSVEAIDPNKINEWLP- 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRT 177 P + S P Y +GD +++N QV D ++++ + Sbjct: 113 PLSADD-------PDGCFYLRVVGVSNSPRYEEGDYILVNPNYQVCDLIADDLIVVRNNS 165 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 K L+ + L +LN + + +E D +E + ++ Sbjct: 166 D-ATFKKLVIESDQRKYLQALNPNFHPNIIEFEDGMELVGLVI 207 >gi|312138044|ref|YP_004005380.1| lexa repressor [Rhodococcus equi 103S] gi|311887383|emb|CBH46695.1| LexA repressor [Rhodococcus equi 103S] Length = 212 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 29/218 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I I + H PS +A GL ++ +K + + Sbjct: 14 QQRILLTIRDWVDGHGCPPSTREIADAVGLRSTSTVSKHLKALEDK-------------- 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 L T + P + + + + +P Sbjct: 60 GFLRRGGSMTRQLDVRPFLTGSAPGRSTENTVTVPVVGDIAAGAPILAEEHADEMLSLPR 119 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD +++ + + G+ + G+ Sbjct: 120 ELVGS-------GTVFALRVRGESMVDAAICDGDTVVVRRQEEAHSGEIVAAMID-GEAT 171 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL R + L N Y ++ + + +++ Sbjct: 172 VKVLRRR-NGHVLLEPRNPAYE--VIDGDEAVILGKVV 206 >gi|256113706|ref|ZP_05454510.1| LexA repressor [Brucella melitensis bv. 3 str. Ether] gi|265995060|ref|ZP_06107617.1| LexA repressor [Brucella melitensis bv. 3 str. Ether] gi|262766173|gb|EEZ11962.1| LexA repressor [Brucella melitensis bv. 3 str. Ether] Length = 240 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105 + L L E + + Sbjct: 61 ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GD +I+ Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K SI L + N Y + +++ Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRLGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234 >gi|260664377|ref|ZP_05865230.1| LexA repressor [Lactobacillus jensenii SJ-7A-US] gi|260562263|gb|EEX28232.1| LexA repressor [Lactobacillus jensenii SJ-7A-US] Length = 208 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 63/223 (28%), Gaps = 31/223 (13%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + K++ I+ + ++ ++ S L+ K G+ + + R K Sbjct: 10 MRNSKEVIAYINELRKQQKMSISELSEKVGMAKSGVSLYFNG-----KREFPINHAEKFA 64 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + + LL + P + N + Sbjct: 65 KALHTNVFDLLGVGDDSMIK-------------VPVLGEIACGQPILAEPNIEGYRYI-- 109 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K + SM+P + ++++ V D + + Sbjct: 110 ------NCRDQSSNLFFLKAKGDSMVPTIPENSYVLIDRDESVEDNDIVAVLID-NSATL 162 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWAS 222 K G ++ L N +P + ++ + + + + S Sbjct: 163 KRYHK-NGNTVTLTGDNPNFPPIVLTSTEDAIAQILGKAIQVS 204 >gi|261406209|ref|YP_003242450.1| LexA family transcriptional repressor [Paenibacillus sp. Y412MC10] gi|329930854|ref|ZP_08284253.1| repressor LexA [Paenibacillus sp. HGF5] gi|261282672|gb|ACX64643.1| transcriptional repressor, LexA family [Paenibacillus sp. Y412MC10] gi|328934556|gb|EGG31061.1| repressor LexA [Paenibacillus sp. HGF5] Length = 208 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 32/226 (14%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M+ S ++ I E I PS + GL ++ + R +G R Sbjct: 1 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + + +L P + N Sbjct: 61 TK--PRAIELLGQEESESANLFTHTIAR-------------VPVVGKVTAGVPITAMENI 105 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P+ Y + SM GD +I+ + GD ++ Sbjct: 106 EDYFPLPQH-------YVGDDKVFMLSVVGDSMIEAGIHSGDYVIVRQQQTADNGDIVVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + L N Y + + + +++ Sbjct: 159 MTEEDEATVKTFYKEKD-HVRLQPENPTYEPLRLNH--VTILGKVI 201 >gi|299822660|ref|ZP_07054546.1| repressor lexA [Listeria grayi DSM 20601] gi|299816189|gb|EFI83427.1| repressor lexA [Listeria grayi DSM 20601] Length = 204 Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 68/220 (30%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPSTESIFK 60 + I++ I + PS + GL ++ + +R +G R P+ + Sbjct: 7 QQDIYDFIKAQVKAKGYPPSVREIGEAVGLASSSTVHGHLERLETKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E +IP P + + N + Sbjct: 67 IL--------------------SLEDEIDIPSTVAVPIIGKVTAGTPITAIENVEEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + + ++ + SM+ GD +I+ N G+ ++ + Sbjct: 107 PEHLT------SGESNVFMLEIDGESMMKAGILDGDRVIVRQQSNANNGEIVVAMTEDNE 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N + ++ + + +++ Sbjct: 161 ATCKRFYKEQD-HFRLQPENDAFEPIILQ--QVSILGKVI 197 >gi|327478517|sp|Q7TY15|LEXA_MYCBO RecName: Full=LexA repressor gi|327478518|sp|A1KM58|LEXA_MYCBP RecName: Full=LexA repressor gi|327478519|sp|C1AFH9|LEXA_MYCBT RecName: Full=LexA repressor Length = 236 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 20/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + I PS + GL TS + +E + + + + Sbjct: 31 QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 90 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L + G + P+L +G + +P Sbjct: 91 VRGADDAALPPVTEVAGSDALPEPTFAPVLGRIAAGGPI------LAEEAVEDVFPLPRE 144 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K SM GD +++ + GD + G+ Sbjct: 145 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 196 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + LM N + +D + +++ Sbjct: 197 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 230 >gi|49186482|ref|YP_029735.1| LexA repressor [Bacillus anthracis str. Sterne] gi|49180409|gb|AAT55785.1| LexA repressor [Bacillus anthracis str. Sterne] Length = 269 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 64 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 123 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 124 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 165 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 166 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 219 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 220 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 262 >gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B] gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B] Length = 244 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 71/250 (28%), Gaps = 46/250 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT H I I + + LT LA G+ S ++ + + + K Sbjct: 1 MTEAQH--IGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRS--KPDANKLVLLAK 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94 L E + + + ++PL+ Sbjct: 57 ELHTAVEYLLNGDTNDAMSFADSAASRRRLRGGTKQSASIVDNSESNITEWPVGKLPLIS 116 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----- 149 + +G P G+ + + P + + + SM Sbjct: 117 WVQAGDWSEIVDNFQP-GDAEDWIACP---------FPSGSHGFVLRVVGDSMYNPSGDM 166 Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 +R+GD + +N + ++ + K L+ L +LN +P + + Sbjct: 167 SFREGDFISVNPDREAQHRSLVIARHNGEKATFKQLLIDENDGPMLFALNPNWPKRYIAL 226 Query: 210 S-DIEWIARI 218 D E I + Sbjct: 227 DKDTEIIGVV 236 >gi|295111675|emb|CBL28425.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Synergistetes bacterium SGP1] Length = 233 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 77/228 (33%), Gaps = 13/228 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST---ES 57 MT + I I + + LA + G+ P + + + I R+ S E Sbjct: 1 MTEGAEAGIGARIMARRKALGMKRPELAERLGVKPNTLYRYEIGSIGIRDSMKSRIAKEL 60 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + T + + + + + +G F+ G + Sbjct: 61 GVSLAYLVSGTAEVGRERGSEETPEPVVPPQVYLPILDQEACAGSGFNWSDVRAGARK-W 119 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + P + + T+ K + SM+ + G ++++N +V GD ++ Sbjct: 120 MPWPTLETGGP---VGPTKPYFVKVEGDSMIGANIQDGCLILVNPNTEVRSGDIAYVRWN 176 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL-W 220 K +I ++L N + ++ ++E + +++ W Sbjct: 177 -DRCSVKGIIFYNDGRVELRPANKDFSSIWIQRDEVEFLTILGKVVRW 223 >gi|293418613|ref|ZP_06661048.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] gi|291325141|gb|EFE64556.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] Length = 251 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + LT L G+ + K + T I +I A Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + +T + + G E+ Sbjct: 83 WLSSGVGNMSDSTVQPIQTTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139 Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM GD+L ++ ++ GD + Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 200 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240 >gi|218886357|ref|YP_002435678.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757311|gb|ACL08210.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 236 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 27/232 (11%) Query: 10 WEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +EAI +R+ + + S LAR G+ P S N +++ G W + T Sbjct: 7 FEAIFERLMKAAGVRNDSELARALGITPQSVNGARKRGEVP-PAW-----VQSYAERTGT 60 Query: 68 TICQLLDLPFSDGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVFPTGNKWNTV- 118 + L + + + GN V Sbjct: 61 SSDWLFFGRGPMRVEEQAQAAPAGKSAFGPETVTCADCELVMVPMVEARLSAGNGSFEVG 120 Query: 119 -GVPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 V + + + SM P GD+++++ + + ++ Sbjct: 121 ADVERRYAFRTDFLLRKGSPSSMVLMRVDGDSMEPYVLNGDVVLVDQSQRDPRPGKVYAV 180 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221 + K +++ + L S N Y ++ + I R +W Sbjct: 181 GVEELVYLK-VVNASPGKLVLTSYNASYAPLEIDARGDLADGVRIIGRAVWV 231 >gi|313682117|ref|YP_004059855.1| phage repressor [Sulfuricurvum kujiense DSM 16994] gi|313154977|gb|ADR33655.1| putative phage repressor [Sulfuricurvum kujiense DSM 16994] Length = 219 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 25/228 (10%) Query: 1 MTSFSHKKIWEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M +FS I E I + + +A + +F K+ RN+ P TE Sbjct: 1 MKTFS--DIVETIKDIVSSEFPEKKVFDKDVAELLDISQMNFATMKK-----RNKIPFTE 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L + + + + +GG G Sbjct: 54 LLDFCAKRSIAINWLLYNQSPESLIEPTNRFYMVRYFSSVNASAGG---------GADNE 104 Query: 117 TVGVPEIRSPHNGIYAIQTQ-----DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + + N + ++ + SM P + DI+ +N + + Sbjct: 105 ELDYEPLMLEDNFVLSLGGEKELRHIEAINVSGDSMEPSFSYNDIIFINRSKTDISRGGI 164 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + R +D++S N YP ++E I R++ Sbjct: 165 FTIRTEHGLFIKRIQVRIDGKLDIISDNKDYPTYVARRDEVEVIGRVV 212 >gi|193067699|ref|ZP_03048666.1| putative repressor protein [Escherichia coli E110019] gi|192959111|gb|EDV89547.1| putative repressor protein [Escherichia coli E110019] Length = 251 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + LT L G+ + K + T I +I A Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + +T + + G E+ Sbjct: 83 WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139 Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM GD+L ++ ++ GD + Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 200 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240 >gi|170718159|ref|YP_001785187.1| phage repressor [Haemophilus somnus 2336] gi|168826288|gb|ACA31659.1| putative phage repressor [Haemophilus somnus 2336] Length = 235 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 19/224 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ER NLT LA+ + ++ + R P I I T Sbjct: 11 IGNRIREQRERLNLTRPELAKAVDVSLSALQGWE-----MNEREPQASMIITIANELGVT 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---GNKWNTVGVPEIRS 125 LL + T ++ E S + + G+ V P+ + Sbjct: 66 PNYLLTGENDQPKKTIERAVEKVKDLTENVVIMIASYSSINVSAGFGSFNEGVTKPDGKE 125 Query: 126 PHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGD 179 P+ + T SM P GD L+++ G D++ + + Sbjct: 126 PYADSLLQSLRVNPDKCAVFWTNGRSMEPTINNGDQLLVDLNRNQIKGDDKIYLIQHGEN 185 Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARIL 219 I K + + ++L+S N YP + + ++ I R++ Sbjct: 186 IWVKRVKMKWDG-VELVSDNKDEYPPIAISDEEAQNLQIIGRVV 228 >gi|331672656|ref|ZP_08373445.1| transcriptional activator-regulatory protein [Escherichia coli TA280] gi|331070299|gb|EGI41665.1| transcriptional activator-regulatory protein [Escherichia coli TA280] Length = 251 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + LT L G+ + K + T I +I A Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + +T + + G E+ Sbjct: 83 WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139 Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM GD+L ++ ++ GD + Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + ++S N Y +E + + +++ Sbjct: 200 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240 >gi|66396213|ref|YP_240570.1| ORF022 [Staphylococcus phage 29] gi|62636630|gb|AAX91741.1| ORF022 [Staphylococcus phage 29] Length = 209 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 72/221 (32%), Gaps = 22/221 (9%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +K+I I R+ + +N+ + L+R + T+ + + R E + K Sbjct: 1 MLGNKEIMAKNISRLMKENNVDRNKLSRDLKISYTTLSDWIN--AKTYPRIDKIEMLAKY 58 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 ++ + + + + + P S ++ N + + Sbjct: 59 FGVEKSSLVE---------SPNKIVQLDTLPVKKIPVVSKISAGMPIYTEENLVDYIYFS 109 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++ + SM L+ +GD++++ V G ++ + Sbjct: 110 TKNLNP------DKEEFGLQVSGDSMNELFDEGDVVVVEKDSIVENGQLGVVMINGYNGT 163 Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDTVEMSD-IEWIARIL 219 K + G I L+ N + D ++ + R++ Sbjct: 164 VKRI-RYNGDQIILIPESNNPNHYPQVYGKDDEVKIVGRVV 203 >gi|167970057|ref|ZP_02552334.1| LexA repressor [Mycobacterium tuberculosis H37Ra] gi|215404685|ref|ZP_03416866.1| LexA repressor [Mycobacterium tuberculosis 02_1987] gi|215412526|ref|ZP_03421260.1| LexA repressor [Mycobacterium tuberculosis 94_M4241A] gi|215431659|ref|ZP_03429578.1| LexA repressor [Mycobacterium tuberculosis EAS054] gi|215446973|ref|ZP_03433725.1| LexA repressor [Mycobacterium tuberculosis T85] gi|218754456|ref|ZP_03533252.1| LexA repressor [Mycobacterium tuberculosis GM 1503] gi|219558729|ref|ZP_03537805.1| LexA repressor [Mycobacterium tuberculosis T17] gi|253798198|ref|YP_003031199.1| repressor lexA [Mycobacterium tuberculosis KZN 1435] gi|254232822|ref|ZP_04926149.1| repressor lexA [Mycobacterium tuberculosis C] gi|254365377|ref|ZP_04981422.1| repressor lexA [Mycobacterium tuberculosis str. Haarlem] gi|254551776|ref|ZP_05142223.1| LexA repressor [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187737|ref|ZP_05765211.1| LexA repressor [Mycobacterium tuberculosis CPHL_A] gi|260201845|ref|ZP_05769336.1| LexA repressor [Mycobacterium tuberculosis T46] gi|260206029|ref|ZP_05773520.1| LexA repressor [Mycobacterium tuberculosis K85] gi|294994188|ref|ZP_06799879.1| LexA repressor [Mycobacterium tuberculosis 210] gi|297635328|ref|ZP_06953108.1| LexA repressor [Mycobacterium tuberculosis KZN 4207] gi|297732324|ref|ZP_06961442.1| LexA repressor [Mycobacterium tuberculosis KZN R506] gi|306776999|ref|ZP_07415336.1| repressor lexA [Mycobacterium tuberculosis SUMu001] gi|306780902|ref|ZP_07419239.1| repressor lexA [Mycobacterium tuberculosis SUMu002] gi|306785527|ref|ZP_07423849.1| repressor lexA [Mycobacterium tuberculosis SUMu003] gi|306790123|ref|ZP_07428445.1| repressor lexA [Mycobacterium tuberculosis SUMu004] gi|306794207|ref|ZP_07432509.1| repressor lexA [Mycobacterium tuberculosis SUMu005] gi|306798625|ref|ZP_07436927.1| repressor lexA [Mycobacterium tuberculosis SUMu006] gi|306807479|ref|ZP_07444147.1| repressor lexA [Mycobacterium tuberculosis SUMu007] gi|306968779|ref|ZP_07481440.1| repressor lexA [Mycobacterium tuberculosis SUMu009] gi|306973114|ref|ZP_07485775.1| repressor lexA [Mycobacterium tuberculosis SUMu010] gi|307080823|ref|ZP_07489993.1| repressor lexA [Mycobacterium tuberculosis SUMu011] gi|307085415|ref|ZP_07494528.1| repressor lexA [Mycobacterium tuberculosis SUMu012] gi|313659657|ref|ZP_07816537.1| LexA repressor [Mycobacterium tuberculosis KZN V2475] gi|327478521|sp|A5U672|LEXA_MYCTA RecName: Full=LexA repressor gi|327478522|sp|Q50765|LEXA_MYCTU RecName: Full=LexA repressor gi|124601881|gb|EAY60891.1| repressor lexA [Mycobacterium tuberculosis C] gi|134150890|gb|EBA42935.1| repressor lexA [Mycobacterium tuberculosis str. Haarlem] gi|253319701|gb|ACT24304.1| repressor lexA [Mycobacterium tuberculosis KZN 1435] gi|308214656|gb|EFO74055.1| repressor lexA [Mycobacterium tuberculosis SUMu001] gi|308326302|gb|EFP15153.1| repressor lexA [Mycobacterium tuberculosis SUMu002] gi|308329831|gb|EFP18682.1| repressor lexA [Mycobacterium tuberculosis SUMu003] gi|308333474|gb|EFP22325.1| repressor lexA [Mycobacterium tuberculosis SUMu004] gi|308337469|gb|EFP26320.1| repressor lexA [Mycobacterium tuberculosis SUMu005] gi|308341141|gb|EFP29992.1| repressor lexA [Mycobacterium tuberculosis SUMu006] gi|308346074|gb|EFP34925.1| repressor lexA [Mycobacterium tuberculosis SUMu007] gi|308353666|gb|EFP42517.1| repressor lexA [Mycobacterium tuberculosis SUMu009] gi|308357513|gb|EFP46364.1| repressor lexA [Mycobacterium tuberculosis SUMu010] gi|308361466|gb|EFP50317.1| repressor lexA [Mycobacterium tuberculosis SUMu011] gi|308365061|gb|EFP53912.1| repressor lexA [Mycobacterium tuberculosis SUMu012] gi|323718714|gb|EGB27876.1| repressor lexA [Mycobacterium tuberculosis CDC1551A] Length = 236 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + I PS + GL TS + +E + + + + Sbjct: 31 QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 90 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L + G + +P+L +G + +P Sbjct: 91 VRGADDAALPPVTEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 144 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K SM GD +++ + GD + G+ Sbjct: 145 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 196 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + LM N + +D + +++ Sbjct: 197 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 230 >gi|296171811|ref|ZP_06852925.1| SOS regulatory protein LexA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893947|gb|EFG73715.1| SOS regulatory protein LexA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 231 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 20/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I PS + GL TS + +E + + + + Sbjct: 26 QRTILNVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVD 85 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 G + +P+L +G + +P Sbjct: 86 VRGADDEVAAPATEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 139 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K SM GD +++ + GD + G+ Sbjct: 140 LVG-------EGTLFLLKVVGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMLD-GEATV 191 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + LM N + ++ + +++ Sbjct: 192 KTFKR-AGGQVWLMPHNPAFDPI--PGNEATVLGKVV 225 >gi|240080373|ref|ZP_04724916.1| putative CI protein [Neisseria gonorrhoeae FA19] gi|254494046|ref|ZP_05107217.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|226513086|gb|EEH62431.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|319411131|emb|CBY91536.1| Repressor protein CI [Neisseria meningitidis WUE 2594] Length = 232 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 19/228 (8%) Query: 11 EAIDRM-AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + A+R N + +R P N+ + + +I Sbjct: 5 DRIKNLIADRFNGNQAEFSRAINKAPAQINQWLNGYRNIGD---GVAAQIEIALGLPRGW 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPS--------GSGGFFDSGVFPTGNKW-NTVG- 119 D P + + I + S F+ GN + + + Sbjct: 62 VDGNDKPGIPVDSIKSNATVIGSVDAWDSKTPLSDDDCEVPFYKDVCLSAGNGFSDEIED 121 Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + +S SM P++ G L +N+A ++ ++ Sbjct: 122 YNGYKLRFSKSTLRRHGINPDDVVCVSADGDSMEPVFPDGATLGINTADKMIKDGKIYAI 181 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 +G + K+L + + S N Y +T + + I R+ W S Sbjct: 182 NHSGLLRTKILQKLPDNQVRIKSYNPEYKDETASLDSLTVIGRVFWWS 229 >gi|187929409|ref|YP_001899896.1| putative phage repressor [Ralstonia pickettii 12J] gi|187726299|gb|ACD27464.1| putative phage repressor [Ralstonia pickettii 12J] Length = 302 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 65/236 (27%), Gaps = 27/236 (11%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES-----IFKILAATNETI 69 + ++ LA+KA L ++ + +R G + + + + Sbjct: 65 ARRTQLEMSQEALAKKARLSQSTIAQIERGRNRGSKYVVALADALLVPVRWLADGGDMPP 124 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD---------SGVFPTGNKWNTVGV 120 +T + + + + S + G + Sbjct: 125 RPSEVEGLFVSQTEAEDLVDRGVEELLQARSDDAYWKGTVAIPQFDAGGSMGGGIDLPDQ 184 Query: 121 P----------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 P E + SM PL+ GD L+L+ + D Sbjct: 185 PGLIQNLRVTKEWLDFNVRSCTSPKNLCVVTGFGDSMRPLFNPGDPLLLDRGVITVEIDA 244 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL--WASQ 223 + + K L G + +S N Y T+ D E R+L W S+ Sbjct: 245 VYFFRIGKEGFIKRLQRVPGNGLIAISENKAYREWTITPDMDFEVFGRVLKAWRSE 300 >gi|195661226|ref|YP_002117694.1| CI-like repressor [Lactobacillus phage Lrm1] gi|166200940|gb|ABY84327.1| CI-like repressor [Lactobacillus phage Lrm1] Length = 224 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 21/228 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ +I + ++ + R ++ S LAR+ + +S ++ R + K Sbjct: 1 MKTNDEIIKTLNDLRNREGISISELARRVDMAKSSVSRYFNGT-----REFPLNYVDKFA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 +A T + L KK Y P S G + T + T+ +P+ Sbjct: 56 SAL-HTTPESLIGVSPVDSFKVKKLNVHSYPYIPAEISAGILCNVDPLTSDDVETIQLPD 114 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGD 179 G YA + SM G ++ + + GD ++ Sbjct: 115 S---VMGRYAGDSSILMMHVNGESMNQTIPDGSLIAVKQYSDIQDLNDGDIVVFADDGDY 171 Query: 180 IVAKVLISRRGRSID-LMSLNCC--YPVD-----TVEMSDIEWIARIL 219 K + R + I + + + +E +I+ I R++ Sbjct: 172 A-VKYFYNDRQKQIVTFIPDSTDKRFSPIMYTYEDLEEENIKIIGRVV 218 >gi|315646590|ref|ZP_07899708.1| transcriptional repressor, LexA family protein [Paenibacillus vortex V453] gi|315278233|gb|EFU41553.1| transcriptional repressor, LexA family protein [Paenibacillus vortex V453] Length = 208 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 61/226 (26%), Gaps = 32/226 (14%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M+ S ++ I E I PS + GL ++ + R +G R Sbjct: 1 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + +L P + N Sbjct: 61 TK--PRAIELLGQEESDSANLFTHTIAR-------------VPVVGKVTAGVPITAMENI 105 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P+ Y + SM GD +I+ + GD ++ Sbjct: 106 EDYFPLPQH-------YVGDDKVFMLSVVGDSMIEAGIHSGDYVIVRQQQTADNGDIVVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + L N Y + + + +++ Sbjct: 159 MTEEDEATVKTFYKEKD-HVRLQPENPTYEPLRLNH--VTILGKVI 201 >gi|52141849|ref|YP_084980.1| LexA repressor [Bacillus cereus E33L] gi|51975318|gb|AAU16868.1| LexA repressor (SOS response repressor) [Bacillus cereus E33L] Length = 269 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 64 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 123 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 124 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 165 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 166 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 219 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 220 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 262 >gi|153000591|ref|YP_001366272.1| putative phage repressor [Shewanella baltica OS185] gi|151365209|gb|ABS08209.1| putative phage repressor [Shewanella baltica OS185] Length = 247 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 62/213 (29%), Gaps = 21/213 (9%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + A K G+ + + G P ++ +I +I L Sbjct: 35 SIREFAIKIGVSEGTLRNLIKGG------EPKLDTAIRIAEEAGVSIRWLATGNGPKYPN 88 Query: 83 TEKKEKEIPLLYFPPSGSG------GFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA-- 132 + + + + V TG+ + GV S Sbjct: 89 RQLDDISQEGIVYVHQDQFNEEYFLIEGYDVVVSTGHGAFNDETGVRRRLSFRKNWLKYR 148 Query: 133 --IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + SM P GD L+++ + + + D+ AK L Sbjct: 149 GLKPENLKVVYAKGNSMEPAIHSGDSLLVDISKTTLEDGCIFVLRLGDDLYAKRLQKLFD 208 Query: 191 RSIDLMSLNCCYPVDTVEMSD---IEWIARILW 220 I+++S N Y V + ++ I +++W Sbjct: 209 GGIEILSDNKEYKSQIVSAGELPMLQIIGKVVW 241 >gi|261495314|ref|ZP_05991765.1| putative LexA family transcriptional regulator/S24 family protease [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308991|gb|EEY10243.1| putative LexA family transcriptional regulator/S24 family protease [Mannheimia haemolytica serotype A2 str. OVINE] Length = 239 Score = 96.0 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 22/213 (10%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 S AR G+ S ++ + + PS ++ KI +N ++ L S ++ Sbjct: 26 NYSEFARAVGVAQASLSRWVKGEAD-----PSRSNLVKIAEVSNVSLEWLATGKESKPQS 80 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPT-------GNKWNTVGVPEIRSPHNGIYAIQ- 134 F T G+ V P+ + P+ Sbjct: 81 ENTSIVAREFERLEKMADDIVSMINGFSTINVSAGFGSFNEGVTKPDGQEPYADSLLQSL 140 Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRR 189 TSM P GD ++++ + + D++ + + K + + Sbjct: 141 GVKAHNCGVFWANGTSMHPTIADGDQMLVDFSKREPRGDDKIYLVQNGESVWVKRI-RKE 199 Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 I+L+S N Y + + ++ I +++ Sbjct: 200 WDYIELISDNESYRPIQITAEEAQNLQIIGQVV 232 >gi|332853630|ref|ZP_08434860.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332870803|ref|ZP_08439453.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] gi|332728454|gb|EGJ59828.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332732013|gb|EGJ63290.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] Length = 227 Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 13/202 (6%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 LAR G+ P S + G+++ E++ K L S + Sbjct: 24 DLARAVGVKPPSVSDWL----SGKSKTMEGENLLKASKFLGVNPNWLATGNGSPTNNNIE 79 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAIQTQDTRHKT 142 ++ +++ + G V P + + I + Sbjct: 80 DDQLSNVIFRDLNLHKIPILD-FVQAGFWHEVVYDGTTPHSYTYTDYISSNPEAIFSVIV 138 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-----IDLMS 197 Q SM P +++GD+LI++++I G ++ + + + K +L+ Sbjct: 139 QGNSMEPDFKEGDMLIVDASIAPKPGSYVIAQNGSHEATFKKYRVLSHDEYGRDIFELIP 198 Query: 198 LNCCYPVDTVEMSDIEWIARIL 219 LN +P+ + +I I ++ Sbjct: 199 LNKDFPILSSITHEIRIIGVVV 220 >gi|238021321|ref|ZP_04601747.1| hypothetical protein GCWU000324_01220 [Kingella oralis ATCC 51147] gi|237868301|gb|EEP69307.1| hypothetical protein GCWU000324_01220 [Kingella oralis ATCC 51147] Length = 226 Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 63/203 (31%), Gaps = 19/203 (9%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + S LAR G + + +R E KI T ++ L+ Sbjct: 24 SDSDLARWLGFATSVISGYRRRETVP------LEQCIKIAEQTGVSLDWLILGKGDPKPQ 77 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN------TVGVPEIRSPHNGIYAIQTQ 136 + + G + +P R N Sbjct: 78 HQPQSAVQDY--DDQDAVWVPLYDVYASAGGGEDVWGEEIEQYIPFSRVWLNQKNLHSKN 135 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + K + SM P GD++++N+A QV GD + + + K L + S+ + Sbjct: 136 LSCVKVRGDSMEPTLNNGDVILVNTARQV--GDGVFVVRIGSLLRVKRLQTLINGSLKIS 193 Query: 197 SLNCCYPVDTVEM---SDIEWIA 216 S N Y +T+ SD I Sbjct: 194 SDNPIYESETLNPKEDSDFAIIG 216 >gi|23502022|ref|NP_698149.1| LexA repressor [Brucella suis 1330] gi|62290057|ref|YP_221850.1| LexA repressor [Brucella abortus bv. 1 str. 9-941] gi|82699984|ref|YP_414558.1| LexA repressor [Brucella melitensis biovar Abortus 2308] gi|148558946|ref|YP_001259065.1| LexA repressor [Brucella ovis ATCC 25840] gi|161619096|ref|YP_001592983.1| LexA repressor [Brucella canis ATCC 23365] gi|163843409|ref|YP_001627813.1| LexA repressor [Brucella suis ATCC 23445] gi|189024297|ref|YP_001935065.1| LexA repressor [Brucella abortus S19] gi|225627613|ref|ZP_03785650.1| LexA repressor [Brucella ceti str. Cudo] gi|225852643|ref|YP_002732876.1| LexA repressor [Brucella melitensis ATCC 23457] gi|237815566|ref|ZP_04594563.1| LexA repressor [Brucella abortus str. 2308 A] gi|254689369|ref|ZP_05152623.1| LexA repressor [Brucella abortus bv. 6 str. 870] gi|254693853|ref|ZP_05155681.1| LexA repressor [Brucella abortus bv. 3 str. Tulya] gi|254697502|ref|ZP_05159330.1| LexA repressor [Brucella abortus bv. 2 str. 86/8/59] gi|254701886|ref|ZP_05163714.1| LexA repressor [Brucella suis bv. 5 str. 513] gi|254704432|ref|ZP_05166260.1| LexA repressor [Brucella suis bv. 3 str. 686] gi|254706672|ref|ZP_05168500.1| LexA repressor [Brucella pinnipedialis M163/99/10] gi|254714217|ref|ZP_05176028.1| LexA repressor [Brucella ceti M644/93/1] gi|254717653|ref|ZP_05179464.1| LexA repressor [Brucella ceti M13/05/1] gi|254730399|ref|ZP_05188977.1| LexA repressor [Brucella abortus bv. 4 str. 292] gi|256159873|ref|ZP_05457602.1| LexA repressor [Brucella ceti M490/95/1] gi|256255115|ref|ZP_05460651.1| LexA repressor [Brucella ceti B1/94] gi|256257615|ref|ZP_05463151.1| LexA repressor [Brucella abortus bv. 9 str. C68] gi|256263864|ref|ZP_05466396.1| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9] gi|260168846|ref|ZP_05755657.1| LexA repressor [Brucella sp. F5/99] gi|260546609|ref|ZP_05822348.1| peptidase family S24 [Brucella abortus NCTC 8038] gi|260566321|ref|ZP_05836791.1| peptidase family S24 [Brucella suis bv. 4 str. 40] gi|260754886|ref|ZP_05867234.1| LexA repressor [Brucella abortus bv. 6 str. 870] gi|260758103|ref|ZP_05870451.1| LexA repressor [Brucella abortus bv. 4 str. 292] gi|260761927|ref|ZP_05874270.1| LexA repressor [Brucella abortus bv. 2 str. 86/8/59] gi|260883898|ref|ZP_05895512.1| LexA repressor [Brucella abortus bv. 9 str. C68] gi|261214138|ref|ZP_05928419.1| LexA repressor [Brucella abortus bv. 3 str. Tulya] gi|261219492|ref|ZP_05933773.1| LexA repressor [Brucella ceti M13/05/1] gi|261222310|ref|ZP_05936591.1| LexA repressor [Brucella ceti B1/94] gi|261314133|ref|ZP_05953330.1| LexA repressor [Brucella pinnipedialis M163/99/10] gi|261321987|ref|ZP_05961184.1| LexA repressor [Brucella ceti M644/93/1] gi|261752449|ref|ZP_05996158.1| LexA repressor [Brucella suis bv. 5 str. 513] gi|261755109|ref|ZP_05998818.1| LexA repressor [Brucella suis bv. 3 str. 686] gi|261758334|ref|ZP_06002043.1| peptidase family S24 [Brucella sp. F5/99] gi|265998274|ref|ZP_06110831.1| LexA repressor [Brucella ceti M490/95/1] gi|294852484|ref|ZP_06793157.1| LexA repressor [Brucella sp. NVSL 07-0026] gi|297248457|ref|ZP_06932175.1| LexA repressor [Brucella abortus bv. 5 str. B3196] gi|29427806|sp|Q8G0F1|LEXA_BRUSU RecName: Full=LexA repressor gi|71648699|sp|Q57CZ5|LEXA_BRUAB RecName: Full=LexA repressor gi|123727397|sp|Q2YRR1|LEXA_BRUA2 RecName: Full=LexA repressor gi|166224557|sp|A5VQR8|LEXA_BRUO2 RecName: Full=LexA repressor gi|189046530|sp|A9M5F7|LEXA_BRUC2 RecName: Full=LexA repressor gi|189046531|sp|B0CGU2|LEXA_BRUSI RecName: Full=LexA repressor gi|229621201|sp|B2S5Z4|LEXA_BRUA1 RecName: Full=LexA repressor gi|254809090|sp|C0RJB4|LEXA_BRUMB RecName: Full=LexA repressor gi|23347975|gb|AAN30064.1| LexA repressor [Brucella suis 1330] gi|62196189|gb|AAX74489.1| LexA, LexA repressor [Brucella abortus bv. 1 str. 9-941] gi|82616085|emb|CAJ11123.1| Peptidase family S24:Peptidase S24, C-terminal:LexA DNA-binding region [Brucella melitensis biovar Abortus 2308] gi|148370203|gb|ABQ60182.1| LexA repressor [Brucella ovis ATCC 25840] gi|161335907|gb|ABX62212.1| LexA repressor [Brucella canis ATCC 23365] gi|163674132|gb|ABY38243.1| LexA repressor [Brucella suis ATCC 23445] gi|189019869|gb|ACD72591.1| Peptidase family S24 [Brucella abortus S19] gi|225617618|gb|EEH14663.1| LexA repressor [Brucella ceti str. Cudo] gi|225641008|gb|ACO00922.1| LexA repressor [Brucella melitensis ATCC 23457] gi|237788864|gb|EEP63075.1| LexA repressor [Brucella abortus str. 2308 A] gi|260095659|gb|EEW79536.1| peptidase family S24 [Brucella abortus NCTC 8038] gi|260155839|gb|EEW90919.1| peptidase family S24 [Brucella suis bv. 4 str. 40] gi|260668421|gb|EEX55361.1| LexA repressor [Brucella abortus bv. 4 str. 292] gi|260672359|gb|EEX59180.1| LexA repressor [Brucella abortus bv. 2 str. 86/8/59] gi|260674994|gb|EEX61815.1| LexA repressor [Brucella abortus bv. 6 str. 870] gi|260873426|gb|EEX80495.1| LexA repressor [Brucella abortus bv. 9 str. C68] gi|260915745|gb|EEX82606.1| LexA repressor [Brucella abortus bv. 3 str. Tulya] gi|260920894|gb|EEX87547.1| LexA repressor [Brucella ceti B1/94] gi|260924581|gb|EEX91149.1| LexA repressor [Brucella ceti M13/05/1] gi|261294677|gb|EEX98173.1| LexA repressor [Brucella ceti M644/93/1] gi|261303159|gb|EEY06656.1| LexA repressor [Brucella pinnipedialis M163/99/10] gi|261738318|gb|EEY26314.1| peptidase family S24 [Brucella sp. F5/99] gi|261742202|gb|EEY30128.1| LexA repressor [Brucella suis bv. 5 str. 513] gi|261744862|gb|EEY32788.1| LexA repressor [Brucella suis bv. 3 str. 686] gi|262552742|gb|EEZ08732.1| LexA repressor [Brucella ceti M490/95/1] gi|263093995|gb|EEZ17929.1| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9] gi|294821073|gb|EFG38072.1| LexA repressor [Brucella sp. NVSL 07-0026] gi|297175626|gb|EFH34973.1| LexA repressor [Brucella abortus bv. 5 str. B3196] gi|326409162|gb|ADZ66227.1| Peptidase family S24 [Brucella melitensis M28] gi|326538872|gb|ADZ87087.1| LexA repressor [Brucella melitensis M5-90] Length = 240 Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105 + L L E + + Sbjct: 61 ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GD +I+ Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K SI L + N Y + +++ Sbjct: 181 ANPGEIVVALVDEEEATLKRFRREGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234 >gi|157734756|dbj|BAF80762.1| prophage repressor [Enterobacteria phage P22] Length = 216 Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 28/220 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++ + + L + G+ + ++ +R E P+ ES+ + A + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGESLLALSKALQCSP 61 Query: 70 C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 L + E + + + + W Sbjct: 62 DYLLKGDLSQTNVAYHSRHEPRGSYPLISWVSAGQWMEAVEPYHKRAIENW--------- 112 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179 H+ Q SM +G I++++ ++ G ++ + Sbjct: 113 --HDTTVDCSEDSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 170 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ GR L LN YP+ + + + I ++ Sbjct: 171 ATFKKLVMDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208 >gi|117925374|ref|YP_865991.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp. MC-1] gi|171460783|sp|A0L9E2|LEXA_MAGSM RecName: Full=LexA repressor gi|117609130|gb|ABK44585.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp. MC-1] Length = 231 Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 28/224 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIEGRNRWPSTES 57 MT S ++I + I +R L P+ +A G+ P++ + ++ +G R Sbjct: 19 MTP-SQERIMQVIRNAIDRDGLPPTVKEIAEALGMKTPSAHEQVQKLVKKGFIR------ 71 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + +P+ +G + G Sbjct: 72 --RTPRKARSIEIVEQSPEEEPVEKKPDVARLVPVPIIGEVAAGIPILAVENHIGEL--- 126 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + K + SM+ +GD +++ GD ++ Sbjct: 127 ---------LMDSRTARGPCFALKVKGDSMIDAEIFEGDYVVVRHQALAENGDIVVAILD 177 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 G+ K L +I+L N Y V DI + ++L Sbjct: 178 -GEATVKRLY-ISEETIELRPENRSYQPIVVPPGGDIRILGKVL 219 >gi|26990601|ref|NP_746026.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24985584|gb|AAN69490.1|AE016583_14 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 215 Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 18/215 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA---A 64 ++ + I NLT LA + G+D TS + +R +G + S+ + A A Sbjct: 2 ELKDRIKAARAHANLTQGQLATQVGMDQTSISNLERGKSQGTSYIAQIASVCGVSALWLA 61 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 G + I ++ G+ G++ G Sbjct: 62 EGTGSMLHSVSNVMPGPPIISPTRRIEIVGTAQLGNDGYWVGLDVAEGWVETW------- 114 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + + SM P R G I + ++ G+ +++ G + K Sbjct: 115 -------SRDEDAYALRLKGDSMAPAIRSGWIAVCEPNHRLVPGEYVMVTTVDGQSMVKE 167 Query: 185 LISRRGRSIDLMSLNCCY-PVDTVEMSDIEWIARI 218 L+ ++L S+N Y + +DIE I + Sbjct: 168 LLFENEEGVNLASVNAAYGERRVIAWADIEKIHYV 202 >gi|170723210|ref|YP_001750898.1| putative phage repressor [Pseudomonas putida W619] gi|169761213|gb|ACA74529.1| putative phage repressor [Pseudomonas putida W619] Length = 248 Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 71/249 (28%), Gaps = 34/249 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + RH L+P+ L R+ G+ ++ ++ + PS + K Sbjct: 1 MQAMQKRNVATVLRELLARHGLSPTELHRRTGVPQSTLSRILSE----KIADPSDRHVSK 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL------------LYFPPSGSGGFFDSGV 108 I + QL S F Sbjct: 57 IADYFGVSTEQLRGRAELGASREAALPAHGHADLSDISLWDDETPVEDDEVSVPFLREVE 116 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSA 162 G+ + E G +++ + SMLP+ R G + +N+ Sbjct: 117 LAAGSGRFVIEESERARLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNTG 176 Query: 163 I----QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT------VEMSDI 212 + GD L G + K + I L S N D ++ I Sbjct: 177 KCSIGDIIDGD-LYAINHNGQLRVKQVYRLPTG-IRLRSFNRDEHPDEDYSFQLLQEEQI 234 Query: 213 EWIARILWA 221 + + W Sbjct: 235 SLLGHVFWW 243 >gi|85373679|ref|YP_457741.1| prophage MuMc02-like, S24 family peptidase [Erythrobacter litoralis HTCC2594] gi|84786762|gb|ABC62944.1| prophage MuMc02-like, peptidase, family S24 [Erythrobacter litoralis HTCC2594] Length = 211 Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 15/217 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E +DR+ + + ++R G +P + + G R E + Sbjct: 2 EHVREELDRLILKSGYGYASISRLLGRNPAYVQQFIKR---GSPRKLDDEDRKTLACFFG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + V + G E Sbjct: 59 VD--------EQVLGGPANPVTDGMVEIPVLDVEASAGFGAVAASETAHTRFGFDERWLR 110 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185 H A + + SM P GD ++++++ D + + +V K + Sbjct: 111 HLTS-AKSASLSIVGVKGDSMEPTLSDGDEVLVDASDHGSRLRDGIYVLRSDDALVVKRI 169 Query: 186 ISRRGRS-IDLMSLNCCYPV-DTVEMSDIEWIARILW 220 + G I + S N YP ++ S++ + R++W Sbjct: 170 AIKPGGRQITIASDNPAYPTWYDMDRSEVHVVGRVIW 206 >gi|315925034|ref|ZP_07921251.1| LexA repressor 1 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621933|gb|EFV01897.1| LexA repressor 1 [Pseudoramibacter alactolyticus ATCC 23263] Length = 219 Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 9/216 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ I + + ++ S LA G + +S K + I+ I +I A Sbjct: 3 DLYKNIKKRRQELKISQSKLAELVGYTNRSSIAKIEAGKID-----LPQSKIVEIAEALR 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRS 125 T +L+ + + + G P G V + Sbjct: 58 TTPKELMGWEDEKAEIKKINWSDNVVPMAINRDVVSIPVLGSVPAGVPVEAVEDIIGTIE 117 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 A + + TSM P+Y +GD +++ + G +I D K + Sbjct: 118 IPREWLAGGAEFIGLRVTGTSMYPMYLEGDTVVIEIKHDCDSGQDAIIYVNGYDATLKTV 177 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219 + +I L N +P T D IE + ++ Sbjct: 178 VKNDDGTITLKPRNPEWPTKTYGPGDDPIEILGPVV 213 >gi|254465213|ref|ZP_05078624.1| LexA repressor [Rhodobacterales bacterium Y4I] gi|206686121|gb|EDZ46603.1| LexA repressor [Rhodobacterales bacterium Y4I] Length = 233 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 62/229 (27%), Gaps = 12/229 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + +R + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRLQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I ++ + + + + + G G Sbjct: 61 ARAIEILRLPDSLG-GTAEPQGFAPRVIDGGQASPRAAAAADPMRLAAIELPVMGRIAAG 119 Query: 113 NKWNTVGVPEIRSPHNGIYAIQ-TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + + G Q + + SM GDI+++ A + GD Sbjct: 120 VPIEAISQVSHQVAVPGGMISPNGQHYALEVKGDSMIEAGINDGDIVVIREADTADNGDI 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + G I L + N Y ++ R++ Sbjct: 180 VVALVEGQEATLKYYQRQ-GGMIALEAANPVYETRRYREDQVQVQGRLV 227 >gi|254710220|ref|ZP_05172031.1| LexA repressor [Brucella pinnipedialis B2/94] gi|256031714|ref|ZP_05445328.1| LexA repressor [Brucella pinnipedialis M292/94/1] gi|261317778|ref|ZP_05956975.1| LexA repressor [Brucella pinnipedialis B2/94] gi|265988809|ref|ZP_06101366.1| LexA repressor [Brucella pinnipedialis M292/94/1] gi|261297001|gb|EEY00498.1| LexA repressor [Brucella pinnipedialis B2/94] gi|264661006|gb|EEZ31267.1| LexA repressor [Brucella pinnipedialis M292/94/1] Length = 240 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 57/235 (24%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTT------------EKKEKEIPLLYFPPSGSGG-FFD 105 + L L + + P + + Sbjct: 61 ARALEVLRLPDSIAPGLSPQKKFAPSVIEGNLGKVASVQPVRPAPAPQNSEAPATVSVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GD +I+ Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K SI L + N Y + +++ Sbjct: 181 ANPGEIVVALVDEEEATLKRFRREGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234 >gi|22296545|ref|NP_680505.1| CI like protein [Lactobacillus phage A2] gi|6599314|emb|CAB63660.1| CI like protein [Lactobacillus phage A2] Length = 224 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 21/228 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ +I + ++ + R ++ S LAR+ + +S ++ R + K Sbjct: 1 MKTNDEIIKTLNDLRNREGISISELARRVDMAKSSVSRYFNGT-----REFPLNYVDKFA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 +A T + L KK Y P S G + T + T+ +P+ Sbjct: 56 SAL-HTTPESLIGVSPVDPFKVKKLNVHSYPYIPAEISAGILCNVDPLTSDDVETIQLPD 114 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGD 179 G YA + SM G ++ + + GD ++ Sbjct: 115 S---VMGRYAGDSSILMMHINGESMNQTIPDGSLIAVKQYNDIQDLKDGDIVVFADDGDY 171 Query: 180 IVAKVLISRRGRSID-LMSLNCC--YPVD-----TVEMSDIEWIARIL 219 K + R + I + + + +E +I+ I R++ Sbjct: 172 A-VKYFYNDRQKQIVTFIPDSTDKRFSPIMYTYEDLEEENIKIIGRVV 218 >gi|17987123|ref|NP_539757.1| LexA repressor [Brucella melitensis bv. 1 str. 16M] gi|256044800|ref|ZP_05447704.1| LexA repressor [Brucella melitensis bv. 1 str. Rev.1] gi|260565599|ref|ZP_05836083.1| LexA repressor [Brucella melitensis bv. 1 str. 16M] gi|265991224|ref|ZP_06103781.1| LexA repressor [Brucella melitensis bv. 1 str. Rev.1] gi|25453096|sp|Q8YHG1|LEXA_BRUME RecName: Full=LexA repressor gi|17982786|gb|AAL52021.1| lexa repressor [Brucella melitensis bv. 1 str. 16M] gi|260151667|gb|EEW86761.1| LexA repressor [Brucella melitensis bv. 1 str. 16M] gi|263002008|gb|EEZ14583.1| LexA repressor [Brucella melitensis bv. 1 str. Rev.1] Length = 240 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105 + L L E + + Sbjct: 61 ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GD +I+ Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTIIIKRGDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K SI L + N Y + +++ Sbjct: 181 ANPGEIVVALVDEEEATLKRFRREGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234 >gi|304322192|ref|YP_003855835.1| LexA repressor [Parvularcula bermudensis HTCC2503] gi|303301094|gb|ADM10693.1| LexA repressor [Parvularcula bermudensis HTCC2503] Length = 229 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 58/222 (26%), Gaps = 8/222 (3%) Query: 3 SFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + K+ + I ++PS K LD S + R R K Sbjct: 1 MLTEKQRALLMFIHDRTTETGVSPSFEEMKEALDLKSKSGIHRLITALEERGFIRRLAHK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 A + + + + + P P S G G Sbjct: 61 ARALEVVRLPENVGAAPRPQPSAPFAPRVIDGSRPTPPPPASDLTEISVLGKIAAGTPIT 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + R + + SM GD +I+ GD ++ Sbjct: 121 AIQHEQARVQVPPSMLRSGEHFALEVAGDSMIEAGIFDGDTVIIQRCDDATNGDIVVALV 180 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K L +RG SI L N Y ++ R Sbjct: 181 EDEEATLKYL-RKRGNSIALEPANAAYETRIFGADQVKVQGR 221 >gi|118468004|ref|YP_887073.1| LexA repressor [Mycobacterium smegmatis str. MC2 155] gi|171472978|sp|A0QVY5|LEXA_MYCS2 RecName: Full=LexA repressor gi|71360996|emb|CAJ19247.1| LexA protein [Mycobacterium smegmatis] gi|118169291|gb|ABK70187.1| LexA repressor [Mycobacterium smegmatis str. MC2 155] Length = 243 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 22/219 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 + I E I PS + GL TS ++ + +G R Sbjct: 36 QRTILEVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVD 95 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + A ++ + G + +P+L +G + +P Sbjct: 96 VRAADDPAAAAVVTTDVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLP 149 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM+ GD +++ + GD + G+ Sbjct: 150 RELVG-------EGSLFLLKVVGDSMVDAAICDGDWVVVRQQNVADNGDIVAAMID-GEA 201 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K RG+ + LM N Y ++ + +++ Sbjct: 202 TVKTFKRARGQ-VWLMPHNPAYDPI--PGNEAAVLGKVV 237 >gi|326623794|gb|EGE30139.1| regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 231 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ N+ + LA G+D + ++ + G+ + + +++ ++ Sbjct: 2 NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLGV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117 I +L S G T K GN Sbjct: 58 DIAELFT-SDSKGNTVCKHSDMRKDSDNVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + ++ + + SM P GD++ ++ +I GD + + Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y ++ ++L SQ Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223 >gi|307700848|ref|ZP_07637873.1| repressor LexA [Mobiluncus mulieris FB024-16] gi|307613843|gb|EFN93087.1| repressor LexA [Mobiluncus mulieris FB024-16] Length = 251 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 67/249 (26%), Gaps = 34/249 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS------KRFGIEGRN 50 M+ + +++ + + R++ + PS LA GL S + ++ + Sbjct: 1 MSDLTKRQREVLDTLYRLSRELSYPPSVRELASAMGLSSPSSVQHHLEVLVEKGYLRRVP 60 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 P K+ T ++ + + ++ + P Sbjct: 61 NQPRALEFVKLPEGTPAATTEMAPHAPEAPKVYSETQRNNQNNSSLKTTENISATIHTIP 120 Query: 111 TGNK-------------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150 G + E ++ + + SM Sbjct: 121 IGVADTADSNAIPLVGRIAAGIPITAEELVEDTFMLPRLFTGAGELFMLEVNGESMRDAA 180 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD +++ + + GD + G+ K + I L+ N + Sbjct: 181 IMNGDWVVVRAQNEARNGDIV-AAMLEGEATVKEFSRDK-GHIWLLPHNPSFEPI--PGD 236 Query: 211 DIEWIARIL 219 + +++ Sbjct: 237 GATILGKVV 245 >gi|269125827|ref|YP_003299197.1| SOS-response transcriptional repressor, LexA [Thermomonospora curvata DSM 43183] gi|268310785|gb|ACY97159.1| SOS-response transcriptional repressor, LexA [Thermomonospora curvata DSM 43183] Length = 229 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 25/224 (11%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGR-NRWPSTE 56 + ++ + E I +R PS + GL TS ++ + +G R P+ Sbjct: 17 LTQRQRMVLEVIRDSVQRRGYPPSMREIGEAVGLTSTSSVSHQLRTLQRKGYLRRDPNRP 76 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ + ++G K +PL+ +G + + Sbjct: 77 RAVEVRMPEGAPVRAAGTAASAEGAEAAPKAAMVPLVGRIAAGGPI------LAEESVED 130 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 +P + + SM GD +++ GD + Sbjct: 131 VFALPRQLVG-------EGTHFLLQVSGDSMIEAAIADGDWVVVRQQPVAENGDIVAAMI 183 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + I LM N Y + + R++ Sbjct: 184 D-GEATVKTFKRKE-GHIWLMPQNKAYDPI--PGDEATILGRVV 223 >gi|23505482|ref|NP_700411.1| regulatory protein [Salmonella phage ST64B] gi|168822352|ref|ZP_02834352.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|23379229|gb|AAL25916.1| Sb38 [Salmonella phage ST64B] gi|205341260|gb|EDZ28024.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261247208|emb|CBG25032.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994039|gb|ACY88924.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158553|emb|CBW18064.1| predicted bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320086315|emb|CBY96088.1| 26 kDa repressor protein Regulatory protein CI [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|323130316|gb|ADX17746.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988930|gb|AEF07913.1| hypothetical protein STMUK_2020 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 231 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 70/229 (30%), Gaps = 20/229 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ N+ + LA G+D + ++ + G+ + + +++ ++ Sbjct: 2 NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLGV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117 I +L G T K GN Sbjct: 58 DIAELFT-SDPKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + ++ + + SM P GD++ ++ +I GD + + Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y ++ ++L SQ Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223 >gi|299067105|emb|CBJ38301.1| putative phage repressor [Ralstonia solanacearum CMR15] Length = 265 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 60/247 (24%), Gaps = 42/247 (17%) Query: 14 DRMAERHNL-TPSGLARKAGLDPTSFNKSK-RFGIEG----------------RNRWPST 55 + E L T + +AR + R +G Sbjct: 10 EAARELKGLETQAEVARALNFSQQRVKNWEARGMSKGGMLRAQEIFGCSATWLETGRLPM 69 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------G 102 E++ + + S + + + P + Sbjct: 70 ETVKQKSDSHQMEATLKEQSEASTYNPEPAHTRTLGGVSVRPIVTYESLEELPKESTVLI 129 Query: 103 FFDSGVFPTGNKWNT------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 GN T +P + + K SM P D Sbjct: 130 RRIDVELSAGNGRETWHIEEKEPLPFQADYIRRLDSKPKDLVAAKVNGDSMEPRLFDNDT 189 Query: 157 LILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE- 213 ++++ A + G+++ K L + ++S N Y TV +E Sbjct: 190 VVVDKADTRVPANGGVFALVYAGELLVKRLFRLPDGGLKVVSDNQARYEPVTVGPDQVEH 249 Query: 214 --WIARI 218 I R+ Sbjct: 250 VSIIGRV 256 >gi|199598926|ref|ZP_03212335.1| hypothetical phage-like protein [Lactobacillus rhamnosus HN001] gi|199590126|gb|EDY98223.1| hypothetical phage-like protein [Lactobacillus rhamnosus HN001] Length = 224 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 21/228 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ +I + ++ + R ++ S LAR+ + +S ++ R + K Sbjct: 1 MKTNDEIIKTLNDLRNREGISISELARRVDMAKSSVSRYFNGT-----REFPLNYVDKFA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 +A T + L KK Y P S G + T + T+ +P+ Sbjct: 56 SAL-HTTPESLIGVSPVDPFKVKKLNVHSYPYIPADISAGILCNVDPLTSDDVETIQLPD 114 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGD 179 G YA + SM G ++ + + GD ++ Sbjct: 115 S---VMGRYAGDSSILMMHVNGESMNQTIPDGSLIAVKQYNDIQDLKDGDIVVFADDGDY 171 Query: 180 IVAKVLISRRGRSID-LMSLNCC--YPVD-----TVEMSDIEWIARIL 219 K + R + I + + + +E +I I +++ Sbjct: 172 A-VKYFYNDRQKQIVTFIPDSTDKRFSPIMYTYEDLEEENINIIGKVV 218 >gi|296331000|ref|ZP_06873475.1| LexA repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674518|ref|YP_003866190.1| transcriptional repressor of the SOS regulon [Bacillus subtilis subsp. spizizenii str. W23] gi|296152005|gb|EFG92879.1| LexA repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412762|gb|ADM37881.1| transcriptional repressor of the SOS regulon [Bacillus subtilis subsp. spizizenii str. W23] Length = 205 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 37/227 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++ I I + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL + + + P S + N Sbjct: 61 TKPRAIEILDE--------------------EVDIPQSQVVNVPVIGKVTAGSPITAVEN 100 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +P+ P + SM+ D +I+ N G+ ++ Sbjct: 101 IEEYFPLPDRMVPP------DEHVFMLEIMGDSMIDAGILDKDYVIVKQQNIANNGEIVV 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ + + +++ Sbjct: 155 AMTEDDEATVKRFYK-EDTHIRLQPENPTMEPIILQN--VSILGKVI 198 >gi|329919686|ref|ZP_08276664.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] gi|328937338|gb|EGG33762.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] Length = 231 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 58/227 (25%), Gaps = 28/227 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL---------A 63 ID ++NLT L +K G +S ++ R+P E I +I Sbjct: 12 IDYFRRQNNLTMEELGQKLGKAKSSISRWVSGE-----RYPKIEEIEQIAIFFNTDIYTL 66 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG----------FFDSGVFPTGN 113 + ++ + + + G G Sbjct: 67 IFGFNYNENSKSNILTVYNQLTDIRKHKVYSYAQQQLDEQNSNLNEKSSIYVVGTSAAGE 126 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + D + SM P I+ + + G+ + Sbjct: 127 PIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIGIF 183 Query: 174 KPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K + I L S+N Y + + +++ Sbjct: 184 EINGSAVTCKKYYVDYNSKKIILKSINPKYEPMYFAKDQVRILGKVV 230 >gi|212709591|ref|ZP_03317719.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] gi|212687767|gb|EEB47295.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 29/230 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIF 59 M ++ I E + + E L+ + LA+ G S + R S + Sbjct: 1 MKKI-NEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGE-----RKISADDAL 54 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 I A + +L+ + G F Sbjct: 55 VISEALGVSPAELM------FGDRSDQVVSNYEYPLFSKVQAGAFTENSNA-------YT 101 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLI 173 + + + + SM P + +G +++++ +V+ GD + Sbjct: 102 RSDAIAWIPTAKKASDSAFWLEVEGHSMTAPQGGRPSFPEGMLILVDPEQEVSFGDFCIA 161 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + K LI G + L LN + + + + + I +++ SQ Sbjct: 162 RLMNDEFTFKRLIR-EGETEYLEPLNPRFEMIPINGN-CQIIGKVV-KSQ 208 >gi|261821438|ref|YP_003259544.1| phage repressor [Pectobacterium wasabiae WPP163] gi|261605451|gb|ACX87937.1| putative phage repressor [Pectobacterium wasabiae WPP163] Length = 244 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 64/244 (26%), Gaps = 37/244 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + L+ L G+ + K + T I ++ A + Sbjct: 5 LAERLKTVRTSQGLSQKALGDMVGVSQAAIQKIEGGKAS------QTTKIVELSNALHIR 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L + + + + V + Sbjct: 59 PEWLANGEGPMRSDRVVRSLQESSIPPTSEWGTVSAWDSTTELSKDEVEVPFLKDIEFAC 118 Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163 G IQ++D SM P+ G + +++ Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178 Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + +L + G K L + G + + S N + + S++E I R+ Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLVIHSFNRD-TDEETDESEVEIIGRV 237 Query: 219 LWAS 222 W S Sbjct: 238 FWYS 241 >gi|153009375|ref|YP_001370590.1| LexA repressor [Ochrobactrum anthropi ATCC 49188] gi|166224638|sp|A6X0K7|LEXA_OCHA4 RecName: Full=LexA repressor gi|151561263|gb|ABS14761.1| SOS-response transcriptional repressor, LexA [Ochrobactrum anthropi ATCC 49188] Length = 239 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 56/234 (23%), Gaps = 16/234 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + + PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTT------------EKKEKEIPLLYFPPSGSGGFFDS 106 + L L SG+ Sbjct: 61 ARALEVLRLPDSIAPGLNAQKKFAPSVIEGSLGKTPPPPARPAPVATNDDTSGTVSVPVM 120 Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165 G G + + + + + SM+ GD +I+ Sbjct: 121 GRIAAGVPISAIQNQTHSLSLPPEMIGAGEHYALEVRGDSMIDAGIFDGDTVIIKRGDSA 180 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K + SI L + N Y + +++ Sbjct: 181 NPGEIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVRVQGKLV 233 >gi|322714235|gb|EFZ05806.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 231 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ N+ + LA G+D + ++ + G+ + + +++ ++ Sbjct: 2 NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLGV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117 I +L S G T K GN Sbjct: 58 DIAELFT-SDSKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + ++ + + SM P GD++ ++ +I GD + + Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y ++ ++L SQ Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223 >gi|9635515|ref|NP_059606.1| C2 [Enterobacteria phage P22] gi|62362268|ref|YP_224193.1| gp55 [Enterobacteria phage ES18] gi|168240083|ref|ZP_02665015.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451869|ref|YP_002044323.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|59800201|sp|P69202|RPC2_BPP22 RecName: Full=Repressor protein C2 gi|15655|emb|CAA24470.1| unnamed protein product [Enterobacteria phage P22] gi|1143409|emb|CAA60873.1| c2 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|8439602|gb|AAF75024.1| repressor protein [Enterobacteria phage P22] gi|28394307|tpg|DAA01021.1| TPA_inf: prophage repressor [Enterobacteria phage P22] gi|58339111|gb|AAW70526.1| gp55 [Enterobacteria phage ES18] gi|169658888|dbj|BAG12645.1| prophage repressor [Enterobacteria phage P22] gi|194410173|gb|ACF70392.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340367|gb|EDZ27131.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 216 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 67/220 (30%), Gaps = 28/220 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++ + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALSKALQCSP 61 Query: 70 C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 L + E + + + + W Sbjct: 62 DYLLKGDLSQTNVAYHSRHEPRGSYPLISWVSAGQWMEAVEPYHKRAIENW--------- 112 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179 H+ Q SM +G I++++ ++ G ++ + Sbjct: 113 --HDTTVDCSEDSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 170 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ GR L LN YP+ + + + I ++ Sbjct: 171 ATFKKLVMDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208 >gi|209552478|ref|YP_002284393.1| putative repressor cI [Pseudomonas phage PAJU2] gi|209528751|dbj|BAG75043.1| putative repressor cI [Pseudomonas phage PAJU2] Length = 234 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 88/230 (38%), Gaps = 22/230 (9%) Query: 1 MTSFSHKKIWEAIDRMAE-RHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + S K + + + R +L L++++G+ ++ ++ R + + ++I Sbjct: 13 MMADSRKILANNLKYLMNCRDDLDNQGKLSKRSGVAQSTISRIVRGDSDTGV--DTLDAI 70 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKE-----IPLLYFPPSGSGGFFDSGVFPTGN 113 ++ + + + G+ T K +PL+ + +G P G+ Sbjct: 71 ARVFKVDSSDLVDAGLIDKLQGQNTNIKGTSGLTDPVPLISWVQAGMFTEAIDNFAP-GD 129 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + P S + SMLP YR G+I++++ + G +++ Sbjct: 130 AEELLPCPFPHSER---------SFALRVHGESMLPDYRDGEIILVDPDLAYKHGSDVVV 180 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARILWAS 222 + G K + + + LM+LN +P +E D ++ AS Sbjct: 181 RTPDGSTTFKRIQITQDGTY-LMALNPSFPSRYIEIPEDTRICG-VVIAS 228 >gi|83593233|ref|YP_426985.1| LexA repressor [Rhodospirillum rubrum ATCC 11170] gi|123725964|sp|Q2RT47|LEXA_RHORT RecName: Full=LexA repressor gi|83576147|gb|ABC22698.1| SOS-response transcriptional repressor, LexA [Rhodospirillum rubrum ATCC 11170] Length = 251 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 62/246 (25%), Gaps = 30/246 (12%) Query: 3 SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKS-----KRFGIEGRNRW 52 + K+ + ID+ + ++PS + GL S ++ +R ++ Sbjct: 1 MLTRKQYLLLSFIDQRLKLSGVSPSFDEMKDALGLKSKSGIHRLIKGLEERGFLKRLPHR 60 Query: 53 PSTESIFKI------------------LAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 + ++ + + P + Sbjct: 61 ARALEVLRLPCNLTFDGDGEALDDGQPAPLFGGPLPETGFSPQVIRGNFTPTLPSTQVPQ 120 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153 + S G G + P + + + SM Sbjct: 121 VLFTESISLPLLGKIAAGTPIAALIDPTSSIDVPASMVRGGEHFALRIEGDSMIEAGILS 180 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 GD+ ++ + G ++ + K L + SI L N + + Sbjct: 181 GDLAVVRRCDEAENGTVIVALVDNEEATLKRLRRKGA-SIALEPANRAFKTQIYGPDRVR 239 Query: 214 WIARIL 219 R++ Sbjct: 240 IQGRLV 245 >gi|223986049|ref|ZP_03636078.1| hypothetical protein HOLDEFILI_03384 [Holdemania filiformis DSM 12042] gi|223961999|gb|EEF66482.1| hypothetical protein HOLDEFILI_03384 [Holdemania filiformis DSM 12042] Length = 204 Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 71/218 (32%), Gaps = 33/218 (15%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + +++++T + LA K G T+ K + P + ++ N TI Sbjct: 5 ENLRYLRKKYHITQNDLAEKFGYKSFTTIQKWEDGTS-----MPKMSILQQLADFFNLTI 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPH 127 +L++ G + ++ + + E Sbjct: 60 ERLINQD------------------LTRDEMSGVRVPVLGSVKAGYDHLAEQIVEDYEWV 101 Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + A + SM +GD + ++ V+ G ++ ++ K + Sbjct: 102 SPDEARGGEYFYLDVVGDSMKNARIEEGDRVYIHRQNSVDNGQIAVVLLENDEVTLKRVF 161 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219 + G I L N Y V + D ++ + R++ Sbjct: 162 YKDGDMI-LQPENDAYEPIVVPLKDVMDRRVQILGRLV 198 >gi|71648700|sp|Q5FNN8|LEXA_GLUOX RecName: Full=LexA repressor Length = 238 Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 58/241 (24%), Gaps = 31/241 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSK---------- 42 M + ++ ID R +PS L K+G+ + + Sbjct: 1 MLTRKQHQLLLYIDDHLRRTGYSPSFDEMKDALELRSKSGIHR-LISALEERGFLRRHHH 59 Query: 43 RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT---EKKEKEIPLLYFPPSG 99 R R P + T + G E P Sbjct: 60 RARALEVLRLPHMGTEAPAATGTGTAFVPAVLNQGQTGLEGAFSEASVANDRQTVSIPLY 119 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILI 158 + + + + VP + SM GDI I Sbjct: 120 GRIAAGLPIEAMQDDSDRIDVPVSLLGT-------GEHYALTVAGDSMIEAGILDGDIAI 172 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + G ++ ++ K L R G I L + N Y + R+ Sbjct: 173 IRRRETAENGQIIVALIDEQEVTLKKLRRR-GSMIALEAANRDYETRIFPAERVHIQGRL 231 Query: 219 L 219 + Sbjct: 232 V 232 >gi|118463995|ref|YP_882791.1| LexA repressor [Mycobacterium avium 104] gi|254776054|ref|ZP_05217570.1| LexA repressor [Mycobacterium avium subsp. avium ATCC 25291] gi|171472974|sp|A0QIQ3|LEXA_MYCA1 RecName: Full=LexA repressor gi|118165282|gb|ABK66179.1| LexA repressor [Mycobacterium avium 104] Length = 232 Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 59/223 (26%), Gaps = 22/223 (9%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 S + ++ I I PS + GL TS + +E + Sbjct: 21 PSLTERQRTILNVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERK------GY 74 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + +D + T +P F P + + Sbjct: 75 LRRDPNRPRAVDVRGVDDDVAAPATEVAGSDALPEPTFVPVLGRIAAGGPILAEEAVEDV 134 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 +P K SM GD +++ + GD + Sbjct: 135 FPLPRELVG-------DGTLFLLKVVGDSMVEAAICDGDWVVVRQQHVADNGDIVAAMID 187 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K G + LM N + +D + +++ Sbjct: 188 -GEATVKTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 226 >gi|85708240|ref|ZP_01039306.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. NAP1] gi|85689774|gb|EAQ29777.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. NAP1] Length = 211 Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 15/217 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E +DR+ + + ++R G +P + + G R E + Sbjct: 2 EHVREELDRLILKGGYGYASISRLLGRNPAYVQQFIKR---GSPRKLDDEDRKTLACFFG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + V + G E Sbjct: 59 VD--------EQVLGGPANPVTDGMVEIPVLDVEASAGFGAVAASETAHTRFGFDERWLR 110 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185 H A + + SM P GD ++++++ D + + +V K + Sbjct: 111 HLTS-AKSASLSIVGVKGDSMEPTLSDGDEVLVDASDHGSRLRDGIYVLRSDDALVVKRI 169 Query: 186 ISRRGRS-IDLMSLNCCYPV-DTVEMSDIEWIARILW 220 + G I + S N YP ++ S++ + R++W Sbjct: 170 AIKPGGRQITIASDNPAYPTWYDMDRSEVHVVGRVIW 206 >gi|50121363|ref|YP_050530.1| regulator of pectin lyase production [Pectobacterium atrosepticum SCRI1043] gi|49611889|emb|CAG75338.1| regulator of pectin lyase production [Pectobacterium atrosepticum SCRI1043] Length = 244 Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 62/244 (25%), Gaps = 37/244 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + L+ L G+ + K + T I ++ A + Sbjct: 5 LAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS------QTTKIVELSNALHIR 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L + + + + V + Sbjct: 59 PEWLANGGGPMHSDRVVRSLQESSIPPTSKWGTVSAWDNTTKLSEDEVEVPFLKDIEFAC 118 Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163 G IQ++D SM P+ G + +++ Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178 Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + +L + G K L + G + + S N + S++E I R+ Sbjct: 179 KRIIDGKLYAIAQEGSGNDKLKRIKQLYRKPGGLLVIHSFNRD-ADEEAYESEVEIIGRV 237 Query: 219 LWAS 222 W S Sbjct: 238 FWYS 241 >gi|158520251|ref|YP_001528121.1| LexA family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158509077|gb|ABW66044.1| transcriptional repressor, LexA family [Desulfococcus oleovorans Hxd3] Length = 210 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 54/217 (24%), Gaps = 28/217 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++ E +PS A + T+ ++ K+L Sbjct: 9 QQQVLEYFQHEIAETGASPSLRQAADALSVSHTAISQ-----------------ALKLLE 51 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + P ++ T+ + Sbjct: 52 KKGYITRHGRYSRDIHVLNPMNQSAGMHRWREIPVIGAITAGLPMYAQQEWEGTLVLDRS 111 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P + + + SM GD++I G+ ++ + Sbjct: 112 CFPGD-------NLFALRVKGDSMKDAAILDGDLVICEPRQFAENGEIVVALVNGEEATV 164 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R+ I+L N Y + D+ +++ Sbjct: 165 KRFFKRQD-HIELKPENPAYAPLKLMFGDVLIQGKVI 200 >gi|269215577|ref|ZP_06159431.1| repressor LexA [Slackia exigua ATCC 700122] gi|269131064|gb|EEZ62139.1| repressor LexA [Slackia exigua ATCC 700122] Length = 232 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 17/222 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFN-KSKRFGIEGRNRWPSTES--I 58 +++++ I + H + P+ +AR L P++ + +G +S + Sbjct: 15 KQQEVYDFIVSSMKEHGIAPTIRDIARGLKLSSPSTVHVHLANLETKGYIHRDPLKSRCM 74 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + Q + +D + P + N T+ Sbjct: 75 TVLHEEDLMQPGQPASIHETDSGFGSVGTGGFSNIVTLPVVGNVAAGQPILAEQNITETI 134 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + SM+ + GD +++ GD ++ Sbjct: 135 PLPTEIVG-------DGSSFLLQVRGESMIEIGINDGDFVVVQEQPTARNGDVVVAIID- 186 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R I L N V D+ +++ Sbjct: 187 DGATVKTYYRERD-HIRLQPENSAMEPIIV-RDDVSIAGKVV 226 >gi|31793892|ref|NP_856385.1| LexA repressor [Mycobacterium bovis AF2122/97] gi|121638595|ref|YP_978819.1| LexA repressor [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991087|ref|YP_002645776.1| repressor [Mycobacterium bovis BCG str. Tokyo 172] gi|31619486|emb|CAD94924.1| REPRESSOR LEXA [Mycobacterium bovis AF2122/97] gi|121494243|emb|CAL72721.1| Repressor lexA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774202|dbj|BAH27008.1| repressor [Mycobacterium bovis BCG str. Tokyo 172] Length = 217 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 20/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + I PS + GL TS + +E + + + + Sbjct: 12 QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 71 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L + G + P+L +G + +P Sbjct: 72 VRGADDAALPPVTEVAGSDALPEPTFAPVLGRIAAGGPI------LAEEAVEDVFPLPRE 125 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K SM GD +++ + GD + G+ Sbjct: 126 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 177 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + LM N + +D + +++ Sbjct: 178 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 211 >gi|157166008|ref|YP_001449260.1| putative repressor protein CI [Phage BP-4795] gi|260854732|ref|YP_003228623.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|7239814|gb|AAD04644.2| cI protein [Enterobacteria phage H-19B] gi|49523607|emb|CAD88825.1| putative repressor protein CI [Enterobacteria phage BP-4795] gi|257753381|dbj|BAI24883.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|282935423|gb|ADB03775.1| putative repressor CI [Enterobacteria phage ST2-8624] gi|323157451|gb|EFZ43562.1| peptidase S24-like family protein [Escherichia coli EPECa14] Length = 234 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 8/200 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 +D + T + A K G+ P ++ + E R + K AA L Sbjct: 15 LDEHKKIAGNTNASFADKLGVSP---SQLTQVSGEKSTRNIGDKLARKFEAALGLPNGWL 71 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + L F G + + E R IY+ Sbjct: 72 DLVHDVTPIASCSDS-----LTFVGQVRKGLVRVVGEAILGVDGAIEMTEERDGWLKIYS 126 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM P + G+ +++ +V GD + ++ G + KVL R Sbjct: 127 DDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNMIKVLGYDRDGE 186 Query: 193 IDLMSLNCCYPVDTVEMSDI 212 S+N + T+ + Sbjct: 187 YQFTSINQDHRPITLPYHQV 206 >gi|420538|pir||S32822 repressor protein cI - phage 434 gi|455364|gb|AAA72530.1| cI repressor [unidentified cloning vector] gi|224174|prf||1011238A cI gene Length = 210 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 24/218 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + L + LA+K G S + + + R R+ + ++ +A + Sbjct: 3 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRF-----LPELASALGVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSP 126 + LL+ + G + P + Sbjct: 57 VDWLLNGTSDSNVRFVGHVEPKGKYPLISMVRAGSWCEACEPYDIKDIDEWYDSDVNLL- 115 Query: 127 HNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181 K + SM +G ++++++ + G ++ + Sbjct: 116 --------GNGFWLKVEGDSMTSPVGQSIPEGHMVLVDTGREPVNGSLVVAKLTDANEAT 167 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ G+ L LN +P+ + + + I ++ Sbjct: 168 FKKLVIDGGQKY-LKGLNPSWPMTPINGN-CKIIGVVV 203 >gi|190149742|ref|YP_001968267.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263053|ref|ZP_07544675.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914873|gb|ACE61125.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871679|gb|EFN03401.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 225 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 12/208 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + NL +A S R P+ + + K+L Sbjct: 7 EFVREKMVEKNLKQDDIAEALDRTQGSIGHWLTG-----RRTPNFDDVAKMLNVVGVDQV 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L ++ L G T + TV + E+R+ + + Sbjct: 62 ILNSDGLITTLDNDE-------LEIIGKPKDGIIPVVGEATMGRDETVRLEELRTGYINL 114 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 Y+ + + +SM P + G+ +++ GD +LI G + K L R Sbjct: 115 YSADPDAYAVRGKGSSMEPRIKSGEYIVIEPNTPPMNGDDVLICTIAGQYMIKTLDWHRD 174 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 S+N + + +++ I + Sbjct: 175 GEYRFSSINNAHQPFNLPENEVVNIHTV 202 >gi|111225062|ref|YP_715856.1| LexA repressor [Frankia alni ACN14a] gi|123142679|sp|Q0RDY1|LEXA_FRAAA RecName: Full=LexA repressor gi|111152594|emb|CAJ64335.1| Global regulator (repressor) for SOS regulon (LexA repressor) [Frankia alni ACN14a] Length = 253 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 60/220 (27%), Gaps = 12/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 +K+ E I ER PS + GL TS ++ K +G R P+ + Sbjct: 34 QRKVLEVIRAEVERRGYPPSVREIGEAVGLTSTSSVAHQLKVLEEKGYLRRDPNRPRAME 93 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L+ + + G G Sbjct: 94 VLSPDRPRRKADSGAAAVVSTFPGAAAAPAGVGGEGSAAYVPVL--GRIAAGGPILAEQA 151 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E P + + SM+ GD +++ + G+ + G+ Sbjct: 152 IEDVFPLPKEIVGEGTLFLLRVVGESMINAAICDGDWVVVRQQPVADNGEIVAAMID-GE 210 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L R I L N + + + RI+ Sbjct: 211 ATVKRL-RVRDGKIWLHPENPTFSDI--PGEEATILGRIV 247 >gi|323190855|gb|EFZ76122.1| peptidase S24-like family protein [Escherichia coli RN587/1] Length = 234 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 8/200 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 +D + T + A K G+ P ++ + E R + K AA L Sbjct: 15 LDEHKKIAGNTNASFADKLGVSP---SQLTQVSGEKSTRNIGDKLARKFEAALGLPNGWL 71 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + L F G + + E R IY+ Sbjct: 72 DLVHDVTPIASCSDS-----LTFVGQVRKGLVRVVGEAILGVDGAIEMTEERDGWLNIYS 126 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM P + G+ +++ +V GD + ++ G + KVL R Sbjct: 127 DDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNMIKVLGYDRDGE 186 Query: 193 IDLMSLNCCYPVDTVEMSDI 212 S+N + T+ + Sbjct: 187 YQFTSINQDHRPITLPYHQV 206 >gi|299538331|ref|ZP_07051614.1| LexA repressor [Lysinibacillus fusiformis ZC1] gi|298725918|gb|EFI66510.1| LexA repressor [Lysinibacillus fusiformis ZC1] Length = 205 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 59/227 (25%), Gaps = 37/227 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 M S + I I PS + GL ++ + R +G R P Sbjct: 1 MKKVSKRQEDILAFIKEEVRAKGYPPSVREIGEAVGLASSSTVHGHLARLEQKGFIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL ++ + + P S + N Sbjct: 61 TKPRAIEILEP--------------------EESIQKQQVIHVPLVGKVTAGSPITAIEN 100 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +P+ Q + SM GD++I+ N GD ++ Sbjct: 101 IEEYFPLPDTYGTSED------QLFMLEIMGESMIEAGILDGDLVIVKQKATANNGDIVV 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N V + + +++ Sbjct: 155 AMTAEDEATVKRFFKEKN-HFRLQPENSSMEPIIV--DQVSILGQVV 198 >gi|104774235|ref|YP_619215.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514323|ref|YP_813229.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274945|sp|Q049T1|LEXA_LACDB RecName: Full=LexA repressor gi|123378419|sp|Q1G9M5|LEXA_LACDA RecName: Full=LexA repressor gi|103423316|emb|CAI98157.1| LexA (transcriptional repressor of the SOS regulon) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093638|gb|ABJ58791.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126020|gb|ADY85350.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 206 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 33/224 (14%) Query: 3 SFSHK----KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 +H +I + I E P+ + GL TS +E + Sbjct: 1 MATHDSKQLEILQYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLTRLERKGYLIKDA 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L T+ + P + + + Sbjct: 61 TKPRALEITHAGLD-----------------ALGIKPKDIPVIGVVTAGQPILAVQDVED 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 +P + + + + TSM+ GD +I+ G+ ++ Sbjct: 104 YFPLPPNLA------SDAGELFMLRVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMT 157 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L N + ++ + +++ Sbjct: 158 DDGEATVKRFFK-EDLHYRLQPENDAMDPIILNH--VQILGKVV 198 >gi|291544659|emb|CBL17768.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Ruminococcus sp. 18P13] Length = 208 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 61/217 (28%), Gaps = 21/217 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + + T LA G + K + I E+I K L + Sbjct: 2 NIGERIKTARKEIDKTQQELADAIGTTKQNVYKYENGIITNIPSD-KIEAIAKFLHVSPA 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + D K +F ++ + + Sbjct: 61 YLFGWEEESLYDQFDNIHPIKLKKFPLL----GDIACGEPIFADEDRESYIMADMDIRA- 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 D + + SM+ + GDI+ + V G+ + G+ K + Sbjct: 116 ---------DFCLRAKGDSMINARIQDGDIVFIRKMPMVENGEIAAVIID-GEATLKRVQ 165 Query: 187 SRR-GRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 + L N Y E+++I + + + Sbjct: 166 YYPQKGKLILYPENPNYEPFFYSGEELNEIRILGKAV 202 >gi|240948468|ref|ZP_04752844.1| transcription regulator [Actinobacillus minor NM305] gi|240297209|gb|EER47771.1| transcription regulator [Actinobacillus minor NM305] Length = 239 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 23/228 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I E+ L+ + +A + + ++ + R P I KI Sbjct: 11 IGNRIREQREKLGLSRNEMADRLDVSLSALQNWE-----MNEREPQASMIIKIAEFLGVA 65 Query: 69 ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---- 118 LL S + + + E F+S G V Sbjct: 66 PNYLLTGEQSQPQEAKGIVARAFEALEKERTEQDEVEMLSSFESIEVSAGFGSFNVGVTE 125 Query: 119 ---GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 VP + + +SMLP GD L+++ + + +++ + Sbjct: 126 PDGQVPYDSNLLRNLGVKPKHCGVFWANGSSMLPTIHNGDQLLVDFSKKEVKNNKVYLVQ 185 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD---IEWIARIL 219 + K + ++L+S N Y + + ++ I +++ Sbjct: 186 NGDSVWVKRVKIEWDG-VELISDNKEEYRPIRISADEAQNLQIIGQVV 232 >gi|332970254|gb|EGK09246.1| LexA family repressor/S24 family protease [Kingella kingae ATCC 23330] Length = 206 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 71/210 (33%), Gaps = 17/210 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + L+ + L + AG+ ++ + + R S+ I ++ A T+ Sbjct: 5 ERVKNRRLELGLSQAALGKLAGVPQSTIGQIENG------RNKSSTKILELAHALQTTVE 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L+D + LY P S S + + R+ Sbjct: 59 YLVDGVEPAQKQPSLPNVSEMPTPLYSVPVISWVQAGSWQPVELFDDDDLEYIVCRTK-- 116 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + SM P + +GDI++++ + G ++ + K L+ Sbjct: 117 ----LGKDGYALRVRGDSMQPEFTEGDIIVIDPHGEPRAGSFVIALHD-NETTFKQLVFD 171 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G L LN YP ++ +D + + Sbjct: 172 -GSRPMLRPLNSNYPYLQIKEND-RILGVV 199 >gi|33339176|gb|AAQ14269.1|AF251128_1 LexA [Sinorhizobium meliloti] Length = 238 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 61/232 (26%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + K+ A+ + + S G Sbjct: 61 ARALEVIKLPEAYAGASQVRRGFSPSVIEGSLGKPAAPPPAPKPAPPAEAASVAVPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G + + + + + SM GD +I+ + + Sbjct: 121 IAAGVPISAIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDTVIIRNGSTASP 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K R SI L + N Y ++ R++ Sbjct: 181 GDIVVALIDDEEATLKRFRRRGA-SIALEAANPAYETRIFGPDRVKIKGRLV 231 >gi|121534819|ref|ZP_01666639.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] gi|121306614|gb|EAX47536.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] Length = 215 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 15/216 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + E+ +T +A G+ ++ + R P ++ ++ + Sbjct: 2 LGERLKSLREQKGITQQEMADILGIARGTYAHYEID-----RREPDNATLSRLADFFGVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + LL T+ IP P G + + Sbjct: 57 VDYLLGRDKPKPSITDLFPDAIPADLSNFVPIPIVGTVKAGPNGLAYEE---HLGYEYVD 113 Query: 129 GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD--RLLIKPRTGDIVAKVL 185 + + + SM+ GD+ ++ +V GD +++ + K + Sbjct: 114 KKDVNGAKHIFLQVKGDSMIGEGILPGDLALVKEQPEVYSGDLAVVIVDDIEPEGRIKRV 173 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218 + G SI L S N YP + + I + ++ Sbjct: 174 HFK-GDSIVLQSANPSYPPEIFTGEERKKIRIVGKV 208 >gi|15609857|ref|NP_217236.1| LexA repressor [Mycobacterium tuberculosis H37Rv] gi|15842258|ref|NP_337295.1| LexA repressor [Mycobacterium tuberculosis CDC1551] gi|148662561|ref|YP_001284084.1| LexA repressor [Mycobacterium tuberculosis H37Ra] gi|148823909|ref|YP_001288663.1| LexA repressor [Mycobacterium tuberculosis F11] gi|289444262|ref|ZP_06434006.1| LexA repressor [Mycobacterium tuberculosis T46] gi|289448375|ref|ZP_06438119.1| repressor lexA [Mycobacterium tuberculosis CPHL_A] gi|289570896|ref|ZP_06451123.1| repressor lexA [Mycobacterium tuberculosis T17] gi|289575418|ref|ZP_06455645.1| repressor lexA [Mycobacterium tuberculosis K85] gi|289746522|ref|ZP_06505900.1| SOS response repressor protein lexA [Mycobacterium tuberculosis 02_1987] gi|289754822|ref|ZP_06514200.1| SOS regulatory protein LexA [Mycobacterium tuberculosis EAS054] gi|289758849|ref|ZP_06518227.1| repressor lexa [Mycobacterium tuberculosis T85] gi|289762891|ref|ZP_06522269.1| repressor lexA [Mycobacterium tuberculosis GM 1503] gi|298526190|ref|ZP_07013599.1| SOS regulatory protein LexA [Mycobacterium tuberculosis 94_M4241A] gi|1016352|emb|CAA62750.1| lexA [Mycobacterium tuberculosis H37Rv] gi|2182011|emb|CAB09461.1| REPRESSOR LEXA [Mycobacterium tuberculosis H37Rv] gi|13882550|gb|AAK47109.1| SOS regulatory protein LexA [Mycobacterium tuberculosis CDC1551] gi|148506713|gb|ABQ74522.1| LexA repressor [Mycobacterium tuberculosis H37Ra] gi|148722436|gb|ABR07061.1| SOS response repressor protein lexA [Mycobacterium tuberculosis F11] gi|289417181|gb|EFD14421.1| LexA repressor [Mycobacterium tuberculosis T46] gi|289421333|gb|EFD18534.1| repressor lexA [Mycobacterium tuberculosis CPHL_A] gi|289539849|gb|EFD44427.1| repressor lexA [Mycobacterium tuberculosis K85] gi|289544650|gb|EFD48298.1| repressor lexA [Mycobacterium tuberculosis T17] gi|289687050|gb|EFD54538.1| SOS response repressor protein lexA [Mycobacterium tuberculosis 02_1987] gi|289695409|gb|EFD62838.1| SOS regulatory protein LexA [Mycobacterium tuberculosis EAS054] gi|289710397|gb|EFD74413.1| repressor lexA [Mycobacterium tuberculosis GM 1503] gi|289714413|gb|EFD78425.1| repressor lexa [Mycobacterium tuberculosis T85] gi|298495984|gb|EFI31278.1| SOS regulatory protein LexA [Mycobacterium tuberculosis 94_M4241A] gi|326904335|gb|EGE51268.1| repressor lexA [Mycobacterium tuberculosis W-148] gi|328457971|gb|AEB03394.1| repressor lexA [Mycobacterium tuberculosis KZN 4207] Length = 217 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + I PS + GL TS + +E + + + + Sbjct: 12 QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 71 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L + G + +P+L +G + +P Sbjct: 72 VRGADDAALPPVTEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 125 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K SM GD +++ + GD + G+ Sbjct: 126 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 177 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + LM N + +D + +++ Sbjct: 178 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 211 >gi|317121920|ref|YP_004101923.1| SOS-response transcriptional repressor, LexA [Thermaerobacter marianensis DSM 12885] gi|315591900|gb|ADU51196.1| SOS-response transcriptional repressor, LexA [Thermaerobacter marianensis DSM 12885] Length = 201 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 45/229 (19%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51 M + ++I + I PS + GL TS + +R G R Sbjct: 1 MQELTRRQREILDFIKGWVRERGYPPSVREIGEAVGLKSTSTVHTYLAQLERKGYI--RR 58 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 P+ +IL N + + + Sbjct: 59 DPTKPRAIEILDEANVRTRTVPVPLVGQVTAGQP----------------------ILAV 96 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 N + + +P P + + + + SM+ GD +I+ GD Sbjct: 97 ENIEDILPLPADLVP-------EGEVFALRIRGDSMIGAGILDGDYVIVRRQDTAQNGDI 149 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K R I L N V + + + +++ Sbjct: 150 VVAL-LEDEATVKRFYQERDG-IRLQPENPAMEPIRVRHARV--LGKVV 194 >gi|163758692|ref|ZP_02165779.1| peptidase, S24 (LexA) family protein [Hoeflea phototrophica DFL-43] gi|162283982|gb|EDQ34266.1| peptidase, S24 (LexA) family protein [Hoeflea phototrophica DFL-43] Length = 229 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 13/219 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + T A+K G+ + R R PS E + ++ Sbjct: 11 VGERIQSLVGKDQ-TLEQFAQKIGVSSRTLGNYLRGE-----REPSYEFLRRVRTICGAD 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I L+ + R + + + P G + Sbjct: 65 INWLITGEGTAERALAVRGEAPNQVSIPRYAIQASAGDGAVVLSQEIEDF-FTVSPDWLA 123 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + SM P GDIL+L+ + V + + G ++ K L Sbjct: 124 RYLPKGAKAGIIEARGDSMEPTIADGDILLLDFSISSSVVSDGGVFVISVDGALLVKRLQ 183 Query: 187 SRRGRSIDLMSLNCCYP----VDTVEMSDIEWIARILWA 221 I + S N Y I A+++WA Sbjct: 184 LTVDGHILIRSDNDLYEQEKVTREFADERITVHAKVVWA 222 >gi|227875237|ref|ZP_03993379.1| LexA repressor [Mobiluncus mulieris ATCC 35243] gi|227844142|gb|EEJ54309.1| LexA repressor [Mobiluncus mulieris ATCC 35243] Length = 251 Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 34/249 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS------KRFGIEGRN 50 M+ + +++ + + R++ + PS LA GL S + ++ + Sbjct: 1 MSDLTKRQREVLDTLYRLSRELSYPPSVRELASAMGLSSPSSVQHHLEVLVEKGYLRRVP 60 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 P K+ T ++ + + ++ + P Sbjct: 61 NQPRALEFVKLPEGTPVVTTEMAPHAPEAPKVYSETQRNNQNNSSLKTTENISATIHTIP 120 Query: 111 TGNK-------------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150 G + E + + + SM Sbjct: 121 IGVADTADSNAIPLVGRIAAGTPITAEELVEDTFMLPRRFTGAGELFMLEVNGESMRDAA 180 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD +++ + + GD + G+ K + I L+ N + Sbjct: 181 IMNGDWVVVRAQNEARNGDIV-AAMLEGEATVKEFSRDK-GHIWLLPHNPSFEPI--PGD 236 Query: 211 DIEWIARIL 219 + +++ Sbjct: 237 GATILGKVV 245 >gi|21914458|gb|AAM81423.1|AF527608_45 C2 protein [Salmonella phage P22-pbi] Length = 216 Score = 95.2 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 66/220 (30%), Gaps = 28/220 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++ + + L + G+ + ++ +R E P+ E + + A + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGEDLLALSKALQCSP 61 Query: 70 C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 L + E + + + + W Sbjct: 62 DYLLKGDLSQTNVAYHSRHEPRGSYPLISWVSAGQWMEAVEPYHKRAIENW--------- 112 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179 H+ Q SM +G I++++ ++ G ++ + Sbjct: 113 --HDTTVDCSEDSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 170 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ GR L LN YP+ + + + I ++ Sbjct: 171 ATFKKLVMDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208 >gi|313124051|ref|YP_004034310.1| lexa repressor [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280614|gb|ADQ61333.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685931|gb|EGD27995.1| transcriptional repressor LexA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 206 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 33/224 (14%) Query: 3 SFSHK----KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 +H +I + I E P+ + GL TS +E + Sbjct: 1 MATHDSKQLEILQYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLTRLERKGYLIKDA 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L T+ + P + + + Sbjct: 61 TKPRALEITHAGLD-----------------ALGIKPKDIPVIGVVTAGQPILAVQDVED 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 +P + + + + TSM+ GD +I+ G+ ++ Sbjct: 104 YFPLPPNLA------SDAGELFMLRVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMT 157 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L N + ++ + +++ Sbjct: 158 DDGEATVKRFFK-EDLHYRLQPENDAMDPIILNH--VQILGKVV 198 >gi|317495269|ref|ZP_07953639.1| LexA repressor [Gemella moribillum M424] gi|316914691|gb|EFV36167.1| LexA repressor [Gemella moribillum M424] Length = 212 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 57/208 (27%), Gaps = 13/208 (6%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + + N+ + LAR + P+S + + P + + I + L+ Sbjct: 10 KQCLKEKNIKQAELARSTKITPSSISDWSKGKYV-----PKRDKLLAIAEYLSVNPDWLM 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + + G G+ V + E H I Sbjct: 65 GDCDNMFVEEHITSSSDEDSDEYIDNTSKLPILGTICAGDG---VYIEEEYDEHIFIDQG 121 Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191 D + + SM GD++ + V G + + K + + Sbjct: 122 MGADFALRVKGDSMIEAGIFDGDLVFIRQQSSVRNGKIAAVRLTEWNEASLKKIFVKNDN 181 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I L N Y ++E I + Sbjct: 182 VI-LYPCNPDYEPIV--TRNVEIIGECV 206 >gi|320006295|gb|ADW01324.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus phage Sha1] Length = 234 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 30/240 (12%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI---F 59 ++ +I + + ++ + NLT S LAR+ + ++ ++ + R ++ Sbjct: 1 MRTNNEIVDTLVKLKDEQNLTLSELARRVNMAKSALSRYFN-----KTREFPLNNVDAFA 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K L T E I + ++KK I + P + + V Sbjct: 56 KALHTTPEYILGFEKDEVAPLTNSDKKLIRINKMLTPDRQQNVYNYADNQLREQNNTIVR 115 Query: 120 VPEIRSPHNGIYA-------------------IQTQDTRHKTQDTSMLPLYRKGDILILN 160 +P + G + + D + SM PL+ I+ + Sbjct: 116 MPRTQIKLLGAVSAGTGEELQDDTTEVDYTGTVPEYDYALQVNGDSMEPLFTDQQIIFVK 175 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + + G ++ G K G +L+SLN Y V ++ + ++ Sbjct: 176 YSEEAFNGQIVIAYVD-GKAYVKKYH-CNGSKCELVSLNSKYDPIDVTGNENFKIKGVVV 233 >gi|154686198|ref|YP_001421359.1| LexA repressor [Bacillus amyloliquefaciens FZB42] gi|166224553|sp|A7Z552|LEXA_BACA2 RecName: Full=LexA repressor gi|154352049|gb|ABS74128.1| LexA [Bacillus amyloliquefaciens FZB42] Length = 206 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 57/226 (25%), Gaps = 34/226 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 MT S ++ I I + PS + GL ++ + R +G R Sbjct: 1 MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIR--- 57 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + E+ + + P + N Sbjct: 58 ---------------RDPTKPRAIEVLDEEEVQIPKSQVVNVPVIGKVTAGIPITAVENI 102 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 +P+ P + SM+ D +I+ N G+ ++ Sbjct: 103 DEYFPLPDRMVPPG------EHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVA 156 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + +++ Sbjct: 157 MTEDDEATVKRFYK-EDNYVRLQPENPTMEPIILQN--VSILGKVI 199 >gi|149911913|ref|ZP_01900512.1| putative transcriptional regulator [Moritella sp. PE36] gi|149805006|gb|EDM65034.1| putative transcriptional regulator [Moritella sp. PE36] Length = 250 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 60/246 (24%), Gaps = 33/246 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----NRWPSTESIFKILAAT 65 E I + +T + + ++ K + + + E +FK Sbjct: 4 GEKIKAVRNSLGMTQQKFSEFTDISISTLKKVESGVSNPNIAVIEKIIAKEELFKYSFWL 63 Query: 66 NETICQLLDLP--------------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + + ++ Sbjct: 64 LSERSEPKLGQISPLDVDQIDTSGLHNINVNDRDEVNRPTPIFKNKDKKHIELPFYEISA 123 Query: 112 GNKW----NTVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 P+ S SM P + G ++++N Sbjct: 124 SAGVGLLAEVEERPKTISFEPHWLRNEIGVCPNNVFLMLVDGDSMQPTLKNGSMIMVNRD 183 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-----EMSDIEWIAR 217 + D + + +++ K L G I + S N Y + + ++ I R Sbjct: 184 VDNLS-DGVYVMRHDNNLLVKRLQMLPGGIIRVKSDNTMYDPWEITKSQLDGEELALIGR 242 Query: 218 ILWASQ 223 ++W Q Sbjct: 243 VVWTGQ 248 >gi|289553495|ref|ZP_06442705.1| repressor lexA [Mycobacterium tuberculosis KZN 605] gi|289438127|gb|EFD20620.1| repressor lexA [Mycobacterium tuberculosis KZN 605] Length = 216 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + I PS + GL TS + +E + + + + Sbjct: 11 QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 70 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L + G + +P+L +G + +P Sbjct: 71 VRGADDAALPPVTEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 124 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K SM GD +++ + GD + G+ Sbjct: 125 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 176 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + LM N + +D + +++ Sbjct: 177 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 210 >gi|284048358|ref|YP_003398697.1| transcriptional repressor, LexA family [Acidaminococcus fermentans DSM 20731] gi|283952579|gb|ADB47382.1| transcriptional repressor, LexA family [Acidaminococcus fermentans DSM 20731] Length = 215 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 58/217 (26%), Gaps = 29/217 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +I + I + + PS + GL ++ ++ K+ Sbjct: 19 QSQILDFIRQYIFNNGYPPSVREIGSAVGLSSSASVH---------------NNLKKLAE 63 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + + ++K + + + G + N +T +P Sbjct: 64 AGFVSWDPEKPRTYGLREEISWRKKSMVPVPLVGAVHAG---DPMLAVENIEDTYPIPLD 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + SM D + + GD ++ + Sbjct: 121 LIG------CSEDVFMMVVEGDSMKNAGILDHDYVFVRKQNYATNGDIVVALFNGEETTI 174 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N YP V +IE +++ Sbjct: 175 KRYFREL-KQIRLQPENDAYPPI-VGTDNIEIKGKVI 209 >gi|308069329|ref|YP_003870934.1| LexA repressor [Paenibacillus polymyxa E681] gi|310642375|ref|YP_003947133.1| sos-response repressor and protease lexa [Paenibacillus polymyxa SC2] gi|305858608|gb|ADM70396.1| LexA repressor [Paenibacillus polymyxa E681] gi|309247325|gb|ADO56892.1| SOS-response repressor and protease LexA [Paenibacillus polymyxa SC2] Length = 208 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 32/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M+ S + I E I PS + GL ++ + R +G R Sbjct: 1 MSKISSRQQAILEFIRNEVRLKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + +L K L T N Sbjct: 61 TK--PRAIELLGQDESDNSNLINYSISRVPVVGKVTAGLPIT-------------ATENI 105 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P+ + + + SM GD +I+ + GD ++ Sbjct: 106 EDYFPLPQH-------FVGEDKIFMLSVVGESMIEAGIANGDYVIVRQQQTADNGDIVVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N + + + + +++ Sbjct: 159 MTDEDEATVKTFYKEKD-HIRLQPENPAFEPLRLTH--VSILGKVV 201 >gi|288817843|ref|YP_003432190.1| putative phage repressor [Hydrogenobacter thermophilus TK-6] gi|288787242|dbj|BAI68989.1| putative phage repressor [Hydrogenobacter thermophilus TK-6] gi|308751440|gb|ADO44923.1| putative phage repressor [Hydrogenobacter thermophilus TK-6] Length = 220 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 67/212 (31%), Gaps = 20/212 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ + L+ LA+ GL + + R S + KI N Sbjct: 16 IGEKLKKLLQEKGLSIYRLAKLTGLTQSGLSMIINNQ-----RAVSPAILRKIAETLNIP 70 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 ++ + + E + P G + + + Sbjct: 71 EVYFIEEEPTKEYPPSPEVIEREYIAIPIITG----------VGAGGEVIT--DDYTLIK 118 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLIS 187 + + + + SM P K +++++ Q+ G L + + + + Sbjct: 119 RTQLPKKTVSAFEVEGDSMEPTIPKDWLVLVDPTDLQLYEGGIFLFASQGNGLFIRRVHK 178 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + +L+ N Y + +I+ + R+L Sbjct: 179 VDNQ-WELVPDNRKYAPQKLT-EEIKVLGRVL 208 >gi|126444083|ref|YP_001063360.1| peptidase [Burkholderia pseudomallei 668] gi|126223574|gb|ABN87079.1| helix-turn-helix motif:Peptidase S24, S26A and S26B [Burkholderia pseudomallei 668] Length = 222 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 15/221 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + + + + + S LAR+ G+ + + + E++ K+ +A + Sbjct: 2 KTLADRLRAALQEAQMNQSELARRVGVTRGAVSFWLTSATT----SLAGENLLKVASALS 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVP 121 + L T ++ +P S TG + + Sbjct: 58 VSPNWLATGRGRMKPATLQEISLQENPEYPAIRRVKIKISAGI-TGYGIEPLEEDHAPIV 116 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 RS + + K SM P GD +++NSA G++V Sbjct: 117 FHRSWYESNGYDPEKLLAIKVAGASMEPGLYDGDWVVVNSADTSPRDGVAFALSFDGEVV 176 Query: 182 AKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219 K L S N Y + D I R++ Sbjct: 177 IKRLFR-TEGHWVAASDNQDKRIYRDRPLN-GDTFIIGRVI 215 >gi|317133873|ref|YP_004089784.1| transcriptional regulator, XRE family [Ruminococcus albus 7] gi|315450335|gb|ADU23898.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 208 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 21/216 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + I + L+ + LA K G +S NK + G R + KI Sbjct: 3 ETIGKRIKEARIKKGLSQTELAGKLGYKSRSSINKIETGG-----RDIPKSQVVKIAEIL 57 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + T L+ S +EK + + +G +G+ + Sbjct: 58 DLTPSYLMGWENSPAHNILSREKIHMIPVYNSIDAGFKTYDSSDISGHLPLYIENDSDV- 116 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 ++ SM P GD ++++ V+ G ++ + K + Sbjct: 117 ---------KNTICVTVREQSMSPKIEDGDTIVVHRQNHVDNGKIAIVMIGEN-TIVKRV 166 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218 R + L S N YP +E S+ ++ + + Sbjct: 167 DFNRD-RLILTSYNPEYPPMIIEGSELTNVKVVGLV 201 >gi|239832032|ref|ZP_04680361.1| LexA repressor [Ochrobactrum intermedium LMG 3301] gi|239824299|gb|EEQ95867.1| LexA repressor [Ochrobactrum intermedium LMG 3301] Length = 248 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 61/236 (25%), Gaps = 18/236 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + ++ I + + PS K LD S + R R P+ Sbjct: 8 MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 67 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-------- 107 ++L + L E + P P + + Sbjct: 68 ARALEVLRLPDSIAPGLNAQKKFAPSVIEGSLGKAPPPPPPARPAPVATNDDTSATVSVP 127 Query: 108 ---VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163 G + + + + + SM+ GD +I+ Sbjct: 128 VMGRIAAGVPISAIQNQTHSLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGD 187 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K + SI L + N Y + +++ Sbjct: 188 SANPGEIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVRVQGKLV 242 >gi|169630121|ref|YP_001703770.1| LexA repressor [Mycobacterium abscessus ATCC 19977] gi|229621222|sp|B1MCZ5|LEXA_MYCA9 RecName: Full=LexA repressor gi|169242088|emb|CAM63116.1| Probable repressor LexA [Mycobacterium abscessus] Length = 224 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 55/217 (25%), Gaps = 19/217 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I E I PS + GL TS + +E + + + + Sbjct: 18 QRTILEVIRASVNERGYPPSIREIGDAVGLTSTSSVAHQLRTLEQKGFLRRDPNRPRAVD 77 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + E F P + + +P Sbjct: 78 VRGIDDAGTPSATTDVIGSGDLPE-----PTFVPVLGRIAAGGPILAEEAVEDVFPLPRE 132 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + K SM+ GD +++ + GD + G+ Sbjct: 133 LVG-------EGSLFLLKVVGESMVDAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 184 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + LM N + +D + +++ Sbjct: 185 KTFKR-TSGQVWLMPHNPLFEPI--PGNDAAILGKVV 218 >gi|255067367|ref|ZP_05319222.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC 29256] gi|255048337|gb|EET43801.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC 29256] Length = 218 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +K I + I + + T LA+K + + ++ + + P+ E+++++ Sbjct: 2 NKTIGQRIRQKRKEFKWTQQELAKKLKDISHVAISQWESNTTK-----PNAENLYELSQV 56 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + LL E + + + D N + P Sbjct: 57 LGCDLGWLLK------GEGEDTNTNVVFIEDSNNRKIPVLDVAQIENWNLRIPIPNPIKG 110 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + K SM P + +GD+++++ + G+ ++ + + K Sbjct: 111 AYLMSNIHDPNKCFALKISGDSMNPDFVEGDLIVVDIEQKPEPGEFVVARIDKDVVFRKY 170 Query: 185 LISR----RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L LN +P + IE I ++ Sbjct: 171 QVVSSVNGEPECFSLSPLNRDFPPFSSSRHTIEIIGTMV 209 >gi|226312895|ref|YP_002772789.1| LexA repressor [Brevibacillus brevis NBRC 100599] gi|254809089|sp|C0ZES6|LEXA_BREBN RecName: Full=LexA repressor gi|226095843|dbj|BAH44285.1| LexA repressor [Brevibacillus brevis NBRC 100599] Length = 207 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 33/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M+ S + I E I + PS + GL ++ + R +G R Sbjct: 1 MSKLSSRQQAIIEFIRKEVRDKGYPPSVREIGEAVGLASSSTVHGHLARLEKKGLIRR-- 58 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T +LL E +P++ +G + Sbjct: 59 --------DPTKPRAIELLSDEDRFQDNFEDSVVRVPVIGKVTAGQPIT------AIEDV 104 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 +P+ + +Y + SM+ GD +I+ N GD ++ Sbjct: 105 EEYFPLPDNIVTSDKVY-------MLRVSGNSMIDAGILDGDYVIVRQQHVANNGDIVVA 157 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + + + +++ Sbjct: 158 MTEEDEATVKRFFKEKN-HFRLQPENATMEPIIL--EHVTILGKVI 200 >gi|268596517|ref|ZP_06130684.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268550305|gb|EEZ45324.1| transcriptional regulator [Neisseria gonorrhoeae FA19] Length = 223 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 18/221 (8%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 A+R N + +R P N+ + + +I D P Sbjct: 3 ADRFNGNQAEFSRAINKAPAQINQWLNGYRNIGD---GVAAQIEIALGLPRGWVDGNDKP 59 Query: 77 FSDGRTTEKKEKEIPLLYFPPS--------GSGGFFDSGVFPTGNKW-NTVG------VP 121 + + I + S F+ GN + + + + Sbjct: 60 GIPVDSIKSNATVIGSVDAWDSKTPLSDDDCEVPFYKDVCLSAGNGFSDEIEDYNGYKLR 119 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 +S SM P++ G L +N+A ++ ++ +G + Sbjct: 120 FSKSTLRRHGINPDDVVCVSADGDSMEPVFPDGATLGINTADKMIKDGKIYAINHSGLLR 179 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 K+L + + S N Y +T + + I R+ W S Sbjct: 180 TKILQKLPDNQVRIKSYNPEYKDETASLDSLTVIGRVFWWS 220 >gi|303251516|ref|ZP_07337691.1| hypothetical protein APP6_0720 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253708|ref|ZP_07535574.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase) [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649636|gb|EFL79817.1| hypothetical protein APP6_0720 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858820|gb|EFM90867.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase) [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 217 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 60/216 (27%), Gaps = 24/216 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-- 68 + + + NL +A G + R P+ + + ++ T Sbjct: 7 QYVREKMQAQNLRQDDIAETMGKTQGAIGHWLTG-----KRTPNFDDVATMINITGIDKV 61 Query: 69 --ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 F + +K +G + + + N + + Sbjct: 62 ILNGDGTIEDFDPNVSVINIKKSRSYPLISSIQAGTWTEVFDYRDSNGYEYIDTEIDAGE 121 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + SM P + +GD+++++ Q GD + G+ K Sbjct: 122 ---------DAFFLRISGLSMEPKFSEGDLVLIDVRKQPRPGDFVAAVNGNGEATLKRYR 172 Query: 187 SR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +L+ LN +P + DI I Sbjct: 173 ELGDLSPSGNPHFELVPLNPDFPTLSSMKQDIRIIG 208 >gi|226940427|ref|YP_002795501.1| prophage repressor protein [Laribacter hongkongensis HLHK9] gi|226715354|gb|ACO74492.1| Putative prophage repressor protein [Laribacter hongkongensis HLHK9] Length = 233 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 22/211 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + LT LA G + + + PS + I A +N Sbjct: 37 KINEWVRIARANAKLTQQQLADVLGCTKANVSAWENG-----RHEPSYMQMMSISALSNT 91 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + E+P++ + +G+ P G TV H Sbjct: 92 P-----LPYDKNVAPGPFVGGEVPIISWVQAGNFESVVDNFQP-GFAEETVTATVQVRRH 145 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + SM P +++GDILI+ ++ G ++ K + K L+ Sbjct: 146 ---------TYALRVHGDSMEPDFKEGDILIVEPEMEAVHGSYVIAKNGDNEATFKKLV- 195 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + G L LN YP+ +++ S I+ + + Sbjct: 196 QDGGDWYLKPLNPAYPMKSLDGS-IKIVGVV 225 >gi|153800394|ref|ZP_01954980.1| HTH-type transcriptional regulator for conjugative element SXT [Vibrio cholerae MZO-3] gi|124124020|gb|EAY42763.1| HTH-type transcriptional regulator for conjugative element SXT [Vibrio cholerae MZO-3] Length = 215 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 29/227 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S E ++ + +T S LAR+ G+ S ++ R T I + Sbjct: 1 MKTLS-----ERLNHALQLTGVTQSELARRIGIKQQSISQICSGKS---ARSRYTMQIAE 52 Query: 61 ILAATNETICQLLDLPF---SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 L + + + IPL+ + +G G F + Sbjct: 53 ALRVNAHWLATGDGEIGLGVGNVEVGPDIKGRIPLINWVQAGDWTEIAEG-FAHEDAEEW 111 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDRLL 172 V + + SM +G I++++ + + G ++ Sbjct: 112 REVTGKAHEG---------CFALRVKGDSMENPSGKKSIPEGAIIVVDPEMPYSSGSLVV 162 Query: 173 IK-PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + K L+ + L LN YP + + + + Sbjct: 163 ACLDDSIEATFKQLVIDGDQRY-LKPLNPQYPAIPIN-DNCTIVGVV 207 >gi|308173762|ref|YP_003920467.1| LexA [Bacillus amyloliquefaciens DSM 7] gi|307606626|emb|CBI42997.1| LexA [Bacillus amyloliquefaciens DSM 7] gi|328553313|gb|AEB23805.1| LexA repressor [Bacillus amyloliquefaciens TA208] gi|328911900|gb|AEB63496.1| LexA repressor [Bacillus amyloliquefaciens LL3] Length = 206 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 61/227 (26%), Gaps = 36/227 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S ++ I I + PS + GL ++ + R +G R P Sbjct: 1 MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + ++L E+ + + P + N Sbjct: 61 TKPRAIEVLD-------------------EEEVQIPKSQVVNVPVIGKVTAGIPITAVEN 101 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +P+ P + SM+ D +I+ N G+ ++ Sbjct: 102 IDEYFPLPDRMVPPG------EHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVV 155 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + +++ Sbjct: 156 AMTEDDEATVKRFYK-EDNYVRLQPENPTMEPIILQN--VSILGKVI 199 >gi|301155074|emb|CBW14537.1| phage-related repressor protein [Haemophilus parainfluenzae T3T1] Length = 224 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 55/221 (24%), Gaps = 9/221 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + +L+ + A+ G+ + K + + Sbjct: 1 MPDLS-----TRFKTLLYEKHLSMNAFAKMIGVSQPAIAKIANGET-LNPKNILEIAAAL 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119 + + P + + + + PT + Sbjct: 55 NVDPHWLKTGEGDPDPSYRIVEVSEPQNPNTVRIDILDVEASAGNGAYLSPTEQGLLSQE 114 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 A + SM P GD+L ++ + D L + G Sbjct: 115 FDLTFFRQQFGRADAKYLKLITVKGDSMAPTLESGDLLYVDISENYFAADGLYVFTFDGQ 174 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 K L + +S N Y T + D+ R++ Sbjct: 175 TFIKRLQKVGKEMLV-ISDNPTYKEWTFTQDDDVFIHGRVI 214 >gi|312139399|ref|YP_004006735.1| lexa repressor [Rhodococcus equi 103S] gi|325672718|ref|ZP_08152414.1| SOS regulatory protein LexA [Rhodococcus equi ATCC 33707] gi|311888738|emb|CBH48050.1| LexA repressor [Rhodococcus equi 103S] gi|325556595|gb|EGD26261.1| SOS regulatory protein LexA [Rhodococcus equi ATCC 33707] Length = 242 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 58/217 (26%), Gaps = 21/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +K+ E I PS + GL TS + +E + + + + Sbjct: 38 QRKVLEVIRASVAERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDANRPRAVD 97 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + T + P F P + + +P Sbjct: 98 VRGLDGIEDA-------ATERDGSGDRPAPTFVPVLGRIAAGGPILAEEAVEDVFPLPRE 150 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 Q K SM+ GD +++ GD + G+ Sbjct: 151 LVG-------QGSLFLLKVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID-GEATV 202 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G+ + LM N + +D + +++ Sbjct: 203 KTFKR-TGKDVWLMPHNPLFEPI--PGNDAAILGKVV 236 >gi|261885728|ref|ZP_06009767.1| hypothetical protein CfetvA_11654 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 257 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 78/253 (30%), Gaps = 45/253 (17%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + ++H + L +++G+ ++ K +++ P+ + + KI A Sbjct: 4 DILAQNIRFLLKKHKWSEDELVKRSGVGKSTIQLYK----SKKSKNPTVDKLTKIANAFK 59 Query: 67 ETICQ-------------------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + ++ + L + Sbjct: 60 VSSDDLKNKNLSISMSISQKENISQNVHKFPKMSISKSNLSSNEPLNTSNLKKSQDIINI 119 Query: 102 GFFDSGVFPTGNKWN-TVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRK 153 +F+ G+ P + S + + SM P Sbjct: 120 PYFEDTYASAGSGIINYDETPIVMSFDINFLRVFLKITGSLNNLHIINAKGDSMEPTING 179 Query: 154 GDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEM 209 G++L +N V G + GDI K + +S+ L+S N Y +E Sbjct: 180 GELLYINPYDNEQSVISGCIYV-INYDGDIFVKRVDKNPVTKSLTLISDNPKYEPIKIEA 238 Query: 210 SDI---EWIARIL 219 +D+ + I R++ Sbjct: 239 TDLINCKIIGRVV 251 >gi|85372990|ref|YP_457052.1| prophage MuMc02-like, S24 family peptidase [Erythrobacter litoralis HTCC2594] gi|84786073|gb|ABC62255.1| prophage MuMc02-like, peptidase, family S24 [Erythrobacter litoralis HTCC2594] Length = 211 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 15/217 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E +DR+ + + ++R G +P + + G R E + Sbjct: 2 EHVREELDRLILKGGYGYASISRLLGRNPAYVQQFIKR---GSPRKLDDEDRKTLACFFG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + V + G E Sbjct: 59 VD--------EQLLGGPANPVTDGMVEIPVLDVEASAGFGAVAASETAHTRFGFDERWLR 110 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185 H A + + SM P GD ++++++ D + + +V K + Sbjct: 111 HLTS-AKSASLSIVGVKGDSMEPTLSDGDEVLVDASDHGSRLRDGIYVLRSDDALVVKRI 169 Query: 186 ISRRGRS-IDLMSLNCCYPVD-TVEMSDIEWIARILW 220 + G I + S N YP ++ S++ + R++W Sbjct: 170 AIKPGGRQITIASDNPAYPTWHDMDRSEVHVVGRVIW 206 >gi|58337556|ref|YP_194141.1| LexA repressor [Lactobacillus acidophilus NCFM] gi|71648701|sp|Q5FJL4|LEXA_LACAC RecName: Full=LexA repressor gi|58254873|gb|AAV43110.1| transcriptional repressor protein [Lactobacillus acidophilus NCFM] Length = 208 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 29/221 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +I I E P+ + GL TS +E + + Sbjct: 6 SDTKQLEILRYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLSRLERKGFLIKDATKP 65 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L T E +L K KEIP++ +G + Sbjct: 66 RALEITAEGKTELGI-----------KPKEIPVVGVVTAGQPI------LAVEDISEYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + K SM+ GD +I+ N G+ ++ Sbjct: 109 LPPDLE------SDAGELFMLKVHGNSMIKAGILNGDNVIVRKQSTANNGEIVVAMTDEN 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N ++ + + +++ Sbjct: 163 EATVKRFFK-EDDHYRLQPENDTMAPIILQ--QVSILGKVV 200 >gi|16800408|ref|NP_470676.1| LexA repressor [Listeria innocua Clip11262] gi|25453099|sp|Q92C51|LEXA_LISIN RecName: Full=LexA repressor gi|16413813|emb|CAC96571.1| lin1340 [Listeria innocua Clip11262] gi|313619169|gb|EFR90948.1| repressor LexA [Listeria innocua FSL S4-378] gi|313623945|gb|EFR94049.1| repressor LexA [Listeria innocua FSL J1-023] Length = 204 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 + I+E I + PS + GL +S +EG+ R P+ + Sbjct: 7 QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E E P + P + N + Sbjct: 67 IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIEEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + A +T + SM+ GD +I+ G+ ++ + Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPIILNN--VTILGKVI 197 >gi|148265766|ref|YP_001232472.1| putative prophage repressor [Geobacter uraniireducens Rf4] gi|146399266|gb|ABQ27899.1| putative prophage repressor [Geobacter uraniireducens Rf4] Length = 216 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 20/214 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + ++T A G+ + +R + PS + + Sbjct: 12 IGLRIKELRQAKDMTQKEFADSLGIVQGFLSGIERG-----KKSPSDTLLIALCHLYKIN 66 Query: 69 ICQLLDLPFSDGRTTEKKEK---EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L T+ +K E P + + V +P Sbjct: 67 KEWLYTGRGDMFGKTQLPDKLIEEFVTTRIPLLKRIPQGFPDSLKEEDICDYVSLPNG-- 124 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 T M P R GD++I NS +++ + +L+ R + + + Sbjct: 125 --------PQGCYAIITYGDFMAPTIRDGDLVIFNSGGELSNKNIVLVNNRWNEAILRRY 176 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I N Y + ++ + I ++ Sbjct: 177 -RVAGNEIFFSPDNPAYAPFK-QDNNTKIIGTVV 208 >gi|303327832|ref|ZP_07358272.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp. 3_1_syn3] gi|302862193|gb|EFL85127.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp. 3_1_syn3] Length = 227 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 62/221 (28%), Gaps = 25/221 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + L LA + G+ T+ + + + P E ++ A ++ Sbjct: 17 ERLRQRRVQLALRKQDLAAQVGVSLTTIQQYENGQL------PKGEFAVRLSEALRCSLD 70 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRSPHN 128 LL + + G + + Sbjct: 71 WLLAGKGDADGDVLDTPEARLV--------MVPMVEARLSAGTGSFETGGEILRHYAFRW 122 Query: 129 GIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + SM P D+++++ + R+ G + K++ Sbjct: 123 DFLHRKGNPAQMVLLRVSGDSMQPRILHNDVVLIDQSQSDPVPGRIYAVGVEGMVYLKIV 182 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARILWA 221 + + L S+N Y + + + I R +W Sbjct: 183 NAMP-GKLILTSVNPDYAPIEADTCEQLADLVRIIGRAVWV 222 >gi|116872733|ref|YP_849514.1| LexA repressor [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460980|sp|A0AIA3|LEXA_LISW6 RecName: Full=LexA repressor gi|116741611|emb|CAK20735.1| LexA transcription repressor protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 204 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 + I+E I + PS + GL +S +EG+ R P+ + Sbjct: 7 QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E E P + P + N + Sbjct: 67 IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIEEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + A +T + SM+ GD +I+ G+ ++ + Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQNSAINGEIVVAMTDENE 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPIILNN--VTILGKVI 197 >gi|66395748|ref|YP_240112.1| ORF019 [Staphylococcus phage 37] gi|62636171|gb|AAX91282.1| ORF019 [Staphylococcus phage 37] Length = 208 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 24/225 (10%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +K++ I R + +N+ L+ + T+ + + R E + Sbjct: 1 MLGNKEVMAKNISRFMKENNVDRKKLSDDLKVKYTTLSDWIN--AKTYPRIDKIELLADY 58 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T + + + D + P + ++ N + + Sbjct: 59 FNVTKADLVEDKEKQVLDTLP----------VKKIPVLAKISAGLPIYTEENLIDYIYF- 107 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 A ++ K SM L+ GDI+I+ V G ++ + Sbjct: 108 -----AKKDLAPGKEEFGLKVSGDSMDKLFDDGDIVIVEKDSAVENGQLGVVMINGYNAT 162 Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDTV-EMSDIEWIARILWASQ 223 K + G I L+ N + E ++ I RI+ ASQ Sbjct: 163 VKRV-RYNGDQIILIPESNNTNHYPQVYGENDEVIIIGRII-ASQ 205 >gi|258511546|ref|YP_003184980.1| transcriptional repressor, LexA family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478272|gb|ACV58591.1| transcriptional repressor, LexA family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 202 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 61/226 (26%), Gaps = 38/226 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M+ + ++ I E I + PS + GL ++ + +R +G R Sbjct: 1 MSGLTARQRAILEFIRKNIREKGYPPSVREIGEAVGLASSSTVHGHLERLQQKGYLR--- 57 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + E+ + P G G Sbjct: 58 -------------------------RDPTKPRALELLVDDEEPGDVVLAPIVGRVTAGLP 92 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + + E P A + + SM+ GD+ I+ + GD ++ Sbjct: 93 ISALEDIEGYLPLPRDVAKGDEVFALRVVGESMINAGILDGDLAIVRRQTSADNGDIVVA 152 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + + +++ Sbjct: 153 MTDEDEATIKRFYR-EDGRVRLQPENDAMSPLYFPN--VTILGKVI 195 >gi|261886490|ref|ZP_06010529.1| hypothetical protein CfetvA_16566 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 248 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 76/246 (30%), Gaps = 39/246 (15%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + T LA+ +G+ S + +G +T + KI A N Sbjct: 2 NLAQKIKLLRSEKDWTQYDLAQNSGVSLQSIKMYEAGKNKG----ITTTILKKIAHALNV 57 Query: 68 T-------------------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + S + K L + + +F+ Sbjct: 58 NVEFFLDSEFGSPISSPISSPISSPIVRQSPNLSPSKPLNAPNLKMSQDTINIPYFEDTY 117 Query: 109 FPTGNKWN-TVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILN 160 G+ P + S + + SM P G++L +N Sbjct: 118 ASAGSGIINYDETPIVMSFDINFLRVFLKITGSLNNLHIINAKGDSMEPTINGGELLYIN 177 Query: 161 S---AIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI---E 213 V G + GDI K + +S+ L+S N Y +E++D+ + Sbjct: 178 PYENEQSVISGCIYV-INYDGDIFVKRVDKNPVTKSLTLISDNPKYEPIKIEVADLTNCK 236 Query: 214 WIARIL 219 I R++ Sbjct: 237 IIGRVV 242 >gi|194099447|ref|YP_002002559.1| Putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|239999684|ref|ZP_04719608.1| Putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae 35/02] gi|240127870|ref|ZP_04740531.1| Putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae SK-93-1035] gi|268686265|ref|ZP_06153127.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|193934737|gb|ACF30561.1| Putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|268626549|gb|EEZ58949.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|317164955|gb|ADV08496.1| Putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 234 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 4/171 (2%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 PS + I + + + + + Y S G + P Sbjct: 64 PSEPTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 123 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 N + +P +S SM + + +++ ++ Sbjct: 124 NGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 + G K LI + G S+ + S N YP +T + + I R+ W S Sbjct: 181 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWS 231 >gi|296283572|ref|ZP_06861570.1| prophage MuMc02-like, S24 family peptidase [Citromicrobium bathyomarinum JL354] Length = 211 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 15/217 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E +DR+ + + ++R G +P + + G R E + Sbjct: 2 EHVREELDRLILKGGYGYASISRLLGRNPAYVQQFIKR---GSPRKLDDEDRKTLACFFG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + V + G E Sbjct: 59 VD--------EQVLGGPANPVTDGMIEIPVLDVEASAGFGAVAASETAHTRFGFDERWLR 110 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185 H A + + SM P GD ++++S+ D + + +V K + Sbjct: 111 HLTS-AKSASLSIVGVKGDSMEPTLSDGDEVLVDSSDHGSRLRDGIYVLRSDDTLVVKRI 169 Query: 186 ISRRGRS-IDLMSLNCCYPVD-TVEMSDIEWIARILW 220 + G I + S N YP ++ +++ + R++W Sbjct: 170 AIKPGGRQITIASDNPAYPTWHDMDRAEVHVVGRVIW 206 >gi|296273246|ref|YP_003655877.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299] gi|296097420|gb|ADG93370.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299] Length = 218 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 14/221 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 +I E + + + +A L +F K + +I Sbjct: 1 MLLVNEIIERLKDVLSTDGIKGKIFDKDVADALSLSQANFATMKNRSKIPFSNILDFCAI 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 KI +I LL + I +GG + + Sbjct: 61 KKI------SINWLLYNQNPGSLVDSTDKYWIKYFPEISVSAGGGAYDSD----ENYENI 110 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 VP G SM P +I+ ++ +I+ D + Sbjct: 111 EVPPYFVDTLGGEQNLKNIEAINVIGDSMEPTLNSNNIIFVDKSIKSGFRDGIYAFTTNH 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + R +D++S N YP ++ ++E + +++ Sbjct: 171 GLFVKRIQKRVDGKLDIISDNKDYPAQIMKSDELEILGKVV 211 >gi|237747825|ref|ZP_04578305.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379187|gb|EEO29278.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 221 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 73/220 (33%), Gaps = 8/220 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ + T L ++G+ + + + + R I + + + Sbjct: 3 LGKQIKKYRQQLDWTLEKLEEESGVPKGTISALEVRDSD---RSKYAPEIARAFGISVDQ 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + EK + + + GG + + + H Sbjct: 60 LMDENIDASEAVNSHEKSKGDDEHTIRQFNTGGGMGNGLILQEQSGIIENFRVSSAWLHA 119 Query: 129 GI--YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 I ++ SM PL+ GD +I++ I+ G+ + K L Sbjct: 120 NIKGHSSTKNLCIVTGYGESMKPLFNPGDPVIVDLQIKEYVGEFPYFFRIENEGFIKRLQ 179 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI--LWASQ 223 G ++S N Y T++ D E ++ +W S+ Sbjct: 180 RVPGEGYRVLSDNPKYETWTIKQGMDFEIFGKVIKVWKSE 219 >gi|150396569|ref|YP_001327036.1| LexA repressor [Sinorhizobium medicae WSM419] gi|166224651|sp|A6U971|LEXA_SINMW RecName: Full=LexA repressor gi|150028084|gb|ABR60201.1| SOS-response transcriptional repressor, LexA [Sinorhizobium medicae WSM419] Length = 238 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + K+ + + S G Sbjct: 61 ARALEVIKLPEAYAGNPQVRRGFSPSVIEGSLGKPAAPAPAPKPAPPAENASVVVPVMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G + + + + + SM GD +I+ +A + Sbjct: 121 IAAGVPISAIQNNMHDISVPIEMIGSGEHYALEIKGDSMIEAGILDGDTVIIRNASTASI 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ +++ Sbjct: 181 GDIVVALIDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGKLV 231 >gi|300811613|ref|ZP_07092093.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497408|gb|EFK32450.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325685247|gb|EGD27365.1| SOS regulatory protein LexA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 206 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 65/215 (30%), Gaps = 19/215 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KI I + ++ LT LA GL T+ ++ P + I I A + Sbjct: 2 KIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSN-----PPAKRIPAIADALD 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ +LL K L+ + G G + E Sbjct: 57 ISVSELL---------GNDDAKPKNLVDLADAKVISIPILGTIACGKPIFSEENYEGHLN 107 Query: 127 HNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + Q SM P GD +I+ V G+ + + K + Sbjct: 108 KVYFGDPPTGELFALTCQGDSMAPYILDGDKVIVRKQETVENGEIAAVLIN-NEATLKTV 166 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 +++ L+ N Y + + + +++ Sbjct: 167 KYVGDKTL-LIPKNDAYDPLVLTPDNQNQVLGKVV 200 >gi|268595497|ref|ZP_06129664.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268597551|ref|ZP_06131718.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|293399346|ref|ZP_06643511.1| phage repressor protein, phage associated protein [Neisseria gonorrhoeae F62] gi|268548886|gb|EEZ44304.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268551339|gb|EEZ46358.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|291610760|gb|EFF39870.1| phage repressor protein, phage associated protein [Neisseria gonorrhoeae F62] Length = 229 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 4/171 (2%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 PS + I + + + + + Y S G + P Sbjct: 59 PSEPTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 118 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 N + +P +S SM + + +++ ++ Sbjct: 119 NGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 175 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 + G K LI + G S+ + S N YP +T + + I R+ W S Sbjct: 176 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWS 226 >gi|169349664|ref|ZP_02866602.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] gi|169293739|gb|EDS75872.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] Length = 206 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 22/213 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I ++ + LT L G+ ++ K + R E+I K+ Sbjct: 3 GQRIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENN----RVENLKKETIQKLSEIFEVPA 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + ++ T P + +G+F N + +PE Sbjct: 59 TYFLGIDETNQPTITNS-------ITIPLYNDISCGTGIFVDDNIDEYIALPESL----- 106 Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM+ GD+++ + GD K Sbjct: 107 -LTLNKEYFCQYASGDSMIDENINPGDLIVFEKCNHLKNGDIGCFTLEDNIATCKKFYQD 165 Query: 189 RGR-SIDLMSLNCCYPVDTVEMSD---IEWIAR 217 I L N Y + + I + Sbjct: 166 DDNQCIILQPANSSYSPLIINYENQNGFRIIGK 198 >gi|167565035|ref|ZP_02357951.1| putative transcriptional regulator [Burkholderia oklahomensis EO147] Length = 230 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 24/208 (11%) Query: 29 RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88 R AG+ KR I P E + I AT +I LL + ++ Sbjct: 28 RAAGISDGLLQTIKRGSI------PKAEGLLAISEATGRSIDWLLGRVELANGSLVTADQ 81 Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKW---------NTVGVPEIRSPHNGIYAIQTQDTR 139 G + T+ H ++A + Sbjct: 82 AEANAASSE-FVYVPRYDVKASAGTGFWLGDEAKAKFTMAFRRHWVEH-YLHANPKDLSV 139 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 + SM P+ +GD +++N A + D + + G ++ K L ++ ++S N Sbjct: 140 LRVHGDSMYPVLHEGDNILINHAQT-SPQDGIYVLRLDGQMLVKRLQWVGAATVRVISAN 198 Query: 200 CCYPVDTV------EMSDIEWIARILWA 221 YP V + + + R++W Sbjct: 199 PDYPPYEVALSSPEDQREFCIVGRVVWY 226 >gi|170720494|ref|YP_001748182.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169758497|gb|ACA71813.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 229 Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 15/219 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-- 68 + I + LT + LA G++ S + +R + R +I + + Sbjct: 5 DRIKAARKHARLTQAELAAMTGINQASISDLERGRSQ---RSSYNSTIARACGVSAIWLE 61 Query: 69 -ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125 + P+ + + G+ +V Sbjct: 62 AGIGTMLQNDDVPGFDAPGFDSNVAPALAPTRYFSYPEISWVQAGSPSEAMSVANIAACP 121 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKP-RTGDI 180 H+ K +SM + +G ++++ I+ G ++ + + + Sbjct: 122 SHHSDVWAGENGFWLKVIGSSMTSQSGISFPEGVLILVAPDIEPRPGQYVVARMIDSNEA 181 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ G L LN +P ++ E + ++ Sbjct: 182 TFKQLVRDAGD-FYLTPLNPAFPAKKMD-DTWEIVGTVV 218 >gi|290968677|ref|ZP_06560215.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] gi|290781330|gb|EFD93920.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] Length = 226 Score = 94.8 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 78/225 (34%), Gaps = 22/225 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K + + I + +++N+T +A K G+ ++ + + G S E + KI Sbjct: 7 NKMVGKRIKKQRKQNNMTLKDIAVKLGVTESTVQRYE----TGNISNVSIEMLQKIGKIL 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + LL ++ ++ + + L S F +++ + I Sbjct: 63 LVSPAFLLGWDSAEKVVSDLEAHKHKFLDASISAGYPFTVD-------GVSSLPLVSIPD 115 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPR--TGDI 180 G YA K SM + G + + + I V+ GD ++ Sbjct: 116 VFLGKYATNKNIVVMKVNGDSMNKIIPNGSFIAVKTNIDVLSVSNGDIVVANVDGAENGY 175 Query: 181 VAKVLISRR-GRSIDLM--SLNCCYPVDTVEMSD---IEWIARIL 219 K + + L S N Y + ++D + + +++ Sbjct: 176 TIKHIYKDAINNRVILRPNSTNLAYTDIVITLTDTQRLYIVGKVV 220 >gi|229845279|ref|ZP_04465411.1| putative phage repressor [Haemophilus influenzae 6P18H1] gi|229811732|gb|EEP47429.1| putative phage repressor [Haemophilus influenzae 6P18H1] Length = 229 Score = 94.8 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 62/224 (27%), Gaps = 21/224 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + L+ + ++K G+ + +K R + ++I +I A Sbjct: 4 LATRLQDTLYEQRLSVNAFSKKVGISQQAISKIIRGET------LNPKNIVEIATALGVD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRSP- 126 + L + + P I S Sbjct: 58 VNWLKTGEGD--SEIGRITAYCHSEKDNEHTLRVDLLDVNLAAYSSGIINAEYPNIVSSL 115 Query: 127 ---HNGIYAIQTQD-----TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 G I + + SM+P ++ DI+ +++ I+ G+ + G Sbjct: 116 YFTEEGANRILGRTTTNGVYMFRVPTDSMVPTIKQTDIVFIDTNIKHYIGEGIYAFSLNG 175 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219 + K L I +S N Y + I + + Sbjct: 176 EEYIKRLQRLPTGVIRALSDNKHYEPFDITEELFDSAVIIGKFI 219 >gi|193066523|ref|ZP_03047566.1| CI protein [Escherichia coli E22] gi|192925845|gb|EDV80496.1| CI protein [Escherichia coli E22] Length = 217 Score = 94.8 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS I + Sbjct: 8 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 62 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 +P P + + S Sbjct: 63 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 117 Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P + G +++++ V GD + + + K LI Sbjct: 118 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVELGDFCIARLGGDEFTFKKLIR 177 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 178 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 210 >gi|13470826|ref|NP_102395.1| LexA repressor [Mesorhizobium loti MAFF303099] gi|25453103|sp|Q98MD2|LEXA_RHILO RecName: Full=LexA repressor gi|14021569|dbj|BAB48181.1| SOS response regulator; LexA [Mesorhizobium loti MAFF303099] Length = 245 Score = 94.8 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 62/242 (25%), Gaps = 26/242 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--------- 51 M + ++ I + + PS K LD S + R R Sbjct: 1 MLTRKQHELLMFIHERLKESGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 52 -------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 P + K + + L + + Sbjct: 61 ARALEVLRLPDSIAPGLNAAKKFSPSVIQGSLGQGGLGRQIKPAPSRLPAAGNDDDAVSA 120 Query: 99 GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 S G G + + + + + + SM+ GD + Sbjct: 121 VSIPVM--GRIAAGVPIDAIQHQTHSISVPPDMIMGGEHYALEVKGDSMIDAGIFDGDTV 178 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 I+ +A + G+ ++ + K + SI L + N Y ++ + Sbjct: 179 IIRNADTASPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGK 237 Query: 218 IL 219 ++ Sbjct: 238 LV 239 >gi|68250056|ref|YP_249168.1| transcriptional regulator [Haemophilus influenzae 86-028NP] gi|145629482|ref|ZP_01785280.1| predicted transcriptional regulator [Haemophilus influenzae 22.1-21] gi|145638978|ref|ZP_01794586.1| predicted transcriptional regulator [Haemophilus influenzae PittII] gi|68058255|gb|AAX88508.1| predicted transcriptional regulator [Haemophilus influenzae 86-028NP] gi|144978325|gb|EDJ88089.1| predicted transcriptional regulator [Haemophilus influenzae 22.1-21] gi|145271950|gb|EDK11859.1| predicted transcriptional regulator [Haemophilus influenzae PittII] gi|309750942|gb|ADO80926.1| Conserved hypothetical protein [Haemophilus influenzae R2866] Length = 232 Score = 94.8 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 16/229 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + ++ + + L + G+ + R E+I K T Sbjct: 3 DLASRLNELMAKQGKNIVDLQKAVGVTYEMARRYTLGTAT--PRDNKIEAIAKYFGVTPA 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNK------- 114 + + T+ K+ L+ + F+ GN Sbjct: 61 HLKYGTVDSLENQVTSNVKDVGSFDLWDRNTPLNSDEYAVPFYQDIRLAAGNGFADDIAD 120 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 +N + +S SM P+ G + ++ + ++ Sbjct: 121 YNNFKLRFSKSTLRKQGVQYENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAI 180 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222 G + K+L + + + S N +P + E+ DI + ++ W S Sbjct: 181 NHGGLLRIKLLYNMPNEQVKIRSYNTEEHPDEIAELQDISVLGKVFWYS 229 >gi|78221357|ref|YP_383104.1| putative prophage repressor [Geobacter metallireducens GS-15] gi|78192612|gb|ABB30379.1| putative prophage repressor [Geobacter metallireducens GS-15] Length = 216 Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 58/216 (26%), Gaps = 22/216 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + LT A G+ + +R + PS + + + Sbjct: 13 GRRIKEIRINKGLTQKEFADSLGIVQGFLSGIER-----EKKTPSDTLLIALCNLYEISP 67 Query: 70 CQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 L RT + P G + + V +PE Sbjct: 68 SWLASGEGEMYRTPRRAGQPATSPGGEGIPLLERIGPEFPHRVGEDDIRDRVALPE---- 123 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + M P R GD++I + G+ +L+ R G+ + + Sbjct: 124 ------VSEGCYAIVAYGDFMAPTIRDGDLVIFRPGEEPQNGEVVLVTNRWGEAILRRY- 176 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220 R I N Y T + I + +W Sbjct: 177 RVRNGDIVYSPDNATYSPFT-PAPETRIIGTVAEVW 211 >gi|55820932|ref|YP_139374.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55822854|ref|YP_141295.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] gi|55736917|gb|AAV60559.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55738839|gb|AAV62480.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 16/222 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68 + + + E ++ + +A+ G+ +S+ + + + S +F + + Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 69 ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +++++ + +E+E P + G + Sbjct: 64 EHEIVEVYLELNEENRQEALRFTKALLEEQEAEKKKSPVIPLYSYKVFERLSAGTGYTY- 122 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + D SM P Y G+++++ GD + G Sbjct: 123 -FGDGNYDEVFYDEEIDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDGD-VYAVDWDG 180 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I +I+ Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221 >gi|104783161|ref|YP_609659.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95112148|emb|CAK16875.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 248 Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 34/249 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + +RH L+P+ L R+ G+ ++ ++ + PS + + + Sbjct: 1 MHAMQKRNVASVLRALLDRHGLSPTELHRRTGVPQSTLSRILSE----KIVDPSDKHVSR 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL------------LYFPPSGSGGFFDSGV 108 I + QL + S F Sbjct: 57 IAEYFGVSTDQLRGRAELGEPREAAALTPVHAALSDISLWDDETPVEDDEVSVPFLREVE 116 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSA 162 G+ + E G +++ + SMLP+ R G + +N+ Sbjct: 117 LAAGSGRFVIEESENARLRFGKRSLRHNGVQFDHAKCVTVRGNSMLPVLRDGATVGVNTG 176 Query: 163 I----QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV-----EMSDI 212 + GD L G + K + I L S N +P + + I Sbjct: 177 KCTIGDIIDGD-LYAINHNGQLRVKQVYRLPTG-IRLRSFNRDEHPDEDYSFQQMQEEQI 234 Query: 213 EWIARILWA 221 + + W Sbjct: 235 SLLGHVFWW 243 >gi|110804331|ref|YP_687851.1| putative prophage repressor CI [Shigella flexneri 5 str. 8401] gi|291281104|ref|YP_003497922.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|300898212|ref|ZP_07116568.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|110613879|gb|ABF02546.1| putative prophage repressor CI [Shigella flexneri 5 str. 8401] gi|284920569|emb|CBG33631.1| putative prophage repressor [Escherichia coli 042] gi|290760977|gb|ADD54938.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|300358089|gb|EFJ73959.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|320654501|gb|EFX22535.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659998|gb|EFX27537.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. USDA 5905] gi|324019900|gb|EGB89119.1| peptidase S24-like domain protein [Escherichia coli MS 117-3] Length = 210 Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 24/218 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + L + LA+K G S + + + R R+ + ++ +A + Sbjct: 3 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRF-----LPELASALGVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSP 126 + LL+ + G + P + Sbjct: 57 VDWLLNGTSDSNVRFVGHVEPKGKYPLISMVRAGSWCEACEPYDIKDIDEWYDSDVNLL- 115 Query: 127 HNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181 K + SM +G ++++++ + G ++ + Sbjct: 116 --------GDGFWLKVEGDSMTSPVGQSIPEGHMVLVDTGREPVNGSLVVAKLTDANEAT 167 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ G+ L LN +P+ + + + I ++ Sbjct: 168 FKKLVIDGGQKY-LKGLNPSWPMTPINGN-CKIIGVVV 203 >gi|227904197|ref|ZP_04022002.1| LexA repressor [Lactobacillus acidophilus ATCC 4796] gi|227868216|gb|EEJ75637.1| LexA repressor [Lactobacillus acidophilus ATCC 4796] Length = 208 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 29/221 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +I I E P+ + GL TS +E + + Sbjct: 6 SDTKQLEILRYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLSRLERKGFLIKDATKP 65 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L T E +L K KEIP++ +G + Sbjct: 66 RALEITAEGKTELGI-----------KPKEIPVVGVVTAGKPI------LAVEDISEYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + K SM+ GD +I+ N G+ ++ Sbjct: 109 LPPDLE------SDAGELFMLKVHGNSMIKAGILNGDNVIVRKQSTANNGEIVVAMTDEN 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N ++ + + +++ Sbjct: 163 EATVKRFFK-EDDHYRLQPENDTMAPIILQ--QVSILGKVV 200 >gi|304560689|gb|ADM43352.1| P22 repressor protein c2 [Edwardsiella tarda FL6-60] Length = 216 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 73/221 (33%), Gaps = 18/221 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I + + L+ L++ G+ + ++ +R P +++ + Sbjct: 1 MKSETMGYRIHKRRKELKLSQVSLSKAVGVSNVAISQWERDET-----SPRGDALLNLAE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 A + L++ D +KE+ P++ + +G +P G Sbjct: 56 ALQCSAEYLVNGGDVDHNIEFRKERTQKGMYPVISWVSAGQWSEAIEA-YPIMAVDRWYG 114 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTG 178 E + ++ +G ++++ + G ++ Sbjct: 115 TTEECHASSFWLDVKGDSMTSPVG-----LSIPEGMAILVDPEAAPDNGKLVVAKLVNDN 169 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L+ GR L LN YP+ + + + I ++ Sbjct: 170 EATFKKLVIDSGRRF-LKPLNPQYPMIEINGN-CQIIGVVV 208 >gi|114327480|ref|YP_744637.1| LexA repressor [Granulibacter bethesdensis CGDNIH1] gi|122327547|sp|Q0BTY8|LEXA_GRABC RecName: Full=LexA repressor gi|114315654|gb|ABI61714.1| lexA repressor [Granulibacter bethesdensis CGDNIH1] Length = 242 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 19/237 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ ID + +PS KA L+ S + R R + Sbjct: 1 MLTRKQYELLLLIDGHLRKTGFSPSFEEMKAALNLKSKSGIHRLISALEERGFLRRRHHR 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIP-----------------LLYFPPSGSGGF 103 A + + +P + P + + + Sbjct: 61 ARALEVIRMPEAASMPVPKTAPSAPSFASPPAFTPNVIQGSFSSRIAGVRAAQDASAVQL 120 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA 162 G G + + + SM+ GD +I+ + Sbjct: 121 PLYGRIAAGMPIEALRDTSAYLSVPIDMLGNGEHYALEVAGDSMIDAGIFDGDTVIIQQS 180 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ ++ K L R G+S+ L N + + R++ Sbjct: 181 DLAENGQIVVALIDDTEVTLKRLRRR-GKSVALEPANERHETRIFPADRVRVQGRLI 236 >gi|307251335|ref|ZP_07533252.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856641|gb|EFM88780.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 225 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 12/208 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + NL +A S R P+ + + K+L Sbjct: 7 EFVREKMVEKNLKQDDIAEALDRTQGSIGHWLTG-----RRTPNFDDVAKMLNVVGVDQV 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L ++ L G T + TV + E+R+ + + Sbjct: 62 ILNSDGLITTLDNDE-------LEIIGKPKDGIIPVVGEATMGRDETVRLEELRTGYINL 114 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 Y+ + + +SM P + G+ +++ GD +LI G + K L R Sbjct: 115 YSADPDAYAVRGKGSSMEPRIKSGEYIVIEPNTPPMNGDDVLICTIAGQYMIKTLDWHRD 174 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 S+N + + +++ I + Sbjct: 175 GEYRFSSINNSHQPFNLPENEVVNIHTV 202 >gi|319892358|ref|YP_004149233.1| SOS-response repressor and protease LexA [Staphylococcus pseudintermedius HKU10-03] gi|317162054|gb|ADV05597.1| SOS-response repressor and protease LexA [Staphylococcus pseudintermedius HKU10-03] gi|323464540|gb|ADX76693.1| SOS regulatory protein LexA [Staphylococcus pseudintermedius ED99] Length = 207 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 60/227 (26%), Gaps = 34/227 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53 M + +I+E I + + PS + GL ++ + E R P Sbjct: 1 MRELTKRQNEIFEFIKHVVQSKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +I+ + + + P + + N Sbjct: 61 TKPRAIEIVNEL------------------MGEPVNMEETIYVPVIGKVTAGTPISAIEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +PE + + Q SM GD +I+ S GD ++ Sbjct: 103 VEEYYPLPEHFTSTHN-----GQIFILNVMGDSMIEAGILDGDKVIVRSQSIAENGDIIV 157 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + + + +++ Sbjct: 158 AMTEEDEATVKRFYKEKN-RYRLQPENSSLEPIYL--EQVTVLGKVI 201 >gi|312278268|gb|ADQ62925.1| Putative transcriptional regulator [Streptococcus thermophilus ND03] Length = 229 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 16/222 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68 + + + E ++ + +A+ G+ +S+ + + + S +F + + Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 69 IC----------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +E+E P + G + Sbjct: 64 EHEIVEVYLELTEENRQEALRFTKALLEEQEAEKKKAPVIPLYTYKVFERLSAGTGYTY- 122 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + D SM P Y G+++++ GD + G Sbjct: 123 -FGDGNYDEVFYDEEIDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDGD-VYAVDWDG 180 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I +I+ Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221 >gi|251795604|ref|YP_003010335.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543230|gb|ACT00249.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 215 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 21/211 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + + N + LA K GL + + ++ TE + + AA + T+ Sbjct: 15 GANIKKYRDLRNYSLQVLAEKVGLTKKTIQRYEQGE-----HRIDTERLKALAAALDVTV 69 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 QL + + + + + L G GN E Sbjct: 70 LQLTEGAYEKLGIEVDESENVTLPVV-----------GKISCGNGQIAYEYIEGYESTPR 118 Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + + SM GD+L++ +V G+ + + V K + + Sbjct: 119 SWINGGEYFYLRAKGDSMQGARIFDGDLLLIRKQEEVEDGEIAAVLI-GEEAVLKRVYRQ 177 Query: 189 RGRSIDLMSLNCCYPVDTVEMSD--IEWIAR 217 G ++ L S N YP + I I + Sbjct: 178 -GTTLVLQSENANYPPIICTAGENNIYVIGK 207 >gi|229018886|ref|ZP_04175731.1| LexA repressor [Bacillus cereus AH1273] gi|228742419|gb|EEL92574.1| LexA repressor [Bacillus cereus AH1273] Length = 223 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 62/226 (27%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 18 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + + K +P+ + Sbjct: 78 TK--PRAIEILGDNRMETETQSVIQVPIVGKVTAGLPI----------------TAVESV 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + +P A Q + SM+ GD++++ G+ ++ Sbjct: 120 EDHFPLPASIV------AGADQVFMLRISGDSMIDAGIFDGDLVVVRQQQSAYNGEIVVA 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216 >gi|33151354|ref|NP_872707.1| transcription regulator [Haemophilus ducreyi 35000HP] gi|33147574|gb|AAP95096.1| probable transcription regulator [Haemophilus ducreyi 35000HP] Length = 233 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 17/222 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I E+ + + LA GL ++ + R P I I + Sbjct: 11 IGNRIRDEREKAGRSRNELADTLGLSLSTLQLWE-----TNEREPQASMIITIAEELGVS 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--NTVGVPEIRSP 126 LL +G K P F++ G V P+ + P Sbjct: 66 PSYLLTGETEEGEVKTPVAKTQPTQQIQDISMINSFETISVSAGFGSFNEGVTEPDGQVP 125 Query: 127 HNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++ SM P GD L+++ + D + + + Sbjct: 126 YDDELLRKLGVKPRHCAVFWASGNSMQPTIDNGDQLLVDLDRKDIKSDSVYLVQNGTSVW 185 Query: 182 AKVLISRRGRSIDLMSLNC-CYPVDTV---EMSDIEWIARIL 219 K + R S++L+S N Y + + +++ I +++ Sbjct: 186 VKRV-KVRWNSVELISDNKEEYDPIILTTTDAENLQVIGQVV 226 >gi|52842770|ref|YP_096569.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629881|gb|AAU28622.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 225 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 10/222 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +KI + I + LT LA + P+ N + R P E I ++ Sbjct: 1 MSIREKIGKRIHEARKAKGLTRQALADLTDDIKPSRINNWEHGT-----RMPGPEEITQL 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 A + L+ L + L+ G + + + Sbjct: 56 AQALEVSPSFLMGLSDERDGDFGINSRVGSLIPLLDHKQAGDPKYHIQRVKEEPYAEKIT 115 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDI 180 + + + K D SM P R DI I++ +I N GD ++ D+ Sbjct: 116 FLPVNQDIANQLDEYAFALKMLDDSMSPELRINDIQIVDPSISPNPGDFVVVKISGKDDV 175 Query: 181 VAKVLISR--RGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + +L++LN +P T E +E + ++ Sbjct: 176 IICQYKKISYTSSEFELLTLNDNWPNITFNESEQVEIVGTVI 217 >gi|313122873|ref|YP_004033132.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279436|gb|ADQ60155.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 206 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 65/215 (30%), Gaps = 19/215 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KI I + ++ LT LA GL T+ ++ P + I I A + Sbjct: 2 KIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSN-----PPAKRIPAIADALD 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ +LL K L+ + G G + E Sbjct: 57 ISVSELL---------GNDDAKPKNLVDLADAKVISIPILGTIACGKPIFSEENYEGHLN 107 Query: 127 HNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + Q SM P GD +I+ V G+ + + K + Sbjct: 108 KVYFGDPPTGEVFALTCQGDSMAPYILDGDKVIVRKQETVENGEIAAVLIN-NEATLKTV 166 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 +++ L+ N Y + + + +++ Sbjct: 167 KYVGDKTL-LIPKNDAYDPLVLTPDNQNQVLGKVV 200 >gi|289434584|ref|YP_003464456.1| LexA SOS response regulator, transcription repressor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170828|emb|CBH27370.1| LexA SOS response regulator, transcription repressor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633434|gb|EFS00264.1| repressor LexA [Listeria seeligeri FSL N1-067] gi|313638120|gb|EFS03382.1| repressor LexA [Listeria seeligeri FSL S4-171] Length = 204 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 + I+E I + PS + GL +S +EG+ R P+ + Sbjct: 7 QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E E P + P + N + Sbjct: 67 IL--------------------SLEDEVETPNVVNIPIIGKVTAGMPITAIENIEEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + A +T + SM+ GD +I+ G+ ++ + Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPIILNN--VTILGKVI 197 >gi|260597511|ref|YP_003210082.1| 26 kDa repressor protein [Cronobacter turicensis z3032] gi|260216688|emb|CBA30048.1| 26 kDa repressor protein [Cronobacter turicensis z3032] Length = 233 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 79/236 (33%), Gaps = 24/236 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I + ++ N+ + LA +D + ++ + G+ + + +++ + Sbjct: 1 MRM----NIGNRVRQLRLAKNMKIAELADAVEVDAANISRLE----TGKQKQFTEQTLNR 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW----N 116 + A T+ L + T K K + G + + Sbjct: 53 LAHALGVTVADLFTSTDNAT-TVYKNSKPDSAIGEGTDVFRVEVLDASASAGMGYIQGSD 111 Query: 117 TVGVPEIRS-PHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + V + H A+ + SM P GD++ ++ ++ GD Sbjct: 112 VIDVIQAIEYNHEKALAMFGGRSAGNVKVINVRGDSMSPTIEPGDLVFVDVSVNEFDGDG 171 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 + G I AK L + + ++S N Y +++ S ++L SQ Sbjct: 172 IYTFGFDGKIYAKRLQMIPDQ-LLVISDNPKYREWSIDKSNEHRFYIYGKVL-ISQ 225 >gi|331678336|ref|ZP_08379011.1| repressor protein C2 [Escherichia coli H591] gi|331074796|gb|EGI46116.1| repressor protein C2 [Escherichia coli H591] Length = 210 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 66/218 (30%), Gaps = 24/218 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + L + LA++ G S + + + R R+ + ++ +A + Sbjct: 3 ISSRVKSKRIQLGLNQAELAQRVGTTQQSIEQLENGKTK-RPRF-----LPELASALGVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSP 126 + LL+ + G + P + Sbjct: 57 VDWLLNGTSDSNVRFVGHVEPKGKYPLISMVRAGSWCEACEPYDIKDIDEWYDSDVNLL- 115 Query: 127 HNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181 K + SM +G ++++++ + G ++ + Sbjct: 116 --------GDGFWLKVEGDSMTSPVGQSIPEGHMVLVDTGREPVNGSLVVAKLTDANEAT 167 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ G+ L LN +P+ + + + I ++ Sbjct: 168 FKKLVIDGGQKY-LKGLNPSWPMTPINGN-CKIIGVVV 203 >gi|227111558|ref|ZP_03825214.1| regulator of pectin lyase production [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 37/244 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + L+ L G+ + K + T I ++ + + Sbjct: 5 LAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS------QTTKIVELSNSLHVR 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L + + + + P + V + Sbjct: 59 PEWLANGEGPMRSSEVTRSLQEPSIPPKSEWGTVSAWDSTTELSEDEVEVPFLKDIEFAC 118 Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163 G IQ++D SM P+ G + +++ Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178 Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + +L + G K L + G + + S N + SD+E I R+ Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLVIHSFNRE-TDEEAYESDVEIIGRV 237 Query: 219 LWAS 222 W S Sbjct: 238 FWYS 241 >gi|218781420|ref|YP_002432738.1| phage repressor [Desulfatibacillum alkenivorans AK-01] gi|218762804|gb|ACL05270.1| putative phage repressor [Desulfatibacillum alkenivorans AK-01] Length = 229 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 20/231 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +++ E ID+ + A K + + + P +++ K Sbjct: 1 MANTFPERMQEIIDQQK-----SARDFAIKCSISDSLIRAYLSGKSQ-----PGLDNLAK 50 Query: 61 ILAATNETICQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I + L+ R + G+ + Sbjct: 51 IADVAQVNVQWLVTGEGPMMRGEPLIPSNLDPQGGLDLDEFDYIPMTHAELSAGDGRVVL 110 Query: 119 G------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRL 171 R + + + SMLP + D +I++ G+ Sbjct: 111 EEGFKNRFAFRRDWLRRVGLNKNHAVMMVVRGDSMLPTLQDHDTVIVDLNRTRIDTGNIY 170 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 + + K L +R + + ++S N Y +E DI I +++W S Sbjct: 171 AVNMGDDLLSIKRLEARGPQ-VRVISDNKAYEPYDMENQDIRVIGQVVWFS 220 >gi|254361662|ref|ZP_04977799.1| possible LexA family transcriptional regulator/S24 family protease [Mannheimia haemolytica PHL213] gi|153093184|gb|EDN74195.1| possible LexA family transcriptional regulator/S24 family protease [Mannheimia haemolytica PHL213] Length = 239 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 22/213 (10%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 S AR G+ S ++ + + PS ++ KI +N ++ L S ++ Sbjct: 26 NYSEFARAVGVAQASLSRWVKGEAD-----PSRSNLVKIAEVSNVSLEWLATGKESKPQS 80 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPT-------GNKWNTVGVPEIRSPHNGIYAIQ- 134 F T G+ V P+ + P+ Sbjct: 81 ENTSIVAREFERLEKMADDIVSMINSFRTINVSAGFGSFNEGVTKPDGQEPYADSLLQSL 140 Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRR 189 TSM P D ++++ + + D++ + + K + + Sbjct: 141 GVKAHNCGVFWANGTSMHPTIADSDQMLVDFSKREPRGDDKIYLVQNGESVWVKRI-RKE 199 Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 I+L+S N Y + + ++ I +++ Sbjct: 200 WDYIELISDNESYRPIQITAEEAQNLQIIGQVV 232 >gi|160902695|ref|YP_001568276.1| LexA family transcriptional regulator [Petrotoga mobilis SJ95] gi|189046543|sp|A9BGA3|LEXA_PETMO RecName: Full=LexA repressor gi|160360339|gb|ABX31953.1| transcriptional repressor, LexA family [Petrotoga mobilis SJ95] Length = 205 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 56/222 (25%), Gaps = 26/222 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + ++ + I E++ PS + R + Sbjct: 1 MEELTKRQSQVLDFIKSYMEKNGFAPS------------IRDIMKHFNFKSPR-----AA 43 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K L + + K + P + + + Sbjct: 44 HKHLIILEKKGYIERKNVSRGIKMMPKSGEIFATETLAPVSGKIAAGDAIEAIQTISDYI 103 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 +P P N Y + + SM + GD +++ GD ++ Sbjct: 104 PIPTNFFPKNYEY------FSLRVEGNSMIEAQIKSGDFVLIRKQDYAMDGDIVVALIDG 157 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K + L+ N V+ ++ +++ Sbjct: 158 NDATLKRYKRLNEDEVLLIPENKSMKEIKVKADHLKIQGKMV 199 >gi|240014426|ref|ZP_04721339.1| Putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240081451|ref|ZP_04725994.1| Putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA19] gi|240120855|ref|ZP_04733817.1| Putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID24-1] Length = 180 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 4/171 (2%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 PS + I + + + + + Y S G + P Sbjct: 10 PSEPTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 69 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 N + +P +S SM + + +++ ++ Sbjct: 70 NGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 126 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 + G K LI + G S+ + S N YP +T + + I R+ W S Sbjct: 127 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWS 177 >gi|126650160|ref|ZP_01722393.1| LexA repressor [Bacillus sp. B14905] gi|126593332|gb|EAZ87294.1| LexA repressor [Bacillus sp. B14905] Length = 205 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 58/227 (25%), Gaps = 37/227 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 M S + I I PS + GL ++ + R +G R P Sbjct: 1 MKKVSKRQEDILAFIKDEVRAKGYPPSVREIGEAVGLASSSTVHGHLARLEQKGFIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL ++ + + P S + N Sbjct: 61 TKPRAIEILEP--------------------EESIQKQHVIHVPLVGKVTAGSPITAIEN 100 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +P+ Q + SM GD++I+ GD ++ Sbjct: 101 IEEYFPLPDTYGTSED------QLFMLEIMGESMIEAGILDGDLVIVKQKSTAINGDIVV 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N V + + +++ Sbjct: 155 AMTAEDEATVKRFFKEKN-HFRLQPENSSMEPIIV--DQVSILGQVV 198 >gi|332185800|ref|ZP_08387547.1| lexA repressor [Sphingomonas sp. S17] gi|332014158|gb|EGI56216.1| lexA repressor [Sphingomonas sp. S17] Length = 227 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 49/220 (22%), Gaps = 5/220 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I+ + ++PS K LD S + R R + Sbjct: 1 MLTAKQHELVCFINDRLKETGVSPSFEEMKEALDLKSKSGVHRLISALEERNFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + + P + G G Sbjct: 61 ARALEVLRMPDRPEKPASAPAATAGNVRNPSARTVGEPANDVVEIPLHGRIAAGVPIEAF 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + SM GD ++ G ++ Sbjct: 121 E-GSSMLAVPAALLGSGEHYALEVSGDSMVEAGILDGDYALIRRTDVARDGQIVVALIDE 179 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K R G + L N Y + + + Sbjct: 180 SEATLKYF-RREGSMVRLDPANRAYDPQRYAPAQVRVQGK 218 >gi|215484235|ref|YP_002326462.1| Repressor protein C2 [Acinetobacter baumannii AB307-0294] gi|213987961|gb|ACJ58260.1| Repressor protein C2 [Acinetobacter baumannii AB307-0294] Length = 230 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 13/203 (6%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 LAR G+ P S + G+++ E++ K L S +K Sbjct: 24 DLARAVGVKPPSVSDWL----SGKSKTMEGENLLKASKFLGVNPNWLASGNGSPHEMIKK 79 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEIRSPHNGIYAIQTQDTRHK 141 +E + W+ V P + + + Sbjct: 80 TNEEDLSNILFRDLKLHKIPVLDYVQAGFWHEVAYDGSSPHSYTYTDYVSCSPESIFSVI 139 Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-----SRRGRSIDLM 196 Q SM P +++GD+LI++++I G ++ + + + K +L+ Sbjct: 140 VQGKSMEPDFKEGDMLIVDASINPKPGSYVIAQNGSHEATFKKYRVLAHDEYGRDVFELI 199 Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219 +N +P + DI I ++ Sbjct: 200 PINSDFPTLSSVTHDIRIIGVVV 222 >gi|294101955|ref|YP_003553813.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616935|gb|ADE57089.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 235 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 72/231 (31%), Gaps = 24/231 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + + LT LA K G+ + + ++ R+P + + ++ Sbjct: 4 GKRLSELRVKRGLTQLELAEKLGVSFHTILRWEK-----ERRFPDVFHLSILADVLETSV 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEIRSPH 127 L+ + ++ + + P F + G+ + Sbjct: 59 AYLMGEKKNGSGKYYARDIDKEAVIAVPLLDSSFVACAGWGFGDMEGIEPDFCATLIVGK 118 Query: 128 NGIYAIQTQD-TRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKV 184 + I I + K + SM G + +N + GD + + R GD+ K Sbjct: 119 DDIGRIGGKCPYAIKVEGDSMQEAGIPDGARISVNPEEPIYNGDAVLVKWGRRGDLAVKW 178 Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSDIE------------WIARILWAS 222 ++L S N YP + +IE +++ S Sbjct: 179 YYEY-NDRVELRSSNPAKYPPIIITKEEIEQEAEAGNIDFFRICGKVMVVS 228 >gi|308389172|gb|ADO31492.1| putative regulatory protein [Neisseria meningitidis alpha710] Length = 215 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 20/215 (9%) Query: 17 AERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 +NL+ LA AG+ + G R P + TN + L D Sbjct: 1 MSEYNLSTQQELADFAGVSKGLVGQWFNGQT-GLGRKP----LVAFEKKTNFSPRWLADG 55 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP--------H 127 + ++ + + + G + PE S Sbjct: 56 YGEKYKNQTVLDRLSDGIADGIAFE---LLNVQAAAGVGYFNDDFPEPLSRLVFSEHWVR 112 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P + GD L +++A G+ + + G++ K L S Sbjct: 113 EHLGGTGKAVKLISVKGDSMSPTFNHGDFLFVDTAADFYNGEGVYVFAAAGELRVKRLQS 172 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 ++++S N Y + + D ++ R++ Sbjct: 173 SVRGGMNVISDNRNYNAEYLPPDDWAAVKVCGRVV 207 >gi|190151419|ref|YP_001974330.1| putative transcriptional repressor [Streptococcus phage PH15] gi|190014413|emb|CAQ57799.1| hypothetical protein [Streptococcus phage PH15] Length = 249 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 37/241 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + T L K G+ + ++ R P +++F + A + Sbjct: 10 IGEKIKQYRLENGWTQQELGSKIGISKNAIGNYEKGI-----RSPKKDTMFDLANAFGIS 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--------------- 113 I L D T +EI PP + + Sbjct: 65 IDDLFPQIRKDSYTKISTIQEIYNELKPPRQAKVLTYAKRQLNEQKNEEDTKKTEVSEDI 124 Query: 114 ----KWNTVGVPEIRSPHNGIYAIQTQ----------DTRHKTQDTSMLPLYRKGDILIL 159 ++ P + ++ + D + SM P Y GD++ + Sbjct: 125 IQLYSYDYYDHPASAGTGQYLNDVRVERIELPVNIDADFVIPIKGDSMEPDYHDGDLVFI 184 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218 +++++N G + D K L+ + ++ L SLN Y + D I + Sbjct: 185 QTSVELNDGVIGV-FNYNNDAYIKQLVIDKDQAY-LHSLNPAYKDMPITPETDFRIIGEV 242 Query: 219 L 219 + Sbjct: 243 V 243 >gi|256827170|ref|YP_003151129.1| SOS-response transcriptional repressor, LexA [Cryptobacterium curtum DSM 15641] gi|256583313|gb|ACU94447.1| SOS-response transcriptional repressor, LexA [Cryptobacterium curtum DSM 15641] Length = 212 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 49/225 (21%), Gaps = 26/225 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNL--TPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + +++ I+ E T + K GL P++ + R E Sbjct: 1 MNDLTKRQQQVLSCIEEFIEEKGYGPTVREVCNKLGLRSPSTVHVHLRALEEKGLINR-- 58 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + P + N Sbjct: 59 -------DPLKSRSITLTGAAAESMGQPSALVDTPYNVVTLPLVGDVAAGEPILAEENIT 111 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + + +P SM GD L++ G+ ++ Sbjct: 112 DHISLPTEIVG-------DAASFLLSVHGESMIEAGINDGDYLVVKEQPTAVNGEIVVAL 164 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N V D + +++ Sbjct: 165 ID-DGATVKRFYR-EADHIRLQPENSSMEPIIVR--DCTIVGKVV 205 >gi|300811721|ref|ZP_07092195.1| repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497297|gb|EFK32345.1| repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 206 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 33/224 (14%) Query: 3 SFSHK----KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 +H +I + I E P+ + GL TS +E + Sbjct: 1 MATHDSKQLEILQYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLTRLERKGYLIKDA 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L T+ + P + + + Sbjct: 61 TKPRALEITHAGLD-----------------ALGIKPKDIPVIGVVTAGQPILAVQDVED 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 +P + + + + TSM+ GD +I+ G+ ++ Sbjct: 104 YFPLPPNLA------SDAGELFMLRVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMT 157 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L N + ++ + +++ Sbjct: 158 DDGEATVKRFFK-EDFHYRLQPENDAMDPIILNH--VQILGKVV 198 >gi|315302947|ref|ZP_07873676.1| repressor LexA [Listeria ivanovii FSL F6-596] gi|313628688|gb|EFR97092.1| repressor LexA [Listeria ivanovii FSL F6-596] Length = 204 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 + I+E I + PS + GL +S +EG+ R P+ + Sbjct: 7 QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E E P + P + N + Sbjct: 67 IL--------------------SLEDEVETPNVVNIPIIGKVTAGMPITAIENIEEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + A +T + SM+ GD +I+ G+ ++ + Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPIILNN--VTILGKVI 197 >gi|134287468|ref|YP_001109635.1| putative phage repressor [Burkholderia vietnamiensis G4] gi|134131890|gb|ABO60584.1| putative phage repressor [Burkholderia vietnamiensis G4] Length = 235 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 60/224 (26%), Gaps = 18/224 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-- 64 + + ++ LAR+ GL + + ++ S S+ K L Sbjct: 6 DSVGARVSARRTELGISQKELARRVGLTQPTISALEKGKSNT---SGSIASLAKALGVVP 62 Query: 65 ------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + T+ E + GS G G + V Sbjct: 63 LWLETGLGDKEPGAREYRRVLDDGTQTSVIEFEVTVLASDGSCGGGAPGQTVIADVRTKV 122 Query: 119 -GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKP 175 V + I A M GD++ +SA ++ G Sbjct: 123 GPVIRDQRFFERIGASPEHVFAILGDGDGMARFIEHGDMVFFSSAGCDRLVTGQI-YAFE 181 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIA 216 K + R + L + N YP + +D E + Sbjct: 182 TIDGPRIKRVHRRADGHVILSNDNPDKNRYPDEIYSQADAEALH 225 >gi|291525632|emb|CBK91219.1| Predicted transcriptional regulator [Eubacterium rectale DSM 17629] Length = 244 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I E I ++ L LA + + + + +R E + +IL Sbjct: 4 IGEIISSYRKKKGLLQQDLADELAKEGITISYKAISNWERNLAE--PSVTIFYKVCRILG 61 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108 TN P + + +E + Y + G + Sbjct: 62 ITNMYEAYFGVNPADPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENA 121 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G V P+ + + + SM P + G I + V G Sbjct: 122 VSAGTGNFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHDGQIAWVLQQESVANG 181 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + + G+ K L + + I L+SLN Y V E ++ ++L Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYAPIKVSENDRLDIFGKVL 231 >gi|149184889|ref|ZP_01863206.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. SD-21] gi|148831000|gb|EDL49434.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. SD-21] Length = 211 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 17/218 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E +DR+ ++ L S ++R G + + + + G R + + + Sbjct: 2 EHVREELDRLIQQRRLGYSSISRMIGRNSSYIQQFIKR---GSPRKLDDDDRRTLASFFG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNTVGVPEIRS 125 + EIP+L S G T ++ + + Sbjct: 59 VDEQ----VLGGPPAPMRDGLIEIPVLNVDASAGFGAIAESETAHTRFGFDERWLARLTR 114 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKV 184 + +I SM P GD ++++++ Q D + + +V K Sbjct: 115 AKSASLSI------IHVLGDSMEPTLSDGDEVLVDASDQGSRLRDGIYVLRADDALVVKR 168 Query: 185 LISRRGRS-IDLMSLNCCYPVD-TVEMSDIEWIARILW 220 + + G I + S N YP V+ S+I+ + R++W Sbjct: 169 VTLKPGGRKITISSDNSAYPSWDDVDRSEIQVVGRVIW 206 >gi|154484852|ref|ZP_02027300.1| hypothetical protein EUBVEN_02570 [Eubacterium ventriosum ATCC 27560] gi|149733805|gb|EDM49924.1| hypothetical protein EUBVEN_02570 [Eubacterium ventriosum ATCC 27560] Length = 244 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I E I ++ L LA + + + + +R E + +IL Sbjct: 4 IGEIISSYRKKKGLLQQDLADELAKEGITISYKAISNWERNLAE--PSVTIFYKVCRILG 61 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108 TN P + + +E + Y + G + Sbjct: 62 VTNMYEAYFGVNPTDPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENA 121 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G V P+ + + + SM P + G I + V G Sbjct: 122 VSAGTGNFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHNGQIAWVLQQESVANG 181 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + + G+ K L + + I L+SLN Y V E ++ ++L Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYAPIKVGENDRLDIFGKVL 231 >gi|307319507|ref|ZP_07598934.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306894879|gb|EFN25638.1| putative phage repressor [Sinorhizobium meliloti AK83] Length = 263 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 64/260 (24%), Gaps = 53/260 (20%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + I + ++ +T LA + S + + G P + I K+ Sbjct: 2 ESIGQRIRQRRKQIGITQQQLADAFDIKRVSVTQWE-----GDITAPDRDKIAKLADLLG 56 Query: 67 ETICQ-----------------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 ++ D + G Sbjct: 57 CDPEWLLRGSGDPPRALDLGPGSRGSRAVVSSFDPDADEHSNDNAGAYTREHWRAHIKGA 116 Query: 104 FDSGVFPTGNKWNTV---------------------GVPEIRSPHNGIYAIQTQDTRHKT 142 G V N + A + + Sbjct: 117 VPEIDVKLGAGEGAVGDVINLPVSASSVSGHQVVAEWFIPDAYLRNEVRASPSHTLIMEV 176 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRR---GRSIDLMSL 198 SM P Y GD ++++ + D + + K L + ++S Sbjct: 177 VGDSMFPTYSPGDRVLVDLSQDRLVTDTVYAISDGYSEPQIKRLQRVPFSEPTEVRIISD 236 Query: 199 NCCYPVDTVEMSDIEWIARI 218 N TVE+S ++ I RI Sbjct: 237 NPNLETFTVELSRVKIIGRI 256 >gi|298695210|gb|ADI98432.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus ED133] Length = 227 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 61/230 (26%), Gaps = 31/230 (13%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 ++ S L+R+ G+ S + E + + K L + Sbjct: 1 MSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLMGFDISK 58 Query: 77 FSDGRTTE--------KKEKEIPLLYFPPSGSGGFFDSGVFP------------------ 110 + ++ +L + + + Sbjct: 59 NRKIENNDITSIYSKLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSEVDIYGC 118 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 E S + D K SM PL++ G I+ + + + G Sbjct: 119 ASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDGQI 178 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + GD K + + L+SLN Y + + + +++ Sbjct: 179 GVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLYFYDNESVRLVGKVI 226 >gi|317491564|ref|ZP_07950000.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921111|gb|EFV42434.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 230 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 24/231 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KI I ++ + +T LA G D + ++ +R S + KI + Sbjct: 2 NKIGNKIRQIRKAKKMTILELANAVGSDVGNISRLERGIQGY-----SDAMLRKIADGLS 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---------WNT 117 I +L DG T + + + G+ + Sbjct: 57 VHISELFS-TEDDGGTVDSYSVKSLSESGRKNVYRVDVLDVSASAGDGANTGDVVEIIRS 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + Q + SM GD++ +++ + GD + + Sbjct: 116 IEYVPEYAKTMFGNRPQGSVMLINVRGDSMTGTLEPGDLIFVDTLAKFFDGDGIYVFDFN 175 Query: 178 GDIVAKVLISRRGRSIDL--MSLNCCYPVDTVEMSD---IEWIARILWASQ 223 GD K L +L +S N Y +V + + ++L SQ Sbjct: 176 GDTFVKRLQKV---KFELKVISDNKAYETWSVTPDEMDMLHIQGKVL-ISQ 222 >gi|308176889|ref|YP_003916295.1| LexA repressor [Arthrobacter arilaitensis Re117] gi|307744352|emb|CBT75324.1| LexA repressor [Arthrobacter arilaitensis Re117] Length = 239 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 62/225 (27%), Gaps = 15/225 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPST 55 + KKI E I R ++ PS + GL S ++ ++ G R P Sbjct: 16 TIRQKKILETIQRSIGKNGYPPSMREIGDAVGLKSLSSVTHQLSQLEKLGYI--RRDPRR 73 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 +IL ++ +I L + G G Sbjct: 74 PRAMEILLPLQLAEDSEAAEASKPAEPVINEDAKIIELSTSADTTMVPL-VGRIAAGGPI 132 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 E + K SM+ GD +++ + GD + Sbjct: 133 LAEQSVEDVFSLPRQLVGHGELFMLKVSGDSMVDAAICDGDWVVVRRQQTADNGDIVAAL 192 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K +R L+ N Y + + + R++ Sbjct: 193 LD-EEATVKTF-RQRDGHTWLLPQNSRYEPILGDAA--TIMGRVV 233 >gi|215479925|ref|YP_002332313.1| c repressor [Pseudomonas phage MP38] gi|169409293|gb|ACA57697.1| c repressor [Pseudomonas phage MP38] Length = 219 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 21/224 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I A + LAR + + E P I A Sbjct: 3 EGLAARIRTCAALVG-SGDELARLTAIPRRTLEYYLTGDSE-----PKLARCVDIAKAAG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I L + E + G+ G + Sbjct: 57 VDIGWLATGEGEMHSAAPDEAAEDDTYAYV------PLYDARVSAGHGSWMEGARTLAKL 110 Query: 127 HNGIYAIQT------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Y+++ + + SM PL GD ++++ + + + + + Sbjct: 111 AFTRYSLRKQGLEIANMSAVRIGGDSMEPLLSDGDTVMIDHSCGEVRDEAIYVIRLDDHL 170 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWA 221 AK + + + ++S N Y V ++ I+ I R++WA Sbjct: 171 YAKRIQRQINGGLAIISANSAYQTMYVSKQDLEAIDIIGRVVWA 214 >gi|253688262|ref|YP_003017452.1| putative phage repressor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754840|gb|ACT12916.1| putative phage repressor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 244 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 62/244 (25%), Gaps = 37/244 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + L+ L G+ + K + T I ++ A + Sbjct: 5 LAERLKTARIAQGLSQKALGDLIGVSQAAIQKIEVGKAS------QTTKIVELSNALHVR 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L + + + + V + Sbjct: 59 PEWLANGEDPMRSDGVTRPVQESSIPPKSEWGTVSAWDSTTELSKDEVEVPFLKDIEFAC 118 Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163 G IQ++D SM P+ G + +++ Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178 Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + +L + G K L + G + + S N + S++E I R+ Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLVIHSFNRE-ADEEAYESEVEIIGRV 237 Query: 219 LWAS 222 W S Sbjct: 238 FWYS 241 >gi|256425817|ref|YP_003126470.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256040725|gb|ACU64269.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 250 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 13/208 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ T A K G+ + + E P TE + + +I Sbjct: 6 RNLKFLRKQKGWTQQEFADKLGIKRSLLGAYEEERAE-----PRTEVLELVSDMFRISID 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIRSPHN 128 LL + + +++ + F G +N E + Sbjct: 61 DLLRRDVGSQKESFLEKRRQQKMG--SDRQVIEFVPVKAAAGYLAGYNDDEFIEELNTFT 118 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI--LNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + SMLP I+ ++ ++ + ++ IV K ++ Sbjct: 119 LPMMGAGNYRAFEIAGDSMLPTPSGSVIVCHKVDGWDEIRNNEAYIVVTNREGIVYKRIL 178 Query: 187 S--RRGRSIDLMSLNCCYPVDTVEMSDI 212 R I L+S N Y V M D+ Sbjct: 179 KTNRSKSKITLVSDNPQYEPYAVGMEDV 206 >gi|206725168|dbj|BAG71784.1| repressor of rdgA and rdgB [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 37/244 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + L+ L G+ + K + T I ++ A + Sbjct: 5 LAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS------QTTKIVELSNALHVR 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L + + + + P + V + Sbjct: 59 PEWLANGEDPMRSSEVARSLQEPSIPPKSEWGTVSAWDSTTELSEDEVEVPFLKDIEFAC 118 Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163 G IQ++D SM P+ G + +++ Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178 Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + +L + G K L + G + + S N + S++E I R+ Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLVIHSFNRE-TDEEAYESEVEIIGRV 237 Query: 219 LWAS 222 W S Sbjct: 238 FWYS 241 >gi|312869029|ref|ZP_07729206.1| repressor LexA [Lactobacillus oris PB013-T2-3] gi|311095455|gb|EFQ53722.1| repressor LexA [Lactobacillus oris PB013-T2-3] Length = 207 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 36/227 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWP 53 M +K+ + I + H P+ + GL T + + IEG + P Sbjct: 1 MKPVKNKQLAVLNYIHKAVTEHGYPPTVREICSAVGLSSTSTVHGHINRLIEGGFLQKDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 S +I PL P + + Sbjct: 61 SKPRALEI------------------TPKGFDLLGVKPLQTKIPLLGVVTAGQPILAVED 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + +P +N +Y + TSM+ GD +I+ GD ++ Sbjct: 103 ATDYFPIPPSIQDNNDLY-------MLTIRGTSMIKAGILNGDQVIVRKQSTAKNGDIVI 155 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + R++ Sbjct: 156 AMNEDNEATCKRFFKEKD-RFRLQPENDTMDPIYLKN--VRILGRVV 199 >gi|330466449|ref|YP_004404192.1| LexA family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809420|gb|AEB43592.1| LexA family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 260 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 29/219 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 ++I + I ERH PS + G + P+S + K +G R Sbjct: 60 QRRILDFIRTWVERHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLRR--------- 110 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + +D+ E + P + P + + + +P Sbjct: 111 ----DPNRPRAVDVRSPGDIDDELSRSQRPTPAYVPMLGRIAAGGPILAEQSMEDVFPLP 166 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + + SML GD +++ + G+ + G+ Sbjct: 167 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPTADSGEIVAAMLD-GEA 218 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + LM N + D + R++ Sbjct: 219 TVKTYRRR-DGHVWLMPQNPAFDPI--PGDDATIMGRVV 254 >gi|317485979|ref|ZP_07944834.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6] gi|316922752|gb|EFV43983.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6] Length = 235 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 30/234 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + T + A + G++ + ++ P E + + + N + Sbjct: 4 IADRLVFLRGSA--TQAEFADRVGINVNTLRGYEKGRA-----LPGYEVLESLCSKLNVS 56 Query: 69 ICQ------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 R + E P+ G+ Sbjct: 57 PNWILTGQGNVLQEAPFSGLNETPRPLPQPELAEPMPSCDVDLIMIPMVEARLSAGHGSL 116 Query: 117 TV--GVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 V + + + + SM P DI++++ + RL Sbjct: 117 EVGGDSERSYAFRSDFLHRKGNPREMVLMRVSGDSMEPEIMDNDIVLIDQGKRDVTPGRL 176 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILW 220 I K + + L S N YP ++ I R+LW Sbjct: 177 YAIGFDEAIYLKRIDILP-GKVILKSTNAAYPPVELDTRGDCEDAFRVIGRVLW 229 >gi|301300079|ref|ZP_07206297.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852311|gb|EFK79977.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 242 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 75/241 (31%), Gaps = 29/241 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I + + L+ +A K G+ ++ + ++ IE E + ++L T Sbjct: 2 NNIGYRIKQRRKELKLSADVVAEKLGVSRSTVFRYEKGDIEKVPTTI-LEKLAEVLKTTP 60 Query: 67 ETICQLLDLPFSDGRTTEKKE------------------------KEIPLLYFPPSGSGG 102 + S + +E +Y Sbjct: 61 AYLIGWESENNSAYTKMLHESFDSLNSYRKRKVIDFSKLQLSEQNREKSKIYSINENDIV 120 Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 ++ + E D + SM+PL+ G I+ +N Sbjct: 121 YYVEVLGAVSAGTGEWLTDEQHEEVMVNNEPPEHDFALRVNGDSMIPLFSDGQIIYVNRV 180 Query: 163 IQVN--CGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTV-EMSDIEWIARI 218 +N ++++I GD K ++ R L+SLN Y +V E + + + + Sbjct: 181 DDLNMVRNEQIVIAELNGDAFVKKIVFDNNRKDCQLISLNKEYKPISVTENDEFKVVGLV 240 Query: 219 L 219 + Sbjct: 241 V 241 >gi|229174359|ref|ZP_04301892.1| LexA repressor [Bacillus cereus MM3] gi|228609216|gb|EEK66505.1| LexA repressor [Bacillus cereus MM3] Length = 223 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 18 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + K +P+ + Sbjct: 78 TK--PRAIEILGDNRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P A Q + SM GD++++ G+ ++ Sbjct: 120 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216 >gi|227892620|ref|ZP_04010425.1| LexA repressor [Lactobacillus ultunensis DSM 16047] gi|227865605|gb|EEJ73026.1| LexA repressor [Lactobacillus ultunensis DSM 16047] Length = 210 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 53/228 (23%), Gaps = 35/228 (15%) Query: 1 MTS------FSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M +I I + P+ + GL TS +E + Sbjct: 1 MKMPKKNSETKQLEILRYIYDTVDHRGFPPTVREICSAVGLSSTSTVHGHLARLERKGLL 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + + L T E KEK P + Sbjct: 61 IKDATKPRALEITAEG-----------------KEKLGIKPKEIPVVGVVTAGQPILAVE 103 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171 + +P + K SM+ GD +I+ N G+ + Sbjct: 104 DIDEYFPLPPDLENDA------GELFMLKVHGESMINAGILNGDNVIVRKQTSANNGEIV 157 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K L N + + + +++ Sbjct: 158 VAMTEENEATVKRFYK-ENGHYRLQPENDTMDPIILPK--VSILGKVV 202 >gi|319783655|ref|YP_004143131.1| LexA repressor [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169543|gb|ADV13081.1| LexA repressor [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 246 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 59/242 (24%), Gaps = 25/242 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--------- 51 M + ++ I + + PS K LD S + R R Sbjct: 1 MLTRKQHELLMFIHERLKESGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 52 -------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 P + K + + + + S Sbjct: 61 ARALEVLRLPDSIAPGLNAAKKFSPSVIQGSLGQGGALGRQIKPAPSRMPSPGNDDDAVS 120 Query: 99 GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDIL 157 G G + + + + + SM GD + Sbjct: 121 AVSIPVM-GRIAAGVPIDAIQHQTHSISVPPDMIMGGAHYALEVKGDSMIEAGIFDGDTV 179 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 I+ +A + G+ ++ + K + SI L + N Y ++ + Sbjct: 180 IIRNADTASPGEIIVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGK 238 Query: 218 IL 219 ++ Sbjct: 239 LV 240 >gi|295096361|emb|CBK85451.1| Predicted transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 233 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 56/222 (25%), Gaps = 20/222 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + T + LA+ G+ +S K G + ++ Sbjct: 8 ARLVEAMKEAGFTQASLAKAVGMSQSSIWKLTSGAASGSRKT------VQLSQVLGVRPE 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----------WNTVGV 120 L + +E G + Sbjct: 62 WLSSGEGPKYVVGLTEAEESISHEPARDTYRVDVLDVQASAGPGTFVSSEFIETIRAIEY 121 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E ++ SM GD + +++++ GD + + I Sbjct: 122 TEEQARLMFGNRPAHAIKVITVNGDSMEGTIDPGDFVFVDTSVNHFEGDGIYVFIFGKTI 181 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 K L + + L S N Y +E SD + ++L Sbjct: 182 HIKRLQMLKTSLMVL-SDNKLYNSWEIEESDEGQFYVLGKVL 222 >gi|257063792|ref|YP_003143464.1| SOS regulatory protein LexA [Slackia heliotrinireducens DSM 20476] gi|256791445|gb|ACV22115.1| SOS regulatory protein LexA [Slackia heliotrinireducens DSM 20476] Length = 230 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 64/226 (28%), Gaps = 18/226 (7%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIEGR--NRWPS 54 T + K+ + + I E + P+ + GL P++ + E +R P Sbjct: 9 TKLTKKQTAVLDCIIATIEETGIAPTVRDICDSIGLSSPSTVHVHLNNLEEKGYIHRDPL 68 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +L ++ + E + P + N Sbjct: 69 KSRCITVLRTSDGETYGGTAPKGQPAHNDFVGQGEFSNVVNLPVVGNVAAGVPILAEQNI 128 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 T+ +P + K + SM+ + GD +++ N GD ++ Sbjct: 129 QETIPLPTEIVG-------DSSSFLLKVRGDSMIEIGINDGDFVVVKEQPNANNGDIVVA 181 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R I L N V ++ +++ Sbjct: 182 L-VEDGATVKRFFKERD-HIRLQPENSTMEPIIV-RENVSIAGKVV 224 >gi|2498836|sp|Q47587|RDGA_PECCC RecName: Full=HTH-type transcriptional regulator rdgA gi|476017|gb|AAA24865.1| pectin lyase regulation DNA-binding protein [Pectobacterium carotovorum] gi|1094252|prf||2105355A rdgA gene Length = 244 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 62/244 (25%), Gaps = 37/244 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + L+ L G+ + K + T I ++ Sbjct: 5 LAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS------QTTKIVELSNNLRVR 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L + + + + P + V + Sbjct: 59 PEWLANGEGPMRSSEVTRSLQEPSIPPKSEWGTVSAWDSTTELSEDEVEVPFLKDIEFAC 118 Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163 G IQ++D SM P+ G + +++ Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178 Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + +L + G K L + G + + S N + SD+E I R+ Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLTIHSFNRE-TDEEAYESDVEIIGRV 237 Query: 219 LWAS 222 W S Sbjct: 238 FWYS 241 >gi|313667642|ref|YP_004047926.1| hypothetical protein NLA_2950 [Neisseria lactamica ST-640] gi|313005104|emb|CBN86536.1| hypothetical protein NLA_2950 [Neisseria lactamica 020-06] Length = 221 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 23/222 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + LT + A + N + P + + KIL+ + Sbjct: 8 NIRELLAKEELTIAEFADLIDEKVSRVNDVLSG-----KQRPPFDMVEKILSKFDVDANW 62 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPEIRSPHNG 129 L+ K L + G+ V VP Sbjct: 63 LIS------GKKNSKRNISSLTALSDDYAYIPMFDVEVSAGHGSTAYGVTVPANHLAFRK 116 Query: 130 IYAI-----QTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAK 183 + + + + SM P D L+++++ G+ +I+ + + K Sbjct: 117 DWLLHRGLHEQDLNIVTAKGDSMEPTISSKDTLLVDTSKTNPRDGNIYVIRS-SDVLWVK 175 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222 + + S+ L+S N YP + ++ DI+ I +++ S Sbjct: 176 RIQRQIDGSLLLISDNSTYPPMPLTLAEHPDIQIIGQVVQVS 217 >gi|193077634|gb|ABO12464.2| EsvI [Acinetobacter baumannii ATCC 17978] Length = 229 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 26/229 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M++ +++ AI + LAR AG+ + + ++ Sbjct: 1 MSTL-QERMSLAIKHYESETGKRFKNTDLARFAGVSRANVGLWVNGPTQ----ELEGSNL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG----FFDSGVFPTGNK 114 K + L T + P S F + Sbjct: 56 VKAAEFLGVSKDWLAGQSNKMDATKIDNNVSKKVAKLAPVLSWVQAGTFTNVQSVDLSMV 115 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRL 171 + +P+ + K Q S P + +GD ++++ + GD + Sbjct: 116 EEWLPLPDECT----------NCFYLKVQGVSNQPDFLEGDYILVDPDVYYSDMQSGDMV 165 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 +++ R D K L+ S L +LN + + + + + ++ +++ Sbjct: 166 VVR-RFEDATFKKLVIETDGSRYLQALNPKFEPNIIPLDEHCYFVGQVV 213 >gi|94988428|ref|YP_596529.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94541936|gb|ABF31985.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] Length = 251 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 62/244 (25%), Gaps = 37/244 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +I + + +T LA+ G + + + + K L + Sbjct: 4 LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQ--LDEVDIRKYAKALKIEPQQ 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---------NTVG 119 + P + + + + + V Sbjct: 62 LFDYSSSPTNPQVELIPSTLQKITSTSSQLEHKRQLNVLDYAETQLEQQNTVESNKDIVE 121 Query: 120 VPEIRSPHNGIY-----------------------AIQTQDTRHKTQDTSMLPLYRKGDI 156 P+ Y D SM P Y GD Sbjct: 122 EPQATYYTYNYYDHAASAGTGQYLNDVQVETIELPVDYDADFVIPVHGDSMEPKYHSGDY 181 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWI 215 + + ++++ GD + GD K L+ + L SLN Y V+ D I Sbjct: 182 VFVKLSVELADGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNSKYEDIPVDRDSDFRII 239 Query: 216 ARIL 219 ++ Sbjct: 240 GEVV 243 >gi|298291806|ref|YP_003693745.1| LexA transcriptional regulator [Starkeya novella DSM 506] gi|296928317|gb|ADH89126.1| transcriptional repressor, LexA family [Starkeya novella DSM 506] Length = 232 Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 59/228 (25%), Gaps = 11/228 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52 M + ++ I+ ++ + PS + L + ++ +R I Sbjct: 1 MLTRKQHELLLFINERLQKDGVPPSFEEMKEALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + ++ + + + G G Sbjct: 61 ARALEVIRLPEDAQPPKPAARPFAPNVIEGNLGRVRPSEDSEDVRRSVPIPVM-GRIAAG 119 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171 + + + + + + SM GD+ ++ N G+ + Sbjct: 120 TPISAIQSRDHTISMPPEMLAGGEHFALEVRGDSMVEAGILDGDLALIRKTDSANTGEIV 179 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K L + S+ L + N Y + +++ Sbjct: 180 VALIDDEEATLKRLRRKGA-SVALEAANPAYETRIFGPDRVRIQGKLV 226 >gi|229036523|ref|ZP_04189397.1| LexA repressor [Bacillus cereus AH1271] gi|228727800|gb|EEL78902.1| LexA repressor [Bacillus cereus AH1271] Length = 223 Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 18 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + E + P + + Sbjct: 78 TK--PRAIEILGDDRMD----------------AETQSVIQVPIIGKVTAGLPITAVESV 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P A Q + SM GD++++ G+ ++ Sbjct: 120 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216 >gi|259503106|ref|ZP_05746008.1| transcriptional repressor LexA [Lactobacillus antri DSM 16041] gi|259168972|gb|EEW53467.1| transcriptional repressor LexA [Lactobacillus antri DSM 16041] Length = 222 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 63/227 (27%), Gaps = 36/227 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWP 53 M +K+ + I + H P+ + GL T + + IEG + P Sbjct: 16 MKPVKNKQLAVLNYIHKAVNEHGYPPTVREICSAVGLSSTSTVHGHINRLIEGGFLQKDP 75 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 S +I PL P + + Sbjct: 76 SKPRALEI------------------TPKGFDLLGIKPLQTKIPLLGVVTAGQPILAVED 117 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + +P HN +Y + TSM+ GD +I+ GD ++ Sbjct: 118 ATDYFPIPPSIQDHNDLY-------MLTIRGTSMIKAGILNGDQVIVRKQSTAKNGDIVI 170 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ ++ + R++ Sbjct: 171 AMNEDNEATCKRFFKEKD-RFRLQPENDTMDPIYLKN--VKILGRVV 214 >gi|207857403|ref|YP_002244054.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709206|emb|CAR33539.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 231 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ N+ + LA G+D + ++ + G+ + + +++ ++ + Sbjct: 2 NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLSV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117 I +L G T K GN Sbjct: 58 DIAELFT-SDPKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + ++ + + SM P GD++ ++ +I GD + + Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y ++ ++L SQ Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223 >gi|258404327|ref|YP_003197069.1| putative phage repressor [Desulfohalobium retbaense DSM 5692] gi|257796554|gb|ACV67491.1| putative phage repressor [Desulfohalobium retbaense DSM 5692] Length = 211 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 19/212 (8%) Query: 14 DRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 R+ E +T S LA ++ ++ ++KR G + RW ++++ L Sbjct: 10 KRLQEALGITTQSELANLLQVNRSAVTQAKRTGEVPQ-RW-----VWQLSRHLGLNRTWL 63 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + +G G F G Sbjct: 64 ETGQGPMRPGPDTFATIPKVKARLSAGGGSFETEQ-----AVEGYYSFRRDWLRGKG--- 115 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 SM P ++GD ++++ Q + ++ K + Sbjct: 116 QPGCMVLMDIMGDSMEPELKEGDTVLVDQNQQEIYAGGMYAMGVEDTVMVKRVEKHPN-K 174 Query: 193 IDLMSLNCCYPVDTVEMSDIEW---IARILWA 221 + L+S N Y ++ +IE I RILW Sbjct: 175 LVLLSTNQRYTPIVLQGDEIEAVTCIGRILWV 206 >gi|330992626|ref|ZP_08316572.1| phage transcriptional regulator and peptidase [Gluconacetobacter sp. SXCC-1] gi|329760308|gb|EGG76806.1| phage transcriptional regulator and peptidase [Gluconacetobacter sp. SXCC-1] Length = 287 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 32/242 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ER T GLAR G+ F+ + + + + + + +++ + Sbjct: 45 HRLKALRERGGYTVRGLARDLGMGER-FSSYAFYENKLKKDFIPVDLVRRLVPLLTDRGD 103 Query: 71 QLLDLPFSD-----------------------GRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + + Y +GG Sbjct: 104 PPIAASEVWALCGIVPGATDLNESISRAERASMPVHDDDGAITVHEYDISPQAGGGAIVD 163 Query: 108 VFPTGNKWNTVGVPEIRSPHNGI---YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 G+ + R P N I + SM P + GD +++++ + Sbjct: 164 HTACGDGEGHPTLESWRIPRNFIRNYLPDTAGLAIIRVTGNSMEPEFLAGDRVLVDTGHR 223 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGR---SIDLMSLNCCYPVDTVEMSDIEWIARIL-- 219 + D + + +V K L+ I ++S+N YPVD V+ SD+ R++ Sbjct: 224 IPSPDGVYVLWNGMGVVIKQLMLVPNSRPPRIRIISVNPTYPVDEVDASDLVINGRVVGK 283 Query: 220 WA 221 W Sbjct: 284 WV 285 >gi|317506472|ref|ZP_07964273.1| LexA repressor [Segniliparus rugosus ATCC BAA-974] gi|316255233|gb|EFV14502.1| LexA repressor [Segniliparus rugosus ATCC BAA-974] Length = 279 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 61/219 (27%), Gaps = 21/219 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 ++I E I PS + AGL TS ++ + +G R + + Sbjct: 67 QQEILEIIRSSIRERGFPPSIREIGEAAGLASTSSVAHQLRSLQQKGYLR--REANRPRA 124 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + + P S+ + + + + + V + + +P Sbjct: 125 VDTRSISAPSGELTPESEEQPEQPTPTAVLVPLV----GRIAAGAPVLAEEHVEDLFPLP 180 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 SM+ GD +++ ++ + Sbjct: 181 RELVGTEAA-------FLLSVAGDSMVDAGIHDGDWVVIRQTKTPVYDGEIVAAMFEDEA 233 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L GR + L N Y + + +++ Sbjct: 234 TVKTLRRH-GREVWLYPENKAYQP--FRGEKAKILGKVI 269 >gi|288573116|ref|ZP_06391473.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568857|gb|EFC90414.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 234 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 81/227 (35%), Gaps = 23/227 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + R+ + LT + LAR +G+ + ++ + I S E+ + + ++ Sbjct: 4 GERLRRVRKDQGLTQTELARLSGVKQNTVSQVENDRI-----GLSIETWESLASVLGCSV 58 Query: 70 CQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTG---------NKWNTVG 119 L+ + + ++ + G + +++ Sbjct: 59 GYLVSGEGDRKSSGHRGSAGKLSFFQWIDVPILDDTAVACAGNGIGGMAEVYADAEDSIM 118 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD-RLLIKPRT 177 +P + A + + SM G +++N +V GD L+ R Sbjct: 119 LPGELLGTVSVNA-DRRPFIITVEGDSMEEAGILDGSQVVVNPEEEVYDGDPALVSFGRN 177 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219 GD K + +R ++++ S + YP + + DI+ I +++ Sbjct: 178 GDWAVKWVYWQRNGAVEIRSSSLRYPPRSFSVEDIDEGLFQIIGKVV 224 >gi|226362566|ref|YP_002780344.1| LexA repressor [Rhodococcus opacus B4] gi|226241051|dbj|BAH51399.1| LexA repressor [Rhodococcus opacus B4] Length = 220 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 29/218 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I I A H +PS + GL +S +K + E Sbjct: 22 QQRILATIRDWAATHGCSPSTRQIGDAVGLRSTSSVSKHLKSLEEK-------------- 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 L + K+ + P + + + + +P Sbjct: 68 GFLQRGSAMARQLDVRPFLSETKQGRSSDNNVTVPVVGDIAAGAPILAEEHADEMLTLPR 127 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD++++ + + G+ + G+ Sbjct: 128 ELVGS-------GTVFGLRVRGESMIDAAICDGDVVVVRRQDEAHSGEIVAAMID-GEAT 179 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL R + L N Y ++ D + +++ Sbjct: 180 VKVLRRR-DGHVFLEPRNPAYT--VIDADDAVILGKVV 214 >gi|311107226|ref|YP_003980079.1| repressor protein C2 domain-containing protein [Achromobacter xylosoxidans A8] gi|310761915|gb|ADP17364.1| repressor protein C2 domain protein [Achromobacter xylosoxidans A8] Length = 234 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 14/223 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + T + LAR G+ P + + + G + S + L + Sbjct: 5 GDRLKFAIKLRGTTAAALARHLGVAPQAIYQVQSGKS-GAMNASNAASAAEFLRVPIRWL 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 S + F + S P N + EI +G Sbjct: 64 TDGEGSTPSLLPKDTPAPVQPGPSDFDANVVPAPIGSRRVPLINYVQAGELTEIGVSFSG 123 Query: 130 I--------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + Q SM P +R GD +I++ + GD ++ + + Sbjct: 124 EAMEYLLTDLRLSDYSFALEIQGDSMSPEFRPGDRIIVDREVCPRPGDFVVARNGGYEAT 183 Query: 182 AKVLISR-----RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R +L+ LN YP E + I ++ Sbjct: 184 FKKYRPRGISETGHEVFELVPLNEDYPTLYSERQPLIVIGTMV 226 >gi|307245346|ref|ZP_07527434.1| Possible LexA family repressor/S24 family protease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254300|ref|ZP_07536139.1| Possible LexA family repressor/S24 family protease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258759|ref|ZP_07540491.1| Possible LexA family repressor/S24 family protease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853687|gb|EFM85904.1| Possible LexA family repressor/S24 family protease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862728|gb|EFM94683.1| Possible LexA family repressor/S24 family protease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867110|gb|EFM98966.1| Possible LexA family repressor/S24 family protease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 224 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 30/231 (12%) Query: 3 SFSHKKIW----EAIDRMAERHNLTP----SGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + +KI + +D ++ L + LA + P + +K + Sbjct: 1 MLTDEKIRVDFAKRLDIACKQKGLPEKGRGTQLASVCKVTPKAVSKWLNAETM--PSTAN 58 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + K LA T + L + ++PL+ + +G+ D G+ Sbjct: 59 IYLLAKFLAVTP----EWLTYGIGNVIPAAIGTTKVPLISYVQAGAWTGIDDFRETCGD- 113 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + + K + SM P + GDI+I++ ++ + G+ + Sbjct: 114 YEYI---------LTDLDVSGDAFALKIEGDSMEPEFIAGDIVIIDPKVEPHAGEFVAAI 164 Query: 175 PRTGDIVAKVLISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + +L+ LN + + +I I ++ Sbjct: 165 NGDYEATFKKYRPLEDLDEYGRQHFELVPLNPDWHSMSSLKQEIRIIGTMV 215 >gi|238027673|ref|YP_002911904.1| putative phage repressor [Burkholderia glumae BGR1] gi|237876867|gb|ACR29200.1| Putative phage repressor [Burkholderia glumae BGR1] Length = 241 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 66/240 (27%), Gaps = 26/240 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-- 65 I I H LT + G+ ++ +R R + +IL + Sbjct: 2 DIGSRIREKRLAHGLTLQQVGDMFGISRSAVASWERGAT--RPDQDKLPRLARILKTSIA 59 Query: 66 ------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 D P D TE + G+ Sbjct: 60 FLLSGERRHDIGGSDSPTDDDEVTEDNGYTLDAPPLRSDIVQISRFDTGGAMGSGIELRD 119 Query: 120 VPEIRS----------PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 P I + Y+ SM P++ GD LI++ I++ D Sbjct: 120 QPGIIETLRVSHEWINKNLKNYSSVENLCVVTGFGDSMRPMFNPGDPLIIDVGIKLVEYD 179 Query: 170 RLLIKPRTGDIVAKVLISRR-GRSIDL--MSLNCCYPVDTVEMS-DIEWIARI--LWASQ 223 + G+ K L + L S N Y + + E + R+ +W S+ Sbjct: 180 AIYFFRVDGEGFIKRLQRIPTEGGLVLRARSENASYETWDITPRMNFEVLGRVLKVWRSE 239 >gi|229075580|ref|ZP_04208567.1| LexA repressor [Bacillus cereus Rock4-18] gi|229098128|ref|ZP_04229076.1| LexA repressor [Bacillus cereus Rock3-29] gi|229104224|ref|ZP_04234896.1| LexA repressor [Bacillus cereus Rock3-28] gi|229117146|ref|ZP_04246525.1| LexA repressor [Bacillus cereus Rock1-3] gi|228666314|gb|EEL21777.1| LexA repressor [Bacillus cereus Rock1-3] gi|228679241|gb|EEL33446.1| LexA repressor [Bacillus cereus Rock3-28] gi|228685319|gb|EEL39249.1| LexA repressor [Bacillus cereus Rock3-29] gi|228707559|gb|EEL59745.1| LexA repressor [Bacillus cereus Rock4-18] Length = 223 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 18 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + K +P+ + Sbjct: 78 TK--PRAIEILGDDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P + Q + SM GD++++ G+ ++ Sbjct: 120 EEHFPLPASIVSGSD------QVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216 >gi|83589968|ref|YP_429977.1| SOS-response transcriptional repressor, LexA [Moorella thermoacetica ATCC 39073] gi|123739298|sp|Q2RJF5|LEXA_MOOTA RecName: Full=LexA repressor gi|83572882|gb|ABC19434.1| SOS-response transcriptional repressor, LexA [Moorella thermoacetica ATCC 39073] Length = 205 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 52/217 (23%), Gaps = 36/217 (16%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFKILA 63 + I + + PS + + GL ++ E R PS +IL Sbjct: 12 VLNYIRHFIDINGYPPSIRDICKATGLRSSSTVYNYLNKLEEKGYIRRDPSRSRAIEIL- 70 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T + P + N + +P Sbjct: 71 ------------------TPYPALTRAKNMVSVPLLGKITAGQPILAFENIEDVFPLPAD 112 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 A SM GD LI+ GD ++ + Sbjct: 113 L-------AGAENAFMLHVSGDSMIEAGILDGDYLIVRPQDTAENGDIVVAL-LEDEATV 164 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I+L+ N V + + +++ Sbjct: 165 KYFYRYPD-HIELVPANSSMQPLIVHK--VTILGKVV 198 >gi|167032741|ref|YP_001667972.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859229|gb|ABY97636.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 222 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 16/221 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + LT LA + D + ++ +R + S E + KI + Sbjct: 2 DIGQRIREARKARGLTLEALANQVDTDTGNLSRLERG-----KQGASQELLTKIFSVLQL 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVFPTGN--KWNTVGVPEI 123 + + + + + + G+ G+ + P Sbjct: 57 GVADVDHIRPKSAHPGLAYDWDNLVPACAEDNRVRKGYPLISWVIAGDWARSADHHHPAD 116 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDR-LLIKPRTG 178 + + + + SM P + +G ++++ + G ++ +G Sbjct: 117 AEWLSSTESAGANGFWLRVRGDSMTCAGNPSFPEGSLILVRPEADIVSGKYYVVQMLDSG 176 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K + G L LN Y ++ + +I R++ Sbjct: 177 EMTFKQYVEDAGIKY-LRPLNPGYRTIEIDGN-CRFIGRVI 215 >gi|15830439|ref|NP_309212.1| cI repressor protein [Escherichia coli O157:H7 str. Sakai] gi|7649844|dbj|BAA94122.1| CI protein [Enterobacteria phage VT2-Sakai] gi|13360645|dbj|BAB34608.1| putative cI repressor protein [Escherichia coli O157:H7 str. Sakai] Length = 217 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 54/212 (25%), Gaps = 18/212 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS I + Sbjct: 8 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 62 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 +P P + + S Sbjct: 63 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 117 Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P + G +++++ V GD + + + K LI Sbjct: 118 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 177 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ L LN YP+ + +++ Sbjct: 178 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI 207 >gi|210610461|ref|ZP_03288418.1| hypothetical protein CLONEX_00608 [Clostridium nexile DSM 1787] gi|210152454|gb|EEA83460.1| hypothetical protein CLONEX_00608 [Clostridium nexile DSM 1787] Length = 244 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I E I ++ L LA + + + + +R E + +IL Sbjct: 4 IGEIISTYRKKKGLLQQDLADELAKEGITISYKAISNWERNLAE--PSVTIFYKVCRILG 61 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108 TN P + + +E + Y + G + Sbjct: 62 ITNMYEAYFGVNPADPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENA 121 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G V P+ + + + SM P + G I + V G Sbjct: 122 VSAGTGNFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHDGQIAWILQQESVANG 181 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + + G+ K L + + I L+SLN Y V E ++ ++L Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYAPIRVSENDRLDIFGKVL 231 >gi|116618304|ref|YP_818675.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271496|sp|Q03WX0|LEXA_LEUMM RecName: Full=LexA repressor gi|116097151|gb|ABJ62302.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 212 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 54/220 (24%), Gaps = 28/220 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++ I + P+ + GL +S +R +G + K Sbjct: 8 KQIQVLRFIHEAQSENGYPPTVREIGEAVGLSSSSTIHGHIERLVKKGY--------LLK 59 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + ++ D+ + K L + + Sbjct: 60 DASKPRARAIEVTDIGLEMLGISTTPGKIPVLGMVTAGT------PILAVEEEATEFFPI 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ SM+ + GD +I+ + GD ++ + Sbjct: 114 PDNLMQF------DGDLFMLNVHGDSMVNIGILDGDKVIVRKQENADNGDVVVAMNDNNE 167 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N ++ + + +++ Sbjct: 168 ATVKRFFR-EADHYRLQPENNSMAPIILQK--VSILGKVI 204 >gi|229162541|ref|ZP_04290502.1| LexA repressor [Bacillus cereus R309803] gi|228621020|gb|EEK77885.1| LexA repressor [Bacillus cereus R309803] Length = 215 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 61/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 10 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 69 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + E + P + + Sbjct: 70 TK--PRAIEILGDDRMD----------------AETQSVIQVPIIGKVTAGLPITAVESV 111 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + +P A Q + SM+ GD++++ G+ ++ Sbjct: 112 EDHFPLPASIV------AGADQVFMLRISGDSMIDAGIFDGDLVVVRQQQSAYNGEIVVA 165 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 166 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 208 >gi|41179362|ref|NP_958701.1| repressor protein cI [Bordetella phage BPP-1] gi|45569525|ref|NP_996594.1| repressor protein cI [Bordetella phage BMP-1] gi|45580776|ref|NP_996642.1| repressor protein cI [Bordetella phage BIP-1] gi|14278854|gb|AAK40284.1| repressor protein cI [Bordetella phage BPP-1] Length = 223 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 28/235 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + I+ + + +A K G+ + ++ ++ + PS E++ K Sbjct: 1 MTTLAQ-----NINYLFRVRGENATSIAEKVGISQPTLHRIQKGINQ----RPSGETLRK 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE-----IPLLYFPPSGSGGFFDSGVFPTGNKW 115 + T+ LL S G E + + P + G Sbjct: 52 LADYFGVTVDDLLTRDLSTGLPAEAIARANVREGPNIRGLVPLLTSVQAGEWCEIAG--- 108 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDR 170 T + + + + SM P Y GD++ ++ + GDR Sbjct: 109 -TFQRDDAKVWLPCPVKHGPRTFCLTVEGESMKNPGARPSYEPGDVIFVDPDVAAKPGDR 167 Query: 171 LLIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL--WA 221 ++ + + K + GR + L +LN + + ++ D ++ W Sbjct: 168 VVARLESQVAATFKQYLEEDGRKL-LKALNPDWQPRYIPINGDATICGVVIGKWV 221 >gi|329850633|ref|ZP_08265478.1| lexA repressor [Asticcacaulis biprosthecum C19] gi|328840948|gb|EGF90519.1| lexA repressor [Asticcacaulis biprosthecum C19] Length = 233 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 59/228 (25%), Gaps = 11/228 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +++ I + ++PS LA K+G+ +R I Sbjct: 1 MLTTKQRELLMFIHERIKEGGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + K+ + F + + G G Sbjct: 61 ARALEVIKLPDQATTSAPPRGRQAFVPQVVEGTRPAAEA-PRAVNDDTRELPLLGKIAAG 119 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171 +G R + + SM+ GD +++ G+ + Sbjct: 120 VPIEAMGQERDRLRVPESMLGAGEHYILEIDGDSMINAGILNGDFVVIKKTDTAQSGEII 179 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + SI L + N Y + +++ Sbjct: 180 VALVDDETATLKRLRKKGA-SIALEAANPAYKTQIYNDGQVRIQGKLV 226 >gi|227431629|ref|ZP_03913665.1| LexA repressor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352621|gb|EEJ42811.1| LexA repressor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 212 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 59/220 (26%), Gaps = 28/220 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++ I + P+ + GL +S +R +G +++ + Sbjct: 8 KQIQVLRFIHEAQSENGYPPTVREIGEAVGLSSSSTIHGHIERLVKKGYLLKDASKPRAR 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T + +IP+L +G+ + Sbjct: 68 AIEVT---------DIGLEMLGISTTPGKIPVLGIVTAGTPILAVE-----EEATEFFPI 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ SM+ + GD +I+ + GD ++ + + Sbjct: 114 PDNLMQF------DGDLFMLNVHGDSMVNIGILDGDKVIVRKQENADNGDVVVAMNDSNE 167 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N ++ + + +++ Sbjct: 168 ATVKRFFR-EADHYRLQPENNSMAPIILQK--VSILGKVI 204 >gi|307294055|ref|ZP_07573899.1| putative phage repressor [Sphingobium chlorophenolicum L-1] gi|306880206|gb|EFN11423.1| putative phage repressor [Sphingobium chlorophenolicum L-1] Length = 223 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 16/215 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++R+ + S L+R +P + + G R E + L Sbjct: 12 LERLIAERGDSYSDLSRLLNRNPAYIQQFIKR---GTPRKLDEEDRRILARYFGVAEDML 68 Query: 73 LDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +P L S G D TG + H Sbjct: 69 GGSTVRGTAPVKGRSLPSVITVPRLSLGASAGPGSLDEDERATGA----MAFDANWLRHL 124 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLIS 187 G+ + + + SM P GD ++++ D + + G ++ K + Sbjct: 125 GV--RPQKISIIRVDGESMAPTLSDGDEIMVDHDDDATRLRDGVYVLRLDGVLMVKRVAL 182 Query: 188 RRGRS-IDLMSLNCCYPV-DTVEMSDIEWIARILW 220 R ++S N YP ++ + + + R++W Sbjct: 183 GPRRGLFSVLSDNPHYPDWIDIDPALVVIVGRVVW 217 >gi|71280789|ref|YP_267128.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] gi|71146529|gb|AAZ27002.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] Length = 210 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 32/206 (15%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S L+ G+ PT+ + GRN+ P++ L+ N++ + Sbjct: 28 SELSEALGVSPTTIRTWR-----GRNKIPASAFRKAELSIQNDSDVKTDTRISLSFYEIS 82 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 L+ + F+ + I Sbjct: 83 ASAGGGALVEVEEQANLISFEPEWL-----------------NKEIGVNANDVFLMLVDG 125 Query: 145 TSMLPLYRKGDILILNSAIQVNCG--DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P + G ++++N G D + + +++ K L I + S N Y Sbjct: 126 DSMYPTLKNGAMIMVNKH---FNGLSDGIYVMRHEQNLLVKRLQMLPNGIIKVKSDNNLY 182 Query: 203 PVDTVEMS-----DIEWIARILWASQ 223 + DIE I R++W+ Q Sbjct: 183 EPWEINKENLDGTDIEIIGRVVWSGQ 208 >gi|330994780|ref|ZP_08318702.1| LexA repressor [Gluconacetobacter sp. SXCC-1] gi|329758041|gb|EGG74563.1| LexA repressor [Gluconacetobacter sp. SXCC-1] Length = 224 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 56/219 (25%), Gaps = 7/219 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ ID R +PS K L S + R R Sbjct: 1 MLTKKQHELLLFIDGHLRRTGFSPSFDEMKDALGLRSKSGIHRLISALEERGFLHRRHHR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L ++ P + E P G GN + Sbjct: 61 ARALEILRLPDIEIPPPPPVKAPGPSRPEGADAAFLVPVV---EVPFVGRVAAGNPIEAI 117 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 R + + SM GD++I+ Q G ++ Sbjct: 118 TTDTTRIAVPADMLGKASHYALEVMGDSMQDAGILDGDMVIIREGTQATDGQIVVALVDG 177 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++ K + G I L+ N Y + S + Sbjct: 178 DEVTLKRI-RHEGGEIALIPANTRYETRLLPASRVSVQG 215 >gi|315282148|ref|ZP_07870618.1| repressor LexA [Listeria marthii FSL S4-120] gi|313614213|gb|EFR87887.1| repressor LexA [Listeria marthii FSL S4-120] Length = 204 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 + I+E I + PS + GL +S +EG+ R P+ + Sbjct: 7 QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E E P + P + N + Sbjct: 67 IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAVENIDEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + A +T + SM+ GD +I+ G+ ++ + Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPILLNN--VTILGKVI 197 >gi|153971519|ref|YP_001393059.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|153971715|ref|YP_001393216.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955041|emb|CAL25393.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955200|emb|CAL25550.1| DNA-binding protein RDGA [Vibrio vulnificus] Length = 208 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 75/215 (34%), Gaps = 19/215 (8%) Query: 9 IWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I ++ E +++ L G+ ++ N+ + +PS + + ++ Sbjct: 3 LGGRIKKLREESLHISKKELGAILGVSQSAVNQWENGVN-----YPSQKRLIELSRVLKT 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T L++ S E EIP +GG F + ++ V P Sbjct: 58 TYEWLVNGTTSSHNDG--SEYEIPFYEHVNCSAGGGF------INDSEESILVSNHFIPL 109 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 G ++ + SM P I+ ++++ + ++ + + + K L Sbjct: 110 LGEMSLDK-VIAIRVHGDSMEPAISDRGIVFVDTSDKKIIDGKVYVYQQEDVLRVKRLEY 168 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 + + S N Y + + + + I R+L Sbjct: 169 SVNG-LMIKSYNDKYSDEKISKREFDSFCIIGRVL 202 >gi|169830890|ref|YP_001716872.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169637734|gb|ACA59240.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 245 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 57/215 (26%), Gaps = 35/215 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I R ER ++ LA A LD + +K + PS E++ +I + Sbjct: 2 DIGPRIARFRERAGMSQKKLAELAALDRSHISKIESGDT-----SPSLEALMRICESMGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T+ + K + G Sbjct: 57 TLAEFFGSDVQPVPVVAGVVKARIPIRTEDYYEGFLELDKKCRA---------------- 100 Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKV 184 D + SM+ +GD + + + G ++ K Sbjct: 101 ---------DFAVQVSGDSMVWAGINEGDFALCRRSEVAHNGQMVVAAIENNDWGGTIKY 151 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G+ L S N Y + + + ++ Sbjct: 152 YV-NNGKHYLLRSANPEYKDRIMPSNA-RIVGTVV 184 >gi|152991709|ref|YP_001357430.1| phage repressor protein [Sulfurovum sp. NBC37-1] gi|151423570|dbj|BAF71073.1| phage repressor protein [Sulfurovum sp. NBC37-1] Length = 217 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 14/221 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + +I E + + + +A+ + +F K+ ++ Sbjct: 1 MMNFNEIIEKLKDVISETKIGGKVFDKDVAQALNIPQATFATMKKRNSIPYEEILEFCAL 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 KI N + + + + G FD + T+ Sbjct: 61 KKIS--VNWLFFDQAVDMLKEQTEKFFQVRYFSDIRASAGGGAEVFDEN-------YETI 111 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + E HN + T+ SM P + G I+ ++ D + I T Sbjct: 112 TIDEKIM-HNMVGMGNTELEAIHVDGESMEPTLQDGSIVFVDRNQTNINKDGIFIASTTA 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + R ++L+S N Y + + ++ + +++ Sbjct: 171 GLFIKRIRQRADGMVELISDNKAYSPEVLAPDEVSIVGKVV 211 >gi|300918422|ref|ZP_07135020.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] gi|300414397|gb|EFJ97707.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] Length = 229 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 13/213 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I E + R + T + A G+ P ++ R + KI A Sbjct: 12 EQLIVEFLKR---DRHTTKAAFAELCGISPAQLSQLLGGNSH---RNIGDKMARKIEQAL 65 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L + S G + + EI + Sbjct: 66 -------DRPFGWLDSPHNAPGSIKSELEYVGSVRPGAVPVVGEAILGIDGMIDMLEIHA 118 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 IY+ K + SM P + G+ +++ QV+ GD + ++ + G + K++ Sbjct: 119 GWLQIYSADRDAYGLKVKGDSMWPRIQSGEYVVIEPNTQVHTGDEVFVRTKDGHNMIKIM 178 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R S+N + T+ IE + + Sbjct: 179 SKTRDGDYQFSSVNSDHRPITLSPDSIEKMHFV 211 >gi|23099124|ref|NP_692590.1| LexA repressor [Oceanobacillus iheyensis HTE831] gi|29427760|sp|Q8EQM5|LEXA_OCEIH RecName: Full=LexA repressor gi|22777352|dbj|BAC13625.1| transcriptional repressor of SOS regulon [Oceanobacillus iheyensis HTE831] Length = 207 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 MT S + I++ I + PS +A GL ++ + +R +G R P Sbjct: 1 MTKLSKRQQMIFDFIKSEVKLKGYPPSVREIAVAVGLASSSTVHGHLERLENKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +I+ + + + + + P++ +G N Sbjct: 61 TKPRAIEIID------------LEMEQQLPKDEARYAPVIGKVTAGIPIT------AVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 V +P + + SM GD++I+ G+ ++ Sbjct: 103 IEEFVPIPSSSAGPDD------NVFVLVIDGESMIEAGILDGDMVIVKQQNTAVNGEIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N + + + +++ Sbjct: 157 AMTEENEATVKRFFKEEN-RIRLQPENATMEPLFYDN--VTILGKVI 200 >gi|220929115|ref|YP_002506024.1| SOS-response transcriptional repressor, LexA [Clostridium cellulolyticum H10] gi|254809092|sp|B8I2Q1|LEXA_CLOCE RecName: Full=LexA repressor gi|219999443|gb|ACL76044.1| SOS-response transcriptional repressor, LexA [Clostridium cellulolyticum H10] Length = 215 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 25/221 (11%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59 ++I + + + + PS + G TS + ++ +G + P+ Sbjct: 8 KQQEILDYVYKCVHENGYPPSVREICSAVGFKSTSTVHSYLQKLIDKGHLQKDPTKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 KIL T++ + P + N +T Sbjct: 68 KILNKTSQVQENRTNKEGYYTSREMVD---------VPVVGRVTAGQPILAVENITDTFP 118 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + + Q SM+ D +++ N GD ++ Sbjct: 119 LPVD-------FVQNSDAFMLRIQGESMIDAGILDKDFVLVRQQSSANNGDIVVALI-GD 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N V ++ + +++ Sbjct: 171 EATCKTFYREKD-HIRLQPQNSSMEPIVV-KDELSILGKVI 209 >gi|15927573|ref|NP_375106.1| hypothetical protein SA1805 [Staphylococcus aureus subsp. aureus N315] gi|29028622|ref|NP_803311.1| cI-like repressor [Staphylococcus phage phi 12] gi|30043985|ref|NP_835522.1| similar to repressor [Staphylococcus phage phiN315] gi|49484242|ref|YP_041466.1| repressor [Staphylococcus aureus subsp. aureus MRSA252] gi|87160268|ref|YP_494620.1| phi77 ORF011-like protein, phage transcriptional repressor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195287|ref|YP_500091.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|118725059|ref|YP_908795.1| putative repressor [Staphylococcus phage phiNM3] gi|151222133|ref|YP_001332955.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|161510223|ref|YP_001575882.1| transcription regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253315033|ref|ZP_04838246.1| phi77 ORF011-like protein, phage transcriptional repressor [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729783|ref|ZP_04863948.1| bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258413673|ref|ZP_05681947.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258425108|ref|ZP_05687978.1| transcription regulator [Staphylococcus aureus A9635] gi|258434317|ref|ZP_05688718.1| transcription regulator [Staphylococcus aureus A9299] gi|258447839|ref|ZP_05695974.1| transcription regulator [Staphylococcus aureus A6224] gi|258452360|ref|ZP_05700370.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|282917348|ref|ZP_06325103.1| repressor [Staphylococcus aureus subsp. aureus D139] gi|282928797|ref|ZP_06336390.1| repressor [Staphylococcus aureus A10102] gi|283771163|ref|ZP_06344054.1| transcription regulator [Staphylococcus aureus subsp. aureus H19] gi|294849551|ref|ZP_06790293.1| repressor [Staphylococcus aureus A9754] gi|295428581|ref|ZP_06821208.1| repressor [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589944|ref|ZP_06948584.1| bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|13701792|dbj|BAB43085.1| SA1805 [Staphylococcus aureus subsp. aureus N315] gi|18920546|gb|AAL82286.1| cI-like repressor [Staphylococcus phage phi 12] gi|49242371|emb|CAG41083.1| putative repressor [Staphylococcus aureus subsp. aureus MRSA252] gi|87126242|gb|ABD20756.1| phi77 ORF011-like protein, phage transcriptional repressor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202845|gb|ABD30655.1| Helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|104641824|gb|ABF73166.1| putative repressor [Staphylococcus phage phiNM3] gi|150374933|dbj|BAF68193.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|160369032|gb|ABX30003.1| possible bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726518|gb|EES95247.1| bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257839626|gb|EEV64096.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257844691|gb|EEV68735.1| transcription regulator [Staphylococcus aureus A9635] gi|257849265|gb|EEV73246.1| transcription regulator [Staphylococcus aureus A9299] gi|257858936|gb|EEV81804.1| transcription regulator [Staphylococcus aureus A6224] gi|257859947|gb|EEV82785.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|269941472|emb|CBI49869.1| putative phage repressor protein [Staphylococcus aureus subsp. aureus TW20] gi|282318975|gb|EFB49330.1| repressor [Staphylococcus aureus subsp. aureus D139] gi|282589532|gb|EFB94620.1| repressor [Staphylococcus aureus A10102] gi|283459757|gb|EFC06848.1| transcription regulator [Staphylococcus aureus subsp. aureus H19] gi|285817683|gb|ADC38170.1| CI-like repressor, phage associated [Staphylococcus phage phiN315] gi|294823688|gb|EFG40115.1| repressor [Staphylococcus aureus A9754] gi|295127563|gb|EFG57202.1| repressor [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577072|gb|EFH95786.1| bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|312830369|emb|CBX35211.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315196785|gb|EFU27130.1| possible bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320143662|gb|EFW35440.1| peptidase S24-like domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329724424|gb|EGG60934.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus 21189] Length = 237 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 64/243 (26%), Gaps = 31/243 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I + I + N++ LA + P++ + PS I + Sbjct: 1 MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSN-----PSHGVIQR 55 Query: 61 ILA----------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 I T + + + ++ S G + Sbjct: 56 IADVFEVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINS 115 Query: 111 -------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 E I T D K SM P+++ G+I+ Sbjct: 116 YKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKVNGDSMEPMFKDGEII 175 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIA 216 + + G + + K + + L+SLN Y + I Sbjct: 176 FVEKTHNIKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKDYDDLHFYRNESVRLIG 233 Query: 217 RIL 219 +++ Sbjct: 234 KVI 236 >gi|46907529|ref|YP_013918.1| LexA repressor [Listeria monocytogenes serotype 4b str. F2365] gi|47094161|ref|ZP_00231880.1| LexA repressor [Listeria monocytogenes str. 4b H7858] gi|47096927|ref|ZP_00234504.1| LexA repressor [Listeria monocytogenes str. 1/2a F6854] gi|217964551|ref|YP_002350229.1| LexA repressor [Listeria monocytogenes HCC23] gi|224500626|ref|ZP_03668975.1| LexA repressor [Listeria monocytogenes Finland 1988] gi|226223904|ref|YP_002758011.1| SOS response regulator lexA [Listeria monocytogenes Clip81459] gi|254824638|ref|ZP_05229639.1| LexA repressor [Listeria monocytogenes FSL J1-194] gi|254828663|ref|ZP_05233350.1| LexA repressor [Listeria monocytogenes FSL N3-165] gi|254829941|ref|ZP_05234596.1| LexA repressor [Listeria monocytogenes 10403S] gi|254852646|ref|ZP_05241994.1| LexA repressor [Listeria monocytogenes FSL R2-503] gi|254898533|ref|ZP_05258457.1| LexA repressor [Listeria monocytogenes J0161] gi|254911976|ref|ZP_05261988.1| LexA repressor [Listeria monocytogenes J2818] gi|254932382|ref|ZP_05265741.1| LexA repressor [Listeria monocytogenes HPB2262] gi|254936303|ref|ZP_05268000.1| LexA repressor [Listeria monocytogenes F6900] gi|255026564|ref|ZP_05298550.1| LexA repressor [Listeria monocytogenes FSL J2-003] gi|255521013|ref|ZP_05388250.1| LexA repressor [Listeria monocytogenes FSL J1-175] gi|284801687|ref|YP_003413552.1| LexA repressor [Listeria monocytogenes 08-5578] gi|284994829|ref|YP_003416597.1| LexA repressor [Listeria monocytogenes 08-5923] gi|290893585|ref|ZP_06556568.1| LexA repressor [Listeria monocytogenes FSL J2-071] gi|300765457|ref|ZP_07075439.1| LexA repressor [Listeria monocytogenes FSL N1-017] gi|71658814|sp|Q720B9|LEXA_LISMF RecName: Full=LexA repressor gi|254809100|sp|B8DG25|LEXA_LISMH RecName: Full=LexA repressor gi|259494477|sp|C1L2K9|LEXA_LISMC RecName: Full=LexA repressor gi|46880797|gb|AAT04095.1| LexA repressor [Listeria monocytogenes serotype 4b str. F2365] gi|47014687|gb|EAL05643.1| LexA repressor [Listeria monocytogenes str. 1/2a F6854] gi|47017466|gb|EAL08280.1| LexA repressor [Listeria monocytogenes str. 4b H7858] gi|217333821|gb|ACK39615.1| LexA repressor [Listeria monocytogenes HCC23] gi|225876366|emb|CAS05075.1| Putative SOS response regulator lexA [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601066|gb|EEW14391.1| LexA repressor [Listeria monocytogenes FSL N3-165] gi|258605962|gb|EEW18570.1| LexA repressor [Listeria monocytogenes FSL R2-503] gi|258608893|gb|EEW21501.1| LexA repressor [Listeria monocytogenes F6900] gi|284057249|gb|ADB68190.1| LexA repressor [Listeria monocytogenes 08-5578] gi|284060296|gb|ADB71235.1| LexA repressor [Listeria monocytogenes 08-5923] gi|290556930|gb|EFD90461.1| LexA repressor [Listeria monocytogenes FSL J2-071] gi|293583938|gb|EFF95970.1| LexA repressor [Listeria monocytogenes HPB2262] gi|293589939|gb|EFF98273.1| LexA repressor [Listeria monocytogenes J2818] gi|293593876|gb|EFG01637.1| LexA repressor [Listeria monocytogenes FSL J1-194] gi|300513894|gb|EFK40959.1| LexA repressor [Listeria monocytogenes FSL N1-017] gi|307570883|emb|CAR84062.1| SOS-response transcriptional repressor [Listeria monocytogenes L99] gi|313609012|gb|EFR84748.1| repressor LexA [Listeria monocytogenes FSL F2-208] gi|328468589|gb|EGF39589.1| LexA repressor [Listeria monocytogenes 1816] gi|328475144|gb|EGF45928.1| LexA repressor [Listeria monocytogenes 220] gi|332311746|gb|EGJ24841.1| LexA repressor [Listeria monocytogenes str. Scott A] Length = 204 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 + I+E I + PS + GL +S +EG+ R P+ + Sbjct: 7 QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E E P + P + N + Sbjct: 67 IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIDEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + A +T + SM+ GD +I+ G+ ++ + Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPILLNN--VTILGKVI 197 >gi|213691736|ref|YP_002322322.1| SOS-response transcriptional repressor, LexA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254809088|sp|B7GQ64|LEXA_BIFLI RecName: Full=LexA repressor gi|213523197|gb|ACJ51944.1| SOS-response transcriptional repressor, LexA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457830|dbj|BAJ68451.1| LexA repressor [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 241 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 63/219 (28%), Gaps = 9/219 (4%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +K+ +AI + PS + AGL P+S ++ + +G R + + Sbjct: 21 QRKVLDAIRTHIDEQGFAPSFREIGNAAGLKSPSSVKHQLQVLEDKGFIRMNANKGRAIE 80 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + A + + + +T + + S G G Sbjct: 81 VVAGSAPNPEKPSQASEEATSTSNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQHV 140 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + SM+ GD +++ GD + + Sbjct: 141 DDVMRLPERLTGSGTLFMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLD-DEA 199 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + LM N Y + + + +++ Sbjct: 200 TVKTF-RKENGHVWLMPHNPAYSPI--DGTHATIMGKVV 235 >gi|30021787|ref|NP_833418.1| LexA repressor [Bacillus cereus ATCC 14579] gi|29897343|gb|AAP10619.1| LexA repressor [Bacillus cereus ATCC 14579] Length = 210 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 5 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 64 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 65 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 106 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 107 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 160 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 161 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 203 >gi|65320962|ref|ZP_00393921.1| COG1974: SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Bacillus anthracis str. A2012] gi|229092669|ref|ZP_04223817.1| LexA repressor [Bacillus cereus Rock3-42] gi|229140342|ref|ZP_04268897.1| LexA repressor [Bacillus cereus BDRD-ST26] gi|229157270|ref|ZP_04285350.1| LexA repressor [Bacillus cereus ATCC 4342] gi|228626334|gb|EEK83081.1| LexA repressor [Bacillus cereus ATCC 4342] gi|228642903|gb|EEK99179.1| LexA repressor [Bacillus cereus BDRD-ST26] gi|228690696|gb|EEL44473.1| LexA repressor [Bacillus cereus Rock3-42] Length = 215 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 10 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 69 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 70 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 111 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 112 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 165 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 166 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 208 >gi|328955378|ref|YP_004372711.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455702|gb|AEB06896.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 210 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 60/214 (28%), Gaps = 26/214 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + LA++ G + + + ++ + K+ +A TI L Sbjct: 6 ISEARHAKGWSQAELAKRIGTTQQQIARYESGDNDVKS-----SVLIKLSSALGVTISYL 60 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L L + + +Y Sbjct: 61 LGLENTVAAQPAPSFPIPVFGNIAAGTPREALLQSDI-------------VHDTEESLYR 107 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 T SM L+ G +++++ A+ V GD ++ D K + + Sbjct: 108 AHKSSFWLITSGNSMNKLFPDGSLVLIDPALPVQNGDVGVVFVNGEDATLKRIFFD-DDA 166 Query: 193 IDLMSLN--CCYPVDTVEMSD-----IEWIARIL 219 I L + Y + D I I +++ Sbjct: 167 IRLHPESYDPDYRDYVIRQDDPDAPEIRVIGKVV 200 >gi|269102614|ref|ZP_06155311.1| putative cI prophage repressor protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162512|gb|EEZ41008.1| putative cI prophage repressor protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 220 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 60/225 (26%), Gaps = 20/225 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + + + ++ LA G + + + R S + + Sbjct: 1 MDKKTEVGLRLKQFRAKRGISQKDLADLCGWGASRVSNYESGI-----RSISLDDADTLA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVG 119 Q+ + + I + PS F G Sbjct: 56 KHLGIKAYQI-----LFDDSELPELMNISTIDIQPSYQNSFPVLSSVQAGIWTEACEPYP 110 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRL-LIK 174 V I + + SM + +G ++++++ G + Sbjct: 111 VETITEWYQTTERTSKNSFWLRVHGDSMTSPTGISFPEGTLVLVDTERAAENGSLVAAKL 170 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L+ G+ L LN YP + + I I+ Sbjct: 171 TDVNEATFKKLMIDAGQRY-LKPLNPQYPTLPINGN-CRIIGVIV 213 >gi|319897552|ref|YP_004135749.1| phage repressor [Haemophilus influenzae F3031] gi|317433058|emb|CBY81431.1| putative phage repressor [Haemophilus influenzae F3031] Length = 238 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 71/226 (31%), Gaps = 23/226 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ E+ ++ + A+K G+ P + ++ + + P+ ++ K+ T I Sbjct: 13 ERMTKIIEKEGVSINSFAQKLGVSPPTISRWMKGEAD-----PTRSNLIKLAEQTGINIE 67 Query: 71 Q--------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-P 121 P ++ + + I G P Sbjct: 68 WLAIGAGPKYWQNPITEEIILRGQPQPIESSNDETFSVIEDCREVRISAGGGGFNDEYKP 127 Query: 122 EIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + SM P + G+ +I++ + + ++ + Sbjct: 128 YQTTKVEKAWLDSRRLKAEDCAMFLVSGDSMYPTLKDGEEIIVDRSKKELKDGKIFVLNN 187 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 G ++ K + I L+S N Y + + + I +++ Sbjct: 188 EGAMLVKKVQ-ITYNGITLISQNTEYAPIELNVEQANNLIVIGQVV 232 >gi|304413958|ref|ZP_07395375.1| putative prophage repressor CI [Candidatus Regiella insecticola LSR1] gi|304283678|gb|EFL92073.1| putative prophage repressor CI [Candidatus Regiella insecticola LSR1] Length = 215 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 15/216 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + LT LA++ + + + + R R+ E + Sbjct: 3 IADRVRSRRTELGLTQKDLAKRVDTSQQAIEQLENGKTK-RPRYLP-ELANALNCQLYWL 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + K + + + P N PE + Sbjct: 61 LNGGEHKDKPNNVAYITPHKRTKVYPLIRWAQARNWSESIEPYYNLSEIEEWPESAAHVM 120 Query: 129 GIYAIQTQDTRHKTQDTSMLPLY----RKGDILILNSAIQVNCGDRLL-IKPRTGDIVAK 183 + + + SM L + ++++++ +V G+ ++ + K Sbjct: 121 ------GEAFWLRVKGDSMTSLIGVSVSENTLILVDTGREVKDGNLVIAKLTDANEATFK 174 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G++ L LN YP+ + + + I ++ Sbjct: 175 KYIIDAGKNY-LKPLNPSYPLIPINGN-CQIIGVVI 208 >gi|170689612|ref|ZP_02880795.1| LexA repressor [Bacillus anthracis str. A0465] gi|190569392|ref|ZP_03022281.1| LexA repressor [Bacillus anthracis Tsiankovskii-I] gi|196034268|ref|ZP_03101678.1| LexA repressor [Bacillus cereus W] gi|196038260|ref|ZP_03105569.1| LexA repressor [Bacillus cereus NVH0597-99] gi|196044697|ref|ZP_03111932.1| LexA repressor [Bacillus cereus 03BB108] gi|217961124|ref|YP_002339692.1| LexA repressor [Bacillus cereus AH187] gi|218235898|ref|YP_002368503.1| LexA repressor [Bacillus cereus B4264] gi|225865673|ref|YP_002751051.1| LexA repressor [Bacillus cereus 03BB102] gi|227813477|ref|YP_002813486.1| LexA repressor [Bacillus anthracis str. CDC 684] gi|228909512|ref|ZP_04073337.1| LexA repressor [Bacillus thuringiensis IBL 200] gi|228916323|ref|ZP_04079893.1| LexA repressor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228922398|ref|ZP_04085704.1| LexA repressor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228928739|ref|ZP_04091775.1| LexA repressor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934970|ref|ZP_04097801.1| LexA repressor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228940774|ref|ZP_04103335.1| LexA repressor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228947308|ref|ZP_04109602.1| LexA repressor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228959879|ref|ZP_04121552.1| LexA repressor [Bacillus thuringiensis serovar pakistani str. T13001] gi|228973693|ref|ZP_04134273.1| LexA repressor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980251|ref|ZP_04140563.1| LexA repressor [Bacillus thuringiensis Bt407] gi|228986781|ref|ZP_04146910.1| LexA repressor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229047374|ref|ZP_04192972.1| LexA repressor [Bacillus cereus AH676] gi|229071195|ref|ZP_04204420.1| LexA repressor [Bacillus cereus F65185] gi|229080952|ref|ZP_04213466.1| LexA repressor [Bacillus cereus Rock4-2] gi|229123207|ref|ZP_04252413.1| LexA repressor [Bacillus cereus 95/8201] gi|229128963|ref|ZP_04257938.1| LexA repressor [Bacillus cereus BDRD-Cer4] gi|229146256|ref|ZP_04274631.1| LexA repressor [Bacillus cereus BDRD-ST24] gi|229151887|ref|ZP_04280085.1| LexA repressor [Bacillus cereus m1550] gi|229179975|ref|ZP_04307320.1| LexA repressor [Bacillus cereus 172560W] gi|229185925|ref|ZP_04313098.1| LexA repressor [Bacillus cereus BGSC 6E1] gi|229191777|ref|ZP_04318753.1| LexA repressor [Bacillus cereus ATCC 10876] gi|229197806|ref|ZP_04324524.1| LexA repressor [Bacillus cereus m1293] gi|229604907|ref|YP_002867876.1| LexA repressor [Bacillus anthracis str. A0248] gi|254682251|ref|ZP_05146112.1| LexA repressor [Bacillus anthracis str. CNEVA-9066] gi|254720877|ref|ZP_05182668.1| LexA repressor [Bacillus anthracis str. A1055] gi|254751264|ref|ZP_05203301.1| LexA repressor [Bacillus anthracis str. Vollum] gi|254756790|ref|ZP_05208819.1| LexA repressor [Bacillus anthracis str. Australia 94] gi|300119524|ref|ZP_07057075.1| LexA repressor [Bacillus cereus SJ1] gi|170666416|gb|EDT17196.1| LexA repressor [Bacillus anthracis str. A0465] gi|190559512|gb|EDV13508.1| LexA repressor [Bacillus anthracis Tsiankovskii-I] gi|195993342|gb|EDX57300.1| LexA repressor [Bacillus cereus W] gi|196024732|gb|EDX63404.1| LexA repressor [Bacillus cereus 03BB108] gi|196030668|gb|EDX69266.1| LexA repressor [Bacillus cereus NVH0597-99] gi|217063594|gb|ACJ77844.1| LexA repressor [Bacillus cereus AH187] gi|218163855|gb|ACK63847.1| LexA repressor [Bacillus cereus B4264] gi|225789216|gb|ACO29433.1| LexA repressor [Bacillus cereus 03BB102] gi|227005191|gb|ACP14934.1| LexA repressor [Bacillus anthracis str. CDC 684] gi|228585679|gb|EEK43779.1| LexA repressor [Bacillus cereus m1293] gi|228591716|gb|EEK49559.1| LexA repressor [Bacillus cereus ATCC 10876] gi|228597637|gb|EEK55284.1| LexA repressor [Bacillus cereus BGSC 6E1] gi|228603509|gb|EEK60985.1| LexA repressor [Bacillus cereus 172560W] gi|228631592|gb|EEK88223.1| LexA repressor [Bacillus cereus m1550] gi|228637315|gb|EEK93770.1| LexA repressor [Bacillus cereus BDRD-ST24] gi|228654508|gb|EEL10371.1| LexA repressor [Bacillus cereus BDRD-Cer4] gi|228660300|gb|EEL15934.1| LexA repressor [Bacillus cereus 95/8201] gi|228702369|gb|EEL54841.1| LexA repressor [Bacillus cereus Rock4-2] gi|228711936|gb|EEL63886.1| LexA repressor [Bacillus cereus F65185] gi|228723999|gb|EEL75346.1| LexA repressor [Bacillus cereus AH676] gi|228772953|gb|EEM21390.1| LexA repressor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228779483|gb|EEM27738.1| LexA repressor [Bacillus thuringiensis Bt407] gi|228786016|gb|EEM34015.1| LexA repressor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799817|gb|EEM46761.1| LexA repressor [Bacillus thuringiensis serovar pakistani str. T13001] gi|228812555|gb|EEM58882.1| LexA repressor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228818889|gb|EEM64953.1| LexA repressor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228824870|gb|EEM70671.1| LexA repressor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831058|gb|EEM76659.1| LexA repressor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228837273|gb|EEM82608.1| LexA repressor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228843521|gb|EEM88599.1| LexA repressor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228850289|gb|EEM95118.1| LexA repressor [Bacillus thuringiensis IBL 200] gi|229269315|gb|ACQ50952.1| LexA repressor [Bacillus anthracis str. A0248] gi|298723094|gb|EFI63985.1| LexA repressor [Bacillus cereus SJ1] Length = 223 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 18 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 78 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 120 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216 >gi|296454446|ref|YP_003661589.1| SOS-response transcriptional repressor LexA [Bifidobacterium longum subsp. longum JDM301] gi|296183877|gb|ADH00759.1| SOS-response transcriptional repressor, LexA [Bifidobacterium longum subsp. longum JDM301] Length = 241 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 61/220 (27%), Gaps = 11/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +K+ +AI + PS + AGL P+S ++ + +G R S I Sbjct: 21 QRKVLDAIRTHIDEQGFAPSFREIGNAAGLKSPSSVKHQLQVLEDKGFIRM-SANKGRAI 79 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGV 120 S+ T+ EI + S G G Sbjct: 80 EVMAGSAPNAEKPSQASEEATSASNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQH 139 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + SM+ GD +++ GD + + Sbjct: 140 VDDVMRLPERLTGSGTLFMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLD-DE 198 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + LM N Y + + + +++ Sbjct: 199 ATVKTF-RKENGHVWLMPHNPAYSPI--DGTHATIMGKVV 235 >gi|229489001|ref|ZP_04382867.1| repressor LexA [Rhodococcus erythropolis SK121] gi|229324505|gb|EEN90260.1| repressor LexA [Rhodococcus erythropolis SK121] Length = 241 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 32/222 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNK-SKRFGIEGRNRWPSTESI 58 ++I I + + TPS + GL ++ +K K +G R ++ Sbjct: 41 PLRQQQILMTIRDLVAANGCTPSTRQIGDAVGLRSTSTVSKHLKSLEEKGFLR--RGAAM 98 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L KE+ P + + + + Sbjct: 99 ARQLDVRPF--------------LVGAKEQSSSNTVTVPVVGDIAAGAPILAEEHADEVL 144 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + SM+ GD++++ + + G+ + Sbjct: 145 ALPRELVGS-------GTVFGLRVRGESMVDAAICDGDVVVVRRQDEAHSGEIVAAMID- 196 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ KVL R + L N Y ++ + +++ Sbjct: 197 GEATVKVLRRR-DGHVYLEPRNPAYS--VIDGDRAVILGKVV 235 >gi|301513073|ref|ZP_07238310.1| phage-like repressor [Acinetobacter baumannii AB058] Length = 248 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 59/242 (24%), Gaps = 31/242 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR--------------NRWPS 54 + + I L+ + L R G + + +RW Sbjct: 5 VSDRIQSRMAELKLSQADLMRLTGAARGTVSGWVNGSNNPSAKHIEALATALKTTSRWIL 64 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFP 110 T + L N ++ G GF F Sbjct: 65 TGKEKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSASVVEYGGDDGFIWIDVVEASFS 124 Query: 111 TGNKWNTVGVPEIRSPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGDILILNS 161 G ++ + K + SM GD++ ++ Sbjct: 125 CGTG-ESIEFHFDVINGKQPFPPSFFKQKNVHPDCMRIIKAKGDSMADKIDDGDLVGIDI 183 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218 + ++ G+ + K + G + L SLN Y V + + + R Sbjct: 184 SQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNFKVMGRQ 243 Query: 219 LW 220 W Sbjct: 244 FW 245 >gi|171779415|ref|ZP_02920379.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282032|gb|EDT47463.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 226 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 65/226 (28%), Gaps = 17/226 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FS +K + + + + + + LA++ + S+ + + + IFK+ Sbjct: 1 MFSGEK----LKALRQENGYSQADLAKRLQISRASYFNWENGKTKPNQKNLGQLSQIFKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTE-------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + +++ K + + P + G Sbjct: 57 DETYFLSEHDIVNTYLQLNPDNRLKLENYAKNLLKEQEIVKPLPKLYSYKVFEKLSAGTG 116 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 ++ + D SM P Y G+++++ G + Sbjct: 117 YSY--FGDGNYDTVFYDEQLDHDFASWVFGDSMEPTYLNGEVVLIKQTDFDYDG-AIYAV 173 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 174 DWDGQTYIKKIYREEDG-LRLVSLNKHYADKFAPYYENPRIIGKIV 218 >gi|283458467|ref|YP_003363093.1| SOS-response transcriptional repressor [Rothia mucilaginosa DY-18] gi|283134508|dbj|BAI65273.1| SOS-response transcriptional repressor [Rothia mucilaginosa DY-18] Length = 245 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 18/219 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +KI +AI E+ PS + GL +S ++ R G R + + Sbjct: 34 QQKILDAIRTEIEQKGYPPSMRQIGDMVGLASLSSVTHQLGRLETMGYIR--RDPKLPRA 91 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + +E + S E L P + + + + +P Sbjct: 92 IEVLDENGVGMHGSASSSLPELPNFEVGDEDLVPVPLVGRIAAGGPITAEQSVEDVLALP 151 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + K + SM+ GD +++ + GD + + Sbjct: 152 RQLVGN-------GKLFMLKVKGDSMIDAAICDGDWVVVREQHTADNGDIVAALLD-DEA 203 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KV + LM N Y + +++ Sbjct: 204 TVKVF-RQVDGHTWLMPRNSNYEPIM--GDRATVMGKVV 239 >gi|309379937|emb|CBX21348.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 234 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 4/171 (2%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 PS + I + + + + Y S G + P Sbjct: 64 PSEPTPVLIDPNLPHEAKDIHRPMTWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 123 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 N + +P +S SM + + +++ ++ Sbjct: 124 NGY---RLPFGKSTLKRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETTIRDGKIY 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 + G K LI + G ++ + S N YP +T + + I R+ W S Sbjct: 181 AFAQDGMFRVKYLIRQPGNNVLIRSHNSSFYPDETAPLDSLTVIGRVFWWS 231 >gi|294010738|ref|YP_003544198.1| LexA-family protein [Sphingobium japonicum UT26S] gi|292674068|dbj|BAI95586.1| LexA-family protein [Sphingobium japonicum UT26S] Length = 223 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 16/223 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + ++R+ + S L+R +P + + G R E + Sbjct: 4 TGEDPRMVLERLIAERGDSYSDLSRLLNRNPAYIQQFIKR---GTPRKLDEEDRRILARY 60 Query: 65 TNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L + +P L S G D G + Sbjct: 61 FGVAEEMLGGSAQRGAPPSRVRSLPSVVSVPRLSLGASAGPGSLDEDERAAG----LMAF 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGD 179 H G+ + + + SM P GD +++N D + + G Sbjct: 117 DANWLRHLGV--RPQKISIIRVDGESMAPTLSDGDEIMVNHDDDAERLRDGVYVLRLDGV 174 Query: 180 IVAKVLISRRGRS-IDLMSLNCCYPV-DTVEMSDIEWIARILW 220 ++ K + R ++S N YP ++ + + + R++W Sbjct: 175 LMVKRVAMGPRRGFFSVLSDNPHYPDWIDIDPALVVIVGRVVW 217 >gi|54025770|ref|YP_120012.1| LexA repressor [Nocardia farcinica IFM 10152] gi|71658805|sp|Q5YT43|LEXA2_NOCFA RecName: Full=LexA repressor 2 gi|54017278|dbj|BAD58648.1| putative repressor of the SOS regulon [Nocardia farcinica IFM 10152] Length = 243 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 18/221 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 +K+ E I PS + GL TS ++ + +G R P+ Sbjct: 28 QRKVLEVIRTSVSERGYPPSIREIGDAVGLTSTSSVAHQLRALERKGYLRRDPNRPRAVD 87 Query: 61 ILAATN-ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L + T ++ P F P + + Sbjct: 88 VRGLDEAVRAVTALPGAALEEPDTLAEDTGRPTPTFVPVLGRIAAGGPILAEQAVEDVFP 147 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + SM+ GD +++ GD + G Sbjct: 148 LPRELVG-------DGSLFLLRVVGQSMVDAAICDGDWVVVRQQNVAENGDIVAAMID-G 199 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K G+ + LM N + +D + +++ Sbjct: 200 EATVKTFKR-TGKDVWLMPHNPLFEPI--PGNDARILGKVV 237 >gi|228953973|ref|ZP_04116003.1| LexA repressor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805695|gb|EEM52284.1| LexA repressor [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 223 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 18 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 78 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 120 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216 >gi|226328124|ref|ZP_03803642.1| hypothetical protein PROPEN_02015 [Proteus penneri ATCC 35198] gi|225203828|gb|EEG86182.1| hypothetical protein PROPEN_02015 [Proteus penneri ATCC 35198] Length = 214 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 58/204 (28%), Gaps = 23/204 (11%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP----FSDGRTTEKKEKE 89 + ++ +T++I K + + RT +++E Sbjct: 5 TQGAVSQYLNGRT-----ALNTDTILKFASLLRVDPEDINPELKTLLDYVRRTGKEEEST 59 Query: 90 IPLLYFPPSGSGGF-FDSGVFPTGNK----------WNTVGVPEIRSPHNGIYAIQTQDT 138 L+ + G ++ + Sbjct: 60 KQLIPSTQNEHTTLKLMDVYAKAGPGGFINSDFPDTIKSIEFSPEKVFELFGRKSLKGIE 119 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM P D++ +++ + GD + I + K L +GR + + S Sbjct: 120 IINISGDSMSPAINPRDVVFVDTHNEFFDGDGVYIFSFENSLFIKRLQRVKGRKLAVKSD 179 Query: 199 NCCYPVDTVEMS---DIEWIARIL 219 N Y +E S D+ I +++ Sbjct: 180 NPAYETFYIEESEMYDLRIIGKVI 203 >gi|117926824|ref|YP_867441.1| phage lambda repressor protein. serine peptidase. MEROPS family S24 [Magnetococcus sp. MC-1] gi|117610580|gb|ABK46035.1| phage repressor protein, Serine peptidase, MEROPS family S24 [Magnetococcus sp. MC-1] Length = 235 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 15/199 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA-AT 65 + E + + ++ S LAR+ G+ P + R T ++L Sbjct: 25 NTLGERLRMALDHVGMSQSELARRVGIRPQTVQHVCAGHT---RRSGYTAEFAQVLGVRP 81 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L + +P+L + G ++ V V + Sbjct: 82 EWLAIGHGSLREFANEQNSGAVRRLPMLNWSNVIHWSQSGYQAQQMGEVYDLVEVTKPFG 141 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKV 184 H K SM P +G ++++ A ++ + K Sbjct: 142 NH---------AFALKVGGDSMEPKVPEGSTILVDPAYVAQNNYLVIAHLEGEPEATFKQ 192 Query: 185 LISRRGRSIDLMSLNCCYP 203 L+ G L LN YP Sbjct: 193 LVLEGGGRY-LKPLNPRYP 210 >gi|325849104|ref|ZP_08170596.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480349|gb|EGC83412.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 202 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 21/212 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + T LA+ + +S +R R PS + + K + + Sbjct: 3 VGVRLKQLRKSSGKTQRDLAKLLYVTASSIGMYERDE-----RTPSPDVLKKYADIFDVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L + K+ + + +T + Sbjct: 58 LDYILGHS--------RNLKKGEDYATINVYGSIPAGIPIEAIEDISDTEDISF------ 103 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + K + SM P Y +GD +IL G + + K +I Sbjct: 104 KDFDKNKTYIGLKVEGDSMYPKYLQGDTIILELTPDCESGTDAAVYVNGYEATLKTVIKN 163 Query: 189 RGRSIDLMSLNCCYPVDTVEMSD--IEWIARI 218 +I LM +N YP T D I+ + + Sbjct: 164 DNGTITLMPINTSYPPKTYGKDDDPIKILGIV 195 >gi|259501439|ref|ZP_05744341.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302190837|ref|ZP_07267091.1| phage repressor protein, putative [Lactobacillus iners AB-1] gi|259167188|gb|EEW51683.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] Length = 231 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 58/227 (25%), Gaps = 28/227 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL---------A 63 ID ++NLT L +K G +S ++ R+P E I +I Sbjct: 12 IDYFRRQNNLTMEELGQKLGKATSSISRWVSGE-----RYPKIEEIEQIAIFFNTDIYTL 66 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG----------FFDSGVFPTGN 113 + ++ + + + G G Sbjct: 67 IFGFNYNENSKSNILTVYNQLADIRKHKVYSYAQQQLDEQNSNLNKKRSIYVVGTSAAGE 126 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + D + SM P I+ + + G+ + Sbjct: 127 PIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGEIGIF 183 Query: 174 KPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K + I L S+N Y + + +++ Sbjct: 184 EINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 230 >gi|30263637|ref|NP_846014.1| LexA repressor [Bacillus anthracis str. Ames] gi|42782777|ref|NP_980024.1| LexA repressor [Bacillus cereus ATCC 10987] gi|47529044|ref|YP_020393.1| LexA repressor [Bacillus anthracis str. 'Ames Ancestor'] gi|47569215|ref|ZP_00239901.1| LexA repressor [Bacillus cereus G9241] gi|49479254|ref|YP_037766.1| LexA repressor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118478924|ref|YP_896075.1| LexA repressor [Bacillus thuringiensis str. Al Hakam] gi|165873206|ref|ZP_02217818.1| LexA repressor [Bacillus anthracis str. A0488] gi|167641981|ref|ZP_02400215.1| LexA repressor [Bacillus anthracis str. A0193] gi|170709289|ref|ZP_02899707.1| LexA repressor [Bacillus anthracis str. A0389] gi|177655861|ref|ZP_02937076.1| LexA repressor [Bacillus anthracis str. A0174] gi|206968656|ref|ZP_03229611.1| LexA repressor [Bacillus cereus AH1134] gi|206978303|ref|ZP_03239180.1| LexA repressor [Bacillus cereus H3081.97] gi|218904824|ref|YP_002452658.1| LexA repressor [Bacillus cereus AH820] gi|222097154|ref|YP_002531211.1| lexa repressor [Bacillus cereus Q1] gi|254733655|ref|ZP_05191371.1| LexA repressor [Bacillus anthracis str. Western North America USA6153] gi|296504190|ref|YP_003665890.1| LexA repressor [Bacillus thuringiensis BMB171] gi|301055183|ref|YP_003793394.1| LexA repressor [Bacillus anthracis CI] gi|33301235|sp|Q81Y06|LEXA_BACAN RecName: Full=LexA repressor gi|47605794|sp|P61606|LEXA_BACC1 RecName: Full=LexA repressor gi|71658806|sp|Q637D7|LEXA_BACCZ RecName: Full=LexA repressor gi|71658807|sp|Q6HFB0|LEXA_BACHK RecName: Full=LexA repressor gi|166224554|sp|A0RH75|LEXA_BACAH RecName: Full=LexA repressor gi|172046605|sp|Q81A92|LEXA_BACCR RecName: Full=LexA repressor gi|226736096|sp|B7JIC6|LEXA_BACC0 RecName: Full=LexA repressor gi|254809087|sp|B9IUL2|LEXA_BACCQ RecName: Full=LexA repressor gi|30258272|gb|AAP27500.1| LexA repressor [Bacillus anthracis str. Ames] gi|42738704|gb|AAS42632.1| LexA repressor [Bacillus cereus ATCC 10987] gi|47504192|gb|AAT32868.1| LexA repressor [Bacillus anthracis str. 'Ames Ancestor'] gi|47554089|gb|EAL12454.1| LexA repressor [Bacillus cereus G9241] gi|49330810|gb|AAT61456.1| LexA repressor (SOS response repressor) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418149|gb|ABK86568.1| SOS-response transcriptional repressor, LexA [Bacillus thuringiensis str. Al Hakam] gi|164711043|gb|EDR16608.1| LexA repressor [Bacillus anthracis str. A0488] gi|167510074|gb|EDR85486.1| LexA repressor [Bacillus anthracis str. A0193] gi|170125798|gb|EDS94707.1| LexA repressor [Bacillus anthracis str. A0389] gi|172079958|gb|EDT65062.1| LexA repressor [Bacillus anthracis str. A0174] gi|206735697|gb|EDZ52855.1| LexA repressor [Bacillus cereus AH1134] gi|206743507|gb|EDZ54937.1| LexA repressor [Bacillus cereus H3081.97] gi|218535278|gb|ACK87676.1| LexA repressor [Bacillus cereus AH820] gi|221241212|gb|ACM13922.1| LexA repressor (SOS response repressor) [Bacillus cereus Q1] gi|296325242|gb|ADH08170.1| LexA repressor [Bacillus thuringiensis BMB171] gi|300377352|gb|ADK06256.1| LexA repressor [Bacillus cereus biovar anthracis str. CI] gi|324327592|gb|ADY22852.1| LexA repressor [Bacillus thuringiensis serovar finitimus YBT-020] gi|326941407|gb|AEA17303.1| LexA repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 206 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 1 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 61 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 102 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 103 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 156 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 157 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 199 >gi|23335465|ref|ZP_00120701.1| COG1974: SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Bifidobacterium longum DJO10A] gi|23465871|ref|NP_696474.1| LexA repressor [Bifidobacterium longum NCC2705] gi|189439030|ref|YP_001954111.1| LexA repressor [Bifidobacterium longum DJO10A] gi|227547542|ref|ZP_03977591.1| repressor lexA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621152|ref|ZP_04664183.1| LexA repressor [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132470|ref|YP_003999809.1| lexa1 [Bifidobacterium longum subsp. longum BBMN68] gi|322689520|ref|YP_004209254.1| LexA repressor [Bifidobacterium longum subsp. infantis 157F] gi|322691477|ref|YP_004221047.1| LexA repressor [Bifidobacterium longum subsp. longum JCM 1217] gi|29427809|sp|Q8G4R6|LEXA_BIFLO RecName: Full=LexA repressor gi|229621208|sp|B3DQB4|LEXA_BIFLD RecName: Full=LexA repressor gi|23326573|gb|AAN25110.1| LexA repressor [Bifidobacterium longum NCC2705] gi|189427465|gb|ACD97613.1| SOS-response transcriptional repressor [Bifidobacterium longum DJO10A] gi|227211952|gb|EEI79848.1| repressor lexA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515613|gb|EEQ55480.1| LexA repressor [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773397|gb|ADQ02885.1| LexA1 [Bifidobacterium longum subsp. longum BBMN68] gi|320456333|dbj|BAJ66955.1| LexA repressor [Bifidobacterium longum subsp. longum JCM 1217] gi|320460856|dbj|BAJ71476.1| LexA repressor [Bifidobacterium longum subsp. infantis 157F] Length = 241 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 63/219 (28%), Gaps = 9/219 (4%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +K+ +AI + PS + AGL P+S ++ + +G R + + Sbjct: 21 QRKVLDAIRTHIDEQGFAPSFREIGNAAGLKSPSSVKHQLQVLEDKGFIRMNANKGRAIE 80 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + A + + + +T + + S G G Sbjct: 81 VVAGSAPNAEKPSQASEEATSTSNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQHV 140 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + SM+ GD +++ GD + + Sbjct: 141 DDVMRLPERLTGSGTLFMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLD-DEA 199 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + LM N Y + + + +++ Sbjct: 200 TVKTF-RKENGHVWLMPHNPAYSPI--DGTHATIMGKVV 235 >gi|317124566|ref|YP_004098678.1| SOS-response transcriptional repressor, LexA [Intrasporangium calvum DSM 43043] gi|315588654|gb|ADU47951.1| SOS-response transcriptional repressor, LexA [Intrasporangium calvum DSM 43043] Length = 247 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 56/220 (25%), Gaps = 11/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 +++ E I +R PS + GL S + + + R P+ + Sbjct: 25 QRRVLEVIRNSVDRRGYPPSMREIGDAVGLSSPSSVSHQLNALVAKGYLRRDPNRPRALE 84 Query: 61 ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 I++ + + + G G Sbjct: 85 IVSPDAGPASSGRRRGTSGVESGSGAQYDTETDSGDARPAAAYVPVLGQIAAGVPILAEE 144 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 V E P + K SM GD +++ GD + + Sbjct: 145 VVEDVFPLPRQIVGEGNLFLLKVVGDSMIEAAICDGDWVVVRQQPTAENGDIVAALLDS- 203 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + + L+ N + + + ++ Sbjct: 204 EATVKTFKRK-DGHVWLLPHNPEFSPI--DGDHATVLGKV 240 >gi|169632796|ref|YP_001706532.1| phage-like repressor [Acinetobacter baumannii SDF] gi|169151588|emb|CAP00365.1| hypothetical protein; putative phage related repressor [Acinetobacter baumannii] Length = 248 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 59/242 (24%), Gaps = 31/242 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR--------------NRWPS 54 + + I L+ + L R G + + +RW Sbjct: 5 VSDRIQSRMAELKLSQADLMRLTGAARGTVSGWVNGSNNPSAKHIEALATALKTTSRWIL 64 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFP 110 T + L N ++ G GF F Sbjct: 65 TGKEKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDVVEASFS 124 Query: 111 TGNKWNTVGVPEIRSPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGDILILNS 161 G ++ + K + SM GD++ ++ Sbjct: 125 CGTG-ESIDFHFDVINGKQPFPPGFFKQKNVHPDCMRIIKAKGDSMADKIDDGDLVGIDI 183 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218 + ++ G+ + K + G + L SLN Y V + + + R Sbjct: 184 SQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNFKVMGRQ 243 Query: 219 LW 220 W Sbjct: 244 FW 245 >gi|108799135|ref|YP_639332.1| LexA repressor [Mycobacterium sp. MCS] gi|119868250|ref|YP_938202.1| LexA repressor [Mycobacterium sp. KMS] gi|126434743|ref|YP_001070434.1| LexA repressor [Mycobacterium sp. JLS] gi|122977074|sp|Q1BA08|LEXA_MYCSS RecName: Full=LexA repressor gi|171769148|sp|A1UF04|LEXA_MYCSK RecName: Full=LexA repressor gi|171855232|sp|A3PYG6|LEXA_MYCSJ RecName: Full=LexA repressor gi|108769554|gb|ABG08276.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp. MCS] gi|119694339|gb|ABL91412.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp. KMS] gi|126234543|gb|ABN97943.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp. JLS] Length = 230 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 25/220 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 + I E I PS + GL TS ++ + +G R P+ Sbjct: 24 QRTILEVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVD 83 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + ++ + G + +P+L +G + + Sbjct: 84 V--RLSDEPATPVVTTDVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPL 135 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + K SM+ GD +++ + GD + G+ Sbjct: 136 PRELVG-------EGSLFLLKVVGDSMVDAAICDGDWVVVRQQAVADNGDIVAAMID-GE 187 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K RG+ + LM N + +D + +++ Sbjct: 188 ATVKTFKRSRGQ-VWLMPHNPAFEPI--PGNDAAVLGKVV 224 >gi|116627720|ref|YP_820339.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116100997|gb|ABJ66143.1| transcriptional regulator [Streptococcus thermophilus LMD-9] Length = 229 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 16/222 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68 + + + E ++ + +A+ G+ +S+ + + + S +F + + Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 69 ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +++++ + +E+E P + G + Sbjct: 64 EHEIVEVYLELNEENRQEALRFTKALLEEQEAEKKKAPVIPLYSYKVFERLSAGIGYTY- 122 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + D SM P Y G+++++ GD + G Sbjct: 123 -FGDGNYDEVFYDEEIDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDGD-VYAVDWDG 180 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I +I+ Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221 >gi|71736889|ref|YP_274369.1| prophage PSPPH03, Cro/CI family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557442|gb|AAZ36653.1| prophage PSPPH03, transcriptional regulator, Cro/CI family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 286 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 66/254 (25%), Gaps = 52/254 (20%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----------------------- 55 L+ +A +AG+ P + N + R+ + Sbjct: 28 ELKLSQKKIADEAGMTPAAVNLYFKGINPLNTRFAAVLSRMLQEPVERFSPRLAKEIAAL 87 Query: 56 -----------------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 + I K Q + + + Sbjct: 88 TNAAKPAASQSSVDIVQQMIAKHGKNLPADARQKIADAVEEVAANVPIAEVASRPGAVGD 147 Query: 99 GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI----------YAIQTQDTRHKTQDTSML 148 G PE+ +A SM Sbjct: 148 EVSIAHYDVRAAMGGGQIPHDYPEMLQDVRVSPRHLREMGVEFAEHFHLKMVTGWGQSMA 207 Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 P + D L+++ +I+ GD + + G + K L I ++S N +P +T++ Sbjct: 208 PTIKHRDPLLVDISIREFAGDGIYMFSWDGHLYIKRLQWMGDGKIKMISDNTRHPPETIK 267 Query: 209 MSDIEWIARI--LW 220 + + AR+ +W Sbjct: 268 VDETFIQARVLLVW 281 >gi|323489633|ref|ZP_08094860.1| LexA repressor [Planococcus donghaensis MPA1U2] gi|323396764|gb|EGA89583.1| LexA repressor [Planococcus donghaensis MPA1U2] Length = 206 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 54/226 (23%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M S + I I PS + GL ++ + R +G R Sbjct: 1 MKKVSKRQEDILTFIKEEVRLKGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIR--- 57 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + +TE+ + + P + N Sbjct: 58 ---------------RDPTKPRAIEVISTEEALIDKSPVLHVPLIGKVTAGMPITAIENV 102 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P+ + + SM GD +++ N GD ++ Sbjct: 103 EEYFPLPQSYGTEDD------HIFMLEIMGESMIEAGILNGDYVVVKQQQTANNGDIVVA 156 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N V + + +++ Sbjct: 157 MTAEDEATVKRFFR-EDNYFRLQPENSSMDPIIV--DQVSILGKVV 199 >gi|295102328|emb|CBK99873.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 208 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 24/221 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S + I + E+ +L+ LA + G +S K ++ + R E + L Sbjct: 1 MSDTDLSSRIRQRREQLSLSQEELAARMGYRSKSSITKLEKGINDL-PRA-KLEELAAAL 58 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + L DLP + E+ + S + G + N +GVP Sbjct: 59 DTTPAWLMGLADLP--CPPPGFEPLPEMARVPLVGSIACGTPIT---AEQNIECYIGVPA 113 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D +SM P GDI+ + +V G+ ++ + Sbjct: 114 AWHA----------DFALTCHGSSMAPTICDGDIVCIRRQPEVEQGEIAAVRI-GEEATL 162 Query: 183 KVLISRRGRSIDLMSLNCCY-PVDTV---EMSDIEWIARIL 219 K + G ++ L++ N P ++ +I+ R + Sbjct: 163 KHFHRQ-GETVMLLADNTAVCPPMVFAGPQLEEIQIEGRAV 202 >gi|289166201|ref|YP_003456339.1| phage repressor [Legionella longbeachae NSW150] gi|288859374|emb|CBJ13310.1| putative phage repressor [Legionella longbeachae NSW150] Length = 229 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59 M KKI + I + LT LA G L + N +R +R P I Sbjct: 1 MDMNIKKKIGQRIMIERKAKGLTRKALAELTGELKISRINNYERG-----DRTPGPTEIK 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-V 118 + + L+ L + K L+ D+ + +T V Sbjct: 56 LLADVLEVSASYLMCLTDNREGKITKSPGMGALIPVLDYKQAADLDNCIQKIKEDVDTRV 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRT 177 + S + +I + +D SM+P +R DILIL+ GD ++ Sbjct: 116 EFIPVSSVVSD--SIGKNAFALQIKDESMVPEFRINDILILDPETSPKPGDFVVALIEGE 173 Query: 178 GDIVAKVLI----SRRGRSIDLMSLNCCYPVDTVEMSDIE--WIA 216 +++ + S+ + +L++LN + V S+++ I Sbjct: 174 QEVIIRKYKQLSASKEAQQFELIALNEDWADIRVGFSEMKAQIIG 218 >gi|260426022|ref|ZP_05780001.1| putative phage repressor [Citreicella sp. SE45] gi|260420514|gb|EEX13765.1| putative phage repressor [Citreicella sp. SE45] Length = 224 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 15/224 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + AI+ ER L+ S ++ A +P+ K + R R +++ + + Sbjct: 2 DDLVSAIEAALERKGLSASAASQLAVGNPSMIKNLKNRRTD-RERSHPVDNLKALADVLD 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I S + + Y S P Sbjct: 61 LEIYFGPRREPSVVHEMAGELFALVPHYSTALLSDDHVLDL---AKGPDEHFAFPNEWFS 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVL 185 + Q +M P GD+++ + G + + L Sbjct: 118 RGRL--KPEQCILLTALSANMAPAICDGDLVMADRNATALRNGKVYAYQIEEDGLCIARL 175 Query: 186 ISRRGRSIDLMSLNCC---YPVDTVEMSDIE-----WIARILWA 221 GR + S N +P +IE + ++W+ Sbjct: 176 ELVPGRVLIARSENPDTEKFPPKYYFSEEIELVQAGILGEVIWS 219 >gi|89069553|ref|ZP_01156897.1| LexA repressor [Oceanicola granulosus HTCC2516] gi|89044888|gb|EAR50978.1| LexA repressor [Oceanicola granulosus HTCC2516] Length = 229 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 63/225 (28%), Gaps = 14/225 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + E I + + + PS K LD S + R R Sbjct: 1 MLTKKQLDLLEFIHKRLQADGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 I K+ A + + + +G+ G G Sbjct: 61 ARALEIVKLPDALQGRGFTPRVIEGDRPDASPPPAAKP----VEAAGAVELPVMGRIAAG 116 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171 + R + + + SM+ + GD++++ + GD + Sbjct: 117 VPIAAISEESSRVAVPQGMIGRGPHYALEVRGDSMIDMGINDGDVVVIRETATADDGDVV 176 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + + K + G SI L + N Y + + ++ Sbjct: 177 VALVEEQEATLKRFRRQ-GSSIALEAANPAYETRILPAAMVKVQG 220 >gi|170768934|ref|ZP_02903387.1| CI protein [Escherichia albertii TW07627] gi|170122006|gb|EDS90937.1| CI protein [Escherichia albertii TW07627] Length = 250 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 15/211 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K+ + + + + L +AR L +K E R ++ K Sbjct: 23 RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 80 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L D+ + T+ + L F G + + Sbjct: 81 LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 131 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E R IY+ + + SM P + G+ +++ +V GD + ++ G + Sbjct: 132 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTIEGHNM 191 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 K+L R S+N + T+ + Sbjct: 192 IKILGYDRDGEYQFTSINQDHRPITLPYHQV 222 >gi|229824068|ref|ZP_04450137.1| hypothetical protein GCWU000282_01372 [Catonella morbi ATCC 51271] gi|229786422|gb|EEP22536.1| hypothetical protein GCWU000282_01372 [Catonella morbi ATCC 51271] Length = 205 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 64/229 (27%), Gaps = 40/229 (17%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51 MT+ S K+ I I E + P+ + GL TS + +R G R Sbjct: 1 MTTLSTKQLTILSCIHEAIEANGYPPTVREIGAAVGLASTSTVHGHLARLERAGYI--IR 58 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 S ++ +E P + + Sbjct: 59 DASKTRAIELS--------------------PLAQEALGIQPQQIPLLGQVAAGAPILAI 98 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + + +P + ++ + + SM+ + GD + + N GD Sbjct: 99 EHATDYYPIPPGLERYE-----PSELFMLEIKGESMVNIGILDGDYITVRRQASANNGDV 153 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + + L N + + + +++ Sbjct: 154 VVAMTEDNEATCKTFFKKSD-HVILRPENDHMDDIILP--QVTILGKVV 199 >gi|85375768|ref|YP_459830.1| prophage MuMc02, S24 family peptidase [Erythrobacter litoralis HTCC2594] gi|84788851|gb|ABC65033.1| prophage MuMc02, peptidase, family S24 [Erythrobacter litoralis HTCC2594] Length = 211 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 78/218 (35%), Gaps = 17/218 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + +DR+ ++ L S ++R G + + + + G R + + + Sbjct: 2 EHVRDELDRLIQQRRLGYSAISRLIGRNSSYIQQFIKR---GSPRKLDDDDRRVLASFFG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNTVGVPEIRS 125 + EIP+L S G T ++ + + Sbjct: 59 VDEQ----VLGGPPAPIRDGLIEIPVLNVDASAGFGAIAESETAHTRFGFDERWLAALTR 114 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKV 184 + +I SM P GD ++++++ + D + + +V K Sbjct: 115 AKSASLSI------IHVLGDSMEPTLSDGDEVLVDASDEGSRLRDGIYVLRADDALVVKR 168 Query: 185 LISRRGRS-IDLMSLNCCYPVD-TVEMSDIEWIARILW 220 + + G I + S N YP V+ S+I+ + R++W Sbjct: 169 VTLKPGGRKITISSDNAAYPSWDDVDRSEIQVVGRVIW 206 >gi|325289876|ref|YP_004266057.1| SOS-response transcriptional repressor, LexA [Syntrophobotulus glycolicus DSM 8271] gi|324965277|gb|ADY56056.1| SOS-response transcriptional repressor, LexA [Syntrophobotulus glycolicus DSM 8271] Length = 204 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 59/227 (25%), Gaps = 38/227 (16%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53 M S ++I + I R + PS + GL ++ + + R P Sbjct: 1 MEDLSQRQQEILDIIKREIAKKGYPPSVREIGEAVGLTSSSTVHNHLNTLEQKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + ++L + + + P + N Sbjct: 61 TKPRAIEVLDGSGNSEMMHNTVH-------------------VPLLGQVTAGQPIMAVEN 101 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + +P + + Q SM D++++ N G+ ++ Sbjct: 102 IEDYFPLPYDMVKSD-------SVFMLRIQGESMIEAGILDHDLVLVRQQNTANNGEIVV 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N ++ + +++ Sbjct: 155 -AMIEDGATVKRFYKEKD-CIRLQPENSGMEPIY--ARNVTILGKVI 197 >gi|301019520|ref|ZP_07183686.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|299882171|gb|EFI90382.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] Length = 229 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 66/211 (31%), Gaps = 15/211 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K+ + + + + L +AR L +K E R ++ K Sbjct: 2 RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 59 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L D+ + T+ + L F G + + Sbjct: 60 LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 110 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E R IY+ + + SM P + G+ +++ +V GD + ++ G + Sbjct: 111 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNM 170 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 KVL R S+N + T+ + Sbjct: 171 IKVLGYDRDGEYQFTSINQDHRPITLPYHQV 201 >gi|315504932|ref|YP_004083819.1| transcriptional repressor, lexa family [Micromonospora sp. L5] gi|315411551|gb|ADU09668.1| transcriptional repressor, LexA family [Micromonospora sp. L5] Length = 250 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 33/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I E I ERH P+ + GL S S K+L Sbjct: 45 QQRILEVIREWVERHGYPPTVREIGAAVGLGSPS----------------SVTHHLKVLQ 88 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLY---FPPSGSGGFFDSGVFPTGNKWNTVGV 120 D R + L P + + + + Sbjct: 89 RLGLVRRAAHGPRAVDARPSASATAPDLDLCPGVRVPLVGAIAAGVPILAEEHVEEILAL 148 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + SM GD++++ + GD + + Sbjct: 149 PSELVG-------RGTLFALHVRGDSMIEAGIADGDVIVVRQQVSAENGDIVAALID-DE 200 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + R ++L+ N YP + + + +++ Sbjct: 201 ATVK-VYRSRDGKVELLPRNPLYP--VIPGDEAVILGKVV 237 >gi|300716279|ref|YP_003741082.1| regulatory protein [Erwinia billingiae Eb661] gi|299062115|emb|CAX59231.1| Regulatory protein [Erwinia billingiae Eb661] Length = 229 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 20/227 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++ + +T + LA + G D + ++ +R S + K+ A I Sbjct: 4 GERIRQLRKAKKMTLNALAMQVGSDVGNLSRLERGVQGY-----SDALLQKLADALAVPI 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L T + G V ++ Sbjct: 59 SALFSSGELKN-TGDLYSVSSLTEMGRDDVYRVDVLDVSASAGEGSPAREVVQVIRSIEY 117 Query: 130 IYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + SM GD++ ++ ++ GD + + GD+ Sbjct: 118 VRKEASVIFGNKPEAIVKLINVRGDSMEGTIEPGDLIFVDVSVPFFDGDGIYVFDFNGDM 177 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA-SQ 223 K L + + ++S N Y T+ + + R++ + SQ Sbjct: 178 FVKRLQKVKSE-LYVISDNPRYKEWTISAEEMAMLHVAGRVMLSQSQ 223 >gi|297565617|ref|YP_003684589.1| peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM 9946] gi|296850066|gb|ADH63081.1| Peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM 9946] Length = 217 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 17/207 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 EAI ++ +++ + +++ G P G G PS +++ + LA T Sbjct: 9 EAIKARLKQLDISQAEFSKRVGKSP---------GWAGARFLPSVDTMVRYLAYKEPTTL 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLL--YFPPSGSGGFFDSGVFPTGNK----WNTVGVPEIR 124 + + +E I L + + V G + Sbjct: 60 ERILDVLQWTPEEFSQETGIQLPGSEITATIPVTRYRIPVVDAGAGPPMWNENAEYITLH 119 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 P +++ + SM P + GD+++ + V G + + ++ K Sbjct: 120 IPDLK-GKPESELFAVRVGGDSMQPTLKDGDVVVFWTGGAVEPGRIVAVHVHWDGVIVKR 178 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD 211 L S L S N +P + +D Sbjct: 179 LQRY-NGSWYLYSDNPDHPPVPLTDND 204 >gi|312862721|ref|ZP_07722961.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322516899|ref|ZP_08069796.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|311101581|gb|EFQ59784.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322124522|gb|EFX96004.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 16/222 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68 + + + E ++ + +A+ G+ +S+ + + + S +F + + Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSILAELFGVAETYFLS 63 Query: 69 ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +++++ + +E+E P + G + Sbjct: 64 EHEIVEVYLELNEENRQEALRLTKALLEEQEAEKQKAPVISLYSYKVFERLSAGTGYTY- 122 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + D SM P Y G+++++ G + G Sbjct: 123 -FGDGNYDEVFYDEELDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AVYAVDWDG 180 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I +I+ Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221 >gi|9632491|ref|NP_049485.1| repressor protein CI [Enterobacteria phage 933W] gi|15800947|ref|NP_286963.1| putative repressor protein CI of bacteriophage BP-933W [Escherichia coli O157:H7 EDL933] gi|20065916|ref|NP_612999.1| CI protein [Stx2 converting phage I] gi|116222055|ref|YP_794110.1| repressor protein CI [Stx2-converting phage 86] gi|168748269|ref|ZP_02773291.1| CI protein [Escherichia coli O157:H7 str. EC4113] gi|168758909|ref|ZP_02783916.1| CI protein [Escherichia coli O157:H7 str. EC4401] gi|168772853|ref|ZP_02797860.1| CI protein [Escherichia coli O157:H7 str. EC4196] gi|168780276|ref|ZP_02805283.1| CI protein [Escherichia coli O157:H7 str. EC4076] gi|168788900|ref|ZP_02813907.1| CI protein [Escherichia coli O157:H7 str. EC869] gi|170783635|ref|YP_001648917.1| repressor protein CI [Enterobacteria phage Min27] gi|195938673|ref|ZP_03084055.1| hypothetical protein EscherichcoliO157_19988 [Escherichia coli O157:H7 str. EC4024] gi|208808906|ref|ZP_03251243.1| CI protein [Escherichia coli O157:H7 str. EC4206] gi|208811918|ref|ZP_03253247.1| CI protein [Escherichia coli O157:H7 str. EC4045] gi|208821053|ref|ZP_03261373.1| CI protein [Escherichia coli O157:H7 str. EC4042] gi|209398778|ref|YP_002271815.1| repressor protein CI [Escherichia coli O157:H7 str. EC4115] gi|254794287|ref|YP_003079124.1| putative repressor protein CI [Escherichia coli O157:H7 str. TW14359] gi|260847212|ref|YP_003224990.1| phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|260867233|ref|YP_003233635.1| putative repressor protein [Escherichia coli O111:H- str. 11128] gi|261227993|ref|ZP_05942274.1| putative repressor protein CI [Escherichia coli O157:H7 str. FRIK2000] gi|261258715|ref|ZP_05951248.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK966] gi|300940488|ref|ZP_07155062.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] gi|331645938|ref|ZP_08347041.1| putative repressor protein CI of bacteriophage [Escherichia coli M605] gi|4585402|gb|AAD25430.1|AF125520_25 repressor protein CI [Enterobacteria phage 933W] gi|12514300|gb|AAG55574.1|AE005295_14 putative repressor protein CI of bacteriophage BP-933W [Escherichia coli O157:H7 str. EDL933] gi|19911708|dbj|BAB87968.1| CI protein [Stx2 converting phage I] gi|115500865|dbj|BAF34095.1| repressor protein CI [Stx2-converting phage 86] gi|145312373|gb|ABP57827.1| repressor Cl [Enterobacteria phage phi24B] gi|163955729|gb|ABY49879.1| repressor protein CI [Enterobacteria phage Min27] gi|187771028|gb|EDU34872.1| CI protein [Escherichia coli O157:H7 str. EC4196] gi|188017192|gb|EDU55314.1| CI protein [Escherichia coli O157:H7 str. EC4113] gi|189002185|gb|EDU71171.1| CI protein [Escherichia coli O157:H7 str. EC4076] gi|189354375|gb|EDU72794.1| CI protein [Escherichia coli O157:H7 str. EC4401] gi|189371399|gb|EDU89815.1| CI protein [Escherichia coli O157:H7 str. EC869] gi|208728707|gb|EDZ78308.1| CI protein [Escherichia coli O157:H7 str. EC4206] gi|208733195|gb|EDZ81882.1| CI protein [Escherichia coli O157:H7 str. EC4045] gi|208741176|gb|EDZ88858.1| CI protein [Escherichia coli O157:H7 str. EC4042] gi|209160178|gb|ACI37611.1| repressor protein CI [Escherichia coli O157:H7 str. EC4115] gi|254593687|gb|ACT73048.1| putative repressor protein CI [Escherichia coli O157:H7 str. TW14359] gi|257762359|dbj|BAI33856.1| phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|257763589|dbj|BAI35084.1| putative repressor protein [Escherichia coli O111:H- str. 11128] gi|282935426|gb|ADB03777.1| putative repressor CI [Enterobacteria phage 32deltatox] gi|282935429|gb|ADB03779.1| putative repressor CI [Enterobacteria phage 27deltatox] gi|282935432|gb|ADB03781.1| putative repressor CI [Enterobacteria phage 22deltatox] gi|300454719|gb|EFK18212.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] gi|315619731|gb|EFV00251.1| helix-turn-helix family protein [Escherichia coli 3431] gi|331044690|gb|EGI16817.1| putative repressor protein CI of bacteriophage [Escherichia coli M605] Length = 235 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 66/211 (31%), Gaps = 15/211 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K+ + + + + L +AR L +K E R ++ K Sbjct: 8 RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 65 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L D+ + T+ + L F G + + Sbjct: 66 LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 116 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E R IY+ + + SM P + G+ +++ +V GD + ++ G + Sbjct: 117 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNM 176 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 KVL R S+N + T+ + Sbjct: 177 IKVLGYDRDGEYQFTSINQDHRPITLPYHQV 207 >gi|324114308|gb|EGC08278.1| peptidase S24 [Escherichia fergusonii B253] Length = 235 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 15/211 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K+ + + + + L +AR L +K E R ++ K Sbjct: 8 RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 65 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L D+ + T+ + L F G + + Sbjct: 66 LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 116 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E R IY+ + + SM P + G+ +++ +V GD + ++ G + Sbjct: 117 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNM 176 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 K+L R S+N + T+ + Sbjct: 177 IKILGYDRDGEYQFTSINQDHRPITLPYHQV 207 >gi|16803342|ref|NP_464827.1| LexA repressor [Listeria monocytogenes EGD-e] gi|224501754|ref|ZP_03670061.1| LexA repressor [Listeria monocytogenes FSL R2-561] gi|255028373|ref|ZP_05300324.1| LexA repressor [Listeria monocytogenes LO28] gi|25453095|sp|Q8Y7H7|LEXA_LISMO RecName: Full=LexA repressor gi|16410718|emb|CAC99380.1| lmo1302 [Listeria monocytogenes EGD-e] Length = 204 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 + I+E I + PS + GL +S +EG+ R P+ + Sbjct: 7 QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E E P + P + N + Sbjct: 67 IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIDEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + A +T + SM+ GD +I+ G+ ++ + Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQESSAINGEIVVAMTDENE 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPILLNN--VTILGKVI 197 >gi|78045221|ref|YP_360210.1| LexA repressor [Carboxydothermus hydrogenoformans Z-2901] gi|123743176|sp|Q3ACC4|LEXA_CARHZ RecName: Full=LexA repressor gi|77997336|gb|ABB16235.1| LexA repressor [Carboxydothermus hydrogenoformans Z-2901] Length = 204 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 67/225 (29%), Gaps = 41/225 (18%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTE 56 SH++ I I + + P+ + + GL S + K +G R P+ Sbjct: 6 LSHQEKKIISFIKQYLNENGYPPTIREICQGVGLSSPSTVHHHLKNLESKGYLQRNPTKP 65 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +++ EK L P N Sbjct: 66 RALELV-----------------------AEKAPEELLSIPLLGNVAAGYPTLAIENAEE 102 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + +P+ P + + + + SM GD++I+ GD ++ Sbjct: 103 EMQIPKSLFP-------EKELFALRIKGDSMIEEGILPGDVIIVKKQEVAENGDIVV-AY 154 Query: 176 RTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K I L+ N Y + + + + +++ Sbjct: 155 LEGEVTVKKFWKDSVNGVIKLIPANSKYEPIIINR-ETKILGKVI 198 >gi|332977088|gb|EGK13892.1| LexA repressor [Desmospora sp. 8437] Length = 211 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 65/232 (28%), Gaps = 41/232 (17%) Query: 1 MTSFSH-----KKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEG 48 M+ S + I + I + + PS + GL +S N+ ++ G+ Sbjct: 1 MSRLSQLSSRQQAILDYIKQEVRKKGYPPSVREIGEAVGLASSSTVHGHLNRLEKKGLI- 59 Query: 49 RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 R P+ ++L ++ I L P + Sbjct: 60 -RRDPTKPRAIEVLDQDHDLIPDLSSQTMM-----------------VPLVGKVTAGEPI 101 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 N VP + + SM+ GD +++ + Sbjct: 102 TAVENVEEYFPVPRRMVSPDD------SAFILSVRGNSMINAGVMDGDYVVVRQQKTADN 155 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + I L N + ++ + +++ Sbjct: 156 GDMIVAMTPENEATVKRFYKEKN-MIRLQPENDNMDPIWLP--EVTILGKVI 204 >gi|256369570|ref|YP_003107080.1| LexA repressor [Brucella microti CCM 4915] gi|255999732|gb|ACU48131.1| LexA repressor [Brucella microti CCM 4915] Length = 240 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 57/235 (24%), Gaps = 17/235 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I + ++ PS K LD S + R R + Sbjct: 1 MLTRKQHELLLFIHERLKETSIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105 + L L E + + Sbjct: 61 ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 G G + + + + + SM+ GD +I+ Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N G+ ++ + K + SI L + N Y + +++ Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234 >gi|237745238|ref|ZP_04575719.1| phage transcriptional repressor [Fusobacterium sp. 7_1] gi|229432467|gb|EEO42679.1| phage transcriptional repressor [Fusobacterium sp. 7_1] Length = 204 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 21/214 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + +++ +T LA + S + R + + KI Sbjct: 3 NIGEKIIFLRKKNKITQDELADALEISKQSILNYE-----TEKRQIPIDVLSKIATFFKI 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 I + + + + S G + + + V + + Sbjct: 58 PIEAFFSDNYDNFEEIKNNNTIKIPIISKVSAGLGVYGRN-----EILDWLEVSKSIAK- 111 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + SM P D++++ ++ G+ + D+ K Sbjct: 112 -------SATFATFIDGDSMEPKIHDDDLVLVQEVSMLDSGEIGIFFLN-DDVYCKKFQY 163 Query: 188 RR-GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + I L S+N Y V + I R++ Sbjct: 164 NEFTKEIILKSINPKYKPKEVTSDDEFRIIGRVV 197 >gi|226324976|ref|ZP_03800494.1| hypothetical protein COPCOM_02768 [Coprococcus comes ATCC 27758] gi|225206324|gb|EEG88678.1| hypothetical protein COPCOM_02768 [Coprococcus comes ATCC 27758] Length = 206 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 56/220 (25%), Gaps = 36/220 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I + P+ + L TS + + G R P+ Sbjct: 9 KQEEILEYIKSQILQRGFPPAVREICDAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + + P V N + Sbjct: 69 EILDDSFNLTRREMVQ--------------------IPIVGHVAAGEPVLAQENIEDYYP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 VP + + K Q SM+ GD +I+ GD ++ Sbjct: 109 VPTEYI------SSNKELFMLKVQGESMINAGILDGDYVIVEKQATAENGDMVVALID-D 161 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K I L N + D+ + ++ Sbjct: 162 GATVKTFYREE-GVIRLQPENDAMEPFIL--EDVTILGKV 198 >gi|323140532|ref|ZP_08075459.1| repressor LexA [Phascolarctobacterium sp. YIT 12067] gi|322414984|gb|EFY05776.1| repressor LexA [Phascolarctobacterium sp. YIT 12067] Length = 227 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 55/222 (24%), Gaps = 28/222 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M S + I + + P+ + GL ++ S + Sbjct: 25 MLSERQRNILKFVRTFINHKGYPPAVREIGAAVGLSSSA----------------SVHNH 68 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K L + + + L+ P + N T Sbjct: 69 LKKLQEYGFIQRDAAKPRALELMSESDAWRNKLLVPVP-LVGKVTAGVPILAVENIEETY 127 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P SM+ D +I N GD ++ Sbjct: 128 PIPRDLIG------CDDDVFMLSVCGDSMINAGILDHDYIIARKQNFANNGDIVVALIDG 181 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K RS+ L N Y V +I+ + +++ Sbjct: 182 EETTVKRYFREL-RSVRLQPENDKYEPI-VGSDNIKVLGKVI 221 >gi|300907046|ref|ZP_07124714.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|301304048|ref|ZP_07210165.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|300401193|gb|EFJ84731.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300840655|gb|EFK68415.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|315257709|gb|EFU37677.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] Length = 237 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 66 --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ T P + G +++++ V GD Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GYKPSFPDGMLILVDPEQAVEPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|94967612|ref|YP_589660.1| LexA repressor [Candidatus Koribacter versatilis Ellin345] gi|123256813|sp|Q1IU64|LEXA_ACIBL RecName: Full=LexA repressor gi|94549662|gb|ABF39586.1| SOS-response transcriptional repressor, LexA [Candidatus Koribacter versatilis Ellin345] Length = 210 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 39/231 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDP-TSFNK------SKRFGIEGR 49 M + + +++++ + + H +PS +A GL + +K SK Sbjct: 1 MVALTRRQREMYDFLCSFTDSHGYSPSFEEIAEGMGLSSLATVHKHIGNLESKGLLKRDY 60 Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 NR S E + K + + + + G G Sbjct: 61 NRARSIEVLR------------------------PKGQLKKSMAAAAAVATAGLPFLGRI 96 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCG 168 G + PE S G + + + SM GD +++ G Sbjct: 97 AAGQPIEAIENPETIS--LGDFTGSKEVFVLQVSGESMQDEHIVDGDYVLVERINTARDG 154 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + ++ D K + G ++ L N V ++ R++ Sbjct: 155 EIVVALVENSDTTLKRIYR-EGETVRLQPSNAKMQPIRVPAGSVQVQGRVI 204 >gi|306818499|ref|ZP_07452222.1| repressor LexA [Mobiluncus mulieris ATCC 35239] gi|304648672|gb|EFM45974.1| repressor LexA [Mobiluncus mulieris ATCC 35239] Length = 278 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 64/242 (26%), Gaps = 32/242 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS------KRFGIEGRNRWPSTES 57 +++ + + R++ + PS LA GL S + ++ + P Sbjct: 35 QREVLDTLYRLSRELSYPPSVRELASAMGLSSPSSVQHHLEVLVEKGYLRRVPNQPRALE 94 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--- 114 K+ T ++ + + ++ + P G Sbjct: 95 FVKLPEGTPAATTEMAPHAPEAPKVYSETQRNNQNNSSLKTTENISATIHTIPIGVADTA 154 Query: 115 ----------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 + E ++ + + SM GD + Sbjct: 155 DSNAIPLVGRIAAGIPITAEELVEDTFMLPRLFTGAGELFMLEVNGESMRDAAIMNGDWV 214 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++ + + GD + G+ K + I L+ N + + + Sbjct: 215 VVRAQNEARNGDIV-AAMLEGEATVKEFSRDK-GHIWLLPHNPSFEPI--PGDGATILGK 270 Query: 218 IL 219 ++ Sbjct: 271 VV 272 >gi|283795791|ref|ZP_06344944.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291076423|gb|EFE13787.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 244 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I E I ++ L LA + + + + +R E + +IL Sbjct: 4 IGEIISSYRKKKGLLQQDLADELAKEGVTISYKAISNWERNLAE--PSVTIFYKVCRILG 61 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108 TN P + + +E + Y + G + Sbjct: 62 ITNMYEAYFGVNPADPLSSLTDEGREKAMDYIHLLHASGMYEKQTAKIIPFRSIDIFENA 121 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G V P+ + + + SM P + G I + V G Sbjct: 122 VSAGTGNFLVDGPKETVCIDESILPEDTTFGVRISGDSMEPEFSDGQIAWVLQQESVANG 181 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + + G+ K L + + I L+SLN Y V D ++ ++L Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYAPIPVGEDDRLDIFGKVL 231 >gi|319649384|ref|ZP_08003542.1| LexA repressor [Bacillus sp. 2_A_57_CT2] gi|317399018|gb|EFV79698.1| LexA repressor [Bacillus sp. 2_A_57_CT2] Length = 207 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 59/227 (25%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 M S + I E I + PS + GL ++ + R +G R P Sbjct: 1 MVKLSKRQQDILEFIKEEVKLRGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL + + P + N Sbjct: 61 TKPRAIEILDLDESSHIPKVSAVN------------------VPIVGKVTAGQPITAIEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +PE +P + SM GD +I+ N GD ++ Sbjct: 103 VEEYFPLPERMAP------ADEHVFMLEIMGESMIEAGILDGDYVIVKQQSTANNGDIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N + + + +++ Sbjct: 157 AMTEEDEATVKRFFKEKD-YIRLQPENSTMEPIILRN--VSILGKVI 200 >gi|218898784|ref|YP_002447195.1| LexA repressor [Bacillus cereus G9842] gi|228902190|ref|ZP_04066353.1| LexA repressor [Bacillus thuringiensis IBL 4222] gi|228966592|ref|ZP_04127643.1| LexA repressor [Bacillus thuringiensis serovar sotto str. T04001] gi|218544192|gb|ACK96586.1| LexA repressor [Bacillus cereus G9842] gi|228793114|gb|EEM40666.1| LexA repressor [Bacillus thuringiensis serovar sotto str. T04001] gi|228857470|gb|EEN01967.1| LexA repressor [Bacillus thuringiensis IBL 4222] Length = 223 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 18 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 78 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P Q + SM GD++++ G+ ++ Sbjct: 120 EEHFPLPASIVSGAD------QVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216 >gi|118618684|ref|YP_907016.1| LexA repressor [Mycobacterium ulcerans Agy99] gi|166224637|sp|A0PT76|LEXA_MYCUA RecName: Full=LexA repressor gi|118570794|gb|ABL05545.1| repressor LexA [Mycobacterium ulcerans Agy99] Length = 244 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 27/226 (11%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPS 54 T+ + ++ I I PS + GL TS ++ + +G R P+ Sbjct: 32 TALTERQRTILNVIRTSVNDRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPN 91 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + D + T +P F P + Sbjct: 92 RPRAVDV--------RGADDTVTAAPVTDVAGSDALPEPTFVPVLGRIAAGGPILAEEAV 143 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P Q K SM GD +++ + GD + Sbjct: 144 EDVFPLPRELVG-------QGTLFLLKVVGESMVEAAICDGDWVVVRQQNVADNGDIVAA 196 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K G I LM N + +D + +++ Sbjct: 197 MID-GEATVKTFKR-AGGQIWLMPHNPAFDPI--PGNDATVLGKVV 238 >gi|295091860|emb|CBK77967.1| SOS-response transcriptional repressor, LexA [Clostridium cf. saccharolyticum K10] Length = 205 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 52/218 (23%), Gaps = 31/218 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I E I + P+ + L TS S S + L Sbjct: 9 KQQEILEYIKETILKKGYPPAVREICEAVKLKSTS----------------SVHSHLETL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P + + N +P Sbjct: 53 EKNGYIRRDPTKPRTIEIIDDCFNLARREVVNVP-LIGTVAAGTPLLAQENIETYFPIPS 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P+ + K + SM GD +++ G+ ++ Sbjct: 112 ELLPN-------KEIFMLKVKGDSMIEAGIFNGDQILVEKTNTAENGEIVVALLD-DSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V +++ + +++ Sbjct: 164 VKRFYR-EDGHYRLQPENASMEPIFV--DEVQILGKVI 198 >gi|260459230|ref|ZP_05807485.1| SOS-response transcriptional repressor, LexA [Mesorhizobium opportunistum WSM2075] gi|259034784|gb|EEW36040.1| SOS-response transcriptional repressor, LexA [Mesorhizobium opportunistum WSM2075] Length = 250 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 64/245 (26%), Gaps = 27/245 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + ++ I + + PS K LD S + R R P+ Sbjct: 1 MLTRKQHELLMFIHERLKESGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++L + L + + L S GN Sbjct: 61 ARALEVLRLPDSIAPGLNAAKKFSPSVIQGSLGQGGLGQGSLGRQIKPAPSRFAAAGNDD 120 Query: 116 NTVGVPEIRSPHNGIYAIQ--------------------TQDTRHKTQDTSM-LPLYRKG 154 + V I + + + + SM G Sbjct: 121 DAVPAVSIPVMGRIAAGVPIDAIQHQTHTISVPPDMIMGGEHYALEVKGDSMIEAGIFDG 180 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 D +I+ +A + G+ ++ + K + SI L + N Y ++ Sbjct: 181 DTVIIRNADTASPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKV 239 Query: 215 IARIL 219 +++ Sbjct: 240 QGKLV 244 >gi|326384481|ref|ZP_08206161.1| LexA repressor [Gordonia neofelifaecis NRRL B-59395] gi|326196826|gb|EGD54020.1| LexA repressor [Gordonia neofelifaecis NRRL B-59395] Length = 239 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 54/223 (24%), Gaps = 23/223 (10%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 S + ++ + E I + PS + GL TS + R Sbjct: 29 ASLTQRQREVLEVIRKSVRERGYPPSIREIGEAVGLTSTSSVAHQ-------LRTLERRG 81 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + K + D E +P F P + Sbjct: 82 LLKRDPHRPRAVNVRDDQRTPPAGAAEVDGDALPTPTFVPVLGRIAAGGPILAEQAVEEV 141 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P + SM+ GD +++ GD + Sbjct: 142 FPMPRELVG-------DGSLFMLRVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID 194 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + LM N + D + +++ Sbjct: 195 -GEATVKTFKRV-DGHVWLMPHNEHFEPI--PGDDAAVLGKVV 233 >gi|229061262|ref|ZP_04198612.1| LexA repressor [Bacillus cereus AH603] gi|228718133|gb|EEL69773.1| LexA repressor [Bacillus cereus AH603] Length = 213 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 60/226 (26%), Gaps = 36/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 10 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 69 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + + + P + + Sbjct: 70 TK--PRAIEILGDNRTETQSVIQ------------------VPIVGKVTAGLPITAVESV 109 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P A Q + SM GD++++ G+ ++ Sbjct: 110 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 163 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 164 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 206 >gi|210621011|ref|ZP_03292396.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275] gi|210154995|gb|EEA86001.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275] Length = 214 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 79/215 (36%), Gaps = 20/215 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + + + T + + + + + ++ + P E + K+ + + Sbjct: 11 NLQDRLKSLRKENKYTQEDIGKFLNMTTSGYGYYEQGKNK-----PPLEILQKLASLYSV 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ LL + K + + L +G + G+++ Sbjct: 66 SLDYLLGNDDVRLKNEIKIDNVVKLPVLGSVRAGTGGWAIEEVIGHEY-----------A 114 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + A + K + SM P +GD+ ++ V GD ++ + V K +I Sbjct: 115 FNLCADTSDYYYLKVKGDSMEPRISEGDLALVKKQSDVESGDLAIVLINGDEGVIKKVIK 174 Query: 188 RRGRSIDLMSLNCCYPVDTVE---MSDIEWIARIL 219 R ++L S N YPV + D++ I +++ Sbjct: 175 R-DDCLELHSFNAYYPVRVFSGQALQDVKIIGKVI 208 >gi|253582663|ref|ZP_04859884.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835533|gb|EES64073.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 259 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 14/223 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K+ + ++ +++ ++R+ G+ + K R P + I K + Sbjct: 1 MEKKKEFSKYLENFMKKNGYNLEQISRETGVPVATIGHYKTG-----RRTPKNDFIDKFV 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---GGFFDSGVFPTGNKWNTVG 119 + N + ++ + + + + G T+ Sbjct: 56 SGFNLNSQEKKEITMAIAIDRTPEVIKDNIFDLKNVKPIKLMEVPLFSSVSAGLGRETIA 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP---R 176 P I Q SM G I+++N+ + G+ + Sbjct: 116 EPIDFISIPKI--SGNNIVAILVQGDSMEDTILDGSIVVVNTELMPEIGEIGVFLTKGSD 173 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D + K L + L S N Y +E SDI +++ Sbjct: 174 HADGLVKRLKYK-NGEYVLESDNKEYDDLRIENSDITAYGKVI 215 >gi|329766961|ref|ZP_08258489.1| hypothetical protein HMPREF0428_00186 [Gemella haemolysans M341] gi|328837686|gb|EGF87311.1| hypothetical protein HMPREF0428_00186 [Gemella haemolysans M341] Length = 210 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 57/208 (27%), Gaps = 15/208 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + + N+ + LAR + P+S + + P + + I + L+ Sbjct: 10 KKCLKEKNIKQAELARSTKITPSSISDWSKGKYT-----PKRDKLQIIADYLSVNPAWLM 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + Y + G+ V + E H I Sbjct: 65 GESDIMDAESLDNSLNSNNDYLDDVSKLPILGTIC--AGDG---VYIEEEYDEHIFIDQG 119 Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191 D + + SM GD++ + V G + + K + + Sbjct: 120 MRADFALRVKGDSMIEAGIFDGDLVFIRQQSSVRNGKIAAVRLTEWNEASLKKIFVKNDN 179 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I L N Y ++E I + Sbjct: 180 VI-LYPCNPDYEPIV--TRNVEIIGECV 204 >gi|253999361|ref|YP_003051424.1| putative phage repressor [Methylovorus sp. SIP3-4] gi|253986040|gb|ACT50897.1| putative phage repressor [Methylovorus sp. SIP3-4] Length = 226 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 14/219 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + I E T + LA G+ + +K + S E+I K+ A Sbjct: 2 NEVGKLIKEALEHQGKTQAWLAEFCGVSNNAVSKWINGSGQ-----ISRENIRKVANALG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WNTVG 119 +LL+ D T ++ P VF G + Sbjct: 57 LRASELLNTDTDDSITVGFAQEFHFPENSYPVKPEKKGYPPVFGKGMGGLPDRIFTDEGR 116 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 V + + + + + SM P Y G+ ++ D +LIK TG+ Sbjct: 117 VSNGHDEYAEVLSGDDNAFVIRVEGNSMFPKYAHGEYALVEPNTVPEIEDDVLIKLSTGE 176 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ K LISRRG I L S N + S+I W+ + Sbjct: 177 VMLKRLISRRGG-IHLSSYNES-GTYDFQDSEIVWMYYV 213 >gi|229820919|ref|YP_002882445.1| SOS-response transcriptional repressor, LexA [Beutenbergia cavernae DSM 12333] gi|229566832|gb|ACQ80683.1| SOS-response transcriptional repressor, LexA [Beutenbergia cavernae DSM 12333] Length = 219 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 27/219 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I E PS + GL+ S ++ +G R Sbjct: 17 QRRVLETIRASVEERGYPPSMREIGEAVGLNSPSSVMHQLTVLERKGYLR---------- 66 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + P R + + P + + +P Sbjct: 67 -RDPRRPRAMEIVSPDDQAREERPYDVPTTPPSYVPLVGRIAAGGPILAEQVVEDVFPLP 125 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 K SM GD +++ G+ + G+ Sbjct: 126 RQLVG-------DGDLFLLKVVGDSMIEAAICDGDWVVVRQQPVAENGEIVAAMID-GEA 177 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L + + L+ N Y +D + + R++ Sbjct: 178 TVKTL-KQSADEVWLLPANASYAPI--PGNDAQILGRVV 213 >gi|307610924|emb|CBX00541.1| phage repressor [Legionella pneumophila 130b] Length = 229 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 16/225 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59 M +KI + I + LT LA G L + N +R +R P I Sbjct: 1 MDMNIKEKIGQRIMNERKAKGLTRKALAELTGELKTSRINNYERG-----DRTPGPTEIK 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-V 118 + A + L+ L + K L+ + + + ++ V Sbjct: 56 LLADALEVSASYLMCLTDNREGKMTKSLGMGALIPVLDYKQAADPVTYIQKIKDDIDSKV 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRT 177 + I + +D SM+P +R D++I++ GD ++ Sbjct: 116 EFVPVSKAVGE--KIGKNAFALQVRDESMMPEFRVDDVIIVDPDTCPKPGDFVIALVEGE 173 Query: 178 GDIVAKVLI----SRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216 +++ + S++ + +L++LN + V+ S + + Sbjct: 174 NEVIVRKYRQLSLSKKEQEFELVALNNDWADLRVDASTFKVLIVG 218 >gi|238925757|ref|YP_002939274.1| LexA repressor [Eubacterium rectale ATCC 33656] gi|238877433|gb|ACR77140.1| LexA repressor [Eubacterium rectale ATCC 33656] Length = 244 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I E I ++ L LA + + + + +R E + +IL Sbjct: 4 IGEIISTYRKKKGLLQQDLADELAKEGITISYKAISNWERNLAE--PSVTIFYKVCRILG 61 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108 TN P + + +E + Y + G + Sbjct: 62 ITNMYEAYFGVNPADPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENA 121 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G V P+ + + + SM P + G I + V G Sbjct: 122 VSAGTGNFLVDGPKETVHIDESILPEDTTFGVRISGDSMEPEFHDGQIAWVLQQESVANG 181 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + + G+ K L + + I L+SLN Y V E ++ ++L Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYTPIKVGENDRLDIFGKVL 231 >gi|254744713|ref|ZP_05202391.1| LexA repressor [Bacillus anthracis str. Kruger B] Length = 223 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 18 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 78 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 120 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +I+ Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKII 216 >gi|19919304|gb|AAM08234.1| putative phage repressor [Legionella pneumophila] gi|307608914|emb|CBW98314.1| putative phage repressor [Legionella pneumophila 130b] Length = 227 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 17/225 (7%) Query: 1 MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58 MT K+I + I + LT L AG L T ++ R P E I Sbjct: 1 MTELNIKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGV-----RTPGPEEI 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + A + + L+ L + K + P TG + Sbjct: 56 KLLAQALDVSPAYLMCLSDTQLHREAKNPSQ-----LIPLLDYRQACEAKLHTGA-EISG 109 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRT 177 I + T K D SM+P R D+L++ + GD + + Sbjct: 110 DKVFISVSTALQPELSTDAFALKITDDSMMPEIRINDVLVIEPCVLPEPGDFVAVKISGK 169 Query: 178 GDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + + +L++LN +P V D++ I ++ Sbjct: 170 PEAIICQYKKLSYTSSEFELLTLNDNWPNIKVSDDIDVKIIGVLV 214 >gi|309389303|gb|ADO77183.1| SOS-response transcriptional repressor, LexA [Halanaerobium praevalens DSM 2228] Length = 207 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 56/223 (25%), Gaps = 29/223 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M S K I + I + PS + + GL + S + Sbjct: 1 MDDLSKRQKSILQFIIDQIKSKGYPPSVREIGKAVGLKSPASVHSH------------LK 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K+ + + K EKE+ + + G N + Sbjct: 49 TLEKLNYLRRDPSKPRAIEVIYNSEPEAKNEKEMINIPVVGKVTAGSPI---LAEENIED 105 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 +P K SM GD +I D ++ Sbjct: 106 YFPLPLSYLKVGN-----NDLFMLKVSGNSMVEAGIHDGDYVIAEKQNYAKNKDIVIAL- 159 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K I L N Y +I+ + ++ Sbjct: 160 LEEEATVKRFFKEED-HIRLQPENPAYEPII--AKNIKILGKV 199 >gi|241889873|ref|ZP_04777171.1| putative prophage LambdaCh01, repressor protein [Gemella haemolysans ATCC 10379] gi|241863495|gb|EER67879.1| putative prophage LambdaCh01, repressor protein [Gemella haemolysans ATCC 10379] Length = 210 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 15/208 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + + N+ + LAR + P+S + + P + + + + L+ Sbjct: 10 KQCLKEKNIKQAELARSTNITPSSISDWSKGKYT-----PKRDKLIILAEYLSVNPDWLV 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + T K++ + + G+ V + E H I Sbjct: 65 GDSDTMDIETPKEKSFNTEDFSDDVSKLPILGTIC--AGDG---VYIEEEYDEHIFIDQG 119 Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191 D + + SM GD++ + V G + + K + + Sbjct: 120 MRADFALRVKGDSMIEAGIFDGDLVFIRQQSSVRNGKIAAVRLTDWNEASLKKIFVKNDN 179 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I L N Y ++E I + Sbjct: 180 VI-LYPCNPDYEPIV--TRNVEIIGECV 204 >gi|117924798|ref|YP_865415.1| phage lambda repressor protein. serine peptidase. MEROPS family S24 [Magnetococcus sp. MC-1] gi|117608554|gb|ABK44009.1| phage repressor protein, Serine peptidase, MEROPS family S24 [Magnetococcus sp. MC-1] Length = 220 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 9/215 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IFKILAAT 65 + + I E T LA + + T+ +K + R + + I T Sbjct: 3 LKDRIRTAREYAGFTQKELADRVDISQTAIHKLECGRSRSSRRTVAIALACGVNPIWLET 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 E L + + + F + + D+ +P + ++ Sbjct: 63 GEGDMILGGSRGAHQASDIGAPYYTGAMDFLQAPVISWGDAKFWP--DDKESMETDTPLG 120 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKV 184 + + K Q SM + +GDI++++ ++ +++ P D+ K Sbjct: 121 HAPVPHFASNRSFALKVQGDSMSTEFSEGDIIVVDPEMEPKNNHYVVVFLPMENDVTFKQ 180 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L GR L +N YP + M + I ++ Sbjct: 181 LAVDGGRRY-LKPVNPRYP--IMPMEEAAKICGVV 212 >gi|183982006|ref|YP_001850297.1| repressor LexA [Mycobacterium marinum M] gi|229621223|sp|B2HLX8|LEXA_MYCMM RecName: Full=LexA repressor gi|183175332|gb|ACC40442.1| repressor LexA [Mycobacterium marinum M] Length = 244 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 27/226 (11%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPS 54 T+ + ++ I I PS + GL TS ++ + +G R P+ Sbjct: 32 TALTERQRTILNVIRTSVNDRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPN 91 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + D + T +P F P + Sbjct: 92 RPRAVDV--------RGADDTVTAAPVTDVAGSDALPEPTFVPVLGRIAAGGPILAEEAV 143 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P Q K SM GD +++ + GD + Sbjct: 144 EDVFPLPRELVG-------QGTLFLLKVVGESMIEAAICDGDWVVVRQQNVADNGDIVAA 196 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K G I LM N + +D + +++ Sbjct: 197 MID-GEATVKTFKR-AGGQIWLMPHNPAFDPI--PGNDATVLGKVV 238 >gi|229086261|ref|ZP_04218446.1| LexA repressor [Bacillus cereus Rock3-44] gi|228697053|gb|EEL49853.1| LexA repressor [Bacillus cereus Rock3-44] Length = 215 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 54/225 (24%), Gaps = 32/225 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + + I + I + PS + + GL ++ + Sbjct: 10 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSR----------- 58 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + K E E + P + + Sbjct: 59 ------LEEKGYIRRDPTKPRAIEILGEVKIETETQSVIQVPIVGKVTAGLPITAVESVE 112 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 +P A Q + SM GD++++ G+ ++ Sbjct: 113 EHFPLPASVV------AGADQVFMLRISGDSMIEAGILDGDLVVVRQQHSAYNGEIVVAL 166 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 167 TEDNEATVKRFYKEKD-HFRLQPENSSLEPIILDK--VSVIGKVI 208 >gi|254504047|ref|ZP_05116198.1| LexA repressor [Labrenzia alexandrii DFL-11] gi|222440118|gb|EEE46797.1| LexA repressor [Labrenzia alexandrii DFL-11] Length = 227 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 14/221 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESIFK--------- 60 I + + PS K LD S + R R + + Sbjct: 2 FIHERLKETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNRARAMEVVRLPD 61 Query: 61 -ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 I + P + K P + S G G + Sbjct: 62 SIAPGLGAPRPRGSFSPEVIEGSLGKPAPAPAPAPEPVAASTEIPVMGRIAAGVPIEAIQ 121 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + + SM GD +++ + GD ++ Sbjct: 122 THSHSISVPPELLGKGEHYALEVRGDSMIEAGILDGDTVLIRRTESADSGDIVVALVDDE 181 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L ++G SI L + N Y + +++ Sbjct: 182 EATLKRL-RKKGPSIALEAANPAYETRIFGPGRVRVQGKLV 221 >gi|224476467|ref|YP_002634073.1| LexA repressor [Staphylococcus carnosus subsp. carnosus TM300] gi|254809107|sp|B9DP69|LEXA_STACT RecName: Full=LexA repressor gi|222421074|emb|CAL27888.1| DNA damage-inducible repressor LexA (DinR) [Staphylococcus carnosus subsp. carnosus TM300] Length = 207 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 59/226 (26%), Gaps = 32/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 MT + +I+E I + PS + GL ++ + R +G R Sbjct: 1 MTELTKRQSEIYEYIKTVVHTKGYPPSVREIGEAVGLASSSTVHGHLSRLESKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ ++ E+ P + N Sbjct: 61 TK-----------------PRAIEIVSDQLEENAEMEGTIHVPVIGKVTAGVPITAVENI 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + + + +++ Sbjct: 159 MTEDDEATVKRFYKEK-HRYRLQPENSTMDPIYL--EQVTVLGKVV 201 >gi|71276700|ref|ZP_00652969.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Dixon] gi|71162492|gb|EAO12225.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Dixon] Length = 224 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 18/214 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + E N+ S A+K G+ ++ + +R G++ +T + I A Sbjct: 2 ETIGSRVRKEREAQNINRSDFAKKTGIGYSTIAELERGGMQ------TTTKLRLIADALG 55 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ L K I G + P++ Sbjct: 56 VSLRWLETGKGEKI-EATTATKSIATEKISQHYIRVEHLDAEAGMGESRVNLDYPDVIRS 114 Query: 127 HN----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 G + + SM+P+ + G+++++++ IQ GD + + Sbjct: 115 VEYTEAFIRSLIGFVPQKGRLKLITGCGDSMIPVIQPGEVVLVDTGIQSFDGDGIYLINI 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K L RG ++ ++S N Y Sbjct: 175 GHGQQIKALQ-DRGDAVYVVSANPLYQPIPFPSE 207 >gi|319408560|emb|CBI82213.1| SOS response regulator lexA protein [Bartonella schoenbuchensis R1] Length = 237 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 63/232 (27%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGL---DPTSFNKS-----KRFGIEGRN-R 51 M + ++ I + + PS + L +S ++ +R I R Sbjct: 1 MLTCKQYELLLFIHNHMKETGVPPSFDEMRNALELASKSSIHRLITALEERGFIRRLPNR 60 Query: 52 WPSTESIF---KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + E I KI + + + + T + + + G Sbjct: 61 ARAVEVIRLPDKITFDLSSARKIFPSMVEKNKKKTFQDLDNLDHSDTKNKQNITIPIMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G + + + + + SM D +I+ Sbjct: 121 IAAGVPISAIQQQTNTLSLPPDMIGLGEYYALEVKGDSMVEAGIIDRDTIIVKRQNTATQ 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + K + SI L + N Y + + R++ Sbjct: 181 GEIIVALIDKQEATLKRYRRKGA-SIALEAANPHYETRIYKPERVHIQGRLV 231 >gi|237707939|ref|ZP_04538420.1| lambda repressor [Bacteroides sp. 9_1_42FAA] gi|229458045|gb|EEO63766.1| lambda repressor [Bacteroides sp. 9_1_42FAA] Length = 225 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 65/224 (29%), Gaps = 9/224 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKI 61 +H + + + + L+ +A K G+ + + I K+ Sbjct: 1 MRTHVALKQFMKKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLTKILKV 60 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTGNKWNTVG 119 + + + + G F F G+ V Sbjct: 61 SVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKGDAERWVS 120 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + S ++ T P + G +++++ V GD + + + Sbjct: 121 TTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDE 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K LI G+ L LN YP+ + +++ ASQ Sbjct: 178 FTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 218 >gi|254992884|ref|ZP_05275074.1| LexA repressor [Listeria monocytogenes FSL J2-064] Length = 204 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 + I+E I + PS + GL +S +EG+ R P+ + Sbjct: 7 QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E E P + P + N + Sbjct: 67 IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIDEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + + SM+ GD +I+ G+ ++ + Sbjct: 107 PEYMATGET------NVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPILLNN--VTILGKVI 197 >gi|120403431|ref|YP_953260.1| LexA repressor [Mycobacterium vanbaalenii PYR-1] gi|171769146|sp|A1T7V4|LEXA_MYCVP RecName: Full=LexA repressor gi|119956249|gb|ABM13254.1| SOS-response transcriptional repressor, LexA [Mycobacterium vanbaalenii PYR-1] Length = 232 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 56/219 (25%), Gaps = 23/219 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 + I + I PS + GL TS ++ + +G R Sbjct: 26 QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLR-------RDP 78 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + D T +P F P + + +P Sbjct: 79 NRPRAVDVRGSDDHAAPIVATDVAGSDSLPEPTFVPVLGRIAAGGPILAEEAVEDVFPLP 138 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM+ GD +++ + GD + G+ Sbjct: 139 RELVG-------EGSLFLLKVVGESMIDAAICDGDWVVVRQQSVADNGDIVAAMID-GEA 190 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + LM N + +D + +++ Sbjct: 191 TVKTFKR-TKGQVWLMPHNPAFDPI--PGNDAAILGKVV 226 >gi|229012871|ref|ZP_04170038.1| LexA repressor [Bacillus mycoides DSM 2048] gi|229134492|ref|ZP_04263305.1| LexA repressor [Bacillus cereus BDRD-ST196] gi|229168407|ref|ZP_04296131.1| LexA repressor [Bacillus cereus AH621] gi|228615051|gb|EEK72152.1| LexA repressor [Bacillus cereus AH621] gi|228649113|gb|EEL05135.1| LexA repressor [Bacillus cereus BDRD-ST196] gi|228748415|gb|EEL98273.1| LexA repressor [Bacillus mycoides DSM 2048] Length = 213 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 60/226 (26%), Gaps = 36/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 10 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 69 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + + + P + + Sbjct: 70 TK--PRAIEILGDNRTETQSVIQ------------------VPIIGKVTAGLPITAVESV 109 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P A Q + SM GD++++ G+ ++ Sbjct: 110 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 163 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 164 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 206 >gi|226308884|ref|YP_002768844.1| LexA repressor [Rhodococcus erythropolis PR4] gi|226188001|dbj|BAH36105.1| LexA repressor [Rhodococcus erythropolis PR4] Length = 229 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 32/222 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNK-SKRFGIEGRNRWPSTESI 58 ++I I + + TPS + GL ++ +K K +G R ++ Sbjct: 29 PLRQQQILMTIRDLVAANGCTPSTRQIGDAVGLRSTSTVSKHLKSLEEKGFLR--RGAAM 86 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L KE+ P + + + + Sbjct: 87 ARQLDVRPF--------------LVGAKEQSSSNTVTVPVVGDIAAGAPILAEEHADEVL 132 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + SM+ GD++++ + + G+ + Sbjct: 133 ALPRELVGS-------GTVFGLRVRGESMVDAAICDGDVVVVRRQDEAHSGEIVAAMID- 184 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ KVL R + L N Y ++ + +++ Sbjct: 185 GEATVKVLRRR-DGHVYLEPRNPAYS--VIDGDRAAILGKVV 223 >gi|167636646|ref|ZP_02394937.1| LexA repressor [Bacillus anthracis str. A0442] gi|167527933|gb|EDR90746.1| LexA repressor [Bacillus anthracis str. A0442] Length = 206 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 1 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E K +P+ + Sbjct: 61 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 102 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 103 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 156 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +I+ Sbjct: 157 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKII 199 >gi|317485530|ref|ZP_07944407.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6] gi|316923210|gb|EFV44419.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6] Length = 238 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 67/226 (29%), Gaps = 21/226 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I A++ ++ + L+R G+ G ++ S Sbjct: 29 MARLRDISDQRQIAAFAQKCGVSQANLSRALGVKAQQL---------GLDKVSKILSAMG 79 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L + + + TE + +G + F T Sbjct: 80 ALVIFPDEERYPVMRRMACHSPTENVTGDNLHEIPVFEEAGAGLPAEFFST--------A 131 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGD 179 PE P Y + K SM P KG + + ++ G L++ Sbjct: 132 PENMIPVLPQYNLP-DVRAVKVTGDSMEPTILKGAYVGVIPLDDELEDGGIYLVQRPPFG 190 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223 +V K ++ +I L S N + V D I +++W Q Sbjct: 191 LVVKRVMQDEDGNIILHSDNPRWKPQKVSNEGYDNIIIGKVVWTWQ 236 >gi|268610570|ref|ZP_06144297.1| hypothetical protein RflaF_13882 [Ruminococcus flavefaciens FD-1] Length = 193 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 49/183 (26%), Gaps = 6/183 (3%) Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 FN K +G PS I + + + + EK L P Sbjct: 10 FNYIKSRLSDG--ISPSVREIMEAMGFRSTSTAHRYIEALVHEGLIEKTGNLNRTLRLPN 67 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 G+ G G V + K + SM+ GDI Sbjct: 68 CGTASVPIMGTVTAGQPITAVENITGYVGFEAQGIDPEELFALKIRGESMINAGILDGDI 127 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +I+ GD ++ D K L N + ++E + Sbjct: 128 VIVERTQYAENGDIVVAFIDHEDATVKTFYKEE-GHFRLQPENDTMDPIIL--DEVEVLG 184 Query: 217 RIL 219 +++ Sbjct: 185 KVI 187 >gi|218529602|ref|YP_002420418.1| phage repressor [Methylobacterium chloromethanicum CM4] gi|218521905|gb|ACK82490.1| putative phage repressor [Methylobacterium chloromethanicum CM4] Length = 244 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 73/241 (30%), Gaps = 36/241 (14%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKI------ 61 + I + LT +A + + + + R+R P+ + ++ Sbjct: 5 LGPVIREARKARGLTQGDIASALKISRPAVGQWESGDTGPDRDRLPALARLLRVDLGALT 64 Query: 62 ---LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------- 109 L ++ + + + T + S G + V+ Sbjct: 65 NGELVLLDQEAAEGVSDSEALPAPTANVVEHQDQAAVDVSAFKGPRNVPVYGTGSGGDGG 124 Query: 110 ---PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 G + P A + S+ P Y G + ++ + Sbjct: 125 DFSFNGQLIDHAPRPPGI-------ANRKDVYVVYLVGDSISPAYEDGTPIYVDPHRRPQ 177 Query: 167 CGDRLLIKPR------TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL- 219 D ++++ R G K L++R + L N +D ++ +++ + R++ Sbjct: 178 PRDYVVVELRGERDGEPGPAFVKRLVARGAGKLRLEQHNPSGQLDPIDETEVVRVHRVIP 237 Query: 220 W 220 W Sbjct: 238 W 238 >gi|133873978|gb|ABO40673.1| prophage repressor [Enterobacteria phage mEp332] Length = 237 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 66 --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + V + S ++ T P + G +++++ V GD Sbjct: 124 KSDAEKWVSTTKKASGSAFWLEVEGNSMTAPT---GYKPSFPDGMLILVDPEQTVEPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|23004335|ref|ZP_00047719.1| COG1974: SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 4/178 (2%) Query: 43 RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 R R P + + A +++ S K + + S Sbjct: 29 RARAIEILRMPDAPAAKPVAAEPRRFTPSVVEGGLSGKPPAPKPP--MLQAHDGNGHSVM 86 Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNS 161 G G + + + + + + + SM GD+++++ Sbjct: 87 VPVMGRIAAGTPISAIESQSHTIAMSPDFLSGGEHYALEVRGDSMVEAGILDGDLVVIHK 146 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K L R G SI L + N Y + + +++ Sbjct: 147 QDTANNGDIIVALIDDEEATLKRLRRR-GSSIALEADNPAYETRVLGPDRVRIQGKLV 203 >gi|227495180|ref|ZP_03925496.1| repressor LexA [Actinomyces coleocanis DSM 15436] gi|226831632|gb|EEH64015.1| repressor LexA [Actinomyces coleocanis DSM 15436] Length = 239 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 8/215 (3%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-T 65 I E + + PS +A GL +S K +E + T I + L Sbjct: 23 ILEILQTSIGQKGFAPSVREIAEAVGLSSSSTIKHHLDILEEKGYIRRTRGISRALEIIN 82 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + IP+ + G G E Sbjct: 83 PVSENDSSSETPGATNPLKTDSYFIPVSQISDGHNTDAPLVGRIAAGTPITAEQSIEDVF 142 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + Q + SM+ GD +++ G+ + G+ KV Sbjct: 143 TLPQRFTGKGQLFVLEVFGDSMIDAAICDGDYVVIRQQESAEEGEIVAAMLD-GEATVKV 201 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L + G + L+ N Y ++ + + +++ Sbjct: 202 LSKKGGN-VWLLPRNENYLPI--PGNEAQILGKVV 233 >gi|212639337|ref|YP_002315857.1| SOS-response transcriptional repressor (RecA-mediated autopeptidase) [Anoxybacillus flavithermus WK1] gi|212560817|gb|ACJ33872.1| SOS-response transcriptional repressor (RecA-mediated autopeptidase) [Anoxybacillus flavithermus WK1] Length = 213 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPSTESIFK 60 ++I + I + PS + GL ++ + R +G R P+ + Sbjct: 16 QQQILDFIKQEVRTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGFIRRDPTKPRAIE 75 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + P + N + Sbjct: 76 ILDE--------------------HESIPRTNVINVPIVGKVTAGQPITAIENIEEYFPL 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + Q + SM GD +I+ N GD ++ + Sbjct: 116 PERFVSPDD------QVFMLQIVGESMIEAGILDGDYVIVRQQQTANNGDIVVAMTEDHE 169 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V+ + + +++ Sbjct: 170 ATVKRFFKEKD-HIRLQPENSSMEPIIVQNA--TILGKVI 206 >gi|134098342|ref|YP_001104003.1| SOS-response transcriptional repressor, LexA [Saccharopolyspora erythraea NRRL 2338] gi|133910965|emb|CAM01078.1| SOS-response transcriptional repressor, LexA [Saccharopolyspora erythraea NRRL 2338] Length = 240 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 57/215 (26%), Gaps = 25/215 (11%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+ +AI H PS + GL TS + +E + + + Sbjct: 42 KVLDAIRDWMRDHGYPPSVREIGDAVGLTSTSSVAYQLRVLERKGYLRRDPHRPRTVGVL 101 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 Q + + T + P + + + +P+ Sbjct: 102 VAGGEQNGGDLGAQTKPT-----------YVPVVGRIAAGGPILAEESIEDVFPLPKEIV 150 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + SM+ GD + + GD ++ G+ K Sbjct: 151 G-------EGSLFLLQVVGDSMIDLAITDGDWVAVRQQPDAENGD-VVAAMIEGEATVKT 202 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L+ N Y D + +++ Sbjct: 203 FKR-TEDHVWLVPHNQAYEPIL--GDDATILGKVV 234 >gi|257460926|ref|ZP_05626027.1| putative transcriptional regulator [Campylobacter gracilis RM3268] gi|257442257|gb|EEV17399.1| putative transcriptional regulator [Campylobacter gracilis RM3268] Length = 233 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 68/231 (29%), Gaps = 22/231 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + E LT LA +G+ S + +E + S I K+L + Sbjct: 2 NLGLRIKNLREERGLTQLELANLSGISRASIQLYEADKVEIPVKKLS--DISKVLDVDID 59 Query: 68 TICQL------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW------ 115 + S+ + + F G Sbjct: 60 FFTKDKSSLVLRKSFVSNKNSVVSPANLKKSQKEQIAEDQIFIRKLSSAVGAGESVDIEG 119 Query: 116 -NTVGVPEIRSPHNGIYAIQ---TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + ++ + K SM+P+ D ++ GD L Sbjct: 120 VEVYDTDVLVPFSRMLFNLPVNEHNIRCLKVVGYSMIPMLYP-DSWVIARMGPSFDGDGL 178 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 I G+ + K+L ++ + S+N Y + +D ++ + ++L Sbjct: 179 YIIDFGGNFMVKLLQKHPNGTLFVNSVNQEYRSYEIGPNDEVRVQIVGKVL 229 >gi|291006956|ref|ZP_06564929.1| SOS-response transcriptional repressor, LexA [Saccharopolyspora erythraea NRRL 2338] Length = 241 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 57/215 (26%), Gaps = 25/215 (11%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+ +AI H PS + GL TS + +E + + + Sbjct: 43 KVLDAIRDWMRDHGYPPSVREIGDAVGLTSTSSVAYQLRVLERKGYLRRDPHRPRTVGVL 102 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 Q + + T + P + + + +P+ Sbjct: 103 VAGGEQNGGDLGAQTKPT-----------YVPVVGRIAAGGPILAEESIEDVFPLPKEIV 151 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + SM+ GD + + GD ++ G+ K Sbjct: 152 G-------EGSLFLLQVVGDSMIDLAITDGDWVAVRQQPDAENGD-VVAAMIEGEATVKT 203 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L+ N Y D + +++ Sbjct: 204 FKR-TEDHVWLVPHNQAYEPIL--GDDATILGKVV 235 >gi|310777871|ref|YP_003966204.1| putative phage repressor [Ilyobacter polytropus DSM 2926] gi|309747194|gb|ADO81856.1| putative phage repressor [Ilyobacter polytropus DSM 2926] Length = 219 Score = 92.1 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 11/213 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I +R ++ LA K + P + + R P+ IL Sbjct: 5 ERIKIYMKRSSVKGKELAVKCQISPQYLSDIRSG-----RRTPTFHIFNLILDNLKLLED 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-NG 129 + +L + +K + G PE SP Sbjct: 60 ERNELLELWKESKDKNYSRSNVKNVI-GEIIKLPIVGTASASPGKLNFENPEKHSPVITY 118 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVLIS 187 ++ K + SM P + G +I+++ +++++ + KVL Sbjct: 119 EGMSYSKCFIMKVEGDSMEPRIKDGSEIIVDTNKNTLEENLNKIVVFNLNDEAYVKVL-K 177 Query: 188 RRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + L S+N YP + D + R++ Sbjct: 178 LNKNKLVLQSINDKYPNIAIKSTDDFNIVGRVV 210 >gi|163941295|ref|YP_001646179.1| LexA repressor [Bacillus weihenstephanensis KBAB4] gi|229621198|sp|A9VPX5|LEXA_BACWK RecName: Full=LexA repressor gi|163863492|gb|ABY44551.1| transcriptional repressor, LexA family [Bacillus weihenstephanensis KBAB4] Length = 204 Score = 92.1 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 60/226 (26%), Gaps = 36/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 1 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + + + + P + + Sbjct: 61 TK--PRAIEILGDNRTETQSVIQ------------------VPIIGKVTAGLPITAVESV 100 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P A Q + SM GD++++ G+ ++ Sbjct: 101 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 154 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 155 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 197 >gi|296393371|ref|YP_003658255.1| LexA family transcriptional repressor [Segniliparus rotundus DSM 44985] gi|296180518|gb|ADG97424.1| transcriptional repressor, LexA family [Segniliparus rotundus DSM 44985] Length = 289 Score = 92.1 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 62/219 (28%), Gaps = 21/219 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 ++I + I PS + AGL TS ++ + +G R + + Sbjct: 77 QQEILDIIRSSIRERGFPPSIREIGEAAGLASTSSVAHQLRSLQQKGYLR--REANRPRA 134 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P S+ ++ + + + + V + + +P Sbjct: 135 VDTRAISAPSGELTPESEEPQSQPQPTAVLVPLL----GRIAAGAPVLAEEHVEDLFPLP 190 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + SM+ GD +++ ++ + Sbjct: 191 RELVGTDAA-------FLLSVTGDSMVDAGVHDGDWVVVRPTKTPVYDGEIVAALFDDEA 243 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L GR + L N Y + + +++ Sbjct: 244 TVKTLRRH-GREVWLYPENKAYQP--FRGEKAKILGKVI 279 >gi|282851280|ref|ZP_06260645.1| putative repressor LexA [Lactobacillus gasseri 224-1] gi|282557248|gb|EFB62845.1| putative repressor LexA [Lactobacillus gasseri 224-1] Length = 202 Score = 92.1 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 23/208 (11%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S ++I + ++++ E +++ S LAR+ G+ + ++ R Sbjct: 1 MRSSEEIIDYLNQLREEQDVSISELARRVGMAKSGVSRYFNHT-----REFPINRAPAFA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + LL L + P + + N + Sbjct: 56 KALHIKTEDLLGL----------EPINQNKPRMVPLLGTIAMGAPITAEQNIEKYIP--- 102 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 YA + Q SM PL G I I+ V G+ + G+ Sbjct: 103 --EYMMDRYA-DDTLFALRCQGDSMYPLIPNGAIAIIRQQADVEDGE-VAAVLINGEATL 158 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K ++ G+++ L N Y ++ Sbjct: 159 KKVLHV-GKTVVLRPANPDYKDIILDKD 185 >gi|251796630|ref|YP_003011361.1| SOS-response transcriptional repressor, LexA [Paenibacillus sp. JDR-2] gi|247544256|gb|ACT01275.1| SOS-response transcriptional repressor, LexA [Paenibacillus sp. JDR-2] Length = 206 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 58/227 (25%), Gaps = 36/227 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53 M+ S+++ I E I PS + GL +S +E + R P Sbjct: 1 MSKISNRQQSILEFIKNEVRDKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL L + G G Sbjct: 61 TKPRAIEILDQDGVDGIILPAVAQ-------------------------VPIVGKVTAGV 95 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 E P + + + SM GD +I+ N GD ++ Sbjct: 96 PITATENIEEYFPLSAHFVGDDEVFILNVMGDSMIEAGIHNGDYVIVRQQQTANNGDIVV 155 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N + + + +++ Sbjct: 156 AMTEDDEATVKTFYKEKD-HIRLQPENSTMEPIRLNN--VTILGKVV 199 >gi|320086867|emb|CBY96639.1| LexA repressor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 234 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 18/214 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ LT LA G + R PS E I I+ L Sbjct: 24 KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 78 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130 D + P + F GN V + EI Sbjct: 79 SDGMVDYPDSNLNNVSSPRPHTE---IRRFPLISWVSAGNWCEAVEPYQLREIEVWPETT 135 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 + + SM +G ++++ I+ G ++ + K Sbjct: 136 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPDIEPTNGKLVVAKLESENEATFKKY 195 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G+ L LN Y + + + I ++ Sbjct: 196 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 227 >gi|293366695|ref|ZP_06613371.1| LexA repressor [Staphylococcus epidermidis M23864:W2(grey)] gi|291318996|gb|EFE59366.1| LexA repressor [Staphylococcus epidermidis M23864:W2(grey)] Length = 265 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 31/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + +I++ I ++ + PS + GL ++ + Sbjct: 60 MRELTKRQSEIYDYIKKIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 108 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + + + E + P + N Sbjct: 109 ------LEEKGYIRRDPTKPRAIEIVSEQLDEVNVEETIHVPVIGKVTAGVPITAVENIE 162 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 +PE + + + SM GD +I+ S GD ++ Sbjct: 163 EYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 217 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + +++ Sbjct: 218 TEDEEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VIVVGKVI 259 >gi|87159694|dbj|BAE79430.1| temperature-sensitive lambda-repressor [Cloning vector pPL450] gi|87159697|dbj|BAE79432.1| temperature-sensitive lambda-repressor [Cloning vector pPL451] gi|87159700|dbj|BAE79434.1| temperature-sensitive lambda-repressor [Cloning vector pPL452] gi|87159703|dbj|BAE79436.1| temperature-sensitive lambda-repressor [Cloning vector pCL476] gi|87159706|dbj|BAE79438.1| temperature-sensitive lambda-repressor [Cloning vector pCL478] gi|87159709|dbj|BAE79440.1| temperature-sensitive lambda-repressor [Cloning vector pND706] gi|87159712|dbj|BAE79442.1| temperature-sensitive lambda-repressor [Cloning vector pND707] Length = 237 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ F Sbjct: 66 --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ T P + G +++++ V GD Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|15799951|ref|NP_285963.1| putative cI repressor protein for prophage CP-933H [Escherichia coli O157:H7 EDL933] gi|15829528|ref|NP_308301.1| hypothetical protein ECs0274 [Escherichia coli O157:H7 str. Sakai] gi|168750234|ref|ZP_02775256.1| prophage repressor [Escherichia coli O157:H7 str. EC4113] gi|168757277|ref|ZP_02782284.1| prophage repressor [Escherichia coli O157:H7 str. EC4401] gi|168763488|ref|ZP_02788495.1| prophage repressor [Escherichia coli O157:H7 str. EC4501] gi|168771975|ref|ZP_02796982.1| prophage repressor [Escherichia coli O157:H7 str. EC4486] gi|168776110|ref|ZP_02801117.1| prophage repressor [Escherichia coli O157:H7 str. EC4196] gi|168783011|ref|ZP_02808018.1| prophage repressor [Escherichia coli O157:H7 str. EC4076] gi|195938652|ref|ZP_03084034.1| hypothetical protein EscherichcoliO157_19857 [Escherichia coli O157:H7 str. EC4024] gi|208808008|ref|ZP_03250345.1| prophage repressor [Escherichia coli O157:H7 str. EC4206] gi|208812242|ref|ZP_03253571.1| prophage repressor [Escherichia coli O157:H7 str. EC4045] gi|208819276|ref|ZP_03259596.1| prophage repressor [Escherichia coli O157:H7 str. EC4042] gi|209396038|ref|YP_002268874.1| prophage repressor [Escherichia coli O157:H7 str. EC4115] gi|217326454|ref|ZP_03442538.1| prophage repressor [Escherichia coli O157:H7 str. TW14588] gi|254791408|ref|YP_003076245.1| putative cI repressor protein for prophage CP-933H [Escherichia coli O157:H7 str. TW14359] gi|331682213|ref|ZP_08382835.1| repressor protein CI [Escherichia coli H299] gi|12513020|gb|AAG54571.1|AE005202_9 putative cI repressor protein for prophage CP-933H [Escherichia coli O157:H7 str. EDL933] gi|13359731|dbj|BAB33697.1| repressor protein CI [Escherichia coli O157:H7 str. Sakai] gi|187768417|gb|EDU32261.1| prophage repressor [Escherichia coli O157:H7 str. EC4196] gi|188015589|gb|EDU53711.1| prophage repressor [Escherichia coli O157:H7 str. EC4113] gi|188999620|gb|EDU68606.1| prophage repressor [Escherichia coli O157:H7 str. EC4076] gi|189355754|gb|EDU74173.1| prophage repressor [Escherichia coli O157:H7 str. EC4401] gi|189359431|gb|EDU77850.1| prophage repressor [Escherichia coli O157:H7 str. EC4486] gi|189366359|gb|EDU84775.1| prophage repressor [Escherichia coli O157:H7 str. EC4501] gi|208727809|gb|EDZ77410.1| prophage repressor [Escherichia coli O157:H7 str. EC4206] gi|208733519|gb|EDZ82206.1| prophage repressor [Escherichia coli O157:H7 str. EC4045] gi|208739399|gb|EDZ87081.1| prophage repressor [Escherichia coli O157:H7 str. EC4042] gi|209157438|gb|ACI34871.1| prophage repressor [Escherichia coli O157:H7 str. EC4115] gi|217322675|gb|EEC31099.1| prophage repressor [Escherichia coli O157:H7 str. TW14588] gi|254590808|gb|ACT70169.1| putative cI repressor protein for prophage CP-933H [Escherichia coli O157:H7 str. TW14359] gi|326338747|gb|EGD62566.1| Phage repressor [Escherichia coli O157:H7 str. 1044] gi|326342468|gb|EGD66248.1| Phage repressor [Escherichia coli O157:H7 str. 1125] gi|331080637|gb|EGI51813.1| repressor protein CI [Escherichia coli H299] Length = 237 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 66 --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ T P + G +++++ V GD Sbjct: 124 KGDAEKWVSTTKKASGSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|220931986|ref|YP_002508894.1| SOS-response transcriptional repressor, LexA [Halothermothrix orenii H 168] gi|219993296|gb|ACL69899.1| SOS-response transcriptional repressor, LexA [Halothermothrix orenii H 168] Length = 207 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 59/225 (26%), Gaps = 30/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + K I I + PS + + GL + S Sbjct: 1 MEELTERQKDILRFIQEEIKEKGYPPSVREIGKAVGLKSPA----------------SVH 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 S K L N + ++ + +L+ P G N + Sbjct: 45 SHLKSLEKFNYIRRDPSKPRAIEVLYGDEDKINKEMLHIPIVGQVTAGQPI-LAQENIED 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 VP + + K + SM+ GD +I GD ++ Sbjct: 104 YFPVPTDYVRTSD-----KELFMLKIKGNSMINAGIYDGDYVIAQKQDNAENGDIIIALI 158 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + K R I L N V + + + +I+ Sbjct: 159 D-NEATVKRYYKERD-HIRLQPENPDMDPIYVNFNTYFKVLGKII 201 >gi|310778853|ref|YP_003967186.1| putative phage repressor [Ilyobacter polytropus DSM 2926] gi|309748176|gb|ADO82838.1| putative phage repressor [Ilyobacter polytropus DSM 2926] Length = 226 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 12/217 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+ I + E + + LA KAGL T ++ + G+ + + ++ A Sbjct: 11 RNKLALYIKQNREARGIGLNQLALKAGLQKTILSRLE----SGKILKINPFFLKQLAKAL 66 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +L + + E K G G+ + + I + Sbjct: 67 GKDYKELYRIVGYLEKEGEIKSNGR----IVDLSICELPVYGKAAAGDGYINLDNI-IYT 121 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + SM P +GD +++ ++ + + + K + Sbjct: 122 KRVIANGFSKNSFLVEVAGDSMTPEINEGDFALVDPMENDYISGKVYVVTYGDETLIKKI 181 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 + L S N YP + IE R+L Sbjct: 182 ECPAENIVVLKSYNAKYPDKYIMDEQIEGLKIEGRVL 218 >gi|145635989|ref|ZP_01791671.1| hypothetical protein CGSHiAA_00695 [Haemophilus influenzae PittAA] gi|145266755|gb|EDK06777.1| hypothetical protein CGSHiAA_00695 [Haemophilus influenzae PittAA] Length = 301 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 67/209 (32%), Gaps = 15/209 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI----LAA 64 + + + + + ++ LA + ++ + + + ++ ++ Sbjct: 87 LLDNVKFLMRKKGISLPLLAERTEIEKSRLLELLNSDNVENEK-LFLNTLEQLFLVSADC 145 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + +P+ + G+ G + +P G + P Sbjct: 146 LLYDDLSQNPKGVNFLKMRSIPVNHVPIRGYAQLGTEGHWIDLEYPVGEGDGYIWWPSR- 204 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 K Q SM P + G+ +I+ ++ GD +L+ ++ K+ Sbjct: 205 ---------DEDVYALKCQGDSMTPRIKHGEYVIIEPNHEIKNGDEVLVVTDEDQVMVKI 255 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 +G + L S+N + + +I Sbjct: 256 YAYEQGGRLTLYSVNENHEPINLYQENIR 284 Score = 36.7 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 7/79 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESI 58 M H + ID + S LA K G+ + + K G+ + + Sbjct: 4 MKEIRHDNLLLLID----EAG-STSELASKTGIAVSYLLQIKNKNAIQNGKPKGIGDKIA 58 Query: 59 FKILAATNETICQLLDLPF 77 K+ + L Sbjct: 59 AKLEDGMGKPRGWLDQQHQ 77 >gi|19343388|ref|NP_597898.1| regulatory protein cI [Enterobacteria phage HK022] Length = 262 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + ++ L + LA + + P + +K R ES+ +L T Sbjct: 39 QRLALACDKAGLPLHGRQADLAVRLKVTPKAISKWFNGESI--PRKDKMESLASVLGTTA 96 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + D + + S G K + ++ Sbjct: 97 AYLHGYADDDGITVNHLSRSNDYYRVDVLDVQASAGPGTMVSNEFIEKIRAIEYTTEQAR 156 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 Q + SM GD + ++ +I GD + + + K L Sbjct: 157 ILFNGRPQESVKVITVRGDSMEGTINPGDEIFVDVSITCFDGDGIYVFVYGKTMHVKRLQ 216 Query: 187 SRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 ++ + ++S N Y + E + +A++L Sbjct: 217 MQKN-RLAVISDNAAYDRWYIEEGEEEQLHILAKVL 251 >gi|1350835|sp|P18680|RPC1_BPHK0 RecName: Full=26 kDa repressor protein; AltName: Full=Regulatory protein CI gi|435310|emb|CAA34222.1| unnamed protein product [Enterobacteria phage HK022] Length = 235 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 10/216 (4%) Query: 11 EAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + ++ L + LA + + P + +K R ES+ +L T Sbjct: 12 QRLALACDKAGLPLHGRQADLAVRLKVTPKAISKWFNGESI--PRKDKMESLASVLGTTA 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + D + + S G K + ++ Sbjct: 70 AYLHGYADDDGITVNHLSRSNDYYRVDVLDVQASAGPGTMVSNEFIEKIRAIEYTTEQAR 129 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 Q + SM GD + ++ +I GD + + + K L Sbjct: 130 ILFNGRPQESVKVITVRGDSMEGTINPGDEIFVDVSITCFDGDGIYVFVYGKTMHVKRLQ 189 Query: 187 SRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 ++ + ++S N Y + E + +A++L Sbjct: 190 MQKN-RLAVISDNAAYDRWYIEEGEEEQLHILAKVL 224 >gi|17426234|ref|NP_510900.1| similar to phage phi PVL repressor [Staphylococcus phage phiETA] gi|8918421|dbj|BAA97592.1| unnamed protein product [Staphylococcus phage phiETA] Length = 238 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 31/236 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K+L + Sbjct: 6 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKVLNVNEAWLM 63 Query: 71 ----------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT--------- 111 + D+ + T ++ + + Sbjct: 64 GFDISKNRKIENNDITSIYNKLTPPRQNNVLNYANSQLDEQNSKGDNIVDINSYKQDKTP 123 Query: 112 -------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 E + D K SM P+++ G+I+ + Sbjct: 124 VNVNGCVSAGVGERLHDETLFTEMVKAPVPPHDLALKVNGDSMEPMFKDGEIIFVEKTHN 183 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G + + K + + L+SLN Y + + +++ Sbjct: 184 IKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKKYRDLHFYRNESVRLVGKVI 237 >gi|188997121|ref|YP_001931372.1| transcriptional repressor, LexA family [Sulfurihydrogenibium sp. YO3AOP1] gi|188932188|gb|ACD66818.1| transcriptional repressor, LexA family [Sulfurihydrogenibium sp. YO3AOP1] Length = 210 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 35/220 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDP-TSFNKSKRFGIEGRNRWPSTES 57 MT K+I + I +++ P+ +A+ L ++ + E Sbjct: 1 MTKR-QKEILDFIIEYYQKNGYYPTLMEIAKHFNLSAVSTIH----------------EH 43 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + K+ + + + P +G ++ F Sbjct: 44 LQKLEQEGYIKRSGKGKIEIVEKSPKNENSFIFPYYGTISAGKPIAIENQTF------EY 97 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + + +I + + SM+ DI+I+ + + G+ ++ Sbjct: 98 IDLSDILR--------CENCYALRVKGNSMIGEFILNDDIIIVENRKEALNGEIVVAVID 149 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + K + I L+ N Y E +E Sbjct: 150 GEETTLKKFYNLGNGYIKLVPANPDYEPMIYEADRVEIQG 189 >gi|322384025|ref|ZP_08057752.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151372|gb|EFX44562.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 210 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 25/222 (11%) Query: 1 MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M ++I+ I+++ + +LT S LA+ G+ ++ + ++ ++P I Sbjct: 1 MDDKKIQEIFASNINKLRKSKSLTQSDLAKILGVGVSTVSDWEKA-----KKYPRAGVIE 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K+ ++ S E + +P++ GN Sbjct: 56 KLSQHFGIPKSNFFEVQGSATDLYEDELVRLPIVGKVSC-------------GNGVMAYE 102 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + + + SM+ GD+L++ V G+ + Sbjct: 103 EIEAYEETPSSWVRGGEFFYVRAKGDSMINARIFDGDLLLIRKQNDVEEGEIAAVLID-D 161 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIAR 217 ++ K + R + L S N Y +I+ + + Sbjct: 162 EVYLKRVHKR-DDCLLLESENPTYKPIYRTKENYCEIKILGK 202 >gi|154509060|ref|ZP_02044702.1| hypothetical protein ACTODO_01577 [Actinomyces odontolyticus ATCC 17982] gi|153798694|gb|EDN81114.1| hypothetical protein ACTODO_01577 [Actinomyces odontolyticus ATCC 17982] Length = 226 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 1 MTSFS----HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 MT S H+ I I+ PS +A GL S K +E Sbjct: 1 MTERSISDRHRAILRVINEKLASSGFPPSVREIASAVGLASPSTVKHHLDALEADGYLVR 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + L T+ +L P + +EK + + G G Sbjct: 61 EPGLPRALDLTDRARAELGITPSTQ--PSEKVVRIEVPVSHVEEEGTAIPLVGRIAAGAP 118 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 E + SM+ GD +++ S + G+ + Sbjct: 119 ITAEQHVEDVFRLPTSMTGHGDLFMLEVSGESMVDAGIFDGDYVVIRSQNEARNGEFVAA 178 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L S G + L+ N Y + + +++ Sbjct: 179 MID-GEATVKEL-SITGGHVWLLPHNADYSPI--PGDEATILGKVV 220 >gi|218549402|ref|YP_002383193.1| repressor protein of bacteriophage origin [Escherichia fergusonii ATCC 35469] gi|218356943|emb|CAQ89575.1| repressor protein of bacteriophage origin [Escherichia fergusonii ATCC 35469] Length = 235 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 15/211 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K+ + + + + L +AR L +K E R ++ K Sbjct: 8 RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 65 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L D+ + T+ + L F G + + Sbjct: 66 LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 116 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E R IY+ + + SM P + G+ +++ +V GD + ++ G + Sbjct: 117 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTIEGHNM 176 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 K+L R S+N + T+ + Sbjct: 177 IKILGYDRDGEYQFTSINQDHRPITLPYHQV 207 >gi|133873987|gb|ABO40681.1| prophage repressor [Enterobacteria phage HK244] Length = 237 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 66 --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ T P + G +++++ V GD Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|9626292|ref|NP_040628.1| repressor [Enterobacteria phage lambda] gi|238903101|ref|YP_002928897.1| Repressor protein CI [Escherichia coli BW2952] gi|133353|sp|P03034|RPC1_LAMBD RecName: Full=Repressor protein CI gi|15057|emb|CAA24991.1| unnamed protein product [Enterobacteria phage lambda] gi|215147|gb|AAA96581.1| rexb (exclusion;144) [Enterobacteria phage lambda] gi|8919960|emb|CAB96428.1| phage lambda repressor protein CI [Escherichia coli] gi|60594765|gb|AAX29986.1| lambda repressor CI [Expression vector pINV-110] gi|62114612|gb|AAX63486.1| lambda repressor protein [Low threshold vector pLTSUB-302] gi|238863451|gb|ACR65449.1| Repressor protein CI [Escherichia coli BW2952] Length = 237 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 66 --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ T P + G +++++ V GD Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|9634163|ref|NP_037735.1| prophage repressor CI [Enterobacteria phage HK97] gi|193069559|ref|ZP_03050512.1| prophage repressor [Escherichia coli E110019] gi|215487607|ref|YP_002330038.1| predicted repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|218688908|ref|YP_002397120.1| Repressor protein CI from prophage [Escherichia coli ED1a] gi|300825481|ref|ZP_07105548.1| peptidase S24-like domain protein [Escherichia coli MS 119-7] gi|6901592|gb|AAF31095.1|AF069529_8 prophage repressor CI [Enterobacteria phage HK97] gi|133874013|gb|ABO40704.1| prophage repressor [Enterobacteria phage mEp234] gi|133874022|gb|ABO40712.1| prophage repressor [Enterobacteria phage HK106] gi|192957106|gb|EDV87556.1| prophage repressor [Escherichia coli E110019] gi|215265679|emb|CAS10082.1| predicted repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|218426472|emb|CAR07300.1| Repressor protein CI from prophage [Escherichia coli ED1a] gi|300522067|gb|EFK43136.1| peptidase S24-like domain protein [Escherichia coli MS 119-7] Length = 237 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 66 --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ T P + G +++++ V GD Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|326333212|ref|ZP_08199459.1| repressor LexA [Nocardioidaceae bacterium Broad-1] gi|325948856|gb|EGD40949.1| repressor LexA [Nocardioidaceae bacterium Broad-1] Length = 254 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 61/225 (27%), Gaps = 23/225 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGI----EGRNRWPS 54 ++I + E+ PS + GL TS ++ G+ R R Sbjct: 34 QQRILAHLRDSIEQRGYPPSMREIGAAVGLTSTSSVAHQLRALEQRGLIRKDPKRPRALE 93 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + ++ + + L + G + Sbjct: 94 VFLPEVMAHRKAMSGEETEPTITAEAVVNPNPDAAMVPLVGRIAAGGPILAEETSSQQSV 153 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + +P+ + SM+ GD +++ G+ + Sbjct: 154 EDVFPLPKQLVGN-------GDLFLLSVSGDSMVDAAICDGDFVVVRQQPTAENGEIVAA 206 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K L + + L+ N Y + + + ++ Sbjct: 207 LID-GEATVKTLSRK-DGKVWLLPHNAAYEPI--DGTHATILGKV 247 >gi|312870861|ref|ZP_07730966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312872168|ref|ZP_07732241.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311092252|gb|EFQ50623.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311093551|gb|EFQ51890.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] Length = 438 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 68/233 (29%), Gaps = 33/233 (14%) Query: 12 AIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +++N+ LA K G ++ ++ ++ P + + +I + + Sbjct: 213 NLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYT-----PKIKVLAQIADIFHVDLD 267 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------------------- 109 L++ ++ +T K+ + + S + V+ Sbjct: 268 DLMNKDLTNSQTKVDKDSLVEQIAETSSLLHISRQAKVYNYAREQLDEQLNEKRSIYVVG 327 Query: 110 --PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 G + D + SM P I+ + + Sbjct: 328 TSAAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEI 384 Query: 168 GDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ + + + K + I L S+N Y + + +++ Sbjct: 385 GEIGIFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 437 >gi|293192309|ref|ZP_06609420.1| repressor LexA [Actinomyces odontolyticus F0309] gi|292820224|gb|EFF79218.1| repressor LexA [Actinomyces odontolyticus F0309] Length = 226 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 13/226 (5%) Query: 1 MTSFS----HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 MT S H+ I I+ PS +A GL S K +E Sbjct: 1 MTERSISDRHRAILRVINEKLASSGFPPSVREIASAVGLASPSTVKHHLDALEADGYLVR 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + L T+ +L P + +EK + + G G Sbjct: 61 EPGLPRALDLTDRARAELGITPSTQ--PSEKVVRIEVPISHVEEEGTAIPLVGRIAAGAP 118 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 E + SM+ GD +++ S + G+ + Sbjct: 119 ITAEQHVEDVFRLPTSMTGHGDLFMLEVSGESMVDAGIFDGDYVVIRSQNEARNGEFVAA 178 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L S G + L+ N Y + + +++ Sbjct: 179 MID-GEATVKEL-SITGGHVWLLPHNADYSPI--PGDEATILGKVV 220 >gi|222151244|ref|YP_002560398.1| SOS regulatory LexA protein [Macrococcus caseolyticus JCSC5402] gi|222120367|dbj|BAH17702.1| SOS regulatory LexA protein [Macrococcus caseolyticus JCSC5402] Length = 206 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 21/225 (9%), Positives = 51/225 (22%), Gaps = 31/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + ++I+E + + PS + GL ++ + Sbjct: 1 MRELTKRQEEIYEYLKHIVSTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + E + P + N Sbjct: 50 ------LEEKGYIKRDPTKPRAIEIMHGENSQDYSEATIHVPVIGKVTAGVPITAIENVE 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 +P + + + + SM D +I+ GD ++ Sbjct: 104 EYFPLPAHFTSSHN-----SDIFILEVVGESMIEAGILDRDKVIVRRQSIAENGDIIVAM 158 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N ++ + + +++ Sbjct: 159 TDEDEATVKRFFK-ENNRYRLQPENLTMEPLYLDS--VTVLGKVV 200 >gi|15924329|ref|NP_371863.1| LexA repressor [Staphylococcus aureus subsp. aureus Mu50] gi|15926920|ref|NP_374453.1| LexA repressor [Staphylococcus aureus subsp. aureus N315] gi|82750933|ref|YP_416674.1| LexA repressor [Staphylococcus aureus RF122] gi|148267827|ref|YP_001246770.1| LexA repressor [Staphylococcus aureus subsp. aureus JH9] gi|150393889|ref|YP_001316564.1| LexA repressor [Staphylococcus aureus subsp. aureus JH1] gi|156979659|ref|YP_001441918.1| LexA repressor [Staphylococcus aureus subsp. aureus Mu3] gi|253316479|ref|ZP_04839692.1| LexA repressor [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731972|ref|ZP_04866137.1| LexA repressor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733414|ref|ZP_04867579.1| LexA repressor [Staphylococcus aureus subsp. aureus TCH130] gi|255006127|ref|ZP_05144728.2| LexA repressor [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795604|ref|ZP_05644583.1| LexA repressor [Staphylococcus aureus A9781] gi|258413414|ref|ZP_05681690.1| SOS regulatory LexA protein [Staphylococcus aureus A9763] gi|258420477|ref|ZP_05683419.1| LexA repressor [Staphylococcus aureus A9719] gi|258424809|ref|ZP_05687683.1| LexA repressor [Staphylococcus aureus A9635] gi|258434747|ref|ZP_05688821.1| SOS regulatory LexA protein [Staphylococcus aureus A9299] gi|258444677|ref|ZP_05693006.1| SOS-response transcriptional repressor [Staphylococcus aureus A8115] gi|258447489|ref|ZP_05695633.1| LexA repressor [Staphylococcus aureus A6300] gi|258449330|ref|ZP_05697433.1| SOS-response transcriptional repressor [Staphylococcus aureus A6224] gi|258454711|ref|ZP_05702675.1| SOS regulatory LexA protein [Staphylococcus aureus A5937] gi|269202962|ref|YP_003282231.1| LexA repressor [Staphylococcus aureus subsp. aureus ED98] gi|282892829|ref|ZP_06301064.1| LexA repressor [Staphylococcus aureus A8117] gi|282929154|ref|ZP_06336734.1| LexA repressor [Staphylococcus aureus A10102] gi|295406281|ref|ZP_06816088.1| LexA repressor [Staphylococcus aureus A8819] gi|296275375|ref|ZP_06857882.1| LexA repressor [Staphylococcus aureus subsp. aureus MR1] gi|297244510|ref|ZP_06928393.1| LexA repressor [Staphylococcus aureus A8796] gi|54037735|sp|P65820|LEXA_STAAN RecName: Full=LexA repressor gi|54041546|sp|P65819|LEXA_STAAM RecName: Full=LexA repressor gi|123741035|sp|Q2YXS8|LEXA_STAAB RecName: Full=LexA repressor gi|171769944|sp|A7X1Z4|LEXA_STAA1 RecName: Full=LexA repressor gi|13701137|dbj|BAB42432.1| SOS regulatory LexA protein [Staphylococcus aureus subsp. aureus N315] gi|14247110|dbj|BAB57501.1| SOS regulatory LexA protein [Staphylococcus aureus subsp. aureus Mu50] gi|82656464|emb|CAI80886.1| DNA damage SOS regulatory repressor protein [Staphylococcus aureus RF122] gi|147740896|gb|ABQ49194.1| SOS-response transcriptional repressor, LexA [Staphylococcus aureus subsp. aureus JH9] gi|149946341|gb|ABR52277.1| LexA repressor [Staphylococcus aureus subsp. aureus JH1] gi|156721794|dbj|BAF78211.1| SOS regulatory LexA protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724382|gb|EES93111.1| LexA repressor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728468|gb|EES97197.1| LexA repressor [Staphylococcus aureus subsp. aureus TCH130] gi|257789576|gb|EEV27916.1| LexA repressor [Staphylococcus aureus A9781] gi|257839978|gb|EEV64446.1| SOS regulatory LexA protein [Staphylococcus aureus A9763] gi|257843425|gb|EEV67832.1| LexA repressor [Staphylococcus aureus A9719] gi|257844973|gb|EEV69013.1| LexA repressor [Staphylococcus aureus A9635] gi|257849108|gb|EEV73090.1| SOS regulatory LexA protein [Staphylococcus aureus A9299] gi|257850170|gb|EEV74123.1| SOS-response transcriptional repressor [Staphylococcus aureus A8115] gi|257853680|gb|EEV76639.1| LexA repressor [Staphylococcus aureus A6300] gi|257857318|gb|EEV80216.1| SOS-response transcriptional repressor [Staphylococcus aureus A6224] gi|257863094|gb|EEV85858.1| SOS regulatory LexA protein [Staphylococcus aureus A5937] gi|262075252|gb|ACY11225.1| LexA repressor [Staphylococcus aureus subsp. aureus ED98] gi|282589257|gb|EFB94352.1| LexA repressor [Staphylococcus aureus A10102] gi|282764826|gb|EFC04951.1| LexA repressor [Staphylococcus aureus A8117] gi|283470554|emb|CAQ49765.1| LexA repressor [Staphylococcus aureus subsp. aureus ST398] gi|285817018|gb|ADC37505.1| SOS-response repressor and protease LexA [Staphylococcus aureus 04-02981] gi|294968869|gb|EFG44891.1| LexA repressor [Staphylococcus aureus A8819] gi|297178540|gb|EFH37786.1| LexA repressor [Staphylococcus aureus A8796] gi|298694640|gb|ADI97862.1| DNA damage SOS regulatory repressor protein [Staphylococcus aureus subsp. aureus ED133] gi|302332956|gb|ADL23149.1| DNA damage-inducible repressor [Staphylococcus aureus subsp. aureus JKD6159] gi|312829736|emb|CBX34578.1| lexA repressor [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131141|gb|EFT87125.1| LexA repressor [Staphylococcus aureus subsp. aureus CGS03] gi|323441123|gb|EGA98830.1| LexA repressor [Staphylococcus aureus O11] gi|323443991|gb|EGB01602.1| LexA repressor [Staphylococcus aureus O46] gi|329727077|gb|EGG63533.1| repressor LexA [Staphylococcus aureus subsp. aureus 21172] gi|329733592|gb|EGG69920.1| repressor LexA [Staphylococcus aureus subsp. aureus 21193] Length = 207 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 32/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + +I+ I ++ + PS + GL ++ + R +G R Sbjct: 1 MRELTKRQSEIYNYIKQVVQMKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + ++ +++ + K + N Sbjct: 61 TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 159 MTEEDEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VAVIGKVI 201 >gi|228992378|ref|ZP_04152309.1| LexA repressor [Bacillus pseudomycoides DSM 12442] gi|229005925|ref|ZP_04163619.1| LexA repressor [Bacillus mycoides Rock1-4] gi|228755389|gb|EEM04740.1| LexA repressor [Bacillus mycoides Rock1-4] gi|228767403|gb|EEM16035.1| LexA repressor [Bacillus pseudomycoides DSM 12442] Length = 206 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 1 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E + K +P+ + Sbjct: 61 TK--PRAIEILGEVRIETDTQSVVQVPIVGKVTAGLPI----------------TAVESV 102 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 103 EEHFPLPASVV------AGADQVFMLRISGDSMIEAGILDGDLVVVRQQHSAYNGEIVVA 156 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 157 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILDK--VSVIGKVI 199 >gi|228476741|ref|ZP_04061407.1| transcriptional regulator [Streptococcus salivarius SK126] gi|228251612|gb|EEK10713.1| transcriptional regulator [Streptococcus salivarius SK126] Length = 229 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 16/222 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68 + + + E ++ + +A+ G+ +S+ + + + S +F + + Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 69 ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +++++ + +E+E P + G + Sbjct: 64 EHEIVEVYLELNEENRQEALRLTKALLEEQEAEKQKAPVIPLYSYKVFERLSAGTGYTY- 122 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + D SM P Y G+++++ G + G Sbjct: 123 -FGDGNYDEVFYDEELDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AVYAVDWDG 180 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I +I+ Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221 >gi|111017593|ref|YP_700565.1| repressor LexA [Rhodococcus jostii RHA1] gi|110817123|gb|ABG92407.1| repressor LexA [Rhodococcus jostii RHA1] Length = 247 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 29/218 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI H TPS + GL +S +K + E Sbjct: 49 QRRILAAIRDCVAAHGCTPSTRQIGDAVGLRSASSVSKHLKSLEEK-------------- 94 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 L + K+ + P + + + + +P Sbjct: 95 GFLRRGTAMARQLDVRPFLSEGKRGRSSENNVTVPVVGDIAAGAPILAEEHADEMLTLPR 154 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD++++ + + G+ + G+ Sbjct: 155 ELVGS-------GTVFGLRVRGESMIDAAICDGDVVVVRRQDEAHSGEIVAAMID-GEAT 206 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL R + L N Y ++ D + +++ Sbjct: 207 VKVLRRR-DGHVFLEPRNPAYA--VIDGDDAVVLGKVV 241 >gi|312866496|ref|ZP_07726714.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098190|gb|EFQ56416.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 230 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 61/220 (27%), Gaps = 15/220 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + L+ + +AR+ G+ S+ + + + + KIL Sbjct: 5 EKLKNRRKELGLSQADVARQLGISRPSYFNWENGKT--KPNQKNWTKLSKILQVNPSYFL 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLL----------YFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ + + + +K+ +G + Sbjct: 63 SEYEIVETYVQLNKSNKKKTVDFANRLLAEQGKMRSEAGRKLYAYKVYERLSAGTGYTYF 122 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + D SM P Y G+++++ G + G Sbjct: 123 NDGNYDEVFYDEKIDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AVYAVDWDGQT 181 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y + + +I+ Sbjct: 182 YIKRVYREPEG-LRLVSINQQYADKFAPYDENPRIVGKIV 220 >gi|269978126|ref|ZP_06185076.1| repressor LexA [Mobiluncus mulieris 28-1] gi|269933635|gb|EEZ90219.1| repressor LexA [Mobiluncus mulieris 28-1] Length = 278 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 63/242 (26%), Gaps = 32/242 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS------KRFGIEGRNRWPSTES 57 +++ + + R++ + PS LA GL S + ++ + P Sbjct: 35 QREVLDTLYRLSRELSYPPSVRELASAMGLSSPSSVQHHLEVLVEKGYLRRVPNQPRALE 94 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--- 114 K+ T ++ + + ++ + P G Sbjct: 95 FVKLPEGTPAATTEMAPHAPEAPKVYSETQRNNQNNSSLKTTENISATIHTIPIGVADTA 154 Query: 115 ----------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 + E + + + SM GD + Sbjct: 155 DSNAIPLVGRIAAGTPITAEELVEDTFMLPRRFTGAGELFMLEVNGESMRDAAIMNGDWV 214 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++ + + GD + G+ K + + L+ N + + + Sbjct: 215 VVRAQNEARNGDIV-AAMLEGEATVKEFSRDK-GHVWLLPHNPSFEPI--PGDGATILGK 270 Query: 218 IL 219 ++ Sbjct: 271 VV 272 >gi|283850860|ref|ZP_06368146.1| putative phage repressor [Desulfovibrio sp. FW1012B] gi|283573783|gb|EFC21757.1| putative phage repressor [Desulfovibrio sp. FW1012B] Length = 229 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 12/212 (5%) Query: 15 RMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNETICQL 72 R A+ L + + LA G+ ++ ++K+ + + + Sbjct: 21 RAAKAAGLTSQAELALLVGVHRSAVTQAKKKDAVPKAWILAVSRRAGVDADWLEFGRPDR 80 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 S T+ +GG G G Sbjct: 81 RARATSGAGETDGGLFAGVPKVRARLSAGGGSFET---AGEVEAVYPFRRDWLRRKG--- 134 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 SM P R GD ++++ + ++ K + R + Sbjct: 135 NPASMVLMDVVGNSMEPEIRHGDTVLIDQGQTGVMAHAVYAVGVEDTVLVKRVEKRP-GA 193 Query: 193 IDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 + L+S N Y + + + I R+LW Sbjct: 194 LVLLSDNRDYAPLVLSGDELDALRVIGRVLWV 225 >gi|224282627|ref|ZP_03645949.1| LexA repressor [Bifidobacterium bifidum NCIMB 41171] gi|313139786|ref|ZP_07801979.1| LexA repressor [Bifidobacterium bifidum NCIMB 41171] gi|313132296|gb|EFR49913.1| LexA repressor [Bifidobacterium bifidum NCIMB 41171] Length = 238 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 65/221 (29%), Gaps = 17/221 (7%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + ++ + +AI + PS + GL S K + +E + + + Sbjct: 24 LTERQHLVLDAIRKHIAEQGFAPSFREIGEAVGLKSPSSVKHQLHALERKGYLHISANKG 83 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + ++ + + I P + + + + Sbjct: 84 RAIE-LYDSGTDSQTATVLPFPGDTEASESILASRDVPLVGRIAAGVPITAEQHIDDVMR 142 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P+ + + + SM+ GD +++ GD + Sbjct: 143 LPQRLTGS-------GKLFMLEVHGDSMIDAAICDGDYVVIREQPSAVNGDIVAALLD-D 194 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L+ N Y + + + + +++ Sbjct: 195 EATIKTF-RKDNGHIWLIPHNPAYSPI--DGTHAQIMGKVV 232 >gi|21282955|ref|NP_646043.1| LexA repressor [Staphylococcus aureus subsp. aureus MW2] gi|49483531|ref|YP_040755.1| LexA repressor [Staphylococcus aureus subsp. aureus MRSA252] gi|49486183|ref|YP_043404.1| LexA repressor [Staphylococcus aureus subsp. aureus MSSA476] gi|57650343|ref|YP_186227.1| LexA repressor [Staphylococcus aureus subsp. aureus COL] gi|87161767|ref|YP_493934.1| LexA repressor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195063|ref|YP_499863.1| LexA repressor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|221142089|ref|ZP_03566582.1| LexA repressor [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257425406|ref|ZP_05601831.1| LexA repressor [Staphylococcus aureus subsp. aureus 55/2053] gi|257428066|ref|ZP_05604464.1| LexA repressor [Staphylococcus aureus subsp. aureus 65-1322] gi|257430697|ref|ZP_05607079.1| LexA repressor [Staphylococcus aureus subsp. aureus 68-397] gi|257433457|ref|ZP_05609815.1| LexA repressor [Staphylococcus aureus subsp. aureus E1410] gi|257436298|ref|ZP_05612345.1| LexA repressor [Staphylococcus aureus subsp. aureus M876] gi|258451738|ref|ZP_05699762.1| SOS regulatory LexA protein [Staphylococcus aureus A5948] gi|262048214|ref|ZP_06021101.1| LexA repressor [Staphylococcus aureus D30] gi|262051402|ref|ZP_06023625.1| LexA repressor [Staphylococcus aureus 930918-3] gi|282903920|ref|ZP_06311808.1| repressor LexA [Staphylococcus aureus subsp. aureus C160] gi|282905685|ref|ZP_06313540.1| LexA repressor [Staphylococcus aureus subsp. aureus Btn1260] gi|282908653|ref|ZP_06316474.1| LexA repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910922|ref|ZP_06318725.1| LexA repressor [Staphylococcus aureus subsp. aureus WBG10049] gi|282914129|ref|ZP_06321916.1| LexA repressor [Staphylococcus aureus subsp. aureus M899] gi|282916601|ref|ZP_06324359.1| LexA repressor [Staphylococcus aureus subsp. aureus D139] gi|282919051|ref|ZP_06326786.1| LexA repressor [Staphylococcus aureus subsp. aureus C427] gi|282924234|ref|ZP_06331908.1| LexA repressor [Staphylococcus aureus subsp. aureus C101] gi|283770407|ref|ZP_06343299.1| LexA repressor [Staphylococcus aureus subsp. aureus H19] gi|283958104|ref|ZP_06375555.1| repressor LexA [Staphylococcus aureus subsp. aureus A017934/97] gi|284024341|ref|ZP_06378739.1| LexA repressor [Staphylococcus aureus subsp. aureus 132] gi|293501157|ref|ZP_06667008.1| LexA repressor [Staphylococcus aureus subsp. aureus 58-424] gi|293510118|ref|ZP_06668826.1| LexA repressor [Staphylococcus aureus subsp. aureus M809] gi|293526709|ref|ZP_06671394.1| LexA repressor [Staphylococcus aureus subsp. aureus M1015] gi|294848343|ref|ZP_06789090.1| LexA repressor [Staphylococcus aureus A9754] gi|295427854|ref|ZP_06820486.1| LexA repressor [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208007|ref|ZP_06924438.1| repressor lexA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591185|ref|ZP_06949823.1| repressor lexA [Staphylococcus aureus subsp. aureus MN8] gi|300912091|ref|ZP_07129534.1| repressor lexA [Staphylococcus aureus subsp. aureus TCH70] gi|304381085|ref|ZP_07363739.1| repressor LexA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|25453101|sp|Q93SM0|LEXA_STAAW RecName: Full=LexA repressor gi|56748974|sp|Q6G9L9|LEXA_STAAS RecName: Full=LexA repressor gi|56749028|sp|Q6GH67|LEXA_STAAR RecName: Full=LexA repressor gi|61252317|sp|Q9L4P1|LEXA_STAAC RecName: Full=LexA repressor gi|123291804|sp|Q2FYU1|LEXA_STAA8 RecName: Full=LexA repressor gi|123749620|sp|Q2FH94|LEXA_STAA3 RecName: Full=LexA repressor gi|14132778|gb|AAK52314.1| LexA [Staphylococcus aureus] gi|21204394|dbj|BAB95091.1| SOS regulatory LexA protein [Staphylococcus aureus subsp. aureus MW2] gi|49241660|emb|CAG40348.1| DNA damage-inducible repressor [Staphylococcus aureus subsp. aureus MRSA252] gi|49244626|emb|CAG43057.1| DNA damage-inducible repressor [Staphylococcus aureus subsp. aureus MSSA476] gi|57284529|gb|AAW36623.1| LexA repressor [Staphylococcus aureus subsp. aureus COL] gi|87127741|gb|ABD22255.1| LexA repressor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202621|gb|ABD30431.1| LexA repressor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257271863|gb|EEV04001.1| LexA repressor [Staphylococcus aureus subsp. aureus 55/2053] gi|257274907|gb|EEV06394.1| LexA repressor [Staphylococcus aureus subsp. aureus 65-1322] gi|257278825|gb|EEV09444.1| LexA repressor [Staphylococcus aureus subsp. aureus 68-397] gi|257281550|gb|EEV11687.1| LexA repressor [Staphylococcus aureus subsp. aureus E1410] gi|257284580|gb|EEV14700.1| LexA repressor [Staphylococcus aureus subsp. aureus M876] gi|257860569|gb|EEV83393.1| SOS regulatory LexA protein [Staphylococcus aureus A5948] gi|259160777|gb|EEW45798.1| LexA repressor [Staphylococcus aureus 930918-3] gi|259163780|gb|EEW48335.1| LexA repressor [Staphylococcus aureus D30] gi|269940838|emb|CBI49220.1| LexA repressor [Staphylococcus aureus subsp. aureus TW20] gi|282313621|gb|EFB44014.1| LexA repressor [Staphylococcus aureus subsp. aureus C101] gi|282316861|gb|EFB47235.1| LexA repressor [Staphylococcus aureus subsp. aureus C427] gi|282319088|gb|EFB49440.1| LexA repressor [Staphylococcus aureus subsp. aureus D139] gi|282322197|gb|EFB52521.1| LexA repressor [Staphylococcus aureus subsp. aureus M899] gi|282325527|gb|EFB55836.1| LexA repressor [Staphylococcus aureus subsp. aureus WBG10049] gi|282327471|gb|EFB57763.1| LexA repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330977|gb|EFB60491.1| LexA repressor [Staphylococcus aureus subsp. aureus Btn1260] gi|282595538|gb|EFC00502.1| repressor LexA [Staphylococcus aureus subsp. aureus C160] gi|283460554|gb|EFC07644.1| LexA repressor [Staphylococcus aureus subsp. aureus H19] gi|283790253|gb|EFC29070.1| repressor LexA [Staphylococcus aureus subsp. aureus A017934/97] gi|290920781|gb|EFD97844.1| LexA repressor [Staphylococcus aureus subsp. aureus M1015] gi|291096162|gb|EFE26423.1| LexA repressor [Staphylococcus aureus subsp. aureus 58-424] gi|291467062|gb|EFF09580.1| LexA repressor [Staphylococcus aureus subsp. aureus M809] gi|294825143|gb|EFG41565.1| LexA repressor [Staphylococcus aureus A9754] gi|295128212|gb|EFG57846.1| LexA repressor [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887250|gb|EFH26152.1| repressor lexA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576071|gb|EFH94787.1| repressor lexA [Staphylococcus aureus subsp. aureus MN8] gi|300886337|gb|EFK81539.1| repressor lexA [Staphylococcus aureus subsp. aureus TCH70] gi|302751171|gb|ADL65348.1| DNA damage-inducible repressor [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340394|gb|EFM06334.1| repressor LexA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315194257|gb|EFU24650.1| LexA repressor [Staphylococcus aureus subsp. aureus CGS00] gi|315198595|gb|EFU28924.1| LexA repressor [Staphylococcus aureus subsp. aureus CGS01] gi|320140834|gb|EFW32681.1| repressor LexA [Staphylococcus aureus subsp. aureus MRSA131] gi|320143898|gb|EFW35670.1| repressor LexA [Staphylococcus aureus subsp. aureus MRSA177] gi|329314018|gb|AEB88431.1| LexA repressor [Staphylococcus aureus subsp. aureus T0131] Length = 207 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 32/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + +I+ I ++ + PS + GL ++ + R +G R Sbjct: 1 MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + ++ +++ + K + N Sbjct: 61 TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 159 MTEEDEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VAVIGKVI 201 >gi|152976068|ref|YP_001375585.1| LexA repressor [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189046529|sp|A7GR32|LEXA_BACCN RecName: Full=LexA repressor gi|152024820|gb|ABS22590.1| SOS-response transcriptional repressor, LexA [Bacillus cytotoxicus NVH 391-98] Length = 206 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 61/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 1 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E ++ K +P+ + Sbjct: 61 TK--PRAIEILGEERIEISTQSVVQVPIVGKVTAGLPI----------------TAVESV 102 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ N G+ ++ Sbjct: 103 EEHFPLPASII------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQHSANNGEIVVA 156 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + + I +++ Sbjct: 157 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILNT--VSVIGKVI 199 >gi|332702887|ref|ZP_08422975.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay] gi|332553036|gb|EGJ50080.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay] Length = 247 Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 23/227 (10%) Query: 13 IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ L T + LA + G+ + +KR + ++++ E+ Sbjct: 19 LRRIMYATGLRTQAQLAERLGVRRAAITDAKRRKAVPAEWFLKLCRMYQLNPVWLESGLG 78 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------GFFDSGVFPTG-----NKWNT 117 + + + ++ K P+L + P G Sbjct: 79 PMRVGEEAPQPEPQRHKGRPVLNDSEGPFHLDEFAFIPKVTAVPRMGPEGLETDAQVEGY 138 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + G + Q + SM P R GD ++L+ + ++ + Sbjct: 139 FAFRQDWLRRKGNVS---QMCLMRVAGDSMEPTLRDGDAVLLDQSQTEVVYGKIYVVGID 195 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILW 220 +V K L R + L+S N YP V +++ + + R++W Sbjct: 196 EGVVVKRLDKRP-GKLVLVSDNRQVYPPLEVALNESVSVRIVGRVIW 241 >gi|312965228|ref|ZP_07779464.1| repressor protein CI [Escherichia coli 2362-75] gi|312290112|gb|EFR17996.1| repressor protein CI [Escherichia coli 2362-75] Length = 237 Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 66 --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ T P + G +++++ V GD Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVMGKVI-ASQ 230 >gi|310287087|ref|YP_003938345.1| SOS-response transcriptional repressor, LexA [Bifidobacterium bifidum S17] gi|311063952|ref|YP_003970677.1| LexA repressor [Bifidobacterium bifidum PRL2010] gi|309251023|gb|ADO52771.1| SOS-response transcriptional repressor, LexA [Bifidobacterium bifidum S17] gi|310866271|gb|ADP35640.1| LexA repressor [Bifidobacterium bifidum PRL2010] Length = 233 Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 65/221 (29%), Gaps = 17/221 (7%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + ++ + +AI + PS + GL S K + +E + + + Sbjct: 19 LTERQHLVLDAIRKHIAEQGFAPSFREIGEAVGLKSPSSVKHQLHALERKGYLHISANKG 78 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + ++ + + I P + + + + Sbjct: 79 RAIE-LYDSGTDSQTATVLPFPGDTEASESILASRDVPLVGRIAAGVPITAEQHIDDVMR 137 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P+ + + + SM+ GD +++ GD + Sbjct: 138 LPQRLTGS-------GKLFMLEVHGDSMIDAAICDGDYVVIREQPSAVNGDIVAALLD-D 189 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L+ N Y + + + + +++ Sbjct: 190 EATIKTF-RKDNGHIWLIPHNPAYSPI--DGTHAQIMGKVV 227 >gi|281356220|ref|ZP_06242713.1| transcriptional repressor, LexA family [Victivallis vadensis ATCC BAA-548] gi|281317589|gb|EFB01610.1| transcriptional repressor, LexA family [Victivallis vadensis ATCC BAA-548] Length = 209 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 67/227 (29%), Gaps = 32/227 (14%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR--NRWPS 54 M S + K+ I E I+ +R + P+ +A + ++ R + + +R Sbjct: 1 MKSLTEKQKNILEFIEEFLDREGMAPTVYEIADNFQIKTSTVFAHLRALQKKKQLSRSSK 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 SI + A L + + G G Sbjct: 61 ARSISLMSRARGSRTMPNCALAIPLLGRVNAGLPSESIEFKE-----GEVCISNTMLGEH 115 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAI-QVNCGDRLL 172 Q + Q SM GDI+I + GD ++ Sbjct: 116 ------------------TPEQMFALRVQGESMRDLGIYDGDIVICGQGASKPRPGDIVV 157 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K + G I+L N + V ++D+ +++ Sbjct: 158 AL-VQGEVTVKSYFPKTGGRIELRPANPDFSVQVYPIADVTIQGKVV 203 >gi|325001423|ref|ZP_08122535.1| SOS-response transcriptional repressor, LexA [Pseudonocardia sp. P1] Length = 244 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 23/220 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 +K+ I +R+ PS + GL TS + +E + R P+ Sbjct: 36 QRKVLSVIRDWVDRYGYPPSVREIGDAVGLTSTSSVHHQLRTLERKGFLRRDPNRTRAVD 95 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + D R+ +PLL +G + + Sbjct: 96 VRSPEQAAAGDGADADTEAVRSERPAPAFVPLLGDIAAGGPI------LAEQAVQDVFPL 149 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + SM+ GD +++ G+ ++ G+ Sbjct: 150 PREIVG-------EGTLFLLNVKGDSMVDAAITDGDWVVVRQQPVAEQGE-VVAAMIDGE 201 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I LM N Y D + R++ Sbjct: 202 ATVKTFRRK-DGHIWLMPANEAYDPI--PGDDASILGRVV 238 >gi|322373053|ref|ZP_08047589.1| putative repressor protein [Streptococcus sp. C150] gi|321278095|gb|EFX55164.1| putative repressor protein [Streptococcus sp. C150] Length = 229 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 16/222 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68 + + + E ++ + +A+ G+ +S+ + + + S +F + + Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 69 ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +++++ + +E+E P + G + Sbjct: 64 EHEIVEVYLELNEENRQEALRLTKALLEEQEAEKQKAPVIPLYSYKVFERLSAGTGYTY- 122 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + D SM P Y G+++++ G + G Sbjct: 123 -FGDGNYDEVFYDEELDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AVYAVDWDG 180 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I +I+ Sbjct: 181 QTYIKKVYREEEG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221 >gi|312959301|ref|ZP_07773818.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens WH6] gi|311286018|gb|EFQ64582.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens WH6] Length = 244 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 33/236 (13%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +R ++P+ L R+ G+ ++ ++ G+ PS + I ++ + QL Sbjct: 10 LRELLDRDRISPTELYRRTGVPQSTLSRIL----SGKIVDPSDKHISRVAEYFRVSTDQL 65 Query: 73 LDL------PFSDGRTTEKKEKEIPLLYF-----PPSGSGGFFDSGVFPTGNKWNTVGVP 121 + K+I L S F G+ + Sbjct: 66 RGRVALGVSREEGRDPMHSELKDISLWDDDTPVNDDEVSIPFLREVELAAGSGRFVIEES 125 Query: 122 EIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---- 171 E S G +++ + SMLP+ R G + +N+ GD + Sbjct: 126 EKASLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKSAI-GDIVDGDL 184 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIEWIARILWA 221 G + K L I L S N ++ I + + W Sbjct: 185 YAINHNGQLRVKQLYRLPSG-IRLRSFNRDEHPDEDYSFQDIQDEQISILGHVFWW 239 >gi|304316828|ref|YP_003851973.1| transcriptional repressor, LexA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778330|gb|ADL68889.1| transcriptional repressor, LexA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 207 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 40/225 (17%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPST 55 S ++I E I R PS + + GL TS ++ ++ G R P+ Sbjct: 8 SLKQQEIIEFIKSEINRKGYPPSVREIGKAVGLKSTSTVHGHLSRLEKKGYI--RRDPTK 65 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++L + ++ LP T N Sbjct: 66 PRAIEVLNNDKRDLSDVIKLPVIGKVTAGSPI---------------------LAVENID 104 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 +P I + + K + SM+ GD +I+ + GD ++ Sbjct: 105 EYYSIPRDL-----IVGYEGESFILKVRGESMINAGILDGDYIIVRKQSYADNGDIIVAL 159 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N V+ + + +++ Sbjct: 160 I-EDEATVKRFYKESD-HIRLQPENPSMDPIIVDN--VMVLGKVV 200 >gi|160931490|ref|ZP_02078886.1| hypothetical protein CLOLEP_00323 [Clostridium leptum DSM 753] gi|156869555|gb|EDO62927.1| hypothetical protein CLOLEP_00323 [Clostridium leptum DSM 753] Length = 196 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 55/224 (24%), Gaps = 40/224 (17%) Query: 1 MTSF--SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M S +KI + + + + PS + GL TS + Sbjct: 1 MKKLNKSQQKILDYLRE-RSQDGVPPSVREICAATGLKSTS----------------TVH 43 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K L E+ + P + + Sbjct: 44 AHLKALEENGFISRDAGLNRAIHISGVERSVQ-------VPVLGRVTAGLPILAVEDVEG 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + E + + + SM+ GD ++ + GD ++ Sbjct: 97 YLPINESQCRGR-------ELFALRVVGESMINAGILDGDYVVAHKTPVAENGDIVVAL- 148 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N + + + R++ Sbjct: 149 LEDEATVKRFFR-EDGHIRLQPENPAFQPII--SEQVVILGRVV 189 >gi|120598006|ref|YP_962580.1| putative prophage repressor [Shewanella sp. W3-18-1] gi|153822275|ref|ZP_01974942.1| HTH-type transcriptional regulator for conjugative element SXT [Vibrio cholerae B33] gi|197286269|ref|YP_002152141.1| phage repressor [Proteus mirabilis HI4320] gi|229508706|ref|ZP_04398199.1| HTH-type transcriptional regulator for conjugative element SXT [Vibrio cholerae B33] gi|229608739|ref|YP_002879387.1| HTH-type transcriptional regulator for conjugative element SXT [Vibrio cholerae MJ-1236] gi|254850989|ref|ZP_05240339.1| transcriptional repressor [Vibrio cholerae MO10] gi|255743882|ref|ZP_05417838.1| putative prophage repressor [Vibrio cholera CIRS 101] gi|55976715|sp|Q79RI9|TR96_PRORE RecName: Full=HTH-type transcriptional regulator for conjugative element R391; AltName: Full=ORF-96 protein gi|55976716|sp|Q79S39|TRSX_VIBCH RecName: Full=HTH-type transcriptional regulator for conjugative element SXT gi|55976733|sp|Q8GJK1|TRME_SHEPU RecName: Full=HTH-type transcriptional regulator for conjugative element pMERPH gi|19882269|gb|AAM01213.1| repressor protein [IncJ plasmid R391] gi|20095172|gb|AAM08038.1| putative transcriptional regulator [Providencia rettgeri] gi|21885286|gb|AAL59692.1| transcriptional repressor [Vibrio cholerae] gi|24496497|gb|AAN60107.1| putative regulatory protein [Shewanella putrefaciens] gi|77543199|gb|ABA87012.1| transcriptional repressor [Vibrio cholerae] gi|120558099|gb|ABM24026.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24 [Shewanella sp. W3-18-1] gi|126520171|gb|EAZ77394.1| HTH-type transcriptional regulator for conjugative element SXT [Vibrio cholerae B33] gi|172051618|emb|CAQ35014.1| SetR [Photobacterium damselae subsp. piscicida] gi|194683756|emb|CAR44790.1| putative phage repressor [Proteus mirabilis HI4320] gi|229354230|gb|EEO19160.1| HTH-type transcriptional regulator for conjugative element SXT [Vibrio cholerae B33] gi|229371394|gb|ACQ61817.1| HTH-type transcriptional regulator for conjugative element SXT [Vibrio cholerae MJ-1236] gi|254846694|gb|EET25108.1| transcriptional repressor [Vibrio cholerae MO10] gi|255738513|gb|EET93902.1| putative prophage repressor [Vibrio cholera CIRS 101] gi|259156135|gb|ACV96083.1| HTH-type transcriptional regulator for conjugative element R391 [Providencia alcalifaciens Ban1] gi|259156257|gb|ACV96204.1| HTH-type transcriptional regulator for conjugative element R391 [Vibrio cholerae Ban5] gi|259156299|gb|ACV96245.1| HTH-type transcriptional regulator for conjugative element R391 [Vibrio cholerae Ind4] gi|259156467|gb|ACV96412.1| HTH-type transcriptional regulator for conjugative element R391 [Vibrio cholerae Ind5] gi|259156532|gb|ACV96476.1| HTH-type transcriptional regulator for conjugative element R391 [Vibrio cholerae Mex1] gi|259156653|gb|ACV96596.1| HTH-type transcriptional regulator for conjugative element R391 [Vibrio fluvialis Ind1] Length = 215 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 29/227 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S E ++ + +T S LAR+ G+ S ++ R T I + Sbjct: 1 MKTLS-----ERLNHALQLTGVTQSELARRIGIKQQSISQICSGKS---ARSRYTMQIAE 52 Query: 61 ILAATNETICQLLDLPF---SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 L + + + IPL+ + +G G F + Sbjct: 53 ALRVNAHWLATGDGEIGLGVGNVEVGPDIKGRIPLINWVQAGDWTEIAEG-FAHEDAEEW 111 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDRLL 172 V + + SM +G +++++ + + G ++ Sbjct: 112 REVTGKAHEG---------CFALRVKGDSMENPSGKKSIPEGAVIVVDPELPYSSGSLVV 162 Query: 173 IK-PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + + K L+ + L LN YP + + I + Sbjct: 163 ARLDDSKEATFKQLVIDGEQKY-LKPLNPQYPAIPINGN-CTIIGVV 207 >gi|332701820|ref|ZP_08421908.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay] gi|332551969|gb|EGJ49013.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay] Length = 210 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 59/213 (27%), Gaps = 23/213 (10%) Query: 20 HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD 79 +T L++K G+ ++ ++ ++P E + + + LL Sbjct: 3 REMTQQDLSQKLGVSLSTVQNFEKG------QFPKGEQLIGLAEVLETSADWLLLGREEP 56 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIY 131 G E+ + + P G+ G Sbjct: 57 GHRYERPMEVPDVTCLP-GYEYVKKVRARLSAGSGSLLTSATIEGYYAFRSDWLRRRG-- 113 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 SM P D ++++ + + ++ K + Sbjct: 114 -NPKSMVLMAVTGDSMSPEIMDEDTVLIDEGQKDIYVGKKYAIALDEEVYIKYIDKVP-G 171 Query: 192 SIDLMSLNCCYPVDTVEMSD----IEWIARILW 220 L S+N Y V++ D + I R++W Sbjct: 172 KYILRSINPLYKPIEVDLFDNSKSVRLIGRMIW 204 >gi|284045919|ref|YP_003396259.1| transcriptional repressor, LexA family [Conexibacter woesei DSM 14684] gi|283950140|gb|ADB52884.1| transcriptional repressor, LexA family [Conexibacter woesei DSM 14684] Length = 204 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 64/227 (28%), Gaps = 37/227 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53 M + ++I+E I + + RH P+ + + GL +S + +E R P Sbjct: 1 MVDLTKRQQEIFEFIKQYSSRHGYPPTVRDIGKAVGLASSSTVHAHLANLEKVGLLRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 S ++L K I P V Sbjct: 61 SKPRAIELLD------------------KAVDGIKSIVKPAGLPLVGQVQAGQPVLAEEE 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + P + G Y + + SM D++++ G+ ++ Sbjct: 103 IEDYIETPAVAGGAEGEY-------LLRVRGESMKDAGILPDDLVVVRRQETARDGEIVV 155 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N +++ + +++ Sbjct: 156 AL-VGEEATVKRFFQETD-HIRLQPENSAMEPI--RTKEVQILGKVI 198 >gi|145224537|ref|YP_001135215.1| LexA repressor [Mycobacterium gilvum PYR-GCK] gi|315444868|ref|YP_004077747.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp. Spyr1] gi|189046541|sp|A4TCN9|LEXA_MYCGI RecName: Full=LexA repressor gi|145217023|gb|ABP46427.1| SOS-response transcriptional repressor, LexA [Mycobacterium gilvum PYR-GCK] gi|315263171|gb|ADT99912.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp. Spyr1] Length = 232 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 57/219 (26%), Gaps = 23/219 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 + I + I PS + GL TS ++ + +G R Sbjct: 26 QRTILDVIRASVTTRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLR-------RDA 78 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + D P T +P F P + + +P Sbjct: 79 NRPRAVDVRAADDHPTPIVATEVAGSDALPEPTFVPVLGRIAAGGPILAEEAVEDVFPLP 138 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K SM+ GD +++ + GD + G+ Sbjct: 139 RELVG-------EGSLFLLKVVGESMVDAAICDGDWVVVRQQSVADNGDIVAAMID-GEA 190 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + LM N + +D + +++ Sbjct: 191 TVKTFKR-TKGQVWLMPHNPAFDPI--PGNDAAILGKVV 226 >gi|238926203|ref|ZP_04657963.1| repressor lexA [Selenomonas flueggei ATCC 43531] gi|238885883|gb|EEQ49521.1| repressor lexA [Selenomonas flueggei ATCC 43531] Length = 214 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 55/222 (24%), Gaps = 34/222 (15%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58 ++ +I + I PS + GL ++ ++ Sbjct: 17 STRRQSEILDYIKEFLVEKGYPPSVREIGTAVGLKSSSTVHRYLS--------------- 61 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +L D + IP+ + N + Sbjct: 62 --MLEENGMIRRDATKPRAIDIMGENPWGRTIPVPLV----GVVTAGEPILAEQNVEDVF 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + Q SM+ + GD +++ N GD ++ Sbjct: 116 SFPRGLLGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALVNG 169 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N +D++ + +++ Sbjct: 170 EAATVKRFFREK-TCIRLQPENDAMEPFY--ETDVQILGKVI 208 >gi|218885814|ref|YP_002435135.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756768|gb|ACL07667.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 238 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 63/240 (26%), Gaps = 35/240 (14%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I+ + + ++ A + G+ + + ++ R P + + I Sbjct: 2 IGRRIEEIRGK--VSRESFAAELGVHAQTLARYEKGE-----RLPDSTFLENISKRFGIA 54 Query: 69 ICQLLDLPFSDGRTTEKKE-----------------KEIPLLYFPPSGSGGFFDSGVFPT 111 LL + + + Sbjct: 55 PAWLLLGEGPKHSAERPESLNTGTPFAPPVLTPATGESHVIECTDCQIMLVPMVEARLSA 114 Query: 112 GNKWNTV--GVPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 G V V + + + SM P + D+++++ + +V Sbjct: 115 GTGSFEVGEDVERRYAFRTDFLMRKGQPSSMVLMRVTGDSMEPDIKHNDVVLIDQSQRVP 174 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-----SDIEWIARILWA 221 L + K + + + L S N YP V+ + I I R +W Sbjct: 175 RPGLLYAVGVEDLVYLKSVNAEP-GKLVLSSYNPDYPPIEVDARGDLSNGIRIIGRAVWV 233 >gi|309805572|ref|ZP_07699616.1| putative repressor LexA [Lactobacillus iners LactinV 09V1-c] gi|308165111|gb|EFO67350.1| putative repressor LexA [Lactobacillus iners LactinV 09V1-c] Length = 239 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 58/220 (26%), Gaps = 25/220 (11%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+I + + H +T + LA K+ + T+ + R + E + L Sbjct: 14 RKEISSNLKKFM--HGMTQADLAEKSDIPLTTLSGYLREKST--PNSGNLEKLAIALNVK 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEI--------------PLLYFPPSGSGGFFDSGVFPT 111 I + E ++ P + Sbjct: 70 KSDIDPRYTFTDIMDFVEKAPLGEYISPVSNVEYLYNTDTVVKQIPLLGDIACGDPITAD 129 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR- 170 N + + + KT+ SM P G I+I+ V G+ Sbjct: 130 ENIEDYIP-----ETYTRGNVPSGTLFALKTKGHSMEPTIPDGSIVIIRQQPNVEDGEIA 184 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K + ++ L N Y + + Sbjct: 185 AVLVDDDARATLKRI-KHSNDTVILQPDNREYDPIVLTPN 223 >gi|169827252|ref|YP_001697410.1| LexA repressor [Lysinibacillus sphaericus C3-41] gi|229621221|sp|B1HRJ5|LEXA_LYSSC RecName: Full=LexA repressor gi|168991740|gb|ACA39280.1| LexA repressor [Lysinibacillus sphaericus C3-41] Length = 205 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 58/227 (25%), Gaps = 37/227 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 M S + I I PS + GL ++ + R +G R P Sbjct: 1 MKKVSKRQEDILAFIKDEVRAKGYPPSVREIGEAVGLASSSTVHGHLARLEQKGFIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL ++ + + P S + N Sbjct: 61 TKPRAIEILEP--------------------EESIQKQHVIHVPLVGKVTAGSPITAIEN 100 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +P+ Q + SM GD++I+ N GD ++ Sbjct: 101 IEEYFPLPDTYGTSED------QLFMLEIMGESMIEAGILDGDLVIVKQKSTANNGDIVV 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N V + +++ Sbjct: 155 AMTAEDEATVKRFFKEKN-HFRLQPENSSMEPIIV--DQVSIGGQVV 198 >gi|332686910|ref|YP_004456684.1| repressor protein [Melissococcus plutonius ATCC 35311] gi|332370919|dbj|BAK21875.1| repressor protein [Melissococcus plutonius ATCC 35311] Length = 239 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 25/241 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M S K I I ER NLT LA S ++ + + Sbjct: 1 MMDLS-KFIGNKIKEYRERRNLTQEDLADMLNTTRQSISRYETGERKANQDMLFKLSEIY 59 Query: 54 -----------STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 S +SI I + + + + ++K+ K+ ++ + Sbjct: 60 EISINDFFPSNSKKSITTIYNELEQLRQKKVYNYAEEQLESQKQAKQSNVIPLNSNNDPL 119 Query: 103 FFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 + Q D SM P+++ +++ + Sbjct: 120 TSFDWYGHASAVTGEFLDGNENKTTIQLPKKDIPQNADFALTVNGDSMKPVFKNHEMIFV 179 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 + G ++ G+ K + + L+SLN Y ++ + I+ I + Sbjct: 180 ERTTDLPSGSIGIVVVD-GEAFIKKIY-INDDCMTLVSLNPKYEDKVIKDAQFIKVIGHV 237 Query: 219 L 219 + Sbjct: 238 I 238 >gi|282920607|ref|ZP_06328328.1| LexA repressor [Staphylococcus aureus A9765] gi|282594269|gb|EFB99256.1| LexA repressor [Staphylococcus aureus A9765] Length = 207 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 32/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + +I+ I ++ + PS + GL ++ + R +G R Sbjct: 1 MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + ++ +++ + K + N Sbjct: 61 TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 159 MTEEDEATVKRFYKEKN-RYRLQPENSTMEPIYLDS--VAVIGKVI 201 >gi|289168608|ref|YP_003446877.1| transcriptional regulator [Streptococcus mitis B6] gi|288908175|emb|CBJ23017.1| transcriptional regulator [Streptococcus mitis B6] Length = 228 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 53/218 (24%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKIL------- 62 E + + LT +A + G+ +++ +R E S E+I K+ Sbjct: 5 EKLKARRKELKLTQKEIAEQLGVSFQAYSAWERGIKEPSKEKVSQLENILKVAKGYFTQI 64 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 +E + + + Sbjct: 65 EIVRLYHSLSKQGKEKVVLYARDLAQEEQVQKVIAIPERLYEYRVYERMSAGIGASVYDD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 QNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 184 KRVYREENG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220 >gi|169334407|ref|ZP_02861600.1| hypothetical protein ANASTE_00807 [Anaerofustis stercorihominis DSM 17244] gi|169259124|gb|EDS73090.1| hypothetical protein ANASTE_00807 [Anaerofustis stercorihominis DSM 17244] Length = 213 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 27/220 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 KI + I + PS + GL TS N+ +G R S + + Sbjct: 9 QIKILDFIKAELKDKGYPPSVREIGSNVGLTSTSSVHNQLNNLEKKGYIKRGVSKQRAIE 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ + T + + + + P + N +T + Sbjct: 69 VVGFSPFTKDENQV----------DEVSLVDDVINVPIIGNVAAGYPILAEENVEDTYPL 118 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + + SM+ GD++I+ N D ++ + Sbjct: 119 PSS-------FVGKKECFMLHVKGDSMINAGILNGDLVIVKKQNTANDHDIVVALID-DE 170 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L N Y +D++ + +++ Sbjct: 171 ATVKTFFKEQN-RVRLQPENPVYDPIY--STDLKILGKVI 207 >gi|212703359|ref|ZP_03311487.1| hypothetical protein DESPIG_01402 [Desulfovibrio piger ATCC 29098] gi|212673205|gb|EEB33688.1| hypothetical protein DESPIG_01402 [Desulfovibrio piger ATCC 29098] Length = 226 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 16/202 (7%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 LA + G+ T+ + + + P E ++ AA ++ LL S T + Sbjct: 31 QDLAAQVGVSLTTIQQYENGQL------PKGEFAVRLGAALRCSLDWLLAGQGSVEGTLQ 84 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + + ++ + S + E G + + Sbjct: 85 DQWAGLVMVPMVEARLSAGTGSFETSA-DVVRHYAFREDFLRRKGS---PSHMALLRVSG 140 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P D+++++ + + R+ + KV+ + + L S N YP Sbjct: 141 DSMEPRICHNDVVLVDQSQKDPVPGRIYAVSVEDLVYLKVVNAMP-GRLILSSYNPAYPP 199 Query: 205 DTVEMSD-----IEWIARILWA 221 +D + + R +W Sbjct: 200 IEACTTDQLADLVRIVGRAVWV 221 >gi|257470636|ref|ZP_05634726.1| peptidase S24 S26A and S26B [Fusobacterium ulcerans ATCC 49185] gi|317064842|ref|ZP_07929327.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690518|gb|EFS27353.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 259 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 14/223 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K+ + ++ ++ ++R+ G+ + K R P + I K + Sbjct: 1 MEKKKEFSKYLENFMRKNGYNLEQISRETGIPVATIGHYKTG-----RRTPKNDFIDKFV 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---GGFFDSGVFPTGNKWNTVG 119 + N + ++ + + + +L G T+ Sbjct: 56 SGFNLNSQEKNEITMAIAIDRTPEVIKDNILELKNVKPIKLMEVPLFSSVSAGLGRETIA 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP---R 176 P Q SM G I+++N+ + G+ + Sbjct: 116 EPIDFISIPKT--AGNNVVAILVQGNSMEDTILDGSIVVVNTELMPEIGEIGVFLTKGSD 173 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D + K L + L S N Y +E SDI +++ Sbjct: 174 HADGLVKRLKYK-NGEYVLESDNKEYEDLRIENSDITAYGKVI 215 >gi|66046048|ref|YP_235889.1| peptidase [Pseudomonas syringae pv. syringae B728a] gi|63256755|gb|AAY37851.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] Length = 216 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 30/229 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + + +T LA AG++ + ++ + + ++ K Sbjct: 1 MTTLAQ-----RLKLARAHAKITQRKLAELAGVEQPAISQMESGKT---LKSAHLVALAK 52 Query: 61 ILAATNET-----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + + + P++ + +G P G Sbjct: 53 ACGVNADWLATGTGQMASEQSNVEIVEQPSRMYRYPVVSWVAAGEWSEAVEPYAP-GAAD 111 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRL 171 Y + + SM P +G +++++ +V G + Sbjct: 112 EY---------DVSDYKAKGPAFWLMVKGDSMTAPTAPSIPEGSQILVDTRAEVLPGKLV 162 Query: 172 L-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + K L+ G L LN YP D I ++ Sbjct: 163 IAKLGGSNEATFKKLVEDGGVRY-LKPLNSAYPTVQCS-DDCRIIGVVV 209 >gi|191173111|ref|ZP_03034644.1| transcriptional activator-regulatory protein [Escherichia coli F11] gi|190906656|gb|EDV66262.1| transcriptional activator-regulatory protein [Escherichia coli F11] Length = 212 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 23/211 (10%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 ++ LA+ +G+ + + G + I +I A L Sbjct: 1 MSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIANALGVRTEWLSSGIGPMRN 54 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--- 138 ++ K G E+ + Sbjct: 55 DGQQSGKPAVSY---SKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGR 111 Query: 139 ------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SM GD+L ++ ++ GD + K L + Sbjct: 112 KAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-K 170 Query: 193 IDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 + ++S N Y +E + + +++ Sbjct: 171 LLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 201 >gi|307126198|ref|YP_003878229.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|306483260|gb|ADM90129.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|321157139|emb|CBW39125.1| Putative phage repressor protein [Streptococcus phage 23782] gi|321157188|emb|CBW39173.1| Putative phage repressor protein [Streptococcus phage 11865] Length = 244 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 68/241 (28%), Gaps = 35/241 (14%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + + ++ LA G+ ++ + ++ IE E + KI N Sbjct: 2 NVGERIKQRRKALKMSADELAESVGVSRSTIFRYEKGDIEKV----GPEVLKKIADKLNV 57 Query: 68 TICQLLDLPFSDGRTTEK----------------KEKEIPLLYFPPSGSGGFFDSGVFPT 111 + L+ + ++ +L + + + Sbjct: 58 SPGDLMGWEDNQQELKIPTSPLVHKITEKVVKLSTPRKQKVLNYANEQLKEQNNKVITIE 117 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILIL 159 + ++ + Y D SM P Y G+++++ Sbjct: 118 EKLFEYRVFEKLSAGTGFSYFNDGNYDTVFYDKDLDHDFASWVFGDSMEPKYMNGEVVLI 177 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218 G + G K + + + L+S+N Y D I +I Sbjct: 178 KETGFDYDG-AIYAVDWDGQTYIKKVYKEKDG-LRLVSINNKYKDKFAPFEEDPRIIGKI 235 Query: 219 L 219 + Sbjct: 236 V 236 >gi|329770542|ref|ZP_08261920.1| hypothetical protein HMPREF0433_01684 [Gemella sanguinis M325] gi|328836291|gb|EGF85960.1| hypothetical protein HMPREF0433_01684 [Gemella sanguinis M325] Length = 215 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 10/208 (4%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + + N+ + LAR + P+S + + P + + I L+ Sbjct: 10 KQCLKEKNIKQAELARSTKITPSSISDWSKGKYV-----PKRDKLLAIAEFLEVNPDWLV 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + T + + T + V + E H I Sbjct: 65 GESDNMEITPLPTSTNNHINEDTEELIDNISKLPILGTICAGDGVYIEEEYDEHIFIDQG 124 Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191 D + + SM GD++ + V G + + K + + Sbjct: 125 MRADFALRVKGDSMIEAGIFDGDLVFIRQQSSVRNGKIAAVRLTEWNEASLKKIFVKNDN 184 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I L N + ++E I + Sbjct: 185 VI-LYPCNPEFEPIV--TRNVEIIGECV 209 >gi|215485810|ref|YP_002328241.1| predicted repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|218704626|ref|YP_002412145.1| repressor protein of bacteriophage origin [Escherichia coli UMN026] gi|293404507|ref|ZP_06648501.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298380285|ref|ZP_06989890.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|300896678|ref|ZP_07115193.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|215263882|emb|CAS08220.1| predicted repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|218431723|emb|CAR12605.1| repressor protein of bacteriophage origin [Escherichia coli UMN026] gi|291429093|gb|EFF02118.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298279983|gb|EFI21491.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|300359470|gb|EFJ75340.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] Length = 235 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 15/211 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K+ + + + + L +AR L +K E R ++ K Sbjct: 8 RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 65 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L D+ + T+ + G + + Sbjct: 66 LNV---------DVVWLQHGTSLNGANDEDTFSIVGKLKKGLVRVVGEAILGVDGAIEMT 116 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E R IY+ + + SM P + G+ +++ +V GD + ++ G + Sbjct: 117 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTIEGHNM 176 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 KVL R S+N + T+ + Sbjct: 177 IKVLGYDRDGEYQFTSINQDHRPITLPYHQV 207 >gi|255326350|ref|ZP_05367434.1| repressor LexA [Rothia mucilaginosa ATCC 25296] gi|255296567|gb|EET75900.1| repressor LexA [Rothia mucilaginosa ATCC 25296] Length = 224 Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 18/219 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +KI +AI E+ PS + GL +S ++ R G R + + Sbjct: 13 QQKILDAIRTEIEQKGYPPSMRQIGDMVGLASLSSVTHQLGRLETMGYIR--RDPKLPRA 70 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + +E + S E L P + + + + +P Sbjct: 71 IEVLDENGVGIHGSASSSLPELPNFEVGDEDLVPVPLVGRIAAGGPITAEQSVEDVLALP 130 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K + SM+ GD +++ + GD + + Sbjct: 131 RQLVGS-------GKLFMLKVKGDSMIDAAICDGDWVVVREQHTADNGDIVAALLD-DEA 182 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KV + LM N Y + +++ Sbjct: 183 TVKVF-RQVDGHTWLMPRNSNYEPIM--GDRATVMGKVV 218 >gi|160875085|ref|YP_001554401.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160860607|gb|ABX49141.1| transcriptional regulator, XRE family [Shewanella baltica OS195] Length = 229 Score = 91.4 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 65/227 (28%), Gaps = 23/227 (10%) Query: 9 IWEAID----------RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 IW +D + +T LA + + + + + R P E+I Sbjct: 3 IWHNLDMKMNWYDLVKSRMKEIGITQDVLAERMNMAQPTIARYLN-----KKREPDLETI 57 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNT 117 I+ + + L + + + + + + Sbjct: 58 ASIMKHVDLSHMVLTSDGLVEYPDSAIENTRVVERNMSYQRAFPVISYVQAGAWAEAIES 117 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLL- 172 V + + + SM + +G ++++++ G ++ Sbjct: 118 VPALASDEWYETTERTGEKCFWLRVSGDSMTATSGISFPEGTLILIDTERDHQSGSFVVA 177 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L+ G+ L LN YP + + + I ++ Sbjct: 178 KLTDVNEATFKKLVMDAGQKF-LKPLNNAYPTLPINGN-CKIIGVVV 222 >gi|153954204|ref|YP_001394969.1| LexA repressor [Clostridium kluyveri DSM 555] gi|219854812|ref|YP_002471934.1| hypothetical protein CKR_1469 [Clostridium kluyveri NBRC 12016] gi|189046534|sp|A5N8J0|LEXA_CLOK5 RecName: Full=LexA repressor gi|254809093|sp|B9E1Z5|LEXA_CLOK1 RecName: Full=LexA repressor gi|146347085|gb|EDK33621.1| LexA [Clostridium kluyveri DSM 555] gi|219568536|dbj|BAH06520.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 202 Score = 91.4 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 40/227 (17%) Query: 1 MTSFSHK---KIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWP 53 MT S+ +I+ I ++ PS + GL TS + ++ G + Sbjct: 1 MTERSNNRQSQIYNFIKSQIKQKGYPPSVREICTAVGLKSTSTVHSYLEKLERRGFIKRD 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +T+S ++ + + P + N Sbjct: 61 ATKS----------------------RTIEVIEKSQKKEMIEVPIIGTITAGMPIIAVEN 98 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + +P + + + + SM+ GD+ ++ GD ++ Sbjct: 99 IEDYFPLPMDYIKNKR------EIFMLRVKGESMVDAGILDGDLSLIEKVHSAENGDIVV 152 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N P V D + I R++ Sbjct: 153 ALI-ENEATLKRFFKEEN-HIRLQPENKNMPPIIV--DDCKIIGRLI 195 >gi|163798137|ref|ZP_02192073.1| hypothetical protein BAL199_00805 [alpha proteobacterium BAL199] gi|159176580|gb|EDP61158.1| hypothetical protein BAL199_00805 [alpha proteobacterium BAL199] Length = 205 Score = 91.4 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 17/208 (8%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ------LLDL 75 + +A A ++ + R GR+ P+ E + KI A + Sbjct: 1 MNAREVAEDARVNRSFVYDIMR----GRSEHPNLEKLDKIAATLKVDRNWLLHGKGEIQG 56 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 + IP + S GG + G + H + A Sbjct: 57 DEPLTHQEPDEFISIPSVEVTASMGGGTIVANEVAIGEPY---HFKSSWIAHR-LRANPA 112 Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR---S 192 + SM+P + GD+++++ + + + +VAK L Sbjct: 113 NLRIMHVEGDSMMPTLQDGDVVLVDLGRALPTPPGIFVLFDGMGLVAKRLEYIPNSDPPC 172 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILW 220 + ++S N Y +I+ I RI W Sbjct: 173 VRIISDNPFYTPYDRTADEIKIIGRIRW 200 >gi|254244958|ref|ZP_04938280.1| hypothetical protein PA2G_05837 [Pseudomonas aeruginosa 2192] gi|126198336|gb|EAZ62399.1| hypothetical protein PA2G_05837 [Pseudomonas aeruginosa 2192] Length = 221 Score = 91.4 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 69/214 (32%), Gaps = 14/214 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK-RFGIEGRNRWPSTESIFKILAATNET 68 + R+ L + LA G + + +G + E + Sbjct: 14 LTNLRRIMAERKLRSTDLADLLGKSQAQVSSFAGKNPSKGIGNQIAREIELALSLPKGML 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +++P++ +G P G+ + P P Sbjct: 74 DLSFGPGEQGNAVVLSSTGRKLPVIGSVAAGKWCEAVDTFLP-GDAEEWIEAPGPVGP-- 130 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLIS 187 K + SMLP + G+ ++++ +++ G ++ K ++ K L Sbjct: 131 -------NAFILKIEGLSMLPKFSDGEKVVIDPSLEALPGHYVVAKKTKSQEVTFKQL-R 182 Query: 188 RRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220 R G L +LN +P +++ + + R W Sbjct: 183 REGTEYFLYALNPDWPDRIIKLTEEWQICGRARW 216 >gi|291457550|ref|ZP_06596940.1| repressor LexA [Bifidobacterium breve DSM 20213] gi|291380603|gb|EFE88121.1| repressor LexA [Bifidobacterium breve DSM 20213] Length = 237 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 58/223 (26%), Gaps = 11/223 (4%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 ++ + ++ + +AI + PS + AGL S K + +E + + Sbjct: 15 STLTERQRKVLDAIRLHIDEQGFAPSFREIGEAAGLKSPSSVKHQLQVLEDK--GFIRMN 72 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K A + E + S G G Sbjct: 73 ANKGRAIEVVAPPPENTAAVTANTVEEHTAGIYAFPSESIAESQDVPLVGRIAAGVPITA 132 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176 + + SM+ GD +++ GD + Sbjct: 133 EQHVDDVMRLPERLTGSGNLFMLEVHGDSMVDAAICDGDFVVVREQNSAVNGDIVAALLD 192 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I LM N Y + + + +++ Sbjct: 193 -DEATVKTF-RKENGHIWLMPHNPAYSPI--DGTYATIMGKVV 231 >gi|323466320|gb|ADX70007.1| LexA repressor [Lactobacillus helveticus H10] Length = 208 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 29/221 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +I I + P+ + L TS +E + + Sbjct: 6 SDTKQLEILRYIYDTVDHRGFPPTVREICAAVKLSSTSTVHGHLARLERKGLLIKDATKP 65 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L T+E +L K K IP++ +G + Sbjct: 66 RALEITDEGKKELGI-----------KPKRIPVVGVVAAGQPI------LAVQDIDEYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + K SM+ GD +I+ N G+ ++ Sbjct: 109 LPPDLENDA------GELFMLKIHGESMINAGILNGDNVIVKKQNTANNGEIVVAMTDEN 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + ++ + +++ Sbjct: 163 EATVKRFYKEK-GHYRLQPENDTMAPIILP--EVTILGKVV 200 >gi|315604442|ref|ZP_07879508.1| LexA repressor [Actinomyces sp. oral taxon 180 str. F0310] gi|315314148|gb|EFU62199.1| LexA repressor [Actinomyces sp. oral taxon 180 str. F0310] Length = 226 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 59/217 (27%), Gaps = 9/217 (4%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H+ I I+ + PS +A GL S K +E + + L Sbjct: 10 HRAILRVINEKLSSNGFPPSVREIASAVGLASPSTVKHHLDALEAEGYLVREPGLPRALD 69 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T +L + + + + G G E Sbjct: 70 LTQRAREELGITGSA--PVSSGVVRIEVPISHVEEEGTPIPLVGRIAAGAPITAEQHVED 127 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + SM+ GD +++ S + G+ + G+ Sbjct: 128 VFRLPTSMTGHGDLFMLEVSGDSMVDAGIFDGDYVVIRSQNEARNGEYVAAMID-GEATV 186 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L S G + L+ N Y + + +++ Sbjct: 187 KEL-SVTGGHVWLLPHNRDYSPI--PGDEATILGKVV 220 >gi|289423803|ref|ZP_06425598.1| repressor LexA [Peptostreptococcus anaerobius 653-L] gi|289155842|gb|EFD04512.1| repressor LexA [Peptostreptococcus anaerobius 653-L] Length = 211 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 60/224 (26%), Gaps = 33/224 (14%) Query: 4 FSHKKI--WEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNR-WPSTE 56 K I + + R+ PS + +K + TS F KR R P+ Sbjct: 5 LKQKDIDVLAYLKDHSSRYGYPPSVREICKKLDIKSTSTVFAIIKRLETHNYIRKDPTKP 64 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +IL T + P S + N Sbjct: 65 RAIEILDR----------------DTESSSLNYNDEVLRLPLVGQIAAGSPILAEENIEE 108 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ-VNCGDRLLIK 174 + +P Y K + SML GD +I++ + + + G + Sbjct: 109 YIALPSS-------YVKNGSSFMLKVKGDSMLNAGILDGDYIIIDPSNKNPSNGKMVAAL 161 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L I L N Y + S + + + Sbjct: 162 IDGDTSTVKTLERI-DNKIVLKPENPDYQPMIFDTSQVSILGLV 204 >gi|315611994|ref|ZP_07886912.1| phage transcriptional repressor [Streptococcus sanguinis ATCC 49296] gi|315315983|gb|EFU64017.1| phage transcriptional repressor [Streptococcus sanguinis ATCC 49296] Length = 251 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 32/247 (12%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M++ K+I+ A ++ + + + L GL T+ + R E + Sbjct: 1 MSNNKSKEIFSANLENLMSSRGIDRNKLCSDLGLKYTTVRDWLKGIT--YPRIGKIELLA 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKK--------------EKEIPLLYFPPSGSGGFFD 105 + + + + ++ +L + + Sbjct: 59 DYFGVNKSDLIEDKAQEVKELKIPTSPLVHKITEKVVKLSTPRKQKVLNYANEQLKEQNN 118 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRK 153 + + ++ + + Y D SM P ++ Sbjct: 119 KVITIEEKLFEYRVFEKLAAGNGYSYFNDGNYDTVFYNKDLDHDFASWVFGDSMEPKFQN 178 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDI 212 G+++++ G + G K + + L+SLN Y D Sbjct: 179 GEVVLIKETGFDYDG-AVYAVDWDGQTYIKKVYREPDG-LRLVSLNPKYKDKFAPFEEDP 236 Query: 213 EWIARIL 219 I +I+ Sbjct: 237 RIIGKIV 243 >gi|163797189|ref|ZP_02191143.1| hypothetical protein BAL199_09590 [alpha proteobacterium BAL199] gi|159177484|gb|EDP62038.1| hypothetical protein BAL199_09590 [alpha proteobacterium BAL199] Length = 205 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 9/204 (4%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 + +A A ++ + R GR+ P+ E + KI A LL Sbjct: 1 MNAREVAEDARVNRSFVYDIMR----GRSEHPNLEKLDKIAATLKVDRNWLLHGKGEIQG 56 Query: 82 TTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQTQDTR 139 +E + P G + S + + A Sbjct: 57 DEPLIHQEPDEFISIPSVEVTASMGGGTIVANEVESGEPYHFKSSWIAHRLRANPANLRI 116 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR---SIDLM 196 + SM+P + GD+++++ + + + +VAK L + ++ Sbjct: 117 MHVEGDSMMPTLQDGDVVLVDLGRALPTPPGIFVLFDGMGLVAKRLEYIPNSDPPCVRII 176 Query: 197 SLNCCYPVDTVEMSDIEWIARILW 220 S N Y +I+ I RI W Sbjct: 177 SDNPFYTPYDRTADEIKIIGRIRW 200 >gi|147677688|ref|YP_001211903.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] gi|189046542|sp|A5D2J8|LEXA_PELTS RecName: Full=LexA repressor gi|146273785|dbj|BAF59534.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] Length = 203 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 65/227 (28%), Gaps = 39/227 (17%) Query: 1 MTS-FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWP 53 MT + K+ + E I + + PS + ++ GL +S K+ +G R Sbjct: 1 MTEELTPKQAAVLEFIKKSIRQRGYPPSVREIGQEVGLSSSSTVHGYLKKLEEKGYLRRD 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +T+ + E P + N Sbjct: 61 ATKPRA--------------------IEVLDNPAGEKVEFINVPVLGRVAAGVPLLAVEN 100 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + +P + + + SM GD++++ GD ++ Sbjct: 101 REDIFPLPVH-------FTGSGEFFMLTVRGDSMIEAGILNGDMVVVRRQQDAGNGDIVV 153 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L I L N ++++ + +++ Sbjct: 154 AL-LEEEATVKRLFK-ENGRIRLQPENRLMEPIY--AAEVQILGKVI 196 >gi|296450694|ref|ZP_06892447.1| repressor lexA [Clostridium difficile NAP08] gi|296260538|gb|EFH07380.1| repressor lexA [Clostridium difficile NAP08] Length = 226 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 26/221 (11%) Query: 3 SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + K+ I E I P+ + GL TS S + Sbjct: 19 DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 66 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K+ + + + ++ P + N + Sbjct: 67 EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 125 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + + K + SM+ D ++++ ++ Sbjct: 126 PFPASLVKG-------SNNFVLKVKGESMINAGILDEDYVVVDKKNTAFNSQIVVALING 178 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K G I L N + S++E + + Sbjct: 179 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 218 >gi|225868534|ref|YP_002744482.1| phage repressor-like protein [Streptococcus equi subsp. zooepidemicus] gi|225701810|emb|CAW99238.1| putative phage repressor-like protein [Streptococcus equi subsp. zooepidemicus] Length = 232 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 21/232 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M FS + + +++ L G++ + + ++ + E + K Sbjct: 1 MLMFSGIQ----LKTARLSRHISQEQLGELLGVNKMTISNWEKEKN--KPNQKHFEELIK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I E Q L + + ++++ + + Sbjct: 55 IFQLPAEYFYQENRLLLPYSQLSAFNKEKVISYSESLLEQQEKMIALPAKQKTLYPYRVY 114 Query: 121 PEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + Y D SM P Y G+++++ G Sbjct: 115 ERLSAGTGYSYFGDGNFDVVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG 174 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G K + + L+SLN YP D I +I+ Sbjct: 175 -AIYAVEWEGQTYIKKVYREENG-LRLVSLNKKYPDKFAAFDDNPRIIGKII 224 >gi|95930066|ref|ZP_01312805.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684] gi|95133760|gb|EAT15420.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684] Length = 230 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 68/219 (31%), Gaps = 18/219 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I E + + + L A++ G+ ++ + ++ P + I + Sbjct: 22 KTIGERLRFLRGKQKLP--DFAQRFGVSKSTLGRYEKGIS-----LPDAGFLAAICQQLH 74 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 LL + K P + + F T + V + Sbjct: 75 VCPQWLLMGGEKPCQPFVKDCPSGACDDSGPSCIVRDYANLSSFKTFMDFFQNWVVDQGF 134 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + + SM P + G +++++ D + + ++ + L Sbjct: 135 EVDKLLS-------VRVTGDSMAPTFAAGSLVLVDMNQPDLSADAIFALRQDEKVIVRRL 187 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 + + + N Y V ++ + R++WA Sbjct: 188 QKMVNGDVHVKTDNPRYEDQIVRSESLPILDIVGRVVWA 226 >gi|329737802|gb|EGG74038.1| peptidase S24-like protein [Staphylococcus epidermidis VCU028] Length = 203 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 77/215 (35%), Gaps = 25/215 (11%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ E + + +++ GL T+ + +R + E++ KI N + Sbjct: 7 LKRLMELKSGSIKAFSKEIGLAYTTVRSILERGVFNAK-----VENVIKICKGLNIKPEE 61 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 ++D+ + E + P S ++ N + + Sbjct: 62 IMDIEQ--------PQLETLPVKKIPVVSKISAGLPIYSEENLVDYIYF------ATKNL 107 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 ++ + SM ++++ D++++ V G ++ + K + + + Sbjct: 108 NSDKEEFGLRVSGDSMDKIFQENDVVVVEKDSIVENGQLGVVMVNGYNATVKRVRYNKNQ 167 Query: 192 SIDLMSL--NCCYPVDTV-EMSDIEWIARILWASQ 223 I L+ N + E +++ I R++ ASQ Sbjct: 168 -IILIPESNNPEHLPQVYGEDDEVKIIGRVV-ASQ 200 >gi|300922482|ref|ZP_07138595.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] gi|133874004|gb|ABO40696.1| prophage repressor [Enterobacteria phage CL707] gi|300421169|gb|EFK04480.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] Length = 237 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 69/234 (29%), Gaps = 21/234 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + KIL + E + + + + Y P S P + Sbjct: 66 --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAG-MFSPELRTF 122 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGD 169 V S + + SM P + G +++++ V GD Sbjct: 123 TKVDAERWVSTTKKA---SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGD 179 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 180 FCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|148548606|ref|YP_001268708.1| putative phage repressor [Pseudomonas putida F1] gi|148512664|gb|ABQ79524.1| putative phage repressor [Pseudomonas putida F1] Length = 280 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 67/275 (24%), Gaps = 57/275 (20%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR----------- 51 + ++ AID ++ LA + P S + G +++ Sbjct: 1 MLTGPELGAAIDAARIAKGVSKKQLADDFQVKPPSVQGWVKNGRIDKSKLMDVIAYFSDV 60 Query: 52 ----------------------WPSTES------------IFKILAATNETICQLLDLPF 77 P TE+ + K +++ L Sbjct: 61 VGPEHWGLRPGFSYESIQEVTSEPVTETAPTSAADMVRAMLAKQGKNLSDSARAQLIAAA 120 Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-------SPHNGI 130 + G PE+ S I Sbjct: 121 EATDEGNVITVDFTRPGLVGDEVRIAHYDIRAAMGGGQLPHDYPEMLKDIRVSPSHLREI 180 Query: 131 YAIQTQDTRHKTQ---DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + K SM P + D LI+N ++ GD + + + K L Sbjct: 181 GVEFEEHYHLKVVTGWGQSMEPTIKHRDPLIVNINVRDFVGDGVYLFVWDDLLYIKRLQV 240 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220 +++S N + + AR+ +W Sbjct: 241 ADEEHYEMISDNPRHKDRLIRRDMTYIQARVLLVW 275 >gi|229592828|ref|YP_002874947.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229364694|emb|CAY52645.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 258 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 63/233 (27%), Gaps = 28/233 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRNRWPSTESIFKILAATNET 68 + + + +L+ S A+ G+ P N KR GR + +I + Sbjct: 5 GDRLKALLREVHLSASDFAKNRGVTPQHVNNWFKRGVPMGR--------LNEIAELLCIS 56 Query: 69 ICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 L + L P P Sbjct: 57 SRWLRTGEGPKHPPANFLLEGPDTRKGLPTTREGSGKYLTGPACLPEKIDVEIDLHPSFT 116 Query: 125 SPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 S ++ + D SM+ + ++G L ++ + Sbjct: 117 STERIRVSLHTLQTLTVNPDRALGAYMVDNSMIDIIQQGATLAIDRGRTQIIDGEIYAVE 176 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD-----IEWIARILWAS 222 G + K L +R G + + S N +P + + +E + + W S Sbjct: 177 HDGMLRIKYLYNRPGGGLRMRSHNAGEHPDEYLTHEQRFEQNVEILGWVFWWS 229 >gi|271968374|ref|YP_003342570.1| Repressor lexA [Streptosporangium roseum DSM 43021] gi|270511549|gb|ACZ89827.1| Repressor lexA [Streptosporangium roseum DSM 43021] Length = 236 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 23/220 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGR-NRWPSTESIFK 60 +KI E I ++ PS + L TS ++ +G R P + Sbjct: 28 QRKILEVIRDSVQQRGYPPSMREIGEAVQLTSTSSVSHQLTALQRKGYLRRDPHRPRALE 87 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + + + +PL+ +G + + + Sbjct: 88 VRLPGEPALWVDPESRDDETPISRPTAAYVPLVGRIAAGGPI------LAEESIEDVFAL 141 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + + SM GD +++ + GD ++ G+ Sbjct: 142 PKQLVG-------EGTLFLLQVTGDSMIEAAIANGDWVVVRQQPVADNGD-VVAAMIDGE 193 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L+ N Y + + +++ Sbjct: 194 ATVKTFKRK-DGHVWLVPHNPNYDPI--PGDEATVLGKVV 230 >gi|317483057|ref|ZP_07942058.1| LexA repressor [Bifidobacterium sp. 12_1_47BFAA] gi|316915463|gb|EFV36884.1| LexA repressor [Bifidobacterium sp. 12_1_47BFAA] Length = 241 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 63/219 (28%), Gaps = 9/219 (4%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 +K+ +AI + PS + AGL P+S ++ + +G R + + Sbjct: 21 QRKVLDAIRTHIDEQGFAPSFREIGNTAGLKSPSSVKHQLQVLEDKGFIRMNANKGRAIE 80 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + A + + + +T + + S G G Sbjct: 81 VVAGSAPNAEKPSQASEEATSTSNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQHV 140 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + SM+ GD +++ GD + + Sbjct: 141 DDVMRLPERLTGSGTLFMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLD-DEA 199 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + LM N Y + + + +++ Sbjct: 200 TVKTF-RKENGHVWLMPHNPAYSPI--DGTHATIMGKVV 235 >gi|306814000|ref|ZP_07448173.1| Regulatory protein CI from bacteriophage origin [Escherichia coli NC101] gi|305852637|gb|EFM53085.1| Regulatory protein CI from bacteriophage origin [Escherichia coli NC101] Length = 212 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 23/211 (10%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 ++ LA+ +G+ + + G + I +I A L Sbjct: 1 MSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIANALGVRTEWLSSGIGPMRN 54 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--- 138 ++ K G E+ + Sbjct: 55 DGQQSGKPAV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGR 111 Query: 139 ------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SM GD+L ++ ++ GD + K L + Sbjct: 112 KAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-K 170 Query: 193 IDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 + ++S N Y +E + + +++ Sbjct: 171 LLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 201 >gi|89101001|ref|ZP_01173845.1| LexA repressor [Bacillus sp. NRRL B-14911] gi|89084297|gb|EAR63454.1| LexA repressor [Bacillus sp. NRRL B-14911] Length = 207 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 60/227 (26%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 M S + I E I + PS + GL ++ + R +G R P Sbjct: 1 MAKISKRQQDILEFIKEEVKAKGYPPSVREIGEAVGLASSSTVHGHLARLESKGMIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL + + P + N Sbjct: 61 TKPRAIEILELDETSHI------------------PRNNVVNVPILGKVTAGQPITAIEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +PE +P Q + SM GD +I+ N GD ++ Sbjct: 103 VEEFFPLPESMAP------AAEQVFMLEIMGESMIEAGILDGDYVIVRQQQSANNGDIVV 156 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R I L N + + + +++ Sbjct: 157 AMTDEDEATVKRFFKERD-YIRLQPENSTMEPIILRN--VSILGKVI 200 >gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 211 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 68/215 (31%), Gaps = 21/215 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + + LT + LA + G+ T+ + + P ++I ++ + Sbjct: 5 ENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSN-----PPIKTIQRLAQTLGVPVT 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 ++ ++ + P G + + +P + Sbjct: 60 IVVGDNDANDLKRALDKIRAPCARLRRRIHPGIANKPDM----LDECIELPSEVA----- 110 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + + M +Y +G +++++ + G ++ + + + L + Sbjct: 111 -LAHPNAYFLEVKGDCMNRVYPEGCLILIDPESEPRSGSIAVVSIDGSECLVRRLY-QTA 168 Query: 191 RSIDLMSL--NCCYPVDTVEMSD---IEWIARILW 220 ++ L N + +E D + ++W Sbjct: 169 HTLVLSPESWNSEHCDVIIERGDSRNVSIHGIVVW 203 >gi|240171202|ref|ZP_04749861.1| LexA repressor [Mycobacterium kansasii ATCC 12478] Length = 226 Score = 91.4 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 27/226 (11%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPS 54 ++ + ++ I I PS + GL TS ++ + +G R P+ Sbjct: 14 STLTERQRTILNVIRTSVTNRGYPPSIREIGDAVGLTSTSSVAHQLRVLERKGYLRRDPN 73 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + D+ T +P F P + Sbjct: 74 RPRAVDV--------RGVEDVVTPAAVTEVAGSDALPEPTFVPVLGRIAAGGPILAEEAV 125 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P + K SM GD +++ + GD + Sbjct: 126 EDVFPLPRELVG-------EGTLFLLKVVGDSMVEAAICDGDWVVVRQQNVADNGDIVAA 178 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K G + LM N + +D + +++ Sbjct: 179 MID-GEATVKTFKR-AGGQVWLMPHNPSFDPI--PGNDATVLGKVV 220 >gi|320192275|gb|EFW66920.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H7 str. EC1212] gi|330910960|gb|EGH39470.1| putative transcriptional regulator [Escherichia coli AA86] Length = 212 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 23/211 (10%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 ++ LA+ +G+ + + G + I +I A L Sbjct: 1 MSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIANALGVRTEWLSSGIGPMRN 54 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--- 138 ++ K G E+ + Sbjct: 55 DGQQSGKPAVN---HSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGR 111 Query: 139 ------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SM GD+L ++ ++ GD + K L + Sbjct: 112 KAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-K 170 Query: 193 IDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 + ++S N Y +E + + +++ Sbjct: 171 LLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 201 >gi|322392726|ref|ZP_08066186.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321144718|gb|EFX40119.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 228 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 56/218 (25%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETI 69 E + + LT +A + G+ +++ +R E E I K+ I Sbjct: 5 EKLKARRKELKLTQKEIADQLGISFQAYSAWERGVKEPSEEKVKQLEKILKVPKGYFTQI 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122 + + EK L + + + + Sbjct: 65 EIVCLYNSLSNQGKEKVVVYARNLAQEEQAKKVTTMPEKLFEYHVYERMSAGIGASVYDD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 RNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIHISYEEDPRIVGIIV 220 >gi|330445051|ref|ZP_08308704.1| peptidase S24-like family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489242|dbj|GAA03201.1| peptidase S24-like family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 169 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + ++ N ++ + L + IP++ +G + +P G Sbjct: 4 GFDYAARVAEKLNVSL-EWLYYGGEEIGLACSPSAHIPIVGNTQAGPDRAWLDLGYPAGY 62 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 V P K SM P +G+ ++++ + G+ +++ Sbjct: 63 SDEYVDFPTKA----------RNVYALKVVGNSMSPRILEGEAVLVDPESEPATGEEVVV 112 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + TG ++ K L + R I L S N Y + ++E++ ++ Sbjct: 113 RLTTGAVMVKTLAAIRDEKIFLDSYNHGYERMVFPLDEVEFMHPVI 158 >gi|229844288|ref|ZP_04464428.1| putative phage repressor [Haemophilus influenzae 6P18H1] gi|229812537|gb|EEP48226.1| putative phage repressor [Haemophilus influenzae 6P18H1] Length = 234 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 20/219 (9%) Query: 15 RMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++ + S AR G+ S + + + PS ++ KI A ++ L Sbjct: 16 KLIAEKSFKNNYSEFARAVGVAQASLARWVKGEAD-----PSRTNLIKITEAGGVSLDWL 70 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----PTGNKWNTVGVPEIRSPHN 128 + + +K L + + G +N P + Sbjct: 71 ALGVGNMDGVEPQAKKSEVNLIASNDETFSVIEDCREVRISAGGGGFNDEYKPYQTTKVE 130 Query: 129 GIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + SM P + G+ +I++ + + ++ + G ++ K Sbjct: 131 KAWLDSRRLKAEDCAMFLVSGDSMYPTLKDGEEIIVDRSKKELKDGKIFVLNNEGAMLVK 190 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + I L+S N Y ++ + I +++ Sbjct: 191 KVQ-ITYNGITLISQNTEYTPIELDAEQANSLIVIGQVV 228 >gi|210633086|ref|ZP_03297653.1| hypothetical protein COLSTE_01561 [Collinsella stercoris DSM 13279] gi|210159240|gb|EEA90211.1| hypothetical protein COLSTE_01561 [Collinsella stercoris DSM 13279] Length = 212 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 24/218 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I++ I + PS +A GL P++ + + + K Sbjct: 9 QQQIYDFIRSYQKEKGYPPSVREMAAAVGLSSPSTVHAHLSALEDLG--------LIK-R 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AT ++ + S TE + P + N +T +P Sbjct: 60 DATKPRALEVFNSDGSSCAVTETERPASRGTVSLPLVGRVAAGLPILAEQNIEDTFTLPT 119 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 A + + SM+ GD +++ G+ ++ G+ Sbjct: 120 EI-------ATDSSSFMLEVHGESMINAGIYNGDYIVVREQKSAMNGEIVVALID-GEAT 171 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N + + +++ Sbjct: 172 VKTFYK-EQGRVRLQPENDAMEPIY--AENPTILGKVV 206 >gi|323126871|gb|ADX24168.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 61/222 (27%), Gaps = 20/222 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + H + +A + G+ +++K ++ + P+ E++ K+ Sbjct: 5 EKLKLKRTEHGFSQLSIAERIGVSKQAYSKWEKGISQ-----PTNENLIKLENLFKVPAG 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + + + + S + ++ + Sbjct: 60 YFNEEEILNLYHQLNSPNQSKAITYVRSLVSSQNKVSHLIQETLYEYKVFEKMSAGIGSS 119 Query: 131 YAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + D SM P Y D+ ++ + G + G Sbjct: 120 IYDDGEYDTVYFNEELAHDFASWIDGDSMEPTYHNHDVALIRESGFDYDG-AIYAVVWNG 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y + + +I+ Sbjct: 179 QTYIKKVYRDEDG-LRLVSINKDYADKFAPYDENPRIVGKIV 219 >gi|269202476|ref|YP_003281745.1| putative phage repressor [Staphylococcus aureus subsp. aureus ED98] gi|262074766|gb|ACY10739.1| putative phage repressor [Staphylococcus aureus subsp. aureus ED98] Length = 238 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 37/239 (15%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K L + Sbjct: 6 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63 Query: 71 QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGGFF------------------ 104 + ++ +L + S Sbjct: 64 GFDISKNRKIENNDITTVYNQLTPPRQNNVLKYANSQLDEQNSKGDNVVDINSYKQDKVE 123 Query: 105 --DSGVFPTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNS 161 +G G + E + A + D K SM P+++ G+I+ + Sbjct: 124 VDVNGCVSAGVGE---SLHEEAIFKTYVKAPVPPHDLALKVNGNSMEPMFKDGEIIFVEK 180 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G + G+ K + + L+SLN Y + + +++ Sbjct: 181 THNIKNGQIGIFII-EGEAYLKKVF-VEDNRLTLVSLNKKYRDLHFYRNESVRLVGKVI 237 >gi|133873970|gb|ABO40666.1| prophage repressor [Enterobacteria phage HK544] Length = 237 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 19/231 (8%) Query: 4 FSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + +++ + + E L+ +A K G+ + + Sbjct: 8 LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL-- 65 Query: 58 IFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + KIL + ++ ++ + + + ++ + F G Sbjct: 66 LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFTKG 125 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + S ++ T P + G +++++ V GD + Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|315122221|ref|YP_004062710.1| LexA repressor [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495623|gb|ADR52222.1| LexA repressor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 223 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 6/220 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K++ + I E L+PS K L S + R + +R I + Sbjct: 1 MLTLKQKELLDFIQEYFEATGLSPSFDEMKKALSIASKSGIYRLVLSLEDRGF----IRR 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + + + G ++V Sbjct: 57 IPKRARALKIVKIPENLKLSERSTQDSGVGGERGKEKFCYSPVPFMGCIAAEVSISSVQK 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + +D SM+ + + DI+++ S+ + GD +L + Sbjct: 117 RMRDILVPSTMLREGKHYAFEMEDDSMIGVGILQRDIVVMCSSKSADPGDIVLAFLDDKN 176 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K ++G SI L S + Y ++ ++ +++ Sbjct: 177 ATLKRF-RQKGDSIALESAHPAYKTRIFPLNSVKIQGKLV 215 >gi|148556119|ref|YP_001263701.1| LexA repressor [Sphingomonas wittichii RW1] gi|166224652|sp|A5VB97|LEXA_SPHWW RecName: Full=LexA repressor gi|148501309|gb|ABQ69563.1| SOS-response transcriptional repressor, LexA [Sphingomonas wittichii RW1] Length = 224 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 51/220 (23%), Gaps = 7/220 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58 M + ++ I+ + ++PS K LD S + R R + Sbjct: 1 MLTRKQHELLCFINDRLLQTGVSPSFEEMKEALDLKSKSGVHRLISALEERNFIRRLPNR 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + + +P G G + Sbjct: 61 ARALEVLRMPETATAKPTAAASGKAKAAAPAVPQAANENVLEIPLH--GRIAAGLPIEAL 118 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 S + + SM GD ++ A G+ ++ Sbjct: 119 EGQSSLS-VPAALLGPGEHYALEVAGDSMVEAGILDGDYALIRRAETARDGEIVVALIAD 177 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K I L N Y + + + Sbjct: 178 AEATLKYFRREGA-MIRLDPANRAYDPQRYKPDQVRIQGK 216 >gi|307544695|ref|YP_003897174.1| phage repressor [Halomonas elongata DSM 2581] gi|307216719|emb|CBV41989.1| putative phage repressor [Halomonas elongata DSM 2581] Length = 251 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 69/233 (29%), Gaps = 30/233 (12%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +K + I R+ +AR+AG+ ++ ++ G+ PS + K+ Sbjct: 22 MQKEKPRDVIRRLINESGKRAIDVAREAGVPQSTLSRIL----TGKIEEPSDRPVAKLAE 77 Query: 64 ATNETICQLL---------------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + Q+ P K + G + Sbjct: 78 YFGVSGDQIRGREPIETEGSADKIAQHPALHESNVAPPPKLEGYVPVISWVQAGSWTEVC 137 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 V P A + + + SM P Y I+ ++ + G Sbjct: 138 NVDAVSEEMVPRPP---------ACSDRTFALRVKGQSMAPKYEPDLIIYVDPEVLPFDG 188 Query: 169 DRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 D ++ + + K + G L + N +P + ++ + E + ++ Sbjct: 189 DDVVAVLTDSNEATFKQFVEEPGDDKMLKARNPSWPDPYIPINGNCEIVGVVI 241 >gi|183448279|pdb|3BDN|A Chain A, Crystal Structure Of The Lambda Repressor gi|183448280|pdb|3BDN|B Chain B, Crystal Structure Of The Lambda Repressor Length = 236 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 5 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 64 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 65 --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 122 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ T P + G +++++ V GD Sbjct: 123 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 179 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI + L LN YP+ + +++ ASQ Sbjct: 180 CIARLGGDEFTFKKLIR-GSGQVFLQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 229 >gi|73662727|ref|YP_301508.1| LexA repressor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123747862|sp|Q49XD4|LEXA_STAS1 RecName: Full=LexA repressor gi|72495242|dbj|BAE18563.1| SOS-response transcriptional repressor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 207 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 63/226 (27%), Gaps = 32/226 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + +I+E I + PS + GL ++ + R +G R Sbjct: 1 MRELTKRQNEIFEYIKQTVHAKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E + + +++ + K + N Sbjct: 61 TK--PRAIEIVTEQLGEPINMEETIHVPVIGKVTAGIPIT---------------AVENV 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EEYFPLPEHFTSTHN-----SDIFILNVVGNSMIEAGILDGDKVIVRSQTIAENGDIIVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + + + +++ Sbjct: 159 MTEENEATVKRFFKEKA-HYRLQPENSSMDPIYL--DQVTVLGKVV 201 >gi|332850659|ref|ZP_08432906.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332867060|ref|ZP_08437357.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] gi|332730496|gb|EGJ61812.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332734253|gb|EGJ65382.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] Length = 243 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 14/216 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ER T A AG S ++ + P + I Sbjct: 31 IGARLKEERERLGYTQPVFAELAGTTKKSQIDYEKDLTQ-----PKAGYLAAIAEV-GAD 84 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + ++ S E L+ + + + + + Sbjct: 85 VGYIVTGNKSPQLQNSDFAYEFDLVNVYDVSVSAGDGAVCLGETEPTSRLAFRKDWLARH 144 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 G+YA + SM P + L++N+ + + + + K + + Sbjct: 145 GLYA--KDLVIVYAKGDSMEPTIHDKEPLLINTIDKELTDGFIYVVRNHENFWVKRVQRQ 202 Query: 189 RGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221 + L+S N Y ++++ D+E I R W Sbjct: 203 FNE-LLLLSDNEKYLPMKLDLNESTDVEIIGR--WI 235 >gi|153007564|ref|YP_001368779.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] gi|151559452|gb|ABS12950.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] Length = 235 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 42/241 (17%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + I R + T LA G+ S + + + P ++ + + Sbjct: 2 ETIGDRIRRARTQKGFTQQQLADHFGIARVSVTQWENNTTQ-----PGSDKLIGLTELLG 56 Query: 67 ETICQLLDLPFS------------------------DGRTTEKKEKEIPLLYFPPSGSGG 102 + T +K ++ + G Sbjct: 57 GDAEWYITGHGMPPISDGVRIAVKQSGHPKREMTDAPNATIGEKVTGAGVMVPVYGQAVG 116 Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 D G V P + G Y + SM P Y G++ ++ Sbjct: 117 GIDGQFLMNGTILYEVMAPPQIAEIAGAY-------GVQISGDSMFPRYEDGEVAFVDPR 169 Query: 163 IQVNCGDRLLIKPRTGD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +V GD ++ + + + K + + L N T + + + Sbjct: 170 RRVKKGDYVVAQIQFDEHEPPHAYVKRFVRHNAEELVLSQFNP-PKELTFDHDQVVSVHF 228 Query: 218 I 218 I Sbjct: 229 I 229 >gi|329122774|ref|ZP_08251346.1| transcriptional regulatory protein [Haemophilus aegyptius ATCC 11116] gi|327472038|gb|EGF17476.1| transcriptional regulatory protein [Haemophilus aegyptius ATCC 11116] Length = 234 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 67/219 (30%), Gaps = 20/219 (9%) Query: 15 RMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++ + S AR G+ S + + + PS ++ KI A ++ L Sbjct: 16 KLIAEKSFKNNYSEFARAVGVAQASLARWVKGEAD-----PSRTNLIKITEAGGVSLDWL 70 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----PTGNKWNTVGVPEIRSPHN 128 + + +K L + + G +N P + Sbjct: 71 ALGVGNMDGVEPQAKKSEVNLIASNDETFSVIEDCREVRISAGGGGFNDEYKPYQTTKVE 130 Query: 129 GIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + SM P + G+ +I++ + + ++ + G ++ K Sbjct: 131 KAWLDSRRLKAEDCAMFLVSGDSMYPTLKDGEEIIVDRSKKELKDGKIFVLNNEGAMLVK 190 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + I L+S N Y + + I +++ Sbjct: 191 KVQ-ITYNGITLISQNTEYAPIELNAEQANNLIVIGQVV 228 >gi|315038593|ref|YP_004032161.1| LexA repressor [Lactobacillus amylovorus GRL 1112] gi|325957075|ref|YP_004292487.1| LexA repressor [Lactobacillus acidophilus 30SC] gi|312276726|gb|ADQ59366.1| LexA repressor [Lactobacillus amylovorus GRL 1112] gi|325333640|gb|ADZ07548.1| LexA repressor [Lactobacillus acidophilus 30SC] gi|327183798|gb|AEA32245.1| LexA repressor [Lactobacillus amylovorus GRL 1118] Length = 208 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 29/221 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +I I E P+ + L TS +E + + Sbjct: 6 SETKQLEILRYIYDTVEHRGFPPTVREICTAVNLSSTSTVHGHLARLERKGLLIKDATKP 65 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L T E L K KEIP++ +G + Sbjct: 66 RALEITPEGKDALGI-----------KPKEIPVVGVVTAGQPI------LAVQDIDEYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + K SM+ GD +I+ N G+ ++ Sbjct: 109 LPPDLENDA------GELFMLKVHGESMINAGILNGDSVIVRKQNSANNGEIVVAMTEEN 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N + + + +++ Sbjct: 163 EATVKRFYK-ENGHYRLQPENDTMDPIILPK--VSILGKVV 200 >gi|225869607|ref|YP_002745554.1| phage repressor protein [Streptococcus equi subsp. equi 4047] gi|225699011|emb|CAW92101.1| phage repressor protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 67/246 (27%), Gaps = 39/246 (15%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + N++ LA+K G+ T+ + ++ I TE + KI N Sbjct: 2 DIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVP----TEVLEKISKILNT 57 Query: 68 TICQLLDLPFSDGR------------------TTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + + ++K Sbjct: 58 NPAYFMGWSDTPTPVQTQTLQEIIVTSKQLEQPRQEKVLSFANEQLEEQNKVVSIFDKKS 117 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH---------------KTQDTSMLPLYRKG 154 + T V + + G Y K SM PL + Sbjct: 118 EETEDYITDYVEGLVAAGLGAYQEDNLHMEVKLRADDVPDEYDTIAKVAGDSMEPLIQDN 177 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IE 213 D+L + + QVN D + G K L + L SLN Y + D I Sbjct: 178 DLLFIKVSSQVNMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNNSYEEIYLSEDDSIR 236 Query: 214 WIARIL 219 I ++ Sbjct: 237 TIGEVV 242 >gi|294787101|ref|ZP_06752355.1| repressor LexA [Parascardovia denticolens F0305] gi|294485934|gb|EFG33568.1| repressor LexA [Parascardovia denticolens F0305] Length = 276 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/249 (12%), Positives = 66/249 (26%), Gaps = 47/249 (18%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNR------------ 51 ++ EAI + PS +A GL TS ++ +G R Sbjct: 32 QVLEAIRHYSTSQGYIPSFREIAALVGLKSTSSVKHQLDVLEKKGYIRMAANKGRAIELI 91 Query: 52 --------------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 P E+ + A + ++ + + I Sbjct: 92 TSEEPQSITEQEISDGESDLEPKDENQDRETAENEGSGRPTSARAEIYPFPSQSESESIA 151 Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150 + P + + + + +PE + + + SM+ Sbjct: 152 QSHDVPLVGRIAAGVPITAEQHVDDVMRLPERLTG-------EGTLFMLEVHGDSMVDAA 204 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD +++ GD + + K + + LM N Y + Sbjct: 205 ICDGDFVVIREQKTAENGDIVAALLD-DEATVKTFRRDKSGHVWLMPHNPAYSPIDGTYA 263 Query: 211 DIEWIARIL 219 + +++ Sbjct: 264 Q--IMGKVV 270 >gi|228998438|ref|ZP_04158029.1| LexA repressor [Bacillus mycoides Rock3-17] gi|228761359|gb|EEM10314.1| LexA repressor [Bacillus mycoides Rock3-17] Length = 224 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + + I + I + PS + + GL ++ + R +G R Sbjct: 19 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 78 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + E + K +P+ + Sbjct: 79 TK--PRAIEILGEVRIETDTQSVVQVPIVGKVTAGLPI----------------TAVESV 120 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +P A Q + SM GD++++ G+ ++ Sbjct: 121 EEHFPLPASVV------AGADQVFMLRISGDSMIEAGILDGDLVVVRQQHSAYNGEIVVA 174 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 175 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILDK--VSVIGKVI 217 >gi|283797994|ref|ZP_06347147.1| repressor LexA [Clostridium sp. M62/1] gi|291074295|gb|EFE11659.1| repressor LexA [Clostridium sp. M62/1] Length = 205 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 52/218 (23%), Gaps = 31/218 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I E I + P+ + L TS S S + L Sbjct: 9 KQQEILEYIKETILKKGYPPAVREICEAVKLKSTS----------------SVHSHLETL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P + + N +P Sbjct: 53 EKNGYIRRDPTKPRTIEIIDDCFNLARREVVNVP-LIGTVAAGTPLLAQENIETYFPIPS 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P+ + K + SM GD +++ G+ ++ Sbjct: 112 ELLPN-------KEIFMLKVKGDSMIEAGIFNGDQILVEKTNTAENGEIVVALLD-DSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V +++ + +++ Sbjct: 164 VKRFYR-EDGYYRLQPENASMEPIFV--DEVQILGKVI 198 >gi|311742754|ref|ZP_07716563.1| repressor LexA [Aeromicrobium marinum DSM 15272] gi|311314382|gb|EFQ84290.1| repressor LexA [Aeromicrobium marinum DSM 15272] Length = 247 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 60/219 (27%), Gaps = 17/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGR-NRWPSTESIFK 60 +++ E + E+ PS + + GL TS ++ K+ G R P + Sbjct: 33 QRRVLEFLRDEVEKRGYPPSMREIGQAVGLVSTSSVSHQLKQLEKMGHIRRDPFRPRAME 92 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + + + P + P + + Sbjct: 93 IFLPDGGAARHAVSSASASSYDETGIDDAHPEATYVPIVGRIAAGGPILAEERVEEIFPL 152 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + SM+ GD +++ G+ + G+ Sbjct: 153 PKSLVG-------DGTLFLLEVSGDSMIDAAICSGDYVVIRQQPVAENGEIVAAMLD-GE 204 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + + L+ N Y + + + ++ Sbjct: 205 ATVKTFQRK-DGQVWLLPHNDDYSPI--DGTHATILGKV 240 >gi|301058409|ref|ZP_07199430.1| peptidase S24-like protein [delta proteobacterium NaphS2] gi|300447465|gb|EFK11209.1| peptidase S24-like protein [delta proteobacterium NaphS2] Length = 216 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 70/224 (31%), Gaps = 18/224 (8%) Query: 3 SFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 SH + DR+ ++ + + LA G++ ++ ++K+ G I + Sbjct: 1 MTSH-RFGSFFDRVTAETDIRSQTELAAVLGINRSAITQAKKKGSIP------AGWILGL 53 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGV 120 L S + + ++ E + + G F G+ Sbjct: 54 SRKFGLNPDWLERGIGSPRKDSSCQDDEFAKIPKVNARLCA--GDGSFEVGSDIQGYYAF 111 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + G SM P + GD ++++ + + L + Sbjct: 112 RKDWLNRKGS---ADAMVLMDIFGNSMAPELKDGDTVLVDESQKAIIAGALYAVGIEDTV 168 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWA 221 + K + + L S N Y + S++ I +++W Sbjct: 169 MVKRVEKHPNN-LVLQSDNKDYAPIFLNESEMNMARIIGKVVWV 211 >gi|229817994|ref|ZP_04448276.1| hypothetical protein BIFANG_03281 [Bifidobacterium angulatum DSM 20098] gi|229784598|gb|EEP20712.1| hypothetical protein BIFANG_03281 [Bifidobacterium angulatum DSM 20098] Length = 245 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 65/227 (28%), Gaps = 25/227 (11%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNR-WPSTESIFKIL 62 ++ +AI PS + AGL P+S ++ + +G R + +IL Sbjct: 23 QVLKAITTYQNERGFVPSFREIGAAAGLKSPSSVKHQLQTLEDKGYIRLNANKGRAVEIL 82 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG---------SGGFFDSGVFPTGN 113 + D R P + + + + Sbjct: 83 HDPFSEEPSGANRAEGDSRHDMATIIPFPSQNTSEAVLESRDIPLVGRIAAGTPITAEQH 142 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172 + + +PE + + SM+ GD +++ GD + Sbjct: 143 IDDVMRLPERLTGSG------GNLFMLEVHGDSMIDAAICNGDFVVVREQHTAVNGDIVA 196 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + + LM N Y + + + +++ Sbjct: 197 ALLD-GEATVKTF-RKDKGHVWLMPHNPAYSPI--DGTYATIMGKVV 239 >gi|309803473|ref|ZP_07697567.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|325913387|ref|ZP_08175754.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|308164482|gb|EFO66735.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|325477313|gb|EGC80458.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 441 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 36/236 (15%) Query: 12 AIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +++N+ LA K G ++ ++ ++ P + + +I + + Sbjct: 213 NLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYT-----PKIKVLAQIADIFHVDLD 267 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------------------- 109 L++ ++ +T K+ + + S + V+ Sbjct: 268 DLMNKDLTNSQTKVDKDSLVEQIAETSSLLHISRQAKVYNYAKEQLDEQNSGINEKRSIY 327 Query: 110 -----PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 G + D + SM P I+ + Sbjct: 328 VVGTSAAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPT 384 Query: 165 VNCGDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G+ + + + K + I L S+N Y + + +++ Sbjct: 385 LEIGEIGIFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 440 >gi|255655884|ref|ZP_05401293.1| SOS regulatory protein [Clostridium difficile QCD-23m63] Length = 211 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 26/221 (11%) Query: 3 SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + K+ I E I P+ + GL TS S + Sbjct: 4 DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 51 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K+ + + + ++ P + N + Sbjct: 52 EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 110 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + + K + SM+ D ++++ ++ Sbjct: 111 PFPASLVKG-------SNNFVLKVKGESMINAGILDEDYVVVDKKNTAFNSQIVVALING 163 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K G I L N + S++E + + Sbjct: 164 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 203 >gi|323495549|ref|ZP_08100623.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323319430|gb|EGA72367.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 201 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 37/226 (16%) Query: 7 KKIWEAIDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K I ID + + LT + LA+ G+ P + K + + E I K Sbjct: 2 KHIDTQIDELKK---LTKTAKNVDLAKVLGISPKTIQSWKSREKIPEDIFLKAEEIAK-- 56 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 S + K + GS + E Sbjct: 57 -------------TGSVAPKGYLELKYYDVEVSAGHGSLVEKEEESNAM-------VFSE 96 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + SM P + I+++N + + + G ++ Sbjct: 97 RFIRQELGF-NPNNIFLMPVRGDSMSPTLKNQSIVMVNRVDGFSNDGIYVFRFD-GRLMV 154 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-----EWIARILWASQ 223 K + I ++S N Y + SDI E I ++W+ Q Sbjct: 155 KRIQFLPHG-IKVVSDNSAYEPWELAKSDIQSADFEIIGEVVWSGQ 199 >gi|229490829|ref|ZP_04384664.1| repressor LexA [Rhodococcus erythropolis SK121] gi|229322219|gb|EEN88005.1| repressor LexA [Rhodococcus erythropolis SK121] Length = 242 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I PS + GL TS ++ + +G R Sbjct: 29 QRRVLEVIRDSVTERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDPNRPRAVD 88 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + +E S +P F P + + +P Sbjct: 89 VRGLDEVAADTAIASVSKHSGEHNSADPLPEPAFVPILGRIAAGGPILAEEAVEDVFPLP 148 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Q K SM+ GD +++ GD + G+ Sbjct: 149 RELVG-------QGSLFMLKVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID-GEA 200 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + LM N + ++ + +++ Sbjct: 201 TVKTFKR-TKKEVWLMPHNDLFEPI--PGNNAVILGKVV 236 >gi|260101385|ref|ZP_05751622.1| transcriptional repressor LexA [Lactobacillus helveticus DSM 20075] gi|260084796|gb|EEW68916.1| transcriptional repressor LexA [Lactobacillus helveticus DSM 20075] Length = 208 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 29/221 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +I I + P+ + L TS +E + + Sbjct: 6 SDTKQLEILRYIYDTVDHRGFPPTVREICAAVKLSSTSTVHGHLARLERKGLLIKDATKP 65 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L T+E +L K K IP++ +G + Sbjct: 66 RALEITDEGKKELGI-----------KPKRIPVVGVVAAGHPI------LAVQDIDEYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + K SM+ GD +I+ N G+ ++ Sbjct: 109 LPPDLENDA------GELFMLKIHGESMINAGILNGDNVIVKKQNTANNGEIVVAMTDEN 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + ++ + +++ Sbjct: 163 EATVKRFYKEKD-HYRLQPENDTMAPIILP--EVTILGKVV 200 >gi|90419608|ref|ZP_01227518.1| SOS response transcriptional repressor LexA [Aurantimonas manganoxydans SI85-9A1] gi|90336545|gb|EAS50286.1| SOS response transcriptional repressor LexA [Aurantimonas manganoxydans SI85-9A1] Length = 239 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 58/234 (24%), Gaps = 16/234 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + + ++ + PS K LD S + R R P+ Sbjct: 1 MLTRKQHDLLVFVNDRVRETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60 Query: 56 ESIFKILAAT---------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 +IL R T + S S Sbjct: 61 ARALEILKLPESIQGNRPAPVGRTGFKPSVIEGSRDTARPAPASQPSPAKASASTAIPVM 120 Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165 G G + + + + + SM GD +++ Sbjct: 121 GRIAAGVPISAIQHNTHSIVVPPDMLGSGEHYALEVKGDSMIEAGILDGDTVVIRRGDTA 180 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + K R G +I L + N Y ++ +++ Sbjct: 181 TPGEIVVALVDDEEATLKRFRRR-GDTIALEAANPAYETRIFGSDRVKVQGKLI 233 >gi|323705365|ref|ZP_08116940.1| transcriptional repressor, LexA family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535267|gb|EGB25043.1| transcriptional repressor, LexA family [Thermoanaerobacterium xylanolyticum LX-11] Length = 207 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 40/225 (17%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPST 55 S ++I + I +R PS + + GL TS ++ ++ G R P+ Sbjct: 8 SVKQQEIIDFIKSEIKRKGYPPSVREIGKAVGLRSTSTVHGHLSRLEKKGYI--RRDPTK 65 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++L+ + I ++ LP T N Sbjct: 66 PRAIEVLSNDEKYISDVVKLPVIGKVTAGTPI---------------------LAVQNIE 104 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 VP +++ K + SM+ GD +I+ + GD ++ Sbjct: 105 EYYSVPRDLITGY-----ESESFILKVRGESMINAGILDGDYIIIRKQSYADNGDIVVAL 159 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N V D+ + +++ Sbjct: 160 M-EDEATVKRFYK-ENNHIRLQPENPSMNPIIV--DDVMILGKVV 200 >gi|117926640|ref|YP_867257.1| phage repressor [Magnetococcus sp. MC-1] gi|117610396|gb|ABK45851.1| putative phage repressor [Magnetococcus sp. MC-1] Length = 215 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 22/224 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + + I + A++ + LAR +G+ + E P + I A Sbjct: 2 HAALSQRIRQCAQKVG-SGDTLARLSGIPRRTIETYLTGQSE-----PKASRLVAIAQAA 55 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + L S ++ ++ + + S G G + + E + Sbjct: 56 DVDVGWLACGQASQMESSLPDDEYTLVPRYAVEASAGH--------GGAIDEEPIVEKLA 107 Query: 126 PHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + SM P R GD+L+L+ D + + + Sbjct: 108 FKSDWIIGEMGLDSERLALINVHGDSMEPTLRGGDMLLLDLRRVEVRDDAIYVLRLENHL 167 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221 + K +I + S N Y + + I R++W Sbjct: 168 IVKRAQRMLDGTILIRSDNPIYKEQSASPEQARQLCVIGRVVWV 211 >gi|319942646|ref|ZP_08016954.1| hypothetical protein HMPREF9464_02173 [Sutterella wadsworthensis 3_1_45B] gi|319803825|gb|EFW00757.1| hypothetical protein HMPREF9464_02173 [Sutterella wadsworthensis 3_1_45B] Length = 219 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 75/214 (35%), Gaps = 8/214 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I + L+ L++ G++ S ++ + G+NR PS + + + + Sbjct: 2 NDIATRIAGLVNESGLSLRTLSKAIGVNHVSLSQW----VTGKNR-PSDKGLEALCLYFH 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRS 125 + +L S + ++ + + + G T V V Sbjct: 57 VSPAWVLYGDDSAAGAQSIRLEDAISIPLLEAEGACGAREDLSQYGCGIITMVRVTYEFI 116 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + A + SM+P GD +I++ + + D L G + K + Sbjct: 117 RNYCPSASMNSLHIITAKGDSMMPTLNNGDAVIVDVSQRDVTQDGLYAVELGGSTLIKRI 176 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 + + L+S N Y T++ D + I R+ Sbjct: 177 Q-ITHKGLLLLSDNTKYKPFTIDDGDTLNVIGRV 209 >gi|293446716|ref|ZP_06663138.1| repressor protein CI prophage [Escherichia coli B088] gi|291323546|gb|EFE62974.1| repressor protein CI prophage [Escherichia coli B088] gi|332344176|gb|AEE57510.1| phage repressor protein [Escherichia coli UMNK88] Length = 237 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 73/233 (31%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGVNALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 66 --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ P + G +++++ V+ GD Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPA---GSKPSFPDGMLILVDPEQPVDPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN +P+ + + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIKDSGQVF-LQPLNPQFPIIPCN-ENCNIVGKVI-ASQ 230 >gi|302129811|ref|ZP_07255801.1| putative phage repressor [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 259 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 65/259 (25%), Gaps = 52/259 (20%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + +LT S LA K G+ T+ ++ + + + + +I Sbjct: 2 NLSERIKLARKEAHLTQSELAEKVGIAQTAISQLESG------KTLRSSYLLQIAQECGV 55 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117 L + K+ L SG + Sbjct: 56 NSLWLQTGEGDIHTLEDPKDLWAAALEELVSGEHEDDAPLNNAVRKRIEALQAVSKFAPS 115 Query: 118 -----------VGVPEIRSPHNGIYAIQ-------------------TQDTRHKTQDTSM 147 + + + P I SM Sbjct: 116 NSLLTSEIPYLIELDDPDDPSRTAVEISATARLDLNNEILEKQGVGAEHVVAVAISGNSM 175 Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV--- 204 P+ G ++ N + ++ + G I K L G I + S N Sbjct: 176 SPVLHDGSTVLANMNESLVVDGKMYVIDHGGQIRVKALYRLPGGGIRVRSYNTAEHPDET 235 Query: 205 ---DTVEMSDIEWIARILW 220 +E S I + R+ W Sbjct: 236 YTAREMEDSRIRIMGRVFW 254 >gi|238912285|ref|ZP_04656122.1| hypothetical protein SentesTe_14286 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|322630423|gb|EFY27193.1| hypothetical protein SEEM974_08176 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322651967|gb|EFY48330.1| hypothetical protein SEEM675_00697 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656140|gb|EFY52437.1| hypothetical protein SEEM965_14889 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322687525|gb|EFY83495.1| hypothetical protein SEEM600_12912 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323198546|gb|EFZ83648.1| hypothetical protein SEEM501_10742 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323208404|gb|EFZ93343.1| hypothetical protein SEEM020_08396 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323235549|gb|EGA19633.1| hypothetical protein SEEM3312_11496 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241293|gb|EGA25329.1| hypothetical protein SEEM5258_17159 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245034|gb|EGA29036.1| hypothetical protein SEEM1156_21987 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 234 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 58/214 (27%), Gaps = 18/214 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ LT LA G + R PS E I I+ L Sbjct: 24 KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 78 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130 D + P + F GN + + EI Sbjct: 79 SDGMVDYPDSNLNNVSSPRPHTE---IRRFPLISWVSAGNWCEAIEPYQLREIEVWPETT 135 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 + + SM +G ++++ AI+ G ++ + K Sbjct: 136 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKY 195 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G+ L LN Y + + + I ++ Sbjct: 196 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 227 >gi|110598195|ref|ZP_01386472.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Chlorobium ferrooxidans DSM 13031] gi|110340209|gb|EAT58707.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Chlorobium ferrooxidans DSM 13031] Length = 241 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 64/236 (27%), Gaps = 33/236 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR--------------NRWP- 53 + I + + L K GL ++ + + W Sbjct: 7 LGTRIKSVRDHFGLRQEEFGEKIGLSGNRVSEIENDKGGTKASVLISICQEFPLNPEWLL 66 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 S+ K + + + ++ + PS + S P G Sbjct: 67 SGEGSMLKKPEESGISPDEFSRRITLL-EKQMQQFVINTIEPESPSLAKVPLYSSAVPAG 125 Query: 113 -------NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 + +P + + K SM+ + GD+L++ + Sbjct: 126 MPDPASDEIEEYLDMPASWAQG------KKNIYALKVNGDSMVDIGIMPGDLLMVEARTT 179 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G ++ G++ K L +I LM N YP + D ++ Sbjct: 180 ARDGQVVVACIN-GEVTVKTLCISNTGTISLMPENKRYPPIAITADMDFRIQGVVM 234 >gi|145634268|ref|ZP_01789979.1| probable transcription regulator [Haemophilus influenzae PittAA] gi|145268712|gb|EDK08705.1| probable transcription regulator [Haemophilus influenzae PittAA] Length = 237 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 70/222 (31%), Gaps = 12/222 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATN 66 I I + E ++ + +A K GL ++ + E T E + Sbjct: 11 IGNRIRELREFKKVSRNAMAEKLGLSLSALQNWETNQTEPVASMIITLAEELEVSPNYLL 70 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEI 123 S+ T + E + + G + + V + Sbjct: 71 TGETNATLDENSNRITLRESENSRSVADDEGFEWIDDCRDVIVTAGYGGINSDYLEVKKT 130 Query: 124 RSPHNGIYAIQ---TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + A ++K SM + G+ +I+N A + ++ + G + Sbjct: 131 KIEREWLRARGLKAEDCGKYKVCGDSMDDTLKDGEDIIVNHASKTLIDGKIFVLNNQGSM 190 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 + K + ++L+S N Y + + + I +++ Sbjct: 191 LIKRIQRTFSG-VELISDNNAYRPIKLTAEEADSLLVIGQVV 231 >gi|302391940|ref|YP_003827760.1| SOS-response transcriptional repressor, LexA [Acetohalobium arabaticum DSM 5501] gi|302204017|gb|ADL12695.1| SOS-response transcriptional repressor, LexA [Acetohalobium arabaticum DSM 5501] Length = 207 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 58/224 (25%), Gaps = 29/224 (12%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M S ++I I + PS +A GL S S +E ++ Sbjct: 1 MEDLSARQQQILNFIIEEINQKGYPPSVREIADAVGLSSPSTVHSHLTTLEEKDYIRKDP 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + +E I + + + N + Sbjct: 61 TKPRAIEVLHEPISEEETEKEMVNIPLLGRVTAGKPI---------------LAVENIED 105 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 T + Q + SM GD +I+ D ++ Sbjct: 106 TFPISLEYISDTT-----DQLFMLTVEGESMIEAGILDGDYVIVKQQNTAQNRDIVVALL 160 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K I L N SD++ + +++ Sbjct: 161 DK-EVTVKRFFKEED-HIRLQPENETMEPII--TSDVQILGKVV 200 >gi|260683547|ref|YP_003214832.1| SOS regulatory protein [Clostridium difficile CD196] gi|260687207|ref|YP_003218341.1| SOS regulatory protein [Clostridium difficile R20291] gi|260209710|emb|CBA63461.1| SOS regulatory protein [Clostridium difficile CD196] gi|260213224|emb|CBE04725.1| SOS regulatory protein [Clostridium difficile R20291] Length = 226 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 53/221 (23%), Gaps = 26/221 (11%) Query: 3 SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + K+ I E I P+ + GL TS S + Sbjct: 19 DLTEKQVLILEFIKSQITLKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 66 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K+ + + + ++ P + N + Sbjct: 67 EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 125 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + + + + SM+ D ++++ ++ Sbjct: 126 PFPASLVKG-------SNNFVLRVKGESMINAGILDEDYVVVDKKNTALNSQIVVALING 178 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K G I L N + S++E + + Sbjct: 179 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 218 >gi|322513460|ref|ZP_08066571.1| transcriptional activator-regulatory protein [Actinobacillus ureae ATCC 25976] gi|322120719|gb|EFX92602.1| transcriptional activator-regulatory protein [Actinobacillus ureae ATCC 25976] Length = 218 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 60/211 (28%), Gaps = 9/211 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I+R E L LA + + + + R + +I Sbjct: 4 LGERIERAMESKGLKRKDLAEALNISKMAVGDLINNKTK-KPR-----YLVEIADVLGVD 57 Query: 69 ICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L + E+ +++ + + + Sbjct: 58 VKWLQTGEGDISKHNLTLTEESDEIVFNMLNVQASASFGVNGDIVQIVRQIKYNATQYYD 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + SM P + GD+L ++ IQ GD + + I K + Sbjct: 118 FYRGMNPDNVEIISVKGDSMAPTFCHGDLLFVDITIQEYDGDGIYVFTYDNYIFVKRIQK 177 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G + ++S N Y + S+ ++ Sbjct: 178 -TGNTFTVLSDNKRYKDWEI-KSEYHIHGKV 206 >gi|312870912|ref|ZP_07731017.1| putative repressor LexA [Lactobacillus iners LEAF 3008A-a] gi|312872198|ref|ZP_07732271.1| putative repressor LexA [Lactobacillus iners LEAF 2062A-h1] gi|311092282|gb|EFQ50653.1| putative repressor LexA [Lactobacillus iners LEAF 2062A-h1] gi|311093602|gb|EFQ51941.1| putative repressor LexA [Lactobacillus iners LEAF 3008A-a] Length = 239 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 58/220 (26%), Gaps = 25/220 (11%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+I + + H +T + LA K+ + T+ + R + E + L Sbjct: 14 RKEISSNLKKFM--HGMTQADLAEKSDIPLTTLSGYLREKST--PNSGNLEKLAIALNVK 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEI--------------PLLYFPPSGSGGFFDSGVFPT 111 I + E ++ P + Sbjct: 70 KSDIDPRYTFTDIMDFVEKAPLGEYISPVSNVEYLYNTDTVVKQIPLLGDIACGDPITAD 129 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR- 170 N + + + KT+ SM P G I+I+ V G+ Sbjct: 130 ENIEDYIP-----ETYTRGNVPSGTLFALKTKGHSMEPTIPDGSIVIIRQQPNVEDGEIA 184 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K + ++ L N Y + + Sbjct: 185 AVLVDDDARATLKRI-KHSNDAVILQPDNREYDPIVLTPN 223 >gi|296879189|ref|ZP_06903184.1| repressor lexA [Clostridium difficile NAP07] gi|296429732|gb|EFH15584.1| repressor lexA [Clostridium difficile NAP07] Length = 215 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 26/221 (11%) Query: 3 SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + K+ I E I P+ + GL TS S + Sbjct: 8 DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K+ + + + ++ P + N + Sbjct: 56 EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + + K + SM+ D ++++ ++ Sbjct: 115 PFPASLVKG-------SNNFVLKVKGESMINAGILDEDYVVVDKKNTAFNSQIVVALING 167 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K G I L N + S++E + + Sbjct: 168 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 207 >gi|257438216|ref|ZP_05613971.1| LexA repressor [Faecalibacterium prausnitzii A2-165] gi|257199293|gb|EEU97577.1| LexA repressor [Faecalibacterium prausnitzii A2-165] Length = 211 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 62/203 (30%), Gaps = 21/203 (10%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + ++ S A++ GL ++ K K G PS E++ ++ A + +LL Sbjct: 8 ALCQARGISRSRAAQEMGLSNSTVTKWKNTGAT-----PSGETLARVSAYFGVPVGELLG 62 Query: 75 LPFSDGRTT---EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + P ++ N + + Sbjct: 63 EAVPSVQEERKLPEGAVPFDPALTAPLLGTVRAGLPMYAEENIEGYIPITR--------- 113 Query: 132 AIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + + + SM + + D +++ +V G ++ + K + G Sbjct: 114 KDGARYFWLRVRGDSMNAVGISENDEILVREQPEVENGQLAVVMVNGDEATVKYF-RQEG 172 Query: 191 RSIDL--MSLNCCYPVDTVEMSD 211 + L S N + ++ Sbjct: 173 SLVVLTPKSFNPVHQPQIYDLKR 195 >gi|126090267|ref|YP_001041722.1| putative phage repressor [Shewanella baltica OS155] gi|125999898|gb|ABN63967.1| putative phage repressor [Shewanella baltica OS155] Length = 213 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 11/216 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI I + LT L G+ S + + E + K+ Sbjct: 2 KKIGHRIKTRRKLKGLTQEALGLAVGVSKVSVSSWELGKNSMHP-----ELLNKVAGVLG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 LL EK Y + G + V +P Sbjct: 57 VDAHWLLTGESFATLEDEKDSVFWAPKYKNIKAAAGAGCCHDDCLDEDEDEVPIPIKFVK 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + Q SM P+ G I+ +NS+ + ++ + + + KV+ Sbjct: 117 NQT---NKDQIFCVCVSGDSMEPVLSDGSIIAMNSSDTIIKDGKMYLVKQDDLLRVKVIH 173 Query: 187 SRRGRSIDLMSLNCCYPVDT--VEMSDIEWIARILW 220 + L S N + +T ++ +I+ + R+ W Sbjct: 174 LLPKDMV-LKSYNPNFKDETYNIKKDNIQILGRVFW 208 >gi|319776463|ref|YP_004138951.1| putative prophage repressor CI [Haemophilus influenzae F3047] gi|329123953|ref|ZP_08252504.1| LexA family repressor/S24 family protease [Haemophilus aegyptius ATCC 11116] gi|317451054|emb|CBY87286.1| Putative prophage repressor CI [Haemophilus influenzae F3047] gi|327468035|gb|EGF13524.1| LexA family repressor/S24 family protease [Haemophilus aegyptius ATCC 11116] Length = 218 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 34/224 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58 + E I E+ ++ LA + ++ R P E I Sbjct: 4 LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A N L ++ D +E KE P +G + D + + + Sbjct: 59 SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 I S + + SMLP + +GD+++++ I G ++ Sbjct: 115 PSTVIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVVAINGDN 165 Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216 + K + +L+ LN +P + +I I Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209 >gi|48697282|ref|YP_025049.1| putative repressor protein [Lactobacillus phage phiAT3] gi|47607173|gb|AAT36509.1| putative repressor protein [Lactobacillus phage phiAT3] Length = 257 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 70/256 (27%), Gaps = 50/256 (19%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + ++ ++ LA K G+ ++ + ++ IE E + K+ A N Sbjct: 2 NVGERMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVP----IEVVAKVANALNI 57 Query: 68 TI--------------------------------CQLLDLPFSDGRTTEKKEKEIPLLYF 95 L R E + Sbjct: 58 KPEVLMGLKADTVVDKIHDTVVQLHPERQQKVYTYAEKQLNEQQNRDNVVSLDEAHVERN 117 Query: 96 PPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 + G+ G + P D K SM P Y Sbjct: 118 LDEPAFNVEVDGIVAAGYGAFNDDRDEPMDTVKIPDSAIPAHYDYCFKVVGDSMHPTYDD 177 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---------YPV 204 G+++ + V G + G K LI + L SLN YP Sbjct: 178 GELVFVQKTQDVTNGMIAV-VDINGMTFIKKLIFEEN-RLCLRSLNDDVDEKTGERIYPD 235 Query: 205 DTVEMSD-IEWIARIL 219 + +D I+ I +++ Sbjct: 236 FYADETDNIDVIGKVV 251 >gi|304436723|ref|ZP_07396691.1| repressor LexA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370203|gb|EFM23860.1| repressor LexA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 214 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 55/222 (24%), Gaps = 34/222 (15%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58 ++ +I + I PS + GL ++ ++ Sbjct: 17 STRRQSEILDYIKEFLVEKGYPPSVREIGTAVGLKSSSTVHRYLS--------------- 61 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +L D + IP+ + N + Sbjct: 62 --MLEENGMIRRDATKPRAIDIMGENPWGRTIPVPLV----GVVTAGEPILAEQNVEDVF 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + Q SM+ + GD +++ N GD ++ Sbjct: 116 SFPRGLLGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALVNG 169 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N +D++ + +++ Sbjct: 170 ESATVKRFFREK-TCIRLQPENDSMEPFY--ETDVQILGKVI 208 >gi|238765601|ref|ZP_04626506.1| 26 kDa repressor protein [Yersinia kristensenii ATCC 33638] gi|238696181|gb|EEP88993.1| 26 kDa repressor protein [Yersinia kristensenii ATCC 33638] Length = 236 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 4/191 (2%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 T A KAGLDPT ++ + R ++ +I A + L + Sbjct: 25 TQREFADKAGLDPTVVSRMLYPVGKTHKRNIGEQAARQIENALKIERGWMDGLGSASMNC 84 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPHNGIYAIQTQDTR 139 E + G + + + + + Sbjct: 85 AEIPAINHDVYRVEVLDLTVSAGPGSYLLSDYIDVLYAIEFTTEHARSLFGNRKPEDVKV 144 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 SM P GD L ++ +++ D + K L + G + ++S N Sbjct: 145 MTVSGDSMAPTLVAGDRLFVDISVRHFLTDGVYSFVFGKTFHVKRLQMQ-GNKLAVLSDN 203 Query: 200 CCYPVDTVEMS 210 Y + Sbjct: 204 PAYEKWYITED 214 >gi|284032587|ref|YP_003382518.1| SOS-response transcriptional repressor, LexA [Kribbella flavida DSM 17836] gi|283811880|gb|ADB33719.1| SOS-response transcriptional repressor, LexA [Kribbella flavida DSM 17836] Length = 262 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 56/217 (25%), Gaps = 7/217 (3%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++ + I + PS + + GL +S + +E + + + + Sbjct: 44 QRRVLDVIRDSVDSRGYPPSMREIGERVGLTSSSSVSHQLRVLEQKGLLRRDPNRPRAIE 103 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + G G E Sbjct: 104 VRYPGEVADAAARRGSVGAVRQTAYDETGAGDAHPAAAYVPVVGRIAAGGPILAEQDIEE 163 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P + + + SM GD +++ GD + G+ Sbjct: 164 VFPLPKAMVGEGTLFMLRVKGESMIEAAICDGDWVVVRQQPNAENGDIVAAMID-GEATV 222 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L+ N + + D + +++ Sbjct: 223 KTF-KKTENEIWLLPHNPAFEPI--DGHDATILGKVV 256 >gi|325687772|gb|EGD29793.1| phage transcriptional repressor [Streptococcus sanguinis SK72] gi|327461118|gb|EGF07451.1| phage transcriptional repressor [Streptococcus sanguinis SK1057] Length = 242 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 67/223 (30%), Gaps = 19/223 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68 + + + +T + +A ++ +S+N + + + S SI + E+ Sbjct: 17 GKRLKQKRIEKGMTQAEIADIIRINRSSYNSWESGRAKPNQKNLSALASILGVSDTYFES 76 Query: 69 ICQLLDLPFSDGRTTEKKE--------KEIPLLYFPPSGSGGFFDSGVFPTGNK---WNT 117 +++ ++K + + G+ ++ Sbjct: 77 EYDIMNHYLQLNPMNQQKADNYVEDLLQSQEQKKTIQLFAVEVLSDITLSAGSGRAFFDE 136 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + S D Q SM P+Y G+I ++ + G + Sbjct: 137 QETETVYSDEEQY----GYDVAAWIQGDSMKPVYEDGEIALIRATGFDYDG-AVYALSWN 191 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + K L ++SLN YP + + + ++ Sbjct: 192 ESVYIKRLYREENG-FRMVSLNKKYPDRFIPFEDEPRIVGLVV 233 >gi|313141175|ref|ZP_07803368.1| lambda repressor [Bifidobacterium bifidum NCIMB 41171] gi|313133685|gb|EFR51302.1| lambda repressor [Bifidobacterium bifidum NCIMB 41171] Length = 242 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 11 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 70 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112 I K+ + + + + G F F G Sbjct: 71 LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 130 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + S ++ T P + G +++++ V GD + Sbjct: 131 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 187 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 188 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 235 >gi|224284017|ref|ZP_03647339.1| Repressor protein CI from prophage [Bifidobacterium bifidum NCIMB 41171] Length = 281 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 50 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 109 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112 I K+ + + + + G F F G Sbjct: 110 LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 169 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + S ++ T P + G +++++ V GD + Sbjct: 170 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 226 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 227 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 274 >gi|27261132|gb|AAN86071.1| heat-sensitive lambda citS857 repressor protein/VP16 fusion protein [synthetic construct] Length = 367 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112 I K+ + + + + G F F G Sbjct: 66 LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + S ++ T P + G +++++ V GD + Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|210610265|ref|ZP_03288320.1| hypothetical protein CLONEX_00506 [Clostridium nexile DSM 1787] gi|228474131|ref|ZP_04058871.1| repressor protein CI [Capnocytophaga gingivalis ATCC 33624] gi|239622955|ref|ZP_04665986.1| lambda cI857 repressor [Clostridiales bacterium 1_7_47_FAA] gi|254708517|ref|ZP_05170345.1| Repressor protein CI [Brucella pinnipedialis M163/99/10] gi|261316018|ref|ZP_05955215.1| repressor protein [Brucella pinnipedialis M163/99/10] gi|261343115|ref|ZP_05970973.1| repressor protein CI [Enterobacter cancerogenus ATCC 35316] gi|282875750|ref|ZP_06284618.1| peptidase, S24 family [Staphylococcus epidermidis SK135] gi|283836773|ref|ZP_06356514.1| repressor protein CI [Citrobacter youngae ATCC 29220] gi|208651|gb|AAA99919.1| lambda repressor [Cloning vector pNO3097] gi|2961156|gb|AAC27033.1| lambda repressor [site-specific excision vector pFLP2] gi|4732119|gb|AAD28615.1| repressor protein [Cloning vector pWD42-09] gi|4928118|gb|AAD33415.1| lambda cI857 repressor [Cloning vector pWDYcos1.0.1] gi|16209070|gb|AAL09847.1| cI [CRIM helper plasmid pAH57] gi|16209082|gb|AAL09855.1| cI [CRIM helper plasmid pAH69] gi|16209093|gb|AAL09862.1| cI [CRIM helper plasmid pAH83] gi|16209106|gb|AAL09870.1| cI [CRIM helper plasmid pAH121] gi|16209112|gb|AAL09874.1| cI [CRIM helper plasmid pAH122] gi|16209120|gb|AAL09879.1| cI [CRIM helper plasmid pAH123] gi|16209126|gb|AAL09883.1| cI [CRIM helper plasmid pAH129] gi|16209132|gb|AAL09888.1| cI [CRIM helper plasmid pAH130] gi|16209138|gb|AAL09892.1| cI [CRIM helper plasmid pAH131] gi|16209182|gb|AAL09915.1| cI [CRIM helper plasmid pINT-ts] gi|47027959|gb|AAT08997.1| lambda repressor [Flp expression vector pFLP3] gi|55975982|gb|AAV68247.1| repressor [Broad host range Red recombinase expression vector pRKcIRed] gi|154814537|gb|ABS87301.1| CI [Cloning vector pCPP5264] gi|157955302|gb|ABW06020.1| cI857 [Triparental mating vector pCD13SK-Flp-oriT] gi|164470280|gb|ABY57979.1| CI857 [Cloning vector pFlpAB-3] gi|164470289|gb|ABY57987.1| CI857 [Cloning vector pFlpAB-4] gi|164600695|gb|ABY61785.1| CI857 [Flp expression vector pFlpAB-5] gi|197091802|gb|ACH42113.1| CI857 [Vector pCD13SK-Flp-oriT-Easd] gi|210152569|gb|EEA83575.1| hypothetical protein CLONEX_00506 [Clostridium nexile DSM 1787] gi|215789977|gb|ACJ70060.1| CI857 [Cloning vector pFlp-AB7] gi|225423174|gb|ACN91079.1| lambda repressor [Site-specific excision vector pBBR1_FLP2] gi|228274403|gb|EEK13256.1| repressor protein CI [Capnocytophaga gingivalis ATCC 33624] gi|239522634|gb|EEQ62500.1| lambda cI857 repressor [Clostridiales bacterium 1_7_47FAA] gi|261305044|gb|EEY08541.1| repressor protein [Brucella pinnipedialis M163/99/10] gi|281295465|gb|EFA87991.1| peptidase, S24 family [Staphylococcus epidermidis SK135] gi|288314592|gb|EFC53530.1| repressor protein CI [Enterobacter cancerogenus ATCC 35316] gi|291067231|gb|EFE05340.1| repressor protein CI [Citrobacter youngae ATCC 29220] Length = 237 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112 I K+ + + + + G F F G Sbjct: 66 LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + S ++ T P + G +++++ V GD + Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|315226753|ref|ZP_07868541.1| LexA repressor [Parascardovia denticolens DSM 10105] gi|315120885|gb|EFT84017.1| LexA repressor [Parascardovia denticolens DSM 10105] Length = 278 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/249 (12%), Positives = 66/249 (26%), Gaps = 47/249 (18%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNR------------ 51 ++ EAI + PS +A GL TS ++ +G R Sbjct: 34 QVLEAIRHYSTSQGYIPSFREIAALVGLKSTSSVKHQLDVLEKKGYIRMAANKGRAIELI 93 Query: 52 --------------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 P E+ + A + ++ + + I Sbjct: 94 TSEEPQSITEQEISDGESDLEPKDENQDRETAENEGSGRPTSARAEIYPFPSQSESESIA 153 Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150 + P + + + + +PE + + + SM+ Sbjct: 154 QSHDVPLVGRIAAGVPITAEQHVDDVMRLPERLTG-------EGTLFMLEVHGDSMVDAA 206 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD +++ GD + + K + + LM N Y + Sbjct: 207 ICDGDFVVIREQKTAENGDIVAALLD-DEATVKTFRRDKSGHVWLMPHNPAYSPIDGTYA 265 Query: 211 DIEWIARIL 219 + +++ Sbjct: 266 Q--IMGKVV 272 >gi|306830635|ref|ZP_07463800.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427143|gb|EFM30250.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 245 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 70/236 (29%), Gaps = 31/236 (13%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + I + + +T LA K G+ P++ + PS I KI Sbjct: 12 QIIADNITYYRKLNGITQKELAEKIGIKPSTMTDYMKLRS-----APSYGIIQKIADYFG 66 Query: 67 ETICQLLDLPFSDGRTTEKKE--------KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +E + ++ +L + + + Sbjct: 67 VKKSDIDSTFKIAEEKSEIQSVYDKLYKCRQRKVLNYANQQLNEQENEVNNVV-QLFEYD 125 Query: 119 GVPEIRSPHNGIYAIQ------------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 S G + D SM P Y GD + + ++ ++ Sbjct: 126 YYDNAVSAGTGQFLSDVQKETITLPVEYDADFVVPVYGDSMEPEYHSGDYVFVKLSVDLS 185 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS-DIEWIARIL 219 GD + GD K +I L SLN Y +V+ D I +++ Sbjct: 186 SGDIGV-FELYGDAYIKEII-IEDNHALLHSLNTNGNYKDISVDADSDFRVIGKVV 239 >gi|291621991|emb|CAX65024.1| gp43 protein [Vibrio phage VP58.5] Length = 225 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 25/228 (10%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIF 59 I + R+ LT L+R + P++ ++ + G + +T Sbjct: 5 KRMIEIDIGPVLKRIRYERGLTLQKLSRLTDDKVLPSNISRIESAGAGATLKTLTT---- 60 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTV 118 + A + +L + K ++ + + +G + +S P G+ V Sbjct: 61 -LANALGTSPSDILREAEGGDKVITKPQQVLYVPVLSWVQAGTWTESPEQPADGDYDEWV 119 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY----RKGDILILNSAIQVNCGDRLLIK 174 P S + + Q SM +G ++++ Q + ++ + Sbjct: 120 EAPRGASR---------KAFGLRVQGDSMQAPIGKSFPEGCCIVVDPTKQADNRSFVVAR 170 Query: 175 -PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220 TG+ K LI L LN Y V S++ +L W Sbjct: 171 LADTGEHTFKQLIIDGPHQY-LKPLNPSYRTIEVN-SEVHVCGVVLAW 216 >gi|161507699|ref|YP_001577655.1| LexA repressor [Lactobacillus helveticus DPC 4571] gi|172048315|sp|A8YVS7|LEXA_LACH4 RecName: Full=LexA repressor gi|160348688|gb|ABX27362.1| transcriptional repressor protein [Lactobacillus helveticus DPC 4571] Length = 208 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 29/221 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +I I + P+ + L TS +E + + Sbjct: 6 SDTKQLEILRYIYDTVDHRGFPPTVREICAAVKLSSTSTVHGHLARLERKGLLIKDATKP 65 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L T+E +L K K IP++ +G + Sbjct: 66 RALEITDEGKKELGI-----------KPKRIPVIGVVAAGHPI------LAVQDIDEYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + K SM+ GD +I+ N G+ ++ Sbjct: 109 LPPDLENDA------GELFMLKIHGESMINAGILNGDNVIVKKQNTANNGEIVVAMTDEN 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + ++ + +++ Sbjct: 163 EATVKRFYKEKD-HYRLQPENDTMAPIILP--EVTILGKVV 200 >gi|306833460|ref|ZP_07466587.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424230|gb|EFM27369.1| transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 226 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-------NRWPST 55 FS +K + + E + + +A+ + S+ + + +R Sbjct: 1 MFSGEK----LKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSRLLGV 56 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNK 114 E + + L+ + + G Sbjct: 57 EETYFVSEYHIVDTYFKLNQDNRHKLENYADDLLKEQEKIVQLPKYYAYKVFEKLSAGTG 116 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 ++ + D SM P Y G+++++ G + Sbjct: 117 YSY--FGDGNYDTVFYDEQLDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AIYAV 173 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G K + + L+SLN Y + + I +I+ Sbjct: 174 DWDGQTYIKKVYREEDG-LRLVSLNKHYADKFAPYDENPQIIGKIV 218 >gi|312945712|gb|ADR26539.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O83:H1 str. NRG 857C] Length = 212 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/211 (11%), Positives = 55/211 (26%), Gaps = 23/211 (10%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 ++ LA+ +G+ + + G + I +I A L Sbjct: 1 MSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIANALGVRTEWLSSGIGPMRN 54 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--- 138 ++ K P G E+ + Sbjct: 55 DGQQLGKPTAN---HPKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGR 111 Query: 139 ------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SM GD+L ++ ++ GD + K L + Sbjct: 112 KAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-K 170 Query: 193 IDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 + ++S N Y +E + + +++ Sbjct: 171 LLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 201 >gi|329767341|ref|ZP_08258866.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341] gi|328836030|gb|EGF85721.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341] Length = 218 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 21/211 (9%), Positives = 59/211 (27%), Gaps = 10/211 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ + +A G+ ++N ++ + +++ + T Sbjct: 5 NRLKSLRAKRKVSQTAVAEYLGVTRAAYNSWEKGKYIPNKKNLEELALYFNVETTYFESE 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEIRSPH 127 + + KK+ S + G + + Sbjct: 65 YEIVNKYLQLNDINKKKLLTIANELYISQLHKYQVHAKLSAGLGNFYYEDYEFDTVYFDK 124 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + Y D SM P Y G + ++ G + + K + Sbjct: 125 DIPY-----DIASWIDGDSMEPKYHNGHVALIKKTGYDFDG-LVYAVVYNEETYIKKVY- 177 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S+N Y + ++ + + Sbjct: 178 LEENTARLVSINDNYKDIIAPIEEVHIVGIV 208 >gi|307608926|emb|CBW98330.1| putative repressor [Legionella pneumophila 130b] Length = 227 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 17/225 (7%) Query: 1 MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58 MT K+I + I + LT L AG L T ++ R P E I Sbjct: 1 MTELNIKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGV-----RTPGPEEI 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + A + + L+ L K + P TG ++ Sbjct: 56 KSLARALDVSPAYLMCLSDELQFKEAKNPSQ-----LIPLLDYRQACEATLHTGA-ESSG 109 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRT 177 I + + T K D SM+P R D+L++ ++ GD + + Sbjct: 110 DKVFISVSTSLQPELSTDAFALKITDDSMMPEIRINDVLVIEPSVLPEPGDFVAVKINGK 169 Query: 178 GDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + + +L++LN +P V +++ I ++ Sbjct: 170 PETIICQYKKLSYTSSEFELLTLNDNWPNIKVSDDINVKIIGVLV 214 >gi|91200019|emb|CAJ73061.1| similar to transcriptional repressor [Candidatus Kuenenia stuttgartiensis] Length = 213 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 24/227 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ E + + + LAR + +F K+ E + + Sbjct: 1 MYNIKFSEVTERLKEVLNTK--SEDDLARSLEITAQAFLSFKKQNEIPS------ELLVR 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +I L+ ++ +G N W Sbjct: 53 FCLLNQVSIDWLIKGEQEKTSDYVSIPIYNAKIFSEEKAKEPEHAAGFMAFKNDWLMSEF 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + + +D SM P + GD++I++ V D L + G Sbjct: 113 ----------GANKAKLYLFHVKDDSMEPTLKNGDVVIVDKKNNVLDRDGLYLLRTEGAA 162 Query: 181 -VAKVLISRRGRSIDLMSLNCCYPVDT-----VEMSDIEWIARILWA 221 K + G S+ L+ N Y +E DI + R++W+ Sbjct: 163 AFIKRVQRLPGGSLHLLCDNATYKPIEAKTAQIENGDIVIVGRVVWS 209 >gi|54296142|ref|YP_122511.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris] gi|53749927|emb|CAH11312.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris] Length = 227 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 17/225 (7%) Query: 1 MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58 MT K+I + I + LT L AG L T ++ R P E I Sbjct: 1 MTELNIKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGV-----RTPGPEEI 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + A + + L+ L K ++ L +G +G+K Sbjct: 56 KSLARALDVSPAYLMCLSDELQFKEAKNPSQLIPLLDYRQACEASLHTGAESSGDKV--- 112 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRT 177 I + + T K D SM+P R D+L++ ++ GD + + Sbjct: 113 ---FISVSTSLQPELSTDAFALKITDDSMMPEIRINDVLVIEPSVLPEPGDFVAVKINGK 169 Query: 178 GDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + + +L++LN +P V +++ I ++ Sbjct: 170 PETIICQYKKLSYTSSEFELLTLNDNWPNIKVSDDINVKIIGVLV 214 >gi|307708176|ref|ZP_07644643.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615622|gb|EFN94828.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 228 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 58/218 (26%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69 E + + LT +A + G+ +++ +R E + + E+I K+ I Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVFQLENILKVPKGYFTQI 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122 + + EK L + + + Sbjct: 65 EIVRLYHSLSKQGQEKVVLYARNLSQEEQAHKVTAMPERLYEYRVYERMSAGIGASVYDD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 QNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 184 KRVYREENG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220 >gi|301348345|ref|ZP_07229086.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB056] gi|301597512|ref|ZP_07242520.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB059] Length = 267 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 66/248 (26%), Gaps = 31/248 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF- 59 M S + E I + L+ S A GL P + +K K+ I E + Sbjct: 20 MKVMS--TMVERIQEALKAKKLSWSKAATMIGLTPQAPSKWKKGQIGKETLDKLAELLEV 77 Query: 60 ---------KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS------GGFF 104 K TN + + +D + + Sbjct: 78 DAGWLLNGKKKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDV 137 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGD 155 F G ++ + K + SM GD Sbjct: 138 VEASFSCGTG-ESIEFHFDVINGKQPFPPSFFKQKNVHPDCMRIIKAKGDSMADKIDDGD 196 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DI 212 ++ ++ + ++ G+ + K + G + L SLN Y V + Sbjct: 197 LVGIDISQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNF 256 Query: 213 EWIARILW 220 + + R W Sbjct: 257 KVMGRQFW 264 >gi|229815366|ref|ZP_04445701.1| hypothetical protein COLINT_02412 [Collinsella intestinalis DSM 13280] gi|229809146|gb|EEP44913.1| hypothetical protein COLINT_02412 [Collinsella intestinalis DSM 13280] Length = 220 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 26/219 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIE-GRNRWPSTESIFKI 61 ++I++ I + PS +A GL P++ + E G R Sbjct: 17 QQQIYDFIRSYQKEKGYPPSVREMAAAVGLSSPSTVHAHLSALEEHGLIRR--------- 67 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 AT ++ + S + E P + N ++ VP Sbjct: 68 -DATKPRALEVFNSDGSSYKPEESTASSARGTVKLPLVGRVAAGMPILAEQNIEDSFTVP 126 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + + SM+ GD +I+ G+ ++ G Sbjct: 127 TEI-------ATDSSSFVLEVHGDSMINAGIFNGDYIIVREQKSAMNGEIVVAMID-GSA 178 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + L N + + +++ Sbjct: 179 TVKTFYKER-GRVRLQPENDAMEPIY--ADNPTILGKVV 214 >gi|327478520|sp|P61612|LEXA_MYCPA RecName: Full=LexA repressor Length = 232 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 22/223 (9%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 S + ++ I I PS + GL TS + +E + Sbjct: 21 PSLTERQRTILNVIRSSVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERK------GY 74 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + +D + T +P F P + + Sbjct: 75 LRRDPNRPRAVDVRGVDDDVAAPATEVAGSDALPEPTFVPVLGRIAAGGPILAEEAVEDV 134 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 +P K SM GD +++ + D + Sbjct: 135 FPLPRELVG-------DGTLFLLKVVGDSMVEAAICDGDWVVVRQQHVADNADIVAAMID 187 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K G + LM N + +D + +++ Sbjct: 188 -GEATVKTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 226 >gi|239917261|ref|YP_002956819.1| SOS-response transcriptional repressor, LexA [Micrococcus luteus NCTC 2665] gi|281414261|ref|ZP_06246003.1| SOS-response transcriptional repressor, LexA [Micrococcus luteus NCTC 2665] gi|239838468|gb|ACS30265.1| SOS-response transcriptional repressor, LexA [Micrococcus luteus NCTC 2665] Length = 238 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 57/223 (25%), Gaps = 17/223 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES- 57 ++I + I H PS + AGL S + +R G R P Sbjct: 18 QRRIVQTIRDAIADHGYPPSMREIGDAAGLASLSSVTHQLGRLERHGYI--RRDPGRPRA 75 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +L + + + + S G G Sbjct: 76 LEVLLDVDGTPLGEAASPAAAPSSQVSTIAAWHT--GTDEADSVPVPWVGRIAAGGPVLA 133 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 E + + + SM+ GD +++ GD + Sbjct: 134 EQQVEDVMAIPRRLTGEGELFMLRVTGDSMVDAAICDGDWVVVRRQETAENGDIVAALLD 193 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R L+ N Y + + + R++ Sbjct: 194 -DEATVKTFRRR-DGHTWLLPQNTAYEPILGDHA--TVMGRVV 232 >gi|22537417|ref|NP_688268.1| repressor protein [Streptococcus agalactiae 2603V/R] gi|77406937|ref|ZP_00783958.1| repressor protein, putative [Streptococcus agalactiae H36B] gi|22534293|gb|AAN00141.1|AE014250_4 repressor protein, putative [Streptococcus agalactiae 2603V/R] gi|77174457|gb|EAO77305.1| repressor protein, putative [Streptococcus agalactiae H36B] Length = 230 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 63/224 (28%), Gaps = 20/224 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + + S LA K ++ +S+ + + + + + +L Sbjct: 4 GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKT--KPNQSNLKQLAILLDVPETYF 61 Query: 70 CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN- 116 + + + + + + + P + G Sbjct: 62 ESEYKIVNTYLQLSLQNQEKVEKYAEELLQTQKVHEKIVPLFAVEVLSEIQLSAGPGEGL 121 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 Y D SM P+Y+ G++ ++ S + G + Sbjct: 122 YDEFETETVYSEDEYT--GFDIATWISGNSMEPVYKDGEVALIRSTGFDHDG-AVYALNW 178 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G + K L ++S+N + +I + +I+ Sbjct: 179 NGSLYIKKLYREEDG-FRMVSINPDVAERFIPFEDEIRIVGKIV 221 >gi|299531647|ref|ZP_07045052.1| putative phage repressor [Comamonas testosteroni S44] gi|298720363|gb|EFI61315.1| putative phage repressor [Comamonas testosteroni S44] Length = 208 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 29/210 (13%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL--------- 72 ++ +AR AG+ ++ + K +G + T K+ AA+ + + Sbjct: 1 MSVGEIARIAGVTSSAVTQWK----DGPTKSLKTAPATKLAAASGFSAMWIATGTGPEKG 56 Query: 73 -LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + T + P++ +G P G+ + V E + Sbjct: 57 VHADFDENVKPTPPGMRAYPVISKIQAGLVKEIVCPYEP-GDGF-AVEFGEDDASDW--- 111 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR--- 188 + + SMLP +R GD ++++ + GD + + + K R Sbjct: 112 -----AFFFEIEGDSMLPEFRPGDRVLIDPEVSPRPGDFVAARNTRQEATFKKYRVRGID 166 Query: 189 --RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +L+ LN YPV + + I Sbjct: 167 EAGQEIFELVPLNDDYPVMRSDEHHLVVIG 196 >gi|262040838|ref|ZP_06014065.1| repressor protein cI [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041821|gb|EEW42865.1| repressor protein cI [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 327 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 83/228 (36%), Gaps = 29/228 (12%) Query: 14 DRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 DR+ R LT LA++AG+ + +K++ + ++ ++FKI +A Sbjct: 100 DRLISRRELLGLTQEALAKRAGVTRVAISKAELGLT----KNFNSNTLFKISSALGCEPE 155 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGS----------GGFFDSGVFPTGN----KWN 116 L + + + +++ P+ + + G N Sbjct: 156 WLSTGKGTQEKLPKTPQQQKPVSDASWVNNVAETVQPQRRFSYPKLNWVQAGQFAQCGDN 215 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL 172 ++ YA + + + + SM + +G ++++ + ++ Sbjct: 216 YNMYDIENWIYSVKYAGE-RGFWLEVKGDSMTSHTGITFPEGMSILIDPEKEPYPNCYVI 274 Query: 173 IKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + R+ D+ K ++ G L LN YP+ ++ + E I ++ Sbjct: 275 AQKRSSKDVTFKKYVTDMGSGY-LKPLNPQYPMIPLD-DECEIIGVVV 320 >gi|227358478|ref|ZP_03842804.1| LexA family repressor/S24 family protease [Proteus mirabilis ATCC 29906] gi|227161280|gb|EEI46351.1| LexA family repressor/S24 family protease [Proteus mirabilis ATCC 29906] Length = 227 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 66/216 (30%), Gaps = 20/216 (9%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + + +T LA + + + R PS I ILA + Sbjct: 20 KSLMKEKGITYDDLAERFSVSKGAVGHWMTG-----KREPSLHDIAGILAFVGVNNAVIN 74 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + + Y + S F + + + V S Sbjct: 75 SDGSISIEKEDINHQPPIYQYPLFTKVQAGAFSTEFNSYTQKDAV------SWIPTAKKA 128 Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + SM P + +G +++++ +V GD + + + K LI Sbjct: 129 SERAFWLEVEGQSMTAPPGGKPSFPEGMLILVDPEEEVEFGDFCVARLLNDEFTFKRLIR 188 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G L LN + + + + I +++ SQ Sbjct: 189 DGGIEY-LEPLNPRFDLIPINGN-CTIIGKVI-KSQ 221 >gi|148270783|ref|YP_001245243.1| SOS-response transcriptional repressor, LexA [Thermotoga petrophila RKU-1] gi|166224654|sp|A5IN94|LEXA_THEP1 RecName: Full=LexA repressor gi|147736327|gb|ABQ47667.1| SOS-response transcriptional repressor, LexA [Thermotoga petrophila RKU-1] Length = 197 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 38/224 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + I+ E++ PS +AR+ + P R Sbjct: 1 MKDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + P + Sbjct: 43 -------LLHLIALEKKGYIERKNGKPRALRVSKSIRNKIPLIGEIRAGEKREAVEYLED 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + +PE K + SM GD++++ GD ++ Sbjct: 96 YIEIPESFLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVVAMV 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K +RG +++L N + ++ + +++ Sbjct: 150 D-GEVTLKKFY-QRGDTVELRPANREMSSMFFKAEKVKILGKVV 191 >gi|54293108|ref|YP_125523.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens] gi|53752940|emb|CAH14376.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens] Length = 234 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 73/218 (33%), Gaps = 12/218 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+I + I + LT L AG L T ++ R P E I + A Sbjct: 18 KEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGV-----RTPGPEEIKSLAEAL 72 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + L+ L KK + L + + + Sbjct: 73 DVSPAYLMCLSDEAQVKVVKKTSHLIPLLDHHQACQARLHVNTIRVQGTCGDAALISVSA 132 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKV 184 + + K D SM+P R GD+LI++ +I+ GD ++ P + + Sbjct: 133 ALLPELSDE--AFALKMTDESMMPEIRVGDVLIVDPSIEPAPGDFVVVKVPSISNAIVCK 190 Query: 185 LISR--RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 +L++ N +P TV D E I IL Sbjct: 191 YRKLSYTSPEFELLTANDNWPNITVTADIDAEIIGSIL 228 >gi|24371557|ref|NP_720299.1| C2 [Enterobacteria phage ST64T] gi|24250784|gb|AAL15497.1| C2 [Salmonella phage ST64T] Length = 234 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 58/214 (27%), Gaps = 18/214 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ LT LA G + R PS E I I+ L Sbjct: 24 KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 78 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130 D + P + F GN V + EI Sbjct: 79 SDGMVDYPDSSLSNVSSPRPHTE---IRRFPLISWVSAGNWCEAVEPYQLREIEVWPETT 135 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 + + SM +G ++++ AI+ G ++ + K Sbjct: 136 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKY 195 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G+ L LN Y + + + I ++ Sbjct: 196 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 227 >gi|319650122|ref|ZP_08004271.1| hypothetical protein HMPREF1013_00876 [Bacillus sp. 2_A_57_CT2] gi|317398303|gb|EFV78992.1| hypothetical protein HMPREF1013_00876 [Bacillus sp. 2_A_57_CT2] Length = 211 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 65/210 (30%), Gaps = 22/210 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN-ETI 69 + I + ++ T + LA+ L + + +P + I + + Sbjct: 13 KNIKKNLKKMGKTQTDLAKDLNLPEMTVSNWVNAKT-----YPRVDKIQMMADYFGLQYR 67 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + + + ++P+L G + G ++ + + Sbjct: 68 SDLTEDKPDNIYPATSELVKVPILGNIACGEPIYVAENF--VGYRYESADMLPS------ 119 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISR 188 + + + SM P G ++++ +V G+ ++ + K + + Sbjct: 120 -----GKTYYLEAKGNSMEPTIPNGSLVLIREQSEVENGEIAAVLVNGDTEATLKRVKKQ 174 Query: 189 RGRSIDLMSLNCCYPVDTVEMS-DIEWIAR 217 + LM N Y V S I + Sbjct: 175 -NGVVILMPDNPNYEPIVVSKSYPARIIGK 203 >gi|281413089|ref|YP_003347168.1| transcriptional repressor, LexA family [Thermotoga naphthophila RKU-10] gi|281374192|gb|ADA67754.1| transcriptional repressor, LexA family [Thermotoga naphthophila RKU-10] Length = 197 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 38/224 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + I+ E++ PS +AR+ + P R Sbjct: 1 MKDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + P + Sbjct: 43 -------LLHLIALEKKGYIERKNGKPRALRVSKSIRNKIPLIGEIRAGEKREAIEYLED 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + +PE K + SM GD++++ GD ++ Sbjct: 96 YIEIPESFLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVVAMV 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K +RG +++L N + ++ + +++ Sbjct: 150 D-GEVTLKKFY-QRGDTVELRPANREMSSMFFKAEKVKILGKVV 191 >gi|226306263|ref|YP_002766223.1| LexA repressor [Rhodococcus erythropolis PR4] gi|226185380|dbj|BAH33484.1| LexA repressor [Rhodococcus erythropolis PR4] Length = 242 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +++ E I PS + GL TS ++ + +G R Sbjct: 29 QRRVLEVIRDSVTERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDPNRPRAVD 88 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + +E S +P F P + + +P Sbjct: 89 VRGLDEVAADTAIASVSKHSGEYNSADPLPEPAFVPILGRIAAGGPILAEEAVEDVFPLP 148 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Q K SM+ GD +++ GD + G+ Sbjct: 149 RELVG-------QGSLFMLKVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID-GEA 200 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + LM N + ++ + +++ Sbjct: 201 TVKTFKR-TKKEVWLMPHNELFEPI--PGNNAVILGKVV 236 >gi|225174630|ref|ZP_03728628.1| SOS-response transcriptional repressor, LexA [Dethiobacter alkaliphilus AHT 1] gi|225169757|gb|EEG78553.1| SOS-response transcriptional repressor, LexA [Dethiobacter alkaliphilus AHT 1] Length = 204 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 32/224 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I + I R + N PS + + GL +S + Sbjct: 1 MDDLTPRQMQILDYIRREVKAKNYPPSVREIGQAVGLSSSSTVHAH-------------- 46 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K+ + + + +P + P + N Sbjct: 47 -LAKL-ESKGYIRRDPTKPRALELIDDDPSPTVVPDVVSAPVVGHVTAGEPILAEQNIEE 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 +P++ Q + + SM+ GD++I+ + G+ ++ Sbjct: 105 YFPLPKMMVH-------QDNVFLLRVRGDSMINAGIMDGDLVIVRQQSTASNGEIIV-AM 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + I L N Y I I +++ Sbjct: 157 LEGEATVKRFYKEKD-HIRLQPENDLYEPLRSPH--ISIIGKVI 197 >gi|222100461|ref|YP_002535029.1| LexA repressor [Thermotoga neapolitana DSM 4359] gi|254809108|sp|B9K9N0|LEXA_THENN RecName: Full=LexA repressor gi|221572851|gb|ACM23663.1| LexA repressor [Thermotoga neapolitana DSM 4359] Length = 207 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 38/224 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + K+ + I+ E++ PS +AR+ + P R Sbjct: 1 MKDLTAKQRSVLIFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + P + Sbjct: 43 -------QLHLVALEKKGYIERKNGKPRAMRVTKSVKNRVPLIGEIRAGEKKEAIEYLED 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + VP + + + SM GD++++ GD + Sbjct: 96 YIEVPGSFLSSGY------EHFLLRVKGESMIEEHICDGDLVLIRRQDWAQNGDIV-AAM 148 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K +RG ++L N ++ + +++ Sbjct: 149 VEGEVTLKKFF-QRGEMVELRPANKEMSPMFFRADRVKILGKVV 191 >gi|322617498|gb|EFY14397.1| hypothetical protein SEEM971_01424 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322659292|gb|EFY55539.1| hypothetical protein SEEM19N_01238 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665752|gb|EFY61935.1| hypothetical protein SEEM801_09901 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670010|gb|EFY66151.1| hypothetical protein SEEM507_14680 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673997|gb|EFY70094.1| hypothetical protein SEEM877_09059 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|323193639|gb|EFZ78844.1| hypothetical protein SEEM581_01330 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323203568|gb|EFZ88591.1| hypothetical protein SEEM460_02152 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323214059|gb|EFZ98823.1| hypothetical protein SEEM6152_13764 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218424|gb|EGA03134.1| hypothetical protein SEEM0077_16041 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219751|gb|EGA04232.1| hypothetical protein SEEM0047_08474 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323232418|gb|EGA16521.1| hypothetical protein SEEM0052_09866 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323250152|gb|EGA34046.1| hypothetical protein SEEM9199_06791 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253937|gb|EGA37762.1| hypothetical protein SEEM8282_07229 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323262865|gb|EGA46416.1| hypothetical protein SEEM8284_09304 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264240|gb|EGA47747.1| hypothetical protein SEEM8285_16873 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268725|gb|EGA52188.1| hypothetical protein SEEM8287_12411 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 220 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 58/214 (27%), Gaps = 18/214 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ LT LA G + R PS E I I+ L Sbjct: 10 KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130 D + P + F GN + + EI Sbjct: 65 SDGMVDYPDSNLNNVSSPRPHTE---IRRFPLISWVSAGNWCEAIEPYQLREIEVWPETT 121 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 + + SM +G ++++ AI+ G ++ + K Sbjct: 122 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKY 181 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G+ L LN Y + + + I ++ Sbjct: 182 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 213 >gi|227549109|ref|ZP_03979158.1| LexA repressor [Corynebacterium lipophiloflavum DSM 44291] gi|227078806|gb|EEI16769.1| LexA repressor [Corynebacterium lipophiloflavum DSM 44291] Length = 229 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 24/227 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53 M+ S ++I E I PS + AGL TS + +E + R P Sbjct: 13 MSVLSDRQRRILEVIQDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELERKGFLRRDP 72 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + ++ + P S + N Sbjct: 73 NKPRAVDLRHLP-----DSQKSSRKTKPKAAPTPEDASQPRYVPVVGQIAAGSPILAEEN 127 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 N +P+ + + SM GD +++ S G+ + Sbjct: 128 VDNYFPLPQELLG-------DGELYMLRVVGESMRDAGILDGDWVVVRSQPVAEEGEFVA 180 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + L+ N + + + E + R++ Sbjct: 181 ALLD-GEATVKEFHKDTTG-VWLLPHNDAFSPI--KGDEAEIMGRVV 223 >gi|218885456|ref|YP_002434777.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756410|gb|ACL07309.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 261 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 40/237 (16%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA------------------ 64 T LAR G++ ++ ++K + ++ + Sbjct: 20 TQQALARVLGVNRSAITQAKNRDAIPQKWILRLSRVYGLAPDWLEYGRGTPRPAPLAQPL 79 Query: 65 ----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT--------- 111 + L P+ G V Sbjct: 80 AAAVHGAGNIPTQSATSHFNPAGSVPGRAATLRPAMPAPHHGDLPPAVHMVPKVRARLSA 139 Query: 112 -GNKWNTVGVPEIRSPHNGIYAI----QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 G + +P P + + SM P R GD ++++ A + Sbjct: 140 GGGSFEVQAMPVGGQPFAHAWLARKGTPSAMVLMDVVGDSMEPEIRDGDTVLVDRATEDL 199 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILW 220 ++ ++ K ++ + L+S N Y V ++E I R++W Sbjct: 200 RFGQVYAVGLEDAVLVKRVMRTPDG-LALVSDNPAYSPIRVRGDELEQFRVIGRVVW 255 >gi|146277319|ref|YP_001167478.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025] gi|145555560|gb|ABP70173.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025] Length = 263 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 19/226 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + +D + P +A K+G+ F R + R P E+ +I A Sbjct: 41 HEIVQSRLDEL----GENPFSMAAKSGVSYDKFRNVLR--NDARRADPKVETAREICNAL 94 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + + + T + + Sbjct: 95 GLEFYIGAPRDTAPVHRVDLDGTDFAPIPVHRVELAAGCGAEN-HTEDLVGHLAFRRSWL 153 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDR---------LLIKP 175 G+ A + + SM P GD+L+++ + + G R + Sbjct: 154 QRIGVSA--SSAVLARAAGDSMAPTIHDGDMLLIDRSRAEAPRGPRGPKDTRPAPIFAIL 211 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 G K + G ++ L+S N + + ++ + I R++W Sbjct: 212 DDGLARVKRIELVPGGTLALLSDNPVFGPEFRQIGSVSIIGRVMWW 257 >gi|291541906|emb|CBL15016.1| SOS-response transcriptional repressor, LexA [Ruminococcus bromii L2-63] Length = 196 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 46/191 (24%), Gaps = 13/191 (6%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + G R PS + +I T + + +E + Sbjct: 7 SQQKIFDYLKECA-GEGRVPS---VREICEETGLSSTSTVHHHLKALEEKGLISREHGVN 62 Query: 94 YFPPSGSGGFFDSGVF----PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149 G V E P + + Q SM+ Sbjct: 63 RCIQINGMEKNTDVPVLGRVAAGYPILAVENIECYVPVPDSLKRGRELFALRVQGESMIN 122 Query: 150 L-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 DILI++ G+ ++ + K L N + V Sbjct: 123 AGIFPDDILIVHRTPVAENGEIVVAL-VGDEATVKRFYK-ENGHFRLQPENDNFEPIIV- 179 Query: 209 MSDIEWIARIL 219 ++ + +++ Sbjct: 180 -DEVALLGKVI 189 >gi|254975526|ref|ZP_05271998.1| SOS regulatory protein [Clostridium difficile QCD-66c26] gi|255092914|ref|ZP_05322392.1| SOS regulatory protein [Clostridium difficile CIP 107932] gi|255314655|ref|ZP_05356238.1| SOS regulatory protein [Clostridium difficile QCD-76w55] gi|255517329|ref|ZP_05385005.1| SOS regulatory protein [Clostridium difficile QCD-97b34] gi|255650435|ref|ZP_05397337.1| SOS regulatory protein [Clostridium difficile QCD-37x79] gi|306520412|ref|ZP_07406759.1| SOS regulatory protein [Clostridium difficile QCD-32g58] Length = 211 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 53/221 (23%), Gaps = 26/221 (11%) Query: 3 SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + K+ I E I P+ + GL TS S + Sbjct: 4 DLTEKQVLILEFIKSQITLKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 51 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K+ + + + ++ P + N + Sbjct: 52 EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 110 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + + + + SM+ D ++++ ++ Sbjct: 111 PFPASLVKG-------SNNFVLRVKGESMINAGILDEDYVVVDKKNTALNSQIVVALING 163 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K G I L N + S++E + + Sbjct: 164 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 203 >gi|77919337|ref|YP_357152.1| LexA repressor [Pelobacter carbinolicus DSM 2380] gi|123729446|sp|Q3A3S5|LEXA_PELCD RecName: Full=LexA repressor gi|77545420|gb|ABA88982.1| SOS-response transcriptional repressor, LexA [Pelobacter carbinolicus DSM 2380] Length = 202 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 57/225 (25%), Gaps = 38/225 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M+ + K++++ I R + +AR G + S Sbjct: 1 MSPLTPKQKQVFDYIARHIGEQGFAPSQQEIARAFG-------------------FRSLG 41 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ L + + L +G G Sbjct: 42 TVRNYLVRLEREGLLERNW----------NARRGLQLRTASERGMKLPLAGTVAAGKPIE 91 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKP 175 + +P++ + + SM+ GD +++ G ++ Sbjct: 92 AIEIPDVI-EVPPTMVGSGEHFVLRVAGDSMIGDGIIDGDYVVVRKQATAEHGQTVVALL 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + K L R I+L N V + + ++ Sbjct: 151 D-NEATVKRLHRR-NDRIELHPANPSMQPIVVTDPDNFRIEGVVV 193 >gi|331265721|ref|YP_004325351.1| transcriptional regulator, putative [Streptococcus oralis Uo5] gi|326682393|emb|CBZ00010.1| transcriptional regulator, putative [Streptococcus oralis Uo5] Length = 228 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69 E + + LT +A G+ +++ +R E + + E+I K+ I Sbjct: 5 EKLKARRKELKLTQKEIAEGLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYFTQI 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122 + + +K L + + + Sbjct: 65 EIVRLYNSLSKQGKDKVVLYARNLAQEEQTQKVTTMPERLYEYRVYERMSAGIGASVYDD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 QNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220 >gi|259416048|ref|ZP_05739968.1| prophage transcriptional regulator [Silicibacter sp. TrichCH4B] gi|259347487|gb|EEW59264.1| prophage transcriptional regulator [Silicibacter sp. TrichCH4B] Length = 217 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 54/199 (27%), Gaps = 5/199 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++ + G+ + R +E + + + Sbjct: 3 IPDRIRELMSSKSMNIKEFSETTGVKYRTIQNYLSGE-----RAVGSEFLAAVSERMGVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +L S E + ++ R Sbjct: 58 ASWILTGQGSMMFPNECIDVAQADFVQVARYEVEASAGNGSEVASEDAAQSYAFNRKWLG 117 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P GD+++++ A ++ +G++ K + Sbjct: 118 KRGLKPDTLSVISVRGDSMEPDLNDGDLVLIDLANTDLSDGKIYAVQYSGNLFVKRIQYV 177 Query: 189 RGRSIDLMSLNCCYPVDTV 207 G +I L+S N Y + Sbjct: 178 PGDTIRLVSRNAQYAPIEI 196 >gi|76798009|ref|ZP_00780267.1| phage repressor protein [Streptococcus agalactiae 18RS21] gi|76586632|gb|EAO63132.1| phage repressor protein [Streptococcus agalactiae 18RS21] gi|323127145|gb|ADX24442.1| repressor protein, putative [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 230 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 62/224 (27%), Gaps = 20/224 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + + S LA K ++ +S+ + + + + + +L Sbjct: 4 GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKT--KPNQSNLKQLAILLDVPETYF 61 Query: 70 CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN- 116 + + + + + + + P + G Sbjct: 62 ESEYKIVNTYLQLSLQNQEKVEKYAEELLQTQKVHEKIVPLFAVEVLSEIQLSAGPGEGL 121 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 Y D SM P+Y+ G++ ++ S G + Sbjct: 122 YDEFETETVYSEDEYT--GFDIATWISGNSMEPVYKDGEVALIRSTGFDYDG-AVYALNW 178 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G + K L ++S+N + +I + +I+ Sbjct: 179 NGSLYIKKLYREEDG-FRMVSINPDVAERFIPFEDEIRIVGKIV 221 >gi|218289525|ref|ZP_03493753.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218240393|gb|EED07575.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 223 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 62/206 (30%), Gaps = 4/206 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + ++ + NLT + LA +G+ ++ + GR + + + + L E Sbjct: 3 QFGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQR-GRPKPDTLKKLASALKVPYE 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSP 126 + + T + P+ G G + + Sbjct: 62 DLLLHAGVLNEQISRTSESRDLKPVDPSWYKRQVPIPVLGSIRAGTPVEMLALNSSEFVL 121 Query: 127 HNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + SM+ GD++I+ + D ++ + K + Sbjct: 122 VDSDLLGNHEGFALEVVGDSMIGDYIFPGDLVIVKYTSNFSPQDICVVAINGEEATLKRV 181 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD 211 + I L N + +D Sbjct: 182 KCQGDICI-LSPSNPAMEPMVYKATD 206 >gi|213158017|ref|YP_002320068.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB0057] gi|213057177|gb|ACJ42079.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB0057] Length = 248 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 66/248 (26%), Gaps = 31/248 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF- 59 M S + E I + L+ S A GL P + +K K+ I E + Sbjct: 1 MKVMS--TMVERIQEALKAKKLSWSKAATMIGLTPQAPSKWKKGQIGKETLDKLAELLEV 58 Query: 60 ---------KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS------GGFF 104 K TN + + +D + + Sbjct: 59 DAGWLLNGKKKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDV 118 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGD 155 F G ++ + K + SM GD Sbjct: 119 VEASFSCGTG-ESIEFHFDVINGKQPFPPSFFKQKNVHPDCMRIIKAKGDSMADKIDDGD 177 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DI 212 ++ ++ + ++ G+ + K + G + L SLN Y V + Sbjct: 178 LVGIDISQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNF 237 Query: 213 EWIARILW 220 + + R W Sbjct: 238 KVMGRQFW 245 >gi|325453355|gb|ADZ13636.1| putative transcriptional regulator [Cronobacter phage ENT47670] Length = 229 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 77/229 (33%), Gaps = 20/229 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E I ++ + + +T S LA + D + ++ +R S I KI A Sbjct: 2 KIGEKIRQIRKANQMTLSELALRVESDVGNLSRLERGMQGY-----SDTLIQKIAEALGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---------WNTV 118 + +L + T + + G+ ++ Sbjct: 57 PVAELFSSNEAS-DTVDTYSVGSIIKKGRNDVYRIDVLDVSASAGDGAASKDVVEVIRSI 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 ++ ++ + SM GD++ ++ + V GD + + G Sbjct: 116 EYVPDQARVIFGNRPESSVKLINVRGDSMEGTIEPGDLIFVDVGVSVFDGDGIYVFSFNG 175 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWA-SQ 223 D+ K L + + I +S N Y T+ ++ R++ + SQ Sbjct: 176 DMFVKRLQKVKSQLIV-ISDNPRYREWTISEEEMHMFHVAGRVMLSQSQ 223 >gi|318075428|ref|ZP_07982760.1| LexA repressor [Streptomyces sp. SA3_actF] gi|333024024|ref|ZP_08452088.1| putative LexA repressor [Streptomyces sp. Tu6071] gi|332743876|gb|EGJ74317.1| putative LexA repressor [Streptomyces sp. Tu6071] Length = 182 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/198 (10%), Positives = 43/198 (21%), Gaps = 26/198 (13%) Query: 25 SGLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + + GL TS ++ +G R Sbjct: 2 REIGQAVGLSSTSSVAHQLMALERKGFLR------------RDPHRPRAYEVRGSDQPSP 49 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 P + P + + + +P + K Sbjct: 50 QPADTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLPRQLVG-------DGELFVLKV 102 Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM GD + + GD + G+ K + L+ N Sbjct: 103 VGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEATVKRFKR-EDGHVWLLPHNAA 160 Query: 202 YPVDTVEMSDIEWIARIL 219 Y + + +++ Sbjct: 161 YQPI--PGDEATILGKVV 176 >gi|255252724|ref|YP_003090259.1| cI major repressor protein [Salmonella phage c341] gi|223697697|gb|ACN18321.1| cI major repressor protein [Salmonella phage g341c] Length = 224 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 69/229 (30%), Gaps = 23/229 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + ID++ L +A G+ + + R PS + I Sbjct: 6 MKMNWYDIAKQRIDQL----GLNQDKVAEHLGVTKGAVSHWLNG-----RRNPSIQEIGA 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I T + E E++ F P + Sbjct: 57 IFQYLGVT--DVRFNADGTFSVGESTEQKPVKPQFEYPFFSHVQAGMFTPEFRTFTERDA 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174 S + + SM P + +G +++++ + V+ GD + + Sbjct: 115 ECWISTTKKA---SDSSFWLEVEGHSMTAPAGSRPSFPEGMLILVDPEVPVDPGDFCIAR 171 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K LI G+ L LN +P+ + +++ ASQ Sbjct: 172 LCGDEFTFKKLIKDSGQVF-LQPLNPQFPIMPCN-EQCRVVGKVV-ASQ 217 >gi|255006786|ref|ZP_05145387.2| repressor-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] Length = 238 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 66/237 (27%), Gaps = 33/237 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN-------------------- 50 + + ++ ++ S L+R+ G+ S + E + Sbjct: 6 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNVNEAWLMGF 65 Query: 51 -----RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 R I I + + + ++ + + + + + Sbjct: 66 DISKNRKIENNDIASIYSKLTPPRQKNVLNYANEQLDEQNTKGDNIVDINSYKQDRIAVN 125 Query: 106 SG-VFPTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 G + + A I D K SM P+++ G+I+ + Sbjct: 126 VNGCVSAGVGE---RLHGETLFTEMVKAPIPPHDLALKVNGDSMEPMFKDGEIIFVEKTH 182 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G + + K + + L+SLN Y + + +++ Sbjct: 183 NIKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKEYRDLHFYRNESVRLVGKVI 237 >gi|15924988|ref|NP_372522.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|156980315|ref|YP_001442574.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|282919844|ref|ZP_06327576.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427] gi|14247771|dbj|BAB58160.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu50] gi|156722450|dbj|BAF78867.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu3] gi|282316482|gb|EFB46859.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427] Length = 242 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 66/237 (27%), Gaps = 33/237 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN-------------------- 50 + + ++ ++ S L+R+ G+ S + E + Sbjct: 10 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNVNEAWLMGF 69 Query: 51 -----RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 R I I + + + ++ + + + + + Sbjct: 70 DISKNRKIENNDIASIYSKLTPPRQKNVLNYANEQLDEQNTKGDNIVDINSYKQDRIAVN 129 Query: 106 SG-VFPTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 G + + A I D K SM P+++ G+I+ + Sbjct: 130 VNGCVSAGVGE---RLHGETLFTEMVKAPIPPHDLALKVNGDSMEPMFKDGEIIFVEKTH 186 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G + + K + + L+SLN Y + + +++ Sbjct: 187 NIKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKEYRDLHFYRNESVRLVGKVI 241 >gi|224369285|ref|YP_002603449.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223692002|gb|ACN15285.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 216 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 62/213 (29%), Gaps = 14/213 (6%) Query: 13 IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I R+ E + + + LA G++ + ++R +RW I K+ Sbjct: 9 IARILEVTGIRSQTELADALGINRSGITHARRKNEIP-DRW-----IVKLYRKFGLNPVW 62 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + E + + + + G Sbjct: 63 IETGAGRVFLNVETSQDIEFKTIPKVKARLSAGSGSFETLSDVTDYLSFQSRWLTRKGS- 121 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + SM P R GD ++++ + + I+ K + Sbjct: 122 --ANAMVAMEVFGNSMEPELRAGDTVLIDQSQTEILAGAIYALGIEDTILVKRIEKHPN- 178 Query: 192 SIDLMSLNCCYPVDTVEMSDIE---WIARILWA 221 + L S N Y + + ++E I +++W+ Sbjct: 179 KLVLTSENRDYQPIFLSLDEVEKVRIIGKVVWS 211 >gi|296445564|ref|ZP_06887520.1| putative phage repressor [Methylosinus trichosporium OB3b] gi|296256969|gb|EFH04040.1| putative phage repressor [Methylosinus trichosporium OB3b] Length = 230 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 15/219 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E + L R++G+ +++++ + E S E + +I + Sbjct: 15 LARRLAQAVELAGGSARVL-RESGVKASTYSRYIKEQSEA-----SAEKLGRIAEVAGVS 68 Query: 69 ICQLLDLPF----SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + L+ + P S + P Sbjct: 69 LDWLVLDRGAPVFEQEGEPPPLPAGPDMAMIPHSHVRPRVAEPADSRSALVEKLPFPRAL 128 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 G+ A + + SM P G +++++ + GD + + G+ + Sbjct: 129 LRRLGLGA--GEVEFVRAVGDSMEPTIDDGALVLIDRTRKEIAGDAIYLVTLDGEARLER 186 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILW 220 + SI L+S N Y + V D+E R W Sbjct: 187 VRRNIDGSILLISDNRRYDPEHVRRQDVERLAVHGRACW 225 >gi|295397998|ref|ZP_06808054.1| repressor LexA [Aerococcus viridans ATCC 11563] gi|294973756|gb|EFG49527.1| repressor LexA [Aerococcus viridans ATCC 11563] Length = 203 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 57/224 (25%), Gaps = 43/224 (19%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR--NRWPSTE 56 H +I + I + P+ + L TS ++ ++ G R + + E Sbjct: 5 HLQILKCIYSNIQSQGFPPTVREICEAVNLSSTSTVHGHLSQLEKQGYLLRNATKPRAME 64 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K L + + + + Sbjct: 65 ITDKGLELLGVSSQGIPMIGTVTAGQPIT------------------------AVEEIED 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 +P + K + SM GD +I+ GD ++ Sbjct: 101 YFPIPPTLKNQSDSL------FMLKIRGDSMIEAGILDGDFVIVRQESSAKNGDIVIAMT 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K I L N + D++ + R++ Sbjct: 155 DEGEATCKRFFK-EDGYIRLQPENHSLEPIILP--DVQILGRVI 195 >gi|283476394|emb|CAY54130.1| LexA repressor protein [Lactobacillus helveticus CNRZ32] Length = 208 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 29/221 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +I I + P+ + L TS +E + + Sbjct: 6 SDTKQLEILRYIYDTVDHRGFPPTVREICAAVKLSSTSTVHGHLARLERKGLLIKDATKP 65 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L T+E +L K K IP++ +G + Sbjct: 66 RALEITDEGKKELGI-----------KPKRIPVVGVVAAGHPI------LAVQDIDEYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + K SM+ GD +I+ N G+ ++ Sbjct: 109 LPPDLKNDA------GELFMLKIHGESMINAGILNGDNVIVKKQNTANNGEIVVAMTDEN 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + ++ + +++ Sbjct: 163 EATVKRFYKEKD-HYRLQPENDTMAPIILP--EVTILGKVV 200 >gi|133873996|gb|ABO40689.1| prophage repressor [Enterobacteria phage HK542] Length = 237 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLPQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + KIL + ++ ++ + + + ++ + F Sbjct: 66 --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G+ V + S ++ T P + G +++++ V GD Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230 >gi|294650866|ref|ZP_06728213.1| LexA family repressor [Acinetobacter haemolyticus ATCC 19194] gi|292823284|gb|EFF82140.1| LexA family repressor [Acinetobacter haemolyticus ATCC 19194] Length = 224 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 27/226 (11%) Query: 1 MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M S H++I + +D NL + LAR S K P+ E++ Sbjct: 1 MFVMSLHERIKQKLD----EKNLKAADLARATKRSAVSAKKWLDGVSV-----PTAENLK 51 Query: 60 KILAATNETICQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I T + +G F + Sbjct: 52 TIAKFLGVTDDWLLYGGKEQQTIDNNVSNKPARLAPVLSWVQAGTFTNVQAVDMSQVDEW 111 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRLLIK 174 + +P+ K Q S P + +GD ++++ + GD ++++ Sbjct: 112 LPLPDECI----------NCFYLKVQGISNQPDFLEGDYILVDPDVYYSDMQSGDMIVVR 161 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + D K L+ S + +LN + + + + + ++ +++ Sbjct: 162 -KFEDATFKKLVIETDGSRYMQALNPNFQPNIIPLDEHCHFVGQVV 206 >gi|15675391|ref|NP_269565.1| putative repressor [Streptococcus phage 370.2] gi|19746441|ref|NP_607577.1| repressor [Streptococcus pyogenes MGAS8232] gi|21910679|ref|NP_664947.1| putative cI-like repressor - phage associated [Streptococcus pyogenes MGAS315] gi|28876313|ref|NP_795491.1| putative cI-like repressor [Streptococcus pyogenes phage 315.3] gi|28895631|ref|NP_801981.1| repressor (phage associated) [Streptococcus pyogenes SSI-1] gi|13622576|gb|AAK34286.1| putative repressor - phage associated [Streptococcus phage 370.2] gi|19748643|gb|AAL98076.1| putative repressor [Streptococcus pyogenes MGAS8232] gi|21904881|gb|AAM79750.1| putative cI-like repressor - phage-associated [Streptococcus pyogenes phage 315.3] gi|28810880|dbj|BAC63814.1| putative repressor (phage associated) [Streptococcus pyogenes SSI-1] Length = 251 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 37/247 (14%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ + I ++ E N+T + L+ G+ T+ +K ++ + + + + +I T Sbjct: 2 EQLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKD--LKKLAEIFNVT 59 Query: 66 -----------------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 +++ + + ++K Sbjct: 60 SDYLLGLTDSKLGKITIQNEQPEIVSIYNQLEQPRQEKVLNFANEQLEEQNKTVSIFDKK 119 Query: 109 FPTGNKWNTVGVPEIRSPHNGIY---------------AIQTQDTRHKTQDTSMLPLYRK 153 + T V + + G Y DT K SM PL + Sbjct: 120 SEETEDYITDYVEGLVAAGLGAYQEDNLHMKVKLRSDDVPDEYDTIAKVAGDSMEPLIQD 179 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDI 212 D+L + + QV+ D + G K L + L SLN Y + DI Sbjct: 180 NDLLFIKVSSQVDMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNKSYEEIYLSKDDDI 238 Query: 213 EWIARIL 219 I ++ Sbjct: 239 RTIGEVV 245 >gi|322375904|ref|ZP_08050415.1| putative repressor protein [Streptococcus sp. C300] gi|321279172|gb|EFX56214.1| putative repressor protein [Streptococcus sp. C300] Length = 228 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 58/218 (26%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69 E + + LT +A + G+ +++ +R E + + E+I K+ I Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYFTQI 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122 + + +K L + + + Sbjct: 65 EIVRLYNSLSKQGKDKVVLYARNLAQEEQTQKVATMPERLYEYRVYERMSAGIGASVYDD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 RNFDTVYFNEELAHDFASWVAGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220 >gi|313889078|ref|ZP_07822736.1| repressor LexA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844951|gb|EFR32354.1| repressor LexA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 219 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 12/211 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + +T L++ G+ T+ P + I KI N + Sbjct: 13 KNLKELLSKKGVTQLELSKYLGVSNTTVYNYVNGFN-----MPRMDKIDKICEFFNISRS 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L++ + + + + G G E Sbjct: 68 ALIESNEPNSMQYTLDISQFENIIPIKNSKTHIPLIGTIAAGRPILADEHIEEYIDLKQK 127 Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 D + + SM+ R GDI+ + V+ G+ + K + Sbjct: 128 I---NADFALRVKGDSMINANIRDGDIVFIRKQSDVDDGEIAAVLID-DSATLKRVFKI- 182 Query: 190 GRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G + L + N Y ++ S ++ + + + Sbjct: 183 GDIVQLRAENSNYAPINLDESNNVLILGKAV 213 >gi|313114406|ref|ZP_07799934.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255] gi|310623277|gb|EFQ06704.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255] Length = 205 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 72/224 (32%), Gaps = 30/224 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59 M+ S + + L+ LA++ G +S K ++ + + Sbjct: 1 MSELS-----TRLHLRRKELGLSQEELAQRMGYRSKSSITKLEKGIND-----LPQSKVE 50 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++ AA T LL L + + + S + G + N +G Sbjct: 51 ELAAALETTPAYLLGLDTPCPPPGFEPLPAMTQVPLIGSIACGTPIT---AEQNIERYIG 107 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 VP D SM P GDI+ + +V G+ ++ G+ Sbjct: 108 VPAAWRA----------DFALTCHGDSMSPTICDGDIVCIRCQPEVEQGEIAAVRI-GGE 156 Query: 180 IVAKVLISRRGRSIDLMSLNCCY-PVDTV---EMSDIEWIARIL 219 K + G ++ L++ N P ++ ++ R + Sbjct: 157 ATLKHFHRQ-GDAVMLLADNAAVCPPMIFTGLQLEELHIEGRAV 199 >gi|151221463|ref|YP_001332285.1| LexA repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|172048876|sp|A6QGP1|LEXA_STAAE RecName: Full=LexA repressor gi|150374263|dbj|BAF67523.1| DNA damage-inducible LexA repressor [Staphylococcus aureus subsp. aureus str. Newman] Length = 207 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 54/225 (24%), Gaps = 30/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGRNRWPST 55 M + +I+ I ++ + PS + GL + + + Sbjct: 1 MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSFTVHGH-------------- 46 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + ++ + P + N Sbjct: 47 --LSRLEEKGYIEGDPTKPRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPITAVENIE 104 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 +PE + + + SM GD +I+ S GD ++ Sbjct: 105 EYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAM 159 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 160 TEEDEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VAVIGKVI 201 >gi|225390515|ref|ZP_03760239.1| hypothetical protein CLOSTASPAR_04270 [Clostridium asparagiforme DSM 15981] gi|225043420|gb|EEG53666.1| hypothetical protein CLOSTASPAR_04270 [Clostridium asparagiforme DSM 15981] Length = 222 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 51/224 (22%), Gaps = 41/224 (18%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTE 56 ++++ + T + GL TS N +R G R P T Sbjct: 25 KQSEVYDYVKAAMREKGYCPTVREICLAVGLTSTSSVHAHLNTLERRGYIRRNPLKPRTI 84 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + L P + N + Sbjct: 85 ELVE------------------------SAAIQERDLLRIPIVGTVAAGMPLLADQNIDD 120 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 V P + + SM+ GD +I+ GD ++ Sbjct: 121 YVSFPAGALHRG----CGGSVFMLRVKGDSMINAGIYHGDKIIVEQCDTAENGDIVVAL- 175 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V +E +++ Sbjct: 176 VEDSATVKRFFK-ENGHYRLQPENDAMQPIIV--DQVEIQGKVI 216 >gi|307243866|ref|ZP_07525991.1| repressor LexA [Peptostreptococcus stomatis DSM 17678] gi|306492688|gb|EFM64716.1| repressor LexA [Peptostreptococcus stomatis DSM 17678] Length = 211 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 37/226 (16%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPS 54 + K+ + + + PS + + + TS N+ ++ + PS Sbjct: 5 LTEKELSVLNFLKYHIKDKGYPPSVREICKNLDIKSTSTVFGILNRLEKNKYIRK--DPS 62 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +IL N + D + P+ N Sbjct: 63 KTRAIEILGNDNGSNNYNFDPEIINLPLVGSIAAGSPI----------------LAQENI 106 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ-VNCGDRLL 172 + +G+P Y K + SM+ + D +I+++A + G ++ Sbjct: 107 EDYIGLPS-------AYIKGKDCFMLKIKGDSMVEVGIMDKDYIIVDAADTRADNGKIVV 159 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L + I L+ N Y E ++ + + Sbjct: 160 ALINGESATVKTLEKK-DGKIWLIPQNSAYEPMIFEPDQVKVMGTV 204 >gi|327409424|ref|YP_004301566.1| gp32 [Brochothrix phage BL3] gi|296245500|gb|ADH03113.1| gp32 [Brochothrix phage BL3] Length = 228 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 61/224 (27%), Gaps = 18/224 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + LT + K G+ ++ K + IE R + K L + I + Sbjct: 5 LKERRLEKKLTLEEVGEKVGVGKSTVRKWENGMIENMGRD-KIVLLSKALDISPLEILGI 63 Query: 73 LDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 D + K S T P Sbjct: 64 EDELAPSSIETIYNQLNEQRQTKVYNYASRQLEEQNSNVTSIDKNKKVYVLGKTAANPTE 123 Query: 124 RSPHNGIY-------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 S + +Y + D Q SM PL G I+ +V G+ ++ Sbjct: 124 VSYGDAVYDETIDTNVPRNADCALVIQGDSMEPLLHDGSIVFYKQQPEVENGEIAIVDID 183 Query: 177 TGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + L SLN Y + + I +++ Sbjct: 184 GNGVTCKKVYFNYDDNIVLLKSLNEKYDDRELSPERVRIIGKVV 227 >gi|168765271|ref|ZP_02790278.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|168798579|ref|ZP_02823586.1| repressor protein CI [Escherichia coli O157:H7 str. EC508] gi|217327029|ref|ZP_03443112.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588] gi|189364926|gb|EDU83342.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|189378869|gb|EDU97285.1| repressor protein CI [Escherichia coli O157:H7 str. EC508] gi|217319396|gb|EEC27821.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588] gi|315274298|gb|ADU03706.1| repressor protein CI [Enterobacteria phage VT2phi_272] gi|326340128|gb|EGD63932.1| repressor protein CI [Escherichia coli O157:H7 str. 1125] Length = 237 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 75/234 (32%), Gaps = 21/234 (8%) Query: 2 TSFSHKKIWEAIDRMA-------ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + +++ +A R+ + L+ LA + G+ ++ N+ + Sbjct: 6 KPLTPEQLEDA-KRLKSIFNAKKKELGLSQESLAYELGVTQSAVNQLMAGINAINASHAA 64 Query: 55 TESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + KIL + + ++ + + L D + Sbjct: 65 --QLAKILNVKVGDFSPSLAKSIAEMALAIEEPLTRVPAYEYPLLSCVQAGAFSMDDISY 122 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + + S + ++ P + +G +++++ ++ GD Sbjct: 123 TAKDAIKWISTTTKASDRSFWLEVKGHSMTAPQGGK---PSFPEGMLILVDPEREIEDGD 179 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K I G++ L LN + + + +++ +++ SQ Sbjct: 180 FCVARMNGDEFTFKRFIRESGKAY-LEPLNPRFDMIECN-ENCQFVGKVI-KSQ 230 >gi|212709629|ref|ZP_03317757.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] gi|212687733|gb|EEB47261.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] Length = 236 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 18/221 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + L+ L G+ ++ + + E+ K+ A Sbjct: 16 RLKAIFEAKKKELGLSQESLGDAIGMGQSAVAQLLNGVN-----AINVENAVKLAEALEV 70 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIR 124 ++ L + R E ++ + G + Sbjct: 71 SVDDFSPLLAKEIRRMFNSVSEQKIV--SNGDRYMYPLLTKVQAGTFTENSNSYTEKDAY 128 Query: 125 SPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + SM P + +G +++++ VN GD + K Sbjct: 129 AWIPTAKKASDSAFWLEVEGHSMTAPQGGRPSFPEGMLILIDPKEPVNVGDFCIAKLNGN 188 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K LI G++ L LN + + + + E I +++ Sbjct: 189 EFTFKKLIRESGQTF-LEPLNPKFDLIPIN-ENCEIIGKVI 227 >gi|312143584|ref|YP_003995030.1| transcriptional repressor, LexA family [Halanaerobium sp. 'sapolanicus'] gi|311904235|gb|ADQ14676.1| transcriptional repressor, LexA family [Halanaerobium sp. 'sapolanicus'] Length = 208 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53 M S K I I + PS + + GL P S + + + + R P Sbjct: 1 MEELSKRQKSILNFIMDEIKTKGYPPSVREIGKAVGLKSPASVHSHLKTLEKLKYLRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 S +++ + K + P + + N Sbjct: 61 SKPRAIEVIYN------------------KNDENKSNKEMIEIPLVGKVTAGAPILAEEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + +P + SM+ GD +I ++ Sbjct: 103 IEDYFPLPLGYIKVGN-----NDVFMLRVSGDSMINAGIHDGDYVIAEKQSYAENAQIVI 157 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N Y D++ + +++ Sbjct: 158 ALI-EDEATVKRFYKDNNN-IRLQPENPAYEPII--SKDVKVLGKVI 200 >gi|317058133|ref|ZP_07922618.1| predicted protein [Fusobacterium sp. 3_1_5R] gi|313683809|gb|EFS20644.1| predicted protein [Fusobacterium sp. 3_1_5R] Length = 345 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 9/210 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + +N + L +K N +S K + + Sbjct: 103 YLKNFMSENNYDITFLCKKIKTSEILLNNYLSGIET--PNNDFIDSFIKTFKISRIEA-E 159 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + + + G ++ +P Sbjct: 160 HIKAYIDYDNNFKDPSTISNIDFELSYELIEVPVYSSVSAGYGYSPESLPIKYVSIPK-- 217 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR--TGDIVAKVLISRR 189 I + SM GDI+I+ ++VN GD + GD V K L + Sbjct: 218 -IDGDIIGIRVSGDSMEKTIYDGDIVIVKKDVEVNIGDIGVFLLNKEFGDGVVKRLAKK- 275 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L S N Y ++ S++ +++ Sbjct: 276 NGVFVLESDNPYYKPIEIKSSEVITCGKVI 305 Score = 40.5 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S +I + ++ E NLT L+ KA + + + R + E + K L Sbjct: 2 SLMEIRIL--LKKLRESRNLTIKELSEKAKVGNGTIGDIESGRNT--PRKTTLEKLAKAL 57 Query: 63 A 63 Sbjct: 58 N 58 >gi|257451561|ref|ZP_05616860.1| transcriptional regulator, XRE family protein [Fusobacterium sp. 3_1_5R] Length = 342 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 9/210 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + +N + L +K N +S K + + Sbjct: 100 YLKNFMSENNYDITFLCKKIKTSEILLNNYLSGIET--PNNDFIDSFIKTFKISRIEA-E 156 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + + + G ++ +P Sbjct: 157 HIKAYIDYDNNFKDPSTISNIDFELSYELIEVPVYSSVSAGYGYSPESLPIKYVSIPK-- 214 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR--TGDIVAKVLISRR 189 I + SM GDI+I+ ++VN GD + GD V K L + Sbjct: 215 -IDGDIIGIRVSGDSMEKTIYDGDIVIVKKDVEVNIGDIGVFLLNKEFGDGVVKRLAKK- 272 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L S N Y ++ S++ +++ Sbjct: 273 NGVFVLESDNPYYKPIEIKSSEVITCGKVI 302 Score = 40.1 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +I + ++ E NLT L+ KA + + + R + E + K L Sbjct: 2 EIRILLKKLRESRNLTIKELSEKAKVGNGTIGDIESGRNT--PRKTTLEKLAKALN 55 >gi|41408934|ref|NP_961770.1| LexA repressor [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397293|gb|AAS05153.1| LexA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 217 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 22/223 (9%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 S + ++ I I PS + GL TS + +E + Sbjct: 6 PSLTERQRTILNVIRSSVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERK------GY 59 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + +D + T +P F P + + Sbjct: 60 LRRDPNRPRAVDVRGVDDDVAAPATEVAGSDALPEPTFVPVLGRIAAGGPILAEEAVEDV 119 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 +P K SM GD +++ + D + Sbjct: 120 FPLPRELVG-------DGTLFLLKVVGDSMVEAAICDGDWVVVRQQHVADNADIVAAMID 172 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K G + LM N + +D + +++ Sbjct: 173 -GEATVKTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 211 >gi|116670029|ref|YP_830962.1| LexA repressor [Arthrobacter sp. FB24] gi|116610138|gb|ABK02862.1| SOS-response transcriptional repressor, LexA [Arthrobacter sp. FB24] Length = 288 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 55/220 (25%), Gaps = 10/220 (4%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL---DPTSFNKSKRFGIEGRNRWPSTESIFK 60 KKI E I R + PS + GL + S+ + R P + Sbjct: 67 QKKILETIQRSVNDNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRPRAME 126 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L + + G G V Sbjct: 127 VLMPLTLDEGTAKISGVEKPARLRTIGGLAVSELATATDTAMVPLVGRIAAGGPILADQV 186 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E P + K SM+ GD +++ GD + + Sbjct: 187 VEDVMPLPRQLVGHGELFMLKVTGDSMIDAAICDGDWVVVRRQSDAVNGDIVAALLD-DE 245 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K +R L+ N Y + + + +++ Sbjct: 246 ATVKTF-RQRDGHTWLLPQNTQYEPILGDHA--NIMGKVV 282 >gi|154252141|ref|YP_001412965.1| putative phage repressor [Parvibaculum lavamentivorans DS-1] gi|154156091|gb|ABS63308.1| putative phage repressor [Parvibaculum lavamentivorans DS-1] Length = 239 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 73/232 (31%), Gaps = 20/232 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---WPSTESIFKILAAT 65 + + + + L+ +AR+ G+ T++ + S E T Sbjct: 3 VATRLGHIRKFLGLSQKDMARRFGVSGTTWQNYELENAAPNAHVLGRLSGEGFNINWVLT 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG---VFPTGNKW-----NT 117 + + + T + + + L S P Sbjct: 63 GMGEMRAGERKMMEKPTGFAELEPLELEGIAASRKHVLIPRYALRTLPREGGEAAMTMEE 122 Query: 118 VGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 V + + + A + D SM P + GDIL+ +++ G + Sbjct: 123 VSLLDTIAFRRDFIESDLKADPASLIAIEAADNSMSPTFGPGDILLADTSEPRLRGSGIY 182 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVE---MSDIEWIARILW 220 + G ++ K L + + S N YP + +E + ++ + R++W Sbjct: 183 VFASGGALLVKRLQVKLDGGFIVSSDNAELYPAEEIERTALERVKIVGRVIW 234 >gi|91787695|ref|YP_548647.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24 [Polaromonas sp. JS666] gi|91696920|gb|ABE43749.1| phage repressor protein, Serine peptidase, MEROPS family S24 [Polaromonas sp. JS666] Length = 207 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 62/209 (29%), Gaps = 19/209 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I L+ A AG+ + + ++ P + K+ ++ +L Sbjct: 7 IREKRRLLGLSVQQFADAAGVSRGAVQQWEKPDGTA----PKRANQPKVAELLGISVAEL 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + L P + + V V Sbjct: 63 VSGDSRMSPGLGIDVRAEIPLISEVHAGNYTAIDNFQP-RSGFEMVPVTVP--------- 112 Query: 133 IQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 ++ Q + SM+ + +G IL++ + GD +++ K L+ Sbjct: 113 VKRQTFALRVHGDSMVGITGDSFPEGSILVVEPELTAEPGDYVIVLNSKNQTTFKQLVKD 172 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 L LN YPV + ++I + R Sbjct: 173 GAD-YYLKPLNTRYPVKPLGSAEIIGVVR 200 >gi|146310442|ref|YP_001175516.1| putative phage repressor [Enterobacter sp. 638] gi|145317318|gb|ABP59465.1| putative phage repressor [Enterobacter sp. 638] Length = 240 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 11/220 (5%) Query: 11 EAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + ++ L + +A++ L P + +K R + + I+ ++ Sbjct: 17 QRLALACDKAGLPAHGRQAEIAKRMKLTPKAVSKWFNGEAI--PRRGKLQELAAIIGTSS 74 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + K+ + F S G ++ + Sbjct: 75 SHLLGDSAADGISEGHLLVKDDSYRVDIFDIQASAGQGVIVRDEFIETIKSIEYSTEEAR 134 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 SM + D + ++ +I GD + I D+ K L Sbjct: 135 AVFGGRPADHIKMIAVNGDSMSGTFEPRDQIFVDVSIDCFDGDGIYIFVLENDLYIKRLQ 194 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWASQ 223 + R + ++S N Y +E D + A++L SQ Sbjct: 195 KQH-RKLAVISDNKKYETWYIEDGDFSSLRICAKVL-VSQ 232 >gi|307711376|ref|ZP_07647794.1| peptidase S24-like family protein [Streptococcus mitis SK321] gi|307616794|gb|EFN95976.1| peptidase S24-like family protein [Streptococcus mitis SK321] Length = 228 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 59/218 (27%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69 E + + LT +A + G+ +++ +R E + + E+I K+ I Sbjct: 5 EKLKARRKELKLTQREIAEQLGISFQAYSAWERGVKEPSKEKVVQLENILKVPKGYFTQI 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122 + + EK L F + + + Sbjct: 65 EIVRLYHSLSKQGQEKVVLYARNLSQEEQAQKVTAMPERFYEYRVYERMSAGIGASVYDD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 QNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 184 KRVYREENG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220 >gi|262202154|ref|YP_003273362.1| LexA repressor [Gordonia bronchialis DSM 43247] gi|262085501|gb|ACY21469.1| LexA repressor [Gordonia bronchialis DSM 43247] Length = 233 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 52/214 (24%), Gaps = 28/214 (13%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + PS + GL TS + +E + Sbjct: 39 VLDVIRKSVRERGYPPSIREIGDAVGLTSTSSVAHQLRTLERK--------------GLL 84 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + +P F P + + +P Sbjct: 85 KRDHNRPRAVNVQESEPAPSAENLPTPTFVPVLGRIAAGGPILAEEAVEDVFPLPRELVG 144 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + SM+ GD +++ + GD + G+ K Sbjct: 145 -------DGSLFLLRVVGESMIDAAICDGDWVVVRQQNVADNGDIVAAMID-GEATVKTF 196 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + I LM N + D + +++ Sbjct: 197 KRK-DGHIWLMPHNEHFQPI--PGDDAAILGKVV 227 >gi|315611793|ref|ZP_07886715.1| hypothetical transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315316208|gb|EFU64238.1| hypothetical transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 228 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 58/218 (26%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69 E + + LT +A + G+ +++ +R E + + E+I K+ I Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLENILKVARGYFTQI 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122 + + +K L + + + Sbjct: 65 EIVRLYNSLSKQGKDKVVLYARNLAQEEQTQKVATMPERLYEYRVYERMSAGNGASVYDD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 QNFDTVYFNEELAHDFASWVAGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220 >gi|156935235|ref|YP_001439151.1| hypothetical protein ESA_03086 [Cronobacter sakazakii ATCC BAA-894] gi|156533489|gb|ABU78315.1| hypothetical protein ESA_03086 [Cronobacter sakazakii ATCC BAA-894] Length = 220 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 61/214 (28%), Gaps = 18/214 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ LT LA G + R PS E I I+ L Sbjct: 10 KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130 D + + P + F GN V + E+ Sbjct: 65 SDGMVDYPSDDLANVSNPRPHTEV---RRFPLISWVSAGNWCEAVEPYQLQEVEVWPETT 121 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVL 185 + + SM +G ++++ AI+ G ++ K + K Sbjct: 122 SHASERSFWLTVRGDSMTAPSGLSIPEGMQILVDPAIEATSGRLVVAKLDSENEATFKKY 181 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G+ L LN Y + ++ + I ++ Sbjct: 182 IVDAGQKY-LKPLNPSYHMIPIDGN-CRIIGVVI 213 >gi|87200717|ref|YP_497974.1| putative phage repressor [Novosphingobium aromaticivorans DSM 12444] gi|87136398|gb|ABD27140.1| putative phage repressor [Novosphingobium aromaticivorans DSM 12444] Length = 269 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 13/219 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I++ ++ + L LA+ G++ +K + + + E + Sbjct: 55 QIFQRLEAL----GLKQRELAQALGIEENKISKVRAGERQFK----GAELLAAYEWLDQR 106 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + ++ P+ + P V + Sbjct: 107 EAEAHMPRLSRVAAVGQQVIPATPVEGEVVQIQKLDLSLSMGPGTLIDGYVESELVSFDL 166 Query: 128 NGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVA 182 + A SM P + GD++++++ + ++ D + G Sbjct: 167 GFVRLFTRAASDHLRLVTGIGDSMEPTLKWGDLILIDTTDRMLSKQDGIYWINLYGAAGI 226 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 K L + R+I + S N VE D+ R +WA Sbjct: 227 KRLRAIGPRTILVKSDNPGVDDQEVEAEDLRIEGRAIWA 265 >gi|212702484|ref|ZP_03310612.1| hypothetical protein DESPIG_00501 [Desulfovibrio piger ATCC 29098] gi|212674145|gb|EEB34628.1| hypothetical protein DESPIG_00501 [Desulfovibrio piger ATCC 29098] Length = 233 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 66/237 (27%), Gaps = 25/237 (10%) Query: 1 MT-SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 MT S S I + + + E T LAR GL ++ +G E + Sbjct: 1 MTDSRSDPTIVQRLMQALEAD--TAVELARALGLP---VTDVEQALAKG---QVPDEWVR 52 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-----SGVFPTGNK 114 A T L + L G+ Sbjct: 53 ICAAETGCNADWLFFGRGPMRLPLVESGAMPACLMLEDVDDDVDMITVPLVVARLSAGSG 112 Query: 115 WNTV--GVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 V + + + + SM+P + D+++L+ Sbjct: 113 SLEVSNEQEGGYAFRSDFLHRKGNPRRMVLMRVSGDSMVPEIQDNDLVLLDQGQTEIVSG 172 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221 RL I K + G+ I L S N YP T++ I R+LW+ Sbjct: 173 RLYAIGFEDAIYIKRIDLLPGQ-IVLHSTNPAYPPVTLDLSGDCAEQFRVIGRVLWS 228 >gi|304395821|ref|ZP_07377703.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304356190|gb|EFM20555.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 232 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 21/218 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + NLT LA KAG++ + ++ + P+ ++ + A Sbjct: 20 GERIRLKRKELNLTQQALAEKAGVNRVTVTGWEKDDYQ-----PNGANLQALADALKCDP 74 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L+ + + ++ P G + Sbjct: 75 TWLVSGKGESISSPLLRPVQVSAKEVPLISWVQAGTWTATDPGLTRDE-----AIMWLYT 129 Query: 130 IYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQ---VNCGDRLLIKPRTG-DI 180 ++ + + + SM P + I+I+ I G ++ G + Sbjct: 130 TASVSDKAFALRVRGDSMTNPHGNPTIPEDSIVIVEPEIHDVAAINGKIVVAHIDGGSEA 189 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + L+ LN Y + + + + Sbjct: 190 TLKKFVEDFPHRY-LVPLNPNYKTIECDGN-CRIVGVV 225 >gi|302185497|ref|ZP_07262170.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae 642] Length = 243 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + ++ + G + + Sbjct: 65 GPKHPNDCANENTGGDTRVIIHQARNVSRGDVEIQIFMEAESTHGVGKTVLAEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P + GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231 >gi|297571235|ref|YP_003697009.1| transcriptional repressor, LexA family [Arcanobacterium haemolyticum DSM 20595] gi|296931582|gb|ADH92390.1| transcriptional repressor, LexA family [Arcanobacterium haemolyticum DSM 20595] Length = 262 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 10/217 (4%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESIFKILA 63 I + + + P+ + GL S K + + + P ++ Sbjct: 44 IVDTVRSLLASRGYPPTVREIGDSVGLKSPSSVKHQLDSLIQLGIFSHDPRRSRTLEVTP 103 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + S + + P + + G G E Sbjct: 104 LGMSLDTETGEYTRSSILHSLPSSASESSEFAPATATVSVPLVGRIAAGAPILADQHIED 163 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + SM+ GD +++ G+ + G+ Sbjct: 164 VFALPRQLTGSGELFMLQVSGDSMVDAAICDGDWVVVRRQPNAEQGEIVAAMID-GEATV 222 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL L+ N Y + + I RI+ Sbjct: 223 KVLSR-TDGHQWLLPRNPDYSPI--PADNAQIIGRIV 256 >gi|146306618|ref|YP_001187083.1| LexA repressor [Pseudomonas mendocina ymp] gi|166224641|sp|A4XSN5|LEXA_PSEMY RecName: Full=LexA repressor gi|145574819|gb|ABP84351.1| SOS-response transcriptional repressor, LexA [Pseudomonas mendocina ymp] Length = 204 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 32/216 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSP---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK----------GAIEMTPGASRGIRIPGFEPGAANEDEGLPVIGRVAAGAPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + + SM + GD+L +++ + G ++ + Sbjct: 96 AQQHVEESCQINPAFFHPKADYLLRVRGMSMKDIGIFDGDLLAVHTTREARNGQIVVARL 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ Sbjct: 156 D-DEVTVKRFKR-EGNKVWLIAENPEFAPIEVDLEQ 189 >gi|237704871|ref|ZP_04535352.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|226901237|gb|EEH87496.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|315288265|gb|EFU47664.1| peptidase S24-like domain protein [Escherichia coli MS 110-3] Length = 228 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 7/195 (3%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 S LAR+ +P+ ++ + + + + + I + N + L Sbjct: 23 ASELARRIEREPSYVSRMLYPEGKSGKKRIADDMMELIEKSFNLPRGWMDMLADG----- 77 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 K L F + GF +V + E RS IY+ K + Sbjct: 78 --KAGATDHLEFAGNVRAGFVPVIGEAVLGVDGSVDMIEFRSGWLSIYSGDKDAYGLKVK 135 Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 SM P + G+ +++ V+ GD + ++ + G + K++ R S+N + Sbjct: 136 GDSMWPRIQSGEYVVIEPNTPVHPGDEVFVRTKDGHNMIKIMNKTRDGDYQFSSINSDHR 195 Query: 204 VDTVEMSDIEWIARI 218 T+ + +++ + + Sbjct: 196 PITLPVEEVDKMHFV 210 >gi|49474223|ref|YP_032265.1| LexA repressor [Bartonella quintana str. Toulouse] gi|71658809|sp|Q6FZU5|LEXA_BARQU RecName: Full=LexA repressor gi|49239727|emb|CAF26107.1| SOS response regulator lexA protein [Bartonella quintana str. Toulouse] Length = 237 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 62/232 (26%), Gaps = 14/232 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55 M + ++ I + + PS K L+ TS + R R P+ Sbjct: 1 MLTCKQYELLLFIHNHMKEIGVPPSFDEMKIALELTSKSGIHRLITALEERGFIRRLPNR 60 Query: 56 ESI-------FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 KI + ++ ++ R K K + + G Sbjct: 61 ARAVEVVRLPEKITFNLSSARKISPNVIENNRRKISKNSKNLNNFDIEDKKNVTVPIMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G + + + + +D SM D +I+ Sbjct: 121 IAAGVPVSAIQQQTNTLCLPADMISLGEHYALEVKDDSMIEAGILDKDTIIVRRQNTATP 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + K SI L + N Y IE +++ Sbjct: 181 GEIIIALIDKEEATLKRYRRNGA-SIALEAANPHYETRIYRPERIEIQGKLI 231 >gi|323519078|gb|ADX93459.1| hypothetical protein ABTW07_3036 [Acinetobacter baumannii TCDC-AB0715] Length = 219 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 71/220 (32%), Gaps = 14/220 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + + +R NL+ GL + ++ + + PS + I Sbjct: 2 HNFVSDRFKSERKRLNLSQEGLGNLIEVSESTVKRWENGASI-----PSDKLILCAQHGF 56 Query: 66 NETICQ-LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + T ++ + E L+ + F + + + Sbjct: 57 DITYVLLGDKNVEETSKSDDLFCGEFALVNVYDVAVSAGDGAVCFGAAEPVSRLAFRKDW 116 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 +G+YA + SM P + L++N++ + + + + K Sbjct: 117 LSRHGLYA--KDLAIVYAKGDSMEPTIHDKEPLLVNTSDKELTDGFIYVVRNQENFWVKR 174 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221 + + + L+S N Y ++++ D+E I R W Sbjct: 175 VQRQFNE-LLLLSDNEKYLPMKLDLNEATDVEIIGR--WI 211 >gi|306836296|ref|ZP_07469277.1| repressor LexA [Corynebacterium accolens ATCC 49726] gi|304567816|gb|EFM43400.1| repressor LexA [Corynebacterium accolens ATCC 49726] Length = 236 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 54/219 (24%), Gaps = 13/219 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 ++I I PS + AGL TS + K+ +G R + Sbjct: 20 QRRILNVISDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 79 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + N + + G G Sbjct: 80 VRHLNTDNAEKKPGRKTKDVPDTSARGPEESAAVAYIPVVG-----RIAAGAPITAEENI 134 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + P + + SM GD +I+ S G+ + + Sbjct: 135 DTYFPMPDEVVGGGELYMLQVVGDSMQDAGILNGDWVIIRSQSVAEEGEFVAALLDGSEA 194 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N YP D E + +++ Sbjct: 195 TVKEFHRDSSG-VWLLPHNDAYPPI--NGDDAEIMGKVV 230 >gi|82777173|ref|YP_403522.1| repressor protein CI [Shigella dysenteriae Sd197] gi|309788320|ref|ZP_07682924.1| repressor protein CI [Shigella dysenteriae 1617] gi|81241321|gb|ABB62031.1| repressor protein CI [Shigella dysenteriae Sd197] gi|308923702|gb|EFP69205.1| repressor protein CI [Shigella dysenteriae 1617] Length = 237 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 75/234 (32%), Gaps = 21/234 (8%) Query: 2 TSFSHKKIWEAIDRMA-------ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + +++ +A R+ + L+ LA + G+ ++ ++ + Sbjct: 6 KPLTPEQLEDA-KRLKSIFNAKKKELGLSQESLAYELGVTQSAVSQLMAGINAINASHAA 64 Query: 55 TESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + KIL + + ++ + + L D + Sbjct: 65 --QLAKILNVKVGDFSPSLAKSIAEMALAIEEPLTRVPAYEYPLLSCVQAGAFSMDDISY 122 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + + S + ++ P + +G +++++ ++ GD Sbjct: 123 TAKDAIKWISTTTKASDRSFWLEVKGHSMTAPQGGK---PSFPEGMLILVDPEREIEDGD 179 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + + K I G++ L LN + + + +++ +++ SQ Sbjct: 180 FCVARMNGDEFTFKRFIRESGKAY-LEPLNPRFDMIECN-ENCQFVGKVI-KSQ 230 >gi|242373636|ref|ZP_04819210.1| LexA repressor [Staphylococcus epidermidis M23864:W1] gi|242348604|gb|EES40206.1| LexA repressor [Staphylococcus epidermidis M23864:W1] Length = 206 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 56/225 (24%), Gaps = 31/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + +I++ I + + PS + GL ++ + Sbjct: 1 MRELTKRQSEIYDYIKHIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + + + E + P + N Sbjct: 50 ------LEEKGYIRRDPTKPRAIEIVSEQLDEVNVEETIHVPVIGKVTAGMPITAVENIE 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAM 158 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 159 TEDEEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VIVIGKVI 200 >gi|51892874|ref|YP_075565.1| LexA repressor [Symbiobacterium thermophilum IAM 14863] gi|71658817|sp|Q67NM2|LEXA_SYMTH RecName: Full=LexA repressor gi|51856563|dbj|BAD40721.1| transcriptional repressor of the SOS regulon [Symbiobacterium thermophilum IAM 14863] Length = 205 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 36/220 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60 ++I + I PS + GL +S R +G R P+ + Sbjct: 9 QRQILQFIKDEIRTKGYPPSVREIGEAIGLSSSSTVHGHMTRLEEKGYIRRDPTKPRAIE 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L ++ ++ P + + + + Sbjct: 69 VLDGSH---------------------TQLKRTIAVPVVGRVTAGQPILAQESIEDHFPL 107 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P A +++ Q SM GD ++++ N GD ++ + Sbjct: 108 PADFVR-----ADESELFFLTVQGDSMIEAGILDGDYVLVHRQQHANNGDIVVALI-EDE 161 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V D + + +++ Sbjct: 162 ATVKRFFKEQD-HIRLQPENRFMDPIIVP--DCQILGKVV 198 >gi|1469215|emb|CAA63999.1| c2 [Enterobacteria phage L] Length = 220 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 58/214 (27%), Gaps = 18/214 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ LT LA G + R PS E I I+ L Sbjct: 10 KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130 D + P + F GN V + EI Sbjct: 65 SDGMVDYPDSSLSNVSSPRPHTE---IRRFPLISWVSAGNWCEAVEPYQLREIEVWPETT 121 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 + + SM +G ++++ AI+ G ++ + K Sbjct: 122 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKY 181 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G+ L LN Y + + + I ++ Sbjct: 182 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 213 >gi|187779612|ref|ZP_02996085.1| hypothetical protein CLOSPO_03208 [Clostridium sporogenes ATCC 15579] gi|187773237|gb|EDU37039.1| hypothetical protein CLOSPO_03208 [Clostridium sporogenes ATCC 15579] Length = 201 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 56/220 (25%), Gaps = 37/220 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFK 60 +++ I + PS + + GL TS KR EG + S+++ Sbjct: 8 KQNEVYNFIKLQIKEKGYPPSVREICKAVGLSSTSSVHFHLKRLEKEGLIKRDSSKTRA- 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + P + + N + + Sbjct: 67 ---------------------IEIVDPTSKKEVINVPIVGTITAGNPILAIENIEDVFPL 105 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + K SM GD+ I+ N GD ++ + Sbjct: 106 PIDYVKNT------KDLFMLKVSGESMIEAGILDGDLAIIEKTDSANNGDIVVALID-NE 158 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N + D + + R++ Sbjct: 159 ATLKRFFKES-SYIRLQPENKSMKPIIL--EDCKVLGRLV 195 >gi|228951623|ref|ZP_04113727.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808084|gb|EEM54599.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 241 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 10/222 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + I + I + + +++T S LA + G+ ++ + + + PS+ + K Sbjct: 15 MTDLQKQTIVKNIKKFLKENDMTQSDLASQIGIARSTLSDYMNYRAK-----PSSGVLEK 69 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL-YFPPSGSGGFFDSGVFPTGNKWNTVG 119 + T + + E ++ G G V Sbjct: 70 MATVFGVTKSDIDTTYKNSKVEIVDGELQLVQEKPTDNESKKEIPIIGKIAAGVPLEAVQ 129 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R + SM + G +L V G+ + Sbjct: 130 DIVDRIAPPYKTHNIDELFGLVVNGESMNKIVPNGHYAVLKKQPDVQNGEIAAVIVNGHY 189 Query: 180 IVAKVLISRRGRSI-DLMSLNCCYPVDTVEMS---DIEWIAR 217 K + I + S + + DI+ I + Sbjct: 190 ATLKKVYKFTDLMILEPCSHDESFKDQQYSQDNCEDIKIIGK 231 >gi|146278165|ref|YP_001168324.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025] gi|145556406|gb|ABP71019.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025] Length = 231 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 19/226 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + +D + P +A K+G+ F R + R P E+ +I A Sbjct: 9 HEIVQSRLDEL----GENPFSMAAKSGVSYDKFRNVLR--NDARRADPKVETAREICNAL 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + + + T + + Sbjct: 63 GLEFYIGAPRDTAPVHRVDLDGTDFAPIPVHRVELAAGCGAEN-HTEDLVGHLAFRRSWL 121 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDR---------LLIKP 175 G+ A + + SM P GD+L+++ + + G R + Sbjct: 122 QRIGVSA--SSAVLARAAGDSMAPTIHDGDMLLIDRSRAEAPRGPRGPKDTRPAPIFAIL 179 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 G K + G ++ L+S N + + ++ + I R++W Sbjct: 180 DDGLARVKRIELVPGGTLALLSDNPVFGPEFRQIGSVSIIGRVMWW 225 >gi|269795598|ref|YP_003315053.1| SOS-response transcriptional repressor, LexA [Sanguibacter keddieii DSM 10542] gi|269097783|gb|ACZ22219.1| SOS-response transcriptional repressor, LexA [Sanguibacter keddieii DSM 10542] Length = 258 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 54/220 (24%), Gaps = 13/220 (5%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I + PS + GL S K + +E + + + + Sbjct: 37 VLETIRESVDTRGYAPSMREIGEAVGLTSPSSVKHQLTTLERKGYLRRDPNRPRAMELVV 96 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------TGNKWNTVGV 120 Q R + + + P G V Sbjct: 97 PGPAQGAPTGELTSRPAGRALRSVSTQQTADVDLDSHPTPSFVPVVGRIAAGGPILAEQV 156 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E P + + SM+ GD +++ G+ + G+ Sbjct: 157 VEDVFPLPRQLVGDGELFLLRVTGESMVDAAICDGDWVVVRRQPVAENGEIVAAMID-GE 215 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + LM N + + + RI+ Sbjct: 216 ATVKTFKRV-DGHVWLMPHNDAFSPIL--GDEATILGRIV 252 >gi|229916139|ref|YP_002884785.1| SOS-response transcriptional repressor, LexA [Exiguobacterium sp. AT1b] gi|259494474|sp|C4L2T2|LEXA_EXISA RecName: Full=LexA repressor gi|229467568|gb|ACQ69340.1| SOS-response transcriptional repressor, LexA [Exiguobacterium sp. AT1b] Length = 206 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 57/226 (25%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M S ++I + I PS + GL ++ + R G R Sbjct: 1 MKKMSARQQQILDFIKDEVRAKGYPPSVREIGEAVGLASSSTVHGHLDRLEKRGLIRRDK 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ +E + + P + + N Sbjct: 61 TK-----------------PRAIEILTDDMPTMEEQESVMYVPVIGKVTAGTPITAIENV 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 +P + SM+ GD +++ + G+ ++ Sbjct: 104 EEHFPLPAHIVGSD-------NVYMLSVSGDSMINAGILDGDRVLVRQQSTADNGEIVVA 156 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + + L N + + + +++ Sbjct: 157 MTEEGEATVKRIYK-EASKVRLQPENDELEAMYFDN--VSILGKVI 199 >gi|330978032|gb|EGH77935.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 243 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + ++ + G + + Sbjct: 65 GPKHPNECANENTGGDTRIIIHQARNVSRGDVEIQIFMEAESTHGVGKTVLAEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P + GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231 >gi|66043890|ref|YP_233731.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] gi|63254597|gb|AAY35693.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] Length = 243 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + ++ + G + + Sbjct: 65 GPKHPNECANENTAGDTRVIIHQARNVSRGDVEIQIFMEAESTHGVGKTVL--AEALGQK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P + GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231 >gi|294791876|ref|ZP_06757024.1| repressor LexA [Veillonella sp. 6_1_27] gi|294457106|gb|EFG25468.1| repressor LexA [Veillonella sp. 6_1_27] Length = 223 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%) Query: 5 SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I E I D + + T + GL TS +S +E R P+ Sbjct: 11 KQRRILEFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNTLEKFGYIKRDPNKNRAI 70 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +L T +I + S + G G V Sbjct: 71 TVLEDTKPSISVAGNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + Q SM+ + +GD+LI+ N GD ++ + Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218 + K I L N + V+ IE I + Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219 >gi|94994722|ref|YP_602820.1| Cro/CI family transcriptional regulator [Streptococcus phage 10750.3] gi|94548230|gb|ABF38276.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10750.3] Length = 271 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 37/247 (14%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ + I ++ E N+T + L+ G+ T+ +K ++ + + + + +I T Sbjct: 22 EQLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKD--LKKLAEIFNVT 79 Query: 66 -----------------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 +++ + + ++K Sbjct: 80 SDYLLGLTDSKLGKITIQNEQPEIVSIYNQLEQPRQEKVLNFANEQLEEQNKTVSIFDKK 139 Query: 109 FPTGNKWNTVGVPEIRSPHNGIY---------------AIQTQDTRHKTQDTSMLPLYRK 153 + T V + + G Y DT K SM PL + Sbjct: 140 SEETEDYITDYVEGLVAAGLGAYQEDNLHMKVKLRSDDVPDEYDTIAKVAGDSMEPLIQD 199 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDI 212 D+L + + QV+ D + G K L + L SLN Y + DI Sbjct: 200 NDLLFIKVSSQVDMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNKSYEEIYLSKDDDI 258 Query: 213 EWIARIL 219 I ++ Sbjct: 259 RTIGEVV 265 >gi|312961762|ref|ZP_07776260.1| putative prophage repressor [Pseudomonas fluorescens WH6] gi|311284021|gb|EFQ62604.1| putative prophage repressor [Pseudomonas fluorescens WH6] Length = 211 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 20/218 (9%) Query: 10 WEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 W A+ + +T LA + G+ + R PS E + ++L A Sbjct: 4 WIALVKANMKDRKVTQGELAERLGMSQGGVGHWLN-----KRRVPSLEDMNRVLEALGLG 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +++ K + P + Sbjct: 59 YLEVVQQVRERADEAPALVKRYNPYFRYPVSDWDALCEVC-------DERPAYGDARFEL 111 Query: 129 GIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAK 183 Y + +M G +++++ A+ G ++ + + + Sbjct: 112 SDYHARGDAFWLPVTGDAMTAPTGLSIAAGMLILVDPALIAEPGKLVVAQWADSPQATFR 171 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 L+ G+ L+ LN YP + D + ++ A Sbjct: 172 QLLEESGQRY-LVPLNPTYPKQRFTV-DCRILGVVVQA 207 >gi|332855796|ref|ZP_08436047.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332870031|ref|ZP_08439007.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332727271|gb|EGJ58715.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332732531|gb|EGJ63782.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 213 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 72/208 (34%), Gaps = 18/208 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I ++ + L+ L G+ + ++ E ++ + E++ ++L T Sbjct: 2 ETIGLRIQKLRKEKKLSKVKLGDLVGVSDVTVGFWEKDVNE--PKYENLEALCQVLDTTI 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + ++ + + +P+L + +G+ S + P Sbjct: 60 DYLKYGVNNNEQSVKDLRPITRMLPVLDYVQAGNWTNVRSIQ--PHEIELWLPAPPEAGR 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDIVAK 183 Q TS P ++ GD++ ++ I V G+ ++ K Sbjct: 118 ---------NSFYMIVQGTSNTPHFKDGDLICIDPDIPLEYVQTGEMIVAMCD-DQATFK 167 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD 211 L+ L +LN + + + + + Sbjct: 168 ALVRENKNMY-LQALNGNFHPNIIPLKE 194 >gi|119962894|ref|YP_947368.1| LexA repressor [Arthrobacter aurescens TC1] gi|171704632|sp|A1R556|LEXA_ARTAT RecName: Full=LexA repressor gi|119949753|gb|ABM08664.1| LexA repressor [Arthrobacter aurescens TC1] Length = 247 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 58/220 (26%), Gaps = 12/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 KKI E I R + PS + GL +S ++ + G R + Sbjct: 28 QKKILETIQRSVNDNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLR--RDPKRPRA 85 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGV 120 + +P + TT + + + + G G Sbjct: 86 MEVLMPLTLDGGAIPGVEAPTTLRSAGGLAVTELASASDTAMVPLVGRIAAGGPILADQT 145 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E + K SM+ GD +++ GD + + Sbjct: 146 VEDVLALPRQLVGHGELFMLKVAGDSMIDAAICDGDWVVVRRQNDAINGDIVAALLD-DE 204 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K +R L+ N Y + +++ Sbjct: 205 ATVKTF-RQRDGHTWLLPQNTQYEPIL--GDQATIMGKVV 241 >gi|228475326|ref|ZP_04060049.1| repressor LexA [Staphylococcus hominis SK119] gi|314936506|ref|ZP_07843853.1| repressor LexA [Staphylococcus hominis subsp. hominis C80] gi|228270638|gb|EEK12057.1| repressor LexA [Staphylococcus hominis SK119] gi|313655125|gb|EFS18870.1| repressor LexA [Staphylococcus hominis subsp. hominis C80] Length = 206 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 56/225 (24%), Gaps = 31/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + +I++ I + + PS + GL ++ + Sbjct: 1 MRELTKRQSEIYDYIKHVVQIKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + + + + + P + N Sbjct: 50 ------LEEKGYIRRDPTKPRAIEIVSDQNNDMTREETIYVPVIGKVTAGVPITAVENIE 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EYFPLPEHLTSTHN-----SDVFILNVIGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 158 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 159 TEDDEATVKRFFKEKN-RYRLQPENSAMSPIYLDN--VTVIGKVI 200 >gi|221328664|ref|YP_002533506.1| Repressor [Salmonella phage epsilon34] gi|193244732|gb|ACF16671.1| Repressor [Salmonella phage epsilon34] Length = 212 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 19/216 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + ++ L +A G+ + + R PS + I I T + Sbjct: 3 KQRIDQLGLNQDKVAEHLGVTKGAVSHWLNG-----RRNPSIQEIGAIFQYLGVT--DVR 55 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 E E++ F P + S Sbjct: 56 FNADGTFSVGESTEQKPVKPQFEYPFFSHVQAGMFTPEFRTFTERDAECWISTTKKA--- 112 Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SM P + +G +++++ + V+ GD + + + K LI Sbjct: 113 SDSSFWLEVEGHSMTAPAGSRPSFPEGMLILVDPEVPVDPGDFCIARLCGDEFTFKKLIK 172 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN +P+ + +++ ASQ Sbjct: 173 DSGQVF-LQPLNPQFPIMPCN-EQCRVVGKVV-ASQ 205 >gi|227833301|ref|YP_002835008.1| LexA repressor [Corynebacterium aurimucosum ATCC 700975] gi|262184285|ref|ZP_06043706.1| LexA repressor [Corynebacterium aurimucosum ATCC 700975] gi|227454317|gb|ACP33070.1| LexA repressor [Corynebacterium aurimucosum ATCC 700975] Length = 240 Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 11/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 ++I E I PS + GL TS + +E + R P+ Sbjct: 20 QRRILEVIHDAVMLRGYPPSIREIGDATGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 79 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + G+ + + P + + G G+ Sbjct: 80 VRHFPGGE--DSKKPGRKTGQANKSPDLSTPDIPEDAATPNYIPVVGRIAAGSPITAEEN 137 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + P G + + SM GD +I+ S G+ + + Sbjct: 138 VDAYFPMPGEILGSGELYMLQVVGDSMQDAGILNGDWVIIRSQSVAEEGEFVAALLDGEE 197 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + E + +++ Sbjct: 198 ATVKEFHRDSSG-VWLLPHNDAYSPI--KGDEAEIMGKVV 234 >gi|313885235|ref|ZP_07818987.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619926|gb|EFR31363.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] Length = 228 Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 19/228 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FS + + R + L+ + LAR+ + +S+ + + + E + K+L Sbjct: 1 MFSGDQ----LKRRRQERQLSQADLARQLNIARSSYYNWETGKTQ--PNQANLEHLAKLL 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT----------G 112 T + Q L + ++ ++ + Sbjct: 55 LVTPDYFDQDYRLLHPYHQLQSARQDQVVDFTDQLLEEQKRAQAPKIAALFAYKVYEKLS 114 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + D SM PLY G + ++ G Sbjct: 115 AGTGYGYFEDRSYDTVFHTEKIDHDLASWVYGDSMEPLYLNGSVALIKDTGFDYDGGI-Y 173 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L+SLN Y + I +++ Sbjct: 174 AVDWDGQTYLKRVYR-EAEGLRLVSLNQKYQDKFAPYSEEPRIIGKLV 220 >gi|294793737|ref|ZP_06758874.1| repressor LexA [Veillonella sp. 3_1_44] gi|294455307|gb|EFG23679.1| repressor LexA [Veillonella sp. 3_1_44] Length = 223 Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%) Query: 5 SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I E I D + + T + GL TS +S +E R P+ Sbjct: 11 KQRRILEFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +L T +I + S + G G V Sbjct: 71 TVLEDTKPSISVTGNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + Q SM+ + +GD+LI+ N GD ++ + Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218 + K I L N + V+ IE I + Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219 >gi|320093996|ref|ZP_08025822.1| LexA repressor [Actinomyces sp. oral taxon 178 str. F0338] gi|319979077|gb|EFW10594.1| LexA repressor [Actinomyces sp. oral taxon 178 str. F0338] Length = 225 Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 14/222 (6%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58 SH++ I I+ R PS +A + GL P++ G E Sbjct: 6 LSHRQAEILRVINDKLTRDGFPPSVREIALRVGLASPSTIKHHLDSLEAGG----YLERH 61 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + A + T L + T + S SG G G+ Sbjct: 62 AGLPRALDLTDRARAVLGVGNPPTGAGVVTVEVPVGHADSDSGAVPLVGRIAAGSPITAE 121 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + + SM+ GD +++ + GD + Sbjct: 122 QYVEDVFALPTRLTGRGDLFMLEVSGQSMVDAGILDGDYVVVRAQADAQSGDFVAAMID- 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K G + L+ N Y + +++ Sbjct: 181 GEATVKEFSR-SGGHVWLLPHNEDYAPI--PGDGATVLGKVV 219 >gi|229544057|ref|ZP_04433116.1| SOS-response transcriptional repressor, LexA [Bacillus coagulans 36D1] gi|229325196|gb|EEN90872.1| SOS-response transcriptional repressor, LexA [Bacillus coagulans 36D1] Length = 206 Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 63/227 (27%), Gaps = 37/227 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53 M S + I + I + PS + + GL ++ + R +G R P Sbjct: 1 MAKLSKRQQAILDFIKHEVKTKGYPPSVREIGQAVGLASSSTVHGHLARLESKGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL E Q + G+ T N Sbjct: 61 TKPRAIEILDHDEEIPAQNVVNVPVVGKVTAGIPIT--------------------AVEN 100 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +PE P + + SM+ GD +I+ S N GD ++ Sbjct: 101 IEEYFPLPEHLVPS------DESVYMLEIEGDSMVDAGILNGDYVIVRSQQTANNGDIVV 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + ++ Sbjct: 155 AMTDENEATVKRFFKEKD-YFRLQPENQTMEPIILKN--VTILGVVI 198 >gi|227535713|ref|ZP_03965762.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186680|gb|EEI66747.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 257 Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 68/256 (26%), Gaps = 50/256 (19%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + ++ ++ LA K G+ ++ + ++ IE E + K+ A + Sbjct: 2 NVGERMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVP----IEVVAKVANALDI 57 Query: 68 TI--------------------------------CQLLDLPFSDGRTTEKKEKEIPLLYF 95 L E + Sbjct: 58 KPEVLMGLKADTVVDKIHDTVVQLHPERQQKVYTYAEKQLNEQQNPDNVVSLDEALVERN 117 Query: 96 PPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 G+ G + P D K SM P Y Sbjct: 118 LDEPEFNVEVDGIVAAGYGAFNDDRDEPMDTVKIPDSAIPSHYDYCFKVVGDSMHPTYDD 177 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---------YPV 204 G+ + + V G ++ K LI + + L SLN YP Sbjct: 178 GEFVFVQKTQDVTNGMIAVVDID-DMTFIKKLIFEQD-RLCLRSLNDDVDEETGERIYPD 235 Query: 205 DTVEMSD-IEWIARIL 219 + +D IE I +++ Sbjct: 236 FYADDTDNIEVIGKVV 251 >gi|288905287|ref|YP_003430509.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306831364|ref|ZP_07464524.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978272|ref|YP_004287988.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732013|emb|CBI13578.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304426600|gb|EFM29712.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178200|emb|CBZ48244.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 226 Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------- 55 FS +K + + E + + +A+ + S+ + + + + Sbjct: 1 MFSGEK----LKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSQLLGV 56 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNK 114 E + + L+ + + G Sbjct: 57 EETYFVSEYDIVDTYFKLNKDNRHKLENYADDLLKEQEKIVQLPKYYAYKVFEKLSAGTG 116 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 ++ + D SM P Y G+++++ G + Sbjct: 117 YSY--FGDGNYDTVFYDEQLDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AIYAV 173 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 174 DWDGQTYIKKVYREEDG-LRLVSLNKHYADKFAPYDENPRIIGKIV 218 >gi|330502554|ref|YP_004379423.1| LexA repressor [Pseudomonas mendocina NK-01] gi|328916840|gb|AEB57671.1| LexA repressor [Pseudomonas mendocina NK-01] Length = 204 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 61/223 (27%), Gaps = 34/223 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSP---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK----------GAIEMTPGASRGIRIPGFEAGAANEDEGLPVIGRVAAGAPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + + SM + GD+L +++ + G ++ + Sbjct: 96 AQQHVEESCQINPAFFQPKADYLLRVRGMSMKDIGIFDGDLLAVHTTREARNGQIVVARI 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216 ++ K G + L++ N + V++ D+ Sbjct: 156 D-DEVTVKRFKR-EGNKVWLIAENPEFAPIEVDLEHQDLVIEG 196 >gi|294670746|ref|ZP_06735608.1| hypothetical protein NEIELOOT_02455 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307534|gb|EFE48777.1| hypothetical protein NEIELOOT_02455 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 251 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 68/237 (28%), Gaps = 45/237 (18%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + S +A K G+ +K ++ P +++ KI + + L+ Sbjct: 16 STSEIADKIGMSYVGLSKVFS-----KDALPKADTLLKIHEVSGCDLKWLMTGEGVPFPK 70 Query: 83 TEKKEKEIPLLYFPPSGS----------------------------GGFFDSGVFPTGNK 114 L + + G+ Sbjct: 71 GAATGSNQELQEPVAGYNAKWNAKSIQTAPEVLDTLGNPVDLSEFVFIPRYNVKVAAGHG 130 Query: 115 WNTVGVPEIRSPHNGIYAI-------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 + + Y I + K SM + GD ++++ + Sbjct: 131 YAVEDEKPRFTMAFRKYWIRFYLHTDPKSLSVVKVAGDSMEGILFDGDNVLVDHSRN-QP 189 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILW 220 G+ L + +++ K + G + + S N Y + ++D +E I +++W Sbjct: 190 GNGLYVLRIGEELIVKRTQTLPGNYLLVSSANEAYQPFELNLADETSGVEIIGKVVW 246 >gi|294636132|ref|ZP_06714555.1| repressor protein [Edwardsiella tarda ATCC 23685] gi|291090557|gb|EFE23118.1| repressor protein [Edwardsiella tarda ATCC 23685] Length = 235 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 63/225 (28%), Gaps = 16/225 (7%) Query: 5 SHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + ++ + +A K + P + +K R + + K Sbjct: 6 KRDDFPTRLALACDKAGFPRYGRQADIAGKMKVTPKAVSKWFNGESA--PRGTKLDLLAK 63 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---T 117 + + L DG ++ + GV G Sbjct: 64 V---LGTSSAYLAGYSEEDGIVEMRQRQIGDSFRVDVLDVQASAGPGVMVDGQFIEKVRA 120 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + SM GD + ++ ++ GD + + Sbjct: 121 IEYTTEHARMLFGGRSEDSVKVITVKGDSMEGTINPGDEIFVDVSVNFFDGDGVYVFVYE 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + K L + + ++S N Y ++ D + +A++L Sbjct: 181 RCLHIKRLQMHKN-KLLVISDNKVYQPWDIDKEDEPKLYIMAKVL 224 >gi|255101060|ref|ZP_05330037.1| SOS regulatory protein [Clostridium difficile QCD-63q42] gi|255306924|ref|ZP_05351095.1| SOS regulatory protein [Clostridium difficile ATCC 43255] gi|328887636|emb|CAJ68806.2| Transcriptional regulator, LexA repressor [Clostridium difficile] Length = 211 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 53/221 (23%), Gaps = 26/221 (11%) Query: 3 SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + K+ I E I P+ + GL TS S + Sbjct: 4 DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 51 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K+ + + + ++ P + N + Sbjct: 52 EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 110 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + + + + SM+ D ++++ ++ Sbjct: 111 PFPASLVKG-------SNNFVLRVKGESMINAGILDEDYVVVDKKNTALNSQIVVALING 163 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K G I L N + S++E + + Sbjct: 164 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 203 >gi|229008343|ref|ZP_04165820.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228752911|gb|EEM02463.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] Length = 209 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 73/222 (32%), Gaps = 22/222 (9%) Query: 1 MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + K+I+ + + +R+ + + LA + T+ + + R + I Sbjct: 1 MDAQKMKEIFASNLKKYLDRNGINQTYLANSIHVPETTVSNWIKANTYPRP-----DKIQ 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L + S+ + ++P+L G + + G ++ T Sbjct: 56 LLADYFKINRSDLTEEKPSNLYEASIRPVKVPILGKIACGLPIYAEENF--EGFRYETSD 113 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTG 178 + + + + + SM P G +++ V G+ ++ Sbjct: 114 ILP-----------RGEVYYLEAKGNSMEPTIPNGSFVLIRKQDDVENGEIAAVLINGDT 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + K + + G + LM N Y + + I + + Sbjct: 163 EATLKRVKKQ-GDVVILMPDNSSYEPIVLTSNVPARIIGKAI 203 >gi|227522302|ref|ZP_03952351.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227090509|gb|EEI25821.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 235 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 29/234 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + E + A G+ T+ R ++ E+I KI Sbjct: 5 DYLKDLIEIKSGNVKAFADSIGMAYTTI----RSILDRGIMNAKMENIIKICDGLGIKPE 60 Query: 71 QLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L S T ++ + + + + + + +P R Sbjct: 61 DIVKLESSVVSDTNKIMLQLHPSRQEKVYNYASDQLDEQNNEKISSMFDHKPMIEIPAGR 120 Query: 125 SPHNGIYAIQTQ-------------------DTRHKTQDTSMLPLYRKGDILILNSAIQV 165 S G D SM PL +KG + ++ +V Sbjct: 121 STAAGSPINGEDQDTQLIHKMIAGEKVPAGADELITVDGDSMEPLLKKGSQVFIHYQPEV 180 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ R + K + ++ L S+N Y + ++ I +++ Sbjct: 181 EDGEIAIVHIRDIGVTCKKIYVNEDNTVTLRSINEAYDDMHFDCDEVNVIGKVI 234 >gi|254521991|ref|ZP_05134046.1| phage-related repressor protein [Stenotrophomonas sp. SKA14] gi|219719582|gb|EED38107.1| phage-related repressor protein [Stenotrophomonas sp. SKA14] Length = 297 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 18/227 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI---FK 60 S + + R +T + A G + + GR++ + + + Sbjct: 66 MSQMDFAQRVTMARRRVGMTMAQAAELIGCSRPLLAQWE----SGRSKSLGGKYLLGAAR 121 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 E + +L D + +K + P G G Sbjct: 122 AYKVNPEWLAELTDDDGYPWDPSARKISNVSETETPAGYLRFDLYEGAAGMGPGIINQDY 181 Query: 121 PEIRSPHN----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 PE+ G + + SM P GD++ +++A GD Sbjct: 182 PEVIRTLEVAEWEVRRKLGFLPRPGRIQIITGRGPSMRPKIEDGDVVWIDTACDYFDGDD 241 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + G+ K+L R + ++S+N +P + ++ R Sbjct: 242 YYLINIEGETSIKMLQRRSDG-VYVVSVNPEFPAWRPDPDSLQVKGR 287 >gi|229591326|ref|YP_002873445.1| putative phage repressor [Pseudomonas fluorescens SBW25] gi|229363192|emb|CAY50253.1| putative phage repressor [Pseudomonas fluorescens SBW25] Length = 210 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 20/210 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E +T LA + G+ + R PS + ++LAA ++ Sbjct: 12 MEDRKVTQGELAERLGMSQGGVGHWLN-----KRRAPSLVDMNRVLAALGLGYLEVALDI 66 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 ++ P +P S G + + + + Y Q Sbjct: 67 RERAEEAPPEKNYNPYYRYPVSDWRGVCEVREERAPYGMSRFELTD--------YHAQGD 118 Query: 137 DTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRGR 191 +M G +++++ AI G ++ + + + L+ G+ Sbjct: 119 AFWLPVTGDAMTAPSGLSVSAGMMILVDPAIAAEPGKLVVAQWAESPHATFRQLLEESGQ 178 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + L+ LN YP + + ++ A Sbjct: 179 -LYLVPLNPTYPKRLFT-DECRILGVVVQA 206 >gi|84495889|ref|ZP_00994743.1| LexA repressor [Janibacter sp. HTCC2649] gi|84382657|gb|EAP98538.1| LexA repressor [Janibacter sp. HTCC2649] Length = 250 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 61/219 (27%), Gaps = 12/219 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 +K+ + I +R PS + + GL S + +E + R P+ + Sbjct: 31 QRKVLDVIRNSVDRRGYPPSMREIGQAVGLTSPSSVSHQLHALEKKGYLRRDPNRPRALE 90 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ + +T + + + + G G Sbjct: 91 VI--SPDTPSDIRGYRGGAAPDDIDADLDPTGSGDARPEATYVPVLGRIAAGVPIMAEES 148 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + P + K SM+ GD +++ + GD + + Sbjct: 149 VDEVFPLPKQIVGEGTLFLLKVVGDSMIDAAICDGDWVVVRQQPTADNGDIVAAMLD-NE 207 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + + LM N + + + ++ Sbjct: 208 ATVKTFKRK-DGKVWLMPHNPAFDPI--DGDHATILGKV 243 >gi|227503458|ref|ZP_03933507.1| LexA repressor [Corynebacterium accolens ATCC 49725] gi|227075961|gb|EEI13924.1| LexA repressor [Corynebacterium accolens ATCC 49725] Length = 236 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 55/217 (25%), Gaps = 9/217 (4%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I I PS + AGL TS + +E + + + + Sbjct: 20 QRRILNVISDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 79 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + P + P + G G + Sbjct: 80 VRHLNTDDAEKKPGRKAKDVPDTSARGPEESAAVAYIPVV---GRIAAGAPITAEENIDT 136 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P + + SM GD +I+ S G+ + + Sbjct: 137 YFPMPDEVVGGGELYMLQVVGDSMQDAGILNGDWVIIRSQSVAEEGEFVAALLDGSEATV 196 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N YP D E + +++ Sbjct: 197 KEFHRDSSG-VWLLPHNDAYPPI--NGDDAEIMGKVV 230 >gi|312873795|ref|ZP_07733839.1| peptidase S24-like protein [Lactobacillus iners LEAF 2052A-d] gi|311090676|gb|EFQ49076.1| peptidase S24-like protein [Lactobacillus iners LEAF 2052A-d] Length = 230 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 19/231 (8%) Query: 4 FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K+I+ + ++ + + L G + + + R E + Sbjct: 3 LGNKEIFSQNLKYYMYKYGVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60 Query: 63 AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSG----------SGGFFDSGVF 109 + + D ++ + + + G Sbjct: 61 NIKKSDLVEKQTDKQIDILPVYNQLADIRKHKVYSYAQQQLDEQNSNLNEHRSIYLVGSS 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 G + + + I A D + SM P I+ + + G+ Sbjct: 121 AAGLPLDYGDLDAELIDLSNIPA--KADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGE 178 Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + K + I L S+N Y + + +++ Sbjct: 179 IGIFEINGSAVTCKKYYVDYGSKKIVLKSINPKYEPMYFNGEQVRILGKVV 229 >gi|309973095|gb|ADO96296.1| Probable prophage repressor protein [Haemophilus influenzae R2846] Length = 218 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58 + E I E+ ++ LA + ++ R P E I Sbjct: 4 LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A N L ++ + +E KE P +G + D + + + Sbjct: 59 SIISKALNI----LPEVLAFNSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 I S + + SMLP + +GD+++++ I G + Sbjct: 115 PSTVIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIAPTPGKFVAAINGDN 165 Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216 + K R +L+ LN +P + +I I Sbjct: 166 EATFKQYKELGTRTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209 >gi|326692763|ref|ZP_08229768.1| LexA repressor [Leuconostoc argentinum KCTC 3773] Length = 213 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 55/220 (25%), Gaps = 28/220 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++ I + P+ + GL +S +R +G +++ + Sbjct: 9 KQLQVLRFIHEAQTNNGYPPTVREVGEAVGLSSSSTIHGHIERLVKKGYLLKDASKPRAR 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T+ + L + + + Sbjct: 69 AIEVTDLGLEALGVSTTPGRIPVLGQVTAGTPILAV--------------EEEATEFFPI 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + SM+ + GD +I+ + GD ++ + Sbjct: 115 PDNLMQF------DGDMFMLNVRGNSMVNIGILDGDKVIVRKQDNADNGDVVVAMNDDDE 168 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N ++ + + +++ Sbjct: 169 ATVKRFFR-EADHFRLQPENDAMAPIILDN--VTILGKVI 205 >gi|254490799|ref|ZP_05103982.1| LexA repressor [Methylophaga thiooxidans DMS010] gi|224463971|gb|EEF80237.1| LexA repressor [Methylophaga thiooxydans DMS010] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 56/223 (25%), Gaps = 32/223 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTP--SGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57 M + + + I + H +P S +A G+ + ++ + ++ Sbjct: 1 MLTEREQNTLDFIRHYVDEHGRSPLVSEIAEGLGIRSQGTTHRYIQALVDAGL------- 53 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + G G Sbjct: 54 -------------------LERHVGRTRGLRLTEQPEDIAADPVTLPVMGKIAAGRLVEA 94 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176 V + K SM+ GD +++ S GD ++ Sbjct: 95 VADESEIDLSDMF--TGKGRFVLKVNGDSMIDKAIMSGDYVVVQSQSTARHGDIVVALVD 152 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ ++ LM N Y T+ + ++ Sbjct: 153 GFDATLKTLLLNDDGTVTLMPANSHYEAVTLPADRVRVQGIVV 195 >gi|270283997|ref|ZP_05965389.2| repressor LexA [Bifidobacterium gallicum DSM 20093] gi|270277903|gb|EFA23757.1| repressor LexA [Bifidobacterium gallicum DSM 20093] Length = 263 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 62/217 (28%), Gaps = 18/217 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + AI + + PS L + GL TS K + + + + + + Sbjct: 56 QQAMLNAIQELTSANGFAPSMRELGQAVGLSSTSSVKHQLQVLADKGYIRKVGNKGRAIE 115 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 I + + + P + + + + + +P Sbjct: 116 I----IDADTPTLGNIADISISGLPSLENSMDVPLVGSIAAGTPITAEQHVEDVMRLPVR 171 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM+ GD +++ + GD + + Sbjct: 172 LTGT-------GKLFMLEVHGDSMVDAAICDGDFVVVREQHTADNGDIVAAL-LGDEATV 223 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I LM N Y + + + + +++ Sbjct: 224 KTF-RNEDGHIWLMPHNPSYSPI--DGTHAQIMGKVV 257 >gi|313123989|ref|YP_004034248.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280552|gb|ADQ61271.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 209 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 62/219 (28%), Gaps = 31/219 (14%) Query: 9 IWEAIDRMAERHNLTPSGLARKA-------GLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 I I + + +T LA + G +K + E P S+ ++ Sbjct: 3 IGTRIRLLRKSKKMTLEELANQLNSRSSSSGFTKGRLSKWENDREE-----PKLSSLNQV 57 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 N I + + P + N + + VP Sbjct: 58 ARFFNVDIDYFFNDSHPSNTLPLSRNT-----IRVPVIGTIACGDPIDADENIVDYINVP 112 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDI 180 E I + +SM P GD +++ V G+ ++ Sbjct: 113 EP---------IPANAFALICEGSSMEPSIIDGDKVVIEPTPDVEDGEVAAVLVDDQTKA 163 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + G SI LM N Y ++ + RI+ Sbjct: 164 TLKRIKHI-GNSIWLMPDNRDYDPIVLDA---QHPGRII 198 >gi|148825949|ref|YP_001290702.1| putative prophage repressor CI [Haemophilus influenzae PittEE] gi|229846735|ref|ZP_04466842.1| putative prophage repressor CI [Haemophilus influenzae 7P49H1] gi|148716109|gb|ABQ98319.1| putative prophage repressor CI [Haemophilus influenzae PittEE] gi|229810224|gb|EEP45943.1| putative prophage repressor CI [Haemophilus influenzae 7P49H1] Length = 218 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58 + E I E+ ++ LA + ++ R P E I Sbjct: 4 LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A N L ++ D +E KE P +G + D + + + Sbjct: 59 SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 I S + + SMLP + +GD+++++ I G + Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165 Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216 + K + +L+ LN +P + +I I Sbjct: 166 EATFKQYRELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209 >gi|126699540|ref|YP_001088437.1| SOS regulatory protein [Clostridium difficile 630] gi|123363348|sp|Q187P1|LEXA_CLOD6 RecName: Full=LexA repressor Length = 215 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 53/221 (23%), Gaps = 26/221 (11%) Query: 3 SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + K+ I E I P+ + GL TS S + Sbjct: 8 DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K+ + + + ++ P + N + Sbjct: 56 EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + + + + SM+ D ++++ ++ Sbjct: 115 PFPASLVKG-------SNNFVLRVKGESMINAGILDEDYVVVDKKNTALNSQIVVALING 167 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K G I L N + S++E + + Sbjct: 168 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 207 >gi|255325148|ref|ZP_05366254.1| repressor LexA [Corynebacterium tuberculostearicum SK141] gi|255297713|gb|EET77024.1| repressor LexA [Corynebacterium tuberculostearicum SK141] Length = 234 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 18/220 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 ++I I PS + AGL TS + +E + R P+ Sbjct: 21 QRRILNVISDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 80 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T + ++ E + + P + + N + Sbjct: 81 VRHL--NTDDGAKKPGRKPAKPEQQVPAEAGAVSYIPVVGRIAAGAPITAEENVDTYFPM 138 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + SM GD +I+ S G+ + + Sbjct: 139 PDEVVGG-------GDLYMLQVVGDSMQDAGILDGDWVIIRSQSVAEEGEFVAALLDGAE 191 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D E + +++ Sbjct: 192 ATVKEFHRDSSG-VWLLPHNDAYAPI--NGDDAEIMGKVV 228 >gi|187251395|ref|YP_001875877.1| XRE family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186971555|gb|ACC98540.1| Transcriptional regulator, XRE family [Elusimicrobium minutum Pei191] Length = 261 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 74/214 (34%), Gaps = 20/214 (9%) Query: 13 IDRMAER--HNL---TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I+ + + + + + LA K + ++ + I+ P +++I I + Sbjct: 40 IEALLKEWNNGVLKGSQKKLATKLDVGESAVSGWISGRIK-----PGSDNIIAISKIFKK 94 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + ++ ++ ++ + + G + F T P + P Sbjct: 95 SEKEIKEIFGIQDKSKKDLPTMEMVRINNYVPFMGEIYADRFNCAILEET---PSLYIP- 150 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--QVNCGDRLLIKPRTGDIVAKVL 185 + D K + M P ++G +IL V+ G+ ++ + + K Sbjct: 151 --VLRGDDNDYAAKVRGDCMEPSLKEGTTIILRKCTITDVSEGEIVIAR-LEDECTLKRF 207 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +I L+ N Y + +IE A+++ Sbjct: 208 Y-LESNTIWLIPDNDAYEPIFGSIHEIEIQAKVI 240 >gi|152987887|ref|YP_001347761.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150963045|gb|ABR85070.1| transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa PA7] Length = 283 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 31/278 (11%), Positives = 64/278 (23%), Gaps = 60/278 (21%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR----------- 51 + ++ AI+ N++ LA + G+ P S G + + Sbjct: 1 MLTGPQLGAAIEAARLAKNMSKKALAEQFGVKPPSVQGWINTGRIDKAKLIELISFFSDV 60 Query: 52 -----------------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88 P + + K++ L + + Sbjct: 61 VGAEHWGLSEKEAELIAPSSSHQHPGSSAAEKVMEMLQRHGKGLSGEAKAKIAQAVAESL 120 Query: 89 EIPLLYFPPSGSGGFF--------------DSGVFPTGNKW---NTVGVPEIR------- 124 + L F G Sbjct: 121 DGDLSTTSNVIHADFSRTTLVKGNTISIAQYDVRAAMGGGQVPAEYREFVRNLVVDKVQL 180 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y+ T SML ++I++ I + + + + K Sbjct: 181 DDLGLKYSDATNLKIITGWGQSMLGTIDDKSLIIVDVGITDFVEEGVYVFTWLQHLFVKR 240 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL--W 220 + L+S N + M D+ + A++L W Sbjct: 241 VQIHDAEHYLLVSDNKSFEPQKARMEDVHFQAKVLGAW 278 >gi|329116763|ref|ZP_08245480.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907168|gb|EGE54082.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 225 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 64/215 (29%), Gaps = 12/215 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E LA + G+ ++ K ++ + + + K L T + + Sbjct: 7 LKQKREELGFEQQELAERIGVSKQAYFKWEKGLS--KPTKVNIAKLEKALNVTEGYLSED 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPEIRS 125 T +EK I + + + + + ++ Sbjct: 65 EISSLYKQLTEPNQEKAITYVRDMVFSQKVISIAENRSEYHVYEKLSAGIGASVYGDLDY 124 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 D SM P Y+ G++ ++ G + I K + Sbjct: 125 DVVYYNEELPHDFASWVDGDSMEPTYQNGEVALIRETGFDYDG-AVYAVVWDSQIYIKKV 183 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + + L+S+N YP V + + +I+ Sbjct: 184 YREKEG-LRLVSINKDYPDKFVPFDENPRVVGKIV 217 >gi|257470283|ref|ZP_05634374.1| transcriptional regulator, XRE family protein [Fusobacterium ulcerans ATCC 49185] gi|317064494|ref|ZP_07928979.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690170|gb|EFS27005.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 224 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 14/216 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KK+ + I+ + + N + LA K+G++ S N+ G+ + + + K+ A Sbjct: 14 RKKLGDYIEELRNKKNYGFNQLAMKSGVNVRSLNEIIN----GKAKKVNPFHLKKLAKAL 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIR 124 N + + + F +G + + + +P Sbjct: 70 NVDYKEFYKIVGYLDEDEKIVPNAEIAFNFKRVPVYENISAGYGAAESDILDYISLP--- 126 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + G + + SM I+ + ++ K Sbjct: 127 -NYQGTFT--GDIFAVQVHGDSMENTIEDKSIVFIKKDAEIQNKKIGAFIVNNN-AYLKR 182 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 L S N Y ++ D + + + Sbjct: 183 YFEDEHGVF-LRSDNREYRDIEIKAGDDFIVVGKYI 217 >gi|237785678|ref|YP_002906383.1| LexA family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758590|gb|ACR17840.1| transcriptional regulator, LexA family [Corynebacterium kroppenstedtii DSM 44385] Length = 244 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 62/229 (27%), Gaps = 14/229 (6%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53 M S + +I + I PS + + AGL TS + +E + R P Sbjct: 14 MDSLTDRQHRIIDVIHDAIVLRGYPPSIREIGQAAGLTSTSSVAYQLKELERKGFLRRDP 73 Query: 54 STESI--FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + KI T T L + + + + G Sbjct: 74 NKPRAVGLKIADPTKPTGSSSLHHADEESTPSASENVADSDIESNHPTPVFIPTIGRIAA 133 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 G P + SM GD +++ S GD Sbjct: 134 GTPILAEQEVTDEFPLPRELTGEGDLYILSVVGESMRDAGILDGDYVVVRSQNVAEIGDF 193 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ G+ K R + L+ N + + + +++ Sbjct: 194 VVAMID-GNATVKEFHRDRTG-VWLLPHNDAFDPI--PGDEATILGKVV 238 >gi|81428886|ref|YP_395886.1| LexA repressor [Lactobacillus sakei subsp. sakei 23K] gi|123742219|sp|Q38W54|LEXA_LACSS RecName: Full=LexA repressor gi|78610528|emb|CAI55579.1| Transcriptional repressor LexA [Lactobacillus sakei subsp. sakei 23K] Length = 204 Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 36/226 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54 MT K+ + I + P+ + L TS R +G + Sbjct: 1 MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ L T ++IP+L +G Sbjct: 61 TKPRAIELTPAGLTAIG-------------ATPQKIPVLGVVTAGVPI------LAVEEA 101 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + +P + + SM+ GD +I+ + GD ++ Sbjct: 102 TDYFPLPPSL-------QTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIA 154 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N + + +++ + +++ Sbjct: 155 MTAEDEATCKRFFK-EADHYRLQPENDTFEPIIL--NEVSILGKVV 197 >gi|310658539|ref|YP_003936260.1| lexa [Clostridium sticklandii DSM 519] gi|308825317|emb|CBH21355.1| LexA [Clostridium sticklandii] Length = 208 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 51/217 (23%), Gaps = 28/217 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I I ++ PS + L TS S + K+ Sbjct: 8 KQLEILLYIKEEIQKKGYPPSVREICSAVDLKSTSTVHSH---------------LNKLE 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + +++ P + + N + +P Sbjct: 53 EYGYIKKDPTKPRAIEVILSDDEEGFYRRSSVDIPLLGVVTAGAPILAVENIEEFLPIPS 112 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + K + SM+ D +I+ GD ++ + Sbjct: 113 SWVNN-------GTYFMLKVKGDSMINAGIYDKDTIIVEKTEYAKNGDIVVALINDDETT 165 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + I L N Y +I + + Sbjct: 166 VKRFFKEKN-RIRLQPENEAYSPIY--PENISILGVV 199 >gi|227504882|ref|ZP_03934931.1| LexA repressor [Corynebacterium striatum ATCC 6940] gi|227198573|gb|EEI78621.1| LexA repressor [Corynebacterium striatum ATCC 6940] Length = 241 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 58/220 (26%), Gaps = 11/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 ++I + I PS + AGL TS + +E + R P+ Sbjct: 21 QRRILDVIHDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 80 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + NE + + + G G+ Sbjct: 81 VRHLNNEEDTKKPGRKTGAKADKPEPGSSMTPEEASEVAYIPVV--GRIAAGSPITAEEN 138 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + P + + SM GD +I+ S G+ + + Sbjct: 139 IDTYFPMPNDVVGTGELYMLQVVGDSMRDAGILNGDWVIIRSQNVAEEGEFVAALLDGDE 198 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L+ N Y + D E + +++ Sbjct: 199 ATVKEFHRDSSG-IWLLPHNDAYSPI--KGDDAEIMGKVV 235 >gi|212638482|ref|YP_002315002.1| SOS-response transcriptional repressor LexA (HTH, RecA-mediated autopeptidase) [Anoxybacillus flavithermus WK1] gi|212559962|gb|ACJ33017.1| SOS-response transcriptional repressor LexA (HTH, RecA-mediated autopeptidase) [Anoxybacillus flavithermus WK1] Length = 195 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 66/200 (33%), Gaps = 17/200 (8%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 +T + LA+K + PT+ + +R P + I + + I + + Sbjct: 1 MTQADLAKKLNVAPTAVSAWERNENR-----PLMDKIAIMSEMFDVPISYFFEDFKTIQE 55 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141 E+ + + + G G+ + + + + Sbjct: 56 VREEPAQ------YICTEFSRLPIIGSISCGDGVIAYEEIKGYEEVPSSWLNGGEYFFLE 109 Query: 142 TQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200 + SM+ G +L++ V+ G+ + G+ V K + +I L S N Sbjct: 110 ARGDSMINAHITDGALLLIRRQNDVDNGEIAAVLID-GEAVLKRVYK-TEDTIILQSENP 167 Query: 201 CYPVDTV---EMSDIEWIAR 217 Y + +M D+ I + Sbjct: 168 MYKPIILKRNDMKDVRIIGK 187 >gi|239637028|ref|ZP_04678022.1| repressor LexA [Staphylococcus warneri L37603] gi|239597378|gb|EEQ79881.1| repressor LexA [Staphylococcus warneri L37603] Length = 207 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 59/227 (25%), Gaps = 34/227 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53 M + +I++ I ++ + PS + GL ++ + E R P Sbjct: 1 MRELTKRQSEIYDYIKQIVQSKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIKRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +I+ + P + N Sbjct: 61 TKPRAIEIV------------------SEQLNDNISMEETIHVPVIGKVTAGIPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +PE + + + SM GD +I+ S GD ++ Sbjct: 103 IEEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIV 157 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + +++ Sbjct: 158 AMTEDDEATVKRFYKEKN-RYRLQPENSTMDPIYLDN--VIVVGKVI 201 >gi|329120981|ref|ZP_08249612.1| LexA repressor [Dialister micraerophilus DSM 19965] gi|327471143|gb|EGF16597.1| LexA repressor [Dialister micraerophilus DSM 19965] Length = 209 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 37/227 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWP 53 M + + I + I + E N P+ + + GL T + + E R P Sbjct: 6 MRKLTSREQSILDFIRKKIEDSNFPPTVREICQAVGLKSTSTVHGYLTRLEELGVIKRNP 65 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 S+ +++ + + P VF + Sbjct: 66 SSSRAIELIDHNESWKSKKMLPM--------------------PVVGSVRAGEPVFADEH 105 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +P N + SM+ +GD LI++ N GD ++ Sbjct: 106 IETVFPLPAEMIGSN------GNCFILVVRGDSMINAGINEGDYLIVSEQNTANDGDIVV 159 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K + + L N Y ++ +++ Sbjct: 160 ALVDNEDATVKRFYKKTD-YVLLKPENDNYEPII--SRNVIIRGKVI 203 >gi|311113259|ref|YP_003984481.1| repressor LexA [Rothia dentocariosa ATCC 17931] gi|310944753|gb|ADP41047.1| repressor LexA [Rothia dentocariosa ATCC 17931] Length = 222 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 65/220 (29%), Gaps = 23/220 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPSTESIFK 60 +KI +AI E+ PS + GL +S ++ R G R P + Sbjct: 14 QQKILDAIRTEIEQKGYPPSMRQIGDIVGLASLSSVTHQLGRLEKMGYIRRDPKLPRAIE 73 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL +++ +PL+ +G + + + + Sbjct: 74 ILDDLEHEGTSAHFPELPTFEVSDEDMVPVPLVGRIAAGGPIT------AEQSVEDVLSL 127 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + SM+ GD +++ + GD + + Sbjct: 128 PRQLVGS-------GKLFMLRVKGDSMIDAAICDGDWVVVREQHTADNGDIVAALLD-DE 179 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KV + L+ N Y + +++ Sbjct: 180 ATVKVF-RQVDGHTWLLPRNSQYEPIL--GDRATVMGKVV 216 >gi|326445052|ref|ZP_08219786.1| LexA repressor [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 56/214 (26%), Gaps = 24/214 (11%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I R + PS + + GL TS + +E K + Sbjct: 28 ILACIARSVSKRGYPPSMREIGQAVGLTSTSSVAHQLLALE-----------RKGALRRD 76 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + LP ++ + P + V +T +P Sbjct: 77 PHRPRAYCLPLRSPAGEYEQPENQNAATEVPLVGRIEAGAPVLAEQMIEDTYLLPRQLVG 136 Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + K SM GD++ + GD + G+ K Sbjct: 137 -------EGELFALKVTGESMIEAAICDGDVVTVRRQQVAQPGDIVAAMLD-GEATVKRF 188 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L++ N + + + +++ Sbjct: 189 QRDAAGHAWLVAHNPRFQP--LAADHAVILGKVV 220 >gi|225418742|ref|ZP_03761931.1| hypothetical protein CLOSTASPAR_05966 [Clostridium asparagiforme DSM 15981] gi|225041731|gb|EEG51977.1| hypothetical protein CLOSTASPAR_05966 [Clostridium asparagiforme DSM 15981] Length = 205 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I E I + P+ + L TS S +E + R P+ Sbjct: 9 KQEEILEYIKETILKKGYPPAVREICEAVHLKSTSSVHSHLSTLEEKGFIRRDPTKPRTI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL T + + P + N + Sbjct: 69 EILDDTFNFNRREMTN--------------------VPVVGAVAAGQPLLAEQNIEDYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P P+ + + SM+ GD +I+ GD ++ Sbjct: 109 IPVELLPN-------ADTFMLRVKGDSMINAGILDGDQIIVEQTPSAQNGDIVVAL-LED 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V+ ++ +++ Sbjct: 161 SATVKRFYR-EDGHYRLQPENDYMDPIIVDH--VDIQGKVI 198 >gi|227356085|ref|ZP_03840476.1| phage repressor protein [Proteus mirabilis ATCC 29906] gi|227163862|gb|EEI48770.1| phage repressor protein [Proteus mirabilis ATCC 29906] Length = 245 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 12/220 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----EGRNRWPSTESIFKILA 63 + + I + + S A L+ S S + R W K Sbjct: 28 LGKRITEALAKQGIKVSAPAVWKWLNGESVPDSTNILALSQWLDVRAEWLEYGRGAKKND 87 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + ++ + + + + G + + Sbjct: 88 GISVNEIMPVNDWDNSTPIERDEVEIPFYSTIELAAGFGSCTTDNQKVE------LLRFS 141 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 RS N + K SM P+ I+ +++ + + + K Sbjct: 142 RSTFNQYGVQPSDAVAFKVHGDSMSPVIPDSSIVTISTGHTKIIDGGIYAIQQGDLLRVK 201 Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 +L I + S N YP + + +++ + R+ S Sbjct: 202 ILHRLPNNKIIIRSYNTIDYPDEESTLEEVKILGRVFNWS 241 >gi|148543909|ref|YP_001271279.1| LexA repressor [Lactobacillus reuteri DSM 20016] gi|184153305|ref|YP_001841646.1| LexA repressor [Lactobacillus reuteri JCM 1112] gi|227364819|ref|ZP_03848867.1| SOS-response transcriptional repressor, LexA [Lactobacillus reuteri MM2-3] gi|325682556|ref|ZP_08162073.1| transcriptional repressor LexA [Lactobacillus reuteri MM4-1A] gi|166990802|sp|A5VJB8|LEXA_LACRD RecName: Full=LexA repressor gi|229621227|sp|B2G6T4|LEXA_LACRJ RecName: Full=LexA repressor gi|148530943|gb|ABQ82942.1| SOS-response transcriptional repressor, LexA [Lactobacillus reuteri DSM 20016] gi|183224649|dbj|BAG25166.1| SOS-response transcriptional repressor [Lactobacillus reuteri JCM 1112] gi|227070163|gb|EEI08538.1| SOS-response transcriptional repressor, LexA [Lactobacillus reuteri MM2-3] gi|324978395|gb|EGC15345.1| transcriptional repressor LexA [Lactobacillus reuteri MM4-1A] Length = 208 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 45/232 (19%) Query: 1 MTSF-SHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGR 49 M +K+ + I + E H P+ + GL TS ++ ++ ++ Sbjct: 1 MAKLAKNKQMAVLNYIHKQVEDHGYPPTVREICSAVGLSSTSTVHGHISRLIEQGFLQKD 60 Query: 50 NRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 P E K L Q + + Sbjct: 61 PSKPRALEITPKGLDILGVKPIQKEIPMLGVVTAGQP----------------------I 98 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 N +P +N + TSM+ GD +I+ Sbjct: 99 LAVENATEFFPIPPSIQDNN-------DLFMLTIRGTSMIKAGIFNGDQVIVRKQSTAKN 151 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + L N ++ ++ + +++ Sbjct: 152 GDIVIAMNDDNEATCKRFYKEK-TRFRLQPENDTMEPIFLDN--VKILGKVV 200 >gi|145632822|ref|ZP_01788555.1| putative prophage repressor CI [Haemophilus influenzae 3655] gi|145635978|ref|ZP_01791661.1| putative prophage repressor CI [Haemophilus influenzae PittAA] gi|229844113|ref|ZP_04464254.1| putative prophage repressor CI [Haemophilus influenzae 6P18H1] gi|144986478|gb|EDJ93044.1| putative prophage repressor CI [Haemophilus influenzae 3655] gi|145266765|gb|EDK06786.1| putative prophage repressor CI [Haemophilus influenzae PittAA] gi|229813107|gb|EEP48795.1| putative prophage repressor CI [Haemophilus influenzae 6P18H1] Length = 218 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58 + E I E+ ++ LA + ++ R P E I Sbjct: 4 LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A N L ++ D +E KE P +G + D + + + Sbjct: 59 SIISKALNI----LPEILAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 I S + + SMLP + +GD+++++ I G + Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165 Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216 + K + +L+ LN +P + +I I Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209 >gi|70729495|ref|YP_259233.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68343794|gb|AAY91400.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens Pf-5] Length = 242 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 64/234 (27%), Gaps = 24/234 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-TNETI 69 + + L + LA +AGL TS + +R + S+ + + E + Sbjct: 5 DRLKTARRHAQLNQTELAERAGLTQTSISDLERGKSKATAFVAQIASVCGVSSMWLAEGV 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-------GGFFDSGVFPTGNKWNTVGVPE 122 ++L + T+ + + + F G+ + + Sbjct: 65 GEMLKAADTASARTQPSVHLDDIETWDDATPLDDNEVYVPFLHEVELAAGSGRFVIEESD 124 Query: 123 IRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLI 173 ++ SM+P+ R G + +N + Sbjct: 125 TARLRFFKKDLRQNGVQFNNAKCVSVSGNSMVPVLRDGATVGVNVGRNALKDVVDGEMYA 184 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD------TVEMSDIEWIARILWA 221 G + K + + L S N D ++ I + + W Sbjct: 185 LNHNGQLRVKQVYRLPVG-LRLRSFNRDEHPDEDYSFAEIQEQQISILGHVFWW 237 >gi|309805037|ref|ZP_07699094.1| peptidase S24-like protein [Lactobacillus iners LactinV 09V1-c] gi|308165696|gb|EFO67922.1| peptidase S24-like protein [Lactobacillus iners LactinV 09V1-c] Length = 230 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 19/231 (8%) Query: 4 FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K+I+ + ++ + + L G + + + R E + Sbjct: 3 LGNKEIFSQNLKYYMYKYGVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60 Query: 63 AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGG----------FFDSGVF 109 + + D ++ + + + G Sbjct: 61 NIKKSDLVEKQTDKQIDILPVYNQLADIRKHKVYSYAQQQLDEQNSNLNEKRSIYLVGSS 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 G + + + I A D + SM P I+ + + G+ Sbjct: 121 AAGLPLDYGDLDAELIDLSNIPA--KADKAIHIKGDSMEPKISNNSIIFYHEQPTLEIGE 178 Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + K + I L S+N Y + + +++ Sbjct: 179 IGIFEINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFTGDQVRILGKVV 229 >gi|306830136|ref|ZP_07463320.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304427662|gb|EFM30758.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 228 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-NRWPSTESIFKILAATNETI 69 E + + LT +A + G+ +++ +R E + E+I K+ I Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSQEKVAQLENILKVAKGYFTQI 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122 + + +K L + + + Sbjct: 65 EIVRLYNSLSKQGKDKVVLYARNLAKEEQTQKVMTMPERLYEYRVYERMSAGIGASVYDD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 RNFDTVYFNEELAHDFASWVAGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220 >gi|220936231|ref|YP_002515130.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7] gi|219997541|gb|ACL74143.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7] Length = 197 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 59/223 (26%), Gaps = 37/223 (16%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57 M + + + I R RH P+ + G+ + ++ + ++ Sbjct: 1 MLTPQQRNTLDVIRRHLHRHGHAPTLTEIGEALGVRSKGAVHRLVQALVDK--------- 51 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 G T + L + G G Sbjct: 52 ----------------------GFLTRESPGWRGLRPTGSDAAFSLPLVGRIAAGRPIEA 89 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + P + + + + SM+ GD +++ A GD ++ Sbjct: 90 I--PGEDTLDLADFLLGPGRYALRVVGESMVGAGILDGDTVVVQQADSARDGDIVVALID 147 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + R ++L + N + + + ++ Sbjct: 148 DEEATLKRIRHRPDGQVELRAENPAMAPLVYDAARVRIQGVVV 190 >gi|303228886|ref|ZP_07315698.1| repressor LexA [Veillonella atypica ACS-134-V-Col7a] gi|303231423|ref|ZP_07318154.1| repressor LexA [Veillonella atypica ACS-049-V-Sch6] gi|302513860|gb|EFL55871.1| repressor LexA [Veillonella atypica ACS-049-V-Sch6] gi|302516450|gb|EFL58380.1| repressor LexA [Veillonella atypica ACS-134-V-Col7a] Length = 225 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 64/222 (28%), Gaps = 19/222 (8%) Query: 5 SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I E I D + + T + GL TS +S +E R P+ Sbjct: 11 KQRRILEFIRDSLHNEYRCPTVREICAYVGLSSTSTVQSHLNTLEKFGYIKRDPNKNRAI 70 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 IL P + F +G G G V Sbjct: 71 TILDE---------GKPKVSVSKENNETTSSDNFEFLGAGLKQVPLIGTVQAGTPITAVE 121 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + Q SM+ + +GD+LI+ N GD ++ + Sbjct: 122 NLEATLTLPVQLTGDSDCFMLRVQGESMMNIGMYEGDMLIVRHQNTANNGDIVVARID-D 180 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218 + K I L N + V+ IE I + Sbjct: 181 EATVKRFYK-ENGHIRLQPENDNFDPIIVDDCHIEGLVIGLV 221 >gi|313891931|ref|ZP_07825532.1| repressor LexA [Dialister microaerophilus UPII 345-E] gi|313119574|gb|EFR42765.1| repressor LexA [Dialister microaerophilus UPII 345-E] Length = 209 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 37/227 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWP 53 M + + I I + E N P+ + + GL T + + E R P Sbjct: 6 MRKLTSREQSILNFIRKKIEDSNFPPTVREICQAVGLKSTSTVHGYLTRLEELGVIKRNP 65 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 S+ +++ + + P VF + Sbjct: 66 SSSRAIELIDHNESWKSKKMLPM--------------------PVVGAVRAGEPVFADEH 105 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +P N + SM+ +GD LI++ N GD ++ Sbjct: 106 IETVFPLPAEMIGSN------GNCFILVVRGDSMINAGINEGDYLIVSEQNTANDGDIVV 159 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K + + L N Y ++ +++ Sbjct: 160 ALVDNEDATVKRFYKKTD-YVLLKPENDNYEPII--SRNVIIRGKVI 203 >gi|292671017|ref|ZP_06604443.1| LexA repressor [Selenomonas noxia ATCC 43541] gi|292647334|gb|EFF65306.1| LexA repressor [Selenomonas noxia ATCC 43541] Length = 214 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 55/222 (24%), Gaps = 34/222 (15%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58 ++ +I + I PS + GL ++ ++ Sbjct: 17 STRRQSEILQYIKDFLIEKGYPPSVREIGTAVGLKSSSTVHRYL---------------- 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +L D + IP+ + N + Sbjct: 61 -AMLEENGAIRRDATKPRAIDIMGENPWGRTIPVPLV----GVVTAGEPILAEQNIEDVF 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + Q SM+ + GD +++ N GD ++ Sbjct: 116 SFPRGLIGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALVNG 169 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N +D++ + +++ Sbjct: 170 ESATVKRFFREKN-CIRLQPENDSMEPFY--ETDVQVLGKVI 208 >gi|242242619|ref|ZP_04797064.1| LexA repressor [Staphylococcus epidermidis W23144] gi|242233755|gb|EES36067.1| LexA repressor [Staphylococcus epidermidis W23144] gi|319401371|gb|EFV89582.1| lexA repressor [Staphylococcus epidermidis FRI909] Length = 206 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 57/225 (25%), Gaps = 31/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + +I++ I ++ + PS + GL ++ + Sbjct: 1 MRELTKRQSEIYDYIKKIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + + + E + P + N Sbjct: 50 ------LEEKGYIRRDPTKPRAIEIVSEQLDEVNVEETIHVPVIGKVTAGVPITAVENIE 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 158 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 159 TEDEEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VIVIGKVI 200 >gi|225374398|ref|ZP_03751619.1| hypothetical protein ROSEINA2194_00012 [Roseburia inulinivorans DSM 16841] gi|225213636|gb|EEG95990.1| hypothetical protein ROSEINA2194_00012 [Roseburia inulinivorans DSM 16841] Length = 231 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 24/233 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K + + I + + H L S LA++ + S + + R ++ +I Sbjct: 2 KDLGKTIAKYRKEHKLNQSQLAKELENYDIYVKQNSISAWELGTATPNARQFL--ALCEI 59 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-VFPTGNKWNTVGV 120 L + + P + R + L Y S G + + P Sbjct: 60 LEIYDIYTDFIGQSPLNPFRNLNENGMNKVLEYISDLESTGNYKPAEIIPIHVIRERKVF 119 Query: 121 PEIRSPHNGIYAIQTQD-------------TRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 S G + + SM P Y D++ + ++ Sbjct: 120 YNTVSAGTGSFLDGDEYEIFSSPDIPEAATFGVYVDGDSMEPKYHNKDLIWIEQTACLDN 179 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 G+ + G+ K + R + L+SLN Y V E S + R+L Sbjct: 180 GEIGIFYLD-GNAYVKKFQNNRLGTY-LISLNKKYDPIPVTENSSFKIFGRVL 230 >gi|118578715|ref|YP_899965.1| putative phage repressor [Pelobacter propionicus DSM 2379] gi|118501425|gb|ABK97907.1| putative phage repressor [Pelobacter propionicus DSM 2379] Length = 235 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 65/217 (29%), Gaps = 7/217 (3%) Query: 9 IWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I+++ L + +A+ DP K+ G + + Sbjct: 18 IESIIEKLKTALGLKNDTEVAKALESDPRLLGTWKKRGTVPYEKIIKL--CIRKNINLQW 75 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 LP E++ + + + + + + Sbjct: 76 LFSDGSSLPTICRDNGLVSEEDGYIKVPRYEVRASAGGGAIIHSEQIVDHLYFKAEWVKN 135 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + Q SM P GD++++++ + + ++ K L Sbjct: 136 -ALGIPRDFLVLISVQGDSMEPTLSNGDLILVDTRTSRVEDGAIYVVQYGDALLVKRLQK 194 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 + S+ + S N Y + + D + + R++WA Sbjct: 195 KYDGSVVIRSDNPLYEAEIIHGEDALNLIIVGRVVWA 231 >gi|260437618|ref|ZP_05791434.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809970|gb|EFF69175.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 231 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 24/233 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K + + I + + H L S LA++ + S + + R ++ +I Sbjct: 2 KDLGKTIAKYRKEHKLNQSQLAKELENYDIYVKQNSISAWELGTATPNARQFL--ALCEI 59 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-VFPTGNKWNTVGV 120 L + + P + R + + L Y S G + + P Sbjct: 60 LEIYDIYTEFVGQSPLNPFRNLNENGRNKVLEYISDLESTGNYKPAEIIPIHVIRERKVF 119 Query: 121 PEIRSPHNGIYAIQTQD-------------TRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 S G + + SM P Y D++ + ++ Sbjct: 120 YNTVSAGTGSFLDGDEYEIFSSPDIPEAATFGVYVDGDSMEPKYHNKDLIWIEQTACLDD 179 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 G+ + G+ K + R + L+SLN Y V E S + R+L Sbjct: 180 GEIGIFYLD-GNAYVKKFQNNRLGTY-LISLNKKYDPIPVTENSSFKIFGRVL 230 >gi|161504556|ref|YP_001571668.1| hypothetical protein SARI_02669 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865903|gb|ABX22526.1| hypothetical protein SARI_02669 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 236 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 66/211 (31%), Gaps = 14/211 (6%) Query: 6 HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + + + + L +AR + +K P E + + Sbjct: 8 RQEFAQRLAQACKEAGLDEHGRGIAIARALDVSSKGVSKWFNAES-----LPRQEKMNAL 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + L TT+ + L F G + + Sbjct: 63 ANFLKVDVVWLQHGSVRQSTTTDPQS-----LTFVGQLRKGLVRVVGEAILGVDGAIEMT 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E R IY+ + + + SM P + G+ +++ +V GD + ++ G + Sbjct: 118 EERDGWLKIYSDDPEAFGLRVKGDSMWPRIKSGEYVLIEPNTKVCPGDEVFVRTIEGHNM 177 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 KVL R S+N + T+ ++ Sbjct: 178 IKVLGYDRDGEYQFTSINQDHRPITLPYYEV 208 >gi|306824522|ref|ZP_07457868.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433309|gb|EFM36279.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 228 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69 E + + LT +A + G+ +++ +R E + + E I K+ I Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLEKILKVAKGYFTQI 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122 + + +K L + + + Sbjct: 65 EIVRLYNSLSKQGKDKVVLYARNLAQEEQAQKVMDMPKRLYEYRVYERMSAGIGASVYDD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 RNFDTVYFNEELAHDFASWVAGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220 >gi|82751478|ref|YP_417219.1| transcriptional repressor [Staphylococcus aureus RF122] gi|82657009|emb|CAI81446.1| probable transcriptional repressor [Staphylococcus aureus RF122] Length = 222 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 71/211 (33%), Gaps = 19/211 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E+ + + + + GL T+ + +R + E++ KI N Sbjct: 21 LKYLMEKKSGSVKAFSEEIGLAYTTVRSILERGVFNAK-----VENVIKICNGLNIRPED 75 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 ++D+ + + + + + S G N + + Sbjct: 76 IMDIKQTKPIEPQIETLPVKKIPVVSKISAGLPIYC---EENLVDYIYF------SRDKL 126 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + ++ K SM L+ +GD++++ V G ++ + K + G Sbjct: 127 NDEKEEFGLKVSGDSMNKLFDEGDVVVVEKDSIVENGQLGVVMINGYNGTVKRI-RYNGD 185 Query: 192 SIDLMSL--NCCYPVDTVEMSD-IEWIARIL 219 I L+ N + D ++ + R++ Sbjct: 186 QIILIPESNNPSHYPQVYGKDDEVKIVGRVV 216 >gi|332522412|ref|ZP_08398664.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332313676|gb|EGJ26661.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 232 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 24/226 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + S LA ++ S+NK + + S ++ +IL Sbjct: 4 GSRLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLS--ALARILDVPTTYF 61 Query: 70 CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115 + + + + + + + P + G Sbjct: 62 ESEYKIVNTYLQLSTENQGKVDEYAEGLLQAQESHDNVIPLFAVEVLSDVSLSAGFGESL 121 Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + D + SM P+Y G++ ++ ++ G + Sbjct: 122 FEEYETETVYAEEEQY----GYDIAAWIKGDSMEPIYLDGEVALIRASGFDYDG-AVYAL 176 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + K L ++SLN YP + D + ++ Sbjct: 177 SWNDSVYIKKLYREENG-FRMVSLNDNYPDKWIPYEDNPRIVGLVV 221 >gi|295097139|emb|CBK86229.1| Predicted transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 230 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 50/219 (22%), Gaps = 21/219 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + LT L G+ + K + T + +I A + Sbjct: 8 RLKEARAARGLTQKALGDLVGVSQAAIQKIETGKAS------QTTKLVEIANALGV-MPD 60 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV----------GVP 121 L K+ L G + Sbjct: 61 WLSSGEGAMLNDGKQSGAALLTNAASDVFRVDVLDLTVSAGPGSFMISEFVEVLHAIEFT 120 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + Q SM P + GD L + +++ D + Sbjct: 121 NEHARALFGNRAQHDVKVMTVDGDSMCPTIQSGDRLFFDVSVRNFKVDGVYAFVFGQHFH 180 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIAR 217 K L + G + ++S N Y V + + + Sbjct: 181 VKRLQMQ-GLQLAVLSDNPAYKDWYVTEENQDQLYIMGK 218 >gi|330959920|gb|EGH60180.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 243 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + ++ + G + + Sbjct: 65 GPKHPNEPANENTGGDTRMIIQQTRNVLRGDVEIQIFTEVESTHGVGKTVLAEAPG--QR 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQTMGI--DPKNCICVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSAEDIDREKIRILGWIFWWS 231 >gi|197285586|ref|YP_002151458.1| phage repressor protein [Proteus mirabilis HI4320] gi|194683073|emb|CAR43591.1| putative phage repressor protein [Proteus mirabilis HI4320] Length = 245 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 12/220 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----EGRNRWPSTESIFKILA 63 + + I + + S A L+ S S + R W K Sbjct: 28 LGKRITEALAKQGIKVSAPAVWKWLNGESVPDSTNILALSQWLDVRAEWLEYGRGAKKND 87 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + ++ + + + + G + + Sbjct: 88 GISVNEIMPVNDWDNSTPIERDEVEIPFYSTIELAAGFGSCTTDNQKVE------LLRFS 141 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 RS N + K SM P+ I+ +++ + + + K Sbjct: 142 RSTFNQYGVQPSDAVAFKVHGDSMSPVIPDSSIVTISTGHTKIIDGGIYAIQQGDLLRVK 201 Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 +L I + S N YP + + +++ + R+ S Sbjct: 202 ILHRLPNNKIIIRSYNTIDYPDEESTLEEVKILGRVFNWS 241 >gi|322388880|ref|ZP_08062472.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140263|gb|EFX35776.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 228 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 59/223 (26%), Gaps = 21/223 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + LT +A + G+ +++ +R E PS E + ++ Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGVKE-----PSKEKVKQLEEILKVPKG 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------------FFDSGVFPTGNKWNT 117 + + + + ++ + + + + Sbjct: 60 YFTQIEIVRLYNSLSNKGKEKVVVYARNLAQEEQAKKVTAISEKLYEYHVYERMSAGIGA 119 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + D SM P Y+ G + ++ G + Sbjct: 120 SVYDDRNFDTVYFNEELAHDFASWVSGDSMEPRYQNGSVALIRETGFDYDG-AVYAVVCN 178 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 K + + L+S+N Y + D + I+ Sbjct: 179 NQTYIKRVYREDDG-LRLVSINPKYKDIHISYEEDPRIVGIIV 220 >gi|260583034|ref|ZP_05850816.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae NT127] gi|260093885|gb|EEW77791.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae NT127] Length = 218 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58 + E I E+ ++ LA + ++ R P E I Sbjct: 4 LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A N L ++ D +E KE P +G + D + + + Sbjct: 59 SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 I S + + SMLP + +GD+++++ I G + Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165 Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216 + K + +L+ LN +P + +I I Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209 >gi|269797995|ref|YP_003311895.1| SOS-response transcriptional repressor, LexA [Veillonella parvula DSM 2008] gi|269094624|gb|ACZ24615.1| SOS-response transcriptional repressor, LexA [Veillonella parvula DSM 2008] Length = 223 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%) Query: 5 SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I + I D + + T + GL TS +S +E R P+ Sbjct: 11 KQRRILDFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +L T +I + S + G G V Sbjct: 71 TVLEDTKPSISVTGNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + Q SM+ + +GD+LI+ N GD ++ + Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218 + K I L N + V+ IE I + Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219 >gi|172044068|sp|A0JUZ2|LEXA_ARTS2 RecName: Full=LexA repressor Length = 249 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 55/220 (25%), Gaps = 10/220 (4%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL---DPTSFNKSKRFGIEGRNRWPSTESIFK 60 KKI E I R + PS + GL + S+ + R P + Sbjct: 28 QKKILETIQRSVNDNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRPRAME 87 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L + + G G V Sbjct: 88 VLMPLTLDEGTAKISGVEKPARLRTIGGLAVSELATATDTAMVPLVGRIAAGGPILADQV 147 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E P + K SM+ GD +++ GD + + Sbjct: 148 VEDVMPLPRQLVGHGELFMLKVTGDSMIDAAICDGDWVVVRRQSDAVNGDIVAALLD-DE 206 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K +R L+ N Y + + + +++ Sbjct: 207 ATVKTF-RQRDGHTWLLPQNTQYEPILGDHA--NIMGKVV 243 >gi|254393262|ref|ZP_05008414.1| LexA repressor [Streptomyces clavuligerus ATCC 27064] gi|197706901|gb|EDY52713.1| LexA repressor [Streptomyces clavuligerus ATCC 27064] Length = 240 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 56/214 (26%), Gaps = 24/214 (11%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I R + PS + + GL TS + +E K + Sbjct: 42 ILACIARSVSKRGYPPSMREIGQAVGLTSTSSVAHQLLALE-----------RKGALRRD 90 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + LP ++ + P + V +T +P Sbjct: 91 PHRPRAYCLPLRSPAGEYEQPENQNAATEVPLVGRIEAGAPVLAEQMIEDTYLLPRQLVG 150 Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + K SM GD++ + GD + G+ K Sbjct: 151 -------EGELFALKVTGESMIEAAICDGDVVTVRRQQVAQPGDIVAAMLD-GEATVKRF 202 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L++ N + + + +++ Sbjct: 203 QRDAAGHAWLVAHNPRFQP--LAADHAVILGKVV 234 >gi|327439614|dbj|BAK15979.1| SOS-response transcriptional repressors [Solibacillus silvestris StLB046] Length = 207 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 56/220 (25%), Gaps = 34/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPSTESIFK 60 + I I PS + GL ++ + R +G R P+ + Sbjct: 9 QQAILTFIKEEVRSKGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIRRDPTKPRAIE 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL I + + P + + + Sbjct: 69 ILDQEEMNITKQG-------------------VIHVPLIGKVTAGLPISAIEDIQEYFPL 109 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + + + SM GD +I+ N G+ ++ + Sbjct: 110 PDAYGSP------EEELFMLEIMGESMIEAGILNGDYVIVKKTSTANNGEIVVAMTEDDE 163 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N V + + + +++ Sbjct: 164 ATVKRFYKEK-THFRLQPENSSMEPIIV--NQVSILGKVV 200 >gi|323441550|gb|EGA99200.1| hypothetical protein SAO46_2483 [Staphylococcus aureus O46] Length = 237 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 63/243 (25%), Gaps = 31/243 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I + I + N++ LA + P++ + PS I + Sbjct: 1 MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSN-----PSHGVIQR 55 Query: 61 ILA----------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 I T + + + ++ S G + Sbjct: 56 IADVFEVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLDEQNSKGDNVVDINS 115 Query: 111 -------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 E + D K SM P+++ G+I+ Sbjct: 116 YKQDKTPVNVNGCVSAGVGERLHDETLFTEMVKAPVPPHDLALKVNGDSMEPMFKDGEII 175 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIA 216 + + G + + K + + L+SLN Y + + Sbjct: 176 FVEKTHNIKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKEYRDLHFYRNESVRLVG 233 Query: 217 RIL 219 +++ Sbjct: 234 KVI 236 >gi|302343044|ref|YP_003807573.1| phage repressor [Desulfarculus baarsii DSM 2075] gi|301639657|gb|ADK84979.1| putative phage repressor [Desulfarculus baarsii DSM 2075] Length = 249 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 63/237 (26%), Gaps = 24/237 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +I + + E A + ++ ++ + R PS E +++ Sbjct: 14 MLPL-PPEIGDRVKAARESFGYNQKDFAELLAIGQSTLSRIENGE-----RPPSPELLYR 67 Query: 61 ILAAT----------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + C + D + + G Sbjct: 68 LALKFPSVDLRELLVGYPSCHICDNEPQLVINVLENDLATGQDIAAADYLAVPLVDGKIA 127 Query: 111 TGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 G V + + K SM P G ++++ G+ Sbjct: 128 AGLGSVVWEDVQSVVLACRAELGNKRHLVSVKVCGDSMSPTVPDGATVVIDRDDWRPSGN 187 Query: 170 ---RLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIE--WIARILW 220 I+ + G K L + ++S N YP +D+ I R++W Sbjct: 188 RRHIWAIRDQWGGAAIKRLFKVDDG-LLVISDNFDQYPPQPAWTADLRKLVIGRVVW 243 >gi|148549337|ref|YP_001269439.1| putative phage repressor [Pseudomonas putida F1] gi|148513395|gb|ABQ80255.1| putative phage repressor [Pseudomonas putida F1] Length = 273 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 72/266 (27%), Gaps = 58/266 (21%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW------------------ 52 + + + NL+ + L++ +G+ + + + + Sbjct: 5 DRVIARMKELNLSSTDLSKLSGVSKATVSFWINGTNGAKGKNLLALAKALECSAEWLSDG 64 Query: 53 ---PSTES---------------------------------IFKILAATNETICQLLDLP 76 P+ E+ + A + Q Sbjct: 65 TGQPTDENSPSVAASSTAELVAQMLASKAGKNLSEKAREVMLAAAAEADSPDRGQEYLPS 124 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 ++E IP + G + + N V EI Y + Sbjct: 125 AYSSLKPNQEEILIPQYDVRAAMGHGQVPADY--SEAVRNLVVREEILREKGVTYTSPSA 182 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 SM D++I++ I G+ + + ++ K ++ L+ Sbjct: 183 LAMITGWGQSMEGTINDKDLVIVDRGISEFIGEGIYVITWHQELYIKRMMRLDEDHFRLI 242 Query: 197 SLNCCYPVDTVEMSDIEWIARI--LW 220 S N Y T + D+ A++ +W Sbjct: 243 SDNQHYENQTARIDDVTVHAKVLLIW 268 >gi|332653673|ref|ZP_08419417.1| repressor LexA [Ruminococcaceae bacterium D16] gi|332516759|gb|EGJ46364.1| repressor LexA [Ruminococcaceae bacterium D16] Length = 205 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 67/225 (29%), Gaps = 32/225 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + + +KI++ I H PS + GL P++ + + Sbjct: 1 MKTLTPKQQKIYDYILDFTAEHGYPPSVREIGAAVGLKSPSTVHFHLKG----------L 50 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E I+ A +T L E + S + Sbjct: 51 EEAGVIVKAEGKTRAISLPGVSPRPVAEETDPHANQIPVV----GNVAAGSPILAEECIE 106 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + + + + SML GD+++++ + G ++ Sbjct: 107 DYLTFDTEG--------LSGEHFALRVRGESMLGAGILPGDLVVVHRQSEAQSGQIVVAL 158 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L R + LM N Y + + + + +++ Sbjct: 159 F-EDEATVKTLRRR-DGKVWLMPANDEYQPI--DGTKAQILGQVV 199 >gi|293376443|ref|ZP_06622675.1| repressor LexA [Turicibacter sanguinis PC909] gi|325845049|ref|ZP_08168365.1| repressor LexA [Turicibacter sp. HGF1] gi|292644952|gb|EFF63030.1| repressor LexA [Turicibacter sanguinis PC909] gi|325488925|gb|EGC91318.1| repressor LexA [Turicibacter sp. HGF1] Length = 215 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 65/226 (28%), Gaps = 25/226 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54 M + + I + I ++ PS + GL T+ N+ + +G R Sbjct: 1 MKPITKRQQAILDFIKAEIDKRGYPPSVREIGIAVGLSSTASVHNQLNQLEKKGFIRKDK 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +T I L + S + K E + P + N Sbjct: 61 ---------STTRGIVILANETESKAAKNDSKIIEFKSVVNVPVIGKVTAGMPIEAIENP 111 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + +P P N SM+ GD +I+ + GD ++ Sbjct: 112 DDFFPLPTHLIPSN------QTVFMLNVHGDSMINAGIHDGDQIIVQQQQDAHNGDIVVA 165 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K I L N +D+ + +++ Sbjct: 166 MLDDHEVTVKRFFKES-GHIRLQPENDLLEPII--ANDVYIVGKVI 208 >gi|145632034|ref|ZP_01787780.1| putative prophage repressor CI [Haemophilus influenzae R3021] gi|144982305|gb|EDJ89901.1| putative prophage repressor CI [Haemophilus influenzae R3021] Length = 218 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58 + E I E+ ++ LA + ++ R P E I Sbjct: 4 LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A N L ++ D +E KE P +G + D + + + Sbjct: 59 SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 I S + + SMLP + +GD+++++ I G + Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165 Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216 + K + +L+ LN +P + +I I Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209 >gi|13431613|sp|O86948|LEXA_THENE RecName: Full=LexA repressor gi|3282090|emb|CAA07513.1| LexA repressor [Thermotoga neapolitana] Length = 197 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 38/224 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + K+ + I+ E++ PS +AR+ + P R Sbjct: 1 MKDLTAKQRSVLIFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + P + Sbjct: 43 -------QLHLVALEKKGYIERKNGKPRAMRVTKSVKNRVPLIGEIRAGEKKEAIEYLED 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + VP + + + SM GD++++ GD + Sbjct: 96 YIEVPGSFLSSGY------EHFLLRVKGESMIEEHICDGDLVLIRRQDWAQNGDIV-AAM 148 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K +RG ++L N ++ + +++ Sbjct: 149 VEGEVTLKKFF-QRGEMVELRPANKEMSPMFFRADRVKILGKVV 191 >gi|295425189|ref|ZP_06817892.1| repressor LexA [Lactobacillus amylolyticus DSM 11664] gi|295064965|gb|EFG55870.1| repressor LexA [Lactobacillus amylolyticus DSM 11664] Length = 207 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 58/223 (26%), Gaps = 39/223 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES 57 +I + I E P+ + L TS ++ +R G+ Sbjct: 8 KQLEILQYIYDTVEDRGFPPTVREICSAVNLSSTSTVHGHLSRLERKGL----------- 56 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + K + KEIP++ +G + + Sbjct: 57 LIKDATKPRAIEITKKGREELGIKP-----KEIPVVGVVTAGQPI------LAVEDIDDY 105 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P A K SM+ GD +I+ + G+ ++ Sbjct: 106 FPLPPDL------KADAGDLFMLKVHGESMINAGILNGDNVIVRKQSSASNGEIVVAMTE 159 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + + + +++ Sbjct: 160 DNEATVKRFYKEK-GHYRLQPENDTMAPIILSK--VSILGKVV 199 >gi|273809592|ref|YP_003344830.1| cI repressor protein [Aggregatibacter phage S1249] gi|261410499|gb|ACX80330.1| cI repressor protein [Aggregatibacter phage S1249] Length = 219 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 13/212 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + LT LA K + + + + PS +I ++ + Sbjct: 10 VKKARNAAGLTQEALADKLNMTKANVSAMENGRTT-----PSFINILEMATLAGIPLP-H 63 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 ++ ++ +KE I + + G G N + + GI+ Sbjct: 64 VEDNELTELSSAQKEDTIIIPEYQARAECGQGFDGNDDVANIAGGLPFSRKQLASLGIH- 122 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + SM P G ++L+ S G I V K L R Sbjct: 123 -EKDACIIYAMGDSMSPTIENGATVMLDLSQTTPIEGAVFAIIRTGNGTVIKRLRRGADR 181 Query: 192 SIDLMSLN---CCYPVDTVEMSDIEWIARILW 220 + S N YP + I R++W Sbjct: 182 TWLYSSDNVDKNKYPDL-FSFEEDRIIGRVVW 212 >gi|306827184|ref|ZP_07460474.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|304430640|gb|EFM33659.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 245 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 65/243 (26%), Gaps = 39/243 (16%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +I + + +T LA+ G + + + R I K A Sbjct: 4 LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGN-----RQLDEVDIRKYAKALKIE 58 Query: 69 ICQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 QL D S + + N + Sbjct: 59 PQQLFDYSSSPTNPQVELIPSTLQKINSTSSQLEHSRQIIVLDTAETLLEQQKEIKNNED 118 Query: 117 TVGVPEIRSPHNGIYAIQ-------------------TQDTRHKTQDTSMLPLYRKGDIL 157 T+ + ++ + D SM P Y GD + Sbjct: 119 TIAELFSYNYYDHAASAGTGQYLNDVQVEKIELPVDYDADFVIPVYGDSMEPKYHSGDYV 178 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIA 216 + ++++ GD + GD K L+ + L SLN Y ++ D I Sbjct: 179 FVKLSVELTDGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNSKYEDIPIDRDSDFRIIG 236 Query: 217 RIL 219 ++ Sbjct: 237 EVM 239 >gi|289706436|ref|ZP_06502794.1| repressor LexA [Micrococcus luteus SK58] gi|289556931|gb|EFD50264.1| repressor LexA [Micrococcus luteus SK58] Length = 238 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 59/226 (26%), Gaps = 23/226 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--RWPSTE 56 ++I + I H PS + AGL S + +R G R+ R + E Sbjct: 18 QRRIVQTIRDAIADHGYPPSMREIGDAAGLASLSSVTHQLGRLERHGYIRRDPGRPRALE 77 Query: 57 SIFKILAAT--NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + P V Sbjct: 78 VLRDVDGTPLGEAASPAAAPSSQVSAIPAWHTGADGADSVPVPWVGRIAAGGPVLAEQQV 137 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + + +P + + + + SM+ GD +++ GD + Sbjct: 138 EDVMAIPRRLTG-------EGELFMLRVTGDSMVDAAICDGDWVVVRRQETAENGDIVAA 190 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K R L+ N Y + + + R++ Sbjct: 191 LLD-DEATVKTFRRR-DGHTWLLPQNTAYEPILGDHA--TVMGRVV 232 >gi|213031120|emb|CAR31457.1| hypothetical protein [Streptococcus pneumoniae] Length = 227 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 20/220 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R E L+ S LA G+ S+ + + P+ ++ K+ N + Sbjct: 7 LKRKRESQGLSQSQLASSLGISRASYFNWESGKTK-----PNQNNLSKLSEILNVDLRYF 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + E+ + ++ V + ++ + Y Sbjct: 62 ESEYEIVEIYLKLTERNQEATLHYATELLNKQNAKVVDIPQLFAYKVYEKLSAGTGTAYF 121 Query: 133 IQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 D SM P Y G + ++ G + G Sbjct: 122 DDGNYDTVYFDHHFDYDFASWVFGNSMEPTYENGSVALIKQTGFDYDG-AIYAIDWDGQT 180 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I +I+ Sbjct: 181 YIKKVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 219 >gi|330685320|gb|EGG96980.1| repressor LexA [Staphylococcus epidermidis VCU121] Length = 207 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 59/227 (25%), Gaps = 34/227 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53 M + +I++ I ++ + PS + GL ++ + E R P Sbjct: 1 MRELTKRQSEIYDYIKQIVQSKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIKRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +I+ + P + N Sbjct: 61 TKPRAIEIV------------------SEQLNDNISMEETIHVPVIGKVTAGIPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +PE + + + SM GD +I+ S GD ++ Sbjct: 103 IEEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIV 157 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + ++ + +++ Sbjct: 158 AMTEDDEATVKRFYKEKN-RYRLQPENSTMDPIYL--ENVIVVGKVI 201 >gi|116620617|ref|YP_822773.1| LexA repressor [Candidatus Solibacter usitatus Ellin6076] gi|116223779|gb|ABJ82488.1| SOS-response transcriptional repressor, LexA [Candidatus Solibacter usitatus Ellin6076] Length = 207 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 58/215 (26%), Gaps = 26/215 (12%) Query: 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K++ + I + + + +AR L S ++ K ++ Sbjct: 7 QKQVLDFIGNFVDENGYCPSYEEIARGLELA-------------------SLATVHKHIS 47 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 S K + P G G V E+ Sbjct: 48 VLEAKSYLKRGFNQSRSLELTPKYVQEQRRTRPAIAEIPML--GRIAAGLPVEAVEQREV 105 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + +A + + SM+ GD+++L Q GD ++ D Sbjct: 106 LNFAD--FAGDGNTFALEVRGNSMIDDHICDGDVILLERVTQARDGDIVVALVAGSDTTL 163 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 K +I L N V D++ R Sbjct: 164 KRFYRESADTIRLQPANAALKPILVPARDVQIQGR 198 >gi|289624318|ref|ZP_06457272.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647701|ref|ZP_06479044.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330865945|gb|EGH00654.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 243 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y + G + + Sbjct: 65 GSKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRMPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231 >gi|307729525|ref|YP_003906749.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1003] gi|307584060|gb|ADN57458.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1003] Length = 220 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 19/213 (8%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSA-------NSAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I + + L P G G+ Sbjct: 54 GVIELAAGASRGI-----RLVPPPEFGQDGGQHQFTLPHPALMQLSLPLVGRVAAGSPIL 108 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 109 AQEHIAQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKRSEAKDGQIIIAR- 167 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 D+ K L R I+L++ N Y VE Sbjct: 168 LGDDVTVKRLKRRPNG-IELIAENPDYENIFVE 199 >gi|66395466|ref|YP_239823.1| ORF016 [Staphylococcus phage 2638A] gi|62635893|gb|AAX91004.1| ORF016 [Staphylococcus phage 2638A] Length = 206 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 24/212 (11%), Positives = 68/212 (32%), Gaps = 18/212 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + +++++ LA+K G +S ++ ++ + + S + ++ + + Sbjct: 4 KNLKYLRKKYDMEQIDLAKKLGRKSASSISEWEKGKYTPKMKTLS--ELARLFNVSINDL 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + T + + N +P + Sbjct: 62 MEKDLSNTKPQIDTLPVTAIPVVAKISAGLPI-------YTEENIIEYTYIPSQMTKGG- 113 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + K SM +R+GD++++ V G ++ + K + Sbjct: 114 -----KELFGLKVSGDSMDKEFREGDVVVVEKDSVVENGQIGVVNVNGYNATVKRIRYNE 168 Query: 190 GRSIDL-MSLNCCYPVDTVEMSD-IEWIARIL 219 + I L S N + D I+ + +++ Sbjct: 169 DKIILLPESNNSDHLPQVYTNDDEIKVVGKVV 200 >gi|322617194|gb|EFY14100.1| hypothetical protein SEEM315_09290 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322624873|gb|EFY21702.1| hypothetical protein SEEM973_01827 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322634603|gb|EFY31336.1| hypothetical protein SEEM201_20181 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639314|gb|EFY36006.1| hypothetical protein SEEM202_09469 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322646169|gb|EFY42684.1| hypothetical protein SEEM054_21956 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322683449|gb|EFY79463.1| hypothetical protein SEEM180_09486 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|323224557|gb|EGA08838.1| hypothetical protein SEEM0055_08821 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323258807|gb|EGA42463.1| hypothetical protein SEEM8283_10719 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 208 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 18/211 (8%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 ++ LT LA G + R PS E I I+ L Sbjct: 1 MKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLSSDG 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAI 133 D + P + F GN + + EI Sbjct: 56 MVDYPDSNLNNVSSPRPHTE---IRRFPLISWVSAGNWCEAIEPYQLREIEVWPETTAHA 112 Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISR 188 + + SM +G ++++ AI+ G ++ + K I Sbjct: 113 SERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKYIVD 172 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ L LN Y + + + I ++ Sbjct: 173 AGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 201 >gi|268679524|ref|YP_003303955.1| peptidase S24/S26A/S26B, conserved region [Sulfurospirillum deleyianum DSM 6946] gi|268617555|gb|ACZ11920.1| Peptidase S24/S26A/S26B, conserved region [Sulfurospirillum deleyianum DSM 6946] Length = 219 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 64/213 (30%), Gaps = 9/213 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +KI + + + +A G++ + K R + P E + Sbjct: 9 QKIKDILSEELGERKVFDKDVAEALGINQLTLATMKN-----RAKLPYKEILEFCAKRKI 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 L D + K + + +GG G + + + E Sbjct: 64 SINWLLFDQFVESLQAQTDKFARVHYFRDIYASAGG----GALNEEEEGEMMYLDEEIVQ 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 G + SM P GD++ ++ + + + K L Sbjct: 120 KLGGLGMIKHIQAINVLGDSMEPTLFSGDVVFIHKEYTNARKAGIYVVSTPAGLFIKRLH 179 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ L+S N Y + ++ D+ + +++ Sbjct: 180 VHANGTVALVSDNEAYAPEVMQAEDVNVLGKVV 212 >gi|116494275|ref|YP_806009.1| LexA repressor [Lactobacillus casei ATCC 334] gi|191637610|ref|YP_001986776.1| LexA repressor [Lactobacillus casei BL23] gi|227534426|ref|ZP_03964475.1| repressor lexA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239629659|ref|ZP_04672690.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065783|ref|YP_003787806.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|122264295|sp|Q03B55|LEXA_LACC3 RecName: Full=LexA repressor gi|229621217|sp|B3WC17|LEXA_LACCB RecName: Full=LexA repressor gi|116104425|gb|ABJ69567.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|190711912|emb|CAQ65918.1| LexA repressor [Lactobacillus casei BL23] gi|227187933|gb|EEI68000.1| repressor lexA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239528345|gb|EEQ67346.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438190|gb|ADK17956.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] gi|327381661|gb|AEA53137.1| LexA repressor [Lactobacillus casei LC2W] gi|327384828|gb|AEA56302.1| LexA repressor [Lactobacillus casei BD-II] Length = 208 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 58/218 (26%), Gaps = 33/218 (15%) Query: 7 KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K+I ++I E H P+ + + GL +S ++ L Sbjct: 11 KQILQSIYDAIEDHGYPPTVREIGKSVGLSSSS-------------------TVAAYLEK 51 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPE 122 D ++ + G + N + VP+ Sbjct: 52 LLAAGLIAKDPAKPRTLEVTSAGRDFIGVQDHGIPIVGTVAAGVPITAIENIDDYFPVPD 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 YA + + Q SM+ + GD +I+ G ++ + Sbjct: 112 DL-----PYAAD-ELFMLRVQGNSMIKIGILDGDQIIVKKQNDAENGQIVVAMTEEDEAT 165 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N D+ + ++ Sbjct: 166 VKRFYKEKNG-IRLHPENDSMDDMFFP--DVTILGIVV 200 >gi|282850224|ref|ZP_06259603.1| repressor LexA [Veillonella parvula ATCC 17745] gi|282579717|gb|EFB85121.1| repressor LexA [Veillonella parvula ATCC 17745] Length = 223 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%) Query: 5 SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I + I D + + T + GL TS +S +E R P+ Sbjct: 11 KQRRILDFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +L T +I + S + G G V Sbjct: 71 TVLEDTKPSISVADNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + Q SM+ + +GD+LI+ N GD ++ + Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218 + K I L N + V+ IE I + Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219 >gi|154497015|ref|ZP_02035711.1| hypothetical protein BACCAP_01308 [Bacteroides capillosus ATCC 29799] gi|150273414|gb|EDN00542.1| hypothetical protein BACCAP_01308 [Bacteroides capillosus ATCC 29799] Length = 205 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 67/225 (29%), Gaps = 32/225 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M S ++I++ I H PS + GL P++ + + E Sbjct: 1 MRVLSPKQQQIYDYIVSFQADHGYPPSVREIGEAVGLKSPSTVHFHLKGLEEKG------ 54 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + I +P++ +GS + Sbjct: 55 --LIIKAEGKTRAITVSGSAGRPIAEEENPSANRVPVVGNVAAGSPILAEEC------IE 106 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + + K + SML GD+++++ + + G+ ++ Sbjct: 107 DYLTFDTGG--------LAGEHFALKVRGESMLGAGILPGDLVVVHRQPEAHSGEIVVAL 158 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + LM N Y + + E + +++ Sbjct: 159 F-EDEATVKTLRWK-DGHPWLMPENPDYQPI--DGAGAEILGKVV 199 >gi|238019292|ref|ZP_04599718.1| hypothetical protein VEIDISOL_01156 [Veillonella dispar ATCC 17748] gi|237863991|gb|EEP65281.1| hypothetical protein VEIDISOL_01156 [Veillonella dispar ATCC 17748] Length = 223 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%) Query: 5 SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I + I D + + T + GL TS +S +E R P+ Sbjct: 11 KQRRILDFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +L T +I + S + G G V Sbjct: 71 TVLEDTKPSISVDGNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + Q SM+ + +GD+LI+ N GD ++ + Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218 + K I L N + V+ IE I + Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219 >gi|238898159|ref|YP_002923840.1| putative phage repressor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465918|gb|ACQ67692.1| putative phage repressor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 233 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 71/228 (31%), Gaps = 22/228 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + T LA+K + +S + G E S++ IF I Sbjct: 8 ERLKLAMKEAGYTQGSLAKKVNMAQSSVWRLVSGGGE------SSKKIFPIAQILGVNPA 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSPHN 128 L + + V+P ++ + V P + + Sbjct: 62 WLAEGVGEMRPHLNTSQSFSSFDTVAGYSLNQEVQKEVYPLKIYHRIDGVLSPSVGGEKD 121 Query: 129 GI--YAIQT-----------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + QD SM P+ + ++I +++ + ++ Sbjct: 122 FEVMFWLPKVVLMQTNASIDDSIAVVAQDNSMSPIINEKSMVIFDTSYKEIKNGKIYAIS 181 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 G + + L I L S N YP V M+++ I ++ + S Sbjct: 182 FGGISMFRTLFVLPEEKIRLKSHNSADYPEVIVPMNELVVIGKVYYVS 229 >gi|296117730|ref|ZP_06836314.1| repressor LexA [Corynebacterium ammoniagenes DSM 20306] gi|295969461|gb|EFG82702.1| repressor LexA [Corynebacterium ammoniagenes DSM 20306] Length = 235 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 61/220 (27%), Gaps = 16/220 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 ++I E I PS + GL TS + +E + R P+ Sbjct: 20 QRRILEVIKDAVVLRGYPPSIREIGDAVGLQSTSSVAYQLNQLEQKGFLRRDPNKPRAVD 79 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + + + + + + P + + N + Sbjct: 80 LRQFAMDDDPKPGRKAAAASTEEDALPETASGVNYIPVVGRIAAGAPITAEENVDAYYPL 139 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + + K SM GD +I+ S GD + + Sbjct: 140 PDEIVG-------KGELYMLKVVGESMKDAAILDGDWVIIRSQPTAESGDFVAALLDNEE 192 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L+ N + + + +++ Sbjct: 193 ATVKEFH-QDSSGIWLLPHNEAFAPI--PGDNATIMGKVV 229 >gi|307721127|ref|YP_003892267.1| phage repressor [Sulfurimonas autotrophica DSM 16294] gi|306979220|gb|ADN09255.1| putative phage repressor [Sulfurimonas autotrophica DSM 16294] Length = 219 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 62/213 (29%), Gaps = 9/213 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I I + +A G+ +F K+ RN+ P E + + Sbjct: 9 EEIKSIISDEIAPKKVFDKDVAAALGISQMNFATMKK-----RNKIPFNELLDFCAKRSI 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 L K + + +GG D + Sbjct: 64 SINWLLYGQSPESLVEATNKFYMVKYFSDVNASAGGGSDIECEEIEELEIPEQFVFMLGG 123 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + SM P + DI+ +N + + + K + Sbjct: 124 EREL----QNIEAINVSGDSMEPTFSYNDIVFINRSKTDINRGGIFTIRTEAGLFIKRVQ 179 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 R +D++S N Y T++ + +E I R++ Sbjct: 180 KRIDGKLDVISDNSIYNTQTLDANQVEVIGRVV 212 >gi|229588706|ref|YP_002870825.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229360572|emb|CAY47429.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 244 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 73/236 (30%), Gaps = 33/236 (13%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +R ++P+ L R+ G+ ++ ++ G+ PS + I +I + QL Sbjct: 10 LRELLDRDRISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISRIAEYFRVSTDQL 65 Query: 73 LDL------PFSDGRTTEKKEKEIPLLYF-----PPSGSGGFFDSGVFPTGNKWNTVGVP 121 + K+I L S F G+ + Sbjct: 66 RGRAAVGALRDDGRDPMHSELKDISLWDDDTPVNDDEVSIPFLREVELAAGSGRFVIEER 125 Query: 122 EIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---- 171 E S G +++ + SMLP+ R G + +N+ GD + Sbjct: 126 EKASLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKSGI-GDIVDGDL 184 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIEWIARILWA 221 G + K L I L S N ++ I + + W Sbjct: 185 YAINHNGQLRVKQLYRLPSG-IRLRSFNRDEHPDEDYSFQDIQDEQISILGHVFWW 239 >gi|56551095|ref|YP_161934.1| LexA repressor [Zymomonas mobilis subsp. mobilis ZM4] gi|241761333|ref|ZP_04759421.1| SOS-response transcriptional repressor, LexA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753248|ref|YP_003226141.1| LexA repressor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|61213251|sp|Q5NR31|LEXA_ZYMMO RecName: Full=LexA repressor gi|56542669|gb|AAV88823.1| SOS-response transcriptional repressor, LexA [Zymomonas mobilis subsp. mobilis ZM4] gi|241374240|gb|EER63737.1| SOS-response transcriptional repressor, LexA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552611|gb|ACV75557.1| SOS-response transcriptional repressor, LexA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 217 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 53/220 (24%), Gaps = 10/220 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + I ++PS K LD S + R R + Sbjct: 1 MLTRKQHDLLLFIHNRLSVSGISPSFEEMKLALDLKSKSGIHRLIKALEERGFIRRLPNR 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 A + + K + P P Sbjct: 61 ARALEVIRLPEDKTEIQKKISRDYTPPKADNDVIEIPLHGRIA---AGLPIEALEGQ--- 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 Y + SM+ GD +I+ + + G+ ++ D Sbjct: 115 --SHLAVPPSYLGSGAHYALEVAGDSMVDAGIFDGDYIIVRQTDEAHEGEIVVALIDNSD 172 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K GR + L N Y + S I R++ Sbjct: 173 ATLKYFHR-EGRMVRLDPANRAYAPMRYDASRIGIQGRLV 211 >gi|329929059|ref|ZP_08282861.1| putative repressor LexA [Paenibacillus sp. HGF5] gi|328937048|gb|EGG33477.1| putative repressor LexA [Paenibacillus sp. HGF5] Length = 218 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 59/212 (27%), Gaps = 25/212 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + +R LT LA L + + SI KI + Sbjct: 17 IAKNLRTIIKRKGLTQKELAEGTDLSTSVISDYLNEKTLATP-----GSIQKIADFLKVS 71 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + T + + I P G+ N + V P Sbjct: 72 KSE--------IDPTFQPKVNITNNNLIPLIGTICAGDGILAEQNIEDYVFYPFPGRKQP 123 Query: 129 GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV-NCGDRLLI-KPRTGDIVAKVL 185 + + SM+ GDI+ + A G + + + + K + Sbjct: 124 D--------YALRVKGDSMINAGIEDGDIVYMKKASWADYNGQIVASVIDDSSEGMLKRI 175 Query: 186 ISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIA 216 G ++ L+ N Y + + ++ Sbjct: 176 KWTEGSATMQLIPENDNYEIRELPPNEFSICG 207 >gi|323703583|ref|ZP_08115228.1| transcriptional repressor, LexA family [Desulfotomaculum nigrificans DSM 574] gi|323531486|gb|EGB21380.1| transcriptional repressor, LexA family [Desulfotomaculum nigrificans DSM 574] Length = 213 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 22/224 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTE 56 M + +++ I ++ PS + GL +S + KR +G R T+ Sbjct: 1 MLNAREEEVLRVIIENVKQKGYPPSVREIGEAVGLSSSSTVHSYLKRLEQKGYLRRDPTK 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L + E+ I + +G N N Sbjct: 61 --PRAIEVVGMEYGNLNATNSTAKGKIFDNEELITVPILGQVAAGVPL----LAVENYDN 114 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + +P + + + SM +GDI+++ N GD ++ Sbjct: 115 RITLPRSFTGY-------GEFFMLTICGDSMIEAGILEGDIVLVRRQQSANNGDIVVALL 167 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + L N V+ ++ + +++ Sbjct: 168 D-DEATVKRFYKEKD-FVRLQPANSLLAPIMVKN--VKILGKVV 207 >gi|303257626|ref|ZP_07343638.1| prophage MuSo1, transcriptional regulator, Cro/CI family [Burkholderiales bacterium 1_1_47] gi|302859596|gb|EFL82675.1| prophage MuSo1, transcriptional regulator, Cro/CI family [Burkholderiales bacterium 1_1_47] Length = 230 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 63/217 (29%), Gaps = 13/217 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDP--TSFNKSKRF--GIEGRNRWPSTESIFKILAATN 66 + ++ + R + + L + G S + + G + I Sbjct: 10 DNLNTLVSRAG-SLAELNEQLGRKRNHPSLGQIRNRSDRGNGTFYEMGDKLARDIEEKLG 68 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + I L G + + V Sbjct: 69 LSYGWM---DTNHTPDDWPDDNIINLKRINIQACCGSAGIQNYEDDAFVEQIQVSRPWFQ 125 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 N + SM P +R GD+++++ + D + GD+ K + Sbjct: 126 ENISKIREQGYELITASGDSMEPTFRNGDLIVVDRQDRDLKRDGVFCVLVDGDLYVKRVQ 185 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE----WIARIL 219 ++ +S N Y + + ++E + R++ Sbjct: 186 RIP-GAVLFISDNSLYRPFEIPIKEVEFRLQVLGRVV 221 >gi|15674958|ref|NP_269132.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|13622103|gb|AAK33853.1| putative repressor protein - phage associated [Streptococcus pyogenes M1 GAS] Length = 248 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 70/249 (28%), Gaps = 59/249 (23%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + NLT LA + G ++ +K ++ R P I +I ++ Sbjct: 11 VKELRLSKNLTMEQLAEEVGKTKSTISKWEKGT-----RSPKIYEIEEIAKFFGVEPKKM 65 Query: 73 LDLPFSDGRTTEKK--------------------------------EKEIPLLYFPPSGS 100 + + + E++ + + Sbjct: 66 MFGDNPTPTAPQVELIPSTLQKINSTSSQLEHKRQLNVLDYAETQLEQQNTVEEPQATYY 125 Query: 101 GGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 + G T+ +P D SM P Y Sbjct: 126 TYNYYDHAASAGTGQYLNDVQVETIELPVDYDA----------DFVIPVYGDSMEPKYHS 175 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS- 210 GD + + ++++ GD + GD K L+ + L SLN YP ++ Sbjct: 176 GDYVFVKLSVELTDGDIGV-FEYYGDAYIKQLLINDKGAF-LHSLNQCGDYPDIPIDRDS 233 Query: 211 DIEWIARIL 219 D I ++ Sbjct: 234 DFRIIGEVM 242 >gi|283851548|ref|ZP_06368828.1| putative phage repressor [Desulfovibrio sp. FW1012B] gi|283573082|gb|EFC21062.1| putative phage repressor [Desulfovibrio sp. FW1012B] Length = 260 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 27/239 (11%) Query: 5 SHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSK--------RFGIEGRNRWPST 55 S K+ EA+ R+ + + LA G+ + N + F G S Sbjct: 21 SRKRFDEALGRLIQAVGGSDAGQLAVFLGISRQAINSAMAKNKIPPAWFVAVGEKTDISI 80 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK- 114 + + K + + ++ P + G Sbjct: 81 DWLVKGGGPMRQGNAEPFTAIS-CIVPADEPPYMSPEAAPTMGYTLVPKVKARLAAGTGS 139 Query: 115 -------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 G + SM P+ + D ++++ Sbjct: 140 LETEGVVVGYYAFKTDFLRRKGR---PKKMVLMDVAGDSMEPVLLESDTVLIDEGQNEII 196 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIARILWA 221 L ++ K L + L S N Y V+M+ + I R++W+ Sbjct: 197 PGGLFAIGIENEVFVKYLDRIP-GKLVLRSKNPAYMPIEVDMNGDLAMSVRIIGRVVWS 254 >gi|78777294|ref|YP_393609.1| putative phage repressor [Sulfurimonas denitrificans DSM 1251] gi|78497834|gb|ABB44374.1| putative phage repressor [Sulfurimonas denitrificans DSM 1251] Length = 219 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 9/195 (4%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 +A G+ +F K+ RN+ P E + + L Sbjct: 27 KDVADILGISQMNFATMKK-----RNKIPFGELLDFCALKSISINWLLYGQSPESLVEAT 81 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + I + +GG + + +P+ G Sbjct: 82 NRFFMIKYFSDVSASAGGGAELENESN----EMIKIPQEFVAMLGGERELKHIEAINVSG 137 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P + DI+ +N + + + K + R ID++S N Y Sbjct: 138 DSMEPTFSYNDIVFINRDKKDLQRGGIFTIRTESGLFIKRVQKRIDGKIDVISDNPIYST 197 Query: 205 DTVEMSDIEWIARIL 219 T+ + +IE I R++ Sbjct: 198 QTLNLGEIEVIGRVV 212 >gi|331701325|ref|YP_004398284.1| SOS-response transcriptional repressor, LexA [Lactobacillus buchneri NRRL B-30929] gi|329128668|gb|AEB73221.1| SOS-response transcriptional repressor, LexA [Lactobacillus buchneri NRRL B-30929] Length = 212 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 43/233 (18%) Query: 1 MTSFSHK------KIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIE 47 M+ ++ +I I P+ + L TS + +R G Sbjct: 1 MSKTTNDPQSKQYQILHFIWERVNEQGYPPTVREIGEAVHLSSTSTVHGHIARLERKGY- 59 Query: 48 GRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 I+ + + D + ++K+IP+L +G Sbjct: 60 -------------IVKDPAKPRALEVTSSGLDVLGMQPQQKQIPVLGTVTAG------EP 100 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 + + +P + + + + SM+ GD +++ + Sbjct: 101 ILAVQEATDYFPLPPALAHSDQPL------FMLQIRGESMINAGILDGDYVVVRKQESAD 154 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K L N + + + +++ Sbjct: 155 NGDIVIAMTDENEATCKRFFKESD-HYRLQPENDTMAPIILTK--VSILGKVV 204 >gi|257430904|ref|ZP_05607284.1| phage repressor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257278334|gb|EEV08970.1| phage repressor protein [Staphylococcus aureus subsp. aureus 68-397] Length = 242 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K L + Sbjct: 10 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 67 Query: 71 QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGG---------------FFDSG 107 + ++ +L + Sbjct: 68 GFDISKNRKIENNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDGYKESKLVSYIA 127 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 TG +I +T D SM P+ ++G + Sbjct: 128 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 187 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V SDI+ + +++ Sbjct: 188 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSDIKVMGKVV 241 >gi|119443658|ref|YP_918896.1| cI-like repressor [Staphylococcus phage phiPVL108] gi|257425606|ref|ZP_05602030.1| phage77ORF011 [Staphylococcus aureus subsp. aureus 55/2053] gi|257436507|ref|ZP_05612551.1| CI-like repressor [Staphylococcus aureus subsp. aureus M876] gi|282914289|ref|ZP_06322075.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus M899] gi|282924583|ref|ZP_06332251.1| CI-like repressor [Staphylococcus aureus subsp. aureus C101] gi|293503366|ref|ZP_06667213.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293510381|ref|ZP_06669087.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293530920|ref|ZP_06671602.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus M1015] gi|119225784|dbj|BAF41155.1| cI-like repressor [Staphylococcus phage phiPVL108] gi|257271300|gb|EEV03446.1| phage77ORF011 [Staphylococcus aureus subsp. aureus 55/2053] gi|257283858|gb|EEV13981.1| CI-like repressor [Staphylococcus aureus subsp. aureus M876] gi|282313418|gb|EFB43813.1| CI-like repressor [Staphylococcus aureus subsp. aureus C101] gi|282321470|gb|EFB51795.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus M899] gi|290920188|gb|EFD97254.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus M1015] gi|291095032|gb|EFE25297.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291466745|gb|EFF09265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] Length = 238 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K L + Sbjct: 6 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63 Query: 71 QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGG---------------FFDSG 107 + ++ +L + Sbjct: 64 GFDISKNRKIENNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDGYKESKLVSYIA 123 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 TG +I +T D SM P+ ++G + Sbjct: 124 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 183 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V SDI+ + +++ Sbjct: 184 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSDIKVMGKVV 237 >gi|325962853|ref|YP_004240759.1| SOS-response transcriptional repressor, LexA [Arthrobacter phenanthrenivorans Sphe3] gi|323468940|gb|ADX72625.1| SOS-response transcriptional repressor, LexA [Arthrobacter phenanthrenivorans Sphe3] Length = 244 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 57/220 (25%), Gaps = 12/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61 KKI E I R + PS + GL +S ++ + G R + Sbjct: 25 QKKILETIQRSVNENGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLR--RDPKRPRA 82 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGV 120 + + P + G G + Sbjct: 83 MEVLMPLTLDSGAAKTQGRPADAAAPGGATVTELPTALDTAMVPLVGRIAAGGPILADQL 142 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E P Q + + SM+ GD +++ GD + + Sbjct: 143 VEDVMPLPRQLVGQGELFMLRVAGDSMVDAAICDGDWVVVRRQADAANGDIVAALLD-DE 201 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K +R L+ N Y + + + +++ Sbjct: 202 ATVKTF-RQRDGHTWLLPQNTQYEPILGDHA--TIMGKVV 238 >gi|170289513|ref|YP_001739751.1| LexA family transcriptional regulator [Thermotoga sp. RQ2] gi|229470191|sp|B1L838|LEXA_THESQ RecName: Full=LexA repressor gi|170177016|gb|ACB10068.1| transcriptional repressor, LexA family [Thermotoga sp. RQ2] Length = 197 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 60/224 (26%), Gaps = 38/224 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + I+ E++ PS +AR+ + P R Sbjct: 1 MKDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + P + Sbjct: 43 -------LLHLIALEKKGYIERKNGKPRALRVSKSIRNKIPLIGEIRAGEKREAIEYLED 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + +PE K + SM GD++++ GD + Sbjct: 96 YIEIPESFLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVAAMV 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K +RG +++L N + ++ + +++ Sbjct: 150 D-GEVTLKKFY-QRGDTVELRPANREMSSMFFKAEKVKILGKVV 191 >gi|313889436|ref|ZP_07823084.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122268|gb|EFR45359.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN 20026] Length = 230 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 63/228 (27%), Gaps = 27/228 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + ++ ++ L + G++ + + ++ P+ + + K++ + Sbjct: 4 GEQLKAIRQKEKMSQEELGHQIGVNKMTISNWEQGKN-----SPNQKHLAKLVDIFQVSE 58 Query: 70 CQLLDLPFSDGRTTE-----------------KKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + KE ++ + + G Sbjct: 59 DYFNLYHAILVPYKQLNTHNQKKVVSFSQKLLAKETKVIAIPTSKKKLYPYRVYESLSAG 118 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 ++ + D SM P Y G+++++ G + Sbjct: 119 GGFSY--FGDGNYDEVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQEGFDYDG-AIY 175 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 176 AVEWDGQTYIKKVYREENG-LRLVSLNKKYSDKFAPFDENPRIIGKII 222 >gi|323356742|ref|YP_004223138.1| SOS-response transcriptional repressors [Microbacterium testaceum StLB037] gi|323273113|dbj|BAJ73258.1| SOS-response transcriptional repressors [Microbacterium testaceum StLB037] Length = 229 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 25/216 (11%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDP-TSF-NKSKRFGIEGRNRWPSTESIFKILAA 64 I E I R RH PS + GL +S ++ + + G R ++ Sbjct: 28 ILEVIQRSIARHGYPPSMREIGDAVGLKSLSSVTHQLNQLELSGYLRRDPGKTRA----- 82 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + L+DLP + + P + +P Sbjct: 83 ----MEVLIDLPGAAAENPADTAPALGDAALVPLVGRIAAGVPITADQQVEEIFPLPRQL 138 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + K SM+ GD +++ S G+ + G+ K Sbjct: 139 VG-------KGELFMLKVSGDSMIDAAICDGDWVVVRSQATAENGEIVAAMLD-GEATVK 190 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 R L+ N + + + R++ Sbjct: 191 TFRRR-DGHTWLLPRNSAFEPIL--GDEAVVLGRVV 223 >gi|309803432|ref|ZP_07697526.1| peptidase S24-like protein [Lactobacillus iners LactinV 11V1-d] gi|308164441|gb|EFO66694.1| peptidase S24-like protein [Lactobacillus iners LactinV 11V1-d] Length = 239 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 25/220 (11%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KKI + + H +T + LA K+ + T+ + R + E + L Sbjct: 14 RKKISYNLKKFM--HGMTQADLAEKSDIPLTTLSGYLREKST--PNAGNLEKLAIALNVK 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEI--------------PLLYFPPSGSGGFFDSGVFPT 111 I + E ++ P + Sbjct: 70 KSDIDPRYTFTDIMDFVEKAPLGEYISPVSNVEYLYNTDTVVKQIPLLGDIACGDPITAD 129 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR- 170 N + + + KT+ SM P G I+I+ V G+ Sbjct: 130 ENIEDYIP-----ETYTRGNVPSGTLFALKTKGHSMEPTIPDGSIVIIRQQPNVEDGEIA 184 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K + ++ L N Y + + Sbjct: 185 AVLVDDDARATLKRI-KHSNDAVILQPDNREYDPIVLTPN 223 >gi|222151788|ref|YP_002560946.1| hypothetical protein MCCL_1543 [Macrococcus caseolyticus JCSC5402] gi|222120915|dbj|BAH18250.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 209 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 73/220 (33%), Gaps = 20/220 (9%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +K+I I + + + + + +++ G+ T+ + +P + I + Sbjct: 1 MLGNKEIMAKNIKKFMKLNKIDRNKMSKDLGVSYTTLSDWINAKT-----YPRIDKIELM 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + L++ + IP+L +G + N + + Sbjct: 56 ANYFSISKSDLVEDSNDVDISNILPVISIPVLSKVSAGLPI------YAEQNIVDQTFIS 109 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + Y SM ++ GDI+I+ + G +++ + Sbjct: 110 KTLVKNGKEY------FGLIVSGDSMDKEFKDGDIVIVEYNSCIENGQIGVVQINGYNAT 163 Query: 182 AKVLISRRGRSIDL-MSLNCCYPVDTVEM-SDIEWIARIL 219 K + R I L S N + +I ++ R++ Sbjct: 164 VKRVRYNRDTIILLPESNNQKHQPQFYNKNDEIVFVGRVV 203 >gi|325288089|ref|YP_004263879.1| helix-turn-helix domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323543|gb|ADY31008.1| helix-turn-helix domain protein [Cellulophaga lytica DSM 7489] Length = 257 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 62/219 (28%), Gaps = 16/219 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + +T LA G+ + + P+ E++ ++ Sbjct: 4 IATNIRHLRSLKGVTQQSLAIDLGITRARVSSYEEGRS-----APTIETLIQLSDYFKLP 58 Query: 69 -----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVP 121 L + + P+ + + G ++ Sbjct: 59 IDVLVRNDLSKATDASFIEIGNQRVLFPIQVDDSNDNLIEIVPVAASAGYLAGYDDPEYI 118 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTGD 179 E S + + + SMLP+ ++ + + G ++ Sbjct: 119 EQLSKIKLPFLPTGKHRAFPIKGDSMLPMKNGAFVIGKFIEDRRDITSGKTYVLVTLNDG 178 Query: 180 IVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +V K + + ++ L+S N Y V + ++ I Sbjct: 179 MVYKRVYNQIEKNNTLKLVSDNNAYEPYEVAIDEVLEIW 217 >gi|319441578|ref|ZP_07990734.1| LexA repressor [Corynebacterium variabile DSM 44702] Length = 253 Score = 88.3 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 16/217 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I + I + PS + GL+ TS +E + + + + Sbjct: 44 QRRILDVIKDGIQFRGYPPSIREICDAVGLNSTSSVSYHLKELERKGYLRREGNKPRAVD 103 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 P + K +P F P S + + +P+ Sbjct: 104 IRGLDPADSTSKPGPKPASVLPKG--MPEPSFVPVLGQIAAGSPILAEQHVDGHFPLPQE 161 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + SM GD +++ S G+ + G+ Sbjct: 162 LVGG-------GELFLLQVVGESMQDAGILNGDWVVVRSQQTAELGEFVAAMID-GEATV 213 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K ++ L+ N + + + + R++ Sbjct: 214 KEFHP-SDGTVWLLPHNPLFEPI--RGDEAQILGRVV 247 >gi|291563430|emb|CBL42246.1| SOS-response transcriptional repressor, LexA [butyrate-producing bacterium SS3/4] Length = 205 Score = 88.3 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 35/220 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++I E I M + P+ + L TS + + G R T+ Sbjct: 9 KQREILEYIKEMILKKGYPPAVREICEAVHLKSTSSVHSHLESLEKNGYIRRDPTK---- 64 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + +++ D T ++ +P++ +G N + + + Sbjct: 65 ---------PRTIEILDDDFALTRRELVNVPVIGTVAAGVPI------LAEQNIEDYLPI 109 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P P+ + K + SM GD +I+ GD+++ Sbjct: 110 PAEILPN-------KEVFMLKVKGNSMIEAGIYNGDKVIVAKQPNAENGDKVVALVD-DS 161 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + +E + +++ Sbjct: 162 ATVKTFYK-ENGHFRLQPENSSMDPIIL--DQVEILGKVI 198 >gi|253699290|ref|YP_003020479.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774140|gb|ACT16721.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 209 Score = 88.3 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 57/215 (26%), Gaps = 21/215 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + I + LT A G+ + + GR R PS + + Sbjct: 7 HAETGVRIKKARLALGLTQKEFAASLGIVQGFLSGIE----TGRKR-PSDTLLIALSHTF 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L D + ++ F G + VP+ Sbjct: 62 GINAQWLHDGSGESFKNELAADQPKVSRAPLLDVIPDSFPDDP---GAVSRYISVPD--- 115 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKV 184 + M P R GD++I Q GD +++ R G+ + + Sbjct: 116 -------LPEGCYAIVCYGDFMSPTIRDGDVVIFRPESGQKKSGDIIIVHNRWGEPILRR 168 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + I L N Y I ++ Sbjct: 169 Y-RVKDDEIYLAPDNPAYAPFQ-PDDGTRTIGIVV 201 >gi|325912799|ref|ZP_08175178.1| peptidase S24-like protein [Lactobacillus iners UPII 60-B] gi|325477930|gb|EGC81063.1| peptidase S24-like protein [Lactobacillus iners UPII 60-B] Length = 230 Score = 88.3 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 19/231 (8%) Query: 4 FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K+I+ + ++ + + L G + + + R E + Sbjct: 3 LGNKEIFSQNLKYYMYKYGVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60 Query: 63 AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSG----------SGGFFDSGVF 109 + + D ++ + + + G Sbjct: 61 NIKKSDLVEKQTDEQIDISPVYNQLTDIRKHKVYSYAKQQLDEQTDNLNEHRSIYLVGSS 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 G + + + I A D + SM P I+ + + G+ Sbjct: 121 AAGLPLDYGDLDAELIDLSNIPA--KADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGE 178 Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + K + I L S+N Y + + +++ Sbjct: 179 IGIFEINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFNGEQVRILGKVV 229 >gi|170017347|ref|YP_001728266.1| LexA repressor [Leuconostoc citreum KM20] gi|226736103|sp|B1MZ70|LEXA_LEUCK RecName: Full=LexA repressor gi|169804204|gb|ACA82822.1| LexA repressor [Leuconostoc citreum KM20] Length = 211 Score = 88.3 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 55/220 (25%), Gaps = 28/220 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++ I + P+ + GL +S +R +G +++ + Sbjct: 7 KQIQVLRFIHEAQLNNGYPPTVREVGEAVGLSSSSTIHGHIERLVKKGYLLKDASKPRAR 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T+ + L + + + Sbjct: 67 AIEVTDSGLEALGVSTTPGRIPVLGQVTAGAPILAV--------------EEEATEFFPI 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + SM+ + GD +I+ + GD ++ + Sbjct: 113 PDNLMQF------DGDMFMLNVRGNSMINIGILDGDKVIVRKQDNADNGDVVVAMNDDDE 166 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N ++ + + +++ Sbjct: 167 ATVKRFFR-EADHFRLQPENDAMAPIILK--QVAILGKVI 203 >gi|256832286|ref|YP_003161013.1| SOS-response transcriptional repressor, LexA [Jonesia denitrificans DSM 20603] gi|256685817|gb|ACV08710.1| SOS-response transcriptional repressor, LexA [Jonesia denitrificans DSM 20603] Length = 241 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 13/227 (5%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPS 54 + ++ + I + + PS + R+ GL S K + +E R R P+ Sbjct: 13 APLTSRQRAVLACITQSLKDRGYPPSMREIGREVGLTSPSSVKHQLKVLEERGFVRRDPN 72 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGN 113 +++ E ++ E + + + S G G Sbjct: 73 RPRAIEVIPTPREKDTSSPSPDPGLHHSSRNTENVVMIPHGSRTSDLRPVPLVGRIAAGA 132 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 E + + SM+ GD +++ G+ + Sbjct: 133 PILADQDIEDVFTLPRQLVGDGELYMLRVSGESMVDAAICDGDFVVVRRQGVAENGEIVA 192 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L + LM N Y D E + +++ Sbjct: 193 AMID-GEATVKTL-KLKDGHRWLMPHNPLYDPIL--GDDAEILGKVV 235 >gi|197301717|ref|ZP_03166787.1| hypothetical protein RUMLAC_00443 [Ruminococcus lactaris ATCC 29176] gi|197299157|gb|EDY33687.1| hypothetical protein RUMLAC_00443 [Ruminococcus lactaris ATCC 29176] Length = 205 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I + I + P+ + L TS + + G R P+ Sbjct: 9 KQEEILQYIKDQILQRGFPPAVREICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + + P + N + Sbjct: 69 EILDDDFNLLRREMVQ--------------------VPIVGRVAAGEPILAQQNIEDYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 P Y Q K Q SM+ GD +++ A G++++ Sbjct: 109 FPAE-------YVSNKQLFLLKVQGESMVNAGILNGDYVLVEEAKTAENGEKVV-AMIED 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N V+ D+ + R++ Sbjct: 161 GATVKTFYREE-GVIRLQPENDFMDPIIVQ--DVVILGRVI 198 >gi|295696259|ref|YP_003589497.1| transcriptional repressor, LexA family [Bacillus tusciae DSM 2912] gi|295411861|gb|ADG06353.1| transcriptional repressor, LexA family [Bacillus tusciae DSM 2912] Length = 202 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 59/220 (26%), Gaps = 37/220 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSK-RFGIEGR-NRWPSTESIFK 60 + I + I + PS + L + + ++ R G R P+ + Sbjct: 7 QQDILDFIKKEVREKGYPPSVREIGEAVNLSSSATVHRHLGRLEQMGYIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + + + P + N + + Sbjct: 67 ILE---------------------EDAQTVGPVTMAPVVGRVTAGLPITAVENIEDYFPL 105 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + + SM GD++++ GD ++ G+ Sbjct: 106 PASWTGGDPV-------FLLRVVGDSMIEAGIFDGDLVVVRQQPTAENGDIVVAMTDEGE 158 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N + + + ++ Sbjct: 159 ATVKRFY-QEKDRIRLQPENSTMAPLYYKN--VTVLGLVI 195 >gi|323526205|ref|YP_004228358.1| LexA family transcriptional repressor [Burkholderia sp. CCGE1001] gi|323383207|gb|ADX55298.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1001] Length = 220 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 19/213 (8%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSA-------NSAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I + + L P G G+ Sbjct: 54 GVIELAAGASRGI-----RLLPPQEFGQDGTQHQFTLPHPSIMQLSLPLVGRVAAGSPIL 108 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 109 AQEHIAQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKRSEAKDGQIIIAR- 167 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 D+ K L R I+L++ N Y VE Sbjct: 168 LGDDVTVKRLKRRPNG-IELIAENPDYENIFVE 199 >gi|319948152|ref|ZP_08022314.1| LexA repressor [Dietzia cinnamea P4] gi|319438181|gb|EFV93139.1| LexA repressor [Dietzia cinnamea P4] Length = 235 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 22/220 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 K + I + PS + GL TS + +E + R P Sbjct: 26 QKSVLLHIHDTVKERGYPPSIREIGDAVGLQSTSSVAHQLRTLEKKGFLTRDPHKPRAVD 85 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + R + E + P + + Sbjct: 86 VHGVPGQKARGRRSPTSEVRRPSGAVE-----PVYVPVLGRIAAGGPILAEQAVEEVFPL 140 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + SM+ GD +++ + GD + G+ Sbjct: 141 PTDLVGS-------GDLFMLRVVGESMIDAAICDGDYVVVRRQNVADNGDIVAAMID-GE 192 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N + + +++ Sbjct: 193 ATVKTFRKDSTG-VWLLPHNPSFSPI--PGEHATILGKVV 229 >gi|300311389|ref|YP_003775481.1| SOS-response transcription repressor [Herbaspirillum seropedicae SmR1] gi|300074174|gb|ADJ63573.1| SOS-response transcription repressor (RecA-mediated autopeptidases) protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 55/216 (25%), Gaps = 22/216 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++I I E P + +A + G R+ + E Sbjct: 1 MLKLTARQEQILNLIKNAIENTGFPPTRAEIAAELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + I + L P G G+ Sbjct: 46 HLQALARKGAIEISPGTSRGIRLREPGGQAASRQMALPHPALMQLSLPLIGRVAAGSPIL 105 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K + SM GD+L + Q G ++ + Sbjct: 106 AQEHVEKTYQVDPAMFSGKPDYLLKVRGMSMRDAGILDGDLLAVRKTDQARNGQIVVAR- 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G I L N + V+ ++ Sbjct: 165 LADEVTVKRYQK-TGSVITLFPENPDFKPIIVKPNE 199 >gi|84393159|ref|ZP_00991923.1| putative transcriptional regulator [Vibrio splendidus 12B01] gi|84376211|gb|EAP93095.1| putative transcriptional regulator [Vibrio splendidus 12B01] Length = 227 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 59/204 (28%), Gaps = 30/204 (14%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 + L++ G+ ++ + G + + I K + T + +L Sbjct: 47 TDLSKALGVSASTIQTWRMRGKIPEDIFLKANEIAKSGSLTPKGYLEL-----KFFDIEV 101 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + S + E + + Sbjct: 102 SAGHGALVEKEEESSAMV-----------------FSERFIRQELGF-NPNNIFLMPVRG 143 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM+P + I+++N + D + + ++ K L I ++S N Y Sbjct: 144 DSMIPTLKNQSIVMVNR-VDGFSTDGIYVFRYDNRLMVKRLQFLPNG-IKVVSDNSAYEA 201 Query: 205 DTVEMSDI-----EWIARILWASQ 223 + +I E I ++W+ Q Sbjct: 202 WELGKEEIKGNDFEIIGEVVWSGQ 225 >gi|160938934|ref|ZP_02086285.1| hypothetical protein CLOBOL_03828 [Clostridium bolteae ATCC BAA-613] gi|158437897|gb|EDP15657.1| hypothetical protein CLOBOL_03828 [Clostridium bolteae ATCC BAA-613] Length = 236 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 56/221 (25%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I E I + P+ + L TS S +E + R P+ Sbjct: 41 KQQEILEYIKETILQKGYPPAVREICEAVHLKSTSSVHSHLSALEDKGYIRRDPTKPRTI 100 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL T + + P + + Sbjct: 101 EILDDTFNFNRREMVN--------------------IPLVGTVAAGEPILAEERIEDYFP 140 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 P P+ ++ K + SM+ GD LI+ G+ ++ Sbjct: 141 FPAEILPN-------SETFMLKVKGESMIGAGILPGDKLIVEQCPTAANGEIVVALVD-D 192 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N +E + +++ Sbjct: 193 SATVKRFYK-ENGHYRLQPENDAMEPII--TETVEILGKVI 230 >gi|37930231|gb|AAP76282.1| unknown [Pseudomonas sp. PCL1171] Length = 244 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 33/236 (13%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +R ++P+ L R+ G+ ++ ++ G+ PS + I +I L Sbjct: 10 LRELLDRDRISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISRIAEYFRVGTDYL 65 Query: 73 L------DLPFSDGRTTEKKEKEIPLLYF-----PPSGSGGFFDSGVFPTGNKWNTVGVP 121 + K+I L S F G+ + Sbjct: 66 RGRAAVGAQRDEGRDPMHSELKDISLWDDDTPVNDDEVSIPFLREVELAAGSGRFVIEES 125 Query: 122 EIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---- 171 E S G +++ + SMLP+ R G + +N+ GD + Sbjct: 126 EKASLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKSGI-GDIVDGDL 184 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIEWIARILWA 221 G + K L I L S N ++ I + + W Sbjct: 185 YAINHNGQLRVKQLYRLPSG-IRLRSFNRDEHPDEDYSFQDIQDEQISILGHVFWW 239 >gi|332342949|gb|AEE56283.1| repressor protein [Escherichia coli UMNK88] Length = 215 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 56/211 (26%), Gaps = 18/211 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ ++ LA G+ + R P+ E I +I+ A + Sbjct: 10 KQLMRAQGMSQDSLADLMGITKGGLSHWLNG-----RREPNLEDIARIMRALGRRQFTVT 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + P P N +T Sbjct: 65 HDGMVIDDSVSNTLPGAP----PRDLGSYPVVDWKDAVNNMEDTRR--STLPHVTTSVIC 118 Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISR 188 + SM G +++++ G ++ + G K L+ Sbjct: 119 SDDSYWLVAKGESMNAPQGLSIPAGTMILVDPHAPAIDGKLVIAQLEEGQTPTFKQLVID 178 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ + L SLN YP + + I ++ Sbjct: 179 GGQRL-LRSLNPLYPPIPMNPES-KIIGVVV 207 >gi|145636124|ref|ZP_01791794.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae PittHH] gi|145270646|gb|EDK10579.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae PittHH] Length = 218 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 68/224 (30%), Gaps = 34/224 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58 + E I E+ ++ LA + ++ R P E I Sbjct: 4 LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A N L ++ D +E KE P +G + D + + + Sbjct: 59 SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 I S + + SMLP + +GD+++++ I G + Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165 Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216 + K + +L+ N +P + +I I Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPFNPMFPTLSSLNQEIRIIG 209 >gi|304404437|ref|ZP_07386098.1| transcriptional repressor, LexA family [Paenibacillus curdlanolyticus YK9] gi|304346244|gb|EFM12077.1| transcriptional repressor, LexA family [Paenibacillus curdlanolyticus YK9] Length = 208 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 58/226 (25%), Gaps = 35/226 (15%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPS 54 + S+++ I E I PS + GL ++ + R +G R P+ Sbjct: 3 SKLSNRQQAILEFIKNEVRDKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGFIRRDPT 62 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +IL + P + T N Sbjct: 63 KPRAIEILDD-----------------DADTDSSFAMSFAKVPIVGKVTAGVPITATENI 105 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 + +P SM GD +I+ + GD ++ Sbjct: 106 EDFFPLPSHMVG-------DHDVFILSVMGESMIEAGIHDGDYVIVRQQPTASNGDIVVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + L N ++ + + +++ Sbjct: 159 MTEEDEATVKTFYKEKD-HVRLQPQNPTMEPILLKN--VTILGKVI 201 >gi|298484865|ref|ZP_07002964.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160552|gb|EFI01574.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320330710|gb|EFW86685.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330984512|gb|EGH82615.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009813|gb|EGH89869.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 243 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y + G + + Sbjct: 65 GPKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRMPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231 >gi|86606635|ref|YP_475398.1| S24 family peptidase [Synechococcus sp. JA-3-3Ab] gi|86555177|gb|ABD00135.1| peptidase, S24 (LexA) family [Synechococcus sp. JA-3-3Ab] Length = 218 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 13/196 (6%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 R+AG+ T+ + + P + KI ++ L+ S Sbjct: 24 AFGRRAGISDTALRSYLKGSV------PGIDKAVKIAQVGGVSLSWLITGEGSPRLEAGD 77 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + E + + + + + + + + + Q Sbjct: 78 AKTEYVYVPLVDVVASAGAG-ALVREESIESVLAFERNWLRAHLKG-NPDGLSLIRVQGD 135 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 SM P GD + + ++ G+ + + R G++ K L G + ++S N +P Sbjct: 136 SMSPTLEDGDWIFVERQKEL-GGEGIYVFQRDGELWVKRLQRLSGSRVKVISDNPRFPSF 194 Query: 206 TVEMSD----IEWIAR 217 V+ +D + I R Sbjct: 195 VVDCADPVNGLILIGR 210 >gi|70726569|ref|YP_253483.1| LexA repressor [Staphylococcus haemolyticus JCSC1435] gi|123762305|sp|Q4L648|LEXA_STAHJ RecName: Full=LexA repressor gi|68447293|dbj|BAE04877.1| SOS regulatory LexA protein [Staphylococcus haemolyticus JCSC1435] Length = 207 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 59/227 (25%), Gaps = 34/227 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53 M + +I++ I + + PS + GL ++ + E R P Sbjct: 1 MRELTKRQSEIYDYIKHVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIKRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +I+ + + P + N Sbjct: 61 TKPRAIEIV------------------SEQTNDAVNMEETIYVPVIGKVTAGIPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +PE + + + SM GD +I+ S GD ++ Sbjct: 103 IEEYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIV 157 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + I +++ Sbjct: 158 AMTEDDEATVKRFYKEK-TRYRLQPENSTMSPIYLDN--VTVIGKVI 201 >gi|323441303|gb|EGA98969.1| hypothetical protein SAO46_2737 [Staphylococcus aureus O46] Length = 213 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 72/211 (34%), Gaps = 19/211 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E+ + + + + GL T+ + +R + E++ KI N Sbjct: 12 LKYLMEKKSGSVKAFSEEIGLAYTTVRSILERGVFNAK-----VENVIKICNGLNIRPED 66 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 ++D+ + ++ + + + S G + N + + Sbjct: 67 IMDIKQTKAIESQLETLPVKKIPVVSKISAGMPI---YTEENLVDYIYFSTKNLNP---- 119 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 ++ + SM L+ +GD++++ V G ++ + K + G Sbjct: 120 --DKEEFGLQVSGDSMNKLFDEGDVVVVEKDSIVENGQLGVVMINGYNGTVKRV-RYNGD 176 Query: 192 SIDLMSL--NCCYPVDTVEMSD-IEWIARIL 219 I L+ N + D ++ + R++ Sbjct: 177 QIILIPESNNPNHYPQVYGKDDEVKIVGRVV 207 >gi|149276297|ref|ZP_01882441.1| transcriptional regulator [Pedobacter sp. BAL39] gi|149232817|gb|EDM38192.1| transcriptional regulator [Pedobacter sp. BAL39] Length = 258 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 20/224 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + ++ T A G+ + + E P + + KI + Sbjct: 3 NISANLKYLRKKKGHTQQQFADAMGIKRSLIGAYEEDRAE-----PKYDLLKKIAEYFDL 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF---PPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 TI + ++ +D + K + L + + Sbjct: 58 TIDEFINETVNDNWKPKPKSQGSNLRILSISVDKDDNENIEMVPVKASAGYLNGFSDPQY 117 Query: 125 SPHNGIYAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKP 175 + + + SMLP + G I++ L++ V G+ +I Sbjct: 118 IKELPKFQLPLPFLRQGTFRAFEIMGDSMLP-IQPGSIILAEYLDNWNDVKVGETYIIIS 176 Query: 176 RTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + +V K + + + L+S N Y TV DI I + Sbjct: 177 KNEGVVYKRAGNKFKENKELKLISDNKVYDPYTVSAEDILEIWK 220 >gi|295100758|emb|CBK98303.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 208 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 19/214 (8%), Positives = 51/214 (23%), Gaps = 18/214 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + LT +A + + ++ + R + K L T Sbjct: 2 GNYLADRRKALGLTQKEIAELVDVSEATVSRWESGE-IANMRRDRIAAYAKALKTTPS-- 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + S + P ++ N + + + + Sbjct: 59 --FIMTGDSADKELPAGATLYNAQNVAPLLGTVRAGMPMYAEENIEDYIPIRQT------ 110 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKG-DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM D +++ +V G ++ + K Sbjct: 111 ---DGAKYFWLNIRGDSMNAAGMDEGDQILVREQPEVENGQLAVVMVNGNEATVKYFRRE 167 Query: 189 RGRSI-DLMSLNCCYPVDTVEMSD--IEWIARIL 219 I S N + ++ + ++ Sbjct: 168 GDLVILTPKSFNPVHQPQIYDLKKMPVRIAGLVV 201 >gi|170692277|ref|ZP_02883440.1| transcriptional repressor, LexA family [Burkholderia graminis C4D1M] gi|170142707|gb|EDT10872.1| transcriptional repressor, LexA family [Burkholderia graminis C4D1M] Length = 220 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 67/213 (31%), Gaps = 19/213 (8%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSA-------NSAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I L F T + P + G G+ Sbjct: 54 GVIELAAGASRGIRLLPSQDFGQDGTQHQFTLPHPSIMQLSLPLIG-----RVAAGSPIL 108 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 109 AQEHIAQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKRSEAKDGQIIIAR- 167 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 D+ K L R I+L++ N Y VE Sbjct: 168 LGDDVTVKRLKRRPNG-IELIAENPDYENIFVE 199 >gi|148727133|ref|YP_001285627.1| putative cI repressor [Aeromonas phage phiO18P] gi|110349268|gb|ABG73156.1| putative cI repressor [Aeromonas phage phiO18P] Length = 238 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 20/211 (9%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79 AR+A + + KR+ EG P + + A T L+ Sbjct: 30 RAFARRADMSD---SGLKRYLYEGTI--PPIDRALNLARAGGVTFDWLVFGIGEAGSSAR 84 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------EIRSPHNGIYAI 133 ++ + G+ N P Sbjct: 85 TNPPIAPASDVQGFQVTEEFTTIPAYQVFASAGHGANITDEPLAEPMAFRTDWLRREGFD 144 Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + + SM P GD++++ D L + G + K L G + Sbjct: 145 PAKMAVIRAKGDSMEPTINDGDVILVRLKNGEAPRDGLYVLRLDGGLFVKRLQFDLGG-V 203 Query: 194 DLMSLNCCYPVDTV---EMSDIEWIARILWA 221 ++S N Y + E+++++ + R++WA Sbjct: 204 RIISDNPLYKSRDLSKAELAELDLVGRVVWA 234 >gi|294084070|ref|YP_003550828.1| LexA repressor [Candidatus Puniceispirillum marinum IMCC1322] gi|292663643|gb|ADE38744.1| LexA repressor [Candidatus Puniceispirillum marinum IMCC1322] Length = 211 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 61/223 (27%), Gaps = 26/223 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPST 55 M + ++ + + H++ PS + GL + ++ E R P+ Sbjct: 1 MLTRKQSELLDYLTTHLATHDVPPSFDEMRNALGLASKSGIHRLVSGLEERGYIRRLPNR 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 +IL + + + G G Sbjct: 61 ARAIEILRPAG-------------------EPSAMANAVAAAADIIALPFLGRIAAGTPI 101 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + P + + + SM+ +GD +++ A + G+ ++ Sbjct: 102 EALSDPTRQLEVPASMIGNGEHFALEIVGDSMIDAGILEGDTVVIERANTASHGEIIVAL 161 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K L+ I L + N Y +E + Sbjct: 162 INKQEATLKTLLKEP-GRIGLEAANPQYETRYFSTDAVEVQGK 203 >gi|261379287|ref|ZP_05983860.1| putative repressor protein [Neisseria subflava NJ9703] gi|284797724|gb|EFC53071.1| putative repressor protein [Neisseria subflava NJ9703] Length = 228 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL S + Sbjct: 18 QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPDS 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134 E + G+ I + Y I+ Sbjct: 73 EAPKATATDTLGNPVDIDEFVFVPRYDIQAAAGHGQLVGDEQPIFAMAFRRYWIENYVTR 132 Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N D L + +++ K L G Sbjct: 133 DIKNLSVISVKGDSMEGVLNDGDTILINHGQTT-PRDGLYVLRLNENLLVKRLQLIPGGI 191 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 ++++S N YP +++ D+ I R+ W Sbjct: 192 VNVISANEAYPTFEIDLKNPTDDVAIIGRVEW 223 >gi|87200194|ref|YP_497451.1| putative phage repressor [Novosphingobium aromaticivorans DSM 12444] gi|87135875|gb|ABD26617.1| putative phage repressor [Novosphingobium aromaticivorans DSM 12444] Length = 213 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 15/218 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+D + ++ + S ++R G + + R G R + + Sbjct: 2 DDARRALDELIQQRGVNYSSVSRLLGRNAAYIQQYIRR---GSPRQLDEQDRSVLARFFG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVGVPEIRS 125 + + + + +PLL S G ++ + + + Sbjct: 59 VD--EKVLGAPARRSGPVVELVHVPLLNVEASAGHGALAEMEAKSAQFGFDEKWLRRLTA 116 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKV 184 +I SM P GD ++++ Q D + + + K Sbjct: 117 SKASSLSI------IAVHGDSMEPTLHDGDEVMVDLGDGQSRLRDGIYVLRMDDMLSVKR 170 Query: 185 LISRR-GRSIDLMSLNCCYPVDT-VEMSDIEWIARILW 220 + G+ ++S N YP +E + + R+LW Sbjct: 171 IALEPQGKRASVLSDNPAYPSWRGLEKRTLNIVGRVLW 208 >gi|57866830|ref|YP_188488.1| LexA repressor [Staphylococcus epidermidis RP62A] gi|251810773|ref|ZP_04825246.1| LexA repressor [Staphylococcus epidermidis BCM-HMP0060] gi|282876227|ref|ZP_06285094.1| repressor LexA [Staphylococcus epidermidis SK135] gi|71153807|sp|Q5HPK2|LEXA_STAEQ RecName: Full=LexA repressor gi|57637488|gb|AAW54276.1| LexA repressor [Staphylococcus epidermidis RP62A] gi|251805701|gb|EES58358.1| LexA repressor [Staphylococcus epidermidis BCM-HMP0060] gi|281295252|gb|EFA87779.1| repressor LexA [Staphylococcus epidermidis SK135] gi|329725103|gb|EGG61597.1| repressor LexA [Staphylococcus epidermidis VCU144] gi|329735895|gb|EGG72174.1| repressor LexA [Staphylococcus epidermidis VCU028] gi|329736637|gb|EGG72903.1| repressor LexA [Staphylococcus epidermidis VCU045] Length = 206 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 31/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + +I++ I ++ + PS + GL ++ + Sbjct: 1 MRELTKRQSEIYDYIKKIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + + + E + P + N Sbjct: 50 ------LEEKGYIRRDPTKPRAIEIVSEQLDEVNVEETIHVPVIGKVTAGVPITAVENIE 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 158 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + +++ Sbjct: 159 TEDEEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VIVVGKVI 200 >gi|311030180|ref|ZP_07708270.1| SOS-response transcriptional repressor (RecA-mediated autopeptidase) [Bacillus sp. m3-13] Length = 203 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 55/219 (25%), Gaps = 34/219 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 + I + I + + PS + GL +S R +G R T+ Sbjct: 7 QQDILDYIKKEVQAKGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIRRDPTKPRA-- 64 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 E + P + N + +P Sbjct: 65 ------------------IEIMEDELVPKISAVNVPIIGKVTAGQPITAIENVEDYFPLP 106 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + A Q + SM GD +I+ N GD ++ + Sbjct: 107 D------RYVAPDEQVFMLEVMGDSMIEAGILDGDYVIVRQQQSANNGDIVVAMTEEDEA 160 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V + + +++ Sbjct: 161 TVKRFFKEKD-YIRLQPENSTLEPIIVRN--VSILGKVI 196 >gi|237797534|ref|ZP_04585995.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020384|gb|EGI00441.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 243 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + +Y + G + + Sbjct: 65 GPKHPNEPAHEHTAGDTRMVIQQTRNVLRGDVEIQIYMEVESTHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQTMGI--DPKSCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSAEDIDREKIRILGWIFWWS 231 >gi|330718868|ref|ZP_08313468.1| LexA repressor [Leuconostoc fallax KCTC 3537] Length = 211 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 59/220 (26%), Gaps = 28/220 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++ I P+ + GL +S +R +G + + + + Sbjct: 7 KQIQVLRFIHEAQTNKGYPPTVREIGEAVGLSSSSTIHGHIERLVKKGYLKKDTKKPRAR 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T + IP+L +G N + Sbjct: 67 AIEVT---------TSGLEILGVSTTPGRIPVLGVVTAGQPILAVE-----ENATEFFPI 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + + SM+ + GD +I+ + G+ ++ + Sbjct: 113 PDDLAQF------DGDLFMLNVRGDSMIDMGILSGDKVIVRKQDNADNGEVVVAMNEDNE 166 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N ++ + + +++ Sbjct: 167 VTVKRFFK-EADHYRLQPENTTMAPIILQS--VTVLGKVV 203 >gi|270157680|ref|ZP_06186337.1| putative phage repressor [Legionella longbeachae D-4968] gi|269989705|gb|EEZ95959.1| putative phage repressor [Legionella longbeachae D-4968] Length = 228 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 66/226 (29%), Gaps = 12/226 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59 M +KI I LT LA L + N +R + + Sbjct: 1 MDMSIKEKIGNRIKNERTAKGLTRKALAELTESLKVSRINNYERGERTPGPNE--IKQLA 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L + + L D + IPLL + + + + Sbjct: 59 EALEVSPAFLMCLSDDRQGKLKQAPGLGSLIPLLNYNQACKPELYIEEIKNESYSEKVTL 118 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTG 178 +P + I + +D SM P R D +I + + GD ++ Sbjct: 119 IPISSLLYER---IGKNAFALEIKDDSMSPELRVNDTVIADPDTPPSPGDFVIAKLEHNN 175 Query: 179 DIVAKVLISRR----GRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 +++ + +L++LN + V I ++ Sbjct: 176 EVIIRKYKQLSAAKIANEFELIALNQDWASIHVGAETHGVIIGTLV 221 >gi|222153050|ref|YP_002562227.1| phage repressor-like protein [Streptococcus uberis 0140J] gi|222113863|emb|CAR42005.1| putative phage repressor-like protein [Streptococcus uberis 0140J] Length = 230 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 21/230 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FS K+ + + ++H ++ L +K G++ + + ++ + + +I Sbjct: 1 MFSGKQ----LKTIRQKHQMSQESLGQKLGVNKMTISNWEKGKNVPNQKH--LNQLLEIF 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 ++ + + T ++++ + Sbjct: 55 HLDADSFNPYQAIILPYKQLTSLNQEKVVTYSKELLEEQNKIVQLSQSQKKLYVYRVYES 114 Query: 123 IRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + + Y D SM P Y G+++++ G Sbjct: 115 LSAGTGFSYFGDGNYDEVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQEGFDYDG-A 173 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G K + + L+SLN Y + I +I+ Sbjct: 174 IYAVEWDGQTYIKKVYREEDG-LRLVSLNKKYSDKFAPFDENPRIIGKII 222 >gi|296110528|ref|YP_003620909.1| putative phage repressor [Leuconostoc kimchii IMSNU 11154] gi|295832059|gb|ADG39940.1| putative phage repressor [Leuconostoc kimchii IMSNU 11154] Length = 230 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 27/230 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-- 68 + + N+ P+ LA+ G+ +S ++ + I K L Sbjct: 6 SRLKIAMDHKNIKPADLAKMTGIGKSSISQWLAGKYSAKQDNIFV--IAKTLNINPSWLI 63 Query: 69 ------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------------ 110 + + + KE++ + + P Sbjct: 64 GADVPMNDESILDKIYNVANKISKERQEKVYKYTKQQYNEQNKIVQMPIKREVVISGAVS 123 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G E + G I D SM P + I+ ++ +V G Sbjct: 124 AGTGEYLGDGHEETVAYEGE--IPPHDFAVIVNGDSMEPTFADKQIIFVDKTKEVFNGQF 181 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 ++ K +S + L+SLN Y ++ + ++ ++ Sbjct: 182 IIADYDQQ-AYVKKFMSDENGA-RLVSLNPKYNDMPLDENHELSVFGVVV 229 >gi|253755127|ref|YP_003028267.1| DNA-binding protein [Streptococcus suis BM407] gi|251817591|emb|CAZ55338.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 230 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 63/224 (28%), Gaps = 20/224 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + S LA K ++ +S+ + + + + + +L Sbjct: 4 GKRLKERRITLGYSQSELADKLHINRSSYFNWENEKT--KPNQSNLKQLAILLDVPETYF 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------SGVFPTGNKWN- 116 + + + + + ++++ G + G Sbjct: 62 ESEYKIVNTYLQLSLQNQEKVEKYAEELLQEQGIHNKIIPLFAVEVLSEIQLFAGPGEGL 121 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 Y D SM P+Y+ G++ ++ S G + Sbjct: 122 YDEFETETVYSEDEYT--GFDIATWISGNSMEPVYKDGEVALIRSTGFDYDG-AVYALNW 178 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G + K L ++S+N + +I + +++ Sbjct: 179 NGSLYIKKLYREEDG-FRMVSINPDVAERFIPFEDEIRIVGKVV 221 >gi|330974358|gb|EGH74424.1| prophage PSPPH03, Cro/CI family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 290 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 64/261 (24%), Gaps = 56/261 (21%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----------------------- 55 L+ +A +AG+ P + N + R+ + Sbjct: 28 ELKLSQKKIADEAGMTPAAVNLYFKGINPLNTRFAAVLSRMLQEPVERFSPRLAKEIASL 87 Query: 56 -----------------ESIFKILAATNETICQLLDLPFSDGRTTEK----KEKEIPLLY 94 + I K Q + + + K + Sbjct: 88 TSAAKPAASQSSVDIVQQMIAKHGKNLPADARQKIADAVEEVAASVAGANIKGADYSRPG 147 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIR----------SPHNGIYAIQTQDTRHKTQD 144 G PE+ + Sbjct: 148 LVGDEVWIAHYDVRAAMGGGQIPSEYPEMLQDIRVSPKHLREMGVTFKEHFHLKMITGWG 207 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P + D L+++ ++ GD + + + K L + ++S N + Sbjct: 208 QSMAPTIKDRDPLLVDVTVREFTGDGIYLFSYDEMLYVKRLQKKGKDRFKMISDNKHHDP 267 Query: 205 DTVEMSDIEWIARI--LWASQ 223 + + + D +AR+ +W Q Sbjct: 268 EDIRVDDTHILARVIYVWNGQ 288 >gi|296139522|ref|YP_003646765.1| transcriptional repressor, LexA family [Tsukamurella paurometabola DSM 20162] gi|296027656|gb|ADG78426.1| transcriptional repressor, LexA family [Tsukamurella paurometabola DSM 20162] Length = 236 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 25/223 (11%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTES 57 + K++ E I R PS + + GL TS ++ + G R P+ Sbjct: 27 TRRQKQVLEVIRRSVRDRGYPPSIREIGDEVGLTSTSSVAHQLRTLERLGFLHRDPNRPR 86 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + + E+ +P F P + Sbjct: 87 A--------VNVQGTEERTAQVIQRVMEDEERMPEPAFVPVLGRIAAGGPILAEEAVEEI 138 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P + K SM+ GD +++ GD + Sbjct: 139 FPLPRELVG-------EGSLFLLKVVGESMVDAAICDGDWVVVRQQSVAENGDIVAAMLD 191 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K R G+ + LM N + +D + +++ Sbjct: 192 -GEATVKTF-RRTGKDVWLMPHNPAFDPIH--GNDAVVLGKVV 230 >gi|91783348|ref|YP_558554.1| LexA repressor [Burkholderia xenovorans LB400] gi|296157707|ref|ZP_06840541.1| transcriptional repressor, LexA family [Burkholderia sp. Ch1-1] gi|123168539|sp|Q13ZI7|LEXA_BURXL RecName: Full=LexA repressor gi|91687302|gb|ABE30502.1| SOS-response transcriptional repressor, LexA [Burkholderia xenovorans LB400] gi|295891953|gb|EFG71737.1| transcriptional repressor, LexA family [Burkholderia sp. Ch1-1] Length = 216 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 59/213 (27%), Gaps = 23/213 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G + S E Sbjct: 1 MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSAN----------------SAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA + L G G+ Sbjct: 45 EHLRALARKGVIELAAGASRGIRLLAGPEDSPHQFTLPHASIMQLSLPLIGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 105 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKKSEAKDGQIVIAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 D+ K L R ++L++ N Y VE Sbjct: 164 LGDDVTVKRLKRRPNG-LELIAENPDYENIFVE 195 >gi|289550873|ref|YP_003471777.1| SOS-response repressor and protease LexA [Staphylococcus lugdunensis HKU09-01] gi|315658374|ref|ZP_07911246.1| repressor LexA [Staphylococcus lugdunensis M23590] gi|289180405|gb|ADC87650.1| SOS-response repressor and protease LexA [Staphylococcus lugdunensis HKU09-01] gi|315496703|gb|EFU85026.1| repressor LexA [Staphylococcus lugdunensis M23590] Length = 207 Score = 87.9 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 61/227 (26%), Gaps = 34/227 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53 M + +I++ I + + PS + GL ++ + E R P Sbjct: 1 MRELTKRQSEIYDYIKHIVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +I++ N+ + P + N Sbjct: 61 TKPRAIEIVSEHNDAAIDMEGTIH------------------VPVIGKVTAGIPITAVEN 102 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 +PE + + + SM GD +I+ S GD ++ Sbjct: 103 VEEYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIV 157 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + +++ Sbjct: 158 AMTDEDEATVKRFYKEK-HHYRLQPENSSMEPIYLDS--VSVLGKVI 201 >gi|210621325|ref|ZP_03292587.1| hypothetical protein CLOHIR_00530 [Clostridium hiranonis DSM 13275] gi|210154808|gb|EEA85814.1| hypothetical protein CLOHIR_00530 [Clostridium hiranonis DSM 13275] Length = 212 Score = 87.9 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 52/220 (23%), Gaps = 25/220 (11%) Query: 4 FSHKKI--WEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + K+I E I + P+ + L TS S + Sbjct: 5 LTDKQIAILEFIKSEISKKGYPPAVREICDAVSLRSTSTVHSH------------LNKLE 52 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K+ + R + + P +F N + Sbjct: 53 KLGYIRKDPTKPRAIEVLDKARDEDDVMGLHQEMINLPLIGQITAGEPIFAEQNIEEYIP 112 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + + SM+ GD ++++ G + Sbjct: 113 LPASLVSG-------KDNFVLRVKGESMINAGILDGDYVVVDKKNTAANGTMVAALVENE 165 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K I L N E S ++ I + Sbjct: 166 KATVKTFYK-EDGKIRLQPENEFMEPFIFEDSQVQIIGVV 204 >gi|317493024|ref|ZP_07951448.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919146|gb|EFV40481.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 255 Score = 87.9 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 58/220 (26%), Gaps = 9/220 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I ++ + S A + + S R E + + ++ Sbjct: 32 RIKAALKKQGIEISEPAIWKWRNGAAIPDSTNILALSRWLNVRAEWLEYGVEPMSQDAAI 91 Query: 72 LLDLPFSDGRTTEKKEK--EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------VPEI 123 P + + +F S G+ + Sbjct: 92 AQKEPDMPPQNQWSGVDVWDSNTPLGDDEVEIPYFKSIELAAGHGCVNNEDHNGFKLRFS 151 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 ++ A SM P+ +G + ++ A + + + K Sbjct: 152 KATLRRAGADPACTIAFPVHGHSMEPVIPEGTTVTVDLANKRIIDGAIYAIDHGDLLRVK 211 Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 L + + + S N +P + + +E I R++ S Sbjct: 212 QLFRLPNKKLSIRSYNKIDFPDEEADQDSVEIIGRVIHYS 251 >gi|167463701|ref|ZP_02328790.1| hypothetical phagelike protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384406|ref|ZP_08058092.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150764|gb|EFX44224.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 217 Score = 87.9 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 22/219 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + E+ LT LA GL T+ K + +P + I ++ + Sbjct: 5 GEIIKLLREQRGLTQQQLANILGLKTYTTITKWESGDN-----FPKGKDIKRLSEFFKVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +L L ++ K ++P S S G T + T+ +P+ Sbjct: 60 SDYILGLE----KSNSCMLKTSDYPFYPISISAGQPIEVNTITEDNVETITLPDDM---M 112 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKVLI 186 G +A + SM + ++++ ++N GD ++ + K Sbjct: 113 GKWAGSEDIYIMRVNGESMNKVIPHNSLIVVKNIELSELNNGDIVIY-SNGNEYSVKRFY 171 Query: 187 SRR-GRSIDLMSLN--CCYPVDTVE---MSDIEWIARIL 219 + + + + + V +S+I+ +++ Sbjct: 172 NDKVNSRVIFRPDSTDPSFTDYLVSYGNISEIKIHGKVV 210 >gi|330939437|gb|EGH42793.1| putative transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 271 Score = 87.9 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 64/250 (25%), Gaps = 44/250 (17%) Query: 12 AIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E +LT +A G + ++ I + ++ K + Sbjct: 24 YLAKKREDKSLTQERIADLCGWAGQSVVSQYLNGKIP-----LNFNALSKFSNVLGFSYE 78 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLY--------FPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 Q+ + L + + + T + V +P Sbjct: 79 QVSPRLARFIKYPVVGAPFSMDLQEGDLDGPPSASAHALIPIEEWDDKTPLDPDEVELPF 138 Query: 123 -------------------------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 + SM P+ G + Sbjct: 139 FKEVELSAGKGSEVMLETNGRMLRFGKRTLQKKGIDPNTAGCVPVHGNSMEPVLPDGSTV 198 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDI 212 +++A+ ++ G + KVL G + L S N +P + + I Sbjct: 199 GVDTAVTAIQDGKMYAIDHDGQLRVKVLYRLPGSGLRLRSYNAEEHPDERYDGDYVRDHI 258 Query: 213 EWIARILWAS 222 I ++ W S Sbjct: 259 RVIGKVFWYS 268 >gi|297617268|ref|YP_003702427.1| transcriptional repressor, LexA family [Syntrophothermus lipocalidus DSM 12680] gi|297145105|gb|ADI01862.1| transcriptional repressor, LexA family [Syntrophothermus lipocalidus DSM 12680] Length = 209 Score = 87.9 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 64/220 (29%), Gaps = 36/220 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSK-RFGIEGRNR-WPSTESIFK 60 + I I R PS + + GL ++ + + +G R P+ + Sbjct: 14 EQTILSFIKEEVRRKGYPPSVREIGKAVGLKSSSTVHAYLCQLEEKGYLRKDPAKPRAIE 73 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L + P + P + + N ++ + Sbjct: 74 VLDS--------------------GSALSDPQIVEVPIVGKVAAGTPILAAQNLDGSLPL 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + Q SM +GDILI+ S + G+ ++ + Sbjct: 114 PLDLLGS-------GEHFLLTVQGDSMVEAGILEGDILIVKSQPRAENGEIVV-AMIEDE 165 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R I+L N V +E I +++ Sbjct: 166 ATVKRFFKR-DGYIELRPENSHMQPIIVT-GQVEVIGKVI 203 >gi|330970607|gb|EGH70673.1| putative transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 283 Score = 87.9 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 64/250 (25%), Gaps = 44/250 (17%) Query: 12 AIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E +LT +A G + ++ I + ++ K + Sbjct: 36 YLAKKREDKSLTQERIADLCGWAGQSVVSQYLNGKIP-----LNFNALSKFSNVLGFSYE 90 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLY--------FPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 Q+ + L + + + T + V +P Sbjct: 91 QVSPRLARFIKYPVVGTPFSMDLQEGDLDGPPSASAHALIPIEEWDDKTPLDPDEVELPF 150 Query: 123 -------------------------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 + SM P+ G + Sbjct: 151 FKEVELSAGKGSEVMLETNGRMLRFGKRTLQKKGIDPNTAGCVPVHGNSMEPVLPDGSTV 210 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDI 212 +++A+ ++ G + KVL G + L S N +P + + I Sbjct: 211 GVDTAVTAIQDGKMYAIDHDGQLRVKVLYRLPGSGLRLRSYNAEEHPDERYDGDYVRDHI 270 Query: 213 EWIARILWAS 222 I ++ W S Sbjct: 271 RVIGKVFWYS 280 >gi|261365316|ref|ZP_05978199.1| putative repressor protein [Neisseria mucosa ATCC 25996] gi|288566246|gb|EFC87806.1| putative repressor protein [Neisseria mucosa ATCC 25996] Length = 230 Score = 87.9 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 23/214 (10%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL S Sbjct: 18 QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPNA 72 Query: 84 EKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ--- 134 + G+ + + Y ++ Sbjct: 73 QVPSSTAVAYDTLGNPVDIDEFVFVPRYDIQAAAGHGRLVGDEKPVFTMAFRRYWVENYV 132 Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + + SM + GD +++N A D L + +++ K L G Sbjct: 133 TRDTKNLSVISVKGDSMEGVLNDGDTILINHAETA-PKDGLYVLRLNENLLVKRLQLVPG 191 Query: 191 RSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220 ++++S N YP +++ D+ I R+ W Sbjct: 192 GVVNVISANEAYPTFEIDLNNLTDDVAIIGRVEW 225 >gi|15643840|ref|NP_228888.1| lexA repressor [Thermotoga maritima MSB8] gi|6225616|sp|O33927|LEXA_THEMA RecName: Full=LexA repressor gi|4981627|gb|AAD36159.1|AE001768_8 lexA repressor [Thermotoga maritima MSB8] gi|2645227|gb|AAB87145.1| LexA [Thermotoga maritima MSB8] Length = 197 Score = 87.9 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 59/224 (26%), Gaps = 38/224 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + I+ E++ PS +AR+ + P R Sbjct: 1 MKDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + P + Sbjct: 43 -------LLHLIALEKKGYIERKNGKPRALRISKSIRNKIPLIGEIRAGEKREAIEYLED 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + +PE K + SM GD++++ GD + Sbjct: 96 YIEIPESFLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVAAMV 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K +RG +++L N ++ + +++ Sbjct: 150 D-GEVTLKKFY-QRGDTVELRPANREMSSMFFRAEKVKILGKVV 191 >gi|323517351|gb|ADX91732.1| S24 family peptidase [Acinetobacter baumannii TCDC-AB0715] Length = 218 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 18/223 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H++I + + L LA G + K P TES+ K+ Sbjct: 1 MELHERIVQK----MKEKKLRQVDLALATGKSKVAVLKWINGENV-----PKTESLKKLA 51 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + L+ +++P P P + E Sbjct: 52 ELFGVSDSWLMHGTEEKLDNNVVLSEKMPSDGRPVPVISWVAAGSFSPIETVLKDTEIEE 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTG- 178 P+ K SM P + GD + +N IQ D +++ Sbjct: 112 YLPPNRRC---GKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVACAGDS 168 Query: 179 DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219 + K LI S L LN +P +++ D + +++ Sbjct: 169 EATFKKLIIEGEGSSKFLEPLNPDWPDKIIKLSEDCRLVGKVV 211 >gi|321156793|emb|CBW38777.1| Putative helix turn helix DNA binding protein [Streptococcus pneumoniae] Length = 254 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 14/217 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + E L+ S LA G+ S+ + + + + +IL Sbjct: 34 LKEKRESQGLSQSQLASSLGISRASYFNWESGKT--KPNQNNLSKLSEILNVDPRYFESE 91 Query: 73 LDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + + TE+ ++ F T + Sbjct: 92 YEIVETYLKLTERNQEATLHYATELLNKQNAKVVEIPERFAYKVYEKLSAGTGTAYFDDG 151 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D SM P Y G + ++ G + G K Sbjct: 152 NYDTVYFNHQFDYDFASWVFGNSMEPTYEDGSVALIKQTGFDYDG-AIYAIDWDGQTYIK 210 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + + L+SLN Y + I +I+ Sbjct: 211 KVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 246 >gi|183217354|gb|ACC59273.1| UV resistance protein UmuD [Streptococcus pneumoniae] Length = 227 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 14/217 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + E L+ S LA G+ S+ + + + + +IL Sbjct: 7 LKEKRESQGLSQSQLASSLGISRASYFNWESGKT--KPNQNNLSKLSEILNVDPRYFESE 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + + TE+ ++ F T + Sbjct: 65 YEIVETYLKLTERNQEATLHYATELLNKQNAKVVEIPERFAYKVYEKLSAGTGTAYFDDG 124 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D SM P Y G + ++ G + G K Sbjct: 125 NYDTVYFNHQFDYDFASWVFGNSMEPTYEDGSVALIKQTGFDYDG-AIYAIDWDGQTYIK 183 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + + L+SLN Y + I +I+ Sbjct: 184 KVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 219 >gi|110633546|ref|YP_673754.1| putative phage repressor [Mesorhizobium sp. BNC1] gi|110284530|gb|ABG62589.1| putative phage repressor [Chelativorans sp. BNC1] Length = 230 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 24/217 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKILAATN 66 I E ID LT S A+ AGL ++ +R G+ ST ++ K+ Sbjct: 4 DILERIDERLAEVGLTESRAAKMAGLSDSAIRDMRRAVKSGKEDAGVSTRTLAKLAPVLQ 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + LL + + +P++ + +G+ + P PE Sbjct: 64 TSAEWLLTG-----GPEGIRSRTVPIMGYLGAGAEVEPEYEQVP----------PEGLDQ 108 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVA 182 + +++ + K + SMLP+Y+ G ++I+ S + G+ ++ G Sbjct: 109 VDVPFSVPDEMIAFKVRGDSMLPVYKDGAVIIVYSEQKKPLHSFYGEEAAVRTSDGRRFI 168 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K ++ +++L+S N +E +EWI I Sbjct: 169 KTIMRGPDDTVNLLSHNAS----PIEGVRLEWIGEIF 201 >gi|255066737|ref|ZP_05318592.1| putative repressor protein [Neisseria sicca ATCC 29256] gi|255049065|gb|EET44529.1| putative repressor protein [Neisseria sicca ATCC 29256] Length = 228 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL T Sbjct: 18 QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGEPFPNT 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134 E + G+ + + Y I+ Sbjct: 73 EPPKATAYDTLGNPVDIDEFIFVPRYDIHAAAGHGQLVGDEKPMFTMAFRRYWIENYVTR 132 Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N + D L + +++ K L G Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDTILINRSETT-PRDGLYVLRINENLLVKRLQVIPGGI 191 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 ++++S N YP +++ D+ I R+ W Sbjct: 192 VNVISANEAYPAFEIDLNKMTEDVAIIGRVEW 223 >gi|311739627|ref|ZP_07713462.1| repressor LexA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305443|gb|EFQ81511.1| repressor LexA [Corynebacterium pseudogenitalium ATCC 33035] Length = 234 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 54/217 (24%), Gaps = 12/217 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I I PS + AGL TS + +E + + + Sbjct: 21 QRRILNVISDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEK------GFLRRDPN 74 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + L+ + K K + G G + Sbjct: 75 KPRAVDVRHLNTDDGANKPGRKPAKSEQQVPEDAGAVSYIPVVGRIAAGAPITAEENVDT 134 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P + SM GD +I+ S G+ + + Sbjct: 135 YFPMPDEVVGGGDLYMLQVVGDSMQDAGILDGDWVIIRSQSVAEEGEFVAALLEGSEATV 194 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y D E + +++ Sbjct: 195 KEFHRDSSG-VWLLPHNEAYAPI--NGDDAEIMGKVV 228 >gi|328955562|ref|YP_004372895.1| SOS-response transcriptional repressor, LexA [Coriobacterium glomerans PW2] gi|328455886|gb|AEB07080.1| SOS-response transcriptional repressor, LexA [Coriobacterium glomerans PW2] Length = 211 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 30/227 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIEGR--NRWP 53 M + ++I++ I PS +A GL P++ + + R Sbjct: 1 MRKITKRQQQIYDFIRSYQLEKGYPPSVREMAAAVGLSSPSTVHAHLSALEDHGFIKRDA 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + ++ + + D + + N Sbjct: 61 TKPRALELFNEDGSSAKLAEVIEKPDRGSISLPLV-----------GRVAAGMPILAEQN 109 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +T +P A + + SM+ GD +++ G+ ++ Sbjct: 110 VEDTFTLPTEI-------ATDSSSFILEVHGDSMIDAGILNGDYIVVREQSSAMNGEIIV 162 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K + L N V D + +++ Sbjct: 163 AMIDS-EATVKTFYKEP-GRVRLQPANDAMEPIYVT--DPVILGKVV 205 >gi|284009387|emb|CBA76574.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 248 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 10/218 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----EGRNRWPSTESIFKILAAT 65 + ID +A++ + SG A L+ S S R W K Sbjct: 31 KIIDSLAKQ-GIRVSGPAVWKWLNAESIPDSTNILALSDWLNVRPEWLEYGRGAKNKNID 89 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + Q +D ++ E EIP + G + T+ Sbjct: 90 GTPLNQASYAYCADEVSSADDEVEIPYYKSIELAA-GHGSYANQTETDFCRTLKFSRSIL 148 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + GI + ++ SM P+ G ++ +++ + + + + K+L Sbjct: 149 NNYGI--LPSEAMSFPVHGDSMSPVIPSGAVVTISTGHKKIVDGAIYAIKQADLLRVKIL 206 Query: 186 ISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 + + S N YP + + DIE I R+ S Sbjct: 207 RRLPNSKVIIKSYNSIDYPDEEANLDDIEIIGRVFNWS 244 >gi|197117030|ref|YP_002137457.1| LexA-like helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197086390|gb|ACH37661.1| helix-turn-helix transcriptional regulator, LexA-related protein [Geobacter bemidjiensis Bem] Length = 209 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 60/215 (27%), Gaps = 21/215 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + I + LT A G+ + + GR R PS + + Sbjct: 7 HAETGVRIKKARLALGLTQKEFAASLGIVQGFLSGIE----TGRKR-PSDTLLIALSHTF 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L D + E P + P P G + VP+ Sbjct: 62 GINAQWLSDGSGESFKNQ--PGAEQPNVSRAPLLEMIPDSFPDDP-GAISRYISVPD--- 115 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKV 184 + M P R GD++I + Q GD +++ R G+ + + Sbjct: 116 -------LPEGCYAIVCYGDFMSPTIRDGDVVIFRPESEQKKSGDIIIVHNRWGEPILRR 168 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + I L N Y I ++ Sbjct: 169 Y-RVKDDEIYLAPDNPAYAPFQ-PDDGTRTIGIVV 201 >gi|15485441|emb|CAC67535.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 232 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 60/223 (26%), Gaps = 21/223 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILA------ 63 E + + LT +A + G+ +++ +R E + + E + K+ Sbjct: 5 EKLKARRKELKLTQKDIADQLGISYQAYSAWERGIKEPSKEKVNRLEQLLKVSKGYFTEI 64 Query: 64 ---ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNT 117 T+ + ++++ + + G ++ Sbjct: 65 EIVRLYNTLSNKGKNQVVEYARDLVQKEKTRQVMSVSEKLYEYHVYEKMSAGIGASVYDN 124 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + D SM P Y G + ++ G + Sbjct: 125 RNYDTVYFNEELA-----HDFASWVSGDSMEPKYHNGSVALIRETGFDYDG-AVYAVVCN 178 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y + + + I+ Sbjct: 179 NQTYLKRVYREEEG-LRLVSINPKYKDIFITYDEDPRVVGIIV 220 >gi|261209042|ref|ZP_05923446.1| predicted protein [Enterococcus faecium TC 6] gi|289566563|ref|ZP_06446985.1| predicted protein [Enterococcus faecium D344SRF] gi|294615927|ref|ZP_06695763.1| repressor [Enterococcus faecium E1636] gi|260076954|gb|EEW64677.1| predicted protein [Enterococcus faecium TC 6] gi|289161662|gb|EFD09540.1| predicted protein [Enterococcus faecium D344SRF] gi|291591214|gb|EFF22887.1| repressor [Enterococcus faecium E1636] Length = 250 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 66/249 (26%), Gaps = 47/249 (18%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + +T LA+K G T+ ++ + R P + + + + Sbjct: 8 QRLKELRAEKGITLEELAKKIGTTKTTLSRYENGE-----RSPKLQLVGLLANYFQVEMS 62 Query: 71 QLLDLPFSDGR-------TTEKKEKEIPLLYFP----------------------PSGSG 101 L T ++ + F Sbjct: 63 WLSGQSDQRNSLNILPIYTQLSSPRQQKVYNFAKNELEEQNRSNVIQGNFGKAVDEDEKQ 122 Query: 102 GFFDSGVFPTGNKWNTV--GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 G+ G+ P D SM P + G+I+ + Sbjct: 123 EVSYVGLLSAGHGCPNYDKERPFGTVTMRESQIPSHYDLAFMVNGNSMYPTFENGEIVFI 182 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--------NCCYPVDTVEM-S 210 V G ++ G+ K + R + L+SL N YP + Sbjct: 183 KQTPNVMNGQIGAVEIN-GEAFLKKMY-VENRRLRLVSLNCECDENGNRLYPDFYADEYD 240 Query: 211 DIEWIARIL 219 D+ I R++ Sbjct: 241 DLYVIGRVI 249 >gi|326202168|ref|ZP_08192038.1| transcriptional repressor, LexA family [Clostridium papyrosolvens DSM 2782] gi|325987963|gb|EGD48789.1| transcriptional repressor, LexA family [Clostridium papyrosolvens DSM 2782] Length = 215 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 61/221 (27%), Gaps = 25/221 (11%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGRN--RWPSTESIF 59 ++I + + + + PS + G T + + + I+ + P+ Sbjct: 8 KQQEILDYVYKCVHENGYPPSVREICSAVGFKSTSTVHSYLQKLIDSGLLQKDPTKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 KIL + K+ + Y+ G G V Sbjct: 68 KILNR----------------ASQVKESRTSKDGYYTSREMVDVPVVGRVTAGQPILAVE 111 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 P + + + Q SM D +++ N GD ++ Sbjct: 112 NITDTFPLPVDFVQNSDAFMLRIQGESMVEAGILDKDFVLVRQQSSANNGDIVVALI-GD 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N V D+ + +++ Sbjct: 171 EATCKTFYREKD-YIRLQPQNSSMEPILV-KDDLSILGKVI 209 >gi|168186349|ref|ZP_02620984.1| LexA repressor [Clostridium botulinum C str. Eklund] gi|169295806|gb|EDS77939.1| LexA repressor [Clostridium botulinum C str. Eklund] Length = 204 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 61/222 (27%), Gaps = 42/222 (18%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR-WPSTE 56 +I+E I PS + + GL TS +K +R G+ R+ P T Sbjct: 8 KQIEIYEFIKEQIIEKGYPPSVREICKGVGLSSTSSVHGHLSKLERKGLIRRDSTKPRTI 67 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I K + + P + + N + Sbjct: 68 EILK-------------------------ESIVPKEMVNIPILGKVTAGAPILAVENIED 102 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 T + P N + K SM GD+ I+ G+ ++ Sbjct: 103 TFPISLNFIPSN------KELFMLKVSGESMIEAGILDGDLAIIEKTNTAKNGEIVVALM 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++ K + I L N +E + + + Sbjct: 157 D-NEVTLKRFFK-EDKHIRLQPENKSMDPIILEDDSVSIVGK 196 >gi|226227132|ref|YP_002761238.1| LexA repressor [Gemmatimonas aurantiaca T-27] gi|226090323|dbj|BAH38768.1| LexA repressor [Gemmatimonas aurantiaca T-27] Length = 202 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 45/172 (26%), Gaps = 5/172 (2%) Query: 53 PSTESIFKILAA----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 PS E I T L+ R+ + L S G Sbjct: 25 PSFEEIASQFNYNSLATVHEHLTNLERKGYIKRSYNESRAIEILPSEIYQRSVELPLLGS 84 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G V E + +G + + SM R GD +++N + Sbjct: 85 VAAGAPIEAVHSGETMAVPDGFLRRNGSHYVLRVRGDSMIEEHIRDGDFVVINDKQAADN 144 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ K R I L N V D+ ++ Sbjct: 145 GEMVIALLDGSGATVKRYYRERDGRIRLQPANETMQPLFVHEDDVRIQGIVV 196 >gi|158320581|ref|YP_001513088.1| SOS-response transcriptional repressor, LexA [Alkaliphilus oremlandii OhILAs] gi|166990796|sp|A8MFC9|LEXA_ALKOO RecName: Full=LexA repressor gi|158140780|gb|ABW19092.1| SOS-response transcriptional repressor, LexA [Alkaliphilus oremlandii OhILAs] Length = 206 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 56/221 (25%), Gaps = 34/221 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 +I + + PS + GL TS +E + R P+ Sbjct: 8 KQLEILNYMKMEINKRGYPPSVREICEAVGLRSTSTVHGHLAKLEDKGYIRRDPTKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL+ + P + T N +T Sbjct: 68 EILSNDPFSDYSHNKEMVQ-----------------VPIVGKVTAGQPILATENIEDTFP 110 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + SM D +++ + GD ++ Sbjct: 111 LPLN-------FIDHGNTFILNVKGESMIEAGILDNDYVVIRQQSTASNGDIVVALID-D 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ D+ + +++ Sbjct: 163 EATVKRFFKESD-HIRLQPENSLMDPILLK--DVVILGKVI 200 >gi|11138336|gb|AAG31331.1|AF182207_5 ORF 221 [Lactobacillus phage mv4] Length = 221 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 23/214 (10%), Positives = 64/214 (29%), Gaps = 18/214 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ + + + + R+ G+ ++ + PS +++ K+ + Sbjct: 17 IAGNLNALLSKTAYKKADVVRQTGISESTVYDYFNGKV-----LPSPKNVEKLADFFRVS 71 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL-LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + ++ + + + G + + T P+ Sbjct: 72 NEEIDPRFATMPENMVPVDQSHLVKIPLIGHIACGEPITADQNIE-GYITEYFPDHVD-- 128 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-IVAKVLI 186 K + SM P GDI + +V G+ + K + Sbjct: 129 ------PDSIFALKCEGDSMEPYILDGDIAYIRQQPEVEDGEIAAVLVDGDTRASLKRVK 182 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + L+ N Y ++ + I +++ Sbjct: 183 KVGNQVF-LLPDNPHYSPIVLDQDHPGKIIGKMI 215 >gi|170720845|ref|YP_001748533.1| LexA repressor [Pseudomonas putida W619] gi|169758848|gb|ACA72164.1| transcriptional repressor, LexA family [Pseudomonas putida W619] Length = 202 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 60/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA + + G G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPG-----------FEAKAEENGLPIIGRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AEQHIEQSCNINPSFFHPRADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ + Sbjct: 154 -GDEVTVKRFKR-EGSKVWLIAENPDFAPIEVDLKE 187 >gi|237746397|ref|ZP_04576877.1| repressor protein CI [Oxalobacter formigenes HOxBLS] gi|229377748|gb|EEO27839.1| repressor protein CI [Oxalobacter formigenes HOxBLS] Length = 245 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 47/233 (20%) Query: 5 SHKKIWEAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + + E +D + +++ T LA+K G+ T+ + +R + + E++ I Sbjct: 8 TKEIVAEQLDLLMKQNPHLG-TQMKLAKKTGIGQTTIGRIRRGEVNA-----TAENLRAI 61 Query: 62 LAAT----------------------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 A ++ K ++PL+ + +G Sbjct: 62 ADAFSVTVGFLYGEETIHGIHMDADGPAEAPLPPEVKPGYSGPPPDKVGQLPLISWVRAG 121 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKG 154 + P G+ + P S H + SM Y G Sbjct: 122 NWSETIDNFAP-GDAEEWIPCPFKHSRH---------AFILQVVGKSMYNPGGERSYNDG 171 Query: 155 DILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 D + ++ + G ++ K L+ LM+LN +P Sbjct: 172 DYIAVDPCREAQNGSLVVVRLDDDNTATFKQLLIEPNGERMLMALNPSWPNRI 224 >gi|227499696|ref|ZP_03929799.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227218293|gb|EEI83552.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 233 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 24/220 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + E + + + T +A K + +++ ++ E P + Sbjct: 29 MTNLT-----ENLKYYRKLNGYTQETIAPKLNIKTSAYGSYEQGRNE-----PPYSKLKM 78 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + +I +L P K I + P+G P + Sbjct: 79 LASIYGISISELTGEPEKKEPIQNKDYITINIYGSIPAG---------IPIEAIEDISDT 129 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 ++ Y + SM P Y GD +I+ G + + Sbjct: 130 EDLSLKE---YDKNKTYLGLRVDGDSMYPKYLDGDTVIIEKTPDCESGTDAAVYVNGYEA 186 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARI 218 K +I +I L +N Y T D + + + Sbjct: 187 TLKTVIKNENGTITLKPINANYAPRTYGPGDDPVRILGVV 226 >gi|157363210|ref|YP_001469977.1| SOS-response transcriptional repressor, LexA [Thermotoga lettingae TMO] gi|172045979|sp|A8F429|LEXA_THELT RecName: Full=LexA repressor gi|157313814|gb|ABV32913.1| SOS-response transcriptional repressor, LexA [Thermotoga lettingae TMO] Length = 200 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 4/169 (2%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 PS I + T L+ + ++ + S + G G Sbjct: 27 PSIRDIARAFRITPRGAIVHLNALEKK-GYLTRGKRARSIKVLNRSEAIRLPVVGTIAAG 85 Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 N + P I + + SM D +++ N GD Sbjct: 86 NAIEAIENPTEIIEVPKAMIKIGFDHFLLRVRGESMIEEHILDKDYVVIRKQNTANNGDI 145 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + K + I L N ++ +++ + +++ Sbjct: 146 VAVLTNSNEATLKKIY-IEPEKIILKPANSKMQPIELKPENVKILGKMV 193 >gi|254508996|ref|ZP_05121102.1| prophage MuMc02, peptidase, family S24 [Vibrio parahaemolyticus 16] gi|219548100|gb|EED25119.1| prophage MuMc02, peptidase, family S24 [Vibrio parahaemolyticus 16] Length = 201 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 52/203 (25%), Gaps = 30/203 (14%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 LA+ G P + + K + K + E Sbjct: 22 DLAKALGKSPKTISNWKHRNHIPE------DIFIKARELSQNGSLAPRGYLELKFYDVEV 75 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 L+ S F + + Sbjct: 76 SAGHGALVEKEEESSAMVFSEKFIRQELGF-----------------NPNNIFLMPVRGD 118 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 SM P + I+++N + + + G ++ K + I ++S N Y Sbjct: 119 SMSPTLKNQSIVMVNRVDGFSNDGIYVFRFD-GRLMVKRIQFLPQG-IKVVSDNSAYEPW 176 Query: 206 TVEMSDI-----EWIARILWASQ 223 + SDI E I ++W+ Q Sbjct: 177 ELSKSDIQSADFEIIGEVVWSGQ 199 >gi|189423406|ref|YP_001950583.1| phage repressor [Geobacter lovleyi SZ] gi|189419665|gb|ACD94063.1| putative phage repressor [Geobacter lovleyi SZ] Length = 230 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 11/219 (5%) Query: 9 IWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I+++ + +L + +A+ DP K+ G ++ + Sbjct: 13 IETIIEKLKKALDLKNDTDVAKALESDPRLLGTWKKRGTVPYDKIIKL--CIRHNINLQW 70 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 LP E + + + + + + + Sbjct: 71 IFSDDSSLPTVCRDNGLVSEADGYVQVPRYEVKASAGGGAIIHSEQIVDHLYFKTEWVKN 130 Query: 128 NGIYAIQTQDTRH-KTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVL 185 + I Q SM P GD+++++ +V G +++ ++ K L Sbjct: 131 --VLGIPRDFLALISVQGDSMEPTLSNGDLILIDVRTSKVEDGAIYVVQYD-DVLLVKRL 187 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 + S+ + S N Y + + + ++ + R++WA Sbjct: 188 QKKYDGSVVIRSDNTLYEPEILHGDEALNLKIVGRVVWA 226 >gi|153940744|ref|YP_001391049.1| LexA repressor [Clostridium botulinum F str. Langeland] gi|168180367|ref|ZP_02615031.1| LexA repressor [Clostridium botulinum NCTC 2916] gi|168184852|ref|ZP_02619516.1| LexA repressor [Clostridium botulinum Bf] gi|170757134|ref|YP_001781343.1| LexA repressor [Clostridium botulinum B1 str. Okra] gi|170759494|ref|YP_001787115.1| LexA repressor [Clostridium botulinum A3 str. Loch Maree] gi|226949036|ref|YP_002804127.1| LexA repressor [Clostridium botulinum A2 str. Kyoto] gi|237795204|ref|YP_002862756.1| LexA repressor [Clostridium botulinum Ba4 str. 657] gi|171769217|sp|A7GE39|LEXA_CLOBL RecName: Full=LexA repressor gi|229621202|sp|B1KS97|LEXA_CLOBM RecName: Full=LexA repressor gi|229621209|sp|B1IM63|LEXA_CLOBK RecName: Full=LexA repressor gi|254809091|sp|C1FNT4|LEXA_CLOBJ RecName: Full=LexA repressor gi|259494470|sp|C3KX30|LEXA_CLOB6 RecName: Full=LexA repressor gi|152936640|gb|ABS42138.1| LexA repressor [Clostridium botulinum F str. Langeland] gi|169122346|gb|ACA46182.1| LexA repressor [Clostridium botulinum B1 str. Okra] gi|169406483|gb|ACA54894.1| LexA repressor [Clostridium botulinum A3 str. Loch Maree] gi|182668656|gb|EDT80634.1| LexA repressor [Clostridium botulinum NCTC 2916] gi|182672063|gb|EDT84024.1| LexA repressor [Clostridium botulinum Bf] gi|226841228|gb|ACO83894.1| LexA repressor [Clostridium botulinum A2 str. Kyoto] gi|229261036|gb|ACQ52069.1| LexA repressor [Clostridium botulinum Ba4 str. 657] gi|295319100|gb|ADF99477.1| LexA repressor [Clostridium botulinum F str. 230613] Length = 201 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 56/220 (25%), Gaps = 37/220 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFK 60 +++ I + PS + + GL TS KR EG + S+++ Sbjct: 8 KQNEVYNFIKLQIKEKGYPPSVREICKAVGLSSTSSVHFHLKRLEKEGLIKRDSSKTRA- 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + P + + N + + Sbjct: 67 ---------------------IEIVDPTSKKEVINVPIVGTITAGNPILAIENIEDVFPL 105 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + K SM GD+ I+ N GD ++ + Sbjct: 106 PIDYVKNT------KDLFMLKVSGESMIEAGILDGDLAIIEKTDSANNGDIVVALID-NE 158 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N + + + + R++ Sbjct: 159 ATLKRFFKES-SYIRLQPENKSMKPIIL--ENCKVLGRLV 195 >gi|167767395|ref|ZP_02439448.1| hypothetical protein CLOSS21_01914 [Clostridium sp. SS2/1] gi|317496726|ref|ZP_07955056.1| LexA repressor [Lachnospiraceae bacterium 5_1_63FAA] gi|167711370|gb|EDS21949.1| hypothetical protein CLOSS21_01914 [Clostridium sp. SS2/1] gi|291559289|emb|CBL38089.1| SOS-response transcriptional repressor, LexA [butyrate-producing bacterium SSC/2] gi|316895738|gb|EFV17890.1| LexA repressor [Lachnospiraceae bacterium 5_1_63FAA] Length = 205 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 51/218 (23%), Gaps = 31/218 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I E I R P+ + L TS S S + L Sbjct: 9 KQQQILEFIKRRILDKGYPPAVREICEAVNLRSTS----------------SVHSHLETL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + ++ P + N + Sbjct: 53 ERKGYIHRDPTKPRAIEITDDDFNLARREIINIPVV-GTVTAGEPILAVENIEEYFPMLP 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD++I+ + GD ++ Sbjct: 112 NHISN-------KNTFMLHVRGESMINAGIFDGDMVIVEQQPTADNGDIVV-AMIEDSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V S++ I +++ Sbjct: 164 VKRFYK-EDGYYRLQPENDTMDPIIV--SEVSIIGKVV 198 >gi|148826910|ref|YP_001291663.1| transcriptional regulator [Haemophilus influenzae PittGG] gi|148718152|gb|ABQ99279.1| predicted transcriptional regulator [Haemophilus influenzae PittGG] Length = 213 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 63/211 (29%), Gaps = 16/211 (7%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 L + G+ + R E+I K T + P + T+ Sbjct: 2 DLQKAVGVTYEMARRYTLGTAT--PRDNKIEAIAKYFGVTPAHLKYGTVDPLENQVTSNV 59 Query: 86 KEKEIPLLYF------PPSGSGGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYA 132 K+ L+ + F+ GN +N + +S Sbjct: 60 KDVGSFDLWDRNTPLNSDEYAVPFYQDIRLAAGNGFADDIADYNNFKLRFSKSTLRKQGV 119 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 SM P+ G + ++ + ++ G + K+L + Sbjct: 120 QYENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQ 179 Query: 193 IDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222 + + S N +P + +M DI I ++ W S Sbjct: 180 VKIRSYNSEEHPDEIADMQDISVIGKVFWYS 210 >gi|301170203|emb|CBW29807.1| unnamed protein product [Haemophilus influenzae 10810] gi|301170317|emb|CBW29923.1| unnamed protein product [Haemophilus influenzae 10810] Length = 221 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 32/229 (13%) Query: 3 SFSHKKIW----EAIDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + +KI +D +R NL G +A + P + +K P+ Sbjct: 1 MITEEKIKQNFAARLDIACKRKNLPEKGRGKIIADMLKITPKAVSKWFNAET-----LPT 55 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-N 113 +I+ + T L + +K+ PLL + G + G + Sbjct: 56 QANIYVLADFLEVTKEWLTYGDKNASIEKIEKQIYYPLLSPIQA---GLWTDIRSLEGFD 112 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + I S + + SMLP + +GD+++++ I G + Sbjct: 113 GYEMIPSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAA 163 Query: 174 KPRTGDIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216 + K + +L+ LN +P + +I I Sbjct: 164 INGDNEATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 212 >gi|297626485|ref|YP_003688248.1| LexA repressor, peptidase S24, SOS regulatory protein dinR [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922250|emb|CBL56822.1| LexA repressor, Peptidase S24, SOS regulatory protein dinR [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 280 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 59/220 (26%), Gaps = 21/220 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPSTESIFK 60 ++I E + E PS + + GL P+S + + + +G R P + Sbjct: 70 QRRILEFVQASVEAIGYPPSIREIGKAVGLTSPSSVSHQLEVLEDKGFVRRDPKRPRALE 129 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + I + + + + + Sbjct: 130 VFMPPARRADADPAETMDITGFGDAFPEAINVPVI----GRIAAGVPILASEQVEQVMPM 185 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + SM GD +++ + GD + + Sbjct: 186 PRELVG-------DGTVFMLEVRGDSMIEAAICDGDYVVIRQQSTADNGDFVAALLD-DE 237 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L R + LM N Y + +++ Sbjct: 238 ATVKELQRR-DGHVWLMPHNQAYEPI--NGDQATLVGKVV 274 >gi|86609770|ref|YP_478532.1| S24 family peptidase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558312|gb|ABD03269.1| peptidase, S24 (LexA) family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 219 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 14/197 (7%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 R+AG+ T+ + + PS + KI + L+ S + Sbjct: 24 AFGRRAGISDTALRSYLKGSV------PSIDKAVKIAQVGQVNLNWLITGEGSPQLHPDA 77 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 K + + + + + S G + + + + + + + + Q Sbjct: 78 KAEYVYVPFVDVAASAGAG--ALVREESIESVIAFERNWLRTHLKG-NPAELSLIRVQGD 134 Query: 146 SMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P GD + + + G + + + GD++ K L G + ++S N +P Sbjct: 135 SMSPTLEDGDWIFVERQEGGDLGCEGIYVFQMDGDLLVKRLQRLPGSQVKVISDNPRFPP 194 Query: 205 DTVEMSD----IEWIAR 217 +++D + I R Sbjct: 195 FVADLADPINGLTLIGR 211 >gi|329847829|ref|ZP_08262857.1| HTH-type transcriptional regulator prtR [Asticcacaulis biprosthecum C19] gi|328842892|gb|EGF92461.1| HTH-type transcriptional regulator prtR [Asticcacaulis biprosthecum C19] Length = 197 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 29/211 (13%) Query: 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80 L+ + LAR G + R+P ++ I A ++ L+ Sbjct: 2 GLSQADLARITGEPRAKISAYANGE-----RFPQADTAIAIADALGVSVPYLILGRGDGP 56 Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIYAIQTQD 137 R+ + + F G+ W + I + + A+ Sbjct: 57 RSLSR-------------MNDIPLSELRFSAGHGWVDVGEIEGRVIGFSDDELRALGRTS 103 Query: 138 T----RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + SM P G ++++ + + + + K L I Sbjct: 104 IHGLKAFRAKGDSMTPTIPDGAPVLVD-ELDTQLNEGIYAFRVGEHLRIKRLRPVGVGGI 162 Query: 194 DLMSLNCCYPVDTVEMSDIE---WIARILWA 221 + S N YP + + +D+E + R++WA Sbjct: 163 EARSDNDHYPPEVFQGADLEHFKILGRVIWA 193 >gi|319744460|gb|EFV96817.1| phage transcriptional repressor [Streptococcus agalactiae ATCC 13813] Length = 230 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 24/226 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + S LA ++ S+NK + + S ++ +IL Sbjct: 4 GSNLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLS--ALARILDVPTTYF 61 Query: 70 CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115 + + + + + +K+ P + G Sbjct: 62 ESEYKIVNTYLQLSTENQGKVDEYADELLQKQQSQEKVIPLFAVEVLSDVSLSAGLGESL 121 Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + + D + SM P+Y G++ ++ ++ G + Sbjct: 122 FDEYETETVYAEEEQY----GYDIAAWIKGDSMEPIYLDGEVALIRASGFDYDG-AVYAL 176 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + K L ++SLN YP + D + ++ Sbjct: 177 SWNDSVYIKKLYREENG-FKMVSLNDNYPDKWIPYEDNPRIVGLVV 221 >gi|227878838|ref|ZP_03996745.1| LexA repressor [Lactobacillus crispatus JV-V01] gi|256843360|ref|ZP_05548848.1| LexA repressor [Lactobacillus crispatus 125-2-CHN] gi|256849821|ref|ZP_05555252.1| transcriptional repressor protein [Lactobacillus crispatus MV-1A-US] gi|262046933|ref|ZP_06019893.1| LexA repressor [Lactobacillus crispatus MV-3A-US] gi|293381194|ref|ZP_06627202.1| repressor LexA [Lactobacillus crispatus 214-1] gi|295693156|ref|YP_003601766.1| lexa repressor [Lactobacillus crispatus ST1] gi|227861586|gb|EEJ69198.1| LexA repressor [Lactobacillus crispatus JV-V01] gi|256614780|gb|EEU19981.1| LexA repressor [Lactobacillus crispatus 125-2-CHN] gi|256713310|gb|EEU28300.1| transcriptional repressor protein [Lactobacillus crispatus MV-1A-US] gi|260572915|gb|EEX29475.1| LexA repressor [Lactobacillus crispatus MV-3A-US] gi|290922234|gb|EFD99228.1| repressor LexA [Lactobacillus crispatus 214-1] gi|295031262|emb|CBL50741.1| LexA repressor [Lactobacillus crispatus ST1] Length = 208 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 65/218 (29%), Gaps = 29/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I + I E+ ++ P+ + GL TS +E + + + L Sbjct: 9 KQLEILQYIYDTVEKRSIPPTVREICSAVGLSSTSTVHGHLARLERKGWLVKDATKPRAL 68 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T E +L K KEIP++ +G + + +P Sbjct: 69 EITREGKKELGI-----------KPKEIPVIGVVTAGQPI------LAVEDIDDYFPLPP 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + K SM+ GD +I+ N G+ ++ + Sbjct: 112 DL------KSDAGELFMLKVHGESMINAGILNGDSVIVRKQSSANNGEIVVAMTEENEAT 165 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N + + + +++ Sbjct: 166 VKRFYKEKD-HYRLQPENDTMAPIILPK--VTILGKVV 200 >gi|255600323|ref|XP_002537435.1| conserved hypothetical protein [Ricinus communis] gi|223516369|gb|EEF24949.1| conserved hypothetical protein [Ricinus communis] Length = 295 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 76/242 (31%), Gaps = 29/242 (11%) Query: 1 MTSFSHKK--------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 M + +H + + + I + ++ P L R G+ + ++ G ++ Sbjct: 1 MYALTHIRRMSNTSSIVAKNIQWLMDQRKTNPYELQRATGVPQPTIHRIL----TGESKD 56 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 P T+S+ + + L + S + K + +G G + + Sbjct: 57 PRTKSLQPLADHFGVPLADLRERDLSAPADALEGLKPGSFMRITEAGQGDQRFTLIPKVR 116 Query: 113 -------NKWNTVGVPEIRS-------PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 + ++ P + +++ + SM +GD+++ Sbjct: 117 LRLTAGISGYDVEPEPFDGTTAALPTGWIERHGYDRSKLISIVVRGESMETTLYEGDLVV 176 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIA 216 +N+A Q + G+ V K L L S N D + I Sbjct: 177 VNTADQKLIDGAVYAINYEGEPVVKRLTRD-AGQWWLTSDNPDQRRYYRRTCDETTKIIG 235 Query: 217 RI 218 R+ Sbjct: 236 RV 237 >gi|170781620|ref|YP_001709952.1| LexA repressor [Clavibacter michiganensis subsp. sepedonicus] gi|189046533|sp|B0RHB3|LEXA_CLAMS RecName: Full=LexA repressor gi|169156188|emb|CAQ01330.1| LexA repressor [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 29/226 (12%) Query: 2 TSFSHKKI--WEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPS 54 S S K+I E I R PS + GL +S ++ + + G R P+ Sbjct: 16 KSLSEKQISILEFIQRTIAGQGYPPSMREIGDAVGLASLSSVTHQLNQLELSGYLRRDPN 75 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 ++L +DLP + + + + P + Sbjct: 76 RPRALEVL----------IDLPGTGTAESGEPSTPVGDAAMVPMVGRIAAGIPITAEQMV 125 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLI 173 +P + + SM+ GD +++ GD + Sbjct: 126 EEVFPLPRQLVG-------KGDLFMLRVVGDSMIDAAICDGDWVVVRQQKTAENGDIVAA 178 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + KV +R L++ N + + +++ + +++ Sbjct: 179 MLD-DEATVKVF-RQRDGHTWLLARNSAFEPILGDFAEV--VGKVV 220 >gi|145219701|ref|YP_001130410.1| putative prophage repressor [Prosthecochloris vibrioformis DSM 265] gi|145205865|gb|ABP36908.1| putative prophage repressor [Chlorobium phaeovibrioides DSM 265] Length = 241 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 63/245 (25%), Gaps = 36/245 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I + + L +K G+ ++ + +G E + + Sbjct: 1 MDTVSTLGMRIRTVRRHYGLRQEEFGKKIGISGNRVSEIEN--NKGGTSASVLEELCRSF 58 Query: 63 AATNETICQLLDLP------------------------FSDGRTTEKKEKEIPLLYFPPS 98 ++E + E ++E L+ P Sbjct: 59 PVSHEWLLTGNGSMLRNKETGEESKGISERLTLLESRIGRIINVHENDDREPSLISVPLY 118 Query: 99 GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 S + P + K SM+ + GD L Sbjct: 119 SSTVPAGMPAVAAEEVETYLDFPRSWTGGR------KNVYALKVSGDSMMDIGIMPGDTL 172 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIA 216 ++ S G ++I ++ K L G + L N Y V D + Sbjct: 173 LVESRETARDGQ-VVIASLNSEVTVKTLCISDGGHVSLAPENRKYRPIPVTPESDFRIMG 231 Query: 217 RILWA 221 ++ A Sbjct: 232 -VVLA 235 >gi|253991045|ref|YP_003042401.1| hypothetical protein PAU_03571 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782495|emb|CAQ85659.1| Hypothetical Protein PAU_03571 [Photorhabdus asymbiotica] Length = 228 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 68/217 (31%), Gaps = 16/217 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K+ + + ++ L +A+ G+ P + +K P ++ I Sbjct: 8 RKEFADRLALACKKFGLDEHGRGVAIAKALGVTPKAASKWFNAES-----LPRQATMKGI 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + L K E + + G V + Sbjct: 63 ADYLRVDLAWLQLGI-------VKNADEQGKVEYAGKLKDGLVRVVGEAILGIDGAVDMV 115 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E + I + K + SM P + G+ +++ V+ GD + ++ R G + Sbjct: 116 EFHAGWLRICSSDRDAYGLKVKGDSMWPRIQSGEFVVIEPNTLVHPGDEVFVRTRNGHNM 175 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K++ R S+N + T+ D+ I + Sbjct: 176 IKIMNITRNGDYQFSSINSDHRPITIPKDDVAMIHYV 212 >gi|237748353|ref|ZP_04578833.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229379715|gb|EEO29806.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 228 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 18/216 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+++EA + H S LAR P + + + R S + + K Sbjct: 9 KRLYEAARVLKRIHG--QSELARAINASPQTIHNWQE-------RGISKQGMLKAQEVIG 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L + L+ S + + + Sbjct: 60 CSALWLETGSGPMSLNVLCNSSQ---LFSKTSQIPLIRPDQALKVNSTAAAPALGDPLGW 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + ++ + SM P++++GD +IL+ GD ++ K + Sbjct: 117 LFTHSNLSSRAYALEVSGNSMQPVFQEGDWIILDPMAVPEPGDFVVAKCGEKKELIFRKY 176 Query: 187 SRRG------RSIDLMSLNCCYPVDTVEMSDIEWIA 216 +G + +L+ LN +P ++ IE I Sbjct: 177 RPKGLDNSGKMTFELVPLNEDFPSLRSDILPIEIIG 212 >gi|225856824|ref|YP_002738335.1| transcriptional regulator [Streptococcus pneumoniae P1031] gi|225726261|gb|ACO22113.1| transcriptional regulator [Streptococcus pneumoniae P1031] Length = 227 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 14/217 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + E L+ S LA G+ S+ + + + + +I Sbjct: 7 LKEKRESQGLSQSQLASSLGISRASYFNWESGKT--KPNQNNLSKLSEIFNVDPRYFESE 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + + T+K +K F T + Sbjct: 65 FEIVETYLKLTKKNQKATLHYATELLNKQNAKVVEIPERFAYKVYEKLSAGTGTAYFDDG 124 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D SM P Y+ G + ++ G + K Sbjct: 125 NYDTVYFNRQFDYDFASWVSGVSMEPTYKNGSVALIKQTGFDYDG-AIYAIDWDSQTFIK 183 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + + L+SLN YP + I +I+ Sbjct: 184 KVYREENG-LRLVSLNRNYPDKFAPYDENPRIIGKIV 219 >gi|261345424|ref|ZP_05973068.1| peptidase, S24 family [Providencia rustigianii DSM 4541] gi|282566470|gb|EFB72005.1| peptidase, S24 family [Providencia rustigianii DSM 4541] Length = 230 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 65/227 (28%), Gaps = 16/227 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + NLT + LA G S + + + R + K L+ + + Sbjct: 3 ISERVKNKRILLNLTQAELAETVGTTQQSIEQLESGKTK---RPRFLPELAKALSCSVDW 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL----LYFPPSGSGGFFDSGVFPTGNK----WNT--- 117 + + + F+ F GN + Sbjct: 60 LVTGRENNNDSLPPENEWGSIKSWDSKTPLESDEVEVPFYKDIEFACGNGGCIDIDYNGF 119 Query: 118 -VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + G + SM P+ + ++ A + ++ + Sbjct: 120 KLRFSKSTLRRIGAPTDGSTIACFPANGDSMEPVIPNNAAVAIDMANKKIIDGKVYAIDQ 179 Query: 177 TGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222 G K+L R G + + S N Y + + + I R+ W S Sbjct: 180 DGLKRLKMLYRRPGGKLIIRSYNRDEYEDEEADEDSVTIIGRMFWYS 226 >gi|194468455|ref|ZP_03074441.1| transcriptional repressor, LexA family [Lactobacillus reuteri 100-23] gi|227544968|ref|ZP_03975017.1| repressor lexA [Lactobacillus reuteri CF48-3A] gi|300910001|ref|ZP_07127461.1| repressor lexA [Lactobacillus reuteri SD2112] gi|194453308|gb|EDX42206.1| transcriptional repressor, LexA family [Lactobacillus reuteri 100-23] gi|227185079|gb|EEI65150.1| repressor lexA [Lactobacillus reuteri CF48-3A] gi|300892649|gb|EFK86009.1| repressor lexA [Lactobacillus reuteri SD2112] Length = 208 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 57/221 (25%), Gaps = 42/221 (19%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGRNRWPS-TESIF 59 + I + E H P+ + GL TS ++ ++ ++ P E Sbjct: 12 VLNYIHKQVEDHGYPPTVREICSAVGLSSTSTVHGHISRLIEQGFLQKDPSKPRALEITP 71 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K L Q + + N Sbjct: 72 KGLDILGVKPIQKEIPMLGVVTAGQP----------------------ILAVENATEFFP 109 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P +N + TSM+ GD +I+ GD ++ Sbjct: 110 IPPSIQDNN-------DLFMLTIRGTSMIKAGIFNGDQVIVRKQSTAKNGDIVIAMNDDN 162 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ ++ + +++ Sbjct: 163 EATCKRFYKEK-TRFRLQPENDTMEPIFLDN--VKILGKVV 200 >gi|31544010|ref|NP_852735.1| putative CI protein [Haemophilus phage Aaphi23] gi|31408054|emb|CAD90788.1| putative CI protein [Haemophilus phage Aaphi23] Length = 238 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 64/242 (26%), Gaps = 27/242 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + + + N + L G+ + R E++ Sbjct: 1 MTTL-----ASRLAELMTQQNKSIRDLQDALGVTYEMARRYTLGTAT--PRDAKIEAMAV 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY------------FPPSGSGGFFDSGV 108 + + + + K + F+ Sbjct: 54 YFGVSPAYLKYGASEETEKQGQSTESIKSNVREVGAFDLWDRNTPLNSDEYAVPFYQDIR 113 Query: 109 FPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 GN +N + ++ SM P+ G + ++ Sbjct: 114 LAAGNGFADDIADYNNFKLRFSKATLRKQGVQYENAVCVVADGNSMEPVIPDGTTVGIDL 173 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILW 220 + ++ G + K+L + + + S N +P + +M DI I ++ W Sbjct: 174 GNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNSEEHPDEIADMQDISVIGKVFW 233 Query: 221 AS 222 S Sbjct: 234 YS 235 >gi|300785371|ref|YP_003765662.1| LexA family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794885|gb|ADJ45260.1| LexA family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 32/219 (14%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSK-RFGIEGRNRWPSTESIFKI 61 ++I AI R+ +PS L GL P+S +K +G R +T S Sbjct: 20 QQRILVAIRDWVVRYGYSPSTRELGEAVGLQSPSSVSKHLASLEDKGFLRRGATVS---- 75 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 R + + S G G + + Sbjct: 76 -------------------RPIDVRAFLNGPAAAEDGDSVPVPVVGDIAAGTPISAIEHT 116 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + + SM+ GDI+++ + + G + + Sbjct: 117 DDVLKLPRDLTGRGTVFGLRVRGDSMIDAAICDGDIVVVKQQSEAHSGQIVAAMID-EEA 175 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + RR + L N Y ++ + ++ Sbjct: 176 TVK-VYRRRDGHVYLEPRNPAYD--VIDGDRAVILGAVV 211 >gi|89894323|ref|YP_517810.1| hypothetical protein DSY1577 [Desulfitobacterium hafniense Y51] gi|219668746|ref|YP_002459181.1| SOS-response transcriptional repressor, LexA [Desulfitobacterium hafniense DCB-2] gi|123280013|sp|Q24X76|LEXA_DESHY RecName: Full=LexA repressor gi|254809094|sp|B8FWD3|LEXA_DESHD RecName: Full=LexA repressor gi|89333771|dbj|BAE83366.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539006|gb|ACL20745.1| SOS-response transcriptional repressor, LexA [Desulfitobacterium hafniense DCB-2] Length = 204 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 39/226 (17%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPS 54 S ++ I E I R+ PS + GL ++ + + E R P+ Sbjct: 3 PDLSQRQTDILEYIKRVIREKGYPPSVREIGDAVGLMSSSTVHGHLQTIEEKGYIRRDPT 62 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +IL + + F P + N Sbjct: 63 KPRAIEILDS--------------------SSDANEKKTVFVPIIGKVTAGQPILAQENI 102 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 +T +P + + + + SM+ GD++++ G+ ++ Sbjct: 103 EDTFPLPVDVVNSDTV-------FMLRVKGESMIDAGIMDGDLILVRQQKVARNGEIVVA 155 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N D+ + +++ Sbjct: 156 MID-EEATVKRFYKEK-TLIRLQPENPYMEPIY--SQDVTILGKVI 197 >gi|329889506|ref|ZP_08267849.1| peptidase S24-like family protein [Brevundimonas diminuta ATCC 11568] gi|328844807|gb|EGF94371.1| peptidase S24-like family protein [Brevundimonas diminuta ATCC 11568] Length = 152 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + IPLL +G GFFD P W+ +P A + Sbjct: 23 PHPRAIPLLGLARAGDEGFFDDAGLPMAEGWDQTELP----------AHKDSLFSLTIDG 72 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSIDLMSLNCCYP 203 SM P+YR GD +I++ ++ G+ +AK + + GR + L S+N Y Sbjct: 73 DSMEPVYRPGDRVIVDLDATEVRRGDRVVVRTAEGETLAKEIAALNGREVVLASVNPHYE 132 Query: 204 VDTVEMSDIEWIARILWASQ 223 + I W+ARILW SQ Sbjct: 133 PRILPRGQIRWMARILWVSQ 152 >gi|28871153|ref|NP_793772.1| repressor protein cI [Pseudomonas syringae pv. tomato str. DC3000] gi|28854403|gb|AAO57467.1| repressor protein cI [Pseudomonas syringae pv. tomato str. DC3000] Length = 234 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 20/207 (9%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 LT LA AG+ P S N+ R R+ + + K+L + ++ Sbjct: 32 LTQRKLAEAAGITPASVNQYLRGINPLNARFAAV--LAKMLE-------EPIESFSPRLA 82 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSPHNGIY--AIQTQDT 138 T + + + P + + G + P S + + Sbjct: 83 TEISEMANVGPMTQPRREATEYPLITWVDAGQGIESSASYPTGISDEWLSSTESAGPKGY 142 Query: 139 RHKTQDTSML----PLYRKGDILILNSAI-QVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192 + + SM P + +G +++ + G + + G+ K + G Sbjct: 143 WLRVKGKSMTSDTPPTFPEGTPILIRPEGFDLISGKFYVARNTVSGETTFKQFVMDAGVG 202 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 L+ LN Y ++ E I R + Sbjct: 203 Y-LVPLNPSYQPVVLD-DGWEIIGRAI 227 >gi|71736015|ref|YP_276778.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556568|gb|AAZ35779.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 243 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y + G + + Sbjct: 65 GPKHPNESANENTGDDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRMPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231 >gi|160946089|ref|ZP_02093303.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270] gi|158447821|gb|EDP24816.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270] Length = 207 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 64/207 (30%), Gaps = 12/207 (5%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 +T + LA+K G+ PT+ + +R P ++I + + + D Sbjct: 1 MTQAQLAKKLGVAPTTVSSWERNDNN-----PLMDNITLMAEIFDVPVSYFFDKKDGIIV 55 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141 E + + P + + V + + G Y+ K Sbjct: 56 NEPAIEYSVSPVLKTPLYGSIAAGALSLVDPVTESNVRYINLPAEALGKYSHAKGLFALK 115 Query: 142 TQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL---MS 197 SM + G + I+ D ++I + K + + S Sbjct: 116 VNGESMNKVIPNGSYIACKPIEIEDLKDDDIVIFSVDNEYSMKRFRRDDENRVLIFSPES 175 Query: 198 LNCCYPVDTVE---MSDIEWIARILWA 221 + Y V +D++ A+++W Sbjct: 176 TDRKYHDIVVPFDTPNDLKIYAKVIWY 202 >gi|257068245|ref|YP_003154500.1| SOS-response transcriptional repressor, LexA [Brachybacterium faecium DSM 4810] gi|256559063|gb|ACU84910.1| SOS-response transcriptional repressor, LexA [Brachybacterium faecium DSM 4810] Length = 234 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 25/223 (11%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTES 57 + ++ I E I+ P+ + GL +S ++ + +G R Sbjct: 24 LTRRQRLILETINEAVATRGYPPTMREIGDAVGLTSSSSVAHQLQSLERKGFLR--RDPK 81 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + P P + + Sbjct: 82 RPRAMEVVMPEADDAPTPPAVAAEPEISPSSV-----TVPLVGRIAAGVPITAEEQVEDV 136 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176 +P+ + SM+ GD +++ S G+ + Sbjct: 137 FTLPQRLVG-------DGDLFLLQVVGDSMIDAAICDGDWVVVRSQSTAERGEIVAAMID 189 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + +R + LM N + + +D+ + +++ Sbjct: 190 -GEATVKTFV-QRDDHVWLMPHNPAFAPILGDHADV--LGKVV 228 >gi|170719058|ref|YP_001784213.1| prophage repressor [Haemophilus somnus 2336] gi|168827187|gb|ACA32558.1| putative prophage repressor [Haemophilus somnus 2336] Length = 228 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 18/219 (8%) Query: 11 EAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E +D + L +A L P + +K +T + L+ T Sbjct: 12 ERLDLACKNKGLPNKGRGKQIADILKLTPKAVSKWFNAETM--PSTANTYVLADFLSVTP 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 E + F T + K P +G F + + ++ + + Sbjct: 70 EWLTFGDVKNFDKNATFVEVVKSFYYPLLSPVQAGYFTEVNLLSNTDEITQYEMISSQVK 129 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 K SM P +++GD+++++ I GD ++ + K Sbjct: 130 AG------QNAFYLKIVGNSMSPRFQEGDMVLIDPEIYPVPGDFVVAINEDNEATFKQYK 183 Query: 187 ------SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L+ LN + + + I+ I + + Sbjct: 184 ETGEVDEHGRKHFKLVPLNDNFGTLSSKHHKIKIIGKAV 222 >gi|227537268|ref|ZP_03967317.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242872|gb|EEI92887.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 16/221 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + ++ LT A + S + E P E + KI + Sbjct: 3 NIASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAE-----PKYELLKKIAEYFDL 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP-----PSGSGGFFDSGVFPTG--NKWNTVGV 120 T+ +L + D + L G N + Sbjct: 58 TMDELANDSIDDKWKPTPRSNASNLRVLSVTVDQQDRENIELVPVKASAGYLNGYGDPEY 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTG 178 + Q + + SMLPL I+ + + + G +I + Sbjct: 118 VAELPKFSLPMFNQGTYRAFEIKGDSMLPLPSGSVIIGEYVENWHDIKPGQTYIIVSKEE 177 Query: 179 DIVAKV--LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +V K + + + L+S N Y V DI + + Sbjct: 178 GVVYKRIAFKYKEEKGLKLVSDNKTYEPYWVGADDILEVWK 218 >gi|225076034|ref|ZP_03719233.1| hypothetical protein NEIFLAOT_01061 [Neisseria flavescens NRL30031/H210] gi|241760766|ref|ZP_04758857.1| transcriptional regulator [Neisseria flavescens SK114] gi|319639088|ref|ZP_07993845.1| transcriptional regulator [Neisseria mucosa C102] gi|224952749|gb|EEG33958.1| hypothetical protein NEIFLAOT_01061 [Neisseria flavescens NRL30031/H210] gi|241318663|gb|EER55215.1| transcriptional regulator [Neisseria flavescens SK114] gi|317399666|gb|EFV80330.1| transcriptional regulator [Neisseria mucosa C102] Length = 228 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL S + Sbjct: 18 QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPDS 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134 E + G+ + + Y I+ Sbjct: 73 EAPKATATDTLGNPVDIDEFVFVPRYDIQAAAGHGQLVGDEQPMFAMAFRRYWIENYVTR 132 Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N D L + +++ K L G Sbjct: 133 DIKNLSVISVKGDSMEGVLNDGDTILINHGQTT-PRDGLYVLRLNENLLVKRLQLIPGGI 191 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 ++++S N YP +++ D+ I R+ W Sbjct: 192 VNVISANEAYPTFEIDLKNPTDDVAIIGRVEW 223 >gi|134299726|ref|YP_001113222.1| SOS-response transcriptional repressor, LexA [Desulfotomaculum reducens MI-1] gi|172044299|sp|A4J5P4|LEXA_DESRM RecName: Full=LexA repressor gi|134052426|gb|ABO50397.1| SOS-response transcriptional repressor, LexA [Desulfotomaculum reducens MI-1] Length = 214 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 21/224 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTE 56 M + +++ I + PS + GL +S + KR +G R T+ Sbjct: 1 MLNAREEEVLNVIIENVKLKGYPPSVREIGEAVGLSSSSTVHSYLKRLEQKGYLRRDPTK 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + +L P S T+E L P + N Sbjct: 61 PRA-----IEVIMSELSKNPSSHPLTSELSRYSDEELISIPLLGEVAAGVPLLAVENYDE 115 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 V +P + + + + SM GD++++ V+ GD + Sbjct: 116 KVTLPRSFTGY-------GEFFMLSVRGDSMIEAGILPGDLVLVRRQESVSNGDIAVAL- 167 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N V+ +++ + +++ Sbjct: 168 LEDEATVKRFYKEKN-RIRLQPENSLLSPIYVQ--EVKILGKVV 208 >gi|294500838|ref|YP_003564538.1| LexA repressor [Bacillus megaterium QM B1551] gi|295706182|ref|YP_003599257.1| LexA repressor [Bacillus megaterium DSM 319] gi|52694114|emb|CAG24077.1| DinR protein [Bacillus megaterium] gi|294350775|gb|ADE71104.1| LexA repressor [Bacillus megaterium QM B1551] gi|294803841|gb|ADF40907.1| LexA repressor [Bacillus megaterium DSM 319] Length = 205 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 56/218 (25%), Gaps = 32/218 (14%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPSTESIFKI 61 + I + I + PS + GL ++ + R +G R Sbjct: 7 QQDILDFIKHEVKLKGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIRR--------- 57 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T ++L L + + + P + N +P Sbjct: 58 -DPTKPRAIEVLQLDEVNIPKSN--------VINVPVIGKVTAGLPITAVENVEEYFPLP 108 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + SM GD++I+ N GD ++ + Sbjct: 109 DKFVSPDD------HVFMLEIMGESMIEAGILDGDMVIVRQQQTANNGDIVVAMTEDNEA 162 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + L N + + + ++ Sbjct: 163 TVKRFFKEEN-FVRLQPENSTMAPIILRH--VTILGKV 197 >gi|257869424|ref|ZP_05649077.1| transcriptional repressor LexA [Enterococcus gallinarum EG2] gi|257803588|gb|EEV32410.1| transcriptional repressor LexA [Enterococcus gallinarum EG2] Length = 206 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 59/230 (25%), Gaps = 42/230 (18%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50 M + + I + I P+ + L TS ++ ++ G+ Sbjct: 1 MAKRTENRQIEILKFIHTRVTEKGYPPTVREIGEAVQLSSTSTVHGHLSRLEKKGLI--L 58 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R P+ ++ T+ EK P + Sbjct: 59 RDPTKPRAIEL--------------------TSSGLEKIDVQPNSIPMLGVVTAGEPILA 98 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 + + +P + + SM+ GD +I+ GD Sbjct: 99 VEDASDFFPIPPDLANST------GSLFMLTIRGESMINAGILDGDQVIVRKQQSAQNGD 152 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + I L N + D+ + ++ Sbjct: 153 IVIAMTDEDEATCKRFFKEQD-HIRLQPENDYLEPIILP--DVTILGLVV 199 >gi|262066050|ref|ZP_06025662.1| LexA repressor [Fusobacterium periodonticum ATCC 33693] gi|291380300|gb|EFE87818.1| LexA repressor [Fusobacterium periodonticum ATCC 33693] Length = 219 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 69/215 (32%), Gaps = 13/215 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R+ +H + GLA+K L T +K ++ S I +++ + Sbjct: 4 GTTLKRIRLKHKDSLRGLAKKINLHFTFIDKVEKGTAP-----ISNNFIERVIEVYPDEE 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP-HN 128 L + + E + S G G + + P+ P Sbjct: 59 KTLKKEYLKENLPKVFNKDESIKI-LEDSEVLNLPVYGKASAGRGYLNMDKPDYYMPITK 117 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-S 187 G +++ + SM P G+ +++ +++ + + K + Sbjct: 118 GDFSL--NSFFVEITGNSMEPTLEDGEYALVDPNNTAYVKNKIYVVTYNDEGYIKRVELK 175 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + ++I L S N Y + + R++ Sbjct: 176 EKKKTITLKSDNPDYDDIDIPEEMQEYFKINGRVV 210 >gi|167587266|ref|ZP_02379654.1| LexA repressor [Burkholderia ubonensis Bu] Length = 215 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 61/214 (28%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A L G G+ Sbjct: 54 GVIELAAG----------ASRGIRLLGGDDAPHQFTLPHAALMQLSLPLVGRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHFACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L R G ++L++ N Y V+ Sbjct: 163 LGDDVTVKRLKRRPGG-LELIAENPDYENIFVKA 195 >gi|227529091|ref|ZP_03959140.1| repressor lexA [Lactobacillus vaginalis ATCC 49540] gi|227350935|gb|EEJ41226.1| repressor lexA [Lactobacillus vaginalis ATCC 49540] Length = 210 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 30/221 (13%) Query: 5 SHKKI--WEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 S K+I I + + H P+ + GL TS S + S + Sbjct: 6 SQKQIAVLSCIYKHVKDHGYPPTVREICGIVGLSSTSTVHSHLNNLIKEGYLQKDPSKPR 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L T + + L P + + + + Sbjct: 66 ALEITKQGLDLLGIEPEQKEIPMVGVVTAGQPI---------------LAVEDTTDYFPL 110 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + K TSM+ GD +I+ G+ ++ + Sbjct: 111 PPTI-------KDASGLFMLKIHGTSMIKAGILDGDDVIVRKQSTAKDGEIVIAMTSDNE 163 Query: 180 IVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N P ++ + + +++ Sbjct: 164 ATCKRFYKEPENKRYRLQPENDTMPPIYLDN--VTILGKVI 202 >gi|307701883|ref|ZP_07638892.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307616698|gb|EFN95886.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|332362037|gb|EGJ39839.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 227 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 56/217 (25%), Gaps = 14/217 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + E L+ S LA G+ S+ + + + + +IL Sbjct: 7 LKEKRESQGLSQSQLASSLGISRVSYFNWESGKT--KPNQNNLSKLSQILTVDPCYFESE 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + + TEK +K F T + Sbjct: 65 YEIVETYLKLTEKNQKATLHYATELLNKQNEKVVDIPERFAYKVYEKLSAGTGTAYFDDG 124 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D SM P Y G + ++ G + G K Sbjct: 125 NYDTVYFNHQFDYDFASWVFGNSMEPTYENGSVALIKQTGFDYDG-AIYAIDWDGQTYIK 183 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + + L+SLN Y + I +I+ Sbjct: 184 KVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 219 >gi|257792947|ref|YP_003186346.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479639|gb|ACV59957.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 223 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 59/203 (29%), Gaps = 4/203 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + ++ + NLT + LA +G+ ++ + GR + + + + L E Sbjct: 3 QFGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQR-GRPKPDTLKKLASALKVPYE 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSP 126 + + T + P+ G G + + Sbjct: 62 DLLLHAGVLNEQISRTSESRDLKPVDPSWYKRQVPIPVLGSIRAGTPVEMLALNSSEFVL 121 Query: 127 HNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + SM+ GD++I+ + D ++ + K + Sbjct: 122 VDSDLLGNHEGFALEVVGDSMIGDYIFPGDLVIVKYTSNFSPQDICVVAINGEEATLKRV 181 Query: 186 ISRRGRSIDLMSLNCCYPVDTVE 208 + I L N Sbjct: 182 KCQGDICI-LTPSNPSMEPMVYN 203 >gi|124515630|gb|EAY57140.1| putative phage repressor [Leptospirillum rubarum] Length = 218 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 54/200 (27%), Gaps = 12/200 (6%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + S LA K G++ + ++ + + + LD Sbjct: 20 SQSELAEKIGVETSYLSRVIGKNASKNI----GSKVARKVERALFLPSGWLDKEEIQSEG 75 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 IP+ G + V V + + Sbjct: 76 DGGALTTIPVYAITAGMGRGRLVD----SEEILKIVVVDQSTFGDMRLSGTGHGIVAVYA 131 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P I+ ++ + D + + I K L + ++S N Y Sbjct: 132 DGESMEPTIPPKSIVFVDKNQRDLR-DGVYLVRLEDMIYVKRLQRLPDHKMKVISDNPIY 190 Query: 203 PVDTVEM---SDIEWIARIL 219 V++ D E + +++ Sbjct: 191 KPFDVDLKNGDDFEILGKVV 210 >gi|46201984|ref|ZP_00054008.2| COG2932: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 230 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 16/222 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++ + L+ G + ++ F G + + + + + Sbjct: 9 RLLQLVQEQKTDLKNLSLAIGRNAAYLHQ---FVFRGTPKILAEDVRQALADHLAVEEDE 65 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------VGVPE 122 L + +++ L P G P+ Sbjct: 66 LRHSQIPTRKPRSPNQRDDVGLALPDGFLPVSEIDVRASAGYGAVHDGLEETKATWLFPD 125 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + A + SM PL GD ++++++ +V + + +V Sbjct: 126 AVVRYEFR-AQPSDLRMITITGDSMEPLLSSGDRILIDTSQKVPVPPGIFVIWDGMGLVT 184 Query: 183 KVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 K + ++ + S+N Y +I I R++WA Sbjct: 185 KRIEHIPHSDPPTVVIRSINPEYQTYERTADEINIIGRVIWA 226 >gi|309704472|emb|CBJ03821.1| putative phage repressor protein [Escherichia coli ETEC H10407] Length = 216 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 31/222 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + + NLT LA G++ + ++ + P+ ++ + A Sbjct: 5 DRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQ-----PNGANLQALANALKCDPL 59 Query: 71 QLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L+ S K++PL+ + +GS + GV + V + S Sbjct: 60 WLVSGKGSPEPKINLKPEIFAVKKVPLISWVQAGSWTMTEPGVRK-EDAEEWVYTTALVS 118 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNS---AIQVNCGDRLLIKPRT 177 + + SM P +G I+I+ + G ++ Sbjct: 119 EM---------AFALRVRGDSMTNPLGSPSIPEGSIVIVEPDIIDTECINGKIVVAHING 169 Query: 178 G-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G + K + L+ LN Y + + + Sbjct: 170 GQEATLKKFVEDWPNRY-LVPLNPNYKTIEC-GENCRIVGLV 209 >gi|255972779|ref|ZP_05423365.1| transcriptional repressor LexA [Enterococcus faecalis T1] gi|255975835|ref|ZP_05426421.1| transcriptional repressor LexA [Enterococcus faecalis T2] gi|256619081|ref|ZP_05475927.1| transcriptional repressor LexA [Enterococcus faecalis ATCC 4200] gi|256958998|ref|ZP_05563169.1| transcriptional repressor LexA [Enterococcus faecalis DS5] gi|256961909|ref|ZP_05566080.1| transcriptional repressor LexA [Enterococcus faecalis Merz96] gi|256965107|ref|ZP_05569278.1| transcriptional repressor LexA [Enterococcus faecalis HIP11704] gi|257079029|ref|ZP_05573390.1| transcriptional repressor LexA [Enterococcus faecalis JH1] gi|257082532|ref|ZP_05576893.1| transcriptional repressor LexA [Enterococcus faecalis E1Sol] gi|257085165|ref|ZP_05579526.1| transcriptional repressor LexA [Enterococcus faecalis Fly1] gi|257086726|ref|ZP_05581087.1| transcriptional repressor LexA [Enterococcus faecalis D6] gi|257089903|ref|ZP_05584264.1| transcriptional repressor lexA [Enterococcus faecalis CH188] gi|257416111|ref|ZP_05593105.1| transcriptional repressor LexA [Enterococcus faecalis AR01/DG] gi|257419314|ref|ZP_05596308.1| transcriptional repressor [Enterococcus faecalis T11] gi|257422601|ref|ZP_05599591.1| transcriptional repressor [Enterococcus faecalis X98] gi|294781669|ref|ZP_06747004.1| repressor LexA [Enterococcus faecalis PC1.1] gi|255963797|gb|EET96273.1| transcriptional repressor LexA [Enterococcus faecalis T1] gi|255968707|gb|EET99329.1| transcriptional repressor LexA [Enterococcus faecalis T2] gi|256598608|gb|EEU17784.1| transcriptional repressor LexA [Enterococcus faecalis ATCC 4200] gi|256949494|gb|EEU66126.1| transcriptional repressor LexA [Enterococcus faecalis DS5] gi|256952405|gb|EEU69037.1| transcriptional repressor LexA [Enterococcus faecalis Merz96] gi|256955603|gb|EEU72235.1| transcriptional repressor LexA [Enterococcus faecalis HIP11704] gi|256987059|gb|EEU74361.1| transcriptional repressor LexA [Enterococcus faecalis JH1] gi|256990562|gb|EEU77864.1| transcriptional repressor LexA [Enterococcus faecalis E1Sol] gi|256993195|gb|EEU80497.1| transcriptional repressor LexA [Enterococcus faecalis Fly1] gi|256994756|gb|EEU82058.1| transcriptional repressor LexA [Enterococcus faecalis D6] gi|256998715|gb|EEU85235.1| transcriptional repressor lexA [Enterococcus faecalis CH188] gi|257157939|gb|EEU87899.1| transcriptional repressor LexA [Enterococcus faecalis ARO1/DG] gi|257161142|gb|EEU91102.1| transcriptional repressor [Enterococcus faecalis T11] gi|257164425|gb|EEU94385.1| transcriptional repressor [Enterococcus faecalis X98] gi|294451221|gb|EFG19688.1| repressor LexA [Enterococcus faecalis PC1.1] gi|323480742|gb|ADX80181.1| LexA repressor [Enterococcus faecalis 62] Length = 206 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 56/225 (24%), Gaps = 32/225 (14%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M + + + + I E P+ + + L TS +E + Sbjct: 1 MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + + T E + EK P + Sbjct: 61 PTKPRAIELTPEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEAS 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + +P + SM+ GD +I+ N GD ++ Sbjct: 104 DFFPLPPDLRTEENAL------FMLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAM 157 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ + + +++ Sbjct: 158 TDEDEATCKRFFR-EVDHIRLQPENDALAPILLDN--VTILGKVV 199 >gi|312796546|ref|YP_004029468.1| LexA repressor [Burkholderia rhizoxinica HKI 454] gi|312168321|emb|CBW75324.1| LexA repressor (EC 3.4.21.88) [Burkholderia rhizoxinica HKI 454] Length = 235 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 24/216 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 21 MTKLTARQQQVYDLIRRAIERTGFPPTRAEIAAELGFSSA-------NSAEEHLRALARK 73 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I L T L G G+ Sbjct: 74 GVIELAAGASRGIRLLSMEDGPHQYTLPHPAVMQLSLPLV----------GRVAAGSPIL 123 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + D K + SM GD+L + V G ++ + Sbjct: 124 AQEHIAQHYACDPALFVSRPDYLLKVRGMSMRDAGIFDGDLLAVQKQHDVKEGQIVVAR- 182 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K I+L++ N Y V Sbjct: 183 LGDDVTVKRFHRLVNG-IELIAENPDYENIIVSPGQ 217 >gi|184155184|ref|YP_001843524.1| LexA repressor [Lactobacillus fermentum IFO 3956] gi|260662316|ref|ZP_05863212.1| LexA repressor [Lactobacillus fermentum 28-3-CHN] gi|229621218|sp|B2GBL2|LEXA_LACF3 RecName: Full=LexA repressor gi|183226528|dbj|BAG27044.1| transcriptional repressor [Lactobacillus fermentum IFO 3956] gi|260553699|gb|EEX26591.1| LexA repressor [Lactobacillus fermentum 28-3-CHN] gi|299783097|gb|ADJ41095.1| LexA repressor [Lactobacillus fermentum CECT 5716] Length = 208 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 42/226 (18%) Query: 5 SHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGRNRWPS 54 ++K+ + I + + H P+ + GL TS N+ K+ ++ P Sbjct: 6 TNKQMAVLSFIHKQVDAHGYPPTVREICGAVGLSSTSTVHGHINRLIKKGYLKKDPSKPR 65 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 I + P P + + Sbjct: 66 ALEI---------------------TPAGLEVLGITPKQTQIPLLGVVAAGEPILAVQDA 104 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + +P H+ Q TSM+ + GD +I+ N GD ++ Sbjct: 105 TDFFPIPPSIPDHD-------DLFMLTIQGTSMINIGILNGDKVIVRRQETANNGDIVIA 157 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N + D+ + +++ Sbjct: 158 MTSDNEATCKRFFK-EQGHIRLQPENDTLAPIIL--DDVTILGKVV 200 >gi|120610290|ref|YP_969968.1| putative prophage repressor [Acidovorax citrulli AAC00-1] gi|120588754|gb|ABM32194.1| putative prophage repressor [Acidovorax citrulli AAC00-1] Length = 221 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 19/221 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL-AAT 65 + W + + L+ LA G+ S K + G G + + Sbjct: 3 EDYWSRLKPAMDAAKLSAQQLADAMGISYQSVKKVRDGGSFGMVNNLKAAKLLGLSPEWL 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 Q K + PL+ + +G P G+ P Sbjct: 63 ATGKGQHPTTSNVAAGPNIKGKGRYPLISWVQAGEWTDICDNFQP-GDADEW---PPSHH 118 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP------LYRKGDILILNSAIQVNCGDRL-LIKPRTG 178 + SM + +G +L +N + G + + + Sbjct: 119 NLGD------CGYMLRVHGDSMTAPAGSPYSFPEGVLLHVNPDKEPTPGQFVIVRRSGEN 172 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L + L ++N +P + + + + ++ Sbjct: 173 VATFKRLA-LVDGELFLEAINPDWPKRYIPLKEGDVFCGVV 212 >gi|148379754|ref|YP_001254295.1| LexA repressor [Clostridium botulinum A str. ATCC 3502] gi|153932066|ref|YP_001384051.1| LexA repressor [Clostridium botulinum A str. ATCC 19397] gi|153936246|ref|YP_001387593.1| LexA repressor [Clostridium botulinum A str. Hall] gi|171769165|sp|A7FUK4|LEXA_CLOB1 RecName: Full=LexA repressor gi|172047888|sp|A5I2R7|LEXA_CLOBH RecName: Full=LexA repressor gi|148289238|emb|CAL83334.1| SOS regulatory protein [Clostridium botulinum A str. ATCC 3502] gi|152928110|gb|ABS33610.1| LexA repressor [Clostridium botulinum A str. ATCC 19397] gi|152932160|gb|ABS37659.1| LexA repressor [Clostridium botulinum A str. Hall] gi|322806032|emb|CBZ03599.1| sos-response repressor and protease LexA [Clostridium botulinum H04402 065] Length = 201 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 56/220 (25%), Gaps = 37/220 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFK 60 +++ I + PS + + GL TS KR EG + S+++ Sbjct: 8 KQNEVYNFIKLQIKEKGYPPSVREICKAVGLSSTSSVHFHLKRLEKEGLIKRDSSKTRA- 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + P + + N + + Sbjct: 67 ---------------------IEIVDPTSKKEVINVPIVGTITAGNPILAIENIEDVFPL 105 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + K SM GD+ I+ N GD ++ + Sbjct: 106 PIDYVKNT------KDLFMLKVSGESMIEAGILNGDLAIIEKTDSANNGDIVVALID-NE 158 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N + + + + R++ Sbjct: 159 ATLKRFFKES-SYIRLQPENKSMKPIIL--ENCKVLGRLV 195 >gi|297567214|ref|YP_003686186.1| peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM 9946] gi|296851663|gb|ADH64678.1| Peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM 9946] Length = 236 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 62/231 (26%), Gaps = 28/231 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 AI + + R G L+ T ++ +R I ST + +L A Sbjct: 8 SAIRERRRELGKSQN---RIVGESEGRLNQTELSRLERGLIHPTL-DLSTAKLHALLEAL 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW------NTVG 119 + + + + E F G G ++ Sbjct: 64 EWSPSDFAEATRLEYPGLPAQVSEQMRRIEVQPEWQAFAVYGSVSAGAGESEPLEGESIA 123 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM--------LPLYRKGDILILNSAIQVNCGDRL 171 +P G+ + M GD + ++ + GD + Sbjct: 124 IPAEILRRKGV--KPQNVRVYLVNGDCMISEGASRQEKSIAPGDYIAVDRGRRAVSGDIV 181 Query: 172 LIKPRTGD-IVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220 + + +V K I L +PV + + D+ I + W Sbjct: 182 VAWWPREEKLVVKRY-KVEKEGIRLYPTQPAHPVLVLGLEEDLYIIGPVFW 231 >gi|34495811|ref|NP_900026.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34101666|gb|AAQ58034.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 248 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 70/227 (30%), Gaps = 37/227 (16%) Query: 24 PSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 P A + GL+ SF N + G+ P + KI A + + LL Sbjct: 23 PYAWAARNGLNKGSFTNMWYKGGV------PRIGTAQKIAANSGCRVEWLLYGEGPMQDE 76 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY----------- 131 + P D P G + +P + + Sbjct: 77 CAQAHDAPMPAGLPALSPLADADEHEVPAGVQEEFCFIPRYNLKASAGFGTSAAGEQPMF 136 Query: 132 --------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 A + SM + D +++N + + G+ L + Sbjct: 137 YMAFRRYWVKNYLNASPRNLVVISVKGDSMSGVLEDRDTILVN-TAERHPGEGLFVIRIG 195 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIARILW 220 DI K L G ++ + S N Y TV++S + E I R++W Sbjct: 196 DDIFVKQLQRLPGGAVQVKSANPLYETFTVDLSRASGEFEVIGRVVW 242 >gi|326564882|gb|EGE15086.1| peptidase S24-like protein [Moraxella catarrhalis 12P80B1] Length = 234 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 16/225 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 +++ NL+ L+ K G++ + + + + R + + + L + Sbjct: 7 RLNQAMSAKNLSLRDLSEKTGINYEMIRRYSKG--QAKPRNDKMKLLAQCLGVPITWLDY 64 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGVPEIRSPHN-- 128 + + + F F G+ P Sbjct: 65 GEGEMTKNNDKLAPITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMG 124 Query: 129 -----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + D SM P + GD + ++ + R+ + K Sbjct: 125 RRTLSNLGVMPINAFAVTACDDSMTPYVQDGDTIYIDKRRKEVKDGRIFAIRFGELCLCK 184 Query: 184 VLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 L + ++S N +P + + E I + S Sbjct: 185 RLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 229 >gi|148747754|ref|YP_001285833.1| putative S24-like peptidase [Geobacillus virus E2] gi|113715696|gb|ABI36845.1| putative S24-like peptidase [Geobacillus virus E2] Length = 229 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 27/236 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFN-KSKRFGIEGRNRWPSTESI 58 M + ++I E + ++ + A G+ PT+ N R + S +++ Sbjct: 1 MIEVTKEEIVE---HLMKKAGYSSRRQFAEAIGIPPTTLNSMLTRGLGKA-----SIDNV 52 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--N 116 K+ T+ +L + + + + + + G +G T + + Sbjct: 53 LKVCKGLGITVEELEMMEANGWSEPRRDQNKPHSIKL-ELPLYGSIAAGALSTVDPITKD 111 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLI 173 V + G YA + SM + G + +++ ++ D ++ Sbjct: 112 NVEYIALPKHMLGKYADSKDLFALRVNGESMNKVIPNGSYVACKPIDTIDELKEDDIVIF 171 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCC-----YPVDTVEMS---DIEWIARILWA 221 + K + + S Y V D++ A+++W Sbjct: 172 SHD-NEYSMKRFRKDEENRLLIFS--PESTFKKYHDIVVPYDTVNDLKIYAKVIWY 224 >gi|90961516|ref|YP_535432.1| LexA repressor [Lactobacillus salivarius UCC118] gi|227890603|ref|ZP_04008408.1| LexA repressor [Lactobacillus salivarius ATCC 11741] gi|123391376|sp|Q1WUI6|LEXA_LACS1 RecName: Full=LexA repressor gi|90820710|gb|ABD99349.1| LexA repressor [Lactobacillus salivarius UCC118] gi|227867541|gb|EEJ74962.1| LexA repressor [Lactobacillus salivarius ATCC 11741] gi|300214355|gb|ADJ78771.1| LexA repressor [Lactobacillus salivarius CECT 5713] Length = 206 Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 38/222 (17%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESI 58 I I P+ + GL TS +K + G+ R P+ Sbjct: 8 QHDILRYIFSHVSDSGYPPTVREICNAVGLSSTSTVHGHLSKLESKGLI--KRDPTKPRA 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +I L + + +IP++ +G + + Sbjct: 66 IEI------------TLAGLEMLDELPNKTQIPIVGTVTAG------EPILAVEENRDYF 107 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + SM+ GD +I+ N G+ ++ Sbjct: 108 PLPP-------YFESADDLFMLSIRGESMINAGILDGDQVIVRKQSSANNGEIVIAMTEE 160 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N + ++ + +++ Sbjct: 161 NEATCKRFFK-EDGYYRLQPENDTMDPIIL--ENVTILGKVV 199 >gi|261256870|ref|ZP_05949403.1| putative repressor protein of prophage [Escherichia coli O157:H7 str. FRIK966] Length = 217 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 31/222 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + + NLT LA G++ + ++ + P+ ++ + A Sbjct: 6 DRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQ-----PNGANLQALANALKCDPL 60 Query: 71 QLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L+ S K++PL+ + +GS + GV + V + S Sbjct: 61 WLVSGKGSPEPKINLKPEIFAVKKVPLISWVQAGSWTMTEPGVRK-EDAEEWVYTTALVS 119 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNS---AIQVNCGDRLLIKPRT 177 + + SM P +G I+I+ + G ++ Sbjct: 120 EM---------AFALRVRGDSMTNPLGSPSIPEGSIVIVEPDIIDTECINGKIVVAHING 170 Query: 178 G-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G + K + L+ LN Y + + + Sbjct: 171 GQEATLKKFVEDWPNRY-LVPLNPNYKTIEC-GENCRIVGLV 210 >gi|148273199|ref|YP_001222760.1| LexA repressor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|172047228|sp|A5CSL0|LEXA_CLAM3 RecName: Full=LexA repressor gi|147831129|emb|CAN02081.1| SOS repressor protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 64/226 (28%), Gaps = 29/226 (12%) Query: 2 TSFSHKKI--WEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPS 54 S S K+I E I R PS + GL +S ++ + + G R P+ Sbjct: 16 KSLSDKQISILEFIQRTIAGQGYPPSMREIGDAVGLASLSSVTHQLNQLELSGYLRRDPN 75 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 ++L + + + + P + Sbjct: 76 RPRALEVLIDLPGSGA----------AESGEPSTPVGDAAMVPMVGRIAAGIPITAEQMV 125 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLI 173 +P + + SM+ GD +++ GD + Sbjct: 126 EEVFPLPRQLVG-------KGDLFMLRVVGDSMIDAAICDGDWVVVRQQKTAENGDIVAA 178 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + KV +R L+ N + + +++ + +++ Sbjct: 179 MLD-DEATVKVF-RQRDGHTWLLPRNSAFEPILGDFAEV--VGKVV 220 >gi|291302021|ref|YP_003513299.1| SOS-response transcriptional repressor, LexA [Stackebrandtia nassauensis DSM 44728] gi|290571241|gb|ADD44206.1| SOS-response transcriptional repressor, LexA [Stackebrandtia nassauensis DSM 44728] Length = 227 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 56/217 (25%), Gaps = 28/217 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +KI I PS + GL S + ++ + Sbjct: 30 QRKILSCIRDSVADRGYAPSVREIGHVVGLASASSVAYQLNQLQRK-------------- 75 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + ++ + E + P + + +P Sbjct: 76 GFLRKDARRPRAVDIRPGSSGEAEGLRKAPKYVPVLGEIAAGTPILAEERVEEMFPLPAE 135 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + K + SM GD +++ + + G+ + G+ Sbjct: 136 -------FVGEGDVFLLKVKGDSMIEAAITDGDWVVVRQQPEAHSGEIVAAMID-GEATV 187 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R + L+ N Y + + + R++ Sbjct: 188 KTFKRR-DGHVVLLPANPMYDPI--PADEAQILGRVV 221 >gi|42524864|ref|NP_970244.1| transcriptional repressor of the SOS regulon [Bdellovibrio bacteriovorus HD100] gi|39577074|emb|CAE78303.1| transcriptional repressor of the SOS regulon [Bdellovibrio bacteriovorus HD100] Length = 240 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 66/239 (27%), Gaps = 25/239 (10%) Query: 1 MTSFS--------HKKIWEAIDRMAERHNLTPS--GLARKAGLDP-TSFNKS-KRFGIEG 48 MT + K + E I+ ++PS + GL S K+ +G Sbjct: 1 MTMKTPLPPLTPKEKSVLEFIEAHILSSGVSPSYQEIKDHFGLASFNSVQNYLKQLTNKG 60 Query: 49 RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 P +++ + + + L T + L S G Sbjct: 61 YISNP--QNLKRAIQVLHSASAVQDQLQSKTVSTKTGSPRTQLLQARDEILSLPLL--GK 116 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 G + E + ++ K Q SM DI+++ N Sbjct: 117 VAAGQPIEAIKHDEFVDVPPSMVRNPSKSFALKVQGDSMIEDGIFDEDIILIQKQNSANN 176 Query: 168 GDRLLIKPRTGDIVAKVLISRR-------GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K R + ++L N ++E ++ Sbjct: 177 GDIIV-ATVDNEATVKRFYLRPRPETGDADKMVELRPSNSTMKSMWYTPDEVEIRGIVV 234 >gi|147668743|ref|YP_001213561.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269691|gb|ABQ16683.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 210 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 7/189 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + ER + LA +AG+ +S + P E+ KI Sbjct: 3 NLGLIIKELRERRGWPQTELADRAGISRSSLATIEIGRSV-----PKVETSIKIAKVFGM 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T+ +L + T + E L + F + V P Sbjct: 58 TVEELYSKAGYETGKTVVETTEDILERLRLASPIAVPVYTDFVIHAG-DNVEAPIEYIYL 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 A+ + + M P + GDI I++ I G+ +L + +IV + Sbjct: 117 ARPKAVGKNIEAYLIKGQCMEPDIQDGDIAIVDRDIAPEKGNIILCLINS-EIVIGRYLL 175 Query: 188 RRGRSIDLM 196 + + Sbjct: 176 DKEGKPYIQ 184 >gi|299534261|ref|ZP_07047610.1| putative phage repressor [Comamonas testosteroni S44] gi|298717719|gb|EFI58727.1| putative phage repressor [Comamonas testosteroni S44] Length = 226 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 64/230 (27%), Gaps = 29/230 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNL---------TPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 M+S S + ++ + R +PS L G + ++ + +R Sbjct: 11 MSSLSEIR-KHNLNALCVRRGWVSRKNPDAGSPSDLVNLLGRSSSFWSNRLQG-----SR 64 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 E +I L DG + +L G V Sbjct: 65 DIGAELAREIEEKL------DLPKYSLDGDEESSDFVGVSILTVEVGAGPGRLVEIVEEA 118 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G + R + SM P + G +L++N A + + Sbjct: 119 G------TLQFRRDFLRNAGVSPANAAIVTVRGASMEPTIKDGAVLLINKADREPRAGHI 172 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARILW 220 G+++ K + S N + ++ ++ R +W Sbjct: 173 YAFSWDGEMMVKRFFKVNDGWVA-RSDNPDHDDILIDGATETAVQGRAIW 221 >gi|330957725|gb|EGH57985.1| peptidase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 218 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H++I +AI + +A + G+ ++ + + E+++ + Sbjct: 1 MTRHERIAKAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121 AT L + L P S + G+ V P Sbjct: 53 RATGFRAEWLAIGEGPEKAPEFD---ANVALIDQPKMSFRYPVISWVSAGSWEEAVQPYP 109 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209 >gi|227498517|ref|ZP_03928663.1| SOS-response transcriptional repressor [Acidaminococcus sp. D21] gi|226903975|gb|EEH89893.1| SOS-response transcriptional repressor [Acidaminococcus sp. D21] Length = 214 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 56/219 (25%), Gaps = 33/219 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 + I E I +N PS + + GL ++ N K+ G W Sbjct: 18 QEMILEFIRSYISENNYPPSVREIGKGVGLASSASVHNNMKKLASLGFLNW--------- 68 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 +K++ + + +G + + + +P Sbjct: 69 -------DTDKPRTYGLVSDEAWRKKEVVGVPLVGAVHAG----DPILADEHIEDMYPIP 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + SM D + + GD ++ + Sbjct: 118 TELLGTKD------DVFMMVVEGDSMKDAGILDRDYVFVRRQDYAQNGDIVVALLNGEET 171 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L+ N Y V +I+ ++ Sbjct: 172 TIKRYFREL-KQIRLVPENSAYSPI-VGTDNIKITGVVV 208 >gi|187923762|ref|YP_001895404.1| LexA repressor [Burkholderia phytofirmans PsJN] gi|229621206|sp|B2T3L9|LEXA_BURPP RecName: Full=LexA repressor gi|187714956|gb|ACD16180.1| transcriptional repressor, LexA family [Burkholderia phytofirmans PsJN] Length = 216 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 59/213 (27%), Gaps = 23/213 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G + S E Sbjct: 1 MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSAN----------------SAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA + L G G+ Sbjct: 45 EHLRALARKGVIELAAGASRGIRLLAGPEDSPHQFTLPHASIMQLSLPLIGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 105 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKRSEAKDGQIIIAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 D+ K L R ++L++ N Y VE Sbjct: 164 LGDDVTVKRLKRRPNG-LELIAENPDYENIFVE 195 >gi|323440314|gb|EGA98028.1| hypothetical protein SAO11_1051 [Staphylococcus aureus O11] Length = 192 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 20/202 (9%) Query: 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80 NLT + G+ ++ K + IE R + I K+ A + ++ + Sbjct: 2 NLTLEQVGDLVGVGKSTVRKWETGDIENMKR----DKIVKLAKALRVSPSFIMGIDDEQS 57 Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140 + K+IP++ +G + N + + ++ Sbjct: 58 QLETLPVKKIPVVSKISAGLPIYC------EENLVDYIYFSTKNLNP------DKEEFGL 105 Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL-- 198 + SM L+ +GD++++ V G ++ + K + G I L+ Sbjct: 106 QVSGDSMNKLFDEGDVVVVEKDSIVENGQLGVVMINGYNGTVKRI-RYNGDQIILIPESN 164 Query: 199 NCCYPVDTVEMSD-IEWIARIL 219 N + D I+ + R++ Sbjct: 165 NPNHYPQVYGKDDEIKIVGRVV 186 >gi|227514727|ref|ZP_03944776.1| repressor LexA family protein [Lactobacillus fermentum ATCC 14931] gi|227086931|gb|EEI22243.1| repressor LexA family protein [Lactobacillus fermentum ATCC 14931] Length = 199 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 40/220 (18%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGRNRWPSTESIFK 60 + I + + H P+ + GL TS N+ K+ ++ P I Sbjct: 3 VLSFIHKQVDAHGYPPTVREICGAVGLSSTSTVHGHINRLIKKGYLKKDPSKPRALEI-- 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + P P + + + + Sbjct: 61 -------------------TPAGLEVLGITPKQTQIPLLGVVAAGEPILAVQDATDFFPI 101 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P H+ Q TSM+ + GD +I+ N GD ++ + Sbjct: 102 PPSIPDHD-------DLFMLTIQGTSMINIGILNGDKVIVRRQETANNGDIVIAMTSDNE 154 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N + D+ + +++ Sbjct: 155 ATCKRFFK-EQGHIRLQPENDTLAPIIL--DDVTILGKVV 191 >gi|300935462|ref|ZP_07150457.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] gi|300459344|gb|EFK22837.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] Length = 215 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 58/211 (27%), Gaps = 18/211 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ ++ LA + G+ + R P+ E I +I+ + Sbjct: 10 KQLMRAQGMSQDSLADRMGITKGGLSHWLNG-----RREPNLEDIARIMRELGRRQFTVT 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + + +P P N + Sbjct: 65 HDGMVIDDSVSNTLQAVP----PRDLGSYPVIDWKDTVNNMDD--ARRSALRHVTTSVIC 118 Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISR 188 + SM G +++++ G ++ + G I K LI Sbjct: 119 SDDSYWLVAKGESMNAPQGLSIPAGTMILVDPHAPAIDGKLVIAQLEEGQIPTFKQLIID 178 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ + L SLN YP + + I ++ Sbjct: 179 GGQRL-LRSLNPLYPPIPMNPES-KIIGVVV 207 >gi|114566539|ref|YP_753693.1| repressor lexA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318397|sp|Q0AY82|LEXA_SYNWW RecName: Full=LexA repressor gi|114337474|gb|ABI68322.1| Repressor lexA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 204 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 59/218 (27%), Gaps = 36/218 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 K+I + I + + PS + + GL +S R +G R + I Sbjct: 11 QKQILDFIKQSCKEKGYPPSVREIGQAVGLKSSSTVHTHLVRLEEKGLIRRDPAKPRAII 70 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + P S + N N + +P Sbjct: 71 --------------------PLDDEPLLQSEALSVPVIGNVAAGSPILAEQNIDNYLSIP 110 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + K + SM GD LI+ + G+ ++ + Sbjct: 111 VD-------FLGSGNHFILKVKGDSMIEAGILDGDYLIVREQADASNGEIVVALLD-NEA 162 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K R ++L N TV ++ ++ Sbjct: 163 TVKRFYRR-DDYVELRPENALMDPITVNN--VQVAGKV 197 >gi|318059582|ref|ZP_07978305.1| LexA repressor [Streptomyces sp. SA3_actG] Length = 167 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 33/160 (20%), Gaps = 12/160 (7%) Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L P + P + + + + Sbjct: 13 FLRRDPHRPRAYEVRGSDQPSPQPADTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPL 72 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + K SM GD + + GD + G+ Sbjct: 73 PRQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GE 124 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N Y + + +++ Sbjct: 125 ATVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 161 >gi|152990029|ref|YP_001355751.1| phage repressor protein [Nitratiruptor sp. SB155-2] gi|151421890|dbj|BAF69394.1| phage repressor protein [Nitratiruptor sp. SB155-2] Length = 219 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 75/221 (33%), Gaps = 13/221 (5%) Query: 3 SFSHKKIWEAIDRMAER----HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 +++ E I + + + +A G+ P + K+ R + P E + Sbjct: 1 MLKVEEVIERIKDVLSKEIDGKKVYDKDVAAALGITPEHLSILKK-----RKKLPLPEIL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L D + +K + + +GG + + + Sbjct: 56 DFCAKRKISINWLLYDQDPESLQENTQKFAYVHYFKEVGASAGGGALNYELVSQKLYIDE 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + ++ + I+ SM P + G IL ++ + + + Sbjct: 116 EIVQMLGGRGALKHIE----AIHLLGDSMEPTLKDGSILFVDRSELDVKKGGIFLLSTLM 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + R ++++S N YPV+ V+ +++ + +++ Sbjct: 172 GLFVKRVRLRLDGKLEMISDNPSYPVEVVQGDEVQVVGKVV 212 >gi|49079716|gb|AAT49923.1| PA3007 [synthetic construct] Length = 205 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 32/220 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E H P + +A++ G + E Sbjct: 1 MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSP---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK----------GAIEMTPGASRGIRIPGFEPHAANDDEGLPVIGRVAAGAPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + + SM + GD+L ++ + G ++ + Sbjct: 96 AEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARI 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 ++ K G + L++ N + V++ + E I Sbjct: 156 -GEEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKEQELI 193 >gi|42519380|ref|NP_965310.1| LexA repressor [Lactobacillus johnsonii NCC 533] gi|47605798|sp|P61610|LEXA_LACJO RecName: Full=LexA repressor gi|41583668|gb|AAS09276.1| LexA repressor [Lactobacillus johnsonii NCC 533] Length = 207 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I I E P+ + L TS +E + + + + Sbjct: 8 KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + +E P + + +P Sbjct: 68 EVTEKG-----------------REALGIKPKDIPVVGVVTAGQPILAVQDIDEYFPLPP 110 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD +I+ N G+ ++ + Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDHVIVRKQSSANNGEIVVAMTEDNEAT 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + ++ + +++ Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199 >gi|294784043|ref|ZP_06749365.1| LexA repressor [Fusobacterium sp. 1_1_41FAA] gi|294479855|gb|EFG27634.1| LexA repressor [Fusobacterium sp. 1_1_41FAA] Length = 219 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 13/215 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ +H + GLA+K L T +K ++ S I +++ + Sbjct: 4 GTTLKKIRLKHKDSLRGLAKKINLHFTFIDKVEKGTAP-----ISNNFIERVIEVYPDEE 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP-HN 128 L + + E + S G G + + P+ P Sbjct: 59 KTLKKEYLKENLPKVFNKDESIKI-LEDSEVLNLPVYGKASAGRGYLNMDKPDYYMPITK 117 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-S 187 G +++ + SM P G+ +++ +++ + + K + Sbjct: 118 GDFSL--NSFFVEITGDSMEPTLEDGEYALVDPNNTAYVKNKIYVVTYNDEGYIKRVELK 175 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + + I L S N Y + + R++ Sbjct: 176 EKKKVITLKSDNPDYDDIDIPEEMQEYFKINGRVV 210 >gi|255525232|ref|ZP_05392174.1| SOS-response transcriptional repressor, LexA [Clostridium carboxidivorans P7] gi|296188721|ref|ZP_06857109.1| repressor LexA [Clostridium carboxidivorans P7] gi|255511095|gb|EET87393.1| SOS-response transcriptional repressor, LexA [Clostridium carboxidivorans P7] gi|296046985|gb|EFG86431.1| repressor LexA [Clostridium carboxidivorans P7] Length = 202 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 52/218 (23%), Gaps = 32/218 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I+E I + PS + GL TS ++ L Sbjct: 8 KQMEIYEFIKEQIKEKGYPPSVREICAAVGLSSTS-------------------TVHGHL 48 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + D + + P + N +T +P Sbjct: 49 ERLEKKGLIKRDATKPRTIEVIENSLNRKEMINVPIIGTITAGMPILAVENIEDTFPLPV 108 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 N + K SM+ GD I+ GD + + Sbjct: 109 DYVKSN------KELFMLKVSGESMIDAGILNGDFCIIEKTNSAENGDIIAALID-NEAT 161 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V + + +++ Sbjct: 162 LKRFFKEKD-HIRLQPENKTMNPIIVPNCQV--LGKLV 196 >gi|300361920|ref|ZP_07058097.1| repressor lexA [Lactobacillus gasseri JV-V03] gi|300354539|gb|EFJ70410.1| repressor lexA [Lactobacillus gasseri JV-V03] Length = 207 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I I E P+ + L TS +E + + + + Sbjct: 8 KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + +E P + + +P Sbjct: 68 EVTEKG-----------------REALGIKPKDIPIVGVVTAGQPILAVQDIDEYFPLPP 110 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD +I+ N G+ ++ + Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILDGDHVIVRKQSSANNGEIVVAMTEDNEAT 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + ++ + +++ Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199 >gi|326565577|gb|EGE15741.1| peptidase S24 S26A and S26B [Moraxella catarrhalis 103P14B1] Length = 224 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 66/230 (28%), Gaps = 22/230 (9%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +H + + ++ P+ +A+ G++P + N + GI +SI K+ Sbjct: 1 MTHPTMLRVLKATGKK----PAEIAKDLGIEPQNINNWSKRGISKE----GIKSISKLYN 52 Query: 64 A-TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + D + + + F GN + Sbjct: 53 IGIDWILNGEDYQQSVDDILQNTSQPFVSTEIDTKTKLWLPLMDISFSCGNGVG-IEYHF 111 Query: 123 IRSPHNGIYAIQ---------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + + + SM GDI ++ + ++ Sbjct: 112 EETKKRLAFEPDFLSNRGVKASNTRLLYARGDSMEEFIFDGDIFAIDISDTNVRDGQIYA 171 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 G+ + K + ++ L S N Y V D + + R W Sbjct: 172 VYFEGEAMLKQIFKEAAGTLILHSKNPKYRDKIVTEDNGADFKVLGRQFW 221 >gi|282850930|ref|ZP_06260304.1| peptidase S24-like protein [Lactobacillus gasseri 224-1] gi|282557882|gb|EFB63470.1| peptidase S24-like protein [Lactobacillus gasseri 224-1] Length = 226 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 64/220 (29%), Gaps = 23/220 (10%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K I + H +T S LARKAG+ T+ + R P+ ++ K+ A Sbjct: 14 RKLISANLKEYM--HGMTQSELARKAGIPLTTLSGYLREKST-----PNAGNLEKLALAL 66 Query: 66 NETICQLLDLPFSDGRTTEKKEKEI----PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 N + + + I P + N Sbjct: 67 NVKKSDIDPRYSFELDSEPTPSNSIDTSGMHYVRVPIIGTIACGEPILAEQNIEGYTHEL 126 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDI 180 P + + Q SM PL G +++++ V + + Sbjct: 127 FEEEPKKD------ELFALRCQGDSMEPLIPDGALVLIHKQPTVEDDEIAAVQVDDDTRA 180 Query: 181 VAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARIL 219 K + G+ + L +N Y + + RIL Sbjct: 181 TLKKV-KHVGKDVFLYPINTTKYDPIILNEDN---PGRIL 216 >gi|254498006|ref|ZP_05110769.1| phage repressor [Legionella drancourtii LLAP12] gi|254352783|gb|EET11555.1| phage repressor [Legionella drancourtii LLAP12] Length = 227 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 12/220 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +KI + I LT LA L + N +R + + K+L + Sbjct: 5 EKIGQRIKHERTIKGLTRKALAELTDSLKISRINNYERGERTPGPEE--IKQLAKVLEVS 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + L D + IPLL + + + +P S Sbjct: 63 PAFLMCLSDDKQGKLKKPLGLGALIPLLNYKQACDPAVCIQEIKNEQYSEIFTLIPISPS 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKV 184 I + +D SM+P +RK D+LI++ N GD ++ K +++ + Sbjct: 123 LTAR---IGENAFALEVKDDSMIPEFRKTDVLIIDPETMPNPGDFVIAKLDGDNEVILRK 179 Query: 185 LISRRGRS----IDLMSLNCCYPVDTVEMS-DIEWIARIL 219 +L++LN + V + + ++ Sbjct: 180 YKQLSASRTTPEFELIALNENWASLQVNGDTKDKIVGTVI 219 >gi|206601813|gb|EDZ38296.1| putative phage repressor [Leptospirillum sp. Group II '5-way CG'] Length = 224 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 61/212 (28%), Gaps = 7/212 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ + LA K + ++ SI K L + Sbjct: 9 KNLTLLIKKWG-GATRLAEKLDRSLSQISQLTGTSPRPNIGHRLARSIEKKLELPEGWMD 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 Q + + + + + + + S G + V V + + Sbjct: 68 QDHSEYPAVQEESAEHGTQTTIPVYAITASMGRGR--FVESEAIIKIVVVNQSTLGEMRL 125 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 SM P I+ ++ + D + + I K + Sbjct: 126 TGTGHGIVAVYADGESMEPTIPPKSIVFVDRNQRDLR-DGVYLVRLEDMIYVKRIQRLPD 184 Query: 191 RSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219 + ++S N Y V++ D E + +++ Sbjct: 185 HKLKVISDNPIYKPFDVDLKNGDDFEILGKVI 216 >gi|297566157|ref|YP_003685129.1| putative phage repressor [Meiothermus silvanus DSM 9946] gi|296850606|gb|ADH63621.1| putative phage repressor [Meiothermus silvanus DSM 9946] Length = 235 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 17/225 (7%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPST 55 M + K+ AI + + + G L + + + + Sbjct: 11 MPKVTKKEKPAWGRAIAARRAMLGKSLVDIENETGGELYQALIYRLENGKKD--PSTLTV 68 Query: 56 ESIFKILAATNETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +L A + + E P G+ G Sbjct: 69 RQFSLLLKALGWRASDWQEQTGLEPLLDLESPTSLQPGERVSKVRFFIELVRGLASAGRP 128 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLI 173 + G+P + + ++ + SM P GD + ++ + + G ++ Sbjct: 129 VDADGMPVLAD------VWRRGSLLYQVEGDSMAPTLNDGDRVYVDPSDLDLREGRVYVL 182 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + + L+S N Y S++ I R+ Sbjct: 183 EIPGDGHTIKRVRRLDDGELWLVSDNPKYRPW--RPSEMRVIGRV 225 >gi|86357549|ref|YP_469441.1| LexA repressor [Rhizobium etli CFN 42] gi|86281651|gb|ABC90714.1| transcriptional regulator repressor LexA protein [Rhizobium etli CFN 42] Length = 223 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 15/217 (6%) Query: 17 AERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + PS LA K+G+ +R I + K+ A N + Sbjct: 1 MKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYNPS 60 Query: 69 ICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + S P S G G + + Sbjct: 61 LQPRRGFSPSVIEGSLGKPQPVAAPAAPKPVADNGNSISVPVMGRIAAGVPISAIQNNTH 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM+ GD +I+ + + GD ++ + Sbjct: 121 DIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALVDDEEATL 180 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + SI L + N Y ++ +++ Sbjct: 181 KRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 216 >gi|227890245|ref|ZP_04008050.1| LexA repressor [Lactobacillus johnsonii ATCC 33200] gi|227849059|gb|EEJ59145.1| LexA repressor [Lactobacillus johnsonii ATCC 33200] Length = 207 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I I E P+ + L TS +E + + + + Sbjct: 8 KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + +E P + N +P Sbjct: 68 EVTEKG-----------------REALGIKPKDIPVVGVVTAGQPILAVQNIDEYFPLPP 110 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD +I+ N G+ ++ + Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDHVIVRKQSSANNGEIVVAMTEDNEAT 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + ++ + +++ Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199 >gi|49475607|ref|YP_033648.1| LexA repressor [Bartonella henselae str. Houston-1] gi|71648698|sp|Q6G5D9|LEXA_BARHE RecName: Full=LexA repressor gi|49238414|emb|CAF27641.1| SOS response regulator lexA protein [Bartonella henselae str. Houston-1] Length = 234 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 59/229 (25%), Gaps = 11/229 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + ++ I + + PS K L+ TS + R R Sbjct: 1 MLTCKQYELLLFIHNHMKETGVPPSFDEMKTALELTSKSGIHRLITALEERGFIRRLPNR 60 Query: 54 --STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + E I T P K K + G Sbjct: 61 ARAVEVIRLPEKITFNLSSARKISPSVIENNKRKISKNSDNFDLEEKKNIIIPIMGRIAA 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + + + + +D SM DI+I+ G+ Sbjct: 121 AVPISAIQQQINTLCLPQDMISLGEHYALEVKDDSMIEAGILDKDIIIVRRQNTATSGEI 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ ++ K + G SI L + N Y ++ +++ Sbjct: 181 IIALIDKEEVTFKRYRRK-GNSITLEAANPHYETRIYRPERVQIQGKLI 228 >gi|209520380|ref|ZP_03269143.1| transcriptional repressor, LexA family [Burkholderia sp. H160] gi|295676407|ref|YP_003604931.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1002] gi|209499165|gb|EDZ99257.1| transcriptional repressor, LexA family [Burkholderia sp. H160] gi|295436250|gb|ADG15420.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1002] Length = 216 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 61/213 (28%), Gaps = 23/213 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G + S E Sbjct: 1 MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSAN----------------SAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA + ++ L G G+ Sbjct: 45 EHLRALARKGVIELAAGASRGIRLLSGQEDAPHQFTLPHAGLMQLSLPLIGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 105 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRSEAKDGQIIIAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 D+ K L R I+L++ N Y VE Sbjct: 164 LGDDVTVKRLKRRPNG-IELIAENPDYDNIFVE 195 >gi|312872372|ref|ZP_07732442.1| peptidase S24-like protein [Lactobacillus iners LEAF 2062A-h1] gi|311092195|gb|EFQ50569.1| peptidase S24-like protein [Lactobacillus iners LEAF 2062A-h1] Length = 239 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 55/227 (24%), Gaps = 27/227 (11%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++ + H L + T+ N + P+ ++ K+ N L Sbjct: 19 LNHLMSVHGTKQVDLVNALDIPKTTINGYVKGTS-----LPNMGNLQKLADYFNTLKSDL 73 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSG-------------------SGGFFDSGVFPTGN 113 D L + G G Sbjct: 74 DLRFKKDADEQIDISPVYNQLTDIRKHKVYSYAKQQLDEQNSNLNEHRSIYLVGSSAAGL 133 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + + I A D + SM P I+ + + G+ + Sbjct: 134 PLDYGDLDAELIDLSNIPA--KADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIGIF 191 Query: 174 KPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K + I L S+N Y + + +++ Sbjct: 192 EINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFNGEQVRILGKVV 238 >gi|296133008|ref|YP_003640255.1| transcriptional repressor, LexA family [Thermincola sp. JR] gi|296031586|gb|ADG82354.1| transcriptional repressor, LexA family [Thermincola potens JR] Length = 204 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 37/217 (17%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFKILA 63 I E I R + PS + + GL +S +E + R P+ +IL Sbjct: 12 ILEFIKREIRKKGYPPSVREIGKAVGLSSSSTVHGHLAQLEEKGYIRRDPTKPRTIEILD 71 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + P + N +T +P Sbjct: 72 P--------------------DSPVIKKEMVNVPIVGKVTAGEPILAVENIEDTFPLPLD 111 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + SM GD +++ GD ++ + Sbjct: 112 -------FVKNDNVFMLSVRGDSMVEAGILDGDYILVRQQSNAKNGDIVVAL-LGDEATV 163 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N ++ + I +++ Sbjct: 164 KTFYKEKD-YIRLQPENPRLEPII--TNEAQIIGKVI 197 >gi|261418071|ref|YP_003251753.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319767970|ref|YP_004133471.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374528|gb|ACX77271.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|317112836|gb|ADU95328.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC52] Length = 225 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 74/234 (31%), Gaps = 30/234 (12%) Query: 4 FSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFN-KSKRFGIEGRNRWPSTESIFKI 61 + ++I E + ++ + A G+ PT+ N R + S +++ K+ Sbjct: 1 MTKEEIVE---HLMKKAGYSSRRQFAEAIGIPPTTLNSMLTRGLGKA-----SIDNVLKV 52 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP----PSGSGGFFDSGVFPTGNKWNT 117 T+ +L + + + + + + S + G + T + Sbjct: 53 CKGLGITVEELEMMEANGWSEPRRDQNKPHSIKLELPLYGSIAAGALSTVDPVTKDNVEY 112 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--QVNCGDRLLIKP 175 + +P+ G Y+ K SM + G ++ ++ D ++ Sbjct: 113 IALPKHML---GKYSDSKDLFALKVNGESMNKIIPNGSYVVCKPIEIGELKEDDIVIFSH 169 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC-----YPVDTVEMS---DIEWIARILWA 221 + K + + S Y V D++ A+++W Sbjct: 170 D-NEYSMKRFRKDEDNRLLIFS--PESTFKKYHDIVVPYDTVNDLKIYAKVIWY 220 >gi|153853138|ref|ZP_01994547.1| hypothetical protein DORLON_00532 [Dorea longicatena DSM 13814] gi|149753924|gb|EDM63855.1| hypothetical protein DORLON_00532 [Dorea longicatena DSM 13814] Length = 205 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59 ++I E I PS + L TS + + G R P+ Sbjct: 9 KQEEILEYIKSQILERGFPPSVRDICEAVHLKSTSSVHSHLETLEKNGYIHRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + + P + N N Sbjct: 69 EILDDSFNFNRREMVN--------------------VPVIGHVAAGEPLLAEQNIENYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P Y Q K SM+ GD++++ + + GD ++ Sbjct: 109 IPME-------YMPNKQTFMLKVHGESMINAGILDGDLVLVEQSSVADNGDIVVALLD-D 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V D++ + +++ Sbjct: 161 SATVKRFYKEE-GIFRLQPENDALEPIIVR--DLQIMGKVI 198 >gi|322835225|ref|YP_004215251.1| phage repressor [Rahnella sp. Y9602] gi|321170426|gb|ADW76124.1| putative phage repressor [Rahnella sp. Y9602] Length = 236 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 57/223 (25%), Gaps = 16/223 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + T LA G+ S K G + + ++ + + Sbjct: 5 ERLKLAMDEGGFTQGSLAEAVGMAQPSIWKLVSGGAKASKKTIQIANVLGV-RPEWLSDG 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----------WNTVGV 120 + +E Y G G T+ Sbjct: 64 DGPMRIGDAPHSAPLLVREKSEQYRIEDGFRIELLDVAVSAGPGTVNTNEFIEVVRTITY 123 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + Q + SM GD++ ++ +IQ GD + Sbjct: 124 TPEEARMMFGNRSEEQIRMINVKGDSMSGTIEPGDLIFVDISIQSFDGDGIYAFLYDDTA 183 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 K L + + L S N Y + + + +++ Sbjct: 184 HVKRLQKMKDYLLVL-SDNTRYQTWDPITRDEMNRVFIYGKVI 225 >gi|223043296|ref|ZP_03613343.1| LexA repressor [Staphylococcus capitis SK14] gi|314933518|ref|ZP_07840883.1| repressor LexA [Staphylococcus caprae C87] gi|222443507|gb|EEE49605.1| LexA repressor [Staphylococcus capitis SK14] gi|313653668|gb|EFS17425.1| repressor LexA [Staphylococcus caprae C87] Length = 206 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 31/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + +I++ I + + PS + GL ++ + Sbjct: 1 MRELTKRQSEIYDYIKHIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + + + +E + P + N Sbjct: 50 ------LEEKGYIRRDPTKPRAIEIVSEQLEEVNVEETIHVPVIGKVTAGVPITAVENIE 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 158 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ + + +++ Sbjct: 159 TEDEEATVKRFYKEKN-RYRLQPENSTMDPIYLDN--VIVVGKVI 200 >gi|161524810|ref|YP_001579822.1| LexA repressor [Burkholderia multivorans ATCC 17616] gi|189350436|ref|YP_001946064.1| LexA repressor [Burkholderia multivorans ATCC 17616] gi|221197878|ref|ZP_03570924.1| LexA repressor [Burkholderia multivorans CGD2M] gi|221204564|ref|ZP_03577581.1| LexA repressor [Burkholderia multivorans CGD2] gi|221212987|ref|ZP_03585963.1| LexA repressor [Burkholderia multivorans CGD1] gi|254252408|ref|ZP_04945726.1| LexA repressor [Burkholderia dolosa AUO158] gi|229621228|sp|A9AIX7|LEXA_BURM1 RecName: Full=LexA repressor gi|124895017|gb|EAY68897.1| LexA repressor [Burkholderia dolosa AUO158] gi|160342239|gb|ABX15325.1| transcriptional repressor, LexA family [Burkholderia multivorans ATCC 17616] gi|189334458|dbj|BAG43528.1| repressor LexA [Burkholderia multivorans ATCC 17616] gi|221167200|gb|EED99670.1| LexA repressor [Burkholderia multivorans CGD1] gi|221175421|gb|EEE07851.1| LexA repressor [Burkholderia multivorans CGD2] gi|221181810|gb|EEE14211.1| LexA repressor [Burkholderia multivorans CGD2M] Length = 215 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I L T L G G+ Sbjct: 54 GVIELAAGASRGIRLLGGDDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHFACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L+ R G I+L++ N Y V+ Sbjct: 163 LGDDVTVKRLMRRPGG-IELIAENPDYENIFVKA 195 >gi|322385351|ref|ZP_08058996.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270610|gb|EFX53525.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 227 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 57/217 (26%), Gaps = 14/217 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + E L+ S LA G+ S+ + + + + +IL Sbjct: 7 LKEKRESQGLSQSQLASSLGISRASYFNWESGKT--KPNQNNLTKLSQILNVDPRYFESE 64 Query: 73 LDLPFSDGRTTEKKEKEIPLL---------YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + + TEK +K S F T + Sbjct: 65 YEIVETYLKLTEKNQKATLHYAKDLLNNQNSKVVEVSERFAYKVYEKLSAGTGTAYFDDG 124 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D SM P Y G + ++ G + G K Sbjct: 125 NYDTVYFNHQFDYDFASWVFGNSMEPTYENGSVALIKQTGFDYDG-AIYAIDWDGQTYIK 183 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + + L+SLN Y + I +I+ Sbjct: 184 KVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 219 >gi|268319243|ref|YP_003292899.1| LexA repressor [Lactobacillus johnsonii FI9785] gi|262397618|emb|CAX66632.1| LexA repressor [Lactobacillus johnsonii FI9785] Length = 207 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I I E P+ + L TS +E + + + + Sbjct: 8 KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + +E P + + +P Sbjct: 68 EVTEKG-----------------REALGIKPKDIPVVGVVTAGQPILAVQDIDEYFPLPP 110 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD +I+ N G+ ++ + Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDYVIVRKQSSANNGEIVVAMTEDNEAT 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + ++ + +++ Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199 >gi|213969311|ref|ZP_03397449.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] gi|301381938|ref|ZP_07230356.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato Max13] gi|302058610|ref|ZP_07250151.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato K40] gi|302130564|ref|ZP_07256554.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925989|gb|EEB59546.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] Length = 243 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW + Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRSGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y G + + Sbjct: 65 GPKHPNESANENTGDDKRMAIQQTRNVLRGDVEIQIYMEVESPHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GLLRVRYLYRLPNGGLRLRSHNDAEYPDEVFSGEDIAREKIRILGWIFWWS 231 >gi|257866152|ref|ZP_05645805.1| transcriptional repressor LexA [Enterococcus casseliflavus EC30] gi|257872482|ref|ZP_05652135.1| transcriptional repressor LexA [Enterococcus casseliflavus EC10] gi|257875786|ref|ZP_05655439.1| transcriptional repressor LexA [Enterococcus casseliflavus EC20] gi|257800086|gb|EEV29138.1| transcriptional repressor LexA [Enterococcus casseliflavus EC30] gi|257806646|gb|EEV35468.1| transcriptional repressor LexA [Enterococcus casseliflavus EC10] gi|257809952|gb|EEV38772.1| transcriptional repressor LexA [Enterococcus casseliflavus EC20] Length = 206 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 58/230 (25%), Gaps = 42/230 (18%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50 M + + I + I P+ + L TS ++ ++ G+ Sbjct: 1 MAKRTENRQIEILKFIHTRVTEKGYPPTVREIGEAVQLSSTSTVHGHLSRLEKKGLI--L 58 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R P+ ++ T EK P + Sbjct: 59 RDPTKPRAIEL--------------------TASGLEKIDVQPASIPMLGVVTAGEPILA 98 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 + + +P + + SM+ GD +I+ GD Sbjct: 99 VEDASDFFPIPPDLANST------GSLFMLTIRGESMINAGILDGDQVIVRKQQSAQNGD 152 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + I L N + D+ + ++ Sbjct: 153 IVIAMTDEDEATCKRFYKEKN-YIRLQPENDYLEPIILP--DVTILGLVV 199 >gi|320546716|ref|ZP_08041027.1| transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320448595|gb|EFW89327.1| transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 228 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 62/222 (27%), Gaps = 20/222 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILA------ 63 E + L + LA++ G+ S+ ++ + + E + ++ Sbjct: 5 EKLKNRRLELGLKQTELAKQLGISKQSYFAWEKGTSQPTKANLLKLEELLQVPHGYFSEL 64 Query: 64 --ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTV 118 AT + + + E++ ++ + G ++ + Sbjct: 65 EIATLYKQLTDQNQEHALTYVRDLLEQQAKVVSIVQEPRFAYKVYERLSAGVGTNIYDDM 124 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + D SM P Y G + ++ G + Sbjct: 125 DYDTVYFDKDLA-----HDFASWIDGDSMEPTYHNGSVALIRETGFDYDG-AVYAVVWNS 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y + + +I+ Sbjct: 179 QTYIKKVYREENG-LRLVSINKDYDDKFAPYDENPRIVGKIV 219 >gi|317164568|gb|ADV08109.1| putative CI protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 171 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 7/133 (5%) Query: 97 PSGSGGFFDSGVFPTGNKW-NTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149 F+ GN + + + + +S SM P Sbjct: 36 DDCEVPFYKDVCLSAGNGFSDEIEDYNGYKLRFSKSTLRRHGINPDDVVCVSADGDSMEP 95 Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 ++ G L +N+A ++ ++ +G + K+L + + S N Y +T + Sbjct: 96 VFPDGATLGINTADKMIKDGKIYAINHSGLLRTKILQKLPDNQVRIKSYNPEYKDETASL 155 Query: 210 SDIEWIARILWAS 222 + I R+ W S Sbjct: 156 DSLTVIGRVFWWS 168 >gi|134295659|ref|YP_001119394.1| LexA repressor [Burkholderia vietnamiensis G4] gi|166224564|sp|A4JE56|LEXA_BURVG RecName: Full=LexA repressor gi|134138816|gb|ABO54559.1| SOS-response transcriptional repressor, LexA [Burkholderia vietnamiensis G4] Length = 215 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I L T L G G+ Sbjct: 54 GVIELAAGASRGIRLLGIDDMPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L+ R G I+L++ N Y V+ Sbjct: 163 LGDDVTVKRLMRRPGG-IELIAENPDYENIFVKA 195 >gi|172057130|ref|YP_001813590.1| LexA family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|229621205|sp|B1YE71|LEXA_EXIS2 RecName: Full=LexA repressor gi|171989651|gb|ACB60573.1| transcriptional repressor, LexA family [Exiguobacterium sibiricum 255-15] Length = 204 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 57/227 (25%), Gaps = 38/227 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53 M S ++I + I + PS + GL +S +E R R P Sbjct: 1 MRKMSKRQQEILDYIVAQVKLKGYPPSVREIGEAVGLASSSTVHGHLDRLEKRGLIRRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + +IL E + + G G Sbjct: 61 TKPRAIEILLDKPEEDHEAIVHIPVI---------------------------GKVTAGF 93 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + E P Y SM+ GD +I+ G+ ++ Sbjct: 94 PITAIENIEEHFPLPAHYVGNENVFMLTIDGESMINAGILDGDRVIVRQQNTAENGEIVV 153 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + L N + + + +++ Sbjct: 154 AMTEDSEATVKRFF-LEDQQVRLQPENDSMDPMYFDN--VSILGKVI 197 >gi|222149262|ref|YP_002550219.1| transcriptional regulator [Agrobacterium vitis S4] gi|221736246|gb|ACM37209.1| transcriptional regulator [Agrobacterium vitis S4] Length = 219 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 10/217 (4%) Query: 11 EAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + AR G+ T+ +R E Sbjct: 3 ARLREFRRAIGDPDREEFARSIGVSKTTLASYERGESEPTASVLFAYREKHGADVLWLVG 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + + + + S G V R Sbjct: 63 GEGEMRGSQLSSAAVAERDFVLMPQYDVCASAGTGRLPVNQMPTSETAFE----RKFLRD 118 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SMLP +LI++++ R+ + ++ K R Sbjct: 119 LGGAPDHCFLMWSTGDSMLPSIPDNALLIVDASQTTVDHGRIYVFSVGNAVLVKRANWRM 178 Query: 190 GRSIDLMSLNCC--YPVDTVEMSDIE---WIARILWA 221 +DL+S N YPV+T + + +E + R+++ Sbjct: 179 DGRLDLISDNTAGKYPVETFDANRVEDLAVVGRVIFV 215 >gi|160916111|ref|ZP_02078318.1| hypothetical protein EUBDOL_02138 [Eubacterium dolichum DSM 3991] gi|158431835|gb|EDP10124.1| hypothetical protein EUBDOL_02138 [Eubacterium dolichum DSM 3991] Length = 194 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 37/218 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I + +NL+ + G+ ++ + + + E + ++ Sbjct: 2 KLSELIAYYRKLNNLSLEAIGDYVGVAKSTVKRWESGESKNIP-EAKLEKLSELFE---- 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T + P+L + +G F + + V Sbjct: 57 -----------IDVPTFLNGQVKPILGYVKAGYDMFASENLL----GYEEV--------- 92 Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 D K Q SM GD++ + + V GD ++ ++ K ++ Sbjct: 93 -TKKEAAQGDYYLKVQGDSMNGSRIHDGDLVYVKTCSDVENGDIAVVIIDQSEVTIKKIL 151 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219 + ++ LM+ N Y + +DI I ++L Sbjct: 152 KQE-HALVLMATNPAYEPRFFDENDIRNKRVQIIGKVL 188 >gi|47605793|sp|P61605|LEXA_AGRTU RecName: Full=LexA repressor gi|33339178|gb|AAQ14270.1|AF251129_1 LexA [Agrobacterium tumefaciens] Length = 239 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 15/233 (6%) Query: 1 MTSFSHKKIWEAIDRMAERH-NLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNR 51 M + +++ I E + + PS LA K+G+ +R I Sbjct: 1 MLTRKQQELLLFIHGTNEGNPGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPN 60 Query: 52 WPSTESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + K+ A+ + + S G Sbjct: 61 RARALEVIKLPEAYAGASQVRRGFSPTVIEGSLGKLASPPPAPKPAPPAEAASVAVPVMG 120 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166 G + + + + + SM GD +I+ + + Sbjct: 121 RIAAGVPISAIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDTVIIRNGSTAS 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ + K + SI L + N Y ++ R++ Sbjct: 181 PGDIVVALIDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGRLV 232 >gi|309806824|ref|ZP_07700813.1| peptidase S24-like protein [Lactobacillus iners LactinV 03V1-b] gi|308166798|gb|EFO68988.1| peptidase S24-like protein [Lactobacillus iners LactinV 03V1-b] Length = 239 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 54/227 (23%), Gaps = 27/227 (11%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++ + H L + T+ N + P+ ++ K+ N L Sbjct: 19 LNHLMSVHGTKQVDLVNALDIPKTTINGYVKGTS-----LPNMGNLQKLADYFNTLKSDL 73 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-------------------PTGN 113 D L + G Sbjct: 74 DLRFKKDADEQIDISPVYNQLTDIRKHKVYSYAQQQLDEQNSNLNEKRSIYLVGSSAAGL 133 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + + I + D + SM P I+ + + G+ + Sbjct: 134 PLDYGDLDAELIDLSNI--PKKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIGIF 191 Query: 174 KPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K + I L S+N Y + + +++ Sbjct: 192 EINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFAGDQVRILGKVV 238 >gi|120611007|ref|YP_970685.1| putative phage repressor [Acidovorax citrulli AAC00-1] gi|120589471|gb|ABM32911.1| putative phage repressor [Acidovorax citrulli AAC00-1] Length = 245 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 72/244 (29%), Gaps = 32/244 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + LT L+ +G++ + + + + R I L T + Sbjct: 3 LGARIRYYRNKAGLTLDQLSELSGVEMGTISALE---VRDSTRSAYARKIASALGLTVDQ 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF---------FDSGVFPTGNKWNTVG 119 + P + G + G+ +N Sbjct: 60 LEDESADHDVGPVKAAPVRAAEPDPPYLELPGDGHEAGELVITQYQDIGGAMGHGFNLTD 119 Query: 120 VPEIRSPHNGI-----------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 P + + + SM P++ GD L++++ I+V Sbjct: 120 NPPGHIRSWRVTPEWLRLNVPNHTGVKNLSIVTGFGPSMKPMFNPGDPLLVDTGIRVIDH 179 Query: 169 DRLLIKPRTGDIVAKVLISR-----RGRSIDLMSLNCCYPVDTVEMSD--IEWIARI--L 219 + + + K++ G + ++S N YP + + E + ++ + Sbjct: 180 EGVYFFRVGDEGFIKIIQRVPQFDGPGIILRVISKNPDYPPYDLSPKNPHFEVLGKVLTV 239 Query: 220 WASQ 223 W S+ Sbjct: 240 WRSE 243 >gi|15598203|ref|NP_251697.1| LexA repressor [Pseudomonas aeruginosa PAO1] gi|107102557|ref|ZP_01366475.1| hypothetical protein PaerPA_01003621 [Pseudomonas aeruginosa PACS2] gi|116051008|ref|YP_790165.1| LexA repressor [Pseudomonas aeruginosa UCBPP-PA14] gi|218890794|ref|YP_002439658.1| LexA repressor [Pseudomonas aeruginosa LESB58] gi|254235981|ref|ZP_04929304.1| repressor protein LexA [Pseudomonas aeruginosa C3719] gi|254241710|ref|ZP_04935032.1| repressor protein LexA [Pseudomonas aeruginosa 2192] gi|296388498|ref|ZP_06877973.1| LexA repressor [Pseudomonas aeruginosa PAb1] gi|313108297|ref|ZP_07794329.1| repressor protein LexA [Pseudomonas aeruginosa 39016] gi|585396|sp|P37452|LEXA_PSEAE RecName: Full=LexA repressor gi|122260139|sp|Q02PH1|LEXA_PSEAB RecName: Full=LexA repressor gi|226736104|sp|B7UYS3|LEXA_PSEA8 RecName: Full=LexA repressor gi|9949109|gb|AAG06395.1|AE004726_1 repressor protein LexA [Pseudomonas aeruginosa PAO1] gi|3980197|emb|CAA44750.1| LexA repressor [Pseudomonas aeruginosa] gi|115586229|gb|ABJ12244.1| repressor protein LexA [Pseudomonas aeruginosa UCBPP-PA14] gi|126167912|gb|EAZ53423.1| repressor protein LexA [Pseudomonas aeruginosa C3719] gi|126195088|gb|EAZ59151.1| repressor protein LexA [Pseudomonas aeruginosa 2192] gi|218771017|emb|CAW26782.1| repressor protein LexA [Pseudomonas aeruginosa LESB58] gi|310880831|gb|EFQ39425.1| repressor protein LexA [Pseudomonas aeruginosa 39016] Length = 204 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 32/220 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E H P + +A++ G + E Sbjct: 1 MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSP---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK----------GAIEMTPGASRGIRIPGFEPHAANDDEGLPVIGRVAAGAPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + + SM + GD+L ++ + G ++ + Sbjct: 96 AEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARI 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 ++ K G + L++ N + V++ + E I Sbjct: 156 -GEEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKEQELI 193 >gi|329118988|ref|ZP_08247682.1| lambda repressor protein cI [Neisseria bacilliformis ATCC BAA-1200] gi|327464861|gb|EGF11152.1| lambda repressor protein cI [Neisseria bacilliformis ATCC BAA-1200] Length = 215 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 7/204 (3%) Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 ER+N + AR G N+ N S I K L + Sbjct: 7 ERYNGNQTEFARAVGKAAAQVNQWMNGHRNIGNGVAS--DIEKALDLPRGWLDDEAAPVL 64 Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 +E + + +G G P + + + Sbjct: 65 YRSDAPVIREGWLSVPRLAATGRMGDGIEADDPDEIVDFVIVL--ETWARRQFGGNLGKL 122 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 + SM GD++ +++ GD + + + K L + ++++S Sbjct: 123 RIINAKGDSMQDTINPGDVVFADTSADRYDGDGIYVILTPSGLRIKRLHALVSGGLNIIS 182 Query: 198 LNCCYPVDTVE---MSDIEWIARI 218 N YPV+T+E + ++ R+ Sbjct: 183 DNKAYPVETLEGAALENLRICGRV 206 >gi|195978131|ref|YP_002123375.1| Phage transcriptional repressor [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974836|gb|ACG62362.1| Phage transcriptional repressor [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 232 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 21/232 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M FS + + +++ L + G++ + + ++ R E + Sbjct: 1 MLMFSGIQ----LKTARLSRHISQEQLGQLLGVNKMTISNWEKEKN--RPNQKHFEELVS 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I E Q L + + ++++ + + Sbjct: 55 IFQLPAEYFYQENRLLLPYSQLSAFNKEKVISYSESLLEQQEKMIALPAKQKTLYPYRVY 114 Query: 121 PEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + Y D SM P Y G+++++ G Sbjct: 115 ERLSAGTGYSYFGDGNFDVVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQDSFDYDG 174 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + K + + L+SLN YP D I +I+ Sbjct: 175 -AIYAVEWEEQTYIKKVYREENG-LRLVSLNKKYPDKFASFDDNPRIIGKII 224 >gi|78043201|ref|YP_360517.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995316|gb|ABB14215.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 27/210 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ +LT + LA+ + ++ + + R P +++ K+ N + Sbjct: 4 GQRLRQLRTERDLTQAELAKLLSIGESTISFYESN-----KRQPDFDTLIKLSNFFNVS- 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 T++ K I P + N + +P Sbjct: 58 ------IDFLLGRTDESNKFIQNTKTIPLLGTIRAGIPLLAEENWIEEIALPAGI----- 106 Query: 130 IYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLL--IKPRTGDIVAKVLI 186 D + + SM+ GDI + G + + T K + Sbjct: 107 -----KADFALQVEGESMIYAGIFPGDIAFFKQSETATNGQIVAAGVVEETWKANLKFYV 161 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G++ L S N Y + + I Sbjct: 162 KTNGKAF-LRSANPKYKDIEITP-QHKIIG 189 >gi|323517813|gb|ADX92194.1| hypothetical protein ABTW07_1765 [Acinetobacter baumannii TCDC-AB0715] gi|323518836|gb|ADX93217.1| hypothetical protein ABTW07_2793 [Acinetobacter baumannii TCDC-AB0715] Length = 241 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 71/239 (29%), Gaps = 31/239 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I E I + NL S + K GL + + K+ E++ + Sbjct: 1 MIM---ESIAERIQAALDYANLKWSAASLKLGLSAQAASNWKKG-------KIGKETLKE 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF----------PPSGSGGFFDSGVFP 110 + A T + LLD S + E P S F Sbjct: 51 LAALTGVSAGWLLDGSGSMIELADNPENADAYRPVMAWEAPDDLDPNSFMIIPHVDVKFS 110 Query: 111 TGNKWNTVGVPE--------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 GN P + SM P G ++I++ + Sbjct: 111 AGNGRLVEFEPTTRMTGCAQRMEWFHKKKVSPKNLVEVDVDGDSMEPRIPSGSVVIIDKS 170 Query: 163 I---QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + ++ ++ K L R ++ + S N Y + VE D+E I I Sbjct: 171 VNRLEQVQNRKVYAIRYGDELKIKRLSRRYDGALIIDSDNPSYEREIVEPQDLEHIGII 229 >gi|323126526|gb|ADX23823.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 61/223 (27%), Gaps = 21/223 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + LT +A K G+ +++ +R E PS E + ++ N Sbjct: 5 EKLKERRKELKLTQKDIAEKLGISYQAYSAWERGVKE-----PSAEKVSQLEKLLNVPKG 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPHNG 129 ++ T + ++ + V ++ + + Sbjct: 60 YFTEIEIVRLYNTLSSSGKEKVVTYARDLVQEESQPKVVSISEKRFEYHVYERMSAGIGA 119 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 D SM P Y+ G + ++ G + Sbjct: 120 SVYGDRNYDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCN 178 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y + + + I+ Sbjct: 179 SQTYIKRVYREEDG-LRLVSINPKYKDLFISYDEDPRVVGIIV 220 >gi|313894534|ref|ZP_07828098.1| repressor LexA [Veillonella sp. oral taxon 158 str. F0412] gi|313440930|gb|EFR59358.1| repressor LexA [Veillonella sp. oral taxon 158 str. F0412] Length = 223 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 21/222 (9%) Query: 5 SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I + I D + + T + GL TS +S +E R P+ Sbjct: 11 KQRRILDFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +L +I + S + G G V Sbjct: 71 TVLEDAKPSISVDGNEISSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + + Q SM+ + +GD+LI+ N GD ++ + Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218 + K I L N + V+ IE I + Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219 >gi|189405314|ref|ZP_02814730.2| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|261223695|ref|ZP_05937976.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK2000] gi|261255895|ref|ZP_05948428.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK966] gi|300817229|ref|ZP_07097447.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|331680492|ref|ZP_08381151.1| regulatory protein [Escherichia coli H591] gi|331681931|ref|ZP_08382564.1| regulatory protein [Escherichia coli H299] gi|189370740|gb|EDU89156.1| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|300530205|gb|EFK51267.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|309700480|emb|CBI99774.1| putative cI regulatory protein [Escherichia coli ETEC H10407] gi|331071955|gb|EGI43291.1| regulatory protein [Escherichia coli H591] gi|331081133|gb|EGI52298.1| regulatory protein [Escherichia coli H299] Length = 230 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 72/227 (31%), Gaps = 17/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + N+ + LA G+D + ++ + G+ + + +++ I + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGV 57 Query: 68 TICQ-----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 I E + + +G+ G+ + + E Sbjct: 58 DIADLFTSAHKSNTVYKNSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIE 117 Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R+ + + SM P GD++ ++ +I GD + + Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y + ++L SQ Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222 >gi|317050695|ref|YP_004111811.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945779|gb|ADU65255.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 224 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 28/226 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + LT A G P +++++ + P E + +I N I Sbjct: 4 QRLRELRKMLGLTQGEFAFHVGTSPGYVSEAEQG-----KKVPGGEILRRICEKLNANIN 58 Query: 71 QLLDLPFSDGRTTEK---------------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 LL + S S G + W Sbjct: 59 WLLTGSGDMFLEGHAGSLPSGSAPVRTTEYDFVSVTPYRAWESQSHGACVWQMDAHSILW 118 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 E + Q +M P R GDIL+++ + + + + + Sbjct: 119 LYRPWIECHLRISKEVV-----WSLCMQGDNMDPTLRAGDILLVDGSCKEVAIEGIYLIC 173 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219 G + + G ++ L + N Y +++S +E I R++ Sbjct: 174 CDGMHAVRRVQRM-GSTLTLSNDNSAYRDTDLDVSRKGLEIIGRVV 218 >gi|313884205|ref|ZP_07817971.1| repressor LexA [Eremococcus coleocola ACS-139-V-Col8] gi|312620652|gb|EFR32075.1| repressor LexA [Eremococcus coleocola ACS-139-V-Col8] Length = 205 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54 M S S + I I + E + P+ + + GL TS R G S Sbjct: 1 MKSLSSKQENILICIYQAIESNGYPPTVREICNQVGLASTSTVHGHLTRLEKAGYISRDS 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +++ L + P + + Sbjct: 61 SKTRAIELTDLALQALDIQPQQ-------------------IPLLGKVAAGAPILAVEEA 101 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + +P ++ + + SM+ + GD++ + N GD ++ Sbjct: 102 TDYYPIPPHLQHYDAA-----DLFMLQIKGESMINVGIMDGDLITVRKQSTANNGDIVVA 156 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N + + + +++ Sbjct: 157 MTEDDEATCKTFFKKSD-HYVLRPENDSMDDIILTKA--TILGKVV 199 >gi|73667431|ref|YP_303447.1| transcriptional regulator [Ehrlichia canis str. Jake] gi|72394572|gb|AAZ68849.1| transcriptional regulator [Ehrlichia canis str. Jake] Length = 211 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 71/216 (32%), Gaps = 21/216 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ + LA KA + + G++ P+++ + I N + Sbjct: 10 IVTRMKYQMDKMGINARELAHKADVGKSFVYDIL----SGKSTNPTSKKLMAIAKVLNVS 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ + G ++ V S + Sbjct: 66 LSYLISDDNYTYGQGN--------------MNILPVYDLELENGKISSSGDVNLYLSSNI 111 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS- 187 + + + + SM+P D+++++ ++ L + T + + L Sbjct: 112 NLTSNMKNLRVYYVKGDSMIPTLMNQDVVLVDIGDKIPHPAGLFVIVDTVGVSIRRLEYL 171 Query: 188 RRGRSIDL--MSLNCCYPVDTVEMSDIEWIARILWA 221 R + I L +S N Y + D+E + R++W Sbjct: 172 RENQKIKLHVVSDNKKYSSYECHLEDMEILGRVIWY 207 >gi|309810082|ref|ZP_07703928.1| peptidase S24-like protein [Lactobacillus iners SPIN 2503V10-D] gi|308169581|gb|EFO71628.1| peptidase S24-like protein [Lactobacillus iners SPIN 2503V10-D] Length = 229 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 57/231 (24%), Gaps = 20/231 (8%) Query: 4 FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K+I+ + ++++ + L G + + + R E + Sbjct: 3 LGNKEIFSQNLKYYMYKYDVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60 Query: 63 AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGG----------FFDSGVF 109 + + D ++ + + + G Sbjct: 61 NIKKSDLVEKQTDKQIDILPVYNQLTDIRKHKVYSYAHPQLDEQNSNLNKKRSIYVVGTS 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 G + D + SM P I+ + + G+ Sbjct: 121 AAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGE 177 Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + K + I L S+N Y + + +++ Sbjct: 178 IGIFEINGSAVTCKKYYVDYNSKKIILKSINPKYEPMYFAKDQVRILGKVV 228 >gi|301300956|ref|ZP_07207121.1| repressor LexA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851423|gb|EFK79142.1| repressor LexA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 206 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 38/222 (17%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESI 58 I I P+ + GL TS +K + G+ R P+ Sbjct: 8 QHDILRYIFSHVSDSGYPPTVREICNAVGLSSTSTVHGHLSKLESKGLI--KRDPTKPRA 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +I L + + +IP++ +G + + Sbjct: 66 IEI------------TLAGLEMLDELPNKTQIPIVGTVTAG------EPILAVEENRDYF 107 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + SM+ GD +I+ N G+ ++ Sbjct: 108 PLPP-------YFESADDLFMLSIRGESMINAGILDGDQVIIRKQSSANNGEIVIAMTEE 160 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N + ++ + +++ Sbjct: 161 NEATCKRFFK-EDGYYRLQPENDTMDPIIL--ENVTILGKVV 199 >gi|225870539|ref|YP_002746486.1| phage repressor-like protein [Streptococcus equi subsp. equi 4047] gi|225699943|emb|CAW93888.1| putative phage repressor-like protein [Streptococcus equi subsp. equi 4047] Length = 232 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 21/232 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M FS + + +++ L + G++ + + ++ R E + Sbjct: 1 MLMFSGIQ----LKTARLSRHISQEQLGQLLGVNKMTISNWEKEKN--RPNQKHFEELVS 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I E Q L + + ++++ + + Sbjct: 55 IFQLPAEYFYQENRLLLPYSQLSASNKEKVISYSESLLEQKEKIIALPAKKKTLYPYRVY 114 Query: 121 PEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + Y D SM P Y G+++++ G Sbjct: 115 ERLSAGTGYSYFGDGNFDVVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQDSFDYDG 174 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + K + + L+SLN YP D I +I+ Sbjct: 175 -AIYAVEWEEQTYIKKVYREENG-LRLVSLNKKYPDKFASFDDNPRIIGKII 224 >gi|237738097|ref|ZP_04568578.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229419977|gb|EEO35024.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 227 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 63/217 (29%), Gaps = 16/217 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K+ I + + + ++ K G+ + +++ + G+ + + KI Sbjct: 15 REKLGAYIKARRDELAIGLNQISVKTGVASSLWSRLEN----GKVLKINPFLLKKIGEGL 70 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT--GNKWNTVGVPEI 123 +L + + I L S + + + + +P Sbjct: 71 KIDYKELYKIVGYLDEDKNEIIGNIDLNLEYKKVPLYSSISAGYGACESDVIDYIALPM- 129 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + A + SM I+ + +V ++ + + K Sbjct: 130 ------VNAFSGDVFAVRVNGDSMEHTIENHSIVFIKRDSEVAN-KKIGAFLLNNEALLK 182 Query: 184 VLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + L S N YP V E D + R + Sbjct: 183 RYY-ITDNGVFLRSDNREYPDIRVREHDDFIIVGRYI 218 >gi|150390298|ref|YP_001320347.1| SOS-response transcriptional repressor, LexA [Alkaliphilus metalliredigens QYMF] gi|166990795|sp|A6TR70|LEXA_ALKMQ RecName: Full=LexA repressor gi|149950160|gb|ABR48688.1| SOS-response transcriptional repressor, LexA [Alkaliphilus metalliredigens QYMF] Length = 206 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 60/218 (27%), Gaps = 32/218 (14%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 KI + + PS + + GL TS + ++G R Sbjct: 9 QIKILHYMKSEISQKGYPPSVREICQAVGLKSTSTAHGHLSKLELKGYIRR--------- 59 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 AT ++L K+ +P++ +G N +T +P Sbjct: 60 -DATKPRAIEILSQGDEQSPYIHKEIINVPIVGKVTAGQPI------LAVENIEDTFPLP 112 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + SM+ + D +++ GD ++ Sbjct: 113 ID-------FVDSESTFILTVKGDSMIDDGIHENDYVVVRQQSDARNGDIVVALID-DSA 164 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + I L N V D+ + ++ Sbjct: 165 TVKRFYREKD-HIRLQPSNTSMSPILV--DDVTILGKV 199 >gi|152984099|ref|YP_001347524.1| LexA repressor [Pseudomonas aeruginosa PA7] gi|166224640|sp|A6V389|LEXA_PSEA7 RecName: Full=LexA repressor gi|150959257|gb|ABR81282.1| LexA repressor [Pseudomonas aeruginosa PA7] Length = 204 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 32/220 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E H P + +A++ G + E Sbjct: 1 MQKLTPRQSEILSFIKRCLEDHGFPPTRAEIAQELGFKSP---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK----------GAIEMTPGASRGIRIPGFEPHAANDDEGLPVIGRVAAGAPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + + SM + GD+L ++ + G ++ + Sbjct: 96 AEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVAR- 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 ++ K G + L++ N + V++ + E I Sbjct: 155 LGEEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKEQELI 193 >gi|331002466|ref|ZP_08325984.1| LexA repressor [Lachnospiraceae oral taxon 107 str. F0167] gi|330410282|gb|EGG89716.1| LexA repressor [Lachnospiraceae oral taxon 107 str. F0167] Length = 202 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 63/224 (28%), Gaps = 33/224 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K+I+ I PS + GL TS + +E + Sbjct: 1 MDTLTDKQKEIFNVIKDSILNKGYPPSVREIGELVGLKSTSSVHAHLNSLEKKGYIRKDP 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + T+++ + P + + N + Sbjct: 61 TKPRTIEITDDSFNLTRRE-----------------VVNVPMVGTVAAGMPILASENITD 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 +P P+ K + SM+ + GD +I++ GD ++ Sbjct: 104 YFPIPSELLPNT-------DIFMLKVKGDSMINVGIHDGDQIIVSKQNTAKNGDIIVAL- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V+ ++ + +++ Sbjct: 156 VEDSATVKTFYK-ENNFYRLQPENDFMEPILVK--EVSILGKVI 196 >gi|94988166|ref|YP_596267.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94993958|ref|YP_602056.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] gi|94541674|gb|ABF31723.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94547466|gb|ABF37512.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] Length = 249 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 40/240 (16%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + NLT LA + G ++ +K ++ + E I K + + Sbjct: 11 VKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYE--IEEIAKFFGVEPKKMMFG 68 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF----------------------------- 103 + + + + Sbjct: 69 DNPTSINPQVELIPSTLQKINSTSSQLEHSRQIIVLDTAETLLEQQKEIKNNEDTIAELF 128 Query: 104 ---FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + G V + Y D SM P Y GD + + Sbjct: 129 SYNYYDHAASAGTGQYLNDVQVEKIELPVDY---DADFVIPVYGDSMEPKYHSGDYVFIK 185 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 ++++ GD + GD K L+ + L SLN Y V+ D I ++ Sbjct: 186 LSVELADGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNGKYEDIPVDRDSDFRIIGEVV 243 >gi|332523855|ref|ZP_08400107.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] gi|332315119|gb|EGJ28104.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] Length = 230 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 21/230 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------------RN 50 FS K+ + + ++ ++ L+ + G+ + + ++ R Sbjct: 1 MFSGKQ----LKAIRQKEKMSQENLSDQIGVSKMTISNWEQGKNNPNQKHLAQLVAIFRV 56 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 S IL + + +T K+ ++ + P + Sbjct: 57 SEDYFNSYSTILIPYKQLNSDNQKKVVTFSQTLLAKQSKVIAISTPKKKLYRYRVYESLS 116 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G ++ + D SM P Y G+++++ G Sbjct: 117 AGGGFSY--FGDGNYDEVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQEGFDYDG-A 173 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G K + + L+SLN Y + I +I+ Sbjct: 174 IYAVEWDGQTYIKKVYREENG-LRLVSLNKKYSDKFAPFDENPRIIGKII 222 >gi|116629450|ref|YP_814622.1| LexA repressor [Lactobacillus gasseri ATCC 33323] gi|282850837|ref|ZP_06260211.1| repressor LexA [Lactobacillus gasseri 224-1] gi|311110902|ref|ZP_07712299.1| repressor LexA [Lactobacillus gasseri MV-22] gi|122273612|sp|Q044D8|LEXA_LACGA RecName: Full=LexA repressor gi|116095032|gb|ABJ60184.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|282557789|gb|EFB63377.1| repressor LexA [Lactobacillus gasseri 224-1] gi|311066056|gb|EFQ46396.1| repressor LexA [Lactobacillus gasseri MV-22] gi|329667097|gb|AEB93045.1| LexA repressor [Lactobacillus johnsonii DPC 6026] Length = 207 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I I E P+ + L TS +E + + + + Sbjct: 8 KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + +E P + + +P Sbjct: 68 EVTEKG-----------------REALGIKPKDIPIVGVVTAGQPILAVQDIDEYFPLPP 110 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD +I+ N G+ ++ + Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDHVIVRKQSSANNGEIVVAMTEDNEAT 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + ++ + +++ Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199 >gi|218134334|ref|ZP_03463138.1| hypothetical protein BACPEC_02227 [Bacteroides pectinophilus ATCC 43243] gi|217989719|gb|EEC55730.1| hypothetical protein BACPEC_02227 [Bacteroides pectinophilus ATCC 43243] Length = 231 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 71/233 (30%), Gaps = 24/233 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K + + I + + H L S LA++ + S + + R ++ +I Sbjct: 2 KDLGKTIAKYRKEHKLNQSQLAKELENYDIYVKQNSISAWELGTATPNARQFL--ALCEI 59 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVGV 120 L + + P + R + L Y S G + P Sbjct: 60 LEIYDIYTDFIGQSPLNPFRNLNETGMNKVLEYIRDLESTGNYKPADIIPIHVIQERKVF 119 Query: 121 PEIRSPHNGIYAIQTQD-------------TRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 S G + + SM P Y D++ + ++ Sbjct: 120 YNTVSAGTGSFLDSDEYEMISSPDIPEAATFGVYVDGDSMEPRYHNKDLIWIEQTACLDD 179 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 G+ + G+ K + R + L+SLN Y V E S + R+L Sbjct: 180 GEIGIFYLD-GNAYVKKFQNNRLGTY-LISLNKKYDPIPVTENSSFKIFGRVL 230 >gi|300744007|ref|ZP_07073027.1| repressor LexA [Rothia dentocariosa M567] gi|300380368|gb|EFJ76931.1| repressor LexA [Rothia dentocariosa M567] Length = 222 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 65/220 (29%), Gaps = 23/220 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPSTESIFK 60 +KI +AI E+ PS + GL +S ++ R G R P + Sbjct: 14 QQKILDAIRTEIEQKGYPPSMRQIGDIVGLASLSSVTHQLGRLEKMGYIRRDPKLPRAIE 73 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL +++ +PL+ +G + + + + Sbjct: 74 ILDDIESEGASAHFPELPTFEVSDEDMVPVPLVGRIAAGGPIT------AEQSVEDVLSL 127 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + SM+ GD +++ + GD + + Sbjct: 128 PRQLVGS-------GKLFMLRVKGDSMIDAAICDGDWVVVREQHTADNGDIVAALLD-DE 179 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KV + L+ N Y + +++ Sbjct: 180 ATVKVF-RQVDGHTWLLPRNSQYEPIL--GDRATVMGKVV 216 >gi|116748371|ref|YP_845058.1| SOS-response transcriptional repressor LexA [Syntrophobacter fumaroxidans MPOB] gi|171460792|sp|A0LGS1|LEXA_SYNFM RecName: Full=LexA repressor gi|116697435|gb|ABK16623.1| SOS-response transcriptional repressor, LexA [Syntrophobacter fumaroxidans MPOB] Length = 206 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 30/215 (13%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++++ + +++ +PS + R S ++FK L Sbjct: 7 QERVYGFVRDYIQKNGYSPS---------------YEEIRQNLGFR--SLNAVFKHLKQL 49 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + GV G V +PE Sbjct: 50 EQRGYVQSLWKNKKRALELLPLHTGAV---------SIPFLGVVAAGTPIEAVEIPES-V 99 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + + + SM R+GDILI+ + G ++ G+ K Sbjct: 100 EVPESFLANGNNFALRVKGDSMIEEGIREGDILIVARQSRAENGQTVVAL-VQGEATVKK 158 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +RG I+L N +E + ++ Sbjct: 159 FY-QRGEEIELRPANSRMQPIHARADAVEVVGTVV 192 >gi|309812719|ref|ZP_07706463.1| repressor LexA [Dermacoccus sp. Ellin185] gi|308433414|gb|EFP57302.1| repressor LexA [Dermacoccus sp. Ellin185] Length = 238 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 23/228 (10%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTE 56 T HK + I R + PS + GL S + +E + R P+ Sbjct: 16 TPRQHK-VLTVIRRSVDERGYPPSLREIGEAVGLTSPSSVAHQLAALERKGYLRRDPNRP 74 Query: 57 SIFKILAA-----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++++ T + E P + P + Sbjct: 75 RAMEVVSPDSGAATRGYRGNAVSALSESQHDETGSGDERPTPSYVPVVGRIAAGGPILAE 134 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + +P + + SM+ +GD +++ G+ Sbjct: 135 QAVEDVFPLPRQIVG-------DGELFLLRVVGDSMIDAAICEGDWVVVRRQADAANGEI 187 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + + K L G++ LM N Y + + ++ Sbjct: 188 VAALLDS-EATVKTLRRSEGKT-WLMPANEAYSPI--DGDHASIMGKV 231 >gi|262282768|ref|ZP_06060536.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262262059|gb|EEY80757.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 225 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSALYTYPLLTLPHKKEVDQFASRLLERQRKVSSLTSYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P+Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPMYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPTIVGIVV 217 >gi|145295835|ref|YP_001138656.1| LexA repressor [Corynebacterium glutamicum R] gi|172044440|sp|A4QET8|LEXA_CORGB RecName: Full=LexA repressor gi|140845755|dbj|BAF54754.1| hypothetical protein [Corynebacterium glutamicum R] Length = 253 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 20/223 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57 ++I E I PS + AGL TS + +E + P Sbjct: 36 QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 95 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + + + + F P S + N Sbjct: 96 VRHLPETESRSSKAATQAKSKAPQAGAHDPELAGQTSFVPVVGKIAAGSPITAEQNIEEY 155 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P + SM GD +++ S G+ + Sbjct: 156 YPLPAEIVG-------DGDLFMLQVVGESMRDAGILTGDWVVVRSQPVAEQGEFVAAMID 208 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K I L+ N + + E + +++ Sbjct: 209 -GEATVKEFHKDSSG-IWLLPHNDTFAPI--PAENAEIMGKVV 247 >gi|330876959|gb|EGH11108.1| repressor protein c2 [Pseudomonas syringae pv. glycinea str. race 4] Length = 362 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI + +A + G+ ++ + + E+++ + Sbjct: 142 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 193 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121 AT L E L P+ S + G+ V P Sbjct: 194 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 250 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 251 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 310 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 311 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 350 >gi|19553134|ref|NP_601136.1| LexA repressor [Corynebacterium glutamicum ATCC 13032] gi|62390770|ref|YP_226172.1| LexA repressor [Corynebacterium glutamicum ATCC 13032] gi|41326108|emb|CAF20271.1| PUTATIVE LEXA REPRESSOR TRANSCRIPTION REGULATOR PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 253 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 20/223 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57 ++I E I PS + AGL TS + +E + P Sbjct: 36 QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 95 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + + + + F P S + N Sbjct: 96 VRHLPETESRSSKAATQAKSKAPQAGVHDPELAGQTSFVPVVGKIAAGSPITAEQNIEEY 155 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P + SM GD +++ S G+ + Sbjct: 156 YPLPAEIVG-------DGDLFMLQVVGESMRDAGILTGDWVVVRSQPVAEQGEFVAAMID 208 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K I L+ N + + E + +++ Sbjct: 209 -GEATVKEFHKDSSG-IWLLPHNDTFAPI--PAENAEIMGKVV 247 >gi|325277308|ref|ZP_08142935.1| LexA repressor [Pseudomonas sp. TJI-51] gi|324097574|gb|EGB95793.1| LexA repressor [Pseudomonas sp. TJI-51] Length = 202 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 60/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA + + G G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPG-----------FEAKADESGLPIIGRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AEQHIEQSCNINPAFFHPQADYLLRVHGMSMKDVGILDGDLLAVHTCREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ + Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKE 187 >gi|284799995|ref|ZP_05985430.2| putative repressor protein [Neisseria subflava NJ9703] gi|284796327|gb|EFC51674.1| putative repressor protein [Neisseria subflava NJ9703] Length = 239 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 66/224 (29%), Gaps = 33/224 (14%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 P+ +AR G+ P FN+ P+TE++ KI +T + LL Sbjct: 18 PAVIARDIGMSPPGFNRIWYNDG-----LPNTETLIKIQESTGCDLNWLLTGKGLPYLDK 72 Query: 84 EKKEKEIPLLYF-------------PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP---- 126 + E F + E Sbjct: 73 ARPENAGAFSVSRNSDGITDTMGNPVDLSEFVFVPRYNVAAAAGYGAPVFGEEPLFCLAF 132 Query: 127 -----HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 N + + + + SM + GD +++N A + D L + D+ Sbjct: 133 RKYWIDNYVTKQPEKLSVITVKGDSMEGVLNHGDSILINHAET-DPRDGLYVLRIGNDLF 191 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILWA 221 K + + + S N Y +++ DI I R+ W Sbjct: 192 VKRVQRIP-GKLLVTSENPRYAPFEIDLSNAQDDIAIIGRVEWY 234 >gi|28867949|ref|NP_790568.1| transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851185|gb|AAO54263.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|331018885|gb|EGH98941.1| transcriptional regulator, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 243 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW + Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRSGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y G + + Sbjct: 65 GPKHPNESANENTGDDKRMAIQQTRNVLRGDVEIQIYMEVESPHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSGEDIAREKIRILGWIFWWS 231 >gi|300861339|ref|ZP_07107426.1| repressor LexA [Enterococcus faecalis TUSoD Ef11] gi|300850378|gb|EFK78128.1| repressor LexA [Enterococcus faecalis TUSoD Ef11] Length = 206 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 56/225 (24%), Gaps = 32/225 (14%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M + + + + I E P+ + + L TS +E + Sbjct: 1 MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + + T E + EK P + Sbjct: 61 PTKPRAIELTPEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEAS 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + +P + SM+ GD +I+ N GD ++ Sbjct: 104 DFFPLPPDLRTEENAL------FMLMIRGESMINAGILDGDQVIVRKQSNANNGDIVIAM 157 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ + + +++ Sbjct: 158 TDEDEATCKRFFR-EVDHIRLQPENDALAPILLDN--VTILGKVV 199 >gi|169824444|ref|YP_001692055.1| transcriptional repressor [Finegoldia magna ATCC 29328] gi|302380660|ref|ZP_07269125.1| repressor LexA [Finegoldia magna ACS-171-V-Col3] gi|303233784|ref|ZP_07320438.1| repressor LexA [Finegoldia magna BVS033A4] gi|229621216|sp|B0S1C5|LEXA_FINM2 RecName: Full=LexA repressor gi|167831249|dbj|BAG08165.1| transcriptional repressor [Finegoldia magna ATCC 29328] gi|302311603|gb|EFK93619.1| repressor LexA [Finegoldia magna ACS-171-V-Col3] gi|302495218|gb|EFL54970.1| repressor LexA [Finegoldia magna BVS033A4] Length = 208 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 31/220 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 +I + I R + P+ + ++ TS N + ++G R ++ Sbjct: 8 KQIEILKFIKRYIDYKGYPPAIREIGDSLNINSTSTVHNNILKLEMKGYLRRDPLKNRAL 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + + K + + N +T + Sbjct: 68 EIIDSVYEEQENEIKKETIDVPIVGKVQAGMPI---------------LAIENVEDTFPL 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P Y Q K Q SM GD +I+ N GD ++ Sbjct: 113 PIE-------YTSQGIVFILKVQGESMIEDGILNGDKIIVRKQNTANNGDIVVALMD-ES 164 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I+L N V+ D+E + +++ Sbjct: 165 ATVKRFYRHSD-HIELRPSNSTMYPIIVK--DVEILGKVI 201 >gi|328945610|gb|EGG39761.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 225 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSALYTYPLLTSPHKKEVDQFASRLLERQRKVSSLTAYKVLSVELAAGRGNS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|296103057|ref|YP_003613203.1| putative repressor protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057516|gb|ADF62254.1| putative repressor protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 290 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 19/224 (8%) Query: 11 EAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + ++R+ + T + +A K G+ P+ ++ +R +I ++ Sbjct: 60 QNLNRLIGEYIVEGYTKAQIAEKIGIPPSQLSQL---SGSNASRNIGDIIARRIESSMGL 116 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR--- 124 + + K I L F G+ + PEI Sbjct: 117 PHGWMDSKRADVDASGTKPNFFINPLTKNQQQYRIEVMDTEFSCGSGRMNMDYPEIVKSI 176 Query: 125 ------SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + T SML GD+++++ + GD + Sbjct: 177 ELDPEEAKRMFGGRSPTSLKICTVVGDSMLGTIFPGDLVVIDVTVNRLIGDGIYAFVYGD 236 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 + K L + + ++S N Y V + S+ ++ Sbjct: 237 NFHIKRLQLLKD-KLVVISDNSTYEKWFVSETDQSEFHIQGLVV 279 >gi|153212385|ref|ZP_01948167.1| repressor protein C2 [Vibrio cholerae 1587] gi|124116593|gb|EAY35413.1| repressor protein C2 [Vibrio cholerae 1587] Length = 219 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 59/213 (27%), Gaps = 13/213 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + +T + LA + ++ G NR PS E I ++ L Sbjct: 7 VKARMKDNGITQAVLAERLDKSQSAIAHWL-----GGNRKPSIEEIAAMMKIVGLDHVTL 61 Query: 73 LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + EI + Sbjct: 62 NSDGLVEYPDEAWANISRPQIQPSYQKSFPVLSSVQAGMWSEAIEPYTAEEINEWYETTE 121 Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186 + + + SM + +G ++++++ G ++ + K L+ Sbjct: 122 RTSERCFWLRVEGDSMTSGVGVSFPEGTLVLVDTERDHQNGSLVVAKLTDVNEATFKKLV 181 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ L LN Y V + + I ++ Sbjct: 182 IDAGQKY-LKPLNPSYNAIAVNGN-CKIIGVVI 212 >gi|325688189|gb|EGD30208.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] gi|327469056|gb|EGF14528.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 225 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSTLYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|153803760|ref|ZP_01958346.1| repressor protein C2 [Vibrio cholerae MZO-3] gi|124120705|gb|EAY39448.1| repressor protein C2 [Vibrio cholerae MZO-3] Length = 221 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 59/213 (27%), Gaps = 13/213 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + +T + LA + ++ G NR PS E I ++ L Sbjct: 9 VKARMKDNGITQAVLAERLDKSQSAIAHWL-----GGNRKPSIEEIAAMMKIVGLDHVTL 63 Query: 73 LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + EI + Sbjct: 64 NSDGLVEYPDEAWANISRPQIQPSYQKSFPVLSSVQAGMWSEAIEPYTAEEINEWYETTE 123 Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186 + + + SM + +G ++++++ G ++ + K L+ Sbjct: 124 RTSERCFWLRVEGDSMTSGVGVSFPEGTLVLVDTERDHQNGSLVVAKLTDVNEATFKKLV 183 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ L LN Y V + + I ++ Sbjct: 184 IDAGQKY-LKPLNPSYNAIAVNGN-CKIIGVVI 214 >gi|118443690|ref|YP_878184.1| LexA repressor [Clostridium novyi NT] gi|171472987|sp|A0Q0N2|LEXA_CLONN RecName: Full=LexA repressor gi|118134146|gb|ABK61190.1| LexA repressor [Clostridium novyi NT] Length = 204 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 42/222 (18%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR-WPSTE 56 +I+E I PS + + GL TS +K ++ G+ R+ P T Sbjct: 8 KQIEIYEFIKEQIIEKGYPPSVREICKGVGLSSTSSVHGHLSKLEKKGLIRRDSTKPRTI 67 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I K + + P + + N + Sbjct: 68 EILK-------------------------EPIVPKEMVNIPILGKVTAGTPILAVENIED 102 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 T + P N K SM+ GD+ I+ G+ ++ Sbjct: 103 TFPISLNFIPSN------KDLFMLKISGESMIDAGILDGDLAIIEKTNTAKNGEIVVALI 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++ K + I L N +E + + + Sbjct: 157 D-NEVTLKRFFK-EDKHIRLQPENKNMDPIILEDDSVSIVGK 196 >gi|186476388|ref|YP_001857858.1| LexA repressor [Burkholderia phymatum STM815] gi|229621203|sp|B2JK89|LEXA_BURP8 RecName: Full=LexA repressor gi|184192847|gb|ACC70812.1| transcriptional repressor, LexA family [Burkholderia phymatum STM815] Length = 216 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 23/214 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G + S E Sbjct: 1 MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSAN----------------SAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA + L G G+ Sbjct: 45 EHLRALARKGVIELAAGASRGIRLIAGQDDLPHQFTLPHASIMQLSLPLVGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 105 AQEHISQTYMCDPSLFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKKSEAKDGQIIVAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L R ++L++ N Y V+ Sbjct: 164 LGDDVTVKRLKRRPDG-LELIAENPDYENIFVQA 196 >gi|218704103|ref|YP_002411622.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|218431200|emb|CAR12076.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|323976890|gb|EGB71978.1| peptidase S24 [Escherichia coli TW10509] Length = 230 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 17/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + N+ + LA G+D + ++ + G+ + + +++ I + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGV 57 Query: 68 TICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 I L E + + +G+ G+ + + E Sbjct: 58 DIADLFTSALKSNTVYKNSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIE 117 Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R+ + + SM P GD++ ++ +I GD + + Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y + ++L SQ Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222 >gi|53802873|ref|YP_115350.1| prophage MuMc02, S24 family peptidase [Methylococcus capsulatus str. Bath] gi|53756634|gb|AAU90925.1| prophage MuMc02, peptidase, family S24 [Methylococcus capsulatus str. Bath] Length = 193 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 18/190 (9%) Query: 48 GRNRWPSTESIFKILAATNETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDS 106 R P E + I P G +K + P +Y P Sbjct: 2 KREYQPPPEVLALIRQKLQGEPQAAHAYPTKPGGLNGDKHLQRQPAVYSPDDYVALPLYD 61 Query: 107 GVFPTGNKW--------NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 G + + + + + SM P KGD+++ Sbjct: 62 VRAAAGGGVVPDTENVVDFLHFKKAWLRTE-LRSSPDDLYLIYVDGESMEPTLCKGDVIL 120 Query: 159 LNSAIQV--NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--- 213 +N + G +++ G ++ K L + G I + S N Y V D++ Sbjct: 121 VNHRDKFQGRDGGIYVLRLD-GALLVKRLQRKMGGIIKVTSDNPVYEPFEVGAQDLDRAD 179 Query: 214 --WIARILWA 221 I R++WA Sbjct: 180 FSIIGRVVWA 189 >gi|329897460|ref|ZP_08272103.1| SOS-response repressor and protease LexA [gamma proteobacterium IMCC3088] gi|328921157|gb|EGG28560.1| SOS-response repressor and protease LexA [gamma proteobacterium IMCC3088] Length = 199 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 39/217 (17%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I + + P + +AR G + + E Sbjct: 1 MIKLTQRQQQVLDFIKGHMQSTGMPPTRADIARSLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA G G G+ Sbjct: 45 DHLKALARKGAIEMIPGASRGIKLPEAT----------------FGLPVIGRVAAGSPIL 88 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K + SM+ + GD L + V G ++ + Sbjct: 89 AEEHIEEHISIPPDFFYPPADYFLKVRGDSMINVGILDGDFLAVKRTSDVRNGQIVVARI 148 Query: 176 RTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSD 211 ++ K L G + L++ N Y V++ D Sbjct: 149 -EDEVTVKRLDKPAGGHTVRLIAENPAYEPIVVDLRD 184 >gi|323352770|ref|ZP_08087740.1| transcriptional repressor [Streptococcus sanguinis VMC66] gi|322121806|gb|EFX93552.1| transcriptional repressor [Streptococcus sanguinis VMC66] Length = 225 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDKTSALYTYPLLTLPHKKEVDQFASRLLERQRKVSSLTAYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPTIVGIVV 217 >gi|320638697|gb|EFX08362.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. G5101] Length = 230 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 17/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + N+ + LA G+D + ++ + G+ + + +++ I + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57 Query: 68 T-----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVG 119 T E + + +G+ G+ + + Sbjct: 58 DIADLFTSDFKSNTVYKNSTGEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + SM P GD++ ++ +I GD + + Sbjct: 118 YITDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDK 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y + ++L SQ Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222 >gi|239504169|ref|ZP_04663479.1| putative repressor protein from bacteriophage [Acinetobacter baumannii AB900] Length = 254 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 76/247 (30%), Gaps = 45/247 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----------- 49 M + + + + I + LT LA+ AG+ + ++ + Sbjct: 1 MKNL--ETMGQRIRALRREKKLTQGELAKIAGVSAPNVTGWEKDAYAPKADPLSKMAAYF 58 Query: 50 --------------NRWPSTESIFKILA-------ATNETICQLLDLPFSDGRTTEKKEK 88 + ST + K+L + + ++ +++ Sbjct: 59 GVSTSYITNGDESGPKLDSTVTQLKVLDIEAFKKKYNIPDSEDAVKFLETPVKSFPTQKR 118 Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 +P+ + G G+F + V ++ + K SM Sbjct: 119 YVPVKAYSKMGMDGYFTDMGYEGNAGDGYVPT----------HSAGPRAYGIKGTGDSMF 168 Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 P R G ++ + + + + + + G K + G + L+S+N E Sbjct: 169 PAIRNGWYVVCDPDADLVPNEFVQVCLKDGRCTIKEFVGINGGVLSLLSVNGG-ERFFFE 227 Query: 209 MSDIEWI 215 M ++E I Sbjct: 228 MDEVESI 234 >gi|163867793|ref|YP_001608997.1| hypothetical protein Btr_0553 [Bartonella tribocorum CIP 105476] gi|161017444|emb|CAK01002.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476] Length = 217 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 73/228 (32%), Gaps = 31/228 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I ++ + LT LA KAG + ++ R + E K+ Sbjct: 1 MHIIKKLRKDLGLTQVKLAEKAGTTQPQIKRLEKGE-----RKLTKEWAEKLAPHLGVKP 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL + IP++ + S + F ++ + S + Sbjct: 56 FNLLFPENEEIHPISNAIGMIPVIGKVAASSWMSVEDMDF----GFDDIEYVPSTSKYPA 111 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKP-----RTGDI 180 + K + + + R GD L I+ + I V D ++++ + + Sbjct: 112 HFQ-----FALKIEGNCLNKIARDGDQLICVDIIKAGINVEPNDLVIVERSRFNGQMIER 166 Query: 181 VAKVLISRRGRSIDLMSLN--CCY-PVDTV----EMSDIEWIARILWA 221 AK + + +L + + + + +I + ++LW Sbjct: 167 TAKRI-RQTISGFELWPESTEPNHQEPIKINGATDGEEIRVVGKVLWI 213 >gi|324990700|gb|EGC22636.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] gi|327458798|gb|EGF05146.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 225 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSTLYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|241889648|ref|ZP_04776946.1| XRE family transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863270|gb|EER67654.1| XRE family transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 218 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 21/209 (10%), Positives = 62/209 (29%), Gaps = 6/209 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ + +A+ G+ ++N ++ + +++ + T Sbjct: 5 NRLKSLRTKQKVSQTAVAKHLGVTRAAYNSWEKGKYIPNKKNLDELALYFNVETTYFESE 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + +K+ S + G + Sbjct: 65 YEIVNKYLQLNEINQKKLLTMANELYVSQLYKYQVHAKLSAGLGNFYYE--DYEFDTVYF 122 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGDIVAKVLISRR 189 + D SM P Y GD+ ++ G D ++ + K + Sbjct: 123 DKDISHDIASWIDGDSMEPKYYSGDVALIKKTGYDFDGLDYAVV--YNEETYIKKVF-LE 179 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ L+S+N Y + ++ + + Sbjct: 180 ENTVHLVSINDNYKDIIAPIEEVNIVGVV 208 >gi|302189709|ref|ZP_07266382.1| prophage PSPPH03, Cro/CI family transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length = 290 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 64/261 (24%), Gaps = 56/261 (21%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----------------------- 55 L+ +A +AG+ P + N + R+ + Sbjct: 28 ELKLSQKKIADEAGMTPAAVNLYFKGINPLNTRFAAVLSRMLQEPVESFSPRLAKEIASL 87 Query: 56 -----------------ESIFKILAATNETICQLLDLPFSDGRTTEK----KEKEIPLLY 94 + I K Q + + + K E Sbjct: 88 TSAGKPAASQSSVDIVQQMIAKHGKNLPADARQKIADAVEEVAASVAGANVKGAEYSRPG 147 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIR----------SPHNGIYAIQTQDTRHKTQD 144 G PE+ + Sbjct: 148 VVGDEVWIAHYDVRAAMGGGQIPNEYPEMLQDIRVSPKHLREMGVTFKEHFHLKMITGWG 207 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P + D L+++ ++ GD + + + K L + ++S N + Sbjct: 208 QSMAPTIKDRDPLLVDVTVREFTGDGIYLFSYDEMLYVKRLQKKGKDRFKMISDNKHHDP 267 Query: 205 DTVEMSDIEWIARI--LWASQ 223 + + + D +AR+ +W Q Sbjct: 268 EDIWVDDTHILARVLYVWNGQ 288 >gi|332361797|gb|EGJ39601.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 225 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRVELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSTLYTYPLLTAPHKKEVDQLASRLLERQRKVSSLTAYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|330889589|gb|EGH22250.1| repressor protein c2 [Pseudomonas syringae pv. mori str. 301020] Length = 359 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI + +A + G+ ++ + + E+++ + Sbjct: 142 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 193 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121 AT L + L P+ S + G+ V P Sbjct: 194 RATGFRAEWLAIGEG---PEKDAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 250 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 251 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 310 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 311 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 350 >gi|307320170|ref|ZP_07599590.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306894216|gb|EFN24982.1| putative phage repressor [Sinorhizobium meliloti AK83] Length = 231 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 63/223 (28%), Gaps = 19/223 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I AI +R L +A G+D + + G PSTE++ + Sbjct: 9 QIGTAIRTARKRRGLVQRNIAEHLGIDVAAVGMWE-----GGRNLPSTENLMRAALFLGI 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE----- 122 L + ++ P G D + + Sbjct: 64 NPVAL-ARGELVYINGTDDLADAEIISDPSPPPTGPMDVKLLGVSYGGDDGDFTFNGEVA 122 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP------R 176 A SM+P Y GDI+ GD ++++ + Sbjct: 123 GYVRRPPGIASLHNVFALHVLSDSMVPRYDPGDIIYCG-GRDAVPGDHVVVEMFGESEDQ 181 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G K L R + I + N + ++ + R++ Sbjct: 182 PGKSFIKRLKQRTTKQIIVDQYNPA-KEIIFDRYQVKNLWRVI 223 >gi|148548805|ref|YP_001268907.1| LexA repressor [Pseudomonas putida F1] gi|148512863|gb|ABQ79723.1| SOS-response transcriptional repressor, LexA [Pseudomonas putida F1] Length = 202 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E + G G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGLE-----------AKAEETGLPIIGRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AEQHIEQSCNINPAFFHPQADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ + Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKE 187 >gi|322412342|gb|EFY03250.1| Phage transcriptional repressor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 24/226 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + S LA ++ S+NK + + S ++ +IL Sbjct: 4 GSRLKECRMEKHYSQSELANLLKINRASYNKWETGKSVPNQKNLS--ALARILDVPTTYF 61 Query: 70 CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115 + + + + + +K+ P + G Sbjct: 62 ESEYKIVNTYLQLSTENQGKVDEYADELLQKQQSQEKVIPLFAVEVLSDVSLSAGLGESL 121 Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + + D + SM P+Y G++ ++ ++ G + Sbjct: 122 FDEYETETVYAEEEQY----GYDIAAWIKGDSMEPIYLDGEVALIRASGFDYDG-AVYAL 176 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + K L ++SLN YP + D + ++ Sbjct: 177 SWNDSVYIKKLYREENG-FRMVSLNDNYPDKWIPYEDNPRIVGLVV 221 >gi|330838800|ref|YP_004413380.1| SOS-response transcriptional repressor, LexA [Selenomonas sputigena ATCC 35185] gi|329746564|gb|AEB99920.1| SOS-response transcriptional repressor, LexA [Selenomonas sputigena ATCC 35185] Length = 204 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 53/220 (24%), Gaps = 38/220 (17%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFK 60 + I+ I + PS + GL ++ + E R P+ Sbjct: 11 QQTIFSYIKDFLAKKGYPPSVREIGDAVGLKSSSTVHGYLAKMEESGLIKRDPAKPRAID 70 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL P + N + Sbjct: 71 ILEDKPWERN-----------------------VSIPLVGVVTAGIPILAEENIEDVFSF 107 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + ++ + + SM+ GD + + + D ++ G Sbjct: 108 PQGLIGTH------SKVFVLRVKGRSMINAGIHDGDFVFVKQQETADNNDIVVALVDDGS 161 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N ++ + +++ Sbjct: 162 ATVKRFFKEKD-CIRLQPENDEMEPFY--EKNVRILGKVI 198 >gi|330964902|gb|EGH65162.1| transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 243 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW + Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRSGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y + G + + Sbjct: 65 GPKHPNESANENTGDDTRMAIQQTRNVLRGDVEIQIYMEIESTHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSGEDIARENIRILGWIFWWS 231 >gi|256762517|ref|ZP_05503097.1| transcriptional repressor LexA [Enterococcus faecalis T3] gi|256683768|gb|EEU23463.1| transcriptional repressor LexA [Enterococcus faecalis T3] Length = 206 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 56/225 (24%), Gaps = 32/225 (14%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M + + + + I E P+ + + L TS +E + Sbjct: 1 MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + + T E + EK P + Sbjct: 61 PTKPRAIELTPEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEAS 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + +P + SM+ GD +I+ N GD ++ Sbjct: 104 DFFPLPPDLRTEENAL------FMLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAM 157 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ + + +++ Sbjct: 158 TDEDEATCKRFFR-EVDHIRLQPENDTLAPILLDN--VTILGKVV 199 >gi|297588423|ref|ZP_06947066.1| repressor lexA [Finegoldia magna ATCC 53516] gi|297573796|gb|EFH92517.1| repressor lexA [Finegoldia magna ATCC 53516] Length = 208 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 31/220 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 +I + I R + P+ + ++ TS N + ++G R ++ Sbjct: 8 KQIEILKFIKRYIDYKGYPPAIREIGDSLNINSTSTVHNNILKLEMKGYLRRDPLKNRAL 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + + K + + N +T + Sbjct: 68 EIIDSVYEEQENEIKKETIDVPIVGKVQAGMPI---------------LAIENVEDTFPL 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P Y Q K Q SM GD +I+ N GD ++ Sbjct: 113 PIE-------YTSQGVVFILKVQGESMIEDGILNGDKIIVRKQNTANNGDIVVALMD-ES 164 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I+L N V+ D+E + +++ Sbjct: 165 ATVKRFYRHSD-HIELRPSNSTMYPIIVK--DVEILGKVI 201 >gi|38234011|ref|NP_939778.1| LexA repressor [Corynebacterium diphtheriae NCTC 13129] gi|47605795|sp|P61607|LEXA_CORDI RecName: Full=LexA repressor gi|38200273|emb|CAE49957.1| transcriptional repressor [Corynebacterium diphtheriae] Length = 237 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 19/222 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF- 59 ++I E I PS + AGL TS + +E + R P+ Sbjct: 21 QRRILEVITDAVSLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGYLRRDPNKPRAVD 80 Query: 60 -KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + P E F P + + N Sbjct: 81 VRALPDPIPSKPGRKPGPKKSSVAISPDPAETSPTSFVPIVGSIAAGNPILAEENVDGYF 140 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 P + + SM D +++ S G+ + Sbjct: 141 PFPSEIVG-------DGDLFMLQVEGESMRDAGILHHDWVVVRSQPVAEQGEFVAALI-E 192 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K S + L+ N + E + +++ Sbjct: 193 GEATVKEFHSDSSG-VWLLPHNDAFDPI--PAEHAEIMGKVV 231 >gi|332283989|ref|YP_004415900.1| LexA repressor [Pusillimonas sp. T7-7] gi|330427942|gb|AEC19276.1| LexA repressor [Pusillimonas sp. T7-7] Length = 220 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 62/217 (28%), Gaps = 21/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I E I R P + +AR G + ++ R + E Sbjct: 9 QQQILELIRSEINRTGFPPTRAEIARALGFKSA---NAAEDHLKALARKGAIELTAGASR 65 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T + P L+ G G+ E Sbjct: 66 GIRLTDVSQVAAPSPTLIEQASSALSQLLVPLV----------GRVAAGHPILAAEHVER 115 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 QT D + + SM GD+L + + G ++ + ++ Sbjct: 116 EIGIEPALFSQTPDYLLRVRGLSMRDAGILDGDLLAVKKSPDARNGQIVVARI-GDEVTV 174 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIA 216 K G+ I+L+ N + V SD IE IA Sbjct: 175 KRFAR-TGKHIELLPENPDFEPIIVTASDEFSIEGIA 210 >gi|239616430|ref|YP_002939752.1| SOS-response transcriptional repressor, LexA [Kosmotoga olearia TBF 19.5.1] gi|239505261|gb|ACR78748.1| SOS-response transcriptional repressor, LexA [Kosmotoga olearia TBF 19.5.1] Length = 208 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 56/215 (26%), Gaps = 21/215 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I E I++ + + PS R R + + + + Sbjct: 7 QREILEYIEKFIKLNGYPPS------------IRDICRDFNISSPRG-AAKHLEALEKKG 53 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + P + N+ ++ VP Sbjct: 54 YIERTGVSRGIRVIRDASGGSVTLENDVVMLPVVGVIAAGEAIRAIENRDESIPVPMWMV 113 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y K SM GD +++ N GD ++ + K Sbjct: 114 RRGFEY------YVLKVTGNSMIESHILNGDYVVIRKQEWANNGDIVVALIDGENATLKR 167 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G + L+ N +E ++ +++ Sbjct: 168 F-EHEGPKVRLVPSNPEMLPIVLEADRVKIQGKLV 201 >gi|300855281|ref|YP_003780265.1| LexA repressor [Clostridium ljungdahlii DSM 13528] gi|300435396|gb|ADK15163.1| LexA repressor [Clostridium ljungdahlii DSM 13528] Length = 205 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 53/215 (24%), Gaps = 29/215 (13%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I+E I PS + GL TS S E + K Sbjct: 11 QIYEFIKTQIREKGYPPSVREICAGVGLKSTSTVHSH------------LEKLEKK---- 54 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + L P + N + +P Sbjct: 55 GFIKRDSSKSRTIEIINRSVPKTTKKELIDIPIVGTITAGMPILAVENIEDVFPLPIEYV 114 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + Q K Q SM+ GD+ I+ GD + + K Sbjct: 115 KNKN------QLFILKVQGESMIDAGILDGDMSIIEQTNFAENGDIVAALID-NEATLKR 167 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + I L N V D + I +++ Sbjct: 168 FFKEKD-HIRLQPENESMSPIIV--DDCKIIGKLV 199 >gi|327480337|gb|AEA83647.1| LexA repressor [Pseudomonas stutzeri DSM 4166] Length = 202 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 36/223 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MIKLTPRQTEILAFIKRCLEDNGYPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E E G G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPDFEPAPAET-----------GLPIIGRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L +++ + G ++ + Sbjct: 94 AQQHVEESCQISPAFFHPRADYLLRVHGMSMKDIGIYDGDLLAVHTTREARNGQIVVAR- 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216 ++ K G+ + L++ N + V++ ++ Sbjct: 153 VGDEVTVKRFKRD-GKKVWLLAENPEFAPIEVDLEHQELVIEG 194 >gi|284008094|emb|CBA74288.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 233 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 23/226 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + + LA+ G+ +S + G G I K+L E + Sbjct: 5 ERLKQAMQEKGFSQGALAKAVGMAQSSVWRLTSGGALGTK---KLIKIAKVLDVNPEWLS 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--FDSGVFPTGNKWNTVGVPEIRSPHN 128 + + G + + + ++ + N+ V P +R + Sbjct: 62 DGIGTMKAHGIKSNNQLIIDSVSHYTDKSKTDEKDNNVVKLKLYNRIEWVLSPSVRGEKD 121 Query: 129 GI--YAIQTQDT-----------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + I D SM P+ ++ + L+++I+ ++ + Sbjct: 122 TYSMFLIPKNIVEETRSSIKDSISIIAPDDSMSPIIQENSTVALDTSIKDIKNGKIYLVS 181 Query: 176 RTGDIVAKVLISRRGRSIDL---MSLNCCYPVDTVEMSDIEWIARI 218 G + + L S I L S YP V S++ I ++ Sbjct: 182 YGGVFMIRGLYSLPENKIKLKNYKSD--DYPELIVSASELLIIGKV 225 >gi|28378694|ref|NP_785586.1| LexA repressor [Lactobacillus plantarum WCFS1] gi|254556892|ref|YP_003063309.1| LexA repressor [Lactobacillus plantarum JDM1] gi|300768207|ref|ZP_07078112.1| repressor lexA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180834|ref|YP_003924962.1| LexA repressor [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258039|sp|Q88VI6|LEXA_LACPL RecName: Full=LexA repressor gi|28271531|emb|CAD64435.1| transcription repressor of the SOS regulon [Lactobacillus plantarum WCFS1] gi|254045819|gb|ACT62612.1| LexA repressor [Lactobacillus plantarum JDM1] gi|300494271|gb|EFK29434.1| repressor lexA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046325|gb|ADN98868.1| LexA repressor [Lactobacillus plantarum subsp. plantarum ST-III] Length = 210 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 55/230 (23%), Gaps = 40/230 (17%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50 M+ S K + I P+ + L TS ++ ++ G + Sbjct: 1 MSKTSESKQMAVLRFIYERVNEKGYPPTVREIGEAVDLSSTSTVHGHISRLEKKGYIQK- 59 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 P+ ++ + + P + Sbjct: 60 -DPTKPRAIEV------------------TPAGFEALGVETTPHQIPVLGTVTAGQPILA 100 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 + +P+ + SM+ + GD +I+ + GD Sbjct: 101 VQEATDYFPIPKELESFG------GDLFMLTIRGESMINIGIMNGDQVIVRRQSSADNGD 154 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K L N + + + +++ Sbjct: 155 IIIAMTDENEATCKRFFK-EADHYRLQPENDTMAPIILNN--VSVLGKVV 201 >gi|28871274|ref|NP_793893.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000] gi|213970892|ref|ZP_03399015.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1] gi|301383758|ref|ZP_07232176.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato Max13] gi|302059454|ref|ZP_07250995.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato K40] gi|302133667|ref|ZP_07259657.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854524|gb|AAO57588.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213924415|gb|EEB57987.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1] gi|330966535|gb|EGH66795.1| repressor protein c2 [Pseudomonas syringae pv. actinidiae str. M302091] gi|331015699|gb|EGH95755.1| repressor protein c2, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 217 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 22/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H++I +AI + +A + G+ ++ + + E+++ + Sbjct: 1 MTRHERIAKAIAASGRKKG----EIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121 AT L + + I + G+ V P Sbjct: 53 RATGFRAEWLAIGEGPEKEEFDANVAMIDQPKMS----FRYPVISWVSAGSWEEAVQPYP 108 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 109 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGRLVIAKL 168 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + + D I Sbjct: 169 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECDA-DCRIIG 208 >gi|320325651|gb|EFW81713.1| repressor protein c2, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 359 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI + +A + G+ ++ + + E+++ + Sbjct: 142 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 193 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121 AT L E L P+ S + G+ V P Sbjct: 194 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 250 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 251 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 310 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 311 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 350 >gi|258436121|ref|ZP_05689104.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257848810|gb|EEV72795.1| conserved hypothetical protein [Staphylococcus aureus A9299] Length = 242 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K L + Sbjct: 10 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 67 Query: 71 QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGG---------------FFDSG 107 + ++ +L + Sbjct: 68 GFDISKNRKIENNDITSIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 127 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 TG +I +T D SM P+ ++G + Sbjct: 128 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 187 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V S+I+ + +++ Sbjct: 188 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 241 >gi|237741382|ref|ZP_04571863.1| LexA repressor [Fusobacterium sp. 4_1_13] gi|294784141|ref|ZP_06749442.1| LexA repressor [Fusobacterium sp. 3_1_27] gi|229430914|gb|EEO41126.1| LexA repressor [Fusobacterium sp. 4_1_13] gi|294488211|gb|EFG35556.1| LexA repressor [Fusobacterium sp. 3_1_27] Length = 219 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 11/214 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + R+ +H + GLA+K L T +K ++ P +++ + + A Sbjct: 4 GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVVAVYPEE 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 ++L + + +KE + S G G + + P+ P Sbjct: 58 REILKKEYLKETLPDIFQKEDAIKIVSNSEILNLPVYGKASAGRGYLNMDSPDYYMPILR 117 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SM P G+ +++ +++ + + K L + Sbjct: 118 GNF-SKRSFFVEITGNSMEPTLEDGEFALVDPDNTAYSKNKIYVVTYNDEGYIKRLEMKD 176 Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + I L S N Y + + R++ Sbjct: 177 KLKIITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210 >gi|224372655|ref|YP_002607027.1| hypothetical protein NAMH_0610 [Nautilia profundicola AmH] gi|223589461|gb|ACM93197.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 205 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 66/217 (30%), Gaps = 23/217 (10%) Query: 7 KKIWEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +KI E I + + +A+ G+ P + K+ E + Sbjct: 4 EKIIEKIKDILSLEIGERKVLNKDVAKALGITPEHLSMLKKRNKIP------FEELAYFC 57 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A ++ LL + TE ++ +F G Sbjct: 58 AKRKISLNWLLFDQQIENIATETEKFSKIR----------YFKDINASAGGGALNFDENY 107 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + I SM P + G I+ ++ + + + + Sbjct: 108 ETLYIDKKI-IDKDLDAINVIGDSMEPTIKDGSIIFIDRNDKSVQNGGIFVVSTPAGVFV 166 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + R I+L+S N YP +TV D E I +++ Sbjct: 167 KRINLRSDGKIELISDNKLYPGETV--EDAEIIGKVV 201 >gi|191174537|ref|ZP_03036034.1| regulatory protein [Escherichia coli F11] gi|300992733|ref|ZP_07180010.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|190905183|gb|EDV64825.1| regulatory protein [Escherichia coli F11] gi|300305229|gb|EFJ59749.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|324015072|gb|EGB84291.1| peptidase S24-like domain protein [Escherichia coli MS 60-1] Length = 230 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 17/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + N+ + LA G+D + ++ + G+ + + +++ I + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGV 57 Query: 68 TICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 I L E + + +G+ G+ + + E Sbjct: 58 DIADLFTSALKSNTVYKNSNDEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIE 117 Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R+ + + SM P GD++ ++ +I GD + + Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y + ++L SQ Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222 >gi|320529087|ref|ZP_08030179.1| repressor LexA [Selenomonas artemidis F0399] gi|320138717|gb|EFW30607.1| repressor LexA [Selenomonas artemidis F0399] Length = 214 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 55/221 (24%), Gaps = 32/221 (14%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 ++ +I + I PS + GL +S ++ Sbjct: 17 STRRQSEILQYIKDFLVDKGYPPSVREIGTAVGLKSSS-------------------TVH 57 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + LA E D + + P + N Sbjct: 58 RYLAMLEENGAIRRDATKPRAIDIMGENPWGRTIPIP-LVGTVTAGEPILAEQNVEEIFS 116 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 P + Q SM+ + GD +++ N GD ++ Sbjct: 117 FPRALIGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALIDGE 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N +D++ + +++ Sbjct: 171 TATVKRFYREK-TCIRLQPENDSMEPFY--ETDVQIMGKVI 208 >gi|218780516|ref|YP_002431834.1| SOS-response transcriptional repressor, LexA [Desulfatibacillum alkenivorans AK-01] gi|259494471|sp|B8FIX5|LEXA_DESAA RecName: Full=LexA repressor gi|218761900|gb|ACL04366.1| SOS-response transcriptional repressor, LexA [Desulfatibacillum alkenivorans AK-01] Length = 203 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 60/225 (26%), Gaps = 40/225 (17%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + K+ ++E I H P+ L + G P + + + + Sbjct: 1 MEDLTEKQSLVFEFIMEYTADHGYPPTVRELCDELGFKSPNTAHFHLKGLKDK------- 53 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++ + K + I +L PP G G G Sbjct: 54 ----------------------GYIQSAKGKNRGITVLKTPPGAGGKIPLVGRIAAGAPI 91 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 V + + + + + SM GD +++ GD + Sbjct: 92 LAVENVMDTLDVDRAFFGSSDAFSVRVEGDSMIEAHIEDGDYVVIKPTATPRNGDIVAAL 151 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIA 216 ++ K G I+L N Y D+ + Sbjct: 152 VN-DEVTLKYFHRD-GSRIELRPANVRYKPFCYTEEDFIDVRVLG 194 >gi|308047905|ref|YP_003911471.1| SOS-response transcriptional repressor, LexA [Ferrimonas balearica DSM 9799] gi|307630095|gb|ADN74397.1| SOS-response transcriptional repressor, LexA [Ferrimonas balearica DSM 9799] Length = 207 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 33/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++++ + + + + P + +AR+ G + E Sbjct: 1 MKPLTPRQNQVFDLVRQHMQDTGMPPTRAEIARQLGFKSA---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L P G G G Sbjct: 46 HLKALAR------------KGFIEIVPGTSRGIRLLYNEPEPEQLGLPLIGRVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E +G + + + + SM + GD+L ++ G ++ + Sbjct: 94 AQEHVETHYQMDGNLFRPSANYLLRVRGDSMKEIGILDGDLLAVHQTQDARNGQVVVARV 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K R G + L + N Y V++ D Sbjct: 154 GEDEVTVKRFERR-GNVVYLHAENAEYEPIVVDLED 188 >gi|167032691|ref|YP_001667922.1| LexA repressor [Pseudomonas putida GB-1] gi|166859179|gb|ABY97586.1| transcriptional repressor, LexA family [Pseudomonas putida GB-1] Length = 202 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E K + G G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGLETK-----------AEESGLPIIGRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AEQHIEQSCNINPAFFHPQADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ + Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKE 187 >gi|71903695|ref|YP_280498.1| phage transcriptional repressor [Streptococcus phage 6180.1] gi|71802790|gb|AAX72143.1| phage transcriptional repressor [Streptococcus phage 6180.1] Length = 247 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 66/245 (26%), Gaps = 41/245 (16%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +I + + +T LA+ G + + + R I K A Sbjct: 4 LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGN-----RQLDEVDIRKYAKALKIE 58 Query: 69 ICQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 QL D S + + N + Sbjct: 59 PQQLFDYSSSPTNPQVELIPSTLQKINSTSSQLEHSRQIIVLDTAETLLEQQKEIKNNED 118 Query: 117 TVGVPEIRSPHNGIYAIQ-------------------TQDTRHKTQDTSMLPLYRKGDIL 157 T+ + ++ + D SM P Y GD + Sbjct: 119 TIAELFSYNYYDHAASAGTGQYLNDVQVEKIELPVDYDADFVIPVYGDSMEPKYHSGDYV 178 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS-DIEW 214 + ++++ GD + GD K L+ + L SLN YP ++ D Sbjct: 179 FVKLSVELTDGDIGV-FEYYGDAYIKQLLINAEGAF-LHSLNQCGDYPDIPIDRDSDFRI 236 Query: 215 IARIL 219 I ++ Sbjct: 237 IGEVM 241 >gi|225619569|ref|YP_002720826.1| LexA repressor [Brachyspira hyodysenteriae WA1] gi|225214388|gb|ACN83122.1| LexA repressor [Brachyspira hyodysenteriae WA1] Length = 208 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 30/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT + + I+ + + + P + + +T Sbjct: 1 MTELTDKQRDIFNFLQKFTNENGY------------PPTVKEIMVHFNFASPTAVTTHLT 48 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + + + I + G T Sbjct: 49 ALEKKGYVKKTGKRARGSVPIDSSGKGNHNMIKIPLLANEVKAGLLMD--VADETVEETY 106 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P+ A + K SM+ ++GD+++++ + + + GD ++ K Sbjct: 107 SLPKSI-------AQDENNFLMKVIGDSMINAHIKEGDMVLVHPSNEADNGDIVVAKIDD 159 Query: 178 G---DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +I K + + L+S N YP I + +++ Sbjct: 160 NGNEEITIKRFFREKD-CVKLVSENNNYPPIE--RESISIVGKVI 201 >gi|206560015|ref|YP_002230779.1| LexA repressor [Burkholderia cenocepacia J2315] gi|229621204|sp|B4E8S4|LEXA_BURCJ RecName: Full=LexA repressor gi|198036056|emb|CAR51950.1| LexA repressor [Burkholderia cenocepacia J2315] Length = 215 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 62/214 (28%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A L G G+ Sbjct: 54 GVIELAAG----------ASRGIRLLGVDDAPHQFTLPHAALMQLSLPLVGRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L+ R G ++L++ N Y V+ Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195 >gi|187928268|ref|YP_001898755.1| LexA repressor [Ralstonia pickettii 12J] gi|229621742|sp|B2UAG1|LEXA_RALPJ RecName: Full=LexA repressor gi|187725158|gb|ACD26323.1| transcriptional repressor, LexA family [Ralstonia pickettii 12J] Length = 216 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 23/216 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I + +R P + +A + G + + E Sbjct: 1 MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA R + L G G+ Sbjct: 45 EHLRALARKGVIELTPGASRGIRLRAAGDTAQHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + D K + SM GD+L + A + G ++ + Sbjct: 105 AAEHIDRQYQVDPSLFSAQPDFLLKVRGMSMRDAGILDGDLLAVQRASEATNGKIVVAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + GR ++L++ N + V++ Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198 >gi|50914083|ref|YP_060055.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|50903157|gb|AAT86872.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 281 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 75/248 (30%), Gaps = 36/248 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------------ 48 M + S + I +++ LT LA+K + PT+ + + + Sbjct: 35 MANLS-----DNIKYFRKQNKLTQKELAKKLKIAPTAISAWEVGRNKPLMDNIEQMTSIF 89 Query: 49 --RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP----SGSGG 102 + I+KI + + + + + +++ +L Sbjct: 90 GIPKSKLLGDEIYKIQETASPELIPSTLQKITATSSQLEHSRQLIVLDTAETLLNQQKEI 149 Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ----------DTRHKTQDTSMLPLYR 152 + +N P + +Q + D SM P Y Sbjct: 150 KNNEDTVVELFSYNYYDQPASAGTGQYLNDVQVETIELPVDYDADFVIPVYGDSMGPEYH 209 Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-D 211 D + + ++ ++ GD + GD K L+ + L S N Y ++ D Sbjct: 210 SEDYVFVKLSVDLSDGDIGV-FEYYGDAYIKQLLINAEGAF-LHSFNSKYDDIPIDRDSD 267 Query: 212 IEWIARIL 219 I ++ Sbjct: 268 FRIIGEVI 275 >gi|221195127|ref|ZP_03568183.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] gi|221185030|gb|EEE17421.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] Length = 217 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 15/217 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I +R NLT LA K + ++ + + + P +I +I + N + Sbjct: 3 LASNIKYYRQRENLTQEELAEKVDVARSTVTQWETGWSQ-----PRMGAIQRIASVLNVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ S T+ P G G+ V + E S Sbjct: 58 VSDLVADSISMNSTSRPAASITPTPSRVAY----APLLGRVHAGDAQEPVMLEEKISAPY 113 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + + M +Y +G ++++ + G ++ D V + + Sbjct: 114 EVIQHRPHAYFLEVEGMCMGNVYPEGCYVLVDPDVVPQNGSIAVVSIDGADYVMRRMFR- 172 Query: 189 RGRSIDLMSLN--CCYPVDTV---EMSDIEWIARILW 220 ++ L + V + ++++ ++W Sbjct: 173 GANTLVLSPDTYVEGFEDIVVSNPDDHEVKFAGAVVW 209 >gi|220912239|ref|YP_002487548.1| LexA repressor [Arthrobacter chlorophenolicus A6] gi|254809086|sp|B8HG97|LEXA_ARTCA RecName: Full=LexA repressor gi|219859117|gb|ACL39459.1| SOS-response transcriptional repressor, LexA [Arthrobacter chlorophenolicus A6] Length = 249 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 58/223 (26%), Gaps = 13/223 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTES 57 KKI E I R + PS + GL S ++ ++ G R + P Sbjct: 25 QKKILETIQRSVNVNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRPRAME 84 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + L + + G G Sbjct: 85 VLMPLTLDGGATGRTARQAAEPAAAAAPGITASVTELPTALDTAMVPLVGRIAAGGPILA 144 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176 V E P Q + K SM+ GD +++ GD + Sbjct: 145 DQVVEDVMPLPRQLVGQGELFMLKVAGDSMVDAAICDGDWVVVRRQADAANGDIVAALLD 204 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K +R L+ N Y + + + +++ Sbjct: 205 -DEATVKTF-RQRDGHTWLLPQNTQYEPILGDHA--TIMGKVV 243 >gi|332366115|gb|EGJ43871.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 225 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSALYTYPLLTAPHKKEVDQLASRLLERQRKVSSLTAYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|330877304|gb|EGH11453.1| repressor protein c2 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 217 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 22/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H++I +AI + +A + G+ ++ + + E+++ + Sbjct: 1 MTRHERIAKAIAASGRKKG----EIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121 AT L + + I + G+ V P Sbjct: 53 RATGFRAEWLAIGEGPEKEAFDANVAMIDQPKMS----FRYPVISWVSAGSWEEAVQPYP 108 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 109 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGRLVIAKL 168 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + + D I Sbjct: 169 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECDA-DCRIIG 208 >gi|256846554|ref|ZP_05552011.1| LexA repressor [Fusobacterium sp. 3_1_36A2] gi|256718323|gb|EEU31879.1| LexA repressor [Fusobacterium sp. 3_1_36A2] Length = 219 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 11/214 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + R+ +H + GLA+K L T +K ++ P +++ + + A Sbjct: 4 GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVVAVYPEE 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 ++L + + +KE + S G G + + P+ P Sbjct: 58 REILKKEYLKETLPDIFQKEDAIKIVSNSEILNLPVYGKASAGRGYLNMDSPDYYMPILK 117 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SM P G+ +++ +++ + + K L + Sbjct: 118 GNF-SKRSFFVEITGNSMEPTLEDGEFALVDPDNTAYSKNKIYVVTYNDEGYIKRLEMKD 176 Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + I L S N Y + + R++ Sbjct: 177 KLKIITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210 >gi|219563222|ref|YP_002455814.1| Ci-like repressor [Lactobacillus phage Lv-1] gi|215536989|gb|ACJ68926.1| Ci-like repressor [Lactobacillus phage Lv-1] Length = 219 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 59/214 (27%), Gaps = 15/214 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + + T L+ G +S + + + R E I + + Sbjct: 12 LGKNLSYLMGKQHETIPQLSDVTGAAYSSISDWR--TGKKVPRSGYLEKIAQHYSVNISD 69 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + P + N + V + Sbjct: 70 LLFTDLENGVSTNEFQSISPVAKAEHQIPVIGTIACGEPILAEQNIEDYVSLVP------ 123 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVAKVLI 186 + K + SM P G I I+ V G+ +L+ + K + Sbjct: 124 ---SDDATYFGLKCRGHSMEPTIHDGAIAIIRQQPTVEDGEIAAVLVGEDANEATLKRV- 179 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 +I L+ N + D I + + + Sbjct: 180 RHVNNAILLVPDNENFEPILGTKKDPIRIVGKAV 213 >gi|148717848|ref|YP_001285320.1| CI-like repressor [Staphylococcus phage 80alpha] gi|103058634|gb|ABF71577.1| CI-like repressor [Staphylococcus phage 80alpha] Length = 238 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K L + Sbjct: 6 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63 Query: 71 QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGG---------------FFDSG 107 + ++ +L + Sbjct: 64 GFDISKNRKIENNDIASIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 123 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 TG +I +T D SM P+ ++G + Sbjct: 124 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 183 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V S+I+ + +++ Sbjct: 184 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 237 >gi|19704910|ref|NP_602405.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327734|ref|ZP_06870274.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19712805|gb|AAL93704.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155172|gb|EFG95949.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 219 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 11/214 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + R+ +H + GLA+K L T +K ++ P +++ + + A Sbjct: 4 GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVVAVYPEE 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 ++L + + +KE + S G G + + P+ P Sbjct: 58 SEVLKKEYLKETLPDIFQKEEAIKIVSNSEVLNLPVYGKASAGRGYLNMDTPDYYMPILK 117 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SM P G+ +++ +++ + + K L + Sbjct: 118 GNF-SKRSFFVEITGNSMEPTLEDGEFALVDPDNTSYSKNKIYVVTYNDEGYIKRLEMKD 176 Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 R I L S N Y + + R++ Sbjct: 177 KLRVITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210 >gi|94990047|ref|YP_598147.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] gi|94543555|gb|ABF33603.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] Length = 249 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 40/240 (16%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + NLT LA + G ++ +K ++ + E I K + + Sbjct: 11 VKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYE--IEEIAKFFGVEPKKMMFG 68 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF----------------------------- 103 + + + + Sbjct: 69 DNPTSINPQVELIPSTLQKINSTSSQLEHSRQIIVLDTAETLLEQQKEIKNNEDTIAELF 128 Query: 104 ---FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + G V + Y D SM P Y GD + + Sbjct: 129 SYNYYDHAASAGTGQYLNDVQVEKIELPVDY---DADFVIPVYGDSMEPKYYSGDYVFIK 185 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 ++++ GD + GD K L+ + L SLN Y V+ D I ++ Sbjct: 186 LSVELADGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNGKYEDIPVDRDSDFRIIGEVV 243 >gi|25453090|sp|Q8NP86|LEXA_CORGL RecName: Full=LexA repressor gi|21324700|dbj|BAB99323.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 20/223 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57 ++I E I PS + AGL TS + +E + P Sbjct: 15 QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 74 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + + + + F P S + N Sbjct: 75 VRHLPETESRSSKAATQAKSKAPQAGVHDPELAGQTSFVPVVGKIAAGSPITAEQNIEEY 134 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P + SM GD +++ S G+ + Sbjct: 135 YPLPAEIVG-------DGDLFMLQVVGESMRDAGILTGDWVVVRSQPVAEQGEFVAAMID 187 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K I L+ N + + E + +++ Sbjct: 188 -GEATVKEFHKDSSG-IWLLPHNDTFAPI--PAENAEIMGKVV 226 >gi|288959078|ref|YP_003449419.1| transcriptional regulator [Azospirillum sp. B510] gi|288911386|dbj|BAI72875.1| transcriptional regulator [Azospirillum sp. B510] Length = 222 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 13/214 (6%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + + L+ LA AG NK + R + + K+ LL Sbjct: 9 RELRQAAGLSQEKLADLAGTSQPQINKLETGQ-----RKMTVDWAVKLAGPLGIEPAVLL 63 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----GNKWNTVGV---PEIRS 125 L + + + + + P G + + P Sbjct: 64 GLDVPAAPAPTRPARPALPPLLRTTPAQQAQAAASMPVRAAARGGGDQEMFLEDGPIDWI 123 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 SM+P +R +L +N G +++ R ++ K Sbjct: 124 ARPDYLKNARDPYAMYVVGESMMPRFRPAQLLHVNPHKPPAPGAGVVVVKRNKAVLVKEF 183 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + R S+ L +V + +++ + ++ Sbjct: 184 VRRASDSVILREYRPAEREFSVALEELDTLHTVV 217 >gi|296450739|ref|ZP_06892492.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296260583|gb|EFH07425.1| XRE family transcriptional regulator [Clostridium difficile NAP08] Length = 246 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 30/236 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARK-----AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I I ++ L+ LA + + +K + E T + K+L Sbjct: 4 IGRIIAENRKKKGLSQPELAELLSQQGIDVTAKAISKWETDAREPGLHVFLT--LCKLLD 61 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV--------------- 108 + P+S ++ K+ Y + G F+ + Sbjct: 62 IEDIYDAYFGKNPYSVMDGLNQEGKDKIKDYAKILKASGLFEPVIANIIPFRKKEIFMDI 121 Query: 109 ----FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 G P+ A D + SM P Y G+I + Sbjct: 122 FGDAVSAGTGNFLTDSPKESYEVGD-LAPDNADFGVRISGDSMEPEYHNGEIAWIQQKDS 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + G+ + I GD K L + L+SLN Y ++ SD + +++ Sbjct: 181 ICNGE-VGIFYLNGDAYIKKLHDEPDG-LFLISLNKKYKPIAIQESDSFKIFGKVV 234 >gi|120599311|ref|YP_963885.1| putative prophage repressor [Shewanella sp. W3-18-1] gi|120559404|gb|ABM25331.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24 [Shewanella sp. W3-18-1] Length = 219 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 50/213 (23%), Gaps = 13/213 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +T LA + P R PS I IL N L Sbjct: 7 VKSRMKELGITQERLAELEEVTPGGMGHWLNG-----RREPSLSKIASILKRLNLDSLVL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRSPHNGIY 131 + L + Sbjct: 62 HSDGMLEYPDEALVNVSNANLSTKYLKKFPVISYVKAGVWSEAVEESPASASDEWYETTE 121 Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186 + SM + +G +++++ G ++ + K L+ Sbjct: 122 RTSEHCFWLRVIGDSMTSPSGVSFPEGTLILVDPDRDRLNGSFVVAKLTDVNEATFKKLV 181 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ L LN YP + + + I ++ Sbjct: 182 VDAGQKF-LKPLNNAYPTLPINGN-CKIIGVVV 212 >gi|149195301|ref|ZP_01872389.1| hypothetical protein CMTB2_00374 [Caminibacter mediatlanticus TB-2] gi|149134565|gb|EDM23053.1| hypothetical protein CMTB2_00374 [Caminibacter mediatlanticus TB-2] Length = 206 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 18/213 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +KI + + + +A+ L P + + KR E I A Sbjct: 8 EKIKDILSNEITDRKILNKDVAKALNLTPENLSVLKRRNKIP------YEEIAYFCAKRK 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +I LL + ++ I +F G Sbjct: 62 ISINWLLFDQNEEEIAKNTEKFAIIR----------YFKDINASAGGGAINFDENYETIY 111 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + I SM P + G I+ ++ I ++ G + + K + Sbjct: 112 IDKKL-IDKNLDAIHVVGDSMEPTIKDGSIIFIDRNIPLSSGGIYV-ISTNAGVFVKRIN 169 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + I+L+S N YP++ V++ +I+ I +++ Sbjct: 170 IKSSGEIELISDNKIYPIEKVKLEEIKVIGKVV 202 >gi|251782374|ref|YP_002996676.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391003|dbj|BAH81462.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127256|gb|ADX24553.1| Phage transcriptional repressor [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 230 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 21/230 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FS ++ A R+A++ L+ L + ++ + + ++ + E + + Sbjct: 1 MFSGDQLKTA--RLAKQ--LSQEELGQLLNVNKMTISNWEKGKNTPNQKHF--EQLLSLF 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + + L + ++++ + ++ Sbjct: 55 GVTADYFNKDHRLLIPFNQLLPVNKEKVISYSEQLLNQQIPITKLPNKSKKLYSYRVYES 114 Query: 123 IRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + + Y D SM P Y G+++++ G Sbjct: 115 LSAGTGYSYFGDGNFDVVFHDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQDSFDYDG-A 173 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G K + + L+SLN Y + I +I+ Sbjct: 174 IYAVEWDGQTYIKKVYREEDG-LRLVSLNKKYSDKFAPYDEDPRIIGKII 222 >gi|26988867|ref|NP_744292.1| LexA repressor [Pseudomonas putida KT2440] gi|60392608|sp|P0A153|LEXA1_PSEPK RecName: Full=LexA repressor 1 gi|60392613|sp|P0A154|LEXA_PSEPU RecName: Full=LexA repressor gi|24983673|gb|AAN67756.1|AE016406_11 LexA repressor [Pseudomonas putida KT2440] gi|3980196|emb|CAA44749.1| LexA repressor [Pseudomonas putida] gi|313499738|gb|ADR61104.1| LexA [Pseudomonas putida BIRD-1] Length = 202 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E + G G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGLE-----------AKAEEAGLPIIGRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AEQHIEQSCNINPAFFHPQADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ + Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKE 187 >gi|320327066|gb|EFW83080.1| repressor protein c2, putative [Pseudomonas syringae pv. glycinea str. race 4] Length = 350 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI + +A + G+ ++ + + E+++ + Sbjct: 133 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 184 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121 AT L E L P+ S + G+ V P Sbjct: 185 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 241 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 242 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 301 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 302 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 341 >gi|309782233|ref|ZP_07676962.1| repressor LexA [Ralstonia sp. 5_7_47FAA] gi|308919004|gb|EFP64672.1| repressor LexA [Ralstonia sp. 5_7_47FAA] Length = 216 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 66/216 (30%), Gaps = 23/216 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I + +R P + +A + G + + E Sbjct: 1 MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA R + + L G G+ Sbjct: 45 EHLRALARKGVIELTPGASRGIRLRAAGETAQHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + D K + SM GD+L + A + G ++ + Sbjct: 105 AAEHIDRQYQVDPSLFSAQPDFLLKVRGMSMRDAGILDGDLLAVQRASEATNGKIVVAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + GR ++L++ N + V++ Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198 >gi|167746516|ref|ZP_02418643.1| hypothetical protein ANACAC_01226 [Anaerostipes caccae DSM 14662] gi|317471331|ref|ZP_07930688.1| LexA repressor [Anaerostipes sp. 3_2_56FAA] gi|167653476|gb|EDR97605.1| hypothetical protein ANACAC_01226 [Anaerostipes caccae DSM 14662] gi|316901195|gb|EFV23152.1| LexA repressor [Anaerostipes sp. 3_2_56FAA] Length = 205 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 62/220 (28%), Gaps = 35/220 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++I E I P+ + L TS + + +G R T+ Sbjct: 9 KQEQILEYIKSQILEKGYPPAVREICAAVSLKSTSSVHSHLESLESKGYIRRDPTKPRA- 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +++ D + T ++ IP++ +G + T N + + Sbjct: 68 ------------IEIIDDDFQLTRREVVNIPIVGTVTAG------EPIIATENVEDYFPM 109 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + SM+ + GD++I+ D ++ Sbjct: 110 LPE-------FIGSKNTFILHVKGDSMINIGIYDGDMVIVEETPSAENNDIVVALI-EDS 161 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V ++ + +++ Sbjct: 162 ATVKRFFK-EDGHYRLQPENDFMDPIIV--DEVSILGKVI 198 >gi|237803699|ref|ZP_04591284.1| putative phage repressor [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025681|gb|EGI05737.1| putative phage repressor [Pseudomonas syringae pv. oryzae str. 1_6] Length = 277 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 15/196 (7%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86 LA KAG + + + R + ++ + + Q L K+ Sbjct: 90 LATKAGKNLS-----------EKVRERMLAAAAELESDSTAESDQTLLPASYANLRPRKE 138 Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 E IP + G + N V +I Y+ + S Sbjct: 139 EILIPQYDVRGAMGHGQVPADY--NEAVRNLVVREDILREKGVSYSSPSALAMITGWGQS 196 Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 M D++I++ I G+ + + ++ K ++ L+S N Y T Sbjct: 197 MEGTINDKDLVIVDRGINEFIGEGIYLLTWHQELYIKRMMRLNEDHYRLISDNQHYENQT 256 Query: 207 VEMSDIEWIARI--LW 220 + D+ A++ +W Sbjct: 257 ARIDDVAIHAKVLFIW 272 >gi|53728788|ref|ZP_00135141.2| COG1974: SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 169 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 48/170 (28%), Gaps = 17/170 (10%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 P + I I +L + K PL+ +G F Sbjct: 2 PDLDDIEVIAKVIGIEPAKLAFGDPNVEPVIVKDSYSYPLVSSIQAGVWTESCD--FRDS 59 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 ++ + + SM P + +GD+++++ Q GD + Sbjct: 60 QGYDYIDSEIDAGE---------DGFFLRVSGMSMEPKFSEGDLVLIDVRKQPRPGDFVA 110 Query: 173 IKPRTGDIVAKVLISR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G+ K +L+ LN +P + DI I Sbjct: 111 AVNGNGEATLKRYRELGDLSPSGNPHFELVPLNPDFPTLSSMKQDIRIIG 160 >gi|326803494|ref|YP_004321312.1| repressor LexA [Aerococcus urinae ACS-120-V-Col10a] gi|326651188|gb|AEA01371.1| repressor LexA [Aerococcus urinae ACS-120-V-Col10a] Length = 203 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 5/124 (4%) Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSMLPL-YRKGD 155 G G G + + P + + + + SM+ GD Sbjct: 75 VDQPGIPIIGTVTAGQPIDAYEDVDGYFPTPPSLNSQDGEYFMLQIRGESMIETGILDGD 134 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 +I+ + GD ++ + K L N + D+ + Sbjct: 135 YVIVRQQSSASNGDIVIAMTDDDEATCKRFFK-ENGHFRLQPENASLEPIIL--DDVTIL 191 Query: 216 ARIL 219 +++ Sbjct: 192 GKVV 195 >gi|269121509|ref|YP_003309686.1| phage repressor [Sebaldella termitidis ATCC 33386] gi|268615387|gb|ACZ09755.1| putative phage repressor [Sebaldella termitidis ATCC 33386] Length = 217 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARK-----AGLDPTSFNKSKRFGIEGRNRWPST 55 M + + I + ER N + L+ + + P++ + ++ + + Sbjct: 1 MNKL--EALGNKIRELRERKNWSLDRLSEELEKEDIDIVPSTLFRIEKGQRK-KIDTLLL 57 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + KIL + + + G GN + Sbjct: 58 LGLSKILNYNFFQMLDSQIFRS---------------EDYIEVDDQKLYIYGFASAGNGY 102 Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--NCGDRLL 172 +T + + K SM P + DILIL+ + ++++ Sbjct: 103 LDTTDYEIMEVSLPKNIRHKKGLFGIKVHGESMEPEFYNNDILILDPSCPEWEELNNKVI 162 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + + K+L L S N YP + +D I+ I +++ Sbjct: 163 VVDLNNERYVKLLKYYNDGRAYLFSYNEIYPPIQITENDNIKCIGKVV 210 >gi|104782730|ref|YP_609228.1| LexA repressor [Pseudomonas entomophila L48] gi|95111717|emb|CAK16441.1| transcriptional repressor for SOS response (signal peptidase of LexA family) [Pseudomonas entomophila L48] Length = 202 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E G G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGVE-----------AKVEDNGLPIIGRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AEQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQVVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ + Sbjct: 154 -GDEVTVKRFKR-EGSKVWLIAENPEFAPIEVDLKE 187 >gi|227495846|ref|ZP_03926157.1| repressor lexA [Actinomyces urogenitalis DSM 15434] gi|226834603|gb|EEH66986.1| repressor lexA [Actinomyces urogenitalis DSM 15434] Length = 269 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 27/223 (12%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESIFK 60 +++EA+ + H PS + + GL S +K +R G+ R P + Sbjct: 57 EVYEAVRQAVLSHGYPPSMREIGSQVGLTSPSSVKHQLDKLERIGLI--RRDPRLPRALE 114 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ P + + + + S + + + + Sbjct: 115 VIEPETTPPSTAEPQPQLPVLPGVAEGEAVAVPLV----GRIAAGSPILAEQEVDDVMAL 170 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK---PR 176 P + + + SM GD +++ S + GD + Sbjct: 171 PRRLTG-------DGKLFMLEVHGDSMIEAAICDGDWVVVRSQPDASNGDIVAAMLEDVD 223 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL R L+ N Y + + +++ Sbjct: 224 GASATVKVLSRR-DGHQWLLPRNPDYAPI--PGDEATIMGKVV 263 >gi|87201027|ref|YP_498284.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] gi|87136708|gb|ABD27450.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 72/225 (32%), Gaps = 31/225 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + +R LT LA + G++ + + +R R P E +F++ Sbjct: 18 LERLAALRKRKGLTQVDLAERMGVEQPTIQRWERGQ-----REPKFEQLFRLAEILGVDA 72 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL + + +G + + + Sbjct: 73 SALLSKD-----VAVPLGPTLYVKGDVQAGLWRTAIEHPAS-----DWIAF----TGRAD 118 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLI----KPRTGDIVA 182 + A + SM +Y +G IL S + + G R+++ + Sbjct: 119 VSADLEHRFGLRVVGDSMDQVYPEGTILECISLFGRAEASPGKRVIVIRTDIHGDSEATV 178 Query: 183 KVLISRRGR-SIDLMSLNCCYPVDTVEMSD---IE-WIARILWAS 222 K L+ + G + S N + + + +E IA I+ AS Sbjct: 179 KELVEQNGELWLVPRSSNPAHMPIKLNSQEPGIVETRIAAIVVAS 223 >gi|86131349|ref|ZP_01049947.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134] gi|85817794|gb|EAQ38962.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134] Length = 256 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 16/217 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + E H+ T + A K G+ ++ +R + S + I ++L Sbjct: 11 RRFKEVREDHDFTQAEFAEKLGIKNST-ADIERGRTK-----LSGQVITELLRLFQINPL 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + +K + ++ + + Sbjct: 65 WIYGYSKQKHLNPDKGDISPKVV-IVDKEDNENMVLVNQKAAAGYPNNIADVEWYQNLPA 123 Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVA 182 + + + SMLP +R D ++ +++ +++ + +V Sbjct: 124 FDFPIPQYRNATYRGFQVEGDSMLPNFRPEDWVLAKGVESLEYASDNKVYVIVMQDAVVV 183 Query: 183 KVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L + L+S N Y V +SDI+ I ++ Sbjct: 184 KKLQKLPDSSRVLLISSNEDYAPYEVAVSDIQEIWQV 220 >gi|325527217|gb|EGD04603.1| LexA repressor [Burkholderia sp. TJI49] Length = 215 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I L T L G G+ Sbjct: 54 GVIELAAGASRGIRLLGIDDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L+ R G ++L++ N Y V+ Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195 >gi|147673224|ref|YP_001216598.1| prophage MuSo2, Cro/CI family transcriptional regulator [Vibrio cholerae O395] gi|147673724|ref|YP_001216739.1| prophage MuSo2, Cro/CI family transcriptional regulator [Vibrio cholerae O395] gi|262170246|ref|ZP_06037934.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae RC27] gi|146315107|gb|ABQ19646.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio cholerae O395] gi|146315607|gb|ABQ20146.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio cholerae O395] gi|227012945|gb|ACP09155.1| transcriptional regulator,Cro/CI family [Vibrio cholerae O395] gi|227013085|gb|ACP09295.1| transcriptional regulator,Cro/CI family [Vibrio cholerae O395] gi|262021415|gb|EEY40128.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae RC27] Length = 245 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 14/219 (6%) Query: 9 IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I +R+ E ++ A+K GL G +PS + + I +N+ Sbjct: 25 IMRFPERLKEAIGDISIRSFAKKCGLSEAVVRNYL-----GGKTFPSLDKLALISEISNK 79 Query: 68 TICQLLDLPFSDGRTTEKKE----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + L +D +E + P G N T + Sbjct: 80 PLEWLCSGATTDYSVSEPSAFYSIPMDEFVMIPGYRIQVSAGHGALNPENMEPTRYLAFR 139 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 R N + + SM P D L+++ A + I ++ K Sbjct: 140 RKWLNYRGFNEKDLAIVWAKGDSMEPTIHNNDTLVVHMARNKPQDGHIYIFRNGDELFVK 199 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 S + L+S N Y + + + + +++ Sbjct: 200 RYQSML-GTWRLISDNPIYDKLDIPKHEQHQFDVVGQVV 237 >gi|331007082|ref|ZP_08330306.1| SOS-response transcriptional repressor [gamma proteobacterium IMCC1989] gi|330419099|gb|EGG93541.1| SOS-response transcriptional repressor [gamma proteobacterium IMCC1989] Length = 204 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 25/211 (11%), Positives = 61/211 (28%), Gaps = 23/211 (10%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 + L + + G+ ++ + ++ KIL + + P Sbjct: 1 MKTLGLKGVDITKATGVSSGGVSQWVNGIT--KPNGAKLLALSKILQCQPDWLLYGKGDP 58 Query: 77 FSDGRTTEKK---EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + + +P++ + +G P G+ + Sbjct: 59 KEYDTPSVVPISIQNRVPVISWVQAGEWTAIVDHFQP-GDADEWQETTA---------KV 108 Query: 134 QTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLIS 187 + Q SM P +G I+I++ V+ G ++ + + + K L+ Sbjct: 109 GSNAFALHVQGDSMVNPSGSPSIPEGSIVIVDPDTVVDNGKIVVARLEESSEATLKKLVI 168 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN Y + + + + Sbjct: 169 DGPHRY-LKPLNPDYRPIQINGN-CTIVGVV 197 >gi|167836726|ref|ZP_02463609.1| LexA repressor [Burkholderia thailandensis MSMB43] Length = 215 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I R ER P + +A + G E R + + Sbjct: 1 MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A L G G+ Sbjct: 54 GVIELAAG----------ASRGIRLLGIDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L R G I+L++ N Y V+ Sbjct: 163 LGDDVTVKRLKRRPGG-IELIAENPDYENIFVKA 195 >gi|324995252|gb|EGC27164.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] Length = 225 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 -----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + T+ L P + + + S + S G + Sbjct: 57 QENYFVDETSTLYTYPLLTPSHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|66047096|ref|YP_236937.1| peptidase [Pseudomonas syringae pv. syringae B728a] gi|63257803|gb|AAY38899.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] gi|330970986|gb|EGH71052.1| peptidase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 218 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI L +A + G+ ++ + + E+++ + Sbjct: 1 MTRQERIARAIAA----SGLKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121 AT L + L P S + G+ V P Sbjct: 53 RATGFRAEWLAIGEGPEKAPAFD---ANVALIDQPDMSFRYPVISWVSAGSWEEAVQPYP 109 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209 >gi|76808544|ref|YP_333047.1| repressor protein [Burkholderia pseudomallei 1710b] gi|76577997|gb|ABA47472.1| repressor protein, putative [Burkholderia pseudomallei 1710b] Length = 289 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 67/215 (31%), Gaps = 19/215 (8%) Query: 14 DRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 DR+ E TP S +K DP R + P +++ I A ++ Sbjct: 85 DRLRELTGETPLSTTLKKIDADPNWAKPYARGNL------PGMDALVAIADAYGKS---- 134 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + F + + + R Sbjct: 135 ---VDWLIGREDSTPTLARIHGSDGKQAQEFAYIKRYAARDGDPEITFAFRRRWIKDYLK 191 Query: 133 IQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + + + +D M P +++ D ++++ Q G+ L IV + Sbjct: 192 AEVSNLAVVRIEDDLMAPTFQRRDNVLVDMGYQHKPGNGLYALRLEDSIVVRRTQKLSSG 251 Query: 192 SIDLMSLNCCYPVDTVEMS----DIEWIARILWAS 222 + ++ N YP D + D E + +++W S Sbjct: 252 KLRILCENENYPPDEIRPDENEFDFEIVGKVVWFS 286 >gi|57239512|ref|YP_180648.1| hypothetical protein Erum7850 [Ehrlichia ruminantium str. Welgevonden] gi|58579494|ref|YP_197706.1| hypothetical protein ERWE_CDS_08300 [Ehrlichia ruminantium str. Welgevonden] gi|58617547|ref|YP_196746.1| hypothetical protein ERGA_CDS_08200 [Ehrlichia ruminantium str. Gardel] gi|57161591|emb|CAH58519.1| hypothetical protein Erum7850 [Ehrlichia ruminantium str. Welgevonden] gi|58417159|emb|CAI28272.1| Hypothetical protein ERGA_CDS_08200 [Ehrlichia ruminantium str. Gardel] gi|58418120|emb|CAI27324.1| Hypothetical protein ERWE_CDS_08300 [Ehrlichia ruminantium str. Welgevonden] Length = 209 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 75/224 (33%), Gaps = 22/224 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S+ I + ++ + LA +A + + G++ P+++ + Sbjct: 1 MKT-SNSIIVTRMKHQMDKMGINARELANRAEVGKSFVYDIL----SGKSTNPTSKKLMA 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I N ++ L+ + L + +G+ + Sbjct: 56 IAKVLNVSLSYLISDDSYICGQGNTNILPVYNLELENGQ--------ISSSGDVNLYLSS 107 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 +P+ + + SM+P DI++++ + + L + + I Sbjct: 108 NINLTPNM------KDLRVYHVKGDSMIPTLMNQDIVLVDISDKSPHPAGLFVIVDSVGI 161 Query: 181 VAKVLISRRGR---SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + L + + ++S N Y + D+E + RI+W Sbjct: 162 SIRRLEYLKDSNKIKLHVVSDNKKYSSYECHLEDMEILGRIIWY 205 >gi|257440458|ref|ZP_05616213.1| LexA repressor [Faecalibacterium prausnitzii A2-165] gi|257197080|gb|EEU95364.1| LexA repressor [Faecalibacterium prausnitzii A2-165] Length = 206 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 29/224 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59 M+ S + + + L+ LA++ G +S K ++ + E Sbjct: 1 MSELSRRILQRRL-----ELGLSQEELAQRMGYRSKSSITKLEKGVNDIPQS--KVEEFA 53 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L T + + + E+ + S + G + N +G Sbjct: 54 AALETTPAWLMG--LENTAFVPPGFEPLPEMVRVPLVGSIACGSPIT---AEQNIECYIG 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 VP D +SM P GDI+ + +V G+ ++ + Sbjct: 109 VPAAWHA----------DFALTCHGSSMAPTICDGDIVCIRCQPEVEQGEIAAVRI-GDE 157 Query: 180 IVAKVLISRRGRSIDLMSLNCCY-PVDTV---EMSDIEWIARIL 219 K + G ++ L++ N P ++++I+ R + Sbjct: 158 ATLKHFHRQ-GDTVMLLADNAAVCPPMIYAGPQLNEIQIEGRAV 200 >gi|34497787|ref|NP_902002.1| SOS mutagenesis [Chromobacterium violaceum ATCC 12472] gi|34103643|gb|AAQ60004.1| SOS mutagenesis [Chromobacterium violaceum ATCC 12472] Length = 198 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 5/181 (2%) Query: 42 KRFGIEGRNRWPSTESIF-KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 KR G ++ + +++ ++ + Q LD S + + L S Sbjct: 12 KRSGAGRKSVFGGDKTVAVRVPEPLKPILQQWLDDYRSWRTANSAQAFDFRTLGAQLSEL 71 Query: 101 GGFFDSGVFPTGNKWNTVGV-PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 +G P G+ + + + + K + SM GD+L+ Sbjct: 72 SLPLFAGSVPAGSPVPADDLKETDIDLNTHLVSRPGDTFMVKVKGDSMQGAGIHDGDLLL 131 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + + G ++ G++ K L + L+ N Y V I + Sbjct: 132 VERSREPRSGKVVVAALN-GELTVKRLERGPAG-VRLLPENPAYQPIDVPEDSSFHIWGV 189 Query: 219 L 219 + Sbjct: 190 V 190 >gi|330981536|gb|EGH79639.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 218 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI L +A + G+ ++ + + E+++ + Sbjct: 1 MTRQERIARAIAA----SGLKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121 AT L + L P S + G+ V P Sbjct: 53 RATGFRAEWLAIGEGPEQAPAFD---ANVALIDQPKMSFRYPVISWVSAGSWEEAVQPYP 109 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209 >gi|322678754|gb|EFY74810.1| Repressor protein CII [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] Length = 250 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 19/224 (8%) Query: 6 HKKIWEA-IDRMAERH----NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 +K+I +A ++ + E +T + A P + ++ E NR + K Sbjct: 28 NKEIRKANLEALYEERKRSTGMTKAQFAELIDTSPAALSQLL---GENPNRNIGDKLARK 84 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I A + L L + P S + Sbjct: 85 IENALGLSFGWLDVLHSKENTGNVAFRGMNDTKGSYPVISWISAGQWMEAV----EPYHR 140 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR 176 I ++ + SM +G ++++ ++ G ++ K Sbjct: 141 RSIDRWYDTTVVCSEDSFWLDVKGDSMTSPVGLSIPEGAAILVDPEVEPRNGKLVVAKLD 200 Query: 177 -TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L+ GR L LN YP+ + + I ++ Sbjct: 201 GDNEATFKKLVIDAGRRF-LKPLNPQYPMQEINGN-CRIIGVVV 242 >gi|312963267|ref|ZP_07777751.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens WH6] gi|311282533|gb|EFQ61130.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens WH6] Length = 258 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 61/233 (26%), Gaps = 28/233 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRNRWPSTESIFKILAATNET 68 + + + +L+ S A+ G+ P N KR GR + + + Sbjct: 5 GDRLKALLREVHLSASDFAKNRGVTPQHVNNWFKRGVPMGR--------LNEFAELLCVS 56 Query: 69 ICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 L + L P P Sbjct: 57 SRWLRTGEGPKHPPANFLLEGSDTRKGLASTREGRGKYLTGPTCAPEKLDVEIPLHPTFT 116 Query: 125 SPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 S ++ + D SM+ + ++G L ++ + Sbjct: 117 STERIRVSLHTLQTLTVNPDRAVGAYMVDNSMIDIIQQGATLAIDRGRTQIIDGEIYAVE 176 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD-----IEWIARILWAS 222 G + K L +R G + + S N +P + + + + + W S Sbjct: 177 HDGMLRIKYLYNRPGGGLRMRSHNAGEHPDEYLTHEQRFEQNFQIVGWVFWWS 229 >gi|78066208|ref|YP_368977.1| LexA repressor [Burkholderia sp. 383] gi|170702568|ref|ZP_02893443.1| transcriptional repressor, LexA family [Burkholderia ambifaria IOP40-10] gi|172060567|ref|YP_001808219.1| LexA repressor [Burkholderia ambifaria MC40-6] gi|123742597|sp|Q39GT3|LEXA_BURS3 RecName: Full=LexA repressor gi|229621199|sp|B1YPM6|LEXA_BURA4 RecName: Full=LexA repressor gi|77966953|gb|ABB08333.1| SOS-response transcriptional repressor, LexA [Burkholderia sp. 383] gi|170132528|gb|EDT00981.1| transcriptional repressor, LexA family [Burkholderia ambifaria IOP40-10] gi|171993084|gb|ACB64003.1| transcriptional repressor, LexA family [Burkholderia ambifaria MC40-6] Length = 215 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I L T L G G+ Sbjct: 54 GVIELAAGASRGIRLLGIDDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L+ R G ++L++ N Y V+ Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195 >gi|107022673|ref|YP_621000.1| LexA repressor [Burkholderia cenocepacia AU 1054] gi|116689622|ref|YP_835245.1| LexA repressor [Burkholderia cenocepacia HI2424] gi|170732925|ref|YP_001764872.1| LexA repressor [Burkholderia cenocepacia MC0-3] gi|254245497|ref|ZP_04938818.1| SOS-response transcriptional repressor, LexA [Burkholderia cenocepacia PC184] gi|123245009|sp|Q1BWH8|LEXA_BURCA RecName: Full=LexA repressor gi|166224558|sp|A0K775|LEXA_BURCH RecName: Full=LexA repressor gi|229621200|sp|B1K0Z6|LEXA_BURCC RecName: Full=LexA repressor gi|105892862|gb|ABF76027.1| SOS-response transcriptional repressor, LexA [Burkholderia cenocepacia AU 1054] gi|116647711|gb|ABK08352.1| SOS-response transcriptional repressor, LexA [Burkholderia cenocepacia HI2424] gi|124870273|gb|EAY61989.1| SOS-response transcriptional repressor, LexA [Burkholderia cenocepacia PC184] gi|169816167|gb|ACA90750.1| transcriptional repressor, LexA family [Burkholderia cenocepacia MC0-3] Length = 215 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I L T L G G+ Sbjct: 54 GVIELAAGASRGIRLLGIDDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L+ R G ++L++ N Y V+ Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195 >gi|163754238|ref|ZP_02161361.1| transcriptional regulator [Kordia algicida OT-1] gi|161326452|gb|EDP97778.1| transcriptional regulator [Kordia algicida OT-1] Length = 255 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 57/216 (26%), Gaps = 17/216 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + + + A G + + E P + + + Sbjct: 3 NIQKNIKHLRSLKSFSQERFAETLGWSRSMVGSYEEGRSE-----PPIDRLIDLSDHFKL 57 Query: 68 T-----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGV 120 L + + P+ G + Sbjct: 58 PIDILVKNDLTQAKDTSFMQVGNQRLLFPITVDEDDNELIEIIPTKASAGYLAGYADPEY 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRT 177 E + + SMLP+ + G ++ ++ V G ++ + Sbjct: 118 IEQLEKIKLPFLPTGTHRAFPIKGDSMLPV-KDGSYIVAKFVDDINDVKDGRTYVVLTKN 176 Query: 178 GDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDI 212 +V K + G+ + L S N Y V++ D+ Sbjct: 177 DGLVYKRVSKHFTGQGLLLSSDNKAYAPFHVQLEDV 212 >gi|284006697|emb|CBA71956.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 237 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 66/226 (29%), Gaps = 19/226 (8%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I I + LT + +A+ G+ S K + + + + + K+ Sbjct: 14 YMKTSTSISNRIRDRRKELRLTQNEIAKALGVSRVSVTKWENG--DTKPDGENLHILTKV 71 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 LA E + D D + +G G+ P + Sbjct: 72 LACNIEWLLYGKDSRSEDDTKLYRLSSATFKRIPLLTGEQISKWDGITPFAEISDVTVWS 131 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML-----PLYRKGDILILNS---AIQVNCGD-RLL 172 E+ S + + SM P G ++++ I G ++ Sbjct: 132 EVMSD------VSANTFMMLVKGDSMANPHGSPSIPDGSKVLVDPDYGDIDDLNGKIIVI 185 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + K L L+ LN + + +E + R+ Sbjct: 186 QLEDSKEPTIKKLSIDGPNKY-LIPLNPSFKIIELEGN-YTIKGRV 229 >gi|224541898|ref|ZP_03682437.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] gi|224525132|gb|EEF94237.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 19/211 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ E+ + L G+ + + + E P + ++ + Sbjct: 6 GTNVKQLREKRGIDQKELGEIVGVSDKTVSSWEINRTE-----PKMGIVQQLADYFGVST 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L+ D + + +G F N + + VP + Sbjct: 61 DYLIKGNHDDAIYENVNIDYTRVPLY----DSICCGNGGFVDDNIIDMIPVPSKGLSKSA 116 Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 Y SM GD+LI +V+ G T K Sbjct: 117 KY------FAQYASGESMKDAGISDGDLLIFEKVNKVDDGVIGCFCTDTNTATCKKYKEL 170 Query: 189 RGRSIDLMSLNCCYPVDTVEM--SDIEWIAR 217 I L +N Y V+ S+I + + Sbjct: 171 -NGIIMLQPMNADYDPIVVDPLNSNIRCLGK 200 >gi|217980293|ref|YP_002364269.1| putative phage repressor [Shewanella baltica OS223] gi|217500930|gb|ACK48902.1| putative phage repressor [Shewanella baltica OS223] Length = 209 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 22/220 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + LT +A G+ + ++ + + P E + + Sbjct: 2 KLGDRLKNTRKIKGLTQLQIAEGVGVSKVAVSRWELGYSQ-----PKGEKLNALCNLLEI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 LL + + + SGS + +P Sbjct: 57 DSNWLLTGLKDECKNVAMIPFYSSVSIAAGSGSINEVT--------VEEKIAIP---LWV 105 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SMLP+ G I+ LN + + + + + K+LI Sbjct: 106 YNKQLNKKDVCCVRVSGKSMLPVLNDGSIIALNPHQKSIKDGMMYVIRQNDLLRVKILIE 165 Query: 188 RRGRSIDLMSLNCCY-----PVDTVEMSDIEWIARILWAS 222 + SI + S N + + +E+SD E I ++ W S Sbjct: 166 KP-SSIVIRSYNPDFEGEELSKEELELSDFEIIGQVFWYS 204 >gi|115351549|ref|YP_773388.1| LexA repressor [Burkholderia ambifaria AMMD] gi|171319115|ref|ZP_02908237.1| transcriptional repressor, LexA family [Burkholderia ambifaria MEX-5] gi|122323295|sp|Q0BFL9|LEXA_BURCM RecName: Full=LexA repressor gi|115281537|gb|ABI87054.1| SOS-response transcriptional repressor, LexA [Burkholderia ambifaria AMMD] gi|171095673|gb|EDT40631.1| transcriptional repressor, LexA family [Burkholderia ambifaria MEX-5] Length = 215 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + I L T L G G+ Sbjct: 54 GVIELAAGASRGIRLLGIEDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L+ R G ++L++ N Y V+ Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195 >gi|320161296|ref|YP_004174520.1| putative LexA repressor [Anaerolinea thermophila UNI-1] gi|319995149|dbj|BAJ63920.1| putative LexA repressor [Anaerolinea thermophila UNI-1] Length = 241 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 13/224 (5%) Query: 7 KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS---KRFGIEGRNRWPSTESIFKI 61 KKI + + + E+H PS + +D TS + R ++ Sbjct: 15 KKILDFLIKYQEKHGYPPSIREIGNHINVDSTSLVDYYLNQLQEAGFIERGGRISRSIRV 74 Query: 62 LAAT--NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L Q L+ + + IP++ + P + +TV Sbjct: 75 LRTLDGQVPFMQTLNTVKTAMERATHELLSIPVIGRIGASYPIPMPESDVPYFDSMSTVE 134 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY-RKGDILILNSAIQVNCGDRL-LIKPRT 177 V + P + + + + SM+ GDI+IL A N GD + + R Sbjct: 135 VAQSLLPKEKL----SDLFALEVEGDSMIDAMVNDGDIVILKRAEVANNGDMVAVWLTRD 190 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + K + R + L N +++ +++ Sbjct: 191 NETTLKYYYNERNGFVRLQPANRTMQPIIRPEKEVQVRGKVVLV 234 >gi|238765583|ref|ZP_04626492.1| hypothetical protein ykris0001_46340 [Yersinia kristensenii ATCC 33638] gi|238696200|gb|EEP89008.1| hypothetical protein ykris0001_46340 [Yersinia kristensenii ATCC 33638] Length = 231 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 70/231 (30%), Gaps = 22/231 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + ++ L LA K P + + + S E+ +I Sbjct: 3 RISERIKYLLKQEGLKQKDLAEKLHASPQTIHNWIKRDA------ISREAANQISETFGY 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG---------SGGFFDSGVFPTGNK---- 114 ++ LL + L P FF S G+ Sbjct: 57 SLDWLLKGDGEPKKKKTSDLHPEKLPISPWDSSTPLDDDEVEIPFFKSIELAAGHGCCMS 116 Query: 115 --WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 +N + +S A SM P+ G + ++ ++ + Sbjct: 117 EDYNGFKLRFSKSTIRRAGACAENVVAFSVHGGSMDPVIPNGATVTVDMGNKIIKDGAIY 176 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 + K+L G + + S N YP + ++ ++ I R++ S Sbjct: 177 AIEQDELYRLKLLYRLPGHRLSIRSYNRDEYPDEEADLKSVKIIGRVIHWS 227 >gi|88606714|ref|YP_505648.1| DNA-binding protein [Anaplasma phagocytophilum HZ] gi|88597777|gb|ABD43247.1| DNA-binding protein [Anaplasma phagocytophilum HZ] Length = 212 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 22/216 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ + LA KA + + G++ P+++ + I Sbjct: 11 VASRIRSQMDKIGVNARELAEKASVGKSFVYDIL----SGKSSNPTSKKLMAIAEVLQVP 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ I L ++ P + Sbjct: 67 LAYLVGSDDGLCEVASGGISPISYLEDEGVDGSIKYEKFYVPANT---KLPFHTEHLRFY 123 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + SM P DI++++ + +V + + I+ + L Sbjct: 124 D------------VKGDSMSPTLFGQDIVLVDISDKVAHPAGVFAIKDSIGILIRRLEYI 171 Query: 189 RG-RSIDL--MSLNCCYPVDTVEMSDIEWIARILWA 221 R I L + N Y + DIE + R++W Sbjct: 172 RDSSKIVLHVVCDNKKYSSYECAVEDIEILGRVIWY 207 >gi|189346772|ref|YP_001943301.1| XRE family transcriptional regulator [Chlorobium limicola DSM 245] gi|189340919|gb|ACD90322.1| transcriptional regulator, XRE family [Chlorobium limicola DSM 245] Length = 242 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 32/236 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI---------------------- 46 + + + + + L K G+ ++ + Sbjct: 7 LGQRVKALRDHFALRQDEFGIKIGISGNRVSEIENDKGGTTASVLMSLCREFPVNPEWML 66 Query: 47 EGRNRWPSTESIFKILA-ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 GR + E+ + + L +++ L P + Sbjct: 67 SGRGKMLKGEAETSLPEVDFGIRLNLLERQMRHVLHGGAERDTGEQLARVPLYIAAVPAG 126 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 + G + +P + K SM+ + GD L++ + + Sbjct: 127 TPDIAGGEVEEYLDMPSSWIRG------KKNIYALKVNGDSMIDIGIMHGDTLLVEATEK 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G ++I G++ K L G ++ L+ N Y + D + +L Sbjct: 181 AKHGQ-VVIASINGEVTVKTLSISVGGAVSLVPENPIYHPIAITPDMDFRILGTVL 235 >gi|148654603|ref|YP_001274808.1| SOS-response transcriptional repressor LexA [Roseiflexus sp. RS-1] gi|148566713|gb|ABQ88858.1| SOS-response transcriptional repressor, LexA [Roseiflexus sp. RS-1] Length = 243 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 21/218 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I+ + H PS + + TS +E + ++ Sbjct: 36 QRDILGFIEEFTQEHGYPPSIREIQDGLRISSTSVVAYNLRALESKG----------LID 85 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + + +PLL +G T + VP Sbjct: 86 RDGRVSRGIKIKNMTPMPLSRAQGGRVPLLGVITAGQPLPNPEDTSTT--AVEMIEVPVD 143 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDIV 181 +P + K + SM+ GDI+++ + G + + + Sbjct: 144 LAPPEKL----QNVYALKVRGHSMIDALIDDGDIVLMRYQETADNGQMVAVRIEDDNAVT 199 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + L N V+ + + R++ Sbjct: 200 LKRFYR-EGDKVRLQPANVTMEPIYVDAARVHIQGRVV 236 >gi|300704321|ref|YP_003745924.1| transcriptional lexa repressor [Ralstonia solanacearum CFBP2957] gi|299071985|emb|CBJ43315.1| transcriptional lexA repressor [Ralstonia solanacearum CFBP2957] Length = 216 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 23/216 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I + +R P + +A + G + + E Sbjct: 1 MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA R T L G G+ Sbjct: 45 EHLRALARKGVIELTPGASRGIRLRATGDASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + D K + SM GD+L + A + G ++ + Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRANEATNGKIVVAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + GR ++L++ N + V++ Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198 >gi|255972572|ref|ZP_05423158.1| predicted protein [Enterococcus faecalis T1] gi|256762720|ref|ZP_05503300.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|257422398|ref|ZP_05599388.1| predicted protein [Enterococcus faecalis X98] gi|255963590|gb|EET96066.1| predicted protein [Enterococcus faecalis T1] gi|256683971|gb|EEU23666.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|257164222|gb|EEU94182.1| predicted protein [Enterococcus faecalis X98] Length = 253 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 34/243 (13%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + N++ +A + G+ ++ + ++ IE +I KIL T E Sbjct: 13 NVGERMKLRRKELNISADKIANELGVSRSTIFRYEKGDIEKLPTE-RLITIAKILKTTPE 71 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN---------KWNTV 118 + + + + + T N T+ Sbjct: 72 ELMGWNTSNDFSSIEAIYNKLDTTRKQKVCRYAEHQLEEQKRNTSNNKVIAFMPTNTTTI 131 Query: 119 GVPEIRSPHNGIY-------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + S G + A D + SM P ++ G+I+ + + + Sbjct: 132 ELSGRLSAGGGAFNDKGCIEIVEVGSAPSQYDLAFQVCGDSMYPTFQDGEIVFVKETMDI 191 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVE-MSDIEWIA 216 G G+ K + G + L+SLN YP + + D+ I Sbjct: 192 YNGQIG-AIEINGEAFIKKMY-LEGTRLRLVSLNTELDEDGNRLYPDFYADELDDLYVIG 249 Query: 217 RIL 219 R++ Sbjct: 250 RVI 252 >gi|148263213|ref|YP_001229919.1| SOS-response transcriptional repressor, LexA [Geobacter uraniireducens Rf4] gi|189046537|sp|A5GAQ4|LEXA_GEOUR RecName: Full=LexA repressor gi|146396713|gb|ABQ25346.1| SOS-response transcriptional repressor, LexA [Geobacter uraniireducens Rf4] Length = 201 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 57/225 (25%), Gaps = 39/225 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + + I E H P+ + G++ T Sbjct: 1 MEKLTPRQQMVLAFISAHLESHGYPPTLREIGGHLGIN-------------------GTL 41 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K L A T ++ + GV G Sbjct: 42 GVMKHLDALERKGF-----------ITRNAGSSRGIVLVGAVAATSIPIVGVVRAGALQP 90 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + E + + + SM R GD+ ++ + GD ++ + Sbjct: 91 AIEDIEGYFAVDRALVKGADCFFLRVKGDSMIEAGIRSGDLALVRPQATADNGDIVVARI 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218 + K + I L N V + ++ I ++ Sbjct: 151 N-DEATLKRFFREKD-RIRLQPENSAMEPIIVKAKAGEVNIIGKV 193 >gi|315640888|ref|ZP_07895984.1| transcriptional repressor LexA [Enterococcus italicus DSM 15952] gi|315483306|gb|EFU73806.1| transcriptional repressor LexA [Enterococcus italicus DSM 15952] Length = 207 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 59/230 (25%), Gaps = 42/230 (18%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50 M + + + I + P+ + L TS ++ ++ G Sbjct: 1 MVKRTENRQLEVLRFIHQRVSEKGYPPTVREIGEAVQLSSTSTVHGHLSRLEKKGYI--L 58 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R P+ ++ T + E + P + Sbjct: 59 RDPTKPRAIEL--------------------TAKGLEAIDIVSDSIPLLGVVTAGEPILA 98 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 + +P + Q + SM+ GD +I+ GD Sbjct: 99 VEEAADFFPLPPDLTND------QGHLFMLTIKGESMINAGILDGDQVIVRKQDIAQNGD 152 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K + L N ++ ++ + R++ Sbjct: 153 IVIAMTDENEATCKTFYKEKN-YYRLQPENDFMDPIILQS--VKILGRVV 199 >gi|313896561|ref|ZP_07830110.1| repressor LexA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974746|gb|EFR40212.1| repressor LexA [Selenomonas sp. oral taxon 137 str. F0430] Length = 204 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 55/221 (24%), Gaps = 32/221 (14%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 ++ +I + I PS + GL +S ++ Sbjct: 7 STRRQSEILQYIKDFLVDKGYPPSVREIGTAVGLKSSS-------------------TVH 47 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + LA E D + + P + N Sbjct: 48 RYLAMLEENGAIRRDATKPRAIDIMGENPWGRTIPIP-LVGTVTAGEPILAEQNVEEIFS 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 P + Q SM+ + GD +++ N GD ++ Sbjct: 107 FPRALIGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALIDGE 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N +D++ + +++ Sbjct: 161 TATVKRFYREK-TCIRLQPENDSMEPFY--ETDVQIMGKVI 198 >gi|209560013|ref|YP_002286485.1| Repressor protein [Streptococcus phage NZ131.3] gi|209541214|gb|ACI61790.1| Repressor protein [Streptococcus phage NZ131.3] Length = 252 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 67/255 (26%), Gaps = 50/255 (19%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---------- 51 S +KKI I R E+ N+ P ++ ++ R Sbjct: 4 SLGNKKIMASNIRRHLEKKNMNPKEFSKAMNFKYSTVLDWVNAKTYPRIDKIELMANYFN 63 Query: 52 ----------WPSTESIFKILAAT--------NETICQLLDLPFSDGRTTEKKEKEIPLL 93 P S KI + + ++ Sbjct: 64 VEKSDLVEMYSPKIISATKINNKVALLDKKLKEPRHSDWIKHGENLLSEQNTVGNSKDIV 123 Query: 94 YFPPSGSGGF-FDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 P + + + G T+ +P D Sbjct: 124 EEPQATYYTYNYYDHAASAGTGQYLNDVQVETIELPVDYDA----------DFVIPVYGD 173 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 SM P Y GD + + ++++ GD + GD K L+ + L SLN Y Sbjct: 174 SMEPEYHSGDYVFIKLSVELADGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNSKYEDI 231 Query: 206 TVEMS-DIEWIARIL 219 V+ D I ++ Sbjct: 232 PVDRDSDFRIIGEVV 246 >gi|319942307|ref|ZP_08016622.1| hypothetical protein HMPREF9464_01841 [Sutterella wadsworthensis 3_1_45B] gi|319804180|gb|EFW01080.1| hypothetical protein HMPREF9464_01841 [Sutterella wadsworthensis 3_1_45B] Length = 232 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 21/216 (9%) Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 + T + LAR G+ ++ N+ + G ++ K+ + L Sbjct: 18 KSTGKTQAALARYCGVSTSAVNQWTKSGK------IFDSNLRKVAEFFGVSQRWLQTGEG 71 Query: 78 SDGRTTEKKEKEIPLLY-FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA---- 132 + F S + W + E + Sbjct: 72 EKTAQVLSYGVGDKIPDGFVAIPEYRLEFSAGSGSEPTWELIHDSEDCWYRESFFQKRHL 131 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG------DRLLIKPRTGDIVAKVLI 186 + +Q R K SM P + GD ++ S + G + + G+ K L Sbjct: 132 LPSQCKRAKVCGNSMEPELQNGDTILFESFTETRPGCVHISDGGIYVLTIDGEYRIKYLS 191 Query: 187 SRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 + + + S N Y + E ++ + R+L Sbjct: 192 KIKNG-LLVSSENSAYRPEEYVGDECDRLKILGRVL 226 >gi|296110377|ref|YP_003620758.1| transcription repressor of the SOS regulon [Leuconostoc kimchii IMSNU 11154] gi|295831908|gb|ADG39789.1| transcription repressor of the SOS regulon [Leuconostoc kimchii IMSNU 11154] Length = 213 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 57/220 (25%), Gaps = 28/220 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++ I + P+ + GL +S +R +G +++ + Sbjct: 9 KQLQVLRFIHEAQITNGYPPTVREVGEAVGLSSSSTIHGHIERLVKKGYLLKDASKPRAR 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T + IP+L +G+ + Sbjct: 69 AIEVT---------DSGLEALGVSTTPGRIPVLGLVTAGTPILAVE-----EEATEFFPI 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + SM+ + GD +I+ + GD ++ + Sbjct: 115 PDNLMQF------DGDMFMLNVRGNSMVNIGILDGDKVIVRKQDNADNGDVVVAMNDDNE 168 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 169 ATVKRFFR-EADHFRLQPENDAMSPIILR--RVSILGKVI 205 >gi|326575959|gb|EGE25882.1| peptidase S24-like protein [Moraxella catarrhalis CO72] Length = 233 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 69/229 (30%), Gaps = 16/229 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + + LT + + GL +++++ + + R +F + Sbjct: 2 ELKDRLKYARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAIELAHLFGV-DVHW 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WNTVG 119 + + + + L + F+ F G T Sbjct: 61 LISGEGEMTKNNYKLAPITEWDDSTPLDDDEA-EIPFYKDIAFACGYGAVNDDVTHETRK 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + + + +D SM+P + GD + ++ + R+ Sbjct: 120 LRMGKRTLSNLGVMPENAFAVTARDDSMMPYVQDGDTIYIDKGRKEVKDGRIFAIRFGEL 179 Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 + K L + ++S N +P + + E + + S Sbjct: 180 CLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVLGWVWSVS 228 >gi|323340828|ref|ZP_08081080.1| transcriptional repressor LexA [Lactobacillus ruminis ATCC 25644] gi|323091951|gb|EFZ34571.1| transcriptional repressor LexA [Lactobacillus ruminis ATCC 25644] Length = 209 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 19/217 (8%), Positives = 46/217 (21%), Gaps = 28/217 (12%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K+ I + P+ + + L TS + ++ Sbjct: 10 QIKVLRYIYDTVQEKGYPPTVREICKAVELSSTSTVH---------------GHLARLAK 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + E P P + + +P Sbjct: 55 RGYLKKDPTKPRAMEITPEGLEAIGETPKKTKIPVIGTVTAGAPILAVEETTEYFPLPPE 114 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + SM+ D +I+ + GD ++ + Sbjct: 115 -------FESADDLFMLTIRGESMINAGILNSDQVIVRKQNYADNGDIVIAMTEDNEATC 167 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + + +++ Sbjct: 168 KRFFKESD-HYRLQPENDTMAPIILNS--VSIVGKVI 201 >gi|253701101|ref|YP_003022290.1| SOS-response transcriptional repressor, LexA [Geobacter sp. M21] gi|259494475|sp|C6DZY8|LEXA_GEOSM RecName: Full=LexA repressor gi|251775951|gb|ACT18532.1| SOS-response transcriptional repressor, LexA [Geobacter sp. M21] Length = 201 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 39/226 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + I R E P+ +A K G+ T Sbjct: 1 MEQLTARQTEVLQIITRHLETCGYPPTLREIAAKLGIS-------------------GTL 41 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K L A + + G T + + L G + Sbjct: 42 GVMKHLEALEKKGYLRRQEGSTRGITLCNQNQATSLP-IVGVVRAGLLHPAIQDI----- 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + + SM+ +GD+ ++ + D ++ Sbjct: 96 -----EGHFAIDRSQLASGGAFFLRVKGDSMIHAHIVEGDLALVRPQPDASNRDIVV-AM 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE--MSDIEWIARIL 219 G+ K I L N Y ++ ++ + +++ Sbjct: 150 VEGEATLKRFYR-EADRIRLQPENPNYEPIIIQKGEQEVSIVGKVV 194 >gi|46579930|ref|YP_010738.1| transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46449346|gb|AAS95997.1| transcriptional regulator, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 224 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 17/216 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + + E+ +T S + + G P + N+ G + P + + + A Sbjct: 19 DSILAKVKDLVEQ-GMTYSAIGKMLGKSPATVNRWV-TTGVGGDSTPFVNML-QYMEALG 75 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +++ Y + S + G+ + Sbjct: 76 LKWGDIVENLE---------PAACGYGYVRKVQAKLGAGSSLITNGDLEGMYAFRQDFIN 126 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 G SM P G +++N + +++ K LI Sbjct: 127 EMGG--NPESLVMFDVIGASMEPTIPDGSTVLVNLRDTSIRSGLIYAVRVNDELLVKRLI 184 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS--DIEWIARILW 220 + + S N + ++ + E R+ W Sbjct: 185 -QEPGRLLCHSDNPTFGDTVIDGENPNFEVFGRVRW 219 >gi|120610369|ref|YP_970047.1| putative phage repressor [Acidovorax citrulli AAC00-1] gi|120588833|gb|ABM32273.1| putative phage repressor [Acidovorax citrulli AAC00-1] Length = 220 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 9/210 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + L+ L++ G+ ++ + ++R G P + A T Sbjct: 6 GSRLRAARNHAGLSQVELSKITGIAQSTISTAER-TGNGSADTPVYARACGVDAHWLATG 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + E + G W P + Sbjct: 65 EGQMLSQPATPTNATPYETTKVRPVYVVGRGNGGAMPERL-----WTDGDFPVGGTDECA 119 Query: 130 IYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 A + + + SM+P Y G+ ++ + D +L++ G + K L+SR Sbjct: 120 DVATNDPRAFLIRVEGPSMVPRYNPGEYALVEPDTEPEIEDDVLVRLVDGQTILKRLLSR 179 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 RG L S N V ++ W+ + Sbjct: 180 RGG-WRLGSYN-SMDVLFYSFEEVTWVYYV 207 >gi|160880675|ref|YP_001559643.1| LexA family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429341|gb|ABX42904.1| transcriptional repressor, LexA family [Clostridium phytofermentans ISDg] Length = 204 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 53/221 (23%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I + + P+ + L TS + + G R PS Sbjct: 9 KQQEILDYLKAQIISRGYPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPSKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ G G V Sbjct: 69 EIVD---------------------------GEFNLTRRELVNVPIVGTVTAGQPILAVE 101 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + P Y Q K + SM+ GD +++ GD ++ Sbjct: 102 NIDGYFPIPTEYMPNEQSFMLKVKGDSMINAGIFNGDQILVKKQTTAENGDFVVALID-D 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N V D++ + ++ Sbjct: 161 SVTVKTFYKEK-GYYRLQPENDFMEPIIV--EDVQILGIVI 198 >gi|39995152|ref|NP_951103.1| LexA repressor [Geobacter sulfurreducens PCA] gi|47605796|sp|P61608|LEXA1_GEOSL RecName: Full=LexA repressor 1 gi|39981914|gb|AAR33376.1| LexA repressor [Geobacter sulfurreducens PCA] Length = 201 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 56/226 (24%), Gaps = 39/226 (17%) Query: 1 MTSF--SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M +++ I + P+ +A + T Sbjct: 1 MQELAPRQQQVLAFITGFIAENGYPPTLREIAAHLKIS-------------------GTL 41 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K L A + S G + L G + Sbjct: 42 GVSKHLEALERKGYLRREANSSRGIALVGRTDTALSLPVAGVVRAGLPQP---AVEDIEE 98 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + ++ + + SM+ +GD+ ++ D ++ Sbjct: 99 YFAIDRSM--------VRGGTFFLRVKGDSMINAAIVEGDLALVRPQATAENRDIVVAMV 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEWIARIL 219 G+ K +R + I L N + D+ I +++ Sbjct: 151 D-GEATLKRFYRQRDQ-IRLQPENPNMDPIIIRPGEGDVAIIGKVV 194 >gi|171779398|ref|ZP_02920362.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282015|gb|EDT47446.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 228 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 58/222 (26%), Gaps = 20/222 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + L + LA++ G+ S+ ++ + P+ ++ K+ + Sbjct: 5 EKLKNRRLELGLKQTELAKELGISKQSYFAWEKGTAK-----PTKANLAKLEELLQVSHG 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP------------SGSGGFFDSGVFPTGNKWNTV 118 +L + + + L + F Sbjct: 60 YFSELEIATLYKQLTDQNQEKALTYVQDLLEQQRKVVTMVQEPRFAYKVYERLSAGIGAN 119 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 ++ D SM P Y G + ++ G + Sbjct: 120 VYDDMDYDTVYFDKDLAHDFASWIDGDSMEPTYHNGSVALIRETGFDYDG-AVYAVVWNS 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y S+ + +I+ Sbjct: 179 QTYIKKVYREENG-LRLVSINKDYDDKFAPYSENPRIVGKIV 219 >gi|160897372|ref|YP_001562954.1| peptidase S24/S26 domain-containing protein [Delftia acidovorans SPH-1] gi|160362956|gb|ABX34569.1| peptidase S24 and S26 domain protein [Delftia acidovorans SPH-1] Length = 215 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 69/216 (31%), Gaps = 12/216 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 WE + E LA + + K K G +F++ Sbjct: 6 WERLLPELEARGWKIQQLADAMKISYQAVRKVKEGGSFSSQNNIKAAKLFRL--NPAWLA 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + ++PL+ +G+ P G+ + P PH Sbjct: 64 TGVGPREMDGTDEDDDTLGKVPLISSVQAGNWSEIVDNFQP-GDASEWIPCPAKHGPHTF 122 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISR 188 ++ + + + P Y G+I+ ++ GDR++++ K + Sbjct: 123 ALTVEGESM----SNPGVHPSYEPGNIIFVDPGRSAQPGDRVVVRLEAQDQATFKQYLEE 178 Query: 189 RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL--WA 221 GR L ++N + +E++ D ++ W Sbjct: 179 DGRKF-LRAINPDWRPKFIEINGDATICGVVIGKWV 213 >gi|328953857|ref|YP_004371191.1| SOS-response transcriptional repressor, LexA [Desulfobacca acetoxidans DSM 11109] gi|328454181|gb|AEB10010.1| SOS-response transcriptional repressor, LexA [Desulfobacca acetoxidans DSM 11109] Length = 202 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 47/231 (20%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDP----TSFNKSKRFGIEGRNRW 52 M + + + + ++ ++ P+ +A G+ P + KR G +R Sbjct: 1 MKTLTSRQQAVLSFVEEFCQQQGYPPTVREVAAHFGIQPRAADDHLSALKRKGY--LHRE 58 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 P + ++ + P + + Sbjct: 59 PGRSRGLAL------------------------TGRQAESVVEVPILGQIAAGQPLLASE 94 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 +T+ +P + + SM PL GD++++ +V GD Sbjct: 95 QVEDTLPLPRSWVQGE-------EVFLLRVAGDSMAPLILPGDLVMVRVQPRVARGDIAA 147 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARIL 219 + + K + G + L N + + ++ + R++ Sbjct: 148 VLI-YEEATVKRVYEEAGG-LVLRGDNPNFAPLRFSPEEAAELVQILGRVV 196 >gi|257892444|ref|ZP_05672097.1| transcriptional repressor LexA [Enterococcus faecium 1,231,408] gi|257828823|gb|EEV55430.1| transcriptional repressor LexA [Enterococcus faecium 1,231,408] Length = 139 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 10/128 (7%) Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151 P + + + +P S + + SM+ Sbjct: 13 PTTIPVLGVVTAGEPILAVEDASDFFPIPPNLSSE------EGSLFMLTIRGDSMINAGI 66 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD +I+ GD ++ + K + L N + Sbjct: 67 LDGDNVIVRKQETAQNGDIVIAMTAEDEATCKRFYKEKN-FFRLQPENDLLEPIIL--DQ 123 Query: 212 IEWIARIL 219 + + R++ Sbjct: 124 VSILGRVV 131 >gi|330877543|gb|EGH11692.1| transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 243 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW + Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRSGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y G + + Sbjct: 65 GPKHPNESANENTGDDTRMAIQQTRNVLRGDVEIQIYMEVESPHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPLQVLQTMGI--DPKSCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 G + + L + L S N YP + D I + I W S Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSGEDIAREKIRILGWIFWWS 231 >gi|121634351|ref|YP_974596.1| putative transcriptional regulator [Neisseria meningitidis FAM18] gi|120866057|emb|CAM09795.1| putative transcriptional regulator [Neisseria meningitidis FAM18] gi|325131771|gb|EGC54472.1| putative transcriptional regulator [Neisseria meningitidis M6190] gi|325137661|gb|EGC60238.1| putative transcriptional regulator [Neisseria meningitidis ES14902] Length = 228 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 18 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAI---- 133 K+ G + + Sbjct: 73 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132 Query: 134 -QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N + D L + +++ K L G Sbjct: 133 NTKNLSVISVKGDSMEGVLNDGDSILVNHSENT-PRDGLYVLRINENLLVKRLQIVPGGI 191 Query: 193 IDLMSLNCCYPVDTV----EMSDIEWIARILW 220 I+++S N YP + D+E I R+ W Sbjct: 192 INVISANEAYPAFEINLNHPADDVEIIGRVEW 223 >gi|326569680|gb|EGE19732.1| peptidase S24-like protein [Moraxella catarrhalis BC1] Length = 234 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 65/225 (28%), Gaps = 16/225 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 +++ NL+ L+ K G++ + + + + R + + + L + Sbjct: 7 RLNQAMSAKNLSLRDLSEKTGINYEMIRRYSKG--QAKPRNDKMKLLAQCLGVPITWLDY 64 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNK-------WNTVGVPEI 123 + + + F F G T + Sbjct: 65 GEGEMTKNNYKLAPITEWDDSTPLDDDEAEIPFYKDIAFACGYGAVNDDVTHETRKLRMG 124 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + + + +D SM+P + GD + ++ + R+ + K Sbjct: 125 KRTLSNLGVMPENAFAVTARDDSMMPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCK 184 Query: 184 VLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 L + ++S N +P + + E + + S Sbjct: 185 RLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVLGWVWSVS 229 >gi|294668761|ref|ZP_06733854.1| prophage MuMc02, peptidase, family S24 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309278|gb|EFE50521.1| prophage MuMc02, peptidase, family S24 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 231 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 60/209 (28%), Gaps = 29/209 (13%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + + LAR + ++ E KI T ++ L+ Sbjct: 15 SDADLARFLEISTPVVAGYRKRETVP------LEQCIKIAERTGVSLDWLILGKGEMKGG 68 Query: 83 TEKKEKEIPLLYFPPSG-----------SGGFFDSGVFPTGNKWNT--------VGVPEI 123 + E++ ++ + + GN + + Sbjct: 69 SAAPERKKSVMEEVWAALEENRSPFPDVAFVPLFDAEVGAGNGIEVYGENIIQLIPFSQS 128 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 G+Y SM+P GDI+++N A GD + + + K Sbjct: 129 WLAAEGLYI--RDLACLPVNGDSMIPSLTSGDIVLVNHAK--RNGDGVFVVRMGNALRVK 184 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 L + + S N Y + + +++ Sbjct: 185 RLQWLANGDLRISSDNPIYQTEQITPAEL 213 >gi|312875029|ref|ZP_07735047.1| peptidase S24-like protein [Lactobacillus iners LEAF 2053A-b] gi|311089424|gb|EFQ47850.1| peptidase S24-like protein [Lactobacillus iners LEAF 2053A-b] Length = 229 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 21/231 (9%), Positives = 57/231 (24%), Gaps = 20/231 (8%) Query: 4 FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K+I+ + ++++ + L G + + + R E + Sbjct: 3 LGNKEIFSQNLKYYMYKYDVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60 Query: 63 AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGG----------FFDSGVF 109 + + D ++ + + + G Sbjct: 61 NIKKSDLVEKQTDKQIDILPVYNQLTDIRKHKVYSYAHQQLDEQNSNLNKKRSIYVVGTS 120 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 G + D + SM P I+ + + G+ Sbjct: 121 AAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGE 177 Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + K + I L S+N Y + + +++ Sbjct: 178 IGIFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 228 >gi|254261777|ref|ZP_04952831.1| putative repressor protein [Burkholderia pseudomallei 1710a] gi|254220466|gb|EET09850.1| putative repressor protein [Burkholderia pseudomallei 1710a] Length = 214 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 67/215 (31%), Gaps = 19/215 (8%) Query: 14 DRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 DR+ E TP S +K DP R + P +++ I A ++ Sbjct: 10 DRLRELTGETPLSTTLKKIDADPNWAKPYARGNL------PGMDALVAIADAYGKS---- 59 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + F + + + R Sbjct: 60 ---VDWLIGREDSTPTLARIHGSDGKQAQEFAYIKRYAARDGDPEITFAFRRRWIKDYLK 116 Query: 133 IQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + + + +D M P +++ D ++++ Q G+ L IV + Sbjct: 117 AEVSNLAVVRIEDDLMAPTFQRRDNVLVDMGYQHKPGNGLYALRLEDSIVVRRTQKLSSG 176 Query: 192 SIDLMSLNCCYPVDTVEMS----DIEWIARILWAS 222 + ++ N YP D + D E + +++W S Sbjct: 177 KLRILCENENYPPDEIRPDENEFDFEIVGKVVWFS 211 >gi|206895347|ref|YP_002247099.1| LexA repressor [Coprothermobacter proteolyticus DSM 5265] gi|206737964|gb|ACI17042.1| LexA repressor [Coprothermobacter proteolyticus DSM 5265] Length = 198 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 44/224 (19%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + K++ +AI +++ P+ L G+ R + E Sbjct: 7 MKELTARQKEVLDAIRTFIAQNHYPPTVRELCTILGISSP------RGVSK------HLE 54 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + + L P Sbjct: 55 ALEK-----------------KGYIKRTSGHRSLVLPMEVPLIGKVTAGLKTLAVEELEG 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + I+A K + SM +GD++I+NS + GD ++ Sbjct: 98 YLSM-------EDIFANP-NQFGLKVKGDSMQGAGILEGDVVIVNSDAEWINGDIIVAII 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + + L N Y + +++ + +++ Sbjct: 150 D-EMATVKRVKQDKYGNWWLEPDNPKYEPLPLN-EEVQIVGKVV 191 >gi|71738118|ref|YP_273650.1| repressor protein c2 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558671|gb|AAZ37882.1| repressor protein c2, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 308 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI + +A + G+ ++ + + E+++ + Sbjct: 91 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 142 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121 AT L E L P+ S + G+ V P Sbjct: 143 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 199 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 200 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 259 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 260 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 299 >gi|19745754|ref|NP_606890.1| repressor protein [Streptococcus pyogenes MGAS8232] gi|139474145|ref|YP_001128861.1| phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|306827718|ref|ZP_07460990.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] gi|19747895|gb|AAL97389.1| putative repressor protein [Streptococcus pyogenes MGAS8232] gi|134272392|emb|CAM30648.1| putative phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|304430036|gb|EFM33073.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] Length = 254 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 40/244 (16%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + LT LA + T+ ++ R P ++FK+ A + T Sbjct: 10 IGSKIKELRKNKGLTQKELAILVNMGDTTIANYEKGF-----RTPKKNTLFKLANALSVT 64 Query: 69 ICQLLDLPFSDGRTTE--------------------KKEKEIPLLYFPPSGSGGFFDSGV 108 I L +T+ ++ +L F + Sbjct: 65 IDDLFPPIKKSDKTSHELKIPTSPLVKKITTTVVELNVPRKQKVLDFATEQLKEQKNKIT 124 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDI 156 + ++ + Y D SM P Y G++ Sbjct: 125 SIEKKLYEYKVYEKLSAGTGYGYFGDGNYDTVFYDEELDYDFASWVFGDSMEPTYLNGEV 184 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWI 215 +++ G G K + + + L+SLN Y S+ I Sbjct: 185 VLIKQTGFDYEGGI-YAVEWDGQTYIKKVYREKDG-LRLVSLNKKYNDKFAPFSEGPRII 242 Query: 216 ARIL 219 I+ Sbjct: 243 GEIV 246 >gi|85059804|ref|YP_455506.1| putative transcriptional regulator [Sodalis glossinidius str. 'morsitans'] gi|84780324|dbj|BAE75101.1| putative transcriptional regulator [Sodalis glossinidius str. 'morsitans'] Length = 240 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 66/234 (28%), Gaps = 23/234 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + N T S LA+ G+ +S K + + ++ + Sbjct: 5 ERLKTAMREANCTQSTLAKAVGMAQSSVWKLTSGAAKSSTKVVEIARFLRVRPEWLASGI 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNK----- 114 + + + F + G+ Sbjct: 65 GEMHNSDVSNKHSISDITSTRQKISVWGDVENNYDFSDKFVEISLLNVKLSAGSGSCELN 124 Query: 115 -WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + + + + + + +SM P GDI+ +N + Sbjct: 125 EDSEFSIIFSKYSLHNMGVSPSAAKLVRVSGSSMEPALNNGDIVGINIDKTSIEDGKTYA 184 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222 + K LIS + + S N YP + + +++ I I ++ W+S Sbjct: 185 ICHDDVLRIKTLISAP-GKVVIRSFNREEYPDEVMSLNEFRECIRVIGQVFWSS 237 >gi|319945880|ref|ZP_08020130.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747945|gb|EFW00189.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] Length = 228 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 59/220 (26%), Gaps = 15/220 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + +T +A + G+ +++ +R + + + +IL Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVK--KPSKEKVKLLEQILDVPIGYFT 62 Query: 71 QLLDLPFSDGRTTEKK----------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L + + + E K ++ + + Sbjct: 63 ELEIVRLYNTLSDEGKNNALSYVRNLAQKKQCKNVVSMSKKLYEYHVYEKMSAGIGSSVY 122 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + D SM P Y+ G + ++ G + Sbjct: 123 NDQNYDTVYFDEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNSQT 181 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y + + + I+ Sbjct: 182 YIKRVYREEHG-LRLVSINPNYQDILLSYDEDPRIVGIIV 220 >gi|229553743|ref|ZP_04442468.1| repressor lexA [Lactobacillus rhamnosus LMS2-1] gi|258538901|ref|YP_003173400.1| LexA repressor [Lactobacillus rhamnosus Lc 705] gi|229312885|gb|EEN78858.1| repressor lexA [Lactobacillus rhamnosus LMS2-1] gi|257150577|emb|CAR89549.1| LexA repressor [Lactobacillus rhamnosus Lc 705] Length = 208 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 55/217 (25%), Gaps = 31/217 (14%) Query: 7 KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K+I + I E H P+ + + GL +S ++ L Sbjct: 11 KQILQTIYEAIEDHGYPPTVREIGKSVGLSSSS-------------------TVAAYLEK 51 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 L D E L F + G G G + + Sbjct: 52 LL-----AAGLIAKDPSKPRTIEVTTAGLDFIGVQAQGIPIVGTVAAGVPITAIENIDDY 106 Query: 125 SPHNGIYAIQTQ-DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P + Q +SM+ + GD +I+ G ++ + Sbjct: 107 FPVPDDLPYSADELFMLRVQGSSMIKIGILDGDQIIVKKQNDAENGQIVVAMTEEDEATV 166 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L N + + ++ Sbjct: 167 KRFYKEKHG-VRLHPENDDMDDMYFPS--VTILGIVV 200 >gi|325697038|gb|EGD38925.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] Length = 225 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSALYTYPLLTAPHKKEVDQLASRLLERQRKISSLTAYKVLSVELAAGLGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|293569808|ref|ZP_06680895.1| LexA repressor [Enterococcus faecium E1071] gi|291587556|gb|EFF19433.1| LexA repressor [Enterococcus faecium E1071] Length = 207 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIFK 60 ++ I + P+ + L TS R +G R P+ + Sbjct: 9 QIEVLRYIHEQVTQKGYPPTVREIGEAVQLSSTSTVHGHLARLEKKGFIQRDPTKPRAIE 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + EK P + + + + Sbjct: 69 LTKQ--------------------GLEKIGIRPTTIPVLGVVTAGEPILAVEDASDFFPI 108 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P S + + SM+ GD +I+ GD ++ + Sbjct: 109 PPNLSSE------EGSLFMLTIRGDSMINAGILDGDNVIVRKQETAQNGDIVIAMTAEDE 162 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N + + + R++ Sbjct: 163 ATCKRFYKEKN-FFRLQPENDLLEPIIL--DQVSILGRVV 199 >gi|290580238|ref|YP_003484630.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254997137|dbj|BAH87738.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 297 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 3/99 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E + I D SM PL+ GD++ + ++ G +++ + Sbjct: 200 EKQETIKYPIPIPEHDIALIVNGNSMEPLFYNGDVIFVKKTKAIHHGQIIVVIVN-NEAY 258 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 K L + + I L+SLN Y ++ D IE I ++ Sbjct: 259 VKKLYRK-NKEIRLISLNPDYDDIILKEDDTIEVIGTVI 296 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 44/162 (27%), Gaps = 6/162 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + R+ + S LA + +S N+ + P +I KI Sbjct: 15 KTISTNLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKS-----LPKIGNIQKIADYFG 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + S ++ + D + + T + Sbjct: 70 LQKSDIDPRFASKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDET 129 Query: 127 HNGIYAIQTQDT-RHKTQDTSMLPLYRKGDILILNSAIQVNC 167 A ++ T K D+ + I+ ++ I+ Sbjct: 130 TEDKVADKSNHTQYQKVVDSFIAKELNDQTIIHWDNVIKAKD 171 >gi|311234072|gb|ADP86926.1| putative phage repressor [Desulfovibrio vulgaris RCH1] Length = 217 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 17/216 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + + E+ +T S + + G P + N+ G + P + + + A Sbjct: 12 DSILAKVKDLVEQ-GMTYSAIGKMLGKSPATVNRWV-TTGVGGDSTPFVNML-QYMEALG 68 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +++ Y + S + G+ + Sbjct: 69 LKWGDIVENLE---------PAACGYGYVRKVQAKLGAGSSLITNGDLEGMYAFRQDFIN 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 G SM P G +++N + +++ K LI Sbjct: 120 EMGG--NPESLVMFDVIGASMEPTIPDGSTVLVNLRDTSIRSGLIYAVRVNDELLVKRLI 177 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS--DIEWIARILW 220 + + S N + ++ + E R+ W Sbjct: 178 -QEPGRLLCHSDNPTFGDTVIDGENPNFEVFGRVRW 212 >gi|163839489|ref|YP_001623894.1| LexA repressor [Renibacterium salmoninarum ATCC 33209] gi|162952965|gb|ABY22480.1| LexA repressor [Renibacterium salmoninarum ATCC 33209] Length = 287 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 64/224 (28%), Gaps = 11/224 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPSTES 57 + KKI E I R + PS + GL +S ++ + +G R P Sbjct: 62 TMRQKKILECIQRSISANGYPPSMREIGDVVGLASLSSVTHQLSQLEKQGYLRRDPKRPR 121 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN 116 ++L + D K + + + G G Sbjct: 122 AMEVLIPLTLESGSVDIEGLEDAEQLRSSAKGLNVAQLGSAQDTAMVPLVGRIAAGGPIL 181 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 V + P + K SM+ GD +++ + GD + Sbjct: 182 ADQVVDDVMPLPRQLVGHGELFMLKVAGDSMIDAAICDGDWVVVRRQNEAINGDIVAALL 241 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K +R L+ N Y + + + +++ Sbjct: 242 D-DESTVKTF-RQRDGHTWLLPQNTQYEPILGDYA--TIMGKVV 281 >gi|254302132|ref|ZP_04969490.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322324|gb|EDK87574.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 219 Score = 85.2 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 11/214 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + R+ +H + GLA+K L T +K ++ P +++ + + A Sbjct: 4 GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVVAVYPEE 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 ++L + E +KE + S G G + + P+ P Sbjct: 58 REILKKEYLKETLPEIFQKEEAIKIVSNSEVLNLPVYGKASAGRGYLNMDSPDYYMPILR 117 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SM P G+ +++ +++ + + K L + Sbjct: 118 GNF-SKKSFFVEITGNSMEPTLEDGEFALVDPENTTYSKNKIYVVTYNDEGYIKRLEMKD 176 Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + I L S N Y + + R++ Sbjct: 177 KLKVITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210 >gi|329116131|ref|ZP_08244848.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020] gi|326906536|gb|EGE53450.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020] Length = 230 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 68/230 (29%), Gaps = 21/230 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FS K+ + ++ ++H ++ L ++ G++ + + ++ + ++ I Sbjct: 1 MFSGKQ----LKKIRQQHKMSQEQLGQELGVNKMTISNWEKDKNSPNQKH--LNALVSIF 54 Query: 63 AATNETICQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ + T++ +E ++ P F Sbjct: 55 ETDQDYFNHYQEIIIPYKQLTKQNQSKVVTYSEKLLAQESKIITLPTKKKELFSYRVYES 114 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + D SM P Y G+++++ G Sbjct: 115 LSAGTGYSYFGDGNYDVVFYDEQMDYDFASWVFGDSMEPTYLNGEVVLIKQEGFDYDG-A 173 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G K + + L+SLN Y + I +I+ Sbjct: 174 IYAVEWDGQTYIKKVYREEEG-LRLVSLNKKYSDKFAPFDENPRIIGKII 222 >gi|301512537|ref|ZP_07237774.1| transcriptional regulator PrtR [Acinetobacter baumannii AB058] Length = 232 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 56/211 (26%), Gaps = 7/211 (3%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA- 63 +H + R+ E ++ A+ P + K+ G+ + Sbjct: 7 THPSVL----RLLEASGMSQEETAKAIDEFPQTITNWKKRGVSKAGALKAAAKFGVAANW 62 Query: 64 -ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T E + ++ T+ + SG T + Sbjct: 63 ILTGEGKKEESNITKVVEWDTDTPLDNDEVEIPFYKEVLVSCGSGSLAEMVGNETRKLRL 122 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ + SM P+ G + ++ ++ G Sbjct: 123 SKATLRQYGVDPSNAYALTAFGNSMSPVINNGATVYVDVGRTSIVDGKIYAINHGGLFKF 182 Query: 183 KVLISRRGRSIDLMSLNC-CYPVDTVEMSDI 212 K L + ++S N YP + + DI Sbjct: 183 KYLYRLPKGGVKIVSENKEEYPDEYLTAEDI 213 >gi|167581994|ref|ZP_02374868.1| LexA repressor [Burkholderia thailandensis TXDOH] gi|167620159|ref|ZP_02388790.1| LexA repressor [Burkholderia thailandensis Bt4] gi|257139231|ref|ZP_05587493.1| LexA repressor [Burkholderia thailandensis E264] gi|172046092|sp|Q2SVP7|LEXA_BURTA RecName: Full=LexA repressor Length = 215 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I R ER P + +A + G E R + + Sbjct: 1 MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A L G G+ Sbjct: 54 GVIELAAG----------ASRGIRLLGLDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRAEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L R G ++L++ N Y V+ Sbjct: 163 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 195 >gi|88657833|ref|YP_507799.1| DNA-binding protein [Ehrlichia chaffeensis str. Arkansas] gi|88599290|gb|ABD44759.1| DNA-binding protein [Ehrlichia chaffeensis str. Arkansas] Length = 203 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 67/216 (31%), Gaps = 21/216 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ + LA KA + + G++ P+++ + I N + Sbjct: 2 IVTRMRYQMDKMGINARELAHKADVGKSFVYDIL----SGKSTNPTSKKLMAIAKVLNVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + L + + + Sbjct: 58 LSYFISDDNYTYGQNNVNIMPVYDLELENGKV----------ASSGDVNLYLSSNI---- 103 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + + SM+P D+++++ ++ L + + + + L Sbjct: 104 NLTSNMKNLRVYYVKGDSMIPTLMNQDVVLVDIGDKIPHPAGLFVIVDSVGVSIRRLEYL 163 Query: 189 RGR---SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + + ++S N Y + D+E + RI+W Sbjct: 164 KDNQKIKLHVVSDNKKYSSYECHLEDMEILGRIIWY 199 >gi|76809814|ref|YP_333407.1| LexA repressor [Burkholderia pseudomallei 1710b] gi|76579267|gb|ABA48742.1| LexA repressor [Burkholderia pseudomallei 1710b] Length = 235 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I R ER P + +A + G E R + + Sbjct: 21 MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 73 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A L G G+ Sbjct: 74 GVIELAAG----------ASRGIRLLGIDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 123 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 124 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 182 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L R G ++L++ N Y V+ Sbjct: 183 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 215 >gi|296117066|ref|ZP_06835664.1| phage transcriptional regulator and peptidase [Gluconacetobacter hansenii ATCC 23769] gi|295976402|gb|EFG83182.1| phage transcriptional regulator and peptidase [Gluconacetobacter hansenii ATCC 23769] Length = 260 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 80/239 (33%), Gaps = 28/239 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDP--TSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + ER + LA+ G+ +S++ + + + +L+ Sbjct: 16 VSARLKALRERAGYSVRALAQDLGMGNKFSSYSFYEHKLKKDYLPVDLVRRLVPLLSERG 75 Query: 67 ETIC----------------------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + + + R + P +GSG Sbjct: 76 DPPIAANEVWALSGVIPGGSDLNEGIERAARAQAPRRNADGTVTINEYDIAPHAGSGAIV 135 Query: 105 DSGVFPTGNKWNTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 G +V R+ + + + SM P + G+ +++++A Sbjct: 136 GETDSGAGEGHASVAAWHMPRAFVENYVSDPSALVILRVSGNSMEPDFMAGERVMVDTAH 195 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +V D + + +V K L+ I ++S+N YP+D V+++D+ R++ Sbjct: 196 RVPSPDGVYVLWNGLGVVLKQLMLVPHSNPPRIRIISINPTYPMDEVDIADLVINGRVV 254 >gi|83719273|ref|YP_443002.1| LexA repressor [Burkholderia thailandensis E264] gi|83653098|gb|ABC37161.1| LexA repressor [Burkholderia thailandensis E264] Length = 235 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I R ER P + +A + G E R + + Sbjct: 21 MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 73 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A L G G+ Sbjct: 74 GVIELAAG----------ASRGIRLLGLDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 123 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 124 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRAEAKDGQIIVAR- 182 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L R G ++L++ N Y V+ Sbjct: 183 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 215 >gi|54027192|ref|YP_121434.1| LexA repressor [Nocardia farcinica IFM 10152] gi|71658804|sp|Q5YP21|LEXA1_NOCFA RecName: Full=LexA repressor 1 gi|54018700|dbj|BAD60070.1| putative LexA homolog [Nocardia farcinica IFM 10152] Length = 216 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 29/218 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I E I H PS + GL +S + R E Sbjct: 18 QRRILEVIRDWVVEHGYAPSTRQIGAAVGLRSMSSVARHLRSLEE--------------R 63 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + P + + + + + +P Sbjct: 64 GFLRRGEGVARPIDVRLFLHGTAAAAPSEDAVTVPVVGDIAAGAPILAEEHTDDLLTLPR 123 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + SM+ GD +++ S + N GD + + Sbjct: 124 ELVG-------RGTVFALRVRGDSMIDAAICDGDTVVVRSQREANSGDIV-AAMIGEEAT 175 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KV R + L N Y ++ + + +++ Sbjct: 176 VKVFRRR-NGHVLLEPRNPAYD--VIDGDEAVILGKVV 210 >gi|53719453|ref|YP_108439.1| LexA repressor [Burkholderia pseudomallei K96243] gi|53723456|ref|YP_102890.1| LexA repressor [Burkholderia mallei ATCC 23344] gi|67640002|ref|ZP_00438825.1| repressor LexA [Burkholderia mallei GB8 horse 4] gi|121601271|ref|YP_993025.1| LexA repressor [Burkholderia mallei SAVP1] gi|124385072|ref|YP_001026358.1| LexA repressor [Burkholderia mallei NCTC 10229] gi|126440686|ref|YP_001058880.1| LexA repressor [Burkholderia pseudomallei 668] gi|126448526|ref|YP_001080368.1| LexA repressor [Burkholderia mallei NCTC 10247] gi|126454981|ref|YP_001066124.1| LexA repressor [Burkholderia pseudomallei 1106a] gi|134282250|ref|ZP_01768955.1| LexA repressor [Burkholderia pseudomallei 305] gi|167003649|ref|ZP_02269435.1| repressor LexA [Burkholderia mallei PRL-20] gi|167719715|ref|ZP_02402951.1| LexA repressor [Burkholderia pseudomallei DM98] gi|167738708|ref|ZP_02411482.1| LexA repressor [Burkholderia pseudomallei 14] gi|167815931|ref|ZP_02447611.1| LexA repressor [Burkholderia pseudomallei 91] gi|167824304|ref|ZP_02455775.1| LexA repressor [Burkholderia pseudomallei 9] gi|167845848|ref|ZP_02471356.1| LexA repressor [Burkholderia pseudomallei B7210] gi|167894417|ref|ZP_02481819.1| LexA repressor [Burkholderia pseudomallei 7894] gi|167902819|ref|ZP_02490024.1| LexA repressor [Burkholderia pseudomallei NCTC 13177] gi|167911064|ref|ZP_02498155.1| LexA repressor [Burkholderia pseudomallei 112] gi|167919084|ref|ZP_02506175.1| LexA repressor [Burkholderia pseudomallei BCC215] gi|217423732|ref|ZP_03455233.1| LexA repressor [Burkholderia pseudomallei 576] gi|226196418|ref|ZP_03792000.1| repressor LexA [Burkholderia pseudomallei Pakistan 9] gi|237812136|ref|YP_002896587.1| LexA repressor [Burkholderia pseudomallei MSHR346] gi|242314191|ref|ZP_04813207.1| repressor LexA [Burkholderia pseudomallei 1106b] gi|254177615|ref|ZP_04884270.1| LexA repressor [Burkholderia mallei ATCC 10399] gi|254179897|ref|ZP_04886496.1| LexA repressor [Burkholderia pseudomallei 1655] gi|254188699|ref|ZP_04895210.1| LexA repressor [Burkholderia pseudomallei Pasteur 52237] gi|254198417|ref|ZP_04904839.1| LexA repressor [Burkholderia pseudomallei S13] gi|254199831|ref|ZP_04906197.1| LexA repressor [Burkholderia mallei FMH] gi|254206156|ref|ZP_04912508.1| LexA repressor [Burkholderia mallei JHU] gi|254261809|ref|ZP_04952863.1| repressor LexA [Burkholderia pseudomallei 1710a] gi|254297733|ref|ZP_04965186.1| LexA repressor [Burkholderia pseudomallei 406e] gi|254358557|ref|ZP_04974830.1| LexA repressor [Burkholderia mallei 2002721280] gi|71658810|sp|Q62K79|LEXA_BURMA RecName: Full=LexA repressor gi|71658811|sp|Q63TX7|LEXA_BURPS RecName: Full=LexA repressor gi|166224559|sp|A3MJD2|LEXA_BURM7 RecName: Full=LexA repressor gi|166224560|sp|A2S339|LEXA_BURM9 RecName: Full=LexA repressor gi|166224561|sp|A1V472|LEXA_BURMS RecName: Full=LexA repressor gi|166224562|sp|A3NUV3|LEXA_BURP0 RecName: Full=LexA repressor gi|166224563|sp|A3N959|LEXA_BURP6 RecName: Full=LexA repressor gi|172046645|sp|Q3JSP6|LEXA_BURP1 RecName: Full=LexA repressor gi|52209867|emb|CAH35839.1| LexA repressor [Burkholderia pseudomallei K96243] gi|52426879|gb|AAU47472.1| lexA repressor [Burkholderia mallei ATCC 23344] gi|121230081|gb|ABM52599.1| lexA repressor [Burkholderia mallei SAVP1] gi|124293092|gb|ABN02361.1| repressor LexA [Burkholderia mallei NCTC 10229] gi|126220179|gb|ABN83685.1| repressor LexA [Burkholderia pseudomallei 668] gi|126228623|gb|ABN92163.1| LexA repressor [Burkholderia pseudomallei 1106a] gi|126241396|gb|ABO04489.1| repressor LexA [Burkholderia mallei NCTC 10247] gi|134246288|gb|EBA46377.1| LexA repressor [Burkholderia pseudomallei 305] gi|147749427|gb|EDK56501.1| LexA repressor [Burkholderia mallei FMH] gi|147753599|gb|EDK60664.1| LexA repressor [Burkholderia mallei JHU] gi|148027684|gb|EDK85705.1| LexA repressor [Burkholderia mallei 2002721280] gi|157807305|gb|EDO84475.1| LexA repressor [Burkholderia pseudomallei 406e] gi|157936378|gb|EDO92048.1| LexA repressor [Burkholderia pseudomallei Pasteur 52237] gi|160698654|gb|EDP88624.1| LexA repressor [Burkholderia mallei ATCC 10399] gi|169655158|gb|EDS87851.1| LexA repressor [Burkholderia pseudomallei S13] gi|184210437|gb|EDU07480.1| LexA repressor [Burkholderia pseudomallei 1655] gi|217393590|gb|EEC33611.1| LexA repressor [Burkholderia pseudomallei 576] gi|225931635|gb|EEH27640.1| repressor LexA [Burkholderia pseudomallei Pakistan 9] gi|237506802|gb|ACQ99120.1| LexA repressor [Burkholderia pseudomallei MSHR346] gi|238520634|gb|EEP84092.1| repressor LexA [Burkholderia mallei GB8 horse 4] gi|242137430|gb|EES23832.1| repressor LexA [Burkholderia pseudomallei 1106b] gi|243060832|gb|EES43018.1| repressor LexA [Burkholderia mallei PRL-20] gi|254220498|gb|EET09882.1| repressor LexA [Burkholderia pseudomallei 1710a] Length = 215 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I R ER P + +A + G E R + + Sbjct: 1 MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A L G G+ Sbjct: 54 GVIELAAG----------ASRGIRLLGIDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L R G ++L++ N Y V+ Sbjct: 163 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 195 >gi|332873645|ref|ZP_08441590.1| putative HTH-type transcriptional regulator PrtR [Acinetobacter baumannii 6014059] gi|332738164|gb|EGJ69046.1| putative HTH-type transcriptional regulator PrtR [Acinetobacter baumannii 6014059] Length = 239 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 56/211 (26%), Gaps = 7/211 (3%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA- 63 +H + R+ E ++ A+ P + K+ G+ + Sbjct: 14 THPSVL----RLLEASGMSQEETAKAIDEFPQTITNWKKRGVSKAGALKAAAKFGVAANW 69 Query: 64 -ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T E + ++ T+ + SG T + Sbjct: 70 ILTGEGKKEESNITKVVEWDTDTPLDNDEVEIPFYKEVLVSCGSGSLAEMVGNETRKLRL 129 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ + SM P+ G + ++ ++ G Sbjct: 130 SKATLRQYGVDPSNAYALTAFGNSMSPVINNGATVYVDVGRTSIVDGKIYAINHGGLFKF 189 Query: 183 KVLISRRGRSIDLMSLNC-CYPVDTVEMSDI 212 K L + ++S N YP + + DI Sbjct: 190 KYLYRLPKGGVKIVSENKEEYPDEYLTAEDI 220 >gi|303241526|ref|ZP_07328027.1| transcriptional repressor, LexA family [Acetivibrio cellulolyticus CD2] gi|302590944|gb|EFL60691.1| transcriptional repressor, LexA family [Acetivibrio cellulolyticus CD2] Length = 211 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 57/220 (25%), Gaps = 27/220 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK-- 60 +KI + ++ + PS + G TS S E + K Sbjct: 8 KQQKILDFLNEQVKLKGYPPSVREICAAVGFKSTSTVHS------------YLEKLEKEG 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L + K+ + P + N +T + Sbjct: 56 LIQKDATKPRALKIVRNDADEKKSKEVYSRREMVDVPIIGKVTAGQPILAVENIEDTFPL 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + Q SM D +++ GD ++ + Sbjct: 116 PLD-------FVQGSTAFMLRVQGESMIEAGIFDKDFILVKQQSTATNGDIVVALI-GDE 167 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N V ++ + +++ Sbjct: 168 ATVKTFYK-ENGYVRLQPENKYLEPIIV-RDNLSILGKVI 205 >gi|121587531|ref|ZP_01677298.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio cholerae 2740-80] gi|254225718|ref|ZP_04919324.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio cholerae V51] gi|121548262|gb|EAX58330.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio cholerae 2740-80] gi|125621726|gb|EAZ50054.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio cholerae V51] Length = 245 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 14/219 (6%) Query: 9 IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I +R+ E ++ A+K GL G +PS + + I +N+ Sbjct: 25 IMRFPERLKEAIGDISIRSFAKKCGLSEAVVRNYL-----GGKTFPSLDKLALISEISNK 79 Query: 68 TICQLLDLPFSDGRTTEKKE----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + L +D +E + P G N T + Sbjct: 80 PLEWLCSGATTDYSVSEPSAFYSIPMDEFVMIPGYRIQVSAGHGALNPENMEPTRYLAFR 139 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 R N + + SM P D L+++ A + I ++ K Sbjct: 140 RKWLNYRGFNEKDLAIVWAKGDSMEPTIHNNDTLVVHMARNKPQDGHIYIFRNGDELFVK 199 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 S + L+S N Y + + + + +++ Sbjct: 200 RYQSML-GTWRLISDNAFYSPVDIPKQEQHQFDVVGQVV 237 >gi|118586847|ref|ZP_01544281.1| transcriptional regulator LexA [Oenococcus oeni ATCC BAA-1163] gi|290890480|ref|ZP_06553555.1| hypothetical protein AWRIB429_0945 [Oenococcus oeni AWRIB429] gi|118432679|gb|EAV39411.1| transcriptional regulator LexA [Oenococcus oeni ATCC BAA-1163] gi|290479876|gb|EFD88525.1| hypothetical protein AWRIB429_0945 [Oenococcus oeni AWRIB429] Length = 212 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 62/234 (26%), Gaps = 45/234 (19%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGI--EGRNR 51 M I I P+ + GL TS ++ ++ G+ + + Sbjct: 1 MAETKQLGILRFIYEKQNEKGYPPTVREIGEAVGLSSTSTVHGHIDRLEKHGLLHKDPTK 60 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + E K L A + ++P++ +G Sbjct: 61 PRAIEITEKGLRALGVP----------------ETPGKVPIIGLVTAGMPILAVEQ---- 100 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + +P + TSM+ + GD++ + + GD Sbjct: 101 -AATEFLPIPSDLERF------DGDLFVLRVSGTSMINIGILDGDMVFVRKQDYADNGDI 153 Query: 171 LLIKPRT-----GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ G+ K L N V ++ + +++ Sbjct: 154 VVAMTTDFGNGEGEATVKRFFKESN-HYRLQPENDTMAPIIV--ENVSILGKVV 204 >gi|218960459|ref|YP_001740234.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans] gi|167729116|emb|CAO80027.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans] Length = 240 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 33/235 (14%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ + + LA+ ++P++ ++ + PS E++ +++ N Sbjct: 2 IGERLKQIRQVLGIKQVDLAKVLKINPSAISQMESGRTN-----PSLETLSELVVNYNVN 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEI--- 123 + L+ T + + V + +TV +P Sbjct: 57 LHWLITGIGKMFNTANDTSSQNGSWDNFQKLLNDRLEEIVQAHLDLMDSDTVEIPVSGEI 116 Query: 124 ----------------RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 + I + SM P R D++++ + Sbjct: 117 AAGEPMENYGTLLDVVTVRRSLINGSLNNFVALRVNGRSMEPDIRNQDVVLIRYCNEWRE 176 Query: 168 --GDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMS---DIEWIA 216 G ++ G I K LI + I L+S+N Y ++ D+ I Sbjct: 177 LAGKICAVRID-GGITLKRLILDDVQKMIVLLSINENYQPILIDPDSHTDVTLIG 230 >gi|50955203|ref|YP_062491.1| SOS response regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|71658813|sp|Q6AE10|LEXA_LEIXX RecName: Full=LexA repressor gi|50951685|gb|AAT89386.1| SOS response regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 224 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 30/224 (13%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDP-TSF-NKSKRFGIEGR-NRWPSTE 56 S K+ I + I R + PS + GL +S ++ + + G R P+ Sbjct: 17 LSEKQLAILDVIQRSVSQRGYPPSMREIGDAVGLSSLSSVTHQLNQLELSGYLRRDPNRP 76 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +IL + + + P + Sbjct: 77 RALEILIDLPSAA-----------APDFESQTPVGDAAMVPLVGRIAAGVPITAEQQVEE 125 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +P + + K SM+ GD +++ + GD + Sbjct: 126 VFPLPRQLVGN-------GELFMLKVVGESMIDAAICDGDWVVVRAQNTAENGDIVAAML 178 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + KV +R L+ N + + S + +++ Sbjct: 179 D-EEATVKVF-RQRDGHTWLLPRNSNFEPILGDFSQ--ILGKVV 218 >gi|88855441|ref|ZP_01130105.1| SOS response regulator [marine actinobacterium PHSC20C1] gi|88815348|gb|EAR25206.1| SOS response regulator [marine actinobacterium PHSC20C1] Length = 229 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 66/226 (29%), Gaps = 30/226 (13%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDP-TSF-NKSKRFGIEGR-NRWPS 54 TS S K+ I E I R PS + GL +S ++ + + G R P+ Sbjct: 20 TSLSAKQLAILEMIQRAVATQGYPPSMREIGDAVGLSSLSSVTHQLNQLELSGYVRRDPN 79 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 ++L + + + S G P + + Sbjct: 80 RPRAIEVLIDVPSAVDESSTISPSMGDAAM-----------VPLVGRIAAGIPITAEQHV 128 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLI 173 +P + K SM+ GD +++ GD + Sbjct: 129 EEVFPLPRQLVG-------KGDLFMLKVVGDSMIDAAICDGDWVVVRQQQTAENGDIVAA 181 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + KV +R L+ N + + + + + +++ Sbjct: 182 MLD-DEATVKVF-RQRDGHTWLLPRNSNFEPILGDYAQV--LGKVV 223 >gi|322373520|ref|ZP_08048056.1| putative repressor protein [Streptococcus sp. C150] gi|321278562|gb|EFX55631.1| putative repressor protein [Streptococcus sp. C150] Length = 227 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 20/222 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + +T +A + G+ +++ +R E PS E + ++ Sbjct: 5 EKLKARRKELKITQKDIADQLGISYQAYSAWERGVKE-----PSKEKVNRLEQILRVPKG 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 ++ + + + +L + V + N + ++ + Sbjct: 60 YFTEIEIARLYNVLSNKGQNQVLEYTRRLVQEESRKIVTVSENLYEYHVYEKMSAGIGAS 119 Query: 131 YAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 D SM P Y + ++ G + Sbjct: 120 VYDNRNYDTVYFNEELAHDFASWVFGDSMEPKYHNDSVALIRETGFDYDG-AVYAVVWNS 178 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + + L+S+N Y + + + +I+ Sbjct: 179 QTFIKKVYREKEG-LRLVSINKAYKDIYIPYDENPRIVGKIV 219 >gi|227551362|ref|ZP_03981411.1| LexA repressor [Enterococcus faecium TX1330] gi|257887526|ref|ZP_05667179.1| transcriptional repressor LexA [Enterococcus faecium 1,141,733] gi|257896021|ref|ZP_05675674.1| transcriptional repressor LexA [Enterococcus faecium Com12] gi|257898649|ref|ZP_05678302.1| transcriptional repressor LexA [Enterococcus faecium Com15] gi|293378807|ref|ZP_06624964.1| repressor LexA [Enterococcus faecium PC4.1] gi|293570532|ref|ZP_06681587.1| LexA repressor [Enterococcus faecium E980] gi|227179481|gb|EEI60453.1| LexA repressor [Enterococcus faecium TX1330] gi|257823580|gb|EEV50512.1| transcriptional repressor LexA [Enterococcus faecium 1,141,733] gi|257832586|gb|EEV59007.1| transcriptional repressor LexA [Enterococcus faecium Com12] gi|257836561|gb|EEV61635.1| transcriptional repressor LexA [Enterococcus faecium Com15] gi|291609478|gb|EFF38745.1| LexA repressor [Enterococcus faecium E980] gi|292642600|gb|EFF60753.1| repressor LexA [Enterococcus faecium PC4.1] Length = 207 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIFK 60 ++ I + P+ + L TS R +G R P+ + Sbjct: 9 QIEVLRYIHEQVTQKGYPPTVREIGEAVQLSSTSTVHGHLARLEKKGFIQRDPTKPRAIE 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + EK P + + + + Sbjct: 69 LTKQ--------------------GLEKIGIRPTTIPVLGVVTAGEPILAVEDASDFFPI 108 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P S + + SM+ GD +I+ GD ++ + Sbjct: 109 PPNLSSE------EGSLFMLTIRGDSMINAGILDGDNVIVRKQETAQNGDIVIAMTAEDE 162 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N + + + R++ Sbjct: 163 ATCKRFYKEKN-YFRLQPENDLLEPIIL--DQVSILGRVV 199 >gi|11558267|emb|CAC17802.1| LexA repressor [Pseudomonas putida] Length = 202 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E K + G G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGLETK-----------AEENGLPIIGRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AEQHIEQSCNINPSFFHPHADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ + Sbjct: 154 -GDEVTVKRFKR-EGTKVWLLAENPEFAPIEVDLKE 187 >gi|25028379|ref|NP_738433.1| LexA repressor [Corynebacterium efficiens YS-314] gi|259507435|ref|ZP_05750335.1| LexA repressor [Corynebacterium efficiens YS-314] gi|23493664|dbj|BAC18633.1| putative SOS response repressor LexA [Corynebacterium efficiens YS-314] gi|259164923|gb|EEW49477.1| LexA repressor [Corynebacterium efficiens YS-314] Length = 269 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 19/222 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 ++I E I PS + AGL TS + +E + R P+ Sbjct: 53 QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 112 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + T + F P S + N Sbjct: 113 VRHLPETDNRTKAGPKAKARPTAGASPQPELASSTSFIPVVGKIAAGSPILAEQNIEEYY 172 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + SM GD +++ S G+ + Sbjct: 173 PLPADIVG-------DGELYMLQVVGESMRDAGILDGDWVVVRSQPVAEQGEFV-AAMIE 224 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K I L+ N + + E + +++ Sbjct: 225 GEATVKEFHKDASG-IWLLPHNDSFAPI--PAENAEIMGKVV 263 >gi|238852600|ref|ZP_04643010.1| repressor LexA [Lactobacillus gasseri 202-4] gi|238834746|gb|EEQ26973.1| repressor LexA [Lactobacillus gasseri 202-4] Length = 207 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I I E P+ + L TS +E + + + + Sbjct: 8 KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + +E P + + +P Sbjct: 68 EVTEKG-----------------REALGIKPKDIPIVGVVTAGQPILAVQDIDEYFPLPP 110 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM+ GD +I+ N G+ ++ + Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDHVIVRKQSSANNGEIVVAMTEDSEAT 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + ++ + +++ Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199 >gi|270290331|ref|ZP_06196556.1| LexA repressor [Pediococcus acidilactici 7_4] gi|304384850|ref|ZP_07367196.1| repressor LexA [Pediococcus acidilactici DSM 20284] gi|270281112|gb|EFA26945.1| LexA repressor [Pediococcus acidilactici 7_4] gi|304329044|gb|EFL96264.1| repressor LexA [Pediococcus acidilactici DSM 20284] Length = 209 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 41/227 (18%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKS-KRFGIEGRNRWPS 54 S + E I + + P+ + + GL TS ++ K +E P Sbjct: 6 STKQLNVLEYIYQTVQTQGYPPTVREIGKAIGLSSTSTVHGHIDRLQKNGYLEKDPTKPR 65 Query: 55 -TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 E + L A P + Sbjct: 66 ALEITAQGLEALGIQENGEQ----------------------IPVLGVVTAGEPILAVEE 103 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + VP + + + SM+ GD +I+ + G+ ++ Sbjct: 104 ATDFFPVPPEFKNES------SDLFMLTIRGESMINAGILSGDQVIVRKQSTADNGEIVI 157 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ + + +++ Sbjct: 158 AMTDENEATCKRFFKETD-HIRLQPENDTMSPIILDN--VTILGKVV 201 >gi|298529607|ref|ZP_07017010.1| putative phage repressor [Desulfonatronospira thiodismutans ASO3-1] gi|298511043|gb|EFI34946.1| putative phage repressor [Desulfonatronospira thiodismutans ASO3-1] Length = 209 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 18/203 (8%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 T LA G+ T+ +K+ G+ KI + + + Sbjct: 18 TQRQLADILGVGATAITLAKKRGVPASWS-------LKIASVFGINPNWIQTGKGPVYQA 70 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 + +P + GG D N + + G + Sbjct: 71 GREGTFFVPRVSARACAGGGSLDVRD----NIVDEIPFATDWLRKKGH---PENLVLMEV 123 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P +GD ++++ + G + + K + + L+S N Y Sbjct: 124 MGDSMSPELEEGDNILVDLGQKKITGRSPFVLGLEEGLQVKRV-ESAPGIVILLSTNPRY 182 Query: 203 PVDTVEMSDI---EWIARILWAS 222 T+ ++ + R+LW+S Sbjct: 183 SSITLHGDEVDSLRIVGRVLWSS 205 >gi|327473429|gb|EGF18849.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 225 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT + + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLTQASIYQELGVSRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSALYTYPLLTPPHKKEVDKLASRLLERQRKISSLTAYKVLSVELAAGLGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|199596911|ref|ZP_03210344.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258507712|ref|YP_003170463.1| LexA repressor [Lactobacillus rhamnosus GG] gi|199592044|gb|EDZ00118.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257147639|emb|CAR86612.1| LexA repressor [Lactobacillus rhamnosus GG] gi|259649059|dbj|BAI41221.1| transcriptional repressor [Lactobacillus rhamnosus GG] Length = 208 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 55/217 (25%), Gaps = 31/217 (14%) Query: 7 KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K+I + I E H P+ + + GL +S ++ L Sbjct: 11 KQILQTIYEAIEDHGYPPTVREIGKSVGLSSSS-------------------TVAAYLEK 51 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 L D E L F + G G G + + Sbjct: 52 LL-----AAGLIAKDPSKPRTIEVTAAGLDFIGVQAQGIPIVGTVAAGVPITAIENIDDY 106 Query: 125 SPHNGIYAIQTQ-DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P + Q +SM+ + GD +I+ G ++ + Sbjct: 107 FPVPDDLPYSADELFMLRVQGSSMIKIGILDGDQIIVKKQNDAENGQIVVAMTEEDEATV 166 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L N + + ++ Sbjct: 167 KRFYKEKHG-VRLHPENDDMDDMYFPS--VTILGIVV 200 >gi|145300731|ref|YP_001143572.1| prophage transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853503|gb|ABO91824.1| prophage transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 238 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 63/211 (29%), Gaps = 20/211 (9%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT- 83 AR+A + + KR+ EG P + + A T L+ + Sbjct: 30 RAFARRADMSD---SGLKRYLYEGTI--PPIDRALNLARAGGVTFDWLVFGIGDGVNSPL 84 Query: 84 ----EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------EIRSPHNGIYAI 133 Y + G+ P Sbjct: 85 SHVSHDATSGAQGSYRADEFTTISAYQVEASAGHGSQITDEPLAEPMAFRSDWLRREGFE 144 Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + + SM P GD++++ D L + G + K L G I Sbjct: 145 PAKMAVIRAKGDSMEPTINDGDVILIRLKNGEAPRDGLYVLRLEGGLFVKRLQFDLGG-I 203 Query: 194 DLMSLNCCYPVDTV---EMSDIEWIARILWA 221 ++S N Y + E+++++ + R++WA Sbjct: 204 RVISDNPLYKSRDLNKAELAELDLVGRVVWA 234 >gi|68171374|ref|ZP_00544768.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Ehrlichia chaffeensis str. Sapulpa] gi|67999199|gb|EAM85855.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Ehrlichia chaffeensis str. Sapulpa] Length = 211 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 68/216 (31%), Gaps = 21/216 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ + LA KA + + G++ P+++ + I N + Sbjct: 10 IVTRMRYQMDKMGINARELAHKADVGKSFVYDIL----SGKSTNPTSKKLMAIAKVLNVS 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ + L + + + Sbjct: 66 LSYLISDDNYTYGQNNVNIMPVYDLELENGKV----------ASSGDVNLYLSSNI---- 111 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + + SM+P D+++++ ++ L + + + + L Sbjct: 112 NLTSNMKNLRVYYVKGDSMIPTLMNQDVVLVDIGDKIPHPAGLFVIVDSVGVSIRRLEYL 171 Query: 189 RGR---SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + + ++S N Y + D+E + RI+W Sbjct: 172 KDNQKIKLHVVSDNKKYSSYECHLEDMEILGRIIWY 207 >gi|29427796|sp|Q8FPF5|LEXA_COREF RecName: Full=LexA repressor Length = 232 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 19/222 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 ++I E I PS + AGL TS + +E + R P+ Sbjct: 16 QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 75 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + T + F P S + N Sbjct: 76 VRHLPETDNRTKAGPKAKARPTAGASPQPELASSTSFIPVVGKIAAGSPILAEQNIEEYY 135 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + SM GD +++ S G+ + Sbjct: 136 PLPADIVG-------DGELYMLQVVGESMRDAGILDGDWVVVRSQPVAEQGEFV-AAMIE 187 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K I L+ N + + E + +++ Sbjct: 188 GEATVKEFHKDASG-IWLLPHNDSFAPI--PAENAEIMGKVV 226 >gi|167562848|ref|ZP_02355764.1| LexA repressor [Burkholderia oklahomensis EO147] gi|167570025|ref|ZP_02362899.1| LexA repressor [Burkholderia oklahomensis C6786] Length = 215 Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 61/214 (28%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I R ER P + +A + G E R + + Sbjct: 1 MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + L G G+ Sbjct: 54 GVIELAAG----------ASRGIRLIGIEDSPHQLTLPHAALMQLSLPLVGRVAAGSPIL 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L R G ++L++ N Y V+ Sbjct: 163 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 195 >gi|157149913|ref|YP_001449951.1| putative transcriptional repressor [Streptococcus gordonii str. Challis substr. CH1] gi|157074707|gb|ABV09390.1| putative transcriptional repressor [Streptococcus gordonii str. Challis substr. CH1] Length = 225 Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 59/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSALYTYPLLTLPHKKEVDQLASRLLERQRKISSLTAYKVLSVELAAGLGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L +N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLEPINPDYEDLFAPYEDQPTIVGIVV 217 >gi|29376142|ref|NP_815296.1| LexA repressor [Enterococcus faecalis V583] gi|227518770|ref|ZP_03948819.1| LexA repressor [Enterococcus faecalis TX0104] gi|227553381|ref|ZP_03983430.1| LexA repressor [Enterococcus faecalis HH22] gi|229545804|ref|ZP_04434529.1| LexA repressor [Enterococcus faecalis TX1322] gi|229549997|ref|ZP_04438722.1| LexA repressor [Enterococcus faecalis ATCC 29200] gi|256853143|ref|ZP_05558513.1| transcriptional repressor LexA [Enterococcus faecalis T8] gi|293382977|ref|ZP_06628895.1| repressor LexA [Enterococcus faecalis R712] gi|293389534|ref|ZP_06633991.1| repressor LexA [Enterococcus faecalis S613] gi|307271000|ref|ZP_07552283.1| repressor LexA [Enterococcus faecalis TX4248] gi|307273206|ref|ZP_07554452.1| repressor LexA [Enterococcus faecalis TX0855] gi|307274943|ref|ZP_07556106.1| repressor LexA [Enterococcus faecalis TX2134] gi|307278056|ref|ZP_07559140.1| repressor LexA [Enterococcus faecalis TX0860] gi|307289124|ref|ZP_07569080.1| repressor LexA [Enterococcus faecalis TX0109] gi|307291978|ref|ZP_07571847.1| repressor LexA [Enterococcus faecalis TX0411] gi|312900778|ref|ZP_07760075.1| repressor LexA [Enterococcus faecalis TX0470] gi|312903326|ref|ZP_07762506.1| repressor LexA [Enterococcus faecalis TX0635] gi|312907552|ref|ZP_07766543.1| repressor LexA [Enterococcus faecalis DAPTO 512] gi|312910170|ref|ZP_07769017.1| repressor LexA [Enterococcus faecalis DAPTO 516] gi|312951512|ref|ZP_07770408.1| repressor LexA [Enterococcus faecalis TX0102] gi|44888101|sp|Q834R0|LEXA_ENTFA RecName: Full=LexA repressor gi|29343604|gb|AAO81366.1| transcriptional repressor LexA [Enterococcus faecalis V583] gi|227073765|gb|EEI11728.1| LexA repressor [Enterococcus faecalis TX0104] gi|227177486|gb|EEI58458.1| LexA repressor [Enterococcus faecalis HH22] gi|229304910|gb|EEN70906.1| LexA repressor [Enterococcus faecalis ATCC 29200] gi|229309116|gb|EEN75103.1| LexA repressor [Enterococcus faecalis TX1322] gi|256711602|gb|EEU26640.1| transcriptional repressor LexA [Enterococcus faecalis T8] gi|291079642|gb|EFE17006.1| repressor LexA [Enterococcus faecalis R712] gi|291081151|gb|EFE18114.1| repressor LexA [Enterococcus faecalis S613] gi|306496976|gb|EFM66524.1| repressor LexA [Enterococcus faecalis TX0411] gi|306499833|gb|EFM69194.1| repressor LexA [Enterococcus faecalis TX0109] gi|306505453|gb|EFM74639.1| repressor LexA [Enterococcus faecalis TX0860] gi|306508391|gb|EFM77498.1| repressor LexA [Enterococcus faecalis TX2134] gi|306510191|gb|EFM79215.1| repressor LexA [Enterococcus faecalis TX0855] gi|306512498|gb|EFM81147.1| repressor LexA [Enterococcus faecalis TX4248] gi|310626580|gb|EFQ09863.1| repressor LexA [Enterococcus faecalis DAPTO 512] gi|310630478|gb|EFQ13761.1| repressor LexA [Enterococcus faecalis TX0102] gi|310633202|gb|EFQ16485.1| repressor LexA [Enterococcus faecalis TX0635] gi|311289443|gb|EFQ67999.1| repressor LexA [Enterococcus faecalis DAPTO 516] gi|311292259|gb|EFQ70815.1| repressor LexA [Enterococcus faecalis TX0470] gi|315027248|gb|EFT39180.1| repressor LexA [Enterococcus faecalis TX2137] gi|315029367|gb|EFT41299.1| repressor LexA [Enterococcus faecalis TX4000] gi|315033987|gb|EFT45919.1| repressor LexA [Enterococcus faecalis TX0017] gi|315036996|gb|EFT48928.1| repressor LexA [Enterococcus faecalis TX0027] gi|315147283|gb|EFT91299.1| repressor LexA [Enterococcus faecalis TX4244] gi|315150518|gb|EFT94534.1| repressor LexA [Enterococcus faecalis TX0012] gi|315152465|gb|EFT96481.1| repressor LexA [Enterococcus faecalis TX0031] gi|315155743|gb|EFT99759.1| repressor LexA [Enterococcus faecalis TX0043] gi|315158091|gb|EFU02108.1| repressor LexA [Enterococcus faecalis TX0312] gi|315164033|gb|EFU08050.1| repressor LexA [Enterococcus faecalis TX1302] gi|315169017|gb|EFU13034.1| repressor LexA [Enterococcus faecalis TX1341] gi|315169746|gb|EFU13763.1| repressor LexA [Enterococcus faecalis TX1342] gi|315172293|gb|EFU16310.1| repressor LexA [Enterococcus faecalis TX1346] gi|315575849|gb|EFU88040.1| repressor LexA [Enterococcus faecalis TX0309B] gi|315577688|gb|EFU89879.1| repressor LexA [Enterococcus faecalis TX0630] gi|315580501|gb|EFU92692.1| repressor LexA [Enterococcus faecalis TX0309A] gi|327535151|gb|AEA93985.1| repressor lexA [Enterococcus faecalis OG1RF] gi|329571682|gb|EGG53363.1| repressor LexA [Enterococcus faecalis TX1467] Length = 209 Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 54/215 (25%), Gaps = 29/215 (13%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + I E P+ + + L TS +E + + + + T Sbjct: 14 EVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRDPTKPRAIELT 73 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 E + EK P + + +P Sbjct: 74 PEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEASDFFPLPPDLR 116 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + SM+ GD +I+ N GD ++ + K Sbjct: 117 TEENAL------FMLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAMTDEDEATCKR 170 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I L N ++ + + +++ Sbjct: 171 FFR-EVDHIRLQPENDALAPILLDN--VTILGKVV 202 >gi|94499501|ref|ZP_01306038.1| LexA repressor [Oceanobacter sp. RED65] gi|94428255|gb|EAT13228.1| LexA repressor [Oceanobacter sp. RED65] Length = 202 Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 56/215 (26%), Gaps = 37/215 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I + + P + +A++ G Sbjct: 1 MIKLTARQQQVLDLIKQAIDDTGYPPTRAEIAQELGFKSP-------------------- 40 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 41 -----------NAAEEHLKALARKGAIEMIPGASRGIRLAQQEETGLPLIGRVAAGEPIL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + T D + SM + GD++ ++ QV G ++ + Sbjct: 90 AQEHVERHVQLPRDFFHPTADFLLEVHGDSMKDIGIMNGDLIAVHKTQQVRNGQIVVARV 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 + ++ K + + L+ N Y V++ Sbjct: 150 NSEEVTVKRFQKDKN-IVKLLPENSEYSPIVVDLE 183 >gi|310779861|ref|YP_003968193.1| phage repressor [Ilyobacter polytropus DSM 2926] gi|309749184|gb|ADO83845.1| putative phage repressor [Ilyobacter polytropus DSM 2926] Length = 236 Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 56/233 (24%), Gaps = 29/233 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +++ G ++ K R P + I K ++A Sbjct: 7 KYLSNFMADKGYKLEYISQATGASVSAIGHYKTGE-----RIPKDDFIEKFISAFISDNK 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG---------------------FFDSGVF 109 + + + R + + Sbjct: 62 ESEKVRYLISRDRTPRPIIEKIEDLERKLEDSKNIKNQSNISISKLKSGSTEMIQVPVYN 121 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 PE ++ SM P + G +++ I+V D Sbjct: 122 SVSAGSGLEPSPEPVDVLLLPKSVAEGCVIINVWGDSMEPTIKDGYAVMVKREIEVANND 181 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILWA 221 + G+ + K L S N YP + + + +++W Sbjct: 182 IGIFIH-EGEALVKRY-RCFDGKCYLYSDNQNYPPREIRKNDEFKVCGKVIWI 232 >gi|289565840|ref|ZP_06446282.1| LOW QUALITY PROTEIN: LexA repressor [Enterococcus faecium D344SRF] gi|289162383|gb|EFD10241.1| LOW QUALITY PROTEIN: LexA repressor [Enterococcus faecium D344SRF] Length = 155 Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 10/128 (7%) Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151 P + + + +P S + + SM+ Sbjct: 29 PTTIPVLGVVTAGEPILAVEDASDFFPIPPNLSSE------EGSLFMLTIRGDSMINAGI 82 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD +I+ GD ++ + K + L N + Sbjct: 83 LDGDNVIVRKQETAQNGDIVIAMTAEDEATCKRFYKEKN-FFRLQPENDLLEPIIL--DQ 139 Query: 212 IEWIARIL 219 + + R++ Sbjct: 140 VSILGRVV 147 >gi|184201222|ref|YP_001855429.1| LexA repressor [Kocuria rhizophila DC2201] gi|183581452|dbj|BAG29923.1| LexA repressor [Kocuria rhizophila DC2201] Length = 252 Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 57/229 (24%), Gaps = 19/229 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTES 57 KI A+ R PS + GL S + +++G R R P Sbjct: 22 QAKILGAVQRSIADRGYPPSMREIGDIVGLASLSSVTHQLGQLEKWGYLRRDPRRPRAME 81 Query: 58 IFK------ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + + P + + G Sbjct: 82 VLRPLSQQELDRHLGAAESAGEQSPSGASVSPLVPTMSAVPAVDEDAAMVPVPLVGRIAA 141 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDR 170 G E + Q + SM+ GD +++ GD Sbjct: 142 GGPITAEQSVEGVYSLPRQFVGHGQLFMLRVSGDSMIDAAICDGDWVVVRQQNSAENGD- 200 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K +R L+ N Y + + + +++ Sbjct: 201 VVAALLDDEATVKTF-RQRDGHTWLLPQNTRYEPILGDHA--TVMGKVV 246 >gi|315924326|ref|ZP_07920549.1| bifunctional S24 family peptidase/transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622397|gb|EFV02355.1| bifunctional S24 family peptidase/transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 246 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 70/237 (29%), Gaps = 35/237 (14%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++ LT L+ ++G+ ++ +K P+ +++ + ++ Sbjct: 13 LEKISEYKKKMRLTTKELSNRSGIPISTLSKLLTGESN----NPTLKNLQALANVFECSL 68 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS----------GVFPTGNKWNTVG 119 L D + + ++I + ++ P + V Sbjct: 69 NDFGALDTFDLSISNSEREQIRKIRKMDPYGRKAVNTLIDIEFERILQKEPNSDVARWVD 128 Query: 120 VPEIRSP--------------HNGIYAIQ--TQDTRHKTQDTSMLPLYRKGDILILNSAI 163 +P + + D K SM P + + + ++ Sbjct: 129 LPFQLLKASAGSGQFLDAENFEMRAFKNPPVSADFALKISGDSMEPKFSDEETVFVHQQP 188 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + G + G+ K + + L+SLN Y + + +++ Sbjct: 189 DLEDGQIGIFVFN-GEGYIKQMDRKGHS---LISLNTKYDPILITGSDQFRIVGKVV 241 >gi|300173176|ref|YP_003772342.1| LexA repressor [Leuconostoc gasicomitatum LMG 18811] gi|299887555|emb|CBL91523.1| LexA repressor [Leuconostoc gasicomitatum LMG 18811] Length = 213 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 59/220 (26%), Gaps = 28/220 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++ I + P+ + GL +S +R +G + K Sbjct: 9 KQLQVLRFIHEAQITNGYPPTVREVGEAVGLSSSSTIHGHIERLVKKGY--------LLK 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + ++ D + + IP+L +G+ + Sbjct: 61 DASKPRARAIEVTDSGLEALGVSITPGR-IPVLGLVTAGTPILAVE-----EEATEFFPI 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + SM+ + GD +I+ + GD ++ + Sbjct: 115 PDNLMQF------DGDMFMLNVRGNSMVNIGILDGDKVIVRKQDNADNGDVVVAMNDDNE 168 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N ++ + + +++ Sbjct: 169 ATVKRFFR-EADHFRLQPENDAMAPIILKS--VSILGKVI 205 >gi|322388682|ref|ZP_08062281.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140471|gb|EFX35977.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 228 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 53/218 (24%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI-------L 62 E + + +T +A + G+ +++ +R + E I K+ L Sbjct: 5 EKLKARRKELKMTQKDIADQLGVSYQAYSAWERGVKQPSREKVKLLEHILKVSKGYFTEL 64 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ + + + Sbjct: 65 EIVRLYNTLSDEDKDQALNYVRSLVQKEKCKNVVSISEKLYEYHVYEKMSAGIGSSVYND 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y+ G + ++ G + Sbjct: 125 QNYDTVYFDEELAHDFASWISGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNSQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y + + + I+ Sbjct: 184 KRVYREEHG-LRLVSINPNYKDIFLSYDEDPRIVGIIV 220 >gi|314953282|ref|ZP_07856213.1| repressor LexA [Enterococcus faecium TX0133A] gi|313594664|gb|EFR73509.1| repressor LexA [Enterococcus faecium TX0133A] Length = 210 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIFK 60 ++ I + P+ + L TS R +G R P+ + Sbjct: 12 QIEVLRYIHEQVTQKGYPPTVREIGEAVQLSSTSTVHGHLARLEKKGFIQRDPTKPRAIE 71 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + EK P + + + + Sbjct: 72 LTKQ--------------------GLEKIGIRPTTIPVLGVVTAGEPILAVEDASDFFPI 111 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P S + + SM+ GD +I+ GD ++ + Sbjct: 112 PPNLSSE------EGSLFMLTIRGDSMINAGILDGDNVIVRKQETAQNGDIVIAMTAEDE 165 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N + + + R++ Sbjct: 166 ATCKRFYKEKN-FFRLQPENDLLEPIIL--DQVSILGRVV 202 >gi|297250710|ref|ZP_06864870.2| putative repressor protein [Neisseria polysaccharea ATCC 43768] gi|296838118|gb|EFH22056.1| putative repressor protein [Neisseria polysaccharea ATCC 43768] Length = 236 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 26 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 80 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132 K+ G + + Sbjct: 81 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 140 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N D L + +++ K L G Sbjct: 141 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 199 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 I+++S N YP + + D+E I R+ W Sbjct: 200 INVISANEAYPTFEINLNDLTDDVEIIGRVEW 231 >gi|315652105|ref|ZP_07905103.1| LexA repressor [Eubacterium saburreum DSM 3986] gi|315485597|gb|EFU75981.1| LexA repressor [Eubacterium saburreum DSM 3986] Length = 202 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 61/224 (27%), Gaps = 33/224 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I+ I + PS + GL TS ++ +E + Sbjct: 1 MDTLTPKQEEIYNIIKDSILKKGYPPSVREIGELVGLKSTSSVHAQLNTLEKKGYIRKDP 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 S + + T++ + P + N + Sbjct: 61 SKPRTIEITDDEFNLTRRE-----------------VVNVPMVGTVAAGMPLLADENISD 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 +P P+ K + SM+ GD +I+ GD ++ Sbjct: 104 YFPIPTDFLPNT-------DIFMLKVKGESMINAGIYDGDQIIVAKQNTAKNGDIIVALI 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V +++ + +++ Sbjct: 157 -EDSATVKKFFK-ENNYYRLQPENDFMEPILV--NEVSILGKVI 196 >gi|260584011|ref|ZP_05851759.1| repressor protein LexA [Granulicatella elegans ATCC 700633] gi|260158637|gb|EEW93705.1| repressor protein LexA [Granulicatella elegans ATCC 700633] Length = 207 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 53/224 (23%), Gaps = 41/224 (18%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES 57 + I + H P+ + GL TS ++ ++ G R PS Sbjct: 8 KQIDVLRFIYEEVKEHGYPPTVREICNAVGLSSTSTVHGHLSRLEKNGYI--QRDPSKPR 65 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 ++ L + + G G+ Sbjct: 66 AIEL---------------------------TQIGLKAIGATATAIPMLGTVSAGSPILA 98 Query: 118 VGVPEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + P + SM+ GD +I+ + G+ ++ Sbjct: 99 IEEANGFFPIPPDLQQDAEDLFMLTIKGDSMINAGIFDGDSVIVRKQSTASNGEIVIAMT 158 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N + + + +++ Sbjct: 159 EEDTATCKRFYRESD-HIRLEPENDQLDPIILPN--VTILGKVV 199 >gi|330960371|gb|EGH60631.1| LexA repressor [Pseudomonas syringae pv. maculicola str. ES4326] Length = 202 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 62/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E + E L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEARPDESSLPVI-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + + + + SM + GD+L +++ + G ++ + Sbjct: 94 AQQHIEESCNINPAFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ D Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187 >gi|77460093|ref|YP_349600.1| LexA repressor [Pseudomonas fluorescens Pf0-1] gi|77384096|gb|ABA75609.1| LexA repressor [Pseudomonas fluorescens Pf0-1] Length = 202 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 60/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E K E L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEAKVDESTLPII-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AQQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V + D Sbjct: 154 -GDEVTVKRFKRD-GSKVWLIAENPEFAPIEVNLKD 187 >gi|83749661|ref|ZP_00946642.1| LexA repressor [Ralstonia solanacearum UW551] gi|207723258|ref|YP_002253657.1| lexa repressor protein [Ralstonia solanacearum MolK2] gi|207743347|ref|YP_002259739.1| lexa repressor protein [Ralstonia solanacearum IPO1609] gi|83723663|gb|EAP70860.1| LexA repressor [Ralstonia solanacearum UW551] gi|206588456|emb|CAQ35419.1| lexa repressor protein [Ralstonia solanacearum MolK2] gi|206594744|emb|CAQ61671.1| lexa repressor protein [Ralstonia solanacearum IPO1609] Length = 216 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 23/216 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I + +R P + +A + G + + E Sbjct: 1 MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA R T L G G+ Sbjct: 45 EHLRALARKGVIELTPGASRGIRLRATGDASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + D K + SM GD+L + A + G ++ + Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRANEATNGKIVVAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + GR ++L++ N + V++ Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFKPIHVDLDR 198 >gi|312868402|ref|ZP_07728602.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096147|gb|EFQ54391.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 228 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 21/223 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + +T +A + G+ +++ +R + PS E + ++ N Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKQ-----PSREKVQQLEQILNVPKG 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPHNG 129 +L + E + L + + V P + ++ + Sbjct: 60 YFTELEIARLYNILSDEAKDQALSYVRGLAQKEKCKNVVPISEKLYEYHVYEQMSAGIGS 119 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 D SM P Y+ G + ++ G + Sbjct: 120 SVYNDQNYDTVYFDEELPHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCN 178 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y + + + I+ Sbjct: 179 SRTYIKRVYREEHG-LRLVSINPNYKDIFLSYDEDPRIVGIIV 220 >gi|196037690|ref|ZP_03105001.1| helix-turn-helix domain protein [Bacillus cereus NVH0597-99] gi|196031932|gb|EDX70528.1| helix-turn-helix domain protein [Bacillus cereus NVH0597-99] Length = 250 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 63/245 (25%), Gaps = 33/245 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + I I + + +++T S LA + G+ ++ + + + PS+ + K Sbjct: 1 MTDLQKETIVTNIKKYLKENDMTQSELASQIGIARSTLSDYMNYRAK-----PSSGVLEK 55 Query: 61 ILAATNE------------------------TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + A + + + + + L Sbjct: 56 MAAVFGVTKADIDTTYKNKKAAIVDGVLQLVSEEGTMINGGTITSSLMTANQLGLLQTEK 115 Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 + G G V R + SM + G Sbjct: 116 MVSNPEIPVIGKIAAGTPIEAVQDIVDRIVPPYKTNNVDELFGLVVNGESMNKIVPNGHY 175 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMS---DI 212 +L V G+ + K + ++ S + + DI Sbjct: 176 AVLKKQPDVENGEIAAVIVNGHYATLKKVYKFTDLMVLEPCSHDESFKDQQFSRDNCEDI 235 Query: 213 EWIAR 217 + I + Sbjct: 236 KIIGK 240 >gi|257878187|ref|ZP_05657840.1| transcriptional repressor LexA [Enterococcus faecium 1,230,933] gi|257881031|ref|ZP_05660684.1| transcriptional repressor LexA [Enterococcus faecium 1,231,502] gi|257884691|ref|ZP_05664344.1| transcriptional repressor LexA [Enterococcus faecium 1,231,501] gi|257889615|ref|ZP_05669268.1| transcriptional repressor LexA [Enterococcus faecium 1,231,410] gi|260559232|ref|ZP_05831418.1| transcriptional repressor LexA [Enterococcus faecium C68] gi|261207766|ref|ZP_05922451.1| transcriptional repressor LexA [Enterococcus faecium TC 6] gi|293553450|ref|ZP_06674078.1| LexA repressor [Enterococcus faecium E1039] gi|293560339|ref|ZP_06676835.1| LexA repressor [Enterococcus faecium E1162] gi|294614044|ref|ZP_06693973.1| LexA repressor [Enterococcus faecium E1636] gi|294617209|ref|ZP_06696859.1| LexA repressor [Enterococcus faecium E1679] gi|294623185|ref|ZP_06702064.1| LexA repressor [Enterococcus faecium U0317] gi|314939164|ref|ZP_07846421.1| repressor LexA [Enterococcus faecium TX0133a04] gi|314943939|ref|ZP_07850650.1| repressor LexA [Enterococcus faecium TX0133C] gi|314948043|ref|ZP_07851446.1| repressor LexA [Enterococcus faecium TX0082] gi|314993373|ref|ZP_07858740.1| repressor LexA [Enterococcus faecium TX0133B] gi|314994959|ref|ZP_07860080.1| repressor LexA [Enterococcus faecium TX0133a01] gi|257812415|gb|EEV41173.1| transcriptional repressor LexA [Enterococcus faecium 1,230,933] gi|257816689|gb|EEV44017.1| transcriptional repressor LexA [Enterococcus faecium 1,231,502] gi|257820529|gb|EEV47677.1| transcriptional repressor LexA [Enterococcus faecium 1,231,501] gi|257825975|gb|EEV52601.1| transcriptional repressor LexA [Enterococcus faecium 1,231,410] gi|260074989|gb|EEW63305.1| transcriptional repressor LexA [Enterococcus faecium C68] gi|260078149|gb|EEW65855.1| transcriptional repressor LexA [Enterococcus faecium TC 6] gi|291593090|gb|EFF24670.1| LexA repressor [Enterococcus faecium E1636] gi|291596522|gb|EFF27765.1| LexA repressor [Enterococcus faecium E1679] gi|291597402|gb|EFF28574.1| LexA repressor [Enterococcus faecium U0317] gi|291602327|gb|EFF32551.1| LexA repressor [Enterococcus faecium E1039] gi|291605700|gb|EFF35138.1| LexA repressor [Enterococcus faecium E1162] gi|313590816|gb|EFR69661.1| repressor LexA [Enterococcus faecium TX0133a01] gi|313592157|gb|EFR71002.1| repressor LexA [Enterococcus faecium TX0133B] gi|313597423|gb|EFR76268.1| repressor LexA [Enterococcus faecium TX0133C] gi|313641544|gb|EFS06124.1| repressor LexA [Enterococcus faecium TX0133a04] gi|313645523|gb|EFS10103.1| repressor LexA [Enterococcus faecium TX0082] Length = 207 Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 35/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIFK 60 ++ I + P+ + L TS R +G R P+ + Sbjct: 9 QIEVLRYIHEQVTQKGYPPTVREIGEAVQLSSTSTVHGHLARLEKKGFIQRDPTKPRAIE 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + EK P + + + + Sbjct: 69 LTKQ--------------------GLEKIGIRPTTIPVLGVVTAGEPILAVEDASDFFPI 108 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P S + + SM+ GD +I+ GD ++ + Sbjct: 109 PPNLSSE------EGSLFMLTIRGDSMINAGILDGDNVIVRKQETAQNGDIVIAMTAEDE 162 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N + + + R++ Sbjct: 163 ATCKRFYKEKN-FFRLQPENDLLEPIIL--DQVSILGRVV 199 >gi|46019830|emb|CAE52354.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 228 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 52/218 (23%), Gaps = 11/218 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKI-------L 62 E + + LT +A + G+ +++ +R E + + E I K+ + Sbjct: 5 EKLKARRKELKLTQKNIADQLGISYQAYSAWERGVKEPSKEKVKRLEQILKVPRGYFTEI 64 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 ++ + Sbjct: 65 EIVRLYNTLSNKGKNQVVEYARDLVQKEKTQQVISVSENLYEYHVYEKMSAGIGASVYDN 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P Y G + ++ G + Sbjct: 125 RNYDTVYFNEELAHDFASWVSGDSMEPKYHNGSVALIRETGFDYDG-AVYAVVWNSQTFI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y + + + +I+ Sbjct: 184 KKVYREEEG-LRLVSINKAYKDIHIPYDENPRIVGKIV 220 >gi|329298588|ref|ZP_08255924.1| LexA repressor [Plautia stali symbiont] Length = 211 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 71/217 (32%), Gaps = 14/217 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + E I + + LT LA G+ + ++ ++ P + + ++ Sbjct: 1 MMKKESGGERIRQRRKALKLTQQALANGIGVSHVAVSQWEKEETV-----PRGKHLLRLA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++D +T + + + + W V Sbjct: 56 ELLQCSAAWIIDGDGQPFASTHASPALTAVPLVTLVQAADWLNKQRLQ----WQQQAVRF 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + S + +D +M P YR GD LI + GD +++ + Sbjct: 112 LYSDKP----LSDSALAVTLEDDAMNPAYRAGDRLIFDPQHVPQPGD-VVLARVDEVAMV 166 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +++ + L LN +PV + S +E I ++ Sbjct: 167 RIIRMHDEQIFSLRPLNEDFPVQQSQKSALELIGTLV 203 >gi|24379803|ref|NP_721758.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24377771|gb|AAN59064.1|AE014973_4 putative transcriptional regulator [Streptococcus mutans UA159] Length = 284 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 3/99 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E + I D SM PL+ GD++ + ++ G +++ + Sbjct: 187 EKQETIKYPIPIPEHDIALIVNGNSMEPLFYNGDVIFVKKTKAIHHGQIIVVIVN-NEAY 245 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 K L + + I L+SLN Y ++ D IE I ++ Sbjct: 246 VKKLYRK-NKEIRLISLNPDYDDIILKEDDTIEVIGTVI 283 Score = 42.1 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 44/162 (27%), Gaps = 6/162 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + R+ + S LA + +S N+ + P +I KI Sbjct: 2 KAISANLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKS-----LPKIGNIQKIADYFG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + S ++ + D + + T + Sbjct: 57 LQKSDIDPRFASKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDET 116 Query: 127 HNGIYAIQTQDT-RHKTQDTSMLPLYRKGDILILNSAIQVNC 167 A ++ T K D+ + I+ ++ I+ Sbjct: 117 TEDKVADKSNHTQYQKVVDSFIAKELNDQTIIHWDNVIKAKD 158 >gi|302389741|ref|YP_003825562.1| SOS-response transcriptional repressor, LexA [Thermosediminibacter oceani DSM 16646] gi|302200369|gb|ADL07939.1| SOS-response transcriptional repressor, LexA [Thermosediminibacter oceani DSM 16646] Length = 201 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 33/217 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K+I + I + PS + L T+ ++ L Sbjct: 9 QKQILDYIYDFLNKRGYPPSVREICSATNLKSTA-------------------TVHSYLV 49 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + D K+ + P + N +P+ Sbjct: 50 QLEKKGYISRDPQKPRAIVVMDKKTLGKDIVPVPLVGKVTAGQPMLAEENIQGVFSLPKE 109 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P ++ K Q SM+ GD +I+ GD ++ + Sbjct: 110 MVP-------DSEVFMLKVQGDSMIDAGIFDGDYVIVKVTSTAENGDIVVAL-LGDEATV 161 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V+ D++ + +++ Sbjct: 162 KRFFKEKD-HIRLQPENQYMEPIIVK--DVKILGKVI 195 >gi|257784356|ref|YP_003179573.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257472863|gb|ACV50982.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 210 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 27/217 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + N+T + LA K G + + + + R + + ++ N ++ L Sbjct: 5 IAEARKLRNITQAELAEKMGTTQQTVQRYETNQVNIR-----MDKMIEMSEILNVSLAYL 59 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L + S + +PLL G G + V E I+ Sbjct: 60 LGMSSSPEISEVSDMAPVPLL-------------GSIAAGTPIEMISVDETYDIPADIHE 106 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGR 191 Q K SM + G ++N + + G D K + Sbjct: 107 RYPQAFLLKVVGESMNRVLPNGCYALINPCKEEIKPMKAYAVCVNGFDATIKRVKPLSNG 166 Query: 192 SIDLMSLN--CCYPVDTVEMSDIE-----WIARILWA 221 +L+ + + + ++I+ I ++W Sbjct: 167 -YELIPDSIDPTFRPQIFDFNEIDTQPISIIGEVIWY 202 >gi|91214040|ref|YP_544026.1| putative regulatory protein [Escherichia coli UTI89] gi|117626694|ref|YP_860017.1| putative regulatory protein [Escherichia coli APEC O1] gi|218561557|ref|YP_002394470.1| transcriptional regulator from phage origin [Escherichia coli S88] gi|300925249|ref|ZP_07141146.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] gi|307139345|ref|ZP_07498701.1| putative transcriptional regulator from phage origin [Escherichia coli H736] gi|331643341|ref|ZP_08344472.1| regulatory protein [Escherichia coli H736] gi|91075614|gb|ABE10495.1| putative regulatory protein [Escherichia coli UTI89] gi|115515818|gb|ABJ03893.1| putative regulatory protein [Escherichia coli APEC O1] gi|218368326|emb|CAR06145.1| putative transcriptional regulator from phage origin [Escherichia coli S88] gi|300418618|gb|EFK01929.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] gi|331036812|gb|EGI09036.1| regulatory protein [Escherichia coli H736] Length = 230 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 75/227 (33%), Gaps = 17/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + N+ + LA G+D + ++ + G+ + + +++ I + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57 Query: 68 TICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 I L F +E + + +G+ G+ + + E Sbjct: 58 DIADLFTSDFKSNTVCKNSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117 Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R+ + + SM P GD++ ++ +I GD + + Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y + ++L SQ Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222 >gi|147668729|ref|YP_001213547.1| phage repressor like transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269677|gb|ABQ16669.1| phage repressor like transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 207 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 11/189 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + ++ +T + LA +GL + + ++ PS E++ KI A Sbjct: 4 QIGLKVKQLRIARGMTQAKLADASGLTRGYISMLELR----KSTMPSYEALSKIARALGV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 I + P + ++ L P S F + E Sbjct: 60 DIKEFKTDPEIVRLESPEEVLRKYQLMAPVS----IPVYDHFYVHAGDAALAPIEYIYRA 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 +A +K + M P+ +GDIL+++ G+ LL G+++ LI Sbjct: 116 RESFA-PQNIEAYKVRGNCMEPVISEGDILLIDRDRTPQKGNILLCVVD-GEVIVGKLIE 173 Query: 188 RRGRSIDLM 196 + + L Sbjct: 174 Q-NGVLYLK 181 >gi|227534620|ref|ZP_03964669.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187721|gb|EEI67788.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 277 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 68/278 (24%), Gaps = 66/278 (23%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S + I + ++ +T + L+R G+ + + + R SI K Sbjct: 1 MPNKSANILGPVIKELRKQKKMTQADLSRITGIAQNTISNHENQN-----RALDENSIIK 55 Query: 61 ILAATNETICQLL----------------------------------------------- 73 A T L Sbjct: 56 YAKALGVTPQALYDAAIVKKSIDTKSMVIDVRQTAIDEINDVVKELVTPRVQKVASYAEK 115 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIY 131 L E + G+ G + P Sbjct: 116 QLNEQQSPDNVVSLDEARVERNLDEPEFNVEVDGIVAAGYGAFNDDRNEPMDTVKIPDSA 175 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 D K SM P Y G+++ + V G ++ K LI Sbjct: 176 IPSHYDYCFKVVGDSMHPTYDDGELVFVQKTQDVTNGMIAVVDID-DMTFIKKLIFEEN- 233 Query: 192 SIDLMSLNCC---------YPVDTVEMSD-IEWIARIL 219 + L SLN YP + +D IE I +++ Sbjct: 234 RLCLRSLNDDVDEETGERIYPDFYADDTDNIEVIGKVV 271 >gi|290968534|ref|ZP_06560073.1| repressor LexA [Megasphaera genomosp. type_1 str. 28L] gi|290781530|gb|EFD94119.1| repressor LexA [Megasphaera genomosp. type_1 str. 28L] Length = 205 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 57/219 (26%), Gaps = 36/219 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 ++I E I ++ PS + ++ GL TS + + +G R Sbjct: 12 QRQILEYIRACVHQYGYPPSVREICQEVGLSSTSTVHSYLQALEEKGYIR---------- 61 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T + + + G G Sbjct: 62 -----------------RNPTKNRNIALVDEGNWRSKKLVPLPLVGQVRAGEPIFAEECV 104 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E P + + SM +GD+LI+ G+ ++ + Sbjct: 105 EDVYPFAADFIGDDDAFLLTVRGDSMKNAGILEGDLLIVRRQNTAQNGEIVVAL-LEEEA 163 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K ++I L N Y + + +++ Sbjct: 164 TVKRYFRES-QAIRLQPENEAYEPIY--TRHCQILGKVV 199 >gi|52842310|ref|YP_096109.1| prophage repressor CI-like [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629421|gb|AAU28162.1| hypothetical prophage repressor CI-like [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 234 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 13/209 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +KI + I LT L L + + +R +R P E I ++ A Sbjct: 13 EKIGQRIQEERIAKGLTRKALEELTDDLKQSRISNWERG-----DRTPGPEEIKQLARAL 67 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + L+ L + L + + + I S Sbjct: 68 DISPAYLMCLTDEKRPKKIPGLGSLVPLLDHQQACDPKGFIQRVRNEHNSDEISFIPISS 127 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKV 184 + + K +D SM P R DILI++ +++ G + +++ + Sbjct: 128 ELSTR--LGENAFALKMKDESMHPELRVNDILIIDPNSELHPGSLVAAQLNEENEVIVRR 185 Query: 185 LISRRGRS----IDLMSLNCCYPVDTVEM 209 +L + N + ++ Sbjct: 186 YKQLTLSKEFNPFELRAENDNWGNIKIDK 214 >gi|332363975|gb|EGJ41754.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 225 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSALYTYPLLTPPHKKEVDKLASRLLERQRKVSSLTAYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYGDLFAPYEDQPSIVGIVV 217 >gi|297622579|ref|YP_003704013.1| transcriptional repressor, LexA family [Truepera radiovictrix DSM 17093] gi|297163759|gb|ADI13470.1| transcriptional repressor, LexA family [Truepera radiovictrix DSM 17093] Length = 204 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 8/172 (4%) Query: 49 RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFF 104 + R + + N L + R + + P+ + G Sbjct: 19 KERTGRSPELSVFARDLNIHYVSLRQHLEALHRKGYVIFESRGRGQSPRLELPARATGVP 78 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 G P G + PE P G Q + SM L + GDI++ + Sbjct: 79 VLGSIPAGPLSEALAEPEGFLPLTGA----RQQFALRVSGDSMADLIQDGDIVLFRKGMP 134 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G+ ++ ++ K + +++ L N YP V +++ Sbjct: 135 TRSGEICAVRVGNSEVTLKYVDHHEPQTVTLRPHNPQYPTVAVPATEVHIEG 186 >gi|218886195|ref|YP_002435516.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757149|gb|ACL08048.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 249 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 57/235 (24%), Gaps = 34/235 (14%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT------- 65 ID + + LA AG+ + K R+PS ++ ++ Sbjct: 19 IDALHSVGGV--KRLAEIAGVSERTVYAWKNGE-----RFPSRTNLARLTEHLDRIPAVS 71 Query: 66 -------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT- 117 L + + + E + G Sbjct: 72 GLQPHRRGLHERMLRPYGEAPRASAGQPEVPEEVRRLAEEFVLVDRAEARPSAGGGSLQT 131 Query: 118 -----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 G T + SM GD++++N DR+ Sbjct: 132 GGHPQEQHAFRLDWVLGRARSTTGLCLMEVMGRSMERTLHDGDLVLVNQHDHALAEDRIY 191 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMSD----IEWIARILWA 221 + +I K N Y ++ D E I R++WA Sbjct: 192 VVRVQDEIYIKRFSR-TPGRYHFRGDNPEFAYQDIEIDPRDEALQWEVIGRVIWA 245 >gi|330961042|gb|EGH61302.1| repressor protein c2 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 203 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 67/213 (31%), Gaps = 28/213 (13%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET------IC 70 E ++ +A + G+ P + R P E I + L Sbjct: 1 METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILATSIPW 55 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 Q + + P++ + +G +P G +T + + Sbjct: 56 QESAMDNVAPAVQPSRFYRYPVISWVEAGGWSEAVE-PYPAGY-SDTFEISD-------- 105 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 Y + + + SM +G ++++++ ++ G ++ P + + K L Sbjct: 106 YKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGLEPTAGKLVIAKLPESNEATFKKL 165 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L LN YP V D + I I Sbjct: 166 VED-AGRFFLKPLNPAYPTLPVT-EDCKLIGVI 196 >gi|227510233|ref|ZP_03940282.1| LexA repressor [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513162|ref|ZP_03943211.1| LexA repressor [Lactobacillus buchneri ATCC 11577] gi|227524377|ref|ZP_03954426.1| LexA repressor [Lactobacillus hilgardii ATCC 8290] gi|227083543|gb|EEI18855.1| LexA repressor [Lactobacillus buchneri ATCC 11577] gi|227088608|gb|EEI23920.1| LexA repressor [Lactobacillus hilgardii ATCC 8290] gi|227189885|gb|EEI69952.1| LexA repressor [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 209 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 53/223 (23%), Gaps = 37/223 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES 57 KI I P+ + L TS N+ ++ G + PS Sbjct: 8 KQYKILHYIWEKVNDKGYPPTVREIGEAVNLSSTSTVHGHINRLQKKGYIVK--DPSKPR 65 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 ++ + P P + + + Sbjct: 66 ALEV------------------TAAGMELLGIAPKQKQIPILGTVTAGEPILAVEDATDY 107 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P + + + SM+ GD +++ + GD ++ Sbjct: 108 FPLPPQLAQD------DQTLFMLQIRGESMINAGILNGDYVVVRKQAYADNGDIVIAMTD 161 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N + + + +++ Sbjct: 162 ENEATCKRFFKESD-HFRLQPENDTMAPIILTK--VSILGKVV 201 >gi|125717479|ref|YP_001034612.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497396|gb|ABN44062.1| Transcriptional regulator (XRE family), SOS-response transcriptional repressors (RecA-mediated autopeptidases), putative [Streptococcus sanguinis SK36] Length = 225 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT S + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + L +K+ + + S + S G + Sbjct: 57 QESYFVDETSALYTYPLLTLPHKKEVDQLASRLLERQRKISSLTAYKVLSVELAAGLGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|330878374|gb|EGH12523.1| repressor protein c2 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963865|gb|EGH64125.1| repressor protein c2 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 203 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ +A + G+ P + R P E I ++L I Sbjct: 1 METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRLLGELGLPILATSIPS 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134 G + Y P S P S I Y + Sbjct: 56 SEPGMHNVAPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109 Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189 + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V D + I I Sbjct: 169 AGRYFLKPLNPAYPTLPVT-EDCKLIGVI 196 >gi|169830931|ref|YP_001716913.1| SOS-response transcriptional repressor, LexA [Candidatus Desulforudis audaxviator MP104C] gi|169637775|gb|ACA59281.1| SOS-response transcriptional repressor, LexA [Candidatus Desulforudis audaxviator MP104C] Length = 196 Score = 84.8 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 53/217 (24%), Gaps = 41/217 (18%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKILA 63 +I + I + E PS + + GL P + + +R G R T S Sbjct: 9 QILDCILKHLEDKGYPPSVREIGKATGLRSPATVLSYLRRLEDRGFLRRDQTASRA---- 64 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + P + G G V E Sbjct: 65 ----------------------------VSVGPRLRAVAVPLLGRIAAGQPHPAVEYRED 96 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM GD++++ GD + G+ Sbjct: 97 VLLLPAELTGSGECFALRVRGESMVEAGILDGDLVVVRRQPTAENGDIVAAL-VAGEATV 155 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N + + +++ Sbjct: 156 KRFYR-EDGRIRLQPENRTMRPIF--TDEAAILGKVV 189 >gi|326574451|gb|EGE24393.1| peptidase S24-like protein [Moraxella catarrhalis 101P30B1] Length = 233 Score = 84.8 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 69/229 (30%), Gaps = 16/229 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + LT + + GL +++++ + + R +F + Sbjct: 2 ELKNRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAVELAHLFGV-DVHW 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WNTVG 119 + +D T + + L F+ F G T Sbjct: 61 LISGEGEMTKNNDKLTPITEWDDSTPLDDDEV-GIPFYKDIAFACGYGAVNDDVTHETRK 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + + + +D SM P + GD + +++ + R+ Sbjct: 120 LRMGKRTLSNLGVMSENAFAVTARDDSMTPYVQDGDTIYIDTGRKEIKDGRIFAIRFGEL 179 Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 + K L + ++S N +P + + E I + S Sbjct: 180 CLCKRLYRLPDGGVRIVSDNAAEFPEQIATKQQISDGEFEVIGWVWSVS 228 >gi|326318306|ref|YP_004235978.1| putative phage repressor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375142|gb|ADX47411.1| putative phage repressor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 227 Score = 84.8 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 66/227 (29%), Gaps = 18/227 (7%) Query: 6 HKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 H+ +E ++T S +AR G P + + R S K Sbjct: 2 HESALRLYQAASELKDVTGQSAVARLLGESPQNIKNWE-------MRGVSKAGALKAEEL 54 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---- 120 + LL + + + ++ G++ V Sbjct: 55 IGCSAAWLLTGDRQPAPAHRRPAQPAAVTTSGSVTVPQLANAASMGAGSEMAHEDVMVGR 114 Query: 121 ----PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 P + SM P + GD+L++++ ++ D + + Sbjct: 115 LTLSPTWIGRTLRGLSTPENLRFIHAYGDSMEPTFLDGDVLLVDAGVRTVEVDGVYVLGA 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARILWA 221 + K + R + ++ S N V +E + +++W Sbjct: 175 QNRLFIKRVRQRLDGAYEISSDNPTVKTVDVLDGKHTVEILGKVIWI 221 >gi|241662841|ref|YP_002981201.1| LexA repressor [Ralstonia pickettii 12D] gi|240864868|gb|ACS62529.1| SOS-response transcriptional repressor, LexA [Ralstonia pickettii 12D] Length = 216 Score = 84.8 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 66/216 (30%), Gaps = 23/216 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I + +R P + +A + G + + E Sbjct: 1 MATLTPRQQQIYDLIRQTTQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA R + + L G G+ Sbjct: 45 EHLRALARKGVIELTPGASRGIRLRAAGETAQHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + D K + SM GD+L + A + G ++ + Sbjct: 105 AAEHIDRQYQVDPSLFSAQPDFLLKVRGMSMRDAGILDGDLLAVQRASEAPNGKIVVAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + GR ++L++ N + V++ Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198 >gi|260578879|ref|ZP_05846785.1| LexA repressor [Corynebacterium jeikeium ATCC 43734] gi|258603026|gb|EEW16297.1| LexA repressor [Corynebacterium jeikeium ATCC 43734] Length = 267 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 52/220 (23%), Gaps = 11/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I E I PS +A GL TS +E R + + Sbjct: 45 QRRILEVIRDSTIIRGYPPSIREIADAVGLHSTSSVSYHLTQLEKRGYLRRDGKRPRAVD 104 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----VFPTGNKWNTVG 119 QL + + + + G Sbjct: 105 VRAFDGGQLTNESTKKNAGSPQPTSAAIPEPTTEGETMPEATYVPVVGQIAAGAPILAEQ 164 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E P + + SM GD +++ S GD + G Sbjct: 165 NVEAHFPLPQELVGNGELFLLQVVGESMHDAGIFNGDWVVVRSQSVAEFGDFVAAMID-G 223 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + L+ N + + + ++ Sbjct: 224 EATVKEFQKDADG-LWLIPHNPLFEPI--PAEEATILGKV 260 >gi|72162551|ref|YP_290208.1| peptidase S24, LexA repressor [Thermobifida fusca YX] gi|123733498|sp|Q47MY4|LEXA_THEFY RecName: Full=LexA repressor gi|71916283|gb|AAZ56185.1| peptidase S24, LexA repressor [Thermobifida fusca YX] Length = 252 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 22/223 (9%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + + ++ + I R PS + GL S + ++ + ++ Sbjct: 41 PTLTERQRSVLNVIHRYVRERGYPPSIREIGEAVGLSSPSSVAHQLKVLQRKGYLHRDQN 100 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + G + ++ +IPLL +G + + Sbjct: 101 RPRAVEIRIPHKTSGRTRRELGGLSGSEEIVDIPLLGRIAAGGPI------LAEEHVEDV 154 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + +P + SM+ GD++++ N GD + Sbjct: 155 LSLPRQLVG-------EGTLFMLTVVGDSMIDAAIADGDLVVVRQQPDANNGDIVAAL-L 206 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + KV R + L+ N Y + +++ Sbjct: 207 GDEATVKVFKRDR-EHVWLLPRNSAYDPI--NGDSATILGKVV 246 >gi|291550381|emb|CBL26643.1| SOS-response transcriptional repressor, LexA [Ruminococcus torques L2-14] Length = 204 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 57/221 (25%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 K+I E I P+ + L TS + + G R P+ Sbjct: 9 KQKEILEYIKDQILTRGFPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + P + N + Sbjct: 69 EILDDNFNLTRREMVN--------------------IPIIGRVAAGEPLLAEQNIEDYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P Y Q + Q SM+ GD +I+ G++++ Sbjct: 109 IPVE-------YMPNKQTFMLQVQGESMINAGILSGDYVIVEQTPSAENGEQVVALI-ED 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N Y + D+ + +++ Sbjct: 161 GATVKTFYREE-GIIRLQPENDAYDPIILT--DVTILGKVI 198 >gi|237738942|ref|ZP_04569423.1| LexA repressor [Fusobacterium sp. 2_1_31] gi|229423542|gb|EEO38589.1| LexA repressor [Fusobacterium sp. 2_1_31] Length = 219 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 70/215 (32%), Gaps = 13/215 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ +H + GLA+K L T +K ++ S I +I+ + Sbjct: 4 GTTLKKIRLKHKDSLRGLAKKINLHFTFVDKVEKGTAP-----ISNNFIERIVEVYPDEE 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP-HN 128 L + + K+ + S G G + + P+ P Sbjct: 59 KILKKEYLKENLP-KVFSKDESIKILEDSEVLNLPVYGKASAGRGYLNMDKPDYYMPITK 117 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL-IS 187 G +++ + SM P G+ +++ +++ + + K + + Sbjct: 118 GDFSL--NSFFVEITGNSMEPTLEDGEYALVDPNNTAYVKNKIYVVTYNDEGYIKRVEVK 175 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + + I L S N Y + + R++ Sbjct: 176 DKKKVITLKSDNPDYDDIDISEEMQEYFKINGRVV 210 >gi|212703266|ref|ZP_03311394.1| hypothetical protein DESPIG_01308 [Desulfovibrio piger ATCC 29098] gi|212673310|gb|EEB33793.1| hypothetical protein DESPIG_01308 [Desulfovibrio piger ATCC 29098] Length = 227 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 12/229 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKI 61 S + I + + T LA+ A ++ + + + + + R T +S +KI Sbjct: 1 MESGNYLRSIIAGLKGKKFETYRDLAQMANVNQGNLSSFMKPDGDPKRRETMTFDSAWKI 60 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L A + L + R E + + +G P + + Sbjct: 61 LNALGLKLPTLEQQEATIRRPAPNAPVERADADGSVAI-HVYALAGAGPAFDLEENDPLA 119 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDI 180 IR P + + SM + G ++ ++ G+ ++ + Sbjct: 120 TIRVPLEYAMQCDS---ALLVKGDSMAWTIKSGGVVGVIRRNFDFVSGEVYAVRLPYEGL 176 Query: 181 VAKVLISRRG-RSIDLMSLNCC---YPVDTVEMSDIE--WIARILWASQ 223 K +I + S N YP + +++ + R++W Q Sbjct: 177 SIKRVIVDAASGEYIIRSDNPDKEKYPDRRLSITEYADIILGRVVWVWQ 225 >gi|160943854|ref|ZP_02091085.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii M21/2] gi|158445028|gb|EDP22031.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii M21/2] gi|295103055|emb|CBL00599.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii SL3/3] Length = 206 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 29/224 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59 M+ S + E+ L+ LAR+ G +S K ++ + E + Sbjct: 1 MSDLS-----TRVRLRREQLGLSQEELARRMGYRSRSSITKLEKGINDLPQS--KVEELA 53 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L T + L + + + S + G + N +G Sbjct: 54 QALETTPAALLGLDAPCA--CPPGFEPLPTMVQVPLIGSIACGTPIT---AEQNIECYIG 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 VP D SM P GDI+ + +V G+ ++ + Sbjct: 109 VPAAWHA----------DFALTCHGDSMSPTICNGDIVCIRCQPEVEQGEIAAVR-VGEE 157 Query: 180 IVAKVLISRRGRSIDLMSLNCCY-PVDTV---EMSDIEWIARIL 219 K + G ++ L++ N P ++S++ + + Sbjct: 158 ATLKHFHRQ-GDAVMLLADNAAVCPPMFYAGEQLSELHIEGKAV 200 >gi|239623856|ref|ZP_04666887.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521887|gb|EEQ61753.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 204 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 56/221 (25%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I E I + P+ + L TS S +E + R P+ Sbjct: 9 KQQEILEYIKETILKKGYPPAVREICEAVHLKSTSSVHSHLSALEEKGFIRRDPTKPRTI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL T + + P + + Sbjct: 69 EILDDTFNFNRREMVN--------------------IPLIGTVAAGEPILAEERIEDYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 P P+ + K + SM+ GD LI+ G+ ++ Sbjct: 109 FPAEALPN-------AETFMLKVKGESMIGAGILPGDQLIIEQCPTALNGEIVVALVD-D 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N +E + +++ Sbjct: 161 SATVKRFYKEK-GHYRLQPENEAMDPII--TDHVEILGKVI 198 >gi|212696814|ref|ZP_03304942.1| hypothetical protein ANHYDRO_01377 [Anaerococcus hydrogenalis DSM 7454] gi|212676104|gb|EEB35711.1| hypothetical protein ANHYDRO_01377 [Anaerococcus hydrogenalis DSM 7454] Length = 217 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 20/220 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + T + +K G+ + + + I+ E + L T Sbjct: 2 KLADRIKYKRNQLGKTLEEVGQKVGVTKATIQRYENGNIQNIPSD-KIELLAAALNTTPA 60 Query: 68 TICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + D + + + + P V N Sbjct: 61 YLMGWEDDKDKEKDKIDLSNIPGVIPVKKIIKIPILGHIQCGKPVMSVENYEGYFTADPE 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM+ +GD++ QV G + Sbjct: 121 MIN---------SDFCLYADGDSMIDAGIHEGDLVFFKQTPQVENGSIAAVFID-DTTTL 170 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 K + + I L N Y + + + I + ++ Sbjct: 171 KRFYKKENQ-IILQPENKSYSPIIINLDESTNIRILGEMV 209 >gi|116492636|ref|YP_804371.1| XRE family transcriptional regulator [Pediococcus pentosaceus ATCC 25745] gi|122265900|sp|Q03FU3|LEXA_PEDPA RecName: Full=LexA repressor gi|116102786|gb|ABJ67929.1| Transcriptional regulator, xre family [Pediococcus pentosaceus ATCC 25745] Length = 209 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 24/220 (10%), Positives = 52/220 (23%), Gaps = 39/220 (17%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKS-KRFGIEGRNRWPSTESIFK 60 + E I + P+ + GL TS ++ K +E P + K Sbjct: 12 VLEYIYKTVNAQGYPPTVREIGSAIGLSSTSTVHGHIDRLQKNGFLEKDPTKPRALEVTK 71 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + P + + V Sbjct: 72 L---------------------GLDALGVQDKNPTIPLLGVVTAGEPILAVEEATDFFPV 110 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + SM+ GD +I+ + G ++ + Sbjct: 111 PPEYENDS------SNLFMLTIRGESMINAGILSGDQVIVRKQSTADNGTIVIAMTDENE 164 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N ++ + + +++ Sbjct: 165 ATCKRFYRESD-HIRLQPENDTMAPIILDN--VTILGKVV 201 >gi|225155121|ref|ZP_03723616.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase)-like protein [Opitutaceae bacterium TAV2] gi|224804068|gb|EEG22296.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase)-like protein [Opitutaceae bacterium TAV2] Length = 215 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 17/213 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATNET 68 + + E LT L ++ G K + E++ + L TN Sbjct: 7 GKQLKEWRESAGLTQEELGQRLGYTREWIGKLESNDRPISANIHLKLETLKRELEFTNRG 66 Query: 69 I-CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + +EIP++ + G + +P Sbjct: 67 ELRENPAPYGVGHPLRDLAPREIPVISWAH-------------AGEAVSYEEIPRDWQNT 113 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + SMLP +R GD++++ ++ ++ K + +V K+L + Sbjct: 114 IYTSCATPHAFAITVEGDSMLPDFRPGDVVVVMPEVEPRNHCPVVAKLKNDGVVLKILNA 173 Query: 188 RRG--RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R+I L S+N Y T D WI + Sbjct: 174 SGPEKRTIVLTSINPVYQPLTYTPEDFHWIWPV 206 >gi|330984863|gb|EGH82966.1| repressor protein c2 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 218 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I +AI + +A + G+ ++ + + E+++ + Sbjct: 1 MTRQERIAKAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121 AT L E L P+ S + G+ V P Sbjct: 53 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 109 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209 >gi|326796048|ref|YP_004313868.1| phage repressor [Marinomonas mediterranea MMB-1] gi|326546812|gb|ADZ92032.1| putative phage repressor [Marinomonas mediterranea MMB-1] Length = 236 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 59/236 (25%), Gaps = 36/236 (15%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +ID + LA+K G + NK P E + I A T Sbjct: 11 LHSIDIQRHGAG---AWLAKKTGTTVKAANKWLNGES-----HPRREKVETIAALTKVRT 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-------- 121 L ++ K L P + + + ++ +P Sbjct: 63 EWLEYGTGL-----MRETKSHMQLNEPLADYTVSSIAQPSRAHHSTQSIELPYLKESELT 117 Query: 122 ------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 S SM P+ ++ +++ Sbjct: 118 TTQRPTSSEAMIFNASLLEHAGIEPANALAFSLSGDSMAPVLPNNALVAVDTEDTSITDG 177 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWAS 222 ++ + + L ++ + S N + + + I R+ W S Sbjct: 178 KIYAFVHGELLRVRYLYRLPYGALSVRSSNPAIEDEALTKDQVDNIRIIGRVFWYS 233 >gi|325570326|ref|ZP_08146164.1| transcriptional repressor LexA [Enterococcus casseliflavus ATCC 12755] gi|325156696|gb|EGC68871.1| transcriptional repressor LexA [Enterococcus casseliflavus ATCC 12755] Length = 209 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 57/222 (25%), Gaps = 39/222 (17%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESI 58 +I + I P+ + L TS ++ ++ G+ R P+ Sbjct: 12 QIEILKFIHTRVTEKGYPPTVREIGEAVQLSSTSTVHGHLSRLEKKGLI--LRDPTKPRA 69 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++ T+ EK P + + + Sbjct: 70 IEL--------------------TSSGLEKIDVQPASIPMLGVVTAGEPILAVEDASDFF 109 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + SM+ GD +I+ GD ++ Sbjct: 110 PIPPDLANST------GSLFMLTIRGESMINAGILDGDQVIVRKQQSAQNGDIVIAMTDE 163 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + I L N + D+ + ++ Sbjct: 164 DEATCKRFYKEKN-YIRLQPENDYLEPIILP--DVTILGLVV 202 >gi|222054633|ref|YP_002536995.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563922|gb|ACM19894.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 209 Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 69/212 (32%), Gaps = 19/212 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I + + ++T A G+ + +R + S I + + Sbjct: 9 RMGLRIKEIRQAKDMTQKEFADSLGIVQGFLSGVERG-----KKNVSDTLIIALCHSYGI 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L R + + + F F + + + +P+ Sbjct: 64 NKEWLKTGYGEKFRELQIEASRPSNVPLFKKIPQDFPH--FFVKEDICDYLSLPQGAEGS 121 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 I+++ M P GD++++++ ++ D +L+ R G+ + + Sbjct: 122 YAIFSV----------GDFMAPTICDGDLVVISTECEIENRDIVLVNNRWGEAILRRY-R 170 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L N Y + S ++ + +++ Sbjct: 171 IVDSDVFLSPDNRAYVPFKKD-SKLKMLGKVV 201 >gi|68536183|ref|YP_250888.1| LexA repressor [Corynebacterium jeikeium K411] gi|123734575|sp|Q4JV87|LEXA_CORJK RecName: Full=LexA repressor gi|68263782|emb|CAI37270.1| LexA repressor [Corynebacterium jeikeium K411] Length = 267 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 52/220 (23%), Gaps = 11/220 (5%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I E I PS +A GL TS +E R + + Sbjct: 45 QRRILEVIRDSTIIRGYPPSIREIADAVGLHSTSSVSYHLTQLEKRGYLRRDGKRPRAVD 104 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----VFPTGNKWNTVG 119 QL + + + + G Sbjct: 105 VRAFDGGQLTNESTKKNAGSPQPTSAAIPEPTTEGETMPEATYVPVVGQIAAGAPILAEQ 164 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E P + + SM GD +++ S GD + G Sbjct: 165 NVEAHFPLPQELVGNGELFLLQVVGESMHDAGIFNGDWVVVRSQSVAEFGDFVAAMID-G 223 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + L+ N + + + ++ Sbjct: 224 EATVKEFQKDADG-LWLIPHNPLFEPI--PAEEATILGKV 260 >gi|288871683|ref|ZP_06118583.2| repressor LexA [Clostridium hathewayi DSM 13479] gi|288862447|gb|EFC94745.1| repressor LexA [Clostridium hathewayi DSM 13479] Length = 241 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 51/218 (23%), Gaps = 31/218 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I E I + P+ + L TS S S + L Sbjct: 44 KQQEILEYIKETILKKGYPPAVREICEAVHLKSTS----------------SVHSHLETL 87 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P + N N +P Sbjct: 88 EEKGYIRRDPTKPRTIEIIDDCFNLTRREVVNVP-LLGTVAAGVPLLAEENIENYYPIPV 146 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P+ + SM+ GD LI+ G+ ++ Sbjct: 147 ELLPN-------ADTFMLNVKGNSMINAGIFDGDQLIVERCSTAYDGEIVVALVD-DSAT 198 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V+ +E + +++ Sbjct: 199 VKRFYK-EDGYYRLQPENDEMEPILVDH--LEILGKVI 233 >gi|238916939|ref|YP_002930456.1| repressor LexA [Eubacterium eligens ATCC 27750] gi|238872299|gb|ACR72009.1| repressor LexA [Eubacterium eligens ATCC 27750] Length = 211 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 54/218 (24%), Gaps = 31/218 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I E I PS + + L TS + ES+ K Sbjct: 14 KQSEILEYIKSQILNKGYPPSVRDICQAVNLKSTSSVHAH------------LESLEK-- 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P + N +P Sbjct: 60 --NGYIRRDPTKSRTIEIIDDNFNLSRREVVNIP-LLGQVAAGQPLLAVENITEYFPIPS 116 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 Y + K + SM+ + +GD +I+ + G+ ++ Sbjct: 117 E-------YMPGGEVFMLKVKGDSMINMGIYEGDQIIVRKQNTASNGEVIVALVD-DSAT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N V D E + +++ Sbjct: 169 VKRFYK-ENGHIRLQPENDFMDPIIV--DDCEILGKVI 203 >gi|228968095|ref|ZP_04129100.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar sotto str. T04001] gi|228791586|gb|EEM39183.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar sotto str. T04001] Length = 191 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 R+ ++ + LA + + T+F+ + + R + + T + + Sbjct: 1 MNRNGISQTDLANELNIPETTFSNWMQ--AKTYPRPDKIQMLADYFKITRSDLTE----E 54 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 + +IP+L GS + + + Sbjct: 55 EQNYDEECSISVQIPVLGAIACGSPIL-------AEQNYEEYRCEAA------DHLPSGK 101 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSIDL 195 K + SM P G +++ V G+ ++ + K + + G I L Sbjct: 102 LLYLKAKGNSMEPTIPNGAYVMIREQPNVESGEIAAVLVNGDTEATLKRIKKQ-GNIIML 160 Query: 196 MSLNCCYPVDTVEMSD-IEWIARIL 219 M N + ++ ++ + I + + Sbjct: 161 MPDNPTHNPMIIDENNPAKIIGKAI 185 >gi|297243707|ref|ZP_06927638.1| SOS-response transcriptional repressor (RecA-mediated autopeptidase) [Gardnerella vaginalis AMD] gi|296888458|gb|EFH27199.1| SOS-response transcriptional repressor (RecA-mediated autopeptidase) [Gardnerella vaginalis AMD] Length = 244 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 53/203 (26%), Gaps = 8/203 (3%) Query: 20 HNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 H PS + GL S K + +E + + + + + +I + Sbjct: 41 HGFPPSFREIGEAVGLRSPSSVKHQLRTLEDKGILRINANKGRAIEILDNSIVENNSNNK 100 Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 + ++ + S G G E Sbjct: 101 INKNSS-RVANISAYESDSVINSRDVPLVGRIAAGAPITAEQHIEDVMRLPERLTGTGNL 159 Query: 138 TRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM+ GD +++ + GD + + K + L+ Sbjct: 160 FMLEVHGDSMIDAAICDGDYVVVREQHEAVNGDIVAALLD-NEATVKTF-RNDHGHVWLI 217 Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219 N Y + S + +++ Sbjct: 218 PHNPAYSPI--DGSHATIMGKVV 238 >gi|172048106|sp|A5UQF5|LEXA_ROSS1 RecName: Full=LexA repressor Length = 218 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 21/218 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I+ + H PS + + TS +E + ++ Sbjct: 11 QRDILGFIEEFTQEHGYPPSIREIQDGLRISSTSVVAYNLRALESKG----------LID 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + + +PLL +G T + VP Sbjct: 61 RDGRVSRGIKIKNMTPMPLSRAQGGRVPLLGVITAGQPLPNPEDTSTT--AVEMIEVPVD 118 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDIV 181 +P + K + SM+ GDI+++ + G + + + Sbjct: 119 LAPPEKL----QNVYALKVRGHSMIDALIDDGDIVLMRYQETADNGQMVAVRIEDDNAVT 174 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + L N V+ + + R++ Sbjct: 175 LKRFYR-EGDKVRLQPANVTMEPIYVDAARVHIQGRVV 211 >gi|301381518|ref|ZP_07229936.1| repressor protein c2 [Pseudomonas syringae pv. tomato Max13] gi|302062600|ref|ZP_07254141.1| repressor protein c2 [Pseudomonas syringae pv. tomato K40] gi|302132242|ref|ZP_07258232.1| repressor protein c2 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331017610|gb|EGH97666.1| repressor protein c2 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 203 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ +A + G+ P + R P E I ++L I Sbjct: 1 METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRLLGELGLPILATSIPS 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134 G + Y P S P S I Y + Sbjct: 56 SEPGMQNVAPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109 Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189 + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V D + I I Sbjct: 169 AGRYFLKPLNPAYPTLPVT-EDCKLIGVI 196 >gi|220932927|ref|YP_002509835.1| putative prophage repressor [Halothermothrix orenii H 168] gi|219994237|gb|ACL70840.1| putative prophage repressor [Halothermothrix orenii H 168] Length = 200 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 23/216 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +K + + ++ + NLT L K L + +R R PS + + I N Sbjct: 2 EKFGQKLRKLRKEKNLTLRELGNKLNLSFSLLAMYERGE-----RTPSLDKLLLIADFFN 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + LLD + + E Sbjct: 57 VSTDYLLDHSPLEDLNRKLGIIPYLDNNNFNGDDNSIICE---------------EKLIN 101 Query: 127 HNGIYAIQTQDTRHKTQ-DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + +I + K + D + GD++++ + G + + ++ + + Sbjct: 102 YYSRNSINQKYFYLKVEKDDMVNSRIHPGDLVLIRRQKHLKDGAVGVAIYK-DELYIRRV 160 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 L + N Y +++ I +I+ Sbjct: 161 YK-NDNLYILQADNPDYTPLFASQKELDIIGQIIMV 195 >gi|213967654|ref|ZP_03395801.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1] gi|213927430|gb|EEB60978.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1] Length = 229 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 69/225 (30%), Gaps = 20/225 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++K +E ++ E ++ +A + G+ P + R P E I + Sbjct: 11 MIRRMNRKWYEVARQVMETQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINR 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L I G + Y P S Sbjct: 66 LLGELGLPILATSIPSSEPGMQNVAPTVQPSRFYRYPVISWVEAGGWSEAVE------PY 119 Query: 121 PEIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-I 173 P S I Y + + + SM +G ++++++ I+ G ++ Sbjct: 120 PAGYSDTFEISDYKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAK 179 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 P + + K L+ L LN YP V D + I I Sbjct: 180 LPESNEATFKKLVED-AGRYFLKPLNPAYPTLPVT-EDCKLIGVI 222 >gi|28870671|ref|NP_793290.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000] gi|71735052|ref|YP_275363.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A] gi|213969031|ref|ZP_03397171.1| LexA repressor [Pseudomonas syringae pv. tomato T1] gi|257484693|ref|ZP_05638734.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625355|ref|ZP_06458309.1| LexA repressor [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298487639|ref|ZP_07005680.1| SOS-response repressor and protease LexA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385408|ref|ZP_07233826.1| LexA repressor [Pseudomonas syringae pv. tomato Max13] gi|302061395|ref|ZP_07252936.1| LexA repressor [Pseudomonas syringae pv. tomato K40] gi|302129985|ref|ZP_07255975.1| LexA repressor [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999577|sp|Q87ZB9|LEXA1_PSESM RecName: Full=LexA repressor 1 gi|28853919|gb|AAO56985.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000] gi|71555605|gb|AAZ34816.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A] gi|213926330|gb|EEB59885.1| LexA repressor [Pseudomonas syringae pv. tomato T1] gi|298157731|gb|EFH98810.1| SOS-response repressor and protease LexA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323877|gb|EFW79961.1| LexA repressor [Pseudomonas syringae pv. glycinea str. B076] gi|320328014|gb|EFW84019.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4] gi|330867763|gb|EGH02472.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875602|gb|EGH09751.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4] gi|330876688|gb|EGH10837.1| LexA repressor [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330888871|gb|EGH21532.1| LexA repressor [Pseudomonas syringae pv. mori str. 301020] gi|330986340|gb|EGH84443.1| LexA repressor [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011237|gb|EGH91293.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331015782|gb|EGH95838.1| LexA repressor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 202 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 62/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E + E L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEARPDESSLPVI-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + + + + SM + GD+L +++ + G ++ + Sbjct: 94 AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ D Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187 >gi|300902558|ref|ZP_07120535.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|301301996|ref|ZP_07208129.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|300405371|gb|EFJ88909.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300842548|gb|EFK70308.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|315253734|gb|EFU33702.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] Length = 230 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 17/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + N+ + LA G+D + ++ + G+ + + +++ I + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57 Query: 68 TICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 I L +E + + +G+ G+ + + E Sbjct: 58 DIADLFTSDVKSNTVCKNSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117 Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R+ + + SM P GD++ ++ +I GD + + Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y + ++L SQ Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222 >gi|298253523|ref|ZP_06977313.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase) [Gardnerella vaginalis 5-1] gi|297532290|gb|EFH71178.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase) [Gardnerella vaginalis 5-1] Length = 244 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 53/203 (26%), Gaps = 8/203 (3%) Query: 20 HNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 H PS + GL S K + +E + + + + + +I + Sbjct: 41 HGFPPSFREIGEAVGLRSPSSVKHQLRTLEDKGILRINANKGRAIEILDNSIVENNSNNK 100 Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 + ++ + S G G E Sbjct: 101 INKNSS-RVANISAYESDSVINSRDVPLVGRIAAGAPITAEQHIEDVMRLPERLTGTGNL 159 Query: 138 TRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM+ GD +++ + GD + + K + L+ Sbjct: 160 FMLEVHGDSMIDAAICDGDYVVVREQHEAVNGDIVAALLD-NEATVKTF-RNDHGHVWLI 217 Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219 N Y + S + +++ Sbjct: 218 PHNPAYSPI--DGSHATIMGKVV 238 >gi|283783054|ref|YP_003373808.1| repressor LexA [Gardnerella vaginalis 409-05] gi|283441910|gb|ADB14376.1| repressor LexA [Gardnerella vaginalis 409-05] Length = 244 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 53/203 (26%), Gaps = 8/203 (3%) Query: 20 HNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 H PS + GL S K + +E + + + + + +I + Sbjct: 41 HGFPPSFREIGEAVGLRSPSSVKHQLRTLEDKGILRINANKGRAIEILDNSIVEKNSNNK 100 Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 + ++ + S G G E Sbjct: 101 INKNSS-RVANISAYESDSVINSRDVPLVGRIAAGAPITAEQHIEDVMRLPERLTGTGNL 159 Query: 138 TRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM+ GD +++ + GD + + K + L+ Sbjct: 160 FMLEVHGDSMIDAAICDGDYVVVREQHEAVNGDIVAALLD-NEATVKTF-RNDHGHVWLI 217 Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219 N Y + S + +++ Sbjct: 218 PHNPAYSPI--DGSHATIMGKVV 238 >gi|134095348|ref|YP_001100423.1| LexA repressor [Herminiimonas arsenicoxydans] gi|172044149|sp|A4G713|LEXA_HERAR RecName: Full=LexA repressor gi|133739251|emb|CAL62300.1| LexA repressor [Herminiimonas arsenicoxydans] Length = 219 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 58/213 (27%), Gaps = 15/213 (7%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + ++I I E P+ A L S N ++ +++ Sbjct: 1 MIKLTARQEQILNLIRDAIENTGFPPTRAEIAAELGFRSANAAEEH----------LQAL 50 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + A G T + L P G G+ Sbjct: 51 ARKGAIEISPGTSRGIRLRDMGGTRSDRSGAQLSLPHPALMQLNLPLVGRVAAGSPILAQ 110 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + D K + SM GD+L + G ++ + Sbjct: 111 EHIEATYNVDKSLFSAKPDFLLKVRGMSMRDAGILDGDLLAVKKIDSAKNGQIVVAR-LG 169 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G I+L+ N + V++ Sbjct: 170 DDVTVKRY-KKTGSLIELLPENPDFQPIRVDLE 201 >gi|148547818|ref|YP_001267920.1| LexA repressor [Pseudomonas putida F1] gi|148511876|gb|ABQ78736.1| SOS-response transcriptional repressor, LexA [Pseudomonas putida F1] Length = 205 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K+ I+E I H PS +A + G S + Sbjct: 4 MDTLTPKRRAIFEFIRERIAEHGQPPSLADIATRFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + A + + + G + + +L P G P G + Sbjct: 48 ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILEIPVLGQVA----AGAPIGPDLD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 + + +T D K + SM+ GD++ + G ++ + Sbjct: 101 IHE----QLLLDPSLFRRTPDYLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + G + L+ N Y V+ Sbjct: 157 D-GEVTIKRLQRQ-GGTYRLLPRNPAYAPIDVQPEQ 190 >gi|330949976|gb|EGH50236.1| peptidase [Pseudomonas syringae Cit 7] Length = 218 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI L +A G+ ++ + + E+++ + Sbjct: 1 MTRQERIARAIAA----SGLKKGEIAALCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121 AT L L P S + G+ V P Sbjct: 53 RATGFRAEWLAIGEGPQKAPAFD---ANVALIDQPKMSFRYPVISWVSAGSWEEAVQPYP 109 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMLILVDTEADVQPGRLVIAKL 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209 >gi|300717777|ref|YP_003742580.1| Repressor protein cI [Erwinia billingiae Eb661] gi|299063613|emb|CAX60733.1| Repressor protein cI [Erwinia billingiae Eb661] Length = 232 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 56/209 (26%), Gaps = 15/209 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA G+ + + R PS E I KIL + Sbjct: 23 KSRMKEMEITQETLAEHLGITKGAVSHWLNA-----RREPSIEDIAKILRLLGM--KEFT 75 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPHNGIYA 132 + + + +I Sbjct: 76 VNSDGTIAPSGSISNVSIAGPYTKGKKYPVLSKVQAGAWAEACEVYTLKDIDLWLESDAH 135 Query: 133 IQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLIS 187 IQ + + SM +G ++ ++ + G+ ++ + K LI Sbjct: 136 IQGDAFWLEVEGDSMTAPAGLSIPEGTFVLFDTGREAANGNLVIAKLVDDNEATFKKLII 195 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++ L LN +P+ + + + I Sbjct: 196 DGNQTY-LKGLNPAWPLIPINGN-CKIIG 222 >gi|330966104|gb|EGH66364.1| LexA repressor [Pseudomonas syringae pv. actinidiae str. M302091] Length = 202 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E + E L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEARPDESSLPVI-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + + + + SM + GD+L +++ + G ++ + Sbjct: 94 AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 + ++ K G + L++ N + V++ D Sbjct: 154 -SDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187 >gi|330882778|gb|EGH16927.1| prophage PSPPH01, Cro/CI family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 203 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ +A + G+ P + R P E I + L I Sbjct: 1 METQQISQEEMAERMGVTPGAVGHWMNG-----KREPKIEVINRFLTELGLPILTTSIPA 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134 G + + Y P S P S I Y + Sbjct: 56 SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109 Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189 + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 110 GKAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 169 AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196 >gi|312886574|ref|ZP_07746182.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300977|gb|EFQ78038.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 258 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 16/221 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + ++ LT A + + + + E P + + KI Sbjct: 3 NISSNIKFLRKKKGLTQQQFADELDIKRSLVGAYEENRAE-----PKYDLLKKIALYFEL 57 Query: 68 TICQLLD---LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ ++ + L + + Sbjct: 58 SVDDFINEAIDDKWTPKPKGNPANLRILSISVDKEDNENIELVPVKASAGYMNGYADPEY 117 Query: 125 SPHNGIYAIQ----TQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTG 178 + + + + SMLPL I+ + + V + ++ ++ Sbjct: 118 VAKLPKFYLPMFNKGTHRAFEIKGDSMLPLPSGSIIIAEYVENWADVKTTETYVVVSKSE 177 Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +V K + + + + L+S N Y + DI + + Sbjct: 178 GVVYKRIGNKFKDQKKLKLVSDNPVYEPYEISGEDILELWK 218 >gi|320325900|gb|EFW81959.1| prophage PSPPH01, Cro/CI family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320332035|gb|EFW87971.1| prophage PSPPH01, Cro/CI family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 203 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ +A + G+ P + R P E I + L I Sbjct: 1 METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134 G + + Y P S P S I Y + Sbjct: 56 SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109 Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189 + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 110 GKAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 169 AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196 >gi|237743737|ref|ZP_04574218.1| LexA repressor [Fusobacterium sp. 7_1] gi|256028181|ref|ZP_05442015.1| LexA repressor [Fusobacterium sp. D11] gi|260495801|ref|ZP_05815922.1| LexA repressor [Fusobacterium sp. 3_1_33] gi|289766113|ref|ZP_06525491.1| LexA repressor [Fusobacterium sp. D11] gi|229432768|gb|EEO42980.1| LexA repressor [Fusobacterium sp. 7_1] gi|260196648|gb|EEW94174.1| LexA repressor [Fusobacterium sp. 3_1_33] gi|289717668|gb|EFD81680.1| LexA repressor [Fusobacterium sp. D11] Length = 219 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 68/214 (31%), Gaps = 11/214 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + R+ +H + GLA+K L T +K ++ P +++ + + A Sbjct: 4 GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVIAVYPDE 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 ++L + +KE + S G G + + P+ P Sbjct: 58 REILKKEYLKETLPNVFQKEDAIKIVSNSEILNLPVYGKASAGRGYMNMDSPDYYMPILR 117 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SM P G+ +++ +++ + + K L Sbjct: 118 GNF-SKRSFFVEITGNSMEPTLEDGEFALVDPDNTAYSKNKIYVVTYNDEGYIKRLEMNN 176 Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + I L S N Y + R++ Sbjct: 177 KLKLITLKSDNPDYEDIDIPEEMQEYFTVNGRVV 210 >gi|237803381|ref|ZP_04590966.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806733|ref|ZP_04593437.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025362|gb|EGI05418.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027847|gb|EGI07902.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 203 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 68/213 (31%), Gaps = 28/213 (13%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET------IC 70 E +++ +A + G+ P + R P E I + LA Sbjct: 1 METQDISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLAELGLPILATALPS 55 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + P++ + +G +P G +T + + Sbjct: 56 DEPGMNNVAQTVQPSRFYRYPVISWVEAGGWSEAVE-PYPAGYT-DTFEISD-------- 105 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 Y + + + SM +G ++++++ I+ G ++ P + + K L Sbjct: 106 YKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKL 165 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L LN YP V + + I I Sbjct: 166 VED-AGRYFLKPLNPAYPTLPVT-EECKLIGVI 196 >gi|134099379|ref|YP_001105040.1| LexA repressor [Saccharopolyspora erythraea NRRL 2338] gi|291009924|ref|ZP_06567897.1| LexA repressor [Saccharopolyspora erythraea NRRL 2338] gi|133912002|emb|CAM02115.1| putative repressor of the SOS regulon [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 59/221 (26%), Gaps = 29/221 (13%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIF 59 ++I I R+ PS + GL +S +K R E Sbjct: 19 PLRQQRILVTIRDWVTRYGYPPSTRQIGDAVGLRSSSSVSKHLRSLEE------------ 66 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + P + + + + Sbjct: 67 --QGFLRRSDTMSRPIDVRAFLRDPSTREPAEDSVPVPVVGDIAAGVPIAAEEHVDDVLK 124 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + + + SM+ GDI+++ + + G + Sbjct: 125 LPRGLTG-------RGNVFGLRVRGDSMIDAAICDGDIVVVRQQPEAHSGQIVAALID-D 176 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + RR + L N Y ++ + + ++ Sbjct: 177 EATVK-VYRRRNGHVFLEPRNPDYD--VIDGDEAVILGTVV 214 >gi|56417081|ref|YP_154155.1| hypothetical protein AM1018 [Anaplasma marginale str. St. Maries] gi|222475447|ref|YP_002563864.1| hypothetical protein AMF_776 [Anaplasma marginale str. Florida] gi|254995253|ref|ZP_05277443.1| hypothetical protein AmarM_04750 [Anaplasma marginale str. Mississippi] gi|255003433|ref|ZP_05278397.1| hypothetical protein AmarPR_04215 [Anaplasma marginale str. Puerto Rico] gi|56388313|gb|AAV86900.1| hypothetical protein AM1018 [Anaplasma marginale str. St. Maries] gi|222419585|gb|ACM49608.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 215 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 68/216 (31%), Gaps = 18/216 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I +R + LA +A + + G++ P+++ + I Sbjct: 10 IVARIRSQMDRIGINARELADRASVGKSFVYDIL----SGKSSNPTSKKLMAIAEVLQVP 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ T + L + +P Sbjct: 66 LAYLVGSDDGLYDVTSGGVLPVYYLAESEDEEDKNNHTRCS-------RFYMPAHT---K 115 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 +++++ + SM P D+++++ + ++ + + I+ + L Sbjct: 116 LPFSVESLRFY-DVKGDSMSPTLVGQDVVLVDVSDKIAHPAGVFAIRDSMGILIRRLEYV 174 Query: 189 RGR---SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 R + ++ N Y + DI+ + R++W Sbjct: 175 RDSQNIMLHVVCDNKKYSSYECPVEDIKVLGRVVWY 210 >gi|223934043|ref|ZP_03625996.1| putative phage repressor [Streptococcus suis 89/1591] gi|223897300|gb|EEF63708.1| putative phage repressor [Streptococcus suis 89/1591] Length = 251 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 65/245 (26%), Gaps = 35/245 (14%) Query: 6 HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +K I+ + ++ + + L L T+ + R E + Sbjct: 5 NKDIFSKNLKYYMDKKGVDRNQLCSDLDLKYTTVRDWIKGIT--YPRIGKIELLANYFGI 62 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------------- 109 + + S T + + + G Sbjct: 63 NKSDLIEEKSTIPSTTPKTVSDDVLRLDRDLHSNNHKSWIRYGNALLDKQNTVTDSKNTV 122 Query: 110 ----PTGNKWNTVGVPEIRSPHNGIYAIQTQ----------DTRHKTQDTSMLPLYRKGD 155 T + +N P + ++ + D SM P Y GD Sbjct: 123 NELQATYHTYNYYDQPASAGTGQYLNDVKVETIELPIEVDADFVVPIYGDSMEPEYHSGD 182 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEW 214 + + ++ ++ GD + G+ K L + L SLN Y + D Sbjct: 183 YVFVKLSVDLSDGDIGVFAYN-GEAYIKQL-RITDQGAYLHSLNPDYDNIPITADTDFRT 240 Query: 215 IARIL 219 I ++ Sbjct: 241 IGEVV 245 >gi|257468157|ref|ZP_05632253.1| SOS-response transcriptional repressor [Fusobacterium ulcerans ATCC 49185] gi|317062443|ref|ZP_07926928.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688119|gb|EFS24954.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 205 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 67/213 (31%), Gaps = 18/213 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + ++ N+T LA K + S + R + + I N Sbjct: 3 NLGQKIMLLRKKENMTQDELAEKLNISKQSILNYE-----TEKRLIPIDVLSNIAKLFNF 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 I F D K + P S +GVF + + + +P + Sbjct: 58 PIENFFSNTFDDNEI----LKNSSKIKKIPIISKVSAGTGVFGIEDVLDWLEMPTSLCKN 113 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 SM P D++++ ++ G + K K + Sbjct: 114 CD--------FATFIDGDSMEPKVYDNDLILVQKTTFLDNGSIGIFKIGEDVFCKKFYQN 165 Query: 188 RRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 ++I L S+N Y ++ + + +++ Sbjct: 166 PITKAIVLKSINKSYNSISITSEDEFYILGKVV 198 >gi|218689855|ref|YP_002398067.1| putative repressor protein CI [Escherichia coli ED1a] gi|260870771|ref|YP_003237173.1| putative repressor protein CI [Escherichia coli O111:H- str. 11128] gi|218427419|emb|CAR08317.2| putative repressor protein CI [Escherichia coli ED1a] gi|257767127|dbj|BAI38622.1| putative repressor protein CI [Escherichia coli O111:H- str. 11128] gi|323177632|gb|EFZ63217.1| helix-turn-helix family protein [Escherichia coli 1180] Length = 230 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 17/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + N+ + LA G+D + ++ + G+ + + +++ I + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57 Query: 68 TICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 I L +E + + +G+ G+ + + E Sbjct: 58 DIADLFTSDLKSNTVCKNSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117 Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R+ + + SM P GD++ ++ +I GD + + Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDK 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y + ++L SQ Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222 >gi|323174411|gb|EFZ60036.1| helix-turn-helix family protein [Escherichia coli LT-68] Length = 234 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 58/216 (26%), Gaps = 14/216 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------A 64 + ++ + ++ + L G+ + + R + L Sbjct: 12 KRLNELMTNKGISVTQLKSLVGVTYEMARRYTIGAA--KPRASVMNKLALALGVSASYLE 69 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + S T+ I +L S G + + + + Sbjct: 70 YGVGEREGCKEMTSIPNPTKPDVYRIEVLDLSVSAGPGTYMLSDYV--DVLYAIEFTTEH 127 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + Q SM P GD L ++ +++ D + K Sbjct: 128 ARSLFGNRSQDDIKVMTVNGDSMSPTLVSGDRLFVDISVRHFQTDGVYSFVYGKTFHVKR 187 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIAR 217 L + G + ++S N Y ++ + + + Sbjct: 188 LQMQ-GDKLAVLSDNPAYEKWYIDEKSQDQLYVMGK 222 >gi|229829080|ref|ZP_04455149.1| hypothetical protein GCWU000342_01165 [Shuttleworthia satelles DSM 14600] gi|229792243|gb|EEP28357.1| hypothetical protein GCWU000342_01165 [Shuttleworthia satelles DSM 14600] Length = 204 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 51/220 (23%), Gaps = 35/220 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 +I E I P+ + GL TS F ++ G R T+ Sbjct: 9 KQMQILEYIKNEILSSGYPPTVREICDAVGLKSTSSVFAHLEKLENNGYIRRDPTK---- 64 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 E G G V Sbjct: 65 ----------------------PRAIEVVDDNFNLTRREVVNIPMLGQVAAGQPLLAVEN 102 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + Q K + SM+ + GD +++ G+ ++ Sbjct: 103 ISNYFPIPAEFIPKEQTFMLKVKGESMINVGIFDGDFIMVEKRPTARNGEIVVALVD-DS 161 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N V D + + ++ Sbjct: 162 ATVKTFYKEED-HIRLQPENDDMDPILVP--DCQILGKVF 198 >gi|325103942|ref|YP_004273596.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324972790|gb|ADY51774.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 257 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 16/220 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + ++ LT A + + + E P + + KI Sbjct: 3 RISDNLKYLRKKKGLTQQQFADVMEIKRSLVGAYEEDRAE-----PKYDLLKKIAEYFEI 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP-----PSGSGGFFDSGVFPTG--NKWNTVGV 120 +I ++ +D + + K L F + G N + Sbjct: 58 SIDDFINEKINDKWSPKPKGDPSNLRVLSITLDNNDRENIEFVNVKASAGYLNGYGDPEY 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTG 178 + Q + + SMLPL I+ + + + GD +I + Sbjct: 118 VAELPKFSLPMFNQGTYRAFEIKGDSMLPLPSGSIIIAEYVENWNNLKIGDTAVIVSKND 177 Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +V K + + + I L S N Y T+ DI I Sbjct: 178 GVVYKRIASKFKPEKGIKLSSDNQVYEPYTIVTEDILEIW 217 >gi|24380369|ref|NP_722324.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24378389|gb|AAN59630.1|AE015025_2 putative transcriptional regulator [Streptococcus mutans UA159] Length = 228 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 15/218 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQ 71 + ++ L+ + A K G+ S+ + + + + K+ +A + Sbjct: 7 LKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYFLSQHD 66 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTVGVPE 122 ++++ + + K + + G ++ + Sbjct: 67 IVEIYTRLNESNKTKTLKYSQYLLEQQDKERNLMKNKRYPYRVYEKLSAGTGYSY--FGD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P++ G++ ++ G + G Sbjct: 125 GNFDTVFYDEEIDHDFASWIFGDSMEPIFLNGEVALIKQTGFDYDG-AIYAIDWDGQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I I+ Sbjct: 184 KKVYREETG-LRLVSLNKKYADKFAPYDENPRIIGLIV 220 >gi|302189536|ref|ZP_07266209.1| peptidase [Pseudomonas syringae pv. syringae 642] Length = 203 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 62/209 (29%), Gaps = 20/209 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ +A + G+ P + R P E I ++L I Sbjct: 1 METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRLLTELGLPILTTSLAA 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134 G + + Y P S P S I Y + Sbjct: 56 SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWNEAVE------PYPVGYSDTFEISDYKAK 109 Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189 + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 169 AGRYFLKPLNPSYPTLPVT-EECKLIGVI 196 >gi|218557450|ref|YP_002390363.1| repressor protein CI [Escherichia coli S88] gi|218364219|emb|CAR01884.1| putative repressor protein CI [Escherichia coli S88] Length = 230 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 17/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + N+ + LA G+D + ++ + G+ + + +++ I + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57 Query: 68 TICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 I L +E + + +G+ G+ + + E Sbjct: 58 DIADLFTSDLKSNTVCKNSISEDVTQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117 Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 R+ + + SM P GD++ ++ +I GD + + Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDK 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 I K L + ++S N Y + ++L SQ Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222 >gi|116491000|ref|YP_810544.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1] gi|122276818|sp|Q04F93|LEXA_OENOB RecName: Full=LexA repressor gi|116091725|gb|ABJ56879.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1] Length = 212 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 62/234 (26%), Gaps = 45/234 (19%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGI--EGRNR 51 M I I P+ + GL TS ++ ++ G+ + + Sbjct: 1 MAETKQLGILRFIYEKQNEKGYPPTVREIGEAVGLSSTSTVHGHIDRLEKHGLLHKDPTK 60 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + E K L A + ++P++ +G Sbjct: 61 PRAIEITEKGLRALGVP----------------ETPGKVPIIGLVTAGMPILAVEQ---- 100 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 + +P + TSM+ + GD++ + + GD Sbjct: 101 -AATEFLPIPSDLERF------DGDLFVLRVSGTSMINIGILDGDMVFVRKQDYADNGDI 153 Query: 171 LLIKPRT-----GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ G+ K L N V+ + + +++ Sbjct: 154 VVAMTTDFGNGEGEATVKRFFKESN-HYRLQPENDTMAPIIVKN--VSILGKVV 204 >gi|330808506|ref|YP_004352968.1| transcription factor, LexA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327207059|gb|AEA39179.1| LexA [Pseudomonas fluorescens] gi|327376614|gb|AEA67964.1| Putative transcription factor, LexA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 202 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 60/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E K E L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEAKADETTLPII-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AQQHVEESCNINPSFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V + D Sbjct: 154 -GDEVTVKRFKRD-GSKVWLIAENPEFAPIEVNLKD 187 >gi|325276075|ref|ZP_08141887.1| putative prophage repressor protein [Pseudomonas sp. TJI-51] gi|324098797|gb|EGB96831.1| putative prophage repressor protein [Pseudomonas sp. TJI-51] Length = 242 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 63/217 (29%), Gaps = 18/217 (8%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL---- 72 +T +A + + + + R + K+L Sbjct: 24 RRNRKVTQGAIATELEISQAAVSHYLNGYNPLNARTAAV--FAKMLEVPVSHFSPRLAKE 81 Query: 73 --LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNG 129 + E L PS S + G+ V P + Sbjct: 82 IAYTTEAARIGEVASAEDSNIKLTAQPSMSYRYPVISWVAAGDWAEAVEPFPPGFADRYE 141 Query: 130 I--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182 + Y + + + SM +G ++++++ + G ++ + + Sbjct: 142 VSDYEAKGAAFWLEVKGDSMTAPSGVSIPEGMMILVDTDADASSGKLVVAKLTDSNEATF 201 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K LI GR L LN YP+ V + + I ++ Sbjct: 202 KKLIEDAGRRF-LKPLNPDYPMLQVNGN-CKIIGVVV 236 >gi|260437105|ref|ZP_05790921.1| repressor LexA [Butyrivibrio crossotus DSM 2876] gi|292810417|gb|EFF69622.1| repressor LexA [Butyrivibrio crossotus DSM 2876] Length = 208 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 53/218 (24%), Gaps = 29/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I I + N PS + L TS + + + Sbjct: 9 KQEEILNFIKQHILSKNYPPSVREICEAVNLKSTSSVHAH---------------LATLE 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + Q L P + N + +P Sbjct: 54 KNGYISRDQSKTRAIEIVDDDFGFNLPDRELVNVPMIGTVAAGLPLLAEENIRDYFPIPA 113 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P+ + + + SM+ + GD L++ + G+ ++ Sbjct: 114 DMLPNT-------ETFLLRVKGDSMINMGIYDGDDLLVARQDTASNGEVIVALVD-DSAT 165 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V + + + +++ Sbjct: 166 VKRFYK-ENNHYRLQPENDNMDPIIV--DECKILGKVI 200 >gi|257486654|ref|ZP_05640695.1| repressor protein c2, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010131|gb|EGH90187.1| repressor protein c2 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 218 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI + +A + G+ ++ + + E+++ + Sbjct: 1 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121 AT L E L P+ S + G+ V P Sbjct: 53 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 109 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209 >gi|296127819|ref|YP_003635071.1| LexA family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296019635|gb|ADG72872.1| transcriptional repressor, LexA family [Brachyspira murdochii DSM 12563] Length = 208 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 62/225 (27%), Gaps = 30/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT + + I+ + R + P + + +T Sbjct: 1 MTELTDKQRDIFNFLQRFTNENGY------------PPTVKEIMVHFNFASPTAVTTHLT 48 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L S T +K + S T Sbjct: 49 A--LEKKGYVKKTGKRARGSVPIDTSEKGNHNMVRIPLLSNEVKAGLLMDVADETVEETY 106 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P+ A + K SM+ ++GD+++++ Q + GD ++ K Sbjct: 107 SLPKSI-------AQDEGNFLMKVIGDSMINAHIKEGDMVLVHPTNQADNGDIVVAKIDD 159 Query: 178 G---DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +I K + I L+S N Y + + +++ Sbjct: 160 NGNEEITIKRFFREKD-HIKLISENKNYQPII--KESVALVGKVV 201 >gi|48474480|sp|Q8KT78|LEXA_PSECL RecName: Full=LexA repressor gi|21426066|gb|AAM52308.1|AF502251_1 LexA repressor [Pseudomonas chlororaphis] Length = 202 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 60/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E K + L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEAKPDDSSLPII-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AEQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQVVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V + D Sbjct: 154 -GDEVTVKRFKR-EGSKVWLIAENPEFAPIEVNLKD 187 >gi|149003565|ref|ZP_01828430.1| phage transcriptional repressor [Streptococcus pneumoniae SP14-BS69] gi|147758297|gb|EDK65297.1| phage transcriptional repressor [Streptococcus pneumoniae SP14-BS69] Length = 263 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 67/250 (26%), Gaps = 39/250 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN---------- 50 M FS ++ + N + L+R G+ P++ + Sbjct: 16 MKVFS-----ANLNSILSDRNCKQAELSRATGIPPSTLTGYVKGTSLPIPGNVQKIADFF 70 Query: 51 --------------------RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90 +T I I + +K E+E Sbjct: 71 GVPKSVLDPRFITNNFMVNDSSSNTPQIQTIYDELEPPRQGKVLNYAKRQLKEQKNEEET 130 Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + + +D P + + SM P Sbjct: 131 KINEVSEAIRLYSYDYYDHPASAGTGQYLNDVRVERIELPVDVDAD-FVIPIKGDSMEPD 189 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 Y GD++ + +++ +N G + GD K L+ ++ L SLN Y + Sbjct: 190 YHDGDLVFIQTSVDLNDGVIGV-FNYNGDAYIKQLVIDEDQAY-LHSLNPEYKDMPITPD 247 Query: 211 -DIEWIARIL 219 D I ++ Sbjct: 248 TDFRIIGEVV 257 >gi|315145057|gb|EFT89073.1| repressor LexA [Enterococcus faecalis TX2141] gi|315160426|gb|EFU04443.1| repressor LexA [Enterococcus faecalis TX0645] Length = 209 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 55/221 (24%), Gaps = 29/221 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 T ++ + I E P+ + + L TS +E + + Sbjct: 8 TETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRDPTKP 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + T E + EK P + + Sbjct: 68 RAIELTPEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEASDFFP 110 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + SM+ GD +I+ N GD ++ Sbjct: 111 LPPDLRTEENAL------FMLMIRGESMINAGILDGDQVIVRKQSNANNGDIVIAMTDED 164 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N ++ + + +++ Sbjct: 165 EATCKRFFR-EVDHIRLQPENDALAPILLDN--VTILGKVV 202 >gi|171911475|ref|ZP_02926945.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136] Length = 261 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 9/210 (4%) Query: 8 KIWEA---IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 I A + + R LT LA+ + + + + K L Sbjct: 38 DIGNARQLLKQARLRKALTVDQLAKSIRYSTGYLQALEEGRAPASAKVIAL--LEKALNL 95 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 T+ + + P + + + + Sbjct: 96 DPGTLYRGSEPGVIREDGLTAPYGTKPQVETTKGVGPARYIPLIGYSQAGIGNYEDLYEH 155 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---LIKPRTGDIV 181 ++ + + SM P Y +GDIL ++ GD + + + GD++ Sbjct: 156 ESVIAFGTTDSKAFATRLRGDSMEPKYSEGDILYVSPNATPKNGDIVLAKVDEAHGGDVM 215 Query: 182 AKVLISRRGRS-IDLMSLNCCYPVDTVEMS 210 K+ SR G I L S N YP S Sbjct: 216 CKLYSSRDGGKNIVLSSYNAAYPPMEFSRS 245 >gi|304388214|ref|ZP_07370335.1| probable transcriptional regulator, repressor [Neisseria meningitidis ATCC 13091] gi|304337825|gb|EFM03973.1| probable transcriptional regulator, repressor [Neisseria meningitidis ATCC 13091] Length = 236 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 26 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 80 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132 K+ G + + Sbjct: 81 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 140 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N D L + +++ K L G Sbjct: 141 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 199 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 I+++S N YP + + D+E I R+ W Sbjct: 200 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 231 >gi|152981403|ref|YP_001352990.1| LexA repressor [Janthinobacterium sp. Marseille] gi|172049087|sp|A6SXJ3|LEXA_JANMA RecName: Full=LexA repressor gi|151281480|gb|ABR89890.1| LexA transcription regulation repressor [Janthinobacterium sp. Marseille] Length = 219 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 15/213 (7%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + ++I I E P+ L S N ++ +++ Sbjct: 1 MIKLTARQEQILNLIRDAIENTGFPPTRAEIATELGFRSANAAEEH----------LQAL 50 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + A G E+ L P G G+ Sbjct: 51 ARKGAIEISPGTSRGIRLRDMGNGDERFPGRQMALPHPALMQLSLPLVGRVAAGSPILAQ 110 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + D K + SM GD+L + G ++ + Sbjct: 111 EHIEATYDVDRSLFSAKPDFLLKVRGMSMRDAGILDGDLLAVKKIDTAKNGQIVVAR-LG 169 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K + G I+L+ N + V+++ Sbjct: 170 EEVTVKRY-KKSGSLIELLPENPDFEPIRVDLA 201 >gi|254497251|ref|ZP_05110059.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12] gi|254353479|gb|EET12206.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12] Length = 224 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 14/222 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +KI E I + + LT L+ L P+ N +R R P E I ++ A Sbjct: 5 EKIGERIFQERQAKGLTRKALSELTDDLKPSRINNWERGI-----RTPGPEEIKQLAEAL 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + L+ L E L+ + + + + I Sbjct: 60 DVAPGYLMCLTDDKQVKQEFPW-LGALIPLLNAQQACDPKQYIQAIKEDRKSDAISFIPL 118 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKV 184 + + QD SM P + GDILI++ + G ++I + ++ + Sbjct: 119 SPDLTAQLGNNSFALCIQDDSMTPELKIGDILIVDPDQIIRPGGIVVIHLQDSKEVTVRR 178 Query: 185 LISRRGR----SIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221 +L+++N + V S + I ++ A Sbjct: 179 YKQLSAGNPVKEYELIAVNENWASIRVTRSCGHKIIG-VVLA 219 >gi|256845641|ref|ZP_05551099.1| LexA repressor [Fusobacterium sp. 3_1_36A2] gi|256719200|gb|EEU32755.1| LexA repressor [Fusobacterium sp. 3_1_36A2] Length = 218 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 63/214 (29%), Gaps = 11/214 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + ++ + LA K + T +K ++ R + +++ K + Sbjct: 4 GKILKEIRLKNGDSLQRLAEKTEIVFTYIDKIEKGT-----RPINKDNLEKFIKVYPLYK 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 Q + K + + G GN + + EI Sbjct: 59 KQFEKAYLDEIMPESLKGSTFNMEE-QKVNTVILPVYGKASAGNGYINLDQ-EIYYFPIK 116 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SM P GD +++ +++ + + K ++ Sbjct: 117 KGDFSDRSFLVEISGNSMEPTLEDGDYALVDPDNIDYVKNKIYVVTYNDESFIKRMVMDA 176 Query: 190 GRSID-LMSLNCCYPVDTVEMSD---IEWIARIL 219 I L S N Y + ++ R++ Sbjct: 177 KSKIVMLKSDNPEYEDILITKDMQVYLKIEGRVI 210 >gi|237799454|ref|ZP_04587915.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6] gi|302186661|ref|ZP_07263334.1| LexA repressor [Pseudomonas syringae pv. syringae 642] gi|330898298|gb|EGH29717.1| LexA repressor [Pseudomonas syringae pv. japonica str. M301072PT] gi|330953935|gb|EGH54195.1| LexA repressor [Pseudomonas syringae Cit 7] gi|330976184|gb|EGH76246.1| LexA repressor [Pseudomonas syringae pv. aptata str. DSM 50252] gi|331022310|gb|EGI02367.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6] Length = 202 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E + + L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEARPDDSSLPVI-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + + + + SM + GD+L +++ + G ++ + Sbjct: 94 AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ D Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187 >gi|256847032|ref|ZP_05552478.1| LexA repressor [Lactobacillus coleohominis 101-4-CHN] gi|256715696|gb|EEU30671.1| LexA repressor [Lactobacillus coleohominis 101-4-CHN] Length = 208 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 56/224 (25%), Gaps = 40/224 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGRNRWPSTE 56 + I + P+ + GL TS N+ K+ ++ P Sbjct: 8 KQTAVLNYIHKQVAAQGYPPTVREICAAVGLSSTSTVHGHINRLIKKGYLKKDPAKPRAL 67 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I P P + + + Sbjct: 68 EI---------------------TPEGLSFLGIEPKQNQIPLLGIVAAGEPILAEQDATD 106 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 +P + H+ + Q TSM+ + GD +I+ N GD ++ Sbjct: 107 FFPIPPTINDHD-------DLFMLQIQGTSMINMGILDGDKVIVRRQNTANNGDVVIAMT 159 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L N ++ + + +++ Sbjct: 160 SDNEATCKRFFKEE-SYYRLQPENDTMDPIILDH--VTILGKVV 200 >gi|26989835|ref|NP_745260.1| LexA repressor [Pseudomonas putida KT2440] gi|29427652|sp|P59479|LEXA2_PSEPK RecName: Full=LexA repressor 2 gi|24984739|gb|AAN68724.1|AE016504_7 LexA repressor [Pseudomonas putida KT2440] Length = 202 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 63/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K+ I+E I H PS +A + G S + Sbjct: 1 MDTLTPKRRAIFEFIRERIAEHGQPPSLADIATRFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + A + + + G + + +L P G G Sbjct: 45 ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILEIPVLGQVAAGAPIGPDLGIHEQ 101 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 + P + K + SM+ GD++ + G ++ + Sbjct: 102 LLLDPSLFRRTPD--------YLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + G + L+ N Y V+ Sbjct: 154 D-GEVTIKRLQRQ-GGTYRLLPRNPAYAPIDVQPEQ 187 >gi|257483129|ref|ZP_05637170.1| peptidase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330891219|gb|EGH23880.1| peptidase [Pseudomonas syringae pv. mori str. 301020] gi|330955076|gb|EGH55336.1| peptidase [Pseudomonas syringae Cit 7] Length = 203 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ +A + G+ P + R P E I + L I Sbjct: 1 METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134 G + + Y P S P S I Y + Sbjct: 56 SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109 Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189 + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 169 AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196 >gi|332686571|ref|YP_004456345.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] gi|332370580|dbj|BAK21536.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] Length = 206 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 5/111 (4%) Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQ-DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168 GN T+ P P + SM+ GD +I+ + G Sbjct: 92 AGNPILTLEEPVGVFPILPDLQTEENELFMLTICGESMIHAGILDGDQVIVRKQSTADNG 151 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K SI L N + + + + +++ Sbjct: 152 DIVIAMTNQNEATCKRFFK-ENNSIRLQPENDQFEPIILTN--VTILGKVI 199 >gi|256391012|ref|YP_003112576.1| SOS-response transcriptional repressor, LexA [Catenulispora acidiphila DSM 44928] gi|256357238|gb|ACU70735.1| SOS-response transcriptional repressor, LexA [Catenulispora acidiphila DSM 44928] Length = 228 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 28/223 (12%) Query: 2 TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + ++ + I R PS + GL TS + + +E + Sbjct: 23 PRLTERQTAVLNVIRDSVRRRGYPPSMREIGEAVGLQSTSSVRHQLVTLESK------GF 76 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + I + + +E + +PL+ +G Sbjct: 77 LHRDANRPRAYIVRGAENAGRAANGSEPEPAYVPLVGRIAAGGPI------LAEERVEEL 130 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + +P+ + + + SM GD++++ Q G+ + Sbjct: 131 IPIPKQMVG-------EGEFFALRVVGDSMIEAAICDGDVVVIRQQKQAENGEFVAAMID 183 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L + ++ LM N Y +D + R++ Sbjct: 184 -GEATVKEL-KKEANAVWLMPRNAAYEPI--PGNDAVILGRVV 222 >gi|225572147|ref|ZP_03781011.1| hypothetical protein RUMHYD_00441 [Blautia hydrogenotrophica DSM 10507] gi|225040319|gb|EEG50565.1| hypothetical protein RUMHYD_00441 [Blautia hydrogenotrophica DSM 10507] Length = 213 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 51/219 (23%), Gaps = 30/219 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I E I PS + L TS S + + L Sbjct: 14 KQREILEYIKNEILNRGFPPSVREICEAVELKSTS----------------SVHAHLETL 57 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P G G V E Sbjct: 58 EKNGYIRRDPTKPRTIEILDDNFNLLRREMVNVPVV--------GTVTAGQPILAVENIE 109 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P + Q Q SM+ GD +++ G+ ++ + Sbjct: 110 SYFPVPAEFMPNQQCFILNVQGESMVNAGILDGDQVLVQQQPDAQNGEIVVAL-LGEEAT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 K + L N V+ + + + ++ Sbjct: 169 VKRFYKEKN-CYRLQPENDTMEPIIVDSDQEFKILGKVF 206 >gi|269958511|ref|YP_003328298.1| putative transcriptional regulator [Anaplasma centrale str. Israel] gi|269848340|gb|ACZ48984.1| putative transcriptional regulator [Anaplasma centrale str. Israel] Length = 215 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 65/216 (30%), Gaps = 18/216 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ++ + LA +A + + G++ P+++ + I Sbjct: 10 IVARIRSQMDKIGINARELADRASVGKSFVYDIL----SGKSSNPTSKKLMAIAEVLQVP 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ + L + +P Sbjct: 66 LAYLVGSDDGLYDVASGGMLPVYYLAESEDEEEKHNHTRCS-------RFYMPAHTKLPF 118 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + SM P D+++++ + ++ + + I+ + L Sbjct: 119 NV----ENLRFYDVKGDSMSPTLVGQDVVLVDVSDRIAHPAGVFAIRDSMGILIRRLEYV 174 Query: 189 RG-RSIDL--MSLNCCYPVDTVEMSDIEWIARILWA 221 R + I L + N Y + DI+ + R++W Sbjct: 175 RDSQHIMLHVVCDNKKYSSYECPVEDIKVLGRVVWY 210 >gi|289167282|ref|YP_003445549.1| repressor (phage associated) [Streptococcus mitis B6] gi|288906847|emb|CBJ21681.1| repressor (phage associated) [Streptococcus mitis B6] Length = 246 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 30/240 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARK--------AGLDPTSFNKSKRFGIEGRNRW-------- 52 I I + + + LT LA + +K + E R Sbjct: 2 IGTKIRELRKNNKLTLEELADALNQKYPNTINFNKGKISKWENNKEEPRLSSVKIIADFF 61 Query: 53 -----------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 S I I E + + + + K + + P Sbjct: 62 DVPLDYFNDTPDSHPEILTIYNQLEEPKQEKVLDYAKEQLEGQNNSKIVSIFDKPQDDDY 121 Query: 102 G-FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + G+ G+ + + DT K SM P+ D+L + Sbjct: 122 ITDYVEGLVAAGHGTFQEDNLHMEVKLRADDVPEEYDTIAKVAGDSMEPMIEDNDLLFIR 181 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 QV+ D + + G K L L SLN Y + E DI I ++ Sbjct: 182 VTSQVDINDIGIFQIN-GKNFVKKLKRDYNGGWYLQSLNNSYEEIHLTENDDIRTIGEVV 240 >gi|269104777|ref|ZP_06157473.1| phage repressor [Photobacterium damselae subsp. damselae CIP 102761] gi|268161417|gb|EEZ39914.1| phage repressor [Photobacterium damselae subsp. damselae CIP 102761] Length = 238 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 21/213 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-------LDPTSFNKSKRFGIEGRNRWP 53 M + + I + LT LA+K S + + Sbjct: 12 MVM----TLGDRIKERRQALELTQEELAQKVAKIVTDMKFSRVSLSNIELGVQN----SV 63 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + T L+ + + + G Sbjct: 64 KDKVLLALSNFLKCTPEWLVYGTGPISSDKKSDSVSNVQVESALTQQCPLI--SWVQAGA 121 Query: 114 KWNTVGVPEIRSPH-NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRL 171 PE + ++ + SM+ + +GD++ ++ + G + Sbjct: 122 FTEIREYPESDYQYYPSPVKCGSRTFILRVHGDSMMDRFHEGDLIYVDPDQIEPIHGKFV 181 Query: 172 L-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 + + + K L G+ + L +LN YP Sbjct: 182 IAQLEDSAEATFKQLQIVDGQKL-LKALNPNYP 213 >gi|260557994|ref|ZP_05830206.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260408504|gb|EEX01810.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 250 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 68/242 (28%), Gaps = 27/242 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + L L++K G+ +S + + + + + Sbjct: 11 MAELTP---GDRLRFLRTQAGLNQKELSKKTGVGQSSISDFENNVKI-----MAADKLAA 62 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK--EIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A N T ++ + +KK E + ++D G + Sbjct: 63 IAKALNSTSEYIIFGGSNAKLMEDKKLAVWEDGDEIPSDMVAIKYYDDVRVSAGYGYMNE 122 Query: 119 G------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + R + Q SM P + G ++ ++ + + Sbjct: 123 TPQTHKQLWFRRDSLDAYNVSIKDSEAVVVQGESMYPEFSDGQVIAVDRSATKIFDGEIY 182 Query: 173 IKPRTGDIVAKVLI---SRRGRSIDLMSLNCC--------YPVDTVEMSDIEWIARILWA 221 D K L + +S N Y +E I I + W Sbjct: 183 AFQVGEDTKVKFLFNWTEQGEGGFKAVSRNEDKIRFPDEYYSPARIEAEGIYIIGQYWWK 242 Query: 222 SQ 223 SQ Sbjct: 243 SQ 244 >gi|300871392|ref|YP_003786265.1| LexA repressor [Brachyspira pilosicoli 95/1000] gi|300689093|gb|ADK31764.1| LexA repressor [Brachyspira pilosicoli 95/1000] Length = 208 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 32/226 (14%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT + K+ I + + + P + + T + Sbjct: 1 MTELTDKQKHILNFLQKFMNENGY------------PPTVKEIMVHFNFASP-TAVTTHL 47 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + T EKK+ I + G + + Sbjct: 48 TALEKKGYVKKTGKRARGSVPINTVEKKDNLIKIPLLTNEVKAGLLMD--VSDESYEDFF 105 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI-QVNCGDRLLIKPR 176 +PE A + K + SM+ ++GD++++N + + GD ++ K Sbjct: 106 PLPESI-------AQNENNFLMKVKGDSMIDAHIKEGDMVLVNPSNIEPQNGDIVVAKID 158 Query: 177 TG---DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +I K + I L++ N YP + + +++ Sbjct: 159 DNGDEEITIKRFFKEKD-CIKLVAENKEYPPII--QEKVSIVGKVV 201 >gi|300691708|ref|YP_003752703.1| transcriptional lexA repressor [Ralstonia solanacearum PSI07] gi|299078768|emb|CBJ51428.1| transcriptional lexA repressor [Ralstonia solanacearum PSI07] Length = 216 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 23/216 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I + +R P + +A + G + + E Sbjct: 1 MATLTPRQRQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA R L G G+ Sbjct: 45 EHLRALARKGVIELTPGASRGIRLRAEGDASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + D K + SM GD+L + A + G ++ + Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRANEAANGKIVVAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + GR ++L++ N + V++ Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198 >gi|161869489|ref|YP_001598656.1| transcriptional regulator [Neisseria meningitidis 053442] gi|218767679|ref|YP_002342191.1| putative transcriptional regulator [Neisseria meningitidis Z2491] gi|254804438|ref|YP_003082659.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|121051687|emb|CAM07990.1| putative transcriptional regulator [Neisseria meningitidis Z2491] gi|161595042|gb|ABX72702.1| transcriptional regulator [Neisseria meningitidis 053442] gi|254667980|emb|CBA04278.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|254671461|emb|CBA09000.1| peptidase, S24 family [Neisseria meningitidis alpha153] gi|319409934|emb|CBY90261.1| putative transcriptional regulator [Neisseria meningitidis WUE 2594] gi|325133929|gb|EGC56585.1| putative transcriptional regulator [Neisseria meningitidis M13399] gi|325135854|gb|EGC58466.1| putative transcriptional regulator [Neisseria meningitidis M0579] gi|325141783|gb|EGC64232.1| putative transcriptional regulator [Neisseria meningitidis 961-5945] gi|325144058|gb|EGC66368.1| putative transcriptional regulator [Neisseria meningitidis M01-240013] gi|325197768|gb|ADY93224.1| putative transcriptional regulator [Neisseria meningitidis G2136] gi|325202655|gb|ADY98109.1| putative transcriptional regulator [Neisseria meningitidis M01-240149] gi|325203646|gb|ADY99099.1| putative transcriptional regulator [Neisseria meningitidis M01-240355] gi|325206594|gb|ADZ02047.1| putative transcriptional regulator [Neisseria meningitidis M04-240196] gi|325207599|gb|ADZ03051.1| transcriptional regulator [Neisseria meningitidis NZ-05/33] Length = 228 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 18 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132 K+ G + + Sbjct: 73 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N D L + +++ K L G Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 191 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 I+++S N YP + + D+E I R+ W Sbjct: 192 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 223 >gi|255016583|ref|ZP_05288709.1| Repressor protein CI [Bacteroides sp. 2_1_7] Length = 246 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 14/230 (6%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112 I K+ + + + + G F F G Sbjct: 66 LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + S ++ T P + G +++++ V GD + Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 + + K LI G+ L LN YP+ + ++ S Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKLSLVS 230 >gi|254480410|ref|ZP_05093657.1| LexA repressor [marine gamma proteobacterium HTCC2148] gi|214038993|gb|EEB79653.1| LexA repressor [marine gamma proteobacterium HTCC2148] Length = 200 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 40/217 (18%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I + + P + +AR+ G Sbjct: 1 MEKLTNRQQQVLDVIRQHIDHTGYPPTRADIARELGF----------------------- 37 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K A E + L + + ++P P + V N + Sbjct: 38 ---KSANAAEEHLKALARKGAIEIIPGASRGIKLPDTAGIPIVGRVAAGNPVLAEENIED 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 +P + D + SM+ + GD+L ++S N GD ++ + Sbjct: 95 YCDLPPE-------FFKPRADYFLRVTGDSMIDIGIFDGDLLAVHSTPVANNGDVVVARI 147 Query: 176 RTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSD 211 ++ K L + L+ N Y V++ + Sbjct: 148 -EDEVTVKRLQKGPNEHQLQLLPENPDYQPIKVDLRE 183 >gi|195546597|ref|YP_002117625.1| C repressor protein [Rhizobium phage 16-3] gi|218512144|sp|P15238|RPC_BP163 RecName: Full=Repressor protein C gi|102642540|gb|ABF71321.1| C repressor protein [Rhizobium phage 16-3] Length = 263 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/265 (11%), Positives = 58/265 (21%), Gaps = 57/265 (21%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + + + E +T + LAR+ G + N W Sbjct: 8 MSRLT-----DTLAAKLEEAGITQAELARRVGQSQQAINNLFAGRAASSMVWRELARELG 62 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP---------- 110 I + + K +L P P Sbjct: 63 IDEQEMRQMMTEAGRDPEKVTSLAGLRKYRAVLPSPREPFPIIRQQEHLPRPNATIGEET 122 Query: 111 --------------------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 G+ + V P Sbjct: 123 NMEPRKKKLLPVLGEAVGGEDGEYIFNGSVLDYVDCPPSLENVP-------NAYAVYIDG 175 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--------IVAKVLISRRGRSIDLM 196 SM+P +R G+ + ++ GD ++I+ + K + + L Sbjct: 176 ESMVPRFRPGETVWVHPTKPPRRGDDVVIQIHPDNEDDGAPPRGFVKEFVGWTANKLVLQ 235 Query: 197 SLNCCYPVDTVEMSDIEWIARILWA 221 N + + I+ A Sbjct: 236 QYNPT-KKIEFTREQVVSVHPIILA 259 >gi|330895379|gb|EGH27717.1| XRE family transcriptional regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 314 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 62/235 (26%), Gaps = 27/235 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-----NRWPST--ESIFKIL 62 + + + L+ S A + G+ N GI GR R E + Sbjct: 72 GDRLKYLLRSRGLSASQFAAEFGISNQMLNNWFVRGIPGRHLLSVARRLGMNPEWLESGA 131 Query: 63 AATNETICQLLDL-----------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + P S + + Sbjct: 132 GEPHYSKIDEDYRRLSAPEKVKADQAYREWNEAHSPTTNIEPAIQPRRSFEYPEVSWVQA 191 Query: 112 GNKWNTVGVPEIRS--PHNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQV 165 G+ + I H+ K SM + +G ++++ ++ Sbjct: 192 GSPSEAIDPSNIALCPRHSSDVWAGEGGFWLKVTGNSMTSSGPASFPEGHLILVAPDLEP 251 Query: 166 NCGD-RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G + + + K L+ G + L LN +PV + E + ++ Sbjct: 252 RPGQFGVARLVDSNEATFKQLVKDAGD-LYLRPLNPAFPVKELT-DSWEIVGTVV 304 >gi|289676195|ref|ZP_06497085.1| peptidase [Pseudomonas syringae pv. syringae FF5] Length = 203 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 63/211 (29%), Gaps = 24/211 (11%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ---LL 73 E ++ +A + G+ P + R P E I + L I Sbjct: 1 METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPT 55 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIYA 132 P + G + V P + +T + + Y Sbjct: 56 SEPGMHNVEHTVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISD--------YK 107 Query: 133 IQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLIS 187 + + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 108 AKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVE 167 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 168 D-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196 >gi|330816792|ref|YP_004360497.1| LexA repressor [Burkholderia gladioli BSR3] gi|327369185|gb|AEA60541.1| LexA repressor [Burkholderia gladioli BSR3] Length = 214 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 60/214 (28%), Gaps = 25/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ I R ER P + +A + G E R + + Sbjct: 1 MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A R L G G+ Sbjct: 54 GVIELAAG-----------ASRGIRLLGDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 102 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 103 AQEHISQNYTCDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRSEAKDGQIIVAR- 161 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L I+L++ N Y V+ Sbjct: 162 LGDDVTVKRLKRHSSG-IELIAENPDYENIFVKA 194 >gi|306825469|ref|ZP_07458809.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432407|gb|EFM35383.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 257 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 76/252 (30%), Gaps = 42/252 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG--IEGRNRWPSTESIFKILAAT 65 K+ E + H L+ + L + ++ + PS E+I KI Sbjct: 2 KLGELLKAYRTEHKLSMDAFCELSDLTKGYISMLEKNEHPKSKKPIVPSYETIEKIAKGM 61 Query: 66 NETICQLLDLPFSDGRTTEK-------------------KEKEIPLLYFPPSGSGGFFDS 106 ++ L+D+ D ++ +L + + Sbjct: 62 RISVEGLIDMLDDDQEIQINATPPVLSKSSIQTIYDQLAPPRQGKVLTYAEKQLNEQRNE 121 Query: 107 GVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQ----------DTRHKTQDTSML 148 ++ P + ++ + D + SM Sbjct: 122 EETKINEVSEVIQLYSYDYYDHPASAGTGQYLNDVRVERIELPVDVDADFVIPIKGDSME 181 Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 P Y GD++ + +++ +N G + GD K L+ + ++ L SLN Y + Sbjct: 182 PNYHDGDLVFIQTSVDLNNGVIGV-FNYNGDAYIKQLVIDKDQAY-LHSLNPVYKDMPIT 239 Query: 209 MS-DIEWIARIL 219 D I ++ Sbjct: 240 TETDFRIIGEVV 251 >gi|317402765|gb|EFV83310.1| hypothetical protein HMPREF0005_01843 [Achromobacter xylosoxidans C54] Length = 253 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 58/228 (25%), Gaps = 31/228 (13%) Query: 27 LARKAGLDPTSFNKSKRF---GIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 LA +AG+ ++ + + R +I A + + Sbjct: 24 LAERAGVSRKYLDQILQGFQGKRDKNPRRVGDALAARISAGLGQPAHWMDLPHPDLWHEL 83 Query: 84 EKKEKEIPLLYFPPSGSGG------------FFDSGVFPTGNKWN----------TVGVP 121 S + G G+ P Sbjct: 84 SPDVIADEPPGRLVSFNHGRLGRPDHGNVLIAQFDTGGAMGSGLELRDQPGVIQSWNVSP 143 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E + ++ SM P++ GD LI++ +Q D + + Sbjct: 144 EWLQKNVRGFSASKNLCIVTGFGDSMRPMFNPGDPLIVDRGVQAVEYDAIYFFRVGSEGF 203 Query: 182 AKVLISRR---GRSIDLMSLNCCYPVDTVEMS-DIEWIARI--LWASQ 223 K L G + S N Y + D E R+ +W S+ Sbjct: 204 IKRLQRIPTASGLVVRAKSENTKYDAWDITEGMDFEVFGRVLKVWRSE 251 >gi|308388740|gb|ADO31060.1| putative transcriptional regulator [Neisseria meningitidis alpha710] gi|325129691|gb|EGC52504.1| putative transcriptional regulator [Neisseria meningitidis OX99.30304] Length = 228 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 18 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132 K+ G + + Sbjct: 73 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYITR 132 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N D L + +++ K L G Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 191 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 I+++S N YP + + D+E I R+ W Sbjct: 192 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 223 >gi|319793947|ref|YP_004155587.1| transcriptional repressor, lexa family [Variovorax paradoxus EPS] gi|315596410|gb|ADU37476.1| transcriptional repressor, LexA family [Variovorax paradoxus EPS] Length = 227 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 13/209 (6%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I + I R P + +A + G E + + + + ++++ Sbjct: 11 QQQILDLIQSAIARTGAPPTRAEIANELGFKSA-------NAAEEHLQALARKGVIELVS 63 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T+ I D S T ++ + L P G G+ + Sbjct: 64 GTSRGIRLKGDALRSLNETRHREGGQFS-LSLPGMAQLALPLIGRVAAGSPILAQEHVDQ 122 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + D K + SM GD+L + + + G ++ + ++ Sbjct: 123 TYYVENTLFQRQPDYLLKVRGMSMRDAGIMDGDLLAVQATKEARNGQIVVAR-LGDEVTV 181 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L + I+L + N YP V+ + Sbjct: 182 KRLKR-NKQVIELHAENPDYPTIIVQPGE 209 >gi|148547010|ref|YP_001267112.1| putative prophage repressor [Pseudomonas putida F1] gi|148511068|gb|ABQ77928.1| putative prophage repressor [Pseudomonas putida F1] Length = 224 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 14/210 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + K + E LT LA + G+ S + R P ES+ + Sbjct: 1 MPAMNMDKWIALVRDRMEELGLTQEQLAERVGVSQGSVGHWVN-----KRRQPKLESMNR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG- 119 L + G+ ++ + +P W+ + Sbjct: 56 TLVEIGMPHYCVRLQLRIHGQADGERCVSGVDDDDDEPDLMRYIVCFRYPV-LGWSELEA 114 Query: 120 --VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLI 173 E Y Q + ++ +M + +G ++++ ++ G ++ Sbjct: 115 ATAVEPAVFEQTDYLAQGKAFWLTVENDAMSAVSGRSVPQGMRMLVDPGVEAEAGRLVIA 174 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 + + + L G+ L +LN YP Sbjct: 175 RQPGKPAIFRELAEEGGQRY-LKALNSNYP 203 >gi|322411714|gb|EFY02622.1| phage repressor-like protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 66/230 (28%), Gaps = 21/230 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FS ++ A R+A++ L L + ++ + + ++ + E + + Sbjct: 1 MFSGDQLKTA--RLAKQ--LNQEELGQLLNVNKMTISNWEKGKNIPNQKHF--EQLLSLF 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + + L + ++++ + ++ Sbjct: 55 GLTADYFNKDHRLLIPFNQLLPVNKEKVISYSEQLLNQQTPITKLPNKSKKVYSYRVYES 114 Query: 123 IRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + + Y D SM P Y G+++++ G Sbjct: 115 LSAGTGYSYFGDGNFDVVFHDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQDSFDYDG-A 173 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G K + + L+SLN Y + I +I+ Sbjct: 174 IYAVEWDGQTYIKKVYREEDG-LRLVSLNKKYSDKFAPYDEDPRIIGKII 222 >gi|91201180|emb|CAJ74240.1| similar to LexA transcriptional repressor, SOS response regulator [Candidatus Kuenenia stuttgartiensis] Length = 216 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 56/219 (25%), Gaps = 33/219 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + P+ + R L T+ K IL Sbjct: 16 KQADFLAFLKASLQEKGYPPTVREIMRGMDLSSTNIVK----------------KYLDIL 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A Q + E L+ S G + Sbjct: 60 ARKGHIKKQYNSPRAIEIIEAPAGHAETNLIPIVGSVKAGAPHPA----------IEDIM 109 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + SM+ ++GD++++ N + ++ G+ Sbjct: 110 GYLAVDKTICRTGDAFFLRVEGDSMINAHIQEGDLVLVRPQPVANNREIVVALIN-GEAT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218 K + G +++L + + E ++ I ++ Sbjct: 169 VKRFYKK-GNTLELHPEHPMMKPIVLQGEQDEVRIIGKV 206 >gi|66047830|ref|YP_237671.1| peptidase [Pseudomonas syringae pv. syringae B728a] gi|63258537|gb|AAY39633.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] Length = 229 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 20/225 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++K +E ++ E ++ +A + G+ P + R P E I + Sbjct: 11 MIRRMNRKWYEVARQVMETQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINR 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L I G + + Y P S Sbjct: 66 FLTELGLPILTTSIPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PY 119 Query: 121 PEIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-I 173 P S I Y + + + SM +G ++++++ I+ G ++ Sbjct: 120 PAGYSDTFEISDYKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAK 179 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 P + + K L+ L LN YP V + + I I Sbjct: 180 LPESNEATFKKLVED-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 222 >gi|145588605|ref|YP_001155202.1| SOS-response transcriptional repressor, LexA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047011|gb|ABP33638.1| SOS-response transcriptional repressor, LexA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 239 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 20/218 (9%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + +I E I + + L P + +A + G E R Sbjct: 16 PKLTPRQSEILELITKAIDESGLPPTRAEIATQLGFASA-------NAAEEHLRAL---- 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +P +T + L G G+ Sbjct: 65 AKKGYIELTPGTSRGIRIPQRFNQTHHTNKYRQMSLPSGALQQLTLPLIGRVAAGSPIMA 124 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 V E + P + + D K + SM GD L + +V GD ++ + Sbjct: 125 VEHIEKQVPIDPSLFSKGADYLLKVKGMSMRDAGILDGDYLAVRKTTEVRNGDIVVARLD 184 Query: 177 TGDIVAKVLISR---RGRSIDLMSLNCCYPVDTVEMSD 211 ++ K + G I+L + N + V+ Sbjct: 185 -DEVTVKRWQQKKTANGMVIELQAENPDFKNIVVDSRQ 221 >gi|307545562|ref|YP_003898041.1| LexA repressor [Halomonas elongata DSM 2581] gi|307217586|emb|CBV42856.1| LexA repressor [Halomonas elongata DSM 2581] Length = 221 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 64/215 (29%), Gaps = 25/215 (11%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62 + +++ I + P + ++R G R P+ E + L Sbjct: 9 QQNVFDFIVKTMNELGYPPTRAEISRALGF-----------------RSPNAAEEHLRAL 51 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 E + + S G G G+ + Sbjct: 52 ERKGVIRVIRGTSRGIRLPAQEADPQAAGDTATDSTPSQGLPIIGEVAAGSPILATEHID 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P Y D + + SM + +GD+L ++ ++ G ++ + ++ Sbjct: 112 RYCPLPPEYFTPRADYLLRVRGLSMQNIGILEGDLLAVHRTERIRDGQIVVAR-LEEEVT 170 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEW 214 K + G + L + N + V++ ++E Sbjct: 171 VKRFHRQ-GHRVVLEAENPDFAPIEVDLRHQELEI 204 >gi|28867799|ref|NP_790418.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000] gi|28851034|gb|AAO54113.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000] Length = 215 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 20/212 (9%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ E ++ +A + G+ P + R P E I ++L I Sbjct: 10 RQVMETQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRLLGELGLPILATS 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--Y 131 G + Y P S P S I Y Sbjct: 65 IPSSEPGMQNVAPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDY 118 Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186 + + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 119 KAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLV 178 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V D + I I Sbjct: 179 ED-AGRYFLKPLNPAYPTLPVT-EDCKLIGVI 208 >gi|239815617|ref|YP_002944527.1| LexA repressor [Variovorax paradoxus S110] gi|259494481|sp|C5CKV7|LEXA_VARPS RecName: Full=LexA repressor gi|239802194|gb|ACS19261.1| SOS-response transcriptional repressor, LexA [Variovorax paradoxus S110] Length = 227 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 13/209 (6%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I + I R P + +A + G E + + + + ++++ Sbjct: 11 QQQILDLIQSAIARTGAPPTRAEIANELGFKSA-------NAAEEHLQALARKGVIELVS 63 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T+ I D S + ++ + L P G G+ + Sbjct: 64 GTSRGIRLKGDALRSLNESRHREGGQFS-LSLPGMSQLALPLIGRVAAGSPILAQEHVDQ 122 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + D K + SM GD+L + + + G ++ + ++ Sbjct: 123 TYYVENTLFQRQPDYLLKVRGMSMRDAGIMDGDLLAVQATKEARNGQIVVAR-LGDEVTV 181 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L + I+L + N YP V+ + Sbjct: 182 KRLKR-NKQVIELHAENPDYPTIVVQPGE 209 >gi|169633405|ref|YP_001707141.1| putative repressor protein from bacteriophage [Acinetobacter baumannii SDF] gi|169152197|emb|CAP01101.1| putative repressor protein from bacteriophage [Acinetobacter baumannii] Length = 254 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/255 (12%), Positives = 74/255 (29%), Gaps = 55/255 (21%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I + LT LA+ G+ + ++ P + + K Sbjct: 1 MKKL--ETMGQRIRALRREKKLTQGDLAKIVGVSAPNVTGWEKDAY-----APKADPLSK 53 Query: 61 ILAATNETI-------------------------------------CQLLDLPFSDGRTT 83 + A + + + + + Sbjct: 54 MAAYFGVSTSYITNGDESGPQLDSGGAQLNVLDIEAFKQKYNIPDSEEAVKFVQTPTKPF 113 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 +++ +P+ + G G+F + V + + K Sbjct: 114 PIQKRYVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPT----------HTAGPRAYGIKGT 163 Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 SM P R G ++ + ++ + + + + G K I + L+++N Sbjct: 164 GDSMFPAIRNGWYVVCDPDAELVPTEFVQVCLKDGRCTIKEFIGIHNGVLSLIAVNGG-E 222 Query: 204 VDTVEMSDIEWIARI 218 EM ++E IA I Sbjct: 223 RFFFEMDEVESIAAI 237 >gi|289647504|ref|ZP_06478847.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 2250] Length = 202 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E + E L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEARPDESSLPVI-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + + + + SM + GD+L +++ +V G ++ + Sbjct: 94 AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREVRNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ D Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187 >gi|294678447|ref|YP_003579062.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477267|gb|ADE86655.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 249 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 59/241 (24%), Gaps = 41/241 (17%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + L+ L G+ + + E PS + + + Sbjct: 8 RLSSWRKEQKLSQRALGSVLGVSQGYISDIESGRSE-----PSRNFLQALTERFGVSADW 62 Query: 72 LLDLPFSDG-----------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +L + + G+ Sbjct: 63 ILYGVGLPQTERSGGFEARKPGKRIEPPDLGRPLSGDFRFADEDFFLIERMDLDVSAGHG 122 Query: 115 W--------NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + +P + + + + SM P G +++L+ +++ Sbjct: 123 IVPIPGAETERIALPRSMFLRSRL--TPDFTVLVRVKGDSMAPTIPDGALILLDCSVRRV 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRR------GRSIDLMSLNCCYPVDTV---EMSDIEWIAR 217 + G K L+ + + L+S N +P + EM + R Sbjct: 181 DRAGIFAFSLDGQSYVKRLVPSGTMADGRPQMLMLVSDNPAFPPVALAGPEMDRLLIAGR 240 Query: 218 I 218 + Sbjct: 241 V 241 >gi|34556743|ref|NP_906558.1| hypothetical protein WS0307 [Wolinella succinogenes DSM 1740] gi|34482457|emb|CAE09458.1| hypothetical protein WS0307 [Wolinella succinogenes] Length = 218 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 5/213 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E + + L R L + ++ R + P E + Sbjct: 4 NEIIEKLKDILSEEKEGQKVLDRDVALAL-HIHPQSFACMKSRQKIPYEEILAFCAKRKI 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + T + I + +GG + + + Sbjct: 63 SANWLFYNQAPESLIDTTNQYCYIRYFSQVHASAGGGAFNDT----EACERIKLDAFWVE 118 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 G Q SM P GD++ ++ + + + I K L Sbjct: 119 RLGGEKEIKQIEAIAVTGDSMEPTLEDGDLIFIHRQKRQISKGGIFVIQTPHGIFVKRLQ 178 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 R +D++S N YP T+E IE I R++ Sbjct: 179 ERLDGGVDILSDNSLYPTQTLERDGIEVIGRVV 211 >gi|325924503|ref|ZP_08186022.1| SOS-response transcriptional repressor, LexA [Xanthomonas gardneri ATCC 19865] gi|325544998|gb|EGD16333.1| SOS-response transcriptional repressor, LexA [Xanthomonas gardneri ATCC 19865] Length = 213 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + +AR G + E++ + Sbjct: 6 TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G + P+ + P G + Sbjct: 54 AIRRVPGQARGIRLAGRGTQSRTPPASEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|120601667|ref|YP_966067.1| phage repressor [Desulfovibrio vulgaris DP4] gi|120561896|gb|ABM27640.1| putative phage repressor [Desulfovibrio vulgaris DP4] gi|311234720|gb|ADP87574.1| putative phage repressor [Desulfovibrio vulgaris RCH1] Length = 244 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 55/241 (22%), Gaps = 28/241 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T ++ + I LA AG+ + K R+PS ++ ++ Sbjct: 7 TVTDGDELQQFIAEAIALVG-GVRALASIAGVSERTVYAWKNGE-----RFPSRTNLNRL 60 Query: 62 LAATNETICQ---------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 Q + ++ G Sbjct: 61 SEHLEHLSRQGYSPSAPQPHWRALRERMPGSYAPQQPDDTDRLTEEFVFVDKAEARPSAG 120 Query: 113 NKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + SM GD++++N Sbjct: 121 GGSLETSARAETRYAFRLDWVLQKTPTSEGLRMMEVAGRSMENTLHNGDLVLVNERDVHL 180 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS----DIEWIARILW 220 DR+ + +I K N Y +++ D E I R+LW Sbjct: 181 VEDRVYVVRVHDEIYVKRFAR-TPGCYHFRGDNRELAYQDISIDPRDENLDWEVIGRVLW 239 Query: 221 A 221 A Sbjct: 240 A 240 >gi|254362146|ref|ZP_04978263.1| possible bacteriophage transcriptional regulator [Mannheimia haemolytica PHL213] gi|153093712|gb|EDN74659.1| possible bacteriophage transcriptional regulator [Mannheimia haemolytica PHL213] Length = 243 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 21/235 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESI 58 M + ++ + R+ + + S LA + G+ + + K G+ + + Sbjct: 1 MRPLKEIR-YDNLLRLIDEAK-STSDLANRTGIAVSYLLQIKNKNAIQNGKPKGIGDKIA 58 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----------- 107 K+ N+ L + + + Sbjct: 59 AKLEDGMNKPRGWLDQIHSEQSNLINSRIGNEEQKLQEQDLNDFIIIDVLDVSASAGFGS 118 Query: 108 -VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 VPE A SM P + GD+L ++ ++ Sbjct: 119 SSELVEVVNQMRYVPEQFYSLFRNMA-PRYIRIINLSGDSMYPTFSSGDMLFVDISVNEF 177 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARI 218 GD + + G + K L G I ++S N Y ++ + AR+ Sbjct: 178 TGDGVYVFTYKGHLYVKRLQ-NTGDQILVISDNKLYEKWSITEENQDQLFIHARV 231 >gi|150396878|ref|YP_001327345.1| putative phage repressor [Sinorhizobium medicae WSM419] gi|150028393|gb|ABR60510.1| putative phage repressor [Sinorhizobium medicae WSM419] Length = 233 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 38/241 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT H +I E + M +L+P + KAGL + K R++ P+ +++ Sbjct: 1 MTETIHDRIKERLRIM----DLSPQAASMKAGLSKDTLRKLL----ANRDQLPTGKTLSA 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP---------- 110 + A + LL S + ++E+ + + Sbjct: 53 LAPALEVSEQWLLTGQDSGPSQPVQPQQEVRVANIELPTNSAMPKDVPVLGTAAGSHHRG 112 Query: 111 ----TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 T + + V P IY+ + +SM P Y +GD++ ++ Sbjct: 113 AFQLTSDAIDYVRRPPALMGTKDIYS-------LYVEGSSMEPQYWQGDLVYVHPHKPAR 165 Query: 167 CGDRLLIKPRTG--------DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 GD ++++ R G + + + R G ++ + N ++ I ++ Sbjct: 166 SGDAVVVQCRIGDEEPDGTVEATIGLYVRRTGEALIIRKHNP-PAEIEIKNEAIISYHKV 224 Query: 219 L 219 L Sbjct: 225 L 225 >gi|319757788|gb|ADV69730.1| phage repressor protein [Streptococcus suis JS14] Length = 229 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 65/223 (29%), Gaps = 23/223 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + S +A K G++ S++K + + S +I KIL Sbjct: 6 RLKEKRIERKFNQSEIAYKLGINRASYSKWESGKSIPNQKNLS--AIAKILDVPVTYFES 63 Query: 72 LLDLPFSDGRTTEKKEKEIPLL-----------YFPPSGSGGFFDSGVFPTGNKW---NT 117 ++ + + T + + P S G + Sbjct: 64 EYNIVNNYLQLTPGNQLKAEDYVEELLLSQQTSNVIPLFSVQVLSDIQLSAGLGEGFFDE 123 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + S D + SM P+Y+ G++ ++ S G + Sbjct: 124 FETETVYSDEEQY----GYDIAAWIEGDSMEPVYKSGEVALIRSNGFDYDG-AVYALSWN 178 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + K L ++SLN YP + + + + ++ Sbjct: 179 DSVYIKKLYRDEDG-FRMVSLNKNYPEKFIPYEDEPKIVGLVV 220 >gi|213971961|ref|ZP_03400059.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv. tomato T1] gi|213923276|gb|EEB56873.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv. tomato T1] Length = 148 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 6/143 (4%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG-IYAIQTQDTRHKT 142 + I + + + S G + + V G ++ Sbjct: 1 MQSLGFITIPHLDVAASMGSGNVPPDSQIEVIKDITVHLDWLKTQGLAFSRIENLAIITG 60 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM +R GD L+++ I D + + GD+ K L G ++ ++S N Y Sbjct: 61 DGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTLDGDLYIKRLQRMTGGALRMISDNPLY 120 Query: 203 PVDTVEMSD---IEWIARI--LW 220 P +E +D + AR+ +W Sbjct: 121 PAIIIEGADLTKVHIQARVLLVW 143 >gi|15676461|ref|NP_273600.1| putative repressor protein [Neisseria meningitidis MC58] gi|7225782|gb|AAF40984.1| putative repressor protein [Neisseria meningitidis MC58] gi|261393074|emb|CAX50669.1| putative transcriptional regulator [Neisseria meningitidis 8013] gi|316985422|gb|EFV64370.1| peptidase S24-like family protein [Neisseria meningitidis H44/76] gi|325139792|gb|EGC62325.1| putative transcriptional regulator [Neisseria meningitidis CU385] gi|325200756|gb|ADY96211.1| putative transcriptional regulator [Neisseria meningitidis H44/76] Length = 228 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 18 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132 K+ G + + Sbjct: 73 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N D L + +++ K L G Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 191 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 I+++S N YP + + D+E I R+ W Sbjct: 192 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 223 >gi|330970822|gb|EGH70888.1| peptidase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 203 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 24/211 (11%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL- 75 E ++ +A + G+ P + R P E I + L I Sbjct: 1 METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55 Query: 76 --PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIYA 132 P + + G + V P + +T + + Y Sbjct: 56 SEPGMHNVESTVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISD--------YK 107 Query: 133 IQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLIS 187 + + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 108 AKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVE 167 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 168 D-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196 >gi|261369111|ref|ZP_05981994.1| repressor protein CI [Subdoligranulum variabile DSM 15176] gi|282568739|gb|EFB74274.1| repressor protein CI [Subdoligranulum variabile DSM 15176] Length = 215 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 59/213 (27%), Gaps = 13/213 (6%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112 I K+ + + + + G F F G Sbjct: 66 LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + S ++ T P + G +++++ V GD + Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 + + K LI G+ L LN YP+ Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMI 214 >gi|254714851|ref|ZP_05176662.1| Repressor protein CI [Brucella ceti M644/93/1] gi|261322650|ref|ZP_05961847.1| lambda repressor [Brucella ceti M644/93/1] gi|261295340|gb|EEX98836.1| lambda repressor [Brucella ceti M644/93/1] Length = 225 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 59/213 (27%), Gaps = 13/213 (6%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112 I K+ + + + + G F F G Sbjct: 66 LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + S ++ T P + G +++++ V GD + Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 + + K LI G+ L LN YP+ Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMI 214 >gi|298370234|ref|ZP_06981550.1| repressor protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281694|gb|EFI23183.1| repressor protein [Neisseria sp. oral taxon 014 str. F0314] Length = 231 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 24/215 (11%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 18 QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGEPFPHS 72 Query: 84 E-------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN------TVGVPEIRSPHNGI 130 + G+ + R Sbjct: 73 HLATESSATISDTLGNPVDIDEFVFIPRYDIQAAAGHGRLAGNEKPMFAMAFRRDWIENY 132 Query: 131 YAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SM + GD +++N D L + +++ K L Sbjct: 133 VTRSTKNLSVISVKGDSMEGVLNDGDSILINHGETT-PRDGLYVLRINENLLVKRLQVMP 191 Query: 190 GRSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220 G I+++S N YP +++ D+ I R+ W Sbjct: 192 GGIINVISANDAYPTFEIDLNHLTDDVAIIGRVEW 226 >gi|172040564|ref|YP_001800278.1| LexA repressor [Corynebacterium urealyticum DSM 7109] gi|171851868|emb|CAQ04844.1| LexA repressor [Corynebacterium urealyticum DSM 7109] Length = 284 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 63/222 (28%), Gaps = 20/222 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNR----WPSTES 57 ++I E I PS +A GL TS + K+ +G R P Sbjct: 67 QRRILEVIKDSTVLRGYPPSIREIADAVGLQSTSSVSYQLKQLEEKGYLRREDNKPRAFD 126 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + TN + + + P + P + + N Sbjct: 127 VRGYEDHTNPGLVTPVPRKQPKPTPA-PVSDDRPAATYVPVVGQIAAGNPILAEQNIEAQ 185 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 +P + + + SM D +++ S + GD + Sbjct: 186 FPLPAELVGTSD------ELFLLQVVGESMRDAGIYDSDWVVVRSQPTADQGDFVAAMID 239 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K L + L+ N + ++ + + ++ Sbjct: 240 -GEATVKELHHDEDG-VWLLPHNDLFEPI--AGNEAQILGKV 277 >gi|117925395|ref|YP_866012.1| SOS mutagenesis protein UmuD [Magnetococcus sp. MC-1] gi|117609151|gb|ABK44606.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Magnetococcus sp. MC-1] Length = 238 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 10/220 (4%) Query: 8 KIWEAIDRMAERHNLTP--SGLARKAGLDPTSFN-KSKRFGIEGRNR-WPSTESIFKILA 63 ++W+ + H L P + L+ + G+ P S + + + +G R P L Sbjct: 12 RLWQTLCAHITTHGLPPTVAELSAQLGIKPPSVHAQLQALARKGWLRHTPHKARSLTPLD 71 Query: 64 ATNETICQLLDLPFSDGRTTE--KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV- 120 + + + + R + G Sbjct: 72 EAGQPLLHPKESTPMESRPIMSAPPRVTQRFRPAEQARFTIPLAGSRVAAGFPSPADDFV 131 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + SM GDIL+++ ++Q G ++ G+ Sbjct: 132 EAQLDLNQHLVKHPAATFFVRVAGESMIEAGIHPGDILVVDRSLQPESGQIVIAVLD-GE 190 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L R + LM N + V I ++ Sbjct: 191 LTVKRLEKR-AGKLFLMPANRNFTPIEVGAEADLLIWGVV 229 >gi|290581291|ref|YP_003485683.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254998190|dbj|BAH88791.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 228 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 15/218 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQ 71 + ++ L+ + A K G+ S+ + + + + K+ +A + Sbjct: 7 LKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYFLSQHD 66 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTVGVPE 122 ++++ + + K + + G ++ + Sbjct: 67 IVEIYTRLNESNKTKTLKYSQHLLEQQDKERNLMKNKRYPYRVYEKLSAGTGYSY--FGD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P++ G++ ++ G + G Sbjct: 125 GNFDTVFYDEEIDHDFASWIFGDSMEPIFLNGEVALIKQTGFDYDG-AIYAIDWDGQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I I+ Sbjct: 184 KKVYREETG-LRLVSLNKKYADKFAPYDENPRIIGLIV 220 >gi|1196926|gb|AAA88585.1| unknown protein [Streptococcus mutans] Length = 228 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 15/218 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQ 71 + ++ L+ + A K G+ S+ + + + + K+ +A + Sbjct: 7 LKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYFLSQHD 66 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTVGVPE 122 ++++ + + K + + G ++ + Sbjct: 67 IVEIYTRLNESNKTKTLKYSQHLLEQQDKKRNLMKNKRYPYRVYEKLSAGTGYSY--FGD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D SM P++ G++ ++ G + G Sbjct: 125 GNFDTVFYDEEIDHDFASWIFGDSMEPIFLNGEVALIKQTGFDYDG-AIYAIDWDGQTYI 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+SLN Y + I I+ Sbjct: 184 KKVYREETG-LRLVSLNKKYADKFAPYDENPRIIGLIV 220 >gi|59801770|ref|YP_208482.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae FA 1090] gi|59718665|gb|AAW90070.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae FA 1090] Length = 236 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 26 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 80 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134 K+ G + + + I+ Sbjct: 81 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVGHEEPVFTMAFRRHWIENYVTR 140 Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N D L + +++ K L G Sbjct: 141 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 199 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 I+++S N YP + + D+E I R+ W Sbjct: 200 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 231 >gi|66046512|ref|YP_236353.1| LexA repressor [Pseudomonas syringae pv. syringae B728a] gi|63257219|gb|AAY38315.1| Peptidase S24, LexA repressor [Pseudomonas syringae pv. syringae B728a] gi|330972034|gb|EGH72100.1| LexA repressor [Pseudomonas syringae pv. aceris str. M302273PT] Length = 202 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + + E Sbjct: 1 MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E ++ + L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEARQDDSSLPVI-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + + + + SM + GD+L +++ + G ++ + Sbjct: 94 AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V++ D Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187 >gi|332361288|gb|EGJ39092.1| phage transcriptional repressor [Streptococcus sanguinis SK1056] Length = 230 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 24/226 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + S LA ++ S+NK + + S ++ +IL Sbjct: 4 GSRLKECRMEKHYSQSELANLLKINRASYNKWETGKSVPNQKNLS--ALARILDVPTTYF 61 Query: 70 CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115 + + + + + + + P + G Sbjct: 62 ESEYKIVNTYLQLSTENQGKVDEYAEGLLQAQQSHDKVVPLFAVEVLSDIALSAGLGESL 121 Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + + D + SM P+Y G++ ++ ++ G + Sbjct: 122 FDEYDTETVYAEEEQY----GYDIAAWIKGDSMEPIYLDGEVALIRASGFDYDG-AVYAL 176 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + K L ++SLN YP + D + ++ Sbjct: 177 SWNDSVYIKKLYREEHG-FRMVSLNDNYPDKWIPYEDNPRIVGLVV 221 >gi|302386388|ref|YP_003822210.1| transcriptional repressor, LexA family [Clostridium saccharolyticum WM1] gi|302197016|gb|ADL04587.1| transcriptional repressor, LexA family [Clostridium saccharolyticum WM1] Length = 206 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 70/220 (31%), Gaps = 35/220 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++I E I + P+ + L TS + + +G R T+ Sbjct: 9 KQQEILEYIKETILKKGYPPAVREICEAVCLKSTSSVHSHLETLEEKGYIRRDPTK---- 64 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + +++ + T ++ +PLL +G ++ N N + Sbjct: 65 ---------PRTIEIIDDCFQLTRREVVNVPLLGTVAAGQP------LYAEENIENYYPI 109 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P P+ + K + SM+ +GD +I+ + G+ ++ Sbjct: 110 PADLLPN-------AETFMLKVKGNSMINAGILEGDQIIVEHCPTAHNGEIVVAL-VEDS 161 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N V+ +E + +++ Sbjct: 162 ATVKRFFKEK-GHYRLQPENDSMDPIIVDN--VEILGKVI 198 >gi|325690230|gb|EGD32234.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 225 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 60/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NLT + + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLTQASIYQELGISRKAYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSALYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|24374193|ref|NP_718236.1| prophage MuSo2, Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] gi|24348706|gb|AAN55680.1|AE015706_8 prophage MuSo2, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] Length = 248 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 21/224 (9%) Query: 9 IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I DR+ E ++ A+K GL +PS + + + +N+ Sbjct: 25 IMRFPDRLKESIGDISIRSFAKKCGLSEGVMRNYLAGKT-----YPSLDKLALMAEVSNK 79 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---------WNTV 118 + L+ + + + + + G+ + Sbjct: 80 PLDWLVAGTEHNFNELNEPGSKYVIGINLEEYALIPGYRVQVSAGHGALNCDQQDPVRYL 139 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + G + + + SM P D L+++ + I Sbjct: 140 AFRRKWLKYRGF--EEHELAIVWAKGDSMEPTIHSNDTLVVHLGRNSPADGHIYIFRNGD 197 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 D+ K + S L+S N Y + + E + +++ Sbjct: 198 DLFVKRYQNAF-GSWRLISDNPVYDKLDIPKHEQHQFEVVGQVV 240 >gi|71736548|ref|YP_272952.1| prophage PSPPH01, Cro/CI family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557101|gb|AAZ36312.1| prophage PSPPH01, transcriptional regulator, Cro/CI family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 215 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 20/212 (9%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ E ++ +A + G+ P + R P E I + L I Sbjct: 10 RQVMETQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTS 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--Y 131 G + + Y P S P S I Y Sbjct: 65 IPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDY 118 Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186 + + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 119 KAKGKAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLV 178 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 179 ED-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 208 >gi|46581037|ref|YP_011845.1| transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450458|gb|AAS97105.1| transcriptional regulator, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 257 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 55/241 (22%), Gaps = 28/241 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T ++ + I LA AG+ + K R+PS ++ ++ Sbjct: 20 TVTDGDELQQFIAEAIALVG-GVRALASIAGVSERTVYAWKNGE-----RFPSRTNLNRL 73 Query: 62 LAATNETICQ---------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 Q + ++ G Sbjct: 74 SEHLEHLSRQGYSPSAPQPHWRALRERMPGSYAPQQPDDTDRLTEEFVFVDKAEARPSAG 133 Query: 113 NKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + SM GD++++N Sbjct: 134 GGSLETSARAETRYAFRLDWVLQKTPTSEGLRMMEVAGRSMENTLHNGDLVLVNERDVHL 193 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS----DIEWIARILW 220 DR+ + +I K N Y +++ D E I R+LW Sbjct: 194 VEDRVYVVRVHDEIYVKRFAR-TPGCYHFRGDNRELAYQDISIDPRDENLDWEVIGRVLW 252 Query: 221 A 221 A Sbjct: 253 A 253 >gi|315167306|gb|EFU11323.1| peptidase S24-like domain protein [Enterococcus faecalis TX1341] Length = 273 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 75/243 (30%), Gaps = 34/243 (13%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + N++ +A + G+ ++ + ++ IE +I KIL T E Sbjct: 33 NVGERMKLRRKELNISADKIANELGVSRSTIFRYEKGDIEKLPTE-RLITIAKILKTTPE 91 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN---------KWNTV 118 + + + + + T N TV Sbjct: 92 ELMGWNTSNDFSSIEAIYNKLDTTRKQKVCRYAEHQLEEQKRNTSNNKVIAFMPTNTTTV 151 Query: 119 GVPEIRSPHNGIY-------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + S G + A D + SM P ++ G+I+ + + + Sbjct: 152 ELSGRLSAGGGAFNDKGCIEIVEVGSAPSQYDLAFQVCGDSMYPTFQDGEIVFVKETMDI 211 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSDI-EWIA 216 G G+ K + G + L+SLN YP + D+ I Sbjct: 212 YNGQIG-AIEINGEAFIKKMY-LEGTRLRLVSLNTEIDEDGNRLYPDFYADELDVLYVIG 269 Query: 217 RIL 219 R++ Sbjct: 270 RVI 272 >gi|269214789|ref|ZP_05987153.2| putative repressor protein [Neisseria lactamica ATCC 23970] gi|269209033|gb|EEZ75488.1| putative repressor protein [Neisseria lactamica ATCC 23970] Length = 236 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F + G P +E++ KI +I LL S Sbjct: 26 QAKIASDIEMTIAGFGRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPDE 80 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134 K+ G + + + I+ Sbjct: 81 APKKSFAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTC 140 Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N + +++ ++ K L G Sbjct: 141 DVKNLSVISVKGDSMEGVLNDGDSILVNHSENTPKDGLYVLRINEN-LLVKRLQIVPGGI 199 Query: 193 IDLMSLNCCYPVDTV----EMSDIEWIARILW 220 I+++S N YP + D+E I R+ W Sbjct: 200 INVISANEAYPAFEINLNHPADDVEIIGRVEW 231 >gi|300772908|ref|ZP_07082777.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759079|gb|EFK55906.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 63/221 (28%), Gaps = 16/221 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + ++ LT A + S + E P E + KI + Sbjct: 3 NIASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAE-----PKYELLKKIAEYFDL 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP-----PSGSGGFFDSGVFPTG--NKWNTVGV 120 T+ +L + D + L G N + Sbjct: 58 TMDELANDVIDDKWKPTPRSNASNLRVLSVTVDQQDRENIELVPVKASAGYLNGYGDPEY 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTG 178 + Q + + SMLPL I+ + + + G +I R Sbjct: 118 VAELPKFSLPMFNQGTYRAFEIKGDSMLPLPSGSVIIGEYVENWHDIKPGQTYIIVSREE 177 Query: 179 DIVAKV--LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +V K + + + L+S N Y V DI + + Sbjct: 178 GVVYKRIAFKYKEEKGLKLVSDNKTYEAYWVGSEDILEVWK 218 >gi|325677864|ref|ZP_08157506.1| repressor LexA [Ruminococcus albus 8] gi|324110418|gb|EGC04592.1| repressor LexA [Ruminococcus albus 8] Length = 194 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 48/183 (26%), Gaps = 6/183 (3%) Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 F K EG P+ + + + +D EK + + + Sbjct: 11 FEFIKSRVEEGYP--PTVREVCNYFGFKSTSTAHRYIKSLTDKGFLEKGDNQNRAIRLVG 68 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 G G + + K + SM+ GD+ Sbjct: 69 GSGMLIPLVGTVTAGTPITAIEYVSEYISFQPARNYSSPLFALKVRGESMINAAILDGDL 128 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +++ + G+ ++ D K L N V+ ++ + Sbjct: 129 VVVEQTPVASNGEIVVAMVDGQDATVKTFYK-EDGHFRLQPENDHMEPIIVDS--VDILG 185 Query: 217 RIL 219 +++ Sbjct: 186 KVV 188 >gi|226943569|ref|YP_002798642.1| LexA repressor [Azotobacter vinelandii DJ] gi|259494469|sp|C1DQZ4|LEXA_AZOVD RecName: Full=LexA repressor gi|226718496|gb|ACO77667.1| SOS transcriptional repressor, LexA [Azotobacter vinelandii DJ] Length = 202 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +AR+ G + + E Sbjct: 1 MHKLTPRQVEILAFIKRCLEENGYPPTRAEIARELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K +A +E S G G Sbjct: 45 EHLKAMARKGAIEMTPGASRGIRIPGSE-----------VESEPTSLPIVGRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + GD+L +++ + + G ++ + Sbjct: 94 AQQHIEETCQIDPGFFHPRADYLLRVRGMSMKDVGIYDGDLLAVHTCREAHNGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + +++++ Sbjct: 154 N-DEVTVKRFRRD-GDKVWLIAENPEFSPLEIDLTE 187 >gi|226357661|ref|YP_002787401.1| repressor lexA [Deinococcus deserti VCD115] gi|226319652|gb|ACO47647.1| putative repressor lexA [Deinococcus deserti VCD115] Length = 211 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 34/219 (15%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGL---ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + + + I +AI R+ TP+ L A+ GL + + + Sbjct: 6 TRTRRLILDAILRLQAED--TPATLGAVAQATGLTKQAVS--------------YQTVLL 49 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + L + PL+ +G G+ V Sbjct: 50 REAHYLEPAASRYAPLILTSKARALIGGGGFPLVGEIAAGQP----------GHAEQNVE 99 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR-LLIKPRT 177 + + + ++ D + + SM+ + DI+I+ V GD +++ P Sbjct: 100 --AYITRLDQVIDMKEGDYLLRVRGDSMIGVGIYPQDIVIVRPNETVPNGDIAVVLLPGE 157 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 K + + I L S N YP T D+ Sbjct: 158 STATLKRVEHQ-NSKITLHSANPDYPPMTFPARDVRIQG 195 >gi|197118143|ref|YP_002138570.1| LexA repressor [Geobacter bemidjiensis Bem] gi|226694234|sp|B5EA68|LEXA_GEOBB RecName: Full=LexA repressor gi|197087503|gb|ACH38774.1| LexA repressor [Geobacter bemidjiensis Bem] Length = 201 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 39/226 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + I R E P+ +A + G+ T Sbjct: 1 MEQLTARQTEVLQIITRHLETCGYPPTLREIAAQLGIS-------------------GTL 41 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K L A + + G T + + L G + Sbjct: 42 GVMKHLEALEKKGYLRRQEGSTRGITLCNQSQAASLP-IVGVVRAGLLHPAIQDI----- 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + + SM+ +GD+ ++ + D ++ Sbjct: 96 -----EGHFAIDRSQLASGGAFFLRVKGDSMVHAHIVEGDLALVRPQPHASNRDIVVAMV 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE--MSDIEWIARIL 219 G+ K I L N Y +E ++ + +++ Sbjct: 151 D-GEATLKRFYR-EADRIRLQPENPNYEPIIIEKGEQEVSIVGKVV 194 >gi|256828866|ref|YP_003157594.1| putative phage repressor [Desulfomicrobium baculatum DSM 4028] gi|256578042|gb|ACU89178.1| putative phage repressor [Desulfomicrobium baculatum DSM 4028] Length = 209 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 19/213 (8%) Query: 14 DRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 R+A+ ++ LA G++P + ++R I AA L Sbjct: 8 QRVAKTTGISTQKELAGLLGIEPAAI-------TMAKSRGVPKSWGLSIAAAFGVNPVWL 60 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + +P + GG F+ + + G Sbjct: 61 KTGSGPVYQNEQASTVLVPKVAAKACAGGGSFELSDM----IVDELPFDRSWLSKKG--- 113 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM P GD ++++ + + L + +I K + R Sbjct: 114 NPGRMVAMEVIGDSMSPELEPGDNILIDQSQNQVADNNLYVVGLADNIQVKRVQIRP-GL 172 Query: 193 IDLMSLNCCYPVDTVEMSDI---EWIARILWAS 222 + L S N Y T++ +I I R+LW+S Sbjct: 173 VVLFSTNQRYSPVTLQGDEIDTLRVIGRVLWSS 205 >gi|227113391|ref|ZP_03827047.1| Repressor protein CII [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 237 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 65/233 (27%), Gaps = 23/233 (9%) Query: 2 TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + +++ A + + + N+T +A + G+ + I + Sbjct: 5 KTLTREQLEAARKLKALYQSKKKELNVTQYTIADELGISQGAVGHYLNGRI-----ALNV 59 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 I + D + + G + G Sbjct: 60 PVASGFSRILQIPISEFSPELARDAASYASTVDSNVAFHGIHDPKGEYPVISWVSAGEWS 119 Query: 116 NTVGVPEIRSPHNGIYAIQTQD----TRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167 + P R + Y + SM +G +++++ ++ Sbjct: 120 EAIE-PYHRRAIDRWYGTTVDCSDSSFWLDVKGDSMTSPVGLSIPEGMVILVDPEVEPIN 178 Query: 168 GDRLLIKPR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ K + K + G L LN YP+ T+ + I ++ Sbjct: 179 GKLVVAKLDGENEATFKKYVEDAGHKF-LKPLNPQYPLITINGN-CRIIGVVV 229 >gi|254449351|ref|ZP_05062795.1| prophage MuMc02, peptidase, family S24 [gamma proteobacterium HTCC5015] gi|198261055|gb|EDY85356.1| prophage MuMc02, peptidase, family S24 [gamma proteobacterium HTCC5015] Length = 230 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 72/222 (32%), Gaps = 14/222 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H++ + + ER + G+ + + ++ S + + ++ A Sbjct: 13 HQR-GQRLRSERERLHKNQDEFGAIGGVKRNAQGEYEKGKA------FSVDYMERL-EAI 64 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 +++ G + P + + R Sbjct: 65 GVDWRYVMNGGDVVGIREPAAAYDYSDYVRLPLFDVQAAAGNGLVAQAEELVEFLSFDRD 124 Query: 126 PHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + SM+P GD+++LN+ D + + G ++ K Sbjct: 125 WLRNALKVSPKDLVMIEVDGESMVPTLSPGDVIMLNTLDTGVVRDGIYVLLVDGALLVKR 184 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDI-----EWIARILWA 221 L S G ++++S N +P T++ D+ I R++W+ Sbjct: 185 LQSLPGGVLNVISDNQAFPTWTMKRDDLGAETQRVIGRVVWS 226 >gi|90406768|ref|ZP_01214961.1| LexA repressor [Psychromonas sp. CNPT3] gi|90312221|gb|EAS40313.1| LexA repressor [Psychromonas sp. CNPT3] Length = 209 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 64/215 (29%), Gaps = 31/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + I E + P+ LA G E + + + Sbjct: 1 MKELTKRQNEVLDVIKACIEETGMPPTRVELANLLGFRSA-------NAAEEHLKALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 KIL+ T+ I + + + G G G+ Sbjct: 54 GAIKILSGTSRGIRIIAEHKSNQ-----------------VVVDKGLPLVGQVAAGSPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E+ + D + Q SM + GD+L ++ VN G ++ + Sbjct: 97 ATEHIEMHYAVDPALFHPRADFLLRVQGESMKNIGIMDGDLLAVHKTQDVNNGQVVVARI 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K G ++ L N + V++ Sbjct: 157 -EDEVTVKRFYR-EGNAVLLKPENEDFSTIKVDLE 189 >gi|225024556|ref|ZP_03713748.1| hypothetical protein EIKCOROL_01431 [Eikenella corrodens ATCC 23834] gi|224942707|gb|EEG23916.1| hypothetical protein EIKCOROL_01431 [Eikenella corrodens ATCC 23834] Length = 279 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 74/276 (26%), Gaps = 72/276 (26%) Query: 10 WEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + DRMA+ L S LAR+AG+ P S + + P ++ ++ ATN Sbjct: 6 LQFADRMAKILELFNGNVSELARQAGIAPPSAQRWIDGESD-----PKMSNLLRLADATN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG------------------------ 102 + L + + KE Y G Sbjct: 61 VNLLWLATGQGPMFASGANRLKEPQASYNVSEQDEGRRLLQQRLAETKNTLNNIRKAERG 120 Query: 103 ------------------------FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT--- 135 G+ +P + ++ Sbjct: 121 ESTGEGCAFDVQGRPVDIDEFVFIPLYDVALSAGHGAWADDIPPKSTLAFRRDWLEAFVT 180 Query: 136 ----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + + SM + D ++++ + D L +I K + Sbjct: 181 TDFNNLSVVMVKGDSMAGVLNDKDAILVDHSRTEAS-DGLYALRIGNEIFVKRVQRLP-H 238 Query: 192 SIDLMSLNCCYPVDTVEM-------SDIEWIARILW 220 ++ + S N Y V + S + I +++W Sbjct: 239 ALLVTSENPQYKPFEVPLQNGDNSDSSVSIIGKVVW 274 >gi|162146322|ref|YP_001600781.1| peptidase [Gluconacetobacter diazotrophicus PAl 5] gi|161784897|emb|CAP54440.1| putative peptidase [Gluconacetobacter diazotrophicus PAl 5] Length = 212 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 60/206 (29%), Gaps = 17/206 (8%) Query: 28 ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKE 87 A +G+ S N R + F+I A ++ L+ S Sbjct: 9 AAASGVPLGSLNNYLAG------REMKASTAFRIARACGVSLEWLVTGADSGTGPVPDAA 62 Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 + L P SG T V ++A + + + SM Sbjct: 63 QFDEYLVVPRYDDELAAGSGSVATDQAPVEVIGVGRSLLPQSVWAARDRLVALTVRGDSM 122 Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 P GD++ ++ A + + + ++ K L R + + S N Y V Sbjct: 123 EPTLSNGDLVFVDRARERLVSGAIYVIRAGEQLLVKRLEQRIDGDLVVTSDNKRYSEQVV 182 Query: 208 EMSDIE-----------WIARILWAS 222 + RI+W S Sbjct: 183 SAEQARQLWNGGNAPATIVGRIVWRS 208 >gi|298485320|ref|ZP_07003412.1| C2 protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160170|gb|EFI01199.1| C2 protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 215 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 63/212 (29%), Gaps = 20/212 (9%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ E ++ +A + G+ P + R P E I + L I Sbjct: 10 RQVMETQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTS 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--Y 131 G + + Y P S P S I Y Sbjct: 65 IPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDY 118 Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186 + + + SM +G ++++++ ++ G ++ P + + K L+ Sbjct: 119 KAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGVEPTAGKLVIAKLPESNEATFKKLV 178 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 179 ED-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 208 >gi|295109993|emb|CBL23946.1| SOS-response transcriptional repressor, LexA [Ruminococcus obeum A2-162] Length = 206 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 51/218 (23%), Gaps = 30/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I + I P+ + L TS S S + L Sbjct: 9 KQQEILDYIKNEILNRGFPPAVREICEAVNLKSTS----------------SVHSHLEAL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P G G V E Sbjct: 53 EKNGYIRRDATKPRAIEIIDDNFNLVRREVVNVPLV--------GTVAAGQPILAVENIE 104 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P Y Q K + SM+ GD +++ + GD ++ Sbjct: 105 GYFPVPAEYMPNAQSFMLKVKGDSMVNAGIFDGDQVLVKQQASASNGDIVVAL-VEDSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V DI+ + ++ Sbjct: 164 VKTFYK-EDGYYRLQPENDSMDPILVH-GDIQILGKVF 199 >gi|33592856|ref|NP_880500.1| LexA repressor [Bordetella pertussis Tohama I] gi|44888097|sp|Q7VRY0|LEXA_BORPE RecName: Full=LexA repressor gi|44888099|sp|Q7WCK0|LEXA_BORBR RecName: Full=LexA repressor gi|33572504|emb|CAE42080.1| LexA repressor [Bordetella pertussis Tohama I] gi|332382269|gb|AEE67116.1| LexA repressor [Bordetella pertussis CS] Length = 216 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 24/215 (11%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 T + ++I + I + R P + +A+ G R P+ Sbjct: 3 TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 45 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 A I L P G G+ Sbjct: 46 DHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILA 105 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 E + QT D K + SM +GD+L + A + G ++ + Sbjct: 106 SEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-L 164 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + I+L+ N + V +D Sbjct: 165 GDEVTVKRLQRQ-NGRIELLPENPDFAPIVVANTD 198 >gi|194099219|ref|YP_002002310.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae NCCP11945] gi|239999505|ref|ZP_04719429.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae 35/02] gi|240014682|ref|ZP_04721595.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae DGI18] gi|240017129|ref|ZP_04723669.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae FA6140] gi|240081233|ref|ZP_04725776.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae FA19] gi|240113444|ref|ZP_04727934.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae MS11] gi|240116210|ref|ZP_04730272.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae PID18] gi|240118494|ref|ZP_04732556.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae PID1] gi|240121204|ref|ZP_04734166.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae PID24-1] gi|240126341|ref|ZP_04739227.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae SK-92-679] gi|240128702|ref|ZP_04741363.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae SK-93-1035] gi|254494221|ref|ZP_05107392.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|260439977|ref|ZP_05793793.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae DGI2] gi|268595316|ref|ZP_06129483.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268597344|ref|ZP_06131511.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268599518|ref|ZP_06133685.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268601872|ref|ZP_06136039.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268604203|ref|ZP_06138370.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268684927|ref|ZP_06151789.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268687089|ref|ZP_06153951.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043265|ref|ZP_06568988.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398584|ref|ZP_06642762.1| transcriptional regulator, repressor [Neisseria gonorrhoeae F62] gi|193934509|gb|ACF30333.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae NCCP11945] gi|226513261|gb|EEH62606.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|268548705|gb|EEZ44123.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268551132|gb|EEZ46151.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268583649|gb|EEZ48325.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268586003|gb|EEZ50679.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268588334|gb|EEZ53010.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268625211|gb|EEZ57611.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268627373|gb|EEZ59773.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291012871|gb|EFE04854.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611055|gb|EFF40152.1| transcriptional regulator, repressor [Neisseria gonorrhoeae F62] gi|317164754|gb|ADV08295.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae TCDC-NG08107] Length = 228 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 18 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134 K+ G + + + I+ Sbjct: 73 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVGHEEPVFTMAFRRHWIENYVTR 132 Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N D L + +++ K L G Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 191 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 I+++S N YP + + D+E I R+ W Sbjct: 192 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 223 >gi|298209243|ref|YP_003717422.1| hypothetical protein CA2559_13403 [Croceibacter atlanticus HTCC2559] gi|83849170|gb|EAP87039.1| hypothetical protein CA2559_13403 [Croceibacter atlanticus HTCC2559] Length = 255 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 16/217 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ E +N T + A G+ T+ +R + S + I ++L N Sbjct: 10 KRFKQIREENNYTQTEFAELLGVKNTT-ADIERGRTK-----LSGKVIAELLRQFNVNPL 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + TT + +L + Sbjct: 64 WVFGDSTKKFLTTTNGDVSPRILTVDSDNEDAMVFVNQKAA-AGYPQNIHDVEWYQKLPA 122 Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVA 182 + I + + SM P + D ++ + + + + + ++ Sbjct: 123 FNIPLPQYRNATYRGFQVEGDSMTPNLQPEDWVLAKAVSNITDYNINKVHVVVLQDSVLV 182 Query: 183 KVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L + + L+S N Y TV + DI+ + ++ Sbjct: 183 KKLQKLPDPKKVLLVSFNEEYLPITVNVDDIQELWQV 219 >gi|301382113|ref|ZP_07230531.1| cI repressor protein [Pseudomonas syringae pv. tomato Max13] gi|302058983|ref|ZP_07250524.1| cI repressor protein [Pseudomonas syringae pv. tomato K40] Length = 262 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 65/223 (29%), Gaps = 29/223 (13%) Query: 22 LTPSGLARKAGLD--PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ-------- 71 L + + G + ++ ++ G + E++ K+ + Sbjct: 40 LNQAEVGALCGWNSGQSAVSQYL-----GGKLALNLEALIKLSEVLDFEPEDVSPTLGRG 94 Query: 72 -LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRSPHN 128 + + + + + + + G + V + + Sbjct: 95 VTRKKDSTGQGKNKSVDLSNEEEDGADNYAFIPQYTAMAAAGAGHDNPHVEIRSTLAFKK 154 Query: 129 GIYAI----QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAK 183 A SM P D+L+++S+ + +I+ + K Sbjct: 155 EWLASKGLQPRNLRVIYADGESMWPTINDQDVLLVDSSQVEPVDNGVFVIESGADGTLVK 214 Query: 184 VLISRRGRSIDLMSLNCC---YPVDTV---EMSDIEWIARILW 220 L+ + L+S N YP E ++ + + R++W Sbjct: 215 RLVRAPLQQWILLSDNTDKAAYPDRFYLRSESNEHQIVGRVIW 257 >gi|261351066|ref|ZP_05976483.1| repressor protein CI [Methanobrevibacter smithii DSM 2374] gi|288860198|gb|EFC92496.1| repressor protein CI [Methanobrevibacter smithii DSM 2374] Length = 212 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 58/211 (27%), Gaps = 13/211 (6%) Query: 2 TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + E L+ +A K G+ + + Sbjct: 6 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112 I K+ + + + + G F F G Sbjct: 66 LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + S ++ T P + G +++++ V GD + Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 + + K LI G+ L LN YP Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212 >gi|26988281|ref|NP_743706.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983026|gb|AAN67170.1|AE016345_5 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 283 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 5/190 (2%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 P+S + R +E + + E+ +I++A + F + Sbjct: 91 TPSSAADAVRKMLEKHGKGLTAEARQRIVSAVEHDPQGEKESGFLIAANPATRGDISIPQ 150 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYR 152 Y + G + V + E G+ Y SM Sbjct: 151 YDIRAAMGHGQVPAEYSE--IIRNVVISEDLLRDKGVNYTAPQSLAIITGWGQSMEGTIN 208 Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 D +I++ + G+ + + GD++ K L + + L+S N + D+ Sbjct: 209 DKDPVIVDRGVNDYAGEGVYVLTWHGDLLIKRLQRKDEDHLWLISDNPHNKDQQARIDDV 268 Query: 213 EWIARI--LW 220 A++ +W Sbjct: 269 TIHAKVLLVW 278 >gi|307321404|ref|ZP_07600802.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306892949|gb|EFN23737.1| putative phage repressor [Sinorhizobium meliloti AK83] Length = 257 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 76/252 (30%), Gaps = 43/252 (17%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR---------------- 49 K + E + + E+ +T AR AGL+ + F K +R G R Sbjct: 3 KTVIEKLKEIIEQKGMTYESAARAAGLERSYFRKLFERGGASPRGETLQKIAKGLDVSIT 62 Query: 50 ----------------NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 PS E + +++ T + + +P + Sbjct: 63 TLLSTTNKRPVVSSYDPDTPSGEDLEQLM--TIGSETGVRGIPTDASAQIDITGGMGGGG 120 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 S F + + +P G+ A Q SM P + Sbjct: 121 LSIVSEGVPGRHGMTFAAEHVRDYWRLPPPILSALGLSA--HDVAVFPVQGDSMQPTLDE 178 Query: 154 GDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRG-----RSIDLMSLNCCYPVDTV 207 GD++ ++ + + G +V K + +++ ++S N + Sbjct: 179 GDVVFIDTRHRWPSPPGLYAVLDEIGGVVVKRIEVSSPPGAEMQTVSVISDNPRHAKKEW 238 Query: 208 EMSDIEWIARIL 219 ++ + R+L Sbjct: 239 PAEELFIVGRVL 250 >gi|255531810|ref|YP_003092182.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344794|gb|ACU04120.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 258 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 62/221 (28%), Gaps = 14/221 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + ++ T A + + + E ++ + I + T + Sbjct: 3 NISSNLKYLRKKKGHTQQQFADAMQIKRSLIGAYEEDRAE--PKYDLLKKIAEYFDLTID 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + L + + Sbjct: 61 EFINENINDDWKPKPKSQGSNLRILSISVDKDDNENIEMVPVKASAGYLNGFADPQYIKE 120 Query: 128 NGIYAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTG 178 + + + SMLP + G +++ +++ V G+ +I RT Sbjct: 121 LPRFQLPLPFLKHGTFRAFEIVGDSMLP-IQPGSVIVAEYMDNWNDVKTGETYIIVSRTE 179 Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +V K + + + L+S N Y TV DI I + Sbjct: 180 GVVYKRAGNRFKENKELKLISDNKIYDPYTVAADDIMEIWK 220 >gi|294492930|gb|ADE91686.1| DNA-binding/peptidase S24 domain protein [Escherichia coli IHE3034] Length = 253 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 58/216 (26%), Gaps = 14/216 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------A 64 + ++ + ++ + L G+ + + R + L Sbjct: 31 KRLNELMTNKGISVTQLKSLVGVTYEMARRYTIGAA--KPRASVMNKLALALGVSASYLE 88 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + S T+ I +L S G + + + + Sbjct: 89 YGVGEREGCKEMASIPNPTKPDVYRIEVLDLSVSAGPGTYMLSDYV--DVLYAIEFTTEH 146 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + Q SM P GD L ++ +++ D + K Sbjct: 147 ARSLFGNRSQDDIKVMTVNGDSMSPTLVSGDRLFVDISVRNFQTDGVYSFVYGKTFHVKR 206 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIAR 217 L + G + ++S N Y ++ + + + Sbjct: 207 LQMQ-GNKLAVLSDNPAYEKWYIDEKSQDQLYVMGK 241 >gi|328957390|ref|YP_004374776.1| LexA repressor [Carnobacterium sp. 17-4] gi|328673714|gb|AEB29760.1| LexA repressor [Carnobacterium sp. 17-4] Length = 186 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 13/115 (11%), Positives = 31/115 (26%), Gaps = 10/115 (8%) Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 + + +P N + SM+ GD +I+ Sbjct: 73 EPILAVEEATDYFPLPPNLQFENDSL------FMLTIRGESMINAGIFDGDEVIIRKQST 126 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K L N + +++ + +++ Sbjct: 127 ANNGDIVIAMTVEDEATCKRFYKEED-HYRLEPENDTMSPILL--NELTILGKVI 178 >gi|15675873|ref|NP_270047.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|71904453|ref|YP_281256.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180] gi|94991385|ref|YP_599485.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] gi|13623108|gb|AAK34768.1| putative repressor protein - phage associated [Streptococcus pyogenes M1 GAS] gi|71803548|gb|AAX72901.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180] gi|94544893|gb|ABF34941.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] Length = 255 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 72/259 (27%), Gaps = 58/259 (22%) Query: 2 TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 +++I+ ++ + + N+ + K G+ ++ + P+ ++ K Sbjct: 7 QDLINREIFSTNLNMLMAKKNIKQIDIHNKLGIPKSTITGYVKGRS-----LPTAGNVQK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK--------------------------------EK 88 + + S+ T E+ Sbjct: 62 LADFFGVLKSDIDPRFDSNNIETNSNIIPSTLQKVTSTLSQLEHKRQLNVLDYAETQLEQ 121 Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHK 141 + + + + G T+ +P D Sbjct: 122 QNTVEEPQATYYTYNYYDHAASAGTGQYLNDVQVETIELPVDYDA----------DFVIP 171 Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM P Y GD + + +I ++ GD + GD K L+ + L SLN Sbjct: 172 VYGDSMEPEYHSGDYVFIKLSINLSDGDIGV-FEYYGDAYIKQLVINDSGAF-LHSLNDK 229 Query: 202 YPVDTVEMS-DIEWIARIL 219 Y ++ D I ++ Sbjct: 230 YDDILIDRDSDFRIIGEVI 248 >gi|309379597|emb|CBX21768.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 228 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F + G P +E++ KI +I LL S Sbjct: 18 QAKIASDIEMTIAGFGRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPDE 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134 K+ G + + + I+ Sbjct: 73 APKKSFAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTC 132 Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N + +++ ++ K L G Sbjct: 133 DVKNLSVISVKGDSMEGVLNDGDSILVNHSENTPKDGLYVLRINEN-LLVKRLQIVPGGI 191 Query: 193 IDLMSLNCCYPVDTV----EMSDIEWIARILW 220 I+++S N YP + D+E I R+ W Sbjct: 192 INVISANEAYPAFEINLNHPADDVEIIGRVEW 223 >gi|229844478|ref|ZP_04464618.1| putative prophage repressor [Haemophilus influenzae 6P18H1] gi|229812727|gb|EEP48416.1| putative prophage repressor [Haemophilus influenzae 6P18H1] Length = 221 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 32/229 (13%) Query: 3 SFSHKKIW----EAIDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + +KI +D +R NL G +A + P + +K P+ Sbjct: 1 MITEEKIKQDFAARLDIACKRKNLPEKGRGKVIADILKITPKAVSKWFNAET-----LPT 55 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-N 113 +I+ + T L + +K+ PLL + G + G + Sbjct: 56 QANIYVLADFLGVTKEWLTYGDKNASIEKIEKQISYPLLSPIQA---GLWTDIRSLEGFD 112 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + I S + + SMLP + +GD+++++ I G + Sbjct: 113 GYEMIPSTVIASE---------NSFYLRIERKSMLPRFNEGDLVLIDPDIAPTPGKFVAA 163 Query: 174 KPRTGDIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216 + K R +L+ LN +P + DI I Sbjct: 164 INGNNEATFKQYKELGTRTSEGIPHFELVPLNPMFPTLSSLNQDIRIIG 212 >gi|302670794|ref|YP_003830754.1| LexA repressor [Butyrivibrio proteoclasticus B316] gi|302395267|gb|ADL34172.1| LexA repressor [Butyrivibrio proteoclasticus B316] Length = 205 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 34/220 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++I + I + P+ + + L TS + + G R Sbjct: 9 KQQEILDYIKEQTLQRGFPPAVRDICKAVNLKSTSSVHSHLETLEKNGYIRR-------- 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 T ++ D F+ RT + P + N + + + Sbjct: 61 --DPTKPRAIEICDDGFNMVRTE---------IVSIPVIGQVAAGMPILAEENIDSYIPI 109 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P P K + SM+ GD + + GD+++ Sbjct: 110 PASMCPKG------ADAFILKVKGDSMINAGIYNGDQIFVQQCSTAKNGDQVVALID-DS 162 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V D + + ++ Sbjct: 163 ATVKTFYKEK-GHIRLQPENDTMDPIIV--DDCQILGKVF 199 >gi|325695610|gb|EGD37510.1| transcriptional regulator [Streptococcus sanguinis SK150] Length = 228 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 21/223 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + LT +A K + +++ +R E PSTE + + N Sbjct: 5 EKLKARRKELKLTQKDIADKLRISYQAYSAWERGVKE-----PSTEKVRLLEKLLNVPKG 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHNG 129 ++ T + ++ + + V ++ E+ + Sbjct: 60 YFTEIEIVRLYNTLSPNGKEQVVSYARDLVTEEQNKKVLSIAEPRYEYRVYEEMSAGLGA 119 Query: 130 IYAIQ------------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + D SM P Y G + ++ G + Sbjct: 120 TIYGEKEYDTVYYDEELGHDFASWVSGDSMEPKYPNGSVALIRETGFDYNG-AVYAVVWN 178 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + L+S+N Y D + +I+ Sbjct: 179 EQTYIKRVYLEEDG-LRLVSINKKYKDKFAPYDDDPRIVGKIV 220 >gi|302185922|ref|ZP_07262595.1| peptidase [Pseudomonas syringae pv. syringae 642] Length = 218 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI L +A + G+ ++ + + E+++ + Sbjct: 1 MTRQERIARAIAT----SGLKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121 AT L + L P+ S + G+ V P Sbjct: 53 RATGFRAEWLAIGEGPEKTPAFD---ANVALIDQPNMSFRYPVISWVSAGSWEEAVQPYP 109 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGRLVIAKL 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209 >gi|256019652|ref|ZP_05433517.1| phage reprossor [Shigella sp. D9] gi|332280784|ref|ZP_08393197.1| repressor protein [Shigella sp. D9] gi|332103136|gb|EGJ06482.1| repressor protein [Shigella sp. D9] Length = 234 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 10/214 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF----KILAATN 66 + ++ + ++ + L G+ + + R S ++ Sbjct: 12 KRLNELMTIKGISVTQLKSLVGVTYEMARRYTIGAAKPRVSVMSKLALALGVSASYLEYG 71 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + S T+ I +L S G + + + + + Sbjct: 72 VGDREECKEMASIPNPTKPDVYRIEVLDLSVSAGPGTYMLSDYV--DVLYAIEFTTEHAR 129 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 Q SM P GD L ++ +++ D + K L Sbjct: 130 SLFGNRSQNDIKVMTVNGDSMSPTLVSGDRLFVDISVRHFQTDGVYSFVYGKTFHVKRLQ 189 Query: 187 SRRGRSIDLMSLNCCYPVDTVEM---SDIEWIAR 217 + G + ++S N Y ++ + + + Sbjct: 190 MQ-GNKLAVLSDNPAYEKWYIDEKSQDQLYVMGK 222 >gi|126669228|ref|ZP_01740140.1| probable transcriptional regulator [Marinobacter sp. ELB17] gi|126626309|gb|EAZ96991.1| probable transcriptional regulator [Marinobacter sp. ELB17] Length = 237 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 23/231 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + ++ + L A L + + + + ++ A + + Sbjct: 10 LGQRLKEVRVQRGMSQAKLGALADLTQAAIGALESRDSK------HSSMALQLARALHVS 63 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ E LY + + + +I Sbjct: 64 VDWLVTGEGPKSVPDADGECGDTDLYAGAPLNERDVMLHLLLELPRDLETERTKIVQSGR 123 Query: 129 GIY-----------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 ++ I SM P+ G +++++ + Sbjct: 124 AVFRFAKTILTKADVIPESAVCTSVWGNSMAPVLPDGARVVVDTDDVSVKDGEIYAVNHD 183 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI-----EWIARILWAS 222 G + K L + G ++++S N Y +T + E I R+ W S Sbjct: 184 GMLRVKYLRRKPGGGLEIISQNSAEYAAETYSAEQVASGNIEVIGRVFWWS 234 >gi|226330488|ref|ZP_03806006.1| hypothetical protein PROPEN_04406 [Proteus penneri ATCC 35198] gi|225201283|gb|EEG83637.1| hypothetical protein PROPEN_04406 [Proteus penneri ATCC 35198] Length = 212 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 74/225 (32%), Gaps = 27/225 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I ++ + T + L + G+ + ++ P+ +++ K Sbjct: 1 MKM---DTVGSRIKKLRKTTKTTQNELGKYCGVSGVAVGYWEKDLN-----LPNGDALIK 52 Query: 61 ILAATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + N T + + + + +++P+L + +G + + Sbjct: 53 LAQFFNTTESYILYGISSKENISVITTMRKLPVLSYVQAGKFTEYLATEI---------- 102 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIK 174 E + + SM +P +G +I++ A + G ++ + Sbjct: 103 YDETLEYLETSLKVSPSSFALTVRGDSMTNPSGMPSIPEGAKVIVDPAAEAISGKIVVAR 162 Query: 175 PR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + ++ K LI L LN YP + + E + + Sbjct: 163 LTGSDEVTIKKLIIDGPNKY-LSPLNPRYPNIPINGN-CEIVGVV 205 >gi|289625056|ref|ZP_06458010.1| repressor protein c2, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647376|ref|ZP_06478719.1| repressor protein c2, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|298488759|ref|ZP_07006787.1| Repressor protein c2 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156677|gb|EFH97769.1| Repressor protein c2 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867268|gb|EGH01977.1| repressor protein c2 [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 218 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 21/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI + +A + G+ ++ + + E+++ + Sbjct: 1 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121 AT L + L P+ S + G+ V P Sbjct: 53 RATGFRAEWLAIGEG---PEKDAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 109 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGISVPEGMMILVDTEADVQPGRLVIAKL 169 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209 >gi|238761971|ref|ZP_04622944.1| Prophage repressor protein [Yersinia kristensenii ATCC 33638] gi|238699699|gb|EEP92443.1| Prophage repressor protein [Yersinia kristensenii ATCC 33638] Length = 240 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 72/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + + + ++ +A + G+ ++ N+ + Sbjct: 4 KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNK 114 + K+L + L + + L P S + + GN Sbjct: 62 AAFAKVLNEPISSFSPSLAKELAKMAESLSISHSTKLYDKPTGSIANSYPLISWVSAGNW 121 Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167 + + + +I + SM + +G I++++ + Sbjct: 122 YEAIEPYQLRDIEIWPESTKNAHDNAFWLSVKGDSMTSSSGISFPEGMIILVDPEKEPLP 181 Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + K LI G L LN Y + + + + + ++ Sbjct: 182 GNFVVAKLTDDNEATFKKLIVDAGVKY-LKPLNPAYRLIELNGN-CKILGVVV 232 >gi|71900485|ref|ZP_00682615.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] gi|71729725|gb|EAO31826.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] Length = 252 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 56/235 (23%), Gaps = 29/235 (12%) Query: 13 IDRMAERHNLTPSGLARKAG---LDPTSFNKSKRFGIE-------GRNRWPSTESIFKIL 62 I ++ P +R+ G ++ R L Sbjct: 11 IKQLVAAAG-GPVEFSRRRGAGRWSQAQVSQWISETNPKGIGHKLARAIEAELGLPNAYL 69 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-- 120 T E + + P + + GN Sbjct: 70 DRLPSVDAPHPAGQHIKLDTYEFQAIDDGEELDPEANILVDEVDVMLSAGNGVLIPEFIE 129 Query: 121 -----PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 P + + SM D +++N A ++ Sbjct: 130 TKFRMPFPLPWLRHAHINPKDVKLMRVHGDSMERTLFDNDRVMVNFADTRIRDGKVYAIA 189 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD---IEWIARIL 219 G+ K L + R + ++S N Y + V ++ ++ + R++ Sbjct: 190 IGGEAKVKRLYTLRNNGLRIVSDNQNKDSEGHRIYKDEIVPPNEMETVQVLGRVI 244 >gi|323342770|ref|ZP_08083002.1| LexA repressor [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463882|gb|EFY09076.1| LexA repressor [Erysipelothrix rhusiopathiae ATCC 19414] Length = 195 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 60/210 (28%), Gaps = 36/210 (17%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 RH L+ + G+ ++ ++ + + S E ++ + Sbjct: 10 FRARHELSLEEVGDAVGVSKSTVSRWEAGI----IKKISLEKQERLSDLFKINVPDYWVY 65 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 +F P + + V + + Sbjct: 66 H-----------------FFKPVLGVVRAGYDLLAHQDIIAYEEVSKREYDQGDYF---- 104 Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 K SM +GD++ + + GD ++ + ++ K +I + + Sbjct: 105 ----LKVVGDSMTGSRIYEGDLIFIKKTQDIVSGDIAVVLIQGDEVTVKRVI-LKDDLMI 159 Query: 195 LMSLNCCYPVDTVEMSD-----IEWIARIL 219 L + N YP + +E I ++L Sbjct: 160 LEATNPDYPTQYYNAEEVLMLPVEVIGKVL 189 >gi|149196525|ref|ZP_01873579.1| LexA repressor [Lentisphaera araneosa HTCC2155] gi|149140205|gb|EDM28604.1| LexA repressor [Lentisphaera araneosa HTCC2155] Length = 207 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 61/225 (27%), Gaps = 30/225 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M + ++ + I+ R + P+ +A + + TSF + +G S Sbjct: 1 MKGLTDRQQETLDFIEDFTAREGMAPTIYEIAERFNIKSATSFAHVRALQRKGYLTRSS- 59 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 T + + + + P + N Sbjct: 60 ------------------KARSMTVTNTTTRPRNLSFMLSIPMLGRISAGMPLMAEENVE 101 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + SM GD +I+ N GD ++ Sbjct: 102 REIQIDPASFQGLRA---DGRLFALLVNGESMRDAGILDGDSIIVKQQDNANAGDIVV-A 157 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD K L I+L N + E +++ +++ Sbjct: 158 MVHGDTTVKQLFF-TNGKIELRPCNDEFQTQFYEPAEVYIQGKVV 201 >gi|44888098|sp|Q7W0T5|LEXA_BORPA RecName: Full=LexA repressor Length = 216 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 24/215 (11%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 T + ++I + I + R P + +A+ G R P+ Sbjct: 3 TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 45 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 A I L P G G+ Sbjct: 46 DHLKALARKGAIELTAGASRGIRLKVPDNAAPSAQLTHPLLAQLVLPLVGRVAAGSPILA 105 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 E + QT D K + SM +GD+L + A + G ++ + Sbjct: 106 SEHVEREVGVDPGLFTQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-L 164 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + I+L+ N + V +D Sbjct: 165 GDEVTVKRLQRQ-NGRIELLPENPDFSPIVVANTD 198 >gi|70729331|ref|YP_259068.1| LexA repressor [Pseudomonas fluorescens Pf-5] gi|68343630|gb|AAY91236.1| LexA repressor [Pseudomonas fluorescens Pf-5] Length = 201 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 59/216 (27%), Gaps = 35/216 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R E + P + +A++ G + E Sbjct: 1 MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSP---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + T + I + F G G Sbjct: 46 HLKALARK-------------GAIEMTPGASRGIRIPGFEAKADDTLPIIGRVAAGAPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 93 AQQHIEESCNINPTFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQVVVARI 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V + D Sbjct: 153 -GDEVTVKRFKR-EGSKVWLIAENPEFAPIEVNLKD 186 >gi|299067356|emb|CBJ38555.1| transcriptional lexA repressor [Ralstonia solanacearum CMR15] Length = 216 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 23/216 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I + +R P + +A + G + + E Sbjct: 1 MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA R L G G+ Sbjct: 45 EHLRALARKGVIELTPGASRGIRLRAEGGASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + D K + SM GD+L + A + G ++ + Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRAAEAANGKIVVAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + GR ++L++ N + V++ Sbjct: 164 LGDDVTVKRFQRK-GRQVELLAENPDFEPIHVDLDR 198 >gi|113868257|ref|YP_726746.1| LexA repressor [Ralstonia eutropha H16] gi|123133872|sp|Q0K9E3|LEXA_RALEH RecName: Full=LexA repressor gi|113527033|emb|CAJ93378.1| SOS-response transcriptional repressor LexA [Ralstonia eutropha H16] Length = 217 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 21/216 (9%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I R P + +A + G E R + + Sbjct: 1 MATLTPRQQQIFDLIRNTIRRTGFPPTRAEIAAEFGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ + I + S+ L G G+ Sbjct: 54 GVIELTPGASRGIRLKVAHSDSEMPDQFS-------LPMAGVMQLTLPLVGRVAAGSPIL 106 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + D + + SM GD+L + A + G ++ + Sbjct: 107 AAEHIDRQYQVDASVFDERPDYLLRVRGLSMRDAGILDGDLLAVRRASEAANGKIVVAR- 165 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K L R G I+L++ N + VE + Sbjct: 166 LGDDVTVKRLQRR-GGHIELIAENPDFTNIIVEPGE 200 >gi|322419141|ref|YP_004198364.1| LexA family transcriptional repressor [Geobacter sp. M18] gi|320125528|gb|ADW13088.1| transcriptional repressor, LexA family [Geobacter sp. M18] Length = 201 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 5/112 (4%) Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 G + E + + + + SM+ ++GD+ ++ N + Sbjct: 85 AGALHPAIEDIEGHFTIDRSQLEKGGAFFLRVKGDSMIHAHIQEGDLALVRPQPHANNKE 144 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219 ++ G+ K I L N Y V+ D + I +++ Sbjct: 145 IVV-AMVGGEATLKRFYR-EADRIRLQPENPNYDPIIVQEGDGEVSIIGKVV 194 >gi|300087541|ref|YP_003758063.1| LexA family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527274|gb|ADJ25742.1| transcriptional repressor, LexA family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 210 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 28/225 (12%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S K+ + + + R E H PS +A GL + +E + Sbjct: 1 MSALSEKQRKVLDYLRRFMESHGYAPSVRDIADGCGLKSAPVAQYYLDVLEKK------G 54 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I ++ + L + P + + + + Sbjct: 55 FIARMKGVSRSITLPLRAGGSLKAVPLLGIIAAGVPIALPENDTWNLTPEEMVEVSD--- 111 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY-RKGDILILNSAIQVNCGDRL-LIK 174 I +T K + TSM+ GD ++L G + + Sbjct: 112 ------------DILRGRTNVFALKVRGTSMIDALVDDGDTVLLTQTGTAEDGAMVAVWL 159 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K + G I L N + ++E R++ Sbjct: 160 QDRNEVTLKKIYR-EGNRIRLQPANRYMEPIFCDPGNVEIQGRVI 203 >gi|150021069|ref|YP_001306423.1| SOS-response transcriptional repressor, LexA [Thermosipho melanesiensis BI429] gi|166224653|sp|A6LM87|LEXA_THEM4 RecName: Full=LexA repressor gi|149793590|gb|ABR31038.1| SOS-response transcriptional repressor, LexA [Thermosipho melanesiensis BI429] Length = 199 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 59/223 (26%), Gaps = 35/223 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + K+ + + I +++ + PS I Sbjct: 1 MKKLTEKQQKVLDFIKNYIQQNGYS-----------------------------PSIRDI 31 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K T + G T + + S G G Sbjct: 32 AKHFKLTPRGAHIHVIALEKKGYITRNPKNSRSISLVKRQESILIPVKGKISAGMGIEMF 91 Query: 119 GVPEIRSPHN-GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + + + + K + SM+ GD +IL ++ G + Sbjct: 92 EIVDEEIEIPVRMISGFGNYFALKVEGNSMIDAHIINGDYVILKKQYRIPNGQIAAVVFD 151 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ ++L+ N + DI+ I +++ Sbjct: 152 -NKVTLKRFYHKKD-KVELVPENKDMNPIVCDAKDIKVIGKLV 192 >gi|153581899|emb|CAM34257.1| phage repressor protein [Streptococcus pyogenes] gi|262113712|emb|CAR95379.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 229 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 23/223 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + S +A K G++ S+NK + + + ++ IL Sbjct: 6 RLKEKRIERKFNQSEIAYKLGINRASYNKWESGKSVPNQK--NLTALATILDVPVTYFES 63 Query: 72 LLDLPFSDGRTTEKKEKEIPLL-----------YFPPSGSGGFFDSGVFPTGNKW---NT 117 ++ + + + + + P S G + Sbjct: 64 EYNIVNNYLQLSPDNQVKAEEYVEELLLSQQTSNVTPLFSVQVLSDIQLSAGLGEGFFDE 123 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + S D + SM P+Y+ G++ ++ S G + Sbjct: 124 FETETVYSNEEQY----GYDIAAWIEGDSMEPIYKNGEVALIRSNGFDYDG-AVYALSWK 178 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + K L ++SLN YP + D + ++ Sbjct: 179 DSVYIKKLYRDEDG-FRMVSLNKDYPEKFIPYEDDPRIVGLVV 220 >gi|240850636|ref|YP_002972036.1| SOS response regulator LexA [Bartonella grahamii as4aup] gi|240267759|gb|ACS51347.1| SOS response regulator LexA [Bartonella grahamii as4aup] Length = 237 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 62/230 (26%), Gaps = 14/230 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-R 51 M + ++ I + + PS L+ K+G+ +R I R Sbjct: 1 MLTCKQYELLLFIHNHTKETGVPPSFEEMKNALELSSKSGIHKLIIALEQRGFIRRLPNR 60 Query: 52 WPSTESIF---KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + E I KI + + + R K + + G Sbjct: 61 ARAVEVIRLPEKITFNLSLARKISPSMIEKNKREISKNLSNLDNFDEEEKKNITIPIMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 + + + + +D SM D +I+ Sbjct: 121 ISASVPASAILQQINTLSLPRNMVNTGEHYALEVKDDSMMEAGILDKDTIIVKRQNTAIT 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G+ ++ + K + SI L + N Y T E +E + Sbjct: 181 GEIIVAFIDKKEATLKRYRRKGA-SIALEAANPHYEARTYESERVEIQGK 229 >gi|78186881|ref|YP_374924.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166783|gb|ABB23881.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 245 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 36/241 (14%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--------------EGRNRWP- 53 + E I + + T K G+ ++ + R++W Sbjct: 7 LGERIRAVRRHYRETQEEFGEKIGISGNRVSELENGKGGTGAGVVQALCAAFSVRHQWVL 66 Query: 54 --STESIFKILAATNETICQLL------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 E + K + +E + G T +E+ Sbjct: 67 SGKGEMLEKAEKSRDENDLSHRLLLLEERVGRIMGTATTDREETGEDEAVVQVPLYSSAV 126 Query: 106 SGVFPTGNKWN---TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161 P +V P + + SM+ + GD L++ + Sbjct: 127 PAGMPAAAADEVECSVDFPRSWTKG------KKNIYALTVSGDSMMDIGIMPGDTLLVEA 180 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARILW 220 G ++I ++ K L G ++ L N Y V D + ++ Sbjct: 181 RETARDGQ-VVIASLNSEVTVKTLCISAGGAVALAPENRKYHPIPVPPDSDFRIMG-VVL 238 Query: 221 A 221 A Sbjct: 239 A 239 >gi|325263951|ref|ZP_08130684.1| repressor LexA [Clostridium sp. D5] gi|324030989|gb|EGB92271.1| repressor LexA [Clostridium sp. D5] Length = 204 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 55/221 (24%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 +I E I P+ + L TS + + G R P+ Sbjct: 9 KQLEILEYIKSQILERGFPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL T + P + N N Sbjct: 69 EILDDTFN--------------------LTRREVVNVPLVGRVAAGEPLLAQENIENYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + Q + SM+ GD++++ + GD ++ Sbjct: 109 IPME-------FMPNKQTFMLTVKGESMINAGILDGDMVLVEQEHTASNGDMVVAL-VED 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V+ ++ + +++ Sbjct: 161 GATVKTFYKEE-GVYRLQPENDYMEPIIVK--EVSILGKVI 198 >gi|167034662|ref|YP_001669893.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166861150|gb|ABY99557.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 217 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 15/215 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + R HNL+ LA + G+ R R P+ E+I + L Sbjct: 6 AFLKRYKREHNLSQLKLAERLGMTQGGVGHWLRGT-----RRPTVETINEKLEKLGLVFL 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIR-SPHN 128 + + E + + P SG + S FP + +PE S Sbjct: 61 EAQVMVVERNIVREAPGRYA--VEQPVSGEALLYASFRFPVLAWSDLQGPLPETAKSNEQ 118 Query: 129 GIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y ++ SM +G +++++ + V G ++ + V + Sbjct: 119 TDYMPAGNAFWLLVENDSMNAASGKSVPEGMRVLVDTGLPVEPGRLVIARQPGRPAVLRQ 178 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L+ G L LN YP E E+I ++ Sbjct: 179 LVEEGGDK-MLKPLNTRYPTILCEEG-CEFIGVVV 211 >gi|225021233|ref|ZP_03710425.1| hypothetical protein CORMATOL_01245 [Corynebacterium matruchotii ATCC 33806] gi|305681098|ref|ZP_07403905.1| repressor LexA [Corynebacterium matruchotii ATCC 14266] gi|224945966|gb|EEG27175.1| hypothetical protein CORMATOL_01245 [Corynebacterium matruchotii ATCC 33806] gi|305659303|gb|EFM48803.1| repressor LexA [Corynebacterium matruchotii ATCC 14266] Length = 244 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 61/217 (28%), Gaps = 6/217 (2%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I + I PS + AGL TS + +E + + + + Sbjct: 25 QRRILQVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELERKGFLRRDPNKPRAVD 84 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 +L + + + G GN + Sbjct: 85 VRAIPGEELKKTATAGKGRKAPTATVTGQSTVEAANTSYVPLVGSIAAGNPILAEQNISL 144 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P + + SM GD ++L S V+ GD + G+ Sbjct: 145 YYPLPQEIVGDGELFMLQVVGESMRDAGIFDGDWVVLRSQKVVDKGDFVAAMID-GEATV 203 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L+ N + V + E I +++ Sbjct: 204 KEFH-QDQSGMWLLPHNDSFDPIAVSP-ETEIIGKVV 238 >gi|294670301|ref|ZP_06735185.1| hypothetical protein NEIELOOT_02021 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307957|gb|EFE49200.1| hypothetical protein NEIELOOT_02021 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 251 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 45/236 (19%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 P+ +AR + + ++ P E++ I L+ Sbjct: 17 PAQIARDLNWSISGVLRIFE-----KDTIPKAETLVSIQKLKGCDWKWLMTGEGVPFPKG 71 Query: 84 EKKEKEIPLLYFPPSGS----------------------------GGFFDSGVFPTGNKW 115 L + + G+ + Sbjct: 72 AATGSNQELQEPVAGYNAKWNAKSIQTAPEVRDTLGNPVDLSEFVFIPRYNVKVAAGHGY 131 Query: 116 NTVGVPEIRSPHNGIYAI-------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + Y I + K SM + GD ++++ + G Sbjct: 132 AVEDEKPKFTMAFRRYWIRVHLRTDPKSLSVVKVAGDSMEGILFDGDNVLVDHSRN-QPG 190 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILW 220 + L + +++ K + G + + S N Y ++++D +E I +++W Sbjct: 191 NGLYVLRIGEELIVKRTQTLPGNHLLVSSANEAYQPFELDLADETSGVEIIGKVVW 246 >gi|325266458|ref|ZP_08133135.1| LexA family repressor/S24 family protease [Kingella denitrificans ATCC 33394] gi|324981901|gb|EGC17536.1| LexA family repressor/S24 family protease [Kingella denitrificans ATCC 33394] Length = 217 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 21/221 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 ++ I + I +M + +LT + LA+K G+ + ++ + + P+ ++++ + Sbjct: 2 NETIGQRIKQMRKERHLTQNDLAKKIQGVSHAAISQWEADLTK-----PNADNLYDLSLV 56 Query: 65 TNETICQLLDLPFSDGRTTE--KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 N LL + E K + Y + +K + Sbjct: 57 FNCDFAWLLRGGSGNVTQHELLDISKIPVVSYDYLKEILENSNDTRIINSDKDEYIMSEI 116 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + D SM P + D+++ + + G+ ++ K Sbjct: 117 KYM---------GRVIALRVTDDSMKPDFMPDDMVVFDLNLAPAPGEFVVAKIDNRFFFR 167 Query: 183 KV----LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L + S L+ LN Y + +I+ + ++ Sbjct: 168 KFKANELAAENSGSFSLVPLNDDYAPLSSNQYNIQIVGTLV 208 >gi|149912077|ref|ZP_01900667.1| putative transcriptional regulator [Moritella sp. PE36] gi|149804843|gb|EDM64881.1| putative transcriptional regulator [Moritella sp. PE36] Length = 138 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 7/112 (6%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 T+ + I SM P + G ++++N + D + + Sbjct: 27 TISFEPHWLRNE-IGVYPNNVFLMLVDGDSMQPTLKNGSMIMVNRDVDNLS-DGVYVMRH 84 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-----EMSDIEWIARILWASQ 223 +++ K L G I + S N Y + + ++ I R++W Q Sbjct: 85 DNNLLVKRLQMLPGGIIRVKSDNTMYDPWEITKSQLDGEELALIGRVVWTGQ 136 >gi|322412563|gb|EFY03471.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 248 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 66/232 (28%), Gaps = 39/232 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + N++ LA+K G+ T+ + ++ I TE + KI N Sbjct: 2 DIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVP----TEVLEKISKILNT 57 Query: 68 TICQLLDLPFSDGR------------------TTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + + ++K +F Sbjct: 58 NPAYFMGWSDTPTPVQTQTLQEIIVTSKQLEQPRQEKVLSFANEQLEEQSKVVSMHEELF 117 Query: 110 PT------------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 G + + D + SMLP Y +GD+L Sbjct: 118 SVQGVTYAAAASGFGRGFEADDYDTYTVYTDEE--PPRYDYAIGVRGDSMLPKYEQGDML 175 Query: 158 -ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 I++ + G ++ G K + + + L+SLN Y ++ Sbjct: 176 YIVDRGMSTYNGQLCIVVHN-GQTYFKKVYTEEDG-LRLVSLNKKYNDIFID 225 >gi|324993435|gb|EGC25355.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|325694151|gb|EGD36069.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|327461709|gb|EGF08040.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] gi|327489562|gb|EGF21355.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 225 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 59/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NL + + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLAQASIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSTLYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|170720993|ref|YP_001748681.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169758996|gb|ACA72312.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 235 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 71/218 (32%), Gaps = 16/218 (7%) Query: 10 WEAIDR-MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 W A+ R E +++ LA + G+ S + R P ES+ ++ Sbjct: 20 WIALVRDRMEELDISQEQLAERVGVSQGSVGHWVN-----KRRQPKVESMNRVFVELGMP 74 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125 + G+ E + + + +P W+ + + Sbjct: 75 HYHVSMQLRVLGQVGEDSGRYVLDEEDDDVDLMQYIVCFRYPV-RGWDALADSAHEQGTV 133 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 Y Q + ++ +M +G ++++ ++ G ++ + + Sbjct: 134 FEQTEYLAQGKAFWLTVENDAMSTASGRSVPQGMRILVDPGLEAEPGRLVIARQPGKSAI 193 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L G+ L +LN YP E E++ ++ Sbjct: 194 LRELAEEGGQRY-LKALNSSYPALVCE-DGCEFLGVVV 229 >gi|19746131|ref|NP_607267.1| repressor protein [Streptococcus pyogenes MGAS8232] gi|19748307|gb|AAL97766.1| putative repressor protein [Streptococcus pyogenes MGAS8232] Length = 232 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 15/223 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + +T S L R ++ + + ++ + + + + Sbjct: 4 GHQLKTARLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDCFDP 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L P++ + K++ + + + + Sbjct: 64 NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 Y D SM P Y G+++++ G + Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224 >gi|257459294|ref|ZP_05624408.1| putative transcriptional regulator [Campylobacter gracilis RM3268] gi|257443307|gb|EEV18436.1| putative transcriptional regulator [Campylobacter gracilis RM3268] Length = 259 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 65/239 (27%), Gaps = 29/239 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK-------RFGIEGRNRWPSTESIFK 60 I + I + LT A K G+ + + G E ++ P E + Sbjct: 2 DIHQKIRAFRQEAGLTQVQFAEKLGITQGLVAHYETQPGEIGKNGKEKKSSKPELEKLPL 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP--SGSGGFFDSGVFP-----TGN 113 I + + L D + R KKE + + G + G Sbjct: 62 IAEILGKNVIDLFDDEETSKRQIVKKELKNNFEKYAHLIPAEYGLKNVVFLSKSDMLIGA 121 Query: 114 KWN--------TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN----S 161 + SM P Y +GD+ I++ Sbjct: 122 GSEGAYDLDLFNKETKIAVDRSFIKGLDPKNLKLFEVVGDSMQPEYDEGDLAIVDMVNFR 181 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIARI 218 + G + + K + +I L+SLN Y + E + ++ Sbjct: 182 GDFIKIGGI-YVVRVGDVVYVKRVEFLPKGAIKLISLNSKYGDLYPHKEGYEYEILGKV 239 >gi|6249458|emb|CAB60047.1| hypothetical protein [Legionella pneumophila] Length = 244 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 15/225 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +KI I + LT LA L+ + N +R R P E I ++ Sbjct: 19 MSIKEKIGLRIKQERMSKKLTMKALAELTDNLNISRINNYERGE-----RTPGPEEIKQL 73 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGV 120 A + L+ L + + L + + + + Sbjct: 74 ARALEVSPSFLMCLSDDRQGSFKTPGLGGLLPILDYKSACYPALVIQRIKEESYSEKLDL 133 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-D 179 I S I +D SM P ++ DILI++ Q N GD ++ + + Sbjct: 134 IPISSTVQKR--IGKNAFALAVKDESMAPEFKFDDILIVDPDTQPNPGDYIVARLENEPE 191 Query: 180 IVAKVL----ISRRGRSIDLMSLNCCYPVDTVEMSDIEW-IARIL 219 I+ + +S+ +L+++N +P + E I ++ Sbjct: 192 IIIRKFKQLSVSKEKPEFELVAINNDWPDVKISKELNEIFIGSVI 236 >gi|225378074|ref|ZP_03755295.1| hypothetical protein ROSEINA2194_03734 [Roseburia inulinivorans DSM 16841] gi|225210075|gb|EEG92429.1| hypothetical protein ROSEINA2194_03734 [Roseburia inulinivorans DSM 16841] Length = 203 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 53/221 (23%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 K+I E I P+ + L TS + + G R P+ Sbjct: 8 KQKEILEYIKGEILSKGYPPAVREICEAVDLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + P + T N N Sbjct: 68 EILDDDFN--------------------LTRREVVNVPIVGHVAAGEPILATENIENYFP 107 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P Y + K + SM+ GD +++ GD ++ Sbjct: 108 IPVE-------YMPNEETFMLKVKGESMINAGIFNGDNVLVKKQPNAENGDIVVALVD-D 159 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V+ + + ++ Sbjct: 160 SATVKTFYK-EDGYYRLQPENDTMDPIIVK--ECSILGKVF 197 >gi|238027471|ref|YP_002911702.1| LexA repressor [Burkholderia glumae BGR1] gi|237876665|gb|ACR28998.1| LexA repressor [Burkholderia glumae BGR1] Length = 235 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + +++++ + R ER P + +A + G E R + + Sbjct: 21 MTKLTARQQQVFDLVRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 73 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A + L G G+ Sbjct: 74 GVIELAAG----------ASRGIRLLGLDEAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 123 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + D K + SM GD+L + + G ++ + Sbjct: 124 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRSEAKDGQIIVAR- 182 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L I+L++ N Y V+ Sbjct: 183 LGDDVTVKRLKRHSTG-IELIAENPDYENIFVKA 215 >gi|225575216|ref|ZP_03783826.1| hypothetical protein RUMHYD_03305 [Blautia hydrogenotrophica DSM 10507] gi|225037509|gb|EEG47755.1| hypothetical protein RUMHYD_03305 [Blautia hydrogenotrophica DSM 10507] Length = 227 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 70/225 (31%), Gaps = 26/225 (11%) Query: 6 HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K+I+ ++ + N + +A+ G PT+FN + + +++ Sbjct: 18 QKRIFAKNLNFYISKSNKQQNEVAKDLGFPPTTFNTWC--VGKVMPKMGKVQALADYFGV 75 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + S + L + F E Sbjct: 76 LKSDLLEDKNKDDSLHISNIFPITTHKLPMLGEIACGKPIFMD---------------EN 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 R + I + D K + SM+ GDI+ + S +V G+ + + Sbjct: 121 RDNYTMIGSNVKADFCLKAKGDSMVNARIMDGDIVFIRSQPEVENGEIAAVAID-DEATL 179 Query: 183 KVLISRR-GRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223 K +++ L+S N Y ++ + + + A Q Sbjct: 180 KRFYRDEITQTVTLISENPIYAPMVFTKECQKNVYILGKAV-AFQ 223 >gi|94990537|ref|YP_598637.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] gi|94544045|gb|ABF34093.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] Length = 232 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 15/223 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + +T S L R ++ + + ++ + + + + Sbjct: 4 GHQLKTARLSRGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L P++ + K++ + + + + Sbjct: 64 NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 Y D SM P Y G+++++ G + Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224 >gi|289623593|ref|ZP_06456547.1| peptidase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650802|ref|ZP_06482145.1| peptidase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868513|gb|EGH03222.1| peptidase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 203 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ +A + G+ P + R P E I + L I Sbjct: 1 METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134 G + + Y P S P S I Y + Sbjct: 56 SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109 Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189 + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 169 AGRYFLKPLNPTYPTLAVT-EECKLIGVI 196 >gi|317405687|gb|EFV85983.1| hypothetical protein HMPREF0005_01272 [Achromobacter xylosoxidans C54] Length = 231 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 55/231 (23%), Gaps = 20/231 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I LT L + G+ + + R + L T E Sbjct: 3 LGKQIRHYRAALGLTLEQLEARTGVGVGTIAALE---GRDSERSKYASRLAAGLGLTLEQ 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------- 121 + D + G P Sbjct: 60 LLDESAQYPPDVVLADTGGASRADDG-AGGDLRIPRFDTGGAMGAGVELRDQPGVIQSLR 118 Query: 122 ---EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 E + Y SM P+Y GD L+++ + D + Sbjct: 119 VSQEWLHKNLRHYTAAANLCVVTGFGDSMRPMYNPGDPLLVDLGVVKADVDGVFFFRVGN 178 Query: 179 DIVAKVLISRRGRS---IDLMSLNCCYPVDTVEMS-DIEWIARI--LWASQ 223 + K L I S N Y + D++ R+ +W S+ Sbjct: 179 EGFIKRLQRIPSARGLLIRAKSENTKYDAWDITEDMDLQIFGRVLKVWRSE 229 >gi|300856826|ref|YP_003781810.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436941|gb|ADK16708.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 314 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 29/248 (11%), Positives = 69/248 (27%), Gaps = 43/248 (17%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK-ILAAT 65 + I I E +T L+ G++ K + P ++ + K I Sbjct: 67 ENIGYIIKEEREYQGITQKELSDAVGINENELAKYENNEA------PISQFLAKKIANFF 120 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----GNKWNTV-- 118 + + L+ G + + + +S P + + T+ Sbjct: 121 DMSFPAFLNKYGLYGDIPSQFNGDADWYESFKKAAYYDANSNTTPNKVAESSDIYETINK 180 Query: 119 -----------------------GVPEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKG 154 P + K + SM +++G Sbjct: 181 DMSNVINIPIVGVVRAGKPILAQDNISGYLPTLKQFIDNDKDYFYLKVKGDSMNQEFKEG 240 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPV--DTVEMS 210 +L++ + G ++ + K ++ I L+ + N Y ++ Sbjct: 241 SLLLIEKTPCIENGQIGVVLIDGMEATVKKIVKNEN-MITLIPMSNNPEYVPKMYDIKKD 299 Query: 211 DIEWIARI 218 +I+ I + Sbjct: 300 EIQIIGVV 307 Score = 39.4 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I + + +T LA+ GL +S + + S E++ K+ Sbjct: 2 LGDKIKDLRKLKKITQQKLAKSIGLSQSSIGMIESN-----KQGASNETLVKLAKLF 53 >gi|325127686|gb|EGC50599.1| putative transcriptional regulator [Neisseria meningitidis N1568] Length = 202 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 18/199 (9%) Query: 37 SFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP----L 92 + R EG P +E++ KI +I LL + K+ Sbjct: 2 TIAGFSRIWNEGGL--PKSETLKKIKQLKGCSIDWLLTGEGNPFPDEAPKKSLAYDTLGN 59 Query: 93 LYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDT 145 G + + + + Sbjct: 60 EVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGD 119 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 SM + GD +++N D L + +++ K L G I+++S N YP Sbjct: 120 SMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAF 178 Query: 206 TVEM----SDIEWIARILW 220 + + D+E I R+ W Sbjct: 179 EINLNDLTDDVEIIGRVEW 197 >gi|152979060|ref|YP_001344689.1| putative phage repressor [Actinobacillus succinogenes 130Z] gi|150840783|gb|ABR74754.1| putative phage repressor [Actinobacillus succinogenes 130Z] Length = 243 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 72/222 (32%), Gaps = 32/222 (14%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 PS +R+ G+ ++ + ++ + PS ++ KI A N + L S T Sbjct: 21 PSEFSRQTGVTLSTITRWRKGEAD-----PSRTNLIKIAEAANVNLEWLATGKGSADNTA 75 Query: 84 EKKEKEIPL---------------LYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEIRS 125 E+ + + + V G + + Sbjct: 76 TLDERTDGVGEITAYNSRSVARYEEFVNQFEFIPMHNDIVVSAGAGGYNEEEYDPNNVLA 135 Query: 126 PHNGIYAIQT----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM P + D+L+++ + + ++ + G ++ Sbjct: 136 FRKDWLQSKGVKAKNCEVYFATGDSMYPTIQDKDLLLIDHSRNILQDGKVFVINNGGRLL 195 Query: 182 AKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE---WIARIL 219 K + + S+ L+S N Y V ++++ + ++ Sbjct: 196 VKRVQLQF-GSVKLISDNASLYEPVIVPEAELDALIVLGEVM 236 >gi|300858650|ref|YP_003783633.1| SOS response regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686104|gb|ADK29026.1| SOS response regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302206357|gb|ADL10699.1| LexA repressor [Corynebacterium pseudotuberculosis C231] gi|302330913|gb|ADL21107.1| LexA repressor [Corynebacterium pseudotuberculosis 1002] gi|308276599|gb|ADO26498.1| LexA repressor [Corynebacterium pseudotuberculosis I19] Length = 235 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 16/219 (7%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 ++I E I PS + AGL TS + K +G R + Sbjct: 22 QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGYLRRDPNKPRAVD 81 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + E+ + E F P S + N +P Sbjct: 82 VRTLPESSASKPGRKQNLKAKKSPVPSETSPTSFIPIVGSIAAGSPILAEENVNAYYPLP 141 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + SM GD +++ + G+ + G+ Sbjct: 142 QDIVG-------DGELYMLEVVGESMRDAGILNGDWVVVRAQPVAEQGEFVAALID-GEA 193 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N + + + +++ Sbjct: 194 TVKEFHKDASG-VWLLPHNDAFSPI--PGDQADIMGKVV 229 >gi|221199496|ref|ZP_03572540.1| prophage transcriptional regulator [Burkholderia multivorans CGD2M] gi|221180781|gb|EEE13184.1| prophage transcriptional regulator [Burkholderia multivorans CGD2M] Length = 255 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 70/256 (27%), Gaps = 43/256 (16%) Query: 2 TSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNK---SKRFGIEGRNRWPSTES 57 + +I + + R+ E N+T + LAR+ + P + KR + R Sbjct: 5 AMKTIAQIRLDNVLRLVENRNMTKADLARRIAISPQQVYQLLSYKRNIGDKLARRIE--- 61 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 L + + + + P + + P Sbjct: 62 -SAFDKEPGWLDQDHPYLTTATLPESSLSPEASNIRQLPARPVLAWDNEDELP---HDEY 117 Query: 118 VGVPEIRS-------------------------PHNGIYAIQTQDTRHKTQDTSMLPLYR 152 V VP + + SM P Sbjct: 118 VLVPRLAVKASAGNGKLVWQVDEKGQRQAFRKAWLERLGMKPEYAATIVADGMSMAPRIE 177 Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEM 209 GD L++N ++ + ++ K L ++ ++S N YP + Sbjct: 178 DGDSLVVNYKEHTIASGKVYVFTFAYELFIKRLYRGTD-AVRVVSDNPDKSRYPDWQIPA 236 Query: 210 S---DIEWIARILWAS 222 D+ IAR++ S Sbjct: 237 ERLNDLTVIARVVAVS 252 >gi|298486716|ref|ZP_07004773.1| Repressor protein c2 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158799|gb|EFH99862.1| Repressor protein c2 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 362 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 25/235 (10%) Query: 2 TSFSHKKIWEA----IDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWP 53 + + A + + +++ P G L++ G+ P + +K P Sbjct: 131 PMVQIEDLRAAFAVRLKKALAENHIEPWGAGVRLSKMTGVTPKAASKWLNGEA-----MP 185 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP--SGSGGFFDSGVFPT 111 + + N + L + T+ + + + Sbjct: 186 GPAKMRSLSEELNVPLAWLQNGVDDTSMTSRSVASAPSNVAMVEQPAVMYRYPVVSTVAA 245 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167 G V Y + + + SM +G +++++ ++ Sbjct: 246 GAWMEAVESSFSDRYETTDYKAKGRAFWLEVAGDSMTAPTGVSVPEGMLILVDPGVEARP 305 Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218 G ++ P + + K LI + L LN Y + D + I R+ Sbjct: 306 GKLVVAKLPSSNEATFKKLI-DDAGQLYLKPLNPGYAMIKCT-DDCKIIGVAVRV 358 >gi|254457839|ref|ZP_05071266.1| putative phage repressor [Campylobacterales bacterium GD 1] gi|207085232|gb|EDZ62517.1| putative phage repressor [Campylobacterales bacterium GD 1] Length = 219 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 9/195 (4%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 +A G+ +F K+ RN+ P E + A + L Sbjct: 27 KDVADVLGISQMNFATMKK-----RNKVPFGELMDFCAARSISINWMLYGQSPESLVEAT 81 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + + + +GG D + + + + Sbjct: 82 NRFYMVKYFSNVNASAGGGADEQCEELEDLELPEQFVYMLGGESEM----KNIEAINVSG 137 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P + DI+ +N A + + K + R ID++S N Y Sbjct: 138 DSMEPTFSYNDIVFINRAKTDLQRGGIFTIRTEAGLFIKRVQKRIDGKIDIISDNQVYST 197 Query: 205 DTVEMSDIEWIARIL 219 T+E+++IE I R++ Sbjct: 198 QTLELNEIEVIGRVV 212 >gi|160897066|ref|YP_001562648.1| putative phage repressor [Delftia acidovorans SPH-1] gi|160362650|gb|ABX34263.1| putative phage repressor [Delftia acidovorans SPH-1] Length = 237 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 64/226 (28%), Gaps = 16/226 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 H++ +A+ + +RH + R+ G+ T+ + R S ++ Sbjct: 14 HRQEAQALREIWDRHKPNQAEFGREFGIGGQTAVSNFLRGKS-----ALSMKAATGFATG 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK------WNTV 118 I + + + + P F G+ + Sbjct: 69 LGCDIGEFSPRL-AREASHIAEVVAASDPSNPSEFVPVRRVDVRFSNGHGKVIYTEDDHP 127 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + R N + + + S P G +++N + G Sbjct: 128 PLVFRRDFLNSVGIRNGDAVVVEAEGVSNEPKIMDGSAVLVNRGDRERLAGDFFAFRVDG 187 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPV---DTVEMSDIEWIARILWA 221 +++ K L G I + N + + D E I R +W Sbjct: 188 ELMIKRLERIDGVGILATAENSSFRPKSRIYTKAEDFEIIGRAVWV 233 >gi|163754523|ref|ZP_02161645.1| transcriptional regulator [Kordia algicida OT-1] gi|161325464|gb|EDP96791.1| transcriptional regulator [Kordia algicida OT-1] Length = 267 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 22/231 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG----RNRWPSTESIFKI 61 H+KI + ID L + +++ G+ T+ + + + P + + I Sbjct: 5 HEKIKQIIDHFR----LNNNSFSKRIGVTSTTIDSITNGRPQPDGSRKRTKPGYDLLTSI 60 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTG------NK 114 + + L + + +K+ + + G + P + Sbjct: 61 IKEFDINPEYLFGISSQMFKADKKEFQTYAGIPQVVAVNQEGEENVVYVPVKARAGYLDG 120 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL 171 + E + + + Q SM+ + GD++ + V G Sbjct: 121 YGDADYIETLPSFSMPHLTNGTYRCFEVQGNSMVRTFFDGDLVFGKYVEDLNDVKDGRVY 180 Query: 172 LIKPRTGDIVAKVL--ISRRGRSIDLMSLNCC--YPVDTVEMSDIEWIARI 218 +I R IV K + + L S N YP T+ +I + + Sbjct: 181 VIVSRNDGIVLKRVINRIEERGKLILKSDNKDGNYPTYTINAEEIMEVWYV 231 >gi|313668958|ref|YP_004049242.1| transcriptional regulator [Neisseria lactamica ST-640] gi|313006420|emb|CBN87883.1| putative transcriptional regulator [Neisseria lactamica 020-06] Length = 228 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F + G P +E++ KI +I LL Sbjct: 18 QAKIASDIEMTIAGFGRIWNEGG-----LPKSETLKKIKKLKGCSIDWLLTGEGEPFPGA 72 Query: 84 EKKE----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134 + ++ + G + + + I+ Sbjct: 73 KPEKPAACDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132 Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N + +++ ++ K L G Sbjct: 133 DVKNLSVISVKGDSMEGVLNDGDSILVNHSENTPKDGLYVLRINEN-LLVKRLQIVPGGI 191 Query: 193 IDLMSLNCCYPVDTV----EMSDIEWIARILW 220 I+++S N YP + D+E I R+ W Sbjct: 192 INVISANEAYPAFEINLNHPADDVEIIGRVEW 223 >gi|166712454|ref|ZP_02243661.1| LexA repressor [Xanthomonas oryzae pv. oryzicola BLS256] gi|289662678|ref|ZP_06484259.1| LexA repressor [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669641|ref|ZP_06490716.1| LexA repressor [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 213 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + +AR G + E++ + Sbjct: 6 TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G T P+ + P G + Sbjct: 54 AIRRVPGQARGIRLAGQGAQTRAAAVSEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|332362850|gb|EGJ40643.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 225 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 59/224 (26%), Gaps = 14/224 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61 FSH+K + + NL + + ++ G+ +++ + E + + K+ Sbjct: 1 MFSHEK----LKKRRLELNLAQASIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L +K+ + + S + S G + Sbjct: 57 QENYFVDETSTLYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGLGHS 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 IQ SM P Y G + ++ G + Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + ++ Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217 >gi|28199016|ref|NP_779330.1| hypothetical protein PD1124 [Xylella fastidiosa Temecula1] gi|182681734|ref|YP_001829894.1| putative phage repressor [Xylella fastidiosa M23] gi|28057114|gb|AAO28979.1| phage-related protein [Xylella fastidiosa Temecula1] gi|182631844|gb|ACB92620.1| putative phage repressor [Xylella fastidiosa M23] Length = 252 Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 56/235 (23%), Gaps = 29/235 (12%) Query: 13 IDRMAERHNLTPSGLARKAG---LDPTSFNKSKRFGIE-------GRNRWPSTESIFKIL 62 I ++ P +R+ G ++ R L Sbjct: 11 IKQLVAAAG-GPVEFSRRRGAGRWSQAQVSQWISETNPKGIGHKLARAIEAELGLPNAYL 69 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-- 120 T E + + P + + GN Sbjct: 70 DRLPSVDAPHPAGQHIKLDTYEFQAIDDDEKLDPEANVLVDEVDVMLSAGNGVLIPEFIE 129 Query: 121 -----PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 P + + SM D +++N A ++ Sbjct: 130 TKFRMPFPLPWLRHAHINPKDVKLMRVHGDSMERTLFDNDRVMVNFADTRIRDGKVYAIA 189 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD---IEWIARIL 219 G+ K L + R + ++S N Y + V ++ ++ + R++ Sbjct: 190 IGGEAKVKRLYTLRNNGLRIVSDNQNKDSEGHRIYKDEIVPPNEMETVQVLGRVI 244 >gi|94994459|ref|YP_602557.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] gi|94547967|gb|ABF38013.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] Length = 232 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 15/223 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + +T S L R ++ + + ++ + + + + Sbjct: 4 GHQLKTARLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L P++ + K++ + + + + Sbjct: 64 NYRLLTPYNQLTISNKEKVIGYSERLLNHQINKKSKDLIDKPSQLYAYRVYESLSAGTGY 123 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 Y D SM P Y G+++++ G + Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224 >gi|331006331|ref|ZP_08329645.1| SOS-response repressor and protease LexA [gamma proteobacterium IMCC1989] gi|330419878|gb|EGG94230.1| SOS-response repressor and protease LexA [gamma proteobacterium IMCC1989] Length = 204 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 60/217 (27%), Gaps = 35/217 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ I + E P + +A+ G + E Sbjct: 1 MLKLTSRQEQVLMLIKQNIEETGYPPTRAEIAKSLGFKSA---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + I L G G G+ Sbjct: 46 HLRALARK-------------GAIEMVPGASRGIRLPADEAKNDPGIPIVGRVAAGSPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + D + SM+ + GD+L ++ QV G ++ + Sbjct: 93 AEEHVQDHCAMPREFFQPSADYFLEVHGESMIDVGIHDGDLLAVHQTQQVTNGQIVVARI 152 Query: 176 RTGDIVAKVLISRRGRSI-DLMSLNCCYPVDTVEMSD 211 ++ K I +L++ N + V+++ Sbjct: 153 -GDEVTVKRFKKGPDSHIVELIAENPDFAPIIVDLTQ 188 >gi|291519392|emb|CBK74613.1| SOS-response transcriptional repressor, LexA [Butyrivibrio fibrisolvens 16/4] Length = 204 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 56/221 (25%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I P+ L L TS + + G R PS Sbjct: 9 KQREILEVIKTEILNRGYPPTVRELCDACNLKSTSSVHSHLETLEKNGYIKRDPSKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ + + + + G + + N Sbjct: 69 EIVDDSFNVVRREVVNVPVVGNVAAGQP--------------------LLAIQNISEYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P P+ Q + + SM+ GD +I+ GD ++ Sbjct: 109 IPAEHMPN-------AQSFMLRVKGESMINAGILDGDTIIVMQQDTAKNGDMVVALVD-D 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N V+ + ++ Sbjct: 161 SATVKTFYK-EDGHIRLQPENDNMDPIIVDN--CVILGKVF 198 >gi|167630618|ref|YP_001681117.1| lexa repressor [Heliobacterium modesticaldum Ice1] gi|167593358|gb|ABZ85106.1| lexa repressor [Heliobacterium modesticaldum Ice1] Length = 203 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 57/225 (25%), Gaps = 34/225 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M S K I I R PS + GL ++ + Sbjct: 1 MFELSERQKSILNYIRTEIRRRGYPPSVREIGDAVGLTSSSTVHGHLSR----------- 49 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + + L P S + T N Sbjct: 50 ------LEKAGFIRRDPAKPRALEVLAPDDDNGVERPLIDIPIVGRISAGSPILATENIE 103 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 NT +P + Q + SM+ GD++I+ + GD ++ Sbjct: 104 NTFPLPLD-------FIRTDQVFILTVRGESMINAGIHDGDLVIVRIQQTADNGDIVVAL 156 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + L N ++ ++ + +++ Sbjct: 157 -LGDEATVKRYFKEKD-YYRLQPENDYMEPILIK--EVHILGKVI 197 >gi|134299046|ref|YP_001112542.1| putative prophage repressor [Desulfotomaculum reducens MI-1] gi|134051746|gb|ABO49717.1| putative prophage repressor [Desulfotomaculum reducens MI-1] Length = 210 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 25/213 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + +N T L L + ++ I P +I KI Sbjct: 12 KRLLELMVDNNDTTYSLGEHLHLSNATISRYTTGDI-----APKIPTIEKIAEKYGVNPA 66 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + + + + + + + + Sbjct: 67 WLTGTEGASKYVEKTMPSKKIPIIGAIAAGIPILAQENI---DGYEYIPDNVSID----- 118 Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + SM+ GDI+ + QV G+ + + K + + Sbjct: 119 -------FCLRVKGDSMIGARILDGDIVYIRKQPQVENGEIAAVIIDNEEATLKRIYAL- 170 Query: 190 GRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 S+ L + N YP +M I I + + Sbjct: 171 NGSVILRAENPNYPDKVFSKKDMKQISIIGKAI 203 >gi|323486898|ref|ZP_08092214.1| LexA repressor [Clostridium symbiosum WAL-14163] gi|323691942|ref|ZP_08106192.1| LexA repressor [Clostridium symbiosum WAL-14673] gi|323399761|gb|EGA92143.1| LexA repressor [Clostridium symbiosum WAL-14163] gi|323504000|gb|EGB19812.1| LexA repressor [Clostridium symbiosum WAL-14673] Length = 204 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 66/220 (30%), Gaps = 35/220 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 ++I E I + P+ + L TS + ++ G R T+ Sbjct: 9 KQREILEYIKETILKKGYPPAVREICEAVRLKSTSSVHSHLEQLEKNGYIRRDPTK---- 64 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + +++ ++ +PLL +G+ N N + Sbjct: 65 ---------PRTIEIIDDTFNLARREVVNVPLLGTVAAGAPILAQE------NIENYFPI 109 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P P+ + K + SM+ GD +I+ A G+ ++ Sbjct: 110 PVEMLPN-------KEIFMLKVKGDSMIDAGIYNGDRVIVAKADTARNGEIVVALVD-DS 161 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N + +++ + +++ Sbjct: 162 ATVKTFYKEK-GRFRLQPQNASMDPIIL--DEVQILGKVI 198 >gi|139439633|ref|ZP_01773046.1| Hypothetical protein COLAER_02073 [Collinsella aerofaciens ATCC 25986] gi|133774974|gb|EBA38794.1| Hypothetical protein COLAER_02073 [Collinsella aerofaciens ATCC 25986] Length = 221 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 59/217 (27%), Gaps = 21/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I++ I + PS +A GL S + +E R + + L Sbjct: 16 QQQIYDFIKEYQQEKGYPPSVREMASAVGLSSPSTVHAHLSALEARGLLKRDATKPRALE 75 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 N + + L + G N +T +P Sbjct: 76 LFN----EDGSSVSISKSDEPTAPRGTVSLPLVGRVAAGIPI---LAEQNIEDTFTIPTE 128 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 A + +SM+ + GD +I+ G+ ++ G Sbjct: 129 I-------ATDQGSFILEVHGSSMINVGIFNGDYIIVREQKSAMNGEIVVAMID-GSATV 180 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N ++ + +++ Sbjct: 181 KTFYK-EQGRVRLQPENDTMEPIY--ATNPVILGKVV 214 >gi|84624451|ref|YP_451823.1| LexA repressor [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575920|ref|YP_001912849.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A] gi|71648696|sp|Q5GYM5|LEXA2_XANOR RecName: Full=LexA repressor 2 gi|84368391|dbj|BAE69549.1| LexA protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520372|gb|ACD58317.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A] Length = 213 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + +AR G + E++ + Sbjct: 6 TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G T P+ + P G + Sbjct: 54 AIRRVPGQARGIRLAGQGGQTRAAAVSEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|33601254|ref|NP_888814.1| LexA repressor [Bordetella bronchiseptica RB50] gi|33575689|emb|CAE32767.1| LexA repressor [Bordetella bronchiseptica RB50] Length = 242 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 24/215 (11%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 T + ++I + I + R P + +A+ G R P+ Sbjct: 29 TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 71 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 A I L P G G+ Sbjct: 72 DHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILA 131 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 E + QT D K + SM +GD+L + A + G ++ + Sbjct: 132 SEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-L 190 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + I+L+ N + V +D Sbjct: 191 GDEVTVKRLQRQ-NGRIELLPENPDFAPIVVANTD 224 >gi|329996256|ref|ZP_08302436.1| repressor protein C2 [Klebsiella sp. MS 92-3] gi|328539440|gb|EGF65447.1| repressor protein C2 [Klebsiella sp. MS 92-3] Length = 219 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 31/217 (14%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC--- 70 + + + LA G+ + + R PS E I KIL + Sbjct: 10 KSLMKTKGINQEELAEHLGITKGAVSHWLNA-----RREPSLEDIAKILRFLGKNNFSVG 64 Query: 71 ------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + K+ E P+L +GS + + + Sbjct: 65 AGGMIIDENIKGDVEYVGPYKRGNEYPVLSSVQAGSWREAIE-PYSIKDVDLWLESNAH- 122 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179 IQ + + SM +G ++ ++ + G ++ + + Sbjct: 123 --------IQGEAFWLLVEGDSMTSPVGLSIPEGTYVLFDTGREPVNGSLVIAKLSESNE 174 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 K LI G+ L LN +P+ + + I Sbjct: 175 ATFKKLIIDGGQKY-LKGLNPQWPLVPINGN-CRIIG 209 >gi|320107015|ref|YP_004182605.1| LexA family transcriptional repressor [Terriglobus saanensis SP1PR4] gi|319925536|gb|ADV82611.1| transcriptional repressor, LexA family [Terriglobus saanensis SP1PR4] Length = 201 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 58/220 (26%), Gaps = 32/220 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + K++ + + +++ +PS +A+ GL+ S ++ K Sbjct: 4 TRRQKEVIDFLTGFTQKNGYSPSYEEIAQGLGLN-------------------SLATVHK 44 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + ++ S G G + Sbjct: 45 HVTNLQ-------NKGLLQRAHNRSRSIDVLAPRTSRRMSDRLPLMGRIAAGKPVEAIEN 97 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E S + + + SM GD +++ G+ ++ D Sbjct: 98 AESISLSE--IIGNREVFALEVRGDSMRDEHIVNGDYVLVERTATARQGEIIVALVDGCD 155 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G I L N ++ ++L Sbjct: 156 ATLKRFYR-EGNMIRLQPSNAEMAPIYAPAENVVIQGKVL 194 >gi|52841492|ref|YP_095291.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628603|gb|AAU27344.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 246 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 15/225 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +KI I + LT LA L+ + N +R R P E I ++ Sbjct: 21 MSIKEKIGLRIKQERMSKKLTMKALAELTDNLNISRINNYERGE-----RTPGPEEIKQL 75 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGV 120 A + L+ L + + L + + + + Sbjct: 76 ARALEVSPSFLMCLSDDRQGSFKTPGLGGLLPILDYKSACYPALVIQRIKEESYSEKLDL 135 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-D 179 I S I +D SM P ++ DILI++ Q N GD ++ + + Sbjct: 136 IPISSTVQKR--IGKNAFALAVKDESMAPEFKFDDILIVDPDTQPNPGDYIVARLENEPE 193 Query: 180 IVAKVL----ISRRGRSIDLMSLNCCYPVDTVEMSDIEW-IARIL 219 I+ + +S+ +L+++N +P + E I ++ Sbjct: 194 IIIRKFKQLSVSKEKPEFELVAINNDWPDVKISKELNEIFIGSVI 238 >gi|33596638|ref|NP_884281.1| LexA repressor [Bordetella parapertussis 12822] gi|33573339|emb|CAE37323.1| LexA repressor [Bordetella parapertussis] Length = 242 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 24/215 (11%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 T + ++I + I + R P + +A+ G R P+ Sbjct: 29 TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 71 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 A I L P G G+ Sbjct: 72 DHLKALARKGAIELTAGASRGIRLKVPDNAAPSAQLTHPLLAQLVLPLVGRVAAGSPILA 131 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 E + QT D K + SM +GD+L + A + G ++ + Sbjct: 132 SEHVEREVGVDPGLFTQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-L 190 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + I+L+ N + V +D Sbjct: 191 GDEVTVKRLQRQ-NGRIELLPENPDFSPIVVANTD 224 >gi|171463202|ref|YP_001797315.1| transcriptional repressor, LexA family [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192740|gb|ACB43701.1| transcriptional repressor, LexA family [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 239 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 20/218 (9%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + +I E I + + L P + +A + G E R Sbjct: 16 PKLTPRQNEILELITKAIDESGLPPTRAEIATQLGFASA-------NAAEEHLRTL---- 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +P +T + L G G+ Sbjct: 65 AKKGYIELTPGTSRGIRIPQRFNQTHNSNKYRQLSLPSGALQQLTLPLIGRVAAGSPIMA 124 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 V E P + ++ D K + SM GD L + +V GD ++ + Sbjct: 125 VEHIEKHVPIDPSLFSKSADYLLKVKGMSMRDAGILDGDYLAVRKTTEVRNGDIVVARLD 184 Query: 177 TGDIVAKVLISR---RGRSIDLMSLNCCYPVDTVEMSD 211 ++ K + G I+L + N + V+ Sbjct: 185 -DEVTVKRWQQKKTANGIVIELQAENPDFKNILVDDRQ 221 >gi|182419527|ref|ZP_02950777.1| LexA repressor [Clostridium butyricum 5521] gi|237668516|ref|ZP_04528500.1| LexA repressor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376614|gb|EDT74188.1| LexA repressor [Clostridium butyricum 5521] gi|237656864|gb|EEP54420.1| LexA repressor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 201 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 59/221 (26%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 +I+E + E PS + L TS KR +G R PS Sbjct: 7 KQSEIYEFLKNYTENKGYPPSVREICEAVSLKSTSTVHGHLKRLEKKGLIRRDPSKPRAL 66 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I + +KE+ + + G T N +T Sbjct: 67 EIAELS-------------------TPKKEMISIPIVGKITAGLPI---LATENVEDTFS 104 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P H + + SM+ D+ I+ G+ ++ Sbjct: 105 LPLDFIKH------DKELFMLRVSGQSMIKAGINDKDLAIIERCNDAVNGEIVVALID-D 157 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N V D + +++ Sbjct: 158 SATIKRFFKEEN-HIRLQPENDTMDPIIV--DDCSILGKLV 195 >gi|110801397|ref|YP_695810.1| LexA repressor [Clostridium perfringens ATCC 13124] gi|168211846|ref|ZP_02637471.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|169344268|ref|ZP_02865249.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|123344807|sp|Q0TRD0|LEXA_CLOP1 RecName: Full=LexA repressor gi|110676044|gb|ABG85031.1| LexA repressor [Clostridium perfringens ATCC 13124] gi|169297599|gb|EDS79700.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|170710212|gb|EDT22394.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 203 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 59/221 (26%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59 +I+ + + PS + + L TS KR +G R P+ Sbjct: 9 KQTQIYNFLIEFTKSKGYPPSVREICQAVSLKSTSTVHGHLKRLEKKGLIYRDPTKPRAL 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ +N E L P + T N + Sbjct: 69 EIVELSN----------------------EEKELIDIPIVGKVTAGMPILATENIEDMFQ 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P HN K SM GD+ I+ GD ++ Sbjct: 107 IPINYVKHNN------DLFILKVTGDSMIEAGILDGDLAIIEQKNVATNGDIVVALI-EN 159 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N Y V D + +++ Sbjct: 160 EATIKRFFK-ENGFIRLQPENKNYEPIIV--EDCSILGKLV 197 >gi|73542066|ref|YP_296586.1| peptidase S24, S26A and S26B [Ralstonia eutropha JMP134] gi|72119479|gb|AAZ61742.1| Peptidase S24, S26A and S26B [Ralstonia eutropha JMP134] Length = 421 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 25/223 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG---------------RNRWPST 55 + I + +L LA+ ++P +W Sbjct: 197 DRIALVMAEQHLDVQQLAQLLAVEPAVVRAWLEPDSPKLGLLHAVRLQDAYGYSPKWLIN 256 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L E L F + ++IP+ G G F +P G+ Sbjct: 257 GQGEPKLGGAIEPELDEPSLAFDVFPIPQNSFRKIPVRGMAQLGDNGHFVDIEYPVGHGD 316 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 V P + SM P + + +++ Q+ GD +L K Sbjct: 317 GYVFFPTK----------DPDAYALRCNGESMRPRVKHNEFVVVEPNTQIQNGDEVLAKS 366 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + G ++ K L R + L S+N + + + IE + + Sbjct: 367 QDGRVMVKELAYIRDGIVHLSSVNERHGMVRIPQDQIERLHFV 409 >gi|15675164|ref|NP_269338.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|21910376|ref|NP_664644.1| putative repressor protein [Streptococcus pyogenes MGAS315] gi|28895952|ref|NP_802302.1| repressor protein [Streptococcus pyogenes SSI-1] gi|71903551|ref|YP_280354.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180] gi|139473727|ref|YP_001128443.1| phage repressor-like protein [Streptococcus pyogenes str. Manfredo] gi|209559469|ref|YP_002285941.1| Putative repressor protein [Streptococcus pyogenes NZ131] gi|13622327|gb|AAK34059.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|21904573|gb|AAM79447.1| putative repressor protein [Streptococcus pyogenes MGAS315] gi|28811202|dbj|BAC64135.1| putative repressor protein [Streptococcus pyogenes SSI-1] gi|71802646|gb|AAX71999.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180] gi|134271974|emb|CAM30212.1| putative phage repressor-like protein [Streptococcus pyogenes str. Manfredo] gi|209540670|gb|ACI61246.1| Putative repressor protein [Streptococcus pyogenes NZ131] Length = 232 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 15/223 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + +T S L R ++ + + ++ + + + + Sbjct: 4 GHQLKTARLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L P++ + K++ + + + + Sbjct: 64 NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 Y D SM P Y G+++++ G + Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224 >gi|313498878|gb|ADR60244.1| LexA repressor [Pseudomonas putida BIRD-1] Length = 205 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 66/216 (30%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K+ I+E I H PS +A + G S + Sbjct: 4 MDTLTPKRRAIFEFIHERIAEHGQPPSLADIATRFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + A + + + G + + +L P G P G + Sbjct: 48 ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILEIPVLGQVA----AGAPIGPDLD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 + + +T D K + SM+ GD++ + G ++ + Sbjct: 101 IHE----QLLLDPSLFRRTPDYLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L G + L+ N Y V+ Sbjct: 157 D-GEVTIKRLQRL-GGTYRLLPRNPAYAPIDVQPEQ 190 >gi|294012616|ref|YP_003546076.1| putative phage repressor [Sphingobium japonicum UT26S] gi|292675946|dbj|BAI97464.1| putative phage repressor [Sphingobium japonicum UT26S] Length = 220 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 8/218 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + +D + T S ++R G +P + + G R +I + L + Sbjct: 3 EDVRALLDEKIAQSKATYSDISRLIGRNPAYIQQFIKRGTPRRLDEQDRRTIARFLGISE 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L ++ + +G ++V + Sbjct: 63 HLLSGLPLEGAEPAPPSKPARSVSVPRLSLGASAGAGALDIDESAS---DSVAIDSRWLQ 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185 G+ + + SM P GD ++++ + D + + ++ K + Sbjct: 120 EIGV--RPPYVSIIRVDGESMTPTLNHGDEIMVDHSDNMSRLRDGIYVLRLDDVLLVKRV 177 Query: 186 IS-RRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILWA 221 R ++S N YP T V + + R++W+ Sbjct: 178 AMGLRRDEFSILSDNSLYPNRTNVNPELVTIVGRVVWS 215 >gi|91214797|ref|ZP_01251770.1| transcriptional regulator, putative [Psychroflexus torquis ATCC 700755] gi|91187224|gb|EAS73594.1| transcriptional regulator, putative [Psychroflexus torquis ATCC 700755] Length = 257 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 14/226 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +I ++ E +N T S A + ++ + +R + + K Sbjct: 1 MKTDLPPEIKRF-KQIREENNFTQSEFAEILNIKNST-SDIERGKT--KLSGQVIMMLLK 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-----TGNKW 115 +L + + K I + + + G+ Sbjct: 57 VLEVNPLWLFGESFQKKLNVHHINSMPKIISMDETKSRENMLLVNQKAAAGYPQNIGDAE 116 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLI 173 +P P + + SM P D ++ S + ++ + Sbjct: 117 WYHQLPAFEMPIPQF--RNATYRGFQVEGDSMEPNLHPEDWVLGKSVESLQQALNHKVYV 174 Query: 174 KPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ K L I L+S N YP VE S+I+ I + Sbjct: 175 FVLQDSVLVKKLHKHPNSHKISLISTNSYYPPYEVEASEIQEIWEV 220 >gi|300777929|ref|ZP_07087787.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503439|gb|EFK34579.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 262 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 67/226 (29%), Gaps = 21/226 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ FS+ I + R L+ +A + + ++K + E P E + K Sbjct: 1 MSVFSN-----NIRFLRARRKLSQQNVADELMISRVRYSKYENGISE-----PPIELLVK 50 Query: 61 ILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--N 113 I + +I L P + +P+ G Sbjct: 51 ISKYFHVSIDLILSVDLEKHPVDEMLKLPDNRIVLPVAVDTQGNDTIEIIPQKASMGYLE 110 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170 ++ + E + + SM P +R G ++ + ++ G Sbjct: 111 GYSDIEYIESLQRIALPFLNNGKYRAFPADGDSM-PPFRSGSYIVGKYVEGINELKEGKT 169 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + I K R+ +I + + N Y + ++ I Sbjct: 170 YVFVTLNDGITYKRFKERKENAICVSADNSFYEPYDIPFEEVVEIW 215 >gi|262279647|ref|ZP_06057432.1| peptidase S24 S26A and S26B [Acinetobacter calcoaceticus RUH2202] gi|262259998|gb|EEY78731.1| peptidase S24 S26A and S26B [Acinetobacter calcoaceticus RUH2202] Length = 223 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 59/221 (26%), Gaps = 12/221 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + T + +A + ++ + + I + L Sbjct: 3 LKDRLKDSRLKAKKTQAEVAEAVKMSQPAYQALESGKN---LKSAFLPLIAQFLGVDGYW 59 Query: 69 ----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPE 122 + T + + F ++ + +P Sbjct: 60 LTTGNTEDSFRESDVFSPTVVSAESTDQYVWIEVVEASFSCGTGESIEFHFDAINGKIPF 119 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 S Q K + SM + GD++ ++ + + G+ + Sbjct: 120 PASFFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMI 179 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 K + S+ L SLN + V + + + R W Sbjct: 180 KQIFKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220 >gi|163868319|ref|YP_001609528.1| LexA repressor [Bartonella tribocorum CIP 105476] gi|161017975|emb|CAK01533.1| SOS response regulator lexA protein [Bartonella tribocorum CIP 105476] Length = 237 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 63/230 (27%), Gaps = 14/230 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-R 51 M + ++ I + + PS L+ K+G+ +R I R Sbjct: 1 MLTCKQYELLLFIHNHIKETGVPPSFEEMKNALELSSKSGIHKLIIALEQRGFIRRLPNR 60 Query: 52 WPSTESIF---KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + E I KI + + + R K + G Sbjct: 61 ARAVEVIRLPEKITFNLSLARKISPSMIEKNKREISKNLINSDNFEAEEIKNITIPIMGR 120 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167 + + + + +D SM D +I+ Sbjct: 121 ISASVPASAIQQQTSTLSLPHDMVNTGEHYALEVKDNSMVEAGILDKDTIIVKRQNTAIS 180 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G+ ++ + K + G S+ L + N Y V T + +E + Sbjct: 181 GEIIVAFIDKKEATLKRYRRK-GTSVALEAANPHYEVRTYKSDRVEIQGK 229 >gi|83644889|ref|YP_433324.1| LexA repressor [Hahella chejuensis KCTC 2396] gi|123767473|sp|Q2SKC5|LEXA_HAHCH RecName: Full=LexA repressor gi|83632932|gb|ABC28899.1| LexA repressor [Hahella chejuensis KCTC 2396] Length = 200 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 64/225 (28%), Gaps = 40/225 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I E P + ++ + G R+ + E Sbjct: 1 MIKLTKRQEQVLQLIREHIEETGYPPTRAEISNRLGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L + + G G G Sbjct: 46 HLKALAKK--------------GAIEMVPGASRGIRLPASETQNQGIPIVGQVAAGYPIL 91 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + GD+L ++ ++ G ++ + Sbjct: 92 AQENIEEYCELPPSFFTPSADYFLRVKGMSMKDVGILDGDLLAVHRTTDIHNGQIVVARI 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 ++ K ++ + L+ N + V +S DIE + Sbjct: 152 -GDEVTVKRFQRQKN-KVLLLPENEEFEPIEVNLSQQPLDIEGLG 194 >gi|58582565|ref|YP_201581.1| LexA repressor [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427159|gb|AAW76196.1| LexA [Xanthomonas oryzae pv. oryzae KACC10331] Length = 225 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + +AR G + E++ + Sbjct: 18 TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 65 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G T P+ + P G + Sbjct: 66 AIRRVPGQARGIRLAGQGGQTRAAAVSEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 123 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 124 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 180 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 181 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 209 >gi|163791100|ref|ZP_02185520.1| LexA repressor [Carnobacterium sp. AT7] gi|159873656|gb|EDP67740.1| LexA repressor [Carnobacterium sp. AT7] Length = 207 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 13/115 (11%), Positives = 31/115 (26%), Gaps = 10/115 (8%) Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 + + +P N + SM+ GD +I+ Sbjct: 94 EPILAVEEATDYFPLPPNLQFEN------ESLFMLTIRGESMINAGIFDGDEVIIRKQGT 147 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 N GD ++ + K L N + +++ + +++ Sbjct: 148 ANNGDIVIAMTVDDEATCKRFYKEED-HYRLQPENDTMSPILL--NELTILGKVI 199 >gi|153814905|ref|ZP_01967573.1| hypothetical protein RUMTOR_01120 [Ruminococcus torques ATCC 27756] gi|317500417|ref|ZP_07958641.1| LexA repressor [Lachnospiraceae bacterium 8_1_57FAA] gi|331089576|ref|ZP_08338475.1| LexA repressor [Lachnospiraceae bacterium 3_1_46FAA] gi|145847936|gb|EDK24854.1| hypothetical protein RUMTOR_01120 [Ruminococcus torques ATCC 27756] gi|316898172|gb|EFV20219.1| LexA repressor [Lachnospiraceae bacterium 8_1_57FAA] gi|330404944|gb|EGG84482.1| LexA repressor [Lachnospiraceae bacterium 3_1_46FAA] Length = 205 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 59/221 (26%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I + P+ + L TS + + G R P+ Sbjct: 9 KQQEILEYIKSQILQRGFPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + P + N + Sbjct: 69 EILDDMFNLTRREMVH--------------------VPIIGQVAAGEPILAQENIEDYWP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 VP R P+ Q K + SM+ GD++++ + GD ++ Sbjct: 109 VPADRMPN-------KQTFFLKVKGESMINAGILDGDMVLVEEDSTASNGDMVVALI-ED 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V+ + + +++ Sbjct: 161 GATVKTFYKEE-GVFRLQPENDFMDPIIVKN--VTILGKVI 198 >gi|92117927|ref|YP_577656.1| putative phage repressor [Nitrobacter hamburgensis X14] gi|91800821|gb|ABE63196.1| putative phage repressor [Nitrobacter hamburgensis X14] Length = 220 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 61/211 (28%), Gaps = 16/211 (7%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATNETICQLLD 74 ++ + +GLA+ G P++ + E + R E + +T Sbjct: 11 LKKPGKSQTGLAKALGRAPSAITSLLKGTRELKAREIPIVKEYLESAPPPPKQTKIIHPS 70 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 P T + D G F G+ + V P A Sbjct: 71 GPEQSEVTKVSEGWPNTGERTVSVRGVAVGGDDGFFYFGDVIDRVKRPPGI-------AN 123 Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-----IVAKVLISR 188 SM P + G+++ + D ++ + K L+ R Sbjct: 124 AKDVEALNVAGESMAPRFGPGELIYIQLRPPAPGDDIVVEIYPEKEGDQSKGFLKRLVRR 183 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G + N +M +++ + R+L Sbjct: 184 TGLRLYCQQFNP-PADIEFDMGEVKNVWRVL 213 >gi|168483735|ref|ZP_02708687.1| phage transcriptional repressor [Streptococcus pneumoniae CDC1873-00] gi|168484791|ref|ZP_02709736.1| phage transcriptional repressor [Streptococcus pneumoniae CDC1873-00] gi|169833944|ref|YP_001693453.1| phage transcriptional repressor [Streptococcus pneumoniae Hungary19A-6] gi|307066657|ref|YP_003875623.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|168996446|gb|ACA37058.1| phage transcriptional repressor [Streptococcus pneumoniae Hungary19A-6] gi|172042015|gb|EDT50061.1| phage transcriptional repressor [Streptococcus pneumoniae CDC1873-00] gi|172042931|gb|EDT50977.1| phage transcriptional repressor [Streptococcus pneumoniae CDC1873-00] gi|306408194|gb|ADM83621.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 251 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 32/247 (12%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M++ K+I+ A ++++ + + L GL T+ + R E + Sbjct: 1 MSNNKSKEIFSANLEKLMTSRGVDRNKLCSDLGLKYTTVRDWLKGIT--YPRIGKIELLA 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKK--------------EKEIPLLYFPPSGSGGFFD 105 + + + + ++ +L + + Sbjct: 59 DYFGVNKSDLIEDKTQEVKEVKIPTSPLVQKVTEKVVKLSTPRKQKVLNYANEQLKEQNN 118 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRK 153 + + ++ + Y D SM P Y Sbjct: 119 KVIMIEEKLFEYKVYEKLSAGTGFSYFNDGNYDTVFYDKDLDHDFASWVFGDSMEPKYMN 178 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDI 212 G+++++ G + G K + + + L+S+N Y D Sbjct: 179 GEVVLIKETGFDYDG-AVYAVDWDGQTYIKKVYKEKDG-LRLVSINNKYKDKFAPFEEDP 236 Query: 213 EWIARIL 219 I +I+ Sbjct: 237 RIIGKIV 243 >gi|225567993|ref|ZP_03777018.1| hypothetical protein CLOHYLEM_04066 [Clostridium hylemonae DSM 15053] gi|225163281|gb|EEG75900.1| hypothetical protein CLOHYLEM_04066 [Clostridium hylemonae DSM 15053] Length = 205 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I P+ + L TS + + G R P+ Sbjct: 9 KQQEILEYIKAQILERGFPPAVRDICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + + P + N N Sbjct: 69 EILDDSFNFTRREMVN--------------------VPILGRVAAGEPILAEQNIENYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P Y Q K + SM+ GD +++ G+ ++ Sbjct: 109 IPME-------YMPNKQTFMLKVKGESMINAGILDGDYVLVEERKTARNGEMVVALVD-D 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N V D++ + +++ Sbjct: 161 GATVKTFYKEE-GIIRLQPQNDTMDPIIVR--DVQILGKVI 198 >gi|154504420|ref|ZP_02041158.1| hypothetical protein RUMGNA_01924 [Ruminococcus gnavus ATCC 29149] gi|153795349|gb|EDN77769.1| hypothetical protein RUMGNA_01924 [Ruminococcus gnavus ATCC 29149] Length = 205 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59 ++I E I P+ + L TS + + G R P+ Sbjct: 9 KQREILEYIKSQILERGFPPAVREICEAVNLKSTSSVHSHLETLERNGYIHRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + P + N N Sbjct: 69 EILDD--------------------EFNLLRREVVNVPLIGRVAAGEPLLAQENIENYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P P+ Q + + SM+ GD++++ GD ++ Sbjct: 109 IPVEMMPN-------KQTFLLEVKGESMVNAGILDGDMVLVQEEHTAENGDMVVALI-ED 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N V+ D+ I +++ Sbjct: 161 GATVKTFYREE-GIIRLQPENDFMDPIIVK--DVSIIGKVI 198 >gi|241765209|ref|ZP_04763193.1| SOS-response transcriptional repressor, LexA [Acidovorax delafieldii 2AN] gi|241365138|gb|EER60010.1| SOS-response transcriptional repressor, LexA [Acidovorax delafieldii 2AN] Length = 224 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 18/219 (8%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + ++I + I R P + +A + G E + + + Sbjct: 5 PKLTARQQQILDLIQTAIARTGAPPTRAEIATELGFKSA-------NAAEEHLQALARKG 57 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + ++++ T+ I + S + L P G G+ Sbjct: 58 VIELVSGTSRGIRLRSETVRSINAARGTQFS----LPLPGLSQLVLPLVGRVAAGSPILA 113 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + D K + SM GD+L + + + G ++ + Sbjct: 114 QEHVDQTYSVENSLFQHKPDYLLKVRGMSMRDAGIMDGDLLAVQATREARNGQIVVAR-L 172 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 D+ K L R SI+L+ N YP+ V+ ++ I Sbjct: 173 GDDVTVKRL-RRTASSIELLPENPDYPIIVVQPGEVFEI 210 >gi|218132482|ref|ZP_03461286.1| hypothetical protein BACPEC_00341 [Bacteroides pectinophilus ATCC 43243] gi|217992592|gb|EEC58594.1| hypothetical protein BACPEC_00341 [Bacteroides pectinophilus ATCC 43243] Length = 206 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 52/218 (23%), Gaps = 31/218 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I E I PS + L TS S + + L Sbjct: 9 KQSEILEYIKNQIVNKGYPPSVRDICEAVHLKSTS----------------SVHAHLETL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P G G V Sbjct: 53 EKNGYIRRDPTKPRAIEIIDDNFNLTRREVVNVP--------LIGQVAAGQPILAVENIT 104 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P + ++ + SM+ + GD++I+ + G+ ++ Sbjct: 105 NYFPIPAEFLNNSETFMLNVKGDSMINMGIYDGDMIIVRRQQTADNGEVIVALVD-DSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V+ +E + +++ Sbjct: 164 VKRFYK-EDGHYRLQPENDFMDPIIVDN--VEIVGKVI 198 >gi|330985775|gb|EGH83878.1| peptidase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 203 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 61/210 (29%), Gaps = 22/210 (10%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ +A + G+ P + R P E I + L Sbjct: 1 METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELG-------LPI 48 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNGI--YAI 133 + + PS + G V P S I Y Sbjct: 49 LTTSIPASEPGMHNVEPMVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISDYKA 108 Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISR 188 + + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 109 KGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATYKKLVED 168 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 169 -AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196 >gi|153948175|ref|YP_001401217.1| repressor protein C2 [Yersinia pseudotuberculosis IP 31758] gi|152959670|gb|ABS47131.1| repressor protein C2 [Yersinia pseudotuberculosis IP 31758] Length = 236 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 65/209 (31%), Gaps = 27/209 (12%) Query: 28 ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT---- 83 A+ G+ S K + + P E++ ++ + T +L + Sbjct: 40 AKAIGVSRVSVTKWESGITK-----PDGENLHRLAQTLSCTPEWILYGTGDLRQADDTNL 94 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + S G + G + ++ + + + Sbjct: 95 MPATVVPTAIPIISSVQAGVWTDTFSAVG-------ISDVLRWCSTTVKVSDSAFALDVR 147 Query: 144 DTSM-----LPLYRKGDILILNS---AIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSID 194 SM LP +G +I+ +I+ G +++ + + K L+ Sbjct: 148 GESMTNPNGLPSIPEGSTVIVEPNYGSIEDLYGKIVVVIIDGSSETTIKKLVVDGPNKY- 206 Query: 195 LMSLNCCYPVDTVEMSDIEWIARILWASQ 223 LM LN + ++ + + +++ +Q Sbjct: 207 LMPLNPNFKPIEIKGN-YRILGKVVQVTQ 234 >gi|227512434|ref|ZP_03942483.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227084407|gb|EEI19719.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 232 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 61/219 (27%), Gaps = 28/219 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAA----- 64 + + + +++++ + LA G S ++ + + P E I + Sbjct: 4 QNLRYLRKKNHMNQTELAHYLGRKSVASVSEWEAGKYTPKL--PILEKIAALFKVQANDL 61 Query: 65 ---------------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + T ++ + + +GV Sbjct: 62 LQYDLSRLNKSRDILSMYTQLVPERQQHVYEVIAQELQHQRDAAKVVELPLEILNIAGVA 121 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 G V R N + D K SM P + + ++ A + G Sbjct: 122 SAGTGEELVD---ERDQINYRGQLPKFDFAIKINGDSMEPRFHDQQVALVKKAFEAENGQ 178 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ G K ++ L+SLN Y V+ Sbjct: 179 IVIAYVD-GRSYIKQF-EHTEQTCRLISLNRKYAPIEVQ 215 >gi|313677598|ref|YP_004055594.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944296|gb|ADR23486.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 256 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 17/218 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + T LA + G+ + + P +++ K+ N + Sbjct: 4 INNNIKYLRKEKGWTQQDLADELGVKRPQIGSYEEGRAD-----PRIQTLLKLSDLFNVS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L K+ L S + + Sbjct: 59 VDDL-LGKDLSSPMVVTKKPTKVLAITVDSQERENIELVPQKASAGYTNGYADPEYLQEL 117 Query: 129 GIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDI 180 + + + + SMLP G I+I + S + G +I + Sbjct: 118 PRFQLPNLPRNSTYRAFEISGDSMLP-LEPGTIIIGEYVESPDSIRNGKTYIIVSEQEGV 176 Query: 181 VAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 V K + + + ++S N Y + + + I Sbjct: 177 VYKRVFNYAEEKGVLFMVSDNTVYSPYEIPIESVMEIW 214 >gi|150397120|ref|YP_001327587.1| putative phage repressor [Sinorhizobium medicae WSM419] gi|150028635|gb|ABR60752.1| putative phage repressor [Sinorhizobium medicae WSM419] Length = 238 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 62/235 (26%), Gaps = 31/235 (13%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE--GRNRWPSTESIFKILAAT 65 ++ + + + S LA G+ +SK + + R S + I + Sbjct: 7 ELKQWLAEKLAARGV-ASKLAEATGMSNDKITRSKELHSDDPKKRRQISLQEIEAMARFF 65 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--------------- 110 E + + + P F P Sbjct: 66 RELPPGFEQMTRWLEDLSPAPTAKPIPNASFPPRWQQFPGDASIPLRGHIAAGANGRFIM 125 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-D 169 G TV P G YA + S P + G+ +N +V G D Sbjct: 126 NGQDIATVFCPPGLEGVEGAYA-------VQVDGRSGEPRFLHGETAWVNPHQKVRQGDD 178 Query: 170 RLLIKPRTGDI--VAKVLISRRGRSIDLMSLNC---CYPVDTVEMSDIEWIARIL 219 ++ ++ K +SR + L N + + +++ Sbjct: 179 VVVQILEDDELSSYLKRFVSRSADVLRLYQYNPGKGESHDLEFPTDKVFSVHKVV 233 >gi|283456410|ref|YP_003360974.1| LexA repressor [Bifidobacterium dentium Bd1] gi|283103044|gb|ADB10150.1| LexA repressor [Bifidobacterium dentium Bd1] Length = 164 Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 12/142 (8%) Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 T + I + P + + + + +PE + Sbjct: 28 PFPTGVDSSESIMASHDVPLVGRIAAGVPITAEQHIDDVMRLPERLTGT-------GNLF 80 Query: 139 RHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 + SM+ GD +++ GD + + K + + L+ Sbjct: 81 MLEVHGDSMIDAAICDGDFVVVREQHTAENGDIVAALLD-DEATVKTF-RKDHGHVWLIP 138 Query: 198 LNCCYPVDTVEMSDIEWIARIL 219 N Y + + E + +++ Sbjct: 139 HNPAYSPI--DGTHAEIMGKVV 158 >gi|300781015|ref|ZP_07090869.1| repressor LexA [Corynebacterium genitalium ATCC 33030] gi|300532722|gb|EFK53783.1| repressor LexA [Corynebacterium genitalium ATCC 33030] Length = 223 Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 57/217 (26%), Gaps = 20/217 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I E I PS + AGL TS + +E + + + + Sbjct: 18 QRRILEVIQDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 77 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + IP++ +G+ N +PE Sbjct: 78 LRHLPENGRKKRKADPKPDDAAPPRYIPVVGQIAAGNPI------LAEENVDGYFPLPEE 131 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + SM GD + + + G + G+ Sbjct: 132 LVG-------DGDLYLLQVVGESMRDAGILDGDWVAVRTQPVAEEGQFVAALI-EGEATV 183 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L+ N + + D E + ++ Sbjct: 184 KEFHRDSSG-VWLLPHNEAFAPI--KGDDAEIMGLVV 217 >gi|119478465|ref|ZP_01618450.1| LexA repressor [marine gamma proteobacterium HTCC2143] gi|119448551|gb|EAW29798.1| LexA repressor [marine gamma proteobacterium HTCC2143] Length = 199 Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 40/215 (18%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + ++ + I E P + +AR+ G + ++ R + E Sbjct: 1 MTKLTQRQSEVLAVIKHHIEESGFPPTRADIARELGFKSA---NAAEEHLKALARKGAIE 57 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I + G G G+ Sbjct: 58 MIAGASRG------------------------------IRLPENKGIPIVGQVAAGSPIL 87 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + D + + SM+ + + D+L ++ G+ ++ + Sbjct: 88 AQEHIDDYCEMPASFFSPHADYFLRVKGDSMIDIGIFEDDLLAVHKTDNAENGEIVVARI 147 Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEM 209 ++ K L R + I L+ N Y V++ Sbjct: 148 D-DEVTVKRLKRTRSKYQILLLPENQDYQPIEVDL 181 >gi|85059205|ref|YP_454907.1| phage repressor [Sodalis glossinidius str. 'morsitans'] gi|84779725|dbj|BAE74502.1| phage repressor [Sodalis glossinidius str. 'morsitans'] Length = 240 Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 22/233 (9%) Query: 2 TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 T + ++ +A + + + LT +A G+ + + Sbjct: 5 TPLTPEQQADAARLKALYELKKKELGLTQYTIADHLGISQGAVGHYLNGRNP-----LNV 59 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + +I + + G Sbjct: 60 PIASEFASLLKVSIGDFSPSLAQTISQYLINNASNACNMSAFKKAYDYPLFSTIQAGFFT 119 Query: 116 NT---VGVPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVN 166 N + + R + + + SM P + +G +++++ V Sbjct: 120 NEAKAFSLSDARDWVSTTRKASDNAFWLEVEGHSMTSPAGSRPSFPEGMLILVDPKELVE 179 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD + D K I G + L LN +P+ T + + +++ Sbjct: 180 PGDFCIASMDGCDFTFKRYIKD-GGILYLEPLNPHFPLLTCN-ESCQLVGKVI 230 >gi|18310143|ref|NP_562077.1| LexA repressor [Clostridium perfringens str. 13] gi|168208151|ref|ZP_02634156.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|25453093|sp|Q8XL81|LEXA_CLOPE RecName: Full=LexA repressor gi|18144822|dbj|BAB80867.1| LexA repressor [Clostridium perfringens str. 13] gi|170660574|gb|EDT13257.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 203 Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 59/221 (26%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59 +I+ + + PS + + L TS KR +G R P+ Sbjct: 9 KQTQIYNFLIEFTKSKGYPPSVREICQAVSLKSTSTVHGHLKRLEKKGLIYRDPTKPRAL 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ +N E L P + T N + Sbjct: 69 EIVELSN----------------------EEKELIDIPIVGKVTAGMPILATENIEDMFQ 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P HN K SM GD+ I+ GD ++ Sbjct: 107 MPINYVKHNN------DLFILKVTGDSMIEAGILDGDLAIIEQKNVATNGDIVVALI-EN 159 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N Y V D + +++ Sbjct: 160 EATIKRFFK-ENGFIRLQPENKNYEPIIV--EDCSILGKLV 197 >gi|315149857|gb|EFT93873.1| helix-turn-helix protein [Enterococcus faecalis TX0012] Length = 273 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 75/243 (30%), Gaps = 34/243 (13%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + N++ +A + G+ ++ + ++ IE +I KIL T E Sbjct: 33 KVGERMKLRRKELNISADKIADELGVSRSTIFRYEKGDIEKLPTE-RLITIAKILKTTPE 91 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---------WNTV 118 + + + + + T + T+ Sbjct: 92 KLMGWNTSNDFSSIEAIYNKLDTTRKQKVYRYAEHQLEEQKRNTSDNKVIAFMPTKTTTI 151 Query: 119 GVPEIRSPHNGIY-------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + S G Y A D + SM P ++ G+I+ + + + Sbjct: 152 ELSGSLSAGGGAYNDKSRIESVEVGSAPSQYDLAFRVCGDSMYPTFQDGEIVFVKETMDI 211 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVE-MSDIEWIA 216 G G K + G + L+SLN Y + + D+ I Sbjct: 212 YNGQIG-AIEINGLAFIKKMY-LEGTRLRLVSLNAELDEDGNRLYSDFYADELDDLYVIG 269 Query: 217 RIL 219 R++ Sbjct: 270 RVI 272 >gi|299770880|ref|YP_003732906.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Acinetobacter sp. DR1] gi|298700968|gb|ADI91533.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Acinetobacter sp. DR1] Length = 223 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 59/225 (26%), Gaps = 20/225 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + T + +A + ++ + + I + L Sbjct: 3 LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKN---LKSAFLPLIAQFLGVDGYW 59 Query: 69 ICQLLDLPFSDGRTTEKKE----------KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + I ++ S G F N + Sbjct: 60 LTTGNTEDAFRESDVFSPTVVSAESTDQYAWIEVVEASFSCGTGESIEFHFDAING--KI 117 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 P + Q K + SM + GD++ ++ + + G Sbjct: 118 PFPASFFKEKRV--AQDCMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAG 175 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 + + K + S+ L SLN + V + + + R W Sbjct: 176 EGMIKQIFKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220 >gi|325661575|ref|ZP_08150199.1| LexA repressor [Lachnospiraceae bacterium 4_1_37FAA] gi|331084865|ref|ZP_08333953.1| LexA repressor [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472102|gb|EGC75316.1| LexA repressor [Lachnospiraceae bacterium 4_1_37FAA] gi|330410959|gb|EGG90381.1| LexA repressor [Lachnospiraceae bacterium 9_1_43BFAA] Length = 205 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 60/221 (27%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I P+ + L TS + + G R P+ Sbjct: 9 KQEEILEYIKSELLSKGYPPAVREICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ T T ++ +P++ +G+ N N Sbjct: 69 EIMDDT--------------FNLTRREVVNVPVIGRVAAGAPI------LAEENIENYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + + SM+ GD +++ GD ++ Sbjct: 109 IPME-------FMPNEKTFLLSVKGESMINAGILDGDYVLIKQQSNAENGDMVVAL-VED 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V +E + +++ Sbjct: 161 GATVKRFFKEE-GVYRLQPENDFMDPIIV--ESVEILGKVI 198 >gi|293608631|ref|ZP_06690934.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829204|gb|EFF87566.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325121552|gb|ADY81075.1| hypothetical protein BDGL_000489 [Acinetobacter calcoaceticus PHEA-2] Length = 223 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 59/221 (26%), Gaps = 12/221 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + T + +A + ++ + + I + L Sbjct: 3 LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKN---LKSAFLPLIAQFLGVDGYW 59 Query: 69 ----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPE 122 + T + + F ++ + +P Sbjct: 60 LTTGNTEDSFRESDVFSPTVVSAESTDQYVWIEVVEANFSCGTGESIEFHFDAINGKIPF 119 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 S Q K + SM + GD++ ++ + + G+ + Sbjct: 120 PASFFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMI 179 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 K + S+ L SLN + V + + + R W Sbjct: 180 KQIFKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220 >gi|17546023|ref|NP_519425.1| LexA repressor [Ralstonia solanacearum GMI1000] gi|25453094|sp|Q8XZU1|LEXA_RALSO RecName: Full=LexA repressor gi|17428318|emb|CAD15006.1| probable lexa repressor . transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 216 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 23/216 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I + +R P + +A + G + + E Sbjct: 1 MATLTTRQQQIYDLIHQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LA R L G G+ Sbjct: 45 EHLRALARKGVIELTPGASRGIRLRAEGGASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + D K + SM GD+L + A + G ++ + Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRAAEAANGKIVVAR- 163 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + GR ++L++ N + V++ Sbjct: 164 LGDDVTVKRFQRK-GRQVELIAENPDFEPIHVDLDR 198 >gi|313903969|ref|ZP_07837349.1| transcriptional repressor, LexA family [Eubacterium cellulosolvens 6] gi|313471118|gb|EFR66440.1| transcriptional repressor, LexA family [Eubacterium cellulosolvens 6] Length = 224 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 58/221 (26%), Gaps = 19/221 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 +I + + PS + GL TS + G R +T+ + Sbjct: 10 KQLEILNYLKKEILLRGFPPSVREICEAVGLKSTSSVHAHLESLEKNGYIRKDATK--PR 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + ++ + + + P + + V Sbjct: 68 AIEILDDDFRE--ERFRRITPDPSIDTSKPSEFQQVPVIGNVAAGQPLLAVEAVESYFPV 125 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + P+ Q + + SM+ GD++++ G+ ++ Sbjct: 126 PVSKLPN-------AQTFMLRVRGESMINAGILDGDLVLVKQQETAANGEMVVALID-DS 177 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 K + I L N V + + ++ Sbjct: 178 ATVKTFYREKD-HIRLQPENDHMDPIIVTPDQNFKILGLVI 217 >gi|302526394|ref|ZP_07278736.1| LexA repressor [Streptomyces sp. AA4] gi|302435289|gb|EFL07105.1| LexA repressor [Streptomyces sp. AA4] Length = 217 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 63/220 (28%), Gaps = 34/220 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFK 60 + I I RH +PS + GL +S +K + R PS Sbjct: 20 QQHILATIRDWVGRHGYSPSTREIGEAVGLRSTSSVSKHLAALEDKGFLRRSPSVSRPID 79 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A + +E P + + + + + + Sbjct: 80 VRAFLGD-----------------LPSRESRDSVPVPVVGDIAAGTPISAQEHVDDVMQL 122 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + + SM+ GDI+++ + + G + + Sbjct: 123 PRGLTG-------RGTVFGLRVRGDSMVDAAICDGDIVVVKQQSEAHSGQIVAAMID-EE 174 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + RR + L N Y ++ + ++ Sbjct: 175 ATVK-VYRRRDGHVYLEPRNPAYE--VIDGDRATVLGVVV 211 >gi|167758153|ref|ZP_02430280.1| hypothetical protein CLOSCI_00491 [Clostridium scindens ATCC 35704] gi|167664050|gb|EDS08180.1| hypothetical protein CLOSCI_00491 [Clostridium scindens ATCC 35704] Length = 226 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 59/221 (26%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I P+ + L TS + + G R P+ Sbjct: 30 KQQEILEYIKSQILERGFPPAVRDICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 89 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + + P + N N Sbjct: 90 EILDESFNFTRREMVN--------------------VPMVGRVAAGEPLLAEQNVENYFP 129 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + Q + + SM+ + GD++++ G+ ++ Sbjct: 130 IPME-------FMPNNQTFMLRVKGDSMINIGIFDGDLVLVEQRQTARNGEVIVAL-VED 181 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V+ +++ + +++ Sbjct: 182 GATVKRFFKEE-GVFRLQPENDALDPIIVK--EVQILGKVI 219 >gi|7328297|emb|CAB82463.1| SOS regulatory LexA protein, putative [Staphylococcus aureus subsp. aureus COL] Length = 190 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 57/213 (26%), Gaps = 30/213 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + +I+ I ++ + PS + GL ++ + R +G R Sbjct: 1 MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + ++ +++ + K + N Sbjct: 61 TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 + K + L N Sbjct: 159 MTEEDEATVKRFYKEKN-CYRLQPENSTMEPIY 190 >gi|282909328|ref|ZP_06317144.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958772|ref|ZP_06376218.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] gi|282326896|gb|EFB57193.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789812|gb|EFC28634.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 239 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 68/236 (28%), Gaps = 32/236 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + NLT L K + + + R P + +F+I N + Sbjct: 10 IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGY-----RTPKQDDLFEIAHILNIS 64 Query: 69 ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGG---------------FFDSG 107 I L + ++ +L + Sbjct: 65 IDDLFPTRNNKKNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 124 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 TG +I +T D SM P+ ++G + Sbjct: 125 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 184 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V SDI+ + +++ Sbjct: 185 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSDIKVMGKVV 238 >gi|255318670|ref|ZP_05359900.1| Peptidase S24-like domain protein [Acinetobacter radioresistens SK82] gi|262379502|ref|ZP_06072658.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255304271|gb|EET83458.1| Peptidase S24-like domain protein [Acinetobacter radioresistens SK82] gi|262298959|gb|EEY86872.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 232 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 68/222 (30%), Gaps = 15/222 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S + AID + + + L+P+ ++ + R Sbjct: 5 SLRRANLRRAIDAKNKSEGFSSDAAFCEHYDLNPSHISQLVKGHGSFGERAARNLEKKVG 64 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + ++ + + + G F + + +P Sbjct: 65 WESGLLDQEPTKNIFGEESFANVPRVRARMAPVLSWVQVGSFTNVAAVDMSEVSQWLPLP 124 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI---QVNCGDRLLIKPRTG 178 E + + Q S P + +GD +++N + GD ++++ R Sbjct: 125 ED---------ECSNCFFLQVQGISNFPDFIEGDYIVVNPDAYYGDMQSGDIIVVR-RGE 174 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 D K L+ L +LN + + +E + ++ +++ Sbjct: 175 DATFKKLVIETNGKRYLQALNPDFKPNIIEFDEECHFVGQVV 216 >gi|225871921|ref|YP_002753375.1| LexA repressor [Acidobacterium capsulatum ATCC 51196] gi|225792719|gb|ACO32809.1| LexA repressor [Acidobacterium capsulatum ATCC 51196] Length = 198 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 57/222 (25%), Gaps = 33/222 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT K++ + I +R+ +PS +AR GL+ S + Sbjct: 1 MTKR-QKEVLDFITGFVQRNGYSPSFEEIAR--GLNLKSLATVHKHITN----------- 46 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L D + + + L + G + Sbjct: 47 ---LQNKGLLARAHNRSRSLDVLPPRSRGRSVDRLPLMGRIAAGRPVEAAENAESI---- 99 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRT 177 G + + SM GD +++ G+ ++ R Sbjct: 100 --------SLGDIIGNREVFALQVHGESMRDEHIVDGDYVLVERTNTARQGEIIVALVRG 151 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K G + L N V + + R+L Sbjct: 152 AETTLKRFY-LEGSMVRLQPSNAEMNPIIVPAAQVAIQGRVL 192 >gi|167855686|ref|ZP_02478443.1| LexA repressor [Haemophilus parasuis 29755] gi|167853204|gb|EDS24461.1| LexA repressor [Haemophilus parasuis 29755] Length = 209 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 35/218 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I+E + E + P+ +AR+ G + E + + Sbjct: 10 QQEIFEFVKNHIESTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + + I + + G G G + E Sbjct: 55 K-----------GYIEMLSGTSRGIRILVEDEAANDEEGLPLIGKVAAGTPIEAIEHIEK 103 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG D K SM + GD+L ++ V G ++ + ++ Sbjct: 104 HYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVD-DEVTV 162 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N ++ +IE IA Sbjct: 163 KRLEKK-GDLIYLHPENDELEPIIIDPRQSYIEIEGIA 199 >gi|323516288|gb|ADX90669.1| S24 family peptidase [Acinetobacter baumannii TCDC-AB0715] Length = 229 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 74/225 (32%), Gaps = 18/225 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + ++++ T +GL++K+G+ + + + + P ++ K+ + Sbjct: 3 LQKNVKYLLKKYSTTTTGLSKKSGVPQPTLFRWENGQY----KEPKISTVEKLASWAGYD 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG------FFDSGVFPTGNKWNTVGV-- 120 LL+ E+ L + G+ + V Sbjct: 59 ANTLLNNDLEAIDNINNDLDELVLDNNVNLSNKIKLDGEQIPVISWVAAGSFTDVQTVLK 118 Query: 121 -PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKP 175 E+ + TSMLP + GD + +N V ++ Sbjct: 119 DTEVLEWLPPMKKAGKNGYGLIVTGTSMLPKFEPGDRIYVNPDYPVFDLKTNDLVIVSCA 178 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 K LI G L LN +P +++ + + + +++ Sbjct: 179 GDTQATFKRLIIEDGEEKYLEPLNTKWPEQIIKLTEECKLVGKVV 223 >gi|120602458|ref|YP_966858.1| phage repressor [Desulfovibrio vulgaris DP4] gi|120562687|gb|ABM28431.1| putative phage repressor [Desulfovibrio vulgaris DP4] gi|311233917|gb|ADP86771.1| putative phage repressor [Desulfovibrio vulgaris RCH1] Length = 216 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 13/192 (6%) Query: 32 GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 G++ ++ ++K + I ++ A + L + Sbjct: 29 GVNRSAVTQAKNRDAIPQK------WILQLARAYHLAPDWLEFGKGRQHQPPTSLHDPET 82 Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 +L + +G + G SM P Sbjct: 83 VLVPRVKAVLSAGGGSLDVSGGVVENLPFRYDWLARRGH---PAHMVLMNVTGDSMEPGI 139 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 R GD L+++ + + I+ K +I L+S N Y + + Sbjct: 140 RHGDTLLIDQSHVTAQTGGVYAFGYEDSILVKRFGRD-ADAILLLSDNTAYAPIRIRGDE 198 Query: 212 ---IEWIARILW 220 + I +I+W Sbjct: 199 ADLLHVIGKIVW 210 >gi|262163862|ref|ZP_06031602.1| transcriptional regulator [Vibrio mimicus VM223] gi|262027842|gb|EEY46507.1| transcriptional regulator [Vibrio mimicus VM223] Length = 220 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 40/208 (19%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA K G+ + K G + K ++ T +T +L + Sbjct: 36 SELAEKLGISTKTIYTWKERGKIPE----KILLLAKKISNTEKTKIELAETRMVILT--- 88 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSPHNGIYAI-----QTQDT 138 + GN + +P S + Sbjct: 89 -------------------YYDIEASAGNGTLVQMEMPTEISFSQDYLMKELHVKPSDVF 129 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 + SM P + G ++I+ + GD + + ++ K L + I S Sbjct: 130 MMRVSGDSMYPTLQDGALIIV-KNMSDFYGDGVYVFRINEQVMVKRLQFQP-TKIIFKSD 187 Query: 199 N-CCYPVDTVEMSDIE-----WIARILW 220 N Y V ++E + R++W Sbjct: 188 NIHLYEPWEVLHKELEGIDFKILGRVIW 215 >gi|317055026|ref|YP_004103493.1| transcriptional repressor, LexA family [Ruminococcus albus 7] gi|315447295|gb|ADU20859.1| transcriptional repressor, LexA family [Ruminococcus albus 7] Length = 194 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 44/183 (24%), Gaps = 6/183 (3%) Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 F K EG P+ I + + + EK + + + Sbjct: 11 FEFIKERVEEGYP--PTVREICSHFGFKSTSTAHRYIKTLTSKGFLEKSDNQNRAIKLVG 68 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 G G G + K + SM+ GD Sbjct: 69 GGGMLIPLVGTVTAGTPITAIEYVSEYISFQPARHYGNPLFALKVRGESMINAAILDGDT 128 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +++ G ++ D K L N ++ +E + Sbjct: 129 VVVEQTPFAENGQIVVALVEGSDATVKTFYKEE-GHFRLQPENDTMDPIILDN--VEILG 185 Query: 217 RIL 219 R++ Sbjct: 186 RVV 188 >gi|219870292|ref|YP_002474667.1| LexA repressor [Haemophilus parasuis SH0165] gi|254809099|sp|B8F317|LEXA_HAEPS RecName: Full=LexA repressor gi|219690496|gb|ACL31719.1| LexA repressor/SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Haemophilus parasuis SH0165] Length = 209 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 66/218 (30%), Gaps = 35/218 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I+E + E + P+ +AR+ G + E + + Sbjct: 10 QQEIFEFVKNHIESTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + + I + + G G G + E Sbjct: 55 K-----------GYIEMLSGTSRGIRILVEDEAANDEEGLPLIGKVAAGTPIEAIEHIEK 103 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG D K SM + GD+L ++ V G ++ + ++ Sbjct: 104 HYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVD-DEVTV 162 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N V+ +IE IA Sbjct: 163 KRLEKK-GDLIYLHPENDELEPIVVDPRQSYIEIEGIA 199 >gi|312621143|ref|YP_004022756.1| lexa repressor [Caldicellulosiruptor kronotskyensis 2002] gi|312201610|gb|ADQ44937.1| LexA repressor [Caldicellulosiruptor kronotskyensis 2002] Length = 819 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 I + + K + SM + GDI I+ D ++ G+I K Sbjct: 724 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVI-AWLDGEITVKRFCKM 782 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ L+ N Y ++ ++ + +++ Sbjct: 783 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 812 >gi|114321148|ref|YP_742831.1| putative phage repressor [Alkalilimnicola ehrlichii MLHE-1] gi|114227542|gb|ABI57341.1| putative phage repressor [Alkalilimnicola ehrlichii MLHE-1] Length = 247 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 13/203 (6%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86 A+K G+ + K + G + I + + G T + Sbjct: 44 FAQKCGMSDSLIRKYLEGSMPGLEK---LIMIARAADIRVGWLATGELPVRDCGETAGLR 100 Query: 87 EKEIPLLYFPPSGSGGFFDSGV------FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140 + + + P + + R G Sbjct: 101 VASSLQTRYAGEFALIPWYDAQSHPSADQPAEQRMLER-LAFRRDWLLGEGLAPDGLVLV 159 Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200 SM+P GD+L++++ Q D + + +VAK L + + S N Sbjct: 160 GAGGDSMVPTVADGDLLLVDTREQEPAEDAIYVLRLEHHVVAKRLQVDWKGGLWVRSDNP 219 Query: 201 CYPVDTV---EMSDIEWIARILW 220 Y + + +++ + R++W Sbjct: 220 QYADQHISTEDAAELNIVGRVVW 242 >gi|299483505|gb|ADJ19586.1| putative transcriptional repressor protein [Treponema primitia ZAS-2] Length = 242 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 72/221 (32%), Gaps = 23/221 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + E + + + LT G A GL + ++ PS E++ K+ Sbjct: 34 LSMENERERFNFIQKTTGLTKKGFAESLGLSKALGYQISTGMLK-----PSRETLEKLSF 88 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 N + L E ++ I LL + G + T+ +P Sbjct: 89 IYNVNLNWFLLGEG---SPFETEKATIKLLRQEAAAGQGREIEDY----AEEETLKLPRS 141 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 SM+ GD +I + + G+ + + ++ Sbjct: 142 LISPYR----PENLQAVYVAGDSMIGEHIYNGDAVIFHPGLT--EGNGIYVLSLDTSLLV 195 Query: 183 KVLISRR-GRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 K + RS+ L+S N YP + +++E R++ Sbjct: 196 KRVSFDELPRSVFLISANPAYPPRQISGAELENLRIQGRVV 236 >gi|148547009|ref|YP_001267111.1| putative prophage repressor [Pseudomonas putida F1] gi|148511067|gb|ABQ77927.1| putative prophage repressor [Pseudomonas putida F1] Length = 217 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 14/200 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + R HNL+ LA + G+ R R P+ E+I + L Sbjct: 6 AFLKRYKREHNLSQLQLAERLGMTQGGVGHWLRGT-----RRPTLETINEKLEKLGLVFL 60 Query: 71 QLLDL-PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + D + + F V +PE + H Sbjct: 61 EAQVMVVERDIVREAQGLYTAEQPVSAEALLYASFRFPVLS--WADLQGPLPETSTSHEQ 118 Query: 130 I-YAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y ++ SM +G +++++ ++ G ++ + V + Sbjct: 119 TDYMPAGNAFWLVVENDSMNAASGKSVPEGMRVLVDTGLEAQPGRLVIARQPGRPAVLRQ 178 Query: 185 LISRRGRSIDLMSLNCCYPV 204 L+ G L LN YP Sbjct: 179 LVEEGGDK-MLRPLNTRYPT 197 >gi|312794624|ref|YP_004027547.1| lexa repressor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181764|gb|ADQ41934.1| LexA repressor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 819 Score = 82.1 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 I + + K + SM + GDI I+ D ++ G+I K Sbjct: 724 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVIAWLD-GEITVKRFCKM 782 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ L+ N Y ++ ++ + +++ Sbjct: 783 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 812 >gi|160899002|ref|YP_001564584.1| LexA repressor [Delftia acidovorans SPH-1] gi|229621210|sp|A9BWH9|LEXA_DELAS RecName: Full=LexA repressor gi|160364586|gb|ABX36199.1| transcriptional repressor, LexA family [Delftia acidovorans SPH-1] Length = 224 Score = 82.1 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 18/219 (8%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + ++I + I R P + +A G E + + + Sbjct: 5 PKLTARQQQILDLIQAAISRTGAPPTRAEIANTLGFKSA-------NAAEEHLQALARKG 57 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + ++++ T+ I D + L G G+ Sbjct: 58 VIELVSGTSRGIRLRTDTVRNINAARGTSFG----LPLSALAPLMLPLVGRVAAGSPILA 113 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + D + + SM GD+L + SA + G ++ + Sbjct: 114 QEHIDQTYSVEPSLFQTRPDYLLRVRGMSMRDAGIMDGDLLAVQSAHEARNGQIVVAR-L 172 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 ++ K L + ++L+ N YPV V + I Sbjct: 173 GDEVTVKRLRRTT-QGVELLPENPDYPVIRVAPEEAFAI 210 >gi|24372232|ref|NP_716274.1| prophage MuSo1, Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] gi|24346153|gb|AAN53719.1|AE015511_2 prophage MuSo1, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] Length = 240 Score = 82.1 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 18/226 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E + + + A K PS + + +I N Sbjct: 17 ESFGERLKELMGDE--SLRAFANAIDTSEGGVRKWFTQST-----MPSFDKMVRIARRYN 69 Query: 67 ETICQLLDLPFSDGRTTEK--KEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPE 122 + L + F + TG+ W+ V Sbjct: 70 VNLEWLCTGEGPKFPGETAAYESVICKTEEFSEEYALIDGYHTQVSTGHGAQWDNERVRR 129 Query: 123 IRSPHNGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + SM P GD ++++ + + Sbjct: 130 KLAFRSKWLRYRGLQPENLRVVFAKGDSMEPTIHSGDSILVDITDANLSDGSIFVLRIGD 189 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 D+ AK + SI ++S N Y V +++ + + +++W Sbjct: 190 DLFAKRVQVHIDGSITIISDNKEYREQRVPVAELGLLSVVGKVVWI 235 >gi|222528077|ref|YP_002571959.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725] gi|222454924|gb|ACM59186.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725] Length = 819 Score = 82.1 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 I + + K + SM + GDI I+ D ++ G+I K Sbjct: 724 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVIAWLD-GEITVKRFCKM 782 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ L+ N Y ++ ++ + +++ Sbjct: 783 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 812 >gi|262040942|ref|ZP_06014166.1| transcriptional activator-regulatory protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041714|gb|EEW42761.1| transcriptional activator-regulatory protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 240 Score = 82.1 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 62/218 (28%), Gaps = 16/218 (7%) Query: 12 AIDRMAERHNL----TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + ++ L + +A++ L P + +K P ++ + + Sbjct: 18 RLALACDKAGLMPHGRQAEIAKRMKLTPKAVSKWFNGESI-----PRRGTLQALASHIGT 72 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125 + LL DG + GV +V + Sbjct: 73 SASYLLGDADEDGIEPGSATNRKDVFRVDLLDIAVSAGPGVVNQEFVEILRSVEYEPAEA 132 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H + SM GD+L ++ +++ GD + K L Sbjct: 133 RHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDISVKSFDGDGIYAFLYDDTAHVKRL 192 Query: 186 ISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219 + + ++S N Y +E + + +++ Sbjct: 193 QKMKD-KLLVISDNKSYAAWDPIEKDEMNRVFVFGKVI 229 >gi|311747894|ref|ZP_07721679.1| transcriptional regulator [Algoriphagus sp. PR1] gi|126575888|gb|EAZ80198.1| transcriptional regulator [Algoriphagus sp. PR1] Length = 231 Score = 82.1 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 65/229 (28%), Gaps = 32/229 (13%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN----- 66 I + ++ NLT +A G+ + + P +++ K+ A Sbjct: 6 NIKFLRKQKNLTQEIMASTIGISRSKLAGYESSVN------PPLDTLVKLSDALGVSLDI 59 Query: 67 ------ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + + K L + + Sbjct: 60 LLREDLTSYSEYKLRELLETDQFLRGRKLRILATTVDEQGRELIEVVSQRAKASYLAGFA 119 Query: 121 PEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLL 172 +A+ + + SMLP G ++ ++ + V G+R + Sbjct: 120 DPEYISELPRFALPFLPTDKKHRVFQVDGDSMLP-IPDGAWIVCEYVDDWLAVKDGERYV 178 Query: 173 IKPRTGDIVAK----VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 I + K + + + L S N YP VE+ + I R Sbjct: 179 IVTEQDGVTFKLAYNRIQ--SDQKLLLCSANPIYPPFEVEIDQVREIWR 225 >gi|187939670|gb|ACD38813.1| predicted transcriptional regulator protein [Pseudomonas aeruginosa] gi|187939749|gb|ACD38890.1| hypothetical protein PACL_0632 [Pseudomonas aeruginosa] Length = 271 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 29/262 (11%), Positives = 55/262 (20%), Gaps = 56/262 (21%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-----------------------IEGRN 50 + +LT LA G+ ++ ++ GR Sbjct: 2 KLARKHADLTQRQLAEAVGVSQPVISQLEKGENLQSVHLLKIANVCGVDPEWLAEGTGRP 61 Query: 51 -----RWPSTESIF--------------KILAATNETICQLL-DLPFSDGRTTEKKEKEI 90 R PS E K + + + + SD E Sbjct: 62 PGFSAREPSAEYQAASSTADIVRSMLASKAAQKLSAEARERILNAAESDAGPAESNVIHA 121 Query: 91 PLLYFPPSGSG---GFFDSGVFPTGNKW---NTVGVPEIR-------SPHNGIYAIQTQD 137 G Y Sbjct: 122 DFSRTTLVKGNTISIAQYDVRAAMGGGQVPAEYREFVRNLVVDKVQLDDLGLKYTDPANL 181 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 SML ++++ I + + + + K + L+S Sbjct: 182 KIITGWGQSMLGTIEDKSPILVDVGITDFVEEGVYVFTWLQHLFVKRVQIHDAEHYLLVS 241 Query: 198 LNCCYPVDTVEMSDIEWIARIL 219 N + M D+ + A++L Sbjct: 242 DNKSFEPQKARMEDVHFQAKVL 263 >gi|209543675|ref|YP_002275904.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5] gi|209531352|gb|ACI51289.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5] Length = 212 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 62/213 (29%), Gaps = 31/213 (14%) Query: 28 ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKE 87 A +G+ S N R + F+I A ++ L+ S Sbjct: 9 AAASGVPLGSLNNYLAG------REMKASTAFRIARACGVSLEWLVTGADSGTGPVPDAA 62 Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNG----IYAIQTQDTRH 140 + L P G+ + V I + ++A + + Sbjct: 63 QFDEYLVVPR-------YDDELAAGSGSVATDQAPVEAIGVGRSLLPQSVWAARDRLVAL 115 Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200 + SM P GD++ ++ A + + + ++ K L R + + S N Sbjct: 116 TVRGDSMEPTLSNGDLVFVDRARERLVSGAIYVIRAGEQLLVKRLEQRIDGDLVVTSDNK 175 Query: 201 CYPVDTVEMSDIE-----------WIARILWAS 222 Y V + RI+W S Sbjct: 176 RYSEQVVSAEQARQLWNGGNAPATIVGRIVWRS 208 >gi|259046516|ref|ZP_05736917.1| transcriptional repressor LexA [Granulicatella adiacens ATCC 49175] gi|259036681|gb|EEW37936.1| transcriptional repressor LexA [Granulicatella adiacens ATCC 49175] Length = 207 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 56/230 (24%), Gaps = 42/230 (18%) Query: 1 MTSFS---HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50 MT+ + + I + + H P+ + L TS ++ ++ G Sbjct: 1 MTNLKDSRQLDVLQFIYKEVQEHGYPPTVREICNAVQLSSTSTVHGHLSRLEKNGFI--Q 58 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R PS ++ T + P + Sbjct: 59 RDPSKPRAIEL--------------------TMAGLKAIGAKATAIPMLGVVTAGEPILA 98 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 + +P + + + SM+ GD +I+ G+ Sbjct: 99 VEEASDFFPIPPELQNESD------DLFMLRIKGDSMINAGIFDGDSVIVRKQSTAANGE 152 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K + L N + + +++ Sbjct: 153 IVIAMTEEDTATCKRFY-LEKDHVRLEPENDTMEPIILPN--CTILGKVV 199 >gi|187776409|ref|ZP_02802465.2| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188025234|ref|ZP_02776939.2| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|189010761|ref|ZP_02809209.2| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189402468|ref|ZP_02782667.2| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189403410|ref|ZP_02795288.2| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189404368|ref|ZP_02788860.2| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189406229|ref|ZP_02827125.2| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208810492|ref|ZP_03252368.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208816709|ref|ZP_03257829.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208819596|ref|ZP_03259916.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209400359|ref|YP_002271137.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217329536|ref|ZP_03445615.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] gi|187767281|gb|EDU31125.1| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188014100|gb|EDU52222.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188998604|gb|EDU67590.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355391|gb|EDU73810.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189360762|gb|EDU79181.1| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189366046|gb|EDU84462.1| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189375816|gb|EDU94232.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208725008|gb|EDZ74715.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208731052|gb|EDZ79741.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208739719|gb|EDZ87401.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209161759|gb|ACI39192.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217317304|gb|EEC25733.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] Length = 219 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 64/215 (29%), Gaps = 15/215 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + R+ + LT L + +G+ + ++ E P ++++ K Sbjct: 1 MQEKMMESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A T LL S + + + Y + F T + + Sbjct: 56 LAQALGTTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITT 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----P 175 + ++ + S P G +IL G + + Sbjct: 116 FFDVEEGDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLK 171 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 + K L+ G+ + L LN Y + Sbjct: 172 NEPSMTIKKLV-IDGKLVYLSPLNPRYQSSLLTPE 205 >gi|237746102|ref|ZP_04576582.1| phage repressor [Oxalobacter formigenes HOxBLS] gi|229377453|gb|EEO27544.1| phage repressor [Oxalobacter formigenes HOxBLS] Length = 227 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 22/224 (9%) Query: 6 HKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 H+++ + ++ S LAR + P + + + R S + + K Sbjct: 2 HEQMKRLYEAARMLKRVSGQSELARLFNVSPQTIHNWQ-------VRGISKQGMLKAQEM 54 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + L + F + + + + Sbjct: 55 VGCSALWLETGAG-----PMSLGNFQSVSTFWGDVNQIPLITAEQAARVNCASRNLSIYH 109 Query: 125 SPHNGIY---AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P ++ + + +M+P + KGD +I++ AI GD ++ K V Sbjct: 110 KPLKWLFTHAPLSAHSFALEITGLAMMPEFEKGDWVIVDPAIAPEPGDFVVAKYGDKMNV 169 Query: 182 AKVLISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +G +L++LN YP + +E I ++ Sbjct: 170 ILRKYRPKGLDLSHTMLFELIALNDDYPRIRSHLDAVEIIGTMV 213 >gi|330958867|gb|EGH59127.1| repressor protein c2 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 220 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 25/216 (11%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 ++ + LAR G+ S N + G+ + +++ L + Sbjct: 7 VSQAALARACGVTAPSVNDW----VSGKTKTIEGQNLLLAADFLQVAPLWLATGKGRMRK 62 Query: 82 TTEKKEKEIP-------LLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRSPHNGI-- 130 T E + + W V P S Sbjct: 63 TDTADEDSSQFSGEQSNVEMAEQPTRMYRYPVVSEVAAGAWAEVVEPYPNGYSDRYEATD 122 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 Y + + SM +G ++++++ ++ G ++ P + D+ K L Sbjct: 123 YKAKGPAFWLEVVGDSMTAPSGTSVPEGMLILVDTGVEARPGKLVVAKLPSSNDVTFKKL 182 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218 I + L LN Y + D + I R+ Sbjct: 183 I-DDAGQLYLKPLNPGYSMIKCT-DDCKIIGVAVRV 216 >gi|332799283|ref|YP_004460782.1| SOS-response transcriptional repressor, LexA [Tepidanaerobacter sp. Re1] gi|332697018|gb|AEE91475.1| SOS-response transcriptional repressor, LexA [Tepidanaerobacter sp. Re1] Length = 202 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 56/224 (25%), Gaps = 40/224 (17%) Query: 4 FSH--KKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWPSTE 56 +H K+I + I + PS + L T + + E R P Sbjct: 5 LTHRQKQILDYIHNYFKTKGYPPSVREICVATNLKSTATVHSYLVQLEEKGYIKRDPQKP 64 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +I+ + P + N N Sbjct: 65 RAIEIMD---------------------TGIVIDKDVIQIPLVGKVTAGEPILAQENIEN 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 P+ P + SM GD +++ S GD ++ Sbjct: 104 VFAFPKEMLP-------DANIFMLAVKGDSMIEAGILNGDYVMVQSTNTAKNGDIVVAL- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N V+ D++ + +++ Sbjct: 156 LEDEATIKRFYKETD-HIRLQPENRFMEPIIVK--DLKILGKVV 196 >gi|315930359|gb|EFV09439.1| peptidase S24-like family protein [Campylobacter jejuni subsp. jejuni 305] Length = 222 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 22/222 (9%) Query: 1 MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + I + D +A +L +A++ G++P +FN K I Sbjct: 14 MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGINPDTFNSMKFRNSIPYP------QI 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L N +I + + + +I LY + GG G + + Sbjct: 66 LNFLNERNISINYFFYGVSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 116 Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 E+ + + + SM PL + G I +++ + Sbjct: 117 DCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I ++ Sbjct: 176 DGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 216 >gi|110638280|ref|YP_678489.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110280961|gb|ABG59147.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 259 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 15/221 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ T LA++ G+ + + E + + ++ T + Sbjct: 4 ISENVKYFRKQLGFTQEQLAQRIGIKRSLLGAYEEGRAEPGLETLTI--LARLFETTVDA 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF----PPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + K+ E L + Sbjct: 62 LISETLSDPGKRKEAMSKDIEGKKLRVLAITVDKDDKENIQLVPEKAAAGYLNGYADPEY 121 Query: 125 SPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRT 177 + + + + SMLPL I+ +++ V ++ T Sbjct: 122 VAELPQFYLPIFSGSGTYRAFEIKGDSMLPLASGSLIIGQYVDNWSSVKDQQTYILVTAT 181 Query: 178 GDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 IV K + ++ ++ L+S N Y + + ++ I Sbjct: 182 EGIVYKRIYNNIKKNETLKLVSDNPAYEPYDIHVENVIEIW 222 >gi|21231174|ref|NP_637091.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|25453091|sp|Q8P9X2|LEXA2_XANCP RecName: Full=LexA repressor 2 gi|21112814|gb|AAM41015.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 213 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I E + + + +AR G + E++ + Sbjct: 6 TQQAILALIAERIETDGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A E P+ + P G + Sbjct: 54 AIRRVPGQARGIRLAGAAAHARAAPAEEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|114566341|ref|YP_753495.1| hypothetical protein Swol_0803 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337276|gb|ABI68124.1| hypothetical protein Swol_0803 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 255 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 64/250 (25%), Gaps = 42/250 (16%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-----------------------IE 47 E + + L+ L++K G+ + +R Sbjct: 5 ERLQYLRLEKELSEIQLSKKVGISESVIRLYERGKLRIDLEHLHKLAAFFDVTPGLLLGT 64 Query: 48 GRNRWPSTESIF------KILAATNETICQLLDLP-----------FSDGRTTEKKEKEI 90 P E++ K+L NE D P S+ + ++ Sbjct: 65 AFPHLPPEEALESYRVVNKLLEIRNEERKDEEDSPLFIDTLAQLAAESNKSDNKASNRQA 124 Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + + + P + + + M P Sbjct: 125 TIRAGVVAVYHKIVSAHSEANQEFIEDY-WPVNTTVMQIYGHDISNYFYLRVHGDFMEPT 183 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 + I++ +QV+ D ++ K L I L+ N +P E Sbjct: 184 IKNQSIVLAKRQVQVDNNDLAVVLYEQSPAAVKRLNRYED-KIILLCDNKAHPAQICEQE 242 Query: 211 DIEWIARILW 220 + ++LW Sbjct: 243 KCIILGKVLW 252 >gi|229591048|ref|YP_002873167.1| LexA repressor [Pseudomonas fluorescens SBW25] gi|229362914|emb|CAY49826.1| SOS regulatory protein [Pseudomonas fluorescens SBW25] Length = 202 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 60/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT+ + ++ I I + PS +A G S + Sbjct: 1 MTTLTPRRTAILTFIRDRIAQQGQPPSLAEIAEAFGFASRSVAR--------------KH 46 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + A E + + ++P+L +G P G Sbjct: 47 VLALTEAGFIEVNPNQARGIRLLNQPARPEWLDVPVLGRVAAG---------LPIGA--- 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 V +A + Q SM GD++ + + + G ++ + Sbjct: 95 DAEVHSRLQLDPSTFAKTPD-YLLRVQGDSMIEDGILDGDLVGVRRSAEALNGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K G S+ L+ N Y V Sbjct: 154 D-GEVTIKRFER-SGDSVRLLPRNPAYQPIVVGPDQ 187 >gi|6900347|emb|CAB71959.1| putative regulatory protein [Neisseria meningitidis] Length = 249 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 73/242 (30%), Gaps = 31/242 (12%) Query: 4 FSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S + I + ++R+ N P+ K + + F++ + G P+ + + KI Sbjct: 10 LSKRTIMDFLERLKSLWPDNAKPADFYNKIDMSASGFSRVWKDGAI-----PTADYLIKI 64 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFP 110 T + LL S + + Sbjct: 65 QEVTGCDLNWLLTGQGSPYMNKGQAVEVRTHTDGTATDTLGNPINLDEFVFIPRYDVYAA 124 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAI 163 G+ + + Y I+ + + + SM + GD +++N A Sbjct: 125 AGHGYPAEDDKPLFCMAFRRYWIENYVTRQLDKLSVIAVKGDSMEGVLNHGDNILVNHAE 184 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARIL 219 D L + + K + + + S N Y ++++D + I R+ Sbjct: 185 T-TPRDGLYVIRIDNHLFVKQIQKLP-GKLLVKSANPVYEPFEIDLTDDNQNVAIIGRVE 242 Query: 220 WA 221 W Sbjct: 243 WY 244 >gi|320354556|ref|YP_004195895.1| putative phage repressor [Desulfobulbus propionicus DSM 2032] gi|320123058|gb|ADW18604.1| putative phage repressor [Desulfobulbus propionicus DSM 2032] Length = 248 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 38/231 (16%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 L+ + + ++ + + P ++ + I+ N LL R Sbjct: 14 LSQKEFSDVCKVGISTLRRYESGVNP-----PDSDFLCAIVDNYNINPMWLLSGEGPMYR 68 Query: 82 TTEKKEKE----------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNGI 130 + P ++ + + S G Sbjct: 69 ERNTDPHGASTNSTSAKIPQRPVYMDDSGQVVIPQWQNPDPEMFDYIPMAETQLSAGGGA 128 Query: 131 YAIQ---------------------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + I + SM P ++ D ++++ + Sbjct: 129 FVISEEIEGYYAFRKSWLSRVASSTKNLVLMRVLGDSMSPTIQEDDTVMIDIGKRSIKEG 188 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARIL 219 + ++ K L R G I ++S N Y +M ++ I +I+ Sbjct: 189 MIYAIRFDSTVMIKRLAFRPGGRIMIISDNRHEYEPYEADMRELHIIGQII 239 >gi|71907568|ref|YP_285155.1| LexA repressor [Dechloromonas aromatica RCB] gi|123733237|sp|Q47EP6|LEXA_DECAR RecName: Full=LexA repressor gi|71847189|gb|AAZ46685.1| SOS-response transcriptional repressor, LexA [Dechloromonas aromatica RCB] Length = 201 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 G G G+ V + R + D K + SM+ + GD+L ++ Sbjct: 72 GLPLIGSVAAGSPILAVENMQGRYALDASLFAPKADFLLKVRGLSMIDVGIFDGDLLAVH 131 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 Q G ++ + ++ K L G I L++ N + V+ ++ Sbjct: 132 KTNQARDGQIVVARLD-EEVTVKRLER-SGGQIRLIAENPDFEPIIVDPEAVD 182 >gi|291528881|emb|CBK94467.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale M104/1] Length = 204 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 47/216 (21%), Gaps = 27/216 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K+I E I PS ST S+ L Sbjct: 9 KQKEILEFIKSEILNRGYPPS------------VRDICEGV-----HLKSTSSVHAHLET 51 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 D + + G G V E Sbjct: 52 LERKGYIRRDPAKNRAIEIIDDSFGLQRREMVNVPLVG-----RVAAGEPILAVENIETY 106 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 P Y Q K + SM+ GD +++ + GD ++ K Sbjct: 107 FPVPAEYMPNKQSFMLKVKGESMINAGIFDGDNILVEQQSDASNGDMVVALID-DSATVK 165 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I L N V D E + ++ Sbjct: 166 TFYK-ENGHIRLQPENDTMDPIIVP--DCEILGKVF 198 >gi|237798801|ref|ZP_04587262.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021654|gb|EGI01711.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 217 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 22/222 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I +AI + +A G+ ++ + + E+++ + Sbjct: 1 MTRQERIAKAIAA----SGMRKGEIAAYCGVANSAVTQWISGES----KSLRPENLYALS 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121 AT L + + I + G+ V P Sbjct: 53 RATGFRAEWLAIGEGPEKEEFDANVAMIDQPKMS----FRYPVISWVSAGSWEEAVQPYP 108 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 109 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 168 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 P + + K L+ G L LN Y + D I Sbjct: 169 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 208 >gi|153820436|ref|ZP_01973103.1| repressor protein C2 [Vibrio cholerae NCTC 8457] gi|126509021|gb|EAZ71615.1| repressor protein C2 [Vibrio cholerae NCTC 8457] Length = 199 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 12/196 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + +T + LA + ++ G NR PS E I ++ L Sbjct: 9 VKARMKDNGITQAVLAERLDKSQSAIAHWL-----GGNRKPSIEEIAAMMKIVGLDHVTL 63 Query: 73 LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + EI + Sbjct: 64 NSDGLVEYPDEAWANISRPQIQPSYQKSFPVLSSVQAGMWSEAIEPYTAEEINEWYETTE 123 Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186 + + + SM + +G ++++++ G ++ + K L+ Sbjct: 124 RTSERCFWLRVEGDSMTSGVGVSFPEGTLVLVDTERDHQNGSLVVAKLTDVNEATFKKLV 183 Query: 187 SRRGRSIDLMSLNCCY 202 G+ L LN Y Sbjct: 184 IDAGQKY-LKPLNPSY 198 >gi|46581090|ref|YP_011898.1| S24 family peptidase [Desulfovibrio vulgaris str. Hildenborough] gi|46450511|gb|AAS97158.1| peptidase, S24 family [Desulfovibrio vulgaris str. Hildenborough] gi|311234768|gb|ADP87622.1| putative phage repressor [Desulfovibrio vulgaris RCH1] Length = 260 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 67/248 (27%), Gaps = 38/248 (15%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFG------------------------ 45 ++R+ S LAR G+ P S + +++ G Sbjct: 9 AVLERLMVASGAKNDSDLARILGITPQSVSGARKRGEVPPVWIQSFAEKTGISSDWLFFG 68 Query: 46 --IEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 E P + + + + K + Sbjct: 69 RQPEAVAMEPVRVGMLRAGDPIARVVTKSESAQEEMTPPLAHAGKAHVIECDDCEIMMLP 128 Query: 104 FDSGVFPTGNK-WNTVGVPEIRSPHNGIYAI----QTQDTRHKTQDTSMLPLYRKGDILI 158 GN + T E R + + + + SM P GD+++ Sbjct: 129 MVEARLSAGNGSFETGANIERRYAFRTDFLLRKGQPSHMVLMRVDGDSMEPNIMNGDVVL 188 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-----SDIE 213 ++ + + ++ + K++ I L S N YP ++ + I Sbjct: 189 IDQSQRDPRAGKVYAVGVEDVVYLKMVN-AAPGKIVLSSYNAVYPPLEIDARGDLSNGIR 247 Query: 214 WIARILWA 221 I R +W Sbjct: 248 IIGRAVWV 255 >gi|240144156|ref|ZP_04742757.1| repressor LexA [Roseburia intestinalis L1-82] gi|257203859|gb|EEV02144.1| repressor LexA [Roseburia intestinalis L1-82] gi|291536196|emb|CBL09308.1| SOS-response transcriptional repressor, LexA [Roseburia intestinalis M50/1] gi|291538941|emb|CBL12052.1| SOS-response transcriptional repressor, LexA [Roseburia intestinalis XB6B4] Length = 205 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 50/218 (22%), Gaps = 31/218 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I E I + P+ + L TS S S + L Sbjct: 9 KQREILEYIKQEILNKGYPPAVREICEAVHLKSTS----------------SVHSHLETL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P G G V E Sbjct: 53 EKNGYIRRDPTKPRAIEIIDDNFNLTRREVVNVP--------IIGQVAAGQPLLAVENIE 104 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P + + K + SM+ GD +++ GD ++ Sbjct: 105 NYFPIPTEFMPNAETFMLKVKGDSMINAGIFNGDKILVQKQSDAQNGDIVVALVD-DSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V ++ + ++ Sbjct: 164 VKTFYK-EDGHFRLQPENDTMDPIIV--NECSILGKVF 198 >gi|238788598|ref|ZP_04632390.1| Prophage repressor protein [Yersinia frederiksenii ATCC 33641] gi|238723193|gb|EEQ14841.1| Prophage repressor protein [Yersinia frederiksenii ATCC 33641] Length = 240 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 71/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + + + ++ +A + G+ ++ N+ + Sbjct: 4 KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + K+L + L + + + S + + GN Sbjct: 62 AAFAKVLNEPISSFSPSLAKELAKMAESLSISTRSGLNDKPAGSVANSYPLISWISAGNW 121 Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167 + + + +I + SM + +G I++++ + Sbjct: 122 YEAIEPYTLRDIEIWPESTKNAHDNAFWLSVKGDSMTSPSGISFPEGMIILVDPEKEPMP 181 Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + K LI G L LN Y + + + + + ++ Sbjct: 182 GNFVVAKLTDDNEATFKKLIVDAGVKY-LKPLNPAYRLIELNGN-CKILGVVV 232 >gi|308198487|pdb|3K2Z|A Chain A, Crystal Structure Of A Lexa Protein From Thermotoga Maritima gi|308198488|pdb|3K2Z|B Chain B, Crystal Structure Of A Lexa Protein From Thermotoga Maritima Length = 196 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 54/217 (24%), Gaps = 36/217 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +K+ I+ E++ PS +AR+ + P R Sbjct: 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA------------------ 41 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + P + + +PE Sbjct: 42 LLHLIALEKKGYIERKNGKPRALRISKSIRNKIPLIGEIRAGEKREAIEYLEDYIEIPES 101 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 K + SM GD++++ GD + +A Sbjct: 102 FLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVAAMVDGEVTLA 155 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G +++L N ++ + +++ Sbjct: 156 KFYQR--GDTVELRPANREMSSMFFRAEKVKILGKVV 190 >gi|219870788|ref|YP_002475163.1| putative prophage repressor CI, XRE family transcriptional regulator/SOS-response transcriptional repressors (RecA-mediated autopeptidases)/ LexA family repressor/S24 family protease [Haemophilus parasuis SH0165] gi|219690992|gb|ACL32215.1| putative prophage repressor CI, XRE family transcriptional regulator/SOS-response transcriptional repressors (RecA-mediated autopeptidases)/ LexA family repressor/S24 family protease [Haemophilus parasuis SH0165] Length = 175 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 23/176 (13%) Query: 53 PSTESIFKILAATN------ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 P+ + +++ T + D + T+ KK + PL+ +G Sbjct: 2 PNVNEVAQMINLTGVNKVILNGDGTIEDFDPNITPTSVKKSRAYPLVSSIQAGMWTETYD 61 Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 G ++ + P + SM P + +GD+++++ + + Sbjct: 62 FRDSEG--YDYIDTEIDAGP---------DAFFLRVSGMSMEPKFSEGDLVLIDIRKRPH 110 Query: 167 CGDRLLIKPRTGDIVAKVLISR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 GD + G+ K +L+ LN +P + DI I Sbjct: 111 PGDFVAAVNGNGEATLKRYRELGELSPSGNPHFELVPLNQDFPTLSSMKQDIRIIG 166 >gi|94988646|ref|YP_596747.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94542154|gb|ABF32203.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] Length = 232 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 58/223 (26%), Gaps = 15/223 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + +T S L R ++ + + ++ + + + + Sbjct: 4 GHQLKTVRLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L P++ + K++ + + + + Sbjct: 64 NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 Y D SM P Y G+++++ G + Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224 >gi|46580084|ref|YP_010892.1| transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46449500|gb|AAS96151.1| transcriptional regulator, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 204 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 13/192 (6%) Query: 32 GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 G++ ++ ++K + I ++ A + L + Sbjct: 17 GVNRSAVTQAKNRDAIPQK------WILQLARAYHLAPDWLEFGKGRQHQPPTSLHDPET 70 Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 +L + +G + G SM P Sbjct: 71 VLVPRVKAVLSAGGGSLDVSGGVVENLPFRYDWLARRGH---PAHMVLMNVTGDSMEPGI 127 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 R GD L+++ + + I+ K +I L+S N Y + + Sbjct: 128 RHGDTLLIDQSHVTAQTGGVYAFGYEDSILVKRFGRD-ADAILLLSDNTAYAPIRIRGDE 186 Query: 212 ---IEWIARILW 220 + I +I+W Sbjct: 187 ADLLHVIGKIVW 198 >gi|306827322|ref|ZP_07460609.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] gi|304430469|gb|EFM33491.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] Length = 232 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 58/223 (26%), Gaps = 15/223 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + +T S L R ++ + + ++ + + + + Sbjct: 4 GHQLKTVRLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L P++ + K++ + + + + Sbjct: 64 NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 Y D SM P Y G+I+++ G + Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEIVLIKQNSFDYDG-AIYAVEWD 182 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224 >gi|225028634|ref|ZP_03717826.1| hypothetical protein EUBHAL_02913 [Eubacterium hallii DSM 3353] gi|224954044|gb|EEG35253.1| hypothetical protein EUBHAL_02913 [Eubacterium hallii DSM 3353] Length = 221 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 53/222 (23%), Gaps = 36/222 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 K+I E I + H P+ + L TS + + G R PS Sbjct: 22 KQKEILEYIKQSILSHGYPPAVREICEAVHLKSTSSVHSHLETLEKNGYIRRDPSKPRAI 81 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ G G + Sbjct: 82 EIID---------------------------DNFNLTRRELVNVPIVGTVTAGEPILAIE 114 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + P + Q K + SM+ GD +++ + D ++ Sbjct: 115 NIQGYFPIMPEFVNNKQTFMLKVKGESMINAGIFDGDFILVEETPTASDNDIIVAL-LED 173 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + K I L N V + R++ Sbjct: 174 SVTVKRFFKEED-HIRLQPENDTMEPIIVPQDSPFSIVGRVI 214 >gi|77459374|ref|YP_348881.1| LexA repressor [Pseudomonas fluorescens Pf0-1] gi|77383377|gb|ABA74890.1| SOS regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 205 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT+ + ++ I I H PS ++ G S + Sbjct: 4 MTTLTPRRTAILTFIRERIAEHGQPPSLAEISEAFGFASRSVAR--------------KH 49 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + A E G+ + E+P+L +G+ P G + Sbjct: 50 VLALTEAGFIEVNPHQARGIRLLGQPARPELLEVPVLGRVAAGA---------PIGADAD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 R + +T D + Q SM GD++ + + G ++ + Sbjct: 101 LH----NRLMLDPALFSRTPDYMLRVQGDSMIEDGILDGDLVGVRRNPEALNGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K G ++ L+ N Y V Sbjct: 157 D-GEVTIKRFERV-GDAVRLLPRNPAYQPIVVRADQ 190 >gi|291166068|gb|EFE28114.1| LexA repressor [Filifactor alocis ATCC 35896] Length = 213 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 24/207 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I+ + N+T L+ + G + + R P+ ++ I Sbjct: 6 NVGKTIENILCEKNMTNRELSYRIGDTEVIIGRYIKGT-----REPNATNLSNIADVLGV 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + LL R ++ G V Sbjct: 61 STDYLLGYSQEAKRKGVSIPILGKVV-----------------AGIPIEAVEEILDYEEI 103 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 A K Q SM P +GDI+I+ V G+ ++ D K +I Sbjct: 104 TPELARTGTFFALKIQGESMEPKLFEGDIVIIRQQNNVENGEIAVVLVNRQDATVKQIIK 163 Query: 188 RRGRSIDLMSLNCC-YPVDTVEMSDIE 213 I L N Y IE Sbjct: 164 HDNG-IFLNGFNPIVYTPQFYTDDQIE 189 >gi|302341551|ref|YP_003806080.1| phage repressor [Desulfarculus baarsii DSM 2075] gi|301638164|gb|ADK83486.1| putative phage repressor [Desulfarculus baarsii DSM 2075] Length = 252 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 62/238 (26%), Gaps = 29/238 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + ++ L+ A G+ + ++ +R + S Sbjct: 13 EIGGRFREIRKQLGLSQQEFASVLGVTQATASRIERGEVSATVEALSGLLCAYPDLDVGY 72 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------ 121 +C S + I + + + + VP Sbjct: 73 ILCGNTSAIQSPCPDALEVAANICPVIRTMNSDLSDVQQENVA----DDYLAVPLLEGKA 128 Query: 122 -------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + SM P G I+I++ + G Sbjct: 129 AAGAGGVTWNQVKSLVWVYKPELGQRRNCVALRVWGDSMEPTIPDGSIVIVDLDQREPDG 188 Query: 169 DR-LLI--KPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIE--WIARILW 220 + + GD + K L ++S N Y V D I R++W Sbjct: 189 RGEHVWALRTEDGDTIIKRLRQTPQGVWVIISDNSMSYGPSIVWTGDFHRLVIGRVIW 246 >gi|170025321|ref|YP_001721826.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169751855|gb|ACA69373.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] Length = 240 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 22/233 (9%) Query: 2 TSFSHKKI--WEAIDRMAERH----NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + + E +T +A G+ + + Sbjct: 5 KELTTEQLEDAKRLKALYESKKKTLGITQYTIADDLGISQGAVGHYLNGRN-----ALNA 59 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 A +I + E P + + F + Sbjct: 60 PIASVFAKALQVSISDFSPSIAREVSGYAASNTEDPQRPVILAYTYPLFSTVQAGAFAAV 119 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGD 169 + + + + + SM P + +G +++++ V GD Sbjct: 120 GSYTEKDAKDWISTTKKASDSAFWLEVSGHSMTAPQGVKPSFPEGMLILVDPQENVKYGD 179 Query: 170 RLLIKPRTG-DIVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARIL 219 + ++ K + G L L N Y + + I +++ Sbjct: 180 FCVAGTHNDTEVTFKKFVWDDGYR-WLEPLNNNPRYQSILFD-DNCRIIGKVV 230 >gi|325287801|ref|YP_004263591.1| phage repressor like transcriptional regulator, XRE family [Cellulophaga lytica DSM 7489] gi|324323255|gb|ADY30720.1| phage repressor like transcriptional regulator, XRE family [Cellulophaga lytica DSM 7489] Length = 201 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 20/212 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + E + + LA K G N + R PS E +++I Sbjct: 1 MNRIKYVLEDKGIKQTWLAEKLGKSYNMVNSYVQN-----RRQPSLELLYEIAHILQVEA 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LLD + T + + + S + G +F + + V Sbjct: 56 RDLLDGNQAVFNTNNTVKTDTVSIPLVGSVACGLP---IFAEEHIEAKIEVSTKLVKK-- 110 Query: 130 IYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM GD+L++ GD +L + K I Sbjct: 111 ----PSDYFLLRATGDSMNKKGINSGDLLLIKRQHTAETGDLVLALLD-NEATVKEFI-N 164 Query: 189 RGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218 G ++ L N + + +D + + Sbjct: 165 NGSNLVLKPHSTNPKHQPIILT-TDFKVQGVV 195 >gi|238924063|ref|YP_002937579.1| transcriptional repressor, LexA family [Eubacterium rectale ATCC 33656] gi|238875738|gb|ACR75445.1| transcriptional repressor, LexA family [Eubacterium rectale ATCC 33656] Length = 209 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 47/216 (21%), Gaps = 27/216 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K+I E I PS ST S+ L Sbjct: 14 KQKEILEFIKSEILNRGYPPS------------VRDICEGV-----HLKSTSSVHAHLET 56 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 D + + G G V E Sbjct: 57 LERKGYIRRDPAKNRAIEIIDDSFGLQRREMVNVPLVG-----RVAAGEPILAVENIETY 111 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 P Y Q K + SM+ GD +++ + GD ++ K Sbjct: 112 FPVPAEYMPNKQSFMLKVKGESMINAGIFDGDNILVEQQSDASNGDMVVALID-DSATVK 170 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I L N V D E + ++ Sbjct: 171 TFYK-ENGHIRLQPENDTMDPIIVP--DCEILGKVF 203 >gi|291546183|emb|CBL19291.1| SOS-response transcriptional repressor, LexA [Ruminococcus sp. SR1/5] Length = 206 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 49/218 (22%), Gaps = 30/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I + + PS + L TS S S + L Sbjct: 9 KQQEILDYMKNEILNRGFPPSVREICEAVNLKSTS----------------SVHSHLEAL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P G G V + Sbjct: 53 EKNGYIRRDATKPRAIEIIDDNFNLVRREVVNVPLV--------GTVAAGQPILAVENID 104 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P Y Q + SM+ GD +++ GD ++ Sbjct: 105 AYFPIPAEYMPNEQSFMLTVKGDSMINAGIFDGDQVLVKQQATAENGDMVVALID-DSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + + ++ + ++ Sbjct: 164 VKTFYK-ENGYYRLQPENDNMEPIIITGN-LQILGKVF 199 >gi|39996717|ref|NP_952668.1| LexA repressor [Geobacter sulfurreducens PCA] gi|47605797|sp|P61609|LEXA2_GEOSL RecName: Full=LexA repressor 2 gi|39983598|gb|AAR34991.1| LexA repressor [Geobacter sulfurreducens PCA] gi|307634889|gb|ADI84452.2| LexA repressor [Geobacter sulfurreducens KN400] Length = 203 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 37/226 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + + + E I +RH P+ +AR ++ T Sbjct: 1 METLTSRQRTVLEFITAHVDRHGYPPTMREIARHLNVN-------------------GTL 41 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K L A + S G T + + P + P T Sbjct: 42 GVAKHLEALARKGYLQREPGNSRGITLTGQTRHTPTVSLP-VIGVVRAGVPQIATEEIEE 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + ++ + + SM+ +GD+ ++ D ++ Sbjct: 101 HISIDQSL--------VKGGAFFLRVKGDSMINAAIIEGDLALVRPQQTAENRDIVVAMI 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE--MSDIEWIARIL 219 G+ K + I L N V + + I +++ Sbjct: 153 D-GEATLKRFY-QGADHIRLQPENPNMAPIIVRSGVQEAWIIGKVV 196 >gi|261378025|ref|ZP_05982598.1| putative repressor protein [Neisseria cinerea ATCC 14685] gi|269145901|gb|EEZ72319.1| putative repressor protein [Neisseria cinerea ATCC 14685] Length = 228 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 21/212 (9%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL Sbjct: 18 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGEPFPGG 72 Query: 84 EK----KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134 + G + + + I+ Sbjct: 73 NQVKSVAYDTFGNEVDTDEFVFVPRYDIRAAAGYGQFVGHEEPVFTMAFRRHWIENYVTR 132 Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N +++ ++ K L G Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDTILVNHGENTPKDGLYVLRINEN-LLVKRLQIVPGGI 191 Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220 I+++S N YP + + D+E I R+ W Sbjct: 192 INVISANEAYPAFEINLNNLTDDVEIIGRVEW 223 >gi|120612236|ref|YP_971914.1| putative phage repressor [Acidovorax citrulli AAC00-1] gi|120590700|gb|ABM34140.1| putative phage repressor [Acidovorax citrulli AAC00-1] Length = 225 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 25/226 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++++A + + S +AR G P + + R S K Sbjct: 7 RLYQAASEIRDVAG--QSAVARLLGESPQNLKNWE-------VRGVSKAGALKAEELIGC 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------- 119 + +L R E + G V Sbjct: 58 SAAWVLTGDGPATRRGETTARPPSPESSVSVPQLA----NTASMGTGSEMVPEDVMVGHL 113 Query: 120 --VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P + SM P + GD+L++++ ++ D + + Sbjct: 114 TLSPAWIGRTLRGLSTPENLRFIHAYGDSMEPTFLDGDVLLVDAGVRTLEVDGIYVLAAQ 173 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARILWA 221 + K + R + ++ S N V +E + +++W Sbjct: 174 NRLFIKRVRQRLDGAYEISSDNPTVKTVDVLDGKHAVEILGKVIWI 219 >gi|157963808|ref|YP_001503842.1| LexA repressor [Shewanella pealeana ATCC 700345] gi|189046548|sp|A8H9S0|LEXA_SHEPA RecName: Full=LexA repressor gi|157848808|gb|ABV89307.1| transcriptional repressor, LexA family [Shewanella pealeana ATCC 700345] Length = 206 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +AR+ G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIADTGMPPTRAEIARRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA +E G G G Sbjct: 45 EHLKALAKKGCIEIMPGTSRGIKLTQESTEE-----------PDLGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + +GD+L ++ Q G ++ + Sbjct: 94 AQEHVEQHYKVDPAMFRPSADFLLRVRGDSMKNIGILEGDLLAVHKIEQARNGQIVVAR- 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L + N Y V+++ Sbjct: 153 VEDDVTVKRFEKK-GNKVFLHAENEDYSPIEVDLA 186 >gi|307251408|ref|ZP_07533323.1| Uncharacterized HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856576|gb|EFM88717.1| Uncharacterized HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 238 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 21/219 (9%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + E+ N S +R G+ TS N+ + PS ++ K A ++ L Sbjct: 19 LKEKFNGNNSEFSRAVGIAITSLNRWLIGEAD-----PSRSNLIKTAKAAGVSLEWLATG 73 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT------GNKWNTVGVPEIRSPHNG 129 S + + + S F G+ V P+ + P++ Sbjct: 74 KESQQQPQQGIVERAFERLKGFSDEMVSMVDSFFSINVSAGFGSFNEGVTKPDGQEPYSN 133 Query: 130 IYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + SM P GD ++++ + G+ + + + K Sbjct: 134 ELLQKLGVQAEYCGVFWARGRSMHPTISDGDQMLVSFKHKEVIGNNIYLVQNGDSVWVKR 193 Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARIL 219 + ++L+S N Y + + ++ I ++ Sbjct: 194 VKILWDG-VELISDNKDEYAPIKITADEAQNLQIIGQVF 231 >gi|291524798|emb|CBK90385.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale DSM 17629] Length = 204 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 47/216 (21%), Gaps = 27/216 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K+I E I PS ST S+ L Sbjct: 9 KQKEILEFIKSEILNRGYPPS------------VRDICEGV-----HLKSTSSVHAHLET 51 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 D + + G G V E Sbjct: 52 LERKGYIRRDPAKNRAIEIIDDSFGLQRREMVNVPLVG-----RVAAGEPILAVENIEAY 106 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 P Y Q K + SM+ GD +++ + GD ++ K Sbjct: 107 FPVPAEYMPNKQSFMLKVKGESMINAGIFDGDNILVEQQSDASNGDMVVALID-DSATVK 165 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I L N V D E + ++ Sbjct: 166 TFYK-ENGHIRLQPENDTMDPIIVP--DCEILGKVF 198 >gi|222086522|ref|YP_002545056.1| hypothetical protein Arad_3094 [Agrobacterium radiobacter K84] gi|221723970|gb|ACM27126.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 262 Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 62/254 (24%), Gaps = 41/254 (16%) Query: 6 HKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNR------------- 51 K + E + E N + + A G+ +++ + E Sbjct: 2 QKSMGERLKAAREAANYSSATKAAEALGVSLSTYRAHENGQNEFGPEIADRYAKKFGTTA 61 Query: 52 --WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + E K+ + + E E S G Sbjct: 62 GYLLTGEGPRKVERPGPRMVTSFDPDEQYNEGFAEDGENVSYSREHWQSKIEGATPEVDV 121 Query: 110 PTGNK---------------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 G V + N A + SM Sbjct: 122 KLGAGSGIVGEVINLPVGAGNVAGHKIIAEWVIPVGYLRNEAKASPNHTIIMEVIGDSMQ 181 Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRR---GRSIDLMSLNCCYPV 204 P Y GD +I++ + + D + + K L I ++S N Sbjct: 182 PTYMPGDRVIVDLSQNLMVTDTVYAISDGYSEPQIKRLQRIPFTQPSQIKIISDNPALET 241 Query: 205 DTVEMSDIEWIARI 218 TVE+ + I RI Sbjct: 242 FTVELERLTIIGRI 255 >gi|184157525|ref|YP_001845864.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332875425|ref|ZP_08443251.1| peptidase S24-like protein [Acinetobacter baumannii 6014059] gi|183209119|gb|ACC56517.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322507840|gb|ADX03294.1| putative transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323517440|gb|ADX91821.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332736361|gb|EGJ67362.1| peptidase S24-like protein [Acinetobacter baumannii 6014059] Length = 223 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 56/218 (25%), Gaps = 6/218 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNE 67 + + + + T + +A + ++ + P + Sbjct: 3 LKDRLKDSRIKAKRTQAEVAEAVKMSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTT 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRS 125 + T + F ++ + +P S Sbjct: 63 GNSEDSFRESDVFNPTVVSNDAADQYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPAS 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 Q K + SM + GD++ ++ + + G+ + K + Sbjct: 123 FFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMIKQI 182 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 S+ L SLN + V + + + R W Sbjct: 183 FKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220 >gi|227872378|ref|ZP_03990727.1| repressor lexA [Oribacterium sinus F0268] gi|227841777|gb|EEJ52058.1| repressor lexA [Oribacterium sinus F0268] Length = 235 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 22/227 (9%) Query: 4 FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWP 53 + K+ I+ I + N PS + + GL TS N ++ G+ + P Sbjct: 13 LTEKQLAIYNYIKECVQIRNYPPSVRDICTEVGLKSTSSVFSYLNDLEQAGLIRKDPSHP 72 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 I + + + T + E+ + + P + +F N Sbjct: 73 RAIEILDKSHSHSGKAPKSNKTKDISAIKTPEVEETMKEMVSVPVIGTVAAGTPIFAEEN 132 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + +P P+ + K + SM+ + GD L++ + G+ ++ Sbjct: 133 VSDHFPLPTEILPNQ-------ETFILKVKGDSMINVGIFDGDYLMVAKQNTCSDGEVVV 185 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V +D + + + + Sbjct: 186 AL-VEDSATVKRFYKEK-GYIRLQPENDTMEDIIV--NDCQILGKAI 228 >gi|225851071|ref|YP_002731305.1| repressor LexA [Persephonella marina EX-H1] gi|225645812|gb|ACO03998.1| repressor LexA [Persephonella marina EX-H1] Length = 206 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 67/222 (30%), Gaps = 34/222 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDP-TSFNKSKRFGIEGRNRWPSTES 57 M + K+I + I + ++ +P+ +A GL ++ + E Sbjct: 1 MLTKRQKEILQFIGQFYSQYGYSPTLKEIADYFGLSAVSTIH----------------EH 44 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I K++ + + + E++ + P +G + + Sbjct: 45 IEKLVKEGYLIRTGRGKIRINREKLFEEEPLKFPFYGHIAAGRPIEI------EQDIFEY 98 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176 V + + K + SM+ GDI+I+ + V G+ ++ Sbjct: 99 VDLTD--------LIQCDNCYALKVKGNSMIDEHIMDGDIIIVENRKDVLNGEVAVVLID 150 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + L+ N E I+ + Sbjct: 151 GEEATLKKFYLLDNGMVKLVPANEELEPMYYEADRIQVQGVV 192 >gi|329115182|ref|ZP_08243937.1| Transcriptional Regulator [Acetobacter pomorum DM001] gi|326695625|gb|EGE47311.1| Transcriptional Regulator [Acetobacter pomorum DM001] Length = 265 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 78/268 (29%), Gaps = 57/268 (21%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++R L+ LARKAG+ T R ++G++R P E + I A Sbjct: 1 MTRSPVADELERRMALLGLSQKALARKAGVGDTYV----RDILKGKSRNPGGEKLECIAA 56 Query: 64 ATNETICQLLDLPFSDGRT-----TEKKEKEIPLLYFPPSGSGGFFDSGVFPT------- 111 T LL + + P + + G Sbjct: 57 VLGCTARDLLFPGVDHTQPGLMLRERRTPYLPPPFTPATAPTRGRLHHSCASATRMAPPP 116 Query: 112 ---------GNKWNTVGVPEIRSPHNGIY----------------------AIQTQDTRH 140 + V R +G Y A Sbjct: 117 LSAPPPAPAPPGYVVVPFLAQRGTASGRYDEAQMLGSPKYFEESLITQRLNARAENLRAL 176 Query: 141 KTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKV-----LISRRGRSI 193 + +M PL R GD +++++ G +L G+ V + + Sbjct: 177 SVEGQAMEPLLRDGDTVLMDTRRTTMAEPGLFVLF---DGENVVCRWAERTFDPQGRPLV 233 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARILWA 221 + N + T+ S ++ + R++W Sbjct: 234 QISCENKRFSACTLPASRVQILGRVVWY 261 >gi|321157314|emb|CBW39296.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 228 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 60/220 (27%), Gaps = 15/220 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + +T +A + G+ +++ +R + + +IL Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSTWERGIKQPSREKIKL--LEQILNVPKGYFT 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLL----------YFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ + + + E K + + + + Sbjct: 63 EVEIVRLYNTLSDEGKNNALSYVRGLVQKEKCKNIVSMSEKLYEYHVYEQMSAGIGSPVY 122 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + D SM P Y+ G + ++ G + Sbjct: 123 NDQNYDTVYFDEELAHDFASWISGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQT 181 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + + + L+S+N Y + + + I+ Sbjct: 182 YIKRVY-QEEQGLRLVSINPKYRDIFLSYDEDPRIVGIIV 220 >gi|66768818|ref|YP_243580.1| LexA repressor [Xanthomonas campestris pv. campestris str. 8004] gi|188991933|ref|YP_001903943.1| LexA repressor [Xanthomonas campestris pv. campestris str. B100] gi|48474593|sp|Q93MQ9|LEXA_XANCA RecName: Full=LexA repressor gi|15150332|gb|AAK85397.1|AF399933_1 LexA [Xanthomonas campestris] gi|66574150|gb|AAY49560.1| LexA [Xanthomonas campestris pv. campestris str. 8004] gi|167733693|emb|CAP51898.1| LexA repressor [Xanthomonas campestris pv. campestris] Length = 213 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I E + + + +AR G + E++ + Sbjct: 6 TQQAILALIAERIETDGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A E P+ + P G + Sbjct: 54 AIRRVPGQARGIRLAGAAAHARAAPAEEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|332974608|gb|EGK11526.1| LexA family repressor/S24 family protease [Psychrobacter sp. 1501(2011)] Length = 212 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 66/216 (30%), Gaps = 21/216 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + L+ L K G+ T+ + + + + K+ + Sbjct: 2 QTLGQRLFNLRRSKKLSRDALGAKIGVSKTAIKNWEEDSN--FPKHEFIDGLSKVFGCSI 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + +P+L + +G + + V Sbjct: 60 GYLVDGIPDGDNFKILPMDNVRRVPVLNYVQAGEFCEYFDDAIA-----DMFEVIIGDY- 113 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVL 185 + SM P + GD+++++ Q + GD ++ K + K Sbjct: 114 -------PPHVHWVIIEGLSMTPDFNPGDLILVDPDTQPSPGDYVVAKKAGENAVTFKKW 166 Query: 186 ISRR--GRSI---DLMSLNCCYPVDTVEMSDIEWIA 216 R I +L+ LN +P+ + Sbjct: 167 RPRGFDDDGIEYCELVPLNPDFPIIDSRHTPFTICG 202 >gi|134295441|ref|YP_001119176.1| putative phage repressor [Burkholderia vietnamiensis G4] gi|134138598|gb|ABO54341.1| putative phage repressor [Burkholderia vietnamiensis G4] Length = 254 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 N ++A T + + S+ + D+++++ + +++ GD++ K L Sbjct: 153 ENYLHACPTDLSVLSVKGDSLQGILNDRDVILIDRSQTTGSAGLYVLRID-GDVIVKTLQ 211 Query: 187 SRRGRSIDLMSLNCCYPVDTV----EMSDIEWIARILWA 221 G + + S N Y V SD E I R++WA Sbjct: 212 RLPGGILKVSSANTAYEPFEVNMAQPPSDFEIIGRVVWA 250 >gi|294665633|ref|ZP_06730910.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604579|gb|EFF47953.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + +AR G + E++ Sbjct: 6 TQQAILALITERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEHAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G T + P G + Sbjct: 54 AIRRVPGQARGIRLAGQGAQTRTAPVSEAARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|295105867|emb|CBL03410.1| SOS-response transcriptional repressor, LexA [Gordonibacter pamelaeae 7-10-1-b] Length = 212 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 53/218 (24%), Gaps = 24/218 (11%) Query: 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K + + I+ T + + GL P++ + + E + K Sbjct: 9 QKAVLDCIEECIREKGYGPTVREVCQSLGLSSPSTVHVHLKALEEKG--------LIK-R 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 L + + + P S + N +T+ +P Sbjct: 60 DPLKSRSIALTYPLGDTESASNVVKPSFNKVVNVPLVGNVAAGSPILAEENITDTISLPT 119 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + SM GD +++ N GD ++ Sbjct: 120 DIVG-------DAPSFLLSVRGESMIEAGINDGDYVVVKEQPVANNGDIVVAIID-DGAT 171 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N +D +++ Sbjct: 172 VKRFYKESD-HIRLQPENSTMEPII--TTDCSIAGKVV 206 >gi|217077631|ref|YP_002335349.1| LexA repressor [Thermosipho africanus TCF52B] gi|226736106|sp|B7IDD1|LEXA_THEAB RecName: Full=LexA repressor gi|217037486|gb|ACJ76008.1| LexA repressor [Thermosipho africanus TCF52B] Length = 198 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 35/223 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M ++++ + + I +++ + PS I Sbjct: 1 MKELTNRQKMVLDFITSYIQQNGYS-----------------------------PSIRDI 31 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K T + G T + + + G G Sbjct: 32 AKHFKLTPRGAHIHVLALEKKGYITRNPKNSRSISLVKRPETVSIPVKGKISAGQGIEMF 91 Query: 119 GVPEIRSPHNGIYAIQ-TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + + + TSM GD +IL ++ G + Sbjct: 92 ELVDEEIEIPVRMINGYGNYFALRVEGTSMIEAHIIDGDYVILKKQYRIPNGQIAAVVFD 151 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + ++L+ N + D++ I +++ Sbjct: 152 -NKVTLKRFYHK-NDKVELVPENSSMSPIICDAKDVKVIGKLV 192 >gi|193071379|ref|ZP_03052295.1| putative repressor protein [Escherichia coli E110019] gi|192955295|gb|EDV85782.1| putative repressor protein [Escherichia coli E110019] Length = 219 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 64/215 (29%), Gaps = 15/215 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + R+ + LT L + +G+ + ++ E P ++++ K Sbjct: 1 MQEKMMESLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A T LL S + + + Y + F T + + Sbjct: 56 LAQALGTTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITT 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----P 175 + ++ + S P G +IL G + + Sbjct: 116 FFDVEEGDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLK 171 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 + K L+ G+ + L LN Y + Sbjct: 172 NEPSMTIKKLV-IDGKLVYLSPLNPRYQSSLLTPE 205 >gi|312792312|ref|YP_004025235.1| lexa repressor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179452|gb|ADQ39622.1| LexA repressor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 428 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 I + + K + SM + GDI I+ D ++ G+I K Sbjct: 333 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVI-AWLDGEITVKRFCKM 391 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ L+ N Y ++ ++ + +++ Sbjct: 392 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 421 >gi|289168204|ref|YP_003446473.1| cI-like repressor, S. pneumoniae bacteriophage EJ-1 [Streptococcus mitis B6] gi|288907771|emb|CBJ22608.1| cI-like repressor, S. pneumoniae bacteriophage EJ-1 [Streptococcus mitis B6] Length = 262 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 67/249 (26%), Gaps = 37/249 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN---------- 50 M FS ++ + N L+R G+ ++ + Sbjct: 16 MKVFS-----ANLNAILSDRNCKQVELSRATGIPASTLTGYVKGTSLPIPGNVQKIADHF 70 Query: 51 -------------------RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 P+ I I + +K E + Sbjct: 71 GVLKSTLDPRFASEDSSIEITPTASQIQSIYDQLAPPRQGKVLTYAERQLDEQKNEDKTK 130 Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 + + + + +IR + D + SM P Y Sbjct: 131 INEVSEKIVQLYGYDYYDHAASAGTGQYLNDIRVERIELPVDVDADFVIPIKGDSMEPDY 190 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS- 210 GD++ + +++ +N G + G+ K L+ +S L SLN Y + Sbjct: 191 HDGDLVFIQTSVDLNDGVIGV-FNYNGEAYIKQLVIDTEQSY-LHSLNPAYKDMPITPET 248 Query: 211 DIEWIARIL 219 D I ++ Sbjct: 249 DFRIIGEVV 257 >gi|311107150|ref|YP_003980003.1| LexA repressor [Achromobacter xylosoxidans A8] gi|310761839|gb|ADP17288.1| LexA repressor [Achromobacter xylosoxidans A8] Length = 216 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 59/210 (28%), Gaps = 24/210 (11%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62 ++I + I + R P + +A G R P+ E K L Sbjct: 9 QQQILDLIRQTVARTGFPPTRAEIALALGF-----------------RSPNAAEDHLKAL 51 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + + L P G G+ E Sbjct: 52 ARKGAIELTAGASRGIRLKDASPTSTQSALPM-PGLAQLLLPLVGRVAAGSPILAAEHVE 110 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + Q D K + SM +GD+L + A + G ++ + D+ Sbjct: 111 REVGVDPNLFAQAPDYLLKVRGMSMRDAGILEGDLLAVKKASEARNGQIVVAR-LGDDVT 169 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L + I+L+ N + VE Sbjct: 170 VKRLQRQ-NGHIELLPENPDFEPIVVEAGQ 198 >gi|153810904|ref|ZP_01963572.1| hypothetical protein RUMOBE_01288 [Ruminococcus obeum ATCC 29174] gi|149833300|gb|EDM88382.1| hypothetical protein RUMOBE_01288 [Ruminococcus obeum ATCC 29174] Length = 220 Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 50/218 (22%), Gaps = 30/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I + I P+ + L TS S S + L Sbjct: 18 KQQEILDYIKNEILNRGFPPAVREICEAVNLKSTS----------------SVHSHLEAL 61 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P + N VP Sbjct: 62 EKNGYIRRDATKPRAIEIIDDNFNLVRREVVNVP-LVGTVAAGQPMLAVENIEGYFPVPA 120 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 Y Q K + SM+ GD +++ + GD ++ Sbjct: 121 E-------YMPNAQSFMLKVKGDSMINAGIFDGDQVLVRQQSSASNGDIVVAL-VEDSAT 172 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V +++ + ++ Sbjct: 173 VKTFYK-EDGYYRLQPENDSMEPILVH-DNLKILGKVF 208 >gi|326571077|gb|EGE21101.1| peptidase S24-like protein [Moraxella catarrhalis BC7] Length = 240 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 66/224 (29%), Gaps = 16/224 (7%) Query: 13 IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 ++++ + L + + +A++ L+ + ++ + R S S+ K L ++ Sbjct: 14 LEKIEKEKGLNSFAKIAKEYDLNASYLSQLMNGNRQIGER--SARSLEKKLKLEKFSLDN 71 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN--- 128 + E + F+ F G+ P Sbjct: 72 CPLQSNINPDFESITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGR 131 Query: 129 ----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + D SM P + GD + ++ + R+ + K Sbjct: 132 RTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKR 191 Query: 185 LISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 L + ++S N +P + + E I + S Sbjct: 192 LYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 235 >gi|171914342|ref|ZP_02929812.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136] Length = 286 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 60/213 (28%), Gaps = 9/213 (4%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 E T L++ G + GR +I L E + Q Sbjct: 68 RDAREAKGWTIRDLSKATGYAVGVLQAME--EASGRASEKMINAISTALGIPVEDLMQGS 125 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 D P T P G+ + + + G A+ Sbjct: 126 DAPKIIDETGRTGTMGAIPNLQVPPGTTARIIPHLSFAQAGKMEACWEDGGYEYEGRVAL 185 Query: 134 ---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLI-- 186 + + + SM GD +++ + + G +L + G V L Sbjct: 186 NVKDPKAFTVEIRGDSMEDKISPGDTIMVYPSKEPRNGSVVLARLTDDAGGDVFCKLYTA 245 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +G+ + L S N YP D +I ++ Sbjct: 246 KNQGKEVLLTSFNPAYPPMEYRREDFRFIYPVV 278 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 6/106 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + R LT A K L + + R PS ES+ +L + Sbjct: 5 ERLKALRTRLGLTQRDFAEKLKLSVGYVYQLEAG-----KRAPS-ESLLVLLDLIEKEAA 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 E K I L + G + +G Sbjct: 59 ATPSPRSKMRDAREAKGWTIRDLSKATGYAVGVLQAMEEASGRASE 104 >gi|332519441|ref|ZP_08395908.1| Peptidase S24/S26A/S26B, conserved region [Lacinutrix algicola 5H-3-7-4] gi|332045289|gb|EGI81482.1| Peptidase S24/S26A/S26B, conserved region [Lacinutrix algicola 5H-3-7-4] Length = 270 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 18/229 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG----RNRWPSTESIFKILA 63 I E I + NL +++ G+ T+ + + + P + + I+ Sbjct: 3 DIAEKITAIINHFNLNNYAFSKRIGVTGTTIDSIVNGRPQNDGSRKKTKPGYDVLKAIID 62 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTG------NKWN 116 + L + ++ K + + + + P + + Sbjct: 63 EFDINPDYLFGKSHTMLKSETPKIQTYTGVPQVIAVNNNDQENVIYVPVKARAGYLDGYG 122 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLI 173 E + Q SML + GD++ + + + G +I Sbjct: 123 DTEYIEKLPSFYMPQLTNGTFRCFEVQGNSMLRTFYDGDLVFGKYVENLNDIKDGHVYVI 182 Query: 174 KPRTGDIVAKVL--ISRRGRSIDLMSLNCC--YPVDTVEMSDIEWIARI 218 + IV K + ++ + L S N YP + +I + + Sbjct: 183 VSKNDGIVLKRILKQIKQDNKLVLKSDNKDGNYPDYNINTEEIMEVWYV 231 >gi|293606137|ref|ZP_06688502.1| LexA repressor [Achromobacter piechaudii ATCC 43553] gi|292815592|gb|EFF74708.1| LexA repressor [Achromobacter piechaudii ATCC 43553] Length = 230 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 60/210 (28%), Gaps = 25/210 (11%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62 ++I + I + R P + +A+ G R P+ E K L Sbjct: 24 QQQILDLIRQTVTRTGFPPTRAEIAQALGF-----------------RSPNAAEDHLKAL 66 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A +L R + P G G+ E Sbjct: 67 ARKG--AIELTAGASRGIRLKDNPTTSPTSSAIPSLAQLLLPLVGRVAAGSPILAAEHVE 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + Q D K + SM +GD+L + A + G ++ + D+ Sbjct: 125 REVGVDPHLFAQAPDYLLKVRGMSMRDAGILEGDLLAVKKASEARNGQIVVAR-LGDDVT 183 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L I+L+ N + VE Sbjct: 184 VKRLQR-TNGHIELLPENPDFQTIVVEADQ 212 >gi|110803786|ref|YP_698499.1| LexA repressor [Clostridium perfringens SM101] gi|123146159|sp|Q0STQ8|LEXA_CLOPS RecName: Full=LexA repressor gi|110684287|gb|ABG87657.1| LexA repressor [Clostridium perfringens SM101] Length = 203 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 59/221 (26%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59 +I+ + + PS + + L TS KR +G R P+ Sbjct: 9 KQTQIYNFLIEFTKSKGYPPSVREICQAVSLKSTSTVHGHLKRLEKKGLIYRDPTKPRAL 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ +N E L P + T N + Sbjct: 69 EIVELSN----------------------EEKELIDIPIVGKVTAGMPILATENIEDMFQ 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P HN K SM GD+ I+ GD ++ Sbjct: 107 IPINYVKHNN------DLFILKVTGDSMIEAGILDGDLAIIEQKNIATNGDIVVALI-EN 159 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K I L N Y V D + +++ Sbjct: 160 EATIKRFFK-ENGFIRLQPENKNYEPIIV--EDCSILGKLV 197 >gi|301059953|ref|ZP_07200836.1| repressor LexA [delta proteobacterium NaphS2] gi|300445962|gb|EFK09844.1| repressor LexA [delta proteobacterium NaphS2] Length = 201 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 19/190 (10%), Positives = 52/190 (27%), Gaps = 13/190 (6%) Query: 36 TSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL-----DLPFSDGRTTEKKEKEI 90 + ++ + + PS E + + + + K++ + Sbjct: 12 SYISQYI----DAWRKSPSFEEVCSHFGFASYNTVSSYLNILERKGYIRRPKEKNKKRVV 67 Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-P 149 ++ + F G G + A + + + SM Sbjct: 68 EVISPVETRRFEFPLLGRVAAGAPIEAIE-DVDVVEVPPSMANEGDCFVLQVKGVSMEED 126 Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD +++ G+ ++ G K + ++L + P V+ Sbjct: 127 GILDGDFVVIRKQATAKNGEIVVALAD-GGATVKRYYRYKN-YVELRPSHGEMPPIRVQG 184 Query: 210 SDIEWIARIL 219 D +++ Sbjct: 185 EDFHIEGKVV 194 >gi|294637311|ref|ZP_06715609.1| toxin-antitoxin system, antitoxin component, Xre family [Edwardsiella tarda ATCC 23685] gi|291089519|gb|EFE22080.1| toxin-antitoxin system, antitoxin component, Xre family [Edwardsiella tarda ATCC 23685] Length = 216 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 12/212 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I L L G + ++ G E +++ S + +L + + Sbjct: 8 DRISLRMRTLKLKSKDLTDATGASKGTVSQWVNGGTEPSSKYMS--PLAGVLGVSERWLL 65 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + G + + +G + + + SP+ Sbjct: 66 EGGHIEEVSGNAIPGPDLYRRVPLLSQVQAGNWKEIVENHFDELTEWIETTAKVSPYAFS 125 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRR 189 + + S +G I+I++ G ++ + + T + K L Sbjct: 126 LRVVGDSMSNPGSGVS----LPEGSIVIVDPEGDPVNGRIVVARLKSTNEATVKKLSIDG 181 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218 I LM LN Y ++ S E + R+ Sbjct: 182 PN-IYLMPLNPNYKPIQLD-SMCEIVGVCVRV 211 >gi|302874911|ref|YP_003843544.1| transcriptional repressor, LexA family [Clostridium cellulovorans 743B] gi|307690469|ref|ZP_07632915.1| LexA repressor [Clostridium cellulovorans 743B] gi|302577768|gb|ADL51780.1| transcriptional repressor, LexA family [Clostridium cellulovorans 743B] Length = 200 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 54/210 (25%), Gaps = 38/210 (18%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 +I+ I ++ PS + GL TS +R G R PS Sbjct: 7 KQMEIYNYIKSVSAERGYPPSVREICTAVGLSSTSTVHGHLERLEKRGYIRRDPSKPRAI 66 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++L + P + + + +T Sbjct: 67 ELLKENKVEML------------------------SIPIIGKVTAGNPILAFEDIEDTFT 102 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P N + K SM R GD+ I+ N GD ++ G Sbjct: 103 IPSQFIKSN------KELFMLKVSGESMVEAGIRDGDLAIIEKQNTANNGDIVV-AMIEG 155 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 + K I L N V Sbjct: 156 EATIKTFYREEN-HIRLQPENKLLSPIIVN 184 >gi|57237226|ref|YP_178238.1| phage repressor protein, putative [Campylobacter jejuni RM1221] gi|57166030|gb|AAW34809.1| phage repressor protein, putative [Campylobacter jejuni RM1221] Length = 209 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 22/222 (9%) Query: 1 MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + I + D +A +L +A++ G++P +FN K I Sbjct: 1 MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGINPDTFNSMKFRNSIPYP------QI 52 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L N +I + + + +I LY + GG G + + Sbjct: 53 LNFLNERNISINYFFYGVSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 103 Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 E+ + + + SM PL + G I +++ + Sbjct: 104 DCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKAFKNKSICV-INTR 162 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I ++ Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 203 >gi|300933032|ref|ZP_07148288.1| LexA repressor [Corynebacterium resistens DSM 45100] Length = 273 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 15/222 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58 + ++I E I PS +A GL +S + E + Sbjct: 57 PTERQRRILEVIQNSKSLRGYPPSIREIADAVGLQSTSSVSYHLNLLEEA-------GYL 109 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + + + + + G GN Sbjct: 110 RREDKKPRAVDVREYEKRGKKTPGRKPSVQVTGTDDESLPSATYVPVVGQIAAGNPILAE 169 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E P G + + SM GD + + S + GD + Sbjct: 170 QNVEAHFPLPGELVGGGELFLLQVVGDSMRDAGILNGDWVAVRSQSTADFGDFVAAMID- 228 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + L+ N + + + +++ Sbjct: 229 GEATVKEFHKDSDG-LWLLPHNDLFEPI--PAEHSQILGKVV 267 >gi|296113158|ref|YP_003627096.1| peptidase S24-like protein [Moraxella catarrhalis RH4] gi|295920852|gb|ADG61203.1| peptidase S24-like protein [Moraxella catarrhalis RH4] Length = 240 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 66/224 (29%), Gaps = 16/224 (7%) Query: 13 IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 ++++ + L + + +A++ L+ + ++ + R S S+ K L ++ Sbjct: 14 LEKIEKEKGLNSFAKIAKEYDLNASYLSQLMNGNRQIGER--SARSLEKKLKLEKFSLDN 71 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN--- 128 + E + F+ F G+ P Sbjct: 72 CPLQSNINPDFESITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGR 131 Query: 129 ----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + D SM P + GD + ++ + R+ + K Sbjct: 132 RTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKR 191 Query: 185 LISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 L + ++S N +P + + E I + S Sbjct: 192 LYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 235 >gi|194289925|ref|YP_002005832.1| lexa repressor [Cupriavidus taiwanensis LMG 19424] gi|229621212|sp|B3R2P9|LEXA_CUPTR RecName: Full=LexA repressor gi|193223760|emb|CAQ69767.1| transcriptional LExA repressor [Cupriavidus taiwanensis LMG 19424] Length = 217 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 21/216 (9%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I R P + +A + G E R + + Sbjct: 1 MATLTPRQQQIFDLIRNTIRRTGFPPTRAEIAAEFGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ + I + S+ L G G+ Sbjct: 54 GVIELTPGASRGIRLKVSRSDSELPDQFS-------LPMAGVLQLTLPLVGRVAAGSPIL 106 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + D + + SM GD+L + A + G ++ + Sbjct: 107 AAEHIDRQYQVDASVFDERPDYLLRVRGLSMRDAGILDGDLLAVRRASEAANGKIVVAR- 165 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K L R G I+L++ N + VE + Sbjct: 166 LGDDVTVKRLQRR-GGHIELIAENPDFTNIIVEPGE 200 >gi|121594652|ref|YP_986548.1| LexA repressor [Acidovorax sp. JS42] gi|222110746|ref|YP_002553010.1| lexa repressor [Acidovorax ebreus TPSY] gi|171769452|sp|A1W897|LEXA_ACISJ RecName: Full=LexA repressor gi|254809095|sp|B9MI78|LEXA_DIAST RecName: Full=LexA repressor gi|120606732|gb|ABM42472.1| SOS-response transcriptional repressor, LexA [Acidovorax sp. JS42] gi|221730190|gb|ACM33010.1| SOS-response transcriptional repressor, LexA [Acidovorax ebreus TPSY] Length = 224 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 62/213 (29%), Gaps = 14/213 (6%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + ++I + I R P+ A L S N ++ Sbjct: 5 PKLTARQQQILDLIQTAIARTGAPPTRAEIAAELGFKSANAAEEHLQA---------LAR 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K + + + L R L P G G+ Sbjct: 56 KGVIELVSGTSRGIRLRGETVRNINAARGAQFNLPIPGLSQLTLPLVGRVAAGSPILAQE 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + G D K + SM GD+L + + + G ++ + Sbjct: 116 HVDQTYTVEGSLFAHKPDYLLKVRGMSMRDAGIMDGDLLAVQATREARNGQIIVAR-LGD 174 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K L R G +I+L+ N YPV VE + Sbjct: 175 DVTVKRL-RRTGSAIELLPENPDYPVIRVEPGE 206 >gi|283850428|ref|ZP_06367717.1| putative phage repressor [Desulfovibrio sp. FW1012B] gi|283574454|gb|EFC22425.1| putative phage repressor [Desulfovibrio sp. FW1012B] Length = 221 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 70/229 (30%), Gaps = 16/229 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I T + +A G+ +S + +K+ + Sbjct: 1 MKPDTFEDAYARIQAATHTR--TQTEIANLLGIKQSSISDAKKKNTIP------DGWLVT 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + +L + + + T Sbjct: 53 LYRSCGLEPDWILFGQEP--ASKGSAVSTGVRETASDYATAPTRATVYAMARTDSETGAW 110 Query: 121 PEIRSPHNGIYA--IQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRT 177 + ++ ++ K +T+M P+ R+G + ++ ++ G+ + Sbjct: 111 VRQGLENIPVFEALVRPNLLVVKMDNTAMEPVIRRGAYVGIDCDDVRIRSGEIYALDFPG 170 Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223 +V K ++ + + +++ N + + + D+ + + +W Q Sbjct: 171 EGLVIKRVVRDLEAKRLTILADNPAHQPQHLPLDTPDVTPLGKAVWVIQ 219 >gi|218891251|ref|YP_002440117.1| cI repressor protein [Pseudomonas aeruginosa LESB58] gi|218771476|emb|CAW27243.1| cI repressor protein [Pseudomonas aeruginosa LESB58] Length = 268 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 27/262 (10%), Positives = 68/262 (25%), Gaps = 48/262 (18%) Query: 2 TSFSHKKI-----WEAIDRMA----ERHN----LTPSGLARKAGLD--PTSFNKSKRFGI 46 T S ++ +AI + L + L K G ++ ++ + Sbjct: 7 TPLSQSQLDDAKRLQAIYKKRVKESRERGENPILNQAELGEKCGWKSGQSTVSQYMTGRV 66 Query: 47 EGRNRWPSTESIFKILAATNETICQLLDL----------------PFSDGRTTEKKEKEI 90 + E++ K+ ++ P + ++ Sbjct: 67 -----ALNLEALVKLAEHLQFEPSEVSPTLASGIRRAGRPDGVKSPDREAANAPFPDRLD 121 Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRSPHNGIY----AIQTQDTRHKTQD 144 + G V + + Sbjct: 122 AADLSEERYAFVPQYDAKAAAGLGSENPHVEIRATLAFKREWLKAKGVSPKSLAVIYADG 181 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--- 201 SM P GD+L+++ + ++ + + + K L+S + S N Sbjct: 182 ESMEPTINDGDVLLVDLSKIEPEDHQVFVLAGSEGAIVKRLVSSPLGRWIIRSDNEDKAE 241 Query: 202 YPVDTV---EMSDIEWIARILW 220 +P + + + I +++W Sbjct: 242 FPDRNLSREDNDEHRIIGKVIW 263 >gi|296877345|ref|ZP_06901385.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431865|gb|EFH17672.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 228 Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 61/220 (27%), Gaps = 15/220 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + LT +A + G+ +++ +R + + + +IL Sbjct: 5 EKLKIRRKELKLTQKDIADQLGVSYQAYSAWERGVKQPSRE--KVQQLEQILNVPKGFFT 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLL----------YFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ + + + E K + + + + Sbjct: 63 EIEIVRLYNTLSDEGKNNALSYVRGLVQKEKCKNIVSMSEKLYEYHVYEQMSAGIGSSVY 122 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + D SM P Y+ G + ++ G + Sbjct: 123 NDQNYDTVYFDEELAHDFASWISGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQT 181 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 K + + + + L+S+N Y + + + I+ Sbjct: 182 YIKRVY-QEEQGLRLVSINPKYRDIFLSYDEDPRIVGIIV 220 >gi|154482891|ref|ZP_02025339.1| hypothetical protein EUBVEN_00588 [Eubacterium ventriosum ATCC 27560] gi|149736175|gb|EDM52061.1| hypothetical protein EUBVEN_00588 [Eubacterium ventriosum ATCC 27560] Length = 204 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 35/219 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59 ++I + I P+ + K GL TS S +E R P+ Sbjct: 8 KQQQILDYIKEEILSKGYPPTVREICEKVGLKSTSSVHSHLSTLENNGYIRRDPTKPRAI 67 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ + + P + + N + Sbjct: 68 EIMDD--------------------EFGLVRREMTNIPIIGRVAAGAPLLAVENIEDYFA 107 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P P+ + K Q SM+ + + +GD LI+ A Q + G+ ++ Sbjct: 108 LPTEFLPN-------GEVFILKVQGESMINVGFYEGDYLIIEKAAQADNGEIVVALID-D 159 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K I L N V+ I I R Sbjct: 160 SVTVKRFFK-EDGHIRLQPENDLMEPIIVDDCAIVGIVR 197 >gi|120434637|ref|YP_860327.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117576787|emb|CAL65256.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 255 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 16/214 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + E +N T S A G+ ++ +R + S + + ++L L Sbjct: 13 KEVREENNFTQSEFAALIGIKNST-ADIERGRTK-----LSGKVVAELLRQFGINPLWLF 66 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 K + ++ + + + + I Sbjct: 67 GESGQKYLKISKGDVSPKVVTVDNADNENIVLVNQKAA-AGYPHNVQDVEWYNQLPAFDI 125 Query: 134 Q------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKVL 185 + + SMLP YR G+ ++ + + +++ + ++ K L Sbjct: 126 PLPEFRNATYRGFQIEGDSMLPDYRPGEWVMGKAVSSIEEASNNKVYVIVMYDSVLVKKL 185 Query: 186 ISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+SLN Y + + DI+ I ++ Sbjct: 186 QKMPDPSKVLLISLNEEYLPLEINVHDIQEIWQV 219 >gi|83592360|ref|YP_426112.1| phage repressor [Rhodospirillum rubrum ATCC 11170] gi|83575274|gb|ABC21825.1| phage repressor [Rhodospirillum rubrum ATCC 11170] Length = 265 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 59/237 (24%), Gaps = 32/237 (13%) Query: 7 KKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + +R+A + + LA + G ++ E P + A Sbjct: 29 DRAGRFSERLATALQGRSANWLAGRIGGSASTVRDWLSATSE-----PGLGKLVATAACL 83 Query: 66 NETICQ--------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + G + + + G Sbjct: 84 GVPLDWLATGRVAEGATAPPSDLFGERGGGAVTRAPLSVRPAEDETAPHRGLALYDTVAA 143 Query: 112 GN-------KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 + +PE + + SM P GD+ ++++A + Sbjct: 144 AARMGGGHPGAAGLDLPESYLRDHLRL-DPQRAIAVAVHGDSMEPALSDGDLALIDTATR 202 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218 D L G+ K L ++ + S N Y T+ + + R+ Sbjct: 203 ALERDDLYAFLLEGEGYIKRLQKAGA-AVIVHSDNPAYSDWTIPREIMASMHLLGRV 258 >gi|325068467|ref|ZP_08127140.1| SOS-response transcriptional repressor, LexA [Actinomyces oris K20] Length = 262 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 64/223 (28%), Gaps = 22/223 (9%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTESIFK 60 ++EA+ H PS + + GL S +K +R G+ R P + Sbjct: 44 VYEAVRAAIATHGYPPSLREIGEQVGLTSPSSVKHQLDKLERLGLVRRDPNRPRAMEVVC 103 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +A + S + E P + + + + + Sbjct: 104 ADSAPSGRAATPGSAHVSSLDSPSVPGVEDGEAVAVPLVGRIAAGAPILAEQEVTDVMAL 163 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + + SM GD +++ S G+ + D Sbjct: 164 PRRLTG-------EGELFMLEVHGDSMIEAAICDGDWVVVRSQPDAANGEIVAAMIEDVD 216 Query: 180 ---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL R L+ N Y + + +++ Sbjct: 217 GASATVKVLSRR-DGHQWLLPRNSSYAPI--DGDQATIMGKVV 256 >gi|167622201|ref|YP_001672495.1| LexA repressor [Shewanella halifaxensis HAW-EB4] gi|189046547|sp|B0TNT3|LEXA_SHEHH RecName: Full=LexA repressor gi|167352223|gb|ABZ74836.1| transcriptional repressor, LexA family [Shewanella halifaxensis HAW-EB4] Length = 206 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +AR+ G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIADTGMPPTRAEIARRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA ++ G G G Sbjct: 45 EHLKALAKKGCIEIMPGTSRGIKLTQENTEDA-----------DLGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + +GD+L ++ Q G ++ + Sbjct: 94 AQEHVEQHYKVDPAMFKPSADFLLRVRGDSMKNIGILEGDLLAVHKIQQARNGQIVVAR- 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L + N Y V+++ Sbjct: 153 VEDDVTVKRFEKK-GNKVFLHAENEEYSPIEVDLA 186 >gi|56692918|ref|YP_164293.1| transcriptional regulator [Pseudomonas phage F116] gi|48527504|gb|AAT45879.1| transcriptional regulator [Pseudomonas phage F116] Length = 265 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 56/247 (22%), Gaps = 37/247 (14%) Query: 8 KIWEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + AI +T +A GL T+ + + + + E+ Sbjct: 17 QALNAIYKAKKRELGITQEKIA-LEGLGATTQSAASHYLTGKN--ALNAEAAAVFARYLE 73 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------- 119 + + + P+ P + Sbjct: 74 IQVRDFSPRLAEEIERMATTVRPKPVANTRGDLEPIPVWDDGDPLDADEVEIPYFNEIQI 133 Query: 120 ------------------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 P +G+ SM PL G I+ ++ Sbjct: 134 AAGDGRLPDLEQAKRKIRFPRTVLRESGV--DPKNSVCVNVTGNSMEPLIADGAIIGVDL 191 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE-----WI 215 ++ + + K + G I L S N YP + + I Sbjct: 192 SVSTITDGEIYALKHDDMLRVKFVYRLPGGGIRLRSFNRDEYPDEEYTRDQMRESNLSII 251 Query: 216 ARILWAS 222 + W S Sbjct: 252 GWVFWWS 258 >gi|325927202|ref|ZP_08188463.1| SOS-response transcriptional repressor, LexA [Xanthomonas perforans 91-118] gi|325542430|gb|EGD13911.1| SOS-response transcriptional repressor, LexA [Xanthomonas perforans 91-118] Length = 213 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + +AR G + E++ Sbjct: 6 TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEHAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G T + P G + Sbjct: 54 AIRRVPGQARGIRLAGQGAQTRTAPVSEAARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|296159090|ref|ZP_06841917.1| Peptidase S24/S26A/S26B, conserved region [Burkholderia sp. Ch1-1] gi|295890651|gb|EFG70442.1| Peptidase S24/S26A/S26B, conserved region [Burkholderia sp. Ch1-1] Length = 232 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 24/220 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 W+ I P+ LA+K G + K G R I +I Sbjct: 8 WDRIASRLSASGRRPAWLAKKLGTGTNTITNWKTRGGAPLAR------ARDIAEVLGCSI 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---------GNKWNTVGV 120 +L+ ++ T + E +G +P + + Sbjct: 62 DELMADEATNQLTKSEVEAYNAPHSGDNFTAGPDIKPRFYPEISWVQAGMWTEIADNFVL 121 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174 + + + + + SM P + G +L + G ++++ Sbjct: 122 ADDARQYQCHIDLGDKGFVLRVDGVSMTAPSGVFPTFPPGMLLFVRPNEDAIPGKFVIVR 181 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT--VEMSDI 212 K L+ G + L +LN +P V+ D+ Sbjct: 182 RNGNTATFKKLVQIEGE-LYLEALNQDWPHRYMRVQKDDV 220 >gi|294626630|ref|ZP_06705227.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599050|gb|EFF43190.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 213 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + +AR G + E++ Sbjct: 6 TQQAILALITERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEHAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G T + P G + Sbjct: 54 AIRRVPGQARGIRLAGQGAQTRTAPVSEAARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|150017419|ref|YP_001309673.1| LexA repressor [Clostridium beijerinckii NCIMB 8052] gi|149903884|gb|ABR34717.1| SOS-response transcriptional repressor, LexA [Clostridium beijerinckii NCIMB 8052] Length = 201 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 59/221 (26%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 +I+E + E PS + L TS KR +G R PS Sbjct: 7 KQSEIYEFLKSYTESKGYPPSVREICEAVSLRSTSTVHGHLKRLEKKGMIKRDPSKPRAL 66 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I + + + T N +T Sbjct: 67 EIAELSMPKKEMINIPIIGKITAGLP----------------------ILATENIEDTFT 104 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P H+ + + SM+ R D+ I+ SA GD ++ Sbjct: 105 LPLDFIKHDR------ELFMLRVSGESMVNAGIRDNDLAIIESAQTAINGDIVVALI-ED 157 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V D + +++ Sbjct: 158 SATIKRFFKEKD-HIRLQPENDAMDPIIV--DDCMILGKLV 195 >gi|169796566|ref|YP_001714359.1| putative transcriptional regulator; putative phage-related protein [Acinetobacter baumannii AYE] gi|213156321|ref|YP_002318741.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB0057] gi|215484026|ref|YP_002326251.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Acinetobacter baumannii AB307-0294] gi|239503695|ref|ZP_04663005.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Acinetobacter baumannii AB900] gi|301347669|ref|ZP_07228410.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Acinetobacter baumannii AB056] gi|301513475|ref|ZP_07238712.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Acinetobacter baumannii AB058] gi|301597612|ref|ZP_07242620.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Acinetobacter baumannii AB059] gi|332854621|ref|ZP_08435443.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332867717|ref|ZP_08437806.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] gi|169149493|emb|CAM87381.1| putative transcriptional regulator; putative phage-related protein [Acinetobacter baumannii AYE] gi|193076921|gb|ABO11654.2| Peptidase S24 S26A and S26B [Acinetobacter baumannii ATCC 17978] gi|213055481|gb|ACJ40383.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB0057] gi|213988866|gb|ACJ59165.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Acinetobacter baumannii AB307-0294] gi|332727905|gb|EGJ59304.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332733801|gb|EGJ64952.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] Length = 223 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 56/218 (25%), Gaps = 6/218 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNE 67 + + + + T + +A + ++ + P + Sbjct: 3 LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTT 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRS 125 + T + F ++ + +P S Sbjct: 63 GNSEDSFRESDVFSPTVVNNDAADQYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPAS 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 Q K + SM + GD++ ++ + + G+ + K + Sbjct: 123 FFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMIKQI 182 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 S+ L SLN + V + + + R W Sbjct: 183 FKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220 >gi|22126831|ref|NP_670254.1| phage repressor protein cI [Yersinia pestis KIM 10] gi|45440748|ref|NP_992287.1| putative prophage repressor protein [Yersinia pestis biovar Microtus str. 91001] gi|51595612|ref|YP_069803.1| cI prophage repressor protein [Yersinia pseudotuberculosis IP 32953] gi|108806944|ref|YP_650860.1| putative prophage repressor protein [Yersinia pestis Antiqua] gi|108812905|ref|YP_648672.1| prophage repressor protein [Yersinia pestis Nepal516] gi|145599733|ref|YP_001163809.1| prophage repressor protein [Yersinia pestis Pestoides F] gi|149366781|ref|ZP_01888815.1| putative prophage repressor protein [Yersinia pestis CA88-4125] gi|153947774|ref|YP_001401715.1| phage repressor protein [Yersinia pseudotuberculosis IP 31758] gi|162419046|ref|YP_001605972.1| phage repressor protein [Yersinia pestis Angola] gi|165924786|ref|ZP_02220618.1| phage repressor protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936119|ref|ZP_02224688.1| phage repressor protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009972|ref|ZP_02230870.1| phage repressor protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211761|ref|ZP_02237796.1| phage repressor protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400259|ref|ZP_02305772.1| phage repressor protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419734|ref|ZP_02311487.1| phage repressor protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424151|ref|ZP_02315904.1| phage repressor protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468053|ref|ZP_02332757.1| phage repressor protein [Yersinia pestis FV-1] gi|170025053|ref|YP_001721558.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186894677|ref|YP_001871789.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218928387|ref|YP_002346262.1| putative prophage repressor protein [Yersinia pestis CO92] gi|229841180|ref|ZP_04461339.1| putative prophage repressor protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843284|ref|ZP_04463430.1| putative prophage repressor protein [Yersinia pestis biovar Orientalis str. India 195] gi|229894101|ref|ZP_04509287.1| putative prophage repressor protein [Yersinia pestis Pestoides A] gi|229903334|ref|ZP_04518447.1| putative prophage repressor protein [Yersinia pestis Nepal516] gi|270487141|ref|ZP_06204215.1| peptidase S24-like domain protein [Yersinia pestis KIM D27] gi|294503243|ref|YP_003567305.1| putative prophage repressor protein [Yersinia pestis Z176003] gi|21959861|gb|AAM86505.1|AE013897_1 putative phage repressor protein cI [Yersinia pestis KIM 10] gi|45435606|gb|AAS61164.1| putative prophage repressor protein [Yersinia pestis biovar Microtus str. 91001] gi|51588894|emb|CAH20508.1| putative cI prophage repressor protein [Yersinia pseudotuberculosis IP 32953] gi|108776553|gb|ABG19072.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24 [Yersinia pestis Nepal516] gi|108778857|gb|ABG12915.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24 [Yersinia pestis Antiqua] gi|115346998|emb|CAL19890.1| putative prophage repressor protein [Yersinia pestis CO92] gi|145211429|gb|ABP40836.1| prophage repressor protein [Yersinia pestis Pestoides F] gi|149291155|gb|EDM41230.1| putative prophage repressor protein [Yersinia pestis CA88-4125] gi|152959269|gb|ABS46730.1| phage repressor protein [Yersinia pseudotuberculosis IP 31758] gi|162351861|gb|ABX85809.1| phage repressor protein [Yersinia pestis Angola] gi|165915733|gb|EDR34341.1| phage repressor protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923846|gb|EDR40978.1| phage repressor protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991368|gb|EDR43669.1| phage repressor protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207532|gb|EDR52012.1| phage repressor protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962475|gb|EDR58496.1| phage repressor protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050208|gb|EDR61616.1| phage repressor protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057000|gb|EDR66763.1| phage repressor protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751587|gb|ACA69105.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] gi|186697703|gb|ACC88332.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis PB1/+] gi|229679104|gb|EEO75207.1| putative prophage repressor protein [Yersinia pestis Nepal516] gi|229689631|gb|EEO81692.1| putative prophage repressor protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697546|gb|EEO87593.1| putative prophage repressor protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703986|gb|EEO90999.1| putative prophage repressor protein [Yersinia pestis Pestoides A] gi|262361282|gb|ACY58003.1| putative prophage repressor protein [Yersinia pestis D106004] gi|262365181|gb|ACY61738.1| putative prophage repressor protein [Yersinia pestis D182038] gi|270335645|gb|EFA46422.1| peptidase S24-like domain protein [Yersinia pestis KIM D27] gi|294353702|gb|ADE64043.1| putative prophage repressor protein [Yersinia pestis Z176003] gi|320015925|gb|ADV99496.1| putative prophage repressor protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 240 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 71/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + + + ++ +A + G+ ++ N+ + Sbjct: 4 KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGVNPLNIT--NA 61 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + K+L + L + + + S + + GN Sbjct: 62 AAFAKVLNEPISSFSPSLAKELAKMAESLSITTRSGAKDKPAVSVANSYPLISWISAGNW 121 Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167 + + + +I + SM + +G I++++ + Sbjct: 122 YEAIEPYTLRDIEIWPESTKHAHESAFWLSVKGDSMTSPSGISFPEGMIILVDPEKEPMP 181 Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + K L+ G L LN Y + + + + + ++ Sbjct: 182 GNFVIAKLTDDNEATFKKLVVDAGIKY-LKPLNPAYRLIELNGN-CKILGVVV 232 >gi|157371448|ref|YP_001479437.1| putative phage repressor [Serratia proteamaculans 568] gi|157323212|gb|ABV42309.1| putative phage repressor [Serratia proteamaculans 568] Length = 248 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 62/248 (25%), Gaps = 31/248 (12%) Query: 3 SFSHKKIWEAIDRMAE---RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + + + + R + + A + ++ E +R Sbjct: 1 METKEIRRNNLRELMASYARQGVNQNEFALLVESSSPTLSQI---SGEKSSRNLGDNLAR 57 Query: 60 KILAATNETICQLLDLPF--------------SDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 +I A N K Sbjct: 58 RIEAKLNLPKGWFDVFHEKQLVRPFDNVAAESDFQPARLKPVVWEDTEQDKEEFVEIPLL 117 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILIL 159 F G+ + E S Y + + +SM P + GD++ + Sbjct: 118 DINFSAGDGCYEIVDREEFSLIFRRYYLHKMGVAVNAARIIRISGSSMEPRLQDGDVVGI 177 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDIEW 214 N+ + + KVLI + + + SLN Y + + + Sbjct: 178 NTDDTRIREGKTYAIRHGNLLRVKVLIEQPDGGVTIRSLNREEYQDEHLSYPQRKDQLVV 237 Query: 215 IARILWAS 222 + R+ W+S Sbjct: 238 LGRVFWSS 245 >gi|332290413|ref|YP_004421265.1| LexA repressor [Gallibacterium anatis UMN179] gi|330433309|gb|AEC18368.1| LexA repressor [Gallibacterium anatis UMN179] Length = 206 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 58/198 (29%), Gaps = 14/198 (7%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + ++ N + K+L T T + L + ++ T KE+ L Sbjct: 1 MSQSAINHYLNGINALNAYIAT--KFAKLLKVTVSTFSERLAIEIAEMAKTIDKEEIALL 58 Query: 93 LYFPPSGSGGFFDSGVFPTGNKW----NTVGVPEIRSPHNGIY------AIQTQDTRHKT 142 G D + V V Y Sbjct: 59 ASTKNEGEKIIIDVLNVEASAGNGSVGDLVEVVSRLYYVPEQYYTLFRGINPEGLRVINI 118 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 + SM P + GD++ ++ Q GD + I + K L G ++S N Y Sbjct: 119 KGDSMAPTFNSGDMIFVDINTQTFEGDGVYIFNYNNSLYVKRLQR-AGEKFLVLSDNPTY 177 Query: 203 PVDTV-EMSDIEWIARIL 219 + + S + +++ Sbjct: 178 REWEINDESQLFIQGKVI 195 >gi|255319235|ref|ZP_05360452.1| phage repressor [Acinetobacter radioresistens SK82] gi|255303628|gb|EET82828.1| phage repressor [Acinetobacter radioresistens SK82] Length = 247 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 16/207 (7%) Query: 22 LTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80 +T ++ G + +F+ + +++ K+ ++ + Sbjct: 35 VTQEDVSDACGWNTQGAFSAYLNGRTP-----LNLDALIKLSNYFGVPANEISPELAAGL 89 Query: 81 RTTEKKEKEIPLLYFPPSGSGG---FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 + + + + G GN + +P + + Sbjct: 90 ESALVEITDYADNNIEIADFDGLKRVPILTYVQAGNWREAIQMPSD-NFIFVSVDVSPNS 148 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-----RGRS 192 SMLP +R GD++I+++ ++ D + + I K SR Sbjct: 149 FGAYVVGDSMLPDFRDGDLIIIDTQVKPQPTDFV-MAEDPEGITFKKYRSRGINEEGKEV 207 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 DL+ LN +P+ + S +E I ++ Sbjct: 208 FDLVPLNPDFPIIRSDRSRVEIIGTVV 234 >gi|315930676|gb|EFV09696.1| peptidase S24-like family protein [Campylobacter jejuni subsp. jejuni 305] Length = 222 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 69/222 (31%), Gaps = 22/222 (9%) Query: 1 MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + I + D +A +L +A++ G+ P +FN K I Sbjct: 14 MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L N +I + + + +I LY + GG G + + Sbjct: 66 LNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 116 Query: 119 GVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 E I + + SM PL + G I +++ + Sbjct: 117 DCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I ++ Sbjct: 176 DGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 216 >gi|313116334|gb|ADR32142.1| phage repressor protein, putative [Campylobacter jejuni] Length = 222 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 69/222 (31%), Gaps = 22/222 (9%) Query: 1 MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + I + D +A +L +A++ G+ P +FN K I Sbjct: 14 MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L N +I + + + +I LY + GG G + + Sbjct: 66 LNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 116 Query: 119 GVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 E I + + SM PL + G I +++ + Sbjct: 117 DCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I ++ Sbjct: 176 DGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 216 >gi|312795579|ref|YP_004028501.1| hypothetical protein RBRH_01118 [Burkholderia rhizoxinica HKI 454] gi|312167354|emb|CBW74357.1| unnamed protein product [Burkholderia rhizoxinica HKI 454] Length = 135 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 7/99 (7%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 N ++A + + SM P+ GD +++N A + D + + G ++ K L Sbjct: 38 ENYLHARPEDLSVLRVHGDSMYPVLHDGDNILINHAFT-SPQDGIYVIRVDGQVLVKRLQ 96 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD------IEWIARIL 219 G + ++S N YP V + D I R++ Sbjct: 97 RLHGPFLRVISANPDYPPYEVPIEDANDQRGFAVIGRVV 135 >gi|260844977|ref|YP_003222755.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|257760124|dbj|BAI31621.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str. 12009] Length = 239 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 71/225 (31%), Gaps = 16/225 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ + D ++ +L+ A G + ++ I +TE+ K A Sbjct: 16 ERLRKIWDEKRKQLSLSQEKAADILGFKTQGAVSQLLNAKI-----ALNTENTLKFAALL 70 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIR 124 ++ R+ F + + + Sbjct: 71 QVPAEEINPDLSDLLRSIRTHTPGNRRNLFEKYYEYPLLSCVQAGAFTMDDFSYTQKDAI 130 Query: 125 SPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + + SM P + +G +++++ ++ GD + + Sbjct: 131 KWISTTTKASDRSFWLEVKGHSMTAPQGGKPSFPEGMLILVDPEREIEDGDFCVARMNGD 190 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K I G++ L LN + + + +++ +++ SQ Sbjct: 191 EFTFKRFIRESGKAY-LEPLNPRFEMIECN-ENCQFVGKVI-KSQ 232 >gi|240124036|ref|ZP_04736992.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae PID332] gi|268682662|ref|ZP_06149524.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268622946|gb|EEZ55346.1| transcriptional regulator [Neisseria gonorrhoeae PID332] Length = 228 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 23/213 (10%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F + G P +E++ KI +I LL + Sbjct: 18 QAKIASDIEMTIAGFGRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIY 131 K+ G T+ + + Sbjct: 73 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVGHEKPVFTMAFRRHWIEN-YVT 131 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + + SM + GD +++N D L + +++ K L G Sbjct: 132 RDTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGG 190 Query: 192 SIDLMSLNCCYPVDTVEM----SDIEWIARILW 220 I+++S N YP + + D+E I R+ W Sbjct: 191 IINVISANEAYPAFEINLNDLTDDVEIIGRVEW 223 >gi|326773661|ref|ZP_08232944.1| repressor LexA [Actinomyces viscosus C505] gi|326636891|gb|EGE37794.1| repressor LexA [Actinomyces viscosus C505] Length = 249 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 22/223 (9%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTESIFK 60 ++EA+ H PS + + GL S +K +R G+ R P + Sbjct: 31 VYEAVRAAIATHGYPPSLREIGEQVGLTSPSSVKHQLDKLERLGLVRRDPNRPRAMEVVC 90 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +A + + + E P + + + + + Sbjct: 91 ADSAPSGRAATPGSAHVTSLDSPSVPGVEDGEAVAVPLVGRIAAGAPILAEQEVTDVMAL 150 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + + SM GD +++ S G+ + D Sbjct: 151 PRRLTG-------EGELFMLEVHGDSMIEAAICDGDWVVVRSQPDAANGEIVAAMIEDVD 203 Query: 180 ---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL R L+ N Y + + +++ Sbjct: 204 GASATVKVLSRR-DGHQWLLPRNSSYAPI--DGDQATIMGKVV 243 >gi|308389235|gb|ADO31555.1| putative transcriptional regulator [Neisseria meningitidis alpha710] gi|325130205|gb|EGC52978.1| hypothetical protein NMBOX9930304_1032 [Neisseria meningitidis OX99.30304] gi|325136373|gb|EGC58981.1| hypothetical protein NMBM0579_1115 [Neisseria meningitidis M0579] Length = 239 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 64/229 (27%), Gaps = 35/229 (15%) Query: 20 HNLTPSGLARKAGLDPTSFNK-SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 H PS + K + + FN+ K I P+ + + KI T + LL Sbjct: 14 HGAKPSDIYNKIEMSASGFNRVWKEGAI------PTADYLVKIQEVTGCDLNWLLTGKGL 67 Query: 79 DGRTTEKKEKEIPLLYF-------------PPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + E F + E Sbjct: 68 PYLDKARPENAGAFSVSRNSDGITDTMGNPVDLSEFVFVPRYNVAAAAGYGAPVFGEEPL 127 Query: 126 P---------HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 N + + + + SM + GD +++N A + D L + Sbjct: 128 FCLAFRKYWIDNYVTKQPEKLSVITVKGDSMEGVLNHGDSILINHAET-DPRDGLYVLRI 186 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILWA 221 D+ K + + + S N Y +++ DI I R+ W Sbjct: 187 GNDLFVKRVQRIP-GKLLVTSENPRYAPFEIDLSNAQDDIAIIGRVEWY 234 >gi|237748145|ref|ZP_04578625.1| repressor protein cI [Oxalobacter formigenes OXCC13] gi|229379507|gb|EEO29598.1| repressor protein cI [Oxalobacter formigenes OXCC13] Length = 217 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 70/219 (31%), Gaps = 36/219 (16%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET------------------ 68 +A K G+ T+ + +R + + E++ I A + Sbjct: 1 MANKTGIGQTTIGRIRRGEVNA-----TAENLRAIADAFDVPVGYLYGEETVHGIRVDMD 55 Query: 69 -------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + K ++PL+ + +G+ P G+ + P Sbjct: 56 IRQPSPAPKRTMGTTRGYFGPPPDKIGQLPLISWVQAGNWTEAIDNFAP-GDAEEWIPCP 114 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-I 180 S H + + + + D S + GD + ++ + G ++++ Sbjct: 115 FKHSQHAFVLKVVGKSMYNPGNDKS----FNDGDYIAVDPCREARNGSMVVVRLDDDHTA 170 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ LM+LN +P + + I ++ Sbjct: 171 TFKQLLVEPNGERMLMALNPSWPNRIIHIHASATICGVV 209 >gi|192361112|ref|YP_001982175.1| LexA repressor [Cellvibrio japonicus Ueda107] gi|229621197|sp|B3PEX1|LEXA_CELJU RecName: Full=LexA repressor gi|190687277|gb|ACE84955.1| LexA repressor [Cellvibrio japonicus Ueda107] Length = 200 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 39/217 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++ + I + E P + +AR G + + E Sbjct: 1 MYNLTSRQEQVLQLIKQYTEETGYPPTRAEIARILGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA ++ G G GN Sbjct: 45 EHIKALARKGAIEIMPGASRGIRLTESQS----------------GIPIVGRVAAGNPIL 88 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM GD+L ++ QV G ++ + Sbjct: 89 AQEHIEDYCNIPNSFFSPSADYFLRVHGMSMKDAGILDGDLLAVHRTDQVRNGQIVVARI 148 Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSD 211 ++ K + + ++L N + V V+M D Sbjct: 149 -GEEVTVKRFKRQGNQAQVELWPENPDFKVIHVDMRD 184 >gi|120611227|ref|YP_970905.1| LexA repressor [Acidovorax citrulli AAC00-1] gi|326317456|ref|YP_004235128.1| transcriptional repressor, LexA family [Acidovorax avenae subsp. avenae ATCC 19860] gi|171769179|sp|A1TQ93|LEXA_ACIAC RecName: Full=LexA repressor gi|120589691|gb|ABM33131.1| SOS-response transcriptional repressor, LexA [Acidovorax citrulli AAC00-1] gi|323374292|gb|ADX46561.1| transcriptional repressor, LexA family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 224 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 14/213 (6%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + ++I + I R P+ A S N ++ Sbjct: 5 PKLTARQQQILDLIQTAIARTGAPPTRAEIAAEFGFKSANAAEEHLQA---------LAR 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K + + + L R+ L P G G+ Sbjct: 56 KGVIELVSGTSRGIRLRGEAVRSINAARGTQFHLPIPGISQLMLPLIGRVAAGSPILAEE 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + G D K + SM GD+L + S + G ++ + Sbjct: 116 HVDQTYSVEGSLFQHKPDYLLKVRGMSMRDAGIMDGDLLAVQSTREARNGQIIVAR-LGD 174 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L R +I+L+ N YP+ TV+ + Sbjct: 175 EVTVKRL-RRTAGAIELLPENPDYPIITVQPGE 206 >gi|319898921|ref|YP_004159014.1| SOS response regulator lexA protein [Bartonella clarridgeiae 73] gi|319402885|emb|CBI76436.1| SOS response regulator lexA protein [Bartonella clarridgeiae 73] Length = 221 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 14/216 (6%) Query: 17 AERHNLTPSGLARKAGL---DPTSFNKS-----KRFGIEGRN-RWPSTESIF---KILAA 64 + + PS K L +S ++ +R I R + E + K+ Sbjct: 1 MKEIGVPPSFDEMKNALELASKSSIHRLVTALEERGFIRRLPNRARAVEVVRLPDKVTFN 60 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + R K + + + G +G + + Sbjct: 61 LSPARKIFPSVIQKNKRKISKNSSNVNISIIEDKKNITIPIMGRIASGVPISAIQQQTNT 120 Query: 125 SPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + + SM D +I+ G+ ++ + K Sbjct: 121 LSLPSSMIGLGEHYALEVRGDSMIEAGILDRDTVIIKCQNVAMPGEIIVALIDREEATLK 180 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + SI+L + N Y ++ +++ Sbjct: 181 RYRRKGA-SIELEAANPHYETRIYGPERVKIQGKLV 215 >gi|163857094|ref|YP_001631392.1| LexA repressor [Bordetella petrii DSM 12804] gi|229621207|sp|A9IR25|LEXA_BORPD RecName: Full=LexA repressor gi|163260822|emb|CAP43124.1| LexA repressor [Bordetella petrii] Length = 224 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 14/209 (6%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I + I R P + +AR G + ++ R + E Sbjct: 9 QQEILDLIRLTVSRTGFPPTRAEIARALGFRSP---NAAEDHLKALARKGAIELTA---- 61 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + L + G G G+ E Sbjct: 62 --GASRGIRLKDAGETIPPGPETAASALAGMADAVGRLLLPLVGRVAAGSPILAAEHVER 119 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + QT D K + SM +GD+L + A + G ++ + ++ Sbjct: 120 EVGVDVDLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-LGDEVTV 178 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L I+L+ N + V+ + Sbjct: 179 KRLQRH-QGRIELLPENPDFSPIVVDGTQ 206 >gi|260062823|ref|YP_003195903.1| hypothetical protein RB2501_14574 [Robiginitalea biformata HTCC2501] gi|88784391|gb|EAR15561.1| hypothetical protein RB2501_14574 [Robiginitalea biformata HTCC2501] Length = 251 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 57/212 (26%), Gaps = 18/212 (8%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 + T + A G+ T+ +R + S + ++L L Sbjct: 14 RRQLGYTQAEFAELLGIPSTT-ADIERGRTK-----LSGMVVSELLRQFKINPLWLFGSS 67 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-- 134 ++ S + + + Sbjct: 68 ERQYLEPASVNVMPKVV-TVDSADRENMVLVNAKAAAGYPQNIQDSSWFRRLPAFDLPIP 126 Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + SMLP R GD ++ ++ +V+ + ++ K + Sbjct: 127 QFRNATYRGFQVEGDSMLPNLRPGDWVLARAVSDWKEVSPNRIYV-IVLEDAVLVKKVEK 185 Query: 188 RRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G L+SLN Y + S ++ + + Sbjct: 186 LPGTGRFRLISLNESYAPYEISESQLQEVWEV 217 >gi|260558030|ref|ZP_05830242.1| peptidase S24 S26A and S26B [Acinetobacter baumannii ATCC 19606] gi|260408540|gb|EEX01846.1| peptidase S24 S26A and S26B [Acinetobacter baumannii ATCC 19606] Length = 223 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 57/225 (25%), Gaps = 20/225 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + T + +A + ++ + + + + I Sbjct: 3 LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESG------KNLKSAFLPLIAQFLGVD 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGV------- 120 L D + F G ++ Sbjct: 57 AYWLTTGNSEDSFRESDVFSPTVVSNDAADQYVWIEVVEANFSCGTG-ESIEFHFDAING 115 Query: 121 --PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 P S Q K + SM + GD++ ++ + + G Sbjct: 116 KIPFPASFFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAG 175 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 + + K + S+ L SLN + V + + + R W Sbjct: 176 EGMIKQIFKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220 >gi|212637508|ref|YP_002314033.1| LexA repressor [Shewanella piezotolerans WP3] gi|226736105|sp|B8CUX0|LEXA_SHEPW RecName: Full=LexA repressor gi|212558992|gb|ACJ31446.1| Peptidase S24, LexA repressor [Shewanella piezotolerans WP3] Length = 206 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +AR+ G + + E Sbjct: 1 MRPLTPRQAEILELIKRNISDTGMPPTRAEIARRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E +E E+ L G Sbjct: 45 EHLKALAKKGCIEIIPGTSRGIRLTQEEPEEVELGLPLIGQ-----------VAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + +GD+L ++ + Q G ++ + Sbjct: 94 AQEHVEQHYKVDPAMFRPSADFLLRVRGDSMKDIGILEGDLLAVHKSQQARNGQVVVAR- 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L + N Y V+++ Sbjct: 153 VEDDVTVKRFEKK-GNKVFLHAENEEYSPIEVDLA 186 >gi|225025512|ref|ZP_03714704.1| hypothetical protein EIKCOROL_02412 [Eikenella corrodens ATCC 23834] gi|224941796|gb|EEG23005.1| hypothetical protein EIKCOROL_02412 [Eikenella corrodens ATCC 23834] Length = 251 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 69/236 (29%), Gaps = 45/236 (19%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 P+ +AR + + ++ P E++ I L+ Sbjct: 17 PAQIARDLNWSISGVLRIFE-----KDTIPKAETLVSIQKLKGCDWNWLMTGEGVPFPKE 71 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP----------------- 126 L + + + +T+G P S Sbjct: 72 AAAGGNQELHEPVAGYNAKWIAQSIQTAPGVRDTLGNPVDLSEFVFIPRYNVRASAGNGF 131 Query: 127 ------------------HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + A + K + SM P+ D +++N A + G Sbjct: 132 PVGNEEPLFPMAFRRFWIEHYLNADPKDLSVIKVRGDSMEPVLCNNDNILVNHAKR-KPG 190 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220 + L + G++V K G + L S N Y +++ +D+E + R+ W Sbjct: 191 NGLFVVRIGGELVVKYTQIMPGSKLLLKSANEIYEPFELDVAEPDADVEIVGRVEW 246 >gi|194432399|ref|ZP_03064686.1| repressor protein C2 [Shigella dysenteriae 1012] gi|194419286|gb|EDX35368.1| repressor protein C2 [Shigella dysenteriae 1012] gi|320181565|gb|EFW56482.1| repressor protein CI [Shigella boydii ATCC 9905] gi|332093710|gb|EGI98766.1| repressor protein CI [Shigella dysenteriae 155-74] gi|332093844|gb|EGI98898.1| repressor protein CI [Shigella boydii 5216-82] Length = 239 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 72/225 (32%), Gaps = 16/225 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ + D ++ +L+ A G + ++ I +TE+ K A Sbjct: 16 ERLRKIWDEKRKQLSLSQEKAADILGFKTQGAVSQLLNAKI-----ALNTENTLKFAALL 70 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIR 124 ++ R+ F + + + + Sbjct: 71 QVPAEEINPDLSDLLRSIRTHTPGNRRNLFEKYYEYPLLSCVQAGAFSMDDFSYTAKDAI 130 Query: 125 SPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + + SM P + +G +++++ ++ GD + + Sbjct: 131 KWISTTTKASDRSFWLEVKGHSMTAPQGGKPSFPEGMLILVDPEREIEDGDFCVARMNGD 190 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K I G++ L LN + + + +++ +++ SQ Sbjct: 191 EFTFKRFIRESGKAY-LEPLNPRFDMIECN-ENCQFVGKVI-KSQ 232 >gi|114320255|ref|YP_741938.1| SOS-response transcriptional repressor, LexA [Alkalilimnicola ehrlichii MLHE-1] gi|122311965|sp|Q0A9N9|LEXA_ALHEH RecName: Full=LexA repressor gi|114226649|gb|ABI56448.1| SOS-response transcriptional repressor, LexA [Alkalilimnicola ehrlichii MLHE-1] Length = 208 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 60/209 (28%), Gaps = 32/209 (15%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++ + I R P + + R G E R + + ++ Sbjct: 10 QQQVLDQIRGHIRRTGYPPTRAEICRALGFRSP-------NAAEAHLRALARKGAIEL-- 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + S G G G+ + Sbjct: 61 ------------------RPGTSRGIHLPEEAAANDSDGLPVVGRVAAGSPILAEAHIDR 102 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + D + + SM GD+L+++ + G ++++ ++ Sbjct: 103 HYRVDTHLFSPRPDYLLRVRGMSMRDAGILDGDLLVVHRTHEARNGQIVVMR-LHDEVTV 161 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L + G + L++ N YP V+++ Sbjct: 162 KRL-EQHGSRLRLLAENPDYPTIEVDLTR 189 >gi|116013510|dbj|BAF34577.1| SOS repair repressor [Deinococcus radiodurans] Length = 248 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 63/217 (29%), Gaps = 25/217 (11%) Query: 13 IDRMAERHNLT-PSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAATNETI 69 I + NL+ A AG+ TS + R G PS +++ K+ A ++ Sbjct: 38 IAERMRQLNLSTVKDFADYAGIGRTSIHDLVRGRTTTSGTWTKPSFDTLTKLAVALDKPT 97 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +LL L + + + G + Sbjct: 98 HELLYLIDPEAPGANLMFDVQQVPVYIAGQ-----------VGAGPQQLWESSDVVYVER 146 Query: 130 IYAIQTQDTRHKTQDTSML---PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 +A SM GD++I++ + ++ + + V K L Sbjct: 147 QFAENRDLIAFTVVGDSMAGGRHPIHDGDVVIVDQRVGGEVNFPVVARLKDDGHVVKRLR 206 Query: 187 SRRGRSIDLMSLNCCY---PVDTVEMSDIEW-IARIL 219 I L S N + + I + R++ Sbjct: 207 ---PGGI-LDSANPDFVDPDTSIIAPDRIAHLVGRVV 239 >gi|283954007|ref|ZP_06371533.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 414] gi|283794490|gb|EFC33233.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 414] Length = 222 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 24/223 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M +++ E + + L +A++ G++P +FN K Sbjct: 14 MQM---QEVIEKLKDILASEGKRELKTKDIAKELGINPDTFNSMKFRNPIPYP------Q 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I L N +I + + + +I Y + GG G + Sbjct: 65 ILNFLQERNISINYFFYGSSPKEQLESENKYKILKFYKTNASLGG---------GGINDL 115 Query: 118 VGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + I + SM PL + G I I++ + Sbjct: 116 IDYSKLIIDEKLLSFFGSKNCEFITCYGESMEPLIKDGSICIVDRNKTFKDKSICV-INT 174 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I ++ Sbjct: 175 RDGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 216 >gi|254240157|ref|ZP_04933479.1| hypothetical protein PA2G_00798 [Pseudomonas aeruginosa 2192] gi|126193535|gb|EAZ57598.1| hypothetical protein PA2G_00798 [Pseudomonas aeruginosa 2192] Length = 265 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 56/247 (22%), Gaps = 37/247 (14%) Query: 8 KIWEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + AI +T +A GL T+ + + + + E+ Sbjct: 17 QALNAIYKAKKRELGITQEKIA-LEGLGATTQSAASHYLTGKN--ALNAEAAAVFARYLE 73 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------- 119 + + + P+ P + Sbjct: 74 IQVRDFSPRLAEEIERMATTVRPKPVANTRGDLEPIPVWDDGDPLDANEVEIPYFNEIQI 133 Query: 120 ------------------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 P +G+ SM PL G I+ ++ Sbjct: 134 AAGDGRLPDLEQAKRKIRFPRTVLRESGV--DPKNSVCVNVTGNSMEPLIADGAIIGVDL 191 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE-----WI 215 ++ + + K + G I L S N YP + + I Sbjct: 192 SVSTITDGEIYALKHDDMLRVKFVYRLPGGGIRLRSFNRDEYPDEEYTRDQMRESNLSII 251 Query: 216 ARILWAS 222 + W S Sbjct: 252 GWVFWWS 258 >gi|260550022|ref|ZP_05824237.1| peptidase S24 S26A and S26B [Acinetobacter sp. RUH2624] gi|260407014|gb|EEX00492.1| peptidase S24 S26A and S26B [Acinetobacter sp. RUH2624] Length = 223 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 57/218 (26%), Gaps = 6/218 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNE 67 + + + + T + +A + ++ + P + Sbjct: 3 LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTT 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRS 125 + T + + F ++ + +P S Sbjct: 63 GNTEDSFRESDVFSPTVVSSDVVDQYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPAS 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 Q K + SM + GD++ ++ + + G+ + K + Sbjct: 123 FFKEKRVPQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMIKQI 182 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 S+ L SLN + V + + + R W Sbjct: 183 FKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220 >gi|260424652|ref|ZP_05732822.2| transcriptional repressor LexA [Dialister invisus DSM 15470] gi|260402702|gb|EEW96249.1| transcriptional repressor LexA [Dialister invisus DSM 15470] Length = 149 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 10/115 (8%) Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 VF +P T + SM+ ++GD LI+ Sbjct: 38 DPVFADEQIETVFPLPAELVGS------DTNCFMLVVRGDSMINAGIQEGDYLIVAEQET 91 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD ++ D K I L N Y D++ +++ Sbjct: 92 ARNGDIVVALVGNDDATVKRFFR-EADHIRLQPENDDYEPII--SRDVKIRGKVI 143 >gi|329947100|ref|ZP_08294476.1| repressor LexA [Actinomyces sp. oral taxon 170 str. F0386] gi|328526277|gb|EGF53294.1| repressor LexA [Actinomyces sp. oral taxon 170 str. F0386] Length = 239 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 15/220 (6%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESIFKILA 63 ++EA+ H PS + ++ GL S K + +E R P+ + + Sbjct: 20 VYEAVCEAIAAHGYPPSLREIGKQVGLTSPSSVKHQLDKLEHLGLVRRNPNRP---RAME 76 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + +L + G G Sbjct: 77 VIGAHHDAGPRGDVPVDVSSAVSLEAPRVLGIEDGDAVAVPLVGRIAAGAPILAEQDITD 136 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL---LIKPRTGD 179 Q + + SM GD +++ S G+ + + Sbjct: 137 VMALPRRLTGQGELFMLEVHGDSMIEAAICDGDWVVVRSQPDAANGEIVAAMVEDVDGAS 196 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL R L+ N Y + + +++ Sbjct: 197 ATVKVLSRR-DGHQWLLPRNSSYAPI--DGDRATIMGKVV 233 >gi|237743762|ref|ZP_04574243.1| LexA repressor [Fusobacterium sp. 7_1] gi|229432793|gb|EEO43005.1| LexA repressor [Fusobacterium sp. 7_1] Length = 235 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 10/218 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I + E + + + K +D + ++ + G+ R + + K+ A Sbjct: 14 KEIGNFLKNRREELGYSTNQMLMKTDIDKSDISRIEN----GKKRKLNPIYLKKLAKALK 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I +L + E K+ + + + + + Sbjct: 70 LDIIELFKMVGFLDEDIEIHTKKESFE-IKNAMRKIIYLPVYGKASAGNGYLNLEQEIYK 128 Query: 127 HNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + K + SM P +G+ ++N +++ + + K + Sbjct: 129 MPILDEDFPDGCFFVKIEGNSMEPTIIEGEFALVNPNDIEYEKNKIYVVTYDDESFIKRM 188 Query: 186 ISRRG-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + + L S N Y +++ ++ R++ Sbjct: 189 VVDEKTGIVILKSDNKEYDDILIDIEKQEYLKINGRVI 226 >gi|195939798|ref|ZP_03085180.1| putative repressor protein [Escherichia coli O157:H7 str. EC4024] gi|261226405|ref|ZP_05940686.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257983|ref|ZP_05950516.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK966] Length = 214 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 15/209 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + LT L + +G+ + ++ E P ++++ K+ A Sbjct: 2 ESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T LL S + + + Y + F T + + Sbjct: 57 TTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITTFFDVEE 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181 + ++ + S P G +IL G + + + Sbjct: 117 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLKNEPSMT 172 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K L+ G+ + L LN Y + Sbjct: 173 IKKLV-IDGKLVYLSPLNPRYQSSLLTPE 200 >gi|15832020|ref|NP_310793.1| repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254793674|ref|YP_003078511.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] gi|13362234|dbj|BAB36189.1| putative repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254593074|gb|ACT72435.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] Length = 215 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 15/209 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + LT L + +G+ + ++ E P ++++ K+ A Sbjct: 3 ESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T LL S + + + Y + F T + + Sbjct: 58 TTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITTFFDVEE 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181 + ++ + S P G +IL G + + + Sbjct: 118 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLKNEPSMT 173 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K L+ G+ + L LN Y + Sbjct: 174 IKKLV-IDGKLVYLSPLNPRYQSSLLTPE 201 >gi|329768224|ref|ZP_08259725.1| hypothetical protein HMPREF0428_01422 [Gemella haemolysans M341] gi|328837423|gb|EGF87052.1| hypothetical protein HMPREF0428_01422 [Gemella haemolysans M341] Length = 214 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 24/205 (11%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG- 80 ++ S L+++ + +S + + G + I K+L + + D Sbjct: 17 ISQSELSKRTHIGKSSISTYLKGGYI--PKQDKIYLIAKVLDVSESYLMGWTDEKERKQT 74 Query: 81 -RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ--- 136 + P++ G GN + + + Sbjct: 75 PPPSFNLSDIKPIVKTVKIPLIGVIC-----AGNGIYADE------NLERMLVVDSNTIT 123 Query: 137 -DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV--AKVLISRRGRS 192 D + SM+ GDI G G+ K + + G Sbjct: 124 ADYALTVKGDSMIDENILNGDIAFFEKTFNFESGKI-YACIVNGENTGAIKKVHQQ-GNK 181 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIAR 217 I L S N Y ++ D+ + + Sbjct: 182 IILESANKDYTPQIYDIDDVHIVGK 206 >gi|319947513|ref|ZP_08021745.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319746453|gb|EFV98714.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 227 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 18/228 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M F KK + LT + + + +++ + E ++ + + K Sbjct: 1 MQMFDAKK----LKDRRLELGLTQAQVYESLEISRKTYSSWENGLAEPHDK--NLRRLAK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF--------PPSGSGGFFDSGVFPTG 112 L+ + F+ T +K++ LL S S G Sbjct: 55 HLSVKEDYFVDKSSALFTYPLLTPPHQKKVDLLASQLLAEQEKVVSLIPYRVLSIDLAAG 114 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + IQ SM P Y G + ++ G + Sbjct: 115 HGHTFYDNETDYETVYFDQEIQHD-FASWVSGDSMEPSYPNGSVALMKQTGFDYDG-AVY 172 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L S+N Y + + + ++ Sbjct: 173 ALMWNGKTYIKKVYREEEG-LRLESINPAYDDLFAPYEDEPKIVGIVV 219 >gi|15802455|ref|NP_288481.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 EDL933] gi|12516142|gb|AAG57035.1|AE005422_10 putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. EDL933] Length = 196 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 62/202 (30%), Gaps = 15/202 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + LT L + +G+ + ++ E P ++++ K+ A Sbjct: 3 ESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T LL S + + + Y + F T + + Sbjct: 58 TTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITTFFDVEE 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181 + ++ + S P G +IL G + + + Sbjct: 118 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLKNEPSMT 173 Query: 182 AKVLISRRGRSIDLMSLNCCYP 203 K L+ G+ + L LN Y Sbjct: 174 IKKLV-IDGKLVYLSPLNPRYQ 194 >gi|332703667|ref|ZP_08423755.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus str. Walvis Bay] gi|332553816|gb|EGJ50860.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus str. Walvis Bay] Length = 251 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 61/237 (25%), Gaps = 30/237 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ + + A + + + PS + + K + Sbjct: 19 KRLQQVIDNLGVEKKAFALAGDIKQPTLTAYLNAQSQ-----PSQDVVAKWILVYGINAN 73 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF-----------------PPSGSGGFFDSGVFPTGN 113 LL R + P P G G Sbjct: 74 WLLTGEGPMFREERAEAASKPAYQIAPFGPDGQTRRTQVVRGPDDQELGAIIEVHAEAGP 133 Query: 114 KWN---TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGD 169 P YA + ++M PL +G ++ +N + GD Sbjct: 134 GQVKTRWEPDPIGTVCIPPEYAKPG-LFGLHIKGSAMEPLINRGALVGVNAEDRKFVSGD 192 Query: 170 RLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIE--WIARILWASQ 223 + + + L L S++ +P + + E + R++W Q Sbjct: 193 IYAVFIPYEGLTTRRLFLDPDTSVYVLRSIHPDHPDMELPVDKSENLIVGRVVWVMQ 249 >gi|300825209|ref|ZP_07105298.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|300522328|gb|EFK43397.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|323968639|gb|EGB64044.1| helix-turn-helix protein [Escherichia coli M863] Length = 216 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 18/215 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + R+ + LT L + +G+ + ++ E P ++++ K Sbjct: 1 MMM---ESLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSK 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A T LL S T + + Y + F T + + Sbjct: 53 LAQALGTTESYLLYGVSSTEPTLVQNNSGTQIPYLSWGEAISFLILEGEKTMGNADRITT 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----P 175 + ++ + S P G +I+ + G + + Sbjct: 113 FFDVKEGDFAVSMPDD----TMHNPSGSPSIPVGATVIMRPREKYKNGSIVAVIVPDPLT 168 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 + K L+ G+ + L LN Y + Sbjct: 169 NEPSMTIKKLV-IDGKLVYLSPLNPRYQSSLLTPE 202 >gi|229589083|ref|YP_002871202.1| LexA repressor [Pseudomonas fluorescens SBW25] gi|312959633|ref|ZP_07774150.1| LexA repressor [Pseudomonas fluorescens WH6] gi|229360949|emb|CAY47809.1| LexA repressor [Pseudomonas fluorescens SBW25] gi|311286350|gb|EFQ64914.1| LexA repressor [Pseudomonas fluorescens WH6] Length = 202 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I I R + + P + +A + G + + E Sbjct: 1 MLKLTPRQAEILAFIKRCLDDNGYPPTRAEIALELGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E K E L G G Sbjct: 45 EHLKALARKGAIEMTPGASRGIRIPGFEAKADESTLPII-----------GRVAAGAPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E N + D + SM + GD+L +++ + G ++ + Sbjct: 94 AQQHVEESCNINPTFFHPRADYLLRVHGMSMKDVGIFDGDLLAVHTTREARNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G + L++ N + V + D Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVNLKD 187 >gi|15673253|ref|NP_267427.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724246|gb|AAK05369.1|AE006359_7 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406810|gb|ADZ63881.1| transcriptional repressor [Lactococcus lactis subsp. lactis CV56] Length = 252 Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 63/242 (26%), Gaps = 38/242 (15%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------ 63 + + ++ + LT S LA K G+ ++ ++ ++ P+ E + K+ Sbjct: 4 GQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQ-----KSTNPTLEILEKLADIYDLPI 58 Query: 64 --------------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + + + K E Y S Sbjct: 59 QELIKETDNNAEKQLIDNYRSLTGEQQESVINFTDFLIEQNKTEIINLKTYRRSSLDYAI 118 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 + G + + D + + SM P + I Sbjct: 119 VEDEELSAGFG-QSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLHTG 177 Query: 164 QVNCGDRL-LIKPRTGD--IVAKVLISRRGRSIDLMSLNCC--YPVDTVEMSD-IEWIAR 217 GD + + G+ + K + + SLN Y + D I Sbjct: 178 FGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGP 237 Query: 218 IL 219 ++ Sbjct: 238 VV 239 >gi|254518938|ref|ZP_05130994.1| SOS-response transcriptional repressor [Clostridium sp. 7_2_43FAA] gi|226912687|gb|EEH97888.1| SOS-response transcriptional repressor [Clostridium sp. 7_2_43FAA] Length = 201 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 60/221 (27%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 +I+E + E PS + L TS KR +G R P+ Sbjct: 7 KQLEIYEFLKIYTENKGYPPSVREICDAVNLRSTSTVHGHLKRLEKKGLIRRDPTKPRAL 66 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ +N L + T N +T Sbjct: 67 EIMETSNMKKEMLNIPLVGRVTAGTP----------------------ILATENIEDTFP 104 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P HN + K SM+ GD I+ A GD ++ Sbjct: 105 IPIDYIKHN------EELFMLKVTGNSMINAGIHDGDYAIIEKAPTAKNGDIVVALI-EN 157 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K + I L N V D + +++ Sbjct: 158 DATIKRFFKEKD-HIRLQPENDALSPIIV--EDCIILGKLV 195 >gi|171915361|ref|ZP_02930831.1| phage repressor [Verrucomicrobium spinosum DSM 4136] Length = 283 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 53/212 (25%), Gaps = 9/212 (4%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESIFKILAATNETICQ 71 + E + LA+ G + G R ++ + + Sbjct: 64 RKAREAKGWSIKDLAKATGYSIGVLQALEEGNGRGSERQIKKVATALDVPFEDLMQGVEP 123 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 T + W + H Sbjct: 124 GFIDESGLTGTLGASPNVELGPGIKTARYVPLISFAQAGKMGSWEDAAY--EYTGHIAFD 181 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK---PRTGDIVAKVLISR 188 + + SM+P+ GD+ IL + G+ ++ + G ++ KV + Sbjct: 182 MTDPKAFGVTIRGDSMVPVINDGDVAILVPSSAPRGGEVVVARLSEEAGGGVMCKVYTPK 241 Query: 189 RGR-SIDLMSLNCC-YPVDTVEMSDIEWIARI 218 + L S N +P D W+ + Sbjct: 242 DAGAKVVLTSYNSAVHPPLEFRREDFVWLYPV 273 >gi|325916033|ref|ZP_08178323.1| SOS-response transcriptional repressor, LexA [Xanthomonas vesicatoria ATCC 35937] gi|325537709|gb|EGD09415.1| SOS-response transcriptional repressor, LexA [Xanthomonas vesicatoria ATCC 35937] Length = 250 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I I + + + + +AR G + E++ + Sbjct: 43 TQHAILTLIADRIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 90 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G + PL + P G + Sbjct: 91 AIRRVPGQARGIRLAGQGAQSRTPPVAEPLRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 148 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 149 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 205 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 206 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 234 >gi|285017961|ref|YP_003375672.1| lexa repressor protein [Xanthomonas albilineans GPE PC73] gi|283473179|emb|CBA15685.1| probable lexa repressor protein [Xanthomonas albilineans] Length = 211 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 59/210 (28%), Gaps = 23/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I + I E + + + +AR G + + + E I Sbjct: 6 TQQAILDLIAERIEHEGVPPSQTEIARALGF---------KGVRAAQYHLEALEQAGAIR 56 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + L T + +L P G G+ V Sbjct: 57 RVPGQ-ARGIRLLGGGGTPTAPPQVDNADILRLPVLGRVAAGSPIGADIGSDDFVV---- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ D K Q SM GD++ ++ G ++ + +I Sbjct: 112 ----LDRVFFSPAPDYLLKVQGDSMRDEGIFDGDLIGVHRTRDARSGQIVVARI-EEEIT 166 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 167 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 195 >gi|26990477|ref|NP_745902.1| putative phage repressor [Pseudomonas putida KT2440] gi|24985450|gb|AAN69366.1|AE016573_11 repressor protein-related protein [Pseudomonas putida KT2440] Length = 289 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 7/204 (3%) Query: 22 LTPSGLARKA---GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 L+P A+ A G + S + + + S E+ ++LAA E L Sbjct: 83 LSPGEHAQAAVEPGDNKLSAADLVKQMLARSGKGISEETRQRLLAAAQEPADATLLEAEP 142 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 E I + GG + P ++ Sbjct: 143 LRPGLVGDEVWIAHYDVRAAMGGGQIPHDY--PEMFKDVRVSPSHLRELGVTFSEHHHLK 200 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM P R D LI++ +I+ GD + I K L +++S Sbjct: 201 MVTGWGQSMEPTIRHRDPLIVDVSIREFVGDGIYFFSWGDHIYIKRLQIADEDHFEMISD 260 Query: 199 NCCYPVDTVEMSDIEWIARI--LW 220 N + + + AR+ +W Sbjct: 261 NSRHKDRMIRREETYIQARVLLVW 284 >gi|118579995|ref|YP_901245.1| SOS-response transcriptional repressor LexA [Pelobacter propionicus DSM 2379] gi|118502705|gb|ABK99187.1| SOS-response transcriptional repressor, LexA [Pelobacter propionicus DSM 2379] Length = 217 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 56/228 (24%), Gaps = 27/228 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54 M S K + + + + + P+ +AR + T + +G R Sbjct: 1 MEPLSPRQKDVLDFLREFLDSNGYPPTLREIARHLDISGTVAVVRHLEALEKKGWIRR-- 58 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + ++ G G Sbjct: 59 --------------QPGAFRSISLVAEKAVLYPLDEEGIFAADQLPVSLPIVGTVRAGTP 104 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 E + + + SM GD++++ + GD ++ Sbjct: 105 EIPREDIEGYLSLDRNIVASGGSFFLRIKGDSMKNAGMLPGDLVLIRPQPTADNGDVVVA 164 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL 219 G+ K I L N + + +D+ I +++ Sbjct: 165 LVD-GEATVKRFFREE-EMIRLQPENELLEPILIADDSADVTVIGKVV 210 >gi|319761962|ref|YP_004125899.1| peptidase s24/s26a/s26b, conserved region protein [Alicycliphilus denitrificans BC] gi|317116523|gb|ADU99011.1| Peptidase S24/S26A/S26B, conserved region protein [Alicycliphilus denitrificans BC] Length = 238 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 55/217 (25%), Gaps = 5/217 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + +R L + G ++ + ++ + L Sbjct: 18 QIGQRLKEERKRLGLKATDFESHGGWPASTIYGWESGKASPKS-EFYANTQELGLDLQYI 76 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + S + + L + + + V V Sbjct: 77 ITGRRTAGLPSGPAPAPAGDSDSISLPLLSATGSMGNGNDLITEDVILGEVPVSRKWLAL 136 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 N + SM R GD I+++ Q + + + K + Sbjct: 137 NLPGSRPEALQLVHAYGDSMGDTLRSGDFAIVDTDYQFADVSGVYVLQANNQLFIKRISR 196 Query: 188 RRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL--W 220 + + ++ S N V + R++ W Sbjct: 197 KLDGTHEITSDNPNVRTVEVLDGSQQVRICGRVVYGW 233 >gi|28210983|ref|NP_781927.1| LexA repressor [Clostridium tetani E88] gi|44888102|sp|Q895H6|LEXA_CLOTE RecName: Full=LexA repressor gi|28203422|gb|AAO35864.1| lexA repressor [Clostridium tetani E88] Length = 200 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 36/220 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 + I+E I PS + L TS KR +G R T+ + Sbjct: 6 KQEAIYEFIKEQLREKGYPPSVREICNAVELRSTSTVHGHLKRLEEKGVIRRDPTK--PR 63 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + +I + + P + N +T + Sbjct: 64 AIEVLEHSIMKKEMV-------------------DIPVVGTVTAGKPILAVENIEDTFAL 104 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + Q K + SM+ GD+ I+ V G+ ++ Sbjct: 105 PINYVRN------KKQLFALKIKGDSMIDTGILDGDLAIVEKNNSVLNGEIVVAL-LGDR 157 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V+ E I +++ Sbjct: 158 ATVKRFFKEKD-YIRLQPENETMEPIIVK--QCEIIGKVV 194 >gi|169633856|ref|YP_001707592.1| putative transcriptional regulator; putative phage-related protein [Acinetobacter baumannii SDF] gi|169152648|emb|CAP01645.1| putative transcriptional regulator; putative phage-related protein [Acinetobacter baumannii] Length = 223 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 55/218 (25%), Gaps = 6/218 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNE 67 + + + + T + +A + ++ + P + Sbjct: 3 LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTT 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRS 125 + T + F ++ + +P S Sbjct: 63 GNSEDSFRESDVFSPTVVNNDAADQYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPAS 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 Q K + M + GD++ ++ + + G+ + K + Sbjct: 123 FFKEKRVAQECMRIIKAKGDGMTDYIKDGDLVGIDISQTEVIDGEIYAFYFAGEGMIKQI 182 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 S+ L SLN + V + + + R W Sbjct: 183 FKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220 >gi|307297531|ref|ZP_07577337.1| transcriptional repressor, LexA family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916791|gb|EFN47173.1| transcriptional repressor, LexA family [Thermotogales bacterium mesG1.Ag.4.2] Length = 208 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 26/221 (11%) Query: 1 MT-SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TES 57 MT + KKI E I+ + + PS R R + ES Sbjct: 1 MTLTEKQKKILEYIENFIKLYGYPPS------------IRDICRDFEISSPRGVAKHLES 48 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + K + + + + S ++ + +++ +L + + G + + Sbjct: 49 LEKKGYIERTGVSRGIRVLRSPDGSSLEPGEDVVMLPVIGNVAAG---EAIQAVQTEDEK 105 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + VP Y K SM GD +I+ N G+ ++ Sbjct: 106 IPVPLWMIRRGFEY------YMLKVTGNSMIESHIVNGDFVIIRKQEWANNGEIVVALID 159 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 K G I L+ N VE + ++ R Sbjct: 160 DEYATLKKY-ENEGPKIRLVPSNPEMLPIVVEANRVKIQGR 199 >gi|50914507|ref|YP_060479.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|40218541|gb|AAR83195.1| phage repressor protein [Streptococcus pyogenes] gi|50261586|gb|AAT72354.1| UmuD/MucA-like protein [Streptococcus pyogenes] gi|50903581|gb|AAT87296.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 229 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 27/232 (11%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH + + + L+ + +A + + ++++ + + + ++ IL Sbjct: 1 MFSHGR----LKQRRLEIKLSQTAIANQLNVHRSAYHNWENGRNTPNQK--NLTALAAIL 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL-----------YFPPSGSGGFFDSGVFPT 111 ++ + + + + + P S Sbjct: 55 DVPVTYFESEYNIVNNYLQLSPDNQLKAEEYVEELLLSQQTSNVIPLFSVQVLSDIQLSA 114 Query: 112 GNKW---NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G + I S D + SM P+Y+ G++ ++ S G Sbjct: 115 GLGEGFFDEFETETIYSDEEQY----GYDIAAWIEGDSMEPVYKSGEVALIRSNGFDYDG 170 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + + K L ++SLN YP + + + ++ Sbjct: 171 -AVYALSWNDSVYIKKLYRDEDG-FRMVSLNKDYPEKFIPYEDEPRIVGLVV 220 >gi|21242488|ref|NP_642070.1| LexA repressor [Xanthomonas axonopodis pv. citri str. 306] gi|44888837|sp|P60511|LEXA2_XANAC RecName: Full=LexA repressor 2 gi|44888838|sp|P60512|LEXA_XANCI RecName: Full=LexA repressor gi|3420882|gb|AAC31950.1| LexA [Xanthomonas citri] gi|21107937|gb|AAM36606.1| LexA repressor [Xanthomonas axonopodis pv. citri str. 306] Length = 213 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 53/210 (25%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + +AR G R E++ Sbjct: 6 TQQAILALIAERIDADGVPPSQTEIARAFGFK------------GIRAAQYHLEALEHAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G T + P G + Sbjct: 54 AIRRVPGQARGIRLAGQGAQTRTAPVSEVARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|269926117|ref|YP_003322740.1| SOS-response transcriptional repressor, LexA [Thermobaculum terrenum ATCC BAA-798] gi|269789777|gb|ACZ41918.1| SOS-response transcriptional repressor, LexA [Thermobaculum terrenum ATCC BAA-798] Length = 215 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 62/219 (28%), Gaps = 24/219 (10%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I + + + + P+ + R GL TS L Sbjct: 9 KQQQILSFLQEFIQEYGIPPTVREIQRSLGLSSTSVVDY-------------------NL 49 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 E + S G + K+ E + P G P V Sbjct: 50 KQLEEKGYITRNKNISRGISLPFKKVEENVTTIPVVGVIAAGSPIEVPEDLSDPAVWADT 109 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDI 180 I ++ + + + SM+ GD++I+ A G+ + + + Sbjct: 110 IEVNNSLLNLKSDGLFALRVKGHSMVDALIDDGDLIIMRHANTAENGETVAVWLEKEKAT 169 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G I L N V DI+ +++ Sbjct: 170 TLKKFY-HEGDRIRLQPANITMQPIYVSPDDIQIQGKLV 207 >gi|313499032|gb|ADR60398.1| Prophage PSPPH03, Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 293 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 67/266 (25%), Gaps = 55/266 (20%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSG------------------LARKAGLDPTSFNK---- 40 S KKI A+ +TP+ LAR + F+ Sbjct: 30 KLSQKKI-------ADEAGMTPAAVNLYFKGLNPLNAKFAAVLARLLEVPVEQFSPRLAD 82 Query: 41 --------------SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86 K+ E + K+ + I + + R + Sbjct: 83 EIRSLRSLPAGDQEHKKGAAEKVMAMLKQHAGKKLDEDAQQKIAAAVAESLVEDRPSNVV 142 Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGV-------PEIRSPHNGIYAIQTQ 136 + L G+ + V + Y Q+ Sbjct: 143 SADFSGLKVKKDEIFIPQYDIRASMGHGQVPPDYTEVMRNVIVKESVLHEKGVTYTSQSA 202 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 SM D LI++ + GD + + G + K L L+ Sbjct: 203 LAMIFGWGQSMEGTINDKDPLIVDRGVNEFVGDGIYVLTWHGHLYIKRLQFFDEDHFWLI 262 Query: 197 SLNCCYPVDTVEMSDIEWIARI--LW 220 S N + + D+ A++ +W Sbjct: 263 SDNEKHKDQQARIDDVTIHAKVLLIW 288 >gi|270265288|ref|ZP_06193549.1| hypothetical protein SOD_m00200 [Serratia odorifera 4Rx13] gi|270040692|gb|EFA13795.1| hypothetical protein SOD_m00200 [Serratia odorifera 4Rx13] Length = 239 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 21/229 (9%) Query: 2 TSFSHKKI--WEAIDRMAERH----NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 S + +++ + + E +T +A + G+ + + Sbjct: 8 KSLTTEQLEDAARLKALYESKKKSLGVTQYTIADELGITQGAVGHYLNGRN-----ALNL 62 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 +I ++ + +E P + S + G Sbjct: 63 SVAAAFAKILQVSIADFSPSIGNEAQKILSREPSNIKYIGPYNKSREYPLISWVQAGAWA 122 Query: 116 NTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCG 168 + + E+ + I + + + SM +G ++++++ G Sbjct: 123 EAIEPYTLDEVDEWYESDVKIFGKAFWLRVEGDSMTAPTGVSVPEGTLVLVDTGRDAING 182 Query: 169 DRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++ + K LI G+ L LN +P+ + + + I Sbjct: 183 SLVIAKMVDANEATFKKLIIDGGQKY-LKGLNPAWPMKEINGN-CKIIG 229 >gi|323176678|gb|EFZ62268.1| repressor protein CI [Escherichia coli 1180] Length = 239 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 71/225 (31%), Gaps = 16/225 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ + D ++ +L+ A G + ++ I +TE+ K A Sbjct: 16 ERLRKIWDEKRKQLSLSQEKAADILGFKTQGAVSQLLNAKI-----ALNTENTLKFAALL 70 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIR 124 ++ R+ F + + + Sbjct: 71 QVPAEEINPDLSDLLRSIRTHTPGNRRNLFEKYYEYPLLSCVQAGAFTMDDFSYTQKDAI 130 Query: 125 SPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + + SM P + +G +++++ ++ GD + + Sbjct: 131 KWISTTTKASDRSFWLEVKGHSMTAPQGGKPSFPEGMLILVDPEREIEDGDFCVARMNGD 190 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + K I G++ L LN + + + +++ +++ SQ Sbjct: 191 EFTFKRFIRESGKAY-LEPLNPRFDMIECN-ENCQFVGKVI-KSQ 232 >gi|260854614|ref|YP_003228505.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|257753263|dbj|BAI24765.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] Length = 215 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 15/209 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + LT L + +G+ + ++ E P ++++ K+ A Sbjct: 3 ESLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T LL S + + + Y + F T + + Sbjct: 58 TTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITTFFDVEE 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181 + ++ + S P G +IL G + + + Sbjct: 118 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLKNEPSMT 173 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K L+ G+ + L LN Y + Sbjct: 174 IKKLV-IDGKLVYLSPLNPRYQSSLLTPE 201 >gi|222875118|gb|EEF12249.1| predicted protein [Populus trichocarpa] Length = 220 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 44/101 (43%) Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 V + EI + I+ + + + +SM P G+ +++ + GD + I+ + Sbjct: 7 VDIEEIHVGYIDIFTTDPKAFCLRVKGSSMEPRIHSGEFVLVEPQSPFSNGDDVFIRTKD 66 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G + K+L ++ S+N + + + ++E + + Sbjct: 67 GKNMIKILDYQKDGEYRFSSINNDHKPFNLAIDEVELVYYV 107 >gi|312878550|ref|ZP_07738425.1| LexA repressor [Caldicellulosiruptor lactoaceticus 6A] gi|311794675|gb|EFR11129.1| LexA repressor [Caldicellulosiruptor lactoaceticus 6A] Length = 381 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 I + + K + SM + GDI I+ D ++ G+I K Sbjct: 286 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVI-AWLDGEITVKRFCKM 344 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ L+ N Y ++ ++ + +++ Sbjct: 345 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 374 >gi|239502427|ref|ZP_04661737.1| Repressor protein C2 [Acinetobacter baumannii AB900] Length = 232 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 15/221 (6%) Query: 8 KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + +AID + E + + L + ++ R ++ K + N Sbjct: 10 NLRKAIDALIESGKFKSDAAFCEHYDLSTSHISQMINGHGSFGERAAR--NLEKKVGWPN 67 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + S + L P + N P S Sbjct: 68 GYLDLENQEDQSPIVSESNVGPTKNNLRTIPLLDYVQAGLFHDVGYDGIN----PIGESY 123 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD---IVAK 183 K + SM P ++ GD ++++++++ G ++ + K Sbjct: 124 TTYQGYKPECVFSLKVEGNSMSPEFKAGDEIVVDASLEPKPGSLVIAQEVQHGIARTTFK 183 Query: 184 VLI-----SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++L+ LN YP +I I ++ Sbjct: 184 KYRVIGINEFGVDVVELVPLNPDYPTYNSTQIEISIIGVVV 224 >gi|70731299|ref|YP_261040.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345598|gb|AAY93204.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens Pf-5] Length = 235 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 60/217 (27%), Gaps = 15/217 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +T LA + G+ + R P E + ++L ++ Sbjct: 22 VKANMKGRKVTQEKLAERLGMSQGGIGHWLS-----KRRQPKIEDMNRVLEEIGMGFLEV 76 Query: 73 LDLPFSDG---RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + E LL + + Sbjct: 77 ALVVREKPLLGDDGEPLADGPALLNKYNPYFRYPVSDWRVAGEVREDGQPAYVPERYELS 136 Query: 130 IYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKV 184 Y + +M+ + +++++ AI G ++ P + + + + Sbjct: 137 DYQARGAAFWLVVVGDAMIAPSGLSISQDMLILVDPAIGAEPGKLVVVQCPGSDEAIFRK 196 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 L+ + G L+ LN YP I ++ A Sbjct: 197 LV-QEGGLRYLVPLNPTYPKMLYS-DKCRIIGVVVQA 231 >gi|212711485|ref|ZP_03319613.1| hypothetical protein PROVALCAL_02558 [Providencia alcalifaciens DSM 30120] gi|212685941|gb|EEB45469.1| hypothetical protein PROVALCAL_02558 [Providencia alcalifaciens DSM 30120] Length = 253 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 72/220 (32%), Gaps = 20/220 (9%) Query: 6 HKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +K + + A+ + + +A K GL P + +K R + + ++ Sbjct: 35 REKFASRLAQAAKDAGYSEHGKATEIAEKLGLTPKAVSKWFNAESI--PRQDAMNKLAEL 92 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L + F ++ + + P G ++ P + Sbjct: 93 LRVEVVWLQHGELAGFDSNVSSPRPYRPAPKYPVISWVQAGSWNEACEP-------YTLD 145 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPR 176 +I + +Q + + SM +G ++++++ + ++ Sbjct: 146 QIDEWYESEVHVQGAAFWLRVEGDSMTASSGQSVPEGSLVLVDTGREPINNSLVIAKLTE 205 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + + K L+ G+ L LN +P+ + + + I Sbjct: 206 SNEATFKKLVIDGGQKF-LKGLNPAWPITPINGN-CKIIG 243 >gi|332291433|ref|YP_004430042.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169519|gb|AEE18774.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 256 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 69/217 (31%), Gaps = 16/217 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + E H+ T + A K G+ ++ +R + S + I ++L N Sbjct: 11 RRFKEVREDHDFTQAEFADKLGIKNST-ADIERGRTK-----LSGQVITELLRLFNINPL 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + T+K + ++ + Sbjct: 65 WIYGYSKQKHLNTDKSDVSPKVV-VVDKDDNENMVLVNQKAAAGYPNNIADVEWYQKLPA 123 Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVA 182 + + + SM+P +R D ++ ++ +++ + +V Sbjct: 124 FDFPIPQYRNATYRGFQIEGDSMMPSFRPDDWVLAKGVESLDYASDNKVYVIVLQDAVVV 183 Query: 183 KVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L + + L+S+N Y V +SDI+ I ++ Sbjct: 184 KKLQKMPDSKKVLLISINEEYVPYEVAVSDIQEIWQV 220 >gi|157414969|ref|YP_001482225.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 81116] gi|157385933|gb|ABV52248.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 81116] gi|307747607|gb|ADN90877.1| Putative peptidase [Campylobacter jejuni subsp. jejuni M1] Length = 209 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 24/223 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M +++ E + + L +A++ G+ P +FN K Sbjct: 1 MQM---QEVIEKLKDILASEGKCNLKTKDIAKELGIHPDTFNSMKFRNSIPYP------Q 51 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I L N +I + + + +I LY + GG G + Sbjct: 52 ILNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDL 102 Query: 118 VGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + I + + SM P+ + G I +++ + Sbjct: 103 IDSSDLIIDEKVLNFFGSKECEFITCYGESMEPIIKDGSICVIDRNKTFKNKSICV-INT 161 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I ++ Sbjct: 162 RDGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 203 >gi|86149224|ref|ZP_01067456.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840582|gb|EAQ57839.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] Length = 209 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 22/222 (9%) Query: 1 MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + I + D +A +L +A++ G+ P +FN K I Sbjct: 1 MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 52 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L N +I + + + +I LY + GG G + + Sbjct: 53 LNFLNQRNISINYFFYGVSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 103 Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 E+ + + + SM PL + G I +++ + Sbjct: 104 DCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 162 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I ++ Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 203 >gi|294339882|emb|CAZ88245.1| LexA repressor [Thiomonas sp. 3As] Length = 243 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 15/218 (6%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPT-----SFNKSKRFG----IEGRNRWPS 54 ++I + I P + +A K G R G G +R Sbjct: 12 QQEILDLITASVRELGYPPTRAEIAAKLGFRSANAAEDHLQALARKGVIELTPGASRGIR 71 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + +T + + L P + G G+ Sbjct: 72 ITESQRASPSTTTSGKTSGAMGGRASG-LRADLSHGLQLALPGAEQLCLPLVGRVAAGHP 130 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 E + D K + SM GD+L + S+ G ++ Sbjct: 131 ILAQEHIEQTLNVDPGAFSVRPDYLLKVRGMSMRDAGILDGDMLAVKSSQTAQSGQIVVA 190 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 + ++ K L + I+L+ N + V+ S Sbjct: 191 RI-GDEVTVKRL-RLQADHIELLPANPEFAPIRVDASQ 226 >gi|166031859|ref|ZP_02234688.1| hypothetical protein DORFOR_01560 [Dorea formicigenerans ATCC 27755] gi|166028312|gb|EDR47069.1| hypothetical protein DORFOR_01560 [Dorea formicigenerans ATCC 27755] Length = 205 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 56/221 (25%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I + I P+ + L TS + + G R P+ Sbjct: 9 KQQEILDYIKSQILERGFPPAVRDICEAVHLKSTSSVHSHLETLEKNGYIKRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + + P + N N Sbjct: 69 EILDESFNFNRREMVN--------------------VPLIGRVAAGEPLLAQQNIENYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + Q SM+ GD++++ + GD ++ Sbjct: 109 IPME-------FMPNNQTFMLTVCGESMVNAGILNGDMVLVEQQQTADNGDMVVALID-D 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N V D + + +++ Sbjct: 161 GATVKTFYKEE-GFIRLQPENDFMDPIIVR--DCQILGKVI 198 >gi|229827171|ref|ZP_04453240.1| hypothetical protein GCWU000182_02556 [Abiotrophia defectiva ATCC 49176] gi|229788789|gb|EEP24903.1| hypothetical protein GCWU000182_02556 [Abiotrophia defectiva ATCC 49176] Length = 231 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 20/231 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNR---------- 51 K + + I + + LT LA+K + P S + + +R Sbjct: 2 KDLGKTIAGHRKAYKLTQCQLAKKLTEYDIYVKPNSVSSWESGISLPSSRQFLAICEILN 61 Query: 52 --WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 TE I + + + +K + + P Sbjct: 62 IYDIYTEFIGTNPDNPFRNLNKEGVDKVMEYTRLLEKSGDYRIAEIIPLHVIRERKVYYT 121 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + E ++ + D SM P+Y +++ + Q+ G+ Sbjct: 122 AVSAGNGSFLDGEDYEMYSSADIPEKADFGVHISGDSMEPVYHDRELIWIEQTEQLEDGE 181 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G+ K + R + L+SLN Y + E S + R+L Sbjct: 182 IGIFYLD-GNAYVKQFQNNRKGAY-LVSLNKAYEPMPITESSSFKIFGRVL 230 >gi|255280891|ref|ZP_05345446.1| repressor LexA [Bryantella formatexigens DSM 14469] gi|255268339|gb|EET61544.1| repressor LexA [Bryantella formatexigens DSM 14469] Length = 206 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 49/218 (22%), Gaps = 30/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I E I P+ + L TS S E++ K Sbjct: 9 KQSEILEYIKSEILNRGFPPAVREICEAVNLKSTSSVHSH------------LETLEK-- 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 D E G G V E Sbjct: 55 ----------NGYIRRDPTKPRAIEIIDDNFNLVRREVVNVPIVGRVAAGEPILAVENIE 104 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P + Q Q SM+ GD +++ N GD ++ Sbjct: 105 SYFPIPAEFMPNAQTFMLTVQGESMINAGIFDGDQILVQEQSVANNGDMVVAL-VEDSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V +++ + +++ Sbjct: 164 VKTFYK-EDGYYRLQPENDNMDPIIV-RGELQILGKVI 199 >gi|149012706|ref|ZP_01833682.1| phage transcriptional repressor [Streptococcus pneumoniae SP19-BS75] gi|147763306|gb|EDK70244.1| phage transcriptional repressor [Streptococcus pneumoniae SP19-BS75] Length = 263 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 68/261 (26%), Gaps = 59/261 (22%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I E I ++ +T LA++ G+ ++ + PS I K+ Sbjct: 8 QIIAENITHFRKQRGITQKELAKEVGITASTMTDYMKLRS-----APSFGVIQKLADYFG 62 Query: 67 --ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------------- 105 ++ S + + + Sbjct: 63 VKKSDIDTTFKEESTNSLPDAPDSLTQQIMDKVVHLTPPNQKIVLRTSEELLESQNEEET 122 Query: 106 ----------------------SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + F G ++ I D K Sbjct: 123 KINEVSEVISLYQVEVVSETAAACGFNYGFGYDDTDRETIEVDERP----PRHDIATKVS 178 Query: 144 DTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P Y+ GDIL +++ + GD +I K + + L+SLN Y Sbjct: 179 GDSMQPDYQDGDILYLVDKGLTTYNGDLAVIAY-GDRSYFKKIY-TENGRLRLVSLNDKY 236 Query: 203 PVDTVE---MSDIEW-IARIL 219 ++ D I ++ Sbjct: 237 EDIILDFPPAEDTHIKIYAVV 257 >gi|123441735|ref|YP_001005719.1| putative prophage repressor protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088696|emb|CAL11500.1| putative prophage repressor protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 240 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 71/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + + + ++ +A + G+ ++ N+ + Sbjct: 4 KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNK 114 + K+L + L + + L P + + GN Sbjct: 62 AAFAKVLNEPISSFSPSLATELAKMAESLSISSPNRLNDKPTGTVANSYPLISWISAGNW 121 Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167 + + + +I + SM + +G I++++ + Sbjct: 122 YEAIEPYQLRDIEIWPESTKNAHDSAFWLSVKGDSMTSPSGISFPEGMIILVDPEKEPMP 181 Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + K LI G L LN Y + + + + + ++ Sbjct: 182 GNFVVAKLTDDNEATFKKLIVDAGVKY-LKPLNPAYRLIELNGN-CKILGVVV 232 >gi|152990207|ref|YP_001355929.1| hypothetical protein NIS_0458 [Nitratiruptor sp. SB155-2] gi|151422068|dbj|BAF69572.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 246 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 17/223 (7%) Query: 10 WEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 +E + E+ ++ A++ D T+ ++ +R + + ++ A E Sbjct: 24 YERLKFFREKVLDIPQGEFAKRIDTDVTAVSRYERGAGAKKI---TYNIKSRLKDAFGEE 80 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + Q + + K + V P+ K +I Sbjct: 81 VAQWIATGELPQIDQKSDVKPVLQTNESCKEGYPVHILSVRPSAGKTTNFEAIDIFDSGQ 140 Query: 129 GIY--------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 ++ + + SM+P+ +I++ + GD L + + Sbjct: 141 SAIIDKIFIKKPVKGRLRAMQVDGYSMIPMLFPDSWVIVDETKE-FTGDGLYVINFDNVL 199 Query: 181 VAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + K+L ++ + S N Y ++ D E +++ Sbjct: 200 MVKLLEMNLNTGNLWVKSANPDYDSWEIKADDQRHFEIYGKVI 242 >gi|238023271|ref|ZP_04603697.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147] gi|237865391|gb|EEP66531.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147] Length = 214 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 28/223 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + + I + I + + +LT + LA+K G+ + ++ + + P+ E+++ Sbjct: 1 MQATT---IGQRIKQKRKELHLTQADLAKKVQGVSHAAISQWETDITK-----PNAENLY 52 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + LL + + + ++ +DS + + Sbjct: 53 DLSQIFKCDFVWLLRGEGENITPHKIENVTKIPVFRYDDLKN--WDSTRIINHTETEYIM 110 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 S D SM P + GD+++++ ++ G+ +L + G+ Sbjct: 111 SEINHSEF---------AVAFNIIDDSMTPDFLVGDLIVIDPKVRPLPGEFVLARS--GE 159 Query: 180 IVAKV------LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 L +S L+ LN Y + +IE I Sbjct: 160 TTLFRKFKANELDLGNEQSFSLIPLNDDYASLSSSNHEIEIIG 202 >gi|312961392|ref|ZP_07775897.1| LexA repressor [Pseudomonas fluorescens WH6] gi|311285050|gb|EFQ63626.1| LexA repressor [Pseudomonas fluorescens WH6] Length = 205 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT+ + ++ I I + PS +A G S + Sbjct: 4 MTNLTPRRTAILTFIRDRIAQQGQPPSLAEIAEAFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + A E ++ + G + L P G Sbjct: 48 ---KHVVALTEAGFIEVNPNQARGIRLLNQPARPQWLDVPVLGRVAAGRPIGADAEVH-- 102 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 R + ++T D + Q SM GD++ + + + G ++ + Sbjct: 103 ------SRLQLDPATFVKTPDYLLRVQGDSMIEDGILDGDLVGVRRSAEALNGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K G S+ L+ N Y V Sbjct: 157 D-GEVTIKRFER-NGDSVRLLPRNPAYQPIVVGPDQ 190 >gi|305666996|ref|YP_003863283.1| transcriptional regulator [Maribacter sp. HTCC2170] gi|88709231|gb|EAR01465.1| transcriptional regulator, putative [Maribacter sp. HTCC2170] Length = 278 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 65/211 (30%), Gaps = 16/211 (7%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 T + A+ G+ T+ +R + S + + ++L L Sbjct: 38 RRDLGFTQAEFAKILGISSTT-ADIERGRTK-----LSGKVVAELLKQFKINPLWLFGES 91 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-- 134 S T K ++ S + + I Sbjct: 92 DSQYLETSKTSVIPKVV-TVDSTDNENMVLVNAKAAAGYPQNIQDTSWYKQLPAFDIPLP 150 Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGDIVAKVLISR 188 T + + SMLP R G+ ++ + + +++ + ++ K + Sbjct: 151 EFRNTTYRGFQVEGDSMLPNLRPGEWVLAKAVEDIEHVSANKMYVVVLQDAVLVKKIEKT 210 Query: 189 RGRS-IDLMSLNCCYPVDTVEMSDIEWIARI 218 + I L+SLN YP ++ I+ I ++ Sbjct: 211 PNSANITLISLNETYPPYEIKPQQIQEIWQV 241 >gi|324114073|gb|EGC08046.1| peptidase S24 [Escherichia fergusonii B253] Length = 189 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 53/156 (33%) Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + K L F + GF +V + E Sbjct: 16 DMMELIEKSFNLPRGWMDMLADGKAGATDHLEFAGNVRAGFVPVIGEAVLGVDGSVDMIE 75 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 RS IY+ K + SM P + G+ +++ V+ GD + ++ + G + Sbjct: 76 FRSGWLSIYSGDKDAYGLKVKGDSMWPRIQSGEYVVIEPNTPVHPGDEVFVRTKDGHNMI 135 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K++ R S+N + T+ + +++ + + Sbjct: 136 KIMNKTRDGDYQFSSINSDHRPITLPVEEVDKMHFV 171 >gi|319786625|ref|YP_004146100.1| transcriptional repressor, LexA family [Pseudoxanthomonas suwonensis 11-1] gi|317465137|gb|ADV26869.1| transcriptional repressor, LexA family [Pseudoxanthomonas suwonensis 11-1] Length = 216 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 18/210 (8%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I E + + + +AR G + + + E+ I Sbjct: 6 TQQAILHLIAERIEAEGMPPSQAEIARAFGF---------KGVRAAQYHLEALEAAGAIE 56 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + P P G T + E Sbjct: 57 RVPGRARGIRVRQLPQALHEEQAATAANDDALRLPVLGRVAAGM---PIGADVPT-DLAE 112 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + D + Q SM GD++ ++ + G ++ + +I Sbjct: 113 SFLVLDRVLFSPSPDYLLRVQGDSMRDEGIFDGDLIGVHRTREARSGQIVVARVD-EEIT 171 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 172 VK-LLKIGRDRIRLLPRNPDYAPIEVLPDQ 200 >gi|291278891|ref|YP_003495726.1| SOS-response transcriptional repressor [Deferribacter desulfuricans SSM1] gi|290753593|dbj|BAI79970.1| SOS-response transcriptional repressor [Deferribacter desulfuricans SSM1] Length = 196 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 52/186 (27%), Gaps = 9/186 (4%) Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 + F I +NR+ +I +I + + Sbjct: 8 QMLNFLISFKNRYGYYPTIREICTHLKLSSTASAKKMLDRLEEKGVIRRGHGKARLIEIV 67 Query: 100 SG----GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKG 154 + G G G + + + K SM Sbjct: 68 NHTHKKGIPVLGKVAAGYPILSEENILTYINLEK-FLDTDKYFFLKVTGDSMIEKKIFDE 126 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIE 213 D++++ ++ GD + + G++ K R SI L N Y VE D E Sbjct: 127 DLVLVELTKELKNGDIGVFRLN-GEVTVKTYYYNRN-SIILKPENPFYENIIVEETDDFE 184 Query: 214 WIARIL 219 I +++ Sbjct: 185 IIGKVV 190 >gi|257791362|ref|YP_003181968.1| SOS-response transcriptional repressor, LexA [Eggerthella lenta DSM 2243] gi|317490503|ref|ZP_07948983.1| LexA repressor [Eggerthella sp. 1_3_56FAA] gi|325831483|ref|ZP_08164737.1| repressor LexA [Eggerthella sp. HGA1] gi|257475259|gb|ACV55579.1| SOS-response transcriptional repressor, LexA [Eggerthella lenta DSM 2243] gi|316910396|gb|EFV32025.1| LexA repressor [Eggerthella sp. 1_3_56FAA] gi|325486737|gb|EGC89185.1| repressor LexA [Eggerthella sp. HGA1] Length = 212 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 53/218 (24%), Gaps = 24/218 (11%) Query: 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + I+ T + + GL P++ + + E + K Sbjct: 9 QQAVLDCIEECIREKGYGPTVREVCQSLGLSSPSTVHVHLKALEEKG--------LIK-R 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 L T + + P S + N +T+ +P Sbjct: 60 DPLKSRSIALTYQLEDAALATNVVQPSFSNIVNVPLVGNVAAGSPILAEENITDTLSLPT 119 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + SM GD +++ N GD ++ Sbjct: 120 EIVG-------DAPSFLLSVRGESMIEAGINDGDYVVVKEQPVANNGDIVVAIID-DGAT 171 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N +D +++ Sbjct: 172 VKRFFKESD-HIRLQPENSTMDPII--TTDCAIAGKVV 206 >gi|94263341|ref|ZP_01287156.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] gi|93456296|gb|EAT06426.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] Length = 145 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + A + SM+ DIL+++ +++ G R++I Sbjct: 37 EDYLEGQLDLNQLMVAHPAATFFVRVAGDSMINAGIHHNDILVVDRSLEPTNG-RVVIAV 95 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L+ ++ + LM+ N YP + + I ++ Sbjct: 96 LNGELTVKRLV-QKNGTARLMAENPNYPPIELTEENACQIWGVV 138 >gi|66395312|ref|YP_239602.1| ORF019 [Staphylococcus phage 69] gi|66396425|ref|YP_240780.1| ORF019 [Staphylococcus phage 92] gi|151221206|ref|YP_001332028.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257433183|ref|ZP_05609541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|296277282|ref|ZP_06859789.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus MR1] gi|62635663|gb|AAX90774.1| ORF019 [Staphylococcus phage 69] gi|62636839|gb|AAX91950.1| ORF019 [Staphylococcus phage 92] gi|104641720|gb|ABF73098.1| cI-like repressor [Staphylococcus aureus phage phiNM2] gi|150374006|dbj|BAF67266.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257281276|gb|EEV11413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] Length = 239 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 32/236 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + NLT L K + + + R P + +F+I N + Sbjct: 10 IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGY-----RTPKQDDLFEIAHILNIS 64 Query: 69 ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGG---------------FFDSG 107 I L + ++ +L + Sbjct: 65 IDDLFPTRNNKKNDITSIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 124 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 TG +I +T D SM P+ ++G + Sbjct: 125 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 184 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V S+I+ + +++ Sbjct: 185 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 238 >gi|29028568|ref|NP_803258.1| cI-like repressor [Staphylococcus phage 11] gi|57651248|ref|YP_185213.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|66395526|ref|YP_239894.1| ORF018 [Staphylococcus phage 42E] gi|88195767|ref|YP_500576.1| phage repressor protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|18920492|gb|AAL82233.1| cI-like repressor [Staphylococcus phage 11] gi|57285434|gb|AAW37528.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|62636019|gb|AAX91130.1| ORF018 [Staphylococcus phage 42E] gi|87203325|gb|ABD31135.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|315193399|gb|EFU23796.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus CGS00] Length = 239 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 32/236 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + NLT L K + + + R P + +F+I N + Sbjct: 10 IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGY-----RTPKQDDLFEIAHILNIS 64 Query: 69 ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGG---------------FFDSG 107 I L + ++ +L + Sbjct: 65 IDDLFPTRNNKKNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 124 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 TG +I +T D SM P+ ++G + Sbjct: 125 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 184 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V S+I+ + +++ Sbjct: 185 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 238 >gi|255038665|ref|YP_003089286.1| putative phage repressor [Dyadobacter fermentans DSM 18053] gi|254951421|gb|ACT96121.1| putative phage repressor [Dyadobacter fermentans DSM 18053] Length = 255 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 67/228 (29%), Gaps = 19/228 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ + ++ E NLT + A + G+ T+ +R GR R P + K Sbjct: 1 MLMAIDEE-FRRFKQIREELNLTQAAFADELGISATT-ADIER----GRTRIPG--QVVK 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L L K P + + Sbjct: 53 ELLRKYHINPLWLFGDSPQKYLHADKMYVNPKVVTVDQAGKDNIVLVSAKAAAGYPNNIG 112 Query: 121 PEIRSPHNGIYAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL 171 + I + SM P + G+ + ++ ++ + Sbjct: 113 DAQWFEALPAFTIPLPEYRNATFRGFQVDGDSMTPALQSGEWIWARAVDDWDTLSD-KHM 171 Query: 172 LIKPRTGDIVAKVLISRRGRSID-LMSLNCCYPVDTVEMSDIEWIARI 218 + ++ K L + + L+SLN Y V+ ++I I ++ Sbjct: 172 YVIVTVDSVLVKKLRKEKDSAFVNLISLNPDYAPIRVDRNEIREIWQV 219 >gi|153954390|ref|YP_001395155.1| hypothetical protein CKL_1765 [Clostridium kluyveri DSM 555] gi|146347271|gb|EDK33807.1| Conserved hypothetical protein with LexA domain [Clostridium kluyveri DSM 555] Length = 815 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 35/101 (34%), Gaps = 2/101 (1%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 ++ + + K + SM GD++++ + D + + Sbjct: 709 YEDLLRLPVHWFNNNEEHFVLKVKGDSMIEANIDNGDLVVIKKQNAADNRDIVAVAIDME 768 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + G ++ L+ N Y V + ++ + ++ Sbjct: 769 NATLKRF-RKMGDTVLLIPENEEYEPIQVRSNQVKILGIVV 808 >gi|86153305|ref|ZP_01071509.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843031|gb|EAQ60242.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni HB93-13] Length = 209 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 22/222 (9%) Query: 1 MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + I + D +A +L +A++ G+ P +FN K I Sbjct: 1 MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSIKFRNSIPYP------QI 52 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L N +I + + + I LY + GG G +++ Sbjct: 53 LNFLNGRNISINYFFYGVSPKDQLECENKYRILKLYKTNASLGG---------GGINDSI 103 Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 E+ + + + SM PL + G I +++ + Sbjct: 104 DCSELIVDEKLLNFFGGKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 162 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I I+ Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYKDVFYKNGDFLLIGAIV 203 >gi|315058148|gb|ADT72477.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni S3] Length = 209 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 69/222 (31%), Gaps = 22/222 (9%) Query: 1 MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + I + D +A +L +A++ G+ P +FN K I Sbjct: 1 MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 52 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L N +I + + + +I LY + GG G + + Sbjct: 53 LNFLNERNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 103 Query: 119 GVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 E I + + SM PL + G I +++ + Sbjct: 104 DCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 162 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I ++ Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKSGDFLLIGVVI 203 >gi|321157034|emb|CBW39022.1| Putative phage repressor protein [Streptococcus phage 040922] Length = 263 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 69/261 (26%), Gaps = 59/261 (22%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I E I ++ +T LA++ G+ ++ + PS I K+ Sbjct: 8 QIIAENITHFRKQRGITQKELAKEVGITASTMTDYMKLRS-----APSFGVIQKLADYFG 62 Query: 67 ETICQLLDLP-------------------------------------------FSDGRTT 83 + + T Sbjct: 63 VKKSDIDTTFKEESTNSLPDAPDSLTQQIMDKVVQLTPPNQKIVLRTSEELLESQNEEET 122 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + E + + + F G ++ I D K Sbjct: 123 KINEVSEVISLYQVEVVSETAAACGFNYGFGYDDTDRETIEVDERP----PRHDIATKVS 178 Query: 144 DTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P Y+ GDIL +++ + GD +I K + + L+SLN Y Sbjct: 179 GDSMQPDYQDGDILYLVDKGLTTYNGDLAVIAY-GDRSYFKKIY-TENGRLRLVSLNDKY 236 Query: 203 PVDTVE---MSDIEW-IARIL 219 ++ D I ++ Sbjct: 237 EDIILDFPPAEDTHIKIYAVV 257 >gi|170724550|ref|YP_001758576.1| LexA repressor [Shewanella woodyi ATCC 51908] gi|229621749|sp|B1KM68|LEXA_SHEWM RecName: Full=LexA repressor gi|169809897|gb|ACA84481.1| LexA repressor [Shewanella woodyi ATCC 51908] Length = 205 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 35/214 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I + P + +A++ G + E Sbjct: 1 MRPLTPRQAEILELIKCNIAETGMPPTRAEIAKRLGFKSA---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + I L G G G Sbjct: 46 HLKALAKK-------------GCIEIIPGTSRGIRLAQTEELEEQGLPLIGQVAAGEPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + +GD+L ++ A Q G ++ + Sbjct: 93 AQEHVEQHYQVDPNMFHPSADFLLRVRGDSMKDIGILEGDLLAVHKAEQARNGQVVVAR- 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K + G ++ L + N Y V++ Sbjct: 152 VEDDVTVKRFEKK-GSTVYLHAENEDYSPIVVDL 184 >gi|94266498|ref|ZP_01290188.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] gi|93452885|gb|EAT03399.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] Length = 145 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + A + SM+ DIL+++ +++ G R++I Sbjct: 37 EDYLEGQLDLNQLMVAHPAATFFVRVAGDSMINAGIHHNDILVVDRSLEPTNG-RVVIAV 95 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L+ ++ + LM+ N YP + I ++ Sbjct: 96 LNGELTVKRLV-QKNGTARLMAENPNYPPIELTEESACQIWGVV 138 >gi|307710044|ref|ZP_07646489.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619229|gb|EFN98360.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 260 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 66/242 (27%), Gaps = 42/242 (17%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW---------------- 52 I E I + + T L K G+ + ++ + Sbjct: 10 IGEKIKQYRLANGWTQQELGAKIGISKNAIGNYEKGFRSPKKNTMFDLANAFNVSIDDLF 69 Query: 53 --------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 P+T I I + + R ++K ++ + + Sbjct: 70 PPIQKDTPPTTSPIQTIYDQLEPPGQRKVITYAEKLRDEQEKRRKEKINEVSEKVIDLYQ 129 Query: 105 DSGV--------FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 V F G ++ I D K SM P Y+ GDI Sbjct: 130 VEVVSETAAASGFNYGFGYDDTDRETIEVDERP----PRHDIATKVSGDSMQPDYQDGDI 185 Query: 157 L-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDI 212 L +++ + GD +I K + + L+SLN Y ++ D Sbjct: 186 LYLVDRGLTTYNGDLAVIAY-GDRSYFKKIY-TENGRLRLVSLNDKYEDIILDFPPAEDT 243 Query: 213 EW 214 Sbjct: 244 HI 245 >gi|209918882|ref|YP_002292966.1| putative phage repressor [Escherichia coli SE11] gi|209912141|dbj|BAG77215.1| putative phage repressor [Escherichia coli SE11] Length = 215 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 64/209 (30%), Gaps = 15/209 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + ++ + LT L + +G+ + ++ E P ++++ K+ A Sbjct: 3 ESLGIRLKKLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T LL S + + + YF + F T + + Sbjct: 58 TTESYLLYGVSSPELSFVQSNPGTKIPYFSWGDAISFLILEGEKTMGNVDRITTFFDVVE 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181 + ++ + S P G +IL G + + + Sbjct: 118 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLTNEPSMT 173 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K L+ G+ + L LN Y + Sbjct: 174 IKKLV-IDGKLVYLSPLNPRYQSSLLTPE 201 >gi|251778028|ref|ZP_04820948.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082343|gb|EES48233.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 248 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 69/248 (27%), Gaps = 37/248 (14%) Query: 1 MTSFSHKKIWEAIDRMA----ERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 MT S + + I ER T LA L + + ++PS Sbjct: 1 MT-LSKTDLGKKIKEARKLKSERSGKKYTGQNLADDLKLSRSYIGDIESG-----RKYPS 54 Query: 55 TESIFKILA--------------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 E + I + + L P KEI + Sbjct: 55 YELLTAIADACEVPFSFFNESNYYEKPKFNLDTSFNTLFAGPGKSHSPENIDLKEINNMD 114 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 S + W + + K + SM + +G Sbjct: 115 LNYSFITIPIVGSIRAGHPIWAEDNLQGYIPVSKNSLKTDSIYFGLKVKGDSMNLEFDEG 174 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPV--DTVEMS 210 ILI+ + G+ +I+ + K ++ I L+ + N + ++ Sbjct: 175 TILIVEKTPCIENGEIGVIRINGFEATVKKVV-LNDDMITLIPMSNNPEHIPNMYNLKTD 233 Query: 211 DIEWIARI 218 DIE I ++ Sbjct: 234 DIEIIGKV 241 >gi|219854981|ref|YP_002472103.1| hypothetical protein CKR_1638 [Clostridium kluyveri NBRC 12016] gi|219568705|dbj|BAH06689.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 829 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 35/101 (34%), Gaps = 2/101 (1%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 ++ + + K + SM GD++++ + D + + Sbjct: 723 YEDLLRLPVHWFNNNEEHFVLKVKGDSMIEANIDNGDLVVIKKQNAADNRDIVAVAIDME 782 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + G ++ L+ N Y V + ++ + ++ Sbjct: 783 NATLKRF-RKMGDTVLLIPENEEYEPIQVRSNQVKILGIVV 822 >gi|120612752|ref|YP_972430.1| putative phage repressor [Acidovorax citrulli AAC00-1] gi|120591216|gb|ABM34656.1| putative phage repressor [Acidovorax citrulli AAC00-1] Length = 248 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 61/224 (27%), Gaps = 24/224 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R NLT AR+ L + K +R P + ++ + Sbjct: 31 LGDRIRRCR--GNLTREEFARRLELHINTVGKFERGLTV-----PDAFVLLRMAEVGSCQ 83 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPH 127 + LL + S G+ + V P Sbjct: 84 VQWLLTGEE-----PTPSVPKSIRAIEVGSYVFVPHFDVQLSAGHGVFADVETVIAMRPF 138 Query: 128 NGIYAIQT------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + Q SM P R D +L+ + + G ++ Sbjct: 139 DVKFVRQELGISHDDLALVSVVGNSMEPYLRSRDTTLLDRRANDVGAEGIHAIRLDGALM 198 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILW 220 K + G+ + + S N Y V D + R+ W Sbjct: 199 LKFVQRLPGKVLRVSSANQDYAPFEVTGNEEAERDFAVLGRVRW 242 >gi|284029144|ref|YP_003379075.1| SOS-response transcriptional repressor, LexA [Kribbella flavida DSM 17836] gi|283808437|gb|ADB30276.1| SOS-response transcriptional repressor, LexA [Kribbella flavida DSM 17836] Length = 228 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 54/205 (26%), Gaps = 27/205 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI RH +PS + GL +S ++ E Sbjct: 30 QQRILVAIRDWVVRHGYSPSTRQIGEAVGLRSASSVSRHLASLEEK-------------- 75 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 L P + + + + + +P Sbjct: 76 GFLQRGASMSRQLDVRLFLQDTASRAVADDSVSVPVVGDIAAGTPISAVEHLDDQLTLPR 135 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + + SM+ GDI+++ + + G + + Sbjct: 136 GLTG-------RGTVFGLRVRGESMIDAAICDGDIVVVRQQSEAHSGQIVAAMID-DEAT 187 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT 206 K + RR + L N Y V Sbjct: 188 VK-VYRRRNGHVYLEPRNPDYEVID 211 >gi|163814064|ref|ZP_02205456.1| hypothetical protein COPEUT_00217 [Coprococcus eutactus ATCC 27759] gi|158450513|gb|EDP27508.1| hypothetical protein COPEUT_00217 [Coprococcus eutactus ATCC 27759] Length = 206 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 55/218 (25%), Gaps = 29/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I E I PS + + GL TS S + L Sbjct: 9 KQNEILEYIKEEQLSKGYPPSVREICKAVGLKSTS----------------SVHAHLASL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + ++ P + T N + VP Sbjct: 53 EENGYIRRDPTKPRAIEIIDDDFALSRREVVNIP-IVGQVAAGQPILATQNIMDYFPVPP 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + Q + + SM+ + GD+LI+ + D ++ Sbjct: 112 EYIHNTN-----NQTFMLRVKGESMINIGINDGDLLIVEQCSSASNRDIVVALI-EDGAT 165 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N VE D + +++ Sbjct: 166 VKRYFK-ENGHIRLQPENDYMDPIIVEHCD--ILGKVI 200 >gi|332875243|ref|ZP_08443075.1| peptidase S24-like protein [Acinetobacter baumannii 6014059] gi|332736500|gb|EGJ67495.1| peptidase S24-like protein [Acinetobacter baumannii 6014059] Length = 227 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 57/197 (28%), Gaps = 10/197 (5%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 + +A + S + G + ++ L + Sbjct: 26 TEMAEFCKVSKASVGQWFN----GPTKELDGSNLTLAAEFLGVNHKWLAGERAPMLLDKK 81 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + + ++ V P + A + Q Sbjct: 82 SDANVVFNNDEISKIPVLDYVQAGLFNSVGYDGV-NPIGETYTTYKSAKEKSVFSLTVQG 140 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR----GRSI-DLMSLN 199 SMLP ++ GD+L +++A+ G ++ + + K GR I +L+ LN Sbjct: 141 DSMLPDFKPGDLLTIDTALMPQPGSFVVAQNGDYEATFKKYRVIGYDDFGREIFELVPLN 200 Query: 200 CCYPVDTVEMSDIEWIA 216 YP + +I I Sbjct: 201 PDYPTLSSLNHNISIIG 217 >gi|294085815|ref|YP_003552575.1| prophage MuMc02-like, peptidase, family S24 [Candidatus Puniceispirillum marinum IMCC1322] gi|292665390|gb|ADE40491.1| prophage MuMc02-like, peptidase, family S24 [Candidatus Puniceispirillum marinum IMCC1322] Length = 253 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 14/212 (6%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 LT +R G + ++ G + IL T+ LP Sbjct: 38 LTLKQASRAIGRNDAYLHQYLNRGSPRHLPEAIRYQLAAILGVDQATLAHHDSLPKGARN 97 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----------WNTVGVPEIRSPHNGIY 131 + S F G + P Sbjct: 98 ADISHTATNSAPLGLQTMSSVPFLDIHASAGGGTLVDASADTATAALAFPRSWLRKISP- 156 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-- 189 + SM P+ GD ++L++ + I +VAK + Sbjct: 157 SKTDALKLITISGDSMAPVLEHGDTVMLDTDQTRPTPPGIFILHDGLGLVAKRIELVPST 216 Query: 190 -GRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 +++ + S N Y + +++ I R++W Sbjct: 217 SPQTLRICSENQAYTNYQRTIDEVQIIGRVVW 248 >gi|291459076|ref|ZP_06598466.1| repressor LexA [Oribacterium sp. oral taxon 078 str. F0262] gi|291418330|gb|EFE92049.1| repressor LexA [Oribacterium sp. oral taxon 078 str. F0262] Length = 228 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 68/224 (30%), Gaps = 33/224 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTE 56 MT +++ + + N PS + R GL TS F+ G R Sbjct: 25 MTEM-QAAVFQYLKAHVKEKNYAPSVRDICRAVGLKSTSSVFSYLNDLEAMGLIRK---- 79 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 T+ Q+L L ++ ++PLL +G F N + Sbjct: 80 ------DPTHPRAIQILGLNQDAREEGGRELVQVPLLGTVAAGQPI------FAEENITD 127 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +P P+ I + SM+ GD +I+ G+ ++ Sbjct: 128 YYPIPVDMLPNQRI-------FMLNVKGDSMINCGILSGDRVIVAQQNSCENGEIVVALI 180 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V + E + +++ Sbjct: 181 D-DSATVKRFYREKD-YIRLQPENDSMSPILV--ENCEILGKVI 220 >gi|293402310|ref|ZP_06646447.1| LexA repressor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304157|gb|EFE45409.1| LexA repressor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 194 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 37/213 (17%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I +L+ + G+ ++ + + + + + K+ + Sbjct: 7 IRYYRASEHLSLEAIGDYVGVAKSTVKRWESGESKNIPQA----KLEKLSELFGINV--- 59 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + P+L + +G F + + V E Sbjct: 60 ---------EACLNNQIKPILGYVKAGYDLFAQENLL----GYEEVTRKE---------- 96 Query: 133 IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + D K Q SM GD++ + S VN G+ ++ ++ K +I + Sbjct: 97 ARQGDYYLKVQGDSMNGSRIYDGDLVYVKSCSDVNSGEIAVVLVDRQEVTIKKIIKKED- 155 Query: 192 SIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219 S+ L++ N Y D I+ + ++L Sbjct: 156 SLLLVASNPTYEPRLFHGEDLRNGRIQILGKVL 188 >gi|126641192|ref|YP_001084176.1| S24 family peptidase [Acinetobacter baumannii ATCC 17978] Length = 225 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 19/228 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M +K + ++ + + + T + L G+ + + R ++ Sbjct: 1 MEDAKYKDFADRLNALMKAKDSPIKTINELKNAIGVSYEMARRYTLGSA--KPRIEKLQT 58 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + I + ++ ++K E + + G F + Sbjct: 59 LADIFGV-EISYLDHGTKLDNNIDLSDKVGFEGRRVPVISWVAAGSFTPIETVLKDTEIE 117 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIK 174 +P + K SM P + GD + +N IQ D +++ Sbjct: 118 EYLPPNKR-------CGKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVA 170 Query: 175 PRTG-DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219 + K LI + L LN +P +++ D + +++ Sbjct: 171 CAGDSEATFKRLIIEGEGTSKFLEPLNPDWPDKIIKLSEDCRLVGKVV 218 >gi|78356205|ref|YP_387654.1| transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218610|gb|ABB37959.1| transcriptional regulator, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 270 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 29/265 (10%), Positives = 56/265 (21%), Gaps = 55/265 (20%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S ++ E ++ R +A AG+ + K R+PS ++ ++ Sbjct: 9 SELRMQEYVEHAISRLG-GVREVAVAAGVSRRTVYAWKNGE-----RFPSRSNLNRLSGV 62 Query: 65 TNE------------------------------------TICQLLDLPFSDGRTTEKKEK 88 Sbjct: 63 LMRCAPSESPVPEFPAADGRESAAGLGVHENDGTEYGRRAAFGATGAAAHAAHPLHDFSD 122 Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVP-EIRSPHNGIYAIQTQDTRHKT 142 L G V + + Sbjct: 123 MPDLRGVLDEFVFVSKADARPSAGGGSLQTGAENVERHAFRLDWLLSKTHDTSSLRLMEV 182 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC- 201 SM P GD +++N D++ + +I K + N Sbjct: 183 MGRSMEPTLHNGDDVLVNEGDTYLVEDKVYVVRVQDEIYIKRFAR-TPGRLLFRGDNRDL 241 Query: 202 -YPVDTVEMSDI----EWIARILWA 221 Y ++ D+ I R++WA Sbjct: 242 AYQDIEIDPQDVSCDWTVIGRVIWA 266 >gi|270262714|ref|ZP_06190985.1| transcriptional repressor [Serratia odorifera 4Rx13] gi|270043398|gb|EFA16491.1| transcriptional repressor [Serratia odorifera 4Rx13] Length = 234 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 58/230 (25%), Gaps = 28/230 (12%) Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 R + + A + ++ E +R +I A N Sbjct: 5 ARQGVNQNEFAILVESSAPTLSQI---TGEKSSRNLGDNLARRIEAKLNLPKGWFDVFHE 61 Query: 78 --------------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 K F G+ + E Sbjct: 62 KQLVRPFDNVAAESDFQPARLKPVVWEDTEQDKEEFVEIPLLDIDFSAGDGCYEIVDREE 121 Query: 124 RSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 S Y + + +SM P + GD++ +N+ + Sbjct: 122 FSLIFRRYYLHKMGVAVNAARIIRISGSSMEPRLQDGDVVGINTDDTRIREGKTYAIRHG 181 Query: 178 GDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDIEWIARILWAS 222 + KVLI + + + SLN Y + + + + R+ W+S Sbjct: 182 NLLRVKVLIEQPDGGVTIRSLNREEYQDEHLSYAQRKDQLVVLGRVFWSS 231 >gi|296135719|ref|YP_003642961.1| transcriptional repressor, LexA family [Thiomonas intermedia K12] gi|295795841|gb|ADG30631.1| transcriptional repressor, LexA family [Thiomonas intermedia K12] Length = 243 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 60/218 (27%), Gaps = 15/218 (6%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPT-----SFNKSKRFG----IEGRNRWPS 54 ++I + I P + +A K G R G G +R Sbjct: 12 QQEILDLITASVRELGYPPTRAEIAAKLGFRSANAAEDHLQALARKGVIELTPGASRGIR 71 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + T+ + L P + G G+ Sbjct: 72 ITESQR-ASPSMTTLGKTSGAMGGRASGLRADLSHGLQLALPGAEQLCLPLVGRVAAGHP 130 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 E + D K + SM GD+L + S+ G ++ Sbjct: 131 ILAQEHIEQTLNVDPGAFSVRPDYLLKVRGMSMRDAGILDGDMLAVKSSQTAQSGQIVVA 190 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 + ++ K L + I+L+ N + V+ S Sbjct: 191 RI-GDEVTVKRL-RLQADHIELLPANPEFAPIRVDASQ 226 >gi|163748808|ref|ZP_02156060.1| LexA repressor [Shewanella benthica KT99] gi|161331582|gb|EDQ02387.1| LexA repressor [Shewanella benthica KT99] Length = 205 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 58/214 (27%), Gaps = 35/214 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A++ G + E Sbjct: 1 MRPLTPRQAEILELIKRNISDTGMPPTRAEIAKRLGFKSA---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + I L+ G G G Sbjct: 46 HLKALAKK-------------GRIEIIPGTSRGIRLIQAAEPEDLGLPLIGQVAAGEPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + +GD+L ++ Q G ++ + Sbjct: 93 AEEHIEQHYKVDPSMFSPCADFLLRVHGDSMKDIGILEGDLLAVHKISQAKNGQIVVAR- 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K + G + L + N Y V++ Sbjct: 152 VEDDVTVKRFEKK-GSMVYLHAENENYAPIVVDL 184 >gi|52081939|ref|YP_080730.1| phage-like protein [Bacillus licheniformis ATCC 14580] gi|52005150|gb|AAU25092.1| hypothetical phagelike protein [Bacillus licheniformis ATCC 14580] Length = 212 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 20/217 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ N++ LA+K + + + + I+ E + K L T Sbjct: 3 VGERIRSRRKQLNMSVDQLAQKLKKNRATVYRYESNEIDNMPLTV-LEPLAKALNVTPAY 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +TE + Y+P S G N + +P+ Sbjct: 62 LMG--------WESTEPVQLSTKYPYYPIGISAGLPLCIDSIDENNVEYILIPDNL---M 110 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGDIVAKVLI 186 G +A + + SM + ++ + + GD ++ GD K Sbjct: 111 GKWAGRKDIFMMRINGDSMNRIMPHDSLIAVRPVPLSNLRDGDIVVY-SDGGDYAVKRFY 169 Query: 187 SRRGRSIDLMSLNCC--YPVDTVEMS--DIEWIARIL 219 R + I + + D+ +++ Sbjct: 170 RREDKVI-FRPDSSDLNFTDYVTSADNIDLRIHGKVV 205 >gi|325453295|gb|ADZ13598.1| phage repressor protein [Cronobacter phage ENT39118] Length = 232 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 66/229 (28%), Gaps = 24/229 (10%) Query: 2 TSFSHKKIWEAIDRMA-------ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 S +++ +A +R+ + L+ LA + G+ ++ + + S Sbjct: 4 KPLSDEQVLDA-ERLRRIYNEKKKDLGLSQEVLAERLGISQSAVAQFLAGKNALNMKRAS 62 Query: 55 --TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 E + + A + ++ S G + Sbjct: 63 EFAEVLQVPIDAFSPSLADEAKQIAKSNVVYAGNYVPGRKYPVISSVQAGSWCE------ 116 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCG 168 + ++ IQ + SM +G ++ ++ + G Sbjct: 117 -AVEAYTLKDVDQWLESDAHIQGDGFWLLVEGDSMTSPAGLSIPEGTYVLFDTGREPING 175 Query: 169 DRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + ++ + + K L+ G L LN +P+ + + I Sbjct: 176 NLVVAKLTDSNEATFKKLVIDSGHRY-LKGLNPAWPMIPINGN-CRIIG 222 >gi|254785997|ref|YP_003073426.1| LexA repressor [Teredinibacter turnerae T7901] gi|259494479|sp|C5BIH2|LEXA_TERTT RecName: Full=LexA repressor gi|237685540|gb|ACR12804.1| LexA repressor [Teredinibacter turnerae T7901] Length = 200 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 62/217 (28%), Gaps = 39/217 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++I + I P + +A G + ++ R + E Sbjct: 1 MIKLTARQQQILDLIRDHIAETGYPPTRAEIAEILGFKSA---NAAEEHLKALARKGAIE 57 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I + + + P S + + + Sbjct: 58 MIA----------------------GASRGIRLPEVQSGIPLVGRVAAGSPILAQEHIED 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 +P + D SM + GD+L ++ QV GD ++ + Sbjct: 96 YCDIPHN-------FFSPKADFLLTVHGMSMKDIGILDGDLLAVHKTDQVRNGDIVVARI 148 Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSD 211 ++ K R R ++L N + V V++ D Sbjct: 149 D-NEVTVKRFKRERNRAQVELWPENPDFNVIEVDLRD 184 >gi|127511061|ref|YP_001092258.1| LexA repressor [Shewanella loihica PV-4] gi|166224647|sp|A3Q951|LEXA_SHELP RecName: Full=LexA repressor gi|126636356|gb|ABO21999.1| SOS-response transcriptional repressor, LexA [Shewanella loihica PV-4] Length = 205 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 35/214 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I + I R + P + +AR+ G + E Sbjct: 1 MRPLTPRQAEILDLIKRNIADTGMPPTRAEIARRLGFKSA---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + I L G G G Sbjct: 46 HLKALAKK-------------GCIEIMPGTSRGIKLTQEEEPEDLGLPLIGQVAAGEPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + +GD+L ++ Q G ++ + Sbjct: 93 AQEHVEQHYQVDPSMFRPSADFLLRVRGDSMKDIGILEGDLLAVHKVEQARNGQIVVAR- 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K R G ++ L + N Y V++ Sbjct: 152 VEDDVTVKRFEKR-GSTVYLHAENEEYSPIVVDL 184 >gi|319763314|ref|YP_004127251.1| lexa repressor [Alicycliphilus denitrificans BC] gi|330825509|ref|YP_004388812.1| SOS-response transcriptional repressor, LexA [Alicycliphilus denitrificans K601] gi|317117875|gb|ADV00364.1| LexA repressor [Alicycliphilus denitrificans BC] gi|329310881|gb|AEB85296.1| SOS-response transcriptional repressor, LexA [Alicycliphilus denitrificans K601] Length = 224 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 63/214 (29%), Gaps = 16/214 (7%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + ++I + I R P+ A L S N ++ +++ Sbjct: 5 PKLTARQQQILDLIQTAIARTGAPPTRAEIAAELGFKSANAAEEH----------LQALA 54 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPL-LYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + + + L P G G+ Sbjct: 55 RKGVIELVSGTSRGIRLCGETVRNINAVRGTQFSLPIPGLSQLTLPLIGRVAAGSPILAQ 114 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + G D K + SM GD+L + + + G ++ + Sbjct: 115 EHVDQTYTVEGSLFAHKPDYLLKVRGMSMRDAGIMDGDLLAVQATREARSGQIIVAR-LG 173 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K L R G +I+L+ N YPV VE + Sbjct: 174 DDVTVKRL-RRTGSAIELLPENPDYPVIRVEPGE 206 >gi|225016686|ref|ZP_03705878.1| hypothetical protein CLOSTMETH_00595 [Clostridium methylpentosum DSM 5476] gi|224950545|gb|EEG31754.1| hypothetical protein CLOSTMETH_00595 [Clostridium methylpentosum DSM 5476] Length = 192 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 51/221 (23%), Gaps = 39/221 (17%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT+ ++I+ I + + + P+ + G+ TS Sbjct: 1 MTNQKLEQIYNYIKQRCQE-GIPPTIREICGALGIKSTS--------------------- 38 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + EK L P + G G + Sbjct: 39 ----------TAHKYVGQLVEMGAIEKDPNLTRTLKIPHMNTALVPVIGKITAGQPITAI 88 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 E P ++ Q Q SM GD++I+ GD + Sbjct: 89 EQIEGYIPFTPPHSADKQLFALNVQGDSMIEAGIFDGDVVIVEQTPVARDGDIVAALID- 147 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L N + + ++ Sbjct: 148 DSATIKRFYK-ENGGYRLQPENSTMDPIY--TDTLSILGKV 185 >gi|148547213|ref|YP_001267315.1| putative phage repressor [Pseudomonas putida F1] gi|148511271|gb|ABQ78131.1| putative phage repressor [Pseudomonas putida F1] Length = 289 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 54/211 (25%), Gaps = 21/211 (9%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 L+P A+ A + + + + + E Q L + Sbjct: 83 LSPGEHAQAA---------VEPGDNKLSAADLVKQMLARSGKGIAEETRQRLLAAAQEPA 133 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI----------RSPHNGIY 131 E E G PE+ + Sbjct: 134 DATLLEAEPLRPGLVGDEVWIAHYDVRAAMGGGQIPHDYPEMFKDVRVSPSHLRELGVTF 193 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + SM P R D LI++ +I+ GD + I K L Sbjct: 194 SEHHHLKMVTGWGQSMEPTIRHRDPLIVDVSIREFVGDGIYFFSWGDHIYIKRLQIADED 253 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220 +++S N + + + AR+ +W Sbjct: 254 HFEMISDNSRHKDRMIRREETYIQARVLLVW 284 >gi|298206777|ref|YP_003714956.1| transcriptional regulator [Croceibacter atlanticus HTCC2559] gi|83849409|gb|EAP87277.1| transcriptional regulator [Croceibacter atlanticus HTCC2559] Length = 240 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 69/216 (31%), Gaps = 22/216 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + +A K + ++++ + ++ K+ + Sbjct: 4 IGQRIKSLRKEKKYSQQFIAEKLNISQSAYSLIESAHNNVMI--GHVLTLSKLYDVS--- 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L E + +G + + ++++ +P Sbjct: 59 --TDFILKGETNLIHMNIENGFIPFINVEAVAGNLNELQGAHSQSEYDRYRIPG------ 110 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGDIVAKVLI 186 + + + + SM P + DILI + ++ + L++ ++ K + Sbjct: 111 --FKSSSNHLLFEVEGDSMTPTFYPNDILICEAQHSISDVADNSLVVIGTEKGLLTKRVK 168 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWI----ARI 218 G L S N Y +E +I+ I ++ Sbjct: 169 KEYGYCY-LESDNKHYSPIKIENEEIKAILSIKGKV 203 >gi|253577871|ref|ZP_04855143.1| transcriptional repressor [Ruminococcus sp. 5_1_39B_FAA] gi|251850189|gb|EES78147.1| transcriptional repressor [Ruminococcus sp. 5_1_39BFAA] Length = 206 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 51/218 (23%), Gaps = 30/218 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I + I P+ + L TS S S + L Sbjct: 9 KQQEILDYIKNEILNRGFPPAVREICEAVNLKSTS----------------SVHSHLEAL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ P G G V E Sbjct: 53 EKNGYIRRDATKPRAIEIIDDNFNLVRREVVNVP--------IIGTVAAGQPLLAVENIE 104 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P + +Q K + SM+ GD +++ GD ++ Sbjct: 105 GYFPIPAEFMPNSQSFLLKVKGESMINAGIFDGDQVLVKQQSTAEDGDIVVALID-DGAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N V ++ + ++ Sbjct: 164 VKTFHKEK-GYYRLQPENDTMEPILVHEG-LQILGKVF 199 >gi|66395390|ref|YP_239683.1| ORF020 [Staphylococcus phage 53] gi|62635740|gb|AAX90851.1| ORF020 [Staphylococcus phage 53] Length = 239 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 32/236 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + NLT L K + + + R P + +F+I N + Sbjct: 10 IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGY-----RTPKQDDLFEIAHILNIS 64 Query: 69 ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGG---------------FFDSG 107 I L + ++ +L + Sbjct: 65 IDDLFPTRNNKKNDITSIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKESKLVSYIT 124 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 TG +I +T D SM P+ ++G + Sbjct: 125 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 184 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V S+I+ + +++ Sbjct: 185 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 238 >gi|229135297|ref|ZP_04264092.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] gi|228648166|gb|EEL04206.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] Length = 242 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 68/229 (29%), Gaps = 18/229 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + + I + +T L + G + + + E + +I Sbjct: 15 MKQNISKYVGQQIKHYRKLKKMTQKELGLRIGKKHNTISSYENGTNE--PEQDALFAIAN 72 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L + + P++ + T E YFP S S G + N+ + + Sbjct: 73 ALDVSINDLFPSTMEPYTITKETTSIVAESQYNYFPTSISAGLPHCIDSISDNELEKISI 132 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--QVNCGDRLLIKPRTG 178 P G ++ + SM + I+++ + GD ++ G Sbjct: 133 PNSL---MGKWSGNKDVFVTRVNGDSMNRIIPHCSIIVVKKVELSDLKNGDIVV-FSNGG 188 Query: 179 DIVAKVLIS-RRGRSIDLMSLNCCYPVDTVE-------MSDIEWIARIL 219 D K + + Y + +++ +++ Sbjct: 189 DYSVKRFFHDKENDRVIFRPD--SYDNRFFDYTVSYENAKNLKIHGKVV 235 >gi|317505686|ref|ZP_07963583.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315663200|gb|EFV02970.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 226 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 8/219 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRNRWPSTESIFKILAATNE 67 I E I + +T + R G+ SF KS K G G ++ + S++ L++ Sbjct: 2 ILERIKEYIDCKGITVAAFERSIGMSNASFGKSLKNRGAIGSDKIENILSVYTDLSSEWL 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIR 124 + L + + E + G G + + V + + Sbjct: 62 LTGKGDMLKSDNEKLIEAHKTFGGSAKSSNKQKGIPLIPIDAVAGFPSDDNDGVYMEDCE 121 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--NCGDRLLIKPRTGDIVA 182 + + + + SM PLY GDI+ + + + + + Sbjct: 122 HYSIPEFEAKGANFLIRVSGDSMHPLYENGDIIACRKISDILFFQWGGIYVLDTSQGALV 181 Query: 183 KVLISRRGRS--IDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I +S N + + SDI ++ I+ Sbjct: 182 KRVEEAEDDKESILCISENPRFKPFRLPKSDIRSLSTIV 220 >gi|167856784|ref|ZP_02479439.1| putative transcriptional regulator [Haemophilus parasuis 29755] gi|167852091|gb|EDS23450.1| putative transcriptional regulator [Haemophilus parasuis 29755] Length = 230 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 58/203 (28%), Gaps = 10/203 (4%) Query: 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA--TNETICQLLDLPFS 78 + ARK +P+ + + + + IL Sbjct: 21 GGNIADFARKIDKEPSYVARMLYPEGKPGAKPIGEKMAHHILHKFVLPLDWFNRDYDDEG 80 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 + E+ I +L S G V + + + Sbjct: 81 ELIPFEEPSIVIDVLNVEASAGNGSTGDLV----EIVSKLHYVPEQFYLYFRGIDPENIR 136 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 + SM P + GD++ ++ +I GD + + ++ K L G + ++S Sbjct: 137 VINIKGDSMAPTFSSGDMIFIDISIPYFDGDGVYVFTYKNNLYVKRLQ-MAGDHLIVISD 195 Query: 199 NCCYPVDTVEMSDIE---WIARI 218 N Y + IE ++ Sbjct: 196 NETYKEWEINEESIEQLYIHGKV 218 >gi|303229090|ref|ZP_07315894.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302516243|gb|EFL58181.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 216 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 23/222 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ + I + NL+ +A++ G T+ K + E P ++++ + Sbjct: 2 KLSDNIRYFRKLRNLSQDEIAKRLGYKSFTTIQKWETGMAE-----PPVGKLYELADILH 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +I LL + S T + N + I Sbjct: 57 VSIMDLLKDNLDAEEALTVSTNFYHYVPASVSAG-------ALTTIDAINFMPTISIPDF 109 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDIVAK 183 G YA SM + + G ++ + + I+ ++ GD ++ GD K Sbjct: 110 MMGRYAGNKNILLMAVNGESMNNVIQNGSVIAILTNIELLDIHDGDIVV-IKNGGDYTVK 168 Query: 184 VLISRRG-RSIDLMSLNCC--YPVDTVE---MSDIEWIARIL 219 + + + + + D+ I +++ Sbjct: 169 RFYNDKQHQEFVFKPDSSDMAFRDIIFSYENTDDLYLIGKVV 210 >gi|317048368|ref|YP_004116016.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316949985|gb|ADU69460.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 241 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 61/222 (27%), Gaps = 20/222 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +IW+A E+ L A G + ++ +TE+I K A Sbjct: 20 QIWDAKK---EQLGLNQEKAADFFGFSTQAAISQFLNAKAP-----INTENILKFSALLE 71 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L + S + + T + + Sbjct: 72 VAPEELKPSIGPLLAHIRGTAAPQDNQRNEAKYEYPLYTSVQAGSFTETGTYTQQDAKDW 131 Query: 127 HNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLI-KPRTGD 179 + + SM P + +G +++++ +V GD + + Sbjct: 132 VATTKKASEKAFWLEVSGHSMTAPPGGRPSFPEGILILVDPEQEVKPGDFCVAGIYNNSE 191 Query: 180 IVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARIL 219 + K + + L L N Y + I +++ Sbjct: 192 VTFKRFVW-EDGTPWLEPLNTNPRYQSIPCN-ENCRIIGKVV 231 >gi|331091111|ref|ZP_08339953.1| LexA repressor [Lachnospiraceae bacterium 2_1_46FAA] gi|330405333|gb|EGG84869.1| LexA repressor [Lachnospiraceae bacterium 2_1_46FAA] Length = 205 Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 31/218 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I E I + P+ + L TS S S + L Sbjct: 9 KQSEILEYIKSEILKRGYPPAVREICEAVNLKSTS----------------SVHSHLETL 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + L+ P + N + +P Sbjct: 53 EKNGYIRRDPTKPRAIEIIDDMFNLTRRDLVQVP-MIGRVAAGEPLLAQENIEDYFPIPA 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P+N +Y + Q SM+ GD +++ V+ G ++ Sbjct: 112 ELMPNNQVY-------MLQVQGESMINAGILDGDYVLVEQCNTVSNGQMVVAL-VEDGAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V+ ++ + +++ Sbjct: 164 VKTFYKEE-GIYRLQPENDTMSPIIVQ--EVTILGKVI 198 >gi|322376771|ref|ZP_08051264.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321282578|gb|EFX59585.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 249 Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 80/217 (36%), Gaps = 21/217 (9%) Query: 5 SHKKIWEAIDRMAERHNLTPSGL-ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ +I + I+ +A N+ S L K S + + R P + KI+ Sbjct: 46 TYPRIGK-IELLANYFNINKSDLIENKISTAQPSDSLLEEITNTARKLSPENK---KIVL 101 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T+E + + + + + + Y+ + S G +G + + + +P Sbjct: 102 RTSEELLESQNEEETKENEVSEVIQLYSYDYYDHAASAG---TGQYLNDVRVERIELPVD 158 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D + SM P Y GD++ + +++ +N G + GD K Sbjct: 159 IDA----------DFVIPIKGDSMEPDYHDGDLVFIQTSVDLNNGVIGV-FNYNGDAYIK 207 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 L+ + ++ L SLN Y + D I ++ Sbjct: 208 QLVIDKDQAY-LHSLNPAYKDMPITPDTDFRIIGEVV 243 >gi|304310925|ref|YP_003810523.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [gamma proteobacterium HdN1] gi|301796658|emb|CBL44870.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [gamma proteobacterium HdN1] Length = 203 Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 57/223 (25%), Gaps = 36/223 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + +I I P+ + + T +S E + Sbjct: 1 MEKLTARQSEILNYIRTHIGETGYPPT----RMDIAQTFGFRSPNAAE---------EHL 47 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + + G G G V Sbjct: 48 RALARK--------------GAIRMTPSASRGIQLVDDEAQAAGVPIIGEVAAGFPVLAV 93 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 D + + SM GD+L ++ ++ + G ++ + Sbjct: 94 ENIRGYCAVPAELFTPRADFFLRVKGLSMKDAGILDGDLLAVHKTLEASNGQIVVARI-G 152 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIA 216 ++ K L R +I L+ N + + D IE IA Sbjct: 153 DEVTVKRLQKR-NNAIVLLPENPDFAEIKIPPHDESFAIEGIA 194 >gi|326800506|ref|YP_004318325.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326551270|gb|ADZ79655.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 256 Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 64/222 (28%), Gaps = 18/222 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + T A + + + E P E + K + Sbjct: 3 NIASNLKYLRRKKGHTQQQFADLMEIKRSLVGAYEEDRAE-----PKYELLKKFASYYEL 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP-----PSGSGGFFDSGVFPTG--NKWNTVGV 120 T+ +L++ D K + G N + Sbjct: 58 TMDELVNEKIDDKWKPTPKGDSSSVRVLSITVNEDDRENIELVPVKASAGYLNGYADPDY 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRT 177 + Q + + SMLP + G ++I + V +I ++ Sbjct: 118 ISELPKFRLPFFKQGTYRAFELKGDSMLP-LQPGTVVICEYVEDWFDVKPNQTYVIISKS 176 Query: 178 GDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 IV K + + + + L+S N Y VE DI I + Sbjct: 177 DGIVYKRIAHKFKEEKGLKLLSDNKVYEPYWVETPDILEIWK 218 >gi|319955273|ref|YP_004166540.1| phage repressor [Cellulophaga algicola DSM 14237] gi|319423933|gb|ADV51042.1| putative phage repressor [Cellulophaga algicola DSM 14237] Length = 251 Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 68/222 (30%), Gaps = 16/222 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ I + + T + A G+ T+ +R + S + + ++L Sbjct: 3 NEIILKRFIEIRRDLGFTQAEFAALIGVSNTT-ADIERGRTK-----LSGKVVTELLKQF 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L + S T ++ S + Sbjct: 57 KINPLWLFNESDSKYIETSHTSVIPKVV-TVDSADRENMVLVNAKAAAGYPQNIADTSWY 115 Query: 126 PHNGIYAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPR 176 + + + + SMLP R G+ ++ + V ++ + Sbjct: 116 QQLPAFDLPIPEFRNATYRGFQVEGDSMLPNLRPGEWVLAKAIEHIDDVTPNKIYVVVLQ 175 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 +V KV+ ++ L+SLN YP ++ I+ I ++ Sbjct: 176 DAVLVKKVIKKPNSNNVTLVSLNESYPPYEIKPFQIQEIWQV 217 >gi|188585438|ref|YP_001916983.1| LexA repressor [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350125|gb|ACB84395.1| LexA repressor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 815 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 9/115 (7%) Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164 + + V +P+ P+ + SM+ KGD +I+ Sbjct: 704 ELKYAHQDIQGDVELPKEIVPN------PDNCFMLEVTGDSMINAGIDKGDYVIVQKQNY 757 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K G +I LM N Y V D+ +++ Sbjct: 758 AENLDIVVAVIDQ-EATLKKYSRM-GDTILLMPENKNYEPIIVSEEDLIINGKVI 810 >gi|317484230|ref|ZP_07943159.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924579|gb|EFV45736.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 215 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 12/203 (5%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 T LA G+ ++ ++SK+ G W + L Sbjct: 21 TQQELADVLGIKQSTISESKKRGTVP-PGWFLV-----LFEMRGVNPDWLKQGKGPIYLR 74 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 T + + + G + + + V P YA + + Sbjct: 75 T-EDGRYMEPEPAATPLGRGVSLP-YYDSDRVQDGVWEPSGTIMLPEPYA-GKELRILRI 131 Query: 143 QDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 S P R+G + ++++ + + G + +V K + ++ L + N Sbjct: 132 TGDSFSPTVRQGAFVGVDTSCVRPSSGSIFAVSVPFEGVVIKRVFCDSD-TLLLRTDNPL 190 Query: 202 YPVDTVEMSDI-EWIARILWASQ 223 +P ++ +++ I R+ W Q Sbjct: 191 HPSMSIPLAEAGRLIGRVAWVFQ 213 >gi|291287285|ref|YP_003504101.1| transcriptional repressor, LexA family [Denitrovibrio acetiphilus DSM 12809] gi|290884445|gb|ADD68145.1| transcriptional repressor, LexA family [Denitrovibrio acetiphilus DSM 12809] Length = 201 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 58/220 (26%), Gaps = 41/220 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT KK + I+ + +PS +A+ GL TS S+ Sbjct: 1 MTDR-QKKFMQFIEDFIRDNGYSPSIREIAKGLGLSSTS-------------------SV 40 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K+L + + + G G G Sbjct: 41 KKMLDRL---------------TEKGLLNRSGSIARSIEMPNRGIPVVGRIVAGVPVEAE 85 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRT 177 E + + K SM GD +++ + G + Sbjct: 86 ENIEGYMKLDRLTIRSGGHFFLKVDGDSMKDEAILHGDYVLIKPGPIITNGQIGAFRIN- 144 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIA 216 G++ K + I LM N + V E D E I Sbjct: 145 GEVTLKTF-RQNAEGIYLMPANEAFEPIPVGEYDDFEVIG 183 >gi|255606333|ref|XP_002538548.1| conserved hypothetical protein [Ricinus communis] gi|223511638|gb|EEF23835.1| conserved hypothetical protein [Ricinus communis] Length = 331 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 11/220 (5%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T+ + + + NLT LA AG+ + P+ + Sbjct: 113 TTLTAPQ---RVRAALGPLNLTAETLASVAGIGSDIASLWLAGQGP----DPTLIQAVAL 165 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 +L + G ++ P+ + + + G W + Sbjct: 166 QNTYGVNSVWILKGKGAPGIAIRYDDEWRPVTFKNWHLVPVRGMAQLGDNGY-WAEMEYS 224 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E ++ K + SM P + G+ ++L + GD +LIK + G ++ Sbjct: 225 EGYVATA---SLDKDAYALKCKGDSMKPRIKDGEYVVLEPNQPIAPGDEVLIKAKDGRVM 281 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 K + I L+S N + +VE ++IE + + W Sbjct: 282 VKEFVYEAQGKIYLLSTNEAHGKISVERANIEHMHYVGWI 321 >gi|330808694|ref|YP_004353156.1| transcription factor, LexA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376802|gb|AEA68152.1| Putative transcription factor, LexA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 205 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT+ + ++ I I PS ++ G S + Sbjct: 4 MTTLTPRRTAILTFIRERIADQGQPPSLAEISEAFGFASRSVAR--------------KH 49 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + A E + + ++P+L +G P G Sbjct: 50 VLALTEAGFIEVNPHQARGIRLLNQPPRPELLDVPVLGRVAAG---------LPIGADAE 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 R + + D + Q SM GD++ + Q G ++ + Sbjct: 101 VH----SRLMLDPAIFTKAPDYLLRVQGDSMIEDGILDGDLVGVQRTPQAANGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K G + L+ N Y VE Sbjct: 157 D-GEVTIKRFERI-GERVRLLPRNPAYQPIIVEADQ 190 >gi|190573722|ref|YP_001971567.1| LexA repressor [Stenotrophomonas maltophilia K279a] gi|190011644|emb|CAQ45263.1| putative LexA repressor [Stenotrophomonas maltophilia K279a] Length = 223 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 23/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I + I E + + +AR G + + + E I Sbjct: 18 TQQAILQLIAERIESEGAPPSQTEIARAFGF---------KGVRAAQYHLEALEQAGAIR 68 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + +K E L + P G + Sbjct: 69 RIPGQAR-----GIRLMQAPPVEKLAEPDLPDSVLRLPVLGRVAAGLPIGADIGSDDF-- 121 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ D K Q SM+ GD++ ++ + G ++ + +I Sbjct: 122 --VVLDRVFFSPAPDYLLKVQGDSMIDEGIFDGDLIGVHRTRDAHSGQIVVARID-DEIT 178 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 179 VK-LLKIAKDRIRLLPRNPDYKPIEVLPDQ 207 >gi|167033137|ref|YP_001668368.1| putative phage repressor [Pseudomonas putida GB-1] gi|166859625|gb|ABY98032.1| putative phage repressor [Pseudomonas putida GB-1] Length = 289 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 12/177 (6%) Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + + E Q L + T + E G Sbjct: 108 QMLARSGKGIPEETRQRLLAAAQEPADTPLVKAERVRPGLVGDEVWIAHYDVRAAMGGGQ 167 Query: 116 NTVGVPEI----------RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 PE+ ++ SM P + D LI++ +I+ Sbjct: 168 IPHDYPEMFKDIRVSPSHLRELGVAFSEHHHLKMVTGWGQSMEPTIKHRDPLIVDVSIRE 227 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220 GD + I K L +++S N + + + AR+ +W Sbjct: 228 FVGDGIYFFSWGDHIYIKRLQIADEEHFEMISDNSRHKDRMIRQEETYIQARVLLVW 284 >gi|229496464|ref|ZP_04390180.1| putative phage repressor [Porphyromonas endodontalis ATCC 35406] gi|229316692|gb|EEN82609.1| putative phage repressor [Porphyromonas endodontalis ATCC 35406] Length = 226 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 27/225 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I + +D ++ S K G+ P+ F G+ ++ + KIL Sbjct: 9 ERILQFLD----EKGISKSLFFNKVGISPS------NFKGVGKKSSIGSDLVVKILTEYP 58 Query: 67 ETICQLLDLPFSDG------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 E + L L + + +KEI + P G + + Sbjct: 59 ELSPEWLMLGEGEMLRDPSKQAANDPKKEIIPSHTPQEGIPLIPIEAWAGALSGEDY--- 115 Query: 121 PEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIK 174 I Y + + D + SM P Y GDI+ + ++ I Sbjct: 116 -SIMEYECERYVVPSFQDADFLITVRGDSMTPKYYSGDIVACRKVFLSDLWFQWGKVYII 174 Query: 175 PRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + +I L+S N Y + I IA + Sbjct: 175 DTNQGSLLKKVRRGSSEETITLVSENPEYEPFELRKDQIYNIAIV 219 >gi|15150328|gb|AAK85394.1|AF399932_1 LexA [Xanthomonas oryzae] Length = 213 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + +AR G + E++ + Sbjct: 6 TQQAILALIAERIDADAVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G T P+ + P G + Sbjct: 54 AIRRVPGQARGIRLAGQGGQTRAAAVSEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARLD-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|238796818|ref|ZP_04640323.1| Prophage repressor protein [Yersinia mollaretii ATCC 43969] gi|238719306|gb|EEQ11117.1| Prophage repressor protein [Yersinia mollaretii ATCC 43969] Length = 240 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 24/233 (10%), Positives = 72/233 (30%), Gaps = 19/233 (8%) Query: 2 TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + + + ++ +A + G+ ++ N+ + Sbjct: 4 KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNK 114 + K+L + L + + L P S + + G+ Sbjct: 62 AAFAKVLNEPISSFSPSLAKELAKMAESLSISTRSGLKDKPTGSVANSYPLISWISAGSW 121 Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167 + + + +I + SM + +G I++++ + Sbjct: 122 YEAIEPYTLRDIEIWPESTKNAHDSAFWLSVKGDSMTSPSGISFPEGMIILVDPEKEPMP 181 Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + K LI G L LN Y + + + + + ++ Sbjct: 182 GNFVIAKLTDDNEATFKKLIVDAGVKY-LKPLNPAYRLIELTGN-CKIVGVVV 232 >gi|329917931|ref|ZP_08276514.1| SOS-response repressor and protease LexA [Oxalobacteraceae bacterium IMCC9480] gi|327544461|gb|EGF30015.1| SOS-response repressor and protease LexA [Oxalobacteraceae bacterium IMCC9480] Length = 220 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 61/216 (28%), Gaps = 18/216 (8%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++I I P + +AR+ G S N ++ Sbjct: 1 MIKLTARQEQILNLIRDAIINTGFPPTRAEIARELGFR--SVNAAEEHLQA--------- 49 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + + + L S +++ +L P G G+ Sbjct: 50 LARKGAIEISPGTSRGIRLIKSAVELANERDSRQLVLPHPALMQLSLPLIGRVAAGSPIL 109 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + E + D K + SM GD++ + + G ++ + Sbjct: 110 ALEHVEATYQVDPSLFSAKPDYLLKVRGMSMRDAGIIDGDLIAVKKSDSARNGQIVVAR- 168 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K I+L+ N + ++ Sbjct: 169 LGDDVTVKRYHK-TDDLIELLPENADFKPIRIDPER 203 >gi|222823809|ref|YP_002575383.1| peptidase S24 [Campylobacter lari RM2100] gi|222539031|gb|ACM64132.1| conserved hypothetical protein, putative peptidase S24 [Campylobacter lari RM2100] Length = 211 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 59/223 (26%), Gaps = 22/223 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTP---SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M +I + + + ++ + S +A+ ++P +F K P + Sbjct: 1 MQM---NEITDKLKFILQKEGIKNAKDSDVAKMLNINPDTFYSMKFRNSI-----PYKQI 52 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + + Y + GG G + Sbjct: 53 LHFLNERNININAFFYEDSLESNTPALDLNYNVLKYYDVNASMGG---------GALNDN 103 Query: 118 VGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 V E+ + SM P + + +++ G + Sbjct: 104 VSFSEVIVDEKLSDFFGSKDCDIIPCIGDSMEPEIKDESLCLIDKNKSFKEG-GVFAVNT 162 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + L S N Y + D + +++ Sbjct: 163 RDGLFIKQIFKSNKGGVYLHSFNLSYADVHYQNGDFLIVGKVV 205 >gi|291166135|gb|EFE28181.1| repressor LexA [Filifactor alocis ATCC 35896] Length = 207 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 56/221 (25%), Gaps = 38/221 (17%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES 57 K + I PS + + G TS N+ K +G R S ++ Sbjct: 8 KEKSTLQYIANTVNEKGYPPSVREICKSVGFKSTSTAYACLNQLK---DKGYIRKDSVKT 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 E+ P + + N + Sbjct: 65 RA-----------------LEVIDPIERMGFAKKNTVDIPIIGKVTAGTPILAVENVDDY 107 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + + E + + + SM+ DI+++ + GD ++ Sbjct: 108 IPISEHWINS-------KEHFLLRVEGDSMINAGIYNNDIVLIEQCQTASNGDIVVALID 160 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 K + I L N Y +I+ + + Sbjct: 161 GEYTTIKRFFYEKN-RICLKPENEKYSPIF--SDNIKILGK 198 >gi|73541696|ref|YP_296216.1| LexA repressor [Ralstonia eutropha JMP134] gi|123732906|sp|Q46ZR1|LEXA_RALEJ RecName: Full=LexA repressor gi|72119109|gb|AAZ61372.1| SOS-response transcriptional repressor, LexA [Ralstonia eutropha JMP134] Length = 218 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 66/216 (30%), Gaps = 21/216 (9%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I P + +A + G E R + + Sbjct: 1 MATLTPRQQQIFDLIRNTIRNTGFPPTRAEIAAEFGFSSP-------NAAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ + I + S+ L G G+ Sbjct: 54 GVIELTPGASRGIRLKVARSDSEMPDQFS-------LPVSGIMQLTLPLVGRVAAGSPIL 106 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + D + + SM GD+L + A + G ++ + Sbjct: 107 AAEHIDRQYQVDASVFDERPDYLLRVRGLSMRDAGILDGDLLAVRKASEAPNGKIVVAR- 165 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K L R +I+L++ N +P V Sbjct: 166 LGDDVTVKRLQRR-DGAIELIAENPDFPNIMVTPGR 200 >gi|78047328|ref|YP_363503.1| LexA repressor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035758|emb|CAJ23449.1| LexA repressor [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 213 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 53/210 (25%), Gaps = 21/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I I + + + + ++R G + E++ Sbjct: 6 TQQAILALIAERIDADGVPPSQTEISRAFGFKGVRAAQYH------------LEALEHAG 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A G T + P G + Sbjct: 54 AIRRVPGQARGIRLAGQGAQTRTAPVSEAARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ + D K Q SM GD++ ++ G ++ + +I Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197 >gi|218768655|ref|YP_002343167.1| putative regulator [Neisseria meningitidis Z2491] gi|304386903|ref|ZP_07369164.1| transcriptional regulator [Neisseria meningitidis ATCC 13091] gi|121052663|emb|CAM09003.1| putative regulator [Neisseria meningitidis Z2491] gi|304339008|gb|EFM05101.1| transcriptional regulator [Neisseria meningitidis ATCC 13091] gi|319410887|emb|CBY91280.1| putative transcriptional regulator [Neisseria meningitidis WUE 2594] Length = 234 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 64/220 (29%), Gaps = 29/220 (13%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 P+ K + + F++ + G P+ + + KI T + LL S Sbjct: 17 PADFYNKIDMSASGFSRVWKDGAI-----PTADYLIKIQEVTGCDLNWLLTGQGSPYMNK 71 Query: 84 EKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + G+ + + Y Sbjct: 72 GQAVEVRTHTDGTATDTLGNPINLDEFVFIPRYDVYAAAGHGYPAEDDKPLFCMAFRRYW 131 Query: 133 IQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 I+ + + + SM + GD +++N A D L + + K + Sbjct: 132 IENYVTRQLDKLSVIAVKGDSMEGVLNHGDNILVNHAETT-PRDGLYVIRIDNHLFVKQI 190 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILWA 221 + + S N Y ++++D + I R+ W Sbjct: 191 QKLP-GKLLVKSANPVYEPFEIDLTDDNQNVAIIGRVEWY 229 >gi|77459882|ref|YP_349389.1| putative prophage repressor [Pseudomonas fluorescens Pf0-1] gi|77383885|gb|ABA75398.1| phage repressor protein. Serine peptidase. MEROPS family S24 [Pseudomonas fluorescens Pf0-1] Length = 232 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 66/228 (28%), Gaps = 19/228 (8%) Query: 3 SFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 H W E + N+T L + G+ + R P + ++ Sbjct: 11 MVPHMDKWIELVKAKMSELNVTQVELGERVGMSQGGIGHWLN-----KRREPGITQMNRV 65 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L A ++ + E+PL P + + Sbjct: 66 LKALGMEYLEV---AVVIREPQIDADDEMPLAQKYNPYFRYPVSEWNAPIEARESQPAYS 122 Query: 122 EIRSPHNGI---YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIK 174 + Y + +M +G +++++ A++ G ++ + Sbjct: 123 SAKDKRRFELTDYHARGPAFWLTVMGNAMTAPTGQSIGEGMMILVDPALEAEPGKLVIAQ 182 Query: 175 P-RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + + + + LI G+ L LN + + + I ++ A Sbjct: 183 WPDSDEAIFRKLIEEGGQRY-LAPLNPTW-PKALLTDECRIIGVVVQA 228 >gi|320533325|ref|ZP_08034020.1| repressor LexA [Actinomyces sp. oral taxon 171 str. F0337] gi|320134461|gb|EFW26714.1| repressor LexA [Actinomyces sp. oral taxon 171 str. F0337] Length = 293 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 23/224 (10%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--RWPSTESIF 59 ++EA+ H PS + + GL S +K +R G+ R+ R + E + Sbjct: 74 VYEAVRGSIATHGYPPSLREIGEQVGLTSPSSVKHQLDKLERLGLVRRDPHRPRAMEVVA 133 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + T S + E P + + + + + Sbjct: 134 TDSSPRGRTGSSGGTAHVSSVDSPSIPGVEDGDAVAVPLVGRIAAGTPILAEQDITDVMA 193 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + + + SM GD +++ S G+ + Sbjct: 194 LPRRLTG-------EGELFMLEVHGDSMIEAAICDGDWVVVRSQPDAANGEVVAAMIEDV 246 Query: 179 D---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D KVL R L+ N YP + + +++ Sbjct: 247 DGASATVKVLSRR-DGHQWLLPRNSSYPPI--DGDHATIMGKVV 287 >gi|163867684|ref|YP_001608885.1| hypothetical protein Btr_0435 [Bartonella tribocorum CIP 105476] gi|161017332|emb|CAK00890.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 200 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 73/217 (33%), Gaps = 36/217 (16%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + + L+ LA + + + ++ G E R ++I ++ + Sbjct: 3 KNIIATLQVLQSEFGLSQKDLADRLNVTQATVSRWL--GSESDPRGSHRDAILELYKSLK 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +PL+ + +G + P + T+ +P Sbjct: 61 GYNQ---------------ITTLVPLMGYVGAGLEIDTNVEQIP-EDGLETIEIP----- 99 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNC---GDRLLIKPRTGDIVA 182 + + + + SM P+Y+ GD++++ + GD +++ Sbjct: 100 ----FDLPFEAIGFMVRGDSMYPVYKDGDLIVVKHLQTKPVSGYYGDEVVVLTEDNRRFI 155 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L S N ++ + I+W+ I+ Sbjct: 156 KQITRSLEG-IVLKSWNAD----PIKNAKIKWVGEIV 187 >gi|153009649|ref|YP_001370864.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] gi|151561537|gb|ABS15035.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] Length = 243 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 19/223 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI A+ ++ L +A+ AG+ + +R S E++ + + Sbjct: 21 KIGTALRTARKQRGLVMRDIAQAAGVSTGAVGNWERGANV-----MSMENLQAVASYLEI 75 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-----E 122 L + + + ++ G D + + Sbjct: 76 DPIAL-SKGNVKFLSETQPVSDAEIISDAGHIDTGPLDVEILGVAVGGDDGDFTLNGEVS 134 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT----- 177 + A + SM+P Y G++L GD ++I+ Sbjct: 135 GYARRPAGIAHLRKVFALHVLSDSMVPRYEPGELLYCG-GRDAVSGDDVVIEMFPEQGES 193 Query: 178 -GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G K L+ R + N + I+ + R++ Sbjct: 194 VGKAYIKRLVKRSKTELICKQYNPA-KELVFDPYAIKNMWRVI 235 >gi|237745859|ref|ZP_04576339.1| transcriptional repressor LexA [Oxalobacter formigenes HOxBLS] gi|229377210|gb|EEO27301.1| transcriptional repressor LexA [Oxalobacter formigenes HOxBLS] Length = 212 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 24/224 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + ++I I + E+ P+ A L S N ++ Sbjct: 1 MIKLTARQQEILNLISQSIEKTGFPPTRAEIAAELGFRSVNAAEEH-------------- 46 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L A + S G + E +IP+ G G G+ Sbjct: 47 ---LQALARKGVIEIVPGISRGIRLVQDEGKIPVSETGRQGQYAVPLVGRVAAGSPILAQ 103 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + D K + SM + +GD++ + + G ++ + Sbjct: 104 EHVEKTYQLDPALFSDKPDYLLKVRGLSMRDIGILEGDLIAVKKTEKARNGQIVVAR-LG 162 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL 219 D+ K + G +I+L+S N + V E D ++ Sbjct: 163 DDVTVKRF-KKTGSAIELLSENPDFRPIRVNRESDDFRIEGLVV 205 >gi|193076849|gb|ABO11574.2| merops peptidase family S24 [Acinetobacter baumannii ATCC 17978] Length = 263 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 19/228 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M +K + ++ + + + T + L G+ + + R ++ Sbjct: 39 MEDAKYKDFADRLNALMKAKDSPIKTINELKNAIGVSYEMARRYTLGSA--KPRIEKLQT 96 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + I + ++ ++K E + + G F + Sbjct: 97 LADIFGV-EISYLDHGTKLDNNIDLSDKVGFEGRRVPVISWVAAGSFTPIETVLKDTEIE 155 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIK 174 +P + K SM P + GD + +N IQ D +++ Sbjct: 156 EYLPPNKR-------CGKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVA 208 Query: 175 PRTG-DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219 + K LI + L LN +P +++ D + +++ Sbjct: 209 CAGDSEATFKRLIIEGEGTSKFLEPLNPDWPDKIIKLSEDCRLVGKVV 256 >gi|840714|emb|CAA54479.1| lexA [Aeromonas hydrophila] Length = 207 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 33/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ E I + P + +A+K G S N ++ + Sbjct: 1 MKPLTPRQAEVLELIKANMNETGMPPTRAEIAQKLGFK--SANAAEEH----------LK 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + + + L P G G G Sbjct: 49 ALAK--------------KGVIEIMPGTSRGIRLLLEEEEPLEESGLPLIGKVAAGESIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + Q SM + GD+L ++ +V G ++ + Sbjct: 95 AQEHIESHYQVDPALFHPRADFLLRVQGMSMKNIGILDGDLLAVHKTQEVRNGQVVVARL 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L+ N V++S Sbjct: 155 D-EDVTVKRFQRK-GSQVWLLPENEELSPIEVDLS 187 >gi|315634519|ref|ZP_07889804.1| cro/CI family transcriptional regulator [Aggregatibacter segnis ATCC 33393] gi|315476746|gb|EFU67493.1| cro/CI family transcriptional regulator [Aggregatibacter segnis ATCC 33393] Length = 230 Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 8/135 (5%) Query: 96 PPSGSGGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 + F+ GN +N + ++ SM Sbjct: 93 SDEYAVPFYQDIRLAAGNGFADDIADYNNFKLRFSKATLRKQGVQYENAVCVIADGNSME 152 Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV 207 P+ G + ++ +V ++ G + K+L + I + S N Y + Sbjct: 153 PVIPDGTTVGIDMGNKVIRDGKIYAINHGGLLRIKLLYNMPNNQIKIRSYNTDEYDDEIA 212 Query: 208 EMSDIEWIARILWAS 222 + D+ I ++ W S Sbjct: 213 SLDDVSVIGKVFWYS 227 >gi|332531658|ref|ZP_08407554.1| LexA repressor [Hylemonella gracilis ATCC 19624] gi|332038884|gb|EGI75314.1| LexA repressor [Hylemonella gracilis ATCC 19624] Length = 230 Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 15/209 (7%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I + I P + +A + G E + + + + ++++ Sbjct: 16 QQQILDLIQSAIANTGAPPTRAEIATELGFKSA-------NAAEEHLQALARKGVIELVS 68 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T+ I + ++ E G G+ + Sbjct: 69 GTSRGIRLKGKALRATLSSSLSSIGEKVATGVAQL---ALPLVGRVAAGSPILAQEHVDQ 125 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + D K + SM GD+L + +A + G ++ + ++ Sbjct: 126 TYYVESSLFQRKPDYLLKVRGMSMRDAGIMDGDLLAVQTAKEAKNGQIVVAR-LGEEVTV 184 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K + ++L+ N Y VE D Sbjct: 185 KRYRRNKD-VVELLPENPDYQPIVVEPGD 212 >gi|237807486|ref|YP_002891926.1| putative phage repressor [Tolumonas auensis DSM 9187] gi|237499747|gb|ACQ92340.1| putative phage repressor [Tolumonas auensis DSM 9187] Length = 256 Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 22/225 (9%) Query: 15 RMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 R+ E L+ K G+ + K P+ + +I A N + L Sbjct: 31 RLEELKGDLSYKDFGGKVGISESGVRKYF----PPYFSMPAIDKFIQIANAHNVNLDWLA 86 Query: 74 DLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 R + + + G+ + G+ V Sbjct: 87 TGVGPKYRGDDYPIAVTSAKHSCVCKDEFDEEYALIPGYHINVSTGPGSALENETVKRHL 146 Query: 125 SPHNGIYAIQTQDTR----HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + D + SM P GD +++++ + + D+ Sbjct: 147 AFRRKWLKFRGLDIARLAVVFAKGDSMEPTIHSGDSILIDTGHNQIEDGSIFVLRLGDDL 206 Query: 181 VAKVLISRRGRSIDLMSLNC-CYPVDTVEMS---DIEWIARILWA 221 AK L SI ++S N Y V ++ I +++W Sbjct: 207 YAKRLQKNYDGSITIISDNKADYQPQVVPADHLYNLAVIGKVVWV 251 >gi|160892661|ref|ZP_02073451.1| hypothetical protein CLOL250_00191 [Clostridium sp. L2-50] gi|156865702|gb|EDO59133.1| hypothetical protein CLOL250_00191 [Clostridium sp. L2-50] Length = 207 Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 59/220 (26%), Gaps = 33/220 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 +I E I PS + + L TS + +G R T+S Sbjct: 9 KQTQILEYIRHEILAKGYPPSIREICQAVDLKSTSSVHAQLSSLEAKGYIRRDLTKS--- 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++E+ + + S G N + V Sbjct: 66 -------------RSIEIIDDDFSLTKRELVNIPIVGTVSCGQPI---LAEQNIEDYFPV 109 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + Q + + SM+ + + D++I+ G+ ++ Sbjct: 110 PPEYIHNTN-----NQTFMLRVKGDSMINVGIYEKDLVIVEQCSSARNGEIVVALI-EDS 163 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N VE E + R++ Sbjct: 164 ATVKTFYK-ENGYIRLQPENDYMDPILVEH--CEILGRVI 200 >gi|281491791|ref|YP_003353771.1| transcriptional repressor [Lactococcus lactis subsp. lactis KF147] gi|281375505|gb|ADA65015.1| Transcriptional repressor [Lactococcus lactis subsp. lactis KF147] Length = 252 Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 67/241 (27%), Gaps = 36/241 (14%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ + LT S LA K G+ ++ ++ ++ P+ E + K+ + I Sbjct: 4 GQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQ-----KSTNPTLELLEKLADIYDLPI 58 Query: 70 CQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTG--------------NK 114 +L+ ++ + + + F T Sbjct: 59 QELIKETDNNAEKQLIDNYRSLTGEQQESVINFTDFLIEQNKTEIINLKTYRRSSLDYAI 118 Query: 115 WNTVGVPEIRSPHN----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 + + D + + SM P + I + Sbjct: 119 VEDEELSAGFGQSQSNTGGNYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLNTGF 178 Query: 165 VNCGDRL-LIKPRTGD--IVAKVLISRRGRSIDLMSLNCC--YPVDTVEMSD-IEWIARI 218 GD + + G+ + K + + SLN Y + D I + Sbjct: 179 GRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPV 238 Query: 219 L 219 + Sbjct: 239 V 239 >gi|303245342|ref|ZP_07331626.1| putative phage repressor [Desulfovibrio fructosovorans JJ] gi|302493191|gb|EFL53053.1| putative phage repressor [Desulfovibrio fructosovorans JJ] Length = 226 Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 68/229 (29%), Gaps = 11/229 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I + T + +A G+ +S + +K+ + W T Sbjct: 1 MKPDTFEDAYARIQAATKTR--TQTEIANLLGIKQSSISDAKKKNTIP-DGWLITLYRAC 57 Query: 61 ILAATNETICQLL--DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L Q + +E Y + + + + Sbjct: 58 GLEPDWILYGQEPASRRAGFNLADGVAGVRETANEYAAAPMRATVYAMARTNSESGS-WI 116 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRT 177 P + K + M P+ R G + ++ ++ G+ + Sbjct: 117 RESLESIPLIESLSRP-HLLVVKMDNAGMEPVIRHGAYVGIDCDDVRLRTGEIYALDFPG 175 Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD--IEWIARILWASQ 223 +V K ++ + + L+ N +P + + I I + +W Q Sbjct: 176 EGLVIKRVVRDLEAKRLSLLPDNPSHPAQHLPLETPGITPIGKAVWVIQ 224 >gi|160893916|ref|ZP_02074695.1| hypothetical protein CLOL250_01471 [Clostridium sp. L2-50] gi|156864294|gb|EDO57725.1| hypothetical protein CLOL250_01471 [Clostridium sp. L2-50] Length = 147 Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 38/136 (27%), Gaps = 3/136 (2%) Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + E + P G P + + K Sbjct: 4 SGKYEKHVCQIIPFRRAITVYENAVSAGTGNFLEDGPSRTLNIDEALLPENTSFGVKISG 63 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P + GDI + V G+ + GD K L I L+SLN Y Sbjct: 64 DSMEPEFHDGDIAWVVKQETVENGEIGI-FSLNGDAYIKKL-REDKEGIFLVSLNKKYAP 121 Query: 205 DTV-EMSDIEWIARIL 219 V E + +++ Sbjct: 122 IRVSENDRFDVFGKVV 137 >gi|332701651|ref|ZP_08421739.1| CI repressor [Desulfovibrio africanus str. Walvis Bay] gi|332551800|gb|EGJ48844.1| CI repressor [Desulfovibrio africanus str. Walvis Bay] Length = 226 Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 11/228 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IF 59 S ++ + I + T LA G+ +S + +KR + + + Sbjct: 1 MTSFDEVLDRIKKATGAR--TQVELANLLGIRQSSISDAKRRNSVPADWYMKLYRSLGLN 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L + + S T Sbjct: 59 PEWLSDGIEPMYLKPGMGEAHVASMAEPAVGYGKSPARSRVVNVSSMTGASTKEGSWQPD 118 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTG 178 + Y + K + + M PL R+G + L+ ++ G+ + Sbjct: 119 FISQLAIPETFY--RPTLLALKIEGSGMEPLIRRGAYVGLDMDQRRILSGELYGVHVPHE 176 Query: 179 DIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223 +V K + L S N +P + D + + RI+W Q Sbjct: 177 GLVLKRVFFDAENNRFILRSENPIHPEQYLSPELKDKQLVGRIVWVLQ 224 >gi|312898672|ref|ZP_07758062.1| repressor LexA [Megasphaera micronuciformis F0359] gi|310620591|gb|EFQ04161.1| repressor LexA [Megasphaera micronuciformis F0359] Length = 205 Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 52/213 (24%), Gaps = 38/213 (17%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWPS 54 TS + ++I + I + PS + + GL T + + + R PS Sbjct: 6 TSLTTRQRQILDYIRKCVHTLGYPPSVREICSEVGLSSTSTVHGYLTDLEKLGFIRRDPS 65 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 ++L +++ G G Sbjct: 66 KNRKIELLDEGTWRSKKIVP----------------------------LPLVGTVRAGAP 97 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 E P + + SM +GD+LI+ G ++ Sbjct: 98 ITAEECVEDVYPFAAEFIGDDDCFMLTVRGDSMKDAGILEGDLLIVRQQSMARNGQIVVA 157 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 + K I L N Y Sbjct: 158 LVD-DEATVKRYYFESD-HIRLQPENDDYEPII 188 >gi|83592056|ref|YP_425808.1| phage repressor [Rhodospirillum rubrum ATCC 11170] gi|83574970|gb|ABC21521.1| phage repressor [Rhodospirillum rubrum ATCC 11170] Length = 239 Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT H + + E + A+KAG+ ++ R P+ +++ Sbjct: 16 MTGIHHDGFSARVRSVLE--GQSARSFAQKAGIKSSTLQSILRGAR------PTVDNLVA 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK------ 114 I +A+ +I L + ++ P P TG+ Sbjct: 68 IASASGVSIDWLATGGA---PPPKLSAQDAPDGAAHPDVFWIPRYDTQLATGDGAFADRA 124 Query: 115 --WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 +T+ + + SM GD+ +++ G Sbjct: 125 VRTDTIALTAKVLGQGLEGLDLGNCLFFTVEGDSMAATLNDGDVALIHRETHWRDG---- 180 Query: 173 IKPRTGDIVAKVLISR--RGRSIDLMSLN-CCYPVDTVEMSDI----EWIARILWA 221 D L + +++ N YP + + E + R+ WA Sbjct: 181 -LWAFSDGALCRLRRLQFSAEGVRVINDNREAYPPEFIPAHQWSLSHELVGRVRWA 235 >gi|121998520|ref|YP_001003307.1| SOS-response transcriptional repressor, LexA [Halorhodospira halophila SL1] gi|166224633|sp|A1WXU3|LEXA_HALHL RecName: Full=LexA repressor gi|121589925|gb|ABM62505.1| SOS-response transcriptional repressor, LexA [Halorhodospira halophila SL1] Length = 226 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 26/216 (12%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + ++I E I R P + + + G R P+ Sbjct: 1 MDTLTDRQREILELIRRSVAERGYPPTRAEICQSLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ES + LA + P + G G G+ Sbjct: 44 ESHLRALARKGAIEMRRGASRGIRLTDAFAGAAPEPSP-ATDDPNAGLPVVGRVAAGSPL 102 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + D + + SM GD+L + + G ++++ Sbjct: 103 LAEESIERYCQVDASLFSPPADYLLRVRGESMRDAGILDGDLLAVRRDTEARDGQIVVVR 162 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K L + L+ + YPV V Sbjct: 163 -LHDEVTVKFLER-CNGVLRLIPAHPDYPVIEVAAD 196 >gi|224825376|ref|ZP_03698481.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002] gi|224602297|gb|EEG08475.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002] Length = 192 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 5/181 (2%) Query: 42 KRFGIEGRNRWPSTESIF-KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 KR G ++ + +++ ++ + L + E E L S Sbjct: 6 KRQGAGRKSAFGGDKTVAMRVPEPLKPVLEAWLQEYRAIRAVRELHVDEFRSLTSELSDV 65 Query: 101 GGFFDSGVFPTGNKWNTVGV-PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 + P G + + + + SM+ GD+L+ Sbjct: 66 SLPLFASRVPAGAPVAADDLKEADVDLNTHLVRRPASSFLVTVKGDSMINAGIHDGDMLV 125 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ +++ G ++ G++ K L + + L+ N + V +I + Sbjct: 126 VDKSLEARHGKVVVAVIN-GELTVKRL-EKTATGLRLLPENPDFAPIEVPEEASFFIWGV 183 Query: 219 L 219 + Sbjct: 184 V 184 >gi|117617886|ref|YP_854716.1| LexA repressor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|134039204|sp|Q44069|LEXA_AERHH RecName: Full=LexA repressor gi|117559293|gb|ABK36241.1| LexA repressor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 207 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 33/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ E I + P + +A+K G S N ++ + Sbjct: 1 MKPLTPRQAEVLELIKANMNETGMPPTRAEIAQKLGFK--SANAAEEH----------LK 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + + + L P G G G Sbjct: 49 ALAK--------------KGVIEIMPGTSRGIRLLLEEEEPLEESGLPLIGKVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + Q SM + GD+L ++ +V G ++ + Sbjct: 95 AQEHIESHYQVDPALFHPRADFLLRVQGMSMKNIGILDGDLLAVHKTQEVRNGQVVVARL 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L+ N V++S Sbjct: 155 D-EDVTVKRFQRK-GSQVWLLPENEELSPIEVDLS 187 >gi|229824888|ref|ZP_04450957.1| hypothetical protein GCWU000182_00237 [Abiotrophia defectiva ATCC 49176] gi|229790891|gb|EEP27005.1| hypothetical protein GCWU000182_00237 [Abiotrophia defectiva ATCC 49176] Length = 204 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 57/221 (25%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I + + PS + L TS + + G R P+ Sbjct: 9 KQQEILDYLKTQVLSKGYPPSVREICEAVRLKSTSSVHSHLETLEKNGYIKRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ + L P +F N Sbjct: 69 EIVDD--------------------EFNITRRELISVPVIGTVAAGEPIFAVENISEYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P Y + + SM+ + GD +I+ + GD ++ Sbjct: 109 IPAE-------YMPADETFMLVVKGDSMINVGVYSGDKIIVKKCSTASNGDMVVAMVD-D 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N V+ ++ I +++ Sbjct: 161 SATVKTFYKEK-GYFRLQPENDSMEPIIVDH--VDIIGKVI 198 >gi|86151756|ref|ZP_01069970.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|315124259|ref|YP_004066263.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841385|gb|EAQ58633.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|315017981|gb|ADT66074.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 209 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 22/222 (9%) Query: 1 MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + I + D +A +L +A++ G+ P +FN K I Sbjct: 1 MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 52 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L N +I + + + I LY + GG G +++ Sbjct: 53 LNFLNGRNISINYFFYGVSPKDQLECENKYRILKLYKTNASLGG---------GGINDSI 103 Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 E+ + + + SM PL + G I +++ + Sbjct: 104 DCSELIVDEKLLNFFGGKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 162 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I I+ Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYKDVFYKNGDFLLIGAIV 203 >gi|255004553|ref|ZP_05279354.1| hypothetical protein AmarV_04545 [Anaplasma marginale str. Virginia] Length = 198 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 66/208 (31%), Gaps = 18/208 (8%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 +R + LA +A + + G++ P+++ + I + L+ Sbjct: 1 MDRIGINARELADRASVGKSFVYDIL----SGKSSNPTSKKLMAIAEVLQVPLAYLVGSD 56 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 T + L + +P +++++ Sbjct: 57 DGLYDVTSGGVLPVYYLAESEDEEDKNNHTRCS-------RFYMPAHT---KLPFSVESL 106 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR---SI 193 + SM P D+++++ + ++ + + I+ + L R + Sbjct: 107 RFY-DVKGDSMSPTLVGQDVVLVDVSDKIAHPAGVFAIRDSMGILIRRLEYVRDSQNIML 165 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARILWA 221 ++ N Y + DI+ + R++W Sbjct: 166 HVVCDNKKYSSYECPVEDIKVLGRVVWY 193 >gi|212219013|ref|YP_002305800.1| repressor protein C2 [Coxiella burnetii CbuK_Q154] gi|212013275|gb|ACJ20655.1| repressor protein C2 [Coxiella burnetii CbuK_Q154] Length = 238 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S + + ++ S LAR+ G+ ++ G+N P +I Sbjct: 23 MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 73 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118 I I QL+ + + P S P + V Sbjct: 74 IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 133 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + Q +M PL+ G +I+ + D ++++ + Sbjct: 134 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 187 Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 + + +I+ L SLN V + Sbjct: 188 PEARLRQIITEGNDRY-LKSLNPELEKLEVAL 218 >gi|254498302|ref|ZP_05111042.1| phage repressor [Legionella drancourtii LLAP12] gi|254352464|gb|EET11259.1| phage repressor [Legionella drancourtii LLAP12] Length = 198 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 11/193 (5%) Query: 31 AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90 L + N + R P E I ++ A L+ L KK + Sbjct: 6 TDLKQSRINNWENG-----LRTPGPEEIKQLANALEVPAAFLMCLSDEKQENQTKKLSRL 60 Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 L+ + + + + ++ K D SM+P Sbjct: 61 IPLFNHHQACDAKHCLNELREQGSSDNAVLISVSAALLPT--LEGDAFALKMIDDSMMPE 118 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISR--RGRSIDLMSLNCCYPVDTV 207 +R D L+++S+ Q G+ ++++ +++ +L++LN +P V Sbjct: 119 FRLNDTLVIDSSAQPKPGNYVVVRMDGKSEVIICQYKKLSYTSPEFELLTLNDNWPNIKV 178 Query: 208 EMS-DIEWIARIL 219 ++ I ++ Sbjct: 179 GDDIKLDIIGVVV 191 >gi|258539031|ref|YP_003173530.1| phage-related Cro/CI family transcription regulator [Lactobacillus rhamnosus Lc 705] gi|257150707|emb|CAR89679.1| Phage-related Cro/CI family transcription regulator [Lactobacillus rhamnosus Lc 705] Length = 221 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 26/225 (11%) Query: 7 KKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+I+ + R+ + + L+ + ++ + + P + S+ I Sbjct: 5 KEIFAKNLKRLMDSRGENLTELSNHIDVAYSTVSDWLHAN-----KMPRSGSLQTIADHY 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 I L + K + + + + +I Sbjct: 60 GVNISDLTTNHSQKSVSGMGTYKY--------VPANISAGTLCNVDPFTSDEIESVQISD 111 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVA 182 G YA SM G ++ + + GD ++ Sbjct: 112 KVLGKYAGDKDLLMMHINGESMNQTIPDGSLIAVKQYNDIQDLKDGDIVVFADDGDYA-V 170 Query: 183 KVLISRRGRSID-LMSLNCC--YPVD-----TVEMSDIEWIARIL 219 K + R + I + + + +E +I+ I R++ Sbjct: 171 KYFYNDRQKQIVTFIPDSTDKRFSPIMYTYEDLEEENIKIIGRVV 215 >gi|302340525|ref|YP_003805731.1| transcriptional repressor, LexA family [Spirochaeta smaragdinae DSM 11293] gi|301637710|gb|ADK83137.1| transcriptional repressor, LexA family [Spirochaeta smaragdinae DSM 11293] Length = 204 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 57/217 (26%), Gaps = 30/217 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + + E H P+ +A + + Sbjct: 1 MKELTERQQEVLDFLGCFIEEHQYPPTMREIAAHFDISVRAAYDH--------------- 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K L N L + E + P L P + N Sbjct: 46 --IKALEKKNAIRTDLNRSRAIEVLNREASPEVQPELIDVPLLGNVAAGQPLIAEENCEQ 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + +P + + + SML GD I+ Q GD ++ + Sbjct: 104 VLKIPASALR-------PGRYFALRVKGDSMLNAGILDGDTAIIQQTEQARNGDIVVARV 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 + K I L + N YP + + I Sbjct: 157 NDEAVTLKRFYRETN-RIRLKAENPVYPPIFTQHARI 192 >gi|163855268|ref|YP_001629566.1| putative transcriptional regulator [Bordetella petrii DSM 12804] gi|163258996|emb|CAP41295.1| putative transcriptional regulator [Bordetella petrii] Length = 242 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 58/212 (27%), Gaps = 14/212 (6%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI----CQLLDLPFSDG 80 + LA G P ++ + ++ +S+ + + Sbjct: 28 AKLAAILGKAPNYVSRMLYESTKEGSKRIGDDSVALLNEKFPGWMAEDGWGSAGSNVLQF 87 Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----TGNKWNTVGVPEIRSPHNGIYAIQTQ 136 + G G + E + Y+ + Sbjct: 88 APDARAATSHHDDLTIHQFGTGGSMGQGLHLPDQPGVIQSWRVSAEWVEKNVRAYSAKQN 147 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS---I 193 SM P++ GD L+++ I+V D + + K L S I Sbjct: 148 LCIVTGFGDSMQPMFNPGDPLLVDVGIRVVDFDAVYFFRVGNEGFVKRLQRIPMESGLII 207 Query: 194 DLMSLNCCYPVDTV-EMSDIEWIARI--LWAS 222 S N Y + + D E + R+ +W S Sbjct: 208 RAKSENKEYDSWDITSVMDFEVLGRVLKVWCS 239 >gi|164686056|ref|ZP_01946368.2| peptidase S24-like domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|165924149|ref|ZP_02219981.1| peptidase S24-like domain protein [Coxiella burnetii RSA 334] gi|164601612|gb|EAX33041.2| peptidase S24-like domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916408|gb|EDR35012.1| peptidase S24-like domain protein [Coxiella burnetii RSA 334] Length = 216 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S + + ++ S LAR+ G+ ++ G+N P +I Sbjct: 1 MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118 I I QL+ + + P S P + V Sbjct: 52 IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 111 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + Q +M PL+ G +I+ + D ++++ + Sbjct: 112 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 165 Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 + + +I+ L SLN V + Sbjct: 166 PEARLRQIITEGNDRY-LKSLNPELEKLEVAL 196 >gi|326797423|ref|YP_004315243.1| phage repressor [Marinomonas mediterranea MMB-1] gi|326548187|gb|ADZ93407.1| putative phage repressor [Marinomonas mediterranea MMB-1] Length = 206 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 61/200 (30%), Gaps = 6/200 (3%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATNETICQLLDLPFSDGRTTE 84 +A G+ P+ + + E + + + Sbjct: 1 MADFLGVKPSKVQDIETGKQRINEDFLILVSEKCSIDVGYLITGQHRSETMVSEPNAAQA 60 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 +KE L+Y P +G +P + +P + + Sbjct: 61 PSKKEEDLVYIPQFDIELSAGTGAYPADHPLAIASLPFSSNWLLKKGLQAHNLKLLRVMG 120 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM PL + D+++++++ GD++ K + + S+ L+S N Y Sbjct: 121 DSMEPLLKDKDMVMIDTSRVKPTEAMPFAVRLDGDLLVKGIQRQGDGSLILVSRNKAYND 180 Query: 205 DTV----EMSDIEWIARILW 220 + D I ++W Sbjct: 181 LIINSKQPPEDFAIIGAVVW 200 >gi|313892448|ref|ZP_07826038.1| peptidase S24-like protein [Dialister microaerophilus UPII 345-E] gi|313119130|gb|EFR42332.1| peptidase S24-like protein [Dialister microaerophilus UPII 345-E] Length = 218 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 73/227 (32%), Gaps = 24/227 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +K+I + I + + + LT +A K GL + + + G+ + ++ K Sbjct: 1 MYNNINKEIGQRIRKTRKANKLTLLEVAHKMGLSEGNVQRYE----IGKIENFALSTLTK 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 N T +LL + T + N + Sbjct: 57 FAKVLNTTPEELLGWVDKEDVTNSFDYSYVDEPVSAGLPENI----------NAIKNLPK 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRT 177 I G YA + + SM + G ++ + + I+ + GD ++ Sbjct: 107 IPIADVFMGKYARKQDILIMRVNGESMNKVISNGALIAVKTNIELSNITNGDIVV-FTYN 165 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC--YPVDTVEMSD---IEWIARIL 219 G+ K + I L + + + D + I +++ Sbjct: 166 GEYAVKKYY-DMDKFIMLRPSSNDLRFTDLIINKEDTNELRIIGKVV 211 >gi|291532475|emb|CBL05588.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Megamonas hypermegale ART12/1] Length = 179 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 53/202 (26%), Gaps = 33/202 (16%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 + + LAR ++ +S ++ + P ++I KI N + Sbjct: 1 MKQNELARLTKINKSSISEYLSGNYQ-----PKYKNILKIAEVLNVSPN----------- 44 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141 + + P + N + + D + Sbjct: 45 IFLEDTSSEENIKRLPILGKIAAGIPILAQENIEGYLPYDDN-----------DADFCLR 93 Query: 142 TQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200 SM+ GDI+ + V G+ + K + ++ L S N Sbjct: 94 IHGDSMINARINDGDIVFIKQQSTVENGEIAAVLVN-DSATLKRVYFV-DDTVQLRSENP 151 Query: 201 CYPVDTVEM---SDIEWIARIL 219 Y + + + + Sbjct: 152 KYKPMIFSKNNCDNFRILGKAI 173 >gi|261855492|ref|YP_003262775.1| peptidase S24/S26A/S26B, conserved region [Halothiobacillus neapolitanus c2] gi|261835961|gb|ACX95728.1| Peptidase S24/S26A/S26B, conserved region [Halothiobacillus neapolitanus c2] Length = 243 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 6/146 (4%) Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 + + + G+ + FP+ + V E + + + Sbjct: 95 WSDLLTASGLIPLQPATVAPVLTLPLFGYRIAAGFPSPA-DDYVE--ERIDLNRHLIRHK 151 Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + Q SM+ GD+LI++ AI+ G ++ G++ K L S G + Sbjct: 152 EATFFLRVQGDSMINAGIHDGDMLIVDRAIEPVSGKIVIAALD-GELTVKRL-SASGGVV 209 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219 L+ N YPV + + ++ Sbjct: 210 RLLPENPDYPVIEIGAEQELVVWGVV 235 >gi|255608408|ref|XP_002538896.1| conserved hypothetical protein [Ricinus communis] gi|223509911|gb|EEF23487.1| conserved hypothetical protein [Ricinus communis] Length = 233 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 64/243 (26%), Gaps = 57/243 (23%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 + N+ + K G+ ++ + P+ ++ K+ + Sbjct: 1 MAKKNIKQIDIHNKLGIPKSTITGYVKGRS-----LPTAGNVQKLADFFGVLKSDIDPRF 55 Query: 77 FSDGRTTEKK--------------------------------EKEIPLLYFPPSGSGGFF 104 S+ T E++ + + + Sbjct: 56 DSNNIETNSNIIPSTLQKVTSTLSQLEHKRQLNVLDYAETQLEQQNTVEEPQATYYTYNY 115 Query: 105 DSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 G T+ +P D SM P Y GD + Sbjct: 116 YDHAASAGTGQYLNDVQVETIELPVDYDA----------DFVIPVYGDSMEPEYHSGDYV 165 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIA 216 + +I ++ GD + GD K L+ + L SLN Y ++ D I Sbjct: 166 FIKLSINLSDGDIGV-FEYYGDAYIKQLVINDSGAF-LHSLNDKYDDILIDRDSDFRIIG 223 Query: 217 RIL 219 ++ Sbjct: 224 EVI 226 >gi|238894195|ref|YP_002918929.1| putative repressor protein of prophage [Klebsiella pneumoniae NTUH-K2044] gi|238546511|dbj|BAH62862.1| putative repressor protein of prophage [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 241 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 74/221 (33%), Gaps = 27/221 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + LT + L + G++ + + + + +++ L + + + Sbjct: 28 DRIRARRKELKLTQAVLGKLVGVNRVTVTGWESG--DYAPGGSNLQALSAALKCSPKWLI 85 Query: 71 QLLDLPFSDGRTTEKKE----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + P ++ + E KEIP+L + +G S + + + + S Sbjct: 86 DGIGEPDNEEPSFRPTEKFGVKEIPVLSWVQAGEWTESGSPMTRN-DISDWIFTTANLSD 144 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNS---AIQVNCGDRLLIKPR-T 177 + + SM P +G I+I++ + G ++ + + Sbjct: 145 EG---------FALRVRGDSMTNPNGAPSIPEGSIVIVDPDFGSPYEVNGKIVVAQIDGS 195 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + L+ LN Y V V + + + Sbjct: 196 TEATLKKFVIDGPMKY-LVPLNPNYRVLEVNGN-CRIVGVV 234 >gi|170721606|ref|YP_001749294.1| LexA repressor [Pseudomonas putida W619] gi|169759609|gb|ACA72925.1| transcriptional repressor, LexA family [Pseudomonas putida W619] Length = 205 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K+ I + I H PS +A + G S + Sbjct: 4 MDNLTPKRRAILDFIRERITDHGQPPSLADIAIRFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + A + + + G + +L P G G Sbjct: 48 ---KHITALCQAGYIDVTPNQARGIRLAAPLRRPEILEVPVLGQVAAGAPIGPDLGIHEQ 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + P + K + SM GD++ + + G ++ + Sbjct: 105 LLIDPSLFRRTPD--------YLLKVRGDSMINDGIFDGDLVGIRQQGEARDGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + G L+ N Y V Sbjct: 157 D-GEVTIKRLQRQPGG-YRLLPRNPAYAPIDVGPER 190 >gi|159896684|ref|YP_001542931.1| LexA family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|229621224|sp|A9B5H8|LEXA_HERA2 RecName: Full=LexA repressor gi|159889723|gb|ABX02803.1| transcriptional repressor, LexA family [Herpetosiphon aurantiacus ATCC 23779] Length = 214 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 70/225 (31%), Gaps = 24/225 (10%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M+ S ++I++ I + + P+ + R+ + TS +E + Sbjct: 1 MSGLSQRQQRIYDYIKQFIRTNGYAPAIRDIQRELSISSTSVVAYNLRALESKGHIRREG 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +I + + + + + G + N + Sbjct: 61 NISRAIEL-------------INAEQPLPTVLGGQRVPVLGVIAAGQPIPVPNDSANSDD 107 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL-IK 174 +V VPE ++ + + + SM+ GDI++L G+ + Sbjct: 108 SVLVPEEIVGNDKL----GDVYALRVKGYSMVDALIADGDIVLLRYQATAENGEMVAARI 163 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K + G + L N +++E R++ Sbjct: 164 RDENEVTLKRIYW-EGDRVRLQPANVTMEAMYYPSTNVEVQGRVV 207 >gi|251772001|gb|EES52573.1| LexA repressor [Leptospirillum ferrodiazotrophum] Length = 209 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 44/223 (19%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLD-----PTSFNKSKRFGIEGRNRWPSTESI 58 ++I + IDR P+ +A + G+ ++ G+ R R + ++ Sbjct: 11 QQEILDIIDRHIVERGYPPTLREIAAETGIRGISAIKGHIDRLVSKGLLVRKRGARSLAL 70 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + S G G + Sbjct: 71 PR---------------------------------SDASSSLVEVPILGQVAAGLPILSE 97 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + K SM GD +++ + G ++ Sbjct: 98 ENLSGHLSVDPAWVRKGPVFFLKVHGESMKGAAILDGDYVLVRQQETADNGQIVVATID- 156 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G+ K L +RG + L+ N +P V I ++ Sbjct: 157 GETTVKRL-RQRGDQLSLLPENPDFPEIPVRKEGSFRIIGLVV 198 >gi|50914249|ref|YP_060221.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|50903323|gb|AAT87038.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 232 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 56/223 (25%), Gaps = 15/223 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + +T S L ++ + + ++ + + + + Sbjct: 4 GHQLKTARLSKGITQSELGGLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L P++ + K++ + + + + Sbjct: 64 NYKLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 Y D SM P Y G+++++ G + Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G K + + L+SLN Y + I +I+ Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224 >gi|311693576|gb|ADP96449.1| phage repressor [marine bacterium HP15] Length = 327 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 13/192 (6%) Query: 43 RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + IEG R T+ + TN+ + + + Sbjct: 134 KIEIEGFPRS-GTKRDVCVSPQTNKNLQRASKNADELEFFGHMDAWDSNTPLDEDEVELP 192 Query: 103 FFDSGVFPTGNKWNTV------GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 F G V + +S + ++ + SM P+ G Sbjct: 193 LFREVELAAGAGQTQVIENHGAKLRFAKSTLSRAGVVEENAACAFVRGNSMEPVMPDGTC 252 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDI--- 212 + +N+ + G + K L R G I ++S N + + D+ Sbjct: 253 VGVNTGDTTIRDGEIYAIDHDGMLRVKYLHRRPGGGIKIVSQNASEHATEEYSAQDVIDN 312 Query: 213 --EWIARILWAS 222 I R+ W S Sbjct: 313 NIRIIGRVFWWS 324 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 9/131 (6%), Positives = 32/131 (24%), Gaps = 6/131 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + T L + GL + ++ + + ++ A + Sbjct: 3 LGQRLKQARKLAGYTQEQLGERVGLTQAAIGALEKRDSQ------RSNKAAEMAEALGVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ +K ++ F V + + + + Sbjct: 57 LLWLVSGSGPMLEEEARKARKELDQSDARYQWETIFFDCVRESLEAGDNIENLLGITEDE 116 Query: 129 GIYAIQTQDTR 139 Sbjct: 117 FEEITGGGLYA 127 >gi|261493642|ref|ZP_05990161.1| LexA repressor [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494310|ref|ZP_05990804.1| LexA repressor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309959|gb|EEY11168.1| LexA repressor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310642|gb|EEY11826.1| LexA repressor [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 211 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 64/218 (29%), Gaps = 32/218 (14%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I++ + E + P+ +AR+ G + + E K LA Sbjct: 9 QQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 52 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + G G G V E Sbjct: 53 RKGYIEMLSGTSRGIRILVEDENQA-------ANDEDEGLPLIGKVAAGTPILAVEHVEN 105 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG + D K SM + GD+L ++ G ++ + ++ Sbjct: 106 HYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVN-DEVTV 164 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N V + +IE IA Sbjct: 165 KRLEKK-GELIYLHPENDELKPIVVNPAQEYIEIEGIA 201 >gi|92114192|ref|YP_574120.1| SOS-response transcriptional repressor, LexA [Chromohalobacter salexigens DSM 3043] gi|122990477|sp|Q1QVT7|LEXA_CHRSD RecName: Full=LexA repressor gi|91797282|gb|ABE59421.1| SOS-response transcriptional repressor, LexA [Chromohalobacter salexigens DSM 3043] Length = 212 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 63/214 (29%), Gaps = 32/214 (14%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +++ I + P + +AR G E R + + + Sbjct: 9 QQHVFDFIVKTMNELGYPPTRAEIARALGFRSP-------NAAEEHLRALDRKGVIR--- 58 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T + + + + G G G+ + Sbjct: 59 ---------------MIPGTSRGIRLTGEEDAAATSTDGLPVVGEVAAGSPILAAAHIDR 103 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P Y D + + SM GD+L ++ Q+ G ++ + ++ Sbjct: 104 HCPLAPDYFTPRADYLLRVRGLSMKDAGILDGDLLAVHRTQQIRDGQIVVARLD-DEVTV 162 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEW 214 K + G + L++ N + V++ D+E Sbjct: 163 KRFKRQ-GHHVWLVAENADFAPIEVDLRHQDLEI 195 >gi|78355940|ref|YP_387389.1| SOS-response transcriptional repressor, LexA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123768859|sp|Q314F2|LEXA_DESDG RecName: Full=LexA repressor gi|78218345|gb|ABB37694.1| SOS-response transcriptional repressor, LexA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 207 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 4/131 (3%) Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 G G+ + TQ SM+ Sbjct: 74 KHPQTNAVALVAVPIVGTVAAGHPIFAHENITGEVLVEASVVGSGKCFALYTQGDSMIDA 133 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-E 208 GD++I+ GD ++ + K L I+L+ N V Sbjct: 134 GINDGDLIIVRRQPIAEDGDIVIALLD-DEATVKRL-KIDNELIELVPENPRLKPIRVKP 191 Query: 209 MSDIEWIARIL 219 ++ + +++ Sbjct: 192 EDELRILGKVV 202 >gi|313498272|gb|ADR59638.1| Putative phage repressor [Pseudomonas putida BIRD-1] Length = 289 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 7/204 (3%) Query: 22 LTPSG---LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 L+P A + G + S R + + S E+ ++LAA E L Sbjct: 83 LSPGEHMQAAVEPGDNKLSAADLVRQMLARSGKGISEETRQRLLAAAQEPADATLLEAEP 142 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 E I + GG + P ++ Sbjct: 143 LRPGLVGDEVWIAHYDVRAAMGGGQIPHDY--PEMFKDVRVSPSHLRELGVTFSEHHHLK 200 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM P R D LI++ +I+ GD + I K L +++S Sbjct: 201 MVTGWGQSMEPTIRHRDPLIVDVSIREFVGDGIYFFSWGDHIYIKRLQIADEDHFEMISD 260 Query: 199 NCCYPVDTVEMSDIEWIARI--LW 220 N + + + AR+ +W Sbjct: 261 NSRHKDRMIRREETYIQARVLLVW 284 >gi|187776384|ref|ZP_02802325.2| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|189403609|ref|ZP_02796576.2| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|208809522|ref|ZP_03251859.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208813471|ref|ZP_03254800.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|209395751|ref|YP_002271517.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|254794003|ref|YP_003078840.1| phage-related repressor protein [Escherichia coli O157:H7 str. TW14359] gi|291281459|ref|YP_003498277.1| putative repressor protein [Escherichia coli O55:H7 str. CB9615] gi|187767417|gb|EDU31261.1| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|189359678|gb|EDU78097.1| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|208729323|gb|EDZ78924.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208734748|gb|EDZ83435.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|209157151|gb|ACI34584.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|254593403|gb|ACT72764.1| phage-related repressor protein [Escherichia coli O157:H7 str. TW14359] gi|290761332|gb|ADD55293.1| Putative repressor protein [Escherichia coli O55:H7 str. CB9615] gi|326339454|gb|EGD63265.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H7 str. 1125] Length = 204 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 23/203 (11%) Query: 30 KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE 89 G+ + K + T I +I A L + +T + + Sbjct: 1 MVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQP 54 Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RH 140 G E+ + Sbjct: 55 TV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRII 111 Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200 + SM GD+L ++ ++ GD + K L + + ++S N Sbjct: 112 NVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-KLLVISDNK 170 Query: 201 CYPVDT-VEMSD---IEWIARIL 219 Y +E + + +++ Sbjct: 171 SYSPWDPIEKDEMNRVFIFGKVI 193 >gi|153813056|ref|ZP_01965724.1| hypothetical protein RUMOBE_03464 [Ruminococcus obeum ATCC 29174] gi|149830858|gb|EDM85948.1| hypothetical protein RUMOBE_03464 [Ruminococcus obeum ATCC 29174] Length = 236 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 76/240 (31%), Gaps = 28/240 (11%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLA-----RKAGLDPTSFNKSKRFGIEGR-------- 49 K I + L+ LA R + S +K ++ Sbjct: 1 MMIKKDFGSIIANKRKYRKLSQPQLAALLCERGLDVKAHSISKWEKNVNLPNVLQFFALC 60 Query: 50 --------NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY-FPPSGS 100 NR + K+ + N+ + + + + +E P++Y FP Sbjct: 61 EILEISDINRTFQIGTDEKLFSKLNDEGQAKVLDYMNLLMKSGEYIREEPIIYQFPRRTL 120 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + TG ++ EI + D + SM PLY G I+ ++ Sbjct: 121 SLYDLPVSAGTGQFLDSDRFSEIEVGDE---VSSSADFGVRVCGDSMEPLYLDGQIIWIH 177 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G+ + GD K + I L+SLN Y V S ++ +++ Sbjct: 178 KQETLEEGEIGVFFLD-GDAYVKKYH-QSDSGIQLISLNKKYAPIQVTSGSTLKTFGKVV 235 >gi|145629903|ref|ZP_01785693.1| putative transcriptional regulator [Haemophilus influenzae 22.1-21] gi|144977712|gb|EDJ87665.1| putative transcriptional regulator [Haemophilus influenzae 22.1-21] Length = 191 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 11/133 (8%) Query: 97 PSGSGGFFDSGVFPTG-NKWNTVGVPEIRSP----HNGIYAIQTQDTRH-----KTQDTS 146 + G + PEI S G+ I + + S Sbjct: 46 NYKHRIDYLDVRAAAGLTGFENSDYPEIVSSLFLSDEGLLQIIGRKSAVGIKIVNVPTDS 105 Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 M P RKGD + L++ I GD + G + K + G L+S N Y Sbjct: 106 MEPTIRKGDWVFLDTNIDYYNGDGVYAFAIDGALFIKRIQKLVGGGYRLLSDNKDYDPQD 165 Query: 207 VEMSDIEWIARIL 219 + +I A+ + Sbjct: 166 IT-DEICQTAKFV 177 >gi|87120241|ref|ZP_01076136.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein [Marinomonas sp. MED121] gi|86164344|gb|EAQ65614.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein [Marinomonas sp. MED121] Length = 102 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 ++D + SM P GD L+++ V + + G++ + + + ++ Sbjct: 7 SRDIAMYARGDSMEPTIYSGDSLVIDKTMSSVTSDGGIYVINYDGELFVQRVQKQFHGTV 66 Query: 194 DLMSLNCCYPVDTVEMSD---IEWIARILWA 221 ++ S N Y + SD + I R++W+ Sbjct: 67 EITSDNKNYGDIVIPSSDLNTLRIIGRVVWS 97 >gi|325277404|ref|ZP_08143023.1| Cro/CI family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097463|gb|EGB95690.1| Cro/CI family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 235 Score = 78.3 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 15/202 (7%) Query: 10 WEAIDR-MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 W A+ R E LT LA + G+ S + R P ES+ + Sbjct: 20 WIALVRDRMEELGLTQEQLAERVGVSQGSVGHWVN-----KRRQPKIESMNRTFVEIGMP 74 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125 + G+ E++ + +P + W+ + + E Sbjct: 75 HYHVSLQLRVQGQVGEERGTYEVDDDDDDLDLMQYIVCFRYPVLS-WDQLGGAQIAEPAE 133 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 Y Q + ++ +M + +G ++++ Q G ++ + + Sbjct: 134 FEQTDYLAQGKAFWLTVENDAMSAISGRSVPQGMRMLVDPGAQAVPGRLVIARQPGKPAI 193 Query: 182 AKVLISRRGRSIDLMSLNCCYP 203 + L G+ L +LN YP Sbjct: 194 FRELAEEGGQRY-LKALNSNYP 214 >gi|227488726|ref|ZP_03919042.1| repressor LexA [Corynebacterium glucuronolyticum ATCC 51867] gi|227542277|ref|ZP_03972326.1| repressor lexA [Corynebacterium glucuronolyticum ATCC 51866] gi|227091148|gb|EEI26460.1| repressor LexA [Corynebacterium glucuronolyticum ATCC 51867] gi|227181938|gb|EEI62910.1| repressor lexA [Corynebacterium glucuronolyticum ATCC 51866] Length = 236 Score = 78.3 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 21/219 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 K+I E I PS + GL TS + +E + R P+ Sbjct: 26 QKRIMEVIRDSVALRGYPPSIREIGDATGLQSTSSVAYQLKELEKKGFLKRDPNKPRAVD 85 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + ET + + + ++ + + S G + + Sbjct: 86 V-RHLRETAPEKSKVSIDEDGVLKEGFVAPAYIPVVGTISAGLPV---LAEETIEEYMPL 141 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + SM GD +I GD + G+ Sbjct: 142 PSELVG-------DGELFMLEVNGRSMKDAGIMDGDWVICKRQSIAEKGDFVAALID-GE 193 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + L+ N + +D E + + Sbjct: 194 ATVKEFHKDSTG-VWLLPYNESFDPI--PGNDAEILGIV 229 >gi|124515759|gb|EAY57268.1| LexA repressor [Leptospirillum rubarum] gi|206602264|gb|EDZ38746.1| LexA repressor [Leptospirillum sp. Group II '5-way CG'] Length = 205 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 25/207 (12%), Positives = 59/207 (28%), Gaps = 16/207 (7%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETICQLLDL 75 + +L+P + + + + + G P+ I + + Sbjct: 3 RQEKSLSPRQ--------QEALHFIRSYTAQTGYP--PTLREIAAHMEIRGLHAVRKHLE 52 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 +++ L S + G G+ + + + + Sbjct: 53 ALMAKGYLSREKGARTLFAGSLSPNAVPVPVLGRVAAGSLRESPEDHTKTWFVDPDWLPE 112 Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + SM GD ++++S GD ++ G+ K L + G + Sbjct: 113 GPSFFLRVRGDSMKDAAILDGDYVLVSSRPDAKPGDIVVAMID-GESTVKRLSRK-GDRL 170 Query: 194 DLMSLNCCYPVDTVEMS-DIEWIARIL 219 L N YP + D ++ Sbjct: 171 VLSPENSAYPDIPIPTDTDFRITGVVV 197 >gi|194365253|ref|YP_002027863.1| LexA repressor [Stenotrophomonas maltophilia R551-3] gi|229470190|sp|B4SRA9|LEXA_STRM5 RecName: Full=LexA repressor gi|194348057|gb|ACF51180.1| transcriptional repressor, LexA family [Stenotrophomonas maltophilia R551-3] Length = 211 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 57/212 (26%), Gaps = 27/212 (12%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLD--PTSFNKSKRFGIEGRNRWPSTESIFK 60 + + I + I E + + +AR G + + G R ++ Sbjct: 6 TQQAILQLIAERIESEGAPPSQTEIARAFGFKGVRAAQYHLEALEQAGAIRRIPGQA--- 62 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +K E L + P G + Sbjct: 63 -------------RGIRLVQAPPLEKLAEPGLPDNVLRLPVLGRVAAGLPIGADIGSDDF 109 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ D K Q SM+ GD++ ++ + G ++ + + Sbjct: 110 ----VVLDRVFFSPAPDYLLKVQGDSMIDEGIFDGDLIGVHRTRDAHSGQIVVARID-DE 164 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 I K L+ I L+ N Y V Sbjct: 165 ITVK-LLKIAKDRIRLLPRNPDYKPIEVLPDQ 195 >gi|256021955|ref|ZP_05435820.1| phage repressor protein [Escherichia sp. 4_1_40B] gi|293410745|ref|ZP_06654321.1| conserved hypothetical protein [Escherichia coli B354] gi|298381541|ref|ZP_06991140.1| transcriptional regulator [Escherichia coli FVEC1302] gi|291471213|gb|EFF13697.1| conserved hypothetical protein [Escherichia coli B354] gi|298278983|gb|EFI20497.1| transcriptional regulator [Escherichia coli FVEC1302] gi|323936508|gb|EGB32796.1| peptidase S24 [Escherichia coli E1520] Length = 238 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 23/231 (9%) Query: 2 TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 S + +++ + + + + +T +A + G+ + + Sbjct: 5 KSLTTEQLEDAKRLKALYESKKKELGITQYSIADELGITQGAVGHYLNGRN-----ALNV 59 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E +I + + K + + G + Sbjct: 60 EVASGFARLLQVSIADFSQSIAAKVAEQAESLKSDANVRYAGEYRAGKRYPVLSSIQAGS 119 Query: 116 -----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVN 166 + +I IQ K + SM +G ++ ++ + Sbjct: 120 WCEACEPYTIKDIDVWLESDAHIQGNAFWLKVEGDSMTAPVGLSIPEGTFVLFDTGREAI 179 Query: 167 CGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G ++ + + K LI G L LN +P+ + + + I Sbjct: 180 NGSLVIAKLSDSNEATFKKLIIDGGNKY-LKGLNPAWPLVPINGN-CKIIG 228 >gi|323699201|ref|ZP_08111113.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio sp. ND132] gi|323459133|gb|EGB14998.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio desulfuricans ND132] Length = 240 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 65/219 (29%), Gaps = 7/219 (3%) Query: 11 EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 EA++R+ + T LA + +S + +KR + + + Sbjct: 18 EALERIKKATGARTQVQLAEVLDVRQSSISDAKRRCSIPADWFLKLYRSHGLDPDWLSEG 77 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN- 128 + + + + + S G G + Sbjct: 78 VEPVYINADKAKVPADTLLRETPAPYGRMNSRGRLVPVSTMAGADKDAADWEPKSIEELS 137 Query: 129 -GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLI 186 + + K SM P+ +G + ++ + GD + + + + Sbjct: 138 VPESFCRPRLLVVKVDSASMDPVITRGAFVGIDRDQSEHPDGDLCAVHFPHQGLTIRRVF 197 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEW--IARILWASQ 223 + G + L + N Y T+ ++ + R++W Q Sbjct: 198 HQ-GDTFLLKADNDQYSDLTIPAEEMNARTVGRVIWVLQ 235 >gi|209544672|ref|YP_002276901.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5] gi|209532349|gb|ACI52286.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5] Length = 289 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 63/224 (28%), Gaps = 18/224 (8%) Query: 14 DRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 D +A R ++P+ LDP + + E R + A Sbjct: 66 DALARRFAVSPNVFRDDMDPNWEPLDPATLPPAPEDAAEAPPRPRFAAPRAPLGPAPQVP 125 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 P P G P+ P Sbjct: 126 PLGAGRPPPLT--ARRDGPMMEGQFRIPEYNVAPQAGPGALPSNMAVEDGPQPVDHWFLP 183 Query: 129 GIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + SM P Y+ G+ +++++A + + + +V K Sbjct: 184 RRFLGAFTDSPEALVVLRVAGDSMEPDYQAGERVLVDTAHRTPSPPGVYVLWDGFGLVLK 243 Query: 184 VLISRRGR----SIDLMSLNCCYPVDTVEMSDIEWIARIL--WA 221 L G S+ +MS+N YP T + ++ R++ W Sbjct: 244 RLEIVYGSEDPVSVQIMSINPGYPTYTRALDEVHINGRVVGKWV 287 >gi|167628667|ref|YP_001679166.1| lexa repressor [Heliobacterium modesticaldum Ice1] gi|167591407|gb|ABZ83155.1| lexa repressor [Heliobacterium modesticaldum Ice1] Length = 260 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 67/259 (25%), Gaps = 42/259 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-KRFGIEGRNR-WP 53 M + K+ ++E I + PS + + G ++ + KR +G R P Sbjct: 1 MMQLTPKEREVFEVIRKNVREKGYPPSVREIGLQMGWASSSTVHVYLKRLEEKGWIRKDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG------ 107 + ++LA E + P E+ P+ Sbjct: 61 TKPRAIEVLADRQERREWGSNNPPDAMAAVGVSEEGSPVWTTSHLAGPSAGQMAEEQLPG 120 Query: 108 ------------------------VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 G+ E P + + + + Sbjct: 121 DGDNAAEGRSQSAAGPFLQVPLLGNVAAGSPILAAEYVEDYLPIAKSMLGEGEFFGLRVK 180 Query: 144 DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM+ GD +I+ + G ++ D K + L N Sbjct: 181 GDSMIDAGILHGDTVIVRRQAHASNGQIVVALID-DDATVKRFFK-EADHVRLQPENSAL 238 Query: 203 PVDTVEMSDIEWIARILWA 221 V D+ + +++ Sbjct: 239 EPIRVR--DLSILGKVVMV 255 >gi|121611811|ref|YP_999618.1| LexA repressor [Verminephrobacter eiseniae EF01-2] gi|171769494|sp|A1WSJ3|LEXA_VEREI RecName: Full=LexA repressor gi|121556451|gb|ABM60600.1| SOS-response transcriptional repressor, LexA [Verminephrobacter eiseniae EF01-2] Length = 224 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 60/213 (28%), Gaps = 14/213 (6%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +++ + I R P+ A L S N ++ Sbjct: 5 PKLTARQQQVLDLIQNTMARTGAPPTRAEIAAELGFKSANAAEEHLQA---------LAR 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K + + L R+ P S G G+ Sbjct: 56 KGAIELVSGTSRGIRLHSETLRSIHAARSGPSGAGNPGSSPWVLPLIGRVAAGSPILAQE 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 E D K + SM GD+L + + + G ++ + Sbjct: 116 HVEQTYSVENGLFQHKPDYLLKVRGMSMRDAGIIDGDLLAVQATREARNGQIIVAR-LGD 174 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K L R +I+L+ N YPV V+ + Sbjct: 175 DVTVKRL-RRTASTIELLPENPDYPVIVVQPGE 206 >gi|157737925|ref|YP_001490609.1| phage repressor protein, putative [Arcobacter butzleri RM4018] gi|157699779|gb|ABV67939.1| phage repressor protein, putative [Arcobacter butzleri RM4018] Length = 225 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 63/225 (28%), Gaps = 24/225 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + + LT S A + L + + + E I + + + + Sbjct: 4 GKRLKKARDYVGLTQSEFAEQFSLKWDKIKNIETETHKLNPDF--AEMIEQKYSISGWWL 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122 + + + E L+ +F G + Sbjct: 62 LTGKGDMLLNKDSKLQNETNSNLVNIS------YFKDTYAAAGAGAINFDKAPMVMAFDK 115 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTG 178 + SM P + G++L +N ++ D + Sbjct: 116 DFLKVQLGITVFKHLHIIHAIGNSMYPTIQTGEMLFVNPFENEEFKIRDKDIYV-INTPN 174 Query: 179 DIVAKVLISRRGRSID-LMSLNCCYPVDTVEMSDIE---WIARIL 219 ++ K + + I L+S N T+E D + I R++ Sbjct: 175 GVLVKRIKIHPIKPIYILVSDNPQDEDITLEGDDFKACTIIGRVI 219 >gi|297568146|ref|YP_003689490.1| Peptidase S24/S26A/S26B, conserved region [Desulfurivibrio alkaliphilus AHT2] gi|296924061|gb|ADH84871.1| Peptidase S24/S26A/S26B, conserved region [Desulfurivibrio alkaliphilus AHT2] Length = 145 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + A + SM+ DIL+++ +++ G ++ Sbjct: 36 ADDYIE--GRLDLNQLMIANPAATFFVRVAGDSMIGAGIHHHDILVVDRSLEPTDGKVVI 93 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + +I L + N YP + + ++ Sbjct: 94 AVVD-GELTVKRLRRQ-NGTIRLQAENPDYPAIKLNEETSCEVWGVV 138 >gi|116512114|ref|YP_809330.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624033|ref|YP_001032516.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|37936252|emb|CAD89881.1| HdiR protein [Lactococcus lactis subsp. cremoris] gi|116107768|gb|ABJ72908.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|124492841|emb|CAL97796.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|300070804|gb|ADJ60204.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris NZ9000] Length = 252 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 72/245 (29%), Gaps = 44/245 (17%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ + LT S LA K G+ ++ ++ P+ E + K+ + I Sbjct: 4 GQNLKKLRKEAKLTQSQLADKLGMKQNAYVLWEQKATN-----PTLELLEKLADIYDLPI 58 Query: 70 CQLLDLPFS-------DGRTTEKKEKEIPLLYFPP-------------------SGSGGF 103 +L+ P + D + E++ ++ F S Sbjct: 59 QELIKNPDNGAEKQLIDNYRSLTGEQQESVINFTDFLIEQNKADLIDLKTYRRSSLQYAV 118 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILN 160 + G H Y + D + + SM P + I Sbjct: 119 VEDEALSAGFGQTA----NNTGGHYRAYTTENLGRYDGAARVKGESMEPDFPNFSIATFL 174 Query: 161 SAIQVNCGDRL-LIKPRTGD--IVAKVLISRRGRSIDLMSLNCC--YPVDTVEMSD-IEW 214 GD + + G+ + K + + + SLN Y + D Sbjct: 175 HTGFGRSGDVYAIAEGDLGEERLYIKQVFEEEDGNFRIHSLNPDPQYKDFYLGQEDNFRI 234 Query: 215 IARIL 219 I ++ Sbjct: 235 IGPVV 239 >gi|258515363|ref|YP_003191585.1| SOS-response transcriptional repressor, LexA [Desulfotomaculum acetoxidans DSM 771] gi|257779068|gb|ACV62962.1| SOS-response transcriptional repressor, LexA [Desulfotomaculum acetoxidans DSM 771] Length = 206 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 59/224 (26%), Gaps = 36/224 (16%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWPSTE 56 T+ + I + I + PS + GL + + + R R P+ Sbjct: 6 TTQREEAILDVIKQTIRHKGYPPSVREIGVAVGLSSSSTVHGYLRKLEMKGLLRRDPTKP 65 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++L T + L G+ Sbjct: 66 RAIEVLDRTEKESIDFNILNIPIIGK--------------------------VSAGSPVL 99 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + E Y + + SM +GD++++ GD ++ Sbjct: 100 AIENQEGNLQLPLDYTGAGNFFLLRVKGKSMIEAGIFEGDLVLVRQQPAAENGDIIVALL 159 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V+ +++ + +++ Sbjct: 160 EEN-ATVKRFFKEK-EYIRLQPENKLLSPILVK--EVQILGKVV 199 >gi|118580319|ref|YP_901569.1| SOS-response transcriptional repressor LexA [Pelobacter propionicus DSM 2379] gi|118503029|gb|ABK99511.1| SOS-response transcriptional repressor, LexA [Pelobacter propionicus DSM 2379] Length = 200 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 61/226 (26%), Gaps = 40/226 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54 M + S K++ E I ++ PS + G+ + + + +G R + Sbjct: 1 MEALSPRQKQVLEFIRGYVAQNEYPPSLRDIGNYIGVSGNTAVLSHLEALERKGHIRRDT 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 S + I L+ G G Sbjct: 61 GSS------------------------------RRIVLIRDKQHEVLQIPIVGTVQAGIP 90 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 V E P ++ + + SM GD+ ++ GD ++ Sbjct: 91 TLAVESIEGYYPMEK-MQLRGGTFFLRVKGDSMINDAIMDGDLALIRPQETAENGDIVVA 149 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K G I L N + V + D+ I + + Sbjct: 150 LI-EDEATLKRFYR-EGDFIRLEPSNTNFAVIVISAKDVTIIGKAI 193 >gi|294138964|ref|YP_003554942.1| LexA repressor [Shewanella violacea DSS12] gi|293325433|dbj|BAJ00164.1| LexA repressor [Shewanella violacea DSS12] Length = 205 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 59/214 (27%), Gaps = 35/214 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A++ G + E Sbjct: 1 MRPLTPRQAEILELIKRNIIDTGMPPTRAEIAKRLGFKSA---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + I L G G G Sbjct: 46 HLKALAKK-------------GCIEIIPGTSRGIRLTQAAEPEDLGLPLIGQVAAGEPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + +GD+L ++ Q G ++ + Sbjct: 93 AQEHIEQHYKVDPAMFRPSADFLLRVRGDSMKNIGILEGDLLAVHKISQAKNGQIVVAR- 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K + G + L + N Y V++ Sbjct: 152 VEEDVTVKRFEKK-GSMVYLHAENEDYAPIVVDL 184 >gi|260557490|ref|ZP_05829705.1| LexA repressor [Acinetobacter baumannii ATCC 19606] gi|260409116|gb|EEX02419.1| LexA repressor [Acinetobacter baumannii ATCC 19606] Length = 225 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 19/228 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M +K + ++ + + + T + L G+ + + R ++ Sbjct: 1 MEDAKYKDFADRLNALMKAKDSPIKTINELKNAIGVSYEMARRYTLGSA--KPRIEKLQT 58 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + I + ++ ++K E + + G F + Sbjct: 59 LADIFGV-EISYLDHGTKLDNNIDLSDKVGFEGRRVPVISWVAAGSFTPIETVLKDTEIE 117 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIK 174 +P R K SM P + GD + +N IQ D +++ Sbjct: 118 EYLPPNRR-------CGKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVA 170 Query: 175 PRTG-DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219 + K LI + L LN +P +++ D + +++ Sbjct: 171 CAGDSEATFKKLIIEGEGTSKFLEPLNPDWPDKIIKLSEDCRLVGKVV 218 >gi|94987278|ref|YP_595211.1| transcriptional regulator [Lawsonia intracellularis PHE/MN1-00] gi|94731527|emb|CAJ54890.1| predicted transcriptional regulator [Lawsonia intracellularis PHE/MN1-00] Length = 246 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 29/241 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE------SIFK 60 +KI E + + + + + G+ + + + S S+ + Sbjct: 4 QKIGEKLKALRGQE--SRDSFSAHFGIHRNTLAAWESGERLPSLEFLSLLAQQKKLSVAE 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------- 109 IL + L P + + L + S + F Sbjct: 62 ILGEAGVVSTKGLSSPQKVQQEADTTVNSEYKLERERACSQFSWKGNDFTLIPLVKAVLS 121 Query: 110 PTGNKWNTVGVPEIRSPHNGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 G + T E + + SM P GDI +++ Sbjct: 122 AGGGSFETTDKIEGHYAFRNDFLYYRGNPKTMKLFRVDGDSMEPRVSDGDIALIDQGQVA 181 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILW 220 ++ I KVL ++ + L S N Y + I R +W Sbjct: 182 PRAGKIYAVRLEDVIYLKVLNTQP-GKLILSSYNTDYTPIEFDTRGDMADCFSIIGRAVW 240 Query: 221 A 221 Sbjct: 241 I 241 >gi|298368482|ref|ZP_06979800.1| hypothetical protein HMPREF9016_00147 [Neisseria sp. oral taxon 014 str. F0314] gi|298282485|gb|EFI23972.1| hypothetical protein HMPREF9016_00147 [Neisseria sp. oral taxon 014 str. F0314] Length = 234 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 64/220 (29%), Gaps = 29/220 (13%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 P+ K + + F++ + G P+ + + KI T + LL S Sbjct: 17 PADFYNKIDMSASGFSRVWKDGAI-----PTADYLIKIQEVTGCDLNWLLTGQGSPYMNK 71 Query: 84 EKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + G+ + + Y Sbjct: 72 GQAVEVRTHTDGTATDTLGNPINLDEFVFIPRYDVYAAAGHGYPAEDDKPLFCMAFRRYW 131 Query: 133 IQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 I+ + + + SM + GD +++N A D L + + K + Sbjct: 132 IENYVTRQLDKLSVIAVKGDSMEGVLNHGDNILVNHAETT-PRDGLYVIRIDNQLFVKQI 190 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILWA 221 + + S N Y ++++D + I R+ W Sbjct: 191 QKLP-GKLLVKSANPVYEPFEIDLTDDNQNVAIIGRVEWY 229 >gi|171910721|ref|ZP_02926191.1| hypothetical protein VspiD_06095 [Verrucomicrobium spinosum DSM 4136] Length = 407 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 65/240 (27%), Gaps = 36/240 (15%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK------------- 60 + ++ LA+ G+ K + + E + + Sbjct: 161 QALRALLGISRPQLAQWLGVTRQYITKIEGGMPPSKPVMLLVERLEEEARQNADLNGKPR 220 Query: 61 --------------ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 L + L + + Sbjct: 221 DVEPVSRGFAIAGAALETLSRAQIASLQNSGGAHAAQPTRLTPRASGVQVEAPVFSARSV 280 Query: 107 GVFPTGNKWNTVGVPEIRSPHNG----IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 + + + P + + H Q + +M P Y +G I I+ Sbjct: 281 PLLAMHEAAD-LPTPAVAAHHGRQHLAFVVEDEQAFAVRINGEAMAPHYPEGCIAIICPG 339 Query: 163 IQVNCGDRLLIKPR--TGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + GD +L + R G L+ + G S+ L S + YP TV+ D+ W+A + Sbjct: 340 LPSRNGDLVLARLRDERGGGTILRLVHFIQDGESLVLTSTHAAYPPLTVQKEDLLWLAPV 399 >gi|149022031|ref|ZP_01835993.1| phage transcriptional repressor [Streptococcus pneumoniae SP23-BS72] gi|147929875|gb|EDK80864.1| phage transcriptional repressor [Streptococcus pneumoniae SP23-BS72] Length = 263 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 68/261 (26%), Gaps = 59/261 (22%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I E I ++ +T LA++ G+ ++ + PS I K+ Sbjct: 8 QIIAENITHFRKQRGITQKELAKEVGITASTMTDYMKLRS-----APSFGVIQKLADYFG 62 Query: 67 ETICQLLDLPFSDGRTTEK------------------KEKEIPLLYFPPSGSGGFFDSGV 108 + + + + +L + Sbjct: 63 VKKSDIDTTFKEESTNSLPDAPDSLTQQIMDKVVQLTPPNQKIVLRTSEELLESQNEEET 122 Query: 109 -------------------------FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 F G ++ I D K Sbjct: 123 KINEVSEVISLYQVEVVSETAAASGFNYGFGYDDTDRETIEVDERP----PRHDIATKVS 178 Query: 144 DTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P Y+ GDIL +++ + GD +I K + + L+SLN Y Sbjct: 179 GDSMQPDYQDGDILYLVDKGLTTYNGDLAIIAY-GDRSYFKKIY-TENGRLRLVSLNDKY 236 Query: 203 PVDTVE---MSDIEW-IARIL 219 ++ D I ++ Sbjct: 237 EDIILDFPPAEDTHIKIYAVV 257 >gi|300214145|gb|ADJ78561.1| CI-like repressor, phage associated [Lactobacillus salivarius CECT 5713] Length = 258 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 67/247 (27%), Gaps = 42/247 (17%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ + + + R+ G+ ++ + R PS ++ K+ N Sbjct: 17 ISATLNELLQLSGKKQIDITRQTGIPASTLTGYFKGT-----RLPSPVNVQKLADFFNVL 71 Query: 69 ICQLLDLP-------------------------------FSDGRTTEKKEKEIPLLYFPP 97 + + ++++ ++ Sbjct: 72 KSDVDPRFKKISESDTDGLRXXLLSKYEKLNTENKKKVVDYADNRLKDQKRQQNKIHPIN 131 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 ++ + E D + SM P + G I+ Sbjct: 132 ENDNTYYVDVLGSVSAGAGEWLTDEQHEEVMVNNEPPAHDFALRVNGDSMTPTFSDGQII 191 Query: 158 ILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEM-SDI 212 +N +V ++ GD K ++ R L+SLN Y ++ D Sbjct: 192 YVNKIYDTXEVRNNQFVI-AELNGDSYVKKIVFDDNRKNCRLISLNKKYADIEIKKSDDF 250 Query: 213 EWIARIL 219 + + ++ Sbjct: 251 KIVGVVI 257 >gi|215919180|ref|NP_820400.2| S24 family peptidase [Coxiella burnetii RSA 493] gi|206584064|gb|AAO90914.2| repressor protein C2 [Coxiella burnetii RSA 493] Length = 238 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 19/210 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S + + ++ S LAR+ G+ ++ G+N P +I Sbjct: 23 MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 73 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118 I I QL+ + + P S P + V Sbjct: 74 IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 133 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + Q +M PL+ G +I+ + D ++++ + Sbjct: 134 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 187 Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 + + +I+ L SLN V Sbjct: 188 PEARLRQIITEGNDRY-LKSLNPELEKLEV 216 >gi|312878315|ref|ZP_07738232.1| Peptidase S24/S26A/S26B, conserved region [Caldicellulosiruptor lactoaceticus 6A] gi|311794915|gb|EFR11327.1| Peptidase S24/S26A/S26B, conserved region [Caldicellulosiruptor lactoaceticus 6A] Length = 190 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 I + + K + SM + DI I+ D ++ G+I K Sbjct: 95 IISDPERYFAIKVKGDSMVEANIKDRDIAIVQKCNTAENRDIVIAWLD-GEITVKRFCKM 153 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ L+ N Y ++ ++ + +++ Sbjct: 154 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 183 >gi|187478005|ref|YP_786029.1| LexA repressor [Bordetella avium 197N] gi|123738735|sp|Q2L247|LEXA_BORA1 RecName: Full=LexA repressor gi|115422591|emb|CAJ49116.1| LexA repressor [Bordetella avium 197N] Length = 213 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 60/216 (27%), Gaps = 29/216 (13%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-E 56 T + ++I + I + R P + +A+ G R P+ E Sbjct: 3 TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA + E G G+ Sbjct: 46 DHLKALARKGAIELTAGASRGIRLKDAEPTPS----PILASLSQLLLPLVGRVAAGSPIL 101 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + Q D K + SM +GD+L + + + G ++ + Sbjct: 102 AAEHVEREVGVDPSLFSQAPDYLLKVRGMSMRDAGILEGDLLAVKKSSEARNGQIIVAR- 160 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K L G I+L+ N + V D Sbjct: 161 LGDDVTVKRLQRH-GSRIELLPENPEFSPILVAPDD 195 >gi|317405210|gb|EFV85549.1| LexA repressor [Achromobacter xylosoxidans C54] Length = 216 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 62/210 (29%), Gaps = 24/210 (11%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62 ++I + I + R P + +A+ G R P+ E K L Sbjct: 9 QQQILDLIRQTVARPGFPPTRAEIAQALGF-----------------RSPNAAEDHLKAL 51 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + + PL P G G+ E Sbjct: 52 ARKGAIELTAGASRGIRLKDNSSTPSQAPLP-LPGLAQLLLPLVGRVAAGSPILATEHVE 110 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + Q D K + SM +GD+L + A + G ++ + D+ Sbjct: 111 REIGVDSSLFAQAPDYLLKVRGMSMRDAGILEGDLLAVKKASEARNGQIVVAR-LGDDVT 169 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L + I+L+ N + V VE Sbjct: 170 VKRLQRQ-NGRIELLPENPDFNVIVVEADQ 198 >gi|226354933|ref|YP_002784673.1| LexA repressor [Deinococcus deserti VCD115] gi|226316923|gb|ACO44919.1| putative LexA repressor [Deinococcus deserti VCD115] Length = 240 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 61/217 (28%), Gaps = 18/217 (8%) Query: 13 IDRMAERHNLTPSGLARKAG--------LDPTSFNKSKRFGIEGRNRWPSTES-IFKILA 63 + L + ++ + + ++ +R + P+ + + + L Sbjct: 21 LRERRAALGLQQADISARTASLSGETGRVTQPYLSRLERGTRLLSSLTPARQDALRRALE 80 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-E 122 T LP E + L+ P + + VP Sbjct: 81 LTASEWIARTGLPLLTPVPGEDVLGTLELVRVPVRALATAGLPLTEDFESIIDHELVPLR 140 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIV 181 P + +Q R GD + +++ + G ++ + Sbjct: 141 DHRPGMLVLEVQGDSMT----TDGGAGGIRSGDRIYVDAGDLDLREGRVYVLHVPGLGLT 196 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L GR + L S N +P V + + R+ Sbjct: 197 VKRLRRY-GRELWLTSDNPDHPP--VRPEEATTVGRV 230 >gi|237737314|ref|ZP_04567795.1| LexA repressor [Fusobacterium mortiferum ATCC 9817] gi|229421176|gb|EEO36223.1| LexA repressor [Fusobacterium mortiferum ATCC 9817] Length = 230 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 60/223 (26%), Gaps = 19/223 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + +++ A++ G + R PS + I N + Sbjct: 6 GKYLSDYLDKNKYKIENFAKEVGYSTGLISHYTTG-----KRSPSYKFIEAFFKKFNFSN 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF---------PTGNKWNTVGV 120 + ++ R + + S F GN + Sbjct: 61 EEKEEVLKILARDKMPDSLKKLKTQINNTQSNAIIIEEEFINVPVKAKASAGNGYIN-CC 119 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 ++ + SM PL + G ++++ ++ I + Sbjct: 120 EDLYMKTIRKNGFHEHCYLIEVCGNSMEPLIQDGAFVVVDPYQTDYIEGKIYIVKLDEET 179 Query: 181 VAKVLISRRG-RSIDLMSLNCCYPVDTVE---MSDIEWIARIL 219 K + + I L S+N Y V + + + R + Sbjct: 180 FIKRIYFNTDLKIIILKSINPKYDDIYVSKNKAENFKIMGRAV 222 >gi|229551634|ref|ZP_04440359.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229314952|gb|EEN80925.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 260 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 29/258 (11%), Positives = 56/258 (21%), Gaps = 56/258 (21%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + A ++ ++ + P + I + Sbjct: 4 KNLKYLRAKRGYDQQTFAEMIHRSVSTVSEWESGKYT-----PKAGILADIANMFGVKLD 58 Query: 71 QLLDL-------------------------------------PFSDGRTTEKKEKEIPLL 93 +++ E Sbjct: 59 DMMNKDLSKSVDNTVIEKTTNTMRKLHPVRQQKVYTYAEKQLNEQQNPDNVVSLDEAHAE 118 Query: 94 YFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 G+ G + P D K SM P Y Sbjct: 119 RNLDEQVFNVEVDGIVAAGYGAFNDDRYEPMDTVKIPDSAIPSHYDYCFKVVGDSMSPYY 178 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---------Y 202 G+ + + V G ++ K LI + L SLN Y Sbjct: 179 EDGEFVFVQKTQDVTNGMIAVVDID-DMTFIKKLI-LEQDRLCLRSLNDDVDEETGKRIY 236 Query: 203 PVDTVEMSD-IEWIARIL 219 P + +D IE I +++ Sbjct: 237 PDFYADDTDNIEVIGKVV 254 >gi|296272637|ref|YP_003655268.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299] gi|296096811|gb|ADG92761.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299] Length = 215 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 68/216 (31%), Gaps = 16/216 (7%) Query: 7 KKIWEAI-DRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I E + D +++ H + +A G++ T+F K K P E + + Sbjct: 5 NEIIEKLKDILSQEHGNKKVLDKDVAAALGIEETNFRKQKHRNSI-----PYFEIMSFLA 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + + + +GG + ++ + Sbjct: 60 KRNISINWFFFNQLPESLIESTSNYIILKYQRTVTASAGGGAINYEL------DSTPLVI 113 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + I + K SM P + ++ ++ + + + + Sbjct: 114 DKQLLDHINSRYKYTEVIKVFGESMEPDIKDESLVFIDKSKTDINSTGVYLINTNDGLYI 173 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + + L S N + T+ + D++ + R+ Sbjct: 174 KCI-KVENDKVILKSNNQAFDDITLHIDDVDIVGRV 208 >gi|225025059|ref|ZP_03714251.1| hypothetical protein EIKCOROL_01948 [Eikenella corrodens ATCC 23834] gi|224942151|gb|EEG23360.1| hypothetical protein EIKCOROL_01948 [Eikenella corrodens ATCC 23834] Length = 271 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 69/258 (26%), Gaps = 63/258 (24%) Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 +R + S LAR+ + + K + G E PST ++ KI A+ + L Sbjct: 17 KRLG-SVSELARRVDVAYPTATKWVKEGAE-----PSTTNLIKIADASQVNLLWLATGQG 70 Query: 78 SDGRTT-----------------------------------------EKKEKEIPLLYFP 96 + + Sbjct: 71 APYLEGEQSISDELEQEGQRILQEQLKKTDQIVKSLQEARRISRIGSTQPLDVNGNAVDI 130 Query: 97 PSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPHNGIY------AIQTQDTRHKTQDTSMLP 149 F G W P+ + + + T + SM+ Sbjct: 131 DEFVFIPFYDVSVSAGQGAWVDNDRPKSCLAFRRDWLESYITSDFSTLTVVMVKGDSMVG 190 Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 + D ++++ + D L +I K + S+ + S N Y TV + Sbjct: 191 VLNDKDAILVDHSQTEAS-DGLYALRIGNEIFVKRVQRLPD-SLLITSANQEYQPFTVPL 248 Query: 210 S-------DIEWIARILW 220 ++ I +++W Sbjct: 249 ENGDAASSNVSIIGKVVW 266 >gi|332560967|ref|ZP_08415285.1| putative phage repressor [Rhodobacter sphaeroides WS8N] gi|332274765|gb|EGJ20081.1| putative phage repressor [Rhodobacter sphaeroides WS8N] Length = 251 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 16/141 (11%) Query: 97 PSGSGGFFDSGVFPTGNKWNT------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 S + G+ + + R I T + + SM P Sbjct: 105 EDYVPVPVHSALLAAGDGCDNAGDDVVDHLAFRRDWLRRIGVSLTAAALARAKGDSMSPS 164 Query: 151 YRKGDILILNSAIQVNCGDR----------LLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200 GD+L++++A + K + I L+S N Sbjct: 165 IHDGDMLLIDTAQDDAPFKVREPADTRPAMIYALRDDLGARVKRIERIAPGRIMLLSDNP 224 Query: 201 CYPVDTVEMSDIEWIARILWA 221 + + D+ + R++W Sbjct: 225 AFAPEVKSDGDVTILGRVVWW 245 >gi|186476666|ref|YP_001858136.1| putative phage repressor [Burkholderia phymatum STM815] gi|184193125|gb|ACC71090.1| putative phage repressor [Burkholderia phymatum STM815] Length = 331 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 23/221 (10%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA------------------- 64 PS +A LDPT+ +R + + E++ + A Sbjct: 101 PSEIATPDNLDPTTLTGPQRIRASLGPQNLTAETLASVAAVGADVASLWLAGQGPEPTLI 160 Query: 65 ----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 T T + + Sbjct: 161 QAVALQNTYGVNSVWILKGKGTPGVAVRYDDEWRPVTFKNWHLVPVKGMAQLGDNGYWAE 220 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + ++ + + SM P + G+ ++L +N GD +L+K + G + Sbjct: 221 IEYGEGYVATASLDKDAYAVRCKGDSMRPRIKDGEYVVLEPNQPINPGDEVLVKAKDGRV 280 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + K + I L+S N + +VE ++IE + + W Sbjct: 281 MVKEFVYEAQGKIFLLSTNEAHGKISVERANIEHMHYVGWI 321 >gi|283769265|ref|ZP_06342169.1| peptidase S24-like domain protein [Bulleidia extructa W1219] gi|283104241|gb|EFC05620.1| peptidase S24-like domain protein [Bulleidia extructa W1219] Length = 275 Score = 77.9 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 69/268 (25%), Gaps = 60/268 (22%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN------------------ 50 + E I + L+P L K G D + + ++ IE Sbjct: 5 VGERIRKRRIELKLSPEDLGNKIGKDRATIYRYEKGEIENLPVGIIAPLATALHTTPQYL 64 Query: 51 -----------RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL------ 93 R ++I L + + + + Sbjct: 65 MGWEEDPNLTERDNDLDNISDFLFENGYRLSCENYDDDYFLIKKDGETVNSFFVGDLLSI 124 Query: 94 -----------------YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 + GV P G + +I + + + Sbjct: 125 YKNAIKNQTLSIDVFLKNSTNNFIHQIPVLGVVPCGEPIEAIE--DIIEWVDVVPSQTKD 182 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P GDILI+ +VN G ++K D K L+ I L+ Sbjct: 183 HFGLIAKGNSMSPYILDGDILIVKYTPEVNSGKIAIVKVNGDDATCKRLMINDAG-ITLI 241 Query: 197 SLNCCYPVDTVEMSDIE-----WIARIL 219 N Y +++ + ++ Sbjct: 242 PNNPLYKTKIFTPQEVQDKPVSIVGEVV 269 >gi|161831001|ref|YP_001597255.1| peptidase S24-like domain-containing protein [Coxiella burnetii RSA 331] gi|81628752|sp|Q83BT6|Y1416_COXBU RecName: Full=Uncharacterized HTH-type transcriptional regulator CBU_1416 gi|161762868|gb|ABX78510.1| peptidase S24-like domain protein [Coxiella burnetii RSA 331] Length = 216 Score = 77.9 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 19/210 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S + + ++ S LAR+ G+ ++ G+N P +I Sbjct: 1 MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118 I I QL+ + + P S P + V Sbjct: 52 IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 111 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + Q +M PL+ G +I+ + D ++++ + Sbjct: 112 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 165 Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 + + +I+ L SLN V Sbjct: 166 PEARLRQIITEGNDRY-LKSLNPELEKLEV 194 >gi|145640116|ref|ZP_01795706.1| putative transcriptional regulator [Haemophilus influenzae PittII] gi|145270773|gb|EDK10700.1| putative transcriptional regulator [Haemophilus influenzae PittII] Length = 251 Score = 77.9 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 11/133 (8%) Query: 97 PSGSGGFFDSGVFPTG-NKWNTVGVPEIRSP----HNGIYAIQTQDTRH-----KTQDTS 146 + G + PEI S G+ I + + S Sbjct: 106 NYKHRIDYLDVRAAAGLTGFENSDYPEIVSSLFLSDEGLLQIIGRKSAVGIKIVNVPTDS 165 Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 M P RKGD + L++ I GD + G + K + G L+S N Y Sbjct: 166 MEPTIRKGDWVFLDTNIDYYNGDGVYAFAIDGALFIKRIQKLVGGGYRLLSDNKDYDPQD 225 Query: 207 VEMSDIEWIARIL 219 + +I A+ + Sbjct: 226 IT-DEICQTAKFV 237 >gi|320658814|gb|EFX26482.1| putative phage repressor protein [Escherichia coli O55:H7 str. USDA 5905] Length = 238 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 65/211 (30%), Gaps = 15/211 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I + LT +A+ G+ S K + + P E+++ + + Sbjct: 17 NTISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSK-----PDGENLYLLSKLLS 71 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ +L + + + + P + + +P I++ Sbjct: 72 KSPEWILYGKDGHDKADDLRLNQYPYISDNIARLPVLTWEQAGYWDMSCPVTEIPGIKNW 131 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRL-LIKPRT 177 + + + +M LP G +++ G + + T Sbjct: 132 VDVMTKTAENSFLLHVEGDAMTNSNGLPTIPDGSTVLITPCSSNIRELVGKIILIQLEGT 191 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ K + I L+SLN Y + Sbjct: 192 PNVTLKKVAIDGPN-IYLLSLNPLYKPIELN 221 >gi|296876982|ref|ZP_06901026.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432017|gb|EFH17820.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 225 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 51/213 (23%), Gaps = 8/213 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----NRWPSTESIFKILAATNET 68 + LT + + + +++ + E R S+ + ++ Sbjct: 7 LKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINKDS 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L + + L S + Sbjct: 67 ALYTYPLLTPPHQKKVDQLASQLLEQQQKVVSMTAYKVLSIELAAGLGHTFYDNETDYET 126 Query: 129 GIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + D SM PLY G + ++ G + G K + Sbjct: 127 VYFDQEIQHDFASWVSGDSMEPLYPNGSVALMKQTGFDYDG-AVYALIWNGKTYIKKVYR 185 Query: 188 RRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + L S+N Y + + + ++ Sbjct: 186 -EAEGLRLESINPDYDDLFAPYEDEPKIVGIVV 217 >gi|260889630|ref|ZP_05900893.1| putative prophage LambdaCh01, repressor protein [Leptotrichia hofstadii F0254] gi|260860236|gb|EEX74736.1| putative prophage LambdaCh01, repressor protein [Leptotrichia hofstadii F0254] Length = 219 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 28/225 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAG------LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 I + + + +++ L+ L K + + ++ + E +++ Sbjct: 2 NIGKRLKELRKKNALSMDSLVEKLNRKYNLNITKSMISRWENNLSEPSSKFI-------- 53 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T + K P G G + + Sbjct: 54 ------TAYAKFFNIDLNYLAGITDIKNPAPESLTPIEILEIPMYGKASAGTGYINLSEE 107 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP---LYRKGDILILNS---AIQVNCGDRLLIKP 175 P + K SM G I I++ + + ++ + Sbjct: 108 IGTYPVPQDI-YRKGIFAIKVSGESMTGLDKSIPDGSIAIVDPELCSNPASLNGKVCVFE 166 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI-ARIL 219 + K LI + I L S N Y V +++ + R++ Sbjct: 167 YNDETYIKQLIIDKQGIIRLRSFNPSYDDIIVLNAELLYCKGRVI 211 >gi|90961224|ref|YP_535140.1| cI-like repressor, phage associated [Lactobacillus salivarius UCC118] gi|90820418|gb|ABD99057.1| cI-like repressor, phage associated [Lactobacillus salivarius UCC118] Length = 258 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 68/247 (27%), Gaps = 42/247 (17%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ + + + R+ G+ ++ + R PS ++ K+ N Sbjct: 17 ISATLNELLQLSGKKQIDITRQTGIPASTLTGYFKGT-----RLPSPVNVQKLADFFNVL 71 Query: 69 ICQLLDLP-------------------------------FSDGRTTEKKEKEIPLLYFPP 97 + + ++++ ++ Sbjct: 72 KSDVDPRFKKISESDTDGLRIRLLSKYEKLNTENKKKVVDYADNKLKDQKRQQNKIHPIN 131 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 ++ + E D + SM P++ G I+ Sbjct: 132 ENDNTYYVDVLGSVSAGTGEWLTDEQHEEVMVNNEPPAHDFALRVNGDSMTPIFSDGQII 191 Query: 158 ILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEM-SDI 212 +N +V ++ GD K ++ R L+SLN Y ++ D Sbjct: 192 YVNKIYDTEEVRNNQFVI-AELNGDSYVKKIVFDDNRKNCRLISLNKKYADIEIKKSDDF 250 Query: 213 EWIARIL 219 + + ++ Sbjct: 251 KIVGVVI 257 >gi|330900329|gb|EGH31748.1| LexA repressor [Pseudomonas syringae pv. japonica str. M301072PT] gi|330981302|gb|EGH79405.1| LexA repressor [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 202 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 45 --KHIVALTEAGLIEVVPHQARGIRLLNTEPRPELLEIPVLGRV-----AAGVPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 98 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + I L+ N Y V Sbjct: 154 D-GEVTIKRLQRRADQ-IRLLPRNPAYEPIIVTPDQ 187 >gi|313888262|ref|ZP_07821933.1| repressor LexA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845665|gb|EFR33055.1| repressor LexA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 206 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 55/215 (25%), Gaps = 29/215 (13%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I R E + P+ + + TS ++ K+ Sbjct: 11 EILFFIKRFIESKSYPPTVREICAGCNIKSTSTVYY---------------ALEKLETTN 55 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + P + + N +T+ +P Sbjct: 56 YIRKDASKTRAIEIVPQDDDILMLKKKTVDVPVLGRVTAGAPILAVQNIEDTMPLPVD-- 113 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + K SM+ + GD +I+ + G+++ + + K Sbjct: 114 -----FVSDKELFILKVSGESMINVGIFDGDYVIIEKSNCARNGEKV-LALIEDEATIKT 167 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L N + IE + +I+ Sbjct: 168 YYKEEN-RFRLQPENDTMEPLYFDN--IEILGKIV 199 >gi|70731061|ref|YP_260802.1| LexA repressor [Pseudomonas fluorescens Pf-5] gi|68345360|gb|AAY92966.1| LexA repressor [Pseudomonas fluorescens Pf-5] Length = 202 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 34/215 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT+ S ++ I I H PS +++ G S + Sbjct: 1 MTTLSPRRSAILTFIRERIADHGQPPSLAEISQAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + A E ++ + G + + LL P G Sbjct: 45 ---KHVLALTEAGFIEVNPHQARGIRLLNQPRRPELLEIPVLGRVAAGAPIGVDA----- 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 + G+++ + Q SM+ GD++ + + +V G ++ + Sbjct: 97 --DIHGQLLLDPGMFSRTPD-YLLRVQGDSMIDDGIFDGDLVAVRRSSEVRNGQTVIARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G++ K + G+ I L+ N Y V Sbjct: 154 D-GEVTIKRFERK-GQGIRLLPRNPAYQPIEVTAD 186 >gi|212212220|ref|YP_002303156.1| repressor protein C2 [Coxiella burnetii CbuG_Q212] gi|212010630|gb|ACJ18011.1| repressor protein C2 [Coxiella burnetii CbuG_Q212] Length = 237 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 19/210 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S + + ++ S LAR+ G+ ++ G+N P +I Sbjct: 22 MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 72 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118 I I QL+ + + P S P + V Sbjct: 73 IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 132 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + Q +M PL+ G +I+ + D ++++ + Sbjct: 133 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 186 Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 + + +I+ L SLN V Sbjct: 187 PEARLRQIITEGNDRY-LKSLNPELEKLEV 215 >gi|86134485|ref|ZP_01053067.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85821348|gb|EAQ42495.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 258 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 56/219 (25%), Gaps = 18/219 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-- 68 + I + LT LA + + + + + P+ E + Sbjct: 6 KNIKHLRNLKKLTQEALAEELSVTRSRISSYEENRS-----SPTIEFLIDFSKYFKIPID 60 Query: 69 ---ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEI 123 L K P+ + + G ++ E Sbjct: 61 IIIKNDLTKANDVSFIEVGNKRVLFPITVDSENENLIEVIPAKASAGYLLGYDDPEYIEQ 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDI 180 + + + SMLP+ + G ++ + G +I + + Sbjct: 121 LEKIKLPFLPTGKHRAFPIKGDSMLPM-KDGSYVVAEFVEDIKNAKSGYSYIIVTKNDGM 179 Query: 181 VAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 K + L N Y V +S++ + + Sbjct: 180 TYKRIENLIEEKGCFLLKPDNPSYQSYQVPISEVLELWK 218 >gi|261417204|ref|YP_003250887.1| transcriptional repressor, LexA family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373660|gb|ACX76405.1| transcriptional repressor, LexA family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 217 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 72/227 (31%), Gaps = 35/227 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPST 55 MT+ ++I+E I + ++ +++ P+ + + T+ +S + + NR P Sbjct: 11 MTAR-QEEIYEYIKKYSKENHMPPTVREIGNHFDISSTNGVRSILAALIKKGYINRSPRL 69 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 +IL+ E+ + S + G G Sbjct: 70 SRGIEILSDDKESSKE------------------------VASNTIEIPIVGRVAAGTPI 105 Query: 116 NTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 V + + A ++ + + SM+ GD++ + G+ ++ Sbjct: 106 LAVQNLEGTVTIDRDFLACRSDVFALRVKGDSMINAGIFDGDLIFARQQKTADLGEIVVA 165 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + + K ++L N Y V D R++ Sbjct: 166 QID-NEATVKYYHP-SADHVELRPANPKYKPIIVNNRKDFSIAGRVI 210 >gi|221632683|ref|YP_002521904.1| LexA repressor [Thermomicrobium roseum DSM 5159] gi|221155504|gb|ACM04631.1| LexA repressor [Thermomicrobium roseum DSM 5159] Length = 214 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 55/220 (25%), Gaps = 23/220 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I E I + P+ + G+ TS + + + Sbjct: 9 QQEILEFIRHFVDERGYPPTVREIQAGLGISSTSVVDY------------NLNVLEYLRL 56 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 +PL+ +G + G V + Sbjct: 57 IRRNRNISRGIELLDRRLGRHDAVVRVPLVGTIAAGQPLPVLEPIEVDGAA-EYVELGSQ 115 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDIV 181 H + + SM+ GDI++L GD + R + Sbjct: 116 LVGHPA-----RDLFALRVKGQSMIDALIDDGDIVVLRRQATAENGDTVAAWLRREQETT 170 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 K G + L N + ++E ++L Sbjct: 171 LKRFYR-EGNLVRLQPANATLQPIYTTIDNVEIQGKLLLV 209 >gi|193077219|gb|ABO12009.2| transcriptional regulator Cro/CI family [Acinetobacter baumannii ATCC 17978] Length = 221 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 66/219 (30%), Gaps = 20/219 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I NL L R G + + + + +S+ ++L T Sbjct: 3 QVSERIRARMSELNLRHVDLMRGTGAGKATVSSWIKGAVN--PSATYIDSLAQVLKTTPT 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---GFFDSGVFPTGNKWNTVGVPEIR 124 + + + + + P S G + + + + Sbjct: 61 WLLTGQINDTASNMDNNVDINSMASVIYAPVLSWVQAGNWTDMDAVNIQECEKLPLVPGA 120 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRLLIKPRTGDIV 181 + + + S P + +G+ + ++ + G+ ++++ + Sbjct: 121 G---------KKSFYLEVKGLSNAPYFEEGEKICIDPDYVLEDIQTGEMVVVRC-GNEAT 170 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 K L++ L LN + + + D + + + Sbjct: 171 FKALVAEPNG-YYLKPLNPNWSEQIIPLKEDCILVGKYV 208 >gi|75761245|ref|ZP_00741229.1| LexA repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491280|gb|EAO54512.1| LexA repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 164 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 14/159 (8%), Positives = 38/159 (23%), Gaps = 10/159 (6%) Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L + ++ + E + P + + +P Sbjct: 8 LEEKGYIRRDPTKPRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPITAVESVEEHFPLP 67 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Q + SM GD++++ G+ ++ + Sbjct: 68 ASIVSGAD------QVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVALTEDNEA 121 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N ++ + I +++ Sbjct: 122 TVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 157 >gi|322388988|ref|ZP_08062558.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321144293|gb|EFX39701.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 247 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 51/213 (23%), Gaps = 8/213 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATNETIC 70 + LT + + + +++ + E + + + Sbjct: 29 LKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINKDS 88 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIRSPHN 128 L P +K ++ L+ V Sbjct: 89 ALYTYPLLTPPHQKKVDQLASQLFEQQQKVVSLTAYKVLSVELAAGLGHTFYDNETDYET 148 Query: 129 GIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + D SM PLY G + ++ G + G K + Sbjct: 149 VYFDQEIQHDFASWVSGDSMEPLYPNGSVALMKQTGFDYDG-AVYALIWNGKTYIKKVYR 207 Query: 188 RRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + L S+N Y + + + ++ Sbjct: 208 -EAEGLRLESINPDYDDLFAPYEDEPKIVGIVV 239 >gi|254524275|ref|ZP_05136330.1| LexA repressor [Stenotrophomonas sp. SKA14] gi|219721866|gb|EED40391.1| LexA repressor [Stenotrophomonas sp. SKA14] Length = 211 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 23/210 (10%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I + I E + + +AR G + + + E I Sbjct: 6 TQQAILQLIAERIESEGAPPSQTEIARAFGF---------KGVRAAQYHLEALEQAGAIR 56 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + +K E L + P G + Sbjct: 57 RIPGQAR-----GIRLVQAPPVEKLAEPGLPDSVLRLPVLGRVAAGLPIGADIGSDDF-- 109 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + ++ D K Q SM+ GD++ ++ + G ++ + +I Sbjct: 110 --VVLDRVFFSPAPDYLLKVQGDSMIDEGIFDGDLIGVHRTRDAHSGQIVVARID-DEIT 166 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N Y V Sbjct: 167 VK-LLKIAKDRIRLLPRNPDYRPIEVLPDQ 195 >gi|319779608|ref|YP_004130521.1| SOS-response repressor and protease LexA [Taylorella equigenitalis MCE9] gi|317109632|gb|ADU92378.1| SOS-response repressor and protease LexA [Taylorella equigenitalis MCE9] Length = 222 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 71/223 (31%), Gaps = 21/223 (9%) Query: 2 TSFSHKKI--WEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + + ++I I + + P + ++ G + S N ++ Sbjct: 3 SKLTSRQIEVLNIIKSHISKSGIPPTRAEISSALGFN--SLNSAEMHIKA---------L 51 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + K + + L + + K+ + G G+ Sbjct: 52 VKKGALIAIPGVSRGLRINPAFESEFLDSVKDELSNSEASNDFLSLPIVGRVAAGSPIEA 111 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + E + + QT D + + SM+ + + D+L + A + N ++ + Sbjct: 112 IEHHEDQLLFHSSIFSQTPDYLLRVKGDSMIDIGIMEDDLLAVKRADEANNRQVIVARLD 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIA 216 G++ K L I+L+ N Y + IE IA Sbjct: 172 -GEVTVKRLRKLPD-HIELIPENSAYKPIVIRPDQDFSIEGIA 212 >gi|213964704|ref|ZP_03392904.1| LexA repressor [Corynebacterium amycolatum SK46] gi|213952897|gb|EEB64279.1| LexA repressor [Corynebacterium amycolatum SK46] Length = 233 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 66/223 (29%), Gaps = 20/223 (8%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57 ++I + I PS + GL+ TS + +E + P + Sbjct: 16 QRRILDVISDAVVLRGYPPSIREIGDAVGLNSTSSVAYQLKELEKKGFLRRDPHKPRAVN 75 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + ++ + T + +++P F P + + + + Sbjct: 76 VRDSKSSAGTFTPVKPGPKATGSTQTPEMPEDMPEPIFVPIVGQIAAGNPILAEQHVESH 135 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + +P + Q K SM+ GD +++ S V GD + Sbjct: 136 MALPMEITGS-------GQLYLLKVVGDSMVDAGILDGDWVVVRSQDVVEQGDFVAALF- 187 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K LM N + + + + +I+ Sbjct: 188 EDEATVKEWHEDAAGK-WLMPHNRAFDP--LPAEHAKILGKIV 227 >gi|160898658|ref|YP_001564240.1| putative phage repressor [Delftia acidovorans SPH-1] gi|160364242|gb|ABX35855.1| putative phage repressor [Delftia acidovorans SPH-1] Length = 236 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 71/221 (32%), Gaps = 18/221 (8%) Query: 10 WEAIDRMAERHNL-TPSGLARKAGL------DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 E + + + + +P+ LA + L S + G+ P T ++ I Sbjct: 4 GELLQALIAKRGIPSPNALADQIALESGGEASAGSLQSAMSRLQSGKT--PRTATMKPIA 61 Query: 63 AATN-----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + +P G G+ Sbjct: 62 EFFGLDASVFQTPEAATAAAERLGLIRDEADAPAFAGYPKHQKSKIPVVGTAKMGDDGFY 121 Query: 118 VGV---PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 P + Y+ + + SM P R G +I+ + G+ +LIK Sbjct: 122 EEFSAIPGAGDGYVEHYSDDKSAYCLRVKGMSMFPAIRDGWYVIVEPNSNPSEGEYVLIK 181 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 G + K + RR SI+LMS+N T+EM +I+ I Sbjct: 182 KSDGRRMVKEFLFRRSGSIELMSVNGG-ARLTLEMHEIQDI 221 >gi|119776613|ref|YP_929353.1| LexA repressor [Shewanella amazonensis SB2B] gi|166224644|sp|A1SBC7|LEXA_SHEAM RecName: Full=LexA repressor gi|119769113|gb|ABM01684.1| SOS-response transcriptional repressor, LexA [Shewanella amazonensis SB2B] Length = 207 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 33/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I + I R + P + +A + G S N ++ + Sbjct: 1 MRPLTPRQAEILDLIKRNIAETGMPPTRAEIASRLGFK--SANAAEEH----------LK 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + + + G G G Sbjct: 49 ALAK--------------KGCIEIMPGTSRGIRLAGDELEDQPDPGLPLIGQVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + + SM + GD+L ++ Q G ++ + Sbjct: 95 AQEHVEQYYQVDPAMFRPHADFLLRVRGDSMKDIGILDGDLLAVHKMNQARNGQVVVAR- 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L + N + V+++ Sbjct: 154 VEDDVTVKRFEKQ-GNVVYLHAENEAFAPIRVDLA 187 >gi|292496094|gb|ADE29195.1| HTH protein [uncultured virus] Length = 212 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 62/218 (28%), Gaps = 20/218 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + +L A K + ++ ++ PS + + A N Sbjct: 3 EIAKELKLLRNELDLNQEQAAEKCDVSVGTWQSWEQG-----RHTPSAAKMDHVRATLNA 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + L S G + + +V I + Sbjct: 58 RNKDVSKYVQK------DGGTQTTLPLLSVSAEAGSSSNLWQTAIKSYMSVDRSVISTET 111 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKV 184 A + SM P GD +++ + G + + ++ K Sbjct: 112 G---ADPDRLAVVPVSGDSMEPTISAGDRVVVVRRGATPSIIEGCVYVWRSSRRGVILKR 168 Query: 185 LISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARIL 219 R ++ L S N Y ++ E + +++ Sbjct: 169 ADWRDSNTLVLSSDNDRYSDIELDWDNQEAWECLGQVV 206 >gi|253575013|ref|ZP_04852352.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14] gi|251845469|gb|EES73478.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 6/179 (3%) Query: 44 FGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 ++ ++R I L + + + K+ + L Sbjct: 40 GELDEKDRAFIKRFIELALFEKQHKNEEAAAREEHAVTSVQSKQDQPALEETSAEHVEET 99 Query: 104 FDSGVFPTGNKWN--TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILN 160 V T P I+ + SM GD +++ Sbjct: 100 LVPLVGKTAAGIEKTYYEFIRGYVPIPKE-VIKGTCFVLEVDGDSMNGDGIEHGDFVVIK 158 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 V GD L++ +I K + G I L+S N YP V +++ + + + Sbjct: 159 QQPVVENGDIALLRI-EDEITLKRIQR-EGGKIILVSSNPAYPKRAVPERNVQVVGKYI 215 >gi|188535218|ref|YP_001909015.1| LexA repressor [Erwinia tasmaniensis Et1/99] gi|229621213|sp|B2VKA1|LEXA_ERWT9 RecName: Full=LexA repressor gi|188030260|emb|CAO98147.1| LexA repressor [Erwinia tasmaniensis Et1/99] Length = 202 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 3/178 (1%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R I P+ I L + + + E + Sbjct: 8 QQQVYDLIRDHINQTGMPPTRAEIAAQLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G E + D + SM + Sbjct: 68 LMMEDESGLPLIGRVAAGEPLLAEQHIEGHYQVDPGLFKPGADFLLRVSGMSMKNIGIMD 127 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD+L ++ V G ++ + ++ K L + G ++L+ N + V++ Sbjct: 128 GDLLAVHKTEDVRNGQVVVARID-DEVTVKRL-KKNGNMVELLPENPDFQPIVVDLRQ 183 >gi|332187474|ref|ZP_08389211.1| peptidase S24-like family protein [Sphingomonas sp. S17] gi|332012403|gb|EGI54471.1| peptidase S24-like family protein [Sphingomonas sp. S17] Length = 205 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 20/218 (9%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S ++I A+ +AE+ ++ + L+R G + + F G R + ++ Sbjct: 1 MSGQEIRAALQALAEQAGVSLAALSRMLGRNEAYLQQ---FVHRGSPRALAEGDRRQLAE 57 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L +P L S G G V + Sbjct: 58 FFGVPETGLGAAKE-------AGPLLMPRLAVAASAGPGATVDDDVMIG-----VEAIDR 105 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVA 182 + + + + + SM P GD L+++ N L I ++ Sbjct: 106 QLARRLGLS-DGTASVIRVRGDSMAPGLMDGDHLVVDQTDTRPNARGGLYIIRIGDVLMV 164 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 K + + + S N P V + + R++W Sbjct: 165 KRVC-AGPQGLVATSDNPAAPP--VPEGPMTVVGRVVW 199 >gi|227356913|ref|ZP_03841292.1| repressor protein CI [Proteus mirabilis ATCC 29906] gi|227162983|gb|EEI47928.1| repressor protein CI [Proteus mirabilis ATCC 29906] Length = 213 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 V + E S IY+ K + SM P + G+ +++ V GD + Sbjct: 87 GVDGAVDMIEAHSGWLKIYSDDVDAYGLKVKGDSMWPRIQSGEYVVVEPNTSVKTGDEVF 146 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ G + K+ R S+N + T+ ++ I + Sbjct: 147 VRTIDGHNMIKIFNKTRDGDYQFTSINNSHKPITLSPDQVDTIHYV 192 >gi|57233690|ref|YP_182333.1| LexA repressor [Dehalococcoides ethenogenes 195] gi|57224138|gb|AAW39195.1| LexA repressor [Dehalococcoides ethenogenes 195] Length = 212 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 24/224 (10%) Query: 1 MTSFSHKK-IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M + ++ + + I R R+ PS + + TS + + Sbjct: 1 MKLTTRQRAMIDFIARFRRRYGYPPSIRDIVNGCNISSTSVVDY------------NLKI 48 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + K+ + T E + + +S F Sbjct: 49 LQKMGLIRRQAEISRGIELVGTEETEEGRISIPVIGQIAAGIPIPVPESDSFAVVTSDEN 108 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKP 175 + V E + + + SM L GD++I+ V+ G+ + Sbjct: 109 IEVTEDLTRGR------ENIYALRVKGVSMIEDLINDGDLVIMQHTQTVDNGETAAVWLK 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K + + L N P + ++E R++ Sbjct: 163 DQKEVTLKKVY-MEPGRVRLQPANRTMPPIYTQPDNVEIQGRVI 205 >gi|294789757|ref|ZP_06754988.1| prophage MuSo1, transcriptional regulator, Cro/CI family [Simonsiella muelleri ATCC 29453] gi|294482323|gb|EFG30019.1| prophage MuSo1, transcriptional regulator, Cro/CI family [Simonsiella muelleri ATCC 29453] Length = 234 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 59/215 (27%), Gaps = 24/215 (11%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI-----CQLLDLPFS 78 P+ +A+ L S + R + T + K L + + Sbjct: 21 PTQIAKDLNL---SISGVLRIIEKDTIPKADTLILIKKLKNCDWEWLMTGEGEPFPNSTD 77 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--------NTVGVPEIRSPHNGI 130 +K + + G+ N++ + Sbjct: 78 KPIFWKKPTDTKGNVIDIEEFVFIPYYDIQASAGSGLWANDEKQKNSLAFRRDWLG-TFV 136 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 Q + + SM + D ++++ D L D+ K + Sbjct: 137 SRNFEQLSVISVKGDSMSGVLEDRDTILIDHTQT-QPQDGLFALRIGSDVFVKRVQRFPN 195 Query: 191 RSIDLMSLNCCYPVDTVEMSD-----IEWIARILW 220 S+ + S N Y + +S+ I I +++W Sbjct: 196 -SLFIKSANPEYEPFEINLSEETDESIAIIGKVVW 229 >gi|260588596|ref|ZP_05854509.1| repressor LexA [Blautia hansenii DSM 20583] gi|260541071|gb|EEX21640.1| repressor LexA [Blautia hansenii DSM 20583] Length = 208 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 49/219 (22%), Gaps = 30/219 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I E + PS + L TS S E++ K Sbjct: 9 KQSEILEYMKNEILNRGFPPSVREICEAVHLKSTSSVHSH------------LETLEK-- 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 D E + G G V + Sbjct: 55 ----------NGYIRRDPTKPRAIEIVDDNFNLVRRETVNVPIIGKVSAGQPLLAVENID 104 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P Y + Q SM+ GD +I+ G +++ Sbjct: 105 GYFPIPSEYMPNNKTFMLVVQGDSMINAGIFNGDYVIVEQQQTAENGQKVVAL-VEDSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 K I L N VE + + +++ Sbjct: 164 VKTFYK-EDGHIRLQPENDTMEPIIVEQDQFFQILGKVI 201 >gi|240850547|ref|YP_002971947.1| putative phage repressor [Bartonella grahamii as4aup] gi|240267670|gb|ACS51258.1| putative phage repressor [Bartonella grahamii as4aup] Length = 205 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 36/216 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ NLT +A++ + S +K + + R + ++I ++ Sbjct: 6 NIISTLKKILTEFNLTQEDVAKRLNVTQASVSKWLK---DSDPRGSNRDAILELYKELKG 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +PL+ + +G+ P + V +P Sbjct: 63 DNHFTTF---------------VPLMGYIGAGTQIDPSFEQIP-EDGLEQVEIP------ 100 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAK 183 +A+ + + SM+P Y+ GD++I+ I+ G +I K Sbjct: 101 ---FALPDDMVAFEVKGDSMIPAYKDGDMVIVRRRQIKTIESFFGKEAVILTHDNKRYIK 157 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + IDL+S N ++ I W+ I Sbjct: 158 QISRGMNGEIDLLSWNA----LPIKNVKIVWVGEIF 189 >gi|260907225|ref|ZP_05915547.1| LexA repressor [Brevibacterium linens BL2] Length = 251 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 57/219 (26%), Gaps = 32/219 (14%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESIFKI 61 + E I+R + PS + + AGL S ++ +R G R P ++ Sbjct: 51 VLETIERAVVTNGYPPSMREIGKAAGLASLSSVAHQLSQLERLGYV--RRDPKRPRAIEV 108 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + E + T + P + + +P Sbjct: 109 VNPFEEEEAERAKYEELANNTVQ-----------VPVVGRIAAGGPILAEQEVDDVFSLP 157 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 K SM D +++ + G + G+ Sbjct: 158 TQVVGS-------GDMFLLKVVGDSMIEAAICHDDWVVVRKQHTADNGQIVAALLD-GEA 209 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L + G L+ N Y + + ++ Sbjct: 210 TVKTLKRKAGHQ-WLLPQNKDYEPIDGTYAQ--IMGLVV 245 >gi|218528309|ref|YP_002419125.1| phage repressor [Methylobacterium chloromethanicum CM4] gi|218520612|gb|ACK81197.1| putative phage repressor [Methylobacterium chloromethanicum CM4] Length = 230 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 65/228 (28%), Gaps = 30/228 (13%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I E L+ + LAR G+ K + +E +T+++ ++ Q Sbjct: 7 IREAREARGLSQAKLARAVGVSQAIIGKIELKQVE------TTKALRALVDYLELDPSQF 60 Query: 73 LDLPFSDGR--------------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 F + P + +G G G N + Sbjct: 61 PPQAFGVWAGPPAADMARAFTSEPAPPEFALDPAYWATAAGLVGDIPLYAAAEGGAGNIL 120 Query: 119 GVPEIRSPHNGIYAIQT--QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + +Q SM+P + GD L +N + + + Sbjct: 121 IERDAIGQEKRPHELQGVKNGYAILIVGESMVPEFEPGDTLYINPKLPILPNTSCVFYSN 180 Query: 177 TGD---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI--ARIL 219 + K +S +G + + + E+ EW RI+ Sbjct: 181 KNEEPTATVKRYLSDKGDAWLVRQHSP---PKDFELDRSEWATRHRIV 225 >gi|169795366|ref|YP_001713159.1| putative repressor [Acinetobacter baumannii AYE] gi|293609635|ref|ZP_06691937.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|169148293|emb|CAM86158.1| conserved hypothetical protein; putative repressor [Acinetobacter baumannii AYE] gi|292828087|gb|EFF86450.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 231 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 59/228 (25%), Gaps = 12/228 (5%) Query: 1 MTSFSHKKIWEAIDRMAERH-NLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTES 57 M + ++ E+ N + A + G ++ G G+ Sbjct: 1 MHMNISDIRRNNLLQLIEQKANGSQKDFANQVGTAAAYLSQIINGTIGNNGKPAAVGNPL 60 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 KI A + + ++ + + T Sbjct: 61 ARKIEKAYG--LPDGFMDRENSNDARLDNNVDLKEKITTEGRLVPVISWVAAGSFSPIET 118 Query: 118 VGVPEIRSPHNGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLL 172 V + K SMLP + GD + +N IQ ++ Sbjct: 119 VLRDAVVDEFLPPNTKCGKNGYGLKITGNSMLPRFEPGDRIYVNPDIQTFDLQTNDLVIV 178 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 + K LI L LN +P + + D + +++ Sbjct: 179 ACAGETEATFKKLIIEGNNRY-LEPLNPDWPEKIIRLTEDCRLVGKVV 225 >gi|290473773|ref|YP_003466647.1| repressor protein C2 [Xenorhabdus bovienii SS-2004] gi|289173080|emb|CBJ79853.1| Repressor protein C2 [Xenorhabdus bovienii SS-2004] Length = 238 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 78/244 (31%), Gaps = 42/244 (17%) Query: 2 TSFSHKKIWEA--IDR----MAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + +++ +A + R ++ ++ A + G+ ++ + + Sbjct: 3 KKLTTEQLADAKRLKRIFVLRQKQLGISSQDAFADEFGMTQSAVSHYLNGVN-----ALN 57 Query: 55 TESIFKILAATNETICQLLDLPFSD--------------GRTTEKKEKEIPLLYFPPSGS 100 E +I T + +K+ PLL + +G+ Sbjct: 58 LERAADFANKLGVSIADFSPSLDQQARKLLKAVYGDDPTFATHQHPQKQYPLLNWANAGN 117 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDI 156 + ++P + SPH + + SM ++G I Sbjct: 118 WCEEPAPLYPENDIEQWHETSIECSPH---------AFWLEVKGDSMASSNELNIQQGMI 168 Query: 157 LILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 ++++ ++ + ++ K ++ K LI+ + L LN Y + + + + Sbjct: 169 ILIDPDVKPMANNLVVAKLEGEKELTFKQLITEGYDAY-LKPLNPQYNMIPLN-EKVHIV 226 Query: 216 ARIL 219 ++ Sbjct: 227 GVVI 230 >gi|237728127|ref|ZP_04558608.1| LexA [Citrobacter sp. 30_2] gi|283836667|ref|ZP_06356408.1| repressor LexA [Citrobacter youngae ATCC 29220] gi|226910138|gb|EEH96056.1| LexA [Citrobacter sp. 30_2] gi|291067407|gb|EFE05516.1| repressor LexA [Citrobacter youngae ATCC 29220] Length = 202 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRE 183 >gi|66045756|ref|YP_235597.1| LexA repressor [Pseudomonas syringae pv. syringae B728a] gi|63256463|gb|AAY37559.1| Peptidase S24, LexA repressor [Pseudomonas syringae pv. syringae B728a] Length = 205 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 4 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 48 --KHIVALTEAGLIEVVPHQARGIRLLNTEPRPELLEIPVLGRV-----AAGVPIGPDLD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + + L+ N Y V Sbjct: 157 D-GEVTIKRLQRRADQ-VRLLPRNPAYEPIIVTPDQ 190 >gi|332637910|ref|ZP_08416773.1| LexA repressor [Weissella cibaria KACC 11862] Length = 210 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/214 (10%), Positives = 54/214 (25%), Gaps = 25/214 (11%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + P+ + GL +S ++ + + Sbjct: 11 ILRFVYEKQLEKGYPPTVREIGEGVGLSSSSTVHGHLNRLQKK-------------GLLH 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + P + + + VPE Sbjct: 58 KDPDKPRAIEVTPAGVEALGVTTRNQNMMPVLDEHEAIPASNEDSDYIVDYFPVPENLVR 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + +ML + GD +I+ + GD ++ + G K L Sbjct: 118 F------DGDLFMLRLRGNAMLNIGMLDGDFVIVRRQNDADNGDIVVARDEVGQTHIKRL 171 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L N V D+ + +++ Sbjct: 172 FR-EADAYRLQPENDNMTPIIVR--DLTILGKVV 202 >gi|254448052|ref|ZP_05061516.1| LexA repressor [gamma proteobacterium HTCC5015] gi|198262478|gb|EDY86759.1| LexA repressor [gamma proteobacterium HTCC5015] Length = 196 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 3/141 (2%) Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 G K + G G G V + + + Sbjct: 49 EEQGYIERSKRHRGIRVLDEQVSPGTLPLMGRIAAGQPIEAV--NDQQQLDLNSLFAGSN 106 Query: 137 DTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 + + SM GD +++ SA GD ++ D K + R G + L Sbjct: 107 RYALQVKGDSMVEAGICDGDWVVIESAQTARNGDIVVALVDDEDATLKTIDYRAGGQVAL 166 Query: 196 MSLNCCYPVDTVEMSDIEWIA 216 + N ++ Sbjct: 167 IPSNSAMEAMVYPEERVQIQG 187 >gi|145301042|ref|YP_001143883.1| LexA repressor [Aeromonas salmonicida subsp. salmonicida A449] gi|166224550|sp|A4STB3|LEXA_AERS4 RecName: Full=LexA repressor gi|142853814|gb|ABO92135.1| LexA repressor [Aeromonas salmonicida subsp. salmonicida A449] Length = 207 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 62/215 (28%), Gaps = 33/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ E I + P + +A+K G S N ++ + Sbjct: 1 MKPLTPRQAEVLELIKVNMSETGMPPTRAEIAQKLGFK--SANAAEEH----------LK 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + + + + G G G Sbjct: 49 ALAK--------------KGVIEIMPGTSRGIRLLIEEEAVLEETGLPLIGKVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + Q SM + GD+L ++ +V G ++ + Sbjct: 95 AQEHIESHYQVDPALFHPRADFLLRVQGMSMKNIGILDGDLLAVHKTQEVRNGQVVVARL 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L+ N V++S Sbjct: 155 D-EDVTVKRFQRK-GSQVWLLPENEELEPIAVDLS 187 >gi|307246024|ref|ZP_07528106.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306852959|gb|EFM85182.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 210 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 34/218 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I++ + E + P+ +AR+ G + + E K LA Sbjct: 10 QQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 53 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + G G G + E Sbjct: 54 RKGYIEMLSGTSRGIRILVDNEE---------TAANDDGLPLIGKVAAGTPIIAIEHVES 104 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG D K SM + GD+L ++ G ++ + ++ Sbjct: 105 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVD-DEVTV 163 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N V+ +IE IA Sbjct: 164 KRLEKK-GDLIYLHPENDELQPIIVDPRIEYIEIEGIA 200 >gi|221195372|ref|ZP_03568427.1| LexA repressor [Atopobium rimae ATCC 49626] gi|221184559|gb|EEE16951.1| LexA repressor [Atopobium rimae ATCC 49626] Length = 225 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 55/209 (26%), Gaps = 16/209 (7%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + A AGL PT+ G+ G E + KI + + +D Sbjct: 17 SVKKFAECAGLPPTTVYNVLTRGVSGS----GFEIVQKIYNTLG--LHYTVRGFETDYDY 70 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 + + K L G G G V I Sbjct: 71 EDLRAKRDEYLNKRNGGFVEVPLLGRIAAGVPIKMDLVETTVLCPAEIRRRHPNAFFLTV 130 Query: 143 QDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN- 199 SM + G +++ + V G + D K + ++L+ + Sbjct: 131 DGESMNNVLPNGCYALVDPEKKSPVVDGTAYAVCVNGYDATIKRIKQLENG-VELIPDSK 189 Query: 200 -CCYPVDTVEM-----SDIEWIARILWAS 222 + + I I ++W S Sbjct: 190 DPTFHAQVYDKTVEGTESITIIGEVVWYS 218 >gi|227534136|ref|ZP_03964185.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188243|gb|EEI68310.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 227 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 70/221 (31%), Gaps = 17/221 (7%) Query: 14 DRMAERHN-LTPSGLARKA-G-LDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETI 69 D + + ++ ++++ G + + ++++ G+ PS E++ + N + Sbjct: 6 DYLRQLRGTMSLREASQRSHGRISHAAIAQAEKGINSHGKPFTPSAETLKEFAKLYNVST 65 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-----PTGNKWNTVGVPEIR 124 +L+ + ++++ IP+ + + + VP+ Sbjct: 66 TKLMKMAGYIEKSSDLPSNAIPVSSEEADQPVMVYGEIQAGVAKWAEQDIIGQINVPKSF 125 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + G K SM G + + ++ GD + + + K Sbjct: 126 AKRYGA----KNLFALKVDGESMNREIPNGYTAVFSKDLEPESGDIVAVMIDSESATIKR 181 Query: 185 LISRR-GRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221 + S + + D + I + L+A Sbjct: 182 FRETSLAVMFEPSSWDPSFKPYVFPKDGIQDFKIIGKFLYA 222 >gi|193070021|ref|ZP_03050968.1| repressor protein C2 [Escherichia coli E110019] gi|260867149|ref|YP_003233551.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|192956618|gb|EDV87074.1| repressor protein C2 [Escherichia coli E110019] gi|257763505|dbj|BAI35000.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|323175391|gb|EFZ60986.1| helix-turn-helix family protein [Escherichia coli 1180] Length = 224 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 65/211 (30%), Gaps = 15/211 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I + LT +A+ G+ S K + + P E+++ + + Sbjct: 3 NTISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSK-----PDGENLYLLSKLLS 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ +L + + + + P + + +P I++ Sbjct: 58 KSPEWILYGKDGHDKADDLRLNQYPYISDNIARLPVLTWEQAGYWDMSCPVTEIPGIKNW 117 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRL-LIKPRT 177 + + + +M LP G +++ G + + T Sbjct: 118 VDVMTKTAENSFLLHVEGDAMTNSNGLPTIPDGSTVLITPCSSNIRELVGKIILIQLEGT 177 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ K + I L+SLN Y + Sbjct: 178 PNVTLKKVAIDGPN-IYLLSLNPLYKPIELN 207 >gi|332853417|ref|ZP_08434736.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332870600|ref|ZP_08439342.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] gi|332728623|gb|EGJ59991.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332732160|gb|EGJ63429.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] Length = 263 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 71/228 (31%), Gaps = 19/228 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M +K + ++ + + + T + L + G+ + + R ++ Sbjct: 39 MEDAKYKDFADRLNALMKAKDSPIKTINELKKAIGVSYEMARRYTLGTA--KPRIEKLQT 96 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + I + ++ ++K E + + G F + Sbjct: 97 LADIFGV-EISYLDHGTKLDNNIDLSDKVGFEGRRVPVISWVAAGSFTPIETVLKDTEIE 155 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIK 174 +P R K SM P + GD + +N IQ D +++ Sbjct: 156 EYLPPNRR-------CGKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVA 208 Query: 175 PRTG-DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219 + K LI + L LN +P +++ D + +++ Sbjct: 209 CAGDSEATFKKLIIEGEGTSKFLEPLNSDWPDKIIKLSEDCRLVGKVV 256 >gi|124005663|ref|ZP_01690502.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] gi|123988731|gb|EAY28337.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] Length = 255 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 15/223 (6%) Query: 3 SFSHKKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I + + T S +A+ G+ +++ + P + KI Sbjct: 1 MKKRRLIAHNLKYLRSEVKKTTQSRVAKHLGISRSAWVDYELGKA-----LPKANVLIKI 55 Query: 62 LAATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTV 118 +I L + + IP+ F G + Sbjct: 56 AEYFGVSIDDLLKVNLKKKTIPSVNNIRLIPVETTGKVTQNIDFIPVKAKAGYSQGYGEE 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKP 175 + + + SM P + G I+I + + + R ++ Sbjct: 116 SYIKELFRFTLPKLPDGNYRAFEIEGDSM-PPLQDGFIVIGKYIENFHNIKNNHRYIVLL 174 Query: 176 RTGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + +V K +I+ + + + L+S N Y +V + ++ I Sbjct: 175 KEEGVVFKKVINEVSKNQQLLLVSDNTNYLPYSVNIDEVLEIW 217 >gi|149003996|ref|ZP_01828803.1| phage transcriptional repressor [Streptococcus pneumoniae SP14-BS69] gi|147757978|gb|EDK64985.1| phage transcriptional repressor [Streptococcus pneumoniae SP14-BS69] Length = 252 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 69/253 (27%), Gaps = 48/253 (18%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI----- 61 + + I + LT LA+K + PT+ + + + + E + I Sbjct: 2 DSLAQNIKYYRKLSGLTQKELAKKLSVAPTAISAWEVGRNQ--PLMNNIEQMSAIFGIKK 59 Query: 62 ---LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT------- 111 L + P K ++ +L + + Sbjct: 60 SLLLGEDFSSHVDKATSPIQTIYDELKPPRQAKVLNYAKRQLDEQKNEEETKINEVSEKV 119 Query: 112 --------------------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 G ++ I D K SM P Y Sbjct: 120 LDLYQVEVVSETAAASGFNYGFGYDDTDREIIEVDEQP----PHHDIATKVSGDSMQPDY 175 Query: 152 RKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-- 208 + GDIL +++ + GD +I K + + L+SLN Y ++ Sbjct: 176 QDGDILYLVDKGLTTYNGDLAVIAY-GDRSYFKKIY-TENGRLRLVSLNDKYEDIILDFP 233 Query: 209 -MSDIEW-IARIL 219 D I ++ Sbjct: 234 PAEDTHIKIYAVV 246 >gi|187476916|ref|YP_784940.1| phage repressor protein [Bordetella avium 197N] gi|115421502|emb|CAJ48011.1| Putative phage repressor protein [Bordetella avium 197N] Length = 317 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 81/297 (27%), Gaps = 76/297 (25%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSK---RFGIEGRNRWPS-- 54 M S I A + R+ ++H + LA+ +G+ T+ + R + PS Sbjct: 6 MKKRSINDILAANLSRLMDKHGHKQASLAKLSGIGQTTISLYLNPDRRQPSKSGKLPSAK 65 Query: 55 ---TESIFKILAATNETICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFD-- 105 E + ++L + + D + + ++ P+ + Sbjct: 66 LSEVEVLAEVLGVSPWELLTPHDHAQPNSAAADSHAQAPKRGTPIDMDAVADEFPMRIPG 125 Query: 106 -------------------------------------------------SGVFPTGNKWN 116 G Sbjct: 126 LPPGPSQIDEPAPAYVAPRLSLEQAVAVNVAPGEHHAANDKFEKVPELADVRLAAGEGIE 185 Query: 117 TVGVP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNC- 167 RS + A + + SM P+ R G L++ + ++ ++ Sbjct: 186 NHTEEMTGFVQFRRSFLRAVGADGGRGRVVYAKGDSMEPIIRDGAALLVAIDQSLTLHDV 245 Query: 168 -GDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSD-IEWIARILWA 221 + G ++ K + R S N +P +E + + + R++WA Sbjct: 246 AAGGVYAINYDGKMLVKTVAKDRLTGRWVARSFNAQHPDIPLEGNGLVRVLGRVVWA 302 >gi|94264776|ref|ZP_01288554.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] gi|94264785|ref|ZP_01288563.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] gi|93454765|gb|EAT05020.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] gi|93454774|gb|EAT05029.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] Length = 145 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V + + A + SM+ DIL+++ +++ G R++ Sbjct: 36 AEDYVE--GQLDLNQLMVAHPAATFFVRVVGDSMIGAGIHHDDILVVDRSLEPVSG-RVV 92 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G++ K L + L++ N YP + + ++ Sbjct: 93 IAVINGELTVKRLFRH-NGTARLLAENPNYPPIELTEEAACEVWGVV 138 >gi|86141830|ref|ZP_01060354.1| hypothetical protein MED217_01825 [Leeuwenhoekiella blandensis MED217] gi|85831393|gb|EAQ49849.1| hypothetical protein MED217_01825 [Leeuwenhoekiella blandensis MED217] Length = 256 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 69/218 (31%), Gaps = 18/218 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 ++ E NLT S A G+ ++ +R + S + + ++L N Sbjct: 11 RRFKQIREEQNLTQSEFAEALGIKNST-ADIERGRTK-----LSGQIVTELLRLYNVNPL 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L K + ++ + + + Sbjct: 65 WLFGYSNQKLLHAGKGDVSPKVVTVDIADNENLVMVNQKAA-AGYPHNVQDVEWYQQLPA 123 Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIV 181 + + + + SMLP + D ++ + S + ++ + +V Sbjct: 124 FDLPLPQYRNATYRGFQIEGDSMLPNFMPDDWVLGKAIASMDEAYNN-KVYVVVLPDAVV 182 Query: 182 AKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L + L+SLN Y V++SDI+ + ++ Sbjct: 183 VKKLQKLPDPSKVLLISLNQEYLPFEVQVSDIQELWQV 220 >gi|124008127|ref|ZP_01692825.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] gi|123986375|gb|EAY26188.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] Length = 269 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 69/228 (30%), Gaps = 26/228 (11%) Query: 11 EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET- 68 + + + ER+ T LA G+ ++ + + E P + +I N T Sbjct: 5 KNLKHLRERNGKQTQENLANALGITRSAISSYEDGRAE-----PKLVVMNRIAQYFNITL 59 Query: 69 ------------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--K 114 L + + + + + + G Sbjct: 60 DQLLNVELATLGDVDLQQQKEVKKYASAENLRILTITTDRENNENIELVPEKAAAGYTKG 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDT-RHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRL 171 + + + + + + + SMLPL + ++ + + +V G Sbjct: 120 YADAEYLKDLPKYQLPFLPEGRTYRAFEIAGESMLPLLPESIVIGEYVANWNEVQEGQTC 179 Query: 172 LIKPRTGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++ + +V K + ++ + L S N Y V ++ I + Sbjct: 180 VVVAKNDGVVLKKVYNKITERGTFLLKSSNIAYQPYEVSADEVVEIWK 227 >gi|16762918|ref|NP_458535.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767487|ref|NP_463102.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29144405|ref|NP_807747.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56416037|ref|YP_153112.1| LexA repressor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182686|ref|YP_219103.1| LexA repressor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161505300|ref|YP_001572412.1| LexA repressor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161617365|ref|YP_001591330.1| LexA repressor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552539|ref|ZP_02346292.1| LexA repressor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991426|ref|ZP_02572525.1| LexA repressor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231233|ref|ZP_02656291.1| LexA repressor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239348|ref|ZP_02664406.1| LexA repressor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243634|ref|ZP_02668566.1| LexA repressor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263442|ref|ZP_02685415.1| LexA repressor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466919|ref|ZP_02700767.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446691|ref|YP_002043488.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449839|ref|YP_002048228.1| LexA repressor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472176|ref|ZP_03078160.1| LexA repressor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738283|ref|YP_002117116.1| LexA repressor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247736|ref|YP_002149151.1| LexA repressor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263236|ref|ZP_03163310.1| LexA repressor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364964|ref|YP_002144601.1| LexA repressor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244996|ref|YP_002218132.1| LexA repressor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388085|ref|ZP_03214697.1| LexA repressor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927146|ref|ZP_03218348.1| LexA repressor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205355009|ref|YP_002228810.1| LexA repressor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859391|ref|YP_002246042.1| LexA repressor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052230|ref|ZP_03345108.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213423564|ref|ZP_03356544.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424504|ref|ZP_03357301.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213619392|ref|ZP_03373218.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647510|ref|ZP_03377563.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859894|ref|ZP_03385598.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224586003|ref|YP_002639802.1| LexA repressor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913014|ref|ZP_04656851.1| LexA repressor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824645|ref|ZP_06544172.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61227645|sp|P0A273|LEXA_SALTY RecName: Full=LexA repressor gi|61227646|sp|P0A274|LEXA_SALTI RecName: Full=LexA repressor gi|71648702|sp|Q57GZ0|LEXA_SALCH RecName: Full=LexA repressor gi|71648703|sp|Q5PL14|LEXA_SALPA RecName: Full=LexA repressor gi|189046544|sp|A9MGP6|LEXA_SALAR RecName: Full=LexA repressor gi|189046545|sp|A9N1L6|LEXA_SALPB RecName: Full=LexA repressor gi|226694239|sp|B5F1Q6|LEXA_SALA4 RecName: Full=LexA repressor gi|226694240|sp|B5FQR1|LEXA_SALDC RecName: Full=LexA repressor gi|226694241|sp|B5QZ62|LEXA_SALEP RecName: Full=LexA repressor gi|226694242|sp|B5R7T6|LEXA_SALG2 RecName: Full=LexA repressor gi|229621745|sp|B4TDM0|LEXA_SALHS RecName: Full=LexA repressor gi|229621746|sp|B4T1T2|LEXA_SALNS RecName: Full=LexA repressor gi|229621747|sp|B5BJW0|LEXA_SALPK RecName: Full=LexA repressor gi|229621748|sp|B4TQQ5|LEXA_SALSV RecName: Full=LexA repressor gi|254809105|sp|C0Q514|LEXA_SALPC RecName: Full=LexA repressor gi|25300634|pir||AD1015 repressor LexA (EC 3.4.21.88) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|47766|emb|CAA44731.1| lexA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16422795|gb|AAL23061.1| SOS response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16505225|emb|CAD09221.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi] gi|29140043|gb|AAO71607.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130294|gb|AAV79800.1| LexA repressor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130319|gb|AAX68022.1| SOS response regulator, transcriptional repressor (LexA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160866647|gb|ABX23270.1| hypothetical protein SARI_03441 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366729|gb|ABX70497.1| hypothetical protein SPAB_05220 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405354|gb|ACF65576.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408143|gb|ACF68362.1| LexA repressor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458540|gb|EDX47379.1| LexA repressor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713785|gb|ACF93006.1| LexA repressor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630596|gb|EDX49208.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096441|emb|CAR62047.1| LexA repressor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211439|gb|ACH48836.1| LexA repressor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241491|gb|EDY24111.1| LexA repressor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287939|gb|EDY27327.1| LexA repressor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939512|gb|ACH76845.1| LexA repressor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605183|gb|EDZ03728.1| LexA repressor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323811|gb|EDZ09006.1| LexA repressor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274790|emb|CAR39849.1| LexA repressor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322831|gb|EDZ10670.1| LexA repressor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330205|gb|EDZ16969.1| LexA repressor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334379|gb|EDZ21143.1| LexA repressor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337302|gb|EDZ24066.1| LexA repressor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347902|gb|EDZ34533.1| LexA repressor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711194|emb|CAR35570.1| LexA repressor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470531|gb|ACN48361.1| LexA repressor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249335|emb|CBG27198.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996548|gb|ACY91433.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160730|emb|CBW20261.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915342|dbj|BAJ39316.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223105|gb|EFX48175.1| SOS-response repressor and protease LexA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615393|gb|EFY12313.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618454|gb|EFY15343.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622135|gb|EFY18985.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627205|gb|EFY23997.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631166|gb|EFY27930.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637616|gb|EFY34317.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642582|gb|EFY39179.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643598|gb|EFY40153.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648334|gb|EFY44793.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654643|gb|EFY50963.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659603|gb|EFY55846.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662189|gb|EFY58405.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666066|gb|EFY62244.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672486|gb|EFY68597.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675915|gb|EFY71986.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680399|gb|EFY76437.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684706|gb|EFY80710.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717185|gb|EFZ08756.1| LexA repressor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132576|gb|ADX20006.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195970|gb|EFZ81136.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197100|gb|EFZ82241.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201782|gb|EFZ86846.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206296|gb|EFZ91258.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213308|gb|EFZ98110.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215677|gb|EGA00421.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222100|gb|EGA06486.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226512|gb|EGA10718.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229137|gb|EGA13266.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236254|gb|EGA20330.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237627|gb|EGA21688.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241708|gb|EGA25737.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248145|gb|EGA32082.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254524|gb|EGA38335.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258416|gb|EGA42093.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259695|gb|EGA43329.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265968|gb|EGA49464.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270410|gb|EGA53858.1| LexA repressor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625929|gb|EGE32274.1| LexA repressor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630161|gb|EGE36504.1| LexA repressor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991053|gb|AEF10036.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 202 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFTPIVVDLRE 183 >gi|330831583|ref|YP_004394535.1| LexA repressor [Aeromonas veronii B565] gi|328806719|gb|AEB51918.1| LexA repressor [Aeromonas veronii B565] Length = 207 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 33/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ E I + P + +A+K G S N ++ + Sbjct: 1 MKPLTPRQAEVLELIKVNMSETGMPPTRAEIAQKLGFK--SANAAEEH----------LK 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + + + L G G G Sbjct: 49 ALAK--------------KGVIEIMPGTSRGIRLLLEEEEVLEESGLPLIGKVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + Q SM + GD+L ++ +V G ++ + Sbjct: 95 AQEHIESHYQVDPALFHPRADFLLRVQGMSMKNIGILDGDLLAVHKTQEVRNGQVVVARL 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L+ N V++S Sbjct: 155 D-EDVTVKRFQRK-GSQVWLLPENEELSPIEVDLS 187 >gi|239834287|ref|ZP_04682615.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] gi|239822350|gb|EEQ93919.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] Length = 264 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 67/251 (26%), Gaps = 39/251 (15%) Query: 2 TSFSHKKIWEA-------------------IDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 + +H I+ + +++ + LA G D ++ + + Sbjct: 14 SMSTHDDIFARYNFTTICEKPIMDKDFAFRLKNARVARDMSQAQLADLVGRDKSAISLLE 73 Query: 43 RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 R S + + ++ A N L E+ E E P F P G Sbjct: 74 SG-----KRGASVDFVARLAKALNVREDWLAFEKGDMIGQEERAELERPADIFTPKLIPG 128 Query: 103 FF-------DSGVFPTGNKWNTVGV---PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR 152 V + P + SM+P YR Sbjct: 129 NELVGDQRDLPVYAAAKGGDGHVIITFDPISYMKMPAVLQGVKGGYGLLLSGESMVPAYR 188 Query: 153 KGDILILNSAIQVNCGDRLLIKP----RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 G+ ++N + + +++ + + K L+ R L N Sbjct: 189 PGETALVNPNLPPMRDEDVILYHTSEMDENEAIIKRLVGYNDREWMLEQYNPHKEFKEFR 248 Query: 209 MSDIEWIARIL 219 D R++ Sbjct: 249 A-DWPVCHRVV 258 >gi|157373341|ref|YP_001471941.1| LexA repressor [Shewanella sediminis HAW-EB3] gi|189046549|sp|A8FPP0|LEXA_SHESH RecName: Full=LexA repressor gi|157315715|gb|ABV34813.1| Repressor lexA [Shewanella sediminis HAW-EB3] Length = 206 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 63/214 (29%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A++ G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIADTGMPPTRAEIAKRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA + E+E+ L G Sbjct: 45 EHLKALAKKGCIEIIPGTSRGIRLTQANESEEELGLPLIGQ-----------VAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + +GD+L ++ A Q G ++ + Sbjct: 94 AQEHVEQHYQIDPAMFRPSADFLLRVRGDSMKNIGILEGDLLAVHKAEQARNGQVVVAR- 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K + G + L + N Y V++ Sbjct: 153 VEDDVTVKRFEKK-GSIVYLHAENEDYSPIVVDL 185 >gi|94263325|ref|ZP_01287140.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] gi|93456280|gb|EAT06410.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1] Length = 145 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V + + A + SM+ DIL+++ +++ G R++ Sbjct: 36 AEDYVE--GQLDLNQLMVAHPAATFFVRVAGDSMIGAGIHHDDILVVDRSLEPTSG-RVV 92 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G++ K L + L++ N YP + + ++ Sbjct: 93 IAVINGELTVKRLFRH-NGTARLLAENPNYPPIELTEEAACEVWGVV 138 >gi|260170722|ref|ZP_05757134.1| putative phage repressor [Bacteroides sp. D2] gi|315919062|ref|ZP_07915302.1| predicted protein [Bacteroides sp. D2] gi|313692937|gb|EFS29772.1| predicted protein [Bacteroides sp. D2] Length = 223 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 64/216 (29%), Gaps = 21/216 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR------WPSTESIFKI 61 +I + I E + + G+ F+ K G + R + E + Sbjct: 2 EIVDRIKLFREYLGIGQTAFEVNIGVARGYFSNVKTLGSDRILRIHTKYPELNIEWLVTG 61 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + + +++ L+Y + G F ++ P Sbjct: 62 NGEMIKNAEREQKTIEISESAISETKRKGALIYDIDATCGLSGRDIEFTDEKVIGSIDAP 121 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNCGDRLLIKPRTGD 179 EI S I+A SMLPL GD +++ + ++ + Sbjct: 122 EINSDSKIIFA----------TGDSMLPLIASGDRVVIRKIESWDYFNYGQVYLIITNEY 171 Query: 180 IVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDI 212 + K + I L S N Y + +I Sbjct: 172 RLIKRVRRHPKDADNLILLRSENPDYDDIDLPKREI 207 >gi|210613656|ref|ZP_03289815.1| hypothetical protein CLONEX_02022 [Clostridium nexile DSM 1787] gi|210151086|gb|EEA82094.1| hypothetical protein CLONEX_02022 [Clostridium nexile DSM 1787] Length = 200 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 56/213 (26%), Gaps = 49/213 (23%) Query: 7 KKIWEAIDRMAERHNL----TP--SGLARKAGLDPTSFNKSK-----RFGIEGRNRWPST 55 +++ + I AE+ L +P S +A G+ ++ K R + RN T Sbjct: 6 EELMKQIMDYAEQFQLLNHRSPYTSEIADALGIVKSTVYKYLVAMNDRGMLSYRNGEIVT 65 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E KI T Sbjct: 66 ERTNKISLLTKP----------------------------AAVLGSVSCGMPQLEEEYIE 97 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 V +P + + + SM+ GD++++ + GD ++ Sbjct: 98 EYVSLPVSLFG-------EGEFFILRASGDSMIGAGINSGDMIVIRKQNTASDGDIVVAL 150 Query: 175 PRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDT 206 + K R + L N YP Sbjct: 151 VD-NESTLKRFFLDTERRCVRLHPENPKYPDIY 182 >gi|317151917|ref|YP_004119965.1| CI repressor [Desulfovibrio aespoeensis Aspo-2] gi|316942168|gb|ADU61219.1| CI repressor [Desulfovibrio aespoeensis Aspo-2] Length = 240 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 9/220 (4%) Query: 11 EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 EA++R+ + T LA + +S + +KR + + Sbjct: 18 EALERIKKATGARTQVQLAEVLDVRQSSISDAKRRCSIPAEWFLKLYRSHGLDPDWLSEG 77 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSP 126 + + + + + + S G G P Sbjct: 78 VEPVYINAAKAKIPADTLLRETPAPYGRMNSRGRVVPVSTMAGADKEKASWEPNPIEELS 137 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVL 185 + K +M P+ + + ++ + GD + + + + Sbjct: 138 VPESFCRPK-LQVVKVDSAAMEPVIGRAAFVGIDRDQREHPDGDLCAVHFPHQGLTIRRV 196 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + G + L + N Y T+ S++ + R++W Q Sbjct: 197 FMQ-GDTFLLKADNEKYTDLTIPASEMGERTVGRVIWVLQ 235 >gi|91794862|ref|YP_564513.1| LexA repressor [Shewanella denitrificans OS217] gi|123060542|sp|Q12ID6|LEXA_SHEDO RecName: Full=LexA repressor gi|91716864|gb|ABE56790.1| SOS-response transcriptional repressor, LexA [Shewanella denitrificans OS217] Length = 205 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 57/214 (26%), Gaps = 35/214 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A + G + E Sbjct: 1 MRPLTPRQTEILELIKRNIADTGMPPTRAEIATRLGFKSA---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + I L G G G Sbjct: 46 HLKALAKK-------------GCIEIMPGTSRGIRLTQEDAEVELGLPLIGQVAAGEPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + + + SM + +GD+L ++ + G ++ + Sbjct: 93 AQEHVEQYFQVDPHMFKPAANFLLRVRGDSMKNIGILEGDLLAVHKMQEAKNGQVVVAR- 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K + G I L + N Y V++ Sbjct: 152 VEDDVTVKRFEKK-GNVIYLHAENEDYAPIKVDL 184 >gi|237752435|ref|ZP_04582915.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375924|gb|EEO26015.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 209 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 69/223 (30%), Gaps = 24/223 (10%) Query: 1 MTSFSHKKIWEAI-DRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M ++I E + D +A + +A+ + P +FN K Sbjct: 1 MDM---EEIIEKLKDILASEGQKSVKTIDVAKALNIHPDTFNSMKFRNSIPYK------Q 51 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I L N +I + + I LY + GG G Sbjct: 52 ILNFLEKRNISINYFFFGSSPKESLQSEDKYRILKLYKTNASLGG---------GGINEF 102 Query: 118 VGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 V EI + + + + SM P+ + G I +L+ I+ + Sbjct: 103 VECQEIIIDNALLHFFQSQNCELITSFGESMEPIIKDGSICVLDK-IKPFKDKGIYGVNT 161 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + I L SLN Y E + I R++ Sbjct: 162 REGLFVKQVFKQENGVI-LHSLNPIYQDLFFENGEYLIIGRVI 203 >gi|313105661|ref|ZP_07791925.1| hypothetical protein PA39016_000100021 [Pseudomonas aeruginosa 39016] gi|310878427|gb|EFQ37021.1| hypothetical protein PA39016_000100021 [Pseudomonas aeruginosa 39016] Length = 261 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 8/111 (7%) Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + P +G+ SM PL G ++ ++ ++ + Sbjct: 146 IRFPRSVLHESGV--NPKCAVCVNVTGNSMEPLIADGAVIGIDMSVNAITDGEIYALKHD 203 Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS-----DIEWIARILWAS 222 + K + G I L S N YP + DI I + W S Sbjct: 204 DLLRVKFVYRLPGGGIRLRSYNRDEYPDEEYTRDQMRAGDISVIGWVFWWS 254 >gi|229119313|ref|ZP_04248616.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] gi|228664179|gb|EEL19717.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] Length = 228 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 18/221 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +T L + G + + + E +I + L + Sbjct: 9 VGQQIKNFRKLKKMTQKELGLRIGKKHNTISSYENGTNE--PEQDVLFAIAQALDISIND 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + T +E Y P S S G T T+ +P+ Sbjct: 67 LFPPTNEVYKTNTPTISLVRESSYTYVPTSISAGLPLEIDGMTEMDLETIHIPDAL---M 123 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGDIVAKVLI 186 G +A + + SM + ++ + ++ D ++ D K Sbjct: 124 GKWAGREDIFMTRVNGDSMNKVIPHTSLIAVKEVALEELYDNDIVV-FSNGCDYSVKRFF 182 Query: 187 S-RRGRSIDLMSLNCCYPVDTV-------EMSDIEWIARIL 219 + + + + Y + ++I+ +++ Sbjct: 183 NDKENKRLIFRPD--SYDNRFFDYTVPYEDAANIKIHGKVV 221 >gi|292489790|ref|YP_003532680.1| regulator for SOS(LexA) regulon [Erwinia amylovora CFBP1430] gi|292897996|ref|YP_003537365.1| LexA repressor [Erwinia amylovora ATCC 49946] gi|291197844|emb|CBJ44939.1| LexA repressor [Erwinia amylovora ATCC 49946] gi|291555227|emb|CBA23483.1| regulator for SOS(LexA) regulon [Erwinia amylovora CFBP1430] gi|312173975|emb|CBX82229.1| regulator for SOS(LexA) regulon [Erwinia amylovora ATCC BAA-2158] Length = 202 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 3/178 (1%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R I P+ I L + + + E + Sbjct: 8 QQQVYDLIRDHINQTGMPPTRAEIAAQLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 GG G G E + D + SM + Sbjct: 68 LMMEEEGGLPLIGRVAAGEPLLAEQHIEGHYQVDPALFRPGADFLLRVSGMSMKNIGIMD 127 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD+L ++ V G ++ + ++ K L + G ++L+ N + V++ Sbjct: 128 GDLLAVHKTEDVRNGQVVVARID-DEVTVKRL-KKNGNMVELLPENPEFQPIVVDLRQ 183 >gi|189424297|ref|YP_001951474.1| transcriptional repressor, LexA family [Geobacter lovleyi SZ] gi|189420556|gb|ACD94954.1| transcriptional repressor, LexA family [Geobacter lovleyi SZ] Length = 209 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 60/219 (27%), Gaps = 37/219 (16%) Query: 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K++ + I + + + +AR + + K G R + ES+ + Sbjct: 16 QKQVLQFITSYTDDNGFPPSQREIARHLNVS-GTLPVMKHLGALERKGYIKRESVNR--- 71 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L P + S GV G+ + + Sbjct: 72 --------------------------GIALVRPANRSVSLPVVGVVRAGHLAPAIEDIQG 105 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM+ GD+ ++ D ++ G++ Sbjct: 106 HFAVDPMAVKGDDCFFLRVSGDSMINAGILDGDLAMVRPQQTAGNKDTVVAMID-GEVTL 164 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219 K R I L N + D + + +++ Sbjct: 165 KWFYRERD-HIRLQPANPNMEPIIIRPEDGELSIVGKVI 202 >gi|154249478|ref|YP_001410303.1| SOS-response transcriptional repressor, LexA [Fervidobacterium nodosum Rt17-B1] gi|154153414|gb|ABS60646.1| SOS-response transcriptional repressor, LexA [Fervidobacterium nodosum Rt17-B1] Length = 198 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 51/222 (22%), Gaps = 34/222 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + ++ I++ I PS R P + Sbjct: 1 MRELTERQKLIYDFIKDYMIMKGYAPS----------------IRDISRHFKMTPRGAQL 44 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I + + P + + Sbjct: 45 HLIA-------LEKKGYIKRGKGPRTISLLDRKESIVVPVKGKIAAGQAIEMFEQIDEEI 97 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 VP G Y K Q SM+ GD +++ + Sbjct: 98 EVPLAMLKGYGEY------FALKVQGDSMINAHILDGDYVVIKRQYSAENNSIV-AAVVE 150 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I K L+ + I+L+ N Y E + I +++ Sbjct: 151 DKITLKRLV-LKDDHIELIPENDAYQPIVCEPKKVRIIGKMV 191 >gi|94495894|ref|ZP_01302473.1| putative phage repressor [Sphingomonas sp. SKA58] gi|94424586|gb|EAT09608.1| putative phage repressor [Sphingomonas sp. SKA58] Length = 222 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 16/225 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +DR+ + L+R G + + + G R + + Sbjct: 1 MDQSQDARATLDRLIADRGDNYADLSRLIGRNAAYIQQFIKR---GTPRKLDEDDRRVLA 57 Query: 63 AATNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + + +P L S GG D G + Sbjct: 58 RYFGVSEDMLGGVASAAPAPVRGRGLPAVVSVPRLALGASAGGGTLDDDERTAG----VM 113 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRT 177 H G+ + + + SM P GD ++++ + D + + Sbjct: 114 AFDARWLRHLGV--RPQRVSIIRVDGESMAPTLSDGDDIMVDHDDDADRLRDGVYVLRLD 171 Query: 178 GDIVAKVLISRR-GRSIDLMSLNCCYPVDT-VEMSDIEWIARILW 220 G ++ K + ++S N YP T ++ + ++ + R++W Sbjct: 172 GVLMVKRIAMGPLRGRFSVLSDNAHYPDWTDIDPTLVDIVGRVVW 216 >gi|330971222|gb|EGH71288.1| LexA repressor [Pseudomonas syringae pv. aceris str. M302273PT] Length = 202 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 65/215 (30%), Gaps = 34/215 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 45 --KHIVALTEAGLIEVVPHQARGIRLLNTEPRPELLEIPVLGRV-----AAGVPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 98 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNSQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G++ K L R + + L+ N Y V Sbjct: 154 D-GEVTIKRLQRRADQ-VRLLPRNPAYEPIIVTPD 186 >gi|331008501|gb|EGH88557.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 202 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFSSRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 45 --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLELPVLGRV-----AAGAPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 98 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + + L+ N Y V Sbjct: 154 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 187 >gi|322435099|ref|YP_004217311.1| transcriptional repressor, LexA family [Acidobacterium sp. MP5ACTX9] gi|321162826|gb|ADW68531.1| transcriptional repressor, LexA family [Acidobacterium sp. MP5ACTX9] Length = 201 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 57/220 (25%), Gaps = 32/220 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + K++ + + ++ +PS +A GL+ S ++ K Sbjct: 4 TRRQKEVIDFLSGFTTKNGYSPSYEEIASGLGLN-------------------SLATVHK 44 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + ++ G G G + Sbjct: 45 HITNLQ-------NKGLLQRAHNRSRSIDVLPARTSKKGFERLPLLGRIAAGQPVEAIET 97 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E S G + + + SM GD +++ G+ ++ D Sbjct: 98 AESIS--LGDIIGNREVFALEVRGDSMRDEHIVSGDYVLVERTRTAREGEIVVALIDGAD 155 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N +++ ++L Sbjct: 156 ATLKRFYREGA-MIRLQPSNKEMAPIYAPAANVSIQGKVL 194 >gi|297518180|ref|ZP_06936566.1| LexA repressor [Escherichia coli OP50] Length = 192 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|291282703|ref|YP_003499521.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Escherichia coli O55:H7 str. CB9615] gi|290762576|gb|ADD56537.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Escherichia coli O55:H7 str. CB9615] Length = 238 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 67/226 (29%), Gaps = 19/226 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I + LT +A+ G+ S K + + P E++ + + Sbjct: 17 NTISERIRNRRKDVGLTQEQVAKAIGITRVSVTKWENGSSK-----PDGENLHLLSKLLS 71 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ +L + + + + + +P I++ Sbjct: 72 KSPEWILYGKDDHDKIDVLRLNQHLYISDNIARLPVLTWEQAGYWDMSCPVTEIPGIKNW 131 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRL-LIKPRT 177 + + + SM LP G +++ G + + T Sbjct: 132 VDVMTKTAENSFLLHVEGDSMTNSNGLPTIPDGSTVLITPCSSNIRELVGKIILIQLEGT 191 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 ++ K + I L+SLN Y + + ++ SQ Sbjct: 192 PNVTLKKVAIDGPN-IYLLSLNPLYKPIELNVG-YTIKGKV---SQ 232 >gi|77461218|ref|YP_350725.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385221|gb|ABA76734.1| putative regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 246 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 66/227 (29%), Gaps = 21/227 (9%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR-----------NRWPSTESIFKI 61 + E N+T +G A+ G + + + R R ++W T K Sbjct: 11 KALLEAANITTTGFAKFWGTEAQNVHNWYTRGVPAYRMEEVARLLSVNSQWLKTGEGPKD 70 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + +LD G T + +I L + + T+ +P Sbjct: 71 APHLHTESGDILDAHAIRGVYTVLETNDIELPLYKE-TPVAPGSDKTHVIKDPEQTIRLP 129 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 I T SM G L ++ + + G + Sbjct: 130 RSHLETLEIRY--TDAICTHMIGNSMAEKIEDGSTLAIDRGLTQVVDGEIYAIEHDGMLR 187 Query: 182 AKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE-----WIARILWAS 222 K L G ++ L S N YP + S IE + + W S Sbjct: 188 IKYLHRMPGNALRLRSHNSAEYPDEIFRASQIEEQRIHVLGWVFWWS 234 >gi|109900545|ref|YP_663800.1| SOS-response transcriptional repressor, LexA [Pseudoalteromonas atlantica T6c] gi|122971422|sp|Q15MZ2|LEXA_PSEA6 RecName: Full=LexA repressor gi|109702826|gb|ABG42746.1| SOS-response transcriptional repressor, LexA [Pseudoalteromonas atlantica T6c] Length = 207 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 33/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I + P + +AR G + ++ R + E Sbjct: 1 MRPLTPRQEEVLQLIKTTMLETGMPPTRAEIARHLGFKSA---NAAEEHLKALARKGAIE 57 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + G G G Sbjct: 58 IL-----------------------PGTSRGIRLTEPLEDQLEDQGLPLIGRVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E+ + + D + SM + GD+L ++ V+ G ++ + Sbjct: 95 AQEHVEMHYKVDPSLFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTTDVHNGQVVVARV 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + GR + L + N + V+++ Sbjct: 155 D-EDVTVKRLERK-GRQVVLHAENEDFQPIKVDLA 187 >gi|257093704|ref|YP_003167345.1| LexA repressor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046228|gb|ACV35416.1| SOS-response transcriptional repressor, LexA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 200 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 5/177 (2%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R +E R P+ I + + + + + Sbjct: 8 QQEILDFIRNTLEFRGAPPTRAEIASAFGFASHNAAEEHLKALARKGIILLEPGSARGIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G+ V + R + D + + SM+ Sbjct: 68 LVE--QLGLPLIGSVAAGSPILAVENVQRRYALDSSLFRPRADFLLRVRGLSMINAGILD 125 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD+L ++ + + G ++ + ++ K + ++L++ N + V+ S Sbjct: 126 GDLLAVHHSSEARNGQIVVARLD-DEVTVKRF-RQHNGIVELIAENPDFEPIVVDTS 180 >gi|168821320|ref|ZP_02833320.1| LexA repressor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342098|gb|EDZ28862.1| LexA repressor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088645|emb|CBY98403.1| LexA repressor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 202 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 VQQHIEGHYQVDPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFTPIVVDLRE 183 >gi|258543098|ref|YP_003188531.1| phage transcriptional regulator and peptidase [Acetobacter pasteurianus IFO 3283-01] gi|256634176|dbj|BAI00152.1| phage transcriptional regulator and peptidase [Acetobacter pasteurianus IFO 3283-01] gi|256637236|dbj|BAI03205.1| phage transcriptional regulator and peptidase [Acetobacter pasteurianus IFO 3283-03] gi|256640288|dbj|BAI06250.1| phage transcriptional regulator and peptidase [Acetobacter pasteurianus IFO 3283-07] gi|256643345|dbj|BAI09300.1| phage transcriptional regulator and peptidase [Acetobacter pasteurianus IFO 3283-22] gi|256646400|dbj|BAI12348.1| phage transcriptional regulator and peptidase [Acetobacter pasteurianus IFO 3283-26] gi|256649453|dbj|BAI15394.1| phage transcriptional regulator and peptidase [Acetobacter pasteurianus IFO 3283-32] gi|256652439|dbj|BAI18373.1| phage transcriptional regulator and peptidase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655497|dbj|BAI21424.1| phage transcriptional regulator and peptidase [Acetobacter pasteurianus IFO 3283-12] Length = 249 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 31/238 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + R T A G + + R R + K + Sbjct: 8 QRLKTLRNRAGYTVREFAEALGYEDKYSSY--RTYETTYKREFLPIPMVKAMVPLLVDRG 65 Query: 71 QLLDLPFSDGR--------------------------TTEKKEKEIPLLYFPPSGSGGFF 104 + P + + P +G+G + Sbjct: 66 EPPITPNEVWGLAGVSAGEDGLTATVERAEEANCSRKPQKGSVRIREFDISPQAGAGAYI 125 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 D + ++ + SM P GD +++++ + Sbjct: 126 DEHCGLAESHVVLGAWEIPKNYIESYLPNSESLAIVRVVGNSMEPELNAGDRVLVDTDHK 185 Query: 165 VNCGDRLLIKPRTGDIVAKVLI---SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + D + + IV K L + ++S+N YP D +S+I R++ Sbjct: 186 IPTPDGMYVIWNGLGIVIKQLQVIPRSNPPRVRIISVNPTYPADEALLSEIVVNGRVV 243 >gi|221066455|ref|ZP_03542560.1| SOS-response transcriptional repressor, LexA [Comamonas testosteroni KF-1] gi|220711478|gb|EED66846.1| SOS-response transcriptional repressor, LexA [Comamonas testosteroni KF-1] Length = 223 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 18/215 (8%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + ++I + I R P + +A G E + + + Sbjct: 4 PKLTPRQQQILDLIQSTIARTGAPPTRAEIASTFGFKSA-------NAAEEHLQALARKG 56 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +++ T+ I D + L G G+ Sbjct: 57 VIDLVSGTSRGIRLRADTVRTINAARGASFA----LPLTALAPLVLPLVGRVAAGSPILA 112 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + D K + SM GD+L + + + G ++ + Sbjct: 113 QEHIDQSYSVEPSLFAAKPDYLLKVRGMSMRDAGIMDGDLLAVQATHEARNGQIVVAR-L 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + I+L+ N Y + V+ + Sbjct: 172 GDDVTVKRFKR-TPQGIELLPENPDYKIIHVDPEE 205 >gi|167033743|ref|YP_001668974.1| LexA repressor [Pseudomonas putida GB-1] gi|166860231|gb|ABY98638.1| transcriptional repressor, LexA family [Pseudomonas putida GB-1] Length = 205 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K+ I+E I H+ PS +A + G S + Sbjct: 4 MDNLTPKRRAIFEFIRERIAEHSQPPSLADIATRFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + A + + + G + + +L P G P G + Sbjct: 48 ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILEIPVLGQVA----AGAPIGPDLD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 + + +T D K + SM+ GD++ + G ++ + Sbjct: 101 IHE----QLLLDPSMFRRTPDYLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + G L+ N Y V+ Sbjct: 157 D-GEVTIKRLQRQGGN-YRLLPRNPAYAPIDVQPEQ 190 >gi|312867200|ref|ZP_07727410.1| peptidase S24-like protein [Streptococcus parasanguinis F0405] gi|311097329|gb|EFQ55563.1| peptidase S24-like protein [Streptococcus parasanguinis F0405] Length = 225 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 51/213 (23%), Gaps = 8/213 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----NRWPSTESIFKILAATNET 68 + LT + + + +++ + E R S+ + ++ Sbjct: 7 LKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINKDS 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L + + L S + Sbjct: 67 ALYTYPLLTPPHQKKVDQLASQLLEQQQKVVSLTAYKVLSIELAAGLGHTFYDNETDYET 126 Query: 129 GIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + D SM PLY G + ++ G + G K + Sbjct: 127 VYFDQEIQHDFASWVSGDSMEPLYPNGSVALMKQTGFDYDG-AVYALIWNGKTYIKKVYR 185 Query: 188 RRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + L S+N Y + + + ++ Sbjct: 186 -EAEGLRLESINPDYDDLFAPYEDEPKIVGIVV 217 >gi|259909947|ref|YP_002650303.1| LexA repressor [Erwinia pyrifoliae Ep1/96] gi|224965569|emb|CAX57101.1| LexA repressor [Erwinia pyrifoliae Ep1/96] gi|283480043|emb|CAY75959.1| regulator for SOS(LexA) regulon [Erwinia pyrifoliae DSM 12163] gi|310765542|gb|ADP10492.1| LexA repressor [Erwinia sp. Ejp617] Length = 202 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 3/178 (1%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R I P+ I L + + + E + Sbjct: 8 QQQVYDLIRDHINQTGMPPTRAEIAAQLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G E + D + SM + Sbjct: 68 LMMEEEVGLPLIGRVAAGEPLLAEQHIEGHYQVDPGLFKPGADFLLRVSGMSMKNIGIMD 127 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD+L ++ V G ++ + ++ K L + G ++L+ N + V++ Sbjct: 128 GDLLAVHKTEDVRNGQVVVARID-DEVTVKRL-KKNGNMVELLPENPAFQPIVVDLRQ 183 >gi|94985466|ref|YP_604830.1| putative prophage repressor [Deinococcus geothermalis DSM 11300] gi|94555747|gb|ABF45661.1| LexA-like repressor [Deinococcus geothermalis DSM 11300] Length = 236 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 13/216 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 A++ + L+ A GL +++ +R E + + + A T+ Sbjct: 16 RALEIRRLQLGLSQELAAEAGGLSQPYYSEIERGERELTT--LTHSKLLGLARALGWTLA 73 Query: 71 QLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPH 127 L D P P G+ G + I + Sbjct: 74 DLEKATGVDLGVVKAWTLAGSSPQTLAPVPNIHRVPVIGLASAGAPVADEQDERIIGWEY 133 Query: 128 NGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVA 182 + + SM R GD L ++ + + G ++ IV Sbjct: 134 PAADEYRPHMLCLQVDGESMDNGEADGLRDGDRLYVDTRDLTLQEGKVYVVHVHGNGIVV 193 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + G L S N + + I R+ Sbjct: 194 KR-ARQLGNDWWLFSDNANFSPT--RPDEATIIGRV 226 >gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 354 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 10/162 (6%) Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I +I L + T KK K+ + F + + Sbjct: 189 EIADELVPSIEDLRNEKLKKWETQYKKNKDYKNITCINKYGSVAAGIPSFACEDVEKLLY 248 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 +P ++ SM LY G+I+I+ GD ++ G+ Sbjct: 249 LP------QKYFSPAYDYFALTINGDSMNKLYEDGEIIIVRKQNYARNGDIIIACIL-GE 301 Query: 180 IVAKVLIS-RRGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218 K + +L+ N Y + +I + + Sbjct: 302 ATCKEYYFNKDDDKNELIPHSTNPKYKPQSYSNDEIIILGIV 343 Score = 37.8 bits (86), Expect = 0.97, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + LT LA++ + ++ + ++ +E PS + + N + Sbjct: 8 NNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVE-----PSIFFLINLANEMNCS 60 >gi|156932314|ref|YP_001436230.1| LexA repressor [Cronobacter sakazakii ATCC BAA-894] gi|166224568|sp|A7MPP3|LEXA_ENTS8 RecName: Full=LexA repressor gi|156530568|gb|ABU75394.1| hypothetical protein ESA_00089 [Cronobacter sakazakii ATCC BAA-894] Length = 202 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEENGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPGLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G +++L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNTVELLPENSEFKPIVVDLRE 183 >gi|295395418|ref|ZP_06805617.1| repressor LexA [Brevibacterium mcbrellneri ATCC 49030] gi|294971740|gb|EFG47616.1| repressor LexA [Brevibacterium mcbrellneri ATCC 49030] Length = 294 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 33/221 (14%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESI 58 +++ E I+ + PS + + AGL S N+ +R G R P Sbjct: 92 QRQVLECIEHAVYTNGYPPSMREIGQAAGLASLSSVAHQLNQLERLGYV--RRDPKRPRA 149 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +++ + T +P++ +G + + Sbjct: 150 LEVVNPNEIEYNDKMT------PETSANTALVPVVGRIAAGGPIT------AEQHVEDVF 197 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + SM+ GD +++ N G+ + Sbjct: 198 ALPRQVVGS-------GEMFLVQVVGDSMIDAAICDGDWVVVRKQSTANNGEIVAALLD- 249 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K L G+ L+ N Y + + + Sbjct: 250 NEATVKTLKREGGKQ-WLLPQNKDYEPI--DGDHALIMGLV 287 >gi|224079528|ref|XP_002335683.1| predicted protein [Populus trichocarpa] gi|222834533|gb|EEE73010.1| predicted protein [Populus trichocarpa] Length = 229 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 15/217 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + ++ E I ER N + S LAR G+ P + + +N ++ + Sbjct: 1 MPE-QNPQLAERIRIAMERANTPSQSELARVVGVKPQAIQYLL----DPKNNATGSKHLV 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 KI A + L + E N Sbjct: 56 KIAEALKVSAVWLATGQGEPTDVSAPSNIEPG-PDVRQGALYPLITWVQAGAWNGNCEAF 114 Query: 120 VPEIRS-PHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDRLLI 173 P + + + + + + SM + +G +L +N G ++ Sbjct: 115 TPYQAEHWYMSPHNLGPRGYVLRVRGDSMTNRQGRYSFPEGMLLFVNPDKDPTPGQFVIA 174 Query: 174 KPR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 + + K L ++N +P +EM Sbjct: 175 RREADNEATFKRYTVI-DGKPYLEAINPDWPHKYLEM 210 >gi|47768|emb|CAA45123.1| LexA protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|552020|gb|AAA27157.1| lexA [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 202 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 64/216 (29%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ + V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKSEDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFTPIVVDLRE 183 >gi|156741061|ref|YP_001431190.1| SOS-response transcriptional repressor LexA [Roseiflexus castenholzii DSM 13941] gi|156232389|gb|ABU57172.1| SOS-response transcriptional repressor, LexA [Roseiflexus castenholzii DSM 13941] Length = 218 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 56/218 (25%), Gaps = 21/218 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I+ + H PS + + TS +E + ++ Sbjct: 11 QRDILAFIEAFTQEHGYPPSIREIQDGLHISSTSVVAYNLRALESKG----------LID 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + +PLL +G + VP Sbjct: 61 RDGRVSRGIKLKNMLPVALNPARGGRVPLLGVITAGQPLPNPEDTSTA--AVEMIEVPPD 118 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI-LILNSAIQVNCGDRL-LIKPRTGDIV 181 +P + K + SM+ D ++L G + + + Sbjct: 119 VAPPEKL----QDVYALKVRGHSMIDALIDDDDIVLLRYQETAENGQMVAVRIEDDNAVT 174 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G + L N V+ + + R++ Sbjct: 175 LKRFYR-EGDKVRLQPANVTMEPIYVDATKVHIQGRVV 211 >gi|90021432|ref|YP_527259.1| LexA repressor [Saccharophagus degradans 2-40] gi|123396174|sp|Q21JT2|LEXA_SACD2 RecName: Full=LexA repressor gi|89951032|gb|ABD81047.1| SOS-response transcriptional repressor, LexA [Saccharophagus degradans 2-40] Length = 201 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 39/217 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I E P + +A + G R+ + E Sbjct: 1 MYKLTTRQQEVLDLIKSHIEDTGYPPTRAEIANQLGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + P + + N + Sbjct: 46 HLKALARK----------GAIEMVPGASRGIRLPETIQGIPLIGRVAAGNPILAEQNIED 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 VP + + K Q SM GD+L ++S QV GD ++ + Sbjct: 96 YCDVPPD-------FFYPQANYLLKVQGMSMRDAGILDGDLLAVHSTTQVKNGDIVVARI 148 Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSD 211 ++ K R +I L+ N + + V++ D Sbjct: 149 -EDEVTVKRFKRERNNATIQLLPENPDFNIIEVDLRD 184 >gi|332519788|ref|ZP_08396252.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044347|gb|EGI80541.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] Length = 258 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 18/220 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + L+ GLA + + + + P+ E + Sbjct: 4 ISKNIKHLRNLKKLSQEGLAEELNVTRSRIGSYEENRS-----SPTIEFLIAFSDYFKIP 58 Query: 69 -----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVP 121 L + P+ + + G ++ Sbjct: 59 IDILLRNDLTKAKDFSFIELNNQRVLFPITVDDANENLIEVVPVKASAGYLAGYDDPEYI 118 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTG 178 E + + + SMLP+ + G +I + ++ G ++ Sbjct: 119 EQLQKIKLPFLPTGKHRAFPIKGDSMLPM-KDGSFVIGRFIEDRSEITTGKTYILVTAND 177 Query: 179 DIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +V K + S+ LMS N Y +V + ++ I Sbjct: 178 GMVYKRVFNNIDLNNSLLLMSDNKKYHDYSVPIEEVLEIW 217 >gi|302187803|ref|ZP_07264476.1| LexA repressor [Pseudomonas syringae pv. syringae 642] Length = 205 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 4 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 48 --KHIVALTEAGLIEVVPHQARGIRLLSSEPRPELLEIPVLGRV-----AAGAPIGPDLD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + + L+ N Y V Sbjct: 157 D-GEVTIKRLQRRADQ-VRLLPRNPAYEPIIVTPDQ 190 >gi|282890197|ref|ZP_06298727.1| hypothetical protein pah_c014o055 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499854|gb|EFB42143.1| hypothetical protein pah_c014o055 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 171 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + K SM+ + DILI++ +++ + G ++ Sbjct: 62 AEDHIE--KKLDLNELLIKHPSATFFLKVSGHSMIKVGIHHNDILIVDRSLEPSHGKIVI 119 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L G+ I L++ N YP + D I ++ Sbjct: 120 -ASLNGELTVKRL-RCEGKRIQLVAENDAYPPIEISSEDDFRIWGVV 164 >gi|13559843|ref|NP_112053.1| repressor protein cI [Enterobacteria phage HK620] gi|13517579|gb|AAK28868.1|AF335538_20 repressor protein cI [Salmonella phage HK620] Length = 238 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 23/231 (9%) Query: 2 TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 S + +++ + + + + +T +A + G+ + + Sbjct: 5 KSLTTEQLEDAKRLKALYESKKKELGITQYSIADELGITQGAVGHYLNGRN-----ALNV 59 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E +I + + K + + G + Sbjct: 60 EVASGFTRLLQVSIADFSQSIAAKVAEQAESLKSDANVRYAGEYRAGKRYPVLSSIQAGS 119 Query: 116 -----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVN 166 + +I IQ K + SM +G ++ ++ + Sbjct: 120 WCEACEPYTIKDIDVWLESDAHIQGNAFWLKVEGDSMTAPVGLSIPEGTFVLFDTGREAI 179 Query: 167 CGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G ++ + + K LI G L LN +P+ + + + I Sbjct: 180 NGSLVIAKLSDSNEATFKKLIIDGGNKY-LKGLNPAWPLVPINGN-CKIIG 228 >gi|78222651|ref|YP_384398.1| SOS-response transcriptional repressor, LexA [Geobacter metallireducens GS-15] gi|123729288|sp|Q39VQ1|LEXA_GEOMG RecName: Full=LexA repressor gi|78193906|gb|ABB31673.1| SOS-response transcriptional repressor, LexA [Geobacter metallireducens GS-15] Length = 201 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 5/90 (5%) Query: 133 IQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 ++ + + SM GD+ ++ D ++ G+ K RG+ Sbjct: 107 LKGGKFFLRVKGDSMVNAAILDGDLALIRPQPTAENNDIVVAMVD-GEATLKAFYRERGQ 165 Query: 192 SIDLMSLNCCYPVDTVE--MSDIEWIARIL 219 I L N + ++ + +++ Sbjct: 166 -IRLQPRNPNMEPIIIREGEGEVAIVGKVV 194 >gi|119505861|ref|ZP_01627926.1| LexA repressor [marine gamma proteobacterium HTCC2080] gi|119458289|gb|EAW39399.1| LexA repressor [marine gamma proteobacterium HTCC2080] Length = 199 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 60/213 (28%), Gaps = 33/213 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + +++ + I R + P+ L S N ++ + R + E I Sbjct: 1 MLKLTARQEQVLDVIKRCIDDTGYPPTRAEIARELSFKSANAAEEHL-KALARKGAIEMI 59 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + G G G+ Sbjct: 60 AGASRG----------------------------IRLADTQPTGLAVVGRVAAGSPILAQ 91 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E R + D + SM+ GD+L ++S ++ + Sbjct: 92 EHIEERCSIPSHFFSPRADYLLRVSGDSMINAGILDGDLLAVHSTPVAAEQQIVVARID- 150 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K L + + L++ N Y V+++ Sbjct: 151 DEVTVKRLHRPNSQHVMLLAENEDYAPIKVDLA 183 >gi|91788814|ref|YP_549766.1| LexA repressor [Polaromonas sp. JS666] gi|123355548|sp|Q129C4|LEXA_POLSJ RecName: Full=LexA repressor gi|91698039|gb|ABE44868.1| SOS-response transcriptional repressor, LexA [Polaromonas sp. JS666] Length = 234 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 18/215 (8%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + ++I E I R P + +A + G + ++ R E Sbjct: 15 PKLTARQQQILELIQSAITRTGAPPTRAEIANELGFKSA---NAAEEHLQALARKGVIEL 71 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + L + S + + + L P G G+ Sbjct: 72 VSGTSRGIRLRSDTLRSIHESRVKQFSLPLQSLAQLALPLV--------GRVAAGSPILA 123 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 E + D K + SM GD+L + A + G ++ + Sbjct: 124 QEHIEQTYYFESSLFQRQPDYLLKVRGMSMRDAGIIDGDLLAVKQAKEARNGQIVVARI- 182 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K R I+L+ N + VE + Sbjct: 183 GDEVTVKRF-RRTKHLIELLPENPDFKTIVVEPGE 216 >gi|331082050|ref|ZP_08331178.1| LexA repressor [Lachnospiraceae bacterium 6_1_63FAA] gi|330405645|gb|EGG85175.1| LexA repressor [Lachnospiraceae bacterium 6_1_63FAA] Length = 208 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 49/219 (22%), Gaps = 30/219 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I E + PS + L TS S E++ K Sbjct: 9 KQSEILEYMKNEILNRGFPPSVREIGEAVHLKSTSSVHSH------------LETLEK-- 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 D E + G G V + Sbjct: 55 ----------NGYIRRDPTKPRAIEIVDDNFNLVRRETVNVPIIGKVSAGQPLLAVENID 104 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P Y + Q SM+ GD +I+ G +++ Sbjct: 105 GYFPIPSEYMPNNKTFMLVVQGDSMINAGIFNGDYVIVEQQQTAENGQKVVAL-VEDSAT 163 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 K I L N VE + + +++ Sbjct: 164 VKTFYK-EDGHIRLQPENDTMEPIIVEQDQFFQILGKVI 201 >gi|169634002|ref|YP_001707738.1| putative bacteriophage regulatory protein [Acinetobacter baumannii SDF] gi|169152794|emb|CAP01813.1| putative bacteriophage regulatory protein [Acinetobacter baumannii] Length = 249 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 66/242 (27%), Gaps = 29/242 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + ++ AI + + LA G+ + + + + + Sbjct: 1 MNTL-QERFNLAIKHYEQTSGKRFVKAHLADFCGVSRPAVSDWI----DKNVQTLEQSNA 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY-----------FPPSGSGGFFDSG 107 K L L ++ K L P S Sbjct: 56 EKAAKFLGVNHRWLNGLDSRMLEDISQESKNDSLYRPVMAWEAPDDLDPDSFMIIPHVDV 115 Query: 108 VFPTGNKW--NTVGVP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 F GN VP + + SM P G ++I+ Sbjct: 116 KFSAGNGRVAEFEPVPKRNGCAQPLEWFHKKRVSPKNLIEVDLDGDSMEPRIPSGSVVII 175 Query: 160 NSAI---QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + +I + ++ ++ K L R ++ + S N Y + VE D+E I Sbjct: 176 DKSINRLEQVQNRKVYAIRYGDELKIKRLSRRYDGALIIDSDNPSYEREIVEPQDLEHIG 235 Query: 217 RI 218 I Sbjct: 236 II 237 >gi|317152101|ref|YP_004120149.1| peptidase S24/S26A/S26B [Desulfovibrio aespoeensis Aspo-2] gi|316942352|gb|ADU61403.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio aespoeensis Aspo-2] Length = 156 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 6/119 (5%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 G FP+ + + + + + + SM GDIL+++ Sbjct: 36 GEAVPAGFPSPA-EDYIE--KTLDLNEYLAPRPEATFFVRVAGDSMTGASIHHGDILVVD 92 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ N G+ ++ G K L ++L N Y + I ++ Sbjct: 93 RSVTPNPGNVVIACID-GGFTVKRLQR-TAGGLELAPENPDYAPTPITPDTDFEIWGVV 149 >gi|188588091|ref|YP_001921079.1| LexA repressor [Clostridium botulinum E3 str. Alaska E43] gi|251778209|ref|ZP_04821129.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498372|gb|ACD51508.1| LexA repressor [Clostridium botulinum E3 str. Alaska E43] gi|243082524|gb|EES48414.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 201 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 36/219 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +I+E + E PS + L TS KR +G R T+ Sbjct: 8 QTEIYEFLKLYIENKGYPPSVREICEAVSLRSTSTVHGHLKRLEKKGLIRRDPTKPRA-- 65 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 K ++ + P + T N ++ +P Sbjct: 66 -------------------LEIVKNNRDKKEMINIPIVGKITAGLPILATENIEDSFPIP 106 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 H+ + + SM+ R D+ I+ S GD ++ + Sbjct: 107 LDYIKHDN------ELFMLRVSGESMVNAGIRDNDLAIIESCQTALNGDIVVALID-EEA 159 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V+ + + +++ Sbjct: 160 TIKRFFKEKD-HIRLQPENDSMNPIIVDNCSV--LGKLV 195 >gi|88861104|ref|ZP_01135739.1| LexA repressor [Pseudoalteromonas tunicata D2] gi|88817032|gb|EAR26852.1| LexA repressor [Pseudoalteromonas tunicata D2] Length = 205 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 39/225 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I + + P + +A G + E Sbjct: 1 MRPLTSRQAQILELIKVFIKDTGMPPTRAEIANTLGFKSA---------------NAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + L+ G G G Sbjct: 46 HLKALAKK-------------GFIEMVPGASRGLKLVEEDEPEQLGLPLIGRVAAGEPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + Q SM + GD+L ++ A G ++ + Sbjct: 93 AQEHIESHYHVDPLLFKPAADFLLRVQGMSMKDIGIMDGDLLAVHRATVARNGQVVVAR- 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 D+ K ++GR + L + N + V++S DIE +A Sbjct: 152 VGEDVTVKRF-EQKGRKVYLHAENDEFQPIIVDLSKESLDIEGLA 195 >gi|332525851|ref|ZP_08401992.1| LexA repressor [Rubrivivax benzoatilyticus JA2] gi|332109402|gb|EGJ10325.1| LexA repressor [Rubrivivax benzoatilyticus JA2] Length = 231 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 20/226 (8%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + ++I + + ER P + +A + G E + + + Sbjct: 5 PKLTPRQQQILDLVQSAIERTGAPPTRAEIAAELGFRSA-------NAAEEHLQALARKG 57 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +++ T+ I D + + + L P G G+ Sbjct: 58 VIELVGNTSRGIRLKSDTLRALAEARLSQHGKQFSLPLPSLAQLTLPLVGRVAAGSPILA 117 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + + D K + SM GD+L + A + G ++ + Sbjct: 118 QEHIDQSFVVEASLFQRKPDYLLKVRGMSMRDAGIMDGDLLAVQKAHEAKNGQIVVAR-L 176 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS------DIEWIA 216 D+ K + +I+L+ N + V ++ ++E IA Sbjct: 177 GDDVTVKRFRRTKA-AIELIPENPDFQTIVVPLAGSDQGFELEGIA 221 >gi|317493438|ref|ZP_07951859.1| LexA repressor [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918381|gb|EFV39719.1| LexA repressor [Enterobacteriaceae bacterium 9_2_54FAA] Length = 202 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I E+ + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVYDLIRDHIEQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + E + G G G Sbjct: 43 -------------AEEHLKALQRKGVIEIVSGASRGIRLLMEDETGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQEHIEGHYQVDPSLFKPNADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 -EDEVTVKRLKKQ-GNIVQLLPENSDFEPIVVDLRE 183 >gi|262369085|ref|ZP_06062414.1| merops peptidase family S24 [Acinetobacter johnsonii SH046] gi|262316763|gb|EEY97801.1| merops peptidase family S24 [Acinetobacter johnsonii SH046] Length = 230 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 62/230 (26%), Gaps = 17/230 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M++ +++ AI + + LAR A + + G + + Sbjct: 1 MSTL-QERMSLAIKNFEKSTGKRFKNTDLARFAEVTRANVGLWIN----GPTKELEGSKL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL-YFPPSGSGGFFDSGVFPTGNK--W 115 ++ L + L G+ Sbjct: 56 LRVSEFMGVNPLWLAGERAPMLLSDPTSLDNNIDLSQKISLEGRPIPVISWVAAGSLSSI 115 Query: 116 NTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRL 171 TV + K SM P + D + +N +Q GD + Sbjct: 116 ETVLRDTEIDEWLPPNKDCGKSGYGLKVTGMSMSPYFLPDDRIYVNPEVQTFDLQTGDLV 175 Query: 172 LIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 +I + K LI L LN +P +++ D + +++ Sbjct: 176 IIACYGETEATFKKLIIEGDNKY-LQPLNPNWPEQIIKLSEDCRLVGKVV 224 >gi|304317116|ref|YP_003852261.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778618|gb|ADL69177.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 268 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 34/256 (13%), Positives = 67/256 (26%), Gaps = 57/256 (22%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ ER+N+T +A + + K R P+ + I ++ + Sbjct: 11 NIGAVLRQLKERNNVTIHQIAEAVNVTDGAVAKYLSGE-----RKPNKQVIKRLAEFFHV 65 Query: 68 TIC-----------------------------------------QLLDLPFSDGRTTEKK 86 + L + + K Sbjct: 66 DQKVFAGTDDDIINIALEQYTSAVNQLNALKESIAEAPLNKVQEYINQLKEASNEVDKAK 125 Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQ 143 E LL + + P G Y + ++ D Sbjct: 126 EALHSLLQSSKPVTYVPVYANKIPAG-----YPNEVGTDDICDWYVVPSEIPADFAVNVT 180 Query: 144 DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM+ GDI+ + GD ++ G++ K I ++ LM N Y Sbjct: 181 GDSMINAGIDDGDIVFATINTTADYGDIIIAVSENGEVTIKYFI-QKDNQYFLMPANPDY 239 Query: 203 PVDTVEMSDIEWIARI 218 +D + + Sbjct: 240 KPIPFT-NDFRIVGIV 254 >gi|110632572|ref|YP_672780.1| putative prophage repressor [Mesorhizobium sp. BNC1] gi|110283556|gb|ABG61615.1| putative prophage repressor [Chelativorans sp. BNC1] Length = 218 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 28/219 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +K+ EAI T + L+R+ G D GR R E + K Sbjct: 1 MPKLTPEKLAEAIR----DAGFTAARLSREIGRDKDYVRDYL----IGRKRSLKAEDLEK 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + + L E E+P++ +G+ + + Sbjct: 53 IAEKLGGDLNEPSTLKEV---ALENDLSEMPVIGTIRAGAWIETYML-----EHDDQGTI 104 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL----NSAIQVNCGDRL-LIKP 175 P + + + SM G ++ +S + + G + + Sbjct: 105 PVAKDRR----FLHAKQYALAVAGDSMDLEAPDGSFVVCVDFGDSGLTLKPGMLVHVEAM 160 Query: 176 RTG--DIVAKVLISRRGRSI-DLMSLNCCYPVDTVEMSD 211 G + K + G+++ S N Y + + Sbjct: 161 EHGKSETTLKKVSFENGKTVLHPRSSNPIYKPLILGGDE 199 >gi|325287684|ref|YP_004263474.1| helix-turn-helix domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323138|gb|ADY30603.1| helix-turn-helix domain protein [Cellulophaga lytica DSM 7489] Length = 251 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 59/211 (27%), Gaps = 16/211 (7%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 T + A+ G+ T+ +R + S + + ++L L Sbjct: 16 RRDLGFTQAEFAKLLGISSTT-ADIERGRTK-----LSGKVVTELLKQFKINPLWLFGEG 69 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-- 134 + + + + + + Sbjct: 70 NQKYLSATANSVIPKFV-TVDAEDNENMVLVNAKAAAGYPQNIQDASWYKQLPAFDLPIP 128 Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGDIVAKVLISR 188 + + SMLP G+ ++ + +N +++ + ++ K + Sbjct: 129 EFRNATYRGFQVEGDSMLPNLYPGEWVLAKATESLNDISANKMYVVVLYDAVLVKKIEKV 188 Query: 189 RGRSID-LMSLNCCYPVDTVEMSDIEWIARI 218 + L+SLN YP V I+ + ++ Sbjct: 189 PNSNFVSLISLNETYPPYQVAADQIQELWQV 219 >gi|291522345|emb|CBK80638.1| SOS-response transcriptional repressor, LexA [Coprococcus catus GD/7] Length = 205 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 55/221 (24%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 ++I E I PS + L TS + + G R P+ Sbjct: 9 KQQEILEYIKSQLLAKGYPPSVREICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +IL + + P + N Sbjct: 69 EILDDEFNLARREMVN--------------------IPIVGTVTAGEPILAVENITGYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 VP P+ + + SM+ GD +I+ + GD ++ Sbjct: 109 VPSELMPN-------AELFMLAVRGESMINAGILDGDHVIVQQQSSADNGDMVVALVD-D 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N + V+ E + +++ Sbjct: 161 SATVKTFYKEED-HYRLQPQNDAFSPIIVKH--CEILGKVI 198 >gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] Length = 208 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 62/214 (28%), Gaps = 24/214 (11%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ LT + LA K G+ + + + R + + + T + Sbjct: 8 RLKRIRLDSGLTQAELADKLGITNRAVGAWESGRS--KPRLDKMKELAVLFDTTVADLMG 65 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 ++ G F+ GN + V VP + + Sbjct: 66 E-------DAAEAAISGTSRMVPLLGFAHMGDFED----EGNLADEVEVPASIADAHP-- 112 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + Q M + +L+++ ++ G +L + V + Sbjct: 113 ----RGFMVHAQGGCMDNRFPHDALLLVDPDMEPLNGQPVLAETADYGAVVRNYTR-GRS 167 Query: 192 SIDLM--SLNCCYPVDTVEMSD--IEWIARILWA 221 ++ L S + Y D + R++W Sbjct: 168 TVMLTADSHSGEYDDILAGPGDEPVVCRGRVVWY 201 >gi|288576456|ref|ZP_05978830.2| putative repressor protein [Neisseria mucosa ATCC 25996] gi|288565446|gb|EFC87006.1| putative repressor protein [Neisseria mucosa ATCC 25996] Length = 237 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 33/224 (14%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 T +A K + NK ++ P E++ KI T + LL Sbjct: 15 TLEEIASKIDMSYMGLNKVF-----AKDGLPKAETLIKIQDVTGCDLNWLLTGKGVPYLD 69 Query: 83 TEKKEKEIPLLYFPPSGS---------------GGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + E S G+ + Sbjct: 70 RARPENAGAFPVSDTGAGAVDTLGNPVDLREFVFIPRYSVEAAAGHGQTVSDEKPLFCMA 129 Query: 128 NGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Y I+ + + + SM + GD +++N A D L + D+ Sbjct: 130 FRRYWIENYVTRQTDKLSVIAVKGDSMEGILNHGDNILINHAET-EPRDGLYVLRIGNDL 188 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220 K + + + S N Y +++ +DI I R+ W Sbjct: 189 FVKNIQRLP-GRLLVKSANPLYEPFEIDLTADNTDIAIIGRVEW 231 >gi|302343271|ref|YP_003807800.1| LexA family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301639884|gb|ADK85206.1| transcriptional repressor, LexA family [Desulfarculus baarsii DSM 2075] Length = 207 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 58/196 (29%), Gaps = 11/196 (5%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 L + RF + + P+ + + +I + + ++ G + K + Sbjct: 12 LQRKTLEAICRFV-DAKGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGI 70 Query: 93 -----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 + G+ G+ + Q + SM Sbjct: 71 AVARRPSEMAASLVSVPVVGMVAAGHPILAEENITGQVLVESDVVRSGQHFALRAVGDSM 130 Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 + GD++I+ GD ++ + K L + I+L+ N Sbjct: 131 IGAGINDGDLIIVRQQPIAEDGDIVVALLN-NEATVKRL-KIKDELIELVPENPEVRKIR 188 Query: 207 V-EMSDIEWIARIL-W 220 + D+ + +++ W Sbjct: 189 IRPEDDLRVLGKVVGW 204 >gi|269137588|ref|YP_003294288.1| SOS-response transcriptional repressor (RecA-mediated autopeptidase) [Edwardsiella tarda EIB202] gi|267983248|gb|ACY83077.1| SOS-response transcriptional repressor (RecA-mediated autopeptidase) [Edwardsiella tarda EIB202] gi|304557659|gb|ADM40323.1| SOS-response repressor and protease LexA [Edwardsiella tarda FL6-60] Length = 202 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I E+ + P + +A++ G R P+ Sbjct: 1 MKALTARQQQVYDLIRDHIEQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + E + G G G Sbjct: 43 -------------AEEHLKALQRKGVIEIVSGASRGIRLLMEDETGLPLIGQVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGFYQVDPSLFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 -EDEVTVKRLKKQ-GNMVQLLPENSDFQPIVVDLRE 183 >gi|160915491|ref|ZP_02077702.1| hypothetical protein EUBDOL_01499 [Eubacterium dolichum DSM 3991] gi|158432611|gb|EDP10900.1| hypothetical protein EUBDOL_01499 [Eubacterium dolichum DSM 3991] Length = 236 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 70/223 (31%), Gaps = 23/223 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I ++ L+ ++ + + +G +R + + KI Sbjct: 15 IGKQIKNARNLKGISLDTLSELINGEKTKSTLKRYE----DGSSR-IEMDMLEKICNQIG 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRS 125 +++ E + + + + S G + P+ Sbjct: 70 LNYVDVINN-----AKDELNKSGLVEIPIVYNDYFPLHYSTNLSAGTLEELLDSEPDAIV 124 Query: 126 PHNGIY-AIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIV 181 Y I+ + K TSM + I++ + SA+ + G ++ G Sbjct: 125 YVPIKYQMIKKKLHAFKVNGTSMNNIIADNSIVVAEDVQSALNLKDGQIVV-AWVNGLAT 183 Query: 182 AKVLISRRGRSIDLMSLNCC--YPVDTV--EMSDIEWIARILW 220 K L G I LM + + + ++ + I R++W Sbjct: 184 VKRLY-VNGNQITLMPDSSDKSHQPIMINTDIDTVSIIGRVIW 225 >gi|330985358|gb|EGH83461.1| LexA repressor [Pseudomonas syringae pv. lachrymans str. M301315] Length = 202 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 45 --KHIMALTEAGLIEVVAHQARGIRLLHSEPRPELLELPVLGRV-----AAGAPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 98 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + + L+ N Y V Sbjct: 154 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 187 >gi|264678971|ref|YP_003278878.1| SOS-response transcriptional repressor, LexA [Comamonas testosteroni CNB-2] gi|262209484|gb|ACY33582.1| SOS-response transcriptional repressor, LexA [Comamonas testosteroni CNB-2] Length = 223 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 18/215 (8%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + ++I + I R P + +A G E + + + Sbjct: 4 PKLTPRQQQILDLIQSSIARTGAPPTRAEIASTFGFKSA-------NAAEEHLQALARKG 56 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +++ T+ I D + L G G+ Sbjct: 57 VIDLVSGTSRGIRLRADTVRNINAARGASFA----LPLTALAPLVLPLVGRVAAGSPILA 112 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + D K + SM GD+L + + + G ++ + Sbjct: 113 QEHIDQSYSVEPSLFAAKPDYLLKVRGMSMRDAGIMDGDLLAVQATHEARNGQIVVAR-L 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + I+L+ N Y + V+ + Sbjct: 172 GDDVTVKRFKR-TPQGIELLPENPDYKIIHVDPEE 205 >gi|299530066|ref|ZP_07043493.1| LexA repressor [Comamonas testosteroni S44] gi|298722046|gb|EFI62976.1| LexA repressor [Comamonas testosteroni S44] Length = 223 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 18/215 (8%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + ++I + I R P + +A G E + + + Sbjct: 4 PKLTPRQQQILDLIQSSIARTGAPPTRAEIASTFGFKSA-------NAAEEHLQALARKG 56 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +++ T+ I D + L G G+ Sbjct: 57 VIDLVSGTSRGIRLRADTVRTINAARGASFA----LPLTALAPLVLPLVGRVAAGSPILA 112 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + D K + SM GD+L + + + G ++ + Sbjct: 113 QEHIDQSYSVEPSLFAAKPDYLLKVRGMSMRDAGIMDGDLLAVQATHEARNGQIVVAR-L 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + I+L+ N Y + V+ + Sbjct: 172 GDDVTVKRFKR-TPQGIELLPENPDYKIIHVDPEE 205 >gi|260583479|ref|ZP_05851227.1| repressor protein [Granulicatella elegans ATCC 700633] gi|260158105|gb|EEW93173.1| repressor protein [Granulicatella elegans ATCC 700633] Length = 227 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 61/222 (27%), Gaps = 21/222 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL-------- 62 + + + + S +A++ + +++ + + + ++ I Sbjct: 5 NRLKEIRTQQGYSQSFIAKQLEISRVAYHHWENGKTIPNQK--NLIALADIFNVEASYFE 62 Query: 63 -AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTV 118 T T L ++ G ++ Sbjct: 63 SEYTIVTNYLQLHSNNQKKAEHYVEQLLHQQQSQKTLYPITVLAEVKLSAGLGKGIFDEY 122 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + SP + D Q SM P Y+ G++ ++ + G + Sbjct: 123 ETEIVYSPTEQ----RGYDIAAWIQGDSMSPAYQNGEVALIQANGFDYDG-AVYALTWNE 177 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + K L ++SLN Y + + + + ++ Sbjct: 178 AVYIKKLYRDEQG-FRMVSLNPNYSEQFIPYEENPQVVGLVV 218 >gi|33861818|ref|NP_893379.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640186|emb|CAE19721.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 207 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 8/189 (4%) Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 + + PS + K + + Q D +E + + Sbjct: 18 NWIKNYMRDFQHSPSIRQMMKAMGLKSPAPVQSRLRHLQDKGYISWQEGKARTMQIVDEI 77 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 G G G T + + I+ + SM+ GD+++ Sbjct: 78 FEGVPIMGSVAAGGLIETFSDLQENLDVSEIFR-KKDVFALTVNGDSMIDACIADGDMVL 136 Query: 159 LNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + + + G + K R I L + N Y + ++++ + Sbjct: 137 MEPIKDSFSLRNGTIVSALVPGLGTTLKYFFKR-NGKIYLEAANPAYDPIELNLNEVTFQ 195 Query: 216 ARI--LWAS 222 ++ +W S Sbjct: 196 GKLLAVWRS 204 >gi|283787278|ref|YP_003367143.1| LexA repressor [Citrobacter rodentium ICC168] gi|282950732|emb|CBG90408.1| LexA repressor [Citrobacter rodentium ICC168] Length = 202 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLHEEEDGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRE 183 >gi|163786935|ref|ZP_02181383.1| transcriptional regulator [Flavobacteriales bacterium ALC-1] gi|159878795|gb|EDP72851.1| transcriptional regulator [Flavobacteriales bacterium ALC-1] Length = 269 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 18/230 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG----RNRWPSTESIFKIL 62 + I E I + +L +++ G+ T+ + + + P + + I+ Sbjct: 2 EGIDEKISAIINHFHLNNFSFSKRIGVTGTTVDSIVNGRPQADGSRKKTKPGYDVLNAII 61 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTG------NKW 115 N L ++ K + + G + P + + Sbjct: 62 DTFNVNPDFLFSKSTIMLKSDVVKGQTYSGMPQVIAVNQTGDENVVYVPVKARAGYLDGY 121 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLL 172 E N + + + SM+ + GD++ + + G + Sbjct: 122 GDPEYIETLPSFNMPHLTNGTYRCFEVKGNSMVRTFFDGDLVFGKYVEDLNDIKDGRIYV 181 Query: 173 IKPRTGDIVAKVLISR--RGRSIDLMSLNCC--YPVDTVEMSDIEWIARI 218 I + IV K +I+R R + L S N YP T+ DI + + Sbjct: 182 IVSKNDGIVLKRVINRIAERRKLILKSDNKDGNYPTYTINAEDIVEVWYV 231 >gi|190150434|ref|YP_001968959.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303253317|ref|ZP_07339466.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248131|ref|ZP_07530159.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307261590|ref|ZP_07543258.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263779|ref|ZP_07545385.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229487613|sp|B3GXZ4|LEXA_ACTP7 RecName: Full=LexA repressor gi|189915565|gb|ACE61817.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647999|gb|EFL78206.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855308|gb|EFM87483.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306868713|gb|EFN00522.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870900|gb|EFN02638.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 210 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 34/218 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I++ + E + P+ +AR+ G + + E K LA Sbjct: 10 QQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 53 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + G G G + E Sbjct: 54 RKGYIEMLSGTSRGIRILVDNEE---------TAANDDGLPLIGKVAAGTPIMAIEHVES 104 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG D K SM + GD+L ++ G ++ + ++ Sbjct: 105 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVD-DEVTV 163 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N V+ +IE IA Sbjct: 164 KRLEKK-GDLIYLHPENDELQPIVVDPRIEYIEIEGIA 200 >gi|83311166|ref|YP_421430.1| SOS-response transcriptional repressors [Magnetospirillum magneticum AMB-1] gi|82946007|dbj|BAE50871.1| SOS-response transcriptional repressors [Magnetospirillum magneticum AMB-1] Length = 156 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + H + + SM GD+L+++ ++Q + GD ++ G Sbjct: 48 LEGKLDLHELMVKRPAATFFCRADGDSMTGAGIHSGDLLVVDRSVQPHDGDIVVATLD-G 106 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + +L S N YP +V+ D I ++ Sbjct: 107 GLTVKTL-RKTEDGWELASANPDYPSFSVDPDDGVQIWGVV 146 >gi|32035520|ref|ZP_00135463.1| COG1974: SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208580|ref|YP_001053805.1| LexA repressor [Actinobacillus pleuropneumoniae L20] gi|165976534|ref|YP_001652127.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250143|ref|ZP_07336345.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252746|ref|ZP_07534637.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255005|ref|ZP_07536823.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257161|ref|ZP_07538933.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259441|ref|ZP_07541166.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|166224549|sp|A3N1B4|LEXA_ACTP2 RecName: Full=LexA repressor gi|229487610|sp|B0BQ48|LEXA_ACTPJ RecName: Full=LexA repressor gi|126097372|gb|ABN74200.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876635|gb|ABY69683.1| probable LexA repressor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302651206|gb|EFL81360.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859778|gb|EFM91800.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861878|gb|EFM93854.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864323|gb|EFM96234.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866377|gb|EFM98240.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 210 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 34/218 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I++ + E + P+ +AR+ G + + E K LA Sbjct: 10 QQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 53 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + G G G + E Sbjct: 54 RKGYIEMLSGTSRGIRILVDNEE---------TAANDDGLPLIGKVAAGTPIMAIEHVES 104 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG D K SM + GD+L ++ G ++ + ++ Sbjct: 105 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVD-DEVTV 163 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N V+ +IE IA Sbjct: 164 KRLEKK-GDLIYLHPENDELQPIIVDPRIEYIEIEGIA 200 >gi|325277522|ref|ZP_08143120.1| putative phage repressor [Pseudomonas sp. TJI-51] gi|324097349|gb|EGB95597.1| putative phage repressor [Pseudomonas sp. TJI-51] Length = 162 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 39/146 (26%), Gaps = 12/146 (8%) Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI----------RSPHNGIYAIQTQ 136 + + G PE+ ++ Sbjct: 12 QADHGRPGLVGDEVWIAHYDVRAAMGGGQIPHDYPEMFKDVRVSPSHLRELGVEFSEHHH 71 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 SM P R D LI++ +I+ GD + I K L +++ Sbjct: 72 LKMVTGWGQSMEPTIRHRDPLIVDVSIREFVGDGIYFFAWGDHIYIKRLQIADDDHFEMI 131 Query: 197 SLNCCYPVDTVEMSDIEWIARI--LW 220 S N + + + AR+ +W Sbjct: 132 SDNSRHKDRLIRREETYIQARVLLVW 157 >gi|239906994|ref|YP_002953735.1| hypothetical protein DMR_23580 [Desulfovibrio magneticus RS-1] gi|239796860|dbj|BAH75849.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 223 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 73/227 (32%), Gaps = 10/227 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I T + +A G+ +S + +K+ + W T Sbjct: 1 MKPDNFEDAYARIQAATRAK--TQTEIAAILGIKQSSISDAKKKNTIP-DGWLVTLYRMF 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L QL + G + + PPS + S P W + Sbjct: 58 FLEPDWILYGQLPAVRRESGAAADCVRETAVAYVAPPSRVTVYAMSPTDPQTQAWIREPL 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGD 179 + + + + SM P R+G + ++ ++ GD + Sbjct: 118 ETLPLFEALR---RPNLLVVRMDNASMEPTVRRGAYVGIDCDDGRLRSGDIYALDIPGEG 174 Query: 180 IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD--IEWIARILWASQ 223 +V K + + ++L + N + T+ + + + I + W Q Sbjct: 175 LVIKRIHRDLENQRLELGADNPLHKSITLPLENPGLTSIGKAAWVIQ 221 >gi|298486616|ref|ZP_07004674.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158831|gb|EFH99893.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 255 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 72/260 (27%), Gaps = 49/260 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + ++ N+ P+ LA + G+ N G+ G+ + + Sbjct: 1 MFMTTRHS-GDRLREILKKRNIGPTELAGQLGVSTQKLNNWFTRGVPGK-------DLVQ 52 Query: 61 ILAATNETICQLLDLPFSDGRT----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + I L +E + + T + + Sbjct: 53 VANRLGVFIDWLHSGEGPQTDPDSLRGSASMREATIDHDQAGMGATPIREWDDSTPLEDD 112 Query: 117 TVGVPE----IRSPHNGIYAIQ---------------------TQDTRHKTQDTSMLPLY 151 V VP + +G +AI+ + +SMLP+ Sbjct: 113 EVSVPFLREVELAAGSGRFAIEETETAQLRFGKRSLRNNGVQSENARCVVVRGSSMLPVL 172 Query: 152 RKGDILILNSAIQVNCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDT 206 R G + +N D + G + K + I L S N Y + Sbjct: 173 RDGATVGVNVGKNALS-DIVDGDLYAINHNGQLRVKQVYRLPSG-IRLRSFNREEYQDED 230 Query: 207 VEMSD-----IEWIARILWA 221 + + + + W Sbjct: 231 YTFQEMQDQHLTILGHVFWW 250 >gi|237750713|ref|ZP_04581193.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373803|gb|EEO24194.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 218 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 62/220 (28%), Gaps = 18/220 (8%) Query: 2 TSFSHKKIWEAIDRMAERHNL-TPSGL--ARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + + +++ E I + L +P + A + P + + K + + Sbjct: 7 SPITCREVIERIKDILAIDGLLSPKDIDVAHALKISPNALAQRKFQNTIP------YQHV 60 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L N +I Q + +I LY +G ++ + Sbjct: 61 LDFLHNKNISINQFFYGSDPIEVAKHSLKYKILKLYTANVSAGALCENTEVECKDII--- 117 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 G Y + + SM G + ++ + ++ Sbjct: 118 -FDTTMLKEMGFY----ECEVVRVCGDSMEGAIHHGSLCFIDVRYKDIKNGKIYAINTKD 172 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K I L S+N Y + ++ I R+ Sbjct: 173 GVFVKQCY-HTPTHIILSSMNDIYLPIQYPLEEVNVIGRV 211 >gi|330811959|ref|YP_004356421.1| regulatory protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380067|gb|AEA71417.1| putative regulatory protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 209 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 46/198 (23%), Gaps = 15/198 (7%) Query: 39 NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 N GI R S S+ + TT + + + Sbjct: 2 NNWFNRGIPPG-RIHSIASLLTVSPEWLAHGEGPQTPLGLGPGTTYEAAENDGVYSVVEP 60 Query: 99 GSGGFFDSGVFPTGNKWN---TVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPL 150 P +P+ + + SM Sbjct: 61 TDIELPFYKEVPIAPGETKTHITEIPDQSIRLPRSHLESLEINPSDAICITMVGDSMAER 120 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEM 209 G L ++ + ++ G + K L G + L S N YP + Sbjct: 121 IADGSTLAIDRGLTQIVDGQIYALEHDGMLRIKYLHRIPGNRLRLRSHNSTAYPDEVFSA 180 Query: 210 SDIE-----WIARILWAS 222 I+ I + W S Sbjct: 181 EQIDAQHIHVIGWVFWWS 198 >gi|124267055|ref|YP_001021059.1| LexA repressor [Methylibium petroleiphilum PM1] gi|171769835|sp|A2SGY5|LEXA_METPP RecName: Full=LexA repressor gi|124259830|gb|ABM94824.1| SOS-response transcriptional repressor, LexA [Methylibium petroleiphilum PM1] Length = 225 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 61/220 (27%), Gaps = 16/220 (7%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + ++I + + ER P+ A L S N ++ + R E + Sbjct: 5 PKLTARQQQILDLVQTSIERTGSPPTRAEIAAELGFRSANAAEEHL-QALARKGVIELVG 63 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L L + + L P G G+ Sbjct: 64 GTSRGIRLKSDTLRSLNQLRNKQFSLPLPSLSQLMLPLV--------GRVAAGSPILAQE 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + D K + SM GD+L + A + G ++ + Sbjct: 116 HIDQSYAIEASMFPRRPDYLLKVRGMSMRDAGILDGDLLAVQKAREAKNGQIVVAR-LGD 174 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216 ++ K R +I+L+ N + V + E Sbjct: 175 EVTVKRFRRVR-GTIELLPENPDFEPIVVTPESGEFEIEG 213 >gi|302186533|ref|ZP_07263206.1| peptidase [Pseudomonas syringae pv. syringae 642] Length = 175 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 10/170 (5%) Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + KI A L D E + P+ + G Sbjct: 1 MAKIADACGVNALWLSDGKGDMTAVITSNEPSNVSMAEQPTRMYRYPLVSWVAAGEWSEA 60 Query: 118 VG--VPEIRSPHNGI-YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDR 170 V P ++ Y + + + SM P +G +++++ V G Sbjct: 61 VEPYAPGAADDYDVSDYKAKGPAFWLEVKGDSMTAPTAPSIPEGSQILVDTRADVRPGKL 120 Query: 171 LL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + + K L+ G L LN YP D + I ++ Sbjct: 121 VIAKLAGSNEATFKKLVEDGGVRY-LKPLNPAYPTVQCS-DDCKIIGVVV 168 >gi|299137353|ref|ZP_07030535.1| transcriptional repressor, LexA family [Acidobacterium sp. MP5ACTX8] gi|298600758|gb|EFI56914.1| transcriptional repressor, LexA family [Acidobacterium sp. MP5ACTX8] Length = 201 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 58/220 (26%), Gaps = 32/220 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + K++ + + R+ +PS +A GL+ S ++ K Sbjct: 4 TRRQKEVIDFLSSFTTRNGYSPSYEEIASGLGLN-------------------SLATVHK 44 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + ++ G G G + Sbjct: 45 HVTNLQ-------NKGLLQRAHNRSRSIDVLPQRSAKKGFDRLPLLGRIAAGKPVEAIET 97 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E S G + + + SM GD +++ G+ ++ D Sbjct: 98 AESIS--LGDIIGNREVYALEVRGDSMRDEHIVSGDYVLVERTRTAREGEIIVALIDGAD 155 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G I L N S++ ++L Sbjct: 156 ATLKRFYR-EGNLIRLQPSNTEMAPIYAPASNVSIQGKVL 194 >gi|289165190|ref|YP_003455328.1| phage repressor [Legionella longbeachae NSW150] gi|288858363|emb|CBJ12231.1| phage repressor [Legionella longbeachae NSW150] Length = 223 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 14/218 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI + I LT L L T + +R R P E I ++ A Sbjct: 5 DKIGQRIKEERVARGLTLKTLEELTDDLKQTRISNWERGY-----RTPGPEEIKQLAQAL 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + L+ L ++ + L V + + Sbjct: 60 DVSPAYLMCLTDEKQPKKKQGLNALIPLLNFQQACEAKLFIQRLKNNQNEQEVRYIPVTA 119 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 N ++ K D SM P R DILI+N +++ G+ + ++ + Sbjct: 120 EFNA--KLEEYSFALKMNDESMHPELRLNDILIINPIAKLHPGNLV-AVQLEDQVIIRRY 176 Query: 186 I----SRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 S+ S +L + N + ++ S+ I + Sbjct: 177 KQLTFSKNNNSFELKAENDHWGNIIIDKTSNYSIIGTV 214 >gi|319406695|emb|CBI80331.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 200 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 36/217 (16%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + + L+ LA + + + ++ G E R ++I ++ + Sbjct: 3 KNIIATLQILQSEFGLSQKDLANRLDVTQATVSRWL--GSESDPRGSHRDAILELYKSLK 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +P++ + +G D P + V +P Sbjct: 61 GYNQ---------------ITTLVPVMGYVGAGLEIDTDVEQIP-EDGLEKVEIP----- 99 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNC--GDRLLIKPRTGDIVA 182 + + + + TSM P+Y+ GD++++ V+ GD +++ Sbjct: 100 ----FDLPFEAIGFMVRGTSMYPVYKDGDLIVVKHLQTKPVSDYYGDEVVVLTEDNRRFI 155 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L S N ++ I+WI I+ Sbjct: 156 KQITRSSEG-IVLKSWNAD----PIKNVKIKWIGEIV 187 >gi|187932361|ref|YP_001886007.1| LexA repressor [Clostridium botulinum B str. Eklund 17B] gi|187720514|gb|ACD21735.1| LexA repressor [Clostridium botulinum B str. Eklund 17B] Length = 201 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 36/219 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 +I+E + E PS + L TS KR +G R T+ Sbjct: 8 QTEIYEFLKLYIENKGYPPSVREICEAVSLRSTSTVHGHLKRLEKKGLIRRDPTKPRA-- 65 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + ++ + P + T N ++ +P Sbjct: 66 -------------------LEIVRSNRDKKEMINIPIVGKITAGMPILATENIEDSFPIP 106 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 H+ + + SM+ R D+ I+ S GD ++ + Sbjct: 107 LDYIKHDN------ELFMLRVSGESMVNAGIRNNDLAIIESCQTALNGDIVVALID-EEA 159 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L N V+ + + +++ Sbjct: 160 TIKRFFKEKD-HIRLQPENDSMNPIIVDNCSV--LGKLV 195 >gi|26990769|ref|NP_746194.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24985769|gb|AAN69658.1|AE016600_8 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 234 Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 16/202 (7%) Query: 10 WEAIDR-MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 W A+ R E LT LA + G+ S + R P ES+ + Sbjct: 20 WIALVRDRMEELGLTQEQLAERVGVSQGSVGHWVN-----KRRQPKIESMNRTFVELGMP 74 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRS 125 + L ++ + + +P W+ + E Sbjct: 75 HY-NVSLQLRIQGQVGEERSVYEIADDDELDLMRYIVCFRYPV-LGWSELEAATAVEPAV 132 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 Y Q + ++ +M + +G ++++ ++ G ++ + + Sbjct: 133 FEQTDYLAQGKAFWLTVENDAMSAVSGRSVPQGMRMLVDPGVEAEAGRLVIARQPGKPAI 192 Query: 182 AKVLISRRGRSIDLMSLNCCYP 203 + L G+ L +LN YP Sbjct: 193 FRELAEEGGQRY-LKALNSNYP 213 >gi|330808601|ref|YP_004353063.1| phage repressor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376709|gb|AEA68059.1| putative phage repressor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 218 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 65/214 (30%), Gaps = 15/214 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +T LA + G+ R R PS E + ++L ++ Sbjct: 11 VKAKMKELRITQVVLAERLGMSQGGVGHWL-----TRRRQPSVEDMNRVLRELGLEFLEV 65 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + +T++ + + ++R +A Sbjct: 66 AMVIREPDTSTDEGLALAQKYNPYFRYPVSEWHEVGEVREG--DPGAYSQVRYELTDYHA 123 Query: 133 IQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLIS 187 + +M +G ++++ AI+ G ++ P + D + LI Sbjct: 124 L-GAAFWLVVVGDAMTAPSGLSIPEGMSILVDPAIEAVPGKLVVACLPGSSDATFRKLIE 182 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 G+ L+ LN Y + I ++ A Sbjct: 183 ESGQRY-LVPLNPTY-PKNLYTEQCRLIGVVVQA 214 >gi|301629308|ref|XP_002943785.1| PREDICTED: hypothetical protein LOC100486556 [Xenopus (Silurana) tropicalis] Length = 752 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 3/149 (2%) Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T G + + L P G G+ + Sbjct: 588 CTPGAAATATASRRFCGPSGARAVAGRMALPIPGITQLVLPLVGRVAAGSPILAQEHVDQ 647 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 D K + SM GD+L + + + G ++ + D+ Sbjct: 648 AYCVEDSLFQHKPDYLLKVRGMSMRDAGIMDGDLLAVQATREARNGQIIVAR-LGDDVTV 706 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L R I+L+ N YPV TV+ + Sbjct: 707 KRL-RRTATGIELLPENPDYPVITVQPGE 734 >gi|87198657|ref|YP_495914.1| putative phage repressor [Novosphingobium aromaticivorans DSM 12444] gi|87134338|gb|ABD25080.1| putative phage repressor [Novosphingobium aromaticivorans DSM 12444] Length = 208 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 72/229 (31%), Gaps = 39/229 (17%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ F + + + H + LA+ AGL TS R + ++ + Sbjct: 7 MSKFDIDAFRTRLQSLMDEHKIKRKPLAKAAGLGETSI----RDIFDSSRNDVRIGTLVR 62 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + ++ +L++ P R + +L+ G TV Sbjct: 63 LADYFQMSVDELIEEPE--MRLAGRVGAGGQVLFEAEDSHSGP-------------TVPK 107 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPR 176 P S + TSMLP Y GDI+ + + G+ ++ Sbjct: 108 PPGAS---------AAVMALEVVGTSMLPKYEDGDIVYVRRDVDGIPRSAIGEYCAVRTA 158 Query: 177 TGDIVAKVLIS-RRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWASQ 223 G K+L L SLN ++ W A +LW Q Sbjct: 159 EGGTYLKILAKGSEPGRFTLRSLNAPDMEN-----EEVVWAAPVLWVRQ 202 >gi|57237282|ref|YP_178295.1| transcriptional regulator, putative [Campylobacter jejuni RM1221] gi|57166086|gb|AAW34865.1| transcriptional regulator, putative [Campylobacter jejuni RM1221] Length = 210 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 64/211 (30%), Gaps = 16/211 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ E+ LT L K L ++ ++ ++I K+ + Sbjct: 7 KQIREKLGLTQEQLGNKLNLTRQQIINIEKGKTPISKKYF--DNISKLSKKFYIDKEENA 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + + + G + TG Sbjct: 65 LNKDRNKQEINFYSIPKLNISASAGGGNELIGLEEYETGEMLE--------LSKAFFKTT 116 Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-GRS 192 K SM+P+ +I + GD L I ++ K+L + Sbjct: 117 PKNVKAIKVDGYSMIPMLLPDSWVIFEEIHEYQ-GDGLYILNFDNQLMVKLLQLDPISKV 175 Query: 193 IDLMSLNCCYPVDTVEMSD--IEWI--ARIL 219 +D++S+N Y ++++ D +E I ++L Sbjct: 176 LDIISVNKDYKSYSLDLKDSQVEIIIQGKVL 206 >gi|291528304|emb|CBK93890.1| Predicted transcriptional regulator [Eubacterium rectale M104/1] Length = 243 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 27/232 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKA---GLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAA 64 E + ++ + S L G+ T+ +K + E T + ++L Sbjct: 5 GEILAENRKKKGYSQSDLVDLLSQEGIQVTTKAISKWETNAREPALHVFLT--LCQLLDI 62 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLY----------------FPPSGSGGFFDSGV 108 + + P++ ++ + + + P Sbjct: 63 EDIYESFFGENPYNIMSGLNEEGRNKLIEFADILKASKKFSPLSAKIIPFHHPVEITWEP 122 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G N + + G A + D + SM PLY GD+ + + G Sbjct: 123 VSAGTG-NYLEDSVKETYDVGHLAPEQTDFGVRISGDSMEPLYHTGDVAWIQKKDSLANG 181 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWIARIL 219 + + G+ K L + L+SLN Y +E + +++ Sbjct: 182 EIGI-FYLNGNTYIKELHDEPDG-VYLISLNQKYRPIQVLESDSFKIFGKVI 231 >gi|71065042|ref|YP_263769.1| Cro/CI family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71038027|gb|AAZ18335.1| possible transcriptional regulator, Cro/CI family [Psychrobacter arcticus 273-4] Length = 224 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 11/207 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + E +L LA G + + + + + I + Sbjct: 3 LGHRVKEAREFRSLKQGELAELIGWTQQALSTLENRDSKKSSYSAQISKALDIDIDWLIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + ++ +K K +P+ G GF+ + + V Sbjct: 63 GAGEMINTKKEAKSAKKLIKYVPVKGSAQMGDNGFWSELDYMGAGGDGYLEVNNASD--- 119 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + SM P R G ++ + + + G+ + I + G + K +S Sbjct: 120 -------SAYVIRAVGDSMFPAIRSGWYIVFDPSREACSGEYVHIVLKDGRNMVKEYVSC 172 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + ++L+S+N + D++ + Sbjct: 173 QHGIVNLISVN-GMERISFNCEDVDVL 198 >gi|320190197|gb|EFW64847.1| regulatory protein cI [Escherichia coli O157:H7 str. EC1212] Length = 215 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 65/210 (30%), Gaps = 17/210 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ-----LLDLPFSD 79 + LA G+D + ++ + G+ + + +++ I + I Sbjct: 4 ADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGVDIADLFTSAHKSNTVYK 59 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136 E + + +G+ G+ + + E R+ + Sbjct: 60 NSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P GD++ ++ +I GD + + I K L + ++ Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178 Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223 S N Y + ++L SQ Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207 >gi|145632024|ref|ZP_01787771.1| putative phage repressor [Haemophilus influenzae R3021] gi|144982313|gb|EDJ89907.1| putative phage repressor [Haemophilus influenzae R3021] Length = 184 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 63/189 (33%), Gaps = 21/189 (11%) Query: 37 SFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL-LDLPFSDGRTTEKKEKEIPLLYF 95 + ++ + + P++E+I + I L S+ +IPL+ + Sbjct: 2 AISQWESDTTK-----PNSENILDLSTVLQCDISWLLRGNGQSNVLPASIGGNKIPLISY 56 Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 +G S G+ ++ V + SM P +++ D Sbjct: 57 IQAGKWSGISSLKESCGD-FDYVFTD---------LDVSENAFALSIIGDSMEPEFKEED 106 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-----IDLMSLNCCYPVDTVEMS 210 ++I++ +Q G+ ++ + K +L+ LN YP + Sbjct: 107 VIIIDPQVQPVAGEFVVAINGDYEATFKKYRPLEIDEYGRTQFELIPLNSDYPKMSSLKQ 166 Query: 211 DIEWIARIL 219 I I ++ Sbjct: 167 QISIIGTMV 175 >gi|104779883|ref|YP_606381.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95108870|emb|CAK13566.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 232 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 64/225 (28%), Gaps = 17/225 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRNRWPSTESIFKILAATNET 68 + + + + NLTPS A + + P N KR + R E I + Sbjct: 5 GDRLKALLQECNLTPSDFAAQRKVTPQHVNNWLKRGVPQAR-----VEEIAGLFCVHPRW 59 Query: 69 IC--QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEI 123 + + P + +E P G+ P + V P Sbjct: 60 LRSGEGPKHPGPFTPPRPARPREEPPAPLLALGAERVPLPLFHPHESGLEAVPGLHQPIP 119 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 R + + +M P +G +L ++ + G + Sbjct: 120 REALDRVRVATQHAFCIGMPANNMAPYLPQGTLLAVDRSFTRVVEGECYALLHNGKLRVH 179 Query: 184 VLISRRGRSIDLMS---LN---CCYPVDTVEMSDIEWIARILWAS 222 L R ++ L S LN Y +E + + W S Sbjct: 180 QLTLGRHGTLCLHSHDRLNHPTERYTAYQRRAQHLEILGWVFWWS 224 >gi|303233230|ref|ZP_07319902.1| repressor LexA [Atopobium vaginae PB189-T1-4] gi|302480620|gb|EFL43708.1| repressor LexA [Atopobium vaginae PB189-T1-4] Length = 213 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 57/220 (25%), Gaps = 30/220 (13%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFK 60 ++I+E I + H PS + GL P++ + R E R P Sbjct: 10 QQEIYEYICEYSAAHGYPPSVREIGAAVGLRSPSTVHTHLRVLQEFGYIKRDPKKPRALL 69 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + P ++ + P + N + V Sbjct: 70 L-------------TPTVTHQSGTEAIVSAQGSIKLPVVGRVAAGVPILAAQNVEEYMQV 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P A + + SM + D +++ G+ ++ + Sbjct: 117 PSTI-------AGDKAAFILQVRGESMKNIGINNNDYIVVQQQDTARNGEIVIALID-NE 168 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N VE + +++ Sbjct: 169 CTVKRFFKEE-HYVRLQPENDTMQPIFVENP--VILGKVI 205 >gi|317127867|ref|YP_004094149.1| LexA repressor [Bacillus cellulosilyticus DSM 2522] gi|315472815|gb|ADU29418.1| LexA repressor [Bacillus cellulosilyticus DSM 2522] Length = 808 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + N A SM+ KGD +I+N + GD ++ Sbjct: 706 YESVIVLPNDWIASPNDTFALTVTGDSMIGAGIDKGDQVIVNRQNVASNGDIVIAII-EE 764 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + G S+ L+S N Y ++ D+ +++ Sbjct: 765 EATMKKFM-LMGDSVLLISENSSYEPIQMKREDVLINGKVI 804 >gi|307308739|ref|ZP_07588435.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306900745|gb|EFN31356.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 272 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 33/232 (14%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 W+ +D + + LAR++G+ + NK R IE + R + E++ + + + Sbjct: 42 WKRLDERRKELGWNKAELARRSGIPYDNINKYLRGEIE-QPRGDALETLARTIKRPLLWL 100 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +++ + + L+ +G+ + ++ I P + Sbjct: 101 RDGIEVEGGELVPAPGRLVAGALVGKAEAGTFREV--------DAFDQAEREVIAVPPDE 152 Query: 130 IYAIQTQDTRHKTQDTSMLP----LYRKGDILI------LNSAIQVNCGDRLLIKPRTG- 178 + + SM GD LI + + G ++++ Sbjct: 153 RFP-NARILVFDVAGDSMNDLRPRPILDGDRLICVAYEDVAHEAVLRDGMVVVVERTRDG 211 Query: 179 ----DIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMS-------DIEWIARI 218 + K + +GR+ S N + VE +E + + Sbjct: 212 GQTREWSVKQVEIYQGRTEFHPRSTNPKHKPIVVERDVFADDGSQVEVVGLV 263 >gi|238925885|ref|YP_002939403.1| putative prophage repressor [Eubacterium rectale ATCC 33656] gi|238877562|gb|ACR77269.1| putative prophage repressor [Eubacterium rectale ATCC 33656] Length = 243 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 69/232 (29%), Gaps = 27/232 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKA---GLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAA 64 E + ++ + S L G+ T+ +K + E T + ++L Sbjct: 5 GEILAENRKKKGYSQSDLVNLLSQEGIQVTTKALSKWENNAREPALHVFLT--LCQLLDI 62 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLY----------------FPPSGSGGFFDSGV 108 + + P++ ++ + + + P Sbjct: 63 EDIYESFFGENPYNIMSGLNEEGRNKLIEFADILKASKKFSPLSAKIIPFHHPVEITWEP 122 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G N + + G A + D + SM PLY D+ + + G Sbjct: 123 VSAGTG-NYLEDSVKETYDVGHLAPEQTDFGVRISGDSMEPLYHTDDVAWIQKKDSLANG 181 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWIARIL 219 + + G+ K L + L+SLN Y +E + +++ Sbjct: 182 EIGI-FYLNGNTYIKELHDEPDG-VYLISLNQKYRPIQVLESDSFKIFGKVI 231 >gi|319405045|emb|CBI78654.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 205 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 36/216 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ NLT +AR+ + S +K + + R + ++I ++ Sbjct: 6 NIISTLKKILTEFNLTQEDVARRLNVTQASVSKWLK---DSDPRGSNRDAILELYKELKG 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +PL+ + +G+ P + + +P Sbjct: 63 DNHLTTF---------------VPLMGYIGAGTQIDPSFEQIP-EDGLEQIEIP------ 100 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAK 183 + + + + SMLP+Y+ GD++I I+ G +I K Sbjct: 101 ---FVLPDDMIAFEVKGDSMLPVYKNGDMVIARRRQIKTIEYFFGKEAVILTHDNKRYIK 157 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + IDL+S N P + + I WI I Sbjct: 158 QISRGMNGEIDLLSWNA--PPI--KNAKITWIGEIF 189 >gi|254416693|ref|ZP_05030443.1| LexA repressor [Microcoleus chthonoplastes PCC 7420] gi|196176433|gb|EDX71447.1| LexA repressor [Microcoleus chthonoplastes PCC 7420] Length = 201 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 55/191 (28%), Gaps = 8/191 (4%) Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 I+ PS + + + + Q + + E + + Sbjct: 11 LYNWLVDYIQTAQHAPSIRQMMRAMNLRSPAPIQSRLEHLRNKGYIDWTEGKARTIRILS 70 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDI 156 S + G G G R +G++ + SM L R+GD+ Sbjct: 71 STASGVPVLGAIAAGGMVEPFTDGMDRIDLSGLFTQPGN-FALRVTGDSMIEALIREGDL 129 Query: 157 LILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 +I+ + G + + K + I L N YP VE +E Sbjct: 130 VIMQPVPEPDQLKNGQIVAARVEGYGTTLKHFYRQED-RITLQPANSNYPPIEVETEKVE 188 Query: 214 WIARI--LWAS 222 + +W S Sbjct: 189 VQGVLVGVWRS 199 >gi|260771651|ref|ZP_05880571.1| SOS-response repressor and protease LexA [Vibrio metschnikovii CIP 69.14] gi|260613428|gb|EEX38627.1| SOS-response repressor and protease LexA [Vibrio metschnikovii CIP 69.14] Length = 208 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 61/214 (28%), Gaps = 32/214 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++++E I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFELIKSKIEETGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK----------QVIEIVPGASRGIRILVGAANDAEQDLGLPLIGRVAAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + Q SM + GD+L ++ V G ++ + Sbjct: 96 AQEHIEAHYHVDPSMFRPQADFLLRVQGESMKDIGIMDGDLLAVHKTQDVRNGQVVVAR- 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + + L + N + V++ Sbjct: 155 VEEDVTVKRLERKGA-KVWLHAENDAFAPIEVDL 187 >gi|144897419|emb|CAM74283.1| SOS mutagenesis protein UmuD [Magnetospirillum gryphiswaldense MSR-1] Length = 192 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 8/150 (5%) Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGI 130 + + F P+ S + P G + + H + Sbjct: 37 MFSRHENAPLPPGTRLASSRAFVPADGAAPIYSALVPAGFPSPADDHLE--GKLDLHELM 94 Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + SM GD+L+++ ++Q GD ++ G + K L + Sbjct: 95 VKRPAATFFCRADGDSMTGAGIHSGDLLVVDRSVQPQDGDIVVATLD-GGLTVKTL-RKT 152 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +L N YP + D I ++ Sbjct: 153 TEGWELAPANPDYPSFPLNQEDGVQIWGVV 182 >gi|126665024|ref|ZP_01736007.1| LexA repressor [Marinobacter sp. ELB17] gi|126630394|gb|EBA01009.1| LexA repressor [Marinobacter sp. ELB17] Length = 202 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 3/159 (1%) Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 E ++ + + L G + G G G+ Sbjct: 27 RAEIAAELGFRSANAAEEHLRALARKGAIEMVPGASRGIRLPESEQDLGLPVIGQVAAGS 86 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 E + D + + SM + GD+L ++S V+ G ++ Sbjct: 87 PILAQEHVEDHCTLKPGFFSPAADYLLRVRGMSMKNIGILDGDLLAVHSTQDVHNGQIVV 146 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 + ++ K + G + L++ N + V++++ Sbjct: 147 AR-VGDEVTVKRF-RKEGNKVYLVAENDDFAPIEVDLTE 183 >gi|73749412|ref|YP_308651.1| LexA repressor [Dehalococcoides sp. CBDB1] gi|289433370|ref|YP_003463243.1| transcriptional repressor, LexA family [Dehalococcoides sp. GT] gi|73661128|emb|CAI83735.1| LexA repressor [Dehalococcoides sp. CBDB1] gi|288947090|gb|ADC74787.1| transcriptional repressor, LexA family [Dehalococcoides sp. GT] Length = 214 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 60/213 (28%), Gaps = 23/213 (10%) Query: 11 EAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I R R+ PS + + TS + + + K Sbjct: 14 DFIARFRRRYGYPPSIRDIVSGCNISSTSVVDY------------NLKILQK------MG 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + +E + P G P + + V E Sbjct: 56 LIRRQAEISRGIELVGTEETNEGRISIPVIGQIAAGTPIPVPESDSFAVVTSDESIEVTE 115 Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLI 186 + + + + SM L GD++I+ V+ G+ + ++ K + Sbjct: 116 DLTRGRGNIYALRVKGVSMIEDLINDGDLVIMQHTQTVDNGETAAVWLKDQKEVTLKRVY 175 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L N P + ++E R++ Sbjct: 176 -MEPGRVRLQPANRTMPPIYTKPDNVEIQGRVI 207 >gi|120554924|ref|YP_959275.1| LexA repressor [Marinobacter aquaeolei VT8] gi|171769189|sp|A1U269|LEXA_MARAV RecName: Full=LexA repressor gi|120324773|gb|ABM19088.1| SOS-response transcriptional repressor, LexA [Marinobacter aquaeolei VT8] Length = 202 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 61/207 (29%), Gaps = 31/207 (14%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + I R + P+ A L S N ++ E + + Sbjct: 7 QSQVLDIIRRYVDETGYPPTRAEIAAELGFRSANAAE-------------EHLRALARK- 52 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 G + G G G+ E Sbjct: 53 --------------GAIEMVPGASRGIRLPEAEEDLGLPVIGQVAAGSPILAQEHIEDHC 98 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + D + + SM + GD+L ++S V+ G ++ + ++ K Sbjct: 99 TLQPGFFSPSADYLLRVRGMSMKDIGILDGDLLAVHSTQDVHNGQIVVAR-VGEEVTVKR 157 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD 211 R G + L++ N + V++++ Sbjct: 158 F-RREGNKVWLIAENEEFAPIEVDLAE 183 >gi|15804636|ref|NP_290677.1| LexA repressor [Escherichia coli O157:H7 EDL933] gi|15834280|ref|NP_313053.1| LexA repressor [Escherichia coli O157:H7 str. Sakai] gi|16131869|ref|NP_418467.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli str. K-12 substr. MG1655] gi|24115367|ref|NP_709877.1| LexA repressor [Shigella flexneri 2a str. 301] gi|26250826|ref|NP_756866.1| LexA repressor [Escherichia coli CFT073] gi|30064633|ref|NP_838804.1| LexA repressor [Shigella flexneri 2a str. 2457T] gi|74314537|ref|YP_312956.1| LexA repressor [Shigella sonnei Ss046] gi|82546388|ref|YP_410335.1| LexA repressor [Shigella boydii Sb227] gi|82779547|ref|YP_405896.1| LexA repressor [Shigella dysenteriae Sd197] gi|89110764|ref|AP_004544.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. W3110] gi|91213566|ref|YP_543552.1| LexA repressor [Escherichia coli UTI89] gi|110644380|ref|YP_672110.1| LexA repressor [Escherichia coli 536] gi|110807940|ref|YP_691460.1| LexA repressor [Shigella flexneri 5 str. 8401] gi|117626311|ref|YP_859634.1| LexA repressor [Escherichia coli APEC O1] gi|157156057|ref|YP_001465544.1| LexA repressor [Escherichia coli E24377A] gi|157163512|ref|YP_001460830.1| LexA repressor [Escherichia coli HS] gi|168750824|ref|ZP_02775846.1| LexA repressor [Escherichia coli O157:H7 str. EC4113] gi|168755195|ref|ZP_02780202.1| LexA repressor [Escherichia coli O157:H7 str. EC4401] gi|168760890|ref|ZP_02785897.1| LexA repressor [Escherichia coli O157:H7 str. EC4501] gi|168766285|ref|ZP_02791292.1| LexA repressor [Escherichia coli O157:H7 str. EC4486] gi|168774382|ref|ZP_02799389.1| LexA repressor [Escherichia coli O157:H7 str. EC4196] gi|168780437|ref|ZP_02805444.1| LexA repressor [Escherichia coli O157:H7 str. EC4076] gi|168784640|ref|ZP_02809647.1| LexA repressor [Escherichia coli O157:H7 str. EC869] gi|168798312|ref|ZP_02823319.1| LexA repressor [Escherichia coli O157:H7 str. EC508] gi|170021959|ref|YP_001726913.1| LexA repressor [Escherichia coli ATCC 8739] gi|170083500|ref|YP_001732820.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli str. K-12 substr. DH10B] gi|170684246|ref|YP_001746433.1| LexA repressor [Escherichia coli SMS-3-5] gi|170769501|ref|ZP_02903954.1| LexA repressor [Escherichia albertii TW07627] gi|187732664|ref|YP_001882734.1| LexA repressor [Shigella boydii CDC 3083-94] gi|188495882|ref|ZP_03003152.1| LexA repressor [Escherichia coli 53638] gi|191167472|ref|ZP_03029286.1| LexA repressor [Escherichia coli B7A] gi|191171962|ref|ZP_03033507.1| LexA repressor [Escherichia coli F11] gi|193063001|ref|ZP_03044093.1| LexA repressor [Escherichia coli E22] gi|193067911|ref|ZP_03048877.1| LexA repressor [Escherichia coli E110019] gi|194426760|ref|ZP_03059313.1| LexA repressor [Escherichia coli B171] gi|194437208|ref|ZP_03069306.1| LexA repressor [Escherichia coli 101-1] gi|195935810|ref|ZP_03081192.1| LexA repressor [Escherichia coli O157:H7 str. EC4024] gi|208805980|ref|ZP_03248317.1| LexA repressor [Escherichia coli O157:H7 str. EC4206] gi|208812141|ref|ZP_03253470.1| LexA repressor [Escherichia coli O157:H7 str. EC4045] gi|208818676|ref|ZP_03258996.1| LexA repressor [Escherichia coli O157:H7 str. EC4042] gi|209400985|ref|YP_002273564.1| LexA repressor [Escherichia coli O157:H7 str. EC4115] gi|209921526|ref|YP_002295610.1| LexA repressor [Escherichia coli SE11] gi|215489381|ref|YP_002331812.1| LexA repressor [Escherichia coli O127:H6 str. E2348/69] gi|217325242|ref|ZP_03441326.1| LexA repressor [Escherichia coli O157:H7 str. TW14588] gi|218556600|ref|YP_002389514.1| LexA repressor [Escherichia coli IAI1] gi|218561113|ref|YP_002394026.1| LexA repressor [Escherichia coli S88] gi|218692328|ref|YP_002400540.1| LexA repressor [Escherichia coli ED1a] gi|218697751|ref|YP_002405418.1| LexA repressor [Escherichia coli 55989] gi|218702708|ref|YP_002410337.1| LexA repressor [Escherichia coli IAI39] gi|218707665|ref|YP_002415184.1| LexA repressor [Escherichia coli UMN026] gi|227886951|ref|ZP_04004756.1| repressor lexA [Escherichia coli 83972] gi|237703600|ref|ZP_04534081.1| regulator for SOS(lexA) regulon [Escherichia sp. 3_2_53FAA] gi|238903152|ref|YP_002928948.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli BW2952] gi|253775329|ref|YP_003038160.1| LexA repressor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037039|ref|ZP_04871116.1| LexA repressor [Escherichia sp. 1_1_43] gi|254163979|ref|YP_003047087.1| LexA repressor [Escherichia coli B str. REL606] gi|254796045|ref|YP_003080882.1| LexA repressor [Escherichia coli O157:H7 str. TW14359] gi|256019632|ref|ZP_05433497.1| LexA repressor [Shigella sp. D9] gi|256024916|ref|ZP_05438781.1| LexA repressor [Escherichia sp. 4_1_40B] gi|260846837|ref|YP_003224615.1| DNA-binding transcriptional repressor LexA of SOS regulon [Escherichia coli O103:H2 str. 12009] gi|260858153|ref|YP_003232044.1| DNA-binding transcriptional repressor LexA of SOS regulon [Escherichia coli O26:H11 str. 11368] gi|260870756|ref|YP_003237158.1| DNA-binding transcriptional repressor LexA of SOS regulon [Escherichia coli O111:H- str. 11128] gi|261223440|ref|ZP_05937721.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli O157:H7 str. FRIK2000] gi|261256975|ref|ZP_05949508.1| DNA-binding transcriptional repressor LexA of SOS regulon [Escherichia coli O157:H7 str. FRIK966] gi|291285460|ref|YP_003502278.1| LexA repressor [Escherichia coli O55:H7 str. CB9615] gi|293402682|ref|ZP_06646779.1| LexA repressor [Escherichia coli FVEC1412] gi|293407776|ref|ZP_06651616.1| LexA repressor [Escherichia coli B354] gi|293417548|ref|ZP_06660170.1| LexA repressor [Escherichia coli B185] gi|293476348|ref|ZP_06664756.1| LexA repressor [Escherichia coli B088] gi|298378211|ref|ZP_06988095.1| LexA repressor [Escherichia coli FVEC1302] gi|300817962|ref|ZP_07098175.1| repressor LexA [Escherichia coli MS 107-1] gi|300823583|ref|ZP_07103711.1| repressor LexA [Escherichia coli MS 119-7] gi|300899840|ref|ZP_07118054.1| repressor LexA [Escherichia coli MS 198-1] gi|300906353|ref|ZP_07124051.1| repressor LexA [Escherichia coli MS 84-1] gi|300917310|ref|ZP_07133983.1| repressor LexA [Escherichia coli MS 115-1] gi|300924305|ref|ZP_07140284.1| repressor LexA [Escherichia coli MS 182-1] gi|300929782|ref|ZP_07145234.1| repressor LexA [Escherichia coli MS 187-1] gi|300938179|ref|ZP_07152949.1| repressor LexA [Escherichia coli MS 21-1] gi|300946614|ref|ZP_07160873.1| repressor LexA [Escherichia coli MS 116-1] gi|300957548|ref|ZP_07169755.1| repressor LexA [Escherichia coli MS 175-1] gi|300980485|ref|ZP_07175032.1| repressor LexA [Escherichia coli MS 200-1] gi|300992956|ref|ZP_07180111.1| repressor LexA [Escherichia coli MS 45-1] gi|301019157|ref|ZP_07183358.1| repressor LexA [Escherichia coli MS 196-1] gi|301021562|ref|ZP_07185565.1| repressor LexA [Escherichia coli MS 69-1] gi|301046990|ref|ZP_07194100.1| repressor LexA [Escherichia coli MS 185-1] gi|301302721|ref|ZP_07208850.1| repressor LexA [Escherichia coli MS 124-1] gi|301330584|ref|ZP_07223192.1| repressor LexA [Escherichia coli MS 78-1] gi|301645030|ref|ZP_07244993.1| repressor LexA [Escherichia coli MS 146-1] gi|306815844|ref|ZP_07449989.1| LexA repressor [Escherichia coli NC101] gi|307140733|ref|ZP_07500089.1| LexA repressor [Escherichia coli H736] gi|307312114|ref|ZP_07591751.1| transcriptional repressor, LexA family [Escherichia coli W] gi|309795850|ref|ZP_07690264.1| repressor LexA [Escherichia coli MS 145-7] gi|312965297|ref|ZP_07779530.1| lexA repressor [Escherichia coli 2362-75] gi|312974164|ref|ZP_07788335.1| lexA repressor [Escherichia coli 1827-70] gi|331644783|ref|ZP_08345900.1| repressor LexA [Escherichia coli H736] gi|331649903|ref|ZP_08350980.1| repressor LexA [Escherichia coli M605] gi|331655863|ref|ZP_08356851.1| repressor LexA [Escherichia coli M718] gi|331660611|ref|ZP_08361543.1| repressor LexA [Escherichia coli TA206] gi|331665713|ref|ZP_08366607.1| repressor LexA [Escherichia coli TA143] gi|331670905|ref|ZP_08371739.1| repressor LexA [Escherichia coli TA271] gi|331675527|ref|ZP_08376275.1| repressor LexA [Escherichia coli TA280] gi|331680172|ref|ZP_08380831.1| repressor LexA [Escherichia coli H591] gi|331685790|ref|ZP_08386371.1| repressor LexA [Escherichia coli H299] gi|332280763|ref|ZP_08393176.1| regulator for SOS(lexA) regulon [Shigella sp. D9] gi|67467379|sp|P0A7C2|LEXA_ECOLI RecName: Full=LexA repressor gi|67467382|sp|P0A7C3|LEXA_ECOL6 RecName: Full=LexA repressor gi|67467383|sp|P0A7C4|LEXA_ECO57 RecName: Full=LexA repressor gi|67467384|sp|P0A7C5|LEXA_SHIFL RecName: Full=LexA repressor gi|123084316|sp|Q1R3P3|LEXA_ECOUT RecName: Full=LexA repressor gi|123342192|sp|Q0SXR0|LEXA_SHIF8 RecName: Full=LexA repressor gi|123343331|sp|Q0TA20|LEXA_ECOL5 RecName: Full=LexA repressor gi|123755500|sp|Q31TV1|LEXA_SHIBS RecName: Full=LexA repressor gi|123759496|sp|Q3YUU1|LEXA_SHISS RecName: Full=LexA repressor gi|123769502|sp|Q327V0|LEXA_SHIDS RecName: Full=LexA repressor gi|166224567|sp|A1AIM0|LEXA_ECOK1 RecName: Full=LexA repressor gi|166990799|sp|A7ZUR5|LEXA_ECO24 RecName: Full=LexA repressor gi|166990800|sp|A8A7E3|LEXA_ECOHS RecName: Full=LexA repressor gi|189046536|sp|B1IUK9|LEXA_ECOLC RecName: Full=LexA repressor gi|226694232|sp|B5Z184|LEXA_ECO5E RecName: Full=LexA repressor gi|226694233|sp|B6I5Q8|LEXA_ECOSE RecName: Full=LexA repressor gi|226736097|sp|B7MJ33|LEXA_ECO45 RecName: Full=LexA repressor gi|226736098|sp|B7NSK5|LEXA_ECO7I RecName: Full=LexA repressor gi|226736099|sp|B7M7V6|LEXA_ECO8A RecName: Full=LexA repressor gi|226736100|sp|B7NFY7|LEXA_ECOLU RecName: Full=LexA repressor gi|226736101|sp|B1LPK8|LEXA_ECOSM RecName: Full=LexA repressor gi|229621211|sp|B1XC42|LEXA_ECODH RecName: Full=LexA repressor gi|229621750|sp|B2TX73|LEXA_SHIB3 RecName: Full=LexA repressor gi|254809096|sp|B7UPK4|LEXA_ECO27 RecName: Full=LexA repressor gi|254809097|sp|B7LAZ0|LEXA_ECO55 RecName: Full=LexA repressor gi|254809098|sp|B7N2Q0|LEXA_ECO81 RecName: Full=LexA repressor gi|259494472|sp|C5A136|LEXA_ECOBW RecName: Full=LexA repressor gi|12518992|gb|AAG59242.1|AE005637_6 regulator for SOS(lexA) regulon [Escherichia coli O157:H7 str. EDL933] gi|26111257|gb|AAN83440.1|AE016770_240 LexA repressor [Escherichia coli CFT073] gi|146608|gb|AAA24067.1| SOS function regulatory protein (lexA) [Escherichia coli] gi|396378|gb|AAC43137.1| ORF_o202b [Escherichia coli str. K-12 substr. MG1655] gi|1790476|gb|AAC77013.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli str. K-12 substr. MG1655] gi|13364503|dbj|BAB38449.1| regulator for SOS regulon [Escherichia coli O157:H7 str. Sakai] gi|24054674|gb|AAN45584.1| regulator for SOS(lexA) regulon [Shigella flexneri 2a str. 301] gi|30042892|gb|AAP18615.1| regulator for SOS(lexA) regulon [Shigella flexneri 2a str. 2457T] gi|73858014|gb|AAZ90721.1| regulator for SOS(lexA) regulon [Shigella sonnei Ss046] gi|81243695|gb|ABB64405.1| regulator for SOS regulon [Shigella dysenteriae Sd197] gi|81247799|gb|ABB68507.1| regulator for SOS(lexA) regulon [Shigella boydii Sb227] gi|85676795|dbj|BAE78045.1| DNA-binding transcriptional repressor [Escherichia coli str. K12 substr. W3110] gi|91075140|gb|ABE10021.1| LexA, subunit of LexA transcriptional repressor [Escherichia coli UTI89] gi|110345972|gb|ABG72209.1| LexA repressor [Escherichia coli 536] gi|110617488|gb|ABF06155.1| regulator for SOS(lexA) regulon [Shigella flexneri 5 str. 8401] gi|115515435|gb|ABJ03510.1| LexA repressor [Escherichia coli APEC O1] gi|157069192|gb|ABV08447.1| LexA repressor [Escherichia coli HS] gi|157078087|gb|ABV17795.1| LexA repressor [Escherichia coli E24377A] gi|169756887|gb|ACA79586.1| transcriptional repressor, LexA family [Escherichia coli ATCC 8739] gi|169891335|gb|ACB05042.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli str. K-12 substr. DH10B] gi|170121558|gb|EDS90489.1| LexA repressor [Escherichia albertii TW07627] gi|170521964|gb|ACB20142.1| LexA repressor [Escherichia coli SMS-3-5] gi|187429656|gb|ACD08930.1| LexA repressor [Shigella boydii CDC 3083-94] gi|187769832|gb|EDU33676.1| LexA repressor [Escherichia coli O157:H7 str. EC4196] gi|188015015|gb|EDU53137.1| LexA repressor [Escherichia coli O157:H7 str. EC4113] gi|188491081|gb|EDU66184.1| LexA repressor [Escherichia coli 53638] gi|189001764|gb|EDU70750.1| LexA repressor [Escherichia coli O157:H7 str. EC4076] gi|189357457|gb|EDU75876.1| LexA repressor [Escherichia coli O157:H7 str. EC4401] gi|189364225|gb|EDU82644.1| LexA repressor [Escherichia coli O157:H7 str. EC4486] gi|189368539|gb|EDU86955.1| LexA repressor [Escherichia coli O157:H7 str. EC4501] gi|189375044|gb|EDU93460.1| LexA repressor [Escherichia coli O157:H7 str. EC869] gi|189379093|gb|EDU97509.1| LexA repressor [Escherichia coli O157:H7 str. EC508] gi|190902514|gb|EDV62249.1| LexA repressor [Escherichia coli B7A] gi|190907727|gb|EDV67321.1| LexA repressor [Escherichia coli F11] gi|192931260|gb|EDV83862.1| LexA repressor [Escherichia coli E22] gi|192958886|gb|EDV89323.1| LexA repressor [Escherichia coli E110019] gi|194415096|gb|EDX31365.1| LexA repressor [Escherichia coli B171] gi|194423764|gb|EDX39753.1| LexA repressor [Escherichia coli 101-1] gi|208725781|gb|EDZ75382.1| LexA repressor [Escherichia coli O157:H7 str. EC4206] gi|208733418|gb|EDZ82105.1| LexA repressor [Escherichia coli O157:H7 str. EC4045] gi|208738799|gb|EDZ86481.1| LexA repressor [Escherichia coli O157:H7 str. EC4042] gi|209162385|gb|ACI39818.1| LexA repressor [Escherichia coli O157:H7 str. EC4115] gi|209751318|gb|ACI73966.1| regulator for SOS regulon [Escherichia coli] gi|209751320|gb|ACI73967.1| regulator for SOS regulon [Escherichia coli] gi|209751322|gb|ACI73968.1| regulator for SOS regulon [Escherichia coli] gi|209751324|gb|ACI73969.1| regulator for SOS regulon [Escherichia coli] gi|209751326|gb|ACI73970.1| regulator for SOS regulon [Escherichia coli] gi|209914785|dbj|BAG79859.1| SOS response regulator [Escherichia coli SE11] gi|215267453|emb|CAS11906.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli O127:H6 str. E2348/69] gi|217321463|gb|EEC29887.1| LexA repressor [Escherichia coli O157:H7 str. TW14588] gi|218354483|emb|CAV01328.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli 55989] gi|218363369|emb|CAR01022.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli IAI1] gi|218367882|emb|CAR05677.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli S88] gi|218372694|emb|CAR20570.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli IAI39] gi|218429892|emb|CAR10719.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli ED1a] gi|218434762|emb|CAR15695.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli UMN026] gi|222035757|emb|CAP78502.1| LexA repressor [Escherichia coli LF82] gi|226840145|gb|EEH72147.1| LexA repressor [Escherichia sp. 1_1_43] gi|226901512|gb|EEH87771.1| regulator for SOS(lexA) regulon [Escherichia sp. 3_2_53FAA] gi|227836092|gb|EEJ46558.1| repressor lexA [Escherichia coli 83972] gi|238860987|gb|ACR62985.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli BW2952] gi|242379572|emb|CAQ34392.1| LexA transcriptional repressor [Escherichia coli BL21(DE3)] gi|253326373|gb|ACT30975.1| SOS-response transcriptional repressor, LexA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975880|gb|ACT41551.1| LexA repressor [Escherichia coli B str. REL606] gi|253980036|gb|ACT45706.1| LexA repressor [Escherichia coli BL21(DE3)] gi|254595445|gb|ACT74806.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli O157:H7 str. TW14359] gi|257756802|dbj|BAI28304.1| DNA-binding transcriptional repressor LexA of SOS regulon [Escherichia coli O26:H11 str. 11368] gi|257761984|dbj|BAI33481.1| DNA-binding transcriptional repressor LexA of SOS regulon [Escherichia coli O103:H2 str. 12009] gi|257767112|dbj|BAI38607.1| DNA-binding transcriptional repressor LexA of SOS regulon [Escherichia coli O111:H- str. 11128] gi|260451128|gb|ACX41550.1| SOS-response transcriptional repressor, LexA [Escherichia coli DH1] gi|281181109|dbj|BAI57439.1| SOS response regulator [Escherichia coli SE15] gi|281603472|gb|ADA76456.1| LexA repressor [Shigella flexneri 2002017] gi|284924137|emb|CBG37236.1| LexA repressor [Escherichia coli 042] gi|290765333|gb|ADD59294.1| LexA repressor [Escherichia coli O55:H7 str. CB9615] gi|291320801|gb|EFE60243.1| LexA repressor [Escherichia coli B088] gi|291429597|gb|EFF02611.1| LexA repressor [Escherichia coli FVEC1412] gi|291430266|gb|EFF03264.1| LexA repressor [Escherichia coli B185] gi|291472027|gb|EFF14509.1| LexA repressor [Escherichia coli B354] gi|294492359|gb|ADE91115.1| LexA repressor [Escherichia coli IHE3034] gi|298280545|gb|EFI22046.1| LexA repressor [Escherichia coli FVEC1302] gi|299882381|gb|EFI90592.1| repressor LexA [Escherichia coli MS 196-1] gi|300301078|gb|EFJ57463.1| repressor LexA [Escherichia coli MS 185-1] gi|300307787|gb|EFJ62307.1| repressor LexA [Escherichia coli MS 200-1] gi|300315722|gb|EFJ65506.1| repressor LexA [Escherichia coli MS 175-1] gi|300356611|gb|EFJ72481.1| repressor LexA [Escherichia coli MS 198-1] gi|300397996|gb|EFJ81534.1| repressor LexA [Escherichia coli MS 69-1] gi|300401801|gb|EFJ85339.1| repressor LexA [Escherichia coli MS 84-1] gi|300406730|gb|EFJ90268.1| repressor LexA [Escherichia coli MS 45-1] gi|300415454|gb|EFJ98764.1| repressor LexA [Escherichia coli MS 115-1] gi|300419470|gb|EFK02781.1| repressor LexA [Escherichia coli MS 182-1] gi|300453713|gb|EFK17333.1| repressor LexA [Escherichia coli MS 116-1] gi|300456837|gb|EFK20330.1| repressor LexA [Escherichia coli MS 21-1] gi|300462288|gb|EFK25781.1| repressor LexA [Escherichia coli MS 187-1] gi|300523915|gb|EFK44984.1| repressor LexA [Escherichia coli MS 119-7] gi|300529372|gb|EFK50434.1| repressor LexA [Escherichia coli MS 107-1] gi|300841941|gb|EFK69701.1| repressor LexA [Escherichia coli MS 124-1] gi|300843462|gb|EFK71222.1| repressor LexA [Escherichia coli MS 78-1] gi|301076652|gb|EFK91458.1| repressor LexA [Escherichia coli MS 146-1] gi|305850819|gb|EFM51275.1| LexA repressor [Escherichia coli NC101] gi|306907921|gb|EFN38422.1| transcriptional repressor, LexA family [Escherichia coli W] gi|307556188|gb|ADN48963.1| LexA repressor [Escherichia coli ABU 83972] gi|307629092|gb|ADN73396.1| LexA repressor [Escherichia coli UM146] gi|308120511|gb|EFO57773.1| repressor LexA [Escherichia coli MS 145-7] gi|309704455|emb|CBJ03804.1| LexA repressor [Escherichia coli ETEC H10407] gi|310331698|gb|EFP98954.1| lexA repressor [Escherichia coli 1827-70] gi|312289971|gb|EFR17858.1| lexA repressor [Escherichia coli 2362-75] gi|312948622|gb|ADR29449.1| LexA repressor [Escherichia coli O83:H1 str. NRG 857C] gi|313648760|gb|EFS13200.1| lexA repressor [Shigella flexneri 2a str. 2457T] gi|315063369|gb|ADT77696.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia coli W] gi|315138597|dbj|BAJ45756.1| LexA repressor [Escherichia coli DH1] gi|315254714|gb|EFU34682.1| repressor LexA [Escherichia coli MS 85-1] gi|315287864|gb|EFU47266.1| repressor LexA [Escherichia coli MS 110-3] gi|315291524|gb|EFU50884.1| repressor LexA [Escherichia coli MS 153-1] gi|315297516|gb|EFU56795.1| repressor LexA [Escherichia coli MS 16-3] gi|315617411|gb|EFU98017.1| lexA repressor [Escherichia coli 3431] gi|320174471|gb|EFW49611.1| SOS-response repressor and protease LexA [Shigella dysenteriae CDC 74-1112] gi|320179039|gb|EFW53998.1| SOS-response repressor and protease LexA [Shigella boydii ATCC 9905] gi|320187474|gb|EFW62162.1| SOS-response repressor and protease LexA [Shigella flexneri CDC 796-83] gi|320190854|gb|EFW65504.1| SOS-response repressor and protease LexA [Escherichia coli O157:H7 str. EC1212] gi|320193404|gb|EFW68041.1| SOS-response repressor and protease LexA [Escherichia coli WV_060327] gi|320200826|gb|EFW75412.1| SOS-response repressor and protease LexA [Escherichia coli EC4100B] gi|320638800|gb|EFX08446.1| LexA repressor [Escherichia coli O157:H7 str. G5101] gi|320644168|gb|EFX13233.1| LexA repressor [Escherichia coli O157:H- str. 493-89] gi|320649487|gb|EFX18011.1| LexA repressor [Escherichia coli O157:H- str. H 2687] gi|320654883|gb|EFX22844.1| LexA repressor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660731|gb|EFX28188.1| LexA repressor [Escherichia coli O55:H7 str. USDA 5905] gi|320665660|gb|EFX32697.1| LexA repressor [Escherichia coli O157:H7 str. LSU-61] gi|323155619|gb|EFZ41794.1| lexA repressor [Escherichia coli EPECa14] gi|323161403|gb|EFZ47310.1| lexA repressor [Escherichia coli E128010] gi|323164562|gb|EFZ50363.1| lexA repressor [Shigella sonnei 53G] gi|323177612|gb|EFZ63197.1| lexA repressor [Escherichia coli 1180] gi|323182147|gb|EFZ67557.1| lexA repressor [Escherichia coli 1357] gi|323190092|gb|EFZ75370.1| lexA repressor [Escherichia coli RN587/1] gi|323380568|gb|ADX52836.1| transcriptional repressor, LexA family [Escherichia coli KO11] gi|323935532|gb|EGB31863.1| LexA repressor [Escherichia coli E1520] gi|323946176|gb|EGB42210.1| LexA repressor [Escherichia coli H120] gi|323950413|gb|EGB46294.1| LexA repressor [Escherichia coli H252] gi|323954495|gb|EGB50279.1| LexA repressor [Escherichia coli H263] gi|323960450|gb|EGB56083.1| LexA repressor [Escherichia coli H489] gi|323965705|gb|EGB61157.1| LexA repressor [Escherichia coli M863] gi|323969823|gb|EGB65104.1| LexA repressor [Escherichia coli TA007] gi|323975326|gb|EGB70429.1| LexA repressor [Escherichia coli TW10509] gi|324007800|gb|EGB77019.1| repressor LexA [Escherichia coli MS 57-2] gi|324014293|gb|EGB83512.1| repressor LexA [Escherichia coli MS 60-1] gi|324017114|gb|EGB86333.1| repressor LexA [Escherichia coli MS 117-3] gi|324118615|gb|EGC12507.1| LexA repressor [Escherichia coli E1167] gi|326340544|gb|EGD64342.1| SOS-response repressor and protease LexA [Escherichia coli O157:H7 str. 1125] gi|326346515|gb|EGD70249.1| SOS-response repressor and protease LexA [Escherichia coli O157:H7 str. 1044] gi|327250387|gb|EGE62100.1| lexA repressor [Escherichia coli STEC_7v] gi|330908364|gb|EGH36883.1| SOS-response repressor and protease LexA [Escherichia coli AA86] gi|331035758|gb|EGI07996.1| repressor LexA [Escherichia coli H736] gi|331041283|gb|EGI13436.1| repressor LexA [Escherichia coli M605] gi|331046217|gb|EGI18307.1| repressor LexA [Escherichia coli M718] gi|331051653|gb|EGI23692.1| repressor LexA [Escherichia coli TA206] gi|331056764|gb|EGI28758.1| repressor LexA [Escherichia coli TA143] gi|331061819|gb|EGI33744.1| repressor LexA [Escherichia coli TA271] gi|331067301|gb|EGI38708.1| repressor LexA [Escherichia coli TA280] gi|331071635|gb|EGI42971.1| repressor LexA [Escherichia coli H591] gi|331076987|gb|EGI48204.1| repressor LexA [Escherichia coli H299] gi|332083535|gb|EGI88755.1| lexA repressor [Shigella boydii 5216-82] gi|332087758|gb|EGI92884.1| lexA repressor [Shigella boydii 3594-74] gi|332103115|gb|EGJ06461.1| regulator for SOS(lexA) regulon [Shigella sp. D9] gi|332346042|gb|AEE59376.1| repressor protein LexA [Escherichia coli UMNK88] gi|332751987|gb|EGJ82380.1| lexA repressor [Shigella flexneri 4343-70] gi|332752157|gb|EGJ82549.1| lexA repressor [Shigella flexneri K-671] gi|332753325|gb|EGJ83706.1| lexA repressor [Shigella flexneri 2747-71] gi|332764750|gb|EGJ94979.1| lexA repressor [Shigella flexneri 2930-71] gi|332998110|gb|EGK17714.1| lexA repressor [Shigella flexneri VA-6] gi|332999040|gb|EGK18629.1| lexA repressor [Shigella flexneri K-272] gi|332999140|gb|EGK18727.1| lexA repressor [Shigella flexneri K-218] gi|333014286|gb|EGK33642.1| lexA repressor [Shigella flexneri K-304] Length = 202 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|297566304|ref|YP_003685276.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850753|gb|ADH63768.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 246 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 67/216 (31%), Gaps = 26/216 (12%) Query: 13 IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE--SIFKILAATNETI 69 ID+ L + + A K G+ ++ + +R W T+ ++ ++ A + Sbjct: 25 IDQAIREQGLRSYNEFADKHGIGRSTLSNLRRGRQSPTGSWMKTDLKTLERLALALGRPL 84 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L++ + + K + P G N Sbjct: 85 TDLIERYYE------SENKHELIRPKVPLVGWVGAGPGQLTEENGI----------YVEP 128 Query: 130 IYAIQTQDTRHKTQDTSMLPL---YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 A + S GDI++++ + ++ + + G + K+L Sbjct: 129 ELARGRNLVAFRVFGDSGCAGRFPICHGDIILVDQSFNGRPNWPVVAQLKDGSYICKLLK 188 Query: 187 SRRGRSIDLMSLNC--CYPVDTVEMSDI-EWIARIL 219 R S L+S N + + ++ I ++ Sbjct: 189 VERTGSY-LVSANPLASNGPTAIPIEEVDRIIGPVV 223 >gi|322514107|ref|ZP_08067177.1| LexA repressor [Actinobacillus ureae ATCC 25976] gi|322120037|gb|EFX92013.1| LexA repressor [Actinobacillus ureae ATCC 25976] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 61/218 (27%), Gaps = 33/218 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I++ + E + P+ +AR+ G + E + + Sbjct: 23 QQEIFDFVKHHIETTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 67 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T+ + + G G + E Sbjct: 68 K---------GYIEMLSGTSRGIRILVNNETEEAANDDDLPLIGKVAAGTPIMAIEHVES 118 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG D K SM + GD+L ++ G ++ + ++ Sbjct: 119 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLTVHKTNFARNGQVVVARVD-DEVTV 177 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N V+ +IE IA Sbjct: 178 KRLEKK-GDLIYLHPENDELEPIIVDPRIEYIEIEGIA 214 >gi|290476966|ref|YP_003469877.1| transcriptional repressor for SOS response (signal peptidase of LexA family) [Xenorhabdus bovienii SS-2004] gi|289176310|emb|CBJ83115.1| transcriptional repressor for SOS response (signal peptidase of LexA family) [Xenorhabdus bovienii SS-2004] Length = 204 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 64/217 (29%), Gaps = 38/217 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + ++++ + + + P + +A + G R P+ Sbjct: 1 MKALTARQQQVYNLVRDHISQTGMPPTRAEIAARLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA L G+ G G G Sbjct: 44 EEHLKALARKGV-------------IEIISGASRGLRLLLEEEGAAGLPLIGRVAAGEPL 90 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + D + SM + GD+L ++ V+ G ++ + Sbjct: 91 LAQEHIESHYKVDPALFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVHNGQIIVAR 150 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K + G I+L++ N + V++ + Sbjct: 151 I-EDEVTVKRF-KQVGNKIELIAENPEFEPIVVDLCE 185 >gi|260551416|ref|ZP_05825616.1| merops peptidase family S24 [Acinetobacter sp. RUH2624] gi|260405579|gb|EEW99071.1| merops peptidase family S24 [Acinetobacter sp. RUH2624] Length = 240 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 68/212 (32%), Gaps = 19/212 (8%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 LT +GL++ +G+ + + + + P+ +++ K+ T +LL Sbjct: 28 LTVTGLSKLSGVPQPTLFRWESGQFQA----PTIKTVEKLAKWCGLTTEELLYKDIEKIL 83 Query: 82 TTEKKEKEIPLLYFPPSGSGG------FFDSGVFPTGNKWNTVGV---PEIRSPHNGIYA 132 + + + L + G+ + V E+ + Sbjct: 84 KNKNSDSNLKLDNNVDLNNKINIEGDLVPVISWVAAGSFTDVQTVLKDTEVIEWLPPMKK 143 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTGDIVAKVLISR 188 SM P + GD + +N V ++ + K LI Sbjct: 144 AGKNGYGLIVTGYSMYPKFEPGDRIYVNPDYPVFDLKTNDLVIVACEGESEATFKKLIIE 203 Query: 189 RGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 L LN +P +++++ + + +++ Sbjct: 204 GNEKY-LEPLNSKWPEQIIKLTEGCKLVGKVV 234 >gi|210612747|ref|ZP_03289462.1| hypothetical protein CLONEX_01664 [Clostridium nexile DSM 1787] gi|210151440|gb|EEA82448.1| hypothetical protein CLONEX_01664 [Clostridium nexile DSM 1787] Length = 205 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 59/221 (26%), Gaps = 37/221 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59 +I E I R P+ + L TS + + G R P+ Sbjct: 9 KQLEILEYIKSEILRIGYPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I+ T + + P + N N Sbjct: 69 EIIDDTFNLTRREMVN--------------------VPIVGQVAAGEPILAEQNITNYFP 108 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + + + SM+ GD++++ S + G+ ++ Sbjct: 109 IPIE-------FMPNNETFLLTVKGESMINAGILDGDMVLVESTSVASNGEMVVALVD-D 160 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L N V S++E + +++ Sbjct: 161 SATVKTFYKEE-GIYRLQPENDTMEPIIV--SEVEILGKVI 198 >gi|157148065|ref|YP_001455384.1| LexA repressor [Citrobacter koseri ATCC BAA-895] gi|166224566|sp|A8AN85|LEXA_CITK8 RecName: Full=LexA repressor gi|157085270|gb|ABV14948.1| hypothetical protein CKO_03872 [Citrobacter koseri ATCC BAA-895] Length = 202 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLLDEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRE 183 >gi|330880639|gb|EGH14788.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4] Length = 202 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 45 --KHIMALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 98 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + + L+ N Y V Sbjct: 154 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 187 >gi|170721919|ref|YP_001749607.1| peptidase S24/S26 domain-containing protein [Pseudomonas putida W619] gi|169759922|gb|ACA73238.1| peptidase S24 and S26 domain protein [Pseudomonas putida W619] Length = 152 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 4/117 (3%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165 P G E + I+ ++ K + SM GDI+I++ + Sbjct: 32 HVPAGFPSPAADHLEGHISLDEIFDLRAPHVYLVKVEGDSMQGAGIYSGDIVIVDRGREA 91 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 GD ++ + V K L R + L S N YP + D I ++ S Sbjct: 92 EHGDIVIAAVNC-EPVCKRLHRRDA-VVILKSENPAYPPRYIMEGDELVIWGVVRYS 146 >gi|218551355|ref|YP_002385147.1| LexA repressor [Escherichia fergusonii ATCC 35469] gi|226736102|sp|B7LL15|LEXA_ESCF3 RecName: Full=LexA repressor gi|218358897|emb|CAQ91556.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia fergusonii ATCC 35469] gi|324112319|gb|EGC06297.1| LexA repressor [Escherichia fergusonii B253] gi|325499623|gb|EGC97482.1| LexA repressor [Escherichia fergusonii ECD227] Length = 202 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTVRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|71736633|ref|YP_274867.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557186|gb|AAZ36397.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A] gi|320324029|gb|EFW80112.1| LexA repressor [Pseudomonas syringae pv. glycinea str. B076] gi|320329027|gb|EFW85026.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4] Length = 205 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 4 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 48 --KHIMALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + + L+ N Y V Sbjct: 157 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 190 >gi|302335734|ref|YP_003800941.1| SOS-response transcriptional repressor, LexA [Olsenella uli DSM 7084] gi|301319574|gb|ADK68061.1| SOS-response transcriptional repressor, LexA [Olsenella uli DSM 7084] Length = 220 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 55/219 (25%), Gaps = 22/219 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I+E I H PS + GL P++ + + + + I Sbjct: 10 QAQIYEFICGYTGEHGYPPSVREIGAAVGLASPSTVHMHLKV----------LQELGYIK 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + + D + + G G E Sbjct: 60 RDSKKPRTIEVVSEGGDATPPSPSTPLATVEEDASANVISLPLVGRVAAGTPILAEQNVE 119 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + SM+ GD +++ + + G+ ++ Sbjct: 120 ETLTLPTSIVGDSSSFVLRVRGQSMINAGIFDGDYIVVKEQHEAHDGEIVVALID-DSAT 178 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218 K R + L N V + + R+ Sbjct: 179 VKTFYRER-GRVRLQPENDTMNPIYV----VNPTILGRV 212 >gi|145306753|ref|YP_001144417.1| peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense MSR-1] gi|144901519|emb|CAM78241.1| Peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense MSR-1] Length = 192 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 8/162 (4%) Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTV 118 + D + F P+ S + P G + + Sbjct: 25 CRSLAIGAIVPSMFSRRDNAPLPPGTRLASSRAFVPADGAAPIYSALVPAGFPSPADDHL 84 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 H + + SM GD+L+++ ++Q GD ++ Sbjct: 85 E--GKLDLHELMVKRPAATFFCRADGDSMTGAGIHSGDLLVVDRSVQPQDGDIVVATLD- 141 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G + K L + +L N YP + D I ++ Sbjct: 142 GGLTVKTL-RKTTEGWELAPANPDYPSFPLNQEDGVQIWGVV 182 >gi|37528202|ref|NP_931547.1| LexA repressor [Photorhabdus luminescens subsp. laumondii TTO1] gi|44888094|sp|Q7MZB8|LEXA_PHOLL RecName: Full=LexA repressor gi|36787639|emb|CAE16746.1| LexA repressor [Photorhabdus luminescens subsp. laumondii TTO1] Length = 201 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 3/111 (2%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 G G G E + + D + SM + GD+L ++ Sbjct: 74 GLPLIGRVAAGEPLLAQEHIESHYQVDPALFKPSADFLLRVSGMSMKDVGIMDGDLLAVH 133 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 V G ++ + ++ K + G ++L++ N + V++ + Sbjct: 134 KTQNVRNGQIIVARI-EDEVTVKRF-KQTGNKVELLAENPEFKPIEVDLRE 182 >gi|217970698|ref|YP_002355932.1| LexA repressor [Thauera sp. MZ1T] gi|217508025|gb|ACK55036.1| SOS-response transcriptional repressor, LexA [Thauera sp. MZ1T] Length = 202 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 5/178 (2%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R +E R P+ + + + + +E + Sbjct: 12 QQEILDFIRSTVESEGRPPTRAEVCTAFGFRSPNAAETHLRALAAKGAILLEEGRARGIR 71 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + G G G+ E R + D + + SM Sbjct: 72 LAEAL--GLPLVGRVAAGSPILAAEHVEARYQLDPALFSPRADYLLRVRGMSMRDAGILD 129 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD++ ++ + G ++ + D+ K L + ++L+ N Y V+ Sbjct: 130 GDLIAVHRNSEARNGQIVVARVD-DDVTVKTLQRKGP-VVELLPANPDYTPIVVDTRR 185 >gi|220930677|ref|YP_002507586.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220001005|gb|ACL77606.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 281 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 67/221 (30%), Gaps = 16/221 (7%) Query: 7 KKIWEAIDRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K I A D E + LA G+ + K + E + K L Sbjct: 67 KSILSASDLYKEFIEQKVPIEKLADNIGISADTLFKILK--SEEGATEADYYRLCKWLGY 124 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + E + + + + + + P G F N Sbjct: 125 SEEKAEEFYLRNSPLTNKSFRFTQNLDFIPVPVLGLIRAGQPA-FAEENNEGYYPTDRQF 183 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + Y + + SM +++G ++++ + G+ ++ D K Sbjct: 184 ISDDHEY------FYLRIKGDSMDKEFKEGSLVLVQIQSTLESGEIGVVLINGFDATVKK 237 Query: 185 LISRRGRSIDLMSL--NCCYPVDTVE--MSDIEWIARILWA 221 + R I LM N + T + +I+ + +++ A Sbjct: 238 VFIR-DNLITLMPQSNNEDHQPQTYDTVKEEIKILGKVVLA 277 >gi|91786898|ref|YP_547850.1| putative phage repressor [Polaromonas sp. JS666] gi|91696123|gb|ABE42952.1| putative phage repressor [Polaromonas sp. JS666] Length = 284 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 50/206 (24%), Gaps = 13/206 (6%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK-----ILAATNETICQLLDLPFSDG 80 +A G+ + +R + E + K + L Sbjct: 77 DVAATVGVHRNTIWNIERG--DSLPDAFELEVLAKEYNTTPAHLLGDERQGKARLTAMVP 134 Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140 + + + + + ++ A Sbjct: 135 NSVHAVQVDAFIYVPLFDLKSSAGKDAFNDIESVIAMRPFDARFIRYDLGIAHNDIAMSM 194 Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200 SM P D ++ + + + + G ++ K L G+ + + S N Sbjct: 195 -VVGVSMEPWLHSKDAVLTDLQDHDALTEGIHVVRLDGALLVKKLQRLPGKILRVSSYNQ 253 Query: 201 CYPVDTV-----EMSDIEWIARILWA 221 Y + D + R+ WA Sbjct: 254 AYEPFDIQGHEDPDRDFSVLGRVRWA 279 >gi|147670021|ref|YP_001214839.1| SOS-response transcriptional repressor, LexA [Dehalococcoides sp. BAV1] gi|146270969|gb|ABQ17961.1| SOS-response transcriptional repressor, LexA [Dehalococcoides sp. BAV1] Length = 214 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 60/213 (28%), Gaps = 23/213 (10%) Query: 11 EAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I R R+ PS + + TS + + + KI + Sbjct: 14 DFIARFRRRYGYPPSIRDIVSGCNISSTSVVDY------------NLKILQKIGLIRRQA 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 T E + + +S F ++ V E + Sbjct: 62 EISRGIELVGTEETNEGRISIPVIGQIAAGTPIPVPESDSFAVVTSDESIEVTEDLTRGR 121 Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLI 186 + + SM L GD++I+ V+ G+ + ++ K + Sbjct: 122 ------ENIYALRVKGVSMIEDLINDGDLVIMQHTQTVDNGETAAVWLKDQKEVTLKRIY 175 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L N P + ++E R++ Sbjct: 176 -MEPGRVRLQPANRTMPPIYTKPDNVEIQGRVI 207 >gi|300088777|ref|YP_003759299.1| LexA family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528510|gb|ADJ26978.1| transcriptional repressor, LexA family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 207 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 11/196 (5%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 L + RF + + P+ + + +I + + ++ G + K + Sbjct: 12 LQRKTLEAICRFV-DAKGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGI 70 Query: 93 -----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 + G+ G + Q + SM Sbjct: 71 AVARRPSEMAASLVSVPVVGMVAAGRPILAEENITGQVLVESDVVRSGQHFALRAVGDSM 130 Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 + GD++I+ GD ++ + K L + I+L+ N Sbjct: 131 VGAGINDGDLIIVRQQPIAEDGDIVVALFN-DEATVKRL-RIKDELIELVPENPEVRKIR 188 Query: 207 V-EMSDIEWIARIL-W 220 + D+ + +++ W Sbjct: 189 IRPEDDLRVLGKVVGW 204 >gi|260842739|ref|YP_003220517.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|257757886|dbj|BAI29383.1| probable phage repressor protein CI [Escherichia coli O103:H2 str. 12009] Length = 215 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 65/210 (30%), Gaps = 17/210 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ-----LLDLPFSD 79 + LA G+D + ++ + G+ + + +++ I + I Sbjct: 4 ADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGVDIADLFTSAHKSNAVYK 59 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136 E + + +G+ G+ + + E R+ + Sbjct: 60 NSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P GD++ ++ +I GD + + I K L + ++ Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178 Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223 S N Y + ++L SQ Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207 >gi|148653141|ref|YP_001280234.1| putative prophage repressor [Psychrobacter sp. PRwf-1] gi|148572225|gb|ABQ94284.1| putative prophage repressor [Psychrobacter sp. PRwf-1] Length = 219 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 63/216 (29%), Gaps = 27/216 (12%) Query: 14 DRMA---ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL----AATN 66 DR+ + L L + G+ + + + + + K L Sbjct: 8 DRLIYAKDEKGLKQVDLVKATGVSKGTVSNWISGKTTPDD-TVALGDLAKALGVSVDWLV 66 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + P+L + +G + + + Sbjct: 67 TGRESNNHSFSNVRPVDKHEIRMAPVLNYVQAGEFCEYFDDAIA-------DRFEPVSTK 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVL 185 H + SM+P + +++++N +Q + GD ++ K + K Sbjct: 120 H------PKNSYWVELNGLSMIPDFYPEELVLINPDMQPSPGDYVVAKKAGENAVTFKKW 173 Query: 186 ISRR--GRSI---DLMSLNCCYPVDTVEMSDIEWIA 216 R + +L+ LN +P+ + Sbjct: 174 RPRGFDDDGVEYCELVPLNPDFPIIDSRHTPFTICG 209 >gi|110833870|ref|YP_692729.1| LexA repressor [Alcanivorax borkumensis SK2] gi|123050584|sp|Q0VQU1|LEXA_ALCBS RecName: Full=LexA repressor gi|110646981|emb|CAL16457.1| LexA repressor [Alcanivorax borkumensis SK2] Length = 204 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 57/214 (26%), Gaps = 33/214 (15%) Query: 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++ + I + + + T + +A G + R + K+ Sbjct: 9 QQQVLDCIRECLKDNGMAPTRAEIADIMGFQS-------KNAASDHLRALERKGYIKL-- 59 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + I LL G G G + E Sbjct: 60 -------------------HSDRSRGIQLLDHAYWGEEELPVVGKVAAGIPIEAIENVER 100 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P Q K Q SM+ GD++ + + G+ ++ + ++ Sbjct: 101 TVPVPQGLFKQRPTYLLKVQGDSMVDAGIFDGDLIAVRKSNVARSGEIVVARID-EEVTV 159 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 K L S L+ N Y V + Sbjct: 160 KTL-KLNKSSATLLPANEAYEPIKVPADQLIIEG 192 >gi|56475434|ref|YP_157023.1| putative bacteriophage-related transcriptional repressor [Aromatoleum aromaticum EbN1] gi|56311477|emb|CAI06122.1| putative bacteriophage-related transcriptional repressor [Aromatoleum aromaticum EbN1] Length = 229 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 69/219 (31%), Gaps = 22/219 (10%) Query: 14 DRMAERHNLTP--SGLARKAGL--DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +R+ R P AR+ GL + + + R S E+ N + Sbjct: 11 ERLKARFGAVPNREKFAREIGLHGGGSMIYQHIKGI-----RPISREAAVAYAKGFNCRL 65 Query: 70 CQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVG 119 + + S T + E P + P G G + + + Sbjct: 66 EEISPRIALEIQQATSVLSPTPDRPPESPNICAGPDRKGKVPLISWVRAGEFAHAADLLP 125 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 V E +Q + Q SM P + G I+++ + GD ++ + + Sbjct: 126 VGEAYEWVETGVNVQPHTFALRVQGDSMEPEFVAGTIIVIEPHMVAEPGDYVIARNGDNE 185 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ + L LN YP+ + + I + Sbjct: 186 ATFKQLVRDGAD-LYLKPLNPRYPIKPLGAT--AIIGVV 221 >gi|162149420|ref|YP_001603881.1| protease [Gluconacetobacter diazotrophicus PAl 5] gi|161787997|emb|CAP57601.1| putative protease [Gluconacetobacter diazotrophicus PAl 5] Length = 254 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 74/244 (30%), Gaps = 27/244 (11%) Query: 1 MTSFSHKKIWEAIDRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ + + A+ R+ + NL LA G + + G + +++ Sbjct: 13 MSILTPSR--YALLRLIAGAQSNLKAESLA--LGRNHAYLQQYIHKGTPQKLPEDVRDAL 68 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----------SGV 108 + A + +D + + P + G Sbjct: 69 ARRFAVSPNVFRDDMDPNWEPLDPPPFPPRPRRQRPRPSALEPARQGRHSFAGERGGPGA 128 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 P+ P + + SM P Y+ G+ +++++A Sbjct: 129 LPSNMAVEDGPQPVDHWFLPRRFLGAFTDSPEALVVLRVAGDSMEPDYQAGERVLVDTAH 188 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGR----SIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + +V K L G S+ +MS+N YP T + ++ R++ Sbjct: 189 RTPSPPGVYVLWDGFGLVLKRLEIVYGSEDPVSVQIMSINPGYPTYTRALDEVHINGRVV 248 Query: 220 --WA 221 W Sbjct: 249 GKWV 252 >gi|319782474|ref|YP_004141950.1| peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168362|gb|ADV11900.1| Peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 234 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 58/222 (26%), Gaps = 17/222 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ AI + ++ L +A D + + P TE++ K A Sbjct: 12 KVGAAIRKARKQRGLVMRHIAEHNDTDVAAVGNWETGRN-----LPKTENLLKTAAFLRV 66 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEI 123 L + P + + + P Sbjct: 67 DPVALGQGQVVFLDDAGPVADAEIVTDAGPLPASSMDIEVLGAAVGGDDGDFTFNGEPAG 126 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD---- 179 + SM+P Y GD++ GD ++I+ + Sbjct: 127 YVQRPPGVRNLPKVFALHVLSDSMVPRYEPGDLIYCG-GRDAVPGDHVVIETFPEENERN 185 Query: 180 --IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ R + + N T I+ + R++ Sbjct: 186 GKAFIKKLVKRTAGELVVEQYNP-PKTLTFNRYAIKHVWRVI 226 >gi|328944041|ref|ZP_08241506.1| LexA repressor [Atopobium vaginae DSM 15829] gi|327492010|gb|EGF23784.1| LexA repressor [Atopobium vaginae DSM 15829] Length = 214 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 60/229 (26%), Gaps = 35/229 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR-----N 50 M ++I+ + H PS + GL P++ + + Sbjct: 1 MRKLGKRQEQIYSYLCSYVSEHGYPPSVREIGEAVGLASPSTVHMHLHALQDLGYIHRDP 60 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + P + K++ E + + + + P + Sbjct: 61 KKPRALVLPKLVQDEGEQH-------------SVENDNVELNVTILPVVGRVAAGVPILA 107 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 N + + VP S + K Q SM+ GD +++ G+ Sbjct: 108 EQNIEDRLAVPTSISSDSSS-------FILKVQGESMINAGIFDGDYVVVKEQHDARNGE 160 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ + K I L N + I ++ Sbjct: 161 IVIAMID-NECTVKRFFKES-SYIRLQPENDTMKPIIAKHP--TIIGKV 205 >gi|51245882|ref|YP_065766.1| repressor protein [Desulfotalea psychrophila LSv54] gi|50876919|emb|CAG36759.1| related to repressor protein [Desulfotalea psychrophila LSv54] Length = 236 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 32/238 (13%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGL-ARKAGLDPTSFNKSKRFGIEGRNRWPST------ 55 A+ + S L A+ G+ + K+ +G Sbjct: 1 MLKQTTFSAALVYCLSKKGYGASSLCAKSTGISSGYLTELKKAKKKGSEEQRRLLALYFE 60 Query: 56 ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 E I T ++L + T K K+IPLL + + Sbjct: 61 MSYEDFLAAGEQILAGKNPTELISTKILKKRVKNLGITHKSIKKIPLLSWTEAAEWSTTL 120 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + V I K SM P + GDI+I++ I Sbjct: 121 KNTLSA-TINEWITV---------ICKAGKTAFALKVMCQSMEPEFCPGDIIIVDPEIAP 170 Query: 166 NCGDRLLIKPRTG----DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ + + K G + L+SLN Y V ++ + ++ Sbjct: 171 ETGRFVIAQLDGQSSGSEATLKRFERDGGD-LYLVSLNDKYGDKNVTDTNFKICGCVV 227 >gi|293404030|ref|ZP_06648024.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298379809|ref|ZP_06989414.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|291428616|gb|EFF01641.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298279507|gb|EFI21015.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|323972432|gb|EGB67639.1| peptidase S24 [Escherichia coli TA007] Length = 215 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 17/210 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD-----LPFSD 79 + LA G+D + ++ + G+ + + +++ I + I L Sbjct: 4 ADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGVDIADLFTSALKSNTVYK 59 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136 E + + +G+ G+ + + E R+ + Sbjct: 60 NSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P GD++ ++ +I GD + + I K L + ++ Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178 Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223 S N Y + ++L SQ Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207 >gi|227811308|ref|NP_777349.3| hypothetical protein IN93_gp32 [Thermus phage IN93] gi|227215237|dbj|BAC55311.3| unnamed protein product [Thermus phage IN93] Length = 218 Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 23/216 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 EAI ++ LT L L + + + + E +L+A Sbjct: 9 GEAIKARRKQLGLTQEDLEAATNDILSQKTISDLEVGRV--HPLNLGAEKFLALLSALRW 66 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T + + D + E G+ PE S Sbjct: 67 TPEEFAEATGLDVPLVYRPSGEPREDVVWVPV-----------VGSGVAGRPWPESGSMP 115 Query: 128 NGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVA 182 ++ + + SM R GD+++++ + G ++ I Sbjct: 116 VPRPLVRPGSVLIQVEGDSMDTGEEDGLRDGDLVLVDQNLKDLREGRVYAVEIIGDGIAI 175 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K R I L+S N P +E ++ I + Sbjct: 176 KRARKLGNRWI-LISDNPKGP--LLEPEEVRVIGEV 208 >gi|262273578|ref|ZP_06051392.1| SOS-response repressor and protease LexA [Grimontia hollisae CIP 101886] gi|262222556|gb|EEY73867.1| SOS-response repressor and protease LexA [Grimontia hollisae CIP 101886] Length = 207 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 69/225 (30%), Gaps = 37/225 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R+ + E Sbjct: 1 MKPLTARQQQVFDLIKAKIDDTGMPPTRAEIAKELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + + G G G Sbjct: 46 HLKALARK-----------GVLEIVPGASRGIRLLVDTEAAKEEEGLPLIGRVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E+ + D + SM + GD+L ++ +V G ++ + Sbjct: 95 AQEHVEMYYQVDPNLFKPNADFLLRVSGMSMKDIGILDGDLLAVHKTQEVRNGQVVVAR- 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIA 216 D+ K L + + + L + N + V++S IE IA Sbjct: 154 VEDDVTVKRLERKGNQ-VLLHAENEEFAPIVVDLSQQPFTIEGIA 197 >gi|15887791|ref|NP_353472.1| putative phage repressor [Agrobacterium tumefaciens str. C58] gi|15155365|gb|AAK86257.1| putative phage repressor [Agrobacterium tumefaciens str. C58] Length = 231 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 64/226 (28%), Gaps = 21/226 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KKI +AI R L LA G+ + +R + E + I Sbjct: 7 RKKIGQAIRTARIRRGLVMRDLAEAGGVSTGAVGNWERGAN-----AIAMEHLQAISQKL 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----P 121 L + E + F P+ +G + + Sbjct: 62 RIDPVALSNGSLRYLDEEEALADAEQVTDFGPAPTGPMDVEVLGVAVGGDDGDFTLNGEV 121 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-- 179 A + SM+P Y G+++ + + GD ++I+ + Sbjct: 122 SGYVRRPPGIAHLRKVFALHVLSDSMIPRYDPGELIYVG-GREAVAGDHVVIEMFPDEGA 180 Query: 180 ----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219 K L R +I N ++ I+ + RI+ Sbjct: 181 TVGKAYVKKLKGRTKGAIVCEQYNP---PKELQFDQYAIKNMWRII 223 >gi|152996139|ref|YP_001340974.1| SOS-response transcriptional repressor LexA [Marinomonas sp. MWYL1] gi|189046540|sp|A6VX60|LEXA_MARMS RecName: Full=LexA repressor gi|150837063|gb|ABR71039.1| SOS-response transcriptional repressor, LexA [Marinomonas sp. MWYL1] Length = 207 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 53/215 (24%), Gaps = 31/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + E I P + +AR+ G + + E Sbjct: 1 MIKLTKRQSDVLETIREFISETGFPPTRAEIARRLGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K L + L G G G Sbjct: 45 EHLKALCKKGAIEMLSGASRGIRLVDRASNDDPTDNL--------GLPVIGKVAAGYPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 D TSM + +GD+L ++ V G ++ + Sbjct: 97 AQENIASHVNIPANMFSPQADYFLSVSGTSMKDIGIMEGDLLAVHKTTTVRNGQIVVARI 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K ++G + L+ N + V++ Sbjct: 157 -GDEVTVKRF-EQKGSIVRLIPENEEFNDIIVDLE 189 >gi|238918201|ref|YP_002931715.1| LexA repressor [Edwardsiella ictaluri 93-146] gi|259494473|sp|C5B718|LEXA_EDWI9 RecName: Full=LexA repressor gi|238867769|gb|ACR67480.1| repressor LexA, putative [Edwardsiella ictaluri 93-146] Length = 202 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I E+ + P + +A++ G R P+ Sbjct: 1 MKALTARQQQVYDLIRDHIEQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + E + G G G Sbjct: 43 -------------AEEHLKALQRKGVIEIVSGASRGIRLLMEDETGLPLVGQVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGFYQIDPSLFKPGADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ NC + V++ + Sbjct: 150 -EDEVTVKRLKKQ-GNMVQLLPENCDFQPIVVDLRE 183 >gi|104782433|ref|YP_608931.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95111420|emb|CAK16140.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 229 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 12/218 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E + R HNL LA + G+ R R P+ E++ + L Sbjct: 13 ENWIEFLSRYKREHNLKQYQLAERLGMTQGGLGHWLRGT-----RRPTLETVNEKLEQLG 67 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-S 125 + + ++ + + +PE + Sbjct: 68 LVYLEARVMVVERDIMAREERGVYAVERPLSVNAMRHASFRFPVLSWADLQGALPESSET 127 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 Y ++ SM +G ++++++ I+V G ++ + V Sbjct: 128 QELTGYMPAGNAFWLPVENDSMNAASGRSLPQGVLVLVDAGIEVAPGRLVVARQPGKPAV 187 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + LI G+ L LN YP + E++ ++ Sbjct: 188 LRELIEEGGQR-MLRPLNTLYPT-VLCEEGCEFLGVVV 223 >gi|225026221|ref|ZP_03715413.1| hypothetical protein EUBHAL_00462 [Eubacterium hallii DSM 3353] gi|224956472|gb|EEG37681.1| hypothetical protein EUBHAL_00462 [Eubacterium hallii DSM 3353] Length = 243 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 27/232 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKA---GLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAA 64 E + ++ + S L G+ T+ +K + E T + ++L Sbjct: 5 GEILAENRKKKGYSQSDLVDLLSQEGIQVTTKAISKWETNAREPALHVFLT--LCQLLDI 62 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLY----------------FPPSGSGGFFDSGV 108 + + P++ ++ + + + P Sbjct: 63 EDIYESFFGENPYNIMSGLNEEGRNKLIEFADILKASKKFSPLSAKIIPFHHPVEITWEP 122 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G N + + G A + D + SM PLY GD+ + + G Sbjct: 123 VSAGTG-NYLEDSVKETYDVGHLAPEQTDFGVRISGDSMEPLYHTGDVAWIQKIDSLANG 181 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWIARIL 219 + + G+ K L + L+SLN Y +E + +++ Sbjct: 182 EIGI-FYLNGNTYIKELHDEPDG-VYLISLNQKYRPIQVLESDSFKIFGKVI 231 >gi|240141185|ref|YP_002965665.1| putative phage repressor [Methylobacterium extorquens AM1] gi|240011162|gb|ACS42388.1| putative phage repressor [Methylobacterium extorquens AM1] Length = 212 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 57/213 (26%), Gaps = 30/213 (14%) Query: 31 AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90 G+ F K +R R + + + T + Sbjct: 1 MGVSRGQFIKLERGERGLTERTIGLAARAFSVPPSRVIGEGSSAEGERHTTTPPLPQPNA 60 Query: 91 PLLYFPPSGSGGFFD----------------SGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 + + F G + P A + Sbjct: 61 AIPDQAEAVDPSVFRGPRNVPVYGTGSGGDGGDFSFNGQLIDHAPRPPGI-------ANR 113 Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR------TGDIVAKVLISR 188 S+ P Y G + ++ + D ++++ R G K L+SR Sbjct: 114 KDVYVVYLVGDSVAPAYEDGSPIYVDPHRRPAPRDYVVVELRGEREGEPGPAFVKRLVSR 173 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220 G + L N ++ ++ +D+ + R++ W Sbjct: 174 GGGKLRLEQHNPPKQLEPIDEADVVRVHRVIPW 206 >gi|6729334|dbj|BAA89781.1| repressor protein [Enterobacteria phage VT2-Sakai] Length = 191 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 50/197 (25%), Gaps = 19/197 (9%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + R +R PS I + Sbjct: 1 MTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFNHDGTFSPVGEYSSAPVKKQ 55 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML---- 148 +P P + + S + + SM Sbjct: 56 YEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA---SDSAFWLEVEGNSMTAPTG 110 Query: 149 --PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 P + G +++++ V GD + + + K LI G+ L LN YP+ Sbjct: 111 SKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIP 169 Query: 207 VEMSDIEWIARILWASQ 223 + +++ ASQ Sbjct: 170 CN-ESCSVVGKVI-ASQ 184 >gi|194432334|ref|ZP_03064622.1| LexA repressor [Shigella dysenteriae 1012] gi|194419537|gb|EDX35618.1| LexA repressor [Shigella dysenteriae 1012] gi|332084337|gb|EGI89540.1| lexA repressor [Shigella dysenteriae 155-74] Length = 202 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 60/216 (27%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVAPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|330987826|gb|EGH85929.1| repressor protein cI [Pseudomonas syringae pv. lachrymans str. M301315] Length = 250 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 38/238 (15%) Query: 11 EAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-------------NRWP 53 A+ + + LT A G++ SF+ Sbjct: 15 AALKAIFMEKRKALGLTQEKAAEALGMNQGSFSHYLNGRNALNTPFAVQVAHLLQVPVEA 74 Query: 54 STESIFKILAAT----------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + + K++ + + + + PL+ + +G+ Sbjct: 75 FSPRLAKLIHMMTKAVSGEGLAEKHQGEREGSNVEPVTQPWRAPRRYPLISWVAAGARAE 134 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 +GVFP + + E ++ S P + +G +++ Sbjct: 135 SPAGVFPASS-EEYIASTENAGEAGYWLEVKGASM-----TASTNPSFPEGTRILVQPEG 188 Query: 164 -QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + G + + G+ K + L LN + TV M D I R++ Sbjct: 189 FDLVNGKFYIAQHVDGETTFKQYV-HDAGWEYLAPLNPAF--RTVNMDDSWVLIGRVI 243 >gi|146299728|ref|YP_001194319.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154146|gb|ABQ05000.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 257 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 16/216 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + +H ++ LA + + K + E + + KI + +I Sbjct: 6 DNIRALRVKHKISQEKLAENLSITRGRYVKYEDGTSEA-----PYDILKKIALYFHMSID 60 Query: 71 -----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEI 123 + + + E +P+ + S G N + E Sbjct: 61 LILSVDIRKIDVQNLIKLEGNRLILPIQVDSFGENYIEIVSQKAKAGYLNGYADPEYIES 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDI 180 + + + SM P G I+I + +V G ++ + + Sbjct: 121 LQQITLPFLGPGKHRGFPVEGDSMPPH-EDGSIIIGRYVEKLGEVMDGKTYILITKNEGM 179 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 V K L + ++ L S N YP V+ SDI I Sbjct: 180 VYKRLNKNKKNALVLESDNSFYPNYEVKASDILEIW 215 >gi|289679295|ref|ZP_06500185.1| transcriptional repressor pyocin R2_PP [Pseudomonas syringae pv. syringae FF5] Length = 244 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 24/205 (11%) Query: 32 GLDPTS--FNKSKRFGIEG--------------RNRWPSTESIFKILAATNETICQLLDL 75 G+ T+ +K R W + K Sbjct: 41 GVHKTTQAVSKWLNGEAIAEADSMMALCAWLKVRREWLEYGVLPK-APGLETYEEAGSVK 99 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 + ++ + + +G + ++ F + + + P S + ++ Sbjct: 100 SEAAENVSKIPLRFGKVPLISWVQAGAWCEAANFDPYDNEDWISCPVPISKNGFALKVRG 159 Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSID 194 ++ S Y G I+ ++ I+ N GDR++ + PRT ++ KVL+ GR Sbjct: 160 DSMTNQGSGRS----YPAGCIIFVDPDIEANPGDRVIARVPRTDEMTFKVLVEDAGRQF- 214 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L +N YP+ + + +++ Sbjct: 215 LRPINPQYPIIDIT-EETYICGKVI 238 >gi|330953440|gb|EGH53700.1| LexA repressor [Pseudomonas syringae Cit 7] Length = 202 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 55/216 (25%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + P + Sbjct: 45 ---------KHIVALTEAGLIEVVAHQARGIRLLNSEPLPELLEIPVLGRVAAGAPIGPD 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 96 LDIHSTLHLDRSTFTRVP--DYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + L+ N Y V Sbjct: 154 D-GEVTIKRLQRR-AEQVRLLPRNPAYEPIIVTPDQ 187 >gi|332533269|ref|ZP_08409136.1| SOS-response repressor and protease LexA [Pseudoalteromonas haloplanktis ANT/505] gi|332037348|gb|EGI73803.1| SOS-response repressor and protease LexA [Pseudoalteromonas haloplanktis ANT/505] Length = 205 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 35/215 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I + + P + +A+ G + + E Sbjct: 1 MRPLTNRQAQILELIKVFIKDTGMPPTRAEIAQTLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA + ++ E+ G G G+ Sbjct: 45 EHLKALAKKGAIKMKPGASRGIQLIEEDEPEQL------------GLPLIGRVAAGSPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ G ++ + Sbjct: 93 AQEHVESHCKIDPLMFKPAADFLLRVNGMSMKDIGIMDGDLLAVHRTQTAENGQVVVARL 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + GR + L + N + V++ Sbjct: 153 D-EDVTVKRL-EKAGRKVLLHAENDDFDSIEVDLE 185 >gi|255036105|ref|YP_003086726.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254948861|gb|ACT93561.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 279 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 63/229 (27%), Gaps = 25/229 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + ER LT A + G+ + GR PS + KI +I Sbjct: 9 GSNIRFLRERRRLTQEDFAEQLGVTRVKLAAIE----AGRTENPSAVDLIKISDFFGLSI 64 Query: 70 CQLLDLP------------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 L + + K L + + + + Sbjct: 65 DNLFRIDLRGVGELPLRELEAGSPLYMKGTNLRVLAISTDKANKENVEYVPVKAKAGYRS 124 Query: 118 VGVPEIRSPHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDR 170 +++ T SMLP+ D++ + + G Sbjct: 125 GYANPEFIASLPKFSVPGLPQTGTFRMFPTTGDSMLPVPEGADVICRYVEDWTALKPGTL 184 Query: 171 -LLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++I D V K + G + L SLN Y + D+ I + Sbjct: 185 CIVILDGEQDFVFKKVTILPEGNKMRLESLNRAYEPYEISAGDVLEIWK 233 >gi|330867023|gb|EGH01732.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 202 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 45 --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLELPVLGRV-----AAGAPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 98 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + + L+ N Y V Sbjct: 154 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 187 >gi|320105069|ref|YP_004180660.1| SOS-response transcriptional repressor, LexA [Isosphaera pallida ATCC 43644] gi|319752351|gb|ADV64111.1| SOS-response transcriptional repressor, LexA [Isosphaera pallida ATCC 43644] Length = 201 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 45/181 (24%), Gaps = 7/181 (3%) Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 K +R G R + K + L T + ++ P Sbjct: 21 KIQRRGYGPTVREIGQQFDIKSPNGVMCHLKALQKKGLIHRETNMARAIQLLDDPTTP-E 79 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILI 158 G G G V E + + A + SM GD +I Sbjct: 80 PVGIPLRGRIAAGQPIEAVEQEEFLAVQDWQLA--GDKFALQVSGDSMIEEHIADGDYVI 137 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + G + + ++ K + L N Y +E + + Sbjct: 138 IKQQKVARDGQIVAVADGDNEVTLKRFFKEKN-RYRLEPANKNYKPIY--RDHVEILGVL 194 Query: 219 L 219 + Sbjct: 195 V 195 >gi|257487771|ref|ZP_05641812.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627967|ref|ZP_06460921.1| LexA repressor [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649729|ref|ZP_06481072.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 2250] Length = 205 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 4 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 48 --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLELPVLGRV-----AAGAPIGPDLD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L + + L+ N Y V Sbjct: 157 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 190 >gi|294634335|ref|ZP_06712873.1| repressor LexA [Edwardsiella tarda ATCC 23685] gi|291092232|gb|EFE24793.1| repressor LexA [Edwardsiella tarda ATCC 23685] Length = 202 Score = 75.6 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I E+ + P + +A++ G R P+ Sbjct: 1 MKALTARQQQVYDLIRDHIEQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + E + G G G Sbjct: 43 -------------AEEHLKALQRKGVIEIVSGASRGIRLLMEDESGLPLIGQVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGYYQVDPSLFKPNADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 -EDEVTVKRLKKQ-GNVVQLLPENSDFQPIVVDLRE 183 >gi|2293118|gb|AAB68649.1| LexA [unidentified cloning vector] Length = 230 Score = 75.6 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|330974540|gb|EGH74606.1| repressor protein c2 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 234 Score = 75.6 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 28/237 (11%) Query: 3 SFSHKKIWEA----IDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPS 54 +++ A + + +++ P G L++ G+ P + +K P Sbjct: 1 MVQIEELRAAFATRLKKALAENHVEPWGAGVRLSKMTGVTPKAASKWLNGEAI-----PG 55 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP--SGSGGFFDSGVFPTG 112 + + A N + L + + E+ + S + G Sbjct: 56 PAKMRALSEALNTPLGWLQNGAEGLPVSGHPVSIELSNVSEVEQSSRMYRYPVVSSVAAG 115 Query: 113 NKWNTVGVPEIRSPHNGI---YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQV 165 V Y + + + SM +G ++++++ ++ Sbjct: 116 AWAEAVEPHPNGFSDRYEVSDYKAKGKAFWLEVVGDSMTAPAGTSVPEGMLILVDTGVEA 175 Query: 166 NCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218 G ++ P + D K LI + L LN Y + D + I R+ Sbjct: 176 RPGKLVVAKLPSSNDATFKKLI-DDAGQLYLKPLNPGYSMIKCT-DDCKIIGVAVRV 230 >gi|225871051|ref|YP_002746998.1| phage repressor protein [Streptococcus equi subsp. equi 4047] gi|225700455|emb|CAW94865.1| putative phage repressor protein [Streptococcus equi subsp. equi 4047] Length = 262 Score = 75.6 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 59/236 (25%), Gaps = 39/236 (16%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + N L++ G+ P++ + P ++ KI + Sbjct: 26 LLNETNTKQVELSKATGIPPSTLTGYVKGTS-----LPIPGNVQKIADYFGLMKSDIDPR 80 Query: 76 PFSDGRTTE-------------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + E ++ +L F + + Sbjct: 81 FAPRKKNHELKIPTSPLVKKITTTVVELNVPRKQKVLDFATDQLKEQKNKMTSMEKKLYE 140 Query: 117 TVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQ 164 ++ + Y D SM P Y G+++++ Sbjct: 141 YKVYEKLSAGTGYGYFGDGNYDTVFYEEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGF 200 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 G + G K + + + L+SLN Y D I +I+ Sbjct: 201 DYEG-GVYAVEWDGQTYIKKVYREKDG-LRLVSLNKKYKDKFAPFSEDPRIIGKIV 254 >gi|218132379|ref|ZP_03461183.1| hypothetical protein BACPEC_00238 [Bacteroides pectinophilus ATCC 43243] gi|217992717|gb|EEC58719.1| hypothetical protein BACPEC_00238 [Bacteroides pectinophilus ATCC 43243] Length = 232 Score = 75.6 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 21/230 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNR-WPSTESIFKIL 62 + E I ++ ++ L+ G L + + ++ E + I Sbjct: 4 LGEIISTHRKKLGISQVELSNMLGTHGYSLTNKAISTWEKDAAEPSISVLLLLCKLLNIT 63 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 E + D P +D + + + + SG + + P +P Sbjct: 64 DIYGEHYGENPDNPLADLNEEGQAKAKEYIELLKMSGMYTPTPAVIIPFRRNIRLFDIPA 123 Query: 123 IRSPHNGI----YAI--------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + + Y+I D + SM P + G I+ ++ ++ G+ Sbjct: 124 SAGTGSFLDGENYSILEVGEEVPAEADFGIRISGDSMEPQFINGQIVWVHQQETLSTGEI 183 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G+ K L + L+SLN Y + E S + +++ Sbjct: 184 GIFYFD-GNAYCKKL-KDDEDGLFLLSLNTRYEPIPIKETSSFKVFGKVV 231 >gi|317969088|ref|ZP_07970478.1| SOS-response transcriptional repressor LexA [Synechococcus sp. CB0205] Length = 208 Score = 75.6 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 7/190 (3%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL-DLPFSDGRTTEKKEKEIPLL 93 I PS + + + + Q G T K+ + L Sbjct: 15 QQELYDWLSQYIGEHRHSPSIRQMMEAMGLRSPAPIQSRLRHLQQKGWITWKEGQARTLQ 74 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YR 152 + GG G G T E R + A + SM+ Sbjct: 75 LLGDALGGGIPVLGAVAAGGLVETFDDVEERLELEPVLATRG-LFALTVNGDSMVDAHIA 133 Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD++++ + G + K GR + L + N Y ++ Sbjct: 134 DGDVVLMEPVSEPSRLREGTIVSALVPGSGTTLKHFHRD-GRQVRLEAANPAYEPILIDA 192 Query: 210 SDIEWIARIL 219 + +++ Sbjct: 193 DQVAIQGKLV 202 >gi|332308547|ref|YP_004436398.1| transcriptional repressor, LexA family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175876|gb|AEE25130.1| transcriptional repressor, LexA family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 207 Score = 75.6 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 33/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I + P + +AR G + ++ R + E Sbjct: 1 MRPLTPRQEEVLQLIKTTMLDTGMPPTRAEIARHLGFKSA---NAAEEHLKALARKGAIE 57 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + G G G Sbjct: 58 IL-----------------------PGTSRGIRLTEPLEDQLEDQGLPLIGRVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E+ + + D + SM + GD+L ++ V+ G ++ + Sbjct: 95 AQEHVEMHYKVDPSLFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTTDVHNGQVVVARV 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + GR + L + N + V+++ Sbjct: 155 D-EDVTVKRLERK-GRQVVLHAENDDFQPIKVDLA 187 >gi|319937230|ref|ZP_08011637.1| hypothetical protein HMPREF9488_02472 [Coprobacillus sp. 29_1] gi|319807596|gb|EFW04189.1| hypothetical protein HMPREF9488_02472 [Coprobacillus sp. 29_1] Length = 198 Score = 75.6 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 66/218 (30%), Gaps = 33/218 (15%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I RH LT +A + G+ ++ ++ G + E++ ++ A Sbjct: 2 ELKDIIKDYKYRHQLTNDEIAAQLGVTKSTVSRWI----SGDVKRIQEETLSRLNALLGY 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 I ++ + + + V + Sbjct: 58 NIDPIIKGKSVHLKRPILGYAKAGYDMYAQENYM------------GDEEVTEEDFY--- 102 Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 D + Q SM+ GD+ ++ V+ G+ ++ ++ K +I Sbjct: 103 -------KGDYFLQIQGDSMIGSGIMDGDLALIKQCSTVSSGEIAVVMIGDDEVTVKKVI 155 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219 + + L + N + I I +++ Sbjct: 156 KKPD-MLVLEATNPLTENRYFSQQEIQQLPIRIIGKVI 192 >gi|301300653|ref|ZP_07206842.1| peptidase S24-like protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851761|gb|EFK79456.1| peptidase S24-like protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 258 Score = 75.6 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 42/247 (17%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ + + + R+ G+ ++ + R PS ++ K+ N Sbjct: 17 ISATLNELLQLSGKKQIDITRQTGIPASTLTGYFKGT-----RLPSPVNVQKLADFFNVL 71 Query: 69 ICQLLDLP-------------------------------FSDGRTTEKKEKEIPLLYFPP 97 + + ++++ ++ Sbjct: 72 KSDVDPRFKKISESDTDGLRIRLLSKYEKLNTENKKKVVDYADNKLKDQKRQQNKIHPIN 131 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 ++ + E D + SM P + G I+ Sbjct: 132 ENDNTYYVDVLGSVSAGTGEWLTDEQHEEVMVNNEPPAHDFALRVNGDSMTPTFSDGQII 191 Query: 158 ILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEM-SDI 212 +N +V ++ G+ K ++ R L+SLN Y V D Sbjct: 192 YVNKIYDTDEVRNNQFVI-AELNGNSYVKKIVFDNNRKDCQLISLNKEYNPINVTKDDDF 250 Query: 213 EWIARIL 219 + + ++ Sbjct: 251 KIVGLVV 257 >gi|327198274|ref|YP_004306849.1| gp5 [Burkholderia phage KS14] gi|310657237|gb|ADP02350.1| gp5 [Burkholderia phage KS14] Length = 235 Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 21/222 (9%) Query: 8 KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I +DRM E + + LA G +S K R+R P E + Sbjct: 7 RIQGIVDRMKEVVGVKSDVDLAEAIGASRSSPAVWK-----IRDRMPLAECVSLAEKEGV 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT----GNKWNTVGVPE 122 +L E+ I + GS + P +T+ +P Sbjct: 62 SLDWLVLGRGTPGIEEPEQNLNPIAMPDIEGGGSYVELPAFEMPAFIEGETAQSTIRLPR 121 Query: 123 IRSPHNGIYAIQT---------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + ++ + + SM GD+++++ + D + + Sbjct: 122 AWLEPEALGIVEGVNDSSFAPMETIAMRVPGNSMATTINNGDVVLVDR--RPRDVDGVYV 179 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 I + + G + L++ N Y + + ++ + Sbjct: 180 LRMGDSIRLRRVQRMHGGELHLLTDNPAYKSEIISAEQVDAV 221 >gi|15674725|ref|NP_268899.1| putative cI-like repressor [Streptococcus pyogenes M1 GAS] gi|94992052|ref|YP_600151.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096] gi|13621848|gb|AAK33620.1| putative cI-like repressor, phage associated [Streptococcus pyogenes M1 GAS] gi|94545560|gb|ABF35607.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096] Length = 253 Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 69/241 (28%), Gaps = 31/241 (12%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---------GRNRWP 53 ++ +I I E ++ S LAR G+ ++ ++ E + Sbjct: 1 MRTNSEIISLIQSKVEERKMSMSELARNVGIAKSTMSRYFNKTREFPLNRADDFAKALNI 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 STE + I + +LL + + F + Sbjct: 61 STEFLLGIDLNSEVDGSELLGIYRELEEQRRVIVLDTAKEQLEEQTKIINFSDKKTDIED 120 Query: 114 KWNT--VGVPEIRSPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGDIL 157 + S + D + SMLP Y +GD+L Sbjct: 121 IFEVKGTTFAAAASGFGRGFEADDYDTYTVYTDEEPPHYDYAIGIRGDSMLPKYEQGDML 180 Query: 158 -ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIE 213 I++ + G ++ G+ K + + + L+SLN Y + D Sbjct: 181 YIVDKGMSTYSGQLCIVVHN-GNTYFKKVYTEHDG-LRLVSLNKKYSDIFIGYPPAEDTY 238 Query: 214 W 214 Sbjct: 239 I 239 >gi|256378025|ref|YP_003101685.1| LexA repressor [Actinosynnema mirum DSM 43827] gi|255922328|gb|ACU37839.1| SOS-response transcriptional repressor, LexA [Actinosynnema mirum DSM 43827] Length = 219 Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 54/217 (24%), Gaps = 28/217 (12%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I E I RH P + GL TS S L Sbjct: 22 QRRILEVIQDSVRRHGYAPGAREIGDAVGLRSTS----------------SVSRHLAALE 65 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 D R + E+ G G + Sbjct: 66 EHGFLRRGASVSRPVDVRLFLRPERRAESGDAVAVPVVG-----HIAAGAPIAAEEHVDD 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + + SM+ GDI+++ + + G + + Sbjct: 121 VLTLSRDLTGRGTVFALRVRGDSMVDAAICDGDIVVVRQQHEAHSGQIVAAMID-DEATV 179 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + RRG + L N Y + + ++ Sbjct: 180 K-VYRRRGGHVVLEPRNKAYADI--DGDGAAILGVVV 213 >gi|270308887|ref|YP_003330945.1| LexA repressor [Dehalococcoides sp. VS] gi|270154779|gb|ACZ62617.1| LexA repressor [Dehalococcoides sp. VS] Length = 214 Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 59/213 (27%), Gaps = 23/213 (10%) Query: 11 EAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I R R+ PS + + TS + + + K+ + Sbjct: 14 DFIARFRRRYGYPPSIRDIVNGCNISSTSVVDY------------NLKILQKMGLIRRQA 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 T E + + +S F + V E + Sbjct: 62 EISRGIELVGTEETEEGRISIPVIGQIAAGIPIPVPESDSFAVVTSDENIEVTEDLTRGR 121 Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLI 186 + + SM L GD++I+ V+ G+ + ++ K + Sbjct: 122 ------ENIYALRVKGVSMIEDLINDGDLVIMQHTQTVDNGETAAVWLKDQKEVTLKKVY 175 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L N P + ++E R++ Sbjct: 176 -MEPGRVRLQPANRTMPPIYTQPDNVEIQGRVI 207 >gi|260655665|ref|ZP_05861138.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260629582|gb|EEX47776.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 247 Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 42/240 (17%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL------- 62 I + ++ ++ LA + + P +I + Sbjct: 9 GANIRELRKKRGISARVLAEAVNISTPFVYDIENGRT--LPSVPVLNAIAQYFGVTTDYL 66 Query: 63 -------------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T + + P + +PLL + G S Sbjct: 67 MGLDEPGAPSSADKQTAASDNEAASYPNDPRVIPLTNCRRVPLLSPEATAHCGGGCSFFE 126 Query: 110 PTGNKWNTV-----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 T + + + +A+ ++ ++ GD L++N A++ Sbjct: 127 ITSDSTEFIICTPDELGSPIDDLRPPFAVSSEGNCLQSSG------ISDGDKLVVNPAVE 180 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-----EWIARIL 219 V + +I R + AK + + I+L S N V V D+ E +++ Sbjct: 181 VRDFNVCVICWR-DHLSAKRIRKLQNGDIELRSDNG---VAVVPADDVENGLFEIWGKVI 236 >gi|187939816|gb|ACD38956.1| hypothetical protein PACL_0716 [Pseudomonas aeruginosa] Length = 251 Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 62/246 (25%), Gaps = 26/246 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + A+ +AE+ T A + +PT ++ I + Sbjct: 1 MIDITTIRRANAL-TLAEKEGGTV-AFAARIDREPTQVSRLIGSNPTKNIGNKLARHIEE 58 Query: 61 ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 Q + + L + S G + ++ V Sbjct: 59 KFNMPRGWLDIQHTPEQHQRVAEPTAEYRSGGNLESLSAWSDGDPLAPDEVEIPYFDEVE 118 Query: 120 VPEIRSPHNG-----------------IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 + ++ SM PL G I+ ++ + Sbjct: 119 IAAGGGRVPDLELAKRKIRFPKATLREAAVDKSTSVCVNVTGNSMEPLIADGSIIGVDLS 178 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMS-----DIEWIA 216 + + + K + G I L S N YP + DI I Sbjct: 179 VNTIVDGEIYALKHDDLLRVKFVYRLPGGGIRLRSYNREEYPDEEYTRDQMRAGDISVIG 238 Query: 217 RILWAS 222 + W S Sbjct: 239 WVFWWS 244 >gi|260599564|ref|YP_003212135.1| LexA repressor [Cronobacter turicensis z3032] gi|260218741|emb|CBA34089.1| LexA repressor [Cronobacter turicensis z3032] Length = 202 Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEETGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPGLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNIVELLPENNEFKPIVVDLRE 183 >gi|218780148|ref|YP_002431466.1| phage repressor [Desulfatibacillum alkenivorans AK-01] gi|218761532|gb|ACL03998.1| putative phage repressor [Desulfatibacillum alkenivorans AK-01] Length = 230 Score = 75.2 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 12/219 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 +W+++ + A + + LAR+ G+ N K+ + +++ + L A + Sbjct: 13 LWKSVWKQARQRGWIMAELARRTGISAQHLNAIKKGE-----KGMGEKTLNRFLKALDMD 67 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +LL + + F SG + + + V Sbjct: 68 VEELLAQGAAPRPEGWEGPSGEGRPEFALVPKYKARLSGGPGSLSSSDEVEANFAFRADW 127 Query: 129 GIYAIQTQDTRH-KTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAK 183 + + SM P+ GD+++++ + V G K Sbjct: 128 IASKGGGESLALFEVTGDSMYPVICHGDVVLVDQSLSGPEDVISGRP-YALVEGAHTKVK 186 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILWA 221 L + P ++ S I R++W Sbjct: 187 NLQWQGAELWVHSGKESGEPPYCLDQSAYFRIIGRVIWV 225 >gi|239998667|ref|ZP_04718591.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae 35/02] gi|240013800|ref|ZP_04720713.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240016241|ref|ZP_04722781.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|240112585|ref|ZP_04727075.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae MS11] gi|240116011|ref|ZP_04730073.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae PID18] gi|240117625|ref|ZP_04731687.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240121382|ref|ZP_04734344.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|240123183|ref|ZP_04736139.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae PID332] gi|240125432|ref|ZP_04738318.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae SK-92-679] gi|260440859|ref|ZP_05794675.1| putative lambda repressor protein cI, putative phage associated protein [Neisseria gonorrhoeae DGI2] Length = 115 Score = 75.2 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 + SM P GD++ +++A++ GD L + + AK L S G + ++S Sbjct: 24 VITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLKAKRLQSTVGGGLMIISD 83 Query: 199 NCCYPVDTVEMSD---IEWIARI 218 N Y +TV D + I RI Sbjct: 84 NSSYRTETVRGEDLNAVRIIGRI 106 >gi|284006683|emb|CBA71944.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 220 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 28/224 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + + + + + T L + G+ + ++ E P +++ K+ A N Sbjct: 6 KTLGQRLKYLRKLKKYTQVTLGKAIGVTGVTVGYWEKDLNE-----PGGKALSKLARALN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T LL + + F +G + +P Sbjct: 61 TTENYLLYGKNPGSVIPINNSNIRFIPLLTWEEAISFTKNGGY---------EMPNQEKV 111 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-- 179 + + + D +M P KG I+ ++ + G + Sbjct: 112 IPDFVSASPKAFCVRIDDDTMVNPYGEPSIPKGAIITIDPLDEPTNGKIVAAIISDNLSN 171 Query: 180 -----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ K L+ S LM LN Y + E I + Sbjct: 172 PPRSIMMVKKLVIDGLNSY-LMPLNPRYDKILIT-DSCEIIGTV 213 >gi|253991400|ref|YP_003042756.1| LexA repressor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782850|emb|CAQ86015.1| LexA repressor [Photorhabdus asymbiotica] Length = 201 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 3/111 (2%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 G G G E + + D + SM + GD+L ++ Sbjct: 74 GLPLIGRVAAGEPLLAQEHIESHYQVDPALFKPSADFLLRVSGMSMKDIGIMDGDLLAVH 133 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 V G ++ + ++ K + G ++L++ N + +++ + Sbjct: 134 KTQDVRNGQVIVARI-EDEVTVKRF-KQTGNKVELLAENPEFKPIVIDLRE 182 >gi|326575737|gb|EGE25660.1| peptidase S24-like protein [Moraxella catarrhalis CO72] Length = 228 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 58/225 (25%), Gaps = 17/225 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + + PS A KA P + + + + R + + + L + Sbjct: 2 FLSHLLNAQGVMPSERA-KADQFPKMIRRYSKG--QAKPRNDKMKLLTQCLGVPITWLDY 58 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGVPEIRSPHN-- 128 + + + F F G+ P Sbjct: 59 GEGEMTKNNDKLTPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMG 118 Query: 129 -----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + D SM P + GD + ++ + R+ + K Sbjct: 119 RRTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCK 178 Query: 184 VLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 L + ++S N +P + + E I + S Sbjct: 179 RLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 223 >gi|157370276|ref|YP_001478265.1| putative phage repressor [Serratia proteamaculans 568] gi|157322040|gb|ABV41137.1| putative phage repressor [Serratia proteamaculans 568] Length = 214 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 21/225 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + E + L + + ++ R + ++ Sbjct: 1 MNTTENRRERLKAWFADKTLPANE--------KSYLSQLMTGKASFGER-----AARRLE 47 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 L D+ + E I +L S G +S V ++ + Sbjct: 48 TTYGMPAGFLDDVSDARLAQQEVANYRIEVLDVQASAGPGVINSEVV---QTIRSIEYTD 104 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + +Q SM GD + ++ + GD + + + Sbjct: 105 EHALQMFGGKQASQVKMITVDGDSMAGTIELGDAIFVDVSKDYFSGDGIYVFLYKNHLHV 164 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA-SQ 223 K L + + S N Y + ++ I R+L + SQ Sbjct: 165 KRLQMLPD-HLLVHSDNAQYSDWVITEENEHKLKVIGRVLLSQSQ 208 >gi|91217490|ref|ZP_01254449.1| hypothetical protein P700755_19772 [Psychroflexus torquis ATCC 700755] gi|91184375|gb|EAS70759.1| hypothetical protein P700755_19772 [Psychroflexus torquis ATCC 700755] Length = 217 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 37/224 (16%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + +T + A K G+ + ++ G+ +++ E++ K Sbjct: 6 VKEVRKALKMTQTEFAEKVGVSKITIISYEKGGVIPKSKSKILENMHKEA---------- 55 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRSPHNGI 130 K F +G + +P+I Sbjct: 56 -------FENDTSKASLKDYELIKLVPLVASRVQAGFLSGWGDDEYIGELPKIPWEVEKE 108 Query: 131 YAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQ--------VNCGDRLLIKPRT 177 + + + + SM DIL+ + +N D ++ Sbjct: 109 F--KGNYFCFEVEGDSMNNSNPSEAILDKDILLCREIQKHHWKNKLHINSWDFVIAHKDR 166 Query: 178 GDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G IV K + + + L SLN Y TV + D+ + ++ Sbjct: 167 G-IVVKRITDQNVEYGKLALHSLNNLYEDYTVNIEDVIALFNVV 209 >gi|282882014|ref|ZP_06290655.1| repressor LexA [Peptoniphilus lacrimalis 315-B] gi|281298044|gb|EFA90499.1| repressor LexA [Peptoniphilus lacrimalis 315-B] Length = 205 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 55/214 (25%), Gaps = 29/214 (13%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I + ER P+ + + G+ TS ++ K+ + Sbjct: 12 ILFFIKKEIERKGYPPTVREICQGVGIKSTSTVYY---------------ALEKLENKSY 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + P + N +T+ + Sbjct: 57 IRKDPSKTRAIEIIDQNDGILTSKKKTIDVPILGKVTAGIPILAVENLEDTMPLSSD--- 113 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + K SM+ + GD +I+ GD++L + K Sbjct: 114 ----FVRDRDLFILKVSGESMINVGILDGDYVIIQRTNYAESGDKVLALIN-DEATIKTF 168 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L N V+ D++ + I+ Sbjct: 169 YKEKDG-FRLQPENDFMKPIYVK--DLKILGTIV 199 >gi|15988320|pdb|1JHH|A Chain A, Lexa S119a Mutant gi|15988321|pdb|1JHH|B Chain B, Lexa S119a Mutant Length = 202 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + +M + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMAMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|119943901|ref|YP_941581.1| SOS-response transcriptional repressor, LexA [Psychromonas ingrahamii 37] gi|166224642|sp|A1SR67|LEXA_PSYIN RecName: Full=LexA repressor gi|119862505|gb|ABM01982.1| SOS-response transcriptional repressor, LexA [Psychromonas ingrahamii 37] Length = 209 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 67/225 (29%), Gaps = 35/225 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + I + + P+ LA+ G + ++ R + E Sbjct: 1 MKELTKRQNEVLDVIKDQILKTGMPPTRVELAKILGFRSA---NAAEEHLKALARKGAIE 57 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + T+ + + G G G Sbjct: 58 ILA---------------------GTSRGIRLLGEHQHNEKAHQDGLPLIGQVAAGEPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + Q SM + GD+L ++ + G ++ + Sbjct: 97 AQQHIETYYDVDPALFHPSADFLLRVQGESMKDIGIMDGDLLAVHKTQDIKNGQVVIAR- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 D+ K GR + L + N + ++++ DIE IA Sbjct: 156 VEDDVTVKRFYR-EGRQVILKAENNDFGPIKIDLAYQSFDIEGIA 199 >gi|117925371|ref|YP_865988.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp. MC-1] gi|117609127|gb|ABK44582.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp. MC-1] Length = 132 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 43/123 (34%), Gaps = 8/123 (6%) Query: 101 GGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 F + + P G + + + + + SM+ GDI Sbjct: 4 PIPFFTSLVPAGFPSPADDYLE--GHLDLNELLIKRPAATFFVRVTGDSMIGAGIHSGDI 61 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 L+++ +++ G ++ +G++ K L + G + LM N + + + Sbjct: 62 LVVDRSLEPINGSIVIAV-VSGELTVKRL-KKDGGRVWLMPENKDFQPMEISEEQEMTVW 119 Query: 217 RIL 219 ++ Sbjct: 120 GVV 122 >gi|313900347|ref|ZP_07833841.1| peptidase S24-like protein [Clostridium sp. HGF2] gi|312954896|gb|EFR36570.1| peptidase S24-like protein [Clostridium sp. HGF2] Length = 194 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 63/209 (30%), Gaps = 37/209 (17%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 R +L+ + G+ ++ + + + + ++ + Sbjct: 11 RHRDSLSLESVGDFVGVSKSTVKRWESGESSNVPQA----RLDRLSELFGIDV------- 59 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 + P+L + +G F + + + V Sbjct: 60 -----PACLQGHVKPILGYVKAGYDLFANENLL----GYEEVS----------AREAAQG 100 Query: 137 DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 D + Q SM GD++ + S V GD ++ ++ K ++ + ++ L Sbjct: 101 DYYLRVQGDSMTGSRIYDGDLVYVKSCSDVENGDIAVVLLNHSEVTIKKILKKE-HTVIL 159 Query: 196 MSLNCCYPVDTVEMSDIE-----WIARIL 219 M+ N +IE I ++L Sbjct: 160 MATNPVVEPRVFTQEEIEEGQLKIIGKVL 188 >gi|56750016|ref|YP_170717.1| DNA polymerase V [Synechococcus elongatus PCC 6301] gi|81300358|ref|YP_400566.1| SOS mutagenesis protein UmuD [Synechococcus elongatus PCC 7942] gi|56684975|dbj|BAD78197.1| DNA polymerase V [Synechococcus elongatus PCC 6301] gi|81169239|gb|ABB57579.1| UmuD protein. Serine peptidase. MEROPS family S24 [Synechococcus elongatus PCC 7942] Length = 186 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 41/107 (38%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM+ + GD++I++ +++ G ++ Sbjct: 77 ADDYIE--QRLDLNRHLIKNPAATFMARVSGDSMIGVGIHDGDVIIVDRSLEPRDGQIVI 134 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + + + L + N YP + + I ++ Sbjct: 135 AVLN-GELTVKRL-RQERQRLFLQAENPNYPDLEITDASAFQIWGVV 179 >gi|238922409|ref|YP_002935923.1| repressor LexA [Eubacterium eligens ATCC 27750] gi|238874081|gb|ACR73789.1| repressor LexA [Eubacterium eligens ATCC 27750] Length = 143 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 3/119 (2%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 G V P+ + + + SM P + G I + Sbjct: 15 IDIFENAVSAGTGNFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHDGQIAWVLQ 74 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 V G+ + G+ K L + + I L+SLN Y V E ++ ++L Sbjct: 75 QESVANGEIGIFALN-GEAYIKKLQNDKDG-ISLISLNEKYAPIKVGENDRLDIFGKVL 131 >gi|330968365|gb|EGH68625.1| cI repressor protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 205 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 22/195 (11%) Query: 48 GRNRWPSTESIFKILAATNETICQ---------LLDLPFSDGRTTEKKEKEIPLLYFPPS 98 G + E++ K+ + + TE +E I + Sbjct: 6 GGKLALNLEALIKLSEVLDFEPEDVSPTLGRGITRKTNSTAPGKTESRESFIQRDEGDEN 65 Query: 99 GSGGFFDSGVFPTGNKWN--TVGVPEIRSPHNGIYAI----QTQDTRHKTQDTSMLPLYR 152 + + + G + V + + A SM P Sbjct: 66 YAFIPQYTAMAAAGAGHDNPHVEIRSTLAFKKEWLASKGLQPRNLRVIYADGESMWPAIN 125 Query: 153 KGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTV- 207 D+L+++S+ + +I+ V K L+ + L S N YP Sbjct: 126 DQDVLLVDSSQVEPVENGVFVIESGVDGTVVKRLVRAPLQQWILRSDNTDKAKYPDRFYL 185 Query: 208 --EMSDIEWIARILW 220 E ++ + + R++W Sbjct: 186 RSESNEHQIVGRVIW 200 >gi|160896773|ref|YP_001562355.1| putative phage repressor [Delftia acidovorans SPH-1] gi|160362357|gb|ABX33970.1| putative phage repressor [Delftia acidovorans SPH-1] Length = 204 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 53/212 (25%), Gaps = 31/212 (14%) Query: 27 LARKAG--------LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 +A G + P + ++ G + Sbjct: 1 MAEALGPDWMAGMEVQPETVRTWRKRGEVP-------------ARQLLRASQRAGRPLEY 47 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------VPEIRSPHNGIYA 132 T K + G+ S Sbjct: 48 FNGTGAAKPVARHGGAAEDEFTQIEMLDAHVSAGHGAVNGPDEVIGRFAFRTSWLQSKGL 107 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-RGR 191 + + + SM GDIL++N+++ D + + G+ K+L Sbjct: 108 GRHNAKIVRARGRSMADRINDGDILLVNTSVDTLTQDGVYVIELEGENYVKLLERDFSTG 167 Query: 192 SIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 + ++S N YP +E + R+LW Sbjct: 168 GVRIVSYNPAYPPQVLEGEAANRLRICGRVLW 199 >gi|13471985|ref|NP_103552.1| phage repressor protein C [Mesorhizobium loti MAFF303099] gi|14022730|dbj|BAB49338.1| probable phage repressor protein C [Mesorhizobium loti MAFF303099] Length = 234 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 60/223 (26%), Gaps = 19/223 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ AI + ++ L +A D + + P TE++ K A Sbjct: 12 KVGAAIRQARKQRGLVMRHIAEHNDTDVAAVGNWETGRN-----LPKTENLLKTAAFLRV 66 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-----PE 122 L + ++ G D V + P Sbjct: 67 DPVAL-GKGEVVFLDDADALSDAEIVTDAGPMPAGSMDIEVLGAAVGGDDGDFTFNGEPA 125 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--- 179 + SM+P Y GD++ GD ++I+ + Sbjct: 126 GYVQRPPGVRNLPKVFALHVLSDSMVPRYEPGDLIYCG-GRDAIPGDHVVIETFPEENEK 184 Query: 180 ---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ R + + N T I+ + R++ Sbjct: 185 NGKAFVKKLVKRTASELVVEQYNP-PKTLTFNRYAIKHVWRVI 226 >gi|219850095|ref|YP_002464528.1| SOS-response transcriptional repressor, LexA [Chloroflexus aggregans DSM 9485] gi|219544354|gb|ACL26092.1| SOS-response transcriptional repressor, LexA [Chloroflexus aggregans DSM 9485] Length = 216 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 60/218 (27%), Gaps = 22/218 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +I++ I ++PS + R + TS E + KI+ Sbjct: 10 QAEIYQYIVDFIRERGISPSIRDIQRDLHISSTSVVSYNLNV---------LERLGKIIR 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + + + +G N + + VP Sbjct: 61 NDKISR----GISLPNLTPALLNQAVGRVPLLGTITAGSPLPDPEEIDLNSADQIVVPAD 116 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK-PRTGDIV 181 P N + + + SM+ GDI++L G + + + Sbjct: 117 VIPPNRL----NGVYAMRVRGQSMIDALIDDGDIVLLRWQETAENGQMVAARLIDENAVT 172 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I L N P +++ R++ Sbjct: 173 LKKFYR-EDGRIRLQPANATMPPIYTAPDNVQIQGRVI 209 >gi|325272948|ref|ZP_08139268.1| LexA repressor [Pseudomonas sp. TJI-51] gi|324101918|gb|EGB99444.1| LexA repressor [Pseudomonas sp. TJI-51] Length = 202 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K+ I++ I H PS +A + G S + Sbjct: 1 MNNLTPKRRAIFDFIRERISDHGQPPSLADIATRFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + A + + + G + +L P G G Sbjct: 45 ---KHITALCQAGYIDVTPNQARGIRLADPLRRPEMLEVPVLGQVAAGAPIGPDLGIHEQ 101 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 + P + K + SM+ GD++ + G ++ + Sbjct: 102 LLLDPSLFRRTPD--------YLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L G+ L+ N Y V + Sbjct: 154 D-GEVTIKRLQRV-GKHYRLLPRNPAYAPIDVLPTQ 187 >gi|259908182|ref|YP_002648538.1| Protein UmuD [Erwinia pyrifoliae Ep1/96] gi|224963804|emb|CAX55306.1| Protein UmuD [Erwinia pyrifoliae Ep1/96] gi|283478109|emb|CAY74025.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia pyrifoliae DSM 12163] gi|310767905|gb|ADP12855.1| Protein UmuD [Erwinia sp. Ejp617] Length = 139 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + V + + + K SM GD+LI++ ++ GD ++ Sbjct: 32 DYVE--DRIDLNKLAIKHPSATYFIKVSGDSMREAGIGDGDLLIVDRSLNAVHGDIVVAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218 G+ K L + + L+ N YP + + ++E + Sbjct: 90 I-AGEFTVKELRTHP--VLQLVPHNPHYPPISFQNAEELEIFGVV 131 >gi|260597557|ref|YP_003210128.1| protein umuD [Cronobacter turicensis z3032] gi|260216734|emb|CBA30137.1| Protein umuD [Cronobacter turicensis z3032] Length = 155 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 6/132 (4%) Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSMLP 149 L +P + F + + G + + + A + + SM Sbjct: 14 HPLVWPVTPVNIPFYADLISAGFPSPAADYIDSGIDLVSHLIAHPSSTYVLRVAGDSMRD 73 Query: 150 L-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TV 207 G +L+++ ++ D ++ G+ K L++ L + N YP Sbjct: 74 AGILDGSLLLVDFSLHAKHNDIVV-ANIGGEFTVKRLVTYP--VAQLRAENPAYPPIAVY 130 Query: 208 EMSDIEWIARIL 219 + D+E + ++ Sbjct: 131 DADDLEIVGVVI 142 >gi|237748614|ref|ZP_04579094.1| transcriptional repressor LexA [Oxalobacter formigenes OXCC13] gi|229379976|gb|EEO30067.1| transcriptional repressor LexA [Oxalobacter formigenes OXCC13] Length = 212 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 24/224 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + ++I + I R ++ P+ A L S N ++ Sbjct: 1 MIKLTVRQQEILDLIARSIDQTGFPPTRAEIAAELGFKSVNAAEEH-------------- 46 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L A + S G + + +P + G G+ Sbjct: 47 ---LQALARKGVIEMVPGISRGIRLVQTDVAVPFVARENQIQYSVPLVGRVAAGSPILAQ 103 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + D K + SM + +GD++ + + G ++ + Sbjct: 104 EHIEKNYQLDPALFTDKPDYLLKVRGLSMRDIGILEGDLIAVKKTEKARDGQIIVAR-LG 162 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL 219 D+ K G+S++L+S N + V E + + ++ Sbjct: 163 DDVTVKRFKKV-GQSVELISENPDFAPIKVNRESDNFQIEGLVV 205 >gi|260911931|ref|ZP_05918496.1| SOS mutagenesis and repair protein UmuD [Prevotella sp. oral taxon 472 str. F0295] gi|260633954|gb|EEX52079.1| SOS mutagenesis and repair protein UmuD [Prevotella sp. oral taxon 472 str. F0295] Length = 146 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 5/108 (4%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + E + + + + SM GDI +++ +++ GD ++ Sbjct: 32 EDYLHETLDFNRDLIRNPEATFYGRVEGDSMIEAGICDGDIAVIDRSLEPRDGDVVVG-Y 90 Query: 176 RTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILW 220 + K L R I+L N + ++ D E ++W Sbjct: 91 INEEFTIKYLDLCHREEGYIELRPANPNFCPIRIDEDDSFEVWGVVIW 138 >gi|218510024|ref|ZP_03507902.1| peptidase S24 and S26 domain protein [Rhizobium etli Brasil 5] Length = 237 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 70/236 (29%), Gaps = 36/236 (15%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 W+ +D + + LAR+AG+ + NK G+ P E + K+ +A ++ Sbjct: 7 WKRLDSRRIELGWSGAELARRAGIPYANINKYLN----GKIEQPRGEEMQKLASAIGKSA 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L D E + + G F ++ + +P + Sbjct: 63 LWLRDGLELSDVEAAPIEGRLLPVAVVGKVEAGTFREVDDMDQSERELLSLPADDRFPS- 121 Query: 130 IYAIQTQDTRHKTQDTSMLP----LYRKGDILI------LNSAIQVNCGDRLLIKPRTG- 178 + SM GD +I + + G ++++ Sbjct: 122 -----ARLMAFDVSGDSMNDLRPRPILPGDRVICVSYEDVAHEAPLRDGMVVVVERSRDG 176 Query: 179 ----DIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSD-------IEWIA---RIL 219 + K + + R+ S N + V +E I R++ Sbjct: 177 GQTREWSVKQIELYQDRTEYHPRSTNLKHRPIVVPRDHSADTGTMVEIIGLVRRVV 232 >gi|326774358|ref|ZP_08233623.1| SOS-response transcriptional repressor, LexA [Streptomyces cf. griseus XylebKG-1] gi|326654691|gb|EGE39537.1| SOS-response transcriptional repressor, LexA [Streptomyces cf. griseus XylebKG-1] Length = 231 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 56/219 (25%), Gaps = 25/219 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFG--IEGRNRWPSTESIFKI 61 +KI +A+ PS L + GL TS + +G R + Sbjct: 27 QRKIVDAVRSSISDRGYPPSMRELGKATGLANTSSVAHQVGALMRKGVLRQDPRRPRAYV 86 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T + + ++ P + + +P Sbjct: 87 PTMTG---------AGVAAESGSQDAASSLMVIHAPLVGRIAAGVPTTAEEQVEDVLVLP 137 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Q K SM+ G + + G + G+ Sbjct: 138 RQLVGG-------GQVFVLKVSSDSMIKAHIMDGATVAVRRQPDAEIGGSVAAMID-GEA 189 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L + G ++ L+ N + + + +++ Sbjct: 190 TVKRLRRK-GSTVWLIPENDAVEPICADAAS--ILGKVV 225 >gi|78485203|ref|YP_391128.1| putative prophage repressor [Thiomicrospira crunogena XCL-2] gi|78363489|gb|ABB41454.1| UmuD protein. Serine peptidase. MEROPS family S24 [Thiomicrospira crunogena XCL-2] Length = 206 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V ++ + + Q SM + GDIL+++ ++ G ++ Sbjct: 97 ADDYVE--TRLDLNDKLIQNKQATFLLTVQGDSMKKAGIQDGDILVVDRSLTPQDGKIVI 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + + L+ N YP V I ++ Sbjct: 155 AALD-GELTVKTLSIKSTGT-WLVPENDNYPPIPVREESDIVIWGVV 199 >gi|262195666|ref|YP_003266875.1| transcriptional repressor, LexA family [Haliangium ochraceum DSM 14365] gi|262079013|gb|ACY14982.1| transcriptional repressor, LexA family [Haliangium ochraceum DSM 14365] Length = 226 Score = 74.8 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 53/215 (24%), Gaps = 20/215 (9%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNK-SKRFGIEGRNRWPSTESIFKI 61 ++I + I + P+ + G+ T+ N K +G R +S Sbjct: 9 QREILDFITDFIQERGYPPTLREIGEHFGIRSTNGVNDHLKALEKKGYLRREDLKSRA-- 66 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + T + + G G V Sbjct: 67 ---------MWPVQVPPEHETENRGKVIPLRKNVEEDAVVDIPILGRVAAGLPILAVENV 117 Query: 122 EIRSPHNGIY--AIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 E R + + Q + SM GD + + GD ++ Sbjct: 118 EDRVRVDRFFLGTPPQQLFGLRVVGESMIEDGILDGDYVFVKKTPTAQPGDIVV-AMIEE 176 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 + K R SI N V+ SD Sbjct: 177 EATVKRYYPERD-SIRFEPANSNMRPIVVKKSDFR 210 >gi|149377898|ref|ZP_01895627.1| LexA repressor [Marinobacter algicola DG893] gi|149357840|gb|EDM46333.1| LexA repressor [Marinobacter algicola DG893] Length = 202 Score = 74.8 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 60/207 (28%), Gaps = 31/207 (14%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + I R + P+ A L S N ++ E + + Sbjct: 7 QTQVLDIIRRYLDETGYPPTRAEIAAELGFRSANAAE-------------EHLRALARK- 52 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 G + G G G+ E Sbjct: 53 --------------GAIEMVPGASRGIRLPDVEADLGLPVVGQVAAGSPILAQEHIEDHC 98 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + D + + SM + GD+L ++ V+ G ++ + D+ K Sbjct: 99 TLQPEFFSPSADYLLRVRGMSMKDIGILDGDLLAVHRTQDVHNGQVVVAR-VGEDVTVKR 157 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD 211 + G + L++ N + V++++ Sbjct: 158 F-RKEGSKVYLIAENEEFDPIEVDLTE 183 >gi|88808444|ref|ZP_01123954.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 7805] gi|88787432|gb|EAR18589.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 7805] Length = 147 Score = 74.8 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 5/96 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V V ++ + + + SM GD+L+++ ++ G ++ Sbjct: 38 ADDYVEV--GIDLNDQLIRHPSSTFFLRVSGDSMTGAGIHDGDLLVVDRSLDPRPGRVVV 95 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 G K L R + L + N YP +E Sbjct: 96 AVLD-GGFTLKRLARHR-GRLRLEAANPDYPPLELE 129 >gi|303245343|ref|ZP_07331627.1| putative phage repressor [Desulfovibrio fructosovorans JJ] gi|302493192|gb|EFL53054.1| putative phage repressor [Desulfovibrio fructosovorans JJ] Length = 232 Score = 74.8 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 7/218 (3%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 EA DR+ + + T +A+ + +S + +KR + W L Sbjct: 15 EAFDRIKQATGMRTQVEIAKLLDIRQSSISDAKRRQSIP-DSWLIKLYQIYNLNPNWIID 73 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + P P + + Sbjct: 74 GEQPQFLGEKRGGALHVRESGDGYGRKPKYYQMPVAPMSAPEPEQQDETVTIAETLAVPE 133 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISR 188 + + + ++ M P+ +G + ++ + G + ++ K ++ Sbjct: 134 QFHKPS-LVIVRMDESDMEPVIHRGAYVGIDKDRRTIRSGGLYALDMPMEGLIIKRVVHD 192 Query: 189 -RGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + L S N Y T+ + R+ W Q Sbjct: 193 AENSRLILRSENQTYADQTIPADGAADRVVGRVTWVFQ 230 >gi|78356975|ref|YP_388424.1| LexA repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219380|gb|ABB38729.1| SOS-response transcriptional repressor, LexA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 207 Score = 74.8 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 56/196 (28%), Gaps = 11/196 (5%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 L + RF + + P+ + + +I + + ++ + K + Sbjct: 12 LQRKTLEAICRFV-DAKGFPPTVKELSEIFEISPASAHDRINQLVRKRYLKREGGKSRGI 70 Query: 93 -----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 + G+ G + Q + SM Sbjct: 71 AVARRPSEMAASLVSVPVVGMVAAGRPILAEENITGQVLVESDVVRSGQHFALRAVGDSM 130 Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 + GD++I+ GD ++ + K L + I+L+ N Sbjct: 131 IGAGINDGDLIIVRQQPIAEDGDIVVALLN-NEATVKRL-KIKDELIELVPENPEVRKIR 188 Query: 207 V-EMSDIEWIARIL-W 220 + D+ + +++ W Sbjct: 189 IRPEDDLRVLGKVVGW 204 >gi|319428033|gb|ADV56107.1| putative phage repressor [Shewanella putrefaciens 200] gi|319428273|gb|ADV56347.1| putative phage repressor [Shewanella putrefaciens 200] Length = 252 Score = 74.8 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 58/218 (26%), Gaps = 27/218 (12%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + A +A L P K P+ E + I A T+ L Sbjct: 33 SIRSFALRANLSPPVIKKYVENDST-----PNVERLVAIAEAAGVTVEWLATGKGPKYPN 87 Query: 83 TEKKEKEIPLL-----------YFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHN 128 + ++ F + S G + + + Sbjct: 88 GIIESGHQQIMEGRCGAYKANNDFLSEFALIPGYSIQVSAGWGSEGSDDIEPSRHLAFRK 147 Query: 129 GIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + SM P+ + L++N+ + + + K Sbjct: 148 RWLKWRGFAEKDLVIVWAKGDSMEPIISNNNTLLINTQRTELTDGNIYVIRSDNQLWVKR 207 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + + + L+S N YP V ++ + +++ Sbjct: 208 VQVKPN-AWLLLSDNPLYPPIEVPKTEQHNFHVVGQVV 244 >gi|33151742|ref|NP_873095.1| LexA repressor [Haemophilus ducreyi 35000HP] gi|44888096|sp|Q7VNI6|LEXA_HAEDU RecName: Full=LexA repressor gi|33147963|gb|AAP95484.1| probable LexA repressor [Haemophilus ducreyi 35000HP] Length = 211 Score = 74.8 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 62/218 (28%), Gaps = 33/218 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I++ + + + P+ +AR+ G + + E K LA Sbjct: 10 QQEIFDFLKHHIDTTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 53 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 E L P G G + E Sbjct: 54 RKGYIEMLSGTSRGIRILINNDNEDVTQDLSLP--------LIGKVAAGTPIMAIEHVES 105 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG D K SM + GD+L ++ G ++ + ++ Sbjct: 106 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVAR-VEDEVTV 164 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N V+ +IE IA Sbjct: 165 KRLEKK-GELIYLHPENDELQPIIVDPRLKYIEIEGIA 201 >gi|33770547|ref|NP_892084.1| prophage repressor [Yersinia phage PY54] gi|33636130|emb|CAD91799.1| prophage repressor [Yersinia phage PY54] Length = 215 Score = 74.8 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 24/210 (11%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ + LA + G+ + + P+ + FK+ + I + Sbjct: 19 LKALDKKR-FSVRALAERVGITSAGVSHLENSNA-----MPALDLAFKLARELDRPIEWV 72 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L + + + G + G NT+ +IR P +Y Sbjct: 73 LTGIGNYQQPGIP---------IIGTTLTGPNIEWLEKNGQGVNTLEFVDIRVPARRLY- 122 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGR 191 K + + LP Y +G++LI + G+ +++ + G + V KV S+R Sbjct: 123 ------GLKVSNDASLPRYTEGEVLIADPDATPITGEEVVVITKNGDEPVIKVFASKRDN 176 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + L S + V ++ +I I I++ Sbjct: 177 QVLLESADRKQRVIR-DLDEIIVIHPIIFV 205 >gi|119953755|ref|YP_950560.1| putative repressor [Streptococcus phage SMP] gi|118430567|gb|ABK91891.1| putative repressor [Streptococcus phage SMP] Length = 240 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 24/202 (11%) Query: 21 NLTPSGLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 + P LA +S + R K+L + + + Sbjct: 55 GIDPKALAEGVDFSSSSSPIHAIYNQLEPTRQ--------EKVLDYAEVQLEEQNKVTSI 106 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 + ++ + + G F + VP + DT Sbjct: 107 FQVREDSEDYITDYVEGLVAAGHGTFQEDNLHMEVRLRANDVP------------KKYDT 154 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 K SM P+ + D+L +N QV D + + G K L L SL Sbjct: 155 IAKVAGDSMEPMIKDNDLLFINVTSQVGINDIGVFQIN-GKNFVKKLKRDYDGRWYLQSL 213 Query: 199 NCCYPVDTV-EMSDIEWIARIL 219 N Y + E +I I ++ Sbjct: 214 NNSYEEIYLTEDDEIRTIGEVV 235 >gi|328472910|gb|EGF43758.1| P22 repressor protein c2 [Vibrio parahaemolyticus 10329] Length = 228 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 22/202 (10%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86 LA++ G+ P + +K E R + + K+L + + + Sbjct: 33 LAKRLGVTPKAVSKWLN--SESMPRQGKMKELAKVLNVS---------ASWLQYGEPDNG 81 Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 + + L PS G F G G V + S Sbjct: 82 VENVTHLDIQPSHKGDFPVLGKVSAGKFKEAV-QHFDLEYLSTTVKCHPDSYWLIVDGHS 140 Query: 147 MLP------LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLN 199 M + +G +++++ + G+ ++ K + + L+ LN Sbjct: 141 MTAPQGSGVSFLEGMLILVDPEREYCNGNFVVAYCENKHMATFKKISIEPEGTF-LVPLN 199 Query: 200 CC--YPVDTVEMSDIEWIARIL 219 Y + E ++ Sbjct: 200 PDPTYKRINIAEEFCEIAGVVV 221 >gi|322385675|ref|ZP_08059319.1| phage transcriptional repressor [Streptococcus cristatus ATCC 51100] gi|321270413|gb|EFX53329.1| phage transcriptional repressor [Streptococcus cristatus ATCC 51100] Length = 258 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 27/231 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++ + L+R G+ ++ + P E++ KI + Sbjct: 19 ISKKIKTLLKQKQIKQIELSRGTGIPASTLTGYIKGNS-----LPVLENMQKIADFFDMD 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------VPE 122 + +L S T + + + T P Sbjct: 74 VQELDPRYLSVHSPTPFSLEFTDIFQSLDQTRKQAVTDFAKKELDDQTTEERLKDNYFPY 133 Query: 123 IRSPHNGIYAIQTQ-------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + + + D + S+ P Y +G + ++ + G Sbjct: 134 KVYESFQTFLNKPEQADIVWLDKELDYDIALWIRTDSLEPKYPQGSVALIKNTHFEFAG- 192 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 193 AIYAIDYDGQTILKRVFNDPTG-IRLISLNKKYSDKFIPHQEEPKVIGRVM 242 >gi|254245084|ref|ZP_04938406.1| hypothetical protein PA2G_05970 [Pseudomonas aeruginosa 2192] gi|126198462|gb|EAZ62525.1| hypothetical protein PA2G_05970 [Pseudomonas aeruginosa 2192] Length = 265 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 63/236 (26%), Gaps = 39/236 (16%) Query: 10 WEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE- 67 +AI + LT G+AR+ G+ S + + E KI Sbjct: 36 LKAIYQQKRHELGLTQEGIARRLGITQGSLSHYLNGRN-----ALNAEFAVKIAELLQVA 90 Query: 68 -----------------------TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + + + + P++ + +G Sbjct: 91 VGSFSPRLEEEITRMIMALPAKGRRQEREASNVTLALQPHRSPRRYPVISWVAAGERAES 150 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI- 163 P G + E + I P + G +++ Sbjct: 151 PDLH-PPGVADEWLPSTENAGANGYWLIILGDSMSSP-----TPPSFPPGTPILVQPEGF 204 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G + K G+ K + G L+ LN Y ++ D E I R++ Sbjct: 205 DLISGKYYVAKHSDGETTFKQYVYDAGVKY-LVPLNKAYRTLEMD-DDWEIIGRVI 258 >gi|325453307|gb|ADZ13610.1| protein umuD [Cronobacter phage ENT39118] Length = 145 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 6/132 (4%) Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSMLP 149 L +P + F + + G + + + A + + SM Sbjct: 4 HPLVWPVTPVNIPFYADLISAGFPSPAADYIDSGIDLVSHLIAHPSSTYVLRVAGDSMRD 63 Query: 150 L-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TV 207 G +L+++ ++ D ++ G+ K L++ L + N YP Sbjct: 64 AGILDGSLLLVDFSLHAKHNDIVV-ANIGGEFTVKRLVTYP--VAQLRAENPAYPPIAVY 120 Query: 208 EMSDIEWIARIL 219 + D+E + ++ Sbjct: 121 DADDLEIVGVVI 132 >gi|311695227|gb|ADP98100.1| LexA repressor [marine bacterium HP15] Length = 202 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 61/207 (29%), Gaps = 31/207 (14%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + I R + P+ A L S N ++ E + + Sbjct: 7 QSQVLDIIRRYVDETGYPPTRAEIAAELGFRSANAAE-------------EHLRALARK- 52 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 G + G G G+ E Sbjct: 53 --------------GAIEMVPGASRGIRLPEAEEDLGLPVIGQVAAGSPILAQEHIEDHC 98 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + D + + SM + GD+L ++S V+ G ++ + ++ K Sbjct: 99 TLQPEFFSPSADYLLRVRGMSMKDIGILDGDLLAVHSTQDVHNGQVVVAR-VGDEVTVKR 157 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD 211 + G + L++ N + V++++ Sbjct: 158 F-RKEGSKVYLIAENEEFAPIEVDLTE 183 >gi|289423764|ref|ZP_06425559.1| cI-like protein [Peptostreptococcus anaerobius 653-L] gi|289155803|gb|EFD04473.1| cI-like protein [Peptostreptococcus anaerobius 653-L] Length = 226 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 64/228 (28%), Gaps = 17/228 (7%) Query: 6 HKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K+I+ + + +++ L++ ++ S + + + IF I A Sbjct: 2 EKQIFISRLKLAMKTRHISQYKLSKLTKINKGSLSSYMSGKYLPKP-----DKIFIIADA 56 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEI 123 N L+ K E L S P + +I Sbjct: 57 LNINPDWLMCNSEEMELLETYKSSEPTSLNIHSYPLISGSVSAGIPDLIDPQEEFDYIDI 116 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDI 180 G Y + K SM G +++ + GD ++ Sbjct: 117 PDSMLGKYKSRKDMVVMKVNGESMNRTIPDGANILVARDYDIKSISTGDIVVFSHNYS-Y 175 Query: 181 VAKVLISRRGRS---IDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222 K + + S + C+ + ++ I ++++ S Sbjct: 176 SVKRFTNDKKNKRFIFSPESYDDCFKDLIISYDNSQELILIGKVVFYS 223 >gi|319896743|ref|YP_004134936.1| hypothetical protein HIBPF04060 [Haemophilus influenzae F3031] gi|317432245|emb|CBY80597.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 322 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 31/256 (12%), Positives = 70/256 (27%), Gaps = 48/256 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ S E + + + + A G+ S K G R P I + Sbjct: 68 MTTLS-----ERLKALLVEKGINQTEFANMIGIAQPSMQKIL----AGETRNPR--KIVE 116 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94 I T LL + +T + + + L Sbjct: 117 IAKELGTTPDYLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLQKQQVSLK 176 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQDT 145 P+ F P + + Sbjct: 177 TKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFNE 236 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PV 204 SM P+ K D++ +++ + G+ + + ++ + L +++++ N Sbjct: 237 SMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNVVAENERVGSS 296 Query: 205 DTV-EMSDIEWIARIL 219 + ++S + + R + Sbjct: 297 FEIDDLSRLNVLGRCV 312 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 11/79 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ E + + N+T + LA G + + + + + R +I + Sbjct: 1 MTTL-----GERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49 Query: 61 ILAATNETICQLLDLPFSD 79 I A L Sbjct: 50 IANALGVDPNWLKYGSTKM 68 >gi|307719870|ref|YP_003875402.1| transcriptional repressor [Spirochaeta thermophila DSM 6192] gi|306533595|gb|ADN03129.1| transcriptional repressor [Spirochaeta thermophila DSM 6192] Length = 201 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 34/217 (15%) Query: 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K++ I R E H + +AR ++ + E Sbjct: 9 QKEVLSFIQRFRELHGYVPSYREIARHFSVNVRAIYDILNALKEK--------------- 53 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + L + + V VPE Sbjct: 54 --GYVRHSPHKSRALEIVEEDPPPVVYLPLVGEVAAGRPL-----LAEEHIEGEVVVPES 106 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P G + + + SM KGD+ I+ GD ++ Sbjct: 107 FLPRGG-----GRFFVLRVKGESMEGAGILKGDLAIIREQDWAVDGDIVVALLEEN-ATL 160 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L S + YP + ++ + +++ Sbjct: 161 KRFFKEK-HRIRLESSHPSYPPIY--TTQVKILGKLV 194 >gi|121604820|ref|YP_982149.1| LexA repressor [Polaromonas naphthalenivorans CJ2] gi|171769293|sp|A1VNK0|LEXA_POLNA RecName: Full=LexA repressor gi|120593789|gb|ABM37228.1| SOS-response transcriptional repressor, LexA [Polaromonas naphthalenivorans CJ2] Length = 234 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 16/214 (7%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +I E I + P+ A L S N ++ +++ Sbjct: 15 PKLTARQAQILELIRNAIAQTGAPPTRAEIAAELGFRSPNAAEEH----------LKALA 64 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTV 118 K + +D + + G G+ Sbjct: 65 KKGVIELVSGTSRGIRLRTDSLQALNESRISQFSPPVQRLEQLTLPLVGRVAAGSPILAQ 124 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E Q D K + SM + GD+L + A + G ++ + Sbjct: 125 EHIERTYFFESRLFEQQPDYLLKVRGMSMRDIGIMDGDLLAVKQAREAKNGQIVVAR-LG 183 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K I+L+S N + V+ + Sbjct: 184 DEVTVKRFHR-NQHLIELLSENPDFKPIVVQPGE 216 >gi|330875013|gb|EGH09162.1| LexA repressor [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963587|gb|EGH63847.1| LexA repressor [Pseudomonas syringae pv. actinidiae str. M302091] Length = 202 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 45 --KHIVALTEAGLIEVVAHQARGIRLLNTEPRPELLEIPVLGRV-----AAGAPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 98 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + + L+ N Y V Sbjct: 154 D-GEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 187 >gi|264678802|ref|YP_003278709.1| prophage repressor [Comamonas testosteroni CNB-2] gi|262209315|gb|ACY33413.1| putative prophage repressor [Comamonas testosteroni CNB-2] Length = 179 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 5/103 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + SM P +++GD +I++ +++ G + K + Sbjct: 70 DAHDWLITSDKHSKETFVLTIRGNSMEPDFKEGDAVIIDPSVKPRPGSFVAAKNGREEAT 129 Query: 182 AKVLISR-----RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R +L+ LN YP + IE I ++ Sbjct: 130 FKKYRPRSIDVLGNEVFELVPLNEDYPTMRSDEQPIEIIGTMV 172 >gi|331092945|ref|ZP_08341450.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022479|gb|EGI02536.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6] Length = 202 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 45 --KHIVALTEAGLIEVVPHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 98 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + + L+ N Y V Sbjct: 154 D-GEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 187 >gi|68249874|ref|YP_248986.1| hypothetical protein NTHI1517 [Haemophilus influenzae 86-028NP] gi|68058073|gb|AAX88326.1| hypothetical protein NTHI1517 [Haemophilus influenzae 86-028NP] Length = 322 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 48/256 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT S E + + + + A G+ S K G R P I + Sbjct: 68 MTKLS-----ERLKALLVEKGINQTEFANMIGIAQPSMQKIL----AGETRNPR--KIVE 116 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94 I T LL + +T + + + L Sbjct: 117 IAKELGTTPDYLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLHKQQISLK 176 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQDT 145 P+ F V P + + Sbjct: 177 TKPTEEWVFALDVNRLAETDIINVHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFNE 236 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PV 204 SM P+ K D++ +++ + G+ + + ++ + L ++ ++ N Sbjct: 237 SMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGSS 296 Query: 205 DTV-EMSDIEWIARIL 219 + ++S + + R + Sbjct: 297 FEIDDLSRLNVLGRCV 312 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 11/79 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ E + + N+T + LA G + + + + + R +I + Sbjct: 1 MTTL-----GERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49 Query: 61 ILAATNETICQLLDLPFSD 79 I A L Sbjct: 50 IANALGVDPNWLKYGSTKM 68 >gi|114707513|ref|ZP_01440409.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein [Fulvimarina pelagi HTCC2506] gi|114537072|gb|EAU40200.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein [Fulvimarina pelagi HTCC2506] Length = 183 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 12/179 (6%) Query: 55 TESIFKILAATNETICQLLDLPF-SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +++ KI AT ++ L + T+ ++ P++ + G Sbjct: 1 MDALVKISEATGVSMDWLCTGSGAREHLTSLTLSRDEPIMVDEGRVAIVPRIGTRADAGP 60 Query: 114 K-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + + SMLP ++ GD ++++ I Sbjct: 61 GALVQIEDDDVSYFGFRSAWLRAQGVEPKAVRLLDIHGDSMLPTFKDGDTALVDTGINRV 120 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI---EWIARILWA 221 R+ G ++ K +I +R S+ L S N Y + V ++ R+ WA Sbjct: 121 VDSRIYAIVFAGLLIVKRVILKRDGSLILRSDNRDVYEDEMVPSGEVSDLHVAGRVFWA 179 >gi|323190487|gb|EFZ75761.1| helix-turn-helix family protein [Escherichia coli RN587/1] Length = 238 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 15/211 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I + LT +A+ G+ S K + + P E+++ + + Sbjct: 17 NTISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSK-----PDGENLYLLSKLLS 71 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ +L +T + + + P + + +P I + Sbjct: 72 KSPEWILYGKDCHDKTDDLRLNQYPYISDNIARLPVLTWEQAGYWDMSCPVTKIPGINNW 131 Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRL-LIKPRT 177 + + + +M LP G +++ G + + T Sbjct: 132 VDVMTKTAENSFLLHVEGDAMTNSNGLPTIPDGSTVLITPCSSNIRELVGKIILIQLEGT 191 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ K + I L+SLN Y + Sbjct: 192 PNVTLKKVAIDGPN-IYLLSLNPLYKPIELN 221 >gi|293395287|ref|ZP_06639572.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291422244|gb|EFE95488.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 248 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 62/240 (25%), Gaps = 31/240 (12%) Query: 11 EAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + R+ + +R + ++ + R +I A + Sbjct: 9 NNLRDLMARYARNGINQHEFSRLVESSAPTLSQI---TGDKSCRNLGDNLARRIEARLSL 65 Query: 68 TICQLLDLPF--------------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 L K F G+ Sbjct: 66 PTGWLDVFHEKSLARPFENVAAGSDFQPARLKPVVWEETEQDREEFVEIPLLDIDFSAGD 125 Query: 114 K-WNTVGVPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 ++ V + Y + + +SM P + GD++ +N+ Sbjct: 126 GCYDIVDLEAFSLIFRRYYLHKMGIPVNAARIIRISGSSMEPRLQDGDVVGINTDDTRIR 185 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDIEWIARILWAS 222 + + K+LI + + + SLN Y + + + + R+ W+S Sbjct: 186 EGKTYAIRHGNLLRVKILIEQPDGGVIIRSLNREEYQDEQLSYQQRKEQLIVLGRVFWSS 245 >gi|319787765|ref|YP_004147240.1| transcriptional repressor, LexA family [Pseudoxanthomonas suwonensis 11-1] gi|317466277|gb|ADV28009.1| transcriptional repressor, LexA family [Pseudoxanthomonas suwonensis 11-1] Length = 212 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 3/90 (3%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + D + Q SM GD++ ++ + G ++ + G++ Sbjct: 110 EALWLDRRLFSPRPDYLLRVQGDSMIEDGILDGDLVGVHRTPEARDGQTVVARVD-GELT 168 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L I L+ N + V Sbjct: 169 IKRLQR-GADRIRLLPRNPAHAPIEVHPGQ 197 >gi|300727303|ref|ZP_07060717.1| protein UmuD [Prevotella bryantii B14] gi|299775347|gb|EFI71943.1| protein UmuD [Prevotella bryantii B14] Length = 144 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 5/103 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + + + SM GDI +++ +++ GD ++ + Sbjct: 37 ETLDFNRDLIRNPEATFYGRVEGNSMIEAGINDGDIAVIDRSVEAQHGDIVVG-YINDEF 95 Query: 181 VAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILW 220 K L R+ I+L+ N + ++ D E ++W Sbjct: 96 TIKYLDLQHRKDGYIELLPANKDFKPIRIDPDDRFEVWGVVIW 138 >gi|89093206|ref|ZP_01166156.1| LexA repressor [Oceanospirillum sp. MED92] gi|89082502|gb|EAR61724.1| LexA repressor [Oceanospirillum sp. MED92] Length = 200 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 35/212 (16%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + I R P + +AR G S N ++ +++ K Sbjct: 7 QTEVLDCIKRHIGETGYPPTRADIARDLGFK--SANAAEEH----------LKALAK--- 51 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 G + G G G+ E Sbjct: 52 ---------------KGAIEIIPGTSRGIRVPELEEETGLPIVGQVAAGSPILAQEHVED 96 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + D + + TSM + GD+L ++ Q G+ ++ + ++ Sbjct: 97 HCTISSDFFHPKADYLLRVKGTSMKDIGIMDGDLLAVHQCQQARDGEIVVARLD-DEVTV 155 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 K + G + L++ N + V++S+ E Sbjct: 156 KRF-KQEGNIVYLIAENEEFEPIVVDLSEQEI 186 >gi|326795507|ref|YP_004313327.1| SOS-response transcriptional repressor, LexA [Marinomonas mediterranea MMB-1] gi|326546271|gb|ADZ91491.1| SOS-response transcriptional repressor, LexA [Marinomonas mediterranea MMB-1] Length = 207 Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 52/216 (24%), Gaps = 33/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + E I + P + +A + G R P+ Sbjct: 1 MIKLTKRQSDVLETIRQHISETGFPPTRAEIAARLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K L+ L G G G Sbjct: 44 EEHLKALSKKGAIEMLSGASRGIRLINETPAGANDSDL--------GLPVVGKVAAGAPI 95 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 D SM + GD+L ++ V G ++ + Sbjct: 96 LAQENVATHISVPPSMFSPKADYLLSVSGMSMKDVGIMDGDLLAVHKTHAVRNGQIVVAR 155 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K + G + L++ N + V++ Sbjct: 156 I-GEEVTVKRFEKK-GSKVRLIAENTEFDDILVDLE 189 >gi|326565740|gb|EGE15902.1| peptidase S24-like protein [Moraxella catarrhalis BC1] Length = 228 Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 57/225 (25%), Gaps = 17/225 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + + PS A KA P + + + + R + + + L + Sbjct: 2 FLSHLLNAQGVMPSERA-KADQFPKMIRRYSKG--QAKPRNDKMKLLTQCLGVPITWLDY 58 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGVPEIRSPHN-- 128 + + + F F G P Sbjct: 59 GEGEMTKNNDKLTPITEWDDSTPLDDDEAEIPFYKDIAFACGYGAVNGDAPLEGRKLRMG 118 Query: 129 -----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + D SM P + GD + ++ + R+ + K Sbjct: 119 RRTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCK 178 Query: 184 VLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 L + ++S N +P + + E I + S Sbjct: 179 RLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 223 >gi|254498799|ref|ZP_05111510.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella drancourtii LLAP12] gi|254351963|gb|EET10787.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella drancourtii LLAP12] Length = 185 Score = 74.4 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + SM + GD+LI++ +++ G ++ Sbjct: 75 GDDYID--RYLDLNQQLVQHPAATFIVTATGDSMTDVGIHSGDMLIVDKSLEAQHGKIVI 132 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L R + L+ N Y + I ++ Sbjct: 133 AALN-GELTVKRLSKIR-GRVQLLPENPRYKPIDITDEQDLVIWGVV 177 >gi|330962394|gb|EGH62654.1| LexA repressor [Pseudomonas syringae pv. maculicola str. ES4326] Length = 202 Score = 74.4 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------K 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I + A + + + E + + + + Sbjct: 46 HIVALAEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRVAAGAPIGPDLDIHSTLHLD 105 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + Q SM GD++ ++ Q + G ++ + Sbjct: 106 RGTFTRVPD------------YLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + + L+ N Y V Sbjct: 154 D-GEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 187 >gi|146282101|ref|YP_001172254.1| LexA repressor [Pseudomonas stutzeri A1501] gi|145570306|gb|ABP79412.1| LexA repressor [Pseudomonas stutzeri A1501] Length = 145 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 5/124 (4%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 P G G G E + + D + SM + G Sbjct: 16 PAPAETGLPIIGRVAAGAPILAQQHVEESCQISPAFFHPRADYLLRVHGMSMKDIGIYDG 75 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DI 212 D+L +++ + G ++ + ++ K G+ + L++ N + V++ ++ Sbjct: 76 DLLAVHTTREARNGQIVVAR-VGDEVTVKRFKRD-GKKVWLLAENPEFAPIEVDLEHQEL 133 Query: 213 EWIA 216 Sbjct: 134 VIEG 137 >gi|221135031|ref|ZP_03561334.1| LexA repressor [Glaciecola sp. HTCC2999] Length = 207 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 37/225 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I + P + +AR+ G E + + + Sbjct: 1 MRPLTPRQQEVLDLIKAKMLDTGMPPTRAEIARQLGFKSP-------NAAEEHLKALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + +ILA T + ++ + G G G Sbjct: 54 GVIEILAGT-------------------SRGIKLNIPLDDTPEELGLPLIGRVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ I V+ G ++ + Sbjct: 95 AQEHVESHYQVDPNLFHPQADFLLRVNGMSMKDIGILDGDLLAVHRTIDVHNGQVVVAR- 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIA 216 D+ K L + G+ + L + N + V++++ IE IA Sbjct: 154 VGEDVTVKRL-EKNGQHVLLHAENEDFDPIKVDLAEEPFNIEGIA 197 >gi|291285761|ref|YP_003502579.1| putative regulatory protein [Escherichia coli O55:H7 str. CB9615] gi|290765634|gb|ADD59595.1| Putative regulatory protein [Escherichia coli O55:H7 str. CB9615] gi|320199709|gb|EFW74298.1| regulatory protein cI [Escherichia coli EC4100B] gi|323969504|gb|EGB64796.1| peptidase S24 [Escherichia coli TA007] Length = 215 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 17/210 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79 + LA G+D + ++ + G+ + + +++ I + I L F Sbjct: 4 ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDFKSNTVCK 59 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136 +E + + +G+ G+ + + E R+ + Sbjct: 60 NSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P GD++ ++ +I GD + + I K L + ++ Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178 Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223 S N Y + ++L SQ Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207 >gi|153004966|ref|YP_001379291.1| SOS-response transcriptional repressor LexA [Anaeromyxobacter sp. Fw109-5] gi|166224551|sp|A7HC61|LEXA_ANADF RecName: Full=LexA repressor gi|152028539|gb|ABS26307.1| SOS-response transcriptional repressor, LexA [Anaeromyxobacter sp. Fw109-5] Length = 231 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 57/228 (25%), Gaps = 13/228 (5%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++ I R E + P+ + + T N + T Sbjct: 1 MDALTDRQLEVLRFIARQIEDNGYPPTIREIGEALDIRST--NGVNDHLKALERKGFLTR 58 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K A + + + + + P G G Sbjct: 59 DPVKSRALIPTPQAREVLGGGARASNVVPFTRTPAVGLKPAGRLVEIPILGRVAAGQPIL 118 Query: 117 TVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIK 174 E + + + + Q SM+ GD + + + GD ++ Sbjct: 119 AQERVEDTVQVDSFLLGTNKKVYGLRVQGDSMIGDGILPGDYIFVKKQLHAEDGDIVVAM 178 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 + K + G + N V SD + ++ Sbjct: 179 ID-EEATVKRVYF-EGDRVRFQPSNPRMAPIYVRGSDFRTTMILGVVV 224 >gi|313498056|gb|ADR59422.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 234 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 16/202 (7%) Query: 10 WEAIDR-MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 W A+ R E LT LA + G+ S + R P ES+ + Sbjct: 20 WIALVRDRMEELGLTQEQLAERVGVSQGSVGHWVN-----KRRQPKIESMNRTFVEIGMP 74 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRS 125 + L ++ + + +P W+ + E Sbjct: 75 HY-NVSLQLRIQGQVGEERSVYEIADDDELDLMRYIVCFRYPV-LGWSELDAATAVEPAV 132 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 Y Q + ++ +M + +G ++++ ++ G ++ + + Sbjct: 133 FEQTDYLAQGKAFWLTVENDAMSAVSGRSVPQGMRMLVDPGVEAEAGRLVIARQPGKPAI 192 Query: 182 AKVLISRRGRSIDLMSLNCCYP 203 + L G+ L +LN YP Sbjct: 193 FRELAEEGGQRY-LKALNSNYP 213 >gi|330951526|gb|EGH51786.1| peptidase S24, S26A and S26B [Pseudomonas syringae Cit 7] Length = 201 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 44/178 (24%), Gaps = 10/178 (5%) Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 RW T K + ++ + G + + Sbjct: 16 RWLRTGEGPKHPNECANENTGGDTRVIIHQARNVSRGDVEIQIFMEAESTQGLGKTVLAE 75 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + +P + GI SM + G IL ++ + Sbjct: 76 APG--QKIRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGE 131 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 + G + + L + L S N YP + D I + I W S Sbjct: 132 IYALEHGGILRVRYLYRLPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 189 >gi|220936308|ref|YP_002515207.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7] gi|219997618|gb|ACL74220.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7] Length = 154 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 2/91 (2%) Query: 129 GIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + ++ + + SM+ + GDI+++ G ++ + K Sbjct: 57 PAHMVRRNTYALRVRGHSMIDDNIQDGDIIVVERRQSAENGQTVVAMINGEQVTLKKFYV 116 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R I L N + +IE + + Sbjct: 117 EREG-IRLQPANPDMEPIILRNEEIEILGIV 146 >gi|71899794|ref|ZP_00681945.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] gi|71730489|gb|EAO32569.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] Length = 278 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 62/214 (28%), Gaps = 23/214 (10%) Query: 17 AERHNLTPSGL-ARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 E+ +T A K G PT ++ + KI + + Sbjct: 65 LEKSGITRRQDQAEKLGGLFSPTYISQFLDG------KHIVDNVAKKISESLGYDSNWMD 118 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN----- 128 + + + E P G G PE+ Sbjct: 119 RPQWYEDEQIFSQYIEATP---QPGYVLFKLFEGAAGMGTGIRNQDYPEVMRTMEVAEWE 175 Query: 129 -----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 G + + SM PL GDI+ ++++I GD + + K Sbjct: 176 VRKKLGFLPSPGRIQMITGRGPSMRPLIEDGDIVWIDTSIDYFNGDDYYLINYGDETQIK 235 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +L R + ++S+N + E ++I + Sbjct: 236 MLQRRIDG-LYVVSVNPEFKEWRCEPNEIFIRGK 268 >gi|209363835|ref|YP_001423989.2| repressor protein C2 [Coxiella burnetii Dugway 5J108-111] gi|207081768|gb|ABS77587.2| repressor protein C2 [Coxiella burnetii Dugway 5J108-111] Length = 238 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 19/210 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S + + ++ S LAR+ + ++ G+N P +I Sbjct: 23 MASLS-----SNLKTLMTSVHINASELARRTEIAQPIIHRL----STGQNTNPKLATIKP 73 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118 I I QL+ + + P S P + V Sbjct: 74 IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 133 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + + Q +M PL+ G +I+ + D ++++ + Sbjct: 134 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 187 Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 + + +I+ L SLN V Sbjct: 188 PEARLRQIITEGNDRY-LKSLNPELEKLEV 216 >gi|237806922|ref|YP_002891362.1| SOS-response transcriptional repressor, LexA [Tolumonas auensis DSM 9187] gi|259494480|sp|C4L7X7|LEXA_TOLAT RecName: Full=LexA repressor gi|237499183|gb|ACQ91776.1| SOS-response transcriptional repressor, LexA [Tolumonas auensis DSM 9187] Length = 206 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ I ++ + P + +A + G E + + + Sbjct: 1 MKQLTPRQAEVLALIRSAVQQTGMPPTRAEIASELGFKSA-------NAAEEHLKALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + +++ T + I LL P G G G Sbjct: 54 GVIRMMPGT---------------------SRGIQLLTDEPEEDEGLPLIGRVAAGEPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E +G D + SM + GD+L ++ Q N G ++ + Sbjct: 93 AQQHIETHYQIDGSLFHPRADFLLRVHGMSMKNIGILDGDLLAVHKTTQANNGQVVVARV 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K + G + L+ N V+++ Sbjct: 153 GDDEVTVKRFERK-GHIVQLLPENEELQPIVVDLTQ 187 >gi|94310919|ref|YP_584129.1| LexA repressor [Cupriavidus metallidurans CH34] gi|48474945|sp|Q9AGM5|LEXA_RALEU RecName: Full=LexA repressor gi|123383747|sp|Q1LLW6|LEXA_RALME RecName: Full=LexA repressor gi|13183716|gb|AAK15316.1|AF330820_1 LexA [Cupriavidus necator] gi|93354771|gb|ABF08860.1| DNA-binding transcriptional repressor of SOS regulon [Cupriavidus metallidurans CH34] Length = 218 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 21/216 (9%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++I++ I P + +A + G E R + + Sbjct: 1 MATLTPRQQQIFDLIRDTIRNTGFPPTRAEIAAEFGFSSP-------NSAEEHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ + I + S+ L P G G+ Sbjct: 54 GVIELTPGASRGIRLKVTRSDSERPDQFS-------LPMPGVLQLTLPLVGRVAAGSPIL 106 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + D + + SM GD+L + A + G ++ + Sbjct: 107 AAEHIDRQYQVDASVFDERPDYLLRVRGLSMRDAGILDGDLLAVKKASEAANGKVVVAR- 165 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K L R G +I+L++ N + + Sbjct: 166 LGDDVTVKRLKKR-GDTIELIAENPDFQNIVLHAGR 200 >gi|324117929|gb|EGC11828.1| peptidase S24 [Escherichia coli E1167] Length = 215 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 17/210 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79 + LA G+D + ++ + G+ + + +++ I + I L F Sbjct: 4 ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDFKSNTVCK 59 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136 +E + + +G+ G+ + + E R+ + Sbjct: 60 NSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P GD++ ++ +I GD + + I K L + ++ Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178 Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223 S N Y + ++L SQ Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207 >gi|289423964|ref|ZP_06425757.1| hypothetical phagelike protein [Peptostreptococcus anaerobius 653-L] gi|289155741|gb|EFD04413.1| hypothetical phagelike protein [Peptostreptococcus anaerobius 653-L] Length = 253 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 63/219 (28%), Gaps = 23/219 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I LT L + G + NK + +E R +I ++ N Sbjct: 41 KRIKEKRLELGLTQEELGKMIGTQRAAVNKYESGLVENMKRS----TIKQLSLIFNVDPK 96 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L+ + T + +G +T + I G Sbjct: 97 WLMAFDIDEINTGNNHNEYRMFPVSISAGCLEDI--------EAIDTYDIVTIADEIMGK 148 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILN----SAIQVNCGDRLLIKPRTGDIVAKVLI 186 YA + K SM + G ++++ ++ D ++ G K + Sbjct: 149 YAGRKGIILLKVNGESMNNVIPDGSYIVVDTYKTKVTDISDRDIVV-FSENGSYSVKRYV 207 Query: 187 SR-RGRSIDLMSLNCC--YPVDTV---EMSDIEWIARIL 219 + + + V S+++ I +++ Sbjct: 208 NDIANERFLFKPDSTDDTFTAIEVKYENSSNLKLIGKVV 246 >gi|254509256|ref|ZP_05121350.1| LexA repressor [Vibrio parahaemolyticus 16] gi|219547810|gb|EED24841.1| LexA repressor [Vibrio parahaemolyticus 16] Length = 206 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 63/214 (29%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KEAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 94 AQEHVETHYQVDPSMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVVVARV 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G ++ L + N + V++ Sbjct: 154 D-EDVTVKRLERK-GSTVLLHAENEEFEPIKVDL 185 >gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] Length = 342 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 10/163 (6%) Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +I I L + + KK K+ + F + Sbjct: 174 IEIAYELTPNIEDLRNKKLKEWENQYKKNKDYKNITRIDKYGNVAAGLPSFACEEVEKLL 233 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P ++ SM LY G+++I+ V GD ++ G Sbjct: 234 YLP------KKYFSSAYDYFALTINGDSMNKLYEDGEVIIVRKQNYVRNGDIIIACIL-G 286 Query: 179 DIVAKVLISRRGR---SIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + S N + +I + ++ Sbjct: 287 EATCKEYYFNEDEDKHELIPHSTNPKHKPQFYSDDEIMILGKV 329 Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + LT LA++ + ++ + + +E PS + + N + Sbjct: 8 NNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVE-----PSIYFLINLANEMNCS 60 >gi|116495434|ref|YP_807168.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|89953887|gb|ABD83418.1| putative phage transcriptional repressor [Lactobacillus casei phage Lca1] gi|116105584|gb|ABJ70726.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 227 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 69/221 (31%), Gaps = 17/221 (7%) Query: 14 DRMAERHN-LTPSGLARKA-G-LDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETI 69 D + + ++ ++++ G + + ++++ G+ PS E++ + N + Sbjct: 6 DYLRQLRGTMSLREASQRSHGRISHAAIAQAEKGINSHGKPFTPSAETLKEFAKLYNVST 65 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----GNKWNTVGVPEIR 124 +L+ + ++++ IP+ + + + V + Sbjct: 66 TKLMKMAGYIEKSSDLPSNAIPVSSEVADQPVMVYGEIQAGVAKWAKQDIIGQINVTKSF 125 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + G K SM G + + ++ GD + + + K Sbjct: 126 AKRYGA----KNLFALKVDGESMNREIPNGYTAVFSKDLEPESGDIVAVMIDSESATIKR 181 Query: 185 LISRR-GRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221 + S + + D + I + L+A Sbjct: 182 FRETSLAVMFEPSSWDPSFKPYVFPKDGIQDFKIIGKFLYA 222 >gi|238921803|ref|YP_002935317.1| repressor LexA [Eubacterium eligens ATCC 27750] gi|238873475|gb|ACR73183.1| repressor LexA [Eubacterium eligens ATCC 27750] Length = 179 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 38/159 (23%), Gaps = 3/159 (1%) Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + + G V P Sbjct: 11 ADPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENAVSAGTGNFLVDGP 70 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + SM P + G I + V G+ + G+ Sbjct: 71 KETVRIDESLLPEDTTFGVCISGDSMEPEFHDGQIAWVLQQESVANGEIGIFALN-GEAY 129 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 K L I L+SLN Y V E ++ ++L Sbjct: 130 IKKL-KDDKDGIFLISLNEKYAPIKVGENDRLDIFGKVL 167 >gi|52841463|ref|YP_095262.1| SOS response transcriptional regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296998|ref|YP_123367.1| hypothetical protein lpp1039 [Legionella pneumophila str. Paris] gi|52628574|gb|AAU27315.1| SOS response transcriptional regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750783|emb|CAH12190.1| hypothetical protein lpp1039 [Legionella pneumophila str. Paris] Length = 168 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + + SM GD L+++ +I+ + G ++ Sbjct: 58 ADDYIE--GYLDLNTKFIKHPSSTFVLQATGESMVEAGIFSGDWLLVDRSIEPSDGRIVI 115 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + G + L+ N + + I ++ Sbjct: 116 AAVN-GELTVKRLSKK-GGRVQLLPANPKFQPIDITEDSEMVIWGVV 160 >gi|332652440|ref|ZP_08418185.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332517586|gb|EGJ47189.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 275 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 56/240 (23%), Gaps = 30/240 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARK-----AGLDPTSFNKSKRFGIEGRN-------RWPSTE 56 I + + +R LT L + NK ++ R E Sbjct: 35 IGQRLSMERKRRGLTLEALRELLQNHGVEIQIQGLNKWEKGLTVPNAYQFIALCRILGIE 94 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + L L + + + G Sbjct: 95 DCMVGMEPVLLNDTGLRKLDEYKMDLIASGRYRPAPERYTETYIEMPVSTLAVSAGVGEF 154 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 D + SM P+Y G I+ + + G+ + Sbjct: 155 LDEGGFEMIRFPKSAVPGNADFGVRVNGDSMEPVYHDGQIVWVEKRDTLQPGEVGVFICN 214 Query: 177 TGDIVAKVLISRRG----------------RSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ KV + + I L+S N Y + SD + R++ Sbjct: 215 -GEGYLKVYDHQEPSEESKDDYVDSYGILHQQIILVSYNKLYSPKLISPSDTFFVVGRVI 273 >gi|218960805|ref|YP_001740580.1| hypothetical protein CLOAM0474 [Candidatus Cloacamonas acidaminovorans] gi|167729462|emb|CAO80373.1| hypothetical protein CLOAM0474 [Candidatus Cloacamonas acidaminovorans] Length = 242 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 65/232 (28%), Gaps = 29/232 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + + + L K G+ S ++ K R+P + + +++ A Sbjct: 4 NDIGSRLGMLIKAMKLKQYQFTEKFGISANSLDRYKNNE-----RFPDPQFLARLIDAGV 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------------- 109 L + ++ G F Sbjct: 59 NVNWLLRGEGSMFILAPWELGDDVRTTKKVQIVDGKPVLVNDFDTTYVRTSIFPIVAEIS 118 Query: 110 ---PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 P + + P I + SM P GDI+++ I + Sbjct: 119 AGSPMEVPEDMEPAESVEVPTRYIPFGTDNYVAFRINGQSMEPQILHGDIVLIKKQITWD 178 Query: 167 --CGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSDIEWI 215 G ++ TG I K + R + L LN Y ++ ++ +W+ Sbjct: 179 GLDGKICAVRYETG-ITLKRIQYDEARRGVALQPLNKDYRIEFIDADQSQWL 229 >gi|147724743|gb|ABQ45979.1| repressor [Linear cloning vector pJAZZ-OC] Length = 198 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 29/211 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + LT +A G+ +R + PS E + + + Sbjct: 5 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDV-----MPSLEIGLSLAKCLRKPV 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +LY S G TG + + Sbjct: 60 QW--------------------ILYGTESDPDRVPVIGTTETGPDRDWQPGEPANTERFL 99 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + Q T + Y+ GD+++++S++ + G+ +L+ G+I + L Sbjct: 100 PFVSQRNTVYALTVGNQIQRNYQPGDVILVDSSLTLVPGEDVLVCDNNGEITIQRLARYD 159 Query: 190 GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + L S N + + SD++++ +++ Sbjct: 160 EQHYYLDSANSQ---RVIHDKSDLQFVHQVV 187 >gi|83593475|ref|YP_427227.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576389|gb|ABC22940.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 196 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 34/218 (15%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + ++ LA+ G++ ++ +R + W E + +IL + Sbjct: 3 EIGKRIAEARKDQGMSQYALAKLLGVNQSTIAYYERGRNTPKP-WI-VEDLARILNVS-- 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +E P G G +P S Sbjct: 59 -------------AAFLLYGRERTDPLVPVVGRVGLGGQVTLAPAEPIGFTELPPGAS-- 103 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILI-----LNSAIQVNCGDRLLIKPRTGDIVA 182 ++ + ++ P+YR GDI+ ++ + + G +++ G + Sbjct: 104 -------SRTEALIVEGDALWPVYRAGDIVFFSEEDVHRSPEDLHGRDCVVRLADGTTLI 156 Query: 183 KVLISRRGRS-IDLMSLN-CCYPVDTVE-MSDIEWIAR 217 K++ R ++ L S N +E + I W+ R Sbjct: 157 KLIKRGRTKALFTLASYNAPDIEDIALEKAAPIRWVKR 194 >gi|15895107|ref|NP_348456.1| LexA repressor [Clostridium acetobutylicum ATCC 824] gi|25453102|sp|Q97I23|LEXA_CLOAB RecName: Full=LexA repressor gi|15024807|gb|AAK79796.1|AE007692_4 SOS regulatory protein LexA [Clostridium acetobutylicum ATCC 824] gi|325509246|gb|ADZ20882.1| LexA repressor [Clostridium acetobutylicum EA 2018] Length = 204 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 57/221 (25%), Gaps = 44/221 (19%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTES 57 +I+E I + PS + K GL TS ++ ++ G+ R P Sbjct: 11 QSEIYEFIRQEVLDKGYPPSVREICAKVGLSSTSTVHGHLSRLEKKGLIRRDPTKPRAIE 70 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + K + P + N + Sbjct: 71 LIK-------------------------DPISKREMIDIPIVGKVQAGQPILAVENIDDY 105 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + +P + K SM GD+ I+ GD ++ Sbjct: 106 LTIPLNFVRNTN------DLFILKISGNSMIEAGIYDGDLAIIEKTNYAQNGDIVVALI- 158 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 D K + I L N V+ ++ I + Sbjct: 159 ENDATIKRFFKEKD-KIRLQPENHTMDPIIVDNCEV--IGK 196 >gi|309776091|ref|ZP_07671082.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53] gi|308916042|gb|EFP61791.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53] Length = 198 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 34/218 (15%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + ++ +R N+T +A + G++ ++ ++ + R I K+ Sbjct: 2 QLKDLLNEYKKRMNVTNDYIAEQVGVNKSTVSRWMKEDT----RVMKPMVIEKLSYLLGI 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + LL + K LY + + + V + Sbjct: 58 DVESLLKGSDRFEKPVLGTAKAGYGLYAEENLT-------------GYEEVSKSDFYRG- 103 Query: 128 NGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 D + SM D++ + G +I ++ K +I Sbjct: 104 ---------DYFLRVCGDSMTGAHIHDQDLIYVKQCDDAESGTIAVILIANTEVTIKRVI 154 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219 + + L + N P + ++ I ++L Sbjct: 155 KK-DHLLILEAANPAVPARYFTYEEVQELPVKIIGKVL 191 >gi|327251986|gb|EGE63658.1| repressor protein CI [Escherichia coli STEC_7v] Length = 197 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 13/198 (6%) Query: 31 AGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL-----AATNETICQLLDLPFSDGRTTEK 85 G+ + + + KIL + ++ ++ + Sbjct: 1 MGMGQSGVGALFNGINALNAYNAAL--LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSL 58 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + + ++ + F G+ V + S ++ T Sbjct: 59 RSEYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPT--- 115 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 P + G +++++ V GD + + + K LI G+ L LN YP+ Sbjct: 116 GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMI 174 Query: 206 TVEMSDIEWIARILWASQ 223 + +++ ASQ Sbjct: 175 PCN-ESCSVVGKVI-ASQ 190 >gi|319792666|ref|YP_004154306.1| phage repressor [Variovorax paradoxus EPS] gi|315595129|gb|ADU36195.1| putative phage repressor [Variovorax paradoxus EPS] Length = 243 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 20/229 (8%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESIFKILAATNETICQ 71 R+ E+ P+ AR + F + + G+ R E+ +I A + Sbjct: 13 RLIEQERGGPAEAARIVNMSAAQFANLRDGAKDSKTGKPRGMRKETARRIEEAAKKPEGW 72 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-------FPTGNKWNTVGVPEIR 124 L + G P G + E Sbjct: 73 LDQEHQASTVPPSPAPSVSENEVVIVQYEVGGGMDTRGKLLLEAEPPGIIKSWKVDREWL 132 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + Y SM ++ GD L+++ + + + + K+ Sbjct: 133 QLNVRSYTSLANLCIVTGFGPSMKGMFNPGDPLLMDRGVNRVDHEGVYFFRVGDEGYIKI 192 Query: 185 LISRR---GRSIDL--MSLNC-CYPVDTVEMSD--IEWIARI--LWASQ 223 L G L +S N +P + + + I +I +W S+ Sbjct: 193 LQRVPEFNGPGFVLRVISKNKDDFPPYDISPKNPHLHIIGKILTVWKSE 241 >gi|315058094|gb|ADT72423.1| hypothetical protein CJS3_0682 [Campylobacter jejuni subsp. jejuni S3] Length = 142 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 11/130 (8%) Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-------QDTRHKTQDTSMLP 149 + FF++ G+ + + + + Q SM P Sbjct: 9 DMINIPFFENVRASAGSGAYNDEESTQALGLSKSFLRECFGLYSFINLSVILGQGDSMTP 68 Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 + L++ G+ + + ++ K L R + L+S N Y +E Sbjct: 69 TLPENCYLLIQQGEVAE-GEICVTRI-EDELYVKRLQKRP--KLKLLSDNKAYEPINLEG 124 Query: 210 SDIEWIARIL 219 + E + R++ Sbjct: 125 ENFEILGRVV 134 >gi|218442219|ref|YP_002380548.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC 7424] gi|218174947|gb|ACK73680.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC 7424] Length = 201 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 48/189 (25%), Gaps = 6/189 (3%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I PS + K + + Q + E + + Sbjct: 8 QQELYDWLCEYIRTSQHAPSIRQMMKAMNLRSPAPIQSRLERLRSKGYIDWTEGKARTIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153 + G G G E + + + SM L Sbjct: 68 ILHQPAVGIPIYGSIAAGGLVEPFTDIEEKLDLTSFFQQP-NWFALRVTGDSMIEDLITD 126 Query: 154 GDILIL---NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++I+ + + G+ + + K G + L N Y V + Sbjct: 127 GDMVIMRPLDPDENLKNGEIVAARVGGHGTTLKHYY-LEGEKVTLQPSNPNYRPIEVGLH 185 Query: 211 DIEWIARIL 219 ++E ++ Sbjct: 186 EVEIQGILV 194 >gi|309808149|ref|ZP_07702061.1| peptidase S24-like protein [Lactobacillus iners LactinV 01V1-a] gi|308168618|gb|EFO70724.1| peptidase S24-like protein [Lactobacillus iners LactinV 01V1-a] Length = 177 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 4/111 (3%) Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 G + D + SM P I+ + + G+ Sbjct: 69 AAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGE 125 Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + K + I L S+N Y + + +++ Sbjct: 126 IGIFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 176 >gi|126696785|ref|YP_001091671.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9301] gi|126543828|gb|ABO18070.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9301] Length = 205 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 23/198 (11%), Positives = 56/198 (28%), Gaps = 8/198 (4%) Query: 29 RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88 K + ++ + + PS + + + + Q + +E Sbjct: 7 DKLTVAQSALYGWIKDYMREYQHSPSIRQMMQAMGLKSPAPIQSRLKHLQEKGYISWQEG 66 Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 + L G G G +T + + + + SM+ Sbjct: 67 KARTLQIIDEVLEGVPIMGSVAAGGLIDTYSDVQENLDISEVLK-KKDIFALSVNGDSMI 125 Query: 149 PL-YRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 GD++++ + + G + K + GR I L + N Y Sbjct: 126 DAFIAHGDMVLMEPILDSYSLRNGMIVSALVPGLGTTLKYFFKK-GRQISLEAANPAYEP 184 Query: 205 DTVEMSDIEWIARI--LW 220 ++ + ++ +W Sbjct: 185 ILIDQDQVSIQGKLLAVW 202 >gi|323187631|gb|EFZ72938.1| peptidase S24-like family protein [Escherichia coli RN587/1] gi|325498373|gb|EGC96232.1| putative regulatory protein [Escherichia fergusonii ECD227] Length = 215 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 67/210 (31%), Gaps = 17/210 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79 + LA G+D + ++ + G+ + + +++ I + I L Sbjct: 4 ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDVKSNTVCK 59 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136 +E + + +G+ G+ + + E R+ + Sbjct: 60 NSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P GD++ ++ +I GD + + I K L + ++ Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178 Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223 S N Y + ++L SQ Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207 >gi|317505418|ref|ZP_07963339.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315663473|gb|EFV03219.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 256 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 28/236 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I+ ++++ +T L +K G +++ G + + +W ES+ + Sbjct: 19 KILSRIEELSKQEGITIGALEKKIGASKGVLSRAIAKGTDIQAKW--IESL--VENYPMY 74 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---------------G 112 + LL + ++ + L P + Sbjct: 75 STEWLLTGNGPMLKAATQESQVTAQLSTPTAKDRIPEAFRCLDALHFTHELIPLVSQKAA 134 Query: 113 NKWNTVGVPEIRSPHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDIL---ILNSAIQ 164 + S Y I D + SM P Y GDI+ I++++ Sbjct: 135 AGFGNADFAITESDVKEYYVIPKWRRQHVDFMIEVTGDSMQPKYNAGDIVGCTIIHNSGF 194 Query: 165 VNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + +I R ++ K L+ S+ +S N YP + +I IA ++ Sbjct: 195 IQWNRPHVIATREQGLLIKRLMPGTTANSLSAVSENIQYPPFDIPKDEITGIALVI 250 >gi|258592052|emb|CBE68357.1| LexA repressor [NC10 bacterium 'Dutch sediment'] Length = 197 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 58/185 (31%), Gaps = 7/185 (3%) Query: 40 KSKRFGIEGRNR---WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + F + R P+ I + + + L+ G T ++ + Sbjct: 9 QILNFIASYKARHGAPPTQREIARHVKIYIRGVQYHLERLERAGHLTRTPKRARAIDLRR 68 Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155 + G G + E P + + K Q SM GD Sbjct: 69 EQRATLTPLLGRVTAGRPVLSDEHIEASYPLPLEWTGSGKAFLLKVQGDSMRDARIFDGD 128 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 ++++ + + + G+ ++ ++ K ++ L N + +E ++ Sbjct: 129 LVLVTAQPEAHPGEIVV-AMIEDEVTVKRFQLDGA-TVILQPENEQFAPIRIENGERVKI 186 Query: 215 IARIL 219 + +++ Sbjct: 187 LGKVI 191 >gi|220917338|ref|YP_002492642.1| SOS-response transcriptional repressor, LexA [Anaeromyxobacter dehalogenans 2CP-1] gi|254809085|sp|B8JA57|LEXA_ANAD2 RecName: Full=LexA repressor gi|219955192|gb|ACL65576.1| SOS-response transcriptional repressor, LexA [Anaeromyxobacter dehalogenans 2CP-1] Length = 228 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 60/229 (26%), Gaps = 18/229 (7%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNK-SKRFGIEGRNRWPS 54 M + ++ I E H P+ + + T+ N K +G Sbjct: 1 MEGLTDRQLEVLRFIASQIEDHGYPPTIREIGEALDIRSTNGVNDHLKALERKGYLSRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +S I + + + + + P + Sbjct: 61 VKSRALIPTSAAREALGGGETGSNVVPLVRGPARPGSRMIEIPIVGRVAAGMPILAQERV 120 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLI 173 +TV V + + + Q SM+ GD + + + + G+ ++ Sbjct: 121 EDTVQVDA------FLLGTNKKVYGLRVQGDSMIGDGILPGDYVFVKKQLNADDGEIVVA 174 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 + K + G + N V SD + ++ Sbjct: 175 MID-DEATVKRVYF-EGDRVRFQPSNPRMAPIYVRHSDFRSTMILGVVV 221 >gi|9630498|ref|NP_046933.1| CB [Enterobacteria phage N15] gi|1184742|gb|AAB81655.1| repressor protein [Enterobacteria phage N15] gi|3192717|gb|AAC19070.1| gp38 [Enterobacteria phage N15] gi|89158281|gb|ABD62892.1| cB [Cloning vector pJAZZ-KA] gi|124491097|gb|ABN12903.1| CB [Cloning vector pN15E4] gi|124491104|gb|ABN12909.1| CB [Cloning vector pN15E6] gi|205318621|gb|ACI02337.1| CB [Linear cloning vector pJAZZ-OK] gi|269974867|gb|ACZ55231.1| phage repressor cB [Cloning vector pJAZZ-OCmin] Length = 202 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 29/211 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + LT +A G+ +R + PS E + + + Sbjct: 9 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDV-----MPSLEIGLSLAKCLRKPV 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +LY S G TG + + Sbjct: 64 QW--------------------ILYGTESDPDRVPVIGTTETGPDRDWQPGEPANTERFL 103 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + Q T + Y+ GD+++++S++ + G+ +L+ G+I + L Sbjct: 104 PFVSQRNTVYALTVGNQIQRNYQPGDVILVDSSLTLVPGEDVLVCDNNGEITIQRLARYD 163 Query: 190 GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + L S N + + SD++++ +++ Sbjct: 164 EQHYYLDSANSQ---RVIHDKSDLQFVHQVV 191 >gi|226940501|ref|YP_002795575.1| UmuD protein [Laribacter hongkongensis HLHK9] gi|226715428|gb|ACO74566.1| UmuD protein [Laribacter hongkongensis HLHK9] Length = 206 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLL 172 + V + ++ + + + SM GDIL+++ + + GD ++ Sbjct: 97 ADDYVE--DTLDLNHYLIDDAPSTFLVRAKGESMTGAHVFDGDILVVDKSRTPSSGDIVV 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L + G + L + N YP I ++ Sbjct: 155 AAI-EGEFTVKRLQRQ-GGRVILKAANPDYPDIVPSYEQELVIWGVV 199 >gi|320198552|gb|EFW73152.1| regulatory protein cI [Escherichia coli EC4100B] Length = 215 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 17/210 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79 + LA G+D + ++ + G+ + + +++ I + I L Sbjct: 4 ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDVKSNTVCK 59 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136 E + + +G+ G+ + + E R+ + Sbjct: 60 NSIGEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P GD++ ++ +I GD + + I K L + ++ Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178 Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223 S N Y + ++L SQ Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207 >gi|331269497|ref|YP_004395989.1| SOS-response transcriptional repressor, LexA [Clostridium botulinum BKT015925] gi|329126047|gb|AEB75992.1| SOS-response transcriptional repressor, LexA [Clostridium botulinum BKT015925] Length = 209 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 57/218 (26%), Gaps = 36/218 (16%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60 +I+E I + PS + + GL TS + + +G R ST+ Sbjct: 15 KQIEIYEFIKTQILQKGYPPSVREICKGVGLSSTSSVHSHLSKLEKKGLIRRDSTK---- 70 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 K+ + P + N +T + Sbjct: 71 -----------------PRTIEILKEPMIRKEMVNIPIVGKVTAGIPILAVENIEDTFPI 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P N K SM GD I+ + G+ ++ + Sbjct: 114 SLNFIPKN------KDLFILKVSGESMIEAGILDGDFAIIEKVDYASDGEIVVALI-ENE 166 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 K + I L N V+ D + + + Sbjct: 167 ATLKRFFKEKD-HIRLQPENQTMEPIIVK--DCKILGK 201 >gi|325272250|ref|ZP_08138668.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp. TJI-51] gi|324102622|gb|EGC00051.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp. TJI-51] Length = 142 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165 P G E + ++ I+ K + SM GD++I++ + Sbjct: 22 HVPAGFPSPAADHLEGHISLDELFDIRAPHVYLVKVEGDSMQGAGIYSGDLVIVDRGREA 81 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 GD ++ + V K L R + L S N YP + D + ++ S Sbjct: 82 EHGDIVIAAVNC-EPVCKRLHRR-DGVVILKSENPAYPARYIMEGDDFVVWGVVRYS 136 >gi|330830140|ref|YP_004393092.1| phage repressor [Aeromonas veronii B565] gi|328805276|gb|AEB50475.1| Phage repressor [Aeromonas veronii B565] Length = 144 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 14/138 (10%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 K IP+L + +G+ + I + Sbjct: 1 MLPGKRIPILSYVQAGNWREMCEQ---------ATTFDGNVEFVSASGEIGPFGFGLWLR 51 Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-----RGRSIDLMSL 198 SMLP +++GD++I++ GD ++ K + + K R +L+ L Sbjct: 52 GDSMLPQFKEGDLIIVDPDEAPQPGDYVVAKNGSNEATFKKYRPRGIDENGQEVFELVPL 111 Query: 199 NCCYPVDTVEMSDIEWIA 216 N YP + I+ I Sbjct: 112 NEDYPTMHSDRQHIQIIG 129 >gi|254427485|ref|ZP_05041192.1| LexA repressor [Alcanivorax sp. DG881] gi|196193654|gb|EDX88613.1| LexA repressor [Alcanivorax sp. DG881] Length = 204 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 55/214 (25%), Gaps = 33/214 (15%) Query: 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++ + I + T + +A G + R + K+ Sbjct: 9 QQQVLDCIRECLSDSGMAPTRAEIADIMGFQS-------KNAASDHLRALERKGYIKL-- 59 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + I LL G G G + E Sbjct: 60 -------------------HSDRSRGIQLLDNAYWGEEELPIVGRVAAGVPIEAIENVER 100 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P Q K Q SM+ GD++ + + G+ ++ + ++ Sbjct: 101 TVPVPQGLFKQRPTYLLKVQGDSMVDAGIFDGDLIAVRKSNVARTGEIVVARID-EEVTV 159 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 K L S L+ N Y V + Sbjct: 160 KTL-KLNKSSATLLPANEAYEPIKVPADQLIIEG 192 >gi|291525626|emb|CBK91213.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Eubacterium rectale DSM 17629] Length = 173 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 3/119 (2%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 G V P+ + + + SM P + G I + Sbjct: 44 IDIFENAVSAGTGSFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHDGQIAWVLQ 103 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 V G+ + G+ K L + + I L+SLN Y V E ++ ++L Sbjct: 104 QESVANGEIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYTPIKVGENDRLDIFGKVL 160 >gi|262192231|ref|ZP_06050389.1| SOS-response repressor and protease LexA [Vibrio cholerae CT 5369-93] gi|297581861|ref|ZP_06943782.1| LexA repressor [Vibrio cholerae RC385] gi|262031904|gb|EEY50484.1| SOS-response repressor and protease LexA [Vibrio cholerae CT 5369-93] gi|297533955|gb|EFH72795.1| LexA repressor [Vibrio cholerae RC385] Length = 209 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 97 AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G + L + N + V+++ Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189 >gi|70731140|ref|YP_260881.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345439|gb|AAY93045.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens Pf-5] Length = 262 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 70/246 (28%), Gaps = 38/246 (15%) Query: 7 KKIWEAIDRMAERHN--LTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K I+E A+ LT + +A G ++F++ + + E++ K+ Sbjct: 19 KAIYEQRKSAAKAAGRNLTQADVAEACGWSGQSAFSQYATGKVP-----LNVEALLKLAK 73 Query: 64 ATNETICQLLDL-----PFSDGRTTEKKEKEIPLLYFPPSGS-------GGFFDSGVFPT 111 A N ++ + K + + + F Sbjct: 74 ALNFDASEVSSRLISTVANVQQERIQPDIKLGTIETWDDATPLPDDEVYVPFLREVELAA 133 Query: 112 GNKWNTVGVPEIR------SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 G+ + + S + + SM P+ R G + +N+ Sbjct: 134 GSGRFVIEESDTAKLRFFKSDLRRNNVQFSNAKCVIVRGNSMFPVLRDGATVGVNTGKNS 193 Query: 166 NCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV-----EMSDIEWI 215 GD + G + K + + L S N +P + + I + Sbjct: 194 L-GDIVDGDLYAINHNGQLRVKQVYRLPTG-LRLRSFNRDEHPDEDYTFAEAQEQQISIL 251 Query: 216 ARILWA 221 + W Sbjct: 252 GHVFWW 257 >gi|15640124|ref|NP_229751.1| LexA repressor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587645|ref|ZP_01677408.1| LexA repressor [Vibrio cholerae 2740-80] gi|121727782|ref|ZP_01680858.1| LexA repressor [Vibrio cholerae V52] gi|147674841|ref|YP_001218323.1| LexA repressor [Vibrio cholerae O395] gi|153214612|ref|ZP_01949488.1| LexA repressor [Vibrio cholerae 1587] gi|153801685|ref|ZP_01956271.1| LexA repressor [Vibrio cholerae MZO-3] gi|153818212|ref|ZP_01970879.1| LexA repressor [Vibrio cholerae NCTC 8457] gi|153822131|ref|ZP_01974798.1| LexA repressor [Vibrio cholerae B33] gi|153826622|ref|ZP_01979289.1| LexA repressor [Vibrio cholerae MZO-2] gi|153829104|ref|ZP_01981771.1| LexA repressor [Vibrio cholerae 623-39] gi|227080328|ref|YP_002808879.1| LexA repressor [Vibrio cholerae M66-2] gi|229508375|ref|ZP_04397879.1| SOS-response repressor and protease LexA [Vibrio cholerae BX 330286] gi|229508943|ref|ZP_04398433.1| SOS-response repressor and protease LexA [Vibrio cholerae B33] gi|229515868|ref|ZP_04405326.1| SOS-response repressor and protease LexA [Vibrio cholerae TMA 21] gi|229517057|ref|ZP_04406503.1| SOS-response repressor and protease LexA [Vibrio cholerae RC9] gi|229520109|ref|ZP_04409537.1| SOS-response repressor and protease LexA [Vibrio cholerae TM 11079-80] gi|229524994|ref|ZP_04414399.1| SOS-response repressor and protease LexA [Vibrio cholerae bv. albensis VL426] gi|229527160|ref|ZP_04416554.1| SOS-response repressor and protease LexA [Vibrio cholerae 12129(1)] gi|229606650|ref|YP_002877298.1| LexA repressor [Vibrio cholerae MJ-1236] gi|254851478|ref|ZP_05240828.1| LexA repressor [Vibrio cholerae MO10] gi|255743948|ref|ZP_05417903.1| SOS-response repressor and protease LexA [Vibrio cholera CIRS 101] gi|262151323|ref|ZP_06028457.1| SOS-response repressor and protease LexA [Vibrio cholerae INDRE 91/1] gi|262167242|ref|ZP_06034953.1| SOS-response repressor and protease LexA [Vibrio cholerae RC27] gi|298501132|ref|ZP_07010932.1| LexA repressor [Vibrio cholerae MAK 757] gi|13431643|sp|Q9KVP9|LEXA_VIBCH RecName: Full=LexA repressor gi|172047512|sp|A5F4F6|LEXA_VIBC3 RecName: Full=LexA repressor gi|254809109|sp|C3LPT4|LEXA_VIBCM RecName: Full=LexA repressor gi|9654490|gb|AAF93270.1| LexA repressor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548086|gb|EAX58161.1| LexA repressor [Vibrio cholerae 2740-80] gi|121629906|gb|EAX62318.1| LexA repressor [Vibrio cholerae V52] gi|124115218|gb|EAY34038.1| LexA repressor [Vibrio cholerae 1587] gi|124122778|gb|EAY41521.1| LexA repressor [Vibrio cholerae MZO-3] gi|126511241|gb|EAZ73835.1| LexA repressor [Vibrio cholerae NCTC 8457] gi|126520337|gb|EAZ77560.1| LexA repressor [Vibrio cholerae B33] gi|146316724|gb|ABQ21263.1| LexA repressor [Vibrio cholerae O395] gi|148875432|gb|EDL73567.1| LexA repressor [Vibrio cholerae 623-39] gi|149739560|gb|EDM53784.1| LexA repressor [Vibrio cholerae MZO-2] gi|227008216|gb|ACP04428.1| LexA repressor [Vibrio cholerae M66-2] gi|227011906|gb|ACP08116.1| LexA repressor [Vibrio cholerae O395] gi|229335391|gb|EEO00874.1| SOS-response repressor and protease LexA [Vibrio cholerae 12129(1)] gi|229338575|gb|EEO03592.1| SOS-response repressor and protease LexA [Vibrio cholerae bv. albensis VL426] gi|229342897|gb|EEO07887.1| SOS-response repressor and protease LexA [Vibrio cholerae TM 11079-80] gi|229346120|gb|EEO11092.1| SOS-response repressor and protease LexA [Vibrio cholerae RC9] gi|229347131|gb|EEO12092.1| SOS-response repressor and protease LexA [Vibrio cholerae TMA 21] gi|229354060|gb|EEO18993.1| SOS-response repressor and protease LexA [Vibrio cholerae B33] gi|229354648|gb|EEO19570.1| SOS-response repressor and protease LexA [Vibrio cholerae BX 330286] gi|229369305|gb|ACQ59728.1| SOS-response repressor and protease LexA [Vibrio cholerae MJ-1236] gi|254847183|gb|EET25597.1| LexA repressor [Vibrio cholerae MO10] gi|255738431|gb|EET93821.1| SOS-response repressor and protease LexA [Vibrio cholera CIRS 101] gi|262024306|gb|EEY42996.1| SOS-response repressor and protease LexA [Vibrio cholerae RC27] gi|262030862|gb|EEY49492.1| SOS-response repressor and protease LexA [Vibrio cholerae INDRE 91/1] gi|297540166|gb|EFH76227.1| LexA repressor [Vibrio cholerae MAK 757] gi|327482999|gb|AEA77406.1| SOS-response repressor and protease LexA [Vibrio cholerae LMA3894-4] Length = 209 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 97 AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G + L + N + V+++ Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189 >gi|294788391|ref|ZP_06753634.1| repressor protein C2 [Simonsiella muelleri ATCC 29453] gi|294483822|gb|EFG31506.1| repressor protein C2 [Simonsiella muelleri ATCC 29453] Length = 220 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 60/212 (28%), Gaps = 10/212 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + +H L + LA A + S + R P +++ + Sbjct: 10 GKNLIYLMNKHGLNVTSLANAAKANQPSLFRIVNGES----RDPREDTLKPYAEYFGIEV 65 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--FDSGVFPTGNKWNTVGVPEIRSPH 127 L + + + P + + + S Sbjct: 66 ADLRTKDLTSTAHSNVEPVINLHGRIPVIEWTSIKDWQNMDINIKDIKEWRSTTREHSSK 125 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 ++ S + GDI++++ ++ G ++ + + + Sbjct: 126 TFALRVKGITMVRYGHKES----FEDGDIILVDPEREIINGSLVIAQIGNETELVFRKLY 181 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L +LN + +E+ D I ++ Sbjct: 182 IENGKMFLHALNPNWTEPLIELKDKSMIKGVV 213 >gi|70727393|ref|YP_254309.1| hypothetical protein SH2394 [Staphylococcus haemolyticus JCSC1435] gi|68448119|dbj|BAE05703.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 224 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 76/229 (33%), Gaps = 26/229 (11%) Query: 10 WEAIDRMAERHNLTPSGLARK------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I ++ ++ +T L+ A SF K K E P +++ ++ Sbjct: 4 GSRIKKLRKQKGMTLQQLSDDLHEQFPAKDKRNSFTKGKLSNWENDKSEPIAKTVSQLAT 63 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ L+ L + + Y S + VP+I Sbjct: 64 YFGVSMDYLIGLEDDIVPIEKIDKYYQVPYYGQVSAGNFETVEVDTK------ELEVPDI 117 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTG 178 + + SM + G +I++ ++N D L+++ G Sbjct: 118 AFNGRN----PKECIALQVNGDSMNKVLSNGSYIIIHDYRRNQDYRLNNNDILVLR-LGG 172 Query: 179 DIVAKVLISRRGR-SIDLMSLNCCYPVDTVE---MSDIEWIARILWASQ 223 + K + + +D +S + + +T + +IE I ++++ Q Sbjct: 173 EYTVKRVRRTETKLHLDPVSYSDEFKTNTYDIDSTDEIEVIGKVIYNYQ 221 >gi|299529267|ref|ZP_07042709.1| peptidase S24, S26A and S26B [Comamonas testosteroni S44] gi|298722745|gb|EFI63660.1| peptidase S24, S26A and S26B [Comamonas testosteroni S44] Length = 120 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%) Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G + + Q + + SM P YR G+ +++ +I+ G + Sbjct: 3 GGDDGYLVQDTTPDGWVEYWTGDPQAYALRIKGDSMHPRYRAGEFVVVTPSIEAQPGRDV 62 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++K G + K L RG I L+S+N Y T+ D+E + R+ Sbjct: 63 VVKLHDGKCLLKELNWIRGDEIQLLSINNGYAPMTISKEDVECVCRV 109 >gi|262404835|ref|ZP_06081389.1| SOS-response repressor and protease LexA [Vibrio sp. RC586] gi|262348919|gb|EEY98058.1| SOS-response repressor and protease LexA [Vibrio sp. RC586] Length = 209 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 97 AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G + L + N + V+++ Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189 >gi|256827991|ref|YP_003156719.1| peptidase S24 and S26 domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577167|gb|ACU88303.1| peptidase S24 and S26 domain protein [Desulfomicrobium baculatum DSM 4028] Length = 153 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + SM GD+L+++ + Q G ++ Sbjct: 44 ADDYIE--TALDLNTYLIRNPAATFMVRVSGDSMTGAGISDGDVLVVDRSEQPAHGKIVV 101 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L+ + G+++ L N CY TV + ++ Sbjct: 102 AVLD-GELTVKRLVMKNGQTL-LAPENPCYQPITVTEGQDLHVWGVV 146 >gi|15808003|ref|NP_285667.1| lexA repressor [Deinococcus radiodurans R1] gi|6460733|gb|AAF12438.1|AE001863_63 lexA repressor [Deinococcus radiodurans R1] Length = 220 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 34/218 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + I +A + T +A++ G+ + ++ + K+ Sbjct: 18 TRRSILQA--TLRLGAGATAGQVAQEVGITKQAISQ-------------QVNILRKL--- 59 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + G G G PE Sbjct: 60 ------------GYLQPAETRYGPLQVTDRARAALGEGLPIYGQIAAGIPALAEQSPEDF 107 Query: 125 SPH-NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR-LLIKPRTGDIV 181 +P + ++ D + + SM + GD +++ A +V+ G+ +++ P Sbjct: 108 TPSIEALLGLKAGDFLLRVRGESMTGIGVMDGDYVVVRPAPEVHDGEVAVVLVPGDNAAT 167 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L G+ I L S N P + ++ R++ Sbjct: 168 LKRLY-HFGQDILLTSENPAMPRLSFPAEQVQVQGRMV 204 >gi|194437246|ref|ZP_03069344.1| regulatory protein [Escherichia coli 101-1] gi|194423802|gb|EDX39791.1| regulatory protein [Escherichia coli 101-1] Length = 215 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 67/210 (31%), Gaps = 17/210 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79 + LA G+D + ++ + G+ + + +++ I + I L Sbjct: 4 ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDLKSNTVCK 59 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136 +E + + +G+ G+ + + E R+ + Sbjct: 60 NSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P GD++ ++ +I GD + + I K L + ++ Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178 Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223 S N Y + ++L SQ Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207 >gi|146310671|ref|YP_001175745.1| putative phage repressor [Enterobacter sp. 638] gi|145317547|gb|ABP59694.1| putative phage repressor [Enterobacter sp. 638] Length = 218 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 14/219 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S +W+ ++ A L+R + P + + R S I Sbjct: 9 SEPGVWKWLNAAAIPDQTNILALSRWLNVRPEWLEYGRNQAANDKEREAS------IPPE 62 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + D + + + +G G D + + + Sbjct: 63 SEWGSVEAWDDSTPVSDDEVEVPFFKDIEFACGAGRTGDEDYNGYK-------LRFSKST 115 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 G + SM P G + +N+ + ++ G K+ Sbjct: 116 LRRIGASTDGHSIICFPARGNSMEPNIPDGTTVAVNTEDKKIIDGKMYAISEDGWKRIKL 175 Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 L ++ + S N +P + + +IE I R+ W S Sbjct: 176 LYRTGPETVSIRSYNAAEHPPEEKPLGNIEVIGRVFWWS 214 >gi|27364582|ref|NP_760110.1| LexA repressor [Vibrio vulnificus CMCP6] gi|37678307|ref|NP_932916.1| LexA repressor [Vibrio vulnificus YJ016] gi|320154986|ref|YP_004187365.1| SOS-response repressor and protease LexA [Vibrio vulnificus MO6-24/O] gi|29427708|sp|Q8DD47|LEXA_VIBVU RecName: Full=LexA repressor gi|44888093|sp|Q7MQ85|LEXA_VIBVY RecName: Full=LexA repressor gi|27360701|gb|AAO09637.1| LexA repressor [Vibrio vulnificus CMCP6] gi|37197046|dbj|BAC92887.1| SOS-response transcriptional repressor [Vibrio vulnificus YJ016] gi|319930298|gb|ADV85162.1| SOS-response repressor and protease LexA [Vibrio vulnificus MO6-24/O] Length = 207 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 33/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIEVTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + I L + G G G Sbjct: 46 HLKALARK-----------QVIEIVPGASRGIRILLEEEAANDEPGLPLIGRVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E+ + D + SM + GD+L ++ V G ++ + Sbjct: 95 AQEHVEMHYQVDPSMFRPQADFLLRVHGESMKDIGIMDGDLLAVHKTQDVRNGQVVVAR- 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G ++ L + N + V++ Sbjct: 154 VEDDVTVKRLERK-GSTVLLHAENEEFAPIEVDL 186 >gi|146309913|ref|YP_001174987.1| LexA repressor [Enterobacter sp. 638] gi|166990801|sp|A4W5F6|LEXA_ENT38 RecName: Full=LexA repressor gi|145316789|gb|ABP58936.1| SOS-response transcriptional repressor, LexA [Enterobacter sp. 638] Length = 202 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVLEIVSGASRGIRLLVEEETGIPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPGMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++ L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNTVQLLPENSEFSPIVVDLRE 183 >gi|254242224|ref|ZP_04935546.1| hypothetical protein PA2G_02958 [Pseudomonas aeruginosa 2192] gi|126195602|gb|EAZ59665.1| hypothetical protein PA2G_02958 [Pseudomonas aeruginosa 2192] Length = 253 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 21/198 (10%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86 +A G+ + + + +R+ ++ + + + + +K Sbjct: 63 IADAFGVR---VDWLEHGQGDKNSRYMTSNRTEEAVRNLVAGRAGDYGNVQPTAQPS-RK 118 Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 +K PL+ + +G+ P G+ + + S Sbjct: 119 KKGYPLISWVAAGAWAESHDNFQP-GDAEEWIESEAKAGE---------NGYWLEVHGDS 168 Query: 147 MLPLYRKGDILILNSAI-QVNCGDRLLIKPR----TGDIVAKVLISRRGRSIDLMSLNCC 201 MLP + +G +++ + G + + K + GR LM LN Sbjct: 169 MLPSFPEGTRILVQPEGFDLVSGKFYVALLYEPGKQRETTFKQYVRDAGREY-LMPLNKD 227 Query: 202 YPVDTVEMSDIEWIARIL 219 Y V ++ I R++ Sbjct: 228 YKPLQVT-ENVRVIGRVI 244 >gi|332141670|ref|YP_004427408.1| LexA repressor [Alteromonas macleodii str. 'Deep ecotype'] gi|332143404|ref|YP_004429142.1| LexA repressor [Alteromonas macleodii str. 'Deep ecotype'] gi|229495162|sp|B4S1W7|LEXA_ALTMD RecName: Full=LexA repressor gi|327551692|gb|AEA98410.1| LexA repressor [Alteromonas macleodii str. 'Deep ecotype'] gi|327553426|gb|AEB00145.1| LexA repressor [Alteromonas macleodii str. 'Deep ecotype'] Length = 208 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 32/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ E I + + P + +AR+ G R+ + E Sbjct: 1 MRPLTARQTEVLELIKTTMQETGMPPTRAEIARQLGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + T + K L G G G Sbjct: 46 HLKALARK----------GVIEILPGTSRGIKLNIPLDNEAEEEEGLPLIGRVAAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V+ G ++ + Sbjct: 96 AQEHVESHYKVDPALFQPQADFLLRVNGMSMKDIGILDGDLLAVHRTTDVHNGQVVVARV 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L R GR + L + N + V+++ Sbjct: 156 D-EDVTVKRLEKR-GREVLLHAENEEFSPIKVDLA 188 >gi|289165200|ref|YP_003455338.1| SOS (Error prone) mutagenesis protein UmuD [Legionella longbeachae NSW150] gi|288858373|emb|CBJ12241.1| putative SOS (Error prone) mutagenesis protein UmuD [Legionella longbeachae NSW150] Length = 168 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 9/108 (8%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + + SM GD L+++ +I+ G ++ Sbjct: 58 ADDYIE--GYLDLNTKFIKHPSATFVLQVMGDSMVEAGIFSGDWLLVDRSIEATDGRIVI 115 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 G++ K L + I L+ N + + D E ++W Sbjct: 116 AAVN-GELTVKRLSKKE-GKIQLLPANPKFKPIDIT-QDCEM---VVW 157 >gi|257464911|ref|ZP_05629282.1| LexA repressor [Actinobacillus minor 202] gi|257450571|gb|EEV24614.1| LexA repressor [Actinobacillus minor 202] Length = 210 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 62/218 (28%), Gaps = 34/218 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I+E + + P+ +AR+ G + E + + Sbjct: 10 QQEIFEFVKNHITTTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T + + + + G G G + E Sbjct: 55 K----------GYIEMLSGTSRGIRILVNDETEAANDDGLPLIGKVAAGTPIEAIEHIEN 104 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG D + SM + GD+L ++ G ++ + ++ Sbjct: 105 YYPVNGAMFSPAADYLLRVNGNSMEKIGILDGDLLAVHKTNYAKNGQVIVARVD-DEVTV 163 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N V+ +IE IA Sbjct: 164 KRLEKK-GDLIYLHPENDELEAIVVDPRIEYIEIEGIA 200 >gi|116751196|ref|YP_847883.1| SOS-response transcriptional repressor LexA [Syntrophobacter fumaroxidans MPOB] gi|116700260|gb|ABK19448.1| SOS-response transcriptional repressor, LexA [Syntrophobacter fumaroxidans MPOB] Length = 207 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 11/196 (5%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 L + RF + + P+ + + +I + + ++ G + K + Sbjct: 12 LQRKTLEAICRFV-DAKGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGI 70 Query: 93 -----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 + G+ G + Q + SM Sbjct: 71 AVARRPSEMAASLVSVPVVGMVAAGCPILAEENVTGQVLVESDVVRSGQHFALRAVGDSM 130 Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 + GD++I+ GD ++ + K L + I+L+ N Sbjct: 131 VGAGINDGDLIIVRQQPIAEDGDIVVALLN-NEATVKRL-KIKDELIELVPENPEVRKIR 188 Query: 207 V-EMSDIEWIARIL-W 220 + D+ + +++ W Sbjct: 189 IRPEDDLRVLGKVVGW 204 >gi|330943671|gb|EGH45975.1| LexA repressor [Pseudomonas syringae pv. pisi str. 1704B] Length = 126 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 3/104 (2%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G E N + + + + SM + GD+L +++ + Sbjct: 10 VAAGAPILAQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARN 69 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G ++ + ++ K G + L++ N + V++ D Sbjct: 70 GQIVVARI-GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 111 >gi|258626612|ref|ZP_05721442.1| LexA repressor [Vibrio mimicus VM603] gi|258581116|gb|EEW06035.1| LexA repressor [Vibrio mimicus VM603] Length = 209 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAEAGLPLIGRVAAGEPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 97 AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G + L + N + V+++ Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189 >gi|322389640|ref|ZP_08063188.1| phage transcriptional repressor [Streptococcus parasanguinis ATCC 903] gi|321143639|gb|EFX39069.1| phage transcriptional repressor [Streptococcus parasanguinis ATCC 903] Length = 254 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 70/228 (30%), Gaps = 24/228 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + L+R G+ ++ + E++ KI A Sbjct: 22 ISEKIRELLKEQGKKQIELSRITGIPASTLTGYVKGTSLPVP-----ENLEKIAAFFQVA 76 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--------------SGVFPTGNK 114 + + +D + + + + + + + + Sbjct: 77 VADIDPRLRNDFVVIDSEIERLYKQLDEGNQENLLSYGKSLLTHQKERQKIEKQYHSYSV 136 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDT--RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 +++ + + + ++ Q S+ P Y KG ++++ G + Sbjct: 137 YDSFAAYQNQKQADIVWFDQKIPYDLAFWIHTDSLEPKYEKGAVVLIKQTYYDQAG-AIY 195 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G + K + I L+SLN Y + + + I +++ Sbjct: 196 AIDFDGQTLIKRVFREANG-IRLVSLNKKYSDQIIPLDEEPGVIGKVI 242 >gi|227113709|ref|ZP_03827365.1| LexA repressor [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 202 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKVLTARQQQVYDLIRDHIAQTGMPPTRAEIAQQLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEETGIPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQEHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTEDVRNGQIVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++ L++ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNTVHLLAENEEFAPIVVDLRQ 183 >gi|167771331|ref|ZP_02443384.1| hypothetical protein ANACOL_02689 [Anaerotruncus colihominis DSM 17241] gi|167666582|gb|EDS10712.1| hypothetical protein ANACOL_02689 [Anaerotruncus colihominis DSM 17241] Length = 250 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 44/168 (26%), Gaps = 6/168 (3%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 PS I L + + + E++ + P G G Sbjct: 82 PSVREICARLGMKSTSTAHHYLKSLEEKGYIEREGSLNRAIRLPCGNVTRVPLVGTVTAG 141 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRL 171 V E P I + + +SM+ GDI+I GD + Sbjct: 142 QPILAVESIEAYLPVP-IRGDAKDFFALRVRGSSMIKAAILDGDIVIAQRRDTAEDGDIV 200 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K + + L N + + +++ Sbjct: 201 VALID-DEATVKRFFREK-KRYRLQPENDAMEPIY--TDHVTILGQVV 244 >gi|300714896|ref|YP_003739699.1| LexA repressor [Erwinia billingiae Eb661] gi|299060732|emb|CAX57839.1| LexA repressor [Erwinia billingiae Eb661] Length = 202 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 46/176 (26%), Gaps = 3/176 (1%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R I P+ I L + + + E + Sbjct: 8 QQQVYDLIRDHINQTGMPPTRAEIAAQLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G E + D + SM + Sbjct: 68 LMMEEEEGLPLIGRVAAGEPLLAEEHIEGHYKVDPELFKPGADFLLRVSGMSMKDIGIMD 127 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD+L ++ V G ++ + ++ K L + G + L+ N + V++ Sbjct: 128 GDLLAVHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GNIVHLLPENGEFQPIVVDL 181 >gi|258623122|ref|ZP_05718134.1| LexA repressor [Vibrio mimicus VM573] gi|262163660|ref|ZP_06031401.1| SOS-response repressor and protease LexA [Vibrio mimicus VM223] gi|262172856|ref|ZP_06040534.1| SOS-response repressor and protease LexA [Vibrio mimicus MB-451] gi|258584605|gb|EEW09342.1| LexA repressor [Vibrio mimicus VM573] gi|261893932|gb|EEY39918.1| SOS-response repressor and protease LexA [Vibrio mimicus MB-451] gi|262027876|gb|EEY46540.1| SOS-response repressor and protease LexA [Vibrio mimicus VM223] Length = 209 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + I G G G Sbjct: 46 HLKALARK---------QVIEMVPGASRGIRILIDNAANEEEAETGLPLIGRVAAGEPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 97 AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G + L + N + V+++ Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189 >gi|6685589|sp|O32506|LEXA_DEIRA RecName: Full=LexA repressor gi|2257478|dbj|BAA21376.1| orf144d [Deinococcus radiodurans] Length = 210 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 34/218 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + I +A + T +A++ G+ + ++ + K+ Sbjct: 8 TRRSILQA--TLRLGAGATAGQVAQEVGITKQAISQ-------------QVNILRKL--- 49 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + G G G PE Sbjct: 50 ------------GYLQPAETRYGPLQVTDRARAALGEGLPIYGQIAAGIPALAEQSPEDF 97 Query: 125 SPH-NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR-LLIKPRTGDIV 181 +P + ++ D + + SM + GD +++ A +V+ G+ +++ P Sbjct: 98 TPSIEALLGLKAGDFLLRVRGESMTGIGVMDGDYVVVRPAPEVHDGEVAVVLVPGDNAAT 157 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L G+ I L S N P + ++ R++ Sbjct: 158 LKRLY-HFGQDILLTSENPAMPRLSFPAEQVQVQGRMV 194 >gi|307250364|ref|ZP_07532312.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857574|gb|EFM89682.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 173 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 7/126 (5%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 + G G G + E P NG D K SM + G Sbjct: 40 TAANDDGLPLIGKVAAGTPIIAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDG 99 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---- 210 D+L ++ G ++ + ++ K L + G I L N V+ Sbjct: 100 DLLAVHKTNFARNGQVVVARVD-DEVTVKRLEKK-GDLIYLHPENDELQPIIVDPRIEYI 157 Query: 211 DIEWIA 216 +IE IA Sbjct: 158 EIEGIA 163 >gi|302059723|ref|ZP_07251264.1| LexA repressor [Pseudomonas syringae pv. tomato K40] gi|302134131|ref|ZP_07260121.1| LexA repressor [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 205 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 4 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 48 --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVAR- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + + L+ N Y V Sbjct: 156 LEGEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 190 >gi|28869978|ref|NP_792597.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000] gi|213966983|ref|ZP_03395133.1| LexA repressor [Pseudomonas syringae pv. tomato T1] gi|301385168|ref|ZP_07233586.1| LexA repressor [Pseudomonas syringae pv. tomato Max13] gi|37999579|sp|Q881U0|LEXA2_PSESM RecName: Full=LexA repressor 2 gi|28853223|gb|AAO56292.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000] gi|213928305|gb|EEB61850.1| LexA repressor [Pseudomonas syringae pv. tomato T1] Length = 202 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 1 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 45 --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 98 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVAR- 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + + L+ N Y V Sbjct: 153 LEGEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 187 >gi|325108926|ref|YP_004269994.1| SOS-response transcriptional repressor, LexA [Planctomyces brasiliensis DSM 5305] gi|324969194|gb|ADY59972.1| SOS-response transcriptional repressor, LexA [Planctomyces brasiliensis DSM 5305] Length = 202 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 4/131 (3%) Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 + I L +G G+ V E + Sbjct: 64 ESHMSRAIQLTDHAQMRPTSMKLAGQIAAGSPVLAVEEEERVDFSG--LFDDDNHFCLRV 121 Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 + SM +GD +I+ GD ++ D K I L N Sbjct: 122 KGDSMIEDHIAEGDYVIVERRKSCKEGDIVVALVEGQDATLKRFFR-ENGRIRLEPANST 180 Query: 202 YPVDTVEMSDI 212 + +I Sbjct: 181 MQPIYTDHCEI 191 >gi|261492383|ref|ZP_05988941.1| putative LexA family repressor/S24 family protease [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261497010|ref|ZP_05993372.1| putative LexA family repressor/S24 family protease [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307331|gb|EEY08672.1| putative LexA family repressor/S24 family protease [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311957|gb|EEY13102.1| putative LexA family repressor/S24 family protease [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 227 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 4/189 (2%) Query: 35 PTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + ++ K R E+ + + + + + S E + + P+ Sbjct: 29 KSYISQLKSGKSSFGERAARRLENEYGMPSFYLDYDEETESAIVSAMSIQETQSHQYPIH 88 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 G ++ SM P K Sbjct: 89 LIDFKAKAGETGFINTNYPEIIQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMSPTINK 148 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 GD++ +++ I + + I ++ K L G +S N Y ++ ++ Sbjct: 149 GDVVFIDTTINYYNNEGVYIFVIDDEVYIKRLQKIPGGIYRALSDNKTYEPFDIKRETLD 208 Query: 214 ---WIARIL 219 + + + Sbjct: 209 TAIILGKFI 217 >gi|254374758|ref|ZP_04990239.1| prophage repressor protein [Francisella novicida GA99-3548] gi|151572477|gb|EDN38131.1| prophage repressor protein [Francisella novicida GA99-3548] Length = 217 Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 +L + +G + P + + +P+ Sbjct: 63 PSDTSIITVANVP------VLSYVQAGEFTESQENIDP----IDYLQIPDSL-------- 104 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SM P +G+ ++++ D++++ Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVV 209 >gi|323498070|ref|ZP_08103076.1| LexA repressor [Vibrio sinaloensis DSM 21326] gi|323316878|gb|EGA69883.1| LexA repressor [Vibrio sinaloensis DSM 21326] Length = 206 Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 63/214 (29%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KEAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 94 AQEHVETHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVVVARV 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G ++ L + N + V++ Sbjct: 154 D-EDVTVKRLERK-GSTVLLHAENEEFEPIKVDL 185 >gi|316984797|gb|EFV63755.1| peptidase S24-like family protein [Neisseria meningitidis H44/76] Length = 146 Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + + SM + D +++N A + D L + D+ K + + Sbjct: 52 PEKLSVITVKGDSMEGVLNHEDSILINHAET-DPRDGLYVLRIGNDLFVKRVQRIP-GKL 109 Query: 194 DLMSLNCCYPVDTVEM----SDIEWIARILWA 221 + S N Y +++ DI I R+ W Sbjct: 110 LVTSENPRYAPFEIDLSNAQDDIAIIGRVEWY 141 >gi|197690562|emb|CAQ19389.1| putative transcriptional regulator [Geobacillus stearothermophilus] Length = 152 Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 GN E P + + K + SM+ GD+L++ V+ Sbjct: 34 VSCGNGVIAYEEIESYEPVPADWIDGGEYFFAKAKGDSMIGARIMDGDLLLIRRQDDVDN 93 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIAR 217 G+ + +IV K + +I L S N Y V D + I + Sbjct: 94 GEIAAVLID-DEIVLKRVYK-TDDTIILQSENPAYKPIVVRPEDAKNVRIIGK 144 >gi|184158540|ref|YP_001846879.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|213156198|ref|YP_002318618.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Acinetobacter baumannii AB0057] gi|301346671|ref|ZP_07227412.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein [Acinetobacter baumannii AB056] gi|301596889|ref|ZP_07241897.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein [Acinetobacter baumannii AB059] gi|332852712|ref|ZP_08434346.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332871084|ref|ZP_08439697.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] gi|183210134|gb|ACC57532.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|213055358|gb|ACJ40260.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Acinetobacter baumannii AB0057] gi|323516960|gb|ADX91341.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|323518461|gb|ADX92842.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332729065|gb|EGJ60413.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332731844|gb|EGJ63124.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] Length = 254 Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/246 (10%), Positives = 68/246 (27%), Gaps = 32/246 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + +D + ++ P+ L +K + ++ + + R + E I K T Sbjct: 4 LKSNLDYLLTKNETNPTDLEQKHPEIKQSTVFRILNGITKD-PRRSTLEPIAKWAGVTVN 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------------FFDSGVFPTGNK 114 + + E L+Y F+ G+ Sbjct: 63 DLFDKDLSVLERNQNEHNPGPENNLIYDTEIHLYEDGDPVPDGYVAIDFYSEIKVSAGSG 122 Query: 115 WNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + SM+P G + ++++ + Sbjct: 123 YLNIEHQSPHKFLFPINEIRRYDVKPDCAKVLVVDGESMIPDLYPGQRISIDTSAKRIFD 182 Query: 169 DRLLIKPRTGDIVAKVLIS---RRGRSIDLMSLNCC--------YPVDTVEMSDIEWIAR 217 + + ++ K+L + +S N Y +E +++ I + Sbjct: 183 GEIYAFLKGDELKIKMLFEWNEQGKGGFKAVSRNTDKVKYPDEYYSPARIEAENVQIIGQ 242 Query: 218 ILWASQ 223 W S+ Sbjct: 243 YWWKSE 248 >gi|311281411|ref|YP_003943642.1| transcriptional repressor, LexA family [Enterobacter cloacae SCF1] gi|308750606|gb|ADO50358.1| transcriptional repressor, LexA family [Enterobacter cloacae SCF1] Length = 202 Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGAIEIVSGASRGIRLLTEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPAMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GSVVELLPENSEFSPIVVDLRQ 183 >gi|298489951|ref|YP_003720128.1| LexA family transcriptional repressor ['Nostoc azollae' 0708] gi|298231869|gb|ADI63005.1| transcriptional repressor, LexA family ['Nostoc azollae' 0708] Length = 200 Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 43/173 (24%), Gaps = 8/173 (4%) Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 PS + + + + Q + + E + + G G Sbjct: 25 SPSIRQMMQAMNLKSPAPIQSRLEHLRNKGYIDWNEGKARTIRVLRQTKQGVPILGTIAA 84 Query: 112 GNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV---N 166 G + + ++ + SM L GD++ L + Sbjct: 85 GGLIE--PFTDAVEHLDFSNLSLPAHSYALRVAGDSMIEDLIADGDVVFLRPVPEPNHLK 142 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G + + K + + L N Y V +E ++ Sbjct: 143 NGTIVAARVEGHGTTLKRFYRQEN-MVTLKPANPKYQPIEVPAMHVEVQGSLV 194 >gi|260886437|ref|ZP_05897700.1| repressor LexA [Selenomonas sputigena ATCC 35185] gi|260863819|gb|EEX78319.1| repressor LexA [Selenomonas sputigena ATCC 35185] Length = 152 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 10/112 (8%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 N + P+ + ++ + + SM+ GD + + + Sbjct: 44 LAEENIEDVFSFPQGLIGTH------SKVFVLRVKGRSMINAGIHDGDFVFVKQQETADN 97 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ G K + I L N ++ + +++ Sbjct: 98 NDIVVALVDDGSATVKRFFKEKD-CIRLQPENDEMEPFY--EKNVRILGKVI 146 >gi|162452745|ref|YP_001615112.1| LexA repressor [Sorangium cellulosum 'So ce 56'] gi|189046550|sp|A9F881|LEXA_SORC5 RecName: Full=LexA repressor gi|161163327|emb|CAN94632.1| LexA repressor [Sorangium cellulosum 'So ce 56'] Length = 230 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 53/223 (23%), Gaps = 18/223 (8%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-----SFNKSKRFGIEGRNR 51 M + +++ I + P+ + G+ T +R G R Sbjct: 1 MQGLTERQQQVLHYIRQSISERGYPPTLREIGAHMGIRSTNGVNDHLRALERKGYLTRED 60 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 S + L L +G + L + Sbjct: 61 MKSRALRPRDLDGAGAGGGADLRGALVNGGNDAPANDQEDDLVEIAVVGRIAAGLPILAE 120 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170 + +TV + + + SM GD + + + GD Sbjct: 121 EHVLDTVRIERTLVRGGR------EVFGLRVTGDSMIEAGIFSGDYIFVRRQLTAQRGDI 174 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 ++ + K + + N V SD + Sbjct: 175 VVALI-GDEATVKYFFPEKD-YVRFQPANAAMAPILVRASDFK 215 >gi|254291837|ref|ZP_04962621.1| LexA repressor [Vibrio cholerae AM-19226] gi|150422273|gb|EDN14236.1| LexA repressor [Vibrio cholerae AM-19226] Length = 209 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAEIGLPLIGRVAAGEPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 97 AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G + L + N + V+++ Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189 >gi|75908417|ref|YP_322713.1| SOS-response transcriptional repressor LexA [Anabaena variabilis ATCC 29413] gi|75702142|gb|ABA21818.1| SOS-response transcriptional repressor, LexA [Anabaena variabilis ATCC 29413] Length = 201 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 46/190 (24%), Gaps = 8/190 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 + I PS + + + + Q E E + + Sbjct: 8 QQELYEWLAEYIRIHQHSPSIRQMMQAMNLKSPAPIQSRLEHLRTKGYIEWTEGKARTIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYR 152 G G G + + +A+ Q + SM L Sbjct: 68 ILQPIKQGVPVLGAIAAGGLIE--PFTDAVEHIDFSNFALPAQTYALRVTGDSMIEDLIT 125 Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD++ L + G + + K G I L N Y V Sbjct: 126 DGDLVFLRPVPEPDQLKNGTIVAARVDGYGNTLKRFYR-SGDRITLKPANPKYNPIEVAA 184 Query: 210 SDIEWIARIL 219 +E ++ Sbjct: 185 IQVEVQGSLV 194 >gi|54293947|ref|YP_126362.1| hypothetical protein lpl1004 [Legionella pneumophila str. Lens] gi|53753779|emb|CAH15239.1| hypothetical protein lpl1004 [Legionella pneumophila str. Lens] gi|307609767|emb|CBW99282.1| hypothetical protein LPW_10611 [Legionella pneumophila 130b] Length = 168 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + SM+ GD L+++ +I+ + G ++ Sbjct: 58 ADDYIE--GYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLVDRSIEPSDGRIVI 115 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + G + L+ N + + I ++ Sbjct: 116 AAVN-GELTVKRLSKK-GGRVQLLPANPKFQPIDITEDSEMVIWGVV 160 >gi|315128231|gb|EFT84267.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus CGS03] Length = 243 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 65/242 (26%), Gaps = 33/242 (13%) Query: 9 IWEAIDRMAERHNLTPSGLA--------RKAGLDPTSFNKSKRFGIEGRNRWPST----- 55 I E + ++ + N+T LA L +K + E R Sbjct: 3 IGEGLKKLRKNKNMTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYF 62 Query: 56 ----ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF------- 104 ++ T + + + ++ Sbjct: 63 NVKINDLYSESNTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNKVISIDGYKESK 122 Query: 105 ---DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILI 158 TG +I +T D SM P+ ++G Sbjct: 123 LVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAF 182 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIAR 217 + + G L+ G + K + I+L+SLN Y V S+I+ + + Sbjct: 183 IKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGK 240 Query: 218 IL 219 ++ Sbjct: 241 VV 242 >gi|310827729|ref|YP_003960086.1| putative prophage repressor [Eubacterium limosum KIST612] gi|308739463|gb|ADO37123.1| putative prophage repressor [Eubacterium limosum KIST612] Length = 226 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 15/213 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + N T ++RK L P S ++ R + P +I ++ A + + Sbjct: 13 GQRLKYLMTNFNETTYSMSRKFNLSPPSISRYTRGEM-----APKITTIREMAAYFDVSP 67 Query: 70 CQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L+ P S + + VF +T+ +P Sbjct: 68 LWLMGRPGSMYEREVLDDTEPFGAEVTLSVFGSIKYQLPVFSNEKTIHTLTLPS------ 121 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 A + D SM P K D +++ + GD + D+ + + R Sbjct: 122 DQLAKWGPVFAMEITDASMEPTLMKNDFVVVRLNTFLKSGDLTALHVGESDLKIRKVSFR 181 Query: 189 RGRSIDLMSLNCCYPVDTVEM--SDIEWIARIL 219 + + I L N + V+ ++ +++ I ++ Sbjct: 182 KNQVI-LQPHNPAFEVEIYDLNKDNVQVIGSVV 213 >gi|197284836|ref|YP_002150708.1| phage repressor [Proteus mirabilis HI4320] gi|194682323|emb|CAR42114.1| putative phage repressor [Proteus mirabilis HI4320] Length = 215 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 20/221 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + +LT LA+ + S K + E P E++ + + Sbjct: 4 RIKERRLQLSLTQEALAKMLSVSRVSITKWETRVTE-----PDGENLQALAKVLEVSPEW 58 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 LL S ++ + P + +++T+ + +I+ Sbjct: 59 LLYGGNSSEADALIITRKTVNIKKIPIITLEQAADWK----ARYDTLRLSDIQHWCCATV 114 Query: 132 AIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRLLIKPRT-GDIVA 182 + Q Q SM LP KG +I+ + + G ++ K DIV Sbjct: 115 PVSEQAYGLIYQGESMTNPYSLPSIPKGSTVIIEPSFKNKIELYGKIIIAKNIITNDIVI 174 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 K I + L+SLN + +D + I ++ Q Sbjct: 175 KKFIHEPPQ-FYLISLNTAFTPILFT-NDYQIIGYVIQIIQ 213 >gi|206580872|ref|YP_002241016.1| LexA repressor [Klebsiella pneumoniae 342] gi|288937661|ref|YP_003441720.1| transcriptional repressor, LexA family [Klebsiella variicola At-22] gi|290512400|ref|ZP_06551767.1| LexA repressor [Klebsiella sp. 1_1_55] gi|226694235|sp|B5XXY9|LEXA_KLEP3 RecName: Full=LexA repressor gi|206569930|gb|ACI11706.1| LexA repressor [Klebsiella pneumoniae 342] gi|288892370|gb|ADC60688.1| transcriptional repressor, LexA family [Klebsiella variicola At-22] gi|289775395|gb|EFD83396.1| LexA repressor [Klebsiella sp. 1_1_55] Length = 202 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGAIEIVSGASRGIRLLTEEEHGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSMFKPNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNVVELLPENSEFTPIVVDLRQ 183 >gi|54292962|ref|YP_122349.1| hypothetical protein plpl0056 [Legionella pneumophila str. Lens] gi|53755870|emb|CAH17375.1| hypothetical protein plpl0056 [Legionella pneumophila str. Lens] Length = 168 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + SM+ GD L+++ +I+ + G ++ Sbjct: 58 ADDYIE--GYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLVDRSIEPSDGRIVI 115 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + G + L+ N + + I ++ Sbjct: 116 AAVN-GELTVKRLSKK-GGRVQLLPANPKFQPIDITEDSEMVIWGVV 160 >gi|293606987|ref|ZP_06689331.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814584|gb|EFF73721.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 225 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 10/223 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + +D + + ++ + LA + G+ + + G R ++ ++ + Sbjct: 2 QRDFVAKLDFQMQSNGVSAAALAERLGVSTPAVYGWRNNGRFDREHAM---ALAQVFGTS 58 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + + P G+ + + + PT + V Sbjct: 59 IAYWLSPEIPVGAPTDLSALAGSDAETIDIPFLGARLNYGTMLPPTACAIRHLRVSRAWL 118 Query: 126 PHNGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 A T + M P +R+GDI + S ++ D L + + + + Sbjct: 119 NGRLPLDANLTTVGFVYIEGAFMEPTFRQGDIAFVQSDVKEVNADGLYLIRQGEQVDLRF 178 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARI--LWA 221 + G + L + + V + D ++ +AR+ WA Sbjct: 179 VQRLPGGGLRLSTESTKVAPIDVPVQDLDDFVQIVARVPFTWA 221 >gi|157413820|ref|YP_001484686.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9215] gi|157388395|gb|ABV51100.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9215] Length = 205 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 54/189 (28%), Gaps = 8/189 (4%) Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + ++ PS + + + + Q + +E + + Sbjct: 16 LYGWIKEYMKDFQHSPSIRQMMQAMGLKSPAPIQSRLKHLQEKGYISWQEGKARTMQIVD 75 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 G G G T + + + + SM+ GD+ Sbjct: 76 EIIEGVPIMGSVAAGGLIETYSDVQENLDISDVLK-RKNVFALTVNGDSMIDACIADGDM 134 Query: 157 LILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 +++ + + G + K + R G I L + N Y + + ++ Sbjct: 135 VLMEPIKDSYSLKNGTIVSALVPGLGTTLKYFVKR-GGKIFLEAANPAYEPIELNLDEVV 193 Query: 214 WIARI--LW 220 + ++ +W Sbjct: 194 FQGKLLAVW 202 >gi|161869964|ref|YP_001599133.1| UmuD/LexA family transcriptional regulator [Neisseria meningitidis 053442] gi|161595517|gb|ABX73177.1| transcriptional regulator, UmuD/LexA family [Neisseria meningitidis 053442] Length = 146 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + + SM + GD +++N A + D L + D+ K + + Sbjct: 52 PEKLSVITVKGDSMEGVLNHGDSILINHAKT-DPRDGLYVLRIGNDLFVKRVQRIP-GKL 109 Query: 194 DLMSLNCCYPVDTVE----MSDIEWIARILWA 221 + S N Y ++ DI I R+ W Sbjct: 110 LVTSENPRYAPFEIDFSNAQDDIAIIGRVEWY 141 >gi|319761849|ref|YP_004125786.1| lexa repressor [Alicycliphilus denitrificans BC] gi|317116410|gb|ADU98898.1| LexA repressor [Alicycliphilus denitrificans BC] Length = 193 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 3/102 (2%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 PE+ + + + + + HK + SM +GD++++ GD ++ Sbjct: 86 EEPEVLTIDDYLIDDPNRTSLHKVRGDSMKDAGILEGDLVVVEHHTPTKPGDIVVAWAD- 144 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K L+ L N Y + +E + ++ Sbjct: 145 NELTVKTLLLDPQGRYYLQPANSAYQPI-FPATSLEVMGVVI 185 >gi|313905803|ref|ZP_07839162.1| LexA repressor [Eubacterium cellulosolvens 6] gi|313469409|gb|EFR64752.1| LexA repressor [Eubacterium cellulosolvens 6] Length = 200 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 55/216 (25%), Gaps = 36/216 (16%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I ++ + + +PS +A G+ + K Sbjct: 12 IKAFVEEYYKNYRHSPSTTEIADAVGIARGTAYKY-----------------------LV 48 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + +TEK EK V +P Sbjct: 49 AMNDNGMIRYDGQQISTEKTEKVQTEFTSVALLGAVSCGVPTLEEEYIEEYVSLPASMFG 108 Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + SM GD++++ + GD ++ + K Sbjct: 109 -------KGTFFLLRAKGESMIEAGISPGDLVLVRRQSEAKDGDIVVAL-VANENTLKRY 160 Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIA-RIL 219 + + I L N V I+ +A +++ Sbjct: 161 FVDKENQKIRLHPENKTMKDIIVSDCKIQGVAVKVI 196 >gi|258405026|ref|YP_003197768.1| Peptidase S24, S26A and S26B, conserved region [Desulfohalobium retbaense DSM 5692] gi|257797253|gb|ACV68190.1| Peptidase S24, S26A and S26B, conserved region [Desulfohalobium retbaense DSM 5692] Length = 148 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 8/130 (6%) Query: 94 YFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + P G + + P H + + + + SM Sbjct: 16 PLVQKEQQTPLYTARVPAGFPSPADDHLDRP--LDLHEYLISNEAATFMVRVSGDSMSGA 73 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GDIL+++ ++ G ++ G++ K L R G L + + YP TV Sbjct: 74 GILDGDILVVDRSLSPRTGHIVVAVLD-GELTVKRLTRR-GEQWRLEAAHDGYPPLTVRP 131 Query: 210 SDIEWIARIL 219 + ++ Sbjct: 132 EQEFLVWGVV 141 >gi|187940114|gb|ACD39246.1| hypothetical protein PACL_0458 [Pseudomonas aeruginosa] Length = 253 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 61/248 (24%), Gaps = 56/248 (22%) Query: 11 EAIDRMAERHNLTP----SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + A + LA+ P + +K P +++ I A Sbjct: 14 ARLKEAASDAGFQEWGLGARLAKITKRTPKAVSKWMNLES-----MPERDAMLSIADAFG 68 Query: 67 ETICQLLDLPFSDGRTTEKKEKE------------------------------IPLLYFP 96 + L + PL+ + Sbjct: 69 VRVDWLEHGQGEKNSRYMTSNRTEDAVRNLVAERAGDYGNVQPTAQPSRKKKGYPLISWV 128 Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 +G+ P G+ + + SMLP + +G Sbjct: 129 AAGAWAESHDNFQP-GDAEEWIESEAKAGE---------NGYWLEVHGDSMLPSFPEGTR 178 Query: 157 LILNSAI-QVNCGDRLLIKPR----TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 +++ + G + + K + GR LM LN Y V + Sbjct: 179 ILVQPEGFDLVSGKFYVALLYEPGKQRETTFKQYVRDAGREY-LMPLNKDYKPLQVT-EN 236 Query: 212 IEWIARIL 219 + I R++ Sbjct: 237 VRVIGRVI 244 >gi|283852524|ref|ZP_06369792.1| putative phage repressor [Desulfovibrio sp. FW1012B] gi|283572132|gb|EFC20124.1| putative phage repressor [Desulfovibrio sp. FW1012B] Length = 278 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/252 (12%), Positives = 67/252 (26%), Gaps = 43/252 (17%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---------WPSTESIFK 60 W+A+ +A N + +A G+ +K + S E + Sbjct: 25 WKALVDLAAMENANQAEMAAFVGVSQGYVSKILAGKQAPKPALRRRFAAFFKLSYEDMVA 84 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------- 109 + E+ + + + P + + F Sbjct: 85 LGRERLESQAYVSEGAGAKRYHVRDPLYGGDAAGRPQASATDFAALKSLLRDLRAREVHQ 144 Query: 110 ------------------PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 T + R+ T + SM P Sbjct: 145 ASYTEVPLREATGSMGGGSTETGDRALTYLSFRTDWIRSKGNPEYMTVIRAFGDSMEPTI 204 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EM 209 G +++++ + +++ G + K L+ R + + S N P + + Sbjct: 205 PDGSVVLIDEGRRQFVKNKVYYLRYNGQMYIKRLVER-DGRLAIASDND--PNLLLVSDA 261 Query: 210 SDIEWIARILWA 221 D E I R +W+ Sbjct: 262 DDFEIIGRCIWS 273 >gi|331014287|gb|EGH94343.1| LexA repressor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 205 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M++ S ++ I I + +PS ++ G S + Sbjct: 4 MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I+A T + +++ R + + L + P G + Sbjct: 48 --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 100 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + D + Q SM GD++ ++ Q + G ++ + Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVPRL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + + L+ N Y V Sbjct: 157 D-GEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 190 >gi|296102600|ref|YP_003612746.1| DNA polymerase V UmuD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057059|gb|ADF61797.1| DNA polymerase V UmuD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 123 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + + SM+ GD+L+++ ++ GD ++ Sbjct: 11 DYVE--DSLDLNKLVIKHPSATYFVRVSGDSMIGAGISHGDLLVVDRSLTAVHGDIVIAA 68 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G+ K L + + L+ N Y ++E + Sbjct: 69 -VAGEFTVKELQTHP--RLQLIPHNPDYAPVFFAAEDELEIFGVV 110 >gi|289208993|ref|YP_003461059.1| transcriptional repressor, LexA family [Thioalkalivibrio sp. K90mix] gi|288944624|gb|ADC72323.1| transcriptional repressor, LexA family [Thioalkalivibrio sp. K90mix] Length = 207 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155 + G G+ E + D + SM GD Sbjct: 72 AARPAELPLVGRVAAGSPILATEHIERHYRIDDGLFRARPDYLLRVHGESMRDAGILDGD 131 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---- 211 +L + + + G ++ + ++ K + G + L+ N + +++ Sbjct: 132 LLAVRQTPEAHPGQIVVARI-EDEVTVKRY-EQDGARVRLLPENPDFAPIEIDLERQALA 189 Query: 212 IEWIA 216 IE I Sbjct: 190 IEGIG 194 >gi|186684595|ref|YP_001867791.1| SOS-response transcriptional repressor, LexA [Nostoc punctiforme PCC 73102] gi|186467047|gb|ACC82848.1| SOS-response transcriptional repressor, LexA [Nostoc punctiforme PCC 73102] Length = 201 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 44/187 (23%), Gaps = 8/187 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 + I PS + + + + Q E E + + Sbjct: 8 QQELYEWLAEYIRTHQHSPSIRQMMQAMNLKSPAPIQSRLEHLRTKGYIEWTEGQARTIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYR 152 G G G + + + + Q + SM L Sbjct: 68 ILRPVKQGVPILGTIAAGGLIE--PFTDAVDHLDFSNFDLPPQTYALRVAGDSMIEDLIT 125 Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD++ L + G + + K + G + L N Y V Sbjct: 126 DGDVVFLRPVAEPNHLKNGTIVAARVDGFGTTLKRFYRQ-GDRVTLKPANPKYNPIEVSA 184 Query: 210 SDIEWIA 216 ++ Sbjct: 185 MQVQVQG 191 >gi|253574140|ref|ZP_04851482.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] gi|251846617|gb|EES74623.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] Length = 290 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 35/284 (12%), Positives = 77/284 (27%), Gaps = 71/284 (25%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + E I + +T L + G+ ++ +K ++ + ++E++F Sbjct: 1 MADLK-KALGERIKKCRLEKGMTLRELGSQVGMTSSALSKVEKGSV-----SITSENLFA 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------- 109 I A ++ LL + + E+ P + F Sbjct: 55 ISEAFGVSVDWLLTGKEAQFKDEGYDTNEVRKEATPIFFDEEWEVVSQFRNLSDEEKTFV 114 Query: 110 ----------------------------PTGNKWNT-------------------VGVPE 122 G +T + + Sbjct: 115 KQYLRFTQAQKKDQQSSEDEKEDTIREEAAGYAIDTNSADEYTGSAPIWGEAAAGIPIES 174 Query: 123 IRSPHNGIYAIQTQ---DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 IR + + K + SM G +I+ S V+ D + Sbjct: 175 IRMYEGKRLRVPAKYNKCFAVKVKGDSMKDSGILNGGYVIVRSQNMVDDDDI-ALMMIEN 233 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221 K R + L+S N + S +++ + ++++ Sbjct: 234 QATIKRFHLRGND-VVLISDNDDFEPMVFHRSKEMQVVGKVVYY 276 >gi|84624899|ref|YP_452271.1| LexA repressor [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368839|dbj|BAE69997.1| LexA repressor [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 201 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 66/215 (30%), Gaps = 35/215 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + + + ++PS +A+ G R + + + Sbjct: 1 MPPLTPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++L + + L + G P G Sbjct: 53 GLIELL----------PNQKRGIRVPGCAGRDALLNLPVLGRVAAG------VPIGA--- 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +G+ +++++ + Q SM+ GD++ ++ + + G ++ + Sbjct: 94 DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSKEARDGQIVVARV 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L I L+ N + V Sbjct: 153 D-GEITIKRLER-GTERIRLLPRNRAHAPIVVAAD 185 >gi|300777210|ref|ZP_07087068.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300502720|gb|EFK33860.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 260 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 17/219 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + + L+ LA++ L ++K + +GR+ P E + +I N +I Sbjct: 6 ENIRYLRAQKKLSQQELAKEIFLSRVRYSKYE----DGRSEAP-YEVLIRISKYFNISID 60 Query: 71 -----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEI 123 + P D + +P++ + G ++ E Sbjct: 61 LLLTVDIRKYPLEDMINLPANKVLLPIVVDTEGNNFIEIVPQKASMGYLKGFSDPEYIEN 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDI 180 + + SM P + ILI + + I I Sbjct: 121 LQKIYFPFLKNGKYRGFLADGDSM-PPFADQSILIGEYVEKLEDLKANKE-YIFVTQEGI 178 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + R + I +++ N Y + + +I + R + Sbjct: 179 TYKTFLKRNKKYITVLADNSFYEPYNIALDEIAQVWRYV 217 >gi|114331472|ref|YP_747694.1| putative phage repressor [Nitrosomonas eutropha C91] gi|114308486|gb|ABI59729.1| putative phage repressor [Nitrosomonas eutropha C91] Length = 344 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 69/251 (27%), Gaps = 37/251 (14%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-------------WP 53 ++ E + + +P LA+ + ++ + + W Sbjct: 95 DRLLEVMRELRIE---SPRELAKFCNVSEGLVSQWFSGQTKLGPKPLLALSKTKFSIEWL 151 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 T + K ++ + + G + + +F + + G Sbjct: 152 LTGKLPKYSPRSDIEMHGFNESNVEPGLDITTPQPSHRVSFFDSTPQPDEVVIPQYDAGG 211 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ--------------DTSMLPLYRKGDILIL 159 + + + + + R + SM P++ GD L++ Sbjct: 212 SMGNGLILDGMVGVIKSWHVDHEWLRLNVRRHTGVNNLCIVTGFGPSMQPMFNPGDPLLM 271 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRR---GRSI-DLMSLNCCYPVD-TVEMSDIEW 214 + + D + K + G I S N Y VE D E Sbjct: 272 DRGVTEVDSDAVYFFRVGNHGYIKTIQRIPTTDGGVIYRAKSKNSDYDPFDIVEGMDFEV 331 Query: 215 IARI--LWASQ 223 +I +W S+ Sbjct: 332 FGKILTVWKSE 342 >gi|312866700|ref|ZP_07726914.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311097781|gb|EFQ56011.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 251 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 24/228 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + L+R G+ ++ + E++ KI A Sbjct: 19 ISEKIRELLKEQGKKQIELSRITGIPASTLTGYVKGTSLPVP-----ENLEKIAAFFQVA 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS----GGFFDSGVFPTGNKWNTVGVPEIR 124 + ++ +D + + + + + G K Sbjct: 74 VAEIDPRLRNDFVVIDSEIERLYKQLDEGNQENLLSYGKSLLTHQKEKQKIEKQYHSYSV 133 Query: 125 SPHNGIYAIQTQD------------TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 Y Q Q S+ P Y KG ++++ G + Sbjct: 134 YDSFAAYQNQKQADIVWFDQKIPYDLAFWIHTDSLEPKYEKGAVVLIKQTYYDQAG-AIY 192 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G + K + I L+SLN Y + + + I +++ Sbjct: 193 AIDFDGQTLIKRVFREANG-IRLVSLNKKYSDQIIPLDEEPGVIGKVI 239 >gi|240949485|ref|ZP_04753825.1| LexA repressor [Actinobacillus minor NM305] gi|240296058|gb|EER46719.1| LexA repressor [Actinobacillus minor NM305] Length = 210 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 62/218 (28%), Gaps = 34/218 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I++ + + P+ +AR+ G + E + + Sbjct: 10 QQEIFDFVKNHITTTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T + + + + G G G + E Sbjct: 55 K----------GYIEMLSGTSRGIRILVNDEMEAANDEGLPLIGKVAAGTPIEAIEHIED 104 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P NG D + SM + GD+L ++ G ++ + ++ Sbjct: 105 HYPVNGSMFSPAADYLLRVNGNSMEKIGILDGDLLAVHKTNYAKNGQVVVARVD-DEVTV 163 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K L + G I L N V+ +IE IA Sbjct: 164 KRLEKK-GDLIYLHPENDELEAIVVDPRIEYIEIEGIA 200 >gi|294676566|ref|YP_003577181.1| S24 family peptidase [Rhodobacter capsulatus SB 1003] gi|294475386|gb|ADE84774.1| peptidase, S24 family [Rhodobacter capsulatus SB 1003] Length = 203 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 61/202 (30%), Gaps = 20/202 (9%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK--EI 90 ++P + +R P + + + + L+ +++ + Sbjct: 1 MNPETLGGYERGDT-----SPDMQFLARYKQDFAVNLDWLITGDGEMFQSSAGSSQGLPA 55 Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--------YAIQTQDTRHKT 142 P++ F V E A + Sbjct: 56 PIMDFSQPDFVRLPVYNDVHASAGSGMVPASEQADGVVAFTRRFLANQGARPDHCSVIWA 115 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC- 201 + TSM P G +L+++ + + + + + ++ K R ++L+S N Sbjct: 116 RGTSMKPTIPDGALLVVDHSQREVEHGCIYVFNVSDRLLVKRARWRLDGRLELVSDNADE 175 Query: 202 -YPVDTVEM---SDIEWIARIL 219 YPV+T + + R++ Sbjct: 176 GYPVETFGAESVDQLRVVGRVV 197 >gi|167856622|ref|ZP_02479319.1| putative regulatory protein [Haemophilus parasuis 29755] gi|167852251|gb|EDS23568.1| putative regulatory protein [Haemophilus parasuis 29755] Length = 227 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 51/186 (27%), Gaps = 7/186 (3%) Query: 35 PTSFNKSKRFGI---EGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 + ++ K E R E + + + + T + I Sbjct: 29 KSYISQLKSGKSSFGERAARRLENEYGMPSFYLDYDEETESAIVSAISIQETHSHQYPIH 88 Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 L+ F F + +P ++ SM P Sbjct: 89 LINFKAKAGETGFINTNYPE--IIQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMAPTI 146 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS- 210 KGD++ +++ I + + I ++ K L G +S N Y ++ Sbjct: 147 NKGDVVFIDTTINYYDNEGVYIFAIDDEVYIKRLQKIPGGVYRALSDNKTYEPFDIKREI 206 Query: 211 -DIEWI 215 D I Sbjct: 207 LDTAII 212 >gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 340 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 10/162 (6%) Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++ +I L + T KK K+ + F + + Sbjct: 175 EVADELVPSIEDLRNEKLKKWETQYKKNKDYKNITCINKYGKVAAGIPSFACEDVEKLLY 234 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 +P ++ SM LY G+++I+ GD ++ G+ Sbjct: 235 LP------KKYFSPVYDYFALTINGDSMNKLYEDGEVIIVRKQNYARNGDIIIACIL-GE 287 Query: 180 IVAKVLIS-RRGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218 K + +L+ N + + +I + + Sbjct: 288 ATCKEYYFNKDDDKNELIPHSTNPKHKPKSYSNDEIIILGIV 329 Score = 37.8 bits (86), Expect = 0.97, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + LT LA++ + ++ + ++ +E PS + + N + Sbjct: 8 NNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVE-----PSIFFLINLANEMNCS 60 >gi|219854874|ref|YP_002471996.1| hypothetical protein CKR_1531 [Clostridium kluyveri NBRC 12016] gi|219568598|dbj|BAH06582.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 257 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 24/215 (11%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E +NLT +A L + +K + ++ P+ E++ + N +I Sbjct: 56 RLRELREENNLTQGAIASILNLTKANISKYELGRLQ-----PNIETLKLLSDHFNVSI-- 108 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + ++ + E ++ F + + PE S + + Sbjct: 109 DYLIGVTNIKKVESNYLSRIPIFQITKNHPSLFIAENIS---GYEYFDKPEELSKNYFFF 165 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 I+ K D++ + + +LI+ + I+ + ++ Sbjct: 166 KIEDNSM--------SNARIFKDDLVCIYKQDHIEDNKLMLIQVKNMGIILRRVLKCGDS 217 Query: 192 SIDLMSLNCCYPVDTVEMSDIE-----WIARILWA 221 I L N Y + D+E I + ++ Sbjct: 218 LIIL-PENHKYRPIALSKKDLEEDSFKVIGKAVYV 251 >gi|123968993|ref|YP_001009851.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. AS9601] gi|123199103|gb|ABM70744.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. AS9601] Length = 205 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 41/223 (18%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++E I + +PS + + GL + +S K L Sbjct: 13 QDELYEWIKEYMKNFQHSPSIRQMMQAMGLKSPA----------------PIQSRLKHLQ 56 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 Q E + + G G G T + Sbjct: 57 EKGYISWQ---------------EGKARTMQIVDEIIEGVPIMGSVAAGGLIETYSDVQE 101 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNS---AIQVNCGDRLLIKPRTGD 179 + + + SM+ GD++++ + + G + Sbjct: 102 NLDISDVLK-KKNVFALTVNGDSMIDACIADGDMVLMEPIKDSYSLRNGMIVSALVPGLG 160 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220 K + R G I L + N Y + + ++ + ++ +W Sbjct: 161 TTLKYFVKR-GGKIFLEAANPAYEPIELNLDEVIFQGKLLAVW 202 >gi|119898355|ref|YP_933568.1| LexA repressor [Azoarcus sp. BH72] gi|166224552|sp|A1K776|LEXA_AZOSB RecName: Full=LexA repressor gi|119670768|emb|CAL94681.1| repressor LexA [Azoarcus sp. BH72] Length = 202 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 52/175 (29%), Gaps = 5/175 (2%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R +E R P+ + + + + +E + Sbjct: 12 QQEILDFIRQTVESEGRPPTRAEVCSAFGFKSPNAAETHLRALAAKGAILLEEGRARGIR 71 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + G G GN E R + D + + SM Sbjct: 72 LAEAL--GLPLVGRVAAGNPILAAEHVEARIQFDPALFSPRADYLLRVRGMSMRDAGILD 129 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 GD++ ++ + + G ++ + D+ K L R G ++L+ N + V+ Sbjct: 130 GDLIAVHRSHEARNGQVVVARID-DDVTVKTL-RRNGPIVELLPANPDFDPIVVD 182 >gi|87122369|ref|ZP_01078250.1| regulator for SOS(lexA) regulon [Marinomonas sp. MED121] gi|86162344|gb|EAQ63628.1| regulator for SOS(lexA) regulon [Marinomonas sp. MED121] Length = 206 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 52/215 (24%), Gaps = 32/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + + I P + +A K G + + E Sbjct: 1 MIKLTKRQSDVMDTIRDFIAETGFPPTRAEIANKLGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K L + L G G G Sbjct: 45 EHLKALCKKGAIEILPGASRGLRIIDEASNDANTEL---------GLPIIGKVAAGYPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 D SM + +GD+L ++ V G ++ + Sbjct: 96 AQENVASHVQVPASMFSPQADYLLSVNGMSMKDVGIMEGDLLAVHKTSTVRNGQIVVARI 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K + G +I L++ N + V++ Sbjct: 156 -GDEVTVKRFEKK-GNTIRLIAENEEFNDILVDLE 188 >gi|261210193|ref|ZP_05924490.1| SOS-response repressor and protease LexA [Vibrio sp. RC341] gi|260840733|gb|EEX67282.1| SOS-response repressor and protease LexA [Vibrio sp. RC341] Length = 209 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIRSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPIL 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 97 AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G + L + N + V+++ Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189 >gi|309791896|ref|ZP_07686379.1| SOS-response transcriptional repressor, LexA [Oscillochloris trichoides DG6] gi|308226068|gb|EFO79813.1| SOS-response transcriptional repressor, LexA [Oscillochloris trichoides DG6] Length = 215 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 53/218 (24%), Gaps = 24/218 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +KI I +H P+ + + TS ++ + Sbjct: 11 QEKILNYIQEFFAKHGYWPAIRDIQTDLKISSTSVVAY---------------NLKALQD 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + T + +G V VP Sbjct: 56 KGKINRQGKVSRGITLPNTLGVHNGAHQVPLLGTITAGQPLPDPEEVDIEAAEKVDVPLD 115 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP-RTGDIV 181 + + + + + SM+ GDI++L N GD + + Sbjct: 116 LASADKL----KDVYALRVRGLSMIDALIDDGDIVLLRRQDSANNGDMVAALLLDENSVT 171 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + L N ++ R++ Sbjct: 172 LKKFY-QDNGRVRLQPANSTMQPIFTAAENVRIQGRVV 208 >gi|58583065|ref|YP_202081.1| LexA repressor [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577892|ref|YP_001914821.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A] gi|71648695|sp|Q5GX75|LEXA1_XANOR RecName: Full=LexA repressor 1 gi|58427659|gb|AAW76696.1| LexA repressor [Xanthomonas oryzae pv. oryzae KACC10331] gi|188522344|gb|ACD60289.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A] Length = 201 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + + + ++PS +A+ G R + + + Sbjct: 1 MPPLTPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++L G +P+L +G P G Sbjct: 53 GLIELLPN-------QKRGIRVPGGAGRDALLNLPVLGRVAAG---------VPIGA--- 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +G+ +++++ + Q SM+ GD++ ++ + + G ++ + Sbjct: 94 DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSKEARDGQIVVARV 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L I L+ N + V Sbjct: 153 D-GEITIKRLER-GTERIRLLPRNRAHAPIVVAAD 185 >gi|320013822|gb|ADV97393.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 202 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ + + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEEGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L+++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPSLFKPGADFLLRVNGMSMRDIGILDGDLLVVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNIVHLLPENSEFQPIVVDLRE 183 >gi|291296371|ref|YP_003507769.1| peptidase S24 and S26 domain-containing protein [Meiothermus ruber DSM 1279] gi|290471330|gb|ADD28749.1| peptidase S24 and S26 domain protein [Meiothermus ruber DSM 1279] Length = 241 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 27/218 (12%) Query: 13 IDRMAERHNLT-PSGLARKAGLDPTSFNKSK--RFGIEGRNRWPSTESIFKILAATNETI 69 I R ++ P+ A K G+ T+ + R G P +++++ A Sbjct: 32 IFAAMRRDGISKPNEWADKWGIGRTALRTAMVGRQSAAGTWVRPDIRTLWRLAKAL---- 87 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 D E+ L + G G+ + E P + Sbjct: 88 ---------DVPLVYLIERFYDDLEDVEALWPQIPIIGWVGAGSGSEE-DIREKYVPVDM 137 Query: 130 IYAIQTQDTRHKTQDTSMLPL---YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 A++ K + SM GD++I++ + G R++ + G+ V K+L Sbjct: 138 DIALRGSAVAFKVRGNSMCAGPKPICDGDVIIVDCRNKGRVGSRVVARLADGNYVCKLLK 197 Query: 187 SRRGRSIDLMSLNC----CYPVDTVEMSDI-EWIARIL 219 + L+S N YP + S + E + +++ Sbjct: 198 HGPNGNY-LVSANPSSDNSYPD-VIPASSVKEIVGKVI 233 >gi|293371159|ref|ZP_06617696.1| peptidase S24-like protein [Bacteroides ovatus SD CMC 3f] gi|292633817|gb|EFF52369.1| peptidase S24-like protein [Bacteroides ovatus SD CMC 3f] Length = 265 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 66/236 (27%), Gaps = 28/236 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M FS ++I + +D +T + G+ ++ S +++ Sbjct: 5 MRDFSILKQRILQYLDF----KGITKYECYKNTGITNGVLSQ---------PNGMSEDNL 51 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K L+ ++ L + + K ++ G Sbjct: 52 LKFLSYYSDISTDWLLAGCGSMLRDDNQAKISKIVPIESEFESIPIVDISVAAGYGCENP 111 Query: 119 GVPEIRSPHNGIY---AIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDR 170 E+ + Y + K + SM P LIL ++ Sbjct: 112 DFIEVVETISLPYNMLRRNRKYFCVKVRGESMSPTLLDCSYLILRLLDRSEWNEIKDNHV 171 Query: 171 LLIKPRTGDIVAKVL--ISRRGRSIDLMSLN---CCYPVDTVEMSDIEWIARILWA 221 ++ R+G K + R I S N YP + +I I + W Sbjct: 172 YVVSDRSGRAYVKRIKNRFREHGFIVCTSDNVDKANYPNFNLMEDEINTILYVEWY 227 >gi|15988318|pdb|1JHF|A Chain A, Lexa G85d Mutant gi|15988319|pdb|1JHF|B Chain B, Lexa G85d Mutant Length = 202 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAADEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|167553752|ref|ZP_02347498.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321891|gb|EDZ09730.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 139 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 7/129 (5%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + L + FP+ + + + + + + + K Sbjct: 1 MDFFRPTELRDIISLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAT 57 Query: 144 DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM+ GD+L+++S+ GD ++ G+ K L R ++ L +N Y Sbjct: 58 GDSMIDAGINDGDLLVVDSSRTAEHGDIVIAAVD-GEFTVKRLQLRP--TVQLNPMNSAY 114 Query: 203 PVDTVEMSD 211 V D Sbjct: 115 SPIIVGSED 123 >gi|148239417|ref|YP_001224804.1| SOS-regulated protein [Synechococcus sp. WH 7803] gi|147847956|emb|CAK23507.1| Bacterial UmuD protein homolog (SOS-regulated protein) [Synechococcus sp. WH 7803] Length = 147 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V V ++ + T + SM GD+L+++ ++ G ++ Sbjct: 38 ADDYVEV--GIDLNDQLIRHPTSTFFLRVSGDSMTGAGIHDGDLLVVDRSLDPRPGRVVV 95 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G K L RG+ + L + N YP + D++ Sbjct: 96 AVLD-GGFTLKRLARHRGQ-LRLEAANPDYPPLDLHRCGDVQI 136 >gi|763050|gb|AAA85499.1| repressor protein [Streptococcus phage T270] gi|1877427|gb|AAC48865.1| repressor [Streptococcus pyogenes phage T12] Length = 256 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 9/184 (4%) Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD---GRTTEKKEKEIPLLYFP 96 P E I L N T QL + T+ +++ Sbjct: 69 NMLNMDNPSTPTTPKVELIPSTLQKINSTSSQLEHKRQLNVLDYAETQLEQQNTGRKNHK 128 Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 P + + G V + Y D SM P Y GD Sbjct: 129 PPTTPSNYYDHAASAGTGQYLNDVQVEKIELPVDY---DADFVIPVYGDSMEPKYHSGDY 185 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWI 215 + + ++++ GD + GD K L+ + L SLN Y ++ D I Sbjct: 186 VFVKLSVELTDGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNSKYEDILIDRDSDFRII 243 Query: 216 ARIL 219 ++ Sbjct: 244 GEVV 247 >gi|300821563|ref|ZP_07101710.1| peptidase S24-like domain protein [Escherichia coli MS 119-7] gi|331667993|ref|ZP_08368849.1| putative repressor protein encoded within prophage [Escherichia coli TA271] gi|300526066|gb|EFK47135.1| peptidase S24-like domain protein [Escherichia coli MS 119-7] gi|331064803|gb|EGI36706.1| putative repressor protein encoded within prophage [Escherichia coli TA271] Length = 212 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 63/211 (29%), Gaps = 21/211 (9%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + I E I + NL L G S ++ G +R+ S S+ KIL Sbjct: 1 MSKQTISERITQRMHALNLKGKDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILK 58 Query: 64 AT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 N + + K +PLL + S + + Sbjct: 59 VNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSS 105 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRT 177 I S + I + SM G + ++ V G+ +L P+ Sbjct: 106 ITSCVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKG 165 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 + G I L+ N YP +E Sbjct: 166 TTTPVIRKLEIEGPDILLVPTNPRYPSIMLE 196 >gi|227327408|ref|ZP_03831432.1| LexA repressor [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|261820054|ref|YP_003258160.1| LexA repressor [Pectobacterium wasabiae WPP163] gi|417244|sp|Q04596|LEXA_PECCC RecName: Full=LexA repressor gi|41918|emb|CAA44871.1| lexA [Pectobacterium carotovorum] gi|261604067|gb|ACX86553.1| transcriptional repressor, LexA family [Pectobacterium wasabiae WPP163] Length = 202 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKVLTARQQQVYDLIRDHIAQTGMPPTRAEIAQQLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEETGIPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E R + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQEHIECRYQVDPAMFKPSADFLLRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQIVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++ L++ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNTVHLLAENEEFAPIVVDLRQ 183 >gi|317052100|ref|YP_004113216.1| peptidase S24/S26A/S26B [Desulfurispirillum indicum S5] gi|316947184|gb|ADU66660.1| Peptidase S24/S26A/S26B, conserved region [Desulfurispirillum indicum S5] Length = 165 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 7/108 (6%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V + + SM+ GDILI++ +++ GD ++ Sbjct: 56 ARDYVD--RSLDLNELCIRHPAATYFVRADGDSMIGAGIFSGDILIVDRSLEAADGDIII 113 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 G+++ K L + + L ++N YP + + S++E ++ Sbjct: 114 AC-LHGELLVKRLRLQ--GQVRLEAMNPDYPPLELHDESELEVFGVVI 158 >gi|167949822|ref|ZP_02536896.1| LexA repressor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 211 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 35/211 (16%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +I E I P + +A G S N ++ R + + ++L Sbjct: 7 QTQILELIRSHLADTGFPPTRAEIAEALGFR--SVNSAEEH-----LRALAKKGAIELLK 59 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T L G G G E Sbjct: 60 GT----------------------SRGIRLLEREMPEAGLPVVGQVAAGQPILAQEHIEE 97 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 R + D + Q SM + GD+L ++ + + G ++ + ++ Sbjct: 98 RYDFSPDLFQPRADYLLRVQGMSMKDIGIMDGDLLAVHCSQDAHNGQIVVARI-EDEVTV 156 Query: 183 KVLISRRGRS--IDLMSLNCCYPVDTVEMSD 211 K S + L+ N + V++ + Sbjct: 157 KRFFRDERSSHLVVLLPENDDFEPIRVDLRE 187 >gi|299144565|ref|ZP_07037638.1| repressor LexA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517548|gb|EFI41294.1| repressor LexA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 203 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 33/219 (15%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61 K I I R E P+ + K + TS +R +G + T+ Sbjct: 9 EKDILFFIKRFLESKGYPPTVREIGIKLNIKSTSTVHTSIERLENKGYLKKDPTK----- 63 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + + G G Sbjct: 64 -------------------PRAIEIIDNNDDVLMIKKKTVDIPIVGSVTAGMPILAYDNI 104 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E P + K + SM+ + GD +I+ + GD++ + + Sbjct: 105 EDTCPLPIEFVRDKNLFILKVKGESMINVGIFDGDYVIIEKSEYAKNGDKV-LALIGDES 163 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N V+ +++ + +I+ Sbjct: 164 TIKTFYKEKD-FYKLQPENDFMEPIYVK--ELKILGKII 199 >gi|152972907|ref|YP_001338053.1| LexA repressor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892515|ref|YP_002917249.1| LexA repressor [Klebsiella pneumoniae NTUH-K2044] gi|262045553|ref|ZP_06018574.1| LexA repressor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330004867|ref|ZP_08305049.1| repressor LexA [Klebsiella sp. MS 92-3] gi|166224634|sp|A6TGV2|LEXA_KLEP7 RecName: Full=LexA repressor gi|150957756|gb|ABR79786.1| LexA repressor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544831|dbj|BAH61182.1| LexA repressor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037112|gb|EEW38362.1| LexA repressor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536486|gb|EGF62828.1| repressor LexA [Klebsiella sp. MS 92-3] Length = 202 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGAIEIVSGASRGIRLLTEEEQGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSMFKPNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-EEVTVKRLKKQ-GNVVELLPENSEFSPIVVDLRQ 183 >gi|50119579|ref|YP_048746.1| LexA repressor [Pectobacterium atrosepticum SCRI1043] gi|71658812|sp|Q6D9I5|LEXA_ERWCT RecName: Full=LexA repressor gi|49610105|emb|CAG73545.1| LexA repressor [Pectobacterium atrosepticum SCRI1043] Length = 202 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + P + +A++ G R P+ Sbjct: 1 MKVLTARQQQVYDLIRDHIAHSGMPPTRAEIAQQLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEETGIPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E R + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQEHIECRYQVDPAMFKPSADFLLRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQIVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++ L++ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNTVHLLAENEEFAPIVVDLRQ 183 >gi|167751804|ref|ZP_02423931.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] gi|167660045|gb|EDS04175.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] Length = 224 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 15/218 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATNE 67 + + + + LT LA++ G+ + + + +R + + + + Sbjct: 3 GDRLKLLRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDWLDS 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + + +PL P G + T V I P+ Sbjct: 63 GEGEMFNAEPDLTAYMHRTDNTLPLQSVPLYSIEGTAGLVPLFADHA-QTRPVNFIHIPN 121 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI---QVNCGDRLLIKPRTGD---IV 181 + D SM PL + GDI++ + GD L+ I Sbjct: 122 -----LPKCDGAIYIVGDSMYPLLKSGDIVLYKQLKDIGDIFWGDMYLLSIDIDGEEYIT 176 Query: 182 AKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + R + L+S N + V + I +A + Sbjct: 177 VKYIQKSEREGYVKLVSQNPHHADKEVAVDRIRALALV 214 >gi|325921690|ref|ZP_08183524.1| SOS-response transcriptional repressor, LexA [Xanthomonas gardneri ATCC 19865] gi|325547830|gb|EGD18850.1| SOS-response transcriptional repressor, LexA [Xanthomonas gardneri ATCC 19865] Length = 205 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 33/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55 M S K+ + + R ++PS +A+ G + K + E Sbjct: 1 MEPLSPKRAAVLIFLQE-QARAGVSPSLAEIAQAFGFASRNAAQKHVQALAE-------- 51 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++ + +P+L +G P G Sbjct: 52 ---AGLIELLPNQKRGIRVPGRMRPDPARDAVLALPVLGRVAAG---------VPIGAD- 98 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 +G+ +++++ + Q SM+ GD++ ++ + G ++ + Sbjct: 99 --IGLDRQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNDARDGQIVVAR 155 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L I L+ N + V Sbjct: 156 VD-GEITIKRLER-GDERIRLLPRNRAHAPIVVAAD 189 >gi|322832500|ref|YP_004212527.1| Peptidase S24/S26A/S26B, conserved region [Rahnella sp. Y9602] gi|321167701|gb|ADW73400.1| Peptidase S24/S26A/S26B, conserved region [Rahnella sp. Y9602] Length = 222 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 63/220 (28%), Gaps = 11/220 (5%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ +I ++ + S A +PT ++ + I K Sbjct: 1 MKTNDEIRRDNARKLRDSAGGN-SSFAGLIEREPTQVSRVIGKNPTKKIGDDLARHIEKC 59 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + T ++ V + Sbjct: 60 FDLP-----DGWLDKEHQATNITSAPDVTDTELTIKMVPVISWVQAGAWTEIGYSEVDL- 113 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTGDI 180 + + + + SM+ YR GD++ ++ + GD ++ +G+ Sbjct: 114 SLSETYPCPVPCGSMTYILRVIGDSMIDEYRPGDMIFVDPEVAPVHGDDVIALLLDSGET 173 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 K L+ G L +LN +P +++ + I ++ Sbjct: 174 TFKRLVEDAGSKY-LKALNKGWPEQYIKIDGNCSIIGTVV 212 >gi|294102131|ref|YP_003553989.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293617111|gb|ADE57265.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 226 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 20/226 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S ++ I R+ + T LA G+ T+ ++ +P+ E++ K+ Sbjct: 1 MISGEE----IRRLRKAKGWTQQQLADNVGVAKTTIVDWEKDRY-----FPTGENVHKLS 51 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLY---FPPSGSGGFFDSGVFPTGNKWNTVG 119 + +I L+ + + + + L +G+ Sbjct: 52 RSLEVSIAYLMGETDNPIQIGKDNIFKDYDLIPVALISPEQTACCGAGMIDMDTTCEPEK 111 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + G Y T SM G ++ +N + D + G Sbjct: 112 ILVLSRREIGEYDPNRPPYAIHTDGVSMEGFGIPSGSVVFINPREHLESFDVC-LICYYG 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219 + K +I + + ++ S + + + E +++ Sbjct: 171 RLAIKKVIFKPNGNFEIFSDSED-DNREISKEEFDSGLFEIRGKVI 215 >gi|251791093|ref|YP_003005814.1| LexA repressor [Dickeya zeae Ech1591] gi|247539714|gb|ACT08335.1| SOS-response transcriptional repressor, LexA [Dickeya zeae Ech1591] Length = 203 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 37/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A + G R P+ Sbjct: 1 MKALTTRQQQVYDLIRDHIAQTGMPPTRAEIASQLGF-----------------RSPNAA 43 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + L G + G G G Sbjct: 44 E-------------EHLKALARKGVIEIVTGASRGIRLLMEEEDQGLPLIGRVAAGEPLL 90 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 91 AQQHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L++ N + V++ + Sbjct: 151 -EDEVTVKRLKKQ-GNVVQLLAENKDFAPIVVDLRE 184 >gi|21233670|ref|NP_639968.1| UV protection and mutation protein [Proteus vulgaris] gi|11245982|gb|AAG33672.1| MucA [IncT plasmid Rts-1] gi|21202854|dbj|BAB93570.1| UV protection and mutation protein [Proteus vulgaris] Length = 145 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 11/122 (9%) Query: 101 GGFFDSGVFPTGN-KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 G FP+ W + + H + + SM GD+L+ Sbjct: 19 FGELVPAGFPSPAAGWEEAEL----NLHTLVVTHPASTYFLRVTGDSMQDARIHSGDVLV 74 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216 ++ + G ++ + K LI R LM +N YP + D+E Sbjct: 75 VDRSETPEQGSIVVASID-NEFTVKKLILRPRSC--LMPMNPAYPPIYFDPESNDVEIWG 131 Query: 217 RI 218 + Sbjct: 132 VV 133 >gi|307708163|ref|ZP_07644630.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615609|gb|EFN94815.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 225 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 12/215 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E L LA G+ ++ K ++ + + + K+L + + Sbjct: 7 LKQKREELGLEQQELAELIGVSKQAYFKWEKGLS--KPTKVNIAKLEKVLKIPEGYLSED 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPEIRS 125 T +EK I + S S + + + ++ Sbjct: 65 EISSLYKQLTEPNQEKAITYVRDLLSSQKIVSISEKRSEYHVYEKLSAGIGASVYGDLDY 124 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 D SM P Y+ G++ ++ G + K + Sbjct: 125 DVVYYNEELPHDFASWVDRNSMEPTYQNGEVALIIETGFDYDG-AVYAVVWDSQTYIKKV 183 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + L+S++ YP + + +I+ Sbjct: 184 YREEEG-LRLVSIDKGYPDKFAPFDENPRVVGKIV 217 >gi|320322392|gb|EFW78486.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 201 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 44/178 (24%), Gaps = 10/178 (5%) Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 RW T K + + +Y + G + + Sbjct: 16 RWLRTGDGPKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSE 75 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + +P GI SM + G IL ++ + Sbjct: 76 APG--QKIRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGE 131 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 + G + + L + L S N YP + D I + I W S Sbjct: 132 IYALEHGGILRVRYLYRMPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 189 >gi|296876405|ref|ZP_06900457.1| phage transcriptional repressor [Streptococcus parasanguinis ATCC 15912] gi|296432695|gb|EFH18490.1| phage transcriptional repressor [Streptococcus parasanguinis ATCC 15912] Length = 254 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 26/229 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN-- 66 I E I + + L+R G+ ++ + E++ KI A Sbjct: 22 ISEKIRELLKEQGKKQIELSRITGIPASTLTGYVKGTSLPVP-----ENLEKIAAFFQVA 76 Query: 67 ---------------ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ + L +G LL + Sbjct: 77 VADIDPRLRNDFVVIDSEIERLYKQLDEGNQENLLSYGKSLLTHQKERQKIEKQYHSYSV 136 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + + + I S+ P Y KG ++++ G + Sbjct: 137 YDSFAAYQHQKQADIVWFDQKIPYDL-AFWIHTDSLEPKYEKGAVVLIKQTYYDQAG-AI 194 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G + K + I L+SLN Y + + + I +++ Sbjct: 195 YAIDFDGQTLIKRVFREANG-IRLVSLNKKYSDQIIPLDEEPGVIGKVI 242 >gi|258448877|ref|ZP_05696987.1| cI-like repressor [Staphylococcus aureus A6224] gi|257857914|gb|EEV80805.1| cI-like repressor [Staphylococcus aureus A6224] gi|329730605|gb|EGG66990.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus 21193] Length = 243 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 65/242 (26%), Gaps = 33/242 (13%) Query: 9 IWEAIDRMAERHNLTPSGLA--------RKAGLDPTSFNKSKRFGIEGRNRWPST----- 55 I E + ++ + N+T LA L +K + E R Sbjct: 3 IGEGLKKLRKNKNMTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYF 62 Query: 56 ----ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF------- 104 ++ T + + + ++ Sbjct: 63 NVKINDLYSESNTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNKVTSIDGYKESK 122 Query: 105 ---DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILI 158 TG +I +T D SM P+ ++G Sbjct: 123 LVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAF 182 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIAR 217 + + G L+ G + K + I+L+SLN Y V S+I+ + + Sbjct: 183 IKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGK 240 Query: 218 IL 219 ++ Sbjct: 241 VV 242 >gi|254361512|ref|ZP_04977651.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] gi|153093026|gb|EDN74047.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] Length = 227 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 4/189 (2%) Query: 35 PTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + ++ K R E+ + + + + + S E + + P+ Sbjct: 29 KSYISQLKSGKSSFGERAARRLENEYGMPSFYLDYDEETESAIVSAMSIQETQSHQYPIH 88 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 G ++ SM P K Sbjct: 89 LIDFKAKAGETGFVNTNYPEIIQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMSPTINK 148 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 GD++ +++ I + + I ++ K L G +S N Y ++ ++ Sbjct: 149 GDVVFIDTTINYYDNEGVYIFVIDDEVYIKRLQKIPGGIYRALSDNKTYEPFDIKRETLD 208 Query: 214 ---WIARIL 219 + + + Sbjct: 209 TAIILGKFI 217 >gi|253570494|ref|ZP_04847902.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251839443|gb|EES67526.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 265 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 65/236 (27%), Gaps = 28/236 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M FS ++I + +D +T + G+ ++ S +++ Sbjct: 5 MRDFSVLKQRILQYLDF----KGITKYECYKNTGITNGVLSQ---------PNGMSEDNL 51 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K L+ ++ L + + K ++ G Sbjct: 52 LKFLSYYSDISTDWLLAGCGSMLRDDNQTKISKIVPIESEFESIPIVDISVAAGYGCENP 111 Query: 119 GVPEIRSPHNGIY---AIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDR 170 E+ Y + K + SM P LIL ++ Sbjct: 112 DFIEVVETIRLPYNMLRRNRKYFCVKVRGESMSPTLLDCSYLILRLLDRSEWNEIKDNHV 171 Query: 171 LLIKPRTGDIVAKVL--ISRRGRSIDLMSLN---CCYPVDTVEMSDIEWIARILWA 221 ++ R+G K + R I S N YP + +I I + W Sbjct: 172 YVVSDRSGRAYVKRIKNRFREYGFIVCTSDNVDKANYPNFNLMEDEINTILYVEWY 227 >gi|325202165|gb|ADY97619.1| putative transcriptional regulator [Neisseria meningitidis M01-240149] Length = 151 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + + SM + GD +++N A + D L + D+ K + + Sbjct: 57 PEKLSVITVKGDSMEGVLNHGDSILINHAET-DPRDGLYVLRIGNDLFVKRVQRIP-GKL 114 Query: 194 DLMSLNCCYPVDTVEM----SDIEWIARILWA 221 + S N Y +++ DI I R+ W Sbjct: 115 LVTSENPRYAPFEIDLSNAQDDIAIIGRVEWY 146 >gi|166711026|ref|ZP_02242233.1| LexA repressor [Xanthomonas oryzae pv. oryzicola BLS256] Length = 201 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ + + + ++PS +A+ G R + + + Sbjct: 1 MPPLTPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++L G +P+L +G P G Sbjct: 53 GLIELLPN-------QKRGIRVPGGAGRDALLNLPVLGRVAAG---------VPIGA--- 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +G+ +++++ + Q SM+ GD++ ++ + + G ++ + Sbjct: 94 DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L I L+ N + V Sbjct: 153 D-GEITIKRLER-GTERIRLLPRNRAHAPIVVAAD 185 >gi|71910863|ref|YP_282413.1| phage transcriptional repressor [Streptococcus pyogenes phage 5005.1] gi|71853645|gb|AAZ51668.1| phage transcriptional repressor [Streptococcus pyogenes phage 5005.1] Length = 274 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 62/270 (22%), Gaps = 63/270 (23%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-------------------------- 41 K+ E I E L+ A K+GL + Sbjct: 2 KLGEIIKNFREEKKLSMDRFAEKSGLTKGYISMLEKNEHPKSKKPIIPTEETLLKVAKGM 61 Query: 42 -----------------------KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 K P+T + I + + L S Sbjct: 62 GVDIDFVLSKLDSDQEIQINISPKNMLNMDNPSTPTTPKVELIPSTLQKINSTSSQLEHS 121 Query: 79 DGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + G V + Sbjct: 122 RQIIVLDTAETLLEQQKEIKNNEDTIAELFSYNYYDHAASAGTGQYLNDVQVEKIELPVD 181 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 Y D SM P Y GD + + ++++ GD + GD K L+ Sbjct: 182 Y---DADFVIPVYGDSMEPKYHSGDYVFVKLSVELTDGDIGV-FEYYGDAYIKQLLINDE 237 Query: 191 RSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + L SLN Y ++ D I ++ Sbjct: 238 GAF-LHSLNSKYEDIPIDRDSDFRIIGEVV 266 >gi|239907530|ref|YP_002954271.1| UmuD protein [Desulfovibrio magneticus RS-1] gi|239797396|dbj|BAH76385.1| UmuD protein [Desulfovibrio magneticus RS-1] Length = 143 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM GDIL+++ A++ G ++ Sbjct: 34 AEDYID--KKIDLNEHLVRHPAATFFVRVDGDSMRDAGVASGDILVVDRALEAKDGSIVV 91 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L R + L+ N Y V + ++ Sbjct: 92 AALD-GELTVKRLRRR-DGKLLLVPENPDYQAVEVAPEASFMVWGVV 136 >gi|254362102|ref|ZP_04978223.1| LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] gi|153093661|gb|EDN74619.1| LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] Length = 149 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 7/126 (5%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 G G G V E P NG + D K SM + G Sbjct: 16 ANDEDEGLPLIGKVAAGTPILAVEHVENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDG 75 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---- 210 D+L ++ G ++ + ++ K L + G I L N V + Sbjct: 76 DLLAVHKTNTARNGQVVVARVN-DEVTVKRLEKK-GELIYLHPENDELKPIVVNPAQEYI 133 Query: 211 DIEWIA 216 +IE IA Sbjct: 134 EIEGIA 139 >gi|163846070|ref|YP_001634114.1| LexA repressor [Chloroflexus aurantiacus J-10-fl] gi|222523803|ref|YP_002568273.1| SOS-response transcriptional repressor, LexA [Chloroflexus sp. Y-400-fl] gi|163667359|gb|ABY33725.1| LexA repressor [Chloroflexus aurantiacus J-10-fl] gi|222447682|gb|ACM51948.1| SOS-response transcriptional repressor, LexA [Chloroflexus sp. Y-400-fl] Length = 216 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 50/218 (22%), Gaps = 22/218 (10%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +I++ I R + ++PS + R + TS E + KI+ Sbjct: 10 QAEIYQYIVRFIKERGISPSIRDIQRDLHISSTSVVSYNLDV---------LEKLGKIVR 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + P S + + Sbjct: 61 NDKISR--------GISLPGMVPALLRNDVGRVPLLGTITAGSPLPDPEEIDINRAEQVV 112 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181 K + SM+ GDI++L G + + Sbjct: 113 VPADVVPPERLNNVYALKVRGQSMIDALIDDGDIVLLRQQETAENGQMVAAWLIDENAVT 172 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + L N ++ R++ Sbjct: 173 LKKFY-LEDGRVRLQPANSTMQPIYTSPDNVRIRGRVI 209 >gi|304440240|ref|ZP_07400130.1| repressor LexA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371289|gb|EFM24905.1| repressor LexA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 205 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 46/213 (21%), Gaps = 25/213 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + E + PS + ST ++ + Sbjct: 11 DILLFIKKYIENNGYPPS------------VREICNGCSIK-----STSTVHAAMEKLEL 53 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L + G G E P Sbjct: 54 LDY---IRKDPSKPRAIEILDPSDDLLLAKKKTVDIPIVGTVTAGMPILAFDNIEDTFPL 110 Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 +A K + SM+ GD +I+ GD++ + + K Sbjct: 111 PLDFAKDKDLFILKVKGESMINAGILDGDFVIIEKRSSARNGDKV-LALIGDEATIKTYY 169 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L N ++ + I+ Sbjct: 170 KEED-RFRLQPENEFMDPIY--TKELIILGHIV 199 >gi|330816008|ref|YP_004359713.1| putative phage repressor [Burkholderia gladioli BSR3] gi|327368401|gb|AEA59757.1| putative phage repressor [Burkholderia gladioli BSR3] Length = 249 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 74/238 (31%), Gaps = 24/238 (10%) Query: 3 SFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESI 58 ++ +I A + +R T LA A + ++ K E G+ + E Sbjct: 1 MKTNDEIRRANLTVAIKRFG-TAKKLAEAADVSVAYLSQVKNGQPESRTGKPKNMGDEVA 59 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKE-------------KEIPLLYFPPSGSGGFFD 105 KI AA E + S R + L Y S + Sbjct: 60 RKIEAALGEPAGWMDADHSSVSRISIDTAEIGSQKTSLSDTFSPSLLHYPVSSKNFRNVF 119 Query: 106 SGVFPTGNKWNTVG----VPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILN 160 G + P + A SM P + G+ ++ Sbjct: 120 VIGRAQGGLPERIWTDGGYPVGIADEYAEIATADPHAFLVPVVGGSMAPRFNPGEFALIE 179 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 A + + D +L++ +G + K L+SRRG I L S T +I W+ + Sbjct: 180 PATEPDIEDDVLVRLASGVTMLKRLLSRRGGMIRLGSY-AEAETHTFAPEEISWMYYV 236 >gi|319943956|ref|ZP_08018236.1| LexA repressor [Lautropia mirabilis ATCC 51599] gi|319742717|gb|EFV95124.1| LexA repressor [Lautropia mirabilis ATCC 51599] Length = 263 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 69/254 (27%), Gaps = 39/254 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAG-------------LDPTSFNKSKR 43 M + +++ I ++ P + +A G L + Sbjct: 1 MRPLTARQREVLAQIQAHLDQTGFPPTRAEIASALGFRSVNAAEDHLKALARKGMIELCA 60 Query: 44 FGIEGRNRWPSTE-SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP------ 96 G P+ E S+ + ++G T + + + + Sbjct: 61 GTSRGIRLLPAAEGSLEGAIHPAASGTAGHATARGANGTTLTRGGRSVTVRGLGAGAMER 120 Query: 97 --------PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 S S G G+ E + + D + + SM Sbjct: 121 AAAAGLLGSSPSISLPLVGRVAAGHPILAESHIEASFTLDASLFERHPDYLLRIRGDSMR 180 Query: 149 PL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDT 206 GD+L + + + G ++ + ++ K L ++L+ N Y Sbjct: 181 DAGMLDGDLLAVKATSDAHNGQIVVAR-LGQEVTVKRLHRNGLNGPVELLPENPAYEPIV 239 Query: 207 VEMS----DIEWIA 216 V + IE I Sbjct: 240 VPVGTRDFHIEGIG 253 >gi|300713283|ref|YP_003739322.1| DNA polymerase V subunit [Erwinia billingiae Eb661] gi|299060354|emb|CAX53604.1| DNA polymerase V subunit [Erwinia billingiae Eb661] Length = 142 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 7/117 (5%) Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163 + FP+ + V + + + SM + GD+++++ + Sbjct: 25 CAAGFPSPAA-DYVE--AALDLNELCIRHRAATYFVRASGNSMTDAGIKDGDLMVVDKSE 81 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 + + GD ++ G+ KVL R + L +N +P + +E + W Sbjct: 82 KPSHGDIVIAAVD-GEFTVKVLQLRP--RLALQPMNPAFPTIYPDPDALEIFGVVTW 135 >gi|118497942|ref|YP_898992.1| prophage repressor protein [Francisella tularensis subsp. novicida U112] gi|194323164|ref|ZP_03056948.1| helix-turn-helix domain protein [Francisella tularensis subsp. novicida FTE] gi|118423848|gb|ABK90238.1| prophage repressor protein [Francisella novicida U112] gi|194322528|gb|EDX20008.1| helix-turn-helix domain protein [Francisella tularensis subsp. novicida FTE] Length = 217 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 +L + +G + P + + +P+ Sbjct: 63 PSDTSIITVANVP------VLSYVQAGEFTESQENIDP----IDYLQIPDSL-------- 104 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SM P +G+ ++++ D++++ Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVI 209 >gi|45658153|ref|YP_002239.1| LexA repressor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601395|gb|AAS70876.1| transcriptional repressor (LexA family) [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 206 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 54/210 (25%), Gaps = 30/210 (14%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + K+ + I + + P+ + + G+ Sbjct: 4 MKDLTDKQQAVLAFITAIIKERGFPPTIREIGDEFGITAK-----------------GAY 46 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + + E P +F N + Sbjct: 47 DHLKAIEKKGYLKTAKNQSRAIELIRQSPMESLPVQATSIPVIGQVAAGLPIFAEENIES 106 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + VP+ + N + Q SM+ + GDI I+ G+ ++ Sbjct: 107 YIPVPDEMAKGNVP------MYALRVQGDSMIEVGINDGDIAIIEKRDIARNGEIVVALI 160 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 + KV + + I L + N Y Sbjct: 161 -EDEATLKVYYKEQDQ-IRLEARNPKYKPI 188 >gi|254526959|ref|ZP_05139011.1| LexA repressor [Prochlorococcus marinus str. MIT 9202] gi|221538383|gb|EEE40836.1| LexA repressor [Prochlorococcus marinus str. MIT 9202] Length = 205 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/189 (9%), Positives = 53/189 (28%), Gaps = 8/189 (4%) Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + + ++ PS + + + + Q + +E + + Sbjct: 16 LYRWIKEYMKNFQHSPSIRQMMQAMGLKSPAPIQSRLKHLQEKGYISWQEGKARTMQIVD 75 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 G G T + + + + SM+ GD+ Sbjct: 76 EIIESVPIMGSVAAGGLIETYSDVQDNLDISDVLK-KKNVFALTVNGDSMIDACIADGDM 134 Query: 157 LILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 +++ + + G + K + + I L + N Y + + ++ Sbjct: 135 VLMEPITDSSSLRNGTIVSALVPGLGTTLKYFVKKE-GKIFLEAANPAYEPIELNLEEVV 193 Query: 214 WIARI--LW 220 + ++ +W Sbjct: 194 FQGKLLAVW 202 >gi|71733236|ref|YP_274592.1| S24 family peptidase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553789|gb|AAZ33000.1| peptidase, S24 family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 240 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 19/218 (8%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA---------TNETI 69 + + +A K + + + + NR E + + + ++ Sbjct: 18 QFGGVKAKIAAKLEREASYIARCLSLTVAPENRKKIGEDFARHIEERLGLERYALDSPSL 77 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIRSPHN 128 G + E + P + G V P+ S Sbjct: 78 NAGKRDDAGGGVASSASEPSNVAMIAQPERMYRYPVVSWVTAGTWSEAVQPFPDGFSDRY 137 Query: 129 GI--YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181 + Y + + + SM P +G +++++ V G ++ + + Sbjct: 138 DVSDYKAKGPAFWLEVKGDSMTSTSAPSIPEGSQILVDTEADVRPGKLVIAKLADSNEAT 197 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ G L LN YP D + I ++ Sbjct: 198 FKKLVEDGGVRY-LKPLNPAYPTVQCS-DDCKIIGVVV 233 >gi|169633042|ref|YP_001706778.1| putative repressor protein from bacteriophage [Acinetobacter baumannii SDF] gi|169151834|emb|CAP00666.1| putative repressor protein from bacteriophage [Acinetobacter baumannii] Length = 254 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 33/217 (15%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 LAR G+ P S + G+++ E++ + N L +T+ Sbjct: 24 ELARAVGVKPPSVSDWL----SGKSKTMEGENLLRASKFLNVNPSWLASGTGEIQTSTKD 79 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN----------------- 128 K K++ + F + D + +P + Sbjct: 80 KFKQLDIEEFKKKYNISDSDEALL-FSTIIEKPFIPSSKRWVPVKAYSKMGMDGYFTDIG 138 Query: 129 ----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + ++ K SM P R G ++ + + + + + + G Sbjct: 139 YEGNAGDGYVPTHTAGSRAYAVKGTGDSMFPAIRNGWYVVCDPDADLVPNEFVQVCLKDG 198 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 K + G + L+S+N EM ++E I Sbjct: 199 RCTIKEFVGINGGVLSLLSVNGG-ERFFFEMDEVESI 234 >gi|283470765|emb|CAQ49976.1| phage repressor [Staphylococcus aureus subsp. aureus ST398] Length = 243 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 65/242 (26%), Gaps = 33/242 (13%) Query: 9 IWEAIDRMAERHNLTPSGLA--------RKAGLDPTSFNKSKRFGIEGRNRWPST----- 55 I E + ++ + N+T LA L +K + E R Sbjct: 3 IGEGLKKLRKNKNMTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYF 62 Query: 56 ----ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF------- 104 ++ T + + L ++ Sbjct: 63 NVKINDLYSESNTTYKDDNDITSLYNKLTPPRQENVLNYANEQLEEQNKVTSIDGYKESK 122 Query: 105 ---DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILI 158 TG +I +T D SM P+ ++G Sbjct: 123 LVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAF 182 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIAR 217 + + G L+ G + K + I+L+SLN Y V S+I+ + + Sbjct: 183 IKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGK 240 Query: 218 IL 219 ++ Sbjct: 241 VV 242 >gi|328949504|ref|YP_004366840.1| putative phage repressor [Treponema succinifaciens DSM 2489] gi|328449828|gb|AEB15543.1| putative phage repressor [Treponema succinifaciens DSM 2489] Length = 206 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 61/211 (28%), Gaps = 20/211 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 W + + + + LA +GL + +R PS + IL N T Sbjct: 7 WTKVKKRLKELDKKQDWLASNSGLLVQTLRN-----NIHNDRLPSLKDTLSILKTLNLTW 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + P + + + G + + V VP Sbjct: 62 EEFEHYPNLTSKDGIRNIPVGEQYFSAGHGQHVPDNYVETK-----DYVAVPNSLKYLGD 116 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + SM P + DI+I ++ + + + K L + Sbjct: 117 ------NIRAAYVRGDSMEPTFFDSDIIIYDTNG-YDGNEGIYAIIYNSKGFVKRLQPTK 169 Query: 190 GRSIDLMSLNCCYPVD--TVEMSDIEWIARI 218 ++++S N Y + E D I R+ Sbjct: 170 NG-VNIISDNKIYEPMFESSESDDFIVIGRV 199 >gi|309787529|ref|ZP_07682141.1| lexA repressor [Shigella dysenteriae 1617] gi|308925107|gb|EFP70602.1| lexA repressor [Shigella dysenteriae 1617] gi|323174430|gb|EFZ60055.1| lexA repressor [Escherichia coli LT-68] gi|333014426|gb|EGK33777.1| lexA repressor [Shigella flexneri K-227] Length = 192 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 3/160 (1%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 P+ I + L + + + E + G G G Sbjct: 16 PTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAG 75 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171 E + D + SM + GD+L ++ V G + Sbjct: 76 EPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVV 135 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 + + ++ K L + G ++L+ N + V++ Sbjct: 136 VARID-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 173 >gi|50914370|ref|YP_060342.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|50903444|gb|AAT87159.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 262 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 65/245 (26%), Gaps = 39/245 (15%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I I+ + +NL LA + +SFN+ + P+ ++ KI Sbjct: 17 KIISAKINSLLLENNLKQGHLADALEIPRSSFNEYVKGNS-----LPNPGNVQKIADYFG 71 Query: 67 ETICQLLDLPFSDGRTTE-------------------KKEKEIPLLYFPPSGSGGFFDSG 107 + + E ++ +L F + Sbjct: 72 LMKSDIDPRFAPRKKNHELKIPTSPLVKKITTTVVELNVPRKQKVLDFATEQLKEQKNKI 131 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGD 155 + ++ + Y D SM P Y G+ Sbjct: 132 TSIEKKLYEYKVYEKLSAGTGYGYFGDGNYDTVFYDEELDYDFASWVFGDSMEPTYVNGE 191 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EW 214 ++++ G G K + + + L+SLN Y S+ Sbjct: 192 VVLIKQTGFDYEGGI-YAVEWDGQTYIKKVYREKDG-LRLVSLNKKYNDKFAPFSEGPRI 249 Query: 215 IARIL 219 I I+ Sbjct: 250 IGEIV 254 >gi|208779650|ref|ZP_03246995.1| helix-turn-helix domain protein [Francisella novicida FTG] gi|208744611|gb|EDZ90910.1| helix-turn-helix domain protein [Francisella novicida FTG] Length = 217 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 +L + +G + P + + +P+ Sbjct: 63 PSDTSIITVANVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SM P +G+ ++++ D++++ Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVI 209 >gi|74317501|ref|YP_315241.1| SOS-response transcriptional repressor, LexA [Thiobacillus denitrificans ATCC 25259] gi|74056996|gb|AAZ97436.1| peptidase S24, LexA repressor [Thiobacillus denitrificans ATCC 25259] Length = 261 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 42/223 (18%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++I I + P + +A+ G N +++ + Sbjct: 62 MRDLTPRQEEILNLIREWIDTTGSPPTRAEIAQHFGFSSP--NAAEQH----------LK 109 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + G GG G G+ Sbjct: 110 TLAK---------------------KGALELVSGASRGIRLPGGGGLAVVGQVAAGSPIL 148 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K + SM + GD+L ++ + + G ++ + Sbjct: 149 AQENIERHVQVDTALFSPRADYLLKVRGQSMKDIGILDGDLLAVHRSAEARAGQVVVARI 208 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEWIA 216 ++ K R G ++ L+ N + V++ ++ Sbjct: 209 -GDEVTVKRFQKR-GHTVQLLPENADFEPIVVDLKRQELVIEG 249 >gi|134300463|ref|YP_001113959.1| putative prophage repressor [Desulfotomaculum reducens MI-1] gi|134053163|gb|ABO51134.1| putative prophage repressor [Desulfotomaculum reducens MI-1] Length = 205 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 64/224 (28%), Gaps = 33/224 (14%) Query: 1 MTSFSHKKIW--EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + + E + + E N LA L P + +K +E P +I Sbjct: 1 MVETTFDILKFSERLKELMENSNYNTYSLAEAVFLTPGTISKYVNAKME-----PKRNTI 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L+ + + + + + + + V Sbjct: 56 ELLAKHFQVNPAWLMGYDVDKWLDGQAPKAKTIPFIKSANYADNEI--------DGYEVV 107 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E QD SM+ +GDI ++ V G+ + Sbjct: 108 SSSEEIDLS------------FLVQDNSMINARIFEGDIAYISKQSTVENGEIAAVVID- 154 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARI 218 G I K L SI L S N P + + DI + ++ Sbjct: 155 GAITLKRLY-MMDNSIVLHSENPTIPDKVLSKKDKKDITILGKV 197 >gi|319775719|ref|YP_004138207.1| hypothetical protein HICON_10620 [Haemophilus influenzae F3047] gi|317450310|emb|CBY86526.1| conserved hypothetical protein [Haemophilus influenzae F3047] Length = 322 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 31/256 (12%), Positives = 69/256 (26%), Gaps = 48/256 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ S E + + + + A G+ S K G R P I + Sbjct: 68 MTTLS-----ERLKALLVEKGINQTEFANMIGIAQPSMQKIL----AGETRNPR--KIVE 116 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94 I T LL + +T + + + L Sbjct: 117 IAKELGTTPDYLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLQKQQVSLK 176 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQDT 145 P+ F P + + Sbjct: 177 TKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFNE 236 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PV 204 SM P+ K D++ +++ + G+ + + ++ + L ++ ++ N Sbjct: 237 SMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGSS 296 Query: 205 DTV-EMSDIEWIARIL 219 + ++S + + R + Sbjct: 297 FEIDDLSRLNVLGRCV 312 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 11/79 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ E + + N+T + LA G + + + + + R +I + Sbjct: 1 MTTL-----GERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49 Query: 61 ILAATNETICQLLDLPFSD 79 I A L Sbjct: 50 IANALGVDPNWLKYGSTKM 68 >gi|298387177|ref|ZP_06996730.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298259846|gb|EFI02717.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 265 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 26/228 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I + +D +T + G+ ++ S +++ K L+ + Sbjct: 13 QRILQYLDF----KGITKYECYKNTGITNGVLSQ---------PNGMSEDNLLKFLSYYS 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L + + K ++ G E+ Sbjct: 60 DISTDWLLAGCGSMLRDDNQTKISKIIPIESEFESIPIVDISVAAGYGCENPDFIEVVET 119 Query: 127 HNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTG 178 Y + + K + SM P LIL ++ ++ R+G Sbjct: 120 IRLPYNMLHRNRKYFCVKVRGESMSPTLLDCSYLILRLLDRSEWNEIKDNHVYVVSDRSG 179 Query: 179 DIVAKVL--ISRRGRSIDLMSLN---CCYPVDTVEMSDIEWIARILWA 221 K + I S N YP + +I I + W Sbjct: 180 RAYVKRIKNRFHEHGFIVCTSDNVDKANYPNFNLMEDEINTILYVEWY 227 >gi|149371840|ref|ZP_01891159.1| transcriptional regulator [unidentified eubacterium SCB49] gi|149354980|gb|EDM43541.1| transcriptional regulator [unidentified eubacterium SCB49] Length = 256 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 59/218 (27%), Gaps = 17/218 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 ++ E T A+ + T+ +R + S + ++L Sbjct: 10 RRFKKVREEQGYTQQSFAQLLKIGATT-ADIERGKTK-----ISGLVVMELLQQFGINPL 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L ++ + + ++ + Sbjct: 64 WLFGKSYTKVINIDGGDVSPKVVTL-DIEQNETIALVNQKAAAGYPHNIQDVDWYETLPA 122 Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVA 182 + I + + SMLP R + ++ + ++ I ++ Sbjct: 123 FNIPLPQYRNATYRGFQVEGDSMLPNIRPNEWVLGKAVPNVSEASDSKIYIIVLRDSVLV 182 Query: 183 KVLISRRG--RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L + L+SLN Y V + DI+ + + Sbjct: 183 KKLQKVPNSHGKVRLISLNPEYLPIDVSIIDIQEMWLV 220 >gi|253686915|ref|YP_003016105.1| SOS-response transcriptional repressor, LexA [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494478|sp|C6DKD2|LEXA_PECCP RecName: Full=LexA repressor gi|251753493|gb|ACT11569.1| SOS-response transcriptional repressor, LexA [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 202 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKVLTARQQQVYDLIRDHIAQTGMPPTRAEIAQQLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEETGIPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQEHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTEDVRNGQIVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L++ N + V++ Sbjct: 150 D-DEVTVKRLKKQ-GNMVHLLAENEEFAPIVVDLRQ 183 >gi|238920196|ref|YP_002933711.1| repressor protein CI [Edwardsiella ictaluri 93-146] gi|238869765|gb|ACR69476.1| repressor protein CI [Edwardsiella ictaluri 93-146] Length = 223 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 23/198 (11%), Positives = 61/198 (30%), Gaps = 6/198 (3%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 LARK +P+ ++ + + + + + + I +A + + Sbjct: 25 DLARKISREPSYISRMLYPEGKKQKKRIADDMVEVIESAFGLPRGWMDRINDGYHDEKSI 84 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 L+ + + + + + + Sbjct: 85 SSINKYPLFTTVQAGAFTSTPESYAEKDAKAWIETSKKAGSRSFWLEVDGASMTAPA--- 141 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 P + +G +++++ V D + + + K LI G + L LN +P+ Sbjct: 142 GNRPSFPEGMLILVDPDQDVEVNDFCIARVNGNEFTFKKLIRDSGINY-LQPLNPQFPLL 200 Query: 206 TVEMSDIEWIARILWASQ 223 T ++ +++ SQ Sbjct: 201 TCS-DGCTFVGKVIM-SQ 216 >gi|585395|sp|Q07267|LEXA_PRORE RecName: Full=LexA repressor gi|297815|emb|CAA50300.1| LexA repressor [Providencia rettgeri] Length = 205 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 37/217 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + +++++ + + + P + +A G R P+ Sbjct: 1 MKALTARQQQVYDLVRDHISQTGMPPTRAEIAASLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA + I LL + G G G Sbjct: 44 EEHLKALARKGV------------IEIVSGASRGIRLLLEEETEDQGLPLIGRVAAGEPL 91 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + D + SM + GD+L ++ V+ G ++ + Sbjct: 92 LAQEHIESHYQVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNVHNGQVVVAR 151 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K ++G ++L++ N + V++ Sbjct: 152 I-EDEVTVKRF-KQQGNRVELIAENPEFEPIVVDLRQ 186 >gi|118578636|ref|YP_899886.1| SOS-response transcriptional repressor LexA [Pelobacter propionicus DSM 2379] gi|118501346|gb|ABK97828.1| SOS-response transcriptional repressor, LexA [Pelobacter propionicus DSM 2379] Length = 200 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 60/225 (26%), Gaps = 38/225 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +K+ + I + ++ P+ +A G+ T Sbjct: 1 MIPLTDRQQKVLDFITSFIKTNSFPPTWRDIAAHLGITST-------------------- 40 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + LD G +L S G G+ Sbjct: 41 ----------FGVNRHLDALEKKGWIKRAGTSRRIVLTSQEVRSISLPIVGTVRAGHLQP 90 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 V + + + + SM+ GD+ ++ + D +++ Sbjct: 91 AVEDIQGFFAVDQEQVKGDGCFLLRVKGDSMIGAGIFDGDLALVRPQPVADNRDTVVVMV 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G+ K + I L N V D+ + +++ Sbjct: 151 D-GEATLKWFHREQN-RIRLQPANPNMAPIFVGPDKDVSIVGKVI 193 >gi|268591548|ref|ZP_06125769.1| repressor LexA [Providencia rettgeri DSM 1131] gi|291313002|gb|EFE53455.1| repressor LexA [Providencia rettgeri DSM 1131] Length = 205 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 37/217 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + +++++ + + + P + +A G R P+ Sbjct: 1 MKALTARQQQVYDLVRDHISQTGMPPTRAEIAASLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA + I LL + G G G Sbjct: 44 EEHLKALARKGV------------IEIVSGASRGIRLLLEEETEDQGLPLIGRVAAGEPL 91 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + D + SM + GD+L ++ V+ G ++ + Sbjct: 92 LAQEHIESHYQVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNVHNGQVVVAR 151 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K ++G ++L++ N + V++ Sbjct: 152 I-EDEVTVKRF-KQQGNRVELIAENPEFEPIIVDLRQ 186 >gi|153954271|ref|YP_001395036.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347152|gb|EDK33688.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 207 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 24/215 (11%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E +NLT +A L + +K + ++ P+ E++ + N +I Sbjct: 6 RLRELREENNLTQGAIASILNLTKANISKYELGRLQ-----PNIETLKLLSDHFNVSI-- 58 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + ++ + E ++ F + + PE S + + Sbjct: 59 DYLIGVTNIKKVESNYLSRIPIFQITKNHPSLFIAENIS---GYEYFDKPEELSKNYFFF 115 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 I+ K D++ + + +LI+ + I+ + ++ Sbjct: 116 KIEDNSM--------SNARIFKDDLVCIYKQDHIEDNKLMLIQVKNMGIILRRVLKCGDS 167 Query: 192 SIDLMSLNCCYPVDTVEMSDIE-----WIARILWA 221 I L N Y + D+E I + ++ Sbjct: 168 LIIL-PENHKYRPIALSKKDLEEDSFKVIGKAVYV 201 >gi|126010900|ref|YP_001039870.1| putative repressor protein [Vibrio phage VP882] gi|123203910|gb|ABM73422.1| putative repressor protein [Vibrio phage VP882] Length = 243 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 23/218 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I R+ + T + + + ++ +R + PS I + Sbjct: 31 GNVIRRLRKAKGWTLQRVCEEMNGAIQTGHLSRIERGELT-----PSVYIARNIARSLGT 85 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSP 126 ++ +L + + +G + S + V P Sbjct: 86 SLDTMLAEADGGPLAQVVPDPAQRVPVLSWVQAGLWTSSPTGVVPELCDKWVVAPRA--- 142 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRT-GDIV 181 + + + + SM + +G +I++ ++ + Sbjct: 143 -----KLPPRCYALEVRGDSMQAQYGMSFPEGCYIIVDPNRVPENKSFVVAMQTNAEEAT 197 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K LI L LN YP+ ++ ++ ++ Sbjct: 198 FKQLIIEGADKY-LKPLNPQYPLLKID-QEVITCGVVI 233 >gi|300724726|ref|YP_003714051.1| SOS response transcriptional repressor [Xenorhabdus nematophila ATCC 19061] gi|297631268|emb|CBJ91963.1| transcriptional repressor for SOS response (signal peptidase of LexA family) [Xenorhabdus nematophila ATCC 19061] Length = 205 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 37/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + ++++ + + + P + +A + G R P+ Sbjct: 1 MKALTARQQQVYNLVRDHISQTGMPPTRAEIAARLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA + I LL + G G G Sbjct: 44 EEHLKALARKGV------------IEIISGASRGIRLLREAENEGAGLPLIGRVAAGEPL 91 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + + D + SM + GD+L ++ V+ G ++ + Sbjct: 92 LAQEHIESHYKVDPELFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVHNGQVIVAR 151 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K + G I+L++ N + + V++S Sbjct: 152 I-EDEVTVKRF-RQAGNRIELIAENPEFELIVVDLS 185 >gi|238912035|ref|ZP_04655872.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 139 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 7/129 (5%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + + L + FP+ + + + + + + + K Sbjct: 1 MEFFRPTELREIIYLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAT 57 Query: 144 DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM+ GD+L+++S+ GD ++ G+ K L R ++ L +N Y Sbjct: 58 GDSMIDAGINDGDLLVVDSSRTAEHGDIVIAAVD-GEFTVKRLQLRP--TVQLNPMNSAY 114 Query: 203 PVDTVEMSD 211 V D Sbjct: 115 SPIIVGSED 123 >gi|294827875|ref|NP_711628.2| transcriptional repressor LexA [Leptospira interrogans serovar Lai str. 56601] gi|29427775|sp|Q8F663|LEXA_LEPIN RecName: Full=LexA repressor gi|73920224|sp|P61611|LEXA_LEPIC RecName: Full=LexA repressor gi|293385720|gb|AAN48646.2| transcriptional repressor LexA [Leptospira interrogans serovar Lai str. 56601] Length = 203 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 54/210 (25%), Gaps = 30/210 (14%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + K+ + I + + P+ + + G+ Sbjct: 1 MKDLTDKQQAVLAFITAIIKERGFPPTIREIGDEFGITAK-----------------GAY 43 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + + E P +F N + Sbjct: 44 DHLKAIEKKGYLKTAKNQSRAIELIRQSPMESLPVQATSIPVIGQVAAGLPIFAEENIES 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + VP+ + N + Q SM+ + GDI I+ G+ ++ Sbjct: 104 YIPVPDEMAKGNVP------MYALRVQGDSMIEVGINDGDIAIIEKRDIARNGEIVVALI 157 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 + KV + + I L + N Y Sbjct: 158 -EDEATLKVYYKEQDQ-IRLEARNPKYKPI 185 >gi|291615809|ref|YP_003518551.1| LexA [Pantoea ananatis LMG 20103] gi|291150839|gb|ADD75423.1| LexA [Pantoea ananatis LMG 20103] Length = 252 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 38/214 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + +++++ I + + P + +A + G R P+ Sbjct: 49 MKALTSRQQQVYDLIRDHINQTGMPPTRAEIAAQLGF-----------------RSPNAA 91 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA L S G G G Sbjct: 92 EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEPSEGLPLIGRVAAGEPL 138 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + + D + SM + GD+L ++ V G ++ + Sbjct: 139 LAQEHIETHYKVDPDMFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 198 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ K + G + L+ N + V+ Sbjct: 199 ID-DEVTVKRWKKQ-GSVVHLLPENNDFEPIVVD 230 >gi|295099517|emb|CBK88606.1| Predicted transcriptional regulator [Eubacterium cylindroides T2-87] Length = 238 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 60/222 (27%), Gaps = 19/222 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I R ++ L+ G ++ + + + + I Sbjct: 15 IGKQIKEGRTRKGISLDTLSDLIGGIKTKSTLKRYEDGNSR-----IEMDVLKMICDQIG 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRS 125 ++ + + + G+ + P+ Sbjct: 70 LDYLDVISKARESLNKDQVETLSK--VNIIFDDYFPLHYCTNLSAGSPTELLEAEPDAVV 127 Query: 126 PHNGIYAIQTQ-DTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVA 182 + + + + TSM + + G I++ + G ++ GD Sbjct: 128 YVPIKFQNRKKRLHAFQVNGTSMNNVIQDGSIVVAEEVPDTVLKEGTIVV-AWLNGDATV 186 Query: 183 KVLISRRGRSIDLMSLNCC--YPVDTV--EMSDIEWIARILW 220 K L + LM + + + + I + R++W Sbjct: 187 KRLYP-GDSQVTLMPDSTDKGHQPIIINTDEDQIYILGRVIW 227 >gi|319956938|ref|YP_004168201.1| phage repressor [Nitratifractor salsuginis DSM 16511] gi|319419342|gb|ADV46452.1| putative phage repressor [Nitratifractor salsuginis DSM 16511] Length = 200 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 22/214 (10%), Positives = 54/214 (25%), Gaps = 33/214 (15%) Query: 3 SFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +H+K + + + LA D ++ + + + Sbjct: 1 MKTHEK----LKMLLREKGRGAQTKLAEMLNEDKGFVSRWVSG-----KQEIPKSKLKAV 51 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 N T+ ++ + S G + + VP Sbjct: 52 ANYLNVTV--------DYLLDETQEIPLNRYIPLIGEASCGVPTGAFY---ESDEYIAVP 100 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + K SM P G+I++ ++ + ++ G+ Sbjct: 101 PGVDA--------SSSYAVKASGDSMWPTIADGEIVVCDTKRPPSDNS-VVHYTFDGESG 151 Query: 182 AKVLISRRGRSIDLMSLNCCYP---VDTVEMSDI 212 K + + S+ L+ N + + Sbjct: 152 IKRVKRQSDGSVILLPDNTSCEGCTPIVIPKDRV 185 >gi|153818456|ref|ZP_01971123.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio cholerae NCTC 8457] gi|126511015|gb|EAZ73609.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio cholerae NCTC 8457] Length = 242 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 30/228 (13%) Query: 7 KKIWEAIDRMAERHN----LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I +R+ E L+ A+K+G+ R +PS + + I Sbjct: 21 ERIIRFKERLVEVIGDEAVLS---FAKKSGMSEGVMRSYIRGDT-----FPSLDRLEAIA 72 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--- 119 A + L + + E ++ ++ G V Sbjct: 73 NAAEVDLNWLATGKEATRQLVEAPVRKDNVVEVVQ-------YDFRASAGAGCLIVSENP 125 Query: 120 ---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKP 175 R T + SM P D++++ D + + Sbjct: 126 VAKFEFSREWLIKQGLNGKHLTVVEVYGDSMEPTLMDEDLMLVEVVDDPKQARDGVCVFR 185 Query: 176 RTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219 +++ K + + S N Y + + + R++ Sbjct: 186 IDDEVMVKRVQYDFASGGYHVTSDNTAYSPFFIGKEFEGRFQLLGRMV 233 >gi|325918520|ref|ZP_08180636.1| SOS-response transcriptional repressor, LexA [Xanthomonas vesicatoria ATCC 35937] gi|325535255|gb|EGD07135.1| SOS-response transcriptional repressor, LexA [Xanthomonas vesicatoria ATCC 35937] Length = 201 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 69/215 (32%), Gaps = 35/215 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT K+ + + + + ++PS +A+ G R + + + Sbjct: 1 MTPLPPKRAAVLAFLQQ-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++L G +P+L +G P G Sbjct: 53 GLIELLPN-------QKRGIRVPGGAGRDALLALPVLGRVAAG---------VPIGA--- 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +G+ +++++ K Q SM+ GD++ ++ + + G ++ + Sbjct: 94 DIGLERQLWLDRTLFSLRPD-YLLKVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L I L+ N + V Sbjct: 153 D-GEITIKRLER-GPERIRLLPRNRAHAPIVVAAD 185 >gi|242240801|ref|YP_002988982.1| LexA repressor [Dickeya dadantii Ech703] gi|242132858|gb|ACS87160.1| SOS-response transcriptional repressor, LexA [Dickeya dadantii Ech703] Length = 203 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 37/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A + G R P+ Sbjct: 1 MKALTTRQQQVYDLIRDHISQTGMPPTRAEIASQLGF-----------------RSPNAA 43 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + L G + G G G Sbjct: 44 E-------------EHLKALARKGVIEIVTGASRGIRLLMEEEDQGLPLIGRVAAGEPLL 90 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 91 AQQHIECHYQVDPAMFKPNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L++ N + V++ + Sbjct: 151 -EDEVTVKRLKKQ-GNIVQLLAENKDFEPIVVDLRE 184 >gi|332678658|gb|AEE87787.1| prophage repressor protein [Francisella cf. novicida Fx1] Length = 217 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHLEVMRILGLKDNYC 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 +L + +G + P + + +P+ Sbjct: 63 PSDTSIITVANVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SM P +G+ ++++ D++++ Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVI 209 >gi|218890078|ref|YP_002438942.1| hypothetical protein PLES_13381 [Pseudomonas aeruginosa LESB58] gi|218770301|emb|CAW26066.1| hypothetical protein PLES_13381 [Pseudomonas aeruginosa LESB58] Length = 251 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 60/248 (24%), Gaps = 30/248 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + A+ +AE+ T A + +PT ++ I + Sbjct: 1 MIDITTIRRANAL-TLAEKEGGTV-AFAARIDREPTQVSRLIGSNPTKNIGNRLARHIEE 58 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE------------IPLLYFPPSGSGGFFDSGV 108 + E P +FD Sbjct: 59 KFNMPRGWLDIQHTPEQQLRVAEPTAEYHSGGNLEPLSPWSDGDPLAPDEVEIPYFDEVE 118 Query: 109 FPTGNKWN--------TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 G + P+ + ++ SM PL G I+ ++ Sbjct: 119 VAAGGGRVPDLELAKRKIRFPKATLREAAV--DKSTSVCVNVTGNSMEPLIADGAIIGVD 176 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEW 214 ++ + + K + G I L S N YP + I Sbjct: 177 LSVNTIVDGEIYALKHDDLLRVKFVYRLPGGGIRLRSYNRDEYPDEEYTRDQMRAGGISV 236 Query: 215 IARILWAS 222 I + W S Sbjct: 237 IGWVFWWS 244 >gi|168705638|ref|ZP_02737915.1| LexA repressor [Gemmata obscuriglobus UQM 2246] Length = 243 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 58/217 (26%), Gaps = 31/217 (14%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I+ I + E P+ + + G+ ++ Sbjct: 44 KQQSIYNYIRKHIEEKGFPPAIRDICTEFGISSP----------------------NGVM 81 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + G ++K + + SG GV G + + Sbjct: 82 CHLKALQTKGYINRVQKGENSQKAQARGITIPGVTSGGFSLPFVGVVAAGKAIESAE--D 139 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + K + TSM GD +++ A G++++ + Sbjct: 140 DQRLEMRELFGSEDLFVVKVRGTSMIEGHIADGDFVVIRKAETCENGEKVVAMIEKA-MT 198 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEWIA 216 K ++ I L +N V+ DI + Sbjct: 199 LKKYYKKKNE-IQLHPMNSTMEPIIVDPSREDIRILG 234 >gi|26989752|ref|NP_745177.1| transcriptional repressor pyocin R2_PP [Pseudomonas putida KT2440] gi|24984646|gb|AAN68641.1|AE016494_1 pyocin R2_PP, transcriptional repressor, CI/C2 family [Pseudomonas putida KT2440] Length = 243 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 25/208 (12%) Query: 29 RKAGLDPTS--FNKSKRFGIEG--------------RNRWPSTESIFKILAATNETICQL 72 + G+ T+ +K R W + K N + QL Sbjct: 38 KMVGVHKTTQAISKWLNGEAIAEADSMAALCAWLNVRREWLEYGVLPK-AQEPNSKVHQL 96 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 S+ ++ ++PL+ + +G+ S P + + P S Sbjct: 97 QVGDQSNVSGILERFGKVPLISWVQAGAWCEAISNFEP-YQADSWLSCPVPISDSGYALK 155 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGR 191 + + S Y G I+ ++ ++ N GDR++ + PRT ++ KVL+S GR Sbjct: 156 VLGDSMTNPGPGRS----YPTGCIIFVDPEVEANTGDRVIARVPRTNEVTFKVLVSDAGR 211 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L +N YP+ + + +++ Sbjct: 212 QF-LRPINPQYPIIDIT-EETHICGKVV 237 >gi|296100669|ref|YP_003610815.1| LexA repressor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055128|gb|ADF59866.1| LexA repressor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 202 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVFDLIRDHIGQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLVEEETGIPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPGMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++ L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNTVQLLPENNEFSPIVVDLRE 183 >gi|298244997|ref|ZP_06968803.1| transcriptional repressor, LexA family [Ktedonobacter racemifer DSM 44963] gi|297552478|gb|EFH86343.1| transcriptional repressor, LexA family [Ktedonobacter racemifer DSM 44963] Length = 217 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 51/192 (26%), Gaps = 12/192 (6%) Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 N KR G+ NR E I + + + S KK + I L+ Sbjct: 18 VNYMKREGMPPTNREIGRE--LGIASTGHVDYHLTMLEKKSLIIRQPKKSRGIKLVKQDE 75 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDI 156 S G G G + R + + SM GD Sbjct: 76 SVPAGIPLVGTIAAGEPLDIYADGSQRIDMGRDFIDSENCYALIVKGRSMIEDHICDGDY 135 Query: 157 LILNSAIQVNCGDRLLIKPRTGD----IVAKV-LISRRGRSIDLMSLNCCYPVDTVEMS- 210 +++ GD ++ + K + + L N + S Sbjct: 136 VVIQPQHICQNGDIVVAVHKFEGESGSATLKRFFQEKDHDRVRLQPANSELDPILIPKSI 195 Query: 211 ---DIEWIARIL 219 + E +++ Sbjct: 196 WDREWEIQGKVV 207 >gi|270262434|ref|ZP_06190705.1| protein UmuD [Serratia odorifera 4Rx13] gi|270043118|gb|EFA16211.1| protein UmuD [Serratia odorifera 4Rx13] Length = 140 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 14/144 (9%) Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 +E + L F + GF + V + Sbjct: 1 MMFISPSEDNKTTPALPLFADPVACGFPSPAQ-------DYVE--ARLDIGKLLVRHPNA 51 Query: 137 DTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 + SM + GD+LI++S+++ G+ ++ G+ K L + L Sbjct: 52 TYFVRASGDSMVEGNIKDGDLLIVDSSLRAEHGNIVIAAID-GEFTVKKLQRHPD--LRL 108 Query: 196 MSLNCCYPVDTVEMSD-IEWIARI 218 + +N Y D +E + Sbjct: 109 LPMNPAYAPIVFGDEDALEIFGVV 132 >gi|6491870|gb|AAF14052.1|AF039836_1 MucA [IncT plasmid R394] Length = 145 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 11/122 (9%) Query: 101 GGFFDSGVFPTGN-KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 G FP+ W + + H + + SM GD+L+ Sbjct: 19 FGELVPAGFPSPAAGWEEAEL----NLHTLVVTHPASTYFLRVTGDSMQDARIHSGDVLV 74 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216 ++ + G ++ + K LI R LM +N YP + D+E Sbjct: 75 VDRSETPEQGSIVVASID-NEFTVKKLILRP--RPCLMPMNPAYPPIYFDPESNDVEIWG 131 Query: 217 RI 218 + Sbjct: 132 VV 133 >gi|92112828|ref|YP_572756.1| putative prophage repressor [Chromohalobacter salexigens DSM 3043] gi|91795918|gb|ABE58057.1| putative prophage repressor [Chromohalobacter salexigens DSM 3043] Length = 157 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H ++ + + SM+ GDI+I+ G+ ++ ++ K L Sbjct: 55 HVPSRMVRRNTYALRVRGDSMIDCNIFDGDIIIIERFESAENGETAVVLINNQEVTLKKL 114 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + L N P ++ D++ + ++ Sbjct: 115 FIEKSG-VRLQPANDDMPPIYLKNDDVQVLGLVM 147 >gi|322507694|gb|ADX03148.1| Putative repressor protein from bacteriophage [Acinetobacter baumannii 1656-2] Length = 243 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 65/216 (30%), Gaps = 31/216 (14%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 LAR G+ P S + G+++ E++ + N L +T Sbjct: 13 ELARAVGVKPPSVSDWL----SGKSKTMEGENLLRASKFLNVNPSWLASGTGEIQSSTRD 68 Query: 86 KEKEIPLLYFPPSGSGGFFDSG-----------------VFPT---------GNKWNTVG 119 K K++ + F + D P G + Sbjct: 69 KFKQLDIEAFKKKYNISDSDEALLFSTIIEKPFTPSSKRWVPVKAYSKMGMDGYFTDMGY 128 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + K SM P R G ++ + + + + + + G Sbjct: 129 EGNAGDGYVPTHSAGPRAYGIKGTGDSMFPAIRNGWYVVCDPDADLVPNEFVQVCLKDGR 188 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 K + G + L+S+N EM ++E I Sbjct: 189 CTIKEFVGINGGVLSLLSVNGG-ERFFFEMDEVESI 223 >gi|161503561|ref|YP_001570673.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864908|gb|ABX21531.1| hypothetical protein SARI_01639 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 139 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 7/129 (5%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + + L + FP+ + V + + + + K Sbjct: 1 MEFFRPTELPGIISLPFFSYLVPCGFPSPAA-DYVE--QRIDLNELLVSHPGSTYFVKAT 57 Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM GD+L+++S+ GD ++ G+ K L R ++ L +N Y Sbjct: 58 GDSMIEAGISDGDLLVVDSSRTAEHGDIVIAA-VGGEFTVKRLQLRP--TVQLNPMNSAY 114 Query: 203 PVDTVEMSD 211 + D Sbjct: 115 SPIIIGSED 123 >gi|307243939|ref|ZP_07526064.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306492761|gb|EFM64789.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 227 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 64/220 (29%), Gaps = 17/220 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +++ L++ + ++ + + + + IL E + Sbjct: 8 NRLKAAMKNKSISQYSLSKISCINRGTISSYMSGKYLPKQDKIFI--LADILEVNPEWLA 65 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 D T+ + L+ P G + + + + I G Sbjct: 66 CNSDSMDRIDLNTQSTFDDGLLINSYPFVDAGVSAGLANEIEAQQD-IDLVNIPDLLLGR 124 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLIS 187 YA + + SM + G ++ L + + + GD ++ + K Sbjct: 125 YAGRKDLLLMRVNGESMNRVIPNGSLIGLITNVSPSSLSNGDIVV-FSNNYEYSVKRFFK 183 Query: 188 -RRGRSIDLMSLNCCYP----VDTVEMSD---IEWIARIL 219 ++ + Y + + + I +++ Sbjct: 184 DKKNKRYIFSPD--SYETCFDDIIIPFDNSDGLNIIGKVI 221 >gi|260463034|ref|ZP_05811237.1| putative phage repressor [Mesorhizobium opportunistum WSM2075] gi|259031155|gb|EEW32428.1| putative phage repressor [Mesorhizobium opportunistum WSM2075] Length = 234 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 60/223 (26%), Gaps = 19/223 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ AI + ++ L +A D + + P TE++ K A Sbjct: 12 KVGAAIRQARKQRGLVMRHIAEHNDTDVAAVGNWETGRN-----LPKTENLLKTAAFLRV 66 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE----- 122 L + ++ G D + + Sbjct: 67 DPVALGQGQVVFLDDAG-PVADAEIVTDAGPLPAGPMDIELLGAAVGGDDGDFTFNGEVA 125 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--- 179 A + SM+P Y G++L GD ++I+ + Sbjct: 126 GYVQRPPGIAHLRKVFALHVLSDSMVPRYEPGEMLYCG-GRDAVPGDHVVIETFPEENER 184 Query: 180 ---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ R + + N T I+ + R++ Sbjct: 185 NGKAFIKKLVKRTAGELVVEQYNP-PKTLTFNRYAIKHVWRVI 226 >gi|183600458|ref|ZP_02961951.1| hypothetical protein PROSTU_04034 [Providencia stuartii ATCC 25827] gi|188019942|gb|EDU57982.1| hypothetical protein PROSTU_04034 [Providencia stuartii ATCC 25827] Length = 207 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 64/217 (29%), Gaps = 35/217 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + +++++ + + + P + +A G R P+ Sbjct: 1 MKALTARQQQVYDLVRDHISQTGMPPTRAEIAASLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA + + + L G G G Sbjct: 44 EEHLKALARKGVIEI----------VSGASRGIRLLLEEENDPEIQGLPLIGRVAAGEPL 93 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + D + SM + GD+L ++ V G ++ + Sbjct: 94 LAQEHIESHYQVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 153 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K ++G ++L++ N + V++ Sbjct: 154 I-EDEVTVKRF-KQQGNRVELIAENPEFAPIIVDLRQ 188 >gi|303328406|ref|ZP_07358843.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3] gi|302861400|gb|EFL84337.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3] Length = 211 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 73/229 (31%), Gaps = 30/229 (13%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S+ + + + + ER + L R A DP + KSK + G P +++ + L Sbjct: 1 MESYDILKKQVGELLERMGGNKADLMRLATADPEN-EKSKFYKFLGGQSIPQGDALVEWL 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 TI T EK P + + +G E Sbjct: 60 VRMGFTI-------------TPPDEKLQGYAMIPKVRAIAGAGESLVTSGKVTGQYAFRE 106 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGD 179 I+ + SM PL R+GD ++++ ++ G + + Sbjct: 107 SFLEREHIH--PEKCVLMCVAGDSMEPLIREGDTILVDESEKGKELRDG-YIFVVGLNDA 163 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---------IEWIARIL 219 ++ K L L S N P V+ D + W R++ Sbjct: 164 LMVKRLAKIPNG-WRLCSENKERPDIDVQGDDFNTFRVYGRVRWFGRVV 211 >gi|270614132|ref|ZP_06221718.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] gi|270318000|gb|EFA29286.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] Length = 183 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 41/125 (32%), Gaps = 2/125 (1%) Query: 100 SGGFFDSGVFPTGNKWNT-VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 F+ N + + + ++ SM P+ G + Sbjct: 56 GWIAFEGMDANVKNGFEHKIKLRFSKATLRKQGVQYENAVCVIADGNSMEPVIPDGTTVG 115 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIAR 217 ++ + ++ G + K+L + + + S N +P + E+ DI + + Sbjct: 116 IDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNTEEHPDEIAELQDISVLGK 175 Query: 218 ILWAS 222 + W S Sbjct: 176 VFWYS 180 >gi|148548161|ref|YP_001268263.1| putative prophage repressor [Pseudomonas putida F1] gi|148512219|gb|ABQ79079.1| putative prophage repressor [Pseudomonas putida F1] Length = 158 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 4/117 (3%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165 P G E + ++ ++ K + SM GDI+I++ + Sbjct: 38 HVPAGFPSPAADHLESHISLDELFDLRAPHVYLVKVEGDSMQGAGIYSGDIVIVDRGREA 97 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 GD ++ + + V K L R + L S N YP + D + ++ S Sbjct: 98 EHGDIVIAAVNS-EPVCKRLHRR-DGVVILKSENTAYPPRYIMEGDDLVVWGVVRYS 152 >gi|253682017|ref|ZP_04862814.1| repressor LexA [Clostridium botulinum D str. 1873] gi|253561729|gb|EES91181.1| repressor LexA [Clostridium botulinum D str. 1873] Length = 202 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 39/225 (17%) Query: 1 MTSFSHK---KIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWP 53 M+ S +I+E I + PS + + GL TS + + +G R Sbjct: 1 MSRSSEDKQMEIYEFIKTQIVQKGYPPSVREICKGVGLSSTSSVHSHLSKLEKKGLIRRD 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 ST+ K+ + P + N Sbjct: 61 STK---------------------PRTIEILKEPMIRKEMVNIPIVGKVTAGMPILAVEN 99 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 +T + P N K SM+ GD I+ + G+ ++ Sbjct: 100 IEDTFPISLNFIPKN------KDLFILKVSGESMIDAGILDGDFAIIEKVDYASDGEIVV 153 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + K + I L N V+ D + + + Sbjct: 154 ALID-NEATLKRFFKEKD-HIRLQPENQTMESIIVK--DCKILGK 194 >gi|25011270|ref|NP_735665.1| hypothetical protein gbs1221 [Streptococcus agalactiae NEM316] gi|23095694|emb|CAD46880.1| Unknown [Streptococcus agalactiae NEM316] Length = 262 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 27/255 (10%), Positives = 65/255 (25%), Gaps = 45/255 (17%) Query: 3 SFSHKKI------WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 + ++I ++ + + L++ G+ P++ + P Sbjct: 7 KLTPQEIEALRFFSSKLNDLLNETSTKQVELSKATGIPPSTLTGYVKGTS-----LPIPG 61 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTE-------------------KKEKEIPLLYFPP 97 ++ KI + + E ++ +L + Sbjct: 62 NVQKIADYFGLMKSDIDPRFAPRKKKHELKIPTSPLVNKITKTVVELNVPRKQQVLDYAT 121 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDT 145 + + ++ + Y D Sbjct: 122 EQLKEQKNKITSIEETLYEYKVYEKLSAGTGYGYFGDGNYDTVFYDEQLDYDFASWVFGD 181 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 SM P Y G++ ++ G + G K + +G + L+SLN Y Sbjct: 182 SMEPTYLNGEVALIKQTGFDYDG-AIYAVEWDGQTYIKKVFREKGG-LRLVSLNKKYKDK 239 Query: 206 TVE-MSDIEWIARIL 219 D I +++ Sbjct: 240 FAPFSEDPRIIGKVV 254 >gi|307151336|ref|YP_003886720.1| transcriptional repressor, LexA family [Cyanothece sp. PCC 7822] gi|306981564|gb|ADN13445.1| transcriptional repressor, LexA family [Cyanothece sp. PCC 7822] Length = 202 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 51/190 (26%), Gaps = 8/190 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I PS + K + + Q + E + + Sbjct: 8 QQELYDWLCEYIRTSQHAPSIRQMMKAMNLRSPAPIQSRLERLRSKGYIDWTEGKARTIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSM-LPLYR 152 + G G G +++ + + + + SM L Sbjct: 68 ILHQPAVGIPIHGSIAAGGLVE--PFTDVQEKLDLTSFFQKPHWFALRVTGDSMIEDLIT 125 Query: 153 KGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 +GD++I+ + G+ + + K + G + L N Y + + Sbjct: 126 EGDLVIMRPRNPDENLKNGEIVAARVDGHGTTLKRYY-QEGEKVTLKPSNPKYNPIIIPL 184 Query: 210 SDIEWIARIL 219 +E ++ Sbjct: 185 HQVEIQGILV 194 >gi|239993697|ref|ZP_04714221.1| LexA repressor [Alteromonas macleodii ATCC 27126] Length = 208 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 32/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ E I + P + +AR+ G R+ + E Sbjct: 1 MRPLTARQTEVLELIKTTMLETGMPPTRAEIARQLGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + T + K L G G G Sbjct: 46 HLKALARK----------GVIEILPGTSRGIKLNIPLDNDAQEEEGLPLIGRVAAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V+ G ++ + Sbjct: 96 AQEHVESHYKVDPALFQPHADFLLRVNGMSMKDIGILDGDLLAVHRTTDVHNGQVVVARV 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L R GR + L + N + V+++ Sbjct: 156 D-EDVTVKRLEKR-GREVLLHAENDEFAPIKVDLA 188 >gi|78358014|ref|YP_389463.1| SOS mutagenesis protein UmuD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220419|gb|ABB39768.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 208 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 8/171 (4%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 P+ ++ + + + G Sbjct: 35 PAAHALRPSRTRDAVPAHAHTGGADGLHMLAGAVPQHEGAEKIRHAAADRPLMLSCVAAG 94 Query: 113 ---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168 + + + + + SM GDIL+++ A+Q G Sbjct: 95 FPSPADDYID--RRLDLNEYLVRNPESTFYVRVHGESMRDAGIWAGDILVVDRAVQPATG 152 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 R++I G++ K L + G + L+ N Y V + + ++ Sbjct: 153 -RVVIAVLDGELTVKRL-KKEGDRLLLVPENPDYSPVDVSGREDFSVWGVV 201 >gi|88803785|ref|ZP_01119308.1| transcription regulator [Polaribacter irgensii 23-P] gi|88780313|gb|EAR11495.1| transcription regulator [Polaribacter irgensii 23-P] Length = 257 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 59/218 (27%), Gaps = 8/218 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + LT LA + + + + + + S + + Sbjct: 2 NNLSKNIKHLRTLKKLTQESLAEELSVTRSRISSYEENRSSPTIDFLIDFSAYFRIPIDI 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEIR 124 L K P+ + + G ++ E Sbjct: 62 IIKNDLSKAKDVSFIDVGNKRVLFPIAVDQDNENLIEVIPAKASAGYLLGYDDPEYIEQL 121 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIV 181 + + + + SMLP+ + G ++ + G ++ + + Sbjct: 122 EKIKLPFLPKGKHRAFPIKGDSMLPM-KDGSYVVAEFVEDIKAAKSGCSYIVVTKDDGMT 180 Query: 182 AKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 K L +S L N Y V + ++ + + Sbjct: 181 YKRLENQVEEKQSFLLKPDNTSYQSYEVPVVEVLELWK 218 >gi|78485578|ref|YP_391503.1| putative prophage repressor [Thiomicrospira crunogena XCL-2] gi|78363864|gb|ABB41829.1| S24 family peptidase [Thiomicrospira crunogena XCL-2] Length = 153 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 2/88 (2%) Query: 132 AIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 ++ + + + +SM GDI+I+ G+ ++++ ++ K + Sbjct: 60 MVRKETFALRVKGSSMIEENIEDGDIVIIERRSTAENGESVVVRINNEEVTMKKFYIEKN 119 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 I L N + +IE + + Sbjct: 120 G-IRLQPANADMEPIYITNENIEILGIV 146 >gi|327490807|gb|EGF22588.1| hypothetical transcriptional regulator [Streptococcus sanguinis SK1058] Length = 231 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 20/217 (9%), Positives = 53/217 (24%), Gaps = 14/217 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + L + K + +++ ++ + + + + + IL +L Sbjct: 11 LKNRRLKLGLRQVDIIEKLNVSKQAYSAWEKG--KIKPSQDNLKKLETILKVPEGYFTEL 68 Query: 73 LDLPFSDGRTTEKKEKEIPLL---------YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++K + + ++ Sbjct: 69 EIATLYKKLNKPNQQKAKIYVEDLLETQKSKVQSIKKERYEYHVYEKMSAGIGASIYGDV 128 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D SM P Y+ G + ++ G + K Sbjct: 129 NYDTVYFDEEFAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNSQTYIK 187 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + + L+S+N Y + D + I+ Sbjct: 188 RVFREEDG-LRLVSINQKYKDIFIPYEDDPRVVGVIV 223 >gi|296106561|ref|YP_003618261.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Legionella pneumophila 2300/99 Alcoy] gi|295648462|gb|ADG24309.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Legionella pneumophila 2300/99 Alcoy] Length = 168 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + SM+ GD L+++ +I+ + G ++ Sbjct: 58 ADDYIE--GYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLVDRSIEPSDGRIVI 115 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + G + L+ N + + I ++ Sbjct: 116 AAVN-GELTVKRLSKK-GGRVQLLPANPKFQPIDITEGSEMVIWGVV 160 >gi|319408671|emb|CBI82326.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 206 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 35/216 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ NLT +A++ + S +K + + R + ++I + Sbjct: 6 NIINTLKKILTEFNLTQEDVAKRLNVTQASVSKWLK---DSDPRGSNRDAILALYRELTG 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +PL+ + +G+ P V +P Sbjct: 63 ESHLTTF---------------VPLMGYIGAGTEIDPSFEQIPEE-GLAQVEIP------ 100 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAK 183 +A + + SM P Y+ GD++I+ I+ G +I K Sbjct: 101 ---FAFPDDMIAFEVRGDSMYPAYKDGDMVIVRRRQIKTIESFIGKEAVILTHDNKRYIK 157 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + IDL+S N P ++ + W+ I Sbjct: 158 QISRGMNGEIDLISWNNVSP---IKNVKVTWVGEIF 190 >gi|315187286|gb|EFU21042.1| transcriptional repressor, LexA family [Spirochaeta thermophila DSM 6578] Length = 201 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 56/217 (25%), Gaps = 34/217 (15%) Query: 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K++ I R E H + +AR ++ + E Sbjct: 9 QKEVLSFIQRFRELHGYVPSYREIARHFSVNVRAIYDVLNALKEK--------------- 53 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + L + + V VPE Sbjct: 54 --GYIRHSPHKSRALEIVEEDPPPVVYLPLVGEVAAGKPL-----LAEEHIEGEVVVPES 106 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P G + + + SM KGD+ I+ G+ ++ Sbjct: 107 FLPRGG-----GRFFVLRVKGESMEGAGILKGDLAIIREQDWAVDGEIVVALLEEN-ATL 160 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + I L S + YP + ++ + +++ Sbjct: 161 KRFFKEK-HRIRLESSHPSYPPIY--TTQVKILGKLV 194 >gi|295095411|emb|CBK84501.1| SOS-response transcriptional repressor, LexA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 202 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVFDLIRDHIGQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLVEEESGIPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPGMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++ L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNTVQLLPENNEFSPIVVDLRE 183 >gi|322421350|ref|YP_004200573.1| LexA family transcriptional repressor [Geobacter sp. M18] gi|320127737|gb|ADW15297.1| transcriptional repressor, LexA family [Geobacter sp. M18] Length = 211 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 30/214 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT KK+ + I ER + +A+ G ES+ Sbjct: 1 MTP-KQKKVLDFILGFIERQGFQPSQQEIAQGCGF----------------------ESL 37 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + ++ + + + + S + G+ G Sbjct: 38 GTVQHYLRVLERGGHLSRNNNAKRGLQLSQRKVVAPAATSPAFELPLVGIVAAGRPVEAF 97 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + A + + SM+ + GD + ++ G ++ Sbjct: 98 QLSDAI-EVPSAMAGPGNVVY-EVRGDSMVEMGIMDGDFVAVHPQSVAENGQTVI-AEVN 154 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G I K + + I L+ N TV D Sbjct: 155 GSITIKKYVRKENG-IQLLPANSAMSPITVTEDD 187 >gi|298501785|ref|YP_003723725.1| bifunctional S24 family peptidase/transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|298237380|gb|ADI68511.1| bifunctional S24 family peptidase/transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] Length = 246 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 63/247 (25%), Gaps = 38/247 (15%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +K+I I R+ L P LA T+ N + R E + Sbjct: 2 SLGNKQIMADNIKRLLSAKGLNPRQLAIALDFKYTTVNDWVN--AKTYPRIDKIEMLANF 59 Query: 62 LAATNETICQL-----------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + + + + + K + + Sbjct: 60 FNVSKSDLVENKNAETPTTSLIQSIYDQLTPPRQAKALTYLKKQLLEQKNENIVSENIIS 119 Query: 111 TGNKWNTVGVPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRK 153 + + +P I I SM P + Sbjct: 120 LDDYRESKTLPVIGVVTAGNGITQDDNLNIEKCFYTDEIPDDYDAIAYVVGNSMEPKIKN 179 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DI 212 GD L + + QV+ + + G K L + L SLN ++ S DI Sbjct: 180 GDYLFIKNTPQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDCADIQLDESNDI 233 Query: 213 EWIARIL 219 I ++ Sbjct: 234 RTIGEVV 240 >gi|289673956|ref|ZP_06494846.1| LexA repressor [Pseudomonas syringae pv. syringae FF5] Length = 99 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 137 DTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 D + Q SM GD++ ++ Q + G ++ + G++ K L R + I L Sbjct: 11 DYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARLD-GEVTIKRLQRRADQ-IRL 68 Query: 196 MSLNCCYPVDTVEMSD 211 + N Y V Sbjct: 69 LPRNPAYEPIIVTPDQ 84 >gi|293372213|ref|ZP_06618600.1| peptidase S24-like protein [Bacteroides ovatus SD CMC 3f] gi|292632839|gb|EFF51430.1| peptidase S24-like protein [Bacteroides ovatus SD CMC 3f] Length = 223 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 61/214 (28%), Gaps = 19/214 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + ++ L +AGL + G+ + S + KI + Sbjct: 3 IKEKIQKYIDYKGISVYRLEAEAGLSKGYW---------GKTKSISADIAMKISRVYGDM 53 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-----KWNTVGVPEI 123 + L + ++E++ + + ++ + E Sbjct: 54 STEWLLRDKGEMIKNAEREQKTIEISESAISETKRKGALIYDIDATCGLSGRDIEFTDEK 113 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNCGDRLLIKPRTGDIV 181 I SMLPL GD +++ + ++ + + Sbjct: 114 VIGSIDAPEINPDSKIIFATGDSMLPLIASGDRVVIRKIESWDYFNYGQVYLIITNEYRL 173 Query: 182 AKVLISRR---GRSIDLMSLNCCYPVDTVEMSDI 212 K + I L S N Y + +I Sbjct: 174 IKRVRRHPKDADNLILLRSENPDYDDIDLPKREI 207 >gi|163787227|ref|ZP_02181674.1| putative UmuD/RumA DNA repair protein [Flavobacteriales bacterium ALC-1] gi|159877115|gb|EDP71172.1| putative UmuD/RumA DNA repair protein [Flavobacteriales bacterium ALC-1] Length = 146 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 4/118 (3%) Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPL-YRKGDILILNS 161 F G E R + + + SM+ D+L+++ Sbjct: 24 FFDTGISAGFPSPADDFKEQRLSLDDELVKNKEATFYARVSGQSMIGAGLDDNDLLVIDR 83 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +++ + G+ K L + L N YP+ + + + I+ Sbjct: 84 SLEPENNKIAVCFLD-GEFTVKRL-RVSEGEVWLQPENPDYPIIKISEENSFVVWGIV 139 >gi|22124486|ref|NP_667909.1| LexA repressor [Yersinia pestis KIM 10] gi|45440324|ref|NP_991863.1| LexA repressor [Yersinia pestis biovar Microtus str. 91001] gi|51594724|ref|YP_068915.1| LexA repressor [Yersinia pseudotuberculosis IP 32953] gi|108809960|ref|YP_653876.1| LexA repressor [Yersinia pestis Antiqua] gi|108813515|ref|YP_649282.1| LexA repressor [Yersinia pestis Nepal516] gi|145600904|ref|YP_001164980.1| LexA repressor [Yersinia pestis Pestoides F] gi|150260639|ref|ZP_01917367.1| LexA repressor [Yersinia pestis CA88-4125] gi|153950737|ref|YP_001402724.1| LexA repressor [Yersinia pseudotuberculosis IP 31758] gi|162419551|ref|YP_001605833.1| LexA repressor [Yersinia pestis Angola] gi|165926677|ref|ZP_02222509.1| LexA repressor [Yersinia pestis biovar Orientalis str. F1991016] gi|165936375|ref|ZP_02224943.1| LexA repressor [Yersinia pestis biovar Orientalis str. IP275] gi|166010401|ref|ZP_02231299.1| LexA repressor [Yersinia pestis biovar Antiqua str. E1979001] gi|166213964|ref|ZP_02239999.1| LexA repressor [Yersinia pestis biovar Antiqua str. B42003004] gi|167402457|ref|ZP_02307914.1| LexA repressor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418922|ref|ZP_02310675.1| LexA repressor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426198|ref|ZP_02317951.1| LexA repressor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467145|ref|ZP_02331849.1| LexA repressor [Yersinia pestis FV-1] gi|170026073|ref|YP_001722578.1| LexA repressor [Yersinia pseudotuberculosis YPIII] gi|186893727|ref|YP_001870839.1| LexA repressor [Yersinia pseudotuberculosis PB1/+] gi|218927520|ref|YP_002345395.1| LexA repressor [Yersinia pestis CO92] gi|229836571|ref|ZP_04456737.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia pestis Pestoides A] gi|229840179|ref|ZP_04460338.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842261|ref|ZP_04462416.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia pestis biovar Orientalis str. India 195] gi|229904001|ref|ZP_04519114.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia pestis Nepal516] gi|270489014|ref|ZP_06206088.1| repressor LexA [Yersinia pestis KIM D27] gi|294502381|ref|YP_003566443.1| LexA repressor [Yersinia pestis Z176003] gi|25453097|sp|Q8ZJ16|LEXA_YERPE RecName: Full=LexA repressor gi|71658818|sp|Q66FG7|LEXA_YERPS RecName: Full=LexA repressor gi|123072492|sp|Q1C0U1|LEXA_YERPA RecName: Full=LexA repressor gi|123246202|sp|Q1CE98|LEXA_YERPN RecName: Full=LexA repressor gi|166224657|sp|A4TRU5|LEXA_YERPP RecName: Full=LexA repressor gi|166990804|sp|A7FN96|LEXA_YERP3 RecName: Full=LexA repressor gi|229470193|sp|B2K1U7|LEXA_YERPB RecName: Full=LexA repressor gi|229470194|sp|A9R273|LEXA_YERPG RecName: Full=LexA repressor gi|229470195|sp|B1JNE3|LEXA_YERPY RecName: Full=LexA repressor gi|21957278|gb|AAM84160.1|AE013659_4 regulator for SOS(lexA) regulon [Yersinia pestis KIM 10] gi|45435180|gb|AAS60740.1| LexA repressor [Yersinia pestis biovar Microtus str. 91001] gi|51588006|emb|CAH19610.1| LexA repressor [Yersinia pseudotuberculosis IP 32953] gi|108777163|gb|ABG19682.1| SOS-response transcriptional repressor, LexA [Yersinia pestis Nepal516] gi|108781873|gb|ABG15931.1| SOS-response transcriptional repressor, LexA [Yersinia pestis Antiqua] gi|115346131|emb|CAL18999.1| LexA repressor [Yersinia pestis CO92] gi|145212600|gb|ABP42007.1| SOS-response transcriptional repressor, LexA [Yersinia pestis Pestoides F] gi|149290047|gb|EDM40124.1| LexA repressor [Yersinia pestis CA88-4125] gi|152962232|gb|ABS49693.1| LexA repressor [Yersinia pseudotuberculosis IP 31758] gi|162352366|gb|ABX86314.1| LexA repressor [Yersinia pestis Angola] gi|165915491|gb|EDR34100.1| LexA repressor [Yersinia pestis biovar Orientalis str. IP275] gi|165921300|gb|EDR38524.1| LexA repressor [Yersinia pestis biovar Orientalis str. F1991016] gi|165990491|gb|EDR42792.1| LexA repressor [Yersinia pestis biovar Antiqua str. E1979001] gi|166204939|gb|EDR49419.1| LexA repressor [Yersinia pestis biovar Antiqua str. B42003004] gi|166962916|gb|EDR58937.1| LexA repressor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048145|gb|EDR59553.1| LexA repressor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054909|gb|EDR64711.1| LexA repressor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752607|gb|ACA70125.1| transcriptional repressor, LexA family [Yersinia pseudotuberculosis YPIII] gi|186696753|gb|ACC87382.1| transcriptional repressor, LexA family [Yersinia pseudotuberculosis PB1/+] gi|229679771|gb|EEO75874.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia pestis Nepal516] gi|229690571|gb|EEO82625.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia pestis biovar Orientalis str. India 195] gi|229696545|gb|EEO86592.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706255|gb|EEO92263.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia pestis Pestoides A] gi|262360464|gb|ACY57185.1| LexA repressor [Yersinia pestis D106004] gi|262364410|gb|ACY60967.1| LexA repressor [Yersinia pestis D182038] gi|270337518|gb|EFA48295.1| repressor LexA [Yersinia pestis KIM D27] gi|294352840|gb|ADE63181.1| LexA repressor [Yersinia pestis Z176003] Length = 202 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ + + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEEGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPSLFKPGADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNIVHLLPENSEFQPIVVDLRE 183 >gi|332995784|gb|AEF05839.1| LexA repressor [Alteromonas sp. SN2] Length = 208 Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 32/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ E I + P + +AR G R+ + E Sbjct: 1 MRPLTARQTEVLELIKTTMLETGMPPTRAEIARHLGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + T + K L G G G Sbjct: 46 HLKALARK----------GVIEILPGTSRGIKLNIPLEDETPEEEGLPLIGRVAAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V+ G ++ + Sbjct: 96 AQEHIESHYKVDPALFQPHADFLLRVSGMSMKDIGILDGDLLAVHRTTDVHNGQVVVARV 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L R GR + L + N + V+++ Sbjct: 156 D-EDVTVKRLEKR-GREVLLHAENDEFSPIKVDLA 188 >gi|251810407|ref|ZP_04824880.1| phage repressor protein [Staphylococcus epidermidis BCM-HMP0060] gi|251806011|gb|EES58668.1| phage repressor protein [Staphylococcus epidermidis BCM-HMP0060] Length = 240 Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 82/238 (34%), Gaps = 28/238 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARK------AGLDPTSFNKSKRFGIEGRNRWPST 55 + I ++ ++ LT L+ + A SF K K E P Sbjct: 12 KELKQMTFGDRIRKLRKQKGLTLQQLSDELHEQFPAKDKKNSFTKGKLSNWENDKSEPIA 71 Query: 56 ESIFKILAATNETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +++ ++ ++ L+ L T + ++P +G+ Sbjct: 72 KTVSQLATYFGVSMDYLIGLEDDIVPLETVHQYYQVPFYGKVSAGNFEMVADETK----- 126 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGD 169 VP+ ++ + SM + G +I++ ++N D Sbjct: 127 --EFDVPDKAFNGRK----PSECIALQVNGDSMNKILANGSYIIVHDYRKNQDYKLNSND 180 Query: 170 RLLIKPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEM---SDIEWIARILWASQ 223 L+++ G+ K + + +D +S + + ++ ++ +IE I ++++ Q Sbjct: 181 ILVLR-LGGEYTVKRVRRTETKLHLDPVSYSDEFKTNSYDLDSIDEIEVIGKVIYNYQ 237 >gi|21910513|ref|NP_664781.1| putative repressor protein - phage associated [Streptococcus pyogenes MGAS315] gi|28876261|ref|NP_795430.1| putative repressor protein [Streptococcus pyogenes phage 315.2] gi|21904712|gb|AAM79584.1| putative repressor protein - phage-associated [Streptococcus pyogenes phage 315.2] Length = 262 Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 67/245 (27%), Gaps = 39/245 (15%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I I+ + +NL LA + +SFN+ + P+ ++ KI Sbjct: 17 KIISAKINSLLLENNLKQGHLADALEIPRSSFNEYVKGNS-----LPNPGNVQKIADYFG 71 Query: 67 ETICQLLDLPFSDGRTTEKK-------------------EKEIPLLYFPPSGSGGFFDSG 107 + + E K ++ +L F + Sbjct: 72 LMKSDIDPRFAPRKKNHELKIPTSPLVKKITTTVVELKVPRKQKVLDFATEQLKEQKNKI 131 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGD 155 + ++ + Y D SM P Y G+ Sbjct: 132 TSIEKKLYEYKVYEKLSAGTGYGYFGDGNYDTVFYDEELDYDFASWVFGDSMEPTYLNGE 191 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EW 214 ++++ G G K + +G + L+SLN Y S+ Sbjct: 192 VVLIKQTGFDYEGGI-YAVEWDGQTYIKKVYREKGG-LRLVSLNKKYNDKFAPFSEGPRV 249 Query: 215 IARIL 219 I I+ Sbjct: 250 IGEIV 254 >gi|146743438|gb|ABQ43165.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Ca] Length = 350 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIHDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKGLEKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|146743442|gb|ABQ43168.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Cb] Length = 349 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIHDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 D-DEVTVKGLEKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|91210491|ref|YP_540477.1| putative prophage CP-933O repressor protein [Escherichia coli UTI89] gi|117623476|ref|YP_852389.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli APEC O1] gi|218558195|ref|YP_002391108.1| repressor protein from phage origin [Escherichia coli S88] gi|237705232|ref|ZP_04535713.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91072065|gb|ABE06946.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli UTI89] gi|115512600|gb|ABJ00675.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli APEC O1] gi|218364964|emb|CAR02661.1| putative repressor protein from phage origin [Escherichia coli S88] gi|226899989|gb|EEH86248.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294491136|gb|ADE89892.1| peptidase, S24 (LexA) family [Escherichia coli IHE3034] gi|307627215|gb|ADN71519.1| putative repressor protein from phage origin [Escherichia coli UM146] gi|315288641|gb|EFU48039.1| peptidase S24-like domain protein [Escherichia coli MS 110-3] Length = 212 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 62/208 (29%), Gaps = 21/208 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT- 65 + I E I + NL L G S ++ G +R+ S S+ KIL Sbjct: 4 QTISERITQRMHALNLKGKDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILKVNE 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 N + + K +PLL + S + + I S Sbjct: 62 NWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSSITS 108 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + I + SM G + ++ V G+ +L P+ Sbjct: 109 CVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKGTTT 168 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVE 208 + G I L+ N YP ++ Sbjct: 169 PVIRKLEIEGPDILLVPTNPRYPSIMLD 196 >gi|313891813|ref|ZP_07825418.1| repressor LexA [Dialister microaerophilus UPII 345-E] gi|313119807|gb|EFR42994.1| repressor LexA [Dialister microaerophilus UPII 345-E] Length = 224 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 57/230 (24%), Gaps = 29/230 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGL-------ARKAGL--DPTSFNKSKRF-GIEGRN 50 M S K E + + + A+K G+ + + ++ G++ Sbjct: 1 MKKRSTK---ERLKELMTARRYRQVDIIELCKPYAKKYGVKINKSDISQYVSGKVSPGQD 57 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + S + A ++ + K P ++ Sbjct: 58 KLFVLGSALNVDEAWLMGYDVPMERKTRTTEPLQAKNIIPIQKKKIPLLGTIAAGQPIYA 117 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 + + + + D K SM+ GDI+ + V G Sbjct: 118 EEHIEEYLPIDDDLHA----------DFALKVSGDSMINADINDGDIVFIKKQEIVENGQ 167 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIA 216 + K G + L + N Y + + I Sbjct: 168 IAAVLID-DSATLKRFYKI-GSIVQLQAENPKYSPIICDESNCDNCRIIG 215 >gi|298485973|ref|ZP_07004047.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159450|gb|EFI00497.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 238 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 15/208 (7%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT--- 83 ++ G+ + + G + S+ + L T + + P Sbjct: 27 ISNTCGVSYEAVRQWFAGDT-GNIKNEHLLSLARSLDTTVDWLLDGAGEPPQRRAAGNVA 85 Query: 84 ---EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI----YAIQTQ 136 + + + P G G TV +R+ + Y Sbjct: 86 QGDFTRHQRDDEIDIPQYDVVGSMGPGQVLPKEYIETVRNITVRTEYLREQGITYTHDKN 145 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM + GD LI++ I D + + G + K L + + ++ Sbjct: 146 LSVITGFGESMGATFASGDPLIVDQGINEVVVDGVYVFTLDGMLYIKRLQRLP-KMLRML 204 Query: 197 SLNCCYPVDTVEMSD---IEWIARILWA 221 S N +P ++ + I AR+L A Sbjct: 205 SDNETFPPYDIKGDELNSIVIHARVLLA 232 >gi|295135526|ref|YP_003586202.1| HTH_3 family transcriptional regulator protein [Zunongwangia profunda SM-A87] gi|294983541|gb|ADF54006.1| HTH_3 family transcriptional regulator protein [Zunongwangia profunda SM-A87] Length = 262 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 15/214 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + E +N T + A G+ ++ +R + S + + ++L L Sbjct: 12 KEVREENNFTQAEFAEILGIKNST-ADIERGRTK-----LSGKVVSELLRQFGINPLWLF 65 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 K + ++ + + + I Sbjct: 66 GDSGQKYLKISKGDVSPKVVTVDRNTDNENIVMVNQKAAAGYPHNVQDVEWYTQLPAFEI 125 Query: 134 Q------TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKVL 185 + + SMLP YR G+ ++ + ++ +R+ + ++ K + Sbjct: 126 PLPEFRNASYRGFQVEGDSMLPNYRPGEWVMAKGIAGMEEVNNNRVYVVVMYDSVLIKKI 185 Query: 186 ISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+SLN Y V++ DI+ + ++ Sbjct: 186 QRLPDPSKLLLISLNEEYLPIEVKLGDIQELWQV 219 >gi|303324865|pdb|3JSO|A Chain A, Classic Protein With A New Twist: Crystal Structure Of A Lexa Repressor Dna Complex gi|303324866|pdb|3JSO|B Chain B, Classic Protein With A New Twist: Crystal Structure Of A Lexa Repressor Dna Complex gi|303324869|pdb|3JSP|A Chain A, Classic Protein With A New Twist: Crystal Structure Of A Lexa Repressor Dna Complex gi|303324870|pdb|3JSP|B Chain B, Classic Protein With A New Twist: Crystal Structure Of A Lexa Repressor Dna Complex gi|303324897|pdb|3K3R|E Chain E, Unrefined Crystal Structure Of A Lexa-Dna Complex gi|303324898|pdb|3K3R|F Chain F, Unrefined Crystal Structure Of A Lexa-Dna Complex Length = 202 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ L + G ++L+ N + V++ Sbjct: 150 D-DEVTVARLKKQ-GNKVELLPENSEFKPIVVDLRQ 183 >gi|328952600|ref|YP_004369934.1| putative phage repressor [Desulfobacca acetoxidans DSM 11109] gi|328452924|gb|AEB08753.1| putative phage repressor [Desulfobacca acetoxidans DSM 11109] Length = 258 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 25/238 (10%) Query: 2 TSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 FS + + ++ + G+ + ++ K PS +S+ Sbjct: 4 KMFSKEIFLRQVKKLMAEKGIKDQKVFNDMVGV-QRAISRWKSGESR-----PSVDSLMV 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW----- 115 I ++I LL + + P Sbjct: 58 IQEIFGKSIDWLLTGEEPPAFRPVQPIISLAGTEPEVPEGLRPEYYLAVPMVEGRIAAGY 117 Query: 116 ------NTVGVPEIRSPHNGIYAIQTQDTRHKT--QDTSMLPLYRKGDILILNSAIQVNC 167 + V + SM P +G I+I++ Sbjct: 118 AGAIPGDYVEDLVWVYKPEIGARQHHNLRAVRLRHDSESMEPTIHRGSIVIIDPTEIQIT 177 Query: 168 GDRL--LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWA 221 + + G K + + L+S N Y +E + I I R++W+ Sbjct: 178 PKAIFAVRLDSEGGCALKRVQ-QTKDLWVLVSDNPEYDPIAIEKARIPTIIIGRVIWS 234 >gi|327473020|gb|EGF18447.1| hypothetical transcriptional regulator [Streptococcus sanguinis SK408] Length = 227 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/217 (9%), Positives = 53/217 (24%), Gaps = 14/217 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + L + K + +++ ++ + + + + + IL +L Sbjct: 7 LKNRRLKLGLRQVDIIEKLNVSKQAYSAWEKG--KIKPSQDNLKKLETILKVPEGYFTEL 64 Query: 73 LDLPFSDGRTTEKKEKEIPLL---------YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++K + + ++ Sbjct: 65 EIATLYKKLNKPNQQKAKIYVEDLLETQKSKVQSIKKERYEYHVYEKMSAGIGASIYGDV 124 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D SM P Y+ G + ++ G + K Sbjct: 125 NYDTVYFDEEFAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNSQTYIK 183 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 + + L+S+N Y + D + I+ Sbjct: 184 RVFREEDG-LRLVSINQKYKDIFIPYEDDPRVVGVIV 219 >gi|303246849|ref|ZP_07333126.1| putative phage repressor [Desulfovibrio fructosovorans JJ] gi|302491866|gb|EFL51746.1| putative phage repressor [Desulfovibrio fructosovorans JJ] Length = 274 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 71/251 (28%), Gaps = 43/251 (17%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNK-----------------------SKRFGI 46 W+A+ +A N +GLA G+ +K + Sbjct: 21 WKALVDLAAMENANQAGLAAFVGVSQGYVSKILSGKQMPKHGLRRRFAAFFELSYEEMLA 80 Query: 47 EGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE---KKEKEIPLLYFPPSGSGGF 103 GR R + + + + + + + GR +L + Sbjct: 81 LGRERLENQAYLPEGEGSRRYHVREPQYGGEATGRPASTGADNAALKSMLRDIRAREMHQ 140 Query: 104 FDSGVFP------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 P T T+ R+ T + SM P Sbjct: 141 VYYTEVPLREATGSMGGGSTETGDRTLTYLSFRTEWIRSKGNPEYMTVIRAFGDSMDPTI 200 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EM 209 G +++++ + +++ G + K L+ R + + S N P + + Sbjct: 201 TDGSVVLIDEGRRQFVKNKVYYLRYNGQMYIKRLVERE-GHLAIASDND--PNVLLVSDA 257 Query: 210 SDIEWIARILW 220 D E I R +W Sbjct: 258 DDFEIIGRCIW 268 >gi|253999192|ref|YP_003051255.1| peptidase S24 and S26 domain-containing protein [Methylovorus sp. SIP3-4] gi|253985871|gb|ACT50728.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4] Length = 153 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 3/99 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + SM+ +G L+++ +I+ ++ G++ Sbjct: 49 AELDLNKRLVRNPPATFFFTVSGDSMIGAGIFEGSTLVVDRSIKAKSTSIVV-AMVEGEL 107 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L R + L+S N Y T+ I ++ Sbjct: 108 MVKRLYKRGA-VVKLLSDNPAYAPITLTEGQELIIWGVV 145 >gi|260174776|ref|ZP_05761188.1| putative phage repressor [Bacteroides sp. D2] gi|315923030|ref|ZP_07919270.1| predicted protein [Bacteroides sp. D2] gi|313696905|gb|EFS33740.1| predicted protein [Bacteroides sp. D2] Length = 215 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 18/221 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + ++ E + + + +GL + ++ S SI KI Sbjct: 1 MTTKERFIEYLKI----KGIGQTSFEESSGLSRGAISQ---------KSGFSANSIEKIA 47 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGV 120 A + L + + G+ + Sbjct: 48 IACPDLNLDWLITGNGEILKSSHTNIIAKAPMEYGKEQTRPRVPLTAAAGSLSGDSIGVT 107 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNCGDRLLIKPRTG 178 E I+ I + D + SM P + GD + + ++ + T Sbjct: 108 LEQCEQMPLIHQIPSYDFTMFIKGDSMSPRFESGDEIACRHIDQSRFIQWGKVHVLDTTQ 167 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 V K + G I +S N Y +V DI ++ ++ Sbjct: 168 GFVIKRVYED-GDKIRCVSYNPEYSDFSVPKEDILSMSLVV 207 >gi|299771254|ref|YP_003733280.1| putative repressor protein from bacteriophage [Acinetobacter sp. DR1] gi|298701342|gb|ADI91907.1| putative repressor protein from bacteriophage [Acinetobacter sp. DR1] Length = 262 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 55/256 (21%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ H+ ++ + LT S A K + ++ + + E+ Sbjct: 1 MSELKTIHEIRLGNTRKLMKESGLTRSEFAEKIDMSYGLVSQY---IGKNPTKNIGDETA 57 Query: 59 FKILAATN---------------------------------------ETICQLLDLPFSD 79 KI A N + Sbjct: 58 LKIEEAFNKPRGYLDQSDIQNENAHQLDGTASFKQLDIEAFKKKYNIPDSEDAVLFSNVI 117 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139 + ++ +P+ + G G+F + V Sbjct: 118 EKPLVISKRWVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPTHTAGDR----------SYA 167 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 K SM P R G ++ + ++ + + + + G K I ++L+++N Sbjct: 168 IKGTGDSMYPAIRNGWYVVCDPDAELTPTEFVQVCLKDGRCTIKEFIGIHNNVLNLLAVN 227 Query: 200 CCYPVDTVEMSDIEWI 215 T +M ++E I Sbjct: 228 GG-ERLTFDMDEVESI 242 >gi|163800585|ref|ZP_02194486.1| putative phage repressor [Vibrio sp. AND4] gi|159176028|gb|EDP60822.1| putative phage repressor [Vibrio sp. AND4] Length = 220 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 52/205 (25%), Gaps = 11/205 (5%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRN---RWPSTESIFKILAATNETICQLLDLPFSD 79 LA+ G + +K R + + P+TE K+ + + D Sbjct: 11 NARALAKAIGGNAAFSDKIDRSTTQVSRFMGKRPTTEIGPKMARHIEQCFEKPEGWLDVD 70 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139 T + + G+ + + I Sbjct: 71 REKTPSSDISSVSYTTRTKQVPILSEVQAGTWGSVDTRAALDDDIEWQITSSNISDDAFA 130 Query: 140 HKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193 + SM P G I+++ + G ++ K L + Sbjct: 131 MRVTGNSMTNPHGSPSIPAGSIVVVEPCNCPDNGKIVVATLNDAPQATIKKLEIDGPQKF 190 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARI 218 L+ LN Y + + + + Sbjct: 191 -LVPLNPKYDPIPINGN-CRIVGYV 213 >gi|281357484|ref|ZP_06243972.1| Peptidase S24/S26A/S26B [Victivallis vadensis ATCC BAA-548] gi|281316087|gb|EFB00113.1| Peptidase S24/S26A/S26B [Victivallis vadensis ATCC BAA-548] Length = 312 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 16/224 (7%) Query: 8 KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESIFKILAA 64 ++ E I R + + + L R G S + +R G+ W ++ + L Sbjct: 87 ELRECIKDAMLREGVASAADLNRLIG--YDSVHTLERLLS-GKLNWFPDILSAVAEALGI 143 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV--PE 122 ++++ + + + P PE Sbjct: 144 DHDSLPISPAERMQLLPAGYFGDGAMLVRPIPVVSWANAAGHLDLLANPDTRLFSRWDPE 203 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRLLIKPRTG- 178 + + SM P DI+++ +V ++ + G Sbjct: 204 NTETVPAPVGTRKGTQAFRVTGISMEPTIMDDDIILVEQRMSLDEVPNNKIVVARLTEGK 263 Query: 179 ---DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +V K L + G L S N V VE SD++W+ ++ Sbjct: 264 FEDCVVCKRLRRQ-GGHCWLTSDNPAGMVIPVEPSDLQWLGIVV 306 >gi|289678686|ref|ZP_06499576.1| LexA repressor [Pseudomonas syringae pv. syringae FF5] Length = 107 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 3/92 (3%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E N + + + + SM + GD+L +++ + G ++ + + Sbjct: 3 IEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI-GDE 61 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 + K G + L++ N + V++ D Sbjct: 62 VTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 92 >gi|52841932|ref|YP_095731.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629043|gb|AAU27784.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 184 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM+ GDILI++ I+ G ++ Sbjct: 74 GDDYIE--SMLDLNEYLIKHPASTFFVRASGESMINAGIYSGDILIVDRGIEATHGKIVI 131 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G++ K L + G+ + L++ N +P + I ++ Sbjct: 132 VALN-GELTVKRLSRQHGQ-VKLLAENPDFPPIDITEEYDMVIWGVV 176 >gi|304443270|ref|YP_003857100.1| phage repressor protein [Staphylococcus phage SAP-26] gi|302749878|gb|ADL66963.1| phage repressor protein [Staphylococcus phage SAP-26] Length = 212 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 26/216 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + L+ +ARK + + + E P + KI + N + L Sbjct: 7 IKEIRLNNRLSKVEMARKLDVSEGTIRMWESGRTE-----PRMGMVEKISSLFNVSKGYL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L E E+P +G+ + VP Sbjct: 62 LGEIEEIVLPEFDSEIEVPYFGKVSAGNFEEVAIEN-------EKLKVPPFAFNGRK--- 111 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTGDIVAKVLIS 187 ++ K SM + G +I++ ++N D L+++ G+ K + Sbjct: 112 -PSECIALKINGDSMNKILANGSYIIVHDYRKSCDHKLNSNDILVLR-LGGEYTVKRVRR 169 Query: 188 RRGR-SIDLMSLNCCYPVDTVEM---SDIEWIARIL 219 + +D +S + + ++ ++ +IE I +++ Sbjct: 170 TETKLHLDPVSYSDEFKTNSYDLDSIDEIEVIGKVI 205 >gi|159903846|ref|YP_001551190.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9211] gi|159889022|gb|ABX09236.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9211] Length = 202 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 8/125 (6%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 G G G T + N + + SM+ GD++++ Sbjct: 77 GVPVLGAVAAGGLVETFDDVQETLDLNTVLQTKG-IFALTVNGDSMIDSYIADGDMVLME 135 Query: 161 SAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G + K + + L + N Y ++ ++ + Sbjct: 136 PVNDPSALRNGTVVSAMVPGSGTTLKHFFRKGP-LVRLEAANPAYEPIEIDADQVQIQGK 194 Query: 218 I--LW 220 + +W Sbjct: 195 LLAVW 199 >gi|304398841|ref|ZP_07380711.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304353545|gb|EFM17922.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 210 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 70/219 (31%), Gaps = 20/219 (9%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + + I + LT LA++ + + ++ ++ P E++ ++ Sbjct: 1 MKNETLGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEET-----LPRGENLLRLAE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + L P + + + Sbjct: 56 ALGCAP----AFLIDGDGPVFSESAYGGLHQIPLLNQRDVTRWLTDDSSVRHELL----- 106 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + A+ Q + ++ +M+P + D++I++ + GD +L + ++ Sbjct: 107 ---MHNDMALSQQSFAFRVEEQAMMPAIVRDDVVIIDPQVSPQPGDSVLALQQQIALIRT 163 Query: 184 VLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219 + +L +N +P +++ I ++ Sbjct: 164 WRQRSSEGGVTQFELAPININFPELHSSRENLKLIGTVV 202 >gi|33866116|ref|NP_897675.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. WH 8102] gi|33639091|emb|CAE08097.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. WH 8102] Length = 234 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 50/198 (25%), Gaps = 21/198 (10%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEK 85 LA G S + ++ R P+ +S + L Q Sbjct: 47 LAEYIGTHRHSPS-IRQMMQAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQLLGDMA 105 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 IP+L +G + + + + Sbjct: 106 AAAGIPVLGAVAAGGLVTAFD------DVQEHLDLAPVLETRG--------LFALTVNGD 151 Query: 146 SMLPL-YRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM+ GD++++ G + K + ++ L + N Sbjct: 152 SMVDAHIADGDVVLMEPVPDPQRLRNGTVVSALVAGSGTTLKHFHRKGA-AVVLEAANPA 210 Query: 202 YPVDTVEMSDIEWIARIL 219 Y + +E R++ Sbjct: 211 YDPIELPAEQVEVQGRLV 228 >gi|17232400|ref|NP_488948.1| SOS function regulatory protein, LexA repressor [Nostoc sp. PCC 7120] gi|17134046|dbj|BAB76607.1| SOS function regulatory protein, LexA repressor [Nostoc sp. PCC 7120] Length = 201 Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 45/190 (23%), Gaps = 8/190 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 + I PS + + + + Q E E + + Sbjct: 8 QQELYEWLAEYIRIHQHSPSIRQMMQAMNLKSPAPIQSRLEHLRTKGYIEWTEGKARTIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYR 152 G G G + + + + Q + SM L Sbjct: 68 VLQPIKQGVPVLGAIAAGGLIE--PFTDAVEHIDFSNFVLPAQTYALRVTGDSMIEDLIT 125 Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD++ L + G + + K G I L N Y V Sbjct: 126 DGDLVFLRPVPEPDQLKNGTIVAARVDGYGNTLKRFYR-SGDRITLKPANPKYNPIEVAA 184 Query: 210 SDIEWIARIL 219 +E ++ Sbjct: 185 IQVEVQGSLV 194 >gi|54294587|ref|YP_127002.1| hypothetical protein lpl1663 [Legionella pneumophila str. Lens] gi|54297618|ref|YP_123987.1| hypothetical protein lpp1669 [Legionella pneumophila str. Paris] gi|53751403|emb|CAH12821.1| hypothetical protein lpp1669 [Legionella pneumophila str. Paris] gi|53754419|emb|CAH15903.1| hypothetical protein lpl1663 [Legionella pneumophila str. Lens] Length = 138 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM+ GDILI++ I+ G ++ Sbjct: 28 GDDYIE--SMLDLNEYLIKHPASTFFVRASGESMINAGIYSGDILIVDRGIEATHGKIVI 85 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G++ K L + G+ + L++ N +P + I ++ Sbjct: 86 VALN-GELTVKRLSRQHGQ-VKLLAENPDFPPIDITEEYDMVIWGVV 130 >gi|283852604|ref|ZP_06369871.1| putative phage repressor [Desulfovibrio sp. FW1012B] gi|283572052|gb|EFC20045.1| putative phage repressor [Desulfovibrio sp. FW1012B] Length = 241 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 33/237 (13%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------ATN 66 I + +R+ S L R G+ ++ N+ + P + + KIL Sbjct: 7 IQALLDRYRGNQSELVRLTGVPQSTLNRLFKGTG-----SPKADILAKILDAVGAKLVLP 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125 + PL + G + + + Sbjct: 62 GERPETTRDVCWVDAKIVSAGDGQPLPPSENYFAVPLVGEAGAGPGVMSDDVIKSWVLVY 121 Query: 126 PHNGIYAIQTQDTRHKT--QDTSMLPLYRKGDILILNSA--IQVNCGDR--LLIKPRTGD 179 H +++ + TSM PL GDI++ + G + + G Sbjct: 122 RHQHAVRLKSNLLAVEIGQGSTSMEPLLHPGDIVLCDRDDFKPTKPGGIFLVREPGQHGG 181 Query: 180 IVAKVLISRRGRSIDLMSL------NCCYPVDTVEM-----SDI--EWIARILWASQ 223 K + + L++ N P +T + +I I R +WA Q Sbjct: 182 AKIKRVSIKPVDHDLLITFYSQDTVNS--PPETFSLRGDYNDNITEAIIGRCVWAWQ 236 >gi|258545393|ref|ZP_05705627.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826] gi|258519362|gb|EEV88221.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826] Length = 284 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 27/276 (9%), Positives = 63/276 (22%), Gaps = 71/276 (25%) Query: 14 DRMAERHNL----TPSGLARKAGLDPTSFNKSKRFGIEG--------------------- 48 R+ E+ L + L G+ T+ + ++ Sbjct: 5 KRLLEQRKLAGYSSQEQLGDALGVSFTTIARWEKDQSPIPSDKLVGMNALGLDAVYILTG 64 Query: 49 ---------RNRWPSTESIF--------------------KILAATNETICQLLDLPFSD 79 + R I ++ T ++ Sbjct: 65 KTGDVAGFQKPRSRKNNEIAESQNTKPATSPVLGDEIVADQMADGTWRVRSSSGEILRGT 124 Query: 80 GRTTEKKEKEIPLLY--------FPPSGSGGFFDSGVFPTGNKW----NTV--GVPEIRS 125 + +E Y + G V + + Sbjct: 125 TDEVIRHLRERAAPYEAGRDRTPDVNDYAWIPLYDVEVSAGGGRFFDGENVLTYLAFTKY 184 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + SM P + D ++++ + + + K L Sbjct: 185 SLRKQGLQPDMLACVRVSGDSMEPTIQSNDAVMIDMRQTTADSGIFVFRH-GEVLYLKRL 243 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220 + + ++S N YP ++ DI+ I + +W Sbjct: 244 MREGAG-VRVISDNEIYPSWLIQPGEDIQIIGKRVW 278 >gi|294789597|ref|ZP_06754832.1| putative prophage repressor protein [Simonsiella muelleri ATCC 29453] gi|294482534|gb|EFG30226.1| putative prophage repressor protein [Simonsiella muelleri ATCC 29453] Length = 243 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 16/219 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 F+ K+I+ L LA K G+ + N + + + Sbjct: 37 FTLKEIFNRKKA---ELELKQELLAEKLGISQSGLNHYLNGTN-----LLNAQIASQFAR 88 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + + R K + G + + TG Sbjct: 89 ELRISVDDFSERLAEEIRQMAKMVNNKNSSVSIQGSNHG---TQNYFTGQSQTNTVNNNF 145 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 +++ D +MLP + +G L ++++ ++ + Sbjct: 146 LPSEPHSGSLKK----IVMPDNAMLPTFPQGSELTIDTSQTAIIDGKIYEIQSGERFFIR 201 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-WA 221 + S+ S+ ++ N + V +++ + R++ W+ Sbjct: 202 KIFSQISGSLKIVCDNPEFESAIVSSENVQIVGRVIRWS 240 >gi|288575295|ref|ZP_05976691.2| putative phage repressor [Neisseria mucosa ATCC 25996] gi|288568389|gb|EFC89949.1| putative phage repressor [Neisseria mucosa ATCC 25996] Length = 239 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 19/214 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + ++ N+T LA + D + ++ + + + I A Sbjct: 27 EIGKIIRQRRKQLNMTQEELALEVNSDAGNLSRVENG-----KQGIPLDKIELYAKALRC 81 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 LL + + +D TG + + Sbjct: 82 RPADLLVEETQVSEPPLPLG--FIRIPLLDAIQAFNWDKLKSHTGELDISDWLISSAD-- 137 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 I T K D SM+P +++G+++I++ + GD +L+ D++ + Sbjct: 138 -----ISTDSFGFKIMDFSMMPEFKQGELVIIDPELTPEAGDIVLVATVNRDVLLRKYKQ 192 Query: 188 RR---GRSI--DLMSLNCCYPVDTVEMSDIEWIA 216 R S +L LN + + + S+++ + Sbjct: 193 RGISDDGSFIYELHPLNDDFEILSSTSSELKILG 226 >gi|123968457|ref|YP_001009315.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. AS9601] gi|123198567|gb|ABM70208.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. AS9601] Length = 138 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + E + + + + + SM+ + D++I++ ++ G+ ++ Sbjct: 28 ADDYTE--ENIDLNEHLISNPFSTFFLRVKGDSMINAGIKDKDLIIVDKSLTARPGNIII 85 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G+ K L + + L + N YP + D++ ++ Sbjct: 86 AMID-GEFTIKRLSIK-NNELYLKAENHNYPDFRFKNHIDVQIWGVVI 131 >gi|325283869|ref|YP_004256410.1| LexA repressor [Deinococcus proteolyticus MRP] gi|324315678|gb|ADY26793.1| LexA repressor [Deinococcus proteolyticus MRP] Length = 221 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 56/224 (25%), Gaps = 34/224 (15%) Query: 1 MTSFSHK----KIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M+ H +I E + + H +T L L + + + Sbjct: 1 MSPLDHAPRQREILEQVAALEAAHQPVTTQSLTHALSLPRQNVRQYLLALRDK------- 53 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + T +E + P + G Sbjct: 54 ------------GLIHYEASDRQRALITLTEEGRKLTEHSYPVLGTVAAGHPILAEGEIQ 101 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI-QVNCGDRL-L 172 V + + ++ D SM+ GD++ + + + G+ + + Sbjct: 102 RYV------TRLEDVLDLKPGDFLLPVSGDSMIGAGIFDGDLVAIRPSQAEPLRGEIVLV 155 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + P K + L S N Y V + +E Sbjct: 156 LLPDVSTATLKRWNRL-NGVVSLHSENPAYAPIVVPATSVEIQG 198 >gi|260767588|ref|ZP_05876524.1| SOS-response repressor and protease LexA [Vibrio furnissii CIP 102972] gi|260617488|gb|EEX42671.1| SOS-response repressor and protease LexA [Vibrio furnissii CIP 102972] gi|315178782|gb|ADT85696.1| LexA repressor [Vibrio furnissii NCTC 11218] Length = 208 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 62/214 (28%), Gaps = 32/214 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIRSKIDETGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + + G G G Sbjct: 46 HLKALARK----------QVIEIVPGASRGIRILVEAANDNADDAGLPLIGRVAAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V+ G ++ + Sbjct: 96 AQEHVEAHYQVDPGMFRPQADFLLRVHGESMKNIGIMDGDLLAVHKTQDVHNGQVVVAR- 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + + L + N + V++ Sbjct: 155 VEDDVTVKRLERKGA-KVLLHAENEAFSPIEVDL 187 >gi|13431650|sp|Q9PH24|LEXA_XYLFA RecName: Full=LexA repressor Length = 211 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 23/209 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I ++PS +AR G G+ ++ Sbjct: 7 QQAILSLITNHINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 56 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + ++ T + +L P G G Sbjct: 57 RVPRQARGIRLKHLTEVDETALALQSEDVLRLPVLGRVAAGQPIGADIGEG--------R 108 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + ++ D + Q SM GD++ ++ + G ++ + +I Sbjct: 109 VVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVARID-DEITV 167 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N + V Sbjct: 168 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 195 >gi|153212036|ref|ZP_01947853.1| repressor protein C2 [Vibrio cholerae 1587] gi|124116832|gb|EAY35652.1| repressor protein C2 [Vibrio cholerae 1587] Length = 225 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 62/226 (27%), Gaps = 23/226 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARK-------AGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + + + ++ + +T L K A + + + + + Sbjct: 2 ETLGKRVEWRRTQLKITQDELVTKVKKLLPDASFNRVTVSNIENEVQKSFKENVFLVVCR 61 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTV 118 + + + + G + P N+ + Sbjct: 62 VLKCRPDWLAFGTGPVEDKGPNIAQVGPPVEQKCPILSWVQAGMWTEMGSPVSNEDVELM 121 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIK-PR 176 P S + + SM Y +GD L ++ + GD ++ Sbjct: 122 PCPVKCS---------AGTYVLRVRGDSMRHEYEEGDYLFVDPTKIEPANGDYVIAMLED 172 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPV--DTVEMSDIE-WIARIL 219 + + K I GR L + N YP + ++ + +++ Sbjct: 173 SKEATFKQYIELDGRK-MLKATNPDYPPEMRFLPINGTCLILGKVI 217 >gi|22536726|ref|NP_687577.1| prophage LambdaSa1, repressor protein [Streptococcus agalactiae 2603V/R] gi|22533569|gb|AAM99449.1|AE014217_4 prophage LambdaSa1, repressor protein, putative [Streptococcus agalactiae 2603V/R] Length = 265 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 76/258 (29%), Gaps = 48/258 (18%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK--RFGIEGRNRWPSTESIFKILAATN 66 + + I + + +NL+ + A+++G+ + + R G+ PS I K+ Sbjct: 3 LGKYIKKYRDTNNLSMAEFAKESGISKAYVSILEKNRDPRNGKEIIPSIPIIKKVSDTIG 62 Query: 67 ETICQLLDLPFSDG-----------------------------RTTEKKEKEIPLLYFPP 97 + LL+ + + ++K Sbjct: 63 ISFDDLLNSLDENQIVALNETKTEKNLTSSTLQKITSTSSQLEQPRQEKVLSFANEQLEE 122 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY---------------AIQTQDTRHKT 142 + T V + + G Y DT K Sbjct: 123 QNKVVSMFDRKVEETENYITDYVEGLVAAGLGAYQEDNLHMEVKLRADDVPDKYDTIAKV 182 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM PL + D+L + + QV+ D + G K L + L SLN Y Sbjct: 183 AGNSMEPLIQDNDLLFVKVSSQVDMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNKSY 241 Query: 203 PVDTVEMSD-IEWIARIL 219 + +D I I ++ Sbjct: 242 EEIYLSENDNIRTIGEVV 259 >gi|15836727|ref|NP_297415.1| LexA repressor [Xylella fastidiosa 9a5c] gi|9104904|gb|AAF82935.1|AE003865_12 LexA repressor [Xylella fastidiosa 9a5c] Length = 223 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 23/209 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I ++PS +AR G G+ ++ Sbjct: 19 QQAILSLITNHINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 68 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + ++ T + +L P G G Sbjct: 69 RVPRQARGIRLKHLTEVDETALALQSEDVLRLPVLGRVAAGQPIGADIGEG--------R 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + ++ D + Q SM GD++ ++ + G ++ + +I Sbjct: 121 VVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVARID-DEITV 179 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N + V Sbjct: 180 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 207 >gi|329122224|ref|ZP_08250815.1| hypothetical protein HMPREF9095_0033 [Haemophilus aegyptius ATCC 11116] gi|327474070|gb|EGF19482.1| hypothetical protein HMPREF9095_0033 [Haemophilus aegyptius ATCC 11116] Length = 322 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 30/256 (11%), Positives = 68/256 (26%), Gaps = 48/256 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ S + + + + A G+ S K G R P I + Sbjct: 68 MTTLSG-----RLKALLVEKGINQTEFANMIGIAQPSMQKIL----AGETRNPR--KIVE 116 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94 I T LL + +T + + + L Sbjct: 117 IAKELGTTPDYLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLQKQQVSLK 176 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQDT 145 P+ F P + + Sbjct: 177 TKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFNE 236 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PV 204 SM P+ K D++ +++ + G+ + + ++ + L ++ ++ N Sbjct: 237 SMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGSS 296 Query: 205 DTV-EMSDIEWIARIL 219 + ++S + + R + Sbjct: 297 FEIDDLSRLNVLGRCV 312 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 11/79 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ E + + N+T + LA G + + + + + R +I + Sbjct: 1 MTTL-----GERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49 Query: 61 ILAATNETICQLLDLPFSD 79 I A L Sbjct: 50 IANALGVDPNWLKYGSTKM 68 >gi|330971619|gb|EGH71685.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 119 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 6/95 (6%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 SM + G IL ++ + + G + + L + Sbjct: 13 PKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHGGILRVRYLYRLPNGGL 72 Query: 194 DLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222 L S N YP + D I + I W S Sbjct: 73 RLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 107 >gi|323159200|gb|EFZ45190.1| peptidase S24-like family protein [Escherichia coli E128010] Length = 103 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 I + SM P +++GDI+I++ + G+ ++ K + K Sbjct: 6 IPETCFALRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNDGHEATFKKYRPLGIGI 65 Query: 193 --IDLMSLNCCYPVDTVEMSDIEWIA 216 +L+ LN YP+ +++ I Sbjct: 66 DDFELIPLNPDYPIFRSADMNLQIIG 91 >gi|78779740|ref|YP_397852.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9312] gi|78713239|gb|ABB50416.1| SOS-response transcriptional repressor, LexA [Prochlorococcus marinus str. MIT 9312] Length = 205 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 46/188 (24%), Gaps = 11/188 (5%) Query: 41 SKRFGIEGRNRWPSTESIFKILA-ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 R + PS + + + + I L G ++ K L Sbjct: 18 WIRDYMNEFQHSPSIRQMMQAMGLKSPAPIQSRLKHLQDKGFIKWQEGKARTLQIVEDVF 77 Query: 100 SGGFFDSGVFPTGNKWNTV-GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 G G G T E + SM GD + Sbjct: 78 RQGIPILGSIAAGGLIETFNDFQEELD--ISSVIKKKGLFALIVNGDSMKDAFIADGDTV 135 Query: 158 ILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 +L + G + K + G + L + N Y +E I Sbjct: 136 LLEPIESTGSIKNGTIVSAYIPGSGATLKYFYKK-GNKVSLEAANPNYSPIVLENEQISI 194 Query: 215 IARI--LW 220 R+ +W Sbjct: 195 QGRLCAVW 202 >gi|88800078|ref|ZP_01115648.1| LexA repressor [Reinekea sp. MED297] gi|88777204|gb|EAR08409.1| LexA repressor [Reinekea sp. MED297] Length = 200 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 39/216 (18%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I E P + +A+ G + + E Sbjct: 1 MEKLTARQQQVLDVIKDNIEDTGYPPTRAEIAKTLGFKSPN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA +E P S V + Sbjct: 45 EHIKALARKGYIEIVQGASRGIRLPESESGL---------PVVGRVAAGSPVLAEEHVAE 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 V +P+ T D + Q SM + + D++ ++ +V GD ++ + Sbjct: 96 YVDLPKGLFH-------PTADFLLQVQGLSMKNIGILEDDLIAVHKTDRVRNGDIVVAR- 147 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K + G ++ L N + V + + Sbjct: 148 VGDDVTVKRYEKK-GHTVTLYPENDDFEPIQVNLRE 182 >gi|297250266|ref|ZP_06863965.2| putative repressor protein [Neisseria polysaccharea ATCC 43768] gi|296839394|gb|EFH23332.1| putative repressor protein [Neisseria polysaccharea ATCC 43768] Length = 190 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 + + + SM + GD +++N A D L + D+ K + + Sbjct: 97 DKLSVIAVKGDSMEGILNHGDNILINHAET-EPRDGLYVLRIGNDLFVKRVQRMP-GKLL 154 Query: 195 LMSLNCCYPVDTVEM----SDIEWIARILW 220 + S N Y +++ DI + R+ W Sbjct: 155 VTSANPHYAPFEIDLSHTDDDIAIVGRVEW 184 >gi|150020298|ref|YP_001305652.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149792819|gb|ABR30267.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 244 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 23/229 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I ++ +++ LA++ G+ S + + I I KI + Sbjct: 2 DLGEKIKQLRLERDISQEQLAKRLGISRESISHYENNRIVPPVHILR--EIAKIFNVSVN 59 Query: 68 TICQLLDLPFSDGRTT----EKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPE 122 + + + + S S G + + P Sbjct: 60 YFFEEEHYDKNVKGESELVDYNIPQNFMGFMVVGSHSRGKLLNNKISKKQKGIPVLRFPN 119 Query: 123 IRSPHN----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGD- 169 + D + + PL KG +L++++ G+ Sbjct: 120 PSEGEPENQLIKVRYIDYLQKKDIDYALRLNSDIIEPLIPKGALLLVSTRNNRLPQNGEL 179 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + ++G ++ L++ N Y D ++ + Sbjct: 180 IVYYLNGKFGV---RWYFQKGDNVILIAENSKYLPIITTRVDFKFAGIV 225 >gi|330825883|ref|YP_004389186.1| peptidase S24/S26A/S26B [Alicycliphilus denitrificans K601] gi|329311255|gb|AEB85670.1| Peptidase S24/S26A/S26B, conserved region [Alicycliphilus denitrificans K601] Length = 189 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 55/194 (28%), Gaps = 33/194 (17%) Query: 31 AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90 AG+ + +R+ P ES ++ A + +++ + I Sbjct: 13 AGITQRAAQSVRRWFDASEPGLPDLESFARLCAGLGCSADEIIGALRPHADDEVHCAQLI 72 Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + + + G + M P Sbjct: 73 QVANCIQAITDSLAHHGQLGIP---------------------------MQVPGDEMAPH 105 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT---- 206 + GD++ ++SA+ G+ + G + + + R RSI L N Y Sbjct: 106 LKAGDLVFVDSAVTQLAGNGIYAFNCNGSLFIRRVERRMDRSIVLKCDNKAYQDYEWTGA 165 Query: 207 --VEMSDIEWIARI 218 +E + ++ Sbjct: 166 TAAAKRRVEILGKV 179 >gi|53803557|ref|YP_114590.1| LexA repressor [Methylococcus capsulatus str. Bath] gi|71658816|sp|Q605V8|LEXA_METCA RecName: Full=LexA repressor gi|53757318|gb|AAU91609.1| LexA repressor [Methylococcus capsulatus str. Bath] Length = 202 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 39/226 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++I + I R E P + +AR G+ Sbjct: 1 MKPLTVRQREILDCIRRSVENEGFPPTIAEIARAIGVSSP-------------------- 40 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L G + + G G G Sbjct: 41 ----------HGVREQLRALERKGVIELIPSASRGIRLLARAEEPGLPLIGKVAAGRPLL 90 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 T E D + Q SM GD+L++ A + G ++++ Sbjct: 91 TEAQVERYCQLGPELFEHKGDYLLRVQGMSMRDAGIIDGDLLVVQQAQEARSGQIVVVR- 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219 ++ K L G L N + V V+ + ++ Sbjct: 150 LHDEVTVKRL-RLEGALAYLEPANPEFSVIAVDPERQPLCIEGIVV 194 >gi|15988315|pdb|1JHC|A Chain A, Lexa S119a C-Terminal Tryptic Fragment Length = 137 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 3/116 (2%) Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155 G G G E + D + +M + GD Sbjct: 3 QEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMAMKDIGIMDGD 62 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 +L ++ V G ++ + ++ K L + G ++L+ N + V++ Sbjct: 63 LLAVHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 116 >gi|307129325|ref|YP_003881341.1| DNA-binding transcriptional repressor of SOS regulon [Dickeya dadantii 3937] gi|306526854|gb|ADM96784.1| DNA-binding transcriptional repressor of SOS regulon [Dickeya dadantii 3937] Length = 203 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 37/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A + G R P+ Sbjct: 1 MKALTTRQQQVYDLIRDHISQTGMPPTRAEIASQLGF-----------------RSPNAA 43 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + L G + G G G Sbjct: 44 E-------------EHLKALARKGVIEIVTGASRGIRLLMEEEDQGLPLIGRVAAGEPLL 90 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 91 AQQHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L++ N + V++ + Sbjct: 151 -EDEVTVKRLKKQ-GNVVQLLAENKEFAPIVVDLRE 184 >gi|261363945|ref|ZP_05976828.1| putative repressor protein [Neisseria mucosa ATCC 25996] gi|288567968|gb|EFC89528.1| putative repressor protein [Neisseria mucosa ATCC 25996] Length = 190 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 + + + SM + GD +++N A D L + D+ K + + Sbjct: 97 DKLSVIAVKGDSMEGILNHGDNILINHAET-EPRDGLYVLRIGNDLFVKRVQRMP-GKLL 154 Query: 195 LMSLNCCYPVDTVEM----SDIEWIARILW 220 + S N Y +++ DI + R+ W Sbjct: 155 VTSANPHYAPFEIDLSHTDDDIAIVGRVEW 184 >gi|325285953|ref|YP_004261743.1| peptidase S24/S26A/S26B [Cellulophaga lytica DSM 7489] gi|324321407|gb|ADY28872.1| Peptidase S24/S26A/S26B, conserved region [Cellulophaga lytica DSM 7489] Length = 144 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 4/127 (3%) Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSMLPL-YR 152 S S F G E R + + SM+ Sbjct: 13 DASSKSTSIFVDTGISAGFPSPADDFKENRISLDKELIKNPEATFFARVSGESMIGAGLE 72 Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 D+L+++ +++ + G+ K L + L N Y + + Sbjct: 73 DNDLLVIDRSLEPAHNKIAV-CYLDGEFTVKRL-KVENNLVWLQPENPNYKPIQITEENN 130 Query: 213 EWIARIL 219 I I+ Sbjct: 131 FIIWGIV 137 >gi|299533246|ref|ZP_07046630.1| putative phage repressor [Comamonas testosteroni S44] gi|298718776|gb|EFI59749.1| putative phage repressor [Comamonas testosteroni S44] Length = 220 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 29/218 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +AI R+ + + AG + + + R ESI K Sbjct: 22 GKAIGRLRDEM--------KAAGYAIGQGTLARIIAGDTGVR-----MESIQKFADFFQI 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + E + +P+ G T + R Sbjct: 69 S-----TGSLLHEPIEEGENDFVPVARLSVQVGAGNGRPVDVVTELGL----LQFRRDFL 119 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + SM P R G +L+LN A + ++ G+++ K Sbjct: 120 RSAGVSPINSAVVTVKGMSMEPTIRDGSVLLLNRADREPRAGQIYAFSWDGEMLVKRFQ- 178 Query: 188 RRGRSIDLMSLNCC---YPVDTVE-MSDIEWIARILWA 221 G +S N YP ++ ++ R +W Sbjct: 179 LVGGQWRAVSDNADKSEYPDIIIDGKAETLIQGRAIWV 216 >gi|158340060|ref|YP_001521230.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina MBIC11017] gi|158310301|gb|ABW31916.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina MBIC11017] Length = 144 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172 + + P + + SM D++I++ ++ G ++ Sbjct: 32 ADDHLQNPLNLD--EALIPHPGATFLMRVDGDSMKGCGIFSEDLVIVDRSLNPVDGSVII 89 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + I L + N YP ++ + ++ Sbjct: 90 AVLD-GEFTVKRF-RQSNGRILLAAENPDYPPIVIQDGSDFHVWGVV 134 >gi|257784573|ref|YP_003179790.1| SOS-response transcriptional repressor, LexA [Atopobium parvulum DSM 20469] gi|257473080|gb|ACV51199.1| SOS-response transcriptional repressor, LexA [Atopobium parvulum DSM 20469] Length = 217 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 64/216 (29%), Gaps = 25/216 (11%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFKILA 63 I++ I ++H PS + L P++ + + + +R P KI++ Sbjct: 13 IYDYICSYTDQHGYPPSVREIGTAVNLASPSTVHMHLKVLEQFGLIDRDPKKPRTMKIVS 72 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 Q + + ++ ++ P + + N ++ +P Sbjct: 73 -------QASNASDTAKLAPVTQDVANNVISLP-LVGRVAAGTPILAEQNVEESLSLPTS 124 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM+ GD +++ + G+ ++ Sbjct: 125 IVG-------DSSSFILRVRGESMINAGIFDGDYIVVKEQQDAHDGEIVVALID-DSATV 176 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K I L N V+ + R+ Sbjct: 177 KTFYR-ENDRIRLQPENDFMEPIYVKNP--VILGRV 209 >gi|87301143|ref|ZP_01083984.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. WH 5701] gi|87284111|gb|EAQ76064.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. WH 5701] Length = 212 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 53/190 (27%), Gaps = 7/190 (3%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL-DLPFSDGRTTEKKEKEIPLL 93 I+ PS + + + + Q G T ++ + L Sbjct: 19 QQQLYDWLVQYIQQHRHSPSIRQMMEAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQ 78 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YR 152 PSG+GG G G + R + + SM+ Sbjct: 79 LLGPSGTGGIPVLGSVAAGGLIESFDDVRERLDLAPLLDTRG-LFALTVNGDSMVDAHID 137 Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GDI+++ I G + K + G + L + N Y +E Sbjct: 138 DGDIVLMEPVIDPARLRPGTIVAAHVAGSGTTLKHFSCK-GGKVRLEAANPAYAPIELEA 196 Query: 210 SDIEWIARIL 219 + R++ Sbjct: 197 EQVTVQGRMV 206 >gi|308187276|ref|YP_003931407.1| LexA repressor [Pantoea vagans C9-1] gi|308057786|gb|ADO09958.1| LexA repressor [Pantoea vagans C9-1] Length = 210 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 75/220 (34%), Gaps = 22/220 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + + I + LT LA++ + + ++ ++ P E++ ++ Sbjct: 1 MKNETLGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEET-----LPRGENLLRLAE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A T L+D + L P + + + Sbjct: 56 ALGCTPAYLIDGD----GPVFSENSWAGLHQIPLLSQRDVAQWLNDASSVRHELL----- 106 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + A+ Q + ++ +M P +GD++I++ ++ GD ++ + + + + Sbjct: 107 ---MHNDMALSQQSFAIRVEEQAMTPAILRGDVVIIDPSLAPQPGD-CVLAMQQQNALLR 162 Query: 184 VLISRRGRS----IDLMSLNCCYPVDTVEMSDIEWIARIL 219 R +L +N +P ++ I ++ Sbjct: 163 TWRQRGSEEGVAQFELAPVNINFPELHSSRDSLQLIGTLV 202 >gi|212703112|ref|ZP_03311240.1| hypothetical protein DESPIG_01151 [Desulfovibrio piger ATCC 29098] gi|212673378|gb|EEB33861.1| hypothetical protein DESPIG_01151 [Desulfovibrio piger ATCC 29098] Length = 134 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 11/131 (8%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI-----QTQDTRHKTQDTSMLPLYRKGD 155 G RS + + SM P D Sbjct: 1 MIPMVEARLSAGQGSLQTDGNSERSYAFRSDFLHRKGNPDNMVLMRVSGDSMQPEILNND 60 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---- 211 +++L+ + R+ I K + + L S N YP +++ D Sbjct: 61 VVLLDQSKTDILPGRIYAVGFEEAIYLKRVDMLP-GKVILKSANPAYPPVELDIRDQQRD 119 Query: 212 -IEWIARILWA 221 I ++LW+ Sbjct: 120 AFRVIGQVLWS 130 >gi|149918134|ref|ZP_01906627.1| LexA repressor [Plesiocystis pacifica SIR-1] gi|149821139|gb|EDM80545.1| LexA repressor [Plesiocystis pacifica SIR-1] Length = 207 Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 9/119 (7%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIY---AIQTQDTRHKTQDTSM-LPLYRKGDILILNSAI 163 G R + + A + + SM GD + + Sbjct: 84 QVAAGQPILAQENISDRVTIDRFFVGKAPSKEVFGLVIRGDSMIEDGIYDGDYIFVRKQS 143 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 G+ + G+ K + G + L N V S+ I+ I +++ Sbjct: 144 TAENGEIAV-VMIEGEATCKRVF-HEGDRVRLQPANETMAPIYVHRSEFRAIDVIGKVV 200 >gi|161784699|emb|CAP54238.1| putative regulator protein [Gluconacetobacter diazotrophicus PAl 5] Length = 273 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 75/266 (28%), Gaps = 53/266 (19%) Query: 1 MTSFS----HKKIWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M S +++I + R+ E + T +A + + ++ + R Sbjct: 8 MRDLSDLAKNRQIEPMVIRLREVVDRTGGAKAVAARTDIPLSTLSGYLSG------RELK 61 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN- 113 KI A ++ L ++ + G+ Sbjct: 62 LSVARKITEACGVSLDWLAAGEDGPAAREFGNARQAGPESVEFLNYDVILSAHQGVDGDS 121 Query: 114 --KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR- 170 + +P P + I + + + SM P+ GDIL+ +N Sbjct: 122 SYIETRISIPRDFLPLS-IQSNTDNISAVTAKCDSMNPIIDDGDILLERDDFGLNRNMGT 180 Query: 171 -------------------------LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 + ++ + LI + ++ ++S N YP + Sbjct: 181 QIAENLIQHAVWIGGQHGHTLTSGSIYALRVENTLLVRRLILKTNGNVQVISENPRYPTE 240 Query: 206 TVEMSDI-----------EWIARILW 220 + D+ I R++W Sbjct: 241 ELNAEDVRRMVQDDGFPARIIGRVIW 266 >gi|148359239|ref|YP_001250446.1| SOS (error prone) mutagenesis protein UmuD [Legionella pneumophila str. Corby] gi|296107284|ref|YP_003618984.1| umuD SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella pneumophila 2300/99 Alcoy] gi|148281012|gb|ABQ55100.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella pneumophila str. Corby] gi|295649185|gb|ADG25032.1| umuD SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella pneumophila 2300/99 Alcoy] gi|307610400|emb|CBW99969.1| hypothetical protein LPW_17261 [Legionella pneumophila 130b] Length = 174 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM+ GDILI++ I+ G ++ Sbjct: 64 GDDYIE--SMLDLNEYLIKHPASTFFVRASGESMINAGIYSGDILIVDRGIEATHGKIVI 121 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G++ K L + G+ + L++ N +P + I ++ Sbjct: 122 VALN-GELTVKRLSRQHGQ-VKLLAENPDFPPIDITEEYDMVIWGVV 166 >gi|145588889|ref|YP_001155486.1| putative prophage repressor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047295|gb|ABP33922.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 163 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + + SML GD ++++ A++ D ++ + + Sbjct: 50 EDGLDLNHYLVQNKPATFMFTVKGDSMLGAGICDGDKVVVDKALKPKHKDIVVAVVDS-E 108 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 K L R I+L N + T E S+++ ++ Sbjct: 109 YTIKRLYQLR-GRIELQPENPHFEPITFNEGSELQIWGVVV 148 >gi|212710565|ref|ZP_03318693.1| hypothetical protein PROVALCAL_01628 [Providencia alcalifaciens DSM 30120] gi|212686802|gb|EEB46330.1| hypothetical protein PROVALCAL_01628 [Providencia alcalifaciens DSM 30120] Length = 205 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 3/104 (2%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G E + D + SM + GD+L ++ V+ Sbjct: 85 VAAGEPLLAQEHIESHYQVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNVHN 144 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G ++ + ++ K ++G ++L++ N + V++ + Sbjct: 145 GQIVVARI-EDEVTVKRF-KQQGNRVELIAENPEFAPIVVDLRE 186 >gi|319762239|ref|YP_004126176.1| lexa repressor [Alicycliphilus denitrificans BC] gi|317116800|gb|ADU99288.1| LexA repressor [Alicycliphilus denitrificans BC] Length = 193 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 3/102 (2%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 PE+ + + + + + HK + SM +GD++++ GD ++ Sbjct: 86 EEPEVLTIDDYLIDDPNRTSLHKVRGDSMKDAGILEGDLVVVEHHTPTKPGDIVVAWAD- 144 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K L+ L N Y + +E + ++ Sbjct: 145 NELTVKTLLLDPQSRYYLQPANSAYKPI-FPATSLEVMGVVI 185 >gi|225855406|ref|YP_002736918.1| cI repressor [Streptococcus pneumoniae JJA] gi|225724232|gb|ACO20085.1| cI repressor [Streptococcus pneumoniae JJA] Length = 250 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 68/248 (27%), Gaps = 44/248 (17%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW---------------- 52 + +I + + LT LA G + + + + + Sbjct: 4 LGSSIKEVRKSKKLTQKKLAELTGFKQNTISNHENGNRQLDEKDIRIYAQALEVSPQYLF 63 Query: 53 -----------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS--- 98 P+T I I + ++ E+E + + Sbjct: 64 DLAKPSSIEIIPTTSPIQTIYDELEPPRQGKVLNYAKRQLKEQRNEEETKINEVSENIIR 123 Query: 99 -----GSGGFFDSGVFPTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR 152 + +GV G+ + S + SM P + Sbjct: 124 LDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYDAIA-YVVGNSMEPKIK 182 Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-D 211 GD L + + QV+ + + G K L + L SLN Y ++ S D Sbjct: 183 NGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDYEDIHLDESND 236 Query: 212 IEWIARIL 219 I I ++ Sbjct: 237 IRTIGEVV 244 >gi|195970156|ref|NP_386132.2| putative phage repressor protein [Sinorhizobium meliloti 1021] gi|307311314|ref|ZP_07590957.1| putative phage repressor [Sinorhizobium meliloti BL225C] gi|307318847|ref|ZP_07598279.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|187904193|emb|CAC46605.2| Phage-related repressor protein C [Sinorhizobium meliloti 1021] gi|306895568|gb|EFN26322.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306899615|gb|EFN30243.1| putative phage repressor [Sinorhizobium meliloti BL225C] Length = 229 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 66/228 (28%), Gaps = 30/228 (13%) Query: 11 EAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIE---------GR-----NRWPST 55 E + + S A G+ +++ + E GR W T Sbjct: 6 ERLREARVKAGYRFASDAANALGIVASTYRAHENGQNEFELSEAEVYGRKFNVDPLWLLT 65 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + +I T + + K + G D GN Sbjct: 66 GTDRRI--PTGSALGSTMTEIDVPNARIGAKVIGQGEKIPVFGQAVGGVDGEFIMNGNVL 123 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 V P I S +G YA SM P Y G++ ++ + +V GD ++ + Sbjct: 124 YEVMAPPILSDISGAYA-------VSVSGDSMYPRYEDGEVCFVDPSRRVRKGDYVIAQI 176 Query: 176 RTGD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R + K + + L N + E + + + I Sbjct: 177 RLEEGGALLAYVKKFVRHNSSELVLEQFNP-HKELRFEANTVHSVHYI 223 >gi|160872667|ref|ZP_02062799.1| peptidase, family S24 [Rickettsiella grylli] gi|159121466|gb|EDP46804.1| peptidase, family S24 [Rickettsiella grylli] Length = 211 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 24/206 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + S LAR+ G+ ++ + P ++ I +I Sbjct: 3 RILKELMAELGINESELARRTGIGQPVVHRICSGETD----NPKVATLSPIANFFAISIS 58 Query: 71 Q-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 Q D + ++IPLL + P + V Sbjct: 59 QLIGDEPLPADRIPGTFNPGVQGWRQIPLLTWKQVLYWPDLSEKSTPLPSISTDVP---- 114 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + +DT+M P + +G +L+++ ++ N D ++ ++ Sbjct: 115 ---------MSQYAYAVSARDTTMEPRFPEGTLLLIDPDLKPNSLDFAIVHIEGHELPHF 165 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEM 209 I G L LN + ++ Sbjct: 166 KQILIDGGHTILKPLNTDFKTLLLDK 191 >gi|56459373|ref|YP_154654.1| LexA repressor [Idiomarina loihiensis L2TR] gi|61213260|sp|Q5QUP5|LEXA_IDILO RecName: Full=LexA repressor gi|56178383|gb|AAV81105.1| SOS-response transcriptional repressor [Idiomarina loihiensis L2TR] Length = 205 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 61/216 (28%), Gaps = 35/216 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I + P + +A K G + S E Sbjct: 1 MRPLTPRQSEILELIKDNLHATGMPPTRAEIAHKLGFRSAN----------------SAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA + I L+ + G G G Sbjct: 45 EHLKALARKGVIEILPGM------------SRGIRLVGDDYDIADGLPLIGQVAAGEPLL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + K SM + GD+L ++ Q G ++ + Sbjct: 93 AEQHVEGHYKIDESLFHPAASFLLKVNGMSMRDIGILDGDLLAVHKTEQARNGQIVVAR- 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K +RG++I L N + TV +++ Sbjct: 152 VEDEVTVKRF-EQRGKTILLHPENEDFSTITVNLAE 186 >gi|213961921|ref|ZP_03390186.1| transcriptional regulator [Capnocytophaga sputigena Capno] gi|213955274|gb|EEB66591.1| transcriptional regulator [Capnocytophaga sputigena Capno] Length = 258 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 64/216 (29%), Gaps = 8/216 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + + L+ S + + N + + E ++ Sbjct: 2 NVKERIKKFIDHEGLSISAFEKTIEVSNGYVNSISKNIGIDKLNVI-VEKYPQLSLEWLI 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEIRS 125 T + P T K ++ G ++ + E Sbjct: 61 TGKGEMLKPTLPTTKTNKLLMPKVVVVDDKDNERIPLVPIRAQAGYLTGYDDITFIESLP 120 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVA 182 ++ + + SM P + ++ ++ + ++ ++ + I+ Sbjct: 121 TYSLPNMTNGTYRMFQVKGLSMYPTLQDSSYVVGRFVDDWLALSSNRVCVVVTQNDGIIV 180 Query: 183 KVLIS--RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 K + + + ++ S N +P +V DI+ I Sbjct: 181 KRITNTLEKYGTLYCRSDNRDFPHLSVAAEDIKEIW 216 >gi|197116899|ref|YP_002137326.1| LexA repressor [Geobacter bemidjiensis Bem] gi|197086259|gb|ACH37530.1| LexA repressor [Geobacter bemidjiensis Bem] Length = 249 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 26/231 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNL--TPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57 MT K++ + I AERH + +A G + R + + + Sbjct: 1 MTP-KQKRVLDFILSFAERHGFQPSQQEIASGCGFGSLGTVQHYLRALEKDG--HLTRQW 57 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K C + K P + P Sbjct: 58 NAKRGLQLANPPCPPFAKGGTQVLAQRFVGKYSPGSPESQELHFAEGGNPQTPAVAPIIG 117 Query: 118 VGVP----------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 + +P A + + SM+ + GD + ++ Sbjct: 118 MELPLVGIVAAGRPVQAFQLADAIEVPSAMAGPGNVVY-EVRGDSMVEMGIMDGDYVAVH 176 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G ++ G I K + + G SI L N V D Sbjct: 177 PQAVAETGQTVI-AEVNGSITIKKYVRK-GNSIQLQPANSAMSPIMVTEDD 225 >gi|159528148|ref|YP_001542711.1| SOS response transcriptional regulator [Fluoribacter dumoffii] gi|159157993|dbj|BAF92682.1| SOS response transcriptional regulator [Fluoribacter dumoffii] Length = 168 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + + SM GD L+++ +I+ + G ++ Sbjct: 58 ADDYIE--GYLDLNTKFIKHPSSTFVLQATGDSMVEAGIFSGDWLLVDRSIEPSDGRIVI 115 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + G + L+ N + + I ++ Sbjct: 116 AAVN-GELTVKRLSKK-GSQVQLLPANPKFKPIDITQECEMVIWGVV 160 >gi|145632102|ref|ZP_01787837.1| LexA repressor [Haemophilus influenzae 3655] gi|144987009|gb|EDJ93539.1| LexA repressor [Haemophilus influenzae 3655] Length = 207 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + + R E + P + ++R+ G E + S + Sbjct: 1 MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +I+ L G G G Sbjct: 54 GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGCVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K SM + GD+L ++S V G ++ + Sbjct: 94 AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G I L + N + V + + Sbjct: 154 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 187 >gi|260911961|ref|ZP_05918525.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260633908|gb|EEX52034.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 231 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 63/226 (27%), Gaps = 10/226 (4%) Query: 3 SFSHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRF----GIEGRNRWPSTE 56 +++ EA + + L T LA G + +K+ R + R + Sbjct: 1 MDREERLREAFN-YVKSKGLVHTQKDLAVHMGTTEANMSKALRGDKLVLTDNFLRRFNQS 59 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + ++ + G+ + Sbjct: 60 FDNIFSYQWLCLGEGQMINDEAQTELLSQRLGRTASVGLSDEVYSIPLLPISAQGGSLND 119 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNCGDRLLIK 174 V + I I+ D SM P Y G +++ R+ + Sbjct: 120 FVVSVKNNECEKIISPIKGVDYAITVSGESMSPEYPSGSQVLIKKINERAFIDWGRVYVL 179 Query: 175 PRTGDIVAKVLI-SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 V K L S + S+N YP V M D+ + R+L Sbjct: 180 DTCNGTVIKRLFPSDAAGCVVCKSINPEYPSFEVSMEDVYGVYRVL 225 >gi|294790734|ref|ZP_06755892.1| UmuD protein [Scardovia inopinata F0304] gi|294458631|gb|EFG26984.1| UmuD protein [Scardovia inopinata F0304] Length = 146 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 2/102 (1%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 S + + SM GDILI++ ++ D ++ Sbjct: 21 YFDGDFSFDENVITHPDTTFVVRVSGDSMEGAGIFNGDILIVDKSLAAEESDIVIAAIN- 79 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L+ L N YP + + + I ++ Sbjct: 80 GELTVKRLLLNTDNLPFLHPENRAYPDIPLYLEEEVAIWGVV 121 >gi|260434281|ref|ZP_05788251.1| LexA repressor [Synechococcus sp. WH 8109] gi|260412155|gb|EEX05451.1| LexA repressor [Synechococcus sp. WH 8109] Length = 214 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 51/201 (25%), Gaps = 23/201 (11%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEK 85 LA G S + ++ R P+ +S + L Q Sbjct: 27 LADYIGTHRHSPS-IRQMMQAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQLLGDMV 85 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 IP+L +G + + + + Sbjct: 86 GAAGIPVLGAVAAGGLVTAFD------DVQEHLDLAPVLETRG--------LFALTVNGD 131 Query: 146 SMLP-LYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM+ GD++++ G + K + ++ L + N Sbjct: 132 SMVDSHIADGDVVLMEPVQDPQRLRNGTVVSALVAGSGTTLKHFHRQGA-TVVLEAANPA 190 Query: 202 YPVDTVEMSDIEWIARI--LW 220 Y + +E R+ +W Sbjct: 191 YQPIELPAEQVEVQGRLIAVW 211 >gi|261346654|ref|ZP_05974298.1| repressor LexA [Providencia rustigianii DSM 4541] gi|282565360|gb|EFB70895.1| repressor LexA [Providencia rustigianii DSM 4541] Length = 205 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 65/217 (29%), Gaps = 37/217 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + ++++ + + + P + +A G R P+ Sbjct: 1 MKALTARQQQVYNLVRDHISQTGMPPTRAEIAASLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA + I LL + G G G Sbjct: 44 EEHLKALARKGV------------IEIVSGASRGIRLLLEESNDDIGLPLIGRVAAGEPL 91 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + D + SM + GD+L ++ V+ G ++ + Sbjct: 92 LAEEHIESHYHVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNVHNGQVVVAR 151 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K ++G ++L++ N + V++ Sbjct: 152 I-EDEVTVKRF-KQQGNRVELIAENPEFAPIVVDLRQ 186 >gi|309704840|emb|CBJ04191.1| e14 prophage; repressor protein phage e14 [Escherichia coli ETEC H10407] Length = 224 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H ++ + S A +PT ++ G I K Sbjct: 1 MKTI-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58 Query: 61 ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + K+I L+ G + ++ V Sbjct: 59 CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178 + + + SM+ YR GD++ ++ + GD ++ TG Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + K LI + L +LN +P ++++ + I ++ Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212 >gi|300948726|ref|ZP_07162802.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] gi|300956201|ref|ZP_07168514.1| peptidase S24-like domain protein [Escherichia coli MS 175-1] gi|300974606|ref|ZP_07172667.1| peptidase S24-like domain protein [Escherichia coli MS 45-1] gi|284921949|emb|CBG35025.1| putative prophage repressor [Escherichia coli 042] gi|300316955|gb|EFJ66739.1| peptidase S24-like domain protein [Escherichia coli MS 175-1] gi|300410548|gb|EFJ94086.1| peptidase S24-like domain protein [Escherichia coli MS 45-1] gi|300451791|gb|EFK15411.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] gi|315293024|gb|EFU52376.1| peptidase S24-like domain protein [Escherichia coli MS 153-1] Length = 212 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 21/211 (9%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + I E I + NL L G S ++ G +R+ S S+ KIL Sbjct: 1 MSKQTISERITQRMHALNLKGKDLVNGTGASKGSVSQWMNGGGAPSSRYIS--SLAKILK 58 Query: 64 AT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 N + + K +PLL + S + + Sbjct: 59 VNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSS 105 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRT 177 I S + I + SM G + ++ V G+ +L P+ Sbjct: 106 ITSCVQLVGEIPVNTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKG 165 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 + G I L+ N YP ++ Sbjct: 166 TTTPVIRKLEIEGPDILLVPTNPRYPSIMLD 196 >gi|291612660|ref|YP_003522817.1| phage repressor [Sideroxydans lithotrophicus ES-1] gi|291582772|gb|ADE10430.1| putative phage repressor [Sideroxydans lithotrophicus ES-1] Length = 242 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 52/204 (25%), Gaps = 15/204 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + R A + + + KR + + S E + K N Sbjct: 10 DDIASRLRAFRLRTGKAQDVFALEIEIAYGT---YKRLEAGDKPKSESLEKLRKAGLNIN 66 Query: 67 E--TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----PTGNKWNTVG- 119 + + L D + +L G Sbjct: 67 WLLSGEGEMLLSDQDQHRPYDLGRAPTVLTAGEPDGNYVAIDKYVNVNGSAGPGAEVHEE 126 Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 ++R I + SM P GD ++++++ D + Sbjct: 127 AIVKVRVDLRLLRERIGNNFGKIKIASVSGDSMEPTLSHGDQVLVDTSCSRFIDDAIYAI 186 Query: 175 PRTGDIVAKVLISRRGRSIDLMSL 198 + G + K + + SI + S Sbjct: 187 QQDGHLRFKRIQLKLDGSIVVKSD 210 >gi|21241950|ref|NP_641532.1| LexA repressor [Xanthomonas axonopodis pv. citri str. 306] gi|294625891|ref|ZP_06704505.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|44888106|sp|Q8PN77|LEXA1_XANAC RecName: Full=LexA repressor 1 gi|21107342|gb|AAM36068.1| LexA repressor [Xanthomonas axonopodis pv. citri str. 306] gi|292599801|gb|EFF43924.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 201 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M S ++ + + + ++PS +A+ G R + + + Sbjct: 1 MPSLPPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALADA 52 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++L G +P+L +G P G Sbjct: 53 GLIELLPN-------QKRGIRLPGGAGRDALLALPVLGRVAAG---------LPIGA--- 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +G+ +++++ + Q SM+ GD++ ++ + + G ++ + Sbjct: 94 DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L I L+ N + V Sbjct: 153 D-GEITIKRLER-GAERIRLLPRNRAHAPIVVAAD 185 >gi|261341541|ref|ZP_05969399.1| repressor LexA [Enterobacter cancerogenus ATCC 35316] gi|288316340|gb|EFC55278.1| repressor LexA [Enterobacter cancerogenus ATCC 35316] Length = 202 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVFDLIRDHIGQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLVEEETGIPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIESHYQVDPGMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++ L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNTVQLLPENNEFTPIVVDLRE 183 >gi|149179486|ref|ZP_01858035.1| LexA repressor [Planctomyces maris DSM 8797] gi|148841673|gb|EDL56087.1| LexA repressor [Planctomyces maris DSM 8797] Length = 200 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 12/107 (11%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171 + G K + SM GD +I++ GD + Sbjct: 98 QDDEHIDF--------GSLFDPDDQFCLKVKGVSMIEDQIADGDYVIVHKQNTCKEGDIV 149 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + K S G I L N +++ + + Sbjct: 150 VALVDGQEATLKRYYS-EGDRIRLEPANSSMQPIY--SKNVDILGVV 193 >gi|89901765|ref|YP_524236.1| LexA repressor [Rhodoferax ferrireducens T118] gi|123397057|sp|Q21U48|LEXA_RHOFD RecName: Full=LexA repressor gi|89346502|gb|ABD70705.1| SOS-response transcriptional repressor, LexA [Rhodoferax ferrireducens T118] Length = 224 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 14/213 (6%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + ++I + I P+ L S N ++ Sbjct: 5 PKLTARQQQILDLIQNAITLTGSPPTRAEIATELGFRSANAAEEHLQA---------LAR 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K + + L R+ + + L P G G+ Sbjct: 56 KGAIELVSGTSRGIRLKSEALRSINESRSKQFPLSLPGLSQLMLPLIGRVAAGSPILAQE 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + D K + SM GD+L + S G ++ + Sbjct: 116 HIDQTYYVESSLFQRKPDYLLKVRGMSMRDAGIMDGDLLAVQSTRDAKNGQIVVAR-LGD 174 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K R I+L N Y + VE + Sbjct: 175 EVTVKRF-RRTKDLIELCPENPDYQIIVVEPGE 206 >gi|37676526|ref|NP_936922.1| hypothetical protein VVA0866 [Vibrio vulnificus YJ016] gi|37201068|dbj|BAC96892.1| hypothetical protein [Vibrio vulnificus YJ016] Length = 214 Score = 71.7 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 16/194 (8%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + + LA++ G P+ ++ + +R + + + I A N L + Sbjct: 22 SQAELAQRIGRRPSYISRMLSDPSKTGHRRIADDMVDVITHAFNLPNTWLDTINHHSNLQ 81 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 T +I + S + + A K Sbjct: 82 TGCTIAKINME---ASFKQNGEAEMINSEYLGELYIP------------ASFGVVDVIKV 126 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 + P + G+ ++L+ + GD + + T +++ K L + RG + +N Sbjct: 127 NGEGLFPRIKHGESIVLSRTAEPTPGDDVAIWLKETNELMIKTLTADRGGHYQVFDVNNA 186 Query: 202 YPVDTVEMSDIEWI 215 +T++ DI I Sbjct: 187 SRPETIQKDDIRSI 200 >gi|238754679|ref|ZP_04616032.1| LexA repressor [Yersinia ruckeri ATCC 29473] gi|238707138|gb|EEP99502.1| LexA repressor [Yersinia ruckeri ATCC 29473] Length = 202 Score = 71.7 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ + + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQQVYDLVRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIISGASRGIRLLMEDEEGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPSLFKPNADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 183 >gi|315930558|gb|EFV09597.1| peptidase S24-like family protein [Campylobacter jejuni subsp. jejuni 305] Length = 243 Score = 71.7 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 20/222 (9%) Query: 11 EAIDRMAERHNLTPSGLARKA-----GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 E + ++ + ++ + A+ + R + + ++ K+L Sbjct: 13 EYLSQILKEKKISRAKFAQMLSENGYEITLDGITYWYRSENNQPEDYKNIITMAKVLEVP 72 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + D S + + + +G G S V V E Sbjct: 73 VSKLAPVNDSIKSFLQDDNQINFRYFPDIYASAGLGTSSQSEEVKI------VSVDENFL 126 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGDIV 181 I+ K SM P+ GD +I++ + ++ D ++ + D+ Sbjct: 127 KEILDIPIKKSYDIIKINGDSMEPILSNGDFIIIDRSKNSLETISNADIVIFRKN-DDLF 185 Query: 182 AKVLISRR-GRSIDLMSLNCCYPVDTVEMSDI---EWIARIL 219 K + I L+S N Y V+ S+ E + ++ Sbjct: 186 CKKIKKEPFEDYIFLVSENKKYEDKKVDNSEFEQCEILGAVV 227 >gi|145636699|ref|ZP_01792366.1| LexA repressor [Haemophilus influenzae PittHH] gi|145270225|gb|EDK10161.1| LexA repressor [Haemophilus influenzae PittHH] Length = 191 Score = 71.7 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + + R E + P + ++R+ G E + S + Sbjct: 1 MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +I+ L G G G Sbjct: 54 GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K SM + GD+L ++S V G ++ + Sbjct: 94 AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G I L + N + V + + Sbjct: 154 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 187 >gi|238752157|ref|ZP_04613639.1| LexA repressor [Yersinia rohdei ATCC 43380] gi|238709630|gb|EEQ01866.1| LexA repressor [Yersinia rohdei ATCC 43380] Length = 202 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ + + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEDGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPAMFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 183 >gi|16129108|ref|NP_415663.1| e14 prophage; repressor protein phage e14 [Escherichia coli str. K-12 substr. MG1655] gi|89107991|ref|AP_001771.1| repressor protein phage e14 [Escherichia coli str. K-12 substr. W3110] gi|91212005|ref|YP_541991.1| putative phage repressor [Escherichia coli UTI89] gi|117624884|ref|YP_853797.1| putative phage repressor [Escherichia coli APEC O1] gi|218559636|ref|YP_002392549.1| repressor protein phage e14; e14 prophage [Escherichia coli S88] gi|237706738|ref|ZP_04537219.1| repressor protein phage [Escherichia sp. 3_2_53FAA] gi|256018600|ref|ZP_05432465.1| repressor protein phage e14; e14 prophage [Shigella sp. D9] gi|300823465|ref|ZP_07103595.1| peptidase S24-like domain protein [Escherichia coli MS 119-7] gi|301020180|ref|ZP_07184306.1| peptidase S24-like domain protein [Escherichia coli MS 69-1] gi|331650000|ref|ZP_08351073.1| repressor protein phage e14 [Escherichia coli M605] gi|332279667|ref|ZP_08392080.1| repressor protein phage e14 [Shigella sp. D9] gi|14195551|sp|P75974|YMFK_ECOLI RecName: Full=Putative lambdoid prophage e14 repressor protein C2 gi|1787391|gb|AAC74229.1| e14 prophage; repressor protein phage e14 [Escherichia coli str. K-12 substr. MG1655] gi|4062720|dbj|BAA35971.1| repressor protein phage e14 [Escherichia coli str. K12 substr. W3110] gi|91073579|gb|ABE08460.1| putative phage repressor [Escherichia coli UTI89] gi|115514008|gb|ABJ02083.1| putative phage repressor [Escherichia coli APEC O1] gi|218366405|emb|CAR04157.1| repressor protein phage e14; e14 prophage [Escherichia coli S88] gi|226899778|gb|EEH86037.1| repressor protein phage [Escherichia sp. 3_2_53FAA] gi|260449716|gb|ACX40138.1| peptidase S24 and S26 domain protein [Escherichia coli DH1] gi|294490545|gb|ADE89301.1| peptidase, S-24 domain protein [Escherichia coli IHE3034] gi|300398887|gb|EFJ82425.1| peptidase S24-like domain protein [Escherichia coli MS 69-1] gi|300524083|gb|EFK45152.1| peptidase S24-like domain protein [Escherichia coli MS 119-7] gi|307625781|gb|ADN70085.1| repressor protein phage e14; e14 prophage [Escherichia coli UM146] gi|315135778|dbj|BAJ42937.1| e14 prophage; repressor protein phage e14 [Escherichia coli DH1] gi|315284913|gb|EFU44358.1| peptidase S24-like domain protein [Escherichia coli MS 110-3] gi|323951131|gb|EGB47007.1| peptidase S24 [Escherichia coli H252] gi|331040945|gb|EGI13102.1| repressor protein phage e14 [Escherichia coli M605] gi|332102019|gb|EGJ05365.1| repressor protein phage e14 [Shigella sp. D9] Length = 224 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H ++ + S A +PT ++ G I K Sbjct: 1 MKTI-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58 Query: 61 ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + K+I L+ G + ++ V Sbjct: 59 CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178 + + + SM+ YR GD++ ++ + GD ++ TG Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + K LI + L +LN +P ++++ + I ++ Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212 >gi|85710795|ref|ZP_01041856.1| LexA repressor [Idiomarina baltica OS145] gi|85695199|gb|EAQ33136.1| LexA repressor [Idiomarina baltica OS145] Length = 205 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 35/216 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I + + P + +A + G R+ + E Sbjct: 1 MRPLTPRQAEILELIKDNLQATGMPPTRAEIASRLGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + I + ++E +PL+ +G + Sbjct: 46 HLKALAKKGVIEIMPGMSRGIRLVAEDIEEELGLPLIGQVAAGEPILAQEHIERHYQLDE 105 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 ++ P + + SM + GD+L ++ Q G ++ + Sbjct: 106 SMFYPSAQ-------------FLLRVNGMSMRNIGILDGDLLAVHKTEQARNGQIVVAR- 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K ++GR + L N + V+++ Sbjct: 152 VEDEVTVKRF-EQKGRQVLLHPENEEFSTIVVDLAQ 186 >gi|317485643|ref|ZP_07944517.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6] gi|316923104|gb|EFV44316.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6] Length = 205 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 30/217 (13%) Query: 11 EAIDRMAERH----NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +AI+ + ++ +T L + G ++F + + G P + + ++ Sbjct: 7 KAIEWLNKKAEKAGGIT--NLGKTVGAPASTFFRVLKGGSP-----PGADKLLDWISQLG 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I + ++ +GS V + Sbjct: 60 GKIVFPDERMEGYTLIP-------KVVAQAGAGSSLITSDEVLGMYAFRD--------DF 104 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + SM P+ R D ++++ +++ + + +++ K + Sbjct: 105 LRRVGVHTKESVMLDVIGHSMEPMIRHKDTILVDQSVKELRDGDIFLVGFGEELLVKRVQ 164 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILW 220 R L S N + VE D+E R+ W Sbjct: 165 R-TPRGWLLKSENRDFSDIVVEGPDLETFRVYGRVRW 200 >gi|19549021|ref|NP_599066.1| repressor [Enterobacteria phage SfV] gi|260856753|ref|YP_003230644.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|19483765|gb|AAL89436.1| repressor [Enterobacteria phage SfV] gi|257755402|dbj|BAI26904.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|323155025|gb|EFZ41215.1| peptidase S24-like family protein [Escherichia coli EPECa14] Length = 224 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H ++ + S A +PT ++ G I K Sbjct: 1 MKTV-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58 Query: 61 ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + K+I L+ G + ++ V Sbjct: 59 CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178 + + + SM+ YR GD++ ++ + GD ++ TG Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + K LI + L +LN +P ++++ + I ++ Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212 >gi|78046779|ref|YP_362954.1| LexA repressor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035209|emb|CAJ22854.1| LexA repressor [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 201 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M S ++ + + + ++PS +A+ G R + + + Sbjct: 1 MPSLPPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALADA 52 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++L G +P+L +G P G Sbjct: 53 GLIELLPN-------QKRGIRVPGGAGRDALLALPVLGRVAAG---------LPIGA--- 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +G+ +++++ + Q SM+ GD++ ++ + + G ++ + Sbjct: 94 DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L I L+ N + V Sbjct: 153 D-GEITIKRLER-GAERIRLLPRNRAHAPIVVAAD 185 >gi|59801958|ref|YP_208670.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|240014865|ref|ZP_04721778.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240017310|ref|ZP_04723850.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|240081048|ref|ZP_04725591.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA19] gi|240113258|ref|ZP_04727748.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae MS11] gi|240115331|ref|ZP_04729393.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID18] gi|240118675|ref|ZP_04732737.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240121954|ref|ZP_04734916.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|240124219|ref|ZP_04737175.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID332] gi|240128889|ref|ZP_04741550.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae SK-93-1035] gi|260440172|ref|ZP_05793988.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae DGI2] gi|268597160|ref|ZP_06131327.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599338|ref|ZP_06133505.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268601016|ref|ZP_06135183.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268604387|ref|ZP_06138554.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268682845|ref|ZP_06149707.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268687271|ref|ZP_06154133.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043464|ref|ZP_06569180.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398766|ref|ZP_06642935.1| phage repressor protein [Neisseria gonorrhoeae F62] gi|59718853|gb|AAW90258.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|268550948|gb|EEZ45967.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583469|gb|EEZ48145.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268585147|gb|EEZ49823.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268588518|gb|EEZ53194.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268623129|gb|EEZ55529.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268627555|gb|EEZ59955.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291011927|gb|EFE03916.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610823|gb|EFF39929.1| phage repressor protein [Neisseria gonorrhoeae F62] Length = 251 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 17/218 (7%) Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 E LT LA G+ ++ N S KIL L Sbjct: 26 EELKLTQYKLAEAVGVTQSAVNHYLNGTNALNASIAS--QFAKILQIPVSDFSLRLAEEI 83 Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPEIR----SPHNGIY 131 S +K + L + G+ P++ P++ ++ Sbjct: 84 SSMSIGIDGDKLLALQADNLDTNTITLNLYDVSASCGHGVVNPDYPQLLRSIEIPNDALF 143 Query: 132 AIQTQDTRHKT-----QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + SM P + I ++ + + + + G K L Sbjct: 144 ELLGTNNLTNVQLMPPDGDSMEPTIPQKSITLIKTDVSKFQTGGIYLFTFDGYTYIKRLS 203 Query: 187 SRRGRSIDLMSLNCCYP--VDTVEMSDIE--WIARILW 220 +G +I S N Y + + + I W Sbjct: 204 RGKGGAIHATSDNRHYAKSDFLINPEEADKFHIHGKFW 241 >gi|309776822|ref|ZP_07671796.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53] gi|308915570|gb|EFP61336.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53] Length = 194 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 37/218 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + R NL+ + AG+ ++ + + S + K+ Sbjct: 2 KLSELLTYYRHRDNLSLESVGDYAGVSKSTVKRWESGESS----NVSQARLDKLSELFGI 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + P+L + +G F + + + V Sbjct: 58 DV------------NACLQGNVKPILGYVKAGYDLFANENLL----GYEEV--------- 92 Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 G A Q + Q SM GD++ + S V G ++ ++ K ++ Sbjct: 93 TGKEAAQGDYY-LRVQGDSMTGSRIYDGDLVYVKSCSDVESGAIAVVLLEYNEVTIKKIL 151 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219 + ++ LM+ N +IE I ++L Sbjct: 152 KKEN-TVILMATNPTVEPRVFTRQEIEEGQMQIIGKVL 188 >gi|291513608|emb|CBK62818.1| Predicted transcriptional regulator [Alistipes shahii WAL 8301] Length = 223 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 15/217 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFKILAATNET 68 E + + ++ +T LA++ G+ + + + RNR + + Sbjct: 3 ERVKLIRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDWLETG 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + + +PL P G T + V I P+ Sbjct: 63 KGNMFNAEPDLTAYMHRTDNSLPLQSVPLYSIEGTAGLVPLFTDQA-QSKPVNFIHIPN- 120 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGD---IVA 182 + D SM PL + GDI++ +N GD L+ + Sbjct: 121 ----LPKCDGAIYIVGDSMYPLLKSGDIVLYKQLRDINDIFWGDMYLLSIDIDGEEYVTV 176 Query: 183 KVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + R + L+S N + VE+S I IA + Sbjct: 177 KYIQKSDRAGYVKLVSQNQHHADKDVEISRIRAIALV 213 >gi|85060119|ref|YP_455821.1| LexA repressor [Sodalis glossinidius str. 'morsitans'] gi|123752583|sp|Q2NR09|LEXA_SODGM RecName: Full=LexA repressor gi|84780639|dbj|BAE75416.1| lexA repressor [Sodalis glossinidius str. 'morsitans'] Length = 202 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K++++ I + + P + +A + G R P+ Sbjct: 1 MKALTTRQKEVFDLIRDHITQTGMPPTRAEIASRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGAIEIVSGASRGIRLMIEEESGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ G ++ + Sbjct: 90 ATQHIESHYQVDPALFKPHADFLLRVSGMSMKDIGIMDGDLLAVHKTQDACNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D+ K L + G ++L+ N + V++ Sbjct: 150 D-DDVTVKRLKRQ-GNIVELLPENSEFDPIVVDLRQ 183 >gi|329296557|ref|ZP_08253893.1| LexA repressor [Plautia stali symbiont] Length = 204 Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 38/217 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + ++I++ I + + P + +A + G R P+ Sbjct: 1 MKALTSRQQQIYDLIRDHINQTGMPPTRAEIASQLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA L S G G G Sbjct: 44 EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEASEGLPLIGRVAAGEPL 90 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + + D + SM + GD+L ++ +V G ++ + Sbjct: 91 LAQEHIEAHYQVDANLFKPSADFLLRVSGMSMTDIGIMDGDLLAVHKTQEVRNGQVVVAR 150 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K + + L+ N + V+ + Sbjct: 151 ID-DEVTVKRWKKQGA-IVQLLPENNDFQPIVVDTRE 185 >gi|260596932|ref|YP_003209503.1| 26 kDa repressor protein [Cronobacter turicensis z3032] gi|260216109|emb|CBA28883.1| 26 kDa repressor protein [Cronobacter turicensis z3032] Length = 118 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 5/110 (4%) Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + ++ ++ + SM GD++ ++ + V GD + + Sbjct: 4 IEYVPDQARVIFGNRPESSVKLINVRGDSMEGTIEPGDLIFVDVGVSVFDGDGIYVFNFN 63 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWA-SQ 223 GD+ K L + + I +S N Y T+ ++ R++ + SQ Sbjct: 64 GDMFVKRLQKVKSQLIV-ISDNPRYREWTISEEEMHMFHVAGRVMLSQSQ 112 >gi|239906993|ref|YP_002953734.1| hypothetical protein DMR_23570 [Desulfovibrio magneticus RS-1] gi|239796859|dbj|BAH75848.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 234 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 6/218 (2%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 EA DR+ + + T +A+ + +S + +KR + I+ + Sbjct: 16 EAFDRIKKATGMRTQVEIAKMLDIRQSSISDAKRRQSIPDSWLIKLYQIYNLNPNWILDG 75 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L G KE P + P Sbjct: 76 EMPQFLGEQRGGAFPVKEPVEAYGRKPKHHQMPVYSMTPDNVDQPGLWQERPVEFLSVPD 135 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLIS 187 + ++ M P+ ++G + ++ + L + + KVL Sbjct: 136 QLHRPG-LLVVRMDESDMEPVIQRGAYVGIDRDRKAVRSGMLYALDMPVEGLIIKKVLHD 194 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + L S N + + + + R++W Q Sbjct: 195 AENARLVLRSENTKFTDQLLPAENAADRVVGRVVWVMQ 232 >gi|258440880|ref|ZP_05690715.1| phage repressor protein [Staphylococcus aureus A8115] gi|282894660|ref|ZP_06302887.1| phage repressor [Staphylococcus aureus A8117] gi|257852394|gb|EEV76315.1| phage repressor protein [Staphylococcus aureus A8115] gi|282762937|gb|EFC03070.1| phage repressor [Staphylococcus aureus A8117] gi|319894709|gb|ADV76520.1| phage repressor protein [Staphylococcus phage TEM126] Length = 212 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 73/216 (33%), Gaps = 26/216 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + L+ +ARK + + + E P + KI + N + L Sbjct: 7 IKEIRLNNRLSKVEMARKLDVSEGTIRMWESGRTE-----PRMGMVEKISSLFNVSKGYL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L E E+P +G+ + VP Sbjct: 62 LGEIEEIVLPEFDSEIEVPYFGKVSAGNFEEVAIDN-------EKLKVPPFAFNGRK--- 111 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTGDIVAKVLIS 187 ++ K SM + G +I++ +++ D L+++ G+ K + Sbjct: 112 -PSECIALKINGDSMNKILANGSYIIVHDYRKSCDHKLSSNDILVLR-LGGEYTVKRVRR 169 Query: 188 RRGR-SIDLMSLNCCYPVDTVEM---SDIEWIARIL 219 + +D +S + + ++ ++ +IE I +++ Sbjct: 170 TETKLHLDPVSYSDEFKTNSYDLDSIDEIEVIGKVI 205 >gi|172046707|sp|Q3SIT9|LEXA_THIDA RecName: Full=LexA repressor Length = 200 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 5/118 (4%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 G G G+ E + D K + SM + GD+L ++ Sbjct: 73 GLAVVGQVAAGSPILAQENIERHVQVDTALFSPRADYLLKVRGQSMKDIGILDGDLLAVH 132 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEWIA 216 + + G ++ + ++ K R G ++ L+ N + V++ ++ Sbjct: 133 RSAEARAGQVVVARI-GDEVTVKRFQKR-GHTVQLLPENADFEPIVVDLKRQELVIEG 188 >gi|148609423|ref|YP_001272554.1| Repressor [Phage cdtI] gi|194426862|ref|ZP_03059415.1| repressor protein C2 [Escherichia coli B171] gi|148524752|dbj|BAF63374.1| Repressor [Phage cdtI] gi|194415198|gb|EDX31467.1| repressor protein C2 [Escherichia coli B171] Length = 224 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H ++ + S A +PT ++ G I K Sbjct: 1 MKTV-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58 Query: 61 ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + K+I L+ G + ++ V Sbjct: 59 CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178 + + + SM+ YR GD++ ++ + GD ++ TG Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + K LI + L +LN +P ++++ + I ++ Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212 >gi|114326596|ref|YP_743755.1| putative prophage repressor [Nitrosomonas eutropha C91] gi|114309535|gb|ABI60777.1| UmuD protein. Serine peptidase. MEROPS family S24 [Nitrosomonas eutropha C91] Length = 147 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GDI++++ A++ G ++ G+ K L G + Sbjct: 56 PEATFLMRIKGHSMTMAGIDDGDIVVVDKAVKPEHGKIVIACVD-GEFTCKRLYLLDGET 114 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 L N Y + I + ++ Sbjct: 115 -RLQPANPDYKDIIFKDGQILEVWGVV 140 >gi|323941148|gb|EGB37334.1| peptidase S24 [Escherichia coli E482] Length = 108 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 10 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 69 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 70 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 101 >gi|320191842|gb|EFW66490.1| prophage repressor [Escherichia coli O157:H7 str. EC1212] gi|326347828|gb|EGD71544.1| prophage repressor [Escherichia coli O157:H7 str. 1044] Length = 108 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 10 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 69 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 70 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 101 >gi|265998933|ref|ZP_06111490.1| repressor protein [Brucella ceti M490/95/1] gi|262553669|gb|EEZ09391.1| repressor protein [Brucella ceti M490/95/1] Length = 153 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 55 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 114 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 115 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 146 >gi|257874654|ref|ZP_05654307.1| lambda repressor [Enterococcus casseliflavus EC10] gi|257808818|gb|EEV37640.1| lambda repressor [Enterococcus casseliflavus EC10] Length = 149 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 51 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 110 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 111 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 142 >gi|256160568|ref|ZP_05458243.1| Repressor protein CI from prophage [Brucella ceti M490/95/1] Length = 153 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 55 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 114 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 115 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 146 >gi|253730853|ref|ZP_04865018.1| possible heat-sensitive lambda citS857 repressor protein/VP16 fusion protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725410|gb|EES94139.1| possible heat-sensitive lambda citS857 repressor protein/VP16 fusion protein [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 150 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 52 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 111 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 112 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 143 >gi|224438775|ref|ZP_03659638.1| Repressor protein CI from prophage [Helicobacter cinaedi CCUG 18818] Length = 108 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 10 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 69 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 70 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 101 >gi|26247415|ref|NP_753455.1| repressor protein [Escherichia coli CFT073] gi|26107816|gb|AAN80015.1|AE016759_289 Repressor protein [Escherichia coli CFT073] Length = 140 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 42 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 101 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 102 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 133 >gi|9633419|ref|NP_050522.1| similar to CI repressor [Enterobacteria phage VT2-Sakai] gi|5881615|dbj|BAA84306.1| cI [Enterobacteria phage VT2-Sakai] Length = 169 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 71 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 130 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 131 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 162 >gi|18158895|pdb|1KCA|A Chain A, Crystal Structure Of The Lambda Repressor C-Terminal Domain Octamer gi|18158896|pdb|1KCA|B Chain B, Crystal Structure Of The Lambda Repressor C-Terminal Domain Octamer gi|18158897|pdb|1KCA|C Chain C, Crystal Structure Of The Lambda Repressor C-Terminal Domain Octamer gi|18158898|pdb|1KCA|D Chain D, Crystal Structure Of The Lambda Repressor C-Terminal Domain Octamer gi|18158899|pdb|1KCA|E Chain E, Crystal Structure Of The Lambda Repressor C-Terminal Domain Octamer gi|18158900|pdb|1KCA|F Chain F, Crystal Structure Of The Lambda Repressor C-Terminal Domain Octamer gi|18158901|pdb|1KCA|G Chain G, Crystal Structure Of The Lambda Repressor C-Terminal Domain Octamer gi|18158902|pdb|1KCA|H Chain H, Crystal Structure Of The Lambda Repressor C-Terminal Domain Octamer Length = 109 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 11 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 70 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 71 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 102 >gi|323940227|gb|EGB36420.1| peptidase S24 [Escherichia coli E482] Length = 127 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 3/104 (2%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G E + D + SM + GD+L ++ V Sbjct: 7 VAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRN 66 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G ++ + ++ K L + G ++L+ N + V++ Sbjct: 67 GQVVVARID-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 108 >gi|218703074|ref|YP_002410703.1| repressor protein phage e14; e14 prophage [Escherichia coli IAI39] gi|218373060|emb|CAR20950.1| repressor protein phage e14; e14 prophage [Escherichia coli IAI39] gi|294490166|gb|ADE88922.1| peptidase, S-24 domain protein [Escherichia coli IHE3034] Length = 224 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 13/222 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H ++ + S A +PT ++ G I K Sbjct: 1 MKTV-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58 Query: 61 ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + K+I L+ G + ++ V Sbjct: 59 CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178 + + + SM+ YR GD++ ++ + GD ++ +G Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDSG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + K LI + L +LN +P ++++ + I ++ Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212 >gi|119510068|ref|ZP_01629208.1| SOS function regulatory protein, LexA repressor [Nodularia spumigena CCY9414] gi|119465255|gb|EAW46152.1| SOS function regulatory protein, LexA repressor [Nodularia spumigena CCY9414] Length = 200 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 50/190 (26%), Gaps = 8/190 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I+ PS + + + + Q + E + + Sbjct: 8 QQQLYDWLVEYIKIHQYSPSIRQMMEAMKLKSPAPIQSRLEHLRTKGYIDWNEGKARTIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSM-LPLYR 152 G G G + + + ++ Q + SM L Sbjct: 68 ILHPVKQGIPILGTIAAGGLIE--PFTDAIDHLDFSHVSLPPQSYGLRVAGDSMIEDLIA 125 Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD++ L+ ++ G + + K + G + L N Y V Sbjct: 126 DGDLVFLHPVLEPDQLKNGTIVAARVDGYGTTLKRFYRQ-GDRVTLKPANSKYKPIEVLA 184 Query: 210 SDIEWIARIL 219 + ++ ++ Sbjct: 185 TQVQVQGSLV 194 >gi|300779104|ref|ZP_07088962.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504614|gb|EFK35754.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 258 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 21/226 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ FS + I + + N+T LA L + + + E P E + + Sbjct: 1 MSKFS-----DNIVFLRGKKNMTQQELADLLFLTRSRYVAYEYGRTE-----PPIEILLR 50 Query: 61 ILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--N 113 I N +I + + + +P+ + G N Sbjct: 51 ISKFYNISIDLLLTVDVRKFSIDELMELPENRIVLPIKVDQDGNNQIEIIPQKASMGYLN 110 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170 + E + + + SM P Y+ G ++ + + + Sbjct: 111 GYGDPEYIESLETISLPFLKGGKFRAFPADGDSM-PPYKNGTYIVGKYVENLSDLKTDRT 169 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + I K I + + N Y + + +I+ I Sbjct: 170 YVFITTNDGISYKRFQFHEADGIWVKADNQFYEPYKIPLPEIKEIW 215 >gi|86158126|ref|YP_464911.1| SOS-response transcriptional repressor LexA [Anaeromyxobacter dehalogenans 2CP-C] gi|123736646|sp|Q2IIJ0|LEXA_ANADE RecName: Full=LexA repressor gi|85774637|gb|ABC81474.1| SOS-response transcriptional repressor, LexA [Anaeromyxobacter dehalogenans 2CP-C] Length = 229 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 61/230 (26%), Gaps = 19/230 (8%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKSKRFGIEGR--NRWP 53 M + ++ I E H P+ + + T+ N + +R P Sbjct: 1 MEGLTDRQLEVLRFIASQIEDHGYPPTIREIGEALDIRSTNGVNDHLKALERKGYLSRDP 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +A E + + + + + P + Sbjct: 61 VKSRALIPTSAAREALGGGGEAGSNVVPLVRGPARPGSRMIEIPIVGRVAAGMPILAQER 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLL 172 +TV V + + + Q SM+ GD + + + + G+ ++ Sbjct: 121 VEDTVQVDA------FLLGTNKKVYGLRVQGDSMIGDGILPGDYVFVKKQLNADDGEIVV 174 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 + K + G + N V SD + ++ Sbjct: 175 AMID-DEATVKRVYF-EGDRVRFQPSNPRMAPIYVRHSDFRSTMILGVVV 222 >gi|87303597|ref|ZP_01086376.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 5701] gi|87281821|gb|EAQ73785.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 5701] Length = 153 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 14/146 (9%) Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139 G + FP+ + V + + + Sbjct: 11 FSEPFTPLPLRERRRALLLPLAGDSVAAGFPSPA-DDYVE--TGIDLNEQLIRHPSSTFF 67 Query: 140 HKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 + SM+ GD+LI++ +++ G R+++ G K L+ + L + Sbjct: 68 LRVSGDSMIGAGIHHGDLLIVDRSVEPRHG-RVVVAAVEGAFTLKRLVRH-QGRLRLEAA 125 Query: 199 NCCYPVDTVEMSD--------IEWIA 216 + YP + +D I I Sbjct: 126 HPAYPPLELSDADDTRLWGVAIHVIH 151 >gi|270635221|ref|ZP_06222072.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] gi|270317432|gb|EFA28935.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] Length = 107 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 SM P+ G + ++ + ++ G + K+L + + Sbjct: 16 ENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVK 75 Query: 195 LMSLN-CCYPVDTVEMSDIEWIARILWAS 222 + S N +P + E+ DI + ++ W S Sbjct: 76 IRSYNTEEHPDEIAELQDISVLGKVFWYS 104 >gi|27383436|ref|NP_774966.1| MucA [Citrobacter freundii] gi|216967817|ref|YP_002333325.1| MucA [Klebsiella pneumoniae] gi|27261289|gb|AAN87630.1| MucA [Citrobacter freundii] gi|215397989|gb|ACJ65266.1| MucA [Klebsiella pneumoniae] gi|323700911|gb|ADY00064.1| translesion synthesis protein A [Escherichia coli] Length = 144 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + SM GD+L+++ A + G ++ + K L Sbjct: 43 HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R LM LN +P + ++ + Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132 >gi|332360920|gb|EGJ38725.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 257 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + L+R+ G+ ++ + P ++ KI Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--------FFDSGVFPTGNKWNTVGV 120 + ++ ++ + G K + Sbjct: 74 VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQGKGLKLLEASLTEQETHASLKDDYFPY 133 Query: 121 ------------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 PE I D + S+ P Y D + L Sbjct: 134 LVYENYYLSQHKPEQADLVWLDREID-YDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPTG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|124026385|ref|YP_001015500.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. NATL1A] gi|123961453|gb|ABM76236.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. NATL1A] Length = 202 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 50/192 (26%), Gaps = 8/192 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 IE + PS + + + + Q + +E + L Sbjct: 10 QQELYDWLVDFIEDHHHSPSIRQMMQAMGLRSPAPIQSRLRHLQQKGWIKWQEGQARTLQ 69 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G T + N + ++ SM+ Sbjct: 70 LIEESISGVPVLGAIAAGGLVETFDDVQETLDLNSVLQLKG-LFALTVNGDSMIDSFIAD 128 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++++ + G + K G + L + N Y ++ Sbjct: 129 GDMVLMEPVNEPARLRNGTIVSAMVPGLGTTLKHFFRD-GSLVRLEAANTSYDPIEIDAE 187 Query: 211 DIEWIARI--LW 220 + ++ +W Sbjct: 188 QVHIQGKLAAVW 199 >gi|315633588|ref|ZP_07888878.1| LexA repressor [Aggregatibacter segnis ATCC 33393] gi|315477630|gb|EFU68372.1| LexA repressor [Aggregatibacter segnis ATCC 33393] Length = 207 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 35/224 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + +++++ + E + P+ +A + + +++ Sbjct: 1 MKPLTARQQEVYDFLKHHLETTGMPPT----RAEISK------ELGFRSPNAAEEHLKAL 50 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K + LL G G G Sbjct: 51 AK---------------KGVIEIVSGTSRGIRLLLEDNGQEEPGLPLIGRVAAGEPILAE 95 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + D K SM + GD+L ++S V G ++ + Sbjct: 96 QHIEGTYHVDPTMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQVVVARI-E 154 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216 ++ K L + G ++ L + N + V+++ +IE IA Sbjct: 155 DEVTVKRLERK-GSTVYLHAENEEFAPIVVDLTQPTQFEIEGIA 197 >gi|238854759|ref|ZP_04645089.1| repressor LexA [Lactobacillus jensenii 269-3] gi|260663991|ref|ZP_05864844.1| LexA repressor [Lactobacillus jensenii SJ-7A-US] gi|282932850|ref|ZP_06338247.1| repressor LexA [Lactobacillus jensenii 208-1] gi|313472279|ref|ZP_07812771.1| repressor LexA [Lactobacillus jensenii 1153] gi|238832549|gb|EEQ24856.1| repressor LexA [Lactobacillus jensenii 269-3] gi|260561877|gb|EEX27846.1| LexA repressor [Lactobacillus jensenii SJ-7A-US] gi|281302885|gb|EFA95090.1| repressor LexA [Lactobacillus jensenii 208-1] gi|313449108|gb|EFR61341.1| repressor LexA [Lactobacillus jensenii 1153] Length = 211 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 62/217 (28%), Gaps = 27/217 (12%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI E I E P+ + L TS + +++ Sbjct: 11 KILEFIYDTVEDRGFPPTVREICEAVNLSSTSTVH---------------GHLNRLVKTG 55 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + P + + + + G D+ + V PE Sbjct: 56 YLYKDPSKPRALEITQEGLNALGVDPGIPYLGTVAAGDPDTALADDSGAEYYVERPERFD 115 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + +Y + SM D++I+ GD ++ K Sbjct: 116 KRDPLY-------MLRVDGMSMIERGIYPDDLVIVRHQNVAAQGDLVIAYTENNGTTLKE 168 Query: 185 LISR-RGRSIDLMSLNCC-YPVDTVEMSDIEWIARIL 219 L+ + + + L + N YP + + ++ + +++ Sbjct: 169 LVRDHKSKRLRLKAYNKEMYPDELLPDTNFKICGKVV 205 >gi|313115948|ref|ZP_07801375.1| peptidase S24-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621712|gb|EFQ05240.1| peptidase S24-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 275 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 26/253 (10%), Positives = 58/253 (22%), Gaps = 46/253 (18%) Query: 7 KKIWEAIDRMAERHNLTPSGLARK-----AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + + +R+ + + + +K ++ PS + I Sbjct: 28 NEVGQILAGTRKRNGYSLVAFSELLRHYGVDVSDKGISKWEKGYTT-----PSIYQLVAI 82 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 A N + + + + + + +P Sbjct: 83 CHALNIKEGPSYFTKAFQKPALLNDIGQKKVAEYEMDLIASRRYQPDTEEPAEIDYIMMP 142 Query: 122 EIRSPHNGIYAIQ------------------TQDTRHKTQDTSMLPLYRKGDILILNSAI 163 P + + SM P Y G I+ + Sbjct: 143 VSELPVSAGLGAFLEGEMFQQIQVPASSVPAGAEFGIYVSGDSMEPRYHSGQIVWVKRCE 202 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRS----------------IDLMSLNCCYPVDTV 207 ++ CGD + K L+SLN Y + Sbjct: 203 ELECGDIGIFVYDDCG-YLKKYDEHTPDKSQAEFLTDSYGVVHNQPVLVSLNTKYSPILI 261 Query: 208 EMSD-IEWIARIL 219 E + ++L Sbjct: 262 SPEQRFEIVGKVL 274 >gi|254496193|ref|ZP_05109088.1| phage repressor [Legionella drancourtii LLAP12] gi|254354585|gb|EET13225.1| phage repressor [Legionella drancourtii LLAP12] Length = 220 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 14/222 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++I I + + +T LA + L P + ++ R P + Sbjct: 1 MDIREQIGNRITKARKELGITIKELAARTVTLSPARISNWEQCT-----RSPGPLEAKLL 55 Query: 62 LAATNETICQLLDLPFSDGRT--TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + LL L + + K + + + + Sbjct: 56 AEQLGVSASYLLCLTDNPQGDLIQNPENKFRHIPILNTKEALHAREILGQQEPFIFEKTI 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTG 178 + + +P A+ D+SM P GD+++++ +Q N G + + + Sbjct: 116 LVDSLNPSIKSLAL----FATSVDDSSMQPELTPGDVVVIDGDLQPNPGHYVLVYLTQKK 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 V + G L++ + + ++ + + + I ++ Sbjct: 172 QTVLRRYGEADGYHFQLLASSDLWATVSIKDAQEAQIIGVVV 213 >gi|325579221|ref|ZP_08149177.1| LexA repressor [Haemophilus parainfluenzae ATCC 33392] gi|325159456|gb|EGC71590.1| LexA repressor [Haemophilus parainfluenzae ATCC 33392] Length = 208 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 62/216 (28%), Gaps = 33/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ E + R E + P + ++R+ G + ++ R + E Sbjct: 1 MRPLTARQQEVLELLKRHLETTGMPPTRAEISRELGFKSP---NAAEEHLKALARKGAIE 57 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + I G G G Sbjct: 58 IVA-----------------------GASRGIRIVDDSANDEEEEGLPLIGRVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K SM + GD+L ++S V G ++ + Sbjct: 95 AEQHIEGTYRVDANMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQIVVARI 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G I L + N + V + + Sbjct: 155 -EDEVTVKRLERK-GSVIYLHAENEEFQPIVVNLEE 188 >gi|303246530|ref|ZP_07332809.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio fructosovorans JJ] gi|302492240|gb|EFL52115.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio fructosovorans JJ] Length = 140 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM GDIL+++ A++ G ++ Sbjct: 31 AEDYID--KKLDLNEQLVRHPAATFFVRVDGDSMRDAGVASGDILVVDRAVEPRDGHIVI 88 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + + L+ N Y V + ++ Sbjct: 89 AALD-GELTVKRLRRK-NGQVLLVPENPDYAPVAVGPEASFEVWGVV 133 >gi|238801225|gb|ACR56332.1| MucA [Enterobacter cloacae] Length = 136 Score = 71.3 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + SM GD+L+++ A + G ++ + K L Sbjct: 43 HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R LM LN +P + ++ + Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132 >gi|255022991|ref|ZP_05294977.1| LexA repressor [Listeria monocytogenes FSL J1-208] Length = 166 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 54/186 (29%), Gaps = 32/186 (17%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60 + I+E I + PS + GL +S +EG+ R P+ + Sbjct: 7 QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + E E P + P + N + Sbjct: 67 IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIDEYFPL 106 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE + A +T + SM+ GD +I+ G+ ++ + Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160 Query: 180 IVAKVL 185 K Sbjct: 161 ATCKRF 166 >gi|78185048|ref|YP_377483.1| peptidase S24, LexA repressor [Synechococcus sp. CC9902] gi|78169342|gb|ABB26439.1| Peptidase S24, LexA repressor [Synechococcus sp. CC9902] Length = 207 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 8/191 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 I PS + + L + +L L T ++ + Sbjct: 13 QQELYDWLSDYIGTHRHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 72 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151 L + S G G G +T + + + SM+ Sbjct: 73 LLGDVAASVGIPVLGAVAAGGLVDTFDDVQDHLDLAPVLETRG-LFALTVNGDSMVDAHI 131 Query: 152 RKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 GD++++ + G + K + ++ L + N Y + Sbjct: 132 ADGDVVLMEPVVDPQRLRDGTVVSALVAGSGTTLKHFHRQGP-TVVLEAANPAYSPIELP 190 Query: 209 MSDIEWIARIL 219 ++ +++ Sbjct: 191 AEQVQVQGKLV 201 >gi|284006472|emb|CBA71732.1| LexA repressor [Arsenophonus nasoniae] Length = 213 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 3/115 (2%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 + G G G E + + D + SM + G Sbjct: 80 EENEDEGLPLIGRVAAGEPLLAQEHIESHYRIDATIFRPSADFLLRVNGMSMKNIGIIDG 139 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+L ++ QV+ G ++ + ++ K + G ++L++ N + V++ Sbjct: 140 DLLAVHKTQQVHNGQIVVARID-DEVTVKRF-KQAGSKVELIAENPEFEPIIVDL 192 >gi|254284026|ref|ZP_04958994.1| LexA repressor [gamma proteobacterium NOR51-B] gi|219680229|gb|EED36578.1| LexA repressor [gamma proteobacterium NOR51-B] Length = 197 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 4/176 (2%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R IE P+ I +I+ + + + E + Sbjct: 7 QQQVLDIIRSNIEDTGFPPTRADIAQIMGFKSANAAEEHLKALAKKGAIEMIPGTSRGIR 66 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G G E G + + D Q SM+ + Sbjct: 67 LT--GQKGIPIVGRVAAGEPVLAQEHVEEHCELPGSFFSPSADYLLNVQGDSMVDVGIYD 124 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD+L ++S ++ + ++ K + + L+ N Y V + Sbjct: 125 GDLLAVHSTPVAADNQIVVARID-DEVTVKRFKRTSKQIVTLLPENSLYQPIVVNL 179 >gi|204931364|ref|ZP_03222063.1| protein UmuD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204319847|gb|EDZ05056.1| protein UmuD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 139 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + + L P + FP+ + + + + + + + K Sbjct: 1 MEFFRPTELCEIIPLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAT 57 Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM GD+L+++S+ + GD ++ G+ K L R ++ L+ +N Y Sbjct: 58 GDSMIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRLQLRP--TVQLIPMNSAY 114 Query: 203 PVDTVEMSD-IEWIARI 218 V D ++ + Sbjct: 115 RPIPVGSEDTLDIFGVV 131 >gi|260583118|ref|ZP_05850899.1| conserved hypothetical protein [Haemophilus influenzae NT127] gi|260093830|gb|EEW77737.1| conserved hypothetical protein [Haemophilus influenzae NT127] Length = 256 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 70/257 (27%), Gaps = 49/257 (19%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ E + R NLT + LA G + + + + + R +I + Sbjct: 1 MTTL-----AERLKRTLLERNLTQNDLAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK---------------------------EKEIPLL 93 I A L + + + K+ L Sbjct: 50 IANALGVDPNWLRNGGDMIVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLHKQQVSL 109 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQD 144 P+ F P + + Sbjct: 110 KTKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFN 169 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-P 203 SM P+ K D++ +++ + G+ + + ++ + L ++ ++ N Sbjct: 170 ESMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGS 229 Query: 204 VDTV-EMSDIEWIARIL 219 + ++S + + R + Sbjct: 230 SFEIDDLSRLNVLGRCV 246 >gi|218133889|ref|ZP_03462693.1| hypothetical protein BACPEC_01778 [Bacteroides pectinophilus ATCC 43243] gi|217991264|gb|EEC57270.1| hypothetical protein BACPEC_01778 [Bacteroides pectinophilus ATCC 43243] Length = 199 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 37/213 (17%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I+ ++ +PS +A G+ + K + ++ Sbjct: 11 EIKKYIEDYYLQNRQSPSTTKIAEAVGIARGTAYKY----------------LVEMAEKN 54 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + ++ + + S + N V +P Sbjct: 55 MIEYDGQEIRTNVTRKYSGEQTQTPIV-------GSIPCGSPQYEEENIEEYVSLPTAIF 107 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + SM GD++++ ++ N GD ++ K Sbjct: 108 G-------KGDFFILRASGQSMIEAGIDDGDLVVVKKQVEANDGDIVVALVD-NQNTLKR 159 Query: 185 LIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + I L N V + Sbjct: 160 YFRDDENKKIILHPENKKMKDIIV--DECCIQG 190 >gi|256855230|ref|ZP_05560588.1| temperature-sensitive lambda-repressor [Enterococcus faecalis T8] gi|256709444|gb|EEU24494.1| temperature-sensitive lambda-repressor [Enterococcus faecalis T8] Length = 169 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 71 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 130 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 131 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 162 >gi|153821431|ref|ZP_01974098.1| protein UmuD [Vibrio cholerae B33] gi|229509132|ref|ZP_04398619.1| error-prone repair protein UmuD [Vibrio cholerae B33] gi|229608804|ref|YP_002879452.1| error-prone repair protein UmuD [Vibrio cholerae MJ-1236] gi|254850921|ref|ZP_05240271.1| SOS mutagenesis and repair protein UmuD [Vibrio cholerae MO10] gi|255743722|ref|ZP_05417680.1| error-prone repair protein UmuD [Vibrio cholera CIRS 101] gi|17017486|gb|AAK64594.1| RumA [Vibrio cholerae MO10] gi|21885340|gb|AAL59746.1| UV repair [Vibrio cholerae] gi|32469330|dbj|BAC79073.1| UV repair [Vibrio cholerae] gi|126521031|gb|EAZ78254.1| protein UmuD [Vibrio cholerae B33] gi|194687002|dbj|BAG66137.1| UV repair protein, RumA [Vibrio cholerae O1 biovar El tor] gi|229353889|gb|EEO18824.1| error-prone repair protein UmuD [Vibrio cholerae B33] gi|229371459|gb|ACQ61882.1| error-prone repair protein UmuD [Vibrio cholerae MJ-1236] gi|238815147|gb|ACR56736.1| UV repair protein [Escherichia coli] gi|254846626|gb|EET25040.1| SOS mutagenesis and repair protein UmuD [Vibrio cholerae MO10] gi|255738583|gb|EET93970.1| error-prone repair protein UmuD [Vibrio cholera CIRS 101] gi|259156259|gb|ACV96206.1| protein UmuD [Vibrio cholerae Ban5] gi|259156355|gb|ACV96301.1| protein UmuD [Vibrio cholerae Ind4] gi|259156441|gb|ACV96386.1| protein UmuD [Vibrio cholerae Ind5] gi|259156578|gb|ACV96521.1| protein UmuD [Vibrio fluvialis Ind1] gi|270124431|dbj|BAI52787.1| RumA, UV repair DNA polymerase [Vibrio cholerae O1 biovar El Tor] Length = 149 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + SM+ DIL+++ ++Q GD ++ Sbjct: 39 DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G++ K L R + L+ N Y + +++E + Sbjct: 96 GIHGELTVKELQLRP--CVKLIPRNQAYEPIHIPEGAELEIFGVV 138 >gi|170752098|ref|YP_001758358.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658620|gb|ACB27675.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 239 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 65/217 (29%), Gaps = 17/217 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + ER LT LA AG + + R + E ++ A Sbjct: 1 MSALKQFRERARLTQQELADAAGTSQPQIRRLEAGE-----RKLTKEWAERLAPALGINA 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL P + + G +G F T + + E Sbjct: 56 ETLLFPPANLNEPEGDDGPGWTIDGEAGLDVPGEVAAGRFLTVDTAVDETIYERAPVVPD 115 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILIL----NSAIQVNCGDRLLIKPRTG-----DI 180 + + TS+ + GDIL S Q GD ++++ + Sbjct: 116 SRYPRKAQYGLVVRGTSINQIAIDGDILHCVDIGISGHQPQNGDLVIVEQIQFGGHLRER 175 Query: 181 VAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEW 214 AKV G S++L + V ++EW Sbjct: 176 TAKVYRVAEGGSVELHPDSDDPRWQEPIHVPRRELEW 212 >gi|9955121|pdb|1F39|A Chain A, Crystal Structure Of The Lambda Repressor C-Terminal Domain gi|9955122|pdb|1F39|B Chain B, Crystal Structure Of The Lambda Repressor C-Terminal Domain Length = 101 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM P + G +++++ V GD + + + K LI Sbjct: 3 ASAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 62 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 63 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 94 >gi|301155562|emb|CBW15030.1| DNA-binding transcriptional repressor of SOS regulon [Haemophilus parainfluenzae T3T1] Length = 208 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 33/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ E + R E + P + ++R+ G + ++ R + E Sbjct: 1 MRPLTARQQEVLELLKRHLETTGMPPTRAEISRELGFKSP---NAAEEHLKALARKGAIE 57 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + D G G G Sbjct: 58 IVAGASRGIRIIDDSANDEEEE-----------------------GLPLIGRVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K SM + GD+L ++S V G ++ + Sbjct: 95 AEQHIEGTYRVDANMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQIVVARI 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G I L + N + V + + Sbjct: 155 -EDEVTVKRLERK-GSVIYLHAENEEFQPIVVNLEE 188 >gi|323181266|gb|EFZ66764.1| peptidase S24-like family protein [Escherichia coli 1357] Length = 212 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 21/211 (9%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + I E I + NL L G S ++ G +R+ S S+ KIL Sbjct: 1 MSKQTISERITQRMHALNLKGKDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILK 58 Query: 64 AT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 N + + K +PLL + S + + Sbjct: 59 VNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSS 105 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRT 177 I S + I + SM G + ++ V G+ +L P+ Sbjct: 106 ITSCVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKG 165 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 + G I L+ N YP ++ Sbjct: 166 TTTPVIRNLEIEGPDILLVPTNPRYPSIMLD 196 >gi|213970585|ref|ZP_03398712.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv. tomato T1] gi|213924756|gb|EEB58324.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv. tomato T1] Length = 218 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 4/193 (2%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 S LA G ++ + + + ++ A + L L D + + Sbjct: 13 QSRLAEMLGKPQNLLSRYLSSPEKAGAKTIGEDFAREVEKAFDLPRYALDILEAPDDQVS 72 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 E+ P+ + W + + + + + Sbjct: 73 ASNNFEVGPPITSPTRRIAIVGTAQLGPDGYWAGLDTTDGWVETW---SRDEDAYALRLK 129 Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 SM P R G + + + ++ G+ +++K G + K L+ + LMS+N Y Sbjct: 130 GDSMAPAIRSGWVAVCEPSHRLVPGEYVMVKLCDGQSMVKELLFETEDGVSLMSVNSAYG 189 Query: 204 VD-TVEMSDIEWI 215 T+ SDIE I Sbjct: 190 ERTTLSWSDIERI 202 >gi|77543205|gb|ABA87017.1| RumA [Vibrio cholerae] gi|259156489|gb|ACV96433.1| protein UmuD [Vibrio cholerae Mex1] Length = 149 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + SM+ DIL+++ ++Q GD ++ Sbjct: 39 DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G++ K L R + L+ N Y + +++E + Sbjct: 96 GIHGELTVKELQLRP--CVMLIPRNQAYEPIHIPEGTELEIFGVV 138 >gi|33865578|ref|NP_897137.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 8102] gi|33632747|emb|CAE07559.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 8102] Length = 143 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V V ++ + T + SML GD+L+++ ++ G ++ Sbjct: 34 ADDYVEV--GIDLNDQLIRHPTSTFFLRVSGESMLGAGIHDGDLLVVDRSLDPRPGRVVV 91 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G+ K L+ + + L + N YP + D++ Sbjct: 92 AVLD-GEFTLKRLV-QHHGRLRLEAANPAYPPLELHRCGDVQI 132 >gi|302188082|ref|ZP_07264755.1| putative UV resistance protein [Pseudomonas syringae pv. syringae 642] Length = 143 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 5/107 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + P + A +T+ SM P G L+++ A G+ ++ Sbjct: 35 DHYEAPISLDDLVDLRA--PHVWLGETEGDSMSPAGILNGTKLVIDRARTPQVGNVVVAY 92 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 V K L + L S N YP + +IE + W+ Sbjct: 93 ID-NQPVVKRLDRQLNGGWMLSSDNPKYPPIQ-GLEEIEVFGVVTWS 137 >gi|255010704|ref|ZP_05282830.1| hypothetical protein Bfra3_16308 [Bacteroides fragilis 3_1_12] gi|313148511|ref|ZP_07810704.1| predicted protein [Bacteroides fragilis 3_1_12] gi|313137278|gb|EFR54638.1| predicted protein [Bacteroides fragilis 3_1_12] Length = 228 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 63/221 (28%), Gaps = 8/221 (3%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILA 63 + ++ I + ER PS A+ G + + + Sbjct: 4 KNTEVSARIAAIIERVGENPSSFAKSLGYSRAQTIYDILSGKSA--PSYDFFKRFANTGF 61 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPE 122 + N + L + E E P+ G G V E Sbjct: 62 SANINLQWLFTGNGDMFKKEEAIADERPVASLATQPGKGIPLIPIEAMAGALTGEQTVLE 121 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGD 179 + + D + +SM P Y GDI+ + +++ + Sbjct: 122 YECERYVVPVFKGADFLIPVKGSSMYPKYSSGDIVACQRVPMSDLFFQWNKVYVIDTNQG 181 Query: 180 IVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K + + ++S N Y + +S I +A ++ Sbjct: 182 ALIKRIKPGSDKEHVLIVSDNEKYDPFELPISSIHAVALVI 222 >gi|218282466|ref|ZP_03488725.1| hypothetical protein EUBIFOR_01307 [Eubacterium biforme DSM 3989] gi|218216562|gb|EEC90100.1| hypothetical protein EUBIFOR_01307 [Eubacterium biforme DSM 3989] Length = 196 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 71/209 (33%), Gaps = 36/209 (17%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 +N+ A++ G+ ++ + + ++ K+ + + Sbjct: 13 ENNIKHDEAAKRIGIGRATYFRWLKGEST----HLKANTLKKLSDMLDCDVK-------- 60 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 +++++ P++ +G G FP + + + + Sbjct: 61 --SILDEEDRIKPIVGSVKAGYDG------FPMEDIEGYIELNRHDGKKGDYF------- 105 Query: 139 RHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 + + SM+ +GD++ + +V G ++ + K ++ ++G I L + Sbjct: 106 -LRVRGDSMINAHIYEGDLVFVKQTNEVESGSIAIVL-VGEEATLKRVLYKKGLMI-LEA 162 Query: 198 LNCCYPVDTVEMSDIE-----WIARILWA 221 N ++E I ++L+A Sbjct: 163 ANPKIDTKVFTPEEVEELPVKVIGKVLYA 191 >gi|219882924|ref|YP_002478088.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus A6] gi|219861930|gb|ACL42271.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus A6] Length = 143 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 4/85 (4%) Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 + SM GD L+++ AI G+ ++ G++ K L + Sbjct: 54 STFLVRVSGHSMEGAGISDGDELVVDRAITPVDGNVVVAIVD-GELTIKRL-RLEHGRVR 111 Query: 195 LMSLNCCYPVDTVE-MSDIEWIARI 218 L + N YP V ++++ + Sbjct: 112 LAAENPDYPDLVVPELAELSIWGTV 136 >gi|238764118|ref|ZP_04625072.1| LexA repressor [Yersinia kristensenii ATCC 33638] gi|238798487|ref|ZP_04641966.1| LexA repressor [Yersinia mollaretii ATCC 43969] gi|238697655|gb|EEP90418.1| LexA repressor [Yersinia kristensenii ATCC 33638] gi|238717649|gb|EEQ09486.1| LexA repressor [Yersinia mollaretii ATCC 43969] Length = 202 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ + + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEDGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 183 >gi|123444033|ref|YP_001008003.1| LexA repressor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238760283|ref|ZP_04621426.1| LexA repressor [Yersinia aldovae ATCC 35236] gi|238782916|ref|ZP_04626944.1| LexA repressor [Yersinia bercovieri ATCC 43970] gi|332163195|ref|YP_004299772.1| LexA repressor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166224656|sp|A1JRT9|LEXA_YERE8 RecName: Full=LexA repressor gi|122090994|emb|CAL13877.1| LexA repressor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238701485|gb|EEP94059.1| LexA repressor [Yersinia aldovae ATCC 35236] gi|238716119|gb|EEQ08103.1| LexA repressor [Yersinia bercovieri ATCC 43970] gi|318603920|emb|CBY25418.1| SOS-response repressor and protease LexA [Yersinia enterocolitica subsp. palearctica Y11] gi|325667425|gb|ADZ44069.1| LexA repressor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 202 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ + + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEDGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 183 >gi|319946970|ref|ZP_08021204.1| phage transcriptional repressor [Streptococcus australis ATCC 700641] gi|319747018|gb|EFV99277.1| phage transcriptional repressor [Streptococcus australis ATCC 700641] Length = 253 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 24/228 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + N L+R G+ ++ + P +E++ KI + Sbjct: 22 ISEKIRELLKVQNKKQVDLSRTTGIPASTLTGYVKGTS-----LPVSENLEKIASFFEIP 76 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP--------------SGSGGFFDSGVFPTGNK 114 I L + K + I + + Sbjct: 77 ISDLDPRYGQPDTLEDSKIEFIYKQLDEDFQDSLLEEANRLLVLQAERKRIEKKYTPYTV 136 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDT--RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 +++ + S + ++ Q S+ P Y KG + ++ G + Sbjct: 137 FDSYAASQSASKGDLVWFDQKLAYDLALWIHTDSLEPKYPKGSVALIKQTFYDTAG-AIY 195 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G + K + + I L+SLN Y + + + I +++ Sbjct: 196 AIEYDGQTLIKRVFR-EAQGIRLVSLNKKYSDKVIPLEEEPRVIGKVI 242 >gi|303246421|ref|ZP_07332700.1| putative phage repressor [Desulfovibrio fructosovorans JJ] gi|302492131|gb|EFL52006.1| putative phage repressor [Desulfovibrio fructosovorans JJ] Length = 188 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM P+ GD ++++ + + + ++ K L+ + Sbjct: 91 PKKMVLMDVAGDSMEPMLFDGDTVLIDESQREIIAGAIFAVGIEQEVFVKSLLRVP-GKL 149 Query: 194 DLMSLNCCYPVDTVEMS-----DIEWIARILWA 221 L S N Y V+M+ + I R++W+ Sbjct: 150 VLQSRNERYAPIEVDMNGDLAGTVRIIGRVVWS 182 >gi|269861614|ref|XP_002650506.1| DNA polymerase V subunit [Enterocytozoon bieneusi H348] gi|220066032|gb|EED43551.1| DNA polymerase V subunit [Enterocytozoon bieneusi H348] Length = 143 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + P + A +T+ SM P L+++ A G+ ++ Sbjct: 35 DHYEAPISLDDLVDLRA--PHVWLGETEGDSMSPAGILNATKLVIDRARTPQVGNVVVAY 92 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 V K L + L S N YP + +IE + W+ Sbjct: 93 ID-NQPVVKRLDRQLNGGWMLSSDNPKYPPIQ-GLEEIEVFGVVTWS 137 >gi|120597913|ref|YP_962487.1| putative prophage repressor [Shewanella sp. W3-18-1] gi|120558006|gb|ABM23933.1| UmuD protein. Serine peptidase. MEROPS family S24 [Shewanella sp. W3-18-1] Length = 149 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + SM+ DIL+++ ++Q GD ++ Sbjct: 39 DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G++ K L R + L+ N Y + +++E + Sbjct: 96 GIHGELTVKELQLRP--CVKLIPRNQAYEPIHIPEGTELEIFGVV 138 >gi|271499115|ref|YP_003332140.1| LexA family transcriptional regulator [Dickeya dadantii Ech586] gi|270342670|gb|ACZ75435.1| transcriptional repressor, LexA family [Dickeya dadantii Ech586] Length = 203 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 37/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A + G R P+ Sbjct: 1 MKALTTRQQQVYDLIRDHISQTGMPPTRAEIASQLGF-----------------RSPNAA 43 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + L G + G G G Sbjct: 44 E-------------EHLKALARKGVIEIVTGASRGIRLLMEEEDQGLPLIGRVAAGEPLL 90 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 91 AQQHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L++ N + V++ + Sbjct: 151 -EDEVTVKRLKKQ-GNIVQLLAENKEFSPIVVDLRE 184 >gi|38638093|ref|NP_943203.1| translesion synthesis protein [Erwinia amylovora] gi|37681991|gb|AAQ97878.1| MucA [Erwinia amylovora] Length = 144 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + SM GD+L+++ A + G ++ + K L Sbjct: 43 HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R LM LN +P + ++ + Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132 >gi|307823398|ref|ZP_07653627.1| transcriptional repressor, LexA family [Methylobacter tundripaludum SV96] gi|307735383|gb|EFO06231.1| transcriptional repressor, LexA family [Methylobacter tundripaludum SV96] Length = 211 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 21/200 (10%), Positives = 42/200 (21%), Gaps = 14/200 (7%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 P+ E + + + + E E++ + Sbjct: 8 KQQEVFDFLLQNQNNFPHPPTLEELCAGMGLKSRGSLHNHIKALINENLVEAPERKQRGI 67 Query: 94 YFPPS---------GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 G G V S Q K + Sbjct: 68 RLTEYAKEMIGYSNDQSALPFVGFIAAGKPIEAVENITYMS-IPEQLKTQNPCYVLKVKG 126 Query: 145 TSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 SM GD +I+ G+ ++ + K + ++ L+ N Sbjct: 127 DSMLEQGIYDGDWVIIEQRCHARNGEIVVALINKAEATLKFIEQYPHETL-LIPANSTME 185 Query: 204 VDTVEMSDIEWIARILWASQ 223 +E + Q Sbjct: 186 AMRYTPEQVEIQG--VLVGQ 203 >gi|85860762|ref|YP_462964.1| DNA polymerase V subunit [Syntrophus aciditrophicus SB] gi|85723853|gb|ABC78796.1| DNA polymerase V subunit [Syntrophus aciditrophicus SB] Length = 195 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 8/185 (4%) Query: 36 TSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT-TEKKEKEIPLLY 94 S K R R P+ E + +L ++++ + + + + + Sbjct: 8 PSVKKQIAGFFRERKRMPTYEEMVALLGVRSKSVVHFWINKLVEAKILEKDRGGHLAWKE 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 P S + FP+ + +I S + A + SM Sbjct: 68 RPFSIPMVGEVAAGFPSP---EEEELRDILSLDEYLVARPDASFLLQVSGDSMTGAGILP 124 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 GD++I+ + GD ++I G+ K + + L + N Y +++ Sbjct: 125 GDLVIVEKGREPKNGD-VVIAEVDGEWTMKTF-RKEKGEVYLEAANPKY-PIIRPRQELK 181 Query: 214 WIARI 218 + Sbjct: 182 LAGVV 186 >gi|315637279|ref|ZP_07892498.1| XRE family transcriptional regulator [Arcobacter butzleri JV22] gi|315478443|gb|EFU69157.1| XRE family transcriptional regulator [Arcobacter butzleri JV22] Length = 216 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 25/201 (12%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 ++ K + S + KR K + T IC+ + + +T + Sbjct: 24 REISEKYKITQQSVGQLKR---------------KKAINETISFICEAEKINLNWIQTGK 68 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPEIRSPHNGIYAIQTQDTRHK- 141 + + + G + + S + + K Sbjct: 69 GEMFISEDIVKNSDSYSIDLLNVRAGAGEGIYNYVIETVDTISLDKSFFRSPINTNKVKG 128 Query: 142 --TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 SM P R GD ++++ I G I+ K L + +I ++S N Sbjct: 129 ICVDGDSMEPTLRDGDYVLIDENINFGTNGI-YAIQYGGQILIKRLQFKMDGTIIIISDN 187 Query: 200 CCYPVDTVEMSD----IEWIA 216 Y + S+ I Sbjct: 188 EKYDREIFNPSENQLPFNIIG 208 >gi|292488579|ref|YP_003531463.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia amylovora CFBP1430] gi|292899749|ref|YP_003539118.1| protein UmuD [Erwinia amylovora ATCC 49946] gi|291199597|emb|CBJ46714.1| protein UmuD [Erwinia amylovora ATCC 49946] gi|291554010|emb|CBA21063.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia amylovora CFBP1430] gi|312172726|emb|CBX80982.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia amylovora ATCC BAA-2158] Length = 139 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + V + + + K SM GD+LI++ ++ GD ++ Sbjct: 32 DYVE--DRIDLNKLAIKHPSATYFIKVSGDSMCEAGIGDGDLLIVDRSLNAVHGDIVVAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+ K L + + L+ N Y + ++E + Sbjct: 90 I-AGEFTVKELRTHP--FLQLVPHNPHYSPISFRNEEELEIFGVV 131 >gi|2688954|gb|AAC82517.1| MucA [IncL/M plasmid R446b] Length = 144 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + SM GD+L+++ A + G ++ + K L Sbjct: 43 HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R LM LN +P + ++ + Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132 >gi|238794668|ref|ZP_04638273.1| LexA repressor [Yersinia intermedia ATCC 29909] gi|238725974|gb|EEQ17523.1| LexA repressor [Yersinia intermedia ATCC 29909] Length = 202 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ + + + P + +A++ G R P+ Sbjct: 1 MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEDGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G + L+ N + V++ + Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIIVDLRE 183 >gi|71275911|ref|ZP_00652194.1| Peptidase S24, LexA repressor [Xylella fastidiosa Dixon] gi|71899251|ref|ZP_00681413.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1] gi|170729336|ref|YP_001774769.1| LexA repressor [Xylella fastidiosa M12] gi|229470192|sp|B0U1K7|LEXA_XYLFM RecName: Full=LexA repressor gi|71163288|gb|EAO13007.1| Peptidase S24, LexA repressor [Xylella fastidiosa Dixon] gi|71730984|gb|EAO33053.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1] gi|167964129|gb|ACA11139.1| Repressor lexA [Xylella fastidiosa M12] Length = 211 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 54/209 (25%), Gaps = 23/209 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I ++PS +AR G G+ ++ Sbjct: 7 QQAILSLITNHINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 56 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + +L P G G + Sbjct: 57 RVPGQARGIRLKHLTQVDEAALALQSEDVLRLPVLGRVAAGQPIGADIGE--------DR 108 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + ++ D + Q SM GD++ ++ + G ++ + +I Sbjct: 109 VVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTHDAHSGQIVVARID-DEITV 167 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N + V Sbjct: 168 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 195 >gi|200389474|ref|ZP_03216085.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199601919|gb|EDZ00465.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 158 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 7/143 (4%) Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + S + + L + FP+ + + + + Sbjct: 6 NEATVYKNSIWVWIMEFFRPTELREIIYLPFFSYLVPCGFPSPAA-DYIE--QRIDLNEL 62 Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + K SM+ GD+L+++S+ GD ++ G+ K L R Sbjct: 63 LVSHPSSTYFVKATGDSMIDAGINDGDLLVVDSSRTAEHGDIVIAAVD-GEFTVKRLQLR 121 Query: 189 RGRSIDLMSLNCCYPVDTVEMSD 211 ++ L +N Y V D Sbjct: 122 P--TVQLNPMNSAYSPIIVGSED 142 >gi|145629809|ref|ZP_01785603.1| hypothetical protein CGSHi22121_00852 [Haemophilus influenzae 22.1-21] gi|148827552|ref|YP_001292305.1| hypothetical protein CGSHiGG_04885 [Haemophilus influenzae PittGG] gi|144977955|gb|EDJ87743.1| hypothetical protein CGSHi22121_00852 [Haemophilus influenzae 22.1-21] gi|148718794|gb|ABQ99921.1| hypothetical protein CGSHiGG_04885 [Haemophilus influenzae PittGG] Length = 256 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 70/257 (27%), Gaps = 49/257 (19%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ E + R NLT + LA G + + + + + R +I + Sbjct: 1 MTTL-----AERLKRTLLERNLTQNDLAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK---------------------------EKEIPLL 93 I A L + + + K+ L Sbjct: 50 IANALGVDPNWLRNGGDMIVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLHKQQISL 109 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQD 144 P+ F P + + Sbjct: 110 KTKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFN 169 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-P 203 SM P+ K D++ +++ + G+ + + ++ + L ++ ++ N Sbjct: 170 ESMSPVINKKDLMFVDTNCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGS 229 Query: 204 VDTV-EMSDIEWIARIL 219 + ++S + + R + Sbjct: 230 SFEIDDLSRLNVLGRCV 246 >gi|126696260|ref|YP_001091146.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9301] gi|126543303|gb|ABO17545.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9301] Length = 138 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + E + + + + + SM+ + D++I++ ++ G+ ++ Sbjct: 28 ADDYEE--ENIDLNEHLISNPFSTFFLRVKGDSMVNAGIKDKDLIIVDKSLTARPGNIII 85 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G+ K L + + L + N YP + D++ ++ Sbjct: 86 AMID-GEFTIKRLSIK-NNELYLKAENHNYPDFRFKNHIDVQIWGVVI 131 >gi|258514188|ref|YP_003190410.1| peptidase S24 and S26 domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257777893|gb|ACV61787.1| peptidase S24 and S26 domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 338 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 11/112 (9%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 NK + VP SM+ +GD+++ Sbjct: 176 LSEQNKIGEIDVPANLVGRVD--------FALYVNGNSMIGAGINEGDLVLCKQDYNPYP 227 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ T + K I + L + N Y + D + ++ Sbjct: 228 GEIVVALVNTDETTLKYYIK-ENDKVLLRAANPKYKDIELGPGD-QIQGNVV 277 >gi|332360345|gb|EGJ38157.1| phage transcriptional repressor [Streptococcus sanguinis SK49] Length = 257 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 64/232 (27%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + L+R+ G+ ++ + P ++ KI Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111 + ++ ++ + + FP Sbjct: 74 VEEIDPRYRLIADIPQQFPDLNHIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + + + + D + S+ P Y D + L Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|300722911|ref|YP_003712207.1| putative prophage repressor protein [Xenorhabdus nematophila ATCC 19061] gi|297629424|emb|CBJ90025.1| putative prophage repressor protein ( phage repressor protein cI) [Xenorhabdus nematophila ATCC 19061] Length = 237 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/233 (8%), Positives = 65/233 (27%), Gaps = 21/233 (9%) Query: 2 TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + ++I +A + + ++ +T LA + ++ + + Sbjct: 3 KKLTTEQIADAARLKELFESKKKQLGITQETLAEEIDKTQSAISHYLNGIN-----ALNL 57 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E I R + + + + + W Sbjct: 58 EMATYFAQKLGIRIADFSPSLDKQARKLARVLYGDKVSFVNHPQFQKQYPLLDWENAGHW 117 Query: 116 NTVGVPEIRS-----PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVN 166 P S + + + + +M+ +G I++++ ++ Sbjct: 118 CEETTPTYHSNSIEKRYETVVECSQRAFWLAVKGDAMVSPSGLSIPQGMIILVDPEVKPK 177 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + ++ K + + + G L LN Y + ++ + + ++ Sbjct: 178 TNNLVVAKLDGEEELIFRQLISEGYDTFLKPLNSQYNMIPLD-DHVYIMGVVV 229 >gi|114324653|gb|ABI63635.1| unknown [Streptococcus salivarius] Length = 264 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 67/251 (26%), Gaps = 47/251 (18%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ + T + K G + K + P+ + + K++ T Sbjct: 17 DRLIKLRQARGWTKKEFSAKIGKTQQTVGKWENGSN-----APTFKDLVKLVGLFGVTSD 71 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSG---------SGGFFDSGVFPTGNKWNTV--- 118 LL L S + + + F + + Sbjct: 72 YLLGLSDSPSKYAYPPINDNKQEQVEEMFKELDEGNQDATVDFIENRLDNQHISKEIKEN 131 Query: 119 ----------GVPEIRSP-------------------HNGIYAIQTQDTRHKTQDTSMLP 149 P R + I D K SM P Sbjct: 132 DLKKQTGINEERPTKRVSIYARVDAQGFELSEVPVDCLDYPVPIPVHDIALKVVGNSMEP 191 Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-E 208 ++ +++ + + GD +++ + V KV + I L SLN ++ Sbjct: 192 IFLDDEVIFVMKNSILRTGDIAIVQLDSRYCVMKVCKNSENGDIILNSLNTDETAISLTR 251 Query: 209 MSDIEWIARIL 219 + +++ Sbjct: 252 KNSCTIFGKVV 262 >gi|270263338|ref|ZP_06191608.1| transcriptional repressor [Serratia odorifera 4Rx13] gi|270043026|gb|EFA16120.1| transcriptional repressor [Serratia odorifera 4Rx13] Length = 202 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + P + +A + G R P+ Sbjct: 1 MKALTTRQQEVYDLIRDHISSTGMPPTRAEIAMRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEDEEGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPSLFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L G ++L+ N + V++ Sbjct: 150 -EDEVTVKRLKKH-GNVVELLPENSEFQPIVVDLRQ 183 >gi|328946013|gb|EGG40159.1| phage transcriptional repressor [Streptococcus sanguinis SK1087] Length = 257 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + L+R+ G+ ++ + P ++ KI Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111 + ++ ++ + + + FP Sbjct: 74 VEEIDPRYRLIADIPQQFPELNRIYQQLNQDRQEQGLKLLEASLTEQETHASLKDDYFP- 132 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + + + + D + S+ P Y D + L Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|862632|gb|AAC45831.1| RumA(R391) [IncJ plasmid R391] gi|19571780|emb|CAD27658.1| RumA protein [Providencia rettgeri] gi|20095189|gb|AAM08055.1| RumA [Providencia rettgeri] gi|262318127|dbj|BAI48453.1| RumA [Proteus mirabilis] gi|1096690|prf||2112258A rumA gene Length = 149 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + SM+ DIL+++ ++Q GD ++ Sbjct: 39 DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G++ K L R + L+ N Y + +++E + Sbjct: 96 GIHGELTVKELQLRP--CVKLIPRNQAYEPIHIPEGTELEIFGVV 138 >gi|160899547|ref|YP_001565129.1| putative phage repressor [Delftia acidovorans SPH-1] gi|160365131|gb|ABX36744.1| putative phage repressor [Delftia acidovorans SPH-1] Length = 216 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 58/223 (26%), Gaps = 29/223 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +K + +R + + + K R ES+ K Sbjct: 14 AMLFGEKSIAGLRAEMKRDGY---------DIGQGTLGRIKNGETGVR-----MESLQKF 59 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 I LL D + + + P S G + + Sbjct: 60 ADYFRVDIDTLLRGQVDDEDDYIQISRLSVEVGAGPGRSNGVVEHLS----------ALQ 109 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 R TSM P R G IL+LN A + + GD++ Sbjct: 110 FRRDFLRAAGVSPLNAAVVNVVGTSMEPTIRDGSILLLNRADKEPRNGSIYAFSWDGDML 169 Query: 182 AKVLISRRGRSIDLMSLNCC---YPVDTVE-MSDIEWIARILW 220 K +S N +P V+ ++ R +W Sbjct: 170 VKRFQRVSD-VWHAVSDNADKDEHPDIVVDGKAEALIQGRAIW 211 >gi|270619286|ref|ZP_06221803.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] gi|270317856|gb|EFA29200.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] Length = 96 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 SM P+ G + ++ + ++ G + K+L + + Sbjct: 5 ENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVK 64 Query: 195 LMSLN-CCYPVDTVEMSDIEWIARILWAS 222 + S N +P + E+ DI + ++ W S Sbjct: 65 IRSYNTEEHPDEIAELQDISVLGKVFWYS 93 >gi|167821752|ref|ZP_02453432.1| repressor protein, putative [Burkholderia pseudomallei 91] Length = 208 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 11/174 (6%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 P E++ K AT + I LL E + + S F +P Sbjct: 39 PGLETLRKFRDATGKPIGWLLGEDVLYVSADENQALKPK-------ESDEFVYIPRYPRN 91 Query: 113 NKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 V + R A + + D M + + D +++N D L Sbjct: 92 GALEQVTMAFRRYWVEKYLQANPEKLIVLRVDDDVMEGTFNRADNILVNMNPLSPVKDGL 151 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWAS 222 +V + + I +M N YP + + +E +W S Sbjct: 152 YALYINDAMVVRRVQVLPNNVIRVMPDNPRYPSFETSLEEGSGVEIAGVPVWYS 205 >gi|2688959|gb|AAC82521.1| MucA [IncL/M plasmid R471a] gi|44443459|gb|AAS47041.1| MucA [Enterobacter cloacae] Length = 144 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + SM GD+L+++ A + G ++ + K L Sbjct: 43 HDYCVRHPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R LM LN +P + ++ + Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132 >gi|21230556|ref|NP_636473.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769453|ref|YP_244215.1| LexA repressor [Xanthomonas campestris pv. campestris str. 8004] gi|44888105|sp|Q8PBM1|LEXA1_XANCP RecName: Full=LexA repressor 1 gi|21112131|gb|AAM40397.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574785|gb|AAY50195.1| LexA repressor [Xanthomonas campestris pv. campestris str. 8004] Length = 201 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176 +G+ ++A++ + Q SM+ +GD++ + + G ++ + Sbjct: 95 IGLDRQLWLDRSLFALRPD-YLLQVQGDSMIDDGILEGDLVGVQRSSDARNGQIVVARVD 153 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L +I L+ N + V Sbjct: 154 -GEITIKRLER-SADAIRLLPRNPAHAPIVVAAD 185 >gi|270159934|ref|ZP_06188590.1| UmuD [Legionella longbeachae D-4968] gi|289165318|ref|YP_003455456.1| UmuD protein [Legionella longbeachae NSW150] gi|269988273|gb|EEZ94528.1| UmuD [Legionella longbeachae D-4968] gi|288858491|emb|CBJ12372.1| putative UmuD protein [Legionella longbeachae NSW150] Length = 168 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 40/107 (37%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + ++ + + SM+ GD L+++ +I+ + G ++ Sbjct: 58 ADDYIE--GYLDLNSKFIKHPSSTFVLQATGDSMVDAGIFSGDWLLVDRSIEPSDGRIVI 115 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L+++ G + L+ N + + I ++ Sbjct: 116 AAVN-GELTVKRLLNK-GGKVQLLPANPKFKPIDITEGSEMVIWGVV 160 >gi|259156159|gb|ACV96107.1| protein UmuD [Providencia alcalifaciens Ban1] Length = 149 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + SM+ DIL+++ ++Q GD ++ Sbjct: 39 DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G++ K L R + L+ N Y + +++E + Sbjct: 96 GIHGELTVKELQLRP--CVMLIPRNRAYEPIHIPEGTELEIFGVV 138 >gi|302038441|ref|YP_003798763.1| lexA repressor [Candidatus Nitrospira defluvii] gi|300606505|emb|CBK42838.1| LexA repressor [Candidatus Nitrospira defluvii] Length = 183 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 49/199 (24%), Gaps = 42/199 (21%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ E+ LT LA S + + + +I A I QL Sbjct: 8 RQIREQLGLTQEELAAALRTTRVSVARYESG-------------MRRISGAVQVAITQLA 54 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + I + V VP Sbjct: 55 NRTQIPMAGVVAAGLPIEPVTQS-------------------EWVEVPPGMVR------- 88 Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + + + SM GD++++ + G ++ + K R Sbjct: 89 KGETFALRVKGESMIEDGILPGDLVVVRKQATAHNGQTVVALVNR-EATIKTYFKRATN- 146 Query: 193 IDLMSLNCCYPVDTVEMSD 211 I+L N V D Sbjct: 147 IELHPANVAMKPFVVTPED 165 >gi|293390737|ref|ZP_06635071.1| LexA repressor [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951271|gb|EFE01390.1| LexA repressor [Aggregatibacter actinomycetemcomitans D7S-1] Length = 207 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 65/224 (29%), Gaps = 35/224 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + +++++ + E + P+ +A + + +++ Sbjct: 1 MKPLTARQQEVYDFLKHHLETTGMPPT----RAEISK------ELGFRSPNAAEEHLKAL 50 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K + LL G G G Sbjct: 51 AK---------------KGVIEIVSGTSRGIRLLLEDHSQEEAGLPLIGRVAAGEPILAE 95 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + D K SM + GD+L ++S V G ++ + Sbjct: 96 QHIEGTYHVDPNMFKPQADFLLKVYGQSMKDVGILDGDLLAVHSTKDVRNGQIVVARI-E 154 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216 ++ K L + G + L + N + V+++ +IE IA Sbjct: 155 DEVTVKRLERK-GSVVYLHAENEEFSPIVVDLTQPMHFEIEGIA 197 >gi|157372693|ref|YP_001480682.1| LexA repressor [Serratia proteamaculans 568] gi|166990803|sp|A8GKB4|LEXA_SERP5 RecName: Full=LexA repressor gi|157324457|gb|ABV43554.1| transcriptional repressor, LexA family [Serratia proteamaculans 568] Length = 202 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + P + +A + G R P+ Sbjct: 1 MKALTTRQQEVYDLIRDHISSTGMPPTRAEIAMRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIISGASRGIRLLMEDEEGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPSLFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L G ++L+ N + V++ Sbjct: 150 -EDEVTVKRLKKH-GNVVELLPENSEFQPIVVDLRQ 183 >gi|302127790|emb|CBO78204.1| MucA protein [Salmonella enterica subsp. enterica serovar Enteritidis] Length = 144 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + SM GD+L+++ A + G ++ + K L Sbjct: 43 HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 R LM LN +P + ++ + Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132 >gi|255320061|ref|ZP_05361256.1| peptidase S24-like domain protein [Acinetobacter radioresistens SK82] gi|262378255|ref|ZP_06071412.1| HTH-type transcriptional regulator PrtR [Acinetobacter radioresistens SH164] gi|255302870|gb|EET82092.1| peptidase S24-like domain protein [Acinetobacter radioresistens SK82] gi|262299540|gb|EEY87452.1| HTH-type transcriptional regulator PrtR [Acinetobacter radioresistens SH164] Length = 234 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 19/228 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I ++ NL L + +K + S + K L T E Sbjct: 3 NVSERILLRMKQLNLQQVDLIAATESSKGTVSKWISGVNMPSGK--SIIPLAKALKTTPE 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL-LYFPPSGSGGFFDSGVFPTGNKW-------NTVG 119 I P +T ++ FF + F G+ + Sbjct: 61 WILTGEGPPLLKDQTLQEVSTWDESTPINKDEIEIPFFQNFSFDCGSGSVGEALKAQSQV 120 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM P + GD + L+ + ++ G Sbjct: 121 LRISKATLRDLGIEKENAVATGASGDSMKPTIKDGDTIYLDLGRKTIKDGKIFAICHGGL 180 Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD--------IEWIARI 218 VAK L + + ++S N YP + + + W+ RI Sbjct: 181 FVAKRLYNLPMGGVRIVSDNTAEYPEVLLNAEERKEQEFEIVGWVWRI 228 >gi|54301769|ref|YP_131762.1| prophage MuSo1, Cro/CI family transcriptional regulator [Photobacterium profundum SS9] gi|46915189|emb|CAG21962.1| putative prophage MuSo1, transcriptional regulator, Cro/CI family [Photobacterium profundum SS9] Length = 220 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/204 (11%), Positives = 58/204 (28%), Gaps = 14/204 (6%) Query: 30 KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE 89 K G+ S + G + ++ +I + + D S + ++ Sbjct: 17 KDGIAHFSVRLKELIGNGPKLTESTSHTIEHLQPINHINKNLKWDNLISVCAYSNDDAQQ 76 Query: 90 IPLLYFPPSGSGGFF--DSGVFPTGNKWNTVGVPEIRS------PHNGIYAIQTQDTRHK 141 + G+ + + P R + Sbjct: 77 EDGANDAINEEFVLVPGYHIQVSAGHGTSAIYAPVKRYLAFRRKYIQYRKLDPNKLAVIF 136 Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 + P+ + D L+++ ++ + ++ AK + S+ L+S N Sbjct: 137 AKGD---PMIKDNDSLLIDLNANKPLDGKIFVVRLGDELYAKRVQKSFDGSLRLISDNKE 193 Query: 202 YPVDTVEMSDIE---WIARILWAS 222 Y V ++ I R++ S Sbjct: 194 YSPIEVSTDQLDQLCIIGRVVQRS 217 >gi|293386435|ref|YP_003540597.1| UV protection protein [Erwinia amylovora ATCC 49946] gi|291201078|emb|CBJ48216.1| UV protection protein [Erwinia amylovora ATCC 49946] Length = 142 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V ++ ++ + SM + GD+++++ ++ GD ++ Sbjct: 35 DYVE--ASLDLNDLCIRHRSATYFVRASGDSMNDAGIKDGDLMVVDKSLTAEHGDIVIAA 92 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 G+ KVL R + L +N +P E +E + W Sbjct: 93 -VEGEFTVKVLQLRP--RLALQPMNPSFPTLFPEPDTLEIFGVVTW 135 >gi|301381627|ref|ZP_07230045.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. tomato Max13] Length = 232 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 4/193 (2%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 S LA G ++ + + + ++ A + L L D + + Sbjct: 27 QSRLAEMLGKPQNLLSRYLSSPEKAGAKTIGEDFAREVEKAFDLPRYALDILEAPDDQVS 86 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 E+ P+ + W + + + + + Sbjct: 87 ASNNFEVGPPITSPTRRIAIVGTAQLGPDGYWAGLDTTDGWVETW---SRDEDAYALRLK 143 Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 SM P R G + + + ++ G+ +++K G + K L+ + LMS+N Y Sbjct: 144 GDSMAPAIRSGWVAVCEPSHRLVPGEYVMVKLCDGQSMVKELLFETEDGVSLMSVNSAYG 203 Query: 204 VD-TVEMSDIEWI 215 T+ SDIE I Sbjct: 204 ERTTLSWSDIERI 216 >gi|255019440|ref|ZP_05291546.1| Error-prone repair protein UmuD [Acidithiobacillus caldus ATCC 51756] gi|254971117|gb|EET28573.1| Error-prone repair protein UmuD [Acidithiobacillus caldus ATCC 51756] Length = 158 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 6/136 (4%) Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + + L+ + FP+ + V + + + + + Sbjct: 21 TSPRPVGALHRYRLPLMVSRIAAGFPSPA-DDYVE--KQIDLNAHLILHKEATFILRVTG 77 Query: 145 TSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 SM GD ++++ AI G ++ GD+ K L G ++ L++ N +P Sbjct: 78 WSMRDAGIFDGDEILVDRAITPTDGRIVVAAIN-GDLTVKRLRRI-GGAVHLVAENPEFP 135 Query: 204 VDTVEMSDIEWIARIL 219 + + I ++ Sbjct: 136 PIVLHEGEELCIWGVV 151 >gi|260654737|ref|ZP_05860225.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260630452|gb|EEX48646.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 240 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 71/230 (30%), Gaps = 31/230 (13%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-- 61 + +++ + + E +T ++ G+ + + + + + Sbjct: 1 MNGQELKKRLRAAREAAGVTQKTVSETLGISKMTIVRWESLDAPNEPTASQLVQLASLYG 60 Query: 62 -------LAATNETICQLLDLPFSDGRTTEKKE------KEIPLLYFPPSGSGGFFDSGV 108 AT + + + + + +PLL + G Sbjct: 61 TSVAALTAEATPADKKEAAPDDGTALYPNDPRVIPLTNCRRVPLLSPEATAHCGGGCPFH 120 Query: 109 FPTGNKWNTV-----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 T + + + +A+ ++ ++ GD LI+N A Sbjct: 121 EITSDATEYILCTPDELGSPIDDLRPPFAVPSEGDCLESVG------VYDGDKLIINPAA 174 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 ++ D ++ R + AK + R +I+L S + V V DI+ Sbjct: 175 EIRDFDICVVCWR-DSLSAKRICKR-NGTIELRSDSG---VMIVPEDDID 219 >gi|78779247|ref|YP_397359.1| SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9312] gi|78712746|gb|ABB49923.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Prochlorococcus marinus str. MIT 9312] Length = 138 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + E + + + + + SM+ + D++I++ ++ G+ ++ Sbjct: 28 ADDYTE--ENIDLNEHLISNPFSTFFLRVRGDSMINAGIKDKDLIIVDKSLTAKPGNIII 85 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G+ K L + + L + N YP + D++ ++ Sbjct: 86 AMID-GEFTIKRLSIKNDE-LYLKAENHNYPDFRFKNHIDVQIWGVVI 131 >gi|303328306|ref|ZP_07358744.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302861636|gb|EFL84572.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 242 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 64/238 (26%), Gaps = 25/238 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M F +I+E I T LA + +S + +KR + K Sbjct: 13 MPVF--AEIYERIKLATSSR--TQVELAEVLDIRQSSISDAKRRNSVP------GDWYMK 62 Query: 61 ILAATNETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + L ++ + + + Sbjct: 63 LFEKYGLNPDWLKQGVGPMYLRTEQGYMPQDAPASLAENAAHYGDALAKNSVCTEYDMHC 122 Query: 113 NKWNTVGVPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCG 168 + PE+ + + + + +M PL G L +++ V G Sbjct: 123 AYSDKKPRPELTPAGKISLPLSLSREGLLVLRMRGANMSPLILPGAHLGVDTLDNNVVSG 182 Query: 169 DRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + ++ + + L S + +P ++ + + +++W Q Sbjct: 183 QIYALFAPNEGLMLRRVFLNGAQDGYLLRSESPDFPEISLTPDLLAKRLLGKVVWVLQ 240 >gi|330897548|gb|EGH28967.1| putative UV resistance protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 143 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 5/107 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + P + A +T+ SM P G L+++ A G+ ++ Sbjct: 35 DHYEAPISLDDLVDLRA--PHVWLGETEGDSMSPAGILNGTKLVIDRARTPQVGNVVVAY 92 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 V K L R L S N YP + +IE + W+ Sbjct: 93 ID-NQPVVKRLDRPRNGGWMLSSDNPKYPPIQ-GLEEIEVFGVVTWS 137 >gi|238789914|ref|ZP_04633694.1| LexA repressor [Yersinia frederiksenii ATCC 33641] gi|238721987|gb|EEQ13647.1| LexA repressor [Yersinia frederiksenii ATCC 33641] Length = 202 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 3/178 (1%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R + P+ I + L + + + E + Sbjct: 8 QQEVYDLVRDHLSQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G E + + D + SM + Sbjct: 68 LLMEEEDGLPLIGRVAAGEPLLAQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILD 127 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD+L ++ V G ++ + ++ K L + G + L+ N + V++ + Sbjct: 128 GDLLAVHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GNIVQLLPENTEFQPIIVDLRE 183 >gi|313900736|ref|ZP_07834229.1| peptidase S24-like protein [Clostridium sp. HGF2] gi|312954798|gb|EFR36473.1| peptidase S24-like protein [Clostridium sp. HGF2] Length = 198 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 62/218 (28%), Gaps = 34/218 (15%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + ++ R ++T +A G++ ++ ++ + + I K+ Sbjct: 2 QLKDLLNEYKCRMSVTNDYIAEHVGVNKSTVSRWMKGET----KVMKPAVIEKLSYLLGT 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + LL + K G F + V + Sbjct: 58 DVESLLKNSDRFEKPLLGTAKA----------GYGLFAEENLA---GYEEVSKSDYYRG- 103 Query: 128 NGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 D + SM D++ + V G +I ++ K +I Sbjct: 104 ---------DYFLRVCGDSMTGAHIHDQDLIYVKQCDDVKSGTIAVILIGNTEVTVKRII 154 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219 + + L + N P ++ I ++L Sbjct: 155 KKEP-FLILEAANPTVPARYFTQEEVRDLPVKIIGKVL 191 >gi|319762368|ref|YP_004126305.1| peptidase s24/s26a/s26b, conserved region protein [Alicycliphilus denitrificans BC] gi|317116929|gb|ADU99417.1| Peptidase S24/S26A/S26B, conserved region protein [Alicycliphilus denitrificans BC] Length = 256 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 39/237 (16%) Query: 12 AIDRMAERHNLTPSGLARKAGLD--PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + L P L K+G ++ ++ + R + + + L Sbjct: 26 FLKAVMDARGLNPHALGAKSGNPSLQSTVHRYLERKVN-EPRRATLQPLADFLQVDVAAF 84 Query: 70 CQLL--------------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 S+ PL+ +G F G+ Sbjct: 85 FDADKARAELARLGLLAGPREESNITEGPAIRGLYPLISEVQAGMWTELCDN-FARGDAE 143 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDR 170 + + + + + + SM + +G +L + + + GD Sbjct: 144 DWLPSTKD---------LGECGYMLRVRGKSMENPGARLSFPEGMVLHVRAHLDAVPGDF 194 Query: 171 L-LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD----TVEMSDIEWIARILWAS 222 + + + TG+ K + L ++N +P + ++ D+ W ++ AS Sbjct: 195 VIVRREGTGEATFKKFVMI-DGHPYLEAINPDWPKELKYLPMQPGDV-WCGVVVDAS 249 >gi|256826753|ref|YP_003150712.1| SOS response transcriptional repressor, RecA-mediated autopeptidase [Cryptobacterium curtum DSM 15641] gi|256582896|gb|ACU94030.1| SOS response transcriptional repressor, RecA-mediated autopeptidase [Cryptobacterium curtum DSM 15641] Length = 228 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 64/229 (27%), Gaps = 16/229 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E +T +A + NK + G++ R R + + Sbjct: 1 MAQVSRSVFGKNLRAFRESRGITQQQIADVTDTTNVTVNKWENRGVQPR-RKIVDDLLAY 59 Query: 61 --ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-T 117 + + L + + G +G + + Sbjct: 60 YSLDEDDLLSDVSGLYAQIHGLTSAPAGAIAAKKPRRAYAPLLGRVHAGEAVEPDILDSE 119 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P H+ + + + M +Y +G + ++ + G + Sbjct: 120 IPIPYEVWEHH------QSGYFLQVEGSCMNRVYPEGCYVFIDPDMTPQDGSIAVSSIDE 173 Query: 178 GDIVAKVLISRRGRSIDLMSLN--CCYPVDTVEMSD---IEWIARILWA 221 D + + L ++ L + + + + + ++W Sbjct: 174 TDYIMRRLH-MGATTMILSPESFDEQWEDLIITRDSGKTVSFQGVVVWY 221 >gi|92113335|ref|YP_573263.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796425|gb|ABE58564.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 205 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 19/212 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I ++ L+ + LAR+ G+ + + + G + E + + A Sbjct: 2 DTLGPRIKQLRMEAGLSKAALARRVGVSDVTISYWE----SGTIKQIGHERLLSLAEALE 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + +LLD E + +L + + + P + P Sbjct: 58 CPLERLLDNNTPTHHEFEGELAHASILALHSASPPPWERHFLAPVASA------PGSALS 111 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 +Q + GDI + + L + +V + L Sbjct: 112 EL----LQGCYLVTPADGETFAH-LGTGDIAAVFPT-SHFDEEGLYLLQWRHTLVIQQLS 165 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ S++ P +T+ + I RI Sbjct: 166 RLPSGAL---SMDGEPPSETLPPQSLCIIGRI 194 >gi|289661574|ref|ZP_06483155.1| LexA repressor [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 201 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M S ++ + + + ++PS +A+ G R + + + Sbjct: 1 MPPLSPQRAAVLVFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++L GR +P+L +G P G Sbjct: 53 GLIELLPN-------QKRGIRMPGRAGRDALLNLPVLGRVAAG---------VPIGA--- 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +G+ ++ ++ + Q SM+ GD++ ++ + + G ++ + Sbjct: 94 DIGLERQLWLDRALFPLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L I L+ N + V Sbjct: 153 D-GEITIKRLER-GAERIRLLPRNRAHAPIVVAAD 185 >gi|126642082|ref|YP_001085066.1| EsvI [Acinetobacter baumannii ATCC 17978] Length = 154 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 17/137 (12%) Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 K P+L + +G+ S + +P+ + K Q S Sbjct: 15 AKLAPVLSWVQAGTFTNVQSVDLSM--VEEWLPLPDECT----------NCFYLKVQGVS 62 Query: 147 MLPLYRKGDILILNSA---IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 P + +GD ++++ + GD ++++ R D K L+ S L +LN + Sbjct: 63 NQPDFLEGDYILVDPDVYYSDMQSGDMVVVR-RFEDATFKKLVIETDGSRYLQALNPKFE 121 Query: 204 VDTVEMSD-IEWIARIL 219 + + + + ++ +++ Sbjct: 122 PNIIPLDEHCYFVGQVV 138 >gi|149926948|ref|ZP_01915207.1| LexA repressor [Limnobacter sp. MED105] gi|149824500|gb|EDM83718.1| LexA repressor [Limnobacter sp. MED105] Length = 220 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 61/214 (28%), Gaps = 20/214 (9%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++I + I + P + +AR+ G + Sbjct: 1 MKGLTARQQEILDLIRDQITQFGRPPTRAEIARQLGF------------RSANAAEDHLQ 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + + ++ G G+ Sbjct: 49 ALAKKNVIALDASTSRGIRLLGEYAEGLEETASKAAERAVEQFMQ-LPLIGRVAAGSPIL 107 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + P + D K + SM + GD+L + A G ++ + Sbjct: 108 AQEHVEKQIPVDPSLFPDKPDYLLKVRGMSMKDIGIMDGDLLAVKKASTARAGQVVVARV 167 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K ++G ++L + N + V++ Sbjct: 168 N-DDVTVKRFF-QKGHVVELQAENSDFAPIEVDL 199 >gi|254498939|ref|ZP_05111643.1| hypothetical protein LDG_3019 [Legionella drancourtii LLAP12] gi|254351843|gb|EET10674.1| hypothetical protein LDG_3019 [Legionella drancourtii LLAP12] Length = 182 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 44/162 (27%), Gaps = 5/162 (3%) Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + ++ L R + + Y S + V Sbjct: 17 CRYFGFLKGGAYEVPKLMEVSVRHEWVIKPFLADEYTTYSIPLYASKVQAGFPSPADDYV 76 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + SM+ GD LI++ +++ G ++ Sbjct: 77 EC--SLDLNQALIRHPSATFILIAAGESMIDAGIHPGDKLIVDRSVEAVDGKIVIAA-LE 133 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + + L+ N + + I ++ Sbjct: 134 GELTVKRLSRK-ANRVQLLPANPKFKSIDITEDSEMVIWGVV 174 >gi|319793471|ref|YP_004155111.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315595934|gb|ADU37000.1| transcriptional regulator, XRE family [Variovorax paradoxus EPS] Length = 236 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 31/236 (13%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + E LT +G+ S +K +R R ++ + + Sbjct: 2 ETIAKRAKAAREYAKLTQKQAEVVSGVKQASISKIERGAT---IRTGGLLALAR-AYRAD 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE---- 122 D P ++ + + +TV + Sbjct: 58 PNWLDTGDGPAPWDPIQIRQAQHQANEPAAIYRVVRVPPELPYFKPGTPDTVPLISWSQA 117 Query: 123 -----------IRSPHNGIYAIQTQDTRHKTQDTSMLPL------YRKGDILILNSA-IQ 164 R + + + SM Y +G I+ +++ Sbjct: 118 ANWEIAGKHTTDRWIPCIAHHSPEKTYALRVDGDSMAAASGELKSYPEGSIIFVDTNLKT 177 Query: 165 VNCGDRLLIKPRTGD-IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+R++ G + K + G L+ LN + + + ++ Sbjct: 178 PADGERVIALVTEGGKLTFKEFKEQDGPR-WLLPLNPKHEPI---RTAFVVLGTVI 229 >gi|327459757|gb|EGF06097.1| phage transcriptional repressor [Streptococcus sanguinis SK1057] Length = 257 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 64/232 (27%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + L+R+ G+ ++ + P ++ KI Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111 + ++ ++ + + FP Sbjct: 74 VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLKASLTEQETQASLKDDYFP- 132 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + + + + D + S+ P Y D + L Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|291616447|ref|YP_003519189.1| CI [Pantoea ananatis LMG 20103] gi|291151477|gb|ADD76061.1| CI [Pantoea ananatis LMG 20103] gi|327392887|dbj|BAK10309.1| 26 kDa repressor protein CI [Pantoea ananatis AJ13355] Length = 239 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 16/224 (7%) Query: 11 EAIDRMAERHNLT------PSGLA-RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + E +T A ++ G ++ K F + + ++ ++L Sbjct: 13 ARLIAACESAGITGHGRNKQVACALQRQGCKISAPGVWKWFNAQSVPDNGNLLALSQLLG 72 Query: 64 -ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + P S K + G + + Sbjct: 73 VRVEWLQHGMDQPPESYPLHAFPGPKNTFRVNSFDLGQKSAVGDDFV---EIIQAIEYDQ 129 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + +M + D L ++ ++Q GD + I + Sbjct: 130 DEARVLFSGRPADHIRLIAINSDAMSDTFAPRDQLFVDISVQNFDGDGIYIFTLDEQLYL 189 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWASQ 223 K L + + I ++S N Y ++ D+ +A+++ SQ Sbjct: 190 KRLQLQH-KRIAVISDNKRYETWYLDRDDVGSLNVLAKVIM-SQ 231 >gi|327396074|dbj|BAK13496.1| LexA repressor LexA [Pantoea ananatis AJ13355] Length = 204 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 38/214 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + +++++ I + + P + +A + G R P+ Sbjct: 1 MKALTSRQQQVYDLIRDHINQTGMPPTRAEIAAQLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA L S G G G Sbjct: 44 EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEPSEGLPLIGRVAAGEPL 90 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + + D + SM + GD+L ++ V G ++ + Sbjct: 91 LAQEHIETHYKVDPDMFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 150 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ K + G + L+ N + V+ Sbjct: 151 ID-DEVTVKRWKKQ-GSVVHLLPENNDFEPIVVD 182 >gi|319937013|ref|ZP_08011423.1| hypothetical protein HMPREF9488_02257 [Coprobacillus sp. 29_1] gi|319807949|gb|EFW04528.1| hypothetical protein HMPREF9488_02257 [Coprobacillus sp. 29_1] Length = 199 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 37/213 (17%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I+ ++ +PS +A G+ + K + ++ Sbjct: 11 EIKKYIEDYYLQNRQSPSTTKIAEAVGIARGTAYKY----------------LIEMAEKN 54 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + ++ + + S + N V +P Sbjct: 55 MIEYDGQEISTNVTRKYSGEQTQTPIV-------GSIPCGSPQYEEENIEEYVSLPAAIF 107 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + SM GD++++ ++ N GD ++ K Sbjct: 108 G-------KGDFFILRASGQSMIEAGIDDGDLVVVKKQVEANEGDIVVALVD-NQNTLKR 159 Query: 185 LISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + I L N V + Sbjct: 160 YFRDDENKKIILHPENKKMKDIIV--DECCIQG 190 >gi|264679715|ref|YP_003279624.1| phage repressor [Comamonas testosteroni CNB-2] gi|262210230|gb|ACY34328.1| putative phage repressor [Comamonas testosteroni CNB-2] Length = 220 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 29/218 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +AI R+ + + AG + + + R ESI K Sbjct: 22 GKAIGRLRDEM--------KTAGYAIGQGTLARIIAGDTGVR-----MESIQKFADFFGI 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + LL P +DG + + +G G + + R Sbjct: 69 STGALLHEPIADGENDFVPVARLSVQVGAGNGRH---------VGVVTSLGLLQFRRDFL 119 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + SM P R G IL+LN A + ++ G+++ K + Sbjct: 120 KSAGVSPINAAVVTVKGVSMEPTIRDGSILLLNKADREPRAGQIYAFSWDGEMLVKRFQT 179 Query: 188 RRGRSIDLMSLNCC---YPVDTVE-MSDIEWIARILWA 221 G +S N YP ++ ++ R +W Sbjct: 180 I-GGVWRAVSDNADKSEYPDIIIDGKAETLIQGRAIWV 216 >gi|325694374|gb|EGD36286.1| phage transcriptional repressor [Streptococcus sanguinis SK150] Length = 257 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 64/232 (27%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + L+R+ G+ ++ + P ++ KI Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111 + ++ ++ + + FP Sbjct: 74 VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + + + + D + S+ P Y D + L Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|225076712|ref|ZP_03719911.1| hypothetical protein NEIFLAOT_01763 [Neisseria flavescens NRL30031/H210] gi|224951988|gb|EEG33197.1| hypothetical protein NEIFLAOT_01763 [Neisseria flavescens NRL30031/H210] Length = 213 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 8/163 (4%) Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++ L P S + + + L + G P + V Sbjct: 47 RRLEEDYGMGSYYLDSTPNSPIGSDDDYQIRFERLNIEAACGNGI---ENLPAE-VVDYV 102 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + + + SM +GD++ +++A+ D + + + Sbjct: 103 NVSRLWAKDKFGGNL-SHIKIITARGDSMAGTIDEGDVIFVDTAVTEIVEDGVYLIHVSD 161 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARI 218 + AK L + ++S N Y +TV ++ ++ +I Sbjct: 162 GLRAKRLQRTVTGGVKILSDNKRYETETVEKHDLEQLKICGKI 204 >gi|303327564|ref|ZP_07358005.1| UmuD protein [Desulfovibrio sp. 3_1_syn3] gi|302862504|gb|EFL85437.1| UmuD protein [Desulfovibrio sp. 3_1_syn3] Length = 160 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + H + + + SML GD+LI++ +++ R++I Sbjct: 52 EDDLDRKLDLHEYLVRNEAATFFLRAHGDSMLGAGIHDGDLLIVDRSVEAGHR-RVVIAA 110 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L+ R + L N C+ + + I ++ Sbjct: 111 LDGELTVKRLLRR-AGRVLLAPENPCFSPIDITEREYVHIWGVV 153 >gi|115314530|ref|YP_763253.1| prophage repressor protein [Francisella tularensis subsp. holarctica OSU18] gi|167010190|ref|ZP_02275121.1| prophage repressor protein [Francisella tularensis subsp. holarctica FSC200] gi|254367392|ref|ZP_04983418.1| prophage repressor protein [Francisella tularensis subsp. holarctica 257] gi|115129429|gb|ABI82616.1| prophage repressor protein [Francisella tularensis subsp. holarctica OSU18] gi|134253208|gb|EBA52302.1| prophage repressor protein [Francisella tularensis subsp. holarctica 257] Length = 221 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 12 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 T +L + +G + P + + +P+ Sbjct: 67 PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 108 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 I + Q SM P +G+ ++++ D++++ Sbjct: 109 IPKNSFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 168 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + +D I R++ Sbjct: 169 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 213 >gi|317046525|ref|YP_004114173.1| transcriptional repressor, LexA family [Pantoea sp. At-9b] gi|316948142|gb|ADU67617.1| transcriptional repressor, LexA family [Pantoea sp. At-9b] Length = 204 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 38/217 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + +++++ I + + P + +A + G R P+ Sbjct: 1 MKALTSRQQQVYDLIRDHINQTGMPPTRAEIAAQLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA L S G G G Sbjct: 44 EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEASEGLPLIGRVAAGEPL 90 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + T D + SM + GD+L ++ +V G ++ + Sbjct: 91 LAQEHIEAHYQVDANLFKPTADFLLRVSGMSMKDIGIMDGDLLAVHKTQEVRNGQVVVAR 150 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K + + L+ N + V+ + Sbjct: 151 ID-DEVTVKRWKKQGA-IVQLLPENSDFQPIVVDTRE 185 >gi|124515802|gb|EAY57311.1| LexA repressor [Leptospirillum rubarum] Length = 222 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 25/209 (11%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++++E I + L P S +A+ G+ P +S L Sbjct: 11 QREVFEFILKWMRETRLPPTLSEVAQFLGV-------------------PYPKSAATHLD 51 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + + G + + + G G + VP+ Sbjct: 52 ALEKKGFIQRSPGKARGILLTPLGESYQMDRLVENIVEIPI-VGRIRAGRLTGSEIVPDG 110 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + D + + SM GD+ + + GD ++ G++ Sbjct: 111 TLAVPLSLFSEKPDFVLQIRGDSMNGAGILDGDMAFIRKTREARNGDLIV-AHIQGEMTL 169 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K LI R I L + N Y V D Sbjct: 170 KQLI-VEKRQIILRAANPLYADIRVSPDD 197 >gi|197286578|ref|YP_002152450.1| LexA repressor [Proteus mirabilis HI4320] gi|227357653|ref|ZP_03842006.1| LexA repressor [Proteus mirabilis ATCC 29906] gi|229621741|sp|B4EYR3|LEXA_PROMH RecName: Full=LexA repressor gi|194684065|emb|CAR45417.1| LexA repressor [Proteus mirabilis HI4320] gi|227162363|gb|EEI47367.1| LexA repressor [Proteus mirabilis ATCC 29906] Length = 203 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 37/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ + + + P + +A + G R P+ Sbjct: 1 MKALTARQQQVYDLVRDHISQTGMPPTRAEIASQLGF-----------------RSPNAA 43 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + L G + G G G Sbjct: 44 E-------------EHLKALARKGVIEIVSGASRGIRLLLEEEPEGLPLIGRVAAGEPLL 90 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + + D + SM + GD+L ++ V+ G ++ + Sbjct: 91 AQEHIESHYQVDPMLFKPSADFLLRVNGMSMKDIGIMDGDLLAVHKTQDVHNGQVIVARI 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K G I+L + N + V++ + Sbjct: 151 -EDEVTVKRFKKV-GSKIELHAENPEFSPIIVDLRE 184 >gi|71899997|ref|ZP_00682142.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1] gi|71730207|gb|EAO32293.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1] Length = 211 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 55/209 (26%), Gaps = 23/209 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I ++PS +AR G G+ ++ Sbjct: 7 QQAILSLITNNINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 56 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + ++ + +L P G G + Sbjct: 57 RVPGQARGIRLKHLTEVDEAALALQSKDVLRLPVLGRVAAGQPIGADIGE--------DR 108 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + ++ D + Q SM GD++ ++ + G ++ + +I Sbjct: 109 VVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVARID-DEITV 167 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N + V Sbjct: 168 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 195 >gi|197286330|ref|YP_002152202.1| DNA repair protein [Proteus mirabilis HI4320] gi|194683817|emb|CAR44905.1| DNA repair protein [Proteus mirabilis HI4320] Length = 149 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + SM+ DIL+++ ++Q GD ++ Sbjct: 39 DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G++ K L R + L+ N Y V +++E + Sbjct: 96 GIHGELTVKELQLRP--CVMLIPRNQAYEPIHVSEGTELEIFGVV 138 >gi|72382667|ref|YP_292022.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. NATL2A] gi|72002517|gb|AAZ58319.1| SOS-response transcriptional repressor, LexA [Prochlorococcus marinus str. NATL2A] Length = 202 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 8/192 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I + PS + + + + Q + +E + L Sbjct: 10 QQELYDWLVDFIGDHHHSPSIRQMMQAMGLRSPAPIQSRLRHLQQKGWIKWQEGQARTLQ 69 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G T + N + ++ SM+ Sbjct: 70 LIEESISGVPVLGAIAAGGLVETFDDVQETLDLNSVLQLKG-LFALTVNGDSMIDSFIAD 128 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++++ + G + K G + L + N Y ++ Sbjct: 129 GDMVLMEPVNEPARLRNGTIVSAMVPGLGTTLKHFFRD-GSLVRLEAANTSYDPIEIDAE 187 Query: 211 DIEWIARI--LW 220 + ++ +W Sbjct: 188 QVHIQGKLAAVW 199 >gi|325926873|ref|ZP_08188154.1| SOS-response transcriptional repressor, LexA [Xanthomonas perforans 91-118] gi|325542689|gb|EGD14150.1| SOS-response transcriptional repressor, LexA [Xanthomonas perforans 91-118] Length = 191 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 7/103 (6%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNC 167 P G +G+ +++++ + Q SM+ GD++ ++ + + Sbjct: 79 LPIGA---DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARD 134 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G ++ + G+I K L I L+ N + V Sbjct: 135 GQIVVARVD-GEITIKRLER-GAERIRLLPRNRAHAPIVVAAD 175 >gi|116073241|ref|ZP_01470503.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. RS9916] gi|116068546|gb|EAU74298.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. RS9916] Length = 212 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 49/189 (25%), Gaps = 6/189 (3%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I + PS + + + + Q +E + L Sbjct: 20 QQELYDWLSDYIGANHHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 79 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + G G G T + R + Q SM+ Sbjct: 80 LLGGLASGIPVLGAVAAGGLVETFDDVQERLDLAPVLETQG-LFALTVNGDSMVDAHIAD 138 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++++ ++ G + K +I L + N Y + + Sbjct: 139 GDVVLMEPVLEASRLREGTIVSALVPGSGTTLKHFHR-SKGTIRLEAANPAYEPIVLPVD 197 Query: 211 DIEWIARIL 219 ++ +++ Sbjct: 198 QVQVQGKLV 206 >gi|158341487|ref|YP_001522652.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina MBIC11017] gi|158311728|gb|ABW33338.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina MBIC11017] Length = 143 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 11/122 (9%) Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH--------NGIYAIQTQDTRHKTQDTSML 148 + + D P + + G P H + + + + SM Sbjct: 5 SVHAVEWADPVCLPIFSAPVSAGFPSPADDHLQKNLNLQDALIPRPAATFLMRVEGDSME 64 Query: 149 P-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 GD+L+++ +I G ++I G+ K L + I L + N YP TV Sbjct: 65 GCGIFSGDLLVVDRSIDPVDG-AVVIAVLEGEFTVKRL-RKTQGKILLTAENPDYPPITV 122 Query: 208 EM 209 + Sbjct: 123 QR 124 >gi|261340380|ref|ZP_05968238.1| repressor protein c2 [Enterobacter cancerogenus ATCC 35316] gi|288317471|gb|EFC56409.1| repressor protein c2 [Enterobacter cancerogenus ATCC 35316] Length = 238 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 28/223 (12%) Query: 10 WEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFK------- 60 +AI ++ +T +A + + + S + K Sbjct: 18 LKAIYEAKKKVLGVTQQSIADELDITQGAVGHYLNGRNPLNLPVASVFARLLKVSVEEFS 77 Query: 61 --ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +E ++ P K P++ +GS + + + Sbjct: 78 PTLAKELSEMGLNSVNEPSVPYVIGYTPGKRYPVISSVQAGSWCEAME-PYSIKDVDQWL 136 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-I 173 IQ + + SM +G ++ ++ + G ++ Sbjct: 137 ESDAH---------IQGDAFWLRVEGDSMTAPAGLSIPEGTFVLFDTGREPINGSLVIAK 187 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + + K LI G+ L LN +P+ + + I Sbjct: 188 LSDSNEATFKKLIIDGGQKY-LKGLNPQWPLVPINGN-CRIIG 228 >gi|16765334|ref|NP_460949.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993577|ref|ZP_02574671.1| protein UmuD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|238912429|ref|ZP_04656266.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|137028|sp|P22493|UMUD_SALTY RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD' gi|154413|gb|AAA27247.1| putative [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420532|gb|AAL20908.1| error-prone repair: SOS-response transcriptional repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328407|gb|EDZ15171.1| protein UmuD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247164|emb|CBG24987.1| DNA repair protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993990|gb|ACY88875.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158511|emb|CBW18021.1| DNA repair protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912988|dbj|BAJ36962.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323130277|gb|ADX17707.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988886|gb|AEF07869.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 139 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + + L P + FP+ + + + + + + + K Sbjct: 1 MEFFRPTELREIIPLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAS 57 Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM GD+L+++S+ + GD ++ G+ K L R ++ L+ +N Y Sbjct: 58 GDSMIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRLQLRP--TVQLIPMNGAY 114 Query: 203 PVDTVEMSD-IEWIARI 218 V D ++ + Sbjct: 115 RPIPVGSEDTLDIFGVV 131 >gi|89256052|ref|YP_513414.1| prophage repressor protein [Francisella tularensis subsp. holarctica LVS] gi|156502064|ref|YP_001428129.1| peptidase S24-like domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954234|ref|ZP_06558855.1| prophage repressor protein [Francisella tularensis subsp. holarctica URFT1] gi|295312354|ref|ZP_06803139.1| prophage repressor protein [Francisella tularensis subsp. holarctica URFT1] gi|89143883|emb|CAJ79101.1| prophage repressor protein [Francisella tularensis subsp. holarctica LVS] gi|156252667|gb|ABU61173.1| Peptidase S24-like domain protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 217 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 T +L + +G + P + + +P+ Sbjct: 63 PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 I + Q SM P +G+ ++++ D++++ Sbjct: 105 IPKNSFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209 >gi|322834782|ref|YP_004214809.1| LexA family transcriptional regulator [Rahnella sp. Y9602] gi|321169983|gb|ADW75682.1| transcriptional repressor, LexA family [Rahnella sp. Y9602] Length = 202 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 48/178 (26%), Gaps = 3/178 (1%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R I P+ I L + + + E + Sbjct: 8 QQEVYDLIRDHISTTGMPPTRAEIASRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G E + + D + SM + Sbjct: 68 LLMEEEEGLPLIGRVAAGEPLLAQQHIEGHYQIDPAMFKPSADFLLRVSGMSMRDIGILD 127 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD+L ++ V G ++ + ++ K L + G + L+ N + V++ + Sbjct: 128 GDLLAVHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GSVVQLLPENSEFQPIVVDLRE 183 >gi|145628369|ref|ZP_01784170.1| LexA repressor [Haemophilus influenzae 22.1-21] gi|145630492|ref|ZP_01786272.1| LexA repressor [Haemophilus influenzae R3021] gi|145634840|ref|ZP_01790548.1| LexA repressor [Haemophilus influenzae PittAA] gi|145638455|ref|ZP_01794065.1| LexA repressor [Haemophilus influenzae PittII] gi|145640833|ref|ZP_01796415.1| LexA repressor [Haemophilus influenzae R3021] gi|148826607|ref|YP_001291360.1| LexA repressor [Haemophilus influenzae PittEE] gi|148827939|ref|YP_001292692.1| LexA repressor [Haemophilus influenzae PittGG] gi|229844618|ref|ZP_04464757.1| LexA repressor [Haemophilus influenzae 6P18H1] gi|229845796|ref|ZP_04465908.1| LexA repressor [Haemophilus influenzae 7P49H1] gi|319775310|ref|YP_004137798.1| LexA repressor [Haemophilus influenzae F3047] gi|319897751|ref|YP_004135948.1| lexa repressor [Haemophilus influenzae F3031] gi|329122694|ref|ZP_08251272.1| LexA repressor [Haemophilus aegyptius ATCC 11116] gi|88911349|sp|Q4QME9|LEXA_HAEI8 RecName: Full=LexA repressor gi|166224570|sp|A5UDX6|LEXA_HAEIE RecName: Full=LexA repressor gi|166224571|sp|A5UHQ3|LEXA_HAEIG RecName: Full=LexA repressor gi|144980144|gb|EDJ89803.1| LexA repressor [Haemophilus influenzae 22.1-21] gi|144983882|gb|EDJ91324.1| LexA repressor [Haemophilus influenzae R3021] gi|145268006|gb|EDK08002.1| LexA repressor [Haemophilus influenzae PittAA] gi|145272784|gb|EDK12691.1| LexA repressor [Haemophilus influenzae PittII] gi|145274347|gb|EDK14211.1| LexA repressor [Haemophilus influenzae 22.4-21] gi|148716767|gb|ABQ98977.1| LexA repressor [Haemophilus influenzae PittEE] gi|148719181|gb|ABR00309.1| LexA repressor [Haemophilus influenzae PittGG] gi|229810800|gb|EEP46517.1| LexA repressor [Haemophilus influenzae 7P49H1] gi|229812332|gb|EEP48022.1| LexA repressor [Haemophilus influenzae 6P18H1] gi|301169468|emb|CBW29068.1| DNA-binding transcriptional repressor of SOS regulon [Haemophilus influenzae 10810] gi|309751590|gb|ADO81574.1| SOS-response transcriptional repressor LexA [Haemophilus influenzae R2866] gi|309973755|gb|ADO96956.1| SOS-response transcriptional repressor LexA [Haemophilus influenzae R2846] gi|317433257|emb|CBY81632.1| LexA repressor [Haemophilus influenzae F3031] gi|317449901|emb|CBY86113.1| LexA repressor [Haemophilus influenzae F3047] gi|327472568|gb|EGF17998.1| LexA repressor [Haemophilus aegyptius ATCC 11116] Length = 207 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + + R E + P + ++R+ G E + S + Sbjct: 1 MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +I+ L G G G Sbjct: 54 GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K SM + GD+L ++S V G ++ + Sbjct: 94 AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G I L + N + V + + Sbjct: 154 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 187 >gi|291551243|emb|CBL27505.1| SOS regulatory protein LexA [Ruminococcus torques L2-14] Length = 191 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 37/213 (17%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I+ ++ +PS +A G+ + K + ++ Sbjct: 3 EIKKYIEDYYLQNRQSPSTTKIAEAVGIARGTAYKY----------------LVEMAEKN 46 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + ++ + + S + N V +P Sbjct: 47 MIEYDGQEIRTNVTRKYSGEQTQTPIV-------GSIPCGSPQYEEENIEEYVSLPTAIF 99 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + SM GD++++ ++ N GD ++ K Sbjct: 100 G-------KGDFFILRASGQSMIEAGIDDGDLVVVKKQVEANEGDIVVALVD-NQNTLKR 151 Query: 185 LISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + I L N V + Sbjct: 152 YFRDDENKKIILHPENKKMKDIIV--DECCIQG 182 >gi|318042158|ref|ZP_07974114.1| SOS-response transcriptional repressor LexA [Synechococcus sp. CB0101] Length = 205 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 45/189 (23%), Gaps = 6/189 (3%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I PS + + + + Q +E + L Sbjct: 13 QQELYDWLASFIGEHRHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 72 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + G G G T R + + SM+ Sbjct: 73 LLGELTPGIPVLGAVAAGGLVETFDDVSERIDLAPVLETRG-LFALTVNGDSMVDAHIAD 131 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++++ + G + K G + L + N Y ++ Sbjct: 132 GDVVLMEPVPEPSRLRNGTIVSALVPGSGTTLKHFHR-EGSQVRLEAANPAYEPIVLDAE 190 Query: 211 DIEWIARIL 219 + +++ Sbjct: 191 QVAVQGKLV 199 >gi|221067974|ref|ZP_03544079.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1] gi|221068037|ref|ZP_03544142.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1] gi|220712997|gb|EED68365.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1] gi|220713060|gb|EED68428.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1] Length = 153 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-----RGR 191 + SMLP + GD + ++ + GD + K + + K R Sbjct: 57 AFFLEIDGDSMLPEFNPGDRVRIDPEVTPRPGDFVAAKNSSEESTFKKYRVRGIDLTGKE 116 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIA 216 +L+ LN YPV + +++ I Sbjct: 117 IFELVPLNDNYPVMRSDEHELKVIG 141 >gi|87125458|ref|ZP_01081303.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. RS9917] gi|86166758|gb|EAQ68020.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. RS9917] Length = 209 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 47/192 (24%), Gaps = 8/192 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I + PS + + + + Q +E + L Sbjct: 17 QQELYDWLADYIGSHHHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 76 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153 + G G G T + R + + SM Sbjct: 77 LLGGMASGIPVLGAVAAGGLVETFDDVQERLDLVPLLETRG-LFALTVNGDSMVEAHIAD 135 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++++ G + K G ++ L + N Y + Sbjct: 136 GDVVLMEPVSDPSRLRQGVIVSALVPGSGTTLKHFHR-EGGTVRLEAANPAYAPIELPAD 194 Query: 211 DIEWIARI--LW 220 ++ ++ +W Sbjct: 195 QVQVQGKLMAVW 206 >gi|169796760|ref|YP_001714553.1| putative repressor protein from bacteriophage [Acinetobacter baumannii AYE] gi|169149687|emb|CAM87578.1| putative repressor protein from bacteriophage [Acinetobacter baumannii AYE] Length = 249 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 65/231 (28%), Gaps = 32/231 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + E L + LAR P + K P+ E++ I + Sbjct: 5 SRIRQKLEEKKLRAADLARATKKSPVAVKKWLDGTSV-----PTAENLKVIAKFLGVSDD 59 Query: 71 QLLDLPFSDGRTTEKKE----------KEIPLLYFPPSGSGGFFDSGVFPT--------- 111 LL + + + ++ + + FP Sbjct: 60 WLLYGGPVEQESNNLPQLNVINIEAFKQKYNIPDSEDAVKFVQTSDKPFPIQKRYVPVKA 119 Query: 112 -------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 G + + + + K SM P R G ++ + Sbjct: 120 YSKMGMDGYFTDMGYEGNAGDGYVPTHTAGPRAYGIKGTGDSMFPAIRNGWYVVCDPDAD 179 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + + + + + G K + G + L+++N + +M ++E I Sbjct: 180 LVPTEFVQVCLKDGRCTIKEFVGINGGVLSLLAVNGG-ERLSFDMDEVESI 229 >gi|118430728|ref|YP_873953.1| phage repressor protein [Staphylococcus phage phiNM] gi|151222024|ref|YP_001332846.1| phage repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|297246884|ref|ZP_06930667.1| phage repressor [Staphylococcus aureus A8796] gi|304379058|ref|ZP_07361805.1| phage repressor protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|104641620|gb|ABF73034.1| phage repressor protein [Staphylococcus aureus phage phiNM1] gi|150374824|dbj|BAF68084.1| phage repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|297176278|gb|EFH35562.1| phage repressor [Staphylococcus aureus A8796] gi|304342293|gb|EFM08185.1| phage repressor protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 212 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 26/216 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + L+ +A+K + + + E P + KI + N + L Sbjct: 7 IKEIRLNNRLSKVEMAKKLDVSEGTIRMWESGRTE-----PRMGMVEKISSLFNVSKGYL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L E E+P +G+ + VP Sbjct: 62 LGEIEEIVLPEFDSEIEVPYFGKVSAGNFEEVAIDN-------EKLKVPPFAFNGRK--- 111 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTGDIVAKVLIS 187 ++ K SM + G +I++ ++N D L+++ G+ K + Sbjct: 112 -PSECIALKINGDSMNKILANGSYIIVHDYRKSCDHKLNSNDILVLR-LGGEYTVKRVRR 169 Query: 188 RRGR-SIDLMSLNCCYPVDTVEM---SDIEWIARIL 219 + +D S + + ++ ++ +IE I +++ Sbjct: 170 TETKLHLDPASYSDEFKTNSYDLDSIDEIEVIGKVI 205 >gi|116072386|ref|ZP_01469653.1| Peptidase S24, LexA repressor [Synechococcus sp. BL107] gi|116064908|gb|EAU70667.1| Peptidase S24, LexA repressor [Synechococcus sp. BL107] Length = 209 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 51/191 (26%), Gaps = 8/191 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 I PS + + L + +L L T ++ + Sbjct: 15 QQELYDWLADYIGTHRHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 74 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151 L + S G G G +T + + + SM+ Sbjct: 75 LLGDVAASVGIPVLGAVAAGGLVDTFDDVQDHLDLAPVLETRG-LFALTVNGDSMVDAHI 133 Query: 152 RKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 GD++++ I G + K + ++ L + N Y + Sbjct: 134 ADGDVVLMEPVIDPQRLRDGTVVSALVAGSGTTLKHFHRQGP-TVVLEAANPAYSPIELP 192 Query: 209 MSDIEWIARIL 219 ++ +++ Sbjct: 193 AEQVQVQGKLV 203 >gi|68249346|ref|YP_248458.1| LexA repressor [Haemophilus influenzae 86-028NP] gi|260579840|ref|ZP_05847670.1| LexA repressor [Haemophilus influenzae RdAW] gi|260583155|ref|ZP_05850935.1| LexA repressor [Haemophilus influenzae NT127] gi|68057545|gb|AAX87798.1| LexA repressor [Haemophilus influenzae 86-028NP] gi|260093124|gb|EEW77057.1| LexA repressor [Haemophilus influenzae RdAW] gi|260093773|gb|EEW77681.1| LexA repressor [Haemophilus influenzae NT127] Length = 209 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + + R E + P + ++R+ G E + S + Sbjct: 3 MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +I+ L G G G Sbjct: 56 GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVAAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K SM + GD+L ++S V G ++ + Sbjct: 96 AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G I L + N + V + + Sbjct: 156 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 189 >gi|293394069|ref|ZP_06638372.1| LexA repressor [Serratia odorifera DSM 4582] gi|291423431|gb|EFE96657.1| LexA repressor [Serratia odorifera DSM 4582] Length = 202 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++++ I + + P + +A + G R P+ Sbjct: 1 MKALTTRQQEVYDLIRDHISQTGMPPTRAEIALRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIVSGASRGIRLLMEDEDGLPLIGRVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 90 AQQHIEGHYKVDPSLFKPNADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L G ++L+ N + V++ Sbjct: 150 -EDEVTVKRLKKH-GNVVELLPENSEFQPIVVDLRQ 183 >gi|332288839|ref|YP_004419691.1| LexA repressor protein [Gallibacterium anatis UMN179] gi|330431735|gb|AEC16794.1| LexA repressor protein [Gallibacterium anatis UMN179] Length = 213 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 34/218 (15%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++++ + + E+ + P + +A++ G R+ + E + + Sbjct: 13 QQQVFDFVKQHLEQTGMPPTRAEIAKQLGF---------------RSANAAEEHLKALAR 57 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T + + I + G G G E Sbjct: 58 K----------GVIEIVSGTSRGIRLIGEVEAANDEQEGLPLVGRVAAGEPILAEEHIEA 107 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + D K Q SM + GD+L ++S V G ++ + + Sbjct: 108 MYQVDVNMFKPKADFLLKVQGMSMKDIGILDGDLLAVHSTKDVRNGQVVVARIGDN-VTV 166 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 K + G + L N V++S +IE IA Sbjct: 167 KRFERK-GNMLYLHPENSELSPIVVDLSQENVEIEGIA 203 >gi|213021398|ref|ZP_03335845.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 105 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + D + SM + GD+L ++ V G ++ + ++ K Sbjct: 1 YQVDPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID-DEVTVK 59 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD 211 L + G ++L+ N + V++ + Sbjct: 60 RLKKQ-GNKVELLPENSEFTPIVVDLRE 86 >gi|261867094|ref|YP_003255016.1| LexA repressor [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412426|gb|ACX81797.1| LexA repressor [Aggregatibacter actinomycetemcomitans D11S-1] Length = 207 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 35/224 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + +++++ + E + P+ +A + + +++ Sbjct: 1 MKPLTARQQEVYDFLKHHLETTGMPPT----RAEISK------ELGFRSPNAAEEHLKAL 50 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K + LL G G G Sbjct: 51 AK---------------KGVIEIVSGTSRGIRLLLEDHSQEEAGLPLIGRVAAGEPILAE 95 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + D K SM + GD+L ++S V G ++ + Sbjct: 96 QHIEGTYHVDPNMFKPQADFLLKVYGQSMKDVGILDGDLLAVHSTKDVRNGQIVVARI-E 154 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216 ++ K L + G + L + N + V ++ +IE IA Sbjct: 155 DEVTVKRLERK-GSVVYLHAENEEFSPIVVNLTQPTHFEIEGIA 197 >gi|302342949|ref|YP_003807478.1| peptidase S24/S26A/S26B, conserved region [Desulfarculus baarsii DSM 2075] gi|301639562|gb|ADK84884.1| Peptidase S24/S26A/S26B, conserved region [Desulfarculus baarsii DSM 2075] Length = 142 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 3/124 (2%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKG 154 GV G V E + + + + TSM+ G Sbjct: 11 IDIQDVEIPFMGVVAAGMPIEAVP-EERAIAIPKDMVGRFRTFALEVRGTSMIDEHIAPG 69 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 D++++ G ++ D+ K R I L N + D+ Sbjct: 70 DVIVVEERQTAENGQMVVALINQSDVTLKKFYLERD-HIRLQPANPGMEPIILRHEDVRV 128 Query: 215 IARI 218 + + Sbjct: 129 LGVV 132 >gi|324993047|gb|EGC24967.1| phage transcriptional repressor [Streptococcus sanguinis SK405] gi|324995644|gb|EGC27556.1| phage transcriptional repressor [Streptococcus sanguinis SK678] gi|325689837|gb|EGD31841.1| phage transcriptional repressor [Streptococcus sanguinis SK115] gi|327461315|gb|EGF07646.1| phage transcriptional repressor [Streptococcus sanguinis SK1] gi|327473953|gb|EGF19366.1| phage transcriptional repressor [Streptococcus sanguinis SK408] gi|327489174|gb|EGF20967.1| phage transcriptional repressor [Streptococcus sanguinis SK1058] gi|332366568|gb|EGJ44313.1| phage transcriptional repressor [Streptococcus sanguinis SK1059] Length = 257 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + L+R+ G+ ++ + P ++ KI + Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFDVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111 + ++ ++ + + FP Sbjct: 74 VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + + + + D + S+ P Y D + L Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|183220706|ref|YP_001838702.1| LexA repressor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910807|ref|YP_001962362.1| LexA repressor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|229621214|sp|B0SFV4|LEXA_LEPBA RecName: Full=LexA repressor gi|229621215|sp|B0SPA2|LEXA_LEPBP RecName: Full=LexA repressor gi|167775483|gb|ABZ93784.1| Repressor lexA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779128|gb|ABZ97426.1| LexA repressor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 202 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 53/224 (23%), Gaps = 33/224 (14%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + K+ + + I P+ + + G+ Sbjct: 1 MKDLTEKQEFVLQYISDTVREKGFPPTIREIGDQFGITAK-----------------GAY 43 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + + E + P + + N Sbjct: 44 DHLKAIEKKGYIRTSKNQSRAIELLKGNADEALLVRASGIPLLGQVAAGAPILAEENIEE 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + VP+ A + + + SM GDI I+ G+ ++ Sbjct: 104 YIAVPDDL-------ATKPGTFALRVKGDSMVEAGISDGDIAIIQKKDTARNGEIVVALI 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + KV I L N + + I +++ Sbjct: 157 -ENEATLKVFFKEPD-MIRLEPRNAKLKPIRTKKA--TIIGKLI 196 >gi|256822330|ref|YP_003146293.1| peptidase S24 and S26 domain-containing protein [Kangiella koreensis DSM 16069] gi|256795869|gb|ACV26525.1| peptidase S24 and S26 domain protein [Kangiella koreensis DSM 16069] Length = 140 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 6/109 (5%) Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 G + + S + K + SM+ + DIL+++ ++ D Sbjct: 29 GVVDEHME--DTLSLDQLLIQNPATTFFAKVEGDSMIGAGIFQNDILVVDRSLTAKDKDV 86 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K L ++ L + N Y + I ++ Sbjct: 87 VVAMLD-NEFTVKRLC--TSGALRLQAENPAYQDILITGESELVIWGVV 132 >gi|168206983|ref|ZP_02632988.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170661637|gb|EDT14320.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 368 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 36/241 (14%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + +DR R N T L L N+ +R + + K Sbjct: 128 SKLRIDRTLTELDRAINRANRTKEDL----NLSLRRVNRLYDDLKRTNSREERFDKLVKQ 183 Query: 62 LAATNETICQLLDLPFSDGR---------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPT- 111 L ++ + + D + ++ ++ +L F P Sbjct: 184 LDDISKNLNPNFENDIIDMTDIEISTDLVPSVEELRKNKILEFKNKSKESNSKYIRIPIL 243 Query: 112 ------------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 N + + +P G ++ K + SM L+ G+++I+ Sbjct: 244 GVVAAGNPSYACENILDNIYLP------KGNFSSSFTYFGLKVKGDSMNELFEDGEVIII 297 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIAR 217 V+ D ++ + K I+L+ N + + +++ I Sbjct: 298 RKTSLVHNDDIVIAF-VGDEATCKEYYYDGNN-INLIPHSTNSKHKKQVYSVDEVKIIGL 355 Query: 218 I 218 + Sbjct: 356 V 356 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 22/217 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +K+ + I + + +NLT LA K + + + + E P+ ++ N Sbjct: 4 EKLAKIIKKYRKDNNLTQQQLAEKLDISRSVLSYYENTNAE-----PNLYFLYNFSRLLN 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 TI +L+D + + + S + + + + Sbjct: 59 CTIDELVDSADIFDDFSLSQTPQNEFEPIKKSKTKV--KEDTLNINDGQKFLKEIKNMLN 116 Query: 127 HNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQVNCGDRLL-------IKPRT 177 + ++ + T + + + + + +RL + Sbjct: 117 KVKKTYDELNYSKLRIDRTLTELDRAINRANRTKEDLNLSLRRVNRLYDDLKRTNSREER 176 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 D + K L LN + D ++M+DIE Sbjct: 177 FDKLVKQLDDISKN------LNPNFENDIIDMTDIEI 207 >gi|254514471|ref|ZP_05126532.1| LexA repressor [gamma proteobacterium NOR5-3] gi|219676714|gb|EED33079.1| LexA repressor [gamma proteobacterium NOR5-3] Length = 200 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 40/217 (18%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I R + P + +AR G + + E Sbjct: 1 MLKLTARQEQVLDVIRRHIGDTGMPPTRADIARDLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA G G G Sbjct: 45 EHLKALARKGAIEIIPGASRGIRLPE-----------------DVGLPIIGRVAAGQPIL 87 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + Q SM+ + GD+L ++S G ++ + Sbjct: 88 ATENVEEHCAVDPSLFHPPADYLLRVQGDSMIKVGIHDGDLLAVHSTPVAENGAIVVARI 147 Query: 176 RTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L R R + L+ N V+++ Sbjct: 148 D-DEVTVKRLKRGRDKRHLQLLPENDALSPIDVDLAQ 183 >gi|198283651|ref|YP_002219972.1| transcriptional repressor, LexA family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665531|ref|YP_002426282.1| LexA repressor [Acidithiobacillus ferrooxidans ATCC 23270] gi|226694230|sp|B5EJ91|LEXA_ACIF5 RecName: Full=LexA repressor gi|226736095|sp|B7JBX0|LEXA_ACIF2 RecName: Full=LexA repressor gi|198248172|gb|ACH83765.1| transcriptional repressor, LexA family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517744|gb|ACK78330.1| LexA repressor [Acidithiobacillus ferrooxidans ATCC 23270] Length = 205 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 53/191 (27%), Gaps = 8/191 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 + R + + P+ + + + + + + + Sbjct: 8 QSEILAWIRARMAEDSLPPTRAELMRAFDFRSPNAAESHLRVLARKGYILLQSGTARGIR 67 Query: 95 F-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YR 152 G G G E + P + D + Q SM Sbjct: 68 LCASEEETGLPLIGRVAAGQPMLAEEFREGQLPVDPKLFSPGADYLLRVQGMSMRDAGIL 127 Query: 153 KGDILILNSAI--QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM- 209 GDIL + + G ++ + G++ K G+ + L+ N + +V++ Sbjct: 128 DGDILAVRHDASLTLQDGQMVVARVN-GEVTVKRWKRD-GKQVWLLPENPDFSPISVDLQ 185 Query: 210 -SDIEWIARIL 219 + ++ Sbjct: 186 RDSLTIEGVVV 196 >gi|123966252|ref|YP_001011333.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9515] gi|123200618|gb|ABM72226.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9515] Length = 143 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 4/103 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + + + + + SM+ + D++I++ ++ G+ ++ Sbjct: 36 YTEENIDLNEHLISNPFSTFFLRVKGDSMINSGIKDKDLIIVDKSLTAKPGNIIIAMID- 94 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G+ K L S R + L + N YP + DI+ ++ Sbjct: 95 GEFTIKRL-SIRNNELYLKAENHNYPDFSFRNHVDIQIWGVVI 136 >gi|330985166|gb|EGH83269.1| repressor protein cI [Pseudomonas syringae pv. lachrymans str. M301315] Length = 279 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 57/210 (27%), Gaps = 14/210 (6%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 L +A + G+ P + ++ S ++ ++L Sbjct: 68 ELKLNKRKIADEIGVSPAAVAHYLSGVNALNVKFAS--ALARLLGEP-VDRFSPRLAAEI 124 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSPHNGIYAIQT 135 + + P + + G + + + Sbjct: 125 ADLAATTDHSNVTPMVQPRREAREYPLITWVDAGAGIESAGSYPLGISDEWLSSTENAGP 184 Query: 136 QDTRHKTQDTSML----PLYRKGDILILNSAI-QVNCGDRLLIKPR-TGDIVAKVLISRR 189 + + SM P + +G +++ + G + + TG+ K I Sbjct: 185 SGYWLRVKGKSMTSDTPPTFPEGTPILVRPEGFDIISGKFYVARHTVTGETTFKQYI-LD 243 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L+ LN Y VE D E I R + Sbjct: 244 AGVGYLVPLNQAYQTVQVE-GDWEIIGRAI 272 >gi|197122553|ref|YP_002134504.1| transcriptional repressor, LexA family [Anaeromyxobacter sp. K] gi|229495163|sp|B4UCX8|LEXA_ANASK RecName: Full=LexA repressor gi|196172402|gb|ACG73375.1| transcriptional repressor, LexA family [Anaeromyxobacter sp. K] Length = 230 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 20/231 (8%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKSKRFGIEGR--NRWP 53 M + ++ I E H P+ + + T+ N + +R P Sbjct: 1 MEGLTDRQLEVLRFIASQIEDHGYPPTIREIGEALDIRSTNGVNDHLKALERKGYLSRDP 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + ++ AA D + + + P + Sbjct: 61 VKSRALIPTSAAREALGGGGGDAGSNVVPLVRGPARPGSRMIEIPIVGRVAAGMPILAQE 120 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRL 171 +TV V + + + Q SM+ GD + + + + G+ + Sbjct: 121 RVEDTVQVDA------FLLGTNKKVYGLRVQGDSMIGDGILPGDYVFVKKQLNADDGEIV 174 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 + + K + G + N V SD + ++ Sbjct: 175 VAMID-DEATVKRVYF-EGDRVRFQPSNPRMAPIYVRHSDFRSTMILGVVV 223 >gi|323351709|ref|ZP_08087363.1| phage transcriptional repressor [Streptococcus sanguinis VMC66] gi|322122195|gb|EFX93921.1| phage transcriptional repressor [Streptococcus sanguinis VMC66] Length = 257 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 64/232 (27%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + L+R+ G+ ++ + P ++ KI Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111 + ++ ++ + + FP Sbjct: 74 VEEIDPRYRLIADIPQRFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + + + + D + S+ P Y D + L Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPTG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|125717860|ref|YP_001034993.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497777|gb|ABN44443.1| Transcriptional repressor, XRE family, putative [Streptococcus sanguinis SK36] Length = 257 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + L+R+ G+ ++ + P ++ KI + Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIASFFKVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--------FDSGVFPTGNKWNTVGV 120 I ++ ++ + K + Sbjct: 74 IEEIDPRYRLIADIPQQFPDLNRIYQQLDQNRQEQGLKLLEASLTEQETKASLKDDYFPY 133 Query: 121 ------------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 PE I D + S+ P Y D + L Sbjct: 134 LVYENYYLSQHKPEQADLVWLDREID-YDIALWVRTDSLEPKY-PRDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHGEEPKLIGRVM 242 >gi|104781524|ref|YP_608022.1| LexA repressor [Pseudomonas entomophila L48] gi|95110511|emb|CAK15219.1| putative LexA repressor 2 [Pseudomonas entomophila L48] Length = 202 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K+ I + I PS +A + G S + Sbjct: 1 MDNLTPKRRAILDFIRERITDQAQPPSLADIAERFGFASRSVAR---------------- 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + A + + + G + + +L P G P G + Sbjct: 45 ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILELPVLGQVA----AGAPIGPDLD 97 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + +T D K + SM GD++ + G ++ + Sbjct: 98 IHE----QLLLDPSLFRRTPDYLLKVRGDSMVDDGIFDGDLVGIRQQGDARDGQIVVARL 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R L+ N Y V Sbjct: 154 D-GEVTIKRLQRTREG-YRLLPRNPHYQPIDVGPER 187 >gi|56477174|ref|YP_158763.1| LexA repressor [Aromatoleum aromaticum EbN1] gi|71648697|sp|Q5P4A1|LEXA_AZOSE RecName: Full=LexA repressor gi|56313217|emb|CAI07862.1| LexA-SOS-response transcriptional repressor (RecA-mediated autopeptidases) [Aromatoleum aromaticum EbN1] Length = 203 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 9/187 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 R +E R P+ I + + + +E + Sbjct: 12 QAEILDFIRHTVESEGRPPTRAEICTAFGFRSPNAAETHLRTLAAKGAIVLEEGRARGIR 71 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + G G G V E R + D + + SM Sbjct: 72 LVEAL--GLPLVGHVAAGRPMLAVEHIEARYQIDSALFSPRADYLLRVRGMSMRDAGIID 129 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--- 210 D+L ++ QV G ++ + ++ K + L+ N + V+ Sbjct: 130 SDLLAVHRTPQVRAGQVVVAR-LEDEVTVKTFTREGP-IVRLLPANPDFEPIVVDTRHQA 187 Query: 211 -DIEWIA 216 DIE IA Sbjct: 188 LDIEGIA 194 >gi|289807247|ref|ZP_06537876.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 102 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + D + SM + GD+L ++ V G ++ + ++ K L Sbjct: 1 DPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID-DEVTVKRLK 59 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD 211 + G ++L+ N + V++ + Sbjct: 60 KQ-GNKVELLPENSEFTPIVVDLRE 83 >gi|187931404|ref|YP_001891388.1| prophage repressor protein [Francisella tularensis subsp. mediasiatica FSC147] gi|187712313|gb|ACD30610.1| prophage repressor protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 217 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRVGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 T +L + +G + P + + +P+ Sbjct: 63 PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SM P +G+ ++++ D++++ Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209 >gi|331001378|ref|ZP_08325001.1| peptidase S24-like protein [Parasutterella excrementihominis YIT 11859] gi|329568600|gb|EGG50403.1| peptidase S24-like protein [Parasutterella excrementihominis YIT 11859] Length = 218 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 7/169 (4%) Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + +L +I + P+ G Sbjct: 45 TDKLVPVFKQLGGAKWLRCELERVAEPARTLDTDQILVPAMNPTHLSIPVYECGVQAGFP 104 Query: 115 WNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + SM L +GD+L+++ + + GD ++ Sbjct: 105 SPAESYIDKTLDLNEYLVSNPASTFCVYVTGDSMDLAGMDEGDLLVVDRSPEPKNGDIVI 164 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPVD-TVEMSDIEWIARI 218 + K + + + L+ N Y + + +I + Sbjct: 165 -MSINNEFTVKRYMKD-DKGLRLLPESSNPIYKPILPKDYDEWRFIGVV 211 >gi|318041288|ref|ZP_07973244.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CB0101] Length = 146 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM+ + GD+L+++ +++ G ++ Sbjct: 33 ADDYID--AGIDLNEALIRHPSSTFFLRVSGDSMIDAGIQHGDLLVVDRSLEPRPGLIVV 90 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G K L+ + L + N YP + D++ Sbjct: 91 AVLD-GAFTLKRLVRYH-GRLRLEAANSAYPPLELHQCGDVQI 131 >gi|167627547|ref|YP_001678047.1| prophage repressor protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597548|gb|ABZ87546.1| prophage repressor protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 217 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQVELAQKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLEDNYY 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + T+ +P+L + +G + P + + +P Sbjct: 63 PND------TSIVAIANVPVLSYVQAGEFTESQESIDP----IDYLQIPHSL-------- 104 Query: 133 IQTQDTRHKTQDTSML----------P-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SML P +G+ ++++ + D++++ Sbjct: 105 VPKNGFSLRVQGESMLYDSSESQLLSPKYAKYTLYEGENILVDPSEISPQNLVDKIVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPTDAVIIGRVV 209 >gi|15801531|ref|NP_287548.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 EDL933] gi|189402521|ref|ZP_02783039.2| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4401] gi|189406246|ref|ZP_02827173.2| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC508] gi|209400263|ref|YP_002270589.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4115] gi|217329755|ref|ZP_03445833.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. TW14588] gi|254793132|ref|YP_003077969.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. TW14359] gi|261226559|ref|ZP_05940840.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. FRIK2000] gi|261259495|ref|ZP_05952028.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. FRIK966] gi|12515039|gb|AAG56160.1|AE005346_7 putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EDL933] gi|189355076|gb|EDU73495.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4401] gi|189375812|gb|EDU94228.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC508] gi|209161663|gb|ACI39096.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4115] gi|217317247|gb|EEC25677.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. TW14588] gi|254592532|gb|ACT71893.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. TW14359] Length = 212 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 62/208 (29%), Gaps = 21/208 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT- 65 + I E I + NL L G S ++ G +R+ S S+ KIL Sbjct: 4 QTISERITQRMHALNLKGKDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILKVNE 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 N + + K +PLL + S + + I S Sbjct: 62 NWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSSITS 108 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + I + SM G + ++ V G+ +L P+ Sbjct: 109 CVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRIVQPGNIVLALPKGTTT 168 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVE 208 + G I L+ N YP ++ Sbjct: 169 PVIRKLEIEGPDILLVPTNPRYPSIMLD 196 >gi|220906662|ref|YP_002481973.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC 7425] gi|219863273|gb|ACL43612.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC 7425] Length = 209 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 60/227 (26%), Gaps = 35/227 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + K++++ + +RH PS + + L + +S+ + Sbjct: 1 MQPLTDPQKQLFDWLVDYIDRHQYAPSIRQMMQAMDLKSPAPVQSR------------LD 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K + + + G G G Sbjct: 49 HLRK-------------KGYIDWKDGQARTIRILQHPNGKSGQFEGIPLMGAIAAGGLIE 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV---NCGDRLL 172 R ++ Q + SM L +GDI+++ G + Sbjct: 96 PYADSVERLDLGSLFNQP-QYFALRVTGDSMIEELITEGDIVVMQPVNDPSSLKNGTIVA 154 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + GR + L N Y V S + +++ Sbjct: 155 ALVEGEGTTLKRFFRQ-GRQVTLQPGNPKYDPIKVTASKVRVQGKLV 200 >gi|241668114|ref|ZP_04755692.1| prophage repressor protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876649|ref|ZP_05249359.1| prophage repressor protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842670|gb|EET21084.1| prophage repressor protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 217 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQVELAQKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLEDNYH 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + T+ +P+L + +G + P + + +P Sbjct: 63 PND------TSIVAIANVPVLSYVQAGEFTESQEIIDP----IDYLQIPHSL-------- 104 Query: 133 IQTQDTRHKTQDTSML----------P-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SML P +G+ ++++ + D++++ Sbjct: 105 VPKNGFSLRVQGESMLYDSSESQLLSPKYAKYTLYEGENILVDPSEISPQNLVDKIVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPTDAVIIGRVV 209 >gi|308185816|ref|YP_003929947.1| Repressor protein CI [Pantoea vagans C9-1] gi|308056326|gb|ADO08498.1| Repressor protein CI [Pantoea vagans C9-1] Length = 243 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 54/199 (27%), Gaps = 15/199 (7%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE-KKEKEIP 91 + K P ++ + + L Sbjct: 44 ISTPGVWKWFNAQSV-----PDGGNLLALSQLLGVRVEWLQYGMEQPADPVTLSTFTGHK 98 Query: 92 LLYFPPSGSGGFFDSGVFPTGN----KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 ++ S G + P + + + SM Sbjct: 99 NVFRVDSLDIGQRSAAGLPARDEFVETIQAIEYGLDEARVLFNGRPAENIRLIAINSDSM 158 Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 + D L ++ ++++ GD + I + K L + + I ++S N Y + Sbjct: 159 ADTFAPRDQLFVDISVRMFDGDGIYIFTLDEQLYLKRLQLQH-KKIAVISDNKRYETWYL 217 Query: 208 EMSDI---EWIARILWASQ 223 D+ + +A+++ SQ Sbjct: 218 NHDDVTSLKVLAKVIM-SQ 235 >gi|82524059|emb|CAJ18231.1| SOS-response transcriptional repressor [uncultured Bacteroidetes bacterium] Length = 145 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 5/108 (4%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + + SM+ GDI +++ +++ D ++ Sbjct: 32 EDYLHDSLDFNRDLIRHPEATFYGRVDGDSMVDAGICDGDIAVIDRSVEPQHNDVIV-AY 90 Query: 176 RTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILW 220 G+ K L + I+L N + ++ +D E ++W Sbjct: 91 VNGEFTIKYLDLSHKEEGFIELRPANQNFKPIRIDANDKFEVWGVVVW 138 >gi|324990806|gb|EGC22741.1| phage transcriptional repressor [Streptococcus sanguinis SK353] gi|325687965|gb|EGD29985.1| phage transcriptional repressor [Streptococcus sanguinis SK72] Length = 257 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + L+R+ G+ ++ + P ++ KI + Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFDVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111 + ++ ++ + + FP Sbjct: 74 VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + + + + D + S+ P Y D + L Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|315226410|ref|ZP_07868198.1| SOS mutagenesis and repair protein UmuD [Parascardovia denticolens DSM 10105] gi|315120542|gb|EFT83674.1| SOS mutagenesis and repair protein UmuD [Parascardovia denticolens DSM 10105] Length = 137 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 2/102 (1%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 S + SM GD+LI++ ++ D ++ Sbjct: 21 YFDGDFSFDENVIIHPDTTFIVTVAGDSMQGAGIFDGDLLIVDRSLPAQENDVVIAAID- 79 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L+ + + L N YP + I ++ Sbjct: 80 GELTVKRLVIDQEGNPVLHPENPSYPDIHLYWEADALIWGVV 121 >gi|311746355|ref|ZP_07720140.1| transcriptional regulator [Algoriphagus sp. PR1] gi|311302506|gb|EFQ79223.1| transcriptional regulator [Algoriphagus sp. PR1] Length = 236 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 62/206 (30%), Gaps = 19/206 (9%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86 +A + + T + + E P ++ K+ + +LL+ + Sbjct: 1 MADQLAVQRTMISAYEDGRSE-----PKLLTLKKLSDMLEVGVEELLEHDIEKLGRRAIQ 55 Query: 87 EKEIPLLYFP-PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-----TQDTRH 140 ++++ +L + + + + Sbjct: 56 KRKLNILTIATDANDNENITMVPQKASAGYLNGFADPEYIEELPQFHLPNLPKNATYRAF 115 Query: 141 KTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTGDIVAKVL--ISRRGRSIDLM 196 + SMLPL ++ ++ + G ++ +T +V K + + L+ Sbjct: 116 ELAGDSMLPLIPGTIVIGEYVDQLTNIKSGKTYVLVTQTEGVVYKRVFNYLSENGKLFLV 175 Query: 197 SLNCCYPVDTVEMSDIEWIARILWAS 222 S N Y V+ D+ +W S Sbjct: 176 SDNEHYKPFEVKGEDVLE----VWES 197 >gi|332361394|gb|EGJ39198.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 257 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 63/228 (27%), Gaps = 21/228 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI----------------EGRNRW 52 I + + + + L+R+ G+ ++ + E + Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTSLPIAANLEKIASFFEVEVKEID 78 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 P I I + L + K + + + Sbjct: 79 PRYRLIADIPQQFPDLNRIYQQLDQNRQEQGLKLLEASLTEQETQASLKDDYFP-YLVYE 137 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 N + + PE I D + S+ P Y + + ++ G + Sbjct: 138 NYYLSQHKPEQADLVWLDREID-YDIALWVRTDSLEPKYPRDSVALIEQTHFELAG-AIY 195 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G + K + + I L+SLN Y + + + I R++ Sbjct: 196 AIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|332298754|ref|YP_004440676.1| SOS-response transcriptional repressor, LexA [Treponema brennaborense DSM 12168] gi|332181857|gb|AEE17545.1| SOS-response transcriptional repressor, LexA [Treponema brennaborense DSM 12168] Length = 204 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 52/221 (23%), Gaps = 32/221 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ I +E ++ P+ A G+ + Sbjct: 1 MKELTDKQQQVLNFIRSYSEENSCPPTFRECAEHFGISLRAVQCHF-------------- 46 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L + + ++ + P + N Sbjct: 47 ---AALQKKGCLSQPDKRSRSIRVLIDDPESEKKAAVTRVPLLGTVAAGKPLLCEENLDG 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 V + E Y + + SM+ GDI ++ G ++ Sbjct: 104 YVSLAEPFVRSGRTY------FALRVRGCSMINAGILDGDIAVIEQCETARNGQIVVAVL 157 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 I K I L N + + D+ + Sbjct: 158 D-ESITLKRFYK-EACRIRLQPENPDFKPIYCQ--DVRVVG 194 >gi|255066373|ref|ZP_05318228.1| putative repressor protein [Neisseria sicca ATCC 29256] gi|255049253|gb|EET44717.1| putative repressor protein [Neisseria sicca ATCC 29256] Length = 213 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 8/163 (4%) Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++ L P S + + ++ L + G P + V Sbjct: 47 RRLEEDYGMGPYYLDSTPNSPIGSDDDQQIRFERLNIEAACGNGI---ENLPAE-VVDYV 102 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + + + SM +GD++ +++A+ D + + + Sbjct: 103 NVSRLWAKDKFGGNL-SHIKIITARGDSMAGTIDEGDVIFVDTAVTEMVEDGVYLIHVSD 161 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARI 218 + AK L + ++S N Y +TV ++ ++ +I Sbjct: 162 GLRAKRLQRTVTGGVKILSDNKRYETETVEKHDLEQLKICGKI 204 >gi|237746242|ref|ZP_04576722.1| transcriptional activator-regulatory protein [Oxalobacter formigenes HOxBLS] gi|229377593|gb|EEO27684.1| transcriptional activator-regulatory protein [Oxalobacter formigenes HOxBLS] Length = 235 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 23/228 (10%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++++ +A+ +++ P L + G S + G+ + ++ + A Sbjct: 5 NERLSKALIARSKK----PVDLVKATGKSAASISGWLN----GQTKMIEADNAMLVCAFL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT--GNKWNTVGVPEI 123 + L+ G E + FD G PEI Sbjct: 57 RISPWWLMFGKGKSGLEEELPTFAEQAVAIRNPDEEAVFDVLDVVAVCGPGRINPDYPEI 116 Query: 124 RS----PHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 P Y + Q Q + SM+P + DIL +++++ G+ + I Sbjct: 117 IRSIVMPITEAYNLIGTRNTQGQIKIITAGNDSMVPTIKPSDILFVDTSVTQYSGEAVYI 176 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL 219 G+++ K L G+ + + S N Y + D + + +++ Sbjct: 177 LVHGGELICKRLSLL-GKDLIVSSDNKFYGSWNWKDKPDDTQIVGKVI 223 >gi|86149763|ref|ZP_01067992.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151693|ref|ZP_01069907.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|85839581|gb|EAQ56841.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841322|gb|EAQ58570.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|313116387|gb|ADR32195.1| phage repressor protein, putative [Campylobacter jejuni] Length = 224 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 27/196 (13%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + P + + + E + KI N ++ + R + + Sbjct: 29 IKPNTLSTWRTRNTIP------YELLLKISKEQNISLDSIFFGK---MRINDDNLQLRYY 79 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT--QDTRHKTQDTSMLPL 150 + G +S + + + + + K SM P Sbjct: 80 TDVAAAAGYGAINSKL-------EYTEIVISKKFACEALGLPPLTRLDIIKVIGDSMEPF 132 Query: 151 YRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVD 205 GD++ ++ + V GD ++ G+I K L+ + I L S+N Y Sbjct: 133 IHNGDVIAVDVSKNKLELVKNGDIVV-INLDGEIYCKKLLKQPFVNEIVLSSMNSFYKDI 191 Query: 206 TVEMSDI---EWIARI 218 V + I E I + Sbjct: 192 VVNIDQISCAEIIGVV 207 >gi|311234974|gb|ADP87828.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio vulgaris RCH1] Length = 201 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + ++ I + SML GD+L+++ A+ G R++ Sbjct: 92 ADDYID--RSLDLNDHIVKHPAATFYVRASGESMLGAGVHDGDLLVVDRALDPRPG-RVV 148 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218 I G++ K L+ G + L N YP + D+E + Sbjct: 149 IAAVDGELTVKRLVR-EGGRLLLAPENAAYPPLDITGREDVEVWGVV 194 >gi|254448318|ref|ZP_05061780.1| protein ImpA [gamma proteobacterium HTCC5015] gi|198262185|gb|EDY86468.1| protein ImpA [gamma proteobacterium HTCC5015] Length = 160 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 3/101 (2%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + ++ + A + Q SM GDIL+++ A GD ++ G Sbjct: 49 LESRLDLNDLLIARPAATFYLRYQGDSMRDAGLHPGDILVVDRAESPRHGDIVVAVVD-G 107 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K L R I L + + +P + I ++ Sbjct: 108 EMTCKRLY-NRAGLIRLDAEHPEFPNIELRQDSELVIWGVV 147 >gi|218960575|ref|YP_001740350.1| hypothetical protein CLOAM0236 [Candidatus Cloacamonas acidaminovorans] gi|167729232|emb|CAO80143.1| hypothetical protein CLOAM0236 [Candidatus Cloacamonas acidaminovorans] Length = 254 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 67/232 (28%), Gaps = 29/232 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + + + NL K G+ S ++ K R+P + + +++ A Sbjct: 16 NDIGSRLGMLIKSMNLKQYQFTEKFGISANSLDRYKNNE-----RFPDPQFLARLIDAGV 70 Query: 67 ETICQLLDLPFSDGRTTEK----------------KEKEIPLLYFPPSGSGGFFDSGVFP 110 L + K + + F Sbjct: 71 NVNWLLRGEGSMFILAPWELGDDIRTTKKVQIVDGKPVLVNDFDTTYIRTSLFPIVAEIS 130 Query: 111 TGNKWNTVG--VPEIRSPHNGIYAIQTQD--TRHKTQDTSMLPLYRKGDILILNSAIQVN 166 G+ + P Y D + SM P GDI+++ I + Sbjct: 131 AGSPMDVPEGIEPAESVEVPTRYIPYGTDSYVAFRINGQSMEPQILHGDIVLIKKQITWD 190 Query: 167 --CGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSDIEWI 215 G ++ TG I K + R + L LN Y ++ ++ +W+ Sbjct: 191 GLDGKICAVRYETG-ITLKRIQYDEARRGVALQPLNKDYRIEFIDADQSQWL 241 >gi|120603324|ref|YP_967724.1| phage repressor [Desulfovibrio vulgaris DP4] gi|120563553|gb|ABM29297.1| putative phage repressor [Desulfovibrio vulgaris DP4] Length = 232 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 65/233 (27%), Gaps = 15/233 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------- 55 + +++E I T LA + +S + +KR + + Sbjct: 1 MSTFDEVFERIKLATNTR--TQVELAEVLDIRQSSISDAKRRNSVPSDWYMKLFEKFGLN 58 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + K Q + + ++ S F G N Sbjct: 59 PDWLKKGSGPMYLRTDQGYEPLDAPVAGLVLEDPARYGDPDAKSSVATVFAMGCAVDENG 118 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLI 173 + + +A + +M P+ KG + +++ + + G+ + Sbjct: 119 VSQPLTAIAKLAVPQSFAAPGTQ-IVRVDAGAMEPVIGKGAFVGIDTTQKNIVSGELYGV 177 Query: 174 KPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + K + L + N +P + + R++W Q Sbjct: 178 FMPFEGVAIKRVFLDAANARFILRTENPTHPEQYLPIDQHADRIFGRVVWVLQ 230 >gi|256851276|ref|ZP_05556665.1| LexA repressor [Lactobacillus jensenii 27-2-CHN] gi|260660700|ref|ZP_05861615.1| LexA repressor [Lactobacillus jensenii 115-3-CHN] gi|282931496|ref|ZP_06336999.1| repressor LexA [Lactobacillus jensenii 208-1] gi|297206143|ref|ZP_06923538.1| repressor lexA [Lactobacillus jensenii JV-V16] gi|256616338|gb|EEU21526.1| LexA repressor [Lactobacillus jensenii 27-2-CHN] gi|260548422|gb|EEX24397.1| LexA repressor [Lactobacillus jensenii 115-3-CHN] gi|281304369|gb|EFA96468.1| repressor LexA [Lactobacillus jensenii 208-1] gi|297149269|gb|EFH29567.1| repressor lexA [Lactobacillus jensenii JV-V16] Length = 211 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 63/218 (28%), Gaps = 29/218 (13%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAA 64 KI E I E P+ + L T + + R T +FK Sbjct: 11 KILEFIYNTVEDRGFPPTVREICEAVDLSSTSTVHGHLN-------RLVKTGYLFK---- 59 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + P + + + + G D+ + V PE Sbjct: 60 -----DPSKPRALEITQEGLNALGVDPGIPYLGTVAAGDPDTALADDSGAEYYVQRPERF 114 Query: 125 SPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + +Y K SM D++I+ GD ++ K Sbjct: 115 DKRDPLY-------MLKVDGMSMIERGIYPDDLVIVRHQNVAAQGDLVVAYTENNGTTLK 167 Query: 184 VLISRRGRS-IDLMSLNCC-YPVDTVEMSDIEWIARIL 219 L+ R + L + N YP + + ++ + +++ Sbjct: 168 ELVRDRSSKQLRLKAYNKEMYPDELLPDTNFKICGKVV 205 >gi|16760940|ref|NP_456557.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141368|ref|NP_804710.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413091|ref|YP_150166.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180571|ref|YP_216988.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613428|ref|YP_001587393.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552766|ref|ZP_02346517.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234173|ref|ZP_02659231.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239241|ref|ZP_02664299.1| protein UmuD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244852|ref|ZP_02669784.1| protein UmuD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259712|ref|ZP_02681685.1| protein UmuD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462457|ref|ZP_02696388.1| protein UmuD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443595|ref|YP_002041263.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448647|ref|YP_002046049.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469768|ref|ZP_03075752.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736107|ref|YP_002115033.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197264643|ref|ZP_03164717.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362017|ref|YP_002141654.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200390791|ref|ZP_03217402.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213053457|ref|ZP_03346335.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420231|ref|ZP_03353297.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426671|ref|ZP_03359421.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580606|ref|ZP_03362432.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622953|ref|ZP_03375736.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648749|ref|ZP_03378802.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852544|ref|ZP_03382076.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583505|ref|YP_002637303.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289806023|ref|ZP_06536652.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289823799|ref|ZP_06543411.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300632|pir||AF0755 UmuD protein (EC 3.4.21.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503237|emb|CAD05745.1| UmuD protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136995|gb|AAO68559.1| UmuD protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127348|gb|AAV76854.1| UmuD protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128204|gb|AAX65907.1| error-prone repair: SOS-response transcriptional repressors (LexA homologs, RecA-mediated autopeptidases) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362792|gb|ABX66560.1| hypothetical protein SPAB_01144 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402258|gb|ACF62480.1| protein UmuD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406951|gb|ACF67170.1| protein UmuD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456132|gb|EDX44971.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711609|gb|ACF90830.1| protein UmuD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634087|gb|EDX52439.1| protein UmuD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093494|emb|CAR58954.1| UmuD protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197242898|gb|EDY25518.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288061|gb|EDY27448.1| protein UmuD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603236|gb|EDZ01782.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322612|gb|EDZ10451.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331856|gb|EDZ18620.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336376|gb|EDZ23140.1| protein UmuD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205350842|gb|EDZ37473.1| protein UmuD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224468032|gb|ACN45862.1| UmuD protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322616990|gb|EFY13898.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618230|gb|EFY15122.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625900|gb|EFY22719.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626352|gb|EFY23162.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632767|gb|EFY29512.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639109|gb|EFY35802.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640381|gb|EFY37038.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647214|gb|EFY43713.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648413|gb|EFY44866.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655546|gb|EFY51854.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660324|gb|EFY56562.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663005|gb|EFY59212.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668190|gb|EFY64349.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674051|gb|EFY70145.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675597|gb|EFY71671.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682992|gb|EFY79008.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686686|gb|EFY82664.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715047|gb|EFZ06618.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323195073|gb|EFZ80257.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197873|gb|EFZ82998.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204482|gb|EFZ89488.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207572|gb|EFZ92520.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210989|gb|EFZ95849.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217557|gb|EGA02276.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219153|gb|EGA03651.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227479|gb|EGA11641.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231579|gb|EGA15692.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236022|gb|EGA20101.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240592|gb|EGA24635.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245484|gb|EGA29484.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247602|gb|EGA31553.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254432|gb|EGA38248.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257758|gb|EGA41438.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263557|gb|EGA47080.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266258|gb|EGA49748.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270735|gb|EGA54174.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 139 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + + L P + FP+ + + + + + + + K Sbjct: 1 MEFFRPTELREIIPLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAT 57 Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM GD+L+++S+ + GD ++ G+ K L R ++ L+ +N Y Sbjct: 58 GDSMIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRLQLRP--TVQLIPMNGAY 114 Query: 203 PVDTVEMSD-IEWIARI 218 V D ++ + Sbjct: 115 RPIPVGSEDTLDIFGVV 131 >gi|288928163|ref|ZP_06422010.1| UmuD protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330997|gb|EFC69581.1| UmuD protein [Prevotella sp. oral taxon 317 str. F0108] Length = 146 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 5/106 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + E ++ + K + SM GDI +++ +I+ GD ++ Sbjct: 34 YIHETLDFNHDLIRNPEATFYGKVEGDSMIEAGICNGDIAVIDRSIEPRDGDVVVG-YIN 92 Query: 178 GDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILW 220 + K L R+ I+L N + ++ D E I+W Sbjct: 93 EEFTIKYLDLSHRQEGYIELRPANSNFKPIRIDEDDAFEVWGVIVW 138 >gi|66044672|ref|YP_234513.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] gi|257486996|ref|ZP_05641037.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tabaci ATCC 11528] gi|63255379|gb|AAY36475.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] gi|68637933|emb|CAI36138.1| SOS-response transcriptional repressor [Pseudomonas syringae pv. phaseolicola] gi|330901393|gb|EGH32812.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. japonica str. M301072PT] gi|330942040|gb|EGH44717.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. pisi str. 1704B] Length = 144 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165 P G V E + + ++ K SM+ D+++++ + Sbjct: 22 QVPAGFASPAVDYIEKHVSLDELAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRTA 81 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G+ ++ + + K L + L S N YP + D I ++ S Sbjct: 82 EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENSAYPSKHILEGDNLVIWGVVNYS 137 >gi|307610830|emb|CBX00445.1| phage repressor [Legionella pneumophila 130b] Length = 220 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 71/220 (32%), Gaps = 12/220 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARK-AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++I I + + +T LA + L P + ++ R P + Sbjct: 1 MDIREQIGNRITKARKELGITIKELATRTVELSPARISNWEQGT-----RSPGPLEAKLL 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 N + LL L + + + S + +T Sbjct: 56 ADQLNVSASYLLCLTDNPQGDLIQSYENKLRYIPILSMKEAPHAREILGQK---DTFAFE 112 Query: 122 EIRSPHNGIYAIQTQ-DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGD 179 + N +I++ +D+SM P GD++I++ +Q N G + + Sbjct: 113 KTIVIDNFNLSIKSAVLFAASVEDSSMQPELNPGDMVIIDGQLQPNPGQYVLVYLTEKKQ 172 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 V + G L+ + + ++ + ++ + I + Sbjct: 173 TVLRRYGEADGCLFQLLPNSELWATISIKQANEAQLIGVV 212 >gi|282159642|gb|ADA79033.1| prophage repressor protein [Francisella tularensis subsp. tularensis NE061598] Length = 217 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 T +L + +G + P + + +P+ Sbjct: 63 PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SM P +G+ ++++ D++++ Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209 >gi|188992642|ref|YP_001904652.1| LexA repressor [Xanthomonas campestris pv. campestris str. B100] gi|167734402|emb|CAP52612.1| LexA repressor [Xanthomonas campestris pv. campestris] Length = 201 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176 +G+ ++A++ + Q SM+ +GD++ + + G ++ + Sbjct: 95 IGLDRQLWLDRSLFALRPD-YLLQVQGDSMIDDGILEGDLVGVQRSSDARNGQIVVARVD 153 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+I K L +I L+ N + V Sbjct: 154 -GEITIKRLER-SADAIRLLPRNPAHAPIVVADD 185 >gi|224457600|ref|ZP_03666073.1| prophage repressor protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254371073|ref|ZP_04987075.1| prophage repressor protein [Francisella tularensis subsp. tularensis FSC033] gi|151569313|gb|EDN34967.1| prophage repressor protein [Francisella tularensis subsp. tularensis FSC033] Length = 221 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 12 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 T +L + +G + P + + +P+ Sbjct: 67 PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 108 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SM P +G+ ++++ D++++ Sbjct: 109 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 168 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + +D I R++ Sbjct: 169 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 213 >gi|134301558|ref|YP_001121526.1| peptidase S24-like domain-containing protein [Francisella tularensis subsp. tularensis WY96-3418] gi|254875293|ref|ZP_05248003.1| prophage repressor protein [Francisella tularensis subsp. tularensis MA00-2987] gi|134049335|gb|ABO46406.1| Peptidase S24-like domain protein/prophage repressor protein [Francisella tularensis subsp. tularensis WY96-3418] gi|254841292|gb|EET19728.1| prophage repressor protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 217 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 T +L + +G + P + + +P+ Sbjct: 63 PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SM P +G+ ++++ D++++ Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209 >gi|56708449|ref|YP_170345.1| prophage repressor protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670920|ref|YP_667477.1| prophage repressor protein [Francisella tularensis subsp. tularensis FSC198] gi|56604941|emb|CAG46034.1| prophage repressor protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321253|emb|CAL09417.1| prophage repressor protein [Francisella tularensis subsp. tularensis FSC198] Length = 221 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 12 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 T +L + +G + P + + +P+ Sbjct: 67 PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 108 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SM P +G+ ++++ D++++ Sbjct: 109 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 168 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + +D I R++ Sbjct: 169 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 213 >gi|307258155|ref|ZP_07539905.1| Possible LexA family repressor/S24 family protease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863340|gb|EFM95273.1| Possible LexA family repressor/S24 family protease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 107 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-- 190 + K + SM P + GDI+I++ ++ + G+ + + K Sbjct: 6 VSGDAFALKIKGDSMEPEFIAGDIVIIDPRVEPHAGEFVAAINGDYEATFKKYRPLEDLD 65 Query: 191 ----RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + +L+ LN + + +I I ++ Sbjct: 66 EYGRQHFELVPLNPDWHSMSSLKQEIRIIGTMV 98 >gi|304395409|ref|ZP_07377292.1| putative phage repressor [Pantoea sp. aB] gi|304356703|gb|EFM21067.1| putative phage repressor [Pantoea sp. aB] Length = 243 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 66/227 (29%), Gaps = 18/227 (7%) Query: 11 EAIDRMAERHNL----TPSGLARKA---GLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + E + +AR G ++ K F + + ++ ++L Sbjct: 13 ARLIAACESAGIVGHGRNKQVARALQQQGCKISTPGVWKWFNAQSVPDGGNLLALSQLLG 72 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN----KWNTVG 119 + S ++ S G + P + + Sbjct: 73 V--RVEWLQYGMEQSTEPVAMSTLTGQKSVFRIDSLDIGQRSAAGLPARDEFVETIQAIE 130 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + SM + D L ++ ++++ GD + I Sbjct: 131 YGLDEARVLFNGRPAENIRLIAINSDSMADTFAPRDQLFVDISVRMFDGDGIYIFTLDEQ 190 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWASQ 223 + K L + + I ++S N Y + ++ + +A+++ SQ Sbjct: 191 LYLKRLQLQH-KKIAVISDNKRYETWYLNRDEVTSLKVLAKVIM-SQ 235 >gi|254368876|ref|ZP_04984889.1| hypothetical protein FTAG_00694 [Francisella tularensis subsp. holarctica FSC022] gi|157121797|gb|EDO65967.1| hypothetical protein FTAG_00694 [Francisella tularensis subsp. holarctica FSC022] Length = 217 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 T +L + +G + P + + +P+ Sbjct: 63 PSDTSIITVTNVP------VLSYIQAGEFTESQENIDP----IDYLQIPDTL-------- 104 Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 I + Q SM P +G+ ++++ D++++ Sbjct: 105 IPKNSFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209 >gi|153952309|ref|YP_001398209.1| putative phage repressor protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939755|gb|ABS44496.1| putative phage repressor protein [Campylobacter jejuni subsp. doylei 269.97] Length = 239 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 24/222 (10%) Query: 13 IDRMAERHNLTPSGLARKAGL-----DPTSFNKSKR-FGIEGRNRW-PSTESIFKILAAT 65 I N+T LA L T+ K F + +R P + I Sbjct: 11 IKSKMREKNITNQYLADYITLHDEKNKRTTVEAIKSWFRSDDNSRTVPEIHKLKYISELL 70 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 LL+ + + + G+ + V V E Sbjct: 71 ELDANYLLNFENKNTKEEVIFRYFPDIYASAGFGTSSQSEEVKI--------VSVDENFL 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIV 181 I+ K SM P+ GD +I++ + ++ D ++ + D+ Sbjct: 123 KEILDIPIKKSYDIIKINGDSMEPILSNGDFIIVDRSKNSLGAISNADIVIFRKN-DDLF 181 Query: 182 AKVLISRR-GRSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219 K + + L+S N Y V+ E + ++ Sbjct: 182 CKKIKKEPFEDYLFLVSENKKYEDKKVDNVEFEQCEILGAVV 223 >gi|57237571|ref|YP_178585.1| phage repressor protein, putative [Campylobacter jejuni RM1221] gi|57166375|gb|AAW35154.1| phage repressor protein, putative [Campylobacter jejuni RM1221] Length = 244 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 18/194 (9%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + K + + + P + I + A + +++ + Sbjct: 45 SEATIKKWLMSKEDNKTK-PKPQYIKILCNALDIPFNEVILQDVFRNDNQINFRYFPDIY 103 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 G+ + V V E I+ K SM P+ Sbjct: 104 ASAGLGTSSQSEEVKI--------VSVDENFLKEILDIPIKKSYDIIKINGDSMEPILSN 155 Query: 154 GDILILNSAI----QVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVE 208 GD +I++ + ++ D ++ + D+ K + I L+S N Y V+ Sbjct: 156 GDFIIVDRSKNSLQTISNADIVIFRKN-DDLFCKKIKKEPFEDYIFLVSENKKYEDKKVD 214 Query: 209 MSDI---EWIARIL 219 S+ E + ++ Sbjct: 215 NSEFEQCEILGAVV 228 >gi|294786785|ref|ZP_06752039.1| UmuD protein [Parascardovia denticolens F0305] gi|294485618|gb|EFG33252.1| UmuD protein [Parascardovia denticolens F0305] Length = 140 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 2/102 (1%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 S + SM GD+LI++ ++ D ++ Sbjct: 24 YFDGDFSFDENVIIHPDTTFIVTVAGDSMQGAGIFDGDLLIVDRSLPAQENDVVIAAID- 82 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L+ + + L N YP + I ++ Sbjct: 83 GELTVKRLVIDQEGNPVLHPENPSYPDIHLYWEADALIWGVV 124 >gi|294789667|ref|ZP_06754900.1| peptidase, S24 family [Simonsiella muelleri ATCC 29453] gi|294482379|gb|EFG30073.1| peptidase, S24 family [Simonsiella muelleri ATCC 29453] Length = 198 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 65/218 (29%), Gaps = 34/218 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++++A ++ + H++ + LA + + ++ G+ + Sbjct: 4 TTARLYQAAAQLRQIHDI--AELALALAVSQQTLRNWEQKGLSKK--------------- 46 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + ++ G F + T + + Sbjct: 47 --------------GFQEAKQVFGLSIKWLESGDGDMLERLPEKFSEPSIVPTHNLDLTQ 92 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + +ML GDI+++++ IQ G + + Sbjct: 93 FALQRLGLANKHIITQIVNNDNMLNTLSIGDIVLIDTTIQQYIGSGIYAITTPNGNMIYR 152 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + + + + L+ N YP + V + + R++ Sbjct: 153 INTFQNGFLMLIHDNPAYPPEIVRPDELGSLNITGRVV 190 >gi|123966656|ref|YP_001011737.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9515] gi|123201022|gb|ABM72630.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9515] Length = 210 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 50/186 (26%), Gaps = 8/186 (4%) Query: 41 SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + ++ PS + + + + Q + +E + L Sbjct: 24 WIKEYMKDFQHSPSIRQMMQAMGLKSPAPIQSRLKHLQEKGYISWQEGKARTLQLIDEVI 83 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 G G G T + + + SM+ GD++++ Sbjct: 84 EGIPVMGSVAAGGLIETYSDVNENLDISEVLK-KKNVFALTVNGDSMIDACIADGDMVLM 142 Query: 160 NS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + + G + K R I L + N Y + + + + Sbjct: 143 EPIIDSNSLRNGTIVSAMVPGLGTTLKYFSKRGA-KIFLEAANPAYEPIELNLDQVVFQG 201 Query: 217 RI--LW 220 ++ +W Sbjct: 202 KLLAVW 207 >gi|224453|prf||1105256A repressor lambda mutant Length = 136 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + +D SM P + G +++++ V GD + + ++ K LI Sbjct: 38 DSAFWFEVEDNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLEGDELTFKKLIRD 97 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 98 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 129 >gi|307546321|ref|YP_003898800.1| LexA repressor [Halomonas elongata DSM 2581] gi|307218345|emb|CBV43615.1| LexA repressor [Halomonas elongata DSM 2581] Length = 158 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 14/119 (11%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILN 160 G G+ + VP + SM+ GD++I+ Sbjct: 43 GMPIEACLDAGS----IEVPTRMVRR--------NTYALRVHGNSMIDCNIFDGDVIIIE 90 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ ++ K L + + L N + SDI+ + ++ Sbjct: 91 RRESAENGETAVVMINDQEVTLKKLYIEKSG-VRLQPANEEMAPIYLRNSDIQVLGLVM 148 >gi|304398438|ref|ZP_07380311.1| transcriptional repressor, LexA family [Pantoea sp. aB] gi|304353943|gb|EFM18317.1| transcriptional repressor, LexA family [Pantoea sp. aB] Length = 204 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 38/214 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + +++++ I + P + +A + G R P+ Sbjct: 1 MKALTSRQQQVYDLIRDHISSTGMPPTRAEIAAQLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA L S G G G Sbjct: 44 EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEVSEGLPLIGRVAAGEPI 90 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + + D + SM + GD+L ++ V G ++ + Sbjct: 91 MAQEHIETHYKVDPGLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 150 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ K + + L+ N + V+ Sbjct: 151 ID-DEVTVKRWKKQGA-IVHLLPENSDFDPIVVD 182 >gi|300312765|ref|YP_003776857.1| SOS mutagenesis protein [Herbaspirillum seropedicae SmR1] gi|300075550|gb|ADJ64949.1| SOS mutagenesis protein [Herbaspirillum seropedicae SmR1] Length = 141 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 4/85 (4%) Query: 137 DTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 SM +GD ++++ ++ G ++ G+ K L + +L Sbjct: 52 TFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQPGHIVVAIVN-GEFTIKRL-RLVNGAYEL 109 Query: 196 MSLNCCYPVDTVEMSDI-EWIARIL 219 N + ++ E ++ Sbjct: 110 HPENPDFRPIRFGDGEVLEVFGVVV 134 >gi|326570390|gb|EGE20430.1| peptidase S24-like protein [Moraxella catarrhalis BC8] Length = 216 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 55/213 (25%), Gaps = 17/213 (7%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 PS A KA P + + + + R + + + L + + Sbjct: 2 PSERA-KADQFPKMIRRYSKG--QAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKL 58 Query: 84 EKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGVPEIRSPHN-------GIYAIQT 135 + + F F G+ P + + Sbjct: 59 TPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGRRTLSNLGVMPI 118 Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 D SM P + GD + ++ + R+ + K L + + Sbjct: 119 NAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRI 178 Query: 196 MSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 +S N +P + + E I + S Sbjct: 179 VSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 211 >gi|317969758|ref|ZP_07971148.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CB0205] Length = 148 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + V + + + + SM + GD+L+++ +++ G ++ Sbjct: 35 ADDYIDV--GIDLNETLIRHPSSTFFLRVSGDSMVEAGIQHGDLLVVDRSLEARPGHVVV 92 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G K L + L + N YP + D++ Sbjct: 93 AVLD-GAFTLKRLARH-QGRLRLEAANSAYPPLELHHCGDVQI 133 >gi|251793277|ref|YP_003008005.1| LexA repressor [Aggregatibacter aphrophilus NJ8700] gi|247534672|gb|ACS97918.1| LexA repressor [Aggregatibacter aphrophilus NJ8700] Length = 208 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 34/224 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + +++++ + E + P+ +A + + +++ Sbjct: 1 MKPLTARQQEVYDFLKHHLETTGMPPT----RAEISK------ELGFRSPNAAEEHLKAL 50 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K + + + + L G G G Sbjct: 51 AK--------------KGVIEIISGASRGIRLLLEDNNVEEEPGLPLIGRVAAGEPILAE 96 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + D K SM + GD+L ++S V G ++ + Sbjct: 97 QHIEGTYHVDPAMFKPRADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQVVVARI-E 155 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216 ++ K L + G I L + N + V+++ +IE IA Sbjct: 156 DEVTVKRLERK-GSIIYLHAENEEFAPIVVDLTQRPHFEIEGIA 198 >gi|188533594|ref|YP_001907391.1| Protein UmuD [Erwinia tasmaniensis Et1/99] gi|188028636|emb|CAO96498.1| Protein UmuD [Erwinia tasmaniensis Et1/99] Length = 139 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + A K SM GD+L+++ ++ GD ++ Sbjct: 32 DYVE--DRLDLNTLLIAHPGATYFIKVSGESMTGAGIGDGDLLVVDRSLSARHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+ K L + S+ L+ N Y T ++E + Sbjct: 90 -VAGEFTVKELRTHP--SLQLVPHNDSYSPMTFHNAEELEIFGVV 131 >gi|126641272|ref|YP_001084256.1| peptidase S24 S26A and S26B [Acinetobacter baumannii ATCC 17978] Length = 197 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 48/194 (24%), Gaps = 6/194 (3%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNETICQLLDLPFSDGRTTEKKEKEIP 91 + ++ + P + + T Sbjct: 1 MSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTTGNSEDSFRESDVFSPTVVNNDAAD 60 Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149 + F ++ + +P S Q K + SM Sbjct: 61 QYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPASFFKEKRVAQECMRIIKAKGDSMTD 120 Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 + GD++ ++ + + G+ + K + S+ L SLN + V Sbjct: 121 YIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMIKQIFKEADGSLILHSLNEKFRDRRVTE 180 Query: 210 S---DIEWIARILW 220 + + + R W Sbjct: 181 ENGKNFKVMGRQFW 194 >gi|330861945|emb|CBX72114.1| lexA repressor [Yersinia enterocolitica W22703] Length = 133 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 3/113 (2%) Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 G G G E + + D + SM + GD+L Sbjct: 4 EDGLPLIGRVAAGEPLLAQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILDGDLLA 63 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ V G ++ + ++ K L + G + L+ N + V++ + Sbjct: 64 VHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 114 >gi|312129359|ref|YP_003996699.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311905905|gb|ADQ16346.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 252 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 69/225 (30%), Gaps = 19/225 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + + + R L+ +A + + + K + E P E + K Sbjct: 1 MSLLS-----DNMRFLRARMGLSQQAVADELIITRGRYAKYEDGMSE-----PPIELLLK 50 Query: 61 ILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--N 113 I +I + +P + + +P++ + G + Sbjct: 51 ISRFYKVSIDLLVSVDIRRVPLDELQQLPDNRILLPIVVDTEGRNRIEIIPHKARMGYLS 110 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRL 171 ++ E + + + SM P I+ ++S + G Sbjct: 111 GYSDPEYIESLQHISLPFLSHAKYRAFPATGDSMPPHTEGSFIIGKYVSSRADLRVGKTY 170 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + R I K L + + L S N Y VE +D+ I Sbjct: 171 VFLTRQEGISYKRLGEIKAHGLVLHSDNPFYKPFEVEYADLLEIW 215 >gi|326789355|ref|YP_004307176.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] gi|326540119|gb|ADZ81978.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] Length = 805 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 109 FPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166 G V + + + + SM + GD ++++S+ Sbjct: 689 IAAGIPIEIVDEIRGTFDLPRELLRGKESVYILQVKGDSMIEKDIQNGDYVVIDSSA-AV 747 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G K ++ G S+ L+S N Y +E D+ + +++ Sbjct: 748 NDQDIAAVYYNGATTLKQVMHM-GDSVLLISANPKYEPIHIEEGDLSIMGKLV 799 >gi|171058765|ref|YP_001791114.1| LexA repressor [Leptothrix cholodnii SP-6] gi|229621219|sp|B1Y250|LEXA_LEPCP RecName: Full=LexA repressor gi|170776210|gb|ACB34349.1| transcriptional repressor, LexA family [Leptothrix cholodnii SP-6] Length = 231 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 16/216 (7%) Query: 2 TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + ++I + I ER P + +A + G E + + + Sbjct: 5 PKLTARQQQILDLIQSTIERTGAPPTRAEIATEFGFRSA-------NAAEEHLQALARKG 57 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--SGGFFDSGVFPTGNKW 115 + ++L T+ I D S + + + L G G+ Sbjct: 58 VIELLGGTSRGIRLKSDTLRSINESRLRGIGQQFSLPLSNMPPAQLTLPLVGRVAAGSPI 117 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + D K + SM GD++ + A + G ++ + Sbjct: 118 LAQQHIDQSYTFEAHMFSRKPDFLLKVRGMSMRDAGILDGDLIAVQRASEAKNGQIVVAR 177 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ K + IDL+ N + + V Sbjct: 178 -LGDEVTVKRWRRSKSG-IDLIPENPDFDIIHVPAD 211 >gi|120601508|ref|YP_965908.1| prophage repressor [Desulfovibrio vulgaris DP4] gi|120561737|gb|ABM27481.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Desulfovibrio vulgaris DP4] Length = 202 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + ++ I + SML GD+L+++ A+ G R++ Sbjct: 93 ADDYID--RSLDLNDHIVKHPAATFYVRASGESMLGAGVHDGDLLVVDRALDPRPG-RVV 149 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218 I G++ K L+ G + L N YP + D+E + Sbjct: 150 IAAVDGELTVKRLVR-EGGRLLLAPENAAYPPLDITGREDVEVWGVV 195 >gi|28198029|ref|NP_778343.1| LexA repressor [Xylella fastidiosa Temecula1] gi|182680656|ref|YP_001828816.1| LexA repressor [Xylella fastidiosa M23] gi|32129716|sp|Q87F45|LEXA_XYLFT RecName: Full=LexA repressor gi|229470197|sp|B2I679|LEXA_XYLF2 RecName: Full=LexA repressor gi|28056089|gb|AAO27992.1| LexA repressor [Xylella fastidiosa Temecula1] gi|182630766|gb|ACB91542.1| transcriptional repressor, LexA family [Xylella fastidiosa M23] gi|307579117|gb|ADN63086.1| LexA repressor [Xylella fastidiosa subsp. fastidiosa GB514] Length = 211 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 57/209 (27%), Gaps = 23/209 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I ++PS +AR G G+ ++ Sbjct: 7 QQAILSLITNNINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 56 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + ++ + +L P G G + V + Sbjct: 57 RIPGQARGIRLKHLTEVDEVALALQSKDVLRLPVLGRVAAGQPIGADIG--EDHVVL--- 111 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + ++ D + Q SM GD++ ++ + G ++ + +I Sbjct: 112 ---LDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVARID-DEITV 167 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L+ I L+ N + V Sbjct: 168 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 195 >gi|332519273|ref|ZP_08395740.1| Peptidase S24/S26A/S26B, conserved region [Lacinutrix algicola 5H-3-7-4] gi|332045121|gb|EGI81314.1| Peptidase S24/S26A/S26B, conserved region [Lacinutrix algicola 5H-3-7-4] Length = 147 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 4/142 (2%) Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-EIRSPHNGIYAIQTQDT 138 + K + P + G T E S + + Sbjct: 1 MKILHKSTGLTLYVPEPIKDAAAQLFDTGISAGFPSPTEDFSQERLSLDQELVKNKETTF 60 Query: 139 RHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 + SM+ D+L+++ +++ + G+ K L I L Sbjct: 61 YARVSGQSMIGAGLDDNDLLVIDRSLEPENNKIAVCFLD-GEFTVKRL-RVTKDEIWLKP 118 Query: 198 LNCCYPVDTVEMSDIEWIARIL 219 N YP+ + + I I+ Sbjct: 119 ENPDYPIINITEENNFLIWGIV 140 >gi|71281427|ref|YP_267004.1| LexA repressor [Colwellia psychrerythraea 34H] gi|123733835|sp|Q48AA9|LEXA_COLP3 RecName: Full=LexA repressor gi|71147167|gb|AAZ27640.1| LexA repressor [Colwellia psychrerythraea 34H] Length = 211 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 34/208 (16%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I++ I + + P + +A G S N ++ +++ K Sbjct: 15 QQQIYDLIKAKIQDTGMPPTRAEIANFFGFK--SANAAEEH----------LKALAK--- 59 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L + G G G E Sbjct: 60 --------------KGYIEMLAGTSRGIRLVEEMLEAEGLPLIGRVAAGEPILAQEHIEE 105 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 +G D + SM + GD+L ++ +V G ++ + D+ Sbjct: 106 HYKMDGNLFHPAADYLLRVNGESMKDIGILDGDLLAVHQTTEVQNGQVVVAR-VENDVTV 164 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K G + L + N + V+++ Sbjct: 165 KRFKR-EGNVVYLHAENEDFSPIKVDLA 191 >gi|120599727|ref|YP_964301.1| putative phage repressor [Shewanella sp. W3-18-1] gi|120559820|gb|ABM25747.1| putative phage repressor [Shewanella sp. W3-18-1] Length = 253 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 26/220 (11%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + A +G+ T+ + + PS +++ I + + L Sbjct: 34 SIRAFALDSGVSETAMRQYVSGKSD-----PSRKALIAIARSGKVGVEWLASGKGPKLTV 88 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEIRSPHNGIYAIQTQDTR 139 ++ I S V + + Sbjct: 89 DHIEDSYIQKADGFIYVSNIRIQKEVSSEEDTTSKIVNTRYAFRSDWIEKEGLQAQRLAM 148 Query: 140 HKTQDTSMLPLYRKGDILIL------NSAIQVNCG---------DRLLIKPRTGDIVAKV 184 + SM PL ++GD L++ + + +++ G D + + +V K Sbjct: 149 VNAKGDSMEPLIKEGDKLLVETFFYKDPSGRIHQGLEPSTFIESDGVYVIRLDKHMVVKR 208 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 L + + + N Y + ++ I +A+++ A Sbjct: 209 LQLDMKGGVYIKNDNPAYETIHLTKAELVSIVIVAKVILA 248 >gi|150397057|ref|YP_001327524.1| putative phage repressor [Sinorhizobium medicae WSM419] gi|150028572|gb|ABR60689.1| putative phage repressor [Sinorhizobium medicae WSM419] Length = 241 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 68/236 (28%), Gaps = 27/236 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSF-------NKSKRFGIEGRNRW 52 M+ ++ E + + S A G+ +++ N + E R Sbjct: 9 MSPVMSER-AERLREARVKAGYRFASDAANALGIVTSTYRAHENGQNDFELGEAEVYGRK 67 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL-----YFPPSGSGGFFDSG 107 + + ++ + T L ++ + G D Sbjct: 68 FNVDPLWLLTGTDRRTSIPLPPATTLPEVHAPNARVGAKVIGQGEKIPVFGQAVGGVDGE 127 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 GN V P I S +G YA SM P Y G++ ++ + +V Sbjct: 128 FIMNGNVLYEVMAPPILSDVSGAYA-------VSVSGDSMYPRYEDGEVCFVDPSRRVRK 180 Query: 168 GDRLLIKPRTGD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 GD ++ + R + K + + L N E + + I Sbjct: 181 GDYVIAQIRLEESGALLAYVKKFVRHNSSELVLEQFNP-PKELRFEAHTVHSVHYI 235 >gi|283956310|ref|ZP_06373790.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 1336] gi|283792030|gb|EFC30819.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 1336] Length = 244 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 18/194 (9%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + K + + + P + I + A + +++ + Sbjct: 45 SEATIKKWLMSKEDNKTK-PKPQYIKILCNALDIPFNEVILQDVFRNDNQINFRYFPDIY 103 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 G+ + V V E I+ K SM P+ Sbjct: 104 ASAGLGTSSQSEEVKI--------VSVDENFLKEILDIPIKKSYDIIKINGDSMEPILSN 155 Query: 154 GDILILNSAI----QVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVE 208 GD +I++ + ++ D ++ + D+ K + I L+S N Y V+ Sbjct: 156 GDFIIIDRSKNSLETISNADIVIFRKN-DDLFCKKIKKEPFENYIFLVSENKKYEDKKVD 214 Query: 209 MSDI---EWIARIL 219 S+ E + ++ Sbjct: 215 NSEFEQCEILGAVV 228 >gi|294085036|ref|YP_003551796.1| DNA polymerase V [Candidatus Puniceispirillum marinum IMCC1322] gi|292664611|gb|ADE39712.1| DNA polymerase V [Candidatus Puniceispirillum marinum IMCC1322] Length = 129 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + SM GD+L+++ ++ D ++ Sbjct: 21 AEDYID--STLDLNAHLIENPAATFFLRVAGDSMTGAGIHSGDLLMVDRSLTPKINDIVI 78 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 + K L + L S N YP + I ++ S Sbjct: 79 -ATIHNEFTVKRLGQHKEGWF-LQSENPDYPCLEIPEDS--HIWGVVTYS 124 >gi|163792598|ref|ZP_02186575.1| prophage MuMc02-like, peptidase, family S24 [alpha proteobacterium BAL199] gi|159182303|gb|EDP66812.1| prophage MuMc02-like, peptidase, family S24 [alpha proteobacterium BAL199] Length = 243 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 18/198 (9%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 LA G+D ++ +G P T ++ A T + D Sbjct: 56 ALAAHLGVDESAL-------RDGSLPMPVTTGARQVDAVTARRPRVYSRILDPDTEPGVV 108 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 E+ + G+ + ++ P H + A Sbjct: 109 AVPEVRVTAAAGGGAVAEY-------EALGDSWYFPVDWLRHE-LRARAADLKIISIDGD 160 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG---RSIDLMSLNCCY 202 SM P+ GD ++++++ + + +VAK + ++ + S N Y Sbjct: 161 SMEPVLSAGDKVLIDTSRVAPSPPGIFVLHDGLGLVAKQVEYVPNTDPPTLVIKSANSRY 220 Query: 203 PVDTVEMSDIEWIARILW 220 + ++ R++W Sbjct: 221 QDYERTVDEVTIAGRVIW 238 >gi|15603046|ref|NP_246118.1| LexA repressor [Pasteurella multocida subsp. multocida str. Pm70] gi|13431624|sp|P57917|LEXA_PASMU RecName: Full=LexA repressor gi|12721532|gb|AAK03265.1| LexA [Pasteurella multocida subsp. multocida str. Pm70] Length = 211 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 38/220 (17%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62 +++++ + R E + P + ++++ G R P+ E K L Sbjct: 11 QQEVYDLLKRHLENTGMPPTRAEISKELGF-----------------RSPNAAEEHLKAL 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + + + L + G G G E Sbjct: 54 ARKGVIEI----------ISGTSRGIRLLLEESESDENQGLPLVGRVAAGEPILAEQHIE 103 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + K SM + GD+L ++S V G ++ + ++ Sbjct: 104 GTYQVDANMFKPQANFLLKVYGQSMKNIGILDGDLLAVHSTKDVRNGQIVVARI-EDEVT 162 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216 K L + G I L + N + V+++ +IE IA Sbjct: 163 VKRLERK-GSVIYLHAENEEFAPIVVDLNQQPNFEIEGIA 201 >gi|303245282|ref|ZP_07331566.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio fructosovorans JJ] gi|302493131|gb|EFL52993.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio fructosovorans JJ] Length = 142 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 3/104 (2%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + ++ A + SM + GDIL+++ A + G ++ Sbjct: 34 EDYLDQALDLNDLCIAHPAATFYVRASGESMRGAGIQSGDILVVDRAEEARPGRIVIAAV 93 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + L N Y + I ++ Sbjct: 94 D-GELTVKRL-KHMDGRLFLAPENDAYKPIEIRPESSFEIWGVV 135 >gi|218886530|ref|YP_002435851.1| peptidase S24 and S26 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757484|gb|ACL08383.1| peptidase S24 and S26 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 150 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + P + H + + Q SM GD+L+++ A++ ++ Sbjct: 41 ADDYMDRPLDIAEHLVRH--PEATFFLRAQGQSMTGAGIHDGDLLVVDRAVEPVHN-KVA 97 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I G++ K L R + L+ N Y V D + ++ Sbjct: 98 IVAVDGELTVKRLY-LRAGRVVLLPENPDYEPLDVTGRDDVHVWGVV 143 >gi|255527634|ref|ZP_05394495.1| LexA repressor [Clostridium carboxidivorans P7] gi|296185312|ref|ZP_06853722.1| repressor LexA [Clostridium carboxidivorans P7] gi|255508676|gb|EET85055.1| LexA repressor [Clostridium carboxidivorans P7] gi|296050146|gb|EFG89570.1| repressor LexA [Clostridium carboxidivorans P7] Length = 487 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 9/121 (7%) Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155 P S + + VP K + SM+ GD Sbjct: 366 PVYSDIAAGEPILMNPEIEDVFYVPTYWLKGM------KDCFILKVRGDSMIGADIDNGD 419 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 +I+ D + + G+ K ++++ I LM N Y + I Sbjct: 420 YVIIKKQYTAQNKDIVAVNLD-GNATLKRFVNKKEG-IYLMPENKKYEPIRINDEGARII 477 Query: 216 A 216 Sbjct: 478 G 478 >gi|294665466|ref|ZP_06730751.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604765|gb|EFF48131.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 201 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M S ++ + + + ++PS +A+ G R + + + Sbjct: 1 MPSLPPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALADA 52 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++L G +P+L +G P G Sbjct: 53 GLIELLPN-------QKRGIRLPGGAGRDALLALPVLGRVAAG---------LPIGA--- 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +G+ +++++ + Q SM+ GD++ ++ + + G ++ + Sbjct: 94 DIGLERQLWLDRAMFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G I K L I L+ NC + V Sbjct: 153 D-GGITIKRLER-GAERIRLLPRNCAHAPIVVAAD 185 >gi|270159187|ref|ZP_06187843.1| LexA repressor protein [Legionella longbeachae D-4968] gi|289165985|ref|YP_003456123.1| Peptidase S24 family protein [Legionella longbeachae NSW150] gi|269987526|gb|EEZ93781.1| LexA repressor protein [Legionella longbeachae D-4968] gi|288859158|emb|CBJ13087.1| Peptidase S24 family protein [Legionella longbeachae NSW150] Length = 168 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + + SM GD L+++ +I+ + G ++ Sbjct: 58 ADDYIE--GYLDLNMKFIKHPSDTFVVQAIGESMVEAGIFSGDWLLVDRSIEPSDGRIVI 115 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + + L+ N + + I ++ Sbjct: 116 AAIN-GELTVKRLFKK-AGKVQLLPANPQFNPIDINEDSEMVIWGVV 160 >gi|113952925|ref|YP_730045.1| LexA repressor [Synechococcus sp. CC9311] gi|113880276|gb|ABI45234.1| LexA repressor [Synechococcus sp. CC9311] Length = 212 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 21/192 (10%), Positives = 46/192 (23%), Gaps = 8/192 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I PS + + + + Q +E + L Sbjct: 20 QQELYDWLSDYIGSHRHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWLTWQEGQARTLQ 79 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + G G G T + + + SM+ Sbjct: 80 LLGDVASGIPVLGAVAAGGLVETFDDVQEHLDLAPVLETRG-LFALTVNGDSMVDAHIAD 138 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++++ + G + K G + L + N Y + Sbjct: 139 GDVVLMEPVQEPGRLRQGTIVSALVAGSGTTLKHFH-LDGSVVRLEAANPAYDPIELPAE 197 Query: 211 DIEWIARI--LW 220 ++ ++ +W Sbjct: 198 QVQVQGKLMAVW 209 >gi|116749299|ref|YP_845986.1| putative phage repressor [Syntrophobacter fumaroxidans MPOB] gi|116698363|gb|ABK17551.1| putative phage repressor [Syntrophobacter fumaroxidans MPOB] Length = 244 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 21/226 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++ + L+ + AR+ + + + P+ + K+ + + Sbjct: 19 RLKKIIQNSGLSLAEFARRTQVSKNTLVNYRDEAT-----SPTGTFLEKVCRNFSVSASW 73 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPEIRSP--HN 128 LL + ++ + P S G G+ + Sbjct: 74 LLLGDGGPYDVSGGGKRAVEYTLIPLLKSRVSTGPDGEILFGDIEDHYPFKLWWLEKLVG 133 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTGDIVAKV 184 Q + Q +MLP +GD+ +++S G L+ G + Sbjct: 134 EGERRQKGLFLIRVQGDAMLPTVNQGDVALVDSDEAERMRVLSGRIYLVVLPDGATAFRR 193 Query: 185 LISRRGR---SIDLMSLN-CCYPVDTVEMS-----DIEWIARILWA 221 L GR + +S N + + + RI W Sbjct: 194 LALSGGRDCPRLVCLSDNTAAFRPFEFALDPGKPLRNHILGRIRWV 239 >gi|332184476|gb|AEE26730.1| cI [Francisella cf. novicida 3523] Length = 217 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 68/226 (30%), Gaps = 43/226 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R + LA+K G + PS + +++ Sbjct: 8 LKPALKRIGMKQIDLAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMKILGLEDNYH 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + +P+L + +G + P + + +P Sbjct: 63 PN------ARSIVAIANVPVLSYVQAGEFTESQESIDP----IDYLQIPHSL-------- 104 Query: 133 IQTQDTRHKTQDTSML----------P-----LYRKGDILILNSAIQVNCG--DRLLIKP 175 + + Q SML P +G+ ++++ D++++ Sbjct: 105 VPKNGFSLRVQGESMLYDSSESQLLSPKYAKYTLYEGENILVDPNEISPQNLVDKIVVAR 164 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 + K L+ + + LM LN + + +D I R++ Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVV 209 >gi|313672654|ref|YP_004050765.1| transcriptional repressor, lexa family [Calditerrivibrio nitroreducens DSM 19672] gi|312939410|gb|ADR18602.1| transcriptional repressor, LexA family [Calditerrivibrio nitroreducens DSM 19672] Length = 206 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 31/119 (26%), Gaps = 3/119 (2%) Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILI 158 + G G G + E P I + + SM GDI I Sbjct: 71 NNGIPILGRITAGIPIDAEENIEGYIPLEDILGDISGYFGLRVIGDSMVEKGILDGDIAI 130 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIA 216 + + + G+ K I L N Y + +D E + Sbjct: 131 IKKQPDILNNQ-VGAFMINGEFTLKTFKMMDDGRIYLKPENNKYKPIYITENDTFEVVG 188 >gi|152996004|ref|YP_001340839.1| putative prophage repressor [Marinomonas sp. MWYL1] gi|150836928|gb|ABR70904.1| putative prophage repressor [Marinomonas sp. MWYL1] Length = 148 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 5/101 (4%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + A + Q SM+ + GD+L+++ ++ GD ++ G Sbjct: 41 VEKSLDLNEFCVAHPNATFYVRAQGDSMIDVGIYSGDVLVVDRSLTARHGDIVIACI-HG 99 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218 ++ K L + + L N Y + ++E + Sbjct: 100 EMTVKTLELKPN--VLLRPKNKAYKAIHITEESELEIFGVV 138 >gi|121593926|ref|YP_985822.1| putative phage repressor [Acidovorax sp. JS42] gi|120606006|gb|ABM41746.1| putative phage repressor [Acidovorax sp. JS42] Length = 240 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 34/217 (15%) Query: 9 IWEAIDRMAERHNLTPSG-LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + ++ AG+ + +R+ P ES ++ A Sbjct: 41 VRDRLQARLIAMGIPADKTVSHVAGITQRAAQSVRRWFDASEPGLPDLESFARLCAGLGC 100 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +++ + + I + + + G Sbjct: 101 SADEIIGALRAHADDEAHCAQLIEVANCIQAITDSLAHHGQLGIP--------------- 145 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + M P + GD++ ++SA+ G+ + G + + + Sbjct: 146 ------------MRVPGDEMAPHLKAGDLVFVDSAVTQLAGNGIYAFNCNGSLYIRRVER 193 Query: 188 RRGRSIDLMSLNCCYPVDT------VEMSDIEWIARI 218 R RSI L N Y ++ + ++ Sbjct: 194 RMDRSIVLKCDNKAYQDYEWTGATAAARRRVKVLGKV 230 >gi|308188951|ref|YP_003933082.1| LexA repressor [Pantoea vagans C9-1] gi|308059461|gb|ADO11633.1| LexA repressor [Pantoea vagans C9-1] Length = 204 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 38/214 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + +++++ I + P + +A + G R P+ Sbjct: 1 MKALTSRQQQVYDLIRDHISSTGMPPTRAEIAAQLGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA L S G G G Sbjct: 44 EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEASEGIPLIGRVAAGEPI 90 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + + D + SM + GD+L ++ V G ++ + Sbjct: 91 MAQEHIETHYKVDPGLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 150 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ K + + L+ N + V+ Sbjct: 151 ID-DEVTVKRWKKQGA-IVHLLPENSDFDPIVVD 182 >gi|148242855|ref|YP_001228012.1| SOS-response transcriptional repressor [Synechococcus sp. RCC307] gi|147851165|emb|CAK28659.1| SOS-response transcriptional repressor [Synechococcus sp. RCC307] Length = 204 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 48/191 (25%), Gaps = 8/191 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 I PS + + L + +L L T ++ + Sbjct: 10 QQELYDWLAEFIADNRHSPSIRQMMQGMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQ 69 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151 L + S G G G T + + SM Sbjct: 70 LLGDAADSLGIPVLGAVAAGGLIETFDDVQEHLDIAPTLERRG-LFALTVNGDSMKDAHI 128 Query: 152 RKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 GD++++ G + K RG + L + N Y T+ Sbjct: 129 ADGDVVLMEPVRDPSRLKPGTIVSALVAGSGTTLKHFH-LRGGEVSLEAANPNYEPITLP 187 Query: 209 MSDIEWIARIL 219 ++ +++ Sbjct: 188 AEEVTVQGQLV 198 >gi|325696642|gb|EGD38531.1| phage transcriptional repressor [Streptococcus sanguinis SK160] Length = 257 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 66/232 (28%), Gaps = 29/232 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ + + L+R+ G+ ++ + P ++ KI + Sbjct: 19 ISKKLEELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFDVE 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111 + ++ ++ + + FP Sbjct: 74 VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + + + + + D + S+ P Y D + L Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 + G + K + + I L+SLN Y + + + I R++ Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|237731165|ref|ZP_04561646.1| SOS mutagenesis [Citrobacter sp. 30_2] gi|226906704|gb|EEH92622.1| SOS mutagenesis [Citrobacter sp. 30_2] Length = 139 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 8/130 (6%) Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 L FP+ + V + + + K+ SM Sbjct: 8 ELRQIVALPLFSDLVPCGFPSPAH-DYVE--QRIDLNELLVQHPCATYFVKSSGDSMTGA 64 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD+L+++ + + + GD ++ G+ K L + L+ N Y T+ Sbjct: 65 GIGNGDLLVVDRSRKPSHGDIVIAAID-GEFTVKRLQLHP--ILMLVPENNAYAPITINS 121 Query: 210 SD-IEWIARI 218 D ++ + Sbjct: 122 EDTLDIFGVV 131 >gi|299769731|ref|YP_003731757.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein [Acinetobacter sp. DR1] gi|298699819|gb|ADI90384.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein [Acinetobacter sp. DR1] Length = 254 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 32/246 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I+ + +++ P+ L +K + ++ + + R + E I K T Sbjct: 4 LKSNIEYLLNKNDTNPNDLEQKHPEIKQSTVFRILNGITKD-PRRSTLEPIAKWAGVTVN 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------------FFDSGVFPTGNK 114 + + + ++Y F+ G Sbjct: 63 DLFDKDLSVLERNQNQHNPGPDNNIIYDTEIHLYEEGDPIPDGYVAIDFYSEIKVSAGGG 122 Query: 115 WNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + SM P G + ++++ + Sbjct: 123 YLNIEQQSPHKFLFPVNEIRRYDVKPDCAKVIIVDGESMFPDLIPGQRISIDTSAKRIFD 182 Query: 169 DRLLIKPRTGDIVAKVLIS---RRGRSIDLMSLNCC--------YPVDTVEMSDIEWIAR 217 + R ++ K+L + +S N Y +E +++ I + Sbjct: 183 GEIYAFLRGDELKIKMLFEWNEQGRGGFKAVSRNTDKVKYPDEYYSPARIEAENVQIIGQ 242 Query: 218 ILWASQ 223 W S+ Sbjct: 243 YWWKSE 248 >gi|219883263|ref|YP_002478424.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus A6] gi|219862108|gb|ACL42448.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus A6] Length = 143 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 3/92 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + T + SM GD LI++ A++ G ++ Sbjct: 37 YFDGRIDLNAHLIKDVTSTYVVRVSGESMEGAGISDGDELIVDRALEPRDGSVVIAVLD- 95 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 G++ K L + L + N YP V Sbjct: 96 GELTIKRL-RITPTGVILQAENPAYPDIEVPA 126 >gi|146311560|ref|YP_001176634.1| putative prophage repressor [Enterobacter sp. 638] gi|145318436|gb|ABP60583.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Enterobacter sp. 638] Length = 144 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + + SM+ GD+L+++ A+ GD ++ Sbjct: 32 DYVE--DRIDLNKLVIKHPSATYFIRVSGESMIGAGITDGDLLVVDRALTPEHGDIVVAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G+ K L R + L+ N + + +++ + Sbjct: 90 -VAGEFTVKELRVRP--ILQLVPRNPRFSPIIFDAEEELQIFGVV 131 >gi|261866727|ref|YP_003254649.1| putative transcription regulator [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412059|gb|ACX81430.1| probable transcription regulator [Aggregatibacter actinomycetemcomitans D11S-1] Length = 137 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 12/130 (9%) Query: 100 SGGFFDSGVFPTGNKW--NTVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYR 152 F S G V P+ + P++ T TSM P Sbjct: 1 MIDCFCSVNVSAGFGSFNEGVTAPDGQVPYSDSLLQKLGIKSTHAAVFWADGTSMRPTID 60 Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD 211 GD ++++ + + GD++ + + K + I+L+S N Y T+ + Sbjct: 61 DGDQMLVDLSKKEIKGDKIYLVQNRESVWVKRV-KLNWNGIELISDNKEEYAPITLTKEE 119 Query: 212 ---IEWIARI 218 +E I ++ Sbjct: 120 ADKLEIIGQV 129 >gi|312438260|gb|ADQ77331.1| repressor LexA [Staphylococcus aureus subsp. aureus TCH60] Length = 195 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 29/196 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + +I+ I ++ + PS + GL ++ + R +G R Sbjct: 1 MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + ++ +++ + K + N Sbjct: 61 TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158 Query: 174 KPRTGDIVAKVLISRR 189 + K + Sbjct: 159 MTEEDEATVKRFYKEK 174 >gi|90416646|ref|ZP_01224576.1| LexA repressor [marine gamma proteobacterium HTCC2207] gi|90331399|gb|EAS46635.1| LexA repressor [marine gamma proteobacterium HTCC2207] Length = 201 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 39/215 (18%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++I++ I E P + +A++ G E R + + Sbjct: 1 MDRLTARQQQIFDLIRDNIEDTGYPPTRAEIAQQLGFKSA-------NAAEDHLRALARK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + P + N + Sbjct: 54 GVIE------------------MIPGASRGIRIVEQFSGIPIIGRVAAGDPILAEQNIED 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 VP D + Q SM+ + GD+L ++ ++ + Sbjct: 96 YQEVPSSTFH-------PHADYFLRVQGQSMINVGIMDGDLLAVHQQPTAENSQIVVARV 148 Query: 176 RTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEM 209 G++ K L R + I L+ N Y V++ Sbjct: 149 D-GEVTVKRLKRTRSKHEIHLLPENHDYSPILVDL 182 >gi|333005008|gb|EGK24528.1| protein umuD [Shigella flexneri VA-6] Length = 139 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQRLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132 >gi|310780566|ref|YP_003968898.1| Peptidase S24/S26A/S26B, conserved region [Ilyobacter polytropus DSM 2926] gi|309749889|gb|ADO84550.1| Peptidase S24/S26A/S26B, conserved region [Ilyobacter polytropus DSM 2926] Length = 810 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + SM GD+++L + GD + + G+ K L+ Sbjct: 712 PKELVKDESGFFLRVRGDSMKNADIDDGDLVLLRQDLDPKSGDIIAVAID-GEATLKRLM 770 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 R +I L+ N Y + D+ + Sbjct: 771 KMRN-AIILLPENPEYEEIYINEQDVNLLG 799 >gi|52842273|ref|YP_096072.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629384|gb|AAU28125.1| hypothetical phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 207 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 65/212 (30%), Gaps = 27/212 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I + T LA G + +R R P + + +A Sbjct: 14 KIGLRIKESRKNKKFTAVQLAEVTGFSAQRISNWERGT-----RTPRFKDAEILGSALGV 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + LL L + + IP++ + + +P + Sbjct: 69 SPTWLLFLDIDHKPMKDHPFQTIPIIN---------------ASSKIEGYLPIPSSIQDN 113 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 I D D SM P+Y GD++ Q +C D +LI + IS Sbjct: 114 -----ITHDDFAFIVHDKSMSPIYNAGDLVTFCKEKQNHC-DLVLIHINATEENLFRKIS 167 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDI-EWIARI 218 + +N +P E + + + I + Sbjct: 168 SEDNTFICSPINPDWPQIRFESASMFQIIGWV 199 >gi|38505658|ref|NP_942279.1| hypothetical protein sll5123 [Synechocystis sp. PCC 6803] gi|38423682|dbj|BAD01893.1| sll5123 [Synechocystis sp. PCC 6803] Length = 144 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 4/104 (3%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + SM+ GDILI++ +++ G +++I Sbjct: 36 EDYLEGKLDLNQYLIKHPAATFFVRVTGDSMIGAGIHAGDILIVDRSLEPRDG-KVVIAV 94 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+++ K L + I L S N YP + ++ D E + Sbjct: 95 VNGELLVKRL-RMEKQKIYLASENSDYPPLVITDLMDFEVWGVV 137 >gi|290510869|ref|ZP_06550239.1| lambdoid prophage e14 repressor protein C2 [Klebsiella sp. 1_1_55] gi|289777585|gb|EFD85583.1| lambdoid prophage e14 repressor protein C2 [Klebsiella sp. 1_1_55] Length = 219 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 65/199 (32%), Gaps = 17/199 (8%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT---- 82 A +PT ++ G I K + Q Sbjct: 25 FANMIDREPTQTSRFMGDGATKNIGDAMARHIEKCFDLPMGWLDQEHQTTNVAKSPDVSD 84 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 T + +P++ + +G+ F + V + + + Sbjct: 85 TNRNFVMVPVISWVQAGAWTEF---------GYAEVDL-NSTENYPCPVPCGPMTYILRV 134 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM+ YR GD++ ++ + GD ++ +G+ K LI G+ L +LN Sbjct: 135 IGDSMIDEYRPGDMIFVDPEVPAVHGDDVIALMHDSGETTFKRLIEDAGQRY-LKALNTN 193 Query: 202 YPVDTVEMS-DIEWIARIL 219 +P ++++ + I ++ Sbjct: 194 WPEPYIKINGNCSIIGTVI 212 >gi|311232940|gb|ADP85794.1| CI repressor [Desulfovibrio vulgaris RCH1] Length = 232 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 65/233 (27%), Gaps = 15/233 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------- 55 + +++E I T LA + +S + +KR + + Sbjct: 1 MSTFDEVFERIKLATNTR--TQVELAEVLDIRQSSISDAKRRNSVPSDWYMKLFEKFGLN 58 Query: 56 -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + K Q + + ++ S F G N Sbjct: 59 PDWLKKGSGPMYLRTDQGYEPLDAPVAGLVLEDPARYGDPDAKSSVATVFAMGCAVDENG 118 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLI 173 + + +A + +M P+ KG + +++ + + G+ + Sbjct: 119 VSQPLTAIAKLAVPQSFAAPGTQ-IVRVDAGAMEPVIGKGAFVGIDTTQKNIVSGELYGV 177 Query: 174 KPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + K + L + N +P + + RI+W Q Sbjct: 178 FMPFEGVAIKRVFLDAANARFILRTENPTHPEQYLPIDQHADRIFGRIVWVLQ 230 >gi|160946037|ref|ZP_02093263.1| hypothetical protein FAEPRAM212_03570 [Faecalibacterium prausnitzii M21/2] gi|158443768|gb|EDP20773.1| hypothetical protein FAEPRAM212_03570 [Faecalibacterium prausnitzii M21/2] Length = 358 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 72/260 (27%), Gaps = 60/260 (23%) Query: 7 KKIWEAIDRMAERHNLTP---SGLARKAGLDPT--SFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + + +R+ + S L R G+D + +K ++ PS + I Sbjct: 111 NEVGLILAAVRKRNGYSLVTFSELLRHYGVDVSDKGISKWEKGYTT-----PSIYQLVAI 165 Query: 62 LAATNETI-------------------------CQLLDLPFSDGRTTEKKEKEIPLLYFP 96 A N ++ + + ++ +I + P Sbjct: 166 CHALNIKEGPSYFTKTFQKPALLNAIGQKKVAEYEMDLIASRRYQPGTEEPAKIDCIMMP 225 Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 S G F G + + VP P + SM P Y G I Sbjct: 226 VSELPVSAGLGAFLEGEMFQQIQVPASSVPA-------GAEFGIYVSGDSMEPRYHSGQI 278 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS----------------IDLMSLNC 200 + + ++ CGD + K L+SLN Sbjct: 279 VWVKRCEELECGDIGIFVYDDCG-YLKKYDEHTPDKSQAEFFTDSYGVVHNQPVLVSLNT 337 Query: 201 CYPVDTVEMSD-IEWIARIL 219 Y + E + ++L Sbjct: 338 KYSPILISPEQRFEVVGKVL 357 >gi|310287284|ref|YP_003938542.1| peptidase S24-like domain [Bifidobacterium bifidum S17] gi|309251220|gb|ADO52968.1| Conserved hypothetical protein with peptidase S24-like domain [Bifidobacterium bifidum S17] Length = 131 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 3/100 (3%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E S + SM GD L+++ ++ GD ++ G+ Sbjct: 21 EEGFSLDAHVIEHPEYTFIVTVAGDSMEGAGIFHGDWLVVDRSLTPEDGDVVVAVLD-GE 79 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L+SR L + N YP I ++ Sbjct: 80 LTVKRLLSR-DGRPMLHAENPRYPDFVPSEHGDVVIWGVV 118 >gi|294673651|ref|YP_003574267.1| prophage PRU01 UmuD protein [Prevotella ruminicola 23] gi|294473678|gb|ADE83067.1| prophage PRU01, umuD protein [Prevotella ruminicola 23] Length = 153 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 42/140 (30%), Gaps = 5/140 (3%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 KK KE + S G + + + + + Sbjct: 1 MKKMKEPDIQKADVSTELELPMYDAIAAGFPITSDYPADRLDFNRDFIKHPESTFYVRVK 60 Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS--RRGRSIDLMSLNC 200 SM GD+ +++ A ++ G+ + G K L + + I L+ N Sbjct: 61 GDSMKEAGIFDGDLCLVDKAEEMVHGNIV-AAYVNGGFTVKYLDTSTKDQGFIRLVPANK 119 Query: 201 CYPVDTVE-MSDIEWIARIL 219 + ++ + +++ Sbjct: 120 DFKPFIIDSSDEFTVWGKVI 139 >gi|149908619|ref|ZP_01897281.1| LexA repressor [Moritella sp. PE36] gi|149808453|gb|EDM68390.1| LexA repressor [Moritella sp. PE36] Length = 207 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 39/226 (17%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55 M + + ++ + E + + + + P + +A++ G R P+ Sbjct: 1 MKALTQRQAEVLELVKQHIKNTGMPPTRAEIAKELGF-----------------RSPNAA 43 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E K LA + + + S G G G Sbjct: 44 EEHLKALARKGHIEI----------LAGTSRGLRLLVNAEDASNDKGLPLIGQVAAGEPI 93 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + D + + SM + GD+L ++ V+ G ++ + Sbjct: 94 LAQEHIEAHYNVDPSMFTPNADFLLRVRGESMRNIGIMDGDLLAVHKTKNVSKGQVVVAR 153 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216 ++ K ++G I L N V+++ DIE +A Sbjct: 154 VD-DEVTVKRF-EQQGNEILLHPENDEMSTIRVDLNFQSFDIEGVA 197 >gi|82776514|ref|YP_402863.1| DNA polymerase V subunit UmuD [Shigella dysenteriae Sd197] gi|301648166|ref|ZP_07247919.1| peptidase S24-like domain protein [Escherichia coli MS 146-1] gi|307137796|ref|ZP_07497152.1| DNA polymerase V subunit UmuD [Escherichia coli H736] gi|309789205|ref|ZP_07683798.1| UmuD protein [Shigella dysenteriae 1617] gi|331641709|ref|ZP_08342844.1| protein UmuD [Escherichia coli H736] gi|331652213|ref|ZP_08353232.1| protein UmuD [Escherichia coli M718] gi|81240662|gb|ABB61372.1| UmuD [Shigella dysenteriae Sd197] gi|301073752|gb|EFK88558.1| peptidase S24-like domain protein [Escherichia coli MS 146-1] gi|308922959|gb|EFP68473.1| UmuD protein [Shigella dysenteriae 1617] gi|315615980|gb|EFU96606.1| UmuD protein [Escherichia coli 3431] gi|331038507|gb|EGI10727.1| protein UmuD [Escherichia coli H736] gi|331050491|gb|EGI22549.1| protein UmuD [Escherichia coli M718] Length = 139 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132 >gi|153951225|ref|YP_001397532.1| putative phage repressor protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938671|gb|ABS43412.1| putative phage repressor protein [Campylobacter jejuni subsp. doylei 269.97] Length = 244 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 57/194 (29%), Gaps = 18/194 (9%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + K + + + P + I + A + +++ + Sbjct: 45 SEATIKKWLMSKEDNKTK-PKPQYIKILCNALDIPFNEVILQDVFRNDNQVDFRYFPDIY 103 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 G+ + V V E I+ K SM P+ Sbjct: 104 ASAGFGTSSQSEEVKI--------VSVDENFLKEILDIPIKKSYDIIKINGDSMEPILSN 155 Query: 154 GDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVE 208 GD +I++ + ++ D ++ + D+ K + I L+S N Y V+ Sbjct: 156 GDFIIVDRSKNSLGAISNADIVIFRKN-DDLFCKKIKKEPFEDYIFLVSENKKYEDRKVD 214 Query: 209 M---SDIEWIARIL 219 E + ++ Sbjct: 215 NVEFEQCEILGAVV 228 >gi|116327807|ref|YP_797527.1| repressor lexA [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331539|ref|YP_801257.1| repressor lexA [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280716|sp|Q04RH1|LEXA_LEPBJ RecName: Full=LexA repressor gi|122284398|sp|Q053A1|LEXA_LEPBL RecName: Full=LexA repressor gi|116120551|gb|ABJ78594.1| Repressor lexA [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125228|gb|ABJ76499.1| Repressor lexA [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 203 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 32/224 (14%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + K+ + I + + P+ + + G+ Sbjct: 1 MKDLTDKQQAVLAFITTIIKERGFPPTIREIGDEFGITAK-----------------GAY 43 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K + + E P +F N + Sbjct: 44 DHLKAIEKKGYLKTAKNQSRAIELIRQSPMESIPVQATSIPVIGRVAAGLPIFADENIES 103 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + VP+ + N + Q SM+ + GDI I+ G+ ++ Sbjct: 104 YIPVPDEMAKGNVP------MYALRVQGDSMIEVGIDSGDIAIIEKRDIARNGEIVVALI 157 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + KV + + I L + N Y + + I +++ Sbjct: 158 -EDEATLKVYYKEQDQ-IRLEARNPKYKPIKTKKA--TVIGKLV 197 >gi|46581311|ref|YP_012119.1| umuD protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450732|gb|AAS97379.1| umuD protein [Desulfovibrio vulgaris str. Hildenborough] Length = 164 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + ++ I + SML GD+L+++ A+ G R++ Sbjct: 55 ADDYID--RSLDLNDHIVKHPAATFYVRASGESMLGAGVHDGDLLVVDRALDPRPG-RVV 111 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218 I G++ K L+ G + L N YP + D+E + Sbjct: 112 IAAVDGELTVKRLVR-EGGRLLLAPENAAYPPLDITGREDVEVWGVV 157 >gi|331672716|ref|ZP_08373502.1| protein UmuD [Escherichia coli TA280] gi|331069937|gb|EGI41306.1| protein UmuD [Escherichia coli TA280] Length = 139 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLILHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132 >gi|87119978|ref|ZP_01075874.1| prophage MuSo2, transcriptional regulator, Cro/CI family protein [Marinomonas sp. MED121] gi|86164680|gb|EAQ65949.1| prophage MuSo2, transcriptional regulator, Cro/CI family protein [Marinomonas sp. MED121] Length = 253 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 4/89 (4%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + SM P D L+++ + + I ++ K S + Sbjct: 158 EKDLVIVWAKGDSMEPTINNNDTLVVHVGRKRPKDGHIYIFRCEDELFVKRYQSV-VGTW 216 Query: 194 DLMSLNCCYPVDTVEMSD---IEWIARIL 219 L+S N Y ++ + E I +++ Sbjct: 217 RLISDNHMYTPLDIKKEEQHQFEVIGQVV 245 >gi|86143064|ref|ZP_01061486.1| regulatory protein [Leeuwenhoekiella blandensis MED217] gi|85830509|gb|EAQ48968.1| regulatory protein [Leeuwenhoekiella blandensis MED217] Length = 244 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 66/208 (31%), Gaps = 20/208 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + E +L+ +A + G+ +++ + +TE + + + Sbjct: 3 ISKQLKTLRESSSLSQKKVAEELGITQGAYSLIENGQN-----SITTEHLLTLSKL--YS 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L S L + +G N+ N + + Sbjct: 56 VPTDRILKGSHNSIMMSSSNGFVPLINVEARAGF--------IENRDNEQWMSTLDMFKL 107 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI---QVNCGDRLLIKPRTGDIVAKVL 185 Y + + SM P GDILI ++ G +I + K + Sbjct: 108 PGYEPAQGQKLFEVEGDSMAPTLMHGDILITQHTDDLNEILDGSVAVIVTTKSVLT-KRI 166 Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDI 212 ++ L+S N Y + +M +I Sbjct: 167 KKDLPNNALILISDNSKYESISYDMENI 194 >gi|332092221|gb|EGI97298.1| protein umuD [Shigella boydii 5216-82] Length = 139 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132 >gi|307126175|ref|YP_003878206.1| cI repressor [Streptococcus pneumoniae 670-6B] gi|306483237|gb|ADM90106.1| cI repressor [Streptococcus pneumoniae 670-6B] Length = 238 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 37/238 (15%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I R+ L P LA T+ N + R E + + + Sbjct: 3 DNIKRLLSAKGLNPRQLAIALDFKYTTVNDWVN--AKTYPRIDKIEMLANFFNVSKSDLV 60 Query: 71 QLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVG--- 119 + + + ++ L + + + + + Sbjct: 61 ENKNAETPTTSPIQSIYDQLTPPRQEKALTYLKKQLLEQKNENIVSENIISLDDYRESKT 120 Query: 120 VPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRKGDILILNSA 162 +P I I SM P + GD L + + Sbjct: 121 LPVIGVVTAGNGITQDDNLNMEKCFYTDEIPDDYDAIAYVVGNSMEPKIKNGDYLFIKNT 180 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 QV+ + + G K L + L SLN ++ S DI I ++ Sbjct: 181 PQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDCADIQLDESNDIRTIGEVV 232 >gi|302875630|ref|YP_003844263.1| Peptidase S24/S26A/S26B, conserved region [Clostridium cellulovorans 743B] gi|307690163|ref|ZP_07632609.1| Peptidase S24/S26A/S26B, conserved region [Clostridium cellulovorans 743B] gi|302578487|gb|ADL52499.1| Peptidase S24/S26A/S26B, conserved region [Clostridium cellulovorans 743B] Length = 648 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 4/130 (3%) Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSM 147 E + S G+ + + K SM Sbjct: 512 EDSYVDVEESELKRIPVFNNIAAGSPILINEEESDGFFLPKAFLKNNKEFFMLKVSGDSM 571 Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 + D +I+ + QV+ + + K + +G S+ L+S N YP Sbjct: 572 INANLNNEDYVIIERSAQVDNMQIAAVAI-GEEATLKRI-KIKGNSVTLISENQNYPPMM 629 Query: 207 VEMSDIEWIA 216 V D+ + Sbjct: 630 VHSKDVRILG 639 >gi|88705077|ref|ZP_01102789.1| LexA repressor [Congregibacter litoralis KT71] gi|88700772|gb|EAQ97879.1| LexA repressor [Congregibacter litoralis KT71] Length = 200 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 62/217 (28%), Gaps = 40/217 (18%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I R + P + +A++ G + + E Sbjct: 1 MLKLTARQEQVLDVIRRHIGATGMPPTRADIAKELGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA G G G Sbjct: 45 EHLKALARKGAIEIVPGASRGIRLPE-----------------DAGLPIVGKVAAGEPIL 87 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + + SM+ + GD+L ++S + G ++ + Sbjct: 88 AAENVEDHCAVDPSMFHPPADYLLRVEGDSMINVGIHDGDLLAVHSTPVADNGAIVVARI 147 Query: 176 RTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L R R + L+ N TV+++D Sbjct: 148 D-DEVTVKRLKRGRDKRHLQLLPENDHLSPITVDLAD 183 >gi|300781920|ref|YP_003739155.1| SamA [Erwinia billingiae Eb661] gi|299060186|emb|CAX53376.1| Protein SamA [Erwinia billingiae Eb661] Length = 148 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 8/107 (7%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + V + + + +SM GD+++++ A + + GD ++ Sbjct: 40 DYVE--SELDLNELCIRRRASTFFVRASGSSMQELGLFDGDVMVVDRAEEASQGDIVI-A 96 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 G+ K L + + L+ +N YPV D++ + + W Sbjct: 97 EVNGEFTVKRLQLQP--CLALLPMNPAYPVIY--PEDLQLLGVVTWW 139 >gi|212704955|ref|ZP_03313083.1| hypothetical protein DESPIG_03022 [Desulfovibrio piger ATCC 29098] gi|212671619|gb|EEB32102.1| hypothetical protein DESPIG_03022 [Desulfovibrio piger ATCC 29098] Length = 229 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 23/231 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I+E I + T LA + +S + +KR + K+ Sbjct: 5 EIYERIK--LATNCRTQVELAELLNIRQSSISDAKRRDSVP------GDWYMKLFERFGL 56 Query: 68 TICQLLDLPFS--------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L + + + + + Sbjct: 57 NPDWLKYGVGPLYLRTDKGYCPQEAPQALAETVACYGDDFTRSTVVDVYDMACVYTDEAP 116 Query: 120 VPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKP 175 P + ++ + + +M PL R+G + ++ G + Sbjct: 117 RPALSISGRVPLPQAFLRPSLQVLRLRGQAMEPLLREGAYIGVDMEDLAPVSGRTYALFA 176 Query: 176 RTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223 +V + + + L + + YP +++ + + R++W Q Sbjct: 177 PLEGVVVRQVFLDGSQRGYVLRAQSPDYPETSLDAALLQRRMLGRVVWTFQ 227 >gi|119961687|ref|YP_947146.1| SOS mutagenesis protein UmuD [Arthrobacter aurescens TC1] gi|119948546|gb|ABM07457.1| putative SOS mutagenesis protein UmuD [Arthrobacter aurescens TC1] Length = 143 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 4/98 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + T + SM GD LI+N A++ G ++ Sbjct: 37 YFDGRIDLNEHLIKDVTSTFVVRVTGQSMEGAGISDGDELIVNRALEPKDGSVVVAVLD- 95 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G++ K L + L + N YP V S++ Sbjct: 96 GELTIKRL-RVTPSGVILQADNPKYPDIRVPALSELTI 132 >gi|221194461|ref|ZP_03567518.1| LexA repressor [Atopobium rimae ATCC 49626] gi|221185365|gb|EEE17755.1| LexA repressor [Atopobium rimae ATCC 49626] Length = 218 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 22/204 (10%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFKILA 63 I+E I + H PS + + L P++ + + E +R P KI+ Sbjct: 13 IYEYICSYTDTHGYPPSVREIGKAVCLASPSTVHMHLKVLEELGFISRDPKKPRTMKIV- 71 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + Q + S + +P++ +G+ N + + +P Sbjct: 72 TNQTSDNQSTNKLSSISQDLNSNVITLPVIGNVAAGTPI------LAEQNVEDKLSLPTS 125 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + SM+ GD +I+ + + G ++ Sbjct: 126 IVG-------DSSTFILRVHGESMINAGIFDGDYIIVKEQAEAHDGQIVVALID-DSATV 177 Query: 183 KVLISRRGRSIDLMSLNCCYPVDT 206 K + I L N Sbjct: 178 KTFYREKD-RIRLQPENDTMAPIY 200 >gi|254673413|emb|CBA08743.1| prophage MuMc02, peptidase, family S24 [Neisseria meningitidis alpha275] Length = 213 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 17/198 (8%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 + +A + F++ G P +E++ KI +I LL + Sbjct: 18 QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72 Query: 84 EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAI---- 133 K+ G + + Sbjct: 73 APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132 Query: 134 -QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD +++N + D L + +++ K L G Sbjct: 133 NTKNLSVISVKGDSMEGVLNDGDSILVNHSENT-PRDGLYVLRINENLLVKRLQIVPGGI 191 Query: 193 IDLMSLNCCYPVDTVEMS 210 I+++S N YP + ++ Sbjct: 192 INVISANEAYPAFEINLN 209 >gi|301167041|emb|CBW26620.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC [Bacteriovorax marinus SJ] Length = 143 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 3/107 (2%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + V S + + SMLP + GDILI++ + +V + + Sbjct: 31 GISDDFVESYLSLDELFMRNRESTFFVRASGDSMLPEIKNGDILIVDRSYKVLDQSIVAV 90 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + K L I L SLN Y + + +++ ++ Sbjct: 91 FHNGNPLCKKFLQRE--NHILLRSLNKKYSDIQICDDDELQVFGVVI 135 >gi|126640703|ref|YP_001083687.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978] gi|126386587|gb|ABO11085.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978] Length = 167 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + K SM+ D L+++ +++ D ++ + Sbjct: 62 MDMNEHLIRNEAATFIVKVCSLSMINAGIDINDELVVDRSLEAKNNDIVVALI-ENEFTV 120 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L G I L + N Y + ++ Sbjct: 121 KRL-KIEGSKIWLKAENPDYQDIYFNEGQKLIVWGVV 156 >gi|317491869|ref|ZP_07950304.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920303|gb|EFV41627.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 139 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 9/113 (7%) Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 P G + + P + + A + SM+ + G +L+ Sbjct: 16 PLYDDRVPAGFPSPAADYIDKP--IDLNELLIAHPAATYFVRVAGDSMVGIGIFDGSLLL 73 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++S+I+ D ++ G+ K ++ L++ N YP + + Sbjct: 74 VDSSIRPKHNDIIIAC-LGGEFTVKRYVTHP--RTRLLAENPAYPPIELHEGE 123 >gi|225860041|ref|YP_002741550.1| cI repressor [Streptococcus pneumoniae Taiwan19F-14] gi|298229463|ref|ZP_06963144.1| cI repressor [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255147|ref|ZP_06978733.1| cI repressor [Streptococcus pneumoniae str. Canada MDR_19A] gi|225727071|gb|ACO22922.1| cI repressor [Streptococcus pneumoniae Taiwan19F-14] Length = 238 Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 59/238 (24%), Gaps = 37/238 (15%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I R+ L P LA T+ N + R E + + + Sbjct: 3 DNIKRLLSAKGLNPRQLAIALDFKYTTVNDWVN--AKTYPRIDKIEMLANFFNVSKSDLV 60 Query: 71 QL-----------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + K + + + + Sbjct: 61 ENKNAETPTTSLIQSIYDQLTPPRQAKALTYLKKQLLEQKNENIVSENIISLDDYRESKT 120 Query: 120 VPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRKGDILILNSA 162 +P I I SM P + GD L + + Sbjct: 121 LPVIGVVTAGNGITQDDNLNIEKCFYTDEIPDDYDAIAYVVGNSMEPKIKNGDYLFIKNT 180 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 QV+ + + G K L + L SLN ++ S DI I ++ Sbjct: 181 PQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDCADIQLDESNDIRTIGEVV 232 >gi|294673887|ref|YP_003574503.1| UmuD protein [Prevotella ruminicola 23] gi|294473803|gb|ADE83192.1| umuD protein [Prevotella ruminicola 23] Length = 150 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/122 (10%), Positives = 36/122 (29%), Gaps = 5/122 (4%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILN 160 G + + + + + SM GD+ +++ Sbjct: 16 ELPMYDAIAAGFPITSDYPADRLDFNRDFIKHPESTFYVRVKGDSMKEAGIFDGDLCLVD 75 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLIS--RRGRSIDLMSLNCCYPVDTVE-MSDIEWIAR 217 A ++ G+ + G K L + + I L+ N + ++ + + Sbjct: 76 KAEEMEHGNIV-AAYVNGGFTVKYLDTSTKDQGFIRLVPANKDFKPFIIDSSDEFTVWGK 134 Query: 218 IL 219 ++ Sbjct: 135 VI 136 >gi|149178259|ref|ZP_01856852.1| LexA repressor [Planctomyces maris DSM 8797] gi|148842908|gb|EDL57278.1| LexA repressor [Planctomyces maris DSM 8797] Length = 202 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 11/103 (10%), Positives = 32/103 (31%), Gaps = 7/103 (6%) Query: 120 VPEIRSPHNGIYAI---QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 +P ++ + K + SM ++GD +++ G+ ++ Sbjct: 95 IPPAADDSQVDFSALFESGDNFCLKVKGNSMIEAQIQEGDFVVVKKQDTCQQGEIVVALV 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + + L N +D++ + + Sbjct: 155 DNQEATLKRFY-QEADRVRLEPANSTMSPIY--STDVQVLGVV 194 >gi|124007647|ref|ZP_01692351.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] gi|123986945|gb|EAY26710.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] Length = 275 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 72/232 (31%), Gaps = 30/232 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I E++ +T LA G+ ++ + + E P + KI +I Sbjct: 7 LRYIRE--EKYKITQGALAEILGVSRSALSAYEDGRAE-----PRILLLIKIAQYFAVSI 59 Query: 70 CQLLDLP------------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 +++++ + + +I + S + + + Sbjct: 60 DEMVNVNFAEAEQAYVTRIEQLNKYITAHQIKINRVQTEHSTPKDYLELVPQKATAGYTQ 119 Query: 118 VGVPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGD 169 Y I + SMLP + G I+I + + + G Sbjct: 120 GFANPEYLNTLPKYKIPFLSKGKIYRAFEIDGDSMLP-LQSGAIVIGEKIANWDDLTSGQ 178 Query: 170 RLLIKPRTGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + IV K + R + L S N Y +E ++I + + + Sbjct: 179 TCVVVSKHEGIVLKKVYKRLFDYGKLLLKSENISYRPYEIEATEILELWKFV 230 >gi|254526260|ref|ZP_05138312.1| SOS-response transcriptional repressor [Prochlorococcus marinus str. MIT 9202] gi|221537684|gb|EEE40137.1| SOS-response transcriptional repressor [Prochlorococcus marinus str. MIT 9202] Length = 137 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 4/103 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + + + + + SM+ + D++I++ ++ G+ ++ Sbjct: 31 YTEENIDLNEHLISNPFSTFFLRVKGDSMINAGIKDKDLIIVDKSLIAKPGNIIIAMID- 89 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G+ K L + + L + N YP + D++ ++ Sbjct: 90 GEFTIKRLSIKNDE-LYLKAENNNYPDFRFKNHIDVQIWGVVI 131 >gi|15801405|ref|NP_287422.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 EDL933] gi|15830932|ref|NP_309705.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str. Sakai] gi|16129146|ref|NP_415701.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr. MG1655] gi|24112570|ref|NP_707080.1| DNA polymerase V subunit UmuD [Shigella flexneri 2a str. 301] gi|30062700|ref|NP_836871.1| DNA polymerase V subunit UmuD [Shigella flexneri 2a str. 2457T] gi|74311713|ref|YP_310132.1| DNA polymerase V subunit UmuD [Shigella sonnei Ss046] gi|82544364|ref|YP_408311.1| DNA polymerase V subunit UmuD [Shigella boydii Sb227] gi|89108028|ref|AP_001808.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr. W3110] gi|110641408|ref|YP_669138.1| DNA polymerase V subunit UmuD [Escherichia coli 536] gi|110805182|ref|YP_688702.1| DNA polymerase V subunit UmuD [Shigella flexneri 5 str. 8401] gi|157159399|ref|YP_001462433.1| DNA polymerase V subunit UmuD [Escherichia coli E24377A] gi|157160686|ref|YP_001458004.1| DNA polymerase V subunit UmuD [Escherichia coli HS] gi|168752764|ref|ZP_02777786.1| protein UmuD [Escherichia coli O157:H7 str. EC4113] gi|168756548|ref|ZP_02781555.1| protein UmuD [Escherichia coli O157:H7 str. EC4401] gi|168771074|ref|ZP_02796081.1| protein UmuD [Escherichia coli O157:H7 str. EC4486] gi|168778216|ref|ZP_02803223.1| protein UmuD [Escherichia coli O157:H7 str. EC4196] gi|168782541|ref|ZP_02807548.1| protein UmuD [Escherichia coli O157:H7 str. EC4076] gi|168787684|ref|ZP_02812691.1| protein UmuD [Escherichia coli O157:H7 str. EC869] gi|170020449|ref|YP_001725403.1| DNA polymerase V subunit UmuD [Escherichia coli ATCC 8739] gi|170080811|ref|YP_001730131.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr. DH10B] gi|187732911|ref|YP_001879965.1| DNA polymerase V subunit UmuD [Shigella boydii CDC 3083-94] gi|188493785|ref|ZP_03001055.1| protein UmuD [Escherichia coli 53638] gi|191169122|ref|ZP_03030882.1| protein UmuD [Escherichia coli B7A] gi|191170936|ref|ZP_03032487.1| protein UmuD [Escherichia coli F11] gi|193066783|ref|ZP_03047799.1| protein UmuD [Escherichia coli E22] gi|193071165|ref|ZP_03052088.1| protein UmuD [Escherichia coli E110019] gi|194430792|ref|ZP_03063189.1| protein UmuD [Escherichia coli B171] gi|194437085|ref|ZP_03069184.1| protein UmuD [Escherichia coli 101-1] gi|195938838|ref|ZP_03084220.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str. EC4024] gi|208809140|ref|ZP_03251477.1| protein UmuD [Escherichia coli O157:H7 str. EC4206] gi|208815181|ref|ZP_03256360.1| protein UmuD [Escherichia coli O157:H7 str. EC4045] gi|208822366|ref|ZP_03262685.1| protein UmuD [Escherichia coli O157:H7 str. EC4042] gi|209400795|ref|YP_002270123.1| protein UmuD [Escherichia coli O157:H7 str. EC4115] gi|209918422|ref|YP_002292506.1| DNA polymerase V subunit UmuD [Escherichia coli SE11] gi|217328507|ref|ZP_03444589.1| protein UmuD [Escherichia coli O157:H7 str. TW14588] gi|218553738|ref|YP_002386651.1| DNA polymerase V subunit UmuD [Escherichia coli IAI1] gi|218694697|ref|YP_002402364.1| DNA polymerase V subunit UmuD [Escherichia coli 55989] gi|218704698|ref|YP_002412217.1| DNA polymerase V subunit UmuD [Escherichia coli UMN026] gi|238900414|ref|YP_002926210.1| DNA polymerase V, subunit D [Escherichia coli BW2952] gi|253773819|ref|YP_003036650.1| DNA polymerase V subunit UmuD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161265|ref|YP_003044373.1| DNA polymerase V subunit UmuD [Escherichia coli B str. REL606] gi|254792660|ref|YP_003077497.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str. TW14359] gi|256018567|ref|ZP_05432432.1| DNA polymerase V subunit UmuD [Shigella sp. D9] gi|256023141|ref|ZP_05437006.1| DNA polymerase V subunit UmuD [Escherichia sp. 4_1_40B] gi|260843475|ref|YP_003221253.1| DNA polymerase V subunit D [Escherichia coli O103:H2 str. 12009] gi|260854844|ref|YP_003228735.1| DNA polymerase V subunit D [Escherichia coli O26:H11 str. 11368] gi|261224920|ref|ZP_05939201.1| DNA polymerase V, subunit D [Escherichia coli O157:H7 str. FRIK2000] gi|261257223|ref|ZP_05949756.1| DNA polymerase V subunit D [Escherichia coli O157:H7 str. FRIK966] gi|291282198|ref|YP_003499016.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. CB9615] gi|293404718|ref|ZP_06648710.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1412] gi|293409561|ref|ZP_06653137.1| DNA polymerase V subunit UmuD [Escherichia coli B354] gi|293414453|ref|ZP_06657102.1| DNA polymerase V subunit UmuD [Escherichia coli B185] gi|293433501|ref|ZP_06661929.1| DNA polymerase V subunit UmuD [Escherichia coli B088] gi|297516123|ref|ZP_06934509.1| DNA polymerase V subunit UmuD [Escherichia coli OP50] gi|298380361|ref|ZP_06989960.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1302] gi|300816870|ref|ZP_07097090.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|300821050|ref|ZP_07101199.1| peptidase S24-like domain protein [Escherichia coli MS 119-7] gi|300896557|ref|ZP_07115078.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|300906914|ref|ZP_07124588.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300917942|ref|ZP_07134573.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] gi|300921855|ref|ZP_07138012.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] gi|300928274|ref|ZP_07143811.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|300951645|ref|ZP_07165469.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] gi|300955578|ref|ZP_07167937.1| peptidase S24-like domain protein [Escherichia coli MS 175-1] gi|300996032|ref|ZP_07181366.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|301017203|ref|ZP_07181984.1| peptidase S24-like domain protein [Escherichia coli MS 69-1] gi|301029520|ref|ZP_07192600.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|301307334|ref|ZP_07213343.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|301327108|ref|ZP_07220388.1| peptidase S24-like domain protein [Escherichia coli MS 78-1] gi|307310063|ref|ZP_07589713.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W] gi|309794268|ref|ZP_07688692.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] gi|312971365|ref|ZP_07785540.1| protein umuD [Escherichia coli 1827-70] gi|331657227|ref|ZP_08358189.1| protein UmuD [Escherichia coli TA206] gi|331662576|ref|ZP_08363499.1| protein UmuD [Escherichia coli TA143] gi|331667564|ref|ZP_08368428.1| protein UmuD [Escherichia coli TA271] gi|331676959|ref|ZP_08377655.1| protein UmuD [Escherichia coli H591] gi|332279629|ref|ZP_08392042.1| UmuD protein [Shigella sp. D9] gi|84029417|sp|P0AG12|UMUD_ECO57 RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD' gi|84029418|sp|P0AG11|UMUD_ECOLI RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD' gi|84029419|sp|P0AG13|UMUD_SHIFL RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD' gi|12514880|gb|AAG56034.1|AE005335_7 SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC [Escherichia coli O157:H7 str. EDL933] gi|148125|gb|AAA24728.1| UmuD protein [Escherichia coli] gi|148128|gb|AAA98073.1| umuD [Escherichia coli] gi|1651580|dbj|BAA36030.1| DNA polymerase V, subunit D [Escherichia coli str. K12 substr. W3110] gi|1787431|gb|AAC74267.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr. MG1655] gi|13361142|dbj|BAB35101.1| UmuD protein [Escherichia coli O157:H7 str. Sakai] gi|24051468|gb|AAN42787.1| mutagenesis and repair protein [Shigella flexneri 2a str. 301] gi|30040948|gb|AAP16678.1| mutagenesis and repair protein [Shigella flexneri 2a str. 2457T] gi|73855190|gb|AAZ87897.1| UmuD [Shigella sonnei Ss046] gi|81245775|gb|ABB66483.1| UmuD [Shigella boydii Sb227] gi|110343000|gb|ABG69237.1| UmuD protein [Escherichia coli 536] gi|110614730|gb|ABF03397.1| SOS mutagenesis [Shigella flexneri 5 str. 8401] gi|157066366|gb|ABV05621.1| protein UmuD [Escherichia coli HS] gi|157081429|gb|ABV21137.1| protein UmuD [Escherichia coli E24377A] gi|169755377|gb|ACA78076.1| peptidase S24 and S26 domain protein [Escherichia coli ATCC 8739] gi|169888646|gb|ACB02353.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr. DH10B] gi|187429903|gb|ACD09177.1| protein UmuD [Shigella boydii CDC 3083-94] gi|187766778|gb|EDU30622.1| protein UmuD [Escherichia coli O157:H7 str. EC4196] gi|188013531|gb|EDU51653.1| protein UmuD [Escherichia coli O157:H7 str. EC4113] gi|188488984|gb|EDU64087.1| protein UmuD [Escherichia coli 53638] gi|189000043|gb|EDU69029.1| protein UmuD [Escherichia coli O157:H7 str. EC4076] gi|189356367|gb|EDU74786.1| protein UmuD [Escherichia coli O157:H7 str. EC4401] gi|189360079|gb|EDU78498.1| protein UmuD [Escherichia coli O157:H7 str. EC4486] gi|189372424|gb|EDU90840.1| protein UmuD [Escherichia coli O157:H7 str. EC869] gi|190900836|gb|EDV60625.1| protein UmuD [Escherichia coli B7A] gi|190908668|gb|EDV68256.1| protein UmuD [Escherichia coli F11] gi|192925573|gb|EDV80251.1| protein UmuD [Escherichia coli E22] gi|192955497|gb|EDV85977.1| protein UmuD [Escherichia coli E110019] gi|194411164|gb|EDX27589.1| protein UmuD [Escherichia coli B171] gi|194424068|gb|EDX40056.1| protein UmuD [Escherichia coli 101-1] gi|208728941|gb|EDZ78542.1| protein UmuD [Escherichia coli O157:H7 str. EC4206] gi|208731829|gb|EDZ80517.1| protein UmuD [Escherichia coli O157:H7 str. EC4045] gi|208737851|gb|EDZ85534.1| protein UmuD [Escherichia coli O157:H7 str. EC4042] gi|209162195|gb|ACI39628.1| protein UmuD [Escherichia coli O157:H7 str. EC4115] gi|209772708|gb|ACI84666.1| UmuD protein [Escherichia coli] gi|209772710|gb|ACI84667.1| UmuD protein [Escherichia coli] gi|209772712|gb|ACI84668.1| UmuD protein [Escherichia coli] gi|209772714|gb|ACI84669.1| UmuD protein [Escherichia coli] gi|209772716|gb|ACI84670.1| UmuD protein [Escherichia coli] gi|209911681|dbj|BAG76755.1| mutagenesis and repair protein UmuD [Escherichia coli SE11] gi|217318934|gb|EEC27360.1| protein UmuD [Escherichia coli O157:H7 str. TW14588] gi|218351429|emb|CAU97137.1| DNA polymerase V, subunit D [Escherichia coli 55989] gi|218360506|emb|CAQ98062.1| DNA polymerase V, subunit D [Escherichia coli IAI1] gi|218431795|emb|CAR12680.1| DNA polymerase V, subunit D [Escherichia coli UMN026] gi|238860840|gb|ACR62838.1| DNA polymerase V, subunit D [Escherichia coli BW2952] gi|242376963|emb|CAQ31685.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC, subunit of DNA polymerase V [Escherichia coli BL21(DE3)] gi|253324863|gb|ACT29465.1| peptidase S24 and S26 domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973166|gb|ACT38837.1| DNA polymerase V, subunit D [Escherichia coli B str. REL606] gi|253977380|gb|ACT43050.1| DNA polymerase V, subunit D [Escherichia coli BL21(DE3)] gi|254592060|gb|ACT71421.1| DNA polymerase V, subunit D [Escherichia coli O157:H7 str. TW14359] gi|257753493|dbj|BAI24995.1| DNA polymerase V subunit D [Escherichia coli O26:H11 str. 11368] gi|257758622|dbj|BAI30119.1| DNA polymerase V subunit D [Escherichia coli O103:H2 str. 12009] gi|260449683|gb|ACX40105.1| peptidase S24 and S26 domain protein [Escherichia coli DH1] gi|281600596|gb|ADA73580.1| DNA polymerase V subunit [Shigella flexneri 2002017] gi|284920987|emb|CBG34052.1| SOS mutagenesis and repair protein [Escherichia coli 042] gi|290762071|gb|ADD56032.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. CB9615] gi|291324320|gb|EFE63742.1| DNA polymerase V subunit UmuD [Escherichia coli B088] gi|291426926|gb|EFE99952.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1412] gi|291434511|gb|EFF07484.1| DNA polymerase V subunit UmuD [Escherichia coli B185] gi|291470029|gb|EFF12513.1| DNA polymerase V subunit UmuD [Escherichia coli B354] gi|298277803|gb|EFI19317.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1302] gi|299877584|gb|EFI85795.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|300304639|gb|EFJ59159.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|300317554|gb|EFJ67338.1| peptidase S24-like domain protein [Escherichia coli MS 175-1] gi|300359586|gb|EFJ75456.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|300400334|gb|EFJ83872.1| peptidase S24-like domain protein [Escherichia coli MS 69-1] gi|300401347|gb|EFJ84885.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300414855|gb|EFJ98165.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] gi|300421781|gb|EFK05092.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] gi|300449091|gb|EFK12711.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] gi|300463743|gb|EFK27236.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|300526349|gb|EFK47418.1| peptidase S24-like domain protein [Escherichia coli MS 119-7] gi|300530644|gb|EFK51706.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|300837480|gb|EFK65240.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|300846286|gb|EFK74046.1| peptidase S24-like domain protein [Escherichia coli MS 78-1] gi|306909781|gb|EFN40275.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W] gi|308122173|gb|EFO59435.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] gi|309701483|emb|CBJ00790.1| SOS mutagenesis and repair protein [Escherichia coli ETEC H10407] gi|310335962|gb|EFQ01162.1| protein umuD [Escherichia coli 1827-70] gi|313649361|gb|EFS13792.1| UmuD protein [Shigella flexneri 2a str. 2457T] gi|315060433|gb|ADT74760.1| DNA polymerase V, subunit D [Escherichia coli W] gi|315135819|dbj|BAJ42978.1| DNA polymerase V subunit UmuD [Escherichia coli DH1] gi|315254862|gb|EFU34830.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] gi|320181810|gb|EFW56720.1| Error-prone repair protein UmuD [Shigella boydii ATCC 9905] gi|320183054|gb|EFW57918.1| Error-prone repair protein UmuD [Shigella flexneri CDC 796-83] gi|320187967|gb|EFW62634.1| Error-prone repair protein UmuD [Escherichia coli O157:H7 str. EC1212] gi|320195837|gb|EFW70462.1| Error-prone repair protein UmuD [Escherichia coli WV_060327] gi|320199220|gb|EFW73811.1| Error-prone repair protein UmuD [Escherichia coli EC4100B] gi|320637328|gb|EFX07135.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str. G5101] gi|320643189|gb|EFX12390.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H- str. 493-89] gi|320648126|gb|EFX16802.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H- str. H 2687] gi|320653960|gb|EFX22034.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659439|gb|EFX27008.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. USDA 5905] gi|320664576|gb|EFX31727.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str. LSU-61] gi|323153149|gb|EFZ39413.1| UmuD protein [Escherichia coli EPECa14] gi|323162294|gb|EFZ48152.1| protein umuD [Escherichia coli E128010] gi|323165667|gb|EFZ51454.1| protein umuD [Shigella sonnei 53G] gi|323172469|gb|EFZ58106.1| protein umuD [Escherichia coli LT-68] gi|323185656|gb|EFZ71017.1| protein umuD [Escherichia coli 1357] gi|323379004|gb|ADX51272.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli KO11] gi|323937901|gb|EGB34165.1| peptidase S24 [Escherichia coli E1520] gi|323942461|gb|EGB38629.1| peptidase S24 [Escherichia coli E482] gi|323947535|gb|EGB43539.1| peptidase S24 [Escherichia coli H120] gi|323962760|gb|EGB58338.1| peptidase S24 [Escherichia coli H489] gi|323964674|gb|EGB60145.1| peptidase S24 [Escherichia coli M863] gi|323973420|gb|EGB68607.1| peptidase S24 [Escherichia coli TA007] gi|323977255|gb|EGB72342.1| peptidase S24 [Escherichia coli TW10509] gi|324015677|gb|EGB84896.1| peptidase S24-like domain protein [Escherichia coli MS 60-1] gi|324017572|gb|EGB86791.1| peptidase S24-like domain protein [Escherichia coli MS 117-3] gi|324117269|gb|EGC11176.1| peptidase S24 [Escherichia coli E1167] gi|326342722|gb|EGD66492.1| Error-prone repair protein UmuD [Escherichia coli O157:H7 str. 1044] gi|326346428|gb|EGD70165.1| Error-prone repair protein UmuD [Escherichia coli O157:H7 str. 1125] gi|327253865|gb|EGE65494.1| protein umuD [Escherichia coli STEC_7v] gi|331055475|gb|EGI27484.1| protein UmuD [Escherichia coli TA206] gi|331060998|gb|EGI32962.1| protein UmuD [Escherichia coli TA143] gi|331065149|gb|EGI37044.1| protein UmuD [Escherichia coli TA271] gi|331075648|gb|EGI46946.1| protein UmuD [Escherichia coli H591] gi|332094406|gb|EGI99455.1| protein umuD [Shigella boydii 3594-74] gi|332101981|gb|EGJ05327.1| UmuD protein [Shigella sp. D9] gi|332342762|gb|AEE56096.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332757824|gb|EGJ88151.1| protein umuD [Shigella flexneri 4343-70] gi|332759425|gb|EGJ89733.1| protein umuD [Shigella flexneri 2747-71] gi|332760265|gb|EGJ90555.1| protein umuD [Shigella flexneri K-671] gi|332767406|gb|EGJ97600.1| UmuD protein [Shigella flexneri 2930-71] gi|333005615|gb|EGK25133.1| protein umuD [Shigella flexneri K-218] gi|333019357|gb|EGK38640.1| protein umuD [Shigella flexneri K-304] Length = 139 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132 >gi|170683779|ref|YP_001744018.1| DNA polymerase V subunit UmuD [Escherichia coli SMS-3-5] gi|218700236|ref|YP_002407865.1| DNA polymerase V subunit UmuD [Escherichia coli IAI39] gi|300939591|ref|ZP_07154248.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] gi|170521497|gb|ACB19675.1| protein UmuD [Escherichia coli SMS-3-5] gi|218370222|emb|CAR18018.1| DNA polymerase V, subunit D [Escherichia coli IAI39] gi|300455595|gb|EFK19088.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] Length = 139 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYIE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132 >gi|325300608|ref|YP_004260525.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides salanitronis DSM 18170] gi|324320161|gb|ADY38052.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides salanitronis DSM 18170] Length = 165 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 3/100 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + + SM GD+L+++ AI GD ++ G+ Sbjct: 56 ESIDLNRELVRHPATTFYARAVGDSMKDCGIDNGDLLVIDKAIDPQEGDIVVAYID-GEF 114 Query: 181 VAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + +G + LM N YP V + + +L Sbjct: 115 TLKRVKFDVKGDCLWLMPANKDYPPIKVTEENNFIVWGVL 154 >gi|239904824|ref|YP_002951562.1| hypothetical protein DMR_01850 [Desulfovibrio magneticus RS-1] gi|239794687|dbj|BAH73676.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 273 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 60/244 (24%), Gaps = 34/244 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-----------------W 52 W+A+ +A + LA AG +K + Sbjct: 25 WKALVELAAAQEASQGELAAFAGASQGYVSKILAGKQAPKPALRRRLAAFFGLSYEDMLA 84 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE-----------IPLLYFPPSGSG 101 + + E + + +E + + + Sbjct: 85 FGRQRLDAAAYPAEEGASRRCQVREPAYGGSEATGRGGEALRAWLRDLHAREDRQSAYTE 144 Query: 102 GFFDSGVFPTGNKWNT-----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 G + R+ T + SM P G + Sbjct: 145 VPLREATASMGGGSTETGDRTLSYLSFRTDWIRSKGNPEYMTAIRAFGDSMEPTIADGSV 204 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++++ + +++ G + K LI G + + S + + D E I Sbjct: 205 VLIDEGRRQFVKNKVYYLRYNGQMYIKRLI-DAGGRLGIASDADANVLLVSDADDFEIIG 263 Query: 217 RILW 220 R +W Sbjct: 264 RCIW 267 >gi|187477795|ref|YP_785819.1| phage repressor [Bordetella avium 197N] gi|115422381|emb|CAJ48906.1| Putative phage repressor [Bordetella avium 197N] Length = 360 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 33/235 (14%) Query: 20 HNLTPSGLARKAG--------------LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 L+P+ L++ G + S +++++ G + E +I Sbjct: 120 RALSPTQLSKLEGALALALGQMEIGLEVSRPSVSQAQKRGGLVNMDTAADEFSMRIPGLP 179 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-------GGFFDSGVFPTGNKWNTV 118 P ++ + + G + Sbjct: 180 PGPSQIKEPAPAYVAPRLSLEQAVAVNVAPGEHHAANDKFERVPELADVRLAAGEGIENL 239 Query: 119 GVP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD--- 169 RS + A + + SM P+ R G L++ + + D Sbjct: 240 TEEMTGFVQFRRSFLRSVGADGGRGRVVYAKGDSMEPIIRDGAALLVVPDLGLTLRDVAA 299 Query: 170 -RLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221 + G ++ K + R S N +P T+E + + R++WA Sbjct: 300 GGVYAINYDGKMIVKTVARDRLTGRWVARSFNTQHPDITLEGDVSVRVLGRVVWA 354 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I + I ++ E+ L+ LA G+ + + + + E++ K L Sbjct: 30 IHQRIKQLREQRQLSMEQLAELVGVSWQTVQQWENGKTA--PKRARLEAVAKAL 81 >gi|89889519|ref|ZP_01201030.1| hypothetical protein BBFL7_01334 [Flavobacteria bacterium BBFL7] gi|89517792|gb|EAS20448.1| hypothetical protein BBFL7_01334 [Flavobacteria bacterium BBFL7] Length = 254 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 17/214 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ E T S A G ++ +R + + + + ++L L Sbjct: 13 KKVREELGKTQSEFAELLGAGSST-ADIERG-----KKKITGKIVTELLRQFFINPLWLY 66 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 ++ T + G N + + I Sbjct: 67 GNSYNKHLETTASTAPKIISMNSSDRENMIMVPIKASAGYASNVLD--TDWYQDLPAFNI 124 Query: 134 Q------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKVL 185 + + SMLP+ + + ++ + V +R+ + +V K L Sbjct: 125 PLPQYKEGSFRAFQVRGDSMLPVLQPAEWVMGKAVESVRQANDNRIHVVVTADTVVVKKL 184 Query: 186 ISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++L+SLN YPV +S+I+ + + Sbjct: 185 RKSEISDLVNLISLNRDYPVIEQPISEIKELWEV 218 >gi|291551274|emb|CBL27536.1| SOS regulatory protein LexA [Ruminococcus torques L2-14] Length = 191 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 37/213 (17%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I+ ++ +PS +A G+ + K + ++ Sbjct: 3 EIKKYIEDYYLQNRQSPSTTKIAEAVGIARGTAYKY----------------LVEMAEKN 46 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + ++ + + S + N V +P Sbjct: 47 MIEYDGQEIRTNVTRKYSGEQTQTPIV-------GSIPCGSPQYEKENIEEYVSLPTAIF 99 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + SM GD++++ ++ N GD ++ K Sbjct: 100 G-------KGDFFILRASGQSMIEAGIDDGDLVVVKKQVEANEGDIVVALVD-NQNTLKR 151 Query: 185 LISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + I L N V + Sbjct: 152 YFRDDENKKIILHPENKKMKDIIV--DECCIQG 182 >gi|332878745|ref|ZP_08446462.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683382|gb|EGJ56262.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 270 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 63/227 (27%), Gaps = 18/227 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-------WPSTESIF- 59 + E I + E NLT S ++ N + + + E + Sbjct: 2 NVKERIKQFIEAQNLTVSAFEKEINASNGYINSISKNIGIDKLNTILEKYPKLNVEWLIT 61 Query: 60 ---KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NK 114 ++L + + + ++ G N Sbjct: 62 GKGEMLKSGGALPLLPRVEIIKPIKVEGRSLVPKVIVVDDRDNDRIPLVPVRAQAGYLNG 121 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL 171 ++ E ++ + SM P + ++ + ++ Sbjct: 122 YDDERFIEQLPTYSLPTMQNGTYRMFQVSGLSMYPTLQDSSYVVGKFVEDWDMLSNNRVC 181 Query: 172 LIKPRTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++ ++ K ++ + ++ S N YP ++ + D++ I Sbjct: 182 VVVTANDGVIVKRVVNSISKYGTLYCKSDNRDYPHLSIHIEDVKEIW 228 >gi|172079600|ref|ZP_02709311.2| cI repressor [Streptococcus pneumoniae CDC1873-00] gi|172042354|gb|EDT50400.1| cI repressor [Streptococcus pneumoniae CDC1873-00] Length = 238 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 61/238 (25%), Gaps = 37/238 (15%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I R+ L P LA T+ N + R E + + + Sbjct: 3 DNIKRLLSAKGLNPRQLAIALDFKYTTVNDWVN--AKTYPRIDKIEMLANFFNVSKSDLV 60 Query: 71 QLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVG--- 119 + + + ++ L + + + + + Sbjct: 61 ENKNAETPTTSPIQSIYDQLTPPRQEKALTYLKKQLLEQKNENIVSENIISLDDYRESKT 120 Query: 120 VPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRKGDILILNSA 162 +P I I SM P + GD L + + Sbjct: 121 LPVIGVVTAGNGITQDDNLNIEKCFYTDEIPDDYDAIAYVVGNSMEPKIKNGDYLFIKNT 180 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 QV+ + + G K L + L SLN ++ DI I ++ Sbjct: 181 PQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPECADIQLDEDNDIRTIGEVV 232 >gi|167554278|ref|ZP_02348019.1| protein SamA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321486|gb|EDZ09325.1| protein SamA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 140 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 10/130 (7%) Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151 + FP+ + + + + SM + Sbjct: 11 PALSTAPLFTERCPAGFPSPAAD---YTEDELDLNAYCIRRPSATYFVRAIGDSMKDMGL 67 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD+++++ A + GD ++ + G+ K L + I L+ +N YP + Sbjct: 68 HSGDLMVVDKAEKPMQGDIVIAETD-GEFTVKRLQLKP--RIALLPMNPAYPTLY--PEE 122 Query: 212 IEWIARILWA 221 ++ ++ A Sbjct: 123 LQIFG-VVMA 131 >gi|270160321|ref|ZP_06188975.1| putative mutagenesis protein UmuD [Legionella longbeachae D-4968] gi|308051568|ref|YP_003915142.1| Peptidase S24 family protein [Legionella longbeachae NSW150] gi|269987170|gb|EEZ93427.1| putative mutagenesis protein UmuD [Legionella longbeachae D-4968] gi|288859993|emb|CBJ13985.1| Peptidase S24 family protein [Legionella longbeachae NSW150] Length = 168 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + + SM GD L+++ +I+ G ++ Sbjct: 58 ADDYIE--GYLDLNTKFIKHPSATFVLQAIGDSMVEAGIFSGDWLLVDRSIEATDGRIVI 115 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + + L+ N + + I ++ Sbjct: 116 AAIN-GELTVKRLSKK-QGRVSLLPANPKFKPIEINEECEMVIWGVI 160 >gi|169344592|ref|ZP_02865558.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169297202|gb|EDS79314.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 415 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/113 (11%), Positives = 35/113 (30%), Gaps = 10/113 (8%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 + + +TV +P N Y + SM ++ +++ Sbjct: 298 HYACEDLIDTVYLPNQFFKPNFEY------FGLRIFGDSMNKMFDNDFTIVVRKTNSFIN 351 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218 GD ++ + K + + I L+ N + + + + + + Sbjct: 352 GDIVIAII-GDEATCKEI-KQVENYIYLIPHSTNPDHQIQKYQADQVIILGVV 402 Score = 42.1 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 9/178 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + +++ LT +A+K G+ ++ + + IE S+ K++ + + + Sbjct: 11 ENLKSFRKQNKLTQEEMAKKLGIARSTLSYYEHGSIEPNI--FVLISLSKLMNCSLDNLI 68 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L K E S D N + ++ Sbjct: 69 GLNKEKIIPMPFENNKYPETKTTETNEEESEKTNDDLSDENINATENNLIEDLLKNLKKS 128 Query: 131 YAIQTQDTRHKTQDTSMLPLYR----KGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 K++ M +R + D + D++ + +I K Sbjct: 129 KKNCDDLESSKSRADKMYEEFRMSKSRADKMFTEFQKSKQRTDKMYEEF---EISKKR 183 >gi|254362413|ref|ZP_04978522.1| possible bacteriophage transcriptional regulator [Mannheimia haemolytica PHL213] gi|153094002|gb|EDN74918.1| possible bacteriophage transcriptional regulator [Mannheimia haemolytica PHL213] Length = 225 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 11/192 (5%) Query: 35 PTSFNKSKRFGIEGRNRWPSTE---SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 + N + IEG+ R + E S I Q + E+ Sbjct: 31 RATKNNWLKRQIEGK-RGVAFEYHYSSLPISVQQELGFAQTAVKEEPRTLVAAQTADEME 89 Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 + F + F + + +G+ + G Y + SM P Sbjct: 90 RVPFYNVQASAGFGAFNSEVYAPDDYIGLSKRWLDVRGFYL--SYLAFITASGDSMYPTI 147 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS 210 GD+L++N A ++ + + + K + G I L+S N Y V Sbjct: 148 SDGDMLLVNRATTQPKDGKIYVFRQGEQLWVKRVQGIMGG-IRLISDNKELYSPIDVIFD 206 Query: 211 ---DIEWIARIL 219 D E I +++ Sbjct: 207 ETLDFEVIGQVV 218 >gi|158320706|ref|YP_001513213.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140905|gb|ABW19217.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 15/224 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-----------WPSTE 56 ++ E I + LT LA+K GL + + + Sbjct: 3 RVAEKIKEARMKAKLTEKELAKKCGLTANYIIQIESGKRVVNEKLAESILNVLGEKLDFM 62 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 S+ + + + + + + + K + F T Sbjct: 63 SMADVAEKEVQATPEKKNKAETIKKEDFYEIKPTEQWADALANIIKKFPIYDVKTNKVVG 122 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 +P I G Y + + +K D++++ ++ + Sbjct: 123 NKELPIIGKKVEG-YNWDKLLFVQASDNDMESLRIKKEDVIMVYLTSEIQNNSI-YLFEI 180 Query: 177 TGDIVAKVLISRRGRSIDLMSL-NCCYPVDTVEMSDIEWIARIL 219 + + L + +SL N E++ I+ I + + Sbjct: 181 ENKKMIRQLRKESNNKVV-ISLGNKNNEPMVTELNKIKIIGKCV 223 >gi|33861493|ref|NP_893054.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634070|emb|CAE19395.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 128 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E + + + + + SM+ + D++I++ ++ G+ ++ G+ Sbjct: 23 EENIDLNEHLISNPFSTFFLRVKGDSMINSGIKDKDLIIVDKSLTAKPGNIIIAMID-GE 81 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 K L + + L + N YP + DI+ ++ Sbjct: 82 FTIKRLSIK-NNELYLKAENHKYPDFSFRNHIDIQIWGVVI 121 >gi|333007509|gb|EGK26987.1| protein umuD [Shigella flexneri K-272] gi|333019891|gb|EGK39163.1| protein umuD [Shigella flexneri K-227] Length = 139 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132 >gi|206602046|gb|EDZ38528.1| LexA repressor [Leptospirillum sp. Group II '5-way CG'] Length = 222 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 62/209 (29%), Gaps = 25/209 (11%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++++E I + L P S +A+ G+ P +S L Sbjct: 11 QREVFEFILKWMRETRLPPTLSEVAQFLGV-------------------PYPKSAATHLD 51 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + + G + + + G G + VP+ Sbjct: 52 ALEKKGYIQRSPGKARGILLTPLGESYQMDRLIENILEIPI-VGRIRAGRLTGSEIVPDG 110 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + D + + SM GD+ + + GD ++ G++ Sbjct: 111 TLAVPLSLFTEKPDFALQIRGDSMNGAGILDGDMAFIRKTREARNGDLIV-AHIQGEMTL 169 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K LI + + I L + N Y V D Sbjct: 170 KQLIVEKRQMI-LRAANPLYADIRVSPDD 197 >gi|331013546|gb|EGH93602.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 144 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165 P G V E + + ++ K SM+ D+++++ + Sbjct: 22 QVPAGFASPPVDYIEKHVSLDELAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRTA 81 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G+ ++ + + K L + L S N YP + D I ++ S Sbjct: 82 EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENSAYPSKHILEGDNLVIWGVVNYS 137 >gi|329730929|gb|EGG67305.1| repressor LexA [Staphylococcus aureus subsp. aureus 21189] Length = 190 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 29/196 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54 M + +I+ I ++ + PS + GL ++ + R +G R Sbjct: 1 MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 T+ + + ++ +++ + K + N Sbjct: 61 TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173 +PE + + + SM GD +I+ S GD ++ Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158 Query: 174 KPRTGDIVAKVLISRR 189 + K + Sbjct: 159 MTEEDEATVKRFYKEK 174 >gi|323138020|ref|ZP_08073094.1| putative phage repressor [Methylocystis sp. ATCC 49242] gi|322396739|gb|EFX99266.1| putative phage repressor [Methylocystis sp. ATCC 49242] Length = 241 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 65/218 (29%), Gaps = 28/218 (12%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----ESIFKILAATNETICQLLDLPFS 78 + + AR G+ + +++ E + P E + ++ + Sbjct: 29 SVANAARILGVPDNTLRRARAGENE--PQAPLLLALSEKLGVSMSYLLGVDDDPTPQIAT 86 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 G + + + + + G + P + + A + + Sbjct: 87 HGEKRAPETQFAVVPHLDVRAAAGPGSVNHIVA--VKERLAFPAWML--HKLGAAKAKLA 142 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQV------------NCGDRLLIKPRTGDIVAKVLI 186 + SMLP G +L++N + + D + + K L Sbjct: 143 FMRASGDSMLPTIADGALLLVNESETDLPPRPPPRKSDWDHPDIYVF---GDEPRVKRLR 199 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILWA 221 I ++S N Y + + +++ R++W Sbjct: 200 RNGKGEIVVISDNLAYDPEILRGPELKRCIIHGRVIWW 237 >gi|213157772|ref|YP_002320570.1| putative transcriptional regulator, Cro/CI family [Acinetobacter baumannii AB0057] gi|301347660|ref|ZP_07228401.1| putative transcriptional regulator, Cro/CI family protein [Acinetobacter baumannii AB056] gi|301596874|ref|ZP_07241882.1| putative transcriptional regulator, Cro/CI family protein [Acinetobacter baumannii AB059] gi|213056932|gb|ACJ41834.1| putative transcriptional regulator, Cro/CI family [Acinetobacter baumannii AB0057] Length = 260 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 63/246 (25%), Gaps = 37/246 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M++ +++ AI + LAR AG+ + + ++ Sbjct: 1 MSTL-QERMSLAIKHYESVTGKRFKNTELARFAGVSRANVGLWVNGPTQ----ELEGSNL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K + L T + + + T Sbjct: 56 VKAAEFLGVSKDWLAGQGNKMIATQLDGGGAQLNVLDIEAFKQKYNIPDSEDAVKFVQTS 115 Query: 119 GVPEIR-----------------------------SPHNGIYAIQTQDTRHKTQDTSMLP 149 P + ++ + K SM P Sbjct: 116 DKPFPIQKRYVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPTHSAGPRAYGIKGTGDSMFP 175 Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 R G ++ + ++ + + + + G K + G + L+S+N EM Sbjct: 176 AIRNGWYVVCDPDAELVPNEFVQVCLKDGRCTIKEFVGINGGVLSLLSVNGG-ERFFFEM 234 Query: 210 SDIEWI 215 ++E I Sbjct: 235 DEVESI 240 >gi|116667752|pdb|2HO0|A Chain A, Structure Of A Hyper-Cleavable Monomeric Fragment Of Phage Lambda Repressor Containing The Cleavage Site Region Length = 133 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSMLP------LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM + G +++++ V GD + + + K LI Sbjct: 42 DSAFWLEVEGNSMTTPTGSKTSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 101 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 102 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 133 >gi|30995398|ref|NP_438908.2| LexA repressor [Haemophilus influenzae Rd KW20] gi|1170779|sp|P44858|LEXA_HAEIN RecName: Full=LexA repressor Length = 207 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + + R E + P + ++R+ G E + S + Sbjct: 1 MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +I+ L G G G Sbjct: 54 GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVRAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K SM + GD+L ++S V G ++ + Sbjct: 94 AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G I L + N + V + + Sbjct: 154 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 187 >gi|258541604|ref|YP_003187037.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632682|dbj|BAH98657.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256635739|dbj|BAI01708.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256638794|dbj|BAI04756.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256641848|dbj|BAI07803.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256644903|dbj|BAI10851.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256647958|dbj|BAI13899.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256651011|dbj|BAI16945.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654002|dbj|BAI19929.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] Length = 283 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 78/288 (27%), Gaps = 79/288 (27%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP---STESIFK 60 + + + ++R L+ LARKAG+ T R ++G++R P E I Sbjct: 1 MTRSPVADELERRMAHLGLSQKALARKAGVGDTYV----RDILKGKSRNPGGEKLECIAA 56 Query: 61 ILAA-------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF---------- 103 +L Q + GF Sbjct: 57 VLGCTARDLLFPGVDHAQPGLMLRERRTPYLPPPFTPQESPRDTLRVHGFSSRERPENAP 116 Query: 104 -------------------FDSGVFPTGNKWNTVGVPEIRSPHNGIY------------- 131 P + V RS +G Y Sbjct: 117 QLALDMAQIKRARSTTQPRPAMPAVPAPPGYVMVPYLAQRSITSGRYDEAQLLGSPKYFE 176 Query: 132 ---------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---------VNCGDRLLI 173 A + +M PL R GD++++++ + G+ ++ Sbjct: 177 ESLITQRLNARAEDLRALNVEGQAMEPLLRDGDLVLMDTQRTTLAEPGLFVLFDGESVVC 236 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + + ++ + + N + T+ S ++ + R++W Sbjct: 237 RWAE-----RTFDAQTRPVVQISCENKRFSACTLPASRVQILGRVVWY 279 >gi|332879292|ref|ZP_08446989.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682712|gb|EGJ55612.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 254 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 76/246 (30%), Gaps = 38/246 (15%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ +A+ + + LT +G+A GL P++F++ ++ T++I + Sbjct: 7 NERFIKAVSTLFKDKGLTKAGIAESLGLKPSTFSEILNNRMKA-----GTDTIAALCDKY 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF----------------FDSGVF 109 + + +L + E K + P + S Sbjct: 62 SFSPFWILMGQGTMLIPGELKGRSKPSMALAYSPDRISELLESQKTSPYPKREKAHRVPD 121 Query: 110 PTGNKWNTVGV----------PEIRSPHNGIYAIQ---TQDTRHKTQDTSMLPLYRKGDI 156 + + + + Y I D + + SM P Y GD+ Sbjct: 122 NSNEGIPLIPLSAMAGAFTGDTSVMEYECERYVIPAFKGADFLIQVKGDSMQPTYYSGDL 181 Query: 157 LILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI 212 + ++ + + K ++ + ++S N YP + S Sbjct: 182 VACQRVPLDDLFFQWNKTYVLDTKQGPLIKRIMPGSDSSHVLIVSDNDSYPPFELSKSQF 241 Query: 213 EWIARI 218 +A + Sbjct: 242 HGVALV 247 >gi|241762947|ref|ZP_04761009.1| putative phage repressor [Acidovorax delafieldii 2AN] gi|241367899|gb|EER62118.1| putative phage repressor [Acidovorax delafieldii 2AN] Length = 191 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 56/194 (28%), Gaps = 33/194 (17%) Query: 31 AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90 AG+ + +R+ P ES ++ A + +++ + I Sbjct: 13 AGITHRASQSVRRWFDAPEPGLPDLESFARLCAGLGCSADEIIGALRPQAEDQAHCTQLI 72 Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + + + G T + M P Sbjct: 73 QVANCIQAIADSLAHRGQLGTP---------------------------VQVPGDEMAPH 105 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT---- 206 + GD++ ++S + G+ + G ++ + + R RSI L N Y Sbjct: 106 LKAGDLVFVDSTVTELAGNGIYAFTCNGSLLIRRVERRIDRSIVLKCDNKAYQDYEWTSA 165 Query: 207 --VEMSDIEWIARI 218 ++ + ++ Sbjct: 166 TAAARRRVKILGKV 179 >gi|241765291|ref|ZP_04763270.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN] gi|241365010|gb|EER59915.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN] Length = 144 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SM GD+L+++ A++ G ++ G+ K L + Sbjct: 51 PQATFLLRVAGDSMRDAGIDDGDLLVVDRALKPRHGCVVVAVVD-GEFTVKRLHQQF-GR 108 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 I L + N +P + I ++ AS Sbjct: 109 IRLRAANPTFPDILPKEGQTIEIWGVVTAS 138 >gi|145633896|ref|ZP_01789617.1| probable transcription regulator [Haemophilus influenzae 3655] gi|144985268|gb|EDJ92111.1| probable transcription regulator [Haemophilus influenzae 3655] Length = 222 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 63/210 (30%), Gaps = 14/210 (6%) Query: 22 LTPSGLARKAGL--DPTSFNK------SKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + + L GL P NK + +G + + E + L + Sbjct: 8 FSANELKDLEGLPNSPQGINKRARTQNWIKREKDGV-QGGAVEYHYSSLPLDVQRQLGFE 66 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + E L+ S G F G P + + Sbjct: 67 QGQEVQKAPISETLNENVLMIDSFSSINVSAGFGSFNEGVTKPDEQTPYSAALLRKLGVN 126 Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 SM P GD ++++ + GD++ + + K + R + Sbjct: 127 PKYAAVFWADGISMRPTIDDGDQMLVDLKRKEIKGDKIYLVQNGSSVWVKRVKIRWDG-V 185 Query: 194 DLMSLN-CCYPVDTVEMSD---IEWIARIL 219 +L+S N YP + + ++ I +++ Sbjct: 186 ELISDNREEYPPIILSKDEAENLQVIGQLV 215 >gi|1573757|gb|AAC22408.1| lexA repressor (lexA) [Haemophilus influenzae Rd KW20] Length = 209 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + + R E + P + ++R+ G E + S + Sbjct: 3 MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +I+ L G G G Sbjct: 56 GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVRAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D K SM + GD+L ++S V G ++ + Sbjct: 96 AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G I L + N + V + + Sbjct: 156 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 189 >gi|146344048|ref|YP_001201904.1| putative UV resistance protein [Pseudomonas fluorescens SBW25] gi|146187860|emb|CAM96189.1| putative UV resistance protein [Pseudomonas fluorescens SBW25] Length = 143 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 5/107 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + P + A + + SMLP G LI++ A GD ++ Sbjct: 35 DHYEPPISLDELVDLRA--PHVWLGEAEGVSMLPCGIVSGSRLIIDRARTPKIGDVVV-A 91 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 V K L + S L S N YP +IE + W+ Sbjct: 92 YICNQPVVKRLDKSQNGSWVLSSDNPEYPPIE-GSEEIEVFGVVTWS 137 >gi|78184864|ref|YP_377299.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CC9902] gi|78169158|gb|ABB26255.1| UmuD protein. Serine peptidase. MEROPS family S24 [Synechococcus sp. CC9902] Length = 147 Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 9/133 (6%) Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 ++ L+ S P G + V + + + K Sbjct: 8 QRIPRPLHASRPQQILPLVSERVPAGFPSPADDYVEM--GIDLNEQLIRHPGSTFFLKVS 65 Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM GD+L+++ ++ G ++ G K L + L + + Y Sbjct: 66 GESMTEAGIHDGDLLVVDRSLDPRPGRVVVAVLD-GAFTLKRLARHH-GRLRLEAAHPDY 123 Query: 203 PVDTVEM-SDIEW 214 P ++ SD++ Sbjct: 124 PPLELQHCSDVQI 136 >gi|326565429|gb|EGE15604.1| peptidase S24-like protein [Moraxella catarrhalis 103P14B1] gi|326573368|gb|EGE23336.1| peptidase S24-like protein [Moraxella catarrhalis 101P30B1] Length = 216 Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 61/212 (28%), Gaps = 15/212 (7%) Query: 24 PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83 PS A KA P + + + RN + + T + +D Sbjct: 2 PSERA-KADQFPKMIRRYSKGQAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKLAP 60 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSP-----HNGIYAIQTQ 136 + L + F+ F G+ + V + + + + Sbjct: 61 ITEWDNGAPLDDDEA-EIPFYKDIAFACGHGAVNDEVTHETRKLRMGKRTLSNLGVMSEN 119 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 +D SM P + GD + ++ + R+ + K L + ++ Sbjct: 120 AFAVTARDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIV 179 Query: 197 SLNCC-YPVDT-----VEMSDIEWIARILWAS 222 S N +P + + E I + S Sbjct: 180 SDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 211 >gi|331682667|ref|ZP_08383286.1| protein UmuD [Escherichia coli H299] gi|331080298|gb|EGI51477.1| protein UmuD [Escherichia coli H299] Length = 139 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y + D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPIIISSEDTLDVFGVVI 132 >gi|172051552|emb|CAQ34947.1| RumA [Photobacterium damselae subsp. piscicida] Length = 149 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + SM+ DIL+++ ++Q GD ++ Sbjct: 39 DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G++ K L R + L+ N Y + +++E + Sbjct: 96 GIHGELTVKELQLRP--CVMLIPRNQVYEPIHIPEGTELEIFGVV 138 >gi|116070738|ref|ZP_01468007.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. BL107] gi|116066143|gb|EAU71900.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. BL107] Length = 147 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 9/133 (6%) Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 ++ L+ + S P G + V + + + K Sbjct: 8 QRIPRPLHASRTQQILPLVSERVPAGFPSPADDYVEM--GIDLNEQLIRHPGSTFFLKVS 65 Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM GD+L+++ ++ G ++ G K L + L + + Y Sbjct: 66 GESMTEAGIHDGDLLVVDRSLDPRPGRVVVAVLD-GAFTLKRLARHH-GRLRLEAAHPDY 123 Query: 203 PVDTVEM-SDIEW 214 P ++ SD++ Sbjct: 124 PPLELQHCSDVQI 136 >gi|311064132|ref|YP_003970857.1| UmuD protein [Bifidobacterium bifidum PRL2010] gi|310866451|gb|ADP35820.1| UmuD protein [Bifidobacterium bifidum PRL2010] Length = 141 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 4/130 (3%) Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 +++ P + + G + E S + SM Sbjct: 1 MVHARPDHRPVPIVTEMVAAGFPSPALDGREEGFSLDAHVIEHPEYTFIVTVAGDSMEGA 60 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD L+++ ++ GD ++ G++ K L+SR L + N YP Sbjct: 61 GIFHGDWLVVDRSLTPEDGDVVVAVLD-GELTVKRLLSR-DGRPMLHAENPRYPDFVPSE 118 Query: 210 SDIEWIARIL 219 I ++ Sbjct: 119 HGDVVIWGVV 128 >gi|317047819|ref|YP_004115467.1| peptidase S24/S26A/S26B, conserved region [Pantoea sp. At-9b] gi|316949436|gb|ADU68911.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. At-9b] Length = 146 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + + + + + SM +GD+L+++SA+ GD ++ Sbjct: 39 DYIE--RKLDLNEHLVPHPSATYFVRVEGDSMRDANISEGDLLVVDSALDAKHGDIVVAA 96 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+ K L + L+++N Y T E ++E + Sbjct: 97 IN-GEFTVKRLQQFP--RVQLLAMNPRYAPITPGEEEELEIFGVV 138 >gi|157413289|ref|YP_001484155.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9215] gi|157387864|gb|ABV50569.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9215] Length = 137 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 4/103 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 E + + + + + SM+ + D++I++ ++ G+ ++ Sbjct: 31 YTEENIDLNEHLISNPFSTFFLRVKGDSMINAGIKDKDLIIVDKSLIAKPGNIIIAMID- 89 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G+ K L + + L + N YP + D++ ++ Sbjct: 90 GEFTIKRLSIKNDE-LYLKAENNNYPDFRFKNHIDVQIWGVVI 131 >gi|330989676|gb|EGH87779.1| peptidase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 130 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 7/125 (5%) Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGD 155 + G+ + Y + + SM P +G Sbjct: 1 MYRYPVLSWVAAGDWSEAIEPGGSEEYELTDYKAKGPAFWLTVKGDSMTAPTAPSVPEGS 60 Query: 156 ILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 +++++ V G ++ + + K L+ G L LN YP D Sbjct: 61 QILVDTRADVRPGKLVIAKLADSNEATFKKLVEDGGVRY-LKPLNSAYPTVQC-ADDCRI 118 Query: 215 IARIL 219 I ++ Sbjct: 119 IGVVV 123 >gi|220904141|ref|YP_002479453.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868440|gb|ACL48775.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 242 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 23/231 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I+E I T LA + +S + +KR + K+ Sbjct: 18 EIYERIKLATNSR--TQVELAEVLDIRQSSISDAKRRNSVP------GDWFMKLFEKFGL 69 Query: 68 TICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L ++ + + G S + + Sbjct: 70 NPDWLKQGIGPMYLRTEQGYMPQDAPAALAENAAHYGDTLARGSVVSVYHMNCDYDDEQP 129 Query: 120 VPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKP 175 P + ++ + + T+M P L +++ V G + Sbjct: 130 RPSLEVAGKISLPHSYMKDSLAVLRMRGTNMTPTIMSDAHLGVDTMDRDVISGRVYALFA 189 Query: 176 RTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 ++ + L L S + +P T+ + + R++W Q Sbjct: 190 PNEGVILRRLFLNSAQDGYVLRSDSANFPETTLTPDLLTRRLLGRVVWVFQ 240 >gi|260912753|ref|ZP_05919239.1| LexA repressor [Pasteurella dagmatis ATCC 43325] gi|260633131|gb|EEX51296.1| LexA repressor [Pasteurella dagmatis ATCC 43325] Length = 212 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 8/127 (6%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 S G G G E + D K SM + G Sbjct: 78 VNDDSQGLPLVGRVAAGEPILAEQHIEGTYKVDANMFKPQADFLLKVYGQSMKDIGILDG 137 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---- 210 D+L ++S V G ++ + ++ K L + G I L + N + V+++ Sbjct: 138 DLLAVHSTKDVRNGQVVVARI-EDEVTVKRLERK-GSVIYLHAENEEFAPIVVDLNTQPN 195 Query: 211 -DIEWIA 216 +IE IA Sbjct: 196 FEIEGIA 202 >gi|220923732|ref|YP_002499034.1| putative phage repressor [Methylobacterium nodulans ORS 2060] gi|219948339|gb|ACL58731.1| putative phage repressor [Methylobacterium nodulans ORS 2060] Length = 246 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 63/220 (28%), Gaps = 31/220 (14%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 +R ++ AGL T + + G E++ ++ + + + Sbjct: 36 IKRQGRDLKEVSLSAGLGETYVRDALKRGRG------KLENLIRVASVLGKPPEWITTSS 89 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----------GNKWNTVGVPEIRS 125 + T E + G + G +V P Sbjct: 90 KTKPGTRGAVIPEANASAPVAAPRYGGLMPVLGVAKGGSDGRLIFNGQVIESVPRPAALE 149 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK------PRTGD 179 G YA SM P ++ G+ + ++ GD ++++ + Sbjct: 150 NVEGAYA-------VYVSGDSMHPRFKAGEQVWVHPHRPPKRGDDVVVQLYAEDEGDPPE 202 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K ++ + L N ++ + ++ + ++ Sbjct: 203 GYIKEFVAWTPSMLILYQHNPA-GEFEIDRALVKSVHTVI 241 >gi|328949098|ref|YP_004366435.1| SOS-response transcriptional repressor, LexA [Treponema succinifaciens DSM 2489] gi|328449422|gb|AEB15138.1| SOS-response transcriptional repressor, LexA [Treponema succinifaciens DSM 2489] Length = 204 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 60/221 (27%), Gaps = 31/221 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + K++ E I R E + P+ + G+ + + Sbjct: 1 MKNLTDRQKEVLEFIARFTEENGYPPTVREIGENFGISLRAVQDHIAACQKKG------- 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + R T+ +IPLL +G + + + + Sbjct: 54 ---YLSQCQKRSRSIRVLKDDGLVRETKPFLAKIPLLGTVAAGKPLLCEENL----DGYV 106 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + P +R + SM GD+ I+ A G ++ Sbjct: 107 NIAEPFVRPG--------KSYFALHVRGASMANAGILDGDLAIIEQAEIATEGQIVVAVV 158 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 I K I L N + D++ Sbjct: 159 N-NAITLKRFYREE-ERIRLQPENPDFQPIY--TRDVQIAG 195 >gi|311279424|ref|YP_003941655.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae SCF1] gi|308748619|gb|ADO48371.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae SCF1] Length = 143 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + + K SM GD+L+++SA+ G+ ++ Sbjct: 36 DYVE--KRIDLNELLVSHPSATYFVKASGDSMVEAGIGDGDLLVVDSALTAEHGNIVIAA 93 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218 G+ K L R ++ L+ +N Y +E + + Sbjct: 94 VD-GEFTVKRLQLRP--TVQLIPMNSAYKPIVIESEGQLSIFGVV 135 >gi|184157332|ref|YP_001845671.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii ACICU] gi|260555987|ref|ZP_05828207.1| cro/CI family transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|183208926|gb|ACC56324.1| putative transcriptional regulator, Cro/CI family [Acinetobacter baumannii ACICU] gi|260410898|gb|EEX04196.1| cro/CI family transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|322507218|gb|ADX02672.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323517194|gb|ADX91575.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] Length = 250 Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 66/241 (27%), Gaps = 53/241 (21%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + E L + LAR P + K P+ E++ I + Sbjct: 6 RIRQKLEEKKLRAADLARATKKSPVAAKKWLDGTSV-----PTAENLKVIAKFLGVSDDW 60 Query: 72 LLDLPFSDGR-------------------------------------TTEKKEKEIPLLY 94 LL + +++ +P+ Sbjct: 61 LLYGGSDEQESSNNLAQLNVIDIEAFKQKYNIPDSEDAVKFVQAPAKPFPIQKRYVPVKA 120 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 + G G+F + V + + K SM P R G Sbjct: 121 YSKMGMDGYFTDMGYDGNAGDGYVPT----------HTAGPRAYGIKGTGDSMFPAIRNG 170 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 ++ + + + + + + G K + G + L+S+N EM ++E Sbjct: 171 WYVVCDPDADLVPNEFVQVCLKDGRCTIKEFVGINGGVLSLLSVNGG-ERFFFEMDEVES 229 Query: 215 I 215 I Sbjct: 230 I 230 >gi|83643488|ref|YP_431923.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase) [Hahella chejuensis KCTC 2396] gi|83631531|gb|ABC27498.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase) [Hahella chejuensis KCTC 2396] Length = 195 Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 53/192 (27%), Gaps = 16/192 (8%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + + ++ ++ R + + + + + + + Sbjct: 4 VSHVTISQWEKGETSPRGENLHL-LCSALSCQPDWLLYGKAERAGDEKIAGYQPYASLGK 62 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML---- 148 + + NT + + + K SM Sbjct: 63 VPLITPQQARVWKEIA-------NTFHHKDAIAWRGISVVVGPHAFAMKAVGDSMANPHG 115 Query: 149 -PLYRKGDILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 P +G I++++ I G +++ + + + K L+ LMSLN Y Sbjct: 116 TPSIPEGAIVVVDPDITPVSGMVVVVGLKGSKEAIIKKLVVDGPNQY-LMSLNPDYKPIE 174 Query: 207 VEMSDIEWIARI 218 + + I + Sbjct: 175 LT-EESAVIGVV 185 >gi|187925688|ref|YP_001897330.1| LexA repressor [Burkholderia phytofirmans PsJN] gi|187716882|gb|ACD18106.1| LexA repressor [Burkholderia phytofirmans PsJN] Length = 199 Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 3/102 (2%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 PE+ + + + + + + SM + GD++++ GD ++ Sbjct: 92 EPPELLTIDDYLVDDPNRTVLCRVRGESMRDVGLLDGDLVVVEKNRPTRPGDIVVAVVD- 150 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + + L N + V +E + ++ Sbjct: 151 GEMTVKTLRLDKNGAYYLEPANQDFQVIR-PQGSLEIVGVVV 191 >gi|312115168|ref|YP_004012764.1| peptidase S24/S26A/S26B, conserved region [Rhodomicrobium vannielii ATCC 17100] gi|311220297|gb|ADP71665.1| Peptidase S24/S26A/S26B, conserved region [Rhodomicrobium vannielii ATCC 17100] Length = 129 Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 3/102 (2%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + SM + GDIL+++ AI ++ Sbjct: 21 YLEGELDLNKFLIRNPAATFYVRLSGDSMVMAGLFDGDILVVDRAISARHRHIVVAVVD- 79 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L G I+L S N Y + I ++ Sbjct: 80 GELTVKRL-WSSGGVIELRSENPAYQPIKMVEGRELVIWGVV 120 >gi|222148448|ref|YP_002549405.1| Phage repressor protein [Agrobacterium vitis S4] gi|221735436|gb|ACM36399.1| Phage repressor protein [Agrobacterium vitis S4] Length = 204 Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 52/209 (24%), Gaps = 28/209 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I I + L+ + + KAG+ + +R GR+ S ++ K Sbjct: 1 MLM----DILNRIQERLDTVGLSANAASVKAGISKDAIRNIQRACKSGRD-GISITTLIK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--NTV 118 + T L + G +TV Sbjct: 56 LAPVLQTTPSW-------------------LLEGSSNANQFRVPKISWVSAGAFDTADTV 96 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + Q SM + G ++ +N A + + I Sbjct: 97 HSFDEFPTIETSGLPDGDWVALEVQGDSMDRISPPGSVIFVNRADRKLSHNACYIIQDVD 156 Query: 179 D-IVAKVLISRRGRSIDLMSLNCCYPVDT 206 K + + +S N + Sbjct: 157 GSATYKRY-RQSPMRFEPVSTNPEHETIY 184 >gi|148988905|ref|ZP_01820320.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] gi|147925716|gb|EDK76792.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] Length = 245 Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 68/245 (27%), Gaps = 43/245 (17%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E I + + T S LA K + +K ++ I+ + ++IFK+ Sbjct: 6 QHVGEKIKFFRKENGWTQSVLAEKMSTSKQTISKYEKGIIK-----VNQDTIFKLADIFG 60 Query: 67 ETICQLLD--------------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 +I + ++K + + Sbjct: 61 VSIDSFFPSIIEEIATTSPIQSIYDQLTPPRQEKALTYLKKQLLEQKNENIVSENIISLD 120 Query: 113 NKWNTVGVPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRKGD 155 + + +P I I SM P + GD Sbjct: 121 DYRESKTLPVIGVVTAGNGITQDDNLNMEKCFYTDEIPDDYDAIAYVVGNSMEPKIKNGD 180 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEW 214 L + + QV+ + + G K L + L SLN ++ DI Sbjct: 181 YLFIKNTPQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPECADIQLDEDNDIRT 234 Query: 215 IARIL 219 I ++ Sbjct: 235 IGEVV 239 >gi|95020387|gb|ABF50720.1| UV repair protein [Vibrio cholerae] Length = 131 Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 7/101 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + SM+ DIL+++ ++Q GD ++ Sbjct: 21 DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 77 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G++ K L R + L+ N Y + +++E Sbjct: 78 GIHGELTVKELQLRP--CVKLIPRNQAYEPIHIPEGAELEI 116 >gi|270704214|ref|ZP_06223078.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] gi|270315814|gb|EFA27929.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] Length = 106 Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 1/89 (1%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 SM + G + ++ + ++ G + K+L + + Sbjct: 15 ENAVCVIADGNSMEXVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVK 74 Query: 195 LMSLN-CCYPVDTVEMSDIEWIARILWAS 222 + S N +P + E+ DI + ++ W S Sbjct: 75 IRSYNTEEHPDEIAELQDISVLGKVFWYS 103 >gi|152978553|ref|YP_001344182.1| LexA repressor [Actinobacillus succinogenes 130Z] gi|171704242|sp|A6VMQ0|LEXA_ACTSZ RecName: Full=LexA repressor gi|150840276|gb|ABR74247.1| SOS-response transcriptional repressor, LexA [Actinobacillus succinogenes 130Z] Length = 210 Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 59/209 (28%), Gaps = 32/209 (15%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++++ + E + P + ++R+ G + ++ R + E + Sbjct: 11 QQEVYNFLKHYIETTGMPPTRAEISRELGFRSP---NAAEEHLKALARKGAVEILA---- 63 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 LL G G G E Sbjct: 64 --------------------GTSRGIRLLLDAANDEPEGLPLIGQVAAGEPILAEQHIEG 103 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + D K SM + GD+L ++S V G ++ + ++ Sbjct: 104 TYRVDPDMFKPQADFLLKVNGQSMKNIGILDGDLLAVHSTKDVRNGQVIVARI-EDEVTV 162 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L + G I L + N + V + + Sbjct: 163 KRLERK-GDVIYLHAENEEFAPIVVNLRE 190 >gi|224371146|ref|YP_002605310.1| UmuD2 [Desulfobacterium autotrophicum HRM2] gi|223693863|gb|ACN17146.1| UmuD2 [Desulfobacterium autotrophicum HRM2] Length = 139 Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 6/125 (4%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 FP+ + + + + + SM+ G Sbjct: 13 ISCPICISSVEAGFPSPA-EDYME--GSLDLNRHLIKHPAATFFVRVSGDSMINAGIHPG 69 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 DILI++ +++ ++ G++ K L R I L N Y ++ Sbjct: 70 DILIVDRSLEATDKKIVIAVID-GELTVKRLRYRNA-LISLEPDNEDYQPISITQEKSLE 127 Query: 215 IARIL 219 I ++ Sbjct: 128 IWGVV 132 >gi|307310240|ref|ZP_07589889.1| putative phage repressor [Sinorhizobium meliloti BL225C] gi|306899792|gb|EFN30417.1| putative phage repressor [Sinorhizobium meliloti BL225C] Length = 209 Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 34/212 (16%) Query: 30 KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE 89 KAGL + K R++ P+ +++ + + LL S + ++E Sbjct: 2 KAGLSKDTLRKLL----ANRDQLPTGKTLSALAPTLEVSEQWLLTGQDSGPSQPVQPQQE 57 Query: 90 IPLLYFPPSGSGGFFDSGVFP--------------TGNKWNTVGVPEIRSPHNGIYAIQT 135 + + + T + + V P IY+ Sbjct: 58 VRVANIELPTNSAMPKDVPVLGTAAGSHHRGAFQLTSDAIDYVRRPPALMGTKDIYS--- 114 Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG--------DIVAKVLIS 187 + +SM P Y +GD++ ++ GD ++++ R G + + + Sbjct: 115 ----LYVEGSSMEPQYWQGDLVYVHPHKPARSGDAVVVQCRIGDEEPDGTVEATIGLYVR 170 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 R G ++ + N ++ I ++L Sbjct: 171 RTGEALIIRKHNP-PAEIEIKNEAIISYHKVL 201 >gi|116672382|ref|YP_833315.1| SOS mutagenesis protein UmuD [Arthrobacter sp. FB24] gi|116612491|gb|ABK05215.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Arthrobacter sp. FB24] Length = 143 Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 9/104 (8%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + T + SM GD LI+N A+ G ++ Sbjct: 37 YFDGRIDLNEHLIKDITSTYIVRVSGDSMEGAGISDGDELIVNRALDPKDGSVVIAVLD- 95 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220 G++ K L + L + N YP V SD+ ++W Sbjct: 96 GELTIKRL-RVTASGVVLQADNPRYPDIRVPALSDL-----VIW 133 >gi|330837533|ref|YP_004412174.1| SOS-response transcriptional repressor, LexA [Spirochaeta coccoides DSM 17374] gi|329749436|gb|AEC02792.1| SOS-response transcriptional repressor, LexA [Spirochaeta coccoides DSM 17374] Length = 209 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 49/211 (23%), Gaps = 28/211 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + K+I I + +PS R + P Sbjct: 1 MKELTARQKEIASYISSFITENGYSPS----------------VRDVASHFHFSPKAAHD 44 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I + ++ + P + N +TV Sbjct: 45 HLCALERKGVIRRNEAGLSRTMEVISEQYAPFQEMINVPVLGNIAAGKPIMSEENMEDTV 104 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 +P K + SM+ GD+ I+ A GD ++ Sbjct: 105 PIPASMLKRT-----PDPYYALKVRGESMVGAGIFDGDLAIIRHATTARNGDIVVASVGE 159 Query: 178 GD---IVAKVLISRRGRSIDLMSLNCCYPVD 205 + I K I+L + N Sbjct: 160 MESNAITLKRFYRD-AHMIELRAENPEIGPI 189 >gi|99081523|ref|YP_613677.1| hypothetical protein TM1040_1682 [Ruegeria sp. TM1040] gi|99037803|gb|ABF64415.1| hypothetical protein TM1040_1682 [Ruegeria sp. TM1040] Length = 216 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 25/218 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKILAATN 66 +I I E L+ LA ++G+ +R G + + SI K+ + Sbjct: 5 EILARITERREELKLSEQALALQSGMSKDGIRNWRRRFEAGDDNAGANVSSISKVASTLG 64 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + LL T ++ P G V P P Sbjct: 65 VSELWLLHGIGESKTPTISIAGKVGAGSQVPVFDAYEKGDGP--------QVECPPGIGP 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-----IV 181 H + + SM P+Y GD+L + + D ++ + Sbjct: 117 HG--------VVAVEVEGDSMEPVYSAGDLLFYSRNGHDSVPDDVVGYKCVCEDADGMGW 168 Query: 182 AKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + + L+SLN ++W AR+ Sbjct: 169 VKQVKAGDEPGLFHLISLNPTGANMW--NVRLKWAARV 204 >gi|88809063|ref|ZP_01124572.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. WH 7805] gi|88787005|gb|EAR18163.1| SOS function regulatory protein, LexA repressor [Synechococcus sp. WH 7805] Length = 207 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 8/125 (6%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 G G G T + R + + SM+ GD++++ Sbjct: 82 GIPVLGAVAAGGLVETFDDVQERLDLAPVLETRG-LFALTVNGDSMVDAHIADGDVVLME 140 Query: 161 SAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 I+ G + K I L + N Y V ++ + Sbjct: 141 PVIEPSRLREGTIVSALVPGSGTTLKYFHRDGA-VIRLEAANPAYDPIEVPADQVQVQGK 199 Query: 218 I--LW 220 + +W Sbjct: 200 LAAVW 204 >gi|157159776|ref|YP_001457094.1| helix-turn-helix/peptidase S24-like domain-containing protein [Escherichia coli HS] gi|157065456|gb|ABV04711.1| helix-turn-helix/peptidase S24-like domain protein [Escherichia coli HS] Length = 213 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 61/214 (28%), Gaps = 19/214 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + +T + L++ AG+ + + R R + + A Sbjct: 5 DQFPSRVSLARQSRGMTQAQLSKLAGVVQRQIAAYEGGEAKPRLR-----VLQALANALG 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T L K +L TG Sbjct: 60 TTAEWLALGEGQGPG---TKNVMPDVLVKQIPILKLDEVMHYLNTGEH-------SSSRF 109 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 H IY + + +M + +G ++ + ++ D ++ I++ Sbjct: 110 HPAIYNVGDSAFALTIEGEAMTTSSGISFPRGSVVTFSPLVKAKSKDYVIASLDKEQILS 169 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + +L+SLN YP V D+ +A Sbjct: 170 FKQVYIGEIETNLVSLNPMYPNILVRNEDVSILA 203 >gi|325300200|ref|YP_004260117.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides salanitronis DSM 18170] gi|324319753|gb|ADY37644.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides salanitronis DSM 18170] Length = 148 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 3/100 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + + SML GD+LI++ ++ GD ++ G+ Sbjct: 37 ESIDLNKELVRHPATTFYARAVGDSMLGCGIDDGDLLIIDKGLEPGDGDIVVAYID-GEF 95 Query: 181 VAKVLISRRGRS-IDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + S + LM N Y V + + +L Sbjct: 96 TLKRVRLEPDGSCLWLMPENDSYHPIKVTEENDFIVWGVL 135 >gi|1827863|pdb|1UMU|A Chain A, Structure Determination Of Umud' By Mad Phasing Of The Selenomethionyl Protein gi|1827864|pdb|1UMU|B Chain B, Structure Determination Of Umud' By Mad Phasing Of The Selenomethionyl Protein Length = 116 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K S + GD+LI++SAI + GD ++ Sbjct: 8 DYVE--QRIDLNQLLIQHPSATYFVKASGDSXIDGGISDGDLLIVDSAITASHGDIVIAA 65 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ N Y T+ D ++ ++ Sbjct: 66 VD-GEFTVKKLQLRP--TVQLIPXNSAYSPITISSEDTLDVFGVVI 108 >gi|91214910|ref|ZP_01251883.1| hypothetical protein P700755_18634 [Psychroflexus torquis ATCC 700755] gi|91187337|gb|EAS73707.1| hypothetical protein P700755_18634 [Psychroflexus torquis ATCC 700755] Length = 151 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM+ GD+LI++ +++ + G+ Sbjct: 49 IDLNREFIKNPNSTFYARVRGRSMVGAGLNDGDLLIIDRSLEPKDDKIAVCFVD-GEFTV 107 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + ++ L+ N YP V + I ++ Sbjct: 108 KRIKKEKD-TVWLIPENKEYPPIKVTADNEFVIWGMV 143 >gi|320654549|gb|EFX22567.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 158 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 14/127 (11%) Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDI 156 G E+ + + SM GD+ Sbjct: 22 DIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDL 81 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---I 212 L ++ ++ GD + K L + + ++S N Y +E + + Sbjct: 82 LFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRV 140 Query: 213 EWIARIL 219 +++ Sbjct: 141 FIFGKVI 147 >gi|110639449|ref|YP_679658.1| SOS mutagenesis protein UmuD [Cytophaga hutchinsonii ATCC 33406] gi|110282130|gb|ABG60316.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Cytophaga hutchinsonii ATCC 33406] Length = 139 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 6/100 (6%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 FP+ + + + T + + SM+ GD+L+++ +++ Sbjct: 26 FPSPAGD---YLDSRIDIYEYLIQHPTATFYVRVKGNSMINAAIHDGDLLVVDRSVEPKN 82 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 ++ G+ K + + L+ N + + Sbjct: 83 NQIVVAIID-GEFTVKRISKY-NNKLYLIPENEKFKPIEI 120 >gi|327469480|gb|EGF14949.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 257 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 59/228 (25%), Gaps = 21/228 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI----------------EGRNRW 52 I + + + + L+R+ G+ ++ + E Sbjct: 19 ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTSLPIAANLEKIAIFFEVEVEEID 78 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 P I I + L K + + + Sbjct: 79 PRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP-YLVYE 137 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 N + + PE I D + S+ P Y D + L + Sbjct: 138 NYYLSQHKPEQADLVWLNREID-YDIALWVRTDSLEPKYP-RDSVALIKQTHFELAGAIY 195 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G + K + + I L+SLN Y + + + I R++ Sbjct: 196 AIDYDGQTIIKRVFNDPTG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242 >gi|187250867|ref|YP_001875349.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Elusimicrobium minutum Pei191] gi|186971027|gb|ACC98012.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Elusimicrobium minutum Pei191] Length = 214 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 75/214 (35%), Gaps = 13/214 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + NLT LA+K GL ++ + + + + E + K L + Sbjct: 3 IGKKILQARRELNLTQKELAQKIGLPGSTIARWETDSFSPSPK--NIEKLSKALGREYKY 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL--YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + F+ + + + ++ + + +GVF G + + Sbjct: 61 FYETQEDIFTVFKKAKGEIRDNENIFSFHSDETKNEIKFAGVFKKGAA---IFFEDDDIS 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGDIVAKV 184 ++ I Q +D S+ P + K D L + + ++ + I + + Sbjct: 118 NSKNKTIPPQKLFFNVKDNSLSPDFEKTDTLEIITTKEIEPEYNGKYYIVEIKDEQLIYK 177 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 I+L S+ + + +E + R+ Sbjct: 178 CTVLGND-INL-SI--AGKTKRIPKNKVEILGRV 207 >gi|218667986|ref|YP_002426169.1| umuD protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520199|gb|ACK80785.1| umuD protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 164 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 9/109 (8%) Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170 G + + H + SM + GD ++++ AI G Sbjct: 57 GYVEQQIDLNTHLIQHREA------TFILRVSGWSMRDVGIFDGDEILVDRAITPVDGKI 110 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ GD+ K L G ++ L++ N +P ++ + I ++ Sbjct: 111 VVAAIN-GDLTVKRLRRI-GSAVHLVAENPEFPTIILKEGEELCIWGVV 157 >gi|121583547|ref|YP_973966.1| putative phage repressor [Polaromonas naphthalenivorans CJ2] gi|120596791|gb|ABM40224.1| putative phage repressor [Polaromonas naphthalenivorans CJ2] Length = 206 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 58/205 (28%), Gaps = 16/205 (7%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 L+R+ + + + K P ++ +I QLL Sbjct: 2 ELSRRMDVADGTLGRIKYASGN-----PQLANLVQIACFFKLRPWQLLVKDGYKLPRDFD 56 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-------- 137 K+ P+ + + + + A + Sbjct: 57 PSKQ-PVPKIEDGHVRISRFNARPSAILGSESESFSMVLGHIDVAEAWARKHLGVQLDSV 115 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLM 196 M P +GD+ +++ + D + + ++ K L + R I + Sbjct: 116 RAVTVAGDGMSPTINEGDLAFIDADCRRFETDGIYVVLFNEAVMTKRLSADFATRKIHVR 175 Query: 197 SLNCCYPVDTVEMSDIEWIARIL-W 220 S N + V +++ R+L W Sbjct: 176 SDNDKHDPQLVAQNELTICGRVLAW 200 >gi|167832382|ref|YP_001686773.1| prophage repressor [Halomonas phage phiHAP-1] gi|166836356|gb|ABY90405.1| prophage repressor [Halomonas phage phiHAP-1] Length = 234 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 73/222 (32%), Gaps = 18/222 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAAT 65 I AI + + LT L G D + ++ + + PS ++ I A Sbjct: 14 DIGSAIRHLRRQQGLTLQELCDAIGNDMQTGYLSRVETNKLN-----PSVYTVADIARAL 68 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 T+ +LL + ++ + + FP + + G++P T+ P Sbjct: 69 GTTVDELLKGSNTFHA-YKETKACRKIPVFPFVAAANPYAVGMYPPTTALTTIPSPVDVP 127 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRTGDI- 180 + + + + S ++ D L Q+ G +++ + + Sbjct: 128 LGSFGLILDDDSMQSS-EGLSFSQGSVVIFAPYDKNRLIREKQIQLGQYVIVHSQNARLG 186 Query: 181 ---VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + L++ L N YP+ + + ++ Sbjct: 187 TPPLFRQLVADGAE-YMLRPRNSRYPIRPLPPEPVFVGYAVV 227 >gi|282895783|ref|ZP_06303870.1| SOS-response transcriptional repressor, LexA [Raphidiopsis brookii D9] gi|281199283|gb|EFA74149.1| SOS-response transcriptional repressor, LexA [Raphidiopsis brookii D9] Length = 203 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 5/93 (5%) Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLI 186 I Q + SM L GD++ L + G + + K Sbjct: 105 LPIPPQSYALRVAGDSMIEDLIADGDLVFLRPVSEPNLMKNGTIVAARVEGYGTTLKRFY 164 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G ++ L N Y V +E ++ Sbjct: 165 -LEGDTVTLKPANSNYQPIQVPAIQVEIQGSLV 196 >gi|206900105|ref|YP_002251537.1| LexA repressor [Dictyoglomus thermophilum H-6-12] gi|206739208|gb|ACI18266.1| LexA repressor [Dictyoglomus thermophilum H-6-12] Length = 199 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 50/172 (29%), Gaps = 8/172 (4%) Query: 51 RWPSTESIFKILA-ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 R P+ + K L ++ + + G ++ K L G Sbjct: 26 RIPTVREVTKALGLNSSGSGYFHMKALVEKGYLSQDKNGRFYLKNLINEEVIYLPLIGTI 85 Query: 110 PTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNC 167 G + E P + I + K + SM GD++I+ Sbjct: 86 RAGIPVESPEYIEEYIPVPKNFVKIPEKSFLLKVRGDSMEGAHILDGDLIIVQKQDTAQK 145 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ G+ K L S L N Y + I +++ Sbjct: 146 GEIVVALKD-GESTVKFL-SENYGIPCLKPANPRYSEIYPP---FKIIGKVV 192 >gi|46579557|ref|YP_010365.1| Cro/CI family transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448972|gb|AAS95624.1| transcriptional regulator, Cro/CI family [Desulfovibrio vulgaris str. Hildenborough] gi|311233373|gb|ADP86227.1| putative phage repressor [Desulfovibrio vulgaris RCH1] Length = 255 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 72/230 (31%), Gaps = 22/230 (9%) Query: 4 FSHKKIWEAIDRMAERHN-LTPS---GLARKAGLDPT--SFNKSKRFGIEGRNRWPSTES 57 SH+ I+ A + + P+ AR+ + F + ++ + + + Sbjct: 31 LSHQAIYSA-----KSKGRIPPAWIYEAARRYDVSADWLFFGRGRKKVADPDESADPSPT 85 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + K + P + + ++ P + +G F TG Sbjct: 86 LEK-AEVARRLLATRQATPLDVEHDGIIECADCQIMMMPMVEARLSAGTGSFETGANVER 144 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPR 176 R +Q + SM P + D+++++ + G L Sbjct: 145 RY--AFRMDFLMRKGCPSQMVLMRVAGDSMEPEVKHNDVVLIDQSQLTPRPG-ALYAVGV 201 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221 + K LI+ + + S N YP V+ + I I R +W Sbjct: 202 EDMVYLK-LINATPGKLVMTSYNAAYPPLEVDARGDLANGIRIIGRAVWV 250 >gi|237803412|ref|ZP_04590997.1| transcriptional regulator PrtR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025393|gb|EGI05449.1| transcriptional regulator PrtR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 260 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 56/244 (22%), Gaps = 35/244 (14%) Query: 10 WEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + LT + AR L + + K G + + E ++ + Sbjct: 10 GQRFRQALADSGLTGAEFARVLDLENEQNITNWK---SRGVPAYMAGEVARTLVVERDWL 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + + + + + S Sbjct: 67 EGKDVPMRTDTTARNPTRAAANEPPLYVLEPLAPWDSDTPLENDEVELRLYKEVELSSGP 126 Query: 129 GIYA------------------------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 G A + S PL G + +++ + Sbjct: 127 GKVARTEVQEVSGPKLRFSRATMRTCGVDPSNAVFATNNGDSNHPLILSGATVGIDTGMT 186 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARI 218 + G K L I + S N Y + E D I + RI Sbjct: 187 RIIDGEIYAIDHDGHFRIKFLQRLPAG-IRMKSFNSSEYADEDYEFDDILAQRIVILGRI 245 Query: 219 LWAS 222 W S Sbjct: 246 FWWS 249 >gi|212711234|ref|ZP_03319362.1| hypothetical protein PROVALCAL_02306 [Providencia alcalifaciens DSM 30120] gi|212686129|gb|EEB45657.1| hypothetical protein PROVALCAL_02306 [Providencia alcalifaciens DSM 30120] Length = 137 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + E + ++ + + + SM+ GD++I++SA+ GD ++ Sbjct: 32 YMEERINLNSTLIKHPDSTYMLRVEGNSMIDANINDGDVVIVDSALVAKDGDIVIASVD- 90 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+ K L S L+ +N + + + D++ + Sbjct: 91 GEFTVKRLKSYPP---MLIPMNPDFQPIHIGDTQDLQIFGVV 129 >gi|253722209|pdb|1I4V|A Chain A, Solution Structure Of The Umud' Homodimer gi|253722210|pdb|1I4V|B Chain B, Solution Structure Of The Umud' Homodimer Length = 115 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 8 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 65 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 66 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 108 >gi|332162334|ref|YP_004298911.1| putative prophage repressor protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606400|emb|CBY27898.1| putative cI prophage repressor protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325666564|gb|ADZ43208.1| putative prophage repressor protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 207 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 22/204 (10%), Positives = 63/204 (30%), Gaps = 17/204 (8%) Query: 2 TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ + + + + ++ +A + G+ ++ N+ + Sbjct: 4 KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNK 114 + K+L + L + + L PP + + GN Sbjct: 62 AAFAKVLNEPISSFSPSLATELAKMAESLSISSLNRLNDKPPGTVANSYPLISWISAGNW 121 Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167 + T+ + +I + + SM + +G I++++ + Sbjct: 122 YETIEPYQLSDIEIWPESTKNAHDSAFWLRVKGDSMTSPSGISFPEGMIILVDPEKEPIP 181 Query: 168 GDRLL-IKPRTGDIVAKVLISRRG 190 G+ ++ + K LI G Sbjct: 182 GNFVVAKLTDDNEATFKKLIVDAG 205 >gi|260435498|ref|ZP_05789468.1| protein UmuD [Synechococcus sp. WH 8109] gi|260413372|gb|EEX06668.1| protein UmuD [Synechococcus sp. WH 8109] Length = 143 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V V + + T SM GD+L+++ ++ G ++ Sbjct: 34 ADDYVDV--GIDLNEQLIRHPTSTFFLHVSGESMTDAGIHDGDLLVVDRSLDPRPGQVVV 91 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G K L+ R + L + + YP + +++ Sbjct: 92 AVLD-GAFTLKRLMRHR-GRLRLEAAHPDYPPLELHRCGEVQI 132 >gi|182678381|ref|YP_001832527.1| putative phage repressor [Beijerinckia indica subsp. indica ATCC 9039] gi|182634264|gb|ACB95038.1| putative phage repressor [Beijerinckia indica subsp. indica ATCC 9039] Length = 225 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 21/217 (9%) Query: 7 KKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + ++ + + AR G + ++ + R E K + Sbjct: 2 DQPFHRLQIARQQAGFESATEAARAFGWNENTYRSHENGER--GLRIAIAERYAKAFDVS 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + ++ + + L+ +G+ + P G ++ V +P Sbjct: 60 AAWLLTG-ENEEDRQAPEKEPKYTVRLVGRIGAGAVIDSEFEQEPPG-GFDEVQIP---- 113 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVA 182 Y + + SM P Y GDI+I + G ++ G Sbjct: 114 -----YPAPSGAVAFEIVGDSMWPRYDPGDIVICWKVAQTRTEADGWEAAVRLTDGRRYL 168 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + DL+S N + IEW ++ Sbjct: 169 KTIRRVSKDRFDLISHNAS----PIHNVQIEWACKVF 201 >gi|227508752|ref|ZP_03938801.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191785|gb|EEI71852.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 263 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 65/229 (28%), Gaps = 25/229 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + ++++L+ + LAR+ G S ++ + + E + + + Sbjct: 33 ENLRYLRKKYHLSQTTLARRLGRKSVASVSEWESGKYTPKL--AIIEKVAALFEVDVTDL 90 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSP 126 ++ ++ + + P + ++ + P Sbjct: 91 LYRELGKANEPKSRPESFLSMYSKLTPDRQRKVYQRILKLQETESEDSQTPIEQPVTILK 150 Query: 127 HNGIYAI----------------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 D K +SMLP + I+ + +A + G Sbjct: 151 LEKTDLAITDEEESVNRPQKAGKPNFDFAVKIIGSSMLPNFHDQQIVFITAATKAENGQI 210 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218 +L K G + + LM N ++ D I + Sbjct: 211 VLAKVD-GKYYIRRYEKTSEGA-WLMPFNQDEAQVKIQDDTDFRLIGVV 257 >gi|261885710|ref|ZP_06009749.1| hypothetical protein CfetvA_11544 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 207 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 22/209 (10%), Positives = 54/209 (25%), Gaps = 32/209 (15%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + E + ++ A++ G+ + + + + E + K Sbjct: 2 IGNKIRALREENGISQKEFAKEFGIAYGTLQSYEYGLT--KPKTDFIEQLAKKFKIDVNY 59 Query: 69 ICQLLDLPFSDGRTTEK----------------------KEKEIPLLYFPPSGSGGFFDS 106 + + EI + + FF Sbjct: 60 FYDDCRQYVVNNDKKLSSICRQSPNLSPSKPLNALNLKKSQNEIHINIKEDTVYVPFFKD 119 Query: 107 GVFPTGNKWNTVG-----VPEIRSPHNGIYAIQT--QDTRHKTQDTSMLPLYRKGDILIL 159 G G +P + ++ + SM P +G++++ Sbjct: 120 GAVSAGFGTEDFANDCDFLPFKKQDLRLMFNAHSTANLAVIPCVGNSMQPTIEEGELVVF 179 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + G +++ ++ K L R Sbjct: 180 QQDGTQSEGAIYVVRF-ENELFVKRLKKR 207 >gi|323161382|gb|EFZ47289.1| peptidase S24-like family protein [Escherichia coli E128010] gi|323945404|gb|EGB41458.1| peptidase S24 [Escherichia coli H120] Length = 197 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 8/180 (4%) Query: 43 RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSG 101 RF +G + I + + L + T + + P S Sbjct: 11 RFMGDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISW 70 Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 + ++ V + + + SM+ YR GD++ ++ Sbjct: 71 VQAGAWK---EVGYSEVDL-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDP 126 Query: 162 AIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + GD ++ TG+ K LI + L +LN +P ++++ + I ++ Sbjct: 127 EVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 185 >gi|164688219|ref|ZP_02212247.1| hypothetical protein CLOBAR_01864 [Clostridium bartlettii DSM 16795] gi|164602632|gb|EDQ96097.1| hypothetical protein CLOBAR_01864 [Clostridium bartlettii DSM 16795] Length = 79 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 1/73 (1%) Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 + D ++++ + ++ K G ++ L N Sbjct: 1 MINAGILNNDYVVVDKGSTASNSQIVVALVNKESATVKRFFK-EGSTVRLQPENEFMEPI 59 Query: 206 TVEMSDIEWIARI 218 + D+E + + Sbjct: 60 ILNERDVEIVGTV 72 >gi|26247496|ref|NP_753536.1| DNA polymerase V subunit UmuD [Escherichia coli CFT073] gi|91210396|ref|YP_540382.1| DNA polymerase V subunit UmuD [Escherichia coli UTI89] gi|117623397|ref|YP_852310.1| DNA polymerase V subunit UmuD [Escherichia coli APEC O1] gi|218558107|ref|YP_002391020.1| DNA polymerase V subunit UmuD [Escherichia coli S88] gi|227886404|ref|ZP_04004209.1| DNA polymerase V subunit UmuD [Escherichia coli 83972] gi|237705138|ref|ZP_04535619.1| mutagenesis and repair protein UmuD [Escherichia sp. 3_2_53FAA] gi|301046821|ref|ZP_07193939.1| peptidase S24-like domain protein [Escherichia coli MS 185-1] gi|306813923|ref|ZP_07448096.1| DNA polymerase V subunit UmuD [Escherichia coli NC101] gi|26107897|gb|AAN80096.1|AE016759_370 UmuD protein [Escherichia coli CFT073] gi|85376582|gb|ABC70509.1| UmuD [Escherichia coli] gi|91071970|gb|ABE06851.1| UmuD protein [Escherichia coli UTI89] gi|115512521|gb|ABJ00596.1| mutagenesis and repair protein UmuD [Escherichia coli APEC O1] gi|218364876|emb|CAR02572.1| DNA polymerase V, subunit D [Escherichia coli S88] gi|222032978|emb|CAP75718.1| Protein umuD [Escherichia coli LF82] gi|226899895|gb|EEH86154.1| mutagenesis and repair protein UmuD [Escherichia sp. 3_2_53FAA] gi|227836608|gb|EEJ47074.1| DNA polymerase V subunit UmuD [Escherichia coli 83972] gi|294491049|gb|ADE89805.1| protein UmuD [Escherichia coli IHE3034] gi|300301240|gb|EFJ57625.1| peptidase S24-like domain protein [Escherichia coli MS 185-1] gi|305852560|gb|EFM53008.1| DNA polymerase V subunit UmuD [Escherichia coli NC101] gi|307553233|gb|ADN46008.1| protein UmuD [Escherichia coli ABU 83972] gi|307627299|gb|ADN71603.1| DNA polymerase V subunit UmuD [Escherichia coli UM146] gi|312945809|gb|ADR26636.1| DNA polymerase V subunit UmuD [Escherichia coli O83:H1 str. NRG 857C] gi|315288605|gb|EFU48003.1| peptidase S24-like domain protein [Escherichia coli MS 110-3] gi|315290751|gb|EFU50123.1| peptidase S24-like domain protein [Escherichia coli MS 153-1] gi|323187408|gb|EFZ72717.1| protein umuD [Escherichia coli RN587/1] gi|323949706|gb|EGB45592.1| peptidase S24 [Escherichia coli H252] gi|323953967|gb|EGB49766.1| peptidase S24 [Escherichia coli H263] gi|324006037|gb|EGB75256.1| peptidase S24-like domain protein [Escherichia coli MS 57-2] Length = 139 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLTPMNSAYSPITISSEDTLDVFGVVI 132 >gi|12084966|ref|NP_073259.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|17233502|ref|NP_490545.1| SamA [Salmonella typhimurium LT2] gi|60115500|ref|YP_209292.1| SamA protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161867914|ref|YP_001598095.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|167995153|ref|ZP_02576243.1| protein SamA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|224504282|ref|YP_002635622.1| SamA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261888739|ref|YP_003264428.1| mutagenesis by UV and mutagens; related to umuDC operon [Salmonella enterica subsp. enterica serovar Typhimurium] gi|305696890|ref|YP_003864205.1| mutagenesis by UV and mutagens related to umuDC operon [Salmonella enterica subsp. enterica serovar Typhimurium] gi|134195|sp|P23831|SAMA_SALTY RecName: Full=Protein samA; Contains: RecName: Full=Protein samA' gi|217088|dbj|BAA14225.1| UmuD [Salmonella enterica subsp. enterica serovar Typhimurium] gi|12060336|dbj|BAB20542.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|16445323|gb|AAL23541.1| mutagenesis by UV and mutagens; related to umuDC operon [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|45359324|gb|AAS58911.1| SamA protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161087293|gb|ABX56763.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|205327113|gb|EDZ13877.1| protein SamA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|224470991|gb|ACN48820.1| SamA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261857327|emb|CBA11400.1| mutagenesis by UV and mutagens; related to umuDC operon [Salmonella enterica subsp. enterica serovar Typhimurium] gi|267990091|gb|ACY86488.1| SamA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|304376192|dbj|BAJ15354.1| mutagenesis by UV and mutagens related to umuDC operon [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312915775|dbj|BAJ39748.1| protein SamA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|322713005|gb|EFZ04577.1| SamA protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132995|gb|ADX20424.1| mutagenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326626282|gb|EGE32626.1| protein samA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991451|gb|AEF10433.1| mutagenesis by UV and mutagens [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 140 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 9/124 (7%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 + FP+ E + + SM + G Sbjct: 14 STAPLFTERCPAGFPSPAAD---YTEEELDLNAYCIRRPAATFFVRAIGDSMKEMGLHSG 70 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 D+++++ A + GD ++ + G+ K L + I L+ +N YP +++ Sbjct: 71 DLMVVDKAEKPMQGDIVIAETD-GEFTVKRLQLKP--RIALLPINPAYPTLY--PEELQI 125 Query: 215 IARI 218 + Sbjct: 126 FGVV 129 >gi|156147239|gb|ABU53817.1| cje0215 [Campylobacter phage CGC-2007] gi|321442478|gb|ADW85791.1| phage repressor protein, putative [Campylobacter jejuni] Length = 113 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 3/109 (2%) Query: 112 GNKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G + + E I + + SM PL + G I +++ Sbjct: 1 GGINDLIDCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSI 60 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K ++ + I L SLN Y + D I ++ Sbjct: 61 CV-INTRDGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 107 >gi|188994990|ref|YP_001929242.1| putative error-prone repair: SOS-response transcriptional repressor UmuD homolog [Porphyromonas gingivalis ATCC 33277] gi|188594670|dbj|BAG33645.1| putative error-prone repair: SOS-response transcriptional repressor UmuD homolog [Porphyromonas gingivalis ATCC 33277] Length = 141 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ + + + SM GDIL+++ +++ GD + G+ Sbjct: 38 IDLNHELITHPYSTFYGRVKGNSMEDAHVFDGDILVIDKSLEARDGDMAVCFLD-GEFTL 96 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + I L N YP V + I I+ Sbjct: 97 KTI-RIKSEEILLEPANPDYPTIHVSADNDFVIWGIV 132 >gi|217327196|ref|ZP_03443279.1| transcriptional regulator, XRE family [Escherichia coli O157:H7 str. TW14588] gi|217319563|gb|EEC27988.1| transcriptional regulator, XRE family [Escherichia coli O157:H7 str. TW14588] Length = 190 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 27/200 (13%) Query: 27 LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86 +A+ G S + E R S + + AA + +++ ++ Sbjct: 1 MAKLCGWAAPS----RLGNYELGTRKVSADDALVLGAALGVSPAKIMFGED-----SDAV 51 Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 ++ F +G F + G + + V S + + + S Sbjct: 52 FRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPTTTKASE---------KAFWLEVKGHS 102 Query: 147 ML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMSLN 199 M P + +G +++++ A V GD + + K G S L+ LN Sbjct: 103 MTAPQGVRPSFPEGMLILVDPAEPVESGDFCVASANGDSEATFKKYEKDAGVSY-LVPLN 161 Query: 200 CCYPVDTVEMSDIEWIARIL 219 Y + S I +++ Sbjct: 162 PAYRTLDCDHS-CRIIGKVV 180 >gi|113953219|ref|YP_730811.1| UmuD protein [Synechococcus sp. CC9311] gi|113880570|gb|ABI45528.1| UmuD protein [Synechococcus sp. CC9311] Length = 147 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + V + + + + SM GD+L+++ ++ + G ++ Sbjct: 38 ADDYIDV--GIDLNEQLIRHPSSTFFLRVSGDSMTGEGIHHGDLLVVDRSLDPHPGRVVV 95 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G K L+ R + L + N YP + D++ Sbjct: 96 AILD-GAFTLKRLVRHR-GHLRLEAANPDYPHLDLHHCGDVQI 136 >gi|150017433|ref|YP_001309687.1| prophage repressor [Clostridium beijerinckii NCIMB 8052] gi|149903898|gb|ABR34731.1| putative prophage repressor [Clostridium beijerinckii NCIMB 8052] Length = 512 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 5/104 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172 + + S K + SM+ GD ++++ D + Sbjct: 404 INEYIE--DSYSLPKDWIRTSKDVFMLKVKGDSMINKNIYDGDYVVISKQNMPRIKDIV- 460 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G+ K I L+ N Y +E + Sbjct: 461 AVDIEGEATLKTYKVI-DGKIALIPENDKYQPIIIEDQQFNVLG 503 >gi|325271052|ref|ZP_08137637.1| hypothetical protein HMPREF9141_2847 [Prevotella multiformis DSM 16608] gi|324986650|gb|EGC18648.1| hypothetical protein HMPREF9141_2847 [Prevotella multiformis DSM 16608] Length = 236 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 71/233 (30%), Gaps = 19/233 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI------EGRNRWPSTE 56 ++ I+ ++ S AR G+ P + N + S E Sbjct: 1 MEKKDRLLRLIEHYSDG---NKSEFARMIGVSPQAVNTWISRNTFDIDIVYAKCVSISPE 57 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKW 115 + + Q + T K P S V P + Sbjct: 58 WLLTGKGPMLKPTIQEPQVTTQPSTPTAKDRLPEAFRCLDPLHSTQELIPLVTPKVAAGF 117 Query: 116 NTVGVPEIRSPHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDIL---ILNSAIQVNC 167 + +S Y I D + SM P Y GDI+ I++++ + Sbjct: 118 GSADFVIAKSDVKEYYVIPKWKRQHVDFMIEVTGDSMQPKYNAGDIVGCTIIHNSGFIQW 177 Query: 168 GDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +I R ++ K L+ S+ +S N YP + +I IA ++ Sbjct: 178 NRPHVIATREQGLLIKRLMPGTTTNSLSAVSENTQYPPFDIPKEEITGIALVI 230 >gi|325961650|ref|YP_004239556.1| SOS response UmuD protein [Arthrobacter phenanthrenivorans Sphe3] gi|323467737|gb|ADX71422.1| SOS response UmuD protein [Arthrobacter phenanthrenivorans Sphe3] Length = 128 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 4/81 (4%) Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 + SM GD LI+N A++ G ++ G++ K L + Sbjct: 39 STFVVRVTGDSMEGAGISDGDELIVNRALEPKDGSVVIAVLD-GELTVKRL-RLTAAGVV 96 Query: 195 LMSLNCCYPVDTVEM-SDIEW 214 L + N YP V S++ Sbjct: 97 LQAENPKYPDIRVPALSELTI 117 >gi|82542851|ref|YP_406799.1| phage repressor [Shigella boydii Sb227] gi|81244262|gb|ABB64970.1| putative phage repressor [Shigella boydii Sb227] Length = 224 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 13/222 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H ++ + S A +PT ++ G I K Sbjct: 1 MKTI-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58 Query: 61 ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + K+I L+ G + ++ V Sbjct: 59 CFDLPIGWLDQEHQTTNITKKPEVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178 + + + SM+ YR GD++ ++ + GD ++ TG Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + K LI + L +L+ +P ++++ + I ++ Sbjct: 172 ETTFKRLIEDGTQRY-LKALHPNWPEPYIKINGNCSIIGTVI 212 >gi|323669712|emb|CBJ94835.1| UV protection protein [Salmonella bongori] Length = 140 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 6/133 (4%) Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 + I + P + + F E + + + SM Sbjct: 3 QFIHIASIPEALTIPLFTERCAAGFPSPAADYTEEELDLNAYCIRRPSSTFFVRAIGDSM 62 Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 + GD+++++ A + GD ++ G+ K L + I L+ +N YP Sbjct: 63 RDMGLHSGDLMVVDKAEKPLQGDIVI-AETEGEFTVKRLQLKP--RIALLPMNPAYP--V 117 Query: 207 VEMSDIEWIARIL 219 + +++ ++ Sbjct: 118 LYPEELQIFGVVI 130 >gi|170755273|ref|YP_001780542.1| putative LexA repressor [Clostridium botulinum B1 str. Okra] gi|169120485|gb|ACA44321.1| LexA repressor [Clostridium botulinum B1 str. Okra] Length = 531 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/162 (10%), Positives = 36/162 (22%), Gaps = 4/162 (2%) Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + E + + G Sbjct: 363 NMDKFEYVDMKHRRSYEFSRGLGSNEEIIVEDQGSKEEYKEDELTKLPVFNDIAAGEPIL 422 Query: 117 TVGVPEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + K + SM+ GD +++ D + Sbjct: 423 MNPCVEGEFNIPKYWVRGMKNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AV 481 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G K L+ ++ ++ L+ N Y + I Sbjct: 482 NLEGSATLKRLLIKKSGAV-LIPENKKYKPIEIREEGASIIG 522 >gi|78212467|ref|YP_381246.1| LexA repressor [Synechococcus sp. CC9605] gi|78196926|gb|ABB34691.1| LexA repressor [Synechococcus sp. CC9605] Length = 207 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 47/191 (24%), Gaps = 8/191 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 I PS + + L + +L L T ++ + Sbjct: 13 QQELYDWIADYIGTHRHSPSIRQMMQAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQ 72 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LY 151 L G+ G G G + + + SM+ Sbjct: 73 LLGDMVGAAGIPVLGAVAAGGLVTAFDDVQEHLDLAPVLETRG-LFALTVNGDSMVDSHI 131 Query: 152 RKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 GD++++ G + K ++ L + N Y + Sbjct: 132 ADGDVVLMEPVQDPQRLRNGTVVSALVAGSGTTLKHFHRHGA-TVVLEAANPAYQPIELA 190 Query: 209 MSDIEWIARIL 219 ++ R++ Sbjct: 191 AEQVDVQGRLV 201 >gi|303327918|ref|ZP_07358357.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] gi|302861744|gb|EFL84679.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] Length = 247 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 73/236 (30%), Gaps = 27/236 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +KI + ++ + + LA+ AG+ + ++ + + P I +L Sbjct: 11 EKILRVLKEGVTQYG-SATALAKAAGVSNANLSRWIN-----KIQSPRMSEISPLLDVLK 64 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I + D K PP V G + E++S Sbjct: 65 INITKPDAEASRDVCFVNAKVVPAGQYATPPVAEDYIAAPMVGEVGAGPGYLPEDEVKSW 124 Query: 127 HNGIYAIQ-----TQDTRHKT--QDTSMLPLYRKGDILILNSAIQV--NCGDRL-LIKPR 176 + + TSM P GDI++++ + G + ++ P Sbjct: 125 FLAYKNLPAIRHRRNLIAVEIGPTSTSMQPTLNPGDIVLVDRDDRDVTKPGHMMLVLDPD 184 Query: 177 TGDIVAKVL---ISRRGRSIDLMSLN-CCYPVDTVEMS-------DIEWIARILWA 221 G + K + + + S N +P + D + R++WA Sbjct: 185 DGSGMIKRVSVTERKDDFQVTYYSDNGSKWPPMIYSLKQDFCDDWDKAIVGRVIWA 240 >gi|302879604|ref|YP_003848168.1| Peptidase S24/S26A/S26B, conserved region [Gallionella capsiferriformans ES-2] gi|302582393|gb|ADL56404.1| Peptidase S24/S26A/S26B, conserved region [Gallionella capsiferriformans ES-2] Length = 146 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 4/115 (3%) Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPL-YRKGDILILNSAIQ 164 P G E R + + + SM+ GD+L+++ ++ Sbjct: 26 HKVPAGFPSPADDYIEGRLSLDQHLIQHKDATFFVRAKGNSMVGAGIFDGDLLVVDRSLN 85 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + GD ++ ++ K LI R + L N + ++ + ++ Sbjct: 86 PSSGDIVIAVLDA-ELTVKRLIRR-DGMVILKPENPDFSEIVLKEGQELQVWGVV 138 >gi|218689126|ref|YP_002397338.1| DNA polymerase V subunit UmuD [Escherichia coli ED1a] gi|312966417|ref|ZP_07780639.1| UmuD protein [Escherichia coli 2362-75] gi|331646495|ref|ZP_08347598.1| protein UmuD [Escherichia coli M605] gi|218426690|emb|CAR07525.1| DNA polymerase V, subunit D [Escherichia coli ED1a] gi|281178338|dbj|BAI54668.1| mutagenesis and repair protein UmuD [Escherichia coli SE15] gi|312288870|gb|EFR16768.1| UmuD protein [Escherichia coli 2362-75] gi|315296574|gb|EFU55869.1| peptidase S24-like domain protein [Escherichia coli MS 16-3] gi|330911045|gb|EGH39555.1| error-prone repair protein UmuD [Escherichia coli AA86] gi|331045247|gb|EGI17374.1| protein UmuD [Escherichia coli M605] Length = 139 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIIIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132 >gi|282898795|ref|ZP_06306782.1| SOS-response transcriptional repressor, LexA [Cylindrospermopsis raciborskii CS-505] gi|281196322|gb|EFA71232.1| SOS-response transcriptional repressor, LexA [Cylindrospermopsis raciborskii CS-505] Length = 232 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 5/93 (5%) Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLI 186 I Q + SM L GD++ L + G + + K Sbjct: 127 LPIPPQSYALRVAGDSMIEDLIADGDVVFLRPVAEPNLMKNGTIVAARVEGYGTTLKRFY 186 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G + L N Y V +E ++ Sbjct: 187 -LEGDMVTLKPANSNYQPIQVPAIHVEIQGSLV 218 >gi|33240785|ref|NP_875727.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238314|gb|AAQ00380.1| SOS-response transcriptional repressor LexA [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 202 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 8/192 (4%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I PS + + + Q + KE + L Sbjct: 10 QQELFDWLSDYIASHQHSPSIRQMMDGMGLRSPAPIQSRLRHLQEKGWITWKEGQARTLQ 69 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + G G G T + + + + SM+ Sbjct: 70 LLDNALSGVPVLGAVAAGGLVETFDDVQETLDMSSVLKTRG-LFALTVNGDSMVDSYIAN 128 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++++ + G + K + G + L + N Y ++ Sbjct: 129 GDVVLMEPVQEPSLIRNGTVVSAMVPGSGTTLKHFYRK-GSLVILEAANPAYEPIEIDAE 187 Query: 211 DIEWIARI--LW 220 ++ ++ +W Sbjct: 188 MVKIQGKLLAVW 199 >gi|28895791|ref|NP_802141.1| repressor protein [Streptococcus pyogenes SSI-1] gi|28811040|dbj|BAC63974.1| putative repressor protein [Streptococcus pyogenes SSI-1] Length = 236 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 62/233 (26%), Gaps = 39/233 (16%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 +NL LA + +SFN+ + P+ ++ KI + Sbjct: 3 ENNLKQGHLADALEIPRSSFNEYVKGNS-----LPNPGNVQKIADYFGLMKSDIDPRFAP 57 Query: 79 DGRTTEKK-------------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + E K ++ +L F + + Sbjct: 58 RKKNHELKIPTSPLVKKITTTVVELKVPRKQKVLDFATEQLKEQKNKITSIEKKLYEYKV 117 Query: 120 VPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 ++ + Y D SM P Y G+++++ Sbjct: 118 YEKLSAGTGYGYFGDGNYDTVFYDEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGFDYE 177 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219 G G K + +G + L+SLN Y S+ I I+ Sbjct: 178 GGI-YAVEWDGQTYIKKVYREKGG-LRLVSLNKKYNDKFAPFSEGPRIIGEIV 228 >gi|148240016|ref|YP_001225403.1| SOS-response transcriptional repressor LexA [Synechococcus sp. WH 7803] gi|147848555|emb|CAK24106.1| SOS-response transcriptional repressor LexA [Synechococcus sp. WH 7803] Length = 207 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 8/176 (4%) Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 PS + + + + Q +E + L + G G Sbjct: 31 HSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQLLGGVASGIPVLGAVA 90 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV---N 166 G T + R + + SM+ GD++++ + Sbjct: 91 AGGLVETFDDVQERLDLAPVLETRG-LFALTVNGDSMVDAHIADGDVVLMEPVTEPSRLR 149 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220 G + K + L + N Y + ++ ++ +W Sbjct: 150 EGTIVSALVPGSGTTLKHFHRDGA-VVRLEAANPAYEPIELPADQVQVQGKLAAVW 204 >gi|218961278|ref|YP_001741053.1| Protein umuD [Contains: Protein umuD'] [Candidatus Cloacamonas acidaminovorans] gi|167729935|emb|CAO80847.1| Protein umuD [Contains: Protein umuD'] [Candidatus Cloacamonas acidaminovorans] Length = 147 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 100 SGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 S P G E + + + SM DIL Sbjct: 21 QYRPLMSSKIPAGFPSPAQDYIEGKLDLNEYLIVHPASTFFVRVDGYSMQGAGIMPDDIL 80 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 I++ A++ ++ G++ K L +G+ L+ N + ++ I Sbjct: 81 IVDRALEATNNRIVIAIVD-GELTVKRL-KIKGKKYYLVPENDEFEPILIQEGMDFIIWG 138 Query: 218 IL 219 ++ Sbjct: 139 VV 140 >gi|9187582|emb|CAB96972.1| hypothetical protein [Pseudomonas syringae pv. pisi] Length = 144 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165 P G V E + + ++ K SM+ D+++++ + Sbjct: 22 QVPAGFASPAVDYIEKHVSLDEMAEVRAPHVYLAKILGDSMIGAGIFDRDLIVVDRSRNA 81 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G+ ++ + + K L + L S N YP + D I ++ S Sbjct: 82 EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENTAYPARHILEGDNLVIWGVVNYS 137 >gi|296107978|ref|YP_003619679.1| hypothetical protein lpa_03412 [Legionella pneumophila 2300/99 Alcoy] gi|295649880|gb|ADG25727.1| hypothetical protein lpa_03412 [Legionella pneumophila 2300/99 Alcoy] Length = 231 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 75/217 (34%), Gaps = 16/217 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + + + + +N++ S LAR GL + ++ G P ++ I A Sbjct: 19 NENLSNNLSLLMKENNVSESDLARALGLPYNTIHRL----ASGHTTDPRISTLKSIAAYF 74 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 N ++ LL+ S + + N N + +P + Sbjct: 75 NVSLDTLLNPIESVTNPLKTNSNPKAVPIISWEQISNNEFLSSIDHQNWVNWLPIPLVSI 134 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKV 184 + + +++ SM P + G +++ + GD L+ + G + + Sbjct: 135 DN-----LSLNAYALESR-PSMYPRFPTGTFFVIDPECKPIDGDLILIKIKKDGAVSLRE 188 Query: 185 LISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARIL 219 L+ + L+ + N S+ E I ++ Sbjct: 189 LMIDPP-IMKLLPIIQNSD--SLNFVESEHEIIGVVI 222 >gi|255021590|ref|ZP_05293633.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus ATCC 51756] gi|254968978|gb|EET26497.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus ATCC 51756] Length = 202 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 5/185 (2%) Query: 29 RKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQLLDLPFSDGRTTEKKE 87 K + ++ + P E + + L G ++ Sbjct: 2 EKLSRRQAEILQWLHRYVQEHDAPPTRVELMQAFAFQSPNAAESHLRTLERKGYLQLQRG 61 Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 + + G G G + E P D + Q SM Sbjct: 62 RARGIRLTEALPQDGLPLVGRVAAGQPILSEAHLEAYLPAADRLF-PEADFLLRVQGMSM 120 Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 GD+L + +V+ G +++ ++ K G + L+ N + Sbjct: 121 RDAGILDGDLLAVQRCAEVHNGQIAVVR-LEDEVTVKRWQR-EGERLWLLPENPDFAPIQ 178 Query: 207 VEMSD 211 V++ Sbjct: 179 VDLGR 183 >gi|66045998|ref|YP_235839.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] gi|63256705|gb|AAY37801.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] Length = 143 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 5/119 (4%) Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILN 160 + S + G E + +++I+ SM GD+ I++ Sbjct: 17 PWFSSLVSAGFPSPAADHIEKHISLDELFSIRAPHVYLVTVLGESMQGAGIHSGDLAIVD 76 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 +++ GD ++ + V K L R + L S N + + E ++ + + Sbjct: 77 RSLEAEHGDIVVAALNA-EAVCKRLH-MRNDVVILQSENPHFAPRHIMEGDELSILGVV 133 >gi|213972206|ref|ZP_03400288.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1] gi|302063813|ref|ZP_07255354.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato K40] gi|302133150|ref|ZP_07259140.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923035|gb|EEB56648.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1] Length = 144 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165 P G V E + + ++ K SM+ D+++++ + Sbjct: 22 QVPAGFASPAVDYIEKHVSLDEMAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRNA 81 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G+ ++ + + K L + L S N YP + D I ++ S Sbjct: 82 EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENSAYPAKHILEGDNLVIWGVVNYS 137 >gi|313205405|ref|YP_004044062.1| sos response umud protein [Paludibacter propionicigenes WB4] gi|312444721|gb|ADQ81077.1| SOS response UmuD protein [Paludibacter propionicigenes WB4] Length = 153 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 8/124 (6%) Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 F G G + + + + + T K + TSM GDIL+ Sbjct: 27 PFVDGGIAAGFPSPAQDYIDL--KIDLNTELINNPTSTFYAKVKGTSMQDAGIMDGDILV 84 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ ++ GD + G+ K + I L+ N + V + I I Sbjct: 85 VDKSLDPKDGDTAVCFID-GEFTLKYIKFETD-VIYLVPANPKFEPIKVTEENNFCIWGI 142 Query: 219 LWAS 222 + S Sbjct: 143 VTYS 146 >gi|330954045|gb|EGH54305.1| peptidase S24, S26A and S26B [Pseudomonas syringae Cit 7] Length = 143 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%) Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILN 160 + S + G E + +++I+ SM GD+ I++ Sbjct: 17 PWFSSLVSAGFPSPAADHIEKHISLDELFSIRAPHVYLVTVLGESMQGAGIHSGDLAIVD 76 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 +++ GD ++ + V K L R + + L S N + + E ++ + + Sbjct: 77 RSLEAEHGDIVVAALNA-EAVCKRLH-MRNKVVILQSENPHFAPRHIMEGDELSILGVV 133 >gi|312971283|ref|ZP_07785461.1| peptidase S24-like family protein [Escherichia coli 1827-70] gi|310336485|gb|EFQ01671.1| peptidase S24-like family protein [Escherichia coli 1827-70] Length = 173 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 14/127 (11%) Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDI 156 G E+ + + SM GD+ Sbjct: 37 DIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDL 96 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---I 212 L ++ ++ GD + K L + + ++S N Y +E + + Sbjct: 97 LFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRV 155 Query: 213 EWIARIL 219 +++ Sbjct: 156 FIFGKVI 162 >gi|77414342|ref|ZP_00790499.1| putative prophage LambdaSa1, repressor protein [Streptococcus agalactiae 515] gi|77159634|gb|EAO70788.1| putative prophage LambdaSa1, repressor protein [Streptococcus agalactiae 515] Length = 259 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 64/258 (24%), Gaps = 48/258 (18%) Query: 2 TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 +K+I+ + ER + + L GL T+ + R E + + Sbjct: 4 KKLENKEIFSKNLAFYMERKRVDRNTLCADLGLKYTTVRDWLKGIT--YPRIGKIELLAE 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG------------------- 101 + + + + + + I L + + Sbjct: 62 YFSINKSDLIEEHSTNGATSKVNFDPRQAILLSNYSKLNNVRKNKLLAISETLLSEEQGK 121 Query: 102 -----------------GFFDSGVFPTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 G G W + + Sbjct: 122 VINLQEKMAEYGSRKRVSLSVPGKVSAGTGYWQEDDYDTEVDFYADEIPDEKNYDTVAVV 181 Query: 144 -DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P + GD L + A QV+ + G+ K L + L SLN Y Sbjct: 182 VGHSMEPKIKNGDFLFIKLADQVDINKIGI-FQVNGENYVKKLKND-----YLQSLNPKY 235 Query: 203 PVDT-VEMSDIEWIARIL 219 T E D I ++ Sbjct: 236 ADITPAEGDDFRTIGEVV 253 >gi|94970418|ref|YP_592466.1| putative prophage repressor [Candidatus Koribacter versatilis Ellin345] gi|94552468|gb|ABF42392.1| putative prophage repressor [Candidatus Koribacter versatilis Ellin345] Length = 247 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 67/244 (27%), Gaps = 47/244 (19%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------------------- 55 R+ + S A G+ S ++ ++ G R PS Sbjct: 10 RLRAYLKMNQSQFADALGVTQASVSRWEQKGAS--TRGPSRGAWTSMYFLGFDTPLANEL 67 Query: 56 --------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 E++ ++ + + + + IPLL + Sbjct: 68 YERAGLDPEAVKRLARDFRDDLSGRETTYVRENGDGPVEGVAIPLLTDKAAAG----QPR 123 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 + + + P PH T + + SM P+ G I+ ++++ + Sbjct: 124 LINEKDIQKYLLFPREMVPH------PTSTRCMRVRGDSMAPIVDDGYIVAVDTSERDPR 177 Query: 168 ---GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN--CCYPVDTVEMSD--IEWIARI-L 219 + + K L L+ + + ++ + I R+ Sbjct: 178 KLVESMVAVSDPESGCTIKWLRQAGRARFLLVPQHTSPRHNPIVLDPKEEGWRIIGRVLF 237 Query: 220 WASQ 223 W Q Sbjct: 238 WIGQ 241 >gi|327254894|gb|EGE66510.1| peptidase S24-like family protein [Escherichia coli STEC_7v] Length = 156 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 14/127 (11%) Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDI 156 G E+ + + SM GD+ Sbjct: 20 DIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDL 79 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---I 212 L ++ ++ GD + K L + + ++S N Y +E + + Sbjct: 80 LFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRV 138 Query: 213 EWIARIL 219 +++ Sbjct: 139 FIFGKVI 145 >gi|319743917|gb|EFV96303.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 101 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 13/105 (12%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 T+ +P D SM P Y GD + + ++++ GD + Sbjct: 3 ETIELPVDYDA----------DFVIPVYGDSMEPDYHSGDYVFVKLSVELVDGDIGV-FE 51 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 GD K L+ + L SLN Y ++ D I ++ Sbjct: 52 YYGDAYIKQLLINNEGAF-LHSLNDKYSDIQIDRDSDFRIIGEVM 95 >gi|322835568|ref|YP_004215594.1| peptidase S24/S26A/S26B [Rahnella sp. Y9602] gi|321170769|gb|ADW76467.1| Peptidase S24/S26A/S26B, conserved region [Rahnella sp. Y9602] Length = 139 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM GD+L+++ ++ GD ++ Sbjct: 32 DYVE--DRLDLNKLLIRHPSATYFIKVSGESMHGAGISDGDLLVVDRSLSAVHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219 +G+ K L + + L+ N Y + + ++E ++ Sbjct: 90 -VSGEFTVKELRTHP--YLQLVPHNDDYSSISFQNAEELEIFGVVI 132 >gi|294665736|ref|ZP_06731010.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604520|gb|EFF47897.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 210 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 31/218 (14%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 +T + LA KAG+ + + + + + SI +I A + L Sbjct: 1 MTQTALAAKAGISQQAIARLESGQVA------KSGSIIEIANALGVSAAWLALGEGPMEA 54 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ----- 136 EK S GN V E S +++ + Sbjct: 55 GLSAIEKPE-----AHDYVDVIGYSQAAGLGNGAEAVEYAETHSLKFKKTSLRRRGIFGK 109 Query: 137 -DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG----DIVAKVLISRRGR 191 + + SM P GD ++ +++ L + G + K + Sbjct: 110 PLAVYYGKGDSMEPTIEDGDAILFDTSDTRVIDGVLYVIQVDGMAYPEYYVKR--ALVAD 167 Query: 192 SIDL-MSLNCC-----YPVDTVE--MSDIEWIARILWA 221 I L S N ++ I I R+ W Sbjct: 168 GITLFQSDNPAGDHNWKRPRRMDSKREPITVIGRVHWI 205 >gi|238762774|ref|ZP_04623743.1| Protein umuD' [Yersinia kristensenii ATCC 33638] gi|238699079|gb|EEP91827.1| Protein umuD' [Yersinia kristensenii ATCC 33638] Length = 148 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 9/131 (6%) Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 L FP+ + V P + A + SM Sbjct: 11 QLREIVLIPLFNETIPAGFPSPAA-DYVERP--LDLNELCIAHPAATYFVRVSGNSMTGA 67 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 G +L+++ ++ GD ++ G+ K L + L ++N Y + Sbjct: 68 GIYDGSLLVVDRSVTAQHGDIIIAA-VGGEFTVKKLCLHP--VVQLEAMNPDYAPIVLSD 124 Query: 210 --SDIEWIARI 218 D+E + Sbjct: 125 GGDDLETFGVV 135 >gi|333030045|ref|ZP_08458106.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides coprosuis DSM 18011] gi|32451210|emb|CAD55716.1| putative UV repair protein [Bacteroides coprosuis] gi|332740642|gb|EGJ71124.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides coprosuis DSM 18011] Length = 146 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 3/102 (2%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + SM+ GDIL+++ +++ GD + Sbjct: 37 YMESAIDLNKELIKHPASTFYGRVKGDSMIDANVHDGDILVIDKSLEPQNGDMAVCFID- 95 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K I I L N Y V + + I I+ Sbjct: 96 GEFTIK-YIRLEKDVIWLEPANENYEPIKVTIENDFLIWGIV 136 >gi|2914397|pdb|1AY9|A Chain A, Wild-Type Umud' From E. Coli gi|2914398|pdb|1AY9|B Chain B, Wild-Type Umud' From E. Coli Length = 108 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 1 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 58 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 59 VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 101 >gi|254238745|ref|ZP_04932068.1| ultraviolet light resistance protein A [Pseudomonas aeruginosa C3719] gi|126170676|gb|EAZ56187.1| ultraviolet light resistance protein A [Pseudomonas aeruginosa C3719] Length = 143 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 5/108 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + I A + SM+ GD+++++ + + GD ++ Sbjct: 33 DHLEREISLDEILQIRA--PHTYLVRAGGDSMIRAGIHDGDLMVVDRSREAEPGDIVIAA 90 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G+ K L + + L + N Y + D + ++ S Sbjct: 91 VN-GEPTVKRLAKDGNQ-VVLRAENPRYAPRYILEGDELLVWGVVRYS 136 >gi|19746277|ref|NP_607413.1| repressor protein [Streptococcus pyogenes MGAS8232] gi|19748465|gb|AAL97912.1| repressor protein [Streptococcus pyogenes MGAS8232] Length = 274 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 63/272 (23%), Gaps = 65/272 (23%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-------------------------- 41 K+ E I E L+ A K+GL + Sbjct: 2 KLGEIIKNFREEKKLSMDRFAEKSGLTKGYISMLEKNEHPKSKKPIIPTEETLLKVAKGM 61 Query: 42 -----------------------KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 K P+T + I + + L S Sbjct: 62 GVDIDFVLSKLDSDQEIQINISPKNMLNMDNPSTPTTPKVELIPSTLQKINSTSSQLEHS 121 Query: 79 DGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + G V + Sbjct: 122 RQIIVLDTAETLLEQQKEIKNNEDTIAELFSYNYYDHAASAGTGQYLNDVQVEKIELPVD 181 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 Y D SM P Y GD + + ++++ GD + GD K L+ Sbjct: 182 Y---DADFVIPVYGDSMEPKYHSGDYVFVKLSVELTDGDIGV-FEYYGDAYIKQLLINAE 237 Query: 191 RSIDLMSLNC--CYPVDTVEMS-DIEWIARIL 219 + L SLN YP ++ D I ++ Sbjct: 238 GAF-LHSLNQCGDYPDIPIDRDSDFRIIGEVM 268 >gi|330503085|ref|YP_004379954.1| protein MucA [Pseudomonas mendocina NK-01] gi|328917371|gb|AEB58202.1| protein MucA [Pseudomonas mendocina NK-01] Length = 143 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 6/107 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172 + V S + + + SM GDI++++ ++ G ++ Sbjct: 31 AEDHVD--ANLSLDDLCVQHPAATFFLRVRGDSMRDLGIFDGDIVVVDRSLTPRVGMVVV 88 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G K L S+ GR + L + N YP + E ++E + Sbjct: 89 ALVN-GAFTCKQLGSQDGRPV-LHAANPAYPDIHLGEGEELEIFGVV 133 >gi|52424799|ref|YP_087936.1| LexA repressor [Mannheimia succiniciproducens MBEL55E] gi|52306851|gb|AAU37351.1| LexA protein [Mannheimia succiniciproducens MBEL55E] Length = 225 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 31/210 (14%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62 ++++ + E + P + ++R+ G R P+ E K L Sbjct: 23 QQEVFNFLKHHIETTGMPPTRAEISRELGF-----------------RSPNAAEEYLKAL 65 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + T+ + G G G E Sbjct: 66 ARKG--------VVEILSGTSRGIRLLVDTEESANDEDAGLPLIGRVAAGEPILAEQHIE 117 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + D K SM + GD+L ++S V G ++ + ++ Sbjct: 118 GTYKVDADMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQVIVARI-EDEVT 176 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L + G + L + N + V + + Sbjct: 177 VKRLERK-GDVVYLHAENEEFKPIVVNLKE 205 >gi|213971544|ref|ZP_03399655.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1] gi|301386149|ref|ZP_07234567.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato Max13] gi|302060711|ref|ZP_07252252.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato K40] gi|213923736|gb|EEB57320.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1] Length = 143 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 5/119 (4%) Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILN 160 + S + G E + +++I+ SM GD+ I++ Sbjct: 17 PWFSSLVSAGFPSPAADHIEKHISLDELFSIRAPHVYLVTVLGESMQGAGIHSGDLAIVD 76 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 +++ GD ++ + V K L R + L S N + + E ++ + + Sbjct: 77 RSLEAEHGDIVVAALNA-EAVCKRLH-MRNEVLILQSENPHFAPRHIMEGDELSILGVV 133 >gi|330968287|gb|EGH68547.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. actinidiae str. M302091] Length = 135 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 3/114 (2%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165 P G V E + + ++ K SM+ D+++++ + Sbjct: 22 QVPAGFASPAVDYIEKHVSLDEMAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRNA 81 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ + + K L + L S N YP + D I ++ Sbjct: 82 EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENSAYPAKHILEGDNLVIWGVV 134 >gi|224367507|ref|YP_002601670.1| UmuD1 [Desulfobacterium autotrophicum HRM2] gi|223690223|gb|ACN13506.1| UmuD1 [Desulfobacterium autotrophicum HRM2] Length = 139 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 6/125 (4%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 FP+ + + + + + SM+ G Sbjct: 13 ISCPICISSVEAGFPSPA-EDYME--GSLDLNRHLIKHPAATFFVRVSGDSMINAGIHPG 69 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 DILI++ +++ ++ G++ K L R I L N Y ++ Sbjct: 70 DILIVDRSLEATDKKIVIAVID-GELTVKRLRYRNA-LISLEPENEDYHPISITQEKSME 127 Query: 215 IARIL 219 I ++ Sbjct: 128 IWGVV 132 >gi|73748675|ref|YP_307914.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|147669434|ref|YP_001214252.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432701|ref|YP_003462574.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660391|emb|CAI82998.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|146270382|gb|ABQ17374.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288946421|gb|ADC74118.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 214 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 10/212 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + TP L ++GL K ++ + + + K+ A Sbjct: 4 IGEKIREFRKARGWTPEYLGTRSGLSGQYIRKLEKGERQ----SITLATANKLSNAFGIE 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +L+ + + F + G P +N + P + Sbjct: 60 PAKLISENDNSSPRQIEDILAEVRSIFKRLETVEVCVHGCMPERKTYNELAYKSFLIPRS 119 Query: 129 GIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 I + +D + G+++++ + + G+ L + L S Sbjct: 120 -IVENLKNIYALQVEDNHLEHFGIYPGEMVVIQAEHTIEDGN-LYACQIDQGVYGYNLYS 177 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + N + +S+I+ + RIL Sbjct: 178 TENG-FRISNGNGTSHD--LPLSEIKVLGRIL 206 >gi|168178306|ref|ZP_02612970.1| LexA repressor [Clostridium botulinum NCTC 2916] gi|182671611|gb|EDT83585.1| LexA repressor [Clostridium botulinum NCTC 2916] Length = 531 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM+ GD +++ D + G+ K L+ ++ ++ Sbjct: 442 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGNATLKRLLIKKSGAV 500 Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216 LM N Y + I Sbjct: 501 -LMPENKKYKPIEIREEGANIIG 522 >gi|71559074|ref|YP_271801.1| SamA [Salmonella enterica] gi|68166373|gb|AAY88134.1| SamA [Salmonella enterica] Length = 140 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 9/124 (7%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 + FP+ E + + SM + G Sbjct: 14 STAPLFTERCPAGFPSPAAD---YTEEKLDLNAYCIRRPAATFFVRAIGDSMKEMGLHSG 70 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 D+++++ A + GD ++ + G+ K L + I L+ +N YP +++ Sbjct: 71 DLMVVDKAEKPMQGDIVIAETD-GEFTVKRLQLKP--RIALLPINPAYPTLY--PEELQI 125 Query: 215 IARI 218 + Sbjct: 126 FGVV 129 >gi|293604579|ref|ZP_06686982.1| phage repressor [Achromobacter piechaudii ATCC 43553] gi|292816995|gb|EFF76073.1| phage repressor [Achromobacter piechaudii ATCC 43553] Length = 366 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 12/183 (6%) Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R P + ++ T + + P + Sbjct: 169 RIPGLPAPWEGGRTTYQADRDTKLRVATRDSVVANAGPGAPHAENDEFEAVPELADVRLA 228 Query: 111 TGNKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 G+ V RS + A + + SM P+ + G L++ Sbjct: 229 AGDGIENHDETQTGVVQFRRSFLRDVGADSRKSLVVYAKGDSMEPVIKDGAALLVVPNED 288 Query: 165 VN----CGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 + G + G ++ K + + S N YP +E + ++ Sbjct: 289 LTLRDLAGGGVYAINYDGKMIVKTVAKDKLTGRWVARSFNPAYPDIPLENGHPARVLGQV 348 Query: 219 LWA 221 +WA Sbjct: 349 VWA 351 >gi|34541026|ref|NP_905505.1| umuD protein [Porphyromonas gingivalis W83] gi|34397341|gb|AAQ66404.1| umuD protein [Porphyromonas gingivalis W83] Length = 141 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ + + + SM GDIL+++ +++ GD + G+ Sbjct: 38 IDLNHELITHPYSTFYGRVKGNSMEDAHVFDGDILVIDKSLEARDGDMAVCFLD-GEFTL 96 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + I L N YP V + I I+ Sbjct: 97 KTI-RIKSEEILLEPANPDYPTIHVSADNDFVIWGIV 132 >gi|304397691|ref|ZP_07379568.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB] gi|304354863|gb|EFM19233.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB] Length = 139 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM GD+L+++S++ + GD ++ G+ K L Sbjct: 48 PSATYFVRVSGESMIEAGINDGDMLVVDSSLTASHGDIVVAAVD-GEFTVKRLQLHP--C 104 Query: 193 IDLMSLNCCYPVDTVEMSD-IEWIARI 218 + LM +N + ++ D +E + Sbjct: 105 LQLMPMNTKFKPIAIQTEDALEVFGVV 131 >gi|163754986|ref|ZP_02162107.1| putative UmuD/RumA DNA repair protein [Kordia algicida OT-1] gi|161325053|gb|EDP96381.1| putative UmuD/RumA DNA repair protein [Kordia algicida OT-1] Length = 147 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 4/119 (3%) Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPL-YRKGDILILN 160 F + G R + + SM+ D+L+++ Sbjct: 24 EFVASGISAGFPSPADDFRNDRINLSDELINDPNTTYYARVNGESMIDAGLDHDDLLVID 83 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +I G + G+ K L + LM N Y V I I+ Sbjct: 84 KSITPKDGKIAVCCVD-GEFTVKRL-KITDECVYLMPANDNYKPIKVTKDKQLLIWGIV 140 >gi|301166914|emb|CBW26493.1| DNA damage-inducible lexA repressor (SOS regulatory protein) [Bacteriovorax marinus SJ] Length = 207 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 25/211 (11%), Positives = 56/211 (26%), Gaps = 30/211 (14%) Query: 5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K++ + I ++H + T + GL S S+ + L Sbjct: 6 KQKEVLDFITSYWDKHEVAPTQKEIKEAFGLK-------------------SFGSVQRYL 46 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + G ++ + + G G + P+ Sbjct: 47 KYLKDAGHIDSNWNARRGLRPKETKAQSVDENTIEIPLLGD-----VAAGIPIEAIENPD 101 Query: 123 IRSPHNGIYAIQ-TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + SM GDI++ + G ++ G+ Sbjct: 102 NTIAIPTHMIRDSKRYYALNVKGDSMIEDGILDGDIIVCRHQQTASKGQTIIAIVD-GEA 160 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K + +I+L+ N V+ + Sbjct: 161 TVKRYSPLKN-TIELIPANSTMKPIQVDPTQ 190 >gi|226948181|ref|YP_002803272.1| putative LexA repressor [Clostridium botulinum A2 str. Kyoto] gi|226843339|gb|ACO86005.1| putative LexA repressor [Clostridium botulinum A2 str. Kyoto] Length = 531 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM+ GD +++ D + G+ K L+ ++ ++ Sbjct: 442 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGNATLKRLLIKKSGAV 500 Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216 LM N Y + I Sbjct: 501 -LMPENKKYKPIEIREEGANIIG 522 >gi|255067381|ref|ZP_05319236.1| component of DNA polymerase V [Neisseria sicca ATCC 29256] gi|255048351|gb|EET43815.1| component of DNA polymerase V [Neisseria sicca ATCC 29256] Length = 204 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 6/115 (5%) Query: 109 FPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 P G + + A + ++ SML K DI+I++ + Sbjct: 80 IPAGFPSPAEPYIADYLDFNEYLIATPSATFAARSGGYSMLDAGISKDDIMIIDRSKTPK 139 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMSDI-EWIARI 218 GD + + + K L GR +L S N YP + SD I + Sbjct: 140 HGDIV-MADLGNEFTIKRLYKVPGRKPELHSENASGEYPDFVPDESDTWTIIGVV 193 >gi|254518539|ref|ZP_05130595.1| LexA repressor [Clostridium sp. 7_2_43FAA] gi|226912288|gb|EEH97489.1| LexA repressor [Clostridium sp. 7_2_43FAA] Length = 475 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 4/138 (2%) Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP-HNGIYAIQTQDTR 139 + K+ E + + + G E Sbjct: 329 ASNRKEVFEGNDICYNENELEDIPMFNNIAAGTPIEMNDNIEGSFCIPKYWLERGKDTFI 388 Query: 140 HKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 + + SM GD++++ N + + G+ K L G LM Sbjct: 389 LRVKGDSMVEKEICDGDLVVIKKQGTANHNEIVAASLD-GEATLKTLN-LNGNLPKLMPA 446 Query: 199 NCCYPVDTVEMSDIEWIA 216 N Y ++E ++ + Sbjct: 447 NSLYAPISLENKEVNILG 464 >gi|146299727|ref|YP_001194318.1| putative prophage repressor [Flavobacterium johnsoniae UW101] gi|146154145|gb|ABQ04999.1| putative prophage repressor; UmuD; peptidase family S24 [Flavobacterium johnsoniae UW101] Length = 149 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 4/130 (3%) Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL 150 + + F G E+ N + + SM Sbjct: 15 YIPDTSTEVKVPFFDVGISAGFPSPADDFIELSIDLNKELIKHKYTTYFARVKGYSMKNA 74 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD+LI++ +++ + + G+ K + I L++ N Y V Sbjct: 75 GIHDGDLLIIDKSLEPQNNKIAVCQID-GEFTVKRI-KIEKDIIWLIAENEDYKPIKVTP 132 Query: 210 SDIEWIARIL 219 + I I+ Sbjct: 133 ENNFVIWGIV 142 >gi|330952468|gb|EGH52728.1| peptidase S24, S26A and S26B [Pseudomonas syringae Cit 7] Length = 144 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 3/119 (2%) Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILN 160 S P G V E + + ++ K SM+ D+++++ Sbjct: 17 PLYSFQVPAGFASPAVDYIEKHVSLDEMAEVRAPHVYLAKILGDSMVGAGIYDKDLIVVD 76 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G+ ++ D + K L + L S N YP + D I I+ Sbjct: 77 RSRNAEHGEVVVAALNNSDPICKRLY-MMNGVVKLQSENSAYPTRHILEGDNLVIWGIV 134 >gi|254497205|ref|ZP_05110016.1| putative repressor protein C2 [Legionella drancourtii LLAP12] gi|254353588|gb|EET12312.1| putative repressor protein C2 [Legionella drancourtii LLAP12] Length = 207 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 15/199 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ ++ ++ + L+++ G+ N+ + P +I I N Sbjct: 4 IGINLKKLLKKECISENELSKRIGIPQQMINRIITGINQ----NPKLSTITPIANYFNVP 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ D T I + Y + K+ T + + Sbjct: 60 LQELISNSDFDTGNTPIANTLIKIPYVEFKDIEEHDINHAISHSKKFITADLDQN----- 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 D SM P + KG IL+ GD L+K V + ++ Sbjct: 115 ------KDYFATTMNDYSMEPKFSKGTILVFEKEKVPFNGDFCLLKDDENHYVFRQIMIN 168 Query: 189 RGRSIDLMSLNCCYPVDTV 207 + LN T+ Sbjct: 169 STNKKFIKCLNPTSEAFTI 187 >gi|87124247|ref|ZP_01080096.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9917] gi|86167819|gb|EAQ69077.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9917] Length = 147 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V V + + + SML GD+L+++ +++ G ++ Sbjct: 38 ADDYVEV--GIDLNEQLIRHPLSTFFLRVSGESMLGAGIHDGDLLVVDRSLEPRPGRVVV 95 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G K L RG+ + L + + YP + D++ Sbjct: 96 AVLD-GAFTLKRLARHRGQ-LRLEAAHPDYPPLELHRCGDVQI 136 >gi|28870585|ref|NP_793204.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000] gi|28853833|gb|AAO56899.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000] Length = 243 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 13/202 (6%) Query: 29 RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88 + G+ T+ SK E S E++ L E + + +D K Sbjct: 38 KVMGVFKTTQAISKWLNAEAIAEADSMEALCSWLGIRREWLEYGVGPKTNDIHVYSSDPK 97 Query: 89 EIPLLYFPPSGSGG--FFDSGVFPTGNKWNT---VGVPEIRSPHNGIYAIQTQDTRHKTQ 143 I P + G T V S + I + K + Sbjct: 98 NISGSNIVPLPNTSGKVPLISWVQAGAWCETYSNVESESAESWLSCPVPISSSGYALKVR 157 Query: 144 DTSMLP-----LYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMS 197 SM Y G I+ ++ ++V+ GDR++ + + KV + G+ L Sbjct: 158 GDSMTNPGLGRSYPAGCIIFVDPEVEVHTGDRVIARLDRTNEATFKVFVEDAGQQF-LKP 216 Query: 198 LNCCYPVDTVEMSDIEWIARIL 219 +N YP+ + + +++ Sbjct: 217 INPQYPIIKIT-EETHICGKVI 237 >gi|221205602|ref|ZP_03578617.1| prophage transcriptional regulator [Burkholderia multivorans CGD2] gi|221174440|gb|EEE06872.1| prophage transcriptional regulator [Burkholderia multivorans CGD2] Length = 144 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 7/103 (6%) Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + SM P GD L++N ++ + ++ K L Sbjct: 40 WLERLGMKPEYAATIVADGMSMAPRIEDGDSLVVNYKEHTIASGKVYVFTFAYELFIKRL 99 Query: 186 ISRRGRSIDLMSLNCC---YPVDTVEMS---DIEWIARILWAS 222 ++ ++S N YP + D+ IAR++ S Sbjct: 100 YRGTD-AVRVVSDNPDKSRYPDWQIPAERLNDLTVIARVVAVS 141 >gi|254432149|ref|ZP_05045852.1| LexA repressor [Cyanobium sp. PCC 7001] gi|197626602|gb|EDY39161.1| LexA repressor [Cyanobium sp. PCC 7001] Length = 210 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 45/189 (23%), Gaps = 6/189 (3%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I PS + + + + Q +E + L Sbjct: 18 QQELYDWLVDYIGQHRHSPSIRQMMQAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQ 77 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + S G G G T + R + + SM+ Sbjct: 78 LLGAASSGIPVLGSVAAGGLVETFDDVQERLDLAPLLETRG-LFGLTVNGDSMVDAHIAD 136 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD+++L G + K ++ L + N Y + Sbjct: 137 GDVVLLEPVTDPARLRAGTIVSALVPGSGTTLKHFHRNGA-TVTLEAANPAYEPIVLPAE 195 Query: 211 DIEWIARIL 219 + +++ Sbjct: 196 QVTVQGKLV 204 >gi|46579096|ref|YP_009904.1| DNA-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448509|gb|AAS95163.1| DNA-binding protein, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 262 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 65/231 (28%), Gaps = 15/231 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--------E 56 + +++E I T LA + +S + +KR + + + Sbjct: 33 TFDEVFERIKLATNTR--TQVELAEVLDIRQSSISDAKRRNSVPSDWYMKLFEKFGLNPD 90 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K Q + + ++ S F G N + Sbjct: 91 WLKKGSGPMYLRTDQGYEPLDAPVAGLVLEDPARYGDPDAKSSVATVFAMGCAVDENGVS 150 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKP 175 + +A + +M P+ KG + +++ + + G+ + Sbjct: 151 QPLTAIAKLAVPQSFAAPGTQ-IVRVDAGAMEPVIGKGAFVGIDTTQKNIVSGELYGVFM 209 Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + K + L + N +P + + RI+W Q Sbjct: 210 PFEGVAIKRVFLDAANARFILRTENPTHPEQYLPIDQHADRIFGRIVWVLQ 260 >gi|323965383|gb|EGB60839.1| peptidase S24 [Escherichia coli M863] Length = 185 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 11/165 (6%) Query: 58 IFKILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I K + + K+I L+ G + + + Sbjct: 17 IEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEVGYSEVDLST 76 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KP 175 T P + SM+ YR GD++ ++ + GD ++ Sbjct: 77 TETYP-------CPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMH 129 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 TG+ K LI + L +LN +P ++++ + I ++ Sbjct: 130 DTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 173 >gi|253998876|ref|YP_003050939.1| peptidase S24 and S26 domain-containing protein [Methylovorus sp. SIP3-4] gi|253985555|gb|ACT50412.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4] Length = 145 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 9/130 (6%) Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 P + P + + + SM + Sbjct: 10 QGLFHIPLPFYDIPVSAGQSRFPSPAQDYEIAEIDLNKQLITNPPATFLTRVTGDSMTGV 69 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 G IL++N A++ +++ G+++ K L + L+S N Y T+ Sbjct: 70 GIYPGSILVVNRALKPRSSSIVVVLLD-GELMVKRLYKH-AGMVKLLSENPTYAPITLTE 127 Query: 210 SDIEWIARIL 219 I ++ Sbjct: 128 GQELMIWGVV 137 >gi|311279193|ref|YP_003941424.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae SCF1] gi|308748388|gb|ADO48140.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae SCF1] Length = 139 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + KT SM +GD+L+++S+ + + GD ++ Sbjct: 32 DYVE--KRIDLNELLVQHPSATYFVKTSGDSMKDAGIGEGDLLVVDSSRKAHHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 G+ K L+ I L + N Y T+ D ++ + Sbjct: 90 VD-GEFTVKRLLLHP--VIMLKAENSAYAPITIGTEDNLDIFGVV 131 >gi|313200966|ref|YP_004039624.1| peptidase s24 and s26 domain-containing protein [Methylovorus sp. MP688] gi|312440282|gb|ADQ84388.1| peptidase S24 and S26 domain protein [Methylovorus sp. MP688] Length = 145 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 9/130 (6%) Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + P + + + SM + Sbjct: 10 QDLFHIPLPFYDISVSAGQSRFPSPAQDYEIAEIDLNKQLITNPPATFLTRVTGDSMTGV 69 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 G IL++N A++ +++ G+++ K L + L+S N Y T+ Sbjct: 70 GIYPGSILVVNRALKPRSSSIVVVLLD-GELMVKRLYKH-AGMVKLLSENPAYAPITLTE 127 Query: 210 SDIEWIARIL 219 I ++ Sbjct: 128 GQELMIWGVV 137 >gi|329907089|ref|ZP_08274548.1| DNA repair protein [Oxalobacteraceae bacterium IMCC9480] gi|327547097|gb|EGF31972.1| DNA repair protein [Oxalobacteraceae bacterium IMCC9480] Length = 138 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 3/104 (2%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + +T + Q SM+ GD+++++ ++ +L Sbjct: 28 EEYLEKGLDLNQYLVRNKTATFYFRVQGDSMVGARIFDGDMVVVDRSLSPKHRSIVLAVV 87 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L R I+L + N Y + I ++ Sbjct: 88 NAD-YTIKRLHKR-AGVIELRAENPRYAPIQFGDGETLEIWGVV 129 >gi|324114222|gb|EGC08195.1| peptidase S24 [Escherichia fergusonii B253] gi|325497678|gb|EGC95537.1| DNA polymerase V subunit UmuD [Escherichia fergusonii ECD227] Length = 139 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 7/125 (5%) Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 K L FP+ + V + + + + K SM Sbjct: 5 KPAELREIITLPLFSDLVPCGFPSPAA-DYVE--QRIDLNQLVIQHPSATYFVKAAGDSM 61 Query: 148 -LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 GD+L+++SAI + GD ++ G+ K L R S+ L+ +N Y T Sbjct: 62 IEAGIGDGDLLVVDSAITASHGDIVIAAVD-GEFTVKRLQLRP--SVQLVPMNSAYSPIT 118 Query: 207 VEMSD 211 + + Sbjct: 119 LGSEE 123 >gi|283954061|ref|ZP_06371586.1| hypothetical protein C414_000080049 [Campylobacter jejuni subsp. jejuni 414] gi|283794340|gb|EFC33084.1| hypothetical protein C414_000080049 [Campylobacter jejuni subsp. jejuni 414] Length = 224 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 16/131 (12%) Query: 103 FFDSGVFPTGNK--WNTVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGD 155 ++ G N + EI Y I T+ K SM P GD Sbjct: 78 YYTDVAAAAGYGATNNQLEYTEITISKKFAYEALDLPISTKLDIIKIIGDSMEPFVHSGD 137 Query: 156 ILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMS 210 I+ ++ V GD ++ G+I K L+ + I L S+N Y + + Sbjct: 138 IIAVDITKNKLELVKNGDIVV-INLDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVISVE 196 Query: 211 DI---EWIARI 218 I E I + Sbjct: 197 QINHAEIIGVV 207 >gi|229515391|ref|ZP_04404851.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae TMA 21] gi|229348096|gb|EEO13055.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae TMA 21] Length = 198 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 50/191 (26%), Gaps = 13/191 (6%) Query: 41 SKRFGIEGRNRWPSTESIFKILAATNETICQL--LDLPFSDGRTTEKKEKEIPLLYFPPS 98 + + + R T++ + Q S + + + F Sbjct: 1 MLKGRVHLKRRRQGTKAYEYHASILPPETQQALLGQDSGSINEPIKTYAIKPIIPDFMEE 60 Query: 99 GSGGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151 + G+ T + R N + + SM P Sbjct: 61 FAMIPGYRIQVSAGHGALNPENMEPTRYLAFRRKWLNYRGFNEKDLAIVWAKGDSMEPTI 120 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D L+++ A + I ++ K S L+S N Y + + Sbjct: 121 HNNDTLVVHMARNKPQDGHIYIFRNGDELFVKRYQ-NALGSWRLISDNPIYDKLDIPKHE 179 Query: 212 ---IEWIARIL 219 E + +++ Sbjct: 180 QHQFEVVGQVV 190 >gi|153939643|ref|YP_001390261.1| putative LexA repressor [Clostridium botulinum F str. Langeland] gi|152935539|gb|ABS41037.1| LexA repressor [Clostridium botulinum F str. Langeland] gi|295318357|gb|ADF98734.1| LexA repressor [Clostridium botulinum F str. 230613] Length = 531 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 35/162 (21%), Gaps = 4/162 (2%) Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K + E + + G Sbjct: 363 DMDKFEYVDMKHRRSYEFSRGLGSNEEFIVEDQGSKEEYKEDELTKLPVFNDIAAGEPIL 422 Query: 117 TVGVPEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 E + K + SM+ GD +++ D + Sbjct: 423 MNPCVEGEFNIPKYWVRGMKNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AV 481 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G K L+ ++ ++ LM N Y + I Sbjct: 482 NLEGSATLKRLLIKKSGAV-LMPENKKYKPIEIREEGASIIG 522 >gi|113460532|ref|YP_718596.1| LexA repressor [Haemophilus somnus 129PT] gi|170718876|ref|YP_001784049.1| LexA repressor [Haemophilus somnus 2336] gi|122945212|sp|Q0I2G7|LEXA_HAES1 RecName: Full=LexA repressor gi|189046539|sp|B0USF0|LEXA_HAES2 RecName: Full=LexA repressor gi|112822575|gb|ABI24664.1| SOS-response transcriptional repressor, LexA [Haemophilus somnus 129PT] gi|168827005|gb|ACA32376.1| SOS-response transcriptional repressor, LexA [Haemophilus somnus 2336] Length = 210 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 68/220 (30%), Gaps = 39/220 (17%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62 +++++ I R E + P+ ++++ G R P+ E K L Sbjct: 11 QQEVFDLIKRHIESTGMPPTRVEISKELGF-----------------RSPNAAEEHLKAL 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A T ++ + G G G E Sbjct: 54 ARKGVIEIVSGVSRGIRLLTDIEEP-----------ENEGLPLIGRVAAGEPILAEQHIE 102 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + D K SM + GD+L ++S + G ++ + ++ Sbjct: 103 ATYQVDANMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDIRNGQIVVARI-EDEVT 161 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216 K + G + L + N + V+++ +IE IA Sbjct: 162 VKRFERK-GSVVYLHAENEEFEPIVVDLTQQPYFEIEGIA 200 >gi|290475034|ref|YP_003467918.1| putative phage repressor (fragment) [Xenorhabdus bovienii SS-2004] gi|289174351|emb|CBJ81145.1| Putative phage repressor (fragment) [Xenorhabdus bovienii SS-2004] Length = 116 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-----SRR 189 + + SM P ++ GDI++++ + N G+ ++ + K Sbjct: 18 ERAFALRIDGDSMEPDFKAGDIVVIDPEVTPNPGEFVVAASYEREATFKKYRPITINIDG 77 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + +L+ LN YP+ + I I ++ Sbjct: 78 TQHFELIPLNNDYPILDNQRIKITIIGTMV 107 >gi|307608890|emb|CBW98289.1| hypothetical protein LPW_01461 [Legionella pneumophila 130b] Length = 241 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 25/206 (12%) Query: 8 KIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + + ER N LTP+ LARK G+ + + P ++ +I Sbjct: 39 QLAQTLTDLIERENKLTPAALARKLGIPTNKITRILNGDVT----DPKASTLLQIANYFG 94 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 TI QLL L T E + L PT Sbjct: 95 ITIEQLLGLESIVREGTSNIEPLVQSLPI---------YEFSHPTQMTNEWYRWSSN--- 142 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR--TGDIVAKV 184 + P + + +LI+N + + +++K K Sbjct: 143 -----EVDGDYFALAIDTDLYEPTFPQNSLLIVNPDMMPDDRSYIVVKRNDSPQHCSIKK 197 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMS 210 + + L +N PV+ + + Sbjct: 198 YVLEGNQGY-LYPINPKLPVELFDRN 222 >gi|262279851|ref|ZP_06057636.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262260202|gb|EEY78935.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 263 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 40/225 (17%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 LAR G+ P S + G+++ E++ K + L K Sbjct: 24 DLARAVGVKPPSVSDWL----SGKSKKMEGENLLKAAKYLKVSAAWLATGVGEPTEEHNK 79 Query: 86 KEKE------------------------------IPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + ++ P S + + Sbjct: 80 EAAKVLSDAQFKIIDIEAFKKKYNISESDEAVLFSNIVEKPFMPSSKRWVPVKAYSKMGM 139 Query: 116 NTVGVPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + V + G I ++ K SM P R G ++ + + + Sbjct: 140 DGYFVDMGFEGNGGDGYIPTHTAGSKAYAVKGTGDSMFPAIRNGWYVVCDPDAEPVPMEF 199 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + + + G K I + + L+++N T M ++E I Sbjct: 200 VQVCLKDGRCTIKEFIGIQNDVLSLIAVNGG-ERLTFNMDEVESI 243 >gi|242277598|ref|YP_002989727.1| phage repressor [Desulfovibrio salexigens DSM 2638] gi|242120492|gb|ACS78188.1| putative phage repressor [Desulfovibrio salexigens DSM 2638] Length = 228 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 19/226 (8%) Query: 11 EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E+++R+ + T LA + +S + +KR E K+ Sbjct: 7 ESLERIKKATGTRTQVQLAEILNIRQSSISDAKRRSSIP------AEWFIKLYRTHGLNP 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFPTGNKWN---TVGVPE 122 L D K + + + G + + V P+ Sbjct: 61 EWLSDGIEPVYLKPGKGKIAADQILSETTAQYGQVQSRGRIVPVSSMAGEDAGAEVWKPQ 120 Query: 123 IRSPHN-GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDI 180 S + ++ K + +SM P R+ + ++ S ++ GD I + Sbjct: 121 QVSELSIPETYYRSSLVVLKAEGSSMEPSVRRDAFVGIDDSQKRLMAGDIYAIHVPYQGV 180 Query: 181 VAKVLISRR-GRSIDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223 V + + L + +P + + + + R++W Q Sbjct: 181 VIRRVFFDPENSRFILRPDDSQHPEQYIPVENHEKHVVGRVVWVMQ 226 >gi|215486411|ref|YP_002328842.1| DNA polymerase V subunit UmuD [Escherichia coli O127:H6 str. E2348/69] gi|215264483|emb|CAS08850.1| DNA polymerase V, subunit D [Escherichia coli O127:H6 str. E2348/69] Length = 139 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIIIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-DEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132 >gi|269837733|ref|YP_003319961.1| SOS-response transcriptional repressor, LexA [Sphaerobacter thermophilus DSM 20745] gi|269786996|gb|ACZ39139.1| SOS-response transcriptional repressor, LexA [Sphaerobacter thermophilus DSM 20745] Length = 213 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 57/218 (26%), Gaps = 24/218 (11%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + E I+R E + P+ + R + TS L Sbjct: 9 QQMMLEYIERFLEENTYPPTIREIQRDLNISSTSVVDY-------------------NLN 49 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + S G + + + P + + I Sbjct: 50 ILEQRNLIRRNRNISRGIELVNRPVPVRNIVQVPVIGQIAAGEPIPVLDDIVIDETTETI 109 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDIV 181 + I + + + SM+ GDI+IL G+ + + + Sbjct: 110 NISSDLIGSRTDGLFALRVKGMSMIDALINDGDIVILRHQQTCENGETVAVWLRAEKETT 169 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K G I L N ++E +++ Sbjct: 170 LKRFY-HEGSRIRLQPANATMSPIYTTPDNVEIQGKLV 206 >gi|308186721|ref|YP_003930852.1| UmuD protein [Pantoea vagans C9-1] gi|308057231|gb|ADO09403.1| UmuD protein [Pantoea vagans C9-1] Length = 139 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM GD+L+++S++ + GD ++ G+ K L Sbjct: 48 PSATYFVRVSGESMIEAGINDGDMLVVDSSLTASHGDIVVAAVD-GEFTVKRLQLHP--C 104 Query: 193 IDLMSLNCCYPVDTVEMSD-IEWIARI 218 + LM +N + ++ D +E + Sbjct: 105 LQLMPMNTKFKPIAIQTEDALEVFGVV 131 >gi|253999315|ref|YP_003051378.1| peptidase S24 and S26 domain-containing protein [Methylovorus sp. SIP3-4] gi|253985994|gb|ACT50851.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4] Length = 148 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 11/141 (7%) Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139 +PP + FP+ + V + S + + T Sbjct: 9 QPANVTAIMAHHPGVYPPMPLYDNPVAAGFPSPAA-DHVE--DRLSADDYLVGNPTATYF 65 Query: 140 HKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 + + SM+ GD+L+++ +I + G +++ G+ K L L+ Sbjct: 66 VRVKGDSMIDAGIFDGDVLVVDRSITPSIG-HVVLAELDGEFTVKYL-----GRGQLLPA 119 Query: 199 NCCYPVDTVEMSD-IEWIARI 218 N Y + +E + + Sbjct: 120 NPAYQPIKFKDGQTVEIVGVV 140 >gi|15081541|ref|NP_150054.1| transcription regulator phage-related [Clostridium perfringens str. 13] gi|15076774|dbj|BAB62499.1| probable transcription regulator phage-related [Clostridium perfringens str. 13] Length = 367 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 10/180 (5%) Query: 41 SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 SK+ T + KI+ + I L + + KE Sbjct: 183 SKKRTDRMYEELFRTLNREKIINDSILKIKNLSKENKLELLKEKAKENNYEEFTKLKILG 242 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + + +T+ +P N Y + SM ++ +I+ Sbjct: 243 KISAGIPHYACEDLIDTIYLPNQFFKPNFEY------FGLRIFGDSMNKMFDNDFTIIVR 296 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218 GD ++ + K + + I L+ N + + + + + + Sbjct: 297 KTNSFINGDIVVAII-GDEATCKEI-KQVENYIYLIPHSTNPEHQIQKYKADQVMILGVV 354 Score = 40.1 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 E + ++ LT LA+K G+ ++ + + IE ++ K++ Sbjct: 11 ENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNI--FVLITLSKLMNC 62 >gi|331666049|ref|ZP_08366943.1| repressor protein phage e14 [Escherichia coli TA143] gi|331057100|gb|EGI29094.1| repressor protein phage e14 [Escherichia coli TA143] Length = 185 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 8/177 (4%) Query: 46 IEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFF 104 +G + I + + L + T + + P S Sbjct: 2 GDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQA 61 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 + ++ V + + + SM+ YR GD++ ++ + Sbjct: 62 GAWK---EVGYSEVDL-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVP 117 Query: 165 VNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 GD ++ TG+ K LI + L +LN +P ++++ + I ++ Sbjct: 118 ACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 173 >gi|261339962|ref|ZP_05967820.1| UmuD protein [Enterobacter cancerogenus ATCC 35316] gi|288317875|gb|EFC56813.1| UmuD protein [Enterobacter cancerogenus ATCC 35316] Length = 139 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + + K SM GD+L+++S++ GD ++ Sbjct: 32 DYVE--QRIDLNELLVSHPSSTYFVKAAGDSMIEAGIGHGDLLVVDSSLNAEHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 G+ K L R ++ L +N Y V D ++ + Sbjct: 90 -VEGEFTVKRLQLRP--TVQLNPMNSAYSPIIVGSEDTLDIFGVV 131 >gi|330959810|gb|EGH60070.1| putative UV resistance protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 143 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + P + A + + SM P G LI++ A GD ++ Sbjct: 35 DHYEPPISLDELVELRA--PHVWLGEAEGMSMQPCGIVSGSRLIIDRARPPKVGDVVV-A 91 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 V K L + S L S N YP +IE + W+ Sbjct: 92 YIFNQPVVKRLDKSQNGSWVLSSDNPKYPPIE-GTEEIEVFGVVTWS 137 >gi|315124225|ref|YP_004066229.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017947|gb|ADT66040.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 208 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 24/187 (12%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + P + + + E + KI N ++ + R + + Sbjct: 29 IKPNTLSTWRTRNTIP------YELLLKISKEQNISLDSIFFGK---MRINDDNLQLRYY 79 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT--QDTRHKTQDTSMLPL 150 + G +S + + + + + K SM P Sbjct: 80 TDVAAAAGYGAINSKL-------EYTEIVISKKFACEALGLPPLTRLDIIKVIGDSMEPF 132 Query: 151 YRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVD 205 GD++ ++ + V GD ++ G+I K L+ + I L S+N Y Sbjct: 133 IHNGDVIAVDVSKNKLELVKNGDIVV-INLDGEIYCKKLLKQPFVNEIVLSSMNSFYKDI 191 Query: 206 TVEMSDI 212 V + I Sbjct: 192 VVNIDQI 198 >gi|227522664|ref|ZP_03952713.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227090184|gb|EEI25496.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 155 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 5/114 (4%) Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 +GV G V R N + D K SM P + Sbjct: 30 VVELPLEILNIAGVASAGTGEELVD---ERDQINYRGELPKFDFAIKINGDSMEPRFHDQ 86 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 + ++ A + G ++ G K + ++ L+SLN Y V+ Sbjct: 87 QVALVKKAFEAENGQIVIAYVD-GRSYIKQF-EQTEQTCRLVSLNRKYAPIEVQ 138 >gi|116074633|ref|ZP_01471894.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9916] gi|116067855|gb|EAU73608.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9916] Length = 127 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V V + + + + SM+ GD+L+++ ++ G ++ Sbjct: 18 ADDYVDV--GIDLNEQLIRHPSSTFFLRVSGDSMIGAGIHDGDLLVVDRSLNPRPGRIVV 75 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G K L+ R + L + N YP + +D++ Sbjct: 76 AILD-GAFTLKRLMRD-QRGLHLEAANPAYPCLDLHHCTDVQI 116 >gi|206578336|ref|YP_002238664.1| protein UmuD homolog [Klebsiella pneumoniae 342] gi|206567394|gb|ACI09170.1| protein UmuD homolog [Klebsiella pneumoniae 342] Length = 160 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 13/155 (8%) Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I + + T + T + + + L + GF + + Sbjct: 2 ICRPVKTTVYKNSVNVSEFIMQFYTPVELRQIMLLPLYSDLVQCGFPSPAQDYVEQRIDL 61 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 + + K SM +GD+L+++S+ GD ++ Sbjct: 62 NELLVNH---------PSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAAVD 112 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G+ K L + L +N Y V D Sbjct: 113 -GEFTVKKLQLHP--RVQLNPMNPAYSPIVVGSED 144 >gi|300813616|ref|ZP_07093945.1| putative LexA repressor [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512273|gb|EFK39444.1| putative LexA repressor [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 98 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 5/90 (5%) Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + K SM+ + GD +I+ GD++L + K + Sbjct: 7 FVRDRDLFILKVSGESMINVGILDGDYVIIQRTNYAENGDKVLALIN-DEATIKTFYKEK 65 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L N V+ D++ + I+ Sbjct: 66 DG-FRLQPENDFMKPIYVK--DLKILGTIV 92 >gi|218296748|ref|ZP_03497454.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23] gi|218242837|gb|EED09371.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23] Length = 233 Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 35/216 (16%) Query: 17 AERHNL-TPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAATNETICQLL 73 + + +R+ G+ + R G P+ +++ + A + + +L+ Sbjct: 33 MREWGINSLEEFSRRVGIPRGTIYYLVRGRQTKAGTWVKPNIDTLVALSKALDVPLHELV 92 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT----GNKWNTVGVPEIRSPHNG 129 P + + P G + R+ Sbjct: 93 YRLE------------------PSAPGYEYRFEHHIPILGYVGGGPAQLEEIGDRTVPVR 134 Query: 130 IYAIQTQDTRHKTQDTSMLPL---YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + K + SM GDI+I+N+ + + G ++ + V K + Sbjct: 135 VKGSASHLVAFKVRGNSMCAGRRPVCDGDIIIVNTQDKGHPGAIVVARLDEDSYVVKKM- 193 Query: 187 SRRGRSIDLMSLNCCYP--VDTVEMSDI-EWIARIL 219 + L S N P + + + E + R++ Sbjct: 194 -GPDGT--LYSTNPEEPNGPPVIPVDQVAEIVGRVV 226 >gi|146311865|ref|YP_001176939.1| DNA polymerase V subunit UmuD [Enterobacter sp. 638] gi|145318741|gb|ABP60888.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Enterobacter sp. 638] Length = 139 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 6/97 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM GD+L+++S+ GD ++ Sbjct: 32 DYVE--QRIDLNELLVQHPSATYFVKAAGDSMIEAGISDGDLLVVDSSRTAEHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD K L R + L +N Y + D Sbjct: 90 -VEGDFTVKRLQLRPN--VQLNPMNSAYSPIIIGSED 123 >gi|290476944|ref|YP_003469855.1| hypothetical protein XBJ1_3975 [Xenorhabdus bovienii SS-2004] gi|289176288|emb|CBJ83093.1| hypothetical protein XBJ1_3975 [Xenorhabdus bovienii SS-2004] Length = 247 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 21/237 (8%) Query: 3 SFSHKKIWEAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + + + +H + + A G+ P+ ++ I Sbjct: 1 METKDIRRNNLRTLMTQHVRQGTSKTAFAELIGIPPSQLSQLTSDNAVRNIGDIIARRIE 60 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY-----FPPSGSGGFFDSGVFPTGNK 114 L + L + + +++ E L F G Sbjct: 61 VNLELPIGWLDIPQQLIDNRDNSHKERNNENYHLQNISHKVTDLSYRIEQLDVEFSCGGG 120 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHK---------TQDTSMLPLYRKGDILILNSAIQV 165 P+I + + SML G++++L+ + Sbjct: 121 RLNSDYPDIVRSIEVDPEYAKRMFGCRPSTSLKLTTALGDSMLGTINPGELVVLDITVSR 180 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219 D + + K L + I ++S N Y ++ ++ Sbjct: 181 FMSDGIYAFTYGDGMHIKRLQLLKD-RIVVISDNQIYDRWEIDSENESKFHIHGFVV 236 >gi|326562630|gb|EGE12935.1| peptidase S24-like protein [Moraxella catarrhalis 7169] Length = 204 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/199 (10%), Positives = 53/199 (26%), Gaps = 16/199 (8%) Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + + + + R + + + L + + + Sbjct: 3 IRRYSKG--QAKPRNDKMKLLAQCLGVPITWLDYGEGEMTKNNYKLAPITEWDDSTPLDD 60 Query: 98 SGSGGFFD-SGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149 + F F G T + + + + + +D SM+P Sbjct: 61 DEAEIPFYKDIAFACGYGAVNDDVTHETRKLRMGKRTLSNLGVMPENAFAVTARDDSMMP 120 Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDT-- 206 + GD + ++ + R+ + K L + ++S N +P Sbjct: 121 YVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVAT 180 Query: 207 ---VEMSDIEWIARILWAS 222 + + E + + S Sbjct: 181 KQQISDGEFEVLGWVWSVS 199 >gi|330950358|gb|EGH50618.1| peptidase [Pseudomonas syringae Cit 7] Length = 147 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 10/135 (7%) Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPHNGI-YAIQTQDTRHKTQDTSM-- 147 + P+ + G V P ++ Y + + + SM Sbjct: 8 MIHQPAQMYRYPVVSWVAAGGWSEAVEPYAPGAADEYDVSDYQAKGPAFWLEVKGDSMTA 67 Query: 148 --LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 P +G +++++ V G ++ + + K L+ G L LN YP Sbjct: 68 PTAPSIPEGSQILVDTRADVRPGKLVIAKLAGSNEATFKKLVEDGGVRY-LKPLNSAYPT 126 Query: 205 DTVEMSDIEWIARIL 219 D I ++ Sbjct: 127 VQC-ADDCRIIGVVV 140 >gi|300088463|ref|YP_003758985.1| LexA family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528196|gb|ADJ26664.1| transcriptional repressor, LexA family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 217 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 24/216 (11%) Query: 8 KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+ E I + + PS + + TS +E + + + + Sbjct: 15 KMLEYIRNYFNDYGIPPSIRDIVSGCNISSTSVADYNLRHLERAGYIRRHKDVSRGIELL 74 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L +P + + + P + V VPE Sbjct: 75 GSEGRPLQLVPLLGKIAAGRPIPVPDVETWKPELAA--------------ENVDVPETMI 120 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLY-RKGDILILNSAIQVNCGDRL-LIKPRTGDIVAK 183 H+ K + SM+ GDI+I+ +A V G + + K Sbjct: 121 GHH------KNLFALKVRGNSMIDALVNDGDIVIMQAADDVENGQMAAVWLKNEKEATLK 174 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + L N ++ R++ Sbjct: 175 KVFREANGKVRLQPANALMTPMYENAKNVVIQGRVI 210 >gi|260867589|ref|YP_003233991.1| DNA polymerase V subunit D [Escherichia coli O111:H- str. 11128] gi|257763945|dbj|BAI35440.1| DNA polymerase V subunit D [Escherichia coli O111:H- str. 11128] gi|323179304|gb|EFZ64874.1| protein umuD [Escherichia coli 1180] Length = 139 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 G+ K L R ++ L+ +N Y T+ D ++ ++ Sbjct: 90 VD-GEFTVKKLQLRP--TVQLIPMNSAYSSITISSEDTLDVFGVVI 132 >gi|206579793|ref|YP_002239124.1| protein UmuD homolog [Klebsiella pneumoniae 342] gi|288936023|ref|YP_003440082.1| peptidase S24/S26A/S26B, conserved region [Klebsiella variicola At-22] gi|290512829|ref|ZP_06552194.1| DNA polymerase V [Klebsiella sp. 1_1_55] gi|206568851|gb|ACI10627.1| protein UmuD homolog [Klebsiella pneumoniae 342] gi|288890732|gb|ADC59050.1| Peptidase S24/S26A/S26B, conserved region [Klebsiella variicola At-22] gi|289774712|gb|EFD82715.1| DNA polymerase V [Klebsiella sp. 1_1_55] Length = 139 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM GD+L+++ ++ GD ++ Sbjct: 32 DYVE--DRLDLNKLLIKHPSATYFIKVSGESMRDAGISDGDLLVVDRSLSAVHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 G+ K L + + L+ N Y + ++E ++ Sbjct: 90 I-AGEFTVKELRTHP--FLQLVPHNRDYASISFHNAEELEIFGVVI 132 >gi|323957141|gb|EGB52866.1| peptidase S24 [Escherichia coli H263] gi|324112045|gb|EGC06023.1| peptidase S24 [Escherichia fergusonii B253] gi|332341602|gb|AEE54936.1| e14 phage repressor protein [Escherichia coli UMNK88] Length = 185 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 8/177 (4%) Query: 46 IEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFF 104 +G + I + + L + T + + P S Sbjct: 2 GDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQA 61 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 + ++ V + + + SM+ YR GD++ ++ + Sbjct: 62 GAWK---EVGYSEVDL-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVP 117 Query: 165 VNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 GD ++ TG+ K LI + L +LN +P ++++ + I ++ Sbjct: 118 ACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 173 >gi|58616539|ref|YP_195669.1| DNA repair protein [Azoarcus sp. EbN1] gi|56316002|emb|CAI10645.1| DNA repair protein [Aromatoleum aromaticum EbN1] Length = 158 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ + + SM GDIL+++ ++ G ++I G+ + Sbjct: 55 LDINDYLVRNPVSTFYFPVKGDSMQGAQVFDGDILVVDRSVMPAHG-HVVIAFVNGERLV 113 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K R G I L++ N YP + I ++ Sbjct: 114 KRFHRR-GDRIALLAENPGYPPLELTEGSELVIWGVV 149 >gi|84391257|ref|ZP_00991588.1| Putative repressor protein of prophage [Vibrio splendidus 12B01] gi|84376546|gb|EAP93424.1| Putative repressor protein of prophage [Vibrio splendidus 12B01] Length = 240 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 55/235 (23%), Gaps = 21/235 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSG----LARKA--GLDPTSFNKSKRFGIEGRNRWPS-T 55 ++ ++ ++ + G L + + K + S Sbjct: 1 MDKQQQFTLRLNEACDQAGIPQRGRSAYLQKILPFKISTAGIRKWLVGEAVPDTKKLSDI 60 Query: 56 ESIFKIL--AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 S+ ++ ++ L + L + G + Sbjct: 61 ASLLEVSVEHLLGNVALKVNVLTEGKQDQAFFEHAMKHLPNAQFIDTSGLKAIPILSQVQ 120 Query: 114 KWNT----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQ 164 N + + K SM P G I+++ Sbjct: 121 AGNWQTVIIDQDTEFKWQTVAANTSSNAFAMKVSGNSMTNPHGSPSIPAGSIVVVEPCNC 180 Query: 165 VNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + G ++ + K L + L+ LN Y + + + + Sbjct: 181 PDNGKIVVATLNDAPEATIKKLEIDGPQKF-LVPLNPKYDPIPINGN-CRIVGYV 233 >gi|213023499|ref|ZP_03337946.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 99 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + + K SM GD+L+++S+ + GD ++ G+ K L Sbjct: 1 NELLVSHPSSTYFVKATGDSMIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRL 59 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 R ++ L+ +N Y V D ++ + Sbjct: 60 QLRP--TVQLIPMNGAYRPIPVGSEDTLDIFGVV 91 >gi|170759678|ref|YP_001786294.1| putative LexA repressor [Clostridium botulinum A3 str. Loch Maree] gi|169406667|gb|ACA55078.1| LexA repressor [Clostridium botulinum A3 str. Loch Maree] Length = 535 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM+ GD +++ D + G K L+ ++ ++ Sbjct: 446 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 504 Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216 LM N Y + I Sbjct: 505 -LMPENKKYKPIEIREEGASIIG 526 >gi|329113614|ref|ZP_08242393.1| Phage Repressor [Acetobacter pomorum DM001] gi|326697060|gb|EGE48722.1| Phage Repressor [Acetobacter pomorum DM001] Length = 264 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 67/214 (31%), Gaps = 28/214 (13%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 ++ K+G+ ++ N R + K+ A N ++ LL +D + Sbjct: 51 RAVSEKSGIPLSTLNTYIGG------RDMRVSAAAKLAFACNVSLSWLLLGQDADEPLLK 104 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW----NTVGVPE----IRSPHNGIYAIQTQ 136 + L + + D + + PE + G + Sbjct: 105 INLPQGQSLP-SQANDVAYIDYYNIAASAGYGVCADAGVRPEKVAVSLAFLKGDLGLDPN 163 Query: 137 DT-RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 +T SM P R GD L++++ + ++ G ++ K L S I + Sbjct: 164 YVLMLETSGDSMEPTLRSGDRLLVDTRRRHILDGIHVLVVN-GGLLVKRLSSEPSGKICI 222 Query: 196 MSLNCCYPVDTVEMSD-----------IEWIARI 218 S N Y + S I I R+ Sbjct: 223 ASDNHLYKEFLTDASRFRWGEPDGDDAITIIGRV 256 >gi|209963569|ref|YP_002296484.1| DNA-binding protein (HTH domain), putative [Rhodospirillum centenum SW] gi|209957035|gb|ACI97671.1| DNA-binding protein (HTH domain), putative [Rhodospirillum centenum SW] Length = 203 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 58/215 (26%), Gaps = 30/215 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ S LA K GL +K + R + + K+ A Sbjct: 11 SRLRSLRTARGMSLSALAAKVGLSKGELSKLETGVRPLRP-----DHVAKLARAFEIAPS 65 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L+ + + +PL P G V P Sbjct: 66 DLVGEASALRAMIAPEPATLPLY---DGRDLARVGDAAEPIG----RVDAPAQLRSVPDA 118 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 YA D S P G +L ++ GD ++ + + L Sbjct: 119 YA-------ITINDLSNAPALMPGVVLHVHPGRAPALGDLVVNRVSWSPLAF-YLRQDDD 170 Query: 191 RSID---LMSLNCCYPVDTVEMSDIEWIARI--LW 220 L + + ++E + ++ +W Sbjct: 171 GRFYGLTLSR-----RRVELSLEEVERLHKVAGIW 200 >gi|172046050|sp|Q65UK9|LEXA_MANSM RecName: Full=LexA repressor Length = 213 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 31/210 (14%) Query: 6 HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62 ++++ + E + P + ++R+ G R P+ E K L Sbjct: 11 QQEVFNFLKHHIETTGMPPTRAEISRELGF-----------------RSPNAAEEYLKAL 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + T+ + G G G E Sbjct: 54 ARKG--------VVEILSGTSRGIRLLVDTEESANDEDAGLPLIGRVAAGEPILAEQHIE 105 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + D K SM + GD+L ++S V G ++ + ++ Sbjct: 106 GTYKVDADMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQVIVARI-EDEVT 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K L + G + L + N + V + + Sbjct: 165 VKRLERK-GDVVYLHAENEEFKPIVVNLKE 193 >gi|323652315|gb|ADX98396.1| phage repressor protein, putative [Campylobacter jejuni] Length = 115 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 3/109 (2%) Query: 112 GNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G + + E+ + + + SM PL + G I +++ Sbjct: 3 GGINDLIDCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSI 62 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K ++ + I L SLN Y + D I ++ Sbjct: 63 CV-INARDGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 109 >gi|289667313|ref|ZP_06488388.1| LexA repressor [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 112 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 3/90 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + D + Q SM+ GD++ ++ + + G ++ + G+I Sbjct: 9 ERQLWLDRALFSLRPDYLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARVD-GEI 67 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K L I L+ N + V Sbjct: 68 TIKRLER-GAERIRLLPRNRAHAPIVVAAD 96 >gi|87120542|ref|ZP_01076436.1| UmuD protein; UmuD' protein [Marinomonas sp. MED121] gi|86164185|gb|EAQ65456.1| UmuD protein; UmuD' protein [Marinomonas sp. MED121] Length = 149 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 6/129 (4%) Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSM-LPLY 151 + + F G E + + Q SM Sbjct: 14 FIDANSVQIPFYVEPVSAGFPSPADDFIERKLDLNALCIKHPEATFFVRVQGESMSEAGI 73 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS- 210 D+LI++ ++ GD ++ G++ K L+ + + L N Y + Sbjct: 74 YNHDVLIVDRSLTARHGDFVIACI-HGEMTVKELVLKPN--VALRPKNKAYAAIAITEES 130 Query: 211 DIEWIARIL 219 +++ ++ Sbjct: 131 ELDVFGVVI 139 >gi|167586258|ref|ZP_02378646.1| putative prophage repressor [Burkholderia ubonensis Bu] Length = 201 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 30/197 (15%) Query: 3 SFSHKKIW---EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + +++ I + +R L+ + LARK G+ P + ++ E P ++ Sbjct: 1 METSQRLVLMVARIRALMQRQGLSDADLARKTGVSPATLSRVLSMATE----DPRISTVM 56 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 I A T + L S+ +L + ++ TV Sbjct: 57 AIADALGTT---VGYLLQSERAYPIPILGWDEMLGYARGVYDVARNTRWL-------TVD 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P G +A +T+ SM P +R+G I+I+ I ++ G+ Sbjct: 107 TP----RRPGTFAARTK--------PSMAPRFREGSIVIVEPGIAFRDAQVVVAAIDGGE 154 Query: 180 IVAKVLISRRGRSIDLM 196 + + + G ++ L Sbjct: 155 PTLRRVT-QDGEAVWLK 170 >gi|15988316|pdb|1JHE|A Chain A, Lexa L89p Q92w E152a K156a Mutant gi|15988317|pdb|1JHE|B Chain B, Lexa L89p Q92w E152a K156a Mutant Length = 135 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 3/116 (2%) Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155 G G G E + D + SM + GD Sbjct: 3 QEEEEGLPLVGRVAAGEPLPAQWHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGD 62 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 +L ++ V G ++ + + L + G ++L+ N + V++ Sbjct: 63 LLAVHKTQDVRNGQVVVARID-DAVTVARLKKQ-GNKVELLPENSEFKPIVVDLRQ 116 >gi|320538859|ref|ZP_08038535.1| DNA-binding transcriptional repressor of SOS regulon [Serratia symbiotica str. Tucson] gi|320031019|gb|EFW13022.1| DNA-binding transcriptional repressor of SOS regulon [Serratia symbiotica str. Tucson] Length = 202 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + ++++E I + + P + +A + G R P+ Sbjct: 1 MKALTTRQQEVYELIRDHILQTGMPPTRAEIAMRLGF-----------------RSPNA- 42 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + G G G Sbjct: 43 -------------AEEHLKALARKGVIEIISGASRGIRLLMEDEEGLPLIGGVAAGEPLL 89 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L + V G ++ + Sbjct: 90 AQQHIEGHYKVDPSLFKPNADFLLRVIGMSMRDIGILDGDLLAVYKTQDVRNGQVIVARI 149 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L + G ++L+ N + V++ Sbjct: 150 -EDEVTVKRL-KKSGNMVELLPENNEFQPIVVDLRQ 183 >gi|297627274|ref|YP_003689037.1| Prophage repressor precursor (peptidase family S24) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923039|emb|CBL57622.1| Prophage repressor precursor (Peptidase family S24) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 144 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 4/101 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + SM+ GD L+++ ++ GD ++ Sbjct: 38 YFDGDVDLNEHLLVNRPASFIVRVAGDSMIGAGIFDGDELVVDRSLDPVDGDVVIAVVD- 96 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ K L +L N YPV +D+ + Sbjct: 97 NELTVKTLH-LGESGPELRPENPAYPVIR-PATDLRVWGVV 135 >gi|296122490|ref|YP_003630268.1| LexA repressor [Planctomyces limnophilus DSM 3776] gi|296014830|gb|ADG68069.1| LexA repressor [Planctomyces limnophilus DSM 3776] Length = 198 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 34/154 (22%), Gaps = 5/154 (3%) Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ +I + +E + + G Sbjct: 28 TVREIGTHFGIRSPNGVMCHLKALERKGLISRESHMSRAIQLADSPASRMTLPMAGQIAA 87 Query: 117 TVGVPEIRSPHNGIYA---IQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + V + ++ + + SM +GD +++ G+ ++ Sbjct: 88 GIPVLAEQQEERVDFSHLFDSEDHFCLRVKGDSMIEDQIAEGDYVVIKRQADARDGEIVV 147 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 D K I L N Sbjct: 148 ALVDGVDATLKRFYREP-TRIRLEPANSTMKPIY 180 >gi|99080630|ref|YP_612784.1| putative phage repressor [Ruegeria sp. TM1040] gi|99036910|gb|ABF63522.1| HTH-type transcriptional regulator prtR [Ruegeria sp. TM1040] Length = 238 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 70/214 (32%), Gaps = 29/214 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 EA+DR + L+ LA KAG+ K ++ G+++ + E KI A + Sbjct: 36 EALDRAQDATGLSMRKLADKAGVSYEQLKKVRQ----GKSQTTNAEDALKIATAVGVSF- 90 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 I + +G+ G+ V P PH Sbjct: 91 ------EQFMSGEFDASPTISIAGKVGAGAQVPVFDAYEK-GDGP-QVECPPGIGPHG-- 140 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-----LIKPRTGDIVAKVL 185 + + SM P+Y GD+L + + D + + + G K + Sbjct: 141 ------VVAVEVEGDSMEPVYSAGDLLFYSRNGHDSVPDDVIGYKCVCEDADGMGWVKQV 194 Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+SLN ++W AR+ Sbjct: 195 KAGDEPGLFHLISLNPTGANMW--NVRLKWAARV 226 >gi|284040423|ref|YP_003390353.1| phage repressor [Spirosoma linguale DSM 74] gi|283819716|gb|ADB41554.1| putative phage repressor [Spirosoma linguale DSM 74] Length = 237 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 56/221 (25%), Gaps = 16/221 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + ++ + +T +A++ G +P+ F + PS ++I +LA + Sbjct: 15 IQDRLKQVFDALGITIYQIAKELGENPSKFYNILNGRAK-----PSYDTIMSLLACYPQI 69 Query: 69 ICQL--LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + F Sbjct: 70 SADYLIRGILPILNSPQANARLLSADDDTIEVPFIPVKFYATFVESFAEGIHATDVDSFR 129 Query: 127 HNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIV 181 + SM P G ++ + G + V Sbjct: 130 VRKPIVKGHKNSVVLEISGNSMSPQLAHGAKVLAIPVSENNWEYQSG-GVYAVMYRDYFV 188 Query: 182 AKVLI---SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + + L S N TV + DI + +I+ Sbjct: 189 VKRIRDNELLTKKYLTLHSDNPNGGNVTVPLQDIRGLWKIV 229 >gi|146351269|ref|YP_001210496.1| putative UmuD-like protein [Arthrobacter nitroguajacolicus] gi|146218833|emb|CAL09904.1| putative UmuD-like protein [Arthrobacter nitroguajacolicus] Length = 143 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 4/98 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + T + SM GD LI+N A++ G ++ Sbjct: 37 YFDGRIDLNEYLIKDVTSTFIVRVTGQSMEQAGISDGDELIVNRALEPKDGSVVIAVLD- 95 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G++ K L + L + N +P V S++ Sbjct: 96 GELTIKRL-RITASGVVLQADNPGFPDIKVPALSELTI 132 >gi|29691170|gb|AAO89163.1| RulA [Pseudomonas cichorii] Length = 141 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 8/129 (6%) Query: 95 FPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150 SG F + P G + + + A K SM Sbjct: 9 LSESGKVIPFYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAK 66 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 +++++ + G ++ + + K+L+ + G + L S N YP + Sbjct: 67 IFHDSLVVVDRSRTPVSGSIVIAALN-NEPLCKILVIQ-GEHVVLKSANPAYPPRHILEG 124 Query: 211 DIEWIARIL 219 + I ++ Sbjct: 125 EDLSIWGVV 133 >gi|323700030|ref|ZP_08111942.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio sp. ND132] gi|323459962|gb|EGB15827.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio desulfuricans ND132] Length = 153 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 3/104 (2%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + + SM+ GD+L+++ ++ G+ ++I Sbjct: 45 EEYLEKRLDLNEHLVTRPEATYFVRVSGDSMIGAGIHHGDLLVVDRSLDPRPGN-VVIAL 103 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L + ++L N Y + I ++ Sbjct: 104 VEGEFTVKRL-RKSPLGLELAPENPEYVAILLSEETDFLIWGVV 146 >gi|148807316|gb|ABR13390.1| hypothetical protein [Pseudomonas aeruginosa] Length = 143 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 5/108 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + I A + SM+ GD+++++ + + GD ++ Sbjct: 33 DHLEREISLDEILQIRA--PHTYLVRAGGDSMIRAGIHDGDLMVVDRSREAEPGDIVIAA 90 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G+ K L G + L + N Y + D + ++ S Sbjct: 91 VN-GEPTVKRLAKD-GSQVVLRAENPRYAPRYILEGDELLVWGVVRYS 136 >gi|78357989|ref|YP_389438.1| DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220394|gb|ABB39743.1| DNA-binding protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 231 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 61/237 (25%), Gaps = 24/237 (10%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +++E I T LA + +S + +KR + K+ Sbjct: 1 MSTFDEVFERIKMATNTR--TQVELAEVLDIRQSSISDAKRRNSVPS------DWYMKLF 52 Query: 63 AATNETICQLLDLPFSDG------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 L + ++ P + S + Sbjct: 53 EKFGLNPDWLKMGSGPMYLRTEQGYQPVDGPAAGQVFEDPAKYGDPDAKSTVVTVYAMHD 112 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGD 169 + + + TSM PL KG + L++ + + G+ Sbjct: 113 DQAAEEELPHKSLSKLSVPQSFAGAAMQVFRVDATSMEPLIAKGAFVCLDTQQKSIISGE 172 Query: 170 RLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIE--WIARILWASQ 223 + I + + + L S N P + + + R+ W Q Sbjct: 173 LYGVFIPYEGIAIRRVFLDAQNQRFILRSENPALPEQYLPLGKHHSSIVGRVSWVLQ 229 >gi|282879124|ref|ZP_06287883.1| peptidase, S24 family [Prevotella buccalis ATCC 35310] gi|281298766|gb|EFA91176.1| peptidase, S24 family [Prevotella buccalis ATCC 35310] Length = 145 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 8/116 (6%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 FP+ + + + + SM+ GDI +++ +++ Sbjct: 27 FPSPAGD---YLQDSLDFNRDFIRHPDATFYGRVSGDSMIDAGINDGDIAVIDRSVEAGH 83 Query: 168 GDRLLIKPRTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARILW 220 D ++ G+ K L I+L N + V E+ E ++W Sbjct: 84 NDVIVAYFN-GEFTIKYLDMTHVHEGYIELRPANKAFRPIRVSELDKFEVWGVVVW 138 >gi|156933900|ref|YP_001437816.1| hypothetical protein ESA_01726 [Cronobacter sakazakii ATCC BAA-894] gi|156532154|gb|ABU76980.1| hypothetical protein ESA_01726 [Cronobacter sakazakii ATCC BAA-894] Length = 143 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 7/108 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V H ++ + SM GD+L+++SA++ GD ++ Sbjct: 36 DYVEKRVSLDAHCIVH--PNATYFLRAAGESMNGAGIEDGDLLVVDSALKPQEGDIVVAA 93 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221 G+ K L L+ +N + + ++ + W Sbjct: 94 -LEGEFTVKTLRLHP--VAQLVPMNPDFAPIPLGGDAEVVIFGVVTWV 138 >gi|152969737|ref|YP_001334846.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894236|ref|YP_002918970.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae NTUH-K2044] gi|330007476|ref|ZP_08305957.1| peptidase S24-like protein [Klebsiella sp. MS 92-3] gi|150954586|gb|ABR76616.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546552|dbj|BAH62903.1| DNA polymerase V subunit D [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535458|gb|EGF61927.1| peptidase S24-like protein [Klebsiella sp. MS 92-3] Length = 139 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ +GD+L+++SA + GD ++ Sbjct: 32 DYVE--KRIDLNELLVQHPSATYFVKAAGDSMIDAGIDEGDLLVVDSARKAEHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 G+ K L + L +N Y V + ++ + Sbjct: 90 -VGGEFTVKKLQLLP--RVQLNPMNPAYSPIVVGREETLDIFGVV 131 >gi|163867627|ref|YP_001608826.1| hypothetical protein Btr_0370 [Bartonella tribocorum CIP 105476] gi|161017273|emb|CAK00831.1| hypothetical protein BT_0370 [Bartonella tribocorum CIP 105476] Length = 216 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 64/223 (28%), Gaps = 47/223 (21%) Query: 9 IWEAIDRMAERHNLTPSGLARKA------GLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I + + L+ S L+R+ +D + NK + R S + +I Sbjct: 26 ISQWLQNALSEAGLSQSELSRQLTASLGRSIDRAAVNKMLKGT-----RDISARELLEIS 80 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T +I +P G + + Sbjct: 81 KLTGASIPTNHLVPLIG------------------------------SVGAGGEIIAIDS 110 Query: 123 I-RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGD 179 + + SM P +G +L + + +R +IK + G Sbjct: 111 GCLEEVEAPPSAPKGTVAVRVVGDSMFPAIEEGSLLFYSYHLPPENLINNRAIIKTKCGK 170 Query: 180 IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + KVL + L S+N Y ++EW A I W Sbjct: 171 VYIKVLRLGKEKGKWVLSSINGKYADIV--DVELEWCAPIDWI 211 >gi|270639499|ref|ZP_06222109.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] gi|270317366|gb|EFA28895.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Haemophilus influenzae HK1212] Length = 87 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 SM P+ G + ++ + ++ G + K+L + + + S N Sbjct: 1 MIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYN 60 Query: 200 -CCYPVDTVEMSDIEWIARILWAS 222 +P + E+ DI + ++ W S Sbjct: 61 TEEHPDEIAELQDISVLGKVFWYS 84 >gi|218549260|ref|YP_002383051.1| DNA polymerase V subunit UmuD [Escherichia fergusonii ATCC 35469] gi|218356801|emb|CAQ89429.1| DNA polymerase V, subunit D [Escherichia fergusonii ATCC 35469] Length = 139 Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 7/125 (5%) Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 K L FP+ + V + + + + K SM Sbjct: 5 KPAELREIITLPLFSDLVPCGFPSPAA-DYVE--QRIDLNQLVIQHPSATYFVKAAGDSM 61 Query: 148 -LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 GD+L+++SAI + GD ++ G+ K L R S+ L+ +N Y T Sbjct: 62 IEAGIGDGDLLVVDSAITASHGDIVIAAVD-GEFTVKRLQLRP--SVQLVPMNSSYSPIT 118 Query: 207 VEMSD 211 + + Sbjct: 119 LGSEE 123 >gi|108804740|ref|YP_644677.1| SOS-response transcriptional repressor, LexA [Rubrobacter xylanophilus DSM 9941] gi|108765983|gb|ABG04865.1| SOS-response transcriptional repressor, LexA [Rubrobacter xylanophilus DSM 9941] Length = 209 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 53/218 (24%), Gaps = 34/218 (15%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGL--DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + R+ + + +AR GL T+ + K G Sbjct: 12 EILRYLARLGTDERPSVAEIARAVGLRSTQTAHHHLKLLEAGG----------------- 54 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + S G G G + S Sbjct: 55 -------YIERGEVPAHQRRPVRLTAKGWEAVS---GAPLLGRVAAGPGIEAIVDEGGAS 104 Query: 126 PHNGIYAIQ---TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + SM +GD L++ G +L R + Sbjct: 105 SLAAELLVPRPGRRRYTVTVTGDSMTGARIEEGDTLLVEENEDPPDGAVVLALLRGETVT 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L G + L N + S++ ++ Sbjct: 165 VKRLYRD-GDMVRLRYQNGEQREIVLPASEVRIQGEVI 201 >gi|322805231|emb|CBZ02795.1| sos-response repressor and protease LexA [Clostridium botulinum H04402 065] Length = 334 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM+ GD +++ D + G K L+ ++ ++ Sbjct: 245 KNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 303 Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216 LM N Y + I Sbjct: 304 -LMPENKRYKPIEIREEGASIIG 325 >gi|148359928|ref|YP_001251135.1| phage repressor [Legionella pneumophila str. Corby] gi|148281701|gb|ABQ55789.1| phage repressor [Legionella pneumophila str. Corby] Length = 220 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 14/221 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARK-AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++I I + + +T LA + A L P + ++ R P + Sbjct: 1 MDIREQIGNRITKARKELGITIKELAARTAELSPARISNWEQGT-----RSPGPLEAKLL 55 Query: 62 LAATNETICQLLDLPFSDGRT--TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 N + LL L + + + + + + + Sbjct: 56 ADQLNVSAAYLLCLTDNPQGDLIQNPENRFRHIPILSVKDAPHAKEILGQQEPFIFEKTI 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + +P A+ +D+SM P GD+++++ +Q + G +L+ Sbjct: 116 LIDSLNPSIKSPAL----FATLVEDSSMQPELNPGDVVVVDGELQPSPGHYVLVYLTQKK 171 Query: 180 IVAKVLISRRGRS-IDLMSLNCCYPVDTV-EMSDIEWIARI 218 L++ + + ++ + +D I + Sbjct: 172 QTVLRQYGEADGCLFQLLASSELWATISIKQSNDAHLIGVV 212 >gi|317505599|ref|ZP_07963508.1| SOS mutagenesis and repair protein UmuD [Prevotella salivae DSM 15606] gi|315663283|gb|EFV03041.1| SOS mutagenesis and repair protein UmuD [Prevotella salivae DSM 15606] Length = 200 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 2/105 (1%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 +T + + + + SM+ GDI+I++ + + + + Sbjct: 88 DTDEQAQDVDILRMLCPNPEASFLIRVKGNSMIDAKIYDGDIIIVDKSNRSPSNHEVAVC 147 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K ++ ++ + L N Y V+ D + ++ Sbjct: 148 ELNGEYTIKHVL-QKDGRVWLYPANPDYQPIEVKECDDFSVWGVV 191 >gi|290509915|ref|ZP_06549286.1| DNA polymerase V [Klebsiella sp. 1_1_55] gi|289779309|gb|EFD87306.1| DNA polymerase V [Klebsiella sp. 1_1_55] Length = 139 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM +GD+L+++S+ GD ++ Sbjct: 32 DYVE--QRIDLNELLVNHPSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G+ K L + L +N Y V D Sbjct: 90 VD-GEFTVKKLQLHP--RVQLNPMNPAYSPIVVGSED 123 >gi|152969991|ref|YP_001335100.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954840|gb|ABR76870.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 139 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM +GD+L+++S+ GD ++ Sbjct: 32 DYVE--QRIDLNELLVNHPSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G+ K L + L +N Y V D Sbjct: 90 VD-GEFTVKKLQLHP--RVQLNPMNPAYSPIVVGSED 123 >gi|108763097|ref|YP_632617.1| LexA repressor [Myxococcus xanthus DK 1622] gi|123247597|sp|Q1D406|LEXA_MYXXD RecName: Full=LexA repressor gi|108466977|gb|ABF92162.1| LexA repressor [Myxococcus xanthus DK 1622] Length = 222 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 6/108 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + + + + SM+ GD L + G+ ++ Sbjct: 105 ENMEDSVKIDSFLLGGVNGREVFALRVKGQSMIDDGIHDGDYLFVKKTPSAQPGEIVVAL 164 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 + K G I N V ++ + +++ Sbjct: 165 I-EDEATVKRYYP-EGDRIRFQPANATMQPIYVSRAEFRSTMILGQVV 210 >gi|11640731|gb|AAG39348.1| RulA [Pseudomonas syringae pv. syringae] Length = 141 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++ + Sbjct: 19 YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKINGDSMEGAKIFHDSLVFV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ +++ K+LI G + L S N YP + + I ++ Sbjct: 76 DRSRKPSSGSIVIAAVN-NELLCKILI-LHGDHVVLKSANPAYPPRHILEGEELSIWGVV 133 >gi|253699167|ref|YP_003020356.1| SOS-response transcriptional repressor, LexA [Geobacter sp. M21] gi|251774017|gb|ACT16598.1| SOS-response transcriptional repressor, LexA [Geobacter sp. M21] Length = 258 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 29/237 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNL--TPSGLARKAGL-DPTSFNKSKRFGIEGR--NRWPST 55 MT K++ + I AERH + +A G + R + R + Sbjct: 1 MTP-KQKRVLDFIVSFAERHGFQPSQQEIASGCGFGSLGTVQHYLRALEKDGHLTRQWNA 59 Query: 56 ESIFKILAAT-------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + ++ + + + E + + L Sbjct: 60 KRGLQLANPPCPPFAKGGTRVHGQRLVSSFTPGSPELQNQPFTTLEVEQQPFAKRGTLQT 119 Query: 109 FPTGNKWNTVGV--------PEIRSPHNGIYAIQTQD-----TRHKTQDTSMLPL-YRKG 154 + + P + + ++ + SM+ + G Sbjct: 120 PAVAPIIMELPLVGIVAAGRPVQAFQLADAIEVPSAMAGPGNVVYEVRGDSMVEMGIMDG 179 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 D + ++ G ++ G I K + + G SI L+ N V D Sbjct: 180 DYVAVHQQAVAETGQTVI-AEVNGSITIKKYVRK-GNSIQLLPANSAMSPIAVSEDD 234 >gi|290512889|ref|ZP_06552254.1| DNA polymerase V [Klebsiella sp. 1_1_55] gi|289774772|gb|EFD82775.1| DNA polymerase V [Klebsiella sp. 1_1_55] Length = 139 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM +GD+L+++S+ GD ++ Sbjct: 32 DYVE--QRIDLNELLVNHPSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G+ K L + L +N Y V D Sbjct: 90 VD-GEFTVKKLQLHP--RVQLNPMNPAYSPIVVGSED 123 >gi|160897980|ref|YP_001563562.1| peptidase S24/S26 domain-containing protein [Delftia acidovorans SPH-1] gi|160363564|gb|ABX35177.1| peptidase S24 and S26 domain protein [Delftia acidovorans SPH-1] Length = 149 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 5/109 (4%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V E + SM P +R+GD ++++ ++ GD + Sbjct: 29 ARSEAVEGLESLGTEVSANEASVHAFFLQLAGNSMTPEFREGDRVLIDPGVKPQPGDYVA 88 Query: 173 IKPRTGDIVAKVLI-----SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + + + + +L+ LN +PV + + I Sbjct: 89 AQVGKTEALFRKYRLHGNDRLGNEVFELIPLNQDHPVMRSDEHGLSVIG 137 >gi|237794204|ref|YP_002861756.1| putative serine peptidase [Clostridium botulinum Ba4 str. 657] gi|229263980|gb|ACQ55013.1| putative serine peptidase [Clostridium botulinum Ba4 str. 657] Length = 527 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM+ GD +++ D + G K L+ ++ ++ Sbjct: 438 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 496 Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216 LM N Y + I Sbjct: 497 -LMPENKKYKPIEIREEGASIIG 518 >gi|323949617|gb|EGB45503.1| peptidase S24 [Escherichia coli H252] gi|323953758|gb|EGB49569.1| peptidase S24 [Escherichia coli H263] Length = 199 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 21/190 (11%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTT 83 L G S ++ G +R+ S S+ KIL N + + Sbjct: 9 KDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILKVNENWLLNGGELNTGDSLDLS 66 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 K +PLL + S + + I S + I + Sbjct: 67 LPPIKTVPLLSLQQAASWS-------------DYMKNSSITSCVQLVGEIPANTFAVVLE 113 Query: 144 DTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM G + ++ V G+ +L P+ + G I L+ Sbjct: 114 SDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPT 173 Query: 199 NCCYPVDTVE 208 N YP ++ Sbjct: 174 NPRYPSIMLD 183 >gi|313139988|ref|ZP_07802181.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132498|gb|EFR50115.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 141 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 3/100 (3%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 E S + SM GD L+++S++ GD ++ G+ Sbjct: 31 EEGFSLDAHVIKHPEYTFIATVAGDSMEGAGIFHGDWLVVDSSLTPEDGDVVVAVLD-GE 89 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L+SR L + N YP I ++ Sbjct: 90 LTVKRLLSR-DGRPMLHAENPRYPDFVPSEHGDVVIWGVV 128 >gi|328474040|gb|EGF44850.1| LexA repressor [Lactobacillus rhamnosus MTCC 5462] Length = 174 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 48/187 (25%), Gaps = 28/187 (14%) Query: 7 KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 K+I + I E H P+ + + GL +S ++ L Sbjct: 11 KQILQTIYEAIEDHGYPPTVREIGKSVGLSSSS-------------------TVAAYLEK 51 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 L D E L F + G G G + + Sbjct: 52 LL-----AAGLIAKDPSKPRTIEVTAAGLDFIGVQAQGIPIVGTVAAGVPITAIENIDDY 106 Query: 125 SPHNGIYAIQTQ-DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 P + Q +SM+ + GD +I+ G ++ + Sbjct: 107 FPVPDDLPYSADELFMLRVQGSSMIKIGILDGDQIIVKKQNDAENGQIVVAMTEEDEATV 166 Query: 183 KVLISRR 189 K + Sbjct: 167 KRFYKEK 173 >gi|163803931|ref|ZP_02197765.1| repressor protein c2 [Vibrio sp. AND4] gi|159172268|gb|EDP57162.1| repressor protein c2 [Vibrio sp. AND4] Length = 226 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 16/197 (8%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ ++ +R I WP + K+ + + + + + Sbjct: 32 SSSTLSRIERGAI---PSWPIVDGFCKLFGWS-LSDLERKLGRTVSNEKPQVSTESPRKR 87 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY--AIQTQDTRHKTQDTSMLP-- 149 + + G W E + + SM Sbjct: 88 HVSSAIGREIPIVSWVNAG-GWAESPCIESYNQEKQFVTGKMPKNTFGLVVSGNSMENCE 146 Query: 150 ---LYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 + G ++++N I+ GD ++ T + K L+ G+ L+ LN Y V Sbjct: 147 MKETFPNGSLILVNPDIEPEIGDYVVAVDEVTQEATFKQLLEDCGKK-MLVPLNSQYQVM 205 Query: 206 TVEMSDIEWIARILWAS 222 V + I +++ S Sbjct: 206 NVT--ETTMIKGVVFRS 220 >gi|28198903|ref|NP_779217.1| phage-related repressor protein [Xylella fastidiosa Temecula1] gi|28057001|gb|AAO28866.1| phage-related repressor protein [Xylella fastidiosa Temecula1] Length = 229 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 65/211 (30%), Gaps = 10/211 (4%) Query: 12 AIDRMAERHNLTPSG-LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 A+ ++++ +A K G D + ++ + + + ++ A + Sbjct: 15 ALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMFELLVRAYPDAFK 74 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN-G 129 ++ + + + + + G + + N+V P G Sbjct: 75 EIATMSRALDNREDTNYVRVQHIEAEAHMGPGRINEDL---PEVINSVEFPPNYIRSLIG 131 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + SM P G+ +++++ GD L + K L R Sbjct: 132 FLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLVNTGSGQQIKALHER- 190 Query: 190 GRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218 I + S++ YP + I R+ Sbjct: 191 NGYIYITSMDKDLYPDFV--ADENTIIGGRV 219 >gi|217966469|ref|YP_002351975.1| SOS-response transcriptional repressor, LexA [Dictyoglomus turgidum DSM 6724] gi|217335568|gb|ACK41361.1| SOS-response transcriptional repressor, LexA [Dictyoglomus turgidum DSM 6724] Length = 199 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 8/172 (4%) Query: 51 RWPSTESIFKILA-ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 R P+ + K L ++ + + G ++ K+ L G Sbjct: 26 RIPTVREVSKALGLNSSGSGYFHMKALVEKGYLSQDKKGRFYLRNLINEEIIYLPLVGTI 85 Query: 110 PTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNC 167 G + + P + I + K + SM GD++I+ Sbjct: 86 KAGIPVESPEYVDEYIPVPKSFVKIPEKSFLLKVKGDSMEGAHILDGDLIIVQKQDIAQK 145 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ ++ G+ K L S L N Y + I +++ Sbjct: 146 GEIVVALKD-GESTVKFL-SENYGIPCLKPANPRYSEIYPP---FKIIGKVI 192 >gi|220926724|ref|YP_002502026.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951331|gb|ACL61723.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 29/235 (12%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T + + I E+ LT LA G ++ + +R S +++ KI Sbjct: 7 TRLTPAEKPNRIAEWREKRGLTLEALAEATGFSTGYLSRMQNG-----SRNVSLKNLAKI 61 Query: 62 LAATNETICQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 A + L+ ++ G F + + Sbjct: 62 SEALKVPVADLVPEGEEVPPGGEASPIPLPKGMVRVIGIAKAGLFREVESLAYFVHDPIP 121 Query: 120 -VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILIL----NSAIQVNCGDR 170 P+ PH +A + SM G I + I + G + Sbjct: 122 AYPDTEFPHARQFA-------VLVEGDSMNAATPVPIPDGAKCICVDFDDINIPLRSGMK 174 Query: 171 LLIKPRTG-----DIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++++ + K + R S + + V R++ Sbjct: 175 VVVEQIRDGGHLREWSVKEVKLFADRVEYHPRSTSREFKPIVVPKDATADTGRVV 229 >gi|168182757|ref|ZP_02617421.1| LexA repressor [Clostridium botulinum Bf] gi|182674020|gb|EDT85981.1| LexA repressor [Clostridium botulinum Bf] Length = 527 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM+ GD +++ D + G K L+ ++ ++ Sbjct: 438 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 496 Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216 LM N Y + I Sbjct: 497 -LMPENKKYKPIEIREEGASIIG 518 >gi|54298316|ref|YP_124685.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris] gi|53752101|emb|CAH13528.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris] Length = 220 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 14/221 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARK-AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++I I + + +T LA + A L P + ++ R P + Sbjct: 1 MDIREQIGNRITKARKELGITIKELAERTAELSPARISNWEQGT-----RSPGPMEAKLL 55 Query: 62 LAATNETICQLLDLPFSDGRT--TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 N + LL L + + K + + + + Sbjct: 56 ADQLNVSAAYLLCLTDNPQGDLIQNPENKFRHIPLLSMKDAIHAKEILGQQEPFIFEKTI 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTG 178 + + +P A+ +D+SM P GD+++++ +Q + G + + + Sbjct: 116 LIDSLNPSIKSPAL----FATLVEDSSMQPELNPGDVVVVDGELQSSPGHYVLVYLTQKK 171 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 V + G L++ + + ++ + +D I + Sbjct: 172 QTVLRRFGEADGCLFQLLASSELWATISIKQSNDAHLIGVV 212 >gi|239815691|ref|YP_002944601.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239802268|gb|ACS19335.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 222 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 58/222 (26%), Gaps = 31/222 (13%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET--------ICQLL 73 +T +G+ ++ +K +R R + ++ + Sbjct: 1 MTQKQAEAASGVKQSNISKIERGDTG---RSMALLALARTYRVDPNWLDTGDGPAPWDPP 57 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--------TGNKWNTVGVPEIRS 125 + +E P S G P + + R Sbjct: 58 QPGTARDNASEPPGAYRVTRTPPSGPSFNPGTPGTVPLIAWTQVASWKGAAQGTIQAERW 117 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP------LYRKGDILILNSAIQ-VNCGDRLLIKPR-T 177 + + + SM Y I+ +++ G+R++ + + Sbjct: 118 LPCVAHHSPGNTYALRVRGDSMTAPSGHLKSYPAESIIFVDTQRTTPEDGERIIARLDAS 177 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ KV + L+ LN + S + ++ Sbjct: 178 NEVTFKVF-KQEDGRRWLLPLNPKHEPI---RSAFTVLGTVV 215 >gi|78212710|ref|YP_381489.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CC9605] gi|78197169|gb|ABB34934.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CC9605] Length = 143 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V V + + T SM GD+L+++ ++ G ++ Sbjct: 34 ADDYVDV--GIDLNEQLIRHPTSTFFLHVSGESMTDAGIHDGDLLVVDRSLDPRPGQVVV 91 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G K L+ R + L + + YP + +++ Sbjct: 92 AVLD-GAFTLKRLMHHR-GRLRLEAAHPDYPPLELHRCGEVQI 132 >gi|156147187|gb|ABU53768.1| cje0215 [Campylobacter phage CGC-2007] Length = 111 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 2/97 (2%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 I + + SM PL + G I +++ + + Sbjct: 11 IMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTRDGLFI 69 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K ++ + I L SLN Y + D I ++ Sbjct: 70 KQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 105 >gi|182681608|ref|YP_001829768.1| putative phage repressor [Xylella fastidiosa M23] gi|182631718|gb|ACB92494.1| putative phage repressor [Xylella fastidiosa M23] gi|307580043|gb|ADN64012.1| phage-related repressor protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 224 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 65/211 (30%), Gaps = 10/211 (4%) Query: 12 AIDRMAERHNLTPSG-LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 A+ ++++ +A K G D + ++ + + + ++ A + Sbjct: 10 ALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMFELLVRAYPDAFK 69 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN-G 129 ++ + + + + + G + + N+V P G Sbjct: 70 EIATMSRALDNREDTNYVRVQHIEAEAHMGPGRINEDL---PEVINSVEFPPNYIRSLIG 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + SM P G+ +++++ GD L + K L R Sbjct: 127 FLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLVNTGSGQQIKALHER- 185 Query: 190 GRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218 I + S++ YP + I R+ Sbjct: 186 NGYIYITSMDKDLYPDFV--ADENTIIGGRV 214 >gi|257897429|ref|ZP_05677082.1| repressor [Enterococcus faecium Com12] gi|257833994|gb|EEV60415.1| repressor [Enterococcus faecium Com12] Length = 169 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193 + K + SM+P +++ V G+ +I + K + + Sbjct: 78 GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 136 Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222 LM N Y ++ ++ + + + S Sbjct: 137 MLMPDNNDYHPYIIDENNPARILGKAVKVS 166 >gi|315637232|ref|ZP_07892451.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315478396|gb|EFU69110.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 215 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 59/196 (30%), Gaps = 16/196 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 +A+ + F K+K++ R P E + + + Sbjct: 27 KDIAQALNISYDVFRKAKQYN-----RVPYWEIMQFLAKRNISINWFFFNQLPESLIENT 81 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--RHKT 142 + +GG + + P I Y + Sbjct: 82 SNYIILKYQKNIIGSAGGGAIN--------YEINPEPLIIDKQILDYINSNYKYTEVLQA 133 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P + G ++ ++ + + + + +I K +I + +I L S+N + Sbjct: 134 FGESMEPDIKDGSLIFVDKSKKDINKKGIFVVSAKDEIYIK-IIKQEQSNILLQSINEEF 192 Query: 203 PVDTVEMSDIEWIARI 218 + +I+ I ++ Sbjct: 193 NNIRFNIDEIDIIGKV 208 >gi|300925164|ref|ZP_07141074.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] gi|300418694|gb|EFK02005.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] Length = 79 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 P + G +++++ V GD + + + K LI G+ L LN YP+ Sbjct: 1 PSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN 59 Query: 209 MSDIEWIARILWASQ 223 + +++ ASQ Sbjct: 60 -DSCSVVGKVI-ASQ 72 >gi|291617316|ref|YP_003520058.1| UmuD [Pantoea ananatis LMG 20103] gi|291152346|gb|ADD76930.1| UmuD [Pantoea ananatis LMG 20103] gi|327393763|dbj|BAK11185.1| SOS-response transcriptional repressor UmuD [Pantoea ananatis AJ13355] Length = 145 Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + I + + SM GD+L+++SA++ + GD ++ Sbjct: 38 DYVE--QRIDLNKLIVQHPSSTYFVRVSGESMTGAGINDGDMLVVDSALRASHGDIVV-A 94 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 G+ K L + + LM +N + + D +E + Sbjct: 95 SVEGEFTVKRLQLQP--CLQLMPMNRQFKPIAISTEDALEVFGVV 137 >gi|224535599|ref|ZP_03676138.1| hypothetical protein BACCELL_00463 [Bacteroides cellulosilyticus DSM 14838] gi|224522790|gb|EEF91895.1| hypothetical protein BACCELL_00463 [Bacteroides cellulosilyticus DSM 14838] Length = 214 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++ S + G+ SF +S + G E+I +I N Sbjct: 2 ILQRIKEYIDLKGISISAFEKSIGMSNASFGRSLK--NNGAIGTDKLENILRIYQEINPD 59 Query: 69 I----CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + S ++ + F +P Sbjct: 60 WLLTGQGNMVRSGSKITLPPPVTEKKGIPLISYQTLPTLFTGKKGTFSQATEYFSLP--- 116 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDIV 181 D +D SM P Y+ GDI+ +++ + + Sbjct: 117 -------LFNEADFLIPVKDNSMAPQYKGGDIIACKCLSNEGLFFQWNKIYLLLTPQGAL 169 Query: 182 AKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + + L+S + YP + S I +A +L Sbjct: 170 IKRIHPGKDEEHLTLVSDHTDYPPFQLHRSLIGNVALVL 208 >gi|330886052|gb|EGH19953.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. mori str. 301020] Length = 141 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM +++++ Sbjct: 19 YTFKIPAGFPNPAA-DYIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDNLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + + K+LI + G + L S N YP + + I ++ Sbjct: 76 DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133 >gi|241763576|ref|ZP_04761627.1| putative phage repressor [Acidovorax delafieldii 2AN] gi|241367169|gb|EER61523.1| putative phage repressor [Acidovorax delafieldii 2AN] Length = 201 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 3/107 (2%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKP 175 + + E SM P + GDIL++++ D + + Sbjct: 88 QIALSEQWVARRLQPTKLNALRFIHAYGDSMSPTFEDGDILLVDTGIKDPKIIDGVYVMA 147 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARILW 220 + K + R +++ S N V D I+ + R++W Sbjct: 148 ANDRVYIKRVRQRMDGVVEISSDNATVKTVDVLNGDHRIDILGRVVW 194 >gi|313201787|ref|YP_004040445.1| lexa repressor [Methylovorus sp. MP688] gi|312441103|gb|ADQ85209.1| LexA repressor [Methylovorus sp. MP688] Length = 192 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 4/102 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + S + + +Q + SM+ D++I+ N GD ++ Sbjct: 87 DRHDTLSIDDYLIERPSQTVLITVKGDSMIDAGIVPDDVVIVEKRQVANVGDIVVAIVD- 145 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L +G+ L+ N YPV ++E ++ Sbjct: 146 NEFTLKTLGREKGQ-FVLLPANKAYPVIR-PQGNLEIFGVVV 185 >gi|321156976|emb|CBW38965.1| Putative phage repressor protein [Streptococcus phage V22] Length = 262 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 68/262 (25%), Gaps = 57/262 (21%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG--IEGRNRWPSTESIFKILAAT 65 K+ E + H L+ + L + ++ + PS ++I KI Sbjct: 2 KLGELLKSYRTEHKLSMDAFCELSDLTKGYISMLEKNEHPKSKKPIVPSYDTIEKIAKGM 61 Query: 66 NETICQLLDLPFSDGR-------------------TTEKKEKEIPLLYFPPSGSGGFFDS 106 + L+D+ D + ++ +L + + Sbjct: 62 QISTEDLIDMLDDDQEIQINATPALLSKSPIQTIYDELEPPRQGKVLNYAKRQLKEQRNE 121 Query: 107 GVFPTGNKWNTV----------------------------GVPEIRSPHNGIYAIQTQDT 138 + + S + Sbjct: 122 EETKINEVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYDAI 181 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM P + GD L + + QV+ + + G K L + L SL Sbjct: 182 A-YVVGNSMEPKIKNGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLESL 234 Query: 199 NCCYPVDTVEMS-DIEWIARIL 219 N Y ++ S DI I ++ Sbjct: 235 NPDYEDIHLDESNDIRTIGEVV 256 >gi|153930906|ref|YP_001383283.1| putative LexA repressor [Clostridium botulinum A str. ATCC 19397] gi|153936900|ref|YP_001386831.1| putative LexA repressor [Clostridium botulinum A str. Hall] gi|152926950|gb|ABS32450.1| LexA repressor [Clostridium botulinum A str. ATCC 19397] gi|152932814|gb|ABS38313.1| LexA repressor [Clostridium botulinum A str. Hall] Length = 535 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM+ GD +++ D + + G K L+ ++ ++ Sbjct: 446 KNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIVAVNLD-GSATLKRLLIKKSGAV 504 Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216 LM N Y + I Sbjct: 505 -LMPENKKYKPIEILEEGASIIG 526 >gi|15838259|ref|NP_298947.1| phage-related repressor protein [Xylella fastidiosa 9a5c] gi|9106718|gb|AAF84467.1|AE003992_3 phage-related repressor protein [Xylella fastidiosa 9a5c] Length = 231 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 63/211 (29%), Gaps = 10/211 (4%) Query: 12 AIDRMAERHNLTPSG-LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 A+ ++++ +A K G D + ++ + + + + ++ A + Sbjct: 17 ALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMLELLVRAYPDAFK 76 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNG 129 ++ + + + G + N+V P G Sbjct: 77 EIATMSRVLDNREATNYVRVQHIEAEAHMGPGRINEDF---PEVVNSVEFTPNYIRSLIG 133 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + SM P G+ +++++ GD L + K L R Sbjct: 134 FVPPPGRLKLITGTGDSMSPKILPGETVLVDTGCNTFVGDGLYLINTGSGQQIKALHER- 192 Query: 190 GRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218 I + S++ YP + I R+ Sbjct: 193 NGYIYVTSMDKALYPDFV--ADENTIIGGRV 221 >gi|86139840|ref|ZP_01058406.1| umuD protein [Roseobacter sp. MED193] gi|85823469|gb|EAQ43678.1| umuD protein [Roseobacter sp. MED193] Length = 140 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 2/103 (1%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + SM GDIL+++ +I GD ++I Sbjct: 29 EDHLEGKLDLNQHLIRRPAATFFVRASGESMRDAGIFDGDILVIDRSITPVAGD-VVIAV 87 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 GD+ K L+ L + N +P V+ E + Sbjct: 88 LHGDLTVKRLMKAGPEGWALQAENAAFPNIPVDEEGCEIWGVV 130 >gi|330830155|ref|YP_004393107.1| peptidase S24-like domain-containing protein [Aeromonas veronii B565] gi|328805291|gb|AEB50490.1| Peptidase S24-like domain protein [Aeromonas veronii B565] Length = 120 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 5/97 (5%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + A + SM+ R GD+L+++ + + G ++ G+ Sbjct: 17 IDLNQLCVAHPAATYFVRAAGDSMVDHGIRDGDLLVVDRSRKARHGSVVIAAVD-GEFTV 75 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 K L ++ L+ N Y E ++E + Sbjct: 76 KKLQLAP--TVALLPGNPAYRPIHFNEGQELEIFGVV 110 >gi|322508840|gb|ADX04294.1| Transciptional regulator [Acinetobacter baumannii 1656-2] Length = 251 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 29/238 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ EA+D MA LA K + + K P + I Sbjct: 10 KRLNEALDEMAIPVRGRAVLLASKFEVSAKAAGKWLNGESI-----PEMTKLIDIALWLG 64 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-------GSGGFFDSGVFPTGNKWNTVG 119 + + LL + ++ +L + + F+D G + + Sbjct: 65 KGVEWLLTGSERSTLKENGRITDLEILTYEDGDPIPDGYMAIDFYDDVYASAGGGYLNIE 124 Query: 120 VP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 P + SM+P G + ++++ + + Sbjct: 125 QPSAVKMLFPINELRKYDVKPEYAKVFIVDGESMVPDLYPGQRISIDTSAKKIYDGEIYA 184 Query: 174 KPRTGDIVAKVLI---SRRGRSIDLMSLNCC--------YPVDTVEMSDIEWIARILW 220 + ++ K+L +S N Y +E +I+ + + W Sbjct: 185 FLKGDELKVKILFDWDEMGKGGFKAVSRNPDKVRFPDEYYSPARIEADNIQIVGQYWW 242 >gi|254425161|ref|ZP_05038879.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335] gi|196192650|gb|EDX87614.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335] Length = 156 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 5/95 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM P GD+LI++ +I+ G ++ Sbjct: 43 ADDYIE--KTLDLNAHLIENPAATFFARACGDSMEPGGIFDGDLLIIDRSIEPRNGRVVV 100 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 + G+++ K L + R++ L + N YP V Sbjct: 101 VALN-GEMLVKRLHTTLDRTV-LSADNRNYPPIEV 133 >gi|224282829|ref|ZP_03646151.1| putative prophage repressor [Bifidobacterium bifidum NCIMB 41171] Length = 102 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 SM GD L+++S++ GD ++ G++ K L+SR Sbjct: 5 PEYTFIATVAGDSMEGAGIFHGDWLVVDSSLTPEDGDVVVAVLD-GELTVKRLLSR-DGR 62 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 L + N YP I ++ Sbjct: 63 PMLHAENPRYPDFVPSEHGDVVIWGVV 89 >gi|87310842|ref|ZP_01092968.1| LexA protein [Blastopirellula marina DSM 3645] gi|87286357|gb|EAQ78265.1| LexA protein [Blastopirellula marina DSM 3645] Length = 206 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 4/124 (3%) Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 L + G G G + E+ + + + Sbjct: 69 PNMSRAIQLTCDEADEVGLPLVGQIAAGVLHEAIEQKELIDFRDMF--ARHDQFVLAVKG 126 Query: 145 TSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 SM GD +++ + G ++ + G+ K + I L N Sbjct: 127 DSMIEAHIEDGDYVVVRKQDSASLGQIVVAETDDGEATLKYWFPEKN-RIRLQPANSSMD 185 Query: 204 VDTV 207 V Sbjct: 186 PIYV 189 >gi|283833032|ref|ZP_06352773.1| UmuD protein [Citrobacter youngae ATCC 29220] gi|291070649|gb|EFE08758.1| UmuD protein [Citrobacter youngae ATCC 29220] Length = 139 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + ++ + + K+ SM+ GD+LI++SA GD ++ Sbjct: 32 DYIE--KRIDLNDLLVQHPSATYFVKSSGDSMVGAGIGDGDLLIVDSARNPAHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 G+ K L + L N Y + D ++ + Sbjct: 90 I-EGEFTVKRLQVHP--VVMLKPENSAYAPIIIGSEDALDIFGVV 131 >gi|307608950|emb|CBW98359.1| hypothetical protein LPW_02131 [Legionella pneumophila 130b] Length = 213 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 16/197 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + + E + ++ H ++ S LAR G+ + + + R + E + Sbjct: 1 MADMT---LSENLQQLMRIHGNISVSELARLTGIPQPTIHHILAGSTK-NPRKKALEELS 56 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + L KE + P P+G Sbjct: 57 RYFSVS----IDELIGQEPLPAVIPDAVKENLQISTIPVIKWESLKEW--PSGTARTQDT 110 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + I DTSM PL+++ +LI +S N D +++ Sbjct: 111 QEILIDK-----KIDKNSFALIMPDTSMEPLFQQNSLLIFDSGKTPNDRDFVIVHLSKEG 165 Query: 180 IVAKVLISRRGRSIDLM 196 I+A + + L Sbjct: 166 IIAFNRLFIENNTFYLR 182 >gi|257900262|ref|ZP_05679915.1| repressor [Enterococcus faecium Com15] gi|257838174|gb|EEV63248.1| repressor [Enterococcus faecium Com15] Length = 169 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193 + K + SM+P +++ V G+ +I + K + + Sbjct: 78 GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 136 Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222 LM N Y ++ ++ + + + S Sbjct: 137 MLMPDNNDYHPYIIDENNPARILGKAVKVS 166 >gi|321157243|emb|CBW39227.1| Putative phage repressor protein [Streptococcus phage 8140] Length = 267 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 65/258 (25%), Gaps = 51/258 (19%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN---------- 50 M FS ++ + N + L+R G+ P++ + Sbjct: 16 MKVFS-----ANLNSILSDRNCKQAELSRATGIPPSTLTGYVKGTSLPIPGNVQKIADFF 70 Query: 51 --------------------RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90 +T SI I + + KE+ Sbjct: 71 GVPKSVLDPRFVTNNSMVDDSSSNTSSIQTIYDQLEPPRQGKVLTFAERQLKEQNKEETK 130 Query: 91 PLLYFPPSGSGGFFDSGVF-------PTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 + + G+ + S + Sbjct: 131 INEVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYDAIA-YV 189 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P + GD L + + QV+ + + G K L + L SLN Y Sbjct: 190 VGNSMEPKIKNGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDY 243 Query: 203 PVDTVEMS-DIEWIARIL 219 ++ S DI I ++ Sbjct: 244 EDIHLDESNDIRTIGEVV 261 >gi|126641627|ref|YP_001084611.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 199 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/198 (9%), Positives = 59/198 (29%), Gaps = 20/198 (10%) Query: 29 RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88 R G + + + + +S+ ++L T + + Sbjct: 2 RGTGAGKATVSSWIKGAVN--PSATYIDSLAQVLKTTPTWLLTGQINDTASNMDNNVDIN 59 Query: 89 EIPLLYFPPSGSG---GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + + + P S G + + + + + + + Sbjct: 60 SMASVIYAPVLSWVQAGNWTDMDAVNIQECEKLPLVPGAG---------KKSFYLEVKGL 110 Query: 146 SMLPLYRKGDILILNSA---IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 S P + +G+ + ++ + G+ ++++ + K L++ L LN + Sbjct: 111 SNAPYFEEGEKICIDPDYVLEDIQTGEMVVVRC-GNEATFKALVAEPNG-YYLKPLNPNW 168 Query: 203 PVDTVEM-SDIEWIARIL 219 + + D + + + Sbjct: 169 SEQIIPLKEDCILVGKYV 186 >gi|308187214|ref|YP_003931345.1| 26 kDa repressor protein (Regulatory protein CI) [Pantoea vagans C9-1] gi|308057724|gb|ADO09896.1| 26 kDa repressor protein (Regulatory protein CI) [Pantoea vagans C9-1] Length = 144 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + ++ + + QT + SM GD++ ++ ++ GD + Sbjct: 25 DVIRSIEYNADHARNFFGGKPQTTVKMVNVRGDSMSGTIEPGDLIFVDVSVTQFDGDGIY 84 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWASQ 223 + G I K L I ++S N Y ++ +++ SQ Sbjct: 85 VFGFDGKIHIKRLQIVPD-KIVVISDNTRYRDWFIDETNEHRFYIFGKVM-ISQ 136 >gi|260565880|ref|ZP_05836352.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260151001|gb|EEW86107.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] Length = 85 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 P + G +++++ V GD + + + K LI G+ L LN YP+ Sbjct: 7 PSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN 65 Query: 209 MSDIEWIARILWASQ 223 + +++ ASQ Sbjct: 66 -ESCSVVGKVI-ASQ 78 >gi|11640727|gb|AAG39346.1| RulA [Pseudomonas syringae pv. syringae] Length = 141 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++++ Sbjct: 19 CTFKIPAGFPNPAA-DHIEQDFSYDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + + K+LI + G + L S N YP V + I ++ Sbjct: 76 DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRQVLEGEELSIWGVV 133 >gi|88608081|ref|YP_506392.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama] gi|88600250|gb|ABD45718.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama] Length = 194 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 64/214 (29%), Gaps = 37/214 (17%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + E + LA +AG+ + G+++ P+++ + I + Sbjct: 5 IRKRMEEIGINARELAERAGVGKSFVYDILN----GKSKNPTSKKLNSISRELGIS---- 56 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPEIRSPHNGI 130 + Y P + N V R+ Sbjct: 57 -------------------ISYLINVSPDSIDYENYLPVHSLDNQLGVSFLFNRTFCEEH 97 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD----RLLIKPRTGDIVAKVLI 186 + ++ D SMLP +ILI+ + GD + + + + + + Sbjct: 98 ISETSKLYSCTMYDDSMLPSIMPNEILII---KKFIQGDRMKSGVFLIRDKFNSIVRSVE 154 Query: 187 SR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + N Y +I+ I +++ Sbjct: 155 HIFGSQDVKITPDNEKYSTYIKHFDEIDIIGKVI 188 >gi|256962518|ref|ZP_05566689.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256953014|gb|EEU69646.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|323481895|gb|ADX81330.1| LexA-like bifunctiol S24 family peptidase/transcriptiol regulator protein [Enterococcus phage EF62phi] Length = 244 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 68/218 (31%), Gaps = 29/218 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I ++A+ N+ P L + D ++ + S K+ + Sbjct: 46 ENIIKIADGLNMKPEDLLNLSNEDSDIISRITTILNQ-------LTSDRKLAVLNSAMQQ 98 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + +K + L +G G P T+ +PE P + Sbjct: 99 LKEQKQEKNNVISLPVKKSVNLYGIMTAGYGTINYDKCQP----IETIEIPENDIPKDYD 154 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 A + SM P Y G I+ + ++ G G+ K + + Sbjct: 155 LA-------FRVSGDSMYPTYEDGQIIFVRKQSEIEQGMIG-CVEINGNAFIKRIYKEKD 206 Query: 191 RSIDLMSLNCC--------YPV-DTVEMSDIEWIARIL 219 + +S N +P T E +I I +++ Sbjct: 207 -RLRFVSFNTDVDKDGNRLFPDFYTSETDEIYIIGKVV 243 >gi|253999814|ref|YP_003051877.1| LexA repressor [Methylovorus sp. SIP3-4] gi|253986493|gb|ACT51350.1| LexA repressor [Methylovorus sp. SIP3-4] Length = 196 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 4/102 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + S + + +Q + SM+ D++I+ N GD ++ Sbjct: 91 DRHDTLSIDDYLIERPSQTVLITVKGDSMIDAGIVPDDVVIVEKRQVANVGDIVVAIVD- 149 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L +G+ L+ N YPV ++E ++ Sbjct: 150 NEFTLKTLGREKGQ-FVLLPANKAYPVIR-PQGNLEIFGVVV 189 >gi|330974080|gb|EGH74146.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 141 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 8/122 (6%) Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 + P G + + + A K SM ++ Sbjct: 16 IPCYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +++ + + + G ++ + + K+LI + G + L S N YP + + I Sbjct: 74 VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131 Query: 218 IL 219 ++ Sbjct: 132 VV 133 >gi|15602282|ref|NP_245354.1| hypothetical protein PM0417 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720669|gb|AAK02501.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 216 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 5/99 (5%) Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 G + SMLP GD+L++N + + + + + K Sbjct: 112 DWLTGRGITADKLVFVSATGDSMLPTIHHGDLLLINREVNSAKEEGIYVIRSGKQVWIKR 171 Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARIL 219 + I LMS N YP + +E I +++ Sbjct: 172 IQGLPNG-IRLMSDNKTLYPPIDLSFEQYHALEIIGKVI 209 >gi|303255702|ref|ZP_07341749.1| hypothetical protein CGSSpBS455_09407 [Streptococcus pneumoniae BS455] gi|302597374|gb|EFL64473.1| hypothetical protein CGSSpBS455_09407 [Streptococcus pneumoniae BS455] gi|321157093|emb|CBW39080.1| Putative phage repressor protein [Streptococcus phage 34117] Length = 268 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 62/264 (23%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M FS ++ + N + L+R G+ P++ + P ++ K Sbjct: 16 MKVFS-----ANLNSILSDRNCKQAELSRATGIPPSTLTGYVKGTS-----LPIPGNVQK 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEK----------------KEKEIPLLYFPPSGSGGFF 104 I L ++ + ++ +L + Sbjct: 66 IADFFGVPKSVLDPRFVTNNSMVDDSSSNTSSIQTIYDQLEPPRQGKVLNYAKRQLKEQR 125 Query: 105 DSGVFPTGNKWNTV----------------------------GVPEIRSPHNGIYAIQTQ 136 + + + S + Sbjct: 126 NEEETKINEVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYD 185 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 SM P + GD L + + QV+ + + G K L + L Sbjct: 186 AIA-YVVGNSMEPKIKNGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLE 238 Query: 197 SLNCCYPVDTVEMS-DIEWIARIL 219 SLN Y ++ S DI I ++ Sbjct: 239 SLNPDYEDIHLDESNDIRTIGEVV 262 >gi|257485801|ref|ZP_05639842.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130256|ref|ZP_07256246.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012897|gb|EGH92953.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 141 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 8/122 (6%) Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 F + P G + + + A K SM ++ Sbjct: 16 IPFYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +++ + + + G ++ + + K+LI + G + L S N YP + + I Sbjct: 74 VVDRSRKPSSGSIVIAAVN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131 Query: 218 IL 219 ++ Sbjct: 132 VV 133 >gi|152987517|ref|YP_001345496.1| protein MucA [Pseudomonas aeruginosa PA7] gi|150962675|gb|ABR84700.1| protein MucA [Pseudomonas aeruginosa PA7] Length = 147 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 6/107 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172 + + S + SM GDIL+++ +I G ++ Sbjct: 35 AEDHIE--ASLSLDELCVVHPAATFFLRVVGDSMTGLGIFDGDILVVDRSITPRAGMVVV 92 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+ K L + L + N YP + + D+E + Sbjct: 93 AVVN-GEFTCKQLAY-EHGAPVLRAANKAYPDIRLRDGEDLEVFGVV 137 >gi|325913376|ref|ZP_08175743.1| LexA repressor family protein [Lactobacillus iners UPII 60-B] gi|325477302|gb|EGC80447.1| LexA repressor family protein [Lactobacillus iners UPII 60-B] Length = 157 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 7/124 (5%) Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 ++ P + N + + + KT+ SM Sbjct: 24 NTDTVVKQIPLLGDIACGDPITADENIEDYIP-----ETYTRGNVPSGTLFALKTKGHSM 78 Query: 148 LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 P G I+I+ V G+ ++ K + ++ L N Y Sbjct: 79 EPTIPDGSIVIIRQQPNVEDGEIAAVLVDDDARATLKRI-KHSNDAVILQPDNREYDPIV 137 Query: 207 VEMS 210 + + Sbjct: 138 LTPN 141 >gi|257886429|ref|ZP_05666082.1| prophage pi1 protein 03 [Enterococcus faecium 1,231,501] gi|257822285|gb|EEV49415.1| prophage pi1 protein 03 [Enterococcus faecium 1,231,501] Length = 167 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193 + K + SM+P +++ V G+ +I + K + + Sbjct: 76 GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 134 Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222 LM N Y ++ ++ + + + S Sbjct: 135 MLMPDNNDYHPYIIDENNPARILGKAVKVS 164 >gi|260844567|ref|YP_003222345.1| putative repressor protein [Escherichia coli O103:H2 str. 12009] gi|257759714|dbj|BAI31211.1| putative repressor protein [Escherichia coli O103:H2 str. 12009] Length = 199 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 21/190 (11%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTT 83 L G S ++ G +R+ S S+ KIL N + + Sbjct: 9 KDLVNATGASKGSVSQWINGGGAPSSRYIS--SLAKILKVNENWLLNGGELNTGDSLDLS 66 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 K +PLL + S + + I S + I + Sbjct: 67 LPPIKTVPLLSLQQAASWS-------------DYMKNSSITSCVQLVGEIPANTFAVVLE 113 Query: 144 DTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM G + ++ V G+ +L P+ + G I L+ Sbjct: 114 SDSMSTSGGGVSIPNGSTVFVDPNRTVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPT 173 Query: 199 NCCYPVDTVE 208 N YP ++ Sbjct: 174 NPRYPSIMLD 183 >gi|229528417|ref|ZP_04417808.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] gi|229334779|gb|EEO00265.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] Length = 145 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 4/137 (2%) Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + P G N T + R N + + Sbjct: 2 PSLMDEFVMIPGYRIQVSAGHGALNPENMEPTRYLAFRRKWLNYRGFNEKDLAIVWAKGD 61 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 SM P D L+++ A + I ++ K S + L+S N Y Sbjct: 62 SMEPTIHNNDTLVVHMARNKPQDGHIYIFRNGDELFVKRYQSML-GTWRLISDNAFYSPV 120 Query: 206 TVEMSD---IEWIARIL 219 + + + + +++ Sbjct: 121 DIPKQEQHQFDVVGQVV 137 >gi|172036814|ref|YP_001803315.1| SOS function regulatory protein [Cyanothece sp. ATCC 51142] gi|171698268|gb|ACB51249.1| SOS function regulatory protein [Cyanothece sp. ATCC 51142] Length = 200 Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 8/184 (4%) Query: 41 SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 I PS + K + + Q + + E + L Sbjct: 14 WLIKYINDNQHAPSIRQMMKAMNLRSPAPVQSRLERLRNKGYIDWTEGKARTLRILHHQP 73 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSM-LPLYRKGDILI 158 G G G + + + + I + + SM L GD+ I Sbjct: 74 KGVPILGAIAAGGLVE--PFTDEQERLDLSHLIHANNYWGLRVTGDSMIEDLITDGDLAI 131 Query: 159 L---NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + + + G+ + + K + G + L N Y V+ + IE Sbjct: 132 MRSLDPDETLKNGEIVAARVEGVGTTLKRFY-QEGEIVMLKPSNLNYQPIEVKANQIEVQ 190 Query: 216 ARIL 219 ++ Sbjct: 191 GILV 194 >gi|71725310|ref|YP_272258.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558900|gb|AAZ38109.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. phaseolicola 1448A] Length = 141 Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 8/122 (6%) Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 + P G + + + A K SM ++ Sbjct: 16 IPCYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +++ + + + G ++ + + K+LI + G + L S N YP V + I Sbjct: 74 VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHVLEGEELSIWG 131 Query: 218 IL 219 ++ Sbjct: 132 VV 133 >gi|323345117|ref|ZP_08085341.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323094387|gb|EFZ36964.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 235 Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 20/212 (9%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 S A+ G+ PT +G+ PS + I KI A N + LL ++ Sbjct: 18 NQSAFAKAIGVTPTVIANVV-GTRQGK---PSFDVITKICANANVSAEWLLTGEGDMLKS 73 Query: 83 TEKKEKEIPLLYFP-------PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 ++ + + G + + I + Sbjct: 74 VREEPQVEVKPIHQPRSTEKKEETQVVYLYDFEASAGLRSLFDNSRQNIIDTIKIPNLPK 133 Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNC----GDRL---LIKPRTGDIVAKVLISR 188 D SM PL + GDI++ G+ IV K + Sbjct: 134 CDGAIHIVGDSMYPLLKSGDIILYKQMPLDINNLLYGEMYLLSYDIDGDDYIVVKYIRKS 193 Query: 189 RGRS--IDLMSLNCCYPVDTVEMSDIEWIARI 218 I L S N + ++ + +A + Sbjct: 194 DKGEPYITLESENPAHAPRDIDFHRVTALALV 225 >gi|291514512|emb|CBK63722.1| SOS response UmuD protein. Serine peptidase. MEROPS family S24 [Alistipes shahii WAL 8301] gi|313157456|gb|EFR56877.1| peptidase S24-like protein [Alistipes sp. HGB5] Length = 146 Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 8/117 (6%) Query: 98 SGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + G +++ P + + + SM + Sbjct: 16 APLEVPLMDSGVHAGFPSPADDSIEQP--LDLNKLVAPNPNATFFARVVGDSMKDAHIEE 73 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD+L ++ + GD ++ G+ K + + + + L+ N Y V Sbjct: 74 GDLLAVDKSADPLDGDVVVSFID-GEFTLKTIRFKGAQ-VWLVPANEKYKPIEVTTD 128 >gi|159528101|ref|YP_001542664.1| hypothetical protein pLDTEXKL_p06 [Fluoribacter dumoffii] gi|159157946|dbj|BAF92635.1| hypothetical protein [Fluoribacter dumoffii] Length = 219 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 75/213 (35%), Gaps = 25/213 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + +++NL L R G+ ++ + + P+ + + K+ + T Sbjct: 3 IGDVLSELLKKYNLNALELERLTGVPSSTIYRLLKDKGG----NPTIDVLKKLSSFFQVT 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + QL+ + + F F + ++V + Sbjct: 59 VSQLIG----------EDPIGCKQIPFIKPMDIFCFLDSSQDRNLEIDSVPID------- 101 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + ++ +QD M P I+I++ ++ D +L+ + I Sbjct: 102 --FPLSSKCFATLSQDNMMEPFILVNSIVIVDPERKITNKDFVLLIKSKNEKPIIRQIIS 159 Query: 189 RGRSIDLMSLNCCYPVD--TVEMSDIEWIARIL 219 G L LN +PV+ + + + +I I+ Sbjct: 160 DGDDFYLKVLNSNFPVELKKINLKNYFFIGVIV 192 >gi|156147117|gb|ABU53702.1| cje0215 [Campylobacter phage CGC-2007] Length = 113 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 3/109 (2%) Query: 112 GNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 G + + E+ + + + SM PL + G I +++ Sbjct: 1 GGINDLIDCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKAFKNKSI 60 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K ++ + I L SLN Y + D I ++ Sbjct: 61 CV-INTRDGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 107 >gi|229522610|ref|ZP_04412026.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae TM 11079-80] gi|229340595|gb|EEO05601.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae TM 11079-80] Length = 145 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 4/137 (2%) Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + P G N T + R N + + Sbjct: 2 PSPMDEFVMIPGYRIQVSAGHGALNPENMEPTRHLAFRRKWLNYRGFNEKDLAIVWAKGD 61 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 SM P D L+++ A + I ++ K S + L+S N Y Sbjct: 62 SMEPTIHNNDTLVVHMARNKPQDGHIYIFRNGDELFVKRYQSML-GTWRLISDNPIYDKL 120 Query: 206 TVEMSD---IEWIARIL 219 + + + + +++ Sbjct: 121 DIPKQEQHQFDVVGQVV 137 >gi|83815365|ref|YP_445303.1| LexA repressor [Salinibacter ruber DSM 13855] gi|294507178|ref|YP_003571236.1| LexA repressor [Salinibacter ruber M8] gi|83756759|gb|ABC44872.1| LexA repressor [Salinibacter ruber DSM 13855] gi|294343506|emb|CBH24284.1| LexA repressor [Salinibacter ruber M8] Length = 216 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 8/173 (4%) Query: 52 WPSTESIFKILAA-TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 WP+ I + ++ Q L G T + + G G+ Sbjct: 27 WPTYREIIDHFGYNSPNSVTQNLKALHRKGHLTRDDQGYHLATRYQEQEEPGIPVKGIIS 86 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169 G V + ++ Q + SM R GD ++L G Sbjct: 87 AGTLQEAVEADLGTITLDMLFPNLDQIFAIRVSGQSMRGANIRDGDYVLLIDEDIPEGGI 146 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219 ++ G+ K + + L N Y ++ ++ + R + Sbjct: 147 GAVL--YDGETSLKRVH-HDDEGLRLEPCNPEYDDIHIQPDVFEEVTILGRYV 196 >gi|33862653|ref|NP_894213.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9313] gi|33634569|emb|CAE20555.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9313] Length = 207 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 46/189 (24%), Gaps = 6/189 (3%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I + PS + + + + Q +E + L Sbjct: 15 QQELYDWLADYISSHHHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 74 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G T + R + + SM+ Sbjct: 75 LLGGLVSGIPVLGAVAAGGLVETFDDVQERLDLAPVLETRG-LFALTVNGDSMVDAYIAD 133 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++++ + G + K S+ L + N Y + Sbjct: 134 GDVVLMEPVPEPSRLRDGTVVSALVPGSGTTLKHFHRNGA-SVRLEAANTAYEPIELPAD 192 Query: 211 DIEWIARIL 219 ++ +++ Sbjct: 193 QVQVQGKLV 201 >gi|148378901|ref|YP_001253442.1| putative LexA repressor [Clostridium botulinum A str. ATCC 3502] gi|148288385|emb|CAL82462.1| putative serine peptidase [Clostridium botulinum A str. ATCC 3502] Length = 535 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM+ GD +++ D + G K L+ ++ ++ Sbjct: 446 KNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 504 Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216 LM N Y + I Sbjct: 505 -LMPENKKYKPIEILEEGASIIG 526 >gi|66043996|ref|YP_233837.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] gi|63254703|gb|AAY35799.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] Length = 144 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 3/117 (2%) Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165 P G V E + + ++ K SM+ D+++++ + Sbjct: 22 QVPAGFASPAVDYIEKHVSLDELAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRTA 81 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G+ ++ + + K L + L S + YP + D I ++ S Sbjct: 82 EHGEIVVAVLNNSEPICKRLF-MMDGGVKLQSEDSAYPSKHILEGDNLVIWGVVSYS 137 >gi|257889195|ref|ZP_05668848.1| prophage pi1 protein 03 [Enterococcus faecium 1,141,733] gi|257825267|gb|EEV52181.1| prophage pi1 protein 03 [Enterococcus faecium 1,141,733] Length = 167 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193 + K + SM+P +++ V G+ +I + K + + Sbjct: 76 GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 134 Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222 LM N Y ++ ++ + + + S Sbjct: 135 MLMPDNNDYHPYIIDENNPARILGKAVKVS 164 >gi|115376540|ref|ZP_01463773.1| LexA repressor [Stigmatella aurantiaca DW4/3-1] gi|310822049|ref|YP_003954407.1| LexA repressor [Stigmatella aurantiaca DW4/3-1] gi|115366473|gb|EAU65475.1| LexA repressor [Stigmatella aurantiaca DW4/3-1] gi|309395121|gb|ADO72580.1| LexA repressor [Stigmatella aurantiaca DW4/3-1] Length = 221 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 51/220 (23%), Gaps = 26/220 (11%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + ++I I + E P+ + G + R ST + Sbjct: 1 MEELTDRQREILSFIVKETELRGFPPT---------------IREIGEQMDIR--STNGV 43 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGN---K 114 L A S K+ + + L G G Sbjct: 44 NDHLKALERKGYLNRGEQQSRSLVPTKRARMLLGLGTKKDSGMVEVPLLGKVAAGAPLLA 103 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLI 173 + A + + + SM+ GD L + GD ++ Sbjct: 104 QENMEDSVKIDSFLLGGAGGREVFALRVKGQSMIDDGIHDGDYLFVRKTPAAQPGDIVVA 163 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 + K G I N V +D Sbjct: 164 LI-EDEATVKRYYP-EGERIRFQPANATMSPIYVNKADFR 201 >gi|331011638|gb|EGH91694.1| peptidase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 171 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 53/182 (29%), Gaps = 18/182 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ +A + G+ P + R P E I + L I Sbjct: 1 METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134 G + + Y P S P S I Y + Sbjct: 56 SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109 Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189 + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVEDA 169 Query: 190 GR 191 GR Sbjct: 170 GR 171 >gi|91204821|ref|YP_537176.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Rickettsia bellii RML369-C] gi|157826391|ref|YP_001495455.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Rickettsia bellii OSU 85-389] gi|91068365|gb|ABE04087.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Rickettsia bellii RML369-C] gi|157801695|gb|ABV78418.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Rickettsia bellii OSU 85-389] Length = 139 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 5/98 (5%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++ + + SM+ R+ D+LI++ ++ ++ + Sbjct: 39 SLDLNSHLIKHPKSTFFVQVTGDSMIDAGIRENDLLIVDKSLPPTNNKIVIAVIN-NEFT 97 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L + LM N +P +E +I ++ Sbjct: 98 VKRLKFINDEAY-LMPENKDFPPTKIENG--TYIWGVV 132 >gi|148241141|ref|YP_001226298.1| SOS-regulated protein [Synechococcus sp. RCC307] gi|147849451|emb|CAK26945.1| Bacterial UmuD protein homolog (SOS-regulated protein) [Synechococcus sp. RCC307] Length = 121 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 5/97 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + A + SM GD+L+++ ++Q G ++ Sbjct: 12 ADDYLE--AGVDLNRQLIARPLSTFLLQVSGDSMLADGIHHGDLLLVDRSLQPQPGRVVV 69 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 G K L G + L + + YP ++ Sbjct: 70 AVLD-GAFTLKRLECH-GGRLRLQAAHPGYPPLELDA 104 >gi|11640739|gb|AAG39352.1| RulA [Pseudomonas syringae pv. tomato] Length = 141 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 8/122 (6%) Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 F + P G + + + A K SM G ++ Sbjct: 16 IPFYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHGSLV 73 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +++ + + + G ++ + + K+LI + G + L S N YP + + I Sbjct: 74 VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131 Query: 218 IL 219 ++ Sbjct: 132 VV 133 >gi|294789897|ref|ZP_06755123.1| peptidase, S24 (LexA) family [Simonsiella muelleri ATCC 29453] gi|294482187|gb|EFG29888.1| peptidase, S24 (LexA) family [Simonsiella muelleri ATCC 29453] Length = 253 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 13/174 (7%) Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--- 115 + + I +P + + ++ + + GN + Sbjct: 75 AVVAPKAVQPIQPTQPVPDFMRQMVSEYDEWAKSQDISAIVPVRYHTNVFGSAGNGYAML 134 Query: 116 NTVGVPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + V + + + ++ + + SM P ++ + V + + Sbjct: 135 DNVNTESMWFRASFFDVLGVPPSRCFCTRVKGDSMHPTIIDRGTVM-WAMQSVYTSEGIY 193 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI-----EWIARILW 220 + + ++ K L + ++S N YPV+T+++ ++ E R LW Sbjct: 194 LFRQVNELRIKRLQRVNSHTYRIISDNKAFYPVETLDLREMESHEFEIYGRYLW 247 >gi|262043104|ref|ZP_06016243.1| DNA polymerase V subunit D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039555|gb|EEW40687.1| DNA polymerase V subunit D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 139 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ +GD+L+++SA + + GD ++ Sbjct: 32 DYVE--KRIDLNELLVQHPSATYFVKAAGDSMIDAGIDEGDLLVVDSARKADHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 G+ K L + L +N Y V + ++ + Sbjct: 90 -VGGEFTVKKLQLLP--RVQLNPMNPAYSPIVVGREETLDIFGVV 131 >gi|227822462|ref|YP_002826434.1| putative phage repressor [Sinorhizobium fredii NGR234] gi|227341463|gb|ACP25681.1| putative phage repressor [Sinorhizobium fredii NGR234] Length = 241 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 56/226 (24%), Gaps = 26/226 (11%) Query: 11 EAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRF-------GIEGRNRWPSTESI---- 58 E + + S A G+ +++ + + R + + + Sbjct: 18 ERLRQARINARYRFASDAANALGIVASTYRAHENGQNEFDFAEAKIYARKFNVDPVWLMG 77 Query: 59 -FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + G D G + Sbjct: 78 EAADAETGGPIPIPKPAEVDPPNAGPPTKLVGPGKKIPVFGQAVGGVDGEFLMNGTVLHE 137 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 V P I S + YA SM P Y G++ ++ +V GD ++ + R Sbjct: 138 VLAPPILSDISDAYA-------VSVSGDSMYPRYEDGEVCFVDPGRRVRKGDYVIAQIRL 190 Query: 178 GD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + + L N E + + I Sbjct: 191 EEGGALLAYVKKFVRHNSSELVLEQFNPQ-KELRFEARTVHSVHYI 235 >gi|259418034|ref|ZP_05741953.1| putative phage repressor [Silicibacter sp. TrichCH4B] gi|259346940|gb|EEW58754.1| putative phage repressor [Silicibacter sp. TrichCH4B] Length = 238 Score = 65.2 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 31/220 (14%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 EA++ L+ LA KAG+ K +G+ + + E +I AA + Sbjct: 36 EALNGAMSASGLSMRKLAEKAGVSYEQLKKI----NQGKTQSTNAEDALRIAAALGIS-- 89 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 S + I + +G+ + G+ + P S Sbjct: 90 -----LESFMAGEFEGTPTIAIAGKVGAGASVPVFDA-YAKGDGPQVI-CPPGLS----- 137 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-----IQVNCGDRLLIKPRTGDIVAKVL 185 + + + SM P+Y GD+L + G R + + G K + Sbjct: 138 ---PSGVVAVEVEGDSMEPVYSAGDLLFYSRNGHDSVPSDVIGHRCVCEDEEGMGWVKQV 194 Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL--WAS 222 + L+SLN + ++W AR+ W S Sbjct: 195 KAGDEPGLFHLISLNPGANNIW--NTRLKWAARVRLHWPS 232 >gi|11640737|gb|AAG39351.1| RulA [Pseudomonas syringae pv. syringae] Length = 141 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 8/130 (6%) Query: 94 YFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + SG + P G + + + A K SM Sbjct: 8 WLCESGKVIPLYTFKIPAGFPNPAADHIEHDFSFDRLMDLRA--PHIYVAKIDGDSMEGA 65 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 +++++ + + + G ++ + V K+LI + G + L S N YP + Sbjct: 66 KIFHDSLVVVDRSRKPSSGSIVIAALN-NEPVCKILILQ-GDHVVLKSANPAYPPRHILE 123 Query: 210 SDIEWIARIL 219 + I ++ Sbjct: 124 GEELSIWGVV 133 >gi|15807742|ref|NP_285397.1| hypothetical protein DR_A0074 [Deinococcus radiodurans R1] gi|6460658|gb|AAF12364.1|AE001862_190 hypothetical protein DR_A0074 [Deinococcus radiodurans R1] Length = 240 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 17/178 (9%) Query: 13 IDRMAERHNLT-PSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAATNETI 69 I + NL+ A AG+ TS + R G PS +++ K+ A ++ Sbjct: 38 IAERMRQLNLSTVKDFADYAGIGRTSIHDLVRGRTTTSGTWTKPSFDTLTKLAVALDKPT 97 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +LL L + + + G + Sbjct: 98 HELLYLIDPEAPGANLMFDVQQVPVYIAGQ-----------VGAGPQQLWESSDVVYVER 146 Query: 130 IYAIQTQDTRHKTQDTSML---PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 +A SM GD++I++ + ++ + + V K Sbjct: 147 QFAENRDLIAFTVVGDSMAGGRHPIHDGDVVIVDQRVGGEVNFPVVARLKDDGHVVKR 204 >gi|29171480|ref|NP_808664.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. tomato str. DC3000] gi|301385605|ref|ZP_07234023.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. tomato Max13] gi|302063655|ref|ZP_07255196.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. tomato K40] gi|28855973|gb|AAO59030.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. tomato str. DC3000] Length = 141 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 8/122 (6%) Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 F + P G + + + A K SM ++ Sbjct: 16 IPFYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +++ + + + G ++ + + K+LI + G + L S N YP + + I Sbjct: 74 VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131 Query: 218 IL 219 ++ Sbjct: 132 VV 133 >gi|317403636|gb|EFV84124.1| hypothetical protein HMPREF0005_02866 [Achromobacter xylosoxidans C54] Length = 131 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 38/129 (29%), Gaps = 6/129 (4%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 G G E + Y + SM PL+ GD L+++ Sbjct: 1 MGPGLELRDQPGVIQAWHVSSEWLRKNVPSYTQKENLCIVTGFGDSMRPLFNPGDPLVVD 60 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS---IDLMSLNCCYPVDTVEMS-DIEWIA 216 ++ D + K L + S I S N Y + D E Sbjct: 61 RGVRSVDFDAVYFFRVGTQGFIKRLQTIPTESGFVIRAKSENTKYDSWDITEKMDFEVFG 120 Query: 217 RI--LWASQ 223 R+ +W SQ Sbjct: 121 RVLKVWCSQ 129 >gi|310828218|ref|YP_003960575.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] gi|308739952|gb|ADO37612.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] Length = 197 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 25/187 (13%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ + NL+ + LA + G+ T+ ++ + +P +I ++ + T LL Sbjct: 5 RQLRKERNLSQANLAERLGVSQTAVSQWETDKN-----YPDINTIKQLADIYSVTTDYLL 59 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + S + + + P G +W + Sbjct: 60 GVDSSRLKKDNEIVVYTRV-----------------PAGVEWANIEERAGYEELGVKMLE 102 Query: 134 QTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + K D M P++ K D+LI+ G+ L++ D K + + Sbjct: 103 NGKTYVGFKVSDDEMAPVFLKDDVLIIEVRDNCEDGEIALVQVSGYDAEIKYVFMQPNGV 162 Query: 193 ID--LMS 197 + L+ Sbjct: 163 LVQPLVP 169 >gi|227511733|ref|ZP_03941782.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085053|gb|EEI20365.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 241 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 25/229 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILA------ 63 E + + ++H+L+ + LA + G S ++ + + E I + Sbjct: 4 ENLRYLRKKHHLSQTTLAHRLGRKSVASVSEWESGKYT--PQLAIIEKIATLFNVDVADL 61 Query: 64 --------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---- 111 ++ + +S +++ +L + P Sbjct: 62 LYRELGKANDPKSRSESFLSMYSKLTPDRQQKVYQRILELKQAEPEDDQTPIELPVTVLK 121 Query: 112 -GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + E D K +SMLP + I+ + +A + G Sbjct: 122 LEKTDLAITDEEESVNRPQKAGKPNFDFAVKIIGSSMLPKFCDQQIVFVTAAAKAENGQ- 180 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218 +++ G + + LM N ++ D I + Sbjct: 181 VVLVKVDGKPYIRRYEKTSEGA-WLMPFNQDEAQVKIQYDTDFRLIGVV 228 >gi|325271359|ref|ZP_08137887.1| putative prophage repressor [Pseudomonas sp. TJI-51] gi|324103481|gb|EGC00800.1| putative prophage repressor [Pseudomonas sp. TJI-51] Length = 142 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 F FP+ + + + A + + SM+ G Sbjct: 13 AKLPLFSFHVPAGFPSPAA-DHLEKRISLDELLDVRA--PHIYLVRVEGDSMIGAGIYPG 69 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 D++I++ +I+ G ++ + + K L G + L S N YP + + Sbjct: 70 DLVIVDRSIEAEPGHIVIAAVNC-EPLCKRLARD-GSQVVLKSENPRYPSRYLLEGEELQ 127 Query: 215 IARILWAS 222 + ++ S Sbjct: 128 VWGVVTYS 135 >gi|39653678|ref|NP_945243.1| cI repressor [Streptococcus phage EJ-1] gi|38638846|emb|CAE82086.1| cI repressor [Streptococcus phage EJ-1] Length = 267 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 64/263 (24%), Gaps = 61/263 (23%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M FS ++ + N L+R G+ ++ + P ++ K Sbjct: 16 MKVFS-----ANLNAILSDRNCKQVELSRATGIPASTLTGYVKGTS-----LPIPGNVQK 65 Query: 61 ILAATNETICQLLDLPFSDGR---------------TTEKKEKEIPLLYFPPSGSGGFFD 105 I L S+ ++ +L F + Sbjct: 66 IADYFGVLKSTLDPRFASEDPSIEITPTTSPIQSIYDQLAPPRQGKVLTFAERQLDEQKN 125 Query: 106 SGVFPTGNKWNTV----------------------------GVPEIRSPHNGIYAIQTQD 137 + + S + Sbjct: 126 EDKTKVNEVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDNYDA 185 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 SM P + GD L + + QV+ + + G K L + L S Sbjct: 186 IA-YVVGNSMEPKIKNGDYLFIKNTPQVDYNTIGIFQVD-GANYVKKL-RQG----YLES 238 Query: 198 LNCCYPVDTVEMS-DIEWIARIL 219 LN Y ++ S DI I ++ Sbjct: 239 LNPDYEDIHLDESNDIRIIGEVV 261 >gi|329113888|ref|ZP_08242658.1| Prophage Repressor [Acetobacter pomorum DM001] gi|326696787|gb|EGE48458.1| Prophage Repressor [Acetobacter pomorum DM001] Length = 236 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 21/212 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I R L+ + AG+ + ++ G P E++ K+ Sbjct: 4 ELLLSRIADCLHRSELSETAACEAAGVGVNTIRHIRKRG-----HSPKIENLCKLAYFFG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 L+ G ++ + ++ ++ + G + V W V P Sbjct: 59 VPPAYFLEAAAVGGEASDGQMLQVQTVFVKGAVQAGRWKDAVEWAPTDWYPVYTPTNIRY 118 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKP---RTGD 179 N + + SM +Y G I+I G R+++ + Sbjct: 119 PN------VEKFGLLVRGDSMNKVYPDGSIVIAIKFSDIGSCPQIGQRVVVVRRSVDGFE 172 Query: 180 IVAKVLISRRGRSIDLMSL--NCCY-PVDTVE 208 K I L + Y ++ Sbjct: 173 ATVKKFDKDGKGRIILWPESFSPEYQQPIILD 204 >gi|18150867|ref|NP_542804.1| DNA replication and repair protein [Pseudomonas putida] gi|18077108|emb|CAC86744.1| ruvA [Pseudomonas putida] Length = 143 Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 5/107 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + P I A + + SM G +LI++ +I G + + Sbjct: 33 DYYEPPISLDELLNIRA--AHVFIVRVEGESMRDAGIFDGGVLIVDRSITPCSGQIV-LA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220 + K L G L S N Y T + + ++ + W Sbjct: 90 YVDNQPLVKRLAKAPGDGWLLESANPAYKTITPDEYASVDVFGVVTW 136 >gi|153930702|ref|YP_001393350.1| mutagenesis and repair protein MucA [Yersinia pseudotuberculosis IP 31758] gi|152958243|gb|ABS45705.1| mutagenesis and repair protein MucA [Yersinia pseudotuberculosis IP 31758] Length = 139 Score = 64.8 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 8/107 (7%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171 + + + H + +SM+ GD+L+++ ++ G + Sbjct: 33 AGYEENEL----NLHEYCVKHPAATYFLRVSGSSMVDARIHDGDVLVVDRSLTPEHGSIV 88 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + K LI R LM +N + + ++ + Sbjct: 89 IASID-NEFTVKRLILRPKPC--LMPMNSEFSPIYFDPDSLQIWGVV 132 >gi|300726615|ref|ZP_07060054.1| protein SamA [Prevotella bryantii B14] gi|299776102|gb|EFI72673.1| protein SamA [Prevotella bryantii B14] Length = 145 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 5/107 (4%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + E + + SM GD +I++ A++ + G ++ Sbjct: 31 EDYIHETLDFNRDYIRHPEASFYGDVEGDSMKDAGLLDGDRVIIDRAVEPHDGSIVVAWW 90 Query: 176 RTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 G K L R+ I+L N YPV V + + + ++ Sbjct: 91 D-GGFTMKFLDLTHRKDGYIELRPANPDYPVFKVKDPENFQIWGTVI 136 >gi|71910727|ref|YP_282277.1| phage transcriptional repressor [Streptococcus pyogenes MGAS5005] gi|71853509|gb|AAZ51532.1| phage transcriptional repressor [Streptococcus pyogenes MGAS5005] Length = 209 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 20/200 (10%), Positives = 51/200 (25%), Gaps = 15/200 (7%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 ++ + + ++ + + + + L P++ + K++ Sbjct: 4 VNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDPNYRLLTPYNQLTISNKEKVIGYS 63 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRH 140 + + + + Y D Sbjct: 64 ERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGYSYFGDGNFDVVFYDEQLEYDFAS 123 Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200 SM P Y G+++++ G + G K + + L+SLN Sbjct: 124 WVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWDGQTYIKKVFR-EDEGLRLVSLNK 181 Query: 201 CYPVDTVE-MSDIEWIARIL 219 Y + I +I+ Sbjct: 182 KYSDKFAPYSEEPRIIGKII 201 >gi|300724254|ref|YP_003713572.1| hypothetical protein XNC1_3411 [Xenorhabdus nematophila ATCC 19061] gi|297630789|emb|CBJ91458.1| hypothetical protein XNC1_3411 [Xenorhabdus nematophila ATCC 19061] Length = 203 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 20/211 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + LT S LA KAG+ + K T + + A Sbjct: 3 LADRLKEAMADKGLTQSALAEKAGMAQSMIWKLLSGKAA------KTGKLVDLAKALGVR 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L D S +T E I + P + VP S Sbjct: 57 PEWLSDGSGSKYQTGEADFAVIHDNRYVPIKIYEEEQETH-------ESFMVPA-LSELQ 108 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + ++ + +G ++I++ ++ D + + V + Sbjct: 109 THF---DSCRAYRITQNTGCAEAPEGTLIIVDKYEEIANDDLVYARIGDHYSV---YRYK 162 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +G S+ +S++ + SDIE + I+ Sbjct: 163 QGGSVGFLSVDDTRIPLIIISSDIEIVGVIV 193 >gi|254427731|ref|ZP_05041438.1| Peptidase S24-like domain protein [Alcanivorax sp. DG881] gi|196193900|gb|EDX88859.1| Peptidase S24-like domain protein [Alcanivorax sp. DG881] Length = 130 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 4/101 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + E + + SM+ GDILI++ +++ GD ++ Sbjct: 22 YLDEHLDLSRLCIRRPASTFLLRVEGDSMVDAGIFSGDILIVDRSLEAVAGDVVVASLD- 80 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K L + + L N Y + ++ + Sbjct: 81 GEFTVKELQLQP--TPMLKPRNPAYAPIPIGGEGVDLFGVV 119 >gi|229514823|ref|ZP_04404284.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae TMA 21] gi|229348803|gb|EEO13761.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio cholerae TMA 21] Length = 141 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 6/106 (5%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + G + + SM P D L+++ A + I Sbjct: 31 YLAFRRKWLNYRGF--NEKDLAIVWAKGDSMEPTIHNNDTLVVHMARNKPQDGHIYIFRN 88 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 ++ K S + L+S N Y + + + + +++ Sbjct: 89 GDELFVKRYQSML-GTWRLISDNAFYSPVDIPKQEQHQFDVVGQVV 133 >gi|298485466|ref|ZP_07003551.1| Error-prone repair protein UmuD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|11640725|gb|AAG39345.1| RulA [Pseudomonas savastanoi] gi|298160035|gb|EFI01071.1| Error-prone repair protein UmuD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 141 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++++ Sbjct: 19 YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + + K+LI + G + L S N YP + + I ++ Sbjct: 76 DRSRKPSSGSIVIAAVN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133 >gi|320201046|gb|EFW75630.1| hypothetical protein ECoL_01754 [Escherichia coli EC4100B] Length = 119 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189 + SM +G I++++ ++ G ++ + K L+ Sbjct: 24 EDSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVIDA 83 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GR L LN YP+ + + + I ++ Sbjct: 84 GRRF-LKPLNPQYPMIEINGN-CKIIGVVV 111 >gi|242279790|ref|YP_002991919.1| peptidase S24 and S26 domain protein [Desulfovibrio salexigens DSM 2638] gi|242122684|gb|ACS80380.1| peptidase S24 and S26 domain protein [Desulfovibrio salexigens DSM 2638] Length = 144 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 43/107 (40%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + + + SM+ ++GDIL+++ ++ + ++ Sbjct: 34 ADDYID--KKMDLNEHLISNKAATFLIRAYGDSMIDANIKEGDILVVDRSMDAHNNSIII 91 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K + +R + L+ N YP+ + + ++ Sbjct: 92 AIFN-GELTVKRI-KQRAGRLFLLPENPEYPLLEITEETSFEVWGVV 136 >gi|150799|gb|AAA98277.1| mucA [Plasmid pKM101] Length = 145 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H + + +SM GD+L+++ ++ + G ++ + K L Sbjct: 42 HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 100 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + R LM +N +PV ++ + I ++ Sbjct: 101 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 133 >gi|331663913|ref|ZP_08364823.1| repressor protein phage e14 [Escherichia coli TA143] gi|325496547|gb|EGC94406.1| e14 prophage; repressor protein phage e14 [Escherichia fergusonii ECD227] gi|331059712|gb|EGI31689.1| repressor protein phage e14 [Escherichia coli TA143] Length = 97 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDL 195 + SM+ YR GD++ ++ + GD ++ TG+ K LI + L Sbjct: 2 TYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-L 60 Query: 196 MSLNCCYPVDTVEMS-DIEWIARIL 219 +LN +P ++++ + I ++ Sbjct: 61 KALNPNWPEPYIKINGNCSIIGTVI 85 >gi|11640719|gb|AAG39342.1| RulA [Pseudomonas syringae pv. maculicola] Length = 141 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++++ Sbjct: 19 YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + + K+LI + G + L S N YP + + I ++ Sbjct: 76 DRSAKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133 >gi|153800437|ref|ZP_01955023.1| protein UmuD [Vibrio cholerae MZO-3] gi|124124063|gb|EAY42806.1| protein UmuD [Vibrio cholerae MZO-3] Length = 149 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + +M+ DIL+++ ++Q GD ++ Sbjct: 39 DYVE--QTLDLNELCIKRPAATFFVRVESDAMIDAGIHPDDILVVDRSVQAEHGDIVI-V 95 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G++ K L R + L+ N Y + +++E + Sbjct: 96 GIHGELTVKELQLRP--CVMLIPRNQVYEPIHIPEGTELEIFGVV 138 >gi|158422455|ref|YP_001523747.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329344|dbj|BAF86829.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 301 Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 58/235 (24%), Gaps = 41/235 (17%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + + + A G+ S +K + P T ++ KI Sbjct: 64 RRIREIRKNLGMNQAEFAAALGVSQGSVSKWE-----AAKEQPRTTALLKIAELAGLPSF 118 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + + + G + + P I P Sbjct: 119 SLFSGTDHNQKRQGGLRAVRVVGSIQS--GYGVEAPEWDEEQHFDLMLPTPPIWGPLELS 176 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--------------NCGDRLLIKPR 176 I + + + G +I GD +++ + Sbjct: 177 GWI--------VRGEEIWTNWPPGSYVIAAREADPDDVPQGFRPQKIPLQNGDVVVVSNK 228 Query: 177 TG---DIVAKVLISRRGRSIDLMSL-NC---CYPVDTVEMS-----DIEWIARIL 219 G ++ K ++ LM L N + + D E + ++ Sbjct: 229 IGHLYEVTLKRYFEYDEKTAGLMHLGNETGSAMRPININIGCINGPDFEILGLVI 283 >gi|261493124|ref|ZP_05989660.1| putative repressor protein CI [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496453|ref|ZP_05992836.1| putative repressor protein CI [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307886|gb|EEY09206.1| putative repressor protein CI [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311212|gb|EEY12379.1| putative repressor protein CI [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 279 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 60/200 (30%), Gaps = 16/200 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ + L+ + LA + + + R +I K+L L Sbjct: 83 EQRRKNLGLSQAELADEFEVSQATVGNWLSN-----RREADIYTIAKLLERLGIVDVVLH 137 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + L G + + + + S H ++ Sbjct: 138 TDATISLTSGIFDTNTPQLKVSAALKFRGQ---------DIGEKLTLEDELSLH--YFSQ 186 Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + + P G+ +++ ++ D +LIK + G + +VL++ R + Sbjct: 187 DVRAYAVRIDGEKLEPRIVSGEYIVVEPGAKLQSYDEVLIKLKDGRYMIRVLLTGRNKEW 246 Query: 194 DLMSLNCCYPVDTVEMSDIE 213 N + S IE Sbjct: 247 RYADPNTMQQDTDFDPSQIE 266 >gi|218887762|ref|YP_002437083.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758716|gb|ACL09615.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 231 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 24/237 (10%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + ++++E I T LA + +S + +KR + K+ Sbjct: 1 MSTFEEVFERIKLATNTR--TQVELAEVLDIRQSSISDAKRRNSVPS------DWYMKLF 52 Query: 63 AATNETICQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + + + L G S V Sbjct: 53 EKFGLNPDWLKKASGPMYLRTEQGYQPLDAPAAGMVLEDPARYGDPDAKSSVVTVHSMHC 112 Query: 116 NTVGVPEIRSPHNGIYAIQTQDT-----RHKTQDTSMLPLYRKGDILILNS-AIQVNCGD 169 ++ T + +SM PL RKG + +++ V G+ Sbjct: 113 EVTEQGGGPLKAISKLSVPQSYTGPSMQVVRMDASSMEPLVRKGAYVGIDTAQKNVVSGE 172 Query: 170 RLLIKPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + + K + + L S N +P + + + R+ W Q Sbjct: 173 LYGVYVPYEGVALKRIFLDAEKARFVLRSENPAHPEQYLPVDKHAERIVGRVAWVLQ 229 >gi|237801540|ref|ZP_04590001.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024400|gb|EGI04456.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 141 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++++ Sbjct: 19 YSFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + + K+LI + G + L S N YP + + I ++ Sbjct: 76 DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133 >gi|281420865|ref|ZP_06251864.1| UmuD protein [Prevotella copri DSM 18205] gi|281405157|gb|EFB35837.1| UmuD protein [Prevotella copri DSM 18205] Length = 152 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 9/107 (8%) Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 + + +I H + SM GD+ +++ I+ + G+ ++ Sbjct: 44 EGEIDLNDILVRHREA------TFYVRISGDSMQDAGILDGDLAVVDRQIEPSNGNFVIA 97 Query: 174 KPRTGDIVAKVLISRRGRSI-DLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + L+ N + V+ ++ I ++ Sbjct: 98 FVD-GEFTIKQFKIDESGTFGWLIPWNKNFSPIRVDETNRFMIWGVV 143 >gi|45597387|ref|NP_996677.1| phage repressor [Lactococcus phage phiLC3] gi|21617869|gb|AAK07510.2|AF242738_1 phage repressor [Lactococcus phage phiLC3] Length = 286 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 71/275 (25%), Gaps = 62/275 (22%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTES------- 57 +K + I + L+ LA+K G+ T+ + + + + Sbjct: 7 NKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAID 66 Query: 58 -------------------IFKILAATNETICQLLDLPFSDGRTTEKKEKE--------- 89 I KI + E +++ ++ + +EK+ Sbjct: 67 DFFPQTDSTRMNVSSILSEINKISSQLEEPRQKIVLNTATNQLDEQNQEKKKESKVIPIN 126 Query: 90 ----------------------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + Y P G G + V + P Sbjct: 127 KIPDDLPPYISRKILENFVMPTNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPV 186 Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVL 185 + + SM P G +++ + V+ G ++ K + Sbjct: 187 PAHFLSSARDYYWLMVDGHSMEPKIPYGAYVLIEAVPDVSDGTIGAVLFHDDCQATLKKV 246 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + L+S+N + + I + + Sbjct: 247 YHEID-CLRLVSINKEFKDQFATQDNPAAVIGQAV 280 >gi|187778023|ref|ZP_02994496.1| hypothetical protein CLOSPO_01615 [Clostridium sporogenes ATCC 15579] gi|187774951|gb|EDU38753.1| hypothetical protein CLOSPO_01615 [Clostridium sporogenes ATCC 15579] Length = 495 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM+ GD +++ D + G K L+ ++ ++ Sbjct: 406 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 464 Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216 LM N Y + I Sbjct: 465 -LMPENKKYKPIEILEEGASIIG 486 >gi|170730314|ref|YP_001775747.1| phage-related repressor protein [Xylella fastidiosa M12] gi|167965107|gb|ACA12117.1| phage-related repressor protein [Xylella fastidiosa M12] Length = 233 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 11/226 (4%) Query: 1 MTSFSHKKIWEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPST 55 MT + + R+ ++H+ + K ++ + G + + Sbjct: 1 MTFLNSATVALRRRRLKQWIQDQHDGVQAFFVEKISINQGELSGLLNGKKSFGEKKARTI 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E + + +T + + K + + + Sbjct: 61 EKLAGMPDNYLDTTEEEIPEKQKSSTFNIKTGNNYIRVDHIEAEAHMGQGRINEDLPEVI 120 Query: 116 NTVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 N+V P G + SM P G+ +++++ GD L + Sbjct: 121 NSVEFPPNYIRSLIGFLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLV 180 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218 K L R I + S++ YP + I R+ Sbjct: 181 NTGNGQQIKALH-DRNGYIYITSMDKALYPDFV--ADENTIIGGRV 223 >gi|156147292|gb|ABU53867.1| cje0215 [Campylobacter phage CGC-2007] Length = 111 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 3/105 (2%) Query: 116 NTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + E+ + + + SM PL + G I +++ + Sbjct: 3 DLIDCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-I 61 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K ++ + I L SLN Y + D I ++ Sbjct: 62 NTRDGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 105 >gi|71276790|ref|ZP_00653051.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Dixon] gi|71162412|gb|EAO12153.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Dixon] Length = 259 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 11/226 (4%) Query: 1 MTSFSHKKIWEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPST 55 MT + + R+ ++H+ + K ++ + G + + Sbjct: 27 MTFLNSATVALRRRRLKQWIQDQHDGVQAFFVEKISINQGELSGLLNGKKSFGEKKARTI 86 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E + + +T + + K + + + Sbjct: 87 EKLAGMPDNYLDTTEEEIPEKQKSSTFNIKTGNNYIRVDHIEAEAHMGQGRINEDLPEVI 146 Query: 116 NTVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 N+V P G + SM P G+ +++++ GD L + Sbjct: 147 NSVEFPPNYIRSLIGFLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLV 206 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218 K L R I + S++ YP + I R+ Sbjct: 207 NTGNGQQIKALH-DRNGYIYITSMDKALYPDFV--ADENTIIGGRV 249 >gi|15895069|ref|NP_348418.1| P-loop ATPase domain-containing fused to LexA-like protein [Clostridium acetobutylicum ATCC 824] gi|15024765|gb|AAK79758.1|AE007688_7 P-loop ATPase domain fused to LexA-like protein [Clostridium acetobutylicum ATCC 824] gi|325509207|gb|ADZ20843.1| P-loop ATPase domain fused to LexA-like protein [Clostridium acetobutylicum EA 2018] Length = 480 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 9/120 (7%) Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151 + P + + + +P K + SM+ Sbjct: 354 IEKIPIFNEIAAGEPILINSQIEDKFYLPRYWVKDA------KNCFILKIKGDSMINADI 407 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD +++ D + + G K L + I M N Y V + Sbjct: 408 NDGDCVVIKKTGAAENRDIVAVNID-GSATLKRLKMDKDG-IAFMPENELYSPIKVTEDE 465 >gi|54293137|ref|YP_125552.1| hypothetical protein lpl0176 [Legionella pneumophila str. Lens] gi|53752969|emb|CAH14405.1| hypothetical protein lpl0176 [Legionella pneumophila str. Lens] Length = 239 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 16/197 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + + E + ++ H ++ S LAR G+ + + + R + E + Sbjct: 27 MADMT---LSENLQQLMRIHGNISVSELARLTGIPQPTIHHILAGSTK-NPRKKALEELS 82 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + L KE + P P+G Sbjct: 83 RYFSVS----IDELIGQEPLPAVIPDAVKENLQISTIPVIKWESLKEW--PSGTARTQDT 136 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + I DTSM PL+++ +LI +S N D +++ Sbjct: 137 QEILIDK-----KIDKNSFALIMPDTSMEPLFQQNSLLIFDSGKAPNDRDFVIVHLSKEG 191 Query: 180 IVAKVLISRRGRSIDLM 196 I+A + + L Sbjct: 192 IIAFNRLFIENNTFYLR 208 >gi|148550233|ref|YP_001270335.1| putative prophage repressor [Pseudomonas putida F1] gi|148514291|gb|ABQ81151.1| putative prophage repressor [Pseudomonas putida F1] Length = 142 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 7/128 (5%) Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151 F FP+ + + + A + + SM+ Sbjct: 10 PSTTDLPLYSFQVPAGFPSPAA-DHLEKRISLDELLDVRA--PHIYLVRVEGDSMIGAGI 66 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMS 210 GD+++++ +I G ++ + + K L G + L S N Y +E Sbjct: 67 YPGDLVLVDRSISPEPGHIVIAAVNC-EPLCKRLAR-EGSQVVLRSENPRYSSRYLLEGE 124 Query: 211 DIEWIARI 218 ++E + Sbjct: 125 ELEIWGVV 132 >gi|15896492|ref|NP_349841.1| LacI/xre family transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15026320|gb|AAK81181.1|AE007820_7 Predicted transcriptional regulator, lacI/xre family [Clostridium acetobutylicum ATCC 824] Length = 243 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 20/223 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------- 59 + E + ++ E L+ A+K G+ N+ + R TES+ Sbjct: 23 NRAGEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECG------RKVVTESLIHRIKKLY 76 Query: 60 -KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--FDSGVFPTGNKWN 116 K + N + + ++ ++ + + +K+ + + S + + Sbjct: 77 GKDINDINMSADEEEEVRETNYQFKSQAKKKETNEVWTDALSSILKSVPVYDYSFKKVID 136 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +P I + G Q + K ++ M K D+ + ++ + Sbjct: 137 KRSLPVIANKIEGF--NQDKVFFIKIENNDMTGFRIMKDDVAFGHMTSEIENNAIC-LIE 193 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 V + + + L+S N TV+ ++I+ I RI Sbjct: 194 YNDLRVLRQIKRLDNNKLLLISNNGNLMTQTVQTNEIKIIGRI 236 >gi|332704668|ref|ZP_08424756.1| peptidase S24/S26A/S26B [Desulfovibrio africanus str. Walvis Bay] gi|332554817|gb|EGJ51861.1| peptidase S24/S26A/S26B [Desulfovibrio africanus str. Walvis Bay] Length = 249 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 74/241 (30%), Gaps = 33/241 (13%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLD--PTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +I ++R+A+ +P+ + R+ G+ ++ G P+ + + ++L Sbjct: 5 DEIRRGVERIAKNRYGSPTAMCRELGMASQQPKISRLL-----GTGSVPAADFVAELLDK 59 Query: 65 TNETICQLLDLPFS-------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--- 114 + + + D + + S G Sbjct: 60 LGVRLIWPDQVKDTAQEVVFIDYEVARTASAALRVTPKAEDYRAIPLTSEDVAAGPGLVP 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKT--QDTSMLPLYRKGDILILNSAI----QVNCG 168 +++ + H + K SM P+ GD ++++ G Sbjct: 120 EDSIQGWVLLWRHIPALMTRRNLVASKIGHNQRSMTPVLHPGDYIVIDRDDITVPDSPHG 179 Query: 169 DRLLIKPRTGDIVAKVLI---SRRGRSIDLMSLNCCYPVDTVEMSD-------IEWIARI 218 + L++ + K + + L S N YP D ++++ + R+ Sbjct: 180 NVFLVRDPHDGLAVKRVRVQSRAGHTMLVLYSENPEYPPDIIDLTADYDGDFGRAIVGRV 239 Query: 219 L 219 + Sbjct: 240 V 240 >gi|187251428|ref|YP_001875910.1| LexA family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186971588|gb|ACC98573.1| Transcriptional repressor, LexA family [Elusimicrobium minutum Pei191] Length = 201 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 47/171 (27%), Gaps = 7/171 (4%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-----DSG 107 S E + + + +++++ + + + Sbjct: 22 LSMEELAEEMDISSKSVVHHHIKQLEKKGYLIRNTTNPHYYQIKNPEEKVVYLPMYGMAK 81 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 P G + + + + + + +SM L D LI+ + Sbjct: 82 CGPEGTILDGTPTRIVPVDPGMVQFPIKKGFMVEAKGSSMEDLIHAKDWLIVEQSNTPKV 141 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 D ++ + + K G SI L+S N + + + + Sbjct: 142 NDIVV-CVNNEETMVKRFC-TEGDSIILISDNRKFIPIIADKGSFKVEGIV 190 >gi|11640735|gb|AAG39350.1| RulA [Pseudomonas syringae pv. syringae] Length = 141 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++++ Sbjct: 19 YSFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + + K+LI + G + L S N YP + + I ++ Sbjct: 76 DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEDLSIWGVV 133 >gi|261086745|gb|ACX54617.1| MucA [Escherichia coli] Length = 146 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H + + +SM GD+L+++ ++ + G ++ + K L Sbjct: 43 HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 101 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + R LM +N +PV ++ + I ++ Sbjct: 102 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 134 >gi|121998067|ref|YP_001002854.1| putative prophage repressor [Halorhodospira halophila SL1] gi|121589472|gb|ABM62052.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Halorhodospira halophila SL1] Length = 142 Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + SML + GD+L+++ A++ D ++ Sbjct: 35 DYVD--RALDLNELCIEHPAATYFVRAAGESMLGVGIHPGDVLVVDRALEARHRDIVIAA 92 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G++ K L R ++ L++ N +P + E +E + Sbjct: 93 W-QGELTVKRLELRP--TLRLVAENDAFPPIDIAEPEMLEIFGVV 134 >gi|124023614|ref|YP_001017921.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9303] gi|123963900|gb|ABM78656.1| SOS function regulatory protein, LexA repressor [Prochlorococcus marinus str. MIT 9303] Length = 198 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 46/189 (24%), Gaps = 6/189 (3%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I + PS + + + + Q +E + L Sbjct: 6 QQELYDWLADYIGSHHHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 65 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 G G G T + R + + SM+ Sbjct: 66 LLGGLVSGIPVLGAVAAGGLVETFDDVQERLDLAPVLETRG-LFALTVNGDSMVDAYIAD 124 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++++ + G + K S+ L + N Y + Sbjct: 125 GDVVLMEPVSEPSRLRDGTVVSALVPGSGTTLKHFHRNGA-SVRLEAANTAYEPIELPAD 183 Query: 211 DIEWIARIL 219 ++ +++ Sbjct: 184 QVQVQGKLV 192 >gi|229547200|ref|ZP_04435925.1| bifunctional S24 family peptidase/transcriptional regulator [Enterococcus faecalis TX1322] gi|229307649|gb|EEN73636.1| bifunctional S24 family peptidase/transcriptional regulator [Enterococcus faecalis TX1322] Length = 244 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 69/218 (31%), Gaps = 29/218 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I ++A+ N+ P L + D ++ + S K++ + Sbjct: 46 ENIIKIADGLNMKPEDLLNLSNEDSDIISRITTILNQ-------LNSDRKLVVLNSAKQQ 98 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + +K + L +G G P T+ +PE P + Sbjct: 99 LKEQKQEKNNVISLPVKKSVNLYGIMTAGYGTINYDKCQP----IETIEIPENDIPKDYD 154 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 A + SM P Y G I+ + ++ G G+ K + + Sbjct: 155 LA-------FRVSGDSMYPTYEDGQIIFVRKQSEIEQGMIG-CVEINGNAFIKRIYKEKD 206 Query: 191 RSIDLMSLNCC--------YPV-DTVEMSDIEWIARIL 219 + +S N +P T E +I I +++ Sbjct: 207 -RLRFVSFNTDVDKDGNRLFPDFYTSETDEIYIIGKVV 243 >gi|148825401|ref|YP_001290154.1| transcriptional regulatory protein [Haemophilus influenzae PittEE] gi|229844591|ref|ZP_04464731.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1] gi|148715561|gb|ABQ97771.1| transcriptional regulatory protein [Haemophilus influenzae PittEE] gi|229812840|gb|EEP48529.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1] Length = 127 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 5/112 (4%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 F G P S + + SMLP GD ++++ + + G Sbjct: 17 FNEGATEADGQEPYSDSLLCSLGVKAEKCAVFWANGNSMLPTINDGDQMLVDLSRKEIQG 76 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV---EMSDIEWIA 216 DR+ + + K + I L+S N YP ++ + ++ I Sbjct: 77 DRIYLVQNGESMWVKRV-KMEWDGISLISDNKEKYPPISITGKDAQHLQIIG 127 >gi|11640729|gb|AAG39347.1| RulA [Pseudomonas syringae pv. syringae] Length = 141 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++++ Sbjct: 19 YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIYGDSMEGAKIFHDSLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + V K+LI + G + L S N YP + + I ++ Sbjct: 76 DRSRKPSSGSIVIAALN-NEPVCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133 >gi|92114209|ref|YP_574137.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797299|gb|ABE59438.1| transcriptional regulator, XRE family with cupin sensor protein [Chromohalobacter salexigens DSM 3043] Length = 195 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 17/196 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + + ++ + +L+ LA++AG+ ++ + ++ + PS S+ KIL Sbjct: 1 MSGFDVGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNV-----SPSVSSLKKILD 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A +I + + + E + S + G P Sbjct: 56 AMPVSISEFFAGEETSPQEKFFYRAEELTEIGDGNLSWRLVAARHPSRGMSIIHEHYPPG 115 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + ++ S+ + + GD R Sbjct: 116 ADTGEEMLEHEGEEGGVVIAG-SIELTVNGDTQCL-------HAGDAYYFDSRLPH---- 163 Query: 184 VLISRRGRSIDLMSLN 199 + ++S N Sbjct: 164 RFRNPGDGDCVIVSAN 179 >gi|17530618|ref|NP_511216.1| MucA protein [IncN plasmid R46] gi|113706797|ref|YP_724516.1| MucA [Escherichia coli] gi|133756239|ref|YP_001096389.1| hypothetical protein pLEW517_p64 [Escherichia coli] gi|160431656|ref|YP_001551823.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica serovar Dublin] gi|209901089|ref|YP_002286871.1| MucA protein [Klebsiella pneumoniae] gi|215528103|ref|YP_002332908.1| MucA [Klebsiella pneumoniae] gi|297622210|ref|YP_003675762.1| MucA [Klebsiella oxytoca KOX105] gi|298206584|ref|YP_003717524.1| MucA [Escherichia coli] gi|302141632|ref|YP_003813091.1| MucA [Klebsiella pneumoniae] gi|61228215|sp|P0A275|MUCA_SALTY RecName: Full=Protein mucA; Contains: RecName: Full=Protein mucA' gi|61228216|sp|P0A276|MUCA_ECOLX RecName: Full=Protein mucA; Contains: RecName: Full=Protein mucA' gi|45761|emb|CAA34606.1| unnamed protein product [Plasmid R46] gi|216827|dbj|BAA14175.1| MucA protein [Escherichia coli] gi|4335689|gb|AAB36886.2| MucA protein [Plasmid pKM101] gi|17342655|gb|AAL13412.1| MucA protein [IncN plasmid R46] gi|109390533|gb|ABG33835.1| MucA [Escherichia coli] gi|110084074|gb|ABG49228.1| hypothetical protein [Escherichia coli] gi|159885525|dbj|BAF93128.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica serovar Dublin] gi|165928630|gb|ABY74398.1| MucA [Klebsiella pneumoniae] gi|209574246|gb|ACI63132.1| MucA protein [Klebsiella pneumoniae] gi|261086742|gb|ACX54615.1| MucA [Escherichia coli] gi|261086748|gb|ACX54619.1| MucA [Escherichia coli] gi|261086751|gb|ACX54621.1| MucA [Escherichia coli] gi|261086754|gb|ACX54623.1| MucA [Escherichia coli] gi|261086757|gb|ACX54625.1| MucA [Escherichia coli] gi|296033897|gb|ADG84860.1| MucA [Klebsiella pneumoniae] gi|296492029|gb|ADH29531.1| MucA [Klebsiella oxytoca KOX105] gi|296537989|gb|ADH30009.1| MucA [Escherichia coli O25b:H4 str. EC958] gi|296538040|gb|ADH30059.1| MucA [Escherichia coli O25b:H4 str. EC958] Length = 146 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H + + +SM GD+L+++ ++ + G ++ + K L Sbjct: 43 HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 101 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + R LM +N +PV ++ + I ++ Sbjct: 102 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 134 >gi|315929874|gb|EFV09035.1| Signal peptidase I, putative [Campylobacter jejuni subsp. jejuni 305] Length = 224 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 23/194 (11%) Query: 33 LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + P + + + + + KI N ++ + K Sbjct: 29 VKPNTLSTWRTRNTIP------YDLLMKISKEHNISLDAIFFDKMRIIDDILKLRYYTDA 82 Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR 152 G+ + + + + + + K SM P Sbjct: 83 AAAAGYGAINSQLE--------YTEIAISKKFACEALGLPPLAKLDIIKVIGDSMEPFIH 134 Query: 153 KGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTV 207 GD++ ++ + V GD ++ G+I K L+ + I L S+N Y V Sbjct: 135 SGDVIAIDVSKNKLDLVKNGDIVV-INLDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVV 193 Query: 208 EMSDI---EWIARI 218 + I E I + Sbjct: 194 NIEHINNAEIIGVV 207 >gi|330971911|gb|EGH71977.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 122 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 3/115 (2%) Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQVNC 167 P G V E + + ++ K SM+ D+++++ + Sbjct: 2 PAGFASPAVDYIEKHVSLDELAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRTAEH 61 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G+ ++ + + K L G + L S + YP + D I ++ S Sbjct: 62 GEIVVAVLNNSEPICKRLFMMGGG-VKLQSEDSAYPSKHILEGDNLVIWGVVNYS 115 >gi|11640721|gb|AAG39343.1| RulA [Pseudomonas syringae pv. phaseolicola] Length = 141 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++++ Sbjct: 19 YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGGKIFHDSLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + + K+LI + G + L S N YP V + I ++ Sbjct: 76 DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHVLEGEELSIWGVV 133 >gi|302595457|ref|YP_003829319.1| DNA-directed DNA polymerase activity protein [Escherichia coli] gi|302310345|gb|ADL14213.1| MucA [Escherichia coli] Length = 148 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H + + +SM GD+L+++ ++ + G ++ + K L Sbjct: 45 HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 103 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + R LM +N +PV ++ + I ++ Sbjct: 104 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 136 >gi|255020434|ref|ZP_05292500.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus ATCC 51756] gi|254970147|gb|EET27643.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus ATCC 51756] Length = 155 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172 + V H + A + SML GD+LI++ A+Q G ++ Sbjct: 44 ADDHVE--RSLDLHRHLLAHPDASFFLRISGDSMLAYGIHDGDLLIVDRAVQAKEGMIVV 101 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L G+ L+ N Y + + ++ Sbjct: 102 AALD-GELTVKRLGKHAGQP-ALLPGNDRYAPIPIREGQELVVWGVV 146 >gi|169634082|ref|YP_001707818.1| putative repressor protein from bacteriophage [Acinetobacter baumannii SDF] gi|169152874|emb|CAP01907.1| putative repressor protein from bacteriophage [Acinetobacter baumannii] Length = 260 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 30/256 (11%), Positives = 67/256 (26%), Gaps = 57/256 (22%) Query: 1 MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M++ +++ AI + LAR AG+ + + ++ Sbjct: 1 MSTL-QERMSLAIKHYESETGKRFKNTELARFAGVSRANVGLWVNGPTQ----ELEGSNL 55 Query: 59 FKILAATNETICQLLDLPFSDGR------------------------------------- 81 K + L Sbjct: 56 VKAAEFLGVSKDWLAGQSNKMIATQLDGGGAQLNVLDIEAFKQKYNIPDSEEAVKFVQTP 115 Query: 82 --TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139 +++ +P+ + G G+F + V + + Sbjct: 116 TKPFPIQKRYVPVKAYSKIGMDGYFTDMGYDGNAGDGYVPT----------HTAGPRAYG 165 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 K SM P R G ++ + ++ + + + + G K I + L+++N Sbjct: 166 IKGTGDSMFPAIRSGWYVVCDPDAELVPTEFVQVCLKDGRCTIKEFIGIHNGVLSLIAVN 225 Query: 200 CCYPVDTVEMSDIEWI 215 EM ++E I Sbjct: 226 GG-ERFFFEMDEVESI 240 >gi|227550340|ref|ZP_03980389.1| possible transcriptional regulator, XRE family protein [Enterococcus faecium TX1330] gi|227180542|gb|EEI61514.1| possible transcriptional regulator, XRE family protein [Enterococcus faecium TX1330] Length = 148 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193 + K + SM+P +++ V G+ +I + K + + Sbjct: 57 GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 115 Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222 LM N Y ++ ++ + + + S Sbjct: 116 MLMPDNNDYHPYIIDENNPARILGKAVKVS 145 >gi|317486137|ref|ZP_07944982.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922622|gb|EFV43863.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 231 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 62/234 (26%), Gaps = 26/234 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++++ I T + LA + +S + +KR + K+ Sbjct: 5 QEVYDRIRCATNAR--TQTELAAVLEIRQSSISDAKRRNSIPS------DWYMKLFEKFG 56 Query: 67 ETICQLLDLPFSDG--------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + E + + V+ T + Sbjct: 57 LNPDWIKSGTGPMFLKIDQVYTPVEGPPEGFHEEPAHYADPNAISTLTKVYSTQCAYEEG 116 Query: 119 GVPEIRSPHNGIYAIQTQDT-----RHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLL 172 P +G A+ + S PL R+G + ++++ G+ Sbjct: 117 H-PAPDLQTSGKIALPQSYVNAQTLVFHIESDSFSPLVRRGAYVGVDTSRTHPISGEVYA 175 Query: 173 IKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + + K L L + +P + D + R+ W Q Sbjct: 176 VYMPHEGVALKRLFLDGDHDRFILRTEQPAHPGVALLPQDCPGRILGRVSWVLQ 229 >gi|126656635|ref|ZP_01727849.1| SOS function regulatory protein, LexA repressor [Cyanothece sp. CCY0110] gi|126621855|gb|EAZ92563.1| SOS function regulatory protein, LexA repressor [Cyanothece sp. CCY0110] Length = 200 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 8/174 (4%) Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 PS + K + + Q + + E + L G G Sbjct: 24 HAPSIRQMMKAMNLRSPAPVQSRLERLRNKEYIDWTEGKARTLRILHHQPKGVPILGAIA 83 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSM-LPLYRKGDILIL---NSAIQV 165 G + + + + I + + SM L GD+ I+ + + Sbjct: 84 AGGLVE--PFTDDQERLDLSHLIHANNYWGLRVTGDSMIEDLITDGDLAIMRSLDPDETL 141 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ + + K + G + L N Y V+ + IE ++ Sbjct: 142 KNGEIVAARVEGVGTTLKRYY-QEGEIVMLKPSNLNYQPIEVKANQIEVQGILV 194 >gi|254796863|ref|YP_003081700.1| DNA-binding protein [Neorickettsia risticii str. Illinois] gi|254590099|gb|ACT69461.1| DNA-binding protein [Neorickettsia risticii str. Illinois] Length = 205 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 62/214 (28%), Gaps = 37/214 (17%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + E + LA +AG+ + G+++ P+++ + I + Sbjct: 16 IRKRMEEIGINARELAERAGVGKSFVYDILN----GKSKNPTSKKLNSISRELGIS---- 67 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPEIRSPHNGI 130 + Y P + N V R+ Sbjct: 68 -------------------ISYLINVSPDSIDYENYLPVHSLDNQLSVSFLFNRAFCEEH 108 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD----RLLIKPRTGDIVAKVLI 186 + + D SM P + LI+ +Q GD + + + + + + Sbjct: 109 ISEAGKLYSCIMYDDSMSPSIMPNETLIIKKFVQ---GDRMKSGVFLIRDKFNSIVRSVE 165 Query: 187 SR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + N Y +I+ I +++ Sbjct: 166 HIFGSQDVKITPDNEKYSTYIKHFDEIDIIGKVI 199 >gi|206576780|ref|YP_002238953.1| protein UmuD [Klebsiella pneumoniae 342] gi|206565838|gb|ACI07614.1| protein UmuD [Klebsiella pneumoniae 342] Length = 160 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM +GD+L+++S+ GD ++ Sbjct: 53 DYVE--QRIDLNELLVNHPSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAA 110 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G+ K L + L +N Y V D Sbjct: 111 VD-GEFTVKKLQLHP--RVQLNPMNPAYSPIIVGSKD 144 >gi|116667750|pdb|2HNF|A Chain A, Structure Of A Hyper-Cleavable Monomeric Fragment Of Phage Lambda Repressor Containing The Cleavage Site Region Length = 133 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 9/95 (9%) Query: 135 TQDTRHKTQDTSMLP------LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + SM + G +++++ V GD + + + LI Sbjct: 42 DSAFWLEVEGNSMTTPTGSKTSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFAKLIRD 101 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 G+ L LN YP+ + +++ ASQ Sbjct: 102 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 133 >gi|193077060|gb|ABO11817.2| DNA polymerase V component [Acinetobacter baumannii ATCC 17978] Length = 203 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 92 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K LI + L + N Y +E I ++ Sbjct: 151 NDFTVKRLIIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195 >gi|28868298|ref|NP_790917.1| peptidase, S24 family [Pseudomonas syringae pv. tomato str. DC3000] gi|28851535|gb|AAO54612.1| peptidase, S24 family [Pseudomonas syringae pv. tomato str. DC3000] Length = 133 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 10/128 (7%) Query: 100 SGGFFDSGVFPTGNKWNTVG-VPEIRSPHNGI--YAIQTQDTRHKTQDTSM----LPLYR 152 + G+ V P + + Y + + SM P Sbjct: 1 MYRYPVVSWVAAGDWSEAVEPYPPGAADEYDVSDYKAKGPAFWLVVKGDSMTAPTAPSIP 60 Query: 153 KGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 +G +++++ +V G ++ + + K L+ G L LN YP D Sbjct: 61 EGSQILVDTRAEVLPGKLVIAKLAGSNEATFKKLVEYGGVRY-LKPLNSAYPTVQCT-ED 118 Query: 212 IEWIARIL 219 I ++ Sbjct: 119 CRIIGIVV 126 >gi|119383726|ref|YP_914782.1| putative phage repressor [Paracoccus denitrificans PD1222] gi|119373493|gb|ABL69086.1| putative phage repressor [Paracoccus denitrificans PD1222] Length = 203 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 39/215 (18%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ L L + + P + + PS + + +I Sbjct: 5 IGKILAERGLKQRWLVEQLDVSPGYVSNLVAGT-----KRPSAQMLERIAEVF------- 52 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + ++ + + +G+ + G V P+ Sbjct: 53 ----ELPASAILEGQRPVAVAGKVGAGNTVVELVDAYAKGGGLYHVAAPDDL-------- 100 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAKVLIS- 187 + + SM PL GDI+ G + + G + K + Sbjct: 101 PSSGIVAVEVAGDSMSPLIEPGDIVFFTRHFVGIDPAAIGHVSICQTDDGRALIKQIRRG 160 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIA-RILWA 221 R + DL S+N +P + R++WA Sbjct: 161 REEGTFDLYSVNSAHPPEY---------GVRLVWA 186 >gi|290512990|ref|ZP_06552354.1| regulatory protein CI bacteriophage origin [Klebsiella sp. 1_1_55] gi|289774603|gb|EFD82607.1| regulatory protein CI bacteriophage origin [Klebsiella sp. 1_1_55] Length = 161 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 14/139 (10%) Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RHKTQD 144 + G EI A + Sbjct: 13 HINHDVFRVDILDLAVSAGPGIVNQEFVEILHSVEYAPAEARHMFDGRKAENIRIINVRG 72 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM GD+L ++ +++ GD + K L + + ++S N Y Sbjct: 73 DSMSGTIEPGDLLFVDISVKSFDGDGIYAFLYDDTAHVKRLQKMKD-KLLVISDNKSYAA 131 Query: 205 DT-VEMSD---IEWIARIL 219 +E + + +++ Sbjct: 132 WDPIEKDEMNRVFVFGKVI 150 >gi|294674549|ref|YP_003575165.1| S24 family peptidase [Prevotella ruminicola 23] gi|294474294|gb|ADE83683.1| peptidase, S24 (LexA) family [Prevotella ruminicola 23] Length = 270 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 3/131 (2%) Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + + G +P + Q SM + Sbjct: 9 QWPMEMVCDTPVPYYEVGVSCGLPGEMGELPPEMVLLPSMLTRGRQVFIVDADGDSMTGV 68 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD L++ S +V+CG+ +++ G+ + KV L++ N Y + Sbjct: 69 GIYSGDALLIESTQRVHCGE-VVMVSIDGEELLKVYYVDDTGRHWLLAANPKYQPRELTA 127 Query: 210 S-DIEWIARIL 219 ++ R++ Sbjct: 128 DMNVRICGRMV 138 >gi|46446610|ref|YP_007975.1| SOS mutagenesis and repair protein UmuD [Candidatus Protochlamydia amoebophila UWE25] gi|46400251|emb|CAF23700.1| probable SOS mutagenesis and repair protein UmuD [Candidatus Protochlamydia amoebophila UWE25] Length = 143 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + + K +SM+ DIL+++ ++ G +++I Sbjct: 35 ENEMADRIDLNALLIKHPSATFFLKVSGSSMINAGIHHQDILVVDRSLPAVDG-KVVIAS 93 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G++ K L + + L++ N YP + I ++ Sbjct: 94 VDGELTVKRL-KIAFKKVQLIAENDQYPSIEISEEMNLHIWGVV 136 >gi|11640733|gb|AAG39349.1| RulA [Pseudomonas syringae pv. syringae] Length = 141 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++++ Sbjct: 19 YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIYGDSMEGAKIFHDSLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + V K+LI + G + L S N YP + + I ++ Sbjct: 76 DRSRKPSSGSIVIAALN-NEPVCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133 >gi|254422316|ref|ZP_05036034.1| LexA repressor [Synechococcus sp. PCC 7335] gi|196189805|gb|EDX84769.1| LexA repressor [Synechococcus sp. PCC 7335] Length = 207 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 37/231 (16%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M +H +++++ + + +PS ++ E + + P Sbjct: 1 MEPLTHAQQELYDWLVVYIRENRHSPS---------------IRQMMREMKLKSP----- 40 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + + + T + K+ + + + G T + T+ Sbjct: 41 APVQSRLDHLRRKGYIEWKEGQARTIRILKDKQGVPIFGAIAAGSIVETFADTLDADETL 100 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC--GDRLLIKP 175 + D + + SM L GDI+I+ ++ Sbjct: 101 ER-----FDPTALDFKGSDFALRVRGDSMIEALIDDGDIVIMRKVQDPKRIRNGTIVAAR 155 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW----IARILWAS 222 + K + L N + +++ I +W S Sbjct: 156 VESAMTLK-YYYLEDGKVTLKPANPRFAPMEYPAAEVSIDGELIG--VWRS 203 >gi|157370845|ref|YP_001478834.1| peptidase S24/S26 domain-containing protein [Serratia proteamaculans 568] gi|157322609|gb|ABV41706.1| peptidase S24 and S26 domain protein [Serratia proteamaculans 568] Length = 140 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 7/124 (5%) Query: 100 SGGFFDSGVFPTGNKWNTVGVP-EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDIL 157 + P G + + + SM G +L Sbjct: 13 QFIPLYADNVPAGFPSPAQDYIHARIDLNEYCISHPSATYFLIASGESMIEAGITDGSML 72 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWI 215 +++ +I GD ++ G+ K L + L +N + + +++ + Sbjct: 73 VVDRSIGACHGDIVI-ASIAGEFTVKRLCLHPVK--QLEPMNPTFRPIPLPDDGAELDIV 129 Query: 216 ARIL 219 ++ Sbjct: 130 GVVV 133 >gi|114049346|ref|YP_739896.1| LexA repressor [Shewanella sp. MR-7] gi|123325823|sp|Q0HPW6|LEXA_SHESR RecName: Full=LexA repressor gi|113890788|gb|ABI44839.1| SOS-response transcriptional repressor, LexA [Shewanella sp. MR-7] Length = 206 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A + G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIAETGMPPTRAEIATRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E+ E L G Sbjct: 45 EHLKALAKKGCIEIMPGTSRGIRLPVEEEDNSETGLPLIGQ-----------VAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + + SM + +GD+L ++ Q G + + Sbjct: 94 AQEHVEQYYQVDPSMFHPSADFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L + N Y V++S Sbjct: 153 VDDDVTVKRFEKK-GNLVYLHAENEDYSPIKVDLS 186 >gi|262043736|ref|ZP_06016841.1| repressor protein c2 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038915|gb|EEW40081.1| repressor protein c2 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 236 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 15/226 (6%) Query: 2 TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + +I +A + + + +T +A + + Sbjct: 5 KTLTSAQIADAERLKALYEAKKKELGITQQSIADMLDISQGGVGHYLNGRNALNAAVAAV 64 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + ++ + ++ T + +G + Sbjct: 65 FARALQVDVSDFSPSLAKEISAMSAAATSNAKYVGQYTPGIKYPVLSKIQAGHWSE--AC 122 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRL 171 + +I IQ + SM +G ++ ++ + G + Sbjct: 123 EPYALKDIDLWLESDAHIQGDAFWLLVEGESMTAPVGLSIPEGTYVLFDTGREPVNGSLV 182 Query: 172 L-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + + D K LI + L LN +P+ + + I Sbjct: 183 IAKLSESNDATFKKLIIDGDQKY-LKGLNPQWPLVPINGN-CRIIG 226 >gi|254426362|ref|ZP_05040078.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335] gi|196187776|gb|EDX82742.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335] Length = 142 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 4/88 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM+ D+LI++ + + G ++ G++ K L + ++ Sbjct: 50 PSATFLVRADGWSMVGEGIHHEDLLIVDRSEEPRHGRVVVAAID-GELTVKKLCQKEQQT 108 Query: 193 IDLMSLNCCYPVDTVEMS-DIEWIARIL 219 LM+ N YP + D+ ++ Sbjct: 109 F-LMAANPDYPSIELGEDADVRIWGVVI 135 >gi|150007493|ref|YP_001302236.1| hypothetical protein BDI_0844 [Parabacteroides distasonis ATCC 8503] gi|149935917|gb|ABR42614.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 222 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 18/222 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++++ ID + + A+ + PTS + + R PS + + KI+ Sbjct: 5 NERLQIIIDEL---FGGNKAKFAKAIEIAPTSISNYL---SDKRQSKPSADMLEKIINVV 58 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + L + + G + + ++ V + + Sbjct: 59 ENISAEWLLTGNGKMLNQYSNDTKDEPKISYTKGVPYYNVDFI----GGFDLVLNDQTIN 114 Query: 126 PHNGIYAIQTQD--TRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDI 180 P I + D SM P GD++ L + G+ I Sbjct: 115 PEYLIDFKKYNDATCWCNVTGHSMEPEINHGDMIALKKIEDKSFLPLGEVYAIVTTNDMR 174 Query: 181 VAKVLIS-RRGRSIDLMSLNC--CYPVDTVEMSDIEWIARIL 219 K L + + S L+ N Y + I I ++L Sbjct: 175 TIKRLAAGKTDDSYTLIPSNKSAEYSPQQLPSKMIRSIFQVL 216 >gi|315637193|ref|ZP_07892415.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315478560|gb|EFU69271.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 68 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%) Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + D + + K + R +D++S N YP + +D+E + ++ Sbjct: 1 MIKQKNDVSRDGIYAFTTIHGLFVKRIQRRVDGKLDIISDNKDYPSQVLNKNDLEILGKV 60 Query: 219 L 219 + Sbjct: 61 I 61 >gi|38348012|ref|NP_941261.1| putative UV protection and repair protein [Serratia marcescens] gi|157412150|ref|YP_001481491.1| UV protection and repair protein [Escherichia coli APEC O1] gi|190410339|ref|YP_001965842.1| mucA [Klebsiella pneumoniae] gi|226807749|ref|YP_002791445.1| MucA [Enterobacter cloacae] gi|226810063|ref|YP_002791758.1| MucA [Enterobacter cloacae] gi|38259489|emb|CAE51717.1| putative UV protection and repair protein [Serratia marcescens] gi|99867175|gb|ABF67820.1| UV protection and repair protein [Escherichia coli APEC O1] gi|146151133|gb|ABQ02899.1| mucA [Klebsiella pneumoniae] gi|226425976|gb|ACO54069.1| MucA [Enterobacter cloacae] gi|226426290|gb|ACO54382.1| MucA [Enterobacter cloacae] Length = 144 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 4/93 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H + + + SM+ G IL+++ ++ G ++ G+ K+L Sbjct: 42 HEYVVRNRPSTFFVRAAGLSMINAGINDGAILVVDRSLTARHGSIVVALVD-GEFTVKIL 100 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + LM N Y V +E + Sbjct: 101 HTYP--ELLLMPSNPAYKPIRVNPESLEIWGVV 131 >gi|189499875|ref|YP_001959345.1| peptidase S24 and S26 domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495316|gb|ACE03864.1| peptidase S24 and S26 domain protein [Chlorobium phaeobacteroides BS1] Length = 150 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + + + SM+ +GDIL+++ ++ GD + Sbjct: 40 AEDHLEL--KLDLNKELIRHPSATFYGRVKGYSMVDAGIDEGDILVIDKSLDPKEGDIAV 97 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + + G + LM N + V + + I+ Sbjct: 98 CFLD-GEFTVKRIGKQ-GGRMCLMPANEEFDPIPVTGENEFIVWGIV 142 >gi|325510651|gb|ADZ22287.1| transcriptional regulator, lacI/xre family [Clostridium acetobutylicum EA 2018] Length = 222 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 20/223 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------- 59 + E + ++ E L+ A+K G+ N+ + R TES+ Sbjct: 2 NRAGEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECG------RKVVTESLIHRIKKLY 55 Query: 60 -KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--FDSGVFPTGNKWN 116 K + N + + ++ ++ + + +K+ + + S + + Sbjct: 56 GKDINDINMSADEEEEVRETNYQFKSQAKKKETNEVWTDALSSILKSVPVYDYSFKKVID 115 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175 +P I + G Q + K ++ M K D+ + ++ + Sbjct: 116 KRSLPVIANKIEGF--NQDKVFFIKIENNDMTGFRIMKDDVAFGHMTSEIENNAIC-LIE 172 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 V + + + L+S N TV+ ++I+ I RI Sbjct: 173 YNDLRVLRQIKRLDNNKLLLISNNGNLMTQTVQTNEIKIIGRI 215 >gi|156936736|ref|YP_001436087.1| DNA-binding protein RDGA [Vibrio harveyi ATCC BAA-1116] gi|156529983|gb|ABU75067.1| hypothetical protein VIBHAR_p08220 [Vibrio harveyi ATCC BAA-1116] Length = 196 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 75/216 (34%), Gaps = 30/216 (13%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + + ++ + + LT + AG+ T+ +K ++ I P + ++ N Sbjct: 2 KTLGQRLEELRVNNRLTKKDVGHVAGVTGTTVDKWEKDLII-----PRDAKLKRLAEHYN 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L T + + + + FFD+ + P+G+ Sbjct: 57 VSFEWLRVGVDGAKVTPVPESFAVSIQSYKEGDESVFFDARLLPSGHSE----------- 105 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + SM + G LI++ + D+L + + + L Sbjct: 106 ---------RLVYVQVEGHSMGDILPDGSKLIVDLEDRHYKDDKLYVFKTQDFMSIRRLS 156 Query: 187 SRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219 + L SL + + ++S ++ + R++ Sbjct: 157 F-TSTGVRLQSL-GSQKDEVLTFQQLSKVDVLGRVI 190 >gi|290512882|ref|ZP_06552247.1| DNA polymerase V [Klebsiella sp. 1_1_55] gi|289774765|gb|EFD82768.1| DNA polymerase V [Klebsiella sp. 1_1_55] Length = 97 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + K SM +GD+L+++S+ GD ++ G+ K L + Sbjct: 6 PSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAAVD-GEFTVKKLQLH--QR 62 Query: 193 IDLMSLNCCYPVDTVEMSD 211 + L +N Y V D Sbjct: 63 VQLNPMNPAYSPIVVGSED 81 >gi|169796315|ref|YP_001714108.1| component of DNA polymerase V [Acinetobacter baumannii AYE] gi|213156950|ref|YP_002318995.1| DNA polymerase V component [Acinetobacter baumannii AB0057] gi|215483774|ref|YP_002325999.1| Protein samA [Acinetobacter baumannii AB307-0294] gi|301345815|ref|ZP_07226556.1| Protein samA [Acinetobacter baumannii AB056] gi|301513708|ref|ZP_07238945.1| Protein samA [Acinetobacter baumannii AB058] gi|301595076|ref|ZP_07240084.1| Protein samA [Acinetobacter baumannii AB059] gi|332851603|ref|ZP_08433552.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332866490|ref|ZP_08437032.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] gi|169149242|emb|CAM87124.1| component of DNA polymerase V [Acinetobacter baumannii AYE] gi|213056110|gb|ACJ41012.1| DNA polymerase V component [Acinetobacter baumannii AB0057] gi|213987257|gb|ACJ57556.1| Protein samA [Acinetobacter baumannii AB307-0294] gi|332729831|gb|EGJ61165.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332734569|gb|EGJ65678.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] Length = 203 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 92 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K LI + L + N Y +E I ++ Sbjct: 151 NDFTVKRLIIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195 >gi|13487804|ref|NP_108682.1| cI2009 [Lactococcus phage Tuc2009] gi|509672|gb|AAA21825.1| cI2009 [Bacteriophage Tuc2009] Length = 286 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 70/275 (25%), Gaps = 62/275 (22%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTES------- 57 +K + I + L+ LA+K G+ T+ + + + + Sbjct: 7 NKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAID 66 Query: 58 -------------------IFKILAATNETICQLLDLPFSDGRTTEKKEK---------- 88 I KI + E +++ ++ + +EK Sbjct: 67 DFFPQTDSTRMNVSSILSEINKISSQLEEPRQKIVLNTATNQLDEQNQEKKKESKVIPIN 126 Query: 89 ---------------------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + Y P G G + V + P Sbjct: 127 KIPDDLPPYISRKILENFIMPSNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPV 186 Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVL 185 + + SM P G +++ + V+ G ++ K + Sbjct: 187 PAHFLSSARDYYWLMVDGHSMEPKIPYGAYVLIEAVPDVSDGTIGAVLFQDDCQATLKKV 246 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + L+S+N + + I + + Sbjct: 247 YHEID-CLRLVSINKEFKDQFATQDNPAAVIGQAV 280 >gi|315181695|gb|ADT88608.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio furnissii NCTC 11218] Length = 198 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 39/152 (25%), Gaps = 15/152 (9%) Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIYA 132 + +I L G + + +P+ G+ Sbjct: 41 PPEQSNVSKIVPLADVKDWCELAVFDVHAAAGAGSLVHSEYQIDKLIIPKSLLAEFGL-- 98 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLIS-RRG 190 SM P D L+++ +Q D + + + K L Sbjct: 99 APNCAAIIYVDGNSMEPTLSHKDRLLVDTRELQHPVTDGVYVIRIDDAVYVKRLKWNIPK 158 Query: 191 RSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219 ++S N Y + + + I + + Sbjct: 159 GIYQVISDNPTYESFEINHKNGRNFKIIGKAI 190 >gi|86134354|ref|ZP_01052936.1| peptidase S24-like protein [Polaribacter sp. MED152] gi|85821217|gb|EAQ42364.1| peptidase S24-like protein [Polaribacter sp. MED152] Length = 144 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 4/123 (3%) Query: 99 GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPL-YRKGDI 156 G F G T + + + K + SM+ D+ Sbjct: 17 HEGAVFIDTGISAGFPSTTEDIVGEKISLDDTLVRNKDTTFYAKVRGQSMINAGLNHDDL 76 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 L+++ +++ + G+ K L ++ I L N YP+ + + I Sbjct: 77 LVIDRSLEPADKKIAVCYID-GEFTVKRLRVQKNE-IWLQPENPDYPIINITEDNDFMIW 134 Query: 217 RIL 219 I+ Sbjct: 135 GIV 137 >gi|300714992|ref|YP_003739795.1| UmuD protein [Erwinia billingiae Eb661] gi|299060828|emb|CAX57935.1| UmuD protein [Erwinia billingiae Eb661] Length = 139 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 5/98 (5%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 +N + K SM GD+L++++++ GD ++ G+ Sbjct: 37 RLDLNNLLIQRPDSTYFIKVSGESMKDAGINDGDLLVVDNSLTAGHGDIVVAAID-GEFT 95 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 K L R ++ L+++N + + D +E + Sbjct: 96 VKKLQLRP--TVQLIAMNARWAPIVLSGEDKLEIFGVV 131 >gi|295698218|ref|YP_003602874.1| mutagenesis and repair protein MucA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295060330|gb|ADF65066.1| mutagenesis and repair protein MucA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 145 Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 9/116 (7%) Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA 162 P+ + HN + + SM+ D+L+++ + Sbjct: 26 PCGFPLPSEGIEDQ-----PLDLHNYCVKRPSSTFFIRCDGLSMIDAGIAPRDLLVVDCS 80 Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 I+ G ++ + G+ K L R + L+ +N +PV VE +E + Sbjct: 81 IRPEHGAIVVARVD-GEFTVKKLQLRPFPA--LIPMNPDFPVIEVEPELLEIFGVV 133 >gi|206579018|ref|YP_002239977.1| phage repressor protein [Klebsiella pneumoniae 342] gi|206568076|gb|ACI09852.1| phage repressor protein [Klebsiella pneumoniae 342] Length = 238 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 59/226 (26%), Gaps = 15/226 (6%) Query: 2 TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + +I EA + + + +T +A + + Sbjct: 7 KTLTSAQIAEAERLKAIYEAKKKELGITQQSIADMLDISQGGVGHYLNGRNALNAAVAAV 66 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + ++ + ++ T +G + Sbjct: 67 FARALQVDVSDFSPSLAKEISAMSAAATSNARYVGQYTQGIKYPVLSKIQAGHWSE--AC 124 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRL 171 + +I IQ + SM +G ++ ++ + G + Sbjct: 125 EPYALKDIDLWLESDAHIQGDAFWLLVEGESMTAPVGLSIPEGTYVLFDTGREPVNGSLV 184 Query: 172 L-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + + + K LI + L LN +P+ + + I Sbjct: 185 IAKLSESNEATFKKLIIDGDQKY-LKGLNPQWPLVPINGN-CRIIG 228 >gi|330886947|gb|EGH20312.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 199 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 25/199 (12%), Positives = 47/199 (23%), Gaps = 16/199 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y + G + + Sbjct: 65 GPKHPNESANENTGDDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLM 196 G + + L + L Sbjct: 181 GILRVRYLYRMPNGGLRLR 199 >gi|260598021|ref|YP_003210592.1| protein umuD [Cronobacter turicensis z3032] gi|260217198|emb|CBA31065.1| Protein umuD [Cronobacter turicensis z3032] Length = 143 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 7/108 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V H ++ + SM GD+L+++SA++ D ++ Sbjct: 36 DYVEKRVSLDAHCIVH--PNATYFLRASGESMNGAGIEDGDLLVVDSALKPQENDIVVAA 93 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILWA 221 G+ K L L+ +N + V +D+ + W Sbjct: 94 -LEGEFTVKTLRLHP--VAQLVPMNPDFAPIPLVGDADVVIFGVVTWV 138 >gi|257482356|ref|ZP_05636397.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 199 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 25/199 (12%), Positives = 47/199 (23%), Gaps = 16/199 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y + G + + Sbjct: 65 GPKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSIDLM 196 G + + L + L Sbjct: 181 GILRVRYLYRMPNGGLRLR 199 >gi|291530642|emb|CBK96227.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Eubacterium siraeum 70/3] Length = 202 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 50/222 (22%), Gaps = 42/222 (18%) Query: 5 SHKKIWEAIDRMAERHNL------TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + + I + AE + L + S +A G+ + + + E Sbjct: 4 KNTDLMNEIKKFAEEYYLEYWKSPSTSEIAGAVGVTRATVYRYLKDMAE----------- 52 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + K + G+ G Sbjct: 53 ------------------RGMIDYDGSEIKTDVTRKYTDPGNNAVILDCSVSCGIGLPEE 94 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 K SM+ GD +++ N GD ++ Sbjct: 95 ERVLEYVKLPKTVFGTGDLFLLKANGDSMVDAGIEDGDWIVVRKQTDANEGDIVVALF-E 153 Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCC--YPVDTVEMSDIEWIA 216 G K ++ L S N Y V D++ Sbjct: 154 GLNNLKYFYWNKKKNCAVLRSANEAKGYKDIEVY--DLQIQG 193 >gi|317051665|ref|YP_004112781.1| peptidase S24/S26A/S26B [Desulfurispirillum indicum S5] gi|316946749|gb|ADU66225.1| Peptidase S24/S26A/S26B, conserved region [Desulfurispirillum indicum S5] Length = 150 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + SM+ R GDILI++ +++ D ++ Sbjct: 35 DYVE--RTLDLNELCIRNAPATFFVRAEGDSMINAGIRPGDILIVDRSLEPRHKDIVI-A 91 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218 G++ K+L + +I L+ +N Y V ++E + Sbjct: 92 KIHGELTVKLLHTTP--TISLVPMNPNYQPIQVREEHEMEIFGVV 134 >gi|221128063|ref|XP_002155836.1| PREDICTED: hypothetical protein [Hydra magnipapillata] gi|260222725|emb|CBA32570.1| Protein umuD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 147 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM DIL+++ AI+ ++ G+ Sbjct: 41 ERIDLSKVLITHPQATFLQRVSGHSMKDAGIFDNDILVIDRAIKPRHKMIVVAVVD-GEF 99 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L +R + L + N YP + I ++ Sbjct: 100 TVKQLY-QRAGRVKLQAANPTYPDIVPKEGQTIEIWGVV 137 >gi|37520278|ref|NP_923655.1| LexA repressor protein [Gloeobacter violaceus PCC 7421] gi|35211271|dbj|BAC88650.1| LexA repressor protein [Gloeobacter violaceus PCC 7421] Length = 191 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 9/162 (5%) Query: 48 GRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 G P ++ + L T+ + L L G + + Y P G Sbjct: 18 GSTPLPPIRTLAQELDQHRTTVYRWLQLLEQMGYL----KAQGNRYYIDPDLLGIPLLEN 73 Query: 108 VFPTGN--KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164 P G+ + S + +T + + SM +GDI+++N + Sbjct: 74 RVPAGSPVTVEEDLLNSRMSLDEYLVEERTGTFLLRVKGDSMIEAGIFEGDIVVVNQNRR 133 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 GD ++ + G++ K L R ++ L N Y Sbjct: 134 AADGDVVIARVD-GEMTLKTLRRRNQQT-WLEPANSRYSPIH 173 >gi|297539371|ref|YP_003675140.1| peptidase S24/S26A/S26B, conserved region [Methylotenera sp. 301] gi|297258718|gb|ADI30563.1| Peptidase S24/S26A/S26B, conserved region [Methylotenera sp. 301] Length = 197 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 4/100 (4%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ + + SM+ G +I++ A++ ++ G+ + Sbjct: 95 LDLNDRYITNPPATFFFQVKGDSMIGAGIYDGSTVIVDRAVKPKSSSIII-ADVDGEWMV 153 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARILWA 221 K L R G + L+S N + + E ++ +++ Sbjct: 154 KRLYKR-GNVVKLLSENPEHAPIVLAEGQELVIFGVVMYV 192 >gi|289566177|ref|ZP_06446611.1| predicted protein [Enterococcus faecium D344SRF] gi|294619696|ref|ZP_06699112.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|289162038|gb|EFD09904.1| predicted protein [Enterococcus faecium D344SRF] gi|291594079|gb|EFF25537.1| conserved hypothetical protein [Enterococcus faecium E1679] Length = 279 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 31/273 (11%), Positives = 67/273 (24%), Gaps = 58/273 (21%) Query: 2 TSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-------------- 41 S + I + ++ H T + L+ G+ T+ + Sbjct: 4 KPLSEEDKKARSIIANNLKKIT--HGYTRAQLSDMTGIPVTTLSGYFTEKSTISMENAEL 61 Query: 42 --------KRFGIEGRNRWPSTESIFK-ILAATNETICQL----------LDLPFSDGRT 82 K +R + + K +L E Sbjct: 62 IAKAFNVDKSDIDPRYSREYNYYDLKKEVLDELQENNKSFVADKFVELAEKANAAGMTLN 121 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-------NKWNTVGVPEIRSPHNGIYAIQT 135 K ++ + F G + + I G YA Sbjct: 122 RTKTDRGNIMTVLSSDIQEYNFFDTSVAAGIPSSVEAFDQDHIEQIAIPDYAMGKYAGYQ 181 Query: 136 QDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLIS-RRGR 191 K SM + G ++ + ++ GD ++ + K I+ ++ Sbjct: 182 DVFFTKINGDSMNNVIPDGSLIAVKKIESCDELKDGDIVV-FSNDNEFSVKRYINDQQNN 240 Query: 192 SIDLMSL--NCCYPVDTVEMSD---IEWIARIL 219 I N + V D ++ +++ Sbjct: 241 RIIFRPDSSNISFTDIVVNYDDTKYVQIYGKVV 273 >gi|54296168|ref|YP_122537.1| hypothetical protein lpp0191 [Legionella pneumophila str. Paris] gi|53749953|emb|CAH11338.1| hypothetical protein lpp0191 [Legionella pneumophila str. Paris] Length = 215 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 62/206 (30%), Gaps = 25/206 (12%) Query: 8 KIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + + ER N LTP+ LARK G+ + + P ++ +I Sbjct: 13 QLAQTLTDLIERENKLTPAALARKLGIPTNKITRILNGDVT----DPKASTLLQIANYFG 68 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 TI QLL L T E L PT Sbjct: 69 ITIEQLLGLESIVREGTSITEPLAQSLPI---------YEFSHPTRMTNEWYRWSTN--- 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR--TGDIVAKV 184 I P + + +LI+N + + +++K K Sbjct: 117 -----EIDGDYFALAIDTDLYEPTFPQNSLLIVNPDMMPDDRSYIVVKRNDSPQHCSIKK 171 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMS 210 + + L +N PV+ + + Sbjct: 172 YVLEGTQGY-LYPINPKLPVELFDRN 196 >gi|46402122|ref|YP_006616.1| Gp36 [Klebsiella phage phiKO2] gi|40218266|gb|AAR83052.1| Gp36 [Klebsiella phage phiKO2] Length = 202 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + +T +A G+ +R + PS E + + Sbjct: 9 GERLKARRLELKMTLKQVAESVGISLPGVQNLERG-----DVMPSLEIGLALAKCLRMPV 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +LY S G +G + + Sbjct: 64 QW--------------------ILYGTESDPDRVPVIGTTESGPDSDWQPGEPANTERFL 103 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + Q T + Y+ GD+++ +S + G+ +L+ G I L Sbjct: 104 PFVSQRNTVYALTVGNQIQHSYQPGDVILADSTLTPVPGEDVLVCDNGGKISILRLARFD 163 Query: 190 GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 L N + + SD++++ +I+ Sbjct: 164 DERYYLDGANSQ---RVIHDKSDLQFVHQIV 191 >gi|254003147|ref|YP_003052613.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4] gi|253987230|gb|ACT52086.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4] Length = 161 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 10/107 (9%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + E P+ + + + SM + DILI+N + GD ++ Sbjct: 56 ANDHIE--EEIDPNGYLIDDPNATILIRVKGDSMIEAEIFEDDILIVNRKRRARAGDIVV 113 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 + G K L L+ N YPV +M ++ I + Sbjct: 114 AELD-GGFTVKYL-----GKHCLIPANKKYPVIKFQDMQELRLIGVV 154 >gi|255535283|ref|YP_003095654.1| hypothetical protein FIC_01142 [Flavobacteriaceae bacterium 3519-10] gi|255341479|gb|ACU07592.1| hypothetical protein FIC_01142 [Flavobacteriaceae bacterium 3519-10] Length = 257 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 22/226 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + + + +R ++ A + + K + E P E + + Sbjct: 1 MSILS-----DNMRVLRDRLAISQQKTADSLKITRGRYVKYEDGSSE-----PPIEILVR 50 Query: 61 ILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-- 113 I N +I + P + +P++ + + G Sbjct: 51 IARFFNISIDLLLTVDIRKYPLDNIAALPNNRIVLPIIVDEQGENKIEIVTQKASMGYLT 110 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170 + E + + + SM P Y G ++ + + G Sbjct: 111 GYTDPDYIESLQTLSLPFLRNGKYRAFPAGGDSM-PPYSDGTFIVGKYVERREDLKKGKT 169 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + IV K + + S N Y + S++ I Sbjct: 170 -YLFITREGIVYKRYAKQNKNGTLISSDNTFYEPYEIPWSEVLEIW 214 >gi|91776134|ref|YP_545890.1| putative prophage repressor [Methylobacillus flagellatus KT] gi|91710121|gb|ABE50049.1| putative prophage repressor [Methylobacillus flagellatus KT] Length = 194 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 4/94 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + +Q + SM GD++I+ N GD ++ + K L Sbjct: 97 DDYLIEKPSQTILITVRGDSMKDAGIFDGDVVIVEKRPFANVGDIVVAILNK-EFTLKTL 155 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G L+ N +PV D E ++ Sbjct: 156 GK-EGNQFVLIPANKDFPVIR-PEGDFEIFGVVV 187 >gi|282890741|ref|ZP_06299261.1| hypothetical protein pah_c026o068 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499334|gb|EFB41633.1| hypothetical protein pah_c026o068 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 206 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 58/224 (25%), Gaps = 30/224 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++I + I H +PS + + G S Sbjct: 1 MKGLTKRQQEILDYIQEFIHSHQFSPSYREIMQNFGYS-------------------SLG 41 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 S+ K L + S + + + G G Sbjct: 42 SVSKHLQVLKRKGLLTSEKKCSRSIKPLETKPSNLNQHELELPFIG-----HILAGFPVE 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + + S+ GD+LI+ + + G+ ++ Sbjct: 97 IFPKTQSLAVPKFLVQEPDSSYILRARGNSLNDEMISDGDLLIVETGREACSGEWIVALL 156 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K G+ + L + + + D+ ++ Sbjct: 157 NEHETFIKRYYP-EGQYVRLAGHDSAQSPIMIHLDDLVIQGIVV 199 >gi|256819495|ref|YP_003140774.1| putative phage repressor [Capnocytophaga ochracea DSM 7271] gi|256581078|gb|ACU92213.1| putative phage repressor [Capnocytophaga ochracea DSM 7271] Length = 277 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 60/233 (25%), Gaps = 27/233 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATN 66 I + + L+ G +F + K G ++ E+I + N Sbjct: 3 NIVSRVKDYIDFKGLSVRKFEELVGFSNGAFATQYKNNKSIGSDK---IENILQSFPELN 59 Query: 67 ETICQLLDLPFSDGRTTEKKEK--------------EIPLLYFPPSGSGGFFDSGVFPTG 112 P + + + ++ Sbjct: 60 AEWLLTGKGPMLKNKEIVETPRVEIIKPLKVEGRDLTPKVVVVEEDELFNPIPLVPIYAQ 119 Query: 113 NKWNTVGVPEIRSPHNGIYAIQ----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQV 165 + +Y + + SM P + G ++ + + + Sbjct: 120 AGYLNGYEDPEYIKELPMYNLPEMRNGTFRMFQVNGLSMFPTLQDGSYVVGQFVENWEWL 179 Query: 166 NCGDRLLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + ++ ++ K + R+ S+ S N YP TV DI+ + Sbjct: 180 SDNRVCVVVTERDGVIVKRVLNKIRKYGSLYCKSDNRDYPHITVRAEDIKEVW 232 >gi|213156267|ref|YP_002318687.1| DNA polymerase V component [Acinetobacter baumannii AB0057] gi|301348417|ref|ZP_07229158.1| DNA polymerase V component [Acinetobacter baumannii AB056] gi|301597848|ref|ZP_07242856.1| DNA polymerase V component [Acinetobacter baumannii AB059] gi|332852423|ref|ZP_08434192.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332871004|ref|ZP_08439617.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] gi|213055427|gb|ACJ40329.1| DNA polymerase V component [Acinetobacter baumannii AB0057] gi|332729267|gb|EGJ60609.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332731764|gb|EGJ63044.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] Length = 166 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 5/105 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + SML D LI++ ++ D ++ Sbjct: 55 DYVD--RTLDMNEHLIKNEEATFIVRVASLSMLNAGIDIDDELIVDRSLDAKHNDIVVAL 112 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ L + N Y + I ++ Sbjct: 113 ID-NDFTVKRLMIDENER-WLKAENPDYDDIHLHDGQELIIWGVV 155 >gi|70734371|ref|YP_259105.1| peptidase S24-like domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68348670|gb|AAY96276.1| peptidase S24-like domain [Pseudomonas fluorescens Pf-5] Length = 237 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 60/214 (28%), Gaps = 23/214 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + E ++ S + +K P +S+ + A L Sbjct: 33 IIKYLESKGISKSA---------QAVSKWLNGSAI-----PEIDSLTALAAWLGVRREWL 78 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPEIRSPHNGIY 131 ++ + + + ++ ++ Sbjct: 79 EHGVMPALPFEDENQTDEHKASTIQTTRVPVISWVEAINWSSRSLDNETLREKTTLPCPL 138 Query: 132 AIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 AI + SM Y G ++ ++ + G+ ++ P + KVL Sbjct: 139 AISKSGFVLQVAGDSMTNYGPGKSYPHGCLIFVDPEVVAKNGECVIASLPNLHHAIFKVL 198 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G+ L S+N YP+ + +++ Sbjct: 199 VEDAGKRF-LKSVNPLYPMIEIT-DGARLCGKVI 230 >gi|27467940|ref|NP_764577.1| lexa repressor [Staphylococcus epidermidis ATCC 12228] gi|27315485|gb|AAO04619.1|AE016747_116 lexa repressor [Staphylococcus epidermidis ATCC 12228] Length = 77 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 3/74 (4%) Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 + GD +I+ S GD ++ + K + L N Sbjct: 1 MIEAGILDGDKVIVRSQTIAENGDIIVAMTEDEEATVKRFYKEKN-RYRLQPENSTMEPI 59 Query: 206 TVEMSDIEWIARIL 219 ++ + + +++ Sbjct: 60 YLDN--VIVVGKVI 71 >gi|289166242|ref|YP_003456380.1| peptidase, S24 family [Legionella longbeachae NSW150] gi|288859415|emb|CBJ13352.1| putative peptidase, S24 family [Legionella longbeachae NSW150] Length = 202 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 20/208 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ--LLD 74 + +N++ S LAR L + ++ + G P ++ I + N ++ + Sbjct: 1 MKENNVSESDLARALNLPYNTIHRL----VSGHTTDPRISTLKSIASYFNVSLDTLLNQN 56 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 + T + +P++ + + + W + + I + YA++ Sbjct: 57 QGVPNTLKTHIGPRTVPIVTWEQLSDDELLRTINSLNWDHWLPISLVSIDNLSLNAYALE 116 Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSI 193 ++ SM P + G I++ + GD L+ + + LI SI Sbjct: 117 SR--------PSMQPRFPIGTFFIIDPDCKPIDGDLILVKIKINNAVSLRELIIDPP-SI 167 Query: 194 DLMS--LNCCYPVDTVEMSDIEWIARIL 219 L+ N V S+ E I ++ Sbjct: 168 QLLPIIENSD--VLNFNESEHEIIGVVV 193 >gi|158337075|ref|YP_001518250.1| LexA repressor [Acaryochloris marina MBIC11017] gi|158307316|gb|ABW28933.1| LexA repressor [Acaryochloris marina MBIC11017] Length = 206 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 44/184 (23%), Gaps = 8/184 (4%) Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 ++ R K A + L + D + + I Sbjct: 16 VQFIEQHQHAPSIRQMMQAMKLKSPAPVQSRLDHLRKKGYVDWEIGQARTLRIVHPEHLQ 75 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG-IYAIQTQDTRHKTQDTSMLPL-YRKGD 155 S G G E+ + + + SM+ GD Sbjct: 76 SDMDQIPILGAIAAGGLIE--PFVEVVDSLEFSPKQLPPKSYALRVNGDSMIDAHITDGD 133 Query: 156 ILILNSAIQVN---CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 I+I+ + G + + K R + L + N Y V + + Sbjct: 134 IVIMRPVQEPKTIKNGTIVAARVEGEGTTLKRFHLERNE-VTLEAANLKYQPIKVLATQV 192 Query: 213 EWIA 216 E Sbjct: 193 EIQG 196 >gi|146312264|ref|YP_001177338.1| putative phage repressor [Enterobacter sp. 638] gi|145319140|gb|ABP61287.1| putative phage repressor [Enterobacter sp. 638] Length = 144 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 5/138 (3%) Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 + S S G + + + ++ + + SM Sbjct: 1 MYRVEVLDVSASAGTGHIQGSDVIDVIHAIEYNSDQALTLFGGRTSSGVKVINVRGDSMA 60 Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 GD++ ++ + GD + + G + K L + + ++S N Y + Sbjct: 61 STIEAGDLIFVDVNVNEFDGDGIYVFGFDGKVYVKRLQMIPDQ-LLVISDNPKYREWNIT 119 Query: 209 MS---DIEWIARILWASQ 223 ++L SQ Sbjct: 120 KENEHRFYVYGKVL-ISQ 136 >gi|114326646|ref|YP_743804.1| putative prophage repressor [Nitrosomonas eutropha C91] gi|114309585|gb|ABI60826.1| putative prophage repressor [Nitrosomonas eutropha C91] Length = 134 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 3/98 (3%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + + SM GDI++++ A+ G ++ G+ Sbjct: 32 RIDLSDELIQHPEATFLMRIKGHSMAMAGIDDGDIVVVDRAVNPEHGKIVIACID-GEFT 90 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L L + N Y + + ++ Sbjct: 91 CKRLY-MMDGITKLQAANPDYEDMVFKDGQTLEVWGVV 127 >gi|125972573|ref|YP_001036483.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005135|ref|ZP_05430104.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281416764|ref|ZP_06247784.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125712798|gb|ABN51290.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] gi|255990882|gb|EEU00995.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408166|gb|EFB38424.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316941189|gb|ADU75223.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 220 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 64/221 (28%), Gaps = 16/221 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ I R+ + +T LA+ G+ + R + + I K Sbjct: 2 NRLGAEIGRLRKELGITQKQLAKLVGVSEGFIIDVESG-----RRILNEDLIKKFSRVLR 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-------FDSGVFPTGNKWNTVG 119 + +L + + + + + + Sbjct: 57 GEVGKLELYEPNQDKPEPDRNVVKVVEKPVQDIWNDALSGILMTVPVYRYKMDKAVDAKQ 116 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P I++ G + + +D M K D+ ++ + D + G Sbjct: 117 LPIIQNKVEGF--PKDKVFYLIIEDDDMSGFRILKDDLALVYKTHDI-DKDGIYFVDYKG 173 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + L+S + DT+ D+ + R++ Sbjct: 174 KRTVRQIKDIGNGKLLLVSNSGRLITDTIYRKDLNVLGRLI 214 >gi|322514358|ref|ZP_08067408.1| phage transcriptional regulator [Actinobacillus ureae ATCC 25976] gi|322119747|gb|EFX91787.1| phage transcriptional regulator [Actinobacillus ureae ATCC 25976] Length = 227 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 20/205 (9%) Query: 29 RKAGLDPTSF-NKSKRFGIEG---------RNRWPSTESIFKILAATNETICQLLDLPFS 78 R + + ++ +G P + + + ++ Q +P Sbjct: 22 RATNITRKAIKEGWEKREAQGIKGGGFEYHYTSLPKSVQLALGFEPSMNSLKQSKPMPVL 81 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 + + +P S G + + +G+ + G Y Q Sbjct: 82 AVAQSADSLERVPFYNITASVGFTAISEGTYVP---DDYIGLSKRWLNLRGFYLNQ--LA 136 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM P GD+L++N + ++ + I K + I L+S Sbjct: 137 FITASGDSMYPTISDGDMLLVNLGAKQPKDGKIYVLRSGEQIWVKRVQGIING-IRLISD 195 Query: 199 NCC-YPVD--TVEMS-DIEWIARIL 219 N Y S D E I +++ Sbjct: 196 NKEIYSPMDAIFNDSLDFEVIGQVV 220 >gi|320450736|ref|YP_004202832.1| LexA repressor [Thermus scotoductus SA-01] gi|320150905|gb|ADW22283.1| LexA repressor [Thermus scotoductus SA-01] Length = 115 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 +T K SM PL +GD I+++ G + + IV K L R + + Sbjct: 13 ETSLFAVKITGNSMEPLLYEGDYAIVDTETPPLTGAIVAVGIPGDGIVVKKLAER-NKQL 71 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219 L S+N Y + D + ++ Sbjct: 72 YLESVNPLYEDIPLP-EDAKIWGPVI 96 >gi|313159646|gb|EFR59004.1| peptidase S24-like protein [Alistipes sp. HGB5] Length = 210 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 11/204 (5%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 +T LA+ G+ + + + R + + ++ ++ ++ Sbjct: 1 MTQEQLAQHLGIGKAALSMIETGKAGLSARNRNI-LVQELNVNPEWLESGKGNMFNAEPD 59 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141 T + + L + P + D Sbjct: 60 LTAYRLRTDNSLPLQSVPLYSIEGTAGLVPLFTDQAQAKPVNFIHIPN---LPKCDGAIY 116 Query: 142 TQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGD---IVAKVLIS-RRGRSID 194 SM PL + GDI++ + GD L+ + K + R + Sbjct: 117 IVGDSMYPLLKSGDIVLYKQLGNIDDIFWGDMYLLSIDIDGEEYVTVKYIQKSDREGYVK 176 Query: 195 LMSLNCCYPVDTVEMSDIEWIARI 218 L+S N + V +S I IA + Sbjct: 177 LVSQNPHHADKEVALSRIRAIALV 200 >gi|291086775|ref|ZP_06344425.2| repressor LexA [Clostridium sp. M62/1] gi|291076918|gb|EFE14282.1| repressor LexA [Clostridium sp. M62/1] Length = 206 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 62/227 (27%), Gaps = 41/227 (18%) Query: 1 MTSFS-HKKIWEAI----DRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWP 53 MT S + ++ AI D+ H+ +PS +A+ G+ + + Sbjct: 1 MTMRSKNPEVMNAICTFVDQYYREHHASPSVNEIAQGVGVSKATSYRY------------ 48 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + T++ K + P + Sbjct: 49 -----------LVAMNERGMLSYDGKTIVTKQVGKCTSGYFSAPVVGSIRCGDPEREEES 97 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 V +P+ + + + + SM+ D++++ GD ++ Sbjct: 98 VEEYVSLPKSIFG-------EGKFYILRAKGDSMVDAGIEDEDLIVIRIQDTAAVGDIVV 150 Query: 173 IKPRTGDIVAKVL--ISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIA 216 + K I + L N YP + + + Sbjct: 151 ALDEDNENTLKTFGGIDEENGDVILRYANQTKYPDKEIRVKQLIVQG 197 >gi|145218945|ref|YP_001129654.1| putative prophage repressor [Prosthecochloris vibrioformis DSM 265] gi|145205109|gb|ABP36152.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Chlorobium phaeovibrioides DSM 265] Length = 151 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 8/111 (7%) Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168 P + + + + + +SM+ GD+LI++ A++ G Sbjct: 40 PAEDHEEM-----SLDLNKALIRHPAATFYARVKGSSMMDAGIEDGDLLIIDKALEPKDG 94 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D + G+ K + + L+ N + V + + I+ Sbjct: 95 DVAVCFID-GEFTVKRI-RLGDGDLFLVPANPLFQPVRVTEENEFLVWGIV 143 >gi|229827191|ref|ZP_04453260.1| hypothetical protein GCWU000182_02577 [Abiotrophia defectiva ATCC 49176] gi|229788809|gb|EEP24923.1| hypothetical protein GCWU000182_02577 [Abiotrophia defectiva ATCC 49176] Length = 146 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 3/114 (2%) Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + E ++ + D SM PLY +++ + + Sbjct: 34 YYEAVSAGNGSFLDSEDYEMYSSADIPEKADFGVYISGDSMEPLYHNRELIWIEQTEWLE 93 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 G+ + G+ K + R + L+SLN YP + S + R+L Sbjct: 94 NGEIGIFYFD-GNAYVKKFQNNRRGAY-LVSLNKDYPPIPITESCSFKIFGRVL 145 >gi|192291732|ref|YP_001992337.1| phage repressor [Rhodopseudomonas palustris TIE-1] gi|192285481|gb|ACF01862.1| putative phage repressor [Rhodopseudomonas palustris TIE-1] Length = 214 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 66/215 (30%), Gaps = 41/215 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + + T + LA + + ++ R P + + + + Sbjct: 5 IRAILDARDWTQADLAARLRTTQVTVSRWLDGT---EPRGPMRDRLRDLAEESG------ 55 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + + + + +P Y Sbjct: 56 --------LVPQARANHVIKIMGRVGAGAIIDPDYEQTPEDGLEQIELP---------YP 98 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTGDIVAKVLISR 188 I + + TSM+P Y G+IL++ V+ G +++ G + K ++ Sbjct: 99 IGSDLIGFEVSGTSMMPKYDPGEILVVQREQPVSFDSMIGQYAVVRTDDGRRLVKRVMPG 158 Query: 189 RGRSID-LMSLNCCYPVDTVEMSDIEWIARILWAS 222 ++ L S N ++ AR++W S Sbjct: 159 PKSNLYNLESAN----------AETIVGARLVWGS 183 >gi|317052815|ref|YP_004119581.1| peptidase S24/S26A/S26B [Pantoea sp. At-9b] gi|316953555|gb|ADU73025.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. At-9b] Length = 168 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 9/158 (5%) Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + G T + FP+ + V Sbjct: 9 PLYDRQSGHAESETLPGPTGMTLLRPAEHRVQLGIPFYADLCPAGFPSPAA-DYVE--SE 65 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + +SM GD+++++ A + GD ++I G+ Sbjct: 66 LDLNELCIRRPAASYFVRASGSSMEDLGLFDGDVMVVDRAEEACHGD-VVIAEVNGEFTV 124 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220 K L + L+ ++ YP ++ + + W Sbjct: 125 KRLQLHP--RLALLPMSPAYPAIY--PESLQLMGVVTW 158 >gi|223951440|gb|ACN29685.1| UmuD [Acinetobacter baumannii] Length = 198 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 92 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ + L + N Y +E I ++ Sbjct: 151 NDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195 >gi|209901157|ref|YP_002286938.1| MucA protein [Klebsiella pneumoniae] gi|209574108|gb|ACI62996.1| MucA protein [Klebsiella pneumoniae] Length = 152 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H + + +SM GD+L+++ ++ + G ++ + K L Sbjct: 49 HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 107 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + R LM +N +PV ++ + I ++ Sbjct: 108 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 140 >gi|4456755|emb|CAB37317.1| RulA [Pseudomonas syringae pv. tomato] Length = 120 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + A K SM +++++ + + + G ++ Sbjct: 12 DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVVDRSRKPSSGSIVIAA 69 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + K+LI + G + L S N YP + + I ++ Sbjct: 70 LN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 112 >gi|11640741|gb|AAG39353.1| RulA [Pseudomonas syringae pv. tomato] Length = 141 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 8/122 (6%) Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157 F + P G + + A K SM ++ Sbjct: 16 IPFYTFKIPAGFPNPAADHTEQDSSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +++ + + + G ++ + + K+LI + G + L S N YP + + I Sbjct: 74 VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131 Query: 218 IL 219 ++ Sbjct: 132 VV 133 >gi|260221077|emb|CBA29281.1| Protein umuD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 147 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM DIL+++ AI+ ++ G+ Sbjct: 41 ERIDLSKVLITHPQATFLQRVSGHSMKDAGIFDNDILVIDRAIKPRHKMIVVAVVD-GEF 99 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L +R + L + N YP + I ++ Sbjct: 100 TVKQLY-QRAGRVKLQAANPTYPDIVPKEGQTIEIWGVV 137 >gi|187775938|ref|ZP_02799174.2| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4196] gi|188025175|ref|ZP_02776553.2| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4113] gi|189010343|ref|ZP_02806584.2| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4076] gi|189404535|ref|ZP_02790113.2| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4501] gi|195940417|ref|ZP_03085799.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4024] gi|208810485|ref|ZP_03252361.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4206] gi|208817247|ref|ZP_03258324.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4045] gi|208821150|ref|ZP_03261470.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4042] gi|187770111|gb|EDU33955.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4196] gi|188014462|gb|EDU52584.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4113] gi|189000840|gb|EDU69826.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4076] gi|189365015|gb|EDU83431.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4501] gi|208725001|gb|EDZ74708.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4206] gi|208730668|gb|EDZ79359.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4045] gi|208741273|gb|EDZ88955.1| putative repressor protein encoded within prophage CP-933O [Escherichia coli O157:H7 str. EC4042] Length = 199 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 21/190 (11%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTT 83 L G S ++ G +R+ S S+ KIL N + + Sbjct: 9 KDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILKVNENWLLNGGELNTGDSLDLS 66 Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 K +PLL + S + + I S + I + Sbjct: 67 LPPIKTVPLLSLQQAASWS-------------DYMKNSSITSCVQLVGEIPANTFAVVLE 113 Query: 144 DTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM G + ++ V G+ +L P+ + G I L+ Sbjct: 114 SDSMSTSGGGVSIPNGSTVFVDPDRIVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPT 173 Query: 199 NCCYPVDTVE 208 N YP ++ Sbjct: 174 NPRYPSIMLD 183 >gi|315224934|ref|ZP_07866753.1| transcriptional regulator [Capnocytophaga ochracea F0287] gi|314945047|gb|EFS97077.1| transcriptional regulator [Capnocytophaga ochracea F0287] Length = 276 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 60/234 (25%), Gaps = 32/234 (13%) Query: 9 IWEAIDRMAERH-NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + N S A K G++ + P + KI+ Sbjct: 4 IKFRIKELVDHFSNGNNSDFANKLGVNEANIRNYIAGT------EPKFNVLEKIVTTFEV 57 Query: 68 TICQLLDLPFSDGRTTEKKEK----------------EIPLLYFPPSGSGGFFDSGVFPT 111 LL + E E ++ Sbjct: 58 NYEWLLTGKGPMLKNKEIVETPRVEIIKPLKVEGRDLTPKVVVVEEDELFNPIPLVPIYA 117 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQ----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQ 164 + +Y + + SM P + G ++ + + Sbjct: 118 QAGYLNGYEDPEYIKELPMYNLPEMRNGTFRMFQVNGLSMFPTLQDGSYVVGQFVENWEW 177 Query: 165 VNCGDRLLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++ ++ ++ K + R+ S+ S N YP TV DI+ + Sbjct: 178 LSDNRVCVVVTERDGVIVKRVLNKIRKYGSLYCKSDNRDYPHITVRAEDIKEVW 231 >gi|167907362|ref|ZP_02494567.1| helix-turn-helix motif:Peptidase S24, S26A and S26B [Burkholderia pseudomallei NCTC 13177] Length = 153 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 5/108 (4%) Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 + + RS + + K SM P GD +++NSA Sbjct: 41 EDHAPIVFHRSWYESNGYDPEKLLAIKVAGASMEPGLYDGDWVVVNSADTSPRDGVAFAL 100 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219 G++V K L S N Y + D I R++ Sbjct: 101 SFDGEVVIKRLFR-TDGHWVAASDNQDKRIYRDRPLN-GDTFIIGRVI 146 >gi|184157751|ref|YP_001846090.1| SOS-response transcriptional repressor [Acinetobacter baumannii ACICU] gi|332876437|ref|ZP_08444204.1| peptidase S24-like protein [Acinetobacter baumannii 6014059] gi|183209345|gb|ACC56743.1| SOS-response transcriptional repressor (RecA-mediated autopeptidases) [Acinetobacter baumannii ACICU] gi|322508059|gb|ADX03513.1| Component of DNA polymerase V [Acinetobacter baumannii 1656-2] gi|323517643|gb|ADX92024.1| SOS-response transcriptional repressor (RecA-mediated autopeptidases) [Acinetobacter baumannii TCDC-AB0715] gi|332735295|gb|EGJ66355.1| peptidase S24-like protein [Acinetobacter baumannii 6014059] Length = 203 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 92 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ + L + N Y +E I ++ Sbjct: 151 NDFTVKRLMIDTQFHPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195 >gi|113972116|ref|YP_735909.1| LexA repressor [Shewanella sp. MR-4] gi|123324512|sp|Q0HDL5|LEXA_SHESM RecName: Full=LexA repressor gi|113886800|gb|ABI40852.1| SOS-response transcriptional repressor, LexA [Shewanella sp. MR-4] Length = 206 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 58/215 (26%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A + G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIAETGMPPTRAEIATRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E+ E L G Sbjct: 45 EHLKALAKKGCIEIMPGTSRGIRLPVEEEDNSESGLPLIGQ-----------VAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + + SM + +GD+L ++ Q G + + Sbjct: 94 AQEHVEQYYQVDPSMFHPAADFLLRVRGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L + N Y V++S Sbjct: 153 VDDDVTVKRFEKK-GNLVYLHAENEDYSPIKVDLS 186 >gi|95929179|ref|ZP_01311923.1| putative prophage repressor [Desulfuromonas acetoxidans DSM 684] gi|95134677|gb|EAT16332.1| putative prophage repressor [Desulfuromonas acetoxidans DSM 684] Length = 143 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 5/100 (5%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + Q SM GD+L+++ ++ GD ++ Sbjct: 35 YCERTLDLNALCIQKPAATYFVRVQGDSMIEAGIFPGDVLVVDRSLAAQHGDIVIAALN- 93 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIA 216 G++ K L + L+ +N + + +++E Sbjct: 94 GELTVKKL--ETSSTTRLVPMNKQHQAIEIPEGAELEIFG 131 >gi|293395527|ref|ZP_06639810.1| SOS mutagenesis and repair protein UmuD [Serratia odorifera DSM 4582] gi|291421846|gb|EFE95092.1| SOS mutagenesis and repair protein UmuD [Serratia odorifera DSM 4582] Length = 139 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + SM+ GD+L+++SA+ G+ ++ Sbjct: 32 DYVE--SRLDIGKLLVRHPNATYFVRASGNSMIDANIHDGDLLVVDSALNAEHGNIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 G+ K L R L+++N Y + +E + Sbjct: 90 ID-GEFTVKRLQLHPTR--QLVAMNPAYAPIILAEDATLEIFGVV 131 >gi|300776584|ref|ZP_07086442.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300502094|gb|EFK33234.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 251 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 58/211 (27%), Gaps = 16/211 (7%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-----IC 70 + + NL+ +A + ++K + P + + KI N + Sbjct: 4 LRGKLNLSQQKVADDLLITRGRYSKYEDDAA-----APPLDILVKISRYYNISIDLLLTI 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIRSPHN 128 + + +P+ G N + E + Sbjct: 59 NVSKYSIDEIMELPDNRIVLPIRVDQDGNDQIEIIPQKASMGYLNGYGDPEYIESLETIS 118 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + SM P Y+ G ++ + + + + I K Sbjct: 119 LPFLKGGKFRAFPADGDSM-PPYKNGTYIVGKYVENLSDLKTDRTYIFITTNDGISYKRF 177 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 SI + + N Y + +S+I+ I Sbjct: 178 QFHEADSIWVKADNQFYEPYKIPLSEIKEIW 208 >gi|126641435|ref|YP_001084419.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978] Length = 176 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 65 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 123 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K LI + L + N Y +E I ++ Sbjct: 124 NDFTVKRLIIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 168 >gi|157146086|ref|YP_001453405.1| DNA polymerase V subunit UmuD [Citrobacter koseri ATCC BAA-895] gi|157083291|gb|ABV12969.1| hypothetical protein CKO_01842 [Citrobacter koseri ATCC BAA-895] Length = 138 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 14/138 (10%) Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 T + + L F GF ++ + + + K Sbjct: 5 TPTDLRHVALPMFSDLVQCGFPSPAQDYVESRIDLNELLVRH---------PSATYFVKA 55 Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM +GD+L+++S+ + GD ++ G+ K L+ + L N Sbjct: 56 TGDSMRDAGIGEGDLLVVDSSRKAGHGDIVIAAVD-GEFTVKRLLLHPA--VMLKPENSV 112 Query: 202 YPVDTVEMSD-IEWIARI 218 Y + D +E + Sbjct: 113 YKPIMIGSEDNLEVFGVV 130 >gi|11640717|gb|AAG39341.1| RulA [Pseudomonas syringae pv. lachrymans] Length = 141 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 8/129 (6%) Query: 95 FPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150 SG F S P G + + + A K SM Sbjct: 9 LSESGKVIPFYSFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYAAKIDGDSMEGAK 66 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 +++++ + + G ++ + + K+LI + G + L S N YP + Sbjct: 67 IFHDSLVVVDRSRTPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPARHILEG 124 Query: 211 DIEWIARIL 219 D I ++ Sbjct: 125 DELSIWGVV 133 >gi|239503593|ref|ZP_04662903.1| Protein samA [Acinetobacter baumannii AB900] gi|260550570|ref|ZP_05824779.1| samA [Acinetobacter sp. RUH2624] gi|260555382|ref|ZP_05827603.1| LexA repressor [Acinetobacter baumannii ATCC 19606] gi|260406281|gb|EEW99764.1| samA [Acinetobacter sp. RUH2624] gi|260411924|gb|EEX05221.1| LexA repressor [Acinetobacter baumannii ATCC 19606] Length = 203 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 92 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ + L + N Y +E I ++ Sbjct: 151 NDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195 >gi|304393973|ref|ZP_07375897.1| XRE family transcriptional regulator [Ahrensia sp. R2A130] gi|303293948|gb|EFL88324.1| XRE family transcriptional regulator [Ahrensia sp. R2A130] Length = 271 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 67/215 (31%), Gaps = 27/215 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R + A +A + N+ E NR S + A + Sbjct: 77 DRLQRARIDGGFPKAADAARA---HRTINQHTLTSNENGNREISKKMAEVYGQAFGVSAA 133 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 +L + E + +GS + P + V P + Sbjct: 134 WILYGDTKNSLQGEVPLRGK-----VGAGSEVYVFDDDHPM----DYVEAPPHAT----- 179 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDIVAKVLIS 187 + + SM P+Y I+ + + R ++K G I+ K L Sbjct: 180 ----ANTSALEVDGDSMFPVYEDRAIIYYSDNVTDPSVMLNKRCVVKLANGRILVKKLRR 235 Query: 188 RRGRSID-LMSLNCCYPVDTVEMSDIEWIARILWA 221 + L S N +P ++ +EW+A+I W Sbjct: 236 GTTDELWNLDSFNPAFPTMEDQI--VEWVAKIDWV 268 >gi|291613300|ref|YP_003523457.1| peptidase S24/S26A/S26B, conserved region [Sideroxydans lithotrophicus ES-1] gi|291583412|gb|ADE11070.1| Peptidase S24/S26A/S26B, conserved region [Sideroxydans lithotrophicus ES-1] Length = 159 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 6/109 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172 + V S + + + SM GD+L+++ ++ G ++ Sbjct: 50 ADDYVE--RRLSLDEHLIQHRESTFFMRVAGHSMRDLGIFDGDLLVVDRSVPATHGCVVV 107 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220 G+ K L+ + L + + YP + I ++ W Sbjct: 108 AVID-GEFTVKQLLYTAQGKV-LRAAHPDYPDIAITAEHDFSIWGVVQW 154 >gi|332701451|ref|ZP_08421539.1| CI repressor [Desulfovibrio africanus str. Walvis Bay] gi|332551600|gb|EGJ48644.1| CI repressor [Desulfovibrio africanus str. Walvis Bay] Length = 223 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 70/220 (31%), Gaps = 14/220 (6%) Query: 12 AIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 ++R+ + + T L + G+ +S + +KR G + + K+ Sbjct: 8 FLERVRKATGVKTQVELGKVLGIRQSSISDAKRRGSVP------ADWLMKLFRTYGLNPD 61 Query: 71 QLLDLPFSDG-RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL+ + K + S G + + H Sbjct: 62 WLLEGASPVYLKPGASPSKGLEDEAGAGQPSSSRLVGVSSMLGREDENGQWQPEWTFHME 121 Query: 130 IYAI--QTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLI 186 I A+ + + M P+ KG + +++ + G+ ++ K + Sbjct: 122 IPAMFHRPSVHVMQVDSVDMAPIILKGAFVGIDTMRRNIVDGEIYAFHVPREGLIIKRVF 181 Query: 187 SRRGR-SIDLMSLNCCYPVDTVE--MSDIEWIARILWASQ 223 S L S++ + T+ + + + R++W Q Sbjct: 182 HDMHSASYRLASMDPRFSETTLTQALKEQRCVGRVVWVMQ 221 >gi|308233430|ref|ZP_07664167.1| SOS-response transcriptional repressor, LexA [Atopobium vaginae DSM 15829] Length = 186 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 51/201 (25%), Gaps = 31/201 (15%) Query: 25 SGLARKAGL-DPTSFNKSKRFGIEGR-----NRWPSTESIFKILAATNETICQLLDLPFS 78 + GL P++ + + + P + K++ E Sbjct: 1 REIGEAVGLASPSTVHMHLHALQDLGYIHRDPKKPRALVLPKLVQDEGEQH--------- 51 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 + + + + P + N + + VP S + Sbjct: 52 ----SVENDNVELNVTILPVVGRVAAGVPILAEQNIEDRLAVPTSISSDSSS-------F 100 Query: 139 RHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 K Q SM+ GD +++ G+ ++ + K I L Sbjct: 101 ILKVQGESMINAGIFDGDYVVVKEQHDARNGEIVIAMID-NECTVKRFFKES-SYIRLQP 158 Query: 198 LNCCYPVDTVEMSDIEWIARI 218 N + I ++ Sbjct: 159 ENDTMKPIIAKHP--TIIGKV 177 >gi|325121835|gb|ADY81358.1| component of DNA polymerase V [Acinetobacter calcoaceticus PHEA-2] Length = 203 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 92 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDINDPLIVDRSIPAKSGDIVIALID- 150 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ + L + N Y +E I ++ Sbjct: 151 NDFTVKRLMIDSQFHPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195 >gi|308048864|ref|YP_003912430.1| XRE family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307631054|gb|ADN75356.1| transcriptional regulator, XRE family with cupin sensor [Ferrimonas balearica DSM 9799] Length = 180 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 53/192 (27%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + L+ LA++ G+ ++ ++ + PS S+ KIL Sbjct: 2 DIGNRLRQLRTQAGLSQRELAKRTGVTNGFISQVEKNSV-----SPSVASLKKILDGLPI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ D + E+P + P + +P Sbjct: 57 SLTNFFDSEERQPAQVVFRADEMPNIGSGPIRYKLVGHAVRDRA-IGMLHETMPAGSDTG 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + ++ L + + ++ GD + Sbjct: 116 KEMLTHDGEECGVVIAGQLEL--------TVGDEVNELGPGDGYYFSSQRPH----RFRV 163 Query: 188 RRGRSIDLMSLN 199 + L+S N Sbjct: 164 LGDEPVVLVSAN 175 >gi|307274764|ref|ZP_07555934.1| peptidase S24-like domain protein [Enterococcus faecalis TX2134] gi|306508586|gb|EFM77686.1| peptidase S24-like domain protein [Enterococcus faecalis TX2134] Length = 244 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 69/218 (31%), Gaps = 29/218 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I ++A+ N+ P L + D ++ + S K++ + Sbjct: 46 ENIIKIADGLNMKPEDLLNLSNEDSDIISRITTILNQ-------LTSDRKLVVLNSAKQQ 98 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + +K + L +G G P T+ +PE P + Sbjct: 99 LKEQKQEKNNVISLPVKKSVNLYGIMTAGYGTINYDKCQP----IETIEIPENDIPKDYD 154 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 A + SM P Y G I+ + ++ G G+ K + + Sbjct: 155 LA-------FRVSGDSMYPTYEDGQIIFVRKQSEIEQGMIG-CVEINGNAFIKRIYKEKD 206 Query: 191 RSIDLMSLNCC--------YPV-DTVEMSDIEWIARIL 219 + +S N +P T + +I I +++ Sbjct: 207 -RLRFVSFNTDVDKDGNRLFPDFYTSKTDEIYIIGKVV 243 >gi|308171850|ref|YP_003915180.1| UmuD-like protein [Arthrobacter arilaitensis Re117] gi|307743222|emb|CBQ74045.1| UmuD-like protein [Arthrobacter arilaitensis Re117] Length = 143 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + Q + SM GD LI++ ++Q G ++ G++ Sbjct: 42 IDLSEMLIRDQVSTFIVRVSGESMQGAGISDGDELIVDRSVQPRDGHVVIAVID-GEMTV 100 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEW 214 K L + + L + N YP V E+SD Sbjct: 101 KRLSTGPAG-VVLKAENPDYPDLRVAELSDFRI 132 >gi|290474290|ref|YP_003467167.1| putative Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xenorhabdus bovienii SS-2004] gi|289173600|emb|CBJ80380.1| putative Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xenorhabdus bovienii SS-2004] Length = 203 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 60/215 (27%), Gaps = 28/215 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + LT S LA+KAG+ + K R + K L E Sbjct: 3 LADRLKEAMADKGLTQSALAKKAGMAQSMIWKLLSGNAVKTGR---LVDLAKALDVRPEW 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + G T + F + Sbjct: 60 LSDGSGHKSQSGDTDFA-VRHNNRYVPVKIYEAEQETPEFFMVPAFFEQ----------- 107 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 A ++ + +G ++++++ + D + + V + Sbjct: 108 --QAPVESCRAYRITQNTGCTEAPEGTVIVVDTQENIANDDLVYARIGEHYSV---YRYK 162 Query: 189 RGRSIDLMSLNCCYPVDTVEM----SDIEWIARIL 219 +G ++ +S+ + + SD+E + I+ Sbjct: 163 QGGAVSYLSV----DDTRIPLIPLSSDMEIVGVIV 193 >gi|124023302|ref|YP_001017609.1| SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9303] gi|123963588|gb|ABM78344.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9303] Length = 158 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM + GD+L+++ ++ G ++ Sbjct: 34 AEDYIEI--GIDLNEQLIRHPASTFFLRVSGHSMTGVGIHNGDLLVVDRSLDARPGHIVV 91 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214 G K L+ R + L + + YP + D++ Sbjct: 92 AILD-GAFTLKQLVRHR-GVLRLEAAHSNYPPLDLARFGDVQI 132 >gi|294789817|ref|ZP_06755046.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453] gi|294482259|gb|EFG29957.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453] Length = 201 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 60/220 (27%), Gaps = 29/220 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + + ++ + + +NL T LA A + N+ + + + Sbjct: 1 MNTLKN-----RLEEVMKEYNLKTQQDLANFAEVSKGLVNQWFKGET-----GLGAKPLI 50 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 T+ + L D R T + G F Sbjct: 51 AFEKKTHFSTQWLADGKGKKYRDTNINATGVKFGDSATIGDSNNFSIIQNS--------- 101 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 I LP +G + ++ ++ + G Sbjct: 102 --GSLKNKESHSQISDNAFCQP------LPHIPEGSEIWIDENQTDIVDGKIYLVECGGK 153 Query: 180 IVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + S+ + I L + N +P + M ++ I R+ Sbjct: 154 RYYRRVFSQPETQEILLNTDNPLFPNKKMPMDKVKIIGRV 193 >gi|293608427|ref|ZP_06690730.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829000|gb|EFF87362.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 203 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 92 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDINDPLIVDRSIPAKSGDIVIALID- 150 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ + L + N Y +E I ++ Sbjct: 151 NDFTVKRLMIDSQFHPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195 >gi|110637895|ref|YP_678102.1| SOS mutagenesis protein UmuD [Cytophaga hutchinsonii ATCC 33406] gi|110280576|gb|ABG58762.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Cytophaga hutchinsonii ATCC 33406] Length = 142 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 5/106 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + + + + + SM+ +GD+LI++ + ++ + Sbjct: 32 DYLDL--SIDLNRELITNPNATFCGRVKGNSMIDAGIEEGDVLIIDRSKELTDNSIAVCF 89 Query: 175 PRTGDIVAKVL-ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + + + + I LM N + V + I I+ Sbjct: 90 LD-GEFTVKRVKVYKSKKEIHLMPSNKNFKPIIVTPDNEFTIWGIV 134 >gi|296284322|ref|ZP_06862320.1| prophage MuMc02-like, S24 family peptidase [Citromicrobium bathyomarinum JL354] Length = 143 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLISRRG 190 A Q Q SM P GD+++++ + D + + K L Sbjct: 50 ARPGQLYWAIGQGDSMEPTISSGDLILIDRSQDTMFDRDLIWACTVGDFGMIKRL-RPTR 108 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + ++S N P D ++ I R++ Sbjct: 109 EGVTILSDNPAVPDDFAVDDELRIIGRVI 137 >gi|300779435|ref|ZP_07089293.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504945|gb|EFK36085.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 317 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 19/223 (8%) Query: 2 TSFSHKKIWEAIDRMAERH--NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + + + I + + L+ LA + L S+ K + P + + Sbjct: 58 KMSTISILADNIRYLRMQQIPELSQQQLADRLFLTRVSYAKYETAKA-----SPPLDVLL 112 Query: 60 KILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN- 113 I + + L + +P+ + G Sbjct: 113 AISRYYHISTDLLLTVDLRKYKLQEMLNLPDNRILLPIKTDSVGENKIEIIPYKASMGYL 172 Query: 114 -KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGD 169 + + + + + SM P Y+ G ++ + + + G Sbjct: 173 TGYADPEYIDSLQTMSLPFLHNGKYRAFPVVGDSM-PPYKDGTYVVGKYIENIKDIKIGK 231 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 ++ R+G K + SI + + N Y + SD+ Sbjct: 232 THVLITRSG-FTFKRIEKINDNSITVGADNTFYDSYDIPFSDL 273 >gi|146340562|ref|YP_001205610.1| hypothetical protein BRADO3606 [Bradyrhizobium sp. ORS278] gi|146193368|emb|CAL77384.1| hypothetical protein; putative LexA, SOS-response transcriptional repressor domain fragment [Bradyrhizobium sp. ORS278] Length = 219 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 65/224 (29%), Gaps = 18/224 (8%) Query: 1 MTSFS-HKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M ++ W + + S LA G+ + ++ NR S + Sbjct: 1 MKDLQLQQRRW--LSEQLKARGRGARSALANHLGIRTDAISRMTNLDGAKENREISLAEL 58 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNT 117 + + + L + + + +++ + P P + Sbjct: 59 IGMAEFFED---EPPGLKEARSKAKDIRDRTEAKITRVPLLDTVPAGKLAAPMSQLPIDQ 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 V + + + SM + + +I+N A + ++ + Sbjct: 116 VPL------LAFADLGRGDFIALTVRGDSMDRISPESSTIIVNKADRTLVSNKAYVFCDR 169 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARI 218 G++ K L + +S N + + ++ + R+ Sbjct: 170 GEVTFK-LWKPDPPRLAPLSTNPVHEPRYLKTKAEAERMVVGRV 212 >gi|56807692|ref|ZP_00365571.1| COG2932: Predicted transcriptional regulator [Streptococcus pyogenes M49 591] Length = 203 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 20/196 (10%), Positives = 49/196 (25%), Gaps = 15/196 (7%) Query: 37 SFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + + ++ + + + + L P++ + K++ Sbjct: 2 TISNWEKGKNIPNEKHLNALLHLFNVTSDYFDPNYRLLTPYNQLTISNKEKVIGYSERLL 61 Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQD 144 + + + + Y D Sbjct: 62 NHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGYSYFGDGNFDVVFYDEQLEYDFASWVFG 121 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P Y G+++++ G + G K + + L+SLN Y Sbjct: 122 DSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWDGQTYIKKVFR-EDEGLRLVSLNKKYSD 179 Query: 205 DTVE-MSDIEWIARIL 219 + I +I+ Sbjct: 180 KFAPYSEEPRIIGKII 195 >gi|262373008|ref|ZP_06066287.1| LexA repressor [Acinetobacter junii SH205] gi|262313033|gb|EEY94118.1| LexA repressor [Acinetobacter junii SH205] Length = 203 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 5/104 (4%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + + K SML D L+++ +I GD ++ Sbjct: 93 VEQALDLNEFLIRNENSTFIVKANSLSMLDAGIDIDDPLVVDRSIPAKSGDIVIALID-N 151 Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L + L + N Y ++ I ++ Sbjct: 152 DFTVKRLMIDHHFSPPKVWLKAENPDYQNIYIQEGQELVIWGVV 195 >gi|254436499|ref|ZP_05049993.1| hypothetical protein OA307_1369 [Octadecabacter antarcticus 307] gi|198251945|gb|EDY76259.1| hypothetical protein OA307_1369 [Octadecabacter antarcticus 307] Length = 230 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 70/227 (30%), Gaps = 12/227 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I E ID L+ + +R A +P+ + G+ + + +++ ++ + Sbjct: 3 QDILEIIDEALAGKGLSAAAASRLAVGNPSLIKNMR--TETGKPKRFNAQALRQLADVLD 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-------NTVG 119 + R + + + G P T Sbjct: 61 LEFYFGEPRTQTIVRLPAGFAERTVEPLATATARQEALEMGFLPIPYHSAAQPNFRGTAP 120 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 V R + + M+P G + +L+S+ GD + G Sbjct: 121 VALARQWLTASELVAESLSFLPVVTDDMVPTLTVGALALLDSSDVEPRGDGIWALALKGR 180 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWASQ 223 + + + L + +PV E+ ++ + +++W +Q Sbjct: 181 YMFARIQRPSPDMLVLKADKPNHPVQVFKGVELRALKVLGKVVWIAQ 227 >gi|254498338|ref|ZP_05111077.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352446|gb|EET11242.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 202 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 62/204 (30%), Gaps = 24/204 (11%) Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 + LTP+ LARK G+ + + P ++ +I TI QLL + Sbjct: 11 RENKLTPAALARKLGIPTNKITRILNGDVT----DPKASTLLQIANYFGITIEQLLGVEP 66 Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 ++ L +P + Sbjct: 67 MVREGISQRLTTTQALPIFELSHPEQMTKEW--------YRWIPNDIA---------GDY 109 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSIDL 195 P ++K +LI+N I + +LIK + K + + G I L Sbjct: 110 FTLALNTDLYEPTFQKNSLLIINRDIAPDDRSYILIKKNDNPHHYLIKKYV-QEGDQIYL 168 Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219 +N P++ + + I IL Sbjct: 169 YPINPKLPIEIFDENLYTVIGVIL 192 >gi|24376076|ref|NP_720119.1| LexA repressor [Shewanella oneidensis MR-1] gi|29427747|sp|Q8E8Q8|LEXA_SHEON RecName: Full=LexA repressor gi|24351098|gb|AAN57563.1|AE015892_3 LexA repressor [Shewanella oneidensis MR-1] Length = 206 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A + G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIAETGMPPTRAEIATRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E+ E L G Sbjct: 45 EHLKALAKKGCIEIMPGTSRGIRLPVEEEDNSETGLPLIGQ-----------VAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + T + + + SM + +GD+L ++ Q G + + Sbjct: 94 AQEHVEQYYQIDPSMFHPTANFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L + N Y V++S Sbjct: 153 VDDDVTVKRFEKK-GNVVYLHAENEDYSPIKVDLS 186 >gi|67924433|ref|ZP_00517859.1| Peptidase S24, LexA repressor [Crocosphaera watsonii WH 8501] gi|67853722|gb|EAM49055.1| Peptidase S24, LexA repressor [Crocosphaera watsonii WH 8501] Length = 200 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 8/181 (4%) Query: 41 SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 I+ PS + K + + Q + + E + L S Sbjct: 14 WLIKYIDENQHAPSIRQMMKAMNLRSPAPVQSRLERLRNKGYIDWIEGKARTLRILHYQS 73 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSM-LPLYRKGDILI 158 G G G + + + + + + SM L GD+ I Sbjct: 74 RGIPILGAIAAGGLVE--PFVDEQERLDLSHLLHGSSYWGLRVTGDSMIEDLITDGDLAI 131 Query: 159 L---NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + + + G+ + + K + G + L N Y + + I+ Sbjct: 132 MRSLDPDETLKNGEIVAARVEGVGTTLKRYY-QEGEMVMLKPSNLNYQPIELNANQIQVQ 190 Query: 216 A 216 Sbjct: 191 G 191 >gi|293572871|ref|ZP_06683822.1| cI repressor [Enterococcus faecium E980] gi|291607064|gb|EFF36435.1| cI repressor [Enterococcus faecium E980] Length = 169 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 3/85 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193 + K + SM+P +++ V G+ +I + K + + Sbjct: 78 GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 136 Query: 194 DLMSLNCCYPVDTVEMSD-IEWIAR 217 LM N Y ++ ++ + + Sbjct: 137 MLMPDNNDYHPYIIDENNPARILGK 161 >gi|283954206|ref|ZP_06371731.1| transcriptional regulator, putative [Campylobacter jejuni subsp. jejuni 414] gi|283794485|gb|EFC33229.1| transcriptional regulator, putative [Campylobacter jejuni subsp. jejuni 414] Length = 215 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 16/219 (7%) Query: 8 KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + +M E + + LA+ ++ + ++ G I+KI +N Sbjct: 2 EVSNILQKMFETIGVKNKNQLAKYLNIENSFIAGWEKRGKIPEK------YIYKISQDSN 55 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 L+ + T K + P G G E+ Sbjct: 56 LPYEYFLNNTNKNEYNTNKCNQSTTFYSIPKLNISASAGGGNELIG--LEEYETGEMLEL 113 Query: 127 HNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + K SM+P+ ++ + GD L I ++ K+L Sbjct: 114 SKAFFKTTPKNLKAIKVDGYSMVPMLLPDSWVVFEETHEYQ-GDGLYILNFDNQLMVKLL 172 Query: 186 ISRRGRSI-DLMSLNCCYPVDTVEMSD----IEWIARIL 219 I D++S+N Y ++++ D + ++L Sbjct: 173 QLNPISKILDIISVNKDYKSYSIDLKDSQIELIIQGKVL 211 >gi|220925622|ref|YP_002500924.1| putative phage repressor [Methylobacterium nodulans ORS 2060] gi|219950229|gb|ACL60621.1| putative phage repressor [Methylobacterium nodulans ORS 2060] Length = 230 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 63/231 (27%), Gaps = 18/231 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKA----GLDPTSFNKSKRFGIEGRNRWPSTE 56 M + E + R + +A +A GL +++ + R + Sbjct: 1 MRDRDNDARRERLKRARFDAGYKNASMAAEALRDKGLKVSTYKSHENGT-----RDITEN 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----VFPTG 112 + +A + L + G G Sbjct: 56 AAMLYASAMGISFEWLWSGKGDMRANDATTPQRNVANAITAVVPSGRLIPVVGRKRVGEG 115 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 G R G + MLP Y G+++ ++ + G + Sbjct: 116 GAIVIDGTISGRVECPGNLVDVDNAYSTEVVGDCMLPRYEPGELVFIHPTRPYHAGSYVF 175 Query: 173 --IKPRTGDI--VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ +GD+ + K + + + LN T + +E + I+ Sbjct: 176 LNVRDASGDLIGLVKRYVRTTSEHVIVEQLNP-PKTLTFDRRSVEAVHLIV 225 >gi|315655335|ref|ZP_07908235.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii ATCC 51333] gi|315490275|gb|EFU79900.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii ATCC 51333] Length = 130 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + SM+ GD LI++ +++ + G+ ++ Sbjct: 27 YFDRDIDLNEHLIRNRPATFLVRVAGDSMINAGISDGDELIVDRSLEASEGNVVIAIID- 85 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G++ K L +L N YP + S+++ + Sbjct: 86 GEMTVKRL-RFGAHGPELHPANPTYP--ILHPSELQIWGVV 123 >gi|220911002|ref|YP_002486311.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus A6] gi|219857880|gb|ACL38222.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus A6] Length = 143 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 4/81 (4%) Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 + SM GD LI+N A++ G ++ G++ K L I Sbjct: 54 STFVVRVTGNSMEGAGISDGDELIVNRALEPKDGSVVIAVLD-GELTVKRL-RITAAGIV 111 Query: 195 LMSLNCCYPVDTVEM-SDIEW 214 L + N Y V SD+ Sbjct: 112 LQAENPRYQDIKVSALSDLTI 132 >gi|77361776|ref|YP_341351.1| transcriptional repressor for SOS response [Pseudoalteromonas haloplanktis TAC125] gi|76876687|emb|CAI87909.1| transcriptional repressor for SOS response [Pseudoalteromonas haloplanktis TAC125] Length = 182 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 3/125 (2%) Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 + I L+ G G G E + + D + S Sbjct: 40 SRGIQLIEEDEPEQLGLPLIGRVAAGEPILAQQHVESHCKIDPLMFKPAADFLLRVNGMS 99 Query: 147 MLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 M + GD+L ++ G ++ + D+ K L + G+ + L + N + Sbjct: 100 MRDIGIMDGDLLAVHRTQVAENGQVIVARVD-DDVTVKRL-EKAGKKVLLHAENKEFSSI 157 Query: 206 TVEMS 210 V++ Sbjct: 158 EVDLE 162 >gi|299770585|ref|YP_003732611.1| SOS-response transcriptional repressor (RecA-mediated autopeptidases) [Acinetobacter sp. DR1] gi|298700673|gb|ADI91238.1| SOS-response transcriptional repressor (RecA-mediated autopeptidases) [Acinetobacter sp. DR1] Length = 203 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 92 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDINDPLIVDRSISAKSGDIVIALID- 150 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ + L + N Y +E I ++ Sbjct: 151 NDFTVKRLMIDSQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195 >gi|238022417|ref|ZP_04602843.1| hypothetical protein GCWU000324_02324 [Kingella oralis ATCC 51147] gi|237867031|gb|EEP68073.1| hypothetical protein GCWU000324_02324 [Kingella oralis ATCC 51147] Length = 270 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 17/179 (9%) Query: 50 NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 R PS S + + + D + + ++ + Sbjct: 95 RRSPSAASAVGVPFFMRAMVAEYADWAAAQHTDAIVPVRYHVNVFGSAGNGYQVNEPV-- 152 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 +T + S + + + + + SM P ++ + Sbjct: 153 ------DTEAMWFRASFFDYLGVPPSHCFCTRVRGDSMHPTLIDRGTVL-WKMQNGYTRE 205 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDI-----EWIARILW 220 + + + ++ K L ++S N YPV+T++++++ E LW Sbjct: 206 GIYLFRQVDELRIKRLQRTSRSVYRIISDNSNKDIYPVETLDLAELGEYDFEIYGFYLW 264 >gi|260551643|ref|ZP_05825717.1| DNA polymerase V component [Acinetobacter sp. RUH2624] gi|260405386|gb|EEW98880.1| DNA polymerase V component [Acinetobacter sp. RUH2624] Length = 165 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 3/85 (3%) Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 K SML D LI++ ++ GD ++ + K L+ Sbjct: 73 STFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVIALID-NEFTVKRLMIDEKGQ-W 130 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L + N Y + I ++ Sbjct: 131 LKAENPEYKNIYLSEEQELIIWGVV 155 >gi|221124434|ref|XP_002164597.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 129 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM DIL+++ AI+ ++ G+ Sbjct: 23 ERIDLSKVLITHPQATFLQRVSGHSMKDAGIFDNDILVIDRAIKPRHKMIVVAVVD-GEF 81 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L +R + L + N YP + I ++ Sbjct: 82 TVKQLY-QRAGRVKLQAANPTYPDIVPKEGQTIEIWGVV 119 >gi|254497240|ref|ZP_05110048.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254353468|gb|EET12195.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 213 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 17/195 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 MT + + + ++ H ++ S LAR G+ + + G R P +++ Sbjct: 1 MTEMT---LSNNLQQLMRIHGNISVSELARLTGIPQPTIHHIL----TGSTRNPRKKALE 53 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++ + +I +L KE + P + T ++ Sbjct: 54 ELSLYFSVSINEL-TGQEPLPAVIPDSVKENLQISTIPVIEWASLKTWPSTTVKTQDSQE 112 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + I D SM PL+++ +LI +S D +++ + Sbjct: 113 ILIDK-------KIAKNSFALVMPDASMEPLFQQNSLLIFDSGKTPKDRDFVIVYLSKEE 165 Query: 180 IVAK-VLISRRGRSI 193 IVA L S Sbjct: 166 IVAFNRLFIENNTSY 180 >gi|45658491|ref|YP_002577.1| LexA family transcriptional repressor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601734|gb|AAS71214.1| transcriptional repressor (LexA family) [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 209 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 35/219 (15%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSF--NKSKRFGIEGR-NRWPSTESIFKI 61 + KK+ E + R + T L L + + ++ +G R P+ Sbjct: 14 TQKKLLELLKRWKDEPR-TIRELMEALDLKYPNLVYHHIEQLENKGYLKRNPN------- 65 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 E + G G G+ + + Sbjct: 66 ----------NPKDYEIVSDPEESNIVYLNRYGEAQCGPNGTILD-----GDPVERIPLS 110 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 P + + K + SM+P + GD++I A L++ + G ++ Sbjct: 111 RKMLPFS-----SSDGFIVKARGNSMIPRIKDGDLVIAKKASDA-NDKALIVCVQNGKVL 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218 K L I L+SLN + T+ + D + + Sbjct: 165 IKQLRKSETG-ILLLSLNDEFDPITINPDKDDFKIEGEV 202 >gi|299771209|ref|YP_003733235.1| DNA polymerase V component [Acinetobacter sp. DR1] gi|298701297|gb|ADI91862.1| DNA polymerase V component [Acinetobacter sp. DR1] Length = 166 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + +T K SML D LI++ ++ GD ++ D Sbjct: 61 LDMNEHLIKNETATFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVVALID-NDFTV 119 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ + L + N Y ++ S I ++ Sbjct: 120 KRLMIEESKK-WLKAENPDYKNIYLQDSQELIIWGVV 155 >gi|38257038|ref|NP_940692.1| RulA [Pseudomonas syringae pv. syringae] gi|7404542|gb|AAC44638.2| RulA [Pseudomonas syringae] gi|37723815|gb|AAR02141.1| RulA [Pseudomonas syringae pv. syringae] Length = 141 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A K SM ++++ Sbjct: 19 YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + + G ++ + V+K+LI + G + L S N YP + + I ++ Sbjct: 76 DRSRKPSSGSIVIAALN-NEPVSKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133 >gi|299529254|ref|ZP_07042698.1| putative phage repressor [Comamonas testosteroni S44] gi|298722778|gb|EFI63691.1| putative phage repressor [Comamonas testosteroni S44] Length = 185 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 41/145 (28%), Gaps = 6/145 (4%) Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141 + + GS G + + + + Sbjct: 36 PMYHAPDAVIVPVLSNCGSMGPGSEL-LESDVIVGDLALSPHWINQQIRPQNPQELRFIH 94 Query: 142 TQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM P + GD+L++++ + + + + K + + + S Sbjct: 95 AYGDSMHPTFTDGDVLLVDTGLNARDPSSREGVYVLRANDRTFIKRVTPTFDGKLQVTSD 154 Query: 199 NCCYPV-DTVEMS-DIEWIARILWA 221 N T+ ++ + R++WA Sbjct: 155 NPSAKTVQTLNGDHQVDVVGRVVWA 179 >gi|218460494|ref|ZP_03500585.1| putative phage-related transcriptional regulator protein [Rhizobium etli Kim 5] Length = 36 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 29/36 (80%), Positives = 34/36 (94%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSF 38 SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSF Sbjct: 1 MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSF 36 >gi|120554134|ref|YP_958485.1| putative prophage repressor [Marinobacter aquaeolei VT8] gi|120323983|gb|ABM18298.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Marinobacter aquaeolei VT8] Length = 145 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + V + + + Q SM GD+L+++ +++ GD ++ Sbjct: 32 AEDYVE--KTIDLNELCIKHPAATFFVRVQGESMTEAGIYPGDVLVVDRSLRAGHGDTII 89 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K L + L+ N Y TVE + + ++ Sbjct: 90 -ASLETEMTVKQLH-LTPPPVRLLPRNPAYQPITVEGDMVMEVFGVV 134 >gi|317485949|ref|ZP_07944805.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922799|gb|EFV44029.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 230 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 63/212 (29%), Gaps = 14/212 (6%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESI------FKILAATNETICQLLDL 75 T + LA+ + +S ++KR + + E + K + + Sbjct: 20 TQTELAKLLEVSQSSVAEAKRRQSIPADWYLKLFEKLGVNPDWLKKGNGPVYLRTEAGYV 79 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 P L TG+ + P + YA + Sbjct: 80 PSDGDGPPIDPGLLGSPLAQSALAPVYAMCGDSTKTGSPAAAL-QPIGKIALPKPYAREG 138 Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLISRRGRS-I 193 + + S P R G + +++ G+ + I+ + L R + Sbjct: 139 -IIVLEMDNESAAPTARCGAYVGIDTDASHPASGELFAVLLPYEGIILRRLAWDRKKKCF 197 Query: 194 DLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 L + N YP ++ D+ + R+ W Q Sbjct: 198 VLRAENPAYPEIRIQ-EDLTGRILGRLAWVMQ 228 >gi|124262592|ref|YP_001023062.1| DNA polymerase V [Methylibium petroleiphilum PM1] gi|124261838|gb|ABM96827.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Methylibium petroleiphilum PM1] Length = 137 Score = 62.9 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + + SM GD+++++ AI G ++ + Sbjct: 33 RIDLNEVLIKHPQSTFLMRVRGPSMREAGIDDGDVVLVDRAITPCHGHVVVAVVD-HEFT 91 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARI 218 K L +RG + L + N YP + ++E + Sbjct: 92 VKRL-WKRGSRVKLQAANPTYPDIVPKDGQEVEVWGVV 128 >gi|261381420|ref|ZP_05985993.1| component of DNA polymerase V [Neisseria subflava NJ9703] gi|284795597|gb|EFC50944.1| component of DNA polymerase V [Neisseria subflava NJ9703] Length = 193 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 4/93 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + + ++ SML K DI+I++ + GD + + + Sbjct: 83 DYLDFNEYLITNPSATFAARSGGYSMLDAGIGKDDIMIIDRSKTPKHGDIV-MADVGNEF 141 Query: 181 VAKVLISRRGRSIDLMSLNC--CYPVDTVEMSD 211 K L GR +L S N YP + SD Sbjct: 142 TIKRLYKVPGRKPELHSENASGEYPDFIPDDSD 174 >gi|46446903|ref|YP_008268.1| putative SOS response regulator lexA [Candidatus Protochlamydia amoebophila UWE25] gi|46400544|emb|CAF23993.1| putative SOS response regulator lexA [Candidatus Protochlamydia amoebophila UWE25] Length = 203 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 25/217 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + I + I + E H +PS + P+ S+ K Sbjct: 1 MTP-KQQAILQFIQQFIETHQYSPS---------------YREIMKHFSLASPA--SVHK 42 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + S + G G Sbjct: 43 HIQSLQRKGVLAAEKKCSRSLIPTHPPASLTFSAEVLLPLIGNIM-----AGYPIEMFMR 97 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + + + Q S+ L + GD+L++ + V G+ ++ + Sbjct: 98 PQTIAVPSTFVHHLNNTYILRVQGNSLSEELIQDGDLLVVEARSIVQPGEIIIGAINHHN 157 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 V K G+ I L S++ + T+ + Sbjct: 158 TVVKRYYP-EGQYIRLESIHINHSSLTLRHDHLAIQG 193 >gi|332703676|ref|ZP_08423764.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus str. Walvis Bay] gi|332553825|gb|EGJ50869.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus str. Walvis Bay] Length = 151 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 6/107 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V + + + + SM + R GD+L+++ +I G ++ Sbjct: 30 ADDYVE--QSLDLNEHLVRNPPATYFVRASGDSMEGVGIRPGDLLVVDRSIDPRPG-LIV 86 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218 I G+ K L R + L N Y V D+E + Sbjct: 87 IASVQGEYTVKTLERR-ADRLWLAPANPRYTAIEVTSDSDLEIWGVV 132 >gi|237731625|ref|ZP_04562106.1| DNA polymerase V subunit UmuD [Citrobacter sp. 30_2] gi|226907164|gb|EEH93082.1| DNA polymerase V subunit UmuD [Citrobacter sp. 30_2] Length = 139 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + ++ + + K+ SM+ GD+L+++SA + GD ++ Sbjct: 32 DYVE--KRIDLNDLLVQHPSATYFVKSSGDSMMGAGIGAGDLLVVDSARKAAHGDIVIAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 G+ K L + L N Y + D ++ + Sbjct: 90 I-EGEFTVKRLQLHP--VVMLKPENSAYAPIMIGSEDTLDIFGVV 131 >gi|117922421|ref|YP_871613.1| LexA repressor [Shewanella sp. ANA-3] gi|166224649|sp|A0L2D8|LEXA_SHESA RecName: Full=LexA repressor gi|117614753|gb|ABK50207.1| SOS-response transcriptional repressor, LexA [Shewanella sp. ANA-3] Length = 206 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 58/215 (26%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A + G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIAETGMPPTRAEIATRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E+ E L G Sbjct: 45 EHLKALAKKGCIEIMPGTSRGIRLPVEEEDNSESGLPLIGQ-----------VAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + + + SM + +GD+L ++ Q G + + Sbjct: 94 AQEHVEQYYQVDPSMFHPAANFLLRVRGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L + N Y V++S Sbjct: 153 VDDDVTVKRFEKK-GNLVYLHAENEDYSPIKVDLS 186 >gi|213967419|ref|ZP_03395567.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1] gi|213927720|gb|EEB61267.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1] Length = 160 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 11/147 (7%) Query: 81 RTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139 + + P + + G V Y + Sbjct: 12 EPGTPTSEPSNVAMIPQPARMYRYPVVSSVAAGAWAEAVEEAFSDRYEASDYKAKGPAFW 71 Query: 140 HKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSID 194 + SM +G ++++++ ++ G ++ P + + K LI + Sbjct: 72 LEVVGDSMTAPSGTSVPEGMLILVDTGVEARPGKLVVAKLPSSNEATFKKLIED-AGQLY 130 Query: 195 LMSLNCCYPVDTVEMSDIEWIA---RI 218 L LN Y + D + I R+ Sbjct: 131 LKPLNPGYSMIKCT-DDCKIIGVAVRV 156 >gi|89091943|ref|ZP_01164898.1| UmuD [Oceanospirillum sp. MED92] gi|89083678|gb|EAR62895.1| UmuD [Oceanospirillum sp. MED92] Length = 141 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + + SM+ GDILI++ ++ GD ++ Sbjct: 34 DYVE--KTLDLNELLIQRPAATYFVRAEGDSMIGAGIHSGDILIVDRSLTAKEGDIVIAA 91 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G++ K L + L+ N Y T+ E SD+E + Sbjct: 92 -VEGELTVKQLQLKP--VCRLLPRNNAYRPITIAEGSDLELFGVV 133 >gi|227111912|ref|ZP_03825568.1| DNA polymerase V subunit UmuD [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 139 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + V + + + + SM GD+++++SA+Q GD ++ Sbjct: 30 ANDYVE--QRIDLNTLCVRHPSATYFVRVSGQSMVEGGIHDGDLVVVDSALQARHGDIII 87 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G+ K L R+ L+ +N Y + ++ + Sbjct: 88 AALD-GEFTIKQLQLTPTRA--LVPMNAAYAPIPINECDSLDIFGVV 131 >gi|261881050|ref|ZP_06007477.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332167|gb|EFA42953.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 215 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 65/217 (29%), Gaps = 19/217 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ + + AGL + + ++ + KI + Sbjct: 4 VSDRLAFFLKQKGKGQTAFEKDAGLGRGYVKNA--------SDNMGSKVMSKIKKQCPDL 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN----KWNTVGVPEIR 124 L E+ ++ + G+ ++ G P Sbjct: 56 NIDWLLTGEGSMLIDEENKEVPVVTNEKIRGAVPYYGDLPVSAGQQDLATILNNMEPTGW 115 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIV 181 G + + SM P + GD + ++ +++ D+ + D + Sbjct: 116 INLPG---MPSSIGAFPVVGCSMEPDIKPGDFISIIEVDRWERLDP-DKTYMIITRDDRM 171 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L L ++ YP +E S+I I R+ Sbjct: 172 IKHLSVDDSDDEILWCISPNYPKFKIEKSEIVAIYRV 208 >gi|33862908|ref|NP_894468.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9313] gi|33634824|emb|CAE20810.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9313] Length = 164 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 6/103 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM + GD+L+++ ++ G ++ Sbjct: 40 AEDYIEI--GIDLNEQLIRHPASTFFLRVSGHSMTGVGIHNGDLLVVDRSLDARPGHIVV 97 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEW 214 G K L+ R + L + + YP + D++ Sbjct: 98 AILD-GAFTLKQLVRHR-GVLRLEAAHSNYPPLDLACFGDVQI 138 >gi|89075604|ref|ZP_01162005.1| hypothetical protein SKA34_03705 [Photobacterium sp. SKA34] gi|89048611|gb|EAR54184.1| hypothetical protein SKA34_03705 [Photobacterium sp. SKA34] Length = 126 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 4/98 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ GD+L+++ A +V G ++ + + Sbjct: 24 ESLDLDEFLIRHPNATFFLRASGESMIGAGIFDGDLLVVDRAEKVIPGRIVIARI-YDEF 82 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ + L + N + D E + Sbjct: 83 TCKRLVRI-NDAWWLKAENPAMKSFPLP-QDAEIFGVV 118 >gi|257470284|ref|ZP_05634375.1| hypothetical protein FulcA4_13152 [Fusobacterium ulcerans ATCC 49185] gi|317064495|ref|ZP_07928980.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690171|gb|EFS27006.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 140 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 3/109 (2%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 G + S N + SM G I+ + + G Sbjct: 24 ISAGYGSYENEIENYISVVNFNDVFTGDVFGVVVKGDSMEDTILDGAIVFIKKCDDIPFG 83 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIA 216 G K L + G + L S N Y ++ D + Sbjct: 84 KIG-AFMLNGCAYLKRLCEKEGEMV-LRSDNSYYDDIEIKASDDFTIVG 130 >gi|222149048|ref|YP_002550005.1| transcriptional regulator [Agrobacterium vitis S4] gi|221736033|gb|ACM36996.1| transcriptional regulator [Agrobacterium vitis S4] Length = 191 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 66/225 (29%), Gaps = 41/225 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIF 59 M I I ++ LA G+ ++ N+ K EG +R E Sbjct: 1 MPM----DIATYIAQLLSMKKWNQVKLAAHFGVSQSTVNRWKSGSEPEGHHRDAIRE--- 53 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 G K K + L+ +G + N V Sbjct: 54 --------------LYNMEFGTPDSKPFKRVKLMGKVGAGQEIYAIDD-----GGQNYVD 94 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRT 177 P + SM P Y +G IL + + + R +++ Sbjct: 95 APADAHQ---------NTVAVEVSGESMYPAYEEGTILFYSKTLPPSEMVNRRAVVQLAD 145 Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 G I K + + L S+N YP ++ +EW A I W Sbjct: 146 GRIFVKTVRPGTTPNTWTLTSINALYPDMIDQI--VEWAAPIDWI 188 >gi|332668057|ref|YP_004450845.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100] gi|332336871|gb|AEE53972.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter hydrossis DSM 1100] Length = 276 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 61/204 (29%), Gaps = 14/204 (6%) Query: 28 ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKE 87 +R+ L +S ++GR R + + + + + L ++++ Sbjct: 25 SRQFALSLDYLPQSLSEILKGR-RDVTIDLLRRAVEIYQVNPIYLYTGEGELFLKPDEEK 83 Query: 88 KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHK 141 L + + Y++ Sbjct: 84 NLQILTVVTDTQDVERILHVPIAAQGVYPHEIGNPTFVQSLPSYSMPEFQYTNGVHRCFD 143 Query: 142 TQDTSMLPLYRKGDILILNSAIQVN-----CGDRLLIKPRTGDIVAKVL--ISRRGRSID 194 SM+P + +GD +I + + G++V K + + + + Sbjct: 144 INGDSMVPTFLEGDKVISCFVEPAQWEVGIKNQHVYVFVAQGEVVVKRVMNKLKEHKQLQ 203 Query: 195 LMSLNCCYPVDTVEMSDIEWIARI 218 L+S N Y ++ S+I I ++ Sbjct: 204 LISDNSFYESYPLDWSEIREIWQV 227 >gi|283850429|ref|ZP_06367718.1| putative phage repressor [Desulfovibrio sp. FW1012B] gi|283574455|gb|EFC22426.1| putative phage repressor [Desulfovibrio sp. FW1012B] Length = 232 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 7/224 (3%) Query: 5 SHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S+ + EA DR+ + ++ T +A+ + +S + +KR + W L Sbjct: 9 SNNRFDEAFDRIKKATDMRTQVEIAKLLDIRQSSISDAKRRQSIP-DSWLIKLYQIYNLN 67 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + + P +S P + Sbjct: 68 PNWIIDGEMPQFLGEQRGGALQVRESGETYGRKPKYYQMPVNSMSLPEQGQGPWTENSVE 127 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVA 182 + + + + M P+ ++G + ++ + G + +V Sbjct: 128 TLAVPEQFYRPSLVF-VRMDENDMEPVIQRGAYVGIDKERRTIRSGALYALDMPVEGLVI 186 Query: 183 KVLISRR-GRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 K + + L S N Y + + R++ Q Sbjct: 187 KRVFHDTENSRLILRSENQAYTEQALAAEGFGERVLGRVVCVFQ 230 >gi|326791744|ref|YP_004309565.1| peptidase S24/S26A/S26B, conserved region [Clostridium lentocellum DSM 5427] gi|326542508|gb|ADZ84367.1| Peptidase S24/S26A/S26B, conserved region [Clostridium lentocellum DSM 5427] Length = 489 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 35/226 (15%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES------IFKILAATNETICQLLDLPFSD 79 +R GL + K + + GR R K ++ + + ++ Sbjct: 261 EFSRMLGLTRGTSYKKLGYDMTGRVRRLKGMRQKGKVKAKKQISLEPTPLEIFMTNQLNN 320 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-------NTVGVP----------- 121 + + Y G + + +P Sbjct: 321 HQASHLPWYVETYKYINKLTGLETIFKQDTSAGETYIDEVKQEDVQSLPIYSDIAAGMPI 380 Query: 122 EIRSPHNGIYAIQT-------QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173 E+ G + I Q SM+ GD +++ + + Sbjct: 381 EVVDDTCGSFEIPGELTGHKKNTYMLHVQGDSMIGAGIDDGDYVVIQAGS--VSDHEIAA 438 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I K ++ + I L+S N Y +E + + +++ Sbjct: 439 IYYNGAITLKRIV-QEEEHILLVSENPKYRPIVIEDGEFRAMGKLI 483 >gi|315128032|ref|YP_004070035.1| transcriptional repressor for SOS response [Pseudoalteromonas sp. SM9913] gi|315016546|gb|ADT69884.1| transcriptional repressor for SOS response [Pseudoalteromonas sp. SM9913] Length = 182 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 3/125 (2%) Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 + I L+ G G G E + + D + S Sbjct: 40 SRGIQLVEEEEPEQLGLPLIGRVAAGEPILAQQHVESHCKIDPLMFKPAADFLLRVNGMS 99 Query: 147 MLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 M + GD+L ++ G ++ + D+ K L + GR + L + N + Sbjct: 100 MKDIGIMDGDLLAVHKTQVAENGQVIVARVD-DDVTVKRL-EKAGRKVLLHAENDEFSAI 157 Query: 206 TVEMS 210 V++ Sbjct: 158 EVDLE 162 >gi|90577841|ref|ZP_01233652.1| hypothetical protein VAS14_12359 [Vibrio angustum S14] gi|90440927|gb|EAS66107.1| hypothetical protein VAS14_12359 [Vibrio angustum S14] Length = 135 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 4/98 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM GD+L+++ A +V G ++ + + Sbjct: 33 ESLDLDEYLIRHPNATFFLRASGESMTGAGIFDGDLLVVDRAEKVIPGRIVIARI-YNEF 91 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ + L + N + D E + Sbjct: 92 TCKRLVRI-NDAWWLKAENPAMKSFPLP-QDAEIFGVV 127 >gi|78187063|ref|YP_375106.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase)-like [Chlorobium luteolum DSM 273] gi|78166965|gb|ABB24063.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Chlorobium luteolum DSM 273] Length = 212 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 3/104 (2%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + + + + +SM +GDIL+++ ++ GD L Sbjct: 103 EDHLEVTLDLNRALVRHPDATFYARVKGSSMIEAGIAEGDILVIDRSLDAKEGDIALCFL 162 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + + LM N Y + + I+ Sbjct: 163 D-GEFTVKRIA-MDDGVLMLMPENSAYSPIRIGEESDFQVWGIV 204 >gi|226951428|ref|ZP_03821892.1| UmuD-like protein [Acinetobacter sp. ATCC 27244] gi|294650948|ref|ZP_06728291.1| UmuD-like protein [Acinetobacter haemolyticus ATCC 19194] gi|226837850|gb|EEH70233.1| UmuD-like protein [Acinetobacter sp. ATCC 27244] gi|292823165|gb|EFF82025.1| UmuD-like protein [Acinetobacter haemolyticus ATCC 19194] Length = 203 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 5/104 (4%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + + K SML D L+++ +I GD ++ Sbjct: 93 VEQALDLNEFLIRNENSTFIVKANSLSMLDAGIDIDDPLVVDRSIPAKSGDIVIALID-N 151 Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L + L + N Y + I ++ Sbjct: 152 DFTVKRLMIDHHFNPPKVWLKAENPDYQNIYITEGQELVIWGVV 195 >gi|326795100|ref|YP_004312920.1| peptidase S24/S26A/S26B, conserved region [Marinomonas mediterranea MMB-1] gi|326545864|gb|ADZ91084.1| Peptidase S24/S26A/S26B, conserved region [Marinomonas mediterranea MMB-1] Length = 151 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 4/92 (4%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + Q SM GD+L+++ ++ GD ++ G Sbjct: 45 VERTLDLNELCIQHPSATFFVRAQGDSMIEAGIHCGDVLVVDRSLTSKHGDIVIAC-VHG 103 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 ++ KVL + L N YPV + Sbjct: 104 EMTVKVLELMPA--VALRPRNKAYPVIPISEE 133 >gi|150389370|ref|YP_001319419.1| helix-turn-helix domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149949232|gb|ABR47760.1| helix-turn-helix domain protein [Alkaliphilus metalliredigens QYMF] Length = 226 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 61/215 (28%), Gaps = 10/215 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESI-FKILAATNETI 69 I + ++ LA+K GL + + + E + K+ T + Sbjct: 8 IKEARLKAKMSEKVLAKKCGLAESYIVQVESGKKVINENAAEKILEKLGAKVAFVTEQEE 67 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVPEIR 124 + R +++E + FP +P + Sbjct: 68 PVQKSQNSKETRVNKQEETFFNVQPTEQWSDALANIIKKFPVYQLDTNKITQYKELPILN 127 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 G Y + + +K DI++++ ++ + + + + Sbjct: 128 KKVEG-YTWDKILFVQSSNNEMQALRIKKDDIVMISLTNEIQNNNI-YLFEIDNRKMLRQ 185 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L + L + N ++ I+ I + + Sbjct: 186 LRKEANNKVTLSTGNKGEIPIQTDVKQIKIIGKCV 220 >gi|315497361|ref|YP_004086165.1| hypothetical protein Astex_0316 [Asticcacaulis excentricus CB 48] gi|315415373|gb|ADU12014.1| hypothetical protein Astex_0316 [Asticcacaulis excentricus CB 48] Length = 233 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 6/221 (2%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFK 60 ++ + + + LT + LA+KAGL T+ + + R G E++ Sbjct: 9 DIQREEQRKWLLQAISESGLTATALAKKAGLAATTVTRRVNPREDGHGGESLLKRETLLA 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A + L + + + + + + G G+ Sbjct: 69 LAKAAGVSPPVLGAPYLAARSERRRVDDDEDSVLINQVDLY-YGMGGGSDIGDHVEVEPR 127 Query: 121 PEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTG 178 RS I A S P GDIL+++ S + D+ + Sbjct: 128 KFSRSWLRQISNANPKDLFWTTGNGDSNYPTIADGDILLIDMSQKKPQKNDQFWAITQYN 187 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L ++S N P D + I R++ Sbjct: 188 LGQIKRL-RATADGFQILSDNPQVPSDKATDGSMVIIGRLV 227 >gi|126172410|ref|YP_001048559.1| LexA repressor [Shewanella baltica OS155] gi|153002676|ref|YP_001368357.1| LexA repressor [Shewanella baltica OS185] gi|160877411|ref|YP_001556727.1| LexA repressor [Shewanella baltica OS195] gi|217975253|ref|YP_002360004.1| LexA repressor [Shewanella baltica OS223] gi|166224645|sp|A3CYX7|LEXA_SHEB5 RecName: Full=LexA repressor gi|166224646|sp|A6WU05|LEXA_SHEB8 RecName: Full=LexA repressor gi|189046546|sp|A9KUW8|LEXA_SHEB9 RecName: Full=LexA repressor gi|254809106|sp|B8ECL9|LEXA_SHEB2 RecName: Full=LexA repressor gi|125995615|gb|ABN59690.1| SOS-response transcriptional repressor, LexA [Shewanella baltica OS155] gi|151367294|gb|ABS10294.1| SOS-response transcriptional repressor, LexA [Shewanella baltica OS185] gi|160862933|gb|ABX51467.1| transcriptional repressor, LexA family [Shewanella baltica OS195] gi|217500388|gb|ACK48581.1| SOS-response transcriptional repressor, LexA [Shewanella baltica OS223] gi|315269615|gb|ADT96468.1| transcriptional repressor, LexA family [Shewanella baltica OS678] Length = 206 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 55/214 (25%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A + G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIADTGMPPTRAEIATRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA G G G Sbjct: 45 EHLKALAKKGCIEIMPGTSRGIRLTAE-----------VEEVTETGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + + SM + +GD+L ++ Q G + + Sbjct: 94 AQEHVEQYYQVDPSMFHPAADFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K + G + L + N Y V++ Sbjct: 153 VDDDVTVKRFEKK-GNVVYLHAENEDYSPIKVDL 185 >gi|254419963|ref|ZP_05033687.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3] gi|196186140|gb|EDX81116.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3] Length = 153 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 12/140 (8%) Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139 + + + +G G + + VP ++ Sbjct: 23 QPPAGPAYDTLDVYGYAQAGGDDL---VSLADGQVIDRIEVPAGL--------VRGATIG 71 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 + SM P G+ +I+ + +++ R G + K +R ++ L N Sbjct: 72 IRVVGDSMEPRLFSGETVIVGLNMPPQRDRDCVVEFRDGSAIVKQYKGQRDGTVFLHQYN 131 Query: 200 CCYPVDTVEMSDIEWIARIL 219 V VE S ++ I +L Sbjct: 132 PDKEVR-VEASKVKAIHAVL 150 >gi|258647471|ref|ZP_05734940.1| UmuD protein [Prevotella tannerae ATCC 51259] gi|260852649|gb|EEX72518.1| UmuD protein [Prevotella tannerae ATCC 51259] Length = 216 Score = 62.5 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 4/183 (2%) Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 + F IEGR + N + +I S Sbjct: 26 RLFSFRIEGRLADFIDSHKNRTAFIHNCIEKAFNKKEEDASFFALQTLGDIYPATSVRSM 85 Query: 100 SGGFFDSGVFPTGN--KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 + FD+ G +T + + K + SM+ GDI Sbjct: 86 TLPKFDNARVVAGFPLALDTDEQAQSVDILRMLCPNPEASYLIKVRGDSMIDAGISDGDI 145 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +I++ + + + + G+ K ++ + G++ L+ N YP + D + Sbjct: 146 IIVDKSNRTPSEHEVAVCEYNGEYTIKHIVQQAGKT-WLVPANPKYPRIEIFEEDDFSVW 204 Query: 217 RIL 219 ++ Sbjct: 205 GVV 207 >gi|260769159|ref|ZP_05878092.1| prophage MuSo1 transcriptional regulator Cro/CI family [Vibrio furnissii CIP 102972] gi|260614497|gb|EEX39683.1| prophage MuSo1 transcriptional regulator Cro/CI family [Vibrio furnissii CIP 102972] Length = 135 Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 15/129 (11%) Query: 104 FDSGVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 G + + +P+ G+ SM P D Sbjct: 1 MFDVHAAAGAGSLVHSEYQIDKLIIPKSLLAEFGL--APNCAAIIYVDGNSMEPTLSHKD 58 Query: 156 ILILN-SAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEM---S 210 L+++ +Q D + + + K L ++S N Y + Sbjct: 59 RLLVDTRELQHPVTDGVYVIRIDDAVYVKRLKWNIPKGIYQVISDNPTYESFEINHKNGR 118 Query: 211 DIEWIARIL 219 + + I + + Sbjct: 119 NFKIIGKAI 127 >gi|315656752|ref|ZP_07909639.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492707|gb|EFU82311.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 146 Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + SM+ GD LI++ +++ + G+ ++ Sbjct: 43 YFDRDIDLNEHLIRNRPATFLVRVAGDSMINAGISDGDELIVDRSLEASEGNVVIAIID- 101 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G++ K L +L N YP + S+++ + Sbjct: 102 GEMTVKRLHFGTHGP-ELHPANPTYP--ILHPSELQIWGVV 139 >gi|301063310|ref|ZP_07203855.1| repressor LexA [delta proteobacterium NaphS2] gi|300442607|gb|EFK06827.1| repressor LexA [delta proteobacterium NaphS2] Length = 221 Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 53/221 (23%), Gaps = 34/221 (15%) Query: 6 HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIFKIL 62 ++I+ I + T +A + L T + R Sbjct: 11 QEEIFGFIQEYLNGKGVPPTQKEIAERFNLKGTYGVRQHLRL------------------ 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + + + G G V E Sbjct: 53 -------MEKKGVIRLVRGKARGIRVTSSIFHESDQAIRKIPLLGRIAAGRPLLAVEEVE 105 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + Q SM+ + GDI I+N +V G+ + + Sbjct: 106 EVLNIGADVFRGQNLFALRVQGDSMINAGIKAGDIAIINQQPEVQNGEIAAVILD-DEAT 164 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219 K ++ R I L + N Y V + + + Sbjct: 165 LKRVMLDRD-RIFLKAENDLYQDIIVFPDSNQRLHIAGKFV 204 >gi|71065549|ref|YP_264276.1| S24 family peptidase [Psychrobacter arcticus 273-4] gi|71038534|gb|AAZ18842.1| merops peptidase family S24 [Psychrobacter arcticus 273-4] Length = 239 Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 60/207 (28%), Gaps = 16/207 (7%) Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 + ++ G A A + G ++ K + ++ + P Sbjct: 35 AKRGVSKEG-ALAAAEKYNADANYILSGSSPNTTVSDLKAKIKTMQSSTIQSTTNPNDPE 93 Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 R + + +G F D + + + P+ S + Sbjct: 94 GTLRVPVDYRMDGYVPVISWVAAGSFSDVMPVTIDDVIDWIPRPQHLS---------KRA 144 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTG-DIVAKVLIS-RRGRS 192 Q SM P ++ +I+ + I GD ++I K LI Sbjct: 145 FGLIIQGRSMWPEFKPDEIIYVEPEIAPWDLKDGDLVVIHCNDDKQATFKQLIMGNGPED 204 Query: 193 IDLMSLNCCYPVD-TVEMSDIEWIARI 218 + L LN +P V M + + + Sbjct: 205 MYLKPLNPDWPDQKIVPMGECMLVGIV 231 >gi|21233742|ref|NP_640040.1| DNA polymerase V subunit UmuD [Proteus vulgaris] gi|21202926|dbj|BAB93642.1| UV protection and mutation protein [Proteus vulgaris] Length = 138 Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 5/108 (4%) Query: 103 FFDSGVFPTGNKWNTVGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 F + P G + + + TSM+ GDI+I++ Sbjct: 15 PFFEALIPAGFPSPASDYSKNNIDLNELLITHPAGTYFLRVSGTSMIDANISDGDIVIVD 74 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 S++Q N G+ ++ G+ K L + L+ +N + + Sbjct: 75 SSLQANDGNIVIASID-GEFTVKQLQKTPFPA--LIPMNPDFSPIPIP 119 >gi|159903249|ref|YP_001550593.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9211] gi|159888425|gb|ABX08639.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT 9211] Length = 153 Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 5/106 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + K + SM + GD+LI++ ++ G ++ Sbjct: 37 ADDYID--AGIDLNEHLILHPASTFFLKVKGFSMTNAGIQNGDLLIVDRSLDAQPGCIVV 94 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G K L + ++ L + + YP + D I + Sbjct: 95 AILD-GCFTLKRLTRHK-ETLYLEAEHPNYPAIDMRHYDNVQIWGV 138 >gi|227512107|ref|ZP_03942156.1| possible XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227084661|gb|EEI19973.1| possible XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 94 Score = 62.1 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 6/90 (6%) Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM + G I + +V GD + + K R++ L Sbjct: 1 MFALQVDGDSMSKVIAPGFIAVFAKDCEVENGDICAVLVDGENATLKRF-KETSRAVILE 59 Query: 197 SL--NCCYPVDTVEMS---DIEWIARILWA 221 N Y D + + ++A Sbjct: 60 PESFNPIYKPLIFPKGIERDFIILGKYVFA 89 >gi|291286857|ref|YP_003503673.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884017|gb|ADD67717.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 244 Score = 62.1 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 64/251 (25%), Gaps = 43/251 (17%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + H I E I + N T +A + ++ ++ G + I KI Sbjct: 1 MYKH--IGEKIKDLRRIKNYTQVKIADILSITYQTYQHHEKTGN------FDSHKIIKIA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + + + K + L N + + V E Sbjct: 53 NALGV---DYNTIFDLETPASLAKNRYSSPLVSSDVQVYYGNIPPDVINKNAFEFIPVRE 109 Query: 123 IRSPHNGIYA-------------------IQTQDTRHKTQDTSMLPLYRKGDILILN--- 160 S + +D SM P KGDI + Sbjct: 110 TESLAGSSVMRITNNKTLRWVCVPNSASNKFCELKAFHIRDDSMEPHLCKGDIAGVCIYK 169 Query: 161 --SAIQVNCGDRLLIKPRTG----DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE- 213 + + + K + + + L+ N + V +S+ Sbjct: 170 AVPDLNSLNSEFIYFCQLDDNYGTGYTFKKAKVIKEQFLTLIPENRTHDAIVVNLSEENA 229 Query: 214 ---WIARILWA 221 I R++W Sbjct: 230 SNPIIGRVVWI 240 >gi|324017929|gb|EGB87148.1| peptidase S24-like domain protein [Escherichia coli MS 117-3] Length = 103 Score = 62.1 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 3/97 (3%) Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 ++ V + + + SM+ YR GD++ ++ + GD + Sbjct: 9 EVGYSEVDL-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDV 67 Query: 172 LI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 + +G+ K LI + L +LN +P + Sbjct: 68 IALMHDSGETTFKRLIEDGTQRY-LKALNPNWPEPYI 103 >gi|261207290|ref|ZP_05921978.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|260078505|gb|EEW66208.1| conserved hypothetical protein [Enterococcus faecium TC 6] Length = 224 Score = 62.1 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 46/172 (26%), Gaps = 15/172 (8%) Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + A T+ + + +E + + Sbjct: 53 ELAEKANAAGMTLNRTKTDRGNIMTVLSSDIQEYNFFDTSVAAGIPSSVEAF-----DQD 107 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLI 173 + I G YA K SM + G ++ + ++ GD ++ Sbjct: 108 HIEQIAIPDYAMGKYAGYQDVFFTKINGDSMNNVIPDGSLIAVKKIESCDELKDGDIVV- 166 Query: 174 KPRTGDIVAKVLIS-RRGRSIDLMSL--NCCYPVDTVEMSD---IEWIARIL 219 + K I+ ++ I N + V D ++ +++ Sbjct: 167 FSNDNEFSVKRYINDQQNNRIIFRPDSSNISFTDIVVNYDDTKYVQIYGKVV 218 >gi|260889363|ref|ZP_05900626.1| putative LexA repressor [Leptotrichia hofstadii F0254] gi|260860774|gb|EEX75274.1| putative LexA repressor [Leptotrichia hofstadii F0254] Length = 187 Score = 62.1 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 10/166 (6%) Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---- 114 K+ + ++L F + K++E + + G+ GN Sbjct: 4 QKLDTNLLIALSKVLKKDFIEMLGHNPKKQESNVSNEIFTSFIQIPIYGMASAGNGLIEM 63 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDR 170 V E S N ++ +D + + SM P Y GDI++++ ++ G Sbjct: 64 DENVEEIEYISIPNINKNVKKRDFACRVRGDSMEPHYHDGDIIVVDVQDGIDIRILNGQE 123 Query: 171 LLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWI 215 + + K + G ++ L S N Y + +++ + Sbjct: 124 -ALIYQEDSKYLKRVFFEEGTGNLILKSYNPAYADYIIPNHELDKV 168 >gi|329297965|ref|ZP_08255301.1| Repressor protein CI [Plautia stali symbiont] Length = 171 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 5/92 (5%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 SM + D L ++ ++ GD + + + K L + + + Sbjct: 74 ENIRLIALNSDSMAGTFAPRDQLFVDISVHRFDGDGIYLFNLDNQLYLKRLQLQH-KKVA 132 Query: 195 LMSLNCCYPVDTVEMSD---IEWIARILWASQ 223 ++S N Y + + + ++ IAR++ SQ Sbjct: 133 VISDNKRYETWYLTLDEAASLQVIARVIM-SQ 163 >gi|282879905|ref|ZP_06288630.1| peptidase, S24 family [Prevotella timonensis CRIS 5C-B1] gi|281306207|gb|EFA98242.1| peptidase, S24 family [Prevotella timonensis CRIS 5C-B1] Length = 152 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 4/106 (3%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + + + + SM+ + GDI +++ A + D ++ Sbjct: 32 EDYLQDRIDFNRDLIKHPEATFYGRVSGDSMVGVGIYDGDIAVIDRAEEPKDKDIVV-AY 90 Query: 176 RTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K L + I+LM N + V D I ++ Sbjct: 91 VNGEFTLKFLNTAHAQEGYIELMPANENFKPIKVVNDDDFEIWGVV 136 >gi|330996118|ref|ZP_08320011.1| peptidase S24-like protein [Paraprevotella xylaniphila YIT 11841] gi|329573889|gb|EGG55470.1| peptidase S24-like protein [Paraprevotella xylaniphila YIT 11841] Length = 169 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 10/99 (10%), Positives = 32/99 (32%), Gaps = 3/99 (3%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + + SM GD+++++ +++ GD ++ G+ Sbjct: 62 GIDLNKELVRHRETTFYARVSGHSMAGAGIEDGDLVVVDKSLEARTGDYVVACID-GEFT 120 Query: 182 AKVLISRRGRSI-DLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ N + + + + ++ Sbjct: 121 LKQFRLDAANCCAWLVPANEEFQPIKITGENDFRVWGVV 159 >gi|262042207|ref|ZP_06015379.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040440|gb|EEW41539.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 148 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 10/133 (7%) Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNGIYAIQ 134 P + F FP+ + V + + Sbjct: 1 MRTEPHFSPTVLQVHPQTPARLAIPLFSEACPAGFPSPAG-DYVE--QELDLNTLCIRHP 57 Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + SM + GDILI++ A GD ++ + G K L R Sbjct: 58 SATYFLRASGESMRDIGLHDGDILIVDRAETAQEGDIVIAEIDRG-FTVKRLRLRP--RP 114 Query: 194 DLMSLNCCYPVDT 206 L +N YP Sbjct: 115 ALEPMNPDYPTLY 127 >gi|146318705|ref|YP_001198417.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320914|ref|YP_001200625.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253751815|ref|YP_003024956.1| phage repressor-like protein [Streptococcus suis SC84] gi|253753638|ref|YP_003026779.1| phage repressor-like protein [Streptococcus suis P1/7] gi|253755481|ref|YP_003028621.1| phage repressor-like protein [Streptococcus suis BM407] gi|145689511|gb|ABP90017.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145691720|gb|ABP92225.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251816104|emb|CAZ51727.1| putative phage repressor-like protein [Streptococcus suis SC84] gi|251817945|emb|CAZ55723.1| putative phage repressor-like protein [Streptococcus suis BM407] gi|251819884|emb|CAR45913.1| putative phage repressor-like protein [Streptococcus suis P1/7] gi|292558385|gb|ADE31386.1| Helix-turn-helix motif containing protein [Streptococcus suis GZ1] gi|319758167|gb|ADV70109.1| transcriptional regulator [Streptococcus suis JS14] Length = 266 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 73/264 (27%), Gaps = 59/264 (22%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW--PSTESIFKILAATN 66 + + + ++ L+ A +GL + ++ + P+ +++ K+ Sbjct: 3 LGDILKEYRSKNKLSMDKFAELSGLTKGYISMLEKNQHPKTKKALLPTMDTLEKVAKGMA 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTG----- 112 ++ +L++ S+ L+ P G F + G Sbjct: 63 ISVGELIEQLDSNQDIALTITPSQFKLFQQPIHPEVLTLDNELKGDFHAQWLTFGQEQLA 122 Query: 113 --------------NKWNTVGVPEIRSP----------------------HNGIYAIQTQ 136 + + E+ P ++ I Q+ Sbjct: 123 AMQTASVTPSASILHLDDYRERIELPVPGKVSAGTGYWQDTDMNNLVSFYNDEIPDNQSY 182 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 DT + SM P GD L + + + G+ K L Sbjct: 183 DTIAQVVGDSMAPHIEDGDYLFIRLTPHIPLNTIGI-FSVNGENFVKKFKGD-----YLQ 236 Query: 197 SLNCCYPVDTV-EMSDIEWIARIL 219 SLN Y DI I +++ Sbjct: 237 SLNSDYDDIYFSPEDDIRPIGQVV 260 >gi|313157271|gb|EFR56698.1| peptidase S24-like protein [Alistipes sp. HGB5] Length = 294 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 6/125 (4%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS-MLPLYRKG 154 P + FP + V V + + + K + S + Sbjct: 160 PALFERRAIRASYFPASD----VPVAGLVDLNEELIPNPISTFFGKVRGISLIEDDIEDS 215 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 D +I++ ++ GD + + K + I LM N Y + + Sbjct: 216 DSVIVDRMLEPRWGDLAV-CVTSEGFTMKYVEVHDDGEIWLMPGNKDYAPIRITGENERL 274 Query: 215 IARIL 219 I I+ Sbjct: 275 IWGIV 279 >gi|41189526|ref|NP_958626.1| 77ORF011 [Staphylococcus phage 77] gi|40557227|gb|AAR87883.1| 77ORF011 [Staphylococcus phage 77] Length = 255 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 10/167 (5%) Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I I + + + ++ + K I S TG Sbjct: 94 KINNIFSQLTPPRQENVLNYANEQLDEQNKVTSIDEYKESKLVSYIACG----ATGAGIG 149 Query: 117 TVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 +I +T D SM P+ ++G + + G L+ Sbjct: 150 EELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDSIKDGTIALV 209 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 G + K + I+L+SLN Y V SDI+ + +++ Sbjct: 210 VLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSDIKVMGKVV 254 >gi|304412271|ref|ZP_07393879.1| transcriptional repressor, LexA family [Shewanella baltica OS183] gi|307306055|ref|ZP_07585800.1| transcriptional repressor, LexA family [Shewanella baltica BA175] gi|304349306|gb|EFM13716.1| transcriptional repressor, LexA family [Shewanella baltica OS183] gi|306910928|gb|EFN41355.1| transcriptional repressor, LexA family [Shewanella baltica BA175] Length = 206 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 55/214 (25%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A + G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIADTGMPPTRAEIATRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA G G G Sbjct: 45 EHLKALAKKGYIEIMPGTSRGIRLPAE-----------VEDLTETGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + + SM + +GD+L ++ Q G + + Sbjct: 94 AQEHVEQYYQVDPSMFHPAADFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K + G + L + N Y V++ Sbjct: 153 VDDDVTVKRFEKK-GNVVYLHAENEDYSPIKVDL 185 >gi|298346790|ref|YP_003719477.1| SOS mutagenesis protein UmuD [Mobiluncus curtisii ATCC 43063] gi|304389506|ref|ZP_07371469.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236851|gb|ADI67983.1| SOS mutagenesis protein UmuD [Mobiluncus curtisii ATCC 43063] gi|304327316|gb|EFL94551.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 146 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + SM+ GD LI++ +++ + G+ ++ Sbjct: 43 YFDRDIDLNEHLIRNRPATFLVRVAGDSMINAGISDGDELIVDRSLEASEGNVVIAIID- 101 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G++ K L +L N YP + S+++ + Sbjct: 102 GEMTVKRLHFGTHGP-ELHPANPTYP--ILHPSELQIWGVV 139 >gi|223932319|ref|ZP_03624322.1| putative phage repressor [Streptococcus suis 89/1591] gi|302023839|ref|ZP_07249050.1| phage repressor-like protein [Streptococcus suis 05HAS68] gi|223899000|gb|EEF65358.1| putative phage repressor [Streptococcus suis 89/1591] Length = 266 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 73/264 (27%), Gaps = 59/264 (22%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW--PSTESIFKILAATN 66 + + + ++ L+ A +GL + ++ + P+ +++ K+ Sbjct: 3 LGDILKEYRSKNKLSMDKFAELSGLTKGYISMLEKNQHPKTKKALLPTMDTLEKVAKGMA 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKE---------IPLLYFPPSGSGGFFDSGVFPTG----- 112 ++ +L++ S+ P + + G F + G Sbjct: 63 ISVGELIEQLDSNQDIALTITPSQFKLFQQPIHPEVQTLDNELKGDFHAQWLTFGQEQLA 122 Query: 113 --------------NKWNTVGVPEIRSP----------------------HNGIYAIQTQ 136 + + ++ P ++ I Q+ Sbjct: 123 AMQTTSITPSASILHLDDYRERIDLPVPGKVSAGTGYWQDTDMNNLVSFYNDEIPDNQSY 182 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 DT + SM P GD L + + + G+ K L Sbjct: 183 DTIAQVVGDSMAPHIEDGDYLFIRLTPHIPLNTIGI-FSVNGENFVKKFKGD-----YLQ 236 Query: 197 SLNCCYPVDTV-EMSDIEWIARIL 219 SLN Y DI I +++ Sbjct: 237 SLNSDYDDIYFSPEDDIRPIGQVV 260 >gi|126641222|ref|YP_001084206.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978] gi|293608694|ref|ZP_06690997.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|126387106|gb|ABO11604.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978] gi|292829267|gb|EFF87629.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 164 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + +T K SML D LI++ ++ GD ++ + Sbjct: 61 LDMNEHLIKNETATFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVIALID-NEFTV 119 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ L + N Y ++ I ++ Sbjct: 120 KRLMIDEKGQ-WLKAENPEYKNIYLQEGQELIIWGVV 155 >gi|50085790|ref|YP_047300.1| component of DNA polymerase V [Acinetobacter sp. ADP1] Length = 208 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 5/104 (4%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + + K SML D LI++ +I GD ++ Sbjct: 98 VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 156 Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + L + N + ++ I ++ Sbjct: 157 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVIWGVV 200 >gi|258616309|ref|ZP_05714079.1| LexA repressor [Enterococcus faecium DO] Length = 68 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 3/63 (4%) Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +I+ GD ++ + K + L N + + + Sbjct: 1 MIVRKQETAQNGDIVIAMTAEDEATCKRFYKEKN-FFRLQPENDLLEPIIL--DQVSILG 57 Query: 217 RIL 219 R++ Sbjct: 58 RVV 60 >gi|220923486|ref|YP_002498788.1| putative phage repressor [Methylobacterium nodulans ORS 2060] gi|219948093|gb|ACL58485.1| putative phage repressor [Methylobacterium nodulans ORS 2060] Length = 220 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 57/206 (27%), Gaps = 32/206 (15%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ S LAR+ G + ++ S E + + + Sbjct: 13 LAAALQASGVSASELARRLGTSRQNVHRWADG---------SRELLPPVAQLIASKLGVS 63 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + L+ + + +P+ S Sbjct: 64 ASALLLMEEAGPSYIRVAGLVGAGGHINNDVTQVHQNEAVRVRINIPLPDGLS------- 116 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDIVAKVLIS-R 188 ++ SMLP Y GD++I+ GD L+K G+ K ++ Sbjct: 117 ------AYEVWGDSMLPRYDPGDLIIVTDQPVPVSRVVGDVALVKTADGNRYLKRVLRGS 170 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEW 214 L S N M D+E Sbjct: 171 EPDLYTLESYNAS------PMEDVEI 190 >gi|260222825|emb|CBA32780.1| hypothetical protein Csp_B15740 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 90 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%) Query: 139 RHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 K + SM GD+L + + G ++ + ++ K R I+L + Sbjct: 1 MLKVRGMSMRDAGIMDGDLLAVQATKDAKNGQIIVAR-LGEEVTVKRF-RRNKHLIELHA 58 Query: 198 LNCCYPVDTVEMSD 211 N Y VE + Sbjct: 59 ENPDYQTIVVEPGE 72 >gi|182436872|ref|YP_001824591.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777467|ref|ZP_08236732.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465388|dbj|BAG19908.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657800|gb|EGE42646.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 210 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + RH +T + LA + G+ ++ ++ + G R P+ E + + Sbjct: 26 VGPRLRELRRRHGMTLAELAERTGISESTLSRLE-----GGTRKPTLELLLPLAEVHAVP 80 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ P + + L + P G + +T Sbjct: 81 LDELVGAPRTGDPRIHLRPVTRDGLTYVPLSRPGGVQAHKLLIPPGPDTEPTLRTHEGFE 140 Query: 129 GIYAIQTQDTRH 140 +Y + + Sbjct: 141 WLYVLAGRLRLI 152 >gi|127511903|ref|YP_001093100.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126637198|gb|ABO22841.1| transcriptional regulator, XRE family with cupin sensor [Shewanella loihica PV-4] Length = 182 Score = 61.7 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 47/153 (30%), Gaps = 9/153 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DIGANLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + S + + LL +P P Sbjct: 57 SLVDFFSIEESMPTEQKVVYRSGELLDIGDGNLDYKLIGRDYPNRAMSVMNEVYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 + + ++ + GD + + Sbjct: 117 GEEMLQHEGEEAAMVIEGQL---EITIGDEVYV 146 >gi|269103888|ref|ZP_06156585.1| SOS-response repressor and protease LexA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163786|gb|EEZ42282.1| SOS-response repressor and protease LexA [Photobacterium damselae subsp. damselae CIP 102761] Length = 208 Score = 61.7 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 61/215 (28%), Gaps = 32/215 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIKAKIEDSGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK----------GVLEIVPGASRGIRLLVGANDSDVEESGLPLIGQVAAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 96 AQEHVECHYDVDPTLFKPRADFLLRVNGMSMKNIGIMDGDLLAVHKTQDVRNGQVV-VAR 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + GR + L + N + V++ Sbjct: 155 VDDDVTVKRLDKQ-GRKVLLHAENEEFDPIVVDLE 188 >gi|153000861|ref|YP_001366542.1| putative prophage repressor [Shewanella baltica OS185] gi|160875569|ref|YP_001554885.1| peptidase S24/S26 domain-containing protein [Shewanella baltica OS195] gi|151365479|gb|ABS08479.1| putative prophage repressor [Shewanella baltica OS185] gi|160861091|gb|ABX49625.1| peptidase S24 and S26 domain protein [Shewanella baltica OS195] gi|315267756|gb|ADT94609.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica OS678] Length = 139 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + V + + K Q SM GDIL+++ ++Q GD ++ Sbjct: 32 DYVE--QTLDLNELCIKHPAATFFVKVQGDSMIEAGIFSGDILVVDRSLQPAHGDTVVAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+ K L R + L+ N + + + S++ + Sbjct: 90 VN-GEFTVKQLQLRP--VVQLLPRNALFSPIAINDESELNIFGVV 131 >gi|126174565|ref|YP_001050714.1| putative prophage repressor [Shewanella baltica OS155] gi|217973182|ref|YP_002357933.1| peptidase S24 and S26 domain-containing protein [Shewanella baltica OS223] gi|304408934|ref|ZP_07390555.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica OS183] gi|307302937|ref|ZP_07582692.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica BA175] gi|125997770|gb|ABN61845.1| UmuD protein. Serine peptidase. MEROPS family S24 [Shewanella baltica OS155] gi|217498317|gb|ACK46510.1| peptidase S24 and S26 domain protein [Shewanella baltica OS223] gi|304352755|gb|EFM17152.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica OS183] gi|306913297|gb|EFN43719.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica BA175] Length = 139 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + V + + K Q SM GDIL+++ ++Q GD ++ Sbjct: 32 DYVE--QTLDLNELCIKHPAATFFVKVQGDSMIEAGIFSGDILVVDRSLQPAHGDTVVAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+ K L R + L+ N + + + S++ + Sbjct: 90 VN-GEFTVKQLQLRP--VVQLLPRNALFSPIAINDESELNIFGVV 131 >gi|154483803|ref|ZP_02026251.1| hypothetical protein EUBVEN_01507 [Eubacterium ventriosum ATCC 27560] gi|149735294|gb|EDM51180.1| hypothetical protein EUBVEN_01507 [Eubacterium ventriosum ATCC 27560] Length = 240 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 25/235 (10%) Query: 3 SFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++K I E I+R+ + N + LA +A L S K + G+ P+ +I K+ Sbjct: 7 KITNKNIMVENINRLLYQKNWSIRQLADEAELPYESVKKL----VGGKVNNPTIYTISKV 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-----------FP 110 A N +I +L + + + L + P Sbjct: 63 CDALNCSIDYILGRSVINTIDKKSLPPRVFNLLVEIAYFESRIADYNKSHKTDCISVLTP 122 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQ-----DTRHKTQDTSMLPLYRKGDILILNSAIQV 165 TG + + I + I A + K ++ P Y DIL++ Sbjct: 123 TGYVQDGMVFDSISTNIVNISAYKKDFGDIVLCGIKIVGRNLSPTYFDNDILLIGKDRFP 182 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219 G+ + + + I G ++L +N ++ D+ + R+L Sbjct: 183 ESGETGIFLI-GNKVYIRKYI--PGIRLELAPINGDKNSLFIDNIDDVHYFGRVL 234 >gi|10957326|ref|NP_058350.1| putative UV protection protein [Salmonella typhi] gi|260752149|ref|YP_003237664.1| putative UV protection and repair protein [Escherichia coli O111:H- str. 11128] gi|7800379|gb|AAF69975.1|AF250878_136 putative UV protection protein [Salmonella enterica subsp. enterica serovar Typhi] gi|257767619|dbj|BAI39113.1| putative UV protection and repair protein [Escherichia coli O111:H- str. 11128] Length = 165 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 4/93 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + + + SM+ G IL+++ ++ G ++ G+ K+L Sbjct: 63 HDFVVRNRPATFFVRASGLSMVDAGINDGAILVVDRSLTAEHGSIVVALVD-GEFTVKIL 121 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + LM N + V +E + Sbjct: 122 QTFP--KLMLMPSNPAFKPIPVNPDTLEIWGVV 152 >gi|18466630|ref|NP_569438.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|160431843|ref|YP_001551957.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|16505946|emb|CAD09832.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|145849064|emb|CAM91628.1| putative serine protease (putative UV protection protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|159885384|dbj|BAF92988.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica serovar Choleraesuis] Length = 144 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 4/93 (4%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + + + SM+ G IL+++ ++ G ++ G+ K+L Sbjct: 42 HDFVVRNRPATFFVRASGLSMVDAGINDGAILVVDRSLTAEHGSIVVALVD-GEFTVKIL 100 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + LM N + V +E + Sbjct: 101 QTFP--KLMLMPSNPAFKPIPVNPDTLEIWGVV 131 >gi|294636509|ref|ZP_06714877.1| toxin-antitoxin system, antitoxin component, Xre family [Edwardsiella tarda ATCC 23685] gi|291090232|gb|EFE22793.1| toxin-antitoxin system, antitoxin component, Xre family [Edwardsiella tarda ATCC 23685] Length = 141 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 9/115 (7%) Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCG 168 N + + + I + + SM P + +G +++++ A V Sbjct: 23 DNAYTLHDAKRRIKTIKRASDKAFWLIVEGASMTAPTGTSPSFPEGMLILVDPAQNVEIN 82 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 D + + K LI G + L LN +P+ + I +++ SQ Sbjct: 83 DFCIAVMNGNEFTFKRLIRDGGINY-LQPLNPQFPLLNCANG-CQIIGKVVM-SQ 134 >gi|326576998|gb|EGE26894.1| peptidase S24-like protein [Moraxella catarrhalis O35E] Length = 98 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%) Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 +D SM+P + GD + ++ + R+ + K L + + Sbjct: 1 NAFAVTARDDSMMPYVQDGDTIYIDKGRKEIKDGRIFAIRFGELCLCKRLYRLPDGGVRI 60 Query: 196 MSLNCC-YPVDT-----VEMSDIEWIARILWAS 222 +S N +P + + E I + S Sbjct: 61 VSDNSDEFPEQVATKQQISDGEFEVIGWVWSVS 93 >gi|166366552|ref|YP_001658825.1| SOS-response transcriptional repressor [Microcystis aeruginosa NIES-843] gi|166088925|dbj|BAG03633.1| SOS-response transcriptional repressor [Microcystis aeruginosa NIES-843] Length = 204 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 5/180 (2%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I PS + + + + Q + E + L Sbjct: 11 QQELYDWLIEYISTTQHAPSIRQMMRAMNLRSPAPIQSRLERLRAKGYIDWTEGKARTLR 70 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153 G G G E + + + + SM Sbjct: 71 ILKQPVQGLPVLGAIAAGGLVEPFTDVEEKLDLSNLLQRSQDCYALRVSGDSMIEDHIAD 130 Query: 154 GDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD++I+ S V+ G+ + + K + G I L N Y T Sbjct: 131 GDLVIMRSLTGNEAVSNGEIVAARVEGHGTTLKRFY-QEGEIITLQPSNQKYQPITANTE 189 >gi|126662465|ref|ZP_01733464.1| putative UmuD/RumA DNA repair protein [Flavobacteria bacterium BAL38] gi|126625844|gb|EAZ96533.1| putative UmuD/RumA DNA repair protein [Flavobacteria bacterium BAL38] Length = 145 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 S + + + K SM+ GDIL+++ +++ + G+ Sbjct: 43 LSLDHLLIKNREATFYAKASGNSMIGAGIDDGDILVIDRSLEPRNNAIAVCFID-GEFTV 101 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + + + L+ N Y V + I I+ Sbjct: 102 KRI-KKENDEVYLIPENAQYKAIKVAPENELIIWGIV 137 >gi|300309564|ref|YP_003773656.1| peptidase S24 LexA-like protein [Herbaspirillum seropedicae SmR1] gi|300072349|gb|ADJ61748.1| peptidase S24 LexA-like protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 +Q +M P +GD+L+L++ + D L G +V + L R I Sbjct: 174 PSQLALIDMNGDAMAPTVAQGDLLLLDTRSAQSWRDGLYAIAVNGMLVVRRLCQRLSGQI 233 Query: 194 DLMSLNCCYPVDTVEMSDI---EWIARILW 220 ++ + N Y V+T++ + + + R++W Sbjct: 234 EIGADNPFYGVETLDAQQVARLDIVGRVVW 263 >gi|299769832|ref|YP_003731858.1| DNA polymerase V component [Acinetobacter sp. DR1] gi|298699920|gb|ADI90485.1| DNA polymerase V component [Acinetobacter sp. DR1] Length = 165 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + +T K SML D LI++ ++ GD ++ D Sbjct: 61 LDMNEHLIKNETATFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVVALID-NDFTV 119 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ L + N Y + I ++ Sbjct: 120 KRLMIDEKGQ-WLKAENPDYKDIHLLDGQELIIWGVV 155 >gi|149196416|ref|ZP_01873471.1| putative SOS mutagenesis protein UmuD [Lentisphaera araneosa HTCC2155] gi|149140677|gb|EDM29075.1| putative SOS mutagenesis protein UmuD [Lentisphaera araneosa HTCC2155] Length = 127 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + + SM GDIL+++ ++Q D ++ G+ K L Sbjct: 30 HDHLIKHPCASFFLRVGGESMKGAGIYPGDILVVDRSLQAQKSDIVIAII-EGEFTVKQL 88 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI 212 + L++ N Y + +I Sbjct: 89 KFNQHGKPRLIAANRAYAPIECDNIEI 115 >gi|11640723|gb|AAG39344.1| RulA [Pseudomonas syringae pv. pisi] Length = 141 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 8/129 (6%) Query: 95 FPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150 SG F S P G + + + A K SM Sbjct: 9 LSESGKVIPFYSFKIPAGFPNPAADHIEQDSSFDRLMDLRA--PHIYVAKIDGDSMEGAK 66 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 +++++ + + G ++ + + K+LI + + L S N YP + Sbjct: 67 IFHDSLVVVDRSRTPSSGSIVIAALN-NEPLCKILILQGDD-VVLKSANPAYPARHILEG 124 Query: 211 DIEWIARIL 219 D I ++ Sbjct: 125 DELSIWGVV 133 >gi|327405551|ref|YP_004346389.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321059|gb|AEA45551.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 273 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 26/233 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + +A GL +S++ + E P +++ + + Sbjct: 2 KLGNNLKLVRKSKKKSQEEVAADLGLTRSSYSGYENQIAE-----PGIDTLIALSSYYGV 56 Query: 68 TICQ------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 I S L + + + Sbjct: 57 PIDALLTKDFSTFTDSDWTTISSGLYADINGNNLRVLTSLVDADDNEMIELIPQQARAGY 116 Query: 116 NTVGVPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCG 168 T +++ + SM P+ ++ + + V G Sbjct: 117 TTGYADPDYLKVLPTFSLPFLSKNRKYRSFPIVGDSMPPVDEGSFVVAEYIQNWGSVRNG 176 Query: 169 DRLLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + IV K++ +S +L S N Y V +++I + + + Sbjct: 177 TPCIVVTKDDGIVFKIVNNFIETQQSFELCSTNPLYLPYYVNVNEIVEMWKFV 229 >gi|256556935|gb|ACU83558.1| SOS-response transcriptional repressor [uncultured bacterium HF130_AEPn_1] Length = 204 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 10/114 (8%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G E P G + + + SM + D++ + Sbjct: 90 VSAGTGILAEENVETYLPDLG----GGESFVLRVRGDSMKDAGIYEDDLVYVEQKALPRN 145 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218 GD ++ + KV + I L+ N Y V + D I + + Sbjct: 146 GDIVVAL-VENEATIKVYENHEN-VIRLIPRNSSYKVQSFNSEDEHRINIVGVV 197 >gi|325267659|ref|ZP_08134310.1| hypothetical protein HMPREF9098_2038 [Kingella denitrificans ATCC 33394] gi|324980783|gb|EGC16444.1| hypothetical protein HMPREF9098_2038 [Kingella denitrificans ATCC 33394] Length = 270 Score = 61.7 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 9/169 (5%) Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K A T I + + ++ ++ ++ + + G + T Sbjct: 97 KTPARTGGGIPEFMRPMVAEYDDWAAEQGTDSIVPVRYHTNVFGSAGNGYAFGEELRTEA 156 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + S + + + + SM P ++ G + + + + Sbjct: 157 MWFRSSFFDVLGVKPAHCFCTRVKGDSMYPTLTDRGTVL-WQMTSRYTGAGIYLFRQVDE 215 Query: 180 IVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDI-----EWIARILW 220 + K L G + ++S N YP +T+++ ++ E R LW Sbjct: 216 LRIKRLQQINGHTFSVISDNANKDIYPTETLDLREMQDYEFEVYGRYLW 264 >gi|9635195|ref|NP_058469.1| repressor [Staphylococcus phage PVL] gi|21283665|ref|NP_646753.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|29028670|ref|NP_803358.1| cI-like repressor [Staphylococcus phage phi13] gi|49486810|ref|YP_044031.1| putative repressor [Staphylococcus aureus subsp. aureus MSSA476] gi|88195908|ref|YP_500719.1| repressor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|258444476|ref|ZP_05692809.1| repressor [Staphylococcus aureus A8115] gi|282929202|ref|ZP_06336778.1| CI-like repressor [Staphylococcus aureus A9765] gi|300912914|ref|ZP_07130352.1| bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|3341939|dbj|BAA31905.1| repressor [Staphylococcus phage PVL] gi|18920594|gb|AAL82333.1| cI-like repressor [Staphylococcus phage phi13] gi|21205106|dbj|BAB95801.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|49245253|emb|CAG43726.1| putative repressor [Staphylococcus aureus subsp. aureus MSSA476] gi|87203466|gb|ABD31276.1| repressor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257850367|gb|EEV74316.1| repressor [Staphylococcus aureus A8115] gi|282591847|gb|EFB96894.1| CI-like repressor [Staphylococcus aureus A9765] gi|300885692|gb|EFK80899.1| bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|320139618|gb|EFW31487.1| peptidase S24-like domain protein [Staphylococcus aureus subsp. aureus MRSA131] Length = 256 Score = 61.7 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 33/258 (12%), Positives = 68/258 (26%), Gaps = 48/258 (18%) Query: 6 HKKIWEAIDRMAERHNLTPSGL-------ARKAGLD--PTSFNKSKRFGIEGRNRWPSTE 56 +K+ + + + NL + +K G+ ++ ++ Sbjct: 2 REKVSNRLKHIMKIRNLKQVDIINKSKPYQKKLGISLSKSTLSQYINDVQS--PDQDRIY 59 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF------- 109 + K L + + + E + + S V Sbjct: 60 LLSKTLNVGEAWLMGYDVDSYRVPDEERQDETIMSKINNIFSQLTPPRQENVLNYANEQL 119 Query: 110 ------------------------PTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKT 142 TG +I +T D Sbjct: 120 EEQNKVTSIDGYKESKLVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILV 179 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P+ ++G + + G L+ G + K + I+L+SLN Y Sbjct: 180 NGDSMEPMLKQGTYAFIKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKY 237 Query: 203 PVDTV-EMSDIEWIARIL 219 V SDI+ + +++ Sbjct: 238 DDIKVASFSDIKVMGKVV 255 >gi|313200782|ref|YP_004039440.1| phage repressor [Methylovorus sp. MP688] gi|312440098|gb|ADQ84204.1| putative phage repressor [Methylovorus sp. MP688] Length = 189 Score = 61.7 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 4/85 (4%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 M PL GD + ++ GD L + G I K + R S+ + Sbjct: 96 LVHVYGDGMEPLLSDGDEVFIDIRCNAFDGDALYAIRQHGRITIKRVQVRLDGSVAIKYD 155 Query: 199 NC-CYPVDTVEMS---DIEWIARIL 219 N +P++ D+E + +++ Sbjct: 156 NDGGFPIEVYSAENAKDVEVVGKVM 180 >gi|326319247|ref|YP_004236919.1| peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376083|gb|ADX48352.1| Peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp. avenae ATCC 19860] Length = 231 Score = 61.7 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 9/177 (5%) Query: 51 RWPSTESIFKILAATNETICQLLDL-----PFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 R S +++ I + + E+ L+ Sbjct: 49 RAVSDKTVRHIESLRGMHAWFSQPPAPAGIRETSVAYDFDAGPEMYELFPVSLHLRPGIA 108 Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + R + + + M P + GDI+++N++ Sbjct: 109 DYAIWPDETDEDAPITFHRHWLERRGYMPQCLLAIRVRGCGMEPSIQAGDIVVVNTSDTT 168 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219 ++ G+++ + + G L N YP D I R++ Sbjct: 169 LRDGQVFAINGFGEVLLRRVQRD-GGRWWLSCDNPDQARYPRKAWAEPDCIPIGRLV 224 >gi|254468433|ref|ZP_05081839.1| LexA/MucA/RumA/RuvA family protein [beta proteobacterium KB13] gi|207087243|gb|EDZ64526.1| LexA/MucA/RumA/RuvA family protein [beta proteobacterium KB13] Length = 194 Score = 61.7 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 3/100 (3%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + + + SM+ DI+I++ + + D +L G+ Sbjct: 89 ESRLDLNEYLISQTEATFFVRIKGDSMIDAGILDNDIVIVDRSKSASINDIVLASID-GE 147 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 KVL + LM N + +E I ++ Sbjct: 148 FTVKVLAK-NNKRPYLMPANKEFKPIYIEEGSQFEIWGVV 186 >gi|157100474|emb|CAG69478.2| component of DNA polymerase V [Acinetobacter sp. ADP1] Length = 203 Score = 61.7 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 5/104 (4%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + + K SML D LI++ +I GD ++ Sbjct: 93 VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 151 Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + L + N + ++ I ++ Sbjct: 152 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVIWGVV 195 >gi|284800199|ref|ZP_06390602.1| component of DNA polymerase V [Neisseria subflava NJ9703] gi|284795726|gb|EFC51073.1| component of DNA polymerase V [Neisseria subflava NJ9703] Length = 193 Score = 61.7 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 4/93 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + + ++ SML K DI+I++ + GD + + + Sbjct: 83 DYLDFNEYLITNPSATFAARSGGYSMLDAGIGKDDIMIIDRSKTPKHGDIV-MADVGNEF 141 Query: 181 VAKVLISRRGRSIDLMSLNC--CYPVDTVEMSD 211 K L GR +L S N YP + SD Sbjct: 142 TIKRLYKVPGRKPELHSENASGEYPDFIPDDSD 174 >gi|332711665|ref|ZP_08431596.1| SOS-response transcriptional repressor, LexA [Lyngbya majuscula 3L] gi|332349643|gb|EGJ29252.1| SOS-response transcriptional repressor, LexA [Lyngbya majuscula 3L] Length = 210 Score = 61.7 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 42/177 (23%), Gaps = 6/177 (3%) Query: 35 PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 I + PS + + + + Q + E + + Sbjct: 8 QQELYDWLVNYIRVSHHAPSIRQMMRAMNLRSPAPIQSRLEHLRSKGYIDWTEGKARTIR 67 Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153 + G G G +G + + SM L + Sbjct: 68 LLRHSNLGVPVLGAIAAGGLVEPFTDTVEELNISGFFHQPGN-FALRVTGDSMIEDLITE 126 Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 GD++I+ G + + K + G + L N Y V Sbjct: 127 GDVVIMRPVPDPDDIKNGLIVAARVDGHGTTLKRFYRK-GHKVTLKPSNAKYHPIEV 182 >gi|262278728|ref|ZP_06056513.1| SOS-response transcriptional repressor [Acinetobacter calcoaceticus RUH2202] gi|262259079|gb|EEY77812.1| SOS-response transcriptional repressor [Acinetobacter calcoaceticus RUH2202] Length = 203 Score = 61.3 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ ++ GD ++ Sbjct: 92 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSLPAKSGDIVIALID- 150 Query: 178 GDIVAKVLISRRG---RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ I L + N Y +E I ++ Sbjct: 151 NDFTVKRLMIDNNYHPPKIWLKAENSDYQNIYIEEGQELVIWGVV 195 >gi|300717122|ref|YP_003741925.1| DNA polymerase V, subunit D [Erwinia billingiae Eb661] gi|299062958|emb|CAX60078.1| DNA polymerase V, subunit D [Erwinia billingiae Eb661] Length = 139 Score = 61.3 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 13/134 (9%) Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 + + + F + GF + V + + + + Sbjct: 1 MHMHQLVVSPRPLTIPLFVERVACGFPSPAA-------DYVE--SRIDLNELLVSHPSAT 51 Query: 138 TRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM GD+L+++S+++ GDR++ G+ K L S+ L+ Sbjct: 52 YFIRAAGNSMIEGNINDGDMLVVDSSLKPQHGDRVIAAID-GEFTLKKLQLTP--SVKLL 108 Query: 197 SLNCCYPVDTVEMS 210 +N Y ++ Sbjct: 109 PMNPSYAAIDIDDE 122 >gi|57234348|ref|YP_181599.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] gi|57224796|gb|AAW39853.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] Length = 222 Score = 61.3 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 13/219 (5%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T S I E I + TP L ++GL K ++ + + + K+ Sbjct: 8 TMMS---IGEKIREFRKARGWTPEYLGSRSGLSGQYIRKLEKGERQ----SITLTTASKL 60 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 +A +L+ + + F + G P N + Sbjct: 61 SSAFGIEPSKLISESEATLPRQIEDILTEIRSVFQRLETVEVCVHGCMPERRPRNELKYK 120 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + P G+ + D + G+++++ + + G+ L I Sbjct: 121 SLLIP-RGLVENLKNIYALQVDDNHLEHFGIYPGEMVVIQAGQAIKDGN-LYACQIGQGI 178 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L + + N + +++I+ + +IL Sbjct: 179 YGYHLY-ITDNGLRISDGNGT--NRNLPLTEIKVLGKIL 214 >gi|187960704|gb|ACD43619.1| TumD [Tetrathiobacter kashmirensis] Length = 142 Score = 61.3 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 5/88 (5%) Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 T + SM GD LI++ ++ ++ + GD+ K L + Sbjct: 50 PTSTFYLCVKGHSMKEAGIEDGDHLIVDRSLTAKHNSIVIAEID-GDVTVKRLHKK-NGV 107 Query: 193 IDLMSLNCCYPVDT-VEMSDIEWIARIL 219 I L + N YP V + I ++ Sbjct: 108 IRLKAANLTYPDIVPVPGQEW-MIWGVV 134 >gi|194334990|ref|YP_002016850.1| peptidase S24 and S26 domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312808|gb|ACF47203.1| peptidase S24 and S26 domain protein [Prosthecochloris aestuarii DSM 271] Length = 150 Score = 61.3 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 6/112 (5%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 FP+ + + + + + + +SM GD+LI++ +++ Sbjct: 36 FPSPAEDDE---ELSLDLNKALIKHPAATFYARVKGSSMRDAGIVDGDLLIVDKSLEAKD 92 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD + G+ K + R ++ LM N + + + I+ Sbjct: 93 GDIAVCFLD-GEFTVKRIA-LRQDALFLMPANDEFQPIRITEESDFLVWGIV 142 >gi|332880955|ref|ZP_08448625.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681129|gb|EGJ54056.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 148 Score = 61.3 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 10/99 (10%), Positives = 32/99 (32%), Gaps = 3/99 (3%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + + SM GD+++++ +++ GD ++ G+ Sbjct: 41 GIDLNKELVRHRETTFYARVSGHSMSGAGIEDGDLVVVDKSLEARTGDYVVACID-GEFT 99 Query: 182 AKVLISRRGRSI-DLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ N + + + + ++ Sbjct: 100 LKQFRIDAANRCAWLLPANEEFQPIKITGENDFRVWGVV 138 >gi|294787630|ref|ZP_06752874.1| peptidase, S24 (LexA) family [Simonsiella muelleri ATCC 29453] gi|294483923|gb|EFG31606.1| peptidase, S24 (LexA) family [Simonsiella muelleri ATCC 29453] Length = 100 Score = 61.3 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 ++ + + SM P ++ + V + + + + ++ K L + Sbjct: 3 PSRCFCTRVKGDSMHPTIIDRGTVM-WAMQSVYTSEGIYLFRQVNELRIKRLQRVNSHTY 61 Query: 194 DLMSLNCC-YPVDTVEMSDI-----EWIARILW 220 ++S N YPV+T+++ ++ E R LW Sbjct: 62 RIISDNKAFYPVETLDLREMESHEFEIYGRYLW 94 >gi|283778285|ref|YP_003369040.1| SOS-response transcriptional repressor, LexA [Pirellula staleyi DSM 6068] gi|283436738|gb|ADB15180.1| SOS-response transcriptional repressor, LexA [Pirellula staleyi DSM 6068] Length = 211 Score = 61.3 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 4/122 (3%) Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 + I L + G +G G E + + + S Sbjct: 75 ARAIELAPEIVAEDKGLPLAGTVAAGLTNLAFEQNERIDFAEMF--SKKNLFVLQVRGDS 132 Query: 147 M-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 M GD +++ N G ++ + G+ K + + L N Sbjct: 133 MIEAHISDGDYVVVKKQKSANAGQMVVAQSPEGEATLKYWFP-EAKGVRLQPANSTMQPI 191 Query: 206 TV 207 + Sbjct: 192 YL 193 >gi|193214005|ref|YP_001995204.1| XRE family transcriptional regulator [Chloroherpeton thalassium ATCC 35110] gi|193087482|gb|ACF12757.1| transcriptional regulator, XRE family [Chloroherpeton thalassium ATCC 35110] Length = 270 Score = 61.3 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 71/270 (26%), Gaps = 64/270 (23%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--------------------- 44 + I + + + L ++ G+ +S ++ + Sbjct: 2 EEMIGDRFKAVRKALMLNQDAFSKDIGISQSSLSEIENGKFSPGSDIILSLCRYFNIDSN 61 Query: 45 ---GIEGR---NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK---------- 88 G+ + P +E+I + + QL + + + + Sbjct: 62 WLLTGTGKMFLEKKPESENISEAGDEPSAADWQLQAEQAAKTAASRSESEALAGDVAALK 121 Query: 89 -----------------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 E ++ P V + + +P + H Sbjct: 122 KQVNELFGLVRGRMDVLEDAMVEIPVFMHRVSAGPAVASSSEIEEYIKLPTVLLKH---- 177 Query: 132 AIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + + SM+ GD+LI++ + ++ G+ K L+ Sbjct: 178 --PKRSYAVRASGNSMVGAGIHSGDLLIVDQEAAIKHKCIVI-ASINGEQTVKRLL-IED 233 Query: 191 RSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + L N Y + + + ++ Sbjct: 234 GELVLAPENSHYQSTPITKEMNFSILGVVM 263 >gi|223940256|ref|ZP_03632115.1| SOS-response transcriptional repressor, LexA [bacterium Ellin514] gi|223891083|gb|EEF57585.1| SOS-response transcriptional repressor, LexA [bacterium Ellin514] Length = 207 Score = 61.3 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 30/221 (13%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I + ++ +TPS +A G R E Sbjct: 1 MHKITRRQNQILEYILKCQQKDGITPSMRDIAAHFGF------------RSPRTVTDHVE 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K + + + + ++ + + Sbjct: 49 ALRKK----GALVSEPGLARTLRVVSPLQAFRKRVVDIPVFGSIPAGLAENRYEEARGCV 104 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKP 175 ++ V + + + + SM+ GDI+IL ++ GD ++ Sbjct: 105 SIDVGTLNIKPTT------RTFALEVRGDSMIGKNICPGDIVILEHGVEAKVGD-VVAAL 157 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + K + R ++ L + N Y + ++ Sbjct: 158 IDNESTLKTYVKERSKTY-LRAENPKYSKL-IPADELVIQG 196 >gi|163751558|ref|ZP_02158780.1| transcriptional regulator, putative [Shewanella benthica KT99] gi|161328566|gb|EDP99719.1| transcriptional regulator, putative [Shewanella benthica KT99] Length = 184 Score = 61.3 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 59/194 (30%), Gaps = 18/194 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H I ++ + ++ L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 HLDIGASLKVIRKQKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVNSLKKVLSGL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIR 124 + ++ + + + + LL +P P Sbjct: 57 SLSLVDFFSMEGNTQSEAKVVYRSDDLLDIGDGNLDYKLIGRDYPNRAMSVMSETYPPGS 116 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + ++ + GD + + + GD + Sbjct: 117 DTGAEMLKHEGEEAAMVIEGRL---ELTVGDEVFI-----LEAGDSYYFNSESPH----R 164 Query: 185 LISRRGRSIDLMSL 198 + L+S Sbjct: 165 FRNPFDEECRLVSA 178 >gi|330448347|ref|ZP_08311995.1| peptidase S24-like family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492538|dbj|GAA06492.1| peptidase S24-like family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 126 Score = 61.3 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 4/98 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ GD+L+++ A V G ++ + + Sbjct: 24 ESLDLDEYLIRHPNATFFLRASGESMIGAGIYDGDLLVVDRAETVAPGRIVIARI-YDEF 82 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ L + N + D E + Sbjct: 83 TCKRLVRHE-GVWWLKAENPAMKSFPLP-QDAEIFGVV 118 >gi|330946623|gb|EGH47614.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. pisi str. 1704B] Length = 193 Score = 61.3 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 46/196 (23%), Gaps = 16/196 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 2 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 61 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + ++ + G + + Sbjct: 62 GPKHPNECANENTGGDTRLIIHQARNVSRGDVEIQIFMEAESTHGVGKTVLAEAPG--QK 119 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P + GI SM + G IL ++ + + Sbjct: 120 IRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 177 Query: 178 GDIVAKVLISRRGRSI 193 G + + L + Sbjct: 178 GILRVRYLYRLPNGGL 193 >gi|330881144|gb|EGH15293.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 269 Score = 61.3 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 46/196 (23%), Gaps = 16/196 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57 + + + +LT + A + P N KR R RW T Sbjct: 5 GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + +Y + G + + Sbjct: 65 GPKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P GI SM + G IL ++ + + Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180 Query: 178 GDIVAKVLISRRGRSI 193 G + + L + Sbjct: 181 GILRVRYLYRMPNGGL 196 >gi|118594372|ref|ZP_01551719.1| putative prophage repressor [Methylophilales bacterium HTCC2181] gi|118440150|gb|EAV46777.1| putative prophage repressor [Methylophilales bacterium HTCC2181] Length = 191 Score = 61.3 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 8/121 (6%) Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 + S P G + V + ++ + A + + SM+ GDI+I Sbjct: 67 AWFSHKVPAGFPSPADDHVE--KRLDLNDYLIAQKEATFFVSIKGDSMIDASIHDGDIVI 124 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ + GD +L G+ K L L+ N Y + + I + Sbjct: 125 VDRSKDAKIGDIVLASID-GEFTVKTLAKHL-SHPRLLPANSEYKYIDITEGMVFEIWGV 182 Query: 219 L 219 + Sbjct: 183 V 183 >gi|333031394|ref|ZP_08459455.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides coprosuis DSM 18011] gi|332741991|gb|EGJ72473.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides coprosuis DSM 18011] Length = 147 Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 3/99 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + + + SM+ GDIL+++ +++ D + G+ Sbjct: 40 ASIDLNKELVKHPSTTFYGRVKGDSMIDANVFDGDILVIDKSLEPQSNDMAVCFID-GEF 98 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K I + L+ N YP + I I+ Sbjct: 99 TLK-FIEIHDDIVCLIPANPSYPTMKITSDHELIIWGIV 136 >gi|117621500|ref|YP_855615.1| protein UmuD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562907|gb|ABK39855.1| protein UmuD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 147 Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 4/89 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + SM + GD+L+++ ++ GD ++ Sbjct: 33 YLEGKLDLNTHCVPHPAATFYLRAEGESMTRVGIFPGDLLVVDKSLTPRHGDVVIALLD- 91 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 G K L + + L+ N + Sbjct: 92 GGFTVKTLQLKP--RLRLLPANPAFAPID 118 >gi|110597365|ref|ZP_01385652.1| Peptidase S24, S26A and S26B [Chlorobium ferrooxidans DSM 13031] gi|110340909|gb|EAT59380.1| Peptidase S24, S26A and S26B [Chlorobium ferrooxidans DSM 13031] Length = 150 Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + + +SM+ +GDIL+++ ++ GD + Sbjct: 40 ADDYMEL--SLDLNKALVRHPAATFYARVKGSSMIDAGILEGDILVIDKSLDPKDGDIAI 97 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K ++ + LM N + + + + ++ Sbjct: 98 CFLD-GEFTVKRIMQHADG-LLLMPANEEFTPIRITEENDFLVWGVV 142 >gi|120596968|ref|YP_961542.1| LexA repressor [Shewanella sp. W3-18-1] gi|146294862|ref|YP_001185286.1| LexA repressor [Shewanella putrefaciens CN-32] gi|166224648|sp|A4YC04|LEXA_SHEPC RecName: Full=LexA repressor gi|166224650|sp|A1RE93|LEXA_SHESW RecName: Full=LexA repressor gi|120557061|gb|ABM22988.1| SOS-response transcriptional repressor, LexA [Shewanella sp. W3-18-1] gi|145566552|gb|ABP77487.1| SOS-response transcriptional repressor, LexA [Shewanella putrefaciens CN-32] gi|319424559|gb|ADV52633.1| transcriptional repressor, LexA family [Shewanella putrefaciens 200] Length = 206 Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 58/215 (26%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I R + P + +A + G + + E Sbjct: 1 MRPLTPRQAEILELIKRNIADTGMPPTRAEIATRLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA E G G G Sbjct: 45 EHLKALAKKGCIEIMPGTSRGIRLPAEE-----------EVVVEYGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + T D + + SM + +GD+L ++ Q G + + Sbjct: 94 AQEHVEQYYQVDPSMFHPTADFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + G + L + N Y V++S Sbjct: 153 VDDDVTVKRFEKK-GNLVYLYAENEDYSPIKVDLS 186 >gi|326802770|ref|YP_004320588.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651230|gb|AEA01413.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 194 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 33/220 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ + E LT ++ K G ++ + ++ E + ES+ K Sbjct: 1 MPTLAN-----RLKSAREAAGLTIEAVSEKIGKSVSTVWRYEQGKSE-----VNQESLTK 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + L + + + G + Sbjct: 51 LAELYGVSELYLRGFSDMKSADVIEVPVYKKYKKGKLKAAKKKHFFELASMGLPNEEI-- 108 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGD 179 + D S+ L K D +++ +V GD L +G Sbjct: 109 -----------------FAVRINDPSIQSLLSKKDYALVDPLAEVKAGDILCLADKDSGH 151 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + L L + + D E + R+ Sbjct: 152 LKLAKYQVYQDLPLYL-PLGDK--TEVRDSDDFEVLGRVF 188 >gi|298483272|ref|ZP_07001451.1| transcriptional regulator [Bacteroides sp. D22] gi|298270589|gb|EFI12171.1| transcriptional regulator [Bacteroides sp. D22] Length = 237 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 21/232 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + I R + NL S LA G+ + RN + K+ Sbjct: 1 MDTNLDVLGIIKRAKQALNLKRDSELAEYLGVSRATVTNW-----GARNSIDFRLLLDKL 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + L + E + + T Sbjct: 56 GDKVDYNWLLLGKGNPKHQPRHCESELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANL 115 Query: 122 EIRSPHNGIYAIQTQDT--------RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170 + + YA+ SM P+ + GDI+ ++S V G+ Sbjct: 116 KTLFTNKKQYALGKILIPNISVCDGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEI 175 Query: 171 LLIKPRTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L+ + K + + + L+S N + + + I +A + Sbjct: 176 YLVSFMIDGDEYLAVKYVNRSEKEGHLKLVSYNTHHEPMDIPFASINAMAIV 227 >gi|158340177|ref|YP_001521347.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina MBIC11017] gi|158310418|gb|ABW32033.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina MBIC11017] Length = 143 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 3/87 (3%) Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 K + SM GD+LI++ ++ G ++I G+ K +G+ Sbjct: 50 PAATFFMKVEGYSMTGCGIFSGDLLIVDRSLDPVDG-AVVIAVLDGEFTVKRFRRSKGQ- 107 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L + N YP TV+ ++ ++ Sbjct: 108 VLLAAENSDYPPITVQKGMDFYVWGVV 134 >gi|157960771|ref|YP_001500805.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845771|gb|ABV86270.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 182 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E + R+ + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DIGENLKRVRKEKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + S + + LL FP P Sbjct: 57 SLVDFFSIEDSTLVEQKVVYRSDELLDIGDGMLDFKLIGRDFPNRAMSVMSETYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + Q+ + Sbjct: 117 GIEMLKHEGQEAAMVIEG 134 >gi|330988947|gb|EGH87050.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 144 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 F FP + + + A + SM + GD++++ Sbjct: 19 YSFKIPAGFPNPAA-DHIEQDFSFDRLMDVRA--PHIYVAQIDGDSMKGVGIFDGDLIVV 75 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + +++ G ++ G+ V K L + I LMS N Y + + I ++ Sbjct: 76 DRSLKAGNGSIVIAAVN-GEPVCKRLCIQGENVI-LMSENSGYTPRYILEGEELMIWGVV 133 >gi|330830846|ref|YP_004393798.1| protein UmuD [Aeromonas veronii B565] gi|328805982|gb|AEB51181.1| Protein UmuD [Aeromonas veronii B565] Length = 147 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 4/89 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + SM + GD+L+++ ++ GD ++ Sbjct: 33 YLEGKLDLNTHCVPHPAATFYLRAEGESMTGVGIFPGDLLVVDKSLTPRHGDVVIALLD- 91 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 G K L + + L+ N + Sbjct: 92 GGFTVKTLQLKP--RLRLLPANPAFAPID 118 >gi|323517031|gb|ADX91412.1| DNA polymerase V component [Acinetobacter baumannii TCDC-AB0715] Length = 104 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 3/94 (3%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + + SML D LI++ ++ D ++ D K L Sbjct: 2 NEHLIKNEEATFIVRVASLSMLNAGIDIDDELIVDRSLDAKHNDIVVALID-NDFTVKRL 60 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L + N Y + I ++ Sbjct: 61 MIDENER-WLKAENPDYDDIHLHDGQELIIWGVV 93 >gi|288799785|ref|ZP_06405244.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333033|gb|EFC71512.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] Length = 230 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 54/217 (24%), Gaps = 19/217 (8%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + LT A L ++ E + ++ K N + Sbjct: 13 FIKYKGLTMKEFESLADLSTGYITSMRKSFGEQK-----LSNVLKAFPELNRDWLLYGEG 67 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 +TE Y S + + +Y + Sbjct: 68 EMLKSTSTEDNNASFVAPYIKDELIYLPLFSVPALASFA-DNLSQASATLETYPVYVAKG 126 Query: 136 QDT------RHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAKVL 185 + + + SM P + +++ ++++ K + Sbjct: 127 EAYTKERHIVIEAKGESMSPTIQNKAMILCEKIEPEQWDYIQNEKIIAIIYDNSFTIKRV 186 Query: 186 ISR---RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + +I L + N Y V DI+ I R + Sbjct: 187 LRNNLATANTITLSADNTKYGTLEVSRCDIKGIYRAI 223 >gi|237747874|ref|ZP_04578354.1| impA [Oxalobacter formigenes OXCC13] gi|229379236|gb|EEO29327.1| impA [Oxalobacter formigenes OXCC13] Length = 140 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 3/94 (3%) Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + SM + +GD ++++ +I +L + + + L R Sbjct: 44 LLVNPCSSFLFRMKGDSMEGIGIYEGDTIVVDRSIDPQHNHIVLGVADQ-EYLVRRLYKR 102 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 GR++ LM N Y + I ++ AS Sbjct: 103 -GRTVRLMPENEKYRPLELTEGRELQIWGVVTAS 135 >gi|240142321|ref|YP_002966831.1| component of DNA polymerase V, subunit D [Methylobacterium extorquens AM1] gi|240012265|gb|ACS43490.1| component of DNA polymerase V, subunit D [Methylobacterium extorquens AM1] Length = 144 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 9/133 (6%) Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI------RSPHNGIYAIQTQDTRHKTQDTSM 147 S G G P + + + SM Sbjct: 1 MLQISRPWGAPVPLPLLAGAVRAGFPSPAEDFIEQEIDLQRLLVPNRPSTFLVRVSGDSM 60 Query: 148 -LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 L GDI +++ ++ + GD +++ G+ K+ R + L N +P Sbjct: 61 VLARLFDGDIAVVDRSLTPSDGDIVVVDID-GERSFKIWSRR-AGRVQLSFANPRFPEFE 118 Query: 207 VEMSDIEWIARIL 219 ++ + I I+ Sbjct: 119 IQADAVVEIWGIV 131 >gi|323142841|ref|ZP_08077553.1| peptidase S24-like protein [Succinatimonas hippei YIT 12066] gi|322417383|gb|EFY08005.1| peptidase S24-like protein [Succinatimonas hippei YIT 12066] Length = 144 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 11/102 (10%), Positives = 34/102 (33%), Gaps = 5/102 (4%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + ++ + SM+ GD++++++ + D ++ Sbjct: 39 IDRRLDVNSYLLDHPKATIAFTVSGESMIDAGILPGDLVLVDTMKEACDKDVVVASVD-N 97 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + K L + L+ N Y E +++ + ++ Sbjct: 98 EYTIKELRIGPP--LQLLPKNKEYSPIKFEDGMEVKILGPVV 137 >gi|218886771|ref|YP_002436092.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757725|gb|ACL08624.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 244 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 30/230 (13%) Query: 17 AERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET---ICQ 71 + PS LA +A ++ S ++ R + S ES+ K+L A + Sbjct: 13 RASQGMFRNPSHLAAEAHVEQASVSRYLRNE-----KGLSLESVGKLLDAIGARLVFPDE 67 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPHN 128 L + L G + + H Sbjct: 68 QLPSREVCWVDAKVVAAGNGLPSPEHEDYYAVPLVDEAGAGPGIIPQGQLISWFLVWRHQ 127 Query: 129 GIYAIQTQDTRHKTQ--DTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKV 184 + + SM P GDI++++ + G +L+ G K Sbjct: 128 ETIRHRADLIAVRIAKGSDSMAPTLAPGDIVLVDRQDKNADRPGRIMLVMDPDGAGKVKR 187 Query: 185 LI-----SRRGRSIDLMSLN-CCYPVDTVEMSD-------IEWIARILWA 221 + + + S N YP + + + R++WA Sbjct: 188 VHAQHLPEEKDYRLTYYSDNAAAYPPEVYSLKRDFDSDWHRAIVGRVIWA 237 >gi|302877876|ref|YP_003846440.1| LexA repressor [Gallionella capsiferriformans ES-2] gi|302580665|gb|ADL54676.1| LexA repressor [Gallionella capsiferriformans ES-2] Length = 197 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 46/183 (25%), Gaps = 14/183 (7%) Query: 41 SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + W S S ++ + + + E+ + P Sbjct: 11 YLNKLQDYYADWKSIPSYARLCEIFGIASKSWVKTILTRLGEADFIERTPDGAWIPT--- 67 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPL-YRK 153 F + + V + + ++ T + SM+ Sbjct: 68 -RQFFARPLAESTVQAGMPVSVTATQGDFFVIDEMLIDTPSKTTLITVKGDSMIDAGIHD 126 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 GD+ ++ + N GD ++ D K L + L N + +E Sbjct: 127 GDVAVVEKRMTANIGDIVVAIVD-DDFTLKTLDR-ENGAFILRPANPAF-PIIRPQGTLE 183 Query: 214 WIA 216 Sbjct: 184 IFG 186 >gi|307128309|ref|YP_003880340.1| cI repressor [Streptococcus pneumoniae 670-6B] gi|306485371|gb|ADM92240.1| cI repressor [Streptococcus pneumoniae 670-6B] gi|321157300|emb|CBW39283.1| Putative phage repressor protein [Streptococcus phage 2167] Length = 255 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 31/256 (12%), Positives = 60/256 (23%), Gaps = 44/256 (17%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----------- 49 M + + + E+ + + L L T+ + R Sbjct: 1 MKVENKEIFANNLSFYMEQKGVDRNTLCADLDLKYTTVRDWLKGITYPRIGKIELLANYF 60 Query: 50 -------------NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 PS + +I + + + ++ Sbjct: 61 NINKSDLIENKIFTAQPSDSLLEEITNTARKLNTDNKKIVLRTSEELLESQENEEETKIN 120 Query: 97 PSGSGGFFDSGV-----------FPTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 G+ + S + Sbjct: 121 EVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYDAIA-YVVG 179 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P + GD L + + QV+ + + G K L + L SLN Y Sbjct: 180 NSMEPKIKNGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDYED 233 Query: 205 DTVEMS-DIEWIARIL 219 ++ S DI I ++ Sbjct: 234 IHLDESNDIRTIGEVV 249 >gi|309798706|ref|ZP_07692971.1| phage transcriptional repressor [Streptococcus infantis SK1302] gi|308117649|gb|EFO55060.1| phage transcriptional repressor [Streptococcus infantis SK1302] Length = 148 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 3/86 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 D SM P Y+ G + ++ G + K + + Sbjct: 57 AHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYIKRVYR-EAEGLR 114 Query: 195 LMSLNCCYPVDTVE-MSDIEWIARIL 219 L+S+N Y + D + I+ Sbjct: 115 LVSINPKYKDIFISYEEDPRIVGIIV 140 >gi|4063729|gb|AAC98440.1| UmuD MucA homolog [Streptococcus pneumoniae] Length = 224 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 46/181 (25%), Gaps = 15/181 (8%) Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 P+ ++ K+ N + E+ + ++ V Sbjct: 38 NPNQNNLSKLSEILNVDPRYFESEYEIVQTYLKLTERNQEATLHYATELLNKQNAKVVEI 97 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILIL 159 ++ ++ + Y D SM P Y G + ++ Sbjct: 98 PERFAYKVYEKLSAGTGTAYFDDGNYDTVYFNHQFDYDFASWVFGNSMEPTYEDGSVALI 157 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARI 218 G + G K + + L+SLN Y + I +I Sbjct: 158 KQTGFDYDG-AIYAIDWDGQTYIKKVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKI 215 Query: 219 L 219 + Sbjct: 216 V 216 >gi|222149508|ref|YP_002550465.1| bacteriophage repressor protein C1 [Agrobacterium vitis S4] gi|221736490|gb|ACM37453.1| bacteriophage repressor protein C1 [Agrobacterium vitis S4] Length = 191 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 67/225 (29%), Gaps = 41/225 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIF 59 MT I I ++ LA G+ ++ N+ K EG +R E Sbjct: 1 MTM----DIATYIAQLLSMKKWNQVKLAAHFGVSQSTVNRWKSGSEPEGHHRDAIRE--- 53 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 G K K + L+ +G + + V Sbjct: 54 --------------LYNTEFGTPDSKPFKRVKLMGKVGAGQEIYAIDD-----GGQSDVD 94 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRT 177 P + SM P Y +G IL + + + R +++ Sbjct: 95 APADAHQ---------NTVAVEVSGESMYPAYEEGTILFYSKTLPPSEMVNRRAVVQLAD 145 Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 G I K + + L S+N YP ++ +EW A I W Sbjct: 146 GRIFVKTVRPGTTPNTWTLTSINALYPDMIDQI--VEWAAPIDWI 188 >gi|162134177|gb|ABX82519.1| UmuC [Acinetobacter radioresistens] gi|162134180|gb|ABX82521.1| UmuD [Acinetobacter genomosp. 14TU] Length = 179 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 5/104 (4%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + + K SML D LI++ +I GD ++ Sbjct: 69 VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 127 Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + K L + L + N + ++ I ++ Sbjct: 128 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVIWGVV 171 >gi|262375862|ref|ZP_06069094.1| LexA repressor [Acinetobacter lwoffii SH145] gi|262309465|gb|EEY90596.1| LexA repressor [Acinetobacter lwoffii SH145] Length = 168 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + K SM D LI++ +++ D ++ + Sbjct: 63 LDMNEHLIKNEAATFIVKVASLSMRDAGIDIDDELIVDRSMEAKHEDIVIALID-NEFTV 121 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ L + N Y ++ I ++ Sbjct: 122 KRLMIEGDER-WLKAENPDYSDIHLKDGQEMVIWGVV 157 >gi|296137339|ref|YP_003644581.1| Peptidase S24/S26A/S26B, conserved region [Thiomonas intermedia K12] gi|295797461|gb|ADG32251.1| Peptidase S24/S26A/S26B, conserved region [Thiomonas intermedia K12] Length = 165 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 11/125 (8%) Query: 109 FPTGNKWNTVGVP--------EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 P G +G P + + + ++ SM+ GD+LI+ Sbjct: 30 LPMGAARVAMGFPSPAEDFEDDSVDLNQLLVRNPPATFLYRATGWSMIQAGICDGDVLIM 89 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218 + +++ GD ++ V KVL I+L S N + ++E A + Sbjct: 90 DRSVRPQDGDVVIAVWDGNAPVCKVLH-VFDDRIELHSRNPRIAPIVLSPDTEVEIFAVV 148 Query: 219 LWASQ 223 A Q Sbjct: 149 GVARQ 153 >gi|296270862|ref|YP_003653494.1| putative phage repressor [Thermobispora bispora DSM 43833] gi|296093649|gb|ADG89601.1| putative phage repressor [Thermobispora bispora DSM 43833] Length = 107 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%) Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SMLP R GD L++ + GD ++ + R ++ K L Sbjct: 2 LIAVRVAGESMLPALRPGDCLLVRRGAPIRPGDLVVAR-RPHGLIVKRAFRLMPEGWWLE 60 Query: 197 SLNCCYPVDTVEMS-----DIEWIARIL 219 S N P + E + R++ Sbjct: 61 SDNQSAPGRQDSWDFGAVPEREIVGRVI 88 >gi|218246999|ref|YP_002372370.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC 8801] gi|257060074|ref|YP_003137962.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC 8802] gi|218167477|gb|ACK66214.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC 8801] gi|256590240|gb|ACV01127.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC 8802] Length = 200 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 5/87 (5%) Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRR 189 Q + SM +GD+ I+ + + GD + K + Sbjct: 106 QKNCYALRVTGDSMIEDYIAEGDVAIMRTLSGDERPKEGDIVAAIVAGLGTTLKRFY-QE 164 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G + L + N Y V + Sbjct: 165 GEMVILQASNARYQPIRVSADQVTIQG 191 >gi|213052515|ref|ZP_03345393.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418856|ref|ZP_03351922.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426679|ref|ZP_03359429.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586424|ref|ZP_03368250.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620597|ref|ZP_03373380.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647572|ref|ZP_03377625.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855468|ref|ZP_03383708.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 117 Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 4/114 (3%) Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 P+ P + + F T E + + + SM + Sbjct: 6 PIASIPEALTIPLFTERCAAGFPSPATDYTEEELDLNAYCIRRPSSTFFVRAIGDSMRDM 65 Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203 GD+++++ A + GD ++ G+ K L + I L+ +N Y Sbjct: 66 GLHSGDLMVVDKAEKPLQGDIVI-AETEGEFTVKRLQLKP--RIALLPMNPAYH 116 >gi|84394325|ref|ZP_00993048.1| LexA repressor [Vibrio splendidus 12B01] gi|84375055|gb|EAP91979.1| LexA repressor [Vibrio splendidus 12B01] Length = 206 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIEDFGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KEAIEIIPGASRGIRILLEDAANEEQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E+ + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVEMHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G ++ L + N + V++ Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIHVDLE 186 >gi|189463056|ref|ZP_03011841.1| hypothetical protein BACCOP_03758 [Bacteroides coprocola DSM 17136] gi|198276546|ref|ZP_03209077.1| hypothetical protein BACPLE_02741 [Bacteroides plebeius DSM 17135] gi|255691241|ref|ZP_05414916.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] gi|189430338|gb|EDU99322.1| hypothetical protein BACCOP_03758 [Bacteroides coprocola DSM 17136] gi|198270634|gb|EDY94904.1| hypothetical protein BACPLE_02741 [Bacteroides plebeius DSM 17135] gi|260623156|gb|EEX46027.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] Length = 227 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 59/222 (26%), Gaps = 12/222 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I +A +T + R G +++ G + + +W S +T Sbjct: 3 NILSRIQEIASNEGITIGAMERTIGASKGVLSRAINNGTDIQAKWLSIIVENYPRYSTGW 62 Query: 68 TICQLLDL-PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + E + ++ V ++ P Sbjct: 63 LLTGAGSMLKDDLNGIKTIDEANPSFMPTTSMNPSVGTPYYDVDFIGGFDEVFNSQVNIP 122 Query: 127 HNGIYAI--QTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGDIVA 182 I + SM P GDI+ L + G+ + T Sbjct: 123 ATNIVIRGFEKASLWCNVTGHSMEPKINHGDIIALRQCTLNDIQYGEIYAVVLDTI-RTI 181 Query: 183 KVLISRRG-RSIDLMSLN-CCYPVDTVEMSDI----EWIARI 218 K+L + + +N Y + S I E I I Sbjct: 182 KILRRSPDPSKLRFIPINTEDYDEQEFDKSRIMNVFEVIGSI 223 >gi|256371471|ref|YP_003109295.1| SOS-response transcriptional repressor, LexA [Acidimicrobium ferrooxidans DSM 10331] gi|256008055|gb|ACU53622.1| SOS-response transcriptional repressor, LexA [Acidimicrobium ferrooxidans DSM 10331] Length = 207 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 43/222 (19%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRN-RWPSTESIFK 60 + I + ++ E PS +A GL P S + +R +GR R P Sbjct: 9 REAILAYVTQVVEERGWAPSVREIADAVGLKSPASVQHHLRRLERDGRLVRSPLKARSLS 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + +P+L +G P +V V Sbjct: 69 VARR--------------------APSAAVPVLAEVGAGYHV------VPEVEVETSVAV 102 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + + SM+ + GD++++ + GD ++ Sbjct: 103 PASMAAPG--------AFALRVRGHSMVDVGILDGDLVVVAPSDVAADGDIVVASVGDDV 154 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWI-ARIL 219 K+L R G S+ L N P + ++ + R++ Sbjct: 155 GTVKIL-RRNGSSVWLEGANEDDPSLAPMPWNETCHLHGRVV 195 >gi|253998706|ref|YP_003050769.1| putative phage repressor [Methylovorus sp. SIP3-4] gi|253985385|gb|ACT50242.1| putative phage repressor [Methylovorus sp. SIP3-4] Length = 232 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 4/85 (4%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 M PL GD + ++ GD L + G I K + R S+ + Sbjct: 139 LVHVYGDGMEPLLSDGDEVFIDIRCNAFDGDALYAIRQHGRITIKRVQVRLDGSVAIKYD 198 Query: 199 NC-CYPVDTVEMS---DIEWIARIL 219 N +P++ D+E + +++ Sbjct: 199 NDGGFPIEVYSAENAKDVEVVGKVM 223 >gi|253569290|ref|ZP_04846700.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251841309|gb|EES69390.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 241 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/209 (11%), Positives = 51/209 (24%), Gaps = 21/209 (10%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA G+ + + + L + + Sbjct: 29 SELASYLGVARATLSNWCARNSIDFP------LLLNKLHHVDYNWLLTGKGSPLHDPKSF 82 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI--------QTQ 136 K + + T YA+ Sbjct: 83 DNGKIRGEVETIHNSKTTEAIDDRSVTLYDITAAANLRTLLSDKRQYALGKILIPSIPAC 142 Query: 137 DTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRRG 190 D SM P+ + GDI+ +N+ V G+ ++ + K + Sbjct: 143 DGAIFVNGDSMYPILKSGDIVGFKGINNFSNVIYGEMYIVAFHLDGDQYLTVKYVNRSEK 202 Query: 191 RSID-LMSLNCCYPVDTVEMSDIEWIARI 218 L+S N + + + I+ +A + Sbjct: 203 EGYVKLVSYNPHHEPMDLPVDTIQDMAIV 231 >gi|171779679|ref|ZP_02920635.1| hypothetical protein STRINF_01516 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281781|gb|EDT47215.1| hypothetical protein STRINF_01516 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 260 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 62/259 (23%), Gaps = 49/259 (18%) Query: 2 TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 S +K+I+ + + + + L L T+ + R E + Sbjct: 4 KSVKNKEIFSKNLAYYMNKKGIDRNTLCSDLDLKYTTVRDWLKGIT--YPRIGKIELLAN 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL--------------------------- 93 + + ++ LL Sbjct: 62 YFNVNKSDLIEDKSEKSDISSKINFDPRQAILLSNYNKLNDNRKDKLVQVSEKLLAEEDG 121 Query: 94 ----------YFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRH-K 141 + G G W + + +++ Sbjct: 122 RALDICEKRAEYETRKRVSLPVPGKVSAGTGYWQEDDYDTMVDFYEDEIPDESEYDTIAI 181 Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM P + GD L + QV+ + K G+ K L S L SLN Sbjct: 182 VVGHSMEPKIKNGDFLFIKLKNQVDLNKIGIFKVD-GENYVKKLKSD-----RLESLNKE 235 Query: 202 YPVDTVEMS-DIEWIARIL 219 Y + D+ I ++ Sbjct: 236 YDDIQLSEENDVRTIGEVV 254 >gi|72382115|ref|YP_291470.1| SOS mutagenesis protein UmuD [Prochlorococcus marinus str. NATL2A] gi|124025651|ref|YP_001014767.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. NATL1A] gi|72001965|gb|AAZ57767.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Prochlorococcus marinus str. NATL2A] gi|123960719|gb|ABM75502.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str. NATL1A] Length = 144 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 5/95 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + + + + SM D+LI++ +I N G ++ Sbjct: 30 AEDYIEL--GIDLNKYLIKNPISTFFLRVSGNSMNNAGIYNNDLLIIDRSINPNPGHIVV 87 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 G+ K LI ++ S L + YP + Sbjct: 88 ALLD-GEFTLKRLIKKQD-SYYLKADKENYPAINL 120 >gi|194336454|ref|YP_002018248.1| peptidase S24 and S26 domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308931|gb|ACF43631.1| peptidase S24 and S26 domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 150 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 4/116 (3%) Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAI-QTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163 G E+ N + + SM+ R GD+LI++ +I Sbjct: 29 DTGISAGFPSPAEDFGELVLDLNKALIKHPAATFYARAKGVSMMDAGIRDGDLLIIDKSI 88 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G + G+ K + + + LM N + + + I I+ Sbjct: 89 DPKEGSIAVCFLN-GEFTVKRISLQDDG-LYLMPANSEFKPIRISEENEFQIWGIV 142 >gi|156972616|ref|YP_001443523.1| LexA repressor [Vibrio harveyi ATCC BAA-1116] gi|269961501|ref|ZP_06175864.1| LexA repressor [Vibrio harveyi 1DA3] gi|166224655|sp|A7N0W6|LEXA_VIBHB RecName: Full=LexA repressor gi|156524210|gb|ABU69296.1| hypothetical protein VIBHAR_00268 [Vibrio harveyi ATCC BAA-1116] gi|269833730|gb|EEZ87826.1| LexA repressor [Vibrio harveyi 1DA3] Length = 206 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIEDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KQAIEIIPGASRGIRILLEDAANDDQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVESHYQVDPAMFKPKADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G ++ L + N + V++ Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIQVDL 185 >gi|66395604|ref|YP_239964.1| ORF016 [Staphylococcus phage 3A] gi|156603954|ref|YP_001429900.1| repressor [Staphylococcus phage tp310-2] gi|258455601|ref|ZP_05703558.1| repressor [Staphylococcus aureus A5937] gi|295407667|ref|ZP_06817456.1| CI-like repressor [Staphylococcus aureus A8819] gi|297246768|ref|ZP_06930583.1| CI-like repressor [Staphylococcus aureus A8796] gi|62635950|gb|AAX91061.1| ORF016 [Staphylococcus phage 3A] gi|154818040|gb|ABS87467.1| repressor [Staphylococcus phage tp310-2] gi|257862289|gb|EEV85060.1| repressor [Staphylococcus aureus A5937] gi|294967481|gb|EFG43521.1| CI-like repressor [Staphylococcus aureus A8819] gi|297176394|gb|EFH35667.1| CI-like repressor [Staphylococcus aureus A8796] Length = 228 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 58/229 (25%), Gaps = 33/229 (14%) Query: 22 LTPSGLA--------RKAGLDPTSFNKSKRFGIEGRNRWPST---------ESIFKILAA 64 +T LA L +K + E R ++ Sbjct: 1 MTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYFNVKINDLYSESNT 60 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF----------DSGVFPTGNK 114 T + + + ++ TG Sbjct: 61 TYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNKVTSIDGYKESKLVSYIACGATGAG 120 Query: 115 WNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 +I +T D SM P+ ++G + + G Sbjct: 121 IGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDSIKDGTIA 180 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 L+ G + K + I+L+SLN Y V S+I+ + +++ Sbjct: 181 LVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 227 >gi|260557538|ref|ZP_05829753.1| DNA polymerase V component [Acinetobacter baumannii ATCC 19606] gi|260409164|gb|EEX02467.1| DNA polymerase V component [Acinetobacter baumannii ATCC 19606] Length = 164 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 3/85 (3%) Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 K SML D LI++ ++ GD ++ + K L+ Sbjct: 73 STFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVIALID-NEFTVKRLMIDEKGQ-W 130 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L + N Y + I ++ Sbjct: 131 LKAENPEYKNIYLADGQELIIWGVV 155 >gi|291614655|ref|YP_003524812.1| phage repressor [Sideroxydans lithotrophicus ES-1] gi|291584767|gb|ADE12425.1| putative phage repressor [Sideroxydans lithotrophicus ES-1] Length = 130 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 + SM P + +G+IL++ V+ G ++ + + + + L Sbjct: 28 KEIVALMVLGDSMAPEFTEGEILVIEMGAPVSDGSFVVGEAN-EEFIFRQLRRGDHGGWQ 86 Query: 195 LMSLNCCYPVDTV 207 L +LN YP + Sbjct: 87 LHALNPAYPDIAI 99 >gi|182415864|ref|YP_001820930.1| LexA family transcriptional regulator [Opitutus terrae PB90-1] gi|177843078|gb|ACB77330.1| transcriptional repressor, LexA family [Opitutus terrae PB90-1] Length = 200 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 50/216 (23%), Gaps = 27/216 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + I + I + + + PS R ES Sbjct: 1 MLTEKQEAILDYIRSVQAQRGVPPS--------------------TREIQRHFGYESQNA 40 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + DG T K E+ + P T+ Sbjct: 41 AMNHLRALARKGQLHQ-VDGATWGLKVSEVQGHFELPIYGTIPAGVPSMQEQQPKETITF 99 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + SM+ + + + + GD + Sbjct: 100 DPAVFRLRR----PERLWGLEVHGDSMIDAHILDGDIAVLERREAKPGDIVAALVDETTT 155 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 K L +G+ + L N Y V +E Sbjct: 156 TLKRLAYVKGKPV-LKPENARYA-LIVPKDRLEIQG 189 >gi|262279800|ref|ZP_06057585.1| DNA polymerase V component [Acinetobacter calcoaceticus RUH2202] gi|262260151|gb|EEY78884.1| DNA polymerase V component [Acinetobacter calcoaceticus RUH2202] Length = 166 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 4/129 (3%) Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSM-LPL 150 L P S + G + + + +T K SM Sbjct: 29 LIIPTSHMLIPYALEKISAGFPSPAQDYIDKALDMNEHLIKNETATFIVKVASLSMFNAG 88 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D LI++ ++ GD ++ D K L+ L + N Y + Sbjct: 89 IDIDDELIVDRSLDAKHGDIVVALID-DDFTVKRLMIDETGQ-WLKAENPDYKNIYLADG 146 Query: 211 DIEWIARIL 219 I ++ Sbjct: 147 QELIIWGVV 155 >gi|167622932|ref|YP_001673226.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352954|gb|ABZ75567.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 182 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E + ++ + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DIGENLKKVRKEKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + + + + + LL FP P Sbjct: 57 SLVEFFSIEDTQETEQKVVYRSDELLDIGDGMLDFKLIGRDFPNRAMSVMSETYPSGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + Q+ + Sbjct: 117 GIEMLKHEGQEAAMVIEG 134 >gi|221194515|ref|ZP_03567572.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221185419|gb|EEE17809.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 70/227 (30%), Gaps = 31/227 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E ++ + N+T +AR +G+ + ++ + P ES+ K+ A + Sbjct: 5 ENLEALLVLKNVTQDEIARLSGVTAGAVTGWRKGSL------PRKESLKKLCNAFGISED 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L+ + + + + P FD+ + + +P + + Sbjct: 59 DLISDTYGLAQKYKSTLSSDEQIKIP--LIKVLFDTHGNVKEDSCILISIPAYIAQNR-- 114 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRL-LIKPRTGDI-------- 180 +D +G ++++ Q G + + ++ Sbjct: 115 ----KNLFAFIVEDDGYNLKIPQGVAVVVDPNEKQPKNGSIVAVEVLNYQELSTLWNQKS 170 Query: 181 -VAKVLISRRGRSIDLM--SLNCC----YPVDTVEMSDIEWIARILW 220 V + + + L S N + S IE + I+W Sbjct: 171 YVILRTWNEGAKHLMLSPYSHNKNLDDIIIGISDIDSTIEVLGTIIW 217 >gi|150024495|ref|YP_001295321.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC [Flavobacterium psychrophilum JIP02/86] gi|149771036|emb|CAL42503.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC [Flavobacterium psychrophilum JIP02/86] Length = 148 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 V + S + K + SM P + GDILI+ S + + ++ D Sbjct: 45 VEQKLSLDEKYISNPNNTYLIKVRGNSMYPTLQIGDILIVKSDLDLKDNKIAIVSINNSD 104 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K R+ ++ N YP +E D Sbjct: 105 YTVKRYSKRKK---TFVADNSEYPNIDIEEED 133 >gi|311107821|ref|YP_003980674.1| peptidase S24-like family protein [Achromobacter xylosoxidans A8] gi|310762510|gb|ADP17959.1| peptidase S24-like family protein [Achromobacter xylosoxidans A8] Length = 367 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%) Query: 106 SGVFPTGNKWNTVGVP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 G+ +S + A + + SM P+ R G L++ Sbjct: 225 DVRLAAGDPIENHAEEQTGMIQFRKSFLRSVGADNGKGRVVYAKGDSMEPVIRDGAALLV 284 Query: 160 NSAIQVNCGDR----LLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEM-SDIE 213 + D + G ++ K + R S N + +E + + Sbjct: 285 VPNESLTLQDIAAGGVYAINYDGKMIVKTVARERLTGQWVARSFNSLHDDIPLENGASVR 344 Query: 214 WIARILWA 221 + R++WA Sbjct: 345 VLGRVVWA 352 >gi|330982709|gb|EGH80812.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 150 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 10/145 (6%) Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNGI--YAIQTQDT 138 + PS + G V P S I Y + + Sbjct: 1 PASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISDYKAKGRAF 60 Query: 139 RHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193 + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 61 WLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED-AGRY 119 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 120 FLKPLNPAYPTLAVT-EECKLIGVI 143 >gi|284008236|emb|CBA74538.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 209 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 21/218 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I E I + L + + + ++ G + PS + + Sbjct: 1 MKKTT---INERIILRMRQLKLKHKDIVKATKASKGAVSQWVNGGNK-----PSADYVAA 52 Query: 61 ILAATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + L + K K+IPLL + + + Sbjct: 53 LAHVLKVSEKWLLEGELNDEVIPYHNKMKKIPLLSLEQAVTWSDSIMNNDH------WIE 106 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + I+ T +G LI++ +V+ G + + D Sbjct: 107 TSSNTNNSCFAVQIKGDSM---VSTTGSGISLPEGAFLIIDPKYKVSSGLIVAAHLPSSD 163 Query: 180 IVA-KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + K LI I L+S+N Y ++ D I Sbjct: 164 AIIIKKLIIDGPN-IYLVSINPNYKPIQIDTLD-YIIG 199 >gi|330447172|ref|ZP_08310822.1| lexA repressor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491363|dbj|GAA05319.1| lexA repressor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 206 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTLRQQQVFDLIKAKIDETGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L+ G G G Sbjct: 46 HLKALAR------------KEVLEIIPGASRGIRLLVTEEEPEEQGLPLIGRVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V+ G + + Sbjct: 94 AQEHVEAHYEVDPMLFKPRADFLLRVNGMSMKNIGIMDGDLLAVHKTQDVHNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G + L + N + V++ Sbjct: 153 VDDDVTVKRLDKK-GSKVLLHAENEEFSPIEVDLE 186 >gi|54302652|ref|YP_132645.1| hypothetical protein PBPRB0973 [Photobacterium profundum SS9] gi|46916076|emb|CAG22845.1| hypothetical protein PBPRB0973 [Photobacterium profundum SS9] Length = 147 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 4/98 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ + GD+L+++ A Q G ++++ + Sbjct: 43 EQLELDEYLIRNPNATFLLRASGESMIGVGIYDGDLLVVDRAEQAVAGRIVIVRI-YDEF 101 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K LI + L + N + + D E + Sbjct: 102 TCKRLIRY-NDAWWLKAENPTFKAFPIP-EDAEIFGVV 137 >gi|312233589|gb|ADQ53882.1| DNA-binding protein RDGA [Vibrio harveyi] Length = 132 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 5/94 (5%) Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 +TV VP + H I Q + SM P+ G +++++ + ++ + Sbjct: 35 ISTVPVPSYVTKHRNI----NQIVSIQVMGDSMEPMLYDGGLVVIDKSEVSIRDGKVYVF 90 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 + G + K L+ G + + S N Y +T++ Sbjct: 91 RQDGMLRVKRLVLISGG-VLIKSQNPAYNSETLQ 123 >gi|90412714|ref|ZP_01220715.1| LexA repressor [Photobacterium profundum 3TCK] gi|90326289|gb|EAS42708.1| LexA repressor [Photobacterium profundum 3TCK] Length = 205 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 64/214 (29%), Gaps = 35/214 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQEVFDLIKAKIEDSGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + I +L + G G G Sbjct: 46 HLKALARK-------------EVIEIVPGASRGIRVLLHDEAEEKGLPLIGRVAAGEPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E+ + D + SM + GD+L ++ V+ G + + Sbjct: 93 AQEHVEMHYEVDPTLFKPRADFLLRVNGMSMKDIGIMDGDLLAVHKTQDVHNGQVV-VAR 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G + L + N + V++ Sbjct: 152 VDDDVTVKRLDKQ-GSQVLLHAENEDFAPIVVDL 184 >gi|148555124|ref|YP_001262706.1| putative phage repressor [Sphingomonas wittichii RW1] gi|148500314|gb|ABQ68568.1| putative phage repressor [Sphingomonas wittichii RW1] Length = 250 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 64/253 (25%), Gaps = 39/253 (15%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + I ID++ T ++ G +R G G + I Sbjct: 1 MAKKPEDRMAILARIDQLIAERGTTEFAVSTAVGRK-DLIRDLRRKGTIGP------DGI 53 Query: 59 FKILAATNETICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + ++ L K+ ++ Sbjct: 54 RLLADYFGVSVDWLRYEEGPVSVPTTPGPPHKEAYPDFQRHYERPQDEPPTVPVWGSGLG 113 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD----------------TRHKTQDTSMLPLYRKGDIL 157 V + + + + SM P Y G+ Sbjct: 114 ATVEVDADGVLVSVETLLIFPNEAVDQLRRPFRLIGRPGIYAFYFEGDSMEPKYSPGEPA 173 Query: 158 ILNSAIQVNCGDRLLIKPRTGD--------IVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 ++ D +L++ R + ++AK L+ R ++L N V Sbjct: 174 FVDGNKPPVVMDYVLVQLRRPEGDDETIHTVLAKRLVKRTAAYVELEQFNPPMR-FKVPR 232 Query: 210 SDIEWIARILWAS 222 I + +IL +S Sbjct: 233 EQIARMHKILQSS 245 >gi|260425213|ref|ZP_05779194.1| putative phage repressor [Citreicella sp. SE45] gi|260423785|gb|EEX17034.1| putative phage repressor [Citreicella sp. SE45] Length = 228 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 40/210 (19%) Query: 21 NLTPSGLARKAG------LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 L+ + LA + +D ++ NK R S E + +I T + Sbjct: 35 GLSQAALAERLDAVVPKNVDRSTINKMTLG-----KRAISAEELLRISEITGFDVPGEAP 89 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 + + + ++ GG V P SPH Sbjct: 90 IRPTTAIAGKVGAGAQVPVFDAYPKGGGP-------------QVECPPGLSPHG------ 130 Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAI-----QVNCGDRLLIKPRTGDIVAKVLIS-R 188 + + SM P+Y GD+L G R +++ + G K + + Sbjct: 131 --VVAVEVEGDSMEPVYSAGDLLFYTRDTHDGIPDDAIGHRCIVEDQDGMGWVKQVKAGE 188 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L+SLN ++W AR+ Sbjct: 189 EPGLFHLISLNPGATNMW--NKRLKWAARV 216 >gi|254521402|ref|ZP_05133457.1| SOS-response transcriptional repressor [Stenotrophomonas sp. SKA14] gi|219718993|gb|EED37518.1| SOS-response transcriptional repressor [Stenotrophomonas sp. SKA14] Length = 160 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + H + ++ SM GDIL+++ ++ GD ++ Sbjct: 47 DAIDLHRLLVRNPAATFLYRADGWSMSGAGVSDGDILVVDRSVTPQGGDLVIAIWDGNQP 106 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 KVL ++L S N +P +E S Sbjct: 107 TCKVLQ-LFESHMELHSANPDFPPIVLEQS 135 >gi|117928571|ref|YP_873122.1| putative phage repressor [Acidothermus cellulolyticus 11B] gi|117649034|gb|ABK53136.1| putative phage repressor [Acidothermus cellulolyticus 11B] Length = 190 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 18/118 (15%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKP 175 + P + A+ + SM PL G + A +L++ Sbjct: 62 QIPEPLGWAKAPRYRAVDPFMFIARVVGRSMEPLIPDGAWCLFRRAQPGSRNNKIVLVQC 121 Query: 176 RT-------GDIVAKVLISRRGRS---------IDLMSLNCCYPVDTV-EMSDIEWIA 216 R G K S + R+ I L +N +P +DI +A Sbjct: 122 RDFTDPETGGSYTVKRYRSEKARTWDGSWRHTVIRLEPINPEFPPIVFRSGADIHVVA 179 >gi|241764024|ref|ZP_04762064.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN] gi|241366698|gb|EER61163.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN] Length = 148 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 6/120 (5%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159 G FP+ V +I + + + SM G I+ + Sbjct: 25 CGVSVRAGFPSPADDFVVERLDIM---QLLVKHPQATYFWRVRGDSMRDAGIEDGSIIAV 81 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + AI+ ++ G+ K L +R I L + N YP S + ++ Sbjct: 82 DRAIKPKHNSIVVAIVD-GECTVKYLH-QRAGRIKLRAANPTYPDIIPRDSQTIEVWGVV 139 >gi|329298544|ref|ZP_08255880.1| DNA polymerase V subunit UmuD [Plautia stali symbiont] Length = 98 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + + SM R+GD+L+++S++ D ++ G+ K L + Sbjct: 4 PSATYFVRVEGDSMRDANIREGDLLVVDSSLNARHDDIVIAAIN-GEFTVKRLQTHP--C 60 Query: 193 IDLMSLNCCYPV 204 + LM +N Y Sbjct: 61 VQLMPMNPRYQP 72 >gi|271969128|ref|YP_003343324.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512303|gb|ACZ90581.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 199 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 5/133 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ + ++ S LA G+ ++ ++ + R PS E + I A Sbjct: 13 QVGSRLKRIRTQRGISLSALAEATGISKSTLSRLETGQ-----RRPSLELLLPIAQAHQV 67 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P K P P + Sbjct: 68 PLDELVGAPEVGDPRIRSKPSVRNGRTVIPLTVHPGALQAWKSIIPAEQNRPEPVTHEGY 127 Query: 128 NGIYAIQTQDTRH 140 +Y + + Sbjct: 128 EWLYVLSGRMRLI 140 >gi|182624278|ref|ZP_02952063.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177910496|gb|EDT72869.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 223 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 17/220 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I E+ +T LA+K G+ N+ + S + K+L Sbjct: 3 RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118 I ++ +K+ + + Sbjct: 61 DINMVVTDEELQKELKAEKQVRQRKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + ++ M ++ D+ + S ++ L++ Sbjct: 121 ATASNKIDGHTA----NKVFYLRIENNDMNGYRIQENDLALCYSIKEIENNSICLVEFN- 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G V + + L+S N +T + +++ IA+ Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEVKAIAK 215 >gi|114561448|ref|YP_748961.1| LexA repressor [Shewanella frigidimarina NCIMB 400] gi|122301038|sp|Q089E2|LEXA_SHEFN RecName: Full=LexA repressor gi|114332741|gb|ABI70123.1| SOS-response transcriptional repressor, LexA [Shewanella frigidimarina NCIMB 400] Length = 204 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 59/215 (27%), Gaps = 36/215 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I + I + P + +A + G S N ++ + Sbjct: 1 MRPLTPRQAEILDLIKNNIAETGMPPTRAEIANRLGFK--SANAAEEH----------LK 48 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ K L G G G Sbjct: 49 ALAK-----------------KGFIEIMPGTSRGIRLPQEEQVETGLPLIGQVAAGEPIL 91 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + + SM + +GD+L ++ Q G + + Sbjct: 92 AQEHVEQYYQVDPNMFKPAADFLLRVRGDSMKNIGILEGDLLAVHKMQQARNGQVV-VAR 150 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K ++G I L + N Y V++S Sbjct: 151 VDDDVTVKRF-EQKGNVIYLHAENEDYNPIKVDLS 184 >gi|145642325|ref|ZP_01797888.1| transcriptional activator-regulatory protein [Haemophilus influenzae R3021] gi|145272982|gb|EDK12865.1| transcriptional activator-regulatory protein [Haemophilus influenzae 22.4-21] Length = 181 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 21/174 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + + E L+ + ++ G+ + + + G+ R P +I + Sbjct: 1 MSDLS-----TRLKTLLEEKGLSMNAFSKMVGVSQPAISDI----VSGKTRSPK--NIVE 49 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVG 119 I A + L + + G+ Sbjct: 50 IATALGVDVNWLKTGEGEPIAQGSLISSLVSTDSDEHHRFRVDYLDVQAAAGHSGIENAD 109 Query: 120 VPEIRSPHNGI---------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 PE+ + + SM+P KGDI+ Q Sbjct: 110 YPEVIQSIYFSKEGLLEIVGKSTNDGISLINVPTDSMVPTINKGDIVFCRYQSQ 163 >gi|1854946|gb|AAB48301.1| RvuZ homolog [Rattus norvegicus] Length = 79 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 3/77 (3%) Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 SM GD LI++ A++ GD ++ GD+ K L +S Sbjct: 5 HTYVVLVSGDSMTGAGIFDGDYLIVSRALEAKSGDVVVACLN-GDVFVKRLGR-CQKSYV 62 Query: 195 LMSLNCCYPVDTVEMSD 211 L S + Y V D Sbjct: 63 LQSEHPDYAPRYVLDDD 79 >gi|332883114|gb|EGK03398.1| hypothetical protein HMPREF9456_02035 [Dysgonomonas mossii DSM 22836] Length = 231 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 65/227 (28%), Gaps = 24/227 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++++ E L P+ A GL+ T + I + + ST KILA Sbjct: 9 LNKILENEKLNPNQFAESIGLERT---QPIYDIINCKVKKISTNYAKKILAVYPHYSYNW 65 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIRSPHNGI 130 L + + + + G + +PE Sbjct: 66 LTTGEGEMLKIKSEVT----PKAESDYMMVEYVDLRASAGRLGGADIDLLPETHVRLVPK 121 Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDR-----LLIKPRTGDIV 181 + SM GD +++ + D + + V Sbjct: 122 EYKNGGFLVVRVDGDSMDDGTKRSLCDGDEVLIKEKKDFHVKDLPIKKTVFVITSREGNV 181 Query: 182 AKVLISR--RGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWASQ 223 K + I S N YP +E+SD I + +++ A Q Sbjct: 182 LKQIKEINTEEGYIICHSFNPIYPDFKMELSDIYQIFIVCKVV-ARQ 227 >gi|205320764|gb|ACI02880.1| RumA [uncultured bacterium HHV216] Length = 193 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 49/179 (27%), Gaps = 3/179 (1%) Query: 42 KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 K +G R K + I ++ + + + T I L+ Sbjct: 6 KGGYRKGSGRKAIYNEPTKTMRVPESRIVEIKNFLAGNKKPTFNDVASITLINPTTFKRI 65 Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 V + + + + + K SM D L+++ Sbjct: 66 PLASEKVAAGFPSPAQDYIDKTLDMNEHLVKNEAATFVVKVASLSMRDAGIEIDDELLVD 125 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +++ D ++ D K L+ G L + N Y + I ++ Sbjct: 126 RSLEAKHEDIVIALID-NDFTVKRLM-VEGDKCWLKAENPDYDDIHLNDCQELLIWGVV 182 >gi|86148646|ref|ZP_01066927.1| LexA repressor [Vibrio sp. MED222] gi|218710904|ref|YP_002418525.1| LexA repressor [Vibrio splendidus LGP32] gi|254809110|sp|B7VM94|LEXA_VIBSL RecName: Full=LexA repressor gi|85833565|gb|EAQ51742.1| LexA repressor [Vibrio sp. MED222] gi|218323923|emb|CAV20284.1| LexA repressor [Vibrio splendidus LGP32] Length = 206 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIEDCGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KEAIEIIPGASRGIRILLEDAANEEQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E+ + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVEMHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G ++ L + N + V++ Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIHVDLE 186 >gi|153835507|ref|ZP_01988174.1| LexA repressor [Vibrio harveyi HY01] gi|148867920|gb|EDL67132.1| LexA repressor [Vibrio harveyi HY01] Length = 206 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIEDTGMPPTRAEIARELGF---------------RSANAAQE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KQAIEIIPGASRGIRILLEDAANDDQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVESHYQVDPAMFKPKADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G ++ L + N + V++ Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIQVDL 185 >gi|319762557|ref|YP_004126494.1| peptidase s24/s26a/s26b, conserved region protein [Alicycliphilus denitrificans BC] gi|330824653|ref|YP_004387956.1| peptidase S24/S26A/S26B [Alicycliphilus denitrificans K601] gi|317117118|gb|ADU99606.1| Peptidase S24/S26A/S26B, conserved region protein [Alicycliphilus denitrificans BC] gi|329310025|gb|AEB84440.1| Peptidase S24/S26A/S26B, conserved region [Alicycliphilus denitrificans K601] Length = 161 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 11/136 (8%) Query: 98 SGSGGFFDSGVFPTGNKWNTVGVP--------EIRSPHNGIYAIQTQDTRHKTQDTSMLP 149 + P G +G P + + + ++ + SM+ Sbjct: 17 GPAQIDAHVLRLPVGAVHVALGFPSPAEDFEDDRVDLNEMLVRNPPATFLYRAEGWSMIQ 76 Query: 150 L-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 GD+L+++ +++ GD ++ V KVL G ++L N + Sbjct: 77 AGICDGDVLVVDRSVRPQHGDVVIAMWDGNAPVCKVLH-VCGDHVELHGRNPAIASIVLP 135 Query: 209 MS-DIEWIARILWASQ 223 ++E A + A Q Sbjct: 136 PDTEVEIFAVVGVARQ 151 >gi|29348341|ref|NP_811844.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340245|gb|AAO78038.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 241 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/209 (11%), Positives = 51/209 (24%), Gaps = 21/209 (10%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA G+ + + + L + + Sbjct: 29 SELASYLGVARATLSNWCARNSIDFP------LLLNKLRHVDYNWLLTGKGSPLHDPKSF 82 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI--------QTQ 136 K + + T YA+ Sbjct: 83 DNGKIRGEVETIHNSKTTEAIDDRSVTLYDITAAANLRTLLSDKRQYALGKILIPSIPAC 142 Query: 137 DTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRRG 190 D SM P+ + GDI+ +N+ V G+ ++ + K + Sbjct: 143 DGAIFVNGDSMYPILKSGDIVGFKGINNFSNVIYGEMYIVAFHLDGDQYLTVKYVNRSEK 202 Query: 191 RSID-LMSLNCCYPVDTVEMSDIEWIARI 218 L+S N + + + I+ +A + Sbjct: 203 EGYVKLVSYNPHHEPMDLPVDTIQDMAIV 231 >gi|119356859|ref|YP_911503.1| SOS mutagenesis protein UmuD [Chlorobium phaeobacteroides DSM 266] gi|119354208|gb|ABL65079.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Chlorobium phaeobacteroides DSM 266] Length = 150 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + + + + + + + +SM R+GDIL+++ ++ GD + Sbjct: 40 ADDAMEL--GLDLNKALIRHPEATFYARVKGSSMVEANLREGDILVIDKSLHPKNGDIAI 97 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G+ K + S+ + LM N + + + + I+ Sbjct: 98 CFLD-GEFTVKRI-SQDKSGLSLMPANDAFKPIRITEENDFLVWGIV 142 >gi|319900303|ref|YP_004160031.1| CI repressor [Bacteroides helcogenes P 36-108] gi|319415334|gb|ADV42445.1| CI repressor [Bacteroides helcogenes P 36-108] Length = 266 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 58/223 (26%), Gaps = 20/223 (8%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + R N T S LA G+ ++ + + + + Sbjct: 39 EIVKRAKLEKNFKTDSELAAFLGISRSTLSNWIARNSIDFP-----LVLGRFGDVDYNWL 93 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-------VGVPE 122 P E + + D + + Sbjct: 94 LTGNGSPALRPAFCESPLARGEVELIHNPKTTEALDDRDVSLYDISAAANLKTLLTDKSQ 153 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTG 178 I + D SM P+ + GDI+ S + ++ R G Sbjct: 154 HILGSIRIPNVPRCDGAVYVSGDSMYPILKAGDIIGFRSIQDFASVIFGEMYIVSFQRDG 213 Query: 179 D--IVAKVL-ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 D + K + S + L+S N + + + DI + + Sbjct: 214 DEYLTVKYVNHSDAPDCLKLVSYNPHHDPMDLPLKDINAMGIV 256 >gi|118590964|ref|ZP_01548364.1| putative prophage repressor [Stappia aggregata IAM 12614] gi|118436486|gb|EAV43127.1| putative prophage repressor [Stappia aggregata IAM 12614] Length = 244 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 72/241 (29%), Gaps = 26/241 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + + + +R L+ +AR G + +S + + PS + + Sbjct: 1 MDMDEQSAVSRQLADLKDRSGLSIRAIARAMGYQNASSIQRYFSADY-MKPALPS-DFVA 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 K+L + ++ P + G G + Sbjct: 59 KLLPVL-LGKGEQPITREDILALAPDSITDLDASSAPSRAATPLEIKGQVAAGLWMESAL 117 Query: 120 VPEI----RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN----SAIQVNCGDR- 170 S + + S+ + GD ++ + +++ GD Sbjct: 118 FETDAAKKTSFAGDLRFPSENQYLLQINGESLNRIAWNGDFILCVDYLGAGLEIKSGDLA 177 Query: 171 LLIKPRTGDIVA----KVLISRRGRSIDLMSL-N-CCYPVDTV------EMSDIEWIARI 218 ++ + R G K +I R I+L N + + E +++ IA++ Sbjct: 178 VVERTRDGGHTIERTAKRIIRR-NGQIELQPESNDPRFQEPVIFNEHDEEATEVRIIAKV 236 Query: 219 L 219 L Sbjct: 237 L 237 >gi|284005775|ref|YP_003391594.1| Peptidase S24, S26A and S26B, conserved region [Spirosoma linguale DSM 74] gi|283820959|gb|ADB42795.1| Peptidase S24, S26A and S26B, conserved region [Spirosoma linguale DSM 74] Length = 178 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 4/135 (2%) Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHNGIYAIQTQD 137 ++ + + F S G E + + Sbjct: 1 MIAPDDRIPIHDIVKATVQTTFFIPFYSYYVNAGFASPAESYIERACDLNELCIDNEEAT 60 Query: 138 TRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM +GD+L+++ + + + G +++ K + + + L+ Sbjct: 61 YFVRVGSDSMSGDRIERGDVLVVDCSKEPSDGKIVVVWYNGDHA-VKRIYHVE-KMVVLL 118 Query: 197 SLNCCYPVDTVEMSD 211 S N Y V + Sbjct: 119 SSNPKYDPIYVHPGE 133 >gi|326326060|ref|YP_004250869.1| putative Lambda repressor-like, DNA-binding fused with Peptidase S24, S26A, S26B and S26C [Vibrio nigripulchritudo] gi|323669111|emb|CBJ93158.1| putative Lambda repressor-like, DNA-binding fused with Peptidase S24, S26A, S26B and S26C [Vibrio nigripulchritudo] Length = 200 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 67/223 (30%), Gaps = 33/223 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ + ++ + LT + R AG+ + K +R P E + Sbjct: 1 MNQMS--ELGKRLENLRLGQGLTQEQMGRIAGVTGVTVGKWERGDAV-----PRDEKLKA 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A + L + +++ + + + + +T+ Sbjct: 54 VAAHFRVSFEYLRVGFDQTALLSATQQEVVVIPSYR----------------SGEDTLIY 97 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGD 179 P + + +M ++ G +++++ + G Sbjct: 98 DARLLPQQRSH----HLVYLAIEGGNMGDVFPVGSRVVVDTDDLHLKEGQF-YALELNEF 152 Query: 180 IVAKVLISRRGRSIDLM-SLN-CCYPVDTVE-MSDIEWIARIL 219 + + + + L N + T M+ I I R++ Sbjct: 153 LTIRKVFYTTNG-VSLEMPGNTQHFESITFPEMNRITVIGRVV 194 >gi|319778233|ref|YP_004129146.1| Error-prone repair protein UmuD [Taylorella equigenitalis MCE9] gi|317108257|gb|ADU91003.1| Error-prone repair protein UmuD [Taylorella equigenitalis MCE9] Length = 200 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 5/99 (5%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + ++ SM+ + K DILI++ ++ D + + + Sbjct: 92 DYLDFNTYLVQNPMATIAVRSGGDSMIDVGISKDDILIIDRSVTAKHMDIV-MADIGNEY 150 Query: 181 VAKVLISRRGRSIDLMSLNCC--YPVDTV-EMSDIEWIA 216 K L S++L N Y + + + Sbjct: 151 TIKRLCILPDGSVELRPENRSGIYTPIKFRDQEQLRIVG 189 >gi|237710566|ref|ZP_04541047.1| predicted protein [Bacteroides sp. 9_1_42FAA] gi|229455288|gb|EEO61009.1| predicted protein [Bacteroides sp. 9_1_42FAA] Length = 256 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 70/227 (30%), Gaps = 42/227 (18%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTS----FNKSKRFGIEG--RNRWPSTESIFKILAA 64 + ID E+++++ + L GL + S++ + R S +I K+ Sbjct: 55 KTIDAFCEKYDVSRAWLYTGEGLFAKTPSGQIEPSEKDIRDALKNARMQSDSTISKVAPY 114 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + + Y P + F +S + +PE Sbjct: 115 LQDIL--------------------VKVKYVPMDAAASFVESLYNTAYEIDSYGVMPEEG 154 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVA 182 + Y + + SM P G ++ + ++ + Sbjct: 155 EVLDDSY------MVFQVRGDSMEPTIPDGAKILARKIEEGLWESASGVVSIVYGKTLSV 208 Query: 183 KVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIA---RILWASQ 223 K ++ + L + N + VE +I + RI+ SQ Sbjct: 209 KRILKNSLFLDNVLTLKADNPKHGQLDVERREIRGMWQALRII--SQ 253 >gi|330966814|gb|EGH67074.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 97 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 3/85 (3%) Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 K SM +++++ + + + G ++ + + K+LI + G + Sbjct: 7 HIYVAKIDGDSMEGAKIFHDSLVVVDRSRKPSSGSIVIAALN-NEPLCKILIMQ-GDHVV 64 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L S N YP + + I ++ Sbjct: 65 LKSANPAYPPRHILEGEELSIWGVV 89 >gi|196234434|ref|ZP_03133260.1| peptidase S24 and S26 domain protein [Chthoniobacter flavus Ellin428] gi|196221490|gb|EDY16034.1| peptidase S24 and S26 domain protein [Chthoniobacter flavus Ellin428] Length = 163 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 3/120 (2%) Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILN 160 G G P G T+ P + + + D + + SM+ GD +L Sbjct: 35 GLPVLGEIPAGPLAATLAEPVEIMEDENLLSWRAGDFLLRVKGDSMIGDGILPGDYALLR 94 Query: 161 SAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I + G+ + + K + + + + L + N Y V + +A + Sbjct: 95 PDIHCDQGEIAAVHARDDYEGTLKHVFVEKDQ-VRLKASNPEYDDIIVSSHEWRGVAGVF 153 >gi|328725290|ref|XP_003248415.1| PREDICTED: protein umuD-like [Acyrthosiphon pisum] Length = 140 Score = 59.8 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174 + V + ++ + K SM GD+LI++SA++ GD ++ Sbjct: 32 DYVE--QRIDLNDLCVTHPSATYFIKVSGDSMIEGGISDGDMLIVDSAVEPEQGDVVVAA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+ K L+ + + L +N + + + + E + Sbjct: 90 I-AGEFTVKQLMLKP--CLHLKPMNAAHAIIPIPDPDQFEIFGVV 131 >gi|260888841|ref|ZP_05900104.1| repressor protein CI [Selenomonas sputigena ATCC 35185] gi|260861424|gb|EEX75924.1| repressor protein CI [Selenomonas sputigena ATCC 35185] Length = 73 Score = 59.8 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 +++++ V GD + + + K LI G+ L LN YP+ Sbjct: 1 MLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSV 58 Query: 215 IARILWASQ 223 + +++ ASQ Sbjct: 59 VGKVV-ASQ 66 >gi|255035795|ref|YP_003086416.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254948551|gb|ACT93251.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 273 Score = 59.8 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 27/223 (12%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET--- 68 I + R L+ LA K G+ N + GR P+ + + + Sbjct: 11 NIKFLRLRQKLSQEALAEKLGISRVKLNAIE----SGRTANPTVDDLINFSEYFRMSIDS 66 Query: 69 ---------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 Q L K ++ L + + + Sbjct: 67 LLKIELSKLSDQKLKDLEEGSELFMKGDQIRVLAITVDKEDKENIEYVPVQARAGYRSGY 126 Query: 120 VPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNC--GDR 170 + + T SMLP+ DI+ + V Sbjct: 127 ADPEFLATLPRFNLPTVPKNGTFRMFPTVGDSMLPVPEGADIITRYVQDWTTVKPETPCI 186 Query: 171 LLIKPRTGDIVAKVL-ISRRGRSIDLMSLNCCYPVDTVEMSDI 212 +++K V K + I++ ++ L S N Y TV + ++ Sbjct: 187 VILKGDQD-FVFKQVTINQEAGTMLLQSFNKQYFAYTVPIGEV 228 >gi|110803374|ref|YP_699815.1| LacI family transcription regulator [Clostridium perfringens SM101] gi|110683875|gb|ABG87245.1| DNA-binding protein [Clostridium perfringens SM101] Length = 223 Score = 59.8 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I E+ +T LA+K G+ N+ + S + K+L Sbjct: 3 RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118 I ++ +K+ + + Sbjct: 61 DINMVVTDEELQKELKAEKQLRQTKPADVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + K ++ M ++ D+ + S ++ L++ Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G V + + L+S N +T + +++ IA+ Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEVKAIAK 215 >gi|319943589|ref|ZP_08017871.1| LexA repressor [Lautropia mirabilis ATCC 51599] gi|319743404|gb|EFV95809.1| LexA repressor [Lautropia mirabilis ATCC 51599] Length = 216 Score = 59.8 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 61/222 (27%), Gaps = 21/222 (9%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +++ + + R + H L P+ L G + G + + Sbjct: 1 MRALTERQRQVLDFLHRHLQTHGLPPTLHELMHAFGWASPA-------GAAKHLQALAAR 53 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ I L + + + + + G G Sbjct: 54 GLIELSPGKARGIRLLQGAAPAGADAGRDEAGDD------EADTLRLPLVGRVAAGQPIL 107 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKP 175 E + D + Q SM+ GD++ + Q G ++ + Sbjct: 108 AGDRIERHLKIDRWLFSPRPDFLLRVQGDSMIDDGILDGDLVAGKATPQALHGQIVIARV 167 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIA 216 G I K L + + L+ N + D Sbjct: 168 D-GGITIKRL-WQHNGQVRLLPRNARHVPIDPSPWEDFAIEG 207 >gi|253566820|ref|ZP_04844272.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251944383|gb|EES84872.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 146 Score = 59.8 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM +GDIL+++ ++++ D + GD Sbjct: 41 IDLNKELIKHPASTFFGRVVGDSMRDEGIEEGDILVIDKSLELQDDDLAVCFID-GDFTV 99 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + ++ L+ N Y + V + + I+ Sbjct: 100 KRV-RIEPNAVWLIPANPKYSLIKVTKENEFIVWGIV 135 >gi|330938422|gb|EGH42047.1| peptidase [Pseudomonas syringae pv. pisi str. 1704B] Length = 144 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 17/148 (11%) Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIYAIQT 135 + T + + +GG + V P + +T + + Y + Sbjct: 1 MHNVEPTVQPSRFYRYPVISWVEAGG-WSEAVEPYPAGYSDTFEISD--------YKAKG 51 Query: 136 QDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRG 190 + + SM +G ++++++ I+ G ++ P + + K L+ Sbjct: 52 RAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED-A 110 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L LN YP V + + I I Sbjct: 111 GRYFLKPLNPAYPTIAVT-EECKLIGVI 137 >gi|315924489|ref|ZP_07920710.1| prophage repressor [Pseudoramibacter alactolyticus ATCC 23263] gi|315622193|gb|EFV02153.1| prophage repressor [Pseudoramibacter alactolyticus ATCC 23263] Length = 223 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 16/223 (7%) Query: 1 MTSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M++ HK I + + ++ + N T L+ + L P S ++ R + P +++ Sbjct: 1 MSNSIHKSIFGQRLKQLMKNFNETTYSLSEQFNLSPPSISRYTRGEM-----APKMTTVY 55 Query: 60 KILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + L+ S + + +D +F + + Sbjct: 56 ALADYFDVNPEWLMGKTVSMYESEILGDTHAAGHAFDISVFDEIRYDRPIFSNHKTADHL 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P + G ++ D +M P Y GD++++ ++ G + + Sbjct: 116 SIPIDKLTEWGP------VFGYRIPDNAMQPAYTAGDLVVIRLNTELTSGATVALHVNKE 169 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219 ++ + +I + I N V + ++ I I+ Sbjct: 170 PMIIRKIILMGNKLIT-QPFNADADAAVYDIRKHHVQTIGTIV 211 >gi|78033458|emb|CAJ30074.1| putative phage-related transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] gi|144900669|emb|CAM77533.1| Peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense MSR-1] gi|144901118|emb|CAM77982.1| phage-related transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 186 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 7/171 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + +T +A AG++ + R GR+ PS E + I A N Sbjct: 7 DRLRARSRQLGMTAGRVAELAGVNRSFVYDIMR----GRSENPSLEKLDLISEALNVERN 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSP-HN 128 LL + E + + S G ++ RS + Sbjct: 63 WLLHGIGGVDGESPIMEDPMGVFVSISSVQVSASMGGGNLVSDEVENGEPYHFQRSWILH 122 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTG 178 + A + SM+P GD+++++ + + ++ G Sbjct: 123 DLKADPNNLRIMHVEGDSMMPTLHSGDVVLVDLSKRLPTPPGIFVLFDGIG 173 >gi|53713153|ref|YP_099145.1| SOS-response transcriptional repressor UmuD-like protein [Bacteroides fragilis YCH46] gi|52216018|dbj|BAD48611.1| error-prone repair: SOS-response transcriptional repressor UmuD homolog [Bacteroides fragilis YCH46] gi|301162875|emb|CBW22422.1| putative UmuD/RumA DNA repair protein [Bacteroides fragilis 638R] Length = 147 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM +GDIL+++ ++++ D + GD Sbjct: 42 IDLNKELIKHPASTFFGRVVGDSMRDEGIEEGDILVIDKSLELQDDDLAVCFID-GDFTV 100 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + ++ L+ N Y + V + + I+ Sbjct: 101 KRV-RIEPNAVWLIPANPKYSLIKVTKENEFIVWGIV 136 >gi|302876666|ref|YP_003845299.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307687341|ref|ZP_07629787.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302579523|gb|ADL53535.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 231 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 19/205 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + L+ LA+K G N + + + K L Sbjct: 3 RVGERLKETRIKQGLSQKQLAKKIGAAENFINDIELGRKV--IPEAIIDKLSKALGENLN 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + D ++ +K P P + D+ +P Sbjct: 61 DMTMYNDEAEEKASEAKRPQKSYPNFSSPKAKKEEAPDAAWSSA-FGSILRSIPVFDYNM 119 Query: 128 NGIYA--------------IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 N A Q + + +D ML KGD+ + ++ +L Sbjct: 120 NKPLATKEFPIKANKINGYSQDKVFMLQIEDDEMLGYRIAKGDLAFCHVENEIQNN-KLY 178 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMS 197 G+ + + + I L+S Sbjct: 179 FVEYKGERMVRQVKKLDNTKILLIS 203 >gi|320539971|ref|ZP_08039629.1| putative DNA polymerase V, subunit D [Serratia symbiotica str. Tucson] gi|320029959|gb|EFW11980.1| putative DNA polymerase V, subunit D [Serratia symbiotica str. Tucson] Length = 163 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 7/106 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + + SM GD+L++ GD ++ Sbjct: 56 DYLEQRLSLDDICIRF--PESTYLVRADGHSMRDAGILDGDLLVIECCYPARHGDIVI-A 112 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE-WIARIL 219 G K L L+ N + V+ D+E I ++ Sbjct: 113 TVDGAFTCKCLQLHP--RPLLLPANPAFAPIEVDNEDMETVIFGVV 156 >gi|168209805|ref|ZP_02635430.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170712069|gb|EDT24251.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] Length = 223 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I E+ +T LA+K G+ N+ + S + K+L Sbjct: 3 RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118 I ++ +K+ + + Sbjct: 61 DINMVVTDEELQKELKAEKQVRQRKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + K ++ M ++ D+ + S ++ L++ Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G V + + L+S N +T + +++ IA+ Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEVKAIAK 215 >gi|114777903|ref|ZP_01452817.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1] gi|114551690|gb|EAU54242.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1] Length = 190 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 7/168 (4%) Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 PS I ++ + + + +D G + + + F + Sbjct: 23 PSYADIAALVGVSKQGAVKFVDRMVFAGYLQKAPGGRVGPANMFFARPHVGQAPAGFASP 82 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171 V I + + SM+ GD L++ + G + Sbjct: 83 ATEALGDVITI---DEYLVEHPSSTVLVAVSGDSMIGAGIHDGDFLVVERKQNPSIGKIV 139 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + GD K L R L N YP ++ ++ Sbjct: 140 VAIVD-GDFTIKYL-RGDSRGPYLEPANADYPCI-YPEQSLDIYGEVV 184 >gi|291614758|ref|YP_003524915.1| LexA repressor [Sideroxydans lithotrophicus ES-1] gi|291584870|gb|ADE12528.1| LexA repressor [Sideroxydans lithotrophicus ES-1] Length = 198 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 6/171 (3%) Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-FFDSGVFP 110 W S S + + E+ ++ P Sbjct: 24 WKSIPSYAALCDVFGIASKSWVKAILDRLEKAGFVERTPDGMWIPSRQFFARPLAEATVQ 83 Query: 111 TGNKWNTVGVPEIRSPHNGIYAI-QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168 G + + + T + SM+ +GD+ ++ N G Sbjct: 84 AGMPVAVNETHGEYFVIDEMLVDKPSTTTMITVKGDSMIDAGIHEGDVAVVEKRHVANIG 143 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D ++ + K L RG+ I L N YPV +E ++ Sbjct: 144 DIVVAIVD-NEFTLKTLDKERGQYI-LRPANPAYPVIR-PQGTLEIFGVLV 191 >gi|120602096|ref|YP_966496.1| peptidase S24, S26A and S26B [Desulfovibrio vulgaris DP4] gi|120562325|gb|ABM28069.1| peptidase S24, S26A and S26B [Desulfovibrio vulgaris DP4] Length = 257 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 64/233 (27%), Gaps = 25/233 (10%) Query: 4 FSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 H+ + I RM E S +AR + + N+ R P E++ ++ Sbjct: 24 LEHE-LLAGIKRMCEEQWRG-NVSSMARDLRMPQATLNQFLNGV-----RKPGYETLTRM 76 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L A I + + + + ++ Sbjct: 77 LDALGIKIVWPGQGEQTTRPVQICAGDIPEDVARS-YRAIPVVTERDALNKSAPSSPEAW 135 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRT 177 + + +T + SM PL GD +I++ A V G+ L+ Sbjct: 136 AMVWKTHPAILQRTNLVCVRVSQDSMAPLLHVGDYVIIDRADCVVTEQGHGNIFLVNDPQ 195 Query: 178 GDIVAKVLISR---RGRSIDLMSLNCCYPV--DTVEMSDIEWI------ARIL 219 K + + N P + D ++ R++ Sbjct: 196 DGPTIKRARIQSTPTSTVLFCYCDNVRIPPSFIQIPQDDDNYLSHGVLGGRVV 248 >gi|261493123|ref|ZP_05989659.1| hypothetical protein COK_1537 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496454|ref|ZP_05992837.1| hypothetical protein COI_2175 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307887|gb|EEY09207.1| hypothetical protein COI_2175 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311211|gb|EEY12378.1| hypothetical protein COK_1537 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 219 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 14/210 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R + ++ + A + G+ + +R P+ + I K+L L Sbjct: 9 VKRRIKELDIHRTVFAERVGVSSSGLGSWLN-----ESRVPNLDQIAKMLYLVGIDSVTL 63 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 K +I + S + GF + G T + A Sbjct: 64 HSADCLMSVRESYKLNKIEGVPVKGSLAFGFPEMGNAVEKATLKTAEQKQFIDFR----A 119 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLI---SR 188 + ++ T++ P R+ + ++++ + D + + T + K L+ + Sbjct: 120 SSPRSEAYQILGTALSPRIRRNEFVVIDPNKKPLETDEVLVYFKETEEYAIKRLVELAKK 179 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G + L LN VE I + RI Sbjct: 180 EGDPVFLADLNQDMLRMAVEEDAIT-MYRI 208 >gi|184159083|ref|YP_001847422.1| hypothetical protein ACICU_02763 [Acinetobacter baumannii ACICU] gi|332875911|ref|ZP_08443697.1| peptidase S24-like protein [Acinetobacter baumannii 6014059] gi|183210677|gb|ACC58075.1| hypothetical protein ACICU_02763 [Acinetobacter baumannii ACICU] gi|332735777|gb|EGJ66818.1| peptidase S24-like protein [Acinetobacter baumannii 6014059] Length = 258 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 65/244 (26%), Gaps = 39/244 (15%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAATN-- 66 + ++ E+++ T A + + + G G+ +I N Sbjct: 9 ANLIKLLEKYS-TQKEFAELVDTPTSYITQITQGTLGKNGKPVSLGNTVARRIEKMLNLE 67 Query: 67 -----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---------- 111 + K ++ + S ++ P Sbjct: 68 HGFMDVDHSTDHNNIVPFNPQVNPKSDDLRISPVEFKSSFENKNTIKIPVHKNVRASCGD 127 Query: 112 ------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + + + V GI + + + SM P L +++ Sbjct: 128 GVANFLEDVTDYLEVDPNFLRLMGINIKPERLRIIYSTEYSMWPTVVPDSPLFVDTTPVD 187 Query: 166 ----NCGDRLLIKPRTGDIVAKVLISRRGR--SIDLMSLNCC---YPVDTVEMS---DIE 213 GD + + + K + G ++ L S N YP + + ++ Sbjct: 188 TSAMISGD-VYVFMHNSLLRMKRVFISYGDEKTVRLQSDNPDKKKYPDEIITREQLNELV 246 Query: 214 WIAR 217 ++ R Sbjct: 247 FLGR 250 >gi|262392923|ref|YP_003284777.1| SOS-response repressor and protease LexA [Vibrio sp. Ex25] gi|262336517|gb|ACY50312.1| SOS-response repressor and protease LexA [Vibrio sp. Ex25] Length = 207 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 33/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + I L + G G G Sbjct: 46 HLKALARK-----------QAIEIIPGASRGIRILLDDSAANDEQGLPLIGQVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 95 AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G +I L + N + V++ Sbjct: 154 VDDDVTVKRLERK-GSTILLHAENEEFAPIQVDL 186 >gi|18311546|ref|NP_563480.1| hypothetical protein CPE2564 [Clostridium perfringens str. 13] gi|18146230|dbj|BAB82270.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 223 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I E+ +T LA+K G+ N+ + S + K+L Sbjct: 3 RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118 I ++ +K+ + + Sbjct: 61 DINMVVTDEELQKELKAEKQVRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + K ++ M ++ D+ + S ++ L++ Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G V + + L+S N +T + +I+ IA+ Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEIKAIAK 215 >gi|330902832|gb|EGH33834.1| repressor protein c2 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 140 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 17/142 (11%) Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139 + P++ + +G +P G +T + + Y + + Sbjct: 2 HTVQPSRFYRYPVISWVEAGGWSEAVE-PYPAGY-SDTFEISD--------YKAKGRAFW 51 Query: 140 HKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSID 194 + SM +G ++++++ V G ++ P + + K L+ G Sbjct: 52 LVVRGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKLPASNEATFKKLVEDGGTRY- 110 Query: 195 LMSLNCCYPVDTVEMSDIEWIA 216 L LN Y + D I Sbjct: 111 LKPLNPAYKMIECGA-DCRIIG 131 >gi|89075957|ref|ZP_01162329.1| umuD protein [Photobacterium sp. SKA34] gi|89048306|gb|EAR53885.1| umuD protein [Photobacterium sp. SKA34] Length = 242 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 10/162 (6%) Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + +L + K+ ++ ++ F + P + + + Sbjct: 82 VFEQHGSNHIARWNLLCQHIAASGKEWDDLHVIGVITLSIHHFRQPPLLPWHHDLTELDL 141 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 H + + + SMLP DIL+L + D ++ D+ Sbjct: 142 ------HQLVITQEHSTILCRAAGLSMLPYIWDHDILVLERHLNPENEDVIV-LSLNNDL 194 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 V K + L S N + + D + ++ S Sbjct: 195 VVKRVNLHSR---TLYSDNPSFQPHQINPDDYTRLHGVVRYS 233 >gi|157374197|ref|YP_001472797.1| XRE family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157316571|gb|ABV35669.1| transcriptional regulator, XRE family [Shewanella sediminis HAW-EB3] Length = 184 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 6/140 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 HLDIGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIR 124 ++ + S G + + LL +P P Sbjct: 57 PMSLVDFFSMEDSGGSEQKVVYRSDELLDIGDGNLDYKLVGRDYPNRAMSVMSETYPPGS 116 Query: 125 SPHNGIYAIQTQDTRHKTQD 144 + + ++ + Sbjct: 117 DTGEEMLKHEGEEAAMVIEG 136 >gi|110834444|ref|YP_693303.1| LexA repressor [Alcanivorax borkumensis SK2] gi|110647555|emb|CAL17031.1| LexA repressor [Alcanivorax borkumensis SK2] Length = 163 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 4/101 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + E + + + SM+ GDILI++ +++ GD ++ Sbjct: 49 YLDEHLDLNRLCIRHPASTFLLRVEGDSMVDAGIYSGDILIVDRSLEAVAGDVVV-ASLE 107 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K L L N Y + ++ + Sbjct: 108 GEFTVKELQLLPVP--MLKPRNAAYAPILIGEEGLDLFGVV 146 >gi|168205827|ref|ZP_02631832.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168213491|ref|ZP_02639116.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|169343302|ref|ZP_02864312.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169298600|gb|EDS80681.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170662662|gb|EDT15345.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170715060|gb|EDT27242.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 223 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I E+ +T LA+K G+ N+ + S + K+L Sbjct: 3 RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118 I ++ +K+ + + Sbjct: 61 DINMVVTDEELQKELKAEKQVRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + K ++ M ++ D+ + S ++ L++ Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G V + + L+S N +T + +++ IA+ Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEVKSIAK 215 >gi|224538220|ref|ZP_03678759.1| hypothetical protein BACCELL_03111 [Bacteroides cellulosilyticus DSM 14838] gi|224520152|gb|EEF89257.1| hypothetical protein BACCELL_03111 [Bacteroides cellulosilyticus DSM 14838] Length = 255 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 57/208 (27%), Gaps = 19/208 (9%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 + LA G+ ++ + + K+ + P S ++ Sbjct: 43 ADLAAYLGVSRSTLSNWIARNSIDFP-----LLLSKMKDVDYNWLLVGKGTPMSHLQSYH 97 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-------AIQTQD 137 + + + + + + + + +I D Sbjct: 98 SELATGNVEIIHNPKTPDAMKDRSVVLYDITAAANLRTLLANKHQFVMGRIQIPSIPVCD 157 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGD---IVAKVLISRR-G 190 SM P+ + GDI+ + G+ L+ + K + Sbjct: 158 GALYISGDSMYPILKSGDIVGFKEMNSFSNVIYGEMYLVSFDIDGDEYLAVKYVNRSEQE 217 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 I L+S N + V + I+ +A + Sbjct: 218 GCIKLVSYNPHHEPMDVPFASIQAMAIV 245 >gi|238607367|ref|XP_002396959.1| hypothetical protein MPER_02697 [Moniliophthora perniciosa FA553] gi|215470480|gb|EEB97889.1| hypothetical protein MPER_02697 [Moniliophthora perniciosa FA553] Length = 81 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 1/77 (1%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVD 205 M P G + +N+ + ++ G K+L + + S N + + Sbjct: 1 MEPNIPDGTTVAVNTDDKKIVDGKIYAINEGGWKRIKILYRVGPDKVSVRSFNSEEHKDE 60 Query: 206 TVEMSDIEWIARILWAS 222 ++ IE I R+ W S Sbjct: 61 EKNLTAIEIIGRVFWWS 77 >gi|60681418|ref|YP_211562.1| putative UmuD/RumA DNA repair protein [Bacteroides fragilis NCTC 9343] gi|60492852|emb|CAH07627.1| putative UmuD/RumA DNA repair protein [Bacteroides fragilis NCTC 9343] Length = 145 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM +GDIL+++ ++++ D + GD Sbjct: 40 IDLNKELIKHPASTFFGRVVGDSMRDEGIEEGDILVIDKSLELQDDDLAVCFID-GDFTV 98 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + ++ L+ N Y + V + + I+ Sbjct: 99 KRV-RIEPNAVWLIPANPKYSLIKVTKENEFIVWGIV 134 >gi|168217329|ref|ZP_02642954.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|182380554|gb|EDT78033.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 223 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I E+ +T LA+K G+ N+ + S + K+L Sbjct: 3 RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118 I ++ +K+ + + Sbjct: 61 DINMVVTDEELQKELKAEKQVRQRKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + K ++ M ++ D+ + S ++ L++ Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G V + + L+S N +T + +I+ IA+ Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEIKAIAK 215 >gi|162134169|gb|ABX82515.1| UmuD [Acinetobacter genomosp. 3 str. DSM 21653] gi|162134175|gb|ABX82518.1| UmuD [Acinetobacter calcoaceticus subsp. anitratus] Length = 167 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 5/101 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + + K SML D LI++ +I GD ++ Sbjct: 68 DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDINDPLIVDRSIPAKSGDIVIALID- 126 Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWI 215 D K L+ + L + N Y +E I Sbjct: 127 NDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVI 167 >gi|325497801|gb|EGC95660.1| putative prophage repressor CI [Escherichia fergusonii ECD227] Length = 125 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 40/112 (35%), Gaps = 7/112 (6%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCG 168 + +I ++ + K + SM +G ++++++ + G Sbjct: 9 EACEPYDIKDIDEWYDSDVNLLGDGFWLKVEGDSMTSPVGQSIPEGHMVLVDTGREPVNG 68 Query: 169 DRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ + K L+ G+ L LN +P+ + + + I ++ Sbjct: 69 SLVVAKLTDANEATFKKLVIDGGQKY-LKGLNPSWPMTPINGN-CKIIGVVV 118 >gi|90581348|ref|ZP_01237144.1| umuD protein [Vibrio angustum S14] gi|90437458|gb|EAS62653.1| umuD protein [Vibrio angustum S14] Length = 235 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 10/162 (6%) Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + +L + K+ ++ ++ F + P + + + Sbjct: 75 VFEQHGDNHIARWNLLCQHIAASGKEWDDLHVIGVITLSIHHFRQPPLLPWHHDLTELDL 134 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 H + + + SMLP DIL+L + D ++ D+ Sbjct: 135 ------HQLVITQEHSTILCRAAGLSMLPYIWDHDILVLERHLNPENEDVIV-LSLNNDL 187 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 V K + L S N + + D + ++ S Sbjct: 188 VVKRVNLHSR---TLYSDNPSFKPQKINQDDYTRLHGVVRYS 226 >gi|257894829|ref|ZP_05674482.1| peptidase S24/S26A/S26B [Enterococcus faecium 1,231,408] gi|257831208|gb|EEV57815.1| peptidase S24/S26A/S26B [Enterococcus faecium 1,231,408] Length = 190 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 13/134 (9%) Query: 97 PSGSGGFFDSGVFPTGNKWNTV--GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 G+ G+ P D SM P + G Sbjct: 58 EDEKQEVSYVGLLSAGHGCPNYDKERPFGTVTMRESQIPSHYDLAFMVNGNSMYPTFENG 117 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--------NCCYPVDT 206 +I+ + V G ++ G+ K + R + L+SL N YP Sbjct: 118 EIVFIKQTPNVMNGQIGAVEIN-GEAFLKKMY-VENRRLRLVSLNCECDENGNRLYPDFY 175 Query: 207 VEM-SDIEWIARIL 219 + D+ I R++ Sbjct: 176 ADEYDDLYVIGRVI 189 >gi|265763248|ref|ZP_06091816.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255856|gb|EEZ27202.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 146 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + SM +GDIL+++ ++++ D + GD Sbjct: 41 IDLNKELIKHPVSTFFGRVVGDSMRDEGIEEGDILVIDKSLELQDDDLAVCFID-GDFTV 99 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K + ++ L+ N Y + V + + I+ Sbjct: 100 KRV-RIEPNAVWLIPANPKYSLIKVTKENEFIVWGIV 135 >gi|261492931|ref|ZP_05989477.1| S24 family peptidase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496719|ref|ZP_05993094.1| S24 family peptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307558|gb|EEY08886.1| S24 family peptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311472|gb|EEY12629.1| S24 family peptidase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 242 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSI 193 + SM P GD L+++ + GD + I + K + + Sbjct: 147 KKCAVFWASGDSMYPTIDNGDQLLVDLSRNEIRGDNNIYIVQNGDSVWVKRVKLLWDG-V 205 Query: 194 DLMSLN-CCYPVDTVEMSD---IEWIARIL 219 +L+S N Y + + ++ I +++ Sbjct: 206 ELISDNREEYELIKITADQAQNLQIIGQVV 235 >gi|156603892|ref|YP_001429839.1| repressor [Staphylococcus phage tp310-1] gi|154817978|gb|ABS87406.1| repressor [Staphylococcus phage tp310-1] Length = 256 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/258 (12%), Positives = 68/258 (26%), Gaps = 48/258 (18%) Query: 6 HKKIWEAIDRMAERHNLTPSGL-------ARKAGLD--PTSFNKSKRFGIEGRNRWPSTE 56 +K+ + + + NL + +K G+ ++ ++ Sbjct: 2 REKVSNRLKHIMKIRNLKQVDIINKSKPYQKKLGISLSKSTLSQYINDVQS--PDQDRIY 59 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF------- 109 + K L + + + E + + S V Sbjct: 60 LLSKTLNVGEAWLMGYDVDSYRVPDEERQDETIMSKINNIFSQLTPPRQENVLNYANEQL 119 Query: 110 ------------------------PTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKT 142 TG +I +T D Sbjct: 120 EEQNKVTSIDGYKESKLVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILV 179 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P+ ++G + + G L+ G + K + I+L+SLN Y Sbjct: 180 NGDSMEPMLKQGTYAFIKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKY 237 Query: 203 PVDTV-EMSDIEWIARIL 219 V S+I+ + +++ Sbjct: 238 DDIKVASFSNIKVMGKVV 255 >gi|260774816|ref|ZP_05883718.1| SOS-response repressor and protease LexA [Vibrio coralliilyticus ATCC BAA-450] gi|260609241|gb|EEX35396.1| SOS-response repressor and protease LexA [Vibrio coralliilyticus ATCC BAA-450] Length = 205 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 35/215 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + I +L + G G G Sbjct: 46 HLKALARK-------------QAIEIIPGASRGIRILLEDAANDDGLPLIGQVAAGEPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V+ G + + Sbjct: 93 AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVHDGQVV-VAR 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G ++ L + N + V++S Sbjct: 152 VDDDVTVKRLERK-GSTVLLHAENEEFEPIKVDLS 185 >gi|298529605|ref|ZP_07017008.1| Peptidase S24/S26A/S26B, conserved region [Desulfonatronospira thiodismutans ASO3-1] gi|298511041|gb|EFI34944.1| Peptidase S24/S26A/S26B, conserved region [Desulfonatronospira thiodismutans ASO3-1] Length = 144 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 3/102 (2%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + Q + SM GDIL+++ +++ ++ Sbjct: 37 YLDRTLDLNEYLIHNQAASFFIRVAGESMQGAGILPGDILLVDRSVEPAHNKIVVAVLD- 95 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++V K L R+GR + L+ + + + + I ++ Sbjct: 96 DEMVVKRLRYRQGRGV-LVPEHPGFRPIEITDAMEAHIWGVV 136 >gi|254361311|ref|ZP_04977453.1| S24 family peptidase [Mannheimia haemolytica PHL213] gi|153092812|gb|EDN73849.1| S24 family peptidase [Mannheimia haemolytica PHL213] Length = 242 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSI 193 + SM P GD L+++ + GD + I + K + + Sbjct: 147 KKCAVFWASGDSMYPTIDNGDQLLVDLSRNEIRGDNNIYIVQNGDSVWVKRVKLLWDG-V 205 Query: 194 DLMSLN-CCYPVDTVEMSD---IEWIARIL 219 +L+S N Y + + ++ I +++ Sbjct: 206 ELISDNREEYELIKITADQAQNLQIIGQVV 235 >gi|312137328|ref|YP_004004665.1| phage repressor [Methanothermus fervidus DSM 2088] gi|311225047|gb|ADP77903.1| putative phage repressor [Methanothermus fervidus DSM 2088] Length = 214 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 41/157 (26%) Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 S + I+ T + F + E + + +S N Sbjct: 28 SFHRLNIIIETNGTTSDIKISNFFINPPPPEMLHEISNYVSAAIYDPDSTVESIKENVKN 87 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 G ++ + SM P + G +I GD ++ Sbjct: 88 IAEKYGYKDVNVKIISQFGEDKLPMFAIVSGDSMYPTLKNGQEIIAVKTKDFKVGDIVIA 147 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K ++ K + G + L+S N + Sbjct: 148 KHPVYGLIVKRVGKIEGDMVYLVSDNKSVKKIYLPNE 184 >gi|148978333|ref|ZP_01814838.1| putative phage repressor [Vibrionales bacterium SWAT-3] gi|145962492|gb|EDK27770.1| putative phage repressor [Vibrionales bacterium SWAT-3] Length = 236 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 50/203 (24%), Gaps = 26/203 (12%) Query: 39 NKSKRFGIEGRNRWPST------ESIFKIL-AATNETICQLLDLPFSDGRTTEKKEKEIP 91 N + EG R + K+L + L + Sbjct: 30 NNWLKRKAEGNGRSMEYHLSNFGPEVRKLLIETYITDEVEKNQLLEKFENLMPSNAYGLK 89 Query: 92 LLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 L + G +P G+ + Sbjct: 90 PLSEFGEWAKLPVYDVHAAAGAGALVQSEYQIGVFSLPVELLLEYGL--KPEFSSVIFVD 147 Query: 144 DTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLN 199 SM P+ GD L+++ V G + + + K L ++S N Sbjct: 148 GDSMEPILSDGDRLLVDIRERQHPVANG--VYVIRIDEAVYVKRLQWDIENGVYKIISDN 205 Query: 200 CCYPVDTVEMS---DIEWIARIL 219 YP + + + + I + + Sbjct: 206 LKYPAFNINHNNGRNFKIIGKAV 228 >gi|294054768|ref|YP_003548426.1| transcriptional repressor, LexA family [Coraliomargarita akajimensis DSM 45221] gi|293614101|gb|ADE54256.1| transcriptional repressor, LexA family [Coraliomargarita akajimensis DSM 45221] Length = 213 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 60/222 (27%), Gaps = 24/222 (10%) Query: 1 MTSFS--HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-ST 55 M + K+I E I+ R+ + + K T + G R Sbjct: 1 MRDLTDRQKEILEFIEDHEWRNGFWPSIREIQDKFEFAST-------NAVMGHLRALEKK 53 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + +I D P + E + + G Sbjct: 54 GVLERIAGQARTFRIIRPDDPETTDVPDNASEVVEIPVMGAIAAGYPDRVESGGEIGRLQ 113 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + + + + + SM+ GD++I+ GD + Sbjct: 114 VDI--------GSAGFGNRRRSFALQVRGESMVDAEIYDGDMVIIE-QRDAQDGDIVAAL 164 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + K I + G L + N YP ++++ Sbjct: 165 ID-NETTLKRFIQKPGEPPYLKAENKFYPEL-YPVNELTVQG 204 >gi|300857320|ref|YP_003782304.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437435|gb|ADK17202.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 222 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 76/221 (34%), Gaps = 18/221 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + I ++ LA+K G+ N+++ R + I K+ Sbjct: 2 NRVGQKIKLARTEMGISQKQLAKKLGVSEKFINEAESG-----KRIVNQNIIDKLSKILG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL-----LYFPPSGSGGF----FDSGVFPTGNKWNT 117 ++I + + ++ K P+ + S + G + Sbjct: 57 KSINDITMSFEEEVYKEDRTPKSSPITKKEKVQDVWSEAFGSVLKKVPIYKYDMRTVVGF 116 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176 +P I + G Q + + + M ++GD++ ++S ++ + Sbjct: 117 RQLPLIDNKIEGY--AQDKVMYVQVESDDMEGFRIQRGDLVFVHSTGEIYNNSI-YLVEY 173 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +G + + + L+S +T+E+ ++ IA+ Sbjct: 174 SGKRELRQIKKLDSNKVLLISSRSGIRTETIEIKSLKIIAK 214 >gi|13477014|ref|NP_108584.1| repressor protein C [Mesorhizobium loti MAFF303099] gi|14027777|dbj|BAB54370.1| repressor protein C [Mesorhizobium loti MAFF303099] Length = 246 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 60/227 (26%), Gaps = 19/227 (8%) Query: 10 WEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK----ILAA 64 + + E+ + + A G+ ++F + E E + A Sbjct: 17 GDRLRAAREKAGYSSAAKAAAALGISASTFRAHENGQNEFGPVE--AERYARRFGTSAAH 74 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---P 121 ++ R + K + G G + Sbjct: 75 LLTGATATVERLPIPERESLPKPNASFPPRYEQFPQVGTIPVLGQSVGGPNGRFVLNGQE 134 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI- 180 R + + TSM P Y G+ + +N V GD ++++ D Sbjct: 135 AGRVFCPPMLENVEGAYAVRVYGTSMEPRYFAGETIWINPHEPVRSGDFVVVQVVGDDDD 194 Query: 181 -----VAKVLISRRGRSIDLMSLNCCY---PVDTVEMSDIEWIARIL 219 K +SR + L LN + + +I+ Sbjct: 195 DTRDSYIKQFMSRSNSLVRLRQLNPDEGENETLDFPTKRVFSVHKIV 241 >gi|237728500|ref|ZP_04558981.1| UV protection and mutation protein [Citrobacter sp. 30_2] gi|226909978|gb|EEH95896.1| UV protection and mutation protein [Citrobacter sp. 30_2] Length = 138 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLY 151 S G F V P + +V V E + + + + +SM Sbjct: 6 VTQQSPGQFPLFVEPVSAGFPSVASDYVDEFIDLNTHLIKHPSATYFLRVTGSSMVEARI 65 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMS 210 +GD++I++S+++ GD ++ GD K L + L+ +N + E Sbjct: 66 HEGDLVIVDSSLEAKEGDIVI-ATVDGDFTIKRLQLSPAPA--LLPMNSRMSPIYLKEGE 122 Query: 211 DIEWIARI 218 ++ + Sbjct: 123 ELAIFGVV 130 >gi|114567063|ref|YP_754217.1| XRE family transcriptional regulator [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337998|gb|ABI68846.1| putative transcriptional regulator, XRE family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 359 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 5/90 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I+++ + N++ + LA +AGL + ++ + R PS ES+ K+ +A Sbjct: 3 ISERINKLRKERNMSQALLAERAGLKAPAISQYESGA-----RSPSFESLIKLSSALGVP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 LL + +++ Sbjct: 58 SDYLLLGEEAAPYEESSDSLSRMIMHISGM 87 >gi|302342291|ref|YP_003806820.1| LexA family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638904|gb|ADK84226.1| transcriptional repressor, LexA family [Desulfarculus baarsii DSM 2075] Length = 203 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 3/127 (2%) Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + + + ++ GG G G + + Y + + Sbjct: 63 RPRALEVIGARKRAHGGIPMLGRIAAGQPIMAAEEADEFVDIDPAYFGSGAFFALRVRGE 122 Query: 146 SML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM+ GD++IL S G ++ ++ K ++L + N Sbjct: 123 SMIGDHIADGDMVILRSQTTAQPGQ-VVAAMIDDEVTLKHYHP-GADVLELRATNPAVAN 180 Query: 205 DTVEMSD 211 V D Sbjct: 181 IRVGRGD 187 >gi|159026334|emb|CAO86423.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 191 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 5/164 (3%) Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 PS + + + + Q + E + L G G Sbjct: 14 HAPSIRQMMRAMNLRSPAPIQSRLERLRAKGYIDWTEGKARTLRILKQPVQGLPVLGAIA 73 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNS---AIQVN 166 G E + + + + SM GD++I+ S V+ Sbjct: 74 AGGLVEPFTDVEEKLDLSNLLQRSQDCYALRVSGDSMIEDHIADGDLVIMRSLTGNEGVS 133 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 G+ + + K + G I L N Y T Sbjct: 134 NGEIVAARVEGHGTTLKRFY-QEGEIITLQPSNQKYQPITANTE 176 >gi|148981491|ref|ZP_01816431.1| LexA repressor [Vibrionales bacterium SWAT-3] gi|145960846|gb|EDK26178.1| LexA repressor [Vibrionales bacterium SWAT-3] Length = 206 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 62/215 (28%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++ + I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVLDLIKGKIEDSGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KEAIEIIPGASRGIRILLEDAANEEQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E+ + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVEMHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G ++ L + N + V++ Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIRVDLE 186 >gi|91227491|ref|ZP_01261828.1| LexA repressor [Vibrio alginolyticus 12G01] gi|269968655|ref|ZP_06182652.1| LexA repressor [Vibrio alginolyticus 40B] gi|91188515|gb|EAS74807.1| LexA repressor [Vibrio alginolyticus 12G01] gi|269826742|gb|EEZ81079.1| LexA repressor [Vibrio alginolyticus 40B] Length = 206 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KQAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G +I L + N + V++ Sbjct: 153 VDDDVTVKRLERK-GSTILLHAENEEFAPIQVDL 185 >gi|89076081|ref|ZP_01162441.1| LexA repressor [Photobacterium sp. SKA34] gi|89048233|gb|EAR53815.1| LexA repressor [Photobacterium sp. SKA34] Length = 206 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 60/215 (27%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTLRQQEVFDLIKAKIDETGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L+ G G G Sbjct: 46 HLKALAR------------KEVLEIIPGASRGIRLLVNQEEPEEQGLPLIGRVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V+ G + + Sbjct: 94 AQEHVEAHYEVDPMLFKPRADFLLRVNGMSMKNIGIMDGDLLAVHKTQDVHNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + + L + N + V++ Sbjct: 153 VDDDVTVKRLDKQGA-KVLLHAENEEFSPIEVDLE 186 >gi|227514054|ref|ZP_03944103.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931] gi|227087582|gb|EEI22894.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931] Length = 69 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 +++++ V GD + + + K LI G+ L LN YP+ Sbjct: 1 MLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSV 58 Query: 215 IARILWASQ 223 + +++ ASQ Sbjct: 59 VGKVI-ASQ 66 >gi|294789924|ref|ZP_06755148.1| putative transcriptional regulator [Simonsiella muelleri ATCC 29453] gi|294482148|gb|EFG29851.1| putative transcriptional regulator [Simonsiella muelleri ATCC 29453] Length = 112 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 34/87 (39%), Gaps = 1/87 (1%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 + D +MLP + +G L ++++ ++ + + S+ S+ Sbjct: 22 GSLKKIVMPDNAMLPTFPQGSELTIDTSQTAIIDGKIYQIQSGERFFIRKIFSQISGSLK 81 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL-W 220 ++ N + V ++ + R++ W Sbjct: 82 IVCDNPEFESVIVSSDSVQIVGRVIEW 108 >gi|114778581|ref|ZP_01453408.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1] gi|114551170|gb|EAU53730.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1] Length = 194 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 5/167 (2%) Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 S I + S + + ++P P S G P G Sbjct: 23 LPSYAGIAELLGMKSRASVQQLVSRLKENGYLDNKVPRRLVPTSKFLERPLVGSAPAGFP 82 Query: 115 W-NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + S + + + + SM+ GDI+I+ + ++ Sbjct: 83 SPAEEALGDAISIDDYLVEHPSATVLVQVDGDSMIGAGINSGDIMIVRRESRPRVDRIIV 142 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD K L + + L N Y +D++ ++ Sbjct: 143 AIVD-GDFTIKYL-RKDKQGYFLEPANPAY-PIIRPDNDLQMYGVVV 186 >gi|261350924|ref|ZP_05976341.1| conserved hypothetical protein [Methanobrevibacter smithii DSM 2374] gi|288860262|gb|EFC92560.1| conserved hypothetical protein [Methanobrevibacter smithii DSM 2374] Length = 204 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 ++ TSMLP + G +++N V+ GD ++ + K + I L+S Sbjct: 109 VIYQVDGTSMLPTLQDGQNVLVNKTQDVHVGDIVVANSSEYGNIIKRVDEVNNNQIHLVS 168 Query: 198 LNCC 201 N Sbjct: 169 DNKN 172 >gi|257793772|ref|ZP_05642751.1| phage repressor [Staphylococcus aureus A9781] gi|258420982|ref|ZP_05683913.1| repressor [Staphylococcus aureus A9719] gi|257787744|gb|EEV26084.1| phage repressor [Staphylococcus aureus A9781] gi|257842930|gb|EEV67348.1| repressor [Staphylococcus aureus A9719] Length = 256 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 6/119 (5%) Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNS 161 TG +I +T D SM P+ ++G + Sbjct: 139 YIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKK 198 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V S+I+ + +++ Sbjct: 199 EDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 255 >gi|224824355|ref|ZP_03697463.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002] gi|224603774|gb|EEG09949.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002] Length = 174 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 6/129 (4%) Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 + + +L FP+ + + ++ + + Sbjct: 31 PRQAFRAAEVLSETELPLYASRVPAGFPSPADD---YLEASLNLNDYLIRHPESTFFVRV 87 Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM GD+L+++ ++ D ++I G++ K L R L+ + Sbjct: 88 SGESMSGAGIFDGDMLVVDRLLRPRHRD-VVIAVVAGELTVKRLELRADGP-WLVPDHPD 145 Query: 202 YPVDTVEMS 210 YP Sbjct: 146 YPALRANPE 154 >gi|222444537|ref|ZP_03607052.1| hypothetical protein METSMIALI_00149 [Methanobrevibacter smithii DSM 2375] gi|222434102|gb|EEE41267.1| hypothetical protein METSMIALI_00149 [Methanobrevibacter smithii DSM 2375] Length = 207 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 ++ TSMLP + G +++N V+ GD ++ + K + I L+S Sbjct: 112 VIYQVDGTSMLPTLQDGQNVLVNKTQDVHVGDIVVANSSEYGNIIKRVDEVNNNQIHLVS 171 Query: 198 LNCC 201 N Sbjct: 172 DNKN 175 >gi|148642292|ref|YP_001272805.1| signal peptidase I [Methanobrevibacter smithii ATCC 35061] gi|148551309|gb|ABQ86437.1| signal peptidase I [Methanobrevibacter smithii ATCC 35061] Length = 204 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 ++ TSMLP + G +++N V+ GD ++ + K + I L+S Sbjct: 109 VIYQVDGTSMLPTLQDGQNVLVNKTQDVHVGDIVVANSSEYGNIIKRVDEVNNNQIHLVS 168 Query: 198 LNCC 201 N Sbjct: 169 DNKN 172 >gi|110798931|ref|YP_697253.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110673578|gb|ABG82565.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 223 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I ++ +T LA+K G+ N+ + S + K+L Sbjct: 3 RVGERIKEARQKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118 I ++ +K+ + + Sbjct: 61 DINMVVTDEELQKELKAEKQVRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + K ++ M ++ D+ + S ++ L++ Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G V + + L+S N +T + +I+ IA+ Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEIKAIAK 215 >gi|220921966|ref|YP_002497267.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946572|gb|ACL56964.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 227 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/179 (10%), Positives = 41/179 (22%), Gaps = 6/179 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE-----SIFKILA 63 I + R +T LA A + T+ +K +R + P I ++ Sbjct: 4 IGNNVRNARLRLGMTQEQLAEAANVSQTTIDKIERGLTKRSKYLPWIAIALSVDISELDN 63 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-E 122 + + + + + Sbjct: 64 SLRYSPTEKEKDVGEVVSRPHLLAFRPGKNEQGTGNDSIPVYIATEAGNGGFLKIDFSNV 123 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + +M P GD+ ++ + V G +L + + Sbjct: 124 DYALRPRNLDNSPSAYGLYIAGGTMHPELSPGDMAFFDTRLPVIVGSTVLFQRDDDVVT 182 >gi|192359942|ref|YP_001982170.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] gi|190686107|gb|ACE83785.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] Length = 201 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 14/174 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 SH + + + E HNL+ LA++AG+ +S + ++ + PS +S+ +IL A Sbjct: 15 SHMDLGRKLKAIREAHNLSQRELAKRAGITNSSISMIEQGQV-----SPSVQSLERILTA 69 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNKWNTVGVPEI 123 ++ + + + L + Sbjct: 70 FPLSLAEFFSPGGILPAPVLITRQLLELQQDNQVYGATIQHLVNGIDKPELDMQRIFLPP 129 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + YA + L +I+ + GD + ++ Sbjct: 130 GTRSALAYARVGDVSAVLLDGYITL----YCGEVIM----SLQPGDGVYLRRGH 175 >gi|148358333|ref|YP_001249540.1| hypothetical protein LPC_0196 [Legionella pneumophila str. Corby] gi|296105684|ref|YP_003617384.1| hypothetical protein lpa_00264 [Legionella pneumophila 2300/99 Alcoy] gi|148280106|gb|ABQ54194.1| hypothetical protein LPC_0196 [Legionella pneumophila str. Corby] gi|295647585|gb|ADG23432.1| hypothetical protein lpa_00264 [Legionella pneumophila 2300/99 Alcoy] Length = 217 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 23/200 (11%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 L+P+ LAR+ G+ + + P ++ +I + TI QLL L + Sbjct: 28 LSPAALARQLGIPTNKITRILNGDVT----DPKASTLLQIANYFDITIEQLLGLEPIARQ 83 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141 ++++ L + + V I + Sbjct: 84 EEIEQQQATRQLPIFEFSKVNQSN----AAKEWYRWVENE-----------IAGEYYALA 128 Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV--AKVLISRRGRSIDLMSLN 199 P + K ILI+N+ I+ +LIK + K + G I L +N Sbjct: 129 IDTDLYEPTFPKNSILIINTDIEPEDRSYILIKKKNDPSYCSIKKYV-LEGNQIYLYPIN 187 Query: 200 CCYPVDTVEMSDIEWIARIL 219 PV+ + + IA ++ Sbjct: 188 PKLPVEIFD-DHLYTIAGVI 206 >gi|307546683|ref|YP_003899162.1| hypothetical protein HELO_4093 [Halomonas elongata DSM 2581] gi|307218707|emb|CBV43977.1| hypothetical protein HELO_4093 [Halomonas elongata DSM 2581] Length = 147 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 5/106 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLL 172 + + H + + + + SM+ GD+LI++ +++ GD ++ Sbjct: 33 ADDYLETELDLVDH--LVQHPSATFYVRAKGESMMRHGIYDGDLLIVDRSLEPRNGDVII 90 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 I G++ K L GR L+S N + +E + + Sbjct: 91 IAVD-GELTCKQLDLI-GRRPYLVSGNSAFTPIPLEGRECHVWGVV 134 >gi|170725490|ref|YP_001759516.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810837|gb|ACA85421.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 182 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 44/138 (31%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DIGASLKAVRKIKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + + + + LL +P P Sbjct: 57 SLVDFFSMEDTAASEAKVVYRSDELLDIGDGNLDYKLVGRDYPNRAMSVMSETYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++ + Sbjct: 117 GEEMLKHEGEEAAIVIEG 134 >gi|23465571|ref|NP_696174.1| hypothetical protein BL1002 [Bifidobacterium longum NCC2705] gi|189439618|ref|YP_001954699.1| SOS-response transcriptional repressor [Bifidobacterium longum DJO10A] gi|227546168|ref|ZP_03976217.1| SOS mutagenesis protein UmuD [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621790|ref|ZP_04664821.1| peptidase S24 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133017|ref|YP_004000356.1| lexa2 [Bifidobacterium longum subsp. longum BBMN68] gi|317481879|ref|ZP_07940906.1| peptidase S24-like protein [Bifidobacterium sp. 12_1_47BFAA] gi|322688821|ref|YP_004208555.1| hypothetical protein BLIF_0634 [Bifidobacterium longum subsp. infantis 157F] gi|23326237|gb|AAN24810.1| hypothetical protein with similarity to ImpA of Salmonella involved in UV protection and mutation [Bifidobacterium longum NCC2705] gi|189428053|gb|ACD98201.1| SOS-response transcriptional repressor [Bifidobacterium longum DJO10A] gi|227213149|gb|EEI81021.1| SOS mutagenesis protein UmuD [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514981|gb|EEQ54848.1| peptidase S24 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517117|emb|CBK70733.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Bifidobacterium longum subsp. longum F8] gi|311774004|gb|ADQ03492.1| LexA2 [Bifidobacterium longum subsp. longum BBMN68] gi|316916670|gb|EFV38065.1| peptidase S24-like protein [Bifidobacterium sp. 12_1_47BFAA] gi|320460157|dbj|BAJ70777.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 128 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 A + + SM+ GD+LI++ ++ GD ++ +I K L+SR Sbjct: 9 AMAHEATLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGD-VVAAVMDDEIAIKRLVSR 67 Query: 189 RGRSIDLMSLNCCYPVD 205 G +I L + N YP Sbjct: 68 AGITI-LHAENPRYPDY 83 >gi|90581416|ref|ZP_01237211.1| LexA repressor [Vibrio angustum S14] gi|90437393|gb|EAS62589.1| LexA repressor [Vibrio angustum S14] Length = 206 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 60/215 (27%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTLRQQEVFDLIKAKIDETGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + L+ G G G Sbjct: 46 HLKALAR------------KEVLEIIPGASRGIRLLVNQEEPEEQGLPLIGRVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ V+ G + + Sbjct: 94 AQEHVEAHYEVDPMLFKPRADFLLRVNGMSMKNIGIMDGDLLAVHKTQDVHNGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + + L + N + V++ Sbjct: 153 VDDDVTVKRLDKQGA-KVLLHAENEEFSPIEVDLE 186 >gi|323492937|ref|ZP_08098077.1| LexA repressor [Vibrio brasiliensis LMG 20546] gi|323312830|gb|EGA65954.1| LexA repressor [Vibrio brasiliensis LMG 20546] Length = 206 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KQAIEIIPGASRGIRILLEDAANDDQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVETHYQVDPSMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G ++ L + N + V++ Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFEPIKVDL 185 >gi|323494354|ref|ZP_08099466.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] gi|323311517|gb|EGA64669.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] Length = 182 Score = 58.6 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 59/195 (30%), Gaps = 22/195 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + E+ L+ LA++AG+ ++ + + PS S+ K+L+ Sbjct: 4 EIGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAV-----SPSVASLSKLLSKIPT 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + +++E P + S G G T + Sbjct: 59 SMAEFFAIDDPQPEQFYTRKEEQPEIGQGEISYRQVGHFHGDRHIGMLRET--LKPNADT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVL 185 + + Q+ Q L ++ + ++ GD Sbjct: 117 GEEMLTHEGQECGVIVQGQLE---------LTVDLQTVTLHVGDGYYFDSTRPH----RF 163 Query: 186 ISRRGRSIDLMSLNC 200 + ++S N Sbjct: 164 RNTAEEECVIISANS 178 >gi|332098137|gb|EGJ03110.1| protein umuD [Shigella dysenteriae 155-74] Length = 79 Score = 58.6 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD+LI++SAI + GD ++ G+ K L R ++ L+ +N Y T+ Sbjct: 6 ISDGDLLIVDSAITASHGDIVIAAVD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSE 62 Query: 211 D-IEWIARIL 219 D ++ ++ Sbjct: 63 DTLDVFGVVI 72 >gi|325983090|ref|YP_004295492.1| peptidase S24/S26A/S26B, conserved region [Nitrosomonas sp. AL212] gi|325532609|gb|ADZ27330.1| Peptidase S24/S26A/S26B, conserved region [Nitrosomonas sp. AL212] Length = 206 Score = 58.6 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 7/109 (6%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V + + + SM+ + D ++++ + GD +L Sbjct: 93 ADDHVE--KRLDVSEFLIDHAASTFFVTIRGESMIDVGLLPDDKVVVDRCKTPSHGDIVL 150 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS-DIEWIARI 218 + K+L + LM N Y + E + Sbjct: 151 AVVDR-EFTIKILDYGANKMPRLMPANSTGAYRPIYIRPDTQFEIFGVV 198 >gi|312887770|ref|ZP_07747358.1| Peptidase S24/S26A/S26B, conserved region [Mucilaginibacter paludis DSM 18603] gi|311299756|gb|EFQ76837.1| Peptidase S24/S26A/S26B, conserved region [Mucilaginibacter paludis DSM 18603] Length = 152 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 46/112 (41%), Gaps = 5/112 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + + S + + + + S+ + +GDI++++ +++ D ++ Sbjct: 33 ADDYLE--DAISLDDICVSNPASTFLGRVKGQSLRDICIYEGDIVVIDKSLEPEHRDLVV 90 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARILWASQ 223 G+ AK+L + I L+S N + + +++D + + Q Sbjct: 91 CAID-GEFNAKILHLDALQGIRLLSANPGFQPIVIHDLTDFRVWGVVTYIIQ 141 >gi|269119772|ref|YP_003307949.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268613650|gb|ACZ08018.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 229 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 18/222 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E +++ + ++ + LA G+ P + R E + I E Sbjct: 5 GEILEKYLKGR-MSMTDLAGLLGITPQYISSVLNNTK--RPSKNFLEKFYMIFDVMEEDK 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-----VGVP-EI 123 + + +++ + L + FP + + E Sbjct: 62 ENIENYEEFRRLPENFQKEYLKLKEKNSKNTPKGSGILKFPLKAIVESGLGLLNELEKEE 121 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGD 179 ++ K + P + D+L+++ + ++K + Sbjct: 122 YISIPETDSVSENSFFIKIYGNELEPEFINKDMLLMDPESCGELYLMNNKICVLKHN-NE 180 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI---ARI 218 + + + + + L +N + +IE I R+ Sbjct: 181 LFLRRVEYFK-EVVILRCINNKLNPIVITGENIEKIQCTGRV 221 >gi|302135318|ref|ZP_07261308.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 129 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 10/127 (7%) Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGD 155 + G V Y + + SM +G Sbjct: 1 MYRYPVVSSVAAGAWAEAVEDGFSDRYETSDYKAKGPAFWLEVVGDSMTAPSGTSVPEGM 60 Query: 156 ILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214 ++++++ ++ G ++ P + D K LI + L LN Y + D + Sbjct: 61 LILVDTGVEARPGKLVVAKLPSSNDATFKKLI-DDAGQLYLKPLNPGYSMIKCS-DDCKI 118 Query: 215 IA---RI 218 I R+ Sbjct: 119 IGVAVRV 125 >gi|27311229|ref|NP_758899.1| ORF6 [Vibrio phage VHML] gi|26891749|gb|AAN12361.1| ORF6 [Vibrio phage VHML] Length = 226 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 14/223 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIF 59 I + R+ LT L+R + P++ ++ + G + +T Sbjct: 5 KRMIEIDIGPVLKRIRYERGLTLQKLSRLTDDKVLPSNISRIESAGAGATLKTLTT---- 60 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTV 118 + A + +L + K ++ + + +G + +S P G+ V Sbjct: 61 -LANALGTSPSDILREAEGGDKVITKPQQVLYVPVLSWVQAGTWTESPEQPADGDYDEWV 119 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 P + + + S+ + N I LL+ +T Sbjct: 120 EAPRGAPGRLSAFEFKGIGMQAPI-GKSLPGRMLHSCLTQPNKQITAR---LLLLAWQTQ 175 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220 + + G L LN Y V S++ +L W Sbjct: 176 ESTRSEQLIIDGPHQYLKPLNPSYRTIEVN-SEVHVCGVVLAW 217 >gi|212636884|ref|YP_002313409.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212558368|gb|ACJ30822.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 182 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DIGASLKTVRKEKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + + + + LL FP P Sbjct: 57 SLVEFFSIEDETVSEQKVVYRSDELLDIGDGVLDFKLIGRDFPNRAMSVMSETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + Q+ + Sbjct: 117 GIEMLKHEGQEAAMVIEG 134 >gi|156318637|ref|XP_001618084.1| hypothetical protein NEMVEDRAFT_v1g9678 [Nematostella vectensis] gi|156197349|gb|EDO25984.1| predicted protein [Nematostella vectensis] Length = 69 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + K SM+ D+L+++ +I + G+ K L Sbjct: 2 KEATFFAKVSGQSMIGAGLDDNDLLVIDRSIPPTNNKIAVCFLD-GEFTVKRL-RVENDE 59 Query: 193 IDLMSLNCCY 202 + L N Y Sbjct: 60 VWLQPENPNY 69 >gi|160890216|ref|ZP_02071219.1| hypothetical protein BACUNI_02656 [Bacteroides uniformis ATCC 8492] gi|156859948|gb|EDO53379.1| hypothetical protein BACUNI_02656 [Bacteroides uniformis ATCC 8492] Length = 233 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 26/223 (11%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + E+ L P+ +GL N R P+ E I K N Sbjct: 10 LIEKEGLNPNQFYTISGLGNGYLNNV-----GESFRKPTIEKIKKSFPHWNMDWILYEKG 64 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ- 134 + E E + + G I + + I Sbjct: 65 EPISNISKENIEILEAIPLNQNYIINVPLVNQYAQAGYLCGFQDAAYIATLPTIPFIIDH 124 Query: 135 ---TQDTRHKTQDTSM----LPLYRKGDILILNSAIQ---------VNCGDRLLIKPRTG 178 + + SM Y +GD L+ + D +++ Sbjct: 125 EAKGNYVAFEVRGDSMNDGTEESYLEGDRLLCREIAPYLWAESKLHIRKWDFVIV--HED 182 Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I+ K + + +I + SLN YP ++++++ I ++ Sbjct: 183 GILVKRIIDHNVENHTITIHSLNDMYPDRVIDLAEVRQIFNVI 225 >gi|298251517|ref|ZP_06975320.1| Peptidase S24/S26A/S26B, conserved region [Ktedonobacter racemifer DSM 44963] gi|297546109|gb|EFH79977.1| Peptidase S24/S26A/S26B, conserved region [Ktedonobacter racemifer DSM 44963] Length = 164 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 12/108 (11%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 ++ + + SM + D+++++ A+Q G+ ++ Sbjct: 36 ERWRERSLDLNDLLQMHPEATFFMLVRGESMKGVGIYDRDLVVVDRALQATHGNIIIALV 95 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI---LW 220 G K L S++L S + +P + R+ +W Sbjct: 96 N-GGFSIKQLRILSDGSMELASAHPRFPPLVITP-------RVSFEVW 135 >gi|226362101|ref|YP_002779879.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240586|dbj|BAH50934.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 186 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 9/140 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I M + LT + L+ GL P ++ +R PS ++ ++ + Sbjct: 4 VGNKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLAN-----PSFTTLAQLAHGLDIP 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----WNTVGVPEIR 124 + + +K + L+ G + P + P Sbjct: 59 VGRFFIGQPDTTSPVVRKHERRNLVGVTKKSMGEAVYELLTPEQGGGALEAQWIETPPGH 118 Query: 125 SPHNGIYAIQTQDTRHKTQD 144 + ++ Sbjct: 119 DTSATPFRHSGEEFGIIISG 138 >gi|213692631|ref|YP_002323217.1| putative prophage repressor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524092|gb|ACJ52839.1| putative prophage repressor [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 128 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM+ GD+LI++ ++ GD ++ +I K L+SR + Sbjct: 13 EATLFVMQMAGDSMINAGIHNGDLLIVDRSLTPVPGD-VVAAVMDDEIAIKRLVSRASTT 71 Query: 193 IDLMSLNCCYPVD 205 I L + N YP Sbjct: 72 I-LHAENPRYPDY 83 >gi|28899719|ref|NP_799324.1| LexA repressor [Vibrio parahaemolyticus RIMD 2210633] gi|260361671|ref|ZP_05774698.1| repressor LexA [Vibrio parahaemolyticus K5030] gi|260879367|ref|ZP_05891722.1| repressor LexA [Vibrio parahaemolyticus AN-5034] gi|260897194|ref|ZP_05905690.1| repressor LexA [Vibrio parahaemolyticus Peru-466] gi|260899147|ref|ZP_05907542.1| repressor LexA [Vibrio parahaemolyticus AQ4037] gi|31076752|sp|Q87KN2|LEXA_VIBPA RecName: Full=LexA repressor gi|28807971|dbj|BAC61208.1| LexA repressor [Vibrio parahaemolyticus RIMD 2210633] gi|308089330|gb|EFO39025.1| repressor LexA [Vibrio parahaemolyticus Peru-466] gi|308092835|gb|EFO42530.1| repressor LexA [Vibrio parahaemolyticus AN-5034] gi|308107501|gb|EFO45041.1| repressor LexA [Vibrio parahaemolyticus AQ4037] gi|308111297|gb|EFO48837.1| repressor LexA [Vibrio parahaemolyticus K5030] gi|328472453|gb|EGF43319.1| LexA repressor [Vibrio parahaemolyticus 10329] Length = 206 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KQAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G ++ L + N + V++ Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFAPIQVDL 185 >gi|330721314|gb|EGG99396.1| Error-prone repair protein UmuD [gamma proteobacterium IMCC2047] Length = 144 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 + P G + + + + + + + +SM + D+LI Sbjct: 18 PYFISQVPAGFPSPADDYMD--KKLDLNEHLIQHPSATFYCRVSGSSMTAVGIFDDDLLI 75 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIAR 217 ++ A++ GD +++ G + K+L R + L+ N YP + E +D E Sbjct: 76 VDRALKPRQGD-VVLAFVNGGLACKILDIRGKQ---LLPANDQYPPIPIREGTDFEVEGV 131 Query: 218 IL 219 ++ Sbjct: 132 VI 133 >gi|323517754|gb|ADX92135.1| putative repressor protein from bacteriophage [Acinetobacter baumannii TCDC-AB0715] Length = 246 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 27/218 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I ++R+ + +T + LA P +R R S FK+ N Sbjct: 20 KQIHPTMERVYQVTKITGADLAYALDETPQIVYNWER-------RGISKTGAFKVSNKFN 72 Query: 67 ETICQLLDLPFSDGRTTEKKEK---------EIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +L S + + +K +P+ + G G++ + Sbjct: 73 IDVGWILTGKGSPSIDSVRNKKITTDTKRGGWVPVKSYSKMGMDGYYTEMGYLGNGGDGY 132 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 V + SM P R G ++ + + + + ++ + Sbjct: 133 VP----------SLTAGPNAYAVRGTGDSMYPAIRNGWYVVCDPDAEPTPTEFVEVQLKD 182 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 G K I + L+++N T++M D+ I Sbjct: 183 GRRTIKEFIGIVNNVLHLLAVNGE-ARMTIDMEDVSAI 219 >gi|331646999|ref|ZP_08348098.1| protein SamB [Escherichia coli M605] gi|331044316|gb|EGI16447.1| protein SamB [Escherichia coli M605] Length = 297 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 7/110 (6%) Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154 + FP+ + E + + SM + G Sbjct: 14 STAPLFTERCPAGFPSPAAD---YMEEELDLNTYCIRHPASTFFVRAIGDSMKDMGLHSG 70 Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 D++I++ A + GD ++ + G+ K L + + L+ +N P Sbjct: 71 DLMIVDKAEKPQQGDIVIAETD-GEFTVKRLQLKP--RVALLPMNPVSPP 117 >gi|317480198|ref|ZP_07939306.1| peptidase S24-like protein [Bacteroides sp. 4_1_36] gi|316903636|gb|EFV25482.1| peptidase S24-like protein [Bacteroides sp. 4_1_36] Length = 227 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 26/223 (11%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + E+ L P+ +GL N R P+ E I K N Sbjct: 4 LIEKEGLNPNQFYTISGLGNGYLNNV-----GESFRKPTIEKIKKSFPHWNMDWILYEKG 58 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ- 134 + E E + + G I + + I Sbjct: 59 EPISNISKENIEILEAIPLNQNYIINVPLVNQYAQAGYLCGFQDAAYIATLPTIPFIIDH 118 Query: 135 ---TQDTRHKTQDTSM----LPLYRKGDILILNSAIQ---------VNCGDRLLIKPRTG 178 + + SM Y +GD L+ + D +++ Sbjct: 119 EAKGNYVAFEVRGDSMNDGTEESYLEGDRLLCREIAPYLWAESKLHIRKWDFVIV--HED 176 Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 I+ K + + +I + SLN YP ++++++ I ++ Sbjct: 177 GILVKRIIDHNVENHTITIHSLNDMYPDRVIDLAEVRQIFNVI 219 >gi|332661789|ref|YP_004451259.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100] gi|332337286|gb|AEE54386.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter hydrossis DSM 1100] Length = 167 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 8/138 (5%) Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 + + P G + V E + + + Sbjct: 24 EADTRVPVIEISHIHSNLPYFQSVPAGFPSPADDYVE--EKLNLDKYLIKNPAATFFVRV 81 Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM DILI++ ++ D ++ G K L+ L N Sbjct: 82 SGDSMTGAGIYPEDILIVDRSLSAKTDDVIIALLD-GAFTVKRLVY-EQGRYWLKPENPQ 139 Query: 202 YPVDTVEMSDIEWIARIL 219 + V + ++ Sbjct: 140 LALIEVMAESEFLVWGVV 157 >gi|313200830|ref|YP_004039488.1| peptidase s24 and s26 domain-containing protein [Methylovorus sp. MP688] gi|312440146|gb|ADQ84252.1| peptidase S24 and S26 domain protein [Methylovorus sp. MP688] Length = 80 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 +G L+++ +I+ ++ G+++ K L R + L+S N Y + Sbjct: 6 IFEGSTLVVDRSIKAKSSSIVV-AMVEGELMVKRLYKRGA-VVKLLSDNPAYAPIALTEG 63 Query: 211 DIEWIARIL 219 I ++ Sbjct: 64 QELIIWGVV 72 >gi|226951294|ref|ZP_03821758.1| UmuD family protein [Acinetobacter sp. ATCC 27244] gi|226837967|gb|EEH70350.1| UmuD family protein [Acinetobacter sp. ATCC 27244] Length = 161 Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + + K SM D LI++ ++ D ++ D Sbjct: 58 IDMNEHLISNECATFIVKVGSLSMKNAGIDIDDELIVDRSLDAKHDDIVVALID-NDFTV 116 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L + R+ L + N Y ++ I ++ Sbjct: 117 KRLKIEQHRT-WLKAENPDYDDIHLKDGQQLIIWGVV 152 >gi|253995835|ref|YP_003047899.1| peptidase S24 and S26 domain-containing protein [Methylotenera mobilis JLW8] gi|253982514|gb|ACT47372.1| peptidase S24 and S26 domain protein [Methylotenera mobilis JLW8] Length = 205 Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 4/97 (4%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 + + P+ + + Q SM+ + GD +++ A + GD +L Sbjct: 93 EDHLEQRLDPNEFLIDKKDTTFFVTIQGYSMVDVGLLPGDKAVVDRAKIASIGDIVLAVI 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS 210 G+ K L + ++ L+ N Y + Sbjct: 153 D-GEFTIKTLSRSKEGNVRLLPANSSADYAPINITEE 188 >gi|324120120|ref|YP_004249881.1| hypothetical protein pc15-k-030 [Klebsiella pneumoniae] gi|323388248|gb|ADX60397.1| hypothetical protein pc15-k-030 [Klebsiella pneumoniae] Length = 224 Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 7/155 (4%) Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 T + F G T K + FP+ Sbjct: 65 TGLPAHTVYIYSFKRGENTMKFIPAVSEASIVKIPLFTERCPAGFPSPAAD---YTESEL 121 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + + SM + GD+++++ A Q GD ++ G+ K Sbjct: 122 DLNEYCIHRRHSTYFVRAIGNSMTDIGLYSGDLMVVDKAEQPRHGDIVI-AEIEGEFTVK 180 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L+ L ++N +P + ++ + Sbjct: 181 RLLLTP--RPALQAMNPDFPSLYPDPETLQIFGVV 213 >gi|90414172|ref|ZP_01222153.1| hypothetical protein P3TCK_08893 [Photobacterium profundum 3TCK] gi|90324722|gb|EAS41260.1| hypothetical protein P3TCK_08893 [Photobacterium profundum 3TCK] Length = 128 Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 4/98 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ GD+L+++ A Q G R++I + Sbjct: 24 EQLELDEYLIRNPNATFLLRASGESMIGAGIFDGDLLVVDRAEQAVAG-RVVIVRIYDEF 82 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ + L + N + + D E + Sbjct: 83 TCKRLMRY-NDAWWLKAENPTFRAFPIP-EDAEIFGVV 118 >gi|295115454|emb|CBL36301.1| SOS regulatory protein LexA [butyrate-producing bacterium SM4/1] Length = 204 Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 23/214 (10%), Positives = 56/214 (26%), Gaps = 36/214 (16%) Query: 9 IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I +D+ H+ +PS +A+ G+ + + Sbjct: 12 ICTFVDQYYREHHASPSVNEIAQGVGVSKATSYRY-----------------------LV 48 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + T++ K + P + V +P+ Sbjct: 49 AMNERGMLSYDCKTIVTKQVGKCTSGYFSAPVVGSIRCGDPEREEESVEEYVSLPKSIFG 108 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + + SM+ D++++ GD ++ + K Sbjct: 109 -------EGKFYILRAKGDSMVDAGIEDEDLIVIRIQDTAAVGDIVVALDEDNENTLKTF 161 Query: 186 --ISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIA 216 I + L N YP + + + Sbjct: 162 GGIDEENGDVILRYANQTKYPDKEIRVKQLIVQG 195 >gi|46190225|ref|ZP_00206374.1| COG1974: SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Bifidobacterium longum DJO10A] Length = 119 Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Query: 132 AIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 A + + SM+ GD+LI++ ++ GD ++ +I K L+SR G Sbjct: 2 AHEATLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGD-VVAAVMDDEIAIKRLVSRAG 60 Query: 191 RSIDLMSLNCCYPVD 205 +I L + N YP Sbjct: 61 ITI-LHAENPRYPDY 74 >gi|237720871|ref|ZP_04551352.1| predicted protein [Bacteroides sp. 2_2_4] gi|229449706|gb|EEO55497.1| predicted protein [Bacteroides sp. 2_2_4] Length = 256 Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 30/221 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ID E+++++ + L GL + + PS + I L Sbjct: 55 KTIDAFCEKYDVSRAWLYTGEGLFAKTPSG---------QIEPSDKDIRDALKNARM--- 102 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 ++ + + Y P + F +S + +PE + Sbjct: 103 --QSDSTISKVAPYLQDILVKVKYVPMDAAASFVESLYNTAYEIDSYGVMPEEGEVLDDS 160 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVLISR 188 Y + + SM P G ++ + ++ + K ++ Sbjct: 161 Y------MVFQVRGDSMEPTIPDGAKILARKIEEGLWESASGVVSIVYGKTLSVKRILKN 214 Query: 189 R---GRSIDLMSLNCCYPVDTVEMSDIEWIA---RILWASQ 223 + L + N + VE +I + RI+ SQ Sbjct: 215 SLFLDNVLTLKADNPKHGQLDVERREIRGMWQALRII--SQ 253 >gi|261249994|ref|ZP_05942571.1| SOS-response repressor and protease LexA [Vibrio orientalis CIP 102891] gi|260939498|gb|EEX95483.1| SOS-response repressor and protease LexA [Vibrio orientalis CIP 102891] Length = 206 Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKNKIESTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KEAIEIIPGASRGIRILLEDAANDDEGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVETHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G ++ L + N + V++ Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFAPIKVDL 185 >gi|289807210|ref|ZP_06537839.1| SamA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289827509|ref|ZP_06546119.1| SamA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 69 Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM + GD+++++ A + GD ++ G+ K L + Sbjct: 1 PSSTFFVRAIGDSMRDMGLHSGDLMVVDKAEKPLQGDIVI-AETEGEFTVKRLQLKP--R 57 Query: 193 IDLMSLNCCYP 203 I L+ +N Y Sbjct: 58 IALLPMNPAYH 68 >gi|299533285|ref|ZP_07046669.1| DNA polymerase V [Comamonas testosteroni S44] gi|298718815|gb|EFI59788.1| DNA polymerase V [Comamonas testosteroni S44] Length = 140 Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SM GDI++++ A++ G ++ D KVL G Sbjct: 48 PQATFLLRVAGPSMREYGIDDGDIIVVDRALRARHGSIVVAVLD-NDFTVKVLH-NAGGC 105 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 L + N YP + + I ++ Sbjct: 106 FKLRAGNPTYPDIVPKENQELEIWGVV 132 >gi|121533664|ref|ZP_01665491.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] gi|121307655|gb|EAX48570.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] Length = 66 Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 3/63 (4%) Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 +I+ GD ++ + K R I L N + + + Sbjct: 1 MIVREQNTARNGDIVVALLDGEEATVKRFYKERD-YIRLQPENNYMEPIYSQN--VTILG 57 Query: 217 RIL 219 +++ Sbjct: 58 KVV 60 >gi|265756280|ref|ZP_06090609.1| predicted protein [Bacteroides sp. 3_1_33FAA] gi|263233871|gb|EEZ19480.1| predicted protein [Bacteroides sp. 3_1_33FAA] Length = 219 Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 67/236 (28%), Gaps = 44/236 (18%) Query: 3 SFSHKKIWEAID-------RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + ++ E + E L+ +A+K G + S K + W Sbjct: 1 MSTKERFVEYLKIKGIGQTAFEESAGLSRGAIAKKTGFNADSIEKIASACPDLNINWL-- 58 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 T + T K+ +I + GF + G Sbjct: 59 --------ITGIGNMTINTNSSITETPTTNKDIKILDIRVCAGHGIGFDGNENKVIG--- 107 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLI 173 V +PE T SM +Y GD + + + + + Sbjct: 108 -YVNIPE-----------FTGCYGITVYGDSMYDMYMSGDTIFVREIKDKRNIDNGQPYM 155 Query: 174 KPRTGDIVAKVLISRRGRSIDLMS-----LNCC----YPVDTVEMS-DIEWIARIL 219 D + K++ R ++S N YP +++ D+ + +++ Sbjct: 156 IITKEDRLLKMIHIDYERKKTILSSYNNIANPDGKRKYPDMEIDIDNDVIHLYKVV 211 >gi|89885828|ref|YP_516026.1| putative prophage repressor [Rhodoferax ferrireducens T118] gi|89347826|gb|ABD72028.1| putative prophage repressor [Rhodoferax ferrireducens T118] Length = 146 Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SM GDIL+++ AI+ G ++ GD K L +R Sbjct: 53 PQATYFLRASGQSMIEAGIFDGDILVVDRAIKPRHGHIVIAILD-GDFTVKQLH-QRQGR 110 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 I L + N + + I ++ Sbjct: 111 IKLKAANPTFAEIVPKDGQTIEIWGVV 137 >gi|332661938|ref|YP_004451407.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100] gi|332337435|gb|AEE54534.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter hydrossis DSM 1100] Length = 150 Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V E + + + SM DILI++ ++ D ++ Sbjct: 38 ADDYVE--EKLNLDKYLIKNPAATFFVRVSGDSMTGAGIYPEDILIVDRSLSAKTDDVII 95 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G K L+ L N + V + ++ Sbjct: 96 ALLD-GAFTVKRLVY-EQGRYWLKPENPQLALIEVGAESEFLVWGVV 140 >gi|302877875|ref|YP_003846439.1| Peptidase S24/S26A/S26B, conserved region [Gallionella capsiferriformans ES-2] gi|302580664|gb|ADL54675.1| Peptidase S24/S26A/S26B, conserved region [Gallionella capsiferriformans ES-2] Length = 153 Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 6/109 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172 + V + S + + + SM GD+L+++ A+ G ++ Sbjct: 44 ADDYVE--QRISLDEHLIGRRESTFFMRVAGESMRGLGIFDGDLLVVDRALPATSGCVVI 101 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220 G+ K L+ + L + + Y ++ I ++ W Sbjct: 102 AVVD-GEFTVKQLLHTSDGPV-LRAAHPDYDDMRIQPEQDFSIWGVVSW 148 >gi|330892375|gb|EGH25036.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. mori str. 301020] gi|330894653|gb|EGH27314.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. mori str. 301020] Length = 84 Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 K SM +++++ + + G ++ + + K+LI + G + Sbjct: 12 HIYVAKIDGDSMEGAKIFHDSLVVVDRSRTPSSGSIVIAALN-NEPLCKILILQ-GDHVV 69 Query: 195 LMSLNCCYPVDT 206 L S N YP Sbjct: 70 LKSANPAYPPRE 81 >gi|325840878|ref|ZP_08167213.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490135|gb|EGC92473.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 330 Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H ++ I + +R ++ LA + G+ + + +R + P E + K+ A Sbjct: 3 HHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQ-----PDLEMLMKLAAIF 57 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + L+ + + + + Sbjct: 58 ETDLDGLMGIKSDIKEEPVELNLKPMKWMY 87 >gi|160888118|ref|ZP_02069121.1| hypothetical protein BACUNI_00526 [Bacteroides uniformis ATCC 8492] gi|270295144|ref|ZP_06201345.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478142|ref|ZP_07937317.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] gi|156862429|gb|EDO55860.1| hypothetical protein BACUNI_00526 [Bacteroides uniformis ATCC 8492] gi|270274391|gb|EFA20252.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905740|gb|EFV27519.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] Length = 240 Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 66/221 (29%), Gaps = 12/221 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAAT 65 I A ++A+ T S LA G+ ++ + S + + T Sbjct: 13 DIIKRA--KLAKEFK-TDSELAAFLGISRSTLSNWNARNSIDFPLLLGSLDDVDYNWLLT 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIR 124 + + + E P + N + P+ Sbjct: 70 GKGSPAHHSKFCDNDLVQGEVEILHTPKTADPMDDRSVTLYDISAAANLKTLLADRPQYA 129 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD-- 179 I I D SM P+ + GDI+ + V G+ L+ G Sbjct: 130 LGRIVIPNIPVCDGAVYVSGDSMYPILKSGDIVGFKSIRDFTDVIYGEMYLVSFERGGDE 189 Query: 180 -IVAKVL-ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + S R I L+S N + + ++ + +A + Sbjct: 190 YLAVKYVNHSERPDCIRLVSYNNHHDPMDLPLAAVNAMAIV 230 >gi|154503786|ref|ZP_02040846.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149] gi|153795886|gb|EDN78306.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149] Length = 262 Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 66/236 (27%), Gaps = 28/236 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATN 66 KI I NL+ LA K + P++ + + + + + A Sbjct: 2 KIGNQIRHRRTELNLSRGELANKIQVTPSAIANYENGVSYPKPDILVALMNALDVDANYL 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-----FFDSGVFPTGNKWNTVGVP 121 R E++ +L + G + N+ + +P Sbjct: 62 YWNYLSNSTIQRLYRKVLSPEEKESILKYRELSENGKSLVRLIIDEEYKRMNQSEYINLP 121 Query: 122 E------------------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 + + D + P+++K DIL L I Sbjct: 122 FYRPGIRKVHSGFLFQDTTQTIRVRRKHVPKDSDFCFQVLIDRYQPVFQKNDILALQR-I 180 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 + + I ++S G L SLN P V E +E I +I Sbjct: 181 NASHNEI--GLFWFNGIYYIRILSEEGSIRRLRSLNVIDPDIVVNEQDQLECIGKI 234 >gi|226326602|ref|ZP_03802120.1| hypothetical protein PROPEN_00452 [Proteus penneri ATCC 35198] gi|225205027|gb|EEG87381.1| hypothetical protein PROPEN_00452 [Proteus penneri ATCC 35198] Length = 83 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD+L ++ V+ G ++ + ++ K + G I+L + N + V++ Sbjct: 6 IMDGDLLAVHKTQDVHNGQVIVARI-EDEVTVKRF-KKSGNKIELHAENPEFSPIIVDLR 63 Query: 211 D 211 + Sbjct: 64 E 64 >gi|297246897|ref|ZP_06930678.1| CI-like repressor [Staphylococcus aureus A8796] gi|297176265|gb|EFH35551.1| CI-like repressor [Staphylococcus aureus A8796] Length = 256 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 6/119 (5%) Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIY---AIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 TG +I A D SM P+ ++G + Sbjct: 139 YIACGATGAGIGEELYDDILHEEVFFKEDEAPSNADFCILINGDSMEPMLKQGTYAFIKK 198 Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 + G L+ G + K + I+L+SLN Y V S+I+ + +++ Sbjct: 199 EDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 255 >gi|209696292|ref|YP_002264223.1| LexA repressor [Aliivibrio salmonicida LFI1238] gi|226694231|sp|B6ENU0|LEXA_ALISL RecName: Full=LexA repressor gi|208010246|emb|CAQ80577.1| LexA repressor [Aliivibrio salmonicida LFI1238] Length = 207 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 62/214 (28%), Gaps = 33/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++++E I E + P + +AR+ G R+ + E Sbjct: 1 MKPLTARQQEVFELIKAKIEDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + I L G G G Sbjct: 46 HLKALARK-----------QAIEIIPGASRGIRILLQDPVEPEDLGLPLIGQVAAGEPIL 94 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V+ G + + Sbjct: 95 AQEHVESHYQVDPSMFKPQADFLLRVNGESMKNIGIMDGDLLAVHKTQDVHDGQVV-VAR 153 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G + L + N + V++ Sbjct: 154 VDDDVTVKRLERK-GSMVFLHAENEEFAPIQVDL 186 >gi|120613182|ref|YP_972860.1| putative phage repressor [Acidovorax citrulli AAC00-1] gi|120591646|gb|ABM35086.1| putative phage repressor [Acidovorax citrulli AAC00-1] Length = 231 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 44/177 (24%), Gaps = 9/177 (5%) Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 R S +++ I + + R + Sbjct: 49 RAVSDKTVRHIESMRGMHAWFSQPPAPAGTRESSAAYDFDAGPEMYELFPVSLHLRPGIA 108 Query: 111 TGNKW-----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 W + R I + + M P + GDI+++N++ Sbjct: 109 DYAIWPDETDEDAPITFHRQWLERRGYIPQCLLAIRVRGCGMEPSIQAGDIVVVNTSDTT 168 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219 ++ G+++ + + N YP D I R++ Sbjct: 169 LRDGQVFAINGFGEVLLRRAQRD-DGRWWISCDNPDQARYPRKAWAEPDCIPIGRLV 224 >gi|256819705|ref|YP_003140984.1| putative phage repressor [Capnocytophaga ochracea DSM 7271] gi|256581288|gb|ACU92423.1| putative phage repressor [Capnocytophaga ochracea DSM 7271] Length = 244 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 66/229 (28%), Gaps = 18/229 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + + + + LA++ GL + + + + + Sbjct: 16 EINQRFIEVMKYKGYSGYKLAQEIDGLSEAKITHIRSGRNKVSSEILKLIT----NKFPD 71 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT------VGV 120 LL + + EK I + + P N T V Sbjct: 72 INPIWLLTGKETMIKGENTPEKTITSSVPIIANEVINYSEKGVPYYNVDFTNGFMGVVEF 131 Query: 121 PEIRSPHNGIYAIQTQD-TRHKTQDTSMLPLYRKGDILILNS-AIQVNC-GDRLLIKPRT 177 I+ + Y SM + GDI+ + + G+ I Sbjct: 132 ENIKPDYYINYPPANNCDFWINATGRSMENMINHGDIVAVKEVDLSWFPLGEIYAIVTSN 191 Query: 178 GDIVAKVLISRRGRS-IDLMSLNCC---YPVDTVEMSDIEWIARILWAS 222 G + K + R + L+S N YP + I + +++ AS Sbjct: 192 GYRLIKRITESRNKKCFRLVSENPDKDNYPDQDIPKQYITRLFKVIIAS 240 >gi|182418771|ref|ZP_02950040.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237667098|ref|ZP_04527082.1| serine peptidase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377370|gb|EDT74929.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237655446|gb|EEP53002.1| serine peptidase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 563 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 3/78 (3%) Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + SM GD +++N D ++ G+ K +G+ + Sbjct: 472 KDLFILKIKGDSMVKKNINDGDHVLINKNKYPCAND-VVAVEIEGEATLKTF-KTKGKYV 529 Query: 194 DLMSLNCCYPVDTVEMSD 211 L N Y + Sbjct: 530 ILKPENDKYDPIILNGEQ 547 >gi|148257097|ref|YP_001241682.1| putative LexA repressor [Bradyrhizobium sp. BTAi1] gi|146409270|gb|ABQ37776.1| putative LexA repressor [Bradyrhizobium sp. BTAi1] Length = 206 Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 44/212 (20%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I+R E+ T GLAR G+ P + ++ + + K T Sbjct: 7 IERALEKPGKTKGGLARAMGVRPGAVSEI-----------LGGQRLIKAAEIPLIT---- 51 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + +P++ +GS + P V +P + Sbjct: 52 ----------EYLELNSVPIMGRVGAGSVIEPEYEQVPAE-GLGEVALP---------FP 91 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV----NCGDRLLIKPRTGDIVAKVLISR 188 I + + SMLP Y GD++++ + G+ +++ +TG+ K + Sbjct: 92 ISEETIAFEVSGDSMLPKYENGDVIVVYREQRHPLSSFYGEEAVVRLKTGERYLKTIERG 151 Query: 189 RGRSID-LMSLNCCYPVDTVEMSDIEWIARIL 219 + ++ L S N + ++WI I Sbjct: 152 KSSTLVNLKSFNAK----PILGVKLDWIGEIF 179 >gi|160935455|ref|ZP_02082837.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] gi|158441813|gb|EDP19513.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] Length = 184 Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 15/176 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ + LT +A GL ++ +R +E PS S+ K+ + Sbjct: 2 VGEKIRKLRKEKKLTLKDIAEATGLSIGYISQLERGAVE-----PSLSSLRKVSEFLGVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPEIRSP 126 L+D + ++ I + + + + Sbjct: 57 PYLLVDQSEHHPAMVKSDQRPIIKFPKSEIFYEIVSPMSAPEYTPSSMVIQFQIEPGGHD 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 +++ Q + D+++ ++ +N GD L+++P Sbjct: 117 SEEFLTHPSEEIVILLQGEA--------DMVLGETSYHLNAGDSLVVRPNMPHRTI 164 >gi|145301000|ref|YP_001143841.1| transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853772|gb|ABO92093.1| putative transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 180 Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + L+ LA+++G+ ++ ++ + PS S+ K+L Sbjct: 2 DIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQV-----SPSVSSLRKVLEGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ G + ++P L P S + +P Sbjct: 57 SLASFFTEETEMGTEVIFRASDMPDLGTHPISYRLVGHSRANRAIGMMQEI-LPPGADTG 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + + ++ Q T ++ I Q+ GD RT + Sbjct: 116 DDMLSHEGEECGIVIQGTV--------EVTIGEQIHQLAPGDGYYFDSRTPH----RFRN 163 Query: 188 RRGRSIDLMSLN 199 + L+S N Sbjct: 164 VGEQECVLISAN 175 >gi|59713049|ref|YP_205825.1| LexA repressor [Vibrio fischeri ES114] gi|71648705|sp|Q5E209|LEXA_VIBF1 RecName: Full=LexA repressor gi|59481150|gb|AAW86937.1| DNA-binding transcriptional repressor of SOS regulon [Vibrio fischeri ES114] Length = 208 Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 32/214 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTARQQEVFDLIKAKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK----------QVIEIIPGASRGIRILLQDADHHDEELGVPLIGQVAAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 96 AQEHVESHYKVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G + L + N + V++ Sbjct: 155 VDDDVTVKRLERK-GSMVFLHAENEEFSPIEVDL 187 >gi|240126049|ref|ZP_04738935.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae SK-92-679] Length = 59 Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 ++ + G K LI + G S+ + S N YP +T + + I R+ W S Sbjct: 1 DGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLTVIGRVFWWS 56 >gi|261253380|ref|ZP_05945953.1| DNA-binding protein [Vibrio orientalis CIP 102891] gi|260936771|gb|EEX92760.1| DNA-binding protein [Vibrio orientalis CIP 102891] Length = 182 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 58/194 (29%), Gaps = 22/194 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + E+ L+ LA++AG+ ++ + + PS S+ K+L+ + Sbjct: 5 IGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAV-----SPSVASLSKLLSKIPTS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + + +++E P + S G G T + Sbjct: 60 MAEFFAIDDPQPEQFYTRKEEQPEIGQGEISYRQVGHFHGDRHIGMLRET--LKPDADTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + Q+ Q L ++ + ++ GD Sbjct: 118 EEMLTHEGQECGVVVQGQLE---------LTVDLHTVTLHVGDGYYFDSTRPH----RFR 164 Query: 187 SRRGRSIDLMSLNC 200 + ++S N Sbjct: 165 NTAEEECVIISANS 178 >gi|89070253|ref|ZP_01157577.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus HTCC2516] gi|89044173|gb|EAR50331.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus HTCC2516] Length = 187 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/199 (12%), Positives = 61/199 (30%), Gaps = 19/199 (9%) Query: 1 MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M SH + + + + + + L+ LAR+ G+ + ++ + + PS + Sbjct: 1 MAQPSHDQMVAQRLRVVRQSRGLSQRELARRTGVGSGTISQIESMATQ-----PSVAVLK 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 KIL + + G +++E + P + Sbjct: 56 KILDGVPMDLATFFSFELALGDAPVFRKEEHVDIGAPGVAYRLVAAQRPNRALQMLHEFY 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P R + + ++ + + + GD + + +N GD T Sbjct: 116 QP-GRDSGRRPLSHEGEECAIVVAGSLEVTV---GDEVFV-----LNRGDAYYFASSTPH 166 Query: 180 IVAKVLISRRGRSIDLMSL 198 + +++S Sbjct: 167 ----RFRNVGDTVCEVVSA 181 >gi|73853267|ref|YP_308763.1| hypothetical protein LH0099 [Escherichia coli] gi|73476851|gb|AAZ76466.1| hypothetical protein LH0099 [Escherichia coli] Length = 145 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L R +++ +S + + T+ +I + Sbjct: 98 FTVKRLRLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134 >gi|242280484|ref|YP_002992613.1| phage repressor [Desulfovibrio salexigens DSM 2638] gi|242123378|gb|ACS81074.1| putative phage repressor [Desulfovibrio salexigens DSM 2638] Length = 214 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/205 (10%), Positives = 55/205 (26%), Gaps = 24/205 (11%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 P+ +A+ G+ P + + + R + + ++L I D ++ Sbjct: 23 NPTQMAKACGVAPNQIIRYIK-----KERGKHIQVLARVLDEVGARIVFPEDKSPNNDNF 77 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 ++ G W Sbjct: 78 LTPQKALARANRDGEKLKVDSETQGKLAFNLDW------------MAEKGDPDSMKLLTV 125 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 +M P G+ ++++ + + R+ +I+ + + I L+S N Sbjct: 126 TGNAMAPRIEDGNQVLVDESQKDFFEGRIYAVRIDEEILVRRVAREP-GKILLISENQEI 184 Query: 203 P--VDTV----EMSDIEWIARILWA 221 + + I R+++ Sbjct: 185 SPGPIVLESNNPAHNWAPIGRVVFV 209 >gi|154247615|ref|YP_001418573.1| putative phage repressor [Xanthobacter autotrophicus Py2] gi|154161700|gb|ABS68916.1| putative phage repressor [Xanthobacter autotrophicus Py2] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 14/213 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++ G + + G+ G + + IL +E Sbjct: 8 ILDRIADL----GTDLKAVSLALGRNHAYLQQFISRGVPGELGERDRKKLAIILKVNDEH 63 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + ++ G+ +G + + Sbjct: 64 LRSRPVEHIDSMDVASLVDRSKKRKPDQEVRVVGYIGAG--AEVHTVDDHEKGAGLDLVQ 121 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI---QVNCGDRLLIKPRTGDIVAKVL 185 + ++ + SMLP++ GD++ + G ++K G K L Sbjct: 122 VDFPVKHGTVGVIVRGDSMLPMFEDGDLIGYIRDASGPEQLIGKICVVKVVDGPTYIKRL 181 Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 L+S N +E DIEW AR Sbjct: 182 KRGTEPGLYTLVSANA----RDIEDVDIEWAAR 210 >gi|88799578|ref|ZP_01115154.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] gi|88777663|gb|EAR08862.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] Length = 181 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/167 (9%), Positives = 50/167 (29%), Gaps = 14/167 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + ++ ++ LA++ G+ ++ + ++ + PS S+ K+L+ + Sbjct: 2 NVGKRLQEVRKKAGISQRELAKRVGVTNSTISMIEKNNV-----SPSVSSLQKVLSGMSM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 T+ + + +D + + S FP P Sbjct: 57 TLLEFFEAEDNDIYVPQINYTDDDFQDVSSSQVRRRLLGQYFPNRKLEFVSETFPPGAER 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + +L ++ + + G+ Sbjct: 117 RIRLGVESGDKAGMVISGQLVL--------ILGERTVVLEPGNGFYF 155 >gi|312884411|ref|ZP_07744116.1| LexA repressor [Vibrio caribbenthicus ATCC BAA-2122] gi|309367933|gb|EFP95480.1| LexA repressor [Vibrio caribbenthicus ATCC BAA-2122] Length = 206 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 63/215 (29%), Gaps = 34/215 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKCKVDETGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KQAIEIIPGASRGIRILLDTASNDDSGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V+ G + + Sbjct: 94 AQEHVETHYQVDPSMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVHDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K L + G + L + N + V+++ Sbjct: 153 VDDDVTVKRLERQ-GSVVLLHAENQDFEPIKVDLA 186 >gi|269838163|ref|YP_003320391.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787426|gb|ACZ39569.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++I AI R+ + +T LA +AG+ + ++ +R PS + K Sbjct: 1 MQPVQRQRIGPAIRRLRQERGMTLDALAAQAGISASHLSRLERSQT-----LPSFTVLAK 55 Query: 61 ILAATNETICQL 72 I I + Sbjct: 56 IAEVLGVGIDEF 67 >gi|262043812|ref|ZP_06016906.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038840|gb|EEW40017.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 70 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 +++ V GD + + + K LI G+ L LN YP+ + + Sbjct: 1 LVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGK 58 Query: 218 ILWASQ 223 ++ ASQ Sbjct: 59 VI-ASQ 63 >gi|325267675|ref|ZP_08134326.1| prophage MuMc02 protein [Kingella denitrificans ATCC 33394] gi|324980799|gb|EGC16460.1| prophage MuMc02 protein [Kingella denitrificans ATCC 33394] Length = 138 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 6/91 (6%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 +M P + +++ + + + ++ + + I Sbjct: 45 ENCGFFMADGIAMKPTFEGECLILADLSDTILKDGKIYCLEIGAHRWVRRVQVLLD-KII 103 Query: 195 LMSLNCCYPVDTVEMSD---IEWIARI--LW 220 LM+ N Y + D + + R+ +W Sbjct: 104 LMADNPDYADMEISGEDLNRLNVLGRVRGVW 134 >gi|331680936|ref|ZP_08381576.1| protein ImpA [Escherichia coli H299] gi|331081924|gb|EGI53082.1| protein ImpA [Escherichia coli H299] Length = 145 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRGEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134 >gi|319787703|ref|YP_004147178.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466215|gb|ADV27947.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 182 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 40/138 (28%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + R+ L+ LAR+ G+ ++ + ++ + PS S+ K+L Sbjct: 2 DIGARLQRVRTARGLSQRELARRVGVTNSTISLIEQNKV-----SPSVSSLKKVLDGIPI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSP 126 ++ G+ + L + + P V P Sbjct: 57 SLADFFTQDLDPGQPEQPFYTADELPDVGNNDIHYYLVGQHRPQRQMCILREVMPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 GEAMIVHEGEEGGVIVAG 134 >gi|321224644|gb|EFX49707.1| Error-prone repair protein UmuD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 79 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 + GD+L+++S+ + GD ++ G+ K L R ++ L+ +N Y Sbjct: 1 MIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRLQLRP--TVQLIPMNGAYRPI 57 Query: 206 TVEMSD-IEWIARI 218 V D ++ + Sbjct: 58 PVGSEDTLDIFGVV 71 >gi|304314715|ref|YP_003849862.1| hypothetical protein MTBMA_c09540 [Methanothermobacter marburgensis str. Marburg] gi|302588174|gb|ADL58549.1| conserved hypothetical protein [Methanothermobacter marburgensis str. Marburg] Length = 203 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 23/69 (33%) Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM P R G LI+ GD ++ K ++ K + + LMS N Sbjct: 112 VSGDSMYPTLRDGQELIVLKTDDYKVGDIVIAKHPEYGLIVKRVGKIEPTRVYLMSDNKK 171 Query: 202 YPVDTVEMS 210 S Sbjct: 172 VERIYTPTS 180 >gi|258620266|ref|ZP_05715305.1| putative transcriptional regulator [Vibrio mimicus VM573] gi|258587624|gb|EEW12334.1| putative transcriptional regulator [Vibrio mimicus VM573] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 61/227 (26%), Gaps = 26/227 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + + A++ G+ T K + G P ++ +I A + Sbjct: 4 LQERLKFIIGEQ--SLRSFAQEVGVSETMIRKYLKGG------MPGLDNAARICATKGIS 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS--- 125 + ++ + + D G Sbjct: 56 VHWFATGEGDVYFADLDPQERARV--YIQDEETALLDDFALIDGYHVTIEETTRDAHPKV 113 Query: 126 ---------PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + L GD ++++++ D + Sbjct: 114 RRRLAFRKKWLEYRGLQPENLKIFFVKSYIEGALISGGDSVMIDTSDTEVS-DGVFAIEL 172 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220 + V + L +R S+D+ S P + V I+ + R++W Sbjct: 173 LSNTVIRWLKARIDGSVDVYSDIDSEPDENVAPDMLDKIKILGRVVW 219 >gi|300772191|ref|ZP_07082061.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300760494|gb|EFK57320.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 243 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 39/239 (16%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + +T LA G+ + +PST+ +I+ T + Sbjct: 7 YIKSILKERGITIEELANYLGMTRVTL-----GNRLKHEVYPSTDEKVRIIEFLKMTPSE 61 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------SGVFPTGNKWNTVGVPEIRS 125 + L G + E + S G F G + + Sbjct: 62 INSLNAMGGNAFDLGSIEEDQVSELVEISPGRFRMKVELVPMYAQAGYLTDYTDTHFLEE 121 Query: 126 PHNGIY----AIQTQDTRHKTQDTSMLP-----LYRKGDILILN-----------SAIQV 165 + + +T SM G I++ + + Sbjct: 122 LPVHYFTTDRPAKGNYRAFETYGDSMDNGDIKEAIPSGIIVVGRELDRKYWTSKLHSHKW 181 Query: 166 NCGDRLLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219 + T IV K + + + L SLN YP T+ + D++ I ++ Sbjct: 182 PNW---IFVHNTEGIVVKQIADQNLETGDLTLTSLNPDKRKYPDFTINLDDVKQIYNVI 237 >gi|28209943|ref|NP_780887.1| transcriptional regulator [Clostridium tetani E88] gi|28202378|gb|AAO34824.1| predicted transcriptional regulator [Clostridium tetani E88] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 21/220 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I N++ L +K G+ N+ + R + I +I N+ Sbjct: 3 RVGRNIKTYRLEANMSQKQLGKKIGVSENFINEIETG-----KRIINENLIDRIGKILNK 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K EKE + + + N ++ Sbjct: 58 DLNDITMFYED-----MKDEKENKVYDIKENKVQEVWKEAFGSVLRDVNIFDYSLNKTLG 112 Query: 128 NGIYAI---------QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + Q + K +D M K D+++ + ++ + Sbjct: 113 SRRLPVIDNKVNGYPQDKVFYLKVEDNDMNGFRVFKEDLVLCHITGEIQNNSI-YLIEHN 171 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + + + L+S + + VE ++ IAR Sbjct: 172 DKRQIRQIKNLDNSKFLLISNSTMVNTEAVEKKQVKIIAR 211 >gi|225025369|ref|ZP_03714561.1| hypothetical protein EIKCOROL_02267 [Eikenella corrodens ATCC 23834] gi|224941813|gb|EEG23022.1| hypothetical protein EIKCOROL_02267 [Eikenella corrodens ATCC 23834] Length = 138 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 6/91 (6%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 +M P + +++ + + + ++ + + I Sbjct: 45 ENCGFFMADGIAMKPTFEGECLILADLSDTILKDGKIYCLEIGAHRWVRRVQVLLD-KII 103 Query: 195 LMSLNCCYPVDTVEMSD---IEWIARI--LW 220 LM+ N Y + D + + R+ +W Sbjct: 104 LMADNPDYADMEISGEDLNRLNVLGRVRGVW 134 >gi|70732027|ref|YP_261774.1| ultraviolet light resistance protein A [Pseudomonas fluorescens Pf-5] gi|68346326|gb|AAY93932.1| ultraviolet light resistance protein A [Pseudomonas fluorescens Pf-5] Length = 150 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + I A SM GD+ I++ +I+ G ++ Sbjct: 42 DHIEQQISLDQVLNIRA--PHVYLVSISGESMQGAGIFDGDLAIVDRSIEAMHGHIVIAL 99 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D V K + RG+ I L+S N YP V D I ++ Sbjct: 100 LN-NDPVCKRVC-LRGKDIVLLSENPKYPPRYVLEGDELTIWGVV 142 >gi|91775748|ref|YP_545504.1| putative phage repressor [Methylobacillus flagellatus KT] gi|91709735|gb|ABE49663.1| putative phage repressor [Methylobacillus flagellatus KT] Length = 239 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 12/188 (6%), Positives = 49/188 (26%), Gaps = 7/188 (3%) Query: 36 TSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + R ++ + +++ + + + Sbjct: 46 PYIEVASRGRKGRTKKYHPPAELRELINKQYPNGRPAPHRYSTGSGAKAHVANDYAVASS 105 Query: 96 PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 ++ + + + + TS+ P GD Sbjct: 106 RVVRYERPNYRYESLEEYLVESIDFNPASNQLDTPF---QYLKIFTVRGTSLEPSMHDGD 162 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD--- 211 ++++ + + + + + I K + R ++ + + N P + + Sbjct: 163 EVLVDIRCRSFDDNAVFVIGQNDIIRIKRVQLRLDGTVVVRNDNDGDLPPEIYTAEEAKR 222 Query: 212 IEWIARIL 219 + I +++ Sbjct: 223 FKVIGKVI 230 >gi|304399134|ref|ZP_07381002.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB] gi|304353374|gb|EFM17753.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB] Length = 146 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 6/106 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 P + +T + + SM+ GD+L+++ + G ++ Sbjct: 33 AIGYEDTP--LDLNEYCVRAKTATYFVRCEGESMIGAGIFDGDLLVVDKSKAAADGQIVI 90 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K L R L+++N + VE +E + Sbjct: 91 ASVD-GEFTVKKLQLRPVP--MLLAMNPRFKPIPVEPDGLEIWGVV 133 >gi|170078455|ref|YP_001735093.1| LexA repressor [Synechococcus sp. PCC 7002] gi|169886124|gb|ACA99837.1| LexA repressor [Synechococcus sp. PCC 7002] Length = 205 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 47/197 (23%), Gaps = 7/197 (3%) Query: 29 RKAGLDPTSFNKSKRFGIEGRNRWPSTESI--FKILAATNETICQLLDLPFSDGRTTEKK 86 +K + + I+ PS + L + +L L Sbjct: 2 QKLTVAQQELYDWLVYYIQTNQHAPSIRQMMVAMNLRSPAPIQSRLERLRKKKYIDWIDG 61 Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 + + P G G G + + Q K S Sbjct: 62 KARTLKILRPQQQREGLPILGTITAGGLVEPFTDDQSETLILNQVVNQPNCYALKVTGDS 121 Query: 147 M-LPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 M +GD I+ G + + K G+ + L N Y Sbjct: 122 MIEAFITEGDYAIMQKVFDPDRVKNGTIVAARVTGDGTTLKHFYR-EGKKVVLKPANPKY 180 Query: 203 PVDTVEMSDIEWIARIL 219 + +++ ++ Sbjct: 181 DEIKTDALNVDLQGVLV 197 >gi|197336396|ref|YP_002157228.1| LexA repressor [Vibrio fischeri MJ11] gi|226694243|sp|B5FCB2|LEXA_VIBFM RecName: Full=LexA repressor gi|197317886|gb|ACH67333.1| LexA repressor [Vibrio fischeri MJ11] Length = 208 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 32/214 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTARQQEVFDLIKAKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + + + G G G Sbjct: 46 HLKALARK----------QVIEIIPGASRGIRILLQDADDHDEELGVPLIGQVAAGEPIL 95 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 96 AQEHVESHYKVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 154 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + G + L + N + V++ Sbjct: 155 VDDDVTVKRLERK-GSMVFLHAENEEFSPIEVDL 187 >gi|325103718|ref|YP_004273372.1| Peptidase S24/S26A/S26B, conserved region [Pedobacter saltans DSM 12145] gi|324972566|gb|ADY51550.1| Peptidase S24/S26A/S26B, conserved region [Pedobacter saltans DSM 12145] Length = 229 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 14/223 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFN-KSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + + +T ++ G +F+ + K G ++ E+I K N Sbjct: 4 LERIKQFIDSKGITNQKFEKEVGFSNGAFSSQLKNNRTIGVDK---LENILKKYPELNPI 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + + + + + P + Sbjct: 61 WALTGNGDMLNMESLSEDNIVTYGEKDKKREIQNIPLYSITASASILELFSDHNRTIPID 120 Query: 129 GIYA--IQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---I 180 I + D SM PL + GD++ + + + G+ ++ Sbjct: 121 YIRIPNLPKCDGAIYITGDSMYPLLKSGDMVFYKNILNKDNIIWGEMYVLYIDNDGDEYF 180 Query: 181 VAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 K L R + +S N + + I+ +A I+ AS Sbjct: 181 FTKYLQKSERPGYVKCVSQNQHHQPVEFPIGSIKALA-IVKAS 222 >gi|329963276|ref|ZP_08300989.1| bacteriophage CI repressor protein [Bacteroides fluxus YIT 12057] gi|328528815|gb|EGF55759.1| bacteriophage CI repressor protein [Bacteroides fluxus YIT 12057] Length = 240 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 56/211 (26%), Gaps = 21/211 (9%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 T S LA G+ ++ + I K + + Sbjct: 26 TDSELAAFLGISRSTLSNWTARNSIDFP------LILKRFSDIDYNWLLAGKGTPMHQPV 79 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI--------Q 134 E + + T + + YA+ Sbjct: 80 FCNSELAKGEVEIIHNPKTPECIDDRSVTLYDISAAANLKTMLADRPQYALGKILIPNVP 139 Query: 135 TQDTRHKTQDTSMLPLYRKGDIL---ILNSAIQVNCGDRLLIKPRTGD---IVAKVLISR 188 D SM P+ + GDI+ ++S V G+ L+ G + K + Sbjct: 140 QCDGAVYVSGDSMYPILKAGDIVGFKSISSFSDVIYGEMYLVSFERGGDEYLAVKYINRS 199 Query: 189 R-GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S N + + + I +A + Sbjct: 200 EQAGCLKLVSYNTHHDPMDLPLQAINAMAIV 230 >gi|189424042|ref|YP_001951219.1| phage repressor [Geobacter lovleyi SZ] gi|189420301|gb|ACD94699.1| putative phage repressor [Geobacter lovleyi SZ] Length = 284 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 31/235 (13%) Query: 4 FSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR--------NRWPS 54 S +++ I E+ L T LA G+ + K Sbjct: 37 LSTRQVLARIK---EQLGLDTDIELAEAMGIGIRRIHNWKHRNTVPTEEIVAICGKEGLD 93 Query: 55 TESI-----------------FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + I K N Q + + + P Sbjct: 94 LQYILTGPGPLQGGGAMQAGAKKGAVHCNFDPEQANKPRDTYTPSQCGHPRIHPPYKAYT 153 Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 S F + + + P + ++ + K +M P + GD++ Sbjct: 154 QRSEKGEVLSSFSSPQIVDVLA-PGLNWLNHSLGIAPEHFLLVKALGDNMAPWLQDGDLI 212 Query: 158 ILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 +++++ G LL++ G ++ + + + + N C P D ++ +D Sbjct: 213 MVDTSIKTTTAGGCLLLRYPDGVLMVRRVFRSPEGRLMVRDDNECSPPDAIDPND 267 >gi|165924000|ref|ZP_02219832.1| hypothetical protein COXBURSA334_0750 [Coxiella burnetii RSA 334] gi|165916563|gb|EDR35167.1| hypothetical protein COXBURSA334_0750 [Coxiella burnetii RSA 334] Length = 228 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 73/231 (31%), Gaps = 24/231 (10%) Query: 1 MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M +++ A + E L+ A+K+G+ T+ + +G +S+ Sbjct: 1 MKRLKEERLARAKRVQAAREMTKLSRREFAKKSGIANTTLQHWE----DGEKHTLPEKSV 56 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + A + + + +++ + PT Sbjct: 57 RRFIKAL-LNLGVHCSYDWLMHGKGPAPQYAGHVIFQEETTD--------LPTHGARQKN 107 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIK 174 EI+ + D +M P + +G+++ + I+ G ++ Sbjct: 108 EDEEIKEELTLFLSRNKNTVHLVVSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVL 167 Query: 175 PRTGDIVAKVLISRRGRSIDLMSL-NC---CYPVDTVEMSDIEWIARILWA 221 + GD++ + ++ + N + ++ A ++WA Sbjct: 168 VQGGDLLLRTILKGDVEGYYHLGYTNPKTTASKPFLYNI-ELVNAAPVIWA 217 >gi|319408510|emb|CBI82163.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 191 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 37/218 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KIW + + L+ S LAR+ E R ++ K+L Sbjct: 2 KIW--LSEALQESGLSQSSLARQL--------------SEKMQRPIYRSAVNKMLTGERG 45 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSP 126 Q + ++K IPL+ + +GS P + W V +P + Sbjct: 46 ISMQEGIAIEEITKYPLPRKKTIPLMGYVGAGSEVT------PYEDGWLEEVEIPPYIT- 98 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKV 184 K + SM P IL + + N + ++ + G K+ Sbjct: 99 --------KDTYAVKVEGDSMEPFIEDKSILFYSQNMSPNLLLNKKAIVYTQDGRCFVKI 150 Query: 185 L-ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + + +L SLN YP ++ + W A I W Sbjct: 151 VKQGSKPDLFNLESLNRLYP--EIKDIQLVWAAPIDWI 186 >gi|305667801|ref|YP_003864275.1| putative UV protection protein [Escherichia coli] gi|304655550|emb|CBM42208.1| putative UV protection protein [Escherichia coli] Length = 145 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134 >gi|299142200|ref|ZP_07035333.1| conserved hypothetical protein [Prevotella oris C735] gi|298576289|gb|EFI48162.1| conserved hypothetical protein [Prevotella oris C735] Length = 221 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 68/203 (33%), Gaps = 12/203 (5%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 S A+ G+ PT +G+ PS + I KI A N + LL + +T Sbjct: 18 NQSAFAKAVGVTPTVIANVV-GTRQGK---PSFDVISKICANANISADWLLTGKGAMLKT 73 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAIQTQDTRH 140 T+++ + + G + F G +N + + + T Sbjct: 74 TQQEHMIVEPVRSNSPNKGAPYYDVDFLGGFDLTFNDQTINPEYNIDFRPFNKPG-VTWV 132 Query: 141 KTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMS 197 SM P GDI+ L V G+ + T K+L + + + Sbjct: 133 NITGHSMEPKINHGDIIALKECRLEDVQYGEIYAVVLDTI-RTVKILRKAKDPNRMRYVP 191 Query: 198 LN-CCYPVDTVEMSDIEWIARIL 219 +N Y + S I I +L Sbjct: 192 INEENYDEQEYDNSRILRIFEVL 214 >gi|162134183|gb|ABX82523.1| UmuD [Acinetobacter johnsonii] Length = 191 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + + K SML D LI++ +I GD ++ Sbjct: 93 VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 151 Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + K L + L + N + ++ I Sbjct: 152 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVI 191 >gi|239760526|gb|ACS15169.1| hypothetical protein [Campylobacter fetus subsp. venerealis NCTC 10354] gi|299469437|emb|CBH51838.1| hypothetical protein [Campylobacter fetus subsp. fetus] Length = 229 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 64/219 (29%), Gaps = 15/219 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ + LT S K G+ N + + +KI AT I Sbjct: 7 GDKLRKLRNAYGLTQSEFGDKIGISRVRVNSYENNITP-----LPMQVKYKIAEATGINI 61 Query: 70 CQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIR 124 + ++ + ++ + + + D F G + Sbjct: 62 EYFDNDIDLATAISKYGISSENGKLQIKTNKETICTIYDDLYDFANGRYSIDPYLQKVQI 121 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + +P GDIL++ L+ +I+ K Sbjct: 122 LTKLFNLSKPYDYNFVVATNKKAIPFASDGDILVIVKDNIPKDNALLI-LKVNDEILVKY 180 Query: 185 LISRR-GRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 ++I L S N + + + +E++ I+ Sbjct: 181 CRINPFNQNIKLFSTNDDFSNIELSQKELYGVEFLGYIV 219 >gi|307544613|ref|YP_003897092.1| hypothetical protein HELO_2023 [Halomonas elongata DSM 2581] gi|307216637|emb|CBV41907.1| hypothetical protein HELO_2023 [Halomonas elongata DSM 2581] Length = 142 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 3/99 (3%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + + + SM DIL+++ ++ G ++ G+ Sbjct: 37 ERTLDLNERLVKHPAATFFMRVEGHSMQAHSIHHDDILVVDRSVTACFGHIVIALVD-GE 95 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 +V K L R GR+ L S + + V ++ + Sbjct: 96 VVVKRLEQRHGRTF-LCSGHPDHAPIPVNERSLQIWGVV 133 >gi|296453865|ref|YP_003661008.1| putative prophage repressor [Bifidobacterium longum subsp. longum JDM301] gi|296183296|gb|ADH00178.1| putative prophage repressor [Bifidobacterium longum subsp. longum JDM301] Length = 128 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 T + SM+ GD+LI++ ++ GD ++ +I K L+SR G + Sbjct: 13 DTTLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGD-VVAAVMDDEIAIKRLVSRAGIT 71 Query: 193 IDLMSLNCCYPVD 205 I L + N YP Sbjct: 72 I-LHAENPRYPDY 83 >gi|301310297|ref|ZP_07216236.1| UmuD protein [Bacteroides sp. 20_3] gi|300831871|gb|EFK62502.1| UmuD protein [Bacteroides sp. 20_3] Length = 148 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 5/105 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + + + T + SM +GDIL+++ ++++ D + Sbjct: 36 DYMEL--AIDLNKELIKHPTSTFYGRVVGDSMKDEGIEEGDILVIDKSLELMDDDLAVCF 93 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD K + + L+ N YP V + + I+ Sbjct: 94 ID-GDFTVKRV-RLESDAAWLVPSNAKYPPIKVTKDNEFMVWGIV 136 >gi|295402699|ref|ZP_06812642.1| putative phage repressor [Geobacillus thermoglucosidasius C56-YS93] gi|294975271|gb|EFG50906.1| putative phage repressor [Geobacillus thermoglucosidasius C56-YS93] Length = 98 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 10/92 (10%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLISRRGRSI 193 D M P GD I++++++ G + + G I R R + Sbjct: 2 GNLFVLHVTDDQMAPTILAGDTAIVDTSVKPLPNGKDVAVLAVDGKIHVCRFTRRENRIV 61 Query: 194 DLMSLNCCYP---VDTVEMSDIEWIARILWAS 222 Y + +E I +++ S Sbjct: 62 M------AYDNGTTRIIPERQVEVIGKVILVS 87 >gi|218779193|ref|YP_002430511.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760577|gb|ACL03043.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 6/77 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ KKI + I + +NLT + LA GL S ++ +R PS +++ K Sbjct: 1 MSGL-EKKIGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVT-----LPSVKTLAK 54 Query: 61 ILAATNETICQLLDLPF 77 + + ++ Q D Sbjct: 55 VAESLGSSLKQFFDFDE 71 >gi|9507468|ref|NP_052475.1| hypothetical protein ColIb-P9_p029 [Plasmid ColIb-P9] gi|32470183|ref|NP_863407.1| hypothetical protein R64_p052 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|58000288|ref|YP_190180.1| ImpA UV protection protein [Escherichia coli] gi|60115646|ref|YP_209437.1| ImpA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168758407|ref|ZP_02783414.1| protein ImpA [Escherichia coli O157:H7 str. EC4401] gi|168770622|ref|ZP_02795629.1| protein ImpA [Escherichia coli O157:H7 str. EC4486] gi|168770704|ref|ZP_02795711.1| protein ImpA [Escherichia coli O157:H7 str. EC4486] gi|191166311|ref|ZP_03028144.1| protein ImpA [Escherichia coli B7A] gi|193063037|ref|ZP_03044129.1| protein ImpA [Escherichia coli E22] gi|194447054|ref|YP_002039080.1| protein ImpA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194447279|ref|YP_002043875.1| protein ImpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|209921994|ref|YP_002296067.1| ImpA protein [Escherichia coli SE11] gi|218711093|ref|YP_002418713.1| Peptidase S24 impA [Escherichia coli ED1a] gi|226201033|ref|YP_002756645.1| ImpA UV protection protein [Escherichia coli] gi|256367545|ref|YP_003108104.1| UV protection and mutation protein [Escherichia coli] gi|300904889|ref|ZP_07122712.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300939497|ref|ZP_07154158.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] gi|300993848|ref|ZP_07180581.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|301029903|ref|ZP_07192915.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|301307367|ref|ZP_07213372.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|307313339|ref|ZP_07592962.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W] gi|309783588|ref|ZP_07678238.1| ImpA UV protection protein [Shigella dysenteriae 1617] gi|317054706|ref|YP_004119773.1| ImpA [Escherichia coli] gi|331675767|ref|ZP_08376485.1| protein ImpA [Escherichia coli H591] gi|124420|sp|P18641|IMPA_SALTY RecName: Full=Protein impA; Contains: RecName: Full=Protein impA' gi|75381951|sp|Q7BSM9|IMPA_SHIFL RecName: Full=Protein impA; Contains: RecName: Full=Protein impA' gi|75485096|sp|Q5J3U9|IMPA_SALCH RecName: Full=Protein impA; Contains: RecName: Full=Protein impA' gi|115502231|sp|Q7M1C0|IMPA_ECOLX RecName: Full=Protein impA; Contains: RecName: Full=Protein impA' gi|47747|emb|CAA37607.1| unnamed protein product [Salmonella enterica subsp. enterica serovar Typhimurium] gi|4138833|gb|AAD03592.1| ImpA [Shigella flexneri] gi|4512465|dbj|BAA75114.1| impA [Plasmid ColIb-P9] gi|20521551|dbj|BAB91615.1| DNA polymerase V subunit ImpA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|45758204|gb|AAS76416.1| ImpA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|47716802|gb|AAT37579.1| ImpA UV protection protein [Escherichia coli] gi|189354801|gb|EDU73220.1| protein ImpA [Escherichia coli O157:H7 str. EC4401] gi|189360479|gb|EDU78898.1| protein ImpA [Escherichia coli O157:H7 str. EC4486] gi|189360565|gb|EDU78984.1| protein ImpA [Escherichia coli O157:H7 str. EC4486] gi|190903738|gb|EDV63454.1| protein ImpA [Escherichia coli B7A] gi|192931296|gb|EDV83898.1| protein ImpA [Escherichia coli E22] gi|194358498|gb|ACF56942.1| protein ImpA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194405583|gb|ACF65804.1| protein ImpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|209915172|dbj|BAG80245.1| ImpA protein [Escherichia coli SE11] gi|218349876|emb|CAQ87282.1| Peptidase S24 impA [Escherichia coli ED1a] gi|219881662|gb|ACL52032.1| ImpA UV protection protein [Escherichia coli] gi|228480800|gb|ACQ42126.1| UV protection and mutation protein [Escherichia coli] gi|284433234|gb|ADB84973.1| ImpA [Escherichia coli] gi|299877279|gb|EFI85490.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|300305049|gb|EFJ59569.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|300403222|gb|EFJ86760.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300455635|gb|EFK19128.1| peptidase S24-like domain protein [Escherichia coli MS 21-1] gi|300837451|gb|EFK65211.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|306906761|gb|EFN37271.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W] gi|308928484|gb|EFP73941.1| ImpA UV protection protein [Shigella dysenteriae 1617] gi|315063808|gb|ADT78134.1| UV protection and mutation protein [Escherichia coli W] gi|315253192|gb|EFU33160.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] gi|315297100|gb|EFU56380.1| peptidase S24-like domain protein [Escherichia coli MS 16-3] gi|321271697|gb|ADW79784.1| UV protection protein UmuD [Escherichia coli] gi|323184005|gb|EFZ69387.1| protein samA [Escherichia coli 1357] gi|323380947|gb|ADX53214.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli KO11] gi|324015240|gb|EGB84459.1| peptidase S24-like domain protein [Escherichia coli MS 60-1] gi|324016378|gb|EGB85597.1| peptidase S24-like domain protein [Escherichia coli MS 117-3] gi|331076541|gb|EGI47817.1| protein ImpA [Escherichia coli H591] gi|332346557|gb|AEE59889.1| DNA repair protein UmuD [Escherichia coli UMNK88] gi|333011765|gb|EGK31171.1| protein samA [Shigella flexneri K-227] Length = 145 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134 >gi|237745715|ref|ZP_04576195.1| repressor protein [Oxalobacter formigenes HOxBLS] gi|229377066|gb|EEO27157.1| repressor protein [Oxalobacter formigenes HOxBLS] Length = 224 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 16/175 (9%) Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + I + + D P +E + +P+L + G F+ V G Sbjct: 52 RMEDISPSLAKKAKLFSDTPKEPQSPSEDEYFLVPILDVHAACGNGHFNDQVLVEGG--- 108 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 +P++ G+ + + + SM P + G ++++N A + ++ Sbjct: 109 -FALPKVMLHDLGV--PEGEGRIIHAKGNSMAPTIQDGAVVLINLADREPMMSKVYAVCL 165 Query: 177 TGD-IVAKVLISRRGR-----SIDLMSLNCC---YPVDTVEMSDIEWI-ARILWA 221 + +V K L + S + +P + + I R +W Sbjct: 166 PHEGLVLKRLTYEYNEAAGTSVWMMKSDSPDKHQHPDRRLPPDESTIIVGRAVWY 220 >gi|171910449|ref|ZP_02925919.1| SOS-response transcriptional repressor, LexA [Verrucomicrobium spinosum DSM 4136] Length = 202 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 8/112 (7%) Query: 109 FPTGNKWNTVGVPEI---RSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQ 164 P G + + + +++ K + SM +GD +IL Sbjct: 83 IPAGFTADNPEHSDGNLTLDLRTMGLSPRSKPFALKVRGDSMTGAHIIQGDYVILE-QRD 141 Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 D + G+ K + G+ L + N YP + ++ Sbjct: 142 PRPKDIVAALMD-GETTLKRYLVDNGQPF-LRAENPSYPDL-IPARELMIQG 190 >gi|240126045|ref|ZP_04738931.1| Putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae SK-92-679] Length = 59 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222 ++ + G K LI + G S+ + S N YP +T + + I R+ W S Sbjct: 1 DGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWS 56 >gi|321271597|gb|ADW79685.1| UV protection protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky] Length = 145 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R ++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRPVLEPVSDSPEF--RTLYPENICIFGVV 134 >gi|145596662|ref|YP_001160959.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305999|gb|ABP56581.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 191 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 7/139 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R + +T + LA G+ ++ ++ + R PS E + I AA Sbjct: 11 EIGPRLKRARAQRGVTLAELAEATGISKSTLSRLEAGQ-----RKPSLELLLPIAAAHRI 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+D+P + +++ P ++ P+ + Sbjct: 66 PLDKLVDVPQIGDPRVRLQPRKVNGRTVLPLTQHPGSLQAWKVIIPVDQSMPEPKTHEGY 125 Query: 128 NGIYAIQTQDTRHKTQDTS 146 +Y + + Sbjct: 126 EWLYVLAGRLRL--VLGDH 142 >gi|332662749|ref|YP_004445537.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100] gi|332331563|gb|AEE48664.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter hydrossis DSM 1100] Length = 150 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + E + N + + SM DILI++ ++Q D ++ Sbjct: 41 YLEEKLNLDNYLIKNPASTFFIRADGDSMTGAGIYPEDILIVDRSLQAKSKDVIV-AWLD 99 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD K L+ +GR L N + V + + ++ Sbjct: 100 GDFTLKRLVYEQGRC-WLRPENPQFTAIEVIAENDFRVWGVV 140 >gi|205320819|gb|ACI02934.1| RumA [uncultured bacterium HH1107] Length = 168 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 5/105 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + + + + K SM D L+++ +++ D ++ Sbjct: 57 DYID--KTLDMNEHLVKNEAATFVVKVASLSMRDAGIEIDDELLVDRSLEAKHEDIVIAL 114 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 D K L+ G L + N Y + I ++ Sbjct: 115 ID-NDFTVKRLM-VEGDKCWLKAENPDYDDIHLNDCQELLIWGVV 157 >gi|145641694|ref|ZP_01797270.1| hypothetical protein CGSHiR3021_02044 [Haemophilus influenzae R3021] gi|145273508|gb|EDK13378.1| hypothetical protein CGSHiR3021_02044 [Haemophilus influenzae 22.4-21] Length = 85 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR------SIDLMSLNC 200 MLP + +GD+++++ I G + + K R +L+ LN Sbjct: 1 MLPRFNEGDLVLIDPDIVPTPGKFVAAINGDNEATFKQYKELGIRTPEGIPHFELVPLNP 60 Query: 201 CYPVDTVEMSDIEWIA 216 +P + +I I Sbjct: 61 MFPTLSSLDQEIRIIG 76 >gi|293376878|ref|ZP_06623096.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644488|gb|EFF62580.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 330 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H ++ I + +R ++ LA + G+ + + +R + P E + K+ A Sbjct: 3 HHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQ-----PDLEMLMKLAAIF 57 Query: 66 NET 68 Sbjct: 58 ETD 60 >gi|89894953|ref|YP_518440.1| hypothetical protein DSY2207 [Desulfitobacterium hafniense Y51] gi|89334401|dbj|BAE83996.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 252 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 41/231 (17%) Query: 19 RHNLTPSGLARKAG------LDPT--SFNKSKRFGIEG-------------RNRWPSTES 57 R +T + A P+ + K + E + S E+ Sbjct: 30 RGGMTDAEFASALKSFTDGKFSPSANTIQKYRTGQREPSYENLQSILAYGTKTNRISPET 89 Query: 58 IFKILA--ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK- 114 K++ E + Q L +D ++ E+E L + P G+ Sbjct: 90 AEKLMEFFHLGELMSQYAALSNTDNQSFMVAEEESKYLVDKSRDNREIPILNEIPLGSIP 149 Query: 115 ---WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + + P + ++ + D++++ + Sbjct: 150 ATTHDFITFPSTLLSDEEYFLLKGSL----VDGKN----IEGDDLVLVRKTSIAESNQTV 201 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RIL 219 + +G ++ K ++ + N V + ++ I R++ Sbjct: 202 I-AKLSGGVICKKFFKTDDNNVIFLPSNEDSEP--VPLDSVQIIGVVERVI 249 >gi|91206309|ref|YP_538663.1| UV protection and mutation protein [Escherichia coli UTI89] gi|191174393|ref|ZP_03035897.1| protein ImpA [Escherichia coli F11] gi|218692925|ref|YP_002406037.1| UV protection and mutation protein [Escherichia coli UMN026] gi|256855308|ref|YP_003162552.1| DNA repair protein UmuD [Escherichia coli] gi|293404641|ref|ZP_06648634.1| ImpA protein [Escherichia coli FVEC1412] gi|300897127|ref|ZP_07115584.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|91075760|gb|ABE10640.1| UV protection and mutation protein [Escherichia coli UTI89] gi|190905326|gb|EDV64961.1| protein ImpA [Escherichia coli F11] gi|218350088|emb|CAQ87505.1| UV protection and mutation protein [Escherichia coli UMN026] gi|256275520|gb|ACU68793.1| DNA repair protein UmuD [Escherichia coli] gi|281181675|dbj|BAI58004.1| ImpA protein [Escherichia coli SE15] gi|291428353|gb|EFF01379.1| ImpA protein [Escherichia coli FVEC1412] gi|300359069|gb|EFJ74939.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|307629853|gb|ADN74156.1| DNA repair protein UmuD [Escherichia coli UM146] gi|315290862|gb|EFU50231.1| peptidase S24-like domain protein [Escherichia coli MS 153-1] gi|323954217|gb|EGB50005.1| peptidase S24 [Escherichia coli H263] gi|324005329|gb|EGB74548.1| peptidase S24-like domain protein [Escherichia coli MS 57-2] Length = 145 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + +T SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRTSGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGIV 134 >gi|154706811|ref|YP_001424168.1| hypothetical protein CBUD_0775 [Coxiella burnetii Dugway 5J108-111] gi|154356097|gb|ABS77559.1| hypothetical protein CBUD_0775 [Coxiella burnetii Dugway 5J108-111] Length = 228 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 73/231 (31%), Gaps = 24/231 (10%) Query: 1 MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M +++ A + E L+ A+K+G+ T+ + +G +S+ Sbjct: 1 MKRLKEERLARAKRVQAAREMTKLSRREFAKKSGIANTTLQHWE----DGEKHTLPEKSV 56 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + A + + + +++ + PT Sbjct: 57 RRFIKAL-LNLGVHCSYDWLMHGKGPAPQYAGHVIFQEETTD--------LPTHGVRQKN 107 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIK 174 EI+ + D +M P + +G+++ + I+ G ++ Sbjct: 108 EDEEIKEELTLFLSRNKNTVHLVVSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVL 167 Query: 175 PRTGDIVAKVLISRRGRSIDLMSL-NC---CYPVDTVEMSDIEWIARILWA 221 + GD++ + ++ + N + ++ A ++WA Sbjct: 168 VQGGDLLLRTILKGDVEGYYHLGYTNPKTTASKPFLYNI-ELVNAAPVIWA 217 >gi|284007721|emb|CBA73522.1| SOS-response transcriptional repressor [Arsenophonus nasoniae] Length = 199 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 26/206 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + + R+ ++ L+ GL + N KR P+ ++ + N Sbjct: 4 KTIAKNLTRLMNEKHIESQQLSDITGLGIATVNSLKRGVGN-----PTLTTLEVLANFFN 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ +L++ + + N + Sbjct: 59 TSVSELIEKKEKGV--------------LSKVIVEPMPLISLSRIDDYINNQLFEDTFIA 104 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 G Y+ + K + ++ P G I I++ ++V GD L+K + + Sbjct: 105 EIGNYS-SSSLFAIKIDNDTLNPHIPIGTICIVSKEVKVKDGDITLVKINHHTPFFRRVY 163 Query: 187 SRRG----RSIDLMSLNCC-YPVDTV 207 I + S N Y + Sbjct: 164 IESKYLAFSPIMIES-NPTVYENYEL 188 >gi|149190500|ref|ZP_01868770.1| hypothetical protein VSAK1_13631 [Vibrio shilonii AK1] gi|148835624|gb|EDL52591.1| hypothetical protein VSAK1_13631 [Vibrio shilonii AK1] Length = 230 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 62/219 (28%), Gaps = 19/219 (8%) Query: 15 RMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE----SIFKILAATNET 68 + + + + SG+A+KA D K G++R + + Sbjct: 9 ELMDLPGMPSSNSGIAQKAKRD-----GWKSRKTRGQSRALEYHISSFDERDLAELREKY 63 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR--SP 126 +++ ++ + + + + S F N E+ S Sbjct: 64 GTEVIPDNVTEISNVKAIKDFSQVGELCAVPVYNVYASCGFGAQNDAEYQLRTELLPCSR 123 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVL 185 + SM GD ++++ ++ + + + K L Sbjct: 124 LKQYGLNENTARIVICHGDSMEDTLSDGDEVLVDTRELEHPVKHGVYVVRIGKHVYIKRL 183 Query: 186 ISR-RGRSIDLMSLNC-CYPVDTVEMS---DIEWIARIL 219 +++S N Y V + I +++ Sbjct: 184 KYDIMAEGYEVISDNKEEYLPFIVNGEKLQEFAVIGKVV 222 >gi|83816438|ref|YP_444450.1| umuD protein [Salinibacter ruber DSM 13855] gi|83757832|gb|ABC45945.1| umuD protein [Salinibacter ruber DSM 13855] Length = 140 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 5/99 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V + H + + + TSM GDIL+++ A++ GD ++ Sbjct: 30 ASDYVETELDLAEH--LIEHEAATYYLRVSGTSMTRAGIHDGDILVVDRAVEPADGDVVV 87 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L +R GR+ L+ + + V Sbjct: 88 AALDA-ELTVKRLRTRDGRAF-LVPESQHHDPIPVRDGQ 124 >gi|152997972|ref|YP_001342807.1| prophage MuMc02, S24 family peptidase [Marinomonas sp. MWYL1] gi|150838896|gb|ABR72872.1| prophage MuMc02, peptidase, family S24 [Marinomonas sp. MWYL1] Length = 57 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221 + G++ K + + + + S N Y T+ + ++ I R++W+ Sbjct: 1 MINYDGELFVKRVQKQLDGLVAITSDNKNYQPMTIPLEGLSKLKIIGRVVWS 52 >gi|226326319|ref|ZP_03801837.1| hypothetical protein PROPEN_00167 [Proteus penneri ATCC 35198] gi|225205270|gb|EEG87624.1| hypothetical protein PROPEN_00167 [Proteus penneri ATCC 35198] Length = 81 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVD 205 M P+ G + +++ + + K+L + G + + S N +P + Sbjct: 1 MSPVIPNGSTVTVDTGNTRIVDGGIYAIEQDALFRIKLLYRQPGGKLIIRSYNKDEFPDE 60 Query: 206 TVEMSDIEWIARILWAS 222 + E S ++ + RI+ S Sbjct: 61 SAETSSVKIMGRIIHWS 77 >gi|331001323|ref|ZP_08324948.1| conserved domain protein [Parasutterella excrementihominis YIT 11859] gi|329568825|gb|EGG50624.1| conserved domain protein [Parasutterella excrementihominis YIT 11859] Length = 231 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 9/210 (4%) Query: 11 EAIDRM-AERHNLTPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + ERH L+ ++ G+ + ++ + + K Sbjct: 5 ERLKLLWNERHKLSQREFGKRYGIGSGAMVSQYLLGKAP-----LNLAVVVKFAKGLGCK 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + ++ ++ ++ S + S + + ++ Sbjct: 60 LEEISPSLALLAQSANALSSKVSETEGGGSQTKLPILSDDYLLSHTTIPENQRSEKNSIT 119 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + D SM P + GD+L+ S G +L + + K Sbjct: 120 SSLVLTEGAFAWALLDQSMAPEFFSGDLLLFESKELPQPGCFVLAEYDGKILFRKYTEQA 179 Query: 189 RGRSID--LMSLNCCYPVDTVEMSDIEWIA 216 I L LN YP + +IE + Sbjct: 180 IDNKIIINLKPLNPDYPTISNSTKEIEILG 209 >gi|161831045|ref|YP_001596928.1| hypothetical protein COXBURSA331_A1189 [Coxiella burnetii RSA 331] gi|161762912|gb|ABX78554.1| hypothetical protein COXBURSA331_A1189 [Coxiella burnetii RSA 331] Length = 228 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 62/231 (26%), Gaps = 24/231 (10%) Query: 1 MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M +++ A + E L+ A+K+G+ T+ + S Sbjct: 1 MKRLKEERLARAKRVQAAREMTKLSRREFAKKSGIANTTLQHWEDGEKHTLPEK-SVRRF 59 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K L + PT Sbjct: 60 IKALLNLGVHSSYDWLMHGKGPAPQYAGHVIFQEETT------------DLPTHGARQKN 107 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIK 174 EI+ + D +M P + +G+++ + I+ G ++ Sbjct: 108 EDEEIKEELTLFLSRNKNTVHLVVSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVL 167 Query: 175 PRTGDIVAKVLISRRGRSIDLMSL-NC---CYPVDTVEMSDIEWIARILWA 221 + GD++ + ++ + N + ++ A ++WA Sbjct: 168 VQGGDLLLRTILKGDVEGYYHLGYTNPKTTASKPFLYNI-ELVNAAPVIWA 217 >gi|163798141|ref|ZP_02192077.1| SOS-response transcriptional repressor [alpha proteobacterium BAL199] gi|159176584|gb|EDP61162.1| SOS-response transcriptional repressor [alpha proteobacterium BAL199] Length = 147 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 3/86 (3%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + Q SM GD+LI++ AI D ++ G++ K L + Sbjct: 54 PAATFFVRAQGESMRDAGLFDGDLLIVDRAITPQVSDIVIAAVN-GELTVKRLKKL-QGT 111 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARI 218 L + N + + + E + Sbjct: 112 WALSAENPEFSDIHLGDAGCEVWGVV 137 >gi|119640088|gb|ABL85463.1| ImpA [Escherichia coli] Length = 146 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 40 EQELDLNSYCISRPAATFFLRASGKSMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 98 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I I Sbjct: 99 FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVI 135 >gi|330825351|ref|YP_004388654.1| putative phage repressor [Alicycliphilus denitrificans K601] gi|329310723|gb|AEB85138.1| putative phage repressor [Alicycliphilus denitrificans K601] Length = 188 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 51/174 (29%), Gaps = 27/174 (15%) Query: 31 AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90 AG+ + +R+ P ES ++ + +++ + R + Sbjct: 13 AGITQRAAQSVRRWFDAREPGLPDLESFARLCIGLGCSADEII---GALHREGHDPARCA 69 Query: 91 PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 ++ + G I + M P Sbjct: 70 HMVQMANC-------------------IRAITDSLTRRGELGIP-----VRVPGDEMAPR 105 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 + GDI+ + +AI G+ + R ++ + + R +SI L N Y Sbjct: 106 LKAGDIVFVKTAITRIEGNGIYAFTRDDGLLIRRVEQRIDKSIVLQCDNKAYRD 159 >gi|23455722|ref|NP_695031.1| Repressor [Lactococcus phage r1t] gi|1353520|gb|AAB18678.1| Repressor protein [Lactococcus phage r1t] Length = 278 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/269 (10%), Positives = 68/269 (25%), Gaps = 58/269 (21%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------------------- 48 ++ E ID + + T K G ++ +K + Sbjct: 5 RLPEMIDYFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDKMVNLFNTDPETL 64 Query: 49 ----RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE--------------- 89 + + I KI + E +++ ++ + +EK+ Sbjct: 65 MYGASDLSTTLSEINKISSQLEEPRQKVVLNTANNQLDEQNQEKKKESKVIPINKIPDDL 124 Query: 90 ----------------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-A 132 + Y G G + V + P + + Sbjct: 125 PPYISRKILENFVMPTNTMEYEADEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLS 184 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191 SM P G +++ + V+ G ++ K + Sbjct: 185 SARDYYWLMVDGHSMEPKIPYGAYVLIEAVPDVSDGTIGAVLFHDDCQATLKKVYHEID- 243 Query: 192 SIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + L+S+N + + I + + Sbjct: 244 CLRLVSINKEFKDQFATQDNPAAVIGQAV 272 >gi|323493806|ref|ZP_08098924.1| putative phage repressor [Vibrio brasiliensis LMG 20546] gi|323311940|gb|EGA65086.1| putative phage repressor [Vibrio brasiliensis LMG 20546] Length = 236 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 47/203 (23%), Gaps = 26/203 (12%) Query: 39 NKSKRFGIEGRNRWPST-------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 N + G R + +I+ + L D + Sbjct: 30 NNWLKRKAIGHARAVEYHISNFHPDIQKQIIERFVTDKTEQKKLLEKDWSLPPSNAHGLK 89 Query: 92 LLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 L + G +P G+ + Sbjct: 90 PLNEFEEWAKLPVYDVHAAAGAGTLVQSEFQIGVFSLPIELLHEYGL--KPDFSSVIFVD 147 Query: 144 DTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLN 199 SM P D L+++ V G + + + K L ++S N Sbjct: 148 GDSMEPTLSHRDRLLVDIREQQHPVVNG--VYVIRIDDAVYVKRLHWDIENGVYKVISDN 205 Query: 200 CCYPVDTVEM---SDIEWIARIL 219 YP + + + I + + Sbjct: 206 LKYPAFNINHKNGRNFKIIGKAV 228 >gi|325479315|gb|EGC82411.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 177 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I R+ + T LA K G+ T ++ + + PS E++ KI T+ Sbjct: 4 ENIKRLRKEKGFTQKDLAVKVGVSITFISQIENGISK-----PSDENLKKIADVLGVTVN 58 Query: 71 Q 71 + Sbjct: 59 E 59 >gi|294506195|ref|YP_003570253.1| umuD protein [Salinibacter ruber M8] gi|294342523|emb|CBH23301.1| umuD protein [Salinibacter ruber M8] Length = 194 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 5/99 (5%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + V + H + + + TSM GDIL+++ A++ GD ++ Sbjct: 84 ASDYVETELDLAEH--LIEHEAATYYLRVSGTSMTRAGIHDGDILVVDRAVEPADGDVVV 141 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ K L +R GR+ L+ + + V Sbjct: 142 AALDA-ELTVKRLRTRDGRAF-LVPESQHHDPIPVRDGQ 178 >gi|163814618|ref|ZP_02206007.1| hypothetical protein COPEUT_00769 [Coprococcus eutactus ATCC 27759] gi|158450253|gb|EDP27248.1| hypothetical protein COPEUT_00769 [Coprococcus eutactus ATCC 27759] Length = 252 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 41/226 (18%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + +T S LA G+ + + G+ + P + + I A Sbjct: 11 DIGYRLKDVMAEKGVTISQLADMTGISEDTI----KAIRSGKTKSPGIQLMISIADALGC 66 Query: 68 TICQLLDLPFSDGRT------------------------TEKKEKEIPLLYFPPSGSGGF 103 T+ L + ++++P S Sbjct: 67 TMDGFLHRQSLTHEELYLLSKFRTLNIHGKNMVMLMADSEDHMQRQLPGRNSTASTRKIP 126 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 S + + Y T D + + P+Y K D+L + Sbjct: 127 CISSTHTLASNTDYSTHATEFIDMPADYF-PTADYCLRLTTNMLHPIYMKDDLLAVEKDF 185 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRG-----------RSIDLMSL 198 GD + G + + R G +SI L S Sbjct: 186 -PRLGDIAVFLNEDGVEMIRKYTERDGSPYLEAVSRCDKSIYLTSD 230 >gi|312792894|ref|YP_004025817.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312878073|ref|ZP_07738009.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|311795152|gb|EFR11545.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|312180034|gb|ADQ40204.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 285 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 5/80 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E LT LA GL S + + G R P ++ KI T+ Sbjct: 5 RLKELREEKGLTQEELALMLGLKRQSISNYENGG-----RQPDYNTLIKIADFFGVTVDY 59 Query: 72 LLDLPFSDGRTTEKKEKEIP 91 L+ R E K + Sbjct: 60 LVGHSDFRTREEEFKGRNFY 79 >gi|237716927|ref|ZP_04547408.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405696|ref|ZP_06082246.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643378|ref|ZP_06721197.1| bacteriophage CI repressor protein [Bacteroides ovatus SD CC 2a] gi|294810638|ref|ZP_06769288.1| bacteriophage CI repressor protein [Bacteroides xylanisolvens SD CC 1b] gi|229442910|gb|EEO48701.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356571|gb|EEZ05661.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641256|gb|EFF59455.1| bacteriophage CI repressor protein [Bacteroides ovatus SD CC 2a] gi|294442180|gb|EFG10997.1| bacteriophage CI repressor protein [Bacteroides xylanisolvens SD CC 1b] Length = 237 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 55/209 (26%), Gaps = 20/209 (9%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA G+ + + RN + K + L Sbjct: 24 SELAEYLGVSRATVSNW-----GARNSIDFRLLLDKFGDKVDYNWLLLGKGNPKHQPRHC 78 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------ 138 + E + + T + + YA+ Sbjct: 79 ESELVQGEVEIIHNPKIPEPIDDRSVTLYDITAAANLKTLFTNKKQYALGKILIPNISVC 138 Query: 139 --RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRR- 189 SM P+ + GDI+ ++S V G+ L+ + K + Sbjct: 139 DGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSFMIDGDEYLAVKYVNRSEQ 198 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S N + + + I +A + Sbjct: 199 EGHLKLVSYNTHHEPMDIPFASINAMAIV 227 >gi|77461744|ref|YP_351251.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385747|gb|ABA77260.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1] Length = 182 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + + T+ K L+ P+ + P Sbjct: 57 SMVEFFSEEILQEKPTQIVYKANELIDISDGAVTMKLVGRAHPSRAIAFLNEIYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLTHEGEETGILVEG 134 >gi|289676789|ref|ZP_06497679.1| peptidase [Pseudomonas syringae pv. syringae FF5] Length = 175 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 18/177 (10%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I AI L +A + G+ ++ + + E+++ + Sbjct: 1 MTRQERIARAIAT----SGLKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121 AT L + L P S + G+ V P Sbjct: 53 RATGFRAEWLAIGEGPEQAPAFD---ANVALIDQPKMSFRYPVISWVSAGSWEEAVQPYP 109 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL 172 + S I Y + + + SM +G ++++++ V G ++ Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVI 166 >gi|146342189|ref|YP_001207237.1| putative LexA repressor [Bradyrhizobium sp. ORS278] gi|146194995|emb|CAL79020.1| putative LexA repressor [Bradyrhizobium sp. ORS278] Length = 208 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 44/212 (20%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I+R E+ T GLAR G+ P + ++ + + K T Sbjct: 7 IERALEKPGKTKGGLARAMGVRPGAVSEI-----------LGGQRLIKAAEIPLITEYLE 55 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L+ GR E P V +P + Sbjct: 56 LNSVPIMGRVGAGSVIEPDYEQVPL---------------EGIGEVALP---------FP 91 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV----NCGDRLLIKPRTGDIVAKVLIS- 187 I + + SMLP Y GD++++ + G+ +++ ++G+ K + Sbjct: 92 IFEETIAFEVTGDSMLPKYENGDVIVVYKEQRHPLSSYYGEEAVVRLKSGERYLKTIERG 151 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + ++L S N ++WI I Sbjct: 152 KSPSVVNLKSFNA--KPIV--GVKLDWIGEIF 179 >gi|160884906|ref|ZP_02065909.1| hypothetical protein BACOVA_02896 [Bacteroides ovatus ATCC 8483] gi|156109941|gb|EDO11686.1| hypothetical protein BACOVA_02896 [Bacteroides ovatus ATCC 8483] Length = 237 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 54/209 (25%), Gaps = 20/209 (9%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA G+ + + RN + K + L Sbjct: 24 SELAEYLGVSRATVSNW-----GARNSIDFRLLLDKFGDKVDYNWLLLGKGNPKHQPRHC 78 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------ 138 + E + + + + YA+ Sbjct: 79 ESELVKGEVEIIHNPKTAEPTDDRSVMLYDITAAANLKTLFTNKQQYALGKILIPNISVC 138 Query: 139 --RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRR- 189 SM P+ + GDI+ ++S V G+ L+ + K + Sbjct: 139 DGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSFMIDGDEYLAVKYVNRSEQ 198 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S N + + + I +A + Sbjct: 199 EGHLKLVSYNTHHEPMDIPFASINAMAIV 227 >gi|330812572|ref|YP_004357034.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380680|gb|AEA72030.1| putative transcription regulator, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 182 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + + T+ K L+ P+ + P Sbjct: 57 SMVEFFSEEILQEKPTQIVYKANELIDISDGAVTMKLVGRAHPSRAIAFLNEIYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLTHEGEETGILVEG 134 >gi|149187671|ref|ZP_01865968.1| transcriptional regulator, XRE family with cupin sensor protein [Vibrio shilonii AK1] gi|148838551|gb|EDL55491.1| transcriptional regulator, XRE family with cupin sensor protein [Vibrio shilonii AK1] Length = 182 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 16/167 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + ER L+ LA++AG+ ++ + + PS S+ K+L+ Sbjct: 4 EIGPRFKALRERAGLSQRELAKRAGVTNGFISQIESNAV-----SPSVASLSKLLSKIPS 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF--PPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ + + ++++ P + G + G T + Sbjct: 59 SMAEFFAVDEPKPDQFFSRKQQQPEIGRGKISYRQIGHYHDDRQ-IGMLRET--LSPGAD 115 Query: 126 PHNGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVN 166 + + A + Q+ Q S + + +GD +S Sbjct: 116 TGDEMLAHEGQECGVIVQGELELTVDSEVVVLHEGDSYYFDSTRTHR 162 >gi|15678595|ref|NP_275710.1| hypothetical protein MTH567 [Methanothermobacter thermautotrophicus str. Delta H] gi|2621644|gb|AAB85073.1| unknown [Methanothermobacter thermautotrophicus str. Delta H] Length = 206 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%) Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM P + G LI+ + GD ++ + ++ K + + LMS N Sbjct: 115 VSGDSMYPTLKDGQDLIVLKTDRYTVGDIVIARHPEYGLIVKRVGKIEPERVYLMSDNKK 174 Query: 202 YPVDTVEMS 210 S Sbjct: 175 VERIYTPTS 183 >gi|162134167|gb|ABX82514.1| UmuD [Acinetobacter genomosp. 14] gi|162134171|gb|ABX82516.1| UmuD [Acinetobacter junii] gi|162134173|gb|ABX82517.1| UmuD [Acinetobacter genomosp. 9] gi|270266209|gb|ACZ65037.1| UmuD [Acinetobacter genomosp. 16BJ] gi|270266211|gb|ACZ65038.1| UmuD [Acinetobacter berezinae] gi|270266213|gb|ACZ65039.1| UmuD [Acinetobacter genomosp. 6] Length = 167 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 V + + + + K SML D LI++ +I GD ++ Sbjct: 69 VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 127 Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + K L + L + N + ++ I Sbjct: 128 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVI 167 >gi|254419340|ref|ZP_05033064.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185517|gb|EDX80493.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 256 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 22/235 (9%) Query: 2 TSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 T+ + ++ + EA+ R+ +R L+ A +A + ++ + ++ ++ Sbjct: 8 TTLTEQQSLGEALKRLRQRAGLSQEQAAERAEIVEITWRRYEKGVRGVTLDKLIGLAMAI 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + Q S T + E Y PP G G GN Sbjct: 68 GFDRDALLMEQAAVAGGSVAPPTARGHLERMAAYTPPPGDAGLVIRDRVQAGNWLEADDT 127 Query: 121 PEIRSP----HNGIYAIQTQDTRHKTQDTSMLP-LYRKGDIL----ILNSAIQVNCGDRL 171 + + S+ +GD++ + D + Sbjct: 128 GQSTYRTYPAVRDARYPHADQWLSEVMGDSVNRLNIFEGDMVHLVDCIAIGYHPRTDDVV 187 Query: 172 -LIKPRTG----DIVAKVLISRRGR-SIDLMSLNCCY-PVDTV-----EMSDIEW 214 + + R G ++ K + + + S N + + + +IE Sbjct: 188 EVERLRNGGAERELTIKQIELVQDGLLLWPRSTNTRWSQPLELRDGAGDGEEIEV 242 >gi|55822086|ref|YP_140527.1| transcriptional regulator , truncated [Streptococcus thermophilus CNRZ1066] gi|55738071|gb|AAV61712.1| transcriptional regulator, putative, truncated [Streptococcus thermophilus CNRZ1066] Length = 92 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 2/85 (2%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 D SM P Y G + ++ G + K + + Sbjct: 2 AHDFASWVSGDSMEPKYHNGSVALIRETGFDYDG-AVYAVVCNSQTYIKRVY-LEAEGLR 59 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L+S+N Y + + + RI+ Sbjct: 60 LVSINPKYKDIFISYDEDPRVVRII 84 >gi|114328137|ref|YP_745294.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] gi|114316311|gb|ABI62371.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] Length = 258 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 62/221 (28%), Gaps = 20/221 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ + + L++++G+ + N+ + ++ + ++ Sbjct: 40 QRLRQIMKEFGGN-NLLSKESGIPVGNLNRYIAG------QEMKVSALVALAETCGVSVE 92 Query: 71 QLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 L T E ++ P + R Sbjct: 93 WLATGRGRKKVTPEGSIAADLGHKDIINLPYFDKEVASKYAYLNDHQEIVPKSYLFERQF 152 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + +M P K D L++++ V D + I K + Sbjct: 153 VESCFKGVNGLVIFNVLADNMTPTIYKEDNLVIDTNESVVY-DGVYAVVMNEIINVKRIK 211 Query: 187 SRRGRSIDLMSLNCCY--PVDTV------EMSDIEWIARIL 219 S++ + L S N Y + + S+ R++ Sbjct: 212 SKQNNNFILSSDNALYSSSDIEIKNIGYDKNSECFIFGRVV 252 >gi|222529019|ref|YP_002572901.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455866|gb|ACM60128.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 321 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 6/123 (4%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I+ + + E NLT + LA K G+ + + + R P +++ KI Sbjct: 41 DLIEENIFAMRLKELREEANLTQNELAEKLGIGRATLSNYELGV-----RKPDIDTLQKI 95 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 N + LL + R + +EI F ++ Sbjct: 96 ANYFNVSSDYLLGMTPIKKRDSLNSIEEIIKEKKVKELKNFFKHEENVKAYFEYIVSLFE 155 Query: 122 EIR 124 + Sbjct: 156 PLL 158 >gi|238854543|ref|ZP_04644880.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3] gi|282932361|ref|ZP_06337794.1| DNA-binding protein [Lactobacillus jensenii 208-1] gi|238832836|gb|EEQ25136.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3] gi|281303518|gb|EFA95687.1| DNA-binding protein [Lactobacillus jensenii 208-1] Length = 213 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I E ++ + ++ +TP LA K G+ T+ N +R + PS +++ + A Sbjct: 16 RERIKENLNELLKKRGMTPKELAEKTGIAYTTINNYRRVYAQ--PSLPSKKNLLAMAKAL 73 Query: 66 NETICQLLDLP 76 N ++ Sbjct: 74 NCEPDEIDPSY 84 >gi|91223886|ref|ZP_01259150.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269966489|ref|ZP_06180573.1| putative transcriptional regulator [Vibrio alginolyticus 40B] gi|91191378|gb|EAS77643.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269828946|gb|EEZ83196.1| putative transcriptional regulator [Vibrio alginolyticus 40B] Length = 185 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 5/92 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++I + I ++ ++H L+ LA +AG+ ++ + + + PS S+ KI+ Sbjct: 1 MDNQEIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKV-----SPSVSSLQKIVN 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + ++ + + K L+ Sbjct: 56 VFSLSLSEFFTFEQPSNDEVKVVIKPSDLVEI 87 >gi|283954211|ref|ZP_06371735.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 414] gi|283794229|gb|EFC32974.1| phage repressor protein, putative [Campylobacter jejuni subsp. jejuni 414] Length = 77 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 M PL + G I I++ + + K ++ + + L SLN Y Sbjct: 1 MEPLIKDGSICIVDRNKTFKDKSICV-INTRDGLFIKQVLKQDDG-VMLHSLNPLYKDIF 58 Query: 207 VEMSDIEWIARIL 219 + D I ++ Sbjct: 59 YKNGDFLLIGVVI 71 >gi|189464654|ref|ZP_03013439.1| hypothetical protein BACINT_00997 [Bacteroides intestinalis DSM 17393] gi|189436928|gb|EDV05913.1| hypothetical protein BACINT_00997 [Bacteroides intestinalis DSM 17393] Length = 240 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 58/208 (27%), Gaps = 19/208 (9%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 + LA G+ ++ + + K+ + P + Sbjct: 28 AALAAYLGVSRSTLSNWCARNSIDFP-----LLLEKLKDVDYNWLLVGKGTPVHQTKICN 82 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA-------IQTQD 137 + + + D+ + + + + + I D Sbjct: 83 SGIVQGEVEMIHNPKAVEALDNRSISLYDITAAANLKTLLANKDQHVVGRIQIPNIPACD 142 Query: 138 TRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL---LIKPRTGDIVAKVLISRR-G 190 SM P+ + GD++ +NS V G+ + K + Sbjct: 143 GALYISGDSMYPILKSGDVVGFKEVNSFSSVIYGEMYLVSFCIDGDEYLSVKYVNRSDVE 202 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 I L+S N + + ++ I+ +A + Sbjct: 203 GCIKLVSYNPHHEPMDIPLASIQAMAIV 230 >gi|116494736|ref|YP_806470.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239631670|ref|ZP_04674701.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066285|ref|YP_003788308.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116104886|gb|ABJ70028.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526135|gb|EEQ65136.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438692|gb|ADK18458.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 5/103 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ ++ L+ + LA G+ + +K + E P + I K+ + Sbjct: 3 GERLTQLRKQKGLSQNDLAEAIGISRQAISKYENGLAE-----PDLDKIAKLRDILGVSY 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 LL T+ + + G + G Sbjct: 58 ADLLGKEPKQQITSNNVSSASITITSLINDRLGSYTGFQVAEG 100 >gi|73490241|dbj|BAE19798.1| hypothetical protein [Pseudomonas fluorescens] Length = 198 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 47/138 (34%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 18 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 72 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + T+ K L+ P+ + P Sbjct: 73 SMVEFFSEEILQENPTQIVYKANELIDISDGAVTMKLVGKAHPSRAIAFLNEIYPPGADT 132 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + + ++T + Sbjct: 133 GDEMLTHEGEETGILVEG 150 >gi|30248335|ref|NP_840405.1| hypothetical protein NE0318 [Nitrosomonas europaea ATCC 19718] gi|30138221|emb|CAD84229.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 265 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%) Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Q M P + GD +++++A D + + + K Sbjct: 158 DWRRYAGLNPEHIKIIDVQGDGMKPTLQHGDQVLVDTACNRFVDDAIYAIRQGDMLRIKR 217 Query: 185 LISRRGRSIDLMSLNC 200 + R SI++ S N Sbjct: 218 IRLRLDGSIEIRSDNS 233 >gi|117927775|ref|YP_872326.1| putative phage repressor [Acidothermus cellulolyticus 11B] gi|117648238|gb|ABK52340.1| putative phage repressor [Acidothermus cellulolyticus 11B] Length = 138 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 T+ + I S + + + SMLP GD L++ +++ GD ++ + Sbjct: 2 TLPLALIASLRTAPVGWRNRWRAVVVEGASMLPTLHSGDCLLVVRTSRLHPGDMVVARHP 61 Query: 177 --TGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDI---EWIARIL 219 G +V K L L+S N P D+ + + + R++ Sbjct: 62 REPGRLVVKRLAWETETGWWLVSDNPQAPGAADSFHFGAVPSADIVGRVV 111 >gi|152973532|ref|YP_001338583.1| umuDC operon protein-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330001990|ref|ZP_08304141.1| peptidase S24-like protein [Klebsiella sp. MS 92-3] gi|150958324|gb|ABR80353.1| umuDC operon protein-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328537509|gb|EGF63739.1| peptidase S24-like protein [Klebsiella sp. MS 92-3] Length = 141 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 FP+ + + + SM + Sbjct: 12 IVKIPLFTERCPAGFPSPASD---YTESELDLNEYCIHRRHSTYFVRAIGNSMTDIGLYS 68 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 GD+L+++ A Q GD ++ G+ K L+ L ++N +P + ++ Sbjct: 69 GDLLVVDKAEQPRHGDIVI-AEIEGEFTVKRLLLTP--RPALQAMNPDFPSLYPDPETLQ 125 Query: 214 WIARI 218 + Sbjct: 126 IFGVV 130 >gi|323492807|ref|ZP_08097949.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] gi|323312878|gb|EGA66000.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] Length = 185 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 40/90 (44%), Gaps = 5/90 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++++I + I ++ ++H L+ LA +AG+ ++ + + + PS S+ KI+ Sbjct: 1 MNNQEIGKNIVQLRKQHGLSQRELAERAGITHSAISSIENGKV-----SPSVSSLQKIVN 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + ++ + + E L+ Sbjct: 56 VFSLSLSEFFTFEKPQSDEVKVVMTEDELV 85 >gi|271961986|ref|YP_003336182.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505161|gb|ACZ83439.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 189 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I R+ E ++ S LAR+AG+ + + + R P+ E+++ + A Sbjct: 24 DVGQRIRRLREERGISLSELARRAGVGKATLSGLENGT-----RNPTLETLWAVTAQLG 77 >gi|229593332|ref|YP_002875451.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|312963834|ref|ZP_07778305.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|229365198|emb|CAY53478.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|311281869|gb|EFQ60479.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 182 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + T+ K L+ P+ + P Sbjct: 57 SMVEFFSEEILQEIPTQIVYKANELIDISDGAVTMKLVGRAHPSRAIAFLNEIYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLTHEGEETGILVEG 134 >gi|218780466|ref|YP_002431784.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761850|gb|ACL04316.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ KKI + I + +NLT + LA GL S ++ +R +PS +++ + Sbjct: 1 MSGL-EKKIGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVT-----FPSVKTLAR 54 Query: 61 ILAATNETICQLLDLPF 77 + A ++ Q D Sbjct: 55 VAEALGSSLKQFFDFDE 71 >gi|156345367|ref|XP_001621343.1| hypothetical protein NEMVEDRAFT_v1g145237 [Nematostella vectensis] gi|156207159|gb|EDO29243.1| predicted protein [Nematostella vectensis] Length = 72 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM+ GD+L+++ ++ GD ++ + GD K +R + Sbjct: 5 PQCTFLLRVRGDSMIGAGIFDGDLLVVDKYLRPQHGDIVVAEVD-GDFTCKRFWARYDQ- 62 Query: 193 IDLMSLNCCY 202 + L + N Y Sbjct: 63 VMLRAENPTY 72 >gi|168239703|ref|ZP_02664761.1| protein SamA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733785|ref|YP_002112883.1| protein SamA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|313116750|ref|YP_004032900.1| LexA-like protein [Edwardsiella tarda] gi|194709287|gb|ACF88510.1| protein SamA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287633|gb|EDY27025.1| protein SamA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|312192387|gb|ADQ43873.1| LexA-like protein [Edwardsiella tarda] Length = 141 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 95 FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 FP+ + + + SM + Sbjct: 12 IVKIPLFTERCPAGFPSPAAN---YTESELDLNEYCIHRRHSTYFVRAIGNSMTDIGLYS 68 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 GD+++++ A Q GD ++ G+ K L+ L ++N +P + ++ Sbjct: 69 GDLMVVDKAEQPRHGDIVI-AEIEGEFTVKRLLLTP--RPALQAMNPDFPSLYPDPETLQ 125 Query: 214 WIARI 218 + Sbjct: 126 IFGVV 130 >gi|254487954|ref|ZP_05101159.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214044823|gb|EEB85461.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 183 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 35/140 (25%), Gaps = 7/140 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + E L+ LA KAGL + + ++ PS S+ +L A Sbjct: 2 DIGHRLRTIREERGLSQRELAAKAGLTNGTISLIEKNKT-----SPSVASLKSLLDAIPI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125 ++ + + + P S + P Sbjct: 57 SMAEFFSPLEDAETPKVFYRQSEFIEISPSSEGQVSLRQLGNAEQHSLQVLHETYPPGAD 116 Query: 126 PHNGIYAIQTQDTRHKTQDT 145 + ++ Sbjct: 117 TGPELLVHDGEEAGVVISGE 136 >gi|15615472|ref|NP_243775.1| hypothetical protein BH2909 [Bacillus halodurans C-125] gi|10175531|dbj|BAB06628.1| BH2909 [Bacillus halodurans C-125] Length = 189 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 27/181 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S K+I + + R+ +T LA+K G+ + +R P+ +++KI Sbjct: 5 MLS-KRIGQRLKRIRSDRGMTLDQLAKKTGVSKPMLGQIERGESN-----PTVSTLWKIA 58 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + + V P + + P Sbjct: 59 TGLHVSF--------------------TAFIEDEKPNVTVIKRDQVLPIIDGCDFQVFPL 98 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIV 181 + + I + T TS + +I+ + V GD + + R I Sbjct: 99 FPRSKDKPFEIFSVKLEAGTDHTSEGHAQGVHEFVIVEKGTLNVKIGDEVYVLERGDGIH 158 Query: 182 A 182 Sbjct: 159 F 159 >gi|325276799|ref|ZP_08142502.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp. TJI-51] gi|324098071|gb|EGB96214.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp. TJI-51] Length = 101 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 K + SM GD+LI++ + G +++ GD K ++ R R + Sbjct: 8 NVYLVKVEGDSMQGAGIYTGDLLIVDRLAEPTSGSIIIVAQN-GDATCKRMVIR-DRQVV 65 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L+S N +P + D + ++ Sbjct: 66 LISDNPKFPSRDIMEGDQFEVWGVV 90 >gi|149191757|ref|ZP_01869996.1| LexA repressor [Vibrio shilonii AK1] gi|148834399|gb|EDL51397.1| LexA repressor [Vibrio shilonii AK1] Length = 206 Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 61/214 (28%), Gaps = 34/214 (15%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +A++ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIDDVGMPPTRAEIAKELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KKAIEIIPGASRGIRILLEDAANEDAGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G + + Sbjct: 94 AQEHVEAHYQVDPSMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 D+ K L + ++ L + N + V++ Sbjct: 153 VDDDVTVKRLERKGA-TVLLHAENEEFSPIEVDL 185 >gi|119471364|ref|ZP_01613836.1| transcriptional repressor for SOS response [Alteromonadales bacterium TW-7] gi|119445640|gb|EAW26924.1| transcriptional repressor for SOS response [Alteromonadales bacterium TW-7] Length = 205 Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 61/215 (28%), Gaps = 35/215 (16%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +I E I + + P + +A+ G + + E Sbjct: 1 MRPLTKRQAQILELIKVFIKDTGMPPTRAEIAQTLGFKSAN----------------AAE 44 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K LA + + I L+ G G G+ Sbjct: 45 EHLKALAKKGVIKMKPG------------ASRGIQLVEEEEPEQLGLPLIGRVAAGSPIL 92 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + + D + SM + GD+L ++ G + + Sbjct: 93 AQEHVESHCKIDPLMFKPAADFLLRVNGMSMKDIGIMDGDLLAVHKTQVAENGQVV-VAR 151 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 D+ K + + GR + L + N + V++ Sbjct: 152 VDDDVTVKRI-EKAGRQVLLHAENDEFAPIKVDLE 185 >gi|13095808|ref|NP_076698.1| repressor [Lactococcus phage bIL309] gi|15672420|ref|NP_266594.1| prophage pi1 protein 03 [Lactococcus lactis subsp. lactis Il1403] gi|12723316|gb|AAK04536.1|AE006281_2 prophage pi1 protein 03, transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|12830997|gb|AAK08351.1|AF323670_3 repressor [Lactococcus phage bIL309] Length = 278 Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 30/269 (11%), Positives = 68/269 (25%), Gaps = 58/269 (21%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------------------- 48 ++ E ID + + T K G ++ +K + Sbjct: 5 RLPEMIDYFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDKMVNLFNTDPDTL 64 Query: 49 ----RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE--------------- 89 + + I KI + E +++ ++ + +EK+ Sbjct: 65 MYGASDLSTTLSEINKISSQLEEPRQKVVLNTATNQLDEQNQEKKKESKVIPINKIPDDL 124 Query: 90 ----------------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-A 132 + Y P G G + V + P + + Sbjct: 125 PPYISRKILENFVMPTNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLS 184 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191 SM P G +++ + V G ++ K + Sbjct: 185 SARDYYWLMVDGHSMEPKIPFGSYVLIEAVPDVTDGTIGAVLFQDDCQATLKKVYHEID- 243 Query: 192 SIDLMSLNCCYPVDTVEMSD-IEWIARIL 219 + L+S+N + + I + + Sbjct: 244 CLRLVSINKEFKDQFATQDNPAAVIGQAV 272 >gi|294813544|ref|ZP_06772187.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|326442049|ref|ZP_08216783.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326143|gb|EFG07786.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 5/137 (3%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + ++ + R+ +T + LA G+ ++ ++ + G R PS E + I Sbjct: 36 RTLNEVGPRLKRLRAERGITLAALAETTGISKSTLSRLESGG-----RRPSLELLLPISQ 90 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + +L+ P + I P P Sbjct: 91 AYQVPLDELVGAPEVGDPRVRLTPRTIHGSTVVPLTRQPGPLQAFKMVVPVSRATPEPVT 150 Query: 124 RSPHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 151 HEGYEWLYVLAGRLRLV 167 >gi|269119864|ref|YP_003308041.1| phage repressor [Sebaldella termitidis ATCC 33386] gi|268613742|gb|ACZ08110.1| putative phage repressor [Sebaldella termitidis ATCC 33386] Length = 226 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 68/222 (30%), Gaps = 16/222 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLA---RKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 +++ + I E L +A ++ G+ + + R GR + + Sbjct: 1 MDKIERVTKKIRSRREELGLRLEDVANSLKRQGV-EITISGLHRIESGGRQK-LDANLLV 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + +L + +++ +L + G Sbjct: 59 GLSNILDYNFFDMLGWKAPKENSNYSIKEKEKILVKIHTYDSS-------KAGRIDLENF 111 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPR 176 E + I + K + M P + +GD+L++ N ++++ Sbjct: 112 TEEALMVEDEISNSVNEGIIIKIKGNFMQPHFYEGDVLLIEKEKFENWQELDRKIVLYEF 171 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ + ++ + + N Y + I +I R+ Sbjct: 172 DGETYIRKVLFENAKGYLIAFNNRLYENIEIN-EKITYIGRV 212 >gi|312965280|ref|ZP_07779513.1| repressor protein C2 [Escherichia coli 2362-75] gi|312289954|gb|EFR17841.1| repressor protein C2 [Escherichia coli 2362-75] Length = 120 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 11/95 (11%) Query: 133 IQTQDTRHKTQDTSM-----LPLYRKGDILILNSA---IQVNCGDRLLIKPRTG-DIVAK 183 + + + SM P +G I+I+ + G ++ G + K Sbjct: 21 VSEMAFALRVRGDSMTNPLGSPSIPEGSIVIVEPDIIDTECINGKIVVAHINGGQEATLK 80 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+ LN Y + + + Sbjct: 81 KFVEDWPNRY-LVPLNPNYKTIEC-GENCRIVGLV 113 >gi|148550378|ref|YP_001270480.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148514436|gb|ABQ81296.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 199 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 19 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 73 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 ++ + + T+ K L+ Sbjct: 74 SMVEFFSVELEPQSPTQIVYKAHELIDISDG 104 >gi|295697906|ref|YP_003602563.1| SOS mutagenesis and repair protein UmuD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295060018|gb|ADF64755.1| SOS mutagenesis and repair protein UmuD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295097799|emb|CBK86889.1| SOS response UmuD protein. Serine peptidase. MEROPS family S24 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 143 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 6/104 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + V H+ + + SM GD+L+++SA + GD ++ Sbjct: 34 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMSDGSLYNGDLLVVDSAEKPRHGDIVV-A 90 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K + L +N +P + D++ + Sbjct: 91 SVQGEFTVK--RLLLTPRLTLQPMNAAWPPIYPDPDDLDIFGVV 132 >gi|153952785|ref|YP_001393550.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853450|ref|YP_002470572.1| hypothetical protein CKR_0107 [Clostridium kluyveri NBRC 12016] gi|146345666|gb|EDK32202.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567174|dbj|BAH05158.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 224 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 18/221 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I ++ L +K G+ N+ + S I K+ + Sbjct: 3 RVGEKIKSARIELGISQKLLGKKLGVSEKFINEVELGRKIA-----SQGIIDKLSKILGK 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-----------FPTGNKWN 116 I + EK EK P+ + + N Sbjct: 58 NINDITMSFEEQAYEEEKNEKFSPVPKKEKIQVQDVWSEAFSSVLKKIPIYGYDINKIIN 117 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 +P I + G YA + + GD+ + + ++ + Sbjct: 118 FKQLPIINNKVEG-YAQDKVIYLQIESNDMEGFRIQDGDLALAHITGEIENNSIC-LVEY 175 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 G + + + + L+S +T+E+ D++ IA+ Sbjct: 176 GGKREVRQIKKMDNKKVLLISGKNSIRTETIEIKDLKIIAK 216 >gi|223038457|ref|ZP_03608751.1| conserved hypothetical protein [Campylobacter rectus RM3267] gi|222880314|gb|EEF15401.1| conserved hypothetical protein [Campylobacter rectus RM3267] Length = 148 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 4/57 (7%) Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218 + G + + +++ K R L+S N Y +E IE + R+ Sbjct: 84 QKAIEGAIYVCRYD-NELLVKRFKKRP--HFALISDNRDYEPIKIEEDLSIEILGRV 137 >gi|120537133|ref|YP_957190.1| putative prophage repressor [Marinobacter aquaeolei VT8] gi|120326968|gb|ABM21275.1| UmuD protein. Serine peptidase. MEROPS family S24 [Marinobacter aquaeolei VT8] Length = 142 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + S + + +SM GD+L+++ ++ ++ Sbjct: 34 DYIE--KTLSLDDLCIRTPAATYFVRASGSSMERAGIHDGDVLVVDRSLPPGHRKIVIAS 91 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G+ V K L L + + YP T+ E ++E + Sbjct: 92 VD-GEFVCKRLDLSVPSRPVLRAESEDYPDITLREEDELEIFGVV 135 >gi|325272717|ref|ZP_08139070.1| DNA replication and repair protein [Pseudomonas sp. TJI-51] gi|324102163|gb|EGB99656.1| DNA replication and repair protein [Pseudomonas sp. TJI-51] Length = 142 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 10/109 (9%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + P I A + + SM G +L+++ +I G + + Sbjct: 33 DYYEAPLSLDERMNIRA--PHVWIVQVEGDSMRDAGIFDGSLLVVDRSISPTAGHIV-LA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILW 220 + K L + L S N Y ++ S+ IE + W Sbjct: 90 YVDNQPLVKRLARSAAGWV-LESANPAYK--SIAPSEYGTIEVFGVVTW 135 >gi|302342128|ref|YP_003806657.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638741|gb|ADK84063.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 432 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 16/127 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + L+ + LA+ G+ P++ ++ + I +PS ++ K+ Sbjct: 252 DLGKRIKELRGKKGLSQTDLAKMVGVTPSTISQVESNHI-----YPSLPALIKMAEVL-- 304 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + E + P G + P Sbjct: 305 ---------SVEIASFFNDGAEDRQRVVFSAEEAVEVKLVDMPAGAVRAQLLSPVDLDSK 355 Query: 128 NGIYAIQ 134 Y I+ Sbjct: 356 TEPYIIE 362 >gi|149919002|ref|ZP_01907487.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149820155|gb|EDM79574.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +++ E + + +R LT LA A + S + + PS +++ K Sbjct: 1 MEVMTREELGERLRTLRKRRGLTQEALAEAAEVSVDSVRRLENAAF-----SPSFDTLTK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + N L+ + + + +P + + + Sbjct: 56 LAKGLNVPKVALITDHYDEEDDLAVMLRALPSPHKEVAVAM 96 >gi|26991944|ref|NP_747369.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24987072|gb|AAN70833.1|AE016728_2 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313501243|gb|ADR62609.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 182 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 ++ + + T+ K L+ Sbjct: 57 SMVEFFSVELEPQSPTQIVYKAHELIDISDG 87 >gi|237808604|ref|YP_002893044.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] gi|237500865|gb|ACQ93458.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] Length = 214 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 58/220 (26%), Gaps = 31/220 (14%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + LT LA G+ + ++ + P +++ ++ Sbjct: 2 RRKMFGLTMQALADYVGVSQPTVSQWESDLT-----LPKGQNMRRLEEILRTNSDW---- 52 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 + + + + S P + ++ A ++ Sbjct: 53 --LTWGEGDPDARYVLVRPSTDEFKVIDSFSRQLPVITIAQALTWCDLSPDEQNKAASKS 110 Query: 136 QD---------TRHKTQDTSML-----PLYRKGDILILNSAIQVNCGD---RLLIKPRTG 178 + SM+ + G L++ + N + ++ Sbjct: 111 NIVSIATSKGGFILIMPNDSMVGPNNPRSLQAGCQLVVEPEFKPNELNEKVVVVAVEDAP 170 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + I + G + L S N YP + + I + Sbjct: 171 VAMVREFI-QDGPLVFLRSFNPSYP--ILNAVNFRVIGVV 207 >gi|104784313|ref|YP_610811.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95113300|emb|CAK18028.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 182 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + + + T+ K L+ P + P Sbjct: 57 SMVEFFSVELAPESPTQIVYKAHELIDISDGAVTMKLVGKSHPNRAIAFLNEVYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + ++T + Sbjct: 117 GEEMLTHDGEETGILLEG 134 >gi|282879409|ref|ZP_06288150.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281298453|gb|EFA90881.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 241 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 30/235 (12%) Query: 10 WEAIDRMAER------HNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 E +DR+ + + T +A K G T+ + + G+ R+ + + + Sbjct: 1 MERVDRLQKAFEYLRYKGIANTQVDVANKMGRQRTNVSSAFN----GKERYLTDSFLKEF 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLY---------FPPSGSGGFFDSGVFPTG 112 L + E E+ + G Sbjct: 57 CDTFGVFSFDWLLTGEGNMLKDEPHVSEVTEVKSLSNLKSKEVKKDEQMVNLYDFEASAG 116 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCG 168 + I + D SM PL + GDI++ + G Sbjct: 117 LRSLLDNNHANVIDSIRIPNLPKCDGAIHIVGDSMYPLLKSGDIVLYKEMPVDMQHLFYG 176 Query: 169 DRL---LIKPRTGDIVAKVLISRRGRS--IDLMSLNCCYPVDTVEMSDIEWIARI 218 + + +V K + + L+S N + ++ + +A + Sbjct: 177 EMYLISYLIEGDAYVVVKYINRSPQGEPYVTLVSQNPHHADRDIDFRTVNALALV 231 >gi|145218938|ref|YP_001129647.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205102|gb|ABP36145.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 210 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 18/154 (11%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++++I I + ++ L+ LAR+ L T+ K + E R R + K Sbjct: 1 MTNEQIGLRIKELRSQNGLSQEELARRVELPRTAVTKIESGSQELRFRE-----LEKFAE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + EK S F D+ T Sbjct: 56 ALG-------------TPISALVEKPHESPASVMCMSSTFMDNSFMMTSESSEEYKASNT 102 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 R ++ +Q + D + D L Sbjct: 103 RLRTMLLFILQRTAGNPEMDDRRIADTILTADRL 136 >gi|330964277|gb|EGH64537.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 182 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + + K L+ + + + T P Sbjct: 57 SMVEFFSEETVPENSAQVVYKASELIDISDGAMTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLVHEGEETGILVEG 134 >gi|153954474|ref|YP_001395239.1| phage transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347355|gb|EDK33891.1| Predicted phage transcriptional regulator [Clostridium kluyveri DSM 555] Length = 268 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I R+ + LT LA+ + PT+ + R PS +++ KI Sbjct: 2 NIGENIKRIRTQKGLTQKELAKSIHVTPTTIQNYENN-----RRKPSVDTLDKIAKVLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 TI + K + + Sbjct: 57 TINSFTFNYNFCYELLMRLIKVLNTENY 84 >gi|224143138|ref|XP_002335997.1| predicted protein [Populus trichocarpa] gi|222837887|gb|EEE76252.1| predicted protein [Populus trichocarpa] Length = 194 Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 14/185 (7%) Query: 47 EGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK-------KEKEIPLLYFPPSG 99 + R+R + + K+ A P + + + L + P+ Sbjct: 2 KSRHRPIKEDFVEKLEALPGYAGWFTAPSPDTPAPVSMPASDRDDIPPGYVRLQHLSPTP 61 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 S G P + V E + SMLP R D++ + Sbjct: 62 SMGPGRGMSEPV-QIIRHLDVLESWVRQKVGSTNYDRIKILTGIGQSMLPTIRDHDLVFV 120 Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN----CCYPVDTVE--MSDIE 213 + + + + ++ K + ++ L S N + I Sbjct: 121 DMGQKSIDVPGIYVLDVCDRLLLKRALIHSTGTLVLRSDNAEEFPDEERIDLRTAADSIN 180 Query: 214 WIARI 218 R+ Sbjct: 181 VAGRV 185 >gi|217970467|ref|YP_002355701.1| peptidase S24 and S26 domain protein [Thauera sp. MZ1T] gi|217507794|gb|ACK54805.1| peptidase S24 and S26 domain protein [Thauera sp. MZ1T] Length = 151 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 9/96 (9%) Query: 128 NGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + SM +GD+L+++ +I+ G ++ G+ + K L Sbjct: 52 EYLVRNPISTFFFTVKGDSMQEADIFEGDVLVVDRSIKPVHGHLVVAFVN-GERLVKRL- 109 Query: 187 SRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARILWA 221 S R S+ L++ + YP T+ E +D+E +W Sbjct: 110 SIRVGSVMLLAGHPKYPPLTLKERNDLE-----VWV 140 >gi|33240210|ref|NP_875152.1| family S24 peptidase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237737|gb|AAP99804.1| UmuD ortholog, peptidase family S24 [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 143 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 V + + + + + SM GD+LI++ ++ G+ ++ Sbjct: 33 YVEDNIDLNEELIHRPASTFFLRVKGDSMSNAGILDGDLLIVDRSLDAKPGNIVVAILD- 91 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 G K L R+ L + N YP+ + Sbjct: 92 GAFTLKKLTYRKNIPY-LEAANHNYPIIDLRR 122 >gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] gi|260938714|gb|EEX94702.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] Length = 185 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++I + I + + H L+ LA +AG+ ++ + + + PS S+ KI+ Sbjct: 1 MDNQEIGKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKV-----SPSVSSLQKIVN 55 Query: 64 ATNETICQLLDLPFSDGRT 82 + ++ + Sbjct: 56 VFSLSLSEFFTFEQPQSEE 74 >gi|330866552|gb|EGH01261.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330895723|gb|EGH28013.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943309|gb|EGH45692.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330952098|gb|EGH52358.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] gi|330972181|gb|EGH72247.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 182 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 57 SMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLVHEGEETGILVEG 134 >gi|289674441|ref|ZP_06495331.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 182 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 57 SMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLVHEGEETGILVEG 134 >gi|302531671|ref|ZP_07284013.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] gi|302440566|gb|EFL12382.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] Length = 193 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 5/133 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I + R + ++ + L+R G+ ++ ++ + R PS E + I AA Sbjct: 12 EQIAPRLRRARDHRGVSLAELSRSTGISTSTLSRLESGQ-----RKPSLELLLPITAALG 66 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +++ P ++ + P + P Sbjct: 67 IPFDEIVAAPRIVDPRVPQQAAKRDGRVLIPLSRHQGELRAYKQIIPAGDVEPHPRSHDG 126 Query: 127 HNGIYAIQTQDTR 139 H +Y ++ + Sbjct: 127 HEWLYVLRGRLRV 139 >gi|66043508|ref|YP_233349.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63254215|gb|AAY35311.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 199 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 74 SMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 134 GEEMLVHEGEETGILVEG 151 >gi|325273200|ref|ZP_08139486.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101665|gb|EGB99225.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 182 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 ++ + + + K L+ Sbjct: 57 SMVEFFSVELEAQSPAQIVYKAHELIDISDG 87 >gi|170718802|ref|YP_001783983.1| phage repressor [Haemophilus somnus 2336] gi|168826931|gb|ACA32302.1| putative phage repressor [Haemophilus somnus 2336] Length = 81 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 M P + G+ +I++ + + ++ + G ++ K + ++L+S N Y Sbjct: 1 MYPTLKDGEEIIVDRSKRNLVDGKIFVLNNDGSMLVKKVQ-LTYDGVELISDNPTYRPLK 59 Query: 207 VEMSD---IEWIARIL 219 +E + + I +++ Sbjct: 60 LEAEEANSLIVIGQVV 75 >gi|167036306|ref|YP_001671537.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166862794|gb|ABZ01202.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 182 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 ++ + + T+ K L+ Sbjct: 57 SMVEFFSVELEPESPTQIVYKAHELIDISDG 87 >gi|294778750|ref|ZP_06744169.1| peptidase S24-like protein [Bacteroides vulgatus PC510] gi|294447406|gb|EFG15987.1| peptidase S24-like protein [Bacteroides vulgatus PC510] Length = 224 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 13/215 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ +T +A G++ T+ + + R S I + Sbjct: 4 LRQIIRNQGVTNKVIADALGIESTNIGRY----DDLSKRRLSELIIISKALDMSLGDLVQ 59 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + K V + I Sbjct: 60 QAMADEIELGDVTIINKPKYIERIDEEGIINLYDIEAAANLKSLLVNKDQNILGKISIPN 119 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRL-LIKPRTGD--IVAKVL 185 I D + SM PL + GDI+ + G+ + G+ + K + Sbjct: 120 IPKCDGAVYVKGDSMYPLLKSGDIIAYKEVPVEIQHIFYGEMYLVSIDVEGEEYLTVKYI 179 Query: 186 --ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + G I L+S N + ++ ++ +A + Sbjct: 180 NQSEKGGDWIKLVSYNQHHQPKDFPLASVKALALV 214 >gi|221199771|ref|ZP_03572814.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] gi|221208624|ref|ZP_03581624.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221171435|gb|EEE03882.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221180010|gb|EEE12414.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] Length = 189 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 61/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 10 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + R+ + E+P L + P Sbjct: 65 SLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGAGVKDRNMCIMREIYQP-HADTG 123 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + A + L + G +L+ GD + R + Sbjct: 124 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 171 Query: 188 RRGRSI-DLMSLNC 200 I +++S N Sbjct: 172 PSADQICEVVSANS 185 >gi|238020422|ref|ZP_04600848.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC 51147] gi|237867402|gb|EEP68408.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC 51147] Length = 198 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 28/205 (13%) Query: 16 MAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 ++ NLT LA G S + + + P+ + + KI N + Sbjct: 12 ARKQANLTQEELAEAIGFSGKGSVSAIENGRNK-----PTFDIMVKISEVCNYPLPYQNQ 66 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 + ++ + + + + + + + Sbjct: 67 VINNNATHIQVGGNNFGEVSYSNITENN----------HAFINLDNITQQDFIKP----- 111 Query: 135 TQDTRHKTQ-DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 K + K D+L +N I N G+ +L+ G + L Sbjct: 112 ---FIVKVPNNDLHSEGIFKDDMLTINPNITANHGNFVLVLSTYGRGLIAKLFIDLKNQY 168 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARI 218 L N P + D I + Sbjct: 169 ALK-HNESNP--ELMPDDARIIGVV 190 >gi|209916853|ref|YP_002291173.1| UV protection protein ImpA [Escherichia coli SE11] gi|209915279|dbj|BAG80351.1| UV protection protein ImpA [Escherichia coli SE11] Length = 145 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRSAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134 >gi|330957317|gb|EGH57577.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 182 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 47/138 (34%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + + K L+ + + + T P Sbjct: 57 SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLVHEGEETGILVEG 134 >gi|91780754|ref|YP_555961.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91693414|gb|ABE36611.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 204 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 14/128 (10%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH + + + L+ + LA +AG+ + ++ +R R E + + L Sbjct: 13 DLSHGDVGARLRALRVAQGLSVNELAMRAGVSVGTVSQVERNKANPSVRI--LERLRQAL 70 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLY------------FPPSGSGGFFDSGVFP 110 + + D ++ L+ P + P Sbjct: 71 EVPLTALLEEDDAVSDPITGDFVRKAAERPLFEVGKNGMQKELLSPHGDHDLQMMIIMLP 130 Query: 111 TGNKWNTV 118 G+ V Sbjct: 131 AGSGSEEV 138 >gi|237797760|ref|ZP_04586221.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020610|gb|EGI00667.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 182 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/192 (10%), Positives = 58/192 (30%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 57 SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + ++T + L ++ + + GD + Sbjct: 117 GEEMLVHEGEETGILVEGRLEL--------VVGHDTYVLEAGDSYYFESTRPH----RFR 164 Query: 187 SRRGRSIDLMSL 198 + + L+S Sbjct: 165 NPFDVAARLISA 176 >gi|291287634|ref|YP_003504450.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884794|gb|ADD68494.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 191 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 63/216 (29%), Gaps = 33/216 (15%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +KKI + + + + +++ + RK G + S + + + P + I I Sbjct: 1 MQYKKIADRLKELRKALDMSQTDFGRKIGKNYHSVMRWELGRV-----LPPSNVIVHICE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + L ++ E + +++ +P+ Sbjct: 56 SFDVSPDWLKSGKGKMFLNSDPYIAEAETAPYDFQQEKISLQP---------DSIFMPDG 106 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + P + DI++ N A V GD + + Sbjct: 107 AAAMKAA--------------SGSTPPVSENDIIVYNPACDV-DGDGMYLIEDNYGDCYV 151 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + R S YP + + +++ Sbjct: 152 RFYKKADRLF--HSKRPDYPDVDYSQAKVT--GKVI 183 >gi|289624831|ref|ZP_06457785.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647732|ref|ZP_06479075.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 199 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 74 SMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 134 GEEMLVHEGEETGILVEG 151 >gi|295085879|emb|CBK67402.1| Peptidase S24-like./Bacteriophage CI repressor helix-turn-helix domain. [Bacteroides xylanisolvens XB1A] Length = 237 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 56/209 (26%), Gaps = 20/209 (9%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA G+ + + RN + K + L Sbjct: 24 SELAEYLGVSRATVSNW-----GARNSIDFRLLLDKFGDKVDYNWLLLGKGNPKHQPRYC 78 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------ 138 + E + + T + + YA+ Sbjct: 79 ESELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANLKTLFTNKKQYALGKILIPNISVC 138 Query: 139 --RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLIS-RR 189 SM P+ + GDI+ ++S V G+ L+ + K + + Sbjct: 139 DGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSFMIDGDEYLAVKYVNRSDK 198 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S N + + + I +A + Sbjct: 199 EGYLKLVSYNTHHEPMDIPFASINAMAIV 227 >gi|117617483|ref|YP_854772.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558890|gb|ABK35838.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 180 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + L+ LA+++G+ ++ ++ + PS S+ K+L Sbjct: 2 DIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQV-----SPSVASLRKVLEGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + ++P L P S + +P Sbjct: 57 SLATFFTDETEMDSEVIFRAADMPDLGTHPISYRLVGHSRANRAIGMMQEI-LPPGADTG 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + + ++ Q + + + +L GD RT + Sbjct: 116 DDMLSHEGEECGIVIQGQVEVTVGEQVYLLT--------PGDGYYFDSRTPH----RFRN 163 Query: 188 RRGRSIDLMSLN 199 L+S N Sbjct: 164 VDEHECVLISAN 175 >gi|302184902|ref|ZP_07261575.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 182 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 57 SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLVHEGEETGILVEG 134 >gi|291548981|emb|CBL25243.1| Predicted transcriptional regulator [Ruminococcus torques L2-14] gi|295110023|emb|CBL23976.1| Predicted transcriptional regulator [Ruminococcus obeum A2-162] Length = 211 Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA K G++ S +K +R +P+ +++ KI+ T Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65 Query: 69 ICQLLDLPFSDGRTTEKKE-KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +LL + EK+ + + + + F + +W + Sbjct: 66 PNELLSGEWKYVNQAEKEVCQFLRIEERLNAELKHGHYDNFFDSEEEWLEYEL 118 >gi|255524012|ref|ZP_05390974.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296186870|ref|ZP_06855271.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255512299|gb|EET88577.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296048584|gb|EFG88017.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 222 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 8/215 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + +T L +K G++ + N+ + + I K+L Sbjct: 3 RVGEKIKNIRNSIGMTQKQLGKKLGVNESFVNEVENGRKI--INQNLIDRISKVLGKDIN 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPE-I 123 I + + +K + F ++ V + Sbjct: 61 DITMSFEEQVFEEEKDKKYSAAPKKEAVKDVWNEAFGSVLKNIPIYGYDLQKAVSFKQLP 120 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + Q + + +D ML KGD+ S ++ + V Sbjct: 121 LINNKVEGHSQDKVFYLQIEDDDMLGFRIAKGDLAFAYSTHEIENNSIC-LIEHGSKRVI 179 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + + + L+S + +T E+ +I IA+ Sbjct: 180 RQIKRLDNNKVLLISNKGSFRTETAEIKEINIIAK 214 >gi|330876473|gb|EGH10622.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 182 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + + K L+ + + + T P Sbjct: 57 SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLVHEGEETGILVEG 134 >gi|218779224|ref|YP_002430542.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760608|gb|ACL03074.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 433 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 50/166 (30%), Gaps = 11/166 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I ++ + L+ +A+ G+ ++ ++ + P + +IL + Sbjct: 253 DLGTRIKQLRVKKGLSQVQMAKMVGVTASTISQVEN--NSIYPSIPGLLKMAEILNVSPG 310 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSP 126 + S + + L + + GN + + ++ Sbjct: 311 YLFSSDFEKRSQIVFPSGQASAVTLANLSEYEGSVKMLTPLDFEGNAEPFMIEIEPEQTV 370 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 +A + Q+ + + GD + + GD + Sbjct: 371 SGHFFAHRGQEMGYVARG---ALEISFGDEI-----HKAKSGDLVY 408 >gi|218529001|ref|YP_002419817.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218521304|gb|ACK81889.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 228 Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 41/167 (24%), Gaps = 1/167 (0%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S I + + + LA A + T+ +K + + P + Sbjct: 1 MVSTTSIGSTVRDARIKRGWSQQQLAEAARVSQTTVDKIENGITKKSRFLPEIFKALGLD 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + + + ++ + F + + + Sbjct: 61 LADVVLHGGSEESSLRSLDPSRNRMRKRSVRAFSQKSDLIKVFFPQYVDNKGVFNIDFSK 120 Query: 123 -IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + P I + P GDI +S + V G Sbjct: 121 WDKVPRPRILDNDRDACAICVTHHYLAPELEIGDIAFFHSQLPVQVG 167 >gi|221215602|ref|ZP_03588565.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] gi|221164590|gb|EED97073.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] Length = 189 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 10 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + R+ + E+P L V P Sbjct: 65 SLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGAGVKDRNMCIMREVYQP-HADTG 123 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + A + L + G +L+ GD + R + Sbjct: 124 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 171 Query: 188 RRGRSI-DLMSLNC 200 I +++S N Sbjct: 172 PSADQICEVVSANS 185 >gi|161526154|ref|YP_001581166.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189349130|ref|YP_001944758.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343583|gb|ABX16669.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189333152|dbj|BAG42222.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 183 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + R+ + E+P L V P Sbjct: 59 SLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGAGVKDRNMCIMREVYQP-HADTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + A + L + G +L+ GD + R + Sbjct: 118 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 I +++S N Sbjct: 166 PSADQICEVVSANS 179 >gi|71734605|ref|YP_274103.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555158|gb|AAZ34369.1| ultraviolet light resistance protein RulA, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 147 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M R GD+L+++ + GD ++ + + L RG Sbjct: 45 EPHVYLARVEDEGMQGSGMRTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDV 102 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S + YP V + D+ + + Sbjct: 103 VILKSEHPDYPPLHVTDHDDLIILGVV 129 >gi|119775778|ref|YP_928518.1| XRE family transcriptional regulator [Shewanella amazonensis SB2B] gi|119768278|gb|ABM00849.1| putative transcriptional regulator, XRE family [Shewanella amazonensis SB2B] Length = 182 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+LA Sbjct: 2 DIGASLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLAGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + + S + + LL +P P Sbjct: 57 SLVEFFSIGDSASAEQKIVYRADELLDIGTGPLEFKLIGRDYPNRAMSVMSEIYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + ++ + Sbjct: 117 GEEMLKHVGEEAALVIEG 134 >gi|168485021|ref|ZP_02709959.1| cI repressor [Streptococcus pneumoniae CDC1873-00] gi|172041867|gb|EDT49913.1| cI repressor [Streptococcus pneumoniae CDC1873-00] Length = 255 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 63/256 (24%), Gaps = 44/256 (17%) Query: 1 MTSFSHKKIWEA------IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-------- 46 M S + I ++ + + L G+ ++ + Sbjct: 1 MAKNSPQDIENREYFSNKLNELMNAKAVRQIDLHNALGIPKSTLTGYVKGRSLPTAGNLQ 60 Query: 47 -------------EGRNRWPS-----TESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88 + R PS TE I I + +K E Sbjct: 61 KLADFFGVLKSTLDPRFASPSAPATITEKITLIADQLTPPRQEKALTYLKKQLLEQKNEN 120 Query: 89 ---EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQD 144 E + S GV GN I Sbjct: 121 IVSENIISLDDYRESKTLPVIGVVTAGNGITQDDN-LNIEKCFYTDEIPDDYDAIAYVVG 179 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 SM P + GD L + + QV+ + + G K L + L SLN Sbjct: 180 NSMEPKIKNGDYLFIKNTPQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDCAD 233 Query: 205 DTVEMS-DIEWIARIL 219 ++ DI I ++ Sbjct: 234 IQLDEDNDIRTIGEVV 249 >gi|297208786|ref|ZP_06925210.1| bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296886574|gb|EFH25483.1| bifunctional S24 family peptidase/transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 252 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 65/255 (25%), Gaps = 48/255 (18%) Query: 6 HKKIWEAIDRMAERHNLTPSGL-------ARKAGLD--PTSFNKSKRFGIEGRNRWPSTE 56 +K+ + + + NL + +K G+ ++ ++ Sbjct: 2 REKVSNRLKHIMKIRNLKQVDIINKSKPYQKKLGISLSKSTLSQYINDVQS--PDQDRIY 59 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF------- 109 + K L + + + E + + S V Sbjct: 60 LLSKTLNVGEAWLMGYDVDSYRVPDEERQDETIMSKINNIFSQLTPPRQENVLNYANEQL 119 Query: 110 ------------------------PTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKT 142 TG +I +T D Sbjct: 120 EEQNKVTSIDGYKESKLVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILV 179 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P+ ++G + + G L+ G + K + I+L+SLN Y Sbjct: 180 NGDSMEPMLKQGTYAFIKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKY 237 Query: 203 PVDTV-EMSDIEWIA 216 V SDI+ + Sbjct: 238 DDIKVASFSDIKVMG 252 >gi|301382555|ref|ZP_07230973.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302063078|ref|ZP_07254619.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] Length = 182 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + + K L+ + + + T P Sbjct: 57 SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 117 GEEMLIHEGEETGILVEG 134 >gi|213970668|ref|ZP_03398793.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|213924502|gb|EEB58072.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 198 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 18 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 72 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + + K L+ + + + T P Sbjct: 73 SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 132 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 133 GEEMLIHEGEETGILVEG 150 >gi|156933786|ref|YP_001437702.1| hypothetical protein ESA_01612 [Cronobacter sakazakii ATCC BAA-894] gi|156532040|gb|ABU76866.1| hypothetical protein ESA_01612 [Cronobacter sakazakii ATCC BAA-894] Length = 201 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 58/225 (25%), Gaps = 41/225 (18%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T+ S ++ + + LA AG+ + K R S+ I + Sbjct: 3 TTLSQ-----RLEIAMTAGGFSQASLAEAAGVSQPTVWKIVSG------RTQSSAKIVDL 51 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 A L S + ++Y G ++ K + V Sbjct: 52 AKALGVRPEWLAHGVGSMKSEQVETSNASSIVY------EGTIALPLYDESEKQIGLTVV 105 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 H A + + P +G ++++S D + K Sbjct: 106 PDAINHEKSRAYKLNY-------ETGFPELPQGCTIVVDSEETPVNNDFVYAKINGKSSA 158 Query: 182 AKVLIS-------RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L + L+ + +E + I+ Sbjct: 159 YRYLTRGPQNYLDVGDSRLGLVPI----------DERVEILGVIV 193 >gi|28867345|ref|NP_789964.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|302133575|ref|ZP_07259565.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850579|gb|AAO53659.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331018535|gb|EGH98591.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 199 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + + K L+ + + + T P Sbjct: 74 SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 134 GEEMLIHEGEETGILVEG 151 >gi|149188518|ref|ZP_01866811.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] gi|148837736|gb|EDL54680.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] Length = 185 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I ++ + L+ LA KAG+ ++ + + + PS S+ KI+ + Sbjct: 5 QIGKNIAQLRKERGLSQRELAEKAGITHSAISSIENAKV-----SPSVSSLQKIVNVFSL 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 ++ + L + + + K L+ Sbjct: 60 SLSEFFTLEQQENKEIKVVVKPEDLIEI 87 >gi|150005927|ref|YP_001300671.1| putative SOS-response transcriptional repressor [Bacteroides vulgatus ATCC 8482] gi|149934351|gb|ABR41049.1| putative SOS-response transcriptional repressor [Bacteroides vulgatus ATCC 8482] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + Q SM GDI+I++ + + ++ + G+ K + + Sbjct: 131 PDSSYLIRVQGRSMIEAGVNDGDIIIVDKSERNPTEKQIAVCELNGEYTLKRVCKKE-GI 189 Query: 193 IDLMSLNCCYPVD-TVEMSDIEWIARI 218 + L+ N YP ++ D + Sbjct: 190 LWLVPANPEYPEIKIIDGDDFSVWGVV 216 >gi|78186413|ref|YP_374456.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166315|gb|ABB23413.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 205 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I + I + + L+ LAR+ + T+ K + E R R + K Sbjct: 1 MTEENIGQRIKELRGQKGLSQEELARRIAMPRTAVTKIESGSQEVRFRE-----LAKFAE 55 Query: 64 ATNET 68 A + Sbjct: 56 ALGIS 60 >gi|193214608|ref|YP_001995807.1| peptidase S24 and S26 domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193088085|gb|ACF13360.1| peptidase S24 and S26 domain protein [Chloroherpeton thalassium ATCC 35110] Length = 251 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 10/133 (7%) Query: 89 EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 E ++ P V + + +P + H + + SM+ Sbjct: 120 EDAMVEIPVFMHRVSAGPAVASSSEIEEYIKLPTVLLKH------PKRSYAVRASGNSMV 173 Query: 149 PL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 GD+LI++ + ++ G+ K L+ + L N Y + Sbjct: 174 GAGIHSGDLLIVDQEAAIKHKCIVI-ASINGEQTVKRLL-IEDGELVLAPENSHYQSTPI 231 Query: 208 EMS-DIEWIARIL 219 + + ++ Sbjct: 232 TKEMNFSILGVVM 244 >gi|182676970|ref|YP_001831117.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636600|gb|ACB97373.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 217 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 24/198 (12%) Query: 8 KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + R + + + AR G + ++ + R E K + Sbjct: 2 ELFHRLRRARKNAGFPSATEAARAFGWNANTYRSHENGER--GVRMAMAERYAKAFRVSV 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + P + + P G+ P Sbjct: 60 PWLLTGMPHPDARC-----------VACLAGRVVAQGRIETHRPGGS-------PLSCKN 101 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAK 183 Y + + + P Y GD+++ +Q G +K G I K Sbjct: 102 IMLPYPVPEGALVFEITGDHLWPRYESGDVVVCWKPARTLQEADGWEAAVKLADGQIYLK 161 Query: 184 VLISRRGRSIDLMSLNCC 201 + R G DL+S N Sbjct: 162 TVRYREGHQADLVSHNSA 179 >gi|320322230|gb|EFW78326.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331879|gb|EFW87817.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 199 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 74 SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133 Query: 127 HNGIYAIQTQDTRHKTQD 144 + ++T + Sbjct: 134 GEEMLVHDGEETGILVEG 151 >gi|71737818|ref|YP_272531.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558371|gb|AAZ37582.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|330873076|gb|EGH07225.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330986843|gb|EGH84946.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009416|gb|EGH89472.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 182 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 57 SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + ++T + Sbjct: 117 GEEMLVHDGEETGILVEG 134 >gi|238852892|ref|ZP_04643295.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] gi|238834484|gb|EEQ26718.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] Length = 213 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ E ++ + ++ +T LA K G+ + N +R + PS +++ + A Sbjct: 16 RERVKENLNELLKKRGMTQKELAEKTGISYATINNYRRAYAQSSL--PSKKNLLAMAKAL 73 Query: 66 NETICQLLDLP 76 N ++ Sbjct: 74 NCEPDEIDPSY 84 >gi|258406641|ref|YP_003199382.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798868|gb|ACV69804.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 76 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 7/71 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +++ + I ++ L+ LA K G D T + +R R PS ++ K Sbjct: 2 MKPL--EELGQEIKSRRKQLGLSQEKLADKCGFDRTYISMVERG-----KRNPSLLNLLK 54 Query: 61 ILAATNETICQ 71 I ++ + Sbjct: 55 IAKGLEASVSE 65 >gi|21230716|ref|NP_636633.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188992439|ref|YP_001904449.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|21112308|gb|AAM40557.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167734199|emb|CAP52407.1| transcriptional regulator [Xanthomonas campestris pv. campestris] Length = 460 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ GL P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRP 50 >gi|293397071|ref|ZP_06641345.1| XRE family transcriptional regulator [Serratia odorifera DSM 4582] gi|291420542|gb|EFE93797.1| XRE family transcriptional regulator [Serratia odorifera DSM 4582] Length = 189 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 47/137 (34%), Gaps = 7/137 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESIFK 60 +++ + + + ++ + LA++ G+ + ++ +R +T ++ + Sbjct: 10 QRLAQRLVALRQQRGWSLEALAQQTGISRATLSRIERMETSPTASLLNTLCAAYGLTMSR 69 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L+ + +LL + P + F G +G + Sbjct: 70 LLSELDNEPPELLSRQQQPVWVDHASGFHRRSVSPPTALYQAEFIEGTLQSGARIEY-DA 128 Query: 121 PEIRSPHNGIYAIQTQD 137 P I + ++ I + Sbjct: 129 PSIHGLEHHLWMIDGEL 145 >gi|257481782|ref|ZP_05635823.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 199 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 74 SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133 Query: 127 HNGIYAIQTQDTRHKTQD 144 + ++T + Sbjct: 134 GEEMLVHDGEETGILVEG 151 >gi|189468069|ref|ZP_03016854.1| hypothetical protein BACINT_04463 [Bacteroides intestinalis DSM 17393] gi|189436333|gb|EDV05318.1| hypothetical protein BACINT_04463 [Bacteroides intestinalis DSM 17393] Length = 250 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 59/210 (28%), Gaps = 19/210 (9%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 T + LA G+ ++ + + K+ + P + Sbjct: 36 TDADLAAYLGVSRSTLSNWIARNSTDFP-----LLLSKMKDVDYNWLLLGKGSPVYQAKL 90 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-------AIQT 135 + + + + + + + + +I Sbjct: 91 CNSEYARGEVEIVHNPKTPDLVGDRSVALYDITAAANLKTLLANKHQYVVGKIQIPSIPL 150 Query: 136 QDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRR 189 D SM P+ + GDI+ ++S V G+ L+ + K + Sbjct: 151 CDGALYISGDSMYPILKSGDIVGFKEISSFSNVIYGEMYLVSFNIDGDEYLAVKYVNRSE 210 Query: 190 -GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 I L+S N + V + I+ +A + Sbjct: 211 IDGCIKLVSYNPHHEPMDVPFAAIQAMAIV 240 >gi|152985210|ref|YP_001351391.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960368|gb|ABR82393.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 182 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 50/167 (29%), Gaps = 14/167 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + L T+ K L+ P+ + P Sbjct: 57 SLVEFFSLDLEQDSHTQVVYKADELIDISSGAVSMRLVGKAHPSRAIAFLDETYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + ++ L ++ + + GD Sbjct: 117 GEEMLNHEGEEAGVLVDGRLEL--------IVGSETYVLERGDSYYF 155 >gi|153835210|ref|ZP_01987877.1| repressor protein c2 [Vibrio harveyi HY01] gi|148868320|gb|EDL67448.1| repressor protein c2 [Vibrio harveyi HY01] Length = 231 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 56/200 (28%), Gaps = 20/200 (10%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + ++ +R WP + K+ + + + + Sbjct: 32 SQPTLSRVERG---AVPSWPIVDGYCKLFGWS-LSELEKRLHREIPETNLDSMPAPTRKR 87 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA--IQTQDTRHKTQDTSML--- 148 + GN W E + K TSM Sbjct: 88 SVNQNAGRDIAVLSWVQAGN-WGESPCIEKHNQETKFIPGKSPKNAYLLKVNGTSMENCG 146 Query: 149 --PLYRKGDILILNS----AIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSIDLMSLNCC 201 + G +++N IQ G ++ T + K L+ G L LN Sbjct: 147 GKDHFPNGSFILVNPDVSGTIQDYVGKFVVAVDESTQEATFKQLVEDGGARY-LKPLNLQ 205 Query: 202 YPVDTV-EMSDIE-WIARIL 219 YPV V E + I+ + R++ Sbjct: 206 YPVIKVTETTHIKGVVCRVI 225 >gi|123442595|ref|YP_001006572.1| repressor protein CI [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089556|emb|CAL12404.1| repressor protein CI [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 199 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 26/179 (14%) Query: 9 IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E ++ + +T LA+ +G+ + + + +G T+ + I A N Sbjct: 5 LAERLNIAMQLRGNMTQGALAKASGISQPTIWRLIKGEAKG------TKKLVDIANALNV 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSP 126 L + + G ++V P+ +P Sbjct: 59 NAEWLANGVGEMEGNNPTPR--------VDRIDNNSYVPVWTVAGQTNDSVVAPDGKVTP 110 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 Y + S P G I+I++++++ D ++ G Sbjct: 111 SWRAYILDRN------SGCSEAPA---GSIVIVDTSLKPGTNDLVVAI-NGGSASVYRF 159 >gi|94987119|ref|YP_595052.1| hypothetical protein LI0677 [Lawsonia intracellularis PHE/MN1-00] gi|94731368|emb|CAJ54731.1| hypothetical protein LI0677 [Lawsonia intracellularis PHE/MN1-00] Length = 253 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 25/219 (11%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 T + LA + +S + +KR E K+ + Sbjct: 40 TQAELANILEIRQSSISDAKRRDSVPP------EWYIKLFEKFGLNPDWIKQGVGPMYLR 93 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGV--------FPTGNKWNTVGVPEIRSPHNGIYAIQ 134 TE+ L + + + F + G A+ Sbjct: 94 TEQGYIPRELPLTGVQETPMHYGDPISKSVLHTVFSMRCNYIENSNSLPILQPTGKIALP 153 Query: 135 -----TQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLISR 188 +T+ + LPL R+ L +N+ G+ + I K L Sbjct: 154 QPYTGANILVFQTESDAFLPLVRRYTYLGINTDFTHPQSGEIYAVFMPYEGIALKRLFLS 213 Query: 189 R-GRSIDLMSL-NCCYPVDTVEMSD--IEWIARILWASQ 223 L + N + + + I + R+ W Q Sbjct: 214 TQKNGFCLCTDQNDSHESF-LPAQECPIRILGRLAWVFQ 251 >gi|66769288|ref|YP_244050.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66574620|gb|AAY50030.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 460 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ GL P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRP 50 >gi|332800291|ref|YP_004461790.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332698026|gb|AEE92483.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 103 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I ++ E L+ LA KAGL N+ + R E++ KI A Sbjct: 7 DIGKRIRQLRESLGLSNRQLAIKAGLSQPVMNRIENGN-----RKADIETLEKICYALGI 61 Query: 68 TICQLLDLPFSDGRTTE 84 T+ + + Sbjct: 62 TLIDFFSIDEEEMSPEY 78 >gi|126173345|ref|YP_001049494.1| cupin 2 domain-containing protein [Shewanella baltica OS155] gi|152999697|ref|YP_001365378.1| cupin 2 domain-containing protein [Shewanella baltica OS185] gi|160874315|ref|YP_001553631.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|217974352|ref|YP_002359103.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|304409280|ref|ZP_07390900.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183] gi|307303638|ref|ZP_07583391.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175] gi|125996550|gb|ABN60625.1| transcriptional regulator, XRE family with cupin sensor [Shewanella baltica OS155] gi|151364315|gb|ABS07315.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS185] gi|160859837|gb|ABX48371.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|217499487|gb|ACK47680.1| transcriptional regulator, XRE family [Shewanella baltica OS223] gi|304351798|gb|EFM16196.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183] gi|306912536|gb|EFN42959.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175] gi|315266550|gb|ADT93403.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS678] Length = 182 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + S + + LL +P P Sbjct: 57 SLVDFFSIEASADSEQKVVYRSNELLDIGTGPLEFKLIGRDYPNRAMSVMSEIYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + ++ + GD + + + GD Sbjct: 117 GEEMLKHEGEEAAMVIEGKF---ELTVGDEVYI-----LEAGDSYYFNSEVPH----RFR 164 Query: 187 SRRGRSIDLMSL 198 + L+S Sbjct: 165 NPFDEPCRLVSA 176 >gi|196232729|ref|ZP_03131580.1| transcriptional repressor, LexA family [Chthoniobacter flavus Ellin428] gi|196223189|gb|EDY17708.1| transcriptional repressor, LexA family [Chthoniobacter flavus Ellin428] Length = 203 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 + K + SM+ L + + G + G+ K L+ +R Sbjct: 114 KRVFALKVRGDSMIGAAINDGDLAILENREPQAGAIVAALID-GETTLKRLVQQR-GRYY 171 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L + N +P + M+++ ++ Sbjct: 172 LRAENPNFPDL-MPMAELSVQGVLV 195 >gi|157414964|ref|YP_001482220.1| hypothetical protein C8J_0644 [Campylobacter jejuni subsp. jejuni 81116] gi|157385928|gb|ABV52243.1| hypothetical protein C8J_0644 [Campylobacter jejuni subsp. jejuni 81116] gi|307747603|gb|ADN90873.1| Transcriptional regulator, putative [Campylobacter jejuni subsp. jejuni M1] Length = 141 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 6/91 (6%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-GRS 192 K SM+P+ ++ + GD L I ++ K+L + Sbjct: 48 PKNMKAIKVDGYSMVPMLLPDSWVVFEETHKYQ-GDGLYILNFDNQLMVKLLQLDPISKV 106 Query: 193 IDLMSLNCCYPVDTVEMSD----IEWIARIL 219 +D++S+N Y ++++ D + ++L Sbjct: 107 LDIISVNKDYKSYSLDLKDSQVELIIQGKVL 137 >gi|294669733|ref|ZP_06734799.1| hypothetical protein NEIELOOT_01633 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308299|gb|EFE49542.1| hypothetical protein NEIELOOT_01633 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 102 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 6/92 (6%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + +M P L+++ + + + + + R I Sbjct: 8 RNHCGIFSVHGEAMKPTLDGRCELLVDFSDNKLADGGIYALQIGSRSLVRRVKLLL-RQI 66 Query: 194 DLMSLNCCYPVDTVEMSD---IEWIARI--LW 220 L N YP T+E D ++ I R+ +W Sbjct: 67 ILACDNPEYPDMTIEGEDLNRLKVIGRVRGVW 98 >gi|254785721|ref|YP_003073150.1| DNA-binding protein [Teredinibacter turnerae T7901] gi|237684567|gb|ACR11831.1| DNA-binding protein [Teredinibacter turnerae T7901] Length = 200 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 63/190 (33%), Gaps = 44/190 (23%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + ++ E + + ++H L+ LAR+A + ++ + ++ + PS S+ K+L+A Sbjct: 19 NNRLGERLQAVRKQHGLSQRELARRAEVTNSTLSMIEQGKV-----SPSVASLEKVLSAI 73 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 T+ + + + + + + +P + Sbjct: 74 PMTLQEFFSDTLEILPPIYRAADFLSIRK------------------DGTENLIMPLPEA 115 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+G+Y + + P + ++ G ++ G++V Sbjct: 116 GHDGVYLSRQ----------TYSPGSQISTEWMIRKG---FVGGIVVE----GELVL--- 155 Query: 186 ISRRGRSIDL 195 G L Sbjct: 156 -RLDGNEYQL 164 >gi|313207466|ref|YP_004046643.1| hypothetical protein Riean_1984 [Riemerella anatipestifer DSM 15868] gi|312446782|gb|ADQ83137.1| hypothetical protein Riean_1984 [Riemerella anatipestifer DSM 15868] gi|315023362|gb|EFT36372.1| hypothetical protein RAYM_09285 [Riemerella anatipestifer RA-YM] gi|325335076|gb|ADZ11350.1| hypothetical protein RIA_0163 [Riemerella anatipestifer RA-GD] gi|329025331|gb|AEB71695.1| hypothetical protein [Riemerella phage RAP44] Length = 252 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 77/249 (30%), Gaps = 32/249 (12%) Query: 1 MTSFSHKKIWEAI-DRMAERHNL--------TPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 M K I + DR+ +N T + LA K G ++F+ + G R Sbjct: 1 MKKIIQKSIKNNLKDRLNTVYNYLKKTTEFTTQTLLAEKIGYTRSNFSAALN----GDER 56 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI--------PLLYFPPSGSGGF 103 + + + KI+ A + + + + ++ G Sbjct: 57 YLTEGVVDKIVEAFPQLNREWFITGKGEMLKSSEETPIKGEGVKVILDAEIKRTPSEGTP 116 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LN 160 + F G + + S + + + S+ + G I+ + Sbjct: 117 YYDVDFAGGWNSDEIFSLGNPSFYIQSPDFRRAEFATNLVGNSISKIIPSGAIVGFRQVE 176 Query: 161 SAIQVNCGDRLLIKPRTGDI-VAKVLISRRG--RSIDLMSL----NCCYPVDTVEMSDIE 213 + L ++ K + ++G ++ L+ + Y + + + + Sbjct: 177 DWKTYFPTNELYGIITKNEMRTVKRVKRKKGDSNTLVLIPDPLEVHSGYEPEELPIDFVS 236 Query: 214 WIARIL-WA 221 + +++ WA Sbjct: 237 KMFQVVAWA 245 >gi|330973936|gb|EGH74002.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 147 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213 D+L+++ + GD ++ I + L RG + L S N YP V + D+ Sbjct: 67 DMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDVVILESQNPDYPPLHVTDNDDLI 124 Query: 214 WIARI 218 + + Sbjct: 125 ILGVV 129 >gi|330942619|gb|EGH45192.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. pisi str. 1704B] Length = 147 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M GD+L+++ + GD ++ I + L RG Sbjct: 45 EPHAYLARIEDQGMQGGGMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDV 102 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S N YP V + D+ + + Sbjct: 103 VILESQNPDYPPLHVTDNDDLIILGVV 129 >gi|330897598|gb|EGH29017.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. japonica str. M301072PT] Length = 147 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213 D+L+++ + GD ++ I + L RG + L S N YP V + D+ Sbjct: 67 DMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDVVILESQNPDYPPLHVTDNDDLI 124 Query: 214 WIARI 218 + + Sbjct: 125 ILGVV 129 >gi|15600494|ref|NP_253988.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116053448|ref|YP_793775.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894404|ref|YP_002443274.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238004|ref|ZP_04931327.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|254243812|ref|ZP_04937134.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|296392160|ref|ZP_06881635.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313106725|ref|ZP_07792942.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951617|gb|AAG08686.1|AE004943_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588669|gb|ABJ14684.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169935|gb|EAZ55446.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|126197190|gb|EAZ61253.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|218774633|emb|CAW30450.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310879444|gb|EFQ38038.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 182 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + L T+ K L+ P+ + P Sbjct: 57 SLVEFFSLDLEQDSHTQVVYKADELIDISSGAVSMRLVGKAHPSRAIAFLDETYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 GEEMLNHEGEEAGVLVDG 134 >gi|329890293|ref|ZP_08268636.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845594|gb|EGF95158.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 188 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I + + +R L+ LARKAG+ ++ + + PS S+ ++L Sbjct: 6 MEEENIIGPRLRALRDRLGLSQRALARKAGVPSSTVSLVESGRT-----SPSVGSLKRLL 60 Query: 63 AATNETICQLL 73 A ++ Sbjct: 61 DAAGISLGDFF 71 >gi|225377108|ref|ZP_03754329.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] gi|225211013|gb|EEG93367.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] Length = 178 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +I I + + LT +A++ G+ + NK + P E + I Sbjct: 1 MTQMQIGSVIRKYRKECGLTQEEMAKRLGVTTPAVNKWENGNTN-----PDIELLAPIAR 55 Query: 64 ATNET 68 + + Sbjct: 56 LLHIS 60 >gi|66045157|ref|YP_234998.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] gi|63255864|gb|AAY36960.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] Length = 147 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M GD+L+++ + GD ++ I + L RG Sbjct: 45 EPHAYLARIEDQGMQGSGMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDV 102 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S N YP V + D+ + + Sbjct: 103 VILESQNPDYPPLHVTDNDDLIILGVV 129 >gi|217979165|ref|YP_002363312.1| putative phage repressor [Methylocella silvestris BL2] gi|217504541|gb|ACK51950.1| putative phage repressor [Methylocella silvestris BL2] Length = 211 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 23/189 (12%) Query: 34 DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 P + KR G R +TE++ + T LL+ + ++ Sbjct: 30 KPDAIRNLKRAVKSGDRRGVTTETLTALAPVLKTTAAWLLEGVGDP-----TPGNRVHVV 84 Query: 94 YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 +G+ F + P PE + I T + + SM P Y Sbjct: 85 GRIGAGAEIFPEFEQTP----------PEGLYEIEVPFPIATDAIAFQVEGDSMWPRYDP 134 Query: 154 GDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEM 209 GD++I + G ++ G K + + + DL S N + Sbjct: 135 GDVIICWREGADAEEVVGWEAAVRTADGKRYLKRIQRGAKAGTFDLESHNAA----PIRS 190 Query: 210 SDIEWIARI 218 IEW A I Sbjct: 191 VKIEWAAAI 199 >gi|281355057|ref|ZP_06241551.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281317937|gb|EFB01957.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 73 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 20/48 (41%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 S + I E + + + + LAR+ G+ ++ N+ + + Sbjct: 1 MPSMENIAEQLKALRRQRGWSQEDLARELGVSFSTVNRWENGKAKPSR 48 >gi|330980471|gb|EGH78574.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 109 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 6/109 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + L + LA +AG+ TS + +R + T + KI Sbjct: 5 DRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKA------TAHVAKIADVCGVNAL 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L D E + S + G V Sbjct: 59 WLSDGKGDMTAFITSNEPSNVSMAEQSSRMYRYPLVSWVAAGEWSEAVE 107 >gi|313111272|ref|ZP_07797090.1| cI repressor protein [Pseudomonas aeruginosa 39016] gi|310883592|gb|EFQ42186.1| cI repressor protein [Pseudomonas aeruginosa 39016] Length = 85 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YP 203 M P GD+L+++ + ++ + + + K L+S + S N +P Sbjct: 1 MEPTINDGDVLLVDLSKIEPEDHQVFVLAGSDGAIVKRLVSSTFGRWIIRSDNEDKAEFP 60 Query: 204 VDTV---EMSDIEWIARILW 220 + + + I +++W Sbjct: 61 DRNLSREDNDEHRIIGKVIW 80 >gi|283954865|ref|ZP_06372381.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni 414] gi|283793705|gb|EFC32458.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni 414] Length = 284 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 73/223 (32%), Gaps = 29/223 (13%) Query: 25 SGLARKAGLDPTSFNKSKRFGI----EGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80 + K G+D + E + + +S+ ++ + + Sbjct: 48 KEFSEKLGIDMNLITNPEMENYYELVEELKTFFNVKSLEEVAERLGYKKNNANNWRNNKQ 107 Query: 81 RTTEKKEKEIP---------LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + +K + + S + +F G + + + Sbjct: 108 LSAQALKKYYELKKANNSVSIHHHKDSITIRYFPDIYASAGFGNASENENFQLINIDKTF 167 Query: 132 AIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGDI 180 I+ +Q K SM P + G +I+++ ++ GD ++ + + ++ Sbjct: 168 LIEVLGVPYKSQYDMIKIFGNSMEPFIQNGSFIIIDTTKNSLDKIRNGDVVIFRKDS-EL 226 Query: 181 VAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 K ++ +I + S N + V+ + ++ +I ++ Sbjct: 227 FCKRILKNAFDDNIIISSDNVNFNDKKVKKTALKEYIFIGVVV 269 >gi|216905986|ref|YP_002333582.1| gp21 [Bacillus phage TP21-L] gi|215809713|gb|ACJ70547.1| gp21 [Bacillus phage TP21-L] Length = 210 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 21/181 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I R+ E+ + G+ ++ + ++ KI A T Sbjct: 19 ENIKRLMEKKGFRQVDMVNATGIARSTMSTYINAKSV-----IPMVALQKIADALGVTKA 73 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 Q++DL S G + + P Sbjct: 74 QIVDLDSS--------------ESVSVMGVKKLPIYNNIKSEYGEIELNDPSGYLDTPFS 119 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + ++ QD SM G +++ V GD + + +I+ + + + Sbjct: 120 WIGNNDHFYYEVQDDSMF-GITAGSKALVHRQSVVENGD-MALIAVNNEILIRRVYKDKN 177 Query: 191 R 191 Sbjct: 178 E 178 >gi|117618444|ref|YP_856575.1| umuD protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559851|gb|ABK36799.1| umuD protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 140 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 7/105 (6%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + SM+ GD+L+++ A++ + G +++ Sbjct: 31 DYVE--QTIDLNQVCIQHPAATFYVRACGYSMVGEGIHDGDLLVIDRAVKASHG-AVVLA 87 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218 G+ K L L+ N + ++ ++E + Sbjct: 88 CLDGEFTVKKLQETP--IPALLPSNPDFQPIYLQEGQELEIFGVV 130 >gi|49081740|gb|AAT50270.1| PA5301 [synthetic construct] Length = 183 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGARLRTIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + L T+ K L+ P+ + P Sbjct: 57 SLVEFFSLDLEQDSHTQVVYKADELIDISSGAVSMRLVGKAHPSRAIAFLDETYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 GEEMLNHEGEEAGVLVDG 134 >gi|289662784|ref|ZP_06484365.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 184 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ GL P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRP 50 >gi|170719389|ref|YP_001747077.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169757392|gb|ACA70708.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 182 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 56/192 (29%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + + + K L+ P + T P Sbjct: 57 SMVEFFSVELEAESHAQIVYKAHELIDISDGAVTMKLVGKSHPNRAIAFLTEVYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + ++T + L ++ + GD + Sbjct: 117 GAEMLTHDGEETGILLEGRLEL--------VVGTETFVLEEGDSYYFESTRPH----RFR 164 Query: 187 SRRGRSIDLMSL 198 + L+S Sbjct: 165 NPFDEPARLISA 176 >gi|312126654|ref|YP_003991528.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776673|gb|ADQ06159.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 105 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + E+ L+ S LA+ AG+ ++ + + R P+ + I KI A Sbjct: 3 DVGKRIKELREQCGLSMSKLAKIAGVGQSTLSYIENGE-----RSPTIDVIMKICNALGI 57 Query: 68 TICQLLDLPFSDGRTTE 84 T+ + + Sbjct: 58 TLVEFFGGEEKTHLESP 74 >gi|70733319|ref|YP_263093.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347618|gb|AAY95224.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 182 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 5/91 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 ++ + ++ K L+ Sbjct: 57 SMVEFFSEEVLQETPSQIVYKAHELIDISDG 87 >gi|332829077|gb|EGK01741.1| hypothetical protein HMPREF9455_01889 [Dysgonomonas gadei ATCC BAA-286] Length = 237 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 68/232 (29%), Gaps = 34/232 (14%) Query: 4 FSH-KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I + ID + ++ + + G+ + + + E+I KI Sbjct: 5 LTQKDRIIQFID----KQGISKNKFYNQTGVSNGTL---------DKKSGITGETIAKIY 51 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A E + L + + L + + P Sbjct: 52 TAYPEINLEWLISGEGEMIKSSLFWSYDNLQSVREQYAAVMNIDPATVSDKNLLKAESPL 111 Query: 123 IRSPH---------NGIYAIQ---TQDTRHKTQDTSMLPLYRKGDILIL---NSAIQVNC 167 P +G +I + D + SM PL + GDI+ N + Sbjct: 112 EFIPIFSYKGSHKCHGYLSIPNLSSCDGAGFVKTDSMYPLIKPGDIVCYKTANHTNDIYW 171 Query: 168 GD--RLLIKPRTGD-IVAKVLIS--RRGRSIDLMSLNCCYPVDTVEMSDIEW 214 G+ + + + + K L I L N Y V ++ I+W Sbjct: 172 GEMYIIYLTIDGEEFLTIKNLDKSDIGDDFIRLSGYNQKYHPKDVPINSIQW 223 >gi|320354394|ref|YP_004195733.1| XRE family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122896|gb|ADW18442.1| transcriptional regulator, XRE family [Desulfobulbus propionicus DSM 2032] Length = 436 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + ++ L+ LA KAG+ P+S ++ ++ I +PS ++F++ + Sbjct: 255 DLGARIKAVRKKQGLSQKELAEKAGVTPSSISQIEKNLI-----YPSLPALFRLAESL 307 >gi|153806948|ref|ZP_01959616.1| hypothetical protein BACCAC_01224 [Bacteroides caccae ATCC 43185] gi|149130068|gb|EDM21278.1| hypothetical protein BACCAC_01224 [Bacteroides caccae ATCC 43185] Length = 237 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 62/232 (26%), Gaps = 21/232 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + I R + NL S LA G+ + + K+ Sbjct: 1 MDTNLDVPGIIKRAKQALNLKRDSELAEFLGVSRATVTNWAARNSIDFR-----LLLDKL 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + L + E + + T Sbjct: 56 GNTVDYNWLLLGKGNPKHQSRFCESELAQGEVQIIHNPKTAEPVDDRSVTLYDITAAANL 115 Query: 122 EIRSPHNGIYAIQT--------QDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170 + + YA+ D SM P+ + GDI+ +NS V G+ Sbjct: 116 KTLFTNKHQYALGKIRIPNISACDGAVYVNGDSMYPILKSGDIIGYKEINSFESVIYGEI 175 Query: 171 LLIKPRTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L+ + K + I L+S N + + + I +A + Sbjct: 176 YLVSFMIDGDEYLAVKYANRSEKEGCIKLVSYNTHHEPMDIPFAAINAMAIV 227 >gi|160872218|ref|ZP_02062350.1| putative lambdoid prophage e14 repressor protein C2 [Rickettsiella grylli] gi|159121017|gb|EDP46355.1| putative lambdoid prophage e14 repressor protein C2 [Rickettsiella grylli] Length = 222 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 20/208 (9%), Positives = 59/208 (28%), Gaps = 16/208 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +A + L+ + + + I K + + Sbjct: 9 KNLRILARTAG-GITVLSERLDRSQSQISHLIGNNPIKNIGDRLASHIEKTFNKPHGWLD 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 +G + + + + + V + Sbjct: 68 HEHVAEEVEGTYHYQNIQPYYQVPLLSAQEAKERFLHFTK-------ISVKTYSKYLSTN 120 Query: 131 YAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRL---LIKPRTGDIVAK 183 + + + ++ M P + K I++L++ + D + + + + ++ + Sbjct: 121 IPLTSDAFALRVENDCMETAQGPSFSKNCIIVLDTDCVPHNADFVLAKVKQDPSSTLLFR 180 Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD 211 L+ R L +LN YP ++ D Sbjct: 181 QLVFDGNRRY-LKALNRQYPTTEMQPDD 207 >gi|330501217|ref|YP_004378086.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328915503|gb|AEB56334.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 182 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSP 126 ++ + L + + L P+ + P Sbjct: 57 SLVEFFSLDMEQENQIQVVYRASELTDICSGAITMKLIGKAHPSRAISFLDETYPAGTDT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + +YA + ++ + Sbjct: 117 GDEMYAHEGEEAGMLVEG 134 >gi|269138965|ref|YP_003295666.1| regulatory prophage protein cI [Edwardsiella tarda EIB202] gi|267984626|gb|ACY84455.1| regulatory prophage protein cI [Edwardsiella tarda EIB202] Length = 86 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 29/76 (38%), Gaps = 4/76 (5%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 M D++ ++ +++ GD + K L + ++ ++S N Y + Sbjct: 1 MKGTIDPEDLVFIDISVKYFDGDGVYAFTYGSTSHIKRLQMVKN-TLTVISDNPAYANWS 59 Query: 207 V---EMSDIEWIARIL 219 + + + +++ Sbjct: 60 IEKGDEDQMHINGKVI 75 >gi|298486437|ref|ZP_07004498.1| Peptidase S24, S26A and S26B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159065|gb|EFI00125.1| Peptidase S24, S26A and S26B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 147 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M R GD+L+++ + GD ++ + + L RG Sbjct: 45 EPHVYLARVEDEGMQGGGMRTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDV 102 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S + YP V + D+ + + Sbjct: 103 VILKSEHPDYPPLHVTDHDDLIILGVV 129 >gi|146305289|ref|YP_001185754.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145573490|gb|ABP83022.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 182 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 57/192 (29%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + L T+ + L P+ + P Sbjct: 57 SLVEFFSLDLEQENQTQVVYRASELTDICSGAITMKLIGKAHPSRAIAFLDETYPAGADT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + +YA + ++ + G + + + GD + Sbjct: 117 GDEMYAHEGEEAGMLVEGKL---ELTVGSEVFV-----LEPGDSYYFESSKPH----RFR 164 Query: 187 SRRGRSIDLMSL 198 + L+S Sbjct: 165 NPFDEPARLISA 176 >gi|239630752|ref|ZP_04673783.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527035|gb|EEQ66036.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 190 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + I T S LA+KAG+ T+ + +R R PS E + K Sbjct: 1 MITLKN-----RIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGT-----RTPSAEVLKK 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + L+ L + T + + SG+ + V G+++ Sbjct: 51 LADIFETNTAYLMGLTDA-PAETLTNSNLKNIEFEVRSGAFQRLANIVLSIGSEY 104 >gi|319646361|ref|ZP_08000591.1| YqaE protein [Bacillus sp. BT1B_CT2] gi|317392111|gb|EFV72908.1| YqaE protein [Bacillus sp. BT1B_CT2] Length = 120 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 5/89 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + L+ LA + G ++ R P E++ KI + Sbjct: 2 LGKRIAALRKEKGLSQYELADRLGFSRGKLANYEQGT-----REPDYETLIKIADFFEVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 LL + +++ +L P Sbjct: 57 TDYLLRGVDPKVQDKIFEDEAKRILNDPK 85 >gi|331005212|ref|ZP_08328606.1| Transcriptional regulator, MerR family [gamma proteobacterium IMCC1989] gi|330420994|gb|EGG95266.1| Transcriptional regulator, MerR family [gamma proteobacterium IMCC1989] Length = 180 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 12/166 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + ++ + + L+ LA++AG+ +S + ++ + PS S+ K+L Sbjct: 3 DEIAVRLQKVRKIYGLSQRELAKRAGVTNSSVSMIEQGRV-----SPSLSSLEKLLKGIP 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + F+D + ++ V P Sbjct: 58 MSTKDFFTIDFNDEADCFFRSYQMFSRTNKAVDCYHLLRDENDERSQLSYEVYEP-GSDT 116 Query: 127 HNGIYAIQTQDTRHKTQDT------SMLPLYRKGDILILNSAIQVN 166 + Q + + Q S + GD I+ + Sbjct: 117 GEDMLVDQGRSSGFVVQGKLNVIISSQIDDLDAGDGFIVEAGHPYR 162 >gi|28898552|ref|NP_798157.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus RIMD 2210633] gi|153836272|ref|ZP_01988939.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|260365009|ref|ZP_05777580.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|260879596|ref|ZP_05891951.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|260894929|ref|ZP_05903425.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|260901062|ref|ZP_05909457.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|28806770|dbj|BAC60041.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149750547|gb|EDM61292.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|308085951|gb|EFO35646.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|308093441|gb|EFO43136.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|308110714|gb|EFO48254.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|308111572|gb|EFO49112.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|328468839|gb|EGF39799.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus 10329] Length = 185 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I ++ ++H L+ LA +AG+ ++ + + + PS S+ KI+ + Sbjct: 5 EIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKV-----SPSVSSLQKIVNVFSL 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 ++ + S + K L+ Sbjct: 60 SLSEFFIFEQSSNDEVKVVFKPSDLVEI 87 >gi|213963953|ref|ZP_03392198.1| transcriptional regulator [Capnocytophaga sputigena Capno] gi|213953366|gb|EEB64703.1| transcriptional regulator [Capnocytophaga sputigena Capno] Length = 323 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 5/108 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170 ++ E ++ + SM P + G +I + + ++ Sbjct: 170 GYDDSNYIEELPTYSVPDMRNGTYRMFQVSGFSMYPTLQDGSYVIGKFVENWEWLSDNRV 229 Query: 171 LLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++ I+ K + +R + S N Y TV + DI I Sbjct: 230 CVVVTECDGIIVKRVTNRAREKGFLYCKSDNRDYKHITVRVEDIREIW 277 >gi|227551856|ref|ZP_03981905.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257895552|ref|ZP_05675205.1| repressor protein [Enterococcus faecium Com12] gi|293568950|ref|ZP_06680263.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|294619352|ref|ZP_06698816.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] gi|227179028|gb|EEI60000.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257832117|gb|EEV58538.1| repressor protein [Enterococcus faecium Com12] gi|291588383|gb|EFF20218.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|291594401|gb|EFF25814.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] Length = 123 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++H T + LA+K + + + E P++E++ K+ N + Sbjct: 2 LKDRIKELRKQHGWTQAELAKKMSVSQQTIGSWEVGRAE-----PNSEALTKLAHLFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 LL + T++ E+ L + Sbjct: 57 TDYLLSNHKTPEWATKEDIIELDKLLESNANM 88 >gi|237751081|ref|ZP_04581561.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229373526|gb|EEO23917.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 222 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 56/224 (25%), Gaps = 18/224 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S K E + + L+ A K GL + + S + ++ Sbjct: 1 MKSEHKKNEKLRNLRLSLGLSQKKFAEKLGLTRSLIAAYETEKNP-----ISNNVLLRVS 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--- 119 + +L P N + Sbjct: 56 EIFGIKNEYFESEMTPQEAFEKYSINPADILKINPFDDMVCCVYESLEDYAGRNPLVKAN 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + K +++ P + GDILI+ + GD ++ K + Sbjct: 116 LKIQFLSLLFAANTDGNYHFIKLNNSTNEPFAKNGDILIVERQGRAVNGDFIVAKFQESY 175 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-----EMSDIEWIARI 218 I+ + + ++ N + E IE + I Sbjct: 176 IIFQYFVVGIDEAL-FKGSN----NIEIKLKGNEREQIEILGII 214 >gi|330954514|gb|EGH54774.1| peptidase S24, S26A and S26B [Pseudomonas syringae Cit 7] Length = 147 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M GD+L+++ + GD ++ I + L RG Sbjct: 45 EPHAYLARIEDQGMQGGGMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDV 102 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S N YP V + D+ + + Sbjct: 103 VILESQNPDYPPLRVTDNDDLIILGVV 129 >gi|295094537|emb|CBK83628.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 248 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 49/213 (23%), Gaps = 31/213 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I + + + +T S LA + + + G+ + P + + I Sbjct: 1 MQQQYDIGKRLREVMAERGVTISQLAELTDVSEDTI----KAIRSGKTKSPGIQLMISIA 56 Query: 63 AATNETICQLLDLP-----FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115 A T+ L + P+ + + Sbjct: 57 DALGCTMDGFLHRRSLTDEELYLLQKYRTLNIHGKRMVMLMADSEDHMQKKLPSADAYRA 116 Query: 116 ------------------NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 + Y D + + P+Y K DI+ Sbjct: 117 KTRRIPCISSTHTLASNSDYSTHATEFIEIPADYF-PNADYCLRLTTNMLHPIYIKDDII 175 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + GD L G + + + G Sbjct: 176 AVEQNFPHF-GDIALFLNENGVEMIRKYTEKDG 207 >gi|113971256|ref|YP_735049.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|114048494|ref|YP_739044.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|117921538|ref|YP_870730.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|113885940|gb|ABI39992.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-4] gi|113889936|gb|ABI43987.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-7] gi|117613870|gb|ABK49324.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. ANA-3] Length = 208 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 28 DIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 82 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + S + + LL FP P Sbjct: 83 SLVDFFSIEASIESEQKVVYRSDELLDIGTGPLEFKLIGRDFPNRAMSVMSETYPPGSDT 142 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + ++ + GD + + + GD Sbjct: 143 GEEMLKHEGEEAAMVIEGKF---ELTVGDEVYI-----LEAGDSYYFNSELPH----RFR 190 Query: 187 SRRGRSIDLMSL 198 + L+S Sbjct: 191 NPFDEPCRLVSA 202 >gi|2231995|gb|AAC45921.1| aldehyde dehydrogenase [Azotobacter vinelandii] Length = 185 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 46/166 (27%), Gaps = 14/166 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 5 DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSP 126 ++ + L + + P + +V P Sbjct: 60 SLMEFFSLDLEAEASAPVVYRAAEQAELSRGLLSMRLIGKDHPDRALTFLSVTYPPGADS 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + ++ + L + + GD Sbjct: 120 GEALLLRDGEEAGILVEGRLEL--------QVGEQRYTLESGDTYY 157 >gi|313205461|ref|YP_004044118.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444777|gb|ADQ81133.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 266 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 5/91 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + S K+I + I + + L+ LA+ G S + + R + K+ Sbjct: 4 TLSQKQIGQRITELRKTKGLSQEELAKSIGFSRPSLAQVELGN-----RNIGILEMQKLA 58 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ ++ F+ + + + Sbjct: 59 TVLGFSLDDIMSENFNSKHELKHETAMPKEI 89 >gi|146283672|ref|YP_001173825.1| ultraviolet light resistance protein A [Pseudomonas stutzeri A1501] gi|145571877|gb|ABP80983.1| ultraviolet light resistance protein A [Pseudomonas stutzeri A1501] Length = 143 Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%) Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 F S P G + + I A + SM+ + DILI Sbjct: 17 PFFSFCVPAGFPSPAQDHMEGSISLDELMNIRA--PHTYLARADGESMIQVGIFDRDILI 74 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ + G+ ++I + + K+ G + L S N +P + S+ ++ + Sbjct: 75 IDRGREAEKGE-VIIAALNNEPLVKIFDR-AGSQVILRSANPKFPPRYLLESEELYVWGV 132 Query: 219 LWAS 222 + S Sbjct: 133 VSYS 136 >gi|24372846|ref|NP_716888.1| transcriptional regulator, putative [Shewanella oneidensis MR-1] gi|24346951|gb|AAN54333.1|AE015570_7 transcriptional regulator, putative [Shewanella oneidensis MR-1] Length = 182 Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + S + + LL +P P Sbjct: 57 SLVDFFSIEASSECEQKVVYRSDELLNIGTGPLEFKLIGRDYPNRAMSVMSETYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + ++ + GD + + + GD Sbjct: 117 GEEMLKHEGEEAAMVVEGRF---ELTVGDEVYI-----LEAGDSYYFNSELPH----RFR 164 Query: 187 SRRGRSIDLMSL 198 + L+S Sbjct: 165 NPFDEPCRLVSA 176 >gi|66394691|ref|YP_240858.1| ORF021 [Staphylococcus phage X2] gi|62636915|gb|AAX92026.1| ORF021 [Staphylococcus phage X2] Length = 200 Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 37/209 (17%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIF 59 M H + + E + + + GL T+ + +R + E+I Sbjct: 1 MDKEKH------LKHLMEMKSGSVKAFSEDIGLAYTTVRSILERGVFNAK-----VENII 49 Query: 60 KILAATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPT-- 111 KI N ++DL + + ++ +L + S G Sbjct: 50 KICKGLNIKPENIMDLNDTIISESITTLIKLTPPRQENVLNYANSQLDEQNSKGDNVVDI 109 Query: 112 ----------------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 E + D K SM P+++ G+ Sbjct: 110 NSYKQDKTPVNVNGCVSAGVGERLHDETLFTEMVKAPVPPHDLALKVNGDSMEPMFKDGE 169 Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 I+ + + G + + K Sbjct: 170 IIFVEKTHNIKNGQIGIFII-EEEAYVKK 197 >gi|258539030|ref|YP_003173529.1| hypothetical protein LC705_00839 [Lactobacillus rhamnosus Lc 705] gi|257150706|emb|CAR89678.1| Putative protein without homology [Lactobacillus rhamnosus Lc 705] Length = 72 Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 168 GDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 GD + + + K L + + I L SLN YP ++ DI I ++ Sbjct: 19 GDLGVGRVADEGVTFKQLSRDYQQKKIVLHSLNDKYPDRCLDPEDISIIGVVI 71 >gi|323958898|gb|EGB54574.1| peptidase S24 [Escherichia coli H489] Length = 173 Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + V H+ + + SM GD+L+++SA + GD ++ Sbjct: 64 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 120 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K + L +N + + +++ + Sbjct: 121 SMQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 162 >gi|74317534|ref|YP_315274.1| hypothetical protein Tbd_1516 [Thiobacillus denitrificans ATCC 25259] gi|74057029|gb|AAZ97469.1| hypothetical protein Tbd_1516 [Thiobacillus denitrificans ATCC 25259] Length = 120 Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 ++ SM+P + +G+I+++ + V G ++ + + + ++ R Sbjct: 24 SEPYALMVLGDSMMPEFEEGEIIVVEPSGLVKDGSYVV-AYVNDEYIFRQIVKRDDG-WM 81 Query: 195 LMSLNCCYPVDTVEMSDI 212 L +N Y V+ D+ Sbjct: 82 LKPVNPLYENIPVDDLDV 99 >gi|116751481|ref|YP_848168.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700545|gb|ABK19733.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 432 Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 57/170 (33%), Gaps = 19/170 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + ++ + LA+ G+ P++ ++ + I +PS ++ K+ + Sbjct: 252 DLGLRLKELRTKRGISQTELAKSVGVTPSTISQVESNLI-----YPSLPALMKMAEVLSV 306 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT----VGVPEI 123 I + + E + F G + + P + + + +P Sbjct: 307 DISSFFQERLAGKKKFVFSAMESLQVKFADFPEGSIYARALTPIDSDFKVEPYLIEIPSE 366 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLL 172 ++ + ++ + ++ + + L V GD + Sbjct: 367 KTVFSHFFSHKGEEIGYLISGEL---------QVRLEKEVHTVRAGDTVY 407 >gi|301310367|ref|ZP_07216306.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300831941|gb|EFK62572.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 213 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 56/230 (24%), Gaps = 36/230 (15%) Query: 3 SFSHKKIWEAID-------RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + ++ E + E L+ +A+K G + S K + W T Sbjct: 1 MTTKERFVEYLKFKGFGQTAFEESAGLSRGAIAKKTGFNADSIEKIAMACPDLNINWLVT 60 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + + + + K + F D + P Sbjct: 61 GL---------GGMLSHSNNEEDEPKISYTKGVPYYNVDFIGGFDLVLNDQTINPEY--- 108 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLL 172 SM P GD++ L + G+ Sbjct: 109 -----------LIDFKKYNDATCWCNVTGHSMEPEINHGDMIALKKIEDRSFLPLGEVYA 157 Query: 173 IKPRTGDIVAKVL-ISRRGRSIDLMSLN--CCYPVDTVEMSDIEWIARIL 219 I K L + + L+ N Y + I I ++L Sbjct: 158 IVTTNDMRTIKRLGAGKTDDTYTLVPSNKSPEYSTQQLPARMIRTIFQVL 207 >gi|330831530|ref|YP_004394482.1| putative transcriptional regulator [Aeromonas veronii B565] gi|328806666|gb|AEB51865.1| Putative transcriptional regulator [Aeromonas veronii B565] Length = 180 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 60/192 (31%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + L+ LA+++G+ ++ ++ + PS S+ K+L Sbjct: 2 DIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQV-----SPSVASLRKVLEGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ G + ++P L P S V +P Sbjct: 57 SLASFFTEETEMGTEVIFRAADMPDLGTHPISYRLVGHSRANRAIGMLQEV-LPPGADTG 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + + ++ + + + + +L GD RT + Sbjct: 116 DDMLSHEGEECGIVIKGEVEVTVGEQIYLLGA--------GDGYYFDSRTPH----RFRN 163 Query: 188 RRGRSIDLMSLN 199 + L+S N Sbjct: 164 SGEQECVLISAN 175 >gi|302184832|ref|ZP_07261505.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae 642] Length = 139 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213 D+L+++ + GD ++ I + L RG + L S N YP V + D+ Sbjct: 59 DMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDVVILESQNPDYPPLHVTDNDDLI 116 Query: 214 WIARI 218 + + Sbjct: 117 ILGVV 121 >gi|187736281|ref|YP_001878393.1| peptidase S24 and S26 domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187426333|gb|ACD05612.1| peptidase S24 and S26 domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 268 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 45/174 (25%), Gaps = 17/174 (9%) Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 K +R E P + + + E ++ P Sbjct: 84 KYERAASEKGV--PLRQWLTDLADEAAEER-----QLRPMHSPLVPLVRQFPSHAGHARR 136 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 G G+ + VP + + + + SM PL G ++I+ Sbjct: 137 EYSTQIIGNIAAGSLAESDTVPSTIYMERP---LGKNEYVVRVEGKSMEPLIPDGSLVIM 193 Query: 160 NSAI--QVNCGDRLLIKPRTGDIVAKVLISRRG-----RSIDLMSLNCCYPVDT 206 + ++ + K LI R+ L +N + T Sbjct: 194 RRHTAPPIPKPGTIVEYNDGRGVTLKKLIRRKNAETGKTEYVLQPINPAFKDIT 247 >gi|254246992|ref|ZP_04940313.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184] gi|124871768|gb|EAY63484.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184] Length = 189 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 60/194 (30%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 10 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + R + E+P L + + P + Sbjct: 65 SLAEFFTFELVESRAVVSRRDEMPNLGNESLAFHLVGANVKDRNMCILREIYQP-LADTG 123 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + L + +L+ GD + R + Sbjct: 124 PEMLVHAGHEGGVVVSGRLELTV--DSATWLLDP------GDGYYFESRLPH----RFRN 171 Query: 188 RRGRSI-DLMSLNC 200 I +++S N Sbjct: 172 PSAELICEVVSANS 185 >gi|107023923|ref|YP_622250.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691009|ref|YP_836632.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734344|ref|YP_001766291.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105894112|gb|ABF77277.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116649098|gb|ABK09739.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169817586|gb|ACA92169.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 183 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 60/194 (30%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + R + E+P L + + P + Sbjct: 59 SLAEFFTFELVESRAVVSRRDEMPNLGNESLAFHLVGANVKDRNMCILREIYQP-LADTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + L + +L+ GD + R + Sbjct: 118 PEMLVHAGHEGGVVVSGRLELTV--DSATWLLDP------GDGYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 I +++S N Sbjct: 166 PSAELICEVVSANS 179 >gi|283138937|gb|ADB12540.1| hypothetical protein [uncultured bacterium 9F08] Length = 125 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 2/69 (2%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM P + +GD++++ G ++ + + Sbjct: 28 DKEPYVLMVLGDSMEPEFNEGDVIVIEPGANYRDGSYIIAYHNDE--YIFRQLRVINDNF 85 Query: 194 DLMSLNCCY 202 L LN Y Sbjct: 86 YLTPLNPNY 94 >gi|225830|prf||1314257A phage 16-3 repressor ORF C Length = 197 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 50/200 (25%), Gaps = 47/200 (23%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS---------------KRFG 45 M+ + + + E +T + LAR+ G + N + Sbjct: 8 MSRLT-----DTLAAKLEEAGITQAELARRVGQSQQAINNLFAAVRRRQWFARLARELGI 62 Query: 46 IEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 E + R TE+ T+ + R ++ L P + G + Sbjct: 63 DEQQMRQMMTEAGRDPEKVTSLAGLRKYRAVLPSPREPFPIIRQQEHLPRPNATIGEETN 122 Query: 106 S--------------------GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 G+ + V P Sbjct: 123 MEPRKKKLLPVLGEAVGGEDGEYIFNGSVLDYVDCPPSLENVP-------NAYAVYIDGE 175 Query: 146 SMLPLYRKGDILILNSAIQV 165 SM+P +R G+ + ++ Sbjct: 176 SMVPRFRPGETVWVHPTKPP 195 >gi|330878565|gb|EGH12714.1| RulA protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967768|gb|EGH68028.1| RulA protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 147 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M +GD+L+++ + GD ++ + + L RG Sbjct: 45 EPHVYLARVEDEGMRGCGMSRGDMLVVDRSQYAEHGDIVVASLNARQL-CRRLH-MRGHV 102 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S N YP V + D+ + + Sbjct: 103 VILQSENADYPPLHVTDNDDLIILGVV 129 >gi|229918124|ref|YP_002886770.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469553|gb|ACQ71325.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 179 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I R+ + LT LA + L ++ +R PS E++F +L Sbjct: 2 EVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLS-----SPSLETLFDLLNVLGS 56 Query: 68 TICQLLDLP 76 + + D Sbjct: 57 SPKEFFDEE 65 >gi|254251221|ref|ZP_04944539.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] gi|124893830|gb|EAY67710.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] Length = 189 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 10 EVAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRV-----SPSVGSLKKLLECIPM 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + RT + E+P L V P Sbjct: 65 SLAEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGAGVKDRNMCIMREVYQP-HADTG 123 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + A + L + G +L+ GD + R + Sbjct: 124 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 171 Query: 188 RRGRSI-DLMSLNC 200 + +++S N Sbjct: 172 PSAEHVCEVVSANS 185 >gi|237797707|ref|ZP_04586168.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020557|gb|EGI00614.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. oryzae str. 1_6] Length = 146 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M GD+L+++ + GD ++ I + L RG Sbjct: 44 EPHVYLARVEDEGMRDAAMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGEV 101 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S N YP V + D+ + + Sbjct: 102 VILESENADYPPLRVTDNDDLIILGVV 128 >gi|288961553|ref|YP_003451863.1| transcriptional regulator [Azospirillum sp. B510] gi|288913833|dbj|BAI75319.1| transcriptional regulator [Azospirillum sp. B510] Length = 188 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + ++ E+H L+ LA++AG+ + + ++ PS S+ K+L Sbjct: 4 DVGARLKQIREQHGLSQRALAQRAGVTNGTISLIEQNRS-----SPSVSSLRKVLQGIPM 58 Query: 68 TICQLLDLPFSDGRTT 83 ++ + Sbjct: 59 SLAEFFSSDDLPPPEQ 74 >gi|307292241|ref|ZP_07572105.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496747|gb|EFM66300.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 418 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 6/146 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + EAI E T LA K G+ + +K ++ R S E + Sbjct: 1 MNQVNQRDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RRLSAEKLNL 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119 +L + E I + + + + L+ F+ + P G V Sbjct: 56 VLDSLQEEIVPVNRVLIDYLTIHFFSNQHLKLIEEIIGMPIERFEELDYAPKGYIGQYVW 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145 I ++ ++ Q Sbjct: 116 NQVITIRYSIDDTVKGTVMEFSGQGC 141 >gi|126207981|ref|YP_001053206.1| hypothetical protein APL_0497 [Actinobacillus pleuropneumoniae L20] gi|126096773|gb|ABN73601.1| hypothetical protein APL_0497 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 88 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG------RSIDLMSLNC 200 M P + GDI+I++ ++ + G+ + + K + +L+ LN Sbjct: 1 MEPEFIAGDIVIIDPRVEPHAGEFVAAINGDYEATFKKYRPLEDLDEYGRQHFELVPLNP 60 Query: 201 CYPVDTVEMSDIEWIARIL 219 + + +I I ++ Sbjct: 61 DWHSMSSLKQEIRIIGTMV 79 >gi|120599870|ref|YP_964444.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|146292194|ref|YP_001182618.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120559963|gb|ABM25890.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. W3-18-1] gi|145563884|gb|ABP74819.1| transcriptional regulator, XRE family with cupin sensor [Shewanella putrefaciens CN-32] Length = 182 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + + + + LL +P P Sbjct: 57 SLVDFFSIEATSECEQKVVYRSDELLDIGTGPLEFKLIGRDYPNRAMSVMSETYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + Q ++ + GD + + + GD Sbjct: 117 GEEMLKHQGEEAAMVIEGKF---ELTVGDEVYI-----LETGDSYYFNSELPH----RFR 164 Query: 187 SRRGRSIDLMSL 198 + L+S Sbjct: 165 NPFDEPCRLISA 176 >gi|167754509|ref|ZP_02426636.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|237733852|ref|ZP_04564333.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705341|gb|EDS19920.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|229383190|gb|EEO33281.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 242 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + +++ ++ L+ LA + G+ S +K + P E I +I ++ Sbjct: 5 DNLNKYRKQKGLSQEELAFRLGVSRQSVSKWESGQST-----PELERIIEIADLFGISLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 +L+ +D T +++E + + F G P Sbjct: 60 ELIGHESNDYVTVDREELRSVVRHLFTYEYKSKFKIGNVP 99 >gi|302523093|ref|ZP_07275435.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302431988|gb|EFL03804.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 191 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 6/137 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R LT S LA AG+ ++ +R PS ++ K+ A Sbjct: 12 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGN-----PSYTTLIKLADALRVP 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPH 127 + D + G +P S Sbjct: 67 VGAFFDGSEDAWEPAAVVRAGGRRRLSLSDEGLVYELLTPSLHGRLGMMRAEIPPGYSNA 126 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ + Sbjct: 127 LAPHRHEGEEVMLLLEG 143 >gi|318057227|ref|ZP_07975950.1| hypothetical protein SSA3_04771 [Streptomyces sp. SA3_actG] gi|318075235|ref|ZP_07982567.1| hypothetical protein SSA3_00560 [Streptomyces sp. SA3_actF] Length = 210 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 6/137 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R LT S LA AG+ ++ +R PS ++ K+ A Sbjct: 31 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGN-----PSYTTLIKLADALRVP 85 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPH 127 + D + G +P S Sbjct: 86 VGAFFDGSEDAWEPAAVVRAGGRRRLSLSDEGLVYELLTPSLHGRLGMMRAEIPPGYSNA 145 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ + Sbjct: 146 LAPHRHEGEEVMLLLEG 162 >gi|149920158|ref|ZP_01908630.1| transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149818924|gb|EDM78363.1| transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 113 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +H+++ + + L+ LA KA + + + ++ G PS ++ K+ Sbjct: 12 LTHEELGDRVRERRRELGLSQEKLAEKAQVSKETIGRLEQGGGT-----PSLFTVRKVAN 66 Query: 64 ATNET 68 A ET Sbjct: 67 ALGET 71 >gi|320089228|emb|CBY98981.1| K03503 DNA polymerase V [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 79 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD+++++ A + G+ ++ + G+ K L I L+ +N YP Sbjct: 6 LHSGDLMVVDKAEKPLQGNIVIAETD-GEFTVKRLQLTP--RIALLPMNPAYPTLY--PE 60 Query: 211 DIEWIARI 218 D++ + Sbjct: 61 DLQIFGVV 68 >gi|223985675|ref|ZP_03635723.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] gi|223962366|gb|EEF66830.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] Length = 283 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + ++ + I + + T L K G+ + +K +R +P + + Sbjct: 11 MQNLTEERTGQLIRELRLKAGWTQKELGMKIGISDKAISKWERGLS-----FPDITLLPR 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKE 87 + + ++ +++ ++ Sbjct: 66 LAEVFHVSVGEIISGQQLSEPALNPEQ 92 >gi|153954565|ref|YP_001395330.1| hypothetical protein CKL_1947 [Clostridium kluyveri DSM 555] gi|219855059|ref|YP_002472181.1| hypothetical protein CKR_1716 [Clostridium kluyveri NBRC 12016] gi|146347423|gb|EDK33959.1| Phage-related protein [Clostridium kluyveri DSM 555] gi|219568783|dbj|BAH06767.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 261 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + E NLT LA K G+ P + + + R PS E++ KI A + Sbjct: 2 NVGAKIKEIRESKNLTQKQLAEKIGVTPVTITRYENN-----KREPSIETLNKIAKALDV 56 Query: 68 TICQ 71 TI Sbjct: 57 TIND 60 >gi|323189774|gb|EFZ75052.1| repressor protein C2 domain protein [Escherichia coli RN587/1] gi|327250312|gb|EGE62031.1| repressor protein C2 domain protein [Escherichia coli STEC_7v] Length = 86 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 M+ YR GD++ ++ + GD ++ TG+ K LI + L +LN +P Sbjct: 1 MIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEP 59 Query: 206 TVEMS-DIEWIARIL 219 ++++ + I ++ Sbjct: 60 YIKINGNCSIIGTVI 74 >gi|320335423|ref|YP_004172134.1| peptidase S24/S26A/S26B, conserved region [Deinococcus maricopensis DSM 21211] gi|319756712|gb|ADV68469.1| Peptidase S24/S26A/S26B, conserved region [Deinococcus maricopensis DSM 21211] Length = 154 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 9/117 (7%) Query: 108 VFPTGNKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSA 162 G + R Y SM G +++++ Sbjct: 21 FISAGVPLDATPFERLGRLTVPRAYRRPG-MFAFAVTGDSMTAPGGAGLPHGAYVLVDTH 79 Query: 163 IQVNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + G + VAK L RGR + S N YP + D+ + RI Sbjct: 80 DLITQTGHVYAFCLPGGEYVAKRLRLHRGRP-AMYSDNPTYPPAPLTP-DVRRVGRI 134 >gi|218561643|ref|YP_002394555.1| Protein impA [Contains: Protein impA'] (modular protein) [Escherichia fergusonii ATCC 35469] gi|218350157|emb|CAQ86919.1| Protein impA [Contains: Protein impA'] (modular protein) [Escherichia fergusonii] Length = 235 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + V H+ + + SM GD+L+++SA + GD ++ Sbjct: 126 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 182 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K + L +N + + +++ + Sbjct: 183 SMQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 224 >gi|152973662|ref|YP_001338702.1| putative ImpA protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|294496737|ref|YP_003560430.1| putative ImpA protein [Klebsiella pneumoniae] gi|150958444|gb|ABR80472.1| putative ImpA protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|293339446|gb|ADE44000.1| putative ImpA protein [Klebsiella pneumoniae] Length = 143 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 6/104 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + V H+ + + SM GD+L+++ A + GD ++ Sbjct: 34 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMSDGSLYNGDLLVVDCAEKPRHGDIVV-A 90 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K + L +N + + D++ + Sbjct: 91 SVQGEFTVK--RLLLTPRLTLQPMNAAWSPIYPDPDDLDIFGVV 132 >gi|167588944|ref|ZP_02381332.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 183 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVAERLRYVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + RT + E+P L V P Sbjct: 59 SLAEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGAGVKDRNMCIMREVYQP-HADTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + A + L + G +L+ GD + R + Sbjct: 118 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 + +++S N Sbjct: 166 PSAEQVCEVVSANS 179 >gi|313669568|ref|YP_004049993.1| peptidase S24/S26A/S26B [Sulfuricurvum kujiense DSM 16994] gi|313156765|gb|ADR35440.1| Peptidase S24/S26A/S26B, conserved region [Sulfuricurvum kujiense DSM 16994] Length = 124 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 1/86 (1%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 ++ K SM P+ + +++ + + + + + + K Sbjct: 34 KSSLFVIKVDGKSMQPVIKDRALVVADLSQKKLEDGGIYLVYYDNKMWIKQAKEILTGM- 92 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219 L+S+N Y + +++ +A+ + Sbjct: 93 TLVSINQAYSHLVYQEAEVRVVAKAV 118 >gi|299800882|gb|ADJ51146.1| SOS mutagenesis and repair protein D [Klebsiella pneumoniae] Length = 227 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + V H+ + + SM GD+L+++SA + GD ++ Sbjct: 118 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 174 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K + L +N + + +++ + Sbjct: 175 SMQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 216 >gi|220928578|ref|YP_002505487.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998906|gb|ACL75507.1| plasmid maintenance system antidote protein, XRE family [Clostridium cellulolyticum H10] Length = 230 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 61/231 (26%), Gaps = 28/231 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA--- 64 +I + I+++ + +TP LAR G+ + + K L Sbjct: 3 RIGQEINKLRLKKGMTPKQLARALGVSEKFVLDIESGKKIVS--DDMIGRVSKALDFELG 60 Query: 65 -----------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 T E + + Sbjct: 61 PIGLFASDDKLTPGNGNDANVRSVKKVAPIVSNEPVQQVWDDAFGNILKTVPVYDYKMDR 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + +P ++ G YA + KGD Q+ D + + Sbjct: 121 IIDKKLLPIEKNRVEG-YAKEKVFYLDIEDTDMSGFRIFKGDRAFGILENQI-DKDGIYL 178 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYP-----VDTVEMSDIEWIARIL 219 G+ + + G + L+ Y +TV +I+ IAR++ Sbjct: 179 IEYNGERAVRQVKKLHGNKLLLV-----YNRGTLITETVGTKEIKVIARLI 224 >gi|255652577|ref|ZP_05399479.1| putative phage DNA-binding protein [Clostridium difficile QCD-37x79] Length = 278 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 13/150 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + +T LA KAG+ + +R R P+ + + K+ A + + Sbjct: 3 IGENIKTFRKDRRMTQEQLAEKAGISRVALGNYER-----EERVPNLDILEKLATALDTS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +++L EI L + K + I +PH+ Sbjct: 58 TDIIMNLHKF-------SLDEIHELNITDGNDIPLTEEKYAYIKEKIDFYTSEIIEAPHH 110 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 + + + + +I Sbjct: 111 ALESYYQRAFMYAILGD-YENAIADYTKVI 139 >gi|99081161|ref|YP_613315.1| putative phage repressor [Ruegeria sp. TM1040] gi|99037441|gb|ABF64053.1| hypothetical protein TM1040_1320 [Ruegeria sp. TM1040] Length = 211 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 31/224 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M AI + +A AG+ +G+++ + + + Sbjct: 1 MQQTFRDAFLAAIKT----TGKSMRQVALDAGVSYEQLKNL----SQGKSKSTNVDDAIR 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I A+ + T + + +P G V Sbjct: 53 IAASFGTNL------ENFLEGNTAPSVRPTISIAGTVGAGAQVPVFDAYPKGGGP-QVEC 105 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-----IQVNCGDRLLIKP 175 P SPH + + SM P+Y D+L + G R + + Sbjct: 106 PPGLSPHG--------IVAVEVEGDSMEPVYSDRDLLFYSRNGHDSVPSDIIGHRCVCED 157 Query: 176 RTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G K + + L+SLN ++W AR+ Sbjct: 158 EDGMGWVKQVKAGDEPGLFHLISLNPGANNIW--NVRLKWAARV 199 >gi|290956608|ref|YP_003487790.1| UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] gi|260646134|emb|CBG69227.1| putative UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] Length = 509 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I + I + T S LA G ++ N+ +R S E I +I A Sbjct: 7 ERIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|226946801|ref|YP_002801874.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ] gi|226721728|gb|ACO80899.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ] Length = 182 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 41/138 (29%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSP 126 ++ + L + + P + +V P Sbjct: 57 SLMEFFSLDLEAEASAPVVYRAAEQAELSRGLLSMRLIGKDHPDRALTFLSVTYPPGADS 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + ++ + Sbjct: 117 GEALLLRDGEEAGILVEG 134 >gi|325977288|ref|YP_004287004.1| HTH-type transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177216|emb|CBZ47260.1| Uncharacterized HTH-type transcriptional regulator Mb0023 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 210 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/161 (11%), Positives = 48/161 (29%), Gaps = 9/161 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + ++ ++ +T + LA G+ + +K + + + + I + Sbjct: 1 MNDYLIQNFGKNVAQLRKKKGVTQAELAEVIGVKKAAISKIELGTS--YPTFANLDKIAR 58 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFPTGNKWN 116 AT + + + + + S + T + + Sbjct: 59 YFKATPNELFGTSTDIELERAVIKTDKYSEKAEKIIRAVSKIEEYSEKADRILYTLERID 118 Query: 117 TVGVPEIRSP---HNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 + S + IY + + PLYR Sbjct: 119 ELERILDSSQDYSNEVIYILDRLTYAPIMETDKGEPLYRDD 159 >gi|117165275|emb|CAJ88837.1| putative transcriptional regulators [Streptomyces ambofaciens ATCC 23877] Length = 192 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/159 (9%), Positives = 46/159 (28%), Gaps = 10/159 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESIFKI 61 ++ + + + LA ++G+ ++ ++++R + ++ ++ Sbjct: 14 RLAARLAELRAERGWSLGELAERSGVSRSTLSRAERAETSPTASLLNRLCAVYGRTMSRL 73 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L+ L+ + P +G G G G P Sbjct: 74 LSEVEAEPALLVRAAEQPRWEDRSAGFVRRSVSPPHAGLRGELVEGRLAAGADIAY-DRP 132 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + ++ ++ + + GD L + Sbjct: 133 PVPGLEQHVWVLEG---ALEVTAQDVEHHLGTGDCLRMR 168 >gi|83952999|ref|ZP_00961721.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] gi|83841967|gb|EAP81135.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] Length = 183 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 35/140 (25%), Gaps = 7/140 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + E L+ LA KAGL + + ++ PS S+ +L A Sbjct: 2 DIGQRLRSIREERGLSQRELATKAGLTNGTISLIEKNKT-----SPSVASLKSLLDAIPI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125 ++ + + P + P Sbjct: 57 SMAEFFSTLEDTQSPKVFYRESEFTKVSPTYDGQVSLRQLGNAEQHSLQVLHETYPPGAD 116 Query: 126 PHNGIYAIQTQDTRHKTQDT 145 + + ++ Sbjct: 117 TGPELLVHEGEEAGVVISGE 136 >gi|261208780|ref|ZP_05923217.1| replication initiation factor [Enterococcus faecium TC 6] gi|289565535|ref|ZP_06445982.1| replication initiation factor [Enterococcus faecium D344SRF] gi|294614440|ref|ZP_06694356.1| replication initiation factor family [Enterococcus faecium E1636] gi|294617958|ref|ZP_06697563.1| putative phage replication protein [Enterococcus faecium E1679] gi|260077282|gb|EEW65002.1| replication initiation factor [Enterococcus faecium TC 6] gi|289162617|gb|EFD10470.1| replication initiation factor [Enterococcus faecium D344SRF] gi|291592748|gb|EFF24341.1| replication initiation factor family [Enterococcus faecium E1636] gi|291595767|gb|EFF27055.1| putative phage replication protein [Enterococcus faecium E1679] Length = 410 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 6/146 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + EAI E T LA K G+ + +K ++ R S E + Sbjct: 1 MNQVNQHDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RQLSEEKLNL 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119 +L + E + + + + + L+ F+ + P G V Sbjct: 56 VLDSLQEEVVPVNRVLIDYLTIHFFSNQHLKLIEEIIEMPIERFEELDYAPKGYIGQYVW 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145 I ++ A++ Q Sbjct: 116 NQVITIRYSIDDAVKGTVMEFSGQGC 141 >gi|302342745|ref|YP_003807274.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301639358|gb|ADK84680.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 238 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 13/226 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E L S +A G+ + + +R + Sbjct: 12 LGERFKSFRADLGLNQSNMASLLGISQSMLSLVERGEAPMPFEAVCALLGRFPALDLRDL 71 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPH 127 + + D R + + G+ ++ + H Sbjct: 72 LLGDVTNLMVDSRDSSARASAATAGLIGDDYLAVPLVGDRLAVGDDCFSWAKARRLLLIH 131 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPR---TGDIVAK 183 + + + D +M P G I+I++ R + R G + + Sbjct: 132 RRDLGARQRFVAIRVADEAMRPTIPAGAIVIVDLDERDPRRRQRHVWAIRADADGLLAVR 191 Query: 184 VLISRRGR-SIDLMSLN-CCYPV---DTVEMSDIEWIARIL--WAS 222 L + + R ++S + +P T + ++ + R++ W S Sbjct: 192 RLQALKNRPGFMIVSDDFDNHPPQIAWTSDAREL-ILGRVIRLWRS 236 >gi|313905283|ref|ZP_07838650.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469894|gb|EFR65229.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 184 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K I I + +R+ LT LA +A L ++ +R PS E++ ++ Sbjct: 7 NKDIGRRIKDLRQRNGLTQQELADRAELTKGFISQLERGLG-----SPSVETLMHMIEIL 61 Query: 66 NETICQLLDLPFSD 79 Sbjct: 62 GSNPADFFKDEGEQ 75 >gi|291288944|ref|YP_003517447.1| UmuD [Klebsiella pneumoniae] gi|290792076|gb|ADD63402.1| UmuD [Klebsiella pneumoniae] Length = 148 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + V H+ + + SM GD+L+++SA + GD ++ Sbjct: 39 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 95 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K + L +N + + +++ + Sbjct: 96 SVQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 137 >gi|156933444|ref|YP_001437360.1| hypothetical protein ESA_01262 [Cronobacter sakazakii ATCC BAA-894] gi|156531698|gb|ABU76524.1| hypothetical protein ESA_01262 [Cronobacter sakazakii ATCC BAA-894] Length = 89 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWI 215 ++++ ++ D ++ G+ K L++ L + N YP + D++ + Sbjct: 1 MLVDFSLHAKHNDIMV-ASIGGEFTIKRLVTYP--VAQLRAENPAYPPIAVYDADDLDIV 57 Query: 216 ARIL 219 ++ Sbjct: 58 GVVI 61 >gi|159038022|ref|YP_001537275.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916857|gb|ABV98284.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 7/139 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + +T + LA G+ ++ ++ + R PS E + I AA Sbjct: 11 EIGPRLKQARAQRGVTLAELAETTGISKSTLSRLEAGQ-----RKPSLELLLPIAAAHRI 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ +P S + +++ P + P+ + Sbjct: 66 PLDKLVGVPQSGDPRVRLQPRKVNGRTVLPLTQHPGSLQAWKVIIPVDQSTPEPKTHEGY 125 Query: 128 NGIYAIQTQDTRHKTQDTS 146 +Y + + Sbjct: 126 EWLYVLAGRLRL--VLGDH 142 >gi|91779152|ref|YP_554360.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91691812|gb|ABE35010.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 189 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 62/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + ++H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 10 EVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + R+ + ++P L S V P + Sbjct: 65 SLAEFFTFEVEVERSVVSRRADMPNLGNESIEFYLAGSSVKDRNMGILREVYQP-LSDTG 123 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + L + G +L+ GD + R + Sbjct: 124 PEMLEHEGHEGGVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFRN 171 Query: 188 RRGRSI-DLMSLNC 200 + +++S N Sbjct: 172 PSAEHLCEIVSANS 185 >gi|117676113|ref|YP_863689.1| putative prophage repressor [Shewanella sp. ANA-3] gi|117614937|gb|ABK50390.1| putative prophage repressor [Shewanella sp. ANA-3] Length = 244 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + + SM + GDILI++ + + GD ++I + V KVL Sbjct: 149 ESTFVGRARGESMTGVGIHSGDILIVSRQLTPSSGD-VIIAMYNEEFVCKVLDLSNS--- 204 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARILWAS 222 L+S N + ++ + D W ++ AS Sbjct: 205 RLLSANDDFEPVSIRLDDRFWCEGVVPAS 233 >gi|239943369|ref|ZP_04695306.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989822|ref|ZP_04710486.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291446837|ref|ZP_06586227.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349784|gb|EFE76688.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 213 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 44/135 (32%), Gaps = 10/135 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + RH +T + LA + G++ ++ ++ + G R P+ E + + Sbjct: 24 VGPRLRELRRRHGMTLAELAERTGINESTLSRLE-----GGTRKPTLELLLPLAEVHAVP 78 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF---PTGNKWNTVGVPEIRS 125 + +L+ P + + L + P G + P+ Sbjct: 79 LDELVGAPRTGDPRIHLRPVTRDGLTYVPLSRPGGVQAHKLLIRPSPAGTE--PTLRTHE 136 Query: 126 PHNGIYAIQTQDTRH 140 +Y + + Sbjct: 137 GFEWLYVLAGRLRLI 151 >gi|116006845|ref|YP_788028.1| ImpA UV protection protein [Escherichia coli] gi|115500700|dbj|BAF33931.1| ImpA UV protection protein [Escherichia coli] Length = 145 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRPALEPVSDSP--ELRTLYPENICIFGIV 134 >gi|150016491|ref|YP_001308745.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902956|gb|ABR33789.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 123 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I E I + E NL LA AG+ + ++ + R P E I K+ N Sbjct: 2 KTIGEKIQILREERNLKQKELAELAGITEATLSRYENG-----KREPKGEIISKLANVLN 56 Query: 67 ET 68 + Sbjct: 57 VS 58 >gi|255013810|ref|ZP_05285936.1| hypothetical protein B2_07877 [Bacteroides sp. 2_1_7] Length = 226 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 52/227 (22%), Gaps = 30/227 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + E ++ +++GL + +K + G + KIL A + Sbjct: 5 QRIRQYIENKGISKYRFYQQSGLSNGALDKGENIGSD---------KCEKILYAFPDLNS 55 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L E + G + V Sbjct: 56 DWLLTGRGSMLKNNGLELIDNKEDIEKNELPEVNYEYK---GAPYYNVDFIGGFDLVLND 112 Query: 131 YAIQTQDT------------RHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKP 175 SM P GD + L + Sbjct: 113 QTNNPDYYINFPPYNKEGVVWCNITGHSMEPELNNGDFIALKEMTDPIEYLPYGEIYGII 172 Query: 176 RTGDIVAKVLI-SRRGRSIDLMSLN--CCYPVDTVEMSDIEWIARIL 219 K + S R + L+ N Y + ++ I + +L Sbjct: 173 TDNYRTVKRIRMSERKGFVRLIPTNKSPEYGEQEIPINMIRKVFAVL 219 >gi|331668090|ref|ZP_08368942.1| protein ImpA [Escherichia coli TA271] gi|331064604|gb|EGI36511.1| protein ImpA [Escherichia coli TA271] Length = 139 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLSLRPALEPVSDSPEF--RTLYPENICIFGVV 134 >gi|325677861|ref|ZP_08157503.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110415|gb|EGC04589.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 180 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 58/176 (32%), Gaps = 10/176 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I ++ +T LA K G+ + +K + P TE + ++ A Sbjct: 2 DIGENIRNARKKKGMTQEMLAEKMGVSRQAVSKWESGKG-----MPETEKLAELSALLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ + + ++ + + + GS S + P I Sbjct: 57 SADRLIGIRPQEEQSEKGCAVDSRIHICSHDGSITAVLSVRYSKIAAPAKNEPPYILVGV 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + I + T S ++ + + ++ G+R+ ++ K Sbjct: 117 DRTG-IFGEHTVILGWYESEDEAAKELECI----ERAIDDGERIYKLSYFTEVEFK 167 >gi|167946726|ref|ZP_02533800.1| putative prophage repressor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 118 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 + + D SM P + + I+++ A G ++ + G+ + IS L Sbjct: 9 ELYPLQVLDDSMEPEFPEKCIIVIEPAEVCATGAYIIAEVD-GERWFRQYISEGEGKKRL 67 Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219 ++L YP ++ S+ + + I+ Sbjct: 68 VALKPGYPEIDLQGSEFKILGVIV 91 >gi|301646989|ref|ZP_07246825.1| peptidase S24-like domain protein [Escherichia coli MS 146-1] gi|301074834|gb|EFK89640.1| peptidase S24-like domain protein [Escherichia coli MS 146-1] Length = 145 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRPALEPVSDSREF--RTLYPENICIFGVV 134 >gi|222530394|ref|YP_002574276.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457241|gb|ACM61503.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 105 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + E+ L+ S LA+ AG+ ++ + + R P+ + I KI A + Sbjct: 3 DVGKRIKELREKCGLSMSKLAKIAGVGQSTLSYIENGE-----RNPTIDVIIKICNALDI 57 Query: 68 TICQLLDLPFSDGRTTE 84 T+ + + Sbjct: 58 TLVEFFGGEEKPHMESP 74 >gi|218689364|ref|YP_002397576.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218426928|emb|CAR07787.2| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|315298577|gb|EFU57832.1| helix-turn-helix protein [Escherichia coli MS 16-3] Length = 178 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 43/160 (26%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSSTPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH-- 124 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 ++ I Q +G + G Sbjct: 125 VFVIDGQLD-LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163 >gi|192289071|ref|YP_001989676.1| phage repressor [Rhodopseudomonas palustris TIE-1] gi|192282820|gb|ACE99200.1| putative phage repressor [Rhodopseudomonas palustris TIE-1] Length = 263 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 47/199 (23%), Gaps = 13/199 (6%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 + + G + + + +I T L+ Sbjct: 71 EIEKLIGRSIKQYWRYVEGQDVP------LSILLRICEVTGIPESYLVLGQQPSEDKFVH 124 Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 KE+ + + VP Sbjct: 125 KERLETVFVRLLAFQASAGSGASVRE---DEERTVPFANEALERAGVRPQNARLLYAAGD 181 Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPV 204 SM P GD L+ + R+ + ++ K L R + + N YP Sbjct: 182 SMRPTIEDGDPLLADVGDTDIIDGRIYVFSIGDQVLVKRLRRLGSRLLM-RADNRDLYPD 240 Query: 205 -DTVEM-SDIEWIARILWA 221 + V M + I R+ W Sbjct: 241 EEEVPMIEPVRIIGRVKWV 259 >gi|254498607|ref|ZP_05111326.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352147|gb|EET10963.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 212 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 35/228 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +K + E + + + + A K G + + +GR P + Sbjct: 1 MNREIYKIVGERLKSVRMQLGFSRREFADKCGFSAATLQAWE----DGRYPVPKKSMVKY 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + + + + + + + Sbjct: 57 VQTLFDCGLATSPEWFLNGEGLPPRPINKFSMSTIAEKDA-------------------- 96 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI-----LNSAIQVNCGDRLLIKP 175 I N D +MLP Y GD + ++ A + G +IK Sbjct: 97 --ILREINFFETENKNPIITVITDDTMLPFYSVGDYVGGKLVPVDYAERYI-GTFCIIKL 153 Query: 176 RTGDIVAKVLIS-RRGRSIDLMSLN--CCYPVDTVEMSDIEWIARILW 220 TG+ V + L +L+S N PV + ++ IA+++W Sbjct: 154 VTGETVVRKLRPGSEEGRFNLISTNLDTNSPVACLLNCEVAQIAQVIW 201 >gi|167464931|ref|ZP_02330020.1| Transcriptional regulator, xre family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 57 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + R+ ++ ++ LA K + + + +R R+P+ E++ KI Sbjct: 3 ENFGQNVARLRKKKGMSQEELAEKLDVKKQTISNIERGV-----RYPTFENLEKIAQLF 56 >gi|153816388|ref|ZP_01969056.1| hypothetical protein RUMTOR_02640 [Ruminococcus torques ATCC 27756] gi|317500743|ref|ZP_07958960.1| hypothetical protein HMPREF1026_00903 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089779|ref|ZP_08338673.1| hypothetical protein HMPREF1025_02256 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846276|gb|EDK23194.1| hypothetical protein RUMTOR_02640 [Ruminococcus torques ATCC 27756] gi|316897836|gb|EFV19890.1| hypothetical protein HMPREF1026_00903 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403662|gb|EGG83217.1| hypothetical protein HMPREF1025_02256 [Lachnospiraceae bacterium 3_1_46FAA] Length = 245 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 37/247 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI-F 59 MT I I + + N++ LA + P++ + + I Sbjct: 1 MTM-----IRNKIRKRRQELNMSRVQLAEAVQVTPSAIANYENGISYPKPDIFVALMITL 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-----FFDSGVFPTGNK 114 ++ A + +++ L + S G + + Sbjct: 56 EVDANYFYEEYVRNREIAIACKRAITQDEIYALEKYRQLTSSGKKLVRMVIEEEYSRMQQ 115 Query: 115 WNTVGVPEIRSPHNGIYAI------------------QTQDTRHKTQDTSMLPLYRKGDI 156 + P ++ GI AI + + Q P++R GD+ Sbjct: 116 EEWISFPCMKDMGGGIDAICKKRAEYFEFRVRKENMIDGMEFCLQLQTDRYEPVFRNGDV 175 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW-- 214 + L + + + ++ L+ + L +LN V+ D Sbjct: 176 IAL-TEKKAGQNEI--GIFLVNEVYYLRLLYQENEEKKLKALNVLEQDVVVKPKDRFICM 232 Query: 215 ---IARI 218 + ++ Sbjct: 233 GTVLGKV 239 >gi|42523852|ref|NP_969232.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100] gi|39576059|emb|CAE80225.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100] Length = 188 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 17/177 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + ++ LT + LA+ AG+ ++ + PS ++ K+ AA Sbjct: 9 QNLAAQITELRKKRQLTQAALAKLAGVPRSTLTNMESGMGN-----PSLVNLAKVCAALQ 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + +LL P S + K E + G + + + Sbjct: 64 VSFEELLATPRSQTKLIRKDEIPANKKAKGNVTVYKLLPDPI--PGMAIDRMELEVGARM 121 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVA 182 ++ T++ H Q ++++ + ++ GD L + Sbjct: 122 GGIPHSSGTKEYLHCVQG---------QMTVVVSGESFELKPGDVLAFPGDSAHNYV 169 >gi|319938782|ref|ZP_08013146.1| XRE family transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811832|gb|EFW08098.1| XRE family transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 91 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + R L + LA+KAG+ + + +R PS KI E Sbjct: 2 KLENRLKELRARDGLNQTELAKKAGVSRQTVSLIERGEY-----APSVIIALKIAHIFGE 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + + L + ++ + YF Sbjct: 57 NVENVFYLKENSDEKMDENYRFTSSEYFA 85 >gi|310779760|ref|YP_003968092.1| phage repressor [Ilyobacter polytropus DSM 2926] gi|309749083|gb|ADO83744.1| putative phage repressor [Ilyobacter polytropus DSM 2926] Length = 237 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 32/233 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E+++ +A K ++ + R P + I K + A N Sbjct: 6 GKFLIEFMEKNDYKLEYVAEKTNTSFSTIGHYRTG-----RRLPKDDFIEKFIKAFNFNE 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------------FFDSGVFPTGNKWN 116 + ++ + + E L F G G + Sbjct: 61 HEKKNIYDAVLKDRTPPEILDKLERFERYSKIENAKGNARRIDTVKVPLYGTASAGPGYL 120 Query: 117 T--VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK---GDILILNS----AIQVNC 167 + + E P + K + SM + G + + + I+ Sbjct: 121 NLDIELKEFIIPKEDY---REGRFTVKVEGNSMTGPIKSIPCGSVALADPNMCTDIEELI 177 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 G + + K L R I L+S N V ++ R++ Sbjct: 178 GKVCV-FTYNDETFIKQLTVDRQNLIHLVSFNPEEQDIIVLNPKMLKCNGRVV 229 >gi|296274196|ref|YP_003656827.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299] gi|296098370|gb|ADG94320.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299] Length = 119 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 31/86 (36%), Gaps = 3/86 (3%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM P+ ++I + + + + + + + K ++ Sbjct: 31 EKSLFAILVDGKSMEPVINHKAVIIADLSNKKLEDENVYLVYYENKMWVKKYD-LENKTF 89 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219 +S+N + + +I +A+++ Sbjct: 90 --ISINPNFSHLVYKEEEIHLVAKVI 113 >gi|213967337|ref|ZP_03395485.1| RulA protein [Pseudomonas syringae pv. tomato T1] gi|301381696|ref|ZP_07230114.1| RulA protein, putative [Pseudomonas syringae pv. tomato Max13] gi|302059642|ref|ZP_07251183.1| RulA protein, putative [Pseudomonas syringae pv. tomato K40] gi|302131534|ref|ZP_07257524.1| RulA protein, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927638|gb|EEB61185.1| RulA protein [Pseudomonas syringae pv. tomato T1] gi|331019559|gb|EGH99615.1| RulA protein, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 147 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M +GD+L+++ + GD ++ T I + L RG Sbjct: 45 EPHVYLARVEDEGMQGCGMSRGDMLVVDRSQYAEHGDIVVASLNTRQI-CRRLH-MRGHV 102 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S N YP V + D+ + + Sbjct: 103 VILQSENADYPPLHVTDNDDLIILGVV 129 >gi|307545572|ref|YP_003898051.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217596|emb|CBV42866.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 200 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/199 (10%), Positives = 53/199 (26%), Gaps = 20/199 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + ++ + L+ LA++A + ++ + ++ + PS S+ KIL A Sbjct: 6 DVGARLRQLRQERQLSQRELAKRAQVTNSTISLIEQNSV-----SPSVSSLKKILDALPV 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +I + +E+ + S + P Sbjct: 61 SITAFFAGEEPSHPRPFYRAEELTEIGD-GVLSWRLVAARRPDRRMSVLHERYPPGADSG 119 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + ++ + + ++ GD R + Sbjct: 120 EDMLEHDGEEGGVVISGHI---EITVNGEVAV-----LSAGDAYYFDSRLPH----RFRN 167 Query: 188 RRGRSIDLMSLN--CCYPV 204 ++S N + Sbjct: 168 AGDTECVIVSANTPPSFSD 186 >gi|319425493|gb|ADV53567.1| Cupin 2 conserved barrel domain protein [Shewanella putrefaciens 200] Length = 182 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126 ++ + + + + LL +P P Sbjct: 57 SLVDFFSIEATSECEQKVVYRSDELLDIGTGPLEFKLIGRDYPNRAMSVMSETYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + Q ++ + GD + + + GD Sbjct: 117 GEEMLKHQGEEAAMVIEGKF---ELTVGDEVYI-----LEAGDSYYFNSELPH----RFR 164 Query: 187 SRRGRSIDLMSL 198 + L+S Sbjct: 165 NPFDEPCRLISA 176 >gi|116669644|ref|YP_830577.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609753|gb|ABK02477.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 199 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/139 (9%), Positives = 37/139 (26%), Gaps = 8/139 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + M + +T + L+ GL ++ +R PS ++ ++ + Sbjct: 18 VGNKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLAN-----PSFTTLAQLAHGLDVP 72 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRS 125 + + +K L G + P + + P Sbjct: 73 VGRFFIGQDESKSPVVRKSDRRNLKNVTRESVGEAVHELLTPNRDGNIEAQWISTPPGHD 132 Query: 126 PHNGIYAIQTQDTRHKTQD 144 + ++ + Sbjct: 133 TSGTPFTHSGEEFCYIISG 151 >gi|215486671|ref|YP_002329102.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312969257|ref|ZP_07783462.1| helix-turn-helix family protein [Escherichia coli 2362-75] gi|215264743|emb|CAS09124.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312286144|gb|EFR14059.1| helix-turn-helix family protein [Escherichia coli 2362-75] Length = 178 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 43/160 (26%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH-- 124 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 ++ I Q +G + G Sbjct: 125 VFVIDGQLD-LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163 >gi|182676898|ref|YP_001831045.1| peptidase S24/S26 domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636528|gb|ACB97301.1| peptidase S24 and S26 domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 149 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 5/103 (4%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + E ++ + Q + SM GD+L+++ ++ GD +++ Sbjct: 38 YLDESIDLNDLLIRNQPATFLWRVDGHSMREAGIFHGDLLVVDRSLAPADGDIVVVIVN- 96 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPV-DTV-EMSDIEWIARI 218 G+ K L R+G+ + L N YP + E +IE + Sbjct: 97 GERSLKRLQIRKGQ-LTLSFENKDYPEGLALHEGDEIEIWGVV 138 >gi|301066067|ref|YP_003788090.1| transcriptional regulator [Lactobacillus casei str. Zhang] gi|300438474|gb|ADK18240.1| transcriptional regulator [Lactobacillus casei str. Zhang] Length = 187 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I T S LA+KAG+ T+ + +R R PS E + K+ Sbjct: 3 NRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGT-----RTPSAEVLKKLADIFETNTA 57 Query: 71 QLL 73 L+ Sbjct: 58 YLM 60 >gi|296156536|ref|ZP_06839374.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893135|gb|EFG72915.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 183 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 62/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + ++H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + R+ + ++P L S V P + Sbjct: 59 SLAEFFTFEVEVERSVVSRRADMPNLGNESIEFYLAGSSVKDRNMGILREVYQP-LSDTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + L + G +L+ GD + R + Sbjct: 118 PEMLEHEGHEGGVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 + +++S N Sbjct: 166 PSAEHLCEIVSANS 179 >gi|310778021|ref|YP_003966354.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] gi|309747344|gb|ADO82006.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] Length = 182 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 15/178 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + L+ LA + L + ++ ++ PS E++ KI + Sbjct: 3 LGERIKKNRNEKGLSLRDLAGRVDLSASFLSQIEQGKA-----SPSIENLKKIANCLDVR 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPH 127 + L++ T ++ E + S + + N + Sbjct: 58 VSYLIEDDEVKKNTDIIRKGERHFIESIDSNTKISLLTSSDIEKNMEPILYEIYPGGESG 117 Query: 128 NGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVN---CGDRLLIKPR 176 Y ++ + M+ +GD L S+ + GD++ Sbjct: 118 RDYYTHPGEEFIFILEGTLEIYINDMVHSLNEGDSLYFKSSQKHRFVNNGDKVARALW 175 >gi|229084370|ref|ZP_04216650.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] gi|228698910|gb|EEL51615.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] Length = 107 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIANVLQTP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + + + + S F Sbjct: 58 VDTLLHDEPAAESQLDSEWTHLVKEAMSSGVSKEQFRE 95 >gi|15800839|ref|NP_286855.1| DicA, regulator of DicB; encoded within cryptic prophage CP-933M [Escherichia coli O157:H7 EDL933] gi|254792181|ref|YP_003077018.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. TW14359] gi|12514168|gb|AAG55466.1|AE005287_13 similar to DicA, regulator of DicB; encoded within cryptic prophage CP-933M [Escherichia coli O157:H7 str. EDL933] gi|254591581|gb|ACT70942.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. TW14359] Length = 132 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 5/96 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I ++ + + + LAR+ G+ + + P S+ K++ + + Sbjct: 10 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVSGHPLHW 64 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 L P + +I + F Sbjct: 65 FLLPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEE 100 >gi|168183639|ref|ZP_02618303.1| DNA-binding protein [Clostridium botulinum Bf] gi|237797020|ref|YP_002864572.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182673224|gb|EDT85185.1| DNA-binding protein [Clostridium botulinum Bf] gi|229263790|gb|ACQ54823.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 220 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 14/217 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65 ++ + I + LT LA+K G+ + N+ + + S + K + Sbjct: 3 RVSDKIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGKGINDI 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + K K + S + + +P I + Sbjct: 63 GISFEEEVSSEPKREMPINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVIGN 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 GI+ Q + K ++ M KGDI ++ + + Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNDKRSVRQ 179 Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217 L G I L +SL + V + DI+ IAR Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212 >gi|118580799|ref|YP_902049.1| putative phage repressor [Pelobacter propionicus DSM 2379] gi|118503509|gb|ABK99991.1| putative phage repressor [Pelobacter propionicus DSM 2379] Length = 130 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 38/103 (36%), Gaps = 4/103 (3%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKT-QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P I + + + M P GD++++++ ++ + + + G Sbjct: 3 LPGIAKHTGFTHTPPEGRFLRRICESDCMEPHIYSGDVVVIDTEVRNIN-EGVFMLHFGG 61 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARIL 219 K L +++++ N Y + ++ + R++ Sbjct: 62 SDQFKRLQPVGDNAVNVICDNPHYGNEACASEVLKPLIVGRVV 104 >gi|28869324|ref|NP_791943.1| RulA protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852565|gb|AAO55638.1| RulA protein, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 147 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M +GD+L+++ + GD ++ T I + L RG Sbjct: 45 EPHVYLARVEDEGMQGCGMSRGDMLVVDRSQYAEHGDIVVASLNTRQI-CRRLH-MRGHV 102 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S N YP V + D+ + + Sbjct: 103 VILQSENADYPPLHVTDNDDLIILGVV 129 >gi|194437865|ref|ZP_03069959.1| protein SamA [Escherichia coli 101-1] gi|194423086|gb|EDX39079.1| protein SamA [Escherichia coli 101-1] Length = 140 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 9/125 (7%) Query: 93 LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151 + FP+ + + + + SM + Sbjct: 11 PTRSTAPLYTERCPAGFPSPTAD---YTEDELDLNAYCIHRPSATYFVRAIGDSMKDMGL 67 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD+++++ A GD ++ + G+ K L + I L+ +N + Sbjct: 68 YSGDLMVVDKAENPMQGDIVIAETD-GEFTVKRLQLKP--RIALLPMNSASSSLY--SEE 122 Query: 212 IEWIA 216 ++ Sbjct: 123 LQIFG 127 >gi|262040488|ref|ZP_06013730.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042170|gb|EEW43199.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 154 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + V H+ + + SM GD+L+++SA + GD ++ Sbjct: 45 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 101 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K + L +N + + +++ + Sbjct: 102 SVQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 143 >gi|220914053|ref|YP_002489362.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860931|gb|ACL41273.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 201 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 8/139 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + M + +T + L+ GL ++ +R PS ++ ++ + Sbjct: 20 VGNKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMAN-----PSFTTLAQLAHGLDIP 74 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRS 125 + + ++ L G + P + + P Sbjct: 75 VGRFFIGQDQSRSPVVRRSARRNLQNVTRESVGEAIHELLTPDRDGTIEAQWISTPPGHD 134 Query: 126 PHNGIYAIQTQDTRHKTQD 144 + ++ + Sbjct: 135 TSATPFTHSGEEFCYIISG 153 >gi|190576850|ref|YP_001966182.1| micA(umuD) [Klebsiella pneumoniae] gi|110264434|gb|ABG56797.1| micA(umuD) [Klebsiella pneumoniae] Length = 143 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + V H+ + + SM GD+L+++SA + GD ++ Sbjct: 34 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 90 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K + L +N + + +++ + Sbjct: 91 SMQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 132 >gi|38703909|ref|NP_309096.2| regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|195935171|ref|ZP_03080553.1| putative regulatory protein [Escherichia coli O157:H7 str. EC4024] gi|260854273|ref|YP_003228164.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|261225700|ref|ZP_05939981.1| putative regulatory protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254659|ref|ZP_05947192.1| putative phage repressor protein [Escherichia coli O157:H7 str. FRIK966] gi|257752922|dbj|BAI24424.1| predicted phage repressor protein [Escherichia coli O26:H11 str. 11368] Length = 133 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 5/96 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I ++ + + + LAR+ G+ + + P S+ K++ + + Sbjct: 11 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVSGHPLHW 65 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 L P + +I + F Sbjct: 66 FLLPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEE 101 >gi|76800121|ref|ZP_00781981.1| cI repressor [Streptococcus agalactiae 18RS21] gi|76584599|gb|EAO61425.1| cI repressor [Streptococcus agalactiae 18RS21] Length = 79 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 M PL + D+L + + QV+ D + G K L + L SLN Y Sbjct: 1 MEPLIQDNDLLFIKVSSQVDMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNKSYEEIY 59 Query: 207 VEMSD-IEWIARIL 219 + +D I I ++ Sbjct: 60 LSENDNIRTIGEVV 73 >gi|330977318|gb|EGH77271.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 182 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 6/136 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + + L+ LA++AG+ ++ + ++ + PS S+ K+L ++ Sbjct: 4 GERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPMSM 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + K L+ + + + T P Sbjct: 59 VEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADTGE 118 Query: 129 GIYAIQTQDTRHKTQD 144 + + ++T + Sbjct: 119 EMLVHEGEETGILVEG 134 >gi|303242187|ref|ZP_07328676.1| transcriptional repressor, LexA family [Acetivibrio cellulolyticus CD2] gi|302590269|gb|EFL60028.1| transcriptional repressor, LexA family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 57/222 (25%), Gaps = 29/222 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 KK++ I+ + + P+ + G P + + I Sbjct: 11 KQKKVYSVIESFIKLKGIPPTVREIGEMVGEKTPGAVQGILNRLEQKGVIKREVGMARSI 70 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T+ + + T + ++ F N P Sbjct: 71 QLVTDTSQYMTPVYLPKIKKITNRNISDL------------------FNIYNIVKYYPFP 112 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA--IQVNCGDRLLIKPRTG 178 D S+L + D LI++ + GD +L+ Sbjct: 113 SELFKSENA---SENYFIMSCPDNSLLNSGIKYEDCLIIDRQSANSLEDGDIVLVLYD-N 168 Query: 179 DIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + ++ L + + D ++ I +++ Sbjct: 169 HALLRYFSKHEDTNNVVLKADSDLIGKDVFNKDEVMIIGKLI 210 >gi|237722102|ref|ZP_04552583.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229448971|gb|EEO54762.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 237 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 63/232 (27%), Gaps = 21/232 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + I R + NL S LA + + RN + K Sbjct: 1 MDTNLDVLGIIKRAKQALNLKRDSELAEYLEVSRATVTNW-----GARNSIDFRLLLDKF 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + L + E + + T Sbjct: 56 GDKVDYNWLLLGKGNPKHQPRFCQSELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANL 115 Query: 122 EIRSPHNGIYAIQT--------QDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170 + + YA+ D SM P+ + GDI+ ++S V G+ Sbjct: 116 KTLFTNKQQYALGKIWIPNISVCDGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEI 175 Query: 171 LLIKPRTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L+ + K + + + L+S N + + + I +A + Sbjct: 176 YLVSFMIDGDEYLAVKYVNRSEKEGYLKLVSYNTHHEPMDIPFASINAMAIV 227 >gi|330986268|gb|EGH84371.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 118 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M R GD+L+++ + GD ++ + + L RG Sbjct: 16 EPHVYLARVEDEGMQGGGMRTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDV 73 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S + YP V + D+ + + Sbjct: 74 VILKSEHPDYPPLHVTDHDDLIILGVV 100 >gi|283784957|ref|YP_003364822.1| SOS mutagenesis and repair protein [Citrobacter rodentium ICC168] gi|282948411|emb|CBG87999.1| SOS mutagenesis and repair protein [Citrobacter rodentium ICC168] Length = 140 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 9/129 (6%) Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 K + + P + P + V + + + + + + Sbjct: 3 MYHKPVDSRQIVTIPLFADIVQCGFPSPAQ---DYVE--QRINLNELLIQHPSATFFVRA 57 Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 SM+ GD+L+++SA++ GD ++ G+ K L R + L +N Sbjct: 58 AGDSMIDGGIGDGDLLVVDSALRPTHGDIVI-ASVEGEFTVKQLQLRP--VVQLNPMNSA 114 Query: 202 YPVDTVEMS 210 + V Sbjct: 115 WSPIKVSSE 123 >gi|268608967|ref|ZP_06142694.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 324 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 9/116 (7%) Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ--DTRHKTQDTSMLPLYRKGDILILNSAI 163 G ++ P+ + + + D + + SM P Y GDI+ + Sbjct: 209 ENKVSAGIGFDLND-PDQWKAIEVVDTAEARHADFAVEVEGRSMEPDYYDGDIVYIELTS 267 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +V G + + + G K I +S N Y + DIE R++ Sbjct: 268 EVPIGQ-VGLFIQNGKGYIK---EAGNGCI--ISRNPEYDDISPADGDIECKGRVI 317 Score = 38.6 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + NL LA + ++ + R P + KI + Sbjct: 2 LGDILKELRNKKNLYQQDLADILSVSKSTIAMWE-----TNKREPDLLMLKKIANYFEVS 56 >gi|238063042|ref|ZP_04607751.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884853|gb|EEP73681.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 199 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 5/133 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ + +T + LA G+ ++ ++ + G R PS E + I A Sbjct: 14 EVGPRLKRLRTQRGVTLTALAEATGISKSTLSRLE-----GGQRRPSLELLLPIAQAHQV 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P + P T + + Sbjct: 69 PLDELVGAPEVGDPRIRLVPRRANGRTVLPLTRQASSLQAWKVIIPADQTEPDLRVHEGY 128 Query: 128 NGIYAIQTQDTRH 140 +Y + + Sbjct: 129 EWLYVLSGRLRLV 141 >gi|224586148|ref|YP_002639947.1| mutagenesis by UV and mutagens-related protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470676|gb|ACN48506.1| mutagenesis by UV and mutagens-related protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 68 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 ++++ A + GD ++ G+ K L + I L+ +N YP + +++ Sbjct: 1 MVVDKAEKPLQGDIVI-AETEGEFTVKRLQLKP--RIALLPMNPAYP--VLYPEELQIFG 55 Query: 217 RIL 219 ++ Sbjct: 56 VVI 58 >gi|269838045|ref|YP_003320273.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787308|gb|ACZ39451.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 131 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 5/114 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I AI R+ ++ L+ S LA + G+ + ++ ++ PS + ++ Sbjct: 16 RQRIGPAIRRLRQQQGLSLSDLAERTGISVSYLSRLEKGRSV-----PSFTLLSRLGNEL 70 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 I ++ E+E+ P F + + Sbjct: 71 GVDIGFFVETEREAQDVDRALEEELSKTSIPEDVWPEIFSLSIEARKALLDYFE 124 >gi|222098975|ref|YP_002533543.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] gi|221571365|gb|ACM22177.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] Length = 188 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 50/185 (27%), Gaps = 20/185 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + ++ LT LA + L + ++ + PS +++ +IL A Sbjct: 14 RIGEKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKT-----SPSIDTLERILEALGT 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + +K+E+ S + P ++ Sbjct: 69 DLKHFFSDFEEERVVFKKEERVPVYDEPEGVKSEILMSGVEDKEIDPILVTLEPGAQTEE 128 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + L ++ GD + K + Sbjct: 129 ESYHEGSEFGFVIQGKIDLYLDG----------KRYRLKEGDCFYYRADK-----KHYVK 173 Query: 188 RRGRS 192 G+ Sbjct: 174 NPGKK 178 >gi|167648095|ref|YP_001685758.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350525|gb|ABZ73260.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 78 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + + R+ + L+ LA GL PT + +R R P+ + + + Sbjct: 5 PMRLGQALGINVRRLRKERGLSQEALADAVGLAPTYVGQIERG-----LRNPTLDVVERF 59 Query: 62 LAATN 66 Sbjct: 60 ADVLG 64 >gi|330890951|gb|EGH23612.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 182 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGGRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + K L+ + + + T P Sbjct: 57 SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + ++T + Sbjct: 117 GEEMLVHDGEETGILVEG 134 >gi|260844424|ref|YP_003222202.1| putative phage regulatory protein CI [Escherichia coli O103:H2 str. 12009] gi|13360529|dbj|BAB34492.1| putative regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|257759571|dbj|BAI31068.1| predicted phage regulatory protein CI [Escherichia coli O103:H2 str. 12009] gi|320188717|gb|EFW63377.1| Putative regulatory protein [Escherichia coli O157:H7 str. EC1212] gi|323157248|gb|EFZ43369.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|326338913|gb|EGD62729.1| Putative regulatory protein [Escherichia coli O157:H7 str. 1125] gi|326344317|gb|EGD68076.1| Putative regulatory protein [Escherichia coli O157:H7 str. 1044] Length = 125 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 5/96 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I ++ + + + LAR+ G+ + + P S+ K++ + + Sbjct: 3 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVSGHPLHW 57 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 L P + +I + F Sbjct: 58 FLLPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEE 93 >gi|324009966|gb|EGB79185.1| helix-turn-helix protein [Escherichia coli MS 57-2] Length = 178 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 43/160 (26%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF---PTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQRAPGAISESTPHEKGVIEH-- 124 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 ++ I Q +G + G Sbjct: 125 VFVIDGQLD-LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163 >gi|256833482|ref|YP_003162209.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] gi|256687013|gb|ACV09906.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] Length = 141 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 7/115 (6%) Query: 3 SFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 +++ A I + ER ++ L+ G+ + + +R P+++S+ K Sbjct: 9 MTQAERVEAAATIADIRERLGISQQELSDATGISRQTISNIERGATR-----PNSKSLEK 63 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 I A + D E G Sbjct: 64 IFEALGVSDAPEFDAATEKWLVMVGTLVERIPAQRRQKAMDSTMHYLALSVGADI 118 >gi|323191579|gb|EFZ76837.1| protein samA [Escherichia coli RN587/1] Length = 145 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + D ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHEDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134 >gi|311108474|ref|YP_003981327.1| hypothetical protein AXYL_05312 [Achromobacter xylosoxidans A8] gi|310763163|gb|ADP18612.1| helix-turn-helix family protein 12 [Achromobacter xylosoxidans A8] Length = 190 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 50/161 (31%), Gaps = 20/161 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + + LA +AGL + ++ + + P+ ++ K+ A Sbjct: 14 RIAGRLKALRQERGWSLDELAGRAGLSRATLSRLENAEV-----SPTASALGKLCGAYGL 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116 T+ +L+ + D ++ + + G + G + Sbjct: 69 TMSRLMRMVEDDFAPLVPQQAQAVWVDGSAGFRRRSVSPPAQRLAGEVLACELAAGARIA 128 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 P H+ + ++ + +GD L Sbjct: 129 YDSSPRPGLEHH-LLMLEGEL-AITVDGQ--AHSLSQGDCL 165 >gi|312905525|ref|ZP_07764639.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|310631254|gb|EFQ14537.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 418 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 6/146 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + EAI E T LA K G+ + +K ++ R S E + Sbjct: 1 MNQVNQHDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RRLSAEKLNL 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119 +L + E I + + + + L+ F+ + P G V Sbjct: 56 VLDSLQEEIVPVNRVLIDYLTIHFFSNQHLKLIEEIIGMPIERFEELDYAPKGYIGQYVW 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145 I ++ ++ Q Sbjct: 116 NQVITIRYSIDDTVKGTVMEFSGQGC 141 >gi|300783917|ref|YP_003764208.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793431|gb|ADJ43806.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 211 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 55/191 (28%), Gaps = 17/191 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ I + LT LA + GL ++ +R PS S+ +I A Sbjct: 27 ERVGTRIRELRRSRGLTLVQLAGRTGLSHPFLSQLERGHTR-----PSMVSLDRIAKALG 81 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125 T +L+ + ++ + + G ++ + + Sbjct: 82 TTQVELIAAGAPGLPDADIGRADVLRAGEGARNQFPHGEVRLLTRGRRAFDPIEWTGTTT 141 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + ++L K + L++ GD + A Sbjct: 142 EFGDYFRHPEDEF-VHVVGGALLLDLEKDGTVRLDA------GDSVYYP----GGTAHRW 190 Query: 186 ISRRGRSIDLM 196 S G L+ Sbjct: 191 CSPDGSRFHLV 201 >gi|256397793|ref|YP_003119357.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364019|gb|ACU77516.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 200 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 5/139 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R LT + LA + G++ ++ ++ + G R P+ E + + Sbjct: 20 DAVGPRLRELRHRRGLTLADLAERTGINESTLSRLE-----GGARKPTLELLLPLAEVYA 74 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L+ P + + + P G + + + + Sbjct: 75 VPLDDLVGAPRTGDPRIHLRPVNRHGMTHIPLSQPGGVQAHKLLIPPRPDVEPDLKTHEG 134 Query: 127 HNGIYAIQTQDTRHKTQDT 145 +Y I + Sbjct: 135 FEWLYVISGRLRLLLGDQD 153 >gi|163759234|ref|ZP_02166320.1| putative prophage repressor [Hoeflea phototrophica DFL-43] gi|162283638|gb|EDQ33923.1| putative prophage repressor [Hoeflea phototrophica DFL-43] Length = 196 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 36/212 (16%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 +T + +A + GLD T++N+ + +E + + ++ N L+ Sbjct: 1 MTQAEVAERLGLDLTNYNRLENGKVE-----LTYNRMRELADIFNVEPVDLISDS----- 50 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141 + + + + +GS W V VP + Sbjct: 51 ---SGVRTVRVRGWVEAGSWREASEWD---EQDWYDVAVPATPGLSTLSL------YGAE 98 Query: 142 TQDTSMLPLYRKGDILI----LNSAIQVNCGDRLLIKPRT----GDIVAKVLISRRGRSI 193 T+ SM +Y +G ++I + ++ G R +++ + K L ++ Sbjct: 99 TRGPSMNRVYPEGTVIIFTSMIERPEELEVGKRYVVEREKSDGLREATVKALARDESGNL 158 Query: 194 DLMSLNCC---YPVDTVEMSD---IEWIARIL 219 LM + + I I R++ Sbjct: 159 WLMPDSNDPRHQEPIALGGDAGDIIRIIGRVV 190 >gi|251778147|ref|ZP_04821067.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082462|gb|EES48352.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 222 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 10/216 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + E++ L+ L +K G+ N + E + K L Sbjct: 3 RVGEKIKQAREKNGLSAKVLGKKLGVAEKYINDIELGRKVAN--EAFIERVSKFLKTDLN 60 Query: 68 TIC------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 I +L+ + +T K ++ + + + N T + Sbjct: 61 DINMVVTDEELMKEKEAFKKTVNTKVEKSEVWTDAFASVIKNVPIYNYSLSNTKGTRELT 120 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + G Q + + ++ M L + ++ + + + G+ Sbjct: 121 VHSNKVEGY--PQDKVLYLQIENDDMSGFRILKGDLAFSHMVKEFSNNGIFLIDHKGERK 178 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + + S + L+S +T EM +I IA+ Sbjct: 179 IRQIRSLGNSKVLLISNGGSLITETTEMKEINIIAK 214 >gi|152973797|ref|YP_001338836.1| ImpA-like protein; UV protection [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|300837030|ref|YP_003754084.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae] gi|329998716|ref|ZP_08303191.1| peptidase S24-like protein [Klebsiella sp. MS 92-3] gi|150958579|gb|ABR80606.1| ImpA-like protein; UV protection [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|299474834|gb|ADJ18658.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae] gi|328538586|gb|EGF64689.1| peptidase S24-like protein [Klebsiella sp. MS 92-3] Length = 143 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174 + V H+ + + SM GD+L+++SA + GD ++ Sbjct: 34 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 90 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ K + L +N + + +++ + Sbjct: 91 SVQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 132 >gi|288941562|ref|YP_003443802.1| putative phage repressor [Allochromatium vinosum DSM 180] gi|288896934|gb|ADC62770.1| putative phage repressor [Allochromatium vinosum DSM 180] Length = 119 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 1/82 (1%) Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 + M P + G I+I+ + + G + L++ Sbjct: 18 FALRVLGDEMDPEFPDGCIIIIEPNDRCPNPSYIF-VEVEGVRWFRQYRRDADGRERLVA 76 Query: 198 LNCCYPVDTVEMSDIEWIARIL 219 LN YP + + + I+ Sbjct: 77 LNPLYPEIDLTGLEWSVLGVII 98 >gi|57238176|ref|YP_179426.1| signal peptidase I, putative [Campylobacter jejuni RM1221] gi|57166980|gb|AAW35759.1| signal peptidase I, putative [Campylobacter jejuni RM1221] Length = 220 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/190 (10%), Positives = 58/190 (30%), Gaps = 24/190 (12%) Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP---------LLYFPPSGSGGFF 104 + +S+ ++ + + + + +K + + + + +F Sbjct: 16 NVKSLEEVAERLGYKKNNANNWRNNKQLSAQALKKYYELKKANNSVSIHHHKDTITIRYF 75 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDIL 157 G + + TQ K SM P + G + Sbjct: 76 PDICASAGFGNANENENFQLINIDKAFLTDVLGVPYKTQYDMIKIYGESMEPFIQNGSFI 135 Query: 158 ILNSAI----QVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDI 212 I+++ ++ D ++ + ++ K ++ I + S N + ++ S + Sbjct: 136 IIDTTKNSLEKIRNADVVIFRDNDNELFCKRILKNAFDDDIVISSDNFNFGDKKIKKSAL 195 Query: 213 ---EWIARIL 219 +I ++ Sbjct: 196 KNYVFIGVVV 205 >gi|319950565|ref|ZP_08024474.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] gi|319435759|gb|EFV90970.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] Length = 195 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 13/147 (8%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 MT + + + + + ++T + LA K G+ P++ ++ + R P+ E Sbjct: 1 MTDPTAQTLTGVGPRLRSLRRHRDMTLAELADKTGISPSTLSRLESGQ-----RRPTLEL 55 Query: 58 IFKILAATNETICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + A T+ L+D P + + ++ G V P G Sbjct: 56 LLPLARAHGVTLDHLVDAPPTGDPRIALRPFTTDYGATVIPLSRRPGGIQAYKFVLPRGR 115 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRH 140 + + + H+ ++ + + Sbjct: 116 DDDEPHLH-VHDGHDWVFVLDGRLRLV 141 >gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 49/182 (26%), Gaps = 13/182 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K I I + LT L +K L + ++ +R S ++ K Sbjct: 1 MKTIKRKDIGNKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTS-----AVSITALEK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I A + LP + ++ + Sbjct: 56 IAHALETELAYFFTLPQKHENLIMRSYEQEVFSVEESRVYNRLTNDTNGKVLESMLITLF 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + Y + ++ + + + LI + Q+N GD + + Sbjct: 116 PNQKENKVATYTHEGEEFAYVLEGILTI--------LIDDEEYQLNPGDCVHMASTIPHE 167 Query: 181 VA 182 Sbjct: 168 WV 169 >gi|54307386|ref|YP_128406.1| LexA repressor [Photobacterium profundum SS9] gi|62288352|sp|Q6LVS1|LEXA_PHOPR RecName: Full=LexA repressor gi|46911806|emb|CAG18604.1| putative LexA repressor [Photobacterium profundum SS9] Length = 192 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 3/124 (2%) Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 + I +L + G G G E + D + S Sbjct: 50 SRGIRVLRHDEVEAKGLPLIGRVAAGEPILAQEHVETHYEVDPALFKPRADFLLRVNGMS 109 Query: 147 MLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 M + GD+L ++ V+ G + + D+ K L + G + L + N + Sbjct: 110 MKDIGIMDGDLLAVHKTQDVHNGQVV-VARVDDDVTVKRLDKQ-GSQVLLHAENEDFAPI 167 Query: 206 TVEM 209 V++ Sbjct: 168 VVDL 171 >gi|302864813|ref|YP_003833450.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501098|ref|YP_004079985.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302567672|gb|ADL43874.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315407717|gb|ADU05834.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 187 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 5/125 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I + ++ S LAR AG+ + + + R P E+++ I A Sbjct: 14 EVGRRIRSLRTERGISLSELARLAGVGKATLSGLENGV-----RNPRLETLYAITAQLGV 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L P L F + G + + H Sbjct: 69 PLTAVLATPDQAPTLRGAAVGGTLLEVFSDREATYELYRMWVTPGPAQLSPAHSSGVTEH 128 Query: 128 NGIYA 132 +++ Sbjct: 129 VTVFS 133 >gi|20090666|ref|NP_616741.1| hypothetical protein MA1815 [Methanosarcina acetivorans C2A] gi|19915714|gb|AAM05221.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 187 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 15/124 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + LT S LA++AG+ + + ++ P ++ K Sbjct: 1 MQLPTPED----LKKRRNELGLTQSDLAKRAGVSQPLIARIESGDVD-----PRLSTVRK 51 Query: 61 ILAATNETICQLL------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 IL A E + + E +E+ L S G P G+ Sbjct: 52 ILDAFEEAEKEQQIIIKDLMHSPVFHVSPEDSVEEVVNLMHIHGFSQIPVLDGGIPVGSI 111 Query: 115 WNTV 118 + Sbjct: 112 SEDM 115 >gi|299145162|ref|ZP_07038230.1| transcriptional regulator [Bacteroides sp. 3_1_23] gi|298515653|gb|EFI39534.1| transcriptional regulator [Bacteroides sp. 3_1_23] Length = 237 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 62/232 (26%), Gaps = 21/232 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + I R + NL S LA + + RN + K Sbjct: 1 MDTNLDVLGIIKRAKQALNLKRDSELAEYLEVSRATVTNW-----GARNSIDFRLLLDKF 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + L + E + + T Sbjct: 56 GDKVDYNWLLLGKGNPKHQTRFCQSELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANL 115 Query: 122 EIRSPHNGIYAIQTQDT--------RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170 + + YA+ SM P+ + GDI+ ++S V G+ Sbjct: 116 KTLFTNKQQYALGKILIPNISVCDGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEI 175 Query: 171 LLIKPRTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L+ + K + + + L+S N + + + I +A + Sbjct: 176 YLVSFMIDGDEYLAVKYVNRSEKEGYLKLVSYNTHHEPMDIPFASINAMAIV 227 >gi|164685759|ref|ZP_01947326.2| hypothetical protein A35_A0745 [Coxiella burnetii 'MSU Goat Q177'] gi|164601270|gb|EAX32065.2| hypothetical protein A35_A0745 [Coxiella burnetii 'MSU Goat Q177'] Length = 228 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 64/208 (30%), Gaps = 20/208 (9%) Query: 1 MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M +++ A + E L+ A+K+G+ T+ + +G +S+ Sbjct: 1 MKRLKEERLARAKRVQAAREMTKLSRREFAKKSGIANTTLQHWE----DGEKHTLPEKSV 56 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + A + + +++ + PT Sbjct: 57 RRFIKALLNLGV-HCSYDWLMHGKGPAPQYAGHVIFQEETTD--------LPTHGARQKN 107 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIK 174 EI+ + D +M P + +G+++ + I+ G ++ Sbjct: 108 EDEEIKEELTLFLSRNKNTVHLVVSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVL 167 Query: 175 PRTGDIVAKVLISRRGRSIDLMSL-NCC 201 + GD++ + ++ + N Sbjct: 168 VQGGDLLLRTILKGDVEGYYHLGYTNPK 195 >gi|68304976|gb|AAY89987.1| predicted phage repressor [uncultured bacterium BAC13K9BAC] Length = 111 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 ++ + D SM P + K I+I++ + G + ++ G + G Sbjct: 18 SEPYALQVTDNSMEPEFPKDCIVIVDPSGSCVDGQYIFVEYD-GVRWFRRFKEIDGDKY- 75 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L+++N YP ++ S + I I+ Sbjct: 76 LLAVNDEYPEIKLDNS-YDVIGIIV 99 >gi|302037568|ref|YP_003797890.1| putative repressor LexA [Candidatus Nitrospira defluvii] gi|300605632|emb|CBK41965.1| putative Repressor LexA [Candidatus Nitrospira defluvii] Length = 181 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 47/207 (22%), Gaps = 42/207 (20%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 R LT LA + + + + Sbjct: 7 KRTRLALGLTQQALADQLKRKRLAIARYEGGTR--------------------------- 39 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + + S G+ G+ + E Sbjct: 40 -----------TIPGVVEVALQSIGQSSRISLVGIVAAGDPIEPIPQTERI-EVPKSMLG 87 Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + + + TSM GD++++ G ++ + K + Sbjct: 88 RGETFALRVKGTSMRDDGILPGDVVVVQKQDVARNGQTVIALLN-DEATIKTYHR-TAGA 145 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 I+L N V +D I I+ Sbjct: 146 IELHPANEAMTPILVHETDTFHIEGIV 172 >gi|320321508|gb|EFW77617.1| putative ultraviolet light resistance B protein RuvA [Pseudomonas syringae pv. glycinea str. B076] Length = 142 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 6/107 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + P I A + + SM G L+++ I G + + Sbjct: 33 DYYQAPISLDDLLNIRA--PHVFIVQVEGHSMTGAGILHGCRLVVDRTITPMSGHIV-LA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILW 220 + K L+ G L S + +P + S+I + W Sbjct: 90 YVDNQPIVKRLL-NEGGKWLLASEHPDFPPLVQTDFSEITTFGVVTW 135 >gi|297539388|ref|YP_003675157.1| peptidase S24/S26A/S26B, conserved region [Methylotenera sp. 301] gi|297258735|gb|ADI30580.1| Peptidase S24/S26A/S26B, conserved region [Methylotenera sp. 301] Length = 198 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 11/109 (10%) Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDR 170 + + + E + SM GD +I+ N GD Sbjct: 93 SEGGDYITIDEHLVKK------PSITELIPVAGDSMRDLGILDGDTVIVEKRPLANIGDI 146 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 ++ K L + L+ N + + + I ++ Sbjct: 147 VVAIID-DKFTIKTLGKEKD-LFVLIPANPDFD--IIRPREAFGIYGVV 191 >gi|317487075|ref|ZP_07945882.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921647|gb|EFV42926.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 116 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + T + A K G+ P S ++ +R + R+P E + ++L + Sbjct: 13 VGANITARRKLKGWTQAEFAEKMGMGPDSLSRIERGTVA--PRFPRLEEMARLLECSP 68 >gi|300936711|ref|ZP_07151612.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300458170|gb|EFK21663.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 133 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 5/96 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I ++ + + + LAR+ G+ + + P S+ K++ T + Sbjct: 11 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVTGHPLHW 65 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 L P + +I + F Sbjct: 66 FLLPPEEGEQIFTPDTMKIGPRQRELLQAFSAFPEE 101 >gi|86355908|ref|YP_467800.1| LacI family transcription regulator [Rhizobium etli CFN 42] gi|86280010|gb|ABC89073.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CFN 42] Length = 189 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I + LT LA +G+ ++ +R P+ + + Sbjct: 1 MEQELEQAIGIRIRTLRLEKGLTLDELAEASGVSRAMISRIERAEA-----SPTASLLAR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + AA ++ +++++ + + V Sbjct: 56 VCAALGLSLSAFFAEEGQQASPLARRQEQQVWRDPETGYLRRAVSAPGTASVVDIVEVEF 115 Query: 121 PEIRSPHNGIYA 132 P +A Sbjct: 116 PPGARVSFPPHA 127 >gi|159184228|ref|NP_353276.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139556|gb|AAK86061.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 193 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 10/135 (7%) Query: 3 SFSHKKIWEA-----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + +I E I + LT LA ++G+ ++ +R P+ Sbjct: 2 METEDRILERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEA-----SPTASL 56 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +I AA ++ KK + + Sbjct: 57 LARICAALGLSLSGFFAENEEAVSPLVKKRDQQLWKDPETGYVRRAISPPRVGSDVDIVE 116 Query: 118 VGVPEIRSPHNGIYA 132 V P +A Sbjct: 117 VEFPAGARVGFPPHA 131 >gi|330982364|gb|EGH80467.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 147 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + +D M GD+L+++ + GD ++ I + L RG Sbjct: 45 EPHAYLARIEDQGMQGGGMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDV 102 Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218 + L S N +P V + D+ + + Sbjct: 103 VILESQNPDFPPLHVTDNDDLIILGVV 129 >gi|223984327|ref|ZP_03634469.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] gi|223963684|gb|EEF68054.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] Length = 647 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I R + T LA+K + + +K + PS + + ++ Sbjct: 2 KLAENIQRRRKAAGWTQEQLAQKCAVSRQAVSKWEAGQSV-----PSLDKLRQLANCFGI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ +L+ + + L+ + G Sbjct: 57 SVDELVQDDPAAEPADAHQTGSPSLVELDQARQTRQRRHGWTAA 100 >gi|302388655|ref|YP_003824476.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302199283|gb|ADL06853.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 257 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 12/157 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + ++ S LA KAG+ T + ++ PS ++ + A T Sbjct: 75 IGEKIALLRQEKGISLSELAEKAGISATYLCQIEKGNA-----LPSLSTLKALAEALCMT 129 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L+ G +K +E L + G + + P +++ Sbjct: 130 AQDLMVATSHVGYKIKKIRQERGLTQVELAKKAGVSTGLIGQIESGRVE---PSLKTLEK 186 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDI----LILNS 161 +A+ T D + L R + L+++ Sbjct: 187 IAHALSLSPCYFVTDDDEIASLLRPMNPELKRLLVDP 223 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + N++ LAR+A L + ++ +R + PS E+I K+ A N + Sbjct: 7 IRNIRRKRNMSLQELARRADLSVSYLSEIERGIKQ-----PSLETIEKMANALNISKN 59 >gi|224824859|ref|ZP_03697966.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603352|gb|EEG09528.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 182 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/194 (10%), Positives = 54/194 (27%), Gaps = 20/194 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + ER+ L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 2 DIGPRLKLVRERYKLSQRELAKRAGVTNATISLIEQNRV-----SPSVSSLVKLLEGIPM 56 Query: 68 TICQLLDLPFSDGRTTE--KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ + ++ L + P + Sbjct: 57 SLADFFTFDEPPRENRYVFRPGEQPDLGNNGLRLLLVGATVQDRQMRMLRE-LYAPGADT 115 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 I + ++ + ++ ++ + GD Sbjct: 116 GPEAITHSEGEECGIVVRG-TVELTIDGQVNVL-------HAGDGYYFPSTLPH----RF 163 Query: 186 ISRRGRSIDLMSLN 199 + +++S N Sbjct: 164 RNIGQDEAEIISAN 177 >gi|317132933|ref|YP_004092247.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] gi|315470912|gb|ADU27516.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] Length = 262 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 5/109 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ L+ LA G+ + +K + + P + + + ++ Sbjct: 5 ERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQ-----PDMDKLVLLSKLFGISLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +L+ G + + + + G V Sbjct: 60 ELVKGKADAGPREFRFGLPVYHYEYKSKHTIFGIPLFHVNVGWGRPYVA 108 >gi|294492433|gb|ADE91189.1| putative transcriptional regulator DicA [Escherichia coli IHE3034] Length = 125 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 5/96 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I ++ + + + LAR+ G+ + + P S+ K++ T + Sbjct: 3 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVTGHPLHW 57 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 L P + +I + F Sbjct: 58 FLLPPEEGEQIFTPDTMKIGPRQRELLQAFSAFPEE 93 >gi|91217921|ref|ZP_01254874.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] gi|91183898|gb|EAS70288.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] Length = 247 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/218 (8%), Positives = 55/218 (25%), Gaps = 16/218 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I ++ L+ A L + + E P ++I K+ + +I Sbjct: 5 GKNIKKIRAIKGLSQQAFAELFSLKRATLGAYEEGRSE-----PKIDTIIKVANYFSISI 59 Query: 70 CQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + + S Sbjct: 60 DDFLTKEVTVNQLLRFNGGITTDINQIVKASLKEIPFVNSLNVKLFIENFKTSQSYSALP 119 Query: 129 GI-YAIQTQ-DTRHKTQDT----SMLPLYRKGDILI--LNSAIQVNCGDRLLIKPRTGDI 180 I ++ D S D++I + + GD +++ ++ Sbjct: 120 TIRVPVEGNLDFLAFMVTDLFMVSDEEALFPNDVVIGESRDSNALIQGDVVVVLVN-HEL 178 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + + L++ + P + + ++ Sbjct: 179 LIRRYT-ISDKGYKLLTDHTHIPSIDISFDAAIYFWKV 215 >gi|78067809|ref|YP_370578.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968554|gb|ABB09934.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 183 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + RT + E+P L S + P+ + Sbjct: 59 SLAEFFTFELVESRTVVSRRDEMPNLGNDTLAFHLVGASMKDRNMCILREIYQPQADTGP 118 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + L + G +L+ GD + R + Sbjct: 119 EMLVHAGHEGGGV-VSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 I +++S N Sbjct: 166 PSADLICEVVSANS 179 >gi|329118649|ref|ZP_08247353.1| hypothetical protein HMPREF9123_0781 [Neisseria bacilliformis ATCC BAA-1200] gi|327465384|gb|EGF11665.1| hypothetical protein HMPREF9123_0781 [Neisseria bacilliformis ATCC BAA-1200] Length = 139 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 4/108 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + R + + + D ++ P L+++ + + Sbjct: 31 PLLFSRELMSELGIDKNHCGIFSVHDEAIKPTLDGRCELLVDFSDNKLTDGGIYALQIGS 90 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWASQ 223 + + + R I L N YP VE D ++ I R+ + Q Sbjct: 91 RSLVRRVKLLL-RQIILACDNPEYPDMVVEGEDLNRLKVIGRVRYIGQ 137 >gi|219848414|ref|YP_002462847.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542673|gb|ACL24411.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 211 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 24/174 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT H + + + + ER ++ LA +GL + + + PS ++ + Sbjct: 14 MTKRGHVDVGKRLRTLRERQRMSIRALAEASGLAVNTLSLIENGRT-----SPSVSTLQR 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG- 119 + A I R + FP G T+ Sbjct: 69 LAVALQVPISAFFTPEVPQQRIVYTPAGQAIASIFPHGTL------ADLAPGFINRTLEP 122 Query: 120 ----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q+ + + + +N GD Sbjct: 123 LLLTLNPGAGSGPEAIIHTGQEFVFGVNGQIL--------YTVADQTYTINPGD 168 >gi|293394088|ref|ZP_06638391.1| transcriptional activator-regulatory protein [Serratia odorifera DSM 4582] gi|291423450|gb|EFE96676.1| transcriptional activator-regulatory protein [Serratia odorifera DSM 4582] Length = 272 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/198 (10%), Positives = 49/198 (24%), Gaps = 30/198 (15%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E T + LA++ G+ + K G + + K L E + Sbjct: 27 SRLKKAMEEGGFTQAALAKETGMAQSMIWKLVSGNANGTS---KLVILSKALGVRPEWLG 83 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + + P+ ++ + VP Sbjct: 84 EGSGPMREGDKNEHHRIGSGPIFGVEIYDGDIRTNT----------WITVPG-------- 125 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS--- 187 A + + + G ++++SA + D + + Sbjct: 126 LAKSDSCKAYHMTEDTGCSEVPAGTYIVVDSAEEAGNNDLVY-ATTGKKSSVYRFVRGGV 184 Query: 188 -----RRGRSIDLMSLNC 200 + L+ N Sbjct: 185 EDFLSVDDSRVPLIPANS 202 >gi|157737880|ref|YP_001490564.1| hypothetical protein Abu_1647 [Arcobacter butzleri RM4018] gi|157699734|gb|ABV67894.1| conserved hypothetical protein [Arcobacter butzleri RM4018] Length = 215 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/196 (10%), Positives = 58/196 (29%), Gaps = 16/196 (8%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 +A+ ++ F K+K++ R P E + + + Sbjct: 27 KDIAQSLNINYDVFRKNKQYN-----RVPYLEIMQFLAKRNISINWFFFNQLPESLIENT 81 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--RHKT 142 + +GG + + P + Y + + Sbjct: 82 SNYIILKYQKNIIGSAGGGAIN--------YEINPEPLVIDKQLLDYINSSYKYTEVLEV 133 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 SM P + G ++ ++ + + + + + K + + L S N + Sbjct: 134 FGESMEPDIKDGSLIFIDKSKKDIDDKNIFLINTKDGLYVKSIN-VNNDKVILKSNNHTF 192 Query: 203 PVDTVEMSDIEWIARI 218 +++ +++ I ++ Sbjct: 193 NDIYLDIDEVDVIGKV 208 >gi|118602364|ref|YP_903579.1| putative prophage repressor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567303|gb|ABL02108.1| putative prophage repressor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 131 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 ++ + M P + + I+I++ +IQ++ +++ ++ + I R Sbjct: 19 SEPFALQNLGNYMTPEFSENCIVIIDPSIQIHNRAYAVVRFD-DELYFRQYIERGSNKF- 76 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L+ LN + + + E I ++ Sbjct: 77 LICLNTQHDDIEL-KGEFEIIGCVV 100 >gi|260893514|ref|YP_003239611.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260865655|gb|ACX52761.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 256 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + + E + LT + LA AG+ + ++ ++ PS +++ KI A Sbjct: 135 QQGTLGARLRALREEYGLTQAQLAAMAGVTAGLIGQIEQGKVQ-----PSLKTLEKIAQA 189 Query: 65 TNETICQL 72 + C Sbjct: 190 MGVSPCYF 197 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I + + LA +AG+ + ++ +R + +PS ++ ++ Sbjct: 73 NVGERIRLLRTEKGWSLQELACRAGISASYLSEIERGTV-----YPSLSTLKRLAEELG 126 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + E ++ LARKA + + ++ +R + PS +I K+ A N + Sbjct: 5 GERIRALREEKGMSLHDLARKAQISLSYLSEIERGT-----KRPSLRTIEKLAQALNVS 58 >gi|238024352|ref|YP_002908584.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237879017|gb|ACR31349.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia glumae BGR1] Length = 204 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 10/127 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---------- 51 T H + + + L+ + LA +AG+ + ++ +R R Sbjct: 12 TELRHSDVGGRLRALRVEQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALS 71 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 P + + AA++ + + K+ L PP + P Sbjct: 72 VPLSALLEDEGAASDPVVGDFVRKADERPLFDVGKQGMQKELLSPPGDHDLKMMIILLPA 131 Query: 112 GNKWNTV 118 G + V Sbjct: 132 GAGSDEV 138 >gi|307544496|ref|YP_003896975.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216520|emb|CBV41790.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 195 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + ++ LA++ G+ +S + ++ + PS S+ KIL A Sbjct: 15 DDVGARLRALRNLRGISQRELAKRCGVTHSSLSLIEQGKV-----SPSVSSLKKILDAIP 69 Query: 67 ETICQLLDLP 76 ++ + Sbjct: 70 MSVGDFFTMD 79 >gi|298372166|ref|ZP_06982156.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroidetes oral taxon 274 str. F0058] gi|298275070|gb|EFI16621.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroidetes oral taxon 274 str. F0058] Length = 219 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 29/216 (13%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + ++ L+ LA G+ + + G+ ++ + KIL Sbjct: 6 IKDLRKKKGLSQEKLAEMLGVHHRTVQNWEHGGVVPTSKH---ALLRKILEE-------- 54 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + K+IPL G + P + + Sbjct: 55 -AMSENKTPVSSAGRKKIPLYDTYSVGGTNGLVATNEPISAPLEWIDAGDWFVDATAAMH 113 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGR 191 + ++ + G +I+ I K L + + Sbjct: 114 HYGDSMAEYPSGCILALR-------EVHDKRLIIWGKNYVIETDEYRIT-KRLQRSKDPK 165 Query: 192 SIDLMSLNCC--------YPVDTVEMSDIEWIARIL 219 I S N + + S I +A +L Sbjct: 166 CITAYSTNEETYQDGTLIHQPIDIPKSAIRRLALVL 201 >gi|308270544|emb|CBX27156.1| Protein impA [uncultured Desulfobacterium sp.] Length = 152 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 4/96 (4%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + K +D SM+ GD+L+++ +++ +++I G ++ Sbjct: 50 SLDLNEHLIKHPAATFFVKIKDDSMIKAGIFHGDLLMVDRSLKPCD-KKVVIALHEGGML 108 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIA 216 + + I LMS + Y V +IE + Sbjct: 109 VRRFRKIK-GKIYLMSESPEYRHVEVSEDMNIEILG 143 >gi|163939188|ref|YP_001644072.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010668|ref|ZP_04167868.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] gi|229132174|ref|ZP_04261032.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|163861385|gb|ABY42444.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228651321|gb|EEL07298.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|228750633|gb|EEM00459.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] Length = 107 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + + + ++ S F Sbjct: 58 VDTLLHDETTTEGHLDSEWTQLVKDAMSSGVSKEQFRE 95 >gi|308071596|ref|YP_003873201.1| transcriptional regulator sinR [Paenibacillus polymyxa E681] gi|305860875|gb|ADM72663.1| HTH-type transcriptional regulator sinR [Paenibacillus polymyxa E681] Length = 114 Score = 53.2 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + E I + + LT LA +GLD +R R S +++ K Sbjct: 1 MTKL-RDSVGERIRTIRKAKGLTQQQLAELSGLDDAYIGSVERGE-----RNFSIDTLEK 54 Query: 61 ILAATNETICQLLDLPFSDGRTT 83 +L A N +I +L+ + Sbjct: 55 VLTALNVSISELMFSKEHMTKDE 77 >gi|332291093|ref|YP_004429702.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169179|gb|AEE18434.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 251 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 57/223 (25%), Gaps = 17/223 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I ++ L+ A L + + E P ++I KI + I Sbjct: 5 GKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSE-----PKIDTIIKIANYFSIPI 59 Query: 70 CQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRS 125 LL + + + + + + + Sbjct: 60 DDLLTKELTVNSLLKFKANLTTDHDIITKQAFASIPCITSKNAKEYLLYNDKEAFVSDMQ 119 Query: 126 PHNGIYAIQTQDTRHKTQD---TSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTG 178 + + + +S DI+I + L++ Sbjct: 120 VLQLPINPEKEFRAFTVDNLEMSSNDKGLFPKDIVIGEMIPKDVYKKLNNGHLVLAVFED 179 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 +V + +I L + + + +++ + RI + Sbjct: 180 QLVLRRCY-LSENTITLRADHKNIDDLEFPIQEVKELWRIRYV 221 >gi|330891562|gb|EGH24223.1| LexA repressor [Pseudomonas syringae pv. mori str. 301020] Length = 65 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 + Q + G ++ + G++ K L + + L+ N Y V Sbjct: 1 HRNPQASDGQIVVARLD-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 50 >gi|310815924|ref|YP_003963888.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308754659|gb|ADO42588.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 183 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + L+ LA++ G+ ++ + + PS S+ +IL Sbjct: 5 DIGGRLRALRMARGLSQRVLAKRVGVPNSTISLIESGRAN-----PSVGSLKRILDGLPI 59 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 60 GMAEFFAFDPEAQRQVF 76 >gi|118445169|ref|YP_879281.1| MerR family transcriptional regulator [Clostridium novyi NT] gi|118135625|gb|ABK62669.1| Transcriptional regulator, MerR family [Clostridium novyi NT] Length = 147 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + + LT S LA K L + + ++ R P+ + + KI A Sbjct: 2 NVGENIRKYRKEKGLTQSELAEKTHLATNTIQRYEKGH-----RQPTMQVLEKIADALGI 56 Query: 68 TICQLLDLPF 77 + +L Sbjct: 57 PVYRLTFNDE 66 >gi|77999999|ref|YP_358780.1| CI-like repressor [Lactobacillus phage Lc-Nu] gi|37826025|gb|AAR04646.1| CI-like repressor [Lactobacillus phage Lc-Nu] Length = 141 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 6/125 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ +I + ++ + R ++ S LAR+ + +S ++ R + K Sbjct: 1 MKTNDEIIKTLNDLRNREGISISELARRVDMAKSSVSRYFNGT-----REFPLNYVDKFA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 +A T + L KK Y P S G + T + T+ +P+ Sbjct: 56 SAL-HTTPESLIGVSPVDSFKVKKLNVHSYPYIPTEISAGILCNVDPLTSDDVETIQLPD 114 Query: 123 IRSPH 127 Sbjct: 115 SVMGR 119 >gi|307308188|ref|ZP_07587901.1| DNA-binding protein RdgA [Shewanella baltica BA175] gi|306909999|gb|EFN40449.1| DNA-binding protein RdgA [Shewanella baltica BA175] Length = 82 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 M P+ + G IL +N L + ++ K+L S I L S N Y +T Sbjct: 1 MEPVLKSGSILAVNPCQTRIDDGGLYVVKLGSELRVKIL-SLSNEGITLKSFNKQYLDET 59 Query: 207 VEMSDIE--WIARILWAS 222 V+ D+ ++ W S Sbjct: 60 VKQGDVRFSVEGKVFWFS 77 >gi|257484392|ref|ZP_05638433.1| ultraviolet light resistance protein RulA, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627284|ref|ZP_06460238.1| ultraviolet light resistance protein RulA, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650426|ref|ZP_06481769.1| ultraviolet light resistance protein RulA, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330869479|gb|EGH04188.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889099|gb|EGH21760.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv. mori str. 301020] gi|331013196|gb|EGH93252.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 90 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMS 210 R GD+L+++ + GD ++ + + L RG + L S + YP V + Sbjct: 7 RTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDVVILKSEHPDYPPLHVTDHD 64 Query: 211 DIEWIARI 218 D+ + + Sbjct: 65 DLIILGVV 72 >gi|308273674|emb|CBX30276.1| hypothetical protein N47_D30850 [uncultured Desulfobacterium sp.] Length = 433 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + + + + + + LA+ G+ ++ ++ + I +PS ++ KI Sbjct: 250 TQLDLGTRLKEIRSKRGFSQTELAKLIGVTSSTISQIESNQI-----YPSLPALIKIAET 304 Query: 65 T 65 Sbjct: 305 L 305 >gi|329769474|ref|ZP_08260885.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325] gi|328838805|gb|EGF88401.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325] Length = 130 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++K + + I + + +T LA + + +K +R +P T ++ KI Sbjct: 1 MTNKSMGDIISTLRKEKGMTQKDLADMLNITDKAVSKWERNIA-----FPDTATLPKIAE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 ++ +L++ G + ++ + G Sbjct: 56 IFGVSVEELMNAKSIPGNRHKGAPYLFNIILKAIPTAMGIA 96 >gi|50122315|ref|YP_051482.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] gi|49612841|emb|CAG76291.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] Length = 133 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 2/103 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + +T + LA K G+ + + R + S S+ +I + + E Sbjct: 26 LGERITTLRKERGITQAELAEKLGVSQQTVQAWEAGRR--RIKVSSLPSVAQIFSVSLEE 83 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + P R K ++ + S + Sbjct: 84 VFGEAPEPARRKRGPAPKWQQQMEEIDSLPKAKQKMISEMLSA 126 >gi|317049516|ref|YP_004117164.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316951133|gb|ADU70608.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 203 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 9/177 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I ID + + T + A + G+ + K EG+ +I +I Sbjct: 10 DNIINNIDYLIKSRGETKASFANRTGVTRATLYKIL----EGKVSNVQQSTITRIADFFG 65 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + ++ + + + + + + VG + P Sbjct: 66 VS----CEIIENCDLKHIEFIESTLSPDGDKNPAAIPVVPQSEFVSHMEKRVGHLVTQYP 121 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + + + ++ GD+LI+ + + GDI K Sbjct: 122 LTWYFGDVSNMIAMRVEKNIGN-MFFSGDVLIIRRHHPPKKKQIAIFYSQVGDIFLK 177 >gi|146297100|ref|YP_001180871.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410676|gb|ABP67680.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 5/95 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E N++ S LA G+ + + R P+ +++ KI T+ Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGH-----REPNFDTLLKIADYFGVTVDY 61 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 L+ + ++ + + D Sbjct: 62 LIGRSEYRTVEEQFSKRTKFERFVVENLPYVISDE 96 >gi|310826605|ref|YP_003958962.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308738339|gb|ADO35999.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 118 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 5/104 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ E + R+ E L+ +A G+ +S N+ ++ PS E++ + + Sbjct: 2 KELGERLRRLRESVKLSQVKMAELLGVKQSSINRYEQGQS-----APSLETLVRYADYFD 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 ++ LL + + +I P Sbjct: 57 VSLDYLLARTDNPQGKLYEHRPKIAPGSEEMKQFIEMCFDPQSP 100 >gi|148269420|ref|YP_001243880.1| cupin 2 domain-containing protein [Thermotoga petrophila RKU-1] gi|147734964|gb|ABQ46304.1| Cupin 2, conserved barrel domain protein [Thermotoga petrophila RKU-1] Length = 188 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 20/185 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + ++ LT LA + L + ++ + PS +++ +IL A Sbjct: 14 RIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKT-----SPSIDTLERILEALGT 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + +K+E+ S + P ++ Sbjct: 69 DLKHFFSDVEEERVVFKKEERVPVYDEPEGVKSEILMSGVEDKEIDPILVTLEPGAQTEE 128 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + Q D+ + + ++ GD K K + Sbjct: 129 ESYH--EGSEFGFVIQGRI--------DLYLDDKRYRLKEGDCFYYKADK-----KHYVK 173 Query: 188 RRGRS 192 G+ Sbjct: 174 NSGKK 178 >gi|90576555|ref|YP_534797.1| putative ultraviolet light resistance B protein RuvA [Pseudomonas putida] gi|90567908|dbj|BAE92131.1| putative ultraviolet light resistance B protein RulA [Pseudomonas putida] Length = 142 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 10/110 (9%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + P I A K + SM G LI++ + G + + Sbjct: 33 DYYEPPISLDELLNIRA--PHIWIVKVEGESMRDAGIFTGTRLIIDRTVTACSGHIV-MA 89 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221 V K L L S N Y V + +E + W+ Sbjct: 90 YVDNQPVVKRLAKSAAG-WTLESANPTYKA--VTPDEYSTVEVFGVVTWS 136 >gi|256397796|ref|YP_003119360.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364022|gb|ACU77519.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 223 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 10/142 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + R+ +R ++T + LA+K G+ ++ ++ + R P+ E + + Sbjct: 36 DRTLDAVGPRLKRLRQRSDITLTDLAKKTGISASTLSRLEAG-----LRRPTLEQLLPLA 90 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEI----PLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 A T+ +L+D P + + +L G V P G + Sbjct: 91 RAHGVTLDELVDAPPTGDPRLHLRPIACGDGSVILPLTRRPGGIQAYKFVLPAGRDDDAP 150 Query: 119 GVPEIRSPHNGIYAIQTQDTRH 140 P + + +Y + Sbjct: 151 D-PRTHAGFDWVYVLNGTLRLV 171 >gi|229020917|ref|ZP_04177610.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] gi|229022840|ref|ZP_04179361.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228738451|gb|EEL88926.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228740379|gb|EEL90684.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] Length = 107 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + + + ++ S F Sbjct: 58 VDTLLHDETTTESHLDSEWTQLVKDAMSSGVSKEQFRE 95 >gi|198283398|ref|YP_002219719.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247919|gb|ACH83512.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 152 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 3 SFSH-KKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 H I + I + +R LT + L + A GL ++ ++ + G + W + ++ K Sbjct: 1 MLDHMDDIGDRIKEIRKRLGLTQAELGKHAGGLSKSAVHQWENGGT--KPAWDALTALRK 58 Query: 61 ILAATNETICQ 71 L + + Q Sbjct: 59 NLGINPDWVMQ 69 >gi|310644824|ref|YP_003949583.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309249775|gb|ADO59342.1| Transcriptional regulator [Paenibacillus polymyxa SC2] Length = 114 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 5/81 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + + T LA AGL + +R +R S E++ KI+ A Sbjct: 5 ESVGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERG-----DRNISLETLEKIILALK 59 Query: 67 ETICQLLDLPFSDGRTTEKKE 87 +L + R E Sbjct: 60 VPPFELFQFDETTDRKQIINE 80 >gi|255021528|ref|ZP_05293572.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] gi|254969056|gb|EET26574.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] Length = 181 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 60/174 (34%), Gaps = 17/174 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + ++ E L+ L AG+ ++ ++ + + PS ++ KI A Sbjct: 2 EQLGRQLQKLREERQLSLRSLGELAGVSASAISQMEAGKV-----SPSIATLEKICNALG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP---TGNKWNTVGVPEI 123 I L D P D + E +Y S + + F ++ P Sbjct: 57 VHIASLFDEPQGDQGPILLRTNERRRVYSADSHASIEPLARNFAGKKMQPILISLE-PGG 115 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + ++ T+ + + D Q++ GD + PR Sbjct: 116 VCGEHPYTSAEGEEFAMLIAGTA---EFEQQD-----KRYQLSQGDAVYYDPRQ 161 >gi|225019677|ref|ZP_03708869.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] gi|224947522|gb|EEG28731.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] Length = 261 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + + L+ LA K G+ + +K + P E++ + Sbjct: 2 QLNEKLQILRKEAGLSQERLAEKLGVSRQAVSKWESGQST-----PDIENLSALSDLFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T+ +L+ + + Sbjct: 57 TLDELIKKESAPQPAQAVRPAY 78 >gi|323938205|gb|EGB34465.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Escherichia coli E1520] gi|323942720|gb|EGB38885.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Escherichia coli E482] Length = 191 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 40/221 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESI 58 MT K AI+RM E + T L G+ ++ + R E + Sbjct: 1 MTMNLEKGGRGAIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWV 53 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + T ++ L S + E+ G Sbjct: 54 IQCALETGTSLNWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDG 99 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 R + + + + G ++ G Sbjct: 100 FYIFDREFLPSAFKN------LFVITDNNSEFICDKEF------DDIRDGKWVISID--G 145 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +I + + G I + N + ++ DIE I +I+ Sbjct: 146 EITIRDITRLPGGRIFVEGGNRAF---ECKIEDIEIIGKII 183 >gi|153847580|ref|ZP_01993943.1| LexA repressor [Vibrio parahaemolyticus AQ3810] gi|149744723|gb|EDM56191.1| LexA repressor [Vibrio parahaemolyticus AQ3810] Length = 173 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 3/119 (2%) Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150 LL + G G G E + D + SM + Sbjct: 36 LLEDAANDEQGLPLIGQVAAGEPILAQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIG 95 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 GD+L ++ V G + + D+ K L + G ++ L + N + V++ Sbjct: 96 IMDGDLLAVHKTQDVRDGQVV-VARVDDDVTVKRLERK-GSTVLLHAENEEFAPIQVDL 152 >gi|15838718|ref|NP_299406.1| hypothetical protein XF2127 [Xylella fastidiosa 9a5c] gi|9107257|gb|AAF84926.1|AE004027_8 phage-related protein [Xylella fastidiosa 9a5c] Length = 339 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 53/231 (22%), Gaps = 18/231 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ D A LT +A + I S + L Sbjct: 106 KRLHAQWDERAFSSGLTQKEIAEILDSTQDLATQYLTRKIPLDYETLSL--FSRALNTAP 163 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP---EI 123 E I + + + V + Sbjct: 164 EIIRGTSQKQGVMEPQGVMESSTSNENSWADVRTYSQQMGLGTTGPEIAENVDIHTVKFR 223 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG----D 179 R N I SMLP + GD ++ + + + + G + Sbjct: 224 RDSLNKHNLIPNNLVIMHGAGDSMLPYIQSGDSIMFDESDTTPHHKHIYVIITPGAGADE 283 Query: 180 IVAKVLISRR--GRSIDLMSLNCC-YPVDTVEM--SD----IEWIARILWA 221 K I + + + N + D I+ I R+ W Sbjct: 284 YNVKRCIIDDKHSKRVFFAADNPEGDHDWQLPRWKDDPNYPIKIIGRVRWV 334 >gi|320324808|gb|EFW80880.1| ultraviolet light resistance protein RulA, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320329174|gb|EFW85171.1| ultraviolet light resistance protein RulA, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330881546|gb|EGH15695.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv. glycinea str. race 4] Length = 90 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMS 210 R GD+L+++ + GD ++ + + L RG + L S + YP V + Sbjct: 7 RTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDVVILKSEHPDYPPLHVTDHD 64 Query: 211 DIEWIARI 218 D+ + + Sbjct: 65 DLIILGVV 72 >gi|301052920|ref|YP_003791131.1| transcriptional regulator [Bacillus anthracis CI] gi|300375089|gb|ADK03993.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 107 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + + + ++ S F Sbjct: 58 VDTLLHDETTKENHLDSEWTQLVKDAMSSGVSKEQFRE 95 >gi|325276625|ref|ZP_08142361.1| transcriptional regulator [Pseudomonas sp. TJI-51] gi|324098243|gb|EGB96353.1| transcriptional regulator [Pseudomonas sp. TJI-51] Length = 233 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 26/230 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + LTPS A + G+ P N + R + ++ Sbjct: 5 GDRLRALLHECGLTPSDFAAQRGVTPQHVNNWVK-------RGVPLARLDEMADLFCVHR 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-----------V 118 L + + L+ P + + Sbjct: 58 RWLHTGEGPKHPSPILRNARPRKLHTPAPSPLLVDHGRLVKVPYYELHDGLLSPVASKPL 117 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P G+ A D++MLPL + +L+++ ++ G Sbjct: 118 RLPAKALQGLGVRA--DDAISVTMPDSNMLPLIPQEAVLVIDVSMTQVFQGETYALLHNG 175 Query: 179 DIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222 + L + ++ L S Y V+ + +E + + S Sbjct: 176 ALRVNTLSLGQHGTLYLHSQDRRNYAVERYTPAQRQAQGLEVLGWVFHWS 225 >gi|146280879|ref|YP_001171032.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145569084|gb|ABP78190.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] gi|327479148|gb|AEA82458.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 182 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 6/138 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA++AG+ ++ + ++ + PS S+ K+L+ Sbjct: 2 DVGVRLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLSGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126 ++ + F T+ K L+ P + P Sbjct: 57 SLVEFFSPDFDQDSDTQVVYKGSELIDISDGAVSMKLVGKAHPGRAIAFLDETYPPGSDT 116 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + Q ++ + Sbjct: 117 GMDMLSHQGEEAGMLVEG 134 >gi|92113496|ref|YP_573424.1| SOS mutagenesis protein UmuD [Chromohalobacter salexigens DSM 3043] gi|91796586|gb|ABE58725.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Chromohalobacter salexigens DSM 3043] Length = 146 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 41/139 (29%), Gaps = 9/139 (6%) Query: 87 EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI------RSPHNGIYAIQTQDTRH 140 ++ + + P+ + + P + + Sbjct: 1 MRDPEIRHPHPAPPYRALPHPLVTIRAGISGFPSPAEDYVGRTLDLNERLVKRPAATFFM 60 Query: 141 KTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 SM+ + GD L+++ +I G ++ G+++ K GR L S N Sbjct: 61 TVAGDSMVDFGIQDGDTLVVDRSIDAKPGHIVVALVD-GEVIVKRYEII-GRRPYLCSGN 118 Query: 200 CCYPVDTVEMSDIEWIARI 218 Y + + + + Sbjct: 119 FQYAPIPLANIECQVWGVV 137 >gi|15676898|ref|NP_274044.1| hypothetical protein NMB1009 [Neisseria meningitidis MC58] gi|7226249|gb|AAF41410.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|325206162|gb|ADZ01615.1| conserved domain protein [Neisseria meningitidis M04-240196] gi|325208040|gb|ADZ03492.1| conserved domain protein [Neisseria meningitidis NZ-05/33] Length = 64 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222 L + + K + + S+ L+S N YP + ++ DI+ I +++ S Sbjct: 2 NNYYLYRNCSSDVLWVKRIQRQIDGSLLLISDNSTYPPMPLALAEHPDIQIIGQVVQVS 60 >gi|327441218|dbj|BAK17583.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 180 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 14/166 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + LT L + L ++ +R PS E++F +L Sbjct: 2 QIGSKIKALRIKKGLTQEELGERTDLSKGYISQLERDLN-----SPSIETLFNLLEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T D + + K+ + + V + + Sbjct: 57 TPRDFFDDTQENEKIVFT--KDDQTCFIDQDKKYEIEWLIPTSNEKEMEPVFITLQKDAE 114 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + +T Q+ + + + + + GD + Sbjct: 115 FKAFEPSLAETFIYVQNGRIRVVLGNDEYI-------ASEGDAVYY 153 >gi|326382822|ref|ZP_08204512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326198412|gb|EGD55596.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 186 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 22/186 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + L+ S LAR+A + + ++ + R P+ E+++ + A + Sbjct: 6 IGDRLRELRAARGLSLSELARRADIGKATLSEIESG-----RRNPNIETLYALCAPLDVP 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L T + L FP G P + Sbjct: 61 LTGMLGETPGTHGTAAGGMVTVLLSTRHLPAETVEVFRLEFPAGA---HHVSPAHGAGVR 117 Query: 129 GIYAIQTQDTRHKTQDTSMLPLY----------RKGDILILNSAIQVNCGDRLLIKPRTG 178 A+ T+ P D + ++ P Sbjct: 118 EQLAVVAGTLTV---GTADAPTIVHRGDCHAWTSDTDHVFSAPDGPAEAI-VVISTPHAH 173 Query: 179 DIVAKV 184 + K Sbjct: 174 ENRTKQ 179 >gi|238062141|ref|ZP_04606850.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883952|gb|EEP72780.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 189 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 5/124 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E ++ S LAR AG+ + + + R P+ E+++ + A Sbjct: 22 VGARVRALREERGMSLSTLARLAGVGKATLSGLENGT-----RNPTLETLYAVTAQLGVP 76 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L P + L F + + G + + H Sbjct: 77 LTAALSGPAATPTVRGTAVSATLLEVFTEAEATFELYRMRVAPGVGQLSPAHQPGVTEHV 136 Query: 129 GIYA 132 ++A Sbjct: 137 TVFA 140 >gi|187919377|ref|YP_001888408.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717815|gb|ACD19038.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 183 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 62/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + +++ L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVATRLQYIRKKNGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + R+ + ++P L S V P + Sbjct: 59 SLAEFFTFEVEVERSVVSRRADMPNLGNESIEFYLAGSSVKDRNMGILREVYQP-LSDTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + L + G +L+ GD + R + Sbjct: 118 PEMLEHEGHEGGVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 + +++S N Sbjct: 166 PSADHLCEIVSANS 179 >gi|295094003|emb|CBK83094.1| nucleotide sugar dehydrogenase [Coprococcus sp. ART55/1] Length = 493 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 5/86 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ + + + +T + LA G++ ++ ++ ++ PS E + Sbjct: 1 MKKLSQSRLADTVMNGRKEKGMTQAQLADATGINRALISRIEQ-----KDFVPSIEQLES 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86 + N + ++ + + Sbjct: 56 LSEVLNFDLTEMFINAGAHKLESPSP 81 >gi|115353089|ref|YP_774928.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170702522|ref|ZP_02893400.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|172061941|ref|YP_001809593.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115283077|gb|ABI88594.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] gi|170132560|gb|EDT01010.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171994458|gb|ACB65377.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 183 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + R+ + E+P L + P + Sbjct: 59 SLAEFFTFELVESRSVVSRRDEMPNLGNDTLAFHLVGAGVKDRNMCIMREIYQP-LADTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + L + +L+ GD + R + Sbjct: 118 PEMLVHAGHEGGVVVSGRLELTV--DSATWLLDP------GDGYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 + +++S N Sbjct: 166 PSAEQLCEVVSANS 179 >gi|229166214|ref|ZP_04293974.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] gi|228617312|gb|EEK74377.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] Length = 107 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + + + ++ S F Sbjct: 58 VDTLLHDETTTESHLDSEWTQLVKDAMSSGVSKEQFRE 95 >gi|209515409|ref|ZP_03264275.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209504129|gb|EEA04119.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 204 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 14/125 (11%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + + + H L+ + LA +AG+ + ++ +R R E + + L Sbjct: 16 HGDVGTRLRALRIAHGLSVNELAMRAGVSVGTVSQVERNKANPSVRI--LERLRQALEVP 73 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLY------------FPPSGSGGFFDSGVFPTGN 113 + + D ++ L+ P + P G+ Sbjct: 74 LTALLEEDDAVSDPVTGDFVRKAAERPLFEVGKNGMQKELLSPHGDHDLQMMIIMLPAGS 133 Query: 114 KWNTV 118 V Sbjct: 134 GSEEV 138 >gi|283785313|ref|YP_003365178.1| transcriptional regulator [Citrobacter rodentium ICC168] gi|282948767|emb|CBG88362.1| putative transcriptional regulator [Citrobacter rodentium ICC168] Length = 178 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLKTLRSQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P S T +++ ++ G + Sbjct: 55 IATGLNVPFSTFIAPPESTRLPTFDPQQQAMVVTPLFPWDPELCFDHFSILLAPGALSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHEAGVIEH 124 >gi|302869679|ref|YP_003838316.1| nickel-type superoxide dismutase maturation protease [Micromonospora aurantiaca ATCC 27029] gi|315503839|ref|YP_004082726.1| nickel-type superoxide dismutase maturation protease [Micromonospora sp. L5] gi|302572538|gb|ADL48740.1| nickel-type superoxide dismutase maturation protease [Micromonospora aurantiaca ATCC 27029] gi|315410458|gb|ADU08575.1| nickel-type superoxide dismutase maturation protease [Micromonospora sp. L5] Length = 112 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL--LIKPRTGDI 180 +P A++ SM P R GD +++ V GD + + + R + Sbjct: 1 MAPTGEPPALRGPLVPVLVTGPSMAPTLRHGDAVLVRTKGRPVRPGDVVVAVFRSRPDLL 60 Query: 181 VAKVLISRRGRSIDLMSLNC--CYPVDTVEMSDIEWIARIL--WA 221 V K + R L N ++D+ R++ W Sbjct: 61 VVKRAVEPRDGGWWLRGDNEFVADDSRAYGVADVR--GRVVARWW 103 >gi|307822273|ref|ZP_07652505.1| Peptidase S24/S26A/S26B, conserved region [Methylobacter tundripaludum SV96] gi|307736839|gb|EFO07684.1| Peptidase S24/S26A/S26B, conserved region [Methylobacter tundripaludum SV96] Length = 81 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205 DIL+++ +I+ G L+ G++ K L + L + N Y Sbjct: 6 IHPNDILVVDRSIEPLPGKILICALN-GELTVKRLDRYNDQ-WQLKAENPNYAEL 58 >gi|308071595|ref|YP_003873200.1| transcriptional regulator yazB [Paenibacillus polymyxa E681] gi|305860874|gb|ADM72662.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus polymyxa E681] Length = 114 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 5/79 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + T LA AGL + +R +R S E++ KI+ A N Sbjct: 7 VGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERG-----DRNISLETLEKIILALNVP 61 Query: 69 ICQLLDLPFSDGRTTEKKE 87 +L + R E Sbjct: 62 AFELFQFDENTDRKQIINE 80 >gi|270294200|ref|ZP_06200402.1| transcriptional regulator [Bacteroides sp. D20] gi|270275667|gb|EFA21527.1| transcriptional regulator [Bacteroides sp. D20] Length = 269 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 23/228 (10%) Query: 3 SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I E I ++ ++ + A G + + + P + + KI Sbjct: 1 MQKDETIHERITQLVNKYGNGKNTVFASLIGSNEANVRGYRTST------MPKFDFLEKI 54 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG----NKWNT 117 + + LL S + + L G + + Sbjct: 55 ARNIDINLDWLLTGRGSM--EKQPPKSSFALSQINNDFVSIPLVDISVAAGCCGYDNPDY 112 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLL 172 + V + + + + + + SM P +I+ + + Sbjct: 113 LEVVDTIKMPSSMVRNSEKYFCVRIKGESMSPTLLDSSYVIVRLLDRSEWQDMPDQHIYV 172 Query: 173 IKPRTGDIVAKVL--ISRRGRSIDLMSLNCC---YPVDTVEMSDIEWI 215 I G K + R+ + MS N YP +E +I I Sbjct: 173 ISDTDGRSYIKRIKNRFRQHGFLVCMSDNVDKINYPNFNLEAQEINTI 220 >gi|260172733|ref|ZP_05759145.1| hypothetical protein BacD2_12771 [Bacteroides sp. D2] gi|315921023|ref|ZP_07917263.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694898|gb|EFS31733.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 237 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 20/209 (9%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA G+ + + RN + K + L Sbjct: 24 SELAEYLGVSRATVSNW-----GARNSIDFRLLLDKFGDKVDYNWLLLGKGNPKHQSRYC 78 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------ 138 + E + + T + + YA+ Sbjct: 79 ESELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANLKTLFTNKKQYALGKILIPNISVC 138 Query: 139 --RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL---LIKPRTGDIVAKVLIS-RR 189 SM P+ + GDI+ ++S V G+ + + K + + Sbjct: 139 DGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSFMIDGDEYLAVKYVNRSDK 198 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S N + + + I +A + Sbjct: 199 EGYLKLVSYNTHHEPMDIPFAVINAMAIV 227 >gi|329940155|ref|ZP_08289437.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] gi|329300981|gb|EGG44877.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] Length = 509 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T S LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|302541927|ref|ZP_07294269.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459545|gb|EFL22638.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 509 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T S LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|217958856|ref|YP_002337404.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|222095015|ref|YP_002529075.1| transcriptional regulator sinr [Bacillus cereus Q1] gi|229138068|ref|ZP_04266666.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|229172021|ref|ZP_04299586.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|217067870|gb|ACJ82120.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|221239073|gb|ACM11783.1| transcriptional regulator SinR [Bacillus cereus Q1] gi|228611364|gb|EEK68621.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|228645413|gb|EEL01647.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|324325398|gb|ADY20658.1| transcriptional regulator SinR [Bacillus thuringiensis serovar finitimus YBT-020] Length = 107 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + + + ++ S F Sbjct: 58 VDTLLHDETTKENHLDSEWTQLVKDAMSSGVSKEQFRE 95 >gi|325919915|ref|ZP_08181904.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549624|gb|EGD20489.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 461 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 6 PPLRH-QLGLRLQRLRQRHGLTQAELARRLALSPSYLNQIERNQRP 50 >gi|228899959|ref|ZP_04064198.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] gi|228964335|ref|ZP_04125453.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228795344|gb|EEM42833.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859670|gb|EEN04091.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] Length = 107 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 >gi|218235129|ref|YP_002366064.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228938496|ref|ZP_04101105.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971375|ref|ZP_04132001.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977987|ref|ZP_04138367.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|229108836|ref|ZP_04238441.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|229149581|ref|ZP_04277813.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|218163086|gb|ACK63078.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228633927|gb|EEK90524.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|228674605|gb|EEL29844.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|228781775|gb|EEM29973.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|228788242|gb|EEM36195.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821233|gb|EEM67249.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939004|gb|AEA14900.1| SinR protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 107 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 >gi|148381499|ref|YP_001256040.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153933346|ref|YP_001385874.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936871|ref|YP_001389281.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148290983|emb|CAL85119.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152929390|gb|ABS34890.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932785|gb|ABS38284.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 220 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 14/217 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65 ++ + I + LT LA+K G+ N+ + + S + K + Sbjct: 3 RVSDKIKEARLKKGLTQKQLAKKLGVAENFINEIESGRKIINESLMNRISKVLGKGINDI 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + L + K K + S + + +P + + Sbjct: 63 GISFEEEVSLEPKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVVGN 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 GI+ Q + K ++ M KGDI ++ + + Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNNKRSVRQ 179 Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217 L G I L +SL + V + DI+ IAR Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212 >gi|9858108|gb|AAG00996.1|AF287346_1 regulator SinR [Bacillus thuringiensis] Length = 107 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 >gi|323963980|gb|EGB59472.1| helix-turn-helix protein [Escherichia coli M863] gi|327254078|gb|EGE65707.1| helix-turn-helix family protein [Escherichia coli STEC_7v] Length = 178 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCEEGARFAADVTHVYRNGG 163 >gi|229029051|ref|ZP_04185150.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] gi|228732331|gb|EEL83214.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] Length = 107 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + + + ++ S F Sbjct: 58 VDTLLHDETTKENHLDSEWTQLVKDAMSSGVSKEQFRE 95 >gi|171320839|ref|ZP_02909842.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171093917|gb|EDT39035.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 183 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + R+ + E+P L + P + Sbjct: 59 SLAEFFTFELVESRSIVSRRDEMPNLGNDTLAFHLVGAGVKDRNMCIMREIYQP-LADTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + L + +L+ GD + R + Sbjct: 118 PEMLVHAGHEGGVVVSGRLELTV--DSATWLLDP------GDGYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 + +++S N Sbjct: 166 PSAEQLCEVVSANS 179 >gi|227539936|ref|ZP_03969985.1| phage repressor [Sphingobacterium spiritivorum ATCC 33300] gi|227240214|gb|EEI90229.1| phage repressor [Sphingobacterium spiritivorum ATCC 33300] Length = 230 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 18/219 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + +A K G+ P + N + + I K + + Sbjct: 2 IGNDLKIRLKNLGYELKEIAEKMGISPQALN---SKFASDDLKVSFLQQIAKSINKSVYF 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + T E+ L+ + + RS Sbjct: 59 LMEEPGPITNVIETKEEGVSRSEFLFRTDKLMHNQIIPLYDVHASASLITLFQQDRSTVV 118 Query: 129 GIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRL---LIKPRTG 178 ++I D SM P+ + GDI+ + G+ + Sbjct: 119 DYFSIPNMPKVDGAMAITGDSMYPILKSGDIIFFRKINNFMENLFFGEMYLLDISNDDDD 178 Query: 179 DIVAKVLIS--RRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 K + + R I ++S N + + +S WI Sbjct: 179 YTTVKYVQTSDRGPDWIKIVSQNQHHSSKDIHLS---WI 214 >gi|169826912|ref|YP_001697070.1| hypothetical protein Bsph_1332 [Lysinibacillus sphaericus C3-41] gi|168991400|gb|ACA38940.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 180 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 8/138 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + LT L + L ++ +R PS E++F IL Sbjct: 2 QIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLN-----SPSIETLFSILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T + D + + + E ++ + + + + Sbjct: 57 TPKEFFDDESPEQKVVYTE--EDQSIFTDEEKKYEIQWLIPTSNEKEMEPIFLTFEANGE 114 Query: 128 NGIYAIQ-TQDTRHKTQD 144 + ++ + + Sbjct: 115 FKQFEPSLSETFIYVVKG 132 >gi|331672348|ref|ZP_08373139.1| repressor protein [Escherichia coli TA280] gi|331070543|gb|EGI41907.1| repressor protein [Escherichia coli TA280] Length = 191 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 40/221 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESI 58 MT K AI+RM E + T L G+ ++ + R E + Sbjct: 1 MTMNLEKGGRGAIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWV 53 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + T ++ L S + E+ G Sbjct: 54 IQCALETGTSLNWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDG 99 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 R + + + + G ++ G Sbjct: 100 FYIFDREFLPSAFKN------LFVITDNNFEFICDKEF------DDIRDGKWVISID--G 145 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 +I + + G I + N + ++ DIE I +I+ Sbjct: 146 EITIRDITRLPGGRIFVEGGNRAF---ECKIEDIEIIGKII 183 >gi|307325149|ref|ZP_07604353.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889295|gb|EFN20277.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 509 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T S LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|241896321|ref|ZP_04783617.1| repressor lexA [Weissella paramesenteroides ATCC 33313] gi|241870301|gb|EER74052.1| repressor lexA [Weissella paramesenteroides ATCC 33313] Length = 191 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 5/105 (4%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + P +++ + +ML + D LI+ V GD +++K Sbjct: 83 DETKEPVTNITIQNLFSFDDDTFILQQHSNTMLNIGILNNDYLIVKKQKSVVNGDIIVVK 142 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 V + + G L N +E + R++ Sbjct: 143 INEMTNVYRYF--KEGTHCRLQPENSNLKPVIIENP--TILGRVV 183 >gi|262376873|ref|ZP_06070100.1| RumA [Acinetobacter lwoffii SH145] gi|262308218|gb|EEY89354.1| RumA [Acinetobacter lwoffii SH145] Length = 165 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 3/97 (3%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + K SM D LI++ +I D ++ D Sbjct: 61 LDMNEHLIRNEAATFVVKVASLSMRDAGIEIDDELIVDRSIDAKHEDIVIALID-NDFTV 119 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K L+ L + N ++ I ++ Sbjct: 120 KRLMIENNYR-WLKAENPDCSDIHLQDGQEMVIWGVV 155 >gi|254513121|ref|ZP_05125187.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221533120|gb|EEE36115.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 193 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 15/150 (10%), Positives = 48/150 (32%), Gaps = 9/150 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + +I + R+ + +LT + LA +A + ++ + + PS ++ + Sbjct: 5 KTETELEIGRTLQRLRQERSLTVTELAARAKVSTPMISRIENGHV-----SPSLGTLQAL 59 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----WNT 117 A + ++ L + + +G + +G Sbjct: 60 ADALSVSMMALFSHTANAADVHHVQSGNGLPSRRVTNGHAHDYLLLGKHSGPGGSFQSAR 119 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 + +P+ Y + + + ++ Sbjct: 120 IRIPKQNPDSLPSYQHEGYVFIYMIEGDAI 149 >gi|218513526|ref|ZP_03510366.1| probable transcriptional regulator protein, LacI family [Rhizobium etli 8C-3] Length = 219 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I ++ LT LA +G+ ++ +R P+ + + Sbjct: 1 MEEQLEQAIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I AA ++ +++ + + + V Sbjct: 56 ICAALGLSLSAFFAEEGQQASPLARRQDQQVWRDPETGYLRRSVSAPGTASDVDIVEVEF 115 Query: 121 PEIRSPHNGIYA 132 P +A Sbjct: 116 PAGARVSFPPHA 127 >gi|302554854|ref|ZP_07307196.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302472472|gb|EFL35565.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 509 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I + T S LA G ++ N+ +R S E I +I A Sbjct: 8 RIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|220926324|ref|YP_002501626.1| putative phage repressor [Methylobacterium nodulans ORS 2060] gi|219950931|gb|ACL61323.1| putative phage repressor [Methylobacterium nodulans ORS 2060] Length = 245 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 51/219 (23%), Gaps = 26/219 (11%) Query: 10 WEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + A + G +++ + R + + Sbjct: 29 GERLRLARLAAGYRSARDAALRNGWPESTYRAHEAGT-----RTMGQDDAERYAERFRRD 83 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 Q+ G + S Sbjct: 84 GVQVTAKGLLFGDDEAAEPPGDG----AQVVGVRGVISAGGLIATGDEQPDPSGNLFEVT 139 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVL 185 +A+ + SM P Y DI++ + + G + G+ K + Sbjct: 140 VPFALPPGTIAFRVAGGSMHPKYEPDDIVLCAQAGESPERLVGCYAAVATADGNRFLKKI 199 Query: 186 IS-RRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222 + R + L S N P R++WAS Sbjct: 200 LRGSRRGTYHLESHNAPLMPDR-----------RLVWAS 227 >gi|30019433|ref|NP_831064.1| SinR protein [Bacillus cereus ATCC 14579] gi|206967979|ref|ZP_03228935.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228920093|ref|ZP_04083442.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228951761|ref|ZP_04113860.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043120|ref|ZP_04190847.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|229068931|ref|ZP_04202225.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|229078565|ref|ZP_04211123.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|229126696|ref|ZP_04255708.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|229143985|ref|ZP_04272401.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|229177788|ref|ZP_04305161.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|296501962|ref|YP_003663662.1| SinR protein [Bacillus thuringiensis BMB171] gi|29894977|gb|AAP08265.1| SinR protein [Bacillus cereus ATCC 14579] gi|206736899|gb|EDZ54046.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228605579|gb|EEK63027.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|228639382|gb|EEK95796.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|228656636|gb|EEL12462.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|228704709|gb|EEL57137.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|228714215|gb|EEL66096.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|228726212|gb|EEL77442.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|228807883|gb|EEM54403.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839549|gb|EEM84841.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296323014|gb|ADH05942.1| SinR protein [Bacillus thuringiensis BMB171] Length = 107 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 >gi|290243024|ref|YP_003494694.1| helix-turn-helix domain protein [Thioalkalivibrio sp. K90mix] gi|288945529|gb|ADC73227.1| helix-turn-helix domain protein [Thioalkalivibrio sp. K90mix] Length = 199 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 29/194 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K + I + + + LA+ G+ P S + G + E++ + Sbjct: 1 METEIKKALGVQIQQRLAQVGRSKRWLAQAVGVSPASVTGWVQDG------HITIENLCR 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A + L+ + S T + G G Sbjct: 55 VAGALGVSTQWLMGISVSGEHT----------------QAHGQAAVYGSTAGVATE---- 94 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGD 179 P G A + K + P YR G++L+L+ G D LL +G+ Sbjct: 95 PTGHLDTGGPIAPE--YWALKVAGVELDPRYRDGEVLLLDRIKPPVPGTDVLLYSKESGE 152 Query: 180 IVAKVLISRRGRSI 193 + L++ ++ Sbjct: 153 ARVRALVADTSDAV 166 >gi|255008916|ref|ZP_05281042.1| hypothetical protein Bfra3_07237 [Bacteroides fragilis 3_1_12] gi|313146657|ref|ZP_07808850.1| predicted protein [Bacteroides fragilis 3_1_12] gi|313135424|gb|EFR52784.1| predicted protein [Bacteroides fragilis 3_1_12] Length = 279 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 26/214 (12%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + +A G+ T ++ ++ T+ I + + + +L R Sbjct: 25 NKAEIAESLGIGATRLSEILNNRMKA-----GTDLIACLCFKYDISSDWILMGKGPMFRD 79 Query: 83 TEKKEKEIPL-------LYFPPSGSGGFFDSGVFPTG-NKWN---TVGVPEIRSPHNGIY 131 + E + + G + ++ + V ++ + + Sbjct: 80 NKISEGPKQVHIPDTIPILSNEDFISIPLVEISVAAGCSGYDNPSYLDVIDVIKMPSTML 139 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD----RLLIKPRTGD-IVAKVLI 186 Q + + SM P +I + + G + I K + Sbjct: 140 KNNGQYFCIRVKGESMTPTILDSSYIIARTLDRSEWGHMPDRHVYIISDRDGRAYLKRVK 199 Query: 187 SR--RGRSIDLMSLNCC---YPVDTVEMSDIEWI 215 +R I MS N YP +E +I I Sbjct: 200 NRLSNSGFIVCMSDNVDKLNYPNFNLEEQEINCI 233 >gi|269929183|ref|YP_003321504.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788540|gb|ACZ40682.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 5/115 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S ++I A+ + ER T + LA ++G+ + + ++ PS ++ ++ Sbjct: 13 RSRQQIGPALRALRERRGWTLAQLAAESGVSRSQVWRLEQGQNV-----PSYLTLARLAK 67 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 A I + + + P F G+ G + + Sbjct: 68 ALEVEINYFTSFESTATELDRDLSSYLRRVGVPEDTWAEFGRLGLEARGALLDAL 122 >gi|30261384|ref|NP_843761.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47526558|ref|YP_017907.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49184213|ref|YP_027465.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49479785|ref|YP_035509.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144053|ref|YP_082775.1| transcriptional regulator [Bacillus cereus E33L] gi|65318649|ref|ZP_00391608.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870458|ref|ZP_02215113.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167634445|ref|ZP_02392766.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|167639233|ref|ZP_02397505.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|170686721|ref|ZP_02877941.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|170706389|ref|ZP_02896850.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|177651426|ref|ZP_02934215.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190568774|ref|ZP_03021678.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196040706|ref|ZP_03108005.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|196046437|ref|ZP_03113662.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|218902488|ref|YP_002450322.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225863243|ref|YP_002748621.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227815879|ref|YP_002815888.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228913951|ref|ZP_04077575.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926412|ref|ZP_04089484.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932662|ref|ZP_04095536.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944980|ref|ZP_04107341.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090334|ref|ZP_04221578.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|229120921|ref|ZP_04250163.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|229183574|ref|ZP_04310798.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|229600133|ref|YP_002865801.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] gi|254682559|ref|ZP_05146420.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254726220|ref|ZP_05188002.1| transcriptional regulator [Bacillus anthracis str. A1055] gi|254733977|ref|ZP_05191691.1| transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254740336|ref|ZP_05198027.1| transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254753723|ref|ZP_05205758.1| transcriptional regulator [Bacillus anthracis str. Vollum] gi|254758819|ref|ZP_05210846.1| transcriptional regulator [Bacillus anthracis str. Australia 94] gi|30255238|gb|AAP25247.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47501706|gb|AAT30382.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49178140|gb|AAT53516.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49331341|gb|AAT61987.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977522|gb|AAU19072.1| transcriptional regulator [Bacillus cereus E33L] gi|164713953|gb|EDR19475.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167512672|gb|EDR88046.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|167530333|gb|EDR93059.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|170128923|gb|EDS97789.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|170669244|gb|EDT19987.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|172082704|gb|EDT67767.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190560190|gb|EDV14171.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196022621|gb|EDX61303.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|196028496|gb|EDX67104.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|218539564|gb|ACK91962.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225790845|gb|ACO31062.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227003466|gb|ACP13209.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228599984|gb|EEK57580.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|228662581|gb|EEL18179.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|228693028|gb|EEL46745.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|228814649|gb|EEM60909.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826980|gb|EEM72740.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833236|gb|EEM78801.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845673|gb|EEM90700.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264541|gb|ACQ46178.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] Length = 107 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 + LL + + + + Sbjct: 58 VDTLLHDETTKEANLDSEWTQ 78 >gi|254884591|ref|ZP_05257301.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837384|gb|EET17693.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 224 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 17/220 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ + +T +A G++ T+ + + R S + I + N ++ Sbjct: 1 MTTLRQIIKNQGVTNKVVADALGIESTNIGRY----DDLSKRKLS--ELITISKSLNMSL 54 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPEIRSPH 127 +L+ SD E+ Y G + K V + Sbjct: 55 SELIQQSVSDDVELEEVTIINRPKYTEKVEENGELYLYDIEAAANLKSLLVNKDQNILGK 114 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRL-LIKPRTGD--I 180 I I D + SM PL + GDI+ + G+ + G+ + Sbjct: 115 ISIPNIPKCDGAVYVKGDSMYPLLKSGDIIAYKEVPVEIQHIFYGEMYLVSIDIEGEEYL 174 Query: 181 VAKVLISRRGR--SIDLMSLNCCYPVDTVEMSDIEWIARI 218 K + I L+S N + +S + +A + Sbjct: 175 TVKYINQSERGCEWIKLVSYNQHHQPKDFPLSSVRALALV 214 >gi|187933619|ref|YP_001884331.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|187721772|gb|ACD22993.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] Length = 222 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 68/216 (31%), Gaps = 10/216 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + E++ L+ L +K G+ N + E + K L Sbjct: 3 RVGEKIKQAREKNGLSAKVLGKKLGVAEKYINDIELGRKVAN--EAFIERVSKFLKTDLN 60 Query: 68 TIC------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 I +L+ + + K ++ + + + N T + Sbjct: 61 DINMVVTDEELMKEKEAFKKIVNTKAEKSEVWTDAFASVIKNVPIYNYSLSNTKGTRELT 120 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + G Q + + ++ M L ++ + + + G+ Sbjct: 121 VHSNKVEGY--PQDKVLYLQIENDDMSGFRILKGDLAFAHMVKEFSNNGIFLIDHKGERK 178 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + + S + L+S +T E+ +I IA+ Sbjct: 179 IRQIRSLGNSKVLLISNGGSLITETTEIKEINIIAK 214 >gi|317403702|gb|EFV84189.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 189 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 16/141 (11%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +H + + R+ + L+ LA +G+ + S S+ K+ Sbjct: 15 LTH--VGANLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSN-----ISLSSLDKLAQ 67 Query: 64 ATNETICQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 A + ++ + LL P+ G Sbjct: 68 ALEVGFVDLVSDPAPERRRIEARAWRGKRPGSQAMLLGAAPASCEAQLWLWTLAPG--ET 125 Query: 117 TVGVPEIRSPHNGIYAIQTQD 137 V P+ H IY I+ Sbjct: 126 YVAEPDPEGWHEMIYVIEGTL 146 >gi|327473016|gb|EGF18443.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 158 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + + LT +A K G+ ++ + + R P E++ K N + Sbjct: 42 ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESG-----KRKPGEETLKKFADFFNVS 94 >gi|225387376|ref|ZP_03757140.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM 15981] gi|225046508|gb|EEG56754.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM 15981] Length = 1690 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 49/180 (27%), Gaps = 8/180 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + LT + LA + G+ + ++ + +G S E + K LA Sbjct: 29 ELAEQIKALRIARGLTQNDLAERMGVPQSQVSRWEN---KGGCEIESLERLCKALAQIRV 85 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPEIRSP 126 + + T ++E I + S + G + + + P Sbjct: 86 VKVKAWIWKNLEINTGVQQELSIYAEFELYSWAEGSAGREDGNRAESIRQYLELRFPF-P 144 Query: 127 HNGIYAIQTQDTRHKTQDTS-MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + + L + ++ + Sbjct: 145 AKKAHTKSGVKFLISVDGEAQSAQGILDRPEASVR--WTLYELQHYLCRGERDSLLIRRY 202 >gi|224823652|ref|ZP_03696761.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224604107|gb|EEG10281.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 132 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I ER + + LA++AG+ T+ +R + K+ Sbjct: 22 LGTRIKAERERRGWSQAALAQRAGISQTTVADLERGTSAATTKLIPIARALKV 74 >gi|188590670|ref|YP_001919515.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188500951|gb|ACD54087.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 222 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 68/216 (31%), Gaps = 10/216 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + E++ L+ L +K G+ N + E + K L Sbjct: 3 RLGEKIKQAREKNGLSAKVLGKKLGVAEKYINDIELGRKVAN--EAFIERVSKFLKTDLN 60 Query: 68 TIC------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 I L+ + +T K ++ + + + N T + Sbjct: 61 DINMVVTDEDLMKEKEAFKKTVNTKVEKSEVWTDAFASVIKNVPIYNYSLSNTKGTRELT 120 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + G Q + + ++ M L ++ + + + G+ Sbjct: 121 VHSNKVEGY--PQDKVLYLQIENDDMSGFRILKGDLAFAHMVKEFSNNGIFLIDHKGERK 178 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + + S + L+S +T E+ +I IA+ Sbjct: 179 IRQIRSLGNSKVLLISNGGSLITETTEIKEINIIAK 214 >gi|291557731|emb|CBL34848.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 302 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 6/99 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ +T LA K G+ + +K + +P + + KI + +I L Sbjct: 9 LQKLRKQSGITQEQLADKLGVTAQAVSKWENGS------YPDGDLLPKIADIFDVSIDNL 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ + + S + Sbjct: 63 YGRGEEKCSFEQQVLNHMRAIADSSQDSCAEWLKSYLNI 101 >gi|190889915|ref|YP_001976457.1| transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] gi|190695194|gb|ACE89279.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] Length = 189 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I ++ LT LA +G+ ++ +R P+ + + Sbjct: 1 MEEQLEQAIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I AA ++ +++ + + + V Sbjct: 56 ICAALGLSLSAFFAEEGQQASPLARRQDQQVWRDPETGYLRRSVSAPGTASDVDIVEVEF 115 Query: 121 PEIRSPHNGIYA 132 P +A Sbjct: 116 PAGARVSFPPHA 127 >gi|317501992|ref|ZP_07960176.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896672|gb|EFV18759.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] Length = 102 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I+ + ++H L+ A + + + + +P E I K+ Sbjct: 2 NIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKS-----YPDLEMIIKVSDYFKI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +I +LL + + ++K+ + + + F + Sbjct: 57 SIDELLKNDVQTVKKIDNEKKDKKEVSYTIASFMFFRNCYYLGI 100 >gi|170288077|ref|YP_001738315.1| XRE family transcriptional regulator [Thermotoga sp. RQ2] gi|281411883|ref|YP_003345962.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|170175580|gb|ACB08632.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2] gi|281372986|gb|ADA66548.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 176 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 20/185 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + ++ LT LA + L + ++ + PS +++ +IL A Sbjct: 2 RIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKT-----SPSIDTLERILEALGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + +K+E+ S + P ++ Sbjct: 57 DLKHFFSDVEEERVVFKKEERVPVYDEPEGVKSEILMSGVEDKEIDPILVTLEPGAQTEE 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + Q D+ + + ++ GD K K + Sbjct: 117 ESYH--EGSEFGFVIQGRI--------DLYLDDKRYRLKEGDCFYYKADK-----KHYVK 161 Query: 188 RRGRS 192 G+ Sbjct: 162 NSGKK 166 >gi|75760672|ref|ZP_00740699.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491853|gb|EAO55042.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 9 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 64 >gi|332885359|gb|EGK05608.1| hypothetical protein HMPREF9456_02410 [Dysgonomonas mossii DSM 22836] Length = 231 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 62/236 (26%), Gaps = 26/236 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + K E + + + AG+ + + E + Sbjct: 1 MKNLTTK---ERLQFFVKEMGYGRNKFEEYAGIGSGYLS-----SKSTSITSDTIEKVIA 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG- 119 N + K L + + Sbjct: 53 KFPNLNVEWLLTGNGLMIIPENENKNITLRQLKSDYFNQDEKLIPLYELDASAGLTVLFD 112 Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL---ILNSAIQVNCGDRL 171 +P D + SM P+ + GDIL ++ + G+ Sbjct: 113 NQNKQIPIDIIKIPQA---PNCDGALYVRGDSMYPIIKAGDILCYKVITDFENIRYGNIY 169 Query: 172 LIKPRTGD---IVAKVLIS--RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI-LWA 221 L+ GD + K + + + L+S N + + ++I +A + +W Sbjct: 170 LLDINDGDDQYLTVKYVQKSDKGDNYLKLVSENGHHSPKDEKKNNIRSMAIVKMWV 225 >gi|327490803|gb|EGF22584.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 120 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + + LT +A K G+ ++ + + R P E++ K N + Sbjct: 4 ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESG-----KRKPGEETLKKFADFFNVS 56 >gi|281178569|dbj|BAI54899.1| conserved hypothetical protein [Escherichia coli SE15] Length = 178 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 42/160 (26%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G ++ + H Sbjct: 67 ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESMPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163 >gi|228907010|ref|ZP_04070876.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] gi|228852624|gb|EEM97412.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] Length = 107 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 >gi|134297168|ref|YP_001120903.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140325|gb|ABO56068.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 183 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + R+ + ++P L + P + Sbjct: 59 SLAEFFTFELVESRSVVSRRDQMPNLGNDALAFHLVGAGVKDRNMCIMREIYQP-LADTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + A + L + G+ +L+ GD + R + Sbjct: 118 AEMLAHAGHEGGVVVSGRLELTV--DGETWLLDP------GDGYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 + +++S N Sbjct: 166 PSAEQLCEVVSANS 179 >gi|326790576|ref|YP_004308397.1| hypothetical protein Clole_1473 [Clostridium lentocellum DSM 5427] gi|326541340|gb|ADZ83199.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 189 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + + + +A K G++ T+++ + R P+ ++I KI + Sbjct: 8 QIGTRIKEIRKSKGFSQAYMAEKIGVNRTTYSNYENNN-----REPNLKTIEKICEILDV 62 Query: 68 TICQ 71 TI Sbjct: 63 TISD 66 >gi|118476856|ref|YP_894007.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118416081|gb|ABK84500.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 114 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 9 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 64 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 + LL + + + + Sbjct: 65 VDTLLHDETTKEANLDSEWTQ 85 >gi|42780467|ref|NP_977714.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] gi|42736386|gb|AAS40322.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] Length = 107 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + + + ++ S F Sbjct: 58 VDTLLHDETTRENHLDSEWTQLVKDAMSSGVSKEQFRE 95 >gi|229819917|ref|YP_002881443.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565830|gb|ACQ79681.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 195 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + LT S LA + G+ ++ ++ + G R P+ E + + Sbjct: 14 VGPRLRALRHERGLTLSELAERTGISTSTLSRLESGG-----RKPTLELLLPLARVHGVP 68 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91 + L+ P + + Sbjct: 69 LDDLVGAPPTGDPRVHIRPVYRY 91 >gi|149190228|ref|ZP_01868503.1| hypothetical protein VSAK1_15062 [Vibrio shilonii AK1] gi|148835975|gb|EDL52937.1| hypothetical protein VSAK1_15062 [Vibrio shilonii AK1] Length = 214 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 58/226 (25%), Gaps = 41/226 (18%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKILAATNETI 69 E I + + N+T + LA G + + +G R PS E + I Sbjct: 7 ERISTLLKEKNITNNELAEAIGKGKATIGRYL---TKGPTRTYPSIEDLSLIADYFKVQA 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSPH 127 L E + + + ++ VP Sbjct: 64 HWLCFGVGDKHTDAEDITHAANQSAITVAVYNRTEVNALLSGDMPPSVGSIPVPPEYKEC 123 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-----IVA 182 G + + Y+ I ++N D +L + + Sbjct: 124 FG--------VMYPVTGSVS---YKWDCIALVNPNKPWVNDDIVLARLPGNPYPDFFTLV 172 Query: 183 K----VLISRRGRS----IDLMSLNCCYPVDTVEMSDIEWIARILW 220 K + + + I +S N DI+ + + W Sbjct: 173 KVGTIIHVWYGDDTTKNAIHQVSDN-----------DIDVLGVVRW 207 >gi|255283010|ref|ZP_05347565.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] gi|255266549|gb|EET59754.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] Length = 185 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 41/138 (29%), Gaps = 11/138 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + +I + I + R LT LA +A L ++ +R + PS ++ ++ Sbjct: 7 NAQIGKRIRDLRNRKGLTQQELADRAELTKGFISQLERGQV-----SPSVVTLLDLIECL 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPL------LYFPPSGSGGFFDSGVFPTGNKWNTVG 119 T + ++ + + + + + + ++ Sbjct: 62 GTTASDFFKEAVEEQIVFTEEGFFEKVDEGGNSIQWIVPTAQKYQMEPLLVVMQPHQSLD 121 Query: 120 VPEIRSPHNGIYAIQTQD 137 + Y I + Sbjct: 122 EDKPHDGEEFGYVISGKL 139 >gi|325291680|ref|YP_004277544.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059533|gb|ADY63224.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 197 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 5/124 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++ LT LA ++G+ ++ +R P+ + +I AA + Sbjct: 17 IGDRIKTLRAQNGLTLDRLAAESGVSRAMISRIERGEA-----SPTASLLARICAALGLS 71 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + KK + + V P Sbjct: 72 LSGFFAEDEEAVSPLVKKRDQQLWKDPETGYVRRAISPPRVGSDVDIVEVEFPAGARVGF 131 Query: 129 GIYA 132 +A Sbjct: 132 PPHA 135 >gi|330982590|gb|EGH80693.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 159 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 17/161 (10%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 ++ E ++ +A + G+ P + R P E I + L I Sbjct: 10 RQVMETQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTS 64 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--Y 131 G + + Y P S P S I Y Sbjct: 65 IPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDY 118 Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCG 168 + + + SM +G ++++++ I+ G Sbjct: 119 KAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAG 159 >gi|295399294|ref|ZP_06809276.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294978760|gb|EFG54356.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 113 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 5/79 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + E+ L+ +A K G+ + + + R P E++ K+ Sbjct: 2 DLGERLKLCREKKGLSQKEVAEKIGIKNNTLSNYESGE-----RRPDYETLCKLADLYEV 56 Query: 68 TICQLLDLPFSDGRTTEKK 86 ++ L+ K Sbjct: 57 SLDYLIKGQEHKEEKENKN 75 >gi|218704902|ref|YP_002412421.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|293404913|ref|ZP_06648905.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412] gi|298380556|ref|ZP_06990155.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302] gi|300900069|ref|ZP_07118264.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|331646712|ref|ZP_08347815.1| putative oxidoreductase/putative repressor [Escherichia coli M605] gi|218431999|emb|CAR12884.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|291427121|gb|EFF00148.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412] gi|298277998|gb|EFI19512.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302] gi|300356415|gb|EFJ72285.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|323187286|gb|EFZ72597.1| helix-turn-helix family protein [Escherichia coli RN587/1] gi|330911245|gb|EGH39755.1| transcriptional regulator yidN, Cro/CI family [Escherichia coli AA86] gi|331045464|gb|EGI17591.1| putative oxidoreductase/putative repressor [Escherichia coli M605] Length = 178 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163 >gi|319935773|ref|ZP_08010202.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319809208|gb|EFW05657.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 255 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 7/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + ++ + + LA++ G+ + +K +R P T+++ ++ Sbjct: 4 EIANKLLQLRKEKGYSQEALAQELGISRQAVSKWERAEA-----SPDTDNLIELAKLYGI 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRS 125 ++ QLL ++ T + E G V E+ Sbjct: 59 SLDQLLLHEPTETEETISDKTEDMKESQEEYAYKYEDGDEYVHVGFDGIHVKDDESEVHV 118 Query: 126 PHNGIYAIQTQDTRHKT 142 GI+ I Sbjct: 119 SWKGIHVIDRNGDGVNI 135 >gi|299534571|ref|ZP_07047903.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] gi|298729944|gb|EFI70487.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] Length = 180 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 8/138 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + LT L + L ++ +R PS E++F IL Sbjct: 2 QIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLN-----SPSIETLFSILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 D + + +E + Y + + + Sbjct: 57 RPKDFFDDESPEQKVVYTEEDQST--YTDEEKKYEIQWLIPTSNEKEMEPIFLTFAADGE 114 Query: 128 NGIYAIQ-TQDTRHKTQD 144 + ++ + + Sbjct: 115 FKQFEPSLSETFIYVVKG 132 >gi|300856997|ref|YP_003781981.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437112|gb|ADK16879.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 120 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ + + LA K G+ + +K + P +I K+ N + Sbjct: 3 ISERLQKLRKHEGYSQEQLAEKLGVTRQAISKWESNQGN-----PDINNIIKLSEIYNVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91 LL + E KE Sbjct: 58 TDYLLKGEEQISKPIEINSKENK 80 >gi|309701401|emb|CBJ00704.1| putative prophage repressor [Escherichia coli ETEC H10407] Length = 174 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 46/170 (27%), Gaps = 19/170 (11%) Query: 45 GIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 G S+ KIL N + + K +PLL + S Sbjct: 2 NGGGAPSSRYISSLAKILKVNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS- 60 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILI 158 + + I S + I + SM G + Sbjct: 61 ------------DYMKNSSITSCVQLVGEIPVNTFAVVLESDSMSTSGGGVSIPNGSTVF 108 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ V G+ +L P+ + G I L+ N YP ++ Sbjct: 109 VDPDRTVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPTNPRYPSIMLD 158 >gi|289642165|ref|ZP_06474316.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289508011|gb|EFD28959.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 286 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + I + +++ LAR+AG+ ++ +R R PS E + + Sbjct: 1 MPPLNVRDLGDFIRDQRKAAHISVRQLARQAGVSNPYLSQIERG-----LRKPSAEILQQ 55 Query: 61 ILAATNET 68 I A + Sbjct: 56 IAKALRIS 63 >gi|255658319|ref|ZP_05403728.1| repressor LexA [Mitsuokella multacida DSM 20544] gi|260849638|gb|EEX69645.1| repressor LexA [Mitsuokella multacida DSM 20544] Length = 205 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 37/220 (16%) Query: 6 HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSK-RFGIEGR-NRWPSTESIFK 60 K+I++ I PS + GL ++ + R G R P+ Sbjct: 11 QKEIFQFIKAFLLEKGYPPSVREIGEAVGLKSSSTVHGYLSRLEANGMIKRDPTKPRAID 70 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL + + + +F N + Sbjct: 71 ILDERPWRQNVPVPMLMGIHKGA-----------------------ALFSERNIRDVYSF 107 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P+ + + D + +GD+L + N D ++ + T Sbjct: 108 PQDMLGTH------KKTYLLHMPDDGLQQAGIAEGDVLFITPQEFANDFDLVVAE--TEG 159 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L S + + +AR++ Sbjct: 160 RTLVRYFRQDEDGTYLQSTAETADSTEPCKNAVTIVARVI 199 >gi|300694645|ref|YP_003750618.1| transcriptional regulator, xre family [Ralstonia solanacearum PSI07] gi|299076682|emb|CBJ36021.1| putative transcriptional regulator, XRE family [Ralstonia solanacearum PSI07] Length = 216 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 24/187 (12%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +HK++ I + LT S L+ ++G+ ++ +K++R I + E + Sbjct: 21 LNHKEVGARIREARKALGLTLSALSERSGVALSTISKAERGDI-----ALTYEKFAGLAH 75 Query: 64 ATNETICQLLDLPFSDGRTTEKK---EKEIPLLYFPPSGSGGFFDSG-----VFPTGNKW 115 A QLL + ++Y P+ G + P Sbjct: 76 ALGLEFEQLLGRRRDPASGPLRPSFTPSGGQVIYDTPNYEYGMLADELTGKRMVPMRAHI 135 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + ++ ++ + GD+ L+ GD L Sbjct: 136 ----RARSLADFPDYIRHPGEEFVF-VLGGTLELRFENGDVFRLSP------GDSLYFDS 184 Query: 176 RTGDIVA 182 G + Sbjct: 185 AVGHVYL 191 >gi|224824162|ref|ZP_03697270.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603581|gb|EEG09756.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 180 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 2 DIGARLRMVRARFGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVSSLKKVLEGLPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T+ E+P L Sbjct: 57 TLSDFFTFDAEPEHKVFYNADELPNL 82 >gi|153813857|ref|ZP_01966525.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|331088191|ref|ZP_08337110.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848253|gb|EDK25171.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|330408435|gb|EGG87901.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] Length = 215 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 61/187 (32%), Gaps = 11/187 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I+ + ++H L+ A + + + + +P E I K+ Sbjct: 2 NIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKS-----YPDLEMIIKVSDYFKI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSP 126 +I +LL + + ++K ++ +K+ +++ V Sbjct: 57 SIDELLKNDVQTVKKIDNEKKAKKKYLILLLVLCFLGTVIIWGLYSKYQDSIEVDFTMEK 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 H + +T++ + K + L + V+ G + + K+ Sbjct: 117 HETYKSNETKEPSMNIANGYF--SVPKDEKLDIQVKGTVDNGKLHITIADKDN---KIYY 171 Query: 187 SRRGRSI 193 G+ + Sbjct: 172 QLDGQEL 178 >gi|262174076|ref|ZP_06041752.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451] gi|261890256|gb|EEY36244.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451] Length = 226 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 34/228 (14%) Query: 9 IWEAIDRMAERHN------LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + ++ T + + G+ ++++ + R PS + I ++ Sbjct: 8 VASRLRELRKQKEIDDGRPWTADQVGKAIGIGQSTYSNYEN-----EIRKPSLDRIEELA 62 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A T L G P+L P G+ ++ + E Sbjct: 63 AFYKVTPSYLAAFTDHKGSGGGDALHVTPMLTDSAKDVSV------NPAGDYSISIELLE 116 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD---RLLIKPRTGD 179 + I D +M P KGDI+I+ ++ + Sbjct: 117 MHGLRKESILIDA------IPDNAMAPHLIKGDIVIVKREPSLSIETLPLGIYCIKEQNG 170 Query: 180 IV-AKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIE---WIA---RIL 219 + + + + N Y T D + + R++ Sbjct: 171 RTWMRWVKREINGMVKVYPENSTHYESHTFSEEDFKQFTILGTIFRVI 218 >gi|229160333|ref|ZP_04288331.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] gi|228623057|gb|EEK79885.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] Length = 107 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 + LL + + + + Sbjct: 58 VDTLLHDETTKEANLDSEWTQ 78 >gi|229114819|ref|ZP_04244233.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] gi|228668884|gb|EEL24312.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] Length = 107 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 + LL + + + Sbjct: 58 VDTLLHDETEKEAHLDSEWTQ 78 >gi|167461386|ref|ZP_02326475.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 183 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 26/178 (14%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAA 64 + + ++++ + A+K+ L T + + PS +S+ K+ A Sbjct: 2 NNLGKYLEQVRREKKFSLREAAQKSDLSYTYIRDIELGMNRKTKKKVKPSPDSLKKLAEA 61 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIP---------------LLYFPPSGSGGFFDSGVF 109 +LL TE E + P G+ Sbjct: 62 YGIEYYELLQKAGILDEGTESALDEANSKLDKLIEETVNNSTHISTIPLIRTICAGDGII 121 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 T N + V P + D + Q SM + GDI+ L +A V Sbjct: 122 ATENIEDYVAYP--------LLKGNKPDYALRVQGDSMKDVGIDDGDIVFLKAANWVE 171 >gi|104781203|ref|YP_607701.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95110190|emb|CAK14897.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 181 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 54/193 (27%), Gaps = 23/193 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ER+NL+ LAR++GL ++ ++ ++ + PS S+ K+L ++ Sbjct: 4 GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRV-----SPSVSSLKKLLEGIPMSL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + G + G Sbjct: 59 AEFFSFDEPVREERF-------VFRGGEQPDLGRNGLRMLLVGASVEG----RQMRMLRE 107 Query: 130 IYAIQTQDTRHKTQDTSMLPLY--RKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLI 186 +YA R L ++ + V GD I Sbjct: 108 LYAPGADSGEPIVHSEGEECGLVTRGTMELWVDGQVSVLNAGDGYYIPTTLPHS----FK 163 Query: 187 SRRGRSIDLMSLN 199 + +++S N Sbjct: 164 NIGPDEAEIISAN 176 >gi|238898657|ref|YP_002924338.1| phage repressor protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466416|gb|ACQ68190.1| phage repressor protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 202 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 53/174 (30%), Gaps = 22/174 (12%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + K + E + ++ LT + LA AG+ S K I K+L Sbjct: 1 MNEKTLAERLRMAMKKTGLTQAKLADAAGMTQPSIWKLLNGKA---LSSTKLIEIAKVLR 57 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 E + + L + + +K ++ G V VP++ Sbjct: 58 VRPEWLSEGKGLIRENEKENLEKNISYDDIFSVAVYG---------KNGPTGEKVLVPDL 108 Query: 124 R-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 S + Y + + P G ++++++ GD + Sbjct: 109 VKSKYCRAYRLDIN------SGCADAPA---GTLIVVDTEEIPGTGDLVYACIN 153 >gi|297203046|ref|ZP_06920443.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] gi|197712042|gb|EDY56076.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] Length = 509 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I + T S LA G ++ N+ +R S E I +I A Sbjct: 8 RIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|126649830|ref|ZP_01722066.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] gi|126593549|gb|EAZ87494.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] Length = 180 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 8/138 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + LT L + L ++ +R PS E++F IL Sbjct: 2 QIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLN-----SPSIETLFSILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T + D + + + E ++ + + + + Sbjct: 57 TPKEFFDDGTPEQKVVYTE--EDQSIFTDEEKKYEIQWLIPTSNEKEMEPIFLTFEANGE 114 Query: 128 NGIYAIQ-TQDTRHKTQD 144 + ++ + + Sbjct: 115 FKQFEPSLSETFIYVVKG 132 >gi|304395793|ref|ZP_07377676.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357087|gb|EFM21451.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 187 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 45/171 (26%), Gaps = 11/171 (6%) Query: 1 MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST---- 55 M+ + +++ + + + + LA G+ + ++ +R + Sbjct: 1 MSELNTEQRLAVRLSELRLQRGWSLDELAVATGISRATLSRIERGETSPTAALLNRLCVA 60 Query: 56 --ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 ++ ++L+ E L+ E + P G G Sbjct: 61 YGLTMSRLLSEVEEESSLLVTSQHQPVWQDEASGFIRRNISPPALHFRCELVEGRLRPGA 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 + + P + S + GD L + + Sbjct: 121 RIDYDAPPIQGLEQHIWLREGG----LTVTMGSQAWTLQPGDCLRFHLTGK 167 >gi|302555556|ref|ZP_07307898.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302473174|gb|EFL36267.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 191 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 48/170 (28%), Gaps = 20/170 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + H + LA ++G+ ++ ++++R P+ + ++ A Sbjct: 13 RLGARLAELRAEHGWSLGELAERSGVSRSTLSRAERAET-----SPTAALLNRLCAVYGR 67 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKWN 116 T+ QLL ++ + + P G G G Sbjct: 68 TMSQLLSEVEAEPAPVMRAPDQPVWQDRTSGFVRRSVSPPHPALRGELVEGRLTAGADIA 127 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 P + I+ ++ GD L + Sbjct: 128 Y-DRPPVAGLEQHIWILEG---ALLVTAQDTEHRLGTGDCLRMRVWGPTR 173 >gi|251772558|gb|EES53124.1| transcriptional regulator, XRE family [Leptospirillum ferrodiazotrophum] Length = 181 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 13/166 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ E + + + NL+ LA+KAG+ +S ++ + + PS ++ K+ AA Sbjct: 2 KQVSERLRELRKNQNLSLRTLAKKAGISASSLSQIESGQV-----SPSIATLEKVCAALE 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRS 125 I L D + + +Y S + + F + + Sbjct: 57 LPITTLFDETPGESDPLVMPARNRRRVYSTTSHATVEPLARGFAAKKMQPLLITLDPGGE 116 Query: 126 PHNGIYA-IQTQDTRHKTQDTSMLPL------YRKGDILILNSAIQ 164 YA I+ ++ T++ D + + Sbjct: 117 VGEQPYAGIKGEEFAVVLSGTTLFEQAGKVYDLGPLDAVYFDPHQP 162 >gi|126459405|ref|YP_001055683.1| XRE family transcriptional regulator [Pyrobaculum calidifontis JCM 11548] gi|126249126|gb|ABO08217.1| transcriptional regulator, XRE family [Pyrobaculum calidifontis JCM 11548] Length = 528 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 62/221 (28%), Gaps = 25/221 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + L+ S LA +AG+ ++ + + + PS +++KI A Sbjct: 9 VGERIAALRRERGLSLSELAERAGVSKSTLYEIEMGRV-----APSVTTLWKIANALEVG 63 Query: 69 I---CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L E+ + G V V + + Sbjct: 64 FGALVPEWVLVSERSVDVLLIERGDGFEAYLMRLKPYAVHVSRPHVGVVSEYVFVAKGAA 123 Query: 126 PHN----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 I+ + + T + LI+ + + + ++ Sbjct: 124 VVGPVDSPIFLREGEATEFPGNVPHFYAPFGGETRLIVR---------LVYAQKESAELP 174 Query: 182 A-KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 ++ R + L S V + +I R WA Sbjct: 175 LGVRVVKRPPGPLGLWS---SGDVREFGTTRGRYIYRSFWA 212 >gi|229189462|ref|ZP_04316479.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] gi|228594053|gb|EEK51855.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] Length = 107 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 >gi|209515043|ref|ZP_03263912.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209504669|gb|EEA04656.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 183 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 62/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + ++H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + R+ + ++P L S V P + Sbjct: 59 SLAEFFTFELEAQRSVVSRRADMPNLGNESIELYLAGSSVKDRNMGILREVYQP-LSDTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + L + G +L+ GD + R + Sbjct: 118 LEMLKHEGHEGGVVVSGQIELTV--DGVTWLLDP------GDSYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 + +++S N Sbjct: 166 PSVEHLCEIVSANS 179 >gi|167749663|ref|ZP_02421790.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] gi|167657416|gb|EDS01546.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] Length = 302 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 6/99 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ +T LA K G+ + +K + +P + + KI + +I L Sbjct: 9 LQMLRKQSGITQEQLAAKLGVTAQAVSKWENGS------YPDGDLLPKIADIFDVSIDNL 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ + + S + Sbjct: 63 YGRGEERCSFEQQVVNHMQAIADSSQDSCAEWLENYLNI 101 >gi|158522276|ref|YP_001530146.1| XRE family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511102|gb|ABW68069.1| transcriptional regulator, XRE family [Desulfococcus oleovorans Hxd3] Length = 433 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 49/169 (28%), Gaps = 17/169 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + + ++ LAR G+ P++ ++ + I +PS ++ K+ + Sbjct: 252 DLGLRIKELRTKKGMSQVALARGIGVTPSTISQVENNQI-----FPSVPALIKMSEILSV 306 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS----GSGGFFDSGVFPTGNKWNTVGVPEI 123 + E E P S + + Sbjct: 307 DVGYFFQTGAGSAPRVVFSEFEAMPSPVPGMARRLISCRRLMPEDMEAQCVPYIIEIQPG 366 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 ++++ ++T + + + + A + GD + Sbjct: 367 AVLDGHFFSLKGEETGFLMEGEL--------HMTLGHGAQPLQTGDLVY 407 >gi|196035367|ref|ZP_03102772.1| transcriptional regulator SinR [Bacillus cereus W] gi|195992044|gb|EDX56007.1| transcriptional regulator SinR [Bacillus cereus W] Length = 107 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 + LL + + + + Sbjct: 58 VDTLLHDETTKEANLDSEWTQ 78 >gi|47566166|ref|ZP_00237194.1| SinR protein [Bacillus cereus G9241] gi|228984453|ref|ZP_04144631.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154947|ref|ZP_04283061.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|229195577|ref|ZP_04322343.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|47556719|gb|EAL15050.1| SinR protein [Bacillus cereus G9241] gi|228587826|gb|EEK45878.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|228628505|gb|EEK85218.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|228775319|gb|EEM23707.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 107 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 + LL + + + + Sbjct: 58 VDTLLHDETTKENHLDSEWTQ 78 >gi|330465134|ref|YP_004402877.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328808105|gb|AEB42277.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 195 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 5/106 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + E ++ S LAR+AG+ + + + R P+ E+++ I A Sbjct: 28 IGRRVRALREARGISLSALARQAGVGKATLSGLENGT-----RNPTLETLYAITAQLGVP 82 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + +L P S L F S G Sbjct: 83 LTAVLSAPASGATVRGAAVSATLLEVFEDSDVTYELYRMQVAPGPG 128 >gi|294497044|ref|YP_003560744.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294346981|gb|ADE67310.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 180 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 23/175 (13%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + + LT L + L ++ +R PS E+ F IL Sbjct: 2 EIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLS-----SPSLETFFSILEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + ++ + ++E + + + + Sbjct: 57 EPKEFFEIDTHVQKVVYREEDYTSYCEDEKG-----YHIQWLVHESNEKEMEPIRLILHE 111 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 G + P + IL ++V G R+ + I Sbjct: 112 KGAFKR-------------FEPSLSETFGYILRGCVKVKLGGRIYEAKQGETIYF 153 >gi|257063253|ref|YP_003142925.1| hypothetical protein Shel_05170 [Slackia heliotrinireducens DSM 20476] gi|256790906|gb|ACV21576.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM 20476] Length = 436 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 5/110 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + ++ LT + LA+ G+ + +K + + PS ES+ K+ + ++ Sbjct: 7 GNYIFHLRKQAGLTQAELAKLVGVTNKAVSKWEVGKSK-----PSVESVRKLSGLFHVSV 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +LL + R K S + + + G V Sbjct: 62 DELLRQRDAGRRAEITKVVITGGPCAGKSTAMSWVQNAFTQMGYVVLFVP 111 >gi|237733314|ref|ZP_04563795.1| predicted protein [Mollicutes bacterium D7] gi|229383695|gb|EEO33786.1| predicted protein [Coprobacillus sp. D7] Length = 297 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 36/113 (31%), Gaps = 5/113 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ + LA + + + +K + +P ES+ + TI Sbjct: 11 DNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNG-----YPEMESLIILSDLFECTID 65 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 LL + T K+ + + + G + + + E Sbjct: 66 DLLKNDLTQHNPTAKQAYDKHYSLIAKAYTFGVVSILLGVCAYLFAEIYFSEN 118 >gi|228957650|ref|ZP_04119398.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802035|gb|EEM48904.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 107 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 >gi|225872075|ref|YP_002753530.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793611|gb|ACO33701.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 363 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 23/214 (10%), Positives = 51/214 (23%), Gaps = 26/214 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN----RWPSTESIFKIL 62 ++ + I + ER ++ A G+D S ++ +R I R K L Sbjct: 107 DQVAKNIKALRERLEMSQQRFALALGVDQGSVSRWERGKIRPTPETFARMAKLSDDEKKL 166 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 E + + G+F + + + Sbjct: 167 YFLEEAGVPASYFLGEKMLPEMLFAASEAVAKSLEDSNQVTATKGIFTPQESLSIIPYVQ 226 Query: 123 IRSPHNGIYAIQTQDTRHKTQ------------DTSMLPLYRKGDILIL------NSAIQ 164 A+ T + + P ++ Sbjct: 227 DPLKVGTKEAMSTSSSILQFPSSWLPLEGTLQATRFPNPGIPYMSTEVIGIVDVSRRDPD 286 Query: 165 VNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMS 197 G + + G + + + R G + L+ Sbjct: 287 RLVGCIVAVIGYEGLEAMV---LRRDGTTYLLLP 317 >gi|167755998|ref|ZP_02428125.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] gi|167703990|gb|EDS18569.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] Length = 291 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 36/113 (31%), Gaps = 5/113 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ + LA + + + +K + +P ES+ + TI Sbjct: 5 DNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNG-----YPEMESLIILSDLFECTID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 LL + T K+ + + + G + + + E Sbjct: 60 DLLKNDLTQHNPTAKQAYDKHYSLIAKAYTFGVVSILLGVCAYLFAEIYFSEN 112 >gi|33594274|ref|NP_881918.1| putative phage repressor protein [Bordetella pertussis Tohama I] gi|33564349|emb|CAE43653.1| putative phage repressor protein [Bordetella pertussis Tohama I] gi|332383687|gb|AEE68534.1| putative phage repressor protein [Bordetella pertussis CS] Length = 203 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + SM P+ R + ++++ ++ + R G ++ K L + Sbjct: 93 KRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDG 152 Query: 192 SIDLMSLN--CCYPVDTVEMSD---IEWIARILWA 221 +S N + + D + I +LW+ Sbjct: 153 RWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWS 187 >gi|256396383|ref|YP_003117947.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362609|gb|ACU76106.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 189 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 18/174 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I R+ ++ S LAR A + + + + +G P+ E+++ I Sbjct: 12 QIGARIRRLRLERGVSLSALARDAAVGKATLSGLE----DGSRGNPTIETLYAIAGRLGV 67 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL-----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 I LL P G + + F + + G++ + P Sbjct: 68 PIGALLPDPPHPGEKPLETIHGTAVSASLLETFSDADADTELFRLHIRPGHEQLSPAHPP 127 Query: 123 IRSPHNGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + ++ + D P + D + Sbjct: 128 GTVEYLTVFTGTARVGRPDALLTVP-----PGAHVSWTADVPHTYTAISDDDVY 176 >gi|322378177|ref|ZP_08052662.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280907|gb|EFX57922.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 151 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + +H + LA + G+ S++ + + P+ E + KI ++ Sbjct: 92 RLKELRLQHGFSQEELAEQIGIKQNSYSDWEHGKSK-----PNYEKLEKIADFFGVSLDW 146 >gi|239906995|ref|YP_002953736.1| hypothetical protein DMR_23590 [Desulfovibrio magneticus RS-1] gi|239796861|dbj|BAH75850.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 145 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRR-GR 191 + + +D+ M P+ R+ + L+ G+ + +V K + G+ Sbjct: 50 RPHLLVVRMEDSGMEPVIRRKAYVGLDCDDVTARSGEIYALSIPGEGLVIKQVERDSAGQ 109 Query: 192 SIDLMSLNCCYPVDTVEM--SDIEWIARILWASQ 223 + L+S + + ++ + R++W Q Sbjct: 110 RLRLVSASPRHAARSLAQGGHAYVVVGRVIWVIQ 143 >gi|237708561|ref|ZP_04539042.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457490|gb|EEO63211.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 226 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 71/225 (31%), Gaps = 24/225 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ + + + AGL K+K G + S+ +I KIL A E Sbjct: 5 ERLQYFMEKKGINDNQMTVNAGLSVGLIGKAKVSG-----KGMSSMNIEKILLAYPELSA 59 Query: 71 QL-------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + +G T + L + S G V G ++ V ++ Sbjct: 60 DWLLTGAGSMLKDDLNGIKTIDEANSSTLPTTSMNPSIGTPYYDVDFIG-GFDEVFNSQV 118 Query: 124 RSPHNGIYAI--QTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGD 179 P I + SM P GDI+ L+ + G+ + T Sbjct: 119 NIPATNIVIRGFEKASLWCNVTGHSMEPKINHGDIIALHQCTLNDIQYGEIYAVVLDTI- 177 Query: 180 IVAKVLISRRG-RSIDLMSLN-CCYPVDTVEMSDI----EWIARI 218 K+L + + +N Y + S I E I I Sbjct: 178 RTIKILRRSPDPDKLRFIPINTNDYDEQEFDKSRIINVFEVIGSI 222 >gi|228990384|ref|ZP_04150349.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] gi|228996484|ref|ZP_04156123.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|229004136|ref|ZP_04161937.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228756997|gb|EEM06241.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228763116|gb|EEM12024.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|228768910|gb|EEM17508.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] Length = 107 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIANVLQIP 57 >gi|296102221|ref|YP_003612367.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056680|gb|ADF61418.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 191 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 12/156 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T +++I I E + S LA +AG+ +K +R P+ + ++ Sbjct: 5 TDTMNQRISARIRLERESRGWSLSELADRAGVSRAMIHKIERGDS-----SPTATLLARL 59 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 A ++ L+ + P+ P + S V +P Sbjct: 60 SGAFGISMSTLIARAEMQEGKLLR-LANQPVWRDPQTHYLRRHVSPRTDLPIDLVQVELP 118 Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLPLYRKGD 155 YA+ Q + S ++++GD Sbjct: 119 AGSDVPMPASSYALARQLIWLQ----SGELVFQEGD 150 >gi|251778801|ref|ZP_04821721.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083116|gb|EES49006.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 179 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 14/140 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + LT LA + L ++ + PS ++ IL Sbjct: 2 QIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLMDILEILGT 56 Query: 68 TICQLLD--------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + +D T+ +E + L++ P+ + + + Sbjct: 57 NLNEFFSETKEEQVIFSNNDMFKTDDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIE 116 Query: 120 VPEIRSPHNGIYAIQTQDTR 139 E Y + Sbjct: 117 -EEPHDGEEFGYVLSGSIYL 135 >gi|238020740|ref|ZP_04601166.1| hypothetical protein GCWU000324_00630 [Kingella oralis ATCC 51147] gi|237867720|gb|EEP68726.1| hypothetical protein GCWU000324_00630 [Kingella oralis ATCC 51147] Length = 139 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 10/105 (9%) Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDI--V 181 + A +M P L+++ S ++ G+ +++ + + Sbjct: 37 LFNELGIADAQTCGIVIGYGEAMKPTISGKCELLVDLSDNKLAEGNIYVLEIGSRALIRR 96 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWASQ 223 K+L+ + I L N YP VE D ++ I R+ + Q Sbjct: 97 VKLLLRQ----IILACDNPNYPDMVVEGEDLSRLKVIGRVRYIGQ 137 >gi|119962787|ref|YP_946870.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119949646|gb|ABM08557.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 175 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/132 (9%), Positives = 36/132 (27%), Gaps = 8/132 (6%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 M + +T + L+ GL ++ +R PS ++ ++ + + + Sbjct: 1 MRKAKGMTLAQLSDVTGLSQAIVSQIERGMAN-----PSFTTLAQLAHGLDIPVGRFFIG 55 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPHNGIYA 132 ++ L G + P + + P + + Sbjct: 56 QDESKSPVVRRSDRRNLKNVTRESVGEAVHELLTPNRDGSIEAQWISTPPGHDTSDTPFT 115 Query: 133 IQTQDTRHKTQD 144 ++ + Sbjct: 116 HSGEEFCYIISG 127 >gi|325132066|gb|EGC54762.1| hypothetical protein NMBM6190_1101 [Neisseria meningitidis M6190] gi|325137999|gb|EGC60572.1| hypothetical protein NMBES14902_1186 [Neisseria meningitidis ES14902] gi|325142329|gb|EGC64741.1| hypothetical protein NMB9615945_1082 [Neisseria meningitidis 961-5945] gi|325198286|gb|ADY93742.1| conserved domain protein [Neisseria meningitidis G2136] Length = 71 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 5/52 (9%) Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILWA 221 D+ K + + + S N Y +++ DI I R+ W Sbjct: 1 MRIGNDLFVKRVQRIP-GKLLVTSENPRYAPFEIDLSNTQDDIAIIGRVEWY 51 >gi|325288923|ref|YP_004265104.1| phage repressor like transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324964324|gb|ADY55103.1| phage repressor like transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 259 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 4/100 (4%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 G E P I+ + + SM+ R GD++I++ V Sbjct: 128 VAAGMPIMADEFLEGFLPVPTK-KIKKNTYIVRAKGESMIDAGIRDGDLIIISPQPTVEQ 186 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 G+ + GD+ K + L N + Sbjct: 187 GES-ALIKVDGDVTIKKFYRY-DHEVRLKPANDKMKDIVI 224 >gi|92112522|ref|YP_572450.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795612|gb|ABE57751.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 178 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + I + R+ E + S LA +A + ++ ++ + P+ E+++ Sbjct: 1 MPSPT-PVIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGN-----PTIETLWT 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T +LL E ++ ++ +G ++ G Sbjct: 55 LANTLGVTFSELLAEKTGGVTVGEPGGGQVQVVARGRQSPRVEVYLMQLASGEIKHSRGH 114 Query: 121 PEIRSPH 127 P Sbjct: 115 PRGVRER 121 >gi|54022912|ref|YP_117154.1| hypothetical protein nfa9450 [Nocardia farcinica IFM 10152] gi|54014420|dbj|BAD55790.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 394 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 5/113 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT ++ + I + RH LT + LA G+D ++ K + G R S + Sbjct: 24 MTELPAGELGDRIAQARSRHGLTQAQLAAAIGIDRSALAKIE-----GGTRRVSALELAG 78 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 I E I + + ++ + F T + Sbjct: 79 IAEELGERIEWFVLPSPPAIVSHRNLQEPGTPSPEIDKLLERLAWNVEFMTEH 131 >gi|26247719|ref|NP_753759.1| hypothetical protein c1858 [Escherichia coli CFT073] gi|110641615|ref|YP_669345.1| hypothetical protein ECP_1437 [Escherichia coli 536] gi|191172851|ref|ZP_03034387.1| DNA-binding protein [Escherichia coli F11] gi|227886179|ref|ZP_04003984.1| possible transcriptional regulator [Escherichia coli 83972] gi|300975406|ref|ZP_07172980.1| helix-turn-helix protein [Escherichia coli MS 200-1] gi|300976462|ref|ZP_07173445.1| helix-turn-helix protein [Escherichia coli MS 45-1] gi|301046759|ref|ZP_07193881.1| helix-turn-helix protein [Escherichia coli MS 185-1] gi|331657437|ref|ZP_08358399.1| putative oxidoreductase/putative repressor [Escherichia coli TA206] gi|26108121|gb|AAN80321.1|AE016760_180 Hypothetical protein ydcN [Escherichia coli CFT073] gi|47600733|emb|CAE55854.1| hypothetical protein YdcN [Escherichia coli Nissle 1917] gi|110343207|gb|ABG69444.1| hypothetical protein YdcN (putative DNA-binding protein) [Escherichia coli 536] gi|190906857|gb|EDV66460.1| DNA-binding protein [Escherichia coli F11] gi|227836844|gb|EEJ47310.1| possible transcriptional regulator [Escherichia coli 83972] gi|300301320|gb|EFJ57705.1| helix-turn-helix protein [Escherichia coli MS 185-1] gi|300308732|gb|EFJ63252.1| helix-turn-helix protein [Escherichia coli MS 200-1] gi|300410034|gb|EFJ93572.1| helix-turn-helix protein [Escherichia coli MS 45-1] gi|307553442|gb|ADN46217.1| putative HTH-type transcriptional regulator YdcN [Escherichia coli ABU 83972] gi|315290641|gb|EFU50013.1| helix-turn-helix protein [Escherichia coli MS 153-1] gi|320195607|gb|EFW70232.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli WV_060327] gi|324015156|gb|EGB84375.1| helix-turn-helix protein [Escherichia coli MS 60-1] gi|331055685|gb|EGI27694.1| putative oxidoreductase/putative repressor [Escherichia coli TA206] Length = 178 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSSTPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163 >gi|28377509|ref|NP_784401.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1] gi|308181218|ref|YP_003925346.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270341|emb|CAD63242.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1] gi|308046709|gb|ADN99252.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + ++ L+ S LA K+G+ T+ + + + E+ K+ A + + Sbjct: 6 RIRELRQKLGLSQSALADKSGVPQTTISAIESGTN------LTYETAKKLARALGVSTDE 59 >gi|118578963|ref|YP_900213.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501673|gb|ABK98155.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 187 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 59/196 (30%), Gaps = 17/196 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S I I ++ + LT +A++ G P ++ + + S I K Sbjct: 1 MSGLNIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLS--KIAKFFD 58 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV--- 120 D + K + ++ P S G+ + Sbjct: 59 VKIGYFFIEDDDECGFEIVHANQRKSVSKVFAPIGTSHGYSYQSLSFRKQNKKMEPFFLT 118 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 ++ Y+ + T+ L ++ + +I ++ GD + Sbjct: 119 VTEKANEESAYSHDGEKFLFVTKGDVEL--------ILDDKSISLSEGDSIYFDSSIKH- 169 Query: 181 VAKVLISRRGRSIDLM 196 L SR G+ ++L+ Sbjct: 170 ---RLRSRDGKEVNLL 182 >gi|320120590|gb|EFE29126.2| GTP pyrophosphokinase [Filifactor alocis ATCC 35896] Length = 271 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 38/104 (36%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I R+ E T LA K + + + +R + P +++ K+ + Sbjct: 2 NIGMNIRRLREERGFTQEKLAEKLNVSFQAVSAWEREEYK-----PDLDNLIKLTEILDV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ +++ + +T++ + + + + F + Sbjct: 57 SLSAIVEQQETRFQTSDVIYNWEHMKTYVKTVAKNFEMTDTLKA 100 >gi|326792010|ref|YP_004309831.1| cupin [Clostridium lentocellum DSM 5427] gi|326542774|gb|ADZ84633.1| Cupin 2 conserved barrel domain protein [Clostridium lentocellum DSM 5427] Length = 179 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 16/141 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I+++ +++ LT LA + L ++ +R PS ++ IL Sbjct: 2 DIGAKINQLRKKNGLTQEELADRCELSKGFISQVERGLT-----SPSIATLIDILECLGT 56 Query: 68 TICQLLDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + +K + P + + ++V Sbjct: 57 NLKDFFNESSQEKIVFTKEDVFEKEDKDHNNMITWLIPNAQKNDMEPILIHIEPGGKSSV 116 Query: 119 GVPEIRSPHNGIYAIQTQDTR 139 G P Y I Sbjct: 117 GAP--HDGEEFGYVIAGNVYV 135 >gi|257869747|ref|ZP_05649400.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803911|gb|EEV32733.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 211 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA K G++ S +K +R +P+ +++ KI+ T Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65 Query: 69 ICQLLDLPFSDGRTTEKKE 87 +LL + EK+ Sbjct: 66 PNELLSGEWKYVNQAEKEV 84 >gi|33601182|ref|NP_888742.1| putative phage repressor protein [Bordetella bronchiseptica RB50] gi|33575617|emb|CAE32695.1| putative phage repressor protein [Bordetella bronchiseptica RB50] Length = 209 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 + SM P+ R + ++++ ++ + R G ++ K L + Sbjct: 93 KRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDG 152 Query: 192 SIDLMSLN--CCYPVDTVEMSD---IEWIARILWA 221 +S N + + D + I +LW+ Sbjct: 153 RWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWS 187 >gi|114564176|ref|YP_751690.1| XRE family transcriptional regulator [Shewanella frigidimarina NCIMB 400] gi|114335469|gb|ABI72851.1| transcriptional regulator, XRE family with cupin sensor [Shewanella frigidimarina NCIMB 400] Length = 182 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ++ + + L+ LA++AG+ ++ + ++ + PS S+ K+LA Sbjct: 2 DIGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLAGIPM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 ++ + + + LL Sbjct: 57 SLVDFFSIDDGSIGDQKVVYRGNELLDI 84 >gi|225572879|ref|ZP_03781634.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|317500124|ref|ZP_07958358.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087647|ref|ZP_08336575.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] gi|225039744|gb|EEG49990.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|316898479|gb|EFV20516.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|330399826|gb|EGG79486.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] Length = 211 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA K G++ S +K +R +P+ +++ KI+ Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----FPTFDTLEKIMDVLGVM 65 Query: 69 ICQLLDLPFSDGRTTEKKE 87 +LL + +EK+ Sbjct: 66 PNELLSGEWKYVNQSEKEV 84 >gi|220924118|ref|YP_002499420.1| hypothetical protein Mnod_4241 [Methylobacterium nodulans ORS 2060] gi|219948725|gb|ACL59117.1| hypothetical protein Mnod_4241 [Methylobacterium nodulans ORS 2060] Length = 351 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 62/249 (24%), Gaps = 39/249 (15%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I+R E L+ + KAG P + +R + + ST ++ + Sbjct: 100 EILERIERRLEATGLSERAASEKAG-KPDAIRNLRRALEKDGRQGVSTATLNALAPVLGT 158 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--------GVFPTGNKWNTVG 119 T L + + G G+ Sbjct: 159 TSVWLFAGAGPEEPAKAPSSGSTSISSAAGGEEIVQATQPAVRVLYGGFVEAGSYREISE 218 Query: 120 V----PEIRSPHNGIYAIQTQDTRHKTQDTSML-----PLYRKGDILILN----SAIQVN 166 PE + Q + SM P+ R ++ L+ Sbjct: 219 FIDVPPEDIFLPPDSEYPRVQQVAFDVRGDSMNALTPRPILRGDRVVALDFEGLHGRVAL 278 Query: 167 CGDRLLIKP------RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMS-------DI 212 ++I + K L R S Y V S ++ Sbjct: 279 HTGMVVIVQQSREGGHLVERSVKQLEVYEDRYEFHPRSTVSRYKPIVVPHSMEADDGREV 338 Query: 213 EWIARILWA 221 +A WA Sbjct: 339 RILA---WA 344 >gi|167746452|ref|ZP_02418579.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] gi|167653412|gb|EDR97541.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] Length = 171 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KKI I + +T + L + G+ + ++ + P ++ + Sbjct: 16 LDQKKIGAFIALLRRERGITQAELGERIGVTNKTVSRWENGNY-----MPDIATMLSLCE 70 Query: 64 ATNETICQ 71 +I + Sbjct: 71 EFEISINE 78 >gi|158312832|ref|YP_001505340.1| putative phage repressor [Frankia sp. EAN1pec] gi|158108237|gb|ABW10434.1| putative phage repressor [Frankia sp. EAN1pec] Length = 105 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMS 197 + SM P GD ++ GD ++ + + K S L S Sbjct: 3 AVAVRGESMQPTLNDGDTCLVLWGASPRPGDVVVARLPERGLGVKRAEFTDPDGSWWLRS 62 Query: 198 LN----CCYPVD-TVEMSDIEWIARIL 219 N V D+ + R++ Sbjct: 63 DNVRAGTDSATFGMVPAGDV--LGRVV 87 >gi|154250733|ref|YP_001411557.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154683|gb|ABS61900.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 204 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 I + + H + LA++AG+ + + ++ I PS S+ K+L Sbjct: 23 KGPDIGARLRELRVMHGFSQRELAKRAGVTNGTISLIEQNRI-----SPSVGSLKKVLDG 77 Query: 65 TNETICQLLDLPFSDGRTTEKKEKE 89 +I L L + KE Sbjct: 78 FPISIADFLTLDMKPRAKVFYQAKE 102 >gi|289578606|ref|YP_003477233.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528319|gb|ADD02671.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 129 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + LT LA K G+ + + R P TE++ K+ + Sbjct: 5 KRLATLRKEAGLTQKELADKLGVSRGTIGMYEIGQ-----RDPDTETLQKLSDIFGVS 57 >gi|192291025|ref|YP_001991630.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284774|gb|ACF01155.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 474 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ E+ +T LA G+ P+ N+ + R + + K+ A Sbjct: 6 VGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQ-----RPLTVPVLLKLNATLGID 60 >gi|91210676|ref|YP_540662.1| hypothetical protein UTI89_C1653 [Escherichia coli UTI89] gi|117623680|ref|YP_852593.1| hypothetical protein APECO1_579 [Escherichia coli APEC O1] gi|218558366|ref|YP_002391279.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|237705412|ref|ZP_04535893.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91072250|gb|ABE07131.1| hypothetical protein YdcN [Escherichia coli UTI89] gi|115512804|gb|ABJ00879.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218365135|emb|CAR02845.1| putative DNA-binding transcriptional regulator [Escherichia coli S88] gi|222033183|emb|CAP75923.1| Uncharacterized HTH-type transcriptional regulator [Escherichia coli LF82] gi|226900169|gb|EEH86428.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294493300|gb|ADE92056.1| DNA-binding protein [Escherichia coli IHE3034] gi|307627046|gb|ADN71350.1| putative DNA-binding transcriptional regulator [Escherichia coli UM146] gi|312946016|gb|ADR26843.1| putative DNA-binding transcriptional regulator [Escherichia coli O83:H1 str. NRG 857C] gi|315289769|gb|EFU49159.1| helix-turn-helix protein [Escherichia coli MS 110-3] gi|323952682|gb|EGB48551.1| helix-turn-helix protein [Escherichia coli H252] gi|323956844|gb|EGB52577.1| helix-turn-helix protein [Escherichia coli H263] Length = 178 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163 >gi|227500450|ref|ZP_03930512.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098] gi|227217513|gb|EEI82832.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098] Length = 492 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 54/181 (29%), Gaps = 17/181 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S +K+ + + + LT + LA G++ ++ ++ PS + + Sbjct: 1 MKKLSIEKMADTVINKRKEMGLTQAKLAEMTGINRAMISRLEQADYT-----PSIDQLQA 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + I L + + + +G G + + N V + Sbjct: 56 IGEVLHFEIVDLFEEEEK--AENIIPIDKKYKIAVAGTGYVGMSIATLLSQHNHVEAVDI 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL---NSAIQVNCGDRLLIKPRT 177 + QD + + D+ ++ + D ++I T Sbjct: 114 VPEKVDLINKKISP-------IQDDYIEKYLAEKDLDLVATLDGESAYKDADFVVIAAPT 166 Query: 178 G 178 Sbjct: 167 N 167 >gi|330817706|ref|YP_004361411.1| transcriptional regulator [Burkholderia gladioli BSR3] gi|327370099|gb|AEA61455.1| transcriptional regulator [Burkholderia gladioli BSR3] Length = 183 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 5/75 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + ++H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVATRLQFIRKKHGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRT 82 ++ + F D Sbjct: 59 SLAEFFTFEFEDDAP 73 >gi|71278291|ref|YP_271323.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144031|gb|AAZ24504.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] Length = 180 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + + E + L+ LA++ GL ++ + +R + PS S+ KIL Sbjct: 2 DVGKRLKEVREMYGLSQRELAKRVGLTNSTISMIERDAV-----SPSISSLKKILE 52 >gi|77412886|ref|ZP_00789090.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161026|gb|EAO72133.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 117 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 11/105 (10%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ ++ L+ LA+K G+ P + + + +G + + + I + + + Sbjct: 8 NLIRLRKQKGLSQKELAKKIGMLPQTISNIENQ--KGYPTFSNLDKIARYFNVSATELFG 65 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + E + S + Sbjct: 66 TPQQIELERVMFQTDEYSRKAEKILSAVSVFENFVKKYDYQKIIE 110 >gi|302537531|ref|ZP_07289873.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] gi|302446426|gb|EFL18242.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] Length = 509 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T S LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|206559002|ref|YP_002229762.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035039|emb|CAR50911.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] Length = 189 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 10 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + R + E+P L S + + V + Sbjct: 65 SLAEFFTFELVESRAVVSRRDEMPNLGN-ESLAFQLVGANVKDRNMCILRETYQPLADTG 123 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + L + G +L+ GD + R + Sbjct: 124 PEMLVHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 171 Query: 188 RRGRSI-DLMSLNC 200 I +++S N Sbjct: 172 PSAELICEVVSANS 185 >gi|254386053|ref|ZP_05001368.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] gi|194344913|gb|EDX25879.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] Length = 509 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T S LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|330948546|gb|EGH48806.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. pisi str. 1704B] Length = 75 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212 +++++ + + + G ++ + + K+LI G + L S N YP + + Sbjct: 3 HDSLVVVDRSRKPSSGSIVIAAVN-NEPLCKILI-LHGDHVVLKSANPAYPPRHILEGEE 60 Query: 213 EWIARIL 219 I ++ Sbjct: 61 LSIWGVV 67 >gi|313496911|gb|ADR58277.1| Transcriptional regulator, putative [Pseudomonas putida BIRD-1] Length = 233 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 28/231 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR-----------NRWPSTES 57 + + + + LTPS A + + N KR R RW T Sbjct: 5 GDRLRALLQECGLTPSDFAAQRSVTAQHVNNWFKRGVPLARLDELADLFCVHRRWLRTGE 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K TE + + + + Y+ + Sbjct: 65 GPKHPNPLLRNGLPRPAPANPLTPLTEHRGRVLKVPYYEVRNG--------LLSPVGSKH 116 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P G+ A ++MLPL L ++ + + Sbjct: 117 LRLPAKALKGLGVQA--GNAICLAMPTSNMLPLIPLQATLAIDLGMTQVVEGETYALLQN 174 Query: 178 GDIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222 G + L ++ L S Y V+ + +E + + S Sbjct: 175 GMLRVNNLSLGPHDTLYLHSHDRRNYTVERYTAAQRQAQGLEILGWVFHWS 225 >gi|226951015|ref|YP_002806106.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226841154|gb|ACO83820.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 220 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 19/224 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--I 58 M+ S+K I + LT LA+K G+ N+ + + S + Sbjct: 1 MSRVSNK-----IKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 K + + + + L + K K + S + + Sbjct: 56 GKGINDIGISFEEEVSLESKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKK 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRT 177 +P + + GI+ Q + K ++ M KGDI ++ + Sbjct: 116 QLPVVGNKVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHN 172 Query: 178 GDIVAKVLISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217 + L G I L +SL + V + DI+ IAR Sbjct: 173 NKRSVRQLKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212 >gi|188587862|ref|YP_001920327.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498143|gb|ACD51279.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 179 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 14/140 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + LT LA + L ++ + PS ++ IL Sbjct: 2 QIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLMDILEILGT 56 Query: 68 TICQLLD--------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + D T+ +E + L++ P+ + + + Sbjct: 57 NLNEFFSETKEEQVIFSNDDMFKTDDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIE 116 Query: 120 VPEIRSPHNGIYAIQTQDTR 139 E Y + Sbjct: 117 -EEPHDGEEFGYVLSGSIYL 135 >gi|168181028|ref|ZP_02615692.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182668073|gb|EDT80052.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|322807884|emb|CBZ05459.1| putative transcription regulator, lacI/xre family [Clostridium botulinum H04402 065] Length = 220 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 14/217 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65 ++ + I + LT LA+K G+ N+ + + S + K + Sbjct: 3 RVSDKIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGKGINDI 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + L + K K + S + + +P + + Sbjct: 63 GISFEEEVSLESKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVVGN 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 GI+ Q + K ++ M KGDI ++ + + Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNNKRSVRQ 179 Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217 L G I L +SL + V + DI+ IAR Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212 >gi|314935353|ref|ZP_07842706.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313656688|gb|EFS20427.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I ++ + N++ LA K G+ S + +R P ++I +I N Sbjct: 4 KIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWERQVSN-----PDLKTILEITKLFNV 58 Query: 68 TICQLLDLPFSDGRTTE 84 ++ QL+ Sbjct: 59 SLNQLIKGVEIMQVNKY 75 >gi|229057010|ref|ZP_04196404.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] gi|228720287|gb|EEL71863.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] Length = 107 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKISAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + + + ++ S F Sbjct: 58 VDTLLHDETTTESHLDSEWTQLVKDAMSSGVSKEQFRE 95 >gi|223985169|ref|ZP_03635261.1| hypothetical protein HOLDEFILI_02567 [Holdemania filiformis DSM 12042] gi|223962878|gb|EEF67298.1| hypothetical protein HOLDEFILI_02567 [Holdemania filiformis DSM 12042] Length = 93 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 8/96 (8%) Query: 1 MTS---FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M SH I I +A+ ++ L++ +G+ ++ N P+ + Sbjct: 1 MKMSNELSH-TIKLRIQALAKEQGMSLYQLSQISGMTQSTVNNLMNRETS----SPTIAT 55 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I ++ T+ + D T+ KE Sbjct: 56 IKRLCDGLGITLAEFFDTDDFMELKTKPTPKEKNKE 91 >gi|332638348|ref|ZP_08417211.1| XRE family transcriptional regulator [Weissella cibaria KACC 11862] Length = 180 Score = 51.7 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 5/111 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + E ++ LA G+ S +K + PS +++ + Sbjct: 2 EIGHNIQQRREDKGMSQQDLADYLGISRQSISKWENGSA-----LPSFKNVLALSDLFVV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++ +L+ + E E + + W + Sbjct: 57 SLDELVKGDEALIEKFESGESTKITPANIIVFTTLVLGVVTYIIEKIWLHI 107 >gi|21226349|ref|NP_632271.1| putative inosine monophosphate dehydrogenase [Methanosarcina mazei Go1] gi|20904600|gb|AAM29943.1| putative inosine monophosphate dehydrogenase [Methanosarcina mazei Go1] Length = 187 Score = 51.7 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 11/112 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + LT S LA++AG+ + + ++ P ++ KIL A E + Sbjct: 9 LKKRRNELGLTQSDLAKRAGVSQPLIARIESGDVD-----PRLSTVRKILDAFEEAEKER 63 Query: 73 L------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + E +E+ L S P G+ + Sbjct: 64 QILIRDLMHSPVLHVSPEDSVEEVVNLMHVHGFSQIPVLDRGIPVGSVSEDM 115 >gi|300939145|ref|ZP_07153832.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300455960|gb|EFK19453.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 178 Score = 51.7 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163 >gi|293568751|ref|ZP_06680065.1| putative transcriptional regulator [Enterococcus faecium E1071] gi|291588468|gb|EFF20302.1| putative transcriptional regulator [Enterococcus faecium E1071] Length = 410 Score = 51.7 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 6/146 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + E+I E T LA K G+ + +K ++ R S E + Sbjct: 1 MNQVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RQLSEEKLNL 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119 IL + E + + + + + L+ F+ + P G V Sbjct: 56 ILDSLQEELVPVNRVLIDYLTIHFFSNQYLKLIEAIIGMPIERFEELDYAPKGYIGQYVW 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145 I ++ ++ Q Sbjct: 116 NQVITIRYSIDDTVKGTVMEFSGQGC 141 >gi|293409776|ref|ZP_06653352.1| conserved hypothetical protein [Escherichia coli B354] gi|291470244|gb|EFF12728.1| conserved hypothetical protein [Escherichia coli B354] gi|323976926|gb|EGB72013.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 178 Score = 51.7 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163 >gi|188494052|ref|ZP_03001322.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|331652693|ref|ZP_08353704.1| putative oxidoreductase/putative repressor [Escherichia coli M718] gi|331662905|ref|ZP_08363815.1| putative oxidoreductase/putative repressor [Escherichia coli TA143] gi|188489251|gb|EDU64354.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|331049799|gb|EGI21865.1| putative oxidoreductase/putative repressor [Escherichia coli M718] gi|331058704|gb|EGI30681.1| putative oxidoreductase/putative repressor [Escherichia coli TA143] Length = 178 Score = 51.7 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163 >gi|220924934|ref|YP_002500236.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949541|gb|ACL59933.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 232 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 36/227 (15%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + E I + L+ GL + ++ R + + +I A Sbjct: 20 RELLREWIAGQLRDRRIPQKALSSAIGLSEDAVSRMLSG-----KRTIKADELKRICAFL 74 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + T + +++ + + G F + ++ +P + Sbjct: 75 GASPP----------LTAQLPARDVSYVKVVGEVAAGAFIDMQYVDFVDYD---IPYVAD 121 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNC---GDRLLIKPRTG--- 178 P AI + + S+ R GD +I+ +++ GD ++++ R G Sbjct: 122 PRWPKEAIT----AYIVRGESINRQARDGDHIIVLDASAAPRPYQSGDWVVVEQRCGDLV 177 Query: 179 DIVAKVLISRRGRSIDLMSL-NCC--YPVDTVE---MSDIEWIARIL 219 + K + + +L N V ++ I +L Sbjct: 178 ETTVKQV-RGSEGAWELWPDSNDDRFQRPLVVAGNGGDNVRVIGFVL 223 >gi|187933000|ref|YP_001885196.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|187721153|gb|ACD22374.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] Length = 179 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 14/140 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + LT LA + L ++ + PS ++ IL Sbjct: 2 QIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLMDILEILGT 56 Query: 68 TICQLLD--------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + D T+ +E + L++ P+ + + + Sbjct: 57 NLNEFFSETKEEQVIFSNDDMFKTDDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIE 116 Query: 120 VPEIRSPHNGIYAIQTQDTR 139 E Y + Sbjct: 117 -EEPHDGEEFGYVLSGSIYL 135 >gi|229074639|ref|ZP_04207662.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] gi|228708521|gb|EEL60671.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] Length = 107 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 >gi|56419028|ref|YP_146346.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56378870|dbj|BAD74778.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 125 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ + LT L +K + S + + R P TE++ K+ N T Sbjct: 7 LGDRLRKLRQEKKLTQEELGKKINVTKVSISGYENGN-----RTPDTETLQKLADFFNVT 61 Query: 69 ICQLLDLPFSDGRTTEKK 86 LL + Sbjct: 62 TDYLLGRTDHPNPPDQDD 79 >gi|229029511|ref|ZP_04185592.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] gi|228731793|gb|EEL82694.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] Length = 181 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ AG+ P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|260905809|ref|ZP_05914131.1| Helix-turn-helix family protein [Brevibacterium linens BL2] Length = 183 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 20/165 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--- 57 M+S ++I AI R R +L+ S +AR+AG+ ++ + + PS E+ Sbjct: 1 MSSQPREQIAAAIKRERLRADLSLSEVARRAGIGKSTMSGLEAGTGN-----PSVETMWA 55 Query: 58 --------IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + ++L + L+ + LL P+ + Sbjct: 56 LAAALDIPLARLLDPPQHEV-ALVHAKDLPSLPSNTANYAATLLSASPANARRDVYFIQA 114 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 G ++ P H + R + S Sbjct: 115 EPGQPRDSQPHPIGTVEH---VILGQGAARIEVLGNSYELHVGDY 156 >gi|291536677|emb|CBL09789.1| transcriptional regulator, XRE family [Roseburia intestinalis M50/1] Length = 68 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +KI I + + ++ LA A LD T + R PS +S+ KIL A + Sbjct: 4 EKIGSRIKELRKEKGISQEKLAFSADLDRTYVAGVESG-----KRNPSVKSLEKILVALD 58 Query: 67 ETICQLLDL 75 + + Sbjct: 59 VSFEEFFKN 67 >gi|284921317|emb|CBG34385.1| putative transcriptional regulator [Escherichia coli 042] Length = 178 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163 >gi|282601309|ref|ZP_06257987.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569451|gb|EFB74986.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 10/104 (9%), Positives = 27/104 (25%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + E + +A+ G +S N+ + PS E + + Sbjct: 3 EVGRRLKALRESIGFSQVKMAQALGTTQSSINRYENGQS-----SPSVELFRRYADYFDV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ + T + + P Sbjct: 58 SLDYIFARTDKPQGETYHFKPKAAPEREELRRFIEMCFDPQSPM 101 >gi|237748329|ref|ZP_04578809.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229379691|gb|EEO29782.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 131 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 5/107 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KI + I+ N + S LARK G+ P + K ++ P ++ K+ Sbjct: 2 DKIAKRIENCRRHLNFSQSELARKVGVTPQAVQKWEKAKTV-----PRGYTLEKLAGVLG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + ++ Y S Sbjct: 57 VSPAYIQFGITDASSGGHFSVEDEKTEYLVTGCSKQEEWPFSISREQ 103 >gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 188 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I +I R ER L+ S LA++AG+ ++ ++ + PS E+++ + A Sbjct: 13 QIAASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGN-----PSVETLWALAVALGV 67 Query: 68 TI 69 Sbjct: 68 PF 69 >gi|170756661|ref|YP_001783198.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|170758689|ref|YP_001788899.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169121873|gb|ACA45709.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169405678|gb|ACA54089.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 220 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 14/217 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65 ++ + I + LT LA+K G+ N+ + + S + K + Sbjct: 3 RVSDKIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGKGINDI 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + L + K K + S + + +P + + Sbjct: 63 GISFEEEVSLEPKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVVGN 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 GI+ Q + K ++ M KGDI ++ + + Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNNKRSVRQ 179 Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217 L G I L +SL + V + DI+ IAR Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212 >gi|153940644|ref|YP_001392517.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152936540|gb|ABS42038.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|295320504|gb|ADG00882.1| putative transcriptional regulator [Clostridium botulinum F str. 230613] Length = 121 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + L+ LA+K GL ++ + EG E+I KI Sbjct: 3 NLGERLKELRNEAKLSQKDLAKKLGLSSSTVGMIESGKREGNK-----ETIQKIANFFGV 57 Query: 68 TICQLL 73 +I L Sbjct: 58 SIDYLY 63 >gi|239983013|ref|ZP_04705537.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291454845|ref|ZP_06594235.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291357794|gb|EFE84696.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] Length = 509 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|74312212|ref|YP_310631.1| hypothetical protein SSON_1704 [Shigella sonnei Ss046] gi|73855689|gb|AAZ88396.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323169618|gb|EFZ55286.1| helix-turn-helix family protein [Shigella sonnei 53G] Length = 178 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P S + +++ ++ +G + + H Sbjct: 67 ISPPQSAMPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124 >gi|152974807|ref|YP_001374324.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023559|gb|ABS21329.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 107 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQ----NPSIQFLEKIAAVLQIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 I LL + + + S F Sbjct: 58 IDTLLHDTTPLENQLDSEWTHLVKEAMNSGVSKEQFRE 95 >gi|258405832|ref|YP_003198574.1| CI repressor [Desulfohalobium retbaense DSM 5692] gi|257798059|gb|ACV68996.1| CI repressor [Desulfohalobium retbaense DSM 5692] Length = 212 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 54/198 (27%), Gaps = 16/198 (8%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 S LA+ G+ + + K+ +RW S L Sbjct: 20 NQSQLAKVLGVGRAAISLVKQKNSVP-SRWILLLSRAYDLDPVWLAGEDEEPEQDMSSAD 78 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142 + +P + G P G P + + Q Sbjct: 79 HTEGIATLPWVRPELDPGTGTLRPLERP--------GWPVSAGWLSQWGS-PEQTVVLYA 129 Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 ++ P GDIL ++ A + + I+ + L + + L Sbjct: 130 PSAALEPEITPGDILAVDQAQTTATDGGIFLLTLPTGIILRRLWLQPDG-VRLEPG---- 184 Query: 203 PVDTVEMSD-IEWIARIL 219 T++ + + + R+L Sbjct: 185 SDQTLQAEEGGDLLGRVL 202 >gi|255010194|ref|ZP_05282320.1| hypothetical protein Bfra3_13720 [Bacteroides fragilis 3_1_12] gi|313147988|ref|ZP_07810181.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136755|gb|EFR54115.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 218 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 61/217 (28%), Gaps = 13/217 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ E + K G+ SF + ++ ++ +I IL+ + Sbjct: 2 IKDRIIQIIENKGIAKESFYTKIGMTSASF------RGKAKSMPLNSNAIENILSEIPDL 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L + P + + G+ + + N + + Sbjct: 56 NAEWLLTGKGSMLKESSQAIPTPTINYEYKGAPYYNVDFIGGFDLVLNDQTINPDYYINF 115 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIVAKVL 185 Y SM P GD + L + K + Sbjct: 116 EPYNKPG-VVWCNITGHSMEPELSNGDYIALKEMTDPVQYLPYGEIYAIVTESYRTVKRI 174 Query: 186 ISRRGRS-IDLMSLN--CCYPVDTVEMSDIEWIARIL 219 + + L+ N Y + +S I+ + +L Sbjct: 175 GKAEQKDFVRLIPTNKSPEYSPQDIPISMIQKVYAVL 211 >gi|309778439|ref|ZP_07673354.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308913802|gb|EFP59627.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 211 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA K G++ S +K +R +P+ +++ KI+ T Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGMN-----YPTFDTLEKIMDVLGVT 65 Query: 69 ICQLLDLPFSDGRTTEKKE 87 +LL + EK+ Sbjct: 66 PNELLSGEWKYVNQAEKEV 84 >gi|307276550|ref|ZP_07557668.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506660|gb|EFM75812.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 418 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 6/146 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + E+I E T LA K G+ + +K ++ R S E + Sbjct: 1 MNQVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RQLSEEKLNL 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119 IL + E + + + + + L+ F+ + P G V Sbjct: 56 ILDSLQEAVIPVNRVLIDYLTIHFFSNQHLKLIEEIIGMPIERFEELDYAPKGYIGQYVW 115 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145 I ++ ++ Q Sbjct: 116 NQVITIRYSIDDTVKGTVMEFSGQGC 141 >gi|257413316|ref|ZP_05591602.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203934|gb|EEV02219.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 187 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I+++ + +T LA K + + +K + P ESI KI + Sbjct: 16 EIGNKINQLRKLSGMTQEQLAEKLNVSRQTISKWESDST-----SPDLESIVKISRIFHV 70 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 ++ LL + ++ + L + Sbjct: 71 SLDDLLKEGEAGVANKTDEQITLEDLMKINLHN 103 >gi|170721568|ref|YP_001749256.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169759571|gb|ACA72887.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 181 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 23/193 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ER+NL+ LAR++GL ++ ++ ++ + PS S+ K+L T+ Sbjct: 4 GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRV-----SPSVSSLKKLLEGIPMTL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + G + G Sbjct: 59 AEFFSFDEPVREERF-------VFRASEQPDLGRNGLRMLLVGASVEA----RQMRMLRE 107 Query: 130 IYAIQTQDTRHKTQDTSMLPLY--RKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLI 186 +YA R L ++ + V GD I Sbjct: 108 LYAPGADSGEPIVHAEGEECGLVTRGTVELWVDGQVSVLNSGDGYYIPTTLPHS----FK 163 Query: 187 SRRGRSIDLMSLN 199 + +++S N Sbjct: 164 NIGQDEAEIISAN 176 >gi|187777459|ref|ZP_02993932.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC 15579] gi|187774387|gb|EDU38189.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC 15579] Length = 220 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 14/217 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65 ++ + I + LT LA+K G+ + N+ + + S + K + Sbjct: 3 RVSDKIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGKGINDI 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + K K + S + + +P I + Sbjct: 63 GISFEEEVSSEPKREIPINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVIGN 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 GI+ Q + K ++ M KGDI ++ + + Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYIHYEMENNCI-FLIEHNNKRSVRQ 179 Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217 L G I L +SL + V + DI+ IA+ Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAK 212 >gi|323357690|ref|YP_004224086.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274061|dbj|BAJ74206.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 209 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 47/168 (27%), Gaps = 12/168 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + + + LT + LA A L ++ +R PS S+ ++ A Sbjct: 18 ERLGARVRGLRKARGLTLTQLAEAAALSHPFLSQLERGLAR-----PSMASLERLARALG 72 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + +L+ + + + + ++ + + Sbjct: 73 TSRVELIAASEPRRADADAEPSFVLADEGAIGPYAEGTARLLADGPRRFEPLEFSGSNAE 132 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 Y + + + L + V GD + + Sbjct: 133 AGDHYVHEEDEFLTVLEG-----TIVISFGLFGERRLSV--GDSVYCR 173 >gi|325279967|ref|YP_004252509.1| peptidase S24/S26A/S26B [Odoribacter splanchnicus DSM 20712] gi|324311776|gb|ADY32329.1| Peptidase S24/S26A/S26B, conserved region [Odoribacter splanchnicus DSM 20712] Length = 790 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 18/120 (15%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL- 171 E G+ + + + SM P GD + + I G + Sbjct: 662 GEWQQAEEEGWIKTEGMGKLTSGMFIIQANGHSMEPRIMDGDFCVFRANIVGSRIGKIVL 721 Query: 172 ------LIKPRTGDIVAKVLISRRGR----------SIDLMSLNCCYPVDTVEMSDIEWI 215 G K S + + I L LN Y + + + Sbjct: 722 VQHPEHYDFENGGSYSIKKYSSEKKQDPETGEWMHERIILYPLNPDYQPIEIRNEEGFIV 781 >gi|189220309|ref|YP_001940949.1| SOS-response transcriptional repressor LexA/UmuD (HTH, RecA-mediated autopeptidase) [Methylacidiphilum infernorum V4] gi|189187167|gb|ACD84352.1| SOS-response transcriptional repressor LexA/UmuD (HTH, RecA-mediated autopeptidase) [Methylacidiphilum infernorum V4] Length = 188 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 8/105 (7%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178 + + S + K SM R GDIL+++ A + G ++ G Sbjct: 78 LEKSLSLDELLIKRPAATFFVKASGNSMEGEGIRDGDILVVDRAEKPKNGSIVVAAIN-G 136 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIE-WIARIL 219 ++V K L L S+ M ++E I ++ Sbjct: 137 ELVVKKL-WMEAGHSWLKSV-PAEGAKAFSMEIHEEVELVIWGVV 179 >gi|148360856|ref|YP_001252063.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby] gi|296106080|ref|YP_003617780.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99 Alcoy] gi|148282629|gb|ABQ56717.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby] gi|295647981|gb|ADG23828.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99 Alcoy] Length = 224 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 55/217 (25%), Gaps = 23/217 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I R L+ L K G+ + + S+ IL + + Sbjct: 15 GQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNK--AKAASLVGILNQYDVSC 72 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + + + + + I+ + Sbjct: 73 SIDWLLEGIGKGPSVIENEFQNYPFLADTVGNLLASEQ--------------AIQKEIDF 118 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV----AKVL 185 D +M P Y+ GDI+ I N ++ + + + L Sbjct: 119 FKTNNPNAVVITVSDDAMEPEYKVGDIVGGIKFINQNKKNQCVGHNCIVETTEGTFFRRL 178 Query: 186 ISRRGRSIDLMSLNC--CYPVDTVEMSDIEWIARILW 220 I L+ N + I IA ++W Sbjct: 179 IKSED-KYLLVCNNNRTSVSDPVMSADSILSIAPVIW 214 >gi|325915811|ref|ZP_08178110.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325537932|gb|EGD09629.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 462 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 7 PVLRH-QLGLRLQRLRQRHGLTQAELARRLALSPSYLNQIERNQRP 51 >gi|24376244|ref|NP_720352.1| SOS mutagenesis protein RulA [Shewanella oneidensis MR-1] gi|24344710|gb|AAN52952.1| SO_S mutagenesis protein RulA [Shewanella oneidensis MR-1] Length = 134 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 12/124 (9%) Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 P P S + + Q SM + GD+ Sbjct: 1 MRVIPIPAQAGITGFESPAAEYTQLGLSLDELLIIHPSASFLCVAQGDSMQGVGIYDGDV 60 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWI 215 LI++ GD ++ + +I R + L+S N + TV+ D Sbjct: 61 LIVDRHETARNGDVIVA--NFNGLFVCKII-DTQRRL-LLSCNEQFQPVTVQEFDDFSIE 116 Query: 216 ARIL 219 ++ Sbjct: 117 GVVI 120 >gi|21225095|ref|NP_630874.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256783752|ref|ZP_05522183.1| DNA-binding protein [Streptomyces lividans TK24] gi|289767634|ref|ZP_06527012.1| DNA-binding protein [Streptomyces lividans TK24] gi|6855358|emb|CAB71249.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] gi|289697833|gb|EFD65262.1| DNA-binding protein [Streptomyces lividans TK24] Length = 192 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/165 (9%), Positives = 45/165 (27%), Gaps = 10/165 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESIFKI 61 ++ + + + LA ++G+ ++ ++++R + ++ ++ Sbjct: 14 RLAARLAELRAERGWSLGELAERSGVSRSTLSRAERAETSPTAAVLNRLCAVYGRTMSRL 73 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L+ L+ + P G G G G P Sbjct: 74 LSEVEAEPALLVRAAEQPVWEDRPAGFVRRSVSPPHPGLRGELVEGRLAAGADIAY-DRP 132 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + ++ ++ + + GD L + Sbjct: 133 PVPGLEQHVWLLEG---ALEITAQDVEHHLAAGDCLRMRVWGPTR 174 >gi|319760985|ref|YP_004124922.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317115546|gb|ADU98034.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 102 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I +AI + L+ + LA++AG+ + + +R R P ++ +I AA Sbjct: 2 NIGQAIQLARSKRKLSQAALAKRAGISVSYLSLLERG-----RRDPPLSTLQRIAAALVM 56 Query: 68 T 68 Sbjct: 57 P 57 >gi|312127026|ref|YP_003991900.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311777045|gb|ADQ06531.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 267 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 6 HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I+ + + E NLT + LA K G+ + + + R P +++ KI Sbjct: 2 EENIFAVRLKELREEANLTQNELAEKLGIGRATLSNYELGV-----RKPDIDTLQKIA 54 >gi|254459203|ref|ZP_05072625.1| putative repressor [Campylobacterales bacterium GD 1] gi|207084096|gb|EDZ61386.1| putative repressor [Campylobacterales bacterium GD 1] Length = 124 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 1/86 (1%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + K SM P+ + +++ + + + + + + K + + Sbjct: 34 KGSLFVIKVDGESMEPVIKDRTLVVADLSQRGVVDADIYLVYYENRMWIKK-AKQESDGM 92 Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219 +S+N Y + +D+ +A+ + Sbjct: 93 TFVSINKEYGHLVYKEADVRVVAKAV 118 >gi|152982223|ref|YP_001353027.1| hypothetical protein mma_1337 [Janthinobacterium sp. Marseille] gi|151282300|gb|ABR90710.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 152 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 12/115 (10%), Positives = 32/115 (27%), Gaps = 2/115 (1%) Query: 9 IWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I +D+ + + + S LAR +G+ + ++ + + + + K + Sbjct: 26 IGNRLDQAMKAARIKSQSELARISGVPQATISRILKGVGSKGPETETVKKLAKACRVSFS 85 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVP 121 + + E + T +T+ P Sbjct: 86 WLNEGTAGDDEHAGAQEDSYPAMDKRIAHAVKLMQQMPEYKLNQTIKIIDTIAEP 140 >gi|312882544|ref|ZP_07742285.1| putative phage repressor [Vibrio caribbenthicus ATCC BAA-2122] gi|309369944|gb|EFP97455.1| putative phage repressor [Vibrio caribbenthicus ATCC BAA-2122] Length = 236 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 48/201 (23%), Gaps = 22/201 (10%) Query: 39 NKSKRFGIEGRNR-------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 N + EG R + +++ + + L + Sbjct: 30 NNWLKRKAEGNGRAMEYHISNFGPDVRKRLIETYVTDESERIQLLDKFKTLPPNNAYGLK 89 Query: 92 LLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 L + G +P G+ + Sbjct: 90 PLSEFSEWAKLPVYDVHAAAGAGTLVQTEYQIGVFSLPVELLVEYGL--RPEFSSIIFVD 147 Query: 144 DTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID-LMSLNCC 201 SM P D L+++ Q + + + + K L S ++S N Sbjct: 148 GDSMEPTLSDRDRLLVDIREQQHPVANGVYVIRIDEAVYVKRLHWDIEHSFYKVISDNLK 207 Query: 202 YPVDTVEM---SDIEWIARIL 219 +P + + I + + Sbjct: 208 HPAFNINHKNGRNFRIIGKAV 228 >gi|293371176|ref|ZP_06617712.1| bacteriophage CI repressor protein [Bacteroides ovatus SD CMC 3f] gi|292633737|gb|EFF52290.1| bacteriophage CI repressor protein [Bacteroides ovatus SD CMC 3f] Length = 233 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 21/227 (9%) Query: 8 KIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I R + NL S LA + + RN + K + Sbjct: 2 DVLGIIKRAKQALNLKRDSELAEYLKVSRATVTNW-----GARNSIDFRLLLDKFGDKVD 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 L + E + + T + Sbjct: 57 YNWLLLGKGNPKHQPRFCQSELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANLKTLFT 116 Query: 127 HNGIYAIQT--------QDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKP 175 + YA+ D SM P+ + GDI+ ++S V G+ L+ Sbjct: 117 NKQQYALGKIWIPNISVCDGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSF 176 Query: 176 RTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + K + + + L+S N + + + I +A + Sbjct: 177 MIDGDEYLAVKYVNRSEKEGYLKLVSYNTHHEPMDIPFASINAMAIV 223 >gi|91790801|ref|YP_551752.1| SOS mutagenesis protein UmuD [Polaromonas sp. JS666] gi|91700681|gb|ABE46854.1| UmuD protein. Serine peptidase. MEROPS family S24 [Polaromonas sp. JS666] Length = 146 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 3/89 (3%) Query: 132 AIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + + SM+ GD+L++ + G ++ G+ + K+L R Sbjct: 51 SDKEDAFFMMASGHSMVKFGIFDGDLLLIRKRKRPRDGHIVI-ADVDGEFLVKMLYKR-A 108 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + L+S N P + + ++ Sbjct: 109 GQVKLVSGNPEIPDLEPKDGQTIRVWGVV 137 >gi|85716772|ref|ZP_01047739.1| hypothetical protein NB311A_10318 [Nitrobacter sp. Nb-311A] gi|85696379|gb|EAQ34270.1| hypothetical protein NB311A_10318 [Nitrobacter sp. Nb-311A] Length = 199 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 I + + E+ L+ L+ + G+ + +K + G + R S + + L Sbjct: 11 DDILQTLRAAREQTGLSQRDLSARIGVPQSHISKIESGGTD--LRLSSLVELARALDY 66 >gi|117618127|ref|YP_856555.1| putative DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559534|gb|ABK36482.1| putative DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 201 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 19/157 (12%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + L P+ LARK GL + + P S+ I Sbjct: 6 ERLRQLMDESGLKPADLARKTGLSKPTLSAILNGTTT----DPRISSVLSIARVVGCDPI 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 QL K S G + + + + + + + Sbjct: 62 QLYV------------GKSSSEFASSAEISRVPIWELEDIAGQPSDALPLID--TGRHLV 107 Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 + + RKGD ++++ A + Sbjct: 108 VEDGGHLCAVVAGNDDLAGSGIRKGDFIVIDMATEQR 144 >gi|309701701|emb|CBJ01009.1| putative transcriptional regulator [Escherichia coli ETEC H10407] gi|323937517|gb|EGB33787.1| helix-turn-helix protein [Escherichia coli E1520] Length = 178 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 8/120 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 10 ATLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFS 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P S + +++ ++ +G + + H Sbjct: 65 TFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124 >gi|229101980|ref|ZP_04232694.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] gi|228681563|gb|EEL35726.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] Length = 107 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + PS + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57 >gi|329957103|ref|ZP_08297670.1| bacteriophage CI repressor protein [Bacteroides clarus YIT 12056] gi|328523371|gb|EGF50470.1| bacteriophage CI repressor protein [Bacteroides clarus YIT 12056] Length = 219 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 49/206 (23%), Gaps = 23/206 (11%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + A+ G+ + + R + I L Sbjct: 18 NKAKFAQLLGVSAQTISAW-------GARNTFDSEL--IYTKCIGLSPDWLLTGEGSMLR 68 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIYAIQTQDTR 139 P+ G + + F G ++ + +P+ + + Sbjct: 69 VNDAPTSEPIPSINQEYKGAPYFNVDFIGGFEFVFNDQTQLPDYYINYPPY--NKPGVMW 126 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIVAKVLISRRGRS-IDL 195 SM P GD++ L + K + + + L Sbjct: 127 CNLTGHSMEPEISNGDVIALKEVKSPIEYLPAGEIYGIITDDYRTVKRIRPGAQKGFVRL 186 Query: 196 MSLN--CCYPVDTVEMSDIEWIARIL 219 + N + + +E I R+ Sbjct: 187 IPANKSPEFCEQEIP---VEMIRRVF 209 >gi|227529402|ref|ZP_03959451.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540] gi|227350681|gb|EEJ40972.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540] Length = 65 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%) Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 V GD + + + K LI G+ L LN YP+ + +++ ASQ Sbjct: 3 VEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 58 >gi|119487560|ref|ZP_01621170.1| hypothetical protein L8106_26927 [Lyngbya sp. PCC 8106] gi|119455729|gb|EAW36865.1| hypothetical protein L8106_26927 [Lyngbya sp. PCC 8106] Length = 84 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 29/66 (43%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + ++ LAR+ G+ + ++ + P +++ ++L + +TI L Sbjct: 16 LKKLRDELGMSQEELARQLGISSRTVSRWEAGDNVPTFTIPQIKALARLLESKGKTIEDL 75 Query: 73 LDLPFS 78 D Sbjct: 76 PDHFGP 81 >gi|78046918|ref|YP_363093.1| putative DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035348|emb|CAJ22993.1| putative DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 461 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50 >gi|254160927|ref|YP_003044035.1| Repressor protein [Escherichia coli B str. REL606] gi|253972828|gb|ACT38499.1| Repressor protein [Escherichia coli B str. REL606] gi|253977048|gb|ACT42718.1| Repressor protein [Escherichia coli BL21(DE3)] Length = 187 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 54/210 (25%), Gaps = 40/210 (19%) Query: 12 AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI+RM E + T L G+ ++ + R E + + T ++ Sbjct: 8 AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L S + E+ G R Sbjct: 61 NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDGFYIFDREFLPS 106 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + G ++ G+I + + Sbjct: 107 AFKN------LFVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 152 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ D+E I +I+ Sbjct: 153 GGRIFVEGGNRAF---ECKIEDVEIIGKII 179 >gi|253774148|ref|YP_003036979.1| CI repressor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297520844|ref|ZP_06939230.1| CI repressor [Escherichia coli OP50] gi|242376640|emb|CAQ31350.1| ybl29 [Escherichia coli BL21(DE3)] gi|253325192|gb|ACT29794.1| CI repressor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 189 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 54/210 (25%), Gaps = 40/210 (19%) Query: 12 AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI+RM E + T L G+ ++ + R E + + T ++ Sbjct: 10 AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L S + E+ G R Sbjct: 63 NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDGFYIFDREFLPS 108 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + G ++ G+I + + Sbjct: 109 AFKN------LFVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 154 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ D+E I +I+ Sbjct: 155 GGRIFVEGGNRAF---ECKIEDVEIIGKII 181 >gi|319942064|ref|ZP_08016383.1| peptidase S24 and S26 domain-containing protein [Sutterella wadsworthensis 3_1_45B] gi|319804448|gb|EFW01326.1| peptidase S24 and S26 domain-containing protein [Sutterella wadsworthensis 3_1_45B] Length = 315 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 3/81 (3%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + SM+ GD+LI + Q GD +L G+I Sbjct: 209 EDIDLSAWLVRKPNSTFIVEASGDSMIDAGISDGDMLIFDRDAQPRGGDIVLALYD-GNI 267 Query: 181 VAKVLISRRGRSIDLMSLNCC 201 K L +L N Sbjct: 268 TVKRLRIV-DGRPELHPENAA 287 >gi|239945081|ref|ZP_04697018.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 15998] gi|239991543|ref|ZP_04712207.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 11379] gi|291448543|ref|ZP_06587933.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] gi|291351490|gb|EFE78394.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] Length = 509 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|154499775|ref|ZP_02037813.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] gi|150271373|gb|EDM98630.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] Length = 267 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ ++ L+ LA K + + +K + P + I ++ N + Sbjct: 3 LGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQS-----LPDLDFIAQLSDIFNVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 L+ ++ K++ L + G Sbjct: 58 SDYLIKDEMTEPDELPYKKRNYRLSERSKRIILVIVSAAALVAG 101 >gi|134298753|ref|YP_001112249.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051453|gb|ABO49424.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 67 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ E+ L+ + LA+ A + ++ + + R P +++ K+ Sbjct: 5 NLKQLREQKGLSQNQLAKLANVPQSAIHYIENGE-----RNPGLQTVEKLADGLG 54 >gi|270307510|ref|YP_003329568.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] gi|270153402|gb|ACZ61240.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] Length = 72 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 9/77 (11%) Query: 3 SFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + K I E I + ++ ++ LA +AG+ T +R R PS ++I Sbjct: 1 MMTEKTIEQRFGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGE-----RNPSLKNI 55 Query: 59 FKILAATNETICQLLDL 75 + I A + L Sbjct: 56 YAISKALKVPVSDLFKN 72 >gi|260587052|ref|ZP_05852965.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542542|gb|EEX23111.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 215 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 11/187 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I+ + ++H L+ A + + + + +P E I KI Sbjct: 2 NIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKS-----YPDLEMIIKISDYFKI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGVPEIRSP 126 ++ +LL + ++K G ++V V Sbjct: 57 SVDELLRNDVQSEEKIDNEKKVKKRYLILLLVLCFLGAMIIWGLYGKYQDSVAVNFTMEK 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 H +T++ + K + L + + G + + KV Sbjct: 117 HETYKNNETKEQSINIANGYF--SVPKDEKLSVQVKGDTDDGKLHVTITNQDN---KVYY 171 Query: 187 SRRGRSI 193 G+ + Sbjct: 172 QLDGQEL 178 >gi|239928289|ref|ZP_04685242.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291436618|ref|ZP_06576008.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291339513|gb|EFE66469.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] Length = 509 Score = 51.3 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I + T + LA G ++ N+ +R S E I +I A Sbjct: 8 RIGRLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|218694781|ref|YP_002402448.1| transcriptional repressor DicA [Escherichia coli 55989] gi|309793330|ref|ZP_07687757.1| transcriptional repressor DicA [Escherichia coli MS 145-7] gi|218351513|emb|CAU97222.1| putative repressor protein of division inhibition from phage origin [Escherichia coli 55989] gi|308122917|gb|EFO60179.1| transcriptional repressor DicA [Escherichia coli MS 145-7] Length = 152 Score = 51.3 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + K + + I ++ L+ +GL++ AG+ +S + + P +++ ++ Sbjct: 18 MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 72 Query: 64 ATNETICQLLDLPFSDGRTTE 84 + +L Sbjct: 73 VLQCSPTWILFGDEDKTPAPP 93 >gi|220935340|ref|YP_002514239.1| hypothetical protein Tgr7_2172 [Thioalkalivibrio sp. HL-EbGR7] gi|219996650|gb|ACL73252.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7] Length = 126 Score = 51.3 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 5/102 (4%) Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 V P++ P G ++ + SM P + G I+I++ A V G ++ + Sbjct: 15 VETPDV-DPGVGSGCATSEPFALRVLGDSMSPEFEHGVIIIVDPAGHVESGSYVVAR--H 71 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + L++L + + ++ IA ++ Sbjct: 72 EEEYLFRQLLIEEGRYYLVALKDDHRKLEISG--VDAIAGVV 111 >gi|154500477|ref|ZP_02038515.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] gi|150270708|gb|EDM98004.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] Length = 259 Score = 51.3 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 5/94 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ ++ LA G+ + K + + P+ +++ I T+ Sbjct: 4 ERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQ-----PNIDNLVAISEYFGVTLD 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 LL ++ ++ + P + + Sbjct: 59 YLLKGDEPGWEESDIPFEDTSQVICAPYRTHYEY 92 >gi|153810274|ref|ZP_01962942.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] gi|149833453|gb|EDM88534.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] Length = 124 Score = 51.3 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 8/109 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +I E I ++ L+ LA + G++ + K + R P E + K Sbjct: 24 MKDM---EINEKIRYFRKQRGLSQELLAERTGINVNTIRKYEIGI-----RKPKVEQLKK 75 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 I ++ + LD+ + K+I + Sbjct: 76 IADGLEISVIEFLDIEIENEADLIAMLKKISPFFKWDGLLHVLVGEKFL 124 >gi|222150964|ref|YP_002560117.1| hypothetical protein MCCL_0714 [Macrococcus caseolyticus JCSC5402] gi|222120086|dbj|BAH17421.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 180 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 12/146 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 DIGKKIKDLRRQKNLTQEELGERTDLSKGYISQLERNLC-----SPSMETFFNILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126 + R K ++ G+ + + P N+++ V P Sbjct: 57 KPKDFFSEQQYEQRIHYPKSEQTIY----DEYDDGYMINWLVPDSNEFDMEPVIITIEPG 112 Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPL 150 + + + Q + + + Sbjct: 113 KKYKKFLPSMSDSFIYVLQGEASIHI 138 >gi|146291286|ref|YP_001181710.1| putative prophage repressor [Shewanella putrefaciens CN-32] gi|145562976|gb|ABP73911.1| putative prophage repressor [Shewanella putrefaciens CN-32] Length = 141 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 12/123 (9%) Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 P P S + + SM + GD+ Sbjct: 1 MRVIPIPAHAGITGFESPAAEYTQLGLSLDELLITHPNASFLCLAEGDSMQDVGIYDGDV 60 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWI 215 LI++ GD ++ + LI R + L+S N Y +V + Sbjct: 61 LIVDRHETARNGDVIVA--NFNGLFVCKLI-DTQRRL-LLSCNEQYQPVSVHEYDEFSIE 116 Query: 216 ARI 218 + Sbjct: 117 GVV 119 >gi|314937221|ref|ZP_07844566.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313654654|gb|EFS18401.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I ++ + N++ LA K G+ S + +R P ++I +I N Sbjct: 4 KIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSN-----PDLKTILEITKLFNV 58 Query: 68 TICQLLDLPFSDGRTTE 84 ++ QL+ Sbjct: 59 SLNQLIKGVEIMQVNKY 75 >gi|166712847|ref|ZP_02244054.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] Length = 461 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50 >gi|14141827|ref|NP_115293.1| hypothetical protein SAVP004 [Staphylococcus aureus subsp. aureus Mu50] gi|228475859|ref|ZP_04060571.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|14020888|dbj|BAB47512.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|228270091|gb|EEK11556.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I ++ + N++ LA K G+ S + +R P ++I +I N Sbjct: 4 KIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSN-----PDLKTILEITKLFNV 58 Query: 68 TICQLLDLPFSDGRTTE 84 ++ QL+ Sbjct: 59 SLNQLIKGVEIMQVNKY 75 >gi|256422517|ref|YP_003123170.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037425|gb|ACU60969.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 97 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I +AI + + N+T LA K G+ T + + + PS S+ KI A Sbjct: 2 NIGKAIQTLRTKKNITQKELAEKIGITQTGLSYIETGV-----KHPSENSLEKIANALGS 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|218705070|ref|YP_002412589.1| transcriptional repressor DicA [Escherichia coli UMN026] gi|291283201|ref|YP_003500019.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300895972|ref|ZP_07114540.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|301326444|ref|ZP_07219796.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|218432167|emb|CAR13055.1| putative repressor protein of division inhibition from phage origin [Escherichia coli UMN026] gi|290763074|gb|ADD57035.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300360122|gb|EFJ75992.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|300846860|gb|EFK74620.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|320652127|gb|EFX20458.1| transcriptional repressor DicA [Escherichia coli O157:H- str. H 2687] gi|320657721|gb|EFX25510.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 152 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + K + + I ++ L+ +GL++ AG+ +S + + P +++ ++ Sbjct: 18 MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 72 Query: 64 ATNETICQLLDLPFSDGRTTE 84 + +L Sbjct: 73 VLQCSPTWILFGDEDKTPAPP 93 >gi|218694976|ref|YP_002402643.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|300823240|ref|ZP_07103372.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|331667806|ref|ZP_08368670.1| putative oxidoreductase/putative repressor [Escherichia coli TA271] gi|331677280|ref|ZP_08377962.1| putative oxidoreductase/putative repressor [Escherichia coli H591] gi|218351708|emb|CAU97423.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|300524204|gb|EFK45273.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|323170076|gb|EFZ55731.1| helix-turn-helix family protein [Escherichia coli LT-68] gi|331065391|gb|EGI37286.1| putative oxidoreductase/putative repressor [Escherichia coli TA271] gi|331075131|gb|EGI46444.1| putative oxidoreductase/putative repressor [Escherichia coli H591] Length = 178 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 12/118 (10%), Positives = 34/118 (28%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P + ++ ++ +G + + H Sbjct: 67 ISPPQPATPSVYDPQQHAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124 >gi|122879139|ref|YP_200480.6| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 461 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50 >gi|188577297|ref|YP_001914226.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521749|gb|ACD59694.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A] Length = 461 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50 >gi|220911413|ref|YP_002486722.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858291|gb|ACL38633.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 198 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 45/135 (33%), Gaps = 10/135 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R ++T + LA G+ ++ ++ + R P+ E + + A Sbjct: 12 VGPRLKALRLRRDVTLTALAAATGISVSTLSRLESGQ-----RRPNLELLLPLAQAHQVP 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +L+ P + + ++ G + P G P++ Sbjct: 67 LDELVGAPATGDPRVHLRPMTAHGMTIIPLTRKPGGVQAYKHIVPAGPVEE--PNPQVHE 124 Query: 126 PHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 125 GYEWLYVLNGKLRMV 139 >gi|163813936|ref|ZP_02205330.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] gi|158450806|gb|EDP27801.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] Length = 242 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ++ L A K G+ + +K +R +P + + I + Sbjct: 4 IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKA-----YPDLDRLVCICEILDVQ 58 Query: 69 ICQLLDLPFSDGRTTEKKEK 88 + +L+ + T E+ + Sbjct: 59 VGELVYGKGEESETPEEVSR 78 >gi|310827041|ref|YP_003959398.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] gi|308738775|gb|ADO36435.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] Length = 183 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 6/107 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ I + I R+ E L+ LAR +G+ + + +R P+ +++K Sbjct: 1 MDTM-NQIIAKNIKRLREERKLSMEELARLSGVSKSMLAQIERGEGN-----PTISTLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + L P + + E + L + F Sbjct: 55 LSNGMGVPFDALTVRPKNPYEIVKTAELQPLLEDDGRVKNYALFPDD 101 >gi|294631998|ref|ZP_06710558.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] gi|292835331|gb|EFF93680.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] Length = 509 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|293433714|ref|ZP_06662142.1| transcriptional repressor DicA [Escherichia coli B088] gi|291324533|gb|EFE63955.1| transcriptional repressor DicA [Escherichia coli B088] Length = 135 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 5/81 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + K + + I ++ L+ + L++ AG+ +S + + P +++ ++ Sbjct: 1 MNEKTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 55 Query: 64 ATNETICQLLDLPFSDGRTTE 84 + +L Sbjct: 56 VLQCSPTWILFGDEDKTPDPP 76 >gi|254390574|ref|ZP_05005789.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294815656|ref|ZP_06774299.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|326444005|ref|ZP_08218739.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704276|gb|EDY50088.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294328255|gb|EFG09898.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] Length = 509 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|254389389|ref|ZP_05004617.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294817070|ref|ZP_06775712.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445868|ref|ZP_08220602.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703104|gb|EDY48916.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321885|gb|EFG04020.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 246 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 13/156 (8%) Query: 1 MTSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++ +A + + +T + LA G+ ++ ++ + R P+ E Sbjct: 1 MDRTTDDEVLDAVGPRLRALRRDRGITLADLATTTGVSESTLSRLENGQ-----RRPTLE 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEI---PLLYFPPSGSGGFFDSGVFPTGN 113 + + N + L+ P + K + G + P Sbjct: 56 LLLPLARTYNVPLDDLVGAPRTGDPRVHLKPVSRFGITFVPLSRRPGGVHAFKMIIPARP 115 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149 P +Y + + + LP Sbjct: 116 GPLE-PAPRTHEGFEWLYVLSGRLRLVLGERDLTLP 150 >gi|46202976|ref|ZP_00208741.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 71 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT +H + + + A KAG+ + R + R + + + Sbjct: 2 MTDLTHDDVRARLSAAIREAG-SQKAFAHKAGVSAGFLSDVIRGRRDPGERVLNALDLRR 60 Query: 61 I 61 + Sbjct: 61 V 61 >gi|308272656|emb|CBX29260.1| hypothetical protein N47_J02410 [uncultured Desulfobacterium sp.] Length = 98 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + E+ L+ LA G + ++ + EG + +++ KI AT Sbjct: 39 IAELREKKGLSQRQLAELMGTSQQAISRIESGEYEG----FTLKTLEKIAEATGM 89 >gi|239625419|ref|ZP_04668450.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239519649|gb|EEQ59515.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 141 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + ++ LT LA K GL ++ K + + R ++FK+ Sbjct: 2 ELGERIRSLRKKKGLTQEELASKLGLQKSAVAKYENGRVTNIKRA----TLFKMAEILEV 57 Query: 68 TICQLLDLPFSDGRTTE 84 + +L+ G+ Sbjct: 58 SPGELMYGKEDKGQDDH 74 >gi|84623394|ref|YP_450766.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367334|dbj|BAE68492.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 461 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50 >gi|211907951|gb|ACJ12471.1| DNA binding regulatory protein [Rhodococcus sp. T104] Length = 197 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 62/180 (34%), Gaps = 12/180 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +++ + + R + L+ + LAR++GL + +K ++ P+ E++ Sbjct: 8 TNQLVARNVRRYRQERGLSLAELARRSGLSKQTLSKVEQGVGN-----PTVETLA----L 58 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + ++ + ++ ++ G V+ +G N + + Sbjct: 59 LGAALDMPARRLLTEWGSPVFVQRRDEDVWTTEDGRSERILDEVYGSGYVRNHLVRLDRG 118 Query: 125 SPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVN-CGDR-LLIKPRTGDIV 181 + G A + T H S D + L + V GD + + + D+ Sbjct: 119 ATTAGPDASEPPGTLHHVYVISGWLRTGPLTDPVTLEAGDFVRFPGDVPYVYEGLSDDVT 178 >gi|21242064|ref|NP_641646.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107469|gb|AAM36182.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 461 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50 >gi|328948203|ref|YP_004365540.1| hypothetical protein Tresu_1336 [Treponema succinifaciens DSM 2489] gi|328448527|gb|AEB14243.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 107 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + ++ + NL+ LA KAGL + N + G+ WPS +++ KI A Sbjct: 8 NRLSANLKKIRKAKNLSQFELAEKAGLSDQTINSIE-----GKRLWPSDKTMIKIANALE 62 Query: 67 ETICQL 72 Q Sbjct: 63 TDAYQF 68 >gi|198282281|ref|YP_002218602.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246802|gb|ACH82395.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 152 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 3 SFSH-KKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 H I + + ++ +R LT + L + A GL ++ ++ + G + W + ++ K Sbjct: 1 MLDHMDDIGDRVKKIRKRLGLTQAELGKHAGGLSKSAVHQWENGGT--KPAWDALTALRK 58 Query: 61 ILAATNETICQ 71 L + + Q Sbjct: 59 NLGINPDWVMQ 69 >gi|297191369|ref|ZP_06908767.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] gi|197720621|gb|EDY64529.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] Length = 509 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA G ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|168185962|ref|ZP_02620597.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] gi|169295926|gb|EDS78059.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] Length = 107 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ + LA+ AG+ P+ + + ++ PS E + K+ Sbjct: 2 LGDNIKAFRKEKGMSLNKLAKSAGMSPSYLSDLENN----KSVNPSMEKLNKLAEILEVR 57 Query: 69 ICQLLDLPFSDGRTTEKKEK 88 I + E++ K Sbjct: 58 IEDFYKEDSDEIDKLEEEMK 77 >gi|313204771|ref|YP_004043428.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444087|gb|ADQ80443.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 186 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 2/79 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E I + + L+ LA +AG++ + + + E R + I K+L Sbjct: 2 NEIGEKIKELRRKKGLSQEELAEQAGINLRTIQRIENNESE--PRGNTMHLICKVLDIHA 59 Query: 67 ETICQLLDLPFSDGRTTEK 85 E I + Sbjct: 60 EDILDYGKQTDNSFMVYFH 78 >gi|218462689|ref|ZP_03502780.1| probable transcriptional regulator protein, LacI family [Rhizobium etli Kim 5] Length = 189 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I + LT LA +G+ ++ +R P+ + + Sbjct: 1 MEQQLEQAIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I AA ++ +++++ + + V Sbjct: 56 ICAALGLSLSAFFAEEGQQASPLARRQEQQVWRDPETGYIRRSVSAPGTASDVDIVEVEF 115 Query: 121 PEIRSPHNGIYA 132 P +A Sbjct: 116 PAGARVSFPPHA 127 >gi|157160330|ref|YP_001457648.1| putative bacteriophage CI repressor protein [Escherichia coli HS] gi|157066010|gb|ABV05265.1| putative bacteriophage CI repressor protein [Escherichia coli HS] Length = 189 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 54/210 (25%), Gaps = 40/210 (19%) Query: 12 AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI+RM E + T L G+ ++ + R E + + T ++ Sbjct: 10 AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L S + E+ G R Sbjct: 63 NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDGFYIFDREFLPS 108 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + G ++ G+I + + Sbjct: 109 AFKN------LFVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 154 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ DIE I +I+ Sbjct: 155 GGRIFVEGGNRAF---ECKIEDIEIIGKII 181 >gi|82777001|ref|YP_403350.1| hypothetical protein SDY_1742 [Shigella dysenteriae Sd197] gi|81241149|gb|ABB61859.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 178 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163 >gi|302872413|ref|YP_003841049.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575272|gb|ADL43063.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 285 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E N++ S LA G+ + + R P+ +++ KI N T+ Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGH-----REPNFDTLLKIADYFNVTVDY 61 Query: 72 LLDLPFSDGRTTEKKEKE 89 L+ + ++ Sbjct: 62 LIGRSEYRTVEEQISKRS 79 >gi|58426058|gb|AAW75095.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 466 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 13 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 55 >gi|83594673|ref|YP_428425.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577587|gb|ABC24138.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 125 Score = 51.3 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 2/110 (1%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++I I + ER LT S LA G + + +R + + + + K+L Sbjct: 1 MELGQQIGRKIRTLRERRGLTQSQLASLLGKSGETISNFERGKVVTSIQT--LDQMAKVL 58 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + + +D + ++ + + + G Sbjct: 59 NVRLMDFFDGVAVGAADRQHRAERARSSHAQTVRNAADLLPEEDLEILAG 108 >gi|312884735|ref|ZP_07744436.1| hypothetical protein VIBC2010_19520 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367648|gb|EFP95199.1| hypothetical protein VIBC2010_19520 [Vibrio caribbenthicus ATCC BAA-2122] Length = 222 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 69/229 (30%), Gaps = 34/229 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++I A LT L K GL+ + + + + + + + Sbjct: 12 MKMTQGERIRSA----RNLSGLTRQQLLDKYGLNTNTLQSWELERNKLSAK--GAKKLAE 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + Q L K F T + Sbjct: 66 VFESEGLKVSQEWLLFGEGLPPQTKFFDSG---------------EEFFQTSISEDE--- 107 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKPR 176 I++ N Q D SM P++ K + I + + G +++ Sbjct: 108 -AIQNEINFFKKNNKQAIVKVVPDDSMEPVFSKHSYVGGVLIPDGCYDLYLGKYSIVETS 166 Query: 177 TGDIVAKVLIS-RRGRSIDLMSLNCCYP---VDTVEMSDIEWIARILWA 221 GD V + + ++ + +L ++N E + I +A ILW Sbjct: 167 AGDTVIRRVHRAKKPDTYNLSAINPNTESDCPVIYEAT-IVSLAPILWY 214 >gi|260664721|ref|ZP_05865573.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|260561786|gb|EEX27758.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] Length = 103 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + H+LT LA+ + PT+ + + E PS +++ K+ + N Sbjct: 2 NISSRIKYLRNEHHLTQKELAKMLNVKPTTISGWELGRNE-----PSIDTLKKLSSLFNV 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|86131733|ref|ZP_01050330.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] gi|85817555|gb|EAQ38729.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] Length = 251 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 57/223 (25%), Gaps = 17/223 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I ++ L+ A L + + E P +++ KI + I Sbjct: 5 GKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSE-----PKIDTVIKIANYFSIPI 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW----NTVGVPEIRS 125 LL + + K + N + + Sbjct: 60 DDLLTKELTVNSLLKFKADLTTDHEQITKETFATIPCITPKNTNDYLLYNDREAFVADMP 119 Query: 126 PHNGIYAIQTQDTRHKTQD---TSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTG 178 + + +S DI+I + L++ Sbjct: 120 VLQLPVNPEKDFRAFTVDNLEMSSNDKGLFPKDIVIGEHIPKNVYKKLNNGHLILAVFND 179 Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 +V + G +I L + + + +I+ + RI + Sbjct: 180 RLVLRRCY-LSGNTITLRADHKNIDDLEFPIKEIKELWRIRYV 221 >gi|293607287|ref|ZP_06689628.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814379|gb|EFF73519.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 189 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 46/158 (29%), Gaps = 18/158 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + + LA AG+ + ++ + + P+ + K+ AA Sbjct: 13 RIAHRLRALRQDRGWSLDELAGLAGVSRATLSRLENAEV-----SPTASVLGKLCAAHGM 67 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116 T+ +L+ + D + + + G + G + Sbjct: 68 TMSRLMMMVEDDFAPLVPEHAQAVWVDDSAGFRRRSVSPPAQQLAGEVLACELAPGARIA 127 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 P H+ + ++ Q + + Sbjct: 128 YDQSPRPGLEHH-LLMLEGQL-QITVDGQTYALAPGDC 163 >gi|187919965|ref|YP_001888996.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718403|gb|ACD19626.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 190 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 45/161 (27%), Gaps = 20/161 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + N + LA+ +G+ + ++ + + P+ + K+ A Sbjct: 14 RIAQRLRALRAERNWSLDELAKLSGVSRATLSRLENAAV-----SPTANVLGKLCVAYGL 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116 + +L+ + D + + G G + Sbjct: 69 PMSRLMHMVEEDFAPLVPRAAQPLWTDASVGFRRRSVSPPAQALSGEALECELDAGVQIA 128 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 P H+ I + S + GD L Sbjct: 129 YDASPRPGLEHHLILLDGE--LQITVDGQS--HGLQPGDCL 165 >gi|83590661|ref|YP_430670.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573575|gb|ABC20127.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 252 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 2/94 (2%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + + + E LT + LAR AG+ + ++ ++ + E + +L Sbjct: 134 TGGSLGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQPSLKT--LERVGAVLDI 191 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 + + +++ + S Sbjct: 192 SPCYFIADDAGVDEVLNQMSPELRQLLIEPQVQS 225 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + E + LA++AG+ + ++ +R + PS +++ K+ A N Sbjct: 5 GKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGA-----KRPSLKTLDKVARALNLPR 59 Query: 70 CQ 71 Q Sbjct: 60 EQ 61 Score = 39.7 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E I + ER + LA AG+ + ++ +R + +P+ +++ KI AA Sbjct: 74 GERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNV-----YPAIDTLKKITAALE 125 >gi|294626974|ref|ZP_06705564.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598636|gb|EFF42783.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 461 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50 >gi|294664868|ref|ZP_06730187.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605360|gb|EFF48692.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 461 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50 >gi|197285559|ref|YP_002151431.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194683046|emb|CAR43543.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 186 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 61/165 (36%), Gaps = 14/165 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I ++I R ++ L+ + +AR+AG+ ++ ++ + PS E+++ I A N Sbjct: 9 EIISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGN-----PSIETLWAICVALN 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 QL+ P + + K + + + + + P + Sbjct: 64 IPFSQLISSPKPEVKVIRKGDGFKISAEKAYYHAFLLSSCPNGAKRDIYTVIAQP-GKDR 122 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + ++ + +++ ++ +++ GD + Sbjct: 123 VSDPHSKNVTEHILIISGRAIVGTL--------DNQQELSPGDYI 159 >gi|52786374|ref|YP_092203.1| SinR [Bacillus licheniformis ATCC 14580] gi|319645045|ref|ZP_07999278.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] gi|52348876|gb|AAU41510.1| SinR [Bacillus licheniformis ATCC 14580] gi|317392854|gb|EFV73648.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] Length = 113 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + LLD + + L+ + Sbjct: 60 VHTLLDEKDETEYDGQLDSEWENLVRDAMASG 91 >gi|325927009|ref|ZP_08188283.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|325542628|gb|EGD14096.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 461 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H ++ + R+ +RH LT + LAR+ L P+ N+ +R Sbjct: 8 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50 >gi|324995381|gb|EGC27293.1| transcriptional regulator [Streptococcus sanguinis SK678] Length = 108 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LAR AG+ + + +R PS KI NE Sbjct: 41 QLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95 Query: 68 T 68 Sbjct: 96 N 96 >gi|312197902|ref|YP_004017963.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311229238|gb|ADP82093.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 197 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 2/98 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K + + R E L+ LAR++GL + +K ++ G S E+I L T Sbjct: 5 NKLVARNVRRFREERKLSLGELARRSGLSKQTLSKIEQGT--GNPTIDSIEAIADALHLT 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + P R + + Sbjct: 63 MRRLVTEWGSPLYVQRAQGAAWDGQHDDWSVRMMDQVY 100 >gi|215486344|ref|YP_002328775.1| transcriptional repressor DicA [Escherichia coli O127:H6 str. E2348/69] gi|254792795|ref|YP_003077632.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|260843554|ref|YP_003221332.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|261257017|ref|ZP_05949550.1| putative phage repressor protein CI [Escherichia coli O157:H7 str. FRIK966] gi|215264416|emb|CAS08774.1| predicted phage repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|254592195|gb|ACT71556.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|257758701|dbj|BAI30198.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|323977164|gb|EGB72251.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 135 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 5/81 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + K + + I ++ L+ + L++ AG+ +S + + P +++ ++ Sbjct: 1 MNEKTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 55 Query: 64 ATNETICQLLDLPFSDGRTTE 84 + +L Sbjct: 56 VLQCSPTWILFGDEDKTPDPP 76 >gi|218896313|ref|YP_002444724.1| transcriptional regulator SinR [Bacillus cereus G9842] gi|218541453|gb|ACK93847.1| transcriptional regulator SinR [Bacillus cereus G9842] Length = 107 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + ++ + LA KAG+ + + +R + P + + KI A Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPFIQFLEKIAAVLQIP 57 >gi|15643421|ref|NP_228465.1| hypothetical protein TM0656 [Thermotoga maritima MSB8] gi|4981179|gb|AAD35740.1|AE001739_3 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 176 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 50/185 (27%), Gaps = 20/185 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + ++ LT LA + L + ++ + PS +++ +IL A Sbjct: 2 RIGEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKT-----SPSIDTLERILEALGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + +K+E+ S + P ++ Sbjct: 57 DLKHFFSDVEEERIVFKKEERVPVYDEPEGVKSEILMSGVEDKEIDPILVTLEPGAQTEE 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + L ++ GD K K + Sbjct: 117 ESYHEGSEFGFVIQGRIDLYLDG----------KRYRLKEGDCFYYKADK-----KHYVK 161 Query: 188 RRGRS 192 G+ Sbjct: 162 NPGKK 166 >gi|330962297|gb|EGH62557.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. maculicola str. ES4326] Length = 145 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%) Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y + D + + GD+L+++ + GD ++ I + Sbjct: 43 VREPHAYLARIDDEGMRGVGMCL------GDMLVVDRSQYAEHGDIVVASLNARQI-CRR 95 Query: 185 LISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 L RG + L S N YP V + D+ + + Sbjct: 96 LY-MRGEFVVLQSENSDYPSLQVTDNDDLIILGVV 129 >gi|271969495|ref|YP_003343691.1| nner membrane protease subunit 1-like protein [Streptosporangium roseum DSM 43021] gi|270512670|gb|ACZ90948.1| nner membrane protease subunit 1-like protein [Streptosporangium roseum DSM 43021] Length = 101 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSIDL 195 R + + SMLP R GD L + V GD ++ + ++ K L Sbjct: 1 MRVRVEGDSMLPALRSGDWLWVRRGAPVRPGDLVVARLPSDPSRLIVKRAAWEADGGWWL 60 Query: 196 MSLN 199 S N Sbjct: 61 ESDN 64 >gi|260892597|ref|YP_003238694.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864738|gb|ACX51844.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 151 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I R LT + LA+K + P + K +R P E++ K Sbjct: 1 MPRKGTDDLGLRIKFARLRKGLTQAELAQKLNVHPETLGKYERGTNR-----PDAETLRK 55 Query: 61 ILAATNET 68 + + Sbjct: 56 LADILEVS 63 >gi|188585658|ref|YP_001917203.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350345|gb|ACB84615.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 89 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + L+ LA K G ++ ++ + PS E ++KI A + Sbjct: 28 DIKRQVIKLRKEKGLSQKELAEKIGTKQSAISRLENESYN-----PSIELLYKIAKACDR 82 Query: 68 TIC 70 + Sbjct: 83 DLH 85 >gi|167755494|ref|ZP_02427621.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|237733722|ref|ZP_04564203.1| predicted protein [Mollicutes bacterium D7] gi|167704433|gb|EDS19012.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|229383320|gb|EEO33411.1| predicted protein [Coprobacillus sp. D7] Length = 287 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 45/173 (26%), Gaps = 10/173 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 F + +I + R+ + NL+ LA + G+ + +K +R P T+++ + Sbjct: 11 KFMNIEIANRLVRLRKEKNLSQEALANELGISRQAVSKWERAEA-----SPDTDNLILLA 65 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVG 119 ++ LL + + ++ G + Sbjct: 66 KLYGMSLDDLLKTDQKEFESGNNQQASKEKTEEDKKQKKKESVHISLKHGIHVTGEDGEE 125 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 V + + + + + + D Sbjct: 126 VHVGWNGIHVEDPKEDSRIHIDGSGVFVDDKKYDQEEW--RKIRKEKGWDYYY 176 >gi|134503|sp|P22753|SINR_BACLI RecName: Full=HTH-type transcriptional regulator sinR gi|551703|gb|AAA22439.1| flaD (sin) homologue; putative [Bacillus licheniformis] Length = 111 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 4/92 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + LL+ + + L+ + Sbjct: 58 VHTLLNEKDETEYDGQLDSEWENLVRDAMASG 89 >gi|325299362|ref|YP_004259279.1| hypothetical protein Bacsa_2257 [Bacteroides salanitronis DSM 18170] gi|324318915|gb|ADY36806.1| hypothetical protein Bacsa_2257 [Bacteroides salanitronis DSM 18170] Length = 253 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 61/241 (25%), Gaps = 45/241 (18%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 WE I + E+ + + G+ + + R PS + KI + Sbjct: 4 WERIKFIMEKEGYNKNSFSYAIGMSNNVTITRLIN-----EKRKPSPNTCAKIAQRFPQY 58 Query: 69 ICQLL----------------------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + + + ++I F Sbjct: 59 NPEWILNGTGNMYRTETGTHIEDPNTATEKAVHQLIARNEGRQIENALFMNVPLIHVRAQ 118 Query: 107 GVFPTGNKW-NTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILN 160 + G + +P + + Y + + SM GDI++ Sbjct: 119 CGYLNGYGDKEYIESLPTLPVIVDKTY--HGNYRLFEAEGDSMDDGSRHSICDGDIVLGR 176 Query: 161 SAIQV-------NCGDRLLIKPRTGDIVAKVLISRRGRS--IDLMSLNCCYPVDTVEMSD 211 + +I RT I K +I I SLN + V + + Sbjct: 177 EVQRPLWQYKLHINDWYFIIVHRTEGISIKKIIDHDVEHGIITCHSLNNMFQDYKVPLDE 236 Query: 212 I 212 + Sbjct: 237 V 237 >gi|227356056|ref|ZP_03840447.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163833|gb|EEI48741.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 187 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 61/165 (36%), Gaps = 14/165 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I ++I R ++ L+ + +AR+AG+ ++ ++ + PS E+++ I A N Sbjct: 10 EIISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGN-----PSIETLWAICVALN 64 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 QL+ P + + K + + + + + P + Sbjct: 65 IPFSQLISSPKPEVKVIRKGDGFKISAEKAYYHAFLLSSCPNGAKRDIYTVIAQP-GKDR 123 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + ++ + +++ ++ +++ GD + Sbjct: 124 VSDPHSKNVTEHILIISGRAIVGTL--------DNQQELSPGDYI 160 >gi|153955926|ref|YP_001396691.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856268|ref|YP_002473390.1| hypothetical protein CKR_2925 [Clostridium kluyveri NBRC 12016] gi|146348784|gb|EDK35320.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569992|dbj|BAH07976.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 200 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + HN++ + LA K G+ + +K + +R P TE++ + + N + Sbjct: 69 MNRLSLLRKSHNMSQAELAEKLGVTQQTISKYENG-----SREPDTETLKLLSSIFNVS 122 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 39/153 (25%), Gaps = 14/153 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ N+T LA+ + ++ ++ R P E++ I + Sbjct: 3 GEKLKKLRMDKNMTQQELAKILKISSSTIGMYEQN-----RRSPDIETLKLIADYFQCST 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 LL + ++ + + G + N R P Sbjct: 58 DYLLGKNDIENMNRLSLLRKSHNMSQAELAEKLGVTQQTISKYENG--------SREPDT 109 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 + + R D + Sbjct: 110 ETLKLLSSIFNVSIDYLLGATNIRNHDTTYITP 142 >gi|270297085|ref|ZP_06203284.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273072|gb|EFA18935.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 219 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 50/206 (24%), Gaps = 23/206 (11%) Query: 23 TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 + A+ G+ + + R + I L Sbjct: 18 NKAKFAQLLGVSAQTISAW-------GTRNTFDSEL--IYTKCIGLSPDWLLTGEGAMLR 68 Query: 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIYAIQTQDTR 139 T PL G + + F G ++ + +P+ + + Sbjct: 69 TNDVSTSEPLPSINQEYKGAPYYNVDFIGGFEFVSNDQTQLPDYYINYPPY--NKPGVMW 126 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIVAKVLISRRGRS-IDL 195 SM P GD++ L + K + + + L Sbjct: 127 CNLTGHSMEPEISNGDVIALKEVRSPIEYLPAGEIYGIITDDYRTVKRIRPGAQKGFVRL 186 Query: 196 MSLN--CCYPVDTVEMSDIEWIARIL 219 + N + + +E I R+ Sbjct: 187 IPANKSPEFCEQEIP---VEMIRRVF 209 >gi|257878016|ref|ZP_05657669.1| peptidase S24 [Enterococcus faecium 1,230,933] gi|257881198|ref|ZP_05660851.1| peptidase S24 [Enterococcus faecium 1,231,502] gi|257884861|ref|ZP_05664514.1| peptidase S24 [Enterococcus faecium 1,231,501] gi|257889785|ref|ZP_05669438.1| peptidase S24 [Enterococcus faecium 1,231,410] gi|257892278|ref|ZP_05671931.1| peptidase S24 [Enterococcus faecium 1,231,408] gi|258616495|ref|ZP_05714265.1| signal peptidase I [Enterococcus faecium DO] gi|260559066|ref|ZP_05831252.1| peptidase S24 [Enterococcus faecium C68] gi|261207600|ref|ZP_05922285.1| peptidase S24 [Enterococcus faecium TC 6] gi|289565112|ref|ZP_06445565.1| signal peptidase I [Enterococcus faecium D344SRF] gi|293563417|ref|ZP_06677866.1| signal peptidase I [Enterococcus faecium E1162] gi|293568075|ref|ZP_06679413.1| signal peptidase I [Enterococcus faecium E1071] gi|294614826|ref|ZP_06694721.1| signal peptidase I [Enterococcus faecium E1636] gi|294617505|ref|ZP_06697136.1| signal peptidase I [Enterococcus faecium E1679] gi|294622298|ref|ZP_06701341.1| signal peptidase I [Enterococcus faecium U0317] gi|257812244|gb|EEV41002.1| peptidase S24 [Enterococcus faecium 1,230,933] gi|257816856|gb|EEV44184.1| peptidase S24 [Enterococcus faecium 1,231,502] gi|257820699|gb|EEV47847.1| peptidase S24 [Enterococcus faecium 1,231,501] gi|257826145|gb|EEV52771.1| peptidase S24 [Enterococcus faecium 1,231,410] gi|257828657|gb|EEV55264.1| peptidase S24 [Enterococcus faecium 1,231,408] gi|260074823|gb|EEW63139.1| peptidase S24 [Enterococcus faecium C68] gi|260077983|gb|EEW65689.1| peptidase S24 [Enterococcus faecium TC 6] gi|289163119|gb|EFD10966.1| signal peptidase I [Enterococcus faecium D344SRF] gi|291589296|gb|EFF21106.1| signal peptidase I [Enterococcus faecium E1071] gi|291592288|gb|EFF23902.1| signal peptidase I [Enterococcus faecium E1636] gi|291596245|gb|EFF27507.1| signal peptidase I [Enterococcus faecium E1679] gi|291598190|gb|EFF29288.1| signal peptidase I [Enterococcus faecium U0317] gi|291604678|gb|EFF34163.1| signal peptidase I [Enterococcus faecium E1162] Length = 183 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/104 (9%), Positives = 36/104 (34%), Gaps = 13/104 (12%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + + ++ + SM + ++GD++++ ++ D ++ + Sbjct: 12 WLVFKYLLVSVFLAFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQL 71 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I K +I G + + ++ +++ Sbjct: 72 ADGTIYIKRVIGLPG------------ENVSYQNDQLKINGKVV 103 >gi|312792346|ref|YP_004025269.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179486|gb|ADQ39656.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 274 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E N++ S LA G+ + + R P+ +++ KI + T+ Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGH-----REPNFDTLLKIAEYFDVTVDY 61 Query: 72 LLDLPFSDGRTTEKKEKE 89 L+ + ++ Sbjct: 62 LVGRSDYRTVEEQISKRS 79 >gi|254390836|ref|ZP_05006047.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326444447|ref|ZP_08219181.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704534|gb|EDY50346.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 199 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/85 (11%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + + ++ + +A G+ ++ ++ + R PS E + I A Sbjct: 12 DEVGPRLRWLRTQRGVSLTAIAEATGISKSTLSRLESGQ-----RRPSLELLLPIAQAHQ 66 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIP 91 + +L+ P + + Sbjct: 67 VPLDELVGAPEVGDPRIRTSPRSVN 91 >gi|167628808|ref|YP_001679307.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] gi|167591548|gb|ABZ83296.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] Length = 119 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I + ++ LT LA+ + P + +R S + + IL T Sbjct: 2 DSIGNRIKHLRKQRGLTQPQLAKLLNVSPQVISNWERG-YTPTIAPESIDKLASILETT 59 >gi|148927479|ref|ZP_01810979.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] gi|147887175|gb|EDK72643.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] Length = 528 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +KI + I + T + +A+ G ++ N+ + G S E + + Sbjct: 21 MEPLYKQKIGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQN-----LSMEMLAR 75 Query: 61 ILAATN 66 I N Sbjct: 76 ISDVLN 81 >gi|148927476|ref|ZP_01810976.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] gi|147887172|gb|EDK72640.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] Length = 92 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +KI + I + T + +A+ G ++ N+ + G S E + + Sbjct: 1 MEPLYKQKIGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQN-----LSMEMLAR 55 Query: 61 ILAATN 66 I N Sbjct: 56 ISDVLN 61 >gi|254384685|ref|ZP_05000024.1| signal peptidase [Streptomyces sp. Mg1] gi|194343569|gb|EDX24535.1| signal peptidase [Streptomyces sp. Mg1] Length = 139 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLM 196 + SM+P GD L++ V GD ++++ +V K + RR ++ Sbjct: 13 VFEVTGPSMVPTLLHGDRLVVRHGKAVRPGDVVVLRHPFQQDLLVVKRAVERRPGGWWVL 72 Query: 197 SLNC 200 N Sbjct: 73 GDNP 76 >gi|163789213|ref|ZP_02183655.1| transcriptional regulator [Flavobacteriales bacterium ALC-1] gi|159875428|gb|EDP69490.1| transcriptional regulator [Flavobacteriales bacterium ALC-1] Length = 195 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 55/191 (28%), Gaps = 14/191 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG----RNRWPSTESIFKIL 62 + I E I + +L +++ G+ T+ + + + P + + I+ Sbjct: 2 EGIDEKISAIINHFHLNNFSFSKRIGVTGTTVDSIVNGRPQADGSRKKTKPGYDVLNAII 61 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTG------NKW 115 N L ++ K + + G + P + + Sbjct: 62 DTFNVNPDFLFSKSTIMLKSDVVKGQTYSGMPQVIAVNQTGDENVVYVPVKARAGYLDGY 121 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLL 172 E N + + + SM+ + GD++ + + G + Sbjct: 122 GDPEYIETLPSFNMPHLTNGTYRCFEVKGNSMVRTFFDGDLVFGKYVEDLNDIKDGRIYV 181 Query: 173 IKPRTGDIVAK 183 I + I K Sbjct: 182 IVSKNDGISIK 192 >gi|126699176|ref|YP_001088073.1| putative transcriptional regulator [Clostridium difficile 630] gi|115250613|emb|CAJ68437.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 404 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI + I R+ + NLT LA+ G+ + +K + +P E + + Sbjct: 2 QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56 Query: 66 NET 68 N + Sbjct: 57 NVS 59 >gi|317488752|ref|ZP_07947286.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] gi|316912122|gb|EFV33697.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] Length = 112 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 11/74 (14%) Query: 1 MTSFSHK------KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M+ S K +I + + M + LA + GL + +K +R P Sbjct: 1 MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAES-----SPD 55 Query: 55 TESIFKILAATNET 68 T ++ + + Sbjct: 56 TGNLIALAKLYGVS 69 >gi|218289581|ref|ZP_03493801.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|258511692|ref|YP_003185126.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240231|gb|EED07414.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|257478418|gb|ACV58737.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 145 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 11/102 (10%), Positives = 26/102 (25%), Gaps = 5/102 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + + LA +AG+ + +R R PS + ++ A + Sbjct: 6 GARVRAIRQSRGWSQQELAMRAGVSTPHISSIERD-----KRRPSLDYAKRLADALGVPL 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 L D + + + Sbjct: 61 QVLCDPEMTYEPKRMRNSVYELPTPLQHFVLNEESFPYLEAA 102 >gi|1174332|emb|CAA64677.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens] Length = 182 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + RHN++ LAR+AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 59 GLAEFFAFEPETSRKAF 75 >gi|302559931|ref|ZP_07312273.1| PbsX family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302477549|gb|EFL40642.1| PbsX family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 165 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 42/166 (25%), Gaps = 9/166 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 7 MASLNVGNLGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A + L ++ E E + + + + Sbjct: 62 VAKALRISAETLYVRAGILDAERDRDEVETRAVVLADPTLTERQKQVLL---QIYESFRK 118 Query: 121 PEIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQV 165 + A S P R D + Sbjct: 119 ENGFAGAEDGQATPGGAPAPGAVDAPSAEPRPRVVDGSDTDPRRTA 164 >gi|90592580|ref|YP_529840.1| putative CI-like repressor [Lactobacillus phage KC5a] gi|89891909|gb|ABD78782.1| putative CI-like repressor [Lactobacillus phage KC5a] Length = 74 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + LT + LA++ G+ + ++ +R + ++ +++ K+ + I Sbjct: 5 LKSLRVGAGLTQAELAKRLGVTNVTVSRWERGETIPKPKY--IKAMAKLFNIKGQDIF 60 >gi|91778751|ref|YP_553959.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691411|gb|ABE34609.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 190 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 44/161 (27%), Gaps = 20/161 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + N + LAR +G+ + ++ + + P+ + K+ A Sbjct: 14 RIAQRLRALRAERNWSLDDLARLSGVSRATLSRLENAAV-----SPTASVLGKLCVAYGL 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116 + +L+ + D + + G G + Sbjct: 69 PMSRLMHMVEEDFAPLVPRAAQPLWTDASVGFRRRSVSPPARALSGEALECELDAGVRIT 128 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 P H+ I + + GD L Sbjct: 129 YDASPRPGLEHHLILLEGE----LRISVDGQSHDLQPGDCL 165 >gi|26989603|ref|NP_745028.1| XRE family transcriptional regulator [Pseudomonas putida KT2440] gi|148548020|ref|YP_001268122.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|167033897|ref|YP_001669128.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|325276264|ref|ZP_08142055.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|24984484|gb|AAN68492.1|AE016481_8 transcriptional regulator, putative [Pseudomonas putida KT2440] gi|148512078|gb|ABQ78938.1| transcriptional regulator, XRE family [Pseudomonas putida F1] gi|166860385|gb|ABY98792.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] gi|298682210|gb|ADI95276.1| XRE family transcriptional regulator [Pseudomonas putida] gi|313499097|gb|ADR60463.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] gi|324098604|gb|EGB96659.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 181 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 23/193 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ER+NL+ LAR++GL ++ ++ ++ + PS S+ K+L ++ Sbjct: 4 GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRV-----SPSVSSLKKLLEGIPMSL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + +E + G + G Sbjct: 59 AEFFSFDE-------PVREERYVFRGGEQPDLGRNGLRMLLVGASVEG----RQMRMLRE 107 Query: 130 IYAIQTQDTRHKTQDTSMLPLY--RKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLI 186 +YA R L ++ + V GD I Sbjct: 108 LYAPGADSGEPIVHAEGEECGLVTRGTVELWVDGQVSVLNSGDGYYIPTTLPHS----FK 163 Query: 187 SRRGRSIDLMSLN 199 + +++S N Sbjct: 164 NIGPDEAEIISAN 176 >gi|260855310|ref|YP_003229201.1| putative phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|260868064|ref|YP_003234466.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|293405073|ref|ZP_06649065.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298380719|ref|ZP_06990318.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|331652950|ref|ZP_08353955.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331683077|ref|ZP_08383678.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] gi|257753959|dbj|BAI25461.1| predicted phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|257764420|dbj|BAI35915.1| predicted phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|291427281|gb|EFF00308.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298278161|gb|EFI19675.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|320646852|gb|EFX15716.1| transcriptional repressor DicA [Escherichia coli O157:H- str. 493-89] gi|320663403|gb|EFX30700.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. USDA 5905] gi|331049048|gb|EGI21120.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331079292|gb|EGI50489.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] Length = 135 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + K + + I ++ L+ +GL++ AG+ +S + + P +++ ++ Sbjct: 1 MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 55 Query: 64 ATNETICQLLDLPFSDGRTTE 84 + +L Sbjct: 56 VLQCSPTWILFGDEDKTPAPP 76 >gi|210612788|ref|ZP_03289482.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|314950371|ref|ZP_07853647.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|317501730|ref|ZP_07959917.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319937809|ref|ZP_08012211.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] gi|210151402|gb|EEA82410.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|313643322|gb|EFS07902.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|316896852|gb|EFV18936.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319807039|gb|EFW03655.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] Length = 223 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA K G++ S +K +R +P+ +++ KI+ T Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65 Query: 69 ICQLLDLPFSDGRTTEK 85 +LL + TE Sbjct: 66 PNELLSGEWKYIDHTEP 82 >gi|163784885|ref|ZP_02179654.1| hypothetical protein HG1285_00035 [Hydrogenivirga sp. 128-5-R1-1] gi|159879846|gb|EDP73581.1| hypothetical protein HG1285_00035 [Hydrogenivirga sp. 128-5-R1-1] Length = 128 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 I + ++ LT A+ G+ T+ N+ + E R + E++ K+ Sbjct: 6 IRELRKKLGLTQEEFAQLLGVGFTTVNRWENGKSE--PRGQALEALEKL 52 >gi|218290563|ref|ZP_03494672.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239466|gb|EED06662.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 205 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 3/87 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + E+ ++ LA G+ +S + + R P E + KI T Sbjct: 5 DRLKTLREQRGISQERLAEILGIPRSSIAHYESPEND---RLPRPERLKKIADFFGVTTD 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97 L+ + + Sbjct: 62 YLIGRTNDPHGHAIVNFADSEPIVTAE 88 >gi|291521013|emb|CBK79306.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 345 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 5/90 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + +T +A + G+ + NK + + P E + I + Sbjct: 2 DIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSK-----PDIELLAPIARLLDI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 ++ LL + T ++ F Sbjct: 57 SLDTLLSFHENLSDTEIEEIIRKMDRMFSE 86 >gi|330825988|ref|YP_004389291.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329311360|gb|AEB85775.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 117 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 11/77 (14%) Query: 1 MTSFSH------KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M H +++ I + + T + LA + G++P + ++ +R PS Sbjct: 1 MVKKKHPGKPLAQRLGTQIATLRKTKEWTQADLAERIGVEPETISRVERGATT-----PS 55 Query: 55 TESIFKILAATNETICQ 71 +++ KI I + Sbjct: 56 LQTLEKISHCLRVRIGE 72 >gi|289769674|ref|ZP_06529052.1| transcriptional regulator [Streptomyces lividans TK24] gi|289699873|gb|EFD67302.1| transcriptional regulator [Streptomyces lividans TK24] Length = 208 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 7/139 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MTS + + + LT + LA G+ ++ ++ + E R + Sbjct: 18 MTSL-----GARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAH 72 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L + D T + +PL P G + P + Sbjct: 73 RLPLDELVGSRTGDPRVHPRPFTRHGQTWVPLTRNPNDGLHAYKQILPAPATPRTEWTPR 132 Query: 121 PE--IRSPHNGIYAIQTQD 137 PE H +Y + + Sbjct: 133 PEQGSHEGHEWLYVLSGRL 151 >gi|134298752|ref|YP_001112248.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051452|gb|ABO49423.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + L+ + L+R++G+ +S + + R P+ + I +I + Sbjct: 2 DIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQ-----RQPTFDVIERICSGLGL 56 Query: 68 TICQLLDLPFSDGR 81 ++ + + F Sbjct: 57 SVAEFFNEGFMPCP 70 >gi|311111466|ref|ZP_07712863.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066620|gb|EFQ46960.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 116 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 5/97 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H L+ + L++ + + K + E PS+ ++ K+ + + Sbjct: 2 IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAE-----PSSGALAKLAEYFDVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 LL + + EK + L + Sbjct: 57 ADYLLGSDKTSEPKSVDLEKTLSFLAMVDALCQMKTW 93 >gi|283780906|ref|YP_003371661.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283439359|gb|ADB17801.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068] Length = 183 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 13/165 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I M LT LA K G+ +K + F + PS ++ KI A Sbjct: 5 QLSQRIREMRTSAGLTLEELAEKTGMTRGVISKIENFRVT-----PSLPTLAKIAEAFGV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + LL + +++E + S F + + + Sbjct: 60 STADLLAGLDQRPQIVVVRKEERQEITRDGSAIRYFALAHKRAIKLMEPMLLEIQPGKGR 119 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + A + ++ T + + ++ GD + Sbjct: 120 DEKLAHEGEEFVMVVDGTIEYE--------YGDESYRLEPGDCIY 156 >gi|86157573|ref|YP_464358.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|197121618|ref|YP_002133569.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220916382|ref|YP_002491686.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|85774084|gb|ABC80921.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] gi|196171467|gb|ACG72440.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219954236|gb|ACL64620.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 69 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + R+ + NL+ LA K G+ + + +R R P E+I K Sbjct: 1 MDLLT--RFAGNVRRLRSKKNLSQKALADKVGISVSYVSMLERGQ-----RSPPLETIEK 53 Query: 61 ILAATNETI 69 + A Sbjct: 54 MAKALGVPP 62 >gi|291549706|emb|CBL25968.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 345 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 5/90 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + +T +A + G+ + NK + + P E + I + Sbjct: 2 DIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSK-----PDIELLAPIARLLDI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 ++ LL T ++ F Sbjct: 57 SLDTLLSFHEKLSDTEIEEIIRKMDRMFSE 86 >gi|21223122|ref|NP_628901.1| hypothetical protein SCO4743 [Streptomyces coelicolor A3(2)] gi|3449255|emb|CAA20399.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 201 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 7/139 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MTS + + + LT + LA G+ ++ ++ + E R + Sbjct: 11 MTSL-----GARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAH 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L + D T + +PL P G + P + Sbjct: 66 RLPLDELVGSRTGDPRVHPRPFTRHGQTWVPLTRNPNDGLHAYKQILPAPATPRTEWTPR 125 Query: 121 PE--IRSPHNGIYAIQTQD 137 PE H +Y + + Sbjct: 126 PEQGSHEGHEWLYVLSGRL 144 >gi|209918706|ref|YP_002292790.1| hypothetical protein ECSE_1515 [Escherichia coli SE11] gi|209911965|dbj|BAG77039.1| conserved hypothetical protein [Escherichia coli SE11] gi|324021052|gb|EGB90271.1| helix-turn-helix protein [Escherichia coli MS 117-3] Length = 178 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P S + +++ ++ +G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124 >gi|170680755|ref|YP_001743794.1| DNA-binding protein [Escherichia coli SMS-3-5] gi|170518473|gb|ACB16651.1| DNA-binding protein [Escherichia coli SMS-3-5] Length = 178 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P S + +++ ++ +G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124 >gi|71736787|ref|YP_274675.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557340|gb|AAZ36551.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 203 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 55/211 (26%), Gaps = 43/211 (20%) Query: 4 FSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 SHK I + + E + L+ LAR++G+ + + ++ + PS S+ K Sbjct: 16 LSHKAIMDTGARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKK 70 Query: 61 ILAATNETICQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGV 108 +L T+ G+ + + + PS F Sbjct: 71 LLEGIPMTLADFFTFDQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQY 130 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 P ++ P + S + + G Sbjct: 131 AP---GADSGEEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PG 171 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 D + +++S N Sbjct: 172 DGYYFPTTLPH----RFRNIGQDEAEIISSN 198 >gi|16129393|ref|NP_415951.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|89108277|ref|AP_002057.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|157157044|ref|YP_001462706.1| DNA-binding protein [Escherichia coli E24377A] gi|157160911|ref|YP_001458229.1| DNA-binding protein [Escherichia coli HS] gi|170020236|ref|YP_001725190.1| XRE family transcriptional regulator [Escherichia coli ATCC 8739] gi|170081108|ref|YP_001730428.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|191164983|ref|ZP_03026827.1| DNA-binding protein [Escherichia coli B7A] gi|193066983|ref|ZP_03047952.1| DNA-binding protein [Escherichia coli E110019] gi|194436585|ref|ZP_03068686.1| DNA-binding protein [Escherichia coli 101-1] gi|238900660|ref|YP_002926456.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253773591|ref|YP_003036422.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161493|ref|YP_003044601.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|256022888|ref|ZP_05436753.1| predicted DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|260855159|ref|YP_003229050.1| putative DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|260867878|ref|YP_003234280.1| putative DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|293433816|ref|ZP_06662244.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088] gi|297521909|ref|ZP_06940295.1| putative DNA-binding transcriptional regulator [Escherichia coli OP50] gi|300921799|ref|ZP_07137960.1| helix-turn-helix protein [Escherichia coli MS 182-1] gi|300928985|ref|ZP_07144486.1| helix-turn-helix protein [Escherichia coli MS 187-1] gi|300948113|ref|ZP_07162247.1| helix-turn-helix protein [Escherichia coli MS 116-1] gi|300958230|ref|ZP_07170381.1| helix-turn-helix protein [Escherichia coli MS 175-1] gi|301020147|ref|ZP_07184274.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|301326006|ref|ZP_07219420.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|301645375|ref|ZP_07245319.1| helix-turn-helix protein [Escherichia coli MS 146-1] gi|307138086|ref|ZP_07497442.1| putative DNA-binding transcriptional regulator [Escherichia coli H736] gi|307309783|ref|ZP_07589433.1| transcriptional regulator, XRE family [Escherichia coli W] gi|309794168|ref|ZP_07688592.1| helix-turn-helix protein [Escherichia coli MS 145-7] gi|312971601|ref|ZP_07785776.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|331642010|ref|ZP_08343145.1| putative oxidoreductase/putative repressor [Escherichia coli H736] gi|2829660|sp|P77626|YDCN_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator ydcN gi|1742340|dbj|BAA15062.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|1787704|gb|AAC74516.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|157066591|gb|ABV05846.1| DNA-binding protein [Escherichia coli HS] gi|157079074|gb|ABV18782.1| DNA-binding protein [Escherichia coli E24377A] gi|169755164|gb|ACA77863.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169888943|gb|ACB02650.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|190904755|gb|EDV64460.1| DNA-binding protein [Escherichia coli B7A] gi|192959573|gb|EDV90007.1| DNA-binding protein [Escherichia coli E110019] gi|194424617|gb|EDX40603.1| DNA-binding protein [Escherichia coli 101-1] gi|238862307|gb|ACR64305.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242377187|emb|CAQ31919.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|253324635|gb|ACT29237.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973394|gb|ACT39065.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977605|gb|ACT43275.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|257753808|dbj|BAI25310.1| predicted DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|257764234|dbj|BAI35729.1| predicted DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|260449440|gb|ACX39862.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|291324635|gb|EFE64057.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088] gi|299881904|gb|EFI90115.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|300315108|gb|EFJ64892.1| helix-turn-helix protein [Escherichia coli MS 175-1] gi|300421824|gb|EFK05135.1| helix-turn-helix protein [Escherichia coli MS 182-1] gi|300452356|gb|EFK15976.1| helix-turn-helix protein [Escherichia coli MS 116-1] gi|300463050|gb|EFK26543.1| helix-turn-helix protein [Escherichia coli MS 187-1] gi|300847223|gb|EFK74983.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|301076329|gb|EFK91135.1| helix-turn-helix protein [Escherichia coli MS 146-1] gi|306909501|gb|EFN39995.1| transcriptional regulator, XRE family [Escherichia coli W] gi|308122073|gb|EFO59335.1| helix-turn-helix protein [Escherichia coli MS 145-7] gi|310336198|gb|EFQ01398.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|315060712|gb|ADT75039.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|315136074|dbj|BAJ43233.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] gi|315619613|gb|EFV00138.1| helix-turn-helix family protein [Escherichia coli 3431] gi|320187371|gb|EFW62064.1| Transcriptional regulator yidN, Cro/CI family [Shigella flexneri CDC 796-83] gi|320199440|gb|EFW74031.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli EC4100B] gi|323157392|gb|EFZ43506.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|323178085|gb|EFZ63664.1| helix-turn-helix family protein [Escherichia coli 1180] gi|323185431|gb|EFZ70792.1| helix-turn-helix family protein [Escherichia coli 1357] gi|323378722|gb|ADX50990.1| transcriptional regulator, XRE family [Escherichia coli KO11] gi|323942192|gb|EGB38365.1| helix-turn-helix protein [Escherichia coli E482] gi|323947787|gb|EGB43789.1| helix-turn-helix protein [Escherichia coli H120] gi|323962367|gb|EGB57953.1| helix-turn-helix protein [Escherichia coli H489] gi|323973651|gb|EGB68830.1| helix-turn-helix protein [Escherichia coli TA007] gi|324117665|gb|EGC11569.1| helix-turn-helix protein [Escherichia coli E1167] gi|331038808|gb|EGI11028.1| putative oxidoreductase/putative repressor [Escherichia coli H736] gi|332343099|gb|AEE56433.1| helix-turn-helix family protein YdcN [Escherichia coli UMNK88] Length = 178 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P S + +++ ++ +G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124 >gi|160896156|ref|YP_001561738.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361740|gb|ABX33353.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 104 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 4/81 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I +T LA AG+ ++ ++ + G R +++ ++ A T Sbjct: 4 IGERIRARRAELGMTQGRLAEAAGITASAVSQIE----SGAIRTLKNDTLARVALALQTT 59 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 +L D E+ Sbjct: 60 ALELTAGLEDDNAPLPVDEQR 80 >gi|310827449|ref|YP_003959806.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] gi|308739183|gb|ADO36843.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] Length = 67 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 8/63 (12%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I E I E NL S LA KAG+ + N + R P +I KI Sbjct: 1 MMT---IGEIIRTAREEKNLNQSQLAAKAGISQATVNYLETG-----KRNPGFTTIVKIA 52 Query: 63 AAT 65 Sbjct: 53 KVL 55 >gi|261819878|ref|YP_003257984.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603891|gb|ACX86377.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 103 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + ++I E++ R + L+ ++G+ + +K + G++ R S ++ + Sbjct: 1 MSYVT-EQILESLREARARKGFSQRELSARSGVPQSHISKIESGGVD--LRVSSLIALAR 57 Query: 61 ILA 63 +L Sbjct: 58 VLD 60 >gi|209550040|ref|YP_002281957.1| peptidase S24 and S26 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535796|gb|ACI55731.1| peptidase S24 and S26 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 69/233 (29%), Gaps = 29/233 (12%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + R E +P+ A P NK+ E NR S ++ + Sbjct: 6 DRLKRAREAAGFQSPTDAANAF---PRDINKNTLISNENGNRAISKKAAERYGELFGVKA 62 Query: 70 CQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +G E + L G ++G F ++++ E+ P + Sbjct: 63 GWILFGDNAEEGAAPVVSELTLNRLGMVAGRVAGVVEAGTFREVDEFDQSDPVEVMLPRD 122 Query: 129 GIYAIQTQDTRHKTQDTSMLP----LYRKGDILI------LNSAIQVNCGDRLLIKPRTG 178 + Q SM GD L+ + +++ G ++++ Sbjct: 123 EKFPNARQLV-FDCSGDSMNDLRPRPIFPGDRLVCLSYEDIEHQVELRSGMVVVVERTRD 181 Query: 179 -----DIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMS-------DIEWIARI 218 + K L R S N + ++ ++ IA + Sbjct: 182 GGHFREWSVKQLELFPDRAEFHPRSTNPKHKPIVIQRDHEADDGVSVQVIALV 234 >gi|254465332|ref|ZP_05078743.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206686240|gb|EDZ46722.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 287 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + ++R L+ S LAR G+D ++ ++ + R P+ + A Sbjct: 12 EQFRQRLNRALSESGLSQSALARAVGVDRSTISQLL---TDEGARLPNAHVVGACAGALG 68 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + LL L E + L P + Sbjct: 69 VSADWLLSLSDRPESAAELLASSLSLSEAPRALVDERIFDWHQEAEG 115 >gi|160933713|ref|ZP_02081101.1| hypothetical protein CLOLEP_02574 [Clostridium leptum DSM 753] gi|156867590|gb|EDO60962.1| hypothetical protein CLOLEP_02574 [Clostridium leptum DSM 753] Length = 102 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + I R+ N T LA+K+GL ++ + R + + PS +++ KI Sbjct: 2 KDILKEITRLRLERNWTEYELAKKSGLAQSTISSWYR-----KKQTPSIQTLDKICKGFG 56 Query: 67 ETICQLL 73 T+ Q Sbjct: 57 ITLSQFF 63 >gi|307129154|ref|YP_003881170.1| transcriptional regulator [Dickeya dadantii 3937] gi|306526683|gb|ADM96613.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 195 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 48/146 (32%), Gaps = 17/146 (11%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + +++ + + + LA+ +G+ + ++ +R P+ + ++ A Sbjct: 14 TDRRLAGRLAALRRERGWSLDELAQNSGISRATLSRLERMES-----SPTAALLGRLCAV 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLY-----------FPPSGSGGFFDSGVFPTGN 113 T+ LL + ++ + P +G G P G Sbjct: 69 YGCTMSCLLAEVETQLPQKLSAAQQPVWIDPETGFVRRSISPPSAGFRAEMIHGELPAGA 128 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTR 139 + + P + + +Y ++ Q Sbjct: 129 RIDY-SAPPLAGLEHHLYVLEGQLVM 153 >gi|294495785|ref|YP_003542278.1| XRE family transcriptional regulator [Methanohalophilus mahii DSM 5219] gi|292666784|gb|ADE36633.1| transcriptional regulator, XRE family [Methanohalophilus mahii DSM 5219] Length = 185 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 10/111 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + LT SGLA++AG+ + + ++ P ++ KI AA +++ + Sbjct: 9 IKQQRIELGLTQSGLAKRAGVSQPLIARIEAGDVD-----PRLSTLRKIFAAFDQSEKEK 63 Query: 73 LDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + ++++ + S P G+ + Sbjct: 64 ICVRDIMHTLVVFVSSDESVDHAVSIMQEHGYSQVPVIDNGVPVGSISEDM 114 >gi|284006686|emb|CBA71947.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 133 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 6/105 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ + S LAR+ G+ P S + I P + + K+ T +T+ Sbjct: 9 KRLQQVLDELGWNQSELARRMGVKPQSVQGWLKNVI------PRMDKLKKLSEVTGKTVD 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++ + + P + Sbjct: 63 WFFSDKLTNQENKSHEIFSMKKNTLTEKQKLILQLFESLPESDVD 107 >gi|193062540|ref|ZP_03043634.1| DNA-binding protein [Escherichia coli E22] gi|260843745|ref|YP_003221523.1| putative DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|192931662|gb|EDV84262.1| DNA-binding protein [Escherichia coli E22] gi|257758892|dbj|BAI30389.1| predicted DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|323163586|gb|EFZ49411.1| helix-turn-helix family protein [Escherichia coli E128010] Length = 178 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/118 (10%), Positives = 33/118 (27%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P + ++ ++ G + + H Sbjct: 67 ISPPQPATPSVYDPQQHAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124 >gi|116629238|ref|YP_814410.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116629298|ref|YP_814470.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116094820|gb|ABJ59972.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|116094880|gb|ABJ60032.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] Length = 74 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + LT + LA++ G+ + ++ +R + ++ +++ K+ + I Sbjct: 5 LKSLRVGAGLTQTELAKRLGVTNVTVSRWERGEAIPKPKY--IKAMAKLFNIKGQDIF 60 >gi|311111418|ref|ZP_07712815.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri MV-22] gi|311111467|ref|ZP_07712864.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri MV-22] gi|311066572|gb|EFQ46912.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri MV-22] gi|311066621|gb|EFQ46961.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri MV-22] Length = 75 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + LT + LA++ G+ + ++ +R + ++ +++ K+ + I Sbjct: 5 LKSLRVGAGLTQAELAKRLGVTNVTVSRWERGEAVPKPKY--IKAMAKLFNIKGQDIF 60 >gi|296133125|ref|YP_003640372.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296031703|gb|ADG82471.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 89 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I R+ L+ LA K G ++ ++ + PS E + KI A Sbjct: 28 NIKREIIRLRLEQGLSQKDLADKVGTKQSAISRLESGEYN-----PSVEFLTKIAHALG 81 >gi|260597879|ref|YP_003210450.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] gi|260217056|emb|CBA30782.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] Length = 191 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 47/170 (27%), Gaps = 23/170 (13%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I E I E + S LA +AG+ +K +R P+ + ++ A Sbjct: 9 NQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAL 63 Query: 66 NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 ++ L+ + + + + L S D + Sbjct: 64 GLSMSTLIARAEMNEGRLLRFADQPVWRDPQSHYLRRHVSPKSDLPLDLVQVELPAGSD- 122 Query: 118 VGVPE---------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 + +P I + + + + + I Sbjct: 123 IPMPASAYAFARQLIWVQQGELVFREGETRHLMREGDCLELGPPNECHFI 172 >gi|332716117|ref|YP_004443583.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] gi|325062802|gb|ADY66492.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] Length = 182 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + RHN++ LAR+AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 59 GLAEFFAYEPETSRKAF 75 >gi|209551825|ref|YP_002283742.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537581|gb|ACI57516.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 189 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 5/132 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I ++ LT LA +G+ ++ +R P+ + + Sbjct: 1 MEEQLEQAIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I AA ++ +++++ + + V Sbjct: 56 ICAALGLSLSAFFAEEGEQAAPLARRQEQQVWRDPETGYLRRSVSAPGTASDVDIVEVEF 115 Query: 121 PEIRSPHNGIYA 132 P +A Sbjct: 116 PAGARVSFPPHA 127 >gi|325955461|ref|YP_004239121.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC [Weeksella virosa DSM 16922] gi|323438079|gb|ADX68543.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC [Weeksella virosa DSM 16922] Length = 154 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 4/99 (4%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 E S + + SM P Y+ D+L+ S Q+ GD ++ D Sbjct: 47 ERISLDERFLSKPESTFLVRVGGLSMYPHYQMNDVLVNRSDYQLMHGDDAVVSINNSDFT 106 Query: 182 AKVLISRRGRSIDLMSLNCCYPV-DTVEMSDIEWIARIL 219 K +LN + ++ D+ ++ Sbjct: 107 LKR---WDANKKMFYALNPDFKDSLIIQPEDVVVCLGVV 142 >gi|256785782|ref|ZP_05524213.1| hypothetical protein SlivT_14926 [Streptomyces lividans TK24] Length = 202 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 7/139 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MTS + + + LT + LA G+ ++ ++ + E R + Sbjct: 12 MTSL-----GARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAH 66 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L + D T + +PL P G + P + Sbjct: 67 RLPLDELVGSRTGDPRVHPRPFTRHGQTWVPLTRNPNDGLHAYKQILPAPATPRTEWTPR 126 Query: 121 PE--IRSPHNGIYAIQTQD 137 PE H +Y + + Sbjct: 127 PEQGSHEGHEWLYVLSGRL 145 >gi|295094125|emb|CBK83216.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 242 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ++ L A K G+ + +K +R +P + + I + Sbjct: 4 IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKA-----YPDLDRLVCICEILDVQ 58 Query: 69 ICQLLDLPFSDGRTT 83 + +L+ + Sbjct: 59 VGELIYGKGDEPEAP 73 >gi|227508605|ref|ZP_03938654.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191937|gb|EEI72004.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 184 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 40/159 (25%), Gaps = 12/159 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-NRWPSTESIFKILAATN 66 KI + + E+ + + + LA K + S +K ++ + +FKI Sbjct: 2 KIGKVLQVQREKRHWSQAELAEKLSISRQSISKWEQEVALPSFANVVAISDLFKISLDDL 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP----- 121 L S K + + + WN V P Sbjct: 62 IKGDDKLMDKLSRNDKMRPVTKILLWAFGFAISIYVLLQVLHIGVADVWNWVEFPLFVTF 121 Query: 122 ------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 N ++ T ++P Sbjct: 122 IALLFTINWRQLNRAFSKPTIILGIIVLTLFLVPEIYGF 160 >gi|255655594|ref|ZP_05401003.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296878842|ref|ZP_06902842.1| probable transcriptional regulator [Clostridium difficile NAP07] gi|296430114|gb|EFH15961.1| probable transcriptional regulator [Clostridium difficile NAP07] Length = 403 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI + I + + NLT LA+ G+ + +K + +P E + + Sbjct: 2 QIKIGKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56 Query: 66 NET 68 N + Sbjct: 57 NVS 59 >gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 345 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + T +A + G+ + NK + P E + I + Sbjct: 2 NIGNVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSN-----PDIELLAPIARLLHI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 ++ LL + + + F Sbjct: 57 SLDTLLSFHENLTDVEITELIQEMDKMFSA 86 >gi|261366797|ref|ZP_05979680.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571333|gb|EFB76868.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 10/104 (9%), Positives = 28/104 (26%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + E + +A+ G +S N+ + PS E + + Sbjct: 3 EVGKRLKALRESIGFSQVKMAQALGSTQSSINRYENGQS-----SPSVELFRRYADYFDV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ + T + + P Sbjct: 58 SLDYIFARTDKPQGETYHFKPKAAPEREELRQFIEMCFDPQSPM 101 >gi|313897846|ref|ZP_07831387.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957381|gb|EFR39008.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 223 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA K G++ S +K +R +P+ +++ KI+ T Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65 Query: 69 ICQLLDLPFSDGRTTEK 85 +LL + TE Sbjct: 66 PNELLSGEWKYIDHTEP 82 >gi|257062849|ref|YP_003142521.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790502|gb|ACV21172.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 459 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + L+ LA + GL + +K +R P T+++ + Sbjct: 4 EVAERLAELRRAKGLSQEELAHELGLSRQAVSKWERAES-----SPDTDNLIALAKLYGM 58 Query: 68 TICQLLD 74 T+ +L+ Sbjct: 59 TLDELVH 65 >gi|52787332|ref|YP_093161.1| hypothetical protein BLi03647 [Bacillus licheniformis ATCC 14580] gi|52349834|gb|AAU42468.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 134 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 7/112 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + E+ +L+ + LA AG+ + ++ + G P +I K Sbjct: 1 MAMT---RFGERLKELREQRSLSVNQLAMYAGVSAAAISRIEN----GHRGVPKPATIRK 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + A QL+D+ +++ + + G D +F Sbjct: 54 LAEALKMPYEQLMDIAGYMRADEIREQPRGYVTMQEIAAKHGVEDLWLFKPE 105 >gi|291530756|emb|CBK96341.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 302 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 6/99 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ +T LA K G+ + +K + +P + + KI + +I L Sbjct: 9 LQMLRKQSGITQEQLADKLGVTAQAVSKWENGS------YPDGDLLPKIADIFDVSIDNL 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ + + + Sbjct: 63 YGRGEERCSFEQQVLNHMRAIADSNQDFSAEWMKNYLNI 101 >gi|295702409|ref|YP_003595484.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294800068|gb|ADF37134.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 180 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 10/124 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + + LT L + L ++ +R PS E+ F IL Sbjct: 2 EIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLS-----SPSLETFFSILEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + ++ + ++E + + + + Sbjct: 57 EPKEFFEIDTHVQKVVYREEDYTSYCEDEKG-----YHIQWLVHESNEKEMEPIRLILHE 111 Query: 128 NGIY 131 G + Sbjct: 112 KGAF 115 >gi|52080997|ref|YP_079788.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52004208|gb|AAU24150.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] Length = 111 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + LLD + + L+ + Sbjct: 58 VHTLLDEKDETEYDGQLDSEWENLVRDAMASG 89 >gi|254975202|ref|ZP_05271674.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092592|ref|ZP_05322070.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255314329|ref|ZP_05355912.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517008|ref|ZP_05384684.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650110|ref|ZP_05397012.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683237|ref|YP_003214522.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686833|ref|YP_003217966.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209400|emb|CBA62866.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212849|emb|CBE04052.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 404 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI + I R+ + NLT LA+ G+ + +K + +P E + + Sbjct: 2 QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56 Query: 66 NET 68 N + Sbjct: 57 NVS 59 >gi|317505065|ref|ZP_07963012.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315663843|gb|EFV03563.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 245 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 17/226 (7%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M +K I + I + ++ +++G G+N S E+I Sbjct: 25 MQENKQEKSLIKQNISLYLAKKGVSDYVYYKESGTTRGIL---------GQNNGISEENI 75 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + LA + + L + E+ E + G + F G Sbjct: 76 SRFLAYAPDVNHEWLLTGKGNMLKEEETEDVSTPVVSYDPKVGQPYYDVDFLGGFSEIYN 135 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRT 177 + + + SM P GDI+ L I + Sbjct: 136 SQVSLPDHNIIVPGFDRAHLWCNVTGHSMEPQISHGDIIALRPCTIDDIQYGEMYAVVLD 195 Query: 178 GDIVAKVLISRRGRSI-DLMSLNCCYPVDTVEMSDI----EWIARI 218 K++ + + +N + E++ I E I I Sbjct: 196 TIRTIKIIRRGSSKKFLRYVPINPNFDEQEFEVNRIINVFEVIGSI 241 >gi|317132318|ref|YP_004091632.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470297|gb|ADU26901.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 373 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + +T LA G+ + +K + +P + ++ A N Sbjct: 5 QIGANIASLRKEKGVTQEELADYLGISKPAVSKWESGQS-----YPDILLLPRLAAYFNR 59 Query: 68 TICQLLDLPFSDGRTT 83 T+ +LL Sbjct: 60 TVDELLGYAAQMTVEE 75 >gi|57641274|ref|YP_183752.1| transcription regulator [Thermococcus kodakarensis KOD1] gi|57159598|dbj|BAD85528.1| predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus kodakarensis KOD1] Length = 65 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E LT LA+ G+ + ++ + PS + FKI I Sbjct: 3 NRLRELREERGLTQEELAKALGVTRQTIIAIEKGKYD-----PSLKLAFKIARFFGLNIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DIFIYEG 64 >gi|66045941|ref|YP_235782.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63256648|gb|AAY37744.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 203 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 54/211 (25%), Gaps = 43/211 (20%) Query: 4 FSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 SHK + + E + L+ LAR++G+ + + ++ + PS S+ K Sbjct: 16 LSHKATMDTGARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKK 70 Query: 61 ILAATNETICQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGV 108 +L T+ G+ + + + PS F Sbjct: 71 LLEGIPMTLADFFTFDQPPGQDQYVFRAGDQPDLGRNGARLLLVGATLPSRQMRFLREQY 130 Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 P ++ P + S + + G Sbjct: 131 AP---GADSGDEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PG 171 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 D + +++S N Sbjct: 172 DGYYFPTTLPH----RFRNIGHDEAEIISAN 198 >gi|306520117|ref|ZP_07406464.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 405 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI + I R+ + NLT LA+ G+ + +K + +P E + + Sbjct: 2 QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56 Query: 66 NET 68 N + Sbjct: 57 NVS 59 >gi|146305038|ref|YP_001192354.1| XRE family transcriptional regulator [Metallosphaera sedula DSM 5348] gi|145703288|gb|ABP96430.1| transcriptional regulator, XRE family [Metallosphaera sedula DSM 5348] Length = 184 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 11/112 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I +M E LT + LAR+ G+ + K ++ I+ P + KIL I Sbjct: 8 IRKMREMAGLTQTELARRVGVSQSLIAKIEKGKID-----PKLSVVRKILDELTPLIEVP 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------TGNKWNTV 118 + + + G ++ V Sbjct: 63 EVAVNLMHSPVISAKMDDRVKDIVELMESNNISQVPVVNSSGKLMGMIYDYV 114 >gi|146311755|ref|YP_001176829.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145318631|gb|ABP60778.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 191 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 8/143 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +I I E + S LA +AG+ +K +R P+ + + Sbjct: 4 MPDDMNHRISARIRLERESRGWSLSELAERAGVSRAMIHKIERSES-----SPTATLLAR 58 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A ++ L+ + P+ P S S V + Sbjct: 59 LSGAFGISMSTLIARAEMQEGKLLR-FANQPVWRDPQSQYLRRHVSPRTDLPIDLVQVEL 117 Query: 121 PEIRSPHNGI--YAIQTQDTRHK 141 P YA+ Q + Sbjct: 118 PARSDVPMPASSYALARQLIWLQ 140 >gi|317484534|ref|ZP_07943442.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924195|gb|EFV45373.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 184 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 49/166 (29%), Gaps = 20/166 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + R+ E L+ +A+ +G+ + + +R P+ +++KI + Sbjct: 8 VAENLKRLREERKLSLDAVAKCSGVSKSMLGQIERGVTN-----PTISTLWKIANGLKIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF----------DSGVFPTGNKWNTV 118 L+ P +D + + + F + G + + Sbjct: 63 FTSLMMRPETDVEVVPRSAITPFVETDGKYRNYPVFPFDSSRGFEMYAIELDPGVRLDAE 122 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 PE +++ GD + + + Sbjct: 123 PHPEGTQEFITVFSG-----ALTVLLDGERWGIADGDSIRFKADRK 163 >gi|270340204|ref|ZP_06007424.2| transcriptional regulator [Prevotella bergensis DSM 17361] gi|270332301|gb|EFA43087.1| transcriptional regulator [Prevotella bergensis DSM 17361] Length = 238 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 32/238 (13%) Query: 3 SFSHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE-- 56 + ++ I + I + + ++ K G+ + + + ++ +T Sbjct: 1 MQTKEQKISPIKQRILQFSATLGVSKRNFYSKIGVSRGTLESNTGITEDIMAKFIATYPE 60 Query: 57 -SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---- 111 +I ++ + + + + P + + + F S Sbjct: 61 VNISWLITGEGDMLKSIWEEPQIEVKPIHQPRSTEKKEETQVVYLYDFEASAGLRALFDN 120 Query: 112 --GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-- 167 N +T+ +P + D SM PL + GDI++ Sbjct: 121 NRQNIIDTIKIPN----------LPKCDGAIHIVGDSMYPLLKSGDIILYRQMPLDINNL 170 Query: 168 --GDRL---LIKPRTGDIVAKVLISRRGRS--IDLMSLNCCYPVDTVEMSDIEWIARI 218 G+ IV K + I L S N + ++ I +A + Sbjct: 171 LYGEMYLLSYDIDGDDYIVVKYIRKSEKGEPFITLGSENPAHAPRDIDFRRITALALV 228 >gi|167767648|ref|ZP_02439701.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|319938591|ref|ZP_08012978.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] gi|167710665|gb|EDS21244.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|291560782|emb|CBL39582.1| Predicted transcription factor, homolog of eukaryotic MBF1 [butyrate-producing bacterium SSC/2] gi|319806227|gb|EFW02919.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] Length = 223 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA K G++ S +K +R +P+ +++ KI+ T Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65 Query: 69 ICQLLDLPFSDGRTTEK 85 +LL + TE Sbjct: 66 PNELLSGEWKYIDHTEP 82 >gi|301017870|ref|ZP_07182512.1| helix-turn-helix protein [Escherichia coli MS 69-1] gi|300399967|gb|EFJ83505.1| helix-turn-helix protein [Escherichia coli MS 69-1] Length = 178 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHIYRNGG 163 >gi|291526868|emb|CBK92454.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 190 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + KKI + + + +T A K + + ++ + P + I Sbjct: 1 MNQKKIGSFLKELRKEMGITQEEFAEKLDVSSRTISRWETGAN-----MPDISLLVNIAE 55 Query: 64 ATNETICQ 71 N +I + Sbjct: 56 IFNVSIPE 63 >gi|57235098|ref|YP_182252.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57225546|gb|AAW40603.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 72 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 9/67 (13%) Query: 3 SFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + K I E I + ++ ++ LA +AG+ T +R R PS ++I Sbjct: 1 MMTEKTIEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGE-----RNPSLKNI 55 Query: 59 FKILAAT 65 + I A Sbjct: 56 YAISRAL 62 >gi|269121461|ref|YP_003309638.1| phage repressor [Sebaldella termitidis ATCC 33386] gi|268615339|gb|ACZ09707.1| putative phage repressor [Sebaldella termitidis ATCC 33386] Length = 220 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 60/210 (28%), Gaps = 14/210 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + T LA + S + R P I + N + Sbjct: 10 DYLKNFIKERDYTLESLAEDLNVSFGSLSHYTTG-----KRIPKDVFIDNFASYFNLSKE 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 Q ++ K+ L+ S G + + Sbjct: 65 QKNEIKALIELDRSPFLKDRIKLHNKKETPRLTVFSLNT-AGEGLLQ-ELSKEVFVLPAD 122 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAKVLI 186 I + + + P GD +++ S + G ++ + AK + Sbjct: 123 LEIYEDSFIVEIRGDKLAPEILNGDRILVESFNFNNWRELDGKIVV-IDIKNEKFAKRVG 181 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 G +I L SL Y + + +I+++ Sbjct: 182 FYDGEAI-LKSL-TGYEKNILVDENIKYVG 209 >gi|87119803|ref|ZP_01075700.1| transcriptional regulator, putative [Marinomonas sp. MED121] gi|86165279|gb|EAQ66547.1| transcriptional regulator, putative [Marinomonas sp. MED121] Length = 184 Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E + + L+ LA++AG+ ++ + + + PS S+ KILA Sbjct: 2 DIGERLLTIRRNKGLSQRDLAKRAGVTNSAISMIETNRV-----SPSVSSLEKILAGMGM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 ++ + + D + + LL Sbjct: 57 SLTEFFSIKQKDKLDYQVVYRSDELLDVS 85 >gi|291449844|ref|ZP_06589234.1| regulatory protein [Streptomyces albus J1074] gi|291352793|gb|EFE79695.1| regulatory protein [Streptomyces albus J1074] Length = 202 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 8/135 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL---AAT 65 + + + + T +GL+ G+ ++ ++ + R PS E + I Sbjct: 18 VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGN-----RRPSLELLLPIAAAHDVP 72 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + R ++ ++ G V G + V Sbjct: 73 LDRLVGAPPAGDPRVRLEPIEQGNRTVIPLSRRPGGLQAFKWVLRPGEGCDPVEEQRTHE 132 Query: 126 PHNGIYAIQTQDTRH 140 + +Y I + Sbjct: 133 GYEWLYVISGRLRLL 147 >gi|167031598|ref|YP_001666829.1| transcriptional regulator [Pseudomonas putida GB-1] gi|166858086|gb|ABY96493.1| transcriptional regulator [Pseudomonas putida GB-1] Length = 233 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 55/230 (23%), Gaps = 26/230 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + LTPS A + + P N + R + ++ Sbjct: 5 GDRLKALLHECGLTPSDFAAQRSVTPQHVNNWFK-------RGVPLARLDELADLFCVHR 57 Query: 70 CQLLDLPFSDGRTTE-----------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L + + + + + + Sbjct: 58 RWLRTGEGPKHPNPILRNGPPKPALANPPTPLSVRHGRVLNVPYYEMHNSLLSPVAGKNL 117 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P G+ A +MLPL L ++ ++ G Sbjct: 118 RLPAKALKGLGVQA--GNAICLAMPAGNMLPLIPLEATLAIDLSMTRVVDGETYALLHNG 175 Query: 179 DIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222 + L ++ L S Y V+ + +E + + S Sbjct: 176 MLRVNSLSLGLHDTLYLHSHDRRNYAVERYTPAQRQAQGLEILGWVFHWS 225 >gi|223983505|ref|ZP_03633690.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] gi|223964500|gb|EEF68827.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] Length = 270 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 10/124 (8%), Positives = 32/124 (25%), Gaps = 5/124 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + + LA + + + +K + +P E + ++ ++ +L Sbjct: 7 LQKRRKEVGFSQEQLAFELNVSRQAVSKWESGQG-----YPEVEKLIQLSELLGISLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + K E + S + + R Sbjct: 62 MKETREHPSAPIKPLDEEEQEWRDEPHSPITLPDDILDEDSLIGRFAYSTDRDTVERYLD 121 Query: 133 IQTQ 136 + + Sbjct: 122 LNQR 125 >gi|94499248|ref|ZP_01305786.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] gi|94428880|gb|EAT13852.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] Length = 182 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + ++ L+ LA++AG+ ++ + ++ + PS S+ K+L Sbjct: 2 DVGTRLKEVRKKSGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLGGIPL 56 Query: 68 TICQLLDLPF 77 ++ + + Sbjct: 57 SLTEFFETED 66 >gi|328945491|gb|EGG39642.1| transcriptional regulator [Streptococcus sanguinis SK1087] Length = 108 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95 Query: 68 T 68 Sbjct: 96 N 96 >gi|260438757|ref|ZP_05792573.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292808744|gb|EFF67949.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 267 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 5/104 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ ++ L+ LA K + + +K + P + I ++ + + Sbjct: 3 LGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQS-----LPDLDFIAQLSDIFSVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 L+ ++ K++ L + G Sbjct: 58 SDYLIKDEMTEPDELPYKKRNYRLSERSKRIILVIVSAAALVAG 101 >gi|194431949|ref|ZP_03064239.1| DNA-binding protein [Shigella dysenteriae 1012] gi|331682878|ref|ZP_08383497.1| putative oxidoreductase/putative repressor [Escherichia coli H299] gi|194419857|gb|EDX35936.1| DNA-binding protein [Shigella dysenteriae 1012] gi|320182531|gb|EFW57422.1| Transcriptional regulator yidN, Cro/CI family [Shigella boydii ATCC 9905] gi|331080509|gb|EGI51688.1| putative oxidoreductase/putative repressor [Escherichia coli H299] gi|332094663|gb|EGI99708.1| helix-turn-helix family protein [Shigella dysenteriae 155-74] Length = 178 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHIYRNGG 163 >gi|327458674|gb|EGF05022.1| transcriptional regulator [Streptococcus sanguinis SK1057] Length = 96 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LAR AG+ + + +R PS KI NE Sbjct: 29 QLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 83 Query: 68 T 68 Sbjct: 84 N 84 >gi|297162225|gb|ADI11937.1| putative transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 190 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 21/160 (13%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT + + + R T LA ++G+ + ++ PS + Sbjct: 1 MTDLDQLTQSLARNLKRWRNERGFTLDALAARSGVSRGMIIQIEQARTN-----PSVGTT 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSG 107 K+ A +I LLD + + + + Sbjct: 56 VKLADALGVSITTLLDYESGPKVQLVPAAQAVRMWSTDAGSYTALLVGTEARGPLEMWEW 115 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 G+ ++ P + A + D S Sbjct: 116 RLMPGDGSDSDPHPSGTFELLHVRAGE---LTLTVGDESY 152 >gi|187477387|ref|YP_785411.1| transcriptional regulator [Bordetella avium 197N] gi|115421973|emb|CAJ48494.1| putative transcriptional regulator [Bordetella avium 197N] Length = 177 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 9/134 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + + + R+ L+ + LA +AGL + S + Sbjct: 1 MSEPVLEHVSANVRRLRAERGLSQTALAARAGLSRRMIVGLESGEAN-----ISLAKLGL 55 Query: 61 ILAATNETICQLLDLPFSDGRT----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I A + +L+ P + L+ P + G ++ Sbjct: 56 IATALDVNFIELVSSPGQTPGALTWRGLHPGSQAHLVASAPGKANTELWIWTLAPGERYQ 115 Query: 117 TVGVPEIRSPHNGI 130 P S + Sbjct: 116 AEPDPPGWSEILYV 129 >gi|153815811|ref|ZP_01968479.1| hypothetical protein RUMTOR_02056 [Ruminococcus torques ATCC 27756] gi|145846836|gb|EDK23754.1| hypothetical protein RUMTOR_02056 [Ruminococcus torques ATCC 27756] Length = 146 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 11/124 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +K++E +++ +++ ++ +A+ G+ ++ + KR P +E++ K Sbjct: 1 MFVKGGQKMYEIFEQLLQKYGVSAYKVAKATGVTQSTLSDWKRGRST-----PKSENMKK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNK 114 + +I L+ + + K K+ + + G G + Sbjct: 56 LADYFGVSIDYLMTGKEETEKEPKLKPKDEKDIKEILANTEQLLKQDGLMFDGDPASPEA 115 Query: 115 WNTV 118 ++ Sbjct: 116 IESI 119 >gi|118594424|ref|ZP_01551771.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] gi|118440202|gb|EAV46829.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] Length = 516 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 12/178 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + I + H LT + A K L P++ ++ +R + + + KI Sbjct: 2 QKIVGNNIRELRTLHGLTLNAFAEKLALSPSNLSRIERGSLNIK-----VSLLQKIAEVL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + K K+ + S + F G + ++ S Sbjct: 57 GTSPHVFFNKYGQNTGP-IKSIKDFTHQFRESSRYINEYSGKTFVIGFGGEIIQDNQLIS 115 Query: 126 PHNGIYAIQT-QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + I +Q+ + P D L+ + + + + + V Sbjct: 116 LVHDINLLQSLNIRIVLVYG--IRPQI---DFLLNKKSTETMVNNIRVTTKDSMGHVI 168 >gi|118472418|ref|YP_885545.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118173705|gb|ABK74601.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 201 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 9/151 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + + LT LA AG+ ++ +R PS ++ ++ Sbjct: 19 DLGSRIRMLRKERQLTTERLAETAGVSAGLISQIERGNGN-----PSFATLVQLAHGLQM 73 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125 I QLL+ P S K E+ + + GG ++ V P Sbjct: 74 PIGQLLEAPESKSVVVRKNERRRLDGHGLANDDGGSYELLTPDLNGALEATWVVTPPGYD 133 Query: 126 PHNGIYAIQTQDTRHKTQD--TSMLPLYRKG 154 Y ++ L R Sbjct: 134 TSATPYHHHGEEFGIVLSGTKDVYLDGIRHR 164 >gi|330469929|ref|YP_004407672.1| nickel-type superoxide dismutase maturation protease [Verrucosispora maris AB-18-032] gi|328812900|gb|AEB47072.1| nickel-type superoxide dismutase maturation protease [Verrucosispora maris AB-18-032] Length = 115 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 3/83 (3%) Query: 140 HKTQDTSMLPLYRKGDILILNSA-IQVNCGDRL--LIKPRTGDIVAKVLISRRGRSIDLM 196 SM P R GD +++ ++ GD + + + R +V K + L Sbjct: 18 VLVTGPSMSPTLRHGDAVLVRRGGREIRPGDVVIAVFRSRPDLLVVKRAVRPTDGGWWLY 77 Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219 N D+ + + R++ Sbjct: 78 GDNDLVTDDSRAYGVADVLGRVV 100 >gi|312865953|ref|ZP_07726174.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098357|gb|EFQ56580.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 158 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 40/146 (27%), Gaps = 6/146 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + H+LT A G+ S ++ + STE + +I N + Sbjct: 2 IGDNLKALRKSHHLTQPEFAAMIGISRNSLSRYENGTS-----SVSTELLDRICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L E + + + G+G + + V + Sbjct: 57 YIDL-VGQEKMLGPVEDYQLTLKIEIIKERGAGILSQLYRYQDSQGIDFDDVSNPWILMS 115 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKG 154 + + L Y Sbjct: 116 DDLSDLINSKIYLVASFDELDRYNGY 141 >gi|302387287|ref|YP_003823109.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302197915|gb|ADL05486.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 331 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + ++ + LA + G+ S +K + P E I K+ + Sbjct: 3 LAEKITALRKKVGWSQEELAYQMGVSRQSVSKWESGTSI-----PDLERILKLSQVFGVS 57 >gi|239820585|ref|YP_002947770.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805438|gb|ACS22504.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S +I + + +++ LA+ +G+ + ++ +R + PS E++ + Sbjct: 1 MRSLSAARIGAQVRALRMAADVSGGALAKASGISASMLSRIERGLV-----SPSVETLER 55 Query: 61 ILAATNET 68 + + Sbjct: 56 LSKGLGVS 63 >gi|226312433|ref|YP_002772327.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226095381|dbj|BAH43823.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 185 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 19/180 (10%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H I E I R+ + NL+ + G+ T + +R P+ +++KI + Sbjct: 5 HTNIGENIKRIRKERNLSLDKTSEITGVSKTMLGQIERGKS-----APTITTLWKIASGL 59 Query: 66 NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + L+ + + + + + P F+ Sbjct: 60 RLSFSSLISQYKPNVTIVKKKEVNPIIENDGQYRVYPLVPYNPEQQFEIFSVTLEPGCEH 119 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIK 174 + P I + + + + D LI + GDR++ Sbjct: 120 IAEPHTTGVEEFILVNEG---TLEVVVNEQIYVVEPEDTLIFKADRPHIYQNNGDRIVKC 176 >gi|283833076|ref|ZP_06352817.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] gi|291070694|gb|EFE08803.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 191 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 14/148 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + + LA +AG+ +K +R P+ + ++ A Sbjct: 9 NQRIGARIRLERESRGWSLTDLAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAF 63 Query: 66 NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 ++ L+ + + L S D + Sbjct: 64 GISMSMLIARAEMQEGKLLRFADQPVWHDPQSHYLRRHVSPRSDLPIDLVQIELPAGSD- 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + +P Q + Sbjct: 123 IPMPASSYVQARQLIWLQQGELVFVEGD 150 >gi|220920598|ref|YP_002495899.1| peptidase S24 and S26 domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219945204|gb|ACL55596.1| peptidase S24 and S26 domain protein [Methylobacterium nodulans ORS 2060] Length = 171 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 38/141 (26%), Gaps = 4/141 (2%) Query: 84 EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKT 142 + F G + E A + Sbjct: 1 MSLYRVGEQAADWSGLVRIPFMRTTLCAGFPSSAEDFTEGALELPRWLAPNPAATFIWRV 60 Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 + M D+ +++ ++ + G ++ G++ K L+ G + L N Sbjct: 61 RGWCMKGAGIHDQDLAVVDRSLHPSPGAVVVAIVN-GEMSLKRLV-LDGNRLALTFDNPE 118 Query: 202 YPVDTVEMSDIEWIARILWAS 222 P +E + I +L S Sbjct: 119 MPAFGLEDLEECQIWGVLLFS 139 >gi|258508248|ref|YP_003170999.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257148175|emb|CAR87148.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus GG] gi|259649565|dbj|BAI41727.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 176 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 5/103 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ +R L+ + LA G+ + +K + E P + I + + Sbjct: 3 GERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAE-----PDLQKIQQFTMILGVSY 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 LL + + + + + G + G Sbjct: 58 ADLLGNEPPEPKPAANRPSSAITITSLINDRLGNYTGFQIAEG 100 >gi|225405507|ref|ZP_03760696.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] gi|225042960|gb|EEG53206.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] Length = 398 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I + +T LAR G+ + +K + P + + I Sbjct: 2 NIGATIVNLRREKGVTQEQLARAVGVSKPAVSKWETGQS-----CPDIQLLAPIARYFG 55 >gi|199597505|ref|ZP_03210934.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|199591528|gb|EDY99605.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] Length = 176 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 5/103 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ +R L+ + LA G+ + +K + E P + I + + Sbjct: 3 GERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAE-----PDLQKIQQFTMILGVSY 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 LL + + + + + G + G Sbjct: 58 ADLLGNEPPEPKPAANRPSSAITITSLINDRLGNYTGFQIAEG 100 >gi|157145741|ref|YP_001453060.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] gi|157082946|gb|ABV12624.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] Length = 191 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 14/147 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + + LA +AG+ +K +R P+ + ++ A Sbjct: 9 NQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAF 63 Query: 66 NETI--------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 ++ Q L + + L S D + Sbjct: 64 GISMSTLIARAEMQEGKLLRFADQPVWHDPQTHYLRRHVSPRSDLPIDLVQISLPAGSD- 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQD 144 V +P Q + Sbjct: 123 VPMPAASYALARQLIWLQQGELVFVEG 149 >gi|282861056|ref|ZP_06270121.1| putative phage repressor [Streptomyces sp. ACTE] gi|282563714|gb|EFB69251.1| putative phage repressor [Streptomyces sp. ACTE] Length = 145 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179 PE+ G A++ + SM+P + GD L++ +V GD ++++ Sbjct: 2 PELTQEPGGGRAVRRPFQVVEVTGPSMVPTFYHGDWLLVQYGARVRPGDVVILRHPFQQD 61 Query: 180 -IVAKVLISRRGRSIDLMSLN 199 +V K RRG ++ N Sbjct: 62 LLVVKRAAERRGNGWWVLGDN 82 >gi|238060873|ref|ZP_04605582.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] gi|85720864|gb|ABC75843.1| SigN [Micromonospora sp. ATCC 39149] gi|237882684|gb|EEP71512.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] Length = 120 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 7/100 (7%) Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLL--IKPRTGDIV 181 ++ T SM P R GD L++ + GD ++ + R +V Sbjct: 4 DDPRAADRLRGPLTAVLVTGPSMAPTLRHGDALLVRRGGRPIRPGDIVVAVFRSRPDLLV 63 Query: 182 AKVLISRRGRSIDLMSLNC--CYPVDTVEMSDIEWIARIL 219 K + + N ++D+ R++ Sbjct: 64 VKRAVRPAAGGWWVRGDNDLVTDDSRAYGVADVR--GRVI 101 >gi|50121835|ref|YP_051002.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] gi|49612361|emb|CAG75811.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 370 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 38/127 (29%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ER LT LA AGL + + ++ GI S E I +L E Sbjct: 5 ERLCIARERRGLTQRALAEAAGLTSKTISNYEKAGIFDAIASDSMERISAVLEYPIEFFL 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + + ++ + G + + + P + Sbjct: 65 DRDVPSLTPEAVSFRAMTKLSAQKRDSALGAGKLAQELSAWIDGQFKLPKPNVPDSSFDG 124 Query: 131 YAIQTQD 137 Y+ + Sbjct: 125 YSEPERA 131 >gi|303240597|ref|ZP_07327112.1| putative phage repressor [Acetivibrio cellulolyticus CD2] gi|302591834|gb|EFL61567.1| putative phage repressor [Acetivibrio cellulolyticus CD2] Length = 223 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 69/229 (30%), Gaps = 32/229 (13%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I ++ + +T L + G+ + R E + K + Sbjct: 4 RMGSEISKLRKELGITQKQLGKIVGVSEGFIIDVETG------RRILNEDLIKKFSKALR 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF----------FDSGVFPTGNKWNT 117 LD+ ++ + + ++ + + + + Sbjct: 58 GEVGKLDIYEAEEKAYRPEPQKNVVKVVEKPVQDIWNDALAGVLMVVPVYNYKMEKQVEV 117 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 +P I + G +A + KGD++++++ ++ D + Sbjct: 118 KQLPIINNKVEG-FAKDKVFYLVIEDNDMAGFRVLKGDLVLVHNTHEI-DKDGIFFVEYK 175 Query: 178 GDIVAKVLISRRGRSIDLMSLNC-------CYPVDTVEMSDIEWIARIL 219 G + + + G + ++S N Y D+ + R++ Sbjct: 176 GKRTIRQIKNIEGGRLLIVS-NRGSLVTDTAY------RKDVNVLGRLV 217 >gi|239977932|ref|ZP_04700456.1| putative transcriptional regulator [Streptomyces albus J1074] Length = 211 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 8/135 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL---AAT 65 + + + + T +GL+ G+ ++ ++ + R PS E + I Sbjct: 27 VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGN-----RRPSLELLLPIAAAHDVP 81 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + R ++ ++ G V G + V Sbjct: 82 LDRLVGAPPAGDPRVRLEPIEQGNRTVIPLSRRPGGLQAFKWVLRPGEGCDPVEEQRTHE 141 Query: 126 PHNGIYAIQTQDTRH 140 + +Y I + Sbjct: 142 GYEWLYVISGRLRLL 156 >gi|297153462|gb|ADI03174.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 11/155 (7%) Query: 1 MTSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + + +A + + +T + LA G+ ++ ++ + R PS E Sbjct: 4 MDPKTDDDVLDAVGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQ-----RRPSLE 58 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + + L+ P + K + + + P S G + + Sbjct: 59 LLLPLARIYGVPLDDLVGAPRTGDPRIHLKPIRRYGMTFVPLSRRPGGVHAFKMIIPARP 118 Query: 116 NTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149 + P+ +Y + + LP Sbjct: 119 EPLEPTPQTHEGFEWLYVLNGHLRLVIGERDLTLP 153 >gi|237737466|ref|ZP_04567947.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229421328|gb|EEO36375.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 152 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + E L+ LA KAG+ + +R +G+ ++ KI A N T + Sbjct: 14 IKKFREDRGLSQKQLAEKAGIGSGTIGDIERGDRKGK-----ISTLDKISKALNLTKEER 68 Query: 73 LDLPFSDGRTTEKKEKEIPLLYF 95 L + P + Sbjct: 69 DRLDNAFMGRNITSSSIDPRVEI 91 >gi|325529272|gb|EGD06223.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 183 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + +H L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 4 EVAERLRFVRNKHALSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + RT + E+P L V P + Sbjct: 59 SLAEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGAGVKDRNMCIMREVYQP-LADTG 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + L + G +L+ GD + R + Sbjct: 118 PEMLVHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 165 Query: 188 RRGRSI-DLMSLNC 200 I +++S N Sbjct: 166 PSAEQICEVVSANS 179 >gi|312891075|ref|ZP_07750598.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296383|gb|EFQ73529.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 116 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +++ + I + + S A K G+ +F+K + + +I KIL Sbjct: 2 QELGKNIKLLRHEKGWSQSDFAAKLGISVPAFSKIENGLTDLHLS--RLNNIAKILDM 57 >gi|282865716|ref|ZP_06274766.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559360|gb|EFB64912.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 199 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 14/99 (14%) Query: 1 MTSFSHKK---------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 M S + + + R+ + +T + LA G+ ++ ++ + G R Sbjct: 1 MKEKSQEDPELDAVLTGVGPRLRRLRKDRGVTLAALAEATGISVSTLSRLESGG-----R 55 Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90 PS E + I A + L+ P K Sbjct: 56 RPSLELLLPIARAHEVPLDDLVGAPPPGDPRVRAKPIVH 94 >gi|261253382|ref|ZP_05945955.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] gi|260936773|gb|EEX92762.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] Length = 180 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/198 (10%), Positives = 56/198 (28%), Gaps = 32/198 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA+++G+ + ++ ++ + PS S+ KIL A Sbjct: 2 DVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVN-----PSVGSLKKILDAIPI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-------KWNTVGV 120 ++ + L + K+ G + G Sbjct: 57 SMGEFFTLEV--------EAKDDIFFTVDQMADLGDGKIKMLLVGAKREGRQLAILREFY 108 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + ++ + + + + + GD + R Sbjct: 109 PPGSDTGPDFLQHEGEEGGVVIRGEIEI--------TVGSKTQVLKAGDSYYFETRKPH- 159 Query: 181 VAKVLISRRGRSIDLMSL 198 ++ +L+S Sbjct: 160 ---RFRNKGKVECELISA 174 >gi|157145722|ref|YP_001453041.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895] gi|157082927|gb|ABV12605.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895] Length = 178 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + ++ + S LA G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLKALRQQREWSLSRLAEATGVSKAMLGQIERNES-----SPTVSTLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I N + P ++ T +++ ++ Sbjct: 55 IATGLNVPFSTFISPPEAEDLPTFDPQQQAMVI 87 >gi|118472941|ref|YP_890853.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118174228|gb|ABK75124.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 472 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 17/39 (43%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I + R+ E H LT LAR GL + N+ + Sbjct: 6 IGPRLRRLREEHGLTQVALARALGLSTSYINQLENDQRP 44 >gi|38232985|ref|NP_938752.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38199243|emb|CAE48874.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 474 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 5/121 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + +LT + LA G+ + N+ + R + + + KI A+ Sbjct: 6 VGSRLRQLRKERDLTQAALAELLGISASYINQIEHDV-----RPLTPQVLRKITASFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + P V + Sbjct: 61 ATFFSRDDSSRLIAELHDVMFDKEVCPQPIDVTELSTLVDHHPEAARAMVEMHRRYRRLR 120 Query: 129 G 129 Sbjct: 121 D 121 >gi|300812901|ref|ZP_07093295.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496127|gb|EFK31255.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 122 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + R ++ LA G+ + + + + P +++ KI + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKTVEKIANIFGVS 60 Query: 69 IC 70 Sbjct: 61 RN 62 >gi|15831463|ref|NP_310236.1| repressor protein [Escherichia coli O157:H7 str. Sakai] gi|13361675|dbj|BAB35632.1| putative repressor protein [Escherichia coli O157:H7 str. Sakai] Length = 174 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 46/170 (27%), Gaps = 19/170 (11%) Query: 45 GIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 G S+ KIL N + + K +PLL + S Sbjct: 2 NGGGAPSSRYISSLAKILKVNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS- 60 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILI 158 + + I S + I + SM G + Sbjct: 61 ------------DYMKNSSITSCVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVF 108 Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 ++ V G+ +L P+ + G I L+ N YP ++ Sbjct: 109 VDPDRIVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPTNPRYPSIMLD 158 >gi|306813594|ref|ZP_07447777.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|305853041|gb|EFM53485.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] Length = 178 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124 >gi|293556759|ref|ZP_06675322.1| signal peptidase I [Enterococcus faecium E1039] gi|291601091|gb|EFF31380.1| signal peptidase I [Enterococcus faecium E1039] Length = 183 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/104 (9%), Positives = 36/104 (34%), Gaps = 13/104 (12%) Query: 117 TVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 + + + ++ + SM + ++GD++++ ++ D ++ + Sbjct: 12 WLIFKYLLVSVFLAFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQL 71 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I K +I G + + ++ +++ Sbjct: 72 ADGTIYIKRVIGLPG------------ENVSYQNDQLKINGKVV 103 >gi|218553960|ref|YP_002386873.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|256018347|ref|ZP_05432212.1| putative DNA-binding transcriptional regulator [Shigella sp. D9] gi|300901847|ref|ZP_07119882.1| helix-turn-helix protein [Escherichia coli MS 84-1] gi|301306843|ref|ZP_07212892.1| helix-turn-helix protein [Escherichia coli MS 124-1] gi|332279399|ref|ZP_08391812.1| conserved hypothetical protein [Shigella sp. D9] gi|218360728|emb|CAQ98289.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|300406059|gb|EFJ89597.1| helix-turn-helix protein [Escherichia coli MS 84-1] gi|300837928|gb|EFK65688.1| helix-turn-helix protein [Escherichia coli MS 124-1] gi|315253499|gb|EFU33467.1| helix-turn-helix protein [Escherichia coli MS 85-1] gi|332101751|gb|EGJ05097.1| conserved hypothetical protein [Shigella sp. D9] Length = 178 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124 >gi|210612865|ref|ZP_03289498.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] gi|210151386|gb|EEA82394.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] Length = 223 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA K G++ S +K +R +P+ +++ KI+ T Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65 Query: 69 ICQLLDLPFSDGRTTEK 85 +LL + TE Sbjct: 66 PNELLSGEWKYIDHTEP 82 >gi|288549632|ref|ZP_05967658.2| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] gi|288318084|gb|EFC57022.1| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 183 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 9/129 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H + + + + + S LA K G+ + +R P+ +++K Sbjct: 9 MDMTQH--LASTLKALRQARGWSLSMLAEKTGVSKAMLGQIERNES-----SPTVSTLWK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTV 118 I N + + +++ + + L+ S G + Sbjct: 62 IATGLNVPFSAFITPEAESPAVYDPQQQAMVVKPLFPWDEALKFDHFSITLAPGALSEST 121 Query: 119 GVPEIRSPH 127 H Sbjct: 122 PHEAGVIEH 130 >gi|154250004|ref|YP_001410829.1| cupin 2 domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153940|gb|ABS61172.1| Cupin 2 conserved barrel domain protein [Fervidobacterium nodosum Rt17-B1] Length = 175 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 44/171 (25%), Gaps = 18/171 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I R+ T LA + L + ++ + + PS E++ ++L Sbjct: 2 KIGSKIKRLRLARGYTQEELADRCDLSRSFISQLESDKV-----SPSVETLERVLRVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + KK + +P+ P + Sbjct: 57 DL--KHFFSDEQKKIIFKKNERVPMYELPKGVKIDILMD-------GIEDKEIDAKIVEL 107 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRT 177 + +D + + ++ + N GD Sbjct: 108 EPGSQTEQEDYH---DGDEFGYVIEGSVEIYIDGKKYRANEGDCFYYSADC 155 >gi|153810982|ref|ZP_01963650.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] gi|149832870|gb|EDM87953.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] Length = 126 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + +L+ LA+K G+ S N + R PS ++ KI I ++ Sbjct: 10 LAQLRQNAHLSQKQLAQKLGVSQASINYWENGQ-----RTPSVKAAQKISDYFKMPISEI 64 Query: 73 LDLP 76 Sbjct: 65 FSPY 68 >gi|148380346|ref|YP_001254887.1| DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] gi|148289830|emb|CAL83938.1| putative DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] Length = 144 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I E I + E + L++ + S + + R P + + KI N Sbjct: 2 KTIGERIKELREEKGINQLELSKILNVHKGSVSNWENN-----KRTPDADMLTKIADFFN 56 Query: 67 ET 68 + Sbjct: 57 CS 58 >gi|119491284|ref|ZP_01623338.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] gi|119453448|gb|EAW34610.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] Length = 377 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 37/139 (26%), Gaps = 5/139 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + ++ R L+ LA+ G+ + + + PS ++ Sbjct: 1 MKQDNELQNRLKQIRTRLGLSQQDLAKVVGVSRQTISGVESGQY-----APSARIALRLA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + L L R + +P+ + + Sbjct: 56 KALGCQMEDLFWLEEDCLRVEATPAQAVPVDQDVRFTLARVGGKLMAYPLLGEDAFRTEM 115 Query: 123 IRSPHNGIYAIQTQDTRHK 141 I + G + + K Sbjct: 116 IPADGEGWGQTENDAVQVK 134 >gi|328880928|emb|CCA54167.1| putative transcriptional regulatory protein [Streptomyces venezuelae ATCC 10712] Length = 190 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 18/145 (12%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ + + + R + LT LA +AG+ + ++ PS + Sbjct: 1 MSDLDQLTQSLARNLKRWRKERGLTLDALAARAGVSRGMIIQIEQARTN-----PSVGTT 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSG 107 K+ A +I LLD ++ + + + S Sbjct: 56 VKLADALGVSITTLLDYEQGPQVRIVPPDQAVRMWSTSTGSHTTLLVGTEARGPLELWSW 115 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYA 132 G+ + P+ + A Sbjct: 116 TLMPGDGSASDPHPDGTVELLNVTA 140 >gi|163745179|ref|ZP_02152539.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161381997|gb|EDQ06406.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 183 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 7/139 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + ++H L+ LA KAGL + + ++ PS S+ +L A Sbjct: 2 NVGDKLRAIRKKHGLSQRELAAKAGLTNGTISLIEKNRT-----SPSVASLKSLLDAIPI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125 ++ + + D + P G + Sbjct: 57 SMAEFFSILEEDDSAKVFYRAQELTEISPSHQGGVSLRQLGNAAQHALQVLHETYEPGAD 116 Query: 126 PHNGIYAIQTQDTRHKTQD 144 ++ + Sbjct: 117 TGPEFLHHDGEEAGVVVRG 135 >gi|163815391|ref|ZP_02206766.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] gi|158449365|gb|EDP26360.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] Length = 172 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + ++ + +T +A K G+ S ++ + P + ++ Sbjct: 13 MIDQVKIGNFLRKLRKEKGMTQEEIATKFGVSSRSVSRWENGNT-----MPDLAILVELA 67 Query: 63 AATNETICQ 71 + I + Sbjct: 68 DYYDVDIRE 76 >gi|150014927|ref|YP_001307181.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149901392|gb|ABR32225.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 222 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 64/216 (29%), Gaps = 10/216 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK--RFGIEGRNRWPSTESIFKILAAT 65 ++ E I + E+ LT LA+K G+ N+ + R + + + L Sbjct: 3 RVGENIKQAREKSGLTVKALAKKLGVAEKYLNEVEMGRKVAPESLIDKAGKVLKADLNDI 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS----GGFFDSGVFPTGNKWNTVGVP 121 + + + + K + + S + + Sbjct: 63 SMVVTDEVLMEERKTLKEIPKRNVESSEVWTDAFSSVLRSVPIYDYSLSNKKGSKEMPIH 122 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + Q + + +D M + A++ + G Sbjct: 123 SNKIENYP----QDKVFYLEIEDDEMNGFRMLKGDVAFAHAVKDISNSGFFLIDYKGKRK 178 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + + + L+S +T+E+ +++ IA+ Sbjct: 179 VRQIKVLGNSKLLLVSNAGSLLTETMELKEVDVIAK 214 >gi|332363049|gb|EGJ40836.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 108 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LAR AG+ + + +R PS FKI NE Sbjct: 41 QLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYT-----PSIVIAFKIAHIFNE 95 Query: 68 T 68 + Sbjct: 96 S 96 >gi|323173144|gb|EFZ58775.1| transcriptional regulator, XRE family [Escherichia coli LT-68] gi|332088053|gb|EGI93178.1| transcriptional regulator, XRE family [Shigella boydii 5216-82] Length = 87 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-----RRGRSIDLMSLNCC 201 M P +++GDI+I+++ + G+ + + + K + +L+ LN Sbjct: 1 MEPEFKEGDIVIIDTDVYPTPGEFVAACNGSHEATFKKYRPVGIGAKGEEDFELVPLNSD 60 Query: 202 YPVDTVEMSDIEWIARIL 219 YP+ I+ I ++ Sbjct: 61 YPICRSWEKPIKIIGTMV 78 >gi|307130384|ref|YP_003882400.1| transcriptional regulator [Dickeya dadantii 3937] gi|306527913|gb|ADM97843.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 188 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 17/167 (10%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ ++ K+I I E + S LA KA + +K +R P+ + Sbjct: 1 MSKETNMDKRIAARIRSERENRGWSLSDLAEKASVSRAMIHKIERGES-----SPTANLL 55 Query: 59 FKILAATNETICQLLDLPFSDG--------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 K+ A ++ LL + T + + + GS FD Sbjct: 56 GKLSGAFGLSMSTLLARAEMKQGRLLRVNDQPTWQDPETGYIRRHVSPGSDLPFDIVHIT 115 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 V +P + + ++GD L Sbjct: 116 LPPG-EKVPMPASAYAFLRQLVWVLSGELVFVEGD-VTHEMKQGDCL 160 >gi|295108419|emb|CBL22372.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 124 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I ++ ++ LA + G++ + K + R P E + KI Sbjct: 28 EINEKIRYFRKQRGISQELLAERTGINVNTIRKYEIGI-----RKPKVEQLKKIADGLEI 82 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + + LD+ + K+I + Sbjct: 83 SAIEFLDIEIENEADLIAMLKKISPFFKWDGLLHVLEGEKFL 124 >gi|269794649|ref|YP_003314104.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter keddieii DSM 10542] gi|269096834|gb|ACZ21270.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter keddieii DSM 10542] Length = 509 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ +I I + H T + LA K G ++ N+ ++ G S +++ + Sbjct: 1 MTTIDAARIGTLIRDARKLHGWTQAHLADKIGTSQSAVNRIEKGGQN-----LSLDTVRR 55 Query: 61 ILAAT 65 I A Sbjct: 56 ISEAL 60 >gi|331660294|ref|ZP_08361229.1| protein ImpA [Escherichia coli TA206] gi|331052561|gb|EGI24597.1| protein ImpA [Escherichia coli TA206] Length = 81 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 + GD+L+++ A + GD ++ + G+ K L+ R +++L+S + + T+ + Sbjct: 7 QNGDLLVVDRAEKPQHGDIVIAEID-GEFTVKRLLLRPCPALELVSDSPEF--RTLYPEN 63 Query: 212 IEWIARI 218 I + Sbjct: 64 ICIFGVV 70 >gi|295099191|emb|CBK88280.1| Predicted transcriptional regulator with C-terminal CBS domains [Eubacterium cylindroides T2-87] Length = 464 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 6/104 (5%) Query: 1 MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M +KI + ++ + LAR+ G+ + N+ + P+ + I Sbjct: 1 MDELRKRQKIISQLVEARLEQGISQAELARRLGIQRSGINRLESGTQN-----PTLDMIL 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 KI +A + + L+ L G Sbjct: 56 KIASALGKDVSLELNDKEEPMSNVYSLRIYDTELMRFSMEKQGL 99 >gi|260550789|ref|ZP_05824996.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406099|gb|EEW99584.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 210 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 17/144 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T H + I + + L+ LA +AG+ + + + S + I Sbjct: 33 TVLQH--VGTNIRSLRDERGLSQQELADQAGVSRRTIAALETGQVN-----ISLAKLDAI 85 Query: 62 LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 ++ P EK+E + LL PS S + G Sbjct: 86 AIVLGVNFRTIVSAPEHKEHALVNVLAWQGEKEESKATLLASVPSHSQVELWTWSLAVGE 145 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137 + PE IY ++ + Sbjct: 146 SYIAEADPEGW--QELIYVLEGEL 167 >gi|228475590|ref|ZP_04060308.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|228270372|gb|EEK11807.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I ++ + N++ LA K G+ S + +R P ++I +I N Sbjct: 4 KIGHQIQKLRKSENMSQEKLAEKLGVSRHSISNWEREISN-----PDLKTILEITKLFNV 58 Query: 68 TICQLLDLPFSDGRTTE 84 ++ QL+ Sbjct: 59 SLNQLIKGVEIMQVNKY 75 >gi|15801709|ref|NP_287727.1| hypothetical protein Z2285 [Escherichia coli O157:H7 EDL933] gi|15831292|ref|NP_310065.1| hypothetical protein ECs2037 [Escherichia coli O157:H7 str. Sakai] gi|168748967|ref|ZP_02773989.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|168759171|ref|ZP_02784178.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|168761476|ref|ZP_02786483.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|168769035|ref|ZP_02794042.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|168774335|ref|ZP_02799342.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|168781404|ref|ZP_02806411.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|168788512|ref|ZP_02813519.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|168799439|ref|ZP_02824446.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|195936926|ref|ZP_03082308.1| hypothetical protein EscherichcoliO157_10762 [Escherichia coli O157:H7 str. EC4024] gi|208810881|ref|ZP_03252714.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208815156|ref|ZP_03256335.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208818249|ref|ZP_03258569.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209397754|ref|YP_002270440.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|217329087|ref|ZP_03445167.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254792977|ref|YP_003077814.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|261224380|ref|ZP_05938661.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261257365|ref|ZP_05949898.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|291282537|ref|YP_003499355.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|12515268|gb|AAG56341.1|AE005362_11 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361504|dbj|BAB35461.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770139|gb|EDU33983.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188016678|gb|EDU54800.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|189000937|gb|EDU69923.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189354230|gb|EDU72649.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189361883|gb|EDU80302.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189368111|gb|EDU86527.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189371782|gb|EDU90198.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189378128|gb|EDU96544.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|208724387|gb|EDZ74095.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208731804|gb|EDZ80492.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208738372|gb|EDZ86054.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209159154|gb|ACI36587.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209771028|gb|ACI83826.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771030|gb|ACI83827.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771032|gb|ACI83828.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771034|gb|ACI83829.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771036|gb|ACI83830.1| hypothetical protein ECs2037 [Escherichia coli] gi|217317526|gb|EEC25954.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254592377|gb|ACT71738.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|290762410|gb|ADD56371.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|320190111|gb|EFW64762.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. EC1212] gi|320637032|gb|EFX06893.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. G5101] gi|320642399|gb|EFX11685.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320647755|gb|EFX16500.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320653362|gb|EFX21499.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659028|gb|EFX26651.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320663862|gb|EFX31090.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] gi|326340694|gb|EGD64491.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. 1044] gi|326340945|gb|EGD64738.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. 1125] Length = 178 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124 >gi|320321358|gb|EFW77485.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 130 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I I + + +LT LA + + + +R PS E I K+ Sbjct: 26 KIIGTRIKALRKHRSLTQEALAEAMACETATIGRYERGEF-----SPSVEQIAKMADVLG 80 Query: 67 ETICQLLDLPFSDGRTTEKKEKE 89 + +++ + R +E Sbjct: 81 VSPAEIIPSSYEISRQELVDLRE 103 >gi|222530393|ref|YP_002574275.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457240|gb|ACM61502.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 77 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ + L+ LA+ AG+ ++ +R R P+ +++ ++ A + Sbjct: 2 VGKKLRKLRTQKGLSQQQLAKIAGVPQSTIWYIEREN-----RNPTIKTMKRLATALGVS 56 Query: 69 ICQL 72 I + Sbjct: 57 IEEF 60 >gi|150398353|ref|YP_001328820.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029868|gb|ABR61985.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 182 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + R+ RHNL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGNRLRRVRLRHNLSQRELAKRAGVTNSTISLIESNSSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 59 GLAEFFSFEPEKPRKAF 75 >gi|82543302|ref|YP_407249.1| repressor protein [Shigella boydii Sb227] gi|81244713|gb|ABB65421.1| repressor protein [Shigella boydii Sb227] gi|323953491|gb|EGB49357.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Escherichia coli H252] Length = 189 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 54/210 (25%), Gaps = 40/210 (19%) Query: 12 AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI+RM E + T L G+ ++ + R E + + T ++ Sbjct: 10 AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L S + E+ G + Sbjct: 63 NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPS 108 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + G ++ G++ + + Sbjct: 109 TFKKP------FVITDNNSEFICDKEF------DDIRDGKWVISID--GEVTIRDITRLP 154 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ DIE I +I+ Sbjct: 155 GGRIFVEGGNRAF---ECKIEDIEIIGKII 181 >gi|16762234|ref|NP_457851.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143723|ref|NP_807065.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213419177|ref|ZP_03352243.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425644|ref|ZP_03358394.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580196|ref|ZP_03362022.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213608063|ref|ZP_03368889.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646691|ref|ZP_03376744.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857947|ref|ZP_03384918.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289805295|ref|ZP_06535924.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825759|ref|ZP_06544927.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25350381|pir||AC0925 repressor protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504538|emb|CAD09421.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139358|gb|AAO70925.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 189 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 54/210 (25%), Gaps = 40/210 (19%) Query: 12 AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI+RM E + T L G+ ++ + R E + + T ++ Sbjct: 10 AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L S + E+ G + Sbjct: 63 NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPS 108 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + G ++ G++ + + Sbjct: 109 TFKKP------FVITDNNSEFICDKEF------DDIRDGKWVISID--GEVTIRDITRLP 154 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ DIE I +I+ Sbjct: 155 GGRIFVEGGNRAF---ECKIEDIEIIGKII 181 >gi|317471258|ref|ZP_07930622.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] gi|316901266|gb|EFV23216.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] Length = 155 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KKI I + +T + L K G+ + ++ + P ++ + Sbjct: 16 LDQKKIGIFIALLRRERGITQAELGEKIGVTNKTVSRWENGNY-----MPDIATMLSLCE 70 Query: 64 ATNETICQ 71 +I + Sbjct: 71 EFEISINE 78 >gi|284038170|ref|YP_003388100.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283817463|gb|ADB39301.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 67 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT K++ + I + +T + G+ T+ N + + + +++ K Sbjct: 1 MTELK-KQVGQRIKEARNQKGITQREFGKMLGVSHTTVNGYETG-----KQNLTLDTLEK 54 Query: 61 ILAATNE 67 + AA Sbjct: 55 VAAALGM 61 >gi|284040164|ref|YP_003390094.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283819457|gb|ADB41295.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 68 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 3 SFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 K+I I + LT LA K G+ ++ N+ + + + +++ KI Sbjct: 1 MTDIKQITSTQIRDARKAKGLTQKELAEKLGVSESTVNQYESG-----KQNLTIDTLVKI 55 Query: 62 LAATNETI 69 A Sbjct: 56 ANALGMKF 63 >gi|116629237|ref|YP_814409.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116629297|ref|YP_814469.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116094819|gb|ABJ59971.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|116094879|gb|ABJ60031.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] Length = 115 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H L+ + L++ + + K + E PS+ ++ K+ + + Sbjct: 5 IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAE-----PSSGALAKLAEYFDVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 LL + + EK+ +L + + Sbjct: 60 ADYLLGSDKTSEPKSVDLEKDPVVLSYGGRPVSEEDMDVIKAI 102 >gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] Length = 140 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 31/136 (22%), Gaps = 6/136 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + LT LA + G+ + K + P + + A + + Sbjct: 2 IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDST-----PDLANAGALAEALDVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPH 127 + L+ + + + Sbjct: 57 LDALVGYDPHGTMLPMPPRGKHLFGTVTVGERWQIVIPKQARELFGIEAGDALLVLGDEE 116 Query: 128 NGIYAIQTQDTRHKTQ 143 G+ ++ + + Sbjct: 117 QGLAILKADEFMDRVS 132 >gi|52081992|ref|YP_080783.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580] gi|52787379|ref|YP_093208.1| Slr [Bacillus licheniformis ATCC 14580] gi|319647856|ref|ZP_08002074.1| slr protein [Bacillus sp. BT1B_CT2] gi|52005203|gb|AAU25145.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580] gi|52349881|gb|AAU42515.1| Slr [Bacillus licheniformis ATCC 14580] gi|317390197|gb|EFV71006.1| slr protein [Bacillus sp. BT1B_CT2] Length = 152 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 12/143 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I +R + + LA AG+ + +K +R R PS E + KI A Sbjct: 2 IGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVH----RNPSVEFLKKISRALKVE 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------PTGNKWNTVGV 120 + +L D R TE++++ L + F + + Sbjct: 58 LKELFDTEVILYRRTEQEDEWRTHLVQAVQAGMNQEELFQFTHRLKQKKKERALYRNREL 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQ 143 ++ ++ + Sbjct: 118 TRANIDEWRALMLEAKEMGLTVK 140 >gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] Length = 143 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 31/136 (22%), Gaps = 6/136 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + LT LA + G+ + K + P + + A + + Sbjct: 5 IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDST-----PDLANAGALAEALDVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPH 127 + L+ + + + Sbjct: 60 LDALVGYDPHGTMLPMPPRGKHLFGTVTVGERWQIVIPKQARELFGIEAGDALLVLGDEE 119 Query: 128 NGIYAIQTQDTRHKTQ 143 G+ ++ + + Sbjct: 120 QGLAILKADEFMDRVS 135 >gi|313898355|ref|ZP_07831892.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956737|gb|EFR38368.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 268 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 5/93 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K+I I ++ T LA K G+ + +K +R +P + + Sbjct: 1 MQQKEIGMQISAARKKLKYTQRELAEKLGVSDKTISKWERGVG-----YPDISLLLPLCR 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + QLL +D + ++ L + Sbjct: 56 ELGIEVSQLLGDEETDTQKQGNEKNLKNLADYA 88 >gi|294102133|ref|YP_003553991.1| hypothetical protein Amico_1144 [Aminobacterium colombiense DSM 12261] gi|293617113|gb|ADE57267.1| hypothetical protein Amico_1144 [Aminobacterium colombiense DSM 12261] Length = 91 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%) Query: 151 YRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVE 208 +++N A +V GD L+ R + K + + S+++ S Y Sbjct: 6 IPDRSTVVVNPAEEVYDGDTALVCFGRQNEWAIKWVYFNKADGSVEIRSAAPQYKPMVFT 65 Query: 209 MSDIE-----WIARI 218 DIE + ++ Sbjct: 66 KEDIELGLFCIVGKV 80 >gi|153004060|ref|YP_001378385.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027633|gb|ABS25401.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5] Length = 68 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + R+ + L+ LA K G+ + + +R R P E+I K Sbjct: 1 MDLLT--RFAGNVRRLRAKKKLSQKALADKVGISVSYVSMLERGQ-----RSPPLETIEK 53 Query: 61 ILAATNETI 69 + A Sbjct: 54 MAKALGVPP 62 >gi|120401822|ref|YP_951651.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954640|gb|ABM11645.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 176 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I E ++ LA KAG+ ++ +R R PS + + +I A Sbjct: 16 QDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRKPSADVLNQIAKALR 70 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L + + ++ + Sbjct: 71 VSAEVLYVRAGILEPSETNEVRDAIVTDTA 100 >gi|298294446|ref|YP_003696385.1| hypothetical protein Snov_4510 [Starkeya novella DSM 506] gi|296930957|gb|ADH91766.1| hypothetical protein Snov_4510 [Starkeya novella DSM 506] Length = 259 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 68/237 (28%), Gaps = 43/237 (18%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ EA+ + E + P+ A AGL+ N + GR R ++ K+ A Sbjct: 3 DELKEAVAKRVEELGIAPTPAAVGAGLERNFINDILQ----GRKRSVRGDNFVKLARALQ 58 Query: 67 ETICQLLDLPFSDG-----------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T +LL+ + I + G F Sbjct: 59 MTPAELLEATTLHSFKGGVVTPVKEEIRVTLSPGKPTPSPIAQARVQGAAQAGTFHRVDE 118 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILI------L 159 ++ V VP +A Q + SM G ++ L Sbjct: 119 LEEDRDEWVNVPRD---EEFPFARQ---LVFDIRGDSMNKLEPVPLPDGSRVVTVAFEDL 172 Query: 160 NSAIQVNCGDRLLIKPR-----TGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMS 210 ++ + + G ++++ + K + + S N + +E Sbjct: 173 DNRVPLQDGMVVIVEQTLADGQVREWSCKQIEIHGEQVEFHPRSTNPRHKPIIIEPD 229 >gi|158339605|ref|YP_001520994.1| hypothetical protein AM1_A0344 [Acaryochloris marina MBIC11017] gi|158309846|gb|ABW31462.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 72 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 4/68 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + E L+ S LARK + T+ + E + ++ N T Sbjct: 1 MSNIKALREDRGLSQSQLARKMQMTETTIRNWEHGRTGVEW----FERVARLCEILNCTP 56 Query: 70 CQLLDLPF 77 L Sbjct: 57 NDLFGYEE 64 >gi|332365977|gb|EGJ43733.1| transcriptional regulator [Streptococcus sanguinis SK1059] Length = 92 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 25 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 79 Query: 68 T 68 Sbjct: 80 N 80 >gi|317128356|ref|YP_004094638.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473304|gb|ADU29907.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 111 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 4/100 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + R + +T + LA KAG+ + + +R PS + + K+ + Sbjct: 2 IGERVKRYRKEAGMTLTELADKAGVAKSYLSALERNIQT----NPSIQFLEKVANVLGLS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 I LL + ++ + + + + G Sbjct: 58 IDYLLKDQVDNVSIVDEDIDKEWVNLVQEAMNSGVSKEEF 97 >gi|327191555|gb|EGE58568.1| putative transcriptional regulator protein, LacI family [Rhizobium etli CNPAF512] Length = 189 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 5/132 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I ++ LT L+ +G+ ++ +R P+ + + Sbjct: 1 MEEQLEQAIGIRIRKLRLEKGLTLDDLSTASGVSRAMISRIERAEA-----SPTASLLAR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I AA ++ +++ + + + V Sbjct: 56 ICAALGLSLSAFFAEERQQASPLARRQDQQVWRDPETGYLRRSVSAPGTASDVDIVEVEF 115 Query: 121 PEIRSPHNGIYA 132 P +A Sbjct: 116 PAGARVSFPPHA 127 >gi|324990569|gb|EGC22505.1| transcriptional regulator [Streptococcus sanguinis SK353] gi|325688320|gb|EGD30339.1| transcriptional regulator [Streptococcus sanguinis SK72] Length = 108 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95 Query: 68 T 68 Sbjct: 96 N 96 >gi|323356598|ref|YP_004222994.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323272969|dbj|BAJ73114.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 197 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 5/107 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + A+ +R L+ L+ KAG+ ++ +R PS +S+ ++ A Sbjct: 14 ETLGAAVRDARKRLGLSVQALSEKAGVSFGLVSQLERGLGN-----PSLQSLQRLAGALG 68 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + QLLD P + ++ I + S + P G Sbjct: 69 IPVAQLLDEPAVPLAVVTRAKRHIMPVAVDAPASQRAVRELLTPRGE 115 >gi|256811069|ref|YP_003128438.1| XRE family transcriptional regulator [Methanocaldococcus fervens AG86] gi|256794269|gb|ACV24938.1| transcriptional regulator, XRE family [Methanocaldococcus fervens AG86] Length = 64 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + H +T LA+ G+ + ++ + PS + KI+ + Sbjct: 3 NRLRELRKEHGITQEELAKALGVTRQTIIAIEKGKYD-----PSLKLALKIVKFFGVKVE 57 Query: 71 QLLDLPF 77 + +L Sbjct: 58 DVFELEE 64 >gi|212693058|ref|ZP_03301186.1| hypothetical protein BACDOR_02565 [Bacteroides dorei DSM 17855] gi|212664344|gb|EEB24916.1| hypothetical protein BACDOR_02565 [Bacteroides dorei DSM 17855] Length = 150 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 6/81 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H + +AID+ L+ S L RK G+ N+ +R + K+ Sbjct: 4 DIKHVHVGQAIDKRRNELGLSKSELGRKIGVPQQHINRILERETMETSR------LIKVS 57 Query: 63 AATNETICQLLDLPFSDGRTT 83 A + L Sbjct: 58 EALDFNFFSLFCPKQHHISAH 78 >gi|150398499|ref|YP_001328966.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030014|gb|ABR62131.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 209 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 23/188 (12%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S + I E + ++ + + LT + LAR+ L P++ +K + + P+ ++I + Sbjct: 14 PRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQM-----SPTYDTILSLA 68 Query: 63 AATNETICQLLDLPFSDGRTTEKK-------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + +L + + + Y P Sbjct: 69 EGLGADVAELFARRQTTTVSGRRTINRAGDGVAHNTDQYDYQMLCTELAHKQFVPLKAII 128 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 S G+ + ++ + L ++ GD Sbjct: 129 KA----NSISRFGGMLSHSGEEFVYVLSGEIELHT------QFYAPTR-LHTGDSCYFDS 177 Query: 176 RTGDIVAK 183 G + K Sbjct: 178 TMGHALLK 185 >gi|295133936|ref|YP_003584612.1| prophage LambdaCh01, repressor protein [Zunongwangia profunda SM-A87] gi|294981951|gb|ADF52416.1| putative prophage LambdaCh01, repressor protein [Zunongwangia profunda SM-A87] Length = 251 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I ++ L+ A L + + E P E+I KI + TI Sbjct: 5 GKNIRKIRNVKKLSQQAFAELFELKRGTLGAYEEERSE-----PRIETIIKIANHFSITI 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSP 126 LL + + + K+ F + E Sbjct: 60 DDLLTQELTVNKLLKFKDDLALQGSFHKEKFAEIPCITPKTEADYILYYDKPHFIEDLPK 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP---LYRKGDILILNSAIQVNCGDR-------LLIKPR 176 + + + + M Y D++I +V+ D L+I Sbjct: 120 LHLPVDPDKEYRAYLISNLEMTNNDKAYCPKDVVI---GEKVDPNDFTKIDTSSLVIALV 176 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G ++ + I L + N +E +I+ + + Sbjct: 177 HGKVLFRKFYY-SSSKIILRANNTNIEDIEIESGEIKEMWHV 217 >gi|317484279|ref|ZP_07943203.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924460|gb|EFV45622.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 272 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H I I + L+ LA+ G+ S K + P + + ++ Sbjct: 3 RKHLNIGGKIQARRKAMGLSQEDLAQLTGVSRQSVTKWETGQS-----APDLDRLVEVSD 57 Query: 64 ATNETICQLLDLPFSDGRTT 83 ++ LL P Sbjct: 58 VLGVSLDFLLREPQQVSSPP 77 >gi|148259560|ref|YP_001233687.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402766|ref|YP_004282847.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401241|gb|ABQ29768.1| putative transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325049627|dbj|BAJ79965.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 203 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 58/191 (30%), Gaps = 17/191 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + RM + LT LAR+AG+ + + ++ + PS S+ KIL + Sbjct: 25 VGARLRRMRQIFGLTQRELARRAGVTNGAISLIEQGRV-----SPSISSLKKILDGIPMS 79 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + L + ++ + F S + + Sbjct: 80 LAEFFTLDLTAPEDVFFTAADLTEIAFDERISFRMVGRRLKDRALQMLHETYSPGADTGE 139 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + ++ + + + + + + G+ + R + Sbjct: 140 AMLRHEGEEAGVIIRGRIV--------VTVGDQERTLGAGEAYYFRSRIPH----RFRNP 187 Query: 189 RGRSIDLMSLN 199 +++S N Sbjct: 188 FDEVCEVISAN 198 >gi|291008215|ref|ZP_06566188.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 16/159 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I A+ R +R L+ + LA++AG+ ++ ++ + PS E+++ + A Sbjct: 25 EIISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGN-----PSVETLWALAVALG 79 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L+D P R + + P G + + + Sbjct: 80 VPFSRLVDPPRPQVRIVRAGQATFVR---SEQSTYAAALLSSCPAGARRDLYLLELEPGG 136 Query: 127 HNGIYA-IQT-------QDTRHKTQDTSMLPLYRKGDIL 157 A I R + S L GD + Sbjct: 137 VRDAQAHIPGTVEHVVLTAGRMRVGPESNLVEIGPGDYV 175 >gi|134098587|ref|YP_001104248.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133911210|emb|CAM01323.1| possible DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 186 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 16/159 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I A+ R +R L+ + LA++AG+ ++ ++ + PS E+++ + A Sbjct: 10 EIISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGN-----PSVETLWALAVALG 64 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L+D P R + + P G + + + Sbjct: 65 VPFSRLVDPPRPQVRIVRAGQATFVR---SEQSTYAAALLSSCPAGARRDLYLLELEPGG 121 Query: 127 HNGIYA-IQT-------QDTRHKTQDTSMLPLYRKGDIL 157 A I R + S L GD + Sbjct: 122 VRDAQAHIPGTVEHVVLTAGRMRVGPESNLVEIGPGDYV 160 >gi|317122090|ref|YP_004102093.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592070|gb|ADU51366.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 216 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + + ++ LAR++G+ ++ + R PS + I +I A Sbjct: 2 EVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPA----RKPSVDVILRIATALGV 57 Query: 68 TICQ 71 ++ + Sbjct: 58 SLTE 61 >gi|288924207|ref|ZP_06418242.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288344443|gb|EFC78937.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 208 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 9/113 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + I + ++ L+ + LAR+AGL + +K ++ P+ +++F I +A Sbjct: 13 HAVVARNIRLLRQQRGLSLAELARQAGLAKQTLSKLEQSSGN-----PTVDTLFSIASAL 67 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +L+ ++ +++ G V+ +G N V Sbjct: 68 GVPVTRLVAEREQIVAV----QRASDVVWQHHDGHEVRLLDHVYGSGVIENYV 116 >gi|308174255|ref|YP_003920960.1| post-exponential-phase response transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307607119|emb|CBI43490.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens DSM 7] gi|328912595|gb|AEB64191.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens LL3] Length = 113 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 4/107 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + LLD + + L+ + F KW Sbjct: 60 VHTLLDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLEYQKW 106 >gi|311111417|ref|ZP_07712814.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311111482|ref|ZP_07712879.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066571|gb|EFQ46911.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066636|gb|EFQ46976.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 112 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H L+ + L++ + + K + E PS+ ++ K+ + + Sbjct: 2 IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAE-----PSSGALAKLAEYFDVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 LL + + EK+ +L + + Sbjct: 57 ADYLLGSDKTSEPKSVDLEKDPVVLSYGGRPVSDEDMDVIKAI 99 >gi|332184077|gb|AEE26331.1| hypothetical protein FN3523_1028 [Francisella cf. novicida 3523] Length = 265 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 74/271 (27%), Gaps = 66/271 (24%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M SH KI + ++ +T LA K G+ + K + P+ + Sbjct: 1 MNM-SHIKI-----ELRKK-GITQKELAEKLGITTNAIQKWFKGET-----SPTMNRYLQ 48 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--------------------LYFPPSGS 100 IL T + T + + + Sbjct: 49 ILDILGITTGEAEMYKLGRTSTGNIIHSQRTVDGDITNLAVSNNKGIVGSNNSNIAFGKN 108 Query: 101 GGFFDSGVFPTGNK---------------------WNTVGVPEIRSPHNGIYAIQTQDTR 139 + P+ + ++V + HN +A + T Sbjct: 109 SNVSINSDAPSNDGSLASIPVIKREDILDFKNAKRIDSVAMKLPADKHNKCFAFEYTGTD 168 Query: 140 HKTQDTSMLPL-----YRKGDILILNSAIQVNC----GDRLLIKPRTGDIVAKVLISRRG 190 + SMLP G + ++ + GD ++ + +VL + Sbjct: 169 MRYDTNSMLPAYSYYSIDDGSKIFVDISKDAINSLTSGDLVVCIAD-NKVNVRVLYNDGY 227 Query: 191 RSIDLMSLNC--CYPVDTVEMSDIEWIARIL 219 + LM LN E+S + + R+ Sbjct: 228 DT-TLMPLNSIAQNKDQNKELSKNKIVGRVF 257 >gi|257792132|ref|YP_003182738.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476029|gb|ACV56349.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 247 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 11/74 (14%) Query: 1 MTSFSHK------KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M+ S K +I + + M + LA + GL + +K +R P Sbjct: 1 MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAES-----SPD 55 Query: 55 TESIFKILAATNET 68 T ++ + + Sbjct: 56 TGNLIALAKLYGVS 69 >gi|269956326|ref|YP_003326115.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305007|gb|ACZ30557.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 145 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I ER L+ + LAR+AG+ P++ + + R S + ++L A Sbjct: 3 NIRHARERAGLSQAELARRAGIAPSNLSAIESGT-----RPASAAMVNRLLDAMGRPSVA 57 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRSP 126 L + T E+ P ++ + S G W+ V +P + S Sbjct: 58 LREHRDEVMATIERLGGSDPRVFGSVARGEDGPGSDIDLLVRAVPGRTWDFVTLPRVLSD 117 Query: 127 HNGI 130 G+ Sbjct: 118 LLGV 121 >gi|73748044|ref|YP_307283.1| hypothetical protein cbdb_B7 [Dehalococcoides sp. CBDB1] gi|73659760|emb|CAI82367.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1] Length = 77 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I + + ER LT A K G+ + N+ + + + + I K+ Sbjct: 1 MKNQADIPRLVQELRERMGLTQEKFAAKLGVTYPTINRWENGRAKPSP--LAMKQIEKLT 58 Query: 63 AATNETICQ 71 E Sbjct: 59 KGLGERGRD 67 >gi|323494352|ref|ZP_08099464.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] gi|323311515|gb|EGA64667.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] Length = 180 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/198 (9%), Positives = 56/198 (28%), Gaps = 32/198 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + L+ LA+++G+ + ++ ++ + PS S+ KIL A Sbjct: 2 DVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVN-----PSVGSLKKILDAIPI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-------KWNTVGV 120 ++ + + + K+ G + G Sbjct: 57 SMGEFFTIE--------IEAKDDIFFTVDQMADLGDGKIKMLLVGAKREGRQLAILREFY 108 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + ++ + + + + + GD + + Sbjct: 109 PPGSDTGPDFLQHEGEEGGVVIRGEIEI--------TVGSKTQVLKAGDSYYFETKKPH- 159 Query: 181 VAKVLISRRGRSIDLMSL 198 ++ +L+S Sbjct: 160 ---RFRNKGKVECELISA 174 >gi|322830791|ref|YP_004210818.1| XRE family transcriptional regulator [Rahnella sp. Y9602] gi|321165992|gb|ADW71691.1| transcriptional regulator, XRE family [Rahnella sp. Y9602] Length = 188 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/145 (8%), Positives = 36/145 (24%), Gaps = 6/145 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H I + + + S A G+ + +R P+ +++K Sbjct: 1 MQELTH-HIGSQLKAVRSERGWSLSQTAEHTGVSKAMLGQIERGES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + N + + L+ P + + + + Sbjct: 55 IASGLNVSFSEFLETPPAQSAALHRHGLLTTFNSDTSGMRVVPLFPFDTTLRMDMFVIDL 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145 + + + + Sbjct: 115 EPGGCSESTPHEAGVIEHVIVIEGE 139 >gi|317488245|ref|ZP_07946813.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] gi|316912657|gb|EFV34198.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + E LT LA G+ + +K +R G P E + + Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGG-----CPDIELLPGLSERLGTP 60 >gi|315651060|ref|ZP_07904094.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486650|gb|EFU76998.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 166 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E I R+ + LT +A+K G+ SF + +R P +++ I A + Sbjct: 3 KSMGENIKRIRKSKGLTQKEVAKKLGISQQSFAQYERIDAI-----PKFKTLQNIADALD 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 ++ ++ D + + + G + G+ Sbjct: 58 VSVGDIIYDGPKDKSRYLIEFTKYLYDHGFKYEYGDESLAAFMGIGD 104 >gi|257791038|ref|YP_003181644.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474935|gb|ACV55255.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 197 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + E LT LA G+ + +K +R G P E + + Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGG-----CPDIELLPGLSERLGTP 60 >gi|315223186|ref|ZP_07865047.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315187618|gb|EFU21372.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 81 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H K+ + + R L + LA+KAG+ + + +R PS K Sbjct: 1 MKGEEHMKLENRLKELRARDRLNQTELAKKAGVSRQTVSLIERGEY-----APSIIIALK 55 Query: 61 ILAATNETICQLLDLPFS 78 I E + + L + Sbjct: 56 IAHIFGENVENVFYLKEN 73 >gi|300117591|ref|ZP_07055374.1| DNA-binding protein [Bacillus cereus SJ1] gi|298725026|gb|EFI65685.1| DNA-binding protein [Bacillus cereus SJ1] Length = 181 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA++A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|291484905|dbj|BAI85980.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 113 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + LLD + + L+ Sbjct: 60 VHTLLDEKHETEYDGQLDSEWEKLVRDA 87 >gi|228967552|ref|ZP_04128578.1| hypothetical phagelike protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228792131|gb|EEM39707.1| hypothetical phagelike protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 177 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 14/171 (8%) Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I + L + + + + E YFP S S G T T Sbjct: 5 IAQALDISINDLFPPTNEVYKANNQIISLVNESDYTYFPTSISAGLPIQVDGMTEMDLET 64 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKP 175 + +P+ G +A + + SM + ++ + ++ D ++ Sbjct: 65 IRIPDSL---MGKWAGREDIFMTRVNGDSMNKVIPHSSLIAVKEVTLEELYDNDMVVFSN 121 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP----VDTVEMSD---IEWIARIL 219 V + + + + Y TV D I+ +++ Sbjct: 122 GCDYCVKRFFNDKENKRLIFRPD--SYDNCFFDYTVSYEDAANIKIHGKVV 170 >gi|254511384|ref|ZP_05123451.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221535095|gb|EEE38083.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 196 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +++ E + + E+ L+ L+ +AG+ + +K + ++ R S +I L Sbjct: 6 EQVAETLRKAREQKGLSQRALSARAGVPQSHISKIENNTVD--LRTSSLTAIAHALD 60 >gi|154686724|ref|YP_001421885.1| SinR [Bacillus amyloliquefaciens FZB42] gi|154352575|gb|ABS74654.1| SinR [Bacillus amyloliquefaciens FZB42] Length = 113 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + LLD + + L+ Sbjct: 60 VHTLLDEKHETEYDGQLDSEWEKLVRDA 87 >gi|153940900|ref|YP_001392913.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936796|gb|ABS42294.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320889|gb|ADG01267.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 220 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 14/217 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65 ++ + I + LT LA+K G+ N+ + + S + K + Sbjct: 3 RVSDKIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGKGINDI 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + L + K K + S + + +P + + Sbjct: 63 GISFEEEVSLEPKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVVGN 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 GI+ Q + K ++ M KGDI ++ + + Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNNKRSVRQ 179 Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217 L G I L +SL + V + DI+ IA+ Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAK 212 >gi|186471163|ref|YP_001862481.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197472|gb|ACC75435.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 189 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 6/136 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I I E + + LA K+G+ +K +R P+ + K+ A Sbjct: 10 QRIGARIRAEREGRGWSLTSLAEKSGVSRAMVHKVERGES-----SPTASLLAKLAGAFG 64 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ LL L + ++ ++ + N + +P Sbjct: 65 MSMSALLALAELEDGRLLRRAEQPLWVDPQSGYVRRHVSPKSASPLNLVE-IDLPPSTEI 123 Query: 127 HNGIYAIQTQDTRHKT 142 A Sbjct: 124 PMPASAYLHSQQLIWV 139 >gi|84686686|ref|ZP_01014578.1| hypothetical protein 1099457000242_RB2654_00590 [Maritimibacter alkaliphilus HTCC2654] gi|84665360|gb|EAQ11838.1| hypothetical protein RB2654_00590 [Rhodobacterales bacterium HTCC2654] Length = 199 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I E++ ER ++ L+ KAG+ + +K + ++ R S + ++L Sbjct: 6 EHIAESLKAARERKGISQRALSAKAGVPQSHISKIENGAVD--LRLSSLVELARVLD 60 >gi|290959392|ref|YP_003490574.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260648918|emb|CBG72032.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 156 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 36/156 (23%), Gaps = 12/156 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGN 113 + A + L ++ E E + Sbjct: 56 VAKALRISAETLYVRAGILDAERDRDEVETRAVILADPTLNERQKQVLLQIYESFRKENG 115 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149 + + + P Sbjct: 116 FEIDIDLGPGAETDPEAPPAPGRAPHAAGDGDDAGP 151 >gi|195873244|ref|ZP_02696881.2| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197264542|ref|ZP_03164616.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|195634360|gb|EDX52712.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197242797|gb|EDY25417.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 185 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 8 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 62 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121 Query: 118 VGVPEIRSPH 127 H Sbjct: 122 TPHKAGVVEH 131 >gi|191639701|ref|YP_001988867.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190714003|emb|CAQ68009.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327383814|gb|AEA55290.1| Transcriptional regulator [Lactobacillus casei LC2W] Length = 185 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + + ++ + +T S LA + + + + + P ++I + Sbjct: 1 MSDLS---LGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQ-----PDLQTICR 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE 89 + + T+ L+ ++ Sbjct: 53 LASYYQLTVDDLIHQQSVPCADDQRPITW 81 >gi|194445981|ref|YP_002040851.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404644|gb|ACF64866.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 178 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHKAGVVEH 124 >gi|118587639|ref|ZP_01545049.1| putative DNA-binding protein [Stappia aggregata IAM 12614] gi|118439261|gb|EAV45892.1| putative DNA-binding protein [Stappia aggregata IAM 12614] Length = 185 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 7/137 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPS 54 M++ + + + N LA++ G+ + ++ +R G+ Sbjct: 1 MSNLDQD-LARRLTDLRRARNWPLEELAKRTGISRATLSRVERGDTSPTANVLGKLASAF 59 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 S+ ++ + + T+ +L+ T + L SG G G P G Sbjct: 60 GLSMAELFGSASSTVERLVPREAQAVWTDPETGYTRRTLTPAASGYRGAMIEGCIPAGAT 119 Query: 115 WNTVGVPEIRSPHNGIY 131 P H + Sbjct: 120 VAYAAPPVPDLEHQLVL 136 >gi|326790508|ref|YP_004308329.1| hypothetical protein Clole_1405 [Clostridium lentocellum DSM 5427] gi|326541272|gb|ADZ83131.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 159 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + ++ LA +GL + + + G+ PS E++ I + + Sbjct: 3 GEKLKQLRKEKKISQKELAELSGLSISYIQQIE----SGKKNNPSLEALTAIAKVLDTPM 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 LLD + + ++ I L + Sbjct: 59 YHLLDESMKEYKDEFYFKQCIDWLRPILIDEPEYASEE 96 >gi|323486025|ref|ZP_08091356.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323400592|gb|EGA92959.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 216 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 6/136 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I ++ + LT L +K G+ + + + E P++E++ ++ ++ Sbjct: 5 GNIIKQLRKEAGLTQGELGKKLGVVKQTISSWENNVSE-----PNSETLSELSKLFGVSV 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-EIRSPHN 128 QL D + K + + VG E + + Sbjct: 60 AQLYDHGVPNIDYANFKMDTPEFVLDFKMRIRDLMEEQKMSEDEFAQRVGFHKEEKDAYL 119 Query: 129 GIYAIQTQDTRHKTQD 144 + + + K Sbjct: 120 YGNKMPSIEDLIKIAG 135 >gi|320106693|ref|YP_004182283.1| XRE family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925214|gb|ADV82289.1| transcriptional regulator, XRE family [Terriglobus saanensis SP1PR4] Length = 71 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I + LT LA G+ + N + G P+ E+ F+I Sbjct: 4 RIRNNIRNLRAEAGLTQQELADLIGVTRQTVNAIE-----GDKYSPTLEAAFRIAEVL 56 >gi|260892045|ref|YP_003238142.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864186|gb|ACX51292.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 118 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + ++ +R L +AR G++ ++ +R + PS E++ K+ Sbjct: 3 RFGDTLKQLRQRMGLRQDDVARMVGVERSTVANWERGVKQ-----PSLETLVKLSQLFGV 57 Query: 68 TICQ 71 ++ + Sbjct: 58 SLDE 61 >gi|257875583|ref|ZP_05655236.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809749|gb|EEV38569.1| predicted protein [Enterococcus casseliflavus EC20] Length = 293 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + + + RHNLT LA + + + +K +R P E++ ++ Sbjct: 2 HESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNG-----LPDIETLVRLADLL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + +LL K E+ + L Sbjct: 57 GTPVEELLKEKKETYYYEYKSERTVLRLPL 86 >gi|257865956|ref|ZP_05645609.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872289|ref|ZP_05651942.1| predicted protein [Enterococcus casseliflavus EC10] gi|257799890|gb|EEV28942.1| predicted protein [Enterococcus casseliflavus EC30] gi|257806453|gb|EEV35275.1| predicted protein [Enterococcus casseliflavus EC10] Length = 293 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + + + RHNLT LA + + + +K +R P E++ ++ Sbjct: 2 HESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNG-----LPDIETLVRLADLL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + +LL K E+ + L Sbjct: 57 GTPVEELLKEKKETYYYEYKSERTVLRLPL 86 >gi|308067835|ref|YP_003869440.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857114|gb|ADM68902.1| Putative HTH-type transcriptional regulator [Paenibacillus polymyxa E681] Length = 115 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + + I + + L+ LA KAG + + +R R S +++ K Sbjct: 1 MSELL-ELVGTRIRDIRKSKGLSQEALAEKAGFNSSYIGFIERAE-----RNISLKNLEK 54 Query: 61 ILAATNETICQ 71 I A N + Q Sbjct: 55 IAKALNVGVYQ 65 >gi|289825657|ref|ZP_06544828.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 185 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 8 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 62 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121 Query: 118 VGVPEIRSPH 127 H Sbjct: 122 TPHKAGVIEH 131 >gi|153815596|ref|ZP_01968264.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|317501623|ref|ZP_07959815.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088574|ref|ZP_08337485.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847027|gb|EDK23945.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|295100105|emb|CBK89194.1| Predicted transcriptional regulator [Eubacterium cylindroides T2-87] gi|316896966|gb|EFV19045.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407531|gb|EGG87031.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] Length = 223 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA K G++ S +K +R +P+ +++ KI+ T Sbjct: 11 LGENIQIIRKHRGMKQQELANKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65 Query: 69 ICQLLDLPFSDGRTTEK 85 +LL + TE Sbjct: 66 PNELLSGEWKYIDHTEP 82 >gi|33866161|ref|NP_897720.1| peptidase S26 family protein [Synechococcus sp. WH 8102] gi|33639136|emb|CAE08142.1| Possible peptidase S26 family protein [Synechococcus sp. WH 8102] Length = 125 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRS 192 + K Q SMLP D +++N + G+ ++ + G + K + Sbjct: 19 GRRQLLKVQGESMLPHLGPEDRILVNQRRRPQPGEVVVAWHPSKPGVRLIKRMHGMDANG 78 Query: 193 IDLMSLNCC 201 + L+ N Sbjct: 79 MHLLGDNPS 87 >gi|88856689|ref|ZP_01131345.1| putative regulatory protein [marine actinobacterium PHSC20C1] gi|88814150|gb|EAR24016.1| putative regulatory protein [marine actinobacterium PHSC20C1] Length = 195 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 5/133 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R + NLT LA+ G+ ++ ++ + R PS E + ++AA + Sbjct: 13 QIAPRLRRARQNKNLTLDDLAQATGISKSTLSRLESGQ-----RKPSLELLLPVVAALSV 67 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + Q++ P +K P T + + Sbjct: 68 PLDQIVTSPRIADPRVAQKSTRADGRMLTPLSQHLGKPQAFKITIAATDGEPTLRTHGGY 127 Query: 128 NGIYAIQTQDTRH 140 IY ++ + Sbjct: 128 EWIYVLEGRLRLV 140 >gi|293414771|ref|ZP_06657420.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185] gi|291434829|gb|EFF07802.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185] Length = 178 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 8/118 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA G+ + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124 >gi|229488922|ref|ZP_04382788.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229324426|gb|EEN90181.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 208 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 5/133 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R+ + N+T + L+ G+ ++ ++ + R PS E + I A Sbjct: 27 QIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGE-----RRPSLELLLPIALAHQV 81 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + QL+ P + + + P T T P++ + Sbjct: 82 PLDQLVAAPQVADPRIQSAPRSVSGRTVLPLTRQPGGLQAFKMTIPASQTEPDPQVHDGY 141 Query: 128 NGIYAIQTQDTRH 140 +Y + + Sbjct: 142 EWLYVLSGRLRLV 154 >gi|329117060|ref|ZP_08245777.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907465|gb|EGE54379.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 183 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ ++ L+ LA++ G+ + + + +P+ ++ KI N + Sbjct: 8 NLIRLRKQKGLSQKELAQELGISSQTISNIENQSA-----YPTFTNLEKIAGFFNASPTD 62 Query: 72 LLDLPFSDG 80 L P Sbjct: 63 LFGTPQQIQ 71 >gi|204927953|ref|ZP_03219154.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323295|gb|EDZ08491.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322634804|gb|EFY31535.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|323243422|gb|EGA27441.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 185 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 8 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 62 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121 Query: 118 VGVPEIRSPH 127 H Sbjct: 122 TPHKTGVIEH 131 >gi|288560390|ref|YP_003423876.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543100|gb|ADC46984.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 113 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 5/79 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + + E L+ S LA G+ ++ + R + + K+ A Sbjct: 2 KKIGQRLQGLRESKGLSQSDLANYLGISQPLLSQIEAGN-----RNLNLSLLDKLCALYG 56 Query: 67 ETICQLLDLPFSDGRTTEK 85 T +L Sbjct: 57 CTDSYILCKDDEYNAVNFS 75 >gi|302523303|ref|ZP_07275645.1| regulatory protein [Streptomyces sp. SPB78] gi|318062276|ref|ZP_07980997.1| regulatory protein [Streptomyces sp. SA3_actG] gi|318080822|ref|ZP_07988154.1| regulatory protein [Streptomyces sp. SA3_actF] gi|302432198|gb|EFL04014.1| regulatory protein [Streptomyces sp. SPB78] Length = 219 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/132 (9%), Positives = 37/132 (28%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + + +T + L+ G+ ++ ++ + R P+ E + + A Sbjct: 36 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESG-----LRRPTLELLLPLARAHRVA 90 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ + P + P + Sbjct: 91 LDELVGTRPVADPRVRAEPIVRHHRRMYPLSRHPGGVQAYRMVIEGGSRDPEPRTHEGYE 150 Query: 129 GIYAIQTQDTRH 140 +Y + + Sbjct: 151 WMYVLHGRLRVV 162 >gi|332653080|ref|ZP_08418825.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518226|gb|EGJ47829.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 208 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 52/190 (27%), Gaps = 10/190 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + R+ + L+ +AR + + +K + E P +++ + T Sbjct: 20 LGENLQRLRKEKGLSQEDVARALFVSRQTISKWETDKAE-----PGVDNLKALADLYEVT 74 Query: 69 ICQ-----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + Q + ++ + + +G G + + Sbjct: 75 LDQLTGRARTGTDSKESHEQTPSDQYRTMALIRLAVWLAVAAAGQLHGGEPFQVLAFAGT 134 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 ++ + L + A Q+ G + I K Sbjct: 135 LGSAAVFLSLWFRSIYVWGGILCGEGLSILASAICTICAEQLASGMISVGLAAMLGIWVK 194 Query: 184 VLISRRGRSI 193 L S+ R + Sbjct: 195 YLTSQSVRQL 204 >gi|220922470|ref|YP_002497772.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947077|gb|ACL57469.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 211 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 70/218 (32%), Gaps = 37/218 (16%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 ++ +R + L+ GL + ++ R + + +I A + Sbjct: 9 QLRDRR-IPQKALSSAIGLSEDAVSRMLSG-----KRTIKADELKRICAFLGVSPP---- 58 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 T + +++ + + G F + ++ +P + P AI Sbjct: 59 ------LTAQLPARDVSYVKVVGEVAAGAFVDMQYVDFVDYD---IPYVADPRWPKEAIT 109 Query: 135 TQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNC---GDRLLIKPRTG---DIVAKVLIS 187 + + S+ R GD +I+ ++ GD ++++ R G + K + Sbjct: 110 ----AYIVRGESINRQARDGDHIIVLDANAAPRPYQLGDWVVVEQRCGDLVETTVKQV-R 164 Query: 188 RRGRSIDLMSLNCC---YPVDTVE---MSDIEWIARIL 219 + +L + V ++ I +L Sbjct: 165 GSEGAWELWPDSNDGRFQRPLVVAGDGGDNVRVIGFVL 202 >gi|156934075|ref|YP_001437991.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] gi|156532329|gb|ABU77155.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] Length = 191 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I E I E + S LA +AG+ +K +R P+ + ++ A Sbjct: 9 NQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAL 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ L+ + + + P+ + P S S V +P Sbjct: 64 GLSMSTLIARAEMNEGRLLR-FADQPVWHDPQSHYLRRHVSPKSDLPLDMVQVELPAGSD 122 Query: 126 PHNGIYAIQTQDTRHKTQ 143 A Q Sbjct: 123 IPMPASAYAFARQLIWVQ 140 >gi|125717610|ref|YP_001034743.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497527|gb|ABN44193.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 70 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 3 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 57 Query: 68 T 68 Sbjct: 58 N 58 >gi|260588066|ref|ZP_05853979.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260541593|gb|EEX22162.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 107 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I A+ + N+T LA K G+ ++ + R PS + I ++ Sbjct: 40 DIIRAMVAARKERNMTQKELAEKTGITQADISRIENGT-----RNPSLDMIKRLAKGMGM 94 >gi|255654357|ref|ZP_05399766.1| DNA-binding protein [Clostridium difficile QCD-23m63] Length = 364 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 59/198 (29%), Gaps = 14/198 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + +T LA G+ S +K + +P + ++ N Sbjct: 5 NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQS-----YPDITFLPQLATYFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T+ +L+ + K F FD + Sbjct: 60 TVDELICYEPQMMKEDINKLYNKLCKDFTAK----PFDEVMIEIREIIKRYYSCFPLIFR 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 G+ + D + L + + + N D + + + +L++ Sbjct: 116 MGLLIVNHYDI---VDEKKRELLIDEALEIFIRIQETCNDIDIC-RQAKNMEATCYILLN 171 Query: 188 RRGRSIDLMSLNCCYPVD 205 + + IDL+ N +P+ Sbjct: 172 QPIQVIDLLQ-NSNFPMI 188 >gi|170739100|ref|YP_001767755.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193374|gb|ACA15321.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ ++ + + H L+ LARKAG+ ++ + + PS ++ +IL Sbjct: 1 MTNDEVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTN-----PSVGALKRILD 55 Query: 64 ATNETICQLL 73 A + + Sbjct: 56 AVPIGLAEFF 65 >gi|170742021|ref|YP_001770676.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196295|gb|ACA18242.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ ++ + + H L+ LARKAG+ ++ + + PS ++ +IL Sbjct: 1 MTNDEVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTN-----PSVGALKRILD 55 Query: 64 ATNETICQLL 73 A + + Sbjct: 56 AVPIGLAEFF 65 >gi|168186644|ref|ZP_02621279.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] gi|169295453|gb|EDS77586.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] Length = 210 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I + NLT S LA+ AG+ + +R R P+ + + I A Sbjct: 2 NLGERIKMLRLEKNLTQSELAKIAGISRVAIGNYERGT-----RIPNIDILLNISKALG 55 >gi|78044374|ref|YP_359408.1| AraC family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996489|gb|ABB15388.1| transcriptional regulator, AraC family [Carboxydothermus hydrogenoformans Z-2901] Length = 257 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ E LT + LA +AG+ P + ++ ++ PS ++I K+ T C Sbjct: 143 LKKLREDMGLTQAELASQAGVSPGLIGQIEQGKVQ-----PSLKTIEKLAEVLGTTPCYF 197 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + E LT + L++KAGL + ++ +R ++ PS ++I KI A N Q Sbjct: 8 IRELREERGLTLNELSKKAGLSISYLSEIERG-----SKKPSLKTIDKIAKALNVNKAQ 61 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + E LT S LA + G+ + ++ +R + PS ++ +I + Sbjct: 74 LGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVN-----PSVATLRRIAEELGVS 128 Query: 69 ICQLLDLPF 77 + L+ Sbjct: 129 VADLMGKEH 137 >gi|73669575|ref|YP_305590.1| XRE family transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72396737|gb|AAZ71010.1| transcriptional regulator, XRE family [Methanosarcina barkeri str. Fusaro] Length = 186 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 15/124 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + LT S LA++AG+ + + ++ P ++ K Sbjct: 1 MQLPTPED----LKKRRNELGLTQSDLAKRAGVSQPLIARIESGDVD-----PRLSTVRK 51 Query: 61 ILAATNETICQLL------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 IL A E + + +E+ L S P G+ Sbjct: 52 ILDAFEEVEKEQQIIIIDLMHSPVIHVSPGDSVEEVVNLMQKYGFSQVPVLDRGIPVGSV 111 Query: 115 WNTV 118 + Sbjct: 112 SEDM 115 >gi|328958145|ref|YP_004375531.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] gi|328674469|gb|AEB30515.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] Length = 180 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 5/100 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + NLT LA + L ++ +R PS E F IL Sbjct: 2 EIGNRIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSV-----PSMEVFFDILEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + D + R ++ + Sbjct: 57 SPKDFFDEKQEEQRVVYTNDEMTVYEDDEKGYEIKWLVPE 96 >gi|147677406|ref|YP_001211621.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146273503|dbj|BAF59252.1| hypothetical transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 255 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E + LT + LA AG+ + ++ ++ PS +++ KI T C Sbjct: 143 LRALREEYGLTQAQLASMAGVTAGLIGQIEQGKVQ-----PSLKTLEKIAEVMGVTPCYF 197 Query: 73 LDLPF 77 + Sbjct: 198 IMESG 202 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E I + E T LAR+ L + ++ +R ++ PS ++I K+ AA N Sbjct: 5 GEQIRALREERGYTLQDLARRTNLSLSYLSEIERG-----SKRPSLKTIDKLAAALN 56 Score = 41.3 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I + N++ LA+ +G+ + ++ +R + +P+ ++ +I A Sbjct: 74 LGDKIRMLRAEKNMSLQELAQASGISLSYLSEIERGTV-----YPALTTLKRIAAGL 125 >gi|325830857|ref|ZP_08164241.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325487264|gb|EGC89707.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 197 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + E LT LA G+ + +K +R G P E + + Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGG-----CPDVELLPGLSERLGTP 60 >gi|264679683|ref|YP_003279590.1| prophage repressor [Comamonas testosteroni CNB-2] gi|262210196|gb|ACY34294.1| putative prophage repressor [Comamonas testosteroni CNB-2] Length = 80 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GDI++++ A++ G ++ D KVL G L + N YP + + Sbjct: 6 IDDGDIIVVDRALRARHGSIVVALLD-NDFTVKVLH-NAGGCFKLRAGNPTYPDIVPKEN 63 Query: 211 DIEWIARIL 219 I ++ Sbjct: 64 QELEIWGVV 72 >gi|172058533|ref|YP_001814993.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991054|gb|ACB61976.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 181 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 5/99 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + LT L + L ++ +R PS E++F +L + Sbjct: 4 IGNKIKNLRLQKGLTQEELGERTDLSKGYISQIEREIS-----SPSIETLFSLLEVLGIS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 D + + ++ + Sbjct: 59 AKDFFDEDTLNQKVVYSQKDVTRYEDPEQGYHVTWLIPE 97 >gi|327398988|ref|YP_004339857.1| helix-turn-helix domain-containing protein [Hippea maritima DSM 10411] gi|327181617|gb|AEA33798.1| helix-turn-helix domain protein [Hippea maritima DSM 10411] Length = 72 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K+ + I ++ L+ LARKA + T+ K + G + PS + K Sbjct: 1 MENNQGNKLGKKIKKLRTGLGLSQDELARKADVPYTTLTKIE----TGVIKKPSVYVVAK 56 Query: 61 ILAATNETICQ 71 I A N TI + Sbjct: 57 IAKALNITIEE 67 >gi|289642892|ref|ZP_06475027.1| putative phage repressor [Frankia symbiont of Datisca glomerata] gi|289507275|gb|EFD28239.1| putative phage repressor [Frankia symbiont of Datisca glomerata] Length = 118 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV-LISRRGRSIDLMS 197 SM P R GD ++ + GD ++ + + K S L S Sbjct: 20 MVSVSGRSMTPTLRDGDACVVLWGMSPRVGDVVVARLPGRGLGVKRAAFVEPDGSWWLRS 79 Query: 198 LN----CCYPVD-TVEMSDIEWIARIL 219 N +V D+ + R++ Sbjct: 80 DNVAAGTDSATFGSVPAEDV--LGRVI 104 >gi|257896190|ref|ZP_05675843.1| peptidase S24 [Enterococcus faecium Com12] gi|293377191|ref|ZP_06623399.1| signal peptidase I [Enterococcus faecium PC4.1] gi|257832755|gb|EEV59176.1| peptidase S24 [Enterococcus faecium Com12] gi|292644211|gb|EFF62313.1| signal peptidase I [Enterococcus faecium PC4.1] Length = 183 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 38/108 (35%), Gaps = 15/108 (13%) Query: 115 WNTVGVPEIRSPHNG--IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + + +G + ++ + SM + ++GD++++ ++ D + Sbjct: 8 IDRFWLIFKYLLVSGFIAFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIV 67 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + G I K +I G + + ++ +++ Sbjct: 68 VFQLADGTIYIKRVIGLPG------------ENVSYQNDQLKINGKVV 103 >gi|16760275|ref|NP_455892.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141958|ref|NP_805300.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213021706|ref|ZP_03336153.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052213|ref|ZP_03345091.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416599|ref|ZP_03349743.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426252|ref|ZP_03359002.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582138|ref|ZP_03363964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|25512933|pir||AG0668 probable DNA-binding protein STY1459 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502570|emb|CAD01720.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137587|gb|AAO69149.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 178 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHKAGVIEH 124 >gi|237725545|ref|ZP_04556026.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436232|gb|EEO46309.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 153 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 6/81 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H + +AID+ L+ S L RK G+ N+ +R + K+ Sbjct: 4 DIKHVHVGQAIDKRRNELGLSKSELGRKIGVPQQHINRILERETMETSR------LIKVS 57 Query: 63 AATNETICQLLDLPFSDGRTT 83 A + L Sbjct: 58 EALDFNFFSLFCPKQHHISAH 78 >gi|229172472|ref|ZP_04300031.1| Transcriptional regulator, MerR [Bacillus cereus MM3] gi|228610943|gb|EEK68206.1| Transcriptional regulator, MerR [Bacillus cereus MM3] Length = 181 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA AG+ P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|160893206|ref|ZP_02073994.1| hypothetical protein CLOL250_00752 [Clostridium sp. L2-50] gi|156865289|gb|EDO58720.1| hypothetical protein CLOL250_00752 [Clostridium sp. L2-50] Length = 493 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 54/167 (32%), Gaps = 15/167 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ + I R+ ++ ++T + LA + G++ + ++ ++ PS + Sbjct: 1 MKKLSTAQLADTIIRLRKQQHMTQAQLAAETGINRSLVSRMEKQDF-----MPSIGQLEA 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK--------EIPLLYFPPSGSGGFFDSGVFPTG 112 + + I +L + K + + + P Sbjct: 56 LGDVLHFDITELFISDLPVKYPSPSPLKIAIAGTGYVGLSIATLLAQHNHVTAVDIIPEK 115 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 I+ + Y + T D +M Y+ D +++ Sbjct: 116 VDMINRHQSPIQDEYIEKYLAEKDLDLTATTDGAM--AYKDADFVVI 160 >gi|317050874|ref|YP_004111990.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945958|gb|ADU65434.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 101 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 8/106 (7%) Query: 1 MTSF---SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 MT F + + + + + + + LT LA+ AG+ ++ + ++ R E+ Sbjct: 1 MTQFFAPTPEYLGKTLQALRKAKGLTQEELAKLAGVKQSTVSHAENNT-----RGMRIET 55 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 ++ +LAA + + + + + + F Sbjct: 56 LYSLLAALDLYLNLRPRQDQARAKEEWQGNSAETFSPQIFADGRRF 101 >gi|257887696|ref|ZP_05667349.1| peptidase S24 [Enterococcus faecium 1,141,733] gi|257823750|gb|EEV50682.1| peptidase S24 [Enterococcus faecium 1,141,733] Length = 183 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 38/108 (35%), Gaps = 15/108 (13%) Query: 115 WNTVGVPEIRSPHNG--IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + + +G + ++ + SM + ++GD++++ ++ D + Sbjct: 8 IDRFWLIFKYLLVSGFIAFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIV 67 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + G I K +I G + + ++ +++ Sbjct: 68 VFQLADGTIYIKRVIGLPG------------ENVSYQNDQLKINGKVV 103 >gi|225388847|ref|ZP_03758571.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme DSM 15981] gi|225045122|gb|EEG55368.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme DSM 15981] Length = 201 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 14/185 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT W I ++ T + +AR+ G ++ +R E PS ++ K Sbjct: 1 MTMN-----WNRIREERKKKGYTLAQVARETGYSIGYISQLERNQKE-----PSLAALRK 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL---LYFPPSGSGGFFDSGVFPTGNKWNT 117 I A + L+ ++ + +++ P + + + Sbjct: 51 IAACLGCSEVYLIMGQENETAVSHSPDQDTPYGPGYILRRDQRVPMKIPEIDTAYSIFTP 110 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 +P+ P + + +T +L +LI ++V+ G + Sbjct: 111 DRLPDNHKPCMTGLFVTLKPGC-WVTETMILHQNMDETVLITEGQLEVHIGTHVYDAGTG 169 Query: 178 GDIVA 182 + Sbjct: 170 DCLYI 174 >gi|302390463|ref|YP_003826284.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] gi|302201091|gb|ADL08661.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] Length = 181 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 7/138 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E I ++ ++ LT L+ GL + ++ + + S+ KI A N Sbjct: 3 NEIAEKISKLRKQKGLTLKELSEMTGLSVSFLSQVENGYS-----SLAITSLKKIADALN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I + + K E + + + SG FP + + Sbjct: 58 VPITEFF--SSYHNHSYHIKLSEQKVFKIEGNSAEYVLLSGEFPKRTLEAMIVYIQPGEG 115 Query: 127 HNGIYAIQTQDTRHKTQD 144 ++ ++ + + Sbjct: 116 LGSKFSHPGEEFVYVLEG 133 >gi|237731580|ref|ZP_04562061.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907119|gb|EEH93037.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 191 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 14/148 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + + LA +AG+ +K +R P+ + ++ A Sbjct: 9 NQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAF 63 Query: 66 NETI--------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 ++ Q L + + L S D + Sbjct: 64 GISMSTLIARAEMQEGKLLRFVDQPVWHDPQSHYLRRHVSPRSDLPIDLVQIELPAGSD- 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + +P Q + Sbjct: 123 IPMPASSYVQARQLIWLQQGELVFVEGD 150 >gi|225019713|ref|ZP_03708905.1| hypothetical protein CLOSTMETH_03666 [Clostridium methylpentosum DSM 5476] gi|224947558|gb|EEG28767.1| hypothetical protein CLOSTMETH_03666 [Clostridium methylpentosum DSM 5476] Length = 83 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K I I ++ +R ++ L+ AGLD T ++K +R R P+ +++FKI Sbjct: 1 MVDTKLIGAVIQQLRQRKGISQEVLSGLAGLDRTHYSKIERG-----LRSPTIDTLFKIG 55 Query: 63 AATNETIC 70 +A Sbjct: 56 SALQMPPH 63 >gi|154174979|ref|YP_001409102.1| hypothetical protein CCV52592_0048 [Campylobacter curvus 525.92] gi|112803024|gb|EAU00368.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 228 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 55/203 (27%), Gaps = 28/203 (13%) Query: 17 AERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + T S L G + ++ K R + +++ K + + + Sbjct: 14 IKELSYTYSDLVNVMGENGDFITESAIKKWFMKNNPIRPTIENIQALSKAIKVPLNELVE 73 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 E P S +D + + + WN Sbjct: 74 QTIFENVSAVKEIPVVGEASC-GIPEPNSYQDYDQKTYCSADIWNE-------------- 118 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG- 190 SM L +GD +I + + GD + + G+ KV Sbjct: 119 ----DIYAVIASGDSMYDLIERGDEVICDPRADILSGDIVHYEFN-GESAIKVYFKEEKF 173 Query: 191 RSIDLMSLNC--CYPVDTVEMSD 211 + + N + + ++D Sbjct: 174 GVVRFVPYNRSGEFKTLSFSVND 196 >gi|88854610|ref|ZP_01129277.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] gi|88816418|gb|EAR26273.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] Length = 73 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K+ I + E LT + LAR+ G+ + ++ P+ E F+I Sbjct: 1 MVKPTKVTNNIRALREAEGLTQAELARRIGVTRQTLIAIEQGRY-----SPTLELAFQIS 55 Query: 63 AATNETICQLLDLP 76 + + P Sbjct: 56 RNFGTGLDDVFHYP 69 >gi|293399884|ref|ZP_06644030.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306284|gb|EFE47527.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 168 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +KI E + + ++ LT A + + ++ + P + + +I Sbjct: 1 MNQQKIGEFLKELRKQKGLTQEQFAEIVNVSNRTVSRWENGNN-----LPDLDILIEISD 55 Query: 64 ATNETICQ 71 + + Sbjct: 56 YYEIDLRE 63 >gi|259047500|ref|ZP_05737901.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035691|gb|EEW36946.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 180 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + LT LA + L ++ + PS ++ F IL Sbjct: 2 EIGHQLRALRIQKGLTQEELAERTDLSKGYISQLENDLS-----SPSMDTFFDILEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 D + T ++E + + + + Sbjct: 57 PAADFFDEGPEEALTIYREEDMTMMEDAKHHTTVTWLNPD 96 >gi|225575279|ref|ZP_03783889.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] gi|225037475|gb|EEG47721.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] Length = 341 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/107 (10%), Positives = 27/107 (25%), Gaps = 6/107 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFK 60 +KI + +++ + LA K G+ S +K + E Sbjct: 1 MLLSEKILT----LRKKNGWSQEELAEKCGVSRQSISKWEGNLSTPELSKIVLLSELFQV 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + Q ++ E + + + + Sbjct: 57 STDYLLKEDVQPQTDTDAELPPMEAPSHSLRQVTLAEATAFIQAREQ 103 >gi|116496181|ref|YP_807915.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239630630|ref|ZP_04673661.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067783|ref|YP_003789806.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116106331|gb|ABJ71473.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526913|gb|EEQ65914.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440190|gb|ADK19956.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + + ++ + +T S LA + + + + + P ++I + Sbjct: 1 MSDLS---LGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQ-----PDLQTICR 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE 89 + + T+ LL ++ Sbjct: 53 LASYYQLTVDDLLHQQSVPCADDQRPITW 81 >gi|324993316|gb|EGC25236.1| transcriptional regulator [Streptococcus sanguinis SK405] gi|325694019|gb|EGD35937.1| transcriptional regulator [Streptococcus sanguinis SK150] gi|327461585|gb|EGF07916.1| transcriptional regulator [Streptococcus sanguinis SK1] gi|327473309|gb|EGF18729.1| transcriptional regulator [Streptococcus sanguinis SK408] gi|327489444|gb|EGF21237.1| transcriptional regulator [Streptococcus sanguinis SK1058] Length = 108 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95 Query: 68 T 68 Sbjct: 96 N 96 >gi|291534410|emb|CBL07522.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 242 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 12/120 (10%) Query: 3 SFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + +I E I ++ + L+ + LA+ G+ T + + + P TES K+ Sbjct: 1 MLTNQDEIRERIIQIRKERGLSQNQLAKDFGISRTHYCNVENG------KKPVTESFLKV 54 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 LA+ + + + + + F + + P Sbjct: 55 LASGYKIPMEAFIPNENGDLMQYCECTNDFVNAIIDEYFNSFEIRKYY-----IDEYEQP 109 >gi|297560986|ref|YP_003679960.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845434|gb|ADH67454.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 194 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 9/140 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IFKILAAT 65 + + + RH +T + L+ G+ ++ ++ + R P E + K Sbjct: 12 VGPRLRALRHRHGITLTALSETTGIAVSTLSRLESGQ-----RRPGLELLLPLAKAYNVP 66 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + ++ + G V P G + P Sbjct: 67 LDELVGAPANGDPRVYPRPTVRNGMTVIPLSRNPGGLQAFKQVLPAGP-DDLEPDPRSHE 125 Query: 126 PHNGIYAIQTQDTRHKTQDT 145 ++ +Y + + Sbjct: 126 GYHWLYVLSGRLRLVLGDQD 145 >gi|269957698|ref|YP_003327487.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306379|gb|ACZ31929.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 102 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 25/54 (46%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 H+K+ +++ R ++H LT + +A + G+ + +R+ ++ Sbjct: 23 HEKLLDSLVRFRKKHGLTQADVAERMGVSQPTVAAFERYDANPTLSTIRRYALA 76 >gi|226308038|ref|YP_002767998.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187155|dbj|BAH35259.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 195 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 5/133 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R+ + N+T + L+ G+ ++ ++ + R PS E + I A Sbjct: 14 QIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGE-----RRPSLELLLPIALAHQV 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + QL+ P + + + P T T P++ + Sbjct: 69 PLDQLVAAPQVADPRIQSAPRSVSGRTVLPLTRQPGGLQAFKMTIPASQTDPDPQVHDGY 128 Query: 128 NGIYAIQTQDTRH 140 +Y + + Sbjct: 129 EWLYVLSGRLRLV 141 >gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica ATCC 39073] Length = 178 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 7/142 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I ++ ++ +A K GL + ++ +R + PS S+ KI A + Sbjct: 2 LGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLAD-----PSITSLRKIAEALDIP 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I L P K ++ +L FP S S + + + + Sbjct: 57 IFYFLLNPEDHSPVVRKDQR--KVLRFPQSHLTYELLSPDLNRNMEVMMARLEPGAASCD 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPL 150 A ++ Q + + Sbjct: 115 EPLAHPGEECIVVLQGVMEIDI 136 >gi|325685380|gb|EGD27486.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 122 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + R ++ LA G+ + + + + P +++ KI + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVEKIANIFGVS 60 Query: 69 IC 70 Sbjct: 61 RN 62 >gi|167549918|ref|ZP_02343676.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325107|gb|EDZ12946.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 178 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHKAGVIEH 124 >gi|325690086|gb|EGD32090.1| transcriptional regulator [Streptococcus sanguinis SK115] Length = 108 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95 Query: 68 T 68 Sbjct: 96 N 96 >gi|257439609|ref|ZP_05615364.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197976|gb|EEU96260.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 212 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + EAI + LT L+ + G+ T +K +R PS ++ ++ A Sbjct: 149 VIEAILAARKESGLTQQQLSERTGIAQTDISKLERGNGN-----PSLRTLQRLAAGMGM 202 >gi|322614855|gb|EFY11780.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619297|gb|EFY16177.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623108|gb|EFY19950.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628399|gb|EFY25187.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322638630|gb|EFY35325.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640981|gb|EFY37628.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645436|gb|EFY41964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651679|gb|EFY48051.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654419|gb|EFY50741.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661261|gb|EFY57487.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665035|gb|EFY61223.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667779|gb|EFY63939.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671809|gb|EFY67930.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677145|gb|EFY73209.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680191|gb|EFY76230.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685379|gb|EFY81375.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194734|gb|EFZ79923.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199893|gb|EFZ84981.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204415|gb|EFZ89423.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205808|gb|EFZ90771.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213863|gb|EFZ98638.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218217|gb|EGA02928.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219101|gb|EGA03605.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223909|gb|EGA08207.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231997|gb|EGA16104.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234524|gb|EGA18611.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237976|gb|EGA22035.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323246445|gb|EGA30427.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253730|gb|EGA37557.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259005|gb|EGA42655.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260789|gb|EGA44393.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266543|gb|EGA50030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271267|gb|EGA54694.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 178 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHKTGVIEH 124 >gi|150398657|ref|YP_001329124.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030172|gb|ABR62289.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 197 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 13/131 (9%) Query: 1 MTSFSHKKIWEAID--------RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 M S + + +D + +LT LA +AG+ ++ +R Sbjct: 1 MQSLIMENLGSQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEA-----S 55 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 P+ + + ++ +A T+ L S+ +++ + + Sbjct: 56 PTAQLLARLCSALGTTLSALFASGVSEASPLARRQDQRLWRDPESGYLRRSVSPEGVGSP 115 Query: 113 NKWNTVGVPEI 123 V P Sbjct: 116 IDIVEVEFPPG 126 >gi|269928755|ref|YP_003321076.1| hypothetical protein Sthe_2842 [Sphaerobacter thermophilus DSM 20745] gi|269788112|gb|ACZ40254.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM 20745] Length = 372 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 38/158 (24%), Gaps = 7/158 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + +R L+ S LA + GL S +R P ++ I I Sbjct: 14 RLTLARKRRGLSISALAERVGLSRRSIFNYERGRSV-----PGDHTLATIAQTLGFPITF 68 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSPHNGI 130 + + + + + + + +P + P Sbjct: 69 FFGNDIEELSPDAVSFRAMSKMTAAQRDMALAEGALALLIDSWIDERFELPPVDLPDLSH 128 Query: 131 YAIQTQ-DTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 + R L+ + ++V Sbjct: 129 ETDPETAAIALRRYWGCGEWPIRNMVHLLESKGVRVFS 166 >gi|269468586|gb|EEZ80235.1| hypothetical protein Sup05_0706 [uncultured SUP05 cluster bacterium] Length = 131 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I I + E L+ LA K G+ ++ ++ + + PS +++ K+ N Sbjct: 2 KSIAIRIKQSRELKGLSQKELADKIGVSSSAISQYES--TSYFHSEPSVKNLIKLTKVLN 59 Query: 67 ETICQ 71 + Sbjct: 60 VSFEW 64 >gi|227549950|ref|ZP_03979999.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227077966|gb|EEI15929.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] Length = 143 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTESIFKILAATNE 67 + E + + E L+ LA AG+ + + +R R+ P+ ++++I A + Sbjct: 17 LAERLRALREMRGLSQRRLAELAGVSRSLISNLERNQYNTARSADPTLSTVYRIAHALHV 76 Query: 68 TI 69 Sbjct: 77 PP 78 >gi|194735253|ref|YP_002114629.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300747|ref|ZP_02660781.2| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194710755|gb|ACF89976.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291093|gb|EDY30446.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 185 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 8 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 62 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121 Query: 118 VGVPEIRSPH 127 H Sbjct: 122 APHKAGVIEH 131 >gi|14251159|ref|NP_116527.1| cI repressor [Lactococcus phage BK5-T] gi|928836|gb|AAA98587.1| cI repressor [Lactococcus phage BK5-T] gi|26005556|emb|CAC80176.1| cI repressor [Lactococcus phage BK5-T] Length = 297 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 4/133 (3%) Query: 90 IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSML 148 + Y P G G + V + P + + SM Sbjct: 160 NTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSME 219 Query: 149 PLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 P G +++ + V G ++ K + + L+S+N + Sbjct: 220 PKIPYGAYVLIEAVPDVTDGTIGAVLFHDDCQATLKKVYHEID-CLRLVSINKEFKDQFA 278 Query: 208 EMSD-IEWIARIL 219 + I + + Sbjct: 279 TQDNPAAVIGQAV 291 >gi|328554201|gb|AEB24693.1| transcriptional regulator SinR [Bacillus amyloliquefaciens TA208] Length = 111 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 4/107 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + LLD + + L+ + F KW Sbjct: 58 VHTLLDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLEYQKW 104 >gi|322388685|ref|ZP_08062284.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140474|gb|EFX35980.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 113 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + ++ +LT LA++ G+ +S+ +R + P+ E++ KI + + Sbjct: 5 ERLKELRKQAHLTQVELAKRLGIGQSSYADWERG-----KKKPTQENLVKIAQILDVS 57 >gi|297158498|gb|ADI08210.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 159 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGTLGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L + + ++ Sbjct: 56 LAKALRISAETLYVQAGILDERERDETETRSVI 88 >gi|260906368|ref|ZP_05914690.1| hypothetical protein BlinB_13653 [Brevibacterium linens BL2] Length = 180 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 11/137 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + E +T + L+R AG+ ++ +R G + + I K Sbjct: 2 GALIRSLRESAGMTLTDLSRMAGVSQGLLSQIERGR--GNPAYLTLLKIAKAFDVPVGRF 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPL--------LYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 P + K +++ + L P P G +V Sbjct: 60 FGSGGEPADNRVVRADKRRQLQVTDRGLVYELLTPTMNGQLLVLKARIPAGYSNESVPF- 118 Query: 122 EIRSPHNGIYAIQTQDT 138 ++ ++ Sbjct: 119 NHHRAEECLFVLEGTCY 135 >gi|261366338|ref|ZP_05979221.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571941|gb|EFB77476.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 399 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ L+ LA + G+ + K ++ PS +++ + AA + + Sbjct: 3 LGENIQAARKKKGLSQEALAEQVGVSRQALGKWEKDTA-----LPSLDNLQALAAALDVS 57 >gi|332798069|ref|YP_004459568.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695804|gb|AEE90261.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 50/158 (31%), Gaps = 8/158 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + +T LA KA + + ++ +R PS ++ I A + + Sbjct: 12 YSRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLAN-----PSINTMKLIANALDVPL 66 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSPHN 128 + D R+ + +Y P S + G + + S + Sbjct: 67 FKFFMEEEDDIRSQVVTPENRRRVYLPDSNGVIYELLTPDLAGTIEFCQLTLEPYMSTSD 126 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + ++ T+ L +I+ + + Sbjct: 127 TPMGHEGEEVAIVISGTAEL--ILDDSKIIMEAGDSIR 162 >gi|323483037|ref|ZP_08088431.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] gi|323403666|gb|EGA95970.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] Length = 129 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +T LA K G+ + +K +R +P S+ K+ ++ QL Sbjct: 3 IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLS-----YPDVNSLPKLAGIFGISVDQL 57 Query: 73 LDLPFSDGRTTEKKEKEIPLLYF 95 + + +DG ++ + Sbjct: 58 MQIKTNDGPVNDRPVANRIIPIV 80 >gi|291525173|emb|CBK90760.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Eubacterium rectale DSM 17629] Length = 85 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 M P + G+I ++ + G+ + + K L + L+SLN Y Sbjct: 1 MEPEFHSGEIAWVSQQDTLCDGEIGI-FGLNNEAYIKKLKRY-ADRLYLVSLNSKYSPIE 58 Query: 207 VEMSD 211 ++ SD Sbjct: 59 IKESD 63 >gi|291294894|ref|YP_003506292.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290469853|gb|ADD27272.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 238 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 31/221 (14%) Query: 2 TSFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 S + + + + E+ L+ LA AG+ P+ K ++ + R S Sbjct: 9 ASLTPENVTPDWGRLLQTRREKLGLSREALALAAGVSPSLIAKLEQGNHD--LRDVSVGR 66 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +L + L T PL Y+ + T + ++T Sbjct: 67 LHALLRTLHLPSIDFLLGEGPTEEFTPSAPGITPLPYYSSLTLACAGEEA--STRSHFDT 124 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 +P S N AI QD S +G +L++ L+ Sbjct: 125 RLLPTRPSYTNFFLAILEQDVL-----RSEDLSLVEGSVLVVER-KPARERGIALLGFVE 178 Query: 178 GDIVAKV--LISRRGR------------SIDLMSLNCCYPV 204 + L L+ P Sbjct: 179 E---IRRPLLYRLPPEPRLVRPVSGMGAVYWLLPDGSLQPP 216 >gi|28199642|ref|NP_779956.1| hypothetical protein PD1771 [Xylella fastidiosa Temecula1] gi|28057757|gb|AAO29605.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 141 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + + R+ E L+ LA +G+ S N +G ++ P +I K Sbjct: 16 MNSLAIRAVADNVRRLLEARRLSQKELAALSGVSQKSINDLLNYGGT-VSKEPRLGTIEK 74 Query: 61 ILAATNETICQ 71 + Q Sbjct: 75 LAKGFGIATWQ 85 >gi|325570037|ref|ZP_08145962.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] gi|325156865|gb|EGC69036.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] Length = 293 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + + + RHNLT LA + + + +K +R P E++ ++ Sbjct: 2 HETLSKKLKDYRSRHNLTQKELAARLFVSDKAISKWERGNG-----LPDIETLVRLADLL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + +LL K E+ + L Sbjct: 57 GTPVEELLKEKKETYYYEYKSERRVLRLPL 86 >gi|16079517|ref|NP_390341.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|221310384|ref|ZP_03592231.1| SinR [Bacillus subtilis subsp. subtilis str. 168] gi|221314708|ref|ZP_03596513.1| SinR [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319631|ref|ZP_03600925.1| SinR [Bacillus subtilis subsp. subtilis str. JH642] gi|221323907|ref|ZP_03605201.1| SinR [Bacillus subtilis subsp. subtilis str. SMY] gi|296333382|ref|ZP_06875835.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675112|ref|YP_003866784.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|321311945|ref|YP_004204232.1| transcriptional regulator SinR [Bacillus subtilis BSn5] gi|134504|sp|P06533|SINR_BACSU RecName: Full=HTH-type transcriptional regulator sinR gi|4389349|pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX gi|143547|gb|AAA22757.1| Sin regulatory protein (ttg start codon) [Bacillus subtilis] gi|1303886|dbj|BAA12542.1| SinR [Bacillus subtilis] gi|2634895|emb|CAB14392.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|296149580|gb|EFG90476.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413356|gb|ADM38475.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|320018219|gb|ADV93205.1| transcriptional regulator SinR [Bacillus subtilis BSn5] Length = 111 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + LLD + + L+ Sbjct: 58 VHTLLDEKHETEYDGQLDSEWEKLVRDA 85 >gi|319940112|ref|ZP_08014466.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus 1_2_62CV] gi|319810826|gb|EFW07153.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus 1_2_62CV] Length = 169 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + + + LA K + S +K + + + KI T Sbjct: 2 QINKRIFELRKERGWSQDQLAEKVNVSRQSISKWES--AQALPEIEKVIELSKIFQVT 57 >gi|311069063|ref|YP_003973986.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] gi|310869580|gb|ADP33055.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] Length = 111 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLKKVSAVLDVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + LLD + + L+ Sbjct: 58 VHTLLDEKHETEYDGQLDSEWEKLVRDA 85 >gi|325833019|ref|ZP_08165646.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485736|gb|EGC88201.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 242 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + M + LA + GL + +K +R P T ++ + Sbjct: 14 EIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAES-----SPDTGNLIALAKLYGV 68 Query: 68 TICQ 71 ++ Sbjct: 69 SLDD 72 >gi|294790815|ref|ZP_06755973.1| DNA-binding protein [Scardovia inopinata F0304] gi|294458712|gb|EFG27065.1| DNA-binding protein [Scardovia inopinata F0304] Length = 373 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 +I I ++ +T LA G+ + +K + Sbjct: 5 QIGRNISQLRREKGITQEELAEYLGVSKPAVSKWESGQS 43 >gi|320008611|gb|ADW03461.1| nickel-type superoxide dismutase maturation protease [Streptomyces flavogriseus ATCC 33331] Length = 145 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTG 178 PE A + + SM+P GD+L++ V GD ++++ + Sbjct: 2 PEPAEEPWSGRAARRPFQVVEVTGPSMVPTLYHGDLLLVQRGAPVRPGDVVILRHPLQQD 61 Query: 179 DIVAKVLISRRGRSIDLMSLNC 200 +V K RR ++ N Sbjct: 62 LLVVKRASERRDGGWWVLGDNS 83 >gi|154502629|ref|ZP_02039689.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC 29149] gi|153796821|gb|EDN79241.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC 29149] Length = 125 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 HK+I I + E++N + + LA + L + + + R S ESI +I+ A Sbjct: 10 HKQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENA-----KRKASLESIIRIVNAL 64 Query: 66 NETICQLLDLPFSDGRTTE 84 T+ +LL T Sbjct: 65 GITVDELLAGVQLHNPTAY 83 >gi|153814290|ref|ZP_01966958.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC 27756] gi|145848686|gb|EDK25604.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC 27756] Length = 125 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 HK+I I + E++N + + LA + L + + + R S ESI +I+ A Sbjct: 10 HKQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENA-----KRKASLESIIRIVNAL 64 Query: 66 NETICQLLDLPFSDGRTTE 84 T+ +LL T Sbjct: 65 GITVDELLAGVQLHNPTAY 83 >gi|56750781|ref|YP_171482.1| transcriptional regulator [Synechococcus elongatus PCC 6301] gi|56685740|dbj|BAD78962.1| transcriptional regulator [Synechococcus elongatus PCC 6301] Length = 132 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + +R L+ + LA G+DP + +R + K+ A + + Sbjct: 54 NIAALRKRTGLSQTQLANIVGVDPVTIRNWERGRSGLDW----FVKLAKLCEALDCSPRD 109 Query: 72 LLDLPFSDGRTTEKKEKE 89 L+ P S+ + + E Sbjct: 110 LVKDPDSESKKVPRTVNE 127 >gi|313124538|ref|YP_004034797.1| transcriptional regulator (xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281101|gb|ADQ61820.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 122 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + R ++ LA G+ + + + + P +++ KI + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVEKIANIFGVS 60 Query: 69 IC 70 Sbjct: 61 RN 62 >gi|308186159|ref|YP_003930290.1| hypothetical protein Pvag_0639 [Pantoea vagans C9-1] gi|308056669|gb|ADO08841.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 187 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/167 (9%), Positives = 44/167 (26%), Gaps = 11/167 (6%) Query: 1 MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST---- 55 MT + +++ + + + + L+ G+ + ++ +R + Sbjct: 1 MTELNTEQRLAVRLAELRLQRGWSLDELSVATGISRATLSRIERSETSPTAALLNRLCVA 60 Query: 56 --ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 ++ ++L+ E L+ + + P G G Sbjct: 61 YGLTMSRLLSEVEEESRLLVRNEQQPVWQDDASGFVRRNISPPAVHFRCELVEGKLRPGA 120 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + + P + S + GD L + Sbjct: 121 RIDYDAPPIQGLEQHIWLREGG----LTVTMGSQAWTLQPGDCLRFH 163 >gi|260890727|ref|ZP_05901990.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260859605|gb|EEX74105.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 203 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 48/191 (25%), Gaps = 11/191 (5%) Query: 1 MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + E + + ++ NLT GLA K G+ K ++ PS E++ Sbjct: 1 MAKTKFKENFKEILKELRKKKNLTQRGLAEKTGISLAMITKYEQGLNT-----PSIENLR 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + +I L+ R + E + D + Sbjct: 56 VLADFFKVSIRNFLEEDRDRDRVFKVFLSEEEASIDIENYDSSTNDKKFLSISKGRQYIY 115 Query: 120 VP---EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIK 174 + ++ D + + + D + Sbjct: 116 HILKFLEAVGFEIYIDEKQNIFNIRSSDPKYIMNIYWTINNLQFQIQFLRNIIIDYSYMF 175 Query: 175 PRTGDIVAKVL 185 + D K + Sbjct: 176 FKDMDNHIKKI 186 >gi|182420050|ref|ZP_02951284.1| DNA-binding protein [Clostridium butyricum 5521] gi|237669498|ref|ZP_04529478.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376087|gb|EDT73674.1| DNA-binding protein [Clostridium butyricum 5521] gi|237654942|gb|EEP52502.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 222 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 10/216 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + E+ LT LA+K G+ N+ + + + K+L A Sbjct: 3 RVGENIKKAREKSGLTVKALAKKLGVAEKYLNEVEMGRKVAPESF--IDKAAKVLKADLN 60 Query: 68 T------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L++ + ++K + S + +P Sbjct: 61 DISMVVTDNDLMEEKKTFKELPKRKNDSNEVWTDAFSSVLRNVPIYNYSLTKNNGNKEMP 120 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + G Q + + +D M+ L ++ + + G Sbjct: 121 VHSNKIEGY--PQDKVFYIQIEDDEMIGFRMLKGDLAFAHIVKELNNNGFFLIEYNGKRK 178 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + + + L+S + +T+E+ DI IA+ Sbjct: 179 IRQVKILGNSKVLLVSNSGSLLTETMEVRDINVIAK 214 >gi|294632875|ref|ZP_06711434.1| DNA-binding protein [Streptomyces sp. e14] gi|292830656|gb|EFF89006.1| DNA-binding protein [Streptomyces sp. e14] Length = 190 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 10/179 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I R + + LA ++GL ++ +R PS SI+KI A + Sbjct: 13 VGSVIRGHRRRLGVPMAELAARSGLSQPFLSQLERGLTT-----PSLASIYKIADALSLP 67 Query: 69 ICQLLDLPFSDGRTTEKK-EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L + ++ + I + + G + P Sbjct: 68 PGIFLRPSSTSDTVAHEEDPQVIRVTEGTGQFAHVLIPGGQSDVMEAYEQHFTPGQ--GE 125 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVL 185 G + +D + + + R + + L + + GD G+ A+ L Sbjct: 126 RGWFEHTGEDFIYVLEGE-VALELRGEEPIRLRAGQSAHHRGDVPHRCRLVGETAARTL 183 >gi|213857689|ref|ZP_03384660.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 178 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHKAGVIEH 124 >gi|149195750|ref|ZP_01872807.1| hypothetical protein LNTAR_17698 [Lentisphaera araneosa HTCC2155] gi|149141212|gb|EDM29608.1| hypothetical protein LNTAR_17698 [Lentisphaera araneosa HTCC2155] Length = 726 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 19/101 (18%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIK-------PRTGDIVAKV 184 + SM P + + + +L G + K Sbjct: 620 QDMFVLRVVGKSMEPKIPDNSLCVFRKGSALAGSRQNRIMLFYLHDDSDPNDGGRLTVKK 679 Query: 185 LISRRG--------RSIDLMSLNCCYPVDTVEM-SDIEWIA 216 S++ SI L +LN Y + I I Sbjct: 680 YHSQKSQTEEGWQHGSISLQALNPDYQNIEISEGEQISVIG 720 >gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 101 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 6/99 (6%) Query: 1 MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M H + + I + + +T LA K G+ ++ +R + + Sbjct: 1 MKMKQDHLLVGKRIQKRRKELGMTAVKLAEKIGISQQQLSRYERGINR-----INLSHLV 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 +I + I + + + Sbjct: 56 QIASILETPINWFFLDCSYPASNNSINKLTDQYIPIAEA 94 >gi|331270313|ref|YP_004396805.1| signal peptidase I [Clostridium botulinum BKT015925] gi|329126863|gb|AEB76808.1| signal peptidase I [Clostridium botulinum BKT015925] Length = 174 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPR 176 +P + ++ + + K TSM P + GD ++ ++S ++ GD ++ + Sbjct: 12 IPIGLALFLALFIWKFIGFQVKVPSTSMYPTIKPGDHILITRVHSEKSLHRGDIVVFYSK 71 Query: 177 -TGDIVAKVLISRRGRSIDLMSL 198 + + K L+ G + + S Sbjct: 72 ERNETMIKRLMGLPGDKVSITSD 94 >gi|320160947|ref|YP_004174171.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] gi|319994800|dbj|BAJ63571.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] Length = 206 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + E N++ LAR +GL + + +R PS ++ K+ A Sbjct: 12 DVGQRLRALREERNISIRALARLSGLSANALSMIERGMT-----SPSVSTLNKLAIALKV 66 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + +K E + F G Sbjct: 67 PVTAFFRTMPVKEAVVFRKASERTRIPFLRGMMEGLGGEHFI 108 >gi|294630087|ref|ZP_06708647.1| PbsX family transcriptional regulator [Streptomyces sp. e14] gi|292833420|gb|EFF91769.1| PbsX family transcriptional regulator [Streptomyces sp. e14] Length = 230 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 11 MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 65 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + A + L ++ E E + Sbjct: 66 VAKALRISAETLYVRAGILDAERDRDEVETRAVILAD 102 >gi|260892586|ref|YP_003238683.1| helix-turn-helix domain protein [Ammonifex degensii KC4] gi|260864727|gb|ACX51833.1| helix-turn-helix domain protein [Ammonifex degensii KC4] Length = 349 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I L+ LA K G+ + +K +R P + + ++ A Sbjct: 10 QIGLRIKEARLSRGLSLRALAEKVGVSAQAISKYERGLDI-----PGSGVLLRLAEALGV 64 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 + + +++ Sbjct: 65 KWEYFIRPRRVECLEPAYRKRS 86 >gi|167917954|ref|ZP_02505045.1| helix-turn-helix protein [Burkholderia pseudomallei BCC215] Length = 107 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 4/88 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + LT LA AG+ + + + + PS E + K+ Sbjct: 4 RLGAKLRELRKEKGLTLEKLAELAGMSKSYVWELENRESQ----RPSAEKLTKLADVLGV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 ++ + E Sbjct: 60 AASYFIEEDVRKPEERHRDEAFFRNYKT 87 >gi|327468930|gb|EGF14402.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 108 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95 Query: 68 T 68 Sbjct: 96 N 96 >gi|257898827|ref|ZP_05678480.1| peptidase S24 [Enterococcus faecium Com15] gi|293570270|ref|ZP_06681339.1| signal peptidase I [Enterococcus faecium E980] gi|257836739|gb|EEV61813.1| peptidase S24 [Enterococcus faecium Com15] gi|291609677|gb|EFF38938.1| signal peptidase I [Enterococcus faecium E980] Length = 183 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 34/91 (37%), Gaps = 13/91 (14%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + ++ + SM + ++GD++++ ++ D ++ + G I K +I Sbjct: 25 AFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIKRVIGL 84 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G + + ++ +++ Sbjct: 85 PG------------ENVSYQNDQLKINGKVV 103 >gi|260589804|ref|ZP_05855717.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] gi|260539845|gb|EEX20414.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] Length = 336 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 5/90 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +R + LA K G+ S +K + G P I K+ + Sbjct: 3 LADKIVNLRKRAGWSQEELAEKMGVSRQSISKWE-----GAQSVPDMNRILKLSEVFCVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 LL + +E L Sbjct: 58 TDYLLRDDIEEVPCIVNPLEEAEPLEDSKG 87 >gi|37783322|gb|AAP44573.1| unknown protein [Lactobacillus sakei] Length = 165 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + L+ + LA K G+ + + +R R+P+ ES+ K + T Q Sbjct: 6 KEMGLSQTELAEKIGVQKQTISNIERGI-----RYPTFESLEKFATVFHATPIQ 54 >gi|170020794|ref|YP_001725748.1| CI repressor [Escherichia coli ATCC 8739] gi|169755722|gb|ACA78421.1| CI repressor [Escherichia coli ATCC 8739] Length = 189 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 53/210 (25%), Gaps = 40/210 (19%) Query: 12 AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI+RM E + T L G+ ++ + R E + + T ++ Sbjct: 10 AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L S + E+ G + Sbjct: 63 NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPS 108 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + G ++ G+I + + Sbjct: 109 TFKKP------FVITDKNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 154 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ D+E I +I+ Sbjct: 155 GGRIFVEGGNRAF---ECKIEDVEIIGKII 181 >gi|29829529|ref|NP_824163.1| signal peptidase protein [Streptomyces avermitilis MA-4680] gi|29606637|dbj|BAC70698.1| putative signal peptidase protein [Streptomyces avermitilis MA-4680] Length = 144 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLM 196 + SM+P + GD L+L +V GD ++++ +V K + RR ++ Sbjct: 19 AAEVTGPSMVPTLQHGDRLLLQYGARVRPGDIVVLRHPFQQDLLVVKRAVERREGGWWVL 78 Query: 197 SLNC 200 N Sbjct: 79 GDNP 82 >gi|225028123|ref|ZP_03717315.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353] gi|224954593|gb|EEG35802.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353] Length = 178 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 48/176 (27%), Gaps = 29/176 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + + LT LA +A L ++ +R PS ++ +L Sbjct: 2 ELGEKIKELRNKQGLTQEELADRAELSKGFISQLERDMT-----SPSIATLEDLLQCLGT 56 Query: 68 T----------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 T Q++ +++ K P + + Sbjct: 57 TLGEFFNEEQEEEQIVFTEEDFFVKKDEEYKNQIKWIIPNAQKNCMEPIHLLLEKGGETC 116 Query: 118 VGVP--------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 P EI A + ++ T L + +++ + Sbjct: 117 PDNPHEGEEFGYILKGKVEIHLGKRICIAQKGDAFYYRADKTHYLKGIERTELIWV 172 >gi|29348605|ref|NP_812108.1| hypothetical protein BT_3196 [Bacteroides thetaiotaomicron VPI-5482] gi|253569054|ref|ZP_04846464.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29340510|gb|AAO78302.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251841073|gb|EES69154.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 236 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 57/208 (27%), Gaps = 19/208 (9%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA G+ + + RNR + K+ + P + + Sbjct: 24 SELASYLGVSRATLSNWC-----ARNRIDFHLLLNKMRDVDLNWLLVGKGTPRHQTKLCK 78 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-------AIQTQD 137 + + D + + + + +I D Sbjct: 79 SDLASGEVQMIHNPKTVEALDDRSVALYDITAAANLKTLLTNKRQYMVGKIQIPSIPLCD 138 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGD---IVAKVLIS-RRG 190 SM P+ + GDI+ + G+ L+ + K + + Sbjct: 139 GAVYISGDSMYPILKSGDIVGFKEINSFSNLIYGEMYLVSFTIEGDEYLAVKYVNRSEKE 198 Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S N + + S I +A + Sbjct: 199 GCLKLVSYNAHHDPMDIPFSTINAMAIV 226 >gi|304440189|ref|ZP_07400079.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371238|gb|EFM24854.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 182 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 6/134 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + NLT LA+++ L ++ +R PS ++ IL A Sbjct: 6 DIGNKLKLIRISQNLTQDELAKRSELTKGFISQVERNLT-----SPSVTTLIDILEALGT 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + + +E E S S ++ F T+ P+ +S Sbjct: 61 SPIEFFKDDEAKFFFSEDDYFENTNEELGHSISWIVPNAQRFMMEPIIITI-NPDGKSEE 119 Query: 128 NGIYAIQTQDTRHK 141 + +T K Sbjct: 120 IPPFEGETFGYVLK 133 >gi|108803433|ref|YP_643370.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764676|gb|ABG03558.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 134 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + + LAR++G+D + + + R PS ++ K+ A + +L Sbjct: 5 LRQLRRQMGWSQHELARRSGVDRATISAIESG-----KRDPSGSTMRKLADALGVPVAEL 59 Query: 73 LDLP 76 P Sbjct: 60 YKEP 63 >gi|293400092|ref|ZP_06644238.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306492|gb|EFE47735.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 247 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 2/108 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +++K+ I + + LT LA K + + +K +R P + Sbjct: 1 MDQINNEKVGSYISELRKAKKLTQKDLADKLYVSDKTVSKWERGVSM--PSIPLLMPLAN 58 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + T + + ++Y + Sbjct: 59 LFDITVTELLKGEHQNIESLTKPCDIHAYDHVIYHTLQQHRKHWIIAY 106 >gi|269838246|ref|YP_003320474.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787509|gb|ACZ39652.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 71 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + E T LA + G+ P + + E P + K+ ++ Sbjct: 1 MKTIKELREARGWTQLELAYRVGVTPATIYNWEAGRNE-----PKASQLRKLAQIFGVSM 55 Query: 70 CQLLDLPF 77 ++ P Sbjct: 56 DEIDFTPS 63 >gi|187250978|ref|YP_001875460.1| helix-turn-helix domain-containing protein [Elusimicrobium minutum Pei191] gi|186971138|gb|ACC98123.1| helix-turn-helix domain protein [Elusimicrobium minutum Pei191] Length = 238 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 71/247 (28%), Gaps = 45/247 (18%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIF 59 M +KI I R+ +T LA + G+ ++ ++ + E++ Sbjct: 1 MKM--GEKIAANIKRL----KITKVKLAERIGISDSSAISQWVKGKTRPLP-----ENLE 49 Query: 60 KILAATNETICQLLDLPFSDGRTTE---------------------KKEKEIPLLYFPPS 98 K+ + T+ +L D + E +++E Sbjct: 50 KLASEFGITVQELDDDIETGENLEEKTRALLYAIESITKKMSFGVSDEQEEYSTSSLSNK 109 Query: 99 GSGGFFDSGVFPT-GNKWNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLY 151 F G + S + + K + + Sbjct: 110 TKIDVFMPKHIAVTGEAKEEFFIYPSYSSVDEYLPMLIDSPDDKTPFALKIESGEVYAYA 169 Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++G+ ++ A + G L+K + K++ + I L S + D Sbjct: 170 KEGEYAVIMPADKAITGKTALVKFNKKYCIKKIIF--NDKEIVLKS---GKKEIKANLED 224 Query: 212 IEWIARI 218 +E + + Sbjct: 225 VEVLGFV 231 >gi|81299574|ref|YP_399782.1| XRE family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81168455|gb|ABB56795.1| transcriptional regulator, XRE family [Synechococcus elongatus PCC 7942] Length = 109 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + +R L+ + LA G+DP + +R + K+ A + + Sbjct: 31 NIAALRKRTGLSQTQLANIVGVDPVTIRNWERGRSGLDW----FVKLAKLCEALDCSPRD 86 Query: 72 LLDLPF 77 L+ P Sbjct: 87 LVKDPD 92 >gi|26987275|ref|NP_742700.1| transcriptional regulator, putative [Pseudomonas putida KT2440] gi|24981919|gb|AAN66164.1|AE016244_5 transcriptional regulator, putative [Pseudomonas putida KT2440] Length = 278 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 60/231 (25%), Gaps = 28/231 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR-----------NRWPSTES 57 + + + LTPS A + + N KR R RW T Sbjct: 50 GDRLRALLHECGLTPSDFAAQRSVTAQHVNNWFKRGVPLARLDELADLFCVHRRWLRTGE 109 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K +E + + + + Y+ + Sbjct: 110 GPKHPNPLLRNGRPRPAPANPLTPLSEHRGRVLKVPYYEVRNG--------LLSPVGSKH 161 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P G+ A ++MLPL L ++ + + Sbjct: 162 LRLPAKALKGLGVQA--GNAICLAMPASNMLPLIPLQATLAIDLGMTQVVEGETYALLQN 219 Query: 178 GDIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222 G + L ++ L S Y V+ + +E + + S Sbjct: 220 GMLRVNNLSLGPHDTLYLHSHDRRNYTVERYTAAQRQAQGLEILGWVFHWS 270 >gi|328886799|emb|CCA60038.1| Transcriptional regulator, MerR family [Streptomyces venezuelae ATCC 10712] Length = 189 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 9/165 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I ++ ++ + LA ++GL ++ +R PS SI++I A + Sbjct: 12 EVGRVIRSCRKQRGVSMAVLAARSGLSQPFLSQLERGLAT-----PSLSSIYRIAEALDV 66 Query: 68 TICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T L P G + + I + + G + P Sbjct: 67 TPGTFLRPPGRPGAVSHESDPQTIRVNETAGQVAQVLIPGGRSTVMEAYEHHFDPGQ--G 124 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G + +D + + +L + L L + + + Sbjct: 125 ERGWFEHPGEDFLYVLEGEIVL-EVEGEEPLTLRAGQSAHHRGEV 168 >gi|283785296|ref|YP_003365161.1| DNA-binding protein [Citrobacter rodentium ICC168] gi|282948750|emb|CBG88345.1| putative DNA-binding protein [Citrobacter rodentium ICC168] Length = 191 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 14/148 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + + LA KAG+ +K +R P+ + ++ A Sbjct: 9 NQRIGVRIRIERESRGWSLTELAEKAGVSRAMIHKIERGES-----SPTATLLGRLSGAF 63 Query: 66 NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 ++ L+ + + + L S D + Sbjct: 64 GISMSTLIARAEMPEGKLLRAADQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPGGSD- 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + +P Q + Sbjct: 123 IPMPASSYARARQLIWLQQGELVFVEGE 150 >gi|258650681|ref|YP_003199837.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553906|gb|ACV76848.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 197 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 5/134 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + R+ + +T + LA G+ ++ ++ + R S E + + A N Sbjct: 13 EQVGPRLKRLRTQRQVTLTALAAATGISKSTLSRLETGQ-----RKASLELLLPLAMAYN 67 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L+ P K + + P + P Sbjct: 68 VPLDDLVGGPDIGDPRVRLKPRRVKGRTVIPLTQQPGSTQAWKIVIPTTKSTPEPRSHEG 127 Query: 127 HNGIYAIQTQDTRH 140 H +Y + + Sbjct: 128 HEWLYVLSGRMRLV 141 >gi|296139176|ref|YP_003646419.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027310|gb|ADG78080.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 171 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 5/106 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + L+ S LAR+AG+ S ++ + G R P+ E+++ + + Sbjct: 5 DVGGRLRELRSERGLSLSELARRAGVGKGSLSEIEAGG-----RNPTVETLYSLCGPLDV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + LL T + + L FP + Sbjct: 60 PLTALLGESPGTDSTAHGGMRTVLLSVRHLPHVTVEVFRLEFPESS 105 >gi|119716897|ref|YP_923862.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides sp. JS614] gi|119537558|gb|ABL82175.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides sp. JS614] Length = 508 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ +I I + LT LA G ++ N+ ++ S E + + Sbjct: 1 MSEGYKNRIGNLIRDARKHRGLTQHQLADLLGTSQSAINRIEKGHQN-----LSLEMLAR 55 Query: 61 ILAAT 65 I AA Sbjct: 56 IGAAL 60 >gi|27381246|ref|NP_772775.1| hypothetical protein blr6135 [Bradyrhizobium japonicum USDA 110] gi|27354413|dbj|BAC51400.1| blr6135 [Bradyrhizobium japonicum USDA 110] Length = 202 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 65/211 (30%), Gaps = 44/211 (20%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I+R E+ + GLA G+ P + ++ G R I I+ + + Sbjct: 7 IERGLEKTGKSKGGLAAAMGVRPGAVSEIL-----GGERLVKASEIIPIMEYLELNLAPI 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + V PE + Sbjct: 62 MGRVG-----------------------------AGAVIEPDYEQVP-PEGLGDIALPFP 91 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV----NCGDRLLIKPRTGDIVAKVLIS- 187 I + + SMLP Y GD++++ + G+ +++ +TG+ K + Sbjct: 92 IMEETIAFEIVGDSMLPKYESGDVIVVYKDQRHPLSSFYGEEAVVRLKTGERYLKTIERG 151 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + ++L S N ++W+ I Sbjct: 152 KSPSVVNLNSFNAK--PIV--GVKLDWVGEI 178 >gi|325661815|ref|ZP_08150437.1| hypothetical protein HMPREF0490_01173 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471904|gb|EGC75120.1| hypothetical protein HMPREF0490_01173 [Lachnospiraceae bacterium 4_1_37FAA] Length = 205 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 4/88 (4%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 R+ + + K + SM+ GD LI+ + GD ++ + Sbjct: 100 RTSLPTVIFGKGPFYILKAKGDSMVDAGIESGDTLIIRKNAEPKLGDIVVALDENNENTL 159 Query: 183 KVL--ISRRGRSIDLMSLNCC-YPVDTV 207 K I + + L +N YP + Sbjct: 160 KRYAGIDKESNKVVLEYMNQEVYPDKKI 187 >gi|257870456|ref|ZP_05650109.1| predicted protein [Enterococcus gallinarum EG2] gi|257804620|gb|EEV33442.1| predicted protein [Enterococcus gallinarum EG2] Length = 207 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I ++ + +T +A + + P + +K +R +P + + K+ + Sbjct: 3 EIGENIKKLRKAKRMTQKEVANQLNVTPQTISKWERNIS-----YPDLDMLVKLSQLFHI 57 Query: 68 T 68 + Sbjct: 58 S 58 >gi|225375055|ref|ZP_03752276.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] gi|225213127|gb|EEG95481.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] Length = 305 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 50/154 (32%), Gaps = 3/154 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK--RFGIEGRNRWPSTESIFKILAA 64 +KI + I + +T LA K + + ++ + R + P E + + Sbjct: 4 EKIGKYIRKKRIEKGMTQQQLAEKIQVTEKAVSRWETGRGVPDISLLEPLAEELHVSVTE 63 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ + D + ++ + +++G F G V + Sbjct: 64 LLNGEERVQEEAVHDTKAHMADIDITNVIEYVQENRKEKYNTG-FKIGIGCLVVSLVLFL 122 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 Y Q + T + ++ G++++ Sbjct: 123 LYLREAYRFQGNYFGTMIRMTVISGIFLLGEMVL 156 >gi|194471472|ref|ZP_03077456.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358313|ref|ZP_02655078.2| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457836|gb|EDX46675.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335557|gb|EDZ22321.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 185 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 8 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I N + P ++ T +++ ++ Sbjct: 62 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 94 >gi|197251173|ref|YP_002146431.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|238911841|ref|ZP_04655678.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197214876|gb|ACH52273.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 178 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I N + P ++ T +++ ++ Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 87 >gi|34497476|ref|NP_901691.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34103331|gb|AAQ59693.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 181 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + R L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 2 DVGARLRMVRTRFGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVSSLKKVLEGLPI 56 Query: 68 TICQLLDLPFSDGRT 82 T+ + + Sbjct: 57 TLAEFFTFDAEPAQP 71 >gi|89069114|ref|ZP_01156487.1| DNA binding protein, putative [Oceanicola granulosus HTCC2516] gi|89045287|gb|EAR51353.1| DNA binding protein, putative [Oceanicola granulosus HTCC2516] Length = 285 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 4/102 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R L S LAR+AG+D ++ ++ + R P+ + Sbjct: 17 RLAAAMARRGLNQSDLARQAGVDRSTVSQLLKDDT----RLPNAHVAALCAEVLGVSADW 72 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 LL L + + + P + Sbjct: 73 LLGLTQRPELAADLVAAAMKITEAPRALVDEQIFDWHREAEG 114 >gi|291447690|ref|ZP_06587080.1| signal peptidase protein [Streptomyces roseosporus NRRL 15998] gi|291350637|gb|EFE77541.1| signal peptidase protein [Streptomyces roseosporus NRRL 15998] Length = 145 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179 PE R G + + SM+P GD+L++ + V GD ++++ Sbjct: 5 PERRQVSGGGRVTRRPLRVVEVTGPSMVPTLYHGDLLLVQYGVPVRPGDVVILRHPFQQD 64 Query: 180 -IVAKVLISRRGRSIDLMSLNC----CYPVDTVEMSDIEWIARI 218 +V K + RR + N V ++ +AR+ Sbjct: 65 LLVVKRAVERRPGGWWVRGDNTFAGGDSTDYGVVPEEL-VLARV 107 >gi|254669535|emb|CBA03488.1| probable transcription regulator [Neisseria meningitidis alpha153] gi|316985890|gb|EFV64831.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325128155|gb|EGC51047.1| hypothetical protein NMXN1568_1090 [Neisseria meningitidis N1568] gi|325130148|gb|EGC52927.1| hypothetical protein NMBOX9930304_1071 [Neisseria meningitidis OX99.30304] gi|325134224|gb|EGC56873.1| hypothetical protein NMBM13399_1167 [Neisseria meningitidis M13399] gi|325140271|gb|EGC62796.1| hypothetical protein NMBCU385_1110 [Neisseria meningitidis CU385] gi|325144414|gb|EGC66716.1| hypothetical protein NMBM01240013_1198 [Neisseria meningitidis M01-240013] gi|325200306|gb|ADY95761.1| conserved domain protein [Neisseria meningitidis H44/76] gi|325202205|gb|ADY97659.1| conserved domain protein [Neisseria meningitidis M01-240149] Length = 51 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222 + K + + S+ L+S N YP + ++ DI+ I +++ S Sbjct: 2 LWVKRIQRQIDGSLLLISDNSTYPPMPLALAEHPDIQIIGQVVQVS 47 >gi|198283913|ref|YP_002220234.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666348|ref|YP_002426547.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248434|gb|ACH84027.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518561|gb|ACK79147.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 181 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 13/166 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + I ++ E + GLA +A + P++ ++ + PS ++ KI AA Sbjct: 2 EQVCKKIRQLREDRGWSVRGLAARAEISPSALSQIEAGQN-----SPSIATLEKICAALQ 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIR 124 I + D + G + + Y S + + P V P Sbjct: 57 IPIAAIFDDGETAGLPWIMRSGDRRKFYSAGSHASLEPLARGLPQKKMQPLLMVLEPGGE 116 Query: 125 SPHNGIYAIQTQDTRHKTQDTS------MLPLYRKGDILILNSAIQ 164 + + + ++ + T+ + +GD + + + Sbjct: 117 CGEHPYTSAEGEEFTIVIRGTAAFEQSGVTTELGEGDAIYYDPRLP 162 >gi|167747594|ref|ZP_02419721.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662] gi|239623032|ref|ZP_04666063.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652956|gb|EDR97085.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662] gi|239522611|gb|EEQ62477.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 123 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I R E LT LA AG+ + +K + +R ++ KIL A Sbjct: 8 ITENIRRAREERGLTQEALAELAGISHSHLSKVESG-----SRTIGMKTYIKILEALE 60 >gi|160947244|ref|ZP_02094411.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] gi|158446378|gb|EDP23373.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] Length = 180 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 6/135 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + LT LA +A L ++ +R PS S+ +L A Sbjct: 2 DIGEKIKNLRTILGLTQEELAERAELTKGFISQLERGLT-----SPSISSLEDVLEALGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I + +K + + S ++ T+ + S Sbjct: 57 NISDFFKEEKEEKFVFQKFDAYETIFENGNSKLEWIVPNAQKNSMEPIIITLNEQKSFSR 116 Query: 127 HNGIYAIQTQDTRHK 141 + + K Sbjct: 117 TYEPFEGEEFGYVLK 131 >gi|330985511|gb|EGH83614.1| AraC family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 8/164 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ E + + LT L AG+ + +K + P + + K+ A Sbjct: 2 NETFAERLAHLRAEKGLTQRELGAAAGVAWSMISKYESGKS-----APRLKVLMKLADAL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +L + + L + + TG + + E+ Sbjct: 57 GVSADELKGALSKQTNKLKIYDGFSSRLIAARANAAFSRKKLCEATGLSGDDLADMELGD 116 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 ++ T S+ + + ++L+ V GD Sbjct: 117 LLPSPEDVKKIAHALGTSVDSLAGAKHEEEAVLLH---FVEPGD 157 >gi|161613938|ref|YP_001587903.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363302|gb|ABX67070.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 178 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I N + P ++ T +++ ++ Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 87 >gi|220923328|ref|YP_002498630.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947935|gb|ACL58327.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 183 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + + + RH L+ LA+KAG+ ++ + + PS ++ +IL Sbjct: 1 MTNDGVGARLRYVRLRHGLSQRALAKKAGVVNSTISLIESGKAN-----PSVGALKRILD 55 Query: 64 ATNETICQLL 73 A + + Sbjct: 56 AVPIGLAEFF 65 >gi|222150840|ref|YP_002559993.1| type-I signal peptidase SipB homolog [Macrococcus caseolyticus JCSC5402] gi|222119962|dbj|BAH17297.1| type-I signal peptidase SipB homolog [Macrococcus caseolyticus JCSC5402] Length = 182 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 SM P + GD +I+N ++ GD ++ + K +I + G ++ Sbjct: 32 VSGDSMYPTFTDGDKVIVNKMSTLHHGDVIVFHTGSTQDYVKRIIGKPGDKVEYR 86 >gi|149201921|ref|ZP_01878895.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149144969|gb|EDM32998.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 129 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 5/83 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + L LA KAGL P+S + ++ R PS +++ + + + T Sbjct: 24 GRRLRAARTERGLEQQQLAEKAGLPPSSISHFEKGA-----RKPSFDNLRNLAKSLDVTT 78 Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92 LL + R + L Sbjct: 79 DYLLGRVDTMDRVESAQRLHRHL 101 >gi|78187738|ref|YP_375781.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167640|gb|ABB24738.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 120 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 5/106 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R + LA KAGL T +R R + + KI A N Sbjct: 11 LGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGE-----RNITLLNYAKIADALNLA 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + L+ ++ K+ ++ F +G Sbjct: 66 MHDLMKDLVYPPPPPKQTSKKNRVVGLLAGRCRFLFIEARPGSGLG 111 >gi|325697167|gb|EGD39054.1| transcriptional regulator [Streptococcus sanguinis SK160] Length = 108 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS FKI NE Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIAFKIAHIFNE 95 Query: 68 T 68 Sbjct: 96 N 96 >gi|298246750|ref|ZP_06970555.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297549409|gb|EFH83275.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 930 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 9/144 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + R + LA + G+ + N+ +R PS K Sbjct: 1 MKKLAPAGANQRLRAERLRKRWSQQELADRIGVSVITINRWERGVT-----APSPYFRLK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + ++ +L P E P+ + + P + Sbjct: 56 LCSLFGKSATELGLFPDQQAEQAMSPEPGPPVDHPQLPQQLKYLPYRRNPFFTGREAL-- 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 + H + A TQ Sbjct: 114 --LERLHTRLQASPTQIYALCGLG 135 >gi|260425895|ref|ZP_05779874.1| putative transcriptional regulator [Citreicella sp. SE45] gi|260420387|gb|EEX13638.1| putative transcriptional regulator [Citreicella sp. SE45] Length = 89 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 9/84 (10%) Query: 147 MLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---Y 202 M P GD+++++ V G + + L R + S N + Sbjct: 1 MAPAICDGDLVMVDRKATVLRNGKAYAYQTQEDGFCLARLELVPERILIARSDNPDTEQF 60 Query: 203 PVDTVEMSDIE-----WIARILWA 221 ++I + ++W+ Sbjct: 61 SPKYYSGNEIALVQAGILGEVIWS 84 >gi|254409465|ref|ZP_05023246.1| hypothetical protein MC7420_7098 [Microcoleus chthonoplastes PCC 7420] gi|196183462|gb|EDX78445.1| hypothetical protein MC7420_7098 [Microcoleus chthonoplastes PCC 7420] Length = 74 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 26/53 (49%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + ++ +R LT LA G+ + + ++ +E + + T+ + ++L T Sbjct: 10 LTKLRQRAGLTQQELASAIGVTQKTISIWEKGSVEPKLTFEQTKLLIEVLNCT 62 >gi|206976223|ref|ZP_03237132.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] gi|206745677|gb|EDZ57075.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] Length = 119 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + ++ LT LA + L +R R S ++ KI + Sbjct: 8 VGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGE-----RNISMLTLQKIADGLEVS 62 Query: 69 I 69 Sbjct: 63 P 63 >gi|170729039|ref|YP_001763065.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814386|gb|ACA88970.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 327 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R+ ++ + LA K + S +K + P I K+ + Sbjct: 3 LAEKIIRLRKQLGWSQEELAEKMAISRQSVSKWESANSI-----PDLNKIIKLADIFEVS 57 >gi|257062841|ref|YP_003142513.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790494|gb|ACV21164.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 369 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 5/112 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I R+ + LT GLA G+ S +K + +P E + KI A + T Sbjct: 7 IGTTIYRLRKEARLTQDGLAMHLGVTKASVSKWENGQS-----YPDIELLPKIAAYFDIT 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I QL+ R +E F G+ ++ + Sbjct: 62 IDQLIGYEPQMSRVGIARECARLRAAFANEPFDQAHRQCQQLVGDYYSCYPL 113 >gi|224543174|ref|ZP_03683713.1| hypothetical protein CATMIT_02374 [Catenibacterium mitsuokai DSM 15897] gi|224523961|gb|EEF93066.1| hypothetical protein CATMIT_02374 [Catenibacterium mitsuokai DSM 15897] Length = 159 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 50/170 (29%), Gaps = 28/170 (16%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + E+ ++ +A++ G++ ++ + + + + E I K+ + Sbjct: 5 DYLKKYKEKMGVSNEYIAKQLGVNRSTVTRWLKGDTKVT----NPEVIEKLSFILGADVE 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L++ + + K L + + V + Sbjct: 61 SLINNEERFEKPVLGEVKAGYDLLIDENF-------------EGYEQVTQDDYYRG---- 103 Query: 131 YAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 D + SM GD+L + V G ++ + Sbjct: 104 ------DFFLRVVGDSMSGAHIHDGDLLYVKKCQDVPSGTIAVVLIGRSE 147 >gi|83589168|ref|YP_429177.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572082|gb|ABC18634.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 146 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 7 KKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+ I + E+ + + LAR +G+ ++ + + G+ R P E++ K+ Sbjct: 4 KEFGSYIAHLREKAGFESQAALARASGVWNSTIARIE----AGQTRQPDPETLKKLAPFL 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + L+ + + ++ Sbjct: 60 KVSAQDLMTAAGYLPEEEKPTKPIDTREWY 89 >gi|282851951|ref|ZP_06261311.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556960|gb|EFB62562.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 153 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 5/88 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I ++ E ++ S +A G+ + + ++ R P E K+ ++ Sbjct: 1 MNRIKQLREEKGVSQSDVANAVGITRQAVSLYEQG-----KRAPKLEIWQKLADLFEVSV 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 L L + + + + Sbjct: 56 PYLQGLSEMSEQVYLIQSTDCLVDRAIQ 83 >gi|227544982|ref|ZP_03975031.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227185043|gb|EEI65114.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 247 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +KK I + + LT +A G+ + ++ + R P E+ K Sbjct: 12 MYMSENKKPHNRIAELRKEKGLTLQQVADAIGVGNNTISRYETG-----KREPKLETWQK 66 Query: 61 ILAATNETICQLLDL 75 + + T+ L Sbjct: 67 LANYFDVTVYYLQGY 81 >gi|290474343|ref|YP_003467222.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] gi|289173655|emb|CBJ80435.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] Length = 121 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + KK + + + + L+ S L + A L T + +R R + + + Sbjct: 1 MAAATEKKFAQRLRELRRQKGLSQSELGKLAELHYTHIGRFERGTS--RPGSDTLKRLAD 58 Query: 61 ILAAT 65 +L T Sbjct: 59 VLDVT 63 >gi|291456508|ref|ZP_06595898.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291381785|gb|EFE89303.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 161 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 37/147 (25%), Gaps = 7/147 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT--N 66 I + I + E LT S A K + + ++ ++ E PS + I I Sbjct: 3 IGQVIKVVREERGLTQSQFAHKLFVTQQALSRWEKGTAE-----PSIDMIRLISTRFEVP 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + P G + + + G + Sbjct: 58 MARLMEMPDNGFCQSCAMPFYRPEDHGTEPDGTRSGDYCNYCYDDGVFLQDYANSDELVA 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRK 153 ++ + + M L Sbjct: 118 ACAPMMAESCHISVEQAEDCMSALLPN 144 >gi|169824019|ref|YP_001691630.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|167830824|dbj|BAG07740.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] Length = 176 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 10/68 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E I + +++ L+ LA + + + +K +R P ++S+ K Sbjct: 1 MKMLN-----ENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSV-----PDSDSLIK 50 Query: 61 ILAATNET 68 + + Sbjct: 51 LSEILQTS 58 >gi|15891606|ref|NP_357278.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] gi|15160044|gb|AAK90063.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] Length = 182 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + RHN++ LAR+AG+ ++ + + PS ++ +IL Sbjct: 4 DLGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 59 GLAEFFAFEPETSRKAF 75 >gi|85060022|ref|YP_455724.1| hypothetical protein SG2044 [Sodalis glossinidius str. 'morsitans'] gi|84780542|dbj|BAE75319.1| hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 217 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 18/180 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + + ++ + L+ G+ + N +R P+ ++ I Sbjct: 17 KKIGKNLVYLMKKQEIDAQHLSTLTGIGIATINNLRRGVGN-----PTISTLSAISDFFG 71 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L D D + T K++PL+ + G + + TV V + Sbjct: 72 VKMGNLTDTVMEDCKNTLGNIKKMPLIKY---NDLGSYYHSKIDITKSY-TVEVEDNADN 127 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + ++ P + G I +++ N GD +L+K + + + + Sbjct: 128 ---------SLIAIEIANNALSPFFESGTICVVSEQECFNDGDVVLVKIKDYPLCFRRVF 178 >gi|330508360|ref|YP_004384788.1| Helix-turn-helix protein [Methanosaeta concilii GP-6] gi|328929168|gb|AEB68970.1| Helix-turn-helix protein [Methanosaeta concilii GP-6] Length = 70 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 11/77 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H I + RH LT LAR G+ + ++ PS + K Sbjct: 1 MVLRTH------IKELRARHGLTQEELARMVGVRRETILFLEKGKYN-----PSLKLACK 49 Query: 61 ILAATNETICQLLDLPF 77 I A +I ++ Sbjct: 50 IALALQASIDEIFIFEE 66 >gi|323694108|ref|ZP_08108287.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323501825|gb|EGB17708.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 177 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 16/139 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + LT LA +A L ++ +R PS ++ IL Sbjct: 2 NIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56 Query: 68 TICQLLDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 TI + + + + K P + + + + Sbjct: 57 TIGEFFNETPEEQIVFGKNDYFTKEDTELKNEIKWIIPNAQKNIMEPIHLVLSPGGFTYP 116 Query: 119 GVPEIRSPHNGIYAIQTQD 137 P Y +Q Sbjct: 117 DTP--HEGEEFGYVLQGSI 133 >gi|254973959|ref|ZP_05270431.1| DNA-binding protein [Clostridium difficile QCD-66c26] gi|255091345|ref|ZP_05320823.1| DNA-binding protein [Clostridium difficile CIP 107932] gi|255313003|ref|ZP_05354586.1| DNA-binding protein [Clostridium difficile QCD-76w55] gi|255515762|ref|ZP_05383438.1| DNA-binding protein [Clostridium difficile QCD-97b34] gi|255648855|ref|ZP_05395757.1| DNA-binding protein [Clostridium difficile QCD-37x79] gi|260682072|ref|YP_003213357.1| DNA-binding protein [Clostridium difficile CD196] gi|260685670|ref|YP_003216803.1| DNA-binding protein [Clostridium difficile R20291] gi|306518972|ref|ZP_07405319.1| DNA-binding protein [Clostridium difficile QCD-32g58] gi|260208235|emb|CBA60614.1| DNA-binding protein [Clostridium difficile CD196] gi|260211686|emb|CBE01972.1| DNA-binding protein [Clostridium difficile R20291] Length = 364 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 14/198 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + +T LA G+ S +K + +P + ++ N Sbjct: 5 NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQS-----YPDITFLPQLATYFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T+ +L+ + K F D ++ + Sbjct: 60 TVDELICYEPQMMKEDINKLYNKLCKDFTVKPFDEVMDEIREIIKKYYSCFPLIFRM--- 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 G+ + D + L + + + N D + ++ + +L++ Sbjct: 117 -GLLIVNHYDI---VDEKKRELLISEALEIFIRIQETCNDIDIC-RQAKSMEATCYILLN 171 Query: 188 RRGRSIDLMSLNCCYPVD 205 + + IDL+ N +P+ Sbjct: 172 QPIQVIDLLQ-NSNFPMI 188 >gi|320105343|ref|YP_004180933.1| hypothetical protein AciPR4_0098 [Terriglobus saanensis SP1PR4] gi|319923864|gb|ADV80939.1| hypothetical protein AciPR4_0098 [Terriglobus saanensis SP1PR4] Length = 237 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 71/230 (30%), Gaps = 23/230 (10%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + ++R LT S LAR AG + + R S E + ++L + Sbjct: 7 HELLRAELERRISAGRLTGSVLARMAGFQQAHISNFLN-----KKRALSLEGLDRVLESQ 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 T+ + + T+ ++ PL P + TV V R Sbjct: 62 GLTV-EQILPIDLAASATQPPDQADPLESVPVVSAAAAMGEPRIAPAATQETVYVSAARL 120 Query: 126 PHNGIYAIQTQD-----TRHKTQDTS---MLPLYRKGDILILNSA----IQVNCGDRLLI 173 N + + M P+ G ++IL+ + + Sbjct: 121 HGNRPRIAPHRGQWQRFVALRIDAQQAAPMEPVLPSGAVVILDRHYNSVAPYSAHQPSVF 180 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARI 218 R G ++ ++ + L +PV V + E + R+ Sbjct: 181 AVRHGSGLSLRYVTLEESRLVLRPYAREFPVQLVRLLQTEAPGDFIVGRV 230 >gi|237746118|ref|ZP_04576598.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229377469|gb|EEO27560.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 130 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 5/99 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KI + I+ N++ S LARK G+ P + K ++ P ++ K+ A Sbjct: 2 DKIAKRIEDCRHGLNISQSELARKIGVTPQAVQKWEKAKTV-----PRGATLRKLADALG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 + + E+E + Sbjct: 57 VSPAYIQFGISDPVPDYPAVEQEKAEYIVNKRPGQNDWP 95 >gi|225375203|ref|ZP_03752424.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] gi|225212954|gb|EEG95308.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] Length = 187 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 5/103 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++K+ I + + LT + LA+K + + +K +R +P + + + Sbjct: 1 MDNQKLGIFITELRKEKGLTQAQLAQKLNVTDKAVSKWERGVG-----FPDIKLLEPLAD 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + ++ +L+ T + S Sbjct: 56 VLDISLLELMKSERLPKTTVSAPDTTDAFQNVIDLASYERKIE 98 >gi|82703709|ref|YP_413275.1| putative prophage repressor [Nitrosospira multiformis ATCC 25196] gi|82411774|gb|ABB75883.1| putative prophage repressor [Nitrosospira multiformis ATCC 25196] Length = 210 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 8/104 (7%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 PE+ + + +Q + SM+ +GDI+I+ + + G+ +++ + Sbjct: 90 PELLRIDDYLIEKPSQTILFPVKGDSMIDLGILEGDIVIIERSSSASPGE-VVLAIVDSE 148 Query: 180 IVAKVLISRRGRSIDLMSLNCC----YPVDTVEMSDIEWIARIL 219 KVL + L + N YP +E + Sbjct: 149 FTLKVLARDKEG-YYLEARNEARGKEYPPIR-PQQKLEIYGFYV 190 >gi|296395417|ref|YP_003660301.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182564|gb|ADG99470.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 148 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +A+ R E+ +T + LAR GL ++ K + P+ E++ K AA + Sbjct: 11 LDALVRAREKRRMTRADLARLTGLSTSTIQKWESGAT-----SPNIETLAKAAAALGVPM 65 >gi|118467518|ref|YP_885321.1| XRE family transcriptional regulator protein [Mycobacterium smegmatis str. MC2 155] gi|118168805|gb|ABK69701.1| transcriptional regulator, XRE family protein [Mycobacterium smegmatis str. MC2 155] Length = 142 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I E ++ LA KAG+ ++ +R R PS + + +I A Sbjct: 16 QDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRKPSADVLNQIAKALR 70 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL 92 + L + + ++ + Sbjct: 71 VSAEVLYVRAGILEPSEPSEVRDAIV 96 >gi|77404719|ref|YP_345292.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77390369|gb|ABA81551.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] Length = 141 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 5/103 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ ER L+ + LAR+AG+ ++N+ R P + + + Sbjct: 14 RRLQQLTERSGLSQAELARRAGMSRDTYNRYCRGLTR-----PPRKKVLALAELFGVETW 68 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 ++ L + E+ + L P S + +G+ Sbjct: 69 EIDPLEAGIAALRRESERSLEALGEQPIPSTPPYTLSPPSSGD 111 >gi|302876797|ref|YP_003845430.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307687480|ref|ZP_07629926.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302579654|gb|ADL53666.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 208 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M++ + + + I + E+ LT LA K + +F+++ R + E I K Sbjct: 1 MSNLNIDILNQNIQTLMEQEGLTQQQLAEKIDMSQPNFSRAFNNKGGQR---FTLEQICK 57 Query: 61 ILAATNET 68 I + Sbjct: 58 IADHFQVS 65 >gi|52081948|ref|YP_080739.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|319647811|ref|ZP_08002029.1| transcriptional regulator [Bacillus sp. BT1B_CT2] gi|52005159|gb|AAU25101.1| possible transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|317390152|gb|EFV70961.1| transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 132 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 4/105 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + E+ +L+ + LA AG+ + ++ + G P +I K+ A Sbjct: 3 RFGERLKELREQRSLSVNQLAMYAGVSAAAISRIEN----GHRGVPKPATIRKLAEALKM 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 QL+D+ +++ + + G D +F Sbjct: 59 PYEQLMDIAGYMRADEIREQPRGYVTMQEIAAKHGVEDLWLFKPE 103 >gi|306812748|ref|ZP_07446941.1| repressor protein [Escherichia coli NC101] gi|305853511|gb|EFM53950.1| repressor protein [Escherichia coli NC101] Length = 189 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 55/211 (26%), Gaps = 40/211 (18%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68 +AI+R+ E + T L G+ ++ + R + + + T + Sbjct: 9 KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L S + E+ G + Sbjct: 62 LNWLTTGHGSKQASANTNTIEVVKYLLSD--------------GALQEDGFYIFDKGFLP 107 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + + G ++ G+I + + Sbjct: 108 STFKKP------FVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRL 153 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ D+E I +I+ Sbjct: 154 PGGRIFVEGGNRAF---ECKIEDVEIIGKII 181 >gi|224583902|ref|YP_002637700.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468429|gb|ACN46259.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 185 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 8 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 62 IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121 Query: 118 VGVPEIRSPH 127 H Sbjct: 122 TPHKAGVVEH 131 >gi|168241154|ref|ZP_02666086.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450448|ref|YP_002045645.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408752|gb|ACF68971.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339362|gb|EDZ26126.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 178 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 55 IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHKAGVVEH 124 >gi|62180172|ref|YP_216589.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127805|gb|AAX65508.1| putative oxidoreductase/putative repressor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714645|gb|EFZ06216.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 178 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 55 IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHKAGVVEH 124 >gi|256848878|ref|ZP_05554312.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256714417|gb|EEU29404.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 68 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 5/67 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ S LA+ G + + + R + KI + + Sbjct: 5 LKILRVEKGMSQSDLAQALGTTQVTVSAWETGRSTPRP-----PMMQKIADYFGVSKDDI 59 Query: 73 LDLPFSD 79 F+ Sbjct: 60 FFSAFNY 66 >gi|253575334|ref|ZP_04852672.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845331|gb|EES73341.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 4/100 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I E I ++ + + S LA KA + + + +R PS I KI A N Sbjct: 3 EHIGERIQKLRQDRGYSLSELAEKADVAKSYLSNVERNIQS----NPSISFIEKIADALN 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 +I LL + + E+ S F Sbjct: 59 VSINLLLYGDRPAPELLDPEWSELVQEAMTSGVSKKEFKE 98 >gi|237738616|ref|ZP_04569097.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229424099|gb|EEO39146.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 131 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT S LA + + P++ ++ R PS E + ++ N Sbjct: 6 EIKDRIISLRNEKNLTQSQLAEELNISPSAIGMYEQG-----RRKPSYELLEELCDYFNV 60 Query: 68 TICQ 71 + Sbjct: 61 DMDY 64 >gi|222053702|ref|YP_002536064.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221562991|gb|ACM18963.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + I + + +T LA + G+DP + + PS E++ KI Sbjct: 2 KTTKELLGARIKELRKLRKMTQEKLAEQIGVDPKYVSFIEVGRS-----SPSLEAMEKIA 56 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 A + + + D + R ++ + L Sbjct: 57 QALDVEMKDMFDFSHHEAREVSIEQIDEMLSGVTEDQLKIIH 98 >gi|146299587|ref|YP_001194178.1| hypothetical protein Fjoh_1827 [Flavobacterium johnsoniae UW101] gi|146154005|gb|ABQ04859.1| hypothetical protein Fjoh_1827 [Flavobacterium johnsoniae UW101] Length = 230 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 58/224 (25%), Gaps = 18/224 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I + + + R G+ SF ++ K G + + IL Sbjct: 3 ENTLKRIKQYLDYKGIRIRAFERVVGMSNGSFASQLKNDKTIG------VDKLENILHQY 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + L D + + T + + Sbjct: 57 PDINSEWLLKGNGDMLLYDTVNEGRAFYRKTEKTQSRNIPVYDIETTAEIADLLGETNSQ 116 Query: 126 PHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR------LLIKPR 176 + D D SM PL + GDI++ + + + Sbjct: 117 KPISFLNVPRISQYDGALYLLDDSMYPLLKSGDIVVYKKINNLENNIIWGEMYLIYVSSD 176 Query: 177 TGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + + R + N Y +S I+ IA I Sbjct: 177 NNEFFLIRYLRQSEREGYAQFAAYNSHYQTQEFPISSIKAIALI 220 >gi|256370857|ref|YP_003108681.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256007441|gb|ACU53008.1| transcriptional regulator, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 169 Score = 49.4 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E + R LT + L R+AG+ + + + R PS + +++AA Sbjct: 2 DSVGEVLREARRRAGLTQAELGRRAGVTQSVVSAYESGA-----RQPSVSMLARLVAAAG 56 >gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688943|ref|ZP_07631389.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578220|gb|ADL52232.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 226 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/197 (8%), Positives = 49/197 (24%), Gaps = 25/197 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTESIFKIL-AATN 66 + + + + + LT A G+ + K + +R +++K+ Sbjct: 3 LQQKLQALRKEKGLTQEEFAETIGVSRQAVAKWEAGQSYPDLDRLIEISNLYKVSIDKLV 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + I L + S + + + E Sbjct: 63 KDCKENCSFNEEKTYKDYADNEMICFLCKAKKVTYAGSGSETVSSRPNSHDLEYTEGNLK 122 Query: 127 HNGIY-----------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--- 166 + Y + + + + D + K + +++ Sbjct: 123 YIDTYLGGEKFVGEEALWKDNVPVWSMNYIGRIIDEGFSGSFLKAALSLVSKDYPYRGPM 182 Query: 167 ---CGDRLLIKPRTGDI 180 GD + G+ Sbjct: 183 VYANGDYIYHCIVNGEF 199 >gi|210608450|ref|ZP_03287826.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] gi|210153061|gb|EEA84067.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] Length = 157 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH + I + + + LA K G++ S +K +R +P+ E++ KI+ Sbjct: 7 KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87 + T +LL + +EK+ Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84 >gi|15837102|ref|NP_297790.1| phage-related repressor protein [Xylella fastidiosa 9a5c] gi|9105353|gb|AAF83310.1|AE003899_2 phage-related repressor protein [Xylella fastidiosa 9a5c] Length = 143 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ AI + + +TP+ +A G+ S + G + + PS Sbjct: 1 MLTGEQLGRAIKQAMQLKGVTPTKMAEHFGVKAPSVYGWIKEGRISKEKLPSL 53 >gi|150391108|ref|YP_001321157.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950970|gb|ABR49498.1| putative transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 89 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ L+ LA K G ++ ++ + G PS E + K+ A + Sbjct: 29 IKKEIIQLRLAQGLSQKELAEKVGTKQSAISRLE-----GGEYNPSIEFLSKVAHALGKE 83 Query: 69 ICQLLD 74 I Sbjct: 84 IHINFH 89 >gi|331082365|ref|ZP_08331491.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400851|gb|EGG80452.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium 6_1_63FAA] Length = 90 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I A+ + N+T LA K G+ ++ + R PS + I ++ Sbjct: 29 DIIRAMVAARKERNMTQKELAEKTGITQADISRIENGT-----RNPSLDMIKRLAKGMGM 83 >gi|319937527|ref|ZP_08011932.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] gi|319807367|gb|EFW03976.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] Length = 182 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 18/164 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + R+ L+ +A+ + S +K ++ + PST+++ ++ + + Sbjct: 3 IGEKIRELRIRNQLSQESIAQLLDVSRQSVSKWEKGLSK-----PSTDNLLRLSEIFSVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---------GNKWNTVG 119 + L+D + E L+ G+F G ++T Sbjct: 58 VEDLIDNDIQFKKDYESTSFFKEFLFRKKVLIPISIFLGLFIVIFLFAVVMKGYGYDTNT 117 Query: 120 VPEIRSPHNG----IYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 V I Y I + + +++ Sbjct: 118 VNFIAGLSGFFMFCAYLIFLVMILKYVYKDCQMRHIQPIGYVLV 161 >gi|303230899|ref|ZP_07317643.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] gi|302514412|gb|EFL56410.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] Length = 91 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI + E LT LA ++G+ ++ + +R S +++ KI A N Sbjct: 35 AITKAREAAGLTQRELAERSGVPQSTIARIERGYNT------SIDTLSKIAFALN 83 >gi|313651389|gb|EFS15785.1| UmuD protein [Shigella flexneri 2a str. 2457T] Length = 70 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 ++ ++ G ++ G+ K+L + + LM N + V +E + Sbjct: 1 MDRSLTAEHGSIVVALVD-GEFTVKILQTFP--KLMLMPSNPAFKPIPVNPDTLEIWGVV 57 >gi|284045281|ref|YP_003395621.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949502|gb|ADB52246.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 201 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/135 (11%), Positives = 40/135 (29%), Gaps = 5/135 (3%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ + ++ + LT + +A AG+ ++ ++ + R + + + A Sbjct: 28 EERVRGRLRQLRDERGLTLAEVAFAAGMATSTLSRLETGA-----RRLTLAHLPALARAL 82 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 +L+ P + F P G P+ Sbjct: 83 GIATDELVAAPRRAVAPDRSPWTTADGVTFVPLTEPGDGPRVCRLLLPAGLHHPAPKTHE 142 Query: 126 PHNGIYAIQTQDTRH 140 H ++ I + Sbjct: 143 GHQRLHVIDGRLRLV 157 >gi|158335678|ref|YP_001516850.1| SOS mutagenesis protein UmuD [Acaryochloris marina MBIC11017] gi|158305919|gb|ABW27536.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina MBIC11017] Length = 81 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 GD+LI++ ++ G ++I G+ K L ++I L + N Y V+ Sbjct: 6 IFSGDLLIVDRSLTPVDG-AVVIAVLNGEFTVKQL-RLSQKTILLAAANADYTPIVVKAG 63 Query: 211 DIEWIARIL 219 + ++ Sbjct: 64 MEFQVWGVV 72 >gi|15837516|ref|NP_298204.1| hypothetical protein XF0914 [Xylella fastidiosa 9a5c] gi|9105835|gb|AAF83724.1|AE003931_1 hypothetical protein XF_0914 [Xylella fastidiosa 9a5c] Length = 141 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + + R+ E L+ LA +G+ S N +G ++ P +I K Sbjct: 16 MNSLAIRAVADNVRRLLEARRLSQKELAVLSGVSQKSINDLLNYGGT-VSKEPRLGTIEK 74 Query: 61 ILAATNETICQ 71 + Q Sbjct: 75 LAKGFGIATWQ 85 >gi|326330669|ref|ZP_08196973.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] gi|325951510|gb|EGD43546.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] Length = 184 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 26/177 (14%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I E +T + LA +G+ +K +R + P+ + ++ A Sbjct: 4 DALAANIRSAREAAGMTVAALAEASGVSRAMISKIERGEAQ-----PTAVLLARLSGALE 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIR 124 T+ +L+ + + + +G + P V P Sbjct: 59 LTLSELIARVE---GDAVRVARRAEQPEWTDPETGYVRRAVSPPAREILELVEVEFPAGA 115 Query: 125 S--PHNGIYAIQTQDTRH------KTQDTSM--------LPLYRKGDILILNSAIQV 165 S YA + Q + + L L D + +N + Sbjct: 116 SVAAPASAYAFKEQQIWVLSGHLRFVEGDLVHELDAGDCLQLGPPADCVFVNPTDEP 172 >gi|302388210|ref|YP_003824032.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198838|gb|ADL06409.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 177 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 14/138 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + LT LA +A L ++ +R PS ++ IL Sbjct: 2 DIGAKLKELRVLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLLDILQCLGT 56 Query: 68 TICQLLDLPFS--------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++ + + D E + + + P+ + + T Sbjct: 57 SVGEFFNESPEEQIVFGKSDYFEKHDAELKNAIKWIIPNAQKNMMEPILLTLEAGGETYP 116 Query: 120 VPEIRSPHNGIYAIQTQD 137 Y +Q Sbjct: 117 -DNPHEGEEFGYVLQGNI 133 >gi|225019513|ref|ZP_03708705.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] gi|224947734|gb|EEG28943.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] Length = 154 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 10/70 (14%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T F+H + ++ LT + LA+ + + + G R P ++ ++ Sbjct: 45 TMFAH-----RLRQLRLERGLTQAALAKHLDVSQGTVGNWE-----GGKREPDFATVARL 94 Query: 62 LAATNETICQ 71 A T+ Sbjct: 95 AALFGTTVDD 104 >gi|160945921|ref|ZP_02093147.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] gi|158443652|gb|EDP20657.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] Length = 169 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 5/88 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I R ++ L+ LA K G+ + K + P E I + + Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLA-----SPELEKIVSLSECFKVSTD 66 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 LL ++ ++ + + Sbjct: 67 YLLKDNLTEPTPPQESALKGKQRMSWRA 94 >gi|89097356|ref|ZP_01170246.1| post-exponential-phase response transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088179|gb|EAR67290.1| post-exponential-phase response transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 115 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R+ + + LA K+G+ + + +R + PS + + K+ A + Sbjct: 2 VGERIKRLRLLRGFSINELAEKSGVSKSYLSYIERDI----QKNPSLQVLSKLAATLGTS 57 Query: 69 ICQ 71 + + Sbjct: 58 VEE 60 >gi|282865815|ref|ZP_06274865.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559459|gb|EFB65011.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 721 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 46/153 (30%), Gaps = 10/153 (6%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 +R+ + H LT +A + + + E R P E+ ++L E Sbjct: 25 ERLRKAHGLTQEQVAAALKVRRPTVVSWENGRTE--PRPPQREAYARLLEKLAELYPARA 82 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR------SPH 127 D E + + + F P G TV P + S Sbjct: 83 ADDAEDTHEAEAPQTSG--VPASTTAPHAPFTPPPAPEGTGAPTVEHPPRQAVAARPSTG 140 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + A + R + P + G + +++ Sbjct: 141 SRPSASRRPAARKAAPKDTHDPRFENGPLAVVD 173 >gi|169828759|ref|YP_001698917.1| Signal peptidase I T [Lysinibacillus sphaericus C3-41] gi|168993247|gb|ACA40787.1| Signal peptidase I T [Lysinibacillus sphaericus C3-41] Length = 188 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 11/86 (12%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGRSIDL--- 195 K Q SM P Y DI+I++ ++ + P ++ K +I G +++ Sbjct: 40 IKVQGASMYPTYHDKDIIIVSKTSKIERFDQIVFQSPVEDELYIKRVIGLPGDKVEMKDD 99 Query: 196 ------MSLNCCYPVDTV-EMSDIEW 214 + N Y + + + Sbjct: 100 VLYVNGKAYNEDYVNRETDDPNQLRI 125 >gi|160884374|ref|ZP_02065377.1| hypothetical protein BACOVA_02352 [Bacteroides ovatus ATCC 8483] gi|255691687|ref|ZP_05415362.1| putative helix-turn-helix protein [Bacteroides finegoldii DSM 17565] gi|156110113|gb|EDO11858.1| hypothetical protein BACOVA_02352 [Bacteroides ovatus ATCC 8483] gi|260622760|gb|EEX45631.1| putative helix-turn-helix protein [Bacteroides finegoldii DSM 17565] Length = 150 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 6/71 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I EAI++ L+ S L RK G+ N+ R + K+ A Sbjct: 10 IGEAIEKRRNELGLSKSELGRKIGVPQQHVNRILERETMETKR------LIKVSEALGFN 63 Query: 69 ICQLLDLPFSD 79 L Sbjct: 64 FFTLFCPVQHQ 74 >gi|259418297|ref|ZP_05742215.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259345692|gb|EEW57536.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 190 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + E+ ++ LA+K G+ ++ + + + PS ++ +IL Sbjct: 12 ELGQRLRAVREQSGVSQRALAKKTGVPNSTISLIESGKMN-----PSVGALRRILDGVPI 66 Query: 68 TICQLLDLP 76 ++ + Sbjct: 67 SLSEFFAFE 75 >gi|283796930|ref|ZP_06346083.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075340|gb|EFE12704.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 111 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 5/107 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I + + + ER ++ LA K GL + +R +P E + +L Sbjct: 4 KRIGKRVKQCRERLGISQEELAEKTGLTANYISTVERGMS-----FPRCEKLIILLNGLE 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + + E L P Sbjct: 59 VSADAIFCDVLEHSTSYKSSELSEKLASLSPQAQKRILQMVELMIQQ 105 >gi|83645643|ref|YP_434078.1| hypothetical protein HCH_02876 [Hahella chejuensis KCTC 2396] gi|83633686|gb|ABC29653.1| hypothetical protein HCH_02876 [Hahella chejuensis KCTC 2396] Length = 229 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 70/229 (30%), Gaps = 19/229 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLT------PSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M + + +I R +++ L +K G + ++ + + Sbjct: 3 MGTLNISEIRRINLRKIAEKHVSGHDRKGYQALTKKIGCHHSYLSQILKENP---TKDIG 59 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 K A L P+ ++E + + F + P Sbjct: 60 PGFARKAEKALGLEPHSLDTPPWLSNLKDNIPDREQSIQEGIIKVAETFLITTTLPVMEV 119 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 N ++ H A + D SM P+ + ++ ++ A+ + G L Sbjct: 120 VNGNLKETGQTRHILGNASD-RAFITHAIDRSMEPIINQHQLIAVDPALPLEDGVICLYW 178 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI---EWIARIL 219 G ++ K L G ++ N Y + + + +++ RI Sbjct: 179 DGGGAVMGKYLGRNGG---EIHPANEDRYRPIYL--NQVTGGKYLGRIF 222 >gi|83593377|ref|YP_427129.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576291|gb|ABC22842.1| Transcriptional Regulator, XRE family with Cupin sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 188 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + E L+ LAR+AG+ + + ++ PS S+ K+L Sbjct: 4 DVGARLRAIREAKALSQRELARRAGVTNGTISLIEQNQS-----SPSVASLRKVLQGIPM 58 Query: 68 TICQLLDLPFSDGRT 82 T+ + Sbjct: 59 TLAEFFSQETPPPDQ 73 >gi|139438005|ref|ZP_01771558.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] gi|133776202|gb|EBA40022.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] Length = 238 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + GLARK GL + +K +R P TE++ + ++ Sbjct: 7 QRLADLRRSKGFSQEGLARKLGLSRQAVSKWERAES-----SPDTENLISLAKLYGVSLD 61 Query: 71 Q 71 + Sbjct: 62 E 62 >gi|326331111|ref|ZP_08197409.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325951152|gb|EGD43194.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 181 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 49/187 (26%), Gaps = 9/187 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + + + +T LA L ++ +R PS S+F+I Sbjct: 2 QRLGSRVRELRKAQGMTLVQLAEATDLSHPFLSQIERGMAR-----PSMSSLFRIAQTLG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T LL + +G G + + + Sbjct: 57 TTQQGLLADSVESPSAGPAAVVRRSDPGTAEASNGAV---QALVAGADHAFIPMEFVGDE 113 Query: 127 -HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 Y +D ++ + ++ + G + ++L Sbjct: 114 TSWDRYWQHEEDEFVYVVGGTLRIDLDGEEQVMETADSVYIPGGVRHRWASADGELFRLL 173 Query: 186 ISRRGRS 192 + + R Sbjct: 174 VVKEQRG 180 >gi|307946613|ref|ZP_07661948.1| helix-turn-helix domain-containing protein [Roseibium sp. TrichSKD4] gi|307770277|gb|EFO29503.1| helix-turn-helix domain-containing protein [Roseibium sp. TrichSKD4] Length = 130 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + E I R + L+ + LAR+ G+ ++ + E R + Sbjct: 14 MPETTDYTLGERICRARDAAGLSTAQLARRLGVKSSTLQGWESDRSE--PRSNKLVLLAG 71 Query: 61 ILAATNET 68 +L + Sbjct: 72 VLNVSPTW 79 >gi|300118308|ref|ZP_07056055.1| transcriptional regulator [Bacillus cereus SJ1] gi|298724277|gb|EFI64972.1| transcriptional regulator [Bacillus cereus SJ1] Length = 373 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 54/194 (27%), Gaps = 14/194 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I++ I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIYKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 N +I +L+ G+ K F ++ + Sbjct: 56 YFNISIDELICYTPQMGQEDIKNLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPL--- 112 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182 + + + + + L + GD L+ + T Sbjct: 113 ---LLQMGLLFINHHMLTGDTDKRIEILEEAMSLFSRVQEE--SGDVSLVKEAVTFQATC 167 Query: 183 KVLISRRGRSIDLM 196 ++++R + L+ Sbjct: 168 YLILNRPNEVLQLL 181 >gi|290957472|ref|YP_003488654.1| hypothetical protein SCAB_29922 [Streptomyces scabiei 87.22] gi|260646998|emb|CBG70097.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 144 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 10/105 (9%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179 PE+ A+ + SM+P R GD L+++ ++ GD L+++ Sbjct: 2 PELSRESERGGALLPFGVA-EVTGPSMVPTLRHGDRLLVHYGARLRVGDVLVLRHPFQQD 60 Query: 180 -IVAKVLISRRGRSIDLMSLNCCYP-----VDTVEMSDIEWIARI 218 +V K + RR ++ N Y V ++ + R+ Sbjct: 61 LLVVKRVAERRDGGWWVLGDN-AYAGGDSTDYGVVPDEL-VLGRV 103 >gi|228477738|ref|ZP_04062367.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250627|gb|EEK09838.1| conserved domain protein [Streptococcus salivarius SK126] Length = 69 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 17/41 (41%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 ++ + + R L S LA+ AG+ S + +R Sbjct: 2 RLKNRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTP 42 >gi|225628403|ref|ZP_03786437.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo] gi|237816216|ref|ZP_04595211.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] gi|225616249|gb|EEH13297.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo] gi|237788678|gb|EEP62891.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] Length = 652 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + +I + R+ +R LT GLA + + + + + P E+++ Sbjct: 1 MTMSNSAEIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWS 55 Query: 61 ILAATNETICQ 71 + A + Sbjct: 56 LANALGIEFGE 66 >gi|226325896|ref|ZP_03801414.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|225206020|gb|EEG88374.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|291546627|emb|CBL19735.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 129 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ L+ LA A L + + R PS ES+ KI A T Sbjct: 8 IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENA-----KRKPSLESLIKISNALEIT 62 Query: 69 ICQLLDLPFSDGRTTE 84 I +LL T Sbjct: 63 IDELLYGNLLYNPTEY 78 >gi|153812213|ref|ZP_01964881.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] gi|149831620|gb|EDM86707.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] Length = 112 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 5/106 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I R + L S + KAGL + +R PS E I K+ N Sbjct: 11 EIGKRIARRRKALGLKQSEVEEKAGLGQKYLSNIERSISI-----PSIEVIMKLAYVLNT 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 T + L + KK E+ + + Sbjct: 66 TPDEFLIGTLNSNDEEWKKSAELLRPLNSKQLNLVHNFLIWLSEQD 111 >gi|302562106|ref|ZP_07314448.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302479724|gb|EFL42817.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 194 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 49/170 (28%), Gaps = 20/170 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + H + LA ++G+ ++ ++++R P+ + ++ A Sbjct: 16 RLGGRLAELRIEHGWSLGELAERSGISRSTLSRAERAET-----SPTASLLNRLCAVYGR 70 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-----------GGFFDSGVFPTGNKWN 116 T+ QLL ++ + + G G G + Sbjct: 71 TMSQLLSEIEAEPAPLVRAADQPVWEDRASGFVRRSVSPPHRGLRGELVEGRLAVGADIS 130 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 P + I+ ++ +GD L L Sbjct: 131 Y-DRPPVPGLEQHIWVLEGS---LTVTAQDAEHRLGEGDCLRLRVWGPTR 176 >gi|239930441|ref|ZP_04687394.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291438799|ref|ZP_06578189.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291341694|gb|EFE68650.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 191 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + A + L ++ E E + Sbjct: 56 VAKALRISAETLYVRAGILDAERDRDEVETRAVLLAD 92 >gi|126697864|ref|YP_001086761.1| DNA-binding protein [Clostridium difficile 630] gi|255099463|ref|ZP_05328440.1| DNA-binding protein [Clostridium difficile QCD-63q42] gi|255305320|ref|ZP_05349492.1| DNA-binding protein [Clostridium difficile ATCC 43255] gi|115249301|emb|CAJ67114.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 364 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 14/198 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + +T LA G+ S +K + +P + ++ N Sbjct: 5 NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQS-----YPDITFLPQLATYFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T+ +L+ + K F D ++ + Sbjct: 60 TVDELICYEPQMMKEDINKLYNKLCKDFTVKPFDEVMDEIREIIKKYYSCFPLIFRM--- 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 G+ + D + L + + + N D + ++ + +L++ Sbjct: 117 -GLLIVNHYDI---VDEKKRELLISEALEIFIRIQETCNDIDIC-RQAKSMEATCYILLN 171 Query: 188 RRGRSIDLMSLNCCYPVD 205 + + IDL+ N +P+ Sbjct: 172 QPIQVIDLLQ-NSNFPMI 188 >gi|323352640|ref|ZP_08087610.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121676|gb|EFX93422.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|332362630|gb|EGJ40428.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 69 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 2 KLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 56 Query: 68 T 68 Sbjct: 57 N 57 >gi|311278399|ref|YP_003940630.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747594|gb|ADO47346.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 76 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 5/72 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + ++ + L+ A K GLD T + +R R P+ E I + Sbjct: 8 QAQFGAHLKKLRLQSGLSQEAFADKCGLDRTYVSGIERGV-----RNPTLEVIGVLAKGL 62 Query: 66 NETICQLLDLPF 77 I +L Sbjct: 63 GMDIKELFSFER 74 >gi|251790166|ref|YP_003004887.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538787|gb|ACT07408.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + L+ A K GLD T + +R R P+ E ++ + A + Sbjct: 11 LGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGV-----RNPTLEVLYILAAGLHTD 65 Query: 69 ICQLLDLPFS 78 + L Sbjct: 66 LTTLFVFRDP 75 >gi|210621510|ref|ZP_03292670.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] gi|210154709|gb|EEA85715.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] Length = 136 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 5/102 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + + +T LA+K G+ + +K +R +P SI K+ + ++ Sbjct: 7 GEMISSLRKDRGMTQLDLAKKMGVTDKAVSKWERDLS-----FPDINSIPKLAEIFDVSV 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +L+ + E+ KE G + Sbjct: 62 DELMQVKSDVNVGEEEVVKESKFEEVMDVAPKGIGLAMGIAV 103 >gi|197105530|ref|YP_002130907.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196478950|gb|ACG78478.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 128 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + L+ LA AG+ K +R S + +I Sbjct: 16 VGARIRLLRKLKGLSQQALAEAAGVTFQQIQKYERGANR-----VSASMLARIARTLGVP 70 Query: 69 ICQLL 73 + ++ Sbjct: 71 VAEMF 75 >gi|94971398|ref|YP_593446.1| hypothetical protein Acid345_4372 [Candidatus Koribacter versatilis Ellin345] gi|94553448|gb|ABF43372.1| hypothetical protein Acid345_4372 [Candidatus Koribacter versatilis Ellin345] Length = 238 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 66/234 (28%), Gaps = 23/234 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ + ++ LT LA K G + R S +++ +ILAA Sbjct: 8 QEQLRRLLRSRIDQGELTGMMLAEKTGFRQAHISNFLNH-----KRGLSFDAVDRILAAE 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + ++ L+ + R + E F + + Sbjct: 63 DLSVLDLVPADDINSRASIPPPPEDEYANILLVSPQRAFQP-QVHAREVLEVLKFKQTFL 121 Query: 126 PHNGIYAIQTQDTRH--------KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLI 173 + + T + +M P G ++L+ G++ + Sbjct: 122 RRMKAEPSRQRATWLRFVMMKTSRACTEAMSPRVGPGCTVLLDRHYNSLTAYRKGEKTMY 181 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIE----WIARILWAS 222 R G R + L + + SD+ + R+ + S Sbjct: 182 AIRVGGDTIVRYAHRDDDMLVLEPESRDARTRILHIPSDLTAEDLIVGRVAYVS 235 >gi|326791705|ref|YP_004309526.1| hypothetical protein Clole_2627 [Clostridium lentocellum DSM 5427] gi|326542469|gb|ADZ84328.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 176 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ LT LA++ G+ + K ++ R P+ E+I K+ T Sbjct: 2 LGNNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGE-----REPNLETIEKLAVTLKVT 56 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 +LL + E Sbjct: 57 PYELLGNLNNSVALNHAPMAE 77 >gi|293606756|ref|ZP_06689108.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] gi|292814847|gb|EFF73976.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] Length = 184 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 10/163 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + + L+ LA++ GL + +K +R E PS ++ ++ A + Q Sbjct: 7 RLRTLRRQQALSLEQLAQRTGLTKSYLSKLERGLSE-----PSISTVLRLAEAYGVGVSQ 61 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L+ + + G G + G++ P + P Sbjct: 62 LVGADDAAQDEVVSVVRVADREALQRGGPGSQYHYESL-AGHRKIKAMEPFVVHPPRDF- 119 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNCGDRLLI 173 L + + + + ++ GD + Sbjct: 120 --PDAAAVFPHPGEEFLLVLKGAIEVQVGERQFRLETGDSVYF 160 >gi|325678958|ref|ZP_08158556.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109462|gb|EGC03680.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 181 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 22/210 (10%), Positives = 50/210 (23%), Gaps = 44/210 (20%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + +LT + L+++ G+ + ++ + R ++ + L T + Sbjct: 6 ENLRAAMAERSLTQAELSKRTGISKSFISQYLSGKF--KPRDDKLSALAQALGTTKGALL 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 P + + P Sbjct: 64 GYESR-------------------SADGVENVASGIIKVPVYSADD----PHNAWGEEYA 100 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI--SR 188 A + +D P GD L+++ G ++K + + R Sbjct: 101 GAEHGNYRFYICRDDKNRPFVMFGDYLLVSVDEIGPTGLYAVVKEGVERVYFREFSEPRR 160 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L I R+ Sbjct: 161 EANELGLR-----------------IIGRV 173 >gi|291454087|ref|ZP_06593477.1| signal peptidase [Streptomyces albus J1074] gi|291357036|gb|EFE83938.1| signal peptidase [Streptomyces albus J1074] Length = 156 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRS 192 + + SM+P GD L++ +V GD ++++ +V K + RR Sbjct: 21 GRFGVVEVDGPSMVPTLEHGDWLLVRYGARVRPGDVVVLRHPFQQDLLVVKRAVERREGG 80 Query: 193 IDLMSLN 199 ++ N Sbjct: 81 WWVLGDN 87 >gi|167565153|ref|ZP_02358069.1| aldehyde dehydrogenase-like protein [Burkholderia oklahomensis EO147] Length = 183 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 19/195 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + ++ L+ LA++AG+ + + ++ PS S+ K+L Sbjct: 3 NEVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQ-----SRVSPSVGSLKKLLECIP 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + + R+ + E+P L G V P + Sbjct: 58 MSLAEFFTFEVDEDRSVVSRRGEMPNLGNDAIGFYLAGSGVKDRNMCIMREVYQP-LADT 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + A + L + G +L+ GD + R Sbjct: 117 GTEMLAHAGHEGGVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFR 164 Query: 187 SRRGRSI-DLMSLNC 200 + + +++S N Sbjct: 165 NPSAEHVCEVVSANS 179 >gi|83589152|ref|YP_429161.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572066|gb|ABC18618.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 101 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E+H+LT LA+ +G+ + ++ + ++ P+T ++ KI +A T Sbjct: 3 LGNRLKELREKHHLTQYRLAKLSGVSQSHISEIESG-----DKEPTTGTLMKICSAMGLT 57 Query: 69 ICQLLDLPFSDGRT 82 + + Sbjct: 58 LAEFFTEETPSLPP 71 >gi|29654276|ref|NP_819968.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA 493] gi|161830755|ref|YP_001596754.1| DNA-binding protein [Coxiella burnetii RSA 331] gi|212212602|ref|YP_002303538.1| transcriptional regulator [Coxiella burnetii CbuG_Q212] gi|29541543|gb|AAO90482.1| transcriptional regulator [Coxiella burnetii RSA 493] gi|161762622|gb|ABX78264.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA 331] gi|212011012|gb|ACJ18393.1| transcriptional regulator [Coxiella burnetii CbuG_Q212] Length = 183 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 12/138 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + ++ LA AG+ + K + ++ P+ + K+ A +T+ Sbjct: 6 ERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQ-----PTLDVAGKLAVALGKTLS 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPE--IRSP 126 ++ P + + + + + + + G+K V P + Sbjct: 61 EMFHSPQT---PSVIQLTTEEQAIWIDAQNIKRRNISPILEGSKVEWLFVEFPPGASLTK 117 Query: 127 HNGIYAIQTQDTRHKTQD 144 Y +T+ T+ Sbjct: 118 PLTPYTPETEKYILITKG 135 >gi|320159692|ref|YP_004172916.1| hypothetical protein ANT_02820 [Anaerolinea thermophila UNI-1] gi|319993545|dbj|BAJ62316.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1] Length = 798 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM PL+ KGD+++L A GD ++ + V ++ RR L Sbjct: 39 YVIVSGDSMEPLFHKGDLVLLRRAPFYEVGDIVVYRYPGIGAVIHRIVDRRLDRFVLKGD 98 Query: 199 N----CCYPVDTVEMSDI 212 + Y +I Sbjct: 99 HNTWVDGYEP---APDEI 113 >gi|291441034|ref|ZP_06580424.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291343929|gb|EFE70885.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 190 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 5/138 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + R+ + +T + L+ G+ ++ ++ + R PS E + I A Sbjct: 9 DVGPRLRRIRKEREVTLAALSEATGISVSTLSRLESG-----LRRPSLELLLPIAQAHQV 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P K E P + P + Sbjct: 64 PLDELVGAPPVGDPRVRSKPIERYGRTHWPLTRQPGGLQAYKVLEPRRKLEPEPRTHEGY 123 Query: 128 NGIYAIQTQDTRHKTQDT 145 +Y + + ++ Sbjct: 124 EWLYVLSGRLRLVLGEND 141 >gi|289770224|ref|ZP_06529602.1| DNA-binding protein [Streptomyces lividans TK24] gi|289700423|gb|EFD67852.1| DNA-binding protein [Streptomyces lividans TK24] Length = 154 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 14 MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 68 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + A + L ++++ E + Sbjct: 69 VAKALRISAETLYVRAGILDAERDREDVETRAVILAD 105 >gi|170755295|ref|YP_001781771.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169120507|gb|ACA44343.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] Length = 149 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I ++ + ++T LA+ G+ + + R PS E + KI + Sbjct: 4 ERIKKLRKERDITQEELAKNIGVSTSMVGMYETNA-----RKPSYEVLSKIAKYFRVS 56 >gi|83589146|ref|YP_429155.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572060|gb|ABC18612.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 128 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + E+ LT LA + + ++ + R P E + + A N + Sbjct: 3 IGKRIKELREKIGLTQEELAERVQISRSALANYESGY-----REPKGEILVRFAKALNTS 57 >gi|47565513|ref|ZP_00236554.1| transcriptional regulator, putative [Bacillus cereus G9241] gi|47557503|gb|EAL15830.1| transcriptional regulator, putative [Bacillus cereus G9241] Length = 181 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + K++K I S F + + VP + Sbjct: 63 SFLLEDTNTDDLIVRPHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 ENLLEHKGEELAFVLDG 133 >gi|317062103|ref|ZP_07926588.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687779|gb|EFS24614.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 184 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 6/137 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + L+ LA K L + ++ ++ PS E++ KI + + Sbjct: 5 IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKA-----SPSIENLKKIATSLDVK 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L++ K+ E + S + + + + Sbjct: 60 VSYLIEDEEETRNMEVVKKDERKYIESIDSNTKMALLTTSNIDKTMEPILYEIGPNGESG 119 Query: 128 NGIYAIQTQDTRHKTQD 144 Y ++ + Sbjct: 120 RSFYTHNGEEFIFIIEG 136 >gi|307329866|ref|ZP_07609020.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884477|gb|EFN15509.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 140 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L ++ + ++ Sbjct: 56 LAKALRISAETLYVQAGILDERDREETEVRSVI 88 >gi|228920539|ref|ZP_04083884.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839169|gb|EEM84465.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 181 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K++K I S F + + +P + Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTIPPNTASS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 ENVLEHKGEELAFVLDG 133 >gi|317054283|ref|YP_004118308.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952278|gb|ADU71752.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 192 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 7/135 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + E+ + + LA +G+ +K +R P+ + ++ + + Sbjct: 15 RIGQKVKAEREKRGWSLTDLAENSGVSRAMIHKIERGES-----SPTATLLARLAGSFDM 69 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ QL+ L T ++ ++ G P +V +P S Sbjct: 70 SMSQLIALSEVQTGTLIRQAQQPVWQDPETGYIRRHVSPGQIPVDLV--SVDLPAGVSVP 127 Query: 128 NGIYAIQTQDTRHKT 142 + ++ Sbjct: 128 MPAISYLSRRQLIWV 142 >gi|257467814|ref|ZP_05631910.1| MerR family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 183 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 6/137 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + L+ LA K L + ++ ++ PS E++ KI + + Sbjct: 4 IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKA-----SPSIENLKKIATSLDVK 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L++ K+ E + S + + + + Sbjct: 59 VSYLIEDEEETRNMEVVKKDERKYIESIDSNTKMALLTTSNIDKTMEPILYEIGPNGESG 118 Query: 128 NGIYAIQTQDTRHKTQD 144 Y ++ + Sbjct: 119 RSFYTHNGEEFIFIIEG 135 >gi|237733521|ref|ZP_04564002.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383354|gb|EEO33445.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 211 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH + I + + + LA K G++ S +K +R +P+ E++ KI+ Sbjct: 7 KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87 + T +LL + +EK+ Sbjct: 60 EVLDVTPNELLSGEWKYINQSEKEV 84 >gi|111220424|ref|YP_711218.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111147956|emb|CAJ59622.1| Putative DNA-binding protein (partial match) [Frankia alni ACN14a] Length = 328 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + I ++ LA++AG+ ++ +R R PS E + + Sbjct: 1 MAALNVRDLGDFIRDQRRAAQISLRQLAKQAGVSNPYLSQIERG-----LRRPSAEILQQ 55 Query: 61 ILAATNET 68 I A + Sbjct: 56 IAKALRIS 63 >gi|332654130|ref|ZP_08419874.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] gi|332517216|gb|EGJ46821.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] Length = 259 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 9/101 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++++E + ++ L+ GLA G+ + K + P +++ Sbjct: 1 MEMEFQQRLYE----LRKQSGLSQEGLADLLGVSRQAVQKWEAGTSR-----PDLDNLAA 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + N ++ L+ + ++ + Y P Sbjct: 52 LGRYFNVSLDYLVTGQEAQVSPSQVTTTIVNNYYTPFHYEY 92 >gi|328954168|ref|YP_004371502.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454492|gb|AEB10321.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM 11109] Length = 172 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 5/137 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + ++ +T LAR+A L + K + G + P+ E+I + + T Sbjct: 6 FSIIRTLRKKRGITAEELARRANLTRATVAKIE-----GGDSNPTIETIEALSSVFQLTS 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +L+ L + + F+ PE Sbjct: 61 SELIRLAEVVHCEMAITKTFAADGFKGHHIWFPSFEVYCIRADAGIRKESDPEFHENTAE 120 Query: 130 IYAIQTQDTRHKTQDTS 146 I + + + + + S Sbjct: 121 ICLVLSGEVKVTVRGQS 137 >gi|319936497|ref|ZP_08010913.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808612|gb|EFW05164.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 241 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K++E + + ++ + A G+ S +K + P E + +I Sbjct: 2 KLYENLSSLRKQKGYSQEEFAYLLGVSRQSVSKWESGASI-----PELERLVEIANIFEV 56 Query: 68 TICQ 71 ++ + Sbjct: 57 SLDE 60 >gi|194017717|ref|ZP_03056327.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC 7061] gi|194010617|gb|EDW20189.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC 7061] Length = 113 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 4/107 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 4 IGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + LL + + L+ + F W Sbjct: 60 VHTLLHEKDETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQIW 106 >gi|86361163|ref|YP_473050.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86285265|gb|ABC94323.1| putative transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 203 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + H L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 25 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 79 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 + + + +E Sbjct: 80 GLAEFFAFEPERPKKAFYAAQE 101 >gi|86143509|ref|ZP_01061894.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis MED217] gi|85829956|gb|EAQ48417.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis MED217] Length = 71 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI I ++ E+ T S LAR+ G D + K + + P+ S+F+I A Sbjct: 8 KKIGNRIVKLREQKGWTQSDLARECGKDRQAIEKLENGKVN-----PTAYSLFEISKALK 62 Query: 67 ETICQ 71 + Q Sbjct: 63 IELYQ 67 >gi|71276456|ref|ZP_00652732.1| Helix-turn-helix motif [Xylella fastidiosa Dixon] gi|71901271|ref|ZP_00683370.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1] gi|170731009|ref|YP_001776442.1| XRE family transcriptional regulator [Xylella fastidiosa M12] gi|182682388|ref|YP_001830548.1| helix-turn-helix domain-containing protein [Xylella fastidiosa M23] gi|71162772|gb|EAO12498.1| Helix-turn-helix motif [Xylella fastidiosa Dixon] gi|71728962|gb|EAO31094.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1] gi|167965802|gb|ACA12812.1| putative transcriptional regulator, XRE family [Xylella fastidiosa M12] gi|182632498|gb|ACB93274.1| helix-turn-helix domain protein [Xylella fastidiosa M23] gi|307578669|gb|ADN62638.1| hypothetical protein XFLM_03235 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 126 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + + R+ E L+ LA +G+ S N +G ++ P +I K Sbjct: 1 MNSLAIRAVADNVRRLLEARRLSQKELAALSGVSQKSINDLLNYGGT-VSKEPRLGTIEK 59 Query: 61 ILAATNETICQ 71 + Q Sbjct: 60 LAKGFGIATWQ 70 >gi|296141343|ref|YP_003648586.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029477|gb|ADG80247.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 466 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 9/100 (9%), Positives = 23/100 (23%), Gaps = 5/100 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + L+ + LA + P+ N+ + R S + KI Sbjct: 6 VGARLRGLRKERGLSQASLAEALEISPSYLNQIEHDV-----RPLSVPVLLKITDVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 + ++ Sbjct: 61 TSFFNSQDQTRLIAELREVTMDVDAPTSTEELSDLARDHP 100 >gi|220909139|ref|YP_002484450.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865750|gb|ACL46089.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 81 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I + + + +R L+ LA + G+ S N+ + + + I K Sbjct: 1 MPART-EGIADRLRGLRQRLGLSQQQLATQLGVSFRSVNRWENGHAVPLP--LALKQIEK 57 Query: 61 ILAATN 66 + Sbjct: 58 LQQELE 63 >gi|332983435|ref|YP_004464876.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332701113|gb|AEE98054.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 127 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + E ++ + LA G+ + + + R P ++I KI +I Sbjct: 1 MNRIKELREEAKISQAELASILGVTQQALSNYENG-----LREPDLDTINKIANYFGVSI 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLL 93 LL ++ + Sbjct: 56 DYLLCRTNVRNSDVIEEAIKDDPE 79 >gi|160932466|ref|ZP_02079856.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] gi|156868425|gb|EDO61797.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] Length = 114 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 5/107 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + E+ LT LA K GL P + +R +PS E + I+ T Sbjct: 10 VGSRFKQYREQSGLTQETLAEKVGLSPNYISAIERGVN-----FPSLEKLILIINEIGAT 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 Q+ + T + P F Sbjct: 65 ADQIFTDVIKNTYQTRASFLSEKVESLPFDEQQRIFAVVETLISEAD 111 >gi|319957536|ref|YP_004168799.1| peptidase s24/s26a/s26b, conserved region [Nitratifractor salsuginis DSM 16511] gi|319419940|gb|ADV47050.1| Peptidase S24/S26A/S26B, conserved region [Nitratifractor salsuginis DSM 16511] Length = 237 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-RS 192 + + SM+P+ +I AI+ D L + + +++ K+L Sbjct: 145 KGPIRLMQVDGYSMVPMLYPDSWVIYEDAIEYTV-DGLYVINYSNELMVKLLQFNPEEDV 203 Query: 193 IDLMSLNCCYPVDTVEMSD---IEWIARIL 219 ++++S N Y V D + + ++L Sbjct: 204 LEIISKNPEYKSWKVRPGDQSTFQIVGKVL 233 >gi|307129603|ref|YP_003881619.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527132|gb|ADM97062.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 76 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + L+ A K GLD T + +R R P+ E ++ + + Sbjct: 11 LGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGV-----RNPTLEVLYILATGLHTD 65 Query: 69 ICQLLDLPFS 78 + L Sbjct: 66 LTTLFVFRDP 75 >gi|114798978|ref|YP_761236.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739152|gb|ABI77277.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 69 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K + + ++ E + A +AGL T + +R E + K L Sbjct: 1 MDIRQKFGKRLRQLREERGWSQEEFADRAGLHRTYVSAVERGVRNPTLSV--LERLAKAL 58 Query: 63 A 63 Sbjct: 59 D 59 >gi|322688843|ref|YP_004208577.1| hypothetical protein BLIF_0656 [Bifidobacterium longum subsp. infantis 157F] gi|320460179|dbj|BAJ70799.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 161 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 6/111 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES------IFKIL 62 I + I + E LT S A + + + ++ ++ E S + +++ Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMARLM 62 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + CQ +PF + + + + Sbjct: 63 EMPDNGFCQSCAMPFYCPEDHGTEPDGTRNGDYCNYCYEDGVFLQDYANSD 113 >gi|167038623|ref|YP_001666201.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117014|ref|YP_004187173.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857457|gb|ABY95865.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930105|gb|ADV80790.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 129 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + NLT LAR L P++ + R+P E++ KI N + Sbjct: 2 LKDRLKTLRNEKNLTQRELARLLNLSPSTIAMYETGQ-----RFPDPETLKKIADFFNVS 56 >gi|331082825|ref|ZP_08331947.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400154|gb|EGG79803.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] Length = 91 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I+ + ++H L+ A + + + + +P E I KI Sbjct: 2 NIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKS-----YPDLEMIIKISDYFKI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ +LL + ++K + Sbjct: 57 SVDELLRNDVQSEEKIDNEKKVKRDI 82 >gi|320007854|gb|ADW02704.1| transcriptional regulator, XRE family [Streptomyces flavogriseus ATCC 33331] Length = 509 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T S LA ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQSQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|327193279|gb|EGE60185.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 220 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + H L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 42 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 96 Query: 68 TICQLLDLPFSDGRTTE 84 + + + Sbjct: 97 GLAEFFAFEPERPKKAF 113 >gi|325282199|ref|YP_004254741.1| helix-turn-helix domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324314008|gb|ADY34561.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM 20712] Length = 151 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 6/71 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +AID+ L+ S L R+ G+ N+ T + K+ A + Sbjct: 10 IGQAIDKRRNELGLSKSELGRRIGVPQQHINRILERET------METSKLAKVSQALDYN 63 Query: 69 ICQLLDLPFSD 79 L Sbjct: 64 FFALFCSMSHQ 74 >gi|288560837|ref|YP_003424323.1| signal peptidase I [Methanobrevibacter ruminantium M1] gi|288543547|gb|ADC47431.1| signal peptidase I [Methanobrevibacter ruminantium M1] Length = 242 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 T+ SMLP + GD +++N + ++ G+ + + K + G S+ L+S Sbjct: 145 VIFTTEGDSMLPTIKSGDKVLVNKSHNIHVGNLVSANSSEYGPICKRVADIDGDSVYLVS 204 Query: 198 LNCC 201 N Sbjct: 205 DNKK 208 >gi|190894990|ref|YP_001985283.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700651|gb|ACE94733.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 203 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + H L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 25 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 79 Query: 68 TICQLLDLPFSDGRTTE 84 + + + Sbjct: 80 GLAEFFAFEPERPKKAF 96 >gi|94968442|ref|YP_590490.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550492|gb|ABF40416.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 179 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S +I ++I + +R L+ LA + + T +K + S E + K L Sbjct: 63 SQLQIAQSIRNLRQRAGLSQRQLALRMQVPRTYVSKIENEKATPTLS--SLERLAKALQV 120 Query: 65 T 65 T Sbjct: 121 T 121 >gi|90417214|ref|ZP_01225141.1| hypothetical protein GB2207_05804 [marine gamma proteobacterium HTCC2207] gi|90330990|gb|EAS46251.1| hypothetical protein GB2207_05804 [marine gamma proteobacterium HTCC2207] Length = 121 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 1/93 (1%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + ++ + +++ + L+R G+ + N+ + R S E + T Sbjct: 2 NNTISMRLSKLMKERDISQNALSRATGVAQPTINRIL-CEVTLNPRHDSMERLANFFDVT 60 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 ++ + E + S Sbjct: 61 PGSMYRSPSKEAFFSNEASLDELCENIERLSAS 93 >gi|331270556|ref|YP_004397048.1| putative transcriptional regulator, lacI/xre family [Clostridium botulinum BKT015925] gi|329127106|gb|AEB77051.1| Predicted transcriptional regulator, lacI/xre family [Clostridium botulinum BKT015925] Length = 221 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 58/213 (27%), Gaps = 5/213 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---WPSTESIFKILAA 64 +I I + N+T LA+K G+ + + S + Sbjct: 3 RIGSKIKEARLKSNMTEKQLAKKIGVSEKFIKEVESGKKVINESVMGKISKVLGKDLNDV 62 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 T ++ + + EK + + +P I Sbjct: 63 TMSFETEVYEEEKVQNTNKKTVEKINDVWNDALGSVLKPVPVYGYDMARIIEMRKLPIIG 122 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + G +A D + KGD+ ++ + G+ + Sbjct: 123 NRVEG-HAKDKVLFLKVEDDDMIGSRIAKGDVAFGYITHEIENNALC-LVEYKGERHIRQ 180 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + + L+S +TV + DI + R Sbjct: 181 IKRLDSNKLLLISNGNSLRTETVTVRDIRVLVR 213 >gi|322373236|ref|ZP_08047772.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321278278|gb|EFX55347.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 69 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 17/41 (41%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 ++ + + R L S LA+ AG+ S + +R Sbjct: 2 RLKNRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTP 42 >gi|32141280|ref|NP_733681.1| UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|256784482|ref|ZP_05522913.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|289768363|ref|ZP_06527741.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|24429550|emb|CAD55243.1| putative UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|289698562|gb|EFD65991.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] Length = 509 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I + T S LA ++ N+ +R S E I +I A Sbjct: 8 RIGRLIRDARQHRGWTQSQLAEALNTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|332361662|gb|EGJ39466.1| transcriptional regulator [Streptococcus sanguinis SK1056] Length = 69 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 2 KLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 56 Query: 68 T 68 Sbjct: 57 N 57 >gi|296453887|ref|YP_003661030.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] gi|296183318|gb|ADH00200.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] Length = 161 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 6/111 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES------IFKIL 62 I + I + E LT S A + + + ++ ++ E S + K++ Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAKLM 62 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + CQ +PF + + + + Sbjct: 63 EMPDNGFCQSCAMPFYRPEDHGTEPDGTRNGDYCNYCYDDGVFLQDYANSD 113 >gi|196033431|ref|ZP_03100843.1| DNA-binding protein [Bacillus cereus W] gi|229196038|ref|ZP_04322790.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|195993865|gb|EDX57821.1| DNA-binding protein [Bacillus cereus W] gi|228587420|gb|EEK45486.1| Transcriptional regulator, MerR [Bacillus cereus m1293] Length = 181 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K++K I S F + + VP + Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 ENVLEHKGEELAFVLDG 133 >gi|206970891|ref|ZP_03231843.1| DNA-binding protein [Bacillus cereus AH1134] gi|229189930|ref|ZP_04316940.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206734527|gb|EDZ51697.1| DNA-binding protein [Bacillus cereus AH1134] gi|228593604|gb|EEK51413.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 181 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K++K I S F + + VP + Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 ENVLEHKGEELAFVLDG 133 >gi|30019868|ref|NP_831499.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229043585|ref|ZP_04191294.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|229127155|ref|ZP_04256152.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|29895413|gb|AAP08700.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228656271|gb|EEL12112.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|228725807|gb|EEL77055.1| Transcriptional regulator, MerR [Bacillus cereus AH676] Length = 181 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K++K I S F + + VP + Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 ENVLEHKGEELAFVLDG 133 >gi|75763251|ref|ZP_00743006.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896766|ref|YP_002445177.1| DNA-binding protein [Bacillus cereus G9842] gi|228900413|ref|ZP_04064641.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228938947|ref|ZP_04101547.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952211|ref|ZP_04114302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958114|ref|ZP_04119849.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228969645|ref|ZP_04130433.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228971829|ref|ZP_04132450.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978437|ref|ZP_04138814.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|229069382|ref|ZP_04202672.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|229079014|ref|ZP_04211566.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|229109288|ref|ZP_04238887.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|229144444|ref|ZP_04272849.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|229178237|ref|ZP_04305608.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|296502428|ref|YP_003664128.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|74489263|gb|EAO52724.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543988|gb|ACK96382.1| DNA-binding protein [Bacillus cereus G9842] gi|228605367|gb|EEK62817.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|228639075|gb|EEK95500.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228674298|gb|EEL29543.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|228704428|gb|EEL56862.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228713869|gb|EEL65754.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228781454|gb|EEM29655.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228787919|gb|EEM35877.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228790054|gb|EEM37848.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228801631|gb|EEM48513.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807482|gb|EEM54010.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820796|gb|EEM66821.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859211|gb|EEN03643.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|296323480|gb|ADH06408.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326939449|gb|AEA15345.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 181 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K++K I S F + + VP + Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 ENVLEHKGEELAFVLDG 133 >gi|323691518|ref|ZP_08105787.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] gi|323504412|gb|EGB20205.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] Length = 136 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +T LA K G+ + +K +R + +P S+ K+ ++ QL Sbjct: 10 IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLL-----YPDVNSLPKLAGIFGISVDQL 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYF 95 + + +DG ++ + Sbjct: 65 MQIKTNDGPVNDRPVANRIIPIV 87 >gi|332654251|ref|ZP_08419995.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517337|gb|EGJ46942.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 29/86 (33%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I ++ L+ L K G+ + +K + P + ++ Sbjct: 2 ELKERIALARKQAGLSQEQLGEKLGVSRQAVSKWESGQNN-----PDVAYLAEMCRLFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 + LL ++ + + + + Sbjct: 57 SSDWLLLGKETEQASAPARCPDCQTI 82 >gi|317055082|ref|YP_004103549.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447351|gb|ADU20915.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 165 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + ++ L+ LA G+ S ++ + P I ++ Sbjct: 5 KIGAFLKQLRNEKGLSQEKLAEVFGVSSRSVSRWENGRT-----MPDISIIIELADYYGI 59 Query: 68 TICQ 71 I + Sbjct: 60 DIRE 63 >gi|256377491|ref|YP_003101151.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921794|gb|ACU37305.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 192 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 5/133 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + T + LA G+ ++ ++ + R PS E + I A Sbjct: 8 QVGERLRALRASRGATLADLAEVTGISKSTLSRLESGQ-----RRPSLELLLPIARAHRV 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P + P P + Sbjct: 63 PLDELVGAPPVGDPRVRLAPVRRNGMTVVPLTQQPGGIQAYKMLIPYRGDDPDPRTHGGY 122 Query: 128 NGIYAIQTQDTRH 140 +Y + + Sbjct: 123 EWLYVLAGRLRLV 135 >gi|119967867|ref|YP_950697.1| putative cI-like repressor [Staphylococcus phage PH15] gi|112790031|gb|ABI21751.1| putative cI-like repressor [Staphylococcus phage PH15] gi|329736005|gb|EGG72280.1| putative HTH-type transcriptional regulator AnsR [Staphylococcus epidermidis VCU045] Length = 107 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I + I ++ + +N+ + A K G++ ++ ++ + +R E I +I Sbjct: 1 MRTSAEIGKLIKQLRKENNINLTDFATKIGVNKSTLSRYENG-----SRKIPMEDIAEIA 55 Query: 63 AATNETI 69 A N T Sbjct: 56 NALNVTP 62 >gi|148545826|ref|YP_001265928.1| hypothetical protein Pput_0576 [Pseudomonas putida F1] gi|148509884|gb|ABQ76744.1| transcriptional regulator [Pseudomonas putida F1] Length = 233 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 61/231 (26%), Gaps = 28/231 (12%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR-----------NRWPSTES 57 + + + + LTPS A + + N KR R RW T Sbjct: 5 GDRLRALLQECGLTPSDFAAQRSVTAQHVNNWFKRGVPLARLDELADLFCVHRRWLRTGE 64 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K + + + + + Y+ S + Sbjct: 65 GPKHPNPLLRNGLPRPVPANPLTPLSGHRGRLLKVPYYEVSNG--------LLSPVSSKH 116 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + +P G+ A ++MLPL L ++ + + Sbjct: 117 LRLPAKALKGLGVQA--GNAICLAMPASNMLPLIPLEATLAIDLGMTQVVEGETYALLQN 174 Query: 178 GDIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222 G + L ++ L S Y V+ + +E + + S Sbjct: 175 GMLRVNNLSLGPHDTLYLHSHDRRNYTVERYTAAQRQAQGLEILGWVFHWS 225 >gi|71898886|ref|ZP_00681053.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1] gi|71731298|gb|EAO33362.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1] Length = 126 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + + R+ E L+ LA +G+ S N +G ++ P +I K Sbjct: 1 MNSLAIRAVADNVRRLLEARRLSQKELAALSGVSQKSINDLLNYGGT-VSKEPRLGTIEK 59 Query: 61 ILAATNETICQ 71 + Q Sbjct: 60 LAKGFGIATWQ 70 >gi|218507568|ref|ZP_03505446.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 167 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + H L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 4 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + + Sbjct: 59 GLAEFFAFEPERPKKAF 75 >gi|172040064|ref|YP_001799778.1| HTH family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171851368|emb|CAQ04344.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium urealyticum DSM 7109] Length = 115 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ AI+ L+ LA + GL ++ ++ + R + +I AT Sbjct: 9 EMISAIESALSSAGLSQRDLAARTGLSQSTVHRILKGE-----RNVKMPELIRIADATGC 63 Query: 68 TICQ 71 T+ Q Sbjct: 64 TVAQ 67 >gi|119505191|ref|ZP_01627266.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] gi|119458882|gb|EAW39982.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] Length = 70 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 HK + ++++ + T L+ AG+ S N + PST KI Sbjct: 5 HKNLLNNLEQLRKAAGFTQQQLSDSAGVSRKSINAIENGIYV-----PSTVLALKISQTL 59 Query: 66 NETICQLLD 74 T+ L Sbjct: 60 KCTVDDLFQ 68 >gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 107 Score = 49.0 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 3 SFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + ++ + I + +R +T LA G+D ++ + +PS + + KI Sbjct: 1 MRTANELLGLRIRELRKRAGMTQEQLAELLGIDQKHMSRIELGKS-----YPSLDRLLKI 55 Query: 62 L 62 Sbjct: 56 A 56 >gi|333009490|gb|EGK28944.1| repressor protein C2 domain protein [Shigella flexneri VA-6] Length = 77 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 156 ILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIE 213 ++ ++ + GD ++ TG+ K LI + L +LN +P ++++ + Sbjct: 1 MIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCS 59 Query: 214 WIARIL 219 I ++ Sbjct: 60 IIGTVI 65 >gi|301053367|ref|YP_003791578.1| MerR family transcriptional regulator [Bacillus anthracis CI] gi|300375536|gb|ADK04440.1| transcriptional regulator, MerR family [Bacillus cereus biovar anthracis str. CI] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|291548676|emb|CBL24938.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 129 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 3/79 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + ++ LA K G TS NK + E R + I L T Sbjct: 3 IGERIKARRDELGMSQEELAHKIGYKSKTSINKIELGIQE--LRQSKIKQIADALQTTPA 60 Query: 68 TICQLLDLPFSDGRTTEKK 86 I + ++ Sbjct: 61 YIMGWKETEEDQQLKKCRE 79 >gi|228907521|ref|ZP_04071378.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228852013|gb|EEM96810.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|228914405|ref|ZP_04078019.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845250|gb|EEM90287.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|228933114|ref|ZP_04095975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826555|gb|EEM72328.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|229155408|ref|ZP_04283518.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] gi|228628123|gb|EEK84840.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|196044996|ref|ZP_03112229.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225863689|ref|YP_002749067.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184021|ref|ZP_04311235.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|196023998|gb|EDX62672.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225789365|gb|ACO29582.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228599460|gb|EEK57066.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|218902948|ref|YP_002450782.1| DNA-binding protein [Bacillus cereus AH820] gi|228926864|ref|ZP_04089931.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121381|ref|ZP_04250611.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|218538383|gb|ACK90781.1| DNA-binding protein [Bacillus cereus AH820] gi|228662070|gb|EEL17680.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|228832805|gb|EEM78375.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|164605267|dbj|BAF98445.1| putative phage repressor [Sphingopyxis macrogoltabida] Length = 182 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 4/102 (3%) Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKV 184 + +M P + GD +I+ + D L + + + Sbjct: 79 WLRRLCNRPAGLAILPIAGEAMQPTLQNGDEVIIQRLRSHDALQDGLYAVRGSSETFVRR 138 Query: 185 LISRR-GRSIDLMSLNCCYPVDT-VEMSDIEWIARILWA-SQ 223 + I +++ + YP V+ I + R++W SQ Sbjct: 139 IALDPTKNRISVLTDHPAYPSWNGVQRKAINVVGRVIWIGSQ 180 >gi|49477369|ref|YP_035961.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328925|gb|AAT59571.1| transcriptional regulator, MerR family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|52143637|ref|YP_083193.1| MerR family transcriptional regulator [Bacillus cereus E33L] gi|196039098|ref|ZP_03106405.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|51977106|gb|AAU18656.1| transcriptional regulator, MerR family [Bacillus cereus E33L] gi|196030243|gb|EDX68843.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|42780924|ref|NP_978171.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206974833|ref|ZP_03235748.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217959313|ref|YP_002337861.1| DNA-binding protein [Bacillus cereus AH187] gi|222095451|ref|YP_002529511.1| DNA-binding protein [Bacillus cereus Q1] gi|229090798|ref|ZP_04222029.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|229138526|ref|ZP_04267113.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|42736845|gb|AAS40779.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206746852|gb|EDZ58244.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066610|gb|ACJ80860.1| DNA-binding protein [Bacillus cereus AH187] gi|221239509|gb|ACM12219.1| DNA-binding protein [Bacillus cereus Q1] gi|228644934|gb|EEL01179.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|228692549|gb|EEL46277.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|324325844|gb|ADY21104.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|83594740|ref|YP_428492.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577654|gb|ABC24205.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 97 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ A+ R L+ + LA + G ++ + + G WPS ++ ++ AAT Sbjct: 29 ELATALIAARARAGLSQAELAERMGTTQSAIARLE-----GGRHWPSRRTLERLAAATG 82 >gi|325830940|ref|ZP_08164293.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1] gi|325487102|gb|EGC89547.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1] Length = 77 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + L+ G A + G+ PT +R R S +++ +I T + Sbjct: 17 RIKDLRDERGLSQRGFAARIGMSPTYLADVERGA-----RNVSIDNMKRIADGFGVTFHE 71 Query: 72 LLDLPF 77 + + Sbjct: 72 MTEGME 77 >gi|86158311|ref|YP_465096.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774822|gb|ABC81659.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 136 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + A+ M E LT + LA G S + ++ + RW E++ KI A + Sbjct: 45 DVAIAVRSMRENAGLTQAQLAEIVGTSQPSIARMEKGLDQRTPRW---ETLHKIARALGK 101 Query: 68 T 68 Sbjct: 102 N 102 >gi|84496251|ref|ZP_00995105.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp. HTCC2649] gi|84383019|gb|EAP98900.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp. HTCC2649] Length = 511 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I LT + LA K G ++ + ++ S E + ++ Sbjct: 9 RIGTLIRDARRHQGLTQNELADKLGTSQSAVARIEQGRQN-----LSLEMLARVGETLGS 63 Query: 68 TI 69 Sbjct: 64 EF 65 >gi|99082024|ref|YP_614178.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038304|gb|ABF64916.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 289 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 4/113 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + ++R L+ S LAR G+D ++ ++ + R P+ I A Sbjct: 13 QFRDRLERALRDSGLSQSALARATGVDRSTISQLL---TDDGARLPNAHVIGACAEALGV 69 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119 + LL L E I + P + G K V Sbjct: 70 SADWLLSLSERPESAAELLASSIAMTEAPRALVDERIYEWHREAAGYKIRHVP 122 >gi|291521725|emb|CBK80018.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 129 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ L+ LA A L + + R PS ES+ KI A T Sbjct: 8 IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENA-----KRKPSLESLIKISNALEIT 62 Query: 69 ICQLLDLPFSDGRTTE 84 I +LL T Sbjct: 63 IDELLYGNLLYNPTEY 78 >gi|148266749|ref|YP_001245692.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392790|ref|YP_001315465.1| hypothetical protein SaurJH1_0316 [Staphylococcus aureus subsp. aureus JH1] gi|258419674|ref|ZP_05682641.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258448642|ref|ZP_05696755.1| transcriptional regulator [Staphylococcus aureus A6224] gi|269203649|ref|YP_003282918.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282925315|ref|ZP_06332972.1| XRE family transcriptional regulator [Staphylococcus aureus A9765] gi|283771021|ref|ZP_06343912.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|284024165|ref|ZP_06378563.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|295407180|ref|ZP_06816981.1| XRE family transcriptional regulator [Staphylococcus aureus A8819] gi|297245933|ref|ZP_06929792.1| XRE family transcriptional regulator [Staphylococcus aureus A8796] gi|147739818|gb|ABQ48116.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149945242|gb|ABR51178.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257844259|gb|EEV68641.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257858273|gb|EEV81161.1| transcriptional regulator [Staphylococcus aureus A6224] gi|262075939|gb|ACY11912.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282592591|gb|EFB97601.1| XRE family transcriptional regulator [Staphylococcus aureus A9765] gi|283459615|gb|EFC06706.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|294968033|gb|EFG44061.1| XRE family transcriptional regulator [Staphylococcus aureus A8819] gi|297177097|gb|EFH36351.1| XRE family transcriptional regulator [Staphylococcus aureus A8796] gi|315130281|gb|EFT86268.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus CGS03] Length = 107 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 5/87 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I + I ++ + +N+ + A K G++ ++ ++ + +R E I +I Sbjct: 1 MRTSAEIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENG-----SRKIPMEDIAEIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89 A T LL + + Sbjct: 56 NALKVTPEYLLLKNRQTENEVQHRAAH 82 >gi|53721509|ref|YP_110494.1| MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126443308|ref|YP_001061732.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 668] gi|126457392|ref|YP_001074677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1106a] gi|134282910|ref|ZP_01769612.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 305] gi|167921777|ref|ZP_02508868.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei BCC215] gi|226196538|ref|ZP_03792119.1| transcriptional regulator PuuR [Burkholderia pseudomallei Pakistan 9] gi|237509401|ref|ZP_04522116.1| transcriptional regulator PuuR [Burkholderia pseudomallei MSHR346] gi|242312333|ref|ZP_04811350.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b] gi|254198938|ref|ZP_04905356.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei S13] gi|254265312|ref|ZP_04956177.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710a] gi|254296722|ref|ZP_04964176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 406e] gi|52211923|emb|CAH37928.1| putative MerR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126222799|gb|ABN86304.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 668] gi|126231160|gb|ABN94573.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106a] gi|134245558|gb|EBA45650.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 305] gi|157806591|gb|EDO83761.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 406e] gi|169657110|gb|EDS88504.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei S13] gi|225931414|gb|EEH27420.1| transcriptional regulator PuuR [Burkholderia pseudomallei Pakistan 9] gi|235001606|gb|EEP51030.1| transcriptional regulator PuuR [Burkholderia pseudomallei MSHR346] gi|242135572|gb|EES21975.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b] gi|254216314|gb|EET05699.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710a] Length = 183 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + ++ L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 3 NEVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIP 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ + + R+ + E+P L Sbjct: 58 MSLAEFFTFEIDENRSVVSRRGEMPNL 84 >gi|82702660|ref|YP_412226.1| XRE family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82410725|gb|ABB74834.1| transcriptional regulator, XRE family [Nitrosospira multiformis ATCC 25196] Length = 189 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 5/87 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E+ L S LA G+ P + + + + P + + KI Sbjct: 7 DIARIIREGREKLKLNQSELAELVGVSPQAVQQWESGATQ-----PRGKRLNKIAEVLKL 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLY 94 + + Sbjct: 62 PPAMMHFGMSLEVPAAPDAAVSRQPEN 88 >gi|76817873|ref|YP_337176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710b] gi|217424647|ref|ZP_03456145.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576] gi|254185399|ref|ZP_04891987.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1655] gi|254187284|ref|ZP_04893798.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei Pasteur 52237] gi|76582346|gb|ABA51820.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710b] gi|157934966|gb|EDO90636.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei Pasteur 52237] gi|184209634|gb|EDU06677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1655] gi|217392571|gb|EEC32595.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576] Length = 189 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + ++ L+ LA++AG+ + + ++ + PS S+ K+L Sbjct: 9 NEVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIP 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ + + R+ + E+P L Sbjct: 64 MSLAEFFTFEIDENRSVVSRRGEMPNL 90 >gi|295100273|emb|CBK97818.1| Predicted transcriptional regulator with C-terminal CBS domains [Faecalibacterium prausnitzii L2-6] Length = 184 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 6/112 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + E ++ LA K G +S NK + R + I I A Sbjct: 3 IGQRVKIRREELGMSQEELATKVGYKSKSSINKIELGF-----RVLTQSKIKVIADALET 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 T ++ + + ++ + + + Sbjct: 58 TPSYIMGWDEESHQNEWSSKFRDSVMQILNNADPADLKAAGISVQEIEEELD 109 >gi|167767646|ref|ZP_02439699.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|167710663|gb|EDS21242.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|291560781|emb|CBL39581.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 204 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 6/148 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + + ++ LA K G+ + +K + P E I + T Sbjct: 5 DRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQST-----PDLEKIIIMSDFFGVTTD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 +L +K ++ + + S + GN + + + Sbjct: 60 YILKGIEPVADKEQKNKELTSKVLYISSTAFVAIGLFC-AFGNWYAEQTMEAVWGSMIIQ 118 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILI 158 + P Y +I Sbjct: 119 AIGIVGYFIARILSEEKSPFYVNWLNII 146 >gi|83589108|ref|YP_429117.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572022|gb|ABC18574.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 115 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E++ + +R L +AR G++ + +R + P E++ ++ Sbjct: 3 RFGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQ-----PGLETLVRLSRLFGV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 ++ +L+ + + + Sbjct: 58 SLDELVGVERAATPLPLASYRS 79 >gi|326563163|gb|EGE13432.1| putative prophage repressor [Moraxella catarrhalis 103P14B1] gi|326568826|gb|EGE18896.1| putative prophage repressor [Moraxella catarrhalis BC8] Length = 191 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 58/214 (27%), Gaps = 46/214 (21%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ PS +A + + K K+ S +++ ++ Sbjct: 6 ERLQFAIKQAGSNPSKVAEAVNVTAQATQKWKKG-------QISVDTLTNVIKEIGVDAN 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 LL ++ + + + S + G+ W Sbjct: 59 WLLLGEQANQNQV---NNQHGYIGGSVNQSVVNNYASQLTGGDDW--------------- 100 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 + M P + GD + ++ + G+ + + K+L R Sbjct: 101 ---------LTIINNDMFPAFAIGDCVRIDVKQEAQAGNYVYVDCEGK----KMLRKYRP 147 Query: 191 RSI--------DLMSLNCCYPVDTVEMSDIEWIA 216 + L++ N YPV + Sbjct: 148 KGYDENGTPYTHLVAENEDYPVIDSRHQAFTVLG 181 >gi|326201089|ref|ZP_08190961.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988657|gb|EGD49481.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 230 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 63/229 (27%), Gaps = 24/229 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I+++ + TP LA+ G+ + + I K L Sbjct: 3 RIGQEINKVRLKKGKTPKQLAKALGVSESFVLDIESGKKIVS--DDMIGRISKALDFELG 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIR 124 I T K + + GN TV + Sbjct: 61 PIGLFASDDKFAPSTGNKDSVRPVKKVASVATNEPVQQVWDDAFGNILKTVPVYGYKMDK 120 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI--LILNSAIQVN-------CGDRLLIKP 175 + I+ ++ D+ + + D + + Sbjct: 121 IIDKKLLPIEKNKVEGYAKEKVFYLNIEDTDMAGFRIFKGDRAFGVLENQIDKDGIFLIE 180 Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP-----VDTVEMSDIEWIARIL 219 G+ + + +G + L+ Y +TV +I+ +AR++ Sbjct: 181 YNGERAVRQVKKLQGDKLLLV-----YNRGTLITETVSTKEIKIVARLV 224 >gi|261369061|ref|ZP_05981944.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568797|gb|EFB74332.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 90 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 5/78 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + E + +A+ G +S N+ + PS E + + Sbjct: 3 EVGKRLKALRESIGFSQVKMAQALGTTQSSINRYENGQS-----SPSVELFRRYADYFDV 57 Query: 68 TICQLLDLPFSDGRTTEK 85 ++ + T Sbjct: 58 SLDYIFARTDKPQGETYH 75 >gi|262280440|ref|ZP_06058224.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262258218|gb|EEY76952.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 182 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 73/192 (38%), Gaps = 17/192 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + ++R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 6 EIIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L++ P + + + + + + + P Sbjct: 61 IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPSE-DR 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + + + +++ +++ A++++ GD I + Sbjct: 120 LSEPHPVGSVEHIIVVEGKALVG--------LIDEAVELSVGD--YICYPADQKHIFRAL 169 Query: 187 SRRGRSIDLMSL 198 + +++ L+S Sbjct: 170 EKGTKAL-LISE 180 >gi|169832243|ref|YP_001718225.1| helix-turn-helix domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169639087|gb|ACA60593.1| helix-turn-helix domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 95 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + E T S LA K + + ++ ++ R+P E++ ++ ++ Sbjct: 4 DRLRKAREARGWTQSQLAAKLNVSDATISRYEKG-----LRYPDIETLKRLALVLETSVD 58 Query: 71 QLLDLPFSDGRTTEKKEKEI 90 L+ D E Sbjct: 59 YLVGEKPDDPDEKLPPEARR 78 >gi|315037973|ref|YP_004031541.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|312276106|gb|ADQ58746.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] Length = 147 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/100 (12%), Positives = 25/100 (25%), Gaps = 5/100 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I ++ +T + LA G+ + R P E+ K+ ++ Sbjct: 1 MNRIRQVRSEKGITQAELANAIGMSRQGLAYYENNQ-----REPKLETWQKLADYLGVSV 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 L S + F + + Sbjct: 56 PYLQGFSDSLANGASRNSNGFGFFNFSEEANEAKINDQSL 95 >gi|306825347|ref|ZP_07458687.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432285|gb|EFM35261.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 158 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 6/135 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + HNLT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGENIKALRKTHNLTQPEFAKIVGISRNSLSRYENGIS-----SVSTELIDRICKKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + E + + + G+ F + Sbjct: 57 YID-IVGEEKMLTPVEDYQLTLKIEVIKERGANILAQLYRFQDEQGIAFDDTSNPWVLMS 115 Query: 129 GIYAIQTQDTRHKTQ 143 + + Sbjct: 116 DDLSDLINTRIYLVS 130 >gi|239982240|ref|ZP_04704764.1| putative signal peptidase [Streptomyces albus J1074] Length = 132 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLM 196 + SM+P GD L++ +V GD ++++ +V K + RR ++ Sbjct: 1 MVEVDGPSMVPTLEHGDWLLVRYGARVRPGDVVVLRHPFQQDLLVVKRAVERREGGWWVL 60 Query: 197 SLN 199 N Sbjct: 61 GDN 63 >gi|228969784|ref|ZP_04130548.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228789936|gb|EEM37754.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 90 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + ++ LT LA + L +R R S ++ KI + Sbjct: 2 VGENIRILRKKRGLTQEELAERINLQQAYIGGIERGE-----RNISMLTLQKIAVGLEIS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ + + ++E+ + ++ Sbjct: 57 PDKIFNFSNINSLENPQQEEFLSII 81 >gi|146296435|ref|YP_001180206.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410011|gb|ABP67015.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 103 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + ++ + LA +AG+ ++ + +R + P+ E++ I A N Sbjct: 2 EVGKKIKELRKQKKWSQEKLAAEAGISQSALSAIERGIKQ-----PTVETLNNICNALNI 56 Query: 68 TICQLLDLPFSDGRTT 83 T+ ++ Sbjct: 57 TLVDFFSEEKTELSPA 72 >gi|186685408|ref|YP_001868604.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467860|gb|ACC83661.1| putative transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 87 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ +A+ R +L+ LA +A L T + +R + PS E++ K+ A N Sbjct: 11 QRFGKAVRRRRRELDLSQEQLAERAELHRTYISNLERGELN-----PSLETMEKLANALN 65 Query: 67 ETICQLLDLPFSDGRTTEKK 86 +I + +K Sbjct: 66 ISIPAMFINYGIQVENEPRK 85 >gi|322385844|ref|ZP_08059487.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270129|gb|EFX53046.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 68 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + R L + LA+KAG+ + + +R PS KI NE Sbjct: 2 KLKNRLKELRARDGLNQTDLAKKAGVSRQTISLLERDEYT-----PSVVIALKIAQIFNE 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|312794293|ref|YP_004027216.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181433|gb|ADQ41603.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 68 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + + L+ A+ AGL + ++ + PS I KI A Sbjct: 4 GRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKT----NPSLSVIKKISKAL 55 >gi|311279673|ref|YP_003941904.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748868|gb|ADO48620.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 191 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 14/148 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + +I I E + + S LA +AG+ T +K +R P+ + ++ A Sbjct: 9 NARIGARIRIERESRSWSLSELADRAGVSRTMIHKIERGDS-----SPTATMLGRLSGAF 63 Query: 66 NETICQLLDLPFSDG--------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 ++ L+ + + + L S D + Sbjct: 64 GISMSTLIARAEMQEGKLLRFASQPVWRDPQSHYLRRHVSPRSDLPIDLVQVELPPGSD- 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + +P Q + Sbjct: 123 IPMPASSYALARQLIWLQQGELLFIEGD 150 >gi|260585081|ref|ZP_05852823.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] gi|260157277|gb|EEW92351.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] Length = 180 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + LT LA + L ++ + PS ++ F IL Sbjct: 2 EIGSHLKALRVQKGLTQEELAERTDLSKGYISQLENDLS-----SPSMDTFFDILEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 + + T E + Sbjct: 57 APKDFFEDGPEEALTVYGPEDMTVME 82 >gi|225377956|ref|ZP_03755177.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] gi|225210207|gb|EEG92561.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] Length = 339 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 49/190 (25%), Gaps = 22/190 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I I + ++ +A K G+ + +K + G P + I + Sbjct: 2 KTIGNKIKELRRSKGMSQKDIADKLGVTSQAVSKWENDGS-----LPEMTMLPDIASLFG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I L + + +K+ + + + N Sbjct: 57 IQIDDLFEYSTEKRYESIEKKLQYGRVMTNMEFENEEAFLIREVEADPTNY--------- 107 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 ++ H+ + +Y + L+ + GD I K Sbjct: 108 --HAISLLGDFYGHRAECMYQKSVYYAKRAIDLHPNQK---GD---INNINNGNHGKRFD 159 Query: 187 SRRGRSIDLM 196 +L+ Sbjct: 160 WDTANHQELI 169 >gi|257066745|ref|YP_003153001.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798625|gb|ACV29280.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 491 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 52/181 (28%), Gaps = 18/181 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S +K+ + + + +T LA G++ ++ + PS + + Sbjct: 1 MKKLSIEKLADTVINKRKEKGITQKSLADTTGINRAMISRLESCDYT-----PSIDQLQA 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + + + + + K+ +I + G + V Sbjct: 56 IGEVLDFEVVDMFEEETYEKEIKSDKKYKIAVAGTGYVGMSIATLLSQHNEVTAVDIVEE 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRT 177 + + QD + + D+ + ++ D ++I T Sbjct: 116 KVEKI----------NNKISPIQDDYIEKYLEEKDLNLRATIDGEAAYKDADFVVIAAPT 165 Query: 178 G 178 Sbjct: 166 N 166 >gi|209546895|ref|YP_002278813.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538139|gb|ACI58073.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 182 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + H L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 4 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 59 GLAEFFAFEPERPRKAF 75 >gi|163738607|ref|ZP_02146021.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|161387935|gb|EDQ12290.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 286 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 4/132 (3%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ ++R L+ S LAR G+D ++ ++ + R P+ + Sbjct: 7 KRLRAEQFRLRLNRALRDSGLSQSALARAIGVDRSTISQLL---TDAGARLPNAHVVGAC 63 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 A + LL L + + + P + + VP Sbjct: 64 AGALGVSADWLLSLSDRPENAADLVAASLSMAKAPRALVDERIFEWHQEA-QGYKIRHVP 122 Query: 122 EIRSPHNGIYAI 133 A+ Sbjct: 123 AALPDMLKTRAL 134 >gi|163743006|ref|ZP_02150389.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161383689|gb|EDQ08075.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 287 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 4/132 (3%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ ++R L+ S LAR G+D ++ ++ + R P+ + Sbjct: 7 KRLRAEQFRLRLNRALRDSGLSQSALARAIGVDRSTISQLL---TDAGARLPNAHVVGAC 63 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 A + LL L + + + P + + VP Sbjct: 64 AGALGVSADWLLSLSDRPENAADLVAASLSMAKAPRALVDERIFEWHQEA-QGYKIRHVP 122 Query: 122 EIRSPHNGIYAI 133 A+ Sbjct: 123 AALPDMLKTRAL 134 >gi|157692960|ref|YP_001487422.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032] gi|157681718|gb|ABV62862.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032] Length = 111 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 4/107 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + S LA KAG+ + + +R PS + + K+ A + + Sbjct: 2 IGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + LL + + L+ + F W Sbjct: 58 VHTLLHEKDETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQIW 104 >gi|15616111|ref|NP_244416.1| immunity repressor protein (phage-related protein) [Bacillus halodurans C-125] gi|10176173|dbj|BAB07268.1| immunity repressor protein (phage-related protein) [Bacillus halodurans C-125] Length = 154 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 4/109 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ I + ++ T + LA +G+ ++ + P E+I K+ A Sbjct: 4 KQFGSFIRALRKKKGFTVNQLALYSGVSSAQISRIENGLRG----VPKPETIKKLSEALG 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L+ T+ + TGN + Sbjct: 60 HPYEDLMQAAGYIDDNTKTDLPALTERDERDIQKELEKIIKGLKTGNGF 108 >gi|311031854|ref|ZP_07709944.1| transcriptional regulator SinR [Bacillus sp. m3-13] Length = 110 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + E+ ++ S LA +AG+ + + +R PS + + K+ + Sbjct: 2 IGERIKKYREQRKMSMSELAERAGVAKSYLSSIERNLQS----NPSVQFLEKVSSVLGVN 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + LL + L+ Sbjct: 58 VNTLLHDEDEAQAKENLDREWATLVKEAMDSG 89 >gi|302869035|ref|YP_003837672.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504494|ref|YP_004083381.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302571894|gb|ADL48096.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315411113|gb|ADU09230.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 186 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 I A+ R ER L+ + LAR+AG+ ++ ++ + PS E+++ + Sbjct: 12 IAAALRRERERAGLSLTELARRAGIAKSTLSQLESGSGN-----PSVETLWAL 59 >gi|229160788|ref|ZP_04288779.1| Transcriptional regulator, MerR [Bacillus cereus R309803] gi|228622636|gb|EEK79471.1| Transcriptional regulator, MerR [Bacillus cereus R309803] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LAR A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|30261830|ref|NP_844207.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527071|ref|YP_018420.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184664|ref|YP_027916.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|165869280|ref|ZP_02213939.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633298|ref|ZP_02391623.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638844|ref|ZP_02397119.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686265|ref|ZP_02877487.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707323|ref|ZP_02897778.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650592|ref|ZP_02933559.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566460|ref|ZP_03019378.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815396|ref|YP_002815405.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604640|ref|YP_002866215.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683329|ref|ZP_05147190.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723912|ref|ZP_05185698.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734684|ref|ZP_05192396.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741092|ref|ZP_05198780.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755336|ref|ZP_05207370.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759873|ref|ZP_05211897.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256058|gb|AAP25693.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502219|gb|AAT30895.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178591|gb|AAT53967.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714720|gb|EDR20238.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513308|gb|EDR88679.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531336|gb|EDR94014.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127822|gb|EDS96694.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669962|gb|EDT20703.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083736|gb|EDT68796.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562595|gb|EDV16562.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006572|gb|ACP16315.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269048|gb|ACQ50685.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEQQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|16764949|ref|NP_460564.1| repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992775|ref|ZP_02573871.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16420129|gb|AAL20523.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329040|gb|EDZ15804.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246798|emb|CBG24612.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993529|gb|ACY88414.1| putative repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158133|emb|CBW17630.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912593|dbj|BAJ36567.1| putative repressor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224229|gb|EFX49292.1| Transcriptional regulator yidN, Cro/CI family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129874|gb|ADX17304.1| putative repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988492|gb|AEF07475.1| putative repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 178 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I N + P ++ T +++ ++ Sbjct: 55 IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVI 87 >gi|330896289|gb|EGH28384.1| peptidase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 78 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 152 RKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 +G ++++++ V G ++ P + + K L+ G L LN Y + Sbjct: 6 PEGMMILVDTEADVQPGKLVIAKLPASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA- 63 Query: 211 DIEWIA 216 D I Sbjct: 64 DCRIIG 69 >gi|323702211|ref|ZP_08113878.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532898|gb|EGB22770.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 255 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 8/89 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E + LT + LA AG+ + ++ ++ PS +++ K+ + C Sbjct: 143 LKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQ-----PSLKTLEKLSEVMGVSPCYF 197 Query: 73 LDLP---FSDGRTTEKKEKEIPLLYFPPS 98 + P + +E+ + + Sbjct: 198 IMEPGAVDQMVSLMNPELRELLIHPNVQA 226 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + E T LAR+A L + ++ +R ++ PS ++I K+ AA N Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERG-----SKRPSLKTIDKLAAALN 56 Score = 41.7 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + +N++ LA K G+ + ++ +R + +P+ ++ ++ Sbjct: 74 LGEKIRIIRTENNMSLQELADKIGISLSYLSEIERGTV-----YPALNTLKRVAEGLGVP 128 Query: 69 ICQLLDLPF 77 L+ Sbjct: 129 ATALMGHEG 137 >gi|307324662|ref|ZP_07603868.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889544|gb|EFN20524.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 403 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 4/67 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 H EAI T LA G ++ ++ +R R+ + + + Sbjct: 6 QHSSAGEAISAARRARGWTQQQLADICGYSQSTISRLERGRQSARD----VDVLALVADR 61 Query: 65 TNETICQ 71 Sbjct: 62 LGMDPSD 68 >gi|255019083|ref|ZP_05291209.1| transcription regulator, putative [Listeria monocytogenes FSL F2-515] Length = 81 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 5/83 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90 T D + ++ ++ + Sbjct: 57 TPKDFFDEEEHNQKSNLRRTRAY 79 >gi|254390107|ref|ZP_05005328.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326441822|ref|ZP_08216556.1| helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|197703815|gb|EDY49627.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 420 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 ++I + I R L+ LA KAGL ++ K+++ R + T Sbjct: 3 QEIGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHT 51 >gi|295835925|ref|ZP_06822858.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] gi|197698390|gb|EDY45323.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] Length = 509 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + + + LA ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|160916303|ref|ZP_02078510.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] gi|158432027|gb|EDP10316.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] Length = 258 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ + L+ LA + G + +K + +P TE + ++ + Sbjct: 3 LGEKIFKLRKEKGLSQEALAEQVGTTRQAISKWENDQG-----FPETEKLLRLSNIFEVS 57 >gi|39996520|ref|NP_952471.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39983401|gb|AAR34794.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|307634843|gb|ADI84259.2| helix-turn-helix DNA-binding protein, putative [Geobacter sulfurreducens KN400] Length = 142 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 7/61 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKA--GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I A+ R+ LT LA GLD T K +R + PS + + I A Sbjct: 4 NIGHALKRLRSERGLTQKDLAALVSGGLDYTYIGKIERGE-----QLPSLKILIGISEAL 58 Query: 66 N 66 Sbjct: 59 G 59 >gi|134298768|ref|YP_001112264.1| helix-turn-helix domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051468|gb|ABO49439.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1] Length = 255 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 8/89 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E + LT + LA AG+ + ++ ++ PS +++ K+ + C Sbjct: 143 LKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQ-----PSLKTLEKLSEVMGVSPCYF 197 Query: 73 LDLP---FSDGRTTEKKEKEIPLLYFPPS 98 + P + +E+ + + Sbjct: 198 IMEPGAVDQMVSLMNPELRELLIHPNVQA 226 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + E T LAR+A L + ++ +R ++ PS ++I K+ AA N + Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERG-----SKRPSLKTIDKLAAALNVSK 59 Query: 70 CQ 71 Q Sbjct: 60 TQ 61 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + L+ LA K G+ + ++ +R + +P+ ++ ++ Sbjct: 74 LGEKIRIIRNETGLSLQELADKIGISLSYLSEIERGTV-----YPALNTLKRVAEGLGVP 128 Query: 69 ICQLLDLPF 77 L+ Sbjct: 129 ATALMGHEG 137 >gi|296277306|ref|ZP_06859813.1| phage repressor [Staphylococcus aureus subsp. aureus MR1] Length = 107 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 5/87 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I + I ++ + +N+ + A K G++ ++ ++ + +R E I +I Sbjct: 1 MRTSAEIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENG-----SRKIPMEDIAEIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89 A T LL + + Sbjct: 56 NALKVTPEYLLLKNRQPENEVQHRAAH 82 >gi|218677789|ref|ZP_03525686.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 182 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + H L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 4 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 59 GLAEFFAFEPERPRKAF 75 >gi|218463407|ref|ZP_03503498.1| MerR family transcriptional regulator [Rhizobium etli Kim 5] gi|218663344|ref|ZP_03519274.1| MerR family transcriptional regulator [Rhizobium etli IE4771] Length = 182 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + H L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 4 DIGSRLRHLRLAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + + Sbjct: 59 GLAEFFAFEPERPKKAF 75 >gi|220916216|ref|YP_002491520.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954070|gb|ACL64454.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 410 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S +K+ E I + NLT + LA K G+ T+ ++ R PS + K+ Sbjct: 1 MISSQKLGERIAFARKNANLTQADLAAKIGVARTTLVAVEKGE-----RRPSNAELIKLA 55 Query: 63 AATNETICQ 71 ++ Sbjct: 56 GFLKVSVHD 64 >gi|330819769|ref|YP_004348631.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] gi|327371764|gb|AEA63119.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] Length = 189 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 19/164 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I E + + LA +G+ +K +R P+ S+ K+ A N Sbjct: 11 RIGARIRAERESRGWSLTNLAENSGVSRAMIHKIERGES-----SPTATSLAKLAGAFNL 65 Query: 68 TIC--------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNT 117 ++ + L D + + + S P G Sbjct: 66 SMSALLALAELEDGRLLRVDDQPVWIDPQSGYVRRHVSPKSVSPLTLVEIDLPPGAG--- 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161 + +P + T + + GD L + Sbjct: 123 IPMPASAYLNMRQLIWVLDGTLVFVEG-GERHELQAGDCLEIGP 165 >gi|325453311|gb|ADZ13614.1| putative phage repressor [Cronobacter phage ENT39118] Length = 128 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 7/112 (6%) Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQVNCGDRLLI 173 + P + T+ SM P +++ + + + Sbjct: 8 EDNQKTPTDLVGNCEYSNFGTKVQHCVMNGDSMHPTIAPCEVVAFIACGGRAMTPGIYVY 67 Query: 174 KPRTGDIV---AKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219 K + G S+ +S N Y T+ + D++ +++ Sbjct: 68 SRDVFGRTCMFIKRIEPLPGGSLRFISDNHFYKTFTLGIEEQNDLKIHGKVM 119 >gi|317403875|gb|EFV84348.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 201 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 46/151 (30%), Gaps = 18/151 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + + + + LA +AG+ + ++ + + P+ + K+ A Sbjct: 24 QRLADRLKTLRVERGWSLDELAGRAGVSRATLSRLENAEV-----SPTASVLGKLCGAYG 78 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLY-----------FPPSGSGGFFDSGVFPTGNKW 115 T+ +L+ + D + + P G + P Sbjct: 79 MTMSRLMRMVEDDFTPLVPSAAQALWVDGGTGFRRRSVSPPSQKLAGEVLACELPAATHI 138 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 P H+ + ++ + + S Sbjct: 139 AYEHSPRAGLEHHLV-MLEGEL-SVRVDGQS 167 >gi|225575392|ref|ZP_03784002.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM 10507] gi|225037337|gb|EEG47583.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM 10507] Length = 167 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 8/116 (6%), Positives = 29/116 (25%), Gaps = 5/116 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + E + + ++ + LA + + + + + PS + Sbjct: 1 MRKGTKGMLGEKLMTLRKKSGYSQQELADRLKVSRQTISNWELNQG-----APSIGKAKE 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ L+ +++ L + Sbjct: 56 LADIYKISLDDLVGDEVEVVARKKREPDLHVLKKLVGKMVKLECSDIDLALEEGND 111 >gi|169351319|ref|ZP_02868257.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] gi|169291541|gb|EDS73674.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] Length = 212 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH + I + + + LA K G++ S +K +R +P+ E++ KI+ Sbjct: 7 KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87 + T +LL + +EK+ Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84 >gi|51247031|ref|YP_066914.1| related to transcription regulator proteins [Desulfotalea psychrophila LSv54] gi|50878068|emb|CAG37924.1| related to transcription regulator proteins [Desulfotalea psychrophila LSv54] Length = 85 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 M S K+I +A+ ++ L+ S L ++ GLD + + R Sbjct: 6 MLLVSTKEIGDALRHKRKQMGLSQSELGKRVGLDQKKVSLMENGNPNTR 54 >gi|266623939|ref|ZP_06116874.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288864240|gb|EFC96538.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 147 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 1/78 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + E+ +T + LA K G + K + + + + K L T Sbjct: 2 NIGERIRGLREKQEMTQTELAEKIGSTKQTVYKYENGVVTNIP-YDKLILLAKALGTTPS 60 Query: 68 TICQLLDLPFSDGRTTEK 85 ++ + + + Sbjct: 61 SLMGWDKIEEAINEEFTR 78 >gi|210623634|ref|ZP_03293960.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] gi|210153504|gb|EEA84510.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 18/147 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +I + I R+ LT LA + L ++ + PS ++ Sbjct: 1 MKM----EIGKKIKRLRIEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLID 51 Query: 61 ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 IL + + + D TE +E + + P+ + + Sbjct: 52 ILEILGTNLKEFFNDTESEKIVFVKDDMFETEDEELKYEFKWLVPNSQKNEMEPVIVTIQ 111 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTR 139 + Y + Sbjct: 112 PGGQYKE-EKPHEGEEFGYVLAGSVFL 137 >gi|187921899|ref|YP_001893488.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] gi|187720337|gb|ACD21559.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 79 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +A+ + R ++ LA +A LD + + +R R P+ E++ + A N +I Sbjct: 10 GKALRSLRARRGMSQYSLANEANLDRSYISLLERGH-----RSPTLETMCSLAQALNVSI 64 Query: 70 CQLLDLPFSD 79 +++ + S Sbjct: 65 GEMIFVVESF 74 >gi|302522509|ref|ZP_07274851.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|318058819|ref|ZP_07977542.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actG] gi|318075294|ref|ZP_07982626.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actF] gi|333023793|ref|ZP_08451857.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] gi|302431404|gb|EFL03220.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|332743645|gb|EGJ74086.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] Length = 509 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + + + LA ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|237786506|ref|YP_002907211.1| HTH_3 family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759418|gb|ACR18668.1| transcriptional regulator, HTH_3 family [Corynebacterium kroppenstedtii DSM 44385] Length = 498 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/125 (9%), Positives = 31/125 (24%), Gaps = 5/125 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + L+ + LA GL + N+ + +R ++ + KI Sbjct: 16 VGTRLKQLRKERELSQATLAHALGLSASYVNQIEND-----SRPLTSSVLRKITHVFGID 70 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + D V + + Sbjct: 71 EAFFSREDDSRLVAEVHDVTLDREVCPTSIDVQEVADLVHTHPELARALVDIHRRYRNVS 130 Query: 129 GIYAI 133 ++ Sbjct: 131 DKLSL 135 >gi|160894107|ref|ZP_02074885.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] gi|156864140|gb|EDO57571.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] Length = 313 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + + NLT LA K G+ + ++ + P + ++ + Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGIN-----MPDLSILVQLAEYYD 58 Query: 67 ETICQ 71 + + Sbjct: 59 VEMRE 63 >gi|21222594|ref|NP_628373.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256786334|ref|ZP_05524765.1| DNA-binding protein [Streptomyces lividans TK24] gi|9857155|emb|CAC04034.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 141 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + A + L ++++ E + Sbjct: 56 VAKALRISAETLYVRAGILDAERDREDVETRAVILAD 92 >gi|310828555|ref|YP_003960912.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] gi|308740289|gb|ADO37949.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] Length = 268 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 5/100 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ ++ + LA + G+ + +K + P ++ + ++ Sbjct: 5 ERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSN-----PDINNLVFLSEIFEVSLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 +L+ E+ K + + G P Sbjct: 60 ELIKGEAPQASEKEETIKIVEVPCSRHYEYKSRHHIGGIP 99 >gi|295705479|ref|YP_003598554.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803138|gb|ADF40204.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + +++ + L+ LA+ A + P+ ++ +R + K L Sbjct: 5 DIGKKVEKFRKEKGLSSRELAKLADITPSMLSQIERGLANPSISTLKL--LAKSLDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + +++ S F + + VP + + Sbjct: 63 SFLLEEINTSHLVVRSNERKTMKVKELKYSLLSPDFTGNLATAI------MEVPPMMASS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 A + ++ + + Sbjct: 117 ETPLAHKGEEVAYVLEG 133 >gi|256544578|ref|ZP_05471950.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] gi|256399467|gb|EEU13072.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] Length = 132 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 8/124 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ E NLT LA+ G+ + ++ + + R R KI E + Sbjct: 7 LRKLRENKNLTQEELAKLVGVSLKTISRYEMGESKPRYR--------KIYDKLAEVLDTS 58 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 D +D +E G + N I Y Sbjct: 59 HDYLVTDEENFILDVREKYGYKGAKDAKEMVDGVIGLMAGGEINEEDKKAILDSIQEAYY 118 Query: 133 IQTQ 136 I Sbjct: 119 IAKN 122 >gi|237736543|ref|ZP_04567024.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420405|gb|EEO35452.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 183 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 12/165 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + L+ LA K L + ++ ++ PS E++ KI + + Sbjct: 4 IGERIKKSRNDRGLSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIATSLDVK 58 Query: 69 ICQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L++ T +K+ + + + + + Sbjct: 59 VSYLIEDEEEKQNTELVRKDNRKYIESLDSNTKMALLTTSNIDKAMEPILYEIGPYGESG 118 Query: 128 NGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVN 166 Y+ ++ + + ++ +GD L S+ + Sbjct: 119 RSYYSHHGEEFIYIVEGKLDVYIDDVVHSLNEGDSLYFKSSQRHR 163 >gi|210611267|ref|ZP_03288822.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] gi|210152031|gb|EEA83038.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] Length = 122 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I + I + ER LT A K G + +R +P E++ +L A Sbjct: 15 KRIGKRIKQCRERLGLTQEEFAEKTGFTANYISTLERGAS-----FPRCENLILLLNALE 69 Query: 67 ETICQLLDLPFSD 79 + + Sbjct: 70 VSADAIFCDVLDH 82 >gi|154125371|gb|ABS59302.1| hypothetical protein [Vibrio cholerae] Length = 80 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 3/74 (4%) Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204 S +G +++++ + + G ++ + + + K L+ + L LN YP Sbjct: 1 SGKKSIPEGAVIVVDPELPYSSGSLVVARLDDSKEATFKQLVIDGEQKY-LKPLNPQYPA 59 Query: 205 DTVEMSDIEWIARI 218 + + I + Sbjct: 60 IPINGN-CTIIGVV 72 >gi|322436743|ref|YP_004218955.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321164470|gb|ADW70175.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 73 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I + E + LA +AGL +R R E+I K+ A Sbjct: 11 GKSIRTLREERGYSQEELAERAGLHRNYVGGIERGE-----RNVGLENIVKLAKAL 61 >gi|266619410|ref|ZP_06112345.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288869037|gb|EFD01336.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 177 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 14/138 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + LT LA +A L ++ +R PS ++ IL Sbjct: 2 DIGAKLKELRILKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56 Query: 68 TICQLLDLPFS--------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I + + D +E + + + P+ + + T Sbjct: 57 SIGEFFNETPEEQIVFGKTDYFEKHDQELKNEIKWIIPNAQKNMMEPILLTLEPGGETYP 116 Query: 120 VPEIRSPHNGIYAIQTQD 137 Y +Q Sbjct: 117 -DNPHEGEEFGYVLQGNI 133 >gi|258515474|ref|YP_003191696.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779179|gb|ACV63073.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E I + E T LAR+A L + ++ +R ++ PS ++I K+ A N Sbjct: 5 GEQIRALREERGYTLQELARRANLSFSYLSEIERG-----SKKPSLKTIEKLAAVLN 56 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E+ T + LA AG+ + ++ ++ PS +++ K+ + Sbjct: 139 LGNKLKALREKQGYTQAKLAELAGVTAGLIGQIEQSKVQ-----PSLKTLEKLSGVLGIS 193 Query: 69 ICQLLDLPF 77 C + P Sbjct: 194 ACYFIMEPG 202 >gi|227824109|ref|YP_002828082.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] gi|227343111|gb|ACP27329.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] Length = 197 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 5/118 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I E + M LT LA ++G+ ++ +R P+ + + K+ +A Sbjct: 14 EQTIGERVREMRTVQALTLDELAIRSGVSRAMISRIERGEA-----SPTAQLLAKLCSAL 68 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T+ L + ++ ++ V P Sbjct: 69 GTTLSALFASAAENASPVARRAEQRLWRDPESGYLRRSVSPDGLGAPVDIVEVEFPPG 126 >gi|210610950|ref|ZP_03288675.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] gi|210152250|gb|EEA83257.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] Length = 198 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 38/172 (22%), Gaps = 16/172 (9%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T S ++I +AI + +T A++ G + K + I + + +I Sbjct: 10 TMSSSEEIGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEI-----LLKIDVLKQI 64 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 N +LL ++ + + + Sbjct: 65 ANELNVPWQELLFAKDTNTPKDNTTAEYP-------AYEFHTMSDVINALFAITELTDFS 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTS---MLPLYRKGDILILNSAIQVNCGDR 170 + K + + + G Sbjct: 118 FELTNTKPP-ESPEWTAGIKVNGKGNGKYDADFCLFMENWIEKKNMLQTGKI 168 >gi|54023526|ref|YP_117768.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54015034|dbj|BAD56404.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 391 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 5/111 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + +R +LT + LA AG+ ++ K ++ P ++ K Sbjct: 1 MPDRTRD-LGDRLASIRKRRSLTQAELAEAAGVSVSTVCKLEQHEYG----TPRLATLRK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + AA L D + ++ + D PT Sbjct: 56 LAAALGVPTSVLQGEHHGDAEPADTATLDLWEPVRHALAAPPEPDETDQPT 106 >gi|322392499|ref|ZP_08065959.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321144491|gb|EFX39892.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 99 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T + + + R L + LA+ AG+ + + +R PS KI Sbjct: 27 TKEKKDMLKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIVIALKI 81 Query: 62 LAATN 66 + Sbjct: 82 AQIFH 86 >gi|304439266|ref|ZP_07399183.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372234|gb|EFM25823.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 185 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 7/105 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + + + ++ LA K G+ + +K + P E I + T Sbjct: 5 DRIQYLRKTNGISQEELAVKVGVSRQAVSKWESGQS-----LPDLEKIITMSDYFGVTTD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 +L +K + + + S + F G+F W Sbjct: 60 YILKGIEPVADKEQKSSELKSKILYIASTA--FVWIGLFSAFAGW 102 >gi|149187669|ref|ZP_01865966.1| probable transcriptional regulator [Vibrio shilonii AK1] gi|148838549|gb|EDL55489.1| probable transcriptional regulator [Vibrio shilonii AK1] Length = 180 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/191 (9%), Positives = 54/191 (28%), Gaps = 18/191 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + ++ LA+++G+ + ++ ++ + PS S+ KIL A Sbjct: 2 DVGKQLKTIRTMRGMSQRELAKRSGVTNSMISQIEQNLVN-----PSVGSLKKILDAIPI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + L +++ L + P Sbjct: 57 SMGEFFTLDVEPKDDIFFSAEQMADLGDGQIKMLLVGAKREGRQLAVLREI-YPPGSDTG 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 ++ + + + + + GD + R + Sbjct: 116 TDFIEHDGEEGGVIIRGEIEI--------TVGSHTRVLKAGDSYYFETRKPH----RFRN 163 Query: 188 RRGRSIDLMSL 198 + +L+S Sbjct: 164 KGKVECELISA 174 >gi|170728642|ref|YP_001762668.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813989|gb|ACA88573.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 12/147 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ +H LT LA AG+ + + PS + K+ A T Sbjct: 5 INEGIKRLRAQHKLTQIELAEMAGIPRATLANMESSNSN-----PSISVVMKVAQALGVT 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------- 121 + L+ S T +++ + + +P Sbjct: 60 VDDLITQRQSVHVTKVERKDMPVSHQDEGKFISTRTSPISTQNLQISDVIMMPGCNTKGV 119 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML 148 + ++ + Q Sbjct: 120 PHPEGSHELFLCLDGTATLEVQGELFE 146 >gi|330399475|ref|YP_004030573.1| Cro/CI family transcriptional regulator [Burkholderia rhizoxinica HKI 454] gi|312170212|emb|CBW77251.1| Transcriptional regulator, Cro/CI family [Burkholderia rhizoxinica HKI 454] Length = 130 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +AI R LT L+ AGL S ++ +R + P + + ++ + Sbjct: 15 IGQAIARQRRLRGLTQEQLSEAAGLAQASLSQIERGRV-----LPGLDRLAQLAQLLDCR 69 Query: 69 ICQ 71 + Sbjct: 70 LVD 72 >gi|256845921|ref|ZP_05551379.1| predicted protein [Fusobacterium sp. 3_1_36A2] gi|256719480|gb|EEU33035.1| predicted protein [Fusobacterium sp. 3_1_36A2] Length = 139 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 9/141 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + ++ E+ +T L + +G+ + +R G+ + E++ K Sbjct: 1 MADLSI-----TLKKLREKKGITQQELVKLSGVGQGTIGDIER----GKIKKSRLETLEK 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I A + +L + LY G + + Sbjct: 52 IAKALKLDEEERKELFSVLVPKDIGIKILQNPLYRQLDSRGKRQFNDIIEQSALMFNDET 111 Query: 121 PEIRSPHNGIYAIQTQDTRHK 141 + AIQ+ K Sbjct: 112 ISEEDKERVLMAIQSAFFIAK 132 >gi|288947755|ref|YP_003445138.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898271|gb|ADC64106.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 79 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 15/45 (33%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 K++ + L + LA + GL ++ + R Sbjct: 7 RKELGHRLKVRRTELGLNQTELAERIGLTQAYISQWELGTRAMRI 51 >gi|238921784|ref|YP_002935298.1| hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] gi|238873456|gb|ACR73164.1| Hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] Length = 177 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S KKI + + + ++T LA K + + ++ + P + ++ Sbjct: 6 SMDQKKIGSFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGSN-----MPDISLLAQLA 60 Query: 63 AATNETICQ 71 + +I + Sbjct: 61 DFYDVSIPE 69 >gi|164687366|ref|ZP_02211394.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] gi|164603790|gb|EDQ97255.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] Length = 125 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 7/109 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ NL+ S L++ G+ ++ ++ R+P + KI + + Sbjct: 3 GQNLKKLRTSKNLSQSKLSKILGISSSTIGMYEQG-----RRFPDQTILTKIADFFDVST 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIP--LLYFPPSGSGGFFDSGVFPTGNKWN 116 LL + T + +L P + G +D+ + Sbjct: 58 DYLLGRNPQNPPTEFNNATDAMEFILKLPTVMAYGGYDATKLSDEEIID 106 >gi|166033610|ref|ZP_02236439.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210608449|ref|ZP_03287825.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|317500066|ref|ZP_07958301.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] gi|166026795|gb|EDR45552.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210153068|gb|EEA84074.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|316898551|gb|EFV20587.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH + I + + + LA K G++ S +K +R +P+ E++ KI+ Sbjct: 7 KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87 + T +LL + +EK+ Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84 >gi|257871225|ref|ZP_05650878.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805389|gb|EEV34211.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 346 Score = 48.6 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + ++ LT LA++ G+ + NK ++ P + I + Sbjct: 2 EMGEVIRQYRKKKGLTQEELAKRLGVTAPAVNKWEKGHS-----HPDILLLAPIARLLDI 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|258512333|ref|YP_003185767.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479059|gb|ACV59378.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 165 Score = 48.6 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 5/106 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ + LT + LA +A L ++ + R P ++ +I A Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYE-----TNRRQPDERTLAQIAEALGVE 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + Q+ + + + K + + + G+ Sbjct: 65 MTQIAPHLTASAASRQAKPAPNESHPGDRAAAASEPNRAEREVGDA 110 >gi|83717911|ref|YP_440137.1| Cro/CI family transcriptional regulator [Burkholderia thailandensis E264] gi|83651736|gb|ABC35800.1| transcriptional regulator, Cro/CI family, putative [Burkholderia thailandensis E264] Length = 189 Score = 48.6 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 6/92 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S S++ + + + ++ L+ LA++AG+ + + ++ PS S+ K+ Sbjct: 5 PSMSNE-VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQ-----SRVSPSVGSLKKL 58 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 L ++ + + R+ + E+P L Sbjct: 59 LECIPMSLAEFFTFEVDENRSVVSRRDEMPNL 90 >gi|119714341|ref|YP_921306.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614] gi|119535002|gb|ABL79619.1| helix-turn-helix domain protein [Nocardioides sp. JS614] Length = 210 Score = 48.6 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 AI R+ + L+ S LA ++G+ + + +R P+ E+IF + I Sbjct: 17 RAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGN-----PTLETIFALSRGLGVPIG 71 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 +L+ T ++ + + ++ +P R Sbjct: 72 ELVSSEEEAASTFVGRDDARHIRGVAVELMLYDRFASTGSATEIYDFRCLPGDR 125 >gi|320006892|gb|ADW01742.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 202 Score = 48.6 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 6/130 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ + +T + L+ G+ ++ ++ + G R PS E + I A Sbjct: 21 VGPRLRRLRKDRGVTLAALSEATGISVSTLSRLESGG-----RRPSLELLLPIARAHEVP 75 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY-FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L+ P K P + G + V + Sbjct: 76 LDDLVGAPPVSDPRVRAKPIVHGSRTSLPLTSRPGGLQAYKVVQKAPCTEVPEQRTHEGY 135 Query: 128 NGIYAIQTQD 137 +Y + + Sbjct: 136 EWLYVLSGRL 145 >gi|253579239|ref|ZP_04856509.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251849337|gb|EES77297.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 313 Score = 48.6 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + + NLT LA K G+ + ++ + P + ++ + Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGIN-----MPDLSILVQLAEYYD 58 Query: 67 ETICQ 71 + + Sbjct: 59 VEMRE 63 >gi|251791287|ref|YP_003006008.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247539908|gb|ACT08529.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 195 Score = 48.6 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 48/146 (32%), Gaps = 17/146 (11%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + +++ E + + + L++ +G+ + ++ +R P+ + ++ A Sbjct: 14 TDRRLAERLAALRRERGWSLDELSQSSGISRATLSRLERMES-----SPTAVLLGRLCAV 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLY-----------FPPSGSGGFFDSGVFPTGN 113 T+ LL ++ + P +G G P G Sbjct: 69 YGCTMSSLLAEVEIQLPQKLSAAQQPVWIDPETGFIRRSVSPPSAGFRAEMIHGELPAGA 128 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTR 139 + + P + + +Y ++ Q Sbjct: 129 RIDYHA-PPLAGLEHHLYVLEGQLVM 153 >gi|148244468|ref|YP_001219162.1| hypothetical protein COSY_0313 [Candidatus Vesicomyosocius okutanii HA] gi|146326295|dbj|BAF61438.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 138 Score = 48.6 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 ++ + M+P + + I+I++ +++++ +++ +I + I R R Sbjct: 19 SEPFALQNLGKYMIPEFSENCIVIIDPSMKIHNHAYTVVRYDM-EIYFRQYIERGSRKF- 76 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L+ LN Y + + + ++ Sbjct: 77 LICLNTQYDDIEL-KGEFTVVGCVI 100 >gi|323485345|ref|ZP_08090694.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] gi|323401381|gb|EGA93730.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] Length = 177 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 35/139 (25%), Gaps = 16/139 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + LT LA +A L ++ +R PS ++ IL Sbjct: 2 NIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56 Query: 68 TICQLLDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 TI + + + + K P + + + Sbjct: 57 TIGEFFNETPEEQIVFGKNDYFTKEDTELKNEIKWIIPNAQKNIMEPIHLVLSPGGSTYP 116 Query: 119 GVPEIRSPHNGIYAIQTQD 137 P Y +Q Sbjct: 117 DTP--HEGEEFGYVLQGSI 133 >gi|309774998|ref|ZP_07670014.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319936258|ref|ZP_08010677.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|325262574|ref|ZP_08129311.1| transcriptional regulator, PbsX family [Clostridium sp. D5] gi|308917252|gb|EFP62976.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319808690|gb|EFW05232.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|324032406|gb|EGB93684.1| transcriptional regulator, PbsX family [Clostridium sp. D5] Length = 211 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH + I + + + LA K G++ S +K +R +P+ E++ KI+ Sbjct: 7 KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87 + T +LL + +EK+ Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84 >gi|302558470|ref|ZP_07310812.1| signal peptidase [Streptomyces griseoflavus Tu4000] gi|302476088|gb|EFL39181.1| signal peptidase [Streptomyces griseoflavus Tu4000] Length = 144 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198 + SM+P GD L+++ +V GD ++++ +V K RR ++ Sbjct: 21 EVTGPSMVPTLHHGDRLLVHYGARVKRGDVIVLRHPFQQDLLVVKRAAERRDGGWWVLGD 80 Query: 199 NCCYP-----VDTVEMSDIEWIARI 218 N Y V ++ + R+ Sbjct: 81 N-AYAGGDSTDYGVVPDEL-VLGRV 103 >gi|222530625|ref|YP_002574507.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457472|gb|ACM61734.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 118 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 5/92 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +KKI + + + ++ T +A+ G+ + + R S + + + Sbjct: 1 MKEEVYKKIGKRLQELRKQRGFTQEQVAKYLGITQEQLSHYENG-----KREVSVDILLQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + LL + + + Sbjct: 56 LARLYGCDYNYLLGEEQNTDEQITMNFRADEI 87 >gi|251778650|ref|ZP_04821570.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082965|gb|EES48855.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 96 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 5/73 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + +T LA + +S N + G+E PS + KI N + Sbjct: 2 LGDRIKSLRKEQGITQDQLAEYINVSRSSVNGYENDGVE-----PSLSVLVKISDRFNVS 56 Query: 69 ICQLLDLPFSDGR 81 + LL+ Sbjct: 57 LDYLLERTEEKHN 69 >gi|167578709|ref|ZP_02371583.1| transcriptional regulator, Cro/CI family, putative [Burkholderia thailandensis TXDOH] gi|167616842|ref|ZP_02385473.1| transcriptional regulator, Cro/CI family, putative [Burkholderia thailandensis Bt4] gi|257140768|ref|ZP_05589030.1| Cro/CI family transcriptional regulator putative [Burkholderia thailandensis E264] Length = 183 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + ++ L+ LA++AG+ + + ++ PS S+ K+L Sbjct: 3 NEVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQ-----SRVSPSVGSLKKLLECIP 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ + + R+ + E+P L Sbjct: 58 MSLAEFFTFEVDENRSVVSRRDEMPNL 84 >gi|291546039|emb|CBL19147.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 318 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + + NLT LA K G+ + ++ + P + ++ + Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGIN-----MPDLSVLVQLAEYYD 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + +LLD S + KE + + Sbjct: 59 VEMRELLDGERSQTMNKDMKETLDKVAVYEE 89 >gi|331085708|ref|ZP_08334791.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406631|gb|EGG86136.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 129 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + ++ LA A L + + R PS ES+ KI A T Sbjct: 8 IGIRIKETRNQQGISAEELAELANLSSVYISYIENA-----KRKPSLESLIKICNALGIT 62 Query: 69 ICQLLDLPFSDGRTTE 84 + +LL T Sbjct: 63 LDELLYGNLLYNPTEY 78 >gi|313885249|ref|ZP_07819001.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619940|gb|EFR31377.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 371 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ LT LA G+ ++ +K +R P ++ +I + Sbjct: 7 VGPQIKIFRKQKGLTQEALAEALGVTVSAVSKWERGQT-----LPDLPTLLEIAQFFQIS 61 >gi|238924521|ref|YP_002938037.1| hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|238876196|gb|ACR75903.1| Hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|291525206|emb|CBK90793.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291529334|emb|CBK94920.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 179 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + ++ LT LA +A L ++ +R PS ++ I+ Sbjct: 2 DIGHRMKELRIQYGLTQQELADRAELTKGFISQLERNQN-----SPSVGTLLDIIQCLGM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 T + + + + + Sbjct: 57 TPAEFFTDSEPEQIVYKANDYFEKI 81 >gi|29830555|ref|NP_825189.1| DNA-binding protein [Streptomyces avermitilis MA-4680] gi|29607667|dbj|BAC71724.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680] Length = 158 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + A + L ++ E E + Sbjct: 56 VAKALRISAETLYVRAGILDAERDRDEVETRAVLLAD 92 >gi|325134241|gb|EGC56889.1| hypothetical protein NMBM13399_1086 [Neisseria meningitidis M13399] gi|325144713|gb|EGC67010.1| hypothetical protein NMBM01240013_0858 [Neisseria meningitidis M01-240013] gi|325204122|gb|ADY99575.1| conserved domain protein [Neisseria meningitidis M01-240355] gi|325206098|gb|ADZ01551.1| conserved domain protein [Neisseria meningitidis M04-240196] Length = 56 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 5/52 (9%) Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILWA 221 D+ K + + + S N Y +++ DI I R+ W Sbjct: 1 MRIGNDLFVKRVQRIP-GKLLVTSENPRYAPFEIDLSNTQDDIAIIGRVEWY 51 >gi|302878682|ref|YP_003847246.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581471|gb|ADL55482.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 124 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ N T + LA + G+D + ++ +R PS + K+ A Sbjct: 16 LGANIAERRKKLNWTQAELAERIGVDTETVSRFERGSN-----LPSLHRLEKLAEALKIP 70 Query: 69 IC 70 + Sbjct: 71 LY 72 >gi|261339922|ref|ZP_05967780.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] gi|288317836|gb|EFC56774.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] Length = 191 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 38/148 (25%), Gaps = 14/148 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + S LA +A + +K +R P+ + ++ A Sbjct: 9 NQRISARIRLERESRGWSLSELADRASVSRAMIHKIERGES-----SPTATLLARLSGAF 63 Query: 66 NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 ++ L+ + + + L + D + Sbjct: 64 GISMSTLIARAEMQEGKLLRLANQPVWRDPQTHYLRRHVSPRTDLPIDLVQVELPAGSD- 122 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 V +P + Sbjct: 123 VPMPASSYALARQLIWLQSGKLVFLEGD 150 >gi|34496668|ref|NP_900883.1| hypothetical protein CV_1213 [Chromobacterium violaceum ATCC 12472] gi|34102523|gb|AAQ58888.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 115 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I +A+ R + + LA K G+ + ++ +R I+ P+ + ++ Sbjct: 10 NQRIGQAVARHRKALGMNQEDLAEKLGVGLEAISRLERGRIK-----PTLVRLLELAEVL 64 Query: 66 NETICQ 71 ++ Sbjct: 65 GCSVND 70 >gi|312887403|ref|ZP_07747002.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300043|gb|EFQ77113.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 138 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 3/103 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +F I I+R+ E + LA G+ + ++ ++ E I K Sbjct: 1 MQTFRKIHIGRNIERLREFKGIKQEVLASGLGVSQQTISRIEQSETVD---EVKLEQIAK 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 +L T E I D T Y S Sbjct: 58 LLGVTKEAIKNYSDEAVIFHIQTMNDNASANYQYNSNSVERIV 100 >gi|210617016|ref|ZP_03291351.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787] gi|210149539|gb|EEA80548.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787] Length = 163 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + ++ +++ + ++++ + R PS + I K+ Sbjct: 8 QIGSTIKELRKAKGISQKEMSKLLDIPYSTYSNYENNN-----REPSADVIKKVSDILEI 62 Query: 68 T 68 + Sbjct: 63 S 63 >gi|169342435|ref|ZP_02863498.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169299434|gb|EDS81499.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 330 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 11/219 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++++ E++N + L FN+ KR N + + K T + ++ Sbjct: 92 LNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDIKLFQELSKEFTNTLDKEHEI 151 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNG 129 + + F S + F + V + Sbjct: 152 NLSDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISK 211 Query: 130 IYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 A+ + + + SM L++ +++I GD ++ + Sbjct: 212 SIALPSNYKDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC-KK 270 Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222 I ++ ++L + Y + + SDI I ++ S Sbjct: 271 IHKKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 308 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +++ L+ + LA K G+ T+ +R +E P+ ++ ++ N + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVE-----PNIYTLIQLSKLMNRS 63 >gi|120401814|ref|YP_951643.1| hypothetical protein Mvan_0799 [Mycobacterium vanbaalenii PYR-1] gi|119954632|gb|ABM11637.1| protein of unknown function DUF955 [Mycobacterium vanbaalenii PYR-1] Length = 475 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGARIRQLRSERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + ++ L + G P Sbjct: 61 ATFFASQDDTRLIAELREVLMDRDLDVDVDPAEVADMVGSHPA 103 >gi|289671657|ref|ZP_06492547.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] gi|302187361|ref|ZP_07264034.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] gi|330941463|gb|EGH44274.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330954133|gb|EGH54393.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] gi|330970149|gb|EGH70215.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 182 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + L+ LAR++G+ + + ++ + PS S+ K+L T+ Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58 Query: 70 CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 G+ + + + PS F P ++ Sbjct: 59 ADFFTFDQPPGQDQYVFRAGDQPDLGRNGARLLLVGATLPSRQMRFLREQYAP---GADS 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P + S + + GD Sbjct: 116 GDEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PGDGYYFPTTL 159 Query: 178 GDIVAKVLISRRGRSIDLMSLN 199 + +++S N Sbjct: 160 PH----RFRNIGQDEAEIISAN 177 >gi|167041843|gb|ABZ06584.1| putative helix-turn-helix motif protein [uncultured marine microorganism HF4000_097M14] Length = 474 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 54/194 (27%), Gaps = 24/194 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I ++ + +A+K + P+ N + R S + + K+ Sbjct: 7 QIGYKIKSKRRSLGISQADMAKKLSISPSYLNLIESG-----KRKISVDLLLKVANELGI 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSP 126 I + ++ L+ D F NT + Sbjct: 62 EISDISKKTDTNL--------YQNLMDVLGDNLFEDLDITNFDIKEIINTSPLIAKALIK 113 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 Y + Q+ K ++ S +++ G+ + + + L Sbjct: 114 LGDNYKKKNQEIVSKVENISGK---------FIDNQKNSFPGEVVSDFIQENENYFPKLE 164 Query: 187 SRRGRSI-DLMSLN 199 + ++ + N Sbjct: 165 EFANKVFSEIQNDN 178 >gi|149927176|ref|ZP_01915433.1| hypothetical protein LMED105_07038 [Limnobacter sp. MED105] gi|149824115|gb|EDM83336.1| hypothetical protein LMED105_07038 [Limnobacter sp. MED105] Length = 792 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 29/136 (21%), Gaps = 19/136 (13%) Query: 97 PSGSGGFFDSGVFPTGNKWNTVGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 + + F G + + SM G Sbjct: 645 EAANSVPIFDLKFAAGQFSEYQQADTFDHVVLPAHLRASEGYFVARVEGDSMNKRIPPGA 704 Query: 156 ILILNSAIQ-VNCGDRLLIKPRT-------GDIVAKVLISRR--------GRSIDLMSL- 198 + + Q G ++++ R G K S + + L Sbjct: 705 WCLFHFNPQGTRNGKIVVVQHRRISDPELGGQYTIKRYKSEKHFGEDGVVNSVVVLTPES 764 Query: 199 -NCCYPVDTVEMSDIE 213 N + + D E Sbjct: 765 TNDKHEAIVLSAEDAE 780 >gi|83940972|gb|ABC48877.1| hypothetical protein [Enterococcus faecium] Length = 203 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 47/169 (27%), Gaps = 8/169 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + + ++ LA K G+ + +K + P E + + T Sbjct: 5 DRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQST-----PDLEKVIIMSDFFGVTTD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 +L +K ++ + + S + W + E+ + I Sbjct: 60 YILKGIEPVNDKEQKSKEIASKILYISSTAFVAIGLLC--AFGGWYELQTMEVVAGSMII 117 Query: 131 YAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 A+ + Y +I + + + + P Sbjct: 118 QAVGIIGYFIARILSEEKATFYVSWFNIIGITFMPIFYDYGIYFYPCFQ 166 >gi|86559618|ref|YP_473438.1| LexA repressor [Clostridium perfringens] gi|86475890|dbj|BAE79065.1| LexA repressor [Clostridium perfringens] Length = 330 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 11/219 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++++ E++N + L FN+ KR N + + K T + ++ Sbjct: 92 LNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDIKLFQELSKEFTNTLDKEHEI 151 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNG 129 + + F S + F + V + Sbjct: 152 NLSDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISK 211 Query: 130 IYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 A+ + + + SM L++ +++I GD ++ + Sbjct: 212 SIALPSNYKDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC-KK 270 Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222 I ++ ++L + Y + + SDI I ++ S Sbjct: 271 IHKKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 308 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +++ L+ + LA K G+ T+ +R +E P+ ++ ++ N + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVE-----PNIYTLIQLSKLMNRS 63 >gi|325126457|gb|ADY85787.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 119 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + R ++ LA G+ + + + + P +++ KI + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVDKIANIFGVS 60 Query: 69 IC 70 Sbjct: 61 RN 62 >gi|325264311|ref|ZP_08131042.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030382|gb|EGB91666.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 139 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + LT LA K G + + + R P E + KI N Sbjct: 3 VGDNIKKARKNAGLTQKELAEKCGAAEITIRQYES-----SKREPRNEQLMKIARLLNVE 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + LL + +K + L Sbjct: 58 LYDLLGYTVPEQNEHVQKARAQVLQDI 84 >gi|288573106|ref|ZP_06391463.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568847|gb|EFC90404.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 212 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 38/137 (27%), Gaps = 1/137 (0%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + +R LT LA+K G+ T+ ++ E +R + + + T+ Sbjct: 3 QTGDRIKELRKRKQLTQDQLAQKMGVSRTTVVSWEKSKFEP-DRQNTIDLAAALETTTSY 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + D P+ P + + Sbjct: 62 LMGETDDPSPQKADRQVPSGILAPMRQETGLSLDEAAALIDLPAEDLELMEKYEDRADSV 121 Query: 128 NGIYAIQTQDTRHKTQD 144 I+ +D Sbjct: 122 LKQKLIKAYGRYLSARD 138 >gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 513 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I + LT + LA G ++ N+ +R S + + ++ A Sbjct: 14 RIGTLIRDARKHRGLTQTQLADLLGTSQSAVNRIERGAQN-----LSVDMLNRVSEAL 66 >gi|169334705|ref|ZP_02861898.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] gi|169257443|gb|EDS71409.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] Length = 125 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 5/109 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +++ + + I + ++ + S LA K +K +R + S +++ Sbjct: 1 MIKINYENLGKQIKKYRKQKKYSQSDLAEKIDKSVQHISKIERGISKA-----SLQTLVD 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 I A + ++ +LL++ + I + F + Sbjct: 56 ITNALDISMDELLNMSVKKSSDNFLNKDFINIFSDCSLKERTFLMENLL 104 >gi|46579929|ref|YP_010737.1| transcriptional regulator cI, truncation [Desulfovibrio vulgaris str. Hildenborough] gi|46449345|gb|AAS95996.1| transcriptional regulator cI, truncation [Desulfovibrio vulgaris str. Hildenborough] gi|311234073|gb|ADP86927.1| helix-turn-helix domain protein [Desulfovibrio vulgaris RCH1] Length = 96 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 5/88 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 IDR+ E L+ S LAR +GL + + R +P S + + QL Sbjct: 13 IDRIREEQGLSYSALARMSGLKTPTVWRHCRGKS-----FPDLGSCAAYARSLGISFEQL 67 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 F+ T+ ++ S Sbjct: 68 RPDLFAGTPTSPSTPRKPRSHQHDASKQ 95 >gi|171317966|ref|ZP_02907140.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171096866|gb|EDT41740.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 159 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 10/120 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I +A+ + +LT + LA+ AGL + N+ + G+ + + +L Sbjct: 5 EIGQAVAKRRAELDLTQAQLAKLAGLSRLTVNQLE----TGKIKDLGVNKLLPLLGVLGI 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN------KWNTVGVP 121 + S +G P G + V +P Sbjct: 61 ELHAQPRPAQSGLYKAVVSSNVSYRGELTERLLADALTTGQIPAGYESQISVILDEVPLP 120 >gi|313897216|ref|ZP_07830760.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957937|gb|EFR39561.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 212 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I + + ++ LA KAG+ + +K + P E I + Sbjct: 2 KLAERIQYLRKMKGISQEELAEKAGVSRQAVSKWESDQST-----PDVEKIIIMSDYFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 T +L + +K + + + S + Sbjct: 57 TTDYILKGIQTVESKEQKSRELASKVLYISSAAFVVI 93 >gi|294633421|ref|ZP_06711980.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292831202|gb|EFF89552.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 181 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 11/117 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + ++ + + L+ S LAR++G+ + ++ + R P+ ++++ + A Sbjct: 4 NDEVGRRLRELRTARGLSLSELARRSGVGKGTLSELESGT-----RNPTLDTLYALTTAL 58 Query: 66 NET------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 N +G + + + + + G Sbjct: 59 NRPLSAVLADDAPPHGEHHEGAVSGSAVTAVLVERHEDADAVTDVFRVTIAAGATQE 115 >gi|262371446|ref|ZP_06064763.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262313668|gb|EEY94718.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 191 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 42/179 (23%), Gaps = 24/179 (13%) Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + + + E K + F G + T Sbjct: 1 MGPDGAPSPTVNTVFEKIQKEHELGSKFDLKEISVKTRLEIPSALERFSAGPAFGTKDHI 60 Query: 122 E-IRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SML + D +++ +I D +L + Sbjct: 61 DKSIDLNDFLIFNPISTFMGRVDSESMLYAGFEIDDPFLVDKSITAQHRDIVLALIDERE 120 Query: 180 IVAKVL-------------------ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218 I K L I L + N Y + S I + Sbjct: 121 ITLKRLMMTAKMSKQEIKEMFGDEDYELPP--IWLRAENPAYEHIIPKDSQSISIQGVV 177 >gi|227532834|ref|ZP_03962883.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189538|gb|EEI69605.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 185 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + + ++ + +T S LA + + + + + P ++I + Sbjct: 1 MSDLS---LGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQ-----PDLQTICR 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE 89 + + T+ LL ++ Sbjct: 53 LASYYQLTVDDLLHQQSVPHADDQRAITW 81 >gi|297193564|ref|ZP_06910962.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718161|gb|EDY62069.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 151 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 7 MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L + + ++ Sbjct: 62 VAKALRISAETLYVRAGILDEQERDELETRAVI 94 >gi|25011198|ref|NP_735593.1| hypothetical protein gbs1147 [Streptococcus agalactiae NEM316] gi|23095622|emb|CAD46806.1| unknown [Streptococcus agalactiae NEM316] Length = 65 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + ++ + ++ L+ LA + G+ + + + ST++ K Sbjct: 1 MTTITQNRV----KELRKQAGLSQQALADQIGVMRKTISHWELGN-----HRISTDNAKK 51 Query: 61 ILAATNETICQ 71 + +I Sbjct: 52 LSQFFQVSIDD 62 >gi|19551915|ref|NP_599917.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62389574|ref|YP_224976.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41324909|emb|CAF19390.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 124 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 1/92 (1%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNETI 69 + ++ + LA +G+ + + +R +G P +I+++ A + Sbjct: 15 SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 74 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 L+ E + +P Sbjct: 75 IALMPAGSVPVAKICVDETAAIDVRWPSEKDP 106 >gi|317501524|ref|ZP_07959721.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897079|gb|EFV19153.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 5/82 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA G++ S +K +R +P+ +++ KI+ T Sbjct: 11 LGENIQTIRKHRKMKQQELADAIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLEVT 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90 +LL + + EK+ + Sbjct: 66 PNELLSGEWKFVQQAEKEVNQF 87 >gi|310644825|ref|YP_003949584.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309249776|gb|ADO59343.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 114 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K+I I + LT LA A LD +R R S +++ K Sbjct: 1 MAEL-RKQIGTRIRAIRNAKGLTQQKLADIASLDYRYIGALERGE-----RNFSIDTLEK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTE 84 +L A N +I +L+ Sbjct: 55 VLTALNVSISELMFSEEHMTTDEM 78 >gi|218663328|ref|ZP_03519258.1| probable transcriptional regulator protein, LacI family [Rhizobium etli IE4771] Length = 190 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 6/133 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I + LT LA +G+ ++ +R P+ + + Sbjct: 1 MEQQLEQAIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVG 119 I AA ++ +++++ + P+ V Sbjct: 56 ICAALGLSLSAFFAEEGQQASPLARRQEQQVWRDPENRLHQAVGLGAPARPSDVDIVEVE 115 Query: 120 VPEIRSPHNGIYA 132 P +A Sbjct: 116 FPAGARVSFPPHA 128 >gi|254388231|ref|ZP_05003467.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294817295|ref|ZP_06775937.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197701954|gb|EDY47766.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294322110|gb|EFG04245.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 389 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + +R L+ LA+ +G+ + K ++ P E++ K+ + + Sbjct: 6 GRKLKEVRKRRGLSQRDLAKASGVSLSLIRKLEQGDYG----TPMLETLRKLASVLDIPT 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92 L+ D T + + Sbjct: 62 MCLVGEDREDRATPMTTDLWQNV 84 >gi|146319181|ref|YP_001198893.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146321385|ref|YP_001201096.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253752226|ref|YP_003025367.1| DNA-binding phage protein [Streptococcus suis SC84] gi|253754052|ref|YP_003027193.1| DNA-binding phage protein [Streptococcus suis P1/7] gi|253755986|ref|YP_003029126.1| DNA-binding phage protein [Streptococcus suis BM407] gi|145689987|gb|ABP90493.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145692191|gb|ABP92696.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251816515|emb|CAZ52151.1| putative DNA-binding phage protein [Streptococcus suis SC84] gi|251818450|emb|CAZ56279.1| putative DNA-binding phage protein [Streptococcus suis BM407] gi|251820298|emb|CAR46798.1| putative DNA-binding phage protein [Streptococcus suis P1/7] gi|292558817|gb|ADE31818.1| prophage Sa05, DNA-binding protein [Streptococcus suis GZ1] gi|319758615|gb|ADV70557.1| transcriptional regulator [Streptococcus suis JS14] Length = 173 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + +NLT LA+K G++ + K + R + E + K Sbjct: 4 LKTLRKENNLTQEELAKKIGVNLRTLQKWENGESS--IRTKNAEKLAKHF 51 >gi|254450110|ref|ZP_05063547.1| UmuD protein [Octadecabacter antarcticus 238] gi|198264516|gb|EDY88786.1| UmuD protein [Octadecabacter antarcticus 238] Length = 144 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167 FP+ + + + P + + + + + + R GDI+ ++ A + Sbjct: 28 FPSPAGDD---LEDEIDPIAWVVRHPSSTFWWRVEGDCLWDVGIRDGDIIAVDRAGKRRL 84 Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN--CCYPVDTVEMSDIEW--IARIL 219 G R ++ G + AK+L R G L N +P + W IA ++ Sbjct: 85 G-RAVLAVVEGAVTAKILRKRNGN-FYLAPANTREAFPDIELNEDSEIWGVIAGVV 138 >gi|241207203|ref|YP_002978299.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861093|gb|ACS58760.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 188 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 14/136 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I + + LT LA +G+ ++ +R P+ + + Sbjct: 1 MEPELEQAIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEA-----SPTASLLAR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---- 116 I AA ++ ++E++ G+ V P G + Sbjct: 56 ICAALGLSLSAFFAEDGQASPLARRQEQQ-----VWRDPETGYMRRSVSPPGTASDVDIV 110 Query: 117 TVGVPEIRSPHNGIYA 132 V P +A Sbjct: 111 EVEFPAGARVSFPPHA 126 >gi|157370727|ref|YP_001478716.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157322491|gb|ABV41588.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 189 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 AI R ER L+ + LAR+AG+ ++ ++ + PS E+++ + A + + Sbjct: 17 SAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGN-----PSLETLWALAMALDVPVS 71 Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92 +L+ P + E + Sbjct: 72 RLISQPRQHVQVIRANEGVTTV 93 >gi|21323451|dbj|BAB98078.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] Length = 128 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 1/92 (1%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNETI 69 + ++ + LA +G+ + + +R +G P +I+++ A + Sbjct: 19 SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 78 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 L+ E + +P Sbjct: 79 IALMPAGSVPVAKICVDETAAIDVRWPSEKDP 110 >gi|326331894|ref|ZP_08198181.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325950391|gb|EGD42444.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 209 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 10/143 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T + + + ++ +R ++T S LA + G+ ++ ++ + R P+ E + + Sbjct: 5 TDRTLDAVGPRLKQLRQRRDITLSHLAEETGISTSTLSRLEAG-----LRRPTLEQLLPL 59 Query: 62 LAATNETICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 A T+ L+D P + +L G V PTG Sbjct: 60 ARAYGVTLDDLVDAPPTGNPRINLRPIPCADGSMILPLTRRPGGIQAYKFVLPTGRDDAH 119 Query: 118 VGVPEIRSPHNGIYAIQTQDTRH 140 + ++ +Y + + Sbjct: 120 PDL-RTHEGYDWVYVLNGRLRLV 141 >gi|317490116|ref|ZP_07948605.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325833610|ref|ZP_08166059.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316910821|gb|EFV32441.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325485534|gb|EGC88003.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 380 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + ++ L+ LA + G+ + +K +R P T+++ + Sbjct: 4 EIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSES-----SPDTDNLIALAQLYGL 58 Query: 68 TICQLLDLPF 77 ++ LL + Sbjct: 59 SLDDLLYVDE 68 >gi|271966776|ref|YP_003340972.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509951|gb|ACZ88229.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 198 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 10/167 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESIF 59 ++ + + ++ + LA++ G+ ++ ++ +R I G+ ++ Sbjct: 18 EARLADRLAQLRVERGWSLEELAQRTGVSRSTLSRLERMEISPTAAMLGKLCAAYGRTMS 77 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++LA Q + E + P G G GV G + Sbjct: 78 QLLAEAEAEPPQTVRADRQVVWRDETSGFTRRSVSPPHPGLRGEIVEGVLRPGADISY-D 136 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 P + I+ ++ + + R GD L + Sbjct: 137 GPPVPGLEQHIWVLEG---VLEVTTGGGVHEIRAGDCLRFRLWDRSR 180 >gi|257792196|ref|YP_003182802.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476093|gb|ACV56413.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 380 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + ++ L+ LA + G+ + +K +R P T+++ + Sbjct: 4 EIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSES-----SPDTDNLIALAQLYGL 58 Query: 68 TICQLLDLPF 77 ++ LL + Sbjct: 59 SLDDLLYVDE 68 >gi|219883177|ref|YP_002478339.1| prophage MuMc02, S24 family peptidase [Cyanothece sp. PCC 7425] gi|219867302|gb|ACL47640.1| prophage MuMc02, S24 family peptidase [Cyanothece sp. PCC 7425] Length = 51 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 4/45 (8%) Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIARILWA 221 + K L + I + S + Y V ++ D + R++W Sbjct: 1 MVKRLQRQPKGIIRVTSDDPAYDPFLVNLADESTDFAVLGRVVWI 45 >gi|261409127|ref|YP_003245368.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329923481|ref|ZP_08278961.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261285590|gb|ACX67561.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328941241|gb|EGG37537.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 122 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + E+ T LA G+ + + ++ R P E++ ++ + +I Sbjct: 4 GERIAELREQRGWTQEELATSVGITRAALSHYEKN-----RRKPDFETLTRLADLFDVSI 58 Query: 70 CQLLDLPFSDGRTTEKKEKEI 90 L+ + + + + Sbjct: 59 DYLIGRTTLEKSVLDPEVRSF 79 >gi|167749516|ref|ZP_02421643.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702] gi|167657544|gb|EDS01674.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702] Length = 159 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E + ++ + LT LA G+ +S+ K +R I PS E++ KI + Sbjct: 3 EQLQQLRKSRGLTQDDLAEILGISLSSYQKYERDAI-----SPSYETLCKIADFYH 53 >gi|15887370|ref|NP_353051.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15154869|gb|AAK85836.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 121 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 EA+ ++ ER +T +A G+ P + + G+ PS + + +I N Sbjct: 6 EAVRQLRERKGVTQKEMAAAIGVSPAYLSALE----HGKRGKPSFDLLQRIAGYFNIIWD 61 Query: 71 Q 71 + Sbjct: 62 E 62 >gi|70726855|ref|YP_253769.1| hypothetical protein SH1854 [Staphylococcus haemolyticus JCSC1435] gi|68447579|dbj|BAE05163.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + NLT LA + L ++ + PS E+ IL Sbjct: 2 QIGNKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHA-----SPSMETFLNILEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + + K E+ I Y Sbjct: 57 SPSDFFKEKSKEKVLYTKNERTIYDEYD 84 >gi|88858937|ref|ZP_01133578.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2] gi|88819163|gb|EAR28977.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2] Length = 170 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 7/105 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E + ++ LT + LA K G+ + + + + + I A Sbjct: 13 NTIGERVAAERKKLGLTQTALAEKVGVTQQAIGNIENNRSDSK-------RLADIAEALG 65 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 T L + + + Y S + + P+ Sbjct: 66 VTYTYLKTGNNTTIANHLSVVNDTNVNYNINSTATYDEIKDIVPS 110 >gi|229827219|ref|ZP_04453288.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] gi|229788837|gb|EEP24951.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] Length = 202 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 5/112 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + + ++ LA K + + +K + P E + + Sbjct: 2 NISERIQELRKAKGISQEELADKIDVSRQAVSKWENGQSI-----PDLEKVILLSEYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 T +L + K +LY + +++ + Sbjct: 57 TTDYILKGIEPVKKNGTDKGLISKILYVIATFFTFTGLFTGIGRWHEYQRIE 108 >gi|312794244|ref|YP_004027167.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181384|gb|ADQ41554.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 66 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + ++ L+ L++ A + ++ + P+ +++ K+ A Sbjct: 2 LGEKIKELRQKKGLSQQKLSKLANVPQSTIWYIENGIS-----SPTLKTLEKLARALEVP 56 Query: 69 ICQL 72 + + Sbjct: 57 VHEF 60 >gi|229150033|ref|ZP_04278258.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|228633471|gb|EEK90075.1| Transcriptional regulator, MerR [Bacillus cereus m1550] Length = 181 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|198244633|ref|YP_002215542.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939149|gb|ACH76482.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 185 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 8 MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I N + P ++ T +++ ++ Sbjct: 62 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 94 >gi|218233568|ref|YP_002366514.1| DNA-binding protein [Bacillus cereus B4264] gi|218161525|gb|ACK61517.1| DNA-binding protein [Bacillus cereus B4264] Length = 181 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|254853777|ref|ZP_05243125.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300765112|ref|ZP_07075099.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] gi|258607157|gb|EEW19765.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300514237|gb|EFK41297.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] Length = 180 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 57/190 (30%), Gaps = 20/190 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T D + + + + F G+ + P N+ V + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEHT----FFEDEEKGYRIKWLVPESNEKEMEPVLLEIEAN 112 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLI 186 + + + + + + ++L G+ + +I Sbjct: 113 SCFKSFEPSL------SETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEH----QII 162 Query: 187 SRRGRSIDLM 196 +R + L+ Sbjct: 163 NRSNEQVTLI 172 >gi|254500680|ref|ZP_05112831.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222436751|gb|EEE43430.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 183 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 10/160 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESIFK 60 + + + + + + L+ LA K+G+ + ++ +R GR S+ Sbjct: 4 QDLAQRLIGLRKTKGLSLDELAEKSGISRATLSRIERGDTSPTAAALGRLATAFGVSVAD 63 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + L + + + SG G G P G + Sbjct: 64 LFGLGAAAHDAKLAQNEQAVWRDPETGFQRRSVSPAISGFRGSVIEGTLPAGAIISYAAP 123 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 P H+ + GD L Sbjct: 124 PLPDLEHHLVLLSG----ALTVVLGDTRHDLSPGDCLRFR 159 >gi|15967045|ref|NP_387398.1| putative aldehyde dehydrogenase protein [Sinorhizobium meliloti 1021] gi|307302508|ref|ZP_07582265.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307316162|ref|ZP_07595606.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|17646727|gb|AAL41014.1|AF448466_4 putative aldehyde dehydrogenase [Sinorhizobium meliloti] gi|15076318|emb|CAC47871.1| Putative aldehyde dehydrogenase [Sinorhizobium meliloti 1021] gi|306898002|gb|EFN28744.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903178|gb|EFN33768.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 182 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ RH L+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGSRLRQVRLRHKLSQRELAKRAGVTNSTISLIESNASN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLP 76 + + Sbjct: 59 GLAEFFSFE 67 >gi|332654058|ref|ZP_08419802.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517144|gb|EGJ46749.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 223 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 5/84 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I + I + +R LT LA++ + + + + P E++ I Sbjct: 1 MVMRLSIAKHIRSLRKRAGLTQEELAQRLYVTRQTVSLWELGKTR-----PDVETLQAIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKK 86 + Q+L P + + Sbjct: 56 DCLGVDLLQVLYGPEQTAPQSTTR 79 >gi|328475511|gb|EGF46270.1| transcription regulator [Listeria monocytogenes 220] Length = 180 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + ++ + Sbjct: 57 TPKDFFDEEEHNQKVIYRELEH 78 >gi|303229040|ref|ZP_07315846.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-134-V-Col7a] gi|302516251|gb|EFL58187.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-134-V-Col7a] Length = 91 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+ R E L+ LA ++G+ ++ + +R S +++ KI A N Sbjct: 35 ALLRARENAGLSQRELAERSGVPQSTIARIERGYNT------SIDTLSKIAFALN 83 >gi|298386978|ref|ZP_06996532.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298260128|gb|EFI02998.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 236 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 55/210 (26%), Gaps = 23/210 (10%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA G+ + + RNR + K+ + P + E Sbjct: 24 SELASYLGVSRATLSNWC-----ARNRIDFHLLLNKMRDVDLNWLLVGKGTPRHQAKFCE 78 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-------AIQTQD 137 + + D + + + + +I D Sbjct: 79 SDLASGEVQMIHNPKTVEALDDRSVALYDITAAANLKTLLTNKRQYMVGKIQIPSIPLCD 138 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV--------AKVLIS-R 188 SM P+ + GDI+ G+ + + K + Sbjct: 139 GAVYISGDSMYPILKSGDIVGFKEINSF--GNLIYGEMYLVSFTIEGDEYLAVKYVNRSE 196 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + + L+S N + + S I +A + Sbjct: 197 KEGYLKLVSYNAHHDPMDIPFSTINAMAIV 226 >gi|294813464|ref|ZP_06772107.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] gi|294326063|gb|EFG07706.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] Length = 457 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 ++I + I R L+ LA KAGL ++ K+++ R + T Sbjct: 40 QEIGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHT 88 >gi|153208917|ref|ZP_01947136.1| DNA-binding protein/cupin domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|165923365|ref|ZP_02219702.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA 334] gi|212218472|ref|YP_002305259.1| transcriptional regulator [Coxiella burnetii CbuK_Q154] gi|120575638|gb|EAX32262.1| DNA-binding protein/cupin domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916691|gb|EDR35295.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA 334] gi|212012734|gb|ACJ20114.1| transcriptional regulator [Coxiella burnetii CbuK_Q154] Length = 183 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 12/138 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + ++ LA AG+ + K + ++ P+ + K+ A +T+ Sbjct: 6 ERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQ-----PTLDVAGKLAVALGKTLS 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPE--IRSP 126 ++L P + + + + + + + G+K V P + Sbjct: 61 EMLHSPQT---PSVIQLTTEEQAIWIDAQNIKRRNISPILEGSKVEWLFVEFPPGASLTK 117 Query: 127 HNGIYAIQTQDTRHKTQD 144 Y +T+ T+ Sbjct: 118 PLTPYTPETEKYILITKG 135 >gi|154707262|ref|YP_001424459.1| transcriptional regulator [Coxiella burnetii Dugway 5J108-111] gi|154356548|gb|ABS78010.1| transcriptional regulator [Coxiella burnetii Dugway 5J108-111] Length = 183 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 12/138 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + ++ LA AG+ + K + ++ P+ + K+ A +T+ Sbjct: 6 ERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQ-----PTLDVAGKLAVALGKTLS 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPE--IRSP 126 ++L P + + + + + + + G+K V P + Sbjct: 61 EMLHSPQT---PSVIQLTTEEQAIWIDAQNIKRRNISPILEGSKVEWLFVEFPPGASLTK 117 Query: 127 HNGIYAIQTQDTRHKTQD 144 Y +T+ T+ Sbjct: 118 PLTPYTPETEKYILITKG 135 >gi|309777433|ref|ZP_07672391.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] gi|308914829|gb|EFP60611.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] Length = 83 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 I + + ++ LT + LA +D T+ + +R + R R Sbjct: 5 IGMMLRELRKKRGLTQAQLAMMLKVDQTAVSMWERGITQPRMRK 48 >gi|241113139|ref|YP_002972974.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861347|gb|ACS59013.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 182 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + H L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 4 DIGNRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 59 GLAEFFAFEPERPRKAF 75 >gi|149916993|ref|ZP_01905494.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149822271|gb|EDM81662.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 115 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 2 TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + KK++ + R+ LT LA ++ L + + + G PS E++ K Sbjct: 8 PALDRKKLFAKRLRRLRANLGLTQEELAERSELSADTIRRLE-----GSKFNPSLETLHK 62 Query: 61 ILAATNET 68 I A + Sbjct: 63 IAAGLEMS 70 >gi|218463233|ref|ZP_03503324.1| putative phage-related transcriptional regulator protein [Rhizobium etli Kim 5] Length = 30 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 17/28 (60%), Positives = 23/28 (82%) Query: 196 MSLNCCYPVDTVEMSDIEWIARILWASQ 223 MSLN + T+++SD+EWIARI+WASQ Sbjct: 3 MSLNPEHANRTLDLSDVEWIARIIWASQ 30 >gi|206971646|ref|ZP_03232596.1| transcriptional regulator Xre [Bacillus cereus AH1134] gi|206733631|gb|EDZ50803.1| transcriptional regulator Xre [Bacillus cereus AH1134] Length = 117 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 9/64 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH++ + + E+ +T LA G+ S + P T ++ KI Sbjct: 1 MFSHQR----LKLLIEKRGITQQQLADAIGVSHVSVYNYVEG-----KKSPGTRTLQKIA 51 Query: 63 AATN 66 N Sbjct: 52 NHLN 55 >gi|282882924|ref|ZP_06291529.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300814135|ref|ZP_07094418.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297335|gb|EFA89826.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300511792|gb|EFK39009.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 179 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 20/192 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + LT LA ++ L ++ +R PS +S+ IL A Sbjct: 2 EIGNKIKELRVASGLTQEELATRSELTKGFISQIERDLT-----SPSVDSLLDILEALGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + E+ + + GFF + P N + P + S Sbjct: 57 SPSEFFSKD-----KNERIIFSEDDYFEYENEDLGFFLQWIVP--NAQKNMMEPTLISLK 109 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVL 185 G + + + + ++ G + + + K Sbjct: 110 EGGKSKKIAPFEGEVFGYVEKGSICLH---YGDKIFELKSGQTFYFEAKREHFLVNNK-- 164 Query: 186 ISRRGRSIDLMS 197 R + I + S Sbjct: 165 -KREAKVIWISS 175 >gi|169349646|ref|ZP_02866584.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] gi|169293721|gb|EDS75854.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] Length = 211 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SH + I + + + LA K G++ S +K +R +P+ E++ KI+ Sbjct: 7 KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87 + T +LL + +EK+ Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84 >gi|153008873|ref|YP_001370088.1| helix-turn-helix domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151560761|gb|ABS14259.1| helix-turn-helix domain protein [Ochrobactrum anthropi ATCC 49188] Length = 230 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 66/226 (29%), Gaps = 20/226 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S+ + I+ ++P LA+ AGL+ N GR + + + + Sbjct: 1 MSSNDSLRSRIEERVNTLGISPITLAKSAGLERGYINDLL----IGRKKSIRGDKLNIVA 56 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A LL + ++ E + +G +G P Sbjct: 57 KALQCDPEYLLLEQDEVRKHKVIEKIEFGGVC--EAGVWRSASLSNQNSGKSVPIEPDPR 114 Query: 123 IRSPHNGIYAIQTQDTRHKT--QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--- 177 N + ++ + ++ + + G ++ Sbjct: 115 FPHLRNIAFDVRGNSFAAEGISDGMTVAGIALDEWTQTIGPLST---GMIVVAHANRADG 171 Query: 178 --GDIVAKVLISRRGR-SIDLMSLNC--CYPVDTVEMSDIEWIARI 218 ++ + + + S+ + + +P V +D++ +A I Sbjct: 172 SEFELSLRRVSVKPNGISLSVRPTDPTLEFPSIDV-GNDVKIVAVI 216 >gi|157373772|ref|YP_001472372.1| DNA-binding protein [Shewanella sediminis HAW-EB3] gi|157316146|gb|ABV35244.1| DNA-binding protein [Shewanella sediminis HAW-EB3] Length = 181 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 12/147 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ +H LT LA AG+ + + G N PS + K+ A T Sbjct: 5 INEGIKRLRAQHKLTQIELAEMAGIPRATLANME-----GANSNPSISVVMKVAQALGVT 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------- 121 + L+ S T +++ + + +P Sbjct: 60 VDDLITRRQSVHVTKVERKDMPVSHQHDGKFISTRTSPISTQNLQINDVIMMPGCNTKGV 119 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML 148 + ++ + Q Sbjct: 120 PHPEGSHELFLCLEGTATLEVQGEMFE 146 >gi|91783413|ref|YP_558619.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687367|gb|ABE30567.1| Predicted transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 152 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I AI + +T L+ ++ +S ++ +R + PS E + I Sbjct: 33 IGAAIAARRKALGMTQERLSELIQIEQSSLSRIERGTLI-----PSLERLASIAEELECG 87 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + L + + + E P Sbjct: 88 LADLFYVGGVNSHDRAARVHEKLSHLTPSQQE 119 >gi|313680009|ref|YP_004057748.1| XRE family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152724|gb|ADR36575.1| transcriptional regulator, XRE family [Oceanithermus profundus DSM 14977] Length = 71 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + LA + G+ + N ++ + PS FKI A I Sbjct: 3 NRLPVLRAERGWSQAALAERLGVSRQTVNAIEKGRYD-----PSLPLAFKIAAVFGLAIE 57 Query: 71 QLLDLPF 77 + + Sbjct: 58 DVFEPEE 64 >gi|260589352|ref|ZP_05855265.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260540433|gb|EEX21002.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 203 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 6/115 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I I + + + LA G + K + IE S + +I Sbjct: 6 KLHNNQIGLRIRTARKEKGINQTELANLLGKSLRTIQKYESGEIE-----VSIAMLNEIA 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWN 116 + L+ + L GF P + W Sbjct: 61 KVLDCESTYLIGYDAERKPLENLSDIMNFLFQLDKIKELGFNIEVKRPPHYDGWE 115 >gi|225405526|ref|ZP_03760715.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] gi|225042938|gb|EEG53184.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] Length = 257 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 10/105 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+FS + I ++ ++ L+ L G+ + +K + P + + Sbjct: 6 MTAFSEQLI-----KLRKQKGLSQEQLGAAVGVTRQTVSKWELGDTT-----PELGKLVQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 + +I +L+ + + P ++ S + Sbjct: 56 LSDYFQLSIDELVGHAAENDGDRTVELNGAPAVWHYEYKSKRTWF 100 >gi|239814987|ref|YP_002943897.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801564|gb|ACS18631.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S +I + + ++ LA+ +G+ + ++ +R + PS E++ + Sbjct: 1 MRSLSAARIGAQVRALRMAAEVSGGELAKTSGISASMLSRIERGLV-----SPSVETLER 55 Query: 61 ILAATN 66 + + Sbjct: 56 LAQGLH 61 >gi|168819389|ref|ZP_02831389.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343670|gb|EDZ30434.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085906|emb|CBY95680.1| Uncharacterized HTH-type transcriptional regulator ydcN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 178 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I N + P ++ T +++ ++ Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 87 >gi|330835893|ref|YP_004410621.1| XRE family transcriptional regulator [Metallosphaera cuprina Ar-4] gi|329568032|gb|AEB96137.1| XRE family transcriptional regulator [Metallosphaera cuprina Ar-4] Length = 184 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 5/102 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +M E LT S LA++ G+ + K ++ ++ P + +I+ + I Sbjct: 8 LRKMRESAGLTQSELAKRVGVSQSYIAKIEKGSVD-----PRLSIVRRIMDELSPLIEIP 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + L T Sbjct: 63 EIALSLMHSPVISVKTDARLKDIADIMEVNNISQVPVITSEG 104 >gi|297156604|gb|ADI06316.1| UDP-N-acetylglucosamine transferase [Streptomyces bingchenggensis BCW-1] Length = 509 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQAQLAEALNTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|227512461|ref|ZP_03942510.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227084286|gb|EEI19598.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 131 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E I + +R + + +A+K G+D T+F+K K R S + + K Sbjct: 1 MASRLEQSLAERIAYLQDRSQFSQADIAKKMGIDRTAFSKIKNGT-----RKVSADELNK 55 Query: 61 ILAATNET 68 + + Sbjct: 56 LSEIFGVS 63 >gi|319939789|ref|ZP_08014145.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] gi|319811002|gb|EFW07317.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] Length = 133 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 5/83 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I + + +T LA K G+ + +K +R +P +I K+ Sbjct: 1 MKKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLS-----YPDINTIPKLAD 55 Query: 64 ATNETICQLLDLPFSDGRTTEKK 86 + ++ +L+ + + Sbjct: 56 LFDTSVDELMQGQTVMKENKKNR 78 >gi|315222450|ref|ZP_07864351.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188474|gb|EFU22188.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 133 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 5/83 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I + + +T LA K G+ + +K +R +P +I K+ Sbjct: 1 MKKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLS-----YPDINTIPKLAD 55 Query: 64 ATNETICQLLDLPFSDGRTTEKK 86 + ++ +L+ + + Sbjct: 56 LFDTSVDELMQGQTVMKENKKNR 78 >gi|282916348|ref|ZP_06324110.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] gi|282319788|gb|EFB50136.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] Length = 179 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 35/197 (17%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + NLT LA + L ++ + PS E+ I+ Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126 T + ++ +K+E+ I Y G+ + + N+++ + P Sbjct: 57 TPSEFFKDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111 Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183 + ++ + I +N G + + K Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEVYQAQEEDVLYFKA 154 Query: 184 ----VLISRRGRSIDLM 196 L + ++ Sbjct: 155 LDNHRLSNESNNETRIL 171 >gi|138896497|ref|YP_001126950.1| immunity repressor protein, phage-like protein [Geobacillus thermodenitrificans NG80-2] gi|134268010|gb|ABO68205.1| Immunity repressor protein, phage-related protein [Geobacillus thermodenitrificans NG80-2] Length = 156 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 4/113 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K+ I ++ E+ T + L+ +G+ ++ + P E+I K+ Sbjct: 1 MTKAKQFGSYIRQLREKKGYTVNQLSLYSGVSSAQISRIENGLRG----VPKPETIKKLS 56 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 A + L+ + K E+ TG+ + Sbjct: 57 EALGHSYEDLMQAAGYLDDNAQPKLPELTEKDERDIQKELERLIRGLKTGSGF 109 >gi|49483261|ref|YP_040485.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425150|ref|ZP_05601576.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427813|ref|ZP_05604211.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430448|ref|ZP_05606830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433150|ref|ZP_05609508.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436049|ref|ZP_05612096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282903647|ref|ZP_06311535.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|282905416|ref|ZP_06313271.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282908388|ref|ZP_06316219.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910675|ref|ZP_06318478.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282913873|ref|ZP_06321660.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282918797|ref|ZP_06326532.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282923919|ref|ZP_06331595.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|283770160|ref|ZP_06343052.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283957842|ref|ZP_06375293.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|293500910|ref|ZP_06666761.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509866|ref|ZP_06668575.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293526452|ref|ZP_06671137.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|295427586|ref|ZP_06820218.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591460|ref|ZP_06950098.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|49241390|emb|CAG40074.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272126|gb|EEV04258.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274654|gb|EEV06141.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278576|gb|EEV09195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281243|gb|EEV11380.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284331|gb|EEV14451.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282313891|gb|EFB44283.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282316607|gb|EFB46981.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282321941|gb|EFB52265.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282325280|gb|EFB55589.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282328053|gb|EFB58335.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330708|gb|EFB60222.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282595265|gb|EFC00229.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|283460307|gb|EFC07397.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283470309|emb|CAQ49520.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ST398] gi|283789991|gb|EFC28808.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920524|gb|EFD97587.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|291095915|gb|EFE26176.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467316|gb|EFF09833.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|295127944|gb|EFG57578.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576346|gb|EFH95062.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|312438525|gb|ADQ77596.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315193766|gb|EFU24161.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 179 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 35/197 (17%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + NLT LA + L ++ + PS E+ I+ Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126 T + ++ +K+E+ I Y G+ + + N+++ + P Sbjct: 57 TPSEFFKDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111 Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183 + ++ + I +N G + + K Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEVYQAQEEDVLYFKA 154 Query: 184 ----VLISRRGRSIDLM 196 L + ++ Sbjct: 155 RDNHRLSNESNNETRIL 171 >gi|69246753|ref|ZP_00604101.1| Peptidase S24, S26A and S26B [Enterococcus faecium DO] gi|314938028|ref|ZP_07845338.1| signal peptidase I [Enterococcus faecium TX0133a04] gi|314941986|ref|ZP_07848847.1| signal peptidase I [Enterococcus faecium TX0133C] gi|314948761|ref|ZP_07852133.1| signal peptidase I [Enterococcus faecium TX0082] gi|314951779|ref|ZP_07854818.1| signal peptidase I [Enterococcus faecium TX0133A] gi|314991814|ref|ZP_07857272.1| signal peptidase I [Enterococcus faecium TX0133B] gi|314995855|ref|ZP_07860942.1| signal peptidase I [Enterococcus faecium TX0133a01] gi|68195107|gb|EAN09567.1| Peptidase S24, S26A and S26B [Enterococcus faecium DO] gi|313589959|gb|EFR68804.1| signal peptidase I [Enterococcus faecium TX0133a01] gi|313593625|gb|EFR72470.1| signal peptidase I [Enterococcus faecium TX0133B] gi|313596058|gb|EFR74903.1| signal peptidase I [Enterococcus faecium TX0133A] gi|313599238|gb|EFR78083.1| signal peptidase I [Enterococcus faecium TX0133C] gi|313642603|gb|EFS07183.1| signal peptidase I [Enterococcus faecium TX0133a04] gi|313644827|gb|EFS09407.1| signal peptidase I [Enterococcus faecium TX0082] Length = 157 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 + SM + ++GD++++ ++ D ++ + G I K +I G Sbjct: 10 VPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIKRVIGLPG--------- 60 Query: 200 CCYPVDTVEMSDIEWIARIL 219 + + ++ +++ Sbjct: 61 ---ENVSYQNDQLKINGKVV 77 >gi|330467102|ref|YP_004404845.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810073|gb|AEB44245.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 476 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ H LT + LAR+ + + N+ + + P + K+L E Sbjct: 13 LRRLRREHGLTQAELARRLDISTSYLNQIEN--SQRTLTAPILLRLAKVLGVDPEHFAD 69 >gi|319948667|ref|ZP_08022789.1| transcriptional regulator [Dietzia cinnamea P4] gi|319437649|gb|EFV92647.1| transcriptional regulator [Dietzia cinnamea P4] Length = 176 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 5/82 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I E ++ LA +AG+ ++ +R R PS E + +I Sbjct: 61 QDIGSFIRAQREAAQVSIRQLAERAGVSNPYLSQIERG-----LRKPSAEVLGQIARGLR 115 Query: 67 ETICQLLDLPFSDGRTTEKKEK 88 + L + Sbjct: 116 LSAEVLYARAGILELKQGSPVR 137 >gi|311278398|ref|YP_003940629.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747593|gb|ADO47345.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 83 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 5/80 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E I + L+ A K G+D T + +R R P+ I I Sbjct: 9 KILGERIRTLRLDMGLSQEAFADKCGIDRTYMSGIERGV-----RNPTLIVICAISDGLE 63 Query: 67 ETICQLLDLPFSDGRTTEKK 86 + L E Sbjct: 64 MDLSHLFMFADGAHADNEAP 83 >gi|307324310|ref|ZP_07603518.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] gi|306890041|gb|EFN21019.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] Length = 279 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +I + + ER LT +A +AG+ T+ ++ + + R RW + +++ Sbjct: 2 QIARGLISLRERCGLTQVQVAERAGVSKTTVSRYEMWQDRARIRWATVKALADACE 57 >gi|221195133|ref|ZP_03568189.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221185036|gb|EEE17427.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 244 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 5/113 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S + + I R+ T LAR+ + P + +K + +P + ++ Sbjct: 4 SQETLGRRIARLRLAKAATQERLARELSVSPQAVSKWENDIN-----YPDISLLPQLAQF 58 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 +I +LL + R I S GN Sbjct: 59 LGVSIDELLRGASTQERKGLDVSMSITKEADESSDKREAGKEQNLAIGNFAEE 111 >gi|116250024|ref|YP_765862.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254672|emb|CAK05746.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 192 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 6/132 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I + + LT LA +G+ ++ +R P+ + + Sbjct: 5 MEPELEQAIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEA-----SPTASLLAR 59 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I AA ++ +++++ P+ V Sbjct: 60 ICAALGLSLS-AFFAEEGQASPLARRQEQQVWRDPETGYIRRSVSPPGTPSDVDIVEVEF 118 Query: 121 PEIRSPHNGIYA 132 P +A Sbjct: 119 PPGARVSFPPHA 130 >gi|309795403|ref|ZP_07689821.1| bacteriophage CI repressor protein [Escherichia coli MS 145-7] gi|308121053|gb|EFO58315.1| bacteriophage CI repressor protein [Escherichia coli MS 145-7] Length = 189 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 54/210 (25%), Gaps = 40/210 (19%) Query: 12 AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI+RM E + T L G+ ++ + R E + + T ++ Sbjct: 10 AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L S + E+ G + Sbjct: 63 NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPS 108 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + G ++ G+I + + Sbjct: 109 TFKKP------FVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 154 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ D+E I +I+ Sbjct: 155 GGRIFVEGGNRTF---ECKIEDVEIIGKII 181 >gi|163816452|ref|ZP_02207816.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC 27759] gi|158448152|gb|EDP25147.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC 27759] Length = 268 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I ++ N++ A K G+ + +K + +P + + I Sbjct: 3 QIGSRILEYRKKMNMSQEEFANKIGVSRQAVSKWELDKA-----YPDLDKLVDICGMFGL 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 ++ +L++ D + E+ + + P Sbjct: 58 SLDELVNGVEQDEEPVMEAEQRVEIPNDP 86 >gi|83311163|ref|YP_421427.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946004|dbj|BAE50868.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 93 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + R +R L+ + LA+K G + + + PS+ S+ + AAT Sbjct: 29 EIAETLIRARQRAGLSQAELAKKMGTTQSVVARLESGRS-----LPSSTSLARFAAATGS 83 Query: 68 TIC 70 + Sbjct: 84 RLH 86 >gi|320140814|gb|EFW32662.1| toxin-antitoxin system, antitoxin component, Xre family [Staphylococcus aureus subsp. aureus MRSA131] gi|320142985|gb|EFW34777.1| toxin-antitoxin system, antitoxin component, Xre family [Staphylococcus aureus subsp. aureus MRSA177] Length = 136 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 21/45 (46%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 ++ +I I + N++ S LAR+ G+ ++ ++ E Sbjct: 27 MRTNDEIITIIKTSMKEQNMSLSELARRVGVAKSAVSRYLNLTRE 71 >gi|297624714|ref|YP_003706148.1| XRE family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165894|gb|ADI15605.1| transcriptional regulator, XRE family [Truepera radiovictrix DSM 17093] Length = 93 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 6/65 (9%) Query: 3 SFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + K I+ + + L+ LA G++ + +R PS E F+ Sbjct: 1 MPTQKTTIYNRLAVLRAERGLSRQALADAVGVNYQTIGYLERGDYN-----PSLELAFRF 55 Query: 62 LAATN 66 Sbjct: 56 AKLFG 60 >gi|302873538|ref|YP_003842171.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307688282|ref|ZP_07630728.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302576395|gb|ADL50407.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 296 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I + + + T L+ G+ T+ ++ R P TE + K+ Sbjct: 2 NNSLANRIKDLRKNNGYTQKELSSLLGIGQTTVANYEQGT-----RIPDTEKLNKMADLF 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 T+ LL + ++ + + L Sbjct: 57 EVTLDYLLGRNEKISPSNKEVKSKTIDLKSAN 88 >gi|218670812|ref|ZP_03520483.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 96 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + H L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 4 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + + Sbjct: 59 GLAEFFAFEPERPKKAF 75 >gi|213966012|ref|ZP_03394201.1| DNA-binding protein [Corynebacterium amycolatum SK46] gi|213951307|gb|EEB62700.1| DNA-binding protein [Corynebacterium amycolatum SK46] Length = 478 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 13/131 (9%), Positives = 33/131 (25%), Gaps = 5/131 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S S + + ++ +L+ + LA+ GL + N+ + R + + +I Sbjct: 4 SMSKTYVGSRLRQLRRERDLSQAALAQALGLSASYVNQIEHDV-----RPLTVPVLLRIT 58 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 S + + P + V + Sbjct: 59 DTFGVDATFFSRDDDSRLLAEVQDVVMDKEIAKSPMDLQEISEMVRDHPDIARIMVDIHR 118 Query: 123 IRSPHNGIYAI 133 ++ Sbjct: 119 RYRNVTDKLSL 129 >gi|149916994|ref|ZP_01905495.1| transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149822272|gb|EDM81663.1| transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 130 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + E + L+ LA++AG+ + +K + + PS +++ KI A Sbjct: 7 RESLAEVVRGRRAELGLSQRELAKRAGVADATISKLETQQL-----SPSLDTLAKIAAGL 61 >gi|325961967|ref|YP_004239873.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468054|gb|ADX71739.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 191 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 10/135 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + T S LA G+ ++ ++ + R P+ E + + A Sbjct: 12 VGPRLRALRLSRETTLSALAEATGISVSTLSRLESGQ-----RRPNLELLLPLAKAHQVP 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +L+ P + + E ++ G + P G P++ Sbjct: 67 LDELVGAPATGDPRVHLRPIEAHGMTIVPLTRKPGGIQAYKHILPAGPLEE--PDPKVHE 124 Query: 126 PHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 125 GYEWLYVLNGKLRMV 139 >gi|310640587|ref|YP_003945345.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309245537|gb|ADO55104.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 115 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + + I + + L+ LA +AG + + +R R S +++ K Sbjct: 1 MSELL-ELVGTRIRDIRKSKGLSQEALAEQAGFNSSYIGFIERAE-----RNISLKNLEK 54 Query: 61 ILAATNETICQ 71 I A N + Q Sbjct: 55 IAKALNVGVYQ 65 >gi|226325758|ref|ZP_03801276.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] gi|225205882|gb|EEG88236.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] Length = 319 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI E + + + LT LA + + ++ + P + K+ N Sbjct: 4 KKIGEFLKVLRKERGLTQEQLAEILLVSGRTISRWETGTN-----MPDLSILIKMAEFYN 58 Query: 67 ETICQ 71 + + Sbjct: 59 VEVKE 63 >gi|225390137|ref|ZP_03759861.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] gi|225043790|gb|EEG54036.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] Length = 194 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + I + + LT LA + + +K +R +P + ++ Sbjct: 5 KIGKLIRALRKDQGLTQRQLAAAMNISEQAVSKWERGLG-----FPDVSLLPELSEVLGV 59 Query: 68 TI 69 + Sbjct: 60 SP 61 >gi|153839842|ref|ZP_01992509.1| LexA repressor [Vibrio parahaemolyticus AQ3810] gi|149746637|gb|EDM57625.1| LexA repressor [Vibrio parahaemolyticus AQ3810] Length = 154 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 32/181 (17%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +++++ I + + P + +AR+ G R+ + E Sbjct: 1 MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + + LL + G G G Sbjct: 46 HLKALAR------------KQAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 E + D + SM + GD+L ++ V G ++ + Sbjct: 94 AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVVVARV 153 Query: 176 R 176 Sbjct: 154 D 154 >gi|89096956|ref|ZP_01169847.1| dna-binding protein [Bacillus sp. NRRL B-14911] gi|89088336|gb|EAR67446.1| dna-binding protein [Bacillus sp. NRRL B-14911] Length = 69 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + L+ LA+ G+ + N + + PS F++ + T+ QL Sbjct: 5 IKEVRKSSGLSQEELAKACGVSRQTINAIENNKYD-----PSLALAFQLAESLGMTVDQL 59 Query: 73 LDLPFS 78 Sbjct: 60 FHFRSR 65 >gi|323357780|ref|YP_004224176.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274151|dbj|BAJ74296.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 211 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 41/145 (28%), Gaps = 13/145 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + ++ LA G+ P++ ++ +R ++ PS + I A Sbjct: 27 VGARIRDLRQARGISARALAATLGISPSAVSQIERGVMQ-----PSVSRLIAITDALGVP 81 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG----SGGFFDSGVFPTGNKWNTVG--VPE 122 + D + SG F + + P Sbjct: 82 LVAAFDPASDRPVEPVGPSGFTLQRAAQAADIVLESGVSFRRLTPGSSPGVDYFESVYPP 141 Query: 123 IRSPH--NGIYAIQTQDTRHKTQDT 145 S H +G++ + + Sbjct: 142 GASAHGADGLFHHEGYEVGTVVAGE 166 >gi|296877340|ref|ZP_06901380.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431860|gb|EFH17667.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 113 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + ++ +LT LA++ G+ +S+ +R + P+ E++ ++ N + Sbjct: 5 ERLKELRKQAHLTQVELAKQLGIGQSSYADWERG-----KKNPTQENLIRLAQILNVS 57 >gi|217967677|ref|YP_002353183.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336776|gb|ACK42569.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 110 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I E + + E+ LT LA K G+ P++ + + G R P + +I + Sbjct: 8 KIISERLKEVREKRGLTKKELALKIGVSPSTITRYEEEG-----RVPKLTILKRISEVLD 62 Query: 67 ET 68 + Sbjct: 63 VS 64 >gi|168260202|ref|ZP_02682175.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350640|gb|EDZ37271.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|326623288|gb|EGE29633.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 178 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I N + P ++ T +++ ++ Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 87 >gi|15614006|ref|NP_242309.1| transcriptional regulator [Bacillus halodurans C-125] gi|10174060|dbj|BAB05162.1| transcriptional regulator [Bacillus halodurans C-125] Length = 107 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 5/101 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++H LT L +K + ++ + + R P +++ K+ N + Sbjct: 4 ERLRYLRKKHGLTMKELGKKINVAESTISGYENGN-----RKPDMDTLVKMAEYFNSSTD 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 LL ++ ++ L + F Sbjct: 59 YLLGRTEEPAPYQKQPPEKQFLYSETVTDEEVEFLRESLAV 99 >gi|145220707|ref|YP_001131385.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442341|ref|YP_004075220.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] gi|145213193|gb|ABP42597.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315260644|gb|ADT97385.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] Length = 182 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I E ++ LA KAG+ ++ +R R PS + + +I A Sbjct: 19 QDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRKPSADVLNQIAKALR 73 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL 92 + L + ++ + Sbjct: 74 VSAEVLYIQAGILEPGDTNEVRDAII 99 >gi|302672095|ref|YP_003832055.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396568|gb|ADL35473.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 346 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 16/176 (9%), Positives = 39/176 (22%), Gaps = 19/176 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + N++ LA G+ + + + R P E I K+ + Sbjct: 4 KNLKYYRLKKNMSMKDLADAVGVTSMAISNYESG-----KRQPEIEIINKMAEVLGIKVV 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L S + ++ L F + Sbjct: 59 DFLASRNSHLEIKHCEFRKHSTLTKTQQEFIRESVEEYFS-------RFFDALDCLCGDP 111 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-------NCGDRLLIKPRTGD 179 + + + + L L + ++ + D Sbjct: 112 LPTPPKCYTLELSGSYQQDALNLREHLGLPKEGPIDELIGILENKGIIVFELDIDD 167 >gi|284992987|ref|YP_003411541.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066232|gb|ADB77170.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 170 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 5/82 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ E I ++ LAR AG+ ++ +R R PS E + I Sbjct: 40 TGSQVGEFIREQRSAARVSLRELARTAGVSNPYLSQVERG-----LRKPSAEILAAIAKG 94 Query: 65 TNETICQLLDLPFSDGRTTEKK 86 + L + R Sbjct: 95 LKISAETLYEQAGILDRRDGNP 116 >gi|222530443|ref|YP_002574325.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457290|gb|ACM61552.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 67 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + + LA+ G+ + ++ + PS + I +I I Sbjct: 4 GKKIKELRKLKGFSQKELAKLTGVSQSYISELEAGIKT----NPSIKVIKRIAEVLEIDI 59 Query: 70 CQ 71 CQ Sbjct: 60 CQ 61 >gi|297202323|ref|ZP_06919720.1| signal peptidase [Streptomyces sviceus ATCC 29083] gi|197710157|gb|EDY54191.1| signal peptidase [Streptomyces sviceus ATCC 29083] Length = 145 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179 PE+ + + SM+P R GD L+++ +V GD ++++ Sbjct: 2 PELSQETERGRPLLPFVGVAEVTGPSMVPTLRHGDQLVVHWGARVVPGDIVVLRHPFQQD 61 Query: 180 -IVAKVLISRRGRSIDLMSLN 199 +V K + RR ++ N Sbjct: 62 LLVVKRAVERREGGWWVLGDN 82 >gi|164687559|ref|ZP_02211587.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] gi|164603333|gb|EDQ96798.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] Length = 139 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + L+ LA + + + +K ++ P + + KI ++ Sbjct: 4 ENLKQLRKSKGLSQEELAIRLNVVRQTISKWEKGLSV-----PDADMLIKIADIFEVSVS 58 Query: 71 Q 71 + Sbjct: 59 E 59 >gi|160878668|ref|YP_001557636.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427334|gb|ABX40897.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 114 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++ ++H LT S LA GL PT+ + + R PS E + + + + Sbjct: 6 RLKQLRQKHKLTQSELAEILGLKPTAVSNYES-----RRNEPSFEKLIALSRYFDVS 57 >gi|332534116|ref|ZP_08409964.1| hypothetical protein PH505_bb00220 [Pseudoalteromonas haloplanktis ANT/505] gi|332036405|gb|EGI72874.1| hypothetical protein PH505_bb00220 [Pseudoalteromonas haloplanktis ANT/505] Length = 208 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 54/216 (25%), Gaps = 36/216 (16%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + L+ A K G+ + + + + + K + E + Sbjct: 18 ERMRKARINAGLSQREAAEKIGVGQSRVSNYENEINKNVPPEF-LKLCAKAYNCSLEYLY 76 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 D + + + Sbjct: 77 GFTDEIEGGYAYRPINKDSVIAINKRELAKQNLTF------------------------- 111 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190 D++ML + KG+ ++++ + V + G V + L Sbjct: 112 ----QDLDEITVTDSAMLDAFTKGEQIVISKKVGVISKPAIYAITYGGTTVMRGLRKELN 167 Query: 191 RSIDLMSLNC-CYPVDTVEMSDIE---WIARIL--W 220 L N Y T+ +++ I + + W Sbjct: 168 GVYTLFVHNKQNYDDQTLTEDELKNLTIIGKYIGHW 203 >gi|325168260|ref|YP_004277301.1| XRE family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325052939|dbj|BAJ83272.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 73 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ ++ + ++ T LA GL PT +R R +++ K Sbjct: 1 MSLTDKQRFGRKVKQLRLAKGWTQEELAEHTGLHPTYIGGVERGE-----RNLGLDNLLK 55 Query: 61 ILAATNETI 69 I A E Sbjct: 56 IARALGEPP 64 >gi|291458798|ref|ZP_06598188.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418594|gb|EFE92313.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 97 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I ++ R + LT + L+ K G+ ++ + R PS + +I Sbjct: 27 ERDITMSLIRARKEAGLTQAELSEKTGISQADISRLENGT-----RNPSLALLNRIAE 79 >gi|268591417|ref|ZP_06125638.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] gi|291313069|gb|EFE53522.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] Length = 185 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 3/148 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + KI + I + + +L+ + L+R +G+ + +K + R + ESI Sbjct: 1 MDKKINIKIGQKIRLLRQARDLSLNELSRISGISKAALSKLESGDSN--PRIDTLESIAI 58 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L + + EKE + G + + Sbjct: 59 ALRFPLSDLFTRQHEAYPYFLKATPSEKEYSQQFKFRISMGNISEIWQLTMKRGAI-INS 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML 148 P S + + + + + + Sbjct: 118 PAHMSGTHEHIMVNSGSLMLRLHNDQNI 145 >gi|225376377|ref|ZP_03753598.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] gi|225211753|gb|EEG94107.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] Length = 380 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 12/109 (11%), Positives = 27/109 (24%), Gaps = 7/109 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +++ + LA K G+ S +K + G P + I K+ T Sbjct: 51 LADKIINLRKKNGWSQEELAEKLGVTRQSISKYE-----GAQSIPDLDKILKLSEIFGVT 105 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + + Sbjct: 106 T--DYLIKDELEEEEYASSQMQENESESDRSVHKVTMEMANEYLQIIDW 152 >gi|59711876|ref|YP_204652.1| DNA polymerase V, subunit D [Vibrio fischeri ES114] gi|197334590|ref|YP_002156066.1| DNA polymerase V subunit [Vibrio fischeri MJ11] gi|59479977|gb|AAW85764.1| DNA polymerase V, subunit D [Vibrio fischeri ES114] gi|197316080|gb|ACH65527.1| DNA polymerase V subunit [Vibrio fischeri MJ11] Length = 135 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 11/123 (8%) Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 + + P + + + SM + GD+ Sbjct: 1 MNVIPLHASAGISGFESPAAEYSQLSFDLDELLIEHPSSTFIGRASGDSMQGVGIFDGDL 60 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 LI++ + V D ++ G+ V K+L R + L+S N Y + D I Sbjct: 61 LIVDRYVTVQSNDVIVANFN-GEFVCKIL--DTQRRL-LVSANERYQTVPINDYDTFTIE 116 Query: 217 RIL 219 ++ Sbjct: 117 GVV 119 >gi|237797306|ref|ZP_04585767.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020156|gb|EGI00213.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 182 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + L+ LAR++G+ + + ++ + PS S+ K+L T+ Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58 Query: 70 CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 G+ + + + PS F P ++ Sbjct: 59 ADFFTFDQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAP---GADS 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P + S + + GD Sbjct: 116 GEEPIVHSEGEECGLVTRGTVELTINGQVNILG----------------PGDGYYFPTTL 159 Query: 178 GDIVAKVLISRRGRSIDLMSLN 199 + +++S N Sbjct: 160 PH----RFRNIGQDEAEIVSAN 177 >gi|332162055|ref|YP_004298632.1| putative UV protection and mutation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606098|emb|CBY27596.1| error-prone repair protein UmuD [Yersinia enterocolitica subsp. palearctica Y11] gi|325666285|gb|ADZ42929.1| putative UV protection and mutation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 118 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 8/109 (7%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS-MLPLYRKGDILILNSAIQVNCGDRL 171 + + + + + S + G +L+++ ++ GD + Sbjct: 7 AAQDYIE--KRIDINEHCIVHPAATFFMTAEGESLIEAGIHHGALLVIDRSLPAKHGDIV 64 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218 + G+ K L R + L +LN P + D+ I Sbjct: 65 V-ATIGGEFSIKRLYLRP--TPRLEALNAGTPALILCEGDEDLVIFGVI 110 >gi|297192149|ref|ZP_06909547.1| signal peptidase [Streptomyces pristinaespiralis ATCC 25486] gi|297151237|gb|EDY64114.2| signal peptidase [Streptomyces pristinaespiralis ATCC 25486] Length = 139 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198 + SM+P GD L+++ + GD +++ + ++ K L RR ++ Sbjct: 16 EVTGPSMVPTLLHGDQLLVDYRASLRVGDVAVLRHPLQQDLLIVKRLAERRDGGWWVLGD 75 Query: 199 NC 200 N Sbjct: 76 NP 77 >gi|271498957|ref|YP_003331982.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270342512|gb|ACZ75277.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 195 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 10/162 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESI 58 + +++ E + + + + L++++G+ + ++ +R GR ++ Sbjct: 14 TDRRLAERLAALRRERDWSLDELSQRSGISRATLSRLERMASSPTAVLLGRLCAVYGCTM 73 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +LA + Q L + + ++ +G G P G + + Sbjct: 74 SGLLAEVELPLPQKLSVTQQPVWVDPETGFIRRVVSPSSAGFRAEMIHGELPAGARIDYN 133 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 P + + +Y + Q ++ D L Sbjct: 134 A-PPLAGLEHHLYVLDGQ---LTITLEGVIHTLGPQDSLRYR 171 >gi|255525754|ref|ZP_05392685.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296188039|ref|ZP_06856431.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] gi|255510577|gb|EET86886.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296047165|gb|EFG86607.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] Length = 140 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 4/89 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + + L+ LA + T ++ + + PS + I + Sbjct: 4 GEFLKNLRKEKGLSQRQLADLCNISNTEISRIESGERQK----PSPNILKAIAPHLEISY 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 +L+ T + ++ + Sbjct: 60 GELMTKAGYIEETIDHEKYTELIFRTEDG 88 >gi|223937259|ref|ZP_03629165.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223894044|gb|EEF60499.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 73 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 5 SHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H+++ EA+ + + LA KA L ++ +R P+ +++ KI Sbjct: 6 KHRRLLGEAVRAKRKEAGFSQEKLAEKADLSAVFVSRIERG-----KESPTLDNLVKIAK 60 Query: 64 ATNETICQ 71 A + Sbjct: 61 ALGTHVRD 68 >gi|75908414|ref|YP_322710.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702139|gb|ABA21815.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 83 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + +AI R + + LA KAGL + + R PS ++I K+ A N Sbjct: 11 RFGKAIRRRRRELDYSQEELAEKAGLHRNYISSIETGT-----RNPSLKNIEKLAKALNI 65 Query: 68 TICQLLDLPF 77 +I L Sbjct: 66 SISDLFTNYG 75 >gi|125974946|ref|YP_001038856.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125715171|gb|ABN53663.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 79 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 6/76 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I NLT LA G+D T+ +K + PS S KI Sbjct: 9 EVRELIKEKRAALNLTQKQLADLVGVDRTTISKIENGIR------PSVNSAKKIAQILGL 62 Query: 68 TICQLLDLPFSDGRTT 83 D T Sbjct: 63 DWTIFFDSDEEHQTET 78 >gi|300785112|ref|YP_003765403.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794626|gb|ADJ45001.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 7/144 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + +T + +A G+ ++ ++ + R E + + A + Sbjct: 12 VGPRLRALRRHRGMTLADVAAATGVSESTLSRLESGQ-----RRAGLELLLPLARAYDVP 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP--EIRSP 126 + L+ P + + F P + VP +I Sbjct: 67 LDDLVGAPRTGDPRIHLTPIHRHGMTFVPLSRRPGGMQAYKMIIPSADRPPVPHHQIHEG 126 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL 150 H +Y + + +LP Sbjct: 127 HEWLYVLHGNLRLVLGEHDLVLPA 150 >gi|295110461|emb|CBL24414.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 315 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + + NLT LA K G+ + ++ + P + ++ + Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGTN-----LPDLSILVELAEYYD 58 Query: 67 ETICQ 71 + + Sbjct: 59 VEMRE 63 >gi|291560642|emb|CBL39442.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 138 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 6/136 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I + ++ LT LA K G+ S ++ G R P +I I Sbjct: 1 MNENNLGGRIADLLKKSGLTQRELANKVGVTEASMSRYISGG-----RIPKGPTIANIAN 55 Query: 64 ATNETICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + T LL + + + + P Sbjct: 56 ALHTTSDYLLGTEEDITKEQKTIAGIAGAVKEDREKSKTVTDILEEVKQEICDDYCKYPT 115 Query: 123 IRSPHNGIYAIQTQDT 138 I + ++A + Sbjct: 116 IVNDREDLFADDSPCM 131 >gi|260768699|ref|ZP_05877633.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] gi|260616729|gb|EEX41914.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] Length = 184 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 53/192 (27%), Gaps = 17/192 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I ++ + H L+ LA KA + ++ + + + PS S+ KI+ N Sbjct: 4 DSIGQKIAQLRKEHKLSQRELAEKANITHSAISSIENNKV-----SPSVSSLHKIVKVFN 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + E + S G + Sbjct: 59 LSLSEFFTQDQEIDDRPVVIAPEQLIEIGNERVSMRLVCDGRDKRRMGFLIECFQPHTDT 118 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + ++ T + + + + + G+ V Sbjct: 119 GVISIKHEGEE-----SGTVLEGEIE---LTLGDKTYVIREGE----CYLFDTNVPHKFT 166 Query: 187 SRRGRSIDLMSL 198 ++ R ++S Sbjct: 167 NKTDRVCRIISA 178 >gi|229017114|ref|ZP_04174030.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] gi|229023292|ref|ZP_04179801.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228737997|gb|EEL88484.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228744173|gb|EEL94259.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] Length = 181 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 8/138 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K++K I S F + + +P + Sbjct: 63 SFLLEETNTDDLIVRSHKRKKMIIDNLSYELLSPDFTGNLATAI------MTIPPNTASS 116 Query: 128 NGIYAIQTQDTRHKTQDT 145 + + ++ Sbjct: 117 ENVLEHKGEELAFVLDGE 134 >gi|226313174|ref|YP_002773068.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226096122|dbj|BAH44564.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 120 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + I ++ + +N T A + + P + +R PS E I +I N Sbjct: 5 ETVGQRIRKLRKANNWTQEQFANRVNVSPQKVSNWERDYT-----SPSVEDIARIAQICN 59 >gi|295836548|ref|ZP_06823481.1| signal peptidase [Streptomyces sp. SPB74] gi|295826090|gb|EDY44256.2| signal peptidase [Streptomyces sp. SPB74] Length = 187 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198 + + SMLP R GD L++ +V GD ++++ ++ K RRG +++ Sbjct: 21 EVRGPSMLPTLRHGDRLLVRYGARVRPGDVVVLRHPFQQDLLIVKRAAERRGAGWWVLAD 80 Query: 199 NC----CYPVDTVEMSDIEWIARIL 219 N V ++ + R+L Sbjct: 81 NPWAGGDSNDYGVVPREL-VLGRVL 104 >gi|162453255|ref|YP_001615622.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161163837|emb|CAN95142.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 186 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I ++ E LT LA+ AG+ ++ + P+ + + AA Sbjct: 10 RLAKNIKQLREARGLTQQQLAKLAGVPRATWAHLESGAAN-----PTLGVLHRAAAALQV 64 Query: 68 TICQLLDLPFSDGR 81 +I ++L P + + Sbjct: 65 SIEEMLSAPRATCQ 78 >gi|153002766|ref|YP_001368447.1| putative prophage repressor [Shewanella baltica OS185] gi|160877509|ref|YP_001556825.1| peptidase S24/S26 domain-containing protein [Shewanella baltica OS195] gi|151367384|gb|ABS10384.1| putative prophage repressor [Shewanella baltica OS185] gi|160863031|gb|ABX51565.1| peptidase S24 and S26 domain protein [Shewanella baltica OS195] gi|315269708|gb|ADT96561.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica OS678] Length = 135 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 12/120 (10%) Query: 108 VFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 P S + + + SM + GD+LI++ Sbjct: 5 PIHASAGITGFESPAAEYGQLGLSLDELLVVHPSATFIGIAKGDSMQGVGIFYGDLLIVD 64 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 GD ++ G+ V K+L + L+S N + + + + ++ Sbjct: 65 RQETARHGDVIVANFN-GEFVCKILDKK---HRMLLSSNEQHQPQPIHDYDNFTIEGVVI 120 >gi|71910858|ref|YP_282408.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|71853640|gb|AAZ51663.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] Length = 66 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 AI R+ E ++ LA K+G+ T+ + + ++ ++ K+ A + I Sbjct: 5 AIQRLREEKKMSQEELANKSGVSRTTISLIE----TDKSTTVKLSTLQKLAVALDVPIGY 60 Query: 72 LLDLP 76 Sbjct: 61 FFKHN 65 >gi|329941606|ref|ZP_08290871.1| regulatory protein [Streptomyces griseoaurantiacus M045] gi|329299323|gb|EGG43223.1| regulatory protein [Streptomyces griseoaurantiacus M045] Length = 229 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 5/133 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ + T + L+ G+ ++ ++ + R PS E + I A Sbjct: 47 EVGPRLRRIRKERGATLAALSEATGISVSTLSRLESG-----LRKPSLELLLPIARAHQV 101 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P + + P + + P + Sbjct: 102 PLDELVGAPRVGDPRVRAEPIARFGRTYWPLTRQPGGLQAFKVLEPQRASEPHPRTHEGY 161 Query: 128 NGIYAIQTQDTRH 140 +Y + + Sbjct: 162 EWLYVMSGKLRLV 174 >gi|325526296|gb|EGD03907.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 132 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ AI LT + LA L+ + ++ +R R P+ + ++ A + Sbjct: 20 RVGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGT-----RMPTLHRLQQLSDALDC 74 Query: 68 TICQ 71 ++ Q Sbjct: 75 SVDQ 78 >gi|325696215|gb|EGD38106.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 180 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 I + ++ L+ LA+K G+ + + + + Sbjct: 1 MNRIKEIRQKEGLSQQALAKKIGVSYRTIQNWENGVNQIKP 41 >gi|313898798|ref|ZP_07832332.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956380|gb|EFR38014.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + + LA K G++ S +K +R +P+ +++ KI+ + T Sbjct: 6 LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLN-----YPAYDTLEKIMEVLDVT 60 Query: 69 ICQLLDLPFSDGRTTEKKE 87 +LL + EK+ Sbjct: 61 PNELLSGEWKYINQAEKEV 79 >gi|209966373|ref|YP_002299288.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209959839|gb|ACJ00476.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 101 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 M + K + AI R L+ LA KAG+ +GR R Sbjct: 1 MRVLTPKDLGTAIGRRRRALGLSQRALAEKAGVSR----DWLIGLEQGRPR 47 >gi|160944131|ref|ZP_02091361.1| hypothetical protein FAEPRAM212_01633 [Faecalibacterium prausnitzii M21/2] gi|158444807|gb|EDP21811.1| hypothetical protein FAEPRAM212_01633 [Faecalibacterium prausnitzii M21/2] gi|295105048|emb|CBL02592.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 101 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I R+ E L+ + LARK G+ S N + P+ + + + + T Sbjct: 2 ISDNIKRLRENTGLSQAALARKLGVTRASVNAWE-----MELSAPTAQYLIALAQLFHTT 56 Query: 69 ICQ 71 Sbjct: 57 TDD 59 >gi|114563134|ref|YP_750647.1| putative prophage repressor [Shewanella frigidimarina NCIMB 400] gi|114334427|gb|ABI71809.1| putative prophage repressor [Shewanella frigidimarina NCIMB 400] Length = 137 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 12/124 (9%) Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 P S + + Q SM + GD+ Sbjct: 1 MRVIPIAASAGITGFESPAAEYLQLGLSLDEILIQHPSSTFIGLAQGESMQGVGIYDGDL 60 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWI 215 LI++ GD ++ G+ V K+L R LMS N + T+ + D Sbjct: 61 LIVDRHETARNGDVIVANFN-GEFVCKILDMHRR---MLMSSNEQHLPVTICDYDDFSIE 116 Query: 216 ARIL 219 ++ Sbjct: 117 GVVI 120 >gi|99078239|ref|YP_611497.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99035377|gb|ABF62235.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 190 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 5/78 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + E+ NL+ LA+K G+ ++ + + + PS ++ +IL Sbjct: 11 EDLGPRLRSVREKANLSQRALAKKTGVPNSTISLIESGKMN-----PSVGALRRILDGIP 65 Query: 67 ETICQLLDLPFSDGRTTE 84 ++ + + Sbjct: 66 ISLSDFFAFEPETEKASF 83 >gi|257055531|ref|YP_003133363.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256585403|gb|ACU96536.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 184 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ R + L+ + LAR+AG+ ++ ++ + PS E+I+ + A + Sbjct: 10 IAASLQRERRKAGLSLAELARRAGIAKSTLSQLESGSGN-----PSVETIWALSTALGVS 64 Query: 69 ICQ 71 Q Sbjct: 65 FSQ 67 >gi|255524707|ref|ZP_05391659.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185668|ref|ZP_06854077.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] gi|255511601|gb|EET87889.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049796|gb|EFG89221.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] Length = 120 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ + + LA K G+ + +K + P +I K+ N + Sbjct: 3 ISERLQKLRKDERYSQEQLAEKLGVTRQAISKWESNQGN-----PDINNIIKLSEIYNVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91 LL + E KE Sbjct: 58 TDYLLKGEEQISKPIEIDSKENK 80 >gi|251795933|ref|YP_003010664.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543559|gb|ACT00578.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 231 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + R ++ LA +AGLD + + +R R S +I KI +A + Sbjct: 8 GQRIKELRARSGMSQEHLAYRAGLDRSYISGVERGE-----RNVSIINIEKIASALQIGV 62 Query: 70 CQLLDLPFSDGRTTEKK 86 L + + Sbjct: 63 AYLFSGERFSPKQAYQP 79 >gi|310658782|ref|YP_003936503.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825560|emb|CBH21598.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 179 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 44/215 (20%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ +NLT LA + L +K +R PS ++ IL A Sbjct: 3 IGEKIKRLRILNNLTQEELALRCDLTKGFISKLERDLT-----SPSIATLVDILEALGTD 57 Query: 69 ICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + ++ ++ + + +S + PE S Sbjct: 58 LKDFFNESSNNKIVFGKEDIYDAYYEHNKSKIHWLIPNSQKNSMEPILIEIE-PEGISEL 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + + K G +L+ K Sbjct: 117 DRPHPGEEFGYVLK--------------------------GSIILVVGN------KKYKV 144 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 ++G S Y + S A I+W S Sbjct: 145 KKGESFYFTPDKEHY---IINNSTTN--AEIIWVS 174 >gi|229541996|ref|ZP_04431056.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326416|gb|EEN92091.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 189 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 9/113 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + I + + LT L + L ++ +R PS ++ F IL Sbjct: 11 KIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLS-----SPSIDTFFNILEVLGC 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 T + D + + +E + L G+ + P N+ + Sbjct: 66 TPKEFFDEEEREQKVVYGEEDQTDYL----DEERGYKIQWLVPESNEKEMEPI 114 >gi|229059476|ref|ZP_04196859.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228719842|gb|EEL71434.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|254515458|ref|ZP_05127518.1| conserved domain protein [gamma proteobacterium NOR5-3] gi|219675180|gb|EED31546.1| conserved domain protein [gamma proteobacterium NOR5-3] Length = 394 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 6/122 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + + ++ A GLD + ++ + ++ + +I+K+ A N Sbjct: 8 VGERLTQARKARGVSAGDFADMVGLDRVTISRYETGKMDPKP-----STIYKMAEALNFP 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPH 127 S + + + P++ P Sbjct: 63 TGYFSRELNSREGSGPLFWRARLTAPVKMRERTAVRLEWLEDIIEFLEEYFDFPDMNLPD 122 Query: 128 NG 129 G Sbjct: 123 LG 124 >gi|205352715|ref|YP_002226516.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856901|ref|YP_002243552.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272496|emb|CAR37385.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708704|emb|CAR33030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627783|gb|EGE34126.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 178 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 55 IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHKAGVVEH 124 >gi|254385813|ref|ZP_05001133.1| transcriptional regulatory protein [Streptomyces sp. Mg1] gi|194344678|gb|EDX25644.1| transcriptional regulatory protein [Streptomyces sp. Mg1] Length = 192 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 7/142 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + R LT GLA +AGL + ++ PS E++ K Sbjct: 3 MDQLSQ-SLARNLKHWRTRRGLTLDGLAARAGLSRGMVIQVEQARTN-----PSLETMVK 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A + LLDL + + + + SGS +G G + Sbjct: 57 LADALGVDMTALLDLNQEPHVRITPPGRAVRV-WSTDSGSFSTLLTGRCNQGAIELWLWR 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKT 142 E Sbjct: 116 LEPGEMSESSPHPPGTTELLHV 137 >gi|167756656|ref|ZP_02428783.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402] gi|237733944|ref|ZP_04564425.1| predicted protein [Mollicutes bacterium D7] gi|167702831|gb|EDS17410.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402] gi|229383025|gb|EEO33116.1| predicted protein [Coprobacillus sp. D7] Length = 139 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 1/105 (0%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + S L + GL +S + + G + S S+ KI A + Sbjct: 9 IGKYIKSTRLSKGWSQSKLEKITGLSASSISNIELGNR-GVSYNISLPSLVKIAHAFEMS 67 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + LL ++ + + + + P Sbjct: 68 LVDLLSQSGYLSAIGDECYEAEKSQIYIHNYELINIYHRLTPIQQ 112 >gi|163939634|ref|YP_001644518.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132657|ref|ZP_04261504.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] gi|229166679|ref|ZP_04294429.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|163861831|gb|ABY42890.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228616676|gb|EEK73751.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228650784|gb|EEL06772.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] Length = 181 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|225376313|ref|ZP_03753534.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] gi|225211689|gb|EEG94043.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] Length = 110 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 5/95 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K I I + + +T +A ++P+ + + PS ++ K Sbjct: 1 MADLDFKVIGLKIKQRRQELGITQEYIANALDVNPSHISNIECGRAN-----PSLTALIK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 I + ++ + ++ +++ + Sbjct: 56 IANILSCSVDYFISDEYTFEINKNREKTLDDKIID 90 >gi|239828402|ref|YP_002951026.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239808695|gb|ACS25760.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 97 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ++ N++ LA + G+ ++ + + P E++FKI A N Sbjct: 26 IAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLT-----SPRVETLFKISQALNTP 80 Query: 69 ICQLLDLPFSDGRTTE 84 + Sbjct: 81 FIIDGTSRQDHNLHVQ 96 >gi|166030939|ref|ZP_02233768.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] gi|166029206|gb|EDR47963.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] Length = 179 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + LT LA ++ L ++ +R PS ++ IL Sbjct: 2 DIGKKIKELRVAKGLTQEELADRSELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 T+ + D + ++ + Sbjct: 57 TVSEFFQEEPEDQIVFQNEDYFEKI 81 >gi|75676148|ref|YP_318569.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74421018|gb|ABA05217.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 410 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 5/75 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + + ER L+ +A GL T+ + R ST + ++ Sbjct: 1 MIDAAQLGDRLRAARERRGLSQQAVAEALGLPRTAVTNMESGT-----RSVSTLELTRLA 55 Query: 63 AATNETICQLLDLPF 77 + L + Sbjct: 56 DLYGQQATFFLSMHE 70 >gi|167036464|ref|YP_001664042.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114890|ref|YP_004185049.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855298|gb|ABY93706.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927981|gb|ADV78666.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 69 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ LT LA+ G+ P ++ +R R P E+ KI N T+ ++ Sbjct: 4 LKELRIKYKLTQKELAKNLGVTPDYISQIERG------RIPGMETAIKIANFFNTTVDEI 57 Query: 73 L 73 Sbjct: 58 F 58 >gi|325677942|ref|ZP_08157584.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324110496|gb|EGC04670.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 196 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 1 MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M FS I + I R+ E ++ + G+ + + + R PS + Sbjct: 128 MQEFSGNSMIGKRIVRLREESGMSRQDFIKAMGVSAQTVYRWENGE-----RIPSMATYM 182 Query: 60 KILAATN 66 KI+ Sbjct: 183 KIMQVLG 189 >gi|260684687|ref|YP_003215972.1| putative phage DNA-binding protein [Clostridium difficile CD196] gi|260688345|ref|YP_003219479.1| putative phage DNA-binding protein [Clostridium difficile R20291] gi|260210850|emb|CBA65947.1| putative phage DNA-binding protein [Clostridium difficile CD196] gi|260214362|emb|CBE06743.1| putative phage DNA-binding protein [Clostridium difficile R20291] Length = 280 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 54/181 (29%), Gaps = 14/181 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + ++ ++ LT LA +G+ + + R PS +++ K+ A Sbjct: 28 QIGKNLKKIRKQKELTQIQLAEISGISRNALINYEND-----KRIPSIDTLSKLAKALKI 82 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + E + L FD + N + S Sbjct: 83 EKTIFYFDIEN---EVMTNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLL 139 Query: 128 NGIYAIQTQDT----RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 G ++ + Q + + + + + ++ D + D++ K Sbjct: 140 LGAWSDKDQYYKLGEKLELNENQVYNWILSDCVSNTELDFSLHPDDI--KEIIKNDVLIK 197 Query: 184 V 184 Sbjct: 198 Q 198 >gi|307244113|ref|ZP_07526231.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492484|gb|EFM64519.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] Length = 179 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 15/139 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + R+ LT LA + L ++ + PS ++ IL Sbjct: 2 EIGEKLRRLRTEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLIDILEILGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-----PE 122 + ++ T ++ G+ + P K++ V P Sbjct: 57 NLRDFFADEVNEKVTF-----AEDDMFETYDEDLGYQFKWLVPNSQKYDMEPVLVNIEPG 111 Query: 123 IRSPHNGIYAIQTQDTRHK 141 + + K Sbjct: 112 GSYKEEKPHEGEEFGFVLK 130 >gi|302535844|ref|ZP_07288186.1| DNA-binding protein [Streptomyces sp. C] gi|302444739|gb|EFL16555.1| DNA-binding protein [Streptomyces sp. C] Length = 145 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + + L+ LA AG+ ++ +R R PS + + + Sbjct: 7 MASLNVGNLGEYLREQRRQAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSADILQQ 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L + + ++ Sbjct: 62 LAKALRISAETLYVQAGILDERDRDEVETRAVI 94 >gi|239834303|ref|ZP_04682631.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239822366|gb|EEQ93935.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 470 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 4 FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI+ I R+ LT + +A G+ P+ N +R R + + + K+ Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55 Query: 62 L 62 Sbjct: 56 A 56 >gi|239503877|ref|ZP_04663187.1| Helix-turn-helix family protein [Acinetobacter baumannii AB900] Length = 182 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 70/194 (36%), Gaps = 21/194 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L++ P + + + + + + + P Sbjct: 61 IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + + + +++ +++ A++++ GD + K + Sbjct: 120 LSEPHPVGSVEHIIVVEGRALVG--------LIDEAVELDVGDYICYPADQ-----KHIF 166 Query: 187 S--RRGRSIDLMSL 198 G L+S Sbjct: 167 RALETGTKALLISE 180 >gi|227551187|ref|ZP_03981236.1| signal peptidase I [Enterococcus faecium TX1330] gi|227179655|gb|EEI60627.1| signal peptidase I [Enterococcus faecium TX1330] Length = 157 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199 + SM + ++GD++++ ++ D ++ + G I K +I G Sbjct: 10 VPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIKRVIGLPG--------- 60 Query: 200 CCYPVDTVEMSDIEWIARIL 219 + + ++ +++ Sbjct: 61 ---ENVSYQNDQLKINGKVV 77 >gi|254976735|ref|ZP_05273207.1| putative phage DNA-binding protein [Clostridium difficile QCD-66c26] gi|255094119|ref|ZP_05323597.1| putative phage DNA-binding protein [Clostridium difficile CIP 107932] gi|255315870|ref|ZP_05357453.1| putative phage DNA-binding protein [Clostridium difficile QCD-76w55] gi|255518531|ref|ZP_05386207.1| putative phage DNA-binding protein [Clostridium difficile QCD-97b34] gi|255651650|ref|ZP_05398552.1| putative phage DNA-binding protein [Clostridium difficile QCD-37x79] Length = 254 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 54/181 (29%), Gaps = 14/181 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + ++ ++ LT LA +G+ + + R PS +++ K+ A Sbjct: 2 QIGKNLKKIRKQKELTQIQLAEISGISRNALINYEND-----KRIPSIDTLSKLAKALKI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + E + L FD + N + S Sbjct: 57 EKTIFYFDIEN---EVMTNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLL 113 Query: 128 NGIYAIQTQDT----RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 G ++ + Q + + + + + ++ D + D++ K Sbjct: 114 LGAWSDKDQYYKLGEKLELNENQVYNWILSDCVSNTELDFSLHPDDI--KEIIKNDVLIK 171 Query: 184 V 184 Sbjct: 172 Q 172 >gi|145294858|ref|YP_001137679.1| hypothetical protein cgR_0805 [Corynebacterium glutamicum R] gi|140844778|dbj|BAF53777.1| hypothetical protein [Corynebacterium glutamicum R] Length = 124 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 1/92 (1%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNETI 69 + ++ + LA +G+ + + +R +G P +I+++ A + Sbjct: 15 SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 74 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 L+ E + +P Sbjct: 75 IVLMPAGSVPVAKICVDETAAIDVRWPSEKDP 106 >gi|332653867|ref|ZP_08419611.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516953|gb|EGJ46558.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 87 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + L+ S LA AG+ + +R + ++ KI A + Sbjct: 12 EGLQKLRKAAGLSQSQLADLAGIKVQVLQQYERGARD--INGAKLPTLLKICNALECRLA 69 Query: 71 QLLDLPF 77 ++ Sbjct: 70 DIITDEE 76 >gi|296876191|ref|ZP_06900245.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|312867365|ref|ZP_07727574.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|319946640|ref|ZP_08020874.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|322389882|ref|ZP_08063423.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|296432902|gb|EFH18695.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|311097066|gb|EFQ55301.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|319746688|gb|EFV98947.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|321143463|gb|EFX38900.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 69 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + + R L S LA+ AG+ S + +R Sbjct: 3 LKNRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTP 42 >gi|228474268|ref|ZP_04059003.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|314936712|ref|ZP_07844059.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] gi|228271627|gb|EEK12974.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|313655331|gb|EFS19076.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] Length = 179 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 13/141 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + NLT LA + L ++ + PS E+ IL Sbjct: 2 QIGYKLKNLRRQKNLTQEELAERTDLSKGYISQIESEYA-----SPSMETFLSILEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T + +K E+ I Y G+ + V P+ N+ + P Sbjct: 57 TPSDFFKEKAKEKVLYKKSERTIYDEY-----DRGYILNWVVPSSNENEMEPLIITIKPG 111 Query: 128 NGIYA---IQTQDTRHKTQDT 145 + + ++ + + Sbjct: 112 SSYKSFEPSESDTFIYCLEGC 132 >gi|332796468|ref|YP_004457968.1| XRE family transcriptional regulator [Acidianus hospitalis W1] gi|332694203|gb|AEE93670.1| XRE family transcriptional regulator [Acidianus hospitalis W1] Length = 190 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 11/121 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + LT + LA++ G+ + K + I+ P I KI I Sbjct: 8 LKKLRQIAGLTQAELAKRVGVSQSFIAKIENGKID-----PKFSIIKKIYDELLLMINIQ 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------TGNKWNTVGVPEIRSP 126 ++ +L G ++ V + +I S Sbjct: 63 DTAEKIMHSPVIVAHEKDDILSVVNKMENYNISQIPVVNNDEKLIGIIYDYVLLRKIISN 122 Query: 127 H 127 + Sbjct: 123 N 123 >gi|222147026|ref|YP_002547983.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734016|gb|ACM34979.1| transcriptional regulator [Agrobacterium vitis S4] Length = 131 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F +A+ + ER ++ +A+ G+ P + + GR PS + + + Sbjct: 1 MTPF-----GDAVRGLRERKGVSQKDMAKAIGVTPAYLSALE----HGRRGKPSFDLLQR 51 Query: 61 ILAATNETICQ 71 I N + Sbjct: 52 IAGYFNIIWDE 62 >gi|148555803|ref|YP_001263385.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148500993|gb|ABQ69247.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 473 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 20/216 (9%), Positives = 49/216 (22%), Gaps = 36/216 (16%) Query: 1 MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + +++ + + +R L + +A + GL + ++ + + R P+ Sbjct: 1 MARRTGTRLFAGHELRALRQRVGLGQAAMAARVGLSVSYLSQLEN---DDRPITPAVGEA 57 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 A + T ++ PL G V Sbjct: 58 --FAKAFPIDWNRDTAGDAERRLATLREAFADPLFANAEVGPQMLHRMVEQQPVFADQFV 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI--------LNSAIQV----- 165 + + + LP D ++ A + Sbjct: 116 RLHDAWRRAEERLQLVDDRIASGVPGDDRLPWEEVRDWFHEEGNYVDAIDRAAEALADDL 175 Query: 166 ----------------NCGDRLLIKPRTGDIVAKVL 185 G ++ G + + Sbjct: 176 DAEPLPEALIAHALKRRHGVDIVTAADDGGGMLRRF 211 >gi|222053821|ref|YP_002536183.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563110|gb|ACM19082.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + I + + +T LA K G+DP + + PS E++ Sbjct: 1 MKT-TKELLGARIKELRKLRKVTQEKLAEKIGVDPKYVSFIEVGRS-----SPSLEALEN 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 I A + I L + + R + + L Sbjct: 55 ISQALDVEIKDLFEFSHHEARPASIDQIDSVLETVTDDQLKILH 98 >gi|310779002|ref|YP_003967335.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309748325|gb|ADO82987.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 179 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 12/138 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ + LT LA + L ++ +R PS ++ IL + Sbjct: 3 IGEKIKRLRQGKLLTQEELADRCELSKGFISQLERDLT-----SPSIATLVDILESLGTN 57 Query: 69 ICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + + + + + + + + T + + + Sbjct: 58 LKEFFNEEEDEKIVFSNDDFFEFEDNDLKYRIDWIVPNAQKNAMEPILITLAQEGSYKLE 117 Query: 122 EIRSPHNGIYAIQTQDTR 139 Y ++ Sbjct: 118 SAHEGEEFGYVLKGNIYV 135 >gi|302379450|ref|ZP_07267937.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|303233840|ref|ZP_07320493.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] gi|302312795|gb|EFK94789.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|302495035|gb|EFL54788.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] Length = 98 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I A+ NLT L+ K G+D + +K + R PS + ++ Sbjct: 29 DIIRALVSARTSQNLTQKQLSEKTGIDQSDISKLENGT-----RNPSINLLKRLADGLGM 83 Query: 68 T 68 Sbjct: 84 D 84 >gi|284029961|ref|YP_003379892.1| SARP family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809254|gb|ADB31093.1| transcriptional regulator, SARP family [Kribbella flavida DSM 17836] Length = 1081 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E + + +T LA +AGL + ++ GR R P +S+ + A Sbjct: 19 RFGELLRAFRRQAGITQRALADRAGLSAGAIRDLEQ----GRTRSPKADSVQALATALG 73 >gi|269139111|ref|YP_003295812.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] gi|267984772|gb|ACY84601.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] Length = 194 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 1 MTSFSHKKIWEA-IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M S +I ++ I R+ + T + LA+++G+ +K +R PS Sbjct: 1 MDKTSKNQIVDSDIARLLLKHRKTRGWTVAELAQRSGVSQAMISKVERGTS-----SPSA 55 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + ++ +A N T+ + + + S G + P G Sbjct: 56 TILSRLASAMNITLSTFFAELEQHQNSRVRFAHQQQHWTDEQS---GITRWSLSPVGACP 112 Query: 116 NTVGV 120 + V Sbjct: 113 ELIRV 117 >gi|21283165|ref|NP_646253.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|300911879|ref|ZP_07129322.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21204605|dbj|BAB95301.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|300886125|gb|EFK81327.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 107 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 5/87 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I + I ++ + +N+ + A K G++ ++ ++ + +R E I +I Sbjct: 1 MRTSAEIGKLIKQLRKENNVNLTDFAIKIGVNKSTLSRYENG-----SRKIPMEDIAEIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89 A T LL + + Sbjct: 56 NALKVTPEYLLLKNRQPENEVQHRAAH 82 >gi|325282527|ref|YP_004255068.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] gi|324314336|gb|ADY25451.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] Length = 67 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + H LT + LA + + + N + + PS F++ I Sbjct: 3 NRIKVLRAEHGLTQAELADRLDVSRQTVNALETGKYD-----PSLPLAFRLARLFGLRIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DIFQDEE 64 >gi|322390908|ref|ZP_08064416.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142421|gb|EFX37891.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 158 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 6/146 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + E + + + G+ F + + Sbjct: 57 YID-IVGEEKMLTPVEDYQLTLKIEVIKERGANILAQLYRFQDEQGISFDDTSNPWVLMS 115 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKG 154 + + + Y Sbjct: 116 DDLSDLLNTKIYLVGTVDEVERYNGY 141 >gi|307328736|ref|ZP_07607908.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306885685|gb|EFN16699.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 204 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 6/127 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESIF 59 ++ + + + LAR+ G+ ++ ++ +R I +T ++ Sbjct: 24 EARLATRLGDLRRERGWSLDELARRTGISRSTLSRLERGEISPTAALLNTLCAAYERTMS 83 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++LA Q++ E + P +G G G G G Sbjct: 84 RLLAEVEAEPPQVVRAAAQPVWRDETSGFARRSVSPPHAGLRGEVVEGTLRPGADIAYDG 143 Query: 120 VPEIRSP 126 P Sbjct: 144 PPVPGVE 150 >gi|302557707|ref|ZP_07310049.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] gi|302475325|gb|EFL38418.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] Length = 509 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQTQLAEALNTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|15894128|ref|NP_347477.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15023733|gb|AAK78817.1|AE007599_13 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508255|gb|ADZ19891.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 179 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I R+ LT LA + L ++ +R PS ++ IL A Sbjct: 2 DIGEKIKRLRIEKQLTQEELANRCELSKGFISQIERNLT-----SPSIATLTDILDALGT 56 Query: 68 TICQLLDLPFS 78 + Sbjct: 57 NLPDFFKEDNQ 67 >gi|325979442|ref|YP_004289158.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179370|emb|CBZ49414.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 119 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 9/99 (9%), Positives = 34/99 (34%), Gaps = 2/99 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + LT +A+K + S++ ++ +P+ E + ++ + + + Sbjct: 4 ERLKKLRKEAGLTQQQVAKKLRVGQNSYSNWEKGIRT--PIFPTIEKLAELFNVSTDYLT 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 D+ + + + + + Sbjct: 62 GKTDIKEKNENNSIETTANVLFRTTVKDLNLTPEQEEQL 100 >gi|284030440|ref|YP_003380371.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809733|gb|ADB31572.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 508 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I + T + LA G ++ N+ ++ + E + +I A Sbjct: 8 RIGNLIRDARKHRGWTQTQLADVLGTSQSAVNRIEKGHQN-----LTLEMLARIGEAL 60 >gi|254450252|ref|ZP_05063689.1| putative phage repressor [Octadecabacter antarcticus 238] gi|198264658|gb|EDY88928.1| putative phage repressor [Octadecabacter antarcticus 238] Length = 218 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 57/222 (25%), Gaps = 16/222 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 ID R L+ + +R A +P+ + G + + ++ ++ + Sbjct: 1 MSIIDAALLRKGLSAAAASRLAVGNPSLIKNMRN--KTGNPKRFNAHALKQLADVLDLEF 58 Query: 70 CQLLDLPFSDGR---------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + S P V + Sbjct: 59 YFGDARTQTVVHLPAGFAERTIEPLAAATARQEALEMGFLPIPYHSAALPNFRGTAPVAL 118 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + A M+P G + +L+++ D + G Sbjct: 119 ARQWLTASTLVA--ETLAFLPVVTDDMIPTLTIGALALLDTSDVDLHDDGIWALALKGRY 176 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219 V + + L PV + +++ + +++ Sbjct: 177 VFARIQRPSPNMLVLKGDKPNQPVQVFKDAELRTLKVLGKVV 218 >gi|197284169|ref|YP_002150041.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227357957|ref|ZP_03842299.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194681656|emb|CAR40714.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227161692|gb|EEI46724.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 106 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + T S LA K G+ F++ +R + + + K L Sbjct: 15 VGKRIQKRRKELGYTGSQLAAKLGVSQQQFSRYERGLNKIDLTYLVL--LAKFLNTPIYW 72 Query: 69 ICQLL 73 + Sbjct: 73 FFEDC 77 >gi|317131914|ref|YP_004091228.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469893|gb|ADU26497.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 118 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 9/107 (8%), Positives = 25/107 (23%), Gaps = 5/107 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I + + E L+ + +A G + N+ + P + + Sbjct: 2 KEIGNRLRALREGVKLSQAKIANLVGTTQATINRYETGVS-----SPPLNVLIWYADHFD 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 ++ + + P + Sbjct: 57 VSMDYIFARTEKPQGKLYDYRPKFIESNEEFKQFLEMCFDPTSPMND 103 >gi|226305077|ref|YP_002765035.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184192|dbj|BAH32296.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 168 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 5/81 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA+ AG+ ++ +R R PS + + +I Sbjct: 36 DIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERG-----LRKPSADVLAQIAKGLRV 90 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 + L + + Sbjct: 91 SSEVLYVQAGYLEQRPHSPIR 111 >gi|255306587|ref|ZP_05350758.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 404 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI + I + + NLT LA+ G+ + +K + +P E + + Sbjct: 2 QIKIGKVIQCLRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56 Query: 66 NET 68 N + Sbjct: 57 NVS 59 >gi|224283083|ref|ZP_03646405.1| Hypothetical transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140233|ref|ZP_07802426.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132743|gb|EFR50360.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 161 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 7/147 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT--N 66 I + I + E LT S A + + + ++ ++ E PS + I I Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAE-----PSIDMIRLISTRFEVP 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + P G + + + G + Sbjct: 58 MPRLMEMPDNGFCQSCAMPFYRPEDHGTEPDGTRSGDYCNYCYDDGVFLQDYANSDELVA 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRK 153 ++ + + M L Sbjct: 118 ACAPMMAESCHISVEQAEDCMSALLPN 144 >gi|197103371|ref|YP_002128749.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] gi|196480647|gb|ACG80174.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] Length = 120 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + AI ER LT + LA GL +R R PS ++ + Sbjct: 16 QKSVGRAIRMHRERVGLTQAALAEAVGLTEQYIGVVERGA-----RAPSFRTLEALARTL 70 Query: 66 NETICQLLDLP 76 + P Sbjct: 71 KTPVRDFFPHP 81 >gi|167769004|ref|ZP_02441057.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] gi|167668644|gb|EDS12774.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] Length = 136 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 5/100 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ H+ + + I E T LA +A + +K + P+ + + Sbjct: 7 MSMKLHRMLGKNIRFWREARGFTQEELAFRAQTSSSYISKMELGKEN-----PTITVLER 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 I A C LL +KK+ Sbjct: 62 IAKALAIDPCMLLLNTCRCAENAKKKQICDQQPVLTDYQE 101 >gi|163790911|ref|ZP_02185335.1| DNA-binding protein [Carnobacterium sp. AT7] gi|159873864|gb|EDP67944.1| DNA-binding protein [Carnobacterium sp. AT7] Length = 180 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 36/190 (18%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + NLT LA + L ++ +R PS E F IL Sbjct: 2 EIGNQIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSV-----PSMEVFFDILEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + D ++ + G+ + P N+ V Sbjct: 57 SPKDFFDEKQ----EEQRVVYTKDEITVYEDDEKGYEIKWLVPESNENEMEPV------- 105 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + T + + K S+ + V G+ + K + Sbjct: 106 ---FLKLTTNGQFKEFGPSLAETFGY-----------VLEGEICVEIG------LKRYFA 145 Query: 188 RRGRSIDLMS 197 ++G SI + Sbjct: 146 KKGESIYFHA 155 >gi|15895325|ref|NP_348674.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15025041|gb|AAK80014.1|AE007708_10 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325509470|gb|ADZ21106.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 136 Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 1/114 (0%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I R+ E + L+ + L T+ + ++ G P E++ K+ Sbjct: 11 ETFGEYIKRIRELRGYSQRKLSTLSDLSNTTICRIEKGSENG-IENPDAETVVKLAEGLK 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 LL ++ ++ G+ +S V Sbjct: 70 LEKKALLIAAGYLDNENVEETTDLKECIRIALQKLGWINSYNDINEETITYVEF 123 >gi|303327942|ref|ZP_07358381.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302861768|gb|EFL84703.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 156 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ LT LA K G+ S ++ +R I P E + + A + Sbjct: 50 VGTNIQERRKKLGLTQECLAEKIGVGQQSLSRMERGDI-----APKLERLPDVAATLRCS 104 Query: 69 ICQ 71 + Sbjct: 105 VAD 107 >gi|269104497|ref|ZP_06157193.1| error-prone repair protein UmuD [Photobacterium damselae subsp. damselae CIP 102761] gi|268161137|gb|EEZ39634.1| error-prone repair protein UmuD [Photobacterium damselae subsp. damselae CIP 102761] Length = 79 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200 GD+L+++ A ++ G ++ + + K L+ S L N Sbjct: 6 IYDGDLLVVDRAEEIKPGRIVIARI-YDEFTCKRLVRY-DESWWLQPENP 53 >gi|240103181|ref|YP_002959490.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] gi|239910735|gb|ACS33626.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] Length = 65 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E LT LA+ G+ + ++ + PS FKI I Sbjct: 3 NRLRELREAKGLTQEELAKALGVTRQTIIAIEKGKYD-----PSLRLAFKIARFFGLKIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DVFIYEG 64 >gi|227891904|ref|ZP_04009709.1| hypothetical protein HMPREF0545_1403 [Lactobacillus salivarius ATCC 11741] gi|227866238|gb|EEJ73659.1| hypothetical protein HMPREF0545_1403 [Lactobacillus salivarius ATCC 11741] Length = 95 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + +++ I+ + N+ P LA KAG+ + + K GR + PS E + KI Sbjct: 26 ESMYKIIELRLKEKNMKPRELANKAGISTGTLSDLK----SGRLKKPSFELLEKIADVLE 81 Query: 67 ETICQLLDLPF 77 + Sbjct: 82 MDMNDFRKNEG 92 >gi|90412517|ref|ZP_01220520.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90326554|gb|EAS42960.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 212 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 53/215 (24%), Gaps = 12/215 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++A+ ++ L GL + ++ R + +I N + Sbjct: 4 LERIKQLAKIQGISQKQLGESLGLQQGTMSRKLSGKYGIEVRE-----LERIAETLNTS- 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + L T + I S G+ + V + Sbjct: 58 --IGYLLTGQIDTGTQATTAITHESSQGSTCTYIPIIHRKDFGSFIDGESVNVVSKRVIP 115 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + ++ G + + R + + Sbjct: 116 QHLERDDCLGLFVDNENISQCAPIGSYALATKQATYRPKQPVFASVRDSEPDFYHMTQLA 175 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221 I S +P V + + I+ WA Sbjct: 176 DGVIFSTSQ-PDFPNLFVNNDEFKVHGYIIQSDWA 209 >gi|89069298|ref|ZP_01156661.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89045174|gb|EAR51242.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] Length = 202 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 7/162 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + KI A+ R + +T +A AGL ++++R PS S+ KI Sbjct: 12 TDSKIGAALRRYRKSQGMTLRDVAEGAGLSTGFISQAERDIAV-----PSLSSLRKIAQV 66 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ +L + + E+ + + S + + G ++V + + Sbjct: 67 LGVSLQDILPETVPAMEASRRSERRVYSAHPGSSAAMAYERISTTFPGATLSSVIMRQPP 126 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + + + ++ + + G+ +IL+ ++ Sbjct: 127 GHRSELQSHDGEEIFFVLEGCVTIE--LDGERIILHPGDSLH 166 >gi|221195204|ref|ZP_03568260.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] gi|221185107|gb|EEE17498.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] Length = 236 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + + + + LT LA + G+ + ++ + P + + ++ Sbjct: 5 KIGKVLQELRKEKGLTQEQLAEQMGVTRRTVSRWETGSN-----MPDLDILMELSDFYAV 59 Query: 68 TICQLLD 74 + ++L Sbjct: 60 DLREILC 66 >gi|200390330|ref|ZP_03216941.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602775|gb|EDZ01321.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 178 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA +G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117 I N + P ++ T +++ ++ G + Sbjct: 55 IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHKAGVVEH 124 >gi|42519880|ref|NP_965810.1| hypothetical protein LJ1831 [Lactobacillus johnsonii NCC 533] gi|41584170|gb|AAS09776.1| hypothetical protein LJ_1831 [Lactobacillus johnsonii NCC 533] Length = 161 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I R+ + +NLT +A+K + + + + P E I I ++ Sbjct: 5 EQIKRLRKENNLTQEEMAKKLNVTRQTISNWENNRN-----LPDFEIIILIAETFGVSLD 59 Query: 71 QLLDLPFSDGRTTEK 85 +L+ + + Sbjct: 60 ELILGDKKMNKIEQT 74 >gi|57650163|ref|YP_185761.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus COL] gi|87161187|ref|YP_493503.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509095|ref|YP_001574754.1| bacteriophage repressor [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|282926178|ref|ZP_06333813.1| bacteriophage repressor [Staphylococcus aureus A9765] gi|294850170|ref|ZP_06790906.1| bacteriophage repressor [Staphylococcus aureus A9754] gi|15625525|gb|AAL04143.1|AF410775_19 unknown [Staphylococcus aureus subsp. aureus COL] gi|57284349|gb|AAW36443.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus COL] gi|87127161|gb|ABD21675.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160367904|gb|ABX28875.1| bacteriophage repressor [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|282592319|gb|EFB97336.1| bacteriophage repressor [Staphylococcus aureus A9765] gi|294822944|gb|EFG39377.1| bacteriophage repressor [Staphylococcus aureus A9754] gi|315197246|gb|EFU27584.1| bacteriophage repressor [Staphylococcus aureus subsp. aureus CGS01] gi|329313560|gb|AEB87973.1| Bacteriophage repressor [Staphylococcus aureus subsp. aureus T0131] Length = 110 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 21/45 (46%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 ++ +I I + N++ S LAR+ G+ ++ ++ E Sbjct: 1 MRTNDEIITIIKTSMKEQNMSLSELARRVGVAKSAVSRYLNLTRE 45 >gi|329767803|ref|ZP_08259319.1| hypothetical protein HMPREF0428_01016 [Gemella haemolysans M341] gi|328838904|gb|EGF88498.1| hypothetical protein HMPREF0428_01016 [Gemella haemolysans M341] Length = 245 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 26/233 (11%) Query: 11 EAIDRMAERHNLTPSGLARK-------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + ++ NL P + R+ + N S + K L Sbjct: 8 DRLKQIMSERNLRPIDILRQSEYYQKEMNIKLNKVNLSHYISGRNEPNKEKVRLLAKTLK 67 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----TGNKWNTVG 119 + + + + +E + + + +P GN + Sbjct: 68 VSEQWLNGFDAPKDAVLTKSELYKHFDMVNQSDKIALDVKYLEKKYPNDTTIGNIISNYD 127 Query: 120 VPEIRSP----------HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 E + Y + D D SMLPLYR + L++ G+ Sbjct: 128 KLEDKQRQSLLQYSDILLEASYQADSYDIVATMMDNSMLPLYRTDERLMVTFGYDFKYGE 187 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219 LI+ + KV SI L+ +N YPV T+ + + I +I+ Sbjct: 188 IYLIECDKDIYIRKVFY--NEYSIKLVPINDEYPVITISLPLEKHFKIIGKIV 238 >gi|317495181|ref|ZP_07953551.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] gi|316914603|gb|EFV36079.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] Length = 181 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 9/122 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + R+ + NLT L + L ++ +R PS E+ F IL Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLA-----SPSMETFFNILEVLGCA 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 D + + E + G+ + + P N+ + H+ Sbjct: 59 PKDFFDKESTSQKVYYSLEDQTSYEETDE----GYILTWLVPESNEKEMESLILRLEKHS 114 Query: 129 GI 130 Sbjct: 115 NY 116 >gi|266619976|ref|ZP_06112911.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288868440|gb|EFD00739.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 260 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 40/173 (23%), Gaps = 7/173 (4%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + + L+ LA + + +K + +P TE + K+ + LL Sbjct: 10 LRKEKGLSQEALAEQLNTTRQAISKWENNHG-----YPETEKLLKLSDIFQVPVDFLLKE 64 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 + S + W G+P P Sbjct: 65 TTGIENQNSGNIYVTREMAVSYLSSESMVNRYFGLGTAAWLLGGIPYNMLPDGDPLKTPG 124 Query: 136 QD-TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA-KVLI 186 ++ +++ D + + + + K Sbjct: 125 IAVFLLAGICIWIVGAFKENDTHKILKQEPLILDHVFYQELSAQYMQIKKRYQ 177 >gi|226322466|ref|ZP_03797984.1| hypothetical protein COPCOM_00237 [Coprococcus comes ATCC 27758] gi|225209083|gb|EEG91437.1| hypothetical protein COPCOM_00237 [Coprococcus comes ATCC 27758] Length = 45 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 KKI + + + NLT LA K G+ + ++ + G Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGGS 43 >gi|333022876|ref|ZP_08450940.1| putative regulatory protein [Streptomyces sp. Tu6071] gi|332742728|gb|EGJ73169.1| putative regulatory protein [Streptomyces sp. Tu6071] Length = 184 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 12/131 (9%), Positives = 36/131 (27%), Gaps = 5/131 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + + +T + L+ G+ ++ ++ + R P+ E + + A + Sbjct: 2 GERLRGLRKERGMTLAALSTSTGISVSTLSRLESG-----LRRPTLELLLPLARAHRVAL 56 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +L+ + P + P + Sbjct: 57 DELVGTRPVADPRVRAEPIVRHHRRMYPLSRHPGGVQAYRMVIEGGSRDPEPRTHEGYEW 116 Query: 130 IYAIQTQDTRH 140 +Y + + Sbjct: 117 MYVLHGRLRVV 127 >gi|313106352|ref|ZP_07792591.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310879093|gb|EFQ37687.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 195 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 14/178 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + L+ LAR A + + + S ++ +I AA Sbjct: 22 EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 76 Query: 67 ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L+ P +D E LL P+ + G V Sbjct: 77 VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 134 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P+ + I+ + + VN GD ++ R Sbjct: 135 EPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRN 192 >gi|264678746|ref|YP_003278653.1| DNA polymerase V [Comamonas testosteroni CNB-2] gi|262209259|gb|ACY33357.1| DNA polymerase V [Comamonas testosteroni CNB-2] Length = 136 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 3/87 (3%) Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SM GDI++++ ++ G ++ ++V + L S G + Sbjct: 43 PKATFLLRVAGPSMQEHGIDDGDIVVVDRELRARDGSIVVAVVER-ELVIRALDSD-GDT 100 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 L + YP I ++ Sbjct: 101 CKLRAGAPTYPDIVPPEGQTLEIWGVV 127 >gi|167761228|ref|ZP_02433355.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] gi|167660894|gb|EDS05024.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] Length = 234 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 10/103 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +FS E + ++ ++T LA + + + +K + +P E I + Sbjct: 1 MAAFS-----ENLQFYRKKADMTQEELAERMEVSRQTISKWESGAT-----YPEMEKILQ 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + + L+ ++ + + + F + + G Sbjct: 51 LCEMFRCDMDTLIRGDATESFAEDNAQYDQHKNEFSKAVAFGV 93 >gi|167590249|ref|ZP_02382637.1| putative transcription regulator protein [Burkholderia ubonensis Bu] Length = 217 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 49/191 (25%), Gaps = 18/191 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIF 59 +++I + + T LA ++G+ + + +R + S+ Sbjct: 16 NERIARRVRALRATRGHTLDALAARSGVSRSMISLIERGAASPTAVVLDKLAAGLGVSLA 75 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNT 117 + + + + P G FP G + Sbjct: 76 SLFDGAPDDAPAQPLVRRAQQAQWRDPASGYVRRNLSPPGWPSPIQLVEVTFPAGARVAY 135 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-------ILNSAIQVNCGDR 170 + H ++ I+ + T + R GD L ++ S Sbjct: 136 EAAGRESAVHQQVWVIRGRIDV--TLGDQV-HALRDGDCLAMRLDQPLVFSNPTSRPAHY 192 Query: 171 LLIKPRTGDIV 181 +++ Sbjct: 193 VVVLCEGHAAT 203 >gi|82750708|ref|YP_416449.1| transcriptional regulator [Staphylococcus aureus RF122] gi|82656239|emb|CAI80652.1| probable transcriptional regulator [Staphylococcus aureus RF122] Length = 179 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 56/197 (28%), Gaps = 35/197 (17%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + NLT LA++ L ++ + PS E+ I+ Sbjct: 2 NIGNKIKNLRRIKNLTQEELAKRTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126 T + ++ +K+E+ I Y G+ + + N+++ + P Sbjct: 57 TPSEFFKDSENENVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111 Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183 + ++ + I +N G + + K Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEIYQAQEEDVLYFKA 154 Query: 184 ----VLISRRGRSIDLM 196 L + ++ Sbjct: 155 RDNHRLSNESNNETRIL 171 >gi|330821781|ref|YP_004350643.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] gi|327373776|gb|AEA65131.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] Length = 186 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 5/96 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H +I E + + + + LA +G+ ++ + +R P+ + K+ A Sbjct: 4 HDRIAERLRALRDARGWSLETLAEHSGVSRSNISLIERGQS-----SPTAVVLDKLATAL 58 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + L + L+ P+ Sbjct: 59 AVPLSSLFGESGESEAPSPIARAADQPLWTDPASGY 94 >gi|313901693|ref|ZP_07835124.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313468044|gb|EFR63527.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 216 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + + ++ LAR++G+ ++ + R PS + + +I AA Sbjct: 2 EVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPA----RKPSVDVVLRIAAALEV 57 Query: 68 TICQ 71 + + Sbjct: 58 DLAE 61 >gi|313900820|ref|ZP_07834310.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312954240|gb|EFR35918.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 162 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 2/104 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + I + + +T LA K G+ P + +K + P + + Sbjct: 2 KALGTKISELRKARGMTQDELADKMGVSPQAVSKWENDLSM--PDLPVLIELSDFFHISL 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + + ++K+ E L G P Sbjct: 60 DDFLKEKVQTVELLPEDKRKDIEQMFLRVYVDSENGDRVRVNLP 103 >gi|258516973|ref|YP_003193195.1| helix-turn-helix domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780678|gb|ACV64572.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 383 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 35/136 (25%), Gaps = 5/136 (3%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K I + R+ E T S +A AG+ ++ + P ++ I + Sbjct: 1 MDQKIIGANLRRIREAKGWTQSQVADLAGISRVAYRNIENGNTT-----PKVSTLQNIAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + L + + K++ + + D + + Sbjct: 56 AVGVKLQDLFIPVRTLKGVRFRASKKMNSRDNILTEVAHWLDDFNYLERLLNDHKDYQFE 115 Query: 124 RSPHNGIYAIQTQDTR 139 D Sbjct: 116 DLTRELSSMPPGDDRA 131 >gi|228959512|ref|ZP_04121199.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800192|gb|EEM47122.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 373 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 14/194 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKTIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 N +I +L+ G+ K F ++ + Sbjct: 56 YFNISIDELICYTPQMGQEDIKNLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPL--- 112 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182 + + + + + L + GD L+ + T Sbjct: 113 ---LLQMGLLFINHHMLTGDTDKRIEILEEAMSLFSRVQEE--SGDVSLVKEAVTFQATC 167 Query: 183 KVLISRRGRSIDLM 196 ++++R + L+ Sbjct: 168 YLILNRPNEVLQLL 181 >gi|221369865|ref|YP_002520961.1| hypothetical protein RSKD131_4028 [Rhodobacter sphaeroides KD131] gi|221162917|gb|ACM03888.1| Hypothetical Protein RSKD131_4028 [Rhodobacter sphaeroides KD131] Length = 222 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 61/208 (29%), Gaps = 22/208 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + E + L+ AG+ + R P + + Sbjct: 1 MQKKTLDAFVRGLQIVMEAEGIKMKPLSVAAGMGESGVRDLIRNES-----SPKVANAYA 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T+ +++ + + I + +G+ G+ V Sbjct: 56 LARELGRTVDEIIQIGMTGDLNARPAHAPIAVAGCVGAGARVDLLDAYEK-GDGMYHVAR 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI------QVNCGDRLLIK 174 P PH + + SM+PLYR G +L A + + + Sbjct: 115 PPQLKPHG--------IVAVEVKGESMMPLYRPGSVLFYTRAAAEGVPVEALNT-PCVCE 165 Query: 175 PRTGDIVAKVLISRR-GRSIDLMSLNCC 201 G KV+ + L+SLN Sbjct: 166 DADGRAWLKVVKVGSQEGTFSLLSLNPD 193 >gi|218281756|ref|ZP_03488112.1| hypothetical protein EUBIFOR_00680 [Eubacterium biforme DSM 3989] gi|218217207|gb|EEC90745.1| hypothetical protein EUBIFOR_00680 [Eubacterium biforme DSM 3989] Length = 83 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 18/43 (41%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 KKI I ++ T LA K G+ + ++ + + + Sbjct: 39 KKIGAFIAMNRKKKGYTQEQLAEKLGVTNKTISRWENGVSQTK 81 >gi|326329678|ref|ZP_08195999.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325952443|gb|EGD44462.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 185 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 6/130 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ I + T LA A + P++ ++ + R S E + + Sbjct: 6 KQVGPRIRAIRHSKGWTLEQLAAMAEMSPSTLSRLESG-----KRQASLELLIPLTRHLG 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L P + + P G S T V P + Sbjct: 61 VGL-DSLVTPSVPDPRVRRPVIRRDGMEIAPLTPEGSPVSTFKITYEPVTEVPEPRVHDG 119 Query: 127 HNGIYAIQTQ 136 + +Y + + Sbjct: 120 YEWLYVLSGK 129 >gi|317506959|ref|ZP_07964728.1| hypothetical protein HMPREF9336_01099 [Segniliparus rugosus ATCC BAA-974] gi|316254717|gb|EFV14018.1| hypothetical protein HMPREF9336_01099 [Segniliparus rugosus ATCC BAA-974] Length = 148 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+ ER +T + LAR GL ++ K + P+ E++ K AA Sbjct: 11 LSALAHARERRRMTRADLARVTGLSTSTIQKWESGAA-----SPNIETLAKAAAALG 62 >gi|284007818|emb|CBA73695.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 8/78 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + E I + L+ LA G+ S ++ +R P E++ Sbjct: 1 MNM---KTLGERIKARRQELKLSQRALASILGIAHVSISQWERNEST-----PKGENLMA 52 Query: 61 ILAATNETICQLLDLPFS 78 + + L + + Sbjct: 53 LAKTLHCEPSWLFEEQGN 70 >gi|307324538|ref|ZP_07603745.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889782|gb|EFN20761.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 410 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT S + + + R+ + +LT LA +AG+ + + ++ G R + + + Sbjct: 1 MTDLS---VGKRLARLRDIRDLTQEQLADRAGVSVDTIRRLEQGTQRG-ARIATYQKLAG 56 Query: 61 ILA 63 L Sbjct: 57 ALD 59 >gi|282866826|ref|ZP_06275862.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558318|gb|EFB63884.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 509 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|256160334|ref|ZP_05458027.1| hypothetical protein BcetM4_15110 [Brucella ceti M490/95/1] gi|256255538|ref|ZP_05461074.1| hypothetical protein BcetB_14887 [Brucella ceti B1/94] gi|261222746|ref|ZP_05937027.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265998708|ref|ZP_06111265.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260921330|gb|EEX87983.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262553332|gb|EEZ09166.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 470 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 4 FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI+ I R+ LT + +A G+ P+ N +R R + + + K+ Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55 Query: 62 L 62 Sbjct: 56 A 56 >gi|239907891|ref|YP_002954632.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239797757|dbj|BAH76746.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 107 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + + I + ++ LT LA KA L + +R P+ ES+ + A Sbjct: 5 HEILGKRIQSLRKKAGLTQLELAEKANLSLKHLGEIERGRGN-----PTLESLHNLSVAL 59 Query: 66 NETIC 70 + ++ Sbjct: 60 DISLM 64 >gi|228984922|ref|ZP_04145092.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774872|gb|EEM23268.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 181 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + +++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKLEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K++K I S F + + VP + Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ Sbjct: 117 ENVLEHKGEELAFVLDG 133 >gi|172036041|ref|YP_001802542.1| hypothetical protein cce_1126 [Cyanothece sp. ATCC 51142] gi|171697495|gb|ACB50476.1| unknown [Cyanothece sp. ATCC 51142] Length = 381 Score = 48.2 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 4/115 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKILAATNET 68 E I+ + E +T S LA + G + N+ + E + KI A Sbjct: 24 GETIEEILEEKGMTQSELAERMGRPKKTINEIIKGKAAITPETALQLELVLKIPANFWNN 83 Query: 69 ICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 QL + ++ K + + + G+ + + Sbjct: 84 REQLYRDYLARQEENKRLKEKVAWLEKIPYQAMIKLGWIRNFNNKVEQLRELLDF 138 >gi|300023570|ref|YP_003756181.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299525391|gb|ADJ23860.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 472 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 5/100 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ E LT LAR L P+ N+ ++ R + + KI + + Sbjct: 9 RLKRLREERGLTQVALARALELSPSYLNQIEKNQ-----RPLTVPILLKINSVFGVDVQL 63 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + K P L + + + P Sbjct: 64 FSEDEEARLIADLKDVLADPGLGEHVALTEIREIAANMPA 103 >gi|229084977|ref|ZP_04217229.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44] gi|228698293|gb|EEL51026.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44] Length = 193 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/197 (10%), Positives = 53/197 (26%), Gaps = 19/197 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I ++ +T L+ K+ L ++ +R S E + + Sbjct: 2 NIGMEIKKLRAEKGITLKELSEKSELSVGFLSQLERGLTT--IAVDSLEKLADVFEVHLT 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + ++E + S +P+ + Sbjct: 60 HFFDYPLKRKDMVLRSYEQEIMDSVEGGCIKYSLSTNLENKQLVPRLIEI--LPQKKDEE 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLI 186 Y + ++ + + + +N +V GD + + Sbjct: 118 ILSYKHEGEEFIYVLEGIL---------TIYINGKRHEVYPGDSV----HMDSNIVHNWA 164 Query: 187 SRRGRSIDLMSLN-CCY 202 + + + L+++N Y Sbjct: 165 NYTNKKVKLIAVNTPNY 181 >gi|119487541|ref|ZP_01621151.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] gi|119455710|gb|EAW36846.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] Length = 72 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M KK+ I ++ L+ LA KA L T +R R S ++I Sbjct: 1 MKHEPRKKLGSNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGE-----RNVSLDNIVA 55 Query: 61 ILAATN 66 I A Sbjct: 56 IAHALG 61 >gi|328884992|emb|CCA58231.1| signal peptidase protein [Streptomyces venezuelae ATCC 10712] Length = 144 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198 + SM+P GD L+++ ++ G +++ + ++ K LI RR ++ Sbjct: 20 EVTGVSMVPTLLHGDQLLVHYGARLRPGCVAVVRHPLQQDLLIVKRLIERRDGGWWVLGD 79 Query: 199 NCC 201 N Sbjct: 80 NPD 82 >gi|251779839|ref|ZP_04822759.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084154|gb|EES50044.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 167 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I + E N++ S LARK + P + PS E + KI A Sbjct: 2 NTIGNKIKTLRESKNISKSELARKIEVSPAYITMLENGTKT----NPSLEILNKISFAL 56 >gi|218288780|ref|ZP_03493043.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218241138|gb|EED08314.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 167 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ + LT + LA +A L ++ + R P ++ +I A Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYE-----TNRRQPDERTLAQIAEALGVE 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + Q+ + ++ K P P + + Sbjct: 65 MAQIAPHLTAAAAPASRQAKPAPNESHPDDRAATAPEPNREEREVGD 111 >gi|212697471|ref|ZP_03305599.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] gi|212675470|gb|EEB35077.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] Length = 140 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 8/124 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ E NLT LA+ G+ + ++ + + R R K+ E + Sbjct: 15 LRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYR--------KVYDKLAEVLDTS 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 D +D +E G + + I Y Sbjct: 67 HDYLVTDEDNFILDAREKYGYKGAKDAKEMVDGVIGLMAGGEIDEKDKKAILDSIQEAYY 126 Query: 133 IQTQ 136 I Sbjct: 127 IAKN 130 >gi|281491984|ref|YP_003353964.1| phage repressor [Lactococcus lactis subsp. lactis KF147] gi|281375693|gb|ADA65197.1| Phage protein, repressor [Lactococcus lactis subsp. lactis KF147] Length = 189 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I + ++ + AR+AG+ PT+ + + P+ ++ KI Sbjct: 17 ISNNIRTKIKEEGISQAEFARRAGIPPTTLSGYIKGVTR-----PNAGNLQKISDTLG 69 >gi|182435303|ref|YP_001823022.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775942|ref|ZP_08235207.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] gi|178463819|dbj|BAG18339.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656275|gb|EGE41121.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] Length = 509 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|23502476|ref|NP_698603.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|148559184|ref|YP_001259476.1| Cro/CI family transcriptional regulator [Brucella ovis ATCC 25840] gi|161619553|ref|YP_001593440.1| hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365] gi|163843861|ref|YP_001628265.1| hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445] gi|254702330|ref|ZP_05164158.1| hypothetical protein Bsuib55_15923 [Brucella suis bv. 5 str. 513] gi|254704859|ref|ZP_05166687.1| hypothetical protein Bsuib36_13258 [Brucella suis bv. 3 str. 686] gi|254710644|ref|ZP_05172455.1| hypothetical protein BpinB_10311 [Brucella pinnipedialis B2/94] gi|254714828|ref|ZP_05176639.1| hypothetical protein BcetM6_16109 [Brucella ceti M644/93/1] gi|254717885|ref|ZP_05179696.1| hypothetical protein BcetM_16061 [Brucella ceti M13/05/1] gi|256032137|ref|ZP_05445751.1| hypothetical protein BpinM2_16082 [Brucella pinnipedialis M292/94/1] gi|256061658|ref|ZP_05451797.1| hypothetical protein Bneo5_15035 [Brucella neotomae 5K33] gi|256370026|ref|YP_003107537.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260565903|ref|ZP_05836373.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|261219732|ref|ZP_05934013.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261318215|ref|ZP_05957412.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261322622|ref|ZP_05961819.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261325667|ref|ZP_05964864.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261752894|ref|ZP_05996603.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755553|ref|ZP_05999262.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265989247|ref|ZP_06101804.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|23348469|gb|AAN30518.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] gi|148370441|gb|ABQ60420.1| transcriptional regulator, Cro/CI family [Brucella ovis ATCC 25840] gi|161336364|gb|ABX62669.1| Hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365] gi|163674584|gb|ABY38695.1| Hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445] gi|256000189|gb|ACU48588.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260155421|gb|EEW90501.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|260924821|gb|EEX91389.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295312|gb|EEX98808.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261297438|gb|EEY00935.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261301647|gb|EEY05144.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261742647|gb|EEY30573.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745306|gb|EEY33232.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264661444|gb|EEZ31705.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 470 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 4 FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI+ I R+ LT + +A G+ P+ N +R R + + + K+ Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55 Query: 62 L 62 Sbjct: 56 A 56 >gi|332527737|ref|ZP_08403778.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332112135|gb|EGJ12111.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 189 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 12/125 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + L+ + LA +GL ++ S + ++ A Sbjct: 18 VGQNLRAARQNAGLSQAALAEASGLSRRMIVALEQGDTN-----ISLSRLDRLAEALGVG 72 Query: 69 ICQLLDLPFSDG-------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L+ P + ++ L P+ + G +++ P Sbjct: 73 FADLVRDPAAQTLRLDAVAWRGRHEDSVAVLQASVPARHEAQLWAWTLAPGERYDAEPDP 132 Query: 122 EIRSP 126 E Sbjct: 133 EGWHE 137 >gi|291551052|emb|CBL27314.1| Predicted transcriptional regulator [Ruminococcus torques L2-14] Length = 101 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%) Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD- 205 M PLY GD+ + + G+ + G+ K L + L+SLN Y Sbjct: 1 MEPLYHTGDVAWIQKKDSLANGEIGI-FYLNGNTYIKELHDEPDG-VYLISLNQKYRPIQ 58 Query: 206 TVEMSDIEWIARIL 219 +E + +++ Sbjct: 59 VLESDSFKIFGKVI 72 >gi|291301862|ref|YP_003513140.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571082|gb|ADD44047.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 76 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 4/71 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ ID + +T + LAR+ G+ + + K GR + ++ Sbjct: 1 MDEPKRPEVRVTIDALLAERGMTATELARRVGITLANLSILKN----GRAKAIRLSTLAA 56 Query: 61 ILAATNETICQ 71 + Sbjct: 57 VCRELECQPGD 67 >gi|229490145|ref|ZP_04383992.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229322893|gb|EEN88667.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 168 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 5/81 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA+ AG+ ++ +R R PS + + +I Sbjct: 36 DIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERG-----LRKPSADVLAQIAKGLRV 90 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 + L + + Sbjct: 91 SSEVLYVQAGYLEQRPHSPIR 111 >gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] Length = 110 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ L+ + L + G+ + + + E P+ ++I K+ A + + Sbjct: 15 EKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSE-----PNLKTINKLCEALDVPLR 69 Query: 71 QLLDLPFSDGR 81 ++ D + Sbjct: 70 YFINEERVDYQ 80 >gi|332980703|ref|YP_004462144.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698381|gb|AEE95322.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 130 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I ++ L+ +A G+D T++NK + + P +++ K+ + Sbjct: 5 EIIKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQ-----PDFDTVQKLADFFGVS 57 >gi|325263078|ref|ZP_08129813.1| DNA-binding protein [Clostridium sp. D5] gi|324031471|gb|EGB92751.1| DNA-binding protein [Clostridium sp. D5] Length = 207 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 7/113 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + LT L+ + G++ S +K +R +P+ +++ K+ + T Sbjct: 11 LGHNIQVIRKLKGLTQQELSEQIGINLQSLSKIERGIN-----YPTFDTLQKLAEILDVT 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + L T+ + + L + + + Sbjct: 66 PNE--LLAGELKSTSHIEANILKFLEHEERLNVELAHGQYDNPLDADEWIEYE 116 >gi|299768445|ref|YP_003730471.1| Helix-turn-helix family protein [Acinetobacter sp. DR1] gi|298698533|gb|ADI89098.1| Helix-turn-helix family protein [Acinetobacter sp. DR1] Length = 182 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 67/194 (34%), Gaps = 21/194 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + ++R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 6 EIIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L++ P + + + + + + + P Sbjct: 61 IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + + + +++ L + L + GD + K + Sbjct: 120 LSEPHPVGSVEHIIVVEGKALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166 Query: 187 S--RRGRSIDLMSL 198 G L+S Sbjct: 167 RALETGTKALLISE 180 >gi|302552372|ref|ZP_07304714.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302469990|gb|EFL33083.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 195 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MATLNVGNLGDYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + A + L ++ E E + Sbjct: 56 VAKALRISAETLYVRAGILDAERDRDEVETRAVILAD 92 >gi|326390754|ref|ZP_08212307.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993148|gb|EGD51587.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 130 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + NLT LA+ G+ ++ + + P E++ KI N + Sbjct: 5 DRLKELRKEKNLTQGDLAKILGISRSTIAGYE-----TERKEPDYETLKKIADFFNVS 57 >gi|229592426|ref|YP_002874545.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229364292|emb|CAY52026.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 81 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + I + + L+ S LA + G+ ++ + + I T + IL Sbjct: 2 EELGKLIRSLRKTAGLSQSQLAHRHGMSRSTISGIENNTIS----EVGTRKVAAILEGLG 57 Query: 67 ET 68 Sbjct: 58 YE 59 >gi|170016442|ref|YP_001727361.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803299|gb|ACA81917.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 122 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 5/108 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + ++ LT GLA K + K + R P I I + T+ Sbjct: 6 DRIKELRKQKQLTQQGLADKIEASRDTITKYENG-----RRIPKLAMISLIADVLDTTVD 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L + +T+ + + T + Sbjct: 61 YLQGKTDNALKTSHNGSNNGDEQPLTDAQKQVAYFIDPSATQEDIEQI 108 >gi|222054772|ref|YP_002537134.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564061|gb|ACM20033.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 181 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 14/137 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + R+ ++LT LA +A L ++ + PS ++ I+ Sbjct: 2 KIGERLKRLRMINSLTQEELASRADLTKGYISQLENDAT-----SPSIATLKDIIDVFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEI--------PLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++ + + K + + P+ D + Sbjct: 57 SMQEFFSETIDEDVVYGKDYRVQASGDDEKIRVELLIPAAQNRDMDPAMVTLEPGEEMEE 116 Query: 120 VPEIRSPHNGIYAIQTQ 136 P + + + Sbjct: 117 QPF-HEGEEFGFVLSGK 132 >gi|319936228|ref|ZP_08010648.1| HTH domain-containing protein [Coprobacillus sp. 29_1] gi|319808802|gb|EFW05335.1| HTH domain-containing protein [Coprobacillus sp. 29_1] Length = 151 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 5/81 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + +T LAR+ + + + +R E P + KI + Sbjct: 11 GKQIRHLRTQAGMTQEELARELNVTRQALSNWERDVNE-----PDLNMLKKICFLFGVYM 65 Query: 70 CQLLDLPFSDGRTTEKKEKEI 90 + T EKKEK+ Sbjct: 66 DDFAKGVITKMETYEKKEKQQ 86 >gi|295401783|ref|ZP_06811748.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|312112235|ref|YP_003990551.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|294976150|gb|EFG51763.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|311217336|gb|ADP75940.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 97 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ++ N+T LA + G+ ++ + + P E++FKI A N Sbjct: 26 IAAQIKTRRKQLNMTQQELADRIGVPKSTIGRIEAGLT-----SPRVETLFKISQALNTP 80 Query: 69 ICQLLDLPFSDGRTTE 84 + Sbjct: 81 FIIDGTSRQDHNLHVQ 96 >gi|146311912|ref|YP_001176986.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145318788|gb|ABP60935.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 145 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 9/72 (12%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ A+D ++ S L R+ G++ + + G +P E + A Sbjct: 15 EERLLRALD----EAGISQSELGRRVGVNSQTVSNWCNTGN-----FPRKEKLALFPKAL 65 Query: 66 NETICQLLDLPF 77 + + Sbjct: 66 GKPLYWFFLTDE 77 >gi|116688944|ref|YP_834567.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116647033|gb|ABK07674.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 132 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ AI LT + LA L+ + ++ +R R P+ + ++ A N Sbjct: 20 RVGTAIAEQRRARGLTQAKLAEMIDLEQEAVSRWERGT-----RVPTLHRLQQLSDALNC 74 Query: 68 TICQ 71 ++ Q Sbjct: 75 SVDQ 78 >gi|326388271|ref|ZP_08209874.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] gi|326207437|gb|EGD58251.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] Length = 197 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 7/79 (8%) Query: 1 MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT S + + + + R L+ LA +A + ++ + I PS S+ Sbjct: 1 MTDTSGDVFDVGQRLLELRRRAGLSQRALAARADVPHAQISQIESNRI-----SPSIASL 55 Query: 59 FKILAATNETICQLLDLPF 77 +IL ++ + + Sbjct: 56 RRILGGLGLSMAEFFEPER 74 >gi|325847068|ref|ZP_08169894.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481040|gb|EGC84085.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 132 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 8/124 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ E NLT LA+ G+ + ++ + + R R K+ E + Sbjct: 7 LRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYR--------KVYDKLAEVLDTS 58 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 D +D +E G + + I Y Sbjct: 59 HDYLVTDEDNFILDAREKYGYKGAKDAKEMVDGVIGLMAGGEIDEKDKKAILDSIQEAYY 118 Query: 133 IQTQ 136 I Sbjct: 119 IAKN 122 >gi|260550240|ref|ZP_05824453.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406768|gb|EEX00248.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 182 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L++ P + + E + + + + P Sbjct: 61 IPFARLMEEPSNQVQVIRCGEGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + + + +++ L + L + GD + K + Sbjct: 120 LSEPHPVGSVEHIIVVEGKALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166 Query: 187 S--RRGRSIDLMSL 198 G L+S Sbjct: 167 RALETGTKALLISE 180 >gi|312109734|ref|YP_003988050.1| hypothetical protein GY4MC1_0611 [Geobacillus sp. Y4.1MC1] gi|311214835|gb|ADP73439.1| protein of unknown function DUF955 [Geobacillus sp. Y4.1MC1] Length = 388 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 6/122 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + +T + LA K G+ + ++ ++ PS ESIFK+ Sbjct: 13 RRLKAARVFRGMTITELADKIGVTRQAVSQFEQGKTP-----PSLESIFKLTNVLQFPRD 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSPHNG 129 S + + +F V PE+ P Sbjct: 68 FFYAEDKSVDYIGNTFFRSNSTATKRLREAQKVRVDFIFDVQQFLEKYVNFPELNLPDTK 127 Query: 130 IY 131 + Sbjct: 128 SF 129 >gi|169631162|ref|YP_001704811.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169243129|emb|CAM64157.1| Possible transcriptional regulator [Mycobacterium abscessus] Length = 139 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA KAG+ ++ +R R PS E + +I A Sbjct: 17 DIGGFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRRPSAEVLNQIAKALRV 71 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + L R+ ++ + Sbjct: 72 SAEVLYVRAGILDRSDASPVRDAII 96 >gi|126738803|ref|ZP_01754499.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] gi|126719984|gb|EBA16691.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] Length = 287 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 9/125 (7%) Query: 1 MTSFSHKKIWEA-----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M + K++ A ++R + L+ S LAR G+D ++ ++ + R P+ Sbjct: 1 MQNLIDKRLRAAQFRTRLNRALKDSGLSQSALARATGVDRSTISQLL---TDEGARLPNA 57 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNK 114 + +A + LL L E + + P + G K Sbjct: 58 HVVGACASALGVSADWLLSLSERPESAAELLALSMAMTEAPRALVDERIYEWHREAMGYK 117 Query: 115 WNTVG 119 V Sbjct: 118 IRHVP 122 >gi|300024182|ref|YP_003756793.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526003|gb|ADJ24472.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 213 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 6/158 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + + L+ LA K+G+ + + P+ + +I A + Sbjct: 26 VGENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKS-----APTINLLGRIAEALQVS 80 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ P + G +++ L + P + V + S Sbjct: 81 VPSLISHPAAGGTVIVPRDRATVLASSNGGFTCRALFPWGDPQSIEIYEVTIIAHHSEDV 140 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + + + L+ + Sbjct: 141 AAFE-PGVKKALVVLTGEIELTIAEDSPARLSEGDSII 177 >gi|196231108|ref|ZP_03129968.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196224938|gb|EDY19448.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 224 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I ++ LA +AGL T + +R R S SI K+ A ++ Sbjct: 11 GTTIKSKRSELGMSQEELADRAGLHRTYVSDVERGM-----RNVSLISIEKLAHALGLSV 65 Query: 70 CQLLDLPFSDGRTTE 84 +L + + + Sbjct: 66 WRLFEQASNGTAPDQ 80 >gi|83590463|ref|YP_430472.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573377|gb|ABC19929.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 300 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 6/137 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ E+ +T S L+R++G+ ++ +R S +++ K+ A + Sbjct: 73 VGARLRRLREQKGITLSELSRRSGVSLAHISEIERSRSTA-----SLKTLEKLAAVLEVS 127 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L K ++ + G P + + + Sbjct: 128 TS-SLLRSGQQDSLGAKLKRLREKIGLTQKELAQQVGISHSLIGQIETDRIQPSLSTLSS 186 Query: 129 GIYAIQTQDTRHKTQDT 145 A+ +D Sbjct: 187 LAEALGVSTCYFLMEDD 203 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 5/73 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + R+ E+ LT LA++ G+ + + + I+ PS ++ + A Sbjct: 136 QQDSLGAKLKRLREKIGLTQKELAQQVGISHSLIGQIETDRIQ-----PSLSTLSSLAEA 190 Query: 65 TNETICQLLDLPF 77 + C L Sbjct: 191 LGVSTCYFLMEDD 203 Score = 36.7 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ E + LA + + P + ++ R S ++ ++ A Sbjct: 3 IGEKLKKLREDRGIPLEELADRLDIAPACMVEVEQGT-----RRLSLATLKEVAAILGVD 57 Query: 69 ICQLLDLPFSDGRTT 83 + + + + Sbjct: 58 VSYFQEENDNKNDNS 72 >gi|291279081|ref|YP_003495916.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290753783|dbj|BAI80160.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 196 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 45/139 (32%), Gaps = 7/139 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I ++ +T +A G ++ + + P ++ KI N Sbjct: 7 NIGERIRKLRNDRGMTLQDVANLTGFSKALISQIENNVV-----MPPITTLAKIANVLNV 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNT-VGVPEIRS 125 + + + K+ + ++ + G ++ + + T V + Sbjct: 62 KMTYFFEEEINYKDYYVVKKGDRQFVFREGAKHGYLYEELAHIKNNDLFETFVVTIKPGD 121 Query: 126 PHNGIYAIQTQDTRHKTQD 144 H +++ + + + + Sbjct: 122 THKKLFSHEGYEFMYILEG 140 >gi|254510889|ref|ZP_05122956.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534600|gb|EEE37588.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 184 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 53/177 (29%), Gaps = 20/177 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ ++ + + + LA ++G+ + ++ ++ + P+ E++ + Sbjct: 1 MLDTLSDRLACRLNELRQGRGWSLEQLADQSGISRANLSRMEKG-----DVSPTAETLGR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVF 109 + AA + +LL + EK+ + G G Sbjct: 56 LCAAYGLPMSRLLMMVEDSFDPKVPFEKQPEWHDPETGFTRRSVSPPAEGLGGEVLEGHL 115 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 P G P + + + + + GD L + + Sbjct: 116 PPGTVITY-DTPPKPGQEHHLIVLDGGL-TLTVDG--IAHVLSGGDCLRYHLSGPTR 168 >gi|222530442|ref|YP_002574324.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457289|gb|ACM61551.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 143 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 5/119 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + E++ LT L+ +G+ ++ ++ +R + P+ ++ I A N Sbjct: 2 NIGKKIAELREKYGLTRYKLSELSGVSQSALSEIERGIKQ-----PTITTLENICKALNI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T+ + K + P F +P Sbjct: 57 TLADFFAEKEPEIPPEVKSLINTVVRLSPTQIRLLDSFLKTFQPSKVIFLDDLPPEAVE 115 >gi|166367802|ref|YP_001660075.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843] gi|166090175|dbj|BAG04883.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843] Length = 73 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 ++ + + ++ E LT LA + G+ + + + E R T + + L Sbjct: 2 ELGQRMQKLRENAGLTQRKLAERLGVTVQTVSNWETGHREPRMNPSQTLKLCQSLNC 58 >gi|241661721|ref|YP_002980081.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240863748|gb|ACS61409.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 194 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/123 (9%), Positives = 37/123 (30%), Gaps = 8/123 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTE 56 H++I + + + + L+ LA ++ + ++ + +R R Sbjct: 1 MDIHQRIAQRLRELRDAQGLSLDALAERSQVSRSAISLIERGQSSPTAAVLDRLSSALGV 60 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY--FPPSGSGGFFDSGVFPTGNK 114 ++ + + + + + + + P + S FP G + Sbjct: 61 TLASLFEDSAAPAAEPSPVSRAAEQPEWTDPASGYVRRNLSPAARSPLQLVEVHFPPGER 120 Query: 115 WNT 117 Sbjct: 121 VAY 123 >gi|322378039|ref|ZP_08052526.1| putative transcriptional regulator [Streptococcus sp. M334] gi|321281021|gb|EFX58034.1| putative transcriptional regulator [Streptococcus sp. M334] Length = 71 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 17/41 (41%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 ++ + + R L + LA+ AG+ + + +R Sbjct: 5 QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYTP 45 >gi|298375961|ref|ZP_06985917.1| GIY-YIG catalytic domain-containing protein [Bacteroides sp. 3_1_19] gi|298266998|gb|EFI08655.1| GIY-YIG catalytic domain-containing protein [Bacteroides sp. 3_1_19] Length = 747 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 29/114 (25%), Gaps = 20/114 (17%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL-------LIK 174 + + + + + SM P GD + + G + Sbjct: 626 GWIKVSNLGKLDKNMFVVQAKGNSMEPTIHDGDYCVFRANPVGSRQGKIVLTQHINFYDG 685 Query: 175 PRTGDIVAKVLISR---------RGRSIDLMSLNCCYPVDTVEM---SDIEWIA 216 G+ K S I L N Y +++ ++ + I Sbjct: 686 DNVGNYSIKTYTSLKKYSETGEWEHEKIVLEPKNKDYKSISIDNVDCNEFKVIG 739 >gi|294852923|ref|ZP_06793596.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026] gi|294821512|gb|EFG38511.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026] Length = 470 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 4 FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI+ I R+ LT + +A G+ P+ N +R R + + + K+ Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55 Query: 62 L 62 Sbjct: 56 A 56 >gi|288905901|ref|YP_003431123.1| transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] gi|288732627|emb|CBI14199.1| putative transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] Length = 117 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 5/75 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ + NLT LA+ + +R R P E+I I N + Sbjct: 4 KRLKKLRKEANLTQQELAKNLNVSQQIIGLWERGE-----RKPKIEAINNIAKYFNVSTE 58 Query: 71 QLLDLPFSDGRTTEK 85 L + ++ Sbjct: 59 YLQGKTDNKEIEEDE 73 >gi|15903970|ref|NP_359520.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|149011979|ref|ZP_01833127.1| hypothetical protein CGSSp19BS75_02943 [Streptococcus pneumoniae SP19-BS75] gi|303259622|ref|ZP_07345598.1| hypothetical protein CGSSp9vBS293_08359 [Streptococcus pneumoniae SP-BS293] gi|303262067|ref|ZP_07348012.1| hypothetical protein CGSSp14BS292_05459 [Streptococcus pneumoniae SP14-BS292] gi|15459626|gb|AAL00731.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|147763934|gb|EDK70867.1| hypothetical protein CGSSp19BS75_02943 [Streptococcus pneumoniae SP19-BS75] gi|302636707|gb|EFL67197.1| hypothetical protein CGSSp14BS292_05459 [Streptococcus pneumoniae SP14-BS292] gi|302639174|gb|EFL69633.1| hypothetical protein CGSSpBS293_08359 [Streptococcus pneumoniae SP-BS293] Length = 71 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 5 QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYT-----PSIIIALKISQIFNE 59 Query: 68 T 68 T Sbjct: 60 T 60 >gi|94313728|ref|YP_586937.1| putative DNA-binding transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357580|gb|ABF11668.1| putative DNA-binding transcriptional regulator, Helix-turn-helix motif [Cupriavidus metallidurans CH34] Length = 203 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/122 (10%), Positives = 36/122 (29%), Gaps = 7/122 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + A+ + + L+ L+R+AG+ + ++ +R P+ +++ Sbjct: 13 MTAEGPPAVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWR 67 Query: 61 ILAATNETICQL--LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + A ++ P G ++ Sbjct: 68 LANALGVSLTDFLAQGTAAPQAPAITVVPPHATPALKSPDTRCELRILGPIDMAGRFEWY 127 Query: 119 GV 120 + Sbjct: 128 EL 129 >gi|319936780|ref|ZP_08011192.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] gi|319808048|gb|EFW04620.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] Length = 191 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 +K+ + I R+ + LT LA + G+ + +K +R Sbjct: 4 QKVGDLIYRLRKEKQLTQKELANQIGISDKTISKWERGLG 43 >gi|261419589|ref|YP_003253271.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297530435|ref|YP_003671710.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|319766405|ref|YP_004131906.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261376046|gb|ACX78789.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|297253687|gb|ADI27133.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] gi|317111271|gb|ADU93763.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 97 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 5/72 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ++ N++ LA + G+ ++ + + P E++FKI A N Sbjct: 26 IAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLT-----SPRVETLFKISQALNTP 80 Query: 69 ICQLLDLPFSDG 80 Sbjct: 81 FIIDGTSRQDHN 92 >gi|288572784|ref|ZP_06391141.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568525|gb|EFC90082.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 3/133 (2%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R+ + T LA + G+ T+ ++ + S+ K L + I Sbjct: 7 LKRLRKEKGWTQQDLASRVGVTKTTILDWEKDRYS--PVGQNLISLAKALNVSAAFIMGE 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNTVGVPEIRSPHNGIY 131 + P G + E + L S + P + + Sbjct: 65 TNDPSPQGTGKKAPEGVLRYLRDQTGLSLDEAAALIDLPAEDLELMEQYEDRADDTLKQK 124 Query: 132 AIQTQDTRHKTQD 144 I+ +D Sbjct: 125 LIKAYGRYLSARD 137 >gi|94264573|ref|ZP_01288358.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|94265496|ref|ZP_01289245.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|94270188|ref|ZP_01291673.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93450906|gb|EAT01913.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453984|gb|EAT04328.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93454991|gb|EAT05225.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 95 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +AI +T + +A + G P + + + + G+ PS ++ K Sbjct: 29 MPML------DAILNARAEAGMTQAQVAERMGTKPPAVARLENSLVTGK-HSPSVATLQK 81 Query: 61 ILAATN 66 AA Sbjct: 82 YAAALG 87 >gi|300718357|ref|YP_003743160.1| transcriptional regulator, XRE family protein [Erwinia billingiae Eb661] gi|299064193|emb|CAX61313.1| Transcriptional regulator, XRE family protein [Erwinia billingiae Eb661] Length = 72 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 7/70 (10%) Query: 1 MTSFSHKKIW--EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + K+ + + ++ + L+ A K GLD T + +R R P+ E I Sbjct: 1 MEKLNTTKVLFGKRVKQLRLQAGLSQEAFAHKCGLDRTYVSGIERG-----LRNPTLEVI 55 Query: 59 FKILAATNET 68 + Sbjct: 56 AILAKGLGIE 65 >gi|284048419|ref|YP_003398758.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] gi|283952640|gb|ADB47443.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] Length = 97 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I AI +LT LA KAG+ T ++ + R PS + + ++ Sbjct: 29 NIIRAIVDARINQHLTQKELAAKAGIAQTEISRIENGT-----RNPSLKILQRLAEGMGM 83 >gi|218133469|ref|ZP_03462273.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC 43243] gi|217990844|gb|EEC56850.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC 43243] Length = 143 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 TS +H++I I + E ++++ + LA L + + + R S ESI +I Sbjct: 22 TSVNHRQIGYRIKEVRELNHISQAQLAEMTDLSVSYISHIENA-----KRKASLESIIRI 76 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A T+ +LL + + + ++ + Sbjct: 77 VNALGITVDELLAGVQMNNPAAYQTDIDMLME 108 >gi|254173699|ref|ZP_04880371.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] gi|214032391|gb|EEB73221.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] Length = 65 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E LT LA+ G+ + ++ + PS FKI I Sbjct: 3 NRLRELREARGLTQEELAKALGVTRQTIIAIEKGKYD-----PSLRLAFKIARFFGAKIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DIFIYDG 64 >gi|168214025|ref|ZP_02639650.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] gi|170714494|gb|EDT26676.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] Length = 204 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I E+ ++ S LAR+ G+ P K + PS E KI + Sbjct: 2 NLNEKITFYREKKGISKSQLAREIGVSPAYITKLENGEKS----NPSLELKIKIANVLEQ 57 Query: 68 T 68 Sbjct: 58 P 58 >gi|169343406|ref|ZP_02864410.1| regulator SinR [Clostridium perfringens C str. JGS1495] gi|169298492|gb|EDS80578.1| regulator SinR [Clostridium perfringens C str. JGS1495] Length = 204 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I E+ ++ S LAR+ G+ P K + PS E KI + Sbjct: 2 NLNEKITFYREKKGISKSQLAREIGVSPAYITKLENGEKS----NPSLELKIKIANVLEQ 57 Query: 68 T 68 Sbjct: 58 P 58 >gi|311107907|ref|YP_003980760.1| hypothetical protein AXYL_04732 [Achromobacter xylosoxidans A8] gi|310762596|gb|ADP18045.1| helix-turn-helix family protein 10 [Achromobacter xylosoxidans A8] Length = 184 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 15/174 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H + + + L+ LA++ GL + +K +R E PS ++ + Sbjct: 1 MIDLPH-----RLRALRRQQTLSLEQLAQRTGLTKSYLSKLERGLSE-----PSISTVLR 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A + +L+ + + G G + K + Sbjct: 51 LAEAYGLGVSELVGTDDAAQEEVVSVVRVADREALQRRGLGSEYHYESLAGRRKVKAME- 109 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNCGDRLLI 173 P + P L + + + + +++ GD + Sbjct: 110 PFVVHPPREF---PDATAVFPHPGEEFLLVLKGAIEVHVGERQLRLEAGDSVYF 160 >gi|296452644|ref|ZP_06894337.1| DNA-binding protein [Clostridium difficile NAP08] gi|296880944|ref|ZP_06904891.1| DNA-binding protein [Clostridium difficile NAP07] gi|296258525|gb|EFH05427.1| DNA-binding protein [Clostridium difficile NAP08] gi|296428057|gb|EFH13957.1| DNA-binding protein [Clostridium difficile NAP07] Length = 364 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 58/198 (29%), Gaps = 14/198 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + +T LA G+ S +K + + + ++ N Sbjct: 5 NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQS-----YLDITFLPQLATYFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T+ +L+ + K F FD + Sbjct: 60 TVDELICYEPQMMKEDINKLYNKLCKDFTAK----PFDEVMIEIREIIKRYYSCFPLIFR 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 G+ + D + L + + + N D + + + +L++ Sbjct: 116 MGLLIVNHYDI---VDEKKRELLIDEALEIFIRIQETCNDIDIC-RQAKNMEATCYILLN 171 Query: 188 RRGRSIDLMSLNCCYPVD 205 + + IDL+ N +P+ Sbjct: 172 QPIQVIDLLQ-NSNFPMI 188 >gi|253990606|ref|YP_003041962.1| regulatory protein DicA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782056|emb|CAQ85220.1| similar to dica, regulator of dicb encoded by prophage cp-933 (putative regulatory protein) [Photorhabdus asymbiotica] Length = 135 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 6/91 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIFKI 61 +++ I I R+ + ++ + LA G S + R ST+ + Sbjct: 1 MKTNESIGARIKRLRNQQKMSQAALAELCGWASQSRIGNYESGI-----RNVSTDDAVIL 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 A + +L+ + E E L Sbjct: 56 SKALGVSPAELMFGDAESSQENETSETCQEL 86 >gi|227519526|ref|ZP_03949575.1| possible transcriptional repressor [Enterococcus faecalis TX0104] gi|257090868|ref|ZP_05585229.1| predicted protein [Enterococcus faecalis CH188] gi|312902504|ref|ZP_07761710.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227072975|gb|EEI10938.1| possible transcriptional repressor [Enterococcus faecalis TX0104] gi|256999680|gb|EEU86200.1| predicted protein [Enterococcus faecalis CH188] gi|310634174|gb|EFQ17457.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579687|gb|EFU91878.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 162 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 F + + E I R+ NLT LA K GL + NK ++ +E R E + K Sbjct: 11 FKIETMGERIKRLRLEKNLTQEELASKFGLKRAAINKYEKGNVENMKRSV-IEDMSKFF 68 >gi|163797612|ref|ZP_02191561.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199] gi|159177087|gb|EDP61649.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199] Length = 125 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 A+ E L+ S LA +AGL ++ + +G Sbjct: 67 SALRVWREHRGLSASELAERAGLSQAYVSQLETGKRDG 104 >gi|123442034|ref|YP_001006017.1| putative UV protection and mutation protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088995|emb|CAL11808.1| putative uv protection and mutation protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 137 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 8/109 (7%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171 + + + + + S++ G +L+++ ++ GD + Sbjct: 26 AAQDYIE--KRIDINEHCIVHPAATFFMTAEGESLIAAGIHHGALLVIDRSLPAKHGDIV 83 Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218 + G+ K L R + L +LN P + D+ I Sbjct: 84 V-ATIGGEFSIKRLYLRP--TPRLEALNAGTPALILCEGDEDLVIFGVI 129 >gi|186473005|ref|YP_001860347.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195337|gb|ACC73301.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 199 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 11/171 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTE 56 H I + + + H L+ LA ++G+ ++ + +R + Sbjct: 4 MDIHSLIARRVRELRDGHGLSLEALAERSGVSRSNISLIERARSSPTAAVLDKLATALGV 63 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF--PPSGSGGFFDSGVFPTGNK 114 ++ + A + L + + + + P S FP G + Sbjct: 64 TLASLFEAPAPSAQTPSPLSRAATQAVWTDPESGYVRRTLSPEQPSPLQLVEVHFPAGQR 123 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 H I+ I+ + GD + + V Sbjct: 124 VAYETGARDAEIHQQIWLIEG---AMEIGAGDQHWRLEPGDCVTMRLDCPV 171 >gi|260431832|ref|ZP_05785803.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260415660|gb|EEX08919.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 184 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 47/149 (31%), Gaps = 18/149 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ ++ + + LAR +G+ + ++ ++ + P+ E++ ++ AA Sbjct: 7 DRLARHLNDLRHGRGWSLEQLARASGISRATLSRMEKAEV-----SPTAENLGRLCAAYG 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKW 115 + +LL + E++I + P +G G P G Sbjct: 62 LPMSRLLMMVEDSFDPKVPLERQIEWRDPETGFTRRSVSPPSAGLTGEVLECHLPPGTTI 121 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 P H+ + Sbjct: 122 TYDAPPRPGQEHH--LIVLDGALTLTVDG 148 >gi|225016323|ref|ZP_03705515.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] gi|224950928|gb|EEG32137.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] Length = 119 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ S + I + ++ ++ LA KA L + +R + P+ +++ Sbjct: 7 MSELSR-VLGSRIRTLRQQKGMSQEELAFKASLSAAHLGQIERA-----LKNPTVDTVSH 60 Query: 61 ILAATNETICQLLDLPFSDGRTTE 84 I A T+ QL Sbjct: 61 IADALGITVDQLFQFDLPKQEREN 84 >gi|297203878|ref|ZP_06921275.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|197713065|gb|EDY57099.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 194 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 48/172 (27%), Gaps = 22/172 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + LA ++G+ ++ ++++R I P+ + ++ Sbjct: 14 RLGVRLAELRAERGWSLGELAERSGVSKSTLSRAERAEI-----SPTASLLNRLCGVYGR 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNK 114 T+ QLL ++ ++ + G G G Sbjct: 69 TMSQLLSEIEAEAEPAPLVRSAGQPVWEDRAAGFVRRSVSPPHPGLRGELVEGRLAAGAD 128 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 P + I+ ++ + GD L L Sbjct: 129 LAY-DRPPVPGLEQHIWVLEG---ALDVTAQDVEHHLDTGDCLRLRVWGPTR 176 >gi|254168446|ref|ZP_04875290.1| CBS domain pair protein [Aciduliprofundum boonei T469] gi|197622501|gb|EDY35072.1| CBS domain pair protein [Aciduliprofundum boonei T469] Length = 184 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 11/73 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S +I +R T LA ++G+ ++ K ++ + PS K Sbjct: 2 MPSLS------SIKERRKRLGWTQKELAERSGVSQSAITKIEKGDMN-----PSYTLAVK 50 Query: 61 ILAATNETICQLL 73 I A +E + Sbjct: 51 IFNALDEGEREKY 63 >gi|254385553|ref|ZP_05000879.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194344424|gb|EDX25390.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 126 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + + L+ LA AG+ ++ +R R PS + + + Sbjct: 1 MASLNVGNLGEYLREQRRQAQLSLRQLAEAAGVSNPYLSQIERG-----LRKPSADILQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L + + ++ Sbjct: 56 LAKALRISAETLYVQAGILDERDPDEVETRAVI 88 >gi|149185489|ref|ZP_01863805.1| DNA-binding protein, putative [Erythrobacter sp. SD-21] gi|148830709|gb|EDL49144.1| DNA-binding protein, putative [Erythrobacter sp. SD-21] Length = 242 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H+ + I R+ T GLA G+ + K + G + R R + + + K L Sbjct: 126 HETLGTRIKRLRTTRGFTMCGLAESVGVSKPTLWKWE--GDQVRPRHETMQRLAKQLD 181 >gi|15901934|ref|NP_346538.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|182685055|ref|YP_001836802.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|14973631|gb|AAK76178.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|182630389|gb|ACB91337.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] Length = 71 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 5 QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYT-----PSIIIALKISQIFNE 59 Query: 68 T 68 T Sbjct: 60 T 60 >gi|315652455|ref|ZP_07905442.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315485293|gb|EFU75688.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 177 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 33/150 (22%), Gaps = 16/150 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + R+ LT LA +A L ++ + PS ++ IL Sbjct: 2 DIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENNIT-----SPSIATLLDILQCLGV 56 Query: 68 TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I +K+ P + Sbjct: 57 QIKDFFDEETETQVVFTEEDYFIKEDKELNNTVKWIIPNAQKNMMEPILQIIEPGGLTYP 116 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 P Y + H+ D + Sbjct: 117 DNP--HDGEEFGYILSGSVEIHRGNDMYVA 144 >gi|256380271|ref|YP_003103931.1| phage repressor [Actinosynnema mirum DSM 43827] gi|255924574|gb|ACU40085.1| putative phage repressor [Actinosynnema mirum DSM 43827] Length = 109 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL--IKPRTGDIVAKVLISRRGRSIDLM 196 K + SM P R GD++ + GD +L R G + K + G + Sbjct: 4 MLKVRGPSMHPTVRTGDLVSVAHGRPPRAGDVVLVRWAHRPGQLSVKRAVRVDGTGWHVE 63 Query: 197 SLNCCYPVDTVEMSDIEWIARI---LW 220 N D+ E+ E + + +W Sbjct: 64 GDNPFASTDSRELGPAEVLGVVRFRVW 90 >gi|313624590|gb|EFR94572.1| DNA-binding protein [Listeria innocua FSL J1-023] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|308186861|ref|YP_003930992.1| hypothetical protein Pvag_1353 [Pantoea vagans C9-1] gi|308057371|gb|ADO09543.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 82 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + +R+ T S LA+K GL + + + S ++FK+L A Sbjct: 7 QLANRLKLIRQRNGWTQSELAKKVGLKQATISHFENA-----PDSTSLATLFKLLQALEV 61 Query: 68 T 68 + Sbjct: 62 S 62 >gi|291526522|emb|CBK92109.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 190 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + KKI + + + +T A + + ++ + P + I Sbjct: 1 MNQKKIGSFLKELRKEKGITQEEFAENLNVSGRTVSRWETGVN-----MPDISLLVDIAE 55 Query: 64 ATNETICQ 71 N +I + Sbjct: 56 FFNVSIPE 63 >gi|218133061|ref|ZP_03461865.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] gi|217991934|gb|EEC57938.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] Length = 225 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +KI I + +T LA K G+ + +K + P + + Sbjct: 1 MDQEKIGRFIAETRNQAGMTQKELAGKIGISDKTISKWECGKS-----MPDITYLETLCD 55 Query: 64 ATNETICQ 71 + ++ + Sbjct: 56 SLAISMNE 63 >gi|217965105|ref|YP_002350783.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290893768|ref|ZP_06556748.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|217334375|gb|ACK40169.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290556717|gb|EFD90251.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|307570335|emb|CAR83514.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes L99] gi|313609965|gb|EFR85345.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|182440037|ref|YP_001827756.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780706|ref|ZP_08239971.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] gi|178468553|dbj|BAG23073.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661039|gb|EGE45885.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] Length = 190 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 18/139 (12%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ + + + R T LA +AG+ + ++ PS + Sbjct: 1 MSDLDQLTQSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTN-----PSVGTT 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSG 107 K+ A +I LLD + + + + + + Sbjct: 56 VKLADALGVSITTLLDHEEGAQVRLVPESRAVRMWSTEAGSSTTLLVGAEARGPLELWTC 115 Query: 108 VFPTGNKWNTVGVPEIRSP 126 G + PE Sbjct: 116 RLVAGEGTTSDPHPEGTVE 134 >gi|16799870|ref|NP_470138.1| hypothetical protein lin0796 [Listeria innocua Clip11262] gi|16413247|emb|CAC96028.1| lin0796 [Listeria innocua Clip11262] gi|313619917|gb|EFR91474.1| DNA-binding protein [Listeria innocua FSL S4-378] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|313667112|gb|ADR73004.1| C.BspHIP [Bacillus sp. H(2010)] Length = 71 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + + ++ LA+++ + T + + + PS I KI N Sbjct: 7 ESLGSKIKILRKSRGVSQEDLAKQSEITRTYLTQIENGKVN-----PSIGKIKKISENLN 61 Query: 67 ETICQLL 73 ++C++ Sbjct: 62 ISLCEMF 68 >gi|251790167|ref|YP_003004888.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538788|gb|ACT07409.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 77 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + L+ A K GLD T + +R R P+ E I I Sbjct: 15 RFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGV-----RNPTLEVIGVIADGLE 68 >gi|251788780|ref|YP_003003501.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537401|gb|ACT06022.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 72 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + L+ A K GLD T + +R R P+ E I I Sbjct: 10 RFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGV-----RNPTLEVIGVIADGLE 63 >gi|239815237|ref|YP_002944147.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801814|gb|ACS18881.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S +I + + +++ LA+ +G+ + ++ +R + PS E++ + Sbjct: 1 MRSLSAVRIGTQVRALRMAADVSGGELAKTSGISASMLSRIERGLV-----SPSVETLER 55 Query: 61 ILAATN 66 + Sbjct: 56 LANGLG 61 >gi|154496785|ref|ZP_02035481.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC 29799] gi|150274037|gb|EDN01137.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC 29799] Length = 94 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I R+ E + S LA+K + ++ N + P+T+ + I + Sbjct: 2 IGDTIKRLREDAGFSQSALAKKLNVTRSAVNAWEMGLSV-----PTTQYVVDIAKLFRVS 56 >gi|83589232|ref|YP_429241.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572146|gb|ABC18698.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 100 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ A+ ++ + LT LA+K G+ + ++ + PS S+ KI Sbjct: 30 QVARAVIKLRLDYGLTQEELAQKTGVPQSVISRLESG-----RHLPSLRSLEKISKKLG 83 >gi|329668140|gb|AEB94088.1| hypothetical protein LJP_1772 [Lactobacillus johnsonii DPC 6026] Length = 161 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 43/163 (26%), Gaps = 16/163 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I R+ + +NLT +A+K + + + + P E I I ++ Sbjct: 5 EQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRN-----LPDFEMIILIAETFGVSLD 59 Query: 71 QLLDLPFSDGRTTE---------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 +L+ + + + K + S +G + + Sbjct: 60 ELILGDKKMNKIEQTLINDGKRSRAAKFNMVTTIIGSAFIILGIIFFLISGASVSYID-- 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 H + I ++ L + Sbjct: 118 SNGFLHENFFLIPLGYLSLFVGTVIIIARVINSICLAIKERKN 160 >gi|329936216|ref|ZP_08286009.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] gi|329304326|gb|EGG48206.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] Length = 196 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + E + L+ LA AG+ ++ +R R PS + + + Sbjct: 1 MATLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSADVLQQ 55 Query: 61 ILAATNET 68 + A + Sbjct: 56 VAKALRIS 63 >gi|312868183|ref|ZP_07728385.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096288|gb|EFQ54530.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 158 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + HNLT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGENIKTLRKAHNLTQPEFAKIVGISRNSLSRYENGAS-----SVSTELIDRICQKFNVS 56 Query: 69 ICQ 71 Sbjct: 57 YID 59 >gi|304439932|ref|ZP_07399826.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371671|gb|EFM25283.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 138 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + I + + ++ LA K G+ + +K + Sbjct: 2 NLSDRIRELRKIKGISQDELAEKLGVSRQAISKWENEQSIP 42 >gi|251779375|ref|ZP_04822295.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083690|gb|EES49580.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 115 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + E + + + LT LA + G ++ +R P E++ KI Sbjct: 1 MIKSVQFKERLVTLRKEKGLTQYDLATQLGFSRGQIGNYEQG-----SREPDQETLLKIA 55 Query: 63 AATNET 68 N + Sbjct: 56 KFFNVS 61 >gi|227530573|ref|ZP_03960622.1| bacteriophage transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227349511|gb|EEJ39802.1| bacteriophage transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 101 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I +A +H +T + L RK G+ +K R P TE++ K+ + Sbjct: 2 NLADRIKDLANKHGITIAELERKTGISNGQISKW-------NVRSPKTENLEKVANYFHV 54 Query: 68 T 68 + Sbjct: 55 S 55 >gi|157150523|ref|YP_001450843.1| transcription regulator, -related protein [Streptococcus gordonii str. Challis substr. CH1] gi|262283141|ref|ZP_06060908.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|157075317|gb|ABV10000.1| transcription regulator, probable -related protein [Streptococcus gordonii str. Challis substr. CH1] gi|262261393|gb|EEY80092.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 67 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + R L + LAR+A + + + +R PS KI E Sbjct: 2 KLKNRLKELRARDGLNQTELARRAEVSRQTISLLERGEYT-----PSIIIALKIAHIFGE 56 Query: 68 TICQLLDLPF 77 T+ + + Sbjct: 57 TVENVFRIEE 66 >gi|313899162|ref|ZP_07832684.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956040|gb|EFR37686.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + + LA K G++ S +K +R +P+ +++ KI+ + T Sbjct: 6 LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLN-----YPAYDTLEKIMEVLDVT 60 Query: 69 ICQLLDLPFSDGRTTEKKE 87 +LL + EK+ Sbjct: 61 PNELLSGEWKYINQAEKEV 79 >gi|262282955|ref|ZP_06060722.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261207|gb|EEY79906.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 121 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 4/72 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + + ++ L+ + G+ ++ + ++ IE E + KI N Sbjct: 2 NVGERIKQRRKELKMSADALSERVGVSRSTIFRYEKGDIEKV----GPEVLKKIADTLNI 57 Query: 68 TICQLLDLPFSD 79 + QL+ + Sbjct: 58 SPAQLMGWEEQN 69 >gi|300768444|ref|ZP_07078344.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493962|gb|EFK29130.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 68 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I ++ + T + LA AG+ ++ N + + + K + T Sbjct: 2 IGSEIKKIRSKLGWTQAKLADAAGVSQSTVNTLENRTK--HPDAVTLNLLAKAMGVT 56 >gi|295835325|ref|ZP_06822258.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] gi|197696396|gb|EDY43329.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] Length = 187 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/132 (9%), Positives = 37/132 (28%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + + +T + L+ G+ ++ ++ + R P+ E + + A Sbjct: 4 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESG-----LRRPTLELLLPLARAHRVA 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ + P + P + Sbjct: 59 LDELVGTRPVADPRVRAEPIVRHQRRMYPLSRHPGGVQAYRMIIEGGSREPDPRTHEGYE 118 Query: 129 GIYAIQTQDTRH 140 +Y + + Sbjct: 119 WMYVLHGRLRLV 130 >gi|152970487|ref|YP_001335596.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894976|ref|YP_002919710.1| putative regulator [Klebsiella pneumoniae NTUH-K2044] gi|262044571|ref|ZP_06017627.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330003723|ref|ZP_08304741.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|150955336|gb|ABR77366.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547292|dbj|BAH63643.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038115|gb|EEW39330.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536860|gb|EGF63164.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 189 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/124 (9%), Positives = 36/124 (29%), Gaps = 8/124 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + ++ + S LA + G+ + +R P+ +++KI N Sbjct: 5 QHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLN 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEI 123 + S + +++ ++ G + + Sbjct: 60 VPFSAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKG 119 Query: 124 RSPH 127 H Sbjct: 120 VIEH 123 >gi|7715980|gb|AAF68232.1|AF203972_5 unknown [Shuttle vector pBA] Length = 238 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 22/160 (13%) Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 ++++ + + + G +P I Sbjct: 6 NNTPQYNEATPIQQDVVYIPLVNQFAYAGYLDGYTDASYMEQLPKIPFIVDKEG-----H 60 Query: 135 TQDTRHKTQDTSM----LPLYRKGDILILNSAIQV---------NCGDRLLIKPRTGDIV 181 + + SM Y +GD L D +++ T I+ Sbjct: 61 GNYIAFEVKGDSMNNGTEESYLEGDRLYCREIAPYLWATSKLHLRKWDFVIV--HTDGII 118 Query: 182 AKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 K +I +I + SLN YP +++ D++ I ++ Sbjct: 119 VKRIIDHDVENHTITIHSLNDMYPDRVIDLCDVKQIFNVI 158 >gi|11138961|gb|AAG31560.1| SgraIC control protein [Streptomyces griseus] Length = 79 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 8/80 (10%) Query: 1 MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M SH + A+ + R + L+ K+GLD T + +R R P+ ++ Sbjct: 1 MPDLCSH--LGLAVRAVRLRRGWSQELLSEKSGLDRTYVSGLERG-----RRNPALLTLA 53 Query: 60 KILAATNETICQLLDLPFSD 79 ++ A + +L+ + Sbjct: 54 RLADALEVPLSELIRDAEEN 73 >gi|323519724|gb|ADX94105.1| hypothetical protein ABTW07_3688 [Acinetobacter baumannii TCDC-AB0715] Length = 182 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L++ P + + + + + + + P Sbjct: 61 IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + + + ++L L + L + GD + K + Sbjct: 120 LSEPHPVGSVEHIIVVEGRALLGLIDEAVELGV--------GDYICYPADQ-----KHIF 166 Query: 187 S--RRGRSIDLMSL 198 G L+S Sbjct: 167 RALETGTKALLISE 180 >gi|270261929|ref|ZP_06190201.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] gi|270043805|gb|EFA16897.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] Length = 189 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 AI R ER L+ + LAR+AG+ ++ ++ + PS E+++ + A + + Sbjct: 17 AAIRRERERLGLSVTELARRAGIAKSTLSQLETGSGN-----PSLETLWSLAMALDVPVS 71 Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92 +L+ P + E + Sbjct: 72 RLISQPRQHVQVIRANEGVTTV 93 >gi|184159797|ref|YP_001848136.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183211391|gb|ACC58789.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509710|gb|ADX05164.1| transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 182 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L++ P + + E + + + + P Sbjct: 61 IPFARLMEEPSNQVQVIRCGEGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + + + +++ L + L + GD + K + Sbjct: 120 LSEPHPVGSVEHIIVVEGRALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166 Query: 187 S--RRGRSIDLMSL 198 G L+S Sbjct: 167 RALETGTKALLISE 180 >gi|315302119|ref|ZP_07873074.1| DNA-binding protein [Listeria ivanovii FSL F6-596] gi|313629507|gb|EFR97685.1| DNA-binding protein [Listeria ivanovii FSL F6-596] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|315281473|ref|ZP_07870091.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313614873|gb|EFR88399.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|311031859|ref|ZP_07709949.1| transcriptional regulator SinR [Bacillus sp. m3-13] Length = 124 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 7/112 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + R+ + + S L+ AG+ + + +R PS + + KI Sbjct: 2 LGERLKRLRKVKGYSLSELSELAGVSKSYLSYLERNIQT----NPSLQFLNKIAVTLETD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + LL+ + + + E + + G + + Sbjct: 58 LDFLLNGESDNDKPDVQVLDEEWRRLVQRAIAEGLSKEDFI---HFKEYMEF 106 >gi|310287452|ref|YP_003938710.1| helix-turn-helix motif [Bifidobacterium bifidum S17] gi|311064368|ref|YP_003971093.1| hypothetical protein BBPR_0984 [Bifidobacterium bifidum PRL2010] gi|309251388|gb|ADO53136.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum S17] gi|310866687|gb|ADP36056.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum PRL2010] Length = 161 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 7/147 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT--N 66 I + I + E LT S A + + + ++ ++ E PS + I I Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAE-----PSIDMIRLISTRFEVP 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + P G + + + G + Sbjct: 58 MARLMEMPDNGFCQSCAMPFYRPEDHGTEPDGTRSGDYCNYCYDDGVFLQDYANSDELVA 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRK 153 ++ + + M L Sbjct: 118 ACAPMMAESCHISVEQAEDCMSALLPN 144 >gi|289434068|ref|YP_003463940.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170312|emb|CBH26852.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638856|gb|EFS03917.1| DNA-binding protein [Listeria seeligeri FSL S4-171] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|254828889|ref|ZP_05233576.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|255028672|ref|ZP_05300623.1| transcription regulator, putative [Listeria monocytogenes LO28] gi|258601302|gb|EEW14627.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] Length = 157 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|238059739|ref|ZP_04604448.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881550|gb|EEP70378.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 206 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 10/141 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ +R +T + LA + G+ ++ ++ + R P+ E + + Sbjct: 15 RTLDAVGPRLKQLRQRREITLADLADETGISTSTLSRLEAG-----LRRPTLEQLLPLAR 69 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEI----PLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 A ++ +L+D P + + +L G V P G+ Sbjct: 70 AYGVSLDELVDAPATGNPRINLRPIACGDGSTILPLTRRPGGIQAYKFVLPRGDDDAEPD 129 Query: 120 VPEIRSPHNGIYAIQTQDTRH 140 + ++ Y + Sbjct: 130 L-RTHEGYDWAYVLNGTLRLV 149 >gi|167752709|ref|ZP_02424836.1| hypothetical protein ALIPUT_00969 [Alistipes putredinis DSM 17216] gi|167659778|gb|EDS03908.1| hypothetical protein ALIPUT_00969 [Alistipes putredinis DSM 17216] Length = 210 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 29/216 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 W ++R+ E LT + AR GL + + KR S KI A + Sbjct: 9 WRRLERVIESSGLTINSFARYVGLPRGENLYQIKRGNY-----GVSLGVAKKIHAKFPQY 63 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L ++ + G P + P P Sbjct: 64 PISWLMHGEAE----------------SAATPEGDAFVVRIPVYRDSSVAEFPPKEVPER 107 Query: 129 GIYAIQTQDTRHKT---QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + D + + +L+ +V G R+ + + Sbjct: 108 YLLLSAEEARGAQIALCTDDQFGTVLQHWLVLLREPDGEVING-RVYFVMTECFYLFCSV 166 Query: 186 ISRRGR--SIDLMSL-NCCYPVDTVEMSDIEWIARI 218 G + L SL V +I + + Sbjct: 167 YRIEGDPARLRLKSLFATADDDLEVRCEEICVMWPV 202 >gi|170719775|ref|YP_001747463.1| transcriptional regulator [Pseudomonas putida W619] gi|169757778|gb|ACA71094.1| transcriptional regulator [Pseudomonas putida W619] Length = 233 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 57/230 (24%), Gaps = 26/230 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + LT S A + G+ P N + R + ++ Sbjct: 5 GDRLKALLHECGLTSSDFAAQRGVTPQHINNWFK-------RGVPLARLDELADLFCVHR 57 Query: 70 CQLLDLPFSDGRTT--EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---------TV 118 L ++ P S S P + + Sbjct: 58 RWLRCGEGPKHPSSILHSCALPPASDNSPSSLSTQATRLLQVPFQQVHDGKLVALDGKYL 117 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 +P G+ + +M PL + IL ++ + G Sbjct: 118 QLPIEALQALGV--ATENVVCLAMPNQNMTPLVPRDAILAIDVSQTQVKDGETYALLHNG 175 Query: 179 DIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222 + L ++ L S Y V+ + ++ + + S Sbjct: 176 TLRVNSLSLGHKGTLCLHSHDRRNYTVERFTPAQRQAQHLKILGWVFHWS 225 >gi|116872182|ref|YP_848963.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741060|emb|CAK20180.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|108797622|ref|YP_637819.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119866709|ref|YP_936661.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126433246|ref|YP_001068937.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108768041|gb|ABG06763.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119692798|gb|ABL89871.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126233046|gb|ABN96446.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 161 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I E ++ LA KAG+ ++ +R R PS + + +I A Sbjct: 16 QDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRKPSADVLNQIAKALR 70 Query: 67 ET 68 + Sbjct: 71 VS 72 >gi|46907036|ref|YP_013425.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|226223423|ref|YP_002757530.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823927|ref|ZP_05228928.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|254931186|ref|ZP_05264545.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|254993305|ref|ZP_05275495.1| transcription regulator [Listeria monocytogenes FSL J2-064] gi|255521055|ref|ZP_05388292.1| transcription regulator [Listeria monocytogenes FSL J1-175] gi|46880302|gb|AAT03602.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|225875885|emb|CAS04589.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293582734|gb|EFF94766.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|293593153|gb|EFG00914.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|328467356|gb|EGF38436.1| transcription regulator [Listeria monocytogenes 1816] gi|332311210|gb|EGJ24305.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|16802848|ref|NP_464333.1| hypothetical protein lmo0806 [Listeria monocytogenes EGD-e] gi|224499672|ref|ZP_03668021.1| hypothetical protein LmonF1_08239 [Listeria monocytogenes Finland 1988] gi|224501890|ref|ZP_03670197.1| hypothetical protein LmonFR_05157 [Listeria monocytogenes FSL R2-561] gi|254830206|ref|ZP_05234861.1| hypothetical protein Lmon1_02557 [Listeria monocytogenes 10403S] gi|254899023|ref|ZP_05258947.1| hypothetical protein LmonJ_04380 [Listeria monocytogenes J0161] gi|254911489|ref|ZP_05261501.1| DNA-binding protein [Listeria monocytogenes J2818] gi|254935815|ref|ZP_05267512.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255026637|ref|ZP_05298623.1| hypothetical protein LmonocytFSL_10420 [Listeria monocytogenes FSL J2-003] gi|284801136|ref|YP_003413001.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284994278|ref|YP_003416046.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|16410195|emb|CAC98884.1| lmo0806 [Listeria monocytogenes EGD-e] gi|258608402|gb|EEW21010.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056698|gb|ADB67639.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284059745|gb|ADB70684.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|293589432|gb|EFF97766.1| DNA-binding protein [Listeria monocytogenes J2818] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|47093927|ref|ZP_00231665.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47017687|gb|EAL08482.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] Length = 194 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 16 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 70 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 71 TPKDFFDEEEHNQKVIYGELEH 92 >gi|325568656|ref|ZP_08144949.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157694|gb|EGC69850.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 139 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 4/75 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + + LA K G+ ++ + ++ IE TE + K+ + N Sbjct: 2 EVGERIKQRRKELGYNADYLASKLGVSRSTIFRYEKGEIEKLP----TEVLEKLAISLNT 57 Query: 68 TICQLLDLPFSDGRT 82 T L+ Sbjct: 58 TPGYLMGWTEKPQDK 72 >gi|262282005|ref|ZP_06059774.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262262459|gb|EEY81156.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 190 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 2/88 (2%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +T LA+ G+ + ++ + W E I K L + + Sbjct: 18 IKSARLKAGMTQKELAKIIGVTKQTIINYEKGTTD--PSWERLEDIAKALKVDVDALFPY 75 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + G E + + Sbjct: 76 NEFGEMKGDVKWADHLERLANDWHYARM 103 >gi|262201756|ref|YP_003272964.1| hypothetical protein Gbro_1813 [Gordonia bronchialis DSM 43247] gi|262085103|gb|ACY21071.1| Protein of unknown function DUF2083,transcriptional regulator [Gordonia bronchialis DSM 43247] Length = 474 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I + R+ + L+ +GLAR+ L + N+ + Sbjct: 3 IGARLRRLRDERGLSQAGLARRVELSTSYVNQLENDQRP 41 >gi|49188540|ref|YP_025638.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola] gi|47525123|gb|AAT35137.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola] gi|320321602|gb|EFW77709.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|330962559|gb|EGH62819.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 116 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S K I I + LT S LA + S + +R P E + K Sbjct: 1 MMSSIRKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAET-----APDGEQLIK 55 Query: 61 ILAATNETICQ 71 + + Sbjct: 56 MAEFFEISPMD 66 >gi|119387120|ref|YP_918175.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377715|gb|ABL72479.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 213 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 47/199 (23%), Gaps = 25/199 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + N++ LA +G+ + + PS S+ KIL Sbjct: 26 DVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRS-----SPSVASLRKILGGLGV 80 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL--YFPPSGSGGFFDSGVFPTGNK------WNTVG 119 T+ + + E+ L + G + G+ Sbjct: 81 TMSEFFEPDLPQSPQPFFTPAELRDLTSRLYSAAQGPVGRMTLRQVGDARLHNLQILHER 140 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + A + L + + + GD L Sbjct: 141 YEPGADTGETMLAHHGSEGGIVVAGEIEL--------TVADQTRVLKAGDSYLFASTQPH 192 Query: 180 IVAKVLISRRGRSIDLMSL 198 + R ++S Sbjct: 193 ----RFRNVSDREAVVVSA 207 >gi|313676267|ref|YP_004054263.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312942965|gb|ADR22155.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 178 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 5/96 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I + L+ + +A GL + ++ + PS E++ I Sbjct: 3 KISNNIKYLRTEKGLSQTAMAEAVGLKRGNIASYEKELAQ-----PSIENLVNIADYFGI 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 I Q+++ K ++ ++ G Sbjct: 58 DIHQIVNEDLQYSTKKVKHDRNPFKIFEENFPIQGL 93 >gi|229011119|ref|ZP_04168312.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|228750002|gb|EEL99834.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 181 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|257792570|ref|YP_003183176.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325832727|ref|ZP_08165490.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257476467|gb|ACV56787.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325485866|gb|EGC88327.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 176 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 38/135 (28%), Gaps = 7/135 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ ++ ++ +A G+ + + + PS + + + Sbjct: 2 VGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQG-----APSLDKAADLARLYGVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ + P G + + + + + + S Sbjct: 57 LDDLVADEVEVVVADPDQAAGKPRDLHVLRHLEGKQCRICYRYTH--DEIDIFKAVSMPE 114 Query: 129 GIYAIQTQDTRHKTQ 143 + D + + Sbjct: 115 KARVLDVSDGWLRVE 129 >gi|167630842|ref|YP_001681341.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167593582|gb|ABZ85330.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 272 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + I + + E+ LT + +A +AG+ P + ++ ++ PS +I + Sbjct: 128 MGSLT--VIATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKVQ-----PSLRTIER 180 Query: 61 ILAATNETICQL 72 + A T C Sbjct: 181 VAEAVGVTPCYF 192 Score = 42.1 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 46/165 (27%), Gaps = 18/165 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + E L LAR AG+ + + PS +++ + N + Sbjct: 69 LGQKLRLLREERGLALQELARLAGISIETLRAIE-----AEEVRPSVDTLRTLADHLNVS 123 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--------WNTVGV 120 I QL+ +++ L + G + V Sbjct: 124 IPQLMGSLTVIATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKVQPSLRTIERVAE 183 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILN 160 +P + + + + P ++ +I + Sbjct: 184 AVGVTPCYFLVPQPSLENLLPVLGDDLIRLLGEPPIQQTLRMIYD 228 Score = 41.7 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 19/39 (48%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 I R+ E L+ ++R +G+ + ++ +R + R Sbjct: 6 IRRVREEKGLSLQEVSRLSGVSVSYLSEIERGTKQPAPR 44 >gi|302521880|ref|ZP_07274222.1| signal peptidase [Streptomyces sp. SPB78] gi|302430775|gb|EFL02591.1| signal peptidase [Streptomyces sp. SPB78] Length = 200 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSLN 199 + SMLP R GD L++ +V GD ++++ ++ K RRG +++ N Sbjct: 1 MRGPSMLPTLRHGDRLLVRYGARVRPGDVVVLRHPFQQDLLIVKRAAERRGAGWWVLADN 60 Query: 200 C----CYPVDTVEMSDIEWIARIL 219 V ++ + R+L Sbjct: 61 PWAGGDSNDYGVVPQEL-VLGRVL 83 >gi|304315786|ref|YP_003850931.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777288|gb|ADL67847.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 126 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 5/108 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + N+T +A G+ P++ ++ R P E++ KI N + Sbjct: 2 IGDKLKSLRKIKNVTQKDIADYLGVSPSAIGLYEQN-----RREPDLETVQKIADFFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LL T E G P Sbjct: 57 VDYLLGRTNKRNVDTSDDVDERLHKVMQELGPDILLAFYDLPNMTDEE 104 >gi|210615069|ref|ZP_03290438.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] gi|210150452|gb|EEA81461.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] Length = 179 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 16/139 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + NLT LA +A L ++ +R PS ++ IL Sbjct: 2 NIGNKIKELRIEKNLTQEELANRAELSKGFISQLERNLT-----SPSIATLIDILQCLGT 56 Query: 68 TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + + + P + + + Sbjct: 57 NLTEFFAEESDEQIVFRKDDFFVKKDTGLRNTIEWIIPNAQKNMMEPILLTLEAGGSTYL 116 Query: 119 GVPEIRSPHNGIYAIQTQD 137 VP Y +Q Sbjct: 117 DVP--HEGEEFGYVLQGSI 133 >gi|107100810|ref|ZP_01364728.1| hypothetical protein PaerPA_01001838 [Pseudomonas aeruginosa PACS2] gi|296390262|ref|ZP_06879737.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 185 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 14/178 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + L+ LAR A + + + S ++ +I AA Sbjct: 12 EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 66 Query: 67 ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L+ P +D E LL P+ + G V Sbjct: 67 VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 124 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P+ + I+ + + VN GD ++ R Sbjct: 125 EPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRN 182 >gi|322834164|ref|YP_004214191.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169365|gb|ADW75064.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 184 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 5/114 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + L+ LA +G+ +K +R PS + ++ A+ + Sbjct: 7 IATRLQALRKSQGLSLEQLASSSGVSKAMISKIERQDS-----SPSASLLGRLAASLGVS 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + QLL ++ + G + + +P Sbjct: 62 LAQLLSEDNEQPAPLRPLAQQEVWQDPDIGYLRRQVTAHEENGGAELVEITLPA 115 >gi|300817090|ref|ZP_07097309.1| bacteriophage CI repressor protein [Escherichia coli MS 107-1] gi|300530442|gb|EFK51504.1| bacteriophage CI repressor protein [Escherichia coli MS 107-1] Length = 218 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68 +AI+R+ E + T L G+ ++ + R + + + T + Sbjct: 38 KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 90 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L S + E+ ++ +P Sbjct: 91 LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 143 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + G ++ G+I + + Sbjct: 144 -------------VITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRL 182 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ DIE I +I+ Sbjct: 183 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 210 >gi|300916301|ref|ZP_07133048.1| bacteriophage CI repressor protein [Escherichia coli MS 115-1] gi|300416390|gb|EFJ99700.1| bacteriophage CI repressor protein [Escherichia coli MS 115-1] Length = 218 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68 +AI+R+ E + T L G+ ++ + R + + + T + Sbjct: 38 KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 90 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L S + E+ ++ +P Sbjct: 91 LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 143 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + G ++ G+I + + Sbjct: 144 -------------VITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRL 182 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ DIE I +I+ Sbjct: 183 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 210 >gi|261207860|ref|ZP_05922545.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566605|ref|ZP_06447025.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|260078243|gb|EEW65949.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161595|gb|EFD09475.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 203 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 5/94 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + + ++ LA K G+ + +K + P E + + T Sbjct: 5 DRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQST-----PDLEKVIIMSDFFGVTTD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 +L +K ++ + + S + Sbjct: 60 YILKGIEPVNDKEQKSKEIASKILYISSTAFVAI 93 >gi|256023555|ref|ZP_05437420.1| repressor protein [Escherichia sp. 4_1_40B] gi|323191017|gb|EFZ76284.1| bacteriophage CI repressor helix-turn-helix domain protein [Escherichia coli RN587/1] gi|324112715|gb|EGC06691.1| bacteriophage CI repressor helix-turn-helix domain-containing protein [Escherichia fergusonii B253] Length = 189 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68 +AI+R+ E + T L G+ ++ + R + + + T + Sbjct: 9 KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L S + E+ ++ +P Sbjct: 62 LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + G ++ G+I + + Sbjct: 115 -------------VITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRL 153 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ DIE I +I+ Sbjct: 154 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 181 >gi|189439596|ref|YP_001954677.1| putative transcriptional regulator [Bifidobacterium longum DJO10A] gi|317481901|ref|ZP_07940928.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|189428031|gb|ACD98179.1| Hypothetical transcriptional regulator [Bifidobacterium longum DJO10A] gi|316916692|gb|EFV38087.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 161 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 7/147 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT--N 66 I + I + E LT S A + + + ++ ++ E PS + I I Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAE-----PSIDMIRLISTRFEVP 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + P G + + + G + Sbjct: 58 MARLMEMPDNGFCQSCAMPFYRPEDHGTEPDGTRSGDYCNYCYDDGVFLQDYANSDELVA 117 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRK 153 ++ + + M L Sbjct: 118 ACAPMMAESCHISVEQAEDCMSALLPN 144 >gi|94311101|ref|YP_584311.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354953|gb|ABF09042.1| hypothetical protein Rmet_2163 [Cupriavidus metallidurans CH34] Length = 710 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 7/76 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN-------RWP 53 M++ + I + ++ E L + LARK P ++ + E R Sbjct: 1 MSTQTPMAIGHYLTQLREHAGLKQAELARKVTWSPAVLSRVESGERELNPEELGEVLRAI 60 Query: 54 STESIFKILAATNETI 69 T+ K+ + Sbjct: 61 GTDDALKLGERLQRSW 76 >gi|239814989|ref|YP_002943899.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801566|gb|ACS18633.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 9/95 (9%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S +I + + ++ LA+ +G+ + ++ +R + PS E++ ++ Sbjct: 1 MSAARIGAQVRALRMAAEMSAGSLAKASGVSASMLSRIERGLV-----SPSVETLERVAQ 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 + + + + + + ++ + Sbjct: 56 GLHVPVSRFFGDQARRTDFSHVRAGKGVVVDRVGA 90 >gi|124408|sp|P13772|IMMF_BPPH1 RecName: Full=ImmF control region 10 kDa protein gi|15521|emb|CAA29475.1| unnamed protein product [Bacillus phage phi105] gi|295002744|gb|ADF59165.1| hypothetical protein PHI105_00160 [Bacillus phage phi105] Length = 90 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KK+ I + +L + +A+ G+ T + + PST+++ +I Sbjct: 1 MLDGKKLGALIKDKRKEKHLKQTEMAKALGMSRTYLSDIENGRY-----LPSTKTLSRIA 55 >gi|332298033|ref|YP_004439955.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181136|gb|AEE16824.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 331 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 K+ E I+ + +R+ + LA K + S +K + G Sbjct: 2 KLAEKIEILRKRNGWSQEELADKVAVSRQSVSKWESGGAVP 42 >gi|293556240|ref|ZP_06674830.1| prophage Lp1 protein 8 [Enterococcus faecium E1039] gi|291601659|gb|EFF31921.1| prophage Lp1 protein 8 [Enterococcus faecium E1039] Length = 126 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + I + E+ + + L RK GL+ ++ NK + R STE + K+ N Sbjct: 3 KDLVNRIIDLREKRDWNQAELGRKIGLEKSAMNKIENGT-----RRVSTEELQKLAEVFN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 T LL + T++ E+ L + Sbjct: 58 VTTDYLLGRNQTPEWATKEDIIELDKLLESNANM 91 >gi|237744347|ref|ZP_04574828.1| predicted protein [Fusobacterium sp. 7_1] gi|229431576|gb|EEO41788.1| predicted protein [Fusobacterium sp. 7_1] Length = 189 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 21/192 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E I + + +NLT +A+K G+ +S K + +PS E I KI+ N Sbjct: 2 KISEKIKELRKNNNLTQKEMAKKLGVSLSSLQKYEYGDF-----YPSIEVIRKIVEFFNI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T+ LD+ +EKE+ S + + + + Sbjct: 57 TLNDFLDVSDI-----SNEEKEVINWNIKRSREVEKEIENDIEENARNIEILTEDEGIKN 111 Query: 128 NG----IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 I+ + + K + L + T D K Sbjct: 112 LYCDNIIWQMSIMNFYFKVNTEKKEVNIEFYNDL------NFENNKGVYDVTLTFDE-FK 164 Query: 184 VLISRRGRSIDL 195 + +S ++ L Sbjct: 165 IFLSHIEETLKL 176 >gi|229815891|ref|ZP_04446215.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] gi|229808586|gb|EEP44364.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] Length = 201 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 5/90 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ I + E LT S LA A + S +R P +S+ + A N Sbjct: 6 KVGSRIRILREAAGLTQSELAATAYVTRQSVGNWERGNT-----LPDVQSLQLVAKALNT 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + LL D + + Sbjct: 61 KVDGLLGDGLPDMLEETAEARRQLTHCLAA 90 >gi|138896745|ref|YP_001127198.1| prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196249440|ref|ZP_03148138.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134268258|gb|ABO68453.1| Prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196211197|gb|EDY05958.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 137 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KK+ E + R+ ++ T LA + + + +K + P +S+ K+ N Sbjct: 3 KKLGEMLKRLRKQQRWTQEQLAEQLNVSRSQISKWENGST-----LPDIQSLEKLCRLFN 57 Query: 67 ET 68 + Sbjct: 58 VS 59 >gi|225017440|ref|ZP_03706632.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] gi|224949850|gb|EEG31059.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 5/86 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I R ++ L+ LA K G+ + K + P E I + + Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLA-----SPELEKIVSLSECFKVSTD 66 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFP 96 LL ++ ++ + Sbjct: 67 YLLKDNITEPTPPQESALKGNKRMSW 92 >gi|210624086|ref|ZP_03294186.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] gi|210153219|gb|EEA84225.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] Length = 158 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + K + E + E++++T +A G+ + +K + + PST ++ + Sbjct: 88 KTIIRKSLGEVLKSHREKNHMTQEFVAEAIGVSRQAVSKWENGVSD-----PSTSNLIAL 142 Query: 62 LAATNETICQ 71 N + + Sbjct: 143 AKLFNMSPEE 152 >gi|108758632|ref|YP_630926.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] gi|108462512|gb|ABF87697.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] Length = 116 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Query: 1 MTSFSHKKIWEAIDRMAERH--NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ K+I + I + + T LA +A + + + +R R P E++ Sbjct: 1 MSDL-GKRIGQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGE-----RVPHVETL 54 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEK 88 + A ++ +L TE + Sbjct: 55 AALANALGVSLGELFTGTEQTLAQTEDLLR 84 >gi|307298381|ref|ZP_07578185.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916467|gb|EFN46850.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] Length = 135 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 5/107 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + L+ L G + +R S E++ KI A Sbjct: 34 QVASQLMSYRKERGLSQKQLGELLGFKQPYVSNIERGEEN-----LSLETLVKISACLKG 88 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + L + + T++ K +P+ S P+ Sbjct: 89 RLNVDLGITDRKTKITKEVIKYVPIYIPVISVQNNESSFCWKPSEAA 135 >gi|291297562|ref|YP_003508840.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290566782|gb|ADD39747.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 183 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I I + ++ LA +AG+ ++ +R R PS E + +I Sbjct: 1 MAERDIGGFIRDLRRNAKVSLRQLADQAGVSNPYLSQIERG-----LRKPSAEVLQQIAN 55 Query: 64 ATNETICQLL 73 A + + Sbjct: 56 ALKVSTPLMY 65 >gi|167820072|ref|ZP_02451752.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 91] Length = 113 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + AI ++ E + LA AGL+ + + +R S ++ K Sbjct: 20 MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 73 Query: 61 ILAATNETICQLLDLPFSDGRTTE 84 + A I +LL G Sbjct: 74 LARAFGVPIARLLSPAGDAGPPPH 97 >gi|167759352|ref|ZP_02431479.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] gi|167662909|gb|EDS07039.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] Length = 257 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/148 (8%), Positives = 39/148 (26%), Gaps = 10/148 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + ++ LA + G+ S +K + P + + +I Sbjct: 5 EKLIQLRRKQGMSQEQLADRLGITRQSVSKWESGSA-----APELSKLITLSEMFQVSID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L+ +++ + + + VP + + Sbjct: 60 YLVKDAEEPKGAEKEESRRLEEKVDNIVRYMKGYHYTSKAMIKG-----VPFVCVRLSRR 114 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILI 158 + + + G I + Sbjct: 115 LGKEGVAKGIIAVGNVAIGVLSFGCISV 142 >gi|154499890|ref|ZP_02037928.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] gi|150271488|gb|EDM98745.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] Length = 451 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 23/90 (25%), Gaps = 2/90 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAAT 65 + I + +T LA G+ + +K +R ++ Sbjct: 39 RTGSFIASLRREKGMTQKELASLLGISDKAVSKWERGESYPEITLFPALGATLGVTADEL 98 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 Q + ++ PLL Sbjct: 99 MAGERQPHTPTEAPEPVRIPEQALYPLLMD 128 >gi|104774634|ref|YP_619614.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423715|emb|CAI98696.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 119 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + R ++ LA G+ + + + + P +++ KI + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVDKIANIFGVS 60 Query: 69 IC 70 Sbjct: 61 RN 62 >gi|83311030|ref|YP_421294.1| hypothetical protein amb1931 [Magnetospirillum magneticum AMB-1] gi|82945871|dbj|BAE50735.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 241 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 21/154 (13%) Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133 + + + P + G G G + P + Sbjct: 96 NPLQFIHKLMHQPTTPSPQIPIRAVGRAGPAQEAFIGDGPV-DWTERP--------AFLR 146 Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS----RR 189 TSM+P YR G ++ ++ G +++ ++ K + Sbjct: 147 GVDAYGVYVAGTSMVPRYRPGQLVFVDPHRPPVNGQGVVVVRYDNAVLIKEFVGYGLDHD 206 Query: 190 GRSIDLMSLNCCYPVDTVE----MSDIEWIARIL 219 + L Y E S+I I I+ Sbjct: 207 EDVVILR----EYAPVDREFAVFGSEITAIHVIV 236 >gi|78049460|ref|YP_365635.1| putative polymerase V subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037890|emb|CAJ25635.1| putative polymerase V subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 159 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 + + + ++ + SM+ GDIL+++ ++ GD +L Sbjct: 47 DELDLNRVLIRNPPATFLYRAEGWSMILAGVCDGDILVVDRSVSPINGDMVLAIWEGNQP 106 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 V K+L I+L S + + Sbjct: 107 VCKILQ-VAVDHIELHSRSPHCAPIVLAP 134 >gi|295107669|emb|CBL05212.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R + +T + LA GL + + + E + I + Sbjct: 3 VGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRTVKP-----ELLESIADTLGVS 57 >gi|260589839|ref|ZP_05855752.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325662733|ref|ZP_08151327.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] gi|260539646|gb|EEX20215.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325470970|gb|EGC74198.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] Length = 143 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + T LA +GL ++ + R+PS+E + KI + + Sbjct: 3 VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGN-----RFPSSEQLEKIANSLKIS 57 Query: 69 ICQLLDLPFSDGRTTEK 85 + D F + Sbjct: 58 PYAMSDPNFDTYVSVMH 74 >gi|269127887|ref|YP_003301257.1| putative phage repressor [Thermomonospora curvata DSM 43183] gi|268312845|gb|ACY99219.1| putative phage repressor [Thermomonospora curvata DSM 43183] Length = 110 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%) Query: 140 HKTQDTSMLPLYRKGDILIL-NSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLM 196 + SMLP R GD L++ V GD ++ + R G ++ K + R L Sbjct: 5 VEVSGESMLPALRPGDWLLVRRRGRPVAAGDVVVARHPRRAGLLIVKRAVRRTAEGWWLE 64 Query: 197 SLN 199 S N Sbjct: 65 SDN 67 >gi|206578107|ref|YP_002238269.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|288935257|ref|YP_003439316.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290509310|ref|ZP_06548681.1| DNA-binding protein [Klebsiella sp. 1_1_55] gi|206567165|gb|ACI08941.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|288889966|gb|ADC58284.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289778704|gb|EFD86701.1| DNA-binding protein [Klebsiella sp. 1_1_55] Length = 193 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 8/138 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + + LA +AG +K +R P+ + ++ A Sbjct: 9 NQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGES-----SPTASMLGRLSGAF 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ L+ + P+ + P S S + +P Sbjct: 64 GISMSTLIARAEMQEGKLLR-FASQPVWHDPQSHYLRRHVSPRSDLPIDLVQIELPPGSD 122 Query: 126 PHNGI--YAIQTQDTRHK 141 YA+ Q + Sbjct: 123 VPMPASSYALARQLIWLQ 140 >gi|254413974|ref|ZP_05027742.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179110|gb|EDX74106.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] Length = 142 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ + I+++ E T S LA G+D ++ + + + + + K+ T Sbjct: 13 QQRLNQLIEQLLED-GWTQSSLANAIGVDFSTVYRWLKGKTKPEPDSRNFRQLAKVSGGT 71 Query: 66 NET 68 T Sbjct: 72 PRT 74 >gi|20808515|ref|NP_623686.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517137|gb|AAM25290.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 144 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ H +T + G+ S + + PS E KI N + Sbjct: 4 LGERIKQLRLEHGMTQEEFGKLFGVTKYSISLYESNKT-----SPSDEIKKKIAEYFNVS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + L+ L + KE + F V Sbjct: 59 MDWLMGLTDVRKPFIPENYKEKYKITKRDMLQYENFIQHVNA 100 >gi|116514765|ref|YP_813671.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116094080|gb|ABJ59233.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 119 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + R ++ LA G+ + + + + P +++ KI + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVDKIANIFGVS 60 Query: 69 IC 70 Sbjct: 61 RN 62 >gi|319948673|ref|ZP_08022795.1| Xre family DNA-binding protein [Dietzia cinnamea P4] gi|319437655|gb|EFV92653.1| Xre family DNA-binding protein [Dietzia cinnamea P4] Length = 479 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 5/102 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R+ E + LT + A+ GL + N+ ++ +R + KI Sbjct: 2 GARLRRLREENGLTQAAFAQSLGLSSSYLNQLEKDTRPVTSR-----VLVKISEVYGVDS 56 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + L P Sbjct: 57 TFFASDSDTRLIAAVTEALTDTQLSTEVPADEVVDLVRAHPA 98 >gi|304440739|ref|ZP_07400622.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370772|gb|EFM24395.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 135 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + E LT LA G + + + G R + E + +I Sbjct: 7 IKSLREEKGLTQKELADMLGTSLKTISNYEVKGTRPRT-MKNFEKLAEIFD 56 >gi|295106118|emb|CBL03661.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 83 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 15/44 (34%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 ++ + L+ + LAR G+ + + + + Sbjct: 20 ELKNRLKAARAEQGLSQTDLARLVGVSRQTISAIETGLFNPTAK 63 >gi|293374084|ref|ZP_06620420.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325845732|ref|ZP_08169012.1| cupin domain protein [Turicibacter sp. HGF1] gi|292647291|gb|EFF65265.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325488246|gb|EGC90675.1| cupin domain protein [Turicibacter sp. HGF1] Length = 180 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 6/134 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ LT LA + L ++ +R PS ++ IL A T Sbjct: 3 IGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLA-----SPSIATLVDILEALGTT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPH 127 + + +D + ++E + + + + V + P S Sbjct: 58 LGEFFAEEKNDQKVVFQREDVFIKEELDYNMTIRWIIPNAQKNEMEPIIVDLEPGGMSYD 117 Query: 128 NGIYAIQTQDTRHK 141 + + + K Sbjct: 118 DEPHHGEEFGYVLK 131 >gi|254431041|ref|ZP_05044744.1| peptidase family protein [Cyanobium sp. PCC 7001] gi|197625494|gb|EDY38053.1| peptidase family protein [Cyanobium sp. PCC 7001] Length = 182 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/107 (11%), Positives = 37/107 (34%), Gaps = 5/107 (4%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172 + V + + T + + +M GD+L+++ ++ G ++ Sbjct: 43 ADDYVE--ASIDLNAALIPRPTSTFLMRVEGDAMRAAGIHHGDLLVIDRSVNARPGCTVV 100 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G + + L +R L++ + ++ D ++ Sbjct: 101 VVHD-GRFLLRQLRGQRPP-WQLVASDPAIAPMVLQDDDALIWGVVI 145 >gi|126652627|ref|ZP_01724791.1| post-exponential-phase response transcriptional regulator [Bacillus sp. B14905] gi|126590618|gb|EAZ84735.1| post-exponential-phase response transcriptional regulator [Bacillus sp. B14905] Length = 248 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 4/68 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + EAI ++ LAR+ G+ ++ + PS E I KI Sbjct: 1 MTKETFGEAIKEARIARKISLRELARRIGISHPYLSQLENNHNN----NPSLEIIVKISN 56 Query: 64 ATNETICQ 71 ++ Sbjct: 57 ELGISLQH 64 >gi|116695934|ref|YP_841510.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530433|emb|CAJ96780.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 199 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 18/169 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + + + LT LA++A L + +K +R P+ ++ K+ A + T Sbjct: 16 IAERLAALRKLNGLTLEELAQRASLTKSYLSKLERGLS-----SPTIGTVLKLAEALDVT 70 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEIR 124 + QL+ P K + + P + G+ + P Sbjct: 71 VDQLIAKPQRGNEILLVKAA-DRVPFSPSAERQGYTYEAIATERVDKAMQPFVMVPPFTL 129 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + + ++ ++L + +++ GD L Sbjct: 130 AQDQPMASHAGEELIFVVSGEM--------EVLFDDRTVRMRAGDSLYF 170 >gi|75762482|ref|ZP_00742345.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228901189|ref|ZP_04065390.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|74490035|gb|EAO53388.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228858439|gb|EEN02898.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 122 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + ++ LT LA + L +R R S ++ KI + Sbjct: 11 VGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGE-----RNISMLTLQKIAVGLEVS 65 Query: 69 I 69 Sbjct: 66 P 66 >gi|331002934|ref|ZP_08326447.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413227|gb|EGG92601.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] Length = 177 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 34/150 (22%), Gaps = 16/150 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R+ LT LA +A L ++ + PS ++ IL Sbjct: 2 EIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENDIT-----SPSIATLLDILQCLGV 56 Query: 68 TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I +K+ P + Sbjct: 57 EIKDFFDEETETQVVFTEEDYFIKEDKELNNTIKWIIPNAQKNMMEPILQIIEPGGLTYP 116 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 P Y + H+ D + Sbjct: 117 DNP--HDGEEFGYVLSGTVEIHRGSDVYLA 144 >gi|331085854|ref|ZP_08334937.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406777|gb|EGG86282.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 179 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + LT LA +A L ++ +R PS ++ +L Sbjct: 2 NIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLT-----SPSIATLVDLLQCLGT 56 Query: 68 TICQLLDLPF 77 + Sbjct: 57 NLKDFFSDDS 66 >gi|325662004|ref|ZP_08150623.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471667|gb|EGC74886.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] Length = 186 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + LT LA +A L ++ +R PS ++ +L Sbjct: 9 NIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLT-----SPSIATLVDLLQCLGT 63 Query: 68 TICQLLDLPF 77 + Sbjct: 64 NLKDFFSDDS 73 >gi|296533827|ref|ZP_06896363.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265845|gb|EFH11934.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 192 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 20/172 (11%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + R+ L+ LA + G+ + ++ +R P+ + ++ A Sbjct: 11 EARLAACLARLRAEQGLSLEELAGRTGISRATLSRLERAEA-----SPTAAMLGRLCTAY 65 Query: 66 NETICQLLDLPFSDGRTTEKKEKEI-----------PLLYFPPSGSGGFFDSGVFPTGNK 114 T+ ++ + + + ++ P G G G P G Sbjct: 66 GRTLSWMMGEVEAQAPAVVRDAAQPRWTDPESGFRRRVVSPPGPGLRGELLEGRLPPGAS 125 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 P + + + GD L Sbjct: 126 VAYAASP--LAGLEHHLWLLEGVLEMAVEG--GEHRLLPGDCLRYRLHGPSR 173 >gi|229088202|ref|ZP_04220142.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] gi|228695098|gb|EEL48134.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] Length = 181 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 49/185 (26%), Gaps = 13/185 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I I R+ + LT +A + L + ++ +R + ES+ KI A Sbjct: 2 NDLIGVKIKRLRKERKLTLKQIADQTNLSISFLSQVERSKS-----SITLESLKKISEAL 56 Query: 66 NETICQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 P T + + P N + P + Sbjct: 57 GVNPSYFFSEPEKQTTPTVMRNIINKTNTLHYQFFYRDLAGNIENPIFNPILVLLNPGAK 116 Query: 125 SPHNGIYAIQTQDTR----HKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRT 177 + ++ Q + D + L+ VN D ++ Sbjct: 117 REESYSHSGQEFLYVLEGKLTIIIDKEEHVLNPYDCISLDSTTPHNWVNKTDSIVKFLCV 176 Query: 178 GDIVA 182 I+ Sbjct: 177 SSILV 181 >gi|168206392|ref|ZP_02632397.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170662087|gb|EDT14770.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 330 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 11/219 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++++ E++N + L FN+ KR N + + K T + ++ Sbjct: 92 LNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDIKLFQELSKEFTNTLDKEHEI 151 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNG 129 + + F S + F + V + Sbjct: 152 NLSDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISK 211 Query: 130 IYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 A+ + + + SM L++ +++I GD ++ + Sbjct: 212 SIALPSNYKDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIIIAYLSENNEATC-KK 270 Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222 I ++ ++L + Y + + SDI I ++ S Sbjct: 271 IHKKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 308 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +++ L+ + LA K G+ T+ +R +E P+ ++ ++ N + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVE-----PNIYTLIQLSKLMNRS 63 >gi|307265008|ref|ZP_07546569.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919993|gb|EFN50206.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 130 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + NLT LA+ G+ ++ + + P E++ KI N + Sbjct: 5 DRLKELRKEKNLTQEDLAKILGISRSTIAGYE-----TERKEPDYETLKKIADFFNVS 57 >gi|149002955|ref|ZP_01827866.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147758958|gb|EDK65953.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] Length = 47 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 17/38 (44%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 ++ + + R L + LA+ AG+ + + +R Sbjct: 2 QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDE 39 >gi|218892536|ref|YP_002441405.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234475|ref|ZP_04927798.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719] gi|254239730|ref|ZP_04933052.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192] gi|126166406|gb|EAZ51917.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719] gi|126193108|gb|EAZ57171.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192] gi|218772764|emb|CAW28549.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 216 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 14/178 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + L+ LAR A + + + S ++ +I AA Sbjct: 43 EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 97 Query: 67 ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L+ P +D E LL P+ + G V Sbjct: 98 VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 155 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P+ + I+ + + VN GD ++ R Sbjct: 156 EPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRN 213 >gi|220930676|ref|YP_002507585.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220001004|gb|ACL77605.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 60 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + E NLT S LA + G+ + + G S E++ ++ A + ++ Sbjct: 1 MKKLKQARESKNLTQSELASRTGISQQHISMIENGERIG-----SVETLRELAKALDTSV 55 Query: 70 CQ 71 Q Sbjct: 56 DQ 57 >gi|282860479|ref|ZP_06269545.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282564215|gb|EFB69751.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 161 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNET 68 + A + Sbjct: 56 VAKALRIS 63 >gi|254391929|ref|ZP_05007122.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294811944|ref|ZP_06770587.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197705609|gb|EDY51421.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294324543|gb|EFG06186.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 287 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 6/45 (13%), Positives = 14/45 (31%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + + + T LA++ G T + + R+ Sbjct: 29 GARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPTPRFAK 73 >gi|116049312|ref|YP_791886.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584533|gb|ABJ10548.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 216 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 14/178 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + L+ LAR A + + + S ++ +I AA Sbjct: 43 EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 97 Query: 67 ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L+ P +D E LL P+ + G V Sbjct: 98 VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 155 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P+ + I+ + + VN GD ++ R Sbjct: 156 EPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRN 213 >gi|56961729|gb|AAW31820.1| Orf213 [Dichelobacter nodosus] Length = 213 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 69/223 (30%), Gaps = 26/223 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M+ I I R + ++ + +A+ G+ + + E R P+ + Sbjct: 1 MSQEKLNTIATEITRAFAKIGISGRGTKAKIAKICGVTSAAVGAWFQ---ENNPRQPTID 57 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ KI TN ++ QL+ + + E+P + + Sbjct: 58 NLLKISKVTNTSLEQLIRGREALDSIPMLEMGELPRFLQQSQEAEISYR----------- 106 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---LI 173 + I I I D+ + P + ++ S + D + + Sbjct: 107 -LLSEVIHDEGGNIAIIAGDDSMMHLGTINYYP--KGAILVFRISDAKPQHEDLVLVKVT 163 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + + + G+ ++LN Y T E E I Sbjct: 164 IQGRDFFMFRQYLENAGKE-SFVALNPAYENIT-EFDRYEVIG 204 >gi|302335133|ref|YP_003800340.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318973|gb|ADK67460.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 335 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 5/104 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + +T LA G+ S K + +P + + KI + TI Sbjct: 5 DNLQHLRATRGMTQEQLAMMVGVSRQSVTKWESERA-----YPEMDKLLKICQVFDCTID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 L+ + K+ + Sbjct: 60 DLVQGDLTTRAGEPKRAMPQEAGDSIGYEEHCRSHALRLAVSVG 103 >gi|293570577|ref|ZP_06681629.1| prophage Lp2 protein 9 [Enterococcus faecium E980] gi|291609365|gb|EFF38635.1| prophage Lp2 protein 9 [Enterococcus faecium E980] Length = 126 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + I + E+ + + L RK GL+ ++ NK + R STE + K+ N Sbjct: 3 KDLVNRIIDLREKRDWNQAELGRKIGLEKSAMNKIENGT-----RKVSTEELQKLAEVFN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 T LL + E E+ + Sbjct: 58 VTTDYLLGRNQTPEWADENDLVELDKMLDSNVNM 91 >gi|289175228|emb|CBJ82031.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 401 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 41/175 (23%), Gaps = 11/175 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + +M E L+ L + P++ K + S+ ++L Sbjct: 11 ARLTQMREARGLSKISLGKLVERSPSTVTKWENGNHSPDAEI--LHSLSRVLNCPVGWFT 68 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + L G+F F + V Sbjct: 69 KPVIKYEKKPVFFRTLSSTAKDLCISAERYMGWFQELSFKMQEYLDYPDVDIPHLDVRDY 128 Query: 131 YAIQTQD---TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 AI Q + + L + D+L++ ++ Sbjct: 129 RAIDDQLIERMAFECRKAWGLGIAPIDDLLLVMENA------GVVCSRFEQGSTV 177 >gi|254465481|ref|ZP_05078892.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206686389|gb|EDZ46871.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 182 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ I AI R R + S LA +AG+ ++ ++ + PS E+++ + AA Sbjct: 5 HQMIAAAIQRERNRAGKSLSALAAQAGIAKSTLSQLEAGNGN-----PSVETLWALAAAL 59 Query: 66 N 66 Sbjct: 60 G 60 >gi|126698607|ref|YP_001087504.1| putative transcriptional regulator [Clostridium difficile 630] gi|254974574|ref|ZP_05271046.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091964|ref|ZP_05321442.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100060|ref|ZP_05329037.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305949|ref|ZP_05350121.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313699|ref|ZP_05355282.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516381|ref|ZP_05384057.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649481|ref|ZP_05396383.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655000|ref|ZP_05400409.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|260682647|ref|YP_003213932.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686247|ref|YP_003217380.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296449749|ref|ZP_06891519.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296877934|ref|ZP_06901953.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|115250044|emb|CAJ67864.1| putative transcriptional regulator, HTH [Clostridium difficile] gi|260208810|emb|CBA61711.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212263|emb|CBE02999.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296261473|gb|EFH08298.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296431002|gb|EFH16830.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 179 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I R+ LT LA + L ++ + PS ++ IL Sbjct: 2 DIGEKIKRLRTEKQLTQEELANRCELSKGFISQLENNLT-----SPSIATLIDILEILGT 56 Query: 68 TICQLLDLPF 77 + + + Sbjct: 57 NLREFFNEID 66 >gi|291543170|emb|CBL16280.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 164 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 5/89 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KI + I + + LT L K G+ + + + P E + + Sbjct: 1 MDQIKIGKFIATLRRQSGLTQEKLGEKIGVTNKTISPWENGNY-----MPDIEMLQLLAK 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPL 92 N +I +LL K E + Sbjct: 56 EFNVSINELLAGQKMSDEEFRKNADENII 84 >gi|27469304|ref|NP_765941.1| hypothetical protein SE2386 [Staphylococcus epidermidis ATCC 12228] gi|57865991|ref|YP_187629.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|242243285|ref|ZP_04797730.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|251811329|ref|ZP_04825802.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874681|ref|ZP_06283563.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|293367617|ref|ZP_06614269.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27316854|gb|AAO06029.1|AE016752_62 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57636649|gb|AAW53437.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|242233234|gb|EES35546.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|251805196|gb|EES57853.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296605|gb|EFA89117.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|291318187|gb|EFE58581.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319399817|gb|EFV88065.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] gi|329723842|gb|EGG60369.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] gi|329734356|gb|EGG70670.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] gi|329736140|gb|EGG72413.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 67 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 5/70 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R + LA+KAG+ + + +R PS + KI E + Sbjct: 3 NRLKELRARDGYNQTELAKKAGISRQTVSLIERNDFT-----PSILTAIKIARIFGEPVE 57 Query: 71 QLLDLPFSDG 80 + + D Sbjct: 58 DIFIMEEEDF 67 >gi|328464777|gb|EGF36092.1| putative transcriptional regulator [Lactobacillus helveticus MTCC 5463] Length = 65 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + E LT LA KAG+ ++ + +R ST+++ K+ +A N+T+ Sbjct: 9 ALLKAREDAGLTQRELAEKAGVPQSTVARIERGYST------STKTLSKLASAMNKTM 60 >gi|323466137|gb|ADX69824.1| Putative transcriptional regulator [Lactobacillus helveticus H10] Length = 98 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + E LT LA KAG+ ++ + +R ST+++ K+ +A N+T+ Sbjct: 42 ALLKAREDAGLTQRELAEKAGVPQSTVARIERGYST------STKTLSKLASAMNKTM 93 >gi|302869889|ref|YP_003838526.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501351|ref|YP_004080238.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302572748|gb|ADL48950.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315407970|gb|ADU06087.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 241 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 5/100 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R E+ LT LA ++GL + + +R +R PS + ++LAA Sbjct: 9 EIARTLRREREQAGLTQQALAARSGLSQAAIARIERG-----DRLPSLTAAERLLAALGR 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + ++ S + L Sbjct: 64 QLRIEVEPLDSHLDAALDEMAGTVLAERIEVLRLDRIMDA 103 >gi|167580903|ref|ZP_02373777.1| transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 132 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ AI LT + LA L+ + ++ +R R P+ + ++ A + Sbjct: 20 RVGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGT-----RMPTLHRLQQLSDALDC 74 Query: 68 TICQ 71 ++ Q Sbjct: 75 SVDQ 78 >gi|161507836|ref|YP_001577800.1| putative transcriptional regulator [Lactobacillus helveticus DPC 4571] gi|160348825|gb|ABX27499.1| putative transcriptional regulator [Lactobacillus helveticus DPC 4571] Length = 90 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + E LT LA KAG+ ++ + +R ST+++ K+ +A N+T+ Sbjct: 34 ALLKAREDAGLTQRELAEKAGVPQSTVARIERGYST------STKTLSKLASAMNKTM 85 >gi|21232394|ref|NP_638311.1| polymerase V subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21114172|gb|AAM42235.1| polymerase V subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 159 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 10/121 (8%) Query: 98 SGSGGFFDSGVFPTGNKWNTVGVP--------EIRSPHNGIYAIQTQDTRHKTQDTSML- 148 + P +G P + + + ++ + SM+ Sbjct: 15 GPACLDPVPLCLPVSALRIQLGFPSPAEDFQDDELDLNRVLIRNPPATFLYRAEGWSMIL 74 Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 GDIL+++ +++ GD +L V K+L I+L S + + Sbjct: 75 AGVCDGDILVVDRSVRPIQGDMVLAIWDGNQPVCKILQ-VAVDHIELHSRSPHCAPIVLA 133 Query: 209 M 209 Sbjct: 134 P 134 >gi|332653833|ref|ZP_08419577.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332516919|gb|EGJ46524.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 252 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 5/74 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + L+ LA K + S +K + P E I K+ Sbjct: 39 LGEKICTLRTGKGLSQEDLAAKLEVSRQSVSKWETGQSV-----PDLEKIIKLADLFGVN 93 Query: 69 ICQLLDLPFSDGRT 82 + +L+ Sbjct: 94 VDELVREGERPQPP 107 >gi|229192127|ref|ZP_04319095.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] gi|228591334|gb|EEK49185.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] Length = 118 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + LT + G+ + +K ++ PS E+I K+ N Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKI-----PSRENIEKLADFFNVP 58 Query: 69 ICQLLDLPFSDGRTTEK 85 L + +++ Sbjct: 59 TDYLFGKSDNSIKSSNN 75 >gi|118579884|ref|YP_901134.1| molybdate metabolism transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502594|gb|ABK99076.1| transcriptional regulator of molybdate metabolism, XRE family [Pelobacter propionicus DSM 2379] Length = 368 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 44/174 (25%), Gaps = 32/174 (18%) Query: 3 SFSHKKIWEA--------IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + +H I I + E + LA +AGL + + + + Sbjct: 12 TVTHSIIMSREEIPLSNHIKKFREERGWSQQELAERAGLSRAGVSAIE--TGKLVPSTVA 69 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 ++ K+ A E + Q+ + + + Sbjct: 70 ALALAKVFACPVEELFQVGGQAELHWA--WPPLQAPCRCWRAMVSNRLLLYPVEHS---- 123 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 P PH+G++ + + ++ ++ G Sbjct: 124 ------PLGMVPHDGVFR----------EGRLFENPFSDPYRTLVMASCDPAAG 161 >gi|293610621|ref|ZP_06692921.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826965|gb|EFF85330.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123811|gb|ADY83334.1| DNA-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 182 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L++ P + + + + + + + P Sbjct: 61 IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + + + +++ L + L + GD + K + Sbjct: 120 LSEPHPVGSVEHIIVVEGKALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166 Query: 187 S--RRGRSIDLMSL 198 G L+S Sbjct: 167 RALETGTKALLISE 180 >gi|293605930|ref|ZP_06688300.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292815717|gb|EFF74828.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 106 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + ++ + + LT S LA + GL + + + S E + Sbjct: 26 PLLTPGQLGSVLQAARKAQGLTQSALAIRIGLSQSRVSHLELH-----PHELSVEQLITW 80 Query: 62 LAATN 66 +A Sbjct: 81 CSALG 85 >gi|289626698|ref|ZP_06459652.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646258|ref|ZP_06477601.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330866821|gb|EGH01530.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 182 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + L+ LAR++G+ + + ++ + PS S+ K+L T+ Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58 Query: 70 CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 G+ + + + PS F P ++ Sbjct: 59 ADFFTFHQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAP---GADS 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P + S + + GD Sbjct: 116 GEEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PGDGYYFPTTL 159 Query: 178 GDIVAKVLISRRGRSIDLMSLN 199 + +++S N Sbjct: 160 PH----RFRNIGQDEAEIISSN 177 >gi|152988204|ref|YP_001349378.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150963362|gb|ABR85387.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 195 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 42/171 (24%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + L+ LAR A + + + + + + Sbjct: 22 EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRIAAALGVLFPD 81 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 D + + E + + + + G V P+ Sbjct: 82 LVQAAATDRSRINAVAWVGRHPESRATLLASAPARREVELWAWSLGPGERYVSEPDAAGW 141 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 + I+ + + VN GD ++ R Sbjct: 142 REMVLVIEGRLRLELADGERCIAAGDFHAFASDQPYAYVNDGDEVVRFTRN 192 >gi|262046886|ref|ZP_06019846.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|260572868|gb|EEX29428.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 74 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K + + R + LT LA + G T+ ++ + +PS + + Sbjct: 1 MMTMQAKLFGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLS-----FPSKRRLSE 55 Query: 61 ILAATNETICQ 71 I + Sbjct: 56 IAHFLGVKVDW 66 >gi|251798465|ref|YP_003013196.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546091|gb|ACT03110.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 112 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S I E I + ++ + LA +A ++ + + +R + P+ + + K Sbjct: 1 MNEISR-NIGENIRAIRKQKGFSQEQLALRAEINGSYMGQVERGE-----KSPTVDVLSK 54 Query: 61 ILAATNETICQLLDLPFSDGRTT 83 I A + QL+ +P + + Sbjct: 55 IAHALQCPLEQLVHMPGTPHEDS 77 >gi|160914483|ref|ZP_02076698.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991] gi|158433641|gb|EDP11930.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991] Length = 251 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S H+KI I M + N+ L + + + +K + P+ + Sbjct: 1 MESLDHEKIGHFISEMRKAKNMKQKELGDQLFVSDKTISKWENGIS-----MPNIVLLAP 55 Query: 61 ILAATNETICQ 71 + + ++ + Sbjct: 56 LAELLDISVNE 66 >gi|54027183|ref|YP_121425.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018691|dbj|BAD60061.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 136 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 5/81 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA AG+ ++ +R R PS E + +I A Sbjct: 16 DIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERG-----LRNPSAEVLAQIAKALRV 70 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 + L + + Sbjct: 71 SSEVLYVRAGYLEQRPHGPVR 91 >gi|328545047|ref|YP_004305156.1| XRE family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326414789|gb|ADZ71852.1| XRE family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 207 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 43/156 (27%), Gaps = 10/156 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESIFKI 61 +I + + + + + LAR +G+ S ++ + + GR + ++ Sbjct: 31 QIADRLKALRLQRGWSLDDLARLSGVSRASLSRLENAEVSASAATLGRLCAAHGMPLSRL 90 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + E L+ + + P G G P + + P Sbjct: 91 MYLVEEGFAPLIRYSDQPLWRDPETGFRRRAVSPPAQALAGEVLEGSLPPATRISYERPP 150 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 H+ + D GD L Sbjct: 151 RPGLEHHLVLL----DGALAVSLDGTRHTLSAGDCL 182 >gi|312862452|ref|ZP_07722695.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319945713|ref|ZP_08019964.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|311102095|gb|EFQ60295.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319748073|gb|EFW00316.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|328945360|gb|EGG39513.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1087] gi|332364441|gb|EGJ42213.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 170 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 49/189 (25%), Gaps = 34/189 (17%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I N T QL KE E+ + + + + Sbjct: 55 IAEYFNATPTQLF---------GTSKEIELEKSVLESNEYSDKVSEILKAVKYIEDFLET 105 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-------IQVNCGDRLLI 173 Q GD L ++ Q G + Sbjct: 106 DGQYLEDLLYLTRGNQLYT------------EDGDELYIDPTSQKRTLHNQYEPGFIVAR 153 Query: 174 KPRTGDIVA 182 +++ Sbjct: 154 DKSPLELLI 162 >gi|307129602|ref|YP_003881618.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527131|gb|ADM97061.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 89 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + L+ A K GLD T + +R R P+ E I I Sbjct: 27 RFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGV-----RNPTLEVIGVIADGLE 80 >gi|302189655|ref|ZP_07266328.1| e14 prophage; putative phage repressor [Pseudomonas syringae pv. syringae 642] Length = 138 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 4/114 (3%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + + + R+ + + LA+ G ++S+ E R P+ I + A Sbjct: 21 NESLAQRLQRLRNAAGKSQAALAKLCGWS----SQSRVGNYESGTREPTLGDIELMAKAL 76 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 LL + T E PS + G V Sbjct: 77 GVPYGVLLIGEDAAAATRALSEPSNIAEVEQPSRMYRYPIVSWVAAGEWSEAVE 130 >gi|326201072|ref|ZP_08190944.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988640|gb|EGD49464.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 213 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + + ++ LA + G+ + +K + P E I + Sbjct: 2 NISDRIQSLRKTKGISQEQLADELGVSRQAVSKWESGQS-----MPDIEKIILMSEYFKI 56 Query: 68 T 68 T Sbjct: 57 T 57 >gi|255284549|ref|ZP_05349104.1| UDP-glucose 6-dehydrogenase [Bryantella formatexigens DSM 14469] gi|255264903|gb|EET58108.1| UDP-glucose 6-dehydrogenase [Bryantella formatexigens DSM 14469] Length = 505 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + E R+ + +LT LA G++ ++ ++ PS + K Sbjct: 5 MKKLSLPLLAETTARLRKEKSLTQQQLAELTGINRAMLSRLEKQNY-----LPSIPQLEK 59 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + +L + E+ Sbjct: 60 LGEILGFEPAELFTEATETAASAEETSSAPEH 91 >gi|254410170|ref|ZP_05023950.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC 7420] gi|196183206|gb|EDX78190.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC 7420] Length = 75 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K + E + LA AG+ T +R R S E+I K+ Sbjct: 1 MTLREKFGADVRARREELGFSQEQLAELAGMHRTYVGSIERGE-----RNISLENIVKLC 55 Query: 63 AATN 66 A Sbjct: 56 EALQ 59 >gi|66396007|ref|YP_240340.1| ORF046 [Staphylococcus phage ROSA] gi|62636427|gb|AAX91538.1| ORF046 [Staphylococcus phage ROSA] Length = 107 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 5/87 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I + I ++ + +N+ + A K G++ ++ ++ + + E I +I Sbjct: 1 MRTSAEIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSGK-----IPMEDIAEIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89 A T LL + + Sbjct: 56 NALKVTPEYLLLKNRQTENEVQHRAAH 82 >gi|323136745|ref|ZP_08071826.1| hypothetical protein Met49242DRAFT_1213 [Methylocystis sp. ATCC 49242] gi|322398062|gb|EFY00583.1| hypothetical protein Met49242DRAFT_1213 [Methylocystis sp. ATCC 49242] Length = 233 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 63/230 (27%), Gaps = 24/230 (10%) Query: 11 EAIDRMAERHNLTPSGLA-RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + + + A R+ G +++ + + ++ Sbjct: 3 DRLKKARISAGYSTATDAIRRFGWKGSTYRAHENSQNQYDAETAKIYGQAYGVSPGWLLT 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---GFFDSGVFPTGNKWNTVGVPEIRSP 126 + P + + + F P G + + P P Sbjct: 63 GEGDMSPRTAAAYLAEPREGARNACFVPLKGKVAAGIWSEVFLAEKDDTQQRRTPLPTDP 122 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL----NSAIQVNCGDRLLIKPRTG---- 178 + + S+ ++GD + ++ ++ GD ++I+ Sbjct: 123 RFP----EEIQFDLVIEGASLNRFAQEGDYIRCIDARDADAEIQDGDLVVIERMREKTLR 178 Query: 179 DIVAKVLISRRGRS-IDLMSLNCCYPVDTV-------EMSDIEWIARILW 220 +I + L R S + + V +I I +ILW Sbjct: 179 EISGRRLQRNGDRHEFWPESDDPRWQAPLVAKNGLSESGEEIRVIGKILW 228 >gi|311894296|dbj|BAJ26704.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 208 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + L+ S LAR++G+ + + + R P+ E+++ + A Sbjct: 14 RVGLRLRELRVARGLSLSELARRSGVGKATLSGLESGT-----RNPTLETLYALTTALG 67 >gi|310830237|ref|YP_003965337.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753143|gb|ADO44286.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 210 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + + + LT S LA ++GL ++ +K + + P+ ++I + Sbjct: 24 IAARLRALRKEAGLTLSDLAMRSGLAASTLSKIENEQM-----SPTYDTILSLAEGLG 76 >gi|288870099|ref|ZP_06112925.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288868454|gb|EFD00753.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 67 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 16/36 (44%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I M ++ L+ LA+K G+ + N + + Sbjct: 9 IRSMRKQQGLSQEELAKKCGVSRQTINAIENNKYDP 44 >gi|260103128|ref|ZP_05753365.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083038|gb|EEW67158.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 98 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + E LT LA KAG+ ++ + +R ST+++ K+ +A N+T+ Sbjct: 42 ALLKAREDAGLTQRELAEKAGVPQSTVARIERGYST------STKTLSKLASAMNKTM 93 >gi|239814040|ref|YP_002942950.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239800617|gb|ACS17684.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/117 (10%), Positives = 32/117 (27%), Gaps = 5/117 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + +I + + + L+ LA G+ + + +R P+ + K+ Sbjct: 9 NDRIAQRVRDLRADRGLSLEALAAHCGVSRSMISLIERGES-----SPTAVLLEKLATGL 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + L + P + ++ G + + P Sbjct: 64 GVPLASLFEAPVPASGPVSRLADQLQWRDPHSGYVRRNVSPGGSASPIHIVEILFPP 120 >gi|119383229|ref|YP_914285.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372996|gb|ABL68589.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 204 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 5/90 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ER + + A + G+ P++ ++ + R P+ + + KI+ + Sbjct: 16 ERLRALRERKGWSLNRAAEEVGVPPSTLSRIEN-----RKMSPTLDLLLKIVRTFDMHPN 70 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + E + Sbjct: 71 DVFSGRPDQQEKQEISVSRASDPALIELPN 100 >gi|323482910|ref|ZP_08088310.1| hypothetical protein HMPREF9474_00059 [Clostridium symbiosum WAL-14163] gi|323403769|gb|EGA96067.1| hypothetical protein HMPREF9474_00059 [Clostridium symbiosum WAL-14163] Length = 106 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I+ + E+ + LA+++G+ ++ + + P+ ++ K+ Sbjct: 1 MMDEGYVLKRIEELCEKEGWSHYVLAKRSGISQSTISNMFSRTNQ-----PTFITVAKVC 55 Query: 63 AATNETICQLLDLPFS 78 A T+ Q D Sbjct: 56 DAFGITMAQFFDSEQH 71 >gi|303326709|ref|ZP_07357151.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] gi|302862697|gb|EFL85629.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] Length = 108 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 5/88 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +H L+ L+ +G+ ++ +R PS + + ++ A + Sbjct: 9 LGKRIRELRVKHGLSQEKLSELSGISSRHISEMERGESN-----PSFQVMEQLTFALGVS 63 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + + D + E L+ F Sbjct: 64 MKEFFDFEHHADDEAIRDELCRMLVGFS 91 >gi|295398102|ref|ZP_06808151.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] gi|294973621|gb|EFG49399.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] Length = 263 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 30/221 (13%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K++ E I ++ ++ ++ ++ G ++ + + P+ E I I Sbjct: 1 MEQNKRLGERIKKIRKKLGMSQLEFSKAIGATKSAVSNWENGYN-----APNNERIKAIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 N T+ LL +D + N + V Sbjct: 56 NLGNTTVDALLYGSLNDRVGNLLNAAIDSDNPTYNKKLDDLITDYLVKHENLIDIV---- 111 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIV 181 Y D + + + +N IQ D +I G Sbjct: 112 ------IGYNPDADDENIDIEQAMKENFINQNLPVFINKFDIQAQDDDEDIINKFIG--Y 163 Query: 182 AKVLISRRGRSID---------LMSLNCCYPVDTVEMSDIE 213 K +I + + L +N IE Sbjct: 164 VKSIIPFDVNTFEGVKKSIFYTLEQINPK---IVYTQETIE 201 >gi|257881839|ref|ZP_05661492.1| phage transcriptional regulator [Enterococcus faecium 1,231,502] gi|257817497|gb|EEV44825.1| phage transcriptional regulator [Enterococcus faecium 1,231,502] Length = 114 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 ++E + + ++ ++ S L + G S K + + P E++ K+ + + Sbjct: 2 LFERVKELCKKRGISISELENRIGFGKNSIYKW-------KTQSPKIETLQKVADYFHVS 54 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 LL +E+++ + Sbjct: 55 TDYLLGRTDDPNAGVAPEERKLTVE 79 >gi|254502876|ref|ZP_05115027.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438947|gb|EEE45626.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 182 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + I +AI R + ++ S LA+ AGL ++ ++ + PS E+++ Sbjct: 1 MTPIT--LIAKAIQRERLKAGMSLSALAKTAGLAKSTLSQLEAGQGN-----PSVETLWA 53 Query: 61 ILAATNETI 69 I +A N Sbjct: 54 IASALNVPF 62 >gi|91794584|ref|YP_564235.1| peptidase S24, S26A and S26B [Shewanella denitrificans OS217] gi|91716586|gb|ABE56512.1| peptidase S24, S26A and S26B [Shewanella denitrificans OS217] Length = 135 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 11/123 (8%) Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 P S + + + Q SM + GD+ Sbjct: 1 MRVIPISARAGITGFESPAAEYHQLGLSLDDLLVTHPSATFIGLAQGDSMQDVGIFDGDV 60 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 LI++ GD ++ G+ V K++ + L S N Y + D I Sbjct: 61 LIVDRHETARNGDVIVANFN-GEFVCKII--DTKSRLLLSS-NEQYQAVAIHDYDTFSIE 116 Query: 217 RIL 219 ++ Sbjct: 117 GVV 119 >gi|116751125|ref|YP_847812.1| molybdate metabolism transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700189|gb|ABK19377.1| transcriptional regulator of molybdate metabolism, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 374 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 6/116 (5%) Query: 1 MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M+ S +++ + + L+ S LA + G+ + + P+T Sbjct: 1 MSMGSVKERVVCNLKSARKARGLSQSELAGRVGVKRQAIYDMESGRY-----LPNTALAL 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 I + L L S+ ++ + + +P KW Sbjct: 56 YIARELGCRVEDLFVLEESEEEQPVTLVEKAGAANPRVAVASVRERLVAYPVDGKW 111 >gi|323486452|ref|ZP_08091776.1| hypothetical protein HMPREF9474_03527 [Clostridium symbiosum WAL-14163] gi|323400264|gb|EGA92638.1| hypothetical protein HMPREF9474_03527 [Clostridium symbiosum WAL-14163] Length = 106 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + E I+ + ++ + LA+++G+ ++ + + P+ ++ KI Sbjct: 1 MMDEGYVLERIEELCDKEGWSHYVLAKRSGISQSTISNMFSRTNQ-----PTFITVAKIC 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPL 92 A T+ Q + T E+++ Sbjct: 56 DAFGITMAQFFNSKKHLDLTEEQEDILCMF 85 >gi|315612472|ref|ZP_07887385.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315453|gb|EFU63492.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 71 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+ I + ++ L+ LA + G+ + + + + S E+ K+ Sbjct: 2 RKQTQNRIKELRKQSRLSQQALADQIGVFRNTISNWETGYSQ-----ISLENAKKVAEYF 56 Query: 66 N 66 Sbjct: 57 G 57 >gi|260587029|ref|ZP_05852942.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|331086463|ref|ZP_08335542.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] gi|260542519|gb|EEX23088.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|330410521|gb|EGG89949.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + T LA +GL ++ + R+PS+E + KI + + Sbjct: 3 VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGN-----RFPSSEQLEKIANSLKIS 57 Query: 69 ICQLLDLPFSDGRTTEK 85 + D F + Sbjct: 58 PYAMSDPNFDTYVSVMH 74 >gi|320009434|gb|ADW04284.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 167 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNET 68 + A + Sbjct: 56 VAKALRIS 63 >gi|239928988|ref|ZP_04685941.1| signal peptidase protein [Streptomyces ghanaensis ATCC 14672] gi|291437327|ref|ZP_06576717.1| signal peptidase protein [Streptomyces ghanaensis ATCC 14672] gi|291340222|gb|EFE67178.1| signal peptidase protein [Streptomyces ghanaensis ATCC 14672] Length = 145 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198 + SM+P GD L+++ ++ GD ++++ +V K RR ++ Sbjct: 22 EVTGPSMVPTLHHGDRLLVHYGARIKRGDVVVLRHPFQQDLLVVKRAAERREGGWWVLGD 81 Query: 199 NCCYP-----VDTVEMSDIEWIARI 218 N Y V ++ + R+ Sbjct: 82 N-AYAGGDSTDYGVVPDEL-VLGRV 104 >gi|225011082|ref|ZP_03701546.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] gi|225004802|gb|EEG42760.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] Length = 64 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + RH LT LA K G+ + N ++ + PS FK+ + I + Sbjct: 5 IKELRARHQLTQEDLAHKVGVSRQTINAIEKGKFD-----PSLPLAFKLAHLFHTPIEGI 59 Query: 73 LDLPF 77 Sbjct: 60 FTHES 64 >gi|218133396|ref|ZP_03462200.1| hypothetical protein BACPEC_01261 [Bacteroides pectinophilus ATCC 43243] gi|217992269|gb|EEC58273.1| hypothetical protein BACPEC_01261 [Bacteroides pectinophilus ATCC 43243] Length = 47 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I I + + +T +A + G+ + NK + G Sbjct: 2 DIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSNG 42 >gi|156974896|ref|YP_001445803.1| hypothetical protein VIBHAR_02615 [Vibrio harveyi ATCC BAA-1116] gi|156526490|gb|ABU71576.1| hypothetical protein VIBHAR_02615 [Vibrio harveyi ATCC BAA-1116] Length = 142 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 16/143 (11%) Query: 11 EAIDRMAERHNLTPSGLARK--------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 E + R+ E LT LA K A +DP + ++ +R P+T + K+L Sbjct: 4 EYLKRLREEVGLTQKELATKLNLASVDFASIDPVTISRWERGTT-----APTTVKVIKVL 58 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 L+ S +K + + Y S + + P Sbjct: 59 RVL---TTDLMPFLSSLPVEPDKSIFDEIVEYRFKSPWAKLMSDSYEAPTQCKDVLEAPL 115 Query: 123 IRSPHNGIYAIQTQDTRHKTQDT 145 + S + + Sbjct: 116 LESSQDDYLNSLKHFFASLSLGC 138 >gi|47564876|ref|ZP_00235920.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228984110|ref|ZP_04144296.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47558249|gb|EAL16573.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228775638|gb|EEM24018.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 117 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I ++ + N+T L G+ + + ++ + P E++ KI N T Sbjct: 2 IGEIIKKLRKEKNITQEQLGAAVGVSKMAISYFEKG-----KKAPGRETLEKIADFFNTT 56 >gi|297588232|ref|ZP_06946875.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573605|gb|EFH92326.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 179 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + + LT LA ++ L ++ +R PS +S+ +L A Sbjct: 2 EIGEKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLT-----SPSVDSLNDLLNALGT 56 Query: 68 TICQLLDLP 76 + Sbjct: 57 DMATFFMDK 65 >gi|18313906|ref|NP_560573.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] gi|18161474|gb|AAL64755.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] Length = 516 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + E+ L+ + LA+ +G+ ++ +R + P+ +++ I A Sbjct: 4 DVGSRIAELREKRGLSLTALAKLSGVSKSTLWGIERGEVV-----PTVSTLWNIANALGV 58 Query: 68 TICQLLDLP 76 T +L+ Sbjct: 59 TFGELITYD 67 >gi|298385979|ref|ZP_06995536.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298261207|gb|EFI04074.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 236 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 55/209 (26%), Gaps = 21/209 (10%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 S LA G+ + + RNR + K+ L Sbjct: 24 SELASYLGVSRATVSNW-----GARNRIDFHLLLNKMRDVD-LNWLLLGKGSPKHPAKFC 77 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY--------AIQTQ 136 + E + + T + + Y +I Sbjct: 78 ESELAKGEVQIIHNPKTVEAIDDRSVTLYDITAAANLKTMLTNKQQYTVGKIQIPSIPLC 137 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGD---IVAKVL-ISRR 189 D SM P+ + GDI+ N G+ L+ + K + S R Sbjct: 138 DGAVYISGDSMYPILKSGDIIGFKEINSFNNLIYGEMYLVSFTIEGDEYLAVKYVNHSDR 197 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S N + + I +A + Sbjct: 198 EGYLKLVSYNTHHDPMDIPFDTINAMAIV 226 >gi|284045488|ref|YP_003395828.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949709|gb|ADB52453.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 84 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ L+ LA AG+ P ++ +R + P ++ ++ A + Sbjct: 13 LARTIRQLRRDRELSQEALANAAGVHPKHLSEIERGNKD-----PRASTVARLADALGVS 67 Query: 69 ICQLLDLPFSDGR 81 I +L P D Sbjct: 68 IGELYGQPGGDEP 80 >gi|77465797|ref|YP_355300.1| hypothetical protein RSP_3771 [Rhodobacter sphaeroides 2.4.1] gi|77390215|gb|ABA81399.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 234 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 61/208 (29%), Gaps = 22/208 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + E + L+ AG+ + R P + + Sbjct: 13 MQKKTLDAFVRGLQIVMEAEGIKMKPLSVAAGMGESGVRDLIRNES-----SPKVANAYA 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + T+ +++ + + I + +G+ G+ V Sbjct: 68 LARELGRTVDEIIQIGMTGDLNARPAHAPIAVAGCVGAGARVDLLDAYEK-GDGMYHVAR 126 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI------QVNCGDRLLIK 174 P PH + + SM+PLYR G +L A + + + Sbjct: 127 PPQLKPHG--------IVAVEVKGESMMPLYRPGSVLFYTRAAAEGVPVEALNT-PCVCE 177 Query: 175 PRTGDIVAKVLISRR-GRSIDLMSLNCC 201 G KV+ + L+SLN Sbjct: 178 DADGRAWLKVVKVGSQEGTFSLLSLNPD 205 >gi|70729282|ref|YP_259019.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68343581|gb|AAY91187.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 104 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + AI R + LT + L K G DP + ++ + PS E++F + Sbjct: 6 LGAAIKRYRKVAGLTQAELGEKTGFDPKTISRFETGTYT-----PSVEALFLLAEVLG 58 >gi|332142295|ref|YP_004428033.1| hypothetical protein MADE_1014505 [Alteromonas macleodii str. 'Deep ecotype'] gi|327552317|gb|AEA99035.1| hypothetical protein MADE_1014505 [Alteromonas macleodii str. 'Deep ecotype'] Length = 215 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 23/183 (12%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW--PSTESIFKILAATNETICQLLDLP 76 LT A+ G+ +F+ + +T+ I K A + Sbjct: 23 EKGLTQQKAAKILGISQPAFSYYLSGRNPSAKKSMALNTDIIRKFAAMVGCKPSDIDSDL 82 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136 K + + SG S V P A+ Sbjct: 83 TDVNTVVSGLTKAWVPVKYALSGMESTMKSL---------AVNFP----------AVPKD 123 Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + D +KG +I + A +V+ D +++ ++ +L + + Sbjct: 124 CFAIEV-DVENYDGLKKGQHIICDPASKVHEHDYVIVIKD-NEVFYGLLRYLSAQWVVTY 181 Query: 197 SLN 199 SLN Sbjct: 182 SLN 184 >gi|289551814|ref|YP_003472718.1| Signal peptidase I [Staphylococcus lugdunensis HKU09-01] gi|315660014|ref|ZP_07912872.1| signal peptidase I LepB [Staphylococcus lugdunensis M23590] gi|289181345|gb|ADC88590.1| Signal peptidase I [Staphylococcus lugdunensis HKU09-01] gi|315494915|gb|EFU83252.1| signal peptidase I LepB [Staphylococcus lugdunensis M23590] Length = 192 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Query: 142 TQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 SM P ++ + ++++ + ++ GD ++ K K LI + G ++ Sbjct: 32 VSGDSMYPTFKDREKVVVSKISKTLDHIDNGDIVVFKEDKDRDFIKRLIGKPGDKVEYKG 91 Query: 198 L 198 Sbjct: 92 D 92 >gi|257868500|ref|ZP_05648153.1| DNA binding protein [Enterococcus gallinarum EG2] gi|257802664|gb|EEV31486.1| DNA binding protein [Enterococcus gallinarum EG2] Length = 70 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E L+ LA G+ + N + PS E +I + Sbjct: 3 VINRLRSIREEQGLSQGELAAIMGVSRQTINAIETHKYN-----PSLELALRIAHYFKLS 57 Query: 69 ICQ 71 + + Sbjct: 58 VEE 60 >gi|108803769|ref|YP_643706.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765012|gb|ABG03894.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 155 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ER L+ L R+AGL P S +++ EG S E+++++ A + Sbjct: 89 LRALRERAGLSQEELERRAGLAPGSVARAE-GAGEGDEIRASVETLWRLARALETSPTH 146 Score = 36.3 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 13/38 (34%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + + ER L+ L+ G T + +R Sbjct: 8 GARLRELRERAGLSQEELSEIVGYSRTWVAELERQSRT 45 >gi|325680803|ref|ZP_08160341.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107583|gb|EGC01861.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 217 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 6/110 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + +T + LA K G+ + +K + P + ++ + Sbjct: 21 IGKFIAACRKEKKMTQAQLAEKLGISDRAVSKWETGKC-----MPDASLMPELCEQLGIS 75 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I L + K+ E +L + G +V Sbjct: 76 INDLFNGRRVTM-ENYKEAAEAAMLQLKENEEKKNRMMLDLEIGMGIPSV 124 >gi|309777338|ref|ZP_07672299.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914879|gb|EFP60658.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 190 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + H L+ LA + S +K ++ + PS+E++ ++ + I L Sbjct: 4 IKMLRTEHQLSQESLAALLDVSRQSVSKWEKGLSK-----PSSENLARLAEIFSVHIQDL 58 Query: 73 LDLPFSDGRTTEKKEKEIPLL 93 ++ R+ +L Sbjct: 59 MNDSIQLERSFHTTHFFTDML 79 >gi|254719638|ref|ZP_05181449.1| hypothetical protein Bru83_08855 [Brucella sp. 83/13] gi|265984647|ref|ZP_06097382.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837728|ref|ZP_07470596.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] gi|264663239|gb|EEZ33500.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306407184|gb|EFM63395.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] Length = 470 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 4 FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI+ I R+ LT + +A G+ P+ N +R R + + + K+ Sbjct: 1 MSERKIFTGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55 Query: 62 L 62 Sbjct: 56 A 56 >gi|210620597|ref|ZP_03292145.1| hypothetical protein CLOHIR_00088 [Clostridium hiranonis DSM 13275] gi|210155311|gb|EEA86317.1| hypothetical protein CLOHIR_00088 [Clostridium hiranonis DSM 13275] Length = 71 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I AI + +T LA G++ ++ + PS +++ ++ + Sbjct: 10 QIVRAILESRKETGITQKQLAEITGINQADISRYENGSGN-----PSLKTLKRLAEGMGK 64 Query: 68 T 68 T Sbjct: 65 T 65 >gi|206580811|ref|YP_002238246.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|290509290|ref|ZP_06548661.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55] gi|206569869|gb|ACI11645.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|289778684|gb|EFD86681.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55] Length = 189 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/124 (9%), Positives = 36/124 (29%), Gaps = 8/124 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + ++ + S LA + G+ + +R P+ +++KI N Sbjct: 5 QHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLN 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEI 123 + S + +++ ++ G + + Sbjct: 60 VPFSAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKG 119 Query: 124 RSPH 127 H Sbjct: 120 VIEH 123 >gi|56709057|ref|YP_165102.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680742|gb|AAV97407.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 188 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 31/77 (40%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + ER L+ LA+++G+ ++ + + G PS ++ ++L Sbjct: 10 ELGQRLRVIRERAGLSQRALAKRSGIPNSTISLIE-----GGKINPSVSTLRRVLGGIPI 64 Query: 68 TICQLLDLPFSDGRTTE 84 + + + Sbjct: 65 GLSDFFAFEPEQEKASF 81 >gi|147668752|ref|YP_001213570.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|147668945|ref|YP_001213763.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432070|ref|YP_003461943.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|146269700|gb|ABQ16692.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|146269893|gb|ABQ16885.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288945790|gb|ADC73487.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 71 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 1 MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 MT + ++ E I + ++ ++ LA +AG+ T +R R PS ++I Sbjct: 1 MTKKTIEQRFGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGE-----RNPSLKNIE 55 Query: 60 KILAATNETICQ 71 I A I Sbjct: 56 AIAKALEVPISD 67 >gi|317488862|ref|ZP_07947392.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] gi|316911936|gb|EFV33515.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] Length = 176 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 38/135 (28%), Gaps = 7/135 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ ++ ++ +A G+ + + + PS + + + Sbjct: 2 VGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQG-----APSLDKAADLARLCGVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ + P G + + + + + + S Sbjct: 57 LDDLVADEVEVVVADPDQAAGKPRDLHVLRHLEGKQCRICYRYTH--DEIDIFKAVSMPE 114 Query: 129 GIYAIQTQDTRHKTQ 143 + D + + Sbjct: 115 KARVLDVSDGWLRVE 129 >gi|294633078|ref|ZP_06711637.1| DNA-binding protein [Streptomyces sp. e14] gi|292830859|gb|EFF89209.1| DNA-binding protein [Streptomyces sp. e14] Length = 482 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/168 (8%), Positives = 35/168 (20%), Gaps = 19/168 (11%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R+ H + +AR G+ + N+ ++ R + + +I Sbjct: 16 LRRLRREHGMNQVEMARALGISTSYANQIEQ-----SRRPLTATVLLRIAEVFGVD---- 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 P + + G + + + Y Sbjct: 67 ---PEFFSEADQDRLAAELRTALADEACGAPSPDPRELAEAVRDHPELARALVALHRRYR 123 Query: 133 I-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 Q + P +V D + Sbjct: 124 DTAEQAAALASPGGGGAPALLPPG----EPHDEVR--DFFYTHHNHFE 165 >gi|262197947|ref|YP_003269156.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081294|gb|ACY17263.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 187 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + + ++ E ++ + +A+ AG+ +++ +R P+ + + AA Sbjct: 9 TGAHLAHNVKQLREARGMSQAQIAKLAGIPRPTWSTLERGDGN-----PTLSVLLRAAAA 63 Query: 65 TNETICQ 71 ++ + Sbjct: 64 LQVSLEE 70 >gi|169634707|ref|YP_001708443.1| hypothetical protein ABSDF3388 [Acinetobacter baumannii SDF] gi|169794401|ref|YP_001712194.1| hypothetical protein ABAYE0206 [Acinetobacter baumannii AYE] gi|213159023|ref|YP_002321021.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215481956|ref|YP_002324138.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|260556833|ref|ZP_05829050.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|301345186|ref|ZP_07225927.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056] gi|301510677|ref|ZP_07235914.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058] gi|301595815|ref|ZP_07240823.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059] gi|332854786|ref|ZP_08435549.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332868898|ref|ZP_08438475.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332872792|ref|ZP_08440757.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|169147328|emb|CAM85189.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|169153499|emb|CAP02656.1| conserved hypothetical protein [Acinetobacter baumannii] gi|193078630|gb|ABO13673.2| putative transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213058183|gb|ACJ43085.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213989083|gb|ACJ59382.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|260409439|gb|EEX02740.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|332727788|gb|EGJ59192.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332733046|gb|EGJ64247.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332738953|gb|EGJ69815.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 182 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L++ P + + + + + + + P Sbjct: 61 IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + + + + + +++ L + L + GD + K + Sbjct: 120 LSEPHPVGSVEHIIVVEGRALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166 Query: 187 S--RRGRSIDLMSL 198 G L+S Sbjct: 167 RALETGTKALLISE 180 >gi|319794332|ref|YP_004155972.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315596795|gb|ADU37861.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 199 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 8/118 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + L+ + LA +G+ +K +R P+ + ++ A + Sbjct: 19 IATRLLALRQAKGLSLAELAELSGVSKAMISKVERAQS-----SPTAVLLGRLAAGLGVS 73 Query: 69 ICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEI 123 + QLL + + + P +G + TG+ V +P Sbjct: 74 LAQLLTEEKEKEAPQRLRTKAMQEVWRDPEAGYLRRQVAERGATGSGVELVEVELPRS 131 >gi|296450909|ref|ZP_06892658.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296878611|ref|ZP_06902616.1| helix-turn-helix domain protein [Clostridium difficile NAP07] gi|296260281|gb|EFH07127.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296430418|gb|EFH16260.1| helix-turn-helix domain protein [Clostridium difficile NAP07] Length = 258 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ + ++ LA + G + +K + +P TE + ++ + Sbjct: 3 LGEKIFKLRKEKGISQEALAEQIGTTRQAISKWENNQG-----FPETEKLLQLSNIFEVS 57 >gi|163757981|ref|ZP_02165069.1| hypothetical protein HPDFL43_00110 [Hoeflea phototrophica DFL-43] gi|162284270|gb|EDQ34553.1| hypothetical protein HPDFL43_00110 [Hoeflea phototrophica DFL-43] Length = 103 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 21/50 (42%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ LT +A K G ++ ++ + + R + E ++L Sbjct: 40 ALRKQAGLTQEQMAEKLGTKKSNISRLESLNSDVSPRLATLEDYARVLGY 89 >gi|15924088|ref|NP_371622.1| Cro/CI family transcriptional regulator protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926683|ref|NP_374216.1| hypothetical protein SA0949 [Staphylococcus aureus subsp. aureus N315] gi|21282710|ref|NP_645798.1| hypothetical protein MW0981 [Staphylococcus aureus subsp. aureus MW2] gi|49485936|ref|YP_043157.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651707|ref|YP_185971.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus COL] gi|87161040|ref|YP_493696.1| hypothetical protein SAUSA300_0998 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194797|ref|YP_499594.1| hypothetical protein SAOUHSC_01045 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267591|ref|YP_001246534.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393646|ref|YP_001316321.1| hypothetical protein SaurJH1_1180 [Staphylococcus aureus subsp. aureus JH1] gi|151221176|ref|YP_001331998.1| hypothetical protein NWMN_0964 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979421|ref|YP_001441680.1| hypothetical protein SAHV_1090 [Staphylococcus aureus subsp. aureus Mu3] gi|161509281|ref|YP_001574940.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140502|ref|ZP_03564995.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316351|ref|ZP_04839564.1| hypothetical protein SauraC_09456 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731709|ref|ZP_04865874.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733667|ref|ZP_04867832.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255005885|ref|ZP_05144486.2| hypothetical protein SauraM_05430 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795171|ref|ZP_05644150.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407120|ref|ZP_05680269.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421788|ref|ZP_05684709.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|258423598|ref|ZP_05686488.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258436152|ref|ZP_05689135.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443359|ref|ZP_05691702.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258444969|ref|ZP_05693286.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258449856|ref|ZP_05697954.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258451955|ref|ZP_05699971.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258454955|ref|ZP_05702918.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|262048684|ref|ZP_06021566.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262052206|ref|ZP_06024412.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|269202709|ref|YP_003281978.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282894125|ref|ZP_06302356.1| DNA-binding protein [Staphylococcus aureus A8117] gi|282925282|ref|ZP_06332939.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282928620|ref|ZP_06336217.1| DNA-binding protein [Staphylococcus aureus A10102] gi|284024023|ref|ZP_06378421.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848087|ref|ZP_06788834.1| DNA-binding protein [Staphylococcus aureus A9754] gi|295405902|ref|ZP_06815711.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296276499|ref|ZP_06859006.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208264|ref|ZP_06924694.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246372|ref|ZP_06930216.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300912341|ref|ZP_07129784.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381344|ref|ZP_07363997.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700899|dbj|BAB42195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246868|dbj|BAB57260.1| similar to transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus Mu50] gi|21204148|dbj|BAB94846.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244379|emb|CAG42807.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285893|gb|AAW37987.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus COL] gi|87127014|gb|ABD21528.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202355|gb|ABD30165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740660|gb|ABQ48958.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149946098|gb|ABR52034.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373976|dbj|BAF67236.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721556|dbj|BAF77973.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368090|gb|ABX29061.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724523|gb|EES93252.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728367|gb|EES97096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257789143|gb|EEV27483.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257841275|gb|EEV65720.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842121|gb|EEV66549.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|257846299|gb|EEV70323.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257848841|gb|EEV72826.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851449|gb|EEV75388.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257856091|gb|EEV79009.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257856776|gb|EEV79679.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257860170|gb|EEV83002.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257862835|gb|EEV85600.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|259159877|gb|EEW44915.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|259163140|gb|EEW47700.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262074999|gb|ACY10972.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|269940593|emb|CBI48972.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282589659|gb|EFB94745.1| DNA-binding protein [Staphylococcus aureus A10102] gi|282592558|gb|EFB97568.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282763611|gb|EFC03740.1| DNA-binding protein [Staphylococcus aureus A8117] gi|285816779|gb|ADC37266.1| putative DNA-binding protein [Staphylococcus aureus 04-02981] gi|294824887|gb|EFG41309.1| DNA-binding protein [Staphylococcus aureus A9754] gi|294969337|gb|EFG45357.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296887003|gb|EFH25906.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176738|gb|EFH35998.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300886587|gb|EFK81789.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302332708|gb|ADL22901.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus JKD6159] gi|302750922|gb|ADL65099.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340327|gb|EFM06268.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829492|emb|CBX34334.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130316|gb|EFT86303.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315196128|gb|EFU26485.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320141086|gb|EFW32933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143143|gb|EFW34933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440647|gb|EGA98357.1| transcriptional regulator [Staphylococcus aureus O11] gi|323441674|gb|EGA99320.1| transcriptional regulator [Staphylococcus aureus O46] gi|329313766|gb|AEB88179.1| Transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus T0131] gi|329730799|gb|EGG67178.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 179 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 35/197 (17%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + NLT LA + L ++ + PS E+ I+ Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126 T + ++ +K+E+ I Y G+ + + N+++ + P Sbjct: 57 TPSEFFKDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111 Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183 + ++ + I +N G + + K Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEIYQAQEEDVLYFKA 154 Query: 184 ----VLISRRGRSIDLM 196 L + ++ Sbjct: 155 RDNHRLSNESNNETRIL 171 >gi|325475695|gb|EGC78871.1| DNA-binding protein [Treponema denticola F0402] Length = 93 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Query: 1 MTSFSHKKIWEAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M+ F ++ I+R+ + L+ LA +A + N + R PS ++ Sbjct: 1 MSVFLREQQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETG-----KRTPSLDT 55 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 + KI A N L + +K+ ++ + Sbjct: 56 LLKICHALNINPAVLFSDTEEEKAEAKKQVLDMIQRW 92 >gi|254389013|ref|ZP_05004244.1| signal peptidase protein [Streptomyces clavuligerus ATCC 27064] gi|294814949|ref|ZP_06773592.1| Signal peptidase [Streptomyces clavuligerus ATCC 27064] gi|326443320|ref|ZP_08218054.1| hypothetical protein SclaA2_19743 [Streptomyces clavuligerus ATCC 27064] gi|197702731|gb|EDY48543.1| signal peptidase protein [Streptomyces clavuligerus ATCC 27064] gi|294327548|gb|EFG09191.1| Signal peptidase [Streptomyces clavuligerus ATCC 27064] Length = 127 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198 + SM P GD L+++ +V G +++ + ++ K L RR ++ Sbjct: 16 EVTGPSMYPTLHHGDRLLVHYGARVRPGQVAVLRHPLQQDLLIVKRLAGRRDGGWWVLGD 75 Query: 199 NC 200 N Sbjct: 76 NP 77 >gi|251798962|ref|YP_003013693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546588|gb|ACT03607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 122 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 5/83 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + E T A K G+ + + ++ R P TE++ K Sbjct: 2 NIGNRIAGLREERKWTQEQTASKLGISRAALSHYEKN-----RREPDTETLAKFADLYQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90 TI L+ + + + Sbjct: 57 TIDYLVGRTTNTQAALSEDVRNF 79 >gi|323463311|gb|ADX75464.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius ED99] Length = 67 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R + LA+KAG+ + + +R G PS + KI Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNGFT-----PSILTAIKIARIFG 53 >gi|307266068|ref|ZP_07547614.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918937|gb|EFN49165.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 182 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + + LT + G+ ++ K ++ E PS ES+ KI + Sbjct: 2 IGERLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAE-----PSIESLIKIADYFQVS 56 >gi|291006644|ref|ZP_06564617.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 278 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 6/135 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + AI + ER ++ L+++ GL + + + R P+ E + Sbjct: 1 MTPRARA-LSAAIRSIRERSGVSGRELSKRLGLSHGTVSHWETG-----RRVPTPEDVAS 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L A T + + +E + + P +G + +W +G+ Sbjct: 55 LLTAAGITGDEKQRVVELARHASEPNWLTVGMPGIPQQLAGAVECERAASSIAEWAPMGL 114 Query: 121 PEIRSPHNGIYAIQT 135 P + + I Sbjct: 115 PGLLQTADYARTISK 129 >gi|237797335|ref|ZP_04585796.1| putative UV resistance protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020185|gb|EGI00242.1| putative UV resistance protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 58 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202 G L+++ A G+ ++ V K L + L S N Y Sbjct: 6 ILNGTKLVIDRARTHQVGNVVVAYID-NQPVVKRLDRQLNGGWMLSSDNPKY 56 >gi|261420641|ref|YP_003254323.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768311|ref|YP_004133812.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261377098|gb|ACX79841.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|317113177|gb|ADU95669.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 135 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + ++ ++ T LA + + + +K + + P +S+ K+ N Sbjct: 3 NLGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSL-----LPDVQSLEKLCQLFNI 57 Query: 68 T 68 + Sbjct: 58 S 58 >gi|212224500|ref|YP_002307736.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212009457|gb|ACJ16839.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 68 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E LT LA+ G+ + ++ + PS + FKI Sbjct: 3 NRVRELREARGLTQEELAKALGVTRQTIIAIEKGKYD-----PSLKLAFKIARFFG 53 >gi|183981401|ref|YP_001849692.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174727|gb|ACC39837.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 473 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R+ E H LT LAR GL + N+ + R + + + + Sbjct: 7 GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQ-----RPITVSVLLALAERFDLPT 61 Query: 70 CQLLDLPF 77 Sbjct: 62 HYFAPDSD 69 >gi|118617981|ref|YP_906313.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118570091|gb|ABL04842.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 483 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R+ E H LT LAR GL + N+ + R + + + + Sbjct: 17 GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQ-----RPITVSVLLALAERFDLPT 71 Query: 70 CQLLDLPF 77 Sbjct: 72 HYFAPDSD 79 >gi|56421725|ref|YP_149043.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56381567|dbj|BAD77475.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 135 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + ++ ++ T LA + + + +K + + P +S+ K+ + Sbjct: 3 NLGETLKQLRKQRRWTQEELAEQLNVSRSQISKWENGSL-----LPDVQSLEKLCQLFDV 57 Query: 68 T 68 + Sbjct: 58 S 58 >gi|326390747|ref|ZP_08212300.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993141|gb|EGD51580.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 67 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ LT LA+ G+ P ++ +R R P E+ KI N TI ++ Sbjct: 4 LKELRMKYKLTQKELAKNLGITPDYVSQIERG------RIPGMETAIKIANFFNTTIDEI 57 Query: 73 L 73 Sbjct: 58 F 58 >gi|317128355|ref|YP_004094637.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473303|gb|ADU29906.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 73 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I + + ++ S L+R G+ + + +R + PS E I +I + N Sbjct: 2 IGEIIRKKRKERGISLSELSRMTGVSKSYLSYIERGM----KKNPSIEVIKRIFHSLN 55 >gi|302873656|ref|YP_003842289.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307686620|ref|ZP_07629066.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302576513|gb|ADL50525.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 140 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ L+ LA + + T ++ + + PS + + +I + Sbjct: 4 GEFLKKLRAEKGLSQRQLADLSKISNTEISRMESGERQK----PSPKILKEIAPHLGISY 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92 +L+ T E ++ + Sbjct: 60 RELMAQAGYIEETIEHEKYTEHI 82 >gi|238923032|ref|YP_002936545.1| hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] gi|238874704|gb|ACR74411.1| Hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] Length = 147 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + T LA +GL ++ + R+PS+E + KI + + Sbjct: 3 VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGN-----RFPSSEQLEKIANSLKIS 57 Query: 69 ICQLLDLPFSDGRTTEK 85 + D F + Sbjct: 58 PYAMSDPNFDTYVSVMH 74 >gi|271962441|ref|YP_003336637.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505616|gb|ACZ83894.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 99 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 ++ EA+ E+ LT S LA + GL + + + G P E + + L Sbjct: 32 ELGEAVRLRREQLGLTQSELAERTGLKQPAVARFEAGGTMPTI--PMLERLAEALEM 86 >gi|225569026|ref|ZP_03778051.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] gi|225161825|gb|EEG74444.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] Length = 323 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 5/103 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + ++ T +A + + S +K + G +P + + + Sbjct: 1 MKEETKMGFAENLQFLRQKKGYTQEQIAEQLQVSRQSVSKWESGGS-----FPEMDKLLQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + + L+ + E E E + + + S G Sbjct: 56 LSEMFQCGMDVLVQGDARNSYVEEHDEYEKHMNEYSRAISFGV 98 >gi|15963764|ref|NP_384117.1| hypothetical protein SMc02783 [Sinorhizobium meliloti 1021] gi|307302567|ref|ZP_07582324.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307316102|ref|ZP_07595546.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15072939|emb|CAC41398.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] gi|306897942|gb|EFN28684.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903237|gb|EFN33827.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 125 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EA+ + R ++ +A G+ P + + G+ PS + + + Sbjct: 1 MTPF-----GEAVRELRRRKGVSQKEMAAAIGVSPAYLSALE----HGKRGAPSFDFLQR 51 Query: 61 ILAATNETICQ 71 + N + Sbjct: 52 VAGYFNVIWDE 62 >gi|27376226|ref|NP_767755.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349366|dbj|BAC46380.1| blr1115 [Bradyrhizobium japonicum USDA 110] Length = 196 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 40/127 (31%), Gaps = 9/127 (7%) Query: 1 MTSFSHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + +K I + + + +T + LA ++G+ + +R + Sbjct: 1 MKTMDQQKLDRAIGRRLKTLRTQAGMTLNELAGRSGVSRAMIGRVERAQSSA-----TAA 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + K+ AA + T+ ++ L + + +G + Sbjct: 56 LLNKLCAALDVTLSDVVALAEKPPERLMRLADQPHWRDPDSGYRRRHASPPDAASGIEII 115 Query: 117 TVGVPEI 123 V +P Sbjct: 116 VVDLPAG 122 >gi|284044033|ref|YP_003394373.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948254|gb|ADB50998.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 182 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + ++I E + +R LT S LA + L ++ +R PS S+ ++ Sbjct: 1 MTPEQIGERLRAARQRQELTLSALAERVELTKGFLSQVERGLT-----SPSVGSLLRLCE 55 Query: 64 AT 65 Sbjct: 56 VL 57 >gi|257054282|ref|YP_003132114.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256584154|gb|ACU95287.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 201 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 9/132 (6%), Positives = 32/132 (24%), Gaps = 3/132 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + +T + LA G+ ++ ++ + + ++ + Sbjct: 12 VGPRLRALRRHRGITLAELATATGVSESTLSRLESGQRRATLEL--LLPLARVYNVPLDD 69 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + T + + G + P P+ Sbjct: 70 LVGAPRTGDPRVHLTPIHRFGMTFVPLSRRPGGVQAFKMIIPARP-EPAEPTPQTHDGFE 128 Query: 129 GIYAIQTQDTRH 140 +Y + + Sbjct: 129 WLYVLNGRLRLV 140 >gi|39996460|ref|NP_952411.1| hypothetical protein GSU1358 [Geobacter sulfurreducens PCA] gi|39983340|gb|AAR34734.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] Length = 800 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 38/157 (24%), Gaps = 23/157 (14%) Query: 86 KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQD 144 + + P + G + V + + + + Sbjct: 640 PFRLLGPEQARPYENCVPLYDFKIAAGGFSDEQQVDDCDWVELPEEFRPRKGLFVAQVVG 699 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--------GDIVAKVLISRRGR----- 191 SM G + A + ++++ G K+ S + Sbjct: 700 ESMNRRIPNGAWCLFRIASAGSRNGKVVLASHREIADNDTGGHYTVKIYESTKESFSDGT 759 Query: 192 ----SIDLMSLN--CCYPVDTV---EMSDIEWIARIL 219 SI L + Y + + D+ I ++ Sbjct: 760 WRHASIILRPDSALPGYEPIVLSEEQAEDLRVIGELV 796 >gi|23099979|ref|NP_693445.1| post-exponential-phase response transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778210|dbj|BAC14480.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Oceanobacillus iheyensis HTE831] Length = 108 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 4/99 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I ++ ++ S LA KAG+ + + +R PS + I KI T Sbjct: 2 IGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQS----NPSIQFIEKISNVLGVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + +++ +D +++ +I S F Sbjct: 58 VNEIILENNNDDADLDEEWMQIVQEAMKSGVSKEQFKEY 96 >gi|332971234|gb|EGK10197.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 108 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/107 (9%), Positives = 32/107 (29%), Gaps = 2/107 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + ++ +T + LA+ G+D T+ +K + E + + I + + + Sbjct: 4 GQRLKELRKKRKITQAELAKVLGVDNTTISKWESNTYE--PEMTAIKEIADFFNVSADYL 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++P + + + Sbjct: 62 LGRTNVPSQFETEAAHRTDDPMDDLPQQAREDIEKFKEFIRQKYGIE 108 >gi|325291464|ref|YP_004277328.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059317|gb|ADY63008.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 121 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 EA+ + ER +T +A G+ P + + G+ PS + + +I N Sbjct: 6 EAVRLLRERKGVTQKEMAAAIGVSPAYLSALE----HGKRGKPSFDLLQRIAGYFNIIWD 61 Query: 71 Q 71 + Sbjct: 62 E 62 >gi|297617997|ref|YP_003703156.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145834|gb|ADI02591.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 216 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ E LT L + + + +K ++ P +E++ K+ N + Sbjct: 4 VGSRIKQLREERGLTQEQLGKILNVQKAAISKYEKGHT-----LPDSEALKKLAKFFNVS 58 Query: 69 ICQLLDLPFSDGR 81 + LL L + Sbjct: 59 VDYLLCLTDTREP 71 >gi|291539377|emb|CBL12488.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis XB6B4] Length = 393 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 11/68 (16%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT E I + L A K G+ P + +K + PS E++ Sbjct: 16 MTM------AENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQS-----CPSIENLCV 64 Query: 61 ILAATNET 68 I + + Sbjct: 65 ISEILDVS 72 >gi|237795789|ref|YP_002863341.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] gi|229262761|gb|ACQ53794.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] Length = 152 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 4/86 (4%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ E I R+ + + LA G+ T+ ++ ++ P ++ + Sbjct: 3 KKMINESFGEYITRLRKLKGYSQRKLALITGISNTTISRIEKNITT----NPDLNTLKLL 58 Query: 62 LAATNETICQLLDLPFSDGRTTEKKE 87 N +L+ + K+ Sbjct: 59 AQHLNIDEIYMLEAAGYKDDSNHNKQ 84 >gi|257413729|ref|ZP_05591775.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] gi|257202528|gb|EEV00813.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] Length = 403 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 11/68 (16%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT E I + L A K G+ P + +K + PS E++ Sbjct: 26 MTM------AENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQS-----CPSIENLCV 74 Query: 61 ILAATNET 68 I + + Sbjct: 75 ISEILDVS 82 >gi|167771688|ref|ZP_02443741.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] gi|167666328|gb|EDS10458.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] Length = 110 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +I + I ++ + H L+ LA + G+ T + + + P ++ L Sbjct: 5 EIGQRIRKIRKAHGLSQESLAERVGISNTHMSHIETGNT--KLSLPVLVALADALD 58 >gi|120436831|ref|YP_862517.1| hypothetical protein GFO_2494 [Gramella forsetii KT0803] gi|117578981|emb|CAL67450.1| conserved hypothetical protein [Gramella forsetii KT0803] Length = 243 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 20/182 (10%) Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 PS + K + + + F SG Sbjct: 62 QPSKSVVEK-FENFYNLKIEDFKYDNFSEEALPVDFNSYMKIPIINHRARAGFLSGW--- 117 Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167 G+ +P + Y + + + SM + D L+ +V+ Sbjct: 118 GDPEYIQELPTTLWEVDKEY--KGKYVCFEVTGDSMDNNTRESIVENDTLLCREIQRVHW 175 Query: 168 GDRL--------LIKPRTGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 ++L +I R I+ K ++ + L SLN Y TV M D+ I Sbjct: 176 KNKLHLHRWKNFVIVHREEGILIKRVLEHDTETGKLILQSLNPMYEDQTVYMDDLIAIFN 235 Query: 218 IL 219 ++ Sbjct: 236 VI 237 >gi|296118462|ref|ZP_06837041.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295968603|gb|EFG81849.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 469 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 5/133 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ + LA GL + N+ + R + + +I Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + + L P + V + Sbjct: 61 ATFFSRDDDSRLLAEIQDVVQDKELCPTPVEFQELSELVYNHPSVARIMVDIHRRYRNAR 120 Query: 129 GIYAIQTQDTRHK 141 ++ T R + Sbjct: 121 DKLSLATDTRRTR 133 >gi|288935233|ref|YP_003439292.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|288889942|gb|ADC58260.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 189 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/124 (9%), Positives = 36/124 (29%), Gaps = 8/124 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + ++ + S LA + G+ + +R P+ +++KI N Sbjct: 5 QHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLN 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEI 123 + S + +++ ++ G + + Sbjct: 60 VPFSAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKG 119 Query: 124 RSPH 127 H Sbjct: 120 VIEH 123 >gi|257438062|ref|ZP_05613817.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] gi|257199393|gb|EEU97677.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] Length = 208 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + LT LA + T+ +K + +PS +S+ +I + +I Sbjct: 8 EKLQELRKSRGLTQEELAEALFVSRTAISKWESGRG-----YPSIDSLKEISRYFSVSID 62 Query: 71 Q 71 + Sbjct: 63 E 63 >gi|218134985|ref|ZP_03463789.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] gi|217990370|gb|EEC56381.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] Length = 368 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + +++ + LA + G+ S +K + G P + I K+ Sbjct: 3 LADKIINLRKKNGWSQEELAERLGVSRQSVSKYE-----GAQSVPDLDKILKLSEIFG 55 >gi|254388551|ref|ZP_05003785.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197702272|gb|EDY48084.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 202 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 7 MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L + + ++ Sbjct: 62 VAKALRISAETLYVRAGILDERDRDELETRAVI 94 >gi|307153159|ref|YP_003888543.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] gi|306983387|gb|ADN15268.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] Length = 377 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 7/155 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K++ I ++ R L+ LA+ AG+ + + + + K L Sbjct: 1 MKQDKELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYA--PSATVALRLAKAL 58 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 E + L D + + GG Sbjct: 59 GCRVEDLFWLEDDDAVIEAQPTESVPMGQPFRLSLAQVGG-----QLVAHPLIQEDAFRT 113 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 +G ++QD+ K + + + + ++ Sbjct: 114 EIIAADGEGWRESQDSTVKVKLWTSADVIHRTVVI 148 >gi|297531429|ref|YP_003672704.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254681|gb|ADI28127.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 135 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + ++ ++ T LA + + + +K + + P +S+ K+ N Sbjct: 3 NLGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSL-----LPDVQSLEKLCQLFNI 57 Query: 68 T 68 + Sbjct: 58 S 58 >gi|302524530|ref|ZP_07276872.1| predicted protein [Streptomyces sp. AA4] gi|302433425|gb|EFL05241.1| predicted protein [Streptomyces sp. AA4] Length = 178 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 53/190 (27%), Gaps = 24/190 (12%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I LT LA +AG+ ++ +R + PS E++ +I + + Sbjct: 5 RIREFRTLRGLTVRQLADQAGVSTGLISQVERGVTD-----PSLETMRRIAEVLDIPLFS 59 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPHNG 129 L P Y S + P G K + + + Sbjct: 60 LFQEPD----EETVAVIRHDDRYRISSPHHAITYTRASPGGAKLEVLEGVLEPGGVSSDE 115 Query: 130 IYAIQTQDTRHKTQDT------SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + + +++ + + GD +S + G A+ Sbjct: 116 LRSHPSEECVVVIAGRLTVQVGEQTHVLKTGDSCHFDSTVPHR-------FRNDGRTTAR 168 Query: 184 VLISRRGRSI 193 L+S S Sbjct: 169 FLVSVTPPSY 178 >gi|227431010|ref|ZP_03913071.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353202|gb|EEJ43367.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 118 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + ++A+ L+ S L K G+ TS K P E+I K + Sbjct: 2 ETILDRTKKLAKEKGLSLSELEEKIGIAKTSIYSWKSNI-------PKGETIQKTADVLD 54 Query: 67 ETICQLLDLPFSDGR 81 + LL Sbjct: 55 TSTDYLLGRTDDPTP 69 >gi|227522686|ref|ZP_03952735.1| possible transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227090134|gb|EEI25446.1| possible transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 159 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E I + +R + + +A+K G+D T+F+K K R S + + K Sbjct: 29 MASHLEQSLAERIAYLQDRSQFSQADIAKKMGIDRTAFSKIKNGT-----RKVSADELNK 83 Query: 61 ILAATNET 68 + + Sbjct: 84 LSEIFGVS 91 >gi|254169279|ref|ZP_04876111.1| CBS domain pair protein [Aciduliprofundum boonei T469] gi|289596725|ref|YP_003483421.1| transcriptional regulator, XRE family [Aciduliprofundum boonei T469] gi|197621756|gb|EDY34339.1| CBS domain pair protein [Aciduliprofundum boonei T469] gi|289534512|gb|ADD08859.1| transcriptional regulator, XRE family [Aciduliprofundum boonei T469] Length = 184 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +I R + LA+++G+ ++ K ++ + PS KI A +E Sbjct: 5 LSSIKERRRRLGWSQKELAKRSGVSQSAITKIEKGDMN-----PSYTLAVKIFNALDEGE 59 Query: 70 CQLL 73 + Sbjct: 60 REKY 63 >gi|310825925|ref|YP_003958282.1| DNA binding protein [Eubacterium limosum KIST612] gi|308737659|gb|ADO35319.1| DNA binding protein [Eubacterium limosum KIST612] Length = 113 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 5/79 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ I + + LT LA G+ + ++ PS +KI Sbjct: 39 DKLKNRIKELRKEKGLTQLQLADAVGVSTRTIISLEKGQYN-----PSIMLAYKIARLFG 93 Query: 67 ETICQLLDLPFSDGRTTEK 85 TI L L + E Sbjct: 94 TTIEALYCLEENLKNEMEN 112 >gi|187778373|ref|ZP_02994846.1| hypothetical protein CLOSPO_01966 [Clostridium sporogenes ATCC 15579] gi|187771998|gb|EDU35800.1| hypothetical protein CLOSPO_01966 [Clostridium sporogenes ATCC 15579] Length = 139 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +I + + R +L + LA+ + + + + R P T ++ K Sbjct: 1 MKKL--AEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSK 53 Query: 61 ILAATNETICQLLDLPFSDGR 81 + N ++ +L + Sbjct: 54 LADFFNCSVDYILGRSENRNG 74 >gi|169335357|ref|ZP_02862550.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] gi|169258095|gb|EDS72061.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] Length = 138 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 18/40 (45%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I++ + + + + LT L+ K G+ + K ++ Sbjct: 2 IYKNLKDLRKNNGLTQEQLSEKIGVSRQAIGKWEKGESIP 41 >gi|153011249|ref|YP_001372463.1| hypothetical protein Oant_3929 [Ochrobactrum anthropi ATCC 49188] gi|151563137|gb|ABS16634.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC 49188] Length = 483 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 5 SHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S +KI+ I R+ LT + +A G+ P+ N +R R + + + K+ Sbjct: 15 SERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKLA 69 >gi|152964472|ref|YP_001360256.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151358989|gb|ABS01992.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 194 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 9/132 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + LT + LA+ +G+ S K +R + PS + ++ Sbjct: 14 RLAQVLRAARQARGLTTAALAQASGVSRGSVVKLERGDSQ-----PSAALLGRLCGPLGL 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T+ +L + T + P P G + EI P Sbjct: 69 TLSELFARVEARTATGRLVRAASAPTWTDPVSGHRRRSLSPSPAGPAQ----LTEIVLPA 124 Query: 128 NGIYAIQTQDTR 139 Q Sbjct: 125 GAAVTYPAQAYA 136 >gi|15485444|emb|CAC67538.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 111 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + ++ +LT LA K G+ +S+ +R + P+ E++ KI N + Sbjct: 5 ERLKELRKQAHLTQVELASKLGIVQSSYADWERG-----KKKPTQENLVKIAQILNVS 57 >gi|25010888|ref|NP_735283.1| hypothetical protein gbs0833 [Streptococcus agalactiae NEM316] gi|77413146|ref|ZP_00789346.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae 515] gi|23095267|emb|CAD46477.1| Unknown [Streptococcus agalactiae NEM316] gi|77160847|gb|EAO71958.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae 515] Length = 71 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 15/40 (37%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + + R + + LA+ G+ + + +R Sbjct: 5 LKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTP 44 >gi|331086470|ref|ZP_08335549.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410528|gb|EGG89956.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + T LA +GL ++ + R+PS+E + KI + + Sbjct: 3 VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGN-----RFPSSEQLEKIANSLKIS 57 Query: 69 ICQLLDLPFSDGRTTEK 85 + D F + Sbjct: 58 PYAMSDPNFDTYVSVMH 74 >gi|329725199|gb|EGG61688.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 179 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 56/197 (28%), Gaps = 35/197 (17%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + NLT LA + L ++ + PS E+ I+ Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126 T + + ++ +K+E+ I Y G+ + + N+++ + P Sbjct: 57 TPSEFFEDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111 Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183 + ++ + I +N G + + K Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEIYQAQEEDVLYFKA 154 Query: 184 ----VLISRRGRSIDLM 196 L + ++ Sbjct: 155 RDNHRLSNESNNETRIL 171 >gi|326332875|ref|ZP_08199132.1| putative signal peptidase protein [Nocardioidaceae bacterium Broad-1] gi|325949233|gb|EGD41316.1| putative signal peptidase protein [Nocardioidaceae bacterium Broad-1] Length = 124 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-----RSIDL 195 K SM P R GD L + G ++ + G +V K + RR L Sbjct: 17 KVVGVSMEPTLRAGDRLWVAYGRTPVPGRVVVARLADGAVVVKRAVERRTTASGRSGWWL 76 Query: 196 MSLNCCYP 203 +S N P Sbjct: 77 LSDNPAAP 84 >gi|294814036|ref|ZP_06772679.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294326635|gb|EFG08278.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 22 MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 76 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L + + ++ Sbjct: 77 VAKALRISAETLYVRAGILDERDRDELETRAVI 109 >gi|293401810|ref|ZP_06645951.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304762|gb|EFE46010.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 371 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 8/109 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K+ E I + + N+T LA G+ +S +K + +P + + Sbjct: 1 MKPL---KLGENIAALRRKANITQDQLANWIGVSKSSVSKWETNTS-----YPDIIFLPQ 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + N T+ +L+ + + Sbjct: 53 LATLFNVTVDELMGYEPQLTQEAIVELYHQLSDEIAHDSDEALKHCEEL 101 >gi|283787659|ref|YP_003367524.1| SOS response protein [Citrobacter rodentium ICC168] gi|282951113|emb|CBG90801.1| putative SOS response protein [Citrobacter rodentium ICC168] Length = 119 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 10/104 (9%) Query: 98 SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 + FP+ E + + + SM L Sbjct: 16 APLFTEHCLAGFPSPAAD---YTEEELDLNAWCIRRPSATYFVRAIGDSMRNKGLHSGDL 72 Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 ++ GD ++ + G+ K L + + L+ +N Sbjct: 73 LVKPQQ----GDIVIAETD-GEFTVKRLQLKP--RVALLPMNPA 109 >gi|260460388|ref|ZP_05808640.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034033|gb|EEW35292.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 202 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 49/191 (25%), Gaps = 35/191 (18%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WP------------ 53 ++ + + L+ + LA KAG+ + ++ +R R + WP Sbjct: 18 RVGRRVRALRLERGLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSAL 77 Query: 54 ---STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 +++ + + + + + G Sbjct: 78 IADGNDAVNDLYCVRANSRRAIPVKSEGIAKALLSPPGATLTGMLVTVEANGGTAEAYAH 137 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-----------PLYRKGDILIL 159 G+++ V + + K + S P + IL + Sbjct: 138 AGHEFGYV------LAGEVELVVDSTKYVLK-EGDSFAFKSTLLHAFRNPGAEQCQILWV 190 Query: 160 NSAIQVNCGDR 170 N+ D Sbjct: 191 NTTKPSEVRDG 201 >gi|238855118|ref|ZP_04645444.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|260664951|ref|ZP_05865802.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|282934260|ref|ZP_06339535.1| transcriptional repressor [Lactobacillus jensenii 208-1] gi|313472501|ref|ZP_07812991.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|238832258|gb|EEQ24569.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|239529934|gb|EEQ68935.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|260561434|gb|EEX27407.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|281301669|gb|EFA93938.1| transcriptional repressor [Lactobacillus jensenii 208-1] Length = 138 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 2/112 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E + M ++ LA K + S +K + + + + K+ + Sbjct: 2 DQINERLKEMRLNAGMSQEELASKLNVSRQSVSKWE--TGDSLPDILKLKQLSKLYDVSI 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + I + + ++ + + G + + + Sbjct: 60 DYIVGNTEFDRKEDTQKTSEQAVLKKQKAKRALKGVLWGTACMLAAFGMEVL 111 >gi|225420264|ref|ZP_03762567.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] gi|225041081|gb|EEG51327.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] Length = 177 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + LT LA + L ++ +R PS ++ IL Sbjct: 2 QIGAKLKELRILKGLTQEELADRTELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56 Query: 68 TICQLLDLPF 77 +I + + Sbjct: 57 SIGEFFNETQ 66 >gi|313884124|ref|ZP_07817890.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312620571|gb|EFR31994.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 138 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 5/96 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + +T LAR+ G+ + +K +R +P SI + Sbjct: 1 MKDDSLGRLIANRRKELGMTQLDLARRMGVTDKAVSKWERDLS-----FPDLSSIPNLAE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 + ++ L+ + G+ + EK I L Sbjct: 56 TLDYSLVDLMQVKEKTGKPQKVAEKPIITLILTVVP 91 >gi|297153993|gb|ADI03705.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 443 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 1/104 (0%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R+ ER L+ LA++ + ++ ++ + P E + ++ AT E + +L Sbjct: 24 LRRLKERSGLSYGALAKRLDMSTSTLHRYCNGRAVPNDYAP-VERLARVCRATGEELVEL 82 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ +G GG + P Sbjct: 83 HRRWILADAARVRRGPGPDGTEPEGAGPGGSGSEKMAPGSTGSE 126 >gi|297617508|ref|YP_003702667.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145345|gb|ADI02102.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 314 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I + ++ L+ A++ G P + N+ + + P+ ++ K L Sbjct: 75 IRSLRKKTGLSQREFAKRLGWSPATVNRYENGALP----SPAHNTVLKWL 120 >gi|229145225|ref|ZP_04273615.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228638236|gb|EEK94676.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] Length = 113 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + ++ LT LA + L +R R S ++ KI + Sbjct: 2 VGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGE-----RNISMLTLQKIAVGLEVS 56 Query: 69 ICQ 71 + Sbjct: 57 PDE 59 >gi|30020775|ref|NP_832406.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229127990|ref|ZP_04256973.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|29896327|gb|AAP09607.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228655457|gb|EEL11312.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] Length = 119 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + ++ LT LA + L +R R S ++ KI + Sbjct: 8 VGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGE-----RNISMLTLQKIAVGLEVS 62 Query: 69 ICQ 71 + Sbjct: 63 PDE 65 >gi|77458352|ref|YP_347857.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382355|gb|ABA73868.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1] Length = 182 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 53/193 (27%), Gaps = 22/193 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + L+ LAR++G+ + + ++ + PS S+ K+L ++ Sbjct: 4 GSRLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSVSSLKKLLEGIPMSL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPH 127 + G P+ P S Sbjct: 59 ADFFTFDQPPREHQY-VFRANEQPDLGRHGLRLLLIGASVPSRQMRLLREQYAPGASSGE 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLI 186 I + ++ T+ T L ++ + V GD Sbjct: 118 EPIVHAEGEECGLVTRGTVE---------LTVDGQVSVLSAGDGYYFPTTLPH----KFR 164 Query: 187 SRRGRSIDLMSLN 199 + +++S N Sbjct: 165 NIGADEAEIISAN 177 >gi|323126522|gb|ADX23819.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 112 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + + LT +A+K G+ ++ ++ + + + +I + Sbjct: 4 ERLKTLRKEAGLTQEEVAKKLGISRPAYTYWEKGEKKPTP-----DKLTQIANLFGVS 56 >gi|288917479|ref|ZP_06411845.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288351182|gb|EFC85393.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 98 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ ++ + +R + LAR AG+ ++ + + G P E + + L Sbjct: 32 ELGRSVRELRQRRGWSQEELARAAGMTQSAVARFEAGGTV--PTLPVLERLAEALD 85 >gi|256545809|ref|ZP_05473165.1| UDP-glucose 6-dehydrogenase [Anaerococcus vaginalis ATCC 51170] gi|256398505|gb|EEU12126.1| UDP-glucose 6-dehydrogenase [Anaerococcus vaginalis ATCC 51170] Length = 490 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 17/181 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S +K+ + + + NLT L G++ T +K + PS E + Sbjct: 1 MKKLSIEKLSKTVSDKRKEKNLTQKKLEEITGINRTMISKLESQNYI-----PSIEQLES 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + I L + +K + +G G + + N V + Sbjct: 56 LSDTLEFEITDLFQDDKNKVNKKISNKKYN--IAVAGTGYVGLSIATLLSQHNHVTAVDI 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD---ILILNSAIQVNCGDRLLIKPRT 177 + + QD + + D L+ D ++I T Sbjct: 114 IKEKVDLINERKSP-------IQDEYIEKYLEEKDLDLTATLDGEAAYRNADFVVIAAPT 166 Query: 178 G 178 Sbjct: 167 N 167 >gi|228932646|ref|ZP_04095521.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827018|gb|EEM72777.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 156 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 5/54 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + T LA K G+ + +R P+ E + K+ N Sbjct: 9 IKELRIAKGWTQKSLAEKLGVSSQVISNWERAYT-----SPNQEDLIKLAKVFN 57 >gi|228943047|ref|ZP_04105548.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955929|ref|ZP_04117866.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228976620|ref|ZP_04137063.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783089|gb|EEM31225.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803756|gb|EEM50438.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816632|gb|EEM62756.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 60 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + T LA+K+G+ + ++ + G ++P+ ++I KI A +L Sbjct: 2 IREARLQKGWTQLDLAKKSGVPQPTISQIE----SGERKYPTYQNIKKIAEALGIKTEEL 57 Query: 73 L 73 + Sbjct: 58 M 58 >gi|323350704|ref|ZP_08086365.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322123124|gb|EFX94815.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 169 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 38/145 (26%), Gaps = 5/145 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 3 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL + ++ Y+ S GF+ + P Sbjct: 58 TTDYLLLEDSNKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152 + ++ + Sbjct: 118 KFTALVWLTFFLLIASTMAINKALK 142 >gi|320008066|gb|ADW02916.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 190 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + I R E+ ++ + LAR+AGL + ++ + +I Sbjct: 17 VGAQIRRRREQRGMSSAELARRAGLGKATLSQLEAGRGNPTIETLDALAIA 67 >gi|257791197|ref|YP_003181803.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488068|ref|ZP_07946646.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325831244|ref|ZP_08164536.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475094|gb|ACV55414.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912819|gb|EFV34350.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325486845|gb|EGC89292.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 147 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 31/124 (25%), Gaps = 3/124 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + R+ + NLT LARK + + ++ + + Sbjct: 3 IGDVLVRIRKERNLTQEDLARKLYVTRQAVSRWENGETTPGI---DMCKLIAATCDVPVA 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + +E + S + G + E+ Sbjct: 60 LLLEMPDGAYCQSCGMPFYQEKDHGTEADGSLSADYCSWCYANGAFLEDETLEELIERCA 119 Query: 129 GIYA 132 A Sbjct: 120 PFMA 123 >gi|326440324|ref|ZP_08215058.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 275 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 6/45 (13%), Positives = 14/45 (31%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + + + T LA++ G T + + R+ Sbjct: 17 GARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPTPRFAK 61 >gi|212703137|ref|ZP_03311265.1| hypothetical protein DESPIG_01176 [Desulfovibrio piger ATCC 29098] gi|212673403|gb|EEB33886.1| hypothetical protein DESPIG_01176 [Desulfovibrio piger ATCC 29098] Length = 117 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 2/81 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + A + G+ S ++ +R + R+ E I +IL + Sbjct: 17 VGANITARRKLLGWNQAAFAERLGMGADSLSRIERGLVA--PRFQRLEEIAEILECSVAE 74 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 + + ++E Sbjct: 75 LFMTQEDLEKYRINFSSPKQE 95 >gi|307154482|ref|YP_003889866.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984710|gb|ADN16591.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 80 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 4/65 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + E+ LT LA K G+ T+ ++ E + ++ A +L Sbjct: 9 IAILREKAGLTQRELADKVGVTETTIRNYEKGRSVLEW----IERVIRLCDALECAPNEL 64 Query: 73 LDLPF 77 ++ Sbjct: 65 IEYLE 69 >gi|182418674|ref|ZP_02949950.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237669723|ref|ZP_04529700.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377451|gb|EDT75006.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237654797|gb|EEP52360.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 171 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ I ++ + N++ +A+K + ++++ + R P+ ++ KI + Sbjct: 8 KVGNNIKKIRKEKNISQKDMAKKLNMPSSTYSNYENNN-----REPNALTLKKIADVLSV 62 Query: 68 TICQ 71 + Sbjct: 63 DVHD 66 >gi|329577403|gb|EGG58858.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 180 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T Q + + +E+ G+ + P N+ V + Sbjct: 57 TPEQFFSQQPLEQKIAYNEEESTLYY----DEEHGYELKWLIPASNEKEMEPVIITFDKN 112 Query: 128 NGI 130 Sbjct: 113 GEY 115 >gi|323490759|ref|ZP_08095961.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323395641|gb|EGA88485.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 172 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 51/158 (32%), Gaps = 14/158 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN-- 66 I + + + LT LA + + + ++ +R + ES+ KI A N Sbjct: 6 IGVTLKSLRKERKLTLKELAEQTNVSISFLSQVERGKS-----SVTLESLRKIADALNVD 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ + +D + +K L + + + P + G P S Sbjct: 61 PSLFFANETEKTDWESRLEKFHYKDLSHGVKEANLVPMLVIMKPA----ESEGNPFAHSG 116 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 + ++ + + + ++ ++ + Sbjct: 117 YEFLFVLDG---VLTVEVDGERTELTERQSIMFDARKR 151 >gi|319946276|ref|ZP_08020516.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747658|gb|EFV99911.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 158 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56 Query: 69 ICQ 71 Sbjct: 57 YID 59 >gi|312879205|ref|ZP_07739005.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] gi|310782496|gb|EFQ22894.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] Length = 134 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 10/132 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + L LA + G+ ++ +R R S + + + A + Sbjct: 5 GSRIREARKARGLEQKELAERMGISAAFLSRIERGE-----RGCSLDLLRRASAVLGCPL 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +L + +++ LL +G + + Sbjct: 60 AELAEET-----PRPERQALEDLLDLAVREHPEVALYLRHLSGKAGDLTEEERRFLADHL 114 Query: 130 IYAIQTQDTRHK 141 A+ D + Sbjct: 115 KLALGQADEALR 126 >gi|260662801|ref|ZP_05863695.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260552882|gb|EEX25881.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 322 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ + A + G+ S +K + G P I ++ + Sbjct: 3 LADKITNLRKKEGWSQEEFAERMGVSRQSISKWE-----GGRSTPDMNKILQMSELFGVS 57 >gi|255280652|ref|ZP_05345207.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255268589|gb|EET61794.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 47 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 20/41 (48%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + I ++ + H++T LA G+ S +K +R + + Sbjct: 5 LAANISKLRKEHSMTQEQLAEALGVTFASVSKWERGVSQTK 45 >gi|225573231|ref|ZP_03781986.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] gi|225039363|gb|EEG49609.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] Length = 217 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + + LA G++ S +K +R +P+ E++ KI+ T Sbjct: 6 LGENIQIIRKHRKMKQQELADAIGINLQSLSKIERGVN-----YPTFETLEKIINVLGVT 60 Query: 69 ICQLLDLPFSDGRT 82 +LL + Sbjct: 61 PNELLTGEWEQTSH 74 >gi|210623799|ref|ZP_03294059.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] gi|210153381|gb|EEA84387.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] Length = 359 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + +++ + LA + + S +K + P+ E + +I + Sbjct: 5 EKIMNLRKKNGWSQEELAERLDISRQSVSKWESGESV-----PTLEKLIRISEIFEVS 57 >gi|182625365|ref|ZP_02953138.1| putative helix-turn-helix domain protein [Clostridium perfringens D str. JGS1721] gi|177909362|gb|EDT71814.1| putative helix-turn-helix domain protein [Clostridium perfringens D str. JGS1721] Length = 224 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I E+ ++ S LAR+ G+ P K + PS E KI A + Sbjct: 2 NLNEKITFYREKKGISKSQLAREIGVSPAYITKLENGEKT----NPSLELKVKIANALEQ 57 Query: 68 T 68 Sbjct: 58 P 58 >gi|303229830|ref|ZP_07316610.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-134-V-Col7a] gi|302515590|gb|EFL57552.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-134-V-Col7a] Length = 90 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E I + ++T + L+ G+ + +K + PS +++ KI A Sbjct: 29 QIIENIVKARIEAHMTQTQLSEVTGITQSDISKIENGNGN-----PSLKTLRKIAHAFG 82 >gi|302382071|ref|YP_003817894.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192699|gb|ADL00271.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 69 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 ++ + + LT + LA +AG+ + N + Sbjct: 5 RLGSRLKEIRTEAGLTQAELADRAGVSRKTINTVENGV 42 >gi|262194743|ref|YP_003265952.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262078090|gb|ACY14059.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 260 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E+ L+ + LA+ AG++ ++ N+ R P TE + + AA ++ Sbjct: 15 GDRLVSFLEKRELSQTELAKMAGIERSTLNRLANN-----KREPRTEEVEWLAAALKISV 69 Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92 +L+ D E+ E+E L Sbjct: 70 DELVAGVEFDSEPPERDEREAEL 92 >gi|255316610|ref|ZP_05358193.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 116 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I +R + LA+KAGL + +R + R SIFKI A Sbjct: 10 IGKRIRNYRKRAGYSQEALAKKAGLFHAYLGQIERGESKASLR-----SIFKIANALEMP 64 >gi|169830948|ref|YP_001716930.1| helix-turn-helix domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169637792|gb|ACA59298.1| helix-turn-helix domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 123 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E + R+ R L + +A G++ ++ +R + PS +++ K+ Sbjct: 2 NRFGETLKRLRHRMGLRQNDVAGMLGVERSTVANWERGVKQ-----PSLDTLIKLSETFG 56 Query: 67 ETICQ 71 ++ + Sbjct: 57 VSLDE 61 >gi|209551516|ref|YP_002283433.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537272|gb|ACI57207.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 125 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EAI ++ R ++ +A + P + + G+ P+ + + + Sbjct: 1 MTPF-----GEAIRKLRARKGVSQKEMAEALNVSPAYLSALE----HGKRGLPTFDLLQR 51 Query: 61 ILAATNETICQ 71 I N + Sbjct: 52 IAGYFNIIWDE 62 >gi|157369697|ref|YP_001477686.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157321461|gb|ABV40558.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 189 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/159 (9%), Positives = 48/159 (30%), Gaps = 10/159 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS------TESIFKI 61 ++ + + + ++ + LA++ G+ + ++ +R + ++ ++ Sbjct: 11 RLAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLCSAYGLTMSRL 70 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L+ + +LL + P + F G P Sbjct: 71 LSEVEDEPPELLHREQQTVWVDRASGFHRCSVSPPAALYKAEFIECTLEAGAVIAY-DAP 129 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 I + + ++ + + + + GD L Sbjct: 130 SIHALEHHLWLLAGRL-ELTLEGRTFQ--LEPGDCLRYR 165 >gi|329767054|ref|ZP_08258582.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] gi|328837779|gb|EGF87404.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] Length = 181 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 5/92 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + R+ + NLT L + L ++ +R PS E+ F IL Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLA-----SPSMETFFNILQVLGCA 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 D + + E + Sbjct: 59 PKDFFDKESTSQKVYYSLEDQTSYEETDEGYE 90 >gi|291539157|emb|CBL12268.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 184 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 5/97 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S ++I +AI + +T A++ G + K + I + + +I Sbjct: 1 MSSSEEIGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEI-----LLKIDVLKQIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 N +LL ++ + + S Sbjct: 56 NELNVPWQELLFAKDTNTPKDNTTAEYPSYEFHTMSD 92 >gi|254284054|ref|ZP_04959022.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] gi|219680257|gb|EED36606.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] Length = 219 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 9/149 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + +T S L++ + L ++ +R PS +++ I A TI Sbjct: 42 IRDLRKARGMTLSELSKISELSQGYLSQVERGISV-----PSIKALHSISRALGVTISWF 96 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRSPHNG 129 + + + + G D + P ++ + P S + Sbjct: 97 FQNQVTGEDPAMRAWVVRSGNRRKLTFNTGIVDELLSPNLSRQIEMLKCTFPPGTSSGDV 156 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 Y Q ++ L I++ Sbjct: 157 PYTHQGEEAGIILSGKLNLW-IEDTHIVL 184 >gi|71279451|ref|YP_269397.1| umuD protein [Colwellia psychrerythraea 34H] gi|71145191|gb|AAZ25664.1| umuD protein [Colwellia psychrerythraea 34H] Length = 137 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 11/108 (10%) Query: 111 TGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163 + P S I + SM + GDILI++ ++ Sbjct: 8 AEAGISGFESPAAEYKELGLSLDQLIIKHPNATFIGQASGQSMKGVGIFDGDILIVDRSL 67 Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 GD ++ G V K++ + L+S + + ++ D Sbjct: 68 TARNGDVIV-ANYNGCFVCKLIDKVQA---RLLSASADFAPVSITPED 111 >gi|297543548|ref|YP_003675850.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841323|gb|ADH59839.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 67 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ LT LA+K G+ P ++ + R P E+ KI N TI + Sbjct: 4 LKELRIKYKLTQKELAKKLGVTPDYISQIEGG------RIPGMETAIKIANFFNTTIDDI 57 Query: 73 L 73 Sbjct: 58 F 58 >gi|254385485|ref|ZP_05000812.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194344357|gb|EDX25323.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 192 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 8/133 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I +R ++ + LA +GL ++ +R PS SI++I A + Sbjct: 13 EVGRVIRAWRKRRGISMASLAAGSGLSQPFLSQLERGLAT-----PSLSSIYRIAEALDV 67 Query: 68 TICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 T L P G + + I + + G + P Sbjct: 68 TPGTFLRPPDRPGAVSHESDPQVIRVSEAAGQVARVLIPGGRSGLMEAYEHHFEPGR--G 125 Query: 127 HNGIYAIQTQDTR 139 G + +D Sbjct: 126 ERGWFEHPGEDFL 138 >gi|111656869|ref|ZP_01407706.1| hypothetical protein SpneT_02001881 [Streptococcus pneumoniae TIGR4] gi|116516030|ref|YP_817335.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148989946|ref|ZP_01821229.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|148992033|ref|ZP_01821807.1| hypothetical protein CGSSp9BS68_11120 [Streptococcus pneumoniae SP9-BS68] gi|148998083|ref|ZP_01825596.1| transcriptional regulator, putative [Streptococcus pneumoniae SP11-BS70] gi|149006908|ref|ZP_01830589.1| transcriptional regulator, putative [Streptococcus pneumoniae SP18-BS74] gi|149023820|ref|ZP_01836281.1| aspartyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|168484056|ref|ZP_02709008.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|168486222|ref|ZP_02710730.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|168494125|ref|ZP_02718268.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|168575990|ref|ZP_02721895.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|169832746|ref|YP_001695479.1| hypothetical protein SPH_2309 [Streptococcus pneumoniae Hungary19A-6] gi|183603223|ref|ZP_02713383.2| conserved domain protein [Streptococcus pneumoniae SP195] gi|183603587|ref|ZP_02715791.2| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|194398055|ref|YP_002038707.1| hypothetical protein SPG_2056 [Streptococcus pneumoniae G54] gi|221232829|ref|YP_002511983.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225855609|ref|YP_002737121.1| hypothetical protein SPJ_2142 [Streptococcus pneumoniae JJA] gi|225857692|ref|YP_002739203.1| hypothetical protein SPP_2174 [Streptococcus pneumoniae P1031] gi|225859875|ref|YP_002741385.1| hypothetical protein SP70585_2226 [Streptococcus pneumoniae 70585] gi|225861935|ref|YP_002743444.1| hypothetical protein SPT_2128 [Streptococcus pneumoniae Taiwan19F-14] gi|237650451|ref|ZP_04524703.1| transcriptional regulator, putative [Streptococcus pneumoniae CCRI 1974] gi|237820955|ref|ZP_04596800.1| transcriptional regulator, putative [Streptococcus pneumoniae CCRI 1974M2] gi|298229785|ref|ZP_06963466.1| transcriptional regulator, putative [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254105|ref|ZP_06977691.1| transcriptional regulator, putative [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501621|ref|YP_003723561.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254924|ref|ZP_07341008.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|303264524|ref|ZP_07350443.1| hypothetical protein CGSSpBS397_01200 [Streptococcus pneumoniae BS397] gi|303267196|ref|ZP_07353062.1| hypothetical protein CGSSpBS457_05975 [Streptococcus pneumoniae BS457] gi|303270043|ref|ZP_07355765.1| hypothetical protein CGSSpBS458_11298 [Streptococcus pneumoniae BS458] gi|307068736|ref|YP_003877702.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|307128380|ref|YP_003880411.1| hypothetical protein SP670_2261 [Streptococcus pneumoniae 670-6B] gi|116076606|gb|ABJ54326.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147756093|gb|EDK63136.1| transcriptional regulator, putative [Streptococcus pneumoniae SP11-BS70] gi|147761509|gb|EDK68474.1| transcriptional regulator, putative [Streptococcus pneumoniae SP18-BS74] gi|147924731|gb|EDK75816.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|147929082|gb|EDK80093.1| hypothetical protein CGSSp9BS68_11120 [Streptococcus pneumoniae SP9-BS68] gi|147929616|gb|EDK80609.1| aspartyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|168995248|gb|ACA35860.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|172042681|gb|EDT50727.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|183570711|gb|EDT91239.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|183572237|gb|EDT92765.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|183574065|gb|EDT94593.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183575838|gb|EDT96366.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|183578106|gb|EDT98634.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194357722|gb|ACF56170.1| conserved domain protein [Streptococcus pneumoniae G54] gi|220675291|emb|CAR69884.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225721839|gb|ACO17693.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|225723335|gb|ACO19188.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|225726035|gb|ACO21887.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|225727179|gb|ACO23030.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|298237216|gb|ADI68347.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|301795045|emb|CBW37510.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|301800866|emb|CBW33523.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] gi|301802790|emb|CBW35564.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302598106|gb|EFL65168.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|302640426|gb|EFL70851.1| hypothetical protein CGSSpBS458_11298 [Streptococcus pneumoniae BS458] gi|302643260|gb|EFL73541.1| hypothetical protein CGSSpBS457_05975 [Streptococcus pneumoniae BS457] gi|302645894|gb|EFL76122.1| hypothetical protein CGSSpBS397_01200 [Streptococcus pneumoniae BS397] gi|306410273|gb|ADM85700.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|306485442|gb|ADM92311.1| conserved domain protein [Streptococcus pneumoniae 670-6B] gi|327388855|gb|EGE87203.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332071194|gb|EGI81689.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] gi|332071389|gb|EGI81883.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332071555|gb|EGI82048.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332198540|gb|EGJ12623.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] gi|332198731|gb|EGJ12813.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] gi|332198933|gb|EGJ13014.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 68 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R L + LA+ AG+ + + +R PS KI NE Sbjct: 2 QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYT-----PSIIIALKISQIFNE 56 Query: 68 T 68 T Sbjct: 57 T 57 >gi|306826280|ref|ZP_07459614.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431556|gb|EFM34538.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 116 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 16/40 (40%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + + R L + LA+ AG+ + + +R Sbjct: 50 LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTP 89 >gi|302879146|ref|YP_003847710.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581935|gb|ADL55946.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 117 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I ++ N T + LA + G+D + ++ +R PS + K+ A + Sbjct: 11 ANIAERRKKLNWTQAELAERIGVDTETVSRFERGSN-----LPSLHRLEKLAEALKIPLY 65 >gi|295401476|ref|ZP_06811446.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976526|gb|EFG52134.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 179 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 47/138 (34%), Gaps = 8/138 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I++ I + ++ +LT L+ K GL + ++ +R + S+ KI A Sbjct: 2 EEIYKKIRDLRKQRDLTLKELSEKTGLSISFLSQVERGST-----SLAITSLKKIADALE 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I + + + E + S + G G + V Sbjct: 57 VPITDFFENEEN---KNFVVKLENQKPFRIEGSSAEYVRLGGNFNGRSLEPLIVTLEPGF 113 Query: 127 HNGIYAIQTQDTRHKTQD 144 +++ ++ + + Sbjct: 114 QGDVFSHPGEEFYYILEG 131 >gi|288923632|ref|ZP_06417738.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288345013|gb|EFC79436.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 284 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K + + I ++ LAR+AG+ ++ +R R PS E + + Sbjct: 1 MAAIHVKDVGDFIREQRHGAQISLRQLARQAGVSNPYLSQIERG-----LRRPSAEILQQ 55 Query: 61 ILAATNET 68 I A + Sbjct: 56 IAKALRIS 63 >gi|326317279|ref|YP_004234951.1| XRE family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374115|gb|ADX46384.1| transcriptional regulator, XRE family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 469 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ L+ LA+ GL P+ N+ ++ R + + KI + + Sbjct: 10 LRKLRAERGLSQIALAQALGLSPSYLNQIEQNQ-----RPLTVSVLLKIHRVLGVDVQEF 64 Query: 73 LDLPF 77 + Sbjct: 65 SEDEE 69 >gi|256026281|ref|ZP_05440146.1| ImpA UV protection protein [Escherichia sp. 4_1_40B] Length = 145 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + ++ + + SM + GD+L+++ A + GD ++ + G+ Sbjct: 39 EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 K L+ R +++ +S + + T+ +I + Sbjct: 98 FTVKRLLLRPRLTLEPVSDSPEF--RTLYPENICIFGVV 134 >gi|163846695|ref|YP_001634739.1| helix-turn-helix domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524502|ref|YP_002568973.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667984|gb|ABY34350.1| helix-turn-helix domain protein [Chloroflexus aurantiacus J-10-fl] gi|222448381|gb|ACM52647.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 165 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 30/125 (24%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ I + I R+ T LA + + + + + R + + Sbjct: 17 NEPIGQRIARLRNELGWTQQELAERLAISRVAVSHIELGLSVPGERTITLLAGLFKREPL 76 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ L + + V P T + E R Sbjct: 77 QLVAGTDYPPARAERLPFVTCRYTEVELQLALLARDCEWIAAVGPIATGRATAILDEWRI 136 Query: 126 PHNGI 130 + Sbjct: 137 RLERL 141 >gi|262368260|ref|ZP_06061589.1| SOS-response transcriptional repressor [Acinetobacter johnsonii SH046] gi|262315938|gb|EEY96976.1| SOS-response transcriptional repressor [Acinetobacter johnsonii SH046] Length = 204 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 19/182 (10%) Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 S+ +++ + + + E EK P S P G ++ Sbjct: 12 SLQELMGPEGKPSPTINTVLEQIAVQNELVEKLGLTAVLPKSKVSIPVSLERIPAGPAFS 71 Query: 117 T-VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 T + + + SML + D +I++ +I+ D ++ Sbjct: 72 TKDEQDKALDLNEFLIHNPISTFIAYVDSESMLDAGFEINDPIIVDRSIEAKHYDIVIAL 131 Query: 175 PRTGDIVAKVL-----------ISRRGRS------IDLMSLNCCYPVDTVEMSDIEWIAR 217 K L G + L + N Y S I Sbjct: 132 IDNSSSTIKRLMITSKMSKSEIKEIFGDEDYPLPDLWLKAENPRYNHIIPNDSQTISIWG 191 Query: 218 IL 219 ++ Sbjct: 192 VV 193 >gi|257064611|ref|YP_003144283.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792264|gb|ACV22934.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 141 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I + LT LA GL ++ + R PS + + + + Sbjct: 3 VGERIRALRRSAGLTQKELAASIGLTESAVRNYELG-----LRTPSDDQLAAMADSIG 55 >gi|225017731|ref|ZP_03706923.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum DSM 5476] gi|224949524|gb|EEG30733.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum DSM 5476] Length = 70 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + RH L S LA +A + + + +R T + +IL Sbjct: 7 LKELRARHGLNQSELADRADVSRQTISLIERGNYSPSITLALT--LARILE 55 >gi|149202181|ref|ZP_01879154.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035] gi|149144279|gb|EDM32310.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035] Length = 468 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ T + +ARK + P+ N + R S + + I A Sbjct: 6 IGPRLRQLRRERGQTQADMARKLDVSPSYINLLENNQ-----RSLSVQMLMSIADAYAVD 60 Query: 69 ICQ 71 Sbjct: 61 WRD 63 >gi|146298229|ref|YP_001192820.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152647|gb|ABQ03501.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 138 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%) Query: 1 MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M++ S K I I R+ E ++ LA+ G + + + E + Sbjct: 1 MSTLSRPKHIGRNISRIRELRDMKQEALAQALGTSQQTISAIENSETID---DAKLEEVA 57 Query: 60 KILAATN 66 K L T Sbjct: 58 KALGVTP 64 >gi|50954710|ref|YP_061998.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951192|gb|AAT88893.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 184 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 19/46 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 I E + ++ + LAR+ G+ T ++ +R + R Sbjct: 8 IGERLHQLRVERGRSVRALARETGVSATLLSQIERGLSDPSLRTLR 53 >gi|77408842|ref|ZP_00785569.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae COH1] gi|77172528|gb|EAO75670.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae COH1] Length = 71 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R + + LA+ G+ + + +R PS KI E+ Sbjct: 5 LKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYT-----PSVIIAMKISQVFKES 59 >gi|332653067|ref|ZP_08418812.1| transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518213|gb|EGJ47816.1| transcriptional regulator [Ruminococcaceae bacterium D16] Length = 285 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R R L+ LA + G+ + +K + + + ++L + +T Sbjct: 5 IGEIIQRERTRLGLSQEKLAEQVGVSRQAVSKWELG--DAVPDTDKLVPLARVLEISVDT 62 Query: 69 ICQLLDLPFSDGRTTEKKEK 88 + + +++K Sbjct: 63 LLDHHPQETEETPKEIEEKK 82 >gi|326319182|ref|YP_004236854.1| peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376018|gb|ADX48287.1| Peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp. avenae ATCC 19860] Length = 234 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 2/97 (2%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D SM P GD++ +++ ++ + G + + Sbjct: 132 HEWLERRSLRARDLIAVAVGDDSMQPSLHPGDVVAVDTREPSPADGQVFVVDYEGACLVR 191 Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARIL 219 ++ + L + N +P + + R++ Sbjct: 192 RVVRDS-GAWWLAAENALRFPRKQLTAPSARLVGRVV 227 >gi|240141318|ref|YP_002965798.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240011295|gb|ACS42521.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 209 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 10/145 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60 ++ + I R+ + +NL+ S LA ++G+ + ++ +R R SI + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLTTIWRLSQALDVSIERV 85 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + E + + ++ + + ++ + + + G + Sbjct: 86 LATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADAGGVLESDAH 145 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145 ++ Sbjct: 146 QRGSVE---SLSVLEGSFEVDVAGE 167 >gi|163853865|ref|YP_001641908.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163665470|gb|ABY32837.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 209 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 10/145 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60 ++ + I R+ + +NL+ S LA ++G+ + ++ +R R SI + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + E + + ++ + + ++ + + + G + Sbjct: 86 LATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADAGGVLESDAH 145 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145 ++ Sbjct: 146 QRGSVE---SLSVLEGSFEVDVAGE 167 >gi|223932874|ref|ZP_03624870.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223898455|gb|EEF64820.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 168 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 8/109 (7%), Positives = 29/109 (26%), Gaps = 2/109 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + L+ LA G++ + ++ + + +++ + Sbjct: 1 MNRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIK--SDKAQALADYFEVEVGYL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + K K+ + + G G + + Sbjct: 59 LGYNEGHRRMYELFGKHPKKGAMGIIDFDELLEAHELGYIKDGKILDEL 107 >gi|332980702|ref|YP_004462143.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698380|gb|AEE95321.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 80 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + LT LA G+D T+ K + PS + KI A + Sbjct: 14 LKERRNAKGLTQEQLAALIGVDRTTITKIENGSAR-----PSVNNAKKIAQALDFDWTIF 68 Query: 73 LDLPFSDGRTT 83 ++ + T Sbjct: 69 FNINDNQTSET 79 >gi|299132893|ref|ZP_07026088.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593030|gb|EFI53230.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 118 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + L+ + LA KAGL P S + + R PS +++ + A + T Sbjct: 12 KRLREARDLRGLSQALLAAKAGLPPASVSHFESG-----PRKPSFDNLKALAKALDVTTD 66 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 LL + + E + L+ S Sbjct: 67 YLLGRSETPDASAETVGRLHRDLHKLSSQDLELAQD 102 >gi|291534827|emb|CBL07939.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis M50/1] Length = 382 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 11/68 (16%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT E I + L A K G+ P + +K + PS E++ Sbjct: 5 MTM------AENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGLS-----CPSVENLCV 53 Query: 61 ILAATNET 68 I + + Sbjct: 54 ISEILDVS 61 >gi|210634420|ref|ZP_03298108.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] gi|210158823|gb|EEA89794.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] Length = 351 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 40/142 (28%), Gaps = 5/142 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I +T +A++ G+ + NK +R S+ ++ T Sbjct: 3 ISEIIRSRRRELGMTQEQVAQRLGVSAPAVNKWERGIC--YPDITLIPSLARLFETDANT 60 Query: 69 --ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + ++ + + ++PT + + + + Sbjct: 61 LLSFEPELREEESLAIQREVDRLVREEGYEAGFDYAQEKMRLYPTSD-ELAIVLTQYLDG 119 Query: 127 HNGIYAIQTQDTRHKTQDTSML 148 + I + D + Sbjct: 120 SLVLRQIPGAEGYRPVLDDAYA 141 >gi|332655408|ref|ZP_08421147.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515703|gb|EGJ45314.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 166 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + LT LA++ G+ + + R P+++++ + + Sbjct: 2 GQRIQELRKDAGLTQEQLAQRIGVSMAAVRNYENG-----LREPNSKAMAALERFFKVS 55 >gi|323693418|ref|ZP_08107631.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] gi|323502526|gb|EGB18375.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] Length = 180 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 53/174 (30%), Gaps = 9/174 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ E + L+ L+R +G+ + + +R P+ +++KI Sbjct: 5 VAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGN-----PTISTLWKISNGMKVP 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L P + + + E + L + F + + + E + Sbjct: 60 FDALTVRPENLYQIVKTSEIQPLLEDNGKVRNYPVFPDDENRRFAVY-YLELEEGSFWES 118 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIV 181 + + + + Y I+ + D + GD Sbjct: 119 EPHLKGAAEFITVFKGQVEI--YADSQPFIVGQGESIRFRADTVHSYKNAGDGT 170 >gi|319744195|gb|EFV96562.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 129 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ +LT +A K G+ ++ +R + P+ E+ K+ N T+ Sbjct: 17 ERLKTLRKQAHLTQKEIAEKLGISQPAYGDWERGV-----KMPTHENSKKLARLFNITLD 71 Query: 71 QLLDLPF 77 L+ Sbjct: 72 TLMGNQE 78 >gi|307710471|ref|ZP_07646908.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307618734|gb|EFN97873.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 158 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 38/146 (26%), Gaps = 6/146 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + H+LT A+ G+ S ++ + STE + +I N + Sbjct: 2 IGENIKTLRKTHDLTQPEFAKIIGISRNSLSRYENGIS-----SVSTELVDRICKKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + E + + + G+ F + Sbjct: 57 YLD-IVGEEKMLTPVEDYQLTLKIELIKERGANILAQLYRFQDEQGIEFDDSANPWVLMS 115 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKG 154 + + + Y Sbjct: 116 DDLSDLINTKIYLVATFDEVERYNGY 141 >gi|223984183|ref|ZP_03634332.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM 12042] gi|223963841|gb|EEF68204.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM 12042] Length = 321 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E I + + N+T A G+ + + +R E P ++ KI Sbjct: 2 KTLGEKIAGLRQEKNMTQQAFADVMGVTRQAISNWERNKTE-----PDVAALKKIGQIFG 56 Query: 67 ETICQ 71 + Sbjct: 57 VDMND 61 >gi|205375274|ref|ZP_03228064.1| post-exponential-phase response transcriptional regulator [Bacillus coahuilensis m4-4] Length = 107 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 4/79 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ N++ + LA +AG+ + + +R + PS + + K+ A + Sbjct: 2 IGERVKQLRLEKNMSMTELAERAGVAKSYLSAIERNL----QKNPSVQFLEKVAQALGVS 57 Query: 69 ICQLLDLPFSDGRTTEKKE 87 + +L D + + Sbjct: 58 MDSILFNQQEDKQAVDPDW 76 >gi|195940391|ref|ZP_03085773.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. EC4024] Length = 175 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 44/154 (28%), Gaps = 13/154 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H + + + + + S LA + G+ + +R P+ +++K Sbjct: 1 MDITQH--LATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNES-----SPTVSTLWK 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTV 118 I N + + +++ + + L+ S G + Sbjct: 54 IATGLNVPFSAFITPESDPQAVFDPQQQAMVVKPLFPWDDQLKFDHFSITLSPGALSEST 113 Query: 119 GVPEIRSPH----NGIYAIQTQDTRHKTQDTSML 148 H +G+ +Q Q S Sbjct: 114 PHESGVIEHVVVISGVLDMQIDGIWRTIQADSGA 147 >gi|182414116|ref|YP_001819182.1| LexA family transcriptional regulator [Opitutus terrae PB90-1] gi|177841330|gb|ACB75582.1| transcriptional repressor, LexA family [Opitutus terrae PB90-1] Length = 199 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 56/219 (25%), Gaps = 37/219 (16%) Query: 1 MTSFSHKKIWEAIDRM--AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT + +K+ + I + +T + G + + R + Sbjct: 4 MTE-TQRKVLDFIRARVRRSQRGVTFREVQAAFGWRSS-------NAAQDHVRALREAGL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + + + I + P Sbjct: 56 LR---------------------SDLRGARSILPVTIHDGIPIFGTIPAGIPIDAASENG 94 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 ++ P + + SM+ + GD +++ +A GD ++ Sbjct: 95 EFLDV-EPSLFDSKPGIPVFALRVRGHSMVNAGIKDGD-VVVLAARDPRKGD-VVAALVD 151 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 + K RGR+ L + + + ++ Sbjct: 152 KESTLKRYCVERGRAY-LKAEGPGFDDI-LPAEELIIQG 188 >gi|91202186|emb|CAJ75246.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 121 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 16/36 (44%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + E+ T S A+ G+ ++ ++ + + Sbjct: 6 IKELREKLGATQSEFAKALGISFSTVSRWESGISQP 41 >gi|302387526|ref|YP_003823348.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198154|gb|ADL05725.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 195 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 2/90 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + K+ I + H++T LA K L + +K +R G + +IL Sbjct: 1 MQNNKVGSIIRALRLEHSMTQKQLADKMNLSDKTVSKWERGM--GLPDISLIPELSRILE 58 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + P + K K Sbjct: 59 IDIMHLLSGDMTPNNFTGGNMKNTKYFVCP 88 >gi|296156060|ref|ZP_06838899.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893566|gb|EFG73345.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 190 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 44/161 (27%), Gaps = 20/161 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + N + LAR + + + ++ + + P+ + K+ A Sbjct: 14 RIAQRLRALRAERNWSLDDLARLSSVSRATLSRLENAAV-----SPTASVLGKLCVAYGL 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116 I +L+ + D + + G G + Sbjct: 69 PISRLMHMVEEDFAPHVPRAAQPLWTDASVGFRRRSVSPPAQALSGEALECELDAGVRIT 128 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 P H+ + + S + GD L Sbjct: 129 YDASPRPGLEHH--LILLEGQLQITVDGQS--HNLQPGDCL 165 >gi|187777952|ref|ZP_02994425.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] gi|187774880|gb|EDU38682.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] Length = 384 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 16/215 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I + +T LA G+ S +K + +P + + Sbjct: 1 MINLRGLNIGNCIVHKRKEKGITQEQLADYIGVSKASVSKWESGLS-----YPDILLLPE 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I N ++ +LL + KK F + ++ Sbjct: 56 IATYFNISVDELLGYSPQLTKEDIKKIYSKLSHEFAVRPFDEVMEQCNKLIKKYYSCFPF 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Y+ +D ++ + IL+ + + + T + Sbjct: 116 LLSIIQLLLNYSS-------LIKDDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 168 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 ++++ + I L+ N P D+ I Sbjct: 169 LSEMTLGNSEEVIRLL-DNKLDP---YRGDDVILI 199 >gi|154496299|ref|ZP_02034995.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] gi|150274382|gb|EDN01459.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] Length = 155 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 5/80 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E LT +A K L T+ + + E PS E++ ++ + Sbjct: 53 VSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSE-----PSMETLVQLANLYGVS 107 Query: 69 ICQLLDLPFSDGRTTEKKEK 88 + L+ + E++ K Sbjct: 108 LDYLMCRTDTRIEFNEEEYK 127 >gi|41406396|ref|NP_959232.1| hypothetical protein MAP0298 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394745|gb|AAS02615.1| hypothetical protein MAP_0298 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 502 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + R+ E LT LAR GL + N+ + Sbjct: 35 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRP 72 >gi|313889218|ref|ZP_07822872.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844772|gb|EFR32179.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 179 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 7/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I M LT LA ++ L ++ +R PS +S+ IL A Sbjct: 2 NIGNKIREMRIEKGLTQEELADRSELTKGFISQIERDLT-----SPSVDSLLDILEALGT 56 Query: 68 TICQLLDLPFSDGRTTEKK-EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ ++ E ++ + P RS Sbjct: 57 DPGLFFKREENEKIIFNEEDFFESENEELSYVLDWVVPNAQKNQMEPMRILI-KPGGRSK 115 Query: 127 HNGIYAIQTQDTRHKTQ 143 Y + + Sbjct: 116 EVQPYEGEEFGFVLRGS 132 >gi|296451585|ref|ZP_06893320.1| DNA-binding protein [Clostridium difficile NAP08] gi|296259650|gb|EFH06510.1| DNA-binding protein [Clostridium difficile NAP08] Length = 44 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 KI + I + + NLT LA+ G+ + +K + G Sbjct: 2 QIKIGKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGGS 42 >gi|270291758|ref|ZP_06197974.1| putative transcriptional regulator [Streptococcus sp. M143] gi|270279843|gb|EFA25684.1| putative transcriptional regulator [Streptococcus sp. M143] Length = 68 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 17/43 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 ++ + + R L + LA+ AG+ + + +R Sbjct: 2 QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYTPSI 44 >gi|218532810|ref|YP_002423626.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|254563828|ref|YP_003070923.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|218525113|gb|ACK85698.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] gi|254271106|emb|CAX27113.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 209 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 10/145 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60 ++ + I R+ + +NL+ S LA ++G+ + ++ +R R SI + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + E + + ++ + + ++ + + + G + Sbjct: 86 LATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADAGGVLESDAH 145 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145 ++ Sbjct: 146 QRGSVE---SLSVLEGSFEVDVAGE 167 >gi|118444284|ref|YP_879117.1| LacI/xre family transcriptional regulator [Clostridium novyi NT] gi|118134740|gb|ABK61784.1| Predicted transcriptional regulator, lacI/xre family [Clostridium novyi NT] Length = 221 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 11/214 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL----- 62 ++ I + N+T LA+K G+ + + + E I K+L Sbjct: 3 RVGSKIRDARLKANMTEKQLAKKIGVAEKFIKEVESG--KKVINESVMEKISKVLGKDLN 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T ++ + + K E+ + + +P Sbjct: 61 DVTMSFEAEVYEEEKVQTKKNTKLERVNDVWDDALGSVLKPVPVYGYDMARIIEMRKLPI 120 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 I + G + + K +D M+ KGDI ++ L++ + Sbjct: 121 INNKVEGH--AKDKVLYLKVEDDDMIGSRIAKGDIAFGYITHEIINNSLCLVEYN-DERH 177 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + + + L+S +TV DI + Sbjct: 178 IRQIKRLDSNKLLLISNGNSLRTETVTAKDINVL 211 >gi|16799151|ref|NP_469419.1| hypothetical protein lin0073 [Listeria innocua Clip11262] gi|16412493|emb|CAC95306.1| lin0073 [Listeria innocua Clip11262] Length = 158 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/144 (8%), Positives = 34/144 (23%), Gaps = 12/144 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ + LA + G ++ R P +++ KI N + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGT-----REPDYQTLLKIAEFFNVST- 57 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + + + + +I + + Sbjct: 58 DYLLGRDDNNLADTIAAHIDSNASEEDMKEILAYIEEKRKEHANEEEIDITDIAAKKDAD 117 Query: 131 YAI------QTQDTRHKTQDTSML 148 A + + D Sbjct: 118 VAKFVEENPDFKAVAARVMDDEEA 141 >gi|323485634|ref|ZP_08090973.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323401045|gb|EGA93404.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 289 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/164 (10%), Positives = 44/164 (26%), Gaps = 16/164 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ NLT A + + + +K + +P E + +I ++ Sbjct: 5 ENLQYLRKKQNLTQEQFAEQMEVSRQAVSKWESGQS-----YPEMEKLLQICEQFGCSMD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPL----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 L+ ++ + + + + + F + + + + V I Sbjct: 60 SLIKGDVTEAAKEDSTGYNRHMNRYSIMVSSAVALIIFSVAIIASLDGIVSEAVTSIILF 119 Query: 127 HNGIYAIQTQDTRHKTQDTS---MLPLYRKGDILILNSAIQVNC 167 A+ S Y D Sbjct: 120 VLIGIAV----YILIIAGISHQYYRRRYPDIDNFYTEEQHANFN 159 >gi|220908355|ref|YP_002483666.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864966|gb|ACL45305.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 224 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +R + + + LAR G+ + N + + PS E FKI N I Sbjct: 3 NRLKELRQRRSWSQADLARSLGISRQAVNGFESGKFD-----PSLEMAFKIARLFNVAIE 57 Query: 71 QLLDLPFSDGRTT 83 + T Sbjct: 58 DVFVYEARHSMPT 70 >gi|149921945|ref|ZP_01910388.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817207|gb|EDM76685.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + E LT + LAR AG+ + ++ + PS +++ KI Sbjct: 7 GARVRLLREGRGLTQARLARMAGVASDTISRVESARF-----SPSLDTMIKIADGL 57 >gi|83589109|ref|YP_429118.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572023|gb|ABC18575.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 81 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 A+ R+ + LT S LAR GL S+ ++ PS + +I A N + + Sbjct: 4 ALRRVRLQAGLTQSELARLVGLTRASYTNIEKGHKN-----PSVGTALRIARALNRPVEE 58 Query: 72 LLDLPFSDGRTTEKKEKEIP 91 L + + + + + Sbjct: 59 LFADESPAVQDVKSEGRAMR 78 >gi|24379134|ref|NP_721089.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|290580856|ref|YP_003485248.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|24377038|gb|AAN58395.1|AE014909_11 putative transcriptional regulator [Streptococcus mutans UA159] gi|254997755|dbj|BAH88356.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 81 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 10/86 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + R + + LA+ AG+ + + +R PS FK Sbjct: 1 MPILKN-----RLKELRARDGINQTQLAKLAGISRQTVSLIERNEYT-----PSVVIAFK 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86 I + E + + L + ++ Sbjct: 51 IAKSFGEPVENVFSLMEEENEKVKRS 76 >gi|220931592|ref|YP_002508500.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] gi|219992902|gb|ACL69505.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] Length = 301 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 5/82 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + L LA G+ T+ ++ R+P+ + + K+ N +I Sbjct: 6 SRLRSLRKEKKLRQKDLAGALGVAQTTIANYEQN-----LRFPNQDILNKLADYFNVSID 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92 LL T K + Sbjct: 61 YLLGRSCLRQPTNFTSFKNNHI 82 >gi|311069952|ref|YP_003974875.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|310870469|gb|ADP33944.1| transcriptional regulator [Bacillus atrophaeus 1942] Length = 151 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 4/94 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I +R + + LA +AG+ + +K +R PS + + K+ Sbjct: 2 IGRIIRLYRKRKGYSINQLAVEAGVSKSYLSKIERGVHT----NPSIQFLKKVSETLEVE 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + +L D + T +E+ LL Sbjct: 58 LTELFDAETILHQKTGGEEEWRLLLVQAVQAGME 91 >gi|315500763|ref|YP_004089564.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315418775|gb|ADU15413.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 68 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + R+ + LT L ++GL + +R R P+ ++++I A Sbjct: 2 VGENLKRLRQEKGLTQEVLESRSGLSQQYLSGLERG-----KRNPTIITVYEISQALGVH 56 Query: 69 ICQ 71 + Sbjct: 57 YLE 59 >gi|291302743|ref|YP_003514021.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571963|gb|ADD44928.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 194 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 13/150 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + N+T + LA G+ ++ ++ + R P+ E + + Sbjct: 14 VGPRLRELRRQRNVTLARLAEATGISESTLSRLESGA-----RRPNLELLLPLAKVYGVP 68 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ P + + + F P +P S Sbjct: 69 LDELVGAPTTGDPRVHLRPVHRGGMTFIPLTRRAGGIQSYKMV--------IPGDTSGRE 120 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 + + L D+++ Sbjct: 121 PDLKTHEGYEWMYVLNGRLRLLLGDKDLVL 150 >gi|228926912|ref|ZP_04089978.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936979|ref|ZP_04099721.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822694|gb|EEM68584.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832647|gb|EEM78218.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 118 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I E I + + L L + G+ + +K ++ PS E+I K+ Sbjct: 4 IGERIFELRKEKKLVQEELGKYIGVSKQTISKYEKGTKI-----PSRENIEKLADFF 55 >gi|228960178|ref|ZP_04121835.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799446|gb|EEM46406.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] Length = 118 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + LT + G+ + +K ++ PS E+I K+ N Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKI-----PSRENIEKLADFFNVP 58 Query: 69 ICQLLDLPFSDGRTTEK 85 I L + +++ Sbjct: 59 IDYLFGKSDNSIKSSNN 75 >gi|228966936|ref|ZP_04127974.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228792670|gb|EEM40234.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 118 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + LT + G+ + +K ++ PS E+I K+ N Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKI-----PSRENIEKLADFFNVP 58 Query: 69 ICQLLDLPFSDGRTTEK 85 I L + +++ Sbjct: 59 IDYLFGKSDNSIKSSNN 75 >gi|154687569|ref|YP_001422730.1| Slr [Bacillus amyloliquefaciens FZB42] gi|308175181|ref|YP_003921886.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens DSM 7] gi|154353420|gb|ABS75499.1| Slr [Bacillus amyloliquefaciens FZB42] gi|307608045|emb|CBI44416.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens DSM 7] gi|328555152|gb|AEB25644.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens TA208] gi|328913510|gb|AEB65106.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens LL3] Length = 151 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 6/101 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I R + + LA +AG+ + +K +R PS + + K+ A Sbjct: 2 IGRIIRLYRRRKGYSINQLAVEAGVSKSYLSKIERGVHS----NPSIQFLKKVSATLQVD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + +L D + +++ ++ + G +F Sbjct: 58 LTELFDAETMLHHMGDTEDEWR--IHLVQAVQSGMPKEELF 96 >gi|148263396|ref|YP_001230102.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396896|gb|ABQ25529.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 174 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKA--GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + R+ +LT LA + GLD T K +R + PS + + KI A Sbjct: 30 EIGSRLKRLRMERSLTQKELAVRVSGGLDYTYIGKIERGE-----QLPSLKILLKISEAL 84 >gi|320189654|gb|EFW64311.1| putative repressor protein [Escherichia coli O157:H7 str. EC1212] gi|326338881|gb|EGD62698.1| putative repressor protein [Escherichia coli O157:H7 str. 1125] gi|326340087|gb|EGD63892.1| putative repressor protein [Escherichia coli O157:H7 str. 1044] Length = 113 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 11/98 (11%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDT-----SMLPLYRKGDILILNSAIQVNCGDRLLIK--- 174 + ++ D D S P G +IL G + + Sbjct: 3 NVDRITTFFDVEEGDFAVSMPDDTMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPD 62 Query: 175 --PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210 + K L+ G+ + L LN Y + Sbjct: 63 PLKNEPSMTIKKLV-IDGKLVYLSPLNPRYQSSLLTPE 99 >gi|75761153|ref|ZP_00741144.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904571|ref|ZP_04068647.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74491352|gb|EAO54577.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855052|gb|EEM99635.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 194 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 5/95 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + I + + ++ L G+ + ++ + R S E + I A Sbjct: 2 QENIGKVIKEIRKAKGISAFVLGEMIGVSQQAISQYENG-----KRKISFEVLNNIAKAL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 N + LL + + L P + Sbjct: 57 NVPMDTLLFVNHEAIEQKIAERGVEALEKEPSLFN 91 >gi|328885857|emb|CCA59096.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces venezuelae ATCC 10712] Length = 509 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I + I + T + LA ++ N+ +R S E I +I A Sbjct: 8 RIGKLIRDARQHRGWTQTQLADALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60 >gi|310826136|ref|YP_003958493.1| hypothetical protein ELI_0514 [Eubacterium limosum KIST612] gi|308737870|gb|ADO35530.1| hypothetical protein ELI_0514 [Eubacterium limosum KIST612] Length = 220 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 22/173 (12%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T F+ K++ E I L+ L ++ ++ ++ + + G++ + R + + Sbjct: 5 TMFTPKQVGERIKERRIELKLSMPELGKRISVNKSTIQRYEADGVDPK-RTMIINGLAEA 63 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--------------------- 100 L T E + L + D +T +++ E + + S S Sbjct: 64 LLTTPEWLTGLSEEKEYDAKTLCQRDIEAHIAKYLDSVSVVQGEPHQQLLTTFLGKMIDL 123 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 + + V E YAI++ K M Sbjct: 124 YSVLCYHFADAMAEVDRVAADEGLKESLMRYAIESGAITEKVYRNEMEAPIED 176 >gi|302380010|ref|ZP_07268489.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302312236|gb|EFK94238.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] Length = 174 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + +++ L+ LA + + + +K +R P ++S+ K+ + + Sbjct: 4 ENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSV-----PDSDSLIKLSEILHTS 56 >gi|260439179|ref|ZP_05792995.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292808378|gb|EFF67583.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 140 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 30/127 (23%), Gaps = 6/127 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + + LT LA G+ + + + R E+ K+ + I Sbjct: 4 GERIRELRTQKGLTQPQLADSIGVSVRTVKSYELGTSLPKTR----ETYQKLAEFFDVNI 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL + G + E+ Sbjct: 60 NYLLAKDEQFILDAGATYGSRG--KHKQQAHALIAEVSGLFAGGGIAEEDMDEMMKAIQD 117 Query: 130 IYAIQTQ 136 Y I + Sbjct: 118 AYWIAKE 124 >gi|158340467|ref|YP_001521461.1| helix-turn-helix domain-containing protein [Acaryochloris marina MBIC11017] gi|158310708|gb|ABW32322.1| helix-turn-helix domain protein [Acaryochloris marina MBIC11017] Length = 81 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 M + LT +A G+ S + +R +++ KIL T Sbjct: 22 MRRKQGLTQDDIAEALGISGQSVSNWERGRSIPTLTIDQVKTLCKILDCT 71 >gi|55820955|ref|YP_139397.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55822875|ref|YP_141316.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] gi|55736940|gb|AAV60582.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55738860|gb|AAV62501.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] Length = 111 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 SHK I ++ E NLT LA + G S + + P+ +++ +I Sbjct: 46 KLSHK-----IKQLRENINLTQQELADRMGKSQASIGRIENGTTN-----PTYKTLEEIA 95 Query: 63 AATN 66 AATN Sbjct: 96 AATN 99 >gi|332141631|ref|YP_004427369.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|332143443|ref|YP_004429181.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551653|gb|AEA98371.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327553465|gb|AEB00184.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 106 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I E++ R + L+ ++G+ + +K + G++ R S ++ ++L Sbjct: 6 EQILESLREARVRKGFSQRELSARSGVPQSHISKIESGGVD--LRISSLIALARVLD 60 >gi|330718084|ref|ZP_08312684.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 67 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + + LA+ AG+ + N + + PS E FK+ + + Sbjct: 3 NNIKTLRKAQKFSQDELAQAAGVTRQTINAIENDKYD-----PSLELAFKLASILLVRVD 57 Query: 71 QLLDLP 76 +L Sbjct: 58 ELFLWH 63 >gi|222084519|ref|YP_002543048.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721967|gb|ACM25123.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 189 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 5/115 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ++ +T LA + + ++ +R P+ + ++ AA + Sbjct: 9 IGARIKQLRIARGMTLDELANASAVSRAMISRIERAEA-----SPTASLLARLCAALGLS 63 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + D + + + + V P Sbjct: 64 LSSFFAEEEEDVSPLARSDAQPIWRDPETGYVRRAVSPAGTQSPVDLVEVTFPAG 118 >gi|170696997|ref|ZP_02888093.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170138171|gb|EDT06403.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 95 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + +A+ L+ + +A + G + + +R GR PS +++ K AA Sbjct: 31 LLDAMLAARRAAGLSQADVAERMGTKAPAVTRLERALATGR-HSPSIDTLRKYAAACG 87 >gi|172062317|ref|YP_001809968.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994834|gb|ACB65752.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 95 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + +A+ L+ + +A + G + + +R GR PS +++ K AA Sbjct: 31 LLDAMLAARRAAGLSQADVAERMGTKAPAVTRLERALATGR-HSPSIDTLRKYAAACG 87 >gi|23465550|ref|NP_696153.1| hypothetical protein BL0981 [Bifidobacterium longum NCC2705] gi|239621901|ref|ZP_04664932.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326214|gb|AAN24789.1| hypothetical protein with helix turn helix motif [Bifidobacterium longum NCC2705] gi|239515092|gb|EEQ54959.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517097|emb|CBK70713.1| Predicted transcriptional regulators [Bifidobacterium longum subsp. longum F8] Length = 277 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 6/111 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES------IFKIL 62 I + I + E LT S A + + + ++ ++ E S + +++ Sbjct: 119 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMARLM 178 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + CQ +PF + + + + Sbjct: 179 EMPDNGFCQSCAMPFYRPEDHGTEPDGTRNGDYCNYCYEDGVFLQAYANSD 229 >gi|17229162|ref|NP_485710.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75907407|ref|YP_321703.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17135490|dbj|BAB78036.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75701132|gb|ABA20808.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 115 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + E+ LT L+R G+ ++ + GR E I + A N + Sbjct: 8 RIALLREKAGLTQLELSRLVGVTESTIQNWE----SGRTGTDHIERIIRFCKALNCQVED 63 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYF 95 L++ T+ K + ++ Sbjct: 64 LIEYKDETTETSVNKPTSLSDIHH 87 >gi|150018568|ref|YP_001310822.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905033|gb|ABR35866.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 359 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I ++ + LT LA G+ + +K + P + + A N Sbjct: 5 NIGETILKLRKERKLTQEELALMIGISAGAVSKWENGNS-----MPDISILAPLARALNT 59 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 +I LL K Sbjct: 60 SIDTLLSFHKELSEEEVNNIKS 81 >gi|332157761|ref|YP_004423040.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] gi|331033224|gb|AEC51036.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] Length = 66 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E + LT LA+K G+ + ++ + PS FKI I Sbjct: 3 NRLRELREMYGLTQEELAKKLGVTRQTIIAIEKGKYD-----PSLRLAFKIAKFFGVKIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DIFIYDD 64 >gi|307707790|ref|ZP_07644268.1| conserved domain protein [Streptococcus mitis NCTC 12261] gi|307616172|gb|EFN95367.1| conserved domain protein [Streptococcus mitis NCTC 12261] Length = 68 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R + LA+ AG+ + + +R PS KI NE Sbjct: 2 QLKNRLKELRARDGFNQTELAKLAGVSRQTISLLERDEYT-----PSIIIALKISQIFNE 56 Query: 68 T 68 T Sbjct: 57 T 57 >gi|284009381|emb|CBA76570.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 8/91 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K I E I + LT L ++ G+ + ++ ++ E P +++ Sbjct: 1 MEM---KSIGERIRLRRKELELTQKQLGKRVGVSHVAISQWEKEETE-----PKGDNLLS 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 + A T +L S+ + Sbjct: 53 LADALMCTAEYILRGTTSEKPIRCDNDTYKY 83 >gi|254294734|ref|YP_003060757.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043265|gb|ACT60060.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 70 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + LT LA G+ + ++ PS E+ F+I +++ + Sbjct: 11 IQELRKAKKLTQQELADAIGMTRQTIVAIEKGKY-----SPSLEAAFRIAQTLEQSLTDV 65 Query: 73 LDLPF 77 Sbjct: 66 FVWSE 70 >gi|227832086|ref|YP_002833793.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] gi|262184059|ref|ZP_06043480.1| putative transcriptional regulator, MerR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227453102|gb|ACP31855.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] Length = 468 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ + LA GL + N+ + R + + KI A Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLKITEAFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + + + P + V + Sbjct: 61 ATFFSRDDDSRLLAEIQDVVQDQEICPSPVELQELSELVYNHPTVARTLVDIHRRYRNIR 120 Query: 129 GIYAIQTQD 137 ++ T Sbjct: 121 DKLSLATDT 129 >gi|168211008|ref|ZP_02636633.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710935|gb|EDT23117.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 330 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 67/219 (30%), Gaps = 11/219 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++++ E++N + L FN+ KR N + K T + ++ Sbjct: 92 LNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDIKLFRELSKEFTNTLDKEHEI 151 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNG 129 + + F S + F + V + Sbjct: 152 NLSDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISK 211 Query: 130 IYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185 A+ + + + SM L++ +++I GD ++ + Sbjct: 212 SIALPSNYKDCFALRVKGNSMNKLFKNNELIICCRNKTPIDGDIVIAYLSENNEATC-KK 270 Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222 I ++ ++L + Y + + SDI I ++ S Sbjct: 271 IHKKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 308 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 2/82 (2%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I +++ L+ + LA K G+ T+ +R +E + K++ + +++ Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYT--LVQLSKLMNRSIDSLLG 69 Query: 72 LLDLPFSDGRTTEKKEKEIPLL 93 L + + + Sbjct: 70 LNHSTENTNDLNNSDLSKKIFI 91 >gi|12746568|gb|AAK07492.1| hypothetical protein [IncJ plasmid R391] gi|20095202|gb|AAM08068.1| hypothetical protein [Providencia rettgeri] gi|262318118|dbj|BAI48444.1| hypothetical protein [Proteus mirabilis] Length = 106 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I E++ R + L+ ++G+ + +K + ++ R S ++ ++L Sbjct: 6 EQILESLREARVRKGFSQRELSARSGVPQSHISKIESGSVD--LRISSLIALARVLD 60 >gi|27467714|ref|NP_764351.1| hypothetical protein SE0796 [Staphylococcus epidermidis ATCC 12228] gi|57866618|ref|YP_188269.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|251810551|ref|ZP_04825024.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|293366914|ref|ZP_06613589.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315258|gb|AAO04393.1|AE016746_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637276|gb|AAW54064.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|251805962|gb|EES58619.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|291318889|gb|EFE59260.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329732828|gb|EGG69174.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] gi|329734233|gb|EGG70549.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] gi|329735546|gb|EGG71834.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 179 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/197 (11%), Positives = 58/197 (29%), Gaps = 35/197 (17%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + NLT LA + L ++ + PS E+ ++ Sbjct: 2 DIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHA-----SPSMETFLNLIEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126 + P + +KKE+ I Y G+ + + N+++ + P Sbjct: 57 SASDFFKEPSDEKVLYKKKEQTIYDEY-----DKGYILNWLVANSNEFDMEPLILTLRPN 111 Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183 + ++ + + + G+++ + + K Sbjct: 112 ASYKNFKPSESDTFIYCLNGE-----------------VSLQLGNQVYKACKEDVLYFKA 154 Query: 184 ----VLISRRGRSIDLM 196 L + + + ++ Sbjct: 155 KDKHRLYNETDKEVKVL 171 >gi|329770320|ref|ZP_08261704.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] gi|328836744|gb|EGF86398.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] Length = 181 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 5/92 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + R+ + NLT L + L ++ +R PS E+ F IL Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLA-----SPSMETFFNILQVLGCA 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 D S + E + Sbjct: 59 PKDFFDKESSSQKVYYSLEDQTSYEETDDGYE 90 >gi|313904105|ref|ZP_07837485.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313471254|gb|EFR66576.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 123 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + AI NLT LA + G++ +K + R PS + ++ Sbjct: 57 DVIRAIVDARTSQNLTQKELAERTGINQADISKLENGT-----RNPSVNLLKRLAEGMGM 111 Query: 68 T 68 T Sbjct: 112 T 112 >gi|300717227|ref|YP_003742030.1| phage repressor protein CI [Erwinia billingiae Eb661] gi|299063063|emb|CAX60183.1| Phage repressor protein CI [Erwinia billingiae Eb661] Length = 185 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 26/175 (14%) Query: 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80 +T LA+ +G+ + + + EG I + L Sbjct: 3 GITQGALAKASGVSQPTIWRLTKGEAEGSR---KLVDIARALDV-----------NVQWL 48 Query: 81 RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP--EIRSPHNGIYAIQTQDT 138 E + + + G S P G V P Y + Sbjct: 49 ANGEGEMRGASAISAIDKVKSGTTISVWGPDGKTGEVVSAPNGAKAKKSWRAYILDRN-- 106 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 S G I+I+++ + GD ++ K + + + Sbjct: 107 ----SGCSEATA---GSIVIIDTEVPAESGDLVIAKVNSR-LSVYRYLEGPSNGF 153 >gi|255974995|ref|ZP_05425581.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256963766|ref|ZP_05567937.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257421770|ref|ZP_05598760.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|307271713|ref|ZP_07552984.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307285503|ref|ZP_07565642.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967867|gb|EET98489.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256954262|gb|EEU70894.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257163594|gb|EEU93554.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|306502727|gb|EFM71992.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306511591|gb|EFM80590.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|315155529|gb|EFT99545.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 180 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T Q + + +E+ G+ + P N+ V + Sbjct: 57 TPEQFFSQQPLEQKIVYNEEESTLYY----DEEHGYELKWLIPASNEKEMEPVIITFDKN 112 Query: 128 NGI 130 Sbjct: 113 GEY 115 >gi|213692944|ref|YP_002323530.1| transcriptional regulator, XRE family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524405|gb|ACJ53152.1| transcriptional regulator, XRE family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459123|dbj|BAJ69744.1| putative transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 164 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 18/42 (42%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 ++ E + + + +T LA + G+ + ++ + + Sbjct: 20 EDQLLEELVSLRAQRGMTQKQLADELGVSQSYVSQIENGRKK 61 >gi|182440719|ref|YP_001828438.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469235|dbj|BAG23755.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 205 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/146 (9%), Positives = 42/146 (28%), Gaps = 12/146 (8%) Query: 1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M + + + + I + + LA +A + ++ ++ + R + Sbjct: 1 MPM-TQEDGELDSLVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENG-----RRRLA 54 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + A + ++ QL++ D + + L +P G T Sbjct: 55 LDQLVTLARALDTSLDQLVETASDDVVSNPTVDGAHGQLRWPIKAEPGMTVIRQRVTEPP 114 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140 + + + Sbjct: 115 PDNPARLRAHPGREWLVVLSGTAILL 140 >gi|171778925|ref|ZP_02919987.1| hypothetical protein STRINF_00848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282571|gb|EDT47995.1| hypothetical protein STRINF_00848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 65 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + + ++ + LA G+ + ++ S E KI TI + Sbjct: 4 RIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNA-----SLELAHKIAEYFGMTIEE 58 Query: 72 LLDLPF 77 + Sbjct: 59 IFIFDE 64 >gi|119871924|ref|YP_929931.1| XRE family transcriptional regulator [Pyrobaculum islandicum DSM 4184] gi|119673332|gb|ABL87588.1| transcriptional regulator, XRE family [Pyrobaculum islandicum DSM 4184] Length = 516 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + R L+ S LAR AG+ ++ + + I PS +++ I A Sbjct: 4 KLGNRLSELRRRKGLSLSRLARLAGVSKSTLWEIENDKI-----SPSINTLWAIANALGV 58 Query: 68 TICQ 71 + Sbjct: 59 PFGE 62 >gi|332671809|ref|YP_004454817.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340847|gb|AEE47430.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484] Length = 221 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 5/91 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + LT + +A G+ ++ ++ + G R P+ E + + Sbjct: 34 EGVGSRLRALRQDRGLTLAQVADATGVSLSTLSRLESGG-----RRPTLELLLPLAREYQ 88 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + +L+D P + + E F P Sbjct: 89 VPLDELVDAPATGDPRVFARPFERHGRTFVP 119 >gi|315649281|ref|ZP_07902370.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275269|gb|EFU38638.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 122 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 5/79 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + E+ T LA G+ + + ++ R P E++ ++ + +I Sbjct: 6 RISELREQRGWTQEELATSVGITRAALSHYEKN-----RRKPDFETLTRLADLFDVSIDY 60 Query: 72 LLDLPFSDGRTTEKKEKEI 90 L+ + + + + Sbjct: 61 LIGRTAQEKAVLDPEVRSF 79 >gi|291518587|emb|CBK73808.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 251 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K I M + LT LA G+ + ++ + +G + K Sbjct: 1 MLDLT--KTGSFISEMRKEKGLTQKQLADLVGVSDKAVSRWE--TGKGLPDTSIMPELCK 56 Query: 61 ILA 63 L Sbjct: 57 ALD 59 >gi|257484178|ref|ZP_05638219.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298486948|ref|ZP_07005001.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158510|gb|EFH99577.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324095|gb|EFW80177.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|320327822|gb|EFW83829.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|320328658|gb|EFW84658.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330885478|gb|EGH19627.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330891025|gb|EGH23686.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330985445|gb|EGH83548.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008257|gb|EGH88314.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 182 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + L+ LAR++G+ + + ++ + PS S+ K+L T+ Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58 Query: 70 CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 G+ + + + PS F P ++ Sbjct: 59 ADFFTFDQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAP---GADS 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P + S + + GD Sbjct: 116 GEEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PGDGYYFPTTL 159 Query: 178 GDIVAKVLISRRGRSIDLMSLN 199 + +++S N Sbjct: 160 PH----RFRNIGQDEAEIISSN 177 >gi|154482431|ref|ZP_02024879.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] gi|149736708|gb|EDM52594.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] Length = 293 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I ++ L+ +A K G+ + K + P ++ I ++ Sbjct: 5 EQIKHYRKQAGLSQEKMAEKIGVSRQAITKWENGTGT-----PDIANLMAIADLFQISVD 59 Query: 71 Q 71 + Sbjct: 60 E 60 >gi|329667149|gb|AEB93097.1| transcriptional regulator, XRE family [Lactobacillus johnsonii DPC 6026] Length = 114 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + L+ + LA + G+ ++ + R PS +++ I ++T Sbjct: 4 LGENISNLRKSRGLSQAQLADRLGIATSTLGMYE-----TNKREPSNQTLLLIADFFDKT 58 Query: 69 ICQ 71 + + Sbjct: 59 VDE 61 >gi|328953825|ref|YP_004371159.1| transcriptional regulator, XRE family [Desulfobacca acetoxidans DSM 11109] gi|328454149|gb|AEB09978.1| transcriptional regulator, XRE family [Desulfobacca acetoxidans DSM 11109] Length = 415 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 2/103 (1%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 E ++ LA++AGLD + N+ + R R + + L T + + L Sbjct: 17 REAAGISQRALAQQAGLDVSYINRLESGER--RPRRGTLLKLASALRITGQELEAWLMAG 74 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + +G + T + W + Sbjct: 75 DLAPTPLLASLRNQLGRTAVAAGPDVSGQTPEAETLSLWERLE 117 >gi|331698894|ref|YP_004335133.1| peptidase S24/S26A/S26B, conserved region [Pseudonocardia dioxanivorans CB1190] gi|326953583|gb|AEA27280.1| Peptidase S24/S26A/S26B, conserved region [Pseudonocardia dioxanivorans CB1190] Length = 109 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 7/87 (8%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMS 197 + SM P GD++I+ V GD +L++ R G + K G + Sbjct: 11 VAVRGPSMSPALTDGDVVIVRFGAPVRAGDVVLVRWASRPGQLSVKRARRPEGEGWWVEG 70 Query: 198 LNC--CYPVDTVEMSDI--EWIARILW 220 N T+ +++ +AR +W Sbjct: 71 DNPFGSTDSRTLGPAEVDAVVVAR-MW 96 >gi|291543534|emb|CBL16643.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 201 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ +T LA + T+ +K + +PS +S+ I ++ Sbjct: 5 EKLQELRKQRGMTQEELATALYVSRTAVSKWESGRG-----YPSIDSLKAISGFFGVSLD 59 Query: 71 Q 71 Q Sbjct: 60 Q 60 >gi|302546828|ref|ZP_07299170.1| putative helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302464446|gb|EFL27539.1| putative helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 102 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 5/82 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R ++ LAR+ G+ + + P +++ + A + Sbjct: 25 GAFLKRARRSRGMSQRALARELGVSQARIAQIENGAST-----PQIDTMAAYITALGGEL 79 Query: 70 CQLLDLPFSDGRTTEKKEKEIP 91 D +TT ++ Sbjct: 80 TLRADFHDHVTQTTWPEQHPTE 101 >gi|305681668|ref|ZP_07404474.1| bacteriophage CI repressor protein [Corynebacterium matruchotii ATCC 14266] gi|305658828|gb|EFM48329.1| bacteriophage CI repressor protein [Corynebacterium matruchotii ATCC 14266] Length = 95 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I R L LA AG+ S + + P ++ I AT Sbjct: 14 ELQDRIQRARRHAGLEQGQLAELAGVSRKSVSNWEIGKTV-----PRRSALIAIAFATGV 68 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 + L K K Sbjct: 69 NLYWLETGESPYPPEPVKDAKS 90 >gi|227505364|ref|ZP_03935413.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198066|gb|EEI78114.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length = 116 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATNETI 69 + ER ++ LA +G+ + + +R R P ++FK+ A Sbjct: 17 SRLRETRERRGMSQKALAEISGVSRSQISNLERTDKALNLRADPQLSTLFKLAYALEVPP 76 >gi|212709705|ref|ZP_03317833.1| hypothetical protein PROVALCAL_00753 [Providencia alcalifaciens DSM 30120] gi|212687516|gb|EEB47044.1| hypothetical protein PROVALCAL_00753 [Providencia alcalifaciens DSM 30120] Length = 220 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 26/177 (14%) Query: 11 EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + +T LA +G+ + + +G + + I A + Sbjct: 30 ERLQEAMKYRGNMTQGALAEASGVAQPTIWRLVNGKAKGSVK------LVDIANALGVNV 83 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHN 128 L + +++ S +G + V P + P Sbjct: 84 DWLANGIGEMEGPNSEQKFR---------LDKSLNISVWDESGETDDFVISPMGKPLPSY 134 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 Y + + P G I I+++ I GD ++ + V K L Sbjct: 135 RAYVLSRNT------GCAEAP---NGSIAIVDTEITPGTGDLVIAQVNNSISVYKFL 182 >gi|152987569|ref|YP_001349079.1| DNA-binding protein [Pseudomonas aeruginosa PA7] gi|150962727|gb|ABR84752.1| DNA-binding protein [Pseudomonas aeruginosa PA7] Length = 258 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I R ER L+ S LA++AG+ ++ ++ + PS E+++ + Sbjct: 84 LAASIKRERERLGLSISELAKRAGIAKSTLSQLEAGVGN-----PSLETLWALA 132 >gi|331697390|ref|YP_004333629.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326952079|gb|AEA25776.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 190 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +A+ R R +L+ LAR+AGL ++ ++ + PS E+++ + A Sbjct: 16 IADAVRRERTRRDLSLGELARRAGLSKSTLSQLESGAGN-----PSVETLWALAVALGVP 70 Query: 69 I 69 Sbjct: 71 F 71 >gi|326442440|ref|ZP_08217174.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 196 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L + + ++ Sbjct: 56 VAKALRISAETLYVRAGILDERDRDELETRAVI 88 >gi|325000344|ref|ZP_08121456.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 196 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + +T + L+ G+ ++ ++ + G R P+ E + + A Sbjct: 12 VGPRLAGLRSERGMTLADLSEATGISVSTLSRLESGG-----RRPTLELLLPLATAHQVP 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ P + + + P P++ + Sbjct: 67 LDELVAAPPVGDPRVRLRPRRVHGSTVVPLTERPGGLQAFKMIVPWRGDEPAPQVHEGYE 126 Query: 129 GIYAIQTQDTRH 140 +Y + + Sbjct: 127 WLYVLDGRLRLV 138 >gi|291544357|emb|CBL17466.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 112 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I R E +T L+ L +R R PS E++ KI + Sbjct: 10 IGDRIRRYRELSRMTQEQLSELCSLSTGYIGHLERGT-----RSPSLETLAKIAQLLRVS 64 Query: 69 ICQLLDLPFSDGRTT 83 + L+ Sbjct: 65 LDDLVFGEAEIHNNM 79 >gi|241889565|ref|ZP_04776863.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863187|gb|EER67571.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 181 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 5/91 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + R+ + NLT L + L ++ +R PS E+ F IL Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLA-----SPSMETFFNILQVLGCA 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 D + + E + Sbjct: 59 PKDFFDKESTSQKVYYSLEDQTSYEETDEGY 89 >gi|239932677|ref|ZP_04689630.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 181 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 5/136 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R+ + +T + L+ G+ ++ ++ + R PS E + I A + Sbjct: 2 GPRLRRIRKEREVTLAALSEATGISVSTLSRLESG-----LRRPSLELLLPIAQAHQVPL 56 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +L+ P K E P + P + Sbjct: 57 DELVGAPPVGDPRVRSKPIERYGRTHWPLTRQPGGLQAYKVLEPRRKLEPEPRTHEGYEW 116 Query: 130 IYAIQTQDTRHKTQDT 145 +Y + + ++ Sbjct: 117 LYVLSGRLRLVLGEND 132 >gi|196230222|ref|ZP_03129085.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196225819|gb|EDY20326.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 207 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + L+ LA ++G+ + + +R P+ + K+ + Sbjct: 17 NQRIAGRVRELRAAQGLSLDTLANRSGVSRSMISLIERGES-----SPTAVVLEKLASGL 71 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 T+ L D + + G+ + P G Sbjct: 72 GATLPSLFDGLSAKASGPTSPVSRREDQPEWRDPASGYIRRNISPVG 118 >gi|307151755|ref|YP_003887139.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981983|gb|ADN13864.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 78 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 5/72 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+ + + + L+ LA LD + +R R S +I KI A Sbjct: 10 RKQFGNRLRYLRQTRGLSQEALADLCNLDRSYIGGVERGE-----RNISLLNIKKIADAL 64 Query: 66 NETICQLLDLPF 77 + + D Sbjct: 65 GISPKEFFDEQD 76 >gi|134298741|ref|YP_001112237.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051441|gb|ABO49412.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 77 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + ++ I + E+ L+ LA G+ + K + G S ++ KI Sbjct: 1 MVTLIQLGHKIKNLREKKGLSQVQLAHMVGVTNSLICKIETGQTSG-----SIHTLKKIA 55 Query: 63 AATNET 68 + + Sbjct: 56 NKLDVS 61 >gi|53716572|ref|YP_105616.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53722368|ref|YP_111353.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642241|ref|ZP_00441000.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|76818883|ref|YP_335523.1| transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121597603|ref|YP_990060.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381912|ref|YP_001024022.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126445750|ref|YP_001078595.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|126456449|ref|YP_001075854.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|166999565|ref|ZP_02265402.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167742899|ref|ZP_02415673.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 14] gi|167828452|ref|ZP_02459923.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 9] gi|167849906|ref|ZP_02475414.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] gi|167898508|ref|ZP_02485909.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 7894] gi|167906857|ref|ZP_02494062.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei NCTC 13177] gi|167915218|ref|ZP_02502309.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] gi|167923046|ref|ZP_02510137.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] gi|217418478|ref|ZP_03449985.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226198499|ref|ZP_03794066.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|242312902|ref|ZP_04811919.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254173994|ref|ZP_04880657.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254183723|ref|ZP_04890315.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254191201|ref|ZP_04897706.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254193556|ref|ZP_04899990.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254200408|ref|ZP_04906773.1| DNA-binding protein [Burkholderia mallei FMH] gi|254204434|ref|ZP_04910787.1| DNA-binding protein [Burkholderia mallei JHU] gi|254265606|ref|ZP_04956471.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|254356660|ref|ZP_04972935.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52212782|emb|CAH38814.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422542|gb|AAU46112.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|76583356|gb|ABA52830.1| possible transcriptional regulator, XRE family, CUPIN domain [Burkholderia pseudomallei 1710b] gi|121225401|gb|ABM48932.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124289932|gb|ABM99201.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126230217|gb|ABN93630.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|126238604|gb|ABO01716.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147748020|gb|EDK55095.1| DNA-binding protein [Burkholderia mallei FMH] gi|147754020|gb|EDK61084.1| DNA-binding protein [Burkholderia mallei JHU] gi|148025687|gb|EDK83810.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157938874|gb|EDO94544.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160695041|gb|EDP85011.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169650309|gb|EDS83002.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184214256|gb|EDU11299.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217397782|gb|EEC37797.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225929422|gb|EEH25442.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|238523345|gb|EEP86784.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242136141|gb|EES22544.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|243064397|gb|EES46583.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254216608|gb|EET05993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 94 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + AI ++ E + LA AGL+ + + +R S ++ K Sbjct: 1 MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTE 84 + A I +LL G Sbjct: 55 LARAFGVPIARLLSPAGDAGPPPH 78 >gi|330989818|gb|EGH87921.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 134 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 8/103 (7%) Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168 P Y + SM + D++ ++ +++ Sbjct: 33 PAAAHIEQDFSSGRLMDVRAPY-----IYVAQIDSDSMRGIGIFDADLIAVDRSLKAGHK 87 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ G+ + K L + + L S N Y + + Sbjct: 88 SIVIAAVN-GEPMCKRLCIKGDD-VSLQSENPSYAAKYILKGE 128 >gi|304409138|ref|ZP_07390759.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica OS183] gi|307303141|ref|ZP_07582896.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica BA175] gi|304352959|gb|EFM17356.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica OS183] gi|306913501|gb|EFN43923.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica BA175] Length = 135 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 12/120 (10%) Query: 108 VFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160 P S + + + SM + GD+LI++ Sbjct: 5 PIHASAGITGFESPAAEYGQLGLSLDELLVVHPSATFIGIAKGDSMQGVGIFYGDLLIVD 64 Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 GD ++ G+ V K+L L+S N + + + + ++ Sbjct: 65 RQETARHGDVIVANFN-GEFVCKILDKT---HRMLLSSNEQHQPQPIHDYDNFTIEGVVI 120 >gi|228915212|ref|ZP_04078807.1| transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844443|gb|EEM89499.1| transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 117 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH++ + + E+ +T LA G+ S + P T ++ KI Sbjct: 1 MFSHER----LKSLIEKKGITQQQLADVIGVSHVSVYNYVEG-----KKAPGTRTLQKIA 51 Query: 63 AAT 65 Sbjct: 52 NYL 54 >gi|228950422|ref|ZP_04112582.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809237|gb|EEM55698.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 117 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH++ + + E+ +T LA G+ S + P T ++ KI Sbjct: 1 MFSHER----LKSLIEKKGITQQQLADVIGVSHVSVYNYVEG-----KKAPGTRTLQKIA 51 Query: 63 AAT 65 Sbjct: 52 NYL 54 >gi|157693790|ref|YP_001488252.1| hypothetical protein BPUM_3038 [Bacillus pumilus SAFR-032] gi|157682548|gb|ABV63692.1| hypothetical protein BPUM_3038 [Bacillus pumilus SAFR-032] Length = 132 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 1/124 (0%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E L+ + LA + + ++ + G + P+ + + L E + Sbjct: 4 GAYLRALREEKKLSVNQLAMYSEVSAAGISRIENGKR-GIPKPPTIKKLASALKVPYEDM 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 Q + KE+E+ L + + G+ W+T+ EI + Sbjct: 63 MQAAGYIEEASSVHQLKEEEMALSKIKEAAAQYELGDLELFDGDIWSTLSKKEIEDLNRY 122 Query: 130 IYAI 133 + I Sbjct: 123 LLFI 126 >gi|147677060|ref|YP_001211275.1| hypothetical protein PTH_0725 [Pelotomaculum thermopropionicum SI] gi|146273157|dbj|BAF58906.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 355 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + L+ LA + G+ P + +K +R PS+ + ++ A Sbjct: 2 VGERLRLARRAAGLSLRELANRVGVSPQAISKYERGLDI-----PSSGVLLRLAEALGVN 56 Query: 69 ICQLLDLPF 77 + Sbjct: 57 VEYFFRTRR 65 >gi|86137152|ref|ZP_01055730.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85826476|gb|EAQ46673.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 187 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 38/144 (26%), Gaps = 11/144 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + ++ L+ S A G+ + +R P+ +++KI Sbjct: 1 MTEDIIGANLRKIRNAAGLSLSKAADLTGVSKAMLGQIERGES-----SPTIATLWKIAK 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG------VFPTGNKWNT 117 + + L+ P +D + + FD Sbjct: 56 GFHLPLTALIGAPDADQPDPAVAFETVQFPGSIAVKIIFPFDPALGGETFRISLTPGQTH 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHK 141 V P ++ + + Sbjct: 116 VSQPHESGVVEEVFVLSGDMEVLR 139 >gi|326692876|ref|ZP_08229881.1| Rep protein [Leuconostoc argentinum KCTC 3773] Length = 118 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + ++A+ L+ S L K G+ TS K P E+I K + Sbjct: 2 ETILDRTKKLAKEKGLSLSELEEKIGIAKTSIYSWKSNI-------PKGETIQKTADVLD 54 Query: 67 ETICQLLDLPFSDGR 81 + LL Sbjct: 55 TSTDYLLGRTDDPTP 69 >gi|326804313|ref|YP_004322131.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651167|gb|AEA01350.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 328 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + ++ + LA++ + S +K +R P E I + Sbjct: 3 LADKILHLRKQAGWSQEELAQQLNVSRQSISKWERAEAI-----PDLEKILDLARIFG 55 >gi|326388406|ref|ZP_08210002.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207138|gb|EGD57959.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 485 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 5/124 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I R+ LT +A G+ P+ +R R + + + ++ + Sbjct: 29 LGPRIKRLRRELGLTQQAMAEDLGISPSYVALIERNQ-----RPLTADLLLRLARSYKLD 83 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L D + P+ S D G + + Sbjct: 84 MSELAADERDDYARRLSGMLKDPIFAEIDLTSLEISDIATSFPGVAEAMLRLHGAYIREQ 143 Query: 129 GIYA 132 A Sbjct: 144 QALA 147 >gi|299537453|ref|ZP_07050747.1| Signal peptidase I T [Lysinibacillus fusiformis ZC1] gi|298727014|gb|EFI67595.1| Signal peptidase I T [Lysinibacillus fusiformis ZC1] Length = 186 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 K Q SM P Y DI+I++ ++ + P ++ K +I G +++ Sbjct: 38 IKVQGASMYPTYHDKDIIIVSKTSKIERFDQIVFQSPVEDELYIKRVIGLPGDKVEMK 95 >gi|262283318|ref|ZP_06061084.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260809|gb|EEY79509.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 120 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + NLT + +A+ + S+ + + R PS+E++ K N + Sbjct: 4 ERLKALRLEANLTQNDIAKSLNISQPSYAQWENG-----RRKPSSETLEKFAQFYNVSTD 58 Query: 71 QLLDLPFSDGRTTEK 85 LL Sbjct: 59 YLLGKSDYKNSDEID 73 >gi|221640096|ref|YP_002526358.1| XRE family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221160877|gb|ACM01857.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides KD131] Length = 211 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S+ I + + ++ + L+ SGL+ ++G+ + ++ +R PS +I +I Sbjct: 1 MNSNHLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGR-----PSLRTIERIS 55 Query: 63 AATNETICQLLDLPFSDGRTT 83 A LL++P Sbjct: 56 QALGVPPFWLLEMPDQHNPEH 76 >gi|169335255|ref|ZP_02862448.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] gi|169257993|gb|EDS71959.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] Length = 143 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I + + + LT L K G+ + + ++ R S E K+ N Sbjct: 18 NTIGDRIKELRKENKLTQQELGEKLGVHSNTISMYEKGN-----RKVSAEMANKLSEIFN 72 Query: 67 ET 68 + Sbjct: 73 VS 74 >gi|150398411|ref|YP_001328878.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029926|gb|ABR62043.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 125 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EA+ + R +T +A G+ P + + G+ PS + + + Sbjct: 1 MTPF-----GEAVRELRRRKGVTQKEMAAAIGVSPAYLSALE----HGKRGAPSFDFLQR 51 Query: 61 ILAATNETICQ 71 + N + Sbjct: 52 VAGYFNVIWDE 62 >gi|134096914|ref|YP_001102575.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909537|emb|CAL99649.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 285 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 5/125 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 AI + ER ++ L+++ GL + + + R P+ E + +L A T Sbjct: 17 AAIRSIRERSGVSGRELSKRLGLSHGTVSHWETG-----RRVPTPEDVASLLTAAGITGD 71 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + +E + + P +G + +W +G+P + + Sbjct: 72 EKQRVVELARHASEPNWLTVGMPGIPQQLAGAVECERAASSIAEWAPMGLPGLLQTADYA 131 Query: 131 YAIQT 135 I Sbjct: 132 RTISK 136 >gi|66395850|ref|YP_240187.1| ORF047 [Staphylococcus phage EW] gi|62636272|gb|AAX91383.1| ORF047 [Staphylococcus phage EW] Length = 109 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 2/94 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + E ++++ + N+T L+ G+ ++ + + R + + Sbjct: 7 RKILSENLEQLMKERNITQVELSEAIGVSQSTVSNWLK--ESKYPRISKIQELANYFNVP 64 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 I + +L KE Sbjct: 65 KSRITEENNLHQETIAAHFDKENLTEEEMDEVMQ 98 >gi|29377137|ref|NP_816291.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227519665|ref|ZP_03949714.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227554145|ref|ZP_03984192.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229549226|ref|ZP_04437951.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255971941|ref|ZP_05422527.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256616839|ref|ZP_05473685.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256763285|ref|ZP_05503865.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256853958|ref|ZP_05559323.1| transcriptional regulator [Enterococcus faecalis T8] gi|256957887|ref|ZP_05562058.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256961092|ref|ZP_05565263.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|257079824|ref|ZP_05574185.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|257081830|ref|ZP_05576191.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|257084372|ref|ZP_05578733.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257087629|ref|ZP_05581990.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|257090791|ref|ZP_05585152.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257416836|ref|ZP_05593830.1| helix-turn-helix domain-containing protein [Enterococcus faecalis AR01/DG] gi|257420051|ref|ZP_05597045.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|293384038|ref|ZP_06629932.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386851|ref|ZP_06631421.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294779476|ref|ZP_06744872.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300861098|ref|ZP_07107185.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|307270635|ref|ZP_07551926.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307276897|ref|ZP_07558007.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290339|ref|ZP_07570254.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312900023|ref|ZP_07759340.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312902423|ref|ZP_07761629.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312908012|ref|ZP_07766995.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312953680|ref|ZP_07772517.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978460|ref|ZP_07790198.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29344603|gb|AAO82361.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227072889|gb|EEI10852.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227176771|gb|EEI57743.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229305463|gb|EEN71459.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255962959|gb|EET95435.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256596366|gb|EEU15542.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256684536|gb|EEU24231.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256710901|gb|EEU25944.1| transcriptional regulator [Enterococcus faecalis T8] gi|256948383|gb|EEU65015.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256951588|gb|EEU68220.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|256987854|gb|EEU75156.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|256989860|gb|EEU77162.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256992402|gb|EEU79704.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256995659|gb|EEU82961.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|256999603|gb|EEU86123.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257158664|gb|EEU88624.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ARO1/DG] gi|257161879|gb|EEU91839.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|291078518|gb|EFE15882.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083685|gb|EFE20648.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294453433|gb|EFG21839.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|295113617|emb|CBL32254.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300850137|gb|EFK77887.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|306498532|gb|EFM68034.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506320|gb|EFM75480.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306512945|gb|EFM81586.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310626103|gb|EFQ09386.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310628518|gb|EFQ11801.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310634093|gb|EFQ17376.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288609|gb|EFQ67165.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311292780|gb|EFQ71336.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315025573|gb|EFT37505.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030296|gb|EFT42228.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315032780|gb|EFT44712.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035163|gb|EFT47095.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315143822|gb|EFT87838.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315148623|gb|EFT92639.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315149967|gb|EFT93983.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315151947|gb|EFT95963.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159172|gb|EFU03189.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315162150|gb|EFU06167.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168640|gb|EFU12657.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315170416|gb|EFU14433.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|315173738|gb|EFU17755.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315576252|gb|EFU88443.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579167|gb|EFU91358.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315582897|gb|EFU95088.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|323481583|gb|ADX81022.1| helix-turn-helix/ cupin_2 family protein [Enterococcus faecalis 62] gi|327535878|gb|AEA94712.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 180 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T Q + + +E+ G+ + P N+ V + Sbjct: 57 TPEQFFSQQPLEQKIVYNEEESTLYY----DEEHGYELKWLIPASNEKEMEPVIITFDKN 112 Query: 128 NGI 130 Sbjct: 113 GEY 115 >gi|313634226|gb|EFS00863.1| DNA-binding protein [Listeria seeligeri FSL N1-067] Length = 104 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|253987942|ref|YP_003039298.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779392|emb|CAQ82553.1| similar to transcription regulator and to restriction enzyme contro elements [Photorhabdus asymbiotica] Length = 78 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + + ++ A K G+D T + +R R P+ E I I + + Sbjct: 12 GQRVRHLRQSSGMSQEAFADKCGIDRTYISGIERGI-----RNPTLEVINIIASGLQIEL 66 Query: 70 CQLLDL 75 L D Sbjct: 67 TDLFDF 72 >gi|297587137|ref|ZP_06945782.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297575118|gb|EFH93837.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 134 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ E LT + LA K G+ + + + G R + + KI N Sbjct: 4 GAKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQ----DMYKKIAEFFN 56 >gi|169335178|ref|ZP_02862371.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis DSM 17244] gi|169257916|gb|EDS71882.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis DSM 17244] Length = 172 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I ++ + L+ L G+ + + + I R + P ESI L Sbjct: 5 EIGNRIKQVRQEKGLSLRELGEIIGISGATIQRYENGLIN-RLKLPVIESIANALGVNPS 63 Query: 68 T 68 Sbjct: 64 W 64 >gi|161528460|ref|YP_001582286.1| XRE family transcriptional regulator [Nitrosopumilus maritimus SCM1] gi|160339761|gb|ABX12848.1| transcriptional regulator, XRE family [Nitrosopumilus maritimus SCM1] Length = 185 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 E+I +M ++ +T LA G+ + N+ + + PS E+ KI Sbjct: 6 ESIKQMRQKLGITQKKLASMTGVSTSMINQIESGRSQ-----PSYETAKKIFENL 55 >gi|323483984|ref|ZP_08089357.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] gi|323402700|gb|EGA95025.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] Length = 183 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 53/174 (30%), Gaps = 9/174 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ E + L+ L+R +G+ + + +R P+ +++KI Sbjct: 8 VAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGN-----PTISTLWKISNGMKVP 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L P + + + E + L + F + + + E + Sbjct: 63 FDALTVRPENLYQIVKTSEIQPLLEDNGKVRNYPVFPDDENRRFAVY-YLELEEGSFWES 121 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIV 181 + + + + Y I+ + D + GD Sbjct: 122 EPHLKGAAEFITVFKGQVEI--YADSQPFIVGQGESIRFRADTVHSYKNAGDGT 173 >gi|270262620|ref|ZP_06190891.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043304|gb|EFA16397.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 462 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + + S LA +AG+ +K +R P+ + ++ A Sbjct: 282 NQRIGARIRIEREARHWSLSDLAERAGVSRAMVHKIERGDS-----SPTAMLLARLSGAF 336 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ +L+ + ++E + + Sbjct: 337 GLSMSKLIARAETQEGRLLRREDQPVWV 364 >gi|254773353|ref|ZP_05214869.1| hypothetical protein MaviaA2_01546 [Mycobacterium avium subsp. avium ATCC 25291] Length = 477 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + R+ E LT LAR GL + N+ + Sbjct: 10 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRP 47 >gi|171778203|ref|ZP_02919432.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283027|gb|EDT48451.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 184 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 33/96 (34%), Gaps = 5/96 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + N++ +A K + + +K +R +P S+ + + Sbjct: 2 ELERRLAELRKEKNVSQEEIAEKLYVSRQTISKWERGKT-----YPDINSLLLMANYFDV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 ++ L+ + + + L F F Sbjct: 57 SLDHLIKGDVDTMKHQVDQSQFKRWLIFGGISWFIF 92 >gi|332559101|ref|ZP_08413423.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332276813|gb|EGJ22128.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 211 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S+ I + + ++ + L+ SGL+ ++G+ + ++ +R PS +I +I Sbjct: 1 MNSNHLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGR-----PSLRTIERIS 55 Query: 63 AATNETICQLLDLPFSDGRTT 83 A LL++P Sbjct: 56 QALGVPPFWLLEMPDQHNPEH 76 >gi|310640682|ref|YP_003945440.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245632|gb|ADO55199.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 122 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 5/81 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + E L LA+ G+ + + ++ R P E++ K+ TI Sbjct: 4 GTRIAELREHKGLKQEELAQSLGITRAALSHYEKN-----RRKPDFETLTKLADIFEVTI 58 Query: 70 CQLLDLPFSDGRTTEKKEKEI 90 L+ + +E Sbjct: 59 DYLVGRTSHPTAILDSDVREF 79 >gi|309799302|ref|ZP_07693549.1| conserved domain protein [Streptococcus infantis SK1302] gi|308117080|gb|EFO54509.1| conserved domain protein [Streptococcus infantis SK1302] Length = 67 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R L + LA+ AG+ + + +R PS KI N Sbjct: 2 LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIVIALKIAQIFN 54 >gi|304407873|ref|ZP_07389524.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304343356|gb|EFM09199.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 95 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 6/75 (8%) Query: 3 SFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + I I R+ + +T LA G+D S ++ + P E+I K+ Sbjct: 1 MSTQEAAIGNRISRIRKHRGITQQQLADALGIDRASLSQIETCRY-----SPRAETIRKL 55 Query: 62 LAATNETICQLLDLP 76 I + P Sbjct: 56 SDFFQLPIGDIFFNP 70 >gi|227823807|ref|YP_002827780.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] gi|227342809|gb|ACP27027.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] Length = 220 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + HNL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 42 DIGNRLRHVRLMHNLSQRELAKRAGVTNSTISLIESNASN-----PSVGALKRILDGIPI 96 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 97 GLAEFFSFEPERPRKAF 113 >gi|194015377|ref|ZP_03053993.1| YvaO [Bacillus pumilus ATCC 7061] gi|194012781|gb|EDW22347.1| YvaO [Bacillus pumilus ATCC 7061] Length = 133 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 1/124 (0%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E L+ + LA + + ++ + G + P+ + + L E + Sbjct: 4 GAYLRALREEKKLSVNQLAMYSEVSAAGISRIENGKR-GIPKPPTIKKLAGALKVPYEEM 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 Q + KE+E L + + G+ W+T+ EI + Sbjct: 63 MQAAGYIEEASSVHQLKEEETALSKIKEAAAQYELGDLELFDGDIWSTLSKKEIEDLNRY 122 Query: 130 IYAI 133 + I Sbjct: 123 LLFI 126 >gi|317484077|ref|ZP_07943008.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924665|gb|EFV45820.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 97 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI L+ GLA + + P+ + + R+PS E + +I A N Sbjct: 26 GTAIRHFRHEAGLSQDGLADRMDVSPSYISMLESG-----KRYPSIEMLIRIALALN 77 >gi|257877826|ref|ZP_05657479.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811992|gb|EEV40812.1| predicted protein [Enterococcus casseliflavus EC20] Length = 209 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + +T LA+ + P + +K +R P +++ + N Sbjct: 3 DLGKNIKELRQSKKMTQKSLAKMLNVTPQAVSKWERNESN-----PDIQTLISLSNYFNV 57 Query: 68 TICQL 72 ++ ++ Sbjct: 58 SVDEM 62 >gi|257469363|ref|ZP_05633457.1| hypothetical protein FulcA4_08479 [Fusobacterium ulcerans ATCC 49185] gi|317063609|ref|ZP_07928094.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689285|gb|EFS26120.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 168 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 20/39 (51%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 K++ I ++ +++ ++ LA+ G+ S +K + Sbjct: 2 KLFVKIQQLRKQNGMSQEKLAQLLGVSRQSVSKWESGQS 40 >gi|167754979|ref|ZP_02427106.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402] gi|167705029|gb|EDS19608.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402] Length = 73 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 9/78 (11%) Query: 3 SFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 KI I + + N++ LA + GL + +R R S +SI Sbjct: 1 MIKMDKIEVKFGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGT-----RNVSLKSI 55 Query: 59 FKILAATNETICQLLDLP 76 KI + +L D Sbjct: 56 EKIANGFAVNLKELFDFK 73 >gi|153834790|ref|ZP_01987457.1| helix-turn-helix domain protein [Vibrio harveyi HY01] gi|148868768|gb|EDL67839.1| helix-turn-helix domain protein [Vibrio harveyi HY01] Length = 306 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 13/130 (10%) Query: 10 WEAIDRMAERHNLTPSGLARK--------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 E + R+ E LT LA K A +DP + ++ +R P+T K+ Sbjct: 3 GEYLKRLREEVGLTQKELATKLNLASVDFASIDPVTISRWERGTT-----APTTVKAIKV 57 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L + L + E P + + + + Sbjct: 58 LRVLTTDLMPFLSSLPVESGKNIFDEIVEYRFKSPWAKLMSDSYEAPTQCKDVLDAPLLE 117 Query: 122 EIRSPHNGIY 131 + + Sbjct: 118 SSQDDYLNSL 127 >gi|134103762|ref|YP_001109423.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916385|emb|CAM06498.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 194 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 43/140 (30%), Gaps = 9/140 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R T + L+ G+ ++ ++ + R P E + + A Sbjct: 12 VGPRLRALRRRSGATLTALSETTGIPVSTLSRLESGH-----RKPGLELLLPLANAYQVP 66 Query: 69 ICQLLDLPFSDGRTTEKKE---KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +L+ P S + + ++ G + P G + P Sbjct: 67 LDELVGAPASGDPRVHPRPITRNGMTVIPLTRKPGGLQAFKQILPAGPT-DVEPDPRSHE 125 Query: 126 PHNGIYAIQTQDTRHKTQDT 145 ++ +Y + + Sbjct: 126 GYHWLYVLNGRLRLVLGDQD 145 >gi|167032895|ref|YP_001668126.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859383|gb|ABY97790.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 104 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + A+ R + LT + LA + G DP + ++ + PS +++ + Sbjct: 1 MTRSALGFALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYT-----PSIDALMEFAQ 55 Query: 64 ATNETICQLLDLPF 77 P Sbjct: 56 VLGVKPKDFFAEPD 69 >gi|70729712|ref|YP_259451.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344011|gb|AAY91617.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 182 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 57/191 (29%), Gaps = 18/191 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + L+ LAR++G+ + + ++ + PS S+ K+L ++ Sbjct: 4 GTRLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSVSSLKKLLEGIPMSL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + + G + G + +R + Sbjct: 59 ADFFTFD-------QPPREHQYVFRANEQPDLGRDGLRLLMIGAPVANRQMRFLREQY-A 110 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLISR 188 A ++ + + R L ++ + V N GD + Sbjct: 111 PGASSGEEAIVHAEGEECGLVTRGTVELTVDGQVSVLNPGDGYYFPTTLPHS----FRNI 166 Query: 189 RGRSIDLMSLN 199 +++S N Sbjct: 167 GQDEAEIISAN 177 >gi|56696154|ref|YP_166510.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677891|gb|AAV94557.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 130 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + E +T + LAR+ G+ + N + E R S Sbjct: 16 GDRLAAAREASGMTQAQLARRLGVKKATINGWEDDLSEPRANRLSM 61 >gi|325695326|gb|EGD37226.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332365308|gb|EGJ43071.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 168 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 5/145 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E + ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL + ++ Y+ S GF+ + P Sbjct: 57 TTDYLLLEDSNKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152 + ++ + Sbjct: 117 KFTALVWLTFFLLIASTMAINKALK 141 >gi|311071151|ref|YP_003976074.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] gi|310871668|gb|ADP35143.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] Length = 127 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ LT LA K L +S + ++ I P++E++ KI + + Sbjct: 4 GHKLKTLRKQRGLTQKELAEKLFLSQSSITRFEKDEI-----LPTSETLSKIANYFDVS- 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + L +K G+ Sbjct: 58 --IDFLLDRPQPPQKKNSNLEKAFNEAIEELKDEETLLFMKNGDIDEE 103 >gi|312141149|ref|YP_004008485.1| transcriptional regulator [Rhodococcus equi 103S] gi|325674029|ref|ZP_08153719.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311890488|emb|CBH49806.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555294|gb|EGD24966.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 155 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 5/82 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I E ++ LA+ AG+ ++ +R R PS + + +I Sbjct: 20 QDIGSFIRSQREAAQVSLRQLAQLAGVSNPYLSQIERG-----LRKPSADVLAQIAKGLR 74 Query: 67 ETICQLLDLPFSDGRTTEKKEK 88 + L + + Sbjct: 75 VSSEVLYVQAGILEQRPHSPVR 96 >gi|312200129|ref|YP_004020190.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311231465|gb|ADP84320.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 273 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +++ + I +++ LA++AG+ ++ +R R PS E + + Sbjct: 1 MAALHVRELGDYIRDQRRAAHISLRQLAQQAGVSNPYLSQIERG-----LRKPSAEILQQ 55 Query: 61 ILAATNET 68 I A + Sbjct: 56 IAKALRIS 63 >gi|226322725|ref|ZP_03798243.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] gi|225208886|gb|EEG91240.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] Length = 194 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 57/203 (28%), Gaps = 20/203 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H I E I ++ +T L GL + ++ P+ +S+ + Sbjct: 1 MLDLAH--IGERIRECRKKKMMTIRVLGEYTGLSAGYLSMLEQNKT-----SPNVDSLAR 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I A + I L+ ++E L + + + + Sbjct: 54 ICEALDIDIQYALEGEMPGKTVIHREEMSKHLYPEENMTVEVADFGQG---ESIFEYITI 110 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL------YRKGDILILNSAIQV---NCG-DR 170 S Y + + T + + GD + + S + N G + Sbjct: 111 EPGESAKKEEYRHVFSEMCMVIKGTLNVEVEGKICSLHPGDSVYIKSRERHSISNPGKEP 170 Query: 171 LLIKPRTGDIVAKVLISRRGRSI 193 + V + + + Sbjct: 171 CVSIWVYHRDVPRRFERNENKIV 193 >gi|224535505|ref|ZP_03676044.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus DSM 14838] gi|224522872|gb|EEF91977.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus DSM 14838] Length = 69 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++I + I + + L+ + LA + P + + + + + K Sbjct: 1 MEMNDRERIGKRIAEIRKSKGLSQAKLAELTDIAPGNIARIETGRYST-----GIDLLSK 55 Query: 61 ILAATNE 67 I A Sbjct: 56 IADALGY 62 >gi|160913567|ref|ZP_02076257.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] gi|158434028|gb|EDP12317.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] Length = 227 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 14/48 (29%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 +KI I + LT L G+ S +K + Sbjct: 1 MMDQRKIGIFIATCRKEKGLTQEQLGELLGVTNKSISKWENGKSLPDP 48 >gi|254301853|ref|ZP_04969296.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157811641|gb|EDO88811.1| DNA-binding protein [Burkholderia pseudomallei 406e] Length = 88 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + AI ++ E + LA AGL+ + + +R S ++ K Sbjct: 1 MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTE 84 + A I +LL G Sbjct: 55 LARAFGVPIARLLSPAGDAGPPPH 78 >gi|291286562|ref|YP_003503378.1| helix-turn-helix domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883722|gb|ADD67422.1| helix-turn-helix domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 351 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 5/146 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E ++ + L G+ + + +R PS +I ++ Sbjct: 2 RLKELREERGVSQAELGEFLGVSRQTIAAWENG-----DREPSVLQFSRICKLLKVSLEL 56 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 LLD S + + LL V I Sbjct: 57 LLDEEHSAEPVLLFRADKRELLSNDMRRICATKAYDYANIEAIVGAVPTIPITHHLYEYD 116 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDIL 157 + + +T+D + GD+L Sbjct: 117 EVVIEKKALETRDWLGIEDAPLGDVL 142 >gi|121730295|ref|ZP_01682667.1| fumarate reductase flavoprotein subunit [Vibrio cholerae V52] gi|121627957|gb|EAX60522.1| fumarate reductase flavoprotein subunit [Vibrio cholerae V52] Length = 176 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 2/106 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + L + +A+ G+ ++ K + E + + KIL + + +CQ Sbjct: 10 LREARTKLGLKQNEVAKLVGVTAQTYLKWENGKSEPKISQAG--KLAKILKISEKELCQG 67 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 T ++ E+ L + P + + + Sbjct: 68 EFHKQKMEPLTFIRKVEVLLRHVPHAEFLIGIQEYIDDEEGFIEML 113 >gi|21219711|ref|NP_625490.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|6468452|emb|CAB61612.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 191 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 11/143 (7%) Query: 3 SFSHKKIWE----AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + + + ++ + +T + L+ G+ ++ ++ + R PS E + Sbjct: 1 MTTPDDVLAGVGPRLRQVRKEREVTLAALSEATGISVSTLSRLESG-----LRRPSLELL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I A + +L+ P + ++P + G + Sbjct: 56 LPIARAHQVPLDELVGAPPVGDPRVRARPVVRHGRTHWPLTRQAGGLQAFKVLEPQSREE 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRH 140 P + +Y + + Sbjct: 116 PD-PRTHEGYEWLYVLSGRLRLV 137 >gi|77464212|ref|YP_353716.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126463054|ref|YP_001044168.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|77388630|gb|ABA79815.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126104718|gb|ABN77396.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] Length = 211 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S+ I + + ++ + L+ SGL+ ++G+ + ++ +R PS +I +I Sbjct: 1 MNSNHLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGR-----PSLRTIERIS 55 Query: 63 AATNETICQLLDLPFSDGRTT 83 A LL++P Sbjct: 56 QALGVPPFWLLEMPDQHNPEH 76 >gi|326776661|ref|ZP_08235926.1| nickel-type superoxide dismutase maturation protease [Streptomyces cf. griseus XylebKG-1] gi|326656994|gb|EGE41840.1| nickel-type superoxide dismutase maturation protease [Streptomyces cf. griseus XylebKG-1] Length = 142 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179 PE R G + + SM+P GD+L++ V+ GD ++++ Sbjct: 2 PERRQVSGGGRVTRRPLRVVEVTGPSMVPTLYHGDLLLVQYGAPVSPGDVVILRHPFQQD 61 Query: 180 -IVAKVLISRRGRSIDLMSLN 199 +V K RR + N Sbjct: 62 LLVVKRATERRPGGWWVRGDN 82 >gi|291536345|emb|CBL09457.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis M50/1] Length = 179 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 11/137 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + ++ LT LA ++ L ++ +R PS ++ I+ Sbjct: 2 DIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQN-----SPSIGTLLDIIQCLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIR 124 T + EK+ G+ N V + P Sbjct: 57 TPAEFFTDEE---PEQIVFEKDDYFEKISEDGNKMIEWIIPNAQKNSMEPVRLTLKPGGS 113 Query: 125 SPHNGIYAIQTQDTRHK 141 S + +A + K Sbjct: 114 SDTHLPHAGEEFGYVLK 130 >gi|257886679|ref|ZP_05666332.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257895254|ref|ZP_05674907.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257897876|ref|ZP_05677529.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] gi|257822733|gb|EEV49665.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257831819|gb|EEV58240.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257835788|gb|EEV60862.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] Length = 180 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 15/139 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56 Query: 68 TICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 T + D +E L + + + + Sbjct: 57 TPEEFFHQEAANLQVVYSKEDHTVYFDEENGYELEWLVADSNEKEMEPVLLTFEGAGEYK 116 Query: 119 GVPEIRSPHNGIYAIQTQD 137 S I+ ++ + Sbjct: 117 TFEPSLSE-TFIFVLEGEL 134 >gi|255513995|gb|EET90259.1| transcriptional regulator, XRE family [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 291 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/162 (10%), Positives = 35/162 (21%), Gaps = 16/162 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-------------EGRNRWPSTE 56 E I + + ++ LA++ GL S + + GR+ TE Sbjct: 127 GELIKSLRKLSGMSREDLAKEVGLSKDSIYRYESGKSWISKKNLKKLEDYFGRSLKFDTE 186 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +L + + + + F Sbjct: 187 EYANVLEPIGTSSKGMKFTYIRKDPFRMIGKGRKRYEIGRLANQRTMKKWSEFYRKLNEE 246 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 P + S+ + D L+ Sbjct: 247 FDDYPFYLTERKVY---SKSINGVPVISRSIFDSLQDEDALL 285 >gi|251788781|ref|YP_003003502.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537402|gb|ACT06023.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + L+ A K GLD T + +R R P+ E ++ + + Sbjct: 11 LGQRVKMLRLQAGLSQEAFAEKCGLDRTYISGIERGV-----RNPTLEVLYILATGLHTD 65 Query: 69 ICQLLDLPFS 78 + L Sbjct: 66 LTTLFVFRDP 75 >gi|227892270|ref|ZP_04010075.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227865911|gb|EEJ73332.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 220 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 +KI + I + + N T + LA K G+ + +K + Sbjct: 20 QEKIGKFIAKCRKEQNFTQANLAEKLGITNQAVSKWENGKS 60 >gi|227552156|ref|ZP_03982205.1| transcriptional regulator [Enterococcus faecium TX1330] gi|227178738|gb|EEI59710.1| transcriptional regulator [Enterococcus faecium TX1330] Length = 213 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 15/139 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 35 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 89 Query: 68 TICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 T + D +E L + + + + Sbjct: 90 TPEEFFHQEAANLQVVYSKEDHTVYFDEENGYELEWLVADSNEKEMEPVLLTFEGAGEYK 149 Query: 119 GVPEIRSPHNGIYAIQTQD 137 S I+ ++ + Sbjct: 150 TFEPSLSE-TFIFVLEGEL 167 >gi|149914326|ref|ZP_01902857.1| DNA binding protein, putative [Roseobacter sp. AzwK-3b] gi|149811845|gb|EDM71678.1| DNA binding protein, putative [Roseobacter sp. AzwK-3b] Length = 288 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 9/125 (7%) Query: 1 MTSFSHKKIWEAIDRMA-----ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M + K++ + R+ + S LAR G+D ++ ++ + R P+ Sbjct: 1 MVEKTDKRLRADLFRLRLTTALNERGSSQSALARAVGVDRSTISQLLKGQG---ARLPNA 57 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNK 114 + + + A + LL L + + L P + G K Sbjct: 58 QVVGECARALGVSADWLLGLTDRPETAADILATSMSLTEAPRALVDEQIFQWHKEAAGYK 117 Query: 115 WNTVG 119 V Sbjct: 118 IRHVP 122 >gi|69245031|ref|ZP_00603189.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257879271|ref|ZP_05658924.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881911|ref|ZP_05661564.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257883903|ref|ZP_05663556.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257890099|ref|ZP_05669752.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257892889|ref|ZP_05672542.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|258615672|ref|ZP_05713442.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO] gi|260558717|ref|ZP_05830906.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|261208793|ref|ZP_05923230.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289566416|ref|ZP_06446843.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|293553978|ref|ZP_06674581.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|293563215|ref|ZP_06677668.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|293567490|ref|ZP_06678836.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|293573068|ref|ZP_06684008.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|294614455|ref|ZP_06694371.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|294617942|ref|ZP_06697547.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|294622380|ref|ZP_06701409.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|314937335|ref|ZP_07844675.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314940969|ref|ZP_07847872.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314949058|ref|ZP_07852420.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|314953462|ref|ZP_07856378.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994151|ref|ZP_07859458.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995961|ref|ZP_07861041.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|68196032|gb|EAN10464.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257813499|gb|EEV42257.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817569|gb|EEV44897.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257819741|gb|EEV46889.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257826459|gb|EEV53085.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257829268|gb|EEV55875.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|260075176|gb|EEW63489.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|260077295|gb|EEW65015.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289161791|gb|EFD09664.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|291589799|gb|EFF21601.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|291592763|gb|EFF24356.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|291595751|gb|EFF27039.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|291598140|gb|EFF29243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|291601861|gb|EFF32110.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|291604810|gb|EFF34291.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|291606861|gb|EFF36243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|313589837|gb|EFR68682.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591418|gb|EFR70263.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594495|gb|EFR73340.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313600201|gb|EFR79044.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313643286|gb|EFS07866.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313644535|gb|EFS09115.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 180 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 15/139 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56 Query: 68 TICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 T + D +E L + + + + Sbjct: 57 TPEEFFHQEAANLQVVYSKEDHTVYFDEENGYELEWLVADSNEKEMEPVLLTFEGAGEYK 116 Query: 119 GVPEIRSPHNGIYAIQTQD 137 S I+ ++ + Sbjct: 117 TFEPSLSE-TFIFVLEGEL 134 >gi|299820914|ref|ZP_07052803.1| transcriptional regulator [Listeria grayi DSM 20601] gi|299817935|gb|EFI85170.1| transcriptional regulator [Listeria grayi DSM 20601] Length = 69 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + ++ E L+ LA K G+ + + ++ PS E K+ A + Sbjct: 2 KVKNNVKKLREEKELSQVELAAKMGVSRQTIHAIEKEKY-----SPSLELALKLAAFFEK 56 Query: 68 TICQLLDLPF 77 I + L Sbjct: 57 AIEMVFYLEE 66 >gi|228952237|ref|ZP_04114326.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807365|gb|EEM53895.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 146 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 5/109 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + ++ E + +A+K G+ + K + +P +++ + N Sbjct: 2 NLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYKWENDKS-----YPDIDNLILLSEMYNV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 T+ +L+ + ++ G + + Sbjct: 57 TLDELIKGNQDFKKKIHSDAEDEDFEKGNEFGFYIGCGLLILSAFVDYE 105 >gi|297582579|ref|YP_003698359.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141036|gb|ADH97793.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 210 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 5/79 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + NL+ + +A + G+ + +K + PST + ++ Sbjct: 3 LGTTISQRRKELNLSQAFVAEEMGVSRQAVSKWETGQSV-----PSTAHLIRLAEVLGCD 57 Query: 69 ICQLLDLPFSDGRTTEKKE 87 + L + +E Sbjct: 58 VQDLAEPDQEAQPAQPAEE 76 >gi|163803395|ref|ZP_02197270.1| LexA repressor [Vibrio sp. AND4] gi|159172799|gb|EDP57644.1| LexA repressor [Vibrio sp. AND4] Length = 99 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 D + SM + GD+L ++ V G + + D+ K L + G S Sbjct: 4 PKADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VARVDDDVTVKRLERK-GSS 61 Query: 193 IDLMSLNCCYPVDTVEM 209 + L + N + V++ Sbjct: 62 VLLHAENEEFSPIQVDL 78 >gi|28870080|ref|NP_792699.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213966893|ref|ZP_03395043.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301381575|ref|ZP_07229993.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302061669|ref|ZP_07253210.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302134354|ref|ZP_07260344.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853326|gb|AAO56394.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213928215|gb|EEB61760.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|331015365|gb|EGH95421.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 182 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + L+ LAR++G+ + + ++ + PS S+ K+L T+ Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58 Query: 70 CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 G+ + + + PS F P ++ Sbjct: 59 ADFFTFDQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAP---GADS 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 P + S + + GD Sbjct: 116 GEEPIVHSEGEECGLVTRGTVELTINGQVNILG----------------PGDGYYFPTTL 159 Query: 178 GDIVAKVLISRRGRSIDLMSLN 199 + +++S N Sbjct: 160 PH----RFRNIGQDEAEIISSN 177 >gi|39997635|ref|NP_953586.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984527|gb|AAR35913.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298506575|gb|ADI85298.1| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing [Geobacter sulfurreducens KN400] Length = 181 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + R+ ++LT LA +A L ++ + PS ++ IL Sbjct: 2 KIGERLKRLRMINSLTQEELANRADLTKGYISQLENDAT-----SPSIATLKDILDVFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 ++ + P + K + P Sbjct: 57 SMQEFFSDPIGEDVVYGKDARVQPSADDAAVM 88 >gi|314933990|ref|ZP_07841355.1| toxin-antitoxin system, antitoxin component, Xre family [Staphylococcus caprae C87] gi|313654140|gb|EFS17897.1| toxin-antitoxin system, antitoxin component, Xre family [Staphylococcus caprae C87] Length = 109 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 5/99 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ +I I + N++ S LAR+ G+ ++ ++ R Sbjct: 1 MRNNDEIITIIKSAMKEQNMSLSELARRVGVAKSAVSRYLNLT-----REFPLNRTEDFA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 A + + LL S+ + + K + L Sbjct: 56 KALSISTEYLLGFDKSEQQDEQPKHRAAHLEGELTDEEW 94 >gi|306825566|ref|ZP_07458905.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431927|gb|EFM34904.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 69 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 9/66 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + + I + ++ L+ LA + G+ + + + + S E+ K Sbjct: 1 MSKQTQNR----IRELRKQSRLSQQALADQIGVFRNTISNWETGYSQ-----ISLENAKK 51 Query: 61 ILAATN 66 + Sbjct: 52 VAEYFG 57 >gi|295838009|ref|ZP_06824942.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74] gi|295826798|gb|EFG65058.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74] Length = 120 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 5/98 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MVSLDVGGLGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 + A + L + +L P+ Sbjct: 56 LAKALRISAETLYVQAGILDERDRSEAGTRAVLLADPA 93 >gi|302870146|ref|YP_003838783.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315503577|ref|YP_004082464.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302573005|gb|ADL49207.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410196|gb|ADU08313.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 216 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + ++ LA +AG+ ++ +R R PS E + ++ +A Sbjct: 9 DVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERG-----LRKPSAEVLQQLASALRV 63 Query: 68 TICQLL 73 + + Sbjct: 64 STPAMY 69 >gi|257880858|ref|ZP_05660511.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260562694|ref|ZP_05833195.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|261209352|ref|ZP_05923730.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|257815086|gb|EEV43844.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260072923|gb|EEW61277.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|260076680|gb|EEW64429.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] Length = 153 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + + + + T +ARK + + +K + P E++ KI Sbjct: 2 EDLGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTT-----PDIETLKKICEF 54 >gi|253578952|ref|ZP_04856223.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849895|gb|EES77854.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 170 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 5/105 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + +N T LA K GL P + ++ R P + I K++ N + Sbjct: 3 IESRIKDLRIENNYTQRELAAKIGLTPKMISFYEKGE-----RVPPLDIIVKLVQIFNVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 LL L + + + + + + Sbjct: 58 SDYLLGLSDKRYPDEDLGWRSPHIENRFGKILSDYRRTNDISISD 102 >gi|224477323|ref|YP_002634929.1| putative transcriptional regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421930|emb|CAL28744.1| putative transcriptional regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 68 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + R + LA+KAG+ + + +R PS + KI E I Sbjct: 4 RLKELRARDGYNQTQLAKKAGISRQTVSLIERNEF-----MPSVLTAAKIARIFGERIED 58 Query: 72 LL 73 + Sbjct: 59 IF 60 >gi|253988431|ref|YP_003039787.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988437|ref|YP_003039793.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638957|emb|CAR67572.1| putative phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779881|emb|CAQ83042.1| putative phage regulator [Photorhabdus asymbiotica] gi|253779887|emb|CAQ83048.1| putative phage regulator [Photorhabdus asymbiotica] Length = 133 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + E NL+ LA G+DP ++N+ ++ P E++ KI TI Sbjct: 18 ERLRLLREARNLSQVRLAELLGVDPRAYNRWEKGAS-----APHLETVIKIADVLQVTID 72 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97 +L+ + L Sbjct: 73 ELVGRKAISDEVKIRNHTLHSLWQKAD 99 >gi|120613133|ref|YP_972811.1| putative phage repressor [Acidovorax citrulli AAC00-1] gi|120591597|gb|ABM35037.1| putative phage repressor [Acidovorax citrulli AAC00-1] Length = 234 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 2/97 (2%) Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 D SM P GD++ +++ ++ + G + + Sbjct: 132 HEWLERRSLRARDLIAIAVGDDSMQPSLHPGDVVAVDTRDPSPADGQVFVVDYEGACLVR 191 Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARIL 219 ++ + L + N +P + + R++ Sbjct: 192 RVVRDS-GAWWLAAENALRFPRKQLTAPSARLVGRVV 227 >gi|69248820|ref|ZP_00604806.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257894941|ref|ZP_05674594.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|294623392|ref|ZP_06702249.1| transcriptional regulator [Enterococcus faecium U0317] gi|68194345|gb|EAN08856.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257831320|gb|EEV57927.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|281336179|gb|ADA62728.1| hypothetical membrane protein [Enterococcus faecium] gi|291597192|gb|EFF28386.1| transcriptional regulator [Enterococcus faecium U0317] Length = 153 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + + + + T +ARK + + +K + P E++ KI Sbjct: 2 EDLGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTT-----PDIETLKKICEF 54 >gi|302546759|ref|ZP_07299101.1| putative helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302464377|gb|EFL27470.1| putative helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 101 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R + + LAR+AG+ + + + PST ++ ++ A + Sbjct: 37 EIGRTVHRCRTELGWSQTELARRAGMTQPAIARLETSLT-----LPSTRTLLRVATALGQ 91 Query: 68 TIC 70 + Sbjct: 92 PLH 94 >gi|192360811|ref|YP_001984256.1| Helix-turn-helix domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686976|gb|ACE84654.1| Helix-turn-helix domain protein [Cellvibrio japonicus Ueda107] Length = 152 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 2/112 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + + LA GL + + +R G S S+F++ AT E+ Sbjct: 3 VRKLRLQRGWSQEQLAELTGLSIRTIQRIERGSKPGLETIKSLASVFEVDPATFESGADD 62 Query: 73 LDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + K I Y F +F G++ + P Sbjct: 63 MSEQPLKVDEVEAMQYVKGIKEFYSHVLMYVVFTSVFLFSGGHQIEHIYWPF 114 >gi|182436037|ref|YP_001823756.1| putative signal peptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464553|dbj|BAG19073.1| putative signal peptidase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 142 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179 PE R G + + SM+P GD+L++ V+ GD ++++ Sbjct: 2 PERRQVSGGGRVTRRPLRVVEVTGPSMVPTLYHGDLLLVQYGAPVSPGDVVILRHPFQQD 61 Query: 180 -IVAKVLISRRGRSIDLMSLN 199 +V K RR + N Sbjct: 62 LLVVKRATERRPGGWWVRGDN 82 >gi|169823920|ref|YP_001691531.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302379963|ref|ZP_07268442.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|303234408|ref|ZP_07321047.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] gi|167830725|dbj|BAG07641.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302312189|gb|EFK94191.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|302494524|gb|EFL54291.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] Length = 134 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ E LT + LA K G+ + + + G R + + KI N Sbjct: 4 GSKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQ----DMYKKIAEFFN 56 >gi|167766444|ref|ZP_02438497.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] gi|167711853|gb|EDS22432.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] Length = 260 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S++K + + + NLT LA K + + +K +R P+ + Sbjct: 8 MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 62 Query: 61 ILAATNETICQ 71 I + T+ + Sbjct: 63 IADILDVTVTE 73 >gi|325846548|ref|ZP_08169463.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481306|gb|EGC84347.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 65 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 I ++ + + L LA+K G+ + + + PS E KI Sbjct: 5 IKKLRKENGLRQEDLAKKLGVSRQTIIAIENNKYD-----PSLELAIKI 48 >gi|300717762|ref|YP_003742565.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661] gi|299063598|emb|CAX60718.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661] Length = 69 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 5/73 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + +LT LA L+ T + + R PS +I K Sbjct: 1 MKTLLQVYFGKRVALLRKDKHLTQEALAEACDLNRTYLSGLETG-----KRNPSLSTISK 55 Query: 61 ILAATNETICQLL 73 + A + ++ Sbjct: 56 LAKALGIQMKEIF 68 >gi|291540762|emb|CBL13873.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 111 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 8/74 (10%), Positives = 23/74 (31%), Gaps = 5/74 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + L+ LA K + + K + E P+ + + + + ++ Sbjct: 1 MNRLKDLRREMGLSQQALADKLNVSQQTICKYENNTNE-----PNIDMLEAMADIFDVSV 55 Query: 70 CQLLDLPFSDGRTT 83 L+ + Sbjct: 56 DYLIGYSSYAHKVE 69 >gi|289167024|ref|YP_003445291.1| transcriptional regulator [Streptococcus mitis B6] gi|288906589|emb|CBJ21422.1| transcriptional regulator [Streptococcus mitis B6] Length = 68 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 17/41 (41%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 ++ + + R L + LA+ AG+ + + +R Sbjct: 2 QLKNRLKELRARDGLNQTDLAKLAGVSRQTVSLLERDEYTP 42 >gi|251800099|ref|YP_003014830.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547725|gb|ACT04744.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 150 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 5/91 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + M + LA K + S +K + +PS E I KI TI Sbjct: 4 GEKLKAMRQSKGWPQDELAEKLFVSRQSVSKWENNQN-----YPSIEIIIKISDLFGVTI 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 +LL + K +++ S Sbjct: 59 DELLRSDEELTQKVIKDSRQLAYPRLKASFD 89 >gi|148807463|gb|ABR13534.1| phage-related DNA-binding protein [Pseudomonas aeruginosa] Length = 400 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 4/116 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ LT GLA G + +K + PS I + + + Sbjct: 11 ERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSS--YPTAPSFHKICEFFGVSESWLL 68 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + P + + + + + + + ++ P I P Sbjct: 69 EKPIKSGFLRPSFFRSQVTTPKISWDVADARLDWLEEI--SYKLQESLEFPPINIP 122 >gi|197118272|ref|YP_002138699.1| transcriptional regulator with cupin-like beta-barrel domain [Geobacter bemidjiensis Bem] gi|197087632|gb|ACH38903.1| transcriptional regulator with cupin-like beta-barrel domain, putative [Geobacter bemidjiensis Bem] Length = 188 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 64/200 (32%), Gaps = 23/200 (11%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S I I ++ LT +A + G P ++ + + P ++ KI Sbjct: 1 MSSEYNIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNV-----SPPIATLSKIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP---PSGSGGFFDSGVFPTGNKWNTVG 119 + + Q + R + + ++ G+F + Sbjct: 56 KFFDVKLAQFFSEDEDNRRFEVVRADQRTIVPRVISKEGTRQGYFYESLSFYKQNKKMDA 115 Query: 120 V---PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 ++P Y+ ++ + T+ D ++ + I +N GD L + Sbjct: 116 FMVTLTEKAPEANTYSHDGEEFIYVMNGTA--------DFILEDQKITLNEGDSLYFEST 167 Query: 177 TGDIVAKVLISRRGRSIDLM 196 G L+S G+ + ++ Sbjct: 168 LGH----RLLSHDGKEVRVL 183 >gi|256379559|ref|YP_003103219.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923862|gb|ACU39373.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 155 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 4/76 (5%) Query: 1 MTSFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTE 56 M S S +++ + ER N + AR+ G+ + G PS Sbjct: 1 MHSGSGEQVTTLGGRLQAAIERRNWSGREAARRLGISQQTVRNLLADQTHRGDPFRPSRA 60 Query: 57 SIFKILAATNETICQL 72 ++ KI E + Sbjct: 61 TLLKIADGLGEPVHPW 76 >gi|226325982|ref|ZP_03801500.1| hypothetical protein COPCOM_03796 [Coprococcus comes ATCC 27758] gi|225205524|gb|EEG87878.1| hypothetical protein COPCOM_03796 [Coprococcus comes ATCC 27758] Length = 219 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 61/203 (30%), Gaps = 33/203 (16%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +F+ K++ E + NLT L ++ G++ ++ + + G++ + R + + L Sbjct: 9 TFTAKQVGERVKERRTELNLTMPELGKRIGVNKSTIQRYEADGVDPK-RTMIINGLAEAL 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------------------- 100 T E + L + D RT +K+ E + + S Sbjct: 68 LTTPEWLTGLSEDKEYDSRTLCEKDLEEHIKKYIDIVSTVVNGEPHQQLLTTFLGKMIDL 127 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 + + V E YAI++ + M + Sbjct: 128 YSVLCYHFSDAMAEVDRVAEDEGLKQSLRRYAIESGAITERVYHKEMEAPIEDMKRFL-- 185 Query: 161 SAIQVNCGDRLLIKPRTGDIVAK 183 D +L G K Sbjct: 186 --------DGILHIYDEGRTAVK 200 >gi|229815035|ref|ZP_04445372.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] gi|229809265|gb|EEP45030.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] Length = 155 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + + + + + LA G+ + +K + G +GR + + +I Sbjct: 29 QLADRLLDLRRKAGYSQEQLADLLGVSRQAISKWE--GAQGRPEVDNVVKLAQI 80 >gi|83593651|ref|YP_427403.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576565|gb|ABC23116.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 474 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + R+ E LT + LAR + P+ N+ +R R + + +I AA Sbjct: 9 RLQRLREERGLTQAALARTLEISPSYLNQMERNQ-----RPLTVPVLLRINAAFG 58 >gi|318059210|ref|ZP_07977933.1| hypothetical protein SSA3_14776 [Streptomyces sp. SA3_actG] Length = 174 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ I + E L+ S LAR++GL + + + R P+ E+++ + A Sbjct: 7 EVGARIRELREARALSLSALARRSGLGKATLSGLEAGT-----RNPTLETLYAVTTALG 60 >gi|302520593|ref|ZP_07272935.1| predicted protein [Streptomyces sp. SPB78] gi|302429488|gb|EFL01304.1| predicted protein [Streptomyces sp. SPB78] Length = 211 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ I + E L+ S LAR++GL + + + R P+ E+++ + A Sbjct: 44 EVGARIRELREARALSLSALARRSGLGKATLSGLEAGT-----RNPTLETLYAVTTALG 97 >gi|297158106|gb|ADI07818.1| transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 193 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I +I + R L+ S LA++AG+ ++ ++ + PS E+++ I Sbjct: 18 RIAASIRKERGRAGLSLSELAKRAGIAKSTLSQLESGAGN-----PSVETLWAISVTL 70 >gi|292491070|ref|YP_003526509.1| hypothetical protein Nhal_0949 [Nitrosococcus halophilus Nc4] gi|291579665|gb|ADE14122.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 253 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 18/44 (40%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 + I + + R+ E + S LAR+ + P + + + Sbjct: 66 PMRLGEYIADTVKRLREEQGWSQSELARRVKVKPQNIQQLEDGT 109 Score = 39.0 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 4/125 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + N+T LA +G+ +K + + S+ K L +E Sbjct: 2 NLGERLKKARLEANMTQRQLAETSGVKQQMISKLEVGRASETS---DIVSLAKALGVRSE 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSP 126 + + + ++ + S + TV P Sbjct: 59 WLDSGEEPMRLGEYIADTVKRLREEQGWSQSELARRVKVKPQNIQQLEDGTVKQPRYLME 118 Query: 127 HNGIY 131 ++ Sbjct: 119 LARVF 123 >gi|256789205|ref|ZP_05527636.1| regulatory protein [Streptomyces lividans TK24] gi|289773098|ref|ZP_06532476.1| regulatory protein [Streptomyces lividans TK24] gi|289703297|gb|EFD70726.1| regulatory protein [Streptomyces lividans TK24] Length = 191 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 44/143 (30%), Gaps = 11/143 (7%) Query: 3 SFSHKKIWE----AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + + + ++ + +T + L+ G+ ++ ++ + R PS E + Sbjct: 1 MTTPDDVLAGVGPRLRQVRKEREVTLAALSEATGISVSTLSRLESG-----LRRPSLELL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 I A + +L+ P + ++P + G + + Sbjct: 56 LPIARAHQVPLDELVGAPPVGDPRVRARPVVRHGRTHWPLTRQAGGLQAFKVLEPQRREE 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRH 140 P + +Y + + Sbjct: 116 PD-PRTHEGYEWLYVLSGRLRLV 137 >gi|241763784|ref|ZP_04761831.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241367003|gb|EER61399.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 102 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 SH I ++ + LT + LA +AGL + + EG P ++ ++ Sbjct: 1 MSHDLI-ASLALARKAAGLTQAQLAERAGLSRMTVQR-----TEGGELDPRFSTLAEMAR 54 Query: 64 ATNETIC 70 + Sbjct: 55 VLGMDLM 61 >gi|258511714|ref|YP_003185148.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478440|gb|ACV58759.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 436 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 50/193 (25%), Gaps = 25/193 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + I + + +T S LAR GL + ++ + PS + + I A Sbjct: 2 ETLGQKIRALRKARGMTQSELAR--GLATASMISQIESDRT-----MPSAQLLAHIAARL 54 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + L + ++ P Sbjct: 55 GVDVSEFQRELAGSSEEAHTYRRAKQLAEQGHYEEAIRH----------FLSLSWPLHSQ 104 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVAK 183 + D K D R D L+ GD ++ G + + Sbjct: 105 FRPELVFQDMGDCYLKVGD--YEQAARLYDALVF---AGFARGDMSSVVRGYYYGALARR 159 Query: 184 VLISRRGRSIDLM 196 L + L Sbjct: 160 RLQRDEEAILYLQ 172 >gi|154500872|ref|ZP_02038910.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] gi|150270372|gb|EDM97698.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] Length = 157 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 8/156 (5%), Positives = 36/156 (23%), Gaps = 3/156 (1%) Query: 3 SFSHKK---IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + + ++ ++ L+ +A K G+ + +K + R ++ Sbjct: 2 MLQEENAMSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAML 61 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + +E + + + + T + Sbjct: 62 YNMTLDELIEYDFDEQQAQQMIESVSEEAQARIDWNKVWSKKYPVLATYHRTVRIDDYAP 121 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 + + +++ Sbjct: 122 TLREMLTQLRVDYGYNNTDALLVLKDILARVWKGQM 157 >gi|332830065|gb|EGK02693.1| hypothetical protein HMPREF9455_00943 [Dysgonomonas gadei ATCC BAA-286] Length = 216 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 15/197 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 W+ + ++ E NL+ + A GL + + + K+ SI K LA T Sbjct: 5 WDRLVKVIESTNLSINKFATSIGLKRSENLYRIKKGKN----------SISKDLAEQITT 54 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + E S F + + + +PE Sbjct: 55 KYCNISKAWLLTGEGTMYINESEENRKSSSKKKIPFYDSIIMDSDAQTEITLPEPLYYIE 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLIS 187 SM P G I+ L + + + + K L + Sbjct: 115 VPSLANCDLAALFV-GESMKPEIPSGSIVALKEINLHLILPGEMYLIVTDKYTTIKYLRT 173 Query: 188 RRGR--SIDLMSLNCCY 202 + L+ N Y Sbjct: 174 VNENNALLRLIPRNTEY 190 >gi|326774009|ref|ZP_08233291.1| transcriptional regulator [Actinomyces viscosus C505] gi|326636148|gb|EGE37052.1| transcriptional regulator [Actinomyces viscosus C505] Length = 146 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 2/138 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + ++H T LA K G+ + K + G S + + + + Sbjct: 2 INSNIATLRKKHRWTQEALANKVGVSRQTIAKWE--APGGNPDISSCVRLAHVFDVSIDD 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + K ++ + VF + + +I Sbjct: 60 LVNGDTSFVAMLDRPGKYIFGTVVIDQDGRLTLPVRARQVFNIKAGDELLLIGDIDRGLA 119 Query: 129 GIYAIQTQDTRHKTQDTS 146 +Y + Sbjct: 120 LMYTQFFVQAARHVEGDH 137 >gi|296162693|ref|ZP_06845479.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295887081|gb|EFG66913.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 113 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + ++ LT LA GL T + + + PS E+I KI T Sbjct: 3 IAARLATLRKQKGLTQQALADAIGLHITQIKRYEAGTSQ-----PSLEAIKKIARTLRVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 L+ + + + Sbjct: 58 TDSLIFEEEELEPDADLAMQFQAI 81 >gi|269127822|ref|YP_003301192.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312780|gb|ACY99154.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 99 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 ++ EA+ E LT + LA +AGL + + + G P E + + L Sbjct: 32 QLGEAVRLRREELGLTQAQLAERAGLKQPAVARFEAGGTMPTI--PMLERLAEALEM 86 >gi|220909656|ref|YP_002484967.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866267|gb|ACL46606.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 239 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 19/43 (44%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + +R LT S A G+ + ++ ++ + + R+ Sbjct: 169 LQTLRQRLGLTQSQFAATLGVTLMTISRWEKGRGKPKRRFMPL 211 Score = 41.3 bits (95), Expect = 0.097, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + +R T A++ G+ + ++ + +R S S+ +++ Sbjct: 16 ILTLRQRTGWTKEEFAQRLGVSLQTIINWEQGKCQPMSR--SILSLQQLMQELE 67 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 3/97 (3%) Query: 2 TSFSHK-KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + + + I + R L+ A G+ + ++ + R I + Sbjct: 80 ATLGQEPSLAHLILTLRHRMGLSQVEFAALLGVTFKTVISWEKERCQPNPRL--MAQIER 137 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 ++ + LL L F + L Sbjct: 138 LVQQLGDRGTDLLQLYFPHPTVPTEPSTARLLQTLRQ 174 >gi|313202884|ref|YP_004041541.1| peptidase s24/s26a/s26b, conserved region [Paludibacter propionicigenes WB4] gi|312442200|gb|ADQ78556.1| Peptidase S24/S26A/S26B, conserved region [Paludibacter propionicigenes WB4] Length = 258 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 29/213 (13%) Query: 26 GLARKAGLDPTSFNKSKRFGI-----------EGRNRWPSTESIFKILAATNETICQLLD 74 LA+ + P + G + W + +L + + Sbjct: 20 ELAKFLEITPQILSNWDSRGTFDLHKIYTKCVDVSPDWILSNGQGNMLRSNYTQNENEVR 79 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 + K + + D F N ++ + +P+ P N Y Sbjct: 80 KINLSKPNNDLNIKIHIVDTSVITKVSDQLDEINF---NVFDCIVLPKTALPDNYKYL-- 134 Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTG-DIVAKVLI-SR 188 SMLP D +++ + + + + K + Sbjct: 135 ----CINMSGNSMLPTLYDKDKIVVRLLKKSEWYEMPNEHVYVVVDKNKKTYIKRVRNKL 190 Query: 189 RGRSIDLMSLNCC---YPVDTVEMSDIEWIARI 218 I S N YP + SDI I + Sbjct: 191 NNGFIVCTSDNLDKMNYPCFNIAESDIMSIWHV 223 >gi|257483709|ref|ZP_05637750.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012135|gb|EGH92191.1| ultraviolet light resistance protein A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 131 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 8/103 (7%) Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168 P Y + SM + D++ ++ +++ Sbjct: 30 PAAAHIEQDFSSGRLMDVRAPY-----IYVAQIDSDSMRGIGIFDADLIAVDRSLKAGHK 84 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 ++ G+ + K L + + L S N Y + + Sbjct: 85 SIVIAAVN-GEPMCKRLCIKGDD-VSLQSENPSYAAKYILKGE 125 >gi|269122272|ref|YP_003310449.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268616150|gb|ACZ10518.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 180 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 7/134 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + + + LT + LA + L ++ +R PS ++ IL Sbjct: 2 KIGEKLKSLRQEKLLTQNELADRCELSKGFISQLERDLT-----SPSLSTLEDILEVLGT 56 Query: 68 TICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I + + + + E ++ T+ P R Sbjct: 57 NIRDFFNETQQEKIVFSVEDFYEFQNEELGYEIKWIIPNAQKNKMEPILITLE-PGGRYK 115 Query: 127 HNGIYAIQTQDTRH 140 + + Sbjct: 116 LEVAHEGEEFGYVL 129 >gi|229825438|ref|ZP_04451507.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] gi|229790001|gb|EEP26115.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] Length = 116 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 2/100 (2%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++ ++ LT LA GL PT+ + + E + ++ K T + + Sbjct: 6 RLKQLRQKKGLTQGELANILGLKPTAISNYESNRNE--PSFDKLIALSKEFDVTCDYLLG 63 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + D G KE L + + Sbjct: 64 ISDSALPIGGEILDKEIVDFFLVYQQLMPESAASVRDYAE 103 >gi|198276387|ref|ZP_03208918.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135] gi|198270829|gb|EDY95099.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135] Length = 120 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E + + +T LA + G + T N+ +R + S +I A Sbjct: 59 GEILRERRKELGMTQKELAERVGRERTYINRIERGETD-----LQLSSFIRIAEALG 110 >gi|331092206|ref|ZP_08341036.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401978|gb|EGG81552.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium 2_1_46FAA] Length = 347 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E I + + +T +A G+ + NK + P + I Sbjct: 2 KIGEVIRKYRKEKQMTQEEMAEYLGVTTPAVNKWENGNS-----MPDISLLAPIARLLGI 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|325831430|ref|ZP_08164684.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325486684|gb|EGC89132.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 205 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 E + + LT LA + + T+ +K + G G S +++ ++ Sbjct: 4 GEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGG--GSPNLDSLQAVARLFD 55 >gi|317490559|ref|ZP_07949035.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] gi|316910339|gb|EFV31972.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] Length = 205 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 E + + LT LA + + T+ +K + G G S +++ ++ Sbjct: 4 GEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGG--GSPNLDSLQAVARLFD 55 >gi|300917191|ref|ZP_07133875.1| helix-turn-helix protein [Escherichia coli MS 115-1] gi|300415568|gb|EFJ98878.1| helix-turn-helix protein [Escherichia coli MS 115-1] Length = 178 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 40/160 (25%), Gaps = 11/160 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ ++ + S LA + + +R P+ +++KI N Sbjct: 12 LKQLRQQRGWSLSRLAEATRVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129 + P S + +++ ++ G + + H Sbjct: 67 ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Q +G + G Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163 >gi|298694333|gb|ADI97555.1| probable transcriptional regulator [Staphylococcus aureus subsp. aureus ED133] Length = 179 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 51/179 (28%), Gaps = 30/179 (16%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + NLT LA + L ++ + PS E+ I+ Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126 T + ++ +K+E+ I Y G+ + + N+++ + P Sbjct: 57 TPSEFFKDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111 Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 + ++ + I +N G + + K Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEIYQAQEEDVLYFK 153 >gi|226312429|ref|YP_002772323.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226095377|dbj|BAH43819.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 466 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 3/112 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + I++ T S L G++P + ++ R + + + Sbjct: 9 HQSLRSEIEQHRRARGYTLSKLGDLTGINPGTLSEILNGKP---PRAITISQLDALAEVF 65 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +L + K + + Y S G D Sbjct: 66 GYEPGWMYELYPDECLYEGKISRPRLIPYLIRSAENGRKDCIEAVASQLLEN 117 >gi|22536979|ref|NP_687830.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76787451|ref|YP_329560.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76799305|ref|ZP_00781471.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae 18RS21] gi|77405543|ref|ZP_00782634.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae H36B] gi|77410671|ref|ZP_00787030.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] gi|22533834|gb|AAM99702.1|AE014229_3 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76562508|gb|ABA45092.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76585348|gb|EAO61940.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae 18RS21] gi|77163207|gb|EAO74159.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] gi|77175850|gb|EAO78628.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae H36B] Length = 71 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R + + LA+ G+ + + +R PS KI E+ Sbjct: 5 LKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYT-----PSVIIAMKISQVFKES 59 >gi|298385377|ref|ZP_06994935.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|298261518|gb|EFI04384.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 103 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I EAI + + N+T LA+K G+ +K + R + ++ ++ A Sbjct: 37 IGEAIKKARKSQNMTQEELAQKIGVQRAQVSKIESG------RNLTLSTVARVFRAMGME 90 >gi|255024118|ref|ZP_05296104.1| transcription regulator, putative [Listeria monocytogenes FSL J1-208] Length = 110 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS E++F IL Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE 89 T D + + + + Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78 >gi|228478091|ref|ZP_04062702.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] gi|228250271|gb|EEK09524.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] Length = 169 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 12/167 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I N T QL E + T + + Sbjct: 55 IAEYFNATPTQLFGTSKEIELEKSVLESNEYSDKVSEILKAVKYIEHFLQT----DGQYL 110 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI--LILNSAIQV 165 ++ G TS + I+ Sbjct: 111 EDLLYLTRGNQLYTEDGDELYIDPTSQKRTFHNQYEPGFIVARDKSP 157 >gi|322388557|ref|ZP_08062158.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140596|gb|EFX36100.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 67 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R L + LA+ AG+ + + +R PS KI + Sbjct: 2 LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIIIALKIAQIFH 54 >gi|297626284|ref|YP_003688047.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922049|emb|CBL56613.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 511 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 1 MT-SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 MT + +I I ++ +T + LA + ++ ++ + S E+I Sbjct: 1 MTQETTPARIGRLIRDARKQRGMTQNQLAEELSTSQSAIHRIESGHQN-----LSLETIN 55 Query: 60 KILAATN 66 +I A Sbjct: 56 RIAGALE 62 >gi|264680621|ref|YP_003280531.1| hypothetical protein CtCNB1_4489 [Comamonas testosteroni CNB-2] gi|262211137|gb|ACY35235.1| hypothetical protein CtCNB1_4489 [Comamonas testosteroni CNB-2] Length = 104 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +H + E I + L+ LA+ A + ++ ++ + G R +++ ++ Sbjct: 1 MTH--LGERIRARRQALGLSQGRLAQMADVTASAISQIE----SGAIRTLKNDTLARLAI 54 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKE 89 A T +L+ S+ + E+ Sbjct: 55 ALQTTALELMAGLHSETASLPSDEQR 80 >gi|257879453|ref|ZP_05659106.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813681|gb|EEV42439.1| predicted protein [Enterococcus faecium 1,230,933] gi|295100939|emb|CBK98484.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 101 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + I + + H LT LA + G+ + + + Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNR 75 >gi|227509610|ref|ZP_03939659.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190972|gb|EEI71039.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 125 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 8/120 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + + + +NL+ LA+K + + +K ++ P ++ K Sbjct: 1 MTML---QFSKQLKKYRAANNLSQDDLAKKLFVSRQAISKWEQGDAT-----PDLNNLVK 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + N ++ L+ T ++ + G + F W + Sbjct: 53 LAEIFNISLDTLVLGASETKSTVDQNQYTFDPTSGLYKRRYGQMNFWDFLARFWWLIFPI 112 >gi|239814566|ref|YP_002943476.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801143|gb|ACS18210.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 262 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 19/43 (44%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 + + +R T + LA ++G+ T+ ++++R Sbjct: 36 PTLDRTTFGHRLRAARKRFGWTLAQLAERSGVSITTISRAERG 78 >gi|170692929|ref|ZP_02884090.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170141927|gb|EDT10094.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 217 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 61/200 (30%), Gaps = 31/200 (15%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-------------- 47 S HK + + + + LT + L+ ++G+ ++ +K++R I Sbjct: 20 PSLDHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 79 Query: 48 -------GRNRWPSTESIFKILAATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSG 99 GR R P+ ++ A + ++ +P+ + Sbjct: 80 LEFDAIFGRRRKPAAGAMKPSFTAAGKQQVYDTPNYEYGMLANNLTGKRMMPMRAHIHAR 139 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 + F + +G + S + + R S+ Y + + Sbjct: 140 AVADFPEYIRHSGE-----EFVFLLSGKLELRFENGKSFRL-MPGDSL---YFDSSVGHI 190 Query: 160 NSAIQVNCGDRLLIKPRTGD 179 ++ D L+ T + Sbjct: 191 YVSVGEEDADALVCCVDTDE 210 >gi|304321631|ref|YP_003855274.1| XRE family transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303300533|gb|ADM10132.1| transcriptional regulator, XRE family protein [Parvularcula bermudensis HTCC2503] Length = 226 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 3/128 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I +R L L R+ G+ + + + R + L T Sbjct: 17 DTIGQRIKAARKRCRLNQENLGRELGVSQPTVANWEADIHQ--PRPFMLGKLADRLEVTV 74 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRS 125 + + PL + P + ++ + + S Sbjct: 75 GWLAGGDEGGSVSVDHPMASYLRRPLRHVPIYNARPLAGLQSLVNLEATFDPIEFLPVSS 134 Query: 126 PHNGIYAI 133 +G+ A+ Sbjct: 135 EADGLVAL 142 >gi|158317899|ref|YP_001510407.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158113304|gb|ABW15501.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 277 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + I ++ LAR+AG+ ++ +R R PS E + + Sbjct: 1 MAAIHVRDVGDFIREQRRGAQISLRQLARQAGVSNPYLSQIERG-----LRRPSAEILQQ 55 Query: 61 ILAATNET 68 I A + Sbjct: 56 IAKALRIS 63 >gi|312887464|ref|ZP_07747063.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300104|gb|EFQ77174.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 262 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 18/164 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S KKI E I + + + + +A + +++++ + ++PS ES+ KI + Sbjct: 5 LSKKKIGERIRSVRLERHYSQAFVASILNISRSNYSQIEIGN-----QFPSFESLSKIAS 59 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 +++ LL +D + + ++ E Sbjct: 60 YYSKSYEWLLHGQEADPYVENSARSSQEI----QAEKKVPSKILYVTESAEYARNLKSES 115 Query: 124 RSPHNGIYAIQT---------QDTRHKTQDTSMLPLYRKGDILI 158 H ++ + + + +ML GD+LI Sbjct: 116 YLKHLPVFDLPGSFIVDHARYRAFTIDSSGNNMLKYINTGDLLI 159 >gi|311279701|ref|YP_003941932.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748896|gb|ADO48648.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 180 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 40/117 (34%), Gaps = 7/117 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ + S LA + G+ + +R P+ +++KI N Sbjct: 11 LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSLF 65 Query: 73 LDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + P S+ + +++ + + L+ + S + G + H Sbjct: 66 ITPPESEAAAYDPQQQAMVVTPLFPWDAELRFDHFSIMLAPGALSESAPHEAGVIEH 122 >gi|307545860|ref|YP_003898339.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217884|emb|CBV43154.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 179 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + + S LA AG+ ++ ++ ++ P+ ++I++ Sbjct: 4 MDKLSLSTLGQHLQTLRRARGWSLSQLATAAGIAKSNLSRLEQGDGN-----PTLDTIWR 58 Query: 61 ILAATNETI 69 + N Sbjct: 59 LAVQLNVPF 67 >gi|255528296|ref|ZP_05395109.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255508014|gb|EET84441.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 71 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + LT + LA K GL + ++ +R I+ PS S+ KI + Sbjct: 2 LGPKIREIRQEKGLTLNELADKTGLTASYLSQIERNIID-----PSLSSLRKISLSLEVP 56 Query: 69 ICQL 72 I Sbjct: 57 IYTF 60 >gi|330470351|ref|YP_004408094.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328813322|gb|AEB47494.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 226 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + ++ LA +AG+ ++ +R R PS E + ++ +A Sbjct: 9 DVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERG-----LRRPSAEVLQQLASALRV 63 Query: 68 TICQLL 73 + + Sbjct: 64 STPAMY 69 >gi|330468037|ref|YP_004405780.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811008|gb|AEB45180.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 192 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + T S LA G+ ++ ++ + R P+ E + + A Sbjct: 11 VGPRLRALRKNRGTTLSELADTTGISVSTLSRLESGQ-----RRPTLELLLPLARAHQVP 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91 + +L+ P + Sbjct: 66 LDELVGAPAVGDPRVHPRPIVRH 88 >gi|307711152|ref|ZP_07647574.1| putative transcriptional regulator [Streptococcus mitis SK321] gi|307617114|gb|EFN96292.1| putative transcriptional regulator [Streptococcus mitis SK321] Length = 149 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/139 (8%), Positives = 33/139 (23%), Gaps = 12/139 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + L+ LA G+ + + + + E ++ ++ Sbjct: 1 MNRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKP-----EKAKQLADYFGVSV 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL+ S + + ++ E H Sbjct: 56 GYLLNYTNSKKDPFDGYIPTPREYRSWQEFDYMQLSKTDL---DFYDY----EKLRKHLE 108 Query: 130 IYAIQTQDTRHKTQDTSML 148 +A++ D Sbjct: 109 PFALELMLNYFFCTDDERE 127 >gi|291543337|emb|CBL16446.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus sp. 18P13] Length = 110 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + I + L+ LA AG PT + +R + ES+ KI +A + Sbjct: 6 KIIGQRIRNYRTQKGLSQEKLAELAGCHPTYIGQLERGEKNA-----TLESVEKIASAMD 60 Query: 67 ETICQ 71 ++ + Sbjct: 61 ISLSE 65 >gi|293364648|ref|ZP_06611369.1| xre family toxin-antitoxin system [Streptococcus oralis ATCC 35037] gi|307702906|ref|ZP_07639854.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|291316906|gb|EFE57338.1| xre family toxin-antitoxin system [Streptococcus oralis ATCC 35037] gi|307623586|gb|EFO02575.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] Length = 67 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R L + LA+ AG+ + + +R PS KI + Sbjct: 2 LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIVIALKIAQIFH 54 >gi|154504585|ref|ZP_02041323.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260590057|ref|ZP_05855970.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795067|gb|EDN77487.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260539569|gb|EEX20138.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 65 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + + ++ S LA + + ++ + P+ E KI N Sbjct: 2 NLGENIRKARKAAGVSQSELAERLQVHQKDISRWENGA-----HAPTIEMFAKICRELNA 56 Query: 68 TICQ 71 + + Sbjct: 57 SADE 60 >gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] Length = 360 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 5/86 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + LT LA G+ + +K + P + ++ + Sbjct: 5 LAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCV-----PDVSLMMELAEFFETS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY 94 + LL ++ E+ L Sbjct: 60 VDVLLGYEQQSMALEDRLERLKNLRM 85 >gi|307130525|ref|YP_003882541.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306528054|gb|ADM97984.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 102 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + L+ A K GLD T + +R R P+ E I I Sbjct: 40 RFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGV-----RNPTLEVIGVIADRLE 93 >gi|304395940|ref|ZP_07377822.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304356309|gb|EFM20674.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 82 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + +R+ T S LA+K GL + + + S ++FK+L A Sbjct: 7 QLANQLKFIRQRNGWTQSELAKKVGLKQATISHFENA-----PDSTSLATLFKLLQALEV 61 Query: 68 T 68 + Sbjct: 62 S 62 >gi|254883834|ref|ZP_05256544.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641491|ref|ZP_07996181.1| hypothetical protein HMPREF9011_01778 [Bacteroides sp. 3_1_40A] gi|254836627|gb|EET16936.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386892|gb|EFV67781.1| hypothetical protein HMPREF9011_01778 [Bacteroides sp. 3_1_40A] Length = 789 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 29/182 (15%) Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +S+ K LAA E + + + ++ + L + + G+F G + Sbjct: 606 DKSLAKYLAAQLEPQHESIPKLRIEPEINDEVKYIDFLPLYSIRAACGYFGEGELVDESG 665 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL-- 171 W V + + + SM PL GD + + G + Sbjct: 666 WMKVE---------SMGKLNRNMFIVQAVGHSMEPLIHDGDYCVFRANPAGSRQGKIILA 716 Query: 172 -----LIKPRTGDIVAKVLISRRG---------RSIDLMSLNCCYPVDTVE---MSDIEW 214 G K+ S++ I L+ N Y +E + Sbjct: 717 EHHNYYDPDYAGSYSIKIYTSKKSFDEEGNWAHEEILLLPKNSIYSPIVIEEENADEFRI 776 Query: 215 IA 216 + Sbjct: 777 VG 778 >gi|300362045|ref|ZP_07058222.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] gi|300354664|gb|EFJ70535.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 115 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + +LT LA+ + PT+ + + E PS +++ + N Sbjct: 2 NIAQRIKDLRLSKHLTQKELAQLLNVKPTTISGWELGRNE-----PSIDTLKDLAHIFNV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 ++ + + + + + E + G + Sbjct: 57 SVDYMAGDTENQNKDKKSIDLEKDPVVLSYGGRPVSDEDMEV 98 >gi|222151038|ref|YP_002560192.1| type-1 signal peptidase 1B [Macrococcus caseolyticus JCSC5402] gi|222120161|dbj|BAH17496.1| type-1 signal peptidase 1B [Macrococcus caseolyticus JCSC5402] Length = 194 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHK-TQDTSMLPLYRKGDILILNS----AIQVNCGDRLLI 173 + I Y + T SM P ++ + +I+N ++ GD ++ Sbjct: 8 WIISILVALVVFYIVHTFLFATYAVNGDSMFPTFKDKERVIINKISTKTDSIDRGDIIVF 67 Query: 174 KPRTGDIVAKVLISRRGRSID 194 T + K LI + G +++ Sbjct: 68 HTDTKNDYIKRLIGKPGDTVE 88 >gi|253700937|ref|YP_003022126.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251775787|gb|ACT18368.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 188 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 23/200 (11%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S I I ++ LT +A + G P ++ + + P ++ KI Sbjct: 1 MSSEYNIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNV-----SPPIATLSKIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP---PSGSGGFFDSGVFPTGNKWNTVG 119 + + Q + + + + ++ G+F + Sbjct: 56 KFFDVKLAQFFSEDEDNRKFEVVRADQRTIVPRVISKEGTRQGYFYESLSFYKQNKKMDA 115 Query: 120 V---PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 ++P Y+ ++ + T+ D ++ + I +N GD L + Sbjct: 116 FMVTLTEKAPEANTYSHDGEEFIYVMNGTA--------DFILEDQKITLNEGDSLYFEST 167 Query: 177 TGDIVAKVLISRRGRSIDLM 196 G L+S G+ + ++ Sbjct: 168 LGH----RLLSHDGKEVRVL 183 >gi|86739621|ref|YP_480021.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566483|gb|ABD10292.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 121 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 5/124 (4%) Query: 1 MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M+ H++ + + I R L+ LAR+ G+ P++ ++ + P+ E + Sbjct: 1 MSEAGHREPLGQRIRRARLDRQLSGVQLARRVGVHPSNISRIENGDTT----SPTAELLQ 56 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +I A +LL +P ++ T Sbjct: 57 RIAHALELDQAELLVYLGLTVPRAIPPLHAYLRATYPGLPDEAIQEAEDAVTRIAERYEA 116 Query: 120 VPEI 123 P Sbjct: 117 GPRE 120 >gi|320528113|ref|ZP_08029278.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131461|gb|EFW24026.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 176 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 KI + + + + +T LA + G+ + ++ + P + + ++ Sbjct: 5 KIGKLLQTLRKEKGITQEQLAEQVGVTRRTVSRWETGSN-----MPDLDVLIELSDF 56 >gi|317047445|ref|YP_004115093.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316949062|gb|ADU68537.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 187 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/166 (9%), Positives = 46/166 (27%), Gaps = 10/166 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58 + ++ + + + + L+ G+ + ++ +R + ++ Sbjct: 6 TEDRLAARLAELRLQRGWSLDELSMATGISRATLSRIERAETSPTAALLNRLCVAYGLTM 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++L+ + LL E + + P + GV G++ + Sbjct: 66 SRLLSEVEDEAPLLLKPEQQPVWVDELSGFQRRNVSPPATHFRAEMVEGVLQPGSRIDYD 125 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 P + + + GD L + + Sbjct: 126 APPIQGLEQHIWLQSGE----LTISMEAQSWTLQAGDCLRFHLTGK 167 >gi|237735295|ref|ZP_04565776.1| predicted protein [Mollicutes bacterium D7] gi|229381040|gb|EEO31131.1| predicted protein [Coprobacillus sp. D7] Length = 70 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + + N++ LA + GL + +R R S +SI KI + Sbjct: 9 GHRIKELRLKQNISQEELAFRCGLSKNYISDVERGT-----RNVSLKSIEKIANGFAVNL 63 Query: 70 CQLLDLP 76 +L D Sbjct: 64 KELFDFK 70 >gi|229544959|ref|ZP_04433684.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|307287527|ref|ZP_07567570.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|229309851|gb|EEN75838.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|306501265|gb|EFM70568.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315164925|gb|EFU08942.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 180 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T Q + + +E+ G+ + P N+ V + Sbjct: 57 TPEQFFSQQPLEQKIVYNEEESTLYY----DEEHGYELKWLIPASNEKEMEPVIITFDKN 112 Query: 128 NGI 130 Sbjct: 113 GEY 115 >gi|134298751|ref|YP_001112247.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051451|gb|ABO49422.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I ++ L+ + L+R++G+ + + + R P+ + I +I + Sbjct: 2 DIGSRIKKLRTYQGLSMNELSRRSGVAQSHLSYVESGQ-----RQPTFDVIERICSGLGL 56 Query: 68 TICQLLDLPFSDGR 81 ++ + + F Sbjct: 57 SVAEFFNEGFMPSP 70 >gi|325697795|gb|EGD39679.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] gi|327466976|gb|EGF12490.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 170 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 41/167 (24%), Gaps = 12/167 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I N T QL E + T + + Sbjct: 55 IAEYFNATPTQLFGTSKEIELEKSVLESNEYSDKVSEILKAVKYIEHFLHT----DGQYL 110 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI--LILNSAIQV 165 ++ G TS I+ Sbjct: 111 EDLLYLTRGNQLYTEDGDELYIDPTSQKRTLHNQYEPGFIVARDKSP 157 >gi|325847281|ref|ZP_08169999.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480912|gb|EGC83961.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 167 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + NLT LA++ + + +K ++ E PS +++ K+ Sbjct: 2 IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSE-----PSMDNLVKLSEIFGVD 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 I + + + K L Sbjct: 57 IKYFKNNDEKENDSFISKIFWDFLY 81 >gi|315037492|ref|YP_004031060.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325955952|ref|YP_004286562.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|312275625|gb|ADQ58265.1| putative transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325332517|gb|ADZ06425.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 169 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ + I + ++ L+ LA K + + +K + P E I + Sbjct: 2 KLGQKIAELRKKSGLSQEALAEKMNVSRQAVSKWESNQSI-----PDIEKIVDLSELFG 55 >gi|291532130|emb|CBK97715.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 106 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E + ++ +T LA + + + + + R PS E+I KI Sbjct: 5 GERVKQLRLSAGMTQEQLAERIWVTKAAISNYE-----LSERNPSPETIIKIAGVFG 56 >gi|289549667|ref|YP_003470571.1| Transcriptional regulator, Cro/CI family [Staphylococcus lugdunensis HKU09-01] gi|315659694|ref|ZP_07912555.1| transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289179199|gb|ADC86444.1| Transcriptional regulator, Cro/CI family [Staphylococcus lugdunensis HKU09-01] gi|315495427|gb|EFU83761.1| transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 67 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R + LA+KAG+ + + +R PS + KI E++ Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAMKIARIFGESVE 57 Query: 71 QLLDLPF 77 + + Sbjct: 58 DVFIIEE 64 >gi|197106670|ref|YP_002132047.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196480090|gb|ACG79618.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 479 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 44/159 (27%), Gaps = 15/159 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ LT + +A G+ P+ N +R R + + + ++ A + Sbjct: 12 LGARLKRLRRDLGLTQTRMAEDLGVSPSYLNLLERNQ-----RPVTAQVLLRLAEAYDLD 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L P S T + + + G V E Sbjct: 67 LKTLSSDPESASATDLAEVFSDQMFRDLGVARHEVAEVADSAPG-------VSEAIVRLY 119 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167 Y Q + + + ++ + V Sbjct: 120 RAYLDQRRLSELGQVGRPEEGAFENS---VVTPSDWVRD 155 >gi|169639269|gb|ACA60745.1| SodX [Streptomyces peucetius ATCC 27952] Length = 139 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198 + SM+P GD L+++ GD +++ + ++ K L RRG ++ Sbjct: 16 EVTGPSMVPTLVHGDQLLVDYRATFRTGDVAVLRHPLQQDLLIVKRLAERRGEGWWVLGD 75 Query: 199 NC 200 N Sbjct: 76 NP 77 >gi|167749402|ref|ZP_02421529.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] gi|167657574|gb|EDS01704.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] Length = 124 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E + ++ +T LA + + + + + R PS E+I KI Sbjct: 23 GERVKQLRLSAGMTQEQLAERIWVTKAAISNYE-----LSERNPSPETIIKIAGVFG 74 >gi|160939992|ref|ZP_02087337.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC BAA-613] gi|158436572|gb|EDP14339.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC BAA-613] Length = 74 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ I ++ + L+ LA KAGLD T + R S S+ KI+ A + Sbjct: 10 KVGNRIRQLRKELLLSQESLAFKAGLDRTYIASVENG-----KRNLSIMSLEKIIVALDC 64 Query: 68 TICQLLDLPF 77 ++ + + Sbjct: 65 SMAEFFETFE 74 >gi|311747857|ref|ZP_07721642.1| toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] gi|126575850|gb|EAZ80160.1| toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] Length = 203 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T +K + E + + ++ + LA AG+ + + + P ++I ++ Sbjct: 3 TKMENKALGEKLKTLRLKNGFSQDELAESAGVSLRTVQRIENAEAV-----PRMDTIKRL 57 Query: 62 LAATNETICQLLDLPF 77 + ++LD Sbjct: 58 FQIFGMSPEEVLDWSQ 73 >gi|108757425|ref|YP_634451.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108461305|gb|ABF86490.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 185 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 21/172 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I + E T + L+R AG+ ++ + P+ + ++ AA Sbjct: 9 RLARNIRSLRETRGATQAQLSRLAGVPRATWAHLESGAAN-----PTLSVLHRVAAALQV 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ +L+ P + + + G P G +++ V +P Sbjct: 64 SLEELIAKPR---ASARHYPRATLPVRTRGGGMLRKLLPDPLP-GMEFDRVELPPQVRIT 119 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRT 177 + T T G+++++ S + + GD ++ + Sbjct: 120 GVPH----------TPGTREYLACESGELVLVASGERFHLQPGDVVVFRGDQ 161 >gi|107027576|ref|YP_625087.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693712|ref|YP_839245.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896950|gb|ABF80114.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116651712|gb|ABK12352.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 159 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 10/120 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I +A+ + +LT + LA+ AGL + N+ + G+ + + +L+ Sbjct: 5 EIGQAVAKRRAELDLTQAQLAKLAGLSRLTVNQLE----SGKVKDLGINKLIPLLSVLGI 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN------KWNTVGVP 121 + L + +G P G + V +P Sbjct: 61 ELLALPRQAQNGLYKAVVSANVSYKGELTERLLADALTTGRIPEGYESQFSVILDEVPLP 120 >gi|262280383|ref|ZP_06058167.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258161|gb|EEY76895.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 209 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 11/181 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T H + I + + L+ LA +AG+ + + + ++I + Sbjct: 32 TVLQH--VGTNIRSLRDERGLSQQDLADQAGVSRRTIAALE--TGQVNISLAKLDAIAAV 87 Query: 62 LAATNETICQLLDLPFSD-----GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L+ TI +L K+E + LL PS S + G + Sbjct: 88 LSVDFRTIVSAPELKEQTLVNVLAWQGNKEESKATLLASVPSRSQVELWTWSLAVG--ES 145 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + IY ++ + T T ++P + +N G+++L R Sbjct: 146 YIAEADAEGWQELIYVLEGELTIQFTDSIKIIPAGSSFSFASSVTYTYINSGNQVLKFMR 205 Query: 177 T 177 Sbjct: 206 N 206 >gi|255012031|ref|ZP_05284157.1| DNA-binding protein [Bacteroides fragilis 3_1_12] gi|313149871|ref|ZP_07812064.1| predicted protein [Bacteroides fragilis 3_1_12] gi|313138638|gb|EFR55998.1| predicted protein [Bacteroides fragilis 3_1_12] Length = 72 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ + + + E ++ LA +AGL T +R R PS I KI Sbjct: 11 KQFAQRVRTLREAQGISQEKLAERAGLHRTYIGMVERLE-----RNPSLVCIHKIANGLG 65 Query: 67 ETICQ 71 + + Sbjct: 66 VHVTE 70 >gi|118477924|ref|YP_895075.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|118417149|gb|ABK85568.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] Length = 69 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 9/77 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H +I T LA++ G+ + ++ PS FK Sbjct: 1 MFLLLHNRIV----VYRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFK 51 Query: 61 ILAATNETICQLLDLPF 77 I ++I + D Sbjct: 52 IANVFEKSITDVFDYQE 68 >gi|157164171|ref|YP_001466787.1| anthranilate synthase component II [Campylobacter concisus 13826] Length = 71 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARIL 219 GD L + + ++ K+L + ++S+N + V++S+ + + +++ Sbjct: 10 AFTGDGLYMVNFSNQLMVKILQLMPYGMLKIVSVNPDFQSYEVDLSETQEHFKIVDKVV 68 >gi|163941382|ref|YP_001646266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863579|gb|ABY44638.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 142 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I + ++ NLT LA K G+ + R+P + + K+ Sbjct: 2 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLSKLADCF 53 >gi|332879673|ref|ZP_08447366.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682390|gb|EGJ55294.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 111 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 36/93 (38%), Gaps = 5/93 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + ++I + I ++ T +A G++ S++ ++ R S E + +I Sbjct: 1 MITQEQILKNILKIRTDKGFTQQNVAEHLGIEQGSYSLIEKG-----RRELSIERLLQIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + ++ P + ++ + K + + Sbjct: 56 IFLGVDVKDIITYPNREYNNSDDEVKAVLQIEL 88 >gi|331646068|ref|ZP_08347171.1| repressor protein [Escherichia coli M605] gi|331044820|gb|EGI16947.1| repressor protein [Escherichia coli M605] Length = 218 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68 +AI+R+ E + T L G+ ++ + R + + + T + Sbjct: 38 KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 90 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L S + E+ ++ +P Sbjct: 91 LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 143 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + G ++ G+I + + Sbjct: 144 -------------VITDNNSEFICDKEF------DDIRDGKWIISID--GEITIRDITRL 182 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ DIE I +I+ Sbjct: 183 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 210 >gi|319744842|gb|EFV97180.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 72 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R + + LA+ G+ + + +R PS KI E+ Sbjct: 6 LKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYT-----PSVIIAMKISQVFKES 60 >gi|330910588|gb|EGH39098.1| repressor protein [Escherichia coli AA86] Length = 189 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68 +AI+R+ E + T L G+ ++ + R + + + T + Sbjct: 9 KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L S + E+ ++ +P Sbjct: 62 LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + + G ++ G+I + + Sbjct: 115 -------------VITDNNSEFICDKEF------DDIRDGKWIISID--GEITIRDITRL 153 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G I + N + ++ DIE I +I+ Sbjct: 154 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 181 >gi|229170554|ref|ZP_04298202.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621] gi|228612903|gb|EEK70080.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621] Length = 69 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 9/77 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H KI T LA++ G+ + ++ PS FK Sbjct: 1 MLLLLHNKIV----VCRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFK 51 Query: 61 ILAATNETICQLLDLPF 77 I ++I + D Sbjct: 52 IANIFEKSITDVFDYQE 68 >gi|254393361|ref|ZP_05008507.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294811335|ref|ZP_06769978.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326439932|ref|ZP_08214666.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197706994|gb|EDY52806.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294323934|gb|EFG05577.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 400 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I I + +LT +GLA++AG+ T+ K + P ++ + Sbjct: 1 MPHSQDDHIGARIADYRKLRHLTQAGLAQRAGVSRTTVAKIEAGLSPATP--PIVAAVAR 58 Query: 61 ILA 63 +L Sbjct: 59 VLE 61 >gi|163757791|ref|ZP_02164880.1| Transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] gi|162285293|gb|EDQ35575.1| Transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] Length = 182 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 9/118 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + ++ + + ++ + LA +G+ ++ ++ + + P+ E++ Sbjct: 1 MDTL-NDRLADRLKQLRATRGWSLQQLADISGVSRSALSRIETGEV-----SPTAETLGA 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +A TI QLL + + + E++ S P G V Sbjct: 55 MSSAFQMTISQLLAPVEAPFQPLVRAEEQSTWRDDENGFSRRVVSP---PAGGLSAEV 109 >gi|153955922|ref|YP_001396687.1| hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219856264|ref|YP_002473386.1| hypothetical protein CKR_2921 [Clostridium kluyveri NBRC 12016] gi|146348780|gb|EDK35316.1| Hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219569988|dbj|BAH07972.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 80 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + +T + LA K G++ + +K + PS +++KI A N T Sbjct: 2 LGTKIREYRKSLGMTATSLAEKVGVELATISKIENNKAN-----PSMPTLYKIAEALNTT 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 +L+ + + + Sbjct: 57 PSELIKDTEIKSFNINSEGTKEVV 80 >gi|89902154|ref|YP_524625.1| XRE family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346891|gb|ABD71094.1| transcriptional regulator, XRE family [Rhodoferax ferrireducens T118] Length = 169 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 4/102 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ A+ LT + LA+ GL + N+ + G R S K+L Sbjct: 6 ELSSAVRTRRADMGLTQTTLAKLTGLSRATVNQVEN----GTIRDLSLTRAAKLLGILGL 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 ++ P S T K ++ Sbjct: 62 SVTVTAPRPKSHSHQTAKSSALDIAARTASVSYRVSINADQL 103 >gi|302543610|ref|ZP_07295952.1| PbsX family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461228|gb|EFL24321.1| PbsX family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 133 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGDFLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L ++ + ++ Sbjct: 56 LAKALRISAETLYVQAGILDERDREETEVRSVI 88 >gi|77543203|gb|ABA87016.1| hypothetical protein [Vibrio cholerae] gi|259156517|gb|ACV96461.1| transcriptional regulator, XRE family [Vibrio cholerae Mex1] Length = 106 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + ++I +++ R + L+ ++G+ + +K + ++ R S ++ + Sbjct: 1 MSYVT-EQILKSLREARVRKGFSQRELSARSGVPQSHISKIESGSVD--LRISSLIALAR 57 Query: 61 ILA 63 +L Sbjct: 58 VLD 60 >gi|56419132|ref|YP_146450.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56378974|dbj|BAD74882.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 115 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 6/63 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H I E I + ++ ++ + A + + P + + G+ + K+ Sbjct: 1 MLQH--IGERIRVLRKQKGISLNAFAERLNVSPAYLSNLE----TGKTDTIQLSLLEKLQ 54 Query: 63 AAT 65 Sbjct: 55 EEL 57 >gi|291558136|emb|CBL35253.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 106 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E + ++ +T LA + + + + + R PS E+I KI Sbjct: 5 GERVKQLRLSAGMTQEQLAERIWVTKAAISNYE-----LSERNPSPETIIKIAGVFG 56 >gi|291514914|emb|CBK64124.1| Peptidase S24-like [Alistipes shahii WAL 8301] Length = 109 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 8/94 (8%) Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILIL----NSAIQVNCGDRLLIKPRTGD---IVAKVL 185 I D + SM PL + GDI+ + + G+ LI + K L Sbjct: 6 IPKCDGGLRIVGDSMYPLLKSGDIVFYKQVHDIMHSIIWGEMYLISFDIDGDEYVSVKYL 65 Query: 186 ISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 I L+S N + + ++ I +A I Sbjct: 66 QKSDIPDHIVLVSYNEHHKPMEIHINRIRALAFI 99 >gi|291445816|ref|ZP_06585206.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291348763|gb|EFE75667.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 205 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA G+ ++ +R R PS + + + Sbjct: 39 MASLNVGNLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERG-----LRKPSADVLQQ 93 Query: 61 ILAATNET 68 + A + Sbjct: 94 VAKALRIS 101 >gi|126650379|ref|ZP_01722607.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] gi|126593029|gb|EAZ87011.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] Length = 182 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 46/137 (33%), Gaps = 5/137 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I +M +++ ++ LA + L + +K + PS ++ KI + Sbjct: 5 EVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKAT-----PSLVTLSKIAEIFDV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + DG + K++ + G + N ++ + + Sbjct: 60 PMAWFVIQDQFDGISIVSKKERNETVETNQLGYQYELLANKSYMSNINPSIVTVHNGAEN 119 Query: 128 NGIYAIQTQDTRHKTQD 144 +Y + + + Sbjct: 120 LALYTHENDEFIYIISG 136 >gi|78222121|ref|YP_383868.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193376|gb|ABB31143.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 181 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + R+ ++LT LA +A L ++ + PS ++ IL Sbjct: 2 KIGERLKRLRMINSLTQEELANRADLTKGYISQLENDAT-----SPSIATLKDILDVFGV 56 Query: 68 TICQLLDLP 76 ++ + P Sbjct: 57 SMQEFFSDP 65 >gi|330877739|gb|EGH11888.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965172|gb|EGH65432.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 182 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 54/192 (28%), Gaps = 20/192 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + L+ LAR++G+ + + ++ + PS S+ K+L T+ Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPH 127 G+ + +G P+ P S Sbjct: 59 ADFFTFDQPPGQDQY-VFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAPGADSGE 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 I + ++ T+ ++ ++ GD + Sbjct: 118 EPIVHNEGEECGLVTRG-TVELTINGQVNILG-------PGDGYYFPTTLPH----RFRN 165 Query: 188 RRGRSIDLMSLN 199 +++S N Sbjct: 166 IGQDEAEIISSN 177 >gi|331085520|ref|ZP_08334605.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407758|gb|EGG87256.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 134 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I + + +T LA K G+ + +K +R P SI ++ Sbjct: 1 MKKQTLGVMIASIRKERGMTQLELAEKMGVTDKAVSKWERDLS-----CPDVSSIPQLAE 55 Query: 64 ATNETICQLLDLPF 77 ++ +L+ + Sbjct: 56 ILGVSVDELMQVKD 69 >gi|269103372|ref|ZP_06156069.1| transcriptional regulator XRE family [Photobacterium damselae subsp. damselae CIP 102761] gi|268163270|gb|EEZ41766.1| transcriptional regulator XRE family [Photobacterium damselae subsp. damselae CIP 102761] Length = 212 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 55/215 (25%), Gaps = 12/215 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I R+A+ ++ L GL + ++ R E+I T T Sbjct: 4 LERIKRLAKIQGISQKQLGEALGLQQGTMSRKLSGKYGIEVRE--LETIA----TTLNTS 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + D T F + +TV V R+ Sbjct: 58 IGYILTGQVDTGTQATTTITNESATGSTCTYIPVIHRKDFTSYASGDTVDVVSKRAIPQ- 116 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + ++ G + Q + R + + Sbjct: 117 -HLDREECLGLLVDNENIAQCAPVGSYALATKTAQYRPKQPVFASVRGSEPDFYHMTQLA 175 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221 + S +P V + E I+ WA Sbjct: 176 DGVVFSTSQ-PDFPNLFVNNGEFEVHGYIIQSDWA 209 >gi|229168347|ref|ZP_04296072.1| Helix-turn-helix domain protein [Bacillus cereus AH621] gi|228615173|gb|EEK72273.1| Helix-turn-helix domain protein [Bacillus cereus AH621] Length = 277 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 46/184 (25%), Gaps = 9/184 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ + + G S G + Sbjct: 69 FEVSL-DYLLKETAEQINETEHGYYVSTEMAEGYIVYGQKISKYIALGFSLLILSTIPYL 127 Query: 125 SPHNGIYAIQTQDTRHKTQD---TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + +L + + L + +++ Sbjct: 128 LFKEDVTMSTFLVIIIAVLGIGAMMVPATIEESRYNVLKKEELLFDQNFLKELTKRYEVI 187 Query: 182 AKVL 185 K Sbjct: 188 KKRY 191 >gi|196048104|ref|ZP_03115282.1| helix-turn-helix domain protein [Bacillus cereus 03BB108] gi|196021360|gb|EDX60089.1| helix-turn-helix domain protein [Bacillus cereus 03BB108] Length = 235 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + ++L+ S LA+K G+ ++ + PS I K+L N L Sbjct: 5 IKFYRKSNSLSQSELAKKMGVSQKRISQLENSMPNSST-EPSLTEIIKLLTIFNCNFEDL 63 Query: 73 LDLPFSDGRTTE 84 + + Sbjct: 64 FEFKRRNSEMPN 75 >gi|324997738|ref|ZP_08118850.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 163 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I E ++ LAR AG+ ++ +R R PS E + +I Sbjct: 45 EDIGSYIRSQREAAQVSMRQLARSAGVSNPYLSQVERG-----LRKPSAEILQQIAKGLR 99 Query: 67 ET 68 + Sbjct: 100 IS 101 >gi|319938593|ref|ZP_08012980.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319806229|gb|EFW02921.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 114 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + + ++ LA K G+ + +K + P E I + T Sbjct: 5 DRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQST-----PDLEKIIIMSDFFGVTTD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +L +K + + Sbjct: 60 YILKGIEPVADKEQKIKSLRVRYFI 84 >gi|296110909|ref|YP_003621290.1| transcriptional regulator, Cro/CI family [Leuconostoc kimchii IMSNU 11154] gi|295832440|gb|ADG40321.1| transcriptional regulator, Cro/CI family [Leuconostoc kimchii IMSNU 11154] Length = 192 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + + N + + LA G+ + + ++ + R P E+ K+ Sbjct: 1 MNRISELRKETNTSQTELAELLGVTRQAISLYEK-WPDKGGREPKLETWKKLADHFG 56 >gi|239941410|ref|ZP_04693347.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239987874|ref|ZP_04708538.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379] gi|291444855|ref|ZP_06584245.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291347802|gb|EFE74706.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 286 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/176 (9%), Positives = 40/176 (22%), Gaps = 29/176 (16%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + E LT LA A + + + + R PS E ++ Sbjct: 9 LKAQREAAGLTQQQLAELALMTRSHISHIEAG-----RRMPSEEDARRLDLVLGTGNVLT 63 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 P + G + + + Sbjct: 64 SFR--------------------PGAEDDGVLADYFGAARHLEQQATMIREFALSLLPGI 103 Query: 133 IQTQDTRHKTQDTSMLPLYR-KGDILILNSAIQVNCGDRL---LIKPRTGDIVAKV 184 +QT+ + PL + D ++ + + ++ + + Sbjct: 104 LQTEAYARSVLGMAFPPLSPAECDKAVVARLNRAKIFQGVKPPVVWAILDEASLRR 159 >gi|83950958|ref|ZP_00959691.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM] gi|83838857|gb|EAP78153.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM] Length = 199 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I A+ E L+ L++++G+ + +K + ++ R S S+ L Sbjct: 6 EHIAVALREARENKGLSQRELSKRSGVPQSHISKIESNNVD--LRLSSLASLAHALD 60 >gi|15923339|ref|NP_370873.1| transcription regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15926050|ref|NP_373583.1| hypothetical protein SA0337 [Staphylococcus aureus subsp. aureus N315] gi|148266836|ref|YP_001245779.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392881|ref|YP_001315556.1| hypothetical protein SaurJH1_0407 [Staphylococcus aureus subsp. aureus JH1] gi|156978677|ref|YP_001440936.1| hypothetical protein SAHV_0346 [Staphylococcus aureus subsp. aureus Mu3] gi|253316550|ref|ZP_04839763.1| hypothetical protein SauraC_10475 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005144|ref|ZP_05143745.2| hypothetical protein SauraM_01715 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795026|ref|ZP_05644005.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258413531|ref|ZP_05681806.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421345|ref|ZP_05684272.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258436954|ref|ZP_05689294.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258444329|ref|ZP_05692663.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258444866|ref|ZP_05693187.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A6300] gi|258448071|ref|ZP_05696200.1| transcription regulator [Staphylococcus aureus A6224] gi|258455904|ref|ZP_05703859.1| transcriptional regulator [Staphylococcus aureus A5937] gi|269201997|ref|YP_003281266.1| putative transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282893508|ref|ZP_06301741.1| transcriptional regulator [Staphylococcus aureus A8117] gi|282927402|ref|ZP_06335020.1| transcriptional regulator [Staphylococcus aureus A10102] gi|295405621|ref|ZP_06815431.1| hypothetical protein SMAG_00775 [Staphylococcus aureus A8819] gi|296275176|ref|ZP_06857683.1| putative transcriptional regulator, Cro/CI family protein [Staphylococcus aureus subsp. aureus MR1] gi|297245528|ref|ZP_06929396.1| transcriptional regulator [Staphylococcus aureus A8796] gi|13700263|dbj|BAB41561.1| SA0337 [Staphylococcus aureus subsp. aureus N315] gi|14246117|dbj|BAB56511.1| probable transcription regulator [Staphylococcus aureus subsp. aureus Mu50] gi|147739905|gb|ABQ48203.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149945333|gb|ABR51269.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|156720812|dbj|BAF77229.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788998|gb|EEV27338.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257839778|gb|EEV64247.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842769|gb|EEV67191.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257848745|gb|EEV72732.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850588|gb|EEV74536.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257856184|gb|EEV79098.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A6300] gi|257858586|gb|EEV81460.1| transcription regulator [Staphylococcus aureus A6224] gi|257862116|gb|EEV84889.1| transcriptional regulator [Staphylococcus aureus A5937] gi|262074287|gb|ACY10260.1| putative transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282590726|gb|EFB95802.1| transcriptional regulator [Staphylococcus aureus A10102] gi|282764194|gb|EFC04321.1| transcriptional regulator [Staphylococcus aureus A8117] gi|285816071|gb|ADC36558.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus 04-02981] gi|294969696|gb|EFG45715.1| hypothetical protein SMAG_00775 [Staphylococcus aureus A8819] gi|297177514|gb|EFH36765.1| transcriptional regulator [Staphylococcus aureus A8796] gi|312828871|emb|CBX33713.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129994|gb|EFT85983.1| hypothetical protein CGSSa03_03972 [Staphylococcus aureus subsp. aureus CGS03] gi|329725743|gb|EGG62222.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 67 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R L + LA+ AG+ + + +R PS + KI NET+ Sbjct: 3 NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57 Query: 71 QLLDLPF 77 + + Sbjct: 58 TVFIIEE 64 >gi|326331424|ref|ZP_08197714.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioidaceae bacterium Broad-1] gi|325950680|gb|EGD42730.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioidaceae bacterium Broad-1] Length = 508 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT +I I + LT + LA ++ N+ ++ S E I + Sbjct: 1 MTDGYKGRIGNLIRDARKHKGLTQAQLADLLNTSQSAINRIEQGQQN-----LSLEMIAR 55 Query: 61 ILAATNETICQ 71 + AA + ++ Sbjct: 56 VGAALDSSLVD 66 >gi|298717173|ref|YP_003729815.1| HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] gi|298361362|gb|ADI78143.1| Putative HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] Length = 192 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 5/135 (3%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + +I + ER + + LA +G+ +K +R P+ + ++ A Sbjct: 13 NARIGLKVKAERERRGWSLTDLAENSGVSRAMIHKIERGES-----SPTATLLARLSGAF 67 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + ++ QLL + E + G P + Sbjct: 68 DMSMSQLLAEMEVRTGVLVRYENQAVWQDPETGYIRRHASPGQIPVDLVSIELPANTAVP 127 Query: 126 PHNGIYAIQTQDTRH 140 Y + Q Sbjct: 128 MPAISYLSRRQLIWV 142 >gi|296875997|ref|ZP_06900055.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432988|gb|EFH18777.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 175 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 6/90 (6%), Positives = 26/90 (28%), Gaps = 5/90 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + L+ +A++ + + ++ + + + E ++ ++ Sbjct: 1 MNRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKP-----EKAQQLADCFGVSV 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 LL + P + Sbjct: 56 GYLLGYSEYRDSQEASYQLYQKDPDDPYNH 85 >gi|291521015|emb|CBK79308.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 253 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S++K + + + NLT LA K + + +K +R P+ + Sbjct: 1 MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 55 Query: 61 ILAATNETICQ 71 I + ++ + Sbjct: 56 IADILDVSVTE 66 >gi|163794397|ref|ZP_02188369.1| hypothetical protein BAL199_22059 [alpha proteobacterium BAL199] gi|159180565|gb|EDP65086.1| hypothetical protein BAL199_22059 [alpha proteobacterium BAL199] Length = 295 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 4/128 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E +++ +R T + LAR+ G+D ++ ++ R P +++ I +A ++ Sbjct: 21 ERLEQAMDRAGTTRAALARRIGVDRSTLSQVLSSESV---RLPRADTVAAIASALQVSLD 77 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 LL L S+ + E+ + + + + VP I Sbjct: 78 WLLGLTESNQLGADILERAPEISPRSRAPEDENLR-RWYAESAGYKIRYVPTNLPDPLKI 136 Query: 131 YAIQTQDT 138 + + Sbjct: 137 TEVVGHEY 144 >gi|160936523|ref|ZP_02083890.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] gi|158440314|gb|EDP18059.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] Length = 177 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + LT LA +A L ++ +R PS ++ IL Sbjct: 2 EIGSKLKELRVLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56 Query: 68 TICQLLD 74 TI + + Sbjct: 57 TIGEFFN 63 >gi|306521451|ref|ZP_07407798.1| putative phage DNA-binding protein [Clostridium difficile QCD-32g58] Length = 166 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 8/133 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + ++ ++ LT LA +G+ + + R PS +++ K+ A Sbjct: 2 QIGKNLKKIRKQKELTQIQLAEISGISRNALINYEND-----KRIPSIDTLSKLAKALKI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + E + L FD + N + S Sbjct: 57 EKTIFYFDIEN---EVMTNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLL 113 Query: 128 NGIYAIQTQDTRH 140 G ++ + Q + Sbjct: 114 LGAWSDKDQYYKL 126 >gi|134093774|ref|YP_001098849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] gi|133737677|emb|CAL60722.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 78 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K + E ++ LA KAGL T + +R R S +++ ++ A Sbjct: 14 RQKYGSRLRFAREALGISQEALAEKAGLHRTYIGQVERGE-----RNISIDNLERLADAV 68 Query: 66 NETICQL 72 E + ++ Sbjct: 69 GEQLWEM 75 >gi|119854959|ref|YP_935564.1| helix-turn-helix domain-containing protein [Mycobacterium sp. KMS] gi|119697677|gb|ABL94749.1| helix-turn-helix domain protein [Mycobacterium sp. KMS] Length = 399 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 3/95 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E IDR H ++ S +AR+ G+ + K + I G +R P E++ + + Sbjct: 5 RLVELIDRYRTAHGVSESEVARRIGMSRENLRKWR---INGVSRLPDRENLAAVARVIGK 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 +++ D + P + Sbjct: 62 PYREVVSAALFDTGYLTDDQASTPRPHDEVLHDAI 96 >gi|52141788|ref|YP_085042.1| transcriptional regulator [Bacillus cereus E33L] gi|51975257|gb|AAU16807.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 145 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I + ++ NLT LA K G+ + R+P + + K+ Sbjct: 5 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLSKLADCF 56 >gi|310830055|ref|YP_003962412.1| Transcriptional regulator [Eubacterium limosum KIST612] gi|308741789|gb|ADO39449.1| Transcriptional regulator [Eubacterium limosum KIST612] Length = 130 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 7/131 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I ++ + ++ L K G+ + K P+TE++ K+ N Sbjct: 2 NVLERIQKLGKEKGISVGFLEEKLGIGRGTIYKW-------NKSAPNTENLVKVADYFNV 54 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +I LL S EK +I + + + + +I Sbjct: 55 SIDYLLGRDHSLNEEDEKDIAKIMDKMKKQLANETDWVFDGEAMNPATIELLLQDIEQQE 114 Query: 128 NGIYAIQTQDT 138 + A+ Sbjct: 115 RIVKALNKNYI 125 >gi|332655055|ref|ZP_08420796.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515915|gb|EGJ45524.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 101 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + I + + H LT LA + G+ + + + Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNR 75 >gi|238894952|ref|YP_002919686.1| putative regulator [Klebsiella pneumoniae NTUH-K2044] gi|238547268|dbj|BAH63619.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 193 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 8/138 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + + LA +AG +K +R P+ + ++ A Sbjct: 9 NQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGES-----SPTASMLGRLSGAF 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ L+ + P+ P S S + +P Sbjct: 64 GISMSTLIARAEMQEGKLLR-FASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPGSD 122 Query: 126 PHNGI--YAIQTQDTRHK 141 YA+ Q + Sbjct: 123 VPMPAASYALARQLIWLQ 140 >gi|226948868|ref|YP_002803959.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843124|gb|ACO85790.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 370 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 M S I E I R+ + +T LA G+ + +K + Sbjct: 1 MEKLS---IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETS 43 >gi|257413803|ref|ZP_04744284.2| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|257202203|gb|EEV00488.1| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|291538784|emb|CBL11895.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis XB6B4] Length = 183 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 11/137 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + ++ LT LA ++ L ++ +R PS ++ I+ Sbjct: 6 DIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQN-----SPSIGTLLDIIQCLGT 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIR 124 T + EK+ G+ N V + P Sbjct: 61 TPAEFFTDEE---PEQIVFEKDDYFEKISEDGNKMIEWIIPNAQKNSMEPVRLTLKPGGS 117 Query: 125 SPHNGIYAIQTQDTRHK 141 S + +A + K Sbjct: 118 SDTHLPHAGEEFGYVLK 134 >gi|224535561|ref|ZP_03676100.1| hypothetical protein BACCELL_00425 [Bacteroides cellulosilyticus DSM 14838] gi|224522851|gb|EEF91956.1| hypothetical protein BACCELL_00425 [Bacteroides cellulosilyticus DSM 14838] Length = 266 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 10/114 (8%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC----G 168 +++ E P Q D SM P G ++L N G Sbjct: 148 EVSDSLEYAEKLIPFTDA---QEGDIALVVSGNSMDPTCPSGSKVLLREVQNWNEYFGFG 204 Query: 169 DRLLIKPRTGDIVAKVLIS---RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + ++ G + K + + S N YP + + S I + +++ Sbjct: 205 NIFVLLLTDGRRILKEVQKYQDDPKNYVLCKSHNDKYPEEELPKSMISSVWKVV 258 >gi|168180189|ref|ZP_02614853.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182668963|gb|EDT80939.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 370 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 M S I E I R+ + +T LA G+ + +K + Sbjct: 1 MEKLS---IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETS 43 >gi|152970466|ref|YP_001335575.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330003695|ref|ZP_08304714.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|150955315|gb|ABR77345.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328536870|gb|EGF63173.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 193 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 8/138 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + + LA +AG +K +R P+ + ++ A Sbjct: 9 NQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGES-----SPTASMLGRLSGAF 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ L+ + P+ P S S + +P Sbjct: 64 GISMSTLIARAEMQEGKLLR-FASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPGSD 122 Query: 126 PHNGI--YAIQTQDTRHK 141 YA+ Q + Sbjct: 123 VPMPAASYALARQLIWLQ 140 >gi|71907867|ref|YP_285454.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847488|gb|AAZ46984.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 119 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ + ++ T +A + G+D + ++ +R PS ++ ++ A Sbjct: 13 KRLGGNLSERRKQLGWTQEMVAERVGVDAETISRIERGA-----HLPSLPTLDRLAVALR 67 Query: 67 ETICQ 71 + Sbjct: 68 CSAGD 72 >gi|306828548|ref|ZP_07461743.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304429347|gb|EFM32432.1| transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 99 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 16/40 (40%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + + R L + LA+ AG+ + + +R Sbjct: 33 LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTP 72 >gi|296448802|ref|ZP_06890649.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] gi|296253688|gb|EFH00868.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] Length = 93 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + R L+ + LA + G ++ + + PST+++ + AT Sbjct: 30 EISAELVKARLRAGLSQAELATRMGTSQSAIARLESGQT-----LPSTKTLLRFAEATGS 84 Query: 68 TIC 70 Sbjct: 85 KFH 87 >gi|295112179|emb|CBL28929.1| Predicted transcriptional regulators [Synergistetes bacterium SGP1] Length = 155 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/147 (9%), Positives = 35/147 (23%), Gaps = 3/147 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + + + + L+ LA+ G+D + + + S + + + L T Sbjct: 2 KISDRVKTLRDLRGLSQGDLAQIIGVDVNTIWRWENGRSSPAR---SIQKLAQALDTTTA 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + D P + + + + P Sbjct: 59 YLLGETDNPKRYTSRLLELVGTDGNESSLVTSEHSTLGDSEAVARLIYERPDGERLELPA 118 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKG 154 + S+ + Sbjct: 119 TPEGYALFEKLVVAMMTDSLKKEFSDS 145 >gi|83590551|ref|YP_430560.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573465|gb|ABC20017.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 152 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 5/105 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + E + + + L+ + +A+ + ++ ++ R P E++ ++ + Sbjct: 2 KSLGERLAFLRKERALSQAEMAKLLNMGQSTIAMYEKN-----KRRPDPETLERLADFFD 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +I LL S + T + E G P Sbjct: 57 VSIDYLLGRADSRQKETYPLQDETQARTTMVLLEPGVRTLLADPI 101 >gi|29654094|ref|NP_819786.1| hypothetical protein CBU_0762 [Coxiella burnetii RSA 493] gi|212212773|ref|YP_002303709.1| hypothetical protein CbuG_1240 [Coxiella burnetii CbuG_Q212] gi|29541360|gb|AAO90300.1| hypothetical protein CBU_0762 [Coxiella burnetii RSA 493] gi|212011183|gb|ACJ18564.1| hypothetical protein CbuG_1240 [Coxiella burnetii CbuG_Q212] Length = 208 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 65/208 (31%), Gaps = 22/208 (10%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 L+ A+K+G+ T+ + +G +S+ + + A + Sbjct: 4 LSRREFAKKSGIANTTLQHWE----DGEKHTLPEKSVRRFIKALLNLGV-HCSYDWLMHG 58 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141 + +++ + PT EI+ + Sbjct: 59 KGPAPQYAGHVIFQEETTD--------LPTHGARQKNEDEEIKEELTLFLSRNKNTVHLV 110 Query: 142 TQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 D +M P + +G+++ + I+ G ++ + GD++ + ++ + Sbjct: 111 VSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVLVQGGDLLLRTILKGDVEGYYHLG 170 Query: 198 L-NC---CYPVDTVEMSDIEWIARILWA 221 N + ++ A ++WA Sbjct: 171 YTNPKTTASKPFLYNI-ELVNAAPVIWA 197 >gi|288904450|ref|YP_003429671.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306830483|ref|ZP_07463653.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977446|ref|YP_004287162.1| hypothetical protein SGGBAA2069_c02460 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731175|emb|CBI12723.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304427508|gb|EFM30610.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177374|emb|CBZ47418.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 208 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 53/211 (25%), Gaps = 23/211 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I+ + +++NL+ A + + + + +P E + KI ++ Sbjct: 2 NINELRKKNNLSQDEFANLFHVSRQTVSSWENGKS-----YPDVEMLIKISQHFGISVDD 56 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L+ T K K L+ NK N+ V Sbjct: 57 LVKNE--MHLPTSNKPKTKSRLWLIALPIFVLICVIAVGIWNKHNSQSVNFSMKDDKTYR 114 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR---LLIKPRTGDIVA------ 182 + T T K L + + G+ ++ Sbjct: 115 SNDTAQTSLTVAKGYF--TVPKAGKLEVKVNATTDNGNLHLTIVDNNNHHYYQIDGDDLK 172 Query: 183 ---KVLISRRGRSIDLMSLNCCYPVDTVEMS 210 K+ I + + Y V + Sbjct: 173 DSQKLYFKSGDYCIRITAD--AYTEKVVSLD 201 >gi|257439384|ref|ZP_05615139.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198259|gb|EEU96543.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 90 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I AI+ + LT LA K G + ++ + PS E + K+ A Sbjct: 29 EAICAAIES-RKAAGLTQKQLAEKMGTAQANISRFENGNSN-----PSLEFLQKMAACMG 82 Query: 67 ETIC 70 +T+ Sbjct: 83 KTLH 86 >gi|160901295|ref|YP_001566877.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366879|gb|ABX38492.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 470 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 17/188 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ H L+ LA GL P+ N+ ++ R + + K+ A I Q Sbjct: 10 LRKLRAEHGLSQIALAHALGLSPSYLNQLEQNQ-----RPLTVSVLLKLNRALGVDIQQF 64 Query: 73 LDLPF-------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR- 124 + + + +P L + + + + E Sbjct: 65 SEDEEARLVAGLREALAESPESIALPELQEVAAQMPALGRAVMALHRRHLEALERIESMA 124 Query: 125 --SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + D ++ A Q G+ D + Sbjct: 125 LRLGDDRSDMPVARTMPFEAVRDFFFAHQNYFDE--VDRAAQALAGEARADPGHLADWLV 182 Query: 183 KVLISRRG 190 + L R G Sbjct: 183 RRLQQRHG 190 >gi|296840682|ref|ZP_06863200.2| transcriptional regulator, Cro/CI family [Neisseria polysaccharea ATCC 43768] gi|296840230|gb|EFH24168.1| transcriptional regulator, Cro/CI family [Neisseria polysaccharea ATCC 43768] Length = 68 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +KI I + + NL+ A KA +D T ++ R S +++ KI+ A Sbjct: 4 EKIGARIRELRKAQNLSQEKFALKAEIDRTYLAGIEQG-----KRNLSMKNMEKIINALG 58 Query: 67 ETICQLL 73 T Q Sbjct: 59 TTFHQFF 65 >gi|282866669|ref|ZP_06275710.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558455|gb|EFB64016.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 521 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 8/107 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + ER L+ + +AR G+ P++ + + R P+ E+ K + +L Sbjct: 27 RELRERAQLSKAQVARALGVSPSTLSGWESG------RDPAGEARAKYAYLLDGLNAKLA 80 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + E P+ + + S G + V + Sbjct: 81 TEETPTETENTAELAEQPMASGAAAAAVTSTSSPE--VGQDEDEVEL 125 >gi|290954828|ref|YP_003486010.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260644354|emb|CBG67439.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 204 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + E+ L+ + LAR+AGL + + ++ P+ +++F Sbjct: 1 MVSAGNAVVARNVRLLREQRGLSLARLAREAGLAKQTLSNLEQGTGN-----PTVDTLFS 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A + +L+ ++ +++ G V+ +G N + Sbjct: 56 IATALGVPVTRLVAEREQ----VMTVQRGADVVWKEHEGLETRALDHVYGSGVIENYL 109 >gi|256004475|ref|ZP_05429455.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|255991616|gb|EEU01718.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] Length = 376 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 6/86 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I I +M LT +A G+ S +K + +P + + Sbjct: 1 MKM-KEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQS-----YPDITFLPQ 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86 + N +I +L+ + +K Sbjct: 55 LATLFNISIDELMGYEPQMSKEDIRK 80 >gi|229170243|ref|ZP_04297926.1| Transcriptional regulator, XRE [Bacillus cereus AH621] gi|228613239|gb|EEK70381.1| Transcriptional regulator, XRE [Bacillus cereus AH621] Length = 166 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I + ++ NLT LA K G+ + R+P + + K+ Sbjct: 26 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCF 77 >gi|281418200|ref|ZP_06249220.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|281409602|gb|EFB39860.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] Length = 376 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 6/86 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I I +M LT +A G+ S +K + +P + + Sbjct: 1 MKM-KEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQS-----YPDITFLPQ 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86 + N +I +L+ + +K Sbjct: 55 LATLFNISIDELMGYEPQMSKEDIRK 80 >gi|169344650|ref|ZP_02865615.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169297260|gb|EDS79372.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 365 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193 + + SM L++ +++I GD ++ + I ++ + Sbjct: 255 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSEHNEATC-KKIHKKKDKL 313 Query: 194 DLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222 +L + Y + + SDI I ++ S Sbjct: 314 ELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 343 Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 7/64 (10%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + ++ A++ + ++ + +R E P ++ K+ N Sbjct: 9 RLATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSE-----PPIYTLVKMSEVMNC 63 Query: 68 TICQ 71 +I + Sbjct: 64 SIDE 67 >gi|149275690|ref|ZP_01881835.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39] gi|149233118|gb|EDM38492.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39] Length = 71 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K + + I + ++ ++ LA+K G+ + +K + IE S ++++ Sbjct: 1 MKSKIVLQRIRILRKKSGMSQLALAKKLGMSQNALSKIELGEIE-----LSLSHLYQLAD 55 Query: 64 ATNETICQLLDLPF 77 + L+ + Sbjct: 56 LLEIDLFDLVRIDE 69 >gi|126724437|ref|ZP_01740280.1| Transcriptional Regulator, XRE family protein [Rhodobacterales bacterium HTCC2150] gi|126705601|gb|EBA04691.1| Transcriptional Regulator, XRE family protein [Rhodobacterales bacterium HTCC2150] Length = 199 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I ++ E L+ L+ ++G+ + +K + ++ R S S+ L Sbjct: 6 ENIAASLKSARENKGLSQRELSARSGVPQSHISKIESNAVD--LRLSSLASLAHALD 60 >gi|323142578|ref|ZP_08077394.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413011|gb|EFY03914.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 101 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + I + + H LT LA + G+ + + + Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNR 75 >gi|302554082|ref|ZP_07306424.1| signal peptidase [Streptomyces viridochromogenes DSM 40736] gi|302471700|gb|EFL34793.1| signal peptidase [Streptomyces viridochromogenes DSM 40736] Length = 145 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198 + SM+P GD L+++ ++ GD ++++ +V K + RR ++ Sbjct: 22 EVTGPSMVPTLYHGDRLLVHYGARIKPGDVIVLRHPFQQDLLVVKRIAERRETGWWVLGD 81 Query: 199 NCCYP-----VDTVEMSDIEWIARI 218 N Y V D+ + R+ Sbjct: 82 N-AYAGGDSTDYGVVPDDL-VLGRV 104 >gi|312198778|ref|YP_004018839.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311230114|gb|ADP82969.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 200 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 39/139 (28%), Gaps = 7/139 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I +I + + LT LA KA L ++ +R PS S+ ++ A Sbjct: 18 RIGRSIRVLRRQQGLTLVQLATKAELSHPFLSQLERGLAR-----PSMASLHRLAQALGT 72 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNT-VGVPEIRS 125 T L+ + DG + + G + V + Sbjct: 73 TQPALMSMAADDGAALSADGRVSLVTAGSGVPVDNPGGVARSLVAGARAIYPVLFDGAPA 132 Query: 126 PHNGIYAIQTQDTRHKTQD 144 Y + H Sbjct: 133 EFGQAYTHPGDEFVHVIAG 151 >gi|159039604|ref|YP_001538857.1| putative phage repressor [Salinispora arenicola CNS-205] gi|157918439|gb|ABV99866.1| putative phage repressor [Salinispora arenicola CNS-205] Length = 108 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 7/86 (8%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL--LIKPRTGDIVAKVLISRRGRSIDL 195 SM+P R GD++++ + V GD + + + R +V K ++ L Sbjct: 10 AVLVSGPSMVPTLRHGDVVLVRRGDRGVRVGDVVIAVFRSRPDLLVVKRAVAPAAGGWWL 69 Query: 196 MSLNC--CYPVDTVEMSDIEWIARIL 219 N ++DI R++ Sbjct: 70 TGDNPLVSDDSRAYGVADIR--GRVV 93 >gi|125623644|ref|YP_001032127.1| hypothetical protein llmg_0793 [Lactococcus lactis subsp. cremoris MG1363] gi|124492452|emb|CAL97394.1| CI [Lactococcus lactis subsp. cremoris MG1363] gi|300070411|gb|ADJ59811.1| hypothetical protein LLNZ_04110 [Lactococcus lactis subsp. cremoris NZ9000] Length = 165 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 16/39 (41%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 E + + NL+ LA K G ++ ++ + + Sbjct: 8 ERLKEARKAANLSQQALADKIGRTKSTISRWESGERNPK 46 >gi|296533524|ref|ZP_06896097.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296266156|gb|EFH12208.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 208 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 S +++ E + + +R L+ L R+ GL ++ +R R S+ Sbjct: 24 SDRRLGECVRLLRQRLGLSIQELGRRTGLSIGMISQLERGLATPSVRTLRLLSLA 78 >gi|312141162|ref|YP_004008498.1| transcriptional regulator [Rhodococcus equi 103S] gi|325674016|ref|ZP_08153706.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|311890501|emb|CBH49819.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555281|gb|EGD24953.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 469 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ L+ + LA+ + + N+ + R + + +I Sbjct: 6 VGARLRQLRTERGLSQAALAKTLDISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ + P Sbjct: 61 TTFFSSQDDTRLIAELREVALDKDMGIDADAQEIAEMVSSHP 102 >gi|227364856|ref|ZP_03848903.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|325682519|ref|ZP_08162036.1| LexA repressor [Lactobacillus reuteri MM4-1A] gi|227070119|gb|EEI08495.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|324978358|gb|EGC15308.1| LexA repressor [Lactobacillus reuteri MM4-1A] Length = 86 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 1/59 (1%) Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLI 186 + + + + SM P G I+ + V G+ + K + Sbjct: 27 KRFFPKGNLFALRCKGKSMEPTIHDGSIVTIREQPTVEDGEIAAALVDGDNEATLKRVK 85 >gi|188534357|ref|YP_001908154.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188029399|emb|CAO97276.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 187 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/162 (9%), Positives = 47/162 (29%), Gaps = 10/162 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58 + K++ + + + + + LA G+ S ++ +R + ++ Sbjct: 6 TEKRLAQRLCDLRREKSWSLETLAELTGISRASLSRIERAESSPTATLLNRLCNAYGLTM 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++L+ QLL + + + + G + + Sbjct: 66 SRLLSDVERDGIQLLRPESQSLWRDAQNGYQRRSVSPTAAAFHAELVEARLDAGARIDY- 124 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 +P + I+ + + +GD L + Sbjct: 125 DIPPLAGLEQHIWMLGG---VLEFAMDDRQWRLEQGDCLRFH 163 >gi|118619637|ref|YP_907969.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571747|gb|ABL06498.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 138 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 10/124 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E +++ LA ++G+ ++ +R R PS + + +I A Sbjct: 20 DIGSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLAQIAKALRV 74 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-----TGNKWNTVGVPE 122 + L + + +++ + + ++ P Sbjct: 75 SAEVLYVRAGILEPSETSQVRDVIITDTAITERQKQILLDIYASFTQQNEAVCEEYSSPS 134 Query: 123 IRSP 126 Sbjct: 135 EIDD 138 >gi|84502726|ref|ZP_01000845.1| DNA binding protein, putative [Oceanicola batsensis HTCC2597] gi|84389121|gb|EAQ01919.1| DNA binding protein, putative [Oceanicola batsensis HTCC2597] Length = 288 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 4/114 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + + ++ S LAR G+D ++ ++ R P+ + + + AA Sbjct: 12 EQFRMRLSQAMQNEGMSQSALARAVGVDRSTISQLLTGSG---ARLPNAQVVGECAAALG 68 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119 + LL + + L P + + G K V Sbjct: 69 VSSDWLLSISQHPETAANLLAASLSLTAAPRALVDEQIFAWHREAAGYKIRHVP 122 >gi|317503022|ref|ZP_07961104.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315665859|gb|EFV05444.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 199 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 39/216 (18%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + H + + LA + G+ P N + + +I + I + Sbjct: 6 VRKTLQEHCINLAWLAEQLGISPQGLN------SRLNAHLFKSSYLQEITNILQKDIFGI 59 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 P + I + V +P IY Sbjct: 60 GTKPNMQPILNIRVRDNITKELSTTNFP-------------VIEYVSIPAFAGCLGFIY- 105 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIVAKVLISRRGR 191 P Y GDI+ + + G + LI + V + + Sbjct: 106 ----------YGKDAAPKYEAGDIIFILPETEAITPGRKYLIITDSDRFVRFAYEADKKG 155 Query: 192 SIDLMSLNCC--------YPVDTVEMSDIEWIARIL 219 + L ++N YP ++ SDI +++ Sbjct: 156 RVRLSAINPATDTEGARIYPDTEIKTSDILHAYKVV 191 >gi|300115617|ref|YP_003762191.1| XRE family transcriptional regulator [Nitrosococcus watsoni C-113] gi|299541559|gb|ADJ29870.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 76 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + LT + LA+KA +D + +K +R E + + KI A + + Sbjct: 3 VGKNIKGLRIAAGLTQTQLAKKAHIDQSGLSKIERGENE----SVTLPMLRKIAKALDCS 58 >gi|297538223|ref|YP_003673992.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297257570|gb|ADI29415.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 184 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + RH L+ LA+KAG+ + + + PS ++ +ILA Sbjct: 4 DLGARLKIVRLRHQLSQRALAKKAGVANATISLIESGNT-----SPSVSALKRILAGIPM 58 Query: 68 TICQLLDLPFSDGRTT 83 T+ + + ++ Sbjct: 59 TLAEFFSDELPNMQSE 74 >gi|293378126|ref|ZP_06624295.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292642990|gb|EFF61131.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 180 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 15/139 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56 Query: 68 TICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 T + D +E L + + + + Sbjct: 57 TPEEFFHQEAANLQVVYSKEDHTVYFDEENGYELEWLVVDSNEKEMEPVLLTFEGAGEYK 116 Query: 119 GVPEIRSPHNGIYAIQTQD 137 S I+ ++ + Sbjct: 117 TFEPSLSE-TFIFVLEGEL 134 >gi|253681078|ref|ZP_04861881.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253562927|gb|EES92373.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 221 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 58/213 (27%), Gaps = 5/213 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---WPSTESIFKILAA 64 +I I + N+T LA+K G+ + + S + Sbjct: 3 RIGSKIREARLKSNITEKQLAKKIGVSEKFIKEVESGKKVINESVMGKISKVLGKDLNDV 62 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 T + + S + E + + +P I Sbjct: 63 TMSFEAEFYEEEKSQNTNKKTVETINDVWNDALGSVLKPVPVYGYDMARIIEMRKLPIIG 122 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + G +A D + KGDI ++ + G+ + Sbjct: 123 NKVEG-HAKDKVLFLKVEDDDMIGSRIAKGDIAFGYITHEIENNALC-LIEYNGERHIRH 180 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217 + + L+S +TV + DI+ + R Sbjct: 181 IKKLDSNKLLLISNGNSLRTETVTVRDIKVLVR 213 >gi|253681413|ref|ZP_04862210.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253561125|gb|EES90577.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 179 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + ++ LT LA + L ++ +R PS ++ IL Sbjct: 2 KIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLT-----SPSIATLVDILECLGT 56 Query: 68 TICQLLDLPF 77 + + Sbjct: 57 NLKDFFNNDE 66 >gi|239942360|ref|ZP_04694297.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239988825|ref|ZP_04709489.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 167 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA G+ ++ +R R PS + + + Sbjct: 1 MASLNVGNLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERG-----LRKPSADVLQQ 55 Query: 61 ILAATNET 68 + A + Sbjct: 56 VAKALRIS 63 >gi|228474760|ref|ZP_04059491.1| helix-turn-helix domain protein [Staphylococcus hominis SK119] gi|228271423|gb|EEK12791.1| helix-turn-helix domain protein [Staphylococcus hominis SK119] Length = 200 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 2/72 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ I + + N+T S L+ K G + + + + E K Sbjct: 1 MPENKPSQLGLIIKNIRKSKNMTQSKLSEKTGFSQNTISNHENGRRSIGEKE--VEKYAK 58 Query: 61 ILAATNETICQL 72 L T ++I Sbjct: 59 ALEVTKKSIYNH 70 >gi|188584169|ref|YP_001927614.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179347667|gb|ACB83079.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 209 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 46/145 (31%), Gaps = 10/145 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60 ++ + I R+ + +NL+ S LA ++G+ + ++ +R R SI + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + E + + ++ + + ++ + + + G + Sbjct: 86 LATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADPGGVLESDAH 145 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145 ++ + Sbjct: 146 QRGSVE---SLSVLEGSFEVEVAGE 167 >gi|160875153|ref|YP_001554469.1| peptidase S24/S26 domain-containing protein [Shewanella baltica OS195] gi|160860675|gb|ABX49209.1| peptidase S24 and S26 domain protein [Shewanella baltica OS195] gi|315267346|gb|ADT94199.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica OS678] Length = 135 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 6/99 (6%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 S + + + SM + GDILI++ GD ++ G+ V Sbjct: 26 GLSLDELLVVHPSATFIGVAKGDSMQGVGIFYGDILIVDRQETARHGDVIVANFN-GEFV 84 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 K+L L+S N + + + + ++ Sbjct: 85 CKILDKT---HRMLLSSNEQHQPQPIHDYDNFTIEGVVI 120 >gi|297162135|gb|ADI11847.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 101 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + + LAR+AG+ + + + PST ++ ++ A + Sbjct: 37 EIGRTVYQRRTELGWSQTELARRAGMTQPAIARLETSLT-----LPSTRTLLRVATALGQ 91 Query: 68 TIC 70 + Sbjct: 92 PLH 94 >gi|261758784|ref|ZP_06002493.1| transcriptional regulator [Brucella sp. F5/99] gi|261738768|gb|EEY26764.1| transcriptional regulator [Brucella sp. F5/99] Length = 340 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 4 FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI+ I R+ LT + +A G+ P+ N +R R + + + K+ Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55 Query: 62 L 62 Sbjct: 56 A 56 >gi|229589612|ref|YP_002871731.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229361478|emb|CAY48354.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 65 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 2/58 (3%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 ++ + + LA + G+ + N + + P I K+ E I + Sbjct: 6 RQLRSELGWSQADLAERLGVSRQTINAIETGRYD--PSLPLAFKIAKVFERPIEGIFE 61 >gi|227874017|ref|ZP_03992229.1| DNA-binding protein [Oribacterium sinus F0268] gi|227840133|gb|EEJ50551.1| DNA-binding protein [Oribacterium sinus F0268] Length = 203 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 KI + I + +T + LA K G+ + +K + Sbjct: 1 MDQIKIGKFIASCRKEEGMTQAELAEKLGISDRAVSKWETGKS 43 >gi|226361258|ref|YP_002779036.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226239743|dbj|BAH50091.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 470 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ L+ + LA+ + + N+ + R + + +I Sbjct: 6 VGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ + P Sbjct: 61 TTFFSSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHP 102 >gi|111019118|ref|YP_702090.1| DNA binding protein [Rhodococcus jostii RHA1] gi|110818648|gb|ABG93932.1| possible DNA binding protein [Rhodococcus jostii RHA1] Length = 470 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ L+ + LA+ + + N+ + R + + +I Sbjct: 6 VGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ + P Sbjct: 61 TTFFSSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHP 102 >gi|83859577|ref|ZP_00953097.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] gi|83851936|gb|EAP89790.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] Length = 75 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 6/74 (8%) Query: 3 SFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +I I + +T + LAR+ G+ + ++ PS E F+I Sbjct: 1 MAKSTQIKNRIRELRFHAGEMTQAELARRIGVTRQTVLAIEQGKY-----SPSLEVAFQI 55 Query: 62 LAATNETICQLLDL 75 + + + Sbjct: 56 AEVFKTPLTDVFEY 69 >gi|322382691|ref|ZP_08056546.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153337|gb|EFX45770.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 110 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K++ I ++ E LT LA G+ T+ + + P + Sbjct: 1 MNEKEKKQMGLRIKKLREEKGLTQDELAEMLGMKRTNIANYEAGRVI-----PPGNVLRD 55 Query: 61 ILAATNET 68 + + Sbjct: 56 LADIFAVS 63 >gi|313158570|gb|EFR57964.1| transcriptional regulator, y4mF family [Alistipes sp. HGB5] Length = 70 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ AI + +T LA AG+ + K +R P+ E + KIL Sbjct: 5 DKVGNAIKERRKILKITQRTLAELAGVGINTLTKIERGEGN-----PTIEVLEKILDTLG 59 >gi|295107458|emb|CBL05001.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae 7-10-1-b] Length = 79 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I AI NLT LA + G+ ++F + + P+ +++ ++ Sbjct: 18 DIISAITMARAEQNLTQRELAERCGMRQSAFARLESGNAN-----PTLKTLQQVAKGLG 71 >gi|291560882|emb|CBL39682.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 253 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S++K + + + NLT LA K + + +K +R P+ + Sbjct: 1 MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 55 Query: 61 ILAATNETICQ 71 I + T+ + Sbjct: 56 IADILDVTVTE 66 >gi|225387206|ref|ZP_03756970.1| hypothetical protein CLOSTASPAR_00958 [Clostridium asparagiforme DSM 15981] gi|225046685|gb|EEG56931.1| hypothetical protein CLOSTASPAR_00958 [Clostridium asparagiforme DSM 15981] Length = 88 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S + A+ NLT LA + G+D +K + R PS + ++ Sbjct: 20 SELDVIRALVEARISQNLTQKELAARTGIDQADISKLENGT-----RNPSLNLLKRLADG 74 Query: 65 TNE 67 Sbjct: 75 MGM 77 >gi|162448051|ref|YP_001621183.1| XRE family transcriptional regulator [Acholeplasma laidlawii PG-8A] gi|161986158|gb|ABX81807.1| transcriptional regulator, XRE family [Acholeplasma laidlawii PG-8A] Length = 182 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 9/137 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + +NLT LA + L ++ + PS +++F +L Sbjct: 3 DIGKKIRALRLGNNLTQEELANRLELTKGYISQLENNLT-----SPSIQTLFSLLEVLGV 57 Query: 68 TICQLLDLPFSDGRT---TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + P + T++ E + S ++ + + +P + Sbjct: 58 ETHEFFSKPEGEDAKIVFTKEDFYEKENPDLGSTISWIVPNALKYEMEPIIIEI-MPGGQ 116 Query: 125 SPHNGIYAIQTQDTRHK 141 S + + + + Sbjct: 117 STIDDSHPGEEFGYVLE 133 >gi|160932607|ref|ZP_02079997.1| hypothetical protein CLOLEP_01449 [Clostridium leptum DSM 753] gi|156868566|gb|EDO61938.1| hypothetical protein CLOLEP_01449 [Clostridium leptum DSM 753] Length = 83 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + AI ++ E+ ++ ++ AG+ T + +R R P+ E+ F++ Sbjct: 1 MLNAETVGAAIRQVREKKGISQEVVSSFAGIGRTHLSAIERGQ-----RKPTLETFFRLS 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89 A L+ + + K++E Sbjct: 56 EALGMAASDLMREIEKEIQKENDKQEE 82 >gi|190015751|ref|YP_001967756.1| probable transcriptional regulator [Clostridium perfringens] gi|86450173|gb|ABC96282.1| probable transcriptional regulator [Clostridium perfringens] Length = 344 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 63/217 (29%), Gaps = 13/217 (5%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 ++ +++K FN+ KR N + + K T + + Sbjct: 110 KLRTERMFNELQMSKK--RTERMFNELKRTRNRAENDIKLFQELSKEFTNTLDKEHETDL 167 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNGIY 131 + + F S + F + V + Sbjct: 168 SDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISKSI 227 Query: 132 AIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLIS 187 A+ + + + SM L++ +++I GD ++ + I Sbjct: 228 ALPSNYKDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC-KKIH 286 Query: 188 RRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222 ++ ++L + Y + + SDI I ++ S Sbjct: 287 KKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 322 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 2/82 (2%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I +++ L+ + LA K G+ T+ +R +E + K++ + +++ Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYT--LVQLSKLMNRSIDSLLG 69 Query: 72 LLDLPFSDGRTTEKKEKEIPLL 93 L + + + Sbjct: 70 LNHPNETTNDLNNSDLSKKIFI 91 >gi|297160908|gb|ADI10620.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 387 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 M +H I + ++ +R L+ LA +G+ + K ++ ++ Sbjct: 1 MPEETH--IGARLRKIRKRRGLSQRDLAVASGVSLSLIRKLEQGTLDDTR 48 >gi|294648560|ref|ZP_06726027.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292825548|gb|EFF84284.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 208 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 46/182 (25%), Gaps = 19/182 (10%) Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW- 115 S+ +++ + + + E EK P S P G + Sbjct: 16 SLQELMGPEGKPSPTINTVLEQIAVQNELVEKLGLTAVLPKSKVSIPVSLERIPAGPAFS 75 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + + SML + D +I++ +I+ D ++ Sbjct: 76 IKDEQDKALDLNEFLIHNPISTFIAYVDSESMLDAGFEINDPIIVDRSIEAKHYDIVIAL 135 Query: 175 PRTGDIVAKVL-----------ISRRGRS------IDLMSLNCCYPVDTVEMSDIEWIAR 217 K L G + L + N Y S I Sbjct: 136 IDNSASTIKRLMITSKMSKSEIKEIFGDEDYPLPDLWLKAENPRYNHIIPNDSQTISIWG 195 Query: 218 IL 219 ++ Sbjct: 196 VV 197 >gi|116249086|ref|YP_764927.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253736|emb|CAK12129.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] Length = 182 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + L+ LA++ G+ ++ + + PS ++ +IL Sbjct: 4 DIGSRLRYLRIANKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58 Query: 68 TICQLLDLPFSDGRTTE 84 + + R Sbjct: 59 GLAEFFAFEPERPRKAF 75 >gi|134298755|ref|YP_001112251.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051455|gb|ABO49426.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 77 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ E N + L + + +S ++ ++ R P E++ K+ A N + Sbjct: 6 IGENVIKLREAKNWSQQDLEEASKVPQSSISRIEKGL----LRNPGVETVRKLATALNVS 61 Query: 69 ICQ 71 + + Sbjct: 62 VAE 64 >gi|303231632|ref|ZP_07318355.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] gi|302513581|gb|EFL55600.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] Length = 90 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E I + ++T + L+ G+ + +K + PS +++ KI A Sbjct: 29 QIIENIVKARIEAHMTQTQLSEITGITQSDISKIENGNGN-----PSVKTLKKIAHAFG 82 >gi|295095877|emb|CBK84967.1| Predicted transcriptional regulators [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 175 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 9/129 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H + + + + + S LA + G+ + +R P+ +++K Sbjct: 1 MDITQH--LATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNES-----SPTVSTLWK 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTV 118 I N + + +++ + + L+ S G + Sbjct: 54 IATGLNVPFSAFITPESEPQAVFDPQQQAMVVKPLFPWDEQLKFDHFSITLSPGALSEST 113 Query: 119 GVPEIRSPH 127 H Sbjct: 114 PHEAGVIEH 122 >gi|325680471|ref|ZP_08160020.1| nucleotide sugar dehydrogenase [Ruminococcus albus 8] gi|324107840|gb|EGC02107.1| nucleotide sugar dehydrogenase [Ruminococcus albus 8] Length = 501 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 9/179 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E ++ + +T + LA K G++ ++ + PS E + Sbjct: 1 MKKLSIQLLAETVEGRRKSLKITQAQLAEKTGINRGLLSRLESQDFT-----PSIEQLQA 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A + + + +G G + + N V + Sbjct: 56 LGEALGFEPTDMFV---EMSGVGKIAVDRSYRIAVAGTGYVGLSLAVLLAQHNDVTAVDI 112 Query: 121 PEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 + Y D + D + ++ A D ++I T Sbjct: 113 IPEKVEKLNKYISPIQDDYIERYLDEAKKGRRELHLTATVDGASAYKDADFIIIAAPTN 171 >gi|119488949|ref|ZP_01621884.1| hypothetical protein L8106_19346 [Lyngbya sp. PCC 8106] gi|119454905|gb|EAW36048.1| hypothetical protein L8106_19346 [Lyngbya sp. PCC 8106] Length = 79 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 1 MTSFSH-KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + I + + ER L+ LA G+ + N+ +R + + +I Sbjct: 1 MPVTTPVSDIPNLVRTLRERLGLSQEKLAASLGVSFQTVNRWERGRA--KPSQLALNAIE 58 Query: 60 KILAATN 66 + LA Sbjct: 59 QKLAEMG 65 >gi|15922405|ref|NP_378074.1| transcriptional regulator [Sulfolobus tokodaii str. 7] gi|15623194|dbj|BAB67183.1| 515aa long hypothetical transcriptional regulator [Sulfolobus tokodaii str. 7] Length = 515 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + E+ ++ + LA+ AG+ ++ + + I P+ +++ I A T Sbjct: 5 IGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKI-----SPNISTLWSIANALGVT 59 Query: 69 ICQLLDLP 76 +L+ Sbjct: 60 FGELITYD 67 >gi|23006264|ref|ZP_00048663.1| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase [Magnetospirillum magnetotacticum MS-1] Length = 216 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ I + LT + LA + G ++ ++ ++ S E + +I Sbjct: 11 QVGALIRGARQNRGLTQTQLAERLGTSQSAVHRIEQGSQN-----LSLEMLNRI 59 >gi|312164184|gb|ADQ38323.1| transcriptional regulator [Azospirillum brasilense] Length = 75 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + ++ E H L+ LA++AG+ + + ++ PS S+ K+L Sbjct: 9 NVGARLKQVREAHALSQRQLAQRAGVTNGTISLIEQNRC-----SPSVSSLRKVLQGIPM 63 Query: 68 TICQLLDLPF 77 T+ + Sbjct: 64 TLAEFFSSDD 73 >gi|309777434|ref|ZP_07672392.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914830|gb|EFP60612.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 183 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ + LT +ARK ++ T+ ++ +R P E + ++ + Sbjct: 3 NRIRQVRKAKKLTQQDIARKLNINQTAISQWERGSTV-----PKNEKLIQLCEILETS 55 >gi|293115444|ref|ZP_05791516.2| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292809724|gb|EFF68929.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 202 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 5/110 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI I +R T L+ K G+ + +K +R +P + + Sbjct: 1 MMDQIKIGGFIAEERKRKGYTQKILSEKLGISDKTISKWERGNG-----FPEVSLLIPLC 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + + T+ +LL KK +E + + G Sbjct: 56 SELDITVNELLSGERVSEEQYRKKAEENMVNLVKEAQENKKKIILSVMVG 105 >gi|260662345|ref|ZP_05863240.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260553036|gb|EEX25979.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 188 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + I + I R+ + + T A K + +K +R PST+S+ I Sbjct: 26 TGQIIGQNIRRLRKDNGYTQKQFAEKLETIEQTVSKIERGVF-----SPSTDSLMNICTI 80 Query: 65 TNETICQLL 73 T L+ Sbjct: 81 FGVTPNDLM 89 >gi|302540449|ref|ZP_07292791.1| cro/CI family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458067|gb|EFL21160.1| cro/CI family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 196 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 16/139 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS + K+ A Sbjct: 15 QSLARNLKRWRNERGYTLDALAARAGVSRGMIIQIEQARTN-----PSVGTTVKLADALG 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSGVFPTGNKW 115 +I LLD E+ + + + G+ Sbjct: 70 VSITTLLDYEQEARVRLVPPEQAVRMWSTEAGSHTVLLVGTEARGPLELWDWRLMPGDGS 129 Query: 116 NTVGVPEIRSPHNGIYAIQ 134 ++ P + A + Sbjct: 130 SSDPHPAGTFELLRVTAGE 148 >gi|229496507|ref|ZP_04390221.1| putative transcriptional regulator [Porphyromonas endodontalis ATCC 35406] gi|229316404|gb|EEN82323.1| putative transcriptional regulator [Porphyromonas endodontalis ATCC 35406] Length = 180 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 5/115 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + +I + + M E +T A +AG+ P +F+++ + PS ++ KI Sbjct: 20 TIDQITQRLRYMMESLGMTAKTFAEQAGIPPATFSQTLENRNK-----PSLSTLLKIANG 74 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 E + + R K +E L W Sbjct: 75 FPEWNPTWIIFGQGEERMEISKNREGLFLENSFGEGVDTSVYQKNTNLKSWENSE 129 >gi|291288546|ref|YP_003505362.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885706|gb|ADD69406.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 79 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + +AI LT S LA K GL + + + + Sbjct: 11 LGQAIKAARLEAKLTQSQLAEKTGLRQGTISDIENGTQRAK 51 >gi|322376588|ref|ZP_08051081.1| putative transcriptional regulator [Streptococcus sp. M334] gi|321282395|gb|EFX59402.1| putative transcriptional regulator [Streptococcus sp. M334] Length = 158 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 6/134 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHK 141 + Y I T + Sbjct: 117 DLSYLIHTNIYLVE 130 >gi|312130063|ref|YP_003997403.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311906609|gb|ADQ17050.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 255 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 5/128 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + R LT LA G++ + + P + + ++ + + Sbjct: 4 VNENIKVLRNRMGLTQEKLAALLGINRKAVGSYEENRAT-----PPLDKLNRLASLFGVS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + QL+ FS +++ + + W +P I + Sbjct: 59 MDQLIHHRFSTESPLFEEQAPEVPTEVVKEAPALIVEKKKPFSRTAWIDEAIPYISYKYF 118 Query: 129 GIYAIQTQ 136 Y + Sbjct: 119 DKYILDED 126 >gi|262376108|ref|ZP_06069339.1| predicted protein [Acinetobacter lwoffii SH145] gi|262309202|gb|EEY90334.1| predicted protein [Acinetobacter lwoffii SH145] Length = 107 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 5/83 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ LT LA K+G+ TS + + +R PS E+ +K++ N + Sbjct: 12 ARLKEIRKQRKLTQQELAEKSGIPSTSISHIEAG-----SRKPSLENFYKLVIVLNVSAD 66 Query: 71 QLLDLPFSDGRTTEKKEKEIPLL 93 LL + Sbjct: 67 YLLGRTERSSDVGNDPIAKSIQE 89 >gi|253583791|ref|ZP_04860989.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251834363|gb|EES62926.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 168 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 20/39 (51%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 K++ I ++ +++ ++ LA+ G+ S +K + Sbjct: 2 KLFVKIQQLRKQNGMSQEKLAQLLGVSKQSVSKWESGQS 40 >gi|300768439|ref|ZP_07078339.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493957|gb|EFK29125.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 133 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 11 EAIDRMAE-RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 E + + + LT LA + G+ T+ ++ R P E++ KI Sbjct: 17 ERLKELRKKEAGLTQERLAMQLGMAKTTLASYEQG-----KRQPDLETLSKIADRF 67 >gi|255655987|ref|ZP_05401396.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|296450586|ref|ZP_06892339.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296879295|ref|ZP_06903290.1| probable phage regulatory protein [Clostridium difficile NAP07] gi|296260430|gb|EFH07272.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296429838|gb|EFH15690.1| probable phage regulatory protein [Clostridium difficile NAP07] Length = 123 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + I + + ++ LA K G+ S ++ + R P +E I ++ A Sbjct: 2 ESLGDRIANLRKELDINQKELATKVGITEASLSRYENN-----LREPKSEIIVRLAKALE 56 Query: 67 ET 68 + Sbjct: 57 TS 58 >gi|167839985|ref|ZP_02466669.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 95 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + AI ++ E + LA AGL+ + + +R S ++ K Sbjct: 1 MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54 Query: 61 ILAATN 66 + A Sbjct: 55 LARAFG 60 >gi|317054659|ref|YP_004119726.1| UmuD [Escherichia coli] gi|119434067|gb|ABL75134.1| UmuD-like protein [Acinetobacter baumannii] gi|284433188|gb|ADB84927.1| UmuD [Escherichia coli] Length = 142 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 4/102 (3%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + P I + + S++ GD++ ++ + + G +L Sbjct: 33 DLEDEIDPIAWIVPHPSATFWWRVSGDSLVDEGIHDGDLIAVDRSGKARVGRIVLAVVD- 91 Query: 178 GDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIARI 218 G I K L R G+ +D S Y + E I Sbjct: 92 GSITLKKLAKRDGQYWLDPKSKGNNYQPIRIT-DQTEIWGVI 132 >gi|139439103|ref|ZP_01772555.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC 25986] gi|133775450|gb|EBA39270.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC 25986] Length = 127 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 5/76 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + + + + LA +D + +R P E ++K + L Sbjct: 5 LKQARKENGYSQADLADALNVDIKTVGNWERGKT-----LPDIEQLWKCAKILHTDPNDL 59 Query: 73 LDLPFSDGRTTEKKEK 88 L Sbjct: 60 LGWYEEHPEDRPTVPA 75 >gi|28377505|ref|NP_784397.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] gi|28270337|emb|CAD63238.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] Length = 120 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 11 EAIDRMAE-RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 E + + + LT LA + G+ T+ ++ R P E++ KI Sbjct: 4 ERLKELRKREAGLTQERLAMQLGMAKTTLASYEQG-----KRQPDLETLSKIADRF 54 >gi|332687060|ref|YP_004456834.1| MerR family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371069|dbj|BAK22025.1| transcriptional regulator, MerR family, near polyamine transporter [Melissococcus plutonius ATCC 35311] Length = 180 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 5/93 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + + +LT L + L ++ +R PS E+ F IL Sbjct: 2 EIGDRLRNLRIQRDLTQEELGERTDLTKGYISQLERNLS-----SPSMETFFTILEVLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + + + + + + + Sbjct: 57 SPEEFFNEQTMEQKIVYQDKDNTHYYDEENGYE 89 >gi|331090730|ref|ZP_08339577.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399838|gb|EGG79497.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium 2_1_46FAA] Length = 156 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 H+ I + I + LT LA G+ S ++ + Sbjct: 1 MNQHE-IGDFISCCRKEKGLTQVELAEMLGVSDKSISRWENAKT 43 >gi|331268528|ref|YP_004395020.1| DNA-binding protein [Clostridium botulinum BKT015925] gi|329125078|gb|AEB75023.1| DNA-binding protein, putative [Clostridium botulinum BKT015925] Length = 185 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 12/139 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + ++ LT LA + L ++ +R PS ++ IL Sbjct: 8 KIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLT-----SPSIATLVDILECLGT 62 Query: 68 TICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + + + + + + + T Sbjct: 63 NLKDFFNDEEEEKIVFSKEDIFESEDSELNYKVQWVIPNAQKNMMEPILLTLESNGQYKN 122 Query: 121 PEIRSPHNGIYAIQTQDTR 139 E Y + Sbjct: 123 DEPHEGEEFGYVLAGTIYI 141 >gi|308067920|ref|YP_003869525.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857199|gb|ADM68987.1| Transcriptional regulator [Paenibacillus polymyxa E681] Length = 122 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + E L LA+ G+ + + ++ R P E + K+ TI Sbjct: 4 GSRIAELREHKGLKQEELAQSLGITRAALSHYEKN-----RRKPDFEILTKLADIFGVTI 58 Query: 70 CQLLDLPFSDGRTTEKKEKEI 90 L+ + +E Sbjct: 59 DYLVGRTSHPAAILDSDVREF 79 >gi|291531329|emb|CBK96914.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 168 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 7/99 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +KI E + + + LT LA + + ++ + P + + ++ Sbjct: 1 MNQQKIGEFLKYLRKNKGLTQEQLAEHFCVSSRTVSRWENGNN-----MPDIDILIELAD 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 I + + K+ + ++ + G Sbjct: 56 FYEVDIRE--LIDGERKSENMDKKTKETVIKAAEYMNMG 92 >gi|291299515|ref|YP_003510793.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568735|gb|ADD41700.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 388 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 6/132 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + LA + G++ ++ + + E + W K+ A T Sbjct: 6 SRLAQRRKAAGFSQEKLAERLGVERSTVVRWETAETEPQP-WLRL----KLAQALGITTD 60 Query: 71 QLLD-LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L L + T ++ +L P S + + Sbjct: 61 DLHVLLDDVEYVTAGPSDRMDYVLEHPASVDLVAVAYLHERVRQLDESYDRSPSTALLGP 120 Query: 130 IYAIQTQDTRHK 141 I Q + Sbjct: 121 AGQIHGQVAFLR 132 >gi|228945433|ref|ZP_04107787.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814236|gb|EEM60503.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 181 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|289582562|ref|YP_003481028.1| XRE family transcriptional regulator [Natrialba magadii ATCC 43099] gi|289532115|gb|ADD06466.1| transcriptional regulator, XRE family [Natrialba magadii ATCC 43099] Length = 79 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + E L+ LA + + N +R + PS E FK+ A I +L Sbjct: 5 LTERREEAGLSQGDLAEAVDVTRQTINAIERERYD-----PSLELAFKLAAFFECHIEEL 59 Query: 73 LDLP 76 + Sbjct: 60 FEPD 63 >gi|330447342|ref|ZP_08310991.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491533|dbj|GAA05488.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 213 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 54/215 (25%), Gaps = 12/215 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I R+A+ ++ L L + ++ R + KI N + Sbjct: 4 LERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRE-----LEKIAETLNTS- 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + D T L F ++V V R+ Sbjct: 58 IGYILTGQVDTGTQATTTISTELDNAATCTYIPVIHRKDFSAYTDGSSVEVISKRAIPQ- 116 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + ++ G + + + R + + Sbjct: 117 -HLEREECLGLLIDNENIAQCAPVGSYALATKKAEYRPKQPVFASVRGSEPDFYHMTQLA 175 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221 + S +P V + + I+ WA Sbjct: 176 DGVVFSTSQ-PDFPNLFVNNDEFQIHGYIIQSDWA 209 >gi|325524150|gb|EGD02302.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 95 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + +A+ L+ + +A + G + + +R G+ PS E++ K AA Sbjct: 31 LLDAMLAARRAAGLSQADVAERMGTKAPAVTRLERSLATGQ-HSPSIETLRKYAAACG 87 >gi|302542605|ref|ZP_07294947.1| signal peptidase [Streptomyces hygroscopicus ATCC 53653] gi|302460223|gb|EFL23316.1| signal peptidase [Streptomyces himastatinicus ATCC 53653] Length = 144 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198 + + SM P GD L++ + V GD ++++ R ++ K + RR +M Sbjct: 3 EVYNPSMQPSLYPGDQLVVRYRVPVRPGDVVVLRHPFRQDLLIVKRAVERREGGWWVMGD 62 Query: 199 NCC 201 N Sbjct: 63 NPD 65 >gi|241765791|ref|ZP_04763733.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241364329|gb|EER59474.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 87 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 10/71 (14%) Query: 1 MTSFSHK-----KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M S SH ++ + + LT S LA + GL + + + S Sbjct: 1 MASTSHPLVTAGQLGTVLQAARKAQGLTQSALASRVGLSQSRVSHLELNA-----HELSV 55 Query: 56 ESIFKILAATN 66 E + AA Sbjct: 56 EQLLAWCAALG 66 >gi|207721990|ref|YP_002252428.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] gi|206587163|emb|CAQ17747.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] Length = 209 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 5/97 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA + G+ + + +R P+ + K+ A Sbjct: 17 NERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAA-----SPTAAVLDKLAAGL 71 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 ++ L + + P Sbjct: 72 GISLASLFGGEREGMPAQPLMRRAQQTQWRDPESGYV 108 >gi|126699634|ref|YP_001088531.1| putative phage regulatory protein [Clostridium difficile 630] gi|254975609|ref|ZP_05272081.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092997|ref|ZP_05322475.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255101147|ref|ZP_05330124.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255307021|ref|ZP_05351192.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|255314738|ref|ZP_05356321.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255517412|ref|ZP_05385088.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255650522|ref|ZP_05397424.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|260683623|ref|YP_003214908.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260687283|ref|YP_003218417.1| putative phage regulatory protein [Clostridium difficile R20291] gi|306520479|ref|ZP_07406826.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] gi|115251071|emb|CAJ68902.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209786|emb|CBA63606.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260213300|emb|CBE04858.1| putative phage regulatory protein [Clostridium difficile R20291] Length = 123 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + I + + ++ LA K G+ S ++ + R P +E I ++ A Sbjct: 2 ESLGDRIANLRKELDINQKELATKVGITEASLSRYENN-----LREPKSEIIVRLAKALE 56 Query: 67 ET 68 + Sbjct: 57 TS 58 >gi|257437962|ref|ZP_05613717.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199622|gb|EEU97906.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 94 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 5/73 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I A+ NLT LA + G++ +K + R PS + + ++ Sbjct: 22 DIIRAMADARISQNLTQKELAERTGINQADISKLENGT-----RNPSLKLLKRLADGMGM 76 Query: 68 TICQLLDLPFSDG 80 + + Sbjct: 77 DLKLVFTPKEPQN 89 >gi|289579057|ref|YP_003477684.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528770|gb|ADD03122.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 182 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + LT + G+ ++ K ++ E PS ES+ KI + Sbjct: 2 IGDRLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAE-----PSIESLIKIADYFQVS 56 >gi|169631196|ref|YP_001704845.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC 19977] gi|169243163|emb|CAM64191.1| Probable transcriptional regulatory protein [Mycobacterium abscessus] Length = 476 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 9/103 (8%), Positives = 27/103 (26%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGGRLRQLRSERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 S ++ + L + P Sbjct: 61 ATFFSSQDDSRLIAELREVVQDKDLDIDVDPAEIADVVAGHPA 103 >gi|167767712|ref|ZP_02439765.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|240145134|ref|ZP_04743735.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|317497495|ref|ZP_07955815.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710451|gb|EDS21030.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|257202808|gb|EEV01093.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|291558919|emb|CBL37719.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] gi|316895281|gb|EFV17443.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +++K + + + +T LA K + + +K +R P+ + Sbjct: 1 MYQINNEKFGHFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNS-----MPNVTLLIP 55 Query: 61 ILAATNETICQ 71 I T+ + Sbjct: 56 IADVLGITVTE 66 >gi|118444657|ref|YP_877308.1| DNA-binding protein [Clostridium novyi NT] gi|118135113|gb|ABK62157.1| DNA-binding protein, putative [Clostridium novyi NT] Length = 185 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 34/139 (24%), Gaps = 12/139 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E + ++ LT LA + L ++ +R PS ++ IL Sbjct: 8 NIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLT-----SPSIATLVDILECLGT 62 Query: 68 TICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + + + + + + + T Sbjct: 63 NLKDFFNNDEEEKIVFSKEDIFEAEDTELNYNVQWVIPNAQKNMMEPILVTLEPNGQYKN 122 Query: 121 PEIRSPHNGIYAIQTQDTR 139 E Y + Sbjct: 123 DEPHEGEEFGYVLAGTVYI 141 >gi|91216775|ref|ZP_01253739.1| transcriptional regulator, XRE family protein [Psychroflexus torquis ATCC 700755] gi|91184936|gb|EAS71315.1| transcriptional regulator, XRE family protein [Psychroflexus torquis ATCC 700755] Length = 102 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I AI + + NLT + L G+ + +K + + R E+I K+ A N Sbjct: 39 IGNAIKQARKERNLTQTQLGELVGVQKSQISKLENHLTDAR-----FETILKVFKALN 91 >gi|332706948|ref|ZP_08427008.1| putative transcriptional regulator, CBS domain family [Lyngbya majuscula 3L] gi|332354213|gb|EGJ33693.1| putative transcriptional regulator, CBS domain family [Lyngbya majuscula 3L] Length = 93 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H I + ++ ++ LT LA G+ + + +R ++ + + T+ + + L T Sbjct: 5 HHDI--TLLKLRQQVGLTQRELAEALGVTQKTISIWERGKMQPKLSFWQTKLMMEKLNCT 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + + +L + + + F Sbjct: 63 LDQLIIATELKHQNHNEIKSTKIRPHNPRF 92 >gi|309777464|ref|ZP_07672419.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914778|gb|EFP60563.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + ++ L+ LA G+ + + ++ PS + + ++ N Sbjct: 9 IGGKIKDLRKQRGLSQKELASSIGISASFLSDIEKERSN-----PSFDKLQRLCVVLNVQ 63 Query: 69 ICQLLDLPFSD 79 L + Sbjct: 64 PGYFLSHENTY 74 >gi|308068009|ref|YP_003869614.1| hypothetical protein PPE_01233 [Paenibacillus polymyxa E681] gi|305857288|gb|ADM69076.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 124 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/116 (11%), Positives = 35/116 (30%), Gaps = 6/116 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I+ I+ + + +T ++ G+ +F KR P T + +I + + Sbjct: 2 QSIYHRIEELIKERGMTKKAFCQQLGISTGNFGDWKRGKTT-----PGTNKLIEIASFFD 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 ++ ++ G ++ + G S + Sbjct: 57 ASLDWIMLGRDVQGEVLKESQDPYFFEASGQLNCQGEPLSEAERN-FILEYIEFTR 111 >gi|258404526|ref|YP_003197268.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257796753|gb|ACV67690.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 135 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 6/102 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I+R+ + LT + LA K G+ K R S +++ K+ +A C Sbjct: 36 INRIMCKEGLTKAELADKMGVSRPYITKLLRGTNV------SLQTLAKVASALGYKTCIS 89 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + R + F Sbjct: 90 MIPKHWEARVFAVSPVNKQRQGDRRARFADGFREKEGYAYAG 131 >gi|221070070|ref|ZP_03546175.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220715093|gb|EED70461.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 104 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +H + E I + L+ LA+ A + ++ ++ + G R +++ ++ Sbjct: 1 MTH--LGERIRARRQALGLSQGRLAQMADVTASAISQIE----SGAIRTLKNDTLARLAI 54 Query: 64 ATNETICQLL 73 A T +L+ Sbjct: 55 ALQTTALELM 64 >gi|254431374|ref|ZP_05045077.1| LexA repressor, putative [Cyanobium sp. PCC 7001] gi|197625827|gb|EDY38386.1| LexA repressor, putative [Cyanobium sp. PCC 7001] Length = 132 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%) Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179 P + + SM GD+LI++ ++ G +++ Sbjct: 28 PVAIDLQRLLLPDPRGCLLLRVAGESMRDAGIHHGDLLIVDRRLEPRPG-LVVVALLEEG 86 Query: 180 IVAKVLISRRGRSIDLMSL 198 K L R G + L + Sbjct: 87 FTVKRLAGR-GTRLWLEAA 104 >gi|111221785|ref|YP_712579.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111149317|emb|CAJ61003.1| putative DNA-binding protein [Frankia alni ACN14a] Length = 500 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + E ++ LAR G+ P+ N+ + +R + + +I A Sbjct: 6 VGTRLRELREERAMSQVELARLLGISPSYLNQIEHN-----SRPLTVPVLLRITEAFG 58 >gi|323487530|ref|ZP_08092823.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum WAL-14163] gi|323399131|gb|EGA91536.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum WAL-14163] Length = 375 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 8/100 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I I R +T + LA G+ S +K + +P + Sbjct: 1 MKEL---NIARQIIRKRRERGITQAALAAHMGVSKASVSKWETGQS-----YPDITLLPG 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + + N +I +L+ ++ F + Sbjct: 53 LASYFNMSIDELMGCSMQMTEEEIQELFSRLAREFSQENA 92 >gi|302520148|ref|ZP_07272490.1| DNA-binding protein [Streptomyces sp. SPB78] gi|333026104|ref|ZP_08454168.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|302429043|gb|EFL00859.1| DNA-binding protein [Streptomyces sp. SPB78] gi|332745956|gb|EGJ76397.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 120 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + E + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MVSLDVGGLGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L + + +L Sbjct: 56 LAKALRISAETLYVQAGILDERERAEAETRAVL 88 >gi|298693687|gb|ADI96909.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED133] gi|302332086|gb|ADL22279.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus JKD6159] Length = 67 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R L + LA+ AG+ + + +R PS + KI NET+ Sbjct: 3 NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57 Query: 71 QLLDLPF 77 + + Sbjct: 58 TIFIIEE 64 >gi|296269837|ref|YP_003652469.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092624|gb|ADG88576.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 490 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 9/73 (12%) Query: 3 SFSHK-KIWE---AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 S +H+ + + + ++ LT + LA + G P+ + + R P + Sbjct: 11 SLTHELDLLAFGQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENG-----KREPKLSLL 65 Query: 59 FKILAATNETICQ 71 + A N + + Sbjct: 66 KSLATALNVPVEE 78 >gi|295106679|emb|CBL04222.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae 7-10-1-b] Length = 76 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I + ++ A G+ + F + + R + ++ KI Sbjct: 9 KIGLRIKELRAERGVSQEEFANLIGMSRSYFGEVETG-----KRNVAAVNLEKIAKGLGV 63 Query: 68 TICQLLD 74 ++ + D Sbjct: 64 SLAEFFD 70 >gi|293602468|ref|ZP_06684914.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292819230|gb|EFF78265.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 91 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ I E + + L+ +AR+A + T+ + + S ++ + Sbjct: 7 MTTLG--DIAEMLRAARKESGLSQEEMARRADVARTTLTRMENLARN----DMSVSALVR 60 Query: 61 ILAATNET 68 +L A Sbjct: 61 LLEAAGYD 68 >gi|251811388|ref|ZP_04825861.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|251805137|gb|EES57794.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|319399894|gb|EFV88140.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] gi|320142644|gb|EFW34450.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 108 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 5/106 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++HN T LA K + +K ++ E P + ++ + + Sbjct: 2 ISKQIKDLRKQHNYTQEELAEKLNTSRQTISKWEQGISE-----PDLIMLMQLSQLFSVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 L+ + + K E+ F + G Sbjct: 57 TDYLITGSDNIIKKDNKSYYEMNFWAFMSEKWWVIIIIVIIICGTI 102 >gi|158333704|ref|YP_001514876.1| peptidase S26 family protein [Acaryochloris marina MBIC11017] gi|158303945|gb|ABW25562.1| peptidase S26 family protein, putative [Acaryochloris marina MBIC11017] Length = 102 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 141 KTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGD--IVAKVLISRRGRSID 194 + Q SM+P GD ++++ GD +L + + K + S S Sbjct: 12 EVQGRSMMPTLSPGDQVLIDPRAYRLTTPQVGDIVLARHPFQSQLYLIKRIQSVDDNSYF 71 Query: 195 LMSLN 199 L+ N Sbjct: 72 LIGDN 76 >gi|76799152|ref|ZP_00781336.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76799661|ref|ZP_00781770.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76584989|gb|EAO61638.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76585504|gb|EAO62078.1| transcription regulator [Streptococcus agalactiae 18RS21] Length = 97 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + LT +A K G+ + + + G R P E++ K+ + Sbjct: 2 LKDNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGG-----RNPKDETVEKLAEIFGTS 56 >gi|125973269|ref|YP_001037179.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003748|ref|ZP_05428736.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417471|ref|ZP_06248491.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713494|gb|ABN51986.1| transcriptional regulator, XRE family with cupin sensor [Clostridium thermocellum ATCC 27405] gi|255992309|gb|EEU02403.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408873|gb|EFB39131.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940499|gb|ADU74533.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum DSM 1313] Length = 179 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 62/217 (28%), Gaps = 46/217 (21%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I ++ + +T LA +A L ++ + PS ++ IL Sbjct: 2 QIGAKIRQLRIANQMTQEELADRAELSKGFISQIENDLT-----SPSINTLVDILQCLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + F + + E P+ Sbjct: 57 DLKTFFSDSEDK---------------------QIVFREKDYFSKTDNELKNTIEWVVPN 95 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + A++ + S+ +G+ ++ +I+V+ G+ Sbjct: 96 SQKNAMEPIRMTLQPGGRSLEDHPHEGEEFGYVVKGSIEVHIGNECYRVN---------- 145 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G S S Y V + + + A+++W S Sbjct: 146 ---EGESFYFESTRKHY---IVNVGESD--AQVIWVS 174 >gi|326204709|ref|ZP_08194564.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325985080|gb|EGD45921.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 179 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I ++ ++ LT LA + L ++ +R PS ++ IL + Sbjct: 2 NIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLT-----SPSIATLIDILESLGT 56 Query: 68 TICQLLD 74 I + Sbjct: 57 NIKDFFN 63 >gi|297162420|gb|ADI12132.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 196 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/176 (8%), Positives = 42/176 (23%), Gaps = 17/176 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + LT LA A + + + +R + P+ + +I Sbjct: 1 MLDLLTLGTRVQGLRHERGLTLQQLADAAEVSVSMLSSVERGQ-----KAPTVLVLARIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GV 120 + +L+ P + + + G G + + + Sbjct: 56 DGLGVPLAELVAEPEDSRVIVRRAADQDTVE---EPGGWRRTILTPVVPGVNFEWIRTTL 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 P + ++ + ++ GD + Sbjct: 113 PPGCDAGRFPAYAPGSHEFVVVESGTLRLTLAG-------RTVDLDAGDSVYFAAD 161 >gi|293374278|ref|ZP_06620606.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] gi|292647111|gb|EFF65093.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] Length = 119 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + ++ LT LA K + ++ + + R P TE++ K N Sbjct: 2 LGKRLKQLRNSAGLTQKELANKMNISSSAVSMYE-----ADRRDPDTETLVKFSKVFN 54 >gi|293400046|ref|ZP_06644192.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306446|gb|EFE47689.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 134 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + + LT L G + + R P E++ KI A N Sbjct: 8 DIKDKIKSYRKSNGLTQKQLGEMIGSSEGMIRQYELG-----LRNPKMETLTKIANALNI 62 Query: 68 TICQLLDLPFS 78 + + L Sbjct: 63 NLFDFVPLAEW 73 >gi|239636398|ref|ZP_04677400.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] gi|239597753|gb|EEQ80248.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] Length = 179 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + NLT LA + L ++ + PS E+ IL Sbjct: 2 EIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNA-----SPSMETFLNILEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + +K+E+ I Y Sbjct: 57 SASDFFKETEQQKVIYKKEEQVIYDEYD 84 >gi|228975724|ref|ZP_04136261.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784000|gb|EEM32042.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 142 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + ++ NLT LA K G+ + R+P + + K+ + + Sbjct: 2 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCFSVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 LL +D + K+ + Sbjct: 57 ADYLLGRSVTDEPNEQVTPKDEKDI 81 >gi|254518274|ref|ZP_05130330.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912023|gb|EEH97224.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 110 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + L+ GLA G+ S K + + +P + + ++ +I Sbjct: 8 EKLQGLRKEKGLSQEGLAELVGVSRQSVAKWES-----KKSYPEVDKLVQLSNVFGVSID 62 Query: 71 QLLDLPFSDG 80 +LL + Sbjct: 63 KLLKNIEEEC 72 >gi|255100685|ref|ZP_05329662.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] Length = 44 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 KI + I R+ + NLT LA+ G+ + +K + Sbjct: 2 QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGVS 42 >gi|218440552|ref|YP_002378881.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218173280|gb|ACK72013.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424] Length = 87 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 18/47 (38%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 +I + I + + NLT A G+ T+ N+ ++ Sbjct: 9 LPQPEIGKLIRNLRQEMNLTQEQFAMMVGVVFTTVNRWEKGHANPSP 55 >gi|229514886|ref|ZP_04404346.1| hypothetical protein VCB_002537 [Vibrio cholerae TMA 21] gi|229521557|ref|ZP_04410976.1| hypothetical protein VIF_002094 [Vibrio cholerae TM 11079-80] gi|229525929|ref|ZP_04415334.1| hypothetical protein VCA_003576 [Vibrio cholerae bv. albensis VL426] gi|297579049|ref|ZP_06940977.1| fumarate reductase flavoprotein subunit [Vibrio cholerae RC385] gi|229339510|gb|EEO04527.1| hypothetical protein VCA_003576 [Vibrio cholerae bv. albensis VL426] gi|229341655|gb|EEO06658.1| hypothetical protein VIF_002094 [Vibrio cholerae TM 11079-80] gi|229347591|gb|EEO12550.1| hypothetical protein VCB_002537 [Vibrio cholerae TMA 21] gi|297536643|gb|EFH75476.1| fumarate reductase flavoprotein subunit [Vibrio cholerae RC385] Length = 151 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 5/83 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + M E+ L S +A G+ P ++ K + E P +I K+ + +L Sbjct: 9 LKEMREKAGLKQSEVAEYVGVTPQTYMKWENGKNE-----PKASNIKKLAEILKVSETEL 63 Query: 73 LDLPFSDGRTTEKKEKEIPLLYF 95 + + Y Sbjct: 64 CRGERFHKEDNPIEFMKKVAQYI 86 >gi|317120863|ref|YP_004100866.1| hypothetical protein Tmar_0014 [Thermaerobacter marianensis DSM 12885] gi|315590843|gb|ADU50139.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 131 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 5/84 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + +M E LT LA G+ + + R P +I K+ Sbjct: 2 QFADRLRKMREARGLTQRELATAIGVSRQAIGLYEAGE-----REPDLTTIQKLAHVLRT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIP 91 +I L+ Sbjct: 57 SISYLVGETDDPSPLPRSGVAAHR 80 >gi|307330189|ref|ZP_07609338.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884209|gb|EFN15246.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 190 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 7/100 (7%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT + + + R T LA +AG+ + ++ PS + Sbjct: 1 MTDLDQLTQSLARNLKRCRNERGFTLDALAARAGVSRGMIIQIEQARTN-----PSVGTT 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 K+ A +I LLD T E+ + + Sbjct: 56 VKLADALGVSITTLLDYEHGPRVTFVPPEQAVRMWSTEAG 95 >gi|302670002|ref|YP_003829962.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394475|gb|ADL33380.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 174 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + +L+ + LA + G + K + IE PS + +I N Sbjct: 6 DIGNRIKEARKAQHLSQTELANRLGKTMRTVQKYESGEIE-----PSIGVLNEIANNLNI 60 Query: 68 TICQ 71 + + Sbjct: 61 SPAE 64 >gi|291536948|emb|CBL10060.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 198 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 5/98 (5%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T S ++I +AI + +T A+ G + K + I + + + +I Sbjct: 10 TMSSPEEIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMK-----IDVLKQI 64 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 N +LL ++ K + S Sbjct: 65 ANELNVPWQELLSPEDNNIPKDNTTTKYPAYEFHTMSD 102 >gi|170754823|ref|YP_001782088.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169120035|gb|ACA43871.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 81 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ E N++ S LA AG+ + ++ + + PS + + +I A Sbjct: 4 NLKKIREEKNISQSKLAILAGISRSYVSEIESG-----KKTPSLDMLERIAEALE 53 >gi|153932832|ref|YP_001384724.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936860|ref|YP_001388245.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|152928876|gb|ABS34376.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932774|gb|ABS38273.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 81 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ E N++ S LA AG+ + ++ + + PS + + +I A Sbjct: 4 NLKKIREEKNISQSKLAILAGISRSYVSEIESG-----KKTPSLDMLERIAEALE 53 >gi|126652284|ref|ZP_01724460.1| SipS [Bacillus sp. B14905] gi|126590859|gb|EAZ84972.1| SipS [Bacillus sp. B14905] Length = 188 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 K Q SM P Y D++I++ ++ + P ++ K +I G +++ Sbjct: 40 IKVQGASMYPTYHDKDVIIVSKTSKIERFDQIVFQSPVEDELYIKRVIGVPGDKVEMK 97 >gi|21282054|ref|NP_645142.1| hypothetical protein MW0325 [Staphylococcus aureus subsp. aureus MW2] gi|49485229|ref|YP_042450.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297209138|ref|ZP_06925537.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911139|ref|ZP_07128588.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21203490|dbj|BAB94190.1| MW0325 [Staphylococcus aureus subsp. aureus MW2] gi|49243672|emb|CAG42096.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296886071|gb|EFH25005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887318|gb|EFK82514.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 67 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R L + LA+ AG+ + + +R PS + KI NET+ Sbjct: 3 NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57 Query: 71 QLLDLPF 77 + + Sbjct: 58 TVFIIEE 64 >gi|323175288|gb|EFZ60901.1| peptidase S24-like family protein [Escherichia coli LT-68] Length = 83 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%) Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 G + ++ V G+ +L P+ + G I L+ N YP ++ Sbjct: 10 IPNGSTVFVDPDRTVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPTNPRYPSIMLD 67 >gi|229096313|ref|ZP_04227286.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|229102426|ref|ZP_04233134.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|229115267|ref|ZP_04244677.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228668407|gb|EEL23839.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228681073|gb|EEL35242.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228687273|gb|EEL41178.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 181 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + LT LA A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K++K I S F + + VP S Sbjct: 63 SFLLEETNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTSSS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + I + ++ Sbjct: 117 DNILEHKGEELAFVLDG 133 >gi|257792707|ref|YP_003183313.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476604|gb|ACV56924.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 312 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 7/104 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + N+T S LA G+ S K + +P + + K+ T+ Sbjct: 5 DNLQHLRDTRNMTQSELAMLVGVSRQSVAKWE-----AEKSYPEMDKLLKLCDLFECTLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF--DSGVFPTG 112 L+ + + G + P G Sbjct: 60 DLVRGDLTGRAPDPTRSLPEDAPPVDACGYDEHMRRRAWTVPAG 103 >gi|297200612|ref|ZP_06918009.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|297147685|gb|EDY53778.2| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 195 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + A + L ++ + E + Sbjct: 56 VAKALRISAETLYVRAGILDAERDRDDVETRAVILAD 92 >gi|225571242|ref|ZP_03780240.1| hypothetical protein CLOHYLEM_07331 [Clostridium hylemonae DSM 15053] gi|225160073|gb|EEG72692.1| hypothetical protein CLOHYLEM_07331 [Clostridium hylemonae DSM 15053] Length = 251 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 63/230 (27%), Gaps = 24/230 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + ++ T LA +G+ ++ K E + + E I K+L + + Sbjct: 10 EKIKLIMQKRGFTFEDLAWLSGVPYSTLTKIGSGATE-NPGFAAMERIAKVLDCSLDEFT 68 Query: 71 QLLDLPFSDGRT------------------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + D T E + + G Sbjct: 69 DREPMVPYDYADYVYRFKKLPDNMKEYIKYTIDSEYDQMIHSASSEKIKIKCFEFTNIVG 128 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDR 170 E + + + P + +G +L + G+ Sbjct: 129 GLAQYDSRIERDIMVSSNEISRACTFCVYLSTHVLFPKFPEGSLLGFRYDDDYDPKNGEI 188 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219 I R G + + R R I + +LN + + + I R++ Sbjct: 189 -WIIMRGGFLFMGRVYKR-NRDIYVKALNGTIDHWHINSHTQYKRIGRLV 236 >gi|212697366|ref|ZP_03305494.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] gi|212675558|gb|EEB35165.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] Length = 199 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + NLT LA++ + + +K ++ E PS +++ K+ Sbjct: 34 IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSE-----PSMDNLVKLSEIFGVD 88 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 I + + + K L Sbjct: 89 IKYFKNKDDKENESFISKIFWDFLY 113 >gi|199597759|ref|ZP_03211186.1| putative transcriptional regulator [Lactobacillus rhamnosus HN001] gi|199591375|gb|EDY99454.1| putative transcriptional regulator [Lactobacillus rhamnosus HN001] Length = 99 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+ L+ LA K+G+ T+ + +R S E++ KI A Sbjct: 43 AVLEARRNAGLSQQELANKSGVPKTTIARIERGNNT------SIETLTKIANALG 91 >gi|295107365|emb|CBL04908.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 289 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + +++ + LA++ G+ S K + +P + + KI ++ Sbjct: 21 DNLQHLRDLQDMSQADLAQRIGVSRQSVAKWE-----AEKSYPEMDKLIKICDLFGCSLD 75 Query: 71 Q 71 Sbjct: 76 D 76 >gi|291458779|ref|ZP_06598169.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418696|gb|EFE92415.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 183 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I E I R+ + LT L + G+ + + + S E++ K L Sbjct: 3 IGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLK--SLEALAKALH 55 >gi|328947447|ref|YP_004364784.1| hypothetical protein Tresu_0542 [Treponema succinifaciens DSM 2489] gi|328447771|gb|AEB13487.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 71 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 8/74 (10%) Query: 1 MTSFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 MT+ + + ++ + A LD T + +R R PS Sbjct: 1 MTTEEQDILSDFGNRLRKLRIEKGFSQEKFADLTQLDRTYVSGLERG-----KRNPSYLI 55 Query: 58 IFKILAATNETICQ 71 + KI + N ++ Sbjct: 56 LLKIAKSLNISVKD 69 >gi|311900230|dbj|BAJ32638.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 200 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 9/132 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++H T + L+ + G+ ++ ++ + G R P+ E + + A Sbjct: 12 VGPRLRAIRQQHGTTLAQLSEQTGISVSTLSRLESGG-----RRPTLELLLPLARAHGVA 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +L+D P + + L S G V P G Sbjct: 67 LDELVDAPPTGDPRVRLRPFVRHGWTYLPLARSLGGMQAYKIVVPPGGGRENCEQ-RTHE 125 Query: 126 PHNGIYAIQTQD 137 H +Y + + Sbjct: 126 GHEWLYVLSGEL 137 >gi|294631347|ref|ZP_06709907.1| signal peptidase [Streptomyces sp. e14] gi|292834680|gb|EFF93029.1| signal peptidase [Streptomyces sp. e14] Length = 144 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198 + SM+P GD L++ ++ GD ++++ +V K RR +++ Sbjct: 21 EVTGPSMVPTLYHGDRLLVRYGARIRPGDVIVLRHPFQQDLLVVKRAAERREGGWWVLAD 80 Query: 199 N 199 N Sbjct: 81 N 81 >gi|294620196|ref|ZP_06699530.1| UDP-glucose 6-dehydrogenase [Enterococcus faecium E1679] gi|314940182|ref|ZP_07847360.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133a04] gi|314942401|ref|ZP_07849244.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133C] gi|314952323|ref|ZP_07855334.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133A] gi|314994234|ref|ZP_07859537.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133B] gi|314997149|ref|ZP_07862135.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133a01] gi|291593549|gb|EFF25089.1| UDP-glucose 6-dehydrogenase [Enterococcus faecium E1679] gi|313588723|gb|EFR67568.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133a01] gi|313591321|gb|EFR70166.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133B] gi|313595582|gb|EFR74427.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133A] gi|313598801|gb|EFR77646.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133C] gi|313640621|gb|EFS05201.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133a04] Length = 492 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 24/212 (11%), Positives = 62/212 (29%), Gaps = 31/212 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S K++ + I + +T LA G++ ++ + PS + + Sbjct: 1 MKKLSQKRLAQIIIDSRKSLKMTQQQLAVATGINRALISRLESLDFI-----PSIQQLES 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + N L + T+ + K I + G + + Sbjct: 56 LAEVLNFEPTDLFINESNKSNRTKHQSKNIAVAGTGYVGLSIATLLAQHNQVTAVDILPE 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRT 177 + + QD + + ++ ++ + D ++I T Sbjct: 116 KVKQINNKKS----------PIQDDYIEKYLAEKNLNLIATTDGAAAYREADFVVIAAPT 165 Query: 178 G-------------DIVAKVLISRRGRSIDLM 196 + V K+++ ++I ++ Sbjct: 166 NYDSKQNYFDTSAVESVIKLVLEVNPKAIMVI 197 >gi|239814884|ref|YP_002943794.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801461|gb|ACS18528.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 70 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S + + + + + +L+ A GLD T + +R R PS I Sbjct: 1 MISLS-VRFGKRLRELRKERDLSQEEFAAHCGLDRTYVSGMERGV-----RNPSLAVIET 54 Query: 61 ILAATNETICQ 71 + A + + Sbjct: 55 LAGALGIRVEE 65 >gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] Length = 127 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 9/77 (11%) Query: 1 MTSFSHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M+ S I + I + + LT S L+ + G+ ++ +R + + Sbjct: 1 MSKLSVTDVDRFIGKRIQQRRKELGLTASALSEQIGIAQQQLSRYERGDNK-----INVS 55 Query: 57 SIFKILAATNETICQLL 73 + +I A + +I Sbjct: 56 HLVEIATALDTSIGWFF 72 >gi|210612353|ref|ZP_03289278.1| hypothetical protein CLONEX_01479 [Clostridium nexile DSM 1787] gi|210151613|gb|EEA82620.1| hypothetical protein CLONEX_01479 [Clostridium nexile DSM 1787] Length = 231 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 32/227 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +F+ K++ E + NLT L ++ G++ ++ + + G++ + R + + L Sbjct: 9 TFTAKQVGERVKERRTELNLTMPELGKRVGVNKSTIQRYEADGVDPK-RTMIINGLAEAL 67 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYF----------------------PPSGS 100 T E + L + D RT ++ E + + Sbjct: 68 LTTPEWLTGLSEDKEYDSRTLCARDMEEHIKKYLDTVSSVVKGEPHQQLLTTFLGKMIDL 127 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--- 157 + + V E YAI+++ + M Sbjct: 128 YTVMAYHFADATAEVDRVAEDEGLKQSLRRYAIESRAIMERVYRKEMELPIEDMKQFLDG 187 Query: 158 ---ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 I + L + RG L S N Sbjct: 188 ILHIYDEGRTAVKMGDLFGIVTAAEERVAEKEKFRGS---LTSENDD 231 >gi|160940628|ref|ZP_02087971.1| hypothetical protein CLOBOL_05522 [Clostridium bolteae ATCC BAA-613] gi|158436363|gb|EDP14130.1| hypothetical protein CLOBOL_05522 [Clostridium bolteae ATCC BAA-613] Length = 102 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + + + LA K+G+ ++ + R P+ ++ KI A Sbjct: 3 DINERIIELRMERHWSEYQLAEKSGIGQSTISSWTRTKS-----MPTVPNLEKICNAFGI 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 T+ Q + ++E+ Sbjct: 58 TLSQFFADKEERTVSLSPVQQEMLH 82 >gi|170736538|ref|YP_001777798.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818726|gb|ACA93308.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 95 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +A+ L+ + +A + G + + +R G+ PS +++ K AA +T Sbjct: 31 LLDAMLAARREAGLSQADVAARMGTKAPAITRLERALATGQ-HSPSVDTLRKYAAACGKT 89 >gi|86140912|ref|ZP_01059471.1| hypothetical protein MED217_17210 [Leeuwenhoekiella blandensis MED217] gi|85832854|gb|EAQ51303.1| hypothetical protein MED217_17210 [Leeuwenhoekiella blandensis MED217] Length = 135 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ I I R+ E + LA + G+ S + ++ E + K Sbjct: 1 MTTTKPNHIGRKIARIRELRGMKQEALAHELGISQQSVSHMEQSES---LEDSKLEEVAK 57 Query: 61 ILAAT 65 +L T Sbjct: 58 VLGVT 62 >gi|320547716|ref|ZP_08042001.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447791|gb|EFW88549.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 114 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 6/100 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ L+ LA + + S +K + P E++ KI ++ +L Sbjct: 11 LKKLRVERKLSQDALAEQLFISRQSISKYETGEST-----PDLENLIKIADILGVSLDEL 65 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + E++ + FP G Sbjct: 66 VLGKKPCKIVERVIERKESSSMNIWEFLDKKWWLV-FPIG 104 >gi|296128685|ref|YP_003635935.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296020500|gb|ADG73736.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 446 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I ER L+ + LAR A + P+ + +R R P ++ ++ A Sbjct: 19 VSERIRDARERSGLSQADLARAAMMHPSYVSHLERGV-----RGPGDGALERLARALG 71 >gi|258654748|ref|YP_003203904.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557973|gb|ACV80915.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 129 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 7/112 (6%) Query: 1 MTSFS---HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M S +++ + + L+ S +AR+A + P S + + R PS E+ Sbjct: 1 MPQLSFTQQEELADLLRGRRHELGLSASEVARRADITPASVTRLENCTN---PR-PSVET 56 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + I A + + +L L + + + + Sbjct: 57 LTAICAVLDIPVADMLALVNVMPDSQLPSFTPYLRTKYHRMPDEAVQEMSAY 108 >gi|256823110|ref|YP_003147073.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796649|gb|ACV27305.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 175 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 45/180 (25%), Gaps = 12/180 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + + LA G+ + + +R + PS E+ + A I Sbjct: 3 VRKLRLKRGWSQEQLAELTGVSTRTIQRIERGQTK-----PSLETQKSLAAVFEVDIATF 57 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPHNGIY 131 D P V V + H I+ Sbjct: 58 EPSLSMDSTGEPDMSTTDTNATEPKQQPDKPAIETVSHEEAEAMEYVKGIKEFYSHLLIF 117 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVA-KVLISR 188 I T + ML + ++ +Q ++ + K L + Sbjct: 118 IIFTVMFIFTGKINDMLIAWSAWTFGLIIHGLQAFE---VINLFKINWEKKMVEKRLKKK 174 >gi|197105901|ref|YP_002131278.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479321|gb|ACG78849.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 206 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I A+ + LT LA ++GL ++ +R PS S+ +I A Sbjct: 23 NIGPAVRVRRKELGLTLKELAERSGLSVAFISQIERGKT-----APSIISLLQISDALGV 77 Query: 68 TICQL 72 + Sbjct: 78 GVNHF 82 >gi|163746908|ref|ZP_02154265.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161380022|gb|EDQ04434.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 205 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 35/86 (40%), Gaps = 5/86 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + + + LT S LA +G+ ++ +K + + P+ + + ++ Sbjct: 1 MTTAHALGARLRHLRKSRKLTLSALASLSGVAVSTISKIENGAL-----SPTLDKVLRLA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEK 88 + +I QL+ D ++ + Sbjct: 56 DGLDLSIGQLIGEEQIDDHKSQPNSR 81 >gi|83945538|ref|ZP_00957885.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83851114|gb|EAP88972.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 71 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + A+ + LT + LA + G+ + N + PS KI Sbjct: 1 MSRSGLENAMKALRAEAGLTQADLAARVGVTRKTINTVENGVFT-----PSALLALKIAR 55 Query: 64 ATNETICQLL 73 A + + Q+ Sbjct: 56 ALGQPVEQVF 65 >gi|257870115|ref|ZP_05649768.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] gi|257804279|gb|EEV33101.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] Length = 180 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 5/100 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 EIGEKLRNLRVQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFTILEVLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 T + +D + ++E + Sbjct: 57 TPEEFFRQENADHQVVYREEDSTSYYDEENGYELRWLIPD 96 >gi|326202757|ref|ZP_08192625.1| Peptidase S24/S26A/S26B, conserved region [Clostridium papyrosolvens DSM 2782] gi|325987341|gb|EGD48169.1| Peptidase S24/S26A/S26B, conserved region [Clostridium papyrosolvens DSM 2782] Length = 800 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/122 (9%), Positives = 27/122 (22%), Gaps = 21/122 (17%) Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 V N + + SM P + G + + ++++ Sbjct: 673 EEYVEQ-LGWMKVNEQLKLGNDMFIAQVVGRSMEPTIKDGAFCVFRFERGGSRNGKVVLV 731 Query: 175 PRTG--------DIVAKVLI----SRRGR-----SIDLMSLNCCYPVDTVE---MSDIEW 214 K + I L N + +E + + Sbjct: 732 ESRHVSDPESLQSYTIKRYRSKKVYQTDGTWIHEKIILSPDNIDFEDIILENVNEDEFKV 791 Query: 215 IA 216 +A Sbjct: 792 VA 793 >gi|158339609|ref|YP_001520998.1| hypothetical protein AM1_A0348 [Acaryochloris marina MBIC11017] gi|158309850|gb|ABW31466.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 83 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 17/53 (32%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + L+ S LAR + ++ + + K+L + Sbjct: 2 KTLRQDAGLSQSELARALDIAESTVRNWDQGRSIPTLSALEYPHLLKLLNCSP 54 >gi|189426730|ref|YP_001953906.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] gi|189422989|gb|ACD97386.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 79 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I R +T +A+ G+ T+ ++ ++ ++ + +IL Sbjct: 5 IGSNIREARRRRKITQEQMAKALGMSRTTISQIEKGIVQ----EVGVRKLIRILEYLG 58 >gi|315441649|ref|YP_004074526.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] gi|315265304|gb|ADU02045.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] Length = 399 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 3/95 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E IDR H ++ S +AR+ G+ + K + I G +R P E++ + + Sbjct: 5 RLVELIDRYRTAHGVSESEVARRIGMSRENLRKWR---INGVSRLPDRENLAAVARVIGK 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 +++ D + P + Sbjct: 62 PYREVVSAALFDTAYLTDDQASTPRPHNEVLHDAI 96 >gi|291549688|emb|CBL25950.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 253 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S++K + + + NLT LA K + + +K +R P+ + Sbjct: 1 MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 55 Query: 61 ILAATNETICQ 71 I + T+ + Sbjct: 56 IADILDVTVTE 66 >gi|242398850|ref|YP_002994274.1| Predicted transcription regulator, containing CBS domains [Thermococcus sibiricus MM 739] gi|242265243|gb|ACS89925.1| Predicted transcription regulator, containing CBS domains [Thermococcus sibiricus MM 739] Length = 186 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 5/101 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R + +T LA++AG+ K + ++ P + +IL A E Sbjct: 13 IKRFRKELGITQEELAQRAGVTQAYIAKLETGKVD-----PRLSTFNRILQALKECKKSR 67 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + Y + GN Sbjct: 68 FTAKELMSSPIIGVKPYETVEYVVKLMNEYNISQVPVIAGN 108 >gi|154501020|ref|ZP_02039058.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] gi|150270044|gb|EDM97563.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] Length = 114 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ I I + + L+ + LA +A L + +R + S ++ + Sbjct: 1 MREQDYRNIGVRIHNLRKLRGLSQAALAERAELSTPYISHIERGM-----KLLSLPALLR 55 Query: 61 ILAAT 65 I A Sbjct: 56 IAEAL 60 >gi|332283797|ref|YP_004415708.1| hypothetical protein PT7_0544 [Pusillimonas sp. T7-7] gi|330427750|gb|AEC19084.1| hypothetical protein PT7_0544 [Pusillimonas sp. T7-7] Length = 111 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++ + + LT LA +AGL+ + + + ++ P ++ ++ A Sbjct: 5 LVSELEALRKAAGLTQGQLADRAGLNRMTVQRLESGSLD-----PRVSTLLEMARAMGME 59 Query: 69 IC 70 + Sbjct: 60 LM 61 >gi|331699134|ref|YP_004335373.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953823|gb|AEA27520.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 175 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 34/140 (24%), Gaps = 9/140 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI + + LA +GL ++ +R R S ++ L T + Sbjct: 2 GAAIRSRRRSIGINITELAALSGLSRPFVSQLERGLARPSMR--SLTALANALNTTAHAL 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L D + + + P + E Sbjct: 60 MALPDEAPVTLVRRDAPNSLGIGHSDGQARGLFRERRTMLPVEYRSGPREFEE------- 112 Query: 130 IYAIQTQDTRHKTQDTSMLP 149 Y + ++ + + Sbjct: 113 YYVHRGEEFMYVVSGDFEMD 132 >gi|322376010|ref|ZP_08050520.1| putative transcriptional regulator [Streptococcus sp. C300] gi|321278960|gb|EFX56003.1| putative transcriptional regulator [Streptococcus sp. C300] Length = 67 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R L + LA+ AG+ + + +R PS KI N Sbjct: 2 LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIVIALKISHIFN 54 >gi|307330907|ref|ZP_07610040.1| putative phage repressor [Streptomyces violaceusniger Tu 4113] gi|306883448|gb|EFN14501.1| putative phage repressor [Streptomyces violaceusniger Tu 4113] Length = 164 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198 + + SM P GD L++ V GD ++++ R ++ K + RR + Sbjct: 26 EVYNPSMQPTLYPGDQLVVRYGAPVRPGDVVVVRHPFRQDLLIVKRAVERREGGWWVKGD 85 Query: 199 NC 200 N Sbjct: 86 NP 87 >gi|295110993|emb|CBL27743.1| Predicted transcriptional regulator with C-terminal CBS domains [Synergistetes bacterium SGP1] Length = 140 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + LARK G+ + ++ + + S++ + I +A + Sbjct: 4 IGANIKARRRALGMNQEELARKLGVTQANISRIESSV-----KGLSSDMLLPIASALSCD 58 Query: 69 ICQ 71 + + Sbjct: 59 VRE 61 >gi|240169850|ref|ZP_04748509.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 474 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 9/103 (8%), Positives = 27/103 (26%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRSERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + ++ L + G P Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVGAHPA 103 >gi|195546600|ref|YP_002117628.1| p070 [Rhizobium phage 16-3] gi|102642543|gb|ABF71324.1| p070 [Rhizobium phage 16-3] Length = 203 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 22/205 (10%), Positives = 57/205 (27%), Gaps = 23/205 (11%) Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 + LT A++ G+ +++ K + P I + + + Sbjct: 7 AKRGLTDYKAAKEIGVLQQTYSSWKHGSV------PRPNRYAAIAGWLHIS-IDMARELC 59 Query: 78 SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137 + + K + +G G F + + I + Sbjct: 60 EEAVASTGNTKLPRVAPVAEAGRVADRKEGKFK-------FDTASPGNAGSSGSRIPSSR 112 Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 M P G L+ ++ G+ +++ + G L S ++ Sbjct: 113 YTVSVDTKVMEPALLVGTKAWLDPSVWPKIGNEVMVHGKGGIAWLGRLESLENGRAEISR 172 Query: 198 L---NCCYPVDTVEMSDIEWIARIL 219 N + + D++ + ++ Sbjct: 173 YALGN------RITIDDVQAVHAVV 191 >gi|163813853|ref|ZP_02205247.1| hypothetical protein COPEUT_00006 [Coprococcus eutactus ATCC 27759] gi|158450723|gb|EDP27718.1| hypothetical protein COPEUT_00006 [Coprococcus eutactus ATCC 27759] Length = 45 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 17/43 (39%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 KK+ + + + LT LA + G+ S ++ + Sbjct: 1 MDQKKVGSFLRELRKEKQLTQEQLAERFGVTNRSVSRWETGVS 43 >gi|328944742|gb|EGG38903.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 168 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 5/145 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E + ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL + ++ Y+ S GF+ + P Sbjct: 57 TTDYLLLEDSDKPKIKPVLSEDEKNRYYKEVKSYGFWQVLYIFISALAIFLFFAGSSFPA 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152 + ++ + Sbjct: 117 KFTALVWLSFFLLIASAMAINKALK 141 >gi|317473654|ref|ZP_07932943.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] gi|316898944|gb|EFV20969.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] Length = 239 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 6/62 (9%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +E ++R+ + + L + + + +K + P + ++ +I Sbjct: 4 YENLNRLRKEKGWSQEELGNRLNVSRQTVSKWELGSTT-----PELNKLMELSRIFQVSI 58 Query: 70 CQ 71 + Sbjct: 59 DE 60 >gi|78187660|ref|YP_375703.1| hypothetical protein Plut_1806 [Chlorobium luteolum DSM 273] gi|78167562|gb|ABB24660.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 370 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 35/147 (23%), Gaps = 5/147 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + R+ + LA AG+ + + E P S+ I A + + Sbjct: 8 ANVRRLRSMKRFSQKELAEAAGMSLPAIKNLELQKSE-----PRMSSLQAIARALDVPLQ 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + + + + D + + + Sbjct: 63 DFFRPVRQLHSVRFRSGRRMQNRENVLADVSRWLDDYEYLEQCLKRELPFRLEAERASCF 122 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDIL 157 A + + + P DI Sbjct: 123 RARPVEAAALCREKLGLKPTEPIHDIC 149 >gi|332798146|ref|YP_004459645.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695881|gb|AEE90338.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 100 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 5/90 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I ++ L LA K G+ + + PS E++ KI A Sbjct: 2 NIGHRIKQIRIAKGLQGIQLAEKVGITNVYLSYLENGTKI-----PSIETLQKICDALGI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 T+ + ++ ++ E + P Sbjct: 57 TLSEFFMDENANLPPEYQELIENVKVLSPK 86 >gi|325479131|gb|EGC82228.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 91 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 5/56 (8%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + + + + + L K G+ + + +R + S+ ++ Sbjct: 24 RLVNNLSSLRKEKGMNQTELGEKVGVSRQTISLIERG--DYNPSVLVALSLARVFE 77 >gi|294619377|ref|ZP_06698838.1| plasmid maintenance system antidote protein, XRE family [Enterococcus faecium E1679] gi|291594381|gb|EFF25797.1| plasmid maintenance system antidote protein, XRE family [Enterococcus faecium E1679] Length = 367 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 5/103 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + +AE L+ LA + G+ P + +K E+ K+ + Sbjct: 18 GETLKEVAEELGLSHKDLAERLGITPKTISKIVNGTAPITP-----ETALKLERVLGISS 72 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 L + + E E L + + G Sbjct: 73 NFWNQLELNYREKLTEIEAEAKLKDEIEILKEYIPYNEIANAG 115 >gi|225570293|ref|ZP_03779318.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] gi|225160825|gb|EEG73444.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] Length = 262 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 8/92 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + ++ + NLT LA + T+ +K + +PS +S+ + Sbjct: 59 MAKL---EFNEKLQKLRKSKNLTQEQLAEILSVSRTAISKWESGRG-----YPSIDSLKE 110 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 I ++ LL E +++I Sbjct: 111 ISKFFTISLDDLLSSEEILNAAQEDTDRKIHH 142 >gi|210635071|ref|ZP_03298410.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] gi|210158511|gb|EEA89482.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] Length = 226 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 10/135 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I + H ++ LA + + + + + +P +S+ + Sbjct: 19 KIGGRIRELRAIHGMSQDDLAARVYVSRQTISSWENGKT-----YPDVQSLLLLSEIFGA 73 Query: 68 TICQLLDLPFSDGRTTEKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 ++ L+ + T ++ + F + W+ +P+ Sbjct: 74 SVDSLIKGDVNAMNETIDRDAKTMKRLTYAMFAFLLLMIAALAWAVVQLVAWDW-PLPQT 132 Query: 124 RSPHNGIYAIQTQDT 138 + + Sbjct: 133 APSFILAFVLWGIAM 147 >gi|297190678|ref|ZP_06908076.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719901|gb|EDY63809.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 202 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/144 (9%), Positives = 38/144 (26%), Gaps = 9/144 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IFKILAAT 65 + + + +T + LA G+ ++ ++ + R PS E + +I Sbjct: 13 VGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQ-----RRPSLELLLPLARIYDVP 67 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + + + G + P + Sbjct: 68 LDDLVGAPRTGDPRIHLKPIRRFGMTFVPLSRRPGGVHAFKMIIPAQPGPLE-PTLQTHE 126 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP 149 +Y + + + LP Sbjct: 127 GFEWLYVLNGRLRLVLGERDLTLP 150 >gi|15895220|ref|NP_348569.1| phage related transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024927|gb|AAK79909.1|AE007699_19 Phage related transcriptional regulator (Xre family) [Clostridium acetobutylicum ATCC 824] gi|325509365|gb|ADZ21001.1| Phage related transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 123 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ + LT LA + GL + +K + G S E++ + N T Sbjct: 2 LGENLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTG-----SIETLQTLSNYFNVT 56 Query: 69 ICQ 71 + + Sbjct: 57 VDE 59 >gi|310639686|ref|YP_003944444.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309244636|gb|ADO54203.1| Predicted transcriptional regulator [Paenibacillus polymyxa SC2] Length = 116 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + +R NLT LA + L + +R R S E++ K+ Sbjct: 5 DLGTRIRQERQRLNLTQEKLAERVDLSHAYIGQIERGE-----RSLSLETLVKLANELG 58 >gi|310828547|ref|YP_003960904.1| hypothetical protein ELI_2972 [Eubacterium limosum KIST612] gi|308740281|gb|ADO37941.1| hypothetical protein ELI_2972 [Eubacterium limosum KIST612] Length = 118 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 1/87 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + + LA G T +R E R ++I K L + E Sbjct: 3 IGERLKEARKAKGFSQDKLAEAIGTSRTVITDIERDKTE-HPRVSYVDTICKTLEISKEW 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + + E + Sbjct: 62 LLREEGPMAYPLPEWNANEILTQIHEI 88 >gi|269956025|ref|YP_003325814.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304706|gb|ACZ30256.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 88 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 16/40 (40%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 ++ +AI + +T + LA G+ ++ E Sbjct: 21 RLGQAIKALRRERGMTQADLADAIGVSRQWIIGIEKGTKE 60 >gi|297560997|ref|YP_003679971.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845445|gb|ADH67465.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 187 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 41/141 (29%), Gaps = 11/141 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + + + L+ LA +G+ ++ + + P+ + + Sbjct: 1 MSDTLGTALASTLRELRRARGLSGGALAELSGVSRGMISRIENGEAQ-----PTASLLGR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + AA T+ +L+ +++ G+ V P + + Sbjct: 56 LAAALGITLSELIARAEQ----GDRRLVRAREQPVWTDPGTGYRRRAVSPASGGP--IEL 109 Query: 121 PEIRSPHNGIYAIQTQDTRHK 141 E+ P Q Sbjct: 110 VEVELPPGARVGFPAQAYALT 130 >gi|257791416|ref|YP_003182022.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475313|gb|ACV55633.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 205 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 E + + LT LA K + T+ +K + G G S + + ++ Sbjct: 4 GEKLKALRTERGLTQEQLAAKLYVSRTAVSKWETGG--GSPNLDSLQVVARLFD 55 >gi|226361238|ref|YP_002779016.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226239723|dbj|BAH50071.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 168 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA+ AG+ ++ +R R PS E + +I Sbjct: 25 DIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERG-----LRKPSAEVLGQIAKGLRV 79 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 + L + + Sbjct: 80 SSEVLYVQAGYLEQRPHGPLR 100 >gi|327472198|gb|EGF17635.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 168 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 37/145 (25%), Gaps = 5/145 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL ++ Y+ S GF+ + P Sbjct: 57 TTDYLLLEDSDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152 + ++ + Sbjct: 117 KFTALVWLSFFLLIASAMAINKALK 141 >gi|289547795|ref|YP_003472783.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] gi|289181412|gb|ADC88656.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] Length = 329 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ER L+ LA+ + T+ + +R + PS +I A ++ Sbjct: 3 NRVKELRERAGLSQEELAKLCKIPRTTLSAIEREMVV-----PSVSHAIRIARALGCSVE 57 Query: 71 QLLDLPF 77 +L Sbjct: 58 ELFPQEE 64 >gi|251810483|ref|ZP_04824956.1| bacteriophage repressor [Staphylococcus epidermidis BCM-HMP0060] gi|282875460|ref|ZP_06284331.1| toxin-antitoxin system, antitoxin component, Xre family [Staphylococcus epidermidis SK135] gi|251806087|gb|EES58744.1| bacteriophage repressor [Staphylococcus epidermidis BCM-HMP0060] gi|281295487|gb|EFA88010.1| toxin-antitoxin system, antitoxin component, Xre family [Staphylococcus epidermidis SK135] gi|329732997|gb|EGG69338.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] Length = 109 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 5/99 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ +I I + +++ S LAR+ G+ ++ ++ R Sbjct: 1 MRNNDEIITIIKSAMKEQDMSLSELARRVGVAKSAVSRYLNLT-----REFPLNRTEDFA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 A + + LL S+ + + K + L Sbjct: 56 KALSISTEYLLGFDKSEQQDEQPKHRAAHLEGELTDEEW 94 >gi|254387045|ref|ZP_05002322.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194345867|gb|EDX26833.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 223 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 43/135 (31%), Gaps = 8/135 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ T + L G+ ++ ++ + R P+ E + + A Sbjct: 17 VGPRLRALRQQRGTTLAQLGEITGISLSTLSRLESGQ-----RRPTLELLLPLAKAHRVA 71 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-GSGGFFDSGVFPTGNKWNTVGVPE--IRS 125 + +L+ P + + + P G + + +PE + Sbjct: 72 LDELVGAPETGDPRIRPRPFVRHGSTYVPLTRHFGGVHAFKTIMPPVDGSAPLPELRVHE 131 Query: 126 PHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 132 GYEWLYVLSGRVRLL 146 >gi|196038315|ref|ZP_03105624.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225865525|ref|YP_002750903.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228916172|ref|ZP_04079742.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930568|ref|ZP_04093562.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229185777|ref|ZP_04312953.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|196030723|gb|EDX69321.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225790340|gb|ACO30557.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228597689|gb|EEK55333.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|228829089|gb|EEM74732.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843370|gb|EEM88448.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I + ++ NLT LA K G+ + R+P + + K+ Sbjct: 2 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCF 53 >gi|90581518|ref|ZP_01237311.1| hypothetical transcriptional regulator [Vibrio angustum S14] gi|90437280|gb|EAS62478.1| hypothetical transcriptional regulator [Vibrio angustum S14] Length = 213 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 55/215 (25%), Gaps = 12/215 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I R+A+ ++ L L + ++ R + KI N + Sbjct: 4 LERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRE-----LEKIADTLNTS- 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + D T L F N ++V V R+ Sbjct: 58 IGYILTGQVDTGTQATTTISTELDSAATCTYIPVIHRKDFSAYNDGSSVEVISKRAIPQ- 116 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + ++ G + + + R + + Sbjct: 117 -HLEREECLGLLIDNENISQCAPVGSYALATKKAEYRPKQPVFASVRGSEPDFYHMTQLA 175 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221 + S +P V + + I+ WA Sbjct: 176 DGVVFSTSQ-PDFPNLFVNNDEFQIHGYIIQSDWA 209 >gi|310829907|ref|YP_003962264.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308741641|gb|ADO39301.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 112 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 5/85 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M HK I I + N++ LARK G+ PT + + S +S+ + Sbjct: 1 MQELDHKAIGLRIRKQRTFLNMSRDELARKIGITPTFLADIELGT-----KGFSLKSLNR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEK 85 + +L P T Sbjct: 56 FCDVLKMSADAILYGPKEYMGTKYA 80 >gi|269963924|ref|ZP_06178236.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831411|gb|EEZ85558.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 335 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 37/139 (26%), Gaps = 13/139 (9%) Query: 10 WEAIDRMAERHNLTPSGLARK--------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 E + ++ E LT LA K A +DP + ++ +R P+T +I Sbjct: 32 GEYLKQLREEIGLTQKELATKLNLASTDFASIDPVTISRWERGTT-----APTTVKAIRI 86 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L + L S+ +E P + + + Sbjct: 87 LRVLTTDLMPFLITLPSESGKGIFEEIVEYRFKSPWATLMSSSYDTQSKCNAITESQLLE 146 Query: 122 EIRSPHNGIYAIQTQDTRH 140 + + Sbjct: 147 SDKDDYLTSLKHFFNSLSL 165 >gi|258517093|ref|YP_003193315.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780798|gb|ACV64692.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 61 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ ++ +T LA+K G+ ++ + GR + PST + KI + + +L Sbjct: 4 IRKLRIKYGVTQEKLAQKVGISRIYLSELEN----GRKKNPSTTLLEKIAKNFDVRVSEL 59 Query: 73 L 73 Sbjct: 60 Y 60 >gi|225377083|ref|ZP_03754304.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] gi|225210988|gb|EEG93342.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + ++ LT LA ++ L ++ +R PS ++ I+ Sbjct: 63 DIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNT-----PSIGTLLDIIQCLGT 117 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 T + + + ++ + Sbjct: 118 TPAEFFTDEEPEQIVFKNEDFFTKV 142 >gi|332982996|ref|YP_004464437.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700674|gb|AEE97615.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 222 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/109 (9%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + ++ + + A K GL ++ + + + T+ + I + + Sbjct: 78 EIANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEEGNRQPDIKL--TKKLADIFNVSAD 135 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + +++P S + + F + Sbjct: 136 YLIGRINVPNSYIPEEYAQRYPVTKRDLSQYEDFIEHIDQFFMNDDVPE 184 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ ++ LT L++KAG+ + + + PS + + ++ T Sbjct: 3 VGERLKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSN-----PSLKRLSELAEVLGTT 57 >gi|332798913|ref|YP_004460412.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696648|gb|AEE91105.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 184 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 44/163 (26%), Gaps = 12/163 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------ 59 + I + + E+ +T LA KAG+ P+ ++ + + SI Sbjct: 3 NANIGKKLQLYREQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVPMF 62 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV- 118 K ++T ++ +E I L P F P V Sbjct: 63 KFFITDDDTKKYIVRKDSRKTIGWPSEEDIIYWLLTPGISGDIEFCIMEIPPHKNQEGVV 122 Query: 119 -----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 + T D+ ++P + Sbjct: 123 QSHVGEEVAYILEGPVNILLDGNLYTLYTGDSLVIPSFTNHRW 165 >gi|327463455|gb|EGF09774.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 167 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 T LL ++ Y+ S GF+ Sbjct: 57 TTDYLLLEESDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFISA 102 >gi|319893634|ref|YP_004150509.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius HKU10-03] gi|317163330|gb|ADV06873.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius HKU10-03] Length = 67 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R + LA+KAG+ + + +R G PS + KI Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNGFT-----PSILTSIKIARIFG 53 >gi|254551040|ref|ZP_05141487.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 346 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + LT LA GL + N+ + +R P + K+ Sbjct: 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESG-----DRDPDQHIVAKLAEILG 56 >gi|166362821|ref|YP_001655094.1| hypothetical protein MAE_00800 [Microcystis aeruginosa NIES-843] gi|166085194|dbj|BAF99901.1| hypothetical protein MAE_00800 [Microcystis aeruginosa NIES-843] Length = 73 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M S ++I + R + + LA GL T ++ +R R S Sbjct: 1 MQSGQLEQILGRELQRYRQEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLS 55 >gi|153854463|ref|ZP_01995741.1| hypothetical protein DORLON_01736 [Dorea longicatena DSM 13814] gi|149752989|gb|EDM62920.1| hypothetical protein DORLON_01736 [Dorea longicatena DSM 13814] Length = 499 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 19/181 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + ++T LA G++ + ++ ++ PS + + Sbjct: 7 MKKLSQSLLANLVTNRRKEKHMTQQDLADITGINRSMISRLEKEDFI-----PSIPQLEQ 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + L + + + +G G + + N V + Sbjct: 62 LGETLDFEPQTLFVDAGNTKLPSPSPLN----IAVAGTGYVGLSIATLLAQHNHVTAVDI 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD---ILILNSAIQVNCGDRLLIKPRT 177 + QD + + D L+ D ++I T Sbjct: 118 IPEKVELINNRKSP-------IQDDYIEKYLAEKDLDLTATLDGESAYKDADFVVIAAPT 170 Query: 178 G 178 Sbjct: 171 N 171 >gi|150018645|ref|YP_001310899.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905110|gb|ABR35943.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 371 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 54/199 (27%), Gaps = 38/199 (19%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I E I + +T LA G+ S +K + +P + + Sbjct: 1 MKKL---NIGECIAYKRKEKGVTQEQLADYIGVSKASVSKWESGLS-----YPDILLLPE 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + N ++ +LL + KK F Sbjct: 53 LATYFNISVDELLGYSPQLKKEDIKKIYNELSHEFAIK---------------------- 90 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + I+ + P D L++N +I D + + Sbjct: 91 PFDEVTNRCEKLIKKYYSCF--------PFLLSMDQLLINYSILAKTEDIKREIFQKCIL 142 Query: 181 VAKVLISRRGRSIDLMSLN 199 ++K + ++ S N Sbjct: 143 LSKRIKEESDNITEIKSSN 161 >gi|328883993|emb|CCA57232.1| Transcriptional regulator, XRE family [Streptomyces venezuelae ATCC 10712] Length = 138 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + L+ LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGNLGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + A + L + + ++ Sbjct: 56 VAKALRISAETLYVRAGILDEKERDELETRAVI 88 >gi|294500115|ref|YP_003563815.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350052|gb|ADE70381.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 181 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 41/137 (29%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + +++ + L+ LA+ A + P+ ++ +R + K L Sbjct: 5 DIGKKVEKFRKAKGLSSRELAKLAEITPSMLSQIERGLANPSISTLKI--LAKCLDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +++ S F + + VP ++S Sbjct: 63 SFLLEEINTSHLVVRLNERKTMKVKELTYSLVSPDFTGNLATAI------MEVPPMKSSS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 A + ++ + + Sbjct: 117 ESPLAHKGEEVAYVLEG 133 >gi|220909774|ref|YP_002485085.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866385|gb|ACL46724.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 99 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 2/87 (2%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T + +I I ++ + LT A G+ T+ N+ + ++ + + I ++ Sbjct: 14 TRLAQPQISHLIRQIRQGMGLTQEQFAMVLGVTYTTVNRWENAHMQPSP--LALKQICQM 71 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEK 88 L + T + E Sbjct: 72 LKELSTTADPAYRQQWQLMLEDYFPEA 98 >gi|169627870|ref|YP_001701519.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239837|emb|CAM60865.1| Hypothetical transcriptional regulator [Mycobacterium abscessus] Length = 185 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/105 (9%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ L+ + LA ++G+ S ++ + R +++F + A Sbjct: 10 EVGARLRRLRTEAGLSLAELATRSGVGKGSISELENG-----RRTARLDTLFALTKALGA 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + + + + + + G+ + Sbjct: 65 PLSAAVGVSPPADGPSVHGQAVHAVSLSGWQTDDGYVEVYRITVE 109 >gi|325128210|gb|EGC51097.1| hypothetical protein NMXN1568_1041 [Neisseria meningitidis N1568] Length = 55 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 4/50 (8%) Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARILW 220 D+ K + + + S N Y +++ DI + R+ W Sbjct: 1 MRIGNDLFVKRVQRIP-GKLLVTSENSRYAPFEIDLSHTDDIAIVGRVEW 49 >gi|255324218|ref|ZP_05365340.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] gi|255298734|gb|EET78029.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] Length = 492 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 5/129 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ + LA GL + N+ + R + + +I Sbjct: 29 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 83 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + + L P + V V Sbjct: 84 ATFFSRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDVHRRYRNVR 143 Query: 129 GIYAIQTQD 137 ++ T Sbjct: 144 DKLSLATDA 152 >gi|311741010|ref|ZP_07714835.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303812|gb|EFQ79890.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 492 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 5/129 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ + LA GL + N+ + R + + +I Sbjct: 29 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 83 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + + L P + V V Sbjct: 84 ATFFSRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDVHRRYRNVR 143 Query: 129 GIYAIQTQD 137 ++ T Sbjct: 144 DKLSLATDA 152 >gi|225570465|ref|ZP_03779490.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] gi|225160662|gb|EEG73281.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] Length = 194 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 16/139 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + +LT LA +A L ++ +R PS ++ +L Sbjct: 17 DIGKKLKELRIAKDLTQEELADRAELSKGFISQLERDLT-----SPSIATLVDLLQVLGT 71 Query: 68 TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 TI + + K P + + + Sbjct: 72 TINEFFSEDPEEQIVFHDEDYFEKIDTDLKNKTEWIIPNAQKNMMEPIRLTLEPGGSTYL 131 Query: 119 GVPEIRSPHNGIYAIQTQD 137 VP Y ++ Sbjct: 132 DVP--HEGEEFGYVLKGSI 148 >gi|116249777|ref|YP_765615.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|241206954|ref|YP_002978050.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254425|emb|CAK05499.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|240860844|gb|ACS58511.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 125 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EA+ R+ R ++ +A + P + + G+ P+ + + + Sbjct: 1 MTPF-----GEAVRRLRARKGVSQKEMAEALNVSPAYLSALE----HGKRGLPTFDLLQR 51 Query: 61 ILAATNETICQ 71 I N + Sbjct: 52 IAGYFNIIWDE 62 >gi|38257067|ref|NP_940721.1| Orf36 [Pseudomonas syringae pv. syringae] gi|37723844|gb|AAR02170.1| Orf36 [Pseudomonas syringae pv. syringae] Length = 115 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K I I + LT S LA + S + +R P E + K+ Sbjct: 5 RKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAET-----APDGEQLIKMAEFF 59 Query: 66 NETICQ 71 + Sbjct: 60 EISPMD 65 >gi|332186364|ref|ZP_08388109.1| helix-turn-helix family protein [Sphingomonas sp. S17] gi|332013732|gb|EGI55792.1| helix-turn-helix family protein [Sphingomonas sp. S17] Length = 463 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 34/121 (28%), Gaps = 6/121 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ R+ + L+ + +A + P+ N +R R S + +++ + Sbjct: 9 GHAVRRLRRQQGLSQAAMAEMLDISPSYLNLIERNQ-----RPVSAALLVRLVETFDFDP 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L G ++ + ++ + + R G Sbjct: 64 RALTADAPGGGAAAMRR-RLADPMFADLEIDRAELEEWLAAAPGGVEAFARAFDRWSGEG 122 Query: 130 I 130 Sbjct: 123 A 123 >gi|328478429|gb|EGF48170.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 140 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+ + L+ LA K+G+ T+ + +R S E++ KI A Sbjct: 84 AVLEARQNAGLSQQELANKSGVPKTTIARIERGSNT------SIETLTKIANALG 132 >gi|297157339|gb|ADI07051.1| hypothetical protein SBI_03930 [Streptomyces bingchenggensis BCW-1] Length = 178 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198 + + SM+P GD L++ V GD ++++ R ++ K + RR +M Sbjct: 37 EVYNPSMVPTLNPGDRLVVRYGAAVRAGDVVVLRHPFRQDLLIVKRAVERRDGGWWVMGD 96 Query: 199 NC 200 N Sbjct: 97 NP 98 >gi|257792297|ref|YP_003182903.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317490218|ref|ZP_07948706.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] gi|257476194|gb|ACV56514.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316910712|gb|EFV32333.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 5/73 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + + I + + L+ LA ++ + K + G R PS E I K Sbjct: 1 MSQETRTFVGNRIRELRKSQKLSQQKLALMVNVERSYLAKIE-----GGKRNPSLECIEK 55 Query: 61 ILAATNETICQLL 73 I ++ + Sbjct: 56 ISKGLGLSLEEFF 68 >gi|229553416|ref|ZP_04442141.1| probable transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258538560|ref|YP_003173059.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|229313297|gb|EEN79270.1| probable transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257150236|emb|CAR89208.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] Length = 100 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+ + L+ LA K+G+ T+ + +R S E++ KI A Sbjct: 44 AVLEARQNAGLSQQELANKSGVPKTTIARIERGSNT------SIETLTKIANALG 92 >gi|162455328|ref|YP_001617695.1| putative HTH-type transcriptional regulator ydcN [Sorangium cellulosum 'So ce 56'] gi|161165910|emb|CAN97215.1| Putative HTH-type transcriptional regulator ydcN [Sorangium cellulosum 'So ce 56'] Length = 148 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ K++ AI + + H LT + A KA L T + +R R ++ Sbjct: 1 MSDALPKEVGRAIRVLRQLHGLTYAEFAEKARLSATYLRQVERGE-----RDLGLGALAL 55 Query: 61 ILAATNET 68 I N Sbjct: 56 IAQGLNCD 63 >gi|57652609|ref|YP_185312.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus COL] gi|87160419|ref|YP_493064.1| Cro/CI family transcriptional regulator-related protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194131|ref|YP_498920.1| hypothetical protein SAOUHSC_00331 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161508620|ref|YP_001574279.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142657|ref|ZP_03567150.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253730712|ref|ZP_04864877.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735091|ref|ZP_04869256.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|258453058|ref|ZP_05701051.1| transcriptional regulator [Staphylococcus aureus A5948] gi|262048913|ref|ZP_06021793.1| hypothetical protein SAD30_0759 [Staphylococcus aureus D30] gi|262052844|ref|ZP_06025029.1| hypothetical protein SA930_1142 [Staphylococcus aureus 930918-3] gi|282922321|ref|ZP_06330012.1| transcriptional regulator [Staphylococcus aureus A9765] gi|284023358|ref|ZP_06377756.1| Cro/CI family transcriptional regulator-related protein [Staphylococcus aureus subsp. aureus 132] gi|294849997|ref|ZP_06790735.1| transcriptional regulator [Staphylococcus aureus A9754] gi|304380314|ref|ZP_07363034.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286795|gb|AAW38889.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus COL] gi|87126393|gb|ABD20907.1| transcriptional regulator, Cro/CI family-related protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201689|gb|ABD29499.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160367429|gb|ABX28400.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725556|gb|EES94285.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726891|gb|EES95620.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257859268|gb|EEV82123.1| transcriptional regulator [Staphylococcus aureus A5948] gi|259159245|gb|EEW44304.1| hypothetical protein SA930_1142 [Staphylococcus aureus 930918-3] gi|259162985|gb|EEW47547.1| hypothetical protein SAD30_0759 [Staphylococcus aureus D30] gi|269939929|emb|CBI48301.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282593447|gb|EFB98442.1| transcriptional regulator [Staphylococcus aureus A9765] gi|294823131|gb|EFG39562.1| transcriptional regulator [Staphylococcus aureus A9754] gi|302750221|gb|ADL64398.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341295|gb|EFM07214.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198028|gb|EFU28360.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139343|gb|EFW31222.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142893|gb|EFW34689.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329313042|gb|AEB87455.1| Possible transcriptional regulator [Staphylococcus aureus subsp. aureus T0131] gi|329724264|gb|EGG60777.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] gi|329732630|gb|EGG68980.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 67 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R L + LA++AG+ + + +R PS + KI NET+ Sbjct: 3 NRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57 Query: 71 QLLDLPF 77 + + Sbjct: 58 TVFIIEE 64 >gi|331090843|ref|ZP_08339689.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399702|gb|EGG79364.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] Length = 179 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 16/139 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + NLT LA +A L ++ +R PS ++ IL Sbjct: 2 QIGQKLKGLRIAKNLTQEELADRAELSKGFISQLERDLT-----SPSISTLVDILQCLGT 56 Query: 68 TICQLLDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++ + + K P + + Sbjct: 57 SLKDFFQEESDEQIVFGNEDYFEKVDTELKNTVEWIIPNAQKNMMEPIRLTLQPGGSTYP 116 Query: 119 GVPEIRSPHNGIYAIQTQD 137 +P Y +Q Sbjct: 117 DLP--HEGEEFGYVLQGSI 133 >gi|329941544|ref|ZP_08290809.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] gi|329299261|gb|EGG43161.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] Length = 190 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 8/125 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS ++ KI A Sbjct: 9 QSLARNVRRWRAERGFTLDALAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIR 124 ++ L R + ++ +G G +G G W+ +P Sbjct: 64 VSLPTL-LDYEQGPRVRVVPADQAVRMWHSEAGGHGRLLAGTEAPGPLEMWDWRLMPGEH 122 Query: 125 SPHNG 129 SP + Sbjct: 123 SPSDP 127 >gi|301066025|ref|YP_003788048.1| double-stranded beta-helix-like protein [Lactobacillus casei str. Zhang] gi|300438432|gb|ADK18198.1| Double-stranded beta-helix related protein [Lactobacillus casei str. Zhang] Length = 179 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 42/176 (23%), Gaps = 17/176 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + R NLT L + L ++ + PS E+ F IL+ + Sbjct: 2 EIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQS-----SPSLETFFDILSVLGQ 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + D + + Y N+ V + Sbjct: 57 SPADFFREEPKDSLVYHED---DQVTYLDEEKGYRLKWLVPESNENEMEPVMIDFAAHGI 113 Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + L L+ G+ + + Sbjct: 114 FKTFEPSPAETFVYVVSGRVKL--------LLGEQTYVAKKGETIYFHATKQHQLV 161 >gi|291485886|dbj|BAI86961.1| hypothetical protein BSNT_05082 [Bacillus subtilis subsp. natto BEST195] Length = 132 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI A+ R+ T A++ G+ + ++ + + PS + I KI N Sbjct: 4 KKIGHAVKRLRTEKKKTVDEAAKEIGISQSYLSRIENNT-----QVPSLKVIEKIADYFN 58 Query: 67 ETICQLLDLPFSDGRTTEKKEK 88 L S T+ ++K Sbjct: 59 VHKSYLFFDEESLDSFTDPEKK 80 >gi|254792649|ref|YP_003077486.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] gi|254592049|gb|ACT71410.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] Length = 200 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + NLT + LA+++G+ +K +R PS + ++ A N Sbjct: 19 DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTS-----SPSATILSRLANALNI 73 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPE 122 T+ +L + + G + P G + +P Sbjct: 74 TLSKLFAELEMQQNSLVLLADQQQHWIDEE---TGITRWSLSPAGACPELIKVEIPP 127 >gi|229018544|ref|ZP_04175403.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273] gi|229024800|ref|ZP_04181236.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272] gi|228736511|gb|EEL87070.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272] gi|228742756|gb|EEL92897.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273] Length = 374 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/189 (10%), Positives = 50/189 (26%), Gaps = 14/189 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + +T LA G+ S +K + +P + + + N + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I +L+ + K F ++ + Sbjct: 61 IDELISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPL------LL 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187 + + + + L + D L+ + + ++++ Sbjct: 115 QMGLLFINHHMLTVDTDKRTKILEEAMYLFSRVQEE--SDDVSLVKEAVSFKATCYLILN 172 Query: 188 RRGRSIDLM 196 R + L+ Sbjct: 173 RPNEVLQLL 181 >gi|188581153|ref|YP_001924598.1| hypothetical protein Mpop_1900 [Methylobacterium populi BJ001] gi|179344651|gb|ACB80063.1| hypothetical protein Mpop_1900 [Methylobacterium populi BJ001] Length = 70 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 1/61 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + + + A +AG+ + R + R + + + Sbjct: 1 MTDLTFDDVRARLSAAIREAG-SQKAFAARAGVSAGFLSDVIRGRRDPGERVLAAIDLRR 59 Query: 61 I 61 + Sbjct: 60 V 60 >gi|168216166|ref|ZP_02641791.1| transcriptional regulator, XRE family [Clostridium perfringens NCTC 8239] gi|182381613|gb|EDT79092.1| transcriptional regulator, XRE family [Clostridium perfringens NCTC 8239] Length = 144 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I++ ++ LA K G+ P+ + ++ GR P+ E I KI + Sbjct: 4 GEYINKKRLEKGMSLRELAGKIGISPSYLSDIEK----GRRNAPNNEKIEKISEVLFSSK 59 Query: 70 CQLLDLPF 77 ++ L Sbjct: 60 DEIEKLHD 67 >gi|126740655|ref|ZP_01756341.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126718170|gb|EBA14886.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 138 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + + E +T + L+R+ G+ ++ ++ E R ST S Sbjct: 23 GDRVAAAREAAGMTQAELSRRMGIKKSTLTGWEQDLSEPRANKLSTLS 70 >gi|110641376|ref|YP_669106.1| transcriptional regulator [Escherichia coli 536] gi|191170900|ref|ZP_03032451.1| probable transcriptional regulator [Escherichia coli F11] gi|218689103|ref|YP_002397315.1| putative transcriptional regulator [Escherichia coli ED1a] gi|110342968|gb|ABG69205.1| probable transcriptional regulator [Escherichia coli 536] gi|190908632|gb|EDV68220.1| probable transcriptional regulator [Escherichia coli F11] gi|218426667|emb|CAR07498.1| conserved hypothetical protein , putative transcriptional regulator [Escherichia coli ED1a] gi|324015721|gb|EGB84940.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 60-1] Length = 194 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + NLT + LA+++G+ +K +R PS + ++ A N Sbjct: 13 DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTS-----SPSATILSRLANALNI 67 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPE 122 T+ +L + + G + P G + +P Sbjct: 68 TLSKLFAELEMQQNSLVLLADQQQHWIDEE---TGITRWSLSPAGACPELIKVEIPP 121 >gi|15830918|ref|NP_309691.1| hypothetical protein ECs1664 [Escherichia coli O157:H7 str. Sakai] gi|168756532|ref|ZP_02781539.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|168771061|ref|ZP_02796068.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|168782527|ref|ZP_02807534.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|168787669|ref|ZP_02812676.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|195938823|ref|ZP_03084205.1| hypothetical protein EscherichcoliO157_20767 [Escherichia coli O157:H7 str. EC4024] gi|208806950|ref|ZP_03249287.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815716|ref|ZP_03256895.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208822642|ref|ZP_03262961.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396624|ref|YP_002270109.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217328417|ref|ZP_03444499.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|261224908|ref|ZP_05939189.1| hypothetical protein EscherichiacoliO157_09974 [Escherichia coli O157:H7 str. FRIK2000] gi|261257236|ref|ZP_05949769.1| hypothetical protein EscherichiacoliO157EcO_15627 [Escherichia coli O157:H7 str. FRIK966] gi|291281508|ref|YP_003498326.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|13361128|dbj|BAB35087.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|188999971|gb|EDU68957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189356349|gb|EDU74768.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189360126|gb|EDU78545.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189372536|gb|EDU90952.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|208726751|gb|EDZ76352.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732364|gb|EDZ81052.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208738127|gb|EDZ85810.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158024|gb|ACI35457.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217318844|gb|EEC27270.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|290761381|gb|ADD55342.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|320638144|gb|EFX07905.1| hypothetical protein ECO5101_18657 [Escherichia coli O157:H7 str. G5101] gi|320643564|gb|EFX12729.1| hypothetical protein ECO9389_18000 [Escherichia coli O157:H- str. 493-89] gi|320648883|gb|EFX17507.1| hypothetical protein ECO2687_10168 [Escherichia coli O157:H- str. H 2687] gi|320654469|gb|EFX22513.1| hypothetical protein ECO7815_15353 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320664959|gb|EFX32089.1| hypothetical protein ECOSU61_14426 [Escherichia coli O157:H7 str. LSU-61] gi|326346440|gb|EGD70177.1| transcriptional regulator, XRE family [Escherichia coli O157:H7 str. 1125] Length = 194 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + NLT + LA+++G+ +K +R PS + ++ A N Sbjct: 13 DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTS-----SPSATILSRLANALNI 67 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPE 122 T+ +L + + G + P G + +P Sbjct: 68 TLSKLFAELEMQQNSLVLLADQQQHWIDEE---TGITRWSLSPAGACPELIKVEIPP 121 >gi|298369060|ref|ZP_06980378.1| repressor protein CI [Neisseria sp. oral taxon 014 str. F0314] gi|298283063|gb|EFI24550.1| repressor protein CI [Neisseria sp. oral taxon 014 str. F0314] Length = 247 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 Q + K +M P + D LI++S+ C ++ + G + K + + Sbjct: 148 PAQVFQFKMSYDNMSPTILENDFLIIDSSRIDVCDSKVYLVILNGVVHVKRVFYLLSNEV 207 Query: 194 DLM--SLNCC-YPVD---TVEMSDIEWIARIL 219 + S N YP +S + I +++ Sbjct: 208 CISNDSNNKMLYPDIVTNVSNISQLRIIGQVI 239 >gi|296877357|ref|ZP_06901397.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431877|gb|EFH17684.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 72 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ + + R L + LA+ AG+ + + +R PS KI + Sbjct: 5 KLKNRLKELRARDGLNQTELAKLAGISRQTISLLERDEYT-----PSIIIALKISQIFH 58 >gi|289168842|ref|YP_003447111.1| transcriptional regulator [Streptococcus mitis B6] gi|288908409|emb|CBJ23251.1| transcriptional regulator [Streptococcus mitis B6] Length = 141 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 5/89 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + L+ LA G+ + + + + E ++ ++ Sbjct: 1 MNRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKP-----EKAQQLADFFGVSV 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 LL + K+ E L Sbjct: 56 GYLLGYEEAKTLENILKDAEEYLEMTEDD 84 >gi|228924686|ref|ZP_04087872.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229180805|ref|ZP_04308142.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|229191815|ref|ZP_04318789.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228591689|gb|EEK49534.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228602642|gb|EEK60126.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228834985|gb|EEM80438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 157 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 5/88 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I I + ++ NLT LA K G+ + R+P + + K+ Sbjct: 14 NDVIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCF 68 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLL 93 + + LL + + K+ + Sbjct: 69 SVSADYLLGRSVTGEPNEQVTPKDEKDI 96 >gi|255531529|ref|YP_003091901.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344513|gb|ACU03839.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 121 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S K+I E I + +HNL+ + +A L +++++ + ++PS ++ +I Sbjct: 5 LSKKEIGERIKDLRTQHNLSQAFIANILNLSRSNYSQIELGN-----QYPSFNTLHEIAR 59 Query: 64 ATNETICQLLDLPFSDGRTTEK 85 ++T LL + T Sbjct: 60 YYSKTYDWLLHGTDTKAATENP 81 >gi|118592886|ref|ZP_01550274.1| DNA-binding protein, putative [Stappia aggregata IAM 12614] gi|118434420|gb|EAV41073.1| DNA-binding protein, putative [Stappia aggregata IAM 12614] Length = 191 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/182 (8%), Positives = 42/182 (23%), Gaps = 29/182 (15%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + E H + LA++AG+ ++ + I S ++ ++L Sbjct: 13 DVGLRLRAIREAHGYSQRELAKRAGVTNGFISQLEAAKINT-----SLSALKRVLDGIPI 67 Query: 68 TICQLLDLPFSDGRTT------------------------EKKEKEIPLLYFPPSGSGGF 103 + + E ++ + P G Sbjct: 68 GLSEFFAYEPERQEQVFFGADELTEIGKGNISYRQVGNSLFGHELQMLYEVYEPGADTGR 127 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 G E+ K+ R +++++ Sbjct: 128 VMLSHEGEEAGIVIEGRLEVTVGEQRKILGPGDAYLFKSTTPHRFKALRNERCVVVSACT 187 Query: 164 QV 165 Sbjct: 188 PP 189 >gi|303233322|ref|ZP_07319992.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] gi|302480567|gb|EFL43657.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] Length = 328 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +++ + LA K G+ S +K + G P E I + + Sbjct: 3 LADKILELRKQNGWSQEELADKLGVSRQSVSKWE-----GAQSIPDMERIIALSRLFGVS 57 >gi|295103897|emb|CBL01441.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 65 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++T LA AG+ + N ++ SI KIL T + + Sbjct: 7 LKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCR--SICKILDKTLDELFW 63 >gi|262200774|ref|YP_003271982.1| transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084121|gb|ACY20089.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 141 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 5/90 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I ++ LA +AG+ ++ +R R PS + + +I Sbjct: 31 QDIGAFIRSQRVAAEVSLRQLAERAGVSNPYLSQIERG-----LRKPSADVLAQIAKGLR 85 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L ++ + Sbjct: 86 VSAEVLYVRAGILEERPASPVRDALIADDS 115 >gi|315500078|ref|YP_004088881.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315418090|gb|ADU14730.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 202 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 67/214 (31%), Gaps = 29/214 (13%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +A+ ++ R L+ A AG ++ + + + S K++ A ++ Sbjct: 8 GQALAQLRMRARLSQDKAAEAAGTSQPTWARYESGDSRAFLDRLAVRS--KVVRALGFSL 65 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L E + + + + + G S F + Sbjct: 66 RDL-----------EAEAELLAIDMPYGTPEGSQGFSAGFSASGGVDLAPFHRPGLQQ-- 112 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + Q + P R G + I ++ G+ ++++ R G + + + + Sbjct: 113 ----------VRIQTDELSPYLRAGSLAIYDTERLPLPGEGVIVRLRDGRSLPRFYVRQA 162 Query: 190 GR-SIDLMSLNCCYPVDTVE---MSDIEWIARIL 219 ++ ++ M+DI I I+ Sbjct: 163 AELWVEYWVAEGDAHRRVIQSLNMADITGIYPIV 196 >gi|62178909|ref|YP_215326.1| regulatory protein Cro (antirepressor) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168239077|ref|ZP_02664135.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734385|ref|YP_002113584.1| hypothetical protein SeSA_A0617 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|224583087|ref|YP_002636885.1| regulatory protein cro (Antirepressor) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126542|gb|AAX64245.1| regulatory protein cro (Antirepressor) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194709887|gb|ACF89108.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288184|gb|EDY27569.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|224467614|gb|ACN45444.1| regulatory protein cro (Antirepressor) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713364|gb|EFZ04935.1| Regulatory protein cro [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 71 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + + +T + LA KAG+ S + + + R R+ + ++ A Sbjct: 2 ETISQRLKQKRTELKMTQAQLAEKAGMKQQSIQQIESGETK-RPRF-----LLELATALQ 55 Query: 67 ETICQ 71 Sbjct: 56 CDPSW 60 >gi|15807441|ref|NP_296174.1| PbsX family transcriptional regulator [Deinococcus radiodurans R1] gi|6460274|gb|AAF11998.1|AE002075_2 transcriptional regulator, PbsX family [Deinococcus radiodurans R1] Length = 64 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + HNLT + LA K + + N + + PS FK+ I Sbjct: 3 NRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYD-----PSLPLAFKLARLFGLRIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DIFQDEG 64 >gi|330683978|gb|EGG95740.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 179 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + NLT LA + L ++ + PS E+ IL Sbjct: 2 EIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNA-----SPSMETFLNILEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + +K+E+ I Y Sbjct: 57 SASDFFKETEQQKVIYKKEEQIIYDEYD 84 >gi|256396806|ref|YP_003118370.1| phage repressor [Catenulispora acidiphila DSM 44928] gi|256363032|gb|ACU76529.1| putative phage repressor [Catenulispora acidiphila DSM 44928] Length = 121 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKP--RTGDIVA-KVLISRRGRSIDL 195 + SM+P R GD +++ A + GD ++ + R G+++ K R G L Sbjct: 19 RVTGASMVPALRDGDFVLVRRARPGRIRPGDVVVARHPARAGELLIIKRAARREGAGWWL 78 Query: 196 MSLNC 200 +S N Sbjct: 79 LSDNE 83 >gi|261823778|ref|YP_003261884.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607791|gb|ACX90277.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 188 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/107 (10%), Positives = 32/107 (29%), Gaps = 5/107 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ ++I + + + + + + A + G+ + +R P+ +++K Sbjct: 1 MSDELTRRIGDTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGES-----SPTVATLWK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 I N ++ +D T + Sbjct: 56 IATGLNVAFSTFIEPTLADEGVTYRSGAGSTFSESVAGMRAVPLFPY 102 >gi|166030732|ref|ZP_02233561.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] gi|166029524|gb|EDR48281.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] Length = 222 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 8/176 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + LT L K + + +K + +P + + ++ Sbjct: 8 GTFIAECRKEKGLTQKALGEKLNVTDRAVSKWETGRS-----FPDVAILEDLCQELGISV 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN- 128 +LL + +++ ++I + + G+ + + VP + Sbjct: 63 SELLAGKKIEAEHYQEETEKILVSSISKAQMYGYQIALYGLLLAVMLLIYVPVFILKNRL 122 Query: 129 --GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 GIY I + + N ++ G + D Sbjct: 123 NMGIYMIIAVSVIVFVSMVYLNHKIPGKEFRNSNIWLEGFRGGIVFAVIMGMDFAV 178 >gi|157363615|ref|YP_001470382.1| cupin 2 domain-containing protein [Thermotoga lettingae TMO] gi|157314219|gb|ABV33318.1| Cupin 2 conserved barrel domain protein [Thermotoga lettingae TMO] Length = 177 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I R+ LT LA + L + ++ + + +++ KIL A Sbjct: 2 NIGGKIKRLRLSRGLTQEELAMRTDLSRSFISQLESNKT-----SLAVDTLEKILRALGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + +K+++ Sbjct: 57 DLKAFFSEEEEAKIVFKKEDRIPVY 81 >gi|157362961|ref|YP_001469728.1| XRE family transcriptional regulator [Thermotoga lettingae TMO] gi|157313565|gb|ABV32664.1| putative transcriptional regulator, XRE family [Thermotoga lettingae TMO] Length = 131 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 +I + ++HNLT LA+K G+ + +K + R Sbjct: 34 QIGGQLMAYRKKHNLTQKDLAKKLGISQSMVSKIETGEKNISIR 77 >gi|134102747|ref|YP_001108408.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915370|emb|CAM05483.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 187 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 7/133 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + T + L++ G+ ++ ++ + R PS E + I A Sbjct: 5 VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQ-----RRPSLELLLPIAQAHQVP 59 Query: 69 ICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P K + + P + G + G + P + Sbjct: 60 LDELVGAPPVGDPRVRLKPIRRGDMTVVPLTQQPGGLQAFKMIMGAGRSEPD-PRTHEGY 118 Query: 128 NGIYAIQTQDTRH 140 +Y + Sbjct: 119 EWLYVLSGNLRLV 131 >gi|332365448|gb|EGJ43209.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 168 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 37/145 (25%), Gaps = 5/145 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL ++ Y+ S GF+ + P Sbjct: 57 TTDYLLLEDGDKPEIKSILSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152 + ++ + Sbjct: 117 KFSALVWLTFFLLIASAMAINKALK 141 >gi|328885628|emb|CCA58867.1| Transcriptional regulator, XRE family [Streptomyces venezuelae ATCC 10712] Length = 476 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 5/99 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R+ + LAR GL + N+ + R + + +I Sbjct: 15 LRRLRRERGMNQVELARALGLSTSYLNQIEH-----SQRPLTAPVLLRIAEVFGVDPEFF 69 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + T + P + + P Sbjct: 70 SEAEEERLATDLRAALGDEACGAPIAQDEIADVARDHPE 108 >gi|319937023|ref|ZP_08011433.1| hypothetical protein HMPREF9488_02267 [Coprobacillus sp. 29_1] gi|319807959|gb|EFW04538.1| hypothetical protein HMPREF9488_02267 [Coprobacillus sp. 29_1] Length = 228 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 32/227 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +F+ K++ E + NLT L ++ G++ ++ + + G++ + R + + L Sbjct: 6 TFTAKQVGERVKERRTELNLTMPELGKRVGVNKSTIQRYEADGVDPK-RTMIINGLAEAL 64 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYF----------------------PPSGS 100 T E + L + D RT ++ E + + Sbjct: 65 LTTPEWLTGLSEDKEYDSRTLCARDMEEHIKKYLDTVSSVVKGEPHQQLLTTFLGKMIDL 124 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--- 157 + + V E YAI+++ + M Sbjct: 125 YTVMAYHFADATAEVDRVAEDEGLKQSLRRYAIESRAIMERVYRKEMELPIEDMKQFLDG 184 Query: 158 ---ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 I + L + RG L S N Sbjct: 185 ILHIYDEGRTAVKMGDLFGIVTAAEERVAEKEKFRGS---LTSENDD 228 >gi|220928331|ref|YP_002505240.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998659|gb|ACL75260.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 179 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E I ++ ++ LT LA + L ++ +R PS ++ IL + Sbjct: 2 KIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLT-----SPSIATLMDILESLGT 56 Query: 68 TICQLLD 74 I + Sbjct: 57 NIKDFFN 63 >gi|242279628|ref|YP_002991757.1| XRE family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122522|gb|ACS80218.1| transcriptional regulator, XRE family [Desulfovibrio salexigens DSM 2638] Length = 294 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 6/68 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S K+I + + + +A K G+ + + ++ P E++ Sbjct: 1 MNELSPKEIGQRLKAFRLGSKYSTEEIAAKIGISRAALYRYEKGDP------PKLETLES 54 Query: 61 ILAATNET 68 I + Sbjct: 55 IADLLGVS 62 >gi|327467942|gb|EGF13432.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 167 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E + ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T LL ++ Y+ S GF+ Sbjct: 57 TTDYLLLEDSDKPEIKPVLSEDEKNRYYKEVKSYGFWQVIYI 98 >gi|262373689|ref|ZP_06066967.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] gi|262311442|gb|EEY92528.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] Length = 183 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 15/144 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I +H L+ LA +AG+ + + + S + I A + Sbjct: 11 VGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVN-----ISLTKLDAIANALDVN 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--------GFFDSGVFPTGNKWNTVGV 120 QL+ P K + + G V Sbjct: 66 FKQLVTAPELVDSAVVKTLAWQGTHLESQATLHASIPARTQVELWTWTLAVG--ETYVAE 123 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 P+ + IY I+ + + Sbjct: 124 PDQQGWQELIYVIEGELSLEFASG 147 >gi|212697019|ref|ZP_03305147.1| hypothetical protein ANHYDRO_01584 [Anaerococcus hydrogenalis DSM 7454] gi|212675989|gb|EEB35596.1| hypothetical protein ANHYDRO_01584 [Anaerococcus hydrogenalis DSM 7454] Length = 67 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + L+ LA+ GL S + + PS E+ +KI ++ Sbjct: 4 EIENKIKEFRKEKGLSQHKLAKMVGLKRRSIMAYEN-----KTISPSLETAYKICKVLDK 58 Query: 68 TICQLLDLP 76 I ++ Sbjct: 59 DIKEVFIFK 67 >gi|300765733|ref|ZP_07075710.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|300513606|gb|EFK40676.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] Length = 158 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/144 (9%), Positives = 37/144 (25%), Gaps = 12/144 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ + LA + G ++ R P +++ KI N + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGT-----REPDYQTLLKIAEFFNVST- 57 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + + + + EI S + Sbjct: 58 DYLLGRDDNNLAETIAAHIDSNASEEDIKEILAYIEEKRKEHVNEEEINITEIASKEDDA 117 Query: 131 ---YAIQTQDT---RHKTQDTSML 148 + + +D + + + Sbjct: 118 VDKFVEENEDFKAVAARVMNDAEA 141 >gi|262283651|ref|ZP_06061416.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260708|gb|EEY79409.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 167 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 T LL ++ Y+ S GF+ Sbjct: 57 TTDYLLLEDSDKPEIKPVLSEDEKDRYYQEVKSYGFWQVLYIFVSA 102 >gi|228943343|ref|ZP_04105795.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228816323|gb|EEM62496.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 157 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + ++ NLT LA K G+ + R+P + + K+ + + Sbjct: 17 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCFSVS 71 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 LL +D + K+ + Sbjct: 72 ADYLLGRSVTDEPNEQVTPKDEKDI 96 >gi|226313439|ref|YP_002773333.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226096387|dbj|BAH44829.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 185 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 7/152 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I + + T +A K GL ++ +R + PS +S++KI A Sbjct: 6 ETIGHKIRMIRKERGFTLEIMAGKTGLSKGLLSQVERGISQ-----PSLDSLWKITKALE 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I + + +K L++ +G+ G +P + Sbjct: 61 SPIIHFFEDIDQKQVHVTRLQKRRQLVFPESTGTYSLLSMGGSAKLGMLEVRLMPGEMAV 120 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 + + + S+ + + ++ Sbjct: 121 DKFVQSEGEECF--TVITGSVTARFNDEEHVL 150 >gi|182437780|ref|YP_001825499.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778414|ref|ZP_08237679.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178466296|dbj|BAG20816.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658747|gb|EGE43593.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 162 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E + L+ LA G+ ++ +R R PS + + + Sbjct: 1 MASLNVGNLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERG-----LRKPSADVLQQ 55 Query: 61 ILAATNET 68 + A + Sbjct: 56 VAKALRIS 63 >gi|324989664|gb|EGC21608.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 168 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 T LL ++ Y+ S GF+ Sbjct: 57 TTDYLLLEDSDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSA 102 >gi|325107714|ref|YP_004268782.1| hypothetical protein Plabr_1144 [Planctomyces brasiliensis DSM 5305] gi|324967982|gb|ADY58760.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM 5305] Length = 109 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + NL+ LA + G++ T +K + ++ ++P E I K+ A + Sbjct: 2 RFGERLRELRQAKNLSQRDLAEQVGVNFTYISKIENEKLD-FAQFPGEELIRKLAKALDA 60 Query: 68 TICQ 71 + Sbjct: 61 DEDE 64 >gi|307301170|ref|ZP_07580932.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307321071|ref|ZP_07600476.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306893243|gb|EFN24024.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903626|gb|EFN34213.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 192 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 5/112 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + +LT LA ++G+ ++ +R P+ + + K+ +A T+ Sbjct: 15 RLRELRMARDLTLDDLAGRSGVSRAMISRIERGEA-----SPTAQLLAKLCSALGTTLSA 69 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L S+ + ++ + V P Sbjct: 70 LFASERSEASPLARHAEQRLWRDPESGYLRRSVSPEGVGSPVDIVEVEFPPG 121 >gi|291516023|emb|CBK65233.1| Helix-turn-helix [Alistipes shahii WAL 8301] Length = 69 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ AI + +T LA AG+ + K +R P+ E + KIL Sbjct: 2 DKVGNAIKERRKILKITQRTLAELAGVGINTLTKIERGEGN-----PTIEVLEKILDTLG 56 >gi|257892810|ref|ZP_05672463.1| predicted protein [Enterococcus faecium 1,231,408] gi|257829189|gb|EEV55796.1| predicted protein [Enterococcus faecium 1,231,408] Length = 163 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++ + H T LA+K + + + + +P E+++ + +T Sbjct: 23 LKQLRKEHGHTQEELAKKLAITRQTVSNWENGRS-----FPDHENVYCLAKLYGQT 73 >gi|257886598|ref|ZP_05666251.1| predicted protein [Enterococcus faecium 1,141,733] gi|257822652|gb|EEV49584.1| predicted protein [Enterococcus faecium 1,141,733] Length = 149 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++ + H T LA+K + + + + +P E+++ + +T Sbjct: 9 LKQLRKEHGHTQEELAKKLAITRQTVSNWENGRS-----FPDHENVYCLAKLYGQT 59 >gi|170698980|ref|ZP_02890038.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170136087|gb|EDT04357.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 227 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 6/177 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + R+ L+ LAR +G+ + + PS + + KI Sbjct: 29 DLLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIA 83 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AA ++ L +G E+ ++ S P +++ + + Sbjct: 84 AALKVSVAAFLRRHAVNGFEHLAAERAARVVSSSGRFSARALYPEGEPAAAEFHELRIAP 143 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + A + ++ L+ V D+ GD Sbjct: 144 LHTEPGTRRA-PGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199 >gi|169346977|ref|ZP_02865925.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297036|gb|EDS79160.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 180 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 2/101 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ ++ LT LA G+ + + + + + E++ L ++ Sbjct: 3 IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALATALKLDLKS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 L +E E S Sbjct: 61 FFDDTLLEEDYYLKPLNEELEDERFEEIEVLSENEIVEKQI 101 >gi|167747593|ref|ZP_02419720.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662] gi|239623031|ref|ZP_04666062.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652955|gb|EDR97084.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662] gi|239522610|gb|EEQ62476.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 120 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ I + I + E T LA +AG+ +K + R S ES +L Sbjct: 1 MVNNFNIAQNIRTLREERGYTIEKLAERAGVSANHMSKVENG-----LRNLSMESYLNVL 55 Query: 63 AATN 66 A N Sbjct: 56 EALN 59 >gi|166033316|ref|ZP_02236145.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] gi|166027673|gb|EDR46430.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S++K + + ++ NLT LA K + + +K +R P+ + Sbjct: 8 MYQISNEKFGLFVTELRKKKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 62 Query: 61 ILAATNETICQ 71 I + T+ + Sbjct: 63 IADILDVTVTE 73 >gi|163793593|ref|ZP_02187568.1| putative transcriptional regulatory protein [alpha proteobacterium BAL199] gi|159181395|gb|EDP65910.1| putative transcriptional regulatory protein [alpha proteobacterium BAL199] Length = 218 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 16/173 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I +AI +T LA + GL + ++ +R + S ++ +I A Sbjct: 9 QRIGDAIRDRRTSRRMTLGDLAARCGLSVSFLSRVERGHAQS-----SVGNLIRIADALG 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEI 123 TI L+ P + + G+ + V G T+ Sbjct: 64 GTIHDLIGPPDATTADHGFAVFRSAESMPRAIPATGYRWTPVSTGGAGRAIEATLLELSA 123 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + +A ++ + ++ + GD + ++ Sbjct: 124 AGSADTRFAHPGEEICFVLEGRV--------RFVVGERTTLLEPGDAIHLRSD 168 >gi|134282471|ref|ZP_01769175.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167723927|ref|ZP_02407163.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|237508582|ref|ZP_04521297.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|134246028|gb|EBA46118.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|235000787|gb|EEP50211.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 94 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + AI ++ E + LA AGL+ + + +R S ++ K Sbjct: 1 MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54 Query: 61 ILAATN 66 + A Sbjct: 55 LARAFG 60 >gi|89072606|ref|ZP_01159178.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89051710|gb|EAR57163.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 213 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 54/215 (25%), Gaps = 12/215 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I R+A+ ++ L L + ++ R + KI N + Sbjct: 4 LERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRE-----LDKIADTLNTS- 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + D T L F N ++V V R+ Sbjct: 58 IGYILTGQVDTGTQATTTISTELDSAATCTYIPVIHRKDFSAYNDGSSVEVISKRAIPQ- 116 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + + ++ G + + R + + Sbjct: 117 -HLEREECLGLLIDNENISQCAPVGSYALATKNADYRPKQPVFASVRGSEPDFYHMTQLA 175 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221 + S +P V + + I+ WA Sbjct: 176 DGVVFSTSQ-PDFPNLFVNNDEFQIHGYIIQSDWA 209 >gi|108804104|ref|YP_644041.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765347|gb|ABG04229.1| transcriptional regulator, XRE family with cupin sensor [Rubrobacter xylanophilus DSM 9941] Length = 203 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 43/136 (31%), Gaps = 5/136 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + LT GLA ++G+ +K +R + P+ ++ Sbjct: 16 RVGERVRMLRRERGLTLEGLAGRSGVSRAMISKVERGE-----KVPTLVVAARLAEGLGV 70 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ +L ++E+ + + G G ++ +PE + Sbjct: 71 SLSELAGERERRRVVVVRREERMTMRDPRTGFERQLLSPGFGGRGVEFIRNVIPEGSTSG 130 Query: 128 NGIYAIQTQDTRHKTQ 143 + + Sbjct: 131 EFPPHRPGVEEYLVVE 146 >gi|312868248|ref|ZP_07728448.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311095993|gb|EFQ54237.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 115 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 E + + + LT +A K G+ ++ +R + + + KIL Sbjct: 5 ERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIK--KPTQDNLVKLSKIL 54 >gi|303326025|ref|ZP_07356468.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302863941|gb|EFL86872.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 76 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI-ARIL 219 A G+ I G+IV + L+ L + N YP + ++ EWI R+ Sbjct: 12 RADCPASGELFAITLPHGEIVLRRLLWEED-YFRLCAENPAYPDRRIRLARTEWILGRLA 70 Query: 220 WASQ 223 W Q Sbjct: 71 WVMQ 74 >gi|299536270|ref|ZP_07049583.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] gi|298728256|gb|EFI68818.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] Length = 182 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 44/137 (32%), Gaps = 5/137 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I +M +++ ++ LA + L + +K + PS ++ KI + Sbjct: 5 EVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKAT-----PSLVTLSKIAEIFDV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + DG + K++ + G + N ++ + + Sbjct: 60 PMAWFVIQDQFDGISIVSKKERHETVETNELGYQYELLANKSYMSNINPSIVTVHNGAEN 119 Query: 128 NGIYAIQTQDTRHKTQD 144 Y + + Sbjct: 120 LAPYTHDNDEFIYVISG 136 >gi|288921266|ref|ZP_06415550.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288347356|gb|EFC81649.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 490 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 4/91 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + H LT LA G D + +K + GR ++ I + Sbjct: 20 IGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVE----SGRRAIHDISTLRHIARNLGLS 75 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 + P + + + S Sbjct: 76 PEDVGLAPGGLADRRREPPRGSTVEKVAGSQ 106 >gi|317050561|ref|YP_004111677.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945645|gb|ADU65121.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 104 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KI E + + + LT + + + G+ + +R +G R + E + K L Sbjct: 3 KILEQLRQRRKELGLTQAQMMLRVGMSRQ---QYQRLESKGNPRLDNLELLAKGLK 55 >gi|228949735|ref|ZP_04111960.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809949|gb|EEM56345.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 142 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + ++ NLT LA K G+ + R+P + + K+ + + Sbjct: 2 IGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCFSIS 56 >gi|324992649|gb|EGC24570.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995822|gb|EGC27733.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK678] gi|327460052|gb|EGF06391.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1] gi|327488642|gb|EGF20442.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 167 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 5/145 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E + ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL ++ Y+ S GF+ + P Sbjct: 57 TTDYLLLEEGDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFISALAIFLFFAGSSFPA 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152 + ++ + Sbjct: 117 KFTALVWLTFFLLIASAMAINKALK 141 >gi|320547844|ref|ZP_08042128.1| cro/CI family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447604|gb|EFW88363.1| cro/CI family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 65 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + + ++ + LA G+ + ++ S E KI TI ++ Sbjct: 5 IQELRKANKVSQAELAEALGVTRQTIISLEKGRYNA-----SLELAHKIAKYFGMTIEEI 59 Query: 73 LDLPF 77 Sbjct: 60 FIFDE 64 >gi|319652450|ref|ZP_08006566.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317395912|gb|EFV76634.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + +++ + + LAR A + P+ ++ +R + + K L Sbjct: 36 DIGKKVEKFRKEKGYSSRELARIAEITPSMLSQIERGIANPSIQTLKV--LAKALDVPTF 93 Query: 68 TI 69 + Sbjct: 94 SF 95 >gi|303242127|ref|ZP_07328617.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590314|gb|EFL60072.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 196 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ E + + LA G+ + + + R PS + K+ N + Sbjct: 13 QRIKQLREENKINQHQLAEILGVKNQTISNYEAGE-----REPSYGVLLKLADYFNVS 65 >gi|228918433|ref|ZP_04081881.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841238|gb|EEM86432.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I + ++ NLT LA K G+ + R+P + + K+ Sbjct: 2 IGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCF 53 >gi|225874194|ref|YP_002755653.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793366|gb|ACO33456.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] Length = 260 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 59/181 (32%), Gaps = 17/181 (9%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S K+I E I R+ + ++ L R GL + ++ + + R ++ +I Sbjct: 24 SEKRIGERIKRLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLR-----NLARIAMV 78 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----WNTVGV 120 ++ + + KK++ + L FF+S + ++ + V Sbjct: 79 FSKDLSYFFETEPHTLFRVHKKKERVRLPQTGVDDPTYFFESLGYMVPDRMLDPYYAEFV 138 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 P + + + + + G+ L + + GD + T Sbjct: 139 PLKKGTEVRAHVHPGFEFLYVISG---ELEIKHGEKLHV-----LEGGDGVYFDASTPHA 190 Query: 181 V 181 Sbjct: 191 Y 191 >gi|255658093|ref|ZP_05403502.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849858|gb|EEX69865.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 143 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 3/120 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + +R L+ + +AR G+ T++NK + + + ++ + + I Sbjct: 6 QRLRALRKREGLSQTEVARILGITRTAYNKYESGASAPSRK---LRELAQLYHVSTDYIL 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 D R + + Y S G + V S + Sbjct: 63 GEEDALAEKLREADARTSSHLRKYLDLSDEGKDIVDITLDAVYARESNDVSSTESSRPRV 122 >gi|182419849|ref|ZP_02951089.1| putative phage repressor [Clostridium butyricum 5521] gi|237666894|ref|ZP_04526879.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376397|gb|EDT73979.1| putative phage repressor [Clostridium butyricum 5521] gi|237658093|gb|EEP55648.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 156 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ++ NLT + LA+ + P+S + R S E + KI A N + Sbjct: 3 IGARIRTSRKKANLTQAELAKLIDVSPSSIRMYE-----TNKRNVSLEILKKISTALNIS 57 Query: 69 ICQ 71 I Sbjct: 58 ISD 60 >gi|153812273|ref|ZP_01964941.1| hypothetical protein RUMOBE_02672 [Ruminococcus obeum ATCC 29174] gi|149831680|gb|EDM86767.1| hypothetical protein RUMOBE_02672 [Ruminococcus obeum ATCC 29174] Length = 493 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 29/86 (33%), Gaps = 5/86 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ E + + ++T LA G++ + ++ ++ ++ PS + Sbjct: 1 MKKLSMTRLAELVSGKRKEKSMTQQELADATGINRSLLSRLEK-----KDFIPSIPQLES 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86 + + + + Sbjct: 56 LGECLGFDPDEAFTEQSASRLPSPSP 81 >gi|54298351|ref|YP_124720.1| hypothetical protein lpp2410 [Legionella pneumophila str. Paris] gi|53752136|emb|CAH13563.1| hypothetical protein lpp2410 [Legionella pneumophila str. Paris] Length = 326 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/185 (10%), Positives = 56/185 (30%), Gaps = 7/185 (3%) Query: 11 EAIDRMAER------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 A + + ++ ++ LAR L ++ + +G E R + +T S ++L Sbjct: 29 RASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGL 88 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + + + K + G+ ++ + + + Sbjct: 89 DEHSFNRKVGYATTFCDLAKHKI-FDVVEGRSEKDLEGYLNTLEGKDKVQVVCIDLSSSY 147 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y + +L + ++ ++ G ++ ++ K Sbjct: 148 RKLIRRYFPNAMIVADRFHVIRLLNQFCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKR 207 Query: 185 LISRR 189 L R Sbjct: 208 LNRRE 212 >gi|302561948|ref|ZP_07314290.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302479566|gb|EFL42659.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 191 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/135 (11%), Positives = 44/135 (32%), Gaps = 8/135 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ + +T + L+ G+ ++ ++ + R PS E + I A Sbjct: 9 EVGPRLRRIRKEREVTLAALSEATGISVSTLSRLESG-----LRKPSLELLLPIAQAHQV 63 Query: 68 TICQLL--DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +L+ + + ++P + G + + P Sbjct: 64 PLDELVGAPPVGDPRIRASEPIRRHGRTHWPLTRQPGGLQAYKVLEPKRRLE-PEPRTHE 122 Query: 126 PHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 123 GYEWVYVLSGKLRLV 137 >gi|284050806|ref|ZP_06381016.1| hypothetical protein AplaP_04959 [Arthrospira platensis str. Paraca] Length = 145 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 22/49 (44%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + I + + ++ E L+ + LA+ G+ P + N+ + + + Sbjct: 9 QDIPQLLRQLREDLELSQAELAQFLGVSPQTINRWENGHSQPSAISINL 57 >gi|258424598|ref|ZP_05687475.1| transcriptional regulator [Staphylococcus aureus A9635] gi|257845193|gb|EEV69230.1| transcriptional regulator [Staphylococcus aureus A9635] Length = 67 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R L + LA++AG+ + + +R PS + KI NET+ Sbjct: 3 NRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57 Query: 71 QLLDLPF 77 + + Sbjct: 58 TIFIIEE 64 >gi|229101445|ref|ZP_04232187.1| hypothetical protein bcere0019_6220 [Bacillus cereus Rock3-28] gi|228681977|gb|EEL36112.1| hypothetical protein bcere0019_6220 [Bacillus cereus Rock3-28] Length = 75 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + I + + R N + S LA K G+ + ++ Sbjct: 1 MVKLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41 >gi|225390253|ref|ZP_03759977.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] gi|225043678|gb|EEG53924.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] Length = 195 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 44/139 (31%), Gaps = 6/139 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + + I R+ E L+ L++ +G+ + + +R G P+ +++KI Sbjct: 17 NQIVAKNIKRLREERKLSMDELSKLSGVSKSMLAQIERGGGN-----PTISTLWKISNGM 71 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 L P S + + + L + F + + + E Sbjct: 72 KVPFDALTVRPKSPYELVKTSDLQPLLEDGGKVKNYSIFPDDENRRFAVY-YLELEEGSY 130 Query: 126 PHNGIYAIQTQDTRHKTQD 144 + + + Sbjct: 131 WESEPHLKGAAEFITIFSG 149 >gi|126700771|ref|YP_001089668.1| putative phage DNA-binding protein [Clostridium difficile 630] gi|115252208|emb|CAJ70047.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 253 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + ++ ++ LT LA +G+ + + R PS +++ K+ A Sbjct: 2 QIGKNLKKIRKQKELTQIQLAEISGISRNALINYEND-----KRIPSIDTLSKLAKALKI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 ++ T E + L+ S F Sbjct: 57 EKTIFYFDIENEVMTNEDVLYLLQSLFPEEYYSFDEF 93 >gi|111019098|ref|YP_702070.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110818628|gb|ABG93912.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 168 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA+ AG+ ++ +R R PS E + +I Sbjct: 25 DIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERG-----LRKPSAEVLGQIAKGLRV 79 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 + L + + Sbjct: 80 SSEVLYVQAGYLEQRPHGPLR 100 >gi|257076425|ref|ZP_05570786.1| transcriptional regulatory protein [Ferroplasma acidarmanus fer1] Length = 192 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +M + ++ LAR +G+ + + ++ I P+ + + KI N + Sbjct: 8 LRKMRKSLGISQKELARISGVSQSYIARLEKGEIN-----PAYDKVRKIFEYLNNS 58 >gi|56695338|ref|YP_165686.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677075|gb|AAV93741.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 193 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 9/139 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + LT LA GL ++ +R + PS ++ I A Sbjct: 13 IGTRMRELRKARGLTLKQLAAATGLSIGYLSQLERQAAD-----PSVRALNVISTALGVG 67 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125 I P + S G D + P + + Sbjct: 68 INWFFPDPDTVSDPE-ADLVVRADRRRTLRFSSGVRDELISPNLSGQLELIVTTFDPGAG 126 Query: 126 PHNGIYAIQTQDTRHKTQD 144 +YA + ++ + Sbjct: 127 SGAELYAHRGEEAGFIVEG 145 >gi|291520506|emb|CBK75727.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 97 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + +L+ + LA + G + K + IE PS + +I N Sbjct: 6 DIGNRIKQARKAQHLSQTELANRLGKTMRTVQKYESGEIE-----PSIGILNEIANILNI 60 Query: 68 TICQ 71 + + Sbjct: 61 SPAE 64 >gi|284041803|ref|YP_003392143.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946024|gb|ADB48768.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 201 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/123 (8%), Positives = 31/123 (25%), Gaps = 6/123 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK 60 + + + + + L+ AG+ + +R R + + Sbjct: 8 EALARTVRAARRQRGWSQDQLSAHAGISKGALVALERAETNPNLSTLCRIGDALDLNAAQ 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L +++D ++ + P G + V Sbjct: 68 LLEQRPTNGLRIVDAAEVAPLWRGPAGGTAAVVLVTGGTAPVELWRWRLPAGEFYENVPY 127 Query: 121 PEI 123 P+ Sbjct: 128 PDG 130 >gi|299822631|ref|ZP_07054517.1| signal peptidase I [Listeria grayi DSM 20601] gi|299816160|gb|EFI83398.1| signal peptidase I [Listeria grayi DSM 20601] Length = 186 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 7/78 (8%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG--DIVAKVLISRRGRSIDLMS 197 SM P G+ L +N + D ++ + K +I G I+ + Sbjct: 39 VTVNGHSMDPTLHDGEHLFINKVTKPKRFDIIVFPAPDDTKEEYIKRVIGLPGDEIEYKA 98 Query: 198 L----N-CCYPVDTVEMS 210 N YP ++ Sbjct: 99 DQLYINGKKYPEKYLDSE 116 >gi|217077472|ref|YP_002335190.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] gi|217037327|gb|ACJ75849.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] Length = 177 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 45/169 (26%), Gaps = 14/169 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + T LA + L + ++ + + PS +++ +IL Sbjct: 2 KLGKKIKTLRIARGYTQEELADRCDLSRSFISQLENDQV-----SPSIDTLERILRVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K + +P+ G + + + Sbjct: 57 DLKTFFSTDKRQEKIVFKASERVPMYLDEYGIKGYILMDNIEDKSIDPKLIELAPGA-ET 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + + L ++ +VN GD Sbjct: 116 EEEDPHEGDEFGYVISGKLEL--------ILDGKVYKVNQGDCFYYCSD 156 >gi|18978166|ref|NP_579523.1| inosine-5'-monophosphate dehydrogenase related protein I [Pyrococcus furiosus DSM 3638] gi|18893973|gb|AAL81918.1| inosine-5'-monophosphate dehydrogenase related protein I [Pyrococcus furiosus DSM 3638] Length = 187 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 36/116 (31%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R+ + +T LARKAG+ K + ++ R + I + + Sbjct: 13 IRRIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNKILRALIECQKAKITAKA 72 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + T K +++ L + S G+ + V + Sbjct: 73 IMSSPIIYVTPTDKVEKVVKLMKKYNISQVPVIEKDRVVGSITERILVRRSLEEED 128 >gi|56963615|ref|YP_175346.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909858|dbj|BAD64385.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 106 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + + LT L + S + + R P T+++ ++ + Sbjct: 6 ERLKTLRKERQLTQEQLGELINVTKVSISGYENGN-----RTPDTDTLRRLADVFGVS 58 >gi|332705842|ref|ZP_08425918.1| putative transcriptional regulator [Lyngbya majuscula 3L] gi|332355634|gb|EGJ35098.1| putative transcriptional regulator [Lyngbya majuscula 3L] Length = 76 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 5/76 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S + + ++ E NLT LA G+ T+ + + E P + + ++ Sbjct: 1 MKSQEDQPLTLVKLREHVNLTQMKLAIAVGVSITTISDWENGKAE-----PRLKHVRLLI 55 Query: 63 AATNETICQLLDLPFS 78 + +L + Sbjct: 56 EILGCSFEELCEAFDQ 71 >gi|329768221|ref|ZP_08259722.1| hypothetical protein HMPREF0428_01419 [Gemella haemolysans M341] gi|328837420|gb|EGF87049.1| hypothetical protein HMPREF0428_01419 [Gemella haemolysans M341] Length = 119 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I E++NL+ LA ++ ++ + ++ + PS E+I K+ Sbjct: 9 NYIKSFREKYNLSQYELADLMNVNQSTIARWEKGE-----KTPSHENIAKLDD 56 >gi|291009445|ref|ZP_06567418.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 190 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 7/133 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + T + L++ G+ ++ ++ + R PS E + I A Sbjct: 8 VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQ-----RRPSLELLLPIAQAHQVP 62 Query: 69 ICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P K + + P + G + G + P + Sbjct: 63 LDELVGAPPVGDPRVRLKPIRRGDMTVVPLTQQPGGLQAFKMIMGAGRSEPD-PRTHEGY 121 Query: 128 NGIYAIQTQDTRH 140 +Y + Sbjct: 122 EWLYVLSGNLRLV 134 >gi|253988215|ref|YP_003039571.1| hypothetical protein PAU_00734 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638791|emb|CAR67408.1| hypothetical protein PA-RVA13-1279 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779665|emb|CAQ82826.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 101 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/99 (11%), Positives = 28/99 (28%), Gaps = 6/99 (6%) Query: 1 MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M H + + I + + +T LA + G+ ++ +R + Sbjct: 1 MKMRQDHLLVGKRIQKRRKELGMTAVKLAGQIGISQQQLSRYERGINR-----IDLSHLV 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 +I + + I S + + + Sbjct: 56 QIASILDTPINWFFLDCCSPATKININKLTDQYIPIAEA 94 >gi|170761839|ref|YP_001788364.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408828|gb|ACA57239.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 136 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + R +L + LA+ + + + + R P T ++ K+ N Sbjct: 3 EIKDRLKYERLRKDLNQTELAKILNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57 Query: 68 T 68 + Sbjct: 58 S 58 >gi|163794569|ref|ZP_02188540.1| Transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] gi|159180293|gb|EDP64816.1| Transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] Length = 190 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/162 (9%), Positives = 45/162 (27%), Gaps = 20/162 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I + + + + LA ++ + + ++ + + P+ + K+ A Sbjct: 13 QRIAQRLKGLRAERGWSLDQLATRSAISRATLSRLENAEV-----SPTANVLGKLCAVYG 67 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKW 115 T+ +L+ + + + E + + P G + Sbjct: 68 LTMSRLMHMVEGEFPALVRGEAQAVWNDPEIGFRRRSVSPPAQTLAAEALECEIDPGTRI 127 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 P H+ + + GD L Sbjct: 128 TYDEPPRPGLEHHLLMVNGK--LAVTVGGQTYN--LHPGDCL 165 >gi|325686748|gb|EGD28774.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 168 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 5/95 (5%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + + LA + + S +K + P E I ++ T LL Sbjct: 9 ELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQVTTDYLLL 63 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 ++ Y+ S GF+ Sbjct: 64 EDSDKPEIKPVLSEDEKNRYYKEVKSYGFWQVLYI 98 >gi|295104278|emb|CBL01822.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 120 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I + I +T LA + G+ T + + PS +++ I+ Sbjct: 1 MVDYADIGKRIRACRLAKGMTQEQLANEVGVVVTHISHIETGNSV-----PSLKTLIDII 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 A + + +LL + + L + Sbjct: 56 NALDCSADELLCIEIKKAKPVFDSWMTEQLADCSADEAKI 95 >gi|297587718|ref|ZP_06946362.1| DNA-binding protein [Finegoldia magna ATCC 53516] gi|297574407|gb|EFH93127.1| DNA-binding protein [Finegoldia magna ATCC 53516] Length = 172 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + + + L+ LA + + + +K +R P ++S+ K+ + + Sbjct: 4 ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSV-----PDSDSLIKLSEILHTS 56 >gi|226322523|ref|ZP_03798041.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] gi|225209017|gb|EEG91371.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] Length = 197 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I M ++ LT +A G ++ +R + PS ++ KI + + Sbjct: 3 GSRIREMRKKRGLTLKEVAEATGYTIGHISQIERD-----LKSPSLVALRKIAVCLDCSE 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L+ + ++ K+ Y + Sbjct: 58 VWLIMGDSELSAKSPEEGKKSKESYLVRKENRIPMKIPEIDVSYSI 103 >gi|239627732|ref|ZP_04670763.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239517878|gb|EEQ57744.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 94 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ N+T + LAR+ G ++ ++ + PS + + K+ + ++ Sbjct: 38 IIAARKQQNMTQAELARRVGTQKSNISRLESGNYN-----PSLDFLSKVAESLGKS 88 >gi|183602320|ref|ZP_02963687.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis HN019] gi|219682676|ref|YP_002469059.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|241190254|ref|YP_002967648.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195660|ref|YP_002969215.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218534|gb|EDT89178.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis HN019] gi|219620326|gb|ACL28483.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|240248646|gb|ACS45586.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250214|gb|ACS47153.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177969|gb|ADC85215.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis BB-12] gi|295793241|gb|ADG32776.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis V9] Length = 90 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+ R E LT LA ++G+ + N+ +R + PS +++ ++ A Sbjct: 33 AVSRAREEARLTQEQLAERSGVSRVTINRIERGKLN-----PSMKTLSRLARAMG 82 >gi|138893994|ref|YP_001124447.1| hypothetical protein GTNG_0320 [Geobacillus thermodenitrificans NG80-2] gi|196250338|ref|ZP_03149031.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134265507|gb|ABO65702.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196210227|gb|EDY04993.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 260 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLVKLRKEKGLSQEALAEKLNTTRQAISKWENGQG-----FPETEKLLMIANIFEVS 57 >gi|153005820|ref|YP_001380145.1| hypothetical protein Anae109_2962 [Anaeromyxobacter sp. Fw109-5] gi|152029393|gb|ABS27161.1| protein of unknown function DUF955 [Anaeromyxobacter sp. Fw109-5] Length = 476 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +H + + + + LT + LA + G+ + N + R S + K Sbjct: 1 MRDAAH--LGAKVRSLRRQRGLTQAHLAERLGISASYLNLIEHN-----RRSLSAPLLIK 53 Query: 61 ILAAT 65 + Sbjct: 54 LADIL 58 >gi|320536366|ref|ZP_08036407.1| helix-turn-helix protein [Treponema phagedenis F0421] gi|320146778|gb|EFW38353.1| helix-turn-helix protein [Treponema phagedenis F0421] Length = 102 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + R+ R N++ LA +A L T N + RW S ++ K+ + Sbjct: 10 EILAKNLKRLRRRENISQMELALRANLSTTFINSIENQQ-----RWVSPSTLSKLAKSLQ 64 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 +L + T + ++ Sbjct: 65 AYPHELFLSDDAPQNTFTGNSEHQHMI 91 >gi|331647039|ref|ZP_08348133.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] gi|331043822|gb|EGI15958.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] Length = 108 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I RM E L+ LA K+G+ ++ + G + P +++ I T Sbjct: 4 IGDNIRRMREAAKLSQQELADKSGVSKAQISRLEN----GTQKNPQIQTVIAIATELGTT 59 Query: 69 ICQLLDLPFS 78 I +L+ Sbjct: 60 IEELIFGEEP 69 >gi|300309752|ref|YP_003773844.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072537|gb|ADJ61936.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 89 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + +++ E + ++ LT S +AR+ G+ + + +R + S E + ++ Sbjct: 5 PVRTGRQLPELLQAYRKQSGLTQSEVARRLGVTQQNLSSLERNADK-----VSAERLIEL 59 Query: 62 LAATN 66 L Sbjct: 60 LNILG 64 >gi|299534219|ref|ZP_07047570.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] gi|298717866|gb|EFI58872.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] Length = 490 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + LT + LA+ L P+ N+ ++ R + + KI I Q Sbjct: 4 RLRSLRAERGLTQAALAQALELSPSYLNQIEQDQ-----RPLTVAVLLKIHRVLGVDIQQ 58 Query: 72 LLDLPF 77 + Sbjct: 59 FSEDEE 64 >gi|291550735|emb|CBL26997.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 643 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + T + +A K G+ +++ + R P E + +I ++ Sbjct: 7 EYLTKLRKSRVYTQAQMAEKLGISRSTYTNYENGN-----RTPDFEVLERISEVLACSLD 61 Query: 71 QLLDLPFSDGR 81 +L + Sbjct: 62 ELFGRKPTYVA 72 >gi|291005623|ref|ZP_06563596.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 200 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 M S ++ A + + ER L+ S +AR++G+ + ++ + Sbjct: 1 MGRESAGQVLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNP 49 >gi|283469656|emb|CAQ48867.1| conserved domain protein [Staphylococcus aureus subsp. aureus ST398] Length = 67 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R L + LA+ AG+ + + +R PS + KI N Sbjct: 3 NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFN 53 >gi|264677406|ref|YP_003277312.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262207918|gb|ACY32016.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 490 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + LT + LA+ L P+ N+ ++ R + + KI I Q Sbjct: 4 RLRSLRAERGLTQAALAQALELSPSYLNQIEQDQ-----RPLTVAVLLKIHRVLGVDIQQ 58 Query: 72 LLDLPF 77 + Sbjct: 59 FSEDEE 64 >gi|209542873|ref|YP_002275102.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530550|gb|ACI50487.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I R+ +L+ GLA + G+ P+ N + R + + K+ A + Sbjct: 5 RIGHIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQ-----RSVTASLLIKLTRALDV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +I L + R + PLL + P Sbjct: 60 SIEALSGVDEQRLRGLLHEALSDPLLGAHAVPAQEIAVLAAQPE 103 >gi|186704310|dbj|BAG30963.1| unnamed protein product [Comamonas testosteroni] Length = 495 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + LT + LA+ L P+ N+ ++ R + + KI I Q Sbjct: 9 RLRSLRAERGLTQAALAQALELSPSYLNQIEQDQ-----RPLTVAVLLKIHRVLGVDIQQ 63 Query: 72 LLDLPF 77 + Sbjct: 64 FSEDEE 69 >gi|183598790|ref|ZP_02960283.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827] gi|188020996|gb|EDU59036.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827] Length = 186 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+SF+ + I +A+ R ++ L+ S L+R+AG+ ++ ++ + PS E++ Sbjct: 1 MSSFTPPIELIAKALVRERQKSGLSLSELSRQAGIAKSTLSQLEAGNGN-----PSIETL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + I A + +L++ + + + + + V Sbjct: 56 WAICVALDVPFSRLIEDRHEPVTVIRHGDGIQVSAEHANYLAFLLSAAPANSQRDIYTVV 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178 P R + + + +M+ ++ ++ GD + Sbjct: 116 AEP-GRDRISEPHMRGVSEHIILMSGRAMVGPL--------DNPTELFPGDYIHYPGDEP 166 Query: 179 DIV 181 I+ Sbjct: 167 HIM 169 >gi|89069978|ref|ZP_01157310.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] gi|89044426|gb|EAR50557.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] Length = 201 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + + T ARKAGL ++ +K + + P+ +++ K+ + Sbjct: 19 DLGARVRELRKERDWTLEQAARKAGLARSTLSKIENGQM-----SPTYDALKKLATGLDI 73 Query: 68 TICQLLDLPF 77 +I QL P Sbjct: 74 SIPQLFTPPS 83 >gi|304438138|ref|ZP_07398081.1| transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368911|gb|EFM22593.1| transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 128 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIE 47 +I++ I E ++ LA++ G +S NK ++ + Sbjct: 3 EIYKRIRARREELGISQEELAKRMGYKSRSSINKIEKGEND 43 >gi|295705639|ref|YP_003598714.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803298|gb|ADF40364.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 66 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + ++ LA+ G+ + N + + PS F++ T+ Sbjct: 4 NRIKELRKSKKMSQDELAKVCGVSRQTINAIENNKYD-----PSLTLAFQLAEELGATVD 58 Query: 71 QLLDLP 76 +L Sbjct: 59 ELFLFH 64 >gi|257054325|ref|YP_003132157.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017] gi|256584197|gb|ACU95330.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017] Length = 156 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I I + ++ L++ AG+ ++ +R R PS E + +I Sbjct: 35 KDIGAYIRQQRNHAKISLRQLSKLAGVSNPYLSQIERG-----LRKPSAEILQQIAKGLR 89 Query: 67 ETICQLLDLPFSDGRTTEKKE 87 + L R Sbjct: 90 ISAEALYVQAGILDRPVGGPV 110 >gi|308233625|ref|ZP_07664362.1| DNA-binding protein [Atopobium vaginae DSM 15829] gi|328944523|ref|ZP_08241984.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] gi|327490924|gb|EGF22702.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] Length = 328 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +++ + LA K G+ S +K + G P E I + + Sbjct: 3 LADKILELRKQNGWSQEELADKLGVSRQSVSKWE-----GAQSIPDMERIIALSRLFGVS 57 >gi|227505625|ref|ZP_03935674.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227197778|gb|EEI77826.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 468 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 32/129 (24%), Gaps = 5/129 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ + LA GL + N+ + R + + +I Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + + L P + V + Sbjct: 61 ATFFSRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDIHRRYRNVR 120 Query: 129 GIYAIQTQD 137 ++ T Sbjct: 121 DKLSLATDS 129 >gi|167746879|ref|ZP_02419006.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|317471690|ref|ZP_07931031.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] gi|167653839|gb|EDR97968.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|316900794|gb|EFV22767.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] Length = 194 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 46/194 (23%), Gaps = 26/194 (13%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI------EGRNRWPSTESIFK 60 +KI + I + + LT LA + + +K +R + + K Sbjct: 4 QKIGKLIKTLRKEKQLTQMQLAEHMNISDKTISKWERGLGCPDISFFPKLSGVFDVDLEK 63 Query: 61 IL-------AATNETICQLLDLPFSDGRTTEKKEKEIPLLY----FPPSGSGGFFDSGVF 109 +L + + + + + + + Sbjct: 64 LLSGRLDVNEVLGGNMKHMQFYICPNCGNLVTALADTAVSCCGKKLRAVQARKAPEDERL 123 Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQVNC 167 + N + Y SM+ LY + D+ + I Sbjct: 124 KVESIENDYFISSPHEMTRDHYI----SFAALLTGDSMMVRRLYPEWDM---QTRIPAFG 176 Query: 168 GDRLLIKPRTGDIV 181 RL + Sbjct: 177 HGRLFWYCTKHGLY 190 >gi|332653329|ref|ZP_08419074.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] gi|332518475|gb|EGJ48078.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] Length = 194 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 +KI I + + LT LA++ + + +K +R Sbjct: 4 EKIGALIRSLRTQQGLTQRELAQRLTVSDKAVSKWERGQG 43 >gi|300917947|ref|ZP_07134577.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] gi|300414844|gb|EFJ98154.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] Length = 73 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ E + + ++ LT LA AGL + + + + PS E + + A Sbjct: 4 RLGEKLRDLRKQRGLTLEKLADMAGLSKSYLWELENRESQ----RPSAEKLTALADALG 58 >gi|291280679|ref|YP_003497513.1| transcriptional regulator, XRE family [Deferribacter desulfuricans SSM1] gi|290755381|dbj|BAI81757.1| transcriptional regulator, XRE family [Deferribacter desulfuricans SSM1] Length = 80 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + +T + LA++AG+ + +K ++ G+ S ++F +L Sbjct: 5 ELGQFIKAKRKEKKITQADLAKQAGISRQTLSKLEQ----GKLALVSIRTLFVVLDILGY 60 Query: 68 T 68 Sbjct: 61 E 61 >gi|228940885|ref|ZP_04103444.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973814|ref|ZP_04134390.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980403|ref|ZP_04140713.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228779223|gb|EEM27480.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228785839|gb|EEM33842.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818721|gb|EEM64787.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941562|gb|AEA17458.1| ans operon repressor protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 145 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 5/80 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ L+ LA + G ++ R P +++ KI + Sbjct: 2 LGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQ-----REPDYDTLKKIADFFEVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK 88 LLD + + K Sbjct: 57 TDYLLDRTQTKEMVSNNPTK 76 >gi|210615280|ref|ZP_03290495.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] gi|210150392|gb|EEA81401.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] Length = 252 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +++K + + + + +T LA K + + +K +R P+ + Sbjct: 1 MYQINNEKFGQFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNS-----MPNVTLLIP 55 Query: 61 ILAATNETICQ 71 I T+ + Sbjct: 56 IADVLGITVTE 66 >gi|167566021|ref|ZP_02358937.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis EO147] gi|167573100|ref|ZP_02365974.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis C6786] Length = 95 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + AI + E + LA AGL+ + + +R S ++ K Sbjct: 1 MTALVQ-RFGAAIRELREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEK 85 + A I +LL Sbjct: 55 LARAFGVPIARLLPPASDPSEPPPP 79 >gi|121609687|ref|YP_997494.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554327|gb|ABM58476.1| transcriptional regulator [Verminephrobacter eiseniae EF01-2] Length = 178 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + ++ LA+ AG+ PT ++ +R E PS ++ + A E+ Sbjct: 2 LGKRLHELRLTRGMSLRALAQAAGVSPTLLSQIERGVTE-----PSLSTLRALSAVFGES 56 Query: 69 I 69 + Sbjct: 57 M 57 >gi|327473031|gb|EGF18458.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK408] Length = 170 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|325688546|gb|EGD30563.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK72] Length = 170 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|325917919|ref|ZP_08180091.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325535865|gb|EGD07689.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 66 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E + + LA + G+ + N + + PS F+I E I Sbjct: 3 SRVRELRESNGWSQGELAEQLGVSRQTINALETGKYD-----PSLPLAFRIARLFGEPIE 57 Query: 71 QLLDLPFS 78 Q+ + Sbjct: 58 QVFLYEGN 65 >gi|324992265|gb|EGC24187.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] Length = 169 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|323353576|ref|ZP_08088109.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121522|gb|EFX93285.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 170 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|322386654|ref|ZP_08060279.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269327|gb|EFX52262.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|322390777|ref|ZP_08064288.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142532|gb|EFX37999.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 169 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|322388761|ref|ZP_08062358.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140380|gb|EFX35888.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 169 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|312279272|gb|ADQ63929.1| Transcriptional regulator, xre family [Streptococcus thermophilus ND03] Length = 170 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|312867912|ref|ZP_07728116.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096316|gb|EFQ54556.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 170 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|302529084|ref|ZP_07281426.1| predicted protein [Streptomyces sp. AA4] gi|302437979|gb|EFL09795.1| predicted protein [Streptomyces sp. AA4] Length = 796 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + LT LA ++G+ ++ + + GR P ++ I A T + Sbjct: 52 LRETRRQAGLTQEQLAERSGVSVSTIRRLEN----GRPVDPRMGTVKLIADALGTTPAEQ 107 >gi|296330344|ref|ZP_06872825.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676051|ref|YP_003867723.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152612|gb|EFG93480.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414295|gb|ADM39414.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 152 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I +R + + LA ++G+ + +K +R PS + + KI A Sbjct: 2 IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHT----NPSVQFLKKISATLEVE 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + +L D + +E ++ + G +F Sbjct: 58 LTELFD-AETMMYEKISGGEEEWRVHLVQAVQAGMEKEELF 97 >gi|262283472|ref|ZP_06061238.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260963|gb|EEY79663.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 170 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|228988770|ref|ZP_04148846.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770950|gb|EEM19440.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 63 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + T S LA K+G+ + + + G + PS +SI I A ++ Sbjct: 4 LHKVKEKRLNKGWTQSKLAEKSGVPQPTISHIEN----GTLKNPSIKSIKNIANALGISL 59 Query: 70 CQ 71 + Sbjct: 60 EE 61 >gi|291087102|ref|ZP_06345414.2| DNA-binding protein [Clostridium sp. M62/1] gi|291076197|gb|EFE13561.1| DNA-binding protein [Clostridium sp. M62/1] Length = 237 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I LT +A G+ + + + +P S+ K+ + Sbjct: 23 DIGSKIKAARLEKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 77 Query: 68 T 68 + Sbjct: 78 S 78 >gi|282599735|ref|ZP_05971683.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282568432|gb|EFB73967.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 201 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 62/175 (35%), Gaps = 14/175 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I +A+ ++ L+ S L+RKAG+ ++ ++ + PS E+++ + A + Sbjct: 24 ELISKALAAERQKSGLSISELSRKAGIAKSTLSQLESGSGN-----PSIETLWALCVALD 78 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L++ + E + + + + V P R Sbjct: 79 IPFSRLIEEKRAAVTVIRHGEGTPVSAEHANYLAYLLSSAPANSLRDIYTVVAQP-GRDR 137 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + +++ ++ I++N GD + + I+ Sbjct: 138 ISEPHMHDVTEHIILMSGRALVGPL--------DNPIELNVGDYIHYRGDEPHIM 184 >gi|255103226|ref|ZP_05332203.1| hypothetical protein CdifQCD-6_20608 [Clostridium difficile QCD-63q42] Length = 149 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 5/85 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + L LA + ++ + R P ESI K+ N T Sbjct: 3 GERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQ-----RTPPAESIVKLAEYFNVTT 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLY 94 LL ++ + ++ Sbjct: 58 DYLLGHTKTNYSVSANIPGMPSIIC 82 >gi|303235344|ref|ZP_07321962.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302493658|gb|EFL53446.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 174 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + + + L+ LA + + + +K +R P ++S+ K+ + + Sbjct: 4 ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSV-----PDSDSLIKLSEILHTS 56 >gi|300909985|ref|ZP_07127445.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] gi|300892633|gb|EFK85993.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] Length = 234 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + LT +A G+ + ++ + R P E+ K+ + T+ Sbjct: 9 NRIAELRKEKGLTLQQVADAIGVGNNTISRYETG-----KREPKLETWQKLANYFDVTVY 63 Query: 71 QLLDL 75 L Sbjct: 64 YLQGY 68 >gi|295697360|ref|YP_003590598.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412962|gb|ADG07454.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 70 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E + + +T LA KAG+ + + R + KI A Sbjct: 8 GERLKELRRERGMTVRELAEKAGVSQSYIYAVEAGT-----RGSRVGKLIKIARALE 59 >gi|291456538|ref|ZP_06595928.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] gi|291381815|gb|EFE89333.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] Length = 137 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R + +T + LA GL + + + E + I + Sbjct: 3 VGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKP-----ELLESIADTLGVS 57 >gi|315230325|ref|YP_004070761.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus barophilus MP] gi|315183353|gb|ADT83538.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus barophilus MP] Length = 186 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 5/101 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R+ + +T LA++AG+ K + ++ P + +IL A + Sbjct: 13 IRRIRKELGITQEELAKRAGVTQAYIAKLESGKVD-----PRLSTFNRILEALLQCKKAQ 67 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 L + + + GN Sbjct: 68 LKAKDVMSSPIIAVKPYDQVDKIIKLMNEHNISQVPVIAGN 108 >gi|169828330|ref|YP_001698488.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992818|gb|ACA40358.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 148 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 15/40 (37%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I I + +RH L+ LA K + + K + Sbjct: 5 IGMNIRVLRKRHKLSQEQLAEKVNVSRQTIAKWENGEAIP 44 >gi|126699269|ref|YP_001088166.1| putative transcriptional regulator [Clostridium difficile 630] gi|254975298|ref|ZP_05271770.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092688|ref|ZP_05322166.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100793|ref|ZP_05329770.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306676|ref|ZP_05350847.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314426|ref|ZP_05356009.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517102|ref|ZP_05384778.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650208|ref|ZP_05397110.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683328|ref|YP_003214613.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686924|ref|YP_003218057.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306520193|ref|ZP_07406540.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|115250706|emb|CAJ68530.1| Transcriptional regulator, RmlC-type [Clostridium difficile] gi|260209491|emb|CBA63038.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212940|emb|CBE04210.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 183 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 65/181 (35%), Gaps = 19/181 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++R+ NL+ LA +G+ ++ ++ P+ +I+KI + N Sbjct: 7 IAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSN-----PTVNTIWKIASGLNVP 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +L+ P ++ K + ++ + ++ + + + + E S + Sbjct: 62 YTAILEQPQNETFIVSKTDIDVQVSENKDYRLYCYYPNTPTRNFELF-QMELEEGHSYTS 120 Query: 129 GIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ ++Q+ + + R+ D + ++ + G+ Sbjct: 121 VGHSEKSQEYIMIIEGQLKLEVNDSIYQLRENDSICFSAES-------IHTYHNQGEKTL 173 Query: 183 K 183 K Sbjct: 174 K 174 >gi|86559544|ref|YP_473365.1| putative LexA repressor [Clostridium perfringens CPE str. F4969] gi|168215112|ref|ZP_02640737.1| LexA repressor [Clostridium perfringens CPE str. F4969] gi|86475816|dbj|BAE78992.1| putative LexA repressor [Clostridium perfringens] gi|170713481|gb|EDT25663.1| LexA repressor [Clostridium perfringens CPE str. F4969] Length = 393 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193 + + SM L++ +++I GD ++ + K I ++ + Sbjct: 283 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIDYLSENNEATCKK-IHKKKDKL 341 Query: 194 DLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222 +L + Y + + SDI I ++ S Sbjct: 342 ELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 371 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + ++ A++ + ++ + +R E P ++ K+ N Sbjct: 9 KLATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSE-----PPIYTLVKMSEVMNC 63 Query: 68 TICQ 71 +I + Sbjct: 64 SIDE 67 >gi|332798162|ref|YP_004459661.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695897|gb|AEE90354.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 123 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 5/97 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + I E+ L+ A GL + +R R S ++ K+ Sbjct: 5 NDAIGKRIREEREKLGLSREEFAEIIGLSDYYIGQLERGE-----RQMSMPTLIKVANCL 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + ++ L+ S + Sbjct: 60 HVSLDYLVLGRLSFDAAYICDPNNNTYETWDEGFYEI 96 >gi|325689190|gb|EGD31197.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 168 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 T LL ++ Y+ S GF+ Sbjct: 57 TTDYLLLEDSDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSA 102 >gi|317120977|ref|YP_004100980.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315590957|gb|ADU50253.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 244 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 5/74 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + L+ LAR+A + P+ + +R + PS + + Sbjct: 8 VGNRIRAARQAAGLSVKELARRAHISPSHLSDIERGV-----KHPSLAVAATLAQILGRS 62 Query: 69 ICQLLDLPFSDGRT 82 + ++ Sbjct: 63 LDWVVAGRDPLPDP 76 >gi|291459407|ref|ZP_06598797.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418006|gb|EFE91725.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 173 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +KI + + + +T LA + + ++ + P + + +I Sbjct: 1 MDQQKIGALLKELRRQRAVTQEQLAEMLNVSRRTVSRWETGSN-----MPDLDILIEIAD 55 Query: 64 ATNETICQ 71 I + Sbjct: 56 YYEIDIRE 63 >gi|260887021|ref|ZP_05898284.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|330839199|ref|YP_004413779.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260863083|gb|EEX77583.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|329746963|gb|AEC00320.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 135 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + LT LA+K L + ++ PS ++ I AT + Sbjct: 3 IGEKIKEARKAAGLTQMELAKKTRLSRSYIGDIEKDRYN-----PSLSTLELIAKATGTS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 + L+ + + P Sbjct: 58 LSALVRNEEQSTTPPDHYDTTSPH 81 >gi|297585237|ref|YP_003701017.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143694|gb|ADI00452.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 195 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 8/89 (8%), Positives = 33/89 (37%), Gaps = 4/89 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ + ++ LA +G+ ++ + + + + ++ K+ A + + Sbjct: 2 LKDNLKKLRKERGMSMRKLAELSGVSRSTLHDIENLN----MKSTTLNTLEKLADALDVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + L+ KE ++ Sbjct: 58 VNYLIVESIEHLIEEYLKEAKMSHSELAH 86 >gi|71276653|ref|ZP_00652924.1| phage-related repressor protein [Xylella fastidiosa Dixon] gi|71162525|gb|EAO12256.1| phage-related repressor protein [Xylella fastidiosa Dixon] Length = 143 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 23/53 (43%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + +++ AI + + +TP+ +A+ + S + G + + PS Sbjct: 1 MLTGEQLGRAIKQAMQLKGVTPTKMAKHFSVKAPSVYGWIKEGRISKEKLPSL 53 >gi|317470458|ref|ZP_07929846.1| hypothetical protein HMPREF1011_00193 [Anaerostipes sp. 3_2_56FAA] gi|316901973|gb|EFV23899.1| hypothetical protein HMPREF1011_00193 [Anaerostipes sp. 3_2_56FAA] Length = 216 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +F+ K++ E + NLT L ++ G++ ++ + + G++ + R + + L Sbjct: 6 TFTAKQVGERVKERRTELNLTMPELGKRIGVNKSTIQRYEADGVDPK-RTMIINGLAEAL 64 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 T E + L + D RT +K+ E + + + S Sbjct: 65 LTTPEWLTGLSEDKEYDSRTLCEKDLEEHIKKYIDTVSTVVNGEPH 110 >gi|307269275|ref|ZP_07550628.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4248] gi|306514372|gb|EFM82934.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4248] Length = 91 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 4/38 (10%), Positives = 16/38 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 ++ A+ ++ + + LA + G ++ + + Sbjct: 30 EVAVALAQLRKELGFSQRELAERVGKPQSTIARIENGT 67 >gi|294678861|ref|YP_003579476.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477681|gb|ADE87069.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 460 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 5/121 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ E +T + LAR + P+ N+ + R + + K+ AA + Sbjct: 9 RLKRLREDRGITQASLARALEISPSYLNQIENNQ-----RPLTVPVLLKLNAAFGLDVQL 63 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 D + + + + S Sbjct: 64 FSDADEARLIAELRGALADQGAGASLAEVREIAANMPAVARAIVAMQARLRDLSDRADAL 123 Query: 132 A 132 A Sbjct: 124 A 124 >gi|257870572|ref|ZP_05650225.1| predicted protein [Enterococcus gallinarum EG2] gi|257804736|gb|EEV33558.1| predicted protein [Enterococcus gallinarum EG2] Length = 275 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M F+ ++I + I N+T S LA + + + + +R P E + + Sbjct: 1 MNEFNIRQIGQRIASKRRELNMTQSNLADQLLVSYQAISNWERGNT-----LPDIEKLPQ 55 Query: 61 ILAATNETICQ 71 + +I + Sbjct: 56 LATILQLSIDE 66 >gi|125719034|ref|YP_001036167.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498951|gb|ABN45617.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 168 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 33/138 (23%), Gaps = 5/138 (3%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + + LA + + S +K + P E + ++ T LL Sbjct: 9 ELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQVTTDYLLL 63 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 ++ Y+ S GF+ + P + Sbjct: 64 EDSDKPEIKPVLSEDEKNRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPAKFTALVW 123 Query: 135 TQDTRHKTQDTSMLPLYR 152 ++ + Sbjct: 124 LSFFLLIASAMAINKALK 141 >gi|78060915|ref|YP_370823.1| transcriptional regulator [Burkholderia sp. 383] gi|77968800|gb|ABB10179.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia sp. 383] Length = 211 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 21/43 (48%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 H+ + + + LT + L+ ++G+ ++ +K++R Sbjct: 16 PQLDHQTVGARLRDARKSRGLTLAQLSERSGIAVSTISKAERG 58 >gi|313837698|gb|EFS75412.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA2] gi|314972637|gb|EFT16734.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA3] gi|328907505|gb|EGG27271.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium sp. P08] Length = 508 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I ++H +T + LA ++ ++ + S E I + Sbjct: 1 MDNITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 I A I + R + + + Sbjct: 56 IAEALESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 104 >gi|313904771|ref|ZP_07838144.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470374|gb|EFR65703.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 204 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K+ + I + +T + LA K G+ + +K + P T + ++ Sbjct: 1 MDQIKVGKFIAACRKEQGMTQANLAEKLGISDRAISKWETGKS-----MPDTGIMLELCE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + +LL +K+ +E L Sbjct: 56 HLKINVNELLSGEKIMAELYDKRAEENLLEMRRQVEE 92 >gi|291536229|emb|CBL09341.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 98 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I R+ E +LT + LA+K + +S N + PST + ++ + + Sbjct: 2 IADKIKRLREASHLTQTELAKKLNITRSSVNAWEMGISV-----PSTTYLIELALLFHVS 56 >gi|289425420|ref|ZP_06427197.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] gi|289154398|gb|EFD03086.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] Length = 508 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I ++H +T + LA ++ ++ + S E I + Sbjct: 1 MDNITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 I A I + R + + + Sbjct: 56 IAEALESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 104 >gi|77458573|ref|YP_348078.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382576|gb|ABA74089.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1] Length = 215 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 5/104 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + + R+ + +L+ LAR+ G+ + + PS + + KI Sbjct: 33 ERVAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSV-----PSIKVLCKIAKGLK 87 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 ++ L+ +G + L+ + Sbjct: 88 VSVAAFLEHRALEGVAVLSASQSKRLVSASGAFVSRALFPFDVA 131 >gi|329667094|gb|AEB93042.1| signal peptidase I [Lactobacillus johnsonii DPC 6026] Length = 216 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186 + + SM P + D +I ++ GD +++ G + K +I Sbjct: 31 FFVLNKYVFANLTVSGISMQPTFENNDRVIALRHAKIKEGDIVIVDAPDEPGAVYIKRVI 90 Query: 187 SRRGRSID 194 G +I Sbjct: 91 GLPGDTIV 98 >gi|313899841|ref|ZP_07833344.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312955456|gb|EFR37121.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 259 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R+ + ++ LA + + +K + P E++ + + +I Sbjct: 5 DNLYRIRKEKGMSQEELAALCDVSRQAISKWENGTAN-----PDMENLKTLSRSLRVSID 59 Query: 71 Q 71 + Sbjct: 60 E 60 >gi|297563305|ref|YP_003682279.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847753|gb|ADH69773.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 108 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ E + E+ + + L R+AG+ +S + + G E P+ ++ +I A Sbjct: 35 ELAETVRLRREQLGWSQAELGRRAGMPQSSIARFEHGGTE-----PTLPTLERIAEALG 88 >gi|28211763|ref|NP_782707.1| transcriptional regulator [Clostridium tetani E88] gi|28204205|gb|AAO36644.1| transcriptional regulator [Clostridium tetani E88] Length = 136 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + + +T LA K G+ + + R PS E + KI + Sbjct: 5 LGKKIKSLRKDNKITQEELAIKIGVSTSMVGMYETDA-----RKPSYEVLIKIADYFKVS 59 Query: 69 ICQLLDLPFS 78 + LL Sbjct: 60 LDYLLRETEY 69 >gi|115352794|ref|YP_774633.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282782|gb|ABI88299.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 227 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 6/177 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + R+ L+ LAR +G+ + + PS + + KI Sbjct: 29 DLLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIA 83 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 AA ++ L +G E+ ++ S P +++ + + Sbjct: 84 AALKVSVAAFLRRHAVNGFEHLAAERAARVVSSSGRFSARALYPEGEPAAAEFHELRIAP 143 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + A + ++ L+ V D+ GD Sbjct: 144 LHTEPGTRRA-PGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199 >gi|295108033|emb|CBL21986.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 48 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 M S++K + + + NLT LA K + + +K +R Sbjct: 1 MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGVS 46 >gi|289428534|ref|ZP_06430218.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|295130785|ref|YP_003581448.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] gi|289158228|gb|EFD06447.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|291375959|gb|ADD99813.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] Length = 508 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I ++H +T + LA ++ ++ + S E I + Sbjct: 1 MDNITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 I A I + R + + + Sbjct: 56 IAEALESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 104 >gi|169335433|ref|ZP_02862626.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] gi|169258171|gb|EDS72137.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] Length = 275 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 18/40 (45%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 KKI I + + NLT LA K + + +K +R Sbjct: 4 KKIGTFICSLRKEKNLTQKELADKLNITNKAISKWERGIS 43 >gi|73663000|ref|YP_301781.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495515|dbj|BAE18836.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 179 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 53/192 (27%), Gaps = 25/192 (13%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + LT LA + L ++ + PS E+ IL Sbjct: 2 EIGKKIKNLRNIKKLTQEELAERTDLSKGYISQIESQYA-----SPSMETFLNILEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS-- 125 + +EK + G+ + N+++ + Sbjct: 57 SPSDFFKE-----PKSEKVLYKKATQITYDEYDKGYILNWPVSQSNEFDMEPLILTLRAN 111 Query: 126 -PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + ++ + + +L ++ N GD L K Sbjct: 112 ASYKNFGPSESDTFIYCLKGEVVL--------MLGNQNYYATTGDALYFKANQ----IHR 159 Query: 185 LISRRGRSIDLM 196 L ++ + +M Sbjct: 160 LENQTADEVQVM 171 >gi|15964024|ref|NP_384377.1| hypothetical protein SMc00351 [Sinorhizobium meliloti 1021] gi|15073200|emb|CAC41708.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] Length = 197 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 5/112 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + +LT LA ++G+ ++ +R P+ + + K+ +A T+ Sbjct: 20 RLRELRMARDLTLDDLAGRSGVSRAMISRIERGEA-----SPTAQLLAKLCSALGTTLSA 74 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L S+ + ++ + V P Sbjct: 75 LFASERSEASPLARHAEQRLWRDPESGYLRRSVSPEGVGSPVDIVEVEFPPG 126 >gi|103485648|ref|YP_615209.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98975725|gb|ABF51876.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 93 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 5/75 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + + E + LAR+ G+ + N + + PS ++ Sbjct: 22 TGAAVENRVREYREAAGWSQGELARRLGVSRQTINAVETDKYD-----PSLPLALRMARL 76 Query: 65 TNETICQLLDLPFSD 79 +C+L ++ Sbjct: 77 FALEVCELFIDHWNP 91 >gi|313902610|ref|ZP_07836010.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313467176|gb|EFR62690.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 456 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 10/109 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + R L+ LA +AG+ + + + PS ++ A Sbjct: 52 REGVASRLREARRRLGLSQRELAVRAGVSRQAIGAIEAGRMT-----PSLAVAMRLARAL 106 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + L L + + D G P G Sbjct: 107 GCRVEDLFRLDE-----PAPEMVVELAPATALATPRQDRDGGPVPAGAG 150 >gi|308175899|ref|YP_003915305.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307743362|emb|CBT74334.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 66 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S ++ + R +++ LT LA AG+ + +R PS +++ + Sbjct: 1 MNSVSELGAELQRARKQNGLTQEQLADLAGISERTLRSIERGAGN-----PSIDAVLSVA 55 Query: 63 AATN 66 Sbjct: 56 DVLG 59 >gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] Length = 347 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I + R L+ LA++ G+ T+ +K ++ I P ++ + ++ A Sbjct: 3 IGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVIT-----PDSQMLIRLARAL 54 >gi|169336953|ref|ZP_02620338.2| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169296221|gb|EDS78354.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 185 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 41/164 (25%), Gaps = 28/164 (17%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E + ++ LT LA + L ++ +R PS ++ IL Sbjct: 8 NIGEKLKQLRIEKGLTQMDLASRCELSKGFISQVERDLT-----SPSIATLVDILECLGT 62 Query: 68 TICQLLDLPF-----------------------SDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + + +K P+L Sbjct: 63 NLKDFFNNDEEEKIVFSKEDIFESEDTELNYSVQWIIPNAQKNMMEPILVTLQPNGQYKN 122 Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148 D + VG I H A + + +K + + Sbjct: 123 DEPHEGEEFGYVLVGTIYIHLGHKKYKAKKGESFYYKARKNHYI 166 >gi|121998083|ref|YP_001002870.1| AAA ATPase [Halorhodospira halophila SL1] gi|121589488|gb|ABM62068.1| AAA ATPase [Halorhodospira halophila SL1] Length = 816 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 44/201 (21%), Gaps = 23/201 (11%) Query: 39 NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 R IE PS + L ++ + + Sbjct: 609 QAYFRQEIEAAFSQPSDNTEASTLQPAPVIPLDEQSSTEAEDEPRTIPAEAVTPADNAVP 668 Query: 99 GSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 +G F G + E +Y + + + SM G Sbjct: 669 FIELEAAAGEFQAGFAEAERLEETETWIALPELYRARRGLFVARVKGESMNRRIPNGAWC 728 Query: 158 ILNSAIQVNCGDRLLIKPRTG--------DIVAKVLISRR---------GRSIDLMSL-- 198 + + + R+++ + K S + I L Sbjct: 729 LFEANPGGSRHGRVVLAYHRDIQDPDNNSALTVKRYYSEKITSADGQWQHSRITLACDTL 788 Query: 199 NCCYPVDTVEMS---DIEWIA 216 Y +E D+ + Sbjct: 789 TPGYEDIVLEEEQARDLRILG 809 >gi|323126868|gb|ADX24165.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 113 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + + LT S +A+K G+ ++ +R + P+ +++ K+ N + Sbjct: 5 ERLKLLRTQAKLTQSQIAKKLGVSQQAYGDWERGVKK-----PTQDNLVKLSNIFNVS 57 >gi|312863214|ref|ZP_07723452.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100750|gb|EFQ58955.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 158 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGENIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56 Query: 69 ICQ 71 Sbjct: 57 YID 59 >gi|302388982|ref|YP_003824803.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302199610|gb|ADL07180.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 135 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 E + + + ++ LAR + ++ K + R P E++ KI Sbjct: 4 GERLQELRKEKGISREELARALQVSYSAIAKYETNV-----RKPDQETLKKIADYF 54 >gi|218673348|ref|ZP_03523017.1| putative transcriptional regulator [Rhizobium etli GR56] Length = 125 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EA+ R+ R ++ +A + P + + G+ P+ + + + Sbjct: 1 MTPF-----GEAVRRLRARKGVSQKEMAEALNVSPAYLSALE----HGKRGLPTFDLLQR 51 Query: 61 ILAATNETICQ 71 I N + Sbjct: 52 IAGYFNIIWDE 62 >gi|148548690|ref|YP_001268792.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512748|gb|ABQ79608.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 104 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 5/74 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + A+ R + LT + LA + G DP + ++ + PS ++I Sbjct: 1 MTRSALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETNTYT-----PSIDAIMAFAQ 55 Query: 64 ATNETICQLLDLPF 77 P Sbjct: 56 VLGVKPKDFFAEPD 69 >gi|95928598|ref|ZP_01311345.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95135388|gb|EAT17040.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 82 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + S + + + +R L+ + + G+D + +K +R R +++F++ Sbjct: 4 KTTSPQSLGLILRAARKRKGLSQTKAGKSVGIDQPTLSKIERGESNAR-----LDTLFRL 58 Query: 62 LAATNET 68 LAA + Sbjct: 59 LAALDME 65 >gi|291567885|dbj|BAI90157.1| putative XRE family transcriptional regulator [Arthrospira platensis NIES-39] Length = 150 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 22/49 (44%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + I + + ++ E L+ + LA+ G+ P + N+ + + + Sbjct: 14 QDIPQLLRQLREDLELSQAELAQFLGVSPQTINRWENGHSQPSAISINL 62 >gi|229061582|ref|ZP_04198926.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] gi|228717816|gb|EEL69466.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] Length = 118 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I + + LT + G+ + +K ++ PS E+I K+ N Sbjct: 4 IGERIFDLRKERKLTQEKIGENIGVSKQTISKYEKGIKI-----PSRENIEKLADFFN 56 >gi|168205968|ref|ZP_02631973.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170662549|gb|EDT15232.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 365 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193 + + SM L++ +++I GD ++ + I ++ + Sbjct: 255 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC-KKIHKKKDKL 313 Query: 194 DLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222 +L + Y + + SDI I ++ S Sbjct: 314 ELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 343 Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 7/64 (10%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + ++ A++ + ++ + +R E P ++ K+ N Sbjct: 9 RLATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSE-----PPIYTLVKMSEVMNC 63 Query: 68 TICQ 71 +I + Sbjct: 64 SIDE 67 >gi|162457184|ref|YP_001619551.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161167766|emb|CAN99071.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 79 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 6/73 (8%) Query: 6 HKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +I I + +T + LA K G+ + ++ PS E F+I AA Sbjct: 5 QPQITNVIRTLRFHAGEMTQAELAEKVGVTRQTIVAIEQGRY-----SPSLEVAFRIAAA 59 Query: 65 TNETICQLLDLPF 77 + + Sbjct: 60 FGVPLEHVFQWKG 72 >gi|53724684|ref|YP_102063.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121600848|ref|YP_994013.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124384800|ref|YP_001028323.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126450213|ref|YP_001081967.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|167004339|ref|ZP_02270099.1| DNA-binding/cupin domain protein [Burkholderia mallei PRL-20] gi|238562539|ref|ZP_00440248.2| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|254176797|ref|ZP_04883454.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254208723|ref|ZP_04915071.1| DNA-binding/cupin domain protein [Burkholderia mallei JHU] gi|52428107|gb|AAU48700.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121229658|gb|ABM52176.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124292820|gb|ABN02089.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126243083|gb|ABO06176.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147750599|gb|EDK57668.1| DNA-binding/cupin domain protein [Burkholderia mallei JHU] gi|160697838|gb|EDP87808.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238522411|gb|EEP85855.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243060323|gb|EES42509.1| DNA-binding/cupin domain protein [Burkholderia mallei PRL-20] Length = 222 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 6/172 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 36 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 90 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ + ++ S P +++ + + + + H Sbjct: 91 VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHG 150 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + ++ + L+ V D+ GD Sbjct: 151 APCA-PGTSVNLVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDT 201 >gi|15609154|ref|NP_216533.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|148661831|ref|YP_001283354.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|167970453|ref|ZP_02552730.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|306776255|ref|ZP_07414592.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306972365|ref|ZP_07485026.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307080074|ref|ZP_07489244.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307084649|ref|ZP_07493762.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|2896754|emb|CAA17231.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148505983|gb|ABQ73792.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|308215287|gb|EFO74686.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308358155|gb|EFP47006.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308362088|gb|EFP50939.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308365757|gb|EFP54608.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] Length = 346 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + LT LA GL + N+ + +R P + K+ Sbjct: 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESG-----DRDPDQHIVAKLAEILG 56 >gi|116494509|ref|YP_806243.1| double-stranded beta-helix-like protein [Lactobacillus casei ATCC 334] gi|191637947|ref|YP_001987113.1| hypothetical protein LCABL_11700 [Lactobacillus casei BL23] gi|227535519|ref|ZP_03965568.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631268|ref|ZP_04674299.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116104659|gb|ABJ69801.1| Double-stranded beta-helix related protein [Lactobacillus casei ATCC 334] gi|190712249|emb|CAQ66255.1| Double-stranded beta-helix related protein [Lactobacillus casei BL23] gi|227186841|gb|EEI66908.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525733|gb|EEQ64734.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382018|gb|AEA53494.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei LC2W] gi|327385175|gb|AEA56649.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei BD-II] Length = 179 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 42/176 (23%), Gaps = 17/176 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + R NLT L + L ++ + PS E+ F IL+ E Sbjct: 2 EIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQS-----SPSLETFFDILSVLGE 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + D + + Y N+ V + Sbjct: 57 SPADFFREEPKDSLVYHED---DQVTYLDEEKGYRLKWLVPESNENEMEPVMIDFAAHGI 113 Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + L L+ G+ + + Sbjct: 114 FKTFEPSPAETFVYVVSGRVKL--------LLGEQTYVAKKGETIYFHATKQHQLV 161 >gi|49185356|ref|YP_028608.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49477744|ref|YP_036632.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65319812|ref|ZP_00392771.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|229122064|ref|ZP_04251280.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|49179283|gb|AAT54659.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49329300|gb|AAT59946.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228661407|gb|EEL17031.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] Length = 69 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 9/77 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H +I T LA++ G+ + ++ PS FK Sbjct: 1 MFLLLHNRIV----VCRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFK 51 Query: 61 ILAATNETICQLLDLPF 77 I + I + D Sbjct: 52 IANVFEKPITDVFDYQE 68 >gi|310830006|ref|YP_003962363.1| hypothetical protein ELI_4466 [Eubacterium limosum KIST612] gi|308741740|gb|ADO39400.1| hypothetical protein ELI_4466 [Eubacterium limosum KIST612] Length = 112 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +HK+I + I + N++ LARK G+ PT + + S +S+ + Sbjct: 1 MNEINHKEIGQRIRKQRTFLNMSRDELARKIGITPTFLADIELGT-----KGFSLKSLNR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + +L P + E+ P Sbjct: 56 FCNVLKMSSDAILYGPKEYKGVKYTELLELLECCSPE 92 >gi|300697493|ref|YP_003748154.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074217|emb|CBJ53762.1| putative transcriptional regulator [Ralstonia solanacearum CFBP2957] Length = 201 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+ + +R L+ L+R+AG+ + ++ +R P+ ++++ A + Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVS 74 Query: 69 ICQL 72 + Sbjct: 75 LTDF 78 >gi|296533794|ref|ZP_06896337.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265880|gb|EFH11962.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 468 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 15/34 (44%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 I I R+ + LT LA + G+ + N + Sbjct: 6 IGRTIRRLRQEQGLTQQALASRLGISASYLNLIE 39 >gi|284032671|ref|YP_003382602.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811964|gb|ADB33803.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 191 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 7/146 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + T + LA G+ ++ ++ + R P+ E + + A Sbjct: 9 EAVGPRLRRLRQERGTTLTQLAESTGISVSTLSRLEAGQ-----RRPTLELLLPLARAHQ 63 Query: 67 ETICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE-IR 124 + +L+D P + K + P S G + W V + Sbjct: 64 VQLDELVDAPSTGDPRIHSKPIKRFGAVLIPLSRRPGGLQAFKQIAPPGWPGGEVEQKTH 123 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL 150 ++ IY + + +L Sbjct: 124 EGYDWIYVLSGRLRLVLGDKDFILEA 149 >gi|224282243|ref|ZP_03645565.1| putative phage regulatory protein [Bifidobacterium bifidum NCIMB 41171] gi|311063583|ref|YP_003970308.1| XRE family transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|313139384|ref|ZP_07801577.1| predicted protein [Bifidobacterium bifidum NCIMB 41171] gi|310865902|gb|ADP35271.1| XRE family transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|313131894|gb|EFR49511.1| predicted protein [Bifidobacterium bifidum NCIMB 41171] Length = 113 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ +H + S LA +AG + +K R P++ ++ I A + T Sbjct: 5 LGDRMRKLMRQHGINQSQLAARAGTTQPNISKYLAGE-----REPTSSTLANIATALHTT 59 >gi|207724614|ref|YP_002255011.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] gi|206589836|emb|CAQ36797.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] Length = 201 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+ + +R L+ L+R+AG+ + ++ +R P+ ++++ A + Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVS 74 Query: 69 ICQL 72 + Sbjct: 75 LTDF 78 >gi|254416780|ref|ZP_05030530.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC 7420] gi|254417544|ref|ZP_05031282.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC 7420] gi|196175642|gb|EDX70668.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC 7420] gi|196176520|gb|EDX71534.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC 7420] Length = 77 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + ++ +R LT +A G+ + + + E R T+++ IL Sbjct: 4 GHKLMKLRKRLGLTQKQVADAVGVTDQTVSNWEAGRFEPRLTIRQTQALCSILQCP 59 >gi|148259597|ref|YP_001233724.1| hypothetical protein Acry_0581 [Acidiphilium cryptum JF-5] gi|326402804|ref|YP_004282885.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401278|gb|ABQ29805.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5] gi|325049665|dbj|BAJ80003.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 484 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 18/42 (42%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 I ++ E+ L +AR+ GL P+ N+ + R Sbjct: 17 GARIRQIREQRGLQQRDIARRLGLSPSYMNQIENDRRPVPPR 58 >gi|83747823|ref|ZP_00944856.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|207739254|ref|YP_002257647.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] gi|83725470|gb|EAP72615.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|206592627|emb|CAQ59533.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] Length = 201 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+ + +R L+ L+R+AG+ + ++ +R P+ ++++ A + Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVS 74 Query: 69 ICQL 72 + Sbjct: 75 LTDF 78 >gi|254203747|ref|ZP_04910107.1| DNA-binding/cupin domain protein [Burkholderia mallei FMH] gi|254360225|ref|ZP_04976495.1| DNA-binding/cupin domain protein [Burkholderia mallei 2002721280] gi|147745259|gb|EDK52339.1| DNA-binding/cupin domain protein [Burkholderia mallei FMH] gi|148029465|gb|EDK87370.1| DNA-binding/cupin domain protein [Burkholderia mallei 2002721280] Length = 218 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 6/172 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 32 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ + ++ S P +++ + + + + H Sbjct: 87 VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHG 146 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + ++ + L+ V D+ GD Sbjct: 147 APCA-PGTSVNLVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDT 197 >gi|116617221|ref|YP_817592.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096068|gb|ABJ61219.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 240 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + +++ LT A K + S + +R P+TE + I+ + Sbjct: 2 EIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKG-----HPTTEMMLLIIEKFDL 56 Query: 68 TICQLLDLPFSDGRTTEKK 86 + + P + +++ Sbjct: 57 PLDFFIIPPTNSCEDNDEE 75 >gi|297620733|ref|YP_003708870.1| putative LexA repressor [Waddlia chondrophila WSU 86-1044] gi|297376034|gb|ADI37864.1| putative LexA repressor [Waddlia chondrophila WSU 86-1044] Length = 205 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 54/201 (26%), Gaps = 30/201 (14%) Query: 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M + ++I++ I + + +PS + G + S Sbjct: 1 MKGLTKRQREIFDYIQEYIKSNRYSPSYREIMEHFG-------------------FLSIA 41 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 S+ K L T + S G G Sbjct: 42 SVSKHLGVLQSKGAITTKKNSRRSITPCDSTPQQK-----ESAEAELPFIGHIMGGVPIE 96 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175 T + + + + + + + S+ + GD+L+ + + G+ ++ Sbjct: 97 TFPLTQTLTVPKFLVHNVEKTYVLRAKGDSLSQEMIQDGDLLLTEARSEALAGEIIIGAL 156 Query: 176 RTGDIVAKVLISRRGRSIDLM 196 K G S+ L+ Sbjct: 157 EDRRTFVKQYFP-EGNSVRLI 176 >gi|242242403|ref|ZP_04796848.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242234110|gb|EES36422.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|319401579|gb|EFV89789.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] Length = 179 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/197 (10%), Positives = 56/197 (28%), Gaps = 35/197 (17%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + NLT LA + L ++ + PS E+ ++ Sbjct: 2 DIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHA-----SPSMETFLNLIEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126 + + +K E+ I Y G+ + + N+++ + P Sbjct: 57 SASDFFKESSDEKVLYKKNEQTIYDEY-----DKGYILNWLVTNSNEFDMEPLILTLRPN 111 Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183 + ++ + + + G+++ + + K Sbjct: 112 ASYKNFKPSESDTFIYCLNGE-----------------VSLQLGNQVYKACKEDVLYFKA 154 Query: 184 ----VLISRRGRSIDLM 196 L + + + ++ Sbjct: 155 KDKHRLYNETNKEVKVL 171 >gi|227824270|ref|ZP_03989102.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827135|ref|ZP_04453204.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|331084539|ref|ZP_08333639.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] gi|157816229|gb|ABV82121.1| HTH domain protein [Eubacterium saburreum] gi|157816232|gb|ABV82123.1| HTH domain protein [Streptococcus salivarius] gi|226904769|gb|EEH90687.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788753|gb|EEP24867.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|330401089|gb|EGG80683.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] Length = 114 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 5/88 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + +T LA K + + + +R E P ++ KI + Sbjct: 11 GKQIRHLRTQSGMTQEELAGKLNVTRQALSNWERDVNE-----PDLNTLKKICFLFGVHM 65 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + T EKK + + Sbjct: 66 DDFAKEVITKMETCEKKRNDNLISMIWQ 93 >gi|168204997|ref|ZP_02631002.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170663385|gb|EDT16068.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] Length = 180 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ ++ LT LA G+ + + + + + E++ L ++ Sbjct: 3 IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALATALKLDLKS 60 Query: 69 ICQLLDLPFSDGRTTEKKE 87 L +E Sbjct: 61 FFDDTLLEEDYYLKPLSEE 79 >gi|220923836|ref|YP_002499138.1| peptidase S24 and S26 domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219948443|gb|ACL58835.1| peptidase S24 and S26 domain protein [Methylobacterium nodulans ORS 2060] Length = 151 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 4/114 (3%) Query: 111 TGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168 G E A + + M D+ +++ ++ G Sbjct: 28 AGFPSPAEDFIEGALELPRWLAPNPAATFIWRVRSWCMKGAGIHDQDLAVVDRSLHPGPG 87 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 ++ G++ K L+ G + L N P +E + I +L S Sbjct: 88 AVVVAVAN-GEMSLKRLV-LDGNRLALTFDNPEMPAFGLEDLEECQIWGVLLFS 139 >gi|154484069|ref|ZP_02026517.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] gi|149735111|gb|EDM50997.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] Length = 177 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 5/73 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + LT LA +A L ++ +R PS ++ IL Sbjct: 2 DIGKKIKELRILKGLTQEELADRAELTKGFISQVERNHT-----SPSIATLVDILQCLGT 56 Query: 68 TICQLLDLPFSDG 80 + + + Sbjct: 57 DLKNFFEDDEDNQ 69 >gi|332299188|ref|YP_004441110.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332182291|gb|AEE17979.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 165 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 8/71 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S I + I + + LT L+ + + P + +K + +P + K Sbjct: 1 METIS---IGKKIAELRKAKGLTQDELSEQLNVSPQAVSKWENDVS-----YPDITLLPK 52 Query: 61 ILAATNETICQ 71 + A T+ Sbjct: 53 LAAVLGVTVDD 63 >gi|325564166|gb|ADZ31423.1| C.PsuNIP [Pseudomonas stutzeri] Length = 78 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +A+ R E L+ LA +AG+D T + +R R PS + +I A Sbjct: 8 GQAVRRHRELLRLSQEELADRAGIDRTYISGVERGV-----RNPSLLVMQRIATALG 59 >gi|310828173|ref|YP_003960530.1| transcription regulator [Eubacterium limosum KIST612] gi|308739907|gb|ADO37567.1| transcription regulator [Eubacterium limosum KIST612] Length = 99 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++ + T LA K G+ S + + ++PS + + KI N + Sbjct: 5 GSKLRQLRQEKGYTQQQLADKLGITKGSVSAYE-----TSAKYPSVDVLRKIAVTLNTS 58 >gi|226309766|ref|YP_002769660.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226092714|dbj|BAH41156.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 69 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ I + T L+ K G+ + +R R P+ + KI + Sbjct: 4 NQLGNRIRSFRKLKGYTQQSLSDKMGVSLSFVGSLERGT-----RTPTEPVLRKIASTLQ 58 Query: 67 ETICQLL 73 +L Sbjct: 59 VDYDELC 65 >gi|255283309|ref|ZP_05347864.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255266163|gb|EET59368.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 224 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 16/38 (42%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 E + + +++ + LA K G+ + +K + Sbjct: 5 EKLQMLRKKNGYSQEQLADKIGIARQTVSKWENGQAIP 42 >gi|42518326|ref|NP_964256.1| hypothetical protein LJ0240 [Lactobacillus johnsonii NCC 533] gi|41582610|gb|AAS08222.1| hypothetical protein LJ_0240 [Lactobacillus johnsonii NCC 533] Length = 341 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H ++ + I + +++NL+ GLA K + + +K + P E I + Sbjct: 16 HMRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSI-----PDIEKIVSLSELF 70 Query: 66 N 66 Sbjct: 71 G 71 >gi|62389267|ref|YP_224669.1| MerR family transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21323134|dbj|BAB97762.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41324601|emb|CAF19083.1| transcriptional regulator, MerR family [Corynebacterium glutamicum ATCC 13032] Length = 474 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/173 (9%), Positives = 44/173 (25%), Gaps = 13/173 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ + LA GL + N+ + R + + +I A Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEAFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + + + V + + Sbjct: 61 ATFFSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARAMVEMHQRYRNVR 120 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++I + +T + + +V D + + D + Sbjct: 121 DKFSIAVDN---RTNTPEERRPIAEAVSM---PHEEVR--DFIYARQNYFDAL 165 >gi|303239261|ref|ZP_07325790.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593306|gb|EFL63025.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 125 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 15/131 (11%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + T L + GL S + +R P T+++ K+ + TI Sbjct: 3 NRIRELRKELGFTQEELGKMIGLSERSVGSYE-----TSDRDPDTDTLNKLAQIFDCTID 57 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 +L + +K+ E +Y +P+ Sbjct: 58 YMLMRSNTRKTEEKKEMAEAEEMYRVDPDFLIEMCRAKV----------LPDEVRKRLRE 107 Query: 131 YAIQTQDTRHK 141 YA + K Sbjct: 108 YAAFEMERFLK 118 >gi|300715975|ref|YP_003740778.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299061811|emb|CAX58927.1| predicted transcriptional regulator [Erwinia billingiae Eb661] Length = 188 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 37/134 (27%), Gaps = 8/134 (5%) Query: 1 MTSF--SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--- 55 M + +++ + + + + LA G+ S ++ +R + Sbjct: 1 MEPLANTDRRLAQRLADLRLEKGWSLETLAELTGISRASLSRIERGETSPTAALMNRLCI 60 Query: 56 ---ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 ++ ++L+ E QLL + + P + G +G Sbjct: 61 AYGLTMSRLLSEVEEQGPQLLRAGAQTVWQDRENGYHRRSVSPPATPFHAELVEGRLQSG 120 Query: 113 NKWNTVGVPEIRSP 126 P Sbjct: 121 ALIEYDAPPVEGIE 134 >gi|292657070|ref|YP_003536967.1| transcriptional regulator [Haloferax volcanii DS2] gi|291370611|gb|ADE02838.1| transcriptional regulator [Haloferax volcanii DS2] Length = 70 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + E +L+ LA G+ + N +R + PS E FK+ A + + L Sbjct: 5 LRTRREAADLSQGELAEAVGVTRQTINAIERERYD-----PSLELAFKLAAYFDCRVEDL 59 Query: 73 LDLP 76 D Sbjct: 60 FDPE 63 >gi|283783001|ref|YP_003373755.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|298253582|ref|ZP_06977372.1| transcriptional regulator [Gardnerella vaginalis 5-1] gi|283441430|gb|ADB13896.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|297532349|gb|EFH71237.1| transcriptional regulator [Gardnerella vaginalis 5-1] Length = 328 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +++ + LA K G+ + +K + G P E I + + Sbjct: 3 LADKILELRKQNGWSQEELADKLGVSRQAVSKWE-----GAQSIPDMERIIALSRLFGVS 57 >gi|302877980|ref|YP_003846544.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302580769|gb|ADL54780.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 102 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+ R LT S +A++ G ++ ++ + I + PS ++ K A Sbjct: 39 LHAVLRARREAGLTQSEIAQRMGTTTSAVSRLESSLISQK-HSPSFSTLKKYAHACG 94 >gi|251779846|ref|ZP_04822766.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084161|gb|EES50051.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 127 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 17/140 (12%) Query: 1 MTSF----SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M S + K I + I+ + NL+ LA + + + ++ R P E Sbjct: 1 MVSLRGGVTIKTIGQKIEERLQELNLSQKDLADRVNVTEATISRYISGV-----RNPRGE 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + +I T LL + K+ + G + + Sbjct: 56 ILSRIALTLRLTTDYLLGNTSIEKNNESNINKKYNDISKAFEKKGLSLED--------ID 107 Query: 117 TVGVPEIRSPHNGIYAIQTQ 136 ++ +I + I+ Sbjct: 108 SIEFEKILDMYMLAKGIKKD 127 >gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/177 (9%), Positives = 53/177 (29%), Gaps = 19/177 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + ++ LA+++GL + ++ +R + PS ++ I A + Sbjct: 5 NLGKKVQDFRNKSGMSLRELAKRSGLTASMLSQIERDLVN-----PSIGTLKAIAQALDV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--------GFFDSGVFPTGNKWNTVG 119 + + + ++ + + + + G + + + Sbjct: 60 PMFKFFKDDEPQVQMIVRRGENKTIGHPDADLAYTLLTPDVRGSIEFCMMSIPPGLTSGR 119 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLI 173 P+ Y ++ S +GD + + G ++ Sbjct: 120 NPQEHVGEEVAYVVRGS-VEINVAGVSYQ--LEEGDSIRIPPQTAHQWMNQGGTVVQ 173 >gi|239624525|ref|ZP_04667556.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239520911|gb|EEQ60777.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 177 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + LT LA +A L ++ +R PS ++ IL Sbjct: 2 DIGNKLKELRVLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56 Query: 68 TICQLL 73 TI Sbjct: 57 TIGDFF 62 >gi|218282117|ref|ZP_03488416.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] gi|218216910|gb|EEC90448.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] Length = 334 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 5/95 (5%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 +++ T LA+K G+ S +K + G P + I ++ + LL Sbjct: 26 RKKNGWTQEDLAQKLGVSRQSVSKWESAGAI-----PDLKKIIQLADLFEVSTDYLLKDE 80 Query: 77 FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 T + + L + + D Sbjct: 81 IEKENTDISCDTDCELHRVTMEEANAYMDEKKKAA 115 >gi|167644376|ref|YP_001682039.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167346806|gb|ABZ69541.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 126 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 5/124 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S +++ A+ LT LA++ G + ++ + + GR + + Sbjct: 1 MRSDIFQQLGGALKAARRTKGLTQGQLAKRLGREQGRVSELETDLVRGRLGKDRLTLLAE 60 Query: 61 ILAATN-----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 I A + Q + F+ G++ Sbjct: 61 ICDALDLVPVLMPRAQASAMIGLQPGRDANALAHGSGSQHAHGPPRSTFEELFVDLGDED 120 Query: 116 NTVG 119 Sbjct: 121 EENP 124 >gi|162454793|ref|YP_001617160.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161165375|emb|CAN96680.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 357 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ + L+ LA+ +G+ ++ + P+ ++KI A Sbjct: 177 VGANLRRLRTKRGLSLERLAKASGVSRAMLSQIELGQST-----PTINVLWKIARALGVP 231 Query: 69 I 69 Sbjct: 232 F 232 >gi|296533427|ref|ZP_06896012.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296266247|gb|EFH12287.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 189 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 7/120 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESI 58 S ++ + + E + S LA ++G+ +K +R + GR S+ Sbjct: 6 SSAQLAQRLKTEREARGWSLSELAERSGVSKAMISKIERDEVSPTAALLGRLSGAFGLSL 65 Query: 59 FK-ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + A R E L + G P G Sbjct: 66 SQLLARAEQGAGLLARAAAQPVWRDPETGFTRRALTPTAGPPTPLELVWGELPPGQAVEY 125 >gi|291543870|emb|CBL16979.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 194 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 16/45 (35%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + I R+ +T LA + G+ + +K +R Sbjct: 1 MDQIRTGSLIRRLRLEQGMTQLALAERLGVSDKAVSKWERGCGAP 45 >gi|227873925|ref|ZP_03992145.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840231|gb|EEJ50641.1| transcriptional regulator [Oribacterium sinus F0268] Length = 213 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 5/72 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I T +A G+ + + + +P S+ K+ Sbjct: 4 DIGSKIKAARMEKKFTQEQVAEVLGVSRQTISNWENGKS-----YPDIISVIKMSECYGV 58 Query: 68 TICQLLDLPFSD 79 ++ LL Sbjct: 59 SLDYLLKGEEKM 70 >gi|237731603|ref|ZP_04562084.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907142|gb|EEH93060.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 178 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 9/130 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +H + + + + + S LA + G+ + +R P+ +++K Sbjct: 1 MDNLTH-YLATTLKTLRHQREWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL---LYFPPSGSGGFFDSGVFPTGNKWNT 117 I N + P S+G T +++ + L+ S + G + Sbjct: 55 IATGLNVPFSTFISPPESEGTLTFDPQQQAMVVTPLFPWDPQLCFDHFSILLAPGALSES 114 Query: 118 VGVPEIRSPH 127 H Sbjct: 115 TPHETGVIEH 124 >gi|167465026|ref|ZP_02330115.1| Transcriptional regulator, MerR family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 181 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + +++ + L+ LA+ A + P+ ++ +R + + K L Sbjct: 5 DIGKKVEKYRKAKGLSSRELAKLAEITPSMLSQIERGLANPSIQTLKV--LAKTLDVPTF 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K++K I S F + N VP S Sbjct: 63 SFLLEETNTDDLIVRSSKRKKMIIDNLSYELLSPDFTGNLATAIMN------VPPNTSSS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + A + ++ + Sbjct: 117 EKLLAHRGEEVAFILEG 133 >gi|320530460|ref|ZP_08031518.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas artemidis F0399] gi|320137293|gb|EFW29217.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas artemidis F0399] Length = 93 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I EA+ LT LA K+G+ + +K + PS ++ ++ A Sbjct: 30 IIEAMIDARAAAGLTQKELAEKSGIAQSDISKLENGNAN-----PSLRTLQRLAAGMGMR 84 Query: 69 IC 70 + Sbjct: 85 LH 86 >gi|297163316|gb|ADI13028.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 101 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 24/82 (29%), Gaps = 5/82 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ LAR+ G+ + + P +++ + A + Sbjct: 24 GAFLKKARRSRGMSQRALARELGVSQARIAQIENGAST-----PQIDTMAAYITALGGEL 78 Query: 70 CQLLDLPFSDGRTTEKKEKEIP 91 D +TT + Sbjct: 79 TLRADFHDHVTQTTWPQPHTTE 100 >gi|297560849|ref|YP_003679823.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845297|gb|ADH67317.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 198 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 11/146 (7%) Query: 1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M + + + I + + LA++A L +S ++ + R + Sbjct: 1 MMPMTQEDGELDGLVRRRIRALRVAQGWSLEELAKRAHLSQSSLSRIENG-----RRRLA 55 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + A + T+ QL++ D + + + +P G G T Sbjct: 56 LDQLVTLARALDTTLDQLVETADDDVVISPMVDGARGRMRWPVKGDPGMSVVRQRVTEPP 115 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140 + + + T Sbjct: 116 PDNPARMRAHPGREWLVVLSGTATLM 141 >gi|288818628|ref|YP_003432976.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|288788028|dbj|BAI69775.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|308752218|gb|ADO45701.1| transcriptional regulator of molybdate metabolism, XRE family [Hydrogenobacter thermophilus TK-6] Length = 336 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + L+ LA+ G+ ++ + + PS E K+ A T+ +L Sbjct: 5 VKEYRLKRGLSQEELAKLCGMPRSTLSAIESGRAV-----PSVEYAIKLSKALGCTVEEL 59 Query: 73 LDLPF 77 Sbjct: 60 FGEEE 64 >gi|253578955|ref|ZP_04856226.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849898|gb|EES77857.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 184 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 5/118 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + +L S L + + + +R + PSTE + + Sbjct: 3 IGKRIKELRTEADLLQSELGKAVAVSSQVISNIERGYTK-----PSTELVNRCAKYFGVP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 LL TTE+KE + T ++ +I + Sbjct: 58 ADYLLGRTTEKYSTTEQKEAPALSAKIKDRMDQLQLNPSDLITKSEIPEDSFEDIMTG 115 >gi|239939715|ref|ZP_04691652.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239986200|ref|ZP_04706864.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291443141|ref|ZP_06582531.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291346088|gb|EFE72992.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 190 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 40/157 (25%), Gaps = 21/157 (13%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ + + + R T LA ++G+ + ++ PS + Sbjct: 1 MSDLDQLTQSLARNLKRWRGERGFTLDALAARSGVSRGMIIQIEQARTN-----PSVGTT 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSG 107 K+ A I LLD + + + + + + Sbjct: 56 VKLADALGVAITTLLDHEQGPQVRLVPESRAVRMWSTEAGSSTTLLVGAEARGPLELWTC 115 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 G + PE + + + + Sbjct: 116 RLMPGEGTTSDPHPEGTVE---LLHVTEGELALQVDG 149 >gi|224148667|ref|XP_002336695.1| predicted protein [Populus trichocarpa] gi|222836536|gb|EEE74943.1| predicted protein [Populus trichocarpa] Length = 63 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + + LA G+ + N + + P +I ++ Sbjct: 5 IRELRAERGWSQAALADLLGVSRQTVNAIETGRYD--PSLPLAFAIARVFE 53 >gi|17547851|ref|NP_521253.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430156|emb|CAD16841.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 209 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 52/172 (30%), Gaps = 9/172 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA + G+ + + +R P+ + K+ A Sbjct: 17 NERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAA-----SPTAVVLDKLAAGL 71 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ L + + P+ + + V V Sbjct: 72 GVSLASLFGGEREGVPAQPLMRRAQQAQWRDPASGYVRRNLSPPDWPSPIQLVEVNFPA- 130 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177 Y ++ + Q + D+++ + +++ GD L ++ Sbjct: 131 GARVAYETGGRENAMQQQVWVIDGRI---DVMLGDQRHELHPGDCLAMRLDQ 179 >gi|15841500|ref|NP_336537.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31793197|ref|NP_855690.1| regulatory protein [Mycobacterium bovis AF2122/97] gi|121637901|ref|YP_978124.1| regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148823233|ref|YP_001287987.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|215404173|ref|ZP_03416354.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215411712|ref|ZP_03420508.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215427378|ref|ZP_03425297.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215430939|ref|ZP_03428858.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215446234|ref|ZP_03432986.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218753734|ref|ZP_03532530.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219557982|ref|ZP_03537058.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224990395|ref|YP_002645082.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798930|ref|YP_003031931.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254232188|ref|ZP_04925515.1| hypothetical protein TBCG_01970 [Mycobacterium tuberculosis C] gi|254364835|ref|ZP_04980881.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|260186992|ref|ZP_05764466.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260201123|ref|ZP_05768614.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260205300|ref|ZP_05772791.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289443512|ref|ZP_06433256.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289447635|ref|ZP_06437379.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289554202|ref|ZP_06443412.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289570123|ref|ZP_06450350.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289574694|ref|ZP_06454921.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289746033|ref|ZP_06505411.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289750599|ref|ZP_06509977.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289754123|ref|ZP_06513501.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289758134|ref|ZP_06517512.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|289762171|ref|ZP_06521549.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294996956|ref|ZP_06802647.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297634592|ref|ZP_06952372.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297731580|ref|ZP_06960698.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298525519|ref|ZP_07012928.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306780036|ref|ZP_07418373.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306784784|ref|ZP_07423106.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306789142|ref|ZP_07427464.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306793476|ref|ZP_07431778.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306797860|ref|ZP_07436162.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306803740|ref|ZP_07440408.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306808314|ref|ZP_07444982.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306968138|ref|ZP_07480799.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|313658913|ref|ZP_07815793.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|13881742|gb|AAK46351.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31618789|emb|CAD96893.1| hypothetical regulatory protein [Mycobacterium bovis AF2122/97] gi|121493548|emb|CAL72022.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601247|gb|EAY60257.1| hypothetical protein TBCG_01970 [Mycobacterium tuberculosis C] gi|134150349|gb|EBA42394.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148721760|gb|ABR06385.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224773508|dbj|BAH26314.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253320433|gb|ACT25036.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289416431|gb|EFD13671.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289420593|gb|EFD17794.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289438834|gb|EFD21327.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289539125|gb|EFD43703.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289543877|gb|EFD47525.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289686561|gb|EFD54049.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289691186|gb|EFD58615.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289694710|gb|EFD62139.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289709677|gb|EFD73693.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713698|gb|EFD77710.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|298495313|gb|EFI30607.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308327075|gb|EFP15926.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308330516|gb|EFP19367.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308334351|gb|EFP23202.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308338152|gb|EFP27003.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308341844|gb|EFP30695.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308345332|gb|EFP34183.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308349633|gb|EFP38484.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308354263|gb|EFP43114.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|323719420|gb|EGB28548.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326903630|gb|EGE50563.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328458685|gb|AEB04108.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 346 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + LT LA GL + N+ + +R P + K+ Sbjct: 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESG-----DRDPDQHIVAKLAEILG 56 >gi|312864492|ref|ZP_07724723.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] gi|311099619|gb|EFQ57832.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] Length = 137 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++ + + LA G+ + +K + P S ++ + Sbjct: 2 INKTIQSLRKKADYSQETLAEMVGVSRQTLSKWELGES-----LPDIISSSRLAEIFEIS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 + +L+ + + K Sbjct: 57 LDELVKGDELPFMSKPTEGKY 77 >gi|326791080|ref|YP_004308901.1| hypothetical protein Clole_1987 [Clostridium lentocellum DSM 5427] gi|326541844|gb|ADZ83703.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 194 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 +K+ E I + LT LA + + +K +R Sbjct: 4 EKVGELIRSLRIECGLTQKQLADAMNISDKTVSKWERGLG 43 >gi|268609658|ref|ZP_06143385.1| HTH domain protein [Ruminococcus flavefaciens FD-1] Length = 298 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 6/105 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + LT LA + + P + +K + + +P E + +I N ++ Sbjct: 9 KNLVKRRKELGLTQEQLAVRLNVSPQAVSKWEN------SSYPDGELLPRIARELNISLD 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + + +K + PP F ++ + Sbjct: 63 ALFGIKIENNERDIEKLVSDEMRITPPEKRAELFMKLMYSAMYAY 107 >gi|256849871|ref|ZP_05555302.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256713360|gb|EEU28350.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 71 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R + LT LA + G T+ ++ + +PS + +I Sbjct: 6 LGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLS-----FPSKRRLSEIAHFLGVK 60 Query: 69 ICQ 71 + Sbjct: 61 VDW 63 >gi|268592412|ref|ZP_06126633.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312199|gb|EFE52652.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 129 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 18/39 (46%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 ++I + + + L+ S LA+K + ++ +R Sbjct: 19 EQIGMELSHLRKEKGLSGSDLAKKLKISQQQISRYERGI 57 >gi|147678027|ref|YP_001212242.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146274124|dbj|BAF59873.1| predicted transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 283 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 12/208 (5%) Query: 16 MAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA---------AT 65 +A + + R+A +DP ++ R I+ + + A Sbjct: 12 LARAKGDRSINSYGRQAKVDPGYISRLLRLKIKTPPSPGIIKKLADNALAGVTYEELMAA 71 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + ++K L P + + T PE Sbjct: 72 AGYLQYPAGSEELYHIKDALEQKVAEALQKPLAEFLPVMKVPLVSPLACNLTGESPENII 131 Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 + + D + +D +M GD+ I Q G+ ++ G + Sbjct: 132 RYISVPRELEADFALEIKDDAMIEAGIFPGDVAICRKTSQFKTGEMIVAALAGGKVGI-R 190 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDI 212 + S+ L + N V++ D+ Sbjct: 191 FLLEEAGSLRLRAANALILDREVKLPDV 218 >gi|42519383|ref|NP_965313.1| signal peptidase I [Lactobacillus johnsonii NCC 533] gi|41583671|gb|AAS09279.1| signal peptidase I [Lactobacillus johnsonii NCC 533] Length = 213 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186 + + SM P + D +I ++ GD +++ G + K +I Sbjct: 28 FFVLNKYVFANLTVSGISMQPTFENNDRVIALRHAKIKEGDIVIVDAPDEPGAVYIKRVI 87 Query: 187 SRRGRSID 194 G +I Sbjct: 88 GLPGDTIV 95 >gi|16080419|ref|NP_391246.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str. 168] gi|221311316|ref|ZP_03593163.1| hypothetical protein Bsubs1_18266 [Bacillus subtilis subsp. subtilis str. 168] gi|221315643|ref|ZP_03597448.1| hypothetical protein BsubsN3_18182 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320559|ref|ZP_03601853.1| hypothetical protein BsubsJ_18150 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324843|ref|ZP_03606137.1| hypothetical protein BsubsS_18301 [Bacillus subtilis subsp. subtilis str. SMY] gi|296330426|ref|ZP_06872906.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675972|ref|YP_003867644.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii str. W23] gi|81637534|sp|O32236|RGHR_BACSU RecName: Full=HTH-type transcriptional repressor rghR; AltName: Full=RapGH repressor gi|2635879|emb|CAB15371.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str. 168] gi|2702241|gb|AAB91590.1| Yvan [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|291485899|dbj|BAI86974.1| hypothetical protein BSNT_05102 [Bacillus subtilis subsp. natto BEST195] gi|296152429|gb|EFG93298.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414216|gb|ADM39335.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii str. W23] Length = 135 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 1/94 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E + + E LT + LA +G+ ++ + G + + + + + L Sbjct: 2 ESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKR-GVPKPATIKKLAEALKIPY 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 E + E + LL + Sbjct: 61 EGLMYKAGYIEEVHEARAPYETKCKLLEKAEAYD 94 >gi|298252935|ref|ZP_06976729.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1] gi|297533299|gb|EFH72183.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1] Length = 158 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +R LT + L+ K G+ + ++ + +R P+ + +I A N Sbjct: 101 ARKRAGLTQAELSEKTGISQSDISRLENG-----SRNPTIALLNRIANALN 146 >gi|291296947|ref|YP_003508345.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290471906|gb|ADD29325.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 230 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M++ + + + + + L+ LA AGL T ++ +R R S +++ + Sbjct: 1 MSTL-RTLLAQNLRTLRYQRGLSQEDLADLAGLHRTYVSEVERG-----KRNLSLDNLER 54 Query: 61 ILAATN 66 + A Sbjct: 55 LANALQ 60 >gi|283783609|ref|YP_003374363.1| toxin-antitoxin system, antitoxin component, Xre family [Gardnerella vaginalis 409-05] gi|283442067|gb|ADB14533.1| toxin-antitoxin system, antitoxin component, Xre family [Gardnerella vaginalis 409-05] Length = 94 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +R LT + L+ K G+ + ++ + +R P+ + +I A N Sbjct: 37 ARKRAGLTQAELSEKTGISQSDISRLENG-----SRNPTIALLNRIANALN 82 >gi|134097736|ref|YP_001103397.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006304|ref|ZP_06564277.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910359|emb|CAM00472.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 399 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I E I +R L+ LA G + ++ +R +R + ++L Sbjct: 1 MVTEGPIGERIRIYRQRRGLSQKELAHLVGRSESWLSQVERGIRS-VDRLSVLVDVARVL 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 ET+ +G+ + ++I + Sbjct: 60 KTDVETLAGYRMAYAPNGQPELEGLEDIRQAMSAYA 95 >gi|70730070|ref|YP_259809.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344369|gb|AAY91975.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 208 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + +R LT S LA+++ L ++ +R +PS ++F I + T Sbjct: 29 LGTRIRGLRKRRGLTLSELAQQSELTAGYISQLERNLA-----YPSIPALFNIARSLGVT 83 Query: 69 ICQLLDLPFSDGRTTE 84 I + Sbjct: 84 IQWFFASETQTAPEDQ 99 >gi|28210633|ref|NP_781577.1| putative transcriptional regulator [Clostridium tetani E88] gi|28203071|gb|AAO35514.1| putative transcriptional regulator [Clostridium tetani E88] Length = 126 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + ++ + N + LA G+ + +K + P ++ K+ N Sbjct: 2 EISERLQQLRKLANYSQEQLADMLGVSRQAISKWESGQSN-----PDISNVIKLSGIYNV 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|320535687|ref|ZP_08035776.1| peptidase S24-like domain protein [Treponema phagedenis F0421] gi|320147447|gb|EFW38974.1| peptidase S24-like domain protein [Treponema phagedenis F0421] Length = 300 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 30/271 (11%), Positives = 62/271 (22%), Gaps = 81/271 (29%) Query: 6 HKKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIE----------------- 47 +K+ I + E+ NL + A G+ + +K +R Sbjct: 5 QEKVGCRIKFIREKIFNLNQTKFADLLGITQATLSKYERGETSFPDELKFFLGEKGINSH 64 Query: 48 ---------------GRNRWPSTESIFKILAA---------------------------- 64 + P I KI Sbjct: 65 WLLTGEGEPCVKEETEPPKPPILAEIEKIAENAVAAKLGKHDEQFEALAERQQAIEQEQQ 124 Query: 65 -TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE- 122 + +++ L + + ++ + +G + G + T +P Sbjct: 125 KLRQEWEEIIQLYSPENMKKPENPRKSIIRTMGSTGEVHERLAYYGADGEEEETEDLPLA 184 Query: 123 ---------------IRSPHNGIYAIQTQDTRH-KTQDTSM-LPLYRKGDILILNSAIQV 165 P + + K + TSM G ++L Sbjct: 185 ENLAAGFPIEAFDNYETYPVPKRFLKKRHKYCVAKIKGTSMTAAGIADGSHVLLEYCDSP 244 Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 G +++K K L L+ Sbjct: 245 VNGSIMVVKYGEN-TTLKRLHQTDEGEWQLL 274 >gi|302380564|ref|ZP_07269029.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|303234052|ref|ZP_07320701.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302311507|gb|EFK93523.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302494977|gb|EFL54734.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 179 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + + LT LA ++ L ++ +R PS +S+ +L A Sbjct: 2 EIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLT-----SPSVDSLNYVLNALGT 56 Query: 68 TI 69 + Sbjct: 57 DM 58 >gi|254519819|ref|ZP_05131875.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226913568|gb|EEH98769.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 179 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I R+ LT LA + L ++ + PS ++ IL Sbjct: 2 EIGEKIRRLRIEKQLTQEELANRCELSKGFISQVENDLT-----SPSIATLIDILEILGT 56 Query: 68 TICQLL 73 + + Sbjct: 57 NLTEFF 62 >gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseburia intestinalis L1-82] gi|257201706|gb|EEU99990.1| transcriptional regulator [Roseburia intestinalis L1-82] Length = 170 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 8/82 (9%), Positives = 24/82 (29%), Gaps = 5/82 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + +R ++ LA + +K + P + ++ A + Sbjct: 30 DNIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESI-----PDVIACDRMAEAFGVALE 84 Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92 +L + + + Sbjct: 85 DMLHYEEKNKSLPLPPKGKHMF 106 >gi|169824259|ref|YP_001691870.1| Cro/CI family transcriptional regulator [Finegoldia magna ATCC 29328] gi|167831064|dbj|BAG07980.1| putative transcriptional regulator Cro/CI family [Finegoldia magna ATCC 29328] Length = 179 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + + LT LA ++ L ++ +R PS +S+ +L A Sbjct: 2 EIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLT-----SPSVDSLNYVLNALGT 56 Query: 68 TI 69 + Sbjct: 57 DM 58 >gi|167769076|ref|ZP_02441129.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM 17241] gi|167668716|gb|EDS12846.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM 17241] Length = 184 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 47/170 (27%), Gaps = 21/170 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ LA + GL + ++ +R + PS ++ I AA Sbjct: 5 DIGSVLQASRGEKKISLRQLAERTGLTASMLSQIERNLVN-----PSINTLKVIAAALEI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKWN 116 + + +D +++ I L L F P N + Sbjct: 60 PMYKFFMGGGADKNLVVRRDARITLGRPEAEDIVYELLTANVSGSIEFCMMHIPAKNGSH 119 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 V I Y Q + + GD +++ Sbjct: 120 NVE--SIHKGEEVAYVAQGKI-TVYINGAAYE--LETGDSVLIPPGSVHR 164 >gi|89097350|ref|ZP_01170240.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088173|gb|EAR67284.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 107 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E + R+ + ++ S LA +AG+ + + +R PS + + KI A + Sbjct: 2 IGERVKRLRQERKMSLSELAEQAGVAKSYLSSLERNLQT----NPSIQFLEKISAVLH 55 >gi|158317409|ref|YP_001509917.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158112814|gb|ABW15011.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 490 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 4/91 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + H LT LA G D + +K + GR ++ I + Sbjct: 20 IGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVE----SGRRAIHDISTLRHIARNLGLS 75 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 + P + + + S Sbjct: 76 PEDVGLAPGGLADRRREPPRGSAVEKVAGSQ 106 >gi|298290822|ref|YP_003692761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296927333|gb|ADH88142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 471 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 5/73 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + +I + R+ ++ + LA G+ + N + R + + K+ Sbjct: 4 TEPRIGSRVQRLRRAKRVSQADLAVALGISASYLNLIEHN-----RRRITVPLLMKLAGY 58 Query: 65 TNETICQLLDLPF 77 +L++ Sbjct: 59 FGIEPGELVENDE 71 >gi|295107575|emb|CBL05118.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 143 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I R+ + T LA G+ S K + + P + I + L Sbjct: 2 KVGEKIQRIRKERGYTADQLAEMLGISAVSLRKYEYGERT--PKDPMIDEIARCLEVNPS 59 Query: 68 TICQLL 73 ++ Sbjct: 60 SLKSDW 65 >gi|283836086|ref|ZP_06355827.1| hypothetical protein CIT292_10505 [Citrobacter youngae ATCC 29220] gi|291068273|gb|EFE06382.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 99 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 9/64 (14%) Query: 5 SHKKIWE---------AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 S ++I E A++ + E NL+ + LA G+ + K ++ + R Sbjct: 15 SQERIAEKVEVLRQAVALNMLREELNLSQAELASAMGVKQPTIAKMEQADNDPRLSTLKR 74 Query: 56 ESIF 59 Sbjct: 75 YVAA 78 >gi|271966030|ref|YP_003340226.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509205|gb|ACZ87483.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 197 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 34/143 (23%), Gaps = 3/143 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + +T + LA G+ ++ ++ + + + Sbjct: 6 DAVGPRLRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLEL--LLPLARTYDVPL 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + G + P V P+ Sbjct: 64 DDLVGAPRTGDPRIHLKPILRFGMTFVPLSRRPGGVQAFKMIIPA-QPEPLVPTPQTHDG 122 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP 149 +Y + + + LP Sbjct: 123 FEWLYVLNGRLRLILGERDLTLP 145 >gi|227890248|ref|ZP_04008053.1| possible signal peptidase I [Lactobacillus johnsonii ATCC 33200] gi|227849062|gb|EEJ59148.1| possible signal peptidase I [Lactobacillus johnsonii ATCC 33200] Length = 216 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186 + + SM P + D +I ++ GD +++ G + K +I Sbjct: 31 FFVLNKYVFANLTVSGISMQPTFENNDRVIALRHAKIKEGDIVIVDAPDEPGALYIKRVI 90 Query: 187 SRRGRSID 194 G +I Sbjct: 91 GLPGDTIV 98 >gi|206975059|ref|ZP_03235973.1| HTH-type transcriptional regulator xre (Putative PbsX repressor) [Bacillus cereus H3081.97] gi|217959610|ref|YP_002338162.1| putative DNA-binding protein [Bacillus cereus AH187] gi|229138835|ref|ZP_04267416.1| transcriptional regulator [Bacillus cereus BDRD-ST26] gi|206746480|gb|EDZ57873.1| HTH-type transcriptional regulator xre (Putative PbsX repressor) [Bacillus cereus H3081.97] gi|217065315|gb|ACJ79565.1| putative DNA-binding protein [Bacillus cereus AH187] gi|228644751|gb|EEL01002.1| transcriptional regulator [Bacillus cereus BDRD-ST26] Length = 117 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 9/63 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 F+H++ + + ++ ++ LA G+ S + R ++ KI Sbjct: 1 MFNHER----LKSLIDKKGISQQQLADAIGVSHVSVYNYVEGKKKPGIR-----TLQKIA 51 Query: 63 AAT 65 Sbjct: 52 KHL 54 >gi|118445204|ref|YP_891173.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196047678|ref|ZP_03114883.1| transcriptional regulator [Bacillus cereus 03BB108] gi|118419765|gb|ABK88183.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196021503|gb|EDX60205.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 116 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 8/111 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + +T L G+ + + ++ + P ES+ KI T Sbjct: 2 IGEKIKELRKNSKMTQEQLGDAIGVSKMAISYFEKG-----KKSPGRESLEKIADYFGVT 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 LL E+ + + + W + Sbjct: 57 TDYLLGRSEDPELNEEEDKTVSEEGKNILAIIESLPEDERKKA---WEQLE 104 >gi|121610046|ref|YP_997853.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554686|gb|ABM58835.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 87 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ S I E + L+ LA++AG+ T+ + + S ++ + Sbjct: 1 MTTLS--DIAEMLKGARRDARLSQDELAQRAGVSRTTVARMENLSKG----DMSVSALVR 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 +L A+ + + ++++ L Sbjct: 55 LLEASGYDLKLVKPGHVRTVEDILAEQRQGDLP 87 >gi|23098993|ref|NP_692459.1| signal peptidase I [Oceanobacillus iheyensis HTE831] gi|22777221|dbj|BAC13494.1| signal peptidase I [Oceanobacillus iheyensis HTE831] Length = 193 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 11/104 (10%) Query: 116 NTVGVP-EIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAI----QVNCGD 169 + + + ++ + SM P D +I+N + D Sbjct: 12 EWLDWIKALLVAFGLAFLVRMFLFAPIIVEGPSMFPTLHDRDQMIVNKLSYTIGEPERFD 71 Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 ++ T K +I+ G + + N Y + ++E Sbjct: 72 IVVFHAPTQKDFIKRIIALPGEHVAVE-DNKLY----INGEEVE 110 >gi|253699444|ref|YP_003020633.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774294|gb|ACT16875.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 106 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + + I + + L+ LA G++P ++ + +PS + + +I A Sbjct: 4 TKELLGARIKELRKGRKLSQEELAELIGIEPRHMSRIEVGKS-----YPSLDRLERIAMA 58 Query: 65 TNETICQLLDLPFSDGRT 82 N + D + R Sbjct: 59 LNVDLRDFFDFAHLEARP 76 >gi|168207181|ref|ZP_02633186.1| helix-turn-helix domain protein [Clostridium perfringens E str. JGS1987] gi|170661419|gb|EDT14102.1| helix-turn-helix domain protein [Clostridium perfringens E str. JGS1987] Length = 145 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + + T LA++AGL ++ ++ G+ + P+ +++ K+ A T+ Sbjct: 5 EIIQNLMDSKGWTKYRLAKEAGLGQSTVHEIM----SGKKKSPNAKTLQKLATALGVTVD 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + S + KE++ L Sbjct: 61 TFFNDDSSPNESKANKERDYSLTIKEQ 87 >gi|167462393|ref|ZP_02327482.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 41/171 (23%), Gaps = 5/171 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIF 59 M + K++ I ++ E LT LA + + + + + ++ Sbjct: 1 MNNLEKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRST--PPSDVLRNLA 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTV 118 I + + + + + + + + D G Sbjct: 59 DIFNVSADYLLGRGGNDEFVTPPEDNQGGAVSEIGWAIKLERQSQDMTQKELGKQVGENQ 118 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 T D + S P + + S GD Sbjct: 119 RQISSYELDLKPVPEHTLDKIMEVFGLSF-PEFLAKYNMWDESIHPHFDGD 168 >gi|154505562|ref|ZP_02042300.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] gi|153794220|gb|EDN76640.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] Length = 107 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 5/78 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +L+ LA + G+ ++ + ++ R P + + KI L Sbjct: 8 LKTLRTDKHLSQQELATRLGISKSAVSMYEQG-----RREPDFDILNKIADIFQVDADYL 62 Query: 73 LDLPFSDGRTTEKKEKEI 90 L Sbjct: 63 LGRSSLSHEPEPVTIAAH 80 >gi|153852685|ref|ZP_01994122.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814] gi|149754327|gb|EDM64258.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814] Length = 83 Score = 45.9 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 5/81 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + + R + + + + AG+ + ++ +R PS K+ Sbjct: 8 HLPLLNRLKEYRSRLGVNQTEMGKLAGVSRQTISQIERGDY-----SPSVTLALKLAKIC 62 Query: 66 NETICQLLDLPFSDGRTTEKK 86 + + ++K Sbjct: 63 EVNVEDIFIYEEEINDEGKEK 83 >gi|332285621|ref|YP_004417532.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] gi|330429574|gb|AEC20908.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] Length = 187 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 17/171 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + ++ + L+++ GL + +K +R E PS ++ K+ A Sbjct: 3 EISFRLKALRRQYQFSLEQLSQRTGLTKSYLSKLERGVSE-----PSISTVLKLAQAYEI 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG------NKWNTVGVP 121 + QL+ + G G V P Sbjct: 58 GVSQLIGTGEGGESEAISVVRRNEREPLDRQGQARTGYRYEAMAGKRLVKAMDPFIVYPP 117 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM------LPLYRKGDILILNSAIQVN 166 + + + ++ + T + GD + +S + Sbjct: 118 RAGEAASSSFPHEGEEFMLVLKGTVLITVGGQEHRLSAGDSIYFDSELPHK 168 >gi|331092326|ref|ZP_08341153.1| hypothetical protein HMPREF9477_01796 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401559|gb|EGG81142.1| hypothetical protein HMPREF9477_01796 [Lachnospiraceae bacterium 2_1_46FAA] Length = 102 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I E I R+ +NL+ LAR + ++ + P E + K+ Sbjct: 1 MEEQTNIGEKIKRIRRENNLSQEDLARSLHTSRQTVSRWETNRSV-----PDLEMLEKVA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + LLD+ + +++ + L Sbjct: 56 FIFEMEVKDLLDVKMVNKNQEKQETLDSYLP 86 >gi|325568823|ref|ZP_08145116.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157861|gb|EGC70017.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 182 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 9/100 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +I E + + + NLT L + L ++ +R PS E+ F Sbjct: 1 MNM----EIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLS-----SPSMETFFT 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 IL T + + + ++E Sbjct: 52 ILEVLGVTPEEFFREENAQHQVVYREEDSTLYYDEENGYE 91 >gi|262281939|ref|ZP_06059708.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262262393|gb|EEY81090.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 210 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 KLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ E + Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIEHRRI 82 >gi|257877436|ref|ZP_05657089.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811602|gb|EEV40422.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] Length = 201 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 9/100 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +I E + + + NLT L + L ++ +R PS E+ F Sbjct: 20 MNM----EIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLS-----SPSMETFFT 70 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 IL T + + + ++E Sbjct: 71 ILEVLGVTPEEFFREENAQHQVVYREEDSTLYYDEENGYE 110 >gi|259909785|ref|YP_002650141.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|224965407|emb|CAX56939.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|283479880|emb|CAY75796.1| putative HTH-type transcriptional regulatory protein PF1851 [Erwinia pyrifoliae DSM 12163] Length = 133 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + E + R+ + +T S LA K + + + R + S + +I + Sbjct: 26 LGERMTRLRKEQGITQSELADKLNVSQQTVQAWEAGRR--RIKVSSLPFVAQIFSVP 80 >gi|170747509|ref|YP_001753769.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654031|gb|ACB23086.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 186 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + RH L+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DVGARLRFVRARHGLSQRTLAKRAGVTNSAISLIE-----ANRVNPSVGALKRILDGVPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|117924636|ref|YP_865253.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117925852|ref|YP_866469.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117926017|ref|YP_866634.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117608392|gb|ABK43847.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] gi|117609608|gb|ABK45063.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] gi|117609773|gb|ABK45228.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] Length = 104 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 18/81 (22%) Query: 4 FSHKKIW----EAIDRM-------------AERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 +H ++ EA D + + LT +A++ G ++ ++ + Sbjct: 16 LTHARLKPGFSEAYDALEDEFQALRTFLSARKEAGLTQEEIAKRMGTTKSAVSRLESSLG 75 Query: 47 EGRNRWPSTESIFKILAATNE 67 + PS ++ K A Sbjct: 76 D-HKHSPSIATLRKYAKAVGC 95 >gi|326388765|ref|ZP_08210354.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206789|gb|EGD57617.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 190 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 7/133 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I AI +R +T LA +GL ++ +R PS S+ I AA Sbjct: 16 IGAAIRDRRKRLGMTLQALATASGLSAPFLSQVERDLA-----MPSLVSLTAIAAALGVE 70 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + P + E+ + P + + VP + Sbjct: 71 MSYFVGTPPPGQVVRRGNQPELLQIGAPAVYARLSGRHEERKMEAL--HITVPPGLASPL 128 Query: 129 GIYAIQTQDTRHK 141 + + Sbjct: 129 ARREGEGFWYVLE 141 >gi|227890195|ref|ZP_04008000.1| cI repressor [Lactobacillus johnsonii ATCC 33200] gi|227849290|gb|EEJ59376.1| cI repressor [Lactobacillus johnsonii ATCC 33200] Length = 122 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 22/45 (48%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 ++ +I +D + + N++ + LAR GL +S ++ + Sbjct: 1 MRNNDEIVAYVDNLRKSQNMSLNELARATGLAKSSLSRYFNKTRD 45 >gi|227873617|ref|ZP_03991855.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840535|gb|EEJ50927.1| transcriptional regulator [Oribacterium sinus F0268] Length = 158 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I ++ LT A + G+ S ++ + ST+ I +I A + Sbjct: 2 IGENIRKLRHTQGLTQPEFAERIGVSRNSLSRYENGSSP-----ISTDIIDRICQAFQVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 +++ E + L+ + Sbjct: 57 YREIVGEEKMINPLEEYQLSSKIDLFKERA 86 >gi|284029088|ref|YP_003379019.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808381|gb|ADB30220.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 195 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 7/137 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + +I + RM E+ ++T + L+R G+ ++ ++ + R PS E + I AA Sbjct: 10 TISQIAPRLRRMREKKSVTLAELSRTTGISTSTLSRLESGQ-----RKPSLELLLPIAAA 64 Query: 65 TNETICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + ++ P + + L+ S G + + P + Sbjct: 65 LAVPLDDIVAAPRVVDPRVPQNAGRSNGRLFVSLSRDQGEPKAFKLTIPA-SDNEPSPRV 123 Query: 124 RSPHNGIYAIQTQDTRH 140 + H +Y + + Sbjct: 124 HAGHEWLYVLTGRLRLV 140 >gi|229821739|ref|YP_002883265.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567652|gb|ACQ81503.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 513 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I I + LT + LA + G ++ + ++ S E + +I A Sbjct: 13 EIGALIRGARQNKGLTQAQLAERLGTSQSAIARIEQGSQN-----LSVELLTRINRALE 66 >gi|325697585|gb|EGD39470.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] Length = 205 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKARGISQEGLAEQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82 >gi|322391296|ref|ZP_08064766.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145722|gb|EFX41113.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 150 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ + H LT LA G+ S++ + E P+ E++ K+ N T Sbjct: 4 LGENLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTE-----PTLENVVKLANIFNTT 58 Query: 69 ICQL 72 Sbjct: 59 TDYF 62 >gi|317502031|ref|ZP_07960214.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896573|gb|EFV18661.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 293 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I ++ L+ +A K G+ + K + P ++ I ++ Sbjct: 5 EQIKYYRKQAGLSQEKMAEKIGVSRQAITKWENGTGT-----PDIANLMAIANLFQISVD 59 Query: 71 Q 71 + Sbjct: 60 E 60 >gi|313893962|ref|ZP_07827528.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441526|gb|EFR59952.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] Length = 91 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + E LT LA K+G+ ++ + ++ S ++ KI A Sbjct: 36 IAKAREAAGLTQRDLAEKSGVPQSTIARIEQGANT------SISTLCKIAFAL 82 >gi|312126619|ref|YP_003991493.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776638|gb|ADQ06124.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 118 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 5/92 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +KKI E + + ++ T +A+ G+ + + R S ++ Sbjct: 1 MKEEVYKKIGEKLRELRKQRGFTQEQVAKYLGITQEQLSYYETGA-----REISVATLQA 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + LL + + Sbjct: 56 LARLYGCDYNYLLSDDEQLNTQVAINFRADEI 87 >gi|310640785|ref|YP_003945543.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245735|gb|ADO55302.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 124 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I++ I+ + + +T ++ G+ +F KR P T + +I + N Sbjct: 2 QSIYQRIEELIKERGMTKKAFCQQLGISTGNFGDWKRGKTT-----PGTNKLIEIASFFN 56 Query: 67 ETICQLL 73 ++ ++ Sbjct: 57 ASLDWIM 63 >gi|238061301|ref|ZP_04606010.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883112|gb|EEP71940.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 481 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + ++ LA +AG+ ++ +R R PS E + ++ +A Sbjct: 9 DVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERG-----LRKPSAEVLQQLASALRV 63 Query: 68 TICQLL 73 + + Sbjct: 64 STPAMY 69 >gi|224543830|ref|ZP_03684369.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] gi|224523249|gb|EEF92354.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 5/72 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I LT +A G+ + + + +P S+ K+ + Sbjct: 4 DIGSKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 58 Query: 68 TICQLLDLPFSD 79 ++ LL Sbjct: 59 SLDYLLKGEEKM 70 >gi|222100228|ref|YP_002534796.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359] gi|221572618|gb|ACM23430.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359] Length = 113 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + + HNLT LA+K G+ + +K + R + KI+AA Sbjct: 37 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIR-----VLAKIVAALG 90 >gi|183980823|ref|YP_001849114.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174149|gb|ACC39259.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 138 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E +++ LA ++G+ ++ +R R PS + + +I A Sbjct: 20 DIGSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLAQIAKALRV 74 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L + + +++ + Sbjct: 75 SAEVLYVRAGILEPSETSQVRDVIITDTA 103 >gi|170289284|ref|YP_001739522.1| XRE family transcriptional regulator [Thermotoga sp. RQ2] gi|170176787|gb|ACB09839.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2] Length = 110 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + + HNLT LA+K G+ + +K + R + KI+AA Sbjct: 34 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIR-----VLAKIVAALG 87 >gi|148270580|ref|YP_001245040.1| helix-turn-helix domain-containing protein [Thermotoga petrophila RKU-1] gi|281412888|ref|YP_003346967.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|147736124|gb|ABQ47464.1| helix-turn-helix domain protein [Thermotoga petrophila RKU-1] gi|281373991|gb|ADA67553.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 127 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + + HNLT LA+K G+ + +K + R + KI+AA Sbjct: 34 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIR-----VLAKIVAALG 87 >gi|15644083|ref|NP_229132.1| LacI family transcriptional regulator [Thermotoga maritima MSB8] gi|4981889|gb|AAD36402.1|AE001787_7 lacI family transcriptional regulator, putative [Thermotoga maritima MSB8] Length = 111 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + + HNLT LA+K G+ + +K + R + KI+AA Sbjct: 18 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIR-----VLAKIVAALG 71 >gi|86136390|ref|ZP_01054969.1| DNA binding protein, putative [Roseobacter sp. MED193] gi|85827264|gb|EAQ47460.1| DNA binding protein, putative [Roseobacter sp. MED193] Length = 287 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 4/119 (3%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + R L+ S LAR G+D ++ ++ + R P+ + Sbjct: 7 KRLRAEQFRTRLIRALNDSGLSQSALARGTGVDRSTISQLLN---DDGARLPNAHVVGAC 63 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119 + + LL L E + L P + G K V Sbjct: 64 ASVLGVSADWLLSLSDRPESAAELMAASLSLSKAPRALVDQRIFDWHREAAGYKIRHVP 122 >gi|94313037|ref|YP_586246.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356889|gb|ABF10977.1| transcriptional regulator, Xre/Cro/CI family [Cupriavidus metallidurans CH34] Length = 212 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 10/143 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + + + LT LA++A L + +K +R P+ ++ K+ A T Sbjct: 30 IAERLAELRKLNGLTLEELAQRASLTKSYLSKLERGLS-----SPTIGTVLKLADALGVT 84 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEIR 124 + QL+ + + + P + G+ + P Sbjct: 85 VDQLITRSSRANEILHIRAA-DRIPFSPSTERLGYTYEAIATERPDKAMQPFIMVPPFTL 143 Query: 125 SPHNGIYAIQTQDTRHKTQDTSM 147 + + ++ Sbjct: 144 EEDQPMASHAGEELIFVVSGEME 166 >gi|324992103|gb|EGC24025.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324994197|gb|EGC26111.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327472822|gb|EGF18249.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 205 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGMEPVVQKEEEQSIKHRRI 82 >gi|322372600|ref|ZP_08047136.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321277642|gb|EFX54711.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 159 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + LT LA G+ S ++ + STE + +I N + Sbjct: 3 IGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTS-----AISTELLDRICQTLNVS 57 Query: 69 ICQ 71 Sbjct: 58 YVD 60 >gi|318605629|emb|CBY27127.1| transcriptional regulator yidN, Cro/CI family [Yersinia enterocolitica subsp. palearctica Y11] Length = 188 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/145 (8%), Positives = 36/145 (24%), Gaps = 6/145 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I + + + S A + G+ + +R P+ +++K Sbjct: 1 MKELTR-HIGNQLKNVRRERGWSLSQTAEQTGVSKAMLGQIERGES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + N + Q L+ P + + + + Sbjct: 55 IASGLNVSFSQFLETPPAQSAALHRHGLLTTFNSETSGMRVVPLFPYDATLRMDMFVIDL 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145 + + + + Sbjct: 115 DPGGCSESTPHEAGVIEHVIVIEGE 139 >gi|257440174|ref|ZP_05615929.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197526|gb|EEU95810.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 220 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 5/126 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + RM + LT + LA++ + + ++ +R G + E + L T + Sbjct: 7 GAFLARMRKSQGLTQAELAQQLHVTDKAVSRWERGV--GLPDINTLEPLADALGLTLADL 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF---PTGNKWNTVGVPEIRSP 126 D +D E LL S + +F W + P + Sbjct: 65 MHCRDPQEADIAPEVPLEDFFTLLRRQQSIDWRSVRAVLFWLSAALAIWGILACPGRMAV 124 Query: 127 HNGIYA 132 H + Sbjct: 125 HWRTLS 130 >gi|258654157|ref|YP_003203313.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557382|gb|ACV80324.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 187 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + L+ GLA+ AG+ S ++ + R P+ +++ + A Sbjct: 10 IGERLRAARTEQGLSVGGLAQAAGIGKGSLSEIENGT-----RNPTLSTLYGLANALGRP 64 Query: 69 ICQ 71 + Sbjct: 65 LSW 67 >gi|261363946|ref|ZP_05976829.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296314023|ref|ZP_06863964.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] gi|288567969|gb|EFC89529.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296839393|gb|EFH23331.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] Length = 120 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S K + E + ++ + + L+ G+ S + R P+ + + + Sbjct: 7 LSSKLLGERLKKIRTDNGYSREQLSELFGISRASIQNYENGE-----RSPNADYLVQFYK 61 Query: 64 ATNETICQ 71 + Sbjct: 62 HFGINLHW 69 >gi|125717272|ref|YP_001034405.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497189|gb|ABN43855.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 205 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGMEPVVQKEEEQSIKHRRI 82 >gi|172058586|ref|YP_001815046.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991107|gb|ACB62029.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 139 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I ++ ++H T LA + G TS + +R R P+T+++ ++ A N T Sbjct: 5 LGKKIMQLRKQHQYTQKHLAERCGETVTSISAYERGQ-----RMPNTQTLERLALALNTT 59 Query: 69 ICQLLDLPFSDGR 81 + L+D + Sbjct: 60 VIDLIDPQYVQHP 72 >gi|322831120|ref|YP_004211147.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321166321|gb|ADW72020.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 90 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H I + + E L+ + LAR+ G+ P + + ++ R S ++ + A Sbjct: 28 TH--IHALLQTLREDAGLSKTELARRLGITPPAITRLEK-----RPAQASFCTLSRYAQA 80 Query: 65 TNETICQLL 73 + Sbjct: 81 CGFHLYLYY 89 >gi|311899387|dbj|BAJ31795.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 188 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 20/165 (12%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ L+ LA + G+ + +K +R E PS + KI A + + Sbjct: 4 RLRALRTQNRLSLEALAAQVGVTKSYLSKVERGLSE-----PSISTALKIAEALGVEVGR 58 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIRSPHN 128 L T + E L P G G+ V P + P Sbjct: 59 LFSEEVEPELVTVVRAGERTPLGGPE----GSRYEGIAAALPGKRMVPFVMYPPLDGPVE 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + ++ Q + L + +++ GD + Sbjct: 115 AFKSHRGEEFLFVHQGRAELEFP--------DRTVRLGPGDSVYF 151 >gi|302531776|ref|ZP_07284118.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4] gi|302440671|gb|EFL12487.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4] Length = 505 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 4/71 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + E ++ LA ++G+ + ++ + R + A Sbjct: 113 EIGARLRQAREARGISQQALADESGISQSFLSRLESGARLLTGRGL----LETFAEALGC 168 Query: 68 TICQLLDLPFS 78 ++ +L P Sbjct: 169 SVAELTGRPDP 179 >gi|229145898|ref|ZP_04274277.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296503830|ref|YP_003665530.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|228637506|gb|EEK93957.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296324882|gb|ADH07810.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 374 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/206 (9%), Positives = 56/206 (27%), Gaps = 14/206 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 N +I +L+ + K F ++ + Sbjct: 56 YFNISIDELISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECRGIIKKYYSCFPL--- 112 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 I + + + + + + + + L+ + + Sbjct: 113 ---LIQIGILFINHHMLTEDTDRGI-EILEEAMNLFSRVQEESDDVSLVKEAASFQATCY 168 Query: 184 VLISRRGRSIDLMSLN--CCYPVDTV 207 ++++R + L+ +P + + Sbjct: 169 LILNRPNEVLQLLGETIRPNFPEEDL 194 >gi|254475536|ref|ZP_05088922.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214029779|gb|EEB70614.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 131 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + E +T + LAR+ G+ T+ ++ E R + +L + Sbjct: 17 GDRVAAAREAAGMTQAQLARRLGVKKTTLTGWEQDLSE--PRANKLTMMAGLLNVSMGW 73 >gi|182434296|ref|YP_001822015.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326774809|ref|ZP_08234074.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178462812|dbj|BAG17332.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655142|gb|EGE39988.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 199 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 38/133 (28%), Gaps = 6/133 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ + +T + L+ G+ ++ ++ + G R PS E + I A Sbjct: 18 VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGG-----RRPSLELMLPIARAHEVP 72 Query: 69 ICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L+ + P + G + + Sbjct: 73 LDDLVGAAPVGDPRVRAKPIVQHGRTMLPLTARPGGLQAYKLIQEPGSGGPPEQRTHEGY 132 Query: 128 NGIYAIQTQDTRH 140 ++ + + Sbjct: 133 EWLFVLSGKLRLL 145 >gi|167746155|ref|ZP_02418282.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] gi|167654670|gb|EDR98799.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] Length = 180 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 9/175 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ E+ L+ L++ +G+ + + +R P+ +++KI Sbjct: 5 VAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGN-----PTISTLWKISNGMKVP 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L P + + + E L + F + + + + Sbjct: 60 FDALTVRPKTPYEIIKTADIEPLLEDSGRVKNYPLFPDDADRKFAVY-YLKLEPYSRWES 118 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIVA 182 + T + + L + GD TG+ Sbjct: 119 EAHLKGTTEFITVFHGDLEI--CADCHKFTLTKDESIRFPGDTAHSYRNTGNDTV 171 >gi|326330368|ref|ZP_08196678.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium Broad-1] gi|325951905|gb|EGD43935.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium Broad-1] Length = 248 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 12/153 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + L+ + LA +AG + + +R + P+ + +IL AT Sbjct: 32 LQAARRVAGLSQAELAEQAGTSQATLSAYERGA-----KSPALKVAERILHATGLE---- 82 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L +++ ++ PS F + + V Sbjct: 83 --LSVRAHVDFKERSVPGIEPFWVPSMLWNVGPPTCFVILHVPDMVNHTSQIDWDLSDRV 140 Query: 133 IQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQ 164 + + + + R D L+++ + Sbjct: 141 DRARAYEILIRWGLPQAMLRWLDGALLVDLWDE 173 >gi|319788682|ref|YP_004148157.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317467194|gb|ADV28926.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 65 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 5/66 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + H + LA + + + N + + PS F+I +I + Sbjct: 5 LRALRDEHGWSQGELAERLEVSRQTVNALETGKYD-----PSLPLAFRIARLFGRSIEDV 59 Query: 73 LDLPFS 78 Sbjct: 60 FVPDEP 65 >gi|317056543|ref|YP_004105010.1| XRE family transcriptional regulator [Ruminococcus albus 7] gi|315448812|gb|ADU22376.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 63 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + LT LA G+ + N + P+ E K+ + Sbjct: 3 NRIKELRKSQKLTQDELANAVGVSRQTINAIENDKYN-----PTLELAIKLARYLRIPVE 57 Query: 71 Q 71 Sbjct: 58 D 58 >gi|296104296|ref|YP_003614442.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058755|gb|ADF63493.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 190 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/184 (11%), Positives = 49/184 (26%), Gaps = 16/184 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ I + ++ NL+ + LA+ +G+ + + + G R + +SI L Sbjct: 11 KRTYTNIGNNVKKLRIARNLSLNELAKLSGVSKATLSTLESGGSN--PRVDTLDSIASAL 68 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T + + + + + + G G + + P Sbjct: 69 RLTLGDLLGNNNERYPYIEKNSDYKGDYSQVMKFRIGQGNITEIWHLQMKPGV-VINSPA 127 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDR---LLIKPRTG 178 S + + K + +IL GD + Sbjct: 128 HVSGTHEHIIVHLGTLLLK---------ISDSESIILQPGDFYAFSGDVKHAYICADDAV 178 Query: 179 DIVA 182 Sbjct: 179 SATV 182 >gi|228907545|ref|ZP_04071402.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] gi|228852037|gb|EEM96834.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] Length = 146 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 5/108 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ E + +A+K G+ + K + +P +++ + N T Sbjct: 3 IGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + +L+ + E++ G F + + Sbjct: 58 LDELIKGKQNIKEKIHIDEEDEDFEKENEFGFYIGFGLLILSAFVDYE 105 >gi|172061648|ref|YP_001809300.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994165|gb|ACB65084.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 227 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 6/172 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + KI AA + Sbjct: 35 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ ++ S P +++ + + + + Sbjct: 90 VAAFLRRHAVNGFEHLAAERAARVVSSSGRFSARALYPEGEPAAAEFHELRIAPLHTEPG 149 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + ++ L+ V D+ GD Sbjct: 150 TRRA-PGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGDT 200 >gi|110678190|ref|YP_681197.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] gi|109454306|gb|ABG30511.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] Length = 192 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + +++ ++ LA +G+ + + PS S+ KIL + Sbjct: 5 DVGARLKAIRQQNGMSQRQLAEASGVPHGQISMIETNKS-----SPSVASLRKILGGLSL 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 + + + + E+ L Sbjct: 60 GMSEFFEPDVVEDDKPFYTPSELRDL 85 >gi|83720248|ref|YP_441361.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83654073|gb|ABC38136.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 224 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 13/162 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ T LA AGL + +K +R PS K+ A + Q Sbjct: 43 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSV-----PSIAVALKLSKALQVDVEQ 97 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L T + + + S + V P R + + Sbjct: 98 LFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPP-RDYVSSAF 156 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + S+ + I++ GD + Sbjct: 157 REHEGEEMLFVHKGSVEIEFPNE-------TIKLKTGDSVYF 191 >gi|332158049|ref|YP_004423328.1| hypothetical protein PNA2_0406 [Pyrococcus sp. NA2] gi|331033512|gb|AEC51324.1| hypothetical protein PNA2_0406 [Pyrococcus sp. NA2] Length = 316 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/189 (8%), Positives = 49/189 (25%), Gaps = 14/189 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI------EGRNRWPSTESIFKILA 63 + + E H T + LAR G+ S + ++ R E + K + Sbjct: 128 GRKLKMLREEHGYTLAELARILGISRKSLQRYEKGESVVSVEVALRLEEIFDEPLVKPID 187 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + + + + + L + + + + + Sbjct: 188 VLKARLEDVSLTSEPESALEREVFDRLRKLGMSVVKIKNAPFNAITKEE--EDEIELLTG 245 Query: 124 RSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 ++ + + + + + + ++ + D L ++ Sbjct: 246 IDERKTGKTLRRAELVSQMVEVIGSEGIFVLK-KAKAGVIKSVPILPKDMLEEVRDVDEL 304 Query: 181 V--AKVLIS 187 + K L Sbjct: 305 LEIIKELKK 313 >gi|322372760|ref|ZP_08047296.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] gi|321277802|gb|EFX54871.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] Length = 113 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 7/113 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + LT +A K G+ + + + G R P +++ K+ N + Sbjct: 2 LKDNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGG-----RNPKDDTVEKLAEILNTS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + DG L + ++ + P Sbjct: 57 F--EILKGRDDGLEEIVSLLREHELTEEDKNQIISLLQDFLINNSMYDELPTP 107 >gi|322382840|ref|ZP_08056680.1| hypothetical protein PL1_3343 [Paenibacillus larvae subsp. larvae B-3650] gi|321153186|gb|EFX45636.1| hypothetical protein PL1_3343 [Paenibacillus larvae subsp. larvae B-3650] Length = 244 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 11/111 (9%) Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN- 166 + P + + D + +D SM DI+ L Sbjct: 130 IANEAIEEYIHYP--------FLSRKQPDFALRIKDNSMSKAGIEIDDIVFLRKTKWAEY 181 Query: 167 CGDRLLIKPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIA 216 G + + D + K + G I L+S N V ++I Sbjct: 182 NGQIVGVIINGQDGMLKRMKWTEGSPKIQLVSGNDSINPLEVFPNEIIMCG 232 >gi|268320250|ref|YP_003293906.1| hypothetical protein FI9785_1788 [Lactobacillus johnsonii FI9785] gi|262398625|emb|CAX67639.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 161 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I R+ + +NLT +A+K + + + + P E I I ++ Sbjct: 5 EQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRN-----LPDFEMIILIAKTFGVSLD 59 Query: 71 QLLDLPFSDGRTTEK 85 +L+ + + Sbjct: 60 ELILGDKKMNKIEQT 74 >gi|262200767|ref|YP_003271975.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084114|gb|ACY20082.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 182 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 5/108 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + +++ S LAR AG+ S ++ + R P+ ++++ + Sbjct: 16 IGARITELRTARSMSLSALARAAGIGKGSLSELESGQ-----RNPTIDTLYAVAGPLGVP 70 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + LL + + + P G+ G+ Sbjct: 71 LSALLGEESGTEGSGRSLSARLLHVEHHPDGAVTEVFWLTVTPGDVRE 118 >gi|319426969|gb|ADV55043.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 108 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++I ++ R + L+ ++G+ + +K + ++ R S ++ ++L Sbjct: 6 EQILGSLRDARIRKGFSQRELSARSGVPQSHISKIESGDVD--LRMSSLIALARVLD 60 >gi|160879054|ref|YP_001558022.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427720|gb|ABX41283.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 179 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I + + +LT LA +A L ++ +R PS ++ IL Sbjct: 2 KIGAKIKELRVQKSLTQEELADRAELSKGFISQLERDIT-----SPSIATLVDILQCLGT 56 Query: 68 T 68 Sbjct: 57 N 57 >gi|46402134|ref|YP_006628.1| Gp48 [Klebsiella phage phiKO2] gi|40218278|gb|AAR83064.1| Gp48 [Klebsiella phage phiKO2] Length = 95 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + M E+ L+ S LA + G+ P++ ++ + G S +++ K A + Sbjct: 34 LVEMLYEMREKAGLSKSALAERMGITPSAISRLE-----GNPLGASMKTLNKYAQACGAS 88 >gi|310657705|ref|YP_003935426.1| DNA-binding protein [Clostridium sticklandii DSM 519] gi|308824483|emb|CBH20521.1| DNA-binding protein [Clostridium sticklandii] Length = 183 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 49/158 (31%), Gaps = 10/158 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S +I + I + + T LA K L + ++ + + S+ K Sbjct: 1 MEILS--EIADKIKELRKEKGYTLKDLADKTELSVSFLSQVENGSS-----SLAITSLKK 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ A + + + + E++ + PS F + + + Sbjct: 54 LVDAFSVPMTYFFYSMETHNYHVKIDEQKSFKMEGLPSEFVRLSGD--FSGRSLESMIVT 111 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 H Y ++ + + ++ + L+ Sbjct: 112 IPGGQKHGHKYNHPGEEFAYVLEGVLIV-EIEDKEYLV 148 >gi|257867307|ref|ZP_05646960.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257873640|ref|ZP_05653293.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257801363|gb|EEV30293.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257807804|gb|EEV36626.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 91 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 A+ + E LT LA A + ++ + +R S E++ K+ +A +T Sbjct: 35 ALMKARESAGLTQRELAELAAVPQSTIARIERGDNT------SFETLSKLASALGKT 85 >gi|257067141|ref|YP_003153397.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256799021|gb|ACV29676.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 81 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 4/43 (9%), Positives = 15/43 (34%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 ++ + + + + + L K G+ + + +R Sbjct: 14 RLVNNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSI 56 >gi|227892048|ref|ZP_04009853.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227866158|gb|EEJ73579.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 183 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 2/105 (1%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E +T + LAR++G+ S + E + + + L + + Sbjct: 6 KRLKEAIENMGITQAELARRSGISRASITDYLKGKYEAK--QDKIYPLARALNVSEAWLM 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 D + + L T Sbjct: 64 GYSDDASNSVDKSFTFTLTFNLPADLTDELHRLSGELGVSTSALI 108 >gi|227113894|ref|ZP_03827550.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 188 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/144 (8%), Positives = 38/144 (26%), Gaps = 5/144 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ ++I + + + + + A + G+ + +R P+ +++K Sbjct: 1 MSDELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGES-----SPTVATLWK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I N ++ +D T + + + Sbjct: 56 IATGMNVAFSTFIEPTLADEDVTYRSGAGSSFKENEAGMHVVPLFPFDEKLRFDMLVIEL 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 S + + + + Sbjct: 116 EAGASSTSSAHESGVIEHIIVLEG 139 >gi|282600408|ref|ZP_05974197.2| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] gi|282565257|gb|EFB70792.1| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] Length = 185 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 3/147 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M++ + KI + I + + NL+ + L++ +G+ + +K + R + ESI Sbjct: 1 MSNKINIKIGQKIRLLRQARNLSLNELSQLSGISKAALSKLESGDSN--PRIDTLESIAA 58 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L + + + +E + + G + + Sbjct: 59 ALRFPLSDLFTRQNESYPYFVKAIPQEGDYLEQFKFRISMGNVSEIWQLSMKRGAI-INS 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM 147 P S + + + + + Sbjct: 118 PAHMSGTHEHIMLHSGSLMLRFNNEQN 144 >gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 237 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + ++ H LT L +K + S + + R P E++ KI Sbjct: 6 RLKKLRLEHKLTQEQLGKKINVTKVSISGYENGT-----RTPDIETLQKIAEVF 54 >gi|326384044|ref|ZP_08205727.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197204|gb|EGD54395.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 156 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I E I ++ LA +AG+ ++ +R R PS + + +I Sbjct: 25 QDIGEFIRSQRLSAKVSLRQLAERAGVSNPYLSQIERG-----LRKPSADVLSQIAKGLR 79 Query: 67 ETICQLLDLPFSDGRTTEKKEK 88 + L + Sbjct: 80 VSAEVLYVRAGILEARPASPVR 101 >gi|313896884|ref|ZP_07830431.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974331|gb|EFR39799.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 96 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I EA+ LT LA K+G+ + +K + PS ++ ++ A Sbjct: 33 IIEAMIDARAAAGLTQKELAEKSGIAQSDISKLENGNAN-----PSLRTLQRLAAGMGMR 87 Query: 69 IC 70 + Sbjct: 88 LH 89 >gi|313110592|ref|ZP_07796475.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882977|gb|EFQ41571.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 193 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/117 (10%), Positives = 38/117 (32%), Gaps = 5/117 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + + LT + LA + + ++ +R P+ + ++ + Sbjct: 15 ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLASGLG 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + +LL + ++ ++ + +G + V +P Sbjct: 70 IALSELLGDTQAPAEPLCRRAQQEVWEDPASGYRRRQVGARDPRSGCEMVEVEIPAN 126 >gi|310778575|ref|YP_003966908.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309747898|gb|ADO82560.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 190 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 42/144 (29%), Gaps = 7/144 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + I + + + ++ NL+ +R G+ + +R P+ +++K Sbjct: 1 MKELS-EVIGKNLKEIRKKQNLSLDETSRLTGVSKPMLGQIERGQSN-----PTVSTLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + + +D K + L F + + + Sbjct: 55 IATGLKVPFSEFMKKSTADYEIVSLKNIDPVLECGEDMKIYTMF-PFNNEENFEILYIKL 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 + + + ++ Sbjct: 114 ESGAVHKSQKHRDEVKEYVFVIDG 137 >gi|326203161|ref|ZP_08193027.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] gi|325986807|gb|EGD47637.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] Length = 70 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 5/74 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + T + LA G+ + +++ PS E FKI N Sbjct: 2 IQNRIKVLRAERDWTQADLAEMVGISRQAIISIEKYKYT-----PSLELAFKIAEVFNVL 56 Query: 69 ICQLLDLPFSDGRT 82 I ++ + Sbjct: 57 ITEVFEHKEDMNND 70 >gi|229150060|ref|ZP_04278283.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] gi|228633359|gb|EEK89965.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] Length = 149 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + ++ E + +A+K G+ + K + +P +++ + N Sbjct: 2 NLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T+ +L+ + ++ Sbjct: 57 TLDELIKGNQDFKKKIHSDAEDEDFE 82 >gi|255652581|ref|ZP_05399483.1| hypothetical protein CdifQCD_20531 [Clostridium difficile QCD-37x79] Length = 149 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 5/85 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + L LA + ++ + R P ESI K+ N T Sbjct: 3 GERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQ-----RTPPAESIVKLAEYFNVTT 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLY 94 LL ++ + ++ Sbjct: 58 DYLLGHTKTNYLVSANIPGMPSIIC 82 >gi|225028236|ref|ZP_03717428.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] gi|224954415|gb|EEG35624.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] Length = 490 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 17/169 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S K+ + I + LT + LA G++ ++ + PS + + Sbjct: 1 MKKLSITKMADTIIAKRKEQKLTQAQLAEMTGINRGMISRLESCDYT-----PSIDQLQS 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I N + L +++ + + +G G + + N V + Sbjct: 56 IAEVLNFEVVDLF--EDDKVTSSKPVLDKKYNIAVAGTGYVGLSIATLLSQHNHVTAVDI 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKT----------QDTSMLPLYRKGDILIL 159 + QD + Y+ D +++ Sbjct: 114 IPEKVDLINNRKSPIQDDYIEMYLAEKELDLTATLDGEEAYKNADFVVI 162 >gi|326803119|ref|YP_004320937.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650926|gb|AEA01109.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 115 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 5/74 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++ ++ LA K + + + + R TE + + N +I Sbjct: 7 RLAQLRNEKKMSQRELAEKMDVSQSYVGQWESG-----KRVIPTEKLLDLANFFNVSIDY 61 Query: 72 LLDLPFSDGRTTEK 85 LL + ++ Sbjct: 62 LLGYTNNKTPRSKD 75 >gi|311896864|dbj|BAJ29272.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 128 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + E I + LA AG+ ++ +R R PS E + + Sbjct: 1 MASLNVGSLGEYIREQRRSAQYSLRQLAEVAGVSNPYLSQIERG-----LRKPSAEILQQ 55 Query: 61 ILAATNET 68 I A + Sbjct: 56 IAKALRIS 63 >gi|296272112|ref|YP_003654743.1| XRE family transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096287|gb|ADG92237.1| transcriptional regulator, XRE family [Arcobacter nitrofigilis DSM 7299] Length = 197 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 5/94 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I + + + LA+ AG+ + + +G S E++ K+ Sbjct: 1 MTEEFNVGKKIKFLRKEKKMNAKELAKDAGISYGMLSLLESGSTQG-----SVETLRKVA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 TI L T K + Y Sbjct: 56 KVLGVTIAHLFTNSEDSDLATSPKNLDNENSYVV 89 >gi|253689846|ref|YP_003019036.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756424|gb|ACT14500.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 200 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 8/113 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ AI R ER NL+ + LA++AGL ++ ++ + PS E+++ + A + Sbjct: 25 RLAVAIRRERERLNLSVTELAKRAGLAKSTLSQLETGIGN-----PSLETLWALAMALDV 79 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + QL+ + E + + + P G + + + Sbjct: 80 QVSQLIGQSRQHVQVIRANEG---VATYSEQANYAATLLAACPAGAQRDIYRL 129 >gi|242372638|ref|ZP_04818212.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349693|gb|EES41294.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 67 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R + LA+KAG+ + + +R PS + KI N Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAIKIAKIFN 53 >gi|271962500|ref|YP_003336696.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505675|gb|ACZ83953.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 175 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 5/86 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I E I ++ LA AG+ ++ +R R PS E + + Sbjct: 1 MALPKVGSIGEYIREQRTHAKISLRQLAAAAGVSNPYLSQIERG-----LRKPSAEILNQ 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86 I + + L Sbjct: 56 IAKGLHISSQALYVQAGLIEEREPDS 81 >gi|183980814|ref|YP_001849105.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174140|gb|ACC39250.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 474 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 8/103 (7%), Positives = 27/103 (26%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + ++ L + P+ Sbjct: 61 ATFFSSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSAHPS 103 >gi|167561623|ref|ZP_02354539.1| DNA-binding protein [Burkholderia oklahomensis EO147] gi|167568859|ref|ZP_02361733.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 216 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 6/172 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 30 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 84 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ + ++ S P +++ + + + + Sbjct: 85 VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEPG 144 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + ++ L+ V D+ GD Sbjct: 145 APRA-PGTSVNLVVSEGTLEVGIHDRRQLLATGDAIVFDADQPYTLRNPGDT 195 >gi|82750060|ref|YP_415801.1| DNA-binding protein [Staphylococcus aureus RF122] gi|282915671|ref|ZP_06323442.1| transcriptional regulator [Staphylococcus aureus subsp. aureus D139] gi|283768078|ref|ZP_06340993.1| DNA-binding protein [Staphylococcus aureus subsp. aureus H19] gi|82655591|emb|CAI79987.1| probable DNA-binding protein [Staphylococcus aureus RF122] gi|282320487|gb|EFB50826.1| transcriptional regulator [Staphylococcus aureus subsp. aureus D139] gi|283461957|gb|EFC09041.1| DNA-binding protein [Staphylococcus aureus subsp. aureus H19] Length = 67 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R L + LA++AG+ + + +R PS + KI N Sbjct: 3 NRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNF-----MPSVLTAIKIARIFN 53 >gi|325680681|ref|ZP_08160219.1| signal peptidase I [Ruminococcus albus 8] gi|324107461|gb|EGC01739.1| signal peptidase I [Ruminococcus albus 8] Length = 195 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 7/73 (9%) Query: 140 HKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMS 197 + SM D LI+ + + GD ++ + G+++ K +I+ G+ + + Sbjct: 44 VRVDGVSMEDTLFDNDRLIIRTLFYKPARGDVVVCRSDMLGELIIKRVIALGGQRVTI-- 101 Query: 198 LNCCYPVDTVEMS 210 Y V + Sbjct: 102 ---DYEEGVVTVD 111 >gi|282165400|ref|YP_003357785.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] gi|282157714|dbj|BAI62802.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] Length = 63 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 5/66 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R N+T LA K G+ + N + + PS FK+ I Sbjct: 3 NRLKELRARFNMTQEDLAVKVGVSRQTINAIETGKYD-----PSLPLAFKLARCFETNIE 57 Query: 71 QLLDLP 76 L Sbjct: 58 HLFMEE 63 >gi|256961381|ref|ZP_05565552.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293383669|ref|ZP_06629578.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] gi|293387218|ref|ZP_06631776.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis S613] gi|312906217|ref|ZP_07765229.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312909563|ref|ZP_07768418.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951877|gb|EEU68509.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291079005|gb|EFE16369.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] gi|291083356|gb|EFE20319.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis S613] gi|310627863|gb|EFQ11146.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311290236|gb|EFQ68792.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 174 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 5/102 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K I I + + N+T LA + G+ P++ + PS I +I Sbjct: 7 NKIIATNIKKYLKESNITQKKLAEEIGISPSTMSDYMNLRSN-----PSHGVIQRIADYF 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + + + + L Sbjct: 62 KIKKSDIDTTYKENSDPSSLESIYNILEPERQKIVYETAKEQ 103 >gi|255609178|ref|XP_002539013.1| conserved hypothetical protein [Ricinus communis] gi|223509258|gb|EEF23370.1| conserved hypothetical protein [Ricinus communis] Length = 110 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 6/93 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +H + E + + ++ T LA +GL + + + + PS E + + Sbjct: 3 KMATH--LGEKLYELRKQRGFTLDKLAELSGLSKSYIWELENKESQ----RPSAEKLTAL 56 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 + ++ E Sbjct: 57 ADVLGVSTAFFMEEDIRQPEERHLDEAFFRNYQ 89 >gi|254513703|ref|ZP_05125766.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221531933|gb|EEE34990.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 209 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 46/170 (27%), Gaps = 22/170 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ N+T + LA+ GL +K + PS ++ + A + Sbjct: 25 IGREVRAFRKQQNITVAELAQLTGLSIGMLSKIENGNT-----SPSLTTLQSLADALSVP 79 Query: 69 ICQLLDLPFSDGRTTEKKE--------------KEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + K + LL + G T Sbjct: 80 LTSFFRQFEERREAVHTKAGEGVELEREGTRANHQYNLLGHIGANGSGVIVEPYLITLTA 139 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 + V IY ++ + + P + GD L ++ Sbjct: 140 ESDVFPTFQHGGIETIYMLEGE--VDYRHGDQIYP-LKPGDTLFFDADAP 186 >gi|154500025|ref|ZP_02038063.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] gi|150271623|gb|EDM98880.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] Length = 171 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R+ + + L+ LA K + + +K + I P +++ KI + ++ Sbjct: 5 EKLQRLRKVNGLSQEQLAEKLNVSRQAISKWEMGAI------PDMDNVIKISRFFDCSLD 58 Query: 71 QLLDLP 76 L++ Sbjct: 59 YLMNNE 64 >gi|145220714|ref|YP_001131392.1| hypothetical protein Mflv_0109 [Mycobacterium gilvum PYR-GCK] gi|315442334|ref|YP_004075213.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|145213200|gb|ABP42604.1| protein of unknown function DUF955 [Mycobacterium gilvum PYR-GCK] gi|315260637|gb|ADT97378.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1] Length = 482 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 8/103 (7%), Positives = 27/103 (26%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGARVRQLRSERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + ++ L + P+ Sbjct: 61 ATFFASQDDTRLIAELREVTMDRDLDVEVDPAEIAEVVASHPS 103 >gi|853809|emb|CAA60798.1| unnamed protein product [Clostridium perfringens] Length = 265 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 K+ E + M +R L+ LA K G+ + +K + Sbjct: 2 KLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVP 42 >gi|83720918|ref|YP_441151.1| DNA-binding protein [Burkholderia thailandensis E264] gi|167579903|ref|ZP_02372777.1| DNA-binding protein [Burkholderia thailandensis TXDOH] gi|167617976|ref|ZP_02386607.1| DNA-binding protein [Burkholderia thailandensis Bt4] gi|257140187|ref|ZP_05588449.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83654743|gb|ABC38806.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 219 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 6/172 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 33 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 87 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ + ++ S P +++ + + + + Sbjct: 88 VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEPG 147 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + ++ L+ V D+ GD Sbjct: 148 APRA-PGTSVNLVVSEGTLEVSIHDRRQLLATGDAIVFDADQPYTLRNPGDT 198 >gi|54296994|ref|YP_123363.1| hypothetical protein lpp1035 [Legionella pneumophila str. Paris] gi|54297982|ref|YP_124351.1| hypothetical protein lpp2037 [Legionella pneumophila str. Paris] gi|54298253|ref|YP_124622.1| hypothetical protein lpp2311 [Legionella pneumophila str. Paris] gi|54298343|ref|YP_124712.1| hypothetical protein lpp2402 [Legionella pneumophila str. Paris] gi|53750779|emb|CAH12186.1| hypothetical protein lpp1035 [Legionella pneumophila str. Paris] gi|53751767|emb|CAH13189.1| hypothetical protein lpp2037 [Legionella pneumophila str. Paris] gi|53752038|emb|CAH13464.1| hypothetical protein lpp2311 [Legionella pneumophila str. Paris] gi|53752128|emb|CAH13555.1| hypothetical protein lpp2402 [Legionella pneumophila str. Paris] Length = 391 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/185 (10%), Positives = 56/185 (30%), Gaps = 7/185 (3%) Query: 11 EAIDRMAER------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 A + + ++ ++ LAR L ++ + +G E R + +T S ++L Sbjct: 94 RASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGL 153 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + + + K + G+ ++ + + + Sbjct: 154 DEHSFNRKVGYATTFCDLAKHKI-FDVVEGRSEKDLEGYLNTLEGKDKVQVVCIDLSSSY 212 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y + +L + ++ ++ G ++ ++ K Sbjct: 213 RKLIRRYFPNAMIVADRFHVIRLLNQFCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKR 272 Query: 185 LISRR 189 L R Sbjct: 273 LNRRE 277 >gi|18309709|ref|NP_561643.1| hypothetical protein CPE0727 [Clostridium perfringens str. 13] gi|18144386|dbj|BAB80433.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 268 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 K+ E + M +R L+ LA K G+ + +K + Sbjct: 2 KLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVP 42 >gi|320156088|ref|YP_004188467.1| hypothetical protein VVM_02450 [Vibrio vulnificus MO6-24/O] gi|319931400|gb|ADV86264.1| hypothetical protein VVMO6_01242 [Vibrio vulnificus MO6-24/O] Length = 269 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/114 (11%), Positives = 30/114 (26%), Gaps = 8/114 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--------RNRW 52 M + + + A+ + + LT L+ + G+ ++F + R Sbjct: 1 MQDTTPEYLLAALRQAIKSKGLTYRELSDRLGIPLSTFKRHLYSSNISLDKLLEYCRETD 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 S E + K+ + + + GF Sbjct: 61 TSLEELQKLAVQLQTNDENYFSHTQDEVFFNFPELYDFYREIRHLRDKDGFRWM 114 >gi|296134047|ref|YP_003641294.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296032625|gb|ADG83393.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 255 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I + E L+ GL T ++ +R P+ ++ KI A Sbjct: 71 NIGDRIRALREEKGLSLVDFGNLTGLSFTYLSELERGTTV-----PAVGTLKKIAACLG 124 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I E + + LT LA +AG+ P + + + S ++I KI Sbjct: 135 RKNSIIAEKLQYARKMKGLTQKELAVRAGISPGLVGQIEMGKVNA-----SLKTIEKISQ 189 Query: 64 ATNETICQLLDLPF 77 ++C L+ Sbjct: 190 VLGVSVCYLILDRE 203 >gi|229191966|ref|ZP_04318936.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] gi|228591517|gb|EEK49366.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] Length = 144 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ L+ LA + G ++ R P +++ KI + Sbjct: 2 LGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQ-----REPDYDTLKKIADFFEVS 56 >gi|315231266|ref|YP_004071702.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] gi|315184294|gb|ADT84479.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] Length = 65 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E LT LA+ G+ + ++ + PS FKI I Sbjct: 3 NRLRELREARGLTQEELAKILGVTRQTIIAIEKGKYD-----PSLRLAFKIARFFGVKIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DIFIYEG 64 >gi|119026382|ref|YP_910227.1| putative transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765966|dbj|BAF40145.1| putative transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 164 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 18/42 (42%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 ++ E + M + +T LA + G+ + ++ + + Sbjct: 20 EDQLLEGLVSMRVQRGMTQEQLADEMGVSQSYISQIENGRKK 61 >gi|27365681|ref|NP_761209.1| hypothetical protein VV1_2362 [Vibrio vulnificus CMCP6] gi|27361829|gb|AAO10736.1| hypothetical protein VV1_2362 [Vibrio vulnificus CMCP6] Length = 269 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/114 (11%), Positives = 30/114 (26%), Gaps = 8/114 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--------RNRW 52 M + + + A+ + + LT L+ + G+ ++F + R Sbjct: 1 MQDTTPEYLLAALRQAIKSKGLTYRELSDRLGIPLSTFKRHLYSSNISLDKLLEYCRETD 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 S E + K+ + + + GF Sbjct: 61 TSLEELQKLAVQLQTNDENYFSHTQDEVFFNFPELYDFYREIRHLRDKDGFRWM 114 >gi|37680165|ref|NP_934774.1| hypothetical protein VV1981 [Vibrio vulnificus YJ016] gi|37198911|dbj|BAC94745.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 268 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/114 (11%), Positives = 30/114 (26%), Gaps = 8/114 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--------RNRW 52 M + + + A+ + + LT L+ + G+ ++F + R Sbjct: 1 MQDTTPEYLLAALRQAIKSKGLTYRELSDRLGIPLSTFKRHLYSSNISLDKLLEYCRETD 60 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 S E + K+ + + + GF Sbjct: 61 TSLEELQKLAVQLQTNDENYFSHTQDEVFFNFPELYDFYREIRHLRDKDGFRWM 114 >gi|134299094|ref|YP_001112590.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051794|gb|ABO49765.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 69 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++I ++ ++ T S LA++ GL ++ R P+ +++ I Sbjct: 3 VGKSIAKLRKQKKWTQSKLAKETGLSRGYIASIEQG-----RRHPALKTLTIIAEKLGVE 57 Query: 69 ICQLLDLPFS 78 + +L+ Sbjct: 58 MRELIRGGDH 67 >gi|331086629|ref|ZP_08335706.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409795|gb|EGG89230.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 193 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + +H +T LA K + + +K + +G E + K L Sbjct: 6 GNTIRTLRIKHGITQKELAEKLNVSDKTISKWE--TEKGLPDISIVEELAKALH 57 >gi|270284600|ref|ZP_05966400.2| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium gallicum DSM 20093] gi|270276519|gb|EFA22373.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium gallicum DSM 20093] Length = 70 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E +L+ LA+++G+ + N+ +R I P ++ K+ A +T Sbjct: 17 AREEAHLSQEELAKRSGVSRATVNRIERGRI-----MPLLNTLEKLAKAMGKT 64 >gi|260430057|ref|ZP_05784032.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260418980|gb|EEX12235.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 184 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 3/139 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++++ I + + LT LA G + +R E R E I + T Sbjct: 2 NRQVGTDIRALRKSRGLTLQALAEATGRSAGWLSLIERGQAEPSIRD--LEKIAALFGLT 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + ++E +P+ + +V P Sbjct: 60 ISFFFRSAGRAEREQGLVLRQEDRMPIGSDESGLVEELLSPSLDGAFEMIRSVFAPGASR 119 Query: 126 PHNGIYAIQTQDTRHKTQD 144 A + Sbjct: 120 DEMRPRAGREDG-AVLVSG 137 >gi|256374687|ref|YP_003098347.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918990|gb|ACU34501.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 86 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S + I I + L+ + LA ++P + +R + +PS + +I Sbjct: 8 SEQPIHNRIGVLRAERGLSRADLAEAVEVNPQTIGALERG-----DHYPSLDLALRICEV 62 Query: 65 TN 66 Sbjct: 63 FG 64 >gi|171321294|ref|ZP_02910256.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171093421|gb|EDT38604.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 227 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 6/171 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + KI AA + Sbjct: 35 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ ++ S P +++ + + + + Sbjct: 90 VAAFLRRHAVNGFEHLAAERAARVVSSSGRFSARALYPEGEPAAAEFHELRIAPLHTEPG 149 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 A + ++ L+ V D+ GD Sbjct: 150 TRRA-PGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199 >gi|158339289|ref|YP_001520466.1| helix-turn-helix domain-containing protein [Acaryochloris marina MBIC11017] gi|158309530|gb|ABW31147.1| helix-turn-helix domain protein [Acaryochloris marina MBIC11017] Length = 96 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + LT + +A K G T+ + + G+ PS ++ K A Sbjct: 35 AARQNAGLTQADIAEKMGTKATAVTRLESSLSSGK-HSPSLSTLRKYAKAVGC 86 >gi|167648317|ref|YP_001685980.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350747|gb|ABZ73482.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 69 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+ LT + LA G+ + N + PST K+ A + Sbjct: 6 LLNALKAARTEAGLTQADLAELVGVTRKTINTVENGVFV-----PSTVLSLKLARALGTS 60 Query: 69 ICQLLDLPF 77 + L LP Sbjct: 61 VEALFQLPE 69 >gi|324996159|gb|EGC28069.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK678] gi|327458575|gb|EGF04925.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1] gi|327471774|gb|EGF17215.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK408] gi|327490411|gb|EGF22195.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 74 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESKGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|319792387|ref|YP_004154027.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315594850|gb|ADU35916.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 236 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 19/43 (44%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 + + +R T + LA ++G+ T+ ++++R Sbjct: 18 PTLDRTTFGHRLRTARKRFGWTLAQLAERSGVSITTISRAERG 60 >gi|304443271|ref|YP_003857101.1| transcription regulator [Staphylococcus phage SAP-26] gi|302749879|gb|ADL66964.1| transcription regulator [Staphylococcus phage SAP-26] Length = 84 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 18/40 (45%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 +D +R T S A K G+ P+++N + + R Sbjct: 10 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRD 49 >gi|262044546|ref|ZP_06017602.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038090|gb|EEW39305.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 193 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 8/138 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I I E + + LA AG +K +R P+ + ++ A Sbjct: 9 NQRISARIRIERESRGWSLNDLAELAGASRAMIHKIERGES-----SPTASMLGRLSGAF 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ L+ + P+ P S S + +P Sbjct: 64 GISMSTLIARAEMQEGKLLR-FASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPGSD 122 Query: 126 PHNGI--YAIQTQDTRHK 141 YA+ Q + Sbjct: 123 VPMPAASYALARQLIWLQ 140 >gi|240948598|ref|ZP_04752971.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240297106|gb|EER47677.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 114 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 1 MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M+ + + I AI + + LT + LA G+ + ++ +R PS Sbjct: 1 MSDKTEQLVQSIGRAISKYRQAVGLTQAQLAEILGISNDAVSRMERGKSV-----PSVLR 55 Query: 58 IFKILAATNETICQ 71 + ++ + Sbjct: 56 LLELSEIFGCEVAD 69 >gi|229084781|ref|ZP_04217041.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] gi|228698528|gb|EEL51253.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] Length = 181 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I++ + L+ LA A + P+ ++ +R + + K L Sbjct: 5 DIGKKIEKQRKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|159036046|ref|YP_001535299.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914881|gb|ABV96308.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + ++ L+ +AG+ ++ +R R PS E + ++ +A Sbjct: 9 NIGGFIRDLRRNAKISLRQLSEQAGVSNPYLSQIERG-----LRKPSAEVLQQLASALRV 63 Query: 68 TICQLL 73 + + Sbjct: 64 STPAMY 69 >gi|118619629|ref|YP_907961.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571739|gb|ABL06490.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 474 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 8/103 (7%), Positives = 27/103 (26%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + ++ L + P+ Sbjct: 61 ATFFSSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSAHPS 103 >gi|54296056|ref|YP_122425.1| hypothetical protein lpp0074 [Legionella pneumophila str. Paris] gi|148358226|ref|YP_001249433.1| hypothetical protein LPC_0087 [Legionella pneumophila str. Corby] gi|296105580|ref|YP_003617280.1| hypothetical protein lpa_00110 [Legionella pneumophila 2300/99 Alcoy] gi|53749841|emb|CAH11222.1| hypothetical protein lpp0074 [Legionella pneumophila str. Paris] gi|148279999|gb|ABQ54087.1| hypothetical protein LPC_0087 [Legionella pneumophila str. Corby] gi|295647481|gb|ADG23328.1| hypothetical protein lpa_00110 [Legionella pneumophila 2300/99 Alcoy] Length = 94 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +A+ M ++ LT LA + G + ++ ++ PS ++ K A Sbjct: 30 LIDALLTMRQKAGLTQEELAERMGTKKGNISRLEKGNTN-----PSWNTLEKYAHACGFD 84 >gi|27377331|ref|NP_768860.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum USDA 110] gi|27350474|dbj|BAC47485.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum USDA 110] Length = 182 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R L+ LA++AG+ ++ + + + PS ++ +IL Sbjct: 4 DIGGRLRFIRARQKLSQRELAKRAGVTNSTISLIESNQMN-----PSVGALKRILDGIPM 58 Query: 68 TICQLL 73 + + Sbjct: 59 GLAEFF 64 >gi|325848985|ref|ZP_08170495.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480629|gb|EGC83691.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 67 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + L+ LA+ GL S + I PS E+ +KI ++ Sbjct: 4 EINNKIREFRKEKGLSQHKLAKMVGLKRRSIMAYENNTI-----SPSLETAYKICKVLDK 58 Query: 68 TICQLLDLP 76 I ++ Sbjct: 59 DIKEVFIFK 67 >gi|325068074|ref|ZP_08126747.1| Cro/CI family transcriptional regulator putative [Actinomyces oris K20] Length = 146 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 2/138 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + ++H T LA K G+ + K + G S + + + Sbjct: 2 ISSNIAALRKKHRWTQEALANKVGVSRQTIAKWE--APGGNPDISSCIRLAQAFDVAIDD 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + S K ++ + VF + + + +I Sbjct: 60 LVNGDTSFVSMLDRPGKYIFGTVVIDQDGRLTLPVRARKVFNIKSGDELLLIGDIDQGLA 119 Query: 129 GIYAIQTQDTRHKTQDTS 146 + A + Sbjct: 120 LMDAQFFVQAARHVEGDH 137 >gi|307710469|ref|ZP_07646906.1| putative transcriptional regulator [Streptococcus mitis SK564] gi|307618732|gb|EFN97871.1| putative transcriptional regulator [Streptococcus mitis SK564] Length = 113 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + ++ LT +A K G+ ++ +R + P+ E++ KI N + Sbjct: 5 ERLKTLRKQAQLTQVDVAEKLGISQPAYASWERGIKK-----PTQENLVKIAQILNVS 57 >gi|303326710|ref|ZP_07357152.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302862698|gb|EFL85630.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 89 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + R + L+ LA + G+ + + + R P+ + KI + Sbjct: 22 AVLRRYRDAAGLSQRQLADRVGITKSYVSSLELGY-----RAPNLNLLIKIARSLEVRPG 76 Query: 71 Q 71 + Sbjct: 77 E 77 >gi|296103507|ref|YP_003613653.1| putative transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057966|gb|ADF62704.1| putative transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 99 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 9/59 (15%) Query: 5 SHKKIWE---------AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 S ++I A++++ E N++ + LA G+ + K ++ G + R Sbjct: 15 SQERIAAKVEVMRRIVALNQLREELNISQTELAAAMGVKQPTVAKIEQPGNDPRLSTLK 73 >gi|291550212|emb|CBL26474.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 116 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + I + + ++ A++ G+ +S + K+ + P ++ I I + Sbjct: 2 KTISDKIFELLKEKGMSQKEFAQRTGIAESSISDWKK-----KRTNPVSDKILIICEVLD 56 Query: 67 ETICQLLDLPFS 78 T +LL Sbjct: 57 VTPYELLSGAEH 68 >gi|167916740|ref|ZP_02503831.1| gp48 [Burkholderia pseudomallei 112] Length = 105 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI LT + +A + G ++ ++ + + PS ++ K AA Sbjct: 42 LRAILSARREAGLTQAQIAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97 >gi|167620938|ref|ZP_02389569.1| gp48 [Burkholderia thailandensis Bt4] Length = 105 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI LT + +A + G ++ ++ + + PS ++ K AA Sbjct: 42 LRAILSARREAGLTQAQIAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97 >gi|167567537|ref|ZP_02360453.1| gp48 [Burkholderia oklahomensis EO147] Length = 105 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI LT + +A + G ++ ++ + + PS ++ K AA Sbjct: 42 LRAILSARREAGLTQAQIAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97 >gi|149203921|ref|ZP_01880889.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149142363|gb|EDM30408.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 207 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + T A++AGL ++ +K + + P+ +++ K+ Sbjct: 26 DLGARVRSLRKARGWTLEQAAKQAGLARSTLSKIENGQM-----SPTYDALKKLAQGLEI 80 Query: 68 TICQLLDLPFS 78 ++ QL P Sbjct: 81 SVPQLFTPPSR 91 >gi|42783659|ref|NP_980906.1| helix-turn-helix domain-containing protein [Bacillus cereus ATCC 10987] gi|218905704|ref|YP_002453538.1| helix-turn-helix domain protein [Bacillus cereus AH820] gi|42739588|gb|AAS43514.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10987] gi|218535752|gb|ACK88150.1| helix-turn-helix domain protein [Bacillus cereus AH820] Length = 113 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/114 (7%), Positives = 32/114 (28%), Gaps = 6/114 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H + + I + + ++T + A K + P + + + + + + K+ Sbjct: 1 MLQH--LGQTIRTLRKHKHITLNEFAAKLNVSPGYLSNLE----TAKTDTITLDLLQKLQ 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 N + + ++ +L + + + Sbjct: 55 EELNLFPALTQETDSQHHELHFRLQRLCQVLQQVHDTAPELANFFIAHVEKGLE 108 >gi|21242245|ref|NP_641827.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107669|gb|AAM36363.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 109 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + +R LT + L ++A L T+ + + +R PS +++ ++ + Sbjct: 7 ARLREARDRRGLTQAELGKEASLPSTTISHFESG-----SRKPSFDNLRRLTKVLGVSTD 61 Query: 71 QLL 73 L+ Sbjct: 62 YLM 64 >gi|306821372|ref|ZP_07454980.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550590|gb|EFM38573.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 135 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 7/108 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + E NLT S LA+ G+ + + + + R R E K+ + I Sbjct: 4 GKKLKALREDKNLTQSELAKILGITLKTVSNYE--TKDMRPR--KMEMYEKMANFFDVNI 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 LL + + + + +G+F G+ + Sbjct: 60 NYLLTEEDYFIMQAGEDFGYKGV---QDAKTIAQSMAGLFAGGDLPDE 104 >gi|145592882|ref|YP_001157179.1| XRE family transcriptional regulator [Salinispora tropica CNB-440] gi|145302219|gb|ABP52801.1| transcriptional regulator, XRE family [Salinispora tropica CNB-440] Length = 191 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + ++ L+ +AG+ ++ +R R PS E + ++ +A Sbjct: 9 NIGGFIRDLRRSAKISLRQLSEQAGVSNPYLSQIERG-----LRKPSAEVLQQLASALRV 63 Query: 68 TICQLL 73 + + Sbjct: 64 STPAMY 69 >gi|291537327|emb|CBL10439.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 138 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + I + + +LT + + K G+ + + +R R P+ ++ ++ Sbjct: 3 LDIQSIGKRIKKRRKELHLTQTEIKEKTGISSGNMSDIERGN-----RLPAATTLAQLSE 57 Query: 64 ATNETICQ 71 + +I Sbjct: 58 ILDCSIDW 65 >gi|238023508|ref|YP_002907740.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237878173|gb|ACR30505.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 201 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 42/151 (27%), Gaps = 17/151 (11%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 20 TPPRVGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 74 Query: 65 TNETICQLLDL------------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 ++ +L + ++ + + P G Sbjct: 75 LGISLDELFAPPKSPETIRVDGLHDIPTLAGHDGQYQLRVWGPIELAGRFEWYELTLPAG 134 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 + H + A + Sbjct: 135 GALVSNAHEPGTREHLTVLAGAVEIEAGAVS 165 >gi|284031797|ref|YP_003381728.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811090|gb|ADB32929.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 198 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 10/136 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + +R +T LA + G+ ++ ++ + R P+ E + + T Sbjct: 12 VGARLKHLRQRRTITLVELADQTGISISTLSRLEAG-----LRRPTLEQLLPLARVHGVT 66 Query: 69 ICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + +L+D P + + + +L G V PTGN + Sbjct: 67 LDELVDAPPTGNPRVTLRPIRADDGAVILPLTRRPGGIQAYKFVLPTGN-DDAEPQLRTH 125 Query: 125 SPHNGIYAIQTQDTRH 140 ++ Y + Sbjct: 126 EGYDWAYVLNGTLRLV 141 >gi|226306979|ref|YP_002766939.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226186096|dbj|BAH34200.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 190 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + A+ R R L+ S +AR+A + ++ ++ + PS E+++ + A Sbjct: 13 QKLVAVALKRERARAGLSLSEVARRADIAKSTLSQLESGLGN-----PSLETLWALGNAL 67 Query: 66 NETICQ 71 Q Sbjct: 68 GVPFSQ 73 >gi|255658714|ref|ZP_05404123.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849104|gb|EEX69111.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 189 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ LT +++ G+ ++ + R P+ ++ K+ + + Sbjct: 5 DRLRALRKKSGLTQDEFSKQTGIGRSAVGMYESG-----KREPNYTTLSKVARFYHVSTD 59 Query: 71 QLLDLPFSDGRTTEKK 86 LL + +K Sbjct: 60 YLLGRTDTPAEPPTRK 75 >gi|307150337|ref|YP_003885721.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980565|gb|ADN12446.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 116 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I + + L+ LA GLD T +K + + + ++ + L Sbjct: 2 EENFGQIIRKARKDKGLSQRELAESLGLDFTYLSKLENNRADYAPKEDIIRALAENL 58 >gi|166032918|ref|ZP_02235747.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] gi|166027275|gb|EDR46032.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] Length = 298 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 KI + I + +T LA K G+ S +K +R Sbjct: 5 KIGKYIASKRKSLGMTQKQLAEKLGMSDKSVSKWERGV 42 >gi|157362947|ref|YP_001469714.1| XRE family transcriptional regulator [Thermotoga lettingae TMO] gi|157313551|gb|ABV32650.1| transcriptional regulator, XRE family [Thermotoga lettingae TMO] Length = 185 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 14/163 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I + + LT LA+ +G+ P ++ + PS ++ IL+A Sbjct: 6 DNIGEKIRSLRQSKKLTVRELAKLSGVTPGLISQIEHG-----KVSPSLSTLKAILSALG 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ETI L++ D KE G S + + + + Sbjct: 61 ETIISLVEQDVGDQIIKGIVRKEERRKVIVSPGLTYELLSSKNNAYSMFISY-LEPGADS 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 YA + ++ Q + + + +I + GD Sbjct: 120 RESFYAHEGIESGIVIQGEVEI--------TVGDKSIVLREGD 154 >gi|330947175|gb|EGH47915.1| LexA repressor [Pseudomonas syringae pv. pisi str. 1704B] Length = 48 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%) Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G++ K L R + I L+ N Y V Sbjct: 1 GEVTIKRLQRRADQ-IRLLPRNPAYEPIIVTPDQ 33 >gi|331659971|ref|ZP_08360909.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206] gi|315296978|gb|EFU56258.1| helix-turn-helix protein [Escherichia coli MS 16-3] gi|331053186|gb|EGI25219.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206] Length = 370 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 36/127 (28%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ER LT LA L + + ++ GI + E I +L E Sbjct: 5 ERLRIARERRGLTQRALAEATELTSKTISNYEKAGIFDAIASDTMERISAVLGYPIEFFL 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 S + + ++ + G + + + P + Sbjct: 65 DRDVPTLSPEAVSFRAMTKLTAQKRDSALGAGKLAQELSAWIDGQFKLPKPNVPDCSFDG 124 Query: 131 YAIQTQD 137 Y+ + Sbjct: 125 YSEPERA 131 >gi|297198022|ref|ZP_06915419.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|297146969|gb|EFH28433.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 190 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 7/139 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ + +T + L+ G+ ++ ++ + R PS E + I A Sbjct: 9 EVGPRLRRLRKDREVTLAALSETTGISVSTLSRLESG-----LRKPSLELLLPIAQAHQV 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P E F P + + Sbjct: 64 PLDELVGAPPVGDPRVRSAPLERHGRTFWPLTRQPGGLQAFKVLVPRREEEPELRTHEGY 123 Query: 128 NGIYAIQTQDTRHKTQDTS 146 +Y + + Sbjct: 124 EWLYVLAGRLRV--VLGDH 140 >gi|298292634|ref|YP_003694573.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929145|gb|ADH89954.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 123 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 AI E L+ S LA KAG+ ++ + +G + ++ KI A Sbjct: 66 NAIRVWREHRGLSASSLAEKAGIARAFLSQIETGNRDG-----TVATLKKIADAL 115 >gi|241894930|ref|ZP_04782226.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] gi|241871938|gb|EER75689.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] Length = 171 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + LT + LA K G+ + + ++ G S E + I + Sbjct: 5 IKELRKSNGLTQAQLASKIGVSQPTLSLLEKDGN-------SLEDMLPIAQYFGVS 53 >gi|237739911|ref|ZP_04570392.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423519|gb|EEO38566.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 184 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 51/191 (26%), Gaps = 36/191 (18%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + ++ LA K L + ++ ++ PS E++ KI + Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L++ D R E + G I N Sbjct: 58 VAYLIEDEEDDIRNIE--------YVKAANVRYIESIDSNIKMG----------ILLASN 99 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186 ++ S Y G N + + I ++ K Sbjct: 100 KEKNMEPIIYEIGVDGESGRDYYSHG-----------NSEEFIYILEGELEVYVANKKYK 148 Query: 187 SRRGRSIDLMS 197 +G S+ S Sbjct: 149 LAKGDSLYFKS 159 >gi|256396613|ref|YP_003118177.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362839|gb|ACU76336.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 283 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 2/115 (1%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 EAI ER T L+ +GL + +R + R + + + L + Sbjct: 13 EAIRAWRERRGWTQEELSHASGLSTRAIRSLERGRT-LKPRRTTVQMLADALQVPRARLM 71 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIR 124 + D + + W +P Sbjct: 72 GTVRRAVGDADAEADGTLGNVATGSVEGDAVATVSAEARSIHAGAWVPRELPPDL 126 >gi|258651259|ref|YP_003200415.1| phage repressor [Nakamurella multipartita DSM 44233] gi|258554484|gb|ACV77426.1| putative phage repressor [Nakamurella multipartita DSM 44233] Length = 133 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLIS-RRGRSIDLMS 197 + SM P GD +++ + + G +++ R ++ K + + ++ Sbjct: 12 RVSGPSMTPTLVDGDRVLVRYGVAIRPGSVVVLVHPTRADLLLIKRAVRQQSDGRWWVLG 71 Query: 198 LNC 200 N Sbjct: 72 DNP 74 >gi|215401175|ref|YP_002332480.1| cro [Staphylococcus phage phiSauS-IPLA88] gi|215260402|gb|ACJ64533.1| gp5 [Staphylococcus phage phiSauS-IPLA88] Length = 84 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +D +R T S A K G+ P+++N + + R I K L Sbjct: 10 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRDAF--RIAKTLD 58 >gi|51247424|pdb|1SQ8|A Chain A, A Variant 434 Repressor Dna Binding Domain Devoid Of Hydroxyl Groups, Nmr, 20 Structures Length = 64 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 E I + L + LA+K G+D + + + + R + + L Sbjct: 4 GERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAK---RPRFLPELARAL 53 >gi|325961603|ref|YP_004239509.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323467690|gb|ADX71375.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 201 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 6/162 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + T LA AG+ ++ PS ++ +I A Sbjct: 12 IGSRVRQERQSRGWTLDQLAEAAGVSRRMVVNVEQGAAN-----PSVGTLLRISDALGIG 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+D P T + + L+ G G +G + H Sbjct: 67 LPALVDAPRP-RPVTVVRSGDGAALWSSARGGRGVLVAGTASPDVVELWDWILASGDQHQ 125 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + + S+ + ++ GD Sbjct: 126 SEAHAPGTKELLQVRQGSVTVVVGGETFVLDAGDAVSFPGDV 167 >gi|323359528|ref|YP_004225924.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275899|dbj|BAJ76044.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 183 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT +I + R ER +L+ S LAR+AG+ + ++ + G PS E+++ Sbjct: 1 MTDL-GDRIAATLRRERERRDLSVSELARRAGVAKATVSQLESGGGN-----PSVETLWA 54 Query: 61 ILAATNETI 69 + A Sbjct: 55 LATALEIPF 63 >gi|199597306|ref|ZP_03210737.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229551815|ref|ZP_04440540.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258507963|ref|YP_003170714.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|258539216|ref|YP_003173715.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|199591822|gb|EDY99897.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229314759|gb|EEN80732.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257147890|emb|CAR86863.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|257150892|emb|CAR89864.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|259649290|dbj|BAI41452.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 179 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 40/176 (22%), Gaps = 17/176 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + R NLT L + L ++ + PS E+ F IL+ E Sbjct: 2 DIGSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQS-----SPSLETFFDILSVLGE 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + D + Y N+ V + Sbjct: 57 SPADFFREEPVDSLVYH---ASDQVTYLDEDKGYQLKWLVPESNENEMEPVMIDFAPDGI 113 Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 + + + L L+ G+ + + Sbjct: 114 FKTFEPSPAETFVYVVSGKVKL--------LLGEQTYVAKKGETIYFHATKQHQLV 161 >gi|160878258|ref|YP_001557226.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426924|gb|ABX40487.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 163 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +KI + I + LT LA GL + +K + P ++ + Sbjct: 4 EKIGKFIADRRKVRGLTQQQLADDLGLTNKAISKWETGQG-----MPDITTLPILAEMLG 58 Query: 67 ETICQ 71 T+ + Sbjct: 59 ITVNE 63 >gi|328947544|ref|YP_004364881.1| hypothetical protein Tresu_0643 [Treponema succinifaciens DSM 2489] gi|328447868|gb|AEB13584.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 110 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++K + + E L+ LA K G+ + + G+ R E++ KI Sbjct: 1 MGNEKFMARVRELRESRKLSQEALADKVGVTKSGVAMWETRGVVPRK-----ETLEKICD 55 Query: 64 ATNET 68 T Sbjct: 56 VLGTT 60 >gi|196047881|ref|ZP_03115059.1| HTH-type transcriptional regulator SinR [Bacillus cereus 03BB108] gi|196021137|gb|EDX59866.1| HTH-type transcriptional regulator SinR [Bacillus cereus 03BB108] Length = 66 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + T LA+++G+ + ++ +R PS ++I KI T Sbjct: 2 IEQVIKEKRKNKGWTQLTLAKQSGVPQPTISQIERGERI----SPSYQNIIKIAKVLEIT 57 Query: 69 ICQ 71 I + Sbjct: 58 IEE 60 >gi|157693836|ref|YP_001488298.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682594|gb|ABV63738.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 156 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 5/101 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I +R + LA A + + +K +R R PS + + K+ ++ Sbjct: 2 IGKVIRIYRKRKGYSIQQLAEDAHVSKSYLSKIERGVH----RNPSVQFLKKVSSSLEID 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + +L D E E E + + G ++ Sbjct: 58 LQELFDAETMMFHDAESGEHEWR-EHIVNAVQSGMPKEELY 97 >gi|254302178|ref|ZP_04969536.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322370|gb|EDK87620.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 184 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 36/191 (18%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + ++ LA K L + ++ ++ PS E++ KI + Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L++ D R E +KE G I +N Sbjct: 58 VAYLIEDEEDDIRNIEHIKKENIRY--------IESLDSNIKMG----------ILLSNN 99 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186 ++ S Y G + + I ++ K Sbjct: 100 REKNMEPIIYEIGVDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148 Query: 187 SRRGRSIDLMS 197 +G S+ S Sbjct: 149 LSKGDSLYFKS 159 >gi|33593601|ref|NP_881245.1| DNA-binding protein [Bordetella pertussis Tohama I] gi|33572957|emb|CAE42899.1| DNA-binding protein [Bordetella pertussis Tohama I] gi|332383006|gb|AEE67853.1| DNA-binding protein [Bordetella pertussis CS] Length = 95 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + ++ + + LT S LA + GL + + + S E + Sbjct: 17 PLLTTGQLGAVLQAARKAQGLTQSALASRIGLSQSRVSHLELNA-----HQLSVEQLLAW 71 Query: 62 LAATN 66 AA Sbjct: 72 CAALG 76 >gi|268319240|ref|YP_003292896.1| hypothetical protein FI9785_755 [Lactobacillus johnsonii FI9785] gi|262397615|emb|CAX66629.1| sip1 [Lactobacillus johnsonii FI9785] Length = 213 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186 + + SM P + D +I ++ GD +++ G + K +I Sbjct: 28 FFVLNKYVFANLTVSGISMQPTFENNDRVIALRHAKIKEGDIVIVDAPDEPGALYIKRVI 87 Query: 187 SRRGRSID 194 G +I Sbjct: 88 GLPGDTIV 95 >gi|225405510|ref|ZP_03760699.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] gi|225042963|gb|EEG53209.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 +++ + L+ AR + + + + PS E F+I +TI +L Sbjct: 2 EQLRKEMGLSQEEFARALRVSRQTVSSIENGKYN-----PSLELAFQIADFFQKTIEELF 56 Query: 74 DLPFSDG 80 +D Sbjct: 57 LWKENDQ 63 >gi|196044284|ref|ZP_03111520.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225862972|ref|YP_002748350.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|229183334|ref|ZP_04310562.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] gi|196024923|gb|EDX63594.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225790632|gb|ACO30849.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228600118|gb|EEK57710.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] Length = 149 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + S LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|120599708|ref|YP_964282.1| bacteriophage CI repressor [Shewanella sp. W3-18-1] gi|120559801|gb|ABM25728.1| bacteriophage CI repressor [Shewanella sp. W3-18-1] Length = 230 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 56/208 (26%), Gaps = 12/208 (5%) Query: 13 IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 ++R+ + + LA G+ P SF+ + E + +I AT ++ Sbjct: 28 VERLIKLFGVKNRLELADLLGMHPGSFSTWQTRNTTPH------ELLIRIHLATGISMNY 81 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L + + K + + G K T+ S + + Sbjct: 82 LCFGISNGEQDPYKYGASKTVEFL-DGKVVEESVDGKMHARLKIVTID-DGKISSLDHFF 139 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191 A + + + L+ ++ + N + Sbjct: 140 ANTEFLNALGLDGDNDDLVVKSDGHLLFINSSKKNVNSGRYLYSIGDVYQIGTFKLLPDG 199 Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219 L N YP + + +++ Sbjct: 200 ITYLFDDNAKYP---INADVTKIHGKVV 224 >gi|6706995|gb|AAF25536.1|AF104994_6 signal peptidase [Streptomyces coelicolor A3(2)] gi|2707210|gb|AAC38083.1| signal peptidase-like protein [Streptomyces coelicolor] Length = 148 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198 + SM+P GD+L+++ +V GD ++++ +V K RRG ++ Sbjct: 25 EVTGPSMVPTLHHGDVLLVHWGARVRPGDVVVLRHPFQQDLLVVKRAAERRGAGWWVLGD 84 Query: 199 NC----CYPVDTVEMSDIEWIARI 218 N V D+ + R+ Sbjct: 85 NAFAGGDSTDYGVVPQDL-VLGRV 107 >gi|332363707|gb|EGJ41487.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 168 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 37/145 (25%), Gaps = 5/145 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL ++ Y+ S GF+ + P Sbjct: 57 TTDYLLLEDSDKAELKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152 + ++ + Sbjct: 117 KFTALVWLTFFLLIASAMAINKALK 141 >gi|317403733|gb|EFV84218.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 194 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/196 (10%), Positives = 56/196 (28%), Gaps = 27/196 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + + T A G+ ++ +K + + P+ +++ K Sbjct: 1 MQGNKQSVLAQRLRALRQARDWTLKQAALATGVSASTLSKIENGLL-----SPTYDNLIK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEK-------------KEKEIPLLYFPPSGSGGFFDSG 107 I A + +L + T + + LL S Sbjct: 56 IAAGLELDVAELFTASDAHMGTGRRSLSRQGEGRQYETPYYDHRLLCTALSHKRMMPFHT 115 Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166 + +Y ++ + + P + G+ ++S Sbjct: 116 RVKARSFDEFQDW-SRHGGEEFVYVLEGE---VELYTEFYEPARLKAGESFYIDS----R 167 Query: 167 CGDRLLIKPRTGDIVA 182 G R++ + +V Sbjct: 168 MGHRVISLSKQDALVL 183 >gi|238922527|ref|YP_002936040.1| hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656] gi|238874199|gb|ACR73906.1| Hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656] Length = 189 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 51/187 (27%), Gaps = 16/187 (8%) Query: 1 MTS--FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ SH + E + R+ + ++ +A + G+ + + ++ PS + Sbjct: 1 MSMDYLSH-NVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTAN-----PSIGVL 54 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 KI + +L+D P D + F + Sbjct: 55 GKITSGLRIEFQRLIDPPRVDYALISPDDLVPTKELLGQYRVWTCFPYEDSREVEVYRID 114 Query: 119 GVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDR 170 P G + D + + +G + + N GDR Sbjct: 115 VEPGGVYTSGGHGEKTREYLTVTDGVLTVECHDHVQEIHRGQVYKFETDQPHLYRNDGDR 174 Query: 171 LLIKPRT 177 + Sbjct: 175 VASCMCF 181 >gi|229027735|ref|ZP_04183918.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228733571|gb|EEL84372.1| transcriptional regulator, XRE [Bacillus cereus AH1272] Length = 102 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T LA+ L ++ +R R P ++ +I N + Sbjct: 5 GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58 >gi|206889709|ref|YP_002248181.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741647|gb|ACI20704.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 107 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 17/40 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 KI E I R+ + + LA K G+ K ++ + Sbjct: 2 KIGEIIKRLRKAKGFSQMELAEKIGITYQQLQKYEKGKSK 41 >gi|209883535|ref|YP_002287392.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209871731|gb|ACI91527.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 202 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 15/167 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ ++ LA GL + +K +R PS + K+ +T Sbjct: 23 LGERIRFARQQRGMSLEQLATATGLTKSYLSKVERQLAV-----PSITTALKVSRVFGQT 77 Query: 69 ICQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + QLL + K E+ L +G + P V P + Sbjct: 78 VGQLLGESLDESSLCIVRKNERHRFLKNDTHNGYNIEAIASSLPHKRMEPFVMRPPHKFH 137 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + ++ + ++ + + GD L Sbjct: 138 SDRRFTHAGEELIFVLSGQIEIE--------FIDRTVLLEAGDALYF 176 >gi|170745213|ref|YP_001766670.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658814|gb|ACB27868.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 202 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 50/175 (28%), Gaps = 16/175 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R L+ LA ++G+ + +K +R PST + ++ A T Sbjct: 22 IAEEIRRRRREQGLSLETLAARSGVSRSMISKIERSEAV-----PSTVVLSRLAEALGVT 76 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRSP 126 +L+ ++ L + G + V +P S Sbjct: 77 FSRLMAPATEREILLIPASRQPILRD--EASGYLRRCISPVLPGRGIDWVLNTLPPGAST 134 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + + + +++ GD L + G Sbjct: 135 GEFTAHRRGVSEYIYVLRGRLRAVIGERAVIM-------ETGDSLYFEADAGHAF 182 >gi|163757480|ref|ZP_02164569.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] gi|162284982|gb|EDQ35264.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] Length = 139 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EA+ ++ +T +A G+ P + + G+ PS E I + Sbjct: 1 MTPF-----GEAVRKLRAERGVTQRHMAEALGVSPAYLSALE----HGKRSEPSWEFIQR 51 Query: 61 ILAATNETICQ 71 ++ N + Sbjct: 52 VIGYFNIIWDE 62 >gi|153813159|ref|ZP_01965827.1| hypothetical protein RUMOBE_03568 [Ruminococcus obeum ATCC 29174] gi|226322369|ref|ZP_03797887.1| hypothetical protein COPCOM_00137 [Coprococcus comes ATCC 27758] gi|317501376|ref|ZP_07959578.1| hypothetical protein HMPREF1026_01522 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088400|ref|ZP_08337316.1| hypothetical protein HMPREF1025_00899 [Lachnospiraceae bacterium 3_1_46FAA] gi|149830814|gb|EDM85904.1| hypothetical protein RUMOBE_03568 [Ruminococcus obeum ATCC 29174] gi|225209227|gb|EEG91581.1| hypothetical protein COPCOM_00137 [Coprococcus comes ATCC 27758] gi|291550452|emb|CBL26714.1| Helix-turn-helix [Ruminococcus torques L2-14] gi|316897240|gb|EFV19309.1| hypothetical protein HMPREF1026_01522 [Lachnospiraceae bacterium 8_1_57FAA] gi|330408251|gb|EGG87735.1| hypothetical protein HMPREF1025_00899 [Lachnospiraceae bacterium 3_1_46FAA] Length = 138 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 4/124 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQ 71 I + + N+T + LA++ G+ + + G R S E + +I + + Sbjct: 4 IKELRKEKNITVAELAKELGISQSMLTNYENG--NGTPRDESIWEKLSQIFGVSKSHVMG 61 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L + +T + K + + ++ + E+ + + Sbjct: 62 LTTDIETANKTKQLKVVVDTSQPISIQPKNQTDLDVLIKL-DLIDSEDMEEVSEFLDKLL 120 Query: 132 AIQT 135 A + Sbjct: 121 AQEK 124 >gi|119484521|ref|ZP_01619138.1| hypothetical protein L8106_02347 [Lyngbya sp. PCC 8106] gi|119457995|gb|EAW39118.1| hypothetical protein L8106_02347 [Lyngbya sp. PCC 8106] Length = 92 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + +R L+ LA + G+ + N+ +R + PS ++ I + + Sbjct: 16 ILTLRKRLGLSQEKLATQLGVSFQTVNRWERGRTQ-----PSHLALQAIKQKLIDMDHE 69 >gi|152987325|ref|YP_001348762.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962483|gb|ABR84508.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 183 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/117 (11%), Positives = 39/117 (33%), Gaps = 5/117 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + LT + LA ++ + ++ +R P+ + ++ Sbjct: 5 ELIARRLSTLRSERRLTLAQLAERSAVSKAMISRIERNES-----SPTASVLGRLAGGLG 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T+ +LL + +++++ + +G + V +P Sbjct: 60 VTLSELLGNTQAPAAPLCRRDRQEVWEDPASGYRRRQVGARDPHSGCEMVEVEIPAD 116 >gi|53718320|ref|YP_107306.1| putative DNA binding protein [Burkholderia pseudomallei K96243] gi|76809610|ref|YP_332306.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126439864|ref|YP_001057766.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126452578|ref|YP_001065010.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|134279533|ref|ZP_01766245.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|167718185|ref|ZP_02401421.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167737218|ref|ZP_02409992.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167814348|ref|ZP_02446028.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167822825|ref|ZP_02454296.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167844399|ref|ZP_02469907.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167892913|ref|ZP_02480315.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167901398|ref|ZP_02488603.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|167909629|ref|ZP_02496720.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167917643|ref|ZP_02504734.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217419891|ref|ZP_03451397.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|237810918|ref|YP_002895369.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242315333|ref|ZP_04814349.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254181736|ref|ZP_04888333.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254187668|ref|ZP_04894180.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254196228|ref|ZP_04902652.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254260280|ref|ZP_04951334.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] gi|254296221|ref|ZP_04963678.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52208734|emb|CAH34670.1| putative DNA binding protein [Burkholderia pseudomallei K96243] gi|76579063|gb|ABA48538.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126219357|gb|ABN82863.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126226220|gb|ABN89760.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a] gi|134248733|gb|EBA48815.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|157806235|gb|EDO83405.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157935348|gb|EDO91018.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|169652971|gb|EDS85664.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184212274|gb|EDU09317.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217397195|gb|EEC37211.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|237504288|gb|ACQ96606.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242138572|gb|EES24974.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254218969|gb|EET08353.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] Length = 222 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 6/172 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 36 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 90 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ + ++ S P +++ + + + + H Sbjct: 91 VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHG 150 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + ++ + L+ V D+ GD Sbjct: 151 APRA-PGTSVNLVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDT 201 >gi|95931307|ref|ZP_01314023.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95132638|gb|EAT14321.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 219 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 20/193 (10%), Positives = 53/193 (27%), Gaps = 17/193 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + LT +A + G P ++ + + S + + Sbjct: 37 NIGAKIKELRKARKLTLQAVATETGFSPALISQIENNNVSPPIATLS--KLARFFDVKIS 94 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIR 124 + + + + + G+ + R Sbjct: 95 HFFEEEEEVRRYEVVRTVDRRVVSRVISKAGKGHGYTYEALSVHKLNKKMEPFVVTVSER 154 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 S +Y ++ T+ ++L+ + I++ GD + Sbjct: 155 SDDETMYNHDGEEFLLILNGTA--------EVLLDDERIKLEAGDAVYFDSSMRH----R 202 Query: 185 LISRRGRSIDLMS 197 L+S G + +++ Sbjct: 203 LLSYDGEEVQVLA 215 >gi|322806874|emb|CBZ04444.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 147 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I R+ E L + L+R +G++ + + +R E P+ ++ K+ T+ Sbjct: 3 GKNIKRIRELKGLGVNELSRLSGVNASYISAMERGEKE----NPTITTLKKLADTLEVTV 58 Query: 70 CQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +L+ + + G F + Sbjct: 59 DELIKEDSITHEKLKEWDNKYTDQIKEESTLYETGEFKTAEAAM 102 >gi|313905625|ref|ZP_07838987.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469572|gb|EFR64912.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 506 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S K + + + L+ LA G++ + +K + P E++ + Sbjct: 1 MKKLSVKLLANTVVSKRKEKKLSQQELADATGINRSMLSKLESRDYI--PSIPQLEALSE 58 Query: 61 ILAATNETIC 70 +L + Sbjct: 59 VLDFDPSEMY 68 >gi|253680960|ref|ZP_04861763.1| signal peptidase I [Clostridium botulinum D str. 1873] gi|253562809|gb|EES92255.1| signal peptidase I [Clostridium botulinum D str. 1873] Length = 173 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPR 176 +P + ++ + K TSM P + GD ++ ++S ++ GD ++ + Sbjct: 12 LPVGIALLLVLFIWNFIGFQVKVPSTSMSPTIKPGDHILITRVHSEKSLHRGDIVVFYSK 71 Query: 177 -TGDIVAKVLISRRGRSIDL 195 + K L+ G I + Sbjct: 72 ENNQTMIKRLMGLPGDKISI 91 >gi|228949839|ref|ZP_04112049.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809897|gb|EEM56308.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 63 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + T S LA K+G+ + + + G + PS +SI I A + Sbjct: 4 LHKVKEKRLNKGWTQSKLAEKSGVPQPTISHIEN----GTLKNPSIKSIKNIANALGINL 59 Query: 70 CQ 71 + Sbjct: 60 EE 61 >gi|256377105|ref|YP_003100765.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921408|gb|ACU36919.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 200 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/143 (6%), Positives = 35/143 (24%), Gaps = 3/143 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + +T + L+ + G+ ++ ++ + + + + Sbjct: 10 DAVGPRLRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLL--LARAYDVPL 67 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + G V P P+ Sbjct: 68 DDLVGAPRTGDPRIHLKPITRFGMTFVPLSRRPGGVHAFKMVIPAEP-EPLAPAPKTHEG 126 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP 149 +Y + + +LP Sbjct: 127 LEWLYVLSGRLRLVVGDRDLVLP 149 >gi|295837554|ref|ZP_06824487.1| transcriptional regulator [Streptomyces sp. SPB74] gi|197698364|gb|EDY45297.1| transcriptional regulator [Streptomyces sp. SPB74] Length = 226 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + LAR+A L ++ ++ + R + +S+ + A + + Sbjct: 12 VRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQ-----RRLALDSLVTLARALDTS 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + QL++ D + + + +P G T + Sbjct: 67 LDQLVETASDDVVSNPVVDGARGQMRWPVKADPGLTVVRQRMTEPPPDNPSKLRAHPGRE 126 Query: 129 GIYAIQTQDTRH 140 + + T Sbjct: 127 WLVVLSGTATLL 138 >gi|146306212|ref|YP_001186677.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145574413|gb|ABP83945.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 81 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ +A+ + L+ LA AG+D + K +R R + +I +I +A Sbjct: 16 RLGKAVRARRAQQALSQEALADAAGIDRSHMGKIERGE-----RNVTFLNIARIASALGC 70 Query: 68 TICQ 71 Sbjct: 71 KPSD 74 >gi|49482579|ref|YP_039803.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257424493|ref|ZP_05600922.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427162|ref|ZP_05603564.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429798|ref|ZP_05606185.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432502|ref|ZP_05608865.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257435404|ref|ZP_05611455.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|282902933|ref|ZP_06310826.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus C160] gi|282907332|ref|ZP_06315180.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282907675|ref|ZP_06315517.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912582|ref|ZP_06320378.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913206|ref|ZP_06320998.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus M899] gi|282921645|ref|ZP_06329363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus C427] gi|282922833|ref|ZP_06330523.1| transcriptional regulator [Staphylococcus aureus subsp. aureus C101] gi|283959786|ref|ZP_06377227.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|293498255|ref|ZP_06666109.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 58-424] gi|293509195|ref|ZP_06667913.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293550459|ref|ZP_06673131.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus M1015] gi|295426883|ref|ZP_06819522.1| transcriptional regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|297588905|ref|ZP_06947546.1| transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|49240708|emb|CAG39369.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257273511|gb|EEV05613.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276793|gb|EEV08244.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257280279|gb|EEV10866.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283381|gb|EEV13513.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257286000|gb|EEV16116.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|282315054|gb|EFB45440.1| transcriptional regulator [Staphylococcus aureus subsp. aureus C101] gi|282316060|gb|EFB46444.1| transcriptional regulator [Staphylococcus aureus subsp. aureus C427] gi|282323306|gb|EFB53625.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus M899] gi|282324278|gb|EFB54594.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282328580|gb|EFB58851.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330231|gb|EFB59752.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282597392|gb|EFC02351.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus C160] gi|283789378|gb|EFC28205.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|290919506|gb|EFD96582.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus M1015] gi|291097186|gb|EFE27444.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 58-424] gi|291467947|gb|EFF10455.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|295129335|gb|EFG58962.1| transcriptional regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577416|gb|EFH96129.1| transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|312436536|gb|ADQ75607.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315194806|gb|EFU25195.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 67 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R L + LA++AG+ + + +R PS + KI N Sbjct: 3 NRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNF-----MPSVLTAIKIARIFN 53 >gi|289422857|ref|ZP_06424689.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] gi|289156719|gb|EFD05352.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] Length = 215 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 15/139 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I R+ LT LA + L ++ + PS ++ IL Sbjct: 38 DIGEKIKRLRTGKQLTQEELANRCELSKGFISQVENNLT-----SPSIATLIDILDILGT 92 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-----PE 122 + + ++ T + ++ G+ + P K + V P Sbjct: 93 NLKEFFSEDLNEKITF-----KQDDMFEVEDEDLGYTFRWLVPNSQKNDMEPVMVEIMPG 147 Query: 123 IRSPHNGIYAIQTQDTRHK 141 R + + K Sbjct: 148 GRYKEEKPHEGEEFGYVIK 166 >gi|226948120|ref|YP_002803211.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] gi|226840862|gb|ACO83528.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] Length = 384 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 16/215 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I + I + +T LA G+ S +K + +P + + Sbjct: 1 MINLRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSS-----YPDIVLLPE 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + N ++ +LL + KK F + ++ Sbjct: 56 LATYFNISVDELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKYYSCFPF 115 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Y+ ++ ++ + IL+ + + + T + Sbjct: 116 LLSIIQLLLNYSN-------LIKNDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 168 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 +A++ + I L+ N P D+ I Sbjct: 169 LAEMTLGNSEEVIRLL-DNKLDP---YRGDDVILI 199 >gi|194291408|ref|YP_002007315.1| transcriptional regulator Xre family [Cupriavidus taiwanensis LMG 19424] gi|193225312|emb|CAQ71256.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 198 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+ + ++ L+ L+R+AG+ + ++ +R P+ ++++ A + Sbjct: 17 VGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVS 71 Query: 69 ICQL 72 + Sbjct: 72 LTDF 75 >gi|183597291|ref|ZP_02958784.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] gi|188023308|gb|EDU61348.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] Length = 185 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 3/145 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + KI + + + + NL+ + LAR +G+ + +K + R + E+I Sbjct: 1 MDKKINIKIGQKVRLLRQARNLSLNELARLSGISKAALSKLESGDSN--PRVDTLEAIA- 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + L ++ F + G + + Sbjct: 58 IALRFPLSDLFTLQHEAYPYFVKSAPQQGDYSQQFKFRINMGNISEIWQLNMKRGAIINS 117 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145 P S + + T + +D Sbjct: 118 PAHMSGTHEHIMLHTGSLMLRLKDE 142 >gi|218897578|ref|YP_002445989.1| putative DNA-binding protein [Bacillus cereus G9842] gi|228906186|ref|ZP_04070074.1| transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229110034|ref|ZP_04239611.1| transcriptional regulator [Bacillus cereus Rock1-15] gi|218543081|gb|ACK95475.1| putative DNA-binding protein [Bacillus cereus G9842] gi|228673387|gb|EEL28654.1| transcriptional regulator [Bacillus cereus Rock1-15] gi|228853443|gb|EEM98212.1| transcriptional regulator [Bacillus thuringiensis IBL 200] Length = 117 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 9/63 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FSH++ + + E+ ++T LA G+ S + P T ++ KI Sbjct: 1 MFSHER----LKSLIEKKSITQQQLADAIGVSHVSVYNYVEG-----KKAPGTRTLQKIA 51 Query: 63 AAT 65 Sbjct: 52 NYL 54 >gi|160937325|ref|ZP_02084687.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] gi|158439889|gb|EDP17638.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] Length = 88 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + + LA G++ S +K +R +P+ E++ KI+ Sbjct: 7 GPNIQTFRKLKGMKQQELADAIGINLQSLSKIERGVY-----YPTFETLEKIMVVLEVAP 61 Query: 70 CQLLDLPFSD 79 ++L + Sbjct: 62 NEMLSGTWKF 71 >gi|117623739|ref|YP_852652.1| DNA-binding transcriptional regulator HipB [Escherichia coli APEC O1] gi|218558421|ref|YP_002391334.1| DNA-binding transcriptional regulator HipB [Escherichia coli S88] gi|115512863|gb|ABJ00938.1| HipB transcriptional activator [Escherichia coli APEC O1] gi|218365190|emb|CAR02910.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|307626964|gb|ADN71268.1| DNA-binding transcriptional regulator HipB [Escherichia coli UM146] gi|315286221|gb|EFU45657.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 110-3] gi|323952534|gb|EGB48406.1| helix-turn-helix protein [Escherichia coli H252] gi|323956713|gb|EGB52448.1| helix-turn-helix protein [Escherichia coli H263] Length = 88 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 12 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PNNTSLTTFFKILQSLEL 66 Query: 68 TI 69 ++ Sbjct: 67 SM 68 >gi|222055496|ref|YP_002537858.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564785|gb|ACM20757.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 117 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 26/88 (29%) Query: 3 SFSHKKI-------------WEAID----------RMAERHNLTPSGLARKAGLDPTSFN 39 +HK++ ++A+D + +T + +A + G ++ Sbjct: 1 MLTHKELKDRALQRADVKTEYDALDEEFRFLDEFLKARAAAGVTQAEVAERIGTTQSAIA 60 Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNE 67 + + G PS ++ K A Sbjct: 61 RLESG---GGKHSPSIATLQKYAHALGC 85 >gi|91210760|ref|YP_540746.1| DNA-binding transcriptional regulator HipB [Escherichia coli UTI89] gi|237705488|ref|ZP_04535969.1| HipB transcriptional activator [Escherichia sp. 3_2_53FAA] gi|91072334|gb|ABE07215.1| HipB transcriptional activator [Escherichia coli UTI89] gi|226900245|gb|EEH86504.1| HipB transcriptional activator [Escherichia sp. 3_2_53FAA] gi|294489456|gb|ADE88212.1| transcriptional regulator HipB [Escherichia coli IHE3034] Length = 94 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 18 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PNNTSLTTFFKILQSLEL 72 Query: 68 TI 69 ++ Sbjct: 73 SM 74 >gi|330467774|ref|YP_004405517.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810745|gb|AEB44917.1| transcriptional regulator, XRE family protein [Verrucosispora maris AB-18-032] Length = 178 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + ++H++T LA A + P ++ + + PS ++ K+ + + Sbjct: 2 LGDRLRDLRQQHSMTLRQLATAADVSPALLSQIENGATD-----PSLSTLRKLAQVFDTS 56 Query: 69 ICQLLDLPF 77 I +L P Sbjct: 57 IAELFSEPE 65 >gi|326781392|ref|ZP_08240657.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326661725|gb|EGE46571.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 203 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/132 (9%), Positives = 39/132 (29%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + LA +A + ++ ++ + R + + + + A + + Sbjct: 12 VRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENG-----RRRLALDQLVTLARALDTS 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + QL++ D + + L +P G T + Sbjct: 67 LDQLVETASDDIVSNPTVDGAHGQLRWPIKAEPGMTVIRQRVTEPPPDNPARLRAHPGRE 126 Query: 129 GIYAIQTQDTRH 140 + + Sbjct: 127 WLVVLSGTAILL 138 >gi|307299363|ref|ZP_07579164.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915159|gb|EFN45545.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] Length = 183 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 7/141 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT I + + + ++ LA +G+ + ++ + + PS ++ K Sbjct: 1 MTEL--DNIGNKLRSLRQARKISIKKLADTSGVSSSLISQIEHGKV-----SPSLNTLKK 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 IL A ET+ L+ S+ ++E + G S + + + + Sbjct: 54 ILNAMGETVISLVQQNSSENTMKGLIKREDRMTVTVAPGLYYEVLSAPNKSYSMFISYLS 113 Query: 121 PEIRSPHNGIYAIQTQDTRHK 141 P+ + I+ K Sbjct: 114 PDAGTEDFFIHEGIESGIMLK 134 >gi|297246885|ref|ZP_06930668.1| Gp5 [Staphylococcus aureus A8796] gi|304379057|ref|ZP_07361804.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|297176279|gb|EFH35563.1| Gp5 [Staphylococcus aureus A8796] gi|304342292|gb|EFM08184.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 84 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +D +R T S A K G+ P+++N + + R I K L Sbjct: 10 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRDAF--RIAKTLD 58 >gi|291518638|emb|CBK73859.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 114 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I ++ E +T + G+ ++ + KR + PS + I I + + Sbjct: 3 ISERIFKLMEEKGMTQLEFSAGTGIAQSTISDWKR-----KKTNPSADKIMVISDVLDVS 57 Query: 69 ICQ 71 + Sbjct: 58 PFE 60 >gi|289748952|ref|ZP_06508330.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289689539|gb|EFD56968.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 341 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 48 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 102 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 103 ATFFASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHP 144 >gi|257867362|ref|ZP_05647015.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257873693|ref|ZP_05653346.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] gi|257801418|gb|EEV30348.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257807857|gb|EEV36679.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] Length = 180 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 5/93 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + NLT L + L ++ +R PS E+ F IL Sbjct: 2 EIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLS-----SPSMETFFTILEVLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 T + + + ++E Sbjct: 57 TPEEFFREENAQHQVVYREEDSTLYYDEENGYE 89 >gi|227823870|ref|YP_002827843.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227342872|gb|ACP27090.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 125 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EA+ + R ++ +A G+ P + + G+ PS + + + Sbjct: 1 MTPF-----GEAMRELRRRKGVSQKEMAAAIGVSPAYLSALE----HGKRGAPSFDFLQR 51 Query: 61 ILAATNETICQ 71 + N + Sbjct: 52 VAGYFNVIWDE 62 >gi|291287070|ref|YP_003503886.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884230|gb|ADD67930.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 196 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/144 (9%), Positives = 43/144 (29%), Gaps = 11/144 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + KI E + ++ LT +A G ++ + + P ++ KI Sbjct: 4 TEVKIGERVRKIRNERGLTLQDVANFTGFSKALISQIENNIV-----MPPINTLSKIAKV 58 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---- 120 N + + +K+ F G+ + + ++ + + Sbjct: 59 LNV-KMTYFFEEEINQKDYYVVKKDQKKFIFREGVKHGYMYEELAKVKS-FDYLDLLLVT 116 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 + +++ + + + Sbjct: 117 IKPDKRDEKLFSHEGYEYMFVVEG 140 >gi|215429287|ref|ZP_03427206.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|219556284|ref|ZP_03535360.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T17] gi|260199463|ref|ZP_05766954.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T46] gi|289441846|ref|ZP_06431590.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289568383|ref|ZP_06448610.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289752496|ref|ZP_06511874.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289414765|gb|EFD12005.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289542136|gb|EFD45785.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289693083|gb|EFD60512.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 474 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHP 102 >gi|297199962|ref|ZP_06917359.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|197710434|gb|EDY54468.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 281 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + +++ + R+ ER LT + G+ + ++ + EG +WP+ +++ + Sbjct: 5 PTTRRRQLGADLRRLRERKGLTLEEAGARVGISKATLSRYE--TKEGTVKWPAVDALCR 61 >gi|168179538|ref|ZP_02614202.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182669756|gb|EDT81732.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 136 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + R +L + LA+ + + + + R P T ++ K+ N Sbjct: 3 EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57 Query: 68 TICQLLDLPFSDGR 81 ++ +L + Sbjct: 58 SVDYILGRSENRNG 71 >gi|153939491|ref|YP_001392322.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|168181734|ref|ZP_02616398.1| DNA-binding protein [Clostridium botulinum Bf] gi|170757018|ref|YP_001782679.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|226950473|ref|YP_002805564.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|237796500|ref|YP_002864052.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|152935387|gb|ABS40885.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|169122230|gb|ACA46066.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|182675110|gb|EDT87071.1| DNA-binding protein [Clostridium botulinum Bf] gi|226841145|gb|ACO83811.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|229263475|gb|ACQ54508.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|295320315|gb|ADG00693.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 136 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + R +L + LA+ + + + + R P T ++ K+ N Sbjct: 3 EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57 Query: 68 TICQLLDLPFSDGR 81 ++ +L + Sbjct: 58 SVDYILGRSENRNG 71 >gi|148380996|ref|YP_001255537.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932705|ref|YP_001385366.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936433|ref|YP_001388773.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148290480|emb|CAL84608.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928749|gb|ABS34249.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932347|gb|ABS37846.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 136 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + R +L + LA+ + + + + R P T ++ K+ N Sbjct: 3 EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57 Query: 68 TICQLLDLPFSDGR 81 ++ +L + Sbjct: 58 SVDYILGRSENRNG 71 >gi|323702873|ref|ZP_08114531.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532131|gb|EGB22012.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 132 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K I + I E+ L+ A GL + +R R S + KI+ Sbjct: 9 NKTIGQRIREEREKLGLSREEFAEIIGLSNYYVGQLERGE-----RQMSLPVLVKIVNCL 63 Query: 66 NETICQLLDLPFSDGRTTEKKEK 88 + ++ L+ + + Sbjct: 64 HVSLDYLIFGKDYQNAGNVNESQ 86 >gi|320332978|ref|YP_004169689.1| XRE family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754267|gb|ADV66024.1| transcriptional regulator, XRE family [Deinococcus maricopensis DSM 21211] Length = 73 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 14/36 (38%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + ++ T S LA + + + N + + Sbjct: 10 IRALRKQRGWTQSDLAEQLDVSRQTINAIETGKYDP 45 >gi|284097787|ref|ZP_06385776.1| prophage repressor [Candidatus Poribacteria sp. WGA-A3] gi|283830687|gb|EFC34808.1| prophage repressor [Candidatus Poribacteria sp. WGA-A3] Length = 130 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 M + + E I E L+ + +A+ + ++ N+ ++ + Sbjct: 1 MNTLT-----ERIRSAREEAGLSQADVAKALRISASAVNQWEQGLTK 42 >gi|260185332|ref|ZP_05762806.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis CPHL_A] gi|289446007|ref|ZP_06435751.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289418965|gb|EFD16166.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] Length = 474 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102 >gi|215409982|ref|ZP_03418790.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|215444567|ref|ZP_03431319.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289756539|ref|ZP_06515917.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294995970|ref|ZP_06801661.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|298523942|ref|ZP_07011351.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|289712103|gb|EFD76115.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298493736|gb|EFI29030.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|326902291|gb|EGE49224.1| transcriptional regulator [Mycobacterium tuberculosis W-148] Length = 474 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102 >gi|215402217|ref|ZP_03414398.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289744162|ref|ZP_06503540.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289684690|gb|EFD52178.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] Length = 474 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102 >gi|188587144|ref|YP_001918689.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351831|gb|ACB86101.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 116 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S +K+ E + +NLT L+ + G++ + ++ PS + K Sbjct: 1 MKKLSTEKLAETVKFKRNENNLTQEELSEQTGINRVMIGRIEKQDFI-----PSINQLEK 55 Query: 61 ILAATNETICQ 71 + A I Sbjct: 56 LADALEFEITD 66 >gi|226196720|ref|ZP_03792300.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|225931251|gb|EEH27258.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] Length = 218 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 6/172 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 32 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ + ++ S P +++ + + + + H Sbjct: 87 VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHG 146 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + ++ + L+ V D+ GD Sbjct: 147 APRA-PGTSVNLVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDT 197 >gi|50085608|ref|YP_047118.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49531584|emb|CAG69296.1| putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 198 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 37/141 (26%), Gaps = 9/141 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I R + L S +A+ AG+ +K + + S E++ ++ Sbjct: 14 IGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVST-----SLETLSRLCDVLGIP 68 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFPTGNKWNTVGVPEIR 124 + L + + G P N + + Sbjct: 69 MSTLFSQYDQQESHAMLVKSGDGMEVVRRGTEKGHTYRLLTHSRGPRKNFEAYLVSMDDA 128 Query: 125 SPHNGIYAIQTQDTRHKTQDT 145 S +A + + + Sbjct: 129 SEEFPTFAHPGTEMLYLVEGE 149 >gi|15607606|ref|NP_214979.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839854|ref|NP_334891.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|148660231|ref|YP_001281754.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148821663|ref|YP_001286417.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167970715|ref|ZP_02552992.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|253797392|ref|YP_003030393.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254230812|ref|ZP_04924139.1| hypothetical protein TBCG_00456 [Mycobacterium tuberculosis C] gi|254363429|ref|ZP_04979475.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|254549412|ref|ZP_05139859.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289552715|ref|ZP_06441925.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|297632949|ref|ZP_06950729.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297729924|ref|ZP_06959042.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|306774562|ref|ZP_07412899.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306779310|ref|ZP_07417647.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306783100|ref|ZP_07421422.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306787468|ref|ZP_07425790.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792019|ref|ZP_07430321.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306796205|ref|ZP_07434507.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306802063|ref|ZP_07438731.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306806274|ref|ZP_07442942.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306966470|ref|ZP_07479131.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306970666|ref|ZP_07483327.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307078390|ref|ZP_07487560.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307082949|ref|ZP_07492062.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657253|ref|ZP_07814133.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|81669529|sp|O53750|Y465_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator Rv0465c/MT0481 gi|2909541|emb|CAA17420.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13879988|gb|AAK44705.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|124599871|gb|EAY58881.1| hypothetical protein TBCG_00456 [Mycobacterium tuberculosis C] gi|134148943|gb|EBA40988.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148504383|gb|ABQ72192.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148720190|gb|ABR04815.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|253318895|gb|ACT23498.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289437347|gb|EFD19840.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|308216911|gb|EFO76310.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308327755|gb|EFP16606.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308332117|gb|EFP20968.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308335845|gb|EFP24696.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339508|gb|EFP28359.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308343374|gb|EFP32225.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308347283|gb|EFP36134.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308351213|gb|EFP40064.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308355866|gb|EFP44717.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308359787|gb|EFP48638.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308363727|gb|EFP52578.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308367383|gb|EFP56234.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323721139|gb|EGB30201.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|328457178|gb|AEB02601.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 474 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102 >gi|329925525|ref|ZP_08280399.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|328939808|gb|EGG36148.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 68 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K++ + I + LT LA ++G+ +R R + + +I Sbjct: 3 NKQLAQRIRAFRKLKGLTQQELAERSGISLAVLGAIERGN-----RRAEEQMLAQIADVL 57 Query: 66 NETICQ 71 T+ + Sbjct: 58 EITLQE 63 >gi|315038706|ref|YP_004032274.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] gi|312276839|gb|ADQ59479.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] Length = 135 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ ++ S LA+ G+ ++ ++ + P + + KI A N + Sbjct: 1 MNRIREIRKKQGISQSKLAQLTGIPTSTLSEFENG-----LHDPGEDRLRKIAQALNVS 54 >gi|301066917|ref|YP_003788940.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|300439324|gb|ADK19090.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 344 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I LT LA K G+ + +K ++ +P + + Sbjct: 3 IDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVS-----YPDITLLPALARILGTD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + LL + + E + +G Sbjct: 58 VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93 >gi|293610665|ref|ZP_06692965.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827009|gb|EFF85374.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 183 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 17/157 (10%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T H + I + + +L+ LA AG+ + + + S + I Sbjct: 6 TVLQH--VGTNIRSLRDERDLSQQDLADLAGVSRRTIAALETGQVN-----ISLAKLDSI 58 Query: 62 LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 A ++ P + +E + LL PS S G Sbjct: 59 AAVLGVDFKTIVSAPEHKEHAVVNALAWQGKDEESKATLLASVPSRSQVELWIWSLAVG- 117 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + V + IY ++ + T ++P Sbjct: 118 -ESYVAEADADGWQEIIYVLEGELIIQFTDSKKIIPA 153 >gi|239629798|ref|ZP_04672829.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527410|gb|EEQ66411.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 344 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I LT LA K G+ + +K ++ +P + + Sbjct: 3 IDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVS-----YPDITLLPALARILGTD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + LL + + E + +G Sbjct: 58 VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93 >gi|160899167|ref|YP_001564749.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364751|gb|ABX36364.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 63 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + + + LA G+ + N + + P +I ++ Sbjct: 5 IRELRAQRGWSQAALADLLGVSRQTVNAIETGRYD--PSLPLAFAIARVFE 53 >gi|83746380|ref|ZP_00943432.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|207744667|ref|YP_002261059.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] gi|83726921|gb|EAP74047.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|206596074|emb|CAQ63001.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] Length = 209 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA + G+ + + +R P+ + K+ A Sbjct: 17 NERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAA-----SPTAAVLDKLAAGL 71 Query: 66 NET 68 + Sbjct: 72 GVS 74 >gi|116495345|ref|YP_807079.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116105495|gb|ABJ70637.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 344 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I LT LA K G+ + +K ++ +P + + Sbjct: 3 IDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVS-----YPDITLLPALARILGTD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + LL + + E + +G Sbjct: 58 VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93 >gi|325662744|ref|ZP_08151338.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470981|gb|EGC74209.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] Length = 194 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 2/57 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I E I + ++ LA G + K + IE + K+L T Sbjct: 9 IGERIKTLRKKRGYNQKDLATLLGKSLRTIQKYESGEIEVSI--AMVNELAKVLDTT 63 >gi|315122908|ref|YP_004063397.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496310|gb|ADR52909.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 210 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 5/95 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + + +T GL ++ + +R P ++ KI A + Sbjct: 95 EIGERIKKFRKEEGMTLKEFGEWVGLPVSTVSTYERGIS-----APEIKTALKIKRALGK 149 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + + + + S G Sbjct: 150 PLDWIYFGDEEIVPKKSRLRAKQSNFHQNQRKSQG 184 >gi|300904120|ref|ZP_07121994.1| transcriptional repressor DicA [Escherichia coli MS 84-1] gi|301307000|ref|ZP_07213040.1| transcriptional repressor DicA [Escherichia coli MS 124-1] gi|300403913|gb|EFJ87451.1| transcriptional repressor DicA [Escherichia coli MS 84-1] gi|300837790|gb|EFK65550.1| transcriptional repressor DicA [Escherichia coli MS 124-1] gi|315253246|gb|EFU33214.1| transcriptional repressor DicA [Escherichia coli MS 85-1] Length = 135 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 8/114 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + + LT AR AG+ + ++ +R + P + +F Sbjct: 1 MDTRT---LGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQ-----PVGKRLFA 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + A + L+ ++ L FD+ Sbjct: 53 LADALKCSPTWLMFGDEDKAPVPAQELHVETELTPSHKELIELFDALPSSEQEA 106 >gi|268610635|ref|ZP_06144362.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I R+ +T LA + + + +K +R P + + Sbjct: 32 IKRLRTELGMTQKQLAERINVSDKAVSKWERGNG-----CPDVSLLSALADVFGTD 82 >gi|260556875|ref|ZP_05829092.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260409481|gb|EEX02782.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 210 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 17/144 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + H + I + + H+L+ LA +AG+ + + + S + I Sbjct: 33 SVLQH--VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 85 Query: 62 LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 A ++ P EK+E + L PS S + G Sbjct: 86 AAVLGVDFRTIVSAPEHKEHALVNALAWQGEKEESKATFLASVPSRSQIELWTWSLAVG- 144 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137 + V + IY ++ + Sbjct: 145 -ESYVAEADAEGWQELIYVLEGEL 167 >gi|258440879|ref|ZP_05690714.1| transcription regulator [Staphylococcus aureus A8115] gi|282894661|ref|ZP_06302888.1| hypothetical protein SGAG_02008 [Staphylococcus aureus A8117] gi|257852393|gb|EEV76314.1| transcription regulator [Staphylococcus aureus A8115] gi|282762938|gb|EFC03071.1| hypothetical protein SGAG_02008 [Staphylococcus aureus A8117] Length = 77 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 18/40 (45%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 +D +R T S A K G+ P+++N + + R Sbjct: 3 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRD 42 >gi|256396029|ref|YP_003117593.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362255|gb|ACU75752.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 1334 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 32/143 (22%), Gaps = 5/143 (3%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + A+ + E LT A+ GL ++ R+P + Sbjct: 20 TRAEFGRALTELREAAGLTIRDAAKGLGLPSSTIGGYLTGRHLPPVRFPDL-----LPDF 74 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 R + + S S +G P W Sbjct: 75 LRMCGVSDPSEIEEWVRALWRIRRASGQRATAGSQSPYRGLAGFQPEHAAWFYGRESLTD 134 Query: 125 SPHNGIYAIQTQDTRHKTQDTSM 147 I A + D S Sbjct: 135 LLIGRILADEPPDGPVLVVGASG 157 >gi|222086392|ref|YP_002544926.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221723840|gb|ACM26996.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I I E + + LA ++ + +K +R P+ + K+ A Sbjct: 21 KRIGTRIRIERESRGWSLTELAERSAVSRAMIHKIERGDS-----SPTATLLGKLSGAFG 75 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ L+ +K + + Sbjct: 76 LSMSTLMARAEMHQGRLLRKGDQPVWV 102 >gi|213966374|ref|ZP_03394554.1| transcriptional regulator, HTH_3 family [Corynebacterium amycolatum SK46] gi|213950971|gb|EEB62373.1| transcriptional regulator, HTH_3 family [Corynebacterium amycolatum SK46] Length = 87 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I+ I + H L+ + LA++ ++P + +R + +PS + F+I A Sbjct: 11 IFNRISVLRAEHGLSRAELAKQVEVNPQTIGALERG-----DHYPSLDLAFRICAVF 62 >gi|212697015|ref|ZP_03305143.1| hypothetical protein ANHYDRO_01580 [Anaerococcus hydrogenalis DSM 7454] gi|212675985|gb|EEB35592.1| hypothetical protein ANHYDRO_01580 [Anaerococcus hydrogenalis DSM 7454] Length = 489 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 17/181 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S +K+ + + + N + L+ G++ T ++ + PS + + Sbjct: 1 MKKLSVEKLADFVSTYRKSKNFSQRNLSDLTGINRTMISRIESCDYV-----PSIDQLQA 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + I L ++ K + + +G G + + N+ V + Sbjct: 56 LAEVLGFDIVDLF--VEEGKKSFMKNIDKKYKIAVAGTGYVGLSIATLLAQNNQVTAVDI 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD---ILILNSAIQVNCGDRLLIKPRT 177 + + QD + R+ D L+ D ++I T Sbjct: 114 VKEKVDLINERKSP-------IQDDYIEKYLREKDLDLTATLDGEAAYRDADFVVIAAPT 166 Query: 178 G 178 Sbjct: 167 N 167 >gi|168210926|ref|ZP_02636551.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|209947633|ref|YP_002291140.1| putative LexA repressor [Clostridium perfringens] gi|170711066|gb|EDT23248.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|209910424|dbj|BAG75513.1| putative LexA repressor [Clostridium perfringens] Length = 379 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193 + + SM L++ +++I GD ++ + I ++ + Sbjct: 269 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIASLSENNEATC-KKIHKKKDKL 327 Query: 194 DLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222 +L + Y + + SDI I ++ S Sbjct: 328 ELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 357 Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 7/64 (10%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + ++ A++ + ++ + +R E P ++ K+ N Sbjct: 9 RLATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSE-----PPIYTLVKMSEVMNC 63 Query: 68 TICQ 71 +I + Sbjct: 64 SIDE 67 >gi|167957582|ref|ZP_02544656.1| UDP-N-acetylglucosamine transferase [candidate division TM7 single-cell isolate TM7c] Length = 508 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 5/59 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +KI I T + LA ++ N+ ++ G S E I +I Sbjct: 8 EKIGNLIQENRIMRGWTQAQLAEALDTSQSAINRIEKGGQN-----ISLEMIARIGEVL 61 >gi|167835510|ref|ZP_02462393.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 222 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 6/172 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 36 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 90 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ + ++ S P +++ + + + + Sbjct: 91 VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEPG 150 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 A + ++ L+ V D+ GD Sbjct: 151 APRA-PGTSVNLVVSEGTLEVSIHDRRQLLATGDAIVFDADQPYALRNPGDT 201 >gi|149278961|ref|ZP_01885095.1| hypothetical protein PBAL39_03749 [Pedobacter sp. BAL39] gi|149230240|gb|EDM35625.1| hypothetical protein PBAL39_03749 [Pedobacter sp. BAL39] Length = 232 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 56/220 (25%), Gaps = 34/220 (15%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPSGLA----RKAGLDPTSFNKSKRFGIEGRNRWP 53 M + SH + I + +LT + R G + +S KR + R Sbjct: 5 MKT-SHPQQIMIGPRLKEARLLRDLTLAEFYTPITRHIG-NCSSIENGKRIIGKRLTR-- 60 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 L L G K + L FF+ + Sbjct: 61 ---------DIAEYHHINLKFLTTGTGEIFTKPIDDRQHLLPATQHGVPFFNVDLADATF 111 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 V N SM P + G+I+I+ ++ D + Sbjct: 112 GTTQVFQETAEYYVNYKPFNDCNAY-LPIYGESMHPKFSSGEIIIV---KEILNRDIVQW 167 Query: 174 ---------KPRTGDIVAKVLISRRG-RSIDLMSLNCCYP 203 + K+L I L SLN + Sbjct: 168 GEAYLIVTDEQANNMTTVKLLFEHEDQGKIILRSLNPEFK 207 >gi|328949375|ref|YP_004366712.1| hypothetical protein Tresu_2553 [Treponema succinifaciens DSM 2489] gi|328449699|gb|AEB15415.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 93 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + ++ LA K G+ S + + I PS E + KI + Sbjct: 4 EQIRELRNIRGISQIQLANKLGVTKQSVSNWENDNI-----LPSIEMLVKIANFFEVS 56 >gi|310815538|ref|YP_003963502.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] gi|308754273|gb|ADO42202.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] Length = 214 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 5/79 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + +++ LT L+ +AGL ++ +R PS S+ ++ I Sbjct: 30 GSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAV-----PSLGSLARLAQVLQVDI 84 Query: 70 CQLLDLPFSDGRTTEKKEK 88 + P + + Sbjct: 85 DHFISTPRPSDSLSRAAGR 103 >gi|332654275|ref|ZP_08420019.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] gi|332517361|gb|EGJ46966.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] Length = 394 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 6/68 (8%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + ++ + + + + +T LA + G+ + ++ + +P ++ + Sbjct: 1 MNEQEFAQRLRQYRKNKGMTQQELADQLGVSNKTVSRWESGS------YPDVTTLVALAR 54 Query: 64 ATNETICQ 71 T+ + Sbjct: 55 VLGVTVDE 62 >gi|257883596|ref|ZP_05663249.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257819254|gb|EEV46582.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] Length = 383 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 2/62 (3%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I + + N+T + A GL + + + E+I + L Sbjct: 124 LKNLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKT--LEAIARALD 181 Query: 64 AT 65 Sbjct: 182 VP 183 >gi|164687400|ref|ZP_02211428.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] gi|164603174|gb|EDQ96639.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] Length = 179 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 44/216 (20%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I M LT LA + L ++ + PS ++ IL Sbjct: 2 DIGSKIKSMRMEKQLTQEELANRCELSKGFISQLENNLT-----SPSIATLIDILEILGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + T +K++ E +S T+ P + Sbjct: 57 NLREFFNEIDPERITFKKEDMFETEDEELKYHLKWLIPNSQKNMMEPIIITL-YPGGQYK 115 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + + ++ + +L + + +V G+ KPR I Sbjct: 116 EEKPH--EGEEFGYVVAGNILLH--------LGDRVNKVKKGESFYFKPRMNH-----YI 160 Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 S G++ A+++W S Sbjct: 161 SNPGKT----------------------TAKVIWVS 174 >gi|116072332|ref|ZP_01469599.1| possible peptidase S26 family protein [Synechococcus sp. BL107] gi|116064854|gb|EAU70613.1| possible peptidase S26 family protein [Synechococcus sp. BL107] Length = 105 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 6/70 (8%) Query: 138 TRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKP--RTGDIVAKVLISRRGR 191 K + SM P D +++ G ++ R G + K L S Sbjct: 1 MLLKVEGESMRPTLNPDDRVLVRRTSADTDTPPLGAVVVAWHPLRPGLRLIKRLQSVGHD 60 Query: 192 SIDLMSLNCC 201 + L+ N Sbjct: 61 GMILLGDNPS 70 >gi|108797614|ref|YP_637811.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119866701|ref|YP_936653.1| hypothetical protein Mkms_0647 [Mycobacterium sp. KMS] gi|108768033|gb|ABG06755.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119692790|gb|ABL89863.1| protein of unknown function DUF955 [Mycobacterium sp. KMS] Length = 475 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + ++ L S PT Sbjct: 61 ATFFASQDDTRLVAELREVAMDRELGVEVDVSEIADMVAAHPT 103 >gi|57641201|ref|YP_183679.1| transcription regulator [Thermococcus kodakarensis KOD1] gi|57159525|dbj|BAD85455.1| predicted transcription regulator, containing CBS domains [Thermococcus kodakarensis KOD1] Length = 192 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 5/101 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + +T LA+KAG+ K + ++ P ++ +IL A E Sbjct: 13 IRKIRKELGITQEELAKKAGVTQAYIAKLEAGKVD-----PRLSTLNRILQALLECKKAQ 67 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + +GN Sbjct: 68 PKARDVMSSPVISVKPYDSVEKVIRLMNEHNISQIPVISGN 108 >gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] Length = 516 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 16/37 (43%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 +I I + LT LA + G ++ ++ ++ Sbjct: 17 QIGALIRDARKHRGLTQVQLAERLGTSQSAVHRMEQG 53 >gi|326562075|gb|EGE12403.1| putative prophage repressor [Moraxella catarrhalis 7169] Length = 196 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 54/203 (26%), Gaps = 46/203 (22%) Query: 25 SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84 + +A+K ++P + R R + + I + + S Sbjct: 25 TEIAKKLQVEPPTVTNW-------RWRGIAHDKIIPLAQLYGLDAHYIATGERSIQNQVN 77 Query: 85 KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + + + S + G W + Sbjct: 78 N---QHGYIGGSVNQSVVNNYANQLTEGEDW------------------------LTIIN 110 Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI--------DLM 196 M P + GD + +++ + G+ + + K+L R + L+ Sbjct: 111 NDMFPAFAIGDCVRIDTKQEAQAGNYVYVDCEGK----KMLRKYRPKGYDENGTPYTHLV 166 Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219 + N YPV + ++ Sbjct: 167 AENDDYPVIDSRHQAFTVLGVVM 189 >gi|322807345|emb|CBZ04919.1| repressor (CI-like) [Bacteriophage A118] [Clostridium botulinum H04402 065] Length = 136 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + R +L + LA+ + + + + R P T ++ K+ N Sbjct: 3 EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57 Query: 68 TICQLLDLPFSDGR 81 ++ +L + Sbjct: 58 SVDYILGRSENRNG 71 >gi|322386543|ref|ZP_08060170.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269462|gb|EFX52395.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 43/167 (25%), Gaps = 9/167 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 3 KLADKLFELRKEKGWSQERLAEQISVSRQSISKWESGQA-----LPELEKIVELSKIFQV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL ++ Y+ S GF+ + P Sbjct: 58 TTDYLLLEDSDKPEIKPILSEDEKDRYYKEVKSYGFWQVLYIFISALAIFLFFAGSSFPA 117 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKG----DILILNSAIQVNCGDR 170 + ++ + D +I GD+ Sbjct: 118 TFTALVWLSFFLLIASAMAINKALKIKKKYLDKVIDLDEASKKEGDK 164 >gi|303241951|ref|ZP_07328444.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590506|gb|EFL60261.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 103 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + ++ L+ + L+ G+ ++ + + PS E + KI+ A N Sbjct: 5 DLGKRIKELRKQSGLSTTKLSNLTGISSGYISELENN-----LKSPSAEILLKIIDALNI 59 Query: 68 T 68 T Sbjct: 60 T 60 >gi|257068924|ref|YP_003155179.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Brachybacterium faecium DSM 4810] gi|256559742|gb|ACU85589.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Brachybacterium faecium DSM 4810] Length = 517 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I + LT + LA + G ++ N+ ++ + E++ KI +A Sbjct: 16 RIGTLIRDARQHSGLTQAQLASELGTSQSAVNRIEKGQQN-----LTLETLSKIGSAL 68 >gi|322420390|ref|YP_004199613.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320126777|gb|ADW14337.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 3 SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + K++ I + + L+ LA K G+DP ++ + G PS +++ I Sbjct: 1 MQTAKQLLGLRIREVRKARQLSQEKLAEKVGVDPKQISRIE-----GGKSAPSLDTLEAI 55 Query: 62 LAATNETICQLLDLPF 77 I L D Sbjct: 56 AKHLQVEIKDLFDFQH 71 >gi|229120644|ref|ZP_04249888.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|301052670|ref|YP_003790881.1| putative transcriptional regulator [Bacillus anthracis CI] gi|228662817|gb|EEL18413.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|300374839|gb|ADK03743.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 149 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + S LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|291288151|ref|YP_003504967.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885311|gb|ADD69011.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 273 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/123 (9%), Positives = 30/123 (24%), Gaps = 12/123 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL------ 62 + I ++ +R + + R GL P+ + +R P E++ +I Sbjct: 2 LGNKIRKLIKRKGIKQVDVCRAVGLSPSRLSNYLSG-----SREPDLETLSRIARFLEVK 56 Query: 63 -AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + ++++ G + Sbjct: 57 LDYFAYGDNIKNTKETGENIKKMREKRGFTKNDLAAVAKMDVQALTRIELGYGEFERDLI 116 Query: 122 EIR 124 E Sbjct: 117 ENL 119 Score = 42.1 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 59/207 (28%), Gaps = 23/207 (11%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ E I +M E+ T + LA A +D + + + E + I + + Sbjct: 70 KETGENIKKMREKRGFTKNDLAAVAKMDVQALTRIELGYGE-----FERDLIENLASCLT 124 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ L+ E + + P + Sbjct: 125 CSVADLIGAEEGY-------SFEQGAQQSVAAENEAVVYEPSVP---GIE----ISLADV 170 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVL 185 +G ++ D P + DIL + ++ + +++ T K + Sbjct: 171 EDGRCEMEKGAFWAYVNDGRFAPKVNETDILYIEKVSLDLIDDRDVVLYFDTD--SLKFM 228 Query: 186 I-SRRGRSIDLMSLNCCYPVDTVEMSD 211 G +I + T + D Sbjct: 229 RAFLSGGNIIMAPEVGAGAPVTYQKDD 255 >gi|240143885|ref|ZP_04742486.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|257204077|gb|EEV02362.1| DNA-binding protein [Roseburia intestinalis L1-82] Length = 298 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I ++ +T LA K G S +K +R P ++ Sbjct: 5 KIGSYIAEKRKKLGMTQKQLAEKLGKSDKSVSKWERGIC-----LPDVSVYLELCEILGI 59 Query: 68 TICQL 72 ++ + Sbjct: 60 SLNEF 64 >gi|49081786|gb|AAT50293.1| PA1884 [synthetic construct] Length = 184 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 5/117 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + + LT + LA + + ++ +R P+ + ++ Sbjct: 5 ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLAGGLG 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + +LL + ++ ++ + +G + V +P Sbjct: 60 VALSELLGDAQAPAEPLCRRAQQEVWEDPASGYRRRQVGARDPRSGCEMVEVEIPAN 116 >gi|81427764|ref|YP_394763.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609405|emb|CAI54451.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 68 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + N T + LA + G+ + +++ PS E FKI Sbjct: 2 IQNRIKVLRAERNWTQADLAERTGISRQAVISIEKYKYT-----PSLELAFKIAQVFGVE 56 Query: 69 ICQLLDLPF 77 I + Sbjct: 57 ITTVFSPEE 65 >gi|53718202|ref|YP_107188.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167737073|ref|ZP_02409847.1| putative DNA-binding protein [Burkholderia pseudomallei 14] gi|167814187|ref|ZP_02445867.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|52208616|emb|CAH34552.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 125 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + ++ LT + +A + +D + ++ +R + P ++ ++ A + Sbjct: 9 IGRNIASVRKQRGLTQAAVAEQIDVDAETVSRFERGAV-----MPGVATLERLCAVLECS 63 Query: 69 ICQ 71 Sbjct: 64 WMD 66 >gi|38232718|ref|NP_938485.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38198976|emb|CAE48592.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 99 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I+ I + +++ + LA ++P + +R + PS + +I N Sbjct: 23 IYNRIRVLRTERDMSRAQLAELVDVNPQTIGALERG-----DHSPSLDLALRICDVFN 75 >gi|319954805|ref|YP_004166072.1| helix-turn-helix domain protein [Cellulophaga algicola DSM 14237] gi|319423465|gb|ADV50574.1| helix-turn-helix domain protein [Cellulophaga algicola DSM 14237] Length = 66 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + + ++ + LA K G + N+ R R PS E +FKI N Sbjct: 1 MNRIKEVLKDKGISQTWLADKMGKSYNTINEYARN-----KRQPSIEVLFKIAEILNMEA 55 Query: 70 CQLLDLPF 77 +L++ Sbjct: 56 KELIEKRD 63 >gi|295402732|ref|ZP_06812673.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975231|gb|EFG50868.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 115 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 6/63 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H I + I + ++ ++ + A + + P + + G+ + K+ Sbjct: 1 MLEH--IGQRIRTLRKQKGISLNAFAERLNVSPAYLSNLE----TGKTDTIQLSLLEKLQ 54 Query: 63 AAT 65 Sbjct: 55 EEL 57 >gi|283833052|ref|ZP_06352793.1| DNA-binding protein [Citrobacter youngae ATCC 29220] gi|291070671|gb|EFE08780.1| DNA-binding protein [Citrobacter youngae ATCC 29220] Length = 178 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 46/166 (27%), Gaps = 27/166 (16%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + S LA + G+ + +R P+ +++KI N Sbjct: 8 LATTLRTLRHQREWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLNVP 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL---LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + P SDG T +++ + L+ S + G + Sbjct: 63 FSTFISPPESDGTPTFDPQQQAMVVTPLFPWDPQLCFDHFSILLAPGAISESTPHESGVI 122 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 H D+ I + G+ + Sbjct: 123 EH-----------VVVINGLL--------DMCIDERWRTIKAGEGV 149 >gi|295689938|ref|YP_003593631.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431841|gb|ADG11013.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 112 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 7/111 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +++ + +R LT S LA + P + + P+ E++ + Sbjct: 1 MAKV-EEQLGAVVKHHRKRLGLTQSQLAERIDRQPGTVQSLEAGNA------PTFETLVR 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + + + L + + + Sbjct: 54 LASVFDIHLRDLFGIGDYAIEEGRSDPLVSIVQRLSGLSAEELQWVDELLA 104 >gi|223986619|ref|ZP_03636613.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] gi|223961414|gb|EEF65932.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] Length = 400 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I ++ + NLT LA + + + ++ +R +P + K+ + T Sbjct: 7 GKRIAQLRKARNLTQQQLADQLNVTNRAISRWERGEG-----YPEITLLPKLADSLGVTT 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYF 95 ++L ++ ++ Sbjct: 62 DEILGHRTRKQPGMRFAQQPQVIIGI 87 >gi|212640460|ref|YP_002316980.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561940|gb|ACJ34995.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 162 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H I E I R+ H+ T LA++ + + +K + + P +SI + Sbjct: 26 MLQH--IGEQIRRLRNAHDWTQEQLAQRLNVSRSKVSKWENGEV-----LPDLQSIIDMS 78 Query: 63 AATNET 68 + Sbjct: 79 DLFRVS 84 >gi|223939954|ref|ZP_03631821.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223891368|gb|EEF57862.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 203 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ + LA +G+ + ++ +R P+ F+I A ++ Sbjct: 28 RRLKQLRAERGWSLDSLANASGVSRSMISQVERNQAN-----PTLAVAFRIARAFGMSLA 82 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 +L++ P + + + Y + Sbjct: 83 ELVETPEAMSSVLVIRASDHEYHYRSDNDCQI 114 >gi|94314004|ref|YP_587213.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357856|gb|ABF11944.1| transcriptional regulator, XRE family with cupin sensor domain [Cupriavidus metallidurans CH34] Length = 251 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 14/183 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + + + T + LA +G+ T+ ++++R + ++ I Sbjct: 15 TLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQL-----ALGYDNFAAIG 69 Query: 63 AATNETICQLLDLPFSDGRTTEKKE---KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 A + ++ + ++Y S + F + Sbjct: 70 KALQMDMGEMFAGAGETAAPFQGPIVTRANQGVVYTGQSIAYEFLCTEAAGKQMSPTVAT 129 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 V ++A + + + G+ + L GD L R G Sbjct: 130 VHARHITGPEVFASHPGEEFIYVLSGEVEVHFANGEFVRLAR------GDSLYFDARLGH 183 Query: 180 IVA 182 Sbjct: 184 AYI 186 >gi|325697266|gb|EGD39152.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 167 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 36/145 (24%), Gaps = 5/145 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL ++ Y+ S F+ + P Sbjct: 57 TTDYLLLEESDKPEINPVLSEDEKNRYYKEVKSYSFWQVLYIFVSALAIFLFFAGSSFPA 116 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152 + ++ + Sbjct: 117 KFTALVWLSFFLLIASAMAINKALK 141 >gi|294497869|ref|YP_003561569.1| putative transcriptional regulator SinR [Bacillus megaterium QM B1551] gi|294347806|gb|ADE68135.1| probable transcriptional regulator SinR [Bacillus megaterium QM B1551] Length = 111 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 4/89 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + + + LA +A + + + ++ PS + + KI ++ + T Sbjct: 2 IGEKIKNLRLKKGYSITRLAEEANISKSYLSHLEKGLNN----NPSLQMLDKIASSLHTT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 I +L++ S T K + L Sbjct: 58 IDELIEGDISCPALTSKPALNLEWLQLIE 86 >gi|293400018|ref|ZP_06644164.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306418|gb|EFE47661.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 108 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 1/64 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I ++ N+T LA+K G + + + I ++I IL T Sbjct: 4 IGERIRTARKKQNMTLDELAKKVGTSKQTIQRYETGIINNIPSD-KIKAIAAILCTTPAF 62 Query: 69 ICQL 72 + Sbjct: 63 LTGW 66 >gi|257422027|ref|ZP_05599017.1| predicted protein [Enterococcus faecalis X98] gi|257163851|gb|EEU93811.1| predicted protein [Enterococcus faecalis X98] gi|315157055|gb|EFU01072.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 174 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 5/102 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K I I + + N+T LA + G+ P++ + PS I +I Sbjct: 7 NKIIATNIKKYLKESNITQKKLAEEIGISPSTMSDYMNLRSN-----PSHGVIQRIADYF 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + + + + L Sbjct: 62 KIKKSDIDTTYKENSDPSSLESIYNILEPERQKIVYETAKEQ 103 >gi|225026540|ref|ZP_03715732.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353] gi|224956154|gb|EEG37363.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353] Length = 177 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I E + LA +G++ + K + R P E + KI AA Sbjct: 2 VGKKIRAYREFRGFSQIQLAELSGINVGTIRKYELGI-----RNPKPEQLEKIAAALG 54 >gi|254419025|ref|ZP_05032749.1| hypothetical protein BBAL3_1335 [Brevundimonas sp. BAL3] gi|196185202|gb|EDX80178.1| hypothetical protein BBAL3_1335 [Brevundimonas sp. BAL3] Length = 194 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 63/211 (29%), Gaps = 34/211 (16%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + EA+ + R L+ + + + + + G R + L AT Sbjct: 13 LGEALAALRRRRGLSQAEAGARLDMTSQGWGLYESGRRPGLFRPDVQRRLTGALDAT--- 69 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 E L+ + +G+ G ++ G P + H Sbjct: 70 -----------------PEALALLVSGAQTPHVDPAATGLESRGRGFD--GPPPVVVKH- 109 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 K +D ++ P G IL + G +I+ + GD+ ++ Sbjct: 110 -----------LKVRDDALSPWAEPGVILEYQPDLWPRGGQGCVIEMKDGDLRPRLFDRS 158 Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + + + ++ + I+ ++ Sbjct: 159 EDDRLHVRGAGALDRAEVIDRQSVARISAVI 189 >gi|261403945|ref|YP_003240186.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280408|gb|ACX62379.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 68 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +K++ + I + LT LA ++G+ +R R + + +I Sbjct: 3 NKQLAQRIRAFRKLKGLTQQELAERSGISLAVLGAIERGN-----RRAEEQMLAQIADVL 57 Query: 66 NETICQ 71 T+ + Sbjct: 58 EITLQE 63 >gi|182438465|ref|YP_001826184.1| hypothetical protein SGR_4672 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466981|dbj|BAG21501.1| hypothetical protein containing a helix-turn-helix DNA-binding domain [Streptomyces griseus subsp. griseus NBRC 13350] Length = 708 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + R ++ ++ + LA++ GL + + P E+I K Sbjct: 2 MTLDTGMDFGPWLARQLKQSGMSQADLAQRIGLTRAAVSAWITGRAT-----PREETINK 56 Query: 61 ILAATNET 68 I A Sbjct: 57 IAEALGTD 64 >gi|160942938|ref|ZP_02090177.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium prausnitzii M21/2] gi|158445839|gb|EDP22842.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium prausnitzii M21/2] Length = 85 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++T LA AG+ + N ++ SI KIL T + + Sbjct: 27 LKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCR--SICKILDKTLDELFW 83 >gi|159898022|ref|YP_001544269.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891061|gb|ABX04141.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 71 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 5/73 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + LA+ G+ + N + + PS FKI I Sbjct: 3 NRLRVLRAEREWSQADLAQALGVSRQTINALETGKYD-----PSLPLAFKIADLFELAIE 57 Query: 71 QLLDLPFSDGRTT 83 Q+ + P +D T Sbjct: 58 QIFERPSADQATE 70 >gi|27381826|ref|NP_773355.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354995|dbj|BAC51980.1| blr6715 [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 +++ E + + +R L+ +A K GL ++ +R R SI Sbjct: 24 QRLGETVRLLRQRAGLSIQDVANKTGLSNGMISQLERARAMPSIRTLRLLSIA 76 >gi|148263053|ref|YP_001229759.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396553|gb|ABQ25186.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 181 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 14/137 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + R+ ++LT LA +A L ++ + PS ++ I+ Sbjct: 2 KIGERLKRLRMINSLTQEELASRADLTKGYISQLENDAT-----SPSIATLKDIIDVFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEI--------PLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++ + + K + + P D + Sbjct: 57 SMQEFFSEVTDEDIVFGKDARVQATDDDDKIKVELLVPGAQNREMDPVLVTLDPGEEMDE 116 Query: 120 VPEIRSPHNGIYAIQTQ 136 P Y + + Sbjct: 117 QPF-HEGEEFGYVLLGK 132 >gi|331652877|ref|ZP_08353882.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli M718] gi|331048975|gb|EGI21047.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli M718] Length = 94 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 69 Query: 65 TNETI 69 ++ Sbjct: 70 LELSM 74 >gi|331647041|ref|ZP_08348135.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli M605] gi|331043824|gb|EGI15960.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli M605] Length = 94 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 69 Query: 65 TNETI 69 ++ Sbjct: 70 LELSM 74 >gi|328882155|emb|CCA55394.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712] Length = 254 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/139 (9%), Positives = 35/139 (25%), Gaps = 12/139 (8%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + + LT + LA +AG+ + ++ + G P+ + ++ A + + Sbjct: 42 LRTKLGLTQTALAERAGMKQPAISRIEGGGTV-----PTLPLLRRLADALDADLNISFTP 96 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ- 134 + E L + + + G + Sbjct: 97 RNTPAEAEVPAEVARG-LTVAEAAEESVEPEITEAVEQ--DEPLFRSTMAWLEGSGQVDM 153 Query: 135 ---TQDTRHKTQDTSMLPL 150 + + P Sbjct: 154 GSLPEACLVYGAGELVAPT 172 >gi|325693715|gb|EGD35634.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332364198|gb|EGJ41974.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 205 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA K G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKVRGISQEGLAEKLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82 >gi|320195544|gb|EFW70169.1| HipB protein [Escherichia coli WV_060327] Length = 88 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 63 Query: 65 TNETI 69 ++ Sbjct: 64 LELSM 68 >gi|293414862|ref|ZP_06657505.1| DNA-binding transcriptional regulator HipB [Escherichia coli B185] gi|291432510|gb|EFF05489.1| DNA-binding transcriptional regulator HipB [Escherichia coli B185] Length = 94 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 69 Query: 65 TNETI 69 ++ Sbjct: 70 LELSM 74 >gi|281178626|dbj|BAI54956.1| transcriptional repressor [Escherichia coli SE15] gi|330911363|gb|EGH39873.1| HipB protein [Escherichia coli AA86] Length = 88 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 63 Query: 65 TNETI 69 ++ Sbjct: 64 LELSM 68 >gi|269216039|ref|ZP_06159893.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130298|gb|EEZ61376.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 139 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ ++ LA + G+ S +K + G P + K+ + Sbjct: 3 LADKIIMLRKKAGMSQEQLAERLGVSRQSVSKWE-----GSQSMPDMDKAVKLADLFGLS 57 >gi|227886098|ref|ZP_04003903.1| DNA-binding transcriptional regulator HipB [Escherichia coli 83972] gi|300978872|ref|ZP_07174391.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 200-1] gi|300989682|ref|ZP_07178955.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 45-1] gi|301050227|ref|ZP_07197119.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 185-1] gi|306813489|ref|ZP_07447679.1| DNA-binding transcriptional regulator HipB [Escherichia coli NC101] gi|227837027|gb|EEJ47493.1| DNA-binding transcriptional regulator HipB [Escherichia coli 83972] gi|300298052|gb|EFJ54437.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 185-1] gi|300308091|gb|EFJ62611.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 200-1] gi|300407298|gb|EFJ90836.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 45-1] gi|305853234|gb|EFM53674.1| DNA-binding transcriptional regulator HipB [Escherichia coli NC101] gi|307553520|gb|ADN46295.1| HTH-type transcriptional regulator HipB [Escherichia coli ABU 83972] gi|312946096|gb|ADR26923.1| DNA-binding transcriptional regulator HipB [Escherichia coli O83:H1 str. NRG 857C] gi|315291825|gb|EFU51177.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 153-1] gi|323187177|gb|EFZ72491.1| HTH-type transcriptional regulator hipB [Escherichia coli RN587/1] gi|324006881|gb|EGB76100.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 57-2] gi|324014833|gb|EGB84052.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 60-1] Length = 88 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 63 Query: 65 TNETI 69 ++ Sbjct: 64 LELSM 68 >gi|227507976|ref|ZP_03938025.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192550|gb|EEI72617.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 196 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 5/114 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + ++++L + LA K + + + + P +++ +I + Sbjct: 4 KLIENLKFFRKQNHLNQNQLAIKLNVSRPTISSWETGRTT-----PDIDTLVRIASFYQV 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + QLL K +K I + F + + + Sbjct: 59 PVDQLLFTRSHSKGNINKSQKHILGILLMILIIERFTVDAPPAARGWIDILALI 112 >gi|168187848|ref|ZP_02622483.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] gi|169294305|gb|EDS76438.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] Length = 155 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + + LT LA K + + +K ++ R P+ E + KI A + Sbjct: 2 NLGEKIKKYRKLFKLTQEELAAKLEISKHTLSKYEQNQ-----RKPNIEMLNKIAKALDV 56 Query: 68 TICQLLDLPF 77 T+ L++ Sbjct: 57 TVNDLMEFEE 66 >gi|167817933|ref|ZP_02449613.1| gp48 [Burkholderia pseudomallei 91] Length = 105 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI + LT + +A + G ++ ++ + + PS ++ K AA Sbjct: 42 LRAILAARQEAGLTQAQVAERMGTTASAVSRLEASLTSEK-HSPSFATLRKYAAACG 97 >gi|218902221|ref|YP_002450055.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] gi|218539083|gb|ACK91481.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] Length = 149 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + S LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|148544368|ref|YP_001271738.1| helix-turn-helix domain-containing protein [Lactobacillus reuteri DSM 20016] gi|184153734|ref|YP_001842075.1| hypothetical protein LAR_1079 [Lactobacillus reuteri JCM 1112] gi|148531402|gb|ABQ83401.1| helix-turn-helix domain protein [Lactobacillus reuteri DSM 20016] gi|183225078|dbj|BAG25595.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] Length = 145 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 21/41 (51%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + E I ++ E + + LAR+ ++ T+ NK ++ + Sbjct: 4 DILREKIIKLREERGWSQAELARRINMNNTALNKVEKGTRK 44 >gi|26247797|ref|NP_753837.1| DNA-binding transcriptional regulator HipB [Escherichia coli CFT073] gi|110641680|ref|YP_669410.1| DNA-binding transcriptional regulator HipB [Escherichia coli 536] gi|191174143|ref|ZP_03035656.1| transcriptional regulator HipB [Escherichia coli F11] gi|26108199|gb|AAN80399.1|AE016760_258 Protein hipB [Escherichia coli CFT073] gi|110343272|gb|ABG69509.1| HTH-type transcriptional regulator HipB [Escherichia coli 536] gi|190905561|gb|EDV65187.1| transcriptional regulator HipB [Escherichia coli F11] gi|222033258|emb|CAP75998.1| HTH-type transcriptional regulator hipB [Escherichia coli LF82] Length = 94 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 69 Query: 65 TNETI 69 ++ Sbjct: 70 LELSM 74 >gi|323968854|gb|EGB64190.1| DNA-cytosine methyltransferase [Escherichia coli TA007] Length = 272 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 5/137 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDP---TSFNKSKRFGIEGRNRWPSTESIFKILA 63 I I ER ++T A GL + + +R + +++ Sbjct: 3 DNIAATIKEKRERLHMTQKEFADALGLSKYGDRTIRRWERGET--KPTGAELKAVIDFPD 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + D + + N P+ Sbjct: 61 TPPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHANYGDFPDG 120 Query: 124 RSPHNGIYAIQTQDTRH 140 I + Sbjct: 121 DITKIDEKDIPDHEILV 137 >gi|322830833|ref|YP_004210860.1| mobile mystery protein A [Rahnella sp. Y9602] gi|321166034|gb|ADW71733.1| mobile mystery protein A [Rahnella sp. Y9602] Length = 155 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 3/105 (2%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + ++ LA + GL + + ++ IEG + ++ KI + + Sbjct: 32 IQLLRSALGMSTRSLAERCGLSQSRISLIEKGEIEG---SLTLNTLEKIAEGLDCELVYF 88 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 L ++++ F + T + + Sbjct: 89 LQPKQGRTLQELREQQAGKKAKFLNQYTEIHMSLEQQSTSSAFQE 133 >gi|317501379|ref|ZP_07959580.1| hypothetical protein HMPREF1026_01524 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897219|gb|EFV19289.1| hypothetical protein HMPREF1026_01524 [Lachnospiraceae bacterium 8_1_57FAA] Length = 84 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQ 71 I + + N+T + LA++ G+ + + G R S E + +I + + Sbjct: 4 IKELRKEKNITVAELAKELGISQSMLTNYENG--NGTPRDESIWEKLSQIFGVSKSHVMG 61 Query: 72 LLDLPF 77 L Sbjct: 62 LTTDIE 67 >gi|296129256|ref|YP_003636506.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296021071|gb|ADG74307.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 75 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 8 KIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ I + +T + LAR G+ + ++ PS E+ F+I A Sbjct: 7 RVTNRIRALRTERGDMTQAELARHLGVTRQTVIAIEQGRY-----SPSLETAFQIARALG 61 Query: 67 ETICQLLDLPF 77 + ++ D P Sbjct: 62 VPLDEVFDYPD 72 >gi|293374855|ref|ZP_06621157.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325840161|ref|ZP_08166969.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|292646524|gb|EFF64532.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325490400|gb|EGC92723.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 356 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + ++ +T LA G+ + +K + +P + I N Sbjct: 4 NIGKVIYELRKKAKVTQEQLANAVGVSVPAVSKWENNTS-----YPDITLLPAIARYFNT 58 Query: 68 TICQLLDLPF 77 +I +L+ Sbjct: 59 SIDELMSYDM 68 >gi|251778963|ref|ZP_04821883.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083278|gb|EES49168.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 148 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I R ER L+ LA G+ S ++ + R PS + + I + + Sbjct: 3 IGANIKRERERKGLSRKQLADSLGVTDVSISRYEN-----EKRTPSIKILESISLRLDVS 57 Query: 69 ICQLLDLPF 77 I L Sbjct: 58 INDLTTEKE 66 >gi|239939646|ref|ZP_04691583.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239986130|ref|ZP_04706794.1| DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 182 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 10/101 (9%), Positives = 34/101 (33%), Gaps = 5/101 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + H + LAR++G+ ++ ++ +R + P+ + ++ Sbjct: 4 RLAVRLADLRTEHGWSLDELARRSGVSRSTLSRLERCEV-----SPTATLLGRLCTVYGR 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 T+ +LL ++ ++ Sbjct: 59 TMSRLLMEVEAEPPPLVPAARQTVWRDEAAGFVRRSVSPPH 99 >gi|221194780|ref|ZP_03567837.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221185684|gb|EEE18074.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 364 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 9/81 (11%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +KI + +R+ + LAR+ + S +K + P + I + Sbjct: 1 MLLSEKIMS----LRKRNGWSQEELARQLNVSRQSVSKWESMAA-----MPDIQKIMAMS 51 Query: 63 AATNETICQLLDLPFSDGRTT 83 + LL D T Sbjct: 52 ELFGVSTDYLLKDEMEDLPAT 72 >gi|169830949|ref|YP_001716931.1| XRE family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169637793|gb|ACA59299.1| transcriptional regulator, XRE family [Candidatus Desulforudis audaxviator MP104C] Length = 83 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I ++ + R LT + LAR+ G+ T++ ++ + PS + +I NE Sbjct: 3 QIRVSLRSVRLRAGLTQAELARRVGISRTAYTNIEKGH-----KHPSLVTALRIARVLNE 57 Query: 68 TICQ 71 + Sbjct: 58 HVED 61 >gi|196037631|ref|ZP_03104942.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228913713|ref|ZP_04077339.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228944755|ref|ZP_04107119.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090075|ref|ZP_04221326.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|196031873|gb|EDX70469.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228693305|gb|EEL47015.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|228814927|gb|EEM61184.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228845905|gb|EEM90930.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 149 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + S LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|70725257|ref|YP_252171.1| hypothetical protein SH0256 [Staphylococcus haemolyticus JCSC1435] gi|68445981|dbj|BAE03565.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 134 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K + E I + + ++ LA K + S + +R P ++ ++ Sbjct: 1 MKTKSVGERIRNLRKSKKMSQEKLAEKLNVSRHSISNWERDVS-----SPDIHALLEMTE 55 Query: 64 ATNET 68 + Sbjct: 56 LFGVS 60 >gi|32470131|ref|NP_863573.1| DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae] gi|462656|sp|P34879|MTS2_SHISO RecName: Full=Modification methylase SsoII; Short=M.SsoII; AltName: Full=Cytosine-specific methyltransferase SsoII gi|11559818|gb|AAG38101.1|AF300473_2 DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae] gi|294244|gb|AAA98279.1| C5-cytosine methylase [Plasmid P4] Length = 379 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 5/137 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDP---TSFNKSKRFGIEGRNRWPSTESIFKILA 63 I I ER ++T A GL + + +R + +++ Sbjct: 3 DNIAATIKEKRERLHMTQKEFADALGLSKYGDRTIRRWERGET--KPTGAELKAVIDFPD 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + D + + N P+ Sbjct: 61 TPPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHANYGDFPDG 120 Query: 124 RSPHNGIYAIQTQDTRH 140 I + Sbjct: 121 DITKIDEKDIPDHEILV 137 >gi|229191715|ref|ZP_04318693.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] gi|228591761|gb|EEK49602.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] Length = 277 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + R+ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|118593092|ref|ZP_01550479.1| Transcriptional repressor [Stappia aggregata IAM 12614] gi|118434399|gb|EAV41053.1| Transcriptional repressor [Stappia aggregata IAM 12614] Length = 313 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 18/170 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + E+ N + LA+ + ++ + E P E++ + ++ + Sbjct: 3 IKELREKMNWSQGELAKLLSRTQQTVSRWESGATE-----PGIEALRDMAMIFGCSVDDI 57 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY- 131 L L + K I G + + ++ + P S + I Sbjct: 58 LGLEG--ISPSNKLTVSISHADALAEEFDGCWGNLGLKMRDRKHIKWYPISASQRDEIRD 115 Query: 132 -----AIQTQDTRHKTQDTSMLPLYRK-----GDILILNSAIQVNCGDRL 171 +QTQ + L L+ + D + Sbjct: 116 ALNGEILQTQVKWFTVTTLNNRALIVNPKAMRRIWLLAEEHDEPENRDFV 165 >gi|2897106|gb|AAC03457.1| repressor [Streptococcus phage TP-J34] Length = 121 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 6/97 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +K+ I+ + ++ LA+ G ++ +K + P+ I K+ A Sbjct: 4 NKQRGSRIESLRASKGISQLELAKMLGYKSDSTISKWESGASI-----PTGTKIVKLAQA 58 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 T +L S+ ++ + Sbjct: 59 LGTTTDYILFGDNSENNDGQQIISTDIDEIIENAMMF 95 >gi|303231737|ref|ZP_07318460.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6] gi|302513686|gb|EFL55705.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6] Length = 297 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 43/159 (27%), Gaps = 9/159 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ- 71 I + + + L+ G+ + +R + P+ E++ KI N T+ + Sbjct: 3 IQNLRKLYKLSQGDFGALLGMTKGQISSYEREVSQ-----PTLETLNKIAQYFNCTLEEL 57 Query: 72 -LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRSPHNG 129 + ++E L G+ F + + R Sbjct: 58 TETPIREEFYFKWLLDQEEHTLFVTQELGNQSKFKAQAGVIEIQSDEYITYGFARGLRED 117 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 I + + + + ++++ Sbjct: 118 EAPIFAANFLL-LEGDKNNSIINHFEKVVVDLEEVERKN 155 >gi|301386540|ref|ZP_07234958.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato Max13] gi|330879318|gb|EGH13467.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330941035|gb|EGH43955.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 127 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 5/99 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + L+ + LA G D ++ +R P E + +I N Sbjct: 18 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGST-----LPGIEQLIRIATVFNVA 72 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 +LL RT ++ S + + Sbjct: 73 PGELLPGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEM 111 >gi|296168067|ref|ZP_06850133.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896874|gb|EFG76502.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 471 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + ++ L G P Sbjct: 61 ATFFASQDDTRLVAELREVTMDRDLDIDVDPGEVAELVGSHPA 103 >gi|284097788|ref|ZP_06385777.1| lambda repressor [Candidatus Poribacteria sp. WGA-A3] gi|283830688|gb|EFC34809.1| lambda repressor [Candidatus Poribacteria sp. WGA-A3] Length = 128 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + E I ++ L+ + +A+ + ++ N+ ++ G ++ E F Sbjct: 1 MKTLT-----ERIQTARKQAGLSQADVAKALRISASAVNQWEQ----GFSKNIKLEHFFA 51 Query: 61 ILAATNETICQ 71 + + + Sbjct: 52 LASLLRQDPQW 62 >gi|281492863|ref|YP_003354843.1| phage Cro/CI transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281376515|gb|ADA66001.1| Phage protein, transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 203 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 2/102 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAATNE 67 E I ++ ++ LA GL + + ++ S S + Sbjct: 1 MERIKIARQKKGISQKELADLLGLTQQAVSYYEKGSRIPDEHILSVISDILNVPTEYLTG 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + T E+ + S + D Sbjct: 61 ETDDPEGWDLWEDATGYTPEQIKKEIKRMKSANHIVGDDKNL 102 >gi|295677629|ref|YP_003606153.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] gi|295437472|gb|ADG16642.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 235 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 50/194 (25%), Gaps = 10/194 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 34 VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 88 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L ++G E+ ++ S Sbjct: 89 VAAFLRRHATNGFEHLPAERSARVVSANGRYSVRPLYPDDESI-AAEFHELRIAPLHTEA 147 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG--DIVAKV-- 184 GI D ++ L+ V D+ G + A Sbjct: 148 GIRRAPGTTVNLVVSDGTLEVSVHDQRQLLATGDAIVFDADQPHSLRNPGDTEARAFRVT 207 Query: 185 LISRRGRSIDLMSL 198 L + ++ Sbjct: 208 LRAETPPRWEVRPA 221 >gi|126175750|ref|YP_001051899.1| putative prophage repressor [Shewanella baltica OS155] gi|125998955|gb|ABN63030.1| putative prophage repressor [Shewanella baltica OS155] Length = 135 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 12/123 (9%) Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDI 156 P P S + + + SM GDI Sbjct: 1 MRVIPIPARAGITGFESPAAEYTQLGLSLDELLINHPSSTFLAFAEGDSMQGKGIFDGDI 60 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWI 215 LI++ GD ++ + + K++ R + L S N + + + Sbjct: 61 LIIDRHETARYGDVIVASLNR-EFICKIIDI--PRRLLLSS-NPQHQPVIIHEYDEFSIE 116 Query: 216 ARI 218 I Sbjct: 117 GVI 119 >gi|116049838|ref|YP_791355.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585059|gb|ABJ11074.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 183 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 5/117 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + + LT + LA + + ++ +R P+ + ++ Sbjct: 5 ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLAGGLG 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + +LL + ++ ++ + +G + V +P Sbjct: 60 VALSELLGDAQAPAEPLCRRAQQEVWEDPASGYRRRQVGARDPRSGCEMVEVEIPAN 116 >gi|47565539|ref|ZP_00236580.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47557529|gb|EAL15856.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 137 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 5/109 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + ++ E + +A+K G+ + K + +P +++ + N Sbjct: 2 NLGELLKKLRESKGFSQGDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 T+ +L+ + ++ G + + Sbjct: 57 TLDELIKGNQDFKKKIHSDAEDEDFEKGNEFGFYIGCGLLILSAFVDYE 105 >gi|319652413|ref|ZP_08006529.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2] gi|317395875|gb|EFV76597.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2] Length = 185 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 36/195 (18%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + + + E L+ +A G+ T + +R P+ +I+KI Sbjct: 5 HLILAKNLKAFRENKKLSLEKVAELTGVSKTMIGQIERGES-----SPTITTIWKIANGL 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + L++ P D + KKE + + + Sbjct: 60 KISFTSLINHPQPDTQVVLKKEIQTLSEDHGKYR--------------VYPYFPFENDKR 105 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 I S P + LI+ V G+ + + + Sbjct: 106 FEVYTVEIDKGGYL------SAEPHIEGTEELIV-----VFDGEITI-RVNNDEYTL--- 150 Query: 186 ISRRGRSIDLMSLNC 200 G SI + Sbjct: 151 --ESGDSIRFKADRP 163 >gi|307825930|ref|ZP_07656145.1| transcriptional regulator, XRE family [Methylobacter tundripaludum SV96] gi|307733049|gb|EFO03911.1| transcriptional regulator, XRE family [Methylobacter tundripaludum SV96] Length = 102 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I LT + +A + G ++ + + + G+ PS +++ K AA Sbjct: 38 ILDEILSARREAGLTQAQVADRMGTKASAVARLESALVSGK-HSPSIDTLRKYAAAVG 94 >gi|291485970|dbj|BAI87045.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 152 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I +R + + LA ++G+ + +K +R PS + + K+ A Sbjct: 2 IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHT----NPSVQFLKKVSATLEVE 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + +L D + +E ++ + G +F Sbjct: 58 LTELFD-AETMMYEKISGGEEEWRVHLVQAVQAGMEKEELF 97 >gi|266622984|ref|ZP_06115919.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288865257|gb|EFC97555.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 365 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 50/166 (30%), Gaps = 10/166 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + +R +T + LA + G+ + +K + P ++ + + Sbjct: 33 GERITYLRKRKKMTQAQLAEQLGISAQAVSKWESGLS-----CPDIMTLVPLSQVLGVST 87 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSPHN 128 +LL + G + + S + +S G + + P Sbjct: 88 DELLGVQGGMGAGGFEASGTMEAGEHAESNTEPITESNAEAKGTADGSPIREPNRFKSLL 147 Query: 129 GIYAIQTQDTRHK---TQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + A + + + + + G L + G+ + Sbjct: 148 VVPAAEDGTRAIREFTVSAGACAAVIQYGSDFGLETEG-YQDGEII 192 >gi|253576835|ref|ZP_04854160.1| helix-turn-helix domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843702|gb|EES71725.1| helix-turn-helix domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 69 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + T LA K+G+ +R R + + KI Sbjct: 5 QLAQRIRAFRKLKGFTQQELAEKSGVSLALLGAVERGN-----RRADDQMLTKIAQCLGI 59 Query: 68 TICQ 71 ++ + Sbjct: 60 SLAE 63 >gi|225569728|ref|ZP_03778753.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] gi|225161198|gb|EEG73817.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] Length = 114 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 5/81 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + ++ NL+ LA + K + E P+ E++ + Sbjct: 2 NIVKNLKKLRTERNLSQQQLADMLHTTQQNIYKYENGISE-----PNLETLKNMADHFQT 56 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 +I L+ + E Sbjct: 57 SIDYLVGYTSIRHKIEPVSEY 77 >gi|229816663|ref|ZP_04446952.1| hypothetical protein COLINT_03712 [Collinsella intestinalis DSM 13280] gi|229807791|gb|EEP43604.1| hypothetical protein COLINT_03712 [Collinsella intestinalis DSM 13280] Length = 90 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + +++ ++I + LT LA + G+ + + + PS ++ KI Sbjct: 26 TEREVMKSIVKARIAAGLTQKELADRCGMKAANLCRLENGNGN-----PSVATLSKIAHG 80 Query: 65 TN 66 Sbjct: 81 LG 82 >gi|321312988|ref|YP_004205275.1| transcriptional regulator [Bacillus subtilis BSn5] gi|320019262|gb|ADV94248.1| transcriptional regulator [Bacillus subtilis BSn5] Length = 152 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I +R + + LA ++G+ + +K +R PS + + K+ A Sbjct: 2 IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHT----NPSVQFLKKVSATLEVE 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + +L D + +E ++ + G +F Sbjct: 58 LTELFD-AETMMYEKISGGEEEWRVHLVQAVQAGMEKEELF 97 >gi|295106173|emb|CBL03716.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 384 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 6/106 (5%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + + + +T GLA + G+ + +K + +P + + + + + L+ Sbjct: 10 LRQHYGVTQEGLAEQLGVSRQTVSKWEAGTN-----YPEMDKLLALCDLFHTNLDDLMRG 64 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGV 120 + + + + S G F + V V Sbjct: 65 SVHVANKGDTERYDHHMNRHSLSMVAGVAFILAGVGVQSVIEAVDV 110 >gi|225851327|ref|YP_002731561.1| transcriptional regulator, xre family [Persephonella marina EX-H1] gi|225645748|gb|ACO03934.1| transcriptional regulator, xre family [Persephonella marina EX-H1] Length = 159 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 5/81 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + I ++ + L+ A K G + + R P ++ I Sbjct: 2 ENIGQRIKQLRKMLGLSQREFAEKIGKSLRAVQNWEYEQ-----RTPDESTLRLISQTFG 56 Query: 67 ETICQLLDLPFSDGRTTEKKE 87 + L + K Sbjct: 57 VNLDWLKTGEGEMWVKDQDKS 77 >gi|170743046|ref|YP_001771701.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197320|gb|ACA19267.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 206 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 7/136 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I R+ + +NL+ S LA ++G+ + ++ +R P+ +I+++ A + Sbjct: 23 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETN-----PTLATIWRLSQALDV 77 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + + + EK + + G +G T + Sbjct: 78 S-IERVLATGDEEPFIEKSSRADTPILVSEDGKVRLAITGWIKTVEWLQWYDLTAEPGGE 136 Query: 128 NGIYA-IQTQDTRHKT 142 A + Sbjct: 137 LDSDAHQRGSVECLSV 152 >gi|160902864|ref|YP_001568445.1| XRE family transcriptional regulator [Petrotoga mobilis SJ95] gi|160360508|gb|ABX32122.1| transcriptional regulator, XRE family [Petrotoga mobilis SJ95] Length = 178 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + N+T LA ++ L ++ +R P+ E++ IL A Sbjct: 2 QIGEKIKSLRIMRNMTQEELATRSDLTRGFISQVERDLA-----SPTVENLEMILRALGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + + + KE IP+ P + P Sbjct: 57 DLKDFFSNLENKEKIVFTKEDRIPIYDSPTGVKEELLLTTSEP 99 >gi|126652117|ref|ZP_01724299.1| DNA-binding protein [Bacillus sp. B14905] gi|126591025|gb|EAZ85136.1| DNA-binding protein [Bacillus sp. B14905] Length = 181 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 43/137 (31%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + +++ + +LT LA AG+ P+ ++ +R PS +++ + + Sbjct: 5 DIGKKVEKYRKMKDLTNRELAALAGITPSMLSQIERGLAN-----PSIQTLKVLAKTLDV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + K ++ S D + VP S Sbjct: 60 PTFTFFMEETNTEALIVRSNKRKKMIVDNLSYELLSPDFTGNLASAI---LTVPPYTSSS 116 Query: 128 NGIYAIQTQDTRHKTQD 144 + + ++ + Sbjct: 117 EKLLDHRGEEIAVIIEG 133 >gi|114763188|ref|ZP_01442614.1| acetylornithine deacetylase [Pelagibaca bermudensis HTCC2601] gi|114544241|gb|EAU47250.1| acetylornithine deacetylase [Roseovarius sp. HTCC2601] Length = 88 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + AI R+ + + + LAR AG D ++ + E + Sbjct: 12 LGHAIRRLRKAKGWSQADLARLAGTDARQVSRIETAAHEPK 52 >gi|49479808|ref|YP_035283.1| DNA-binding protein transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331364|gb|AAT62010.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 149 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + S LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLSSDEELTQKVIEDSKQLAYPKW 84 >gi|78212416|ref|YP_381195.1| peptidase S26 family protein [Synechococcus sp. CC9605] gi|78196875|gb|ABB34640.1| possible peptidase S26 family protein [Synechococcus sp. CC9605] Length = 110 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 5/72 (6%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGD--IVAKVLISRR 189 + + + SM P GD +++ G ++ + K L Sbjct: 6 GRRLLLRIEGRSMQPTLEPGDRVLVRRLGRKTAPCLGSVVVTWHPQRSKLRLIKRLNRLD 65 Query: 190 GRSIDLMSLNCC 201 R L+ N Sbjct: 66 SRGFWLLGDNPS 77 >gi|26988980|ref|NP_744405.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983798|gb|AAN67869.1|AE016418_9 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 104 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 5/74 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + A+ R + LT + LA + G DP + ++ + PS ++I Sbjct: 1 MTRSALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYT-----PSIDAIMAFAQ 55 Query: 64 ATNETICQLLDLPF 77 P Sbjct: 56 VLGVKTKDFFAEPD 69 >gi|25011386|ref|NP_735781.1| hypothetical protein gbs1344 [Streptococcus agalactiae NEM316] gi|24412924|emb|CAD47003.1| unknown [Streptococcus agalactiae NEM316] Length = 158 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKIIGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTT 83 ++ Sbjct: 57 YVDIVGEDKMMTPVE 71 >gi|16080491|ref|NP_391318.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221311387|ref|ZP_03593234.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315714|ref|ZP_03597519.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320629|ref|ZP_03601923.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324914|ref|ZP_03606208.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|81556692|sp|P71049|SLRR_BACSU RecName: Full=HTH-type transcriptional regulator slrR gi|1495278|emb|CAA96488.1| hypothetical protein [Bacillus subtilis] gi|1762125|gb|AAB39888.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|1945689|emb|CAB08022.1| hypothetical protein [Bacillus subtilis] gi|2635951|emb|CAB15443.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 152 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I +R + + LA ++G+ + +K +R PS + + K+ A Sbjct: 2 IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHT----NPSVQFLKKVSATLEVE 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + +L D + +E ++ + G +F Sbjct: 58 LTELFD-AETMMYEKISGGEEEWRVHLVQAVQAGMEKEELF 97 >gi|218892158|ref|YP_002441025.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234978|ref|ZP_04928301.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719] gi|126166909|gb|EAZ52420.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719] gi|218772384|emb|CAW28166.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 183 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/116 (10%), Positives = 36/116 (31%), Gaps = 5/116 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + + LT + LA + + ++ +R P+ + ++ Sbjct: 5 ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLAGGLG 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + +LL ++ ++ + +G + V +P Sbjct: 60 VALSELLGDAQVPAEPLCRRAQQEVWEDPVSGYRRRQVGARDPRSGCEMVEVEIPA 115 >gi|327459012|gb|EGF05360.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 205 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82 >gi|322418901|ref|YP_004198124.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320125288|gb|ADW12848.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 82 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ ++ E ++ + LAR AG+ P + ++ +R E+ KIL A + Sbjct: 19 IMNSVKKLREERLMSKAELARLAGVSPITIDRIERGE------DCRMETKRKILLALGFS 72 Query: 69 ICQLLDLPF 77 + + Sbjct: 73 LSDKNKVFQ 81 >gi|309792138|ref|ZP_07686610.1| peptidase S26B, signal peptidase [Oscillochloris trichoides DG6] gi|308225679|gb|EFO79435.1| peptidase S26B, signal peptidase [Oscillochloris trichoides DG6] Length = 590 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 2/92 (2%) Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + T SM P+Y +GD++++ + GD + + V +I R Sbjct: 37 PLQLGGKVTMIIVNGNSMEPVYYRGDLVLIRATSSYQIGDIVTYRHPQIGPVIHRIIGRE 96 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 G + + D + I R W Sbjct: 97 GERWIFQGDHNEFID-PYRPVDADLIGRA-WV 126 >gi|302390193|ref|YP_003826014.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302200821|gb|ADL08391.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 121 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 5/90 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + I ++ + +LT L +A L + + +R ++ PS +++ KI A N Sbjct: 8 KNIGKRIRQIRLQRDLTQEELGERANLHYSYIGQVERG-----DKLPSLKTLSKIAKALN 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 ++ +L+ P + + + L+ Sbjct: 63 VSLDYVLEDPATYEAQPDTEAAINELVTMV 92 >gi|298292090|ref|YP_003694029.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296928601|gb|ADH89410.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 206 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 44/113 (38%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I R+ + +NL+ S L+ ++G+ + ++ +R P+ +++++ A + Sbjct: 23 QLGRTIQRLRKAYNLSLSELSEQSGVAKSIISQIERNETN-----PTLATVWRLSQALDV 77 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +I + + + + P+L G +G T Sbjct: 78 SIDRFMAATDDEPFVEHLTRADTPIL-LSEDGKCRLTITGWIKTVEWLQWFDF 129 >gi|254555453|ref|YP_003061870.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254044380|gb|ACT61173.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 180 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + + LT L + L ++ + PS E+ F IL Sbjct: 2 DIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQS-----SPSMETFFAILEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + + Sbjct: 57 APADFFAAEQPTHKVVYHPADQTTY 81 >gi|300766976|ref|ZP_07076889.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179456|ref|YP_003923584.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495514|gb|EFK30669.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044947|gb|ADN97490.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 180 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + + LT L + L ++ + PS E+ F IL Sbjct: 2 DIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQS-----SPSMETFFAILEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + + Sbjct: 57 APADFFAAEQPTHKVVYHPADQTTY 81 >gi|225575462|ref|ZP_03784072.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] gi|225037314|gb|EEG47560.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] Length = 145 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 17/148 (11%), Positives = 40/148 (27%), Gaps = 12/148 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA----ATN 66 E I + + + L+ LA K + + ++ + + K+ Sbjct: 5 EVISELRKEYGLSQDELAEKVYVTRQAVSRWETGETIPNIETLKL--LSKLFDVSINTLL 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + +L+ KE ++ + G F NK + + Sbjct: 63 GSPRKLICQCCGMPLDDSITSKEENGMFNEDYCKWCY-HEGKFRYSNKEDLISYCSEHMA 121 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 + Q + +LP + Sbjct: 122 DENWSSEQVRTYM-----EKLLPTLKHW 144 >gi|28377241|ref|NP_784133.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270072|emb|CAD62972.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 180 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + + LT L + L ++ + PS E+ F IL Sbjct: 2 DIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQS-----SPSMETFFAILEVLGC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + + Sbjct: 57 APADFFAAEQPTHKVVYHPADQTTY 81 >gi|322375072|ref|ZP_08049586.1| putative helix-turn-helix protein [Streptococcus sp. C300] gi|321280572|gb|EFX57611.1| putative helix-turn-helix protein [Streptococcus sp. C300] Length = 165 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + + + LA + + S +K + + P E I ++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T LL + +T +E Y+ + S G + Sbjct: 57 TTDYLLLDENFEKGSTAVILEEGKDKYYKEAKSYGLWQVIYI 98 >gi|228926172|ref|ZP_04089247.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932427|ref|ZP_04095308.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|254725583|ref|ZP_05187365.1| hypothetical protein BantA1_24526 [Bacillus anthracis str. A1055] gi|228827117|gb|EEM72870.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833425|gb|EEM78987.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 149 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 5/108 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + S LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +LL + + K++ + F + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKWKVFFDSLFMMGVFLFITKIVVWI 107 >gi|224371035|ref|YP_002605199.1| HsdR3 [Desulfobacterium autotrophicum HRM2] gi|223693752|gb|ACN17035.1| HsdR3 [Desulfobacterium autotrophicum HRM2] Length = 1076 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 35/146 (23%), Gaps = 27/146 (18%) Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ--TQDTRHKTQDTSMLPLYRKGDILI 158 F + GN G+P P + + SM PL G + Sbjct: 926 CVPFYTLKAAAGNFGLDTGLPFNGEPAGWVLIDDTKPDMFVLQVLGKSMEPLIPDGAYCL 985 Query: 159 LNSAIQV---NCG-------DRLLIKPRTGDIVAKVLISRRGR---------SIDLMSLN 199 + G + K S + I L S+N Sbjct: 986 FRGGSALGGSRNGRTVLVQSSGIFDPDTESSFTVKRYRSIKKEDPETGWRHSQIFLESVN 1045 Query: 200 CCYPVDTVEM---SDIEWIA---RIL 219 + ++ D I R+L Sbjct: 1046 KDFKTIQLDPENKEDFAIIGEFVRVL 1071 >gi|254500786|ref|ZP_05112937.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222436857|gb|EEE43536.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 281 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%) Query: 1 MTSFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M +++ E + L S LAR A LD ++ ++ E R P+ +++ Sbjct: 1 MDKRDRAELFRERLSAALRERELNRSDLARAAELDRSTVSQLL---SEESPRLPNGQALA 57 Query: 60 KILAATNETICQ 71 I +A + Sbjct: 58 AIASALGVSADW 69 >gi|126348447|emb|CAJ90170.1| putative regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 191 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 40/148 (27%), Gaps = 11/148 (7%) Query: 3 SFSHKKIWE----AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 + + + ++ + +T + L+ G+ ++ ++ + R PS E + Sbjct: 1 MTTADDVLAGVGPRLRQVRKEREVTLAALSETTGISVSTLSRLESG-----LRRPSLELL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I A + +L+ P K E P + Sbjct: 56 LPIAQAHQVPLDELVGAPPVGDPRVRAKPIERHGRTHWPLTRQPGGLQAFKVLEPRRKEE 115 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 P + +Y + + Sbjct: 116 PDPRTHEGYEWLYVLSGRLRL--VLGDH 141 >gi|54027227|ref|YP_121469.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018735|dbj|BAD60105.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 468 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ L+ LA++ + + N+ + R + + KI Sbjct: 6 VGARLRQLRTERGLSQVALAQQLEISASYLNQIEHDV-----RPLTVPVLLKISEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + ++ L P+ Sbjct: 61 ATFFSSQDDTRLIAELQEVVMDQELGIEADTQEIAEMVSAHPS 103 >gi|325290127|ref|YP_004266308.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965528|gb|ADY56307.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 80 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + N+T LA LD + NK + G S +++ KI AA +I +L Sbjct: 8 IKALRKSLNMTQKQLAELVKLDESMINKIENGHSVG-----SVQTLSKIAAALKVSITEL 62 Query: 73 LDLPFSDGRTTEKKEKE 89 LD P + ++ Sbjct: 63 LDDPCFPLENKKPEDDH 79 >gi|282880753|ref|ZP_06289450.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] gi|281305374|gb|EFA97437.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] Length = 112 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I EAI + NLT L + G+ ++ ++ S ++ K+ A Sbjct: 43 RIGEAIKKARVEQNLTQEELGERIGVKRAQISRLEKGYS------ISIPTMSKVFKALGV 96 Query: 68 T 68 + Sbjct: 97 S 97 >gi|260072652|gb|ACX30550.1| hypothetical protein SUP05_FGYC49P140033 [uncultured SUP05 cluster bacterium] Length = 131 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 7/65 (10%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + + + LA + G+ ++ ++ + + PS +++ K+ + Sbjct: 2 ESLAIRIKQSRQAKGFSQKQLAEEIGVSSSAISQYES--TSYFHSEPSIKNLTKLTKVLD 59 Query: 67 ETICQ 71 + Sbjct: 60 VSFEW 64 >gi|258651242|ref|YP_003200398.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554467|gb|ACV77409.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 504 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 I + + + LT S +A AG+ P++ + + E + +T Sbjct: 36 IGRRLRHLRKAAGLTLSDVAEAAGISPSALSLFENGKREAKLSLLTT 82 >gi|254822427|ref|ZP_05227428.1| transcriptional regulator, XRE family protein [Mycobacterium intracellulare ATCC 13950] Length = 477 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + R+ E LT LAR GL + N+ + Sbjct: 10 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRP 47 >gi|222147111|ref|YP_002548068.1| transcriptional regulatory protein [Agrobacterium vitis S4] gi|221734101|gb|ACM35064.1| transcriptional regulatory protein [Agrobacterium vitis S4] Length = 194 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 14/119 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + LT LA +G+ ++ +R P+ + ++ +A ++ Sbjct: 12 IAARLKAIRTARGLTLDQLADLSGVSRAMISRIERAEA-----SPTATLLARLCSALGQS 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----WNTVGVPEI 123 + G+ V G V +P Sbjct: 67 LSIFFAE-----PNHGSPLMRHADQPVWQDPETGYLRRAVSAPGTGARVDVVEVELPPG 120 >gi|215486731|ref|YP_002329162.1| DNA-binding transcriptional regulator HipB [Escherichia coli O127:H6 str. E2348/69] gi|218689414|ref|YP_002397626.1| DNA-binding transcriptional regulator HipB [Escherichia coli ED1a] gi|215264803|emb|CAS09187.1| DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|218426978|emb|CAR07847.2| DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|315297460|gb|EFU56739.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 16-3] Length = 88 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ A+ + +++ T S LA+K G+ + + + S + FKIL + Sbjct: 12 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQSLEL 66 Query: 68 TI 69 ++ Sbjct: 67 SM 68 >gi|126433238|ref|YP_001068929.1| hypothetical protein Mjls_0627 [Mycobacterium sp. JLS] gi|126233038|gb|ABN96438.1| protein of unknown function DUF955 [Mycobacterium sp. JLS] Length = 475 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + ++ L S PT Sbjct: 61 ATFFASQDDTRLVAELREVTMDRELGVEVDVSEIADMVAAHPT 103 >gi|66396313|ref|YP_240642.1| ORF054 [Staphylococcus phage 52A] gi|62636729|gb|AAX91840.1| ORF054 [Staphylococcus phage 52A] gi|116235518|gb|ABJ88853.1| Cro/CI family transcription regulator [Staphylococcus phage 80] Length = 92 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + E ++++ + +N+T L+ G+ ++ + + R + + Sbjct: 7 RKILSENLEQLMKENNITQVELSEAIGVSQSTISNWLKELK--YPRISKVQQLADYFNVP 64 Query: 66 NETICQLLDLPFSDGR 81 I + + Sbjct: 65 KSRITEERSIHQETIA 80 >gi|116628615|ref|YP_821234.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116101892|gb|ABJ67038.1| Transcriptional regulator, xre family [Streptococcus thermophilus LMD-9] Length = 170 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F + + R+ ++ + LA G+ S + ++ +P+ ++ K Sbjct: 1 MT-FIIQNFGPNLARLRIEKGVSQTQLAEYLGIGKQSISDYEKQKS-----YPTFANLDK 54 Query: 61 ILAATNETICQ 71 I N T Q Sbjct: 55 IAEYFNATPTQ 65 >gi|331694466|ref|YP_004330705.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949155|gb|AEA22852.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 149 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I E ++ LA+ G+ ++ +R R PS E + +I Sbjct: 27 DDIGSYIRSQRESAQVSLRQLAKVTGVSNPYLSQVERG-----LRKPSAEILQQIAKGLR 81 Query: 67 ET 68 + Sbjct: 82 IS 83 >gi|325840453|ref|ZP_08167052.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490320|gb|EGC92649.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 120 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 5/98 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I +H T LA K L + N + R P +++ ++ N + Sbjct: 4 IGSKIRVERNKHGWTQVELANKMNLSKQTINNWEHG-----RRIPDIQTLKELSNLFNVS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + L+ + + F Sbjct: 59 LEYLVGESSPAVPENHLVNTVNKIKDTFGDDAVVLFKD 96 >gi|325567313|ref|ZP_08143980.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] gi|325158746|gb|EGC70892.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] Length = 284 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ F+ +KI + I + NLT S LA + + + + +R P E + + Sbjct: 1 MSEFNMRKIGQQIATKRKEKNLTQSNLADQLLVSYQAVSNWERGNS-----LPDIEKLPQ 55 Query: 61 ILAATNETICQ 71 + A +I + Sbjct: 56 LAAILGLSIDE 66 >gi|298248193|ref|ZP_06971998.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297550852|gb|EFH84718.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 922 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 7/71 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + + + E T LA + +D + +R R+PS E + Sbjct: 1 MTTRRIPNVL--LKQAREEKGWTQRRLALELDVDEKTVQSWERGT-----RFPSLEYRKQ 53 Query: 61 ILAATNETICQ 71 + + + Q Sbjct: 54 LSDLLGKPLEQ 64 >gi|238028581|ref|YP_002912812.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237877775|gb|ACR30108.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 218 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 6/171 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 32 VGLNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L G E+ + ++ S P +++ + V + + Sbjct: 87 VAAFLRRHAVLGFEHLPAERAVRVVGSSGRFSSRALYPEGEPAAAEFHELRVAPLHTETG 146 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 A + ++ L+ V D+ GD Sbjct: 147 ARRA-PGTTINLVVSEGTLELAVNDRRQLLATGDAIVFDADQPYTLRNPGD 196 >gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] Length = 378 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + I +R LT L G+ + ++ + P + + + Sbjct: 4 KKIGKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNY-----MPDLSLLIPLSETLD 58 Query: 67 ETICQ 71 ++ + Sbjct: 59 ISLNE 63 >gi|209808837|ref|YP_002274408.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880760|ref|ZP_05660413.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257892130|ref|ZP_05671783.1| predicted protein [Enterococcus faecium 1,231,410] gi|257895014|ref|ZP_05674667.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562584|ref|ZP_05833092.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528674|dbj|BAG74975.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814988|gb|EEV43746.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257828490|gb|EEV55116.1| predicted protein [Enterococcus faecium 1,231,410] gi|257831393|gb|EEV58000.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073094|gb|EEW61441.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 460 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 2/62 (3%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I I + + N+T + A GL + + + E+I + L Sbjct: 201 LKNLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKT--LEAIARALD 258 Query: 64 AT 65 Sbjct: 259 VP 260 >gi|154501121|ref|ZP_02039159.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] gi|150269867|gb|EDM97399.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] Length = 89 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 14/43 (32%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + I + ++ LT LA K + K + G Sbjct: 5 REDYGSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTG 47 >gi|325956992|ref|YP_004292404.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325333557|gb|ADZ07465.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 122 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M F+ K + I + ++ L LA++ + + + P ++++ Sbjct: 1 MKEFNRKILANNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAI-----PGSDTLDI 55 Query: 61 ILAATNET 68 + + + Sbjct: 56 LADFFDVS 63 >gi|295107448|emb|CBL04991.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 15/42 (35%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + E I R + +T + LA GL + + + Sbjct: 3 VGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRAVKP 44 >gi|291526368|emb|CBK91955.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291526813|emb|CBK92399.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 187 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 14/185 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M SH + E + R+ + ++ +A + G+ + + ++ PS + K Sbjct: 1 MDYLSH-NVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTAN-----PSIGVLGK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + +L+D P D + F + Sbjct: 55 ITSGLRIEFQRLIDPPRVDYALISPDDLVPTKELLGQYRVWTCFPYEDSREVEVYRIDVE 114 Query: 121 PEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLL 172 P G + D + + +G + + N GDR+ Sbjct: 115 PGGVYTSGGHGEKTREYLTVTDGVLTVECHDHVQEIHRGQVYKFETDQPHLYRNDGDRVA 174 Query: 173 IKPRT 177 Sbjct: 175 SCMCF 179 >gi|312196273|ref|YP_004016334.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311227609|gb|ADP80464.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 203 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 24/182 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + + LT +GLA +G+ +K +R + P+ + K Sbjct: 1 MSDTLGAALAATVRSARAARGLTVAGLADASGVSRAMISKVERAEAQ-----PTAALLAK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A T+ +L+ S G + + E PL P SG S TG + V + Sbjct: 56 LSGALGLTLSELIARAES-GPSRLTRHGEQPLWTDPDSGYSRRAVSPPASTGLELVQVEL 114 Query: 121 PE-----------------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 P I + ++ D Q + D + +N Sbjct: 115 PAGATVAMPASTYRFIDQQIWVLAGRLRFVEGDDVHELGQGDCLQLG-APADCVYVNPTE 173 Query: 164 QV 165 Sbjct: 174 AP 175 >gi|229160095|ref|ZP_04288097.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] gi|228623406|gb|EEK80230.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] Length = 149 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + E+ N + S LA K + S +K + +PS E I + TI Sbjct: 5 ERLKQEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRGDEELTQKVIEDSKKLAYPKW 84 >gi|215425689|ref|ZP_03423608.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92] Length = 299 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHP 102 >gi|158425156|ref|YP_001526448.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332045|dbj|BAF89530.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 192 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 9/134 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ + + E + + + LA ++ + +K +R P+ E + + Sbjct: 1 MDDITG-RLARRLRQEREARSWSLADLAERSNVSRAMISKIERGEA-----SPTAELLNR 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNT 117 + T+ + + G+ V P G Sbjct: 55 LATGFGLTLASIFAEADPGLDPAAPRVARRAEQAEWRDPGTGYLRRNVSPPGAPALEIVE 114 Query: 118 VGVPEIRSPHNGIY 131 V P Y Sbjct: 115 VQFPSGGRVVFDAY 128 >gi|146300326|ref|YP_001194917.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154744|gb|ABQ05598.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 131 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 4/64 (6%) Query: 1 MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M++ + K I I R+ E ++ LA G+ + + + R I Sbjct: 1 MSTATKPKHIGRNISRIRELKDMKQEALADALGITQQTISNIENSETVDEQR---LIEIA 57 Query: 60 KILA 63 K L Sbjct: 58 KALD 61 >gi|15597081|ref|NP_250575.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107101318|ref|ZP_01365236.1| hypothetical protein PaerPA_01002352 [Pseudomonas aeruginosa PACS2] gi|254240277|ref|ZP_04933599.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192] gi|9947875|gb|AAG05273.1|AE004614_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126193655|gb|EAZ57718.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192] Length = 183 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 5/117 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + + LT + LA + + ++ +R P+ + ++ Sbjct: 5 ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLAGGLG 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + +LL + ++ ++ + +G + V +P Sbjct: 60 VALSELLGDAQAPAEPLCRRAQQEVWEDPASGYRRRQVGARDPRSGCEMVEVEIPAN 116 >gi|332297377|ref|YP_004439299.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180480|gb|AEE16168.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 195 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 51/152 (33%), Gaps = 11/152 (7%) Query: 1 MTSFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MTS +K++ E + + ER T +A++AG+ + ++ +R P+ + Sbjct: 1 MTSTQNKRVPYRFGEKLRAVRERKGYTLKVVAQRAGVSESLVSQIERN-----KVSPAID 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ + + + L + + + E + + Sbjct: 56 TLLMLADVLDINLEFLFEEYRRNRPVQVIRANERRTVEEAEVIYEELAKPTESDGKHALE 115 Query: 117 T--VGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146 + + +P H G Y ++ + + Sbjct: 116 SYLIRIPANGKTHRGSYGHMGRELGFIIEGKA 147 >gi|329849056|ref|ZP_08264084.1| XRE family transcriptional regulator [Asticcacaulis biprosthecum C19] gi|328844119|gb|EGF93688.1| XRE family transcriptional regulator [Asticcacaulis biprosthecum C19] Length = 197 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 30/201 (14%) Query: 11 EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + R T AR+ G + E S + + Sbjct: 6 ERLMRARIEAGFETAVDAARRFGWTSSY------RNNESGTASFSFKKALEYAEKFKVRA 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L +E ++P++ +G G + +++ + + Sbjct: 60 AWLYAGIGPM------REAKVPVIGRALAGPDGSYIDD-------YDSGDFEPLEPFNI- 105 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNC--GDRLLIKPRTGDIVAKVLI 186 TSM P + G+I + + + ++L++ G + K+L Sbjct: 106 -----EDSVAVIVDGTSMTPRFMPGEIAVFGHKYDDPSPLLNKQVLVRTIDGQRMIKILR 160 Query: 187 S-RRGRSIDLMSLNCCYPVDT 206 S + DL SLN + Sbjct: 161 SSKTPGLWDLHSLNPAFAPIE 181 >gi|225388149|ref|ZP_03757873.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] gi|225045810|gb|EEG56056.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] Length = 179 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 5/99 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + L+ LA + + +K ++ +P E++ + N ++ L Sbjct: 7 LRQIRKEKGLSQEDLAELLDVSRQAVSKWEQGAG-----YPEVETLLLLSNRLNISLDSL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + + E +L P + V + Sbjct: 62 MATEIAREGGGGRAEVTGTILITSPHENVVVSCYKVISS 100 >gi|218438443|ref|YP_002376772.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171171|gb|ACK69904.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424] Length = 114 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + + I + + L+ LA + GLD T +K + + + + + Sbjct: 2 EQNFGQIIRQARKDKGLSQRELAERLGLDFTYLSKLENNRADYAPKEEVIRVLAQ 56 >gi|71083340|ref|YP_266059.1| hypothetical protein SAR11_0635 [Candidatus Pelagibacter ubique HTCC1062] gi|91762229|ref|ZP_01264194.1| hypothetical protein PU1002_03151 [Candidatus Pelagibacter ubique HTCC1002] gi|71062453|gb|AAZ21456.1| hypothetical protein SAR11_0635 [Candidatus Pelagibacter ubique HTCC1062] gi|91718031|gb|EAS84681.1| hypothetical protein PU1002_03151 [Candidatus Pelagibacter ubique HTCC1002] Length = 131 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 6/106 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + + E + + + Q SM + GD+L+++ +++ ++ Sbjct: 22 DYIE--EDVDLNVHLIKNVPATFIIRVQGKSMTDVGIYDGDLLVIDRSLKPKNFSTVV-A 78 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW-IARIL 219 ++V K + + L S + + + E I ++ Sbjct: 79 NVHDELVVKSFVRSKDGQF-LTSGSKNIEDKIIIGDESEVFIWGVV 123 >gi|154248642|ref|YP_001419600.1| hypothetical protein Xaut_4724 [Xanthobacter autotrophicus Py2] gi|154162727|gb|ABS69943.1| protein of unknown function DUF955 [Xanthobacter autotrophicus Py2] Length = 474 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 18/38 (47%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 A+ R+ E+ L S LA++ + P+ N+ + Sbjct: 8 GHAVRRLREKLGLKQSELAQRLAVSPSYINQIESNQRP 45 >gi|83951509|ref|ZP_00960241.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83836515|gb|EAP75812.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 143 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%) Query: 1 MTSFSHKKIW---------EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 MT ++ W + + E +T + LAR+ G+ + K + E R Sbjct: 13 MTETDSEQTWYDPDATTFGDRLAGAREASGMTQTQLARRLGVKEKTIEKWENDLSEPRAN 72 Query: 52 WPST 55 S Sbjct: 73 RLSM 76 >gi|116619436|ref|YP_821592.1| hypothetical protein Acid_0295 [Candidatus Solibacter usitatus Ellin6076] gi|116222598|gb|ABJ81307.1| hypothetical protein Acid_0295 [Candidatus Solibacter usitatus Ellin6076] Length = 268 Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 25/127 (19%) Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + V PE + SM P G + + + + Sbjct: 148 ESAVEDWVPAPEGM-------QLSPDLFVGHVAGRSMEPRIPDGSLNLFRLHPAGSRQGK 200 Query: 171 LLIKPRTGDI------VAKVL-----ISRRGRS----IDLMSLNCCYPVDTVEMSDIEWI 215 +L+ R G + K + L LN + VE + Sbjct: 201 ILLIERFGVLDETARYTIKRYTSRKVYRSEDEWQHENVRLEPLNPEFEAWDVEPEGFAVV 260 Query: 216 A---RIL 219 A R++ Sbjct: 261 AEWLRVI 267 >gi|317473295|ref|ZP_07932590.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] gi|316899131|gb|EFV21150.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] Length = 180 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 9/175 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ E+ L+ L++ +G+ + + +R P+ +++KI Sbjct: 5 VAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGN-----PTISTLWKISNGMKVP 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L P + + + E L + F + + + + Sbjct: 60 FDALTVRPKTPYEIIKTADIEPLLEDSGRVKNYPLFPDDADRKFAVY-YLKLEPYSRWES 118 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIVA 182 + T + + L + GD TG+ Sbjct: 119 EAHLKGTTEFITVFHGDLEI--CADYHKFTLTKDESIRFPGDTAHSYRNTGNDTV 171 >gi|302873525|ref|YP_003842158.1| signal peptidase I [Clostridium cellulovorans 743B] gi|307688295|ref|ZP_07630741.1| signal peptidase I [Clostridium cellulovorans 743B] gi|302576382|gb|ADL50394.1| signal peptidase I [Clostridium cellulovorans 743B] Length = 174 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%) Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GD-RLLIKP 175 +P + ++ + K SM P + D L++ GD + P Sbjct: 15 IPFTLAFIFTLFVKKFVFFNIKVPTESMYPTIKIDDRLLVTKVYNPKNLSTGDLIVFTIP 74 Query: 176 RTGDIVAKVLISRRGRSIDL 195 + K LI + G +++ Sbjct: 75 EYDKKLIKRLIGKPGDVVEI 94 >gi|239946011|ref|ZP_04697948.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239992479|ref|ZP_04713143.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291449463|ref|ZP_06588853.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291352410|gb|EFE79314.1| regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 199 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 38/133 (28%), Gaps = 6/133 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ + +T + L+ G+ ++ ++ + G R PS E + I A Sbjct: 18 VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGG-----RRPSLELMLPIARAHEVP 72 Query: 69 ICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L+ + P + G + + Sbjct: 73 LDDLVGAAPVGDPRVRAKPIVQHGRTMLPLTARPGGLQAYKLIQEPGSGGPPEQRTHEGY 132 Query: 128 NGIYAIQTQDTRH 140 ++ + + Sbjct: 133 EWLFVLSGKLRLL 145 >gi|308235243|ref|ZP_07665980.1| transcriptional regulator [Gardnerella vaginalis ATCC 14018] gi|311115056|ref|YP_003986277.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946550|gb|ADP39254.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 157 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + +T LA G+ S + + R I KI ++ Sbjct: 5 NIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTR-----LIDKICDKFKVSLFD 59 Query: 72 LLDLPF 77 ++ Sbjct: 60 IVHEKE 65 >gi|223984758|ref|ZP_03634870.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] gi|223963244|gb|EEF67644.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] Length = 180 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 48/173 (27%), Gaps = 11/173 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I R+ E L+ LA+ + + + + +R P+ +++KI Sbjct: 5 VAANIKRLREERKLSMEELAKFSSVSKSMIAQIERGEGN-----PTLSTLWKISNGLKVP 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L P + + E + + F + + + + + Sbjct: 60 FDSLTVRPKTQHEIVKISEIQPLFENEGKVRNYSLFPDDENRRFAIY-YLELEKGSYWES 118 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVN-CGDRLLIKPRTGD 179 + T + + D I+ + D + GD Sbjct: 119 EAHLQGTTEFITLFSGIV---KIKVKDKHFIIQKGDSLRFNADAVHSYQNIGD 168 >gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 179 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + + +LT LA + L ++ + PS ES IL Sbjct: 2 NIGQKLRNLRKIKDLTQEELAERTDLSKGYISQIESGQS-----SPSMESFLHILEVLGT 56 Query: 68 TI 69 + Sbjct: 57 SP 58 >gi|148655090|ref|YP_001275295.1| helix-turn-helix domain-containing protein [Roseiflexus sp. RS-1] gi|148567200|gb|ABQ89345.1| helix-turn-helix domain protein [Roseiflexus sp. RS-1] Length = 119 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M SF ++++ E I R +R LT + L + G+ + + + R E++ Sbjct: 1 MPSF-NERVGEVIKRKRQRDRLTQAELGSRIGVSGSYISSIENGQSSA--RIAEIEALAT 57 Query: 61 ILAATNET 68 + T Sbjct: 58 VFRTTAFE 65 >gi|15671989|ref|NP_266163.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490506|ref|YP_003352486.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722843|gb|AAK04105.1|AE006240_3 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374324|gb|ADA63857.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 107 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NL+ LA+K + S +K + P+T+ I + + Sbjct: 2 EISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKS-----LPTTDQIILLSEIFDC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 ++ LL + + + L GF +F Sbjct: 57 SLDTLLKGDKKMEEKAKHEIDDKRTLKLIYKVGWGFIIPFLF 98 >gi|21223622|ref|NP_629401.1| signal peptidase protein [Streptomyces coelicolor A3(2)] gi|289769158|ref|ZP_06528536.1| signal peptidase [Streptomyces lividans TK24] gi|9968705|emb|CAC05964.1| signal peptidase protein [Streptomyces coelicolor A3(2)] gi|289699357|gb|EFD66786.1| signal peptidase [Streptomyces lividans TK24] Length = 146 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198 + SM+P GD+L+++ +V GD ++++ +V K RRG ++ Sbjct: 23 EVTGPSMVPTLHHGDVLLVHWGARVRPGDVVVLRHPFQQDLLVVKRAAERRGAGWWVLGD 82 Query: 199 NC----CYPVDTVEMSDIEWIARI 218 N V D+ + R+ Sbjct: 83 NAFAGGDSTDYGVVPQDL-VLGRV 105 >gi|119718420|ref|YP_925385.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614] gi|119539081|gb|ABL83698.1| helix-turn-helix domain protein [Nocardioides sp. JS614] Length = 128 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 5/84 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + E + L+ LA +AG+ ++ +R R PS E + +I Sbjct: 8 RTVEGLGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERG-----LRRPSAEVLQQIAK 62 Query: 64 ATNETICQLLDLPFSDGRTTEKKE 87 A + QL Sbjct: 63 ALRISAEQLYIRAGIVDPHAGSPG 86 >gi|325833460|ref|ZP_08165909.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485384|gb|EGC87853.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 71 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + K + + + + E NLT LA G+ + K + R + + + K Sbjct: 1 MTHATRKNVGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGN-----RNATIDFMEK 55 Query: 61 ILAATN 66 + Sbjct: 56 VALGLG 61 >gi|118615955|ref|YP_904287.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118568065|gb|ABL02816.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 263 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/163 (9%), Positives = 36/163 (22%), Gaps = 12/163 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E H+ + + LA G+ + +R R P ++ K+ Sbjct: 1 MSRESAGAAIRALRESHDWSLADLAAATGVSIMGLSYLERGA-----RKPHKGTVQKVEN 55 Query: 64 ATNETICQLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + E + E G Sbjct: 56 GLGLPPGTYSRMLVAADPEAELARLLAARPTETASPRRRGVVVVDRHSDTDVLEGYAEAQ 115 Query: 118 VG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 + + + + + + + Sbjct: 116 LDALRSVIDRLPASTSNEYDTYILSVVAQCVKAEMLAASSWRV 158 >gi|319934812|ref|ZP_08009257.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319810189|gb|EFW06551.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 302 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + L+ LA K + + +K + +P + + I TI L Sbjct: 7 LQSLRKEKGLSQEALAEKLHVSRQAVSKWESGAG-----YPEMDKLILISDLFGVTIDYL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + ++ E + + F G + + Sbjct: 62 IKDSHESVPDDQRAESKYFMNSQKIKEYMNFKRHFGLRIGGAVSAI 107 >gi|319790635|ref|YP_004152268.1| helix-turn-helix domain protein [Thermovibrio ammonificans HB-1] gi|317115137|gb|ADU97627.1| helix-turn-helix domain protein [Thermovibrio ammonificans HB-1] Length = 90 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 7/63 (11%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H + E + + E ++ LA + G+ P+ + S +++ K+LA Sbjct: 21 LKHD-LAEQLKELMESKGISKKELAERMGVSPSYITRIF------GADNISLKTVAKVLA 73 Query: 64 ATN 66 A Sbjct: 74 ALE 76 >gi|255527936|ref|ZP_05394778.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255508363|gb|EET84761.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 183 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 7/150 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + R+ NL+ LA +G+ ++ ++ P+ +++KI N Sbjct: 7 IAENLKRLRLERNLSLGQLAELSGVSKVMLSQIEKGDSN-----PTINTVWKIAKGLNVP 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L+D + +K E E ++ + + + + + + Sbjct: 62 YTVLIDKHEDETSVVKKSEAEYQNSEDGSYRVYCYYGNTPHRNFELF-LLELDSEATYTS 120 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 ++ ++Q+ Q +L D L+ Sbjct: 121 VGHSEKSQEYISVIQGELVLTT-NNEDYLL 149 >gi|237668382|ref|ZP_04528366.1| transcriptional regulator, Cro/CI family [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656730|gb|EEP54286.1| transcriptional regulator, Cro/CI family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 149 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I LT L +K G+ ++ K + IE R + ++ K L + Sbjct: 2 NINNIIKSRRLELGLTYEELGKKIGVGKSTVRKWETGLIENIKRD-NIIALSKALDISPS 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 I D ++ T E +I LL Sbjct: 61 IIMGWDDTNSNELSETHLSESQIELLNI 88 >gi|167618211|ref|ZP_02386842.1| DNA-binding protein [Burkholderia thailandensis Bt4] Length = 185 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 13/162 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ T LA AGL + +K +R PS K+ A + Q Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSV-----PSIAVALKLSKALQVDVEQ 58 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L T + + + S + V P R + + Sbjct: 59 LFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPP-RDYVSSAF 117 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + S+ + I++ GD + Sbjct: 118 REHEGEEMLFVHKGSVEIEFPNE-------TIKLKTGDSVYF 152 >gi|149189972|ref|ZP_01868250.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1] gi|148836138|gb|EDL53097.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1] Length = 155 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + + LA +GL + + +R G S +S+ + T + Q Sbjct: 3 IRKLRLQRGWSQEQLAELSGLSIRTIQRIERGQKPGLE---SLKSLAAVFETTITELQQE 59 Query: 73 LDLPF 77 + Sbjct: 60 PKMTS 64 >gi|90416619|ref|ZP_01224550.1| hypothetical protein GB2207_05437 [marine gamma proteobacterium HTCC2207] gi|90331818|gb|EAS47046.1| hypothetical protein GB2207_05437 [marine gamma proteobacterium HTCC2207] Length = 121 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + R+ + ++ SGL+R G+ + N+ + P +S+ I Sbjct: 10 LMRESMSTELARLMKLEGISQSGLSRATGVPQPTINRILSQVTQ----DPRRDSMISIAN 65 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L P + + + + Sbjct: 66 YFGVHLESLYGTPGIQRSSKKDPKAVEDVFNRI 98 >gi|37527342|ref|NP_930686.1| hypothetical protein plu3469 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786776|emb|CAE15842.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 399 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 30/128 (23%), Gaps = 2/128 (1%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ E L+ L R P++ K + S+ +IL Sbjct: 11 ERLTQIREARGLSKINLGRLVDRSPSTITKWENGNHS--PDAEVLHSLSQILNCPVSWFT 68 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + + L G+F + V Sbjct: 69 KPIVKYEKKPVFFRTLSTTAKDLCIASERYMGWFQELSCKMQEYLDYPEVNIPHLNVKDY 128 Query: 131 YAIQTQDT 138 AI Q Sbjct: 129 RAIDDQLI 136 >gi|317054764|ref|YP_004103231.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447033|gb|ADU20597.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 198 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 5/97 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I R+ + LA K+ + + + + +P S+ + Sbjct: 2 ELSKTIKRLRTEKGWSQETLAEKSYVSRQTISNWENEKN-----YPDVHSLLILSDLFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 ++ +L+ + T + L G G Sbjct: 57 SLDELIKGDVETMKNTIHNKDAYALKRAQWCGVIGLI 93 >gi|302382805|ref|YP_003818628.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193433|gb|ADL01005.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 475 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + R+ LT + +A G+ P+ N +R R S + + ++ Sbjct: 11 LGARVKRLRRDRGLTQTAMAGDLGVSPSYLNHIERNQ-----RPVSAQLLLRLAD 60 >gi|152996491|ref|YP_001341326.1| putative prophage repressor [Marinomonas sp. MWYL1] gi|150837415|gb|ABR71391.1| putative prophage repressor [Marinomonas sp. MWYL1] Length = 150 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 T + Q M + GD+L+++ ++ GD ++ V L + Sbjct: 53 PTTTFFVRAQGEPMEREDIQTGDVLVVDRSLTARHGDIVIAFEHGKMAVM-TLQLKPD-- 109 Query: 193 IDLMSLNCCYP 203 + L N Y Sbjct: 110 VLLRPKNKAYA 120 >gi|116694764|ref|YP_728975.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113529263|emb|CAJ95610.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 198 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 38/114 (33%), Gaps = 7/114 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+ + ++ L+ L+R+AG+ + ++ +R P+ ++++ A Sbjct: 17 VGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVN 71 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF--PPSGSGGFFDSGVFPTGNKWNTVGV 120 + L ++ + + P G ++ + Sbjct: 72 LTDFLAGGAAERPAGGITVVQPHAIPSLKSPDTRCDLRILGPIDLAGRFEWYEL 125 >gi|160880106|ref|YP_001559074.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428772|gb|ABX42335.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 268 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I H+L+ LA K G+ S +K + G P + + + + Sbjct: 2 KLGEKIVMFRTEHHLSQGDLAEKLGVSRQSISKWETGGSV-----PDLDKLIALSELFDV 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|91224300|ref|ZP_01259562.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein [Vibrio alginolyticus 12G01] gi|91190642|gb|EAS76909.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein [Vibrio alginolyticus 12G01] Length = 88 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 14/38 (36%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + + +T LA+K G+ ++ N + Sbjct: 1 MSNLKAIRGELGVTQQALAKKVGVSQSAVNHYENGNRT 38 >gi|121997220|ref|YP_001002007.1| XRE family transcriptional regulator [Halorhodospira halophila SL1] gi|121588625|gb|ABM61205.1| transcriptional regulator, XRE family [Halorhodospira halophila SL1] Length = 88 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 +I + + + L+ LA AG+D ++ +K +R G S ++F IL Sbjct: 16 GASIREIRQENGLSQEQLAMDAGIDQSTLSKIERIG----PHVTSWRTLFAILDVLGCE 70 >gi|329897117|ref|ZP_08271861.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] gi|328921409|gb|EGG28799.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] Length = 222 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 50/165 (30%), Gaps = 19/165 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ + + T + ++++ G+ + +K + + + S+ K+ Sbjct: 24 IGRRLRQLRKEQDWTLADVSKRTGISVGTLSKLEHGKTD-----LNFSSVNKLATGLGLA 78 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVPEI 123 + L + +++ S V + N+ + Sbjct: 79 VTDLTNPSSHMMGRRAITIGGHGVMFNTTDVDYEVLCSEVANHRQGYLKGVVNSFTFDDS 138 Query: 124 RSPH-----NGIYAIQTQDTRHKTQDTSMLPLYRK-GDILILNSA 162 H +Y + + P+ GD ++ +S+ Sbjct: 139 LPWHRHQGQEFLYVLSG---GLELYTELYEPVLLNAGDSILFDSS 180 >gi|302866468|ref|YP_003835105.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315502877|ref|YP_004081764.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5] gi|302569327|gb|ADL45529.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca ATCC 27029] gi|315409496|gb|ADU07613.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5] Length = 214 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I R + LT GLA ++GL ++ +R S+ K L + Sbjct: 28 VGGRIRRYRKERGLTLRGLASRSGLSIGFLSQVERGISSIGLTALG--SVAKALDRSVAD 85 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-----EI 123 ++ + + + + + + V P Sbjct: 86 FFDAGTAAPDSTVSSLPRHFTLTRAETAATQYVSGQQTYRMLSDRGPDLVLEPMLVHIAP 145 Query: 124 RSPHNGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVN 166 Y + ++ + + GD + L S++ Sbjct: 146 GGRRENAYGHRGEEFAYVISGELLYEVEGVEHRLFPGDSVHLRSSVPHQ 194 >gi|257897454|ref|ZP_05677107.1| predicted protein [Enterococcus faecium Com12] gi|293377213|ref|ZP_06623419.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] gi|257834019|gb|EEV60440.1| predicted protein [Enterococcus faecium Com12] gi|292644162|gb|EFF62266.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] Length = 82 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I E ++ L + AG + T+ + + R P+ +++ ++ ++ Sbjct: 22 LGARIAHAREGLGISQGELGKLAGFNQTTISLIETG-----KRLPNLKTLIRLSKILKKS 76 >gi|257876195|ref|ZP_05655848.1| predicted protein [Enterococcus casseliflavus EC20] gi|257810361|gb|EEV39181.1| predicted protein [Enterococcus casseliflavus EC20] Length = 284 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ F+ +KI + I + NLT S LA + + + + +R P E + + Sbjct: 1 MSEFNMRKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNS-----LPDIEKLPQ 55 Query: 61 ILAATNETICQ 71 + A + +I + Sbjct: 56 LAAILDLSIDE 66 >gi|257866591|ref|ZP_05646244.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872893|ref|ZP_05652546.1| predicted protein [Enterococcus casseliflavus EC10] gi|257800549|gb|EEV29577.1| predicted protein [Enterococcus casseliflavus EC30] gi|257807057|gb|EEV35879.1| predicted protein [Enterococcus casseliflavus EC10] Length = 304 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ F+ +KI + I + NLT S LA + + + + +R P E + + Sbjct: 1 MSEFNMRKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNS-----LPDIEKLPQ 55 Query: 61 ILAATNETICQ 71 + A + +I + Sbjct: 56 LAAILDLSIDE 66 >gi|226366458|ref|YP_002784241.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226244948|dbj|BAH55296.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 184 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ R ER ++ + +AR+AG+ ++ ++ + G PS E+++ + A + Sbjct: 10 IGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGN-----PSVETLWALCVALDVP 64 Query: 69 ICQ 71 + Q Sbjct: 65 MSQ 67 >gi|215488929|ref|YP_002331360.1| predicted DNA-bining transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|215267001|emb|CAS11446.1| predicted DNA-bining transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] Length = 407 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 6/117 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++ L+ + LA G+ P + +K + + P +E++ ++ N T Sbjct: 12 RLAQVLAARRLSQTQLATMVGVSPATISKWRSGQ-----QAPESEALERLATVVNVTPEW 66 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + T V +PE++ P Sbjct: 67 FTRPLLKGMSKPLFRSNASAHVAARAMLETRIHWANELVTK-LTEFVDLPELKLPRR 122 >gi|182626312|ref|ZP_02954068.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908410|gb|EDT70952.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 180 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ ++ LT LA G+ + + + + + E++ L ++ Sbjct: 3 IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALANSLKLDLKS 60 Query: 69 ICQLLDLPFSDGRTTEKKE 87 L +E Sbjct: 61 FFDDTLLEEDYYLKPLNEE 79 >gi|217959909|ref|YP_002338465.1| DNA-binding protein [Bacillus cereus AH187] gi|229139101|ref|ZP_04267678.1| transcriptional regulator, possible MerR [Bacillus cereus BDRD-ST26] gi|217064097|gb|ACJ78347.1| DNA-binding protein [Bacillus cereus AH187] gi|228644456|gb|EEL00711.1| transcriptional regulator, possible MerR [Bacillus cereus BDRD-ST26] Length = 152 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 5/133 (3%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H ++ + + +++ +T A AG+ + ++ +R PS + I Sbjct: 1 MIHDRLGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHAN-----PSLSVLELIAK 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A N + L KK+ + + F G + + E Sbjct: 56 ALNVPLFTLFINEIDTDSLISKKKDRKKVYRENSDHIVYDVLTPDFMKGEVYVELEGKEY 115 Query: 124 RSPHNGIYAIQTQ 136 + I Sbjct: 116 FLEEGDVVRIPPN 128 >gi|162448594|ref|YP_001610961.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159176|emb|CAN90481.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 230 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 5/136 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R L+ LA+ +G+ + + P+ ++KI A Sbjct: 51 VASNLKRFRAERGLSLERLAKASGVSRAMLGQIELGQST-----PTINVLWKIARALGVP 105 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L+ S T + L S P ++ + + H Sbjct: 106 FSALMSQATSPVTTVMQASHARILRSRNGDFSSRALFPMDRPRNVEFYELRLAPRSVEHA 165 Query: 129 GIYAIQTQDTRHKTQD 144 +A T + T+ Sbjct: 166 DAHAPGTAENLIVTEG 181 >gi|158423451|ref|YP_001524743.1| hypothetical protein AZC_1827 [Azorhizobium caulinodans ORS 571] gi|158330340|dbj|BAF87825.1| hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 23/41 (56%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 ++ + I R+ + +NL+ S LA ++G+ + ++ +R Sbjct: 48 QLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNP 88 >gi|186475185|ref|YP_001856655.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184191644|gb|ACC69609.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 229 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 6/136 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ L+ LAR +G+ + + PS + + K+ AA Sbjct: 36 RVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKV 90 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ L +G ++ ++ P+ +++ + + + + Sbjct: 91 SVAAFLRRHAVNGFEHLPADRSARVVTSNGRYWTRALHPDGEPSTAEFHELRIAPLHTEP 150 Query: 128 NGIYAIQTQDTRHKTQ 143 A Sbjct: 151 GTQRA-PGTTVNLVVS 165 >gi|118430729|ref|YP_873954.1| transcription regulator [Staphylococcus phage phiNM] gi|104641621|gb|ABF73035.1| transcription regulator [Staphylococcus aureus phage phiNM1] Length = 77 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +D +R T S A K G+ P+++N + + R I K L Sbjct: 3 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRDAF--RIAKTLD 51 >gi|52842577|ref|YP_096376.1| hypothetical protein lpg2368 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|254498107|ref|ZP_05110864.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|52629688|gb|AAU28429.1| hypothetical protein lpg2368 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|254352673|gb|EET11451.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 75 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H+ I I ++ L+ LAR AG+ T ++ R ++ K+L Sbjct: 1 MPKHE-IANLIHYYRKQSGLSQQELARLAGVGKTVIYDIEKGKESVR-----LNTLLKVL 54 Query: 63 AATN 66 N Sbjct: 55 DVLN 58 >gi|72161652|ref|YP_289309.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71915384|gb|AAZ55286.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 267 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 48/180 (26%), Gaps = 15/180 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + I + L+ LA+ L PT + +R R + + +I AA Sbjct: 10 KIGQKIREHRQHAGLSQEELAKLVALSPTMLSAMERGT-----RGIKRDHVERIDAALGI 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 S G + + + T Sbjct: 65 PGTLTELWDRSRGAGLPP---WYEQVADLERAASEIWVYHPLMVPGLLQTEEYAAHILRV 121 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDI-----LILNSAIQVNC-GDRLLIKPRTGDIV 181 + A + + + ++++ + G R +++ + G ++ Sbjct: 122 SHPRATPAEIEEL-VRGQMERKAIFDQERPPRLIVVVDEGVLRRPTGGREVMRRQIGHLL 180 >gi|54307847|ref|YP_128867.1| transcriptional regulator [Photobacterium profundum SS9] gi|46912273|emb|CAG19065.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 230 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 51/215 (23%), Gaps = 12/215 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++A+ ++ L GL + ++ R + +I N +I Sbjct: 22 LERIKQLAKIQGISQKQLGESLGLQQGTMSRKLSGKYGIEVRE-----LERIAVTLNTSI 76 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL + G+ + V + Sbjct: 77 GYLLTGQIDTSTQATTAITHESSQGSTCTYIPIIHRKDF---GSFIDGESVNVVSKRVIP 133 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189 + + + ++ G + + R + + Sbjct: 134 QHLERDDCLGLFVDNENISQCAPIGSYALATKQAAYRPKQPVFASVRNSEPDFYHMTQLA 193 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221 I S +P V + + I+ WA Sbjct: 194 DGVIFSTSQ-PDFPNLFVNNDEFKVHGYIIQSDWA 227 >gi|50914452|ref|YP_060424.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10394] gi|56808231|ref|ZP_00366003.1| COG1476: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] gi|71903787|ref|YP_280590.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|94988808|ref|YP_596909.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94992693|ref|YP_600792.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|94994634|ref|YP_602732.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|209559622|ref|YP_002286094.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] gi|306827100|ref|ZP_07460396.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|50903526|gb|AAT87241.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10394] gi|71802882|gb|AAX72235.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] gi|94542316|gb|ABF32365.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS9429] gi|94546201|gb|ABF36248.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS2096] gi|94548142|gb|ABF38188.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10750] gi|209540823|gb|ACI61399.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] gi|304430704|gb|EFM33717.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 76 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Query: 1 MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + + I + + + R + + +A+ AG+ + + +R PS Sbjct: 1 MKEMAMEVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAM 55 Query: 60 KILAATNETICQLLDLPF 77 KI E + ++ L Sbjct: 56 KIAKVFQEPVEEVFRLVE 73 >gi|324009503|gb|EGB78722.1| helix-turn-helix protein [Escherichia coli MS 57-2] Length = 95 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 6/81 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + ++ E+ ++ LA+ +G+ + + G + I +I Sbjct: 1 MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54 Query: 64 ATNETICQLLDLPFSDGRTTE 84 A L + Sbjct: 55 ALGVRTEWLSSGIGPMRNDGQ 75 >gi|319938878|ref|ZP_08013242.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811928|gb|EFW08194.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 158 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGDNIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56 Query: 69 ICQ 71 Sbjct: 57 YVD 59 >gi|319757761|gb|ADV69703.1| transcriptional regulator [Streptococcus suis JS14] Length = 158 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 56 Query: 69 ICQ 71 Sbjct: 57 YVD 59 >gi|294498960|ref|YP_003562660.1| putative transcriptional regulator SinR [Bacillus megaterium QM B1551] gi|295704284|ref|YP_003597359.1| transcription regulator SinR [Bacillus megaterium DSM 319] gi|294348897|gb|ADE69226.1| probable transcription regulator sinR [Bacillus megaterium QM B1551] gi|294801943|gb|ADF39009.1| probable transcription regulator sinR [Bacillus megaterium DSM 319] Length = 111 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + ++ + LA +AG+ + + +R PS + + KI + N + Sbjct: 3 IGQRIRDLRTKQGISLTELANRAGVAKSYISSVERGIQL----NPSIQFLNKISTSLNVS 58 Query: 69 ICQLLDLPF 77 I +L+ P Sbjct: 59 IDRLIHEPM 67 >gi|291443072|ref|ZP_06582462.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291346019|gb|EFE72923.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 192 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/101 (9%), Positives = 34/101 (33%), Gaps = 5/101 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + H + LAR++G+ ++ ++ +R + P+ + ++ Sbjct: 14 RLAVRLADLRTEHGWSLDELARRSGVSRSTLSRLERCEV-----SPTATLLGRLCTVYGR 68 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 T+ +LL ++ ++ Sbjct: 69 TMSRLLMEVEAEPPPLVPAARQTVWRDEAAGFVRRSVSPPH 109 >gi|242243123|ref|ZP_04797568.1| bacteriophage transcriptional regulator [Staphylococcus epidermidis W23144] gi|242233471|gb|EES35783.1| bacteriophage transcriptional regulator [Staphylococcus epidermidis W23144] Length = 111 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 3/95 (3%) Query: 1 MTSFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M + S +KI+ E + R+ N+ LA G+ + + + R +++ Sbjct: 1 MGTKSARKIFSENLQRLMRNKNVDQKELAEAIGVTQPTISNWIKEVK--YPRIKRIQTLA 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 + + + + Sbjct: 59 DYFNVPKSELTEENFVVSKNQIAAHITPDVTEDEM 93 >gi|239507364|ref|YP_002939672.1| transcription regulator [Staphylococcus phage phiPVL-CN125] gi|238683989|gb|ACR54192.1| transcription regulator [Staphylococcus phage phiPVL-CN125] Length = 84 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +D +R T S A K G+ P+++N + + R I K L Sbjct: 10 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRDAF--RIAKTLD 58 >gi|228994922|ref|ZP_04154700.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] gi|228764824|gb|EEM13600.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] Length = 116 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I + + + +T L G+ + + ++ + P ES+ KI Sbjct: 2 IGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKG-----KKSPGRESLEKIADYFG 54 >gi|219852328|ref|YP_002466760.1| XRE family transcriptional regulator [Methanosphaerula palustris E1-9c] gi|219546587|gb|ACL17037.1| transcriptional regulator, XRE family [Methanosphaerula palustris E1-9c] Length = 184 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 4/145 (2%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I E +LT S LARKAG+ + + + ++ R + + I ++L +I Sbjct: 9 IRAKREMLDLTQSELARKAGVSQSMIARIEAGSVD--PRVGTLDKIIRVLNIAERSIVTA 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + ++ + + + + + I +A Sbjct: 67 AQVMHTPVQSIHPENQIASAVDIMEKNGISQLPVILDGVPVGC--ISESAILFAIEEQHA 124 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDIL 157 ++Q+ + S P + Sbjct: 125 HKSQNYLVRDFMESSFPTVPPDIDV 149 >gi|158348425|ref|YP_001522916.1| Predicted transcription regulator [Bacillus virus 1] gi|190410765|gb|ACE78285.1| predicted transcription regulator [Bacillus virus 1] Length = 78 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++T LA+ G + +K +R ++ R PS E ++ I + + + Sbjct: 5 LRDVRRSFDITQEELAKAVGTTRQTIHKIERGKLK---RAPSYELMYAIAQFFGKKVEDI 61 Query: 73 LDLPFSDGR 81 Sbjct: 62 FFTQVVTHE 70 >gi|50196919|ref|YP_052614.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165871721|ref|ZP_02216366.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167638961|ref|ZP_02397235.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170707968|ref|ZP_02898417.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|177653556|ref|ZP_02935730.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190566543|ref|ZP_03019460.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229601932|ref|YP_002865577.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] gi|254734209|ref|ZP_05191922.1| hypothetical protein BantWNA_03453 [Bacillus anthracis str. Western North America USA6153] gi|254753484|ref|ZP_05205520.1| hypothetical protein BantV_13483 [Bacillus anthracis str. Vollum] gi|254758581|ref|ZP_05210608.1| hypothetical protein BantA9_09739 [Bacillus anthracis str. Australia 94] gi|50082981|gb|AAT70122.1| hypothetical protein GBAA_1022 [Bacillus anthracis str. 'Ames Ancestor'] gi|164712622|gb|EDR18154.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167513091|gb|EDR88463.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170127128|gb|EDS96006.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|172081360|gb|EDT66434.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190562095|gb|EDV16063.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229266340|gb|ACQ47977.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] Length = 149 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 5/108 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + S LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +LL + + K++ + F + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKWKFFFDSLFMMGVFLFITKIVVWI 107 >gi|21223966|ref|NP_629745.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|3192004|emb|CAA19403.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 71 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 +A+ ++ + +T LA G+ T+ + + R P E++ I + Sbjct: 9 DALRQIRRQRGVTQYKLAASLGVHNTAISHYENGH-----RRPDVETLATIADVLGARMD 63 Query: 71 QL 72 Sbjct: 64 DF 65 >gi|148263542|ref|YP_001230248.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397042|gb|ABQ25675.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 91 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 5/43 (11%), Positives = 21/43 (48%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 S + + A+ + ++ L+ + + + G+D + ++ ++ Sbjct: 14 LSPESLGAALRKERKKKGLSQTDVGKSVGIDQPTISRVEKGNP 56 >gi|295108159|emb|CBL22112.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 110 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + ++N++ LA KAG+ S ++ + +R P ++ I A + Sbjct: 3 QNLGGRIAELLTQYNMSQRELADKAGITEVSMSRYIKG-----DRVPKGTTLANIATALH 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 T LL+ S E + +I L + Sbjct: 58 TTTDFLLNGEGSGTGDFESEYYQIHRLIARNASQMSP 94 >gi|150401456|ref|YP_001325222.1| helix-turn-helix domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150014159|gb|ABR56610.1| helix-turn-helix domain protein [Methanococcus aeolicus Nankai-3] Length = 162 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + E+ T LA++ G+ ++ +K +R +E ++ + + K L T Sbjct: 77 EDYGTVIKQAREKRGWTLKELAKQIGIKESTLHKIERNELEPEEKY--VKRLEKELNIT 133 >gi|124026420|ref|YP_001015535.1| putative signal peptidase [Prochlorococcus marinus str. NATL1A] gi|123961488|gb|ABM76271.1| putative signal peptidase [Prochlorococcus marinus str. NATL1A] Length = 125 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 9/88 (10%) Query: 140 HKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSI 193 + TSM ++GD++ I + GD ++ ++ K + Sbjct: 32 LRVVGTSMERTLKEGDLVTYKKLNPKNIDLEIGDIVVASHPKTKNKLIIKRIHRIYQNKF 91 Query: 194 DLMSLNCCY--PVDTVEMSDIE-WIARI 218 DL N + + +++ I ++ Sbjct: 92 DLRGDNSLSSTDSRELGLFELDLIIGKV 119 >gi|146311635|ref|YP_001176709.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145318511|gb|ABP60658.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 175 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 9/129 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT H + + + + S LA + G+ + +R P+ +++K Sbjct: 1 MTITQH--LATTLKTERQARGWSLSKLADETGVSKAMLGQIERNES-----SPTVSTLWK 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTV 118 I N + + +++ + + L+ S G + Sbjct: 54 IATGLNVPFSAFISPEEQPQPVFDPQQQAMVVKPLFPWDDTLKFDHFSITLAPGALSEST 113 Query: 119 GVPEIRSPH 127 H Sbjct: 114 PHEAGVVEH 122 >gi|329954215|ref|ZP_08295309.1| conserved domain protein [Bacteroides clarus YIT 12056] gi|328527921|gb|EGF54907.1| conserved domain protein [Bacteroides clarus YIT 12056] Length = 232 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 65/226 (28%), Gaps = 20/226 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + LT + GL + +K R + + I N Sbjct: 4 LKERLSHFIDYTGLTVQMFEKTVGLSNGAVSKM-----GDNTRRSTIDKISNFFHDLNTN 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--------GGFFDSGVFPTGNKWNTVGV 120 + G E I Y P S V + +G Sbjct: 59 WLLTGEGEMLIGEYPTGNEITIHKNYAPKSREIQYDYKLIPIVHIDSVGGMHSPNAIIGE 118 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPR 176 P+ + + D SM+P G +L+L + G+ +I+ Sbjct: 119 PQYIEGYAPFTDAKEGDICIIQSGNSMVPTCPSGSLLLLRQVLNWQEYFGYGNIFVIELT 178 Query: 177 TGDIVAK---VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 G + K I +S N P + + S I+ + +++ Sbjct: 179 DGRRITKEVSRYNENPNEYIWCISHNANVPDEELPKSMIKSVWKVI 224 >gi|304405777|ref|ZP_07387435.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304345020|gb|EFM10856.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 71 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + ++ + I + T LA + + +R R P + + I Sbjct: 3 NDQLAQRIRAFRKLKGFTQQQLAERLSVSVAVLGSLERGT-----RKPDPKLLANIAETL 57 Query: 66 NETICQ 71 + Sbjct: 58 GIDYDE 63 >gi|297162517|gb|ADI12229.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 193 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 10/167 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESIF 59 ++ + + + LAR+ G+ ++ ++ +R I G+ ++ Sbjct: 13 EARLAVRLAELRVERGWSLDELARRTGVSRSTLSRLERAEISPTAALLGKLCAAYERTMS 72 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++LA E QL+ EK + P G G G+ G + Sbjct: 73 RLLAEVEEEPPQLVRADRQAVWRDEKSGFTRRSVSPPHPGLRGELVEGILRPGADISY-D 131 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 P + I+ + + R GD L + Sbjct: 132 APPVPGLEQHIWVLDG---VLEVAVGGAAHELRAGDCLRFRLWDRSR 175 >gi|312114583|ref|YP_004012179.1| XRE family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311219712|gb|ADP71080.1| transcriptional regulator, XRE family [Rhodomicrobium vannielii ATCC 17100] Length = 477 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 5/99 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R+ E LT A GL + N+ ++ R + + +I A + L Sbjct: 10 LKRLREERGLTQIAFAEAIGLSASYLNQLEKNQ-----RPLTVPVLLRINATFGADMQLL 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 D + K+ P S + + P Sbjct: 65 SDGDEARMIADLKEVFSDPASGETVSLAEIREIAASMPA 103 >gi|24375356|ref|NP_719399.1| Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] gi|24350177|gb|AAN56843.1|AE015819_7 transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] Length = 75 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + ++ A+ +M + L+ LA +A +D + + +R + + + ++K Sbjct: 1 MKTLA-TELGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEVN-----LTLDMLYK 54 Query: 61 ILAATNETICQ 71 I + + Sbjct: 55 IAEELDCEPHE 65 >gi|167036463|ref|YP_001664041.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114889|ref|YP_004185048.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855297|gb|ABY93705.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927980|gb|ADV78665.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 129 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ +T LA G+ + + R P + + KI N + Sbjct: 2 LGKRIKELRKKKGITQKELASYLGISDRAVGYYESGQ-----RTPPPDILQKIADFFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 LL E E Sbjct: 57 TDYLLGRTNIYNPADEITEAVFDDPEL 83 >gi|110638814|ref|YP_679023.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110281495|gb|ABG59681.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 99 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KI I +T LA K G + ++ + E R ++ KI+ Sbjct: 36 KIGALIQEARIEKGMTQEELAIKCGTTKSYISRIENNIKEVR-----ISTLQKIVE 86 >gi|312961080|ref|ZP_07775585.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] gi|311284738|gb|EFQ63314.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] Length = 113 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + +I I + NLT +A + G+ + ++ +R +E S + ++ Sbjct: 7 TQAQIGRMIAKHRTERNLTQEEVAERLGIGSEAISRLERGVVE-----LSVVKLMQLADI 61 Query: 65 TNETICQ 71 + + + Sbjct: 62 FDCRMDE 68 >gi|308067869|ref|YP_003869474.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857148|gb|ADM68936.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 157 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 4/91 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + + LA AG+ + ++ + P ++ KI A + + Sbjct: 7 GTYLKQQREHKQWSINQLADAAGISNSQISRIENGLRG----IPKPSTLRKIAEALSVSY 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 +++ G ++ L Sbjct: 63 TEMMKAAGYWGDDDSTEQNSHELYRSTVPEW 93 >gi|302064024|ref|ZP_07255565.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 120 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 5/99 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + L+ + LA G D ++ +R P E + +I N Sbjct: 11 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGST-----LPGIEQLIRIATVFNVA 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 +LL RT ++ S + + Sbjct: 66 PGELLPGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEM 104 >gi|228912155|ref|ZP_04075870.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228942096|ref|ZP_04104636.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975025|ref|ZP_04135584.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981664|ref|ZP_04141959.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228777776|gb|EEM26048.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228784546|gb|EEM32566.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817430|gb|EEM63515.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228847492|gb|EEM92431.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|324328858|gb|ADY24118.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942746|gb|AEA18642.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 109 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I + + + + LA G++ T + + R PS E++ I TN Sbjct: 3 ETIGSRIKEVRKSLKMKQNELADAVGVNYTMISLYESN-----KREPSRETVENIARVTN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + ++ L E +K + Sbjct: 58 VSADYIMGLSKHKTFDEETSKKITDDVEDI 87 >gi|229162462|ref|ZP_04290423.1| Helix-turn-helix domain protein [Bacillus cereus R309803] gi|228620941|gb|EEK77806.1| Helix-turn-helix domain protein [Bacillus cereus R309803] Length = 277 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAISKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|255655682|ref|ZP_05401091.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451687|ref|ZP_06893419.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296878931|ref|ZP_06902930.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|296259450|gb|EFH06313.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296430044|gb|EFH15892.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 183 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 55/142 (38%), Gaps = 6/142 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I + ++R+ NL+ LA +G+ ++ ++ P+ +I+KI Sbjct: 1 MSINTIIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSN-----PTVNTIWKIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + N +L+ P ++ K + ++ + ++ + + + + E Sbjct: 56 SGLNVPYTAILEQPQNETFIVSKTDIDVQVSENKDYRLYCYYPNTPTRNFELF-QMELEE 114 Query: 123 IRSPHNGIYAIQTQDTRHKTQD 144 S + ++ ++Q+ + Sbjct: 115 GHSYTSVGHSEKSQEYIMIIEG 136 >gi|118464968|ref|YP_879634.1| XRE family transcriptional regulator [Mycobacterium avium 104] gi|118166255|gb|ABK67152.1| transcriptional regulator, XRE family protein [Mycobacterium avium 104] Length = 474 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + R+ E LT LAR GL + N+ + Sbjct: 7 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRP 44 >gi|21244773|ref|NP_644355.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21110470|gb|AAM38891.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 66 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E + + L + G+ + N + + PS F+I E+I Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 HVFLYEE 64 >gi|312794292|ref|YP_004027215.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181432|gb|ADQ41602.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 144 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + E++ T L+ +G+ ++ ++ +R + P+ +I I A N Sbjct: 2 DIGKRIVELREKYGFTRYKLSELSGVSQSALSEIERGIKQ-----PTITTIENICRAFNL 56 Query: 68 TICQLLDLPFSDGRTTEKK 86 T+ + + Sbjct: 57 TLADFFAEKEPEIPPEVRS 75 >gi|312864429|ref|ZP_07724662.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100150|gb|EFQ58361.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 75 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S K+ + + E+ LT LA G+ + + PS E K Sbjct: 1 MAK-SKIKVITNLKEIREKGGLTQQELAEAVGVRRETILHLENNRYN-----PSLELALK 54 Query: 61 ILAATNETICQLLDLPF 77 I ++++ ++ L Sbjct: 55 IAQVFDKSVEEIFRLNE 71 >gi|302547803|ref|ZP_07300145.1| putative Helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302465421|gb|EFL28514.1| putative Helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 197 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 8/83 (9%), Positives = 27/83 (32%), Gaps = 5/83 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + T + L+ G+ ++ ++ + R P+ E + + Sbjct: 13 VGPRLRALRRERGATLAQLSETTGISLSTLSRLESGQ-----RKPTLELLLPLAKTYGVQ 67 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91 + +L+ P + + Sbjct: 68 LDELVGAPPTGDPRIHPRPFTRH 90 >gi|238026932|ref|YP_002911163.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237876126|gb|ACR28459.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 189 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 16/127 (12%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ L+ LA +AGL + +K +R PS ++ A + + Q Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLST-----PSVAVAMQLAQALHVEVGQ 59 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L + + + + + + R Sbjct: 60 LFSADGDEQA-----------ITVVRADERLRMSRAPDDAQSGYEVIAAEAGRKRLLPFM 108 Query: 132 AIQTQDT 138 D Sbjct: 109 IRPAHDF 115 >gi|222152205|ref|YP_002561380.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113016|emb|CAR40321.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 135 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 10/71 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT FS + + + + NL+ LA + + + +K + P E++ K Sbjct: 1 MTPFSSQ-----LKILRQAKNLSQEALAEQLFISRQAISKWENGDAT-----PDLENLVK 50 Query: 61 ILAATNETICQ 71 + ++ + Sbjct: 51 LAEIFKVSLDE 61 >gi|254171970|ref|ZP_04878646.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4] gi|214033866|gb|EEB74692.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4] Length = 191 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I ++ + +T LARKAG+ K + ++ P + +IL A E Sbjct: 10 SVIRKIRKELGITQEELARKAGVTQAYIAKLESGRVD-----PRLSTFNRILQALLECKK 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + + + +GNK + Sbjct: 65 ALPKARDVMSSPVISVKPYEKVETVIKLMNSHNISQIPVISGNKVVGSVTERSLVRRSLE 124 Query: 131 YAIQTQDTRHKTQDT 145 Y + D Sbjct: 125 YEDIYDRKVLEVMDE 139 >gi|213583433|ref|ZP_03365259.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 61 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G ++ + ++ K L + G ++L+ N + V++ + Sbjct: 1 GQVVVARID-DEVTVKRLKKQ-GNKVELLPENSEFTPIVVDLRE 42 >gi|167755999|ref|ZP_02428126.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] gi|167703991|gb|EDS18570.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] Length = 384 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 2/110 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I ++ L+ LA + + + +K + + K L T Sbjct: 3 LGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNI--DKIMDVAKALEITLNE 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + + E ++ L + G + Sbjct: 61 LLGLEEDSNDEYAKLESILNQVVLTQNNEIIRNKKYLKMGLVIGTGIFII 110 >gi|154497045|ref|ZP_02035741.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] gi|150273444|gb|EDN00572.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] Length = 94 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 5/72 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + ++ + + +T LA + + + PS FKI Sbjct: 25 EGLKNRLEELRKARGMTQEELAEALEVSRQTVGSLENGRYN-----PSILLAFKIARLFE 79 Query: 67 ETICQLLDLPFS 78 TI ++ Sbjct: 80 TTIEEVFLYEEQ 91 >gi|308068399|ref|YP_003870004.1| transcriptional regulator y4dJ [Paenibacillus polymyxa E681] gi|305857678|gb|ADM69466.1| Putative HTH-type transcriptional regulator y4dJ [Paenibacillus polymyxa E681] Length = 112 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 5/107 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + L+ L K G + + +R S +I KI A + Sbjct: 10 VGARIRALRKEKGLSQESLGEKGGFHFSYIGQIERGEKN-----VSLINIAKIANALDVN 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + QL D + T+ +E ++ S Sbjct: 65 LIQLFAYVNEDIKVTKHEEGIQEIVNILQKSSPEKVRLARNVIREII 111 >gi|301632617|ref|XP_002945378.1| PREDICTED: hypothetical protein LOC100487190 [Xenopus (Silurana) tropicalis] Length = 81 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 19/51 (37%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 M + + +A+ ++ + S LA + G+D + + R Sbjct: 1 MEDVVSQALGQALRKLRTERGWSQSDLALRVGMDRNYLSLIELGRNSPSVR 51 >gi|257139965|ref|ZP_05588227.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 185 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 13/162 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ T LA AGL + +K +R PS K+ A + Q Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSV-----PSIAVALKLSKALQVDVEQ 58 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L T + + + S + V P R + + Sbjct: 59 LFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPP-RDYVSSAF 117 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + S+ + I++ GD + Sbjct: 118 REHEGEEMLFVHKGSVEIEFPNE-------TIKLKTGDSVYF 152 >gi|167896507|ref|ZP_02483909.1| DNA-binding protein [Burkholderia pseudomallei 7894] Length = 202 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 6/119 (5%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 TS + ++ E I R+ LT L+R AG+ + ++ +R P+ +++ Sbjct: 18 TSATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRL 72 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 A ++ +L P + +IP L + + G + + Sbjct: 73 TNALGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130 >gi|328953267|ref|YP_004370601.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453591|gb|AEB09420.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] Length = 180 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 5/101 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + R+ + ++LT LA +A L ++ +R PS ++ IL Sbjct: 2 KIGEKLKRLRQANSLTQEELANRAYLTKGFISQLERDQT-----SPSIATLKDILDVLGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 ++ D + + Sbjct: 57 SLADFFRDLPQDRVVYPQSARITTSNSTTACRVEVLVPDAQ 97 >gi|327466846|gb|EGF12364.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 194 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + ++ LA K + N + R P E + + + + Sbjct: 83 ERLKKLRKAAGMSQKNLALKLNTSQQNINYWENGQ-----RNPKREKLIETADFFDVS 135 >gi|329116048|ref|ZP_08244765.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906453|gb|EGE53367.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 236 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E+ LT + LA+K G+ + + RN+ S E + ++ Sbjct: 8 GAKLTEVREKRGLTKTELAKKLGVSQQYISDIELN----RNKTVSDEFVTRLAIYFQTKK 63 Query: 70 CQLLDLPFSDGRTTEKKEKEI 90 + D + + Sbjct: 64 VEFYDYYENINFNFKPSGSRC 84 >gi|261879523|ref|ZP_06005950.1| transcriptional regulator [Prevotella bergensis DSM 17361] gi|270333840|gb|EFA44626.1| transcriptional regulator [Prevotella bergensis DSM 17361] Length = 73 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E+ L+ LA +AGL T +R R PS I+KI Sbjct: 15 HKVRTLREQQGLSQEKLAERAGLHRTYIGMVERLE-----RNPSLVCIYKIANGLGVHAS 69 Query: 71 Q 71 Q Sbjct: 70 Q 70 >gi|288932481|ref|YP_003436541.1| XRE family transcriptional regulator [Ferroglobus placidus DSM 10642] gi|288894729|gb|ADC66266.1| transcriptional regulator, XRE family [Ferroglobus placidus DSM 10642] Length = 183 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 3/105 (2%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-NETICQ 71 I R ++ LT LA G+ + + ++ + + IFK+L + + Sbjct: 8 IKRRRKKLGLTQKKLAELVGVSQPLIARLESGDLDPKLSL--IKRIFKVLDELEGKMTAK 65 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + P + K++ + + S G Sbjct: 66 KIMNPNVIFASPNDTAKKVIEIMWEKGISQIPVIERGKVVGTVTE 110 >gi|227534216|ref|ZP_03964265.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188150|gb|EEI68217.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 344 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I LT LA K G+ + +K ++ +P + + Sbjct: 3 IDQVIRERRLALGLTQEELADKIGVSAPAVSKWEKRVS-----YPDITLLPALARILGTD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + LL + + E + +G Sbjct: 58 VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93 >gi|227363208|ref|ZP_03847341.1| helix-turn-helix domain protein [Lactobacillus reuteri MM2-3] gi|325681627|ref|ZP_08161148.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|325682688|ref|ZP_08162204.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|227071748|gb|EEI10038.1| helix-turn-helix domain protein [Lactobacillus reuteri MM2-3] gi|324977038|gb|EGC13989.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|324979092|gb|EGC16038.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 157 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + + E I ++ E + + LAR+ ++ T+ NK ++ + Sbjct: 13 LNDDILREKIIKLREERGWSQAELARRINMNNTALNKVEKGTRK 56 >gi|160885068|ref|ZP_02066071.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483] gi|298483202|ref|ZP_07001382.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] gi|156109418|gb|EDO11163.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483] gi|295084669|emb|CBK66192.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] gi|298270719|gb|EFI12300.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] Length = 134 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 6/111 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I+R+ +T + L G+ + +K ++ E + +I +A T Sbjct: 12 LGRKIERVRRLRGMTQAELGDLLGITKQAVSKIEQTEK------FDDERLGEIASALGVT 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L + E + S +G FP Sbjct: 66 VDGLKNFNEETILYNTNNFYENCGVKSAVSNTGNNQTFNSFPVEQVIEIFE 116 >gi|329937439|ref|ZP_08286997.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329303315|gb|EGG47202.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 232 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 11/120 (9%), Positives = 34/120 (28%), Gaps = 9/120 (7%) Query: 1 MTSFSHKK-------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 M + + + I + + LA +A L ++ ++ + R Sbjct: 1 MLPMTQEDDGDLDGLVRRRIRALRVAQGWSLEELAARARLSQSTLSRIETGRR--RLALD 58 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 ++ + L + + + + + + ++ L G P + Sbjct: 59 QLVTLARALDTSLDQLVETAVDDVVSHPSVDAAHGQLSWLLKAQPGVSVVRQRMTNPPPD 118 >gi|312897912|ref|ZP_07757326.1| helix-turn-helix protein [Megasphaera micronuciformis F0359] gi|310621007|gb|EFQ04553.1| helix-turn-helix protein [Megasphaera micronuciformis F0359] Length = 125 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 3/124 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I+E I R+ + +N++ LA+K G ++ NK + I+ + L T Sbjct: 2 ETIYERIRRLRQENNMSQDKLAKKTGYTSRSTINKIEAGKID--ISRAKIKVFADALGVT 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + D T + + L P F S + V + E Sbjct: 60 PAYLMGWEDESEQGYYTDPEVAEYAEELRTNPKYRLLFNASKDLSKEDIDFVVDMIERLK 119 Query: 126 PHNG 129 G Sbjct: 120 AREG 123 >gi|306826019|ref|ZP_07459355.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431735|gb|EFM34715.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 166 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + + + LA + + S +K + + P E I ++ Sbjct: 3 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T LL S+ +TE +E Y+ S G + Sbjct: 58 TTDYLLLDENSEKGSTEVSLEEDKDKYYKEVKSFGLWQVIYI 99 >gi|227502499|ref|ZP_03932548.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|306835073|ref|ZP_07468116.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|227076772|gb|EEI14735.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|304569054|gb|EFM44576.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 469 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 50/201 (24%), Gaps = 17/201 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ + LA GL + N+ + R + + +I Sbjct: 6 VGSRLRQLRRERDLSQASLAGTLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + + L P + V V Sbjct: 61 ATFFSRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDVHRRYRNVR 120 Query: 129 GIYAI-------QTQDTRHKTQDTSMLPLYRKGDILI--LNSAIQVNCGDRLLI---KPR 176 ++ + + + L+ + GD + Sbjct: 121 DKLSLATDTRRTSESAAALSMPHDEVRDFFYARQNYLDGLDHHAEELAGDLGVSGFGIRN 180 Query: 177 TGDIVAKVLISRRGRSIDLMS 197 T +A L + G I+L + Sbjct: 181 TEQALANRLREKHGVEIELTA 201 >gi|256376030|ref|YP_003099690.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920333|gb|ACU35844.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 512 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ I + + + LA ++ N+ ++ G S E + +I A Sbjct: 12 RVGGLIRASRRQRGWSQAQLATAVSTSQSAINRIEQGGQN-----LSLEMLSRISEAL 64 >gi|210634736|ref|ZP_03298264.1| hypothetical protein COLSTE_02189 [Collinsella stercoris DSM 13279] gi|210158676|gb|EEA89647.1| hypothetical protein COLSTE_02189 [Collinsella stercoris DSM 13279] Length = 125 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 5/117 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 AI +M ++ ++ + A + G+ + +R PS E I+ + + Sbjct: 4 AIQQMRKKMRISQTEFAERIGVSLRTVGSWERGESV-----PSAEQIWNCAVVLGCSPNE 58 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +L + F+ ++ + + + + Sbjct: 59 ILCWDDERPHEDSGEHLTSEEREIVGCYRESTFERKKSLMQTARDSADMSKEMAKRS 115 >gi|192359188|ref|YP_001982024.1| putative transcriptional regulator [Cellvibrio japonicus Ueda107] gi|190685353|gb|ACE83031.1| Putative transcriptional regulator [Cellvibrio japonicus Ueda107] Length = 87 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + + + + L+ LA++AG+ T+ + + S + + Sbjct: 1 MTTL--ADVADLLRSVRREAGLSQEALAQRAGVSRTTVARMETLAKG----DMSVSVLLR 54 Query: 61 ILAATNET 68 +L Sbjct: 55 LLETAGYD 62 >gi|168209895|ref|ZP_02635520.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|170711951|gb|EDT24133.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] Length = 268 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 K+ E + + +R L+ LA K G+ + +K + Sbjct: 2 KLAEKLQLIRKREGLSQEDLAEKLGISRQAVSKWESGQSVP 42 >gi|160933079|ref|ZP_02080468.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] gi|156868153|gb|EDO61525.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] Length = 152 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 17/45 (37%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 + ++ +R L+ +A K G+ + +K + R Sbjct: 2 NLGNSLFHARKRRGLSQEDVAEKLGVSRQTISKWETGETIPDIRQ 46 >gi|160881041|ref|YP_001560009.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429707|gb|ABX43270.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 200 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 17/38 (44%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 +K+ + I ++ + H T +A + + +K + Sbjct: 4 EKVGKLIKQLRKEHGYTQQQVANALNISNKTVSKWENG 41 >gi|319744698|gb|EFV97043.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 168 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 12 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 66 Query: 69 ICQ 71 Sbjct: 67 YVD 69 >gi|332652748|ref|ZP_08418493.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517894|gb|EGJ47497.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 413 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 5/38 (13%), Positives = 12/38 (31%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + I + L+ L G+ + +K + Sbjct: 3 LGTRIAALRRERGLSQEALGELVGVSRQAVSKWESDSA 40 >gi|300088555|ref|YP_003759077.1| XRE family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528288|gb|ADJ26756.1| transcriptional regulator, XRE family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 145 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 12/92 (13%) Query: 1 MTSFSH-------KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 M + S ++ + R LT LA ++G+ + + +R R+P Sbjct: 1 MDTLSGTVQTTLPAELGAVLRRRRLEIPLTLQELADRSGISVSHIGRIERGE-----RFP 55 Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEK 85 S + + ++ +L L Sbjct: 56 SAKVLLRLACHLQYEENELFALAGYLTPPESP 87 >gi|253751715|ref|YP_003024856.1| antidote epsilon protein [Streptococcus suis SC84] gi|253755571|ref|YP_003028711.1| antidote epsilon protein [Streptococcus suis BM407] gi|251816004|emb|CAZ51621.1| antidote epsilon protein [Streptococcus suis SC84] gi|251818035|emb|CAZ55824.1| antidote epsilon protein [Streptococcus suis BM407] Length = 158 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 56 Query: 69 ICQ 71 Sbjct: 57 YVD 59 >gi|283796605|ref|ZP_06345758.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] gi|291076025|gb|EFE13389.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] Length = 177 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + LT LA +A L ++ +R PS ++ IL T Sbjct: 3 IGAKLKELRVLKGLTQEELADRAELSKGFISQVERDLT-----SPSIATLMDILQCLGTT 57 Query: 69 ICQLL 73 I + Sbjct: 58 IGEFF 62 >gi|223043346|ref|ZP_03613392.1| conserved domain protein [Staphylococcus capitis SK14] gi|314934995|ref|ZP_07842354.1| putative transcriptional regulator [Staphylococcus caprae C87] gi|222443135|gb|EEE49234.1| conserved domain protein [Staphylococcus capitis SK14] gi|313652925|gb|EFS16688.1| putative transcriptional regulator [Staphylococcus caprae C87] Length = 67 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R + LA+KAG+ + + +R PS + KI N Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAIKIARIFN 53 >gi|170748375|ref|YP_001754635.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654897|gb|ACB23952.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 208 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 10/144 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60 ++ + I R+ + +NL+ S LA ++G+ + ++ +R R SI + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A E + + +E + + ++ + + + G ++ Sbjct: 86 LAAGDEEPFIEKTSRADTPILVSEDGKVRLAIIGWLKTIEWLQWYEVTADPGGVLDSDPH 145 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 ++ + Sbjct: 146 QRGSVE---SLSVTEGAFEVEIGG 166 >gi|220925537|ref|YP_002500839.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950144|gb|ACL60536.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 124 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I E LT LA KAG+ ++ + EG + +++ K+ A N T+ Sbjct: 66 NRIRVWREHRGLTAKALAEKAGIAQPFLSQIETGRREG-----TIDTLRKLAQALNLTLD 120 Query: 71 Q 71 Sbjct: 121 D 121 >gi|157149791|ref|YP_001450164.1| Cro/CI family transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|28461301|gb|AAO43830.1| Cro/CI family transcriptional regulator [Streptococcus gordonii] gi|157074585|gb|ABV09268.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii str. Challis substr. CH1] Length = 69 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + + E +T LA K G+ + + PS E KI Sbjct: 3 KILTNLKAIREDARMTQQELADKIGVRRETILHLENNRYN-----PSLEMALKIARVFGM 57 Query: 68 TICQLLDLPF 77 ++ + L Sbjct: 58 SVEDIFRLNE 67 >gi|157158980|ref|YP_001463318.1| transcriptional repressor DicA [Escherichia coli E24377A] gi|157081010|gb|ABV20718.1| putative transcriptional regulator DicA [Escherichia coli E24377A] Length = 131 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 5/76 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ LT LA G S K + E P +++ + A + Sbjct: 4 DRLSQRRKQLGLTQQQLADMVGRSSVSVFKWESGQNE-----PKGQNLLALANALKCSAT 58 Query: 71 QLLDLPFSDGRTTEKK 86 LL T + Sbjct: 59 WLLFGDEDQAPTPVDE 74 >gi|223932178|ref|ZP_03624182.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223899159|gb|EEF65516.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 158 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 56 Query: 69 ICQ 71 Sbjct: 57 YVD 59 >gi|259909005|ref|YP_002649361.1| Predicted transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|224964627|emb|CAX56141.1| Predicted transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|283479016|emb|CAY74932.1| putative DNA-binding protein [Erwinia pyrifoliae DSM 12163] Length = 187 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/162 (9%), Positives = 46/162 (28%), Gaps = 10/162 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58 + +++ + + + + LA G+ S ++ +R + ++ Sbjct: 6 TEQRLARRLAELRLEKSWSLETLAELTGISRASLSRIERAETSPTATLLNRLCNAYGLTM 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++L+ + QL+ + + P G + + Sbjct: 66 SRLLSEVEQGGMQLMRGDSQSVWHDAQSGYRRRSVSPPAQAFHAELVEARLDGGARIDY- 124 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 +P + I+ + + +GD L + Sbjct: 125 DMPSLAGLEQHIWMLGG---VLEFTMDERHWRLEQGDCLRFH 163 >gi|237808823|ref|YP_002893263.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] gi|237501084|gb|ACQ93677.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] Length = 186 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/170 (8%), Positives = 40/170 (23%), Gaps = 12/170 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I + + ++ + A G+ + +R P+ +++K Sbjct: 1 MQDLIR-HIAATLQLLRKQRGWSLDKTAAATGVSKAMLGQIERGES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + L+ + + G + V + Sbjct: 55 IATGFETSFSTFLEPSVQLQDIWRTSDSSAVQHRNKHDIAAKAVIPFDPQFGFELLLVTL 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQ 164 P + +A + GD + +++ Sbjct: 115 PAGIEHLSAAHADGVTEHVIPLDGTLEIMSDGQWHPLDAGDAMRFDASRP 164 >gi|167582937|ref|ZP_02375811.1| DNA-binding protein [Burkholderia thailandensis TXDOH] Length = 185 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 13/162 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ T LA GL + +K +R PS K+ A + Q Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSV-----PSIAVALKLSKALQVDVEQ 58 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L T + + + S + V P R + + Sbjct: 59 LFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPP-RDYVSSAF 117 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + S+ + I++ GD + Sbjct: 118 REHEGEEMLFVHKGSVEIEFPNE-------TIKLKTGDAVYF 152 >gi|153954530|ref|YP_001395295.1| hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] gi|146347388|gb|EDK33924.1| Hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] Length = 100 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + + LT + LA+ G+ ++ + + PS E + K+ A N Sbjct: 2 QFGERIKSLRLSNKLTATQLAKDIGVTREYLSRLENNA-----KSPSFELLEKLCGALNI 56 Query: 68 TICQLLDLPFSDGRTTE 84 T+ + SD Sbjct: 57 TLAEFFKTDSSDIIPEH 73 >gi|42782397|ref|NP_979644.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42738322|gb|AAS42252.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 374 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 17/194 (8%), Positives = 50/194 (25%), Gaps = 14/194 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 N +I +L+ + F ++ + Sbjct: 56 YFNISIDELICYTPQMEPEDIRDLYHRLAEAFSEKPFDEVMVECREIIKKYYSCFPL--- 112 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182 + + + + + L + D L+ + + Sbjct: 113 ---LLQMGLLFINHHMLTEDTDKRIDMLEEAMNLFSRVQEE--SDDVSLVKEAVSFQATC 167 Query: 183 KVLISRRGRSIDLM 196 +++++ + L+ Sbjct: 168 YLILNKPNEVLQLL 181 >gi|77408024|ref|ZP_00784773.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413847|ref|ZP_00790025.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160087|gb|EAO71220.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173386|gb|EAO76506.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 112 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + + LT +A + G ++ + + + PS E++ K + N + Sbjct: 4 ERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESG-----KKKPSAETLEKFASFFNVS 56 >gi|255279936|ref|ZP_05344491.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255269709|gb|EET62914.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 642 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 6/103 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + T + +A K + +++ + R P E++ +I + ++ Sbjct: 7 EYLTMYRRQRGYTQAEMAEKLEISRSTYTNYETGN-----RAPDFETLIQIGDILDCSLD 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +L + +E +Y G Sbjct: 62 ELFGRDRGGSARYPDRVREAAPVYRTN-TEYRAKPERRLAIGQ 103 >gi|146318591|ref|YP_001198303.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320791|ref|YP_001200502.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145689397|gb|ABP89903.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145691597|gb|ABP92102.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] Length = 168 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 12 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 66 Query: 69 ICQ 71 Sbjct: 67 YVD 69 >gi|159043477|ref|YP_001532271.1| hypothetical protein Dshi_0925 [Dinoroseobacter shibae DFL 12] gi|157911237|gb|ABV92670.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12] Length = 66 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR---SIDLMSLNCCYPVD 205 P GD ++++ A + + + +VAK L ++ ++S N Y Sbjct: 4 PTLLDGDNVLVDMARRAPNPPGIFVLDDGMGLVAKRLEHIPNSDPPAVRVISDNGFYSPY 63 Query: 206 TV 207 + Sbjct: 64 EL 65 >gi|94266062|ref|ZP_01289781.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453384|gb|EAT03812.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 109 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 2/104 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + L+ LA + G+ + + +R R + + IL + Sbjct: 2 NVGQRIRSRRQVLGLSQRELAARLGITFQAIQRWERGET--FPRKETLPQLLAILEVGAD 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + L D T E P Sbjct: 60 WLVGTPSLAGPDVSTIPPDVLEAVRDPRIQQIVRTAAKVLKQPA 103 >gi|19746353|ref|NP_607489.1| transcriptional regulator [Streptococcus pyogenes MGAS8232] gi|19748548|gb|AAL97988.1| putative transcriptional regulator [Streptococcus pyogenes MGAS8232] Length = 73 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 7/77 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + R + + +A+ AG+ + + +R PS K Sbjct: 1 MAM--EVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAMK 53 Query: 61 ILAATNETICQLLDLPF 77 I E + ++ L Sbjct: 54 IAKVFQEPVEEVFHLVE 70 >gi|317506907|ref|ZP_07964679.1| hypothetical protein HMPREF9336_01050 [Segniliparus rugosus ATCC BAA-974] gi|316254835|gb|EFV14133.1| hypothetical protein HMPREF9336_01050 [Segniliparus rugosus ATCC BAA-974] Length = 148 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 EA+ E +T LAR AG+ T+ + P+ +++ K+ A + Sbjct: 12 EALKAAREERKITVQDLARCAGVTYTTVWTWENG-----KHAPNIDTLVKVAAYLEIPVA 66 Query: 71 QLLDLPF 77 QL+ +P Sbjct: 67 QLVSIPE 73 Score = 36.3 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 E + + LT LA+ AG+ T +K +R Sbjct: 76 ETLGDLRVLAGLTQPQLAKAAGITTTVLSKLERGETP 112 >gi|326203817|ref|ZP_08193679.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985915|gb|EGD46749.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 69 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 14/42 (33%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 I I ++ E L LA G+ T +K + Sbjct: 5 IKNNIQKLRESRGLNQEDLAEVLGVTRTYLSKLENQKFSPGP 46 >gi|299821483|ref|ZP_07053371.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299817148|gb|EFI84384.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 180 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 57/190 (30%), Gaps = 20/190 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ +R PS ++F IL Sbjct: 2 EIGKKIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIVTLFDILEVLGS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + D + + + F G+ + P N+ V + H Sbjct: 57 SPKAFFDEEEHTQKVIYGEGEHT----FFEDEEKGYRIKWLVPESNEKEMEPVLLEIAAH 112 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLI 186 + + + + +T + +++ G+ + +I Sbjct: 113 SAFKSFEPSLS--ETFGYVLEGEI----TILIGKNAYIAKNGEAVYFSATDEH----RII 162 Query: 187 SRRGRSIDLM 196 ++ + L+ Sbjct: 163 NQTDQPAKLI 172 >gi|218247058|ref|YP_002372429.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|218167536|gb|ACK66273.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] Length = 534 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 4/47 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + +I A +R ++ LA K G + +R + Sbjct: 478 LTSDQILAA----RQRQGMSQRALAEKLGKSQSWIRDLERGRFSAKP 520 >gi|167856042|ref|ZP_02478786.1| helix-turn-helix domain protein [Haemophilus parasuis 29755] gi|219870567|ref|YP_002474942.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167852837|gb|EDS24107.1| helix-turn-helix domain protein [Haemophilus parasuis 29755] gi|219690771|gb|ACL31994.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 114 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I +AI + + LT + LA G+ + ++ +R P+ + ++ + Sbjct: 10 QTIGQAIAKYRQASGLTQAQLAEILGISNDAVSRMERGKTI-----PTVLRLLELSEIFH 64 Query: 67 ETICQ 71 + Sbjct: 65 CEVAD 69 >gi|220924825|ref|YP_002500127.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949432|gb|ACL59824.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 218 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 61/192 (31%), Gaps = 26/192 (13%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I R+ + +NL+ S LA ++G+ + ++ +R P+ +I+++ A + Sbjct: 35 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETN-----PTLATIWRLSQALDV 89 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + + + EK + + G +G T V Sbjct: 90 S-IERVLATGDEEPFIEKSSRADTPILVSEDGKVKLAITGWIKTVEWLQWYDVTAEPGGE 148 Query: 128 NGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 A + + + + + +TG+ + Sbjct: 149 LDSDAHQRGSVECLSV--------LEGEFEVEVA---------GAVQRVKTGETL--RYR 189 Query: 187 SRRGRSIDLMSL 198 R ++ +S Sbjct: 190 CDRPHTVRCISD 201 >gi|78221537|ref|YP_383284.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78192792|gb|ABB30559.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 117 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 26/88 (29%) Query: 3 SFSHKKI--------------------WEAID---RMAERHNLTPSGLARKAGLDPTSFN 39 +HKK+ + +D + +T + +A + G ++ Sbjct: 1 MLTHKKLKARALERPDVKAEYDRLDEEFAFLDEFLKARAAAGVTQAEVAERIGTTQSAIA 60 Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNE 67 + + G PS ++ K A Sbjct: 61 RLESG---GGKHSPSLATLQKYAHALGC 85 >gi|56421430|ref|YP_148748.1| hypothetical protein GK2895 [Geobacillus kaustophilus HTA426] gi|56381272|dbj|BAD77180.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 180 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 44/151 (29%), Gaps = 19/151 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I+ I + ++ +LT L+ K GL + ++ +R + S+ KI A Sbjct: 2 EEIYRKIRDIRKQRDLTLKELSEKTGLSVSFLSQVERGTT-----SLAITSLKKIADALE 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----------FPTGNKWN 116 I + + + ++++ + + + G + Sbjct: 57 VPITDFFENEANQNFVVKVEKRKPFRIEGSSAEYTRLAGNFNGRSLEPLIVTLAPGLVQD 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 V Y ++ Sbjct: 117 NV---FSHPGEEFYYVLEG-AVIFNVDGKEY 143 >gi|325107542|ref|YP_004268610.1| hypothetical protein Plabr_0967 [Planctomyces brasiliensis DSM 5305] gi|324967810|gb|ADY58588.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM 5305] Length = 116 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 1/104 (0%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + ++ LT LA + + +K + + + +PS + K+ A + Sbjct: 2 QFGERVRELRKQRGLTQQKLAVLLDVSLSYISKVENERLNAGD-YPSEVFVLKLAKALDA 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +LL L ++ +E P + + + Sbjct: 61 DEDELLLLTDRVPAAIRQRIRERPDAFRELAKADDSLLDQFLAM 104 >gi|293402167|ref|ZP_06646305.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304274|gb|EFE45525.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 60 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I+ + ++ +T LA++ G+ +S + KR + PS + + + I Sbjct: 5 IEVLMKKKGVTAYRLAKETGIPQSSISDWKRGRCK-----PSVKMLKILADYFGVDIKD 58 >gi|260844501|ref|YP_003222279.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|260854336|ref|YP_003228227.1| putative repressor protein [Escherichia coli O26:H11 str. 11368] gi|257752985|dbj|BAI24487.1| predicted repressor protein [Escherichia coli O26:H11 str. 11368] gi|257759648|dbj|BAI31145.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|323152493|gb|EFZ38776.1| helix-turn-helix family protein [Escherichia coli EPECa14] Length = 130 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 10/97 (10%), Positives = 26/97 (26%), Gaps = 6/97 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ + N+ S L R+ G+ P S + P + + K+ + + Sbjct: 5 KRLQQVLQELNINQSELGRRLGVKPQSVQGWLKGV------MPRMDKLEKLAELSQHPVH 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + G + Sbjct: 59 WFFMEEETLGDKMAVSSNDNQPQLTEQQRKIISLLDE 95 >gi|212696472|ref|ZP_03304600.1| hypothetical protein ANHYDRO_01010 [Anaerococcus hydrogenalis DSM 7454] gi|212676565|gb|EEB36172.1| hypothetical protein ANHYDRO_01010 [Anaerococcus hydrogenalis DSM 7454] Length = 65 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 I ++ + + L LA++ G+ + + + PS E KI Sbjct: 5 IKKLRKENGLRQEDLAKELGVSRQTIIAIENNKYD-----PSLELAIKI 48 >gi|160944796|ref|ZP_02092023.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] gi|158443980|gb|EDP20984.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] Length = 120 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I + I +T LA + G+ T + + PS +++ I+ Sbjct: 1 MVDYADIGKRIRTCRLAKGMTQEQLANEVGVVVTHISHIETGNSV-----PSLKTLIDII 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 A + + +LL + + L + Sbjct: 56 NALDCSADELLCIEIKKAKPVFDSWMTEQLADCSADEAKI 95 >gi|330862695|emb|CBX72841.1| hypothetical protein YEW_CE09110 [Yersinia enterocolitica W22703] Length = 178 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 5/73 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + ++ A + G + ++ +R G S ++I Sbjct: 25 MKKTLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 79 Query: 61 ILAATNETICQLL 73 + A N Q Sbjct: 80 LANALNVEPWQFF 92 >gi|322812212|pdb|2XJ3|A Chain A, High Resolution Structure Of The T55c Mutant Of Cylr2. gi|322812213|pdb|2XJ3|B Chain B, High Resolution Structure Of The T55c Mutant Of Cylr2 Length = 66 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + E+ ++ S LA + + N ++ PS + KI N Sbjct: 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYN-----PSLQLALKIAYYLNCP 56 Query: 69 ICQLLDLP 76 + + Sbjct: 57 LEDIFQWQ 64 >gi|315649148|ref|ZP_07902239.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275464|gb|EFU38821.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 120 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 7/114 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I++ I+ + E +T G+ +F KR PST + +I A + Sbjct: 2 QSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTT-----PSTNKLIEIAAFFS 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L+ S + E + + + Sbjct: 57 VSLDWLIIGKGSPNTRVRESRGEYEVDPEAADLAMSGLAENEK--EFIREYIEF 108 >gi|302523789|ref|ZP_07276131.1| transcriptional regulator [Streptomyces sp. AA4] gi|302432684|gb|EFL04500.1| transcriptional regulator [Streptomyces sp. AA4] Length = 141 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + ++ L++ AG+ ++ +R R PS E + +I Sbjct: 20 DIGEYIRQQRSSAKISLRQLSKLAGVSNPYLSQIERGV-----RKPSAEILQQIAKGLRI 74 Query: 68 T 68 + Sbjct: 75 S 75 >gi|240103012|ref|YP_002959321.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] gi|239910566|gb|ACS33457.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] Length = 195 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 5/135 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I ++ + +T LARKAG+ K + ++ P + +IL A E Sbjct: 14 SIIRKIRKELGITQEELARKAGVTQAYIAKLESGKVD-----PRLSTFNRILQALLECKR 68 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + + + +G+K + Sbjct: 69 ALPKAKDVMSSPVISVKPYEKVETVIKLMNSHNISQIPVISGSKVVGSVTERSLVRRSLE 128 Query: 131 YAIQTQDTRHKTQDT 145 Y + D Sbjct: 129 YEDIYDRKVLEVMDE 143 >gi|319425158|gb|ADV53232.1| DNA polymerase V subunit, UmuD [Shewanella putrefaciens 200] Length = 135 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 12/123 (9%) Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDI 156 P P S + + + SM GDI Sbjct: 1 MRVIPIPARAGITGFESPAAEYTQLGLSLDELLIDHPSSTFLAFAEGDSMQGKGIFDGDI 60 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWI 215 LI++ V GD ++ + V K++ R + L S N + + + Sbjct: 61 LIIDRHETVRNGDVIVASLNR-EFVCKIIDI--PRRLLLSS-NQQHQPVIIHEYDEFSIE 116 Query: 216 ARI 218 I Sbjct: 117 GVI 119 >gi|332363209|gb|EGJ40994.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 205 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFAV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82 >gi|329934425|ref|ZP_08284504.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] gi|329306021|gb|EGG49876.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] Length = 277 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 46/171 (26%), Gaps = 24/171 (14%) Query: 7 KKIWEAIDRMAER----------------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 ++ + ER L LA AGL P+ + + ++ GR+ Sbjct: 9 NQLGSFLRSRRERIDAATAGVVDSTRRRVKGLRREELALLAGLSPSYYARLEQ----GRD 64 Query: 51 RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDS 106 R PS E + + + L E + S + D Sbjct: 65 RNPSREVLRALADVLRLDDTERTHLWSLAMPALPPAGNEGAPAPAVRPGVLSLLERWADL 124 Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 F G + + + N ++ D +Y + + Sbjct: 125 PAFVVGPGRDVLAGTPLAERVNPAWSPGHNLIAFTFLDPRSRTVYPDWEEI 175 >gi|323701996|ref|ZP_08113665.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323533082|gb|EGB22952.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 180 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 19/151 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I E I + + NLT L+ K GL + ++ +R + S+ KI A N Sbjct: 2 EEICEKIRSLRNQQNLTLKELSEKTGLSVSFLSQVERGTS-----SLAITSLKKIADALN 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS----------GVFPTGNKWN 116 I + +K+E++ + + G + Sbjct: 57 VPITSFFTSYQNQNFLVKKEEQKAFRIEGSTAEYIRLGGEFSGKVLEPLLVTLDPGQTRD 116 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 V Y ++ Sbjct: 117 NV---FSHPGEEFYYVLEG-AVIFNVDGKEY 143 >gi|302672233|ref|YP_003832193.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396706|gb|ADL35611.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 364 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 5/94 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I R ++ +T S LA + + ++ + +P + I + Sbjct: 3 KLNENIKRYRQQKCMTQSQLADVFNVSEQAISRWENGNT-----YPDITLLPAIADYFHV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 TI +L+ + +K E Sbjct: 58 TIDELMGMESYKDEREIEKVFEQCRENDRKGHVH 91 >gi|294500289|ref|YP_003563989.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350226|gb|ADE70555.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 66 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + ++ LA+ G+ + N + + PS F++ A T+ Sbjct: 4 NRIKELRKSKRMSQDELAKVCGVSRQTINAIENNKYD-----PSLTLAFQLAAELGATVD 58 Query: 71 QLLDLP 76 +L Sbjct: 59 ELFLFH 64 >gi|227432755|ref|ZP_03914721.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351491|gb|EEJ41751.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 256 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + +++ LT A K + S + +R +P+TE + I+ + Sbjct: 18 EIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKG-----YPTTEMMLLIIEKFDL 72 Query: 68 TICQLLDLPFSDGRTTEKK 86 + + P + +++ Sbjct: 73 PLDFFIIPPTNSCEDNDEE 91 >gi|154499861|ref|ZP_02037899.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] gi|150271459|gb|EDM98716.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] Length = 409 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 20/212 (9%), Positives = 50/212 (23%), Gaps = 25/212 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG---------RNRWPSTESIF 59 + + I + + L+ GL G+ + +K + R S + Sbjct: 3 LGQRIAALRKEKGLSQEGLGELVGVSRQAVSKWEADKTVPDVNNCIAMSRVFGISLAGLL 62 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLL------YFPPSGSGGFFDSGVFPTGN 113 ++ + + + S+ + + L P G Sbjct: 63 EVEESLGDGAERTGGEQLSEEQLAMVEAVVTRYLEKRKRRIRPGPLILGGILVLTVVLLP 122 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR-------KGDILI--LNSAIQ 164 W + E R + + + ++ ++ A Sbjct: 123 AWEWLTQLERRMSSISREMEELEWKIVSGVGDKVTATLEAESSLVTDWSCILSAVDLAAN 182 Query: 165 VNCGDRLLIKPRTGD-IVAKVLISRRGRSIDL 195 D + G+ L G + + Sbjct: 183 TATYDIAVTMKEVGEDTTVSFLARSGGDQVTV 214 >gi|154248374|ref|YP_001419332.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162459|gb|ABS69675.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 203 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I R+ + +NL+ S LA ++G+ + ++ +R P+ +++++ A + Sbjct: 20 QLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETN-----PTLATVWRLSQALDM 74 Query: 68 T 68 T Sbjct: 75 T 75 >gi|306833652|ref|ZP_07466779.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424422|gb|EFM27561.1| transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 168 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 12 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 66 Query: 69 ICQ 71 Sbjct: 67 YVD 69 >gi|221209564|ref|ZP_03582545.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221170252|gb|EEE02718.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 200 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 14/151 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + +T S LA + G ++ +R P+ + I A Sbjct: 29 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 83 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--------GVPEIR 124 L + E +Y+ + + + + P Sbjct: 84 YSLSKPRSIPWVTRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGASSGERPVDD 143 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 S G + ++ + D Sbjct: 144 SDEQGGFVLEGEL-TIWVDGDDTPVTLGPND 173 >gi|254478231|ref|ZP_05091612.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035827|gb|EEB76520.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] Length = 218 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ E L +A+ G+ P+++ ++ R PS E + K+ N + Sbjct: 93 QRLRQLREEKGLLQKDVAKILGITPSAYGYYEQG-----KREPSMEVLKKLSDFFNVS 145 >gi|257060127|ref|YP_003138015.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|256590293|gb|ACV01180.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 534 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 4/47 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + +I A +R ++ LA K G + +R + Sbjct: 478 LTSDQILAA----RQRQGMSQRALAEKLGKSQSWIRDLERGRFSAKP 520 >gi|14520844|ref|NP_126319.1| repressor protein, putative [Pyrococcus abyssi GE5] gi|5458060|emb|CAB49550.1| Helix-turn-helix repressor protein family [Pyrococcus abyssi GE5] Length = 73 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + E++ LT LAR G+ + ++ + PS FKI I Sbjct: 3 NRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYD-----PSLRLAFKIARFFGVRIE 57 Query: 71 QLLDLPFSDGRTTEKK 86 + + + Sbjct: 58 DIFIYEEELTPRGDNR 73 >gi|77409837|ref|ZP_00786476.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77171552|gb|EAO74782.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 148 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + LT LA + G+ + + + + + + + K Sbjct: 1 MNRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKP--DKAKELAKYFN 52 >gi|76787968|ref|YP_330681.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77406878|ref|ZP_00783904.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] gi|76563025|gb|ABA45609.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77174510|gb|EAO77353.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] Length = 204 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + + LT LA + G+ + + + + + + + K Sbjct: 1 MNRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKP--DKAKELAKYFN 52 >gi|327393585|dbj|BAK11007.1| putative transcriptional regulator [Pantoea ananatis AJ13355] Length = 194 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 13/126 (10%) Query: 1 MTSFSHKKIWEA-IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M S +I ++ I R+ + NLT + LA+++G+ +K +R PS Sbjct: 1 MDKTSKNQIVDSDIARLLLKHRKARNLTVTELAQRSGVSQAMISKVERGTS-----SPSA 55 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + ++ A N T+ +L + + S G + P G Sbjct: 56 TILSRLANAMNITLSKLFAELELRQNSLVLFADQQQHWTDEQS---GITRWSLSPAGACP 112 Query: 116 NTVGVP 121 + V Sbjct: 113 ELIRVE 118 >gi|323693266|ref|ZP_08107484.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502749|gb|EGB18593.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + +T LA + + + + +R E P ++ KI + Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVSE-----PDLNTLKKICYLFGVHM 65 Query: 70 CQLLDLPFSDGRTTEKKEKEI 90 + T EKKEK Sbjct: 66 DDFAKEVITKMETYEKKEKRQ 86 >gi|289664753|ref|ZP_06486334.1| putative DNA binding protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669222|ref|ZP_06490297.1| putative DNA binding protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 66 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 5/69 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E + L + G+ + N + + PS F+I E+I Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57 Query: 71 QLLDLPFSD 79 + Sbjct: 58 HVFLYEDGH 66 >gi|302381785|ref|YP_003817608.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192413|gb|ADK99984.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 67 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + N + + LA G+ + N + + PS FKI + Sbjct: 3 NRLKVLRAERNWSQADLAAALGVSRQTVNALETGRYD-----PSLPLAFKIARVFEQP 55 >gi|256377557|ref|YP_003101217.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921860|gb|ACU37371.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 737 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 47/166 (28%), Gaps = 4/166 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ ++ R LT L+ +G+ + ++ + + R + + L T Sbjct: 4 ELGPSLRRARRSAGLTQEQLSAASGISVRTISRLENG-ADENVRLDTLRLLADALGLTQA 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +L+ + + G + + +P Sbjct: 63 ERRELMAGVVAGEAAVPTGPLAVAAQQLAEVLRGRWLREVEARAAHHP--FPLPVRWRAA 120 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDI-LILNSAIQVNCGDRLL 172 G + + P+ GD+ +++ V G ++ Sbjct: 121 PGELVDHWANVLGAPPGAQVRPVALAGDLGQVVDVYRSVPSGRLVV 166 >gi|77745351|gb|ABB02576.1| putative transcriptional regulator [Lactobacillus reuteri] Length = 234 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + LT +A G+ + ++ + R P E+ K+ + T+ Sbjct: 9 NRIAELRKEKGLTLQQVADAIGVGNNTISRYETG-----KREPKLETWQKLSNYFDVTVY 63 Query: 71 QLLDL 75 L Sbjct: 64 YLQGY 68 >gi|319793072|ref|YP_004154712.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315595535|gb|ADU36601.1| transcriptional regulator, XRE family [Variovorax paradoxus EPS] Length = 503 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E L+ LA++ GL P+ N+ ++ R + + ++ A I Sbjct: 9 RLRSLREERGLSQLALAQQLGLSPSYLNQIEQNQ-----RPLTVPVLLRLHATLGVDIQA 63 Query: 72 LLDLPF 77 + Sbjct: 64 FSEDEE 69 >gi|307545886|ref|YP_003898365.1| hypothetical protein HELO_3296 [Halomonas elongata DSM 2581] gi|307217910|emb|CBV43180.1| K09384 hypothetical protein [Halomonas elongata DSM 2581] Length = 796 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 60/252 (23%), Gaps = 50/252 (19%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQL 72 D R + A++AG D S + K+ E + + I K T T Q Sbjct: 540 DDFVIRDGRVVTDAAKRAGQDR-SVHGYKKMLKELPEHARALADQIIKNTYRTLMTRGQK 598 Query: 73 LDLPFSDGRTTEKKEKEIPL-----LYFPPSGSGGFFDSGVFPTGNKWNTVGVP------ 121 ++ T + + + D P + V Sbjct: 599 GCYVYATDPETREYFAAFARAQAATEHADLAEEAETLDGLHLPIVTRDEAVPFERHVPVY 658 Query: 122 -----------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI- 163 E + + SM G + + Sbjct: 659 DLSIAAGEFSEMQIADAEHWVELPDVMRASPDLFVSRVVGESMNRRIPNGAWCLFRTNPG 718 Query: 164 QVNCGDRLLIKPRTGD-------IVAKVLISRR--------GRSIDLMSLNCC--YPVDT 206 G ++++ R + K S + + I L Y Sbjct: 719 GTRQGKVVVVQHRAIEDPDHGGSFTVKQYQSEKVEEYGEFVNQRIVLKPQTNAFGYKDIV 778 Query: 207 V--EMSDIEWIA 216 + E+ D++ I Sbjct: 779 LEDELEDLKVIG 790 >gi|304405221|ref|ZP_07386881.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346100|gb|EFM11934.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 127 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 5/83 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + E+ T + G+ + + ++ R P TE++ K N Sbjct: 2 NIGTRIAHLREQRGWTQEQTSHSLGISRAALSHYEKN-----RREPDTETLTKFADLFNV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90 TI L+ + + + +E Sbjct: 57 TIDFLVGRTNKSEQVLDPQVREF 79 >gi|304384795|ref|ZP_07367141.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328989|gb|EFL96209.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 123 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+ + I + E +LT + LAR+ +D ++ NK + R S+E + K+ Sbjct: 3 QNKLSKRIVDLRESMDLTQTELARRLKIDKSAMNKIENGT-----RKVSSEELNKLSDIF 57 >gi|303239088|ref|ZP_07325618.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593426|gb|EFL63144.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 67 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K++ + I + +R ++ LA AG ++ + R PS + ++ I Sbjct: 1 MPIRKEVGQNIRKERDRKRMSQEELAGLAGTTQEYISRIENGT-----RNPSMDLLYNIA 55 Query: 63 AATNET 68 A Sbjct: 56 GALKCP 61 >gi|294817496|ref|ZP_06776138.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326446175|ref|ZP_08220909.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294322311|gb|EFG04446.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 765 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + + + + L+ LA AGL + +R G R S +++ + Sbjct: 1 MTRSTPGEFGQRLRALRLGAGLSQEQLAHSAGLSVRALANMERGRTTGPQRQ-SVQALAR 59 Query: 61 IL 62 L Sbjct: 60 AL 61 >gi|269216373|ref|ZP_06160227.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130632|gb|EEZ61710.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 103 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + +++ + LT S LA +AG+ + +G + Sbjct: 1 MKVTTTEQLGSIVRNARAELGLTQSQLAAEAGVSRRLIAAVE----DGSAANVGFGRVLA 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 I +A ++C DLP E++ E LL + Sbjct: 57 ICSALGISMCLGEDLPSRPLPPAEERLSEKALLAGSAA 94 >gi|300774987|ref|ZP_07084850.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300506802|gb|EFK37937.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 123 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 5/86 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +R+N + + +A K + ++NK + + PS + + KI Sbjct: 3 LGTKLKQLRQRNNWSQAEVAYKLDISQPAYNKWESDQGK-----PSLDKLGKIAEVFEIE 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY 94 I L + + + E + Sbjct: 58 IQDLFESEGNVIISNNTFENSNIVYP 83 >gi|255283609|ref|ZP_05348164.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265871|gb|EET59076.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 111 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I I + E +T LA K G+ +R + P E++ K Sbjct: 1 MEDKTMHGIGRRIQKCREDAKMTQEQLAEKVGISWNYLGAIERET-----KTPKLETLIK 55 Query: 61 ILAATNETICQ 71 I+ A + Sbjct: 56 IVNALGVSADD 66 >gi|210632447|ref|ZP_03297375.1| hypothetical protein COLSTE_01272 [Collinsella stercoris DSM 13279] gi|210159542|gb|EEA90513.1| hypothetical protein COLSTE_01272 [Collinsella stercoris DSM 13279] Length = 83 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I +D M + +T + LA++ GL + + K ++G R+ S + L Sbjct: 2 QIVMRLDVMMAKRKMTVTQLAKETGLSAVNITRIKNGRLQG-IRFSSLVLLCDALHCKPG 60 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 + + + E+ Sbjct: 61 DLIDYMSDEEFEEEFGYPPER 81 >gi|134099786|ref|YP_001105447.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912409|emb|CAM02522.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 192 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 19/40 (47%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + + ER L+ S +AR++G+ + ++ + Sbjct: 2 LAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNP 41 >gi|78485682|ref|YP_391607.1| XRE family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363968|gb|ABB41933.1| transcriptional regulator, XRE family [Thiomicrospira crunogena XCL-2] Length = 198 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 1 MTSFSHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M+ H+ I + I+ ++ LT + +A ++G+ +K + + PS + Sbjct: 1 MSEKEHQTLDLHIGKIINNARKKQGLTIADIAEQSGISRGMLSKIENGQV-----SPSLD 55 Query: 57 SIFKILAATN 66 S+ KI Sbjct: 56 SLLKISRTLG 65 >gi|89896340|ref|YP_519827.1| hypothetical protein DSY3594 [Desulfitobacterium hafniense Y51] gi|89335788|dbj|BAE85383.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 201 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 18/46 (39%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 M + K+ I ++ + LT +A + + +K +R Sbjct: 1 MITMDCAKVGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLG 46 >gi|307243365|ref|ZP_07525525.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] gi|306493257|gb|EFM65250.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] Length = 104 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 5/98 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + N+T + LA + L ++ +K + +E PS + + + + Sbjct: 4 LGNRIKLLRKEFNMTQTDLANRLNLTKSNISKYENGIVE-----PSLDILRSMSDLFEVS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + LL + F Sbjct: 59 VDYLLGRTNIRNHPETFAAHTDEDMSDEAKAELENFKE 96 >gi|258507369|ref|YP_003170120.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257147296|emb|CAR86269.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259648728|dbj|BAI40890.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 100 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+ + L+ LA K+G+ T+ + ++ S E++ KI A Sbjct: 44 AVLEARQNAGLSQQELANKSGVPKTTIARIEQGNNT------SIETLTKIANALG 92 >gi|256379464|ref|YP_003103124.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923767|gb|ACU39278.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 79 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 6/84 (7%) Query: 3 SFSHKKIWEAIDRMA-ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ +I + R +T + LA + G+ + ++ PS E F+I Sbjct: 1 MVKPTRVTNSIRSLRFARDGMTQAELAERVGVTRQTVIAIEQGRY-----SPSLEMAFRI 55 Query: 62 LAATNETICQLLDLPFSDGRTTEK 85 + + P D E Sbjct: 56 ARVFKVPLDDVFHYPEGDVGEGET 79 >gi|238916178|ref|YP_002929695.1| hypothetical protein EUBELI_00212 [Eubacterium eligens ATCC 27750] gi|238871538|gb|ACR71248.1| Hypothetical protein EUBELI_00212 [Eubacterium eligens ATCC 27750] Length = 98 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + AI N+T LA + G++ +K + R PS + ++ Sbjct: 29 DVIRAIVDARTSQNMTQKELAERTGINQADISKLENGT-----RNPSVNLLKRLAD 79 >gi|284033097|ref|YP_003383028.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283812390|gb|ADB34229.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 801 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + LT GLA KAGL + + +R R P ++ + A Sbjct: 6 LGDLLRQFRTAAGLTQGGLAEKAGLSEQAVSLLERGTR----RRPRIATVHALAEALG 59 >gi|225873562|ref|YP_002755021.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793885|gb|ACO33975.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 63 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + LA++ G+ S N + + PS FK+ Sbjct: 3 NRLRDLRAERGWSQADLAQELGVSRQSVNAIETGRFD-----PSLPLAFKLARLFG 53 >gi|254475876|ref|ZP_05089262.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214030119|gb|EEB70954.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 286 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 4/109 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 ++R L+ S LAR G+D ++ ++ + R P+ + AA + Sbjct: 17 RLNRALADSGLSQSALARAIGVDRSTISQLL---TDEGARLPNAHVVGACAAALGVSADW 73 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPS-GSGGFFDSGVFPTGNKWNTVG 119 LL L + + + P + F G K V Sbjct: 74 LLSLSERPENAADLVAASLTMSAAPRALVDERIFGWHQEAEGYKIRHVP 122 >gi|168212390|ref|ZP_02638015.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170716178|gb|EDT28360.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 180 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ ++ LT LA G+ + + + + + E++ L ++ Sbjct: 3 IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALATSLKLDLKS 60 Query: 69 ICQLLDLPFSDGRTTEKKE 87 L +E Sbjct: 61 FFDDTLLEEDYYLKPLSEE 79 >gi|168206199|ref|ZP_02632204.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] gi|170662344|gb|EDT15027.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] Length = 263 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + NL+ LA K+GL + + + R P+ + KI A Sbjct: 2 NVGDRIKYFRKAENLSQDELASKSGLSRNAISNYELN-----KRQPNIVVLKKIADALKV 56 Query: 68 TICQ 71 I Sbjct: 57 DIDD 60 >gi|118468644|ref|YP_885309.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118169931|gb|ABK70827.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 478 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/209 (7%), Positives = 43/209 (20%), Gaps = 37/209 (17%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRSERGFSQAALAQMLDISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS--- 125 + ++ L D V + Sbjct: 61 ATFFSPQDDTRLVAELREVTLDRDLGASDVDLTEVADMVASHPKLARAMVNLHRRYRLAT 120 Query: 126 -----PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---------GD-- 169 Y+ + + + + + GD Sbjct: 121 TQLAAATEDRYSDGSGSGAITMPHEEVRDYFYERQNYLHELDTAAEDLTARMRMHSGDLA 180 Query: 170 -------------RLLIKPRTGDIVAKVL 185 R++ + G+ V Sbjct: 181 AELTNRLTSVHGVRVVRRIDMGETVLHRY 209 >gi|9634643|ref|NP_038317.1| ORF16 [Streptococcus phage 7201] gi|7248473|gb|AAF43509.1|AF145054_17 ORF16 [Streptococcus phage 7201] Length = 183 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 34/137 (24%), Gaps = 10/137 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I ++ + LT + LA G+ + +++G S + + ++ +I Sbjct: 1 MNRIKQLRKSRKLTQAELADLIGVTKRTIIHWEKYGFS------SADKLQELADCFEVSI 54 Query: 70 CQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 D+ + K + + G + P Sbjct: 55 SYLLDYDINNTFSELITKINEWAISHGLDKGNPKIEWMKVTEEVGEIRDVFLRPSDFENP 114 Query: 128 NGIY--AIQTQDTRHKT 142 AI Sbjct: 115 EMALKDAIGDSIVTLVV 131 >gi|83720019|ref|YP_443629.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83653844|gb|ABC37907.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 80 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 12/76 (15%) Query: 1 MTSFSHKK-------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 M + S + + AI R+ + L+ LA AG+D + + +R Sbjct: 1 MPNLSSSRQHPTLVALGRAIRRIRKDRGLSQEQLALTAGIDVSYLGRVERGDNNA----- 55 Query: 54 STESIFKILAATNETI 69 S ++ I A T+ Sbjct: 56 SVLALHYIAEALGMTM 71 >gi|227873147|ref|ZP_03991438.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227840978|gb|EEJ51317.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 300 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 KI + I + +T LA K G+ S +K +R Sbjct: 5 KIGKYISEKRKNLGMTQKQLAEKIGMSDKSVSKWERGI 42 >gi|182416964|ref|ZP_02625290.2| putative phage repressor [Clostridium butyricum 5521] gi|237666135|ref|ZP_04526122.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379140|gb|EDT76642.1| putative phage repressor [Clostridium butyricum 5521] gi|237658225|gb|EEP55778.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 198 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + E NL+ L+++ G ++ + + I R E + K L Sbjct: 9 EIVARIKKRREELNLSYEDLSKRTGFGSSTLQRYETGAIN-RIPIDRFEELAKGLEIEPY 67 Query: 68 TICQLLDLP 76 + + Sbjct: 68 KLMGWDEDY 76 >gi|166030836|ref|ZP_02233665.1| hypothetical protein DORFOR_00516 [Dorea formicigenerans ATCC 27755] gi|166029418|gb|EDR48175.1| hypothetical protein DORFOR_00516 [Dorea formicigenerans ATCC 27755] Length = 138 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQ 71 I + + N+T + LA++ G+ + + G R S E + +I + + Sbjct: 4 IKELRKEKNITVAELAKELGISQSMLTNYENG--NGTPRDESIWEKLSQIFGVSKSHVMG 61 Query: 72 LLDLPF 77 L Sbjct: 62 LTTDIE 67 >gi|116754686|ref|YP_843804.1| XRE family transcriptional regulator [Methanosaeta thermophila PT] gi|116666137|gb|ABK15164.1| transcriptional regulator, XRE family [Methanosaeta thermophila PT] Length = 239 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 4/105 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + ++ + L+ G+ P+ + + GR R P + KI+ A + Sbjct: 29 GETLRKWRRNFGISQTELSNYLGISPSVISDYE----SGRRRSPGILIVSKIIDALLKID 84 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + + + + Sbjct: 85 ELRGCNVLRAYESMFGDMVGLSAICSVCEYARPVTLAEFMAEIDA 129 >gi|330469393|ref|YP_004407136.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328812364|gb|AEB46536.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 186 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I A+ + +R ++ + LAR+AG+ ++ ++ + PS E+++ + A + Sbjct: 12 IAAALRQERQRVGISLTELARRAGIAKSTLSQLEAGLGN-----PSMETLWALCVALDIP 66 Query: 69 I 69 Sbjct: 67 F 67 >gi|312126603|ref|YP_003991477.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776622|gb|ADQ06108.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 119 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 5/87 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + L+ L + + + + +R P+ E++ K+ TI Sbjct: 3 NRIRELRLERGLSQEELGKVLNVSGRTIGHYENG-----SREPTPEALNKLADFFGVTID 57 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97 LL + + ++ Sbjct: 58 YLLCRTDVRSTEKQDTKDKLQTPADVN 84 >gi|270291965|ref|ZP_06198180.1| conserved hypothetical protein [Streptococcus sp. M143] gi|270279493|gb|EFA25335.1| conserved hypothetical protein [Streptococcus sp. M143] Length = 165 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + + + LA + + S +K + + P E I ++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T LL S+ +T +E Y+ S G + Sbjct: 57 TTDYLLLDENSEKASTAVILEEDKDKYYKEVKSYGLWQMIYI 98 >gi|251778373|ref|ZP_04821293.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082688|gb|EES48578.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 160 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + E +LT L + G+ ++ K + G R S ++ K L + Sbjct: 2 EIKDIIRKRREELDLTYEQLGKIVGVGKSTVRKWETGI-IGNLRSDSILALAKGLNLSPS 60 Query: 68 TICQLLDLPFSD 79 T+ + + Sbjct: 61 TLMGWTEEENTY 72 >gi|239934199|ref|ZP_04691152.1| putative telomere-associated protein [Streptomyces ghanaensis ATCC 14672] gi|291442643|ref|ZP_06582033.1| telomere-associated protein [Streptomyces ghanaensis ATCC 14672] gi|291345538|gb|EFE72494.1| telomere-associated protein [Streptomyces ghanaensis ATCC 14672] Length = 748 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 22/80 (27%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 R+ + H LT +A + + + + R P E+ ++L E Sbjct: 25 KRLRQAHGLTLDEVAAALKVRRATVSGWESAKKPTEPRGPEREAYARLLKQLAELYPAPS 84 Query: 74 DLPFSDGRTTEKKEKEIPLL 93 + P Sbjct: 85 AMEGPTAPPVPANLTAPPAP 104 >gi|269123363|ref|YP_003305940.1| helix-turn-helix domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314689|gb|ACZ01063.1| helix-turn-helix domain protein [Streptobacillus moniliformis DSM 12112] Length = 207 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 64/213 (30%), Gaps = 21/213 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + + N+ LA+ G+ P N + R S + I KI+ + Sbjct: 5 GEVICKYLKIKNINQIFLAKNLGITPQYVNGIIKN-----KRSASKKVIDKIIKFLKISD 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + + K+ + + + + G Sbjct: 60 EDIDMIKKYEIFKKTGVIKKEAVNIKIEAIYTDYGYVEEYKEGLII--------LEEFGD 111 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--NCGDRLLIKPRTGDIVAKVLIS 187 IY+ + + ++ + GD +++ + ++ + +I + Sbjct: 112 IYS---DCYIIRIETENLN-KFCYGDYVVIKKEKDILTEYFNKYFLVKIDDEIDFCKIEK 167 Query: 188 RRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 + L LN + ++ IE I I+ Sbjct: 168 I-DDKLLLTYLNKNKGKKIIRVNKKIEIIGTII 199 >gi|237718064|ref|ZP_04548545.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|293370031|ref|ZP_06616598.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|299147755|ref|ZP_07040818.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|229452705|gb|EEO58496.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292634949|gb|EFF53471.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|298513938|gb|EFI37824.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 134 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 6/111 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I+R+ +T + L G+ + +K ++ E + +I +A T Sbjct: 12 LGRKIERVRRLRGMTQAELGDLLGITKQAVSKIEQTEK------FDDERLGEIASALGVT 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + L E + S +G FP Sbjct: 66 VDGLKSFNEETILYNTNNFYENCGVKSAVSNTGNNQTFNSFPVEQVIEIFE 116 >gi|167377813|ref|XP_001734554.1| hypothetical protein [Entamoeba dispar SAW760] gi|165903891|gb|EDR29282.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 125 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Query: 2 TSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 T HK++ I R + +LT LA+K P + + PS + Sbjct: 55 TPLVHKQVSHKVSLEIQRARQEKHLTQKELAQKINEKPQTIADYESGRAI-----PSQQV 109 Query: 58 IFKILAATN 66 + K+ Sbjct: 110 LAKLERVLG 118 >gi|163732391|ref|ZP_02139837.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161394689|gb|EDQ19012.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 71 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ + + ++ + GLA + GL T + +R R P+ + +I A Sbjct: 4 RQRVGRNLKKYRKQAGFSQEGLALECGLHRTYVSGVERGV-----RNPTVVVLERIAEAL 58 >gi|75910246|ref|YP_324542.1| molybdate metabolism transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703971|gb|ABA23647.1| transcriptional regulator of molybdate metabolism, XRE family [Anabaena variabilis ATCC 29413] Length = 376 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 2/133 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + R ++ LA AG+ + + + T + K L E Sbjct: 6 NICNNIKSIRTRLGMSQQDLANIAGVTRQTISGVESGQYA--PSVAITLRLAKALGCQVE 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L D K L + GG + + + +P Sbjct: 64 NLFWLEDDLPEIEAVLAKPVPTGQQLRVSLAKVGGQWIAYPLVGKEAFRMEMIPADGRAE 123 Query: 128 NGIYAIQTQDTRH 140 + + + Q Sbjct: 124 SQTHTNKVQVRLL 136 >gi|42525956|ref|NP_971054.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41816006|gb|AAS10935.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 91 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 8/70 (11%) Query: 3 SFSHKKIWEAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 F ++ I+R+ + L+ LA +A + N + R PS +++ Sbjct: 1 MFLREQQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETG-----KRTPSLDTLL 55 Query: 60 KILAATNETI 69 KI A N Sbjct: 56 KICHALNINP 65 >gi|325265475|ref|ZP_08132198.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029333|gb|EGB90625.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 206 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 5/84 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ ++ NLT LA + + T+ +K + +P+ ES+ I TI Sbjct: 5 EKLQQLRKKKNLTQEQLAEQLYVSRTAVSKWESGRG-----YPNIESLKCISKLFEVTID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLY 94 +LL + + +Y Sbjct: 60 ELLSSDELITLAECENRSNMKKIY 83 >gi|260618475|gb|ACX47365.1| XRE [Acinetobacter johnsonii] Length = 103 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + +AI + + NLT L + G+ +K + + R E+I K+ A N Sbjct: 32 ELLGDAIKQARKERNLTQEELGKLVGVQKAQISKLENSLTDAR-----FETIIKVFKALN 86 >gi|239995272|ref|ZP_04715796.1| putative phage repressor [Alteromonas macleodii ATCC 27126] Length = 95 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 3/67 (4%) Query: 139 RHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGDIVAKVL-ISRRGRSIDL 195 + +SMLP GD + + G +++K T ++ K + + L Sbjct: 4 IMRVTGSSMLPSLSDGDFVCAMRWPFRWLRSGQIVVVKSSTYGVIIKRVDHVNTDGTFTL 63 Query: 196 MSLNCCY 202 N + Sbjct: 64 TGDNKAH 70 >gi|291299563|ref|YP_003510841.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568783|gb|ADD41748.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 186 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I A+ R +R L+ S +A++AG+ ++ ++ + P E+++ + A N Sbjct: 10 EVIAHALRRERDRAGLSLSEVAKRAGIAKSTLSQLEAGSGN-----PGVETLWALSVALN 64 Query: 67 ETI 69 Sbjct: 65 VPF 67 >gi|228477777|ref|ZP_04062405.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250469|gb|EEK09683.1| conserved domain protein [Streptococcus salivarius SK126] Length = 69 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E + +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIKTNLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYN-----PSLEMALKIA 55 Query: 63 AATNETICQ 71 N+ + + Sbjct: 56 QVFNKQVEE 64 >gi|259908398|ref|YP_002648754.1| transcriptional repressor DicA [Erwinia pyrifoliae Ep1/96] gi|224964020|emb|CAX55526.1| HTH-type transcriptional regulator DicA [Erwinia pyrifoliae Ep1/96] gi|283478343|emb|CAY74259.1| HTH-type transcriptional regulator dicA; Repressor protein of division inhibition gene dicA [Erwinia pyrifoliae DSM 12163] Length = 133 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 5/85 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + I E I + T LA+ + S ++ +R E + ++ K Sbjct: 1 MKNLT---IGERIRNRRKEMKFTQRSLAKALKISHVSVSQWERDDSEPTGKNLF--ALTK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEK 85 IL T + T Sbjct: 56 ILQCTPTWVLFGDQNQSPQEPTDTP 80 >gi|186475021|ref|YP_001856491.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184191480|gb|ACC69445.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 90 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 5/73 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ +++ R+ N + LA + LD + +R R S +++ K+ A Sbjct: 14 RQQLADSLRRLRAERNWSQEELAARCELDRSFVAHVERGA-----RNISLDNVEKLANAF 68 Query: 66 NETICQLLDLPFS 78 I L Sbjct: 69 GVGIADLFLRRDP 81 >gi|170742019|ref|YP_001770674.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196293|gb|ACA18240.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 201 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 14/162 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + LT +A + G+ ++ +R + + +I Sbjct: 22 LGEQIRALRKIKGLTLQQIAGEIGVSIGYLSQIERNRSK-----LPIGVLKRIATILGVQ 76 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPH 127 + + G + + P N V + I Sbjct: 77 LSWFFQPQTLGPPEEQDFIVRAGRRRRMSFTGTGIAEELLSPNLNGPLEVLLSTIAPGSD 136 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + Y+ + T D+ I + ++ GD Sbjct: 137 SDFYSHDGMEAGLVLAGTL--------DLWIGDRTFRLEVGD 170 >gi|150390409|ref|YP_001320458.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950271|gb|ABR48799.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 179 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I R+ + LT LA++ L +K +R PS ++ IL A Sbjct: 2 DIGEKIRRLRILNELTQDELAQRCDLTKGFISKIERNIT-----SPSIATLMDILEALGI 56 Query: 68 TICQLLDLP-FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + T++ E S ++ + +P+ S Sbjct: 57 DVNKFFNEDVQDKIVYTKEDIYESQNEELQHEVSWLIPNAQRNAMEPILIEI-LPQGSSN 115 Query: 127 HNGIYAIQTQDTRHK 141 + + K Sbjct: 116 IEEPHKGEEFGYVLK 130 >gi|58338178|ref|YP_194763.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227902636|ref|ZP_04020441.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] gi|58255495|gb|AAV43732.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227869542|gb|EEJ76963.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] Length = 174 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 5/102 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ +N + LA K + S +K + + P + I + + + L Sbjct: 48 IAQLRNDNNWSQEELAEKLNVSRQSVSKWESGQAK-----PDLDKIIALSDIFDVSTDYL 102 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 L + + L + + Sbjct: 103 LKDDNEEKSNPSTNKHHFSLSWVQFGRLNSAIWAIAGAIYAI 144 >gi|24378729|ref|NP_720684.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24376595|gb|AAN57990.1|AE014871_15 putative transcriptional regulator [Streptococcus mutans UA159] Length = 117 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E + + LT +A K + S+ + + + P + ++ K Sbjct: 4 ERLKSLRLEAGLTQKQIAEKLEIKQQSYAQWESGRTK-----PRSATLNKFADFFG 54 >gi|21910593|ref|NP_664861.1| putative transcriptional regulator protein [Streptococcus pyogenes MGAS315] gi|28895718|ref|NP_802068.1| transcriptional regulatory protein [Streptococcus pyogenes SSI-1] gi|21904794|gb|AAM79664.1| putative transcriptional regulator protein [Streptococcus pyogenes MGAS315] gi|28810967|dbj|BAC63901.1| putative transcriptional regulatory protein [Streptococcus pyogenes SSI-1] Length = 71 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R + + +A+ AG+ + + +R PS KI E Sbjct: 5 LKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAMKIAKVFQEP 59 Query: 69 ICQLLDLPF 77 + ++ L Sbjct: 60 VEEVFHLVE 68 >gi|325264845|ref|ZP_08131573.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029834|gb|EGB91121.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 693 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 5/101 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + +LT + +A G+ +++ + R P + + KI ++ Sbjct: 8 ERLTALRTGSSLTQTQMAELLGISRSTYANYEVG-----KRTPDLKMLIKIADVFTCSLD 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +L+ + S G +P+ Sbjct: 63 ELVGRNTPMPYIGNNCPAAVRETVSGYLPSMGRESMPGYPS 103 >gi|312138238|ref|YP_004005574.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887577|emb|CBH46889.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 197 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 7/136 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + ++ T S LA G+ ++ ++ + R P+ E + + A Sbjct: 13 DAVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQ-----RKPNLELLLPLARAYG 67 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS--GSGGFFDSGVFPTGNKWNTVGVPEIR 124 + +L+ P + K P GG G + V + Sbjct: 68 VPLDELVGAPETGDPRIHLKPITRGGKTIVPLTRRPGGIQAYKHVIPGARGPQVPDLRVH 127 Query: 125 SPHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 128 EGYEWLYVLNGKLRLV 143 >gi|310640619|ref|YP_003945377.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245569|gb|ADO55136.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 157 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 4/91 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E L+ + LA AG+ + ++ + P ++ KI A + + Sbjct: 7 GTYLKQQREHKQLSINQLADAAGISNSQISRIENGLRG----VPKPSTLRKIADALSVSY 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 +++ ++ L Sbjct: 63 TEMMKAAGYWADDDSIEQNPHELYRSTVPEW 93 >gi|308274963|emb|CBX31562.1| hypothetical protein N47_E50740 [uncultured Desulfobacterium sp.] Length = 117 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 26/108 (24%) Query: 3 SFSHKKIWE-AIDRM----------------------AERHNLTPSGLARKAGLDPTSFN 39 +HK++ A+DR +T + +A + G + Sbjct: 1 MLTHKELKARALDRADVKDEYDQLDDEFSLLDQFLKARSAAGITQAEVAERIGTTQSVIA 60 Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKE 87 + + + PS ++ K A + + S R Sbjct: 61 RLESGSGK---HSPSLATLQKYANALGCRLEMKIVKVKSSNREKNHPA 105 >gi|296452101|ref|ZP_06893812.1| transcriptional regulator [Clostridium difficile NAP08] gi|296877457|ref|ZP_06901490.1| transcriptional regulator [Clostridium difficile NAP07] gi|296259051|gb|EFH05935.1| transcriptional regulator [Clostridium difficile NAP08] gi|296431469|gb|EFH17283.1| transcriptional regulator [Clostridium difficile NAP07] Length = 144 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 5/82 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + + H T LA K + S K + P S K+ N Sbjct: 5 INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESI-----PDIGSCIKLAKLYNVK 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90 + L++ + + Sbjct: 60 LDDLVNHSEEKTGIIVPPKGKF 81 >gi|218688918|ref|YP_002397130.1| putative transcriptional regulator from the CI family [Escherichia coli ED1a] gi|218426482|emb|CAR07310.1| putative transcriptional regulator from the CI family [Escherichia coli ED1a] Length = 102 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + LT + +A + G T+ + + G + PS ++ K AT Sbjct: 44 AARKEAGLTQAEVAERMGTKATAITRMESNLASGTS-GPSFATLKKFARATG 94 >gi|139438180|ref|ZP_01771733.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] gi|133776377|gb|EBA40197.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] Length = 137 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R + +T + LA GL + + + E + I AA + Sbjct: 3 VGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKP-----ELLESIAAALGVS 57 >gi|77165129|ref|YP_343654.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254433736|ref|ZP_05047244.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27] gi|76883443|gb|ABA58124.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] gi|207090069|gb|EDZ67340.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27] Length = 76 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + LT + LA++A ++ + +K +R E + ++ KI A + + Sbjct: 3 VGKNIKGLRIAAGLTQTQLAKEARINQSGLSKIEREENE----SITLPTLRKIAKALDCS 58 >gi|85709529|ref|ZP_01040594.1| hypothetical protein NAP1_11628 [Erythrobacter sp. NAP1] gi|85688239|gb|EAQ28243.1| hypothetical protein NAP1_11628 [Erythrobacter sp. NAP1] Length = 238 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + LT + +A G+ + ++ E I I T Sbjct: 143 LGKRLNTLRRERGLTLAQVADALGVSKPTVWAWEKDKARPLP-----ERIGAIADVLGVT 197 Query: 69 ICQLL 73 L+ Sbjct: 198 SEDLM 202 >gi|306825744|ref|ZP_07459083.1| helix-turn-helix domain protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432105|gb|EFM35082.1| helix-turn-helix domain protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 361 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 50/177 (28%), Gaps = 15/177 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ + E +N+T A + G+ + +K S E+ K+ + ++ Sbjct: 17 GQYVEELIEDYNVTQKEFAERLGVSAKTVSKIVNAEE-----SISKETAHKLAKLSGVSM 71 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L+L + + +E L D F P Sbjct: 72 QTWLNLQNAYDVKVAEIIEERELEEGSEKEICEMIDFKYFKEK----------GYVPDKR 121 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + K + + + L+ + ++ ++ +K + Sbjct: 122 YSLKEKIIELRKILGVASIENLTSFNHLVSYRNTREFTTKSIVNSNIMLELASKRVR 178 >gi|295425417|ref|ZP_06818113.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] gi|295064868|gb|EFG55780.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] Length = 143 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 6/128 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + LA K + S +K + + P + I + N + L Sbjct: 20 ITQLRNDKKWSQEDLAEKINVSRQSVSKWESGQTK-----PDLDKIIVLSEIFNVSTDYL 74 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFP-PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L + + Y S + G ++ + I P I Sbjct: 75 LKDDEKEINNASTNKHRFNFSYSHLNSAIWTIAVAIYIICGFAFDNWDLSLIIIPVAMIL 134 Query: 132 AIQTQDTR 139 ++ T+ Sbjct: 135 SVLTRLFI 142 >gi|238063802|ref|ZP_04608511.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885613|gb|EEP74441.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 214 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 42/136 (30%), Gaps = 9/136 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + T + L+ G+ ++ ++ + R P+ E + + A Sbjct: 32 DVGPRLRALRRQRETTLAELSAATGISVSTLSRLESGT-----RRPTLEQLLPLARAHGV 86 Query: 68 TICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 T+ L+ P + + +L G V P G+ + Sbjct: 87 TLDDLVGAPPTGDPRIHLRPVTRHGMIMLPLTRRAGGIQAYKLVIPAGSGRREPDR-QTH 145 Query: 125 SPHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 146 EGYEWLYVLNGRLRMV 161 >gi|229187999|ref|ZP_04315094.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] gi|228595479|gb|EEK53204.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] Length = 116 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 5/78 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + +T L G+ + + ++ + P ES+ KI T Sbjct: 2 IGEKIKELRKNSKITQEQLGNAIGVSKMAISYFEKG-----KKSPGRESLEKIADYFGVT 56 Query: 69 ICQLLDLPFSDGRTTEKK 86 LL E+ Sbjct: 57 TDYLLGRSEDPELNEEEN 74 >gi|227873856|ref|ZP_03992078.1| helix-turn-helix motif protein [Oribacterium sinus F0268] gi|227840282|gb|EEJ50690.1| helix-turn-helix motif protein [Oribacterium sinus F0268] Length = 331 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 5/78 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +++ + LA K + S +K + G P I K+ + + Sbjct: 3 LADKIIELRKKNGWSQEDLAEKLDVSRQSISKWE-----GAQSIPDMNKILKLSEVFSVS 57 Query: 69 ICQLLDLPFSDGRTTEKK 86 LL E Sbjct: 58 TDYLLKDEIELDSPGEAP 75 >gi|164688807|ref|ZP_02212835.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] gi|164602283|gb|EDQ95748.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] Length = 364 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 5/113 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + +T LA G+ +S +K + +P + ++ N Sbjct: 5 NIGKNITKFRRSKGITQDELASYIGVSKSSVSKWENSIT-----YPDIMLLPQLATLFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +L+ + +K F + S ++ Sbjct: 60 SLDELMGYEPQLIKEDIQKIYFELAQEFAQNDSNEVLKKCEEYIKKYYSCFEF 112 >gi|154498955|ref|ZP_02037333.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC 29799] gi|150271795|gb|EDM99021.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC 29799] Length = 115 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + I I + E LT + LA G+ ++ +R + + Sbjct: 7 EEIIGTNIAKYREAAGLTQAALAEIIGISTAFVSRVERGQKKMK 50 >gi|71279897|ref|YP_269962.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71145637|gb|AAZ26110.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 179 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R+ +H LT + LA A + + + PS + K+ A + Sbjct: 5 ISEGIKRLRAQHKLTQTKLADMADIPRATLANMESEQSN-----PSITLVVKVAQALGVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + L+ + +K+ I L Sbjct: 60 VDDLISRQSAHVTEVCRKDMPITQLDD 86 >gi|322805162|emb|CBZ02726.1| transcriptional regulator [Clostridium botulinum H04402 065] Length = 373 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 19/215 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I + I + +T LA G+ S +K + +P + + Sbjct: 1 MREL---NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSS-----YPDILFLPE 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + N ++ +LL + KK F + ++ Sbjct: 53 LATYFNISVDELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKYYSCFPF 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Y+ ++ ++ + IL+ + + + T + Sbjct: 113 LLSIIQLLLNYSN-------LIKNDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 165 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 +A++ + I L+ N P D+ I Sbjct: 166 LAEMTLGNSEEVIRLL-DNKLDP---YRGDDVILI 196 >gi|318081943|ref|ZP_07989252.1| hypothetical protein SSA3_35774 [Streptomyces sp. SA3_actF] Length = 167 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + E L+ S LAR++GL + + + R P+ E+++ + A Sbjct: 2 GARIRELREARALSLSALARRSGLGKATLSGLEAGT-----RNPTLETLYAVTTALG 53 >gi|257440012|ref|ZP_05615767.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197364|gb|EEU95648.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 65 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++T LA AG+ + N ++ SI KIL T + + Sbjct: 7 LKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCR--SICKILGKTLDELFW 63 >gi|254927431|gb|ACT85948.1| MucA [Klebsiella pneumoniae] Length = 99 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 2/58 (3%) Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 H+ + SM GD+L+++ A + G ++ + K Sbjct: 43 HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVK 99 >gi|187777701|ref|ZP_02994174.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] gi|187774629|gb|EDU38431.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] Length = 130 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 5/90 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ L+ L K + + +K + P E + + ++ +L Sbjct: 7 LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + T + L S Sbjct: 62 VMDVKAKESTKTEPLVMNRLETIIDSIDRE 91 >gi|170700683|ref|ZP_02891679.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170134409|gb|EDT02741.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 130 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 42/121 (34%), Gaps = 10/121 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+ + ER L+ L+ + +D N+ + P+ +++ K++ A Sbjct: 6 LGAALRALRERRTLSQRELSELSDVDNAYINRLESGEKT----NPTPDTLAKLIRALKAP 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--NTVGVPEIRSP 126 + + + + + L+ + + D + G ++ + PE Sbjct: 62 ERDAAMVKWL----ADHADASVELVKYVLDHAEIPVDYFISAAGMRFRGDARPTPEKLIE 117 Query: 127 H 127 Sbjct: 118 R 118 >gi|169794442|ref|YP_001712235.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] gi|169147369|emb|CAM85230.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] Length = 210 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 17/144 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + H + I + + H+L+ LA +AG+ + + + S + I Sbjct: 33 SVLQH--VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 85 Query: 62 LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 A ++ P +K+E + L PS S + G Sbjct: 86 AAVLGVDFRTIVSAPELKEHALVNALAWQGQKEESKATFLASVPSRSQVELWTWSLAVG- 144 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137 + V + IY ++ + Sbjct: 145 -ESYVAEADAEGWQELIYVLEGEL 167 >gi|167758401|ref|ZP_02430528.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] gi|167664298|gb|EDS08428.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] Length = 179 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 35/137 (25%), Gaps = 16/137 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + NLT LA +A L ++ +R PS ++ IL Sbjct: 2 EIGPKLRELRIAKNLTQEELADRAELSKGFISQLERDLT-----SPSIATLVDILQCLGT 56 Query: 68 TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 TI + + + P + + Sbjct: 57 TINEFFSEDPEEQVVFHYEDYFEKEDTELLNKTEWIIPNAQKNMMEPIRLTLKPGGSTYR 116 Query: 119 GVPEIRSPHNGIYAIQT 135 VP Y ++ Sbjct: 117 DVP--HEGEEFGYVLKG 131 >gi|160944249|ref|ZP_02091478.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium prausnitzii M21/2] gi|313113217|ref|ZP_07798837.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] gi|158444431|gb|EDP21435.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium prausnitzii M21/2] gi|295103725|emb|CBL01269.1| transcriptional regulator, XRE family [Faecalibacterium prausnitzii SL3/3] gi|310624459|gb|EFQ07794.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] Length = 93 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +A+ + LT L+ + G+ +K +R PS ++ ++ A Sbjct: 30 IAQAMIDARKESGLTQKQLSERTGIAQADISKLERGNAN-----PSLRTLQRLAAGMGMN 84 >gi|1871451|dbj|BAA11167.1| C5-cytosine methylase [Salmonella enterica subsp. enterica serovar Typhi] gi|3421011|emb|CAA76526.1| M.Ecl18kI (DNA-methyltransferase) [Enterobacter cloacae] Length = 379 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 5/137 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDP---TSFNKSKRFGIEGRNRWPSTESIFKILA 63 I I ER ++T A GL + + +R + +++ Sbjct: 3 DNIAATIKEKRERLHMTQKEFADALGLSKYGDRTIRRWERGET--KPTGAELKAVMDFPD 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + D + + N P+ Sbjct: 61 TPPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHANYGDFPDG 120 Query: 124 RSPHNGIYAIQTQDTRH 140 I + Sbjct: 121 DITKIDEKDIPDHEILV 137 >gi|330897428|gb|EGH28847.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 99 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E + L+ LAR++G+ + + ++ + PS S+ K+L T+ Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58 Query: 70 CQLLDLPFSDGRTTE 84 G+ Sbjct: 59 ADFFTFDQPPGQDQY 73 >gi|320353458|ref|YP_004194797.1| helix-turn-helix domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121960|gb|ADW17506.1| helix-turn-helix domain protein [Desulfobulbus propionicus DSM 2032] Length = 149 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 7/115 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + LT L+ G+ S + + + PS E++ + T Sbjct: 10 KKIGNRLKEFRVENGLTLVQLSELIGISHGSLSGLENNKSK-----PSAETLSNLCLYTE 64 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 I LL + ++ + F + + P W V Sbjct: 65 IDIVWLLTGRREKPIERKIPTRKFEI--FEQAEEWLREEVQKNPKKEIWFEVEFE 117 >gi|225571208|ref|ZP_03780206.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] gi|225160039|gb|EEG72658.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] Length = 114 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + L+ LA G+ ++ N +R R P+ E++ I Sbjct: 14 LRLLRNGRGLSQQELALSLGISKSAVNMYERGE-----RQPNFETLELIADFF 61 >gi|146319855|ref|YP_001199566.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145690661|gb|ABP91166.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|292557469|gb|ADE30470.1| Helix-turn-helix motif-containing protein [Streptococcus suis GZ1] Length = 121 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K++ + I + NL+ LA K + + +K + P + + + Sbjct: 1 MIM---KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEAT-----PDIDKLVQ 52 Query: 61 ILAATNET 68 + + Sbjct: 53 LAEIFGVS 60 >gi|110802551|ref|YP_699244.1| DNA-binding protein [Clostridium perfringens SM101] gi|110683052|gb|ABG86422.1| DNA-binding protein [Clostridium perfringens SM101] Length = 179 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 13/119 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I R+ LT LA + L ++ + PS ++ IL Sbjct: 2 EIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLIDILDILGT 56 Query: 68 TICQLLDLPFS--------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + + D TE +E + L++ P+ + + + Sbjct: 57 NLTEFFSEDTNEKIAFSKDDMFETENEELKYNLMWLVPNAQKNDMEPIMITIKPGGQYI 115 >gi|78355603|ref|YP_387052.1| MerR family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218008|gb|ABB37357.1| transcriptional regulator, MerR family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 189 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 11/144 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KK+ I + E +T LA AGL + + +PS + KI A N Sbjct: 4 KKLGARICKFREERGMTREELAEAAGLGADFITALEEEDL-----YPSIGPLQKIARALN 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT------VGV 120 + +D + +K L + + K + + + Sbjct: 59 VRLGTFMDDEVTRDPIVVRKSGRESDLTMQKARNKRAAFMFHSLGKGKSDRNMEPFFIEI 118 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 + + + Q ++ Sbjct: 119 APEPNEDRQLSSHQGEEFIVVVSG 142 >gi|332360161|gb|EGJ37975.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 169 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 5/106 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + LA + + S +K + P E I ++ Sbjct: 3 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 T LL ++ Y+ S F+ Sbjct: 58 TTDYLLLEESDKPEINPVLSEDEKDRYYKEVKSYSFWQVLYIFISA 103 >gi|325266707|ref|ZP_08133383.1| DNA-binding protein [Kingella denitrificans ATCC 33394] gi|324981816|gb|EGC17452.1| DNA-binding protein [Kingella denitrificans ATCC 33394] Length = 146 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 5/106 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E I R+ E + + +A+K + + K +R S + ++ A Sbjct: 5 KINEKIKRLREGKHWSQEEMAQKLNMSKNGYAKIERGETSA-----SLGRLEQVAAVLGI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +C+LL + + +L + + Sbjct: 60 GLCELLADVCGGRNADDARGSAENVLLLQQARQIIELKDEIIANKE 105 >gi|309389332|gb|ADO77212.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM 2228] gi|309389630|gb|ADO77510.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM 2228] Length = 92 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + I R +NLT LA + G ++ ++ + PS E + K+ A Sbjct: 31 EIKKQIIRYRIENNLTQKELADRIGTKQSAISRLENDDYN-----PSVEFLDKVAHAFG 84 >gi|293374180|ref|ZP_06620511.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292647209|gb|EFF65188.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 191 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 14/175 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ + L+ LA K + + +K + P TE + ++ N + Sbjct: 3 LGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAI-----PDTEHVVRLAEVFNVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I LL T ++K + + F G F + V +I + Sbjct: 58 IDSLLRGDLKCQPTNQEKCLPVLIGMMVIGLVVSFMMWGTFKSFMLVTIGWVIQIVTIIL 117 Query: 129 GIYAIQ----TQDTRHKTQDTSMLPLYR-----KGDILILNSAIQVNCGDRLLIK 174 I + + K ++P + ++ A ++ Sbjct: 118 FIVIHEKPTYKEIYWIKVSSVWLIPPFIVKYLVDQLMIFYPKARPAIFDLIVVSM 172 >gi|288905863|ref|YP_003431085.1| transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] gi|288732589|emb|CBI14161.1| putative transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] Length = 416 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 5/95 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R ++ L S A+ G+ + ++ + + S E+ KI +A C Sbjct: 5 YLQRFRKKTGLNQSDFAKTVGISQSLISRYELG-----KKTLSVETFHKIKSAFGYFDCD 59 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 L + + L F F Sbjct: 60 KDRLRYMIDYLRITFKSVRDLEKFTREYLLIPFRE 94 >gi|326316490|ref|YP_004234162.1| helix-turn-helix domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373326|gb|ADX45595.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 187 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + A+ R ER L+ S LA++A + ++ ++ + PS E+++ + A Sbjct: 13 LASAVRRERERLGLSVSELAKRARIAKSTLSQLEAGSGN-----PSLETLWALATALG 65 >gi|29171513|ref|NP_808697.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856006|gb|AAO59063.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] Length = 111 Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 5/99 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + L+ + LA G D ++ +R P E + +I N Sbjct: 2 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGST-----LPGIEQLIRIATVFNVA 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 +LL RT ++ S + + Sbjct: 57 PGELLPGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEM 95 >gi|316941295|gb|ADU75329.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 374 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I I +M LT +A G+ S +K + +P + ++ Sbjct: 1 MKEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQS-----YPDITFLPQLAT 55 Query: 64 ATNETICQLLDLPFSDGRTTEKK 86 N +I +L+ + +K Sbjct: 56 LFNISIDELMGYEPQMSKEDIRK 78 >gi|227892050|ref|ZP_04009855.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] gi|227866160|gb|EEJ73581.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] Length = 184 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 16/40 (40%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + E ++ + LAR++G+ S + + + Sbjct: 121 NRLKIAIENKGISQAELARRSGISRASITGYLKGKYKAKP 160 >gi|284029517|ref|YP_003379448.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808810|gb|ADB30649.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 184 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 10/154 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ R R L+ S +A++AG+ ++ ++ + PS E+++ + A Sbjct: 10 IAGSLRRERARAGLSLSEVAKRAGVAKSTLSQLESGTGN-----PSVETLWALCVALEIQ 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L+D P + E + + + P + Sbjct: 65 FADLIDPPRPRVQVIRADEGPAIYSEQADYSATLVASCPPNARRDIYRIAVAPGQGRESS 124 Query: 129 GIYAIQTQDTRH----KTQDTSMLP-LYRKGDIL 157 + S P GD + Sbjct: 125 PHMPGTIEHVVLGTGRALVGLSTEPVELNPGDYI 158 >gi|255657067|ref|ZP_05402476.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] Length = 141 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 5/82 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + + H T LA K + S K + P S K+ N Sbjct: 2 INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESI-----PDIGSCIKLAKLYNVK 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90 + L++ + + Sbjct: 57 LDDLVNHSEEKTGIIVPPKGKF 78 >gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] Length = 187 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 ++ I R+ + ++T LA++ G++ +K + IE PS + KI +A + Sbjct: 3 FDQIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIE-----PSVSQLQKIASALGVPM 57 Query: 70 CQ 71 + Sbjct: 58 ME 59 >gi|126180158|ref|YP_001048123.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862952|gb|ABN58141.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 68 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + +T LA++ G+ + ++ PS + +K+ TI + Sbjct: 4 RIRELRAKAGITQEELAQQVGVRRETIVFLEKGKYN-----PSLKLAYKVAHTLGSTIEE 58 Query: 72 LLDLPF 77 + Sbjct: 59 VFTFEE 64 >gi|66394914|ref|YP_239762.1| ORF050 [Staphylococcus phage 85] gi|66395932|ref|YP_240267.1| ORF047 [Staphylococcus phage 96] gi|189427127|ref|YP_001949803.1| putative repressor protein [Staphylococcus phage phiMR25] gi|62635843|gb|AAX90954.1| ORF050 [Staphylococcus phage 85] gi|62636353|gb|AAX91464.1| ORF047 [Staphylococcus phage 96] gi|189339038|dbj|BAG48102.1| putative repressor protein [Staphylococcus phage phiMR25] Length = 108 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/101 (9%), Positives = 32/101 (31%), Gaps = 2/101 (1%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + E ++++ + +N+T L+ G+ ++ + + R + + Sbjct: 7 RKILSENLEQLMKENNITQVELSEAIGVSQSTISNWLKELK--YPRISKVQQLADYFNVP 64 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 I + + K++ P + + Sbjct: 65 KSRITEERSIHQETIAGHANKDEFTPEEWEEIENFMQWVRD 105 >gi|125974048|ref|YP_001037958.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714273|gb|ABN52765.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 374 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I I +M LT +A G+ S +K + +P + ++ Sbjct: 1 MKEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQS-----YPDITFLPQLAT 55 Query: 64 ATNETICQLLDLPFSDGRTTEKK 86 N +I +L+ + +K Sbjct: 56 LFNISIDELMGYEPQMSKEDIRK 78 >gi|313906268|ref|ZP_07839612.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313468888|gb|EFR64246.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 96 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ID + N+T LA + G+ T +K + R PS + + ++ + Sbjct: 30 IRAIIDARISQ-NMTQKELAERTGIAQTEISKLENGT-----RNPSIKLLQRLAEGMDM 82 >gi|295401956|ref|ZP_06811918.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975958|gb|EFG51574.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 72 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +K I + T LA++ G+ ++ + +R R P+ E + +I N Sbjct: 4 EKWGRRIRAFRKLKGYTQERLAKELGISVSTLGEIERGN-----RLPTEELVQQIAERLN 58 Query: 67 ETICQLLDLPF 77 ++ +L Sbjct: 59 ISVEELAPHSE 69 >gi|302520734|ref|ZP_07273076.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302429629|gb|EFL01445.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 241 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + LAR+A L ++ ++ + R S ++ + L + + Sbjct: 12 VRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQR--RLALDSLVTLARALDTSLDQ 69 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + ++ G P + Sbjct: 70 LVETTSDDVVTNPMIDGARGQMRWPVKADPGLTVVRQRMTEPPPD 114 >gi|269122513|ref|YP_003310690.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268616391|gb|ACZ10759.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 127 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 3/74 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + E T LA K G ++ NK + + + KIL T Sbjct: 3 IGKRIKKRREELGYTQEQLAEKMGYKSKSTINKIEAGIND--ITQSKITAFAKILKTTPS 60 Query: 68 TICQLLDLPFSDGR 81 + D + Sbjct: 61 YLMGWEDEESEIYK 74 >gi|269956967|ref|YP_003326756.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305648|gb|ACZ31198.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 101 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%) Query: 1 MTSFSHKKIWE-----AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M F + +W + R+ R T +AR+AG+ P ++ +R E PS+ Sbjct: 1 MAGFRREPLWRHVLGDYLRRLRHRRGETLDDVARRAGVSPQYLSEVERGMKE-----PSS 55 Query: 56 ESIFKILAAT 65 E I I A Sbjct: 56 EMIAAIAGAL 65 >gi|254489092|ref|ZP_05102296.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214042100|gb|EEB82739.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 204 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 48/172 (27%), Gaps = 12/172 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E +M + ++ L+ K+G+ + ++ +R R +I + L + Sbjct: 16 IGETFRQMRQNQGISLRELSEKSGVSVGTISQIERDLANPSMRV--LTAIRRALNVPMQV 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125 + +D P G + GN + + + Sbjct: 74 MFGDDSGTTADSDADGDPPFLRRAAKRPRIDLGSLHKELLTSGGNHNLQIMILTIEPGGT 133 Query: 126 PHNGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQ-VNCGDR 170 N + + + + +GD + +SA D Sbjct: 134 SGNTTLSYPAEKGGLVLEGELMLSVDNREAHLEEGDSFVFDSAQPHAFRNDG 185 >gi|254384422|ref|ZP_04999764.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1] gi|194343309|gb|EDX24275.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1] Length = 462 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I R+ L+ LA L P+ + + R PS E + +I A Sbjct: 5 QTLGSRIRRLRREAGLSQMDLA-GENLSPSYISLLEAG-----KRTPSPEVLEQIAARLG 58 Query: 67 ETICQ 71 Q Sbjct: 59 CAPGQ 63 >gi|189353554|ref|YP_001949181.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189337576|dbj|BAG46645.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 185 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 14/151 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + +T S LA + G ++ +R P+ + I A Sbjct: 14 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 68 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--------GVPEIR 124 L + E +Y+ + + + + P Sbjct: 69 YSLSKPRSIPWVTRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGASSGERPVDD 128 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 S G + ++ + D Sbjct: 129 SDEQGGFVLEGEL-TIWVDGDDTPVTLGPND 158 >gi|187780191|ref|ZP_02996664.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] gi|187773816|gb|EDU37618.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] Length = 183 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 6/137 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + NL+ LA +G+ ++ ++ P+ +++KI Sbjct: 7 IAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTN-----PTINTLWKIAKGLKVP 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 LL+ D +K++ E ++ S + + + + E S + Sbjct: 62 YTSLLEQKEHDTYVIKKRDIEAQFTEEGHYRVYCYYTSTPYRNFELF-QIEIDEGCSYKS 120 Query: 129 GIYAIQTQDTRHKTQDT 145 ++ + Q+ + Sbjct: 121 IGHSKKCQEYIMVLEGE 137 >gi|154504949|ref|ZP_02041687.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] gi|153794832|gb|EDN77252.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] Length = 248 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 11/140 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++K + + + T LA K L + +K +R P + + Sbjct: 9 NQKFGGFVAALRKEKGYTQKELAEKLFLSNKAISKWERGLS-----LPDIALLEPLADIL 63 Query: 66 NETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 T+ +LL ++ E L F + ++ + Sbjct: 64 GVTVAELLKGERIHAALEPQEMDELLGKTIHLSDNQKHVHSGFHKMWYLFVLGFSILEF- 122 Query: 122 EIRSPHNGIYAIQTQDTRHK 141 + IQ + Sbjct: 123 -GILIWQDVNLIQKDIFVLE 141 >gi|108758898|ref|YP_631911.1| peptidase S24-like domain-containing protein [Myxococcus xanthus DK 1622] gi|108462778|gb|ABF87963.1| peptidase S24-like domain protein [Myxococcus xanthus DK 1622] Length = 126 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 21/77 (27%) Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM P R GD + +L+ +V L ++ Sbjct: 2 PPALSWVPVHGDSMWPSLRSGDHAGVEPLEGAPRPGDVLLARFDHALVLHRLRRWEAGAV 61 Query: 194 DLMSLNCCYPVDTVEMS 210 L N ++ S Sbjct: 62 ALRGDNSPQDDAPLDPS 78 >gi|148253753|ref|YP_001238338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405926|gb|ABQ34432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 482 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 7/105 (6%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M S KK + R+ ++ L+ + LA G+ P+ N +R R S + + Sbjct: 1 MPGESGKKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQ-----RPVSAQIL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 ++ + + L + PL Sbjct: 56 LRLAETYDLDLRDLATADEDRFFAELNEIFSDPLFRQIELPKQEL 100 >gi|328948101|ref|YP_004365438.1| hypothetical protein Tresu_1233 [Treponema succinifaciens DSM 2489] gi|328448425|gb|AEB14141.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 114 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + I + +T LA KAG+ +K + WP E+I K L Sbjct: 9 KILGANIRCYRIKLKMTQEELAEKAGITSVGISKIETGKT-----WPKKETIEKFLEILE 63 Query: 67 ETICQ 71 Q Sbjct: 64 VKPFQ 68 >gi|268591032|ref|ZP_06125253.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313838|gb|EFE54291.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 88 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 K I + I + + L+ S LAR G+ ++ + + S+ Sbjct: 24 KNIGKKIKLLRSEYRLSGSDLARIIGISQQQLSRYENGLSDISTSKIMLISV 75 >gi|268590899|ref|ZP_06125120.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313692|gb|EFE54145.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 102 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + I ++ + LT + +A + F++ +R +S+ I Sbjct: 9 KIVGSRIKKLRREYGLTGTEVAMALNVSQQQFSRYERGINR-----IDIDSLVMIADFLK 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLY 94 ++ L+ + + E L + Sbjct: 64 VSVHYFLEDIDLEQSNSWTSEYNSLLSH 91 >gi|254418818|ref|ZP_05032542.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] gi|196184995|gb|EDX79971.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] Length = 69 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + + T GLA KAG+ + N + + + L T Sbjct: 5 RLGSRLKELRTAAGFTQQGLADKAGVSRKTINTVENGVFI--PSTIVALDLARALNTT 60 >gi|160938794|ref|ZP_02086145.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] gi|158437757|gb|EDP15517.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] Length = 230 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 6/62 (9%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I ++ + ++ LA+K + + + + + P + + + +A Sbjct: 10 NTVGKNIVKLRKEQGMSQEQLAQKIHVTRQAVSNWETGRSQ-----PDLDMLETLASAFG 64 Query: 67 ET 68 Sbjct: 65 TD 66 >gi|157693789|ref|YP_001488251.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682547|gb|ABV63691.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 134 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 2/124 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + E ++ + LA +G+ ++ + G + + + + L E + Sbjct: 5 GEQLRILRENRKMSVNQLAMYSGVSAAGISRIENGKR-GVPKPLTIKKLAHALKVPYEDL 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + K + E L + + +F G+ W + +I + Sbjct: 64 MLLAGHIEQEQVHEMKPKYESVLKIYQTALQKDVEHLPMFD-GDLWERLSAQDISQLNEY 122 Query: 130 IYAI 133 + Sbjct: 123 FLTL 126 >gi|111024214|ref|YP_707186.1| DNA-binding protein [Rhodococcus jostii RHA1] gi|110823744|gb|ABG99028.1| possible DNA-binding protein [Rhodococcus jostii RHA1] Length = 184 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ R ER ++ + +AR+AG+ ++ ++ + G PS E+++ + A + Sbjct: 10 IGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGN-----PSVETLWALCVALDVQ 64 Query: 69 ICQ 71 + Q Sbjct: 65 MSQ 67 >gi|302038624|ref|YP_003798946.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] gi|300606688|emb|CBK43021.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] Length = 202 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/172 (9%), Positives = 48/172 (27%), Gaps = 8/172 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H + + + R+ + +L+ LA K G P+ ++ + PS S +I +A Sbjct: 22 TH--VGDIVRRLRKSRHLSVRTLADKCGFSPSFISQVELRQA-----SPSIASTERIASA 74 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 T+ + + + + + + + + Sbjct: 75 LGVTLGEFFRTTSPSHAAVIRADARPVVESEWSRARIEAIGPISEDSQLEPMVITLESGG 134 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + Y + + Q ++ + + D Sbjct: 135 ASGSRPYVRRAEQLAVVLQG-TVELTLEENTYSLKRGDAACIPSDIHHCWRN 185 >gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1] Length = 322 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ ++ LA K G+ S +K + G P I +I + + Sbjct: 7 LIELRKKSGMSQEELAEKLGVSRQSVSKWE-----GAQSTPDLNRILEISKIFDVS 57 >gi|302534578|ref|ZP_07286920.1| conserved hypothetical protein [Streptomyces sp. C] gi|302443473|gb|EFL15289.1| conserved hypothetical protein [Streptomyces sp. C] Length = 404 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 14/38 (36%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + + + A G+D T+ + +R E + Sbjct: 3 LKERRKARGYSQESFAVAVGVDRTTVGRWERGETEPQP 40 >gi|227498411|ref|ZP_03928557.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903869|gb|EEH89787.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 123 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 5/114 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + E+ + LA+KA ++P N+ + R + I + + Sbjct: 2 NIGDRIAELREQAGMKQYELAQKANMNPAVLNRIETG-----KRPARDDEIKALAHIFHV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + LL S T + + L+ P F + + Sbjct: 57 STDYLLGTSDSGYYTDPETARLAQELHDNPEYKAMFDATRGLSPEAVKEVMNFI 110 >gi|254415140|ref|ZP_05028902.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC 7420] gi|196177946|gb|EDX72948.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC 7420] Length = 72 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + ++ LA K GL T +R R + +++ K+ + + Sbjct: 7 VASNLRKLRQEIGISQEELAGKCGLHRTYVGAIER-----SERNITLQTLEKLAVSLGVS 61 Query: 69 ICQ 71 Sbjct: 62 PLD 64 >gi|146299833|ref|YP_001194424.1| putative phage repressor [Flavobacterium johnsoniae UW101] gi|146154251|gb|ABQ05105.1| putative phage repressor [Flavobacterium johnsoniae UW101] Length = 221 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 23/213 (10%) Query: 20 HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL-DLPFS 78 +T G + S G T+ KIL E + L Sbjct: 8 KGITKYKFCNDLGFSNKFLDNSSNMG---------TDKACKILHYYPEINSEWLLTGNGP 58 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-----PEIRSPHNGIYAI 133 + + + ++ + P+ I + Sbjct: 59 MIKEDNTNIVIMNNDRRTIDTLHVSQEIPLYDLEAVAGLRELFNSGKPQRVLDTIKIPNL 118 Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRL---LIKPRTGD-IVAKVLIS 187 D SM PL + GDI++ + G+ + + I K + Sbjct: 119 PKCDGAISVTGDSMYPLLKSGDIVLYKETEFENIFFGEMYLLSVKLNDWEEYITVKYVQK 178 Query: 188 --RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 + L+S N + + +S I +A I Sbjct: 179 SDLGSEFVKLVSQNSHHQPKDIHISKISALALI 211 >gi|41410057|ref|NP_962893.1| hypothetical protein MAP3959c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398890|gb|AAS06509.1| hypothetical protein MAP_3959c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 506 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 26/102 (25%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 38 VGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 92 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L + P Sbjct: 93 ATFFSSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHP 134 >gi|331091208|ref|ZP_08340049.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404655|gb|EGG84194.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] Length = 219 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + R ++ LA K + + +K ++ P E + ++ + + Sbjct: 2 IGENIKKYRRRKGMSQEELAVKLHVVRQTVSKWEQALSV-----PDAEVLMRMASLLEVS 56 >gi|330839181|ref|YP_004413761.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|329746945|gb|AEC00302.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 207 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/146 (10%), Positives = 44/146 (30%), Gaps = 8/146 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI----LAAT 65 E + + E+H+LT + +A++ G+ + + + + + + + K+ L Sbjct: 4 GEKLKALREKHHLTQTDVAKELGVTQRAISYYENNNVAPNDPE-ALNKLAKLFEITLDEL 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 Q L + E+ D F + +T + + Sbjct: 63 LNNDGQKSKLHKLIEKLLLDTERNYLEWRTAADAGFFDPDEAWF---DPIDTFNLEDFSR 119 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLY 151 ++ + + ++ Sbjct: 120 YDGYSFSARESYLAYYRGGGYLIAKL 145 >gi|327459409|gb|EGF05755.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] Length = 205 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL S + E++ + + Sbjct: 57 TTDYLLKGIESVVQKEEEQSIKYRRI 82 >gi|327401059|ref|YP_004341898.1| XRE family transcriptional regulator [Archaeoglobus veneficus SNP6] gi|327316567|gb|AEA47183.1| transcriptional regulator, XRE family [Archaeoglobus veneficus SNP6] Length = 183 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 16/178 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R ++ +T LA G+ + + ++ P + KI E + Sbjct: 8 IKRKRKKLGITQKKLAELVGVSQPLIARIESGNLD-----PKLSLVRKIFEVLEELEGKS 62 Query: 73 LDLPFSDGRT-----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + +E + S G+ V I Sbjct: 63 VNARSIMNSPVKFVTSSTTLREAIEIMMEDGISQMPVMDNGRVVGSITEGAVVRLILEKG 122 Query: 128 NGIYAIQTQDTRHK----TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 AI+ ++ L K +L+ + A+ V GDR++ D++ Sbjct: 123 VEASAIKVKECMEPPFPIISPDERLETISK--MLLGSPALLVAEGDRIVGIITKHDVM 178 >gi|324990276|gb|EGC22214.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 205 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL S + E++ + + Sbjct: 57 TTDYLLKGIESVVQKEEEQSIKYRRI 82 >gi|260887041|ref|ZP_05898304.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|260863103|gb|EEX77603.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] Length = 214 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/146 (10%), Positives = 44/146 (30%), Gaps = 8/146 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI----LAAT 65 E + + E+H+LT + +A++ G+ + + + + + + + K+ L Sbjct: 11 GEKLKALREKHHLTQTDVAKELGVTQRAISYYENNNVAPNDPE-ALNKLAKLFEITLDEL 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 Q L + E+ D F + +T + + Sbjct: 70 LNNDGQKSKLHKLIEKLLLDTERNYLEWRTAADAGFFDPDEAWF---DPIDTFNLEDFSR 126 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLY 151 ++ + + ++ Sbjct: 127 YDGYSFSARESYLAYYRGGGYLIAKL 152 >gi|271962334|ref|YP_003336530.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505509|gb|ACZ83787.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 199 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + R L+ LA G+ ++ +R P+ E + ++ + T Sbjct: 25 IAANLRRARLGRGLSVRELAELTGVSKALISQVERGVAN-----PTVEVLSRLATSLELT 79 Query: 69 ICQLLDLP 76 +L + Sbjct: 80 FGELTRIH 87 >gi|182625431|ref|ZP_02953203.1| LexA repressor [Clostridium perfringens D str. JGS1721] gi|177909271|gb|EDT71729.1| LexA repressor [Clostridium perfringens D str. JGS1721] Length = 358 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +++ L+ + LA K G+ T+ +R +E P+ ++ ++ N + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVE-----PNIYTLIQLSKLMNCS 63 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 1/49 (2%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182 + + SM L++ +++I GD ++ + Sbjct: 248 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC 296 >gi|197119160|ref|YP_002139587.1| XRE family helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197088520|gb|ACH39791.1| helix-turn-helix transcriptional regulator, XRE family [Geobacter bemidjiensis Bem] Length = 99 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 26/88 (29%) Query: 3 SFSHKKI--------------------WEAIDRMAERH---NLTPSGLARKAGLDPTSFN 39 +HK++ + +D+ + +T + +A + G ++ Sbjct: 1 MLTHKELKARALEREDVKDEYDRLNEEFHFLDQFLKARAAAGVTQAEIAERIGTTQSAVA 60 Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + PS ++ K A Sbjct: 61 RLESGRGK---HSPSIATLEKYAHALGC 85 >gi|58039039|ref|YP_191003.1| aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] gi|58001453|gb|AAW60347.1| Aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] Length = 180 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + NL+ LA++ G+ ++ + + + PS ++ +IL Sbjct: 2 DLGARLRFVRTARNLSQRELAKRTGVTNSTISLIESGDMN-----PSVGTLKRILDGIPV 56 Query: 68 TICQLL 73 T+ + Sbjct: 57 TLGEFF 62 >gi|78049702|ref|YP_365877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927530|ref|ZP_08188768.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|78038132|emb|CAJ25877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542123|gb|EGD13627.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 66 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E + + L + G+ + N + + PS F+I E+I Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 HVFLYED 64 >gi|117927278|ref|YP_871829.1| XRE family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647741|gb|ABK51843.1| transcriptional regulator, XRE family [Acidothermus cellulolyticus 11B] Length = 233 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I + I ++ LAR AG+ ++ +R R PS E + +I Sbjct: 7 MATPFNIGDFIREQRRLAQMSLRQLARIAGVSNPYLSQVERG-----LRRPSAEILQQIA 61 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + L T +L P Sbjct: 62 RGLRISAEALYVRAGILDERTADGAVVDAVLADPH 96 >gi|330974040|gb|EGH74106.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 114 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 5/98 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + ++ + LA G D ++ +R P E + +I N Sbjct: 8 IGAKIKTLRKSTTMSQADLAELIGCDAPLVSRYERGTT-----LPGIEQLIRIATVFNVA 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 +LL RT ++ S + Sbjct: 63 PGELLPGGQDQLRTRLISLRQDITERIAEVDSPEHLEE 100 >gi|297585255|ref|YP_003701035.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143712|gb|ADI00470.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 289 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H AI + E+ LT LA+ D ++ +K + P ++ K+ Sbjct: 2 HSSYGHAIKSLREQQGLTQEALAKDI-CDRSTLSKIENGSST-----PHASTLAKLCTRL 55 Query: 66 NET 68 N + Sbjct: 56 NIS 58 >gi|323343170|ref|ZP_08083401.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463234|gb|EFY08429.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 127 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 7/107 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ + LT LA++ + K + P ++ KI N ++ Sbjct: 4 ANLKKIRLKRKLTQRELAKRVNYSQQAVAKWEVGISN-----PDISNLVKICEELNISVE 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 LL + E + L ++ G + Sbjct: 59 CLLCQKPKHMQEF--DEWSLHLAFYHVLNLCGTHHEIGLDIRDLDEE 103 >gi|158339379|ref|YP_001520556.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] gi|158309620|gb|ABW31237.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] Length = 216 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 8/140 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + H+ + + LAR G+ + N + + PS E FK+ +I Sbjct: 3 NRLKELRKLHHKSQAALARDLGVSRQAVNGFESGKFD-----PSLEMAFKLAKLFKVSIE 57 Query: 71 QLLDL--PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + ++ +K F P F SG V PE Sbjct: 58 DVFIYEAENPMQTLVKRYKKYFGFERFAPKAINVFKFSGHRAEQEGTAQV-TPEHLLAGL 116 Query: 129 GIYAIQTQDTRHKTQDTSML 148 T + T++ Sbjct: 117 LADPTSTSARLLHSNGTAVE 136 >gi|148262670|ref|YP_001229376.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396170|gb|ABQ24803.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 113 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + ++I + ++ ++ T LA + G+ K + + +T+ + ++ Sbjct: 3 PILNSREIGHRLRQLRQQAGWTQERLAEQIGVSTQQIQKYECGTNK-----MNTDRLQQV 57 Query: 62 LAAT 65 A Sbjct: 58 AQAL 61 >gi|332364707|gb|EGJ42476.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 205 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + + Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFDV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKYRRI 82 >gi|323353424|ref|ZP_08087957.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121370|gb|EFX93133.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 205 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + + Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFDV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKYRRI 82 >gi|302532682|ref|ZP_07285024.1| transcriptional regulator [Streptomyces sp. C] gi|302441577|gb|EFL13393.1| transcriptional regulator [Streptomyces sp. C] Length = 191 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 10/164 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ AI ++ + LA ++GL ++ +R PS SI++I A + Sbjct: 12 EVGRAIRECRTARRVSMAVLAARSGLSQPFLSQLERGLAT-----PSLSSIYRIAEALDV 66 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRSP 126 L P G + + + ++ + G + P Sbjct: 67 APGTFLRPPGRPGVVSHESDPQVIRVSEAAGQVARVLIPGGRSALMEAYEHHFEPGQ--G 124 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GD 169 G + +D + + S++ R + L+L + + GD Sbjct: 125 ERGWFEHPGEDFLYVLEG-SVVLEVRGEEPLLLTAGQSAHHRGD 167 >gi|295136229|ref|YP_003586905.1| DNA-binding protein [Zunongwangia profunda SM-A87] gi|294984244|gb|ADF54709.1| putative DNA-binding protein [Zunongwangia profunda SM-A87] Length = 80 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + K I +A+ ++T LA A + + K + P+ ES+ KI Sbjct: 12 MTAIKDIGQALQERRHHMHITQKQLADMADIGINTLYKIETGQAN-----PTIESLQKIA 66 Query: 63 AATNET 68 Sbjct: 67 DVLGME 72 >gi|322418045|ref|YP_004197268.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320124432|gb|ADW11992.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + + +L+ LA K G++P ++ + G PS +++ I Sbjct: 6 ELLGMRIREVRKARHLSQERLAEKVGVEPKQISRIE-----GGKSAPSLDTLEAIAKHLQ 60 Query: 67 ETICQLLDLPFSDGRTTEKKEK 88 + LLD T + Sbjct: 61 VQMKDLLDFQHLVPEETAADQA 82 >gi|229021194|ref|ZP_04177833.1| transcriptional regulator, XRE [Bacillus cereus AH1273] gi|228740088|gb|EEL90446.1| transcriptional regulator, XRE [Bacillus cereus AH1273] Length = 108 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T LA+ L ++ +R R P ++ +I N + Sbjct: 5 GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58 >gi|188491757|ref|ZP_02999027.1| putative DNA-binding protein [Escherichia coli 53638] gi|188486956|gb|EDU62059.1| putative DNA-binding protein [Escherichia coli 53638] Length = 130 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 6/67 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ + N+ S L R+ G+ P S + P + + K+ + + Sbjct: 5 KRLQQVLQELNINQSELGRRLGVKPQSVQGWLKGV------MPRMDKLEKLAELSQHPVH 58 Query: 71 QLLDLPF 77 Sbjct: 59 WFFMEEE 65 >gi|182683999|ref|YP_001835746.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|182629333|gb|ACB90281.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] Length = 177 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 21 IGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 75 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 76 YVDIVGENKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 135 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 136 DLSDLIHTNIYLVETFDE 153 >gi|188591420|ref|YP_001796019.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis] gi|170938815|emb|CAP63813.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 120 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 5/82 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + E L LA+KAG+ P++ + + R PS +++ + + + T Sbjct: 17 SRLRTAREYRGLNQGELAQKAGMQPSAISHFETGT-----RKPSFDNLRILADSLDVTTD 71 Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92 LL Sbjct: 72 YLLGRVEDFKALAGADRLHRHY 93 >gi|218235252|ref|YP_002368031.1| DNA-binding protein [Bacillus cereus B4264] gi|218163209|gb|ACK63201.1| DNA-binding protein [Bacillus cereus B4264] Length = 374 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + F Sbjct: 56 YFNVSIDELICYTPQMEPEGIRNLYHRLAEAFSEEPFDEVMIEC 99 >gi|52842572|ref|YP_096371.1| transposase (IS652) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629683|gb|AAU28424.1| transposase (IS652) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 399 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 18/185 (9%), Positives = 54/185 (29%), Gaps = 7/185 (3%) Query: 11 EAIDRMAER------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 A + + ++ ++ LAR L ++ + +G E R + +T S ++L Sbjct: 102 RASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGL 161 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + + + K + + ++ + + + Sbjct: 162 DEHSFNRKVGYATTFCDLAKHKI-FDVVEGRSEKDLESYLNTLEGKEKVQVVCIDLSSSY 220 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y + +L ++ ++ G ++ ++ K Sbjct: 221 RKLIRHYFPNAMIVADRFHVIRLLNQLCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKR 280 Query: 185 LISRR 189 L R Sbjct: 281 LNRRE 285 >gi|331091384|ref|ZP_08340223.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404248|gb|EGG83795.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] Length = 63 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 14/36 (38%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + L+ LA+K G+ + N + + Sbjct: 5 IRNRRKELGLSQVELAKKCGVSRQTVNAIENNKYDP 40 >gi|268592817|ref|ZP_06127038.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311602|gb|EFE52055.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 109 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S + I ++ ++ ++ + LA G+ S +K +R E + P+ + I Sbjct: 46 PMMSGAQ----IKQLRAQYGMSQAMLALALGMSKESVSKWER--EEKKPSGPALRMLHLI 99 >gi|150020470|ref|YP_001305824.1| cupin 2 domain-containing protein [Thermosipho melanesiensis BI429] gi|149792991|gb|ABR30439.1| Cupin 2, conserved barrel domain protein [Thermosipho melanesiensis BI429] Length = 178 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ I + T LA + L + ++ + + PS +++ +IL Sbjct: 3 KLGSKIRTLRVARGYTQEELADRCDLSRSFISQLENDQV-----SPSIDTLERILRVLGS 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 + + K + +P+ Sbjct: 58 DLKTFFSNDKRQEKIVFKVKDRVPMY 83 >gi|186472983|ref|YP_001860325.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195315|gb|ACC73279.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 204 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ +T L+R AG+ + ++ +R P+ +++ A Sbjct: 26 RVGEQIQRLRNERKMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 80 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L + EIP L + + G + + Sbjct: 81 SLDSLFAPQKAPDPIAVSGPHEIPTLNGHEARYQLRVWGPIELAGK-FEWYEL 132 >gi|9634627|ref|NP_038301.1| ORF1 [Streptococcus phage 7201] gi|7248463|gb|AAF43499.1|AF145054_1 ORF1 [Streptococcus phage 7201] Length = 67 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 18/42 (42%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 I + RHNLT A+ G P + + ++ + + S Sbjct: 10 IKELRARHNLTQEEFAKSVGTTPQTVSAWEKNVLSISPKNMS 51 >gi|82777631|ref|YP_403980.1| hypothetical protein SDY_2416 [Shigella dysenteriae Sd197] gi|110806569|ref|YP_690088.1| hypothetical protein SFV_2693 [Shigella flexneri 5 str. 8401] gi|309785085|ref|ZP_07679718.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|81241779|gb|ABB62489.1| hypothetical protein SDY_2416 [Shigella dysenteriae Sd197] gi|110616117|gb|ABF04784.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|308927455|gb|EFP72929.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|320182378|gb|EFW57276.1| transcriptional regulator, XRE family [Shigella boydii ATCC 9905] gi|332760140|gb|EGJ90437.1| helix-turn-helix family protein [Shigella flexneri 4343-70] gi|333002585|gb|EGK22145.1| helix-turn-helix family protein [Shigella flexneri K-272] gi|333007163|gb|EGK26654.1| helix-turn-helix family protein [Shigella flexneri VA-6] gi|333007242|gb|EGK26726.1| helix-turn-helix family protein [Shigella flexneri K-218] Length = 102 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + LT + +A + G T+ + + G PS ++ K AT Sbjct: 44 AARKEAGLTQAEVAERMGTKATAITRMESNLASG-ISGPSFATLKKFARATG 94 >gi|28211116|ref|NP_782060.1| putative transcriptional regulatory protein [Clostridium tetani E88] gi|28203556|gb|AAO35997.1| putative transcriptional regulatory protein [Clostridium tetani E88] Length = 235 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 13/117 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + NL+ LA +G+ ++ ++ P+ +++KI Sbjct: 59 IAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTN-----PTINTLWKIAKGLKVP 113 Query: 69 I--------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + +E + + S F+ + Sbjct: 114 YTSLLEQKKHDTYVIKKRNIEAQFTEEGHYRVYCYYTSTPYRNFELFQIEIDEGCSY 170 >gi|84687520|ref|ZP_01015396.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84664429|gb|EAQ10917.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 209 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 13/177 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + T A +AGL ++ +K + + P+ E++ K+ Sbjct: 29 DLGERVRDLRKSRGWTLEQAANQAGLARSTLSKIENGQM-----SPTFEALKKLAVGLEI 83 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ QL P + + G +P Sbjct: 84 SVPQLFTPPQDARVSGRMTVTKTG----EGQAHPTATYEHELLAGALTKKAMLPYRARVR 139 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--NCGDRLLIKPRTGDIVA 182 + D + L + LI V GD G V Sbjct: 140 ARSF--DEFDGWVRHDGEEFLYVLTGEIRLITEFYEPVDMRRGDSAYYDASMGHNVI 194 >gi|117924139|ref|YP_864756.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117607895|gb|ABK43350.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] Length = 183 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 19/149 (12%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I ++ + LT LA A + + ++ PS ++KI A +I Q Sbjct: 9 RIRQLRSQRKLTQQALADMAEIPRATLATVEKDDAN-----PSLAVVYKIARALGLSIDQ 63 Query: 72 ---------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + ++ P + F G + P Sbjct: 64 LLVTERERIQVVPADQMRWVETADGRYRAVVVSPGNALHFFQQIFSLQAGAVYEGRPHPP 123 Query: 123 IRSPH----NGIYAIQTQDTRHK-TQDTS 146 + G ++ + + S Sbjct: 124 GSEEYLHVLEGALELELAGECKRLVKGDS 152 >gi|327191185|gb|EGE58228.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 125 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EA+ R+ R ++ +A + P + + G+ P+ + + + Sbjct: 1 MTPF-----GEAVRRLRARKGVSQKEMAAALNVSPAYLSALE----HGKRGLPTFDLLQR 51 Query: 61 ILAATNETICQ 71 I N + Sbjct: 52 IAGYFNIIWDE 62 >gi|299143941|ref|ZP_07037021.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518426|gb|EFI42165.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 178 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 35/112 (31%), Gaps = 5/112 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + LT LA ++ L ++ +R PS ++ IL A Sbjct: 2 DIGNKLKNLRVKQALTQEELADRSELTKGFISQVERNLT-----SPSVATLIDILEALGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 T + + + +K++ + + ++ + Sbjct: 57 TPLEFFEDDVEEKIVFKKEDYFEIVKDDGYKITWIVPNAQKNEMEPIIIELE 108 >gi|254416648|ref|ZP_05030399.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176614|gb|EDX71627.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] Length = 165 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%) Query: 9 IWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKIL 62 +W A I + LT + A++ G+ + + + E E + ++ Sbjct: 97 LWNAELIKALRRHMGLTQAEFAQRMGVRQKTVSNWEIGLYEPPLSTSKHLELVAQLA 153 >gi|219666716|ref|YP_002457151.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219536976|gb|ACL18715.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 110 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + ++H +T LA + G+D T +K + I + I K+L Sbjct: 5 GNTLKNLRKQHKITQRDLAERVGVDFTYISKIETGAIANPPSEKTIIQIAKVL 57 >gi|167740855|ref|ZP_02413629.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167826439|ref|ZP_02457910.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167913192|ref|ZP_02500283.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167921137|ref|ZP_02508228.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217423144|ref|ZP_03454646.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|226193468|ref|ZP_03789073.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254192687|ref|ZP_04899123.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|169649442|gb|EDS82135.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|217394052|gb|EEC34072.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|225934350|gb|EEH30332.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] Length = 202 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 21 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +L P + +IP L + + G + + Sbjct: 76 LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130 >gi|309774779|ref|ZP_07669801.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917464|gb|EFP63182.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 40 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 16/36 (44%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 E I ++ + ++ LA + G+ + +K + Sbjct: 5 ERIQKLRKEKGMSQEELANEIGVSRQAVSKWESEVS 40 >gi|284034061|ref|YP_003383992.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813354|gb|ADB35193.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 201 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 8/133 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + NL+ + LA ++G+ +K +R + P+ + ++ A T Sbjct: 9 LAATLQAARVDRNLSINALAERSGVSRAMISKIERGEAQ-----PTAVLLGRLSGALGLT 63 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ T E + + +G + G V V P Sbjct: 64 LSELVARAEQADGTVELLRRAEDQPLWTDPATGYRRRAVSPAAGGPLELVEVE---LPPG 120 Query: 129 GIYAIQTQDTRHK 141 + K Sbjct: 121 ASVSYPADAYIFK 133 >gi|262201424|ref|YP_003272632.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084771|gb|ACY20739.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 182 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ R R L+ LAR+AG+ ++ ++ + PS E+++ + A Sbjct: 8 VAASLKRERTRAGLSIGELARRAGIGKSTLSQLESGDGN-----PSVETLWALSTALG 60 >gi|83749616|ref|ZP_00946600.1| Hypothetical Protein RRSL_00381 [Ralstonia solanacearum UW551] gi|207724930|ref|YP_002255327.1| hypothetical protein RSMK03396 [Ralstonia solanacearum MolK2] gi|207738753|ref|YP_002257146.1| hypothetical protein RSIPO_03441 [Ralstonia solanacearum IPO1609] gi|83723723|gb|EAP70917.1| Hypothetical Protein RRSL_00381 [Ralstonia solanacearum UW551] gi|206590157|emb|CAQ37118.1| hypothetical protein RSMK03396 [Ralstonia solanacearum MolK2] gi|206592121|emb|CAQ59027.1| hypothetical protein RSIPO_03441 [Ralstonia solanacearum IPO1609] Length = 88 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 19/44 (43%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + +++ + ++ L+ + LA + G+ + + +R Sbjct: 7 RTPEQLPAILKGFRKQAGLSQAELAARMGMRQQTLSALERNAEN 50 >gi|322833728|ref|YP_004213755.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321168929|gb|ADW74628.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 189 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 43/165 (26%), Gaps = 14/165 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------KI 61 ++ E + + + LA+ G+ + ++ +R S ++ Sbjct: 11 RLAERLAELRVSQGWSLEQLAQMTGISRATLSRVERAETSPTASLLGKLSAAYGLTTSRL 70 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L A + +L+ + E + P G SGV G P Sbjct: 71 LMALEDNPPELIRASQQPVWHDRETGFERRSVSAPAPGFRAELISGVLKAGASITYDAPP 130 Query: 122 EIRSPHNGI-------YAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 + + + + R + + + Sbjct: 131 VEGLEQHIWMLEGVLEFVLDGRSYRLE-PGDCLRFHLHGRTSFYV 174 >gi|319936268|ref|ZP_08010686.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] gi|319808644|gb|EFW05188.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] Length = 212 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 5/103 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +++N T LA K G+ + ++ + +P + + KI + +I L Sbjct: 10 LISLRKKYNFTQQDLADKLGISNKTISRWETSES-----YPDIDLLPKIADIFHVSIDYL 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L + G ++ + + Sbjct: 65 LKEHDDFKELDKFDIISYIPWIISLVGVLTYYIFTKLSIPSLF 107 >gi|315644486|ref|ZP_07897618.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315279993|gb|EFU43290.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 272 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 2/106 (1%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I+R + LT LA K G+ + +K + + ++L + Sbjct: 2 RDMLAKNINRYRKERGLTQEALAHKLGVTFQAVSKWETGQTM--PDVALLPELSQLLEVS 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + S E+ + P + + PT Sbjct: 60 MDKLFGYSSTGKSLSIYEEEYKTPDYYWGTEPGAACYQVLEMIPPT 105 >gi|237723180|ref|ZP_04553661.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229447702|gb|EEO53493.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 97 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + +T S LA K G+ S +++ P+ E++ +I A I + Sbjct: 2 RIKEVCKEKGITVSQLAEKMGIKQESLSRAINGN-------PTLETLERIANALEVDITE 54 >gi|161520269|ref|YP_001583696.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344319|gb|ABX17404.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 200 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 14/151 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + +T S LA + G ++ +R P+ + I A Sbjct: 29 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 83 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--------GVPEIR 124 L + E +Y+ + + + + P Sbjct: 84 YSLSKPRSIPWVTRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGASSGERPVDD 143 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 S G + ++ + D Sbjct: 144 SDEQGGFVLEGEL-TIWVDGDDTPVTLGPND 173 >gi|154494195|ref|ZP_02033515.1| hypothetical protein PARMER_03542 [Parabacteroides merdae ATCC 43184] gi|154086057|gb|EDN85102.1| hypothetical protein PARMER_03542 [Parabacteroides merdae ATCC 43184] Length = 111 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E ID + + LA + G+ F+ R ++ +I A + Sbjct: 4 ILENIDTIRRNRGYSQEYLAMQIGMKQAGFSLIMSGE-----RELKYNTLLQIANALQMS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + ++ P +L Sbjct: 59 VIDVITFPDKYVMAKGNGTSTEAVLQI 85 >gi|157370058|ref|YP_001478047.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157321822|gb|ABV40919.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 191 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 13/130 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ L+ LA K+ + + +R S + K+ A N + Sbjct: 21 SNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAG-----DRNVSLAVLDKLADALNISFT 75 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP--------SGSGGFFDSGVFPTGNKWNTVGVPE 122 L+ P + G + + + G +++V E Sbjct: 76 DLIQAPETRGSHLVGELAWQGVQPASQALFAASVPARQRVELWEWTLMPGEHYDSVPDAE 135 Query: 123 IRSPHNGIYA 132 S + A Sbjct: 136 GWSEIIYVIA 145 >gi|19551615|ref|NP_599617.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 469 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 43/172 (25%), Gaps = 13/172 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ +L+ + LA GL + N+ + R + + +I A Sbjct: 2 GSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEAFGVDA 56 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 S + + + V + + Sbjct: 57 TFFSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARAMVEMHQRYRNVRD 116 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 ++I + +T + + +V D + + D + Sbjct: 117 KFSIAVDN---RTNTPEERRPIAEAVSM---PHEEVR--DFIYARQNYFDAL 160 >gi|89896410|ref|YP_519897.1| hypothetical protein DSY3664 [Desulfitobacterium hafniense Y51] gi|89335858|dbj|BAE85453.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 103 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I+ E L+ LA AGL + + + P +++FKIL T Sbjct: 38 IGKLIEA-REAKGLSQKQLADLAGLKQPAIARLESMKAT-----PQIDTLFKILHPLGYT 91 >gi|255025294|ref|ZP_05297280.1| hypothetical protein LmonocytFSL_01392 [Listeria monocytogenes FSL J2-003] Length = 158 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 38/143 (26%), Gaps = 10/143 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + ++ + LA + G ++ R P +++ KI N + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGT-----REPDYQTLLKIAEFFNVSTD 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 LL ++ T + + + N + Sbjct: 59 YLLGRDDNNLADTIAAHIDSNATEEDIKEILAYIEEKRKEHANEKEINITEIASKEDEEI 118 Query: 129 GIYAIQTQDT---RHKTQDTSML 148 + + +D + + + Sbjct: 119 NKFVDENEDFKVVAARVMNDAEA 141 >gi|239942469|ref|ZP_04694406.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239988933|ref|ZP_04709597.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291445925|ref|ZP_06585315.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291348872|gb|EFE75776.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 486 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/148 (10%), Positives = 33/148 (22%), Gaps = 15/148 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R+ + +AR G+ + N+ + R + + +I Sbjct: 16 LRRLRRERGMNQVDMARALGISASYANQIELGQ-----RPLTASVLLQIAKVFGVD---- 66 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY- 131 + G + + V + Y Sbjct: 67 ---AEFFSEAAGDRLAADLRAALADEACGVAVPAVEEIAEAARDHPEVARALVALHHRYR 123 Query: 132 --AIQTQDTRHKTQDTSMLPLYRKGDIL 157 A Q ++LP D + Sbjct: 124 ETAEQAAALASPGTGQTLLPPAEPHDEV 151 >gi|257785053|ref|YP_003180270.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473560|gb|ACV51679.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 364 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 9/81 (11%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +KI + +R+ + LAR+ + S +K + P + I + Sbjct: 1 MLLSEKIMS----LRKRNGWSQEELARQLNVSRQSVSKWESMAS-----MPDIQKIMTMS 51 Query: 63 AATNETICQLLDLPFSDGRTT 83 + LL D T Sbjct: 52 ELFGVSTDYLLKDEMEDLPAT 72 >gi|300361923|ref|ZP_07058100.1| possible signal peptidase I [Lactobacillus gasseri JV-V03] gi|300354542|gb|EFJ70413.1| possible signal peptidase I [Lactobacillus gasseri JV-V03] Length = 216 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186 + + SM P + D +I ++ GD +++ G + K +I Sbjct: 31 FFVLNKFVFANLTVSGISMQPTFENNDRVIALRHAKIKQGDIVIVDAPDEPGALYIKRVI 90 Query: 187 SRRGRSID 194 G ++ Sbjct: 91 GLPGDTVV 98 >gi|226947857|ref|YP_002802948.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226844191|gb|ACO86857.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 130 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 5/90 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ L+ L K + + +K + P E + + ++ +L Sbjct: 7 LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + T + S Sbjct: 62 VMDVKAKESTKTEPLVMNRFETIIDSIDRE 91 >gi|223985127|ref|ZP_03635223.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] gi|223962949|gb|EEF67365.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] Length = 260 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA + G + +K + +P TE I ++ + Sbjct: 4 GEKLFKLRKEKGLSQEALADQLGTTRQAVSKWENNQG-----YPETEKILQLSQLFGVS 57 >gi|218695133|ref|YP_002402800.1| transcriptional repressor DicA [Escherichia coli 55989] gi|253773470|ref|YP_003036301.1| transcriptional repressor DicA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161633|ref|YP_003044741.1| transcriptional repressor DicA [Escherichia coli B str. REL606] gi|297519572|ref|ZP_06937958.1| transcriptional repressor DicA [Escherichia coli OP50] gi|301018731|ref|ZP_07183033.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|331668029|ref|ZP_08368884.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli TA271] gi|218351865|emb|CAU97588.1| HTH-type transcriptional regulator dicA (Repressor protein of division inhibition gene dicA) of prophage [Escherichia coli 55989] gi|242377304|emb|CAQ32048.1| ybl80 [Escherichia coli BL21(DE3)] gi|253324514|gb|ACT29116.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973534|gb|ACT39205.1| prophage CP-9330 DicA-like protein [Escherichia coli B str. REL606] gi|253977729|gb|ACT43399.1| prophage CP-9330 DicA-like protein [Escherichia coli BL21(DE3)] gi|300399570|gb|EFJ83108.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|312946171|gb|ADR26998.1| transcriptional repressor DicA [Escherichia coli O83:H1 str. NRG 857C] gi|323947994|gb|EGB43988.1| helix-turn-helix protein [Escherichia coli H120] gi|331064771|gb|EGI36675.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli TA271] Length = 135 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + + LT AR AG+ + ++ +R + P + +F Sbjct: 1 MDTRT---LGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQ-----PVGKRLFA 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK 88 + A + L+ ++ Sbjct: 53 LADALKCSPTWLMFGDEDKAPVPAQELH 80 >gi|167751035|ref|ZP_02423162.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702] gi|167655953|gb|EDS00083.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702] Length = 226 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I LT +A G+ + + + +P S+ K+ Sbjct: 11 DIGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKS-----YPDIISVIKMSDCYEV 65 Query: 68 T 68 + Sbjct: 66 S 66 >gi|160944203|ref|ZP_02091432.1| hypothetical protein FAEPRAM212_01712 [Faecalibacterium prausnitzii M21/2] gi|158444385|gb|EDP21389.1| hypothetical protein FAEPRAM212_01712 [Faecalibacterium prausnitzii M21/2] gi|295103072|emb|CBL00616.1| Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3] Length = 113 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 5/101 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I++ + LA +GL ++ + +R ++ P+ SI KI A Sbjct: 9 DILGRIEQERLSRGWSEYALAENSGLTQSTISTWRRRNLQ-----PNVASIEKICAGFGI 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 T+ Q S T E+K+ P+ Sbjct: 64 TLSQFFQEEDSVYLTKEQKKLLDLWAKLSPAQREAVTKMLC 104 >gi|29833680|ref|NP_828314.1| regulatory protein [Streptomyces avermitilis MA-4680] gi|29610804|dbj|BAC74849.1| putative regulatory protein [Streptomyces avermitilis MA-4680] Length = 206 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 5/84 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ + T +GL+ G+ ++ ++ + R PS E + I A Sbjct: 25 EVGPRLRRIRKERGATLAGLSEATGISVSTLSRLESG-----LRKPSLELLLPIARAHQV 79 Query: 68 TICQLLDLPFSDGRTTEKKEKEIP 91 + +L+ P K Sbjct: 80 PLDELVGAPPVSDPRVRAKPIVRH 103 >gi|323140942|ref|ZP_08075855.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414680|gb|EFY05486.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 78 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI I + ++T LA + G+ P ++ + G + S ++ KI Sbjct: 7 KKICAKIVFYRKLKSMTQEKLADEVGITPQYLSRIENG---GYTKCVSLSTLMKIAEKLG 63 Query: 67 ETICQLLDLPF 77 T+ +L++ Sbjct: 64 ITMSELMEGVE 74 >gi|297580368|ref|ZP_06942295.1| transcriptional regulator [Vibrio cholerae RC385] gi|297536014|gb|EFH74848.1| transcriptional regulator [Vibrio cholerae RC385] Length = 133 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 8/131 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + L+ +A K + ++ K + E + S + KIL T Sbjct: 2 IGETLKEARAKTKLSQYDMADKLKITKQTYMKWENGITEPKASQIS--ELAKILNITEAE 59 Query: 69 ICQLLDLPFSDGRTT------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 IC+ ++ +E+ +L S + Sbjct: 60 ICRGKLNKRYSLEDFIYRLSCQRPSREMQVLKLWEMISDHEEFFKSLSPESIEEHWEAEA 119 Query: 123 IRSPHNGIYAI 133 + I + Sbjct: 120 EQRYVGDILKV 130 >gi|253750928|ref|YP_003024069.1| DNA-binding protein [Streptococcus suis SC84] gi|253752827|ref|YP_003025967.1| DNA-binding protein [Streptococcus suis P1/7] gi|251815217|emb|CAZ50781.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251819072|emb|CAR44086.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|319757177|gb|ADV69119.1| putative DNA-binding protein [Streptococcus suis JS14] Length = 119 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ + I + NL+ LA K + + +K + P + + ++ Sbjct: 2 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEAT-----PDIDKLVQLAEIFG 56 Query: 67 ET 68 + Sbjct: 57 VS 58 >gi|227513202|ref|ZP_03943251.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227083583|gb|EEI18895.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 132 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H + ++ H LT L +K + S + ++ R PS +S+ + Sbjct: 1 MIHLDFGTRLKQLRTEHKLTQEELGKKINVSKASISLYEKN-----LREPSKDSLVTLAN 55 Query: 64 ATNET 68 N + Sbjct: 56 FFNVS 60 >gi|282600828|ref|ZP_05979816.2| conserved domain protein [Subdoligranulum variabile DSM 15176] gi|282571049|gb|EFB76584.1| conserved domain protein [Subdoligranulum variabile DSM 15176] Length = 82 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++T LA G+ + N ++ +SI K L T + + Sbjct: 24 LKAARAEKDMTQGALAEAVGVSRQTINAIEKGEYNPTINL--CKSICKALDKTLDDLFW 80 >gi|239820607|ref|YP_002947792.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805460|gb|ACS22526.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 9/95 (9%), Positives = 34/95 (35%), Gaps = 5/95 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S +I + + +++ LA+ +G+ + ++ +R + PS E++ ++ Sbjct: 1 MSAARIGAQVKALRMAADVSGGALAKTSGISASMLSRIERGLV-----SPSVETLERLAN 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 + + ++ ++ + Sbjct: 56 GLGVPASRFFGDQARRTDFCHVRARQGVVVDRIGA 90 >gi|187777166|ref|ZP_02993639.1| hypothetical protein CLOSPO_00711 [Clostridium sporogenes ATCC 15579] gi|187774094|gb|EDU37896.1| hypothetical protein CLOSPO_00711 [Clostridium sporogenes ATCC 15579] Length = 393 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/133 (9%), Positives = 30/133 (22%), Gaps = 5/133 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + LT + LA K L + + + + P +I K+ Sbjct: 10 GERLKAARIYRGLTVAELAEKLELQRQTVSMYENN----KLNNPELVTIAKMSTVLGFPK 65 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHN 128 L+ + + + + + + P P Sbjct: 66 KFFLENDKIGIKNGSTYFRALLTTSKKYRNEQTQKVDFIIKLFRYLNDYIEFPVTNLPPG 125 Query: 129 GIYAIQTQDTRHK 141 + + Sbjct: 126 NYSNPEEAAIVLR 138 >gi|325289460|ref|YP_004265641.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964861|gb|ADY55640.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 343 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I + + NLT +A++ G+ + NK + P + I N Sbjct: 2 RVGNVIRKYRKDKNLTQEEMAKRLGVTAPAVNKWENGYS-----LPDISLLSPIARLLNI 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|298383894|ref|ZP_06993455.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|298263498|gb|EFI06361.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 102 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E + + +T LA K G + ++ + + ++FKI Sbjct: 42 IGERLKAERLKAGMTQEQLAAKIGTKKSYISRIENGHAD-----IQLSTLFKIFQGLG 94 >gi|229140248|ref|ZP_04268805.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] gi|228643181|gb|EEK99455.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] Length = 277 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 35/140 (25%), Gaps = 6/140 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ ++ + G S G + Sbjct: 69 FEVSL-DYLLKENAEQSNEKENGYYVSKEMAEGYIVYGEKISKYIALGFSLLILSTIPYL 127 Query: 125 SPHNGIYAIQTQDTRHKTQD 144 + Sbjct: 128 LFKEDVTMSTFLVIIIAVFG 147 >gi|191637076|ref|YP_001986242.1| Type I signal peptidase-like protein [Lactobacillus casei BL23] gi|227534606|ref|ZP_03964655.1| type I signal peptidase family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631082|ref|ZP_04674113.1| signal peptidase I [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065401|ref|YP_003787424.1| signal peptidase I [Lactobacillus casei str. Zhang] gi|190711378|emb|CAQ65384.1| Type I signal peptidase-like protein [Lactobacillus casei BL23] gi|227187762|gb|EEI67829.1| type I signal peptidase family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527365|gb|EEQ66366.1| signal peptidase I [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437808|gb|ADK17574.1| Signal peptidase I [Lactobacillus casei str. Zhang] gi|327381103|gb|AEA52579.1| Signal peptidase I [Lactobacillus casei LC2W] gi|327384278|gb|AEA55752.1| Signal peptidase I [Lactobacillus casei BD-II] Length = 199 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 18/94 (19%) Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSI-----D 194 Q TSM P GD L + D ++I R G + K +I G ++ Sbjct: 39 VQGTSMQPTLENGDRLYSIRVKKPKRNDIVVINAPDRPGSLYIKRVIGMPGDTVSSKDNQ 98 Query: 195 LMSLNCC-----YPVDTVEMSDIEWIARILWASQ 223 L S+N Y +I WASQ Sbjct: 99 L-SVNGKKIAEPYLNKKFATDEINK-----WASQ 126 >gi|325695606|gb|EGD37506.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 113 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E + + ++ LT S +A K + ++ +R + P+ E++ KI N Sbjct: 4 GERLKILRKQVKLTQSQIAEKLDISQQAYASWERGVKK-----PTQENLIKIAQILN 55 >gi|319442546|ref|ZP_07991702.1| putative regulatory protein [Corynebacterium variabile DSM 44702] Length = 104 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ I + + +++ + LA G++P + +R + PS + F+ Sbjct: 1 MSPKKKAVIHNRVRVLRAERDMSRAQLAELIGVNPQTVGALERG-----DHSPSLDLAFR 55 Query: 61 ILAAT 65 I Sbjct: 56 ICEIF 60 >gi|310830109|ref|YP_003962466.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308741843|gb|ADO39503.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 111 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + +LT + LA+KAG+ PT + +R + P E+ + + + Sbjct: 6 LGQRLRQFRKDAHLTQNQLAKKAGITPTYLSIIERGA-----QLPRLETFINLANVLSVS 60 Query: 69 ICQ 71 Sbjct: 61 ADD 63 >gi|308176150|ref|YP_003915556.1| DNA polymerase subunit UmuD [Arthrobacter arilaitensis Re117] gi|307743613|emb|CBT74585.1| putative DNA polymerase subunit UmuD [Arthrobacter arilaitensis Re117] Length = 138 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 3/101 (2%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177 + + + + +M GD +I++ ++ V G ++I Sbjct: 32 YFDGGLDLNRLLVRDRVSTFIMRVSGNAMQSAGIHDGDEVIVDRSLSVRHGS-VVIVNLN 90 Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 G ++ + G+ + L+S PV E ++ I Sbjct: 91 GQMLVRRWQ-IDGQEVGLLSDESPLPVVLTEGDEVNVFGVI 130 >gi|284045383|ref|YP_003395723.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949604|gb|ADB52348.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 253 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + + R E + LAR+ G+ P+ + + PS ++++I+ N Sbjct: 21 KDVGARLRRDREARGVGVRELARRIGVSPSLISAIELGKAN-----PSIGTLYQIVDELN 75 Query: 67 ETICQLL 73 ++ +L+ Sbjct: 76 LSVDELM 82 >gi|261492432|ref|ZP_05988988.1| hypothetical protein COK_0856 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496386|ref|ZP_05992780.1| hypothetical protein COI_2118 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307971|gb|EEY09280.1| hypothetical protein COI_2118 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311891|gb|EEY13038.1| hypothetical protein COK_0856 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 132 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + NL+ +A K GL ++ ++++R G + R E + KI T Sbjct: 70 EQNINNLGAWRIYRNLSQQEVAEKTGLSQSAISQAERKGNRPQKRT--REKLAKIYGCTP 127 >gi|297543547|ref|YP_003675849.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841322|gb|ADH59838.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 129 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + ++ +T LA G+ + + R P + + KI N + Sbjct: 2 LGERIKELRKKKGVTQKELALYLGVSDRAVGYYESGQ-----RTPPPDILQKIADFFNVS 56 Query: 69 ICQLLDLPFSDGRT 82 + LL T Sbjct: 57 VDYLLGRTGVYNPT 70 >gi|254819794|ref|ZP_05224795.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950] Length = 471 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 26/102 (25%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L + P Sbjct: 61 ATFFSSQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVSAHP 102 >gi|225570544|ref|ZP_03779569.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] gi|225160741|gb|EEG73360.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] Length = 367 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 15/39 (38%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I + I + +T LA G+ +S +K + Sbjct: 5 NIGKNIMKYRRETGITQEQLAEHMGVSKSSVSKWETGNA 43 >gi|167572260|ref|ZP_02365134.1| aldehyde dehydrogenase-like protein [Burkholderia oklahomensis C6786] Length = 170 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 19/183 (10%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 ++ L+ LA++AG+ + + ++ PS S+ K+L ++ + Sbjct: 2 KYGLSQRELAKRAGVTNGTISLIEQ-----SRVSPSVGSLKKLLECIPMSLAEFFTFEVD 56 Query: 79 DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138 + R+ + E+P L G V P + + A + Sbjct: 57 EDRSVVSRRGEMPNLGNDAIGFYLAGSGVKDRNMCIMREVYQP-LADTGTEMLAHAGHEG 115 Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI-DLMS 197 L + G +L+ GD + R + + +++S Sbjct: 116 GVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFRNPSAEHVCEVVS 163 Query: 198 LNC 200 N Sbjct: 164 ANS 166 >gi|13475454|ref|NP_107018.1| hypothetical protein mlr6529 [Mesorhizobium loti MAFF303099] gi|14026206|dbj|BAB52804.1| mlr6529 [Mesorhizobium loti MAFF303099] Length = 514 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Query: 2 TSFSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 S + +KI+ I R+ LT + +A G+ P+ N +R R + + I Sbjct: 31 KSMAEQKIFAGPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQ-----RPLTVQLIL 85 Query: 60 KILAATNETICQ 71 K+ + + Sbjct: 86 KLASVYKVDPHE 97 >gi|311069889|ref|YP_003974812.1| putative transcriptional repressor [Bacillus atrophaeus 1942] gi|310870406|gb|ADP33881.1| putative transcriptional repressor [Bacillus atrophaeus 1942] Length = 139 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 4/72 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + + +LT + LA +G+ + ++ + G+ P +I K+ Sbjct: 5 GEQLRALRKARHLTVNQLAIYSGVSSATISRIEN----GKRGIPKPATIRKLADTLKMPY 60 Query: 70 CQLLDLPFSDGR 81 L+ Sbjct: 61 ENLMAAAGHITP 72 >gi|313115454|ref|ZP_07800921.1| signal peptidase I [Faecalibacterium cf. prausnitzii KLE1255] gi|310622221|gb|EFQ05709.1| signal peptidase I [Faecalibacterium cf. prausnitzii KLE1255] Length = 196 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 + SM P + DI++L + GD ++ K +I G I+L Sbjct: 58 VLQVSGDSMNPTLQDRDIILLVKGSDMKTGDLC-GFYWQNKLLLKRIIGLPGDVIEL 113 >gi|302337267|ref|YP_003802473.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634452|gb|ADK79879.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 222 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I +HN+ S LA GL ++ ++ +R I PS ++ KI A N Sbjct: 14 LGSRIRAQRNKHNMKISELAELTGLTSSTISQVERALI-----SPSIATLKKICDAMNIP 68 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91 I L D + +E+ Sbjct: 69 ISFLFDGVEENDSQSEENVVTQD 91 >gi|300933761|ref|ZP_07149017.1| putative transcriptional regulator RamB [Corynebacterium resistens DSM 45100] Length = 497 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/128 (10%), Positives = 35/128 (27%), Gaps = 5/128 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + +L+ + LA K G+ + N+ + +R + + K+ A Sbjct: 8 VGSRLRELRKDRSLSQAQLAEKLGISASYVNQIEHN-----SRPLTLAVLDKLTATFGVD 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + P D V + + Sbjct: 63 ATFFSRGDATRLLAEVQDVVHDREVCPTPVDVAELADLVKNHPTLARAMVEMHSRYRNVS 122 Query: 129 GIYAIQTQ 136 ++ T Sbjct: 123 DKLSLATD 130 >gi|228938970|ref|ZP_04101570.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971851|ref|ZP_04132472.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978459|ref|ZP_04138836.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228781476|gb|EEM29677.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228787941|gb|EEM35899.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820819|gb|EEM66844.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939471|gb|AEA15367.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 149 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I E + ++ E + +A+K G+ + K + Sbjct: 3 IGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS 40 >gi|168702699|ref|ZP_02734976.1| putative transcriptional regulator [Gemmata obscuriglobus UQM 2246] Length = 84 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ E + + E ++ LA AGL T + +R R S E+I ++ A Sbjct: 14 ERFGERLREVREGAGISQERLAELAGLHRTYVSSVERG-----KRNISLENIERLAVALE 68 Query: 67 ETI 69 + Sbjct: 69 VEM 71 >gi|196048466|ref|ZP_03115641.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] gi|196020723|gb|EDX59455.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] Length = 114 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ + +LT + LA L + + + P E++ I + N ++ Sbjct: 5 GQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQ-----PDIETLASIASFFNVSL 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYF 95 L+ + ++ + Sbjct: 60 DVLVGFSNNFMDEPIQQVISEARSTY 85 >gi|163797631|ref|ZP_02191580.1| putative transcriptional regulator [alpha proteobacterium BAL199] gi|159177106|gb|EDP61668.1| putative transcriptional regulator [alpha proteobacterium BAL199] Length = 199 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 16/175 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + R +A AG+ T+ ++ + +E PS E + ++ + Sbjct: 2 KIGPLLKRARTLRRWKQQAVADLAGVAQTTVSRWESGAVE-----PSAEQVRRLAPVLSS 56 Query: 68 TICQLLDLPFSDGRTTEKKEKE--IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 D T L + + S + P + P Sbjct: 57 VSDLARDSGLRRLVVTSPLPVHLICDLTHRLLAASPAREAEWLVPASDLHGEPLFPFATD 116 Query: 126 PHN---------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 G +A T + R + + +N G + Sbjct: 117 EIREAESRLDGIGWFADATTGAVLWVRGRERATTIRMVAGYCIWERLTLNDGSPV 171 >gi|332142476|ref|YP_004428214.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552498|gb|AEA99216.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 175 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/157 (8%), Positives = 47/157 (29%), Gaps = 9/157 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + ++ + ++ S LA AG+ ++ ++ ++ P+ ++I++ Sbjct: 1 MNQATLNILGRHLKKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGN-----PTLDTIWR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + QL+ + + + + ++ + Sbjct: 56 LAKQLDVPFGQLVQPLSTSVGENGVEVRLIEQGQGVPNVDAYWMSVAPNTRREAEAHATE 115 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153 T + S I + Q + Sbjct: 116 TQETITVISGTLEAGNIGSTQLLLPGQSIAFSADLPH 152 >gi|296271002|ref|YP_003653634.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093789|gb|ADG89741.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 406 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 8/123 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + ++ + LA +AGL K + G E++ + Sbjct: 1 MTGYDDPGAQLRALRQQLGWSQEELANRAGLSTGVIKKIEGGGTA------RMETLRALA 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A + T + L + G + V +P Sbjct: 55 RALGVHTVWFVRPGSP--APTVDNGNDAVLADMRAAILPPVGLDGRPLGTADHDDVHLPR 112 Query: 123 IRS 125 + Sbjct: 113 LAD 115 >gi|325674855|ref|ZP_08154542.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325554441|gb|EGD24116.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 196 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 7/136 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + ++ T S LA G+ ++ ++ + R P+ E + + A Sbjct: 12 DAVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQ-----RKPNLELLLPLARAYG 66 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS--GSGGFFDSGVFPTGNKWNTVGVPEIR 124 + +L+ P + K P GG G + V + Sbjct: 67 VPLDELVGAPETGDPRIHLKPITRGGKTIVPLTRRPGGIQAYKHVIPGARGPQVPDLRVH 126 Query: 125 SPHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 127 EGYEWLYVLNGKLRLV 142 >gi|295099455|emb|CBK88544.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 124 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 5/93 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ I + + LT LA + + +R PS E + N Sbjct: 5 KELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKN-----PSFEVLRAFCKVLN 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 ++ L++L + +++ L P + Sbjct: 60 LSLDSLMNLDLPEDEQAANDMRQLYLSCPPAAR 92 >gi|225387540|ref|ZP_03757304.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] gi|225046376|gb|EEG56622.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] Length = 300 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 5/91 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + ++ ++ LA + + + K + P E++ I A ++ Sbjct: 4 ETIKTLRKQAGMSQEQLAGRLNVSRQAVTKWETAAGT-----PDVENLRAISALFQISLD 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 LL+ E + + Sbjct: 59 DLLENRSPIPPEQEFRFHSVTEYDIDSIKDF 89 >gi|163814538|ref|ZP_02205927.1| hypothetical protein COPEUT_00689 [Coprococcus eutactus ATCC 27759] gi|158450173|gb|EDP27168.1| hypothetical protein COPEUT_00689 [Coprococcus eutactus ATCC 27759] Length = 293 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 34/183 (18%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +KI+ +D + N++ S L+R+ G+ ++ N K+ + P + + I A + Sbjct: 11 EKIFARLDEL----NMSQSELSRRTGISTSTINDWKK-----KKINPQADKLVAICKALD 61 Query: 67 ETICQLLDLPF-SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ LL T E++ + + S + + + + Sbjct: 62 MSLADLLGEDGAESSGTDYSAEEKYLVECYRRSDNYVRRHMLR--------YMELIDNVE 113 Query: 126 PHNGIYAIQTQDTRHKTQDTS---MLPLYRKGDILILNSAIQ-------------VNCGD 169 P+ + + + + KG I ++ GD Sbjct: 114 PNEMKTPQRNVAVIQDVDGNNIVFINDIIFKGKRSITWPDVEEYLRQNVGEFYSIAETGD 173 Query: 170 RLL 172 + Sbjct: 174 IVY 176 >gi|160914122|ref|ZP_02076344.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] gi|158433933|gb|EDP12222.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] Length = 124 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 5/93 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ I + + LT LA + + +R PS E + N Sbjct: 5 KELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKN-----PSFEVLRAFCKVLN 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 ++ L++L + +++ L P + Sbjct: 60 LSLDSLMNLDLPEDEQAANDMRQLYLSCPPAAR 92 >gi|54026486|ref|YP_120728.1| hypothetical protein nfa45130 [Nocardia farcinica IFM 10152] gi|54017994|dbj|BAD59364.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 201 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 15/135 (11%), Positives = 44/135 (32%), Gaps = 6/135 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + ++ T L+ G+ ++ ++ + R P+ E + + A Sbjct: 6 EAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGA-----RRPTLELLLPLARAHG 60 Query: 67 ETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 T+ +L+D P + + + P + G + P+ Sbjct: 61 VTLDELVDAPPTGDPRVHLRPVTRNGMTMLPLTRRPGGIQAYKLIIPPDTRRTPDPKTHE 120 Query: 126 PHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 121 GYEWLYVLNGRLRLI 135 >gi|150388718|ref|YP_001318767.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948580|gb|ABR47108.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 101 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + LA++ + + + + R PS ++ + N + Sbjct: 3 RIKELRQEKDFSQIQLAKQFDITQQTISNYESGV-----REPSITTLKNLADFFNVS 54 >gi|317502547|ref|ZP_07960684.1| hypothetical protein HMPREF1026_02630 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896054|gb|EFV18188.1| hypothetical protein HMPREF1026_02630 [Lachnospiraceae bacterium 8_1_57FAA] Length = 138 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + N+T + LA++ G+ + + R+ E + +I + + L Sbjct: 4 IKELRKEKNITVAELAKELGISQSMLTNYENGNGTPRDESI-WEKLSQIFGVSKSHVMGL 62 Query: 73 LDLPF 77 Sbjct: 63 TTDIE 67 >gi|332652846|ref|ZP_08418591.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517992|gb|EGJ47595.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 149 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 8/147 (5%), Positives = 34/147 (23%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++ ++ L+ +A K G+ + +K + R ++ + Sbjct: 3 LGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYHMTLDELI 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + E + + + + T + Sbjct: 63 EYDFDEQQAQQMIDSVSDEAQARIDWNKVWSKKYPVLATYHKTVRINDYAPALREMLTQL 122 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGD 155 + + +++ Sbjct: 123 RVDYGYNNTDALLVLKDILARVWKGQM 149 >gi|254712684|ref|ZP_05174495.1| hypothetical protein BcetM6_04806 [Brucella ceti M644/93/1] gi|254715754|ref|ZP_05177565.1| hypothetical protein BcetM_04816 [Brucella ceti M13/05/1] gi|256015686|ref|YP_003105695.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|261217515|ref|ZP_05931796.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261320390|ref|ZP_05959587.1| transcriptional regulator [Brucella ceti M644/93/1] gi|255998346|gb|ACU50033.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|260922604|gb|EEX89172.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293080|gb|EEX96576.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 182 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|228948403|ref|ZP_04110686.1| hypothetical protein bthur0007_45290 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811390|gb|EEM57728.1| hypothetical protein bthur0007_45290 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 206 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 48/175 (27%), Gaps = 16/175 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I ++ + L+ A G+ ++ + G N+ PS E + K+ + Sbjct: 5 ELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLE----TGSNKKPSIEILEKLALGLDL 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L L + + + + + Sbjct: 61 HNNYLTYLAGYYKMPHIE-----YDENLTDEEKEEKIWAEIHKVDGGFTNNPFDILSPYP 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ KT + + +I++ +VN + + + Sbjct: 116 QAAQYNDDKNKLFKTATLACEH--NQPFPIIVDKENKVN-----IEVYKENGLTL 163 >gi|268591033|ref|ZP_06125254.1| putative HTH-type transcriptional regulatory protein [Providencia rettgeri DSM 1131] gi|291313839|gb|EFE54292.1| putative HTH-type transcriptional regulatory protein [Providencia rettgeri DSM 1131] Length = 90 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 5/35 (14%), Positives = 18/35 (51%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I ++ ++ ++ + LA+K + ++ +R + Sbjct: 15 IKKLRKKKGISGAELAKKLNVSQQQVSRYERGATK 49 >gi|169343424|ref|ZP_02864427.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] gi|169298510|gb|EDS80596.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] Length = 182 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI ++ + + H+LT +A+ + +++ + R PS E + KI N Sbjct: 8 KIGNSLKEIRKNHSLTQEEMAKALNIPRSTYANYENN-----KREPSKELLEKISEVFNI 62 Query: 68 TICQ 71 + Sbjct: 63 PLID 66 >gi|167771744|ref|ZP_02443797.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] gi|167666384|gb|EDS10514.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] Length = 132 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KKI I + + +LT LA + + +K + P + + Sbjct: 1 MDQKKIGAFIAQCRKEKSLTQIQLAELLDITNQAVSKWENGRG-----MPDVSLLQPLCD 55 Query: 64 ATNETICQLLDLPF 77 A ++ +L Sbjct: 56 ALGISLNELFSGEH 69 >gi|67480965|ref|XP_655832.1| Helix-turn-helix protein [Entamoeba histolytica HM-1:IMSS] gi|56472996|gb|EAL50446.1| Helix-turn-helix protein, putative [Entamoeba histolytica HM-1:IMSS] Length = 125 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Query: 2 TSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 T HK++ I R + +LT LA+K P + + PS + Sbjct: 55 TPLVHKQVSHKVSLEIQRARQEKHLTQKELAQKINEKPQTIADYESGKAI-----PSQQV 109 Query: 58 IFKILAATN 66 + K+ Sbjct: 110 LAKLERILG 118 >gi|332798977|ref|YP_004460476.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696712|gb|AEE91169.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 131 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 7/112 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I ++ L+ LA+ + P++ + R P ++ N + Sbjct: 4 DRIRKLRNDKGLSQRELAKMLKISPSTIAMYELG-----KREPDIAMFQRLADFFNVPVE 58 Query: 71 QLL--DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +++ +I L F + S K + + Sbjct: 59 YVMGVSDEPKPWWEKDEEPTDIELEEFIKNNSNIKLMGDPLDEKAKDDVLMF 110 >gi|222080797|ref|YP_002542525.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221725476|gb|ACM28565.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 189 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 13/123 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ + L+ + LA +G+ + S S+ K+ AA Sbjct: 20 NLRRLRKSAGLSQTALAEASGISRRMIIAVEAGDAN-----ISLSSLDKLAAALGVDFVD 74 Query: 72 LLDLPFSDGRTTEKKEKEI--------PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L+ P R + LL P+ G++++ P+ Sbjct: 75 LVRDPTRASRADINQVTWRGKDGESLAVLLGSAPASLETQMWLWSLGPGDRYDAEPDPQG 134 Query: 124 RSP 126 Sbjct: 135 WHE 137 >gi|182416559|ref|ZP_02947984.1| immunity repressor protein [Clostridium butyricum 5521] gi|237667186|ref|ZP_04527170.1| DNA-binding phage protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379631|gb|EDT77113.1| immunity repressor protein [Clostridium butyricum 5521] gi|237655534|gb|EEP53090.1| DNA-binding phage protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 118 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I I+ + +L+ LA K + + ++ R P E + +I A Sbjct: 2 KTIGRKIEERLQELDLSQKDLADKVNVTEATISRYITGT-----RSPRGEILSRIAVALG 56 >gi|166032705|ref|ZP_02235534.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] gi|166027062|gb|EDR45819.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 4/57 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M +I I ++ ++ LA K + + ++ + S Sbjct: 1 MIM----EIKNIILKLRTERGMSQDELADKIMVTRQAVSRWENGATVPNTDTLKLLS 53 >gi|160872014|ref|ZP_02062146.1| helix-turn-helix domain protein [Rickettsiella grylli] gi|159120813|gb|EDP46151.1| helix-turn-helix domain protein [Rickettsiella grylli] Length = 242 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 71/227 (31%), Gaps = 18/227 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +K+ + + + + +L+ A+ L T+ N ++ R + + + Sbjct: 17 LINKERAQRLKYLRKMSHLSMKEFAQLCNLGTTTINYWEQGYSNLSERGAR--KVCQAIG 74 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A + L ++ L + S + E Sbjct: 75 AEGIDCSTIWLLTGYGEAPCVIDSSKLSKLNYEKFKSLSKNFINEKKPHYSIENKDIKEE 134 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKPRTGD 179 + Y + + SM PLY GD++ + ++ G +++ + + Sbjct: 135 LAIFKKNY---PEHLICSVDNESMKPLYNPGDLVAGKKLTGKNKELAHGADCIVELKNKE 191 Query: 180 IVAKVLIS-RRGRSIDLMSLNC----CYPVD----TVEMSDIEWIAR 217 ++ + + S DL +N +P V ++ I I + Sbjct: 192 LIIRRIKIAHAAESFDLFVINSETSLEFPPLRNISVVSLAPIIRIWK 238 >gi|163847710|ref|YP_001635754.1| cupin 2 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525574|ref|YP_002570045.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668999|gb|ABY35365.1| Cupin 2 conserved barrel domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449453|gb|ACM53719.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 211 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 5/93 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + E+ L+ LA +GL + + + PS ++ ++ A Sbjct: 18 DVGTRIRTLREQRRLSIRALAEASGLAVNTLSLIENGRT-----SPSVSTLQRLAVALQV 72 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + R + FP Sbjct: 73 PVSTFFTPDVPQQRIVFTPAGQAIASLFPHGAM 105 >gi|53716036|ref|YP_104861.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53721043|ref|YP_110028.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642050|ref|ZP_00440812.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|121596499|ref|YP_990749.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381530|ref|YP_001025232.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126447905|ref|YP_001077212.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134283993|ref|ZP_01770688.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|166998988|ref|ZP_02264838.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167821625|ref|ZP_02453305.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|254179132|ref|ZP_04885785.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254204277|ref|ZP_04910635.1| DNA-binding protein [Burkholderia mallei FMH] gi|254209445|ref|ZP_04915790.1| DNA-binding protein [Burkholderia mallei JHU] gi|254301893|ref|ZP_04969335.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|254359589|ref|ZP_04975861.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52211457|emb|CAH37447.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422006|gb|AAU45576.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121224297|gb|ABM47828.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126240759|gb|ABO03871.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134244604|gb|EBA44703.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|147744814|gb|EDK51896.1| DNA-binding protein [Burkholderia mallei FMH] gi|147749965|gb|EDK57037.1| DNA-binding protein [Burkholderia mallei JHU] gi|148028776|gb|EDK86736.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157825063|gb|EDO88955.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|160694650|gb|EDP84659.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238523111|gb|EEP86551.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243064807|gb|EES46993.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|261826366|gb|ABM99779.2| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 202 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 21 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +L P + +IP L + + G + + Sbjct: 76 LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130 >gi|332877406|ref|ZP_08445153.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684512|gb|EGJ57362.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 96 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + LT LA K G+ S NK+ R +P +S+ +I A I Sbjct: 5 ARIKELCQSKGLTQKDLADKMGISDISLNKTLRGD------YPQLQSLERIANALEVDIA 58 Query: 71 Q 71 + Sbjct: 59 E 59 >gi|300697899|ref|YP_003748560.1| DNA-binding transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074623|emb|CBJ54176.1| DNA-binding transcriptional regulator [Ralstonia solanacearum CFBP2957] Length = 88 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 19/44 (43%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + +++ + ++ L+ + LA + G+ + + +R Sbjct: 7 RTPEQLPAILKGFRKQAGLSQAELATRMGMRQQTLSALERNAEN 50 >gi|296140867|ref|YP_003648110.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029001|gb|ADG79771.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 183 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I R R + + LAR+A + ++ ++ + PS E+++ + A Sbjct: 9 IAAGIQRERTRAGWSMAELARRANIAKSTLSQLEAGTGN-----PSVETLWALATALEIP 63 Query: 69 ICQ 71 Q Sbjct: 64 FAQ 66 >gi|227325994|ref|ZP_03830018.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 201 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ +I R ER NL+ + LA++AGL ++ ++ + PS E+++ + A + Sbjct: 26 RLAVSIRRERERLNLSVTELAKRAGLAKSTLSQLESGVGN-----PSLETLWALAMALDV 80 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + QL+ + E Sbjct: 81 QVSQLIGQSRQHVQVIRANEGATTY 105 >gi|226322751|ref|ZP_03798269.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] gi|225208912|gb|EEG91266.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] Length = 313 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + + NLT LA K + + ++ + P + ++ + Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFEVSARTVSRWETGIN-----MPDLSILVQLAEYYD 58 Query: 67 ETICQ 71 I + Sbjct: 59 VEIRE 63 >gi|115334658|ref|YP_764504.1| immunity repressor protein [Geobacillus phage GBSV1] gi|84688608|gb|ABC61304.1| immunity repressor protein [Geobacillus phage GBSV1] Length = 148 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 9/117 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + LT L RK + S + + R P +++ + A + +I Sbjct: 5 QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGN-----RTPDMDTLKALADALDVSID 59 Query: 71 Q----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 P ++ E + G F + + E Sbjct: 60 YLLGRDNTQPTDTKLPALTEKDERDIQKELEKIINGLKTGSGFAAFGGVDIDELDEE 116 >gi|330898914|gb|EGH30333.1| prophage PSPPH01, Cro/CI family transcriptional regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 78 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 151 YRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 +G ++++++ I+ ++ P + + K L+ L LN YP V Sbjct: 5 IPEGMLILVDTGIEPTASKLVIAKLPESNEATFKKLVED-AGRYFLKPLNPAYPTLAVT- 62 Query: 210 SDIEWIARI 218 + + I I Sbjct: 63 EECKLIGVI 71 >gi|325290667|ref|YP_004266848.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966068|gb|ADY56847.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 199 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 16/41 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + I + + ++ LA K G+ + +K + Sbjct: 2 NIADRIQNLRKAKAISQEDLADKVGVSRQAVSKWESEQSVP 42 >gi|318061096|ref|ZP_07979817.1| putative transcriptional regulator [Streptomyces sp. SA3_actG] Length = 243 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + LAR+A L ++ ++ + R S ++ + L + + Sbjct: 12 VRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQR--RLALDSLVTLARALDTSLDQ 69 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + ++ G P + Sbjct: 70 LVETASDDVVTNPMIDGARGQMRWPVKADPGLTVVRQRMTEPPPD 114 >gi|313680627|ref|YP_004058366.1| helix-turn-helix domain protein [Oceanithermus profundus DSM 14977] gi|313153342|gb|ADR37193.1| helix-turn-helix domain protein [Oceanithermus profundus DSM 14977] Length = 130 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 5/109 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + +A GL + +R PS E++ + A Sbjct: 2 KLAERFRELRKERGWRLKDVAEATGLSIPYLSDLERDRTN-----PSLETLRTLAEAYGM 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 ++ L+ G T G T ++ Sbjct: 57 SVHDLMAPVDFYGERTPAALPRGLAELLEDPVLGAEITPDWVETLSRIE 105 >gi|294629979|ref|ZP_06708539.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14] gi|292833312|gb|EFF91661.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14] Length = 101 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +A+ +T S LA +AG+ + ++ + G P E + L +T Sbjct: 28 GKAVRDRRTALGMTQSRLAARAGMTQAAVSRLEHGGSTPTI--PLLERLAAALDSTLH 83 >gi|291561272|emb|CBL40071.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 117 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 5/95 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I + ++ LT L G+ SF+K K+ PS E++ ++ + + Sbjct: 4 LERILELQKQSGLTVKALEAATGISNGSFSKWKKGTY-----APSAEAVLRLAKYFHVST 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 L L S E E + + Sbjct: 59 DYLFCLSDSPYPKVEISLTEKEKILIDAYRAADDM 93 >gi|258510225|ref|YP_003183659.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476951|gb|ACV57270.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 106 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 7/105 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++T + LAR G+ + +R R P+ + I +A + + Sbjct: 5 GRRLRAFRKLKHMTQADLARALGVSLATIGGIERGT-----RQPTAHLVSAIASALSVDV 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +L + D P Sbjct: 60 EELCGPT--WPGDGWDRGAAEDAADSRAGHGHATVDGPHSPLDQG 102 >gi|284034787|ref|YP_003384718.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283814080|gb|ADB35919.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 119 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I R+ +T LA A + ++ +R E PS+E + I Sbjct: 1 MLLRQVIGNVFRRLRRERGITLRELAELAQVSVPYLSEIERGRKE-----PSSEILAAIC 55 Query: 63 AAT 65 A Sbjct: 56 RAL 58 >gi|221316986|ref|YP_002533130.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1] gi|221243318|gb|ACM16026.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1] Length = 112 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 2/56 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 E I ++ + T L G + + + R S +L T Sbjct: 3 GERIKQLRKARGWTQDDLGEAVGFKKATISLIENNKRNREER--SVTKFADVLDCT 56 >gi|149004413|ref|ZP_01829153.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] gi|147757662|gb|EDK64680.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] Length = 120 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 3/59 (5%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + L+ +A++ + + ++ + + + E + ++ + Sbjct: 1 MNRLKELRQEKKLSQKEIAKEMSISEKTLSRWENGESQIKP-----EKVKQLADYFGVS 54 >gi|159045029|ref|YP_001533823.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12] gi|157912789|gb|ABV94222.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12] Length = 467 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 9/97 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +F I + R+ N T + +A+ G+ + N ++ R S + + Sbjct: 1 MKTF----IGPRLRRLRRDANQTQAEMAKALGISNSYVNMLEKNE-----RSVSVPVLLR 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + A + D + + + PL + Sbjct: 52 LFEAYGVDWRDIADEDDTATLNALRAAFQDPLFHDHS 88 >gi|118465480|ref|YP_883812.1| DNA-binding protein [Mycobacterium avium 104] gi|254777121|ref|ZP_05218637.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118166767|gb|ABK67664.1| DNA-binding protein [Mycobacterium avium 104] Length = 474 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 26/102 (25%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L + P Sbjct: 61 ATFFSSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHP 102 >gi|190410646|ref|YP_001965216.1| hypothetical protein pFRL1.10c [Streptomyces sp. FR1] gi|84872661|gb|ABC67398.1| hypothetical protein pFRL1.10c [Streptomyces sp. FR1] Length = 759 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 9/92 (9%), Positives = 21/92 (22%), Gaps = 2/92 (2%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 R+ E L+ + +A+ + + E R P + ++L Sbjct: 30 KRLREAAGLSQAQIAKALDARREAVGNWETGKTE--PRPPKRAAYARLLEGLAARFPAPA 87 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 L + + Sbjct: 88 TNTDGSYVLPPTPTFAEHLEMEARAKADPRPF 119 >gi|85373888|ref|YP_457950.1| transcriptional regulator [Erythrobacter litoralis HTCC2594] gi|84786971|gb|ABC63153.1| probable transcriptional regulator [Erythrobacter litoralis HTCC2594] Length = 459 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 19/42 (45%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 A+ R+ +R +T + +A++ G+ + +R R Sbjct: 9 GAALRRLRKREGVTQAEMAQRLGISASYLTLMERNQRPVSAR 50 >gi|25026941|ref|NP_736995.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259508572|ref|ZP_05751472.1| DNA-binding protein [Corynebacterium efficiens YS-314] gi|23492221|dbj|BAC17195.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259163839|gb|EEW48393.1| DNA-binding protein [Corynebacterium efficiens YS-314] Length = 474 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/128 (9%), Positives = 30/128 (23%), Gaps = 5/128 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ + LA GL + N+ + R + + +I A Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEAFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + + + V + Sbjct: 61 ATFFSRDDDSRLLAEVQDVMLDREINPSSIELQELSEMVYNHPQLARAMVEMHRRYRNVR 120 Query: 129 GIYAIQTQ 136 +I Sbjct: 121 DKLSIAVD 128 >gi|300694265|ref|YP_003750238.1| DNA-binding transcriptional regulator [Ralstonia solanacearum PSI07] gi|299076302|emb|CBJ35614.1| DNA-binding transcriptional regulator [Ralstonia solanacearum PSI07] Length = 88 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 19/44 (43%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + +++ + ++ L+ + LA + G+ + + +R Sbjct: 7 RTPEQLPAILKGFRKQAGLSQAELAARMGMRQQTLSALERNAEN 50 >gi|302540835|ref|ZP_07293177.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302458453|gb|EFL21546.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 195 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 50/182 (27%), Gaps = 28/182 (15%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + R R L+ + +AR+AG+ ++ ++ + PS E+++ + Sbjct: 19 DSIAAVLRRERGRAGLSLTEVARRAGVAKSTLSQLESGNGN-----PSLETLWALCVTL- 72 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + + + + + P Sbjct: 73 -----DVPPSRLLDPPRPRVQVIRADEGVTLASAQADYQAAMLSAS--------PPGA-- 117 Query: 127 HNGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQV---NCGDRLLIKPRTGD 179 IY + + + D M + + A + GD + Sbjct: 118 RRDIYRLSAEPGAVRASDPHMPGVVEHVLLASGRARVGLAAEPVELRPGDYVAYPGDLPH 177 Query: 180 IV 181 + Sbjct: 178 LF 179 >gi|218848124|ref|YP_002454675.1| HTH-type transcriptional regulator SinR [Bacillus cereus G9842] gi|218546255|gb|ACK98648.1| HTH-type transcriptional regulator SinR [Bacillus cereus G9842] Length = 60 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + T S LA K+G+ + + + G + PS +SI I +A + Sbjct: 1 MHKVKEKRLNKGWTQSKLAEKSGVPQPTISHIEN----GTLKNPSIKSIKNIASALGINL 56 Query: 70 CQ 71 + Sbjct: 57 EE 58 >gi|218290643|ref|ZP_03494734.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239308|gb|EED06506.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 106 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 7/105 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++T + LAR G+ + +R R P+ + I +A + + Sbjct: 5 GRRLRAFRKLKHMTQADLARALGVSLATIGGIERGT-----RQPTAHLVSAIASALSVDV 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 +L + D P Sbjct: 60 EELCGPT--WPGDGWDRGAAEEAADSRAGHGHATVDGPHSPLDQG 102 >gi|229815042|ref|ZP_04445379.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM 13280] gi|229809272|gb|EEP45037.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM 13280] Length = 276 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 30/83 (36%), Gaps = 5/83 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I + ++ + LA + + + +R P +S+ + A ++ Sbjct: 5 EQIKLGRKELGMSQADLADAIWVSRNTVSNWERGDTT-----PDIQSLVLMGALFGLSLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLL 93 +++ +++K L+ Sbjct: 60 EMVKGDEQVMAQALERDKNHLLI 82 >gi|190889651|ref|YP_001976193.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190694930|gb|ACE89015.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 125 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EA+ R+ R ++ +A + P + + G+ P+ + + + Sbjct: 1 MTPF-----GEAVRRLRARKGVSQKEMAAALNVSPAYLSALE----HGKRGLPTFDLLQR 51 Query: 61 ILAATNETICQ 71 I N + Sbjct: 52 IAGYFNIIWDE 62 >gi|163757965|ref|ZP_02165053.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] gi|162284254|gb|EDQ34537.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] Length = 231 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I + +T + +A G + + +R PS ++I K A Sbjct: 165 KEIGAKLKAARLEAGVTQAVVAEAMGTKENAIRRLERGE-----HSPSIDTIRKYAEAIG 219 Query: 67 ET 68 Sbjct: 220 YD 221 >gi|162455990|ref|YP_001618357.1| hypothetical protein sce7708 [Sorangium cellulosum 'So ce 56'] gi|161166572|emb|CAN97877.1| hypothetical protein sce7708 [Sorangium cellulosum 'So ce 56'] Length = 205 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 6/49 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + E+ L+ + L K GL +S + R P ++ + K Sbjct: 140 LKVLREKLGLSQAELGEKLGLARSSVANYENG------RSPLSQRLRKW 182 >gi|154495860|ref|ZP_02034556.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] gi|150275058|gb|EDN02106.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] Length = 253 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ + ++ NLT LA + + + +K +R P + Sbjct: 1 MNDIDKERFGGFLLQLRREKNLTQKELAERLFVSDKAVSKWERGLS-----LPDVGLLLP 55 Query: 61 ILAATNETICQ 71 + T+ + Sbjct: 56 MADCLGVTVTE 66 >gi|15678686|ref|NP_275801.1| epoxidase [Methanothermobacter thermautotrophicus str. Delta H] gi|2621742|gb|AAB85164.1| epoxidase [Methanothermobacter thermautotrophicus str. Delta H] Length = 190 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 14/173 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + E I ++ + N+T LA ++G++ K + I PS + KI Sbjct: 3 ENTVGERIKQLRDNQNITVDELAERSGVNAELIKKIEEGDII-----PSLTPLIKISRTL 57 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP---TGNKWNTVG-VP 121 + LLD D +K K +++F + F G + Sbjct: 58 GVRLGTLLDDRVQDEPVIVRKGKTQRVIHFSGYEEKTDTSNLSFHSLGAGKGDRHMEPFI 117 Query: 122 EIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 H + + + ++ + + + + D +L+ + + Sbjct: 118 IDVELHTDDFKLSSHEGEEFIYVLEGE--IEVIYGQDRYLLSEGDSIYYDSVV 168 >gi|21221314|ref|NP_627093.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|7635971|emb|CAB88806.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 280 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + +++ + R+ ER LT + G+ + ++ + EG +WP+ +++ + Sbjct: 5 PTTRRRQLGADLRRLRERKGLTLEEAGSRVGISKATLSRYE--TKEGTVKWPAVDALCR 61 >gi|14591505|ref|NP_143586.1| hypothetical protein PH1748 [Pyrococcus horikoshii OT3] gi|3258179|dbj|BAA30862.1| 192aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 192 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 1/127 (0%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + +T LARKAG+ K + ++ R + + +L I Sbjct: 13 IKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNR-ILRALLECQKTRITAK 71 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + + E + + IY+ Sbjct: 72 NIMSSPIISVSSEDKIEKVVRLMEKYNISQVPVMEKDKIVGAITERLLVRKSLEDEDIYS 131 Query: 133 IQTQDTR 139 + +D Sbjct: 132 KKAKDIM 138 >gi|99081574|ref|YP_613728.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037854|gb|ABF64466.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 133 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + + E +T LAR+ G+ ++ ++ E R ST S Sbjct: 17 GDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLS 64 >gi|326390746|ref|ZP_08212299.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993140|gb|EGD51579.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 160 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 5/93 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ LT LA G+ + + R P + + KI N + Sbjct: 2 LGKRIKELRKKKGLTQKDLALYLGVSDRAVGYYENEQ-----RTPPPDILQKIADFFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + LL + ++ Sbjct: 57 VDYLLGRTDNPSEIKNFSKEISKNPIINQPQEW 89 >gi|323693104|ref|ZP_08107323.1| hypothetical protein HMPREF9475_02186 [Clostridium symbiosum WAL-14673] gi|323502858|gb|EGB18701.1| hypothetical protein HMPREF9475_02186 [Clostridium symbiosum WAL-14673] Length = 225 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ E I L+ L ++ G++ ++ + + G++ + R + + L T Sbjct: 10 KQVGERIRERRTELKLSMPELGKRLGVNKSTIQRYEADGVDPK-RTMIIDGLAHALLTTP 68 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 E + L + + T + + E + + + + Sbjct: 69 EWLTGLSEDKEYNSYTVCQMDLEKHVKDYLEALTVSVKGEPH 110 >gi|295094077|emb|CBK83168.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 189 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KK + + + LT LA + G+ S ++ + P + ++ Sbjct: 1 MDQKKSGSFLRELRKEKQLTQEQLAERFGVTSRSVSRWETGSN-----MPDLSILVELAD 55 Query: 64 ATNETICQ 71 + I Sbjct: 56 FYDVDIRD 63 >gi|240169857|ref|ZP_04748516.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 138 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA ++G+ ++ +R R PS + + +I A Sbjct: 20 DIGSFIRTQRETAQVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLAQIAKALRV 74 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + L + + ++ + + ++ Sbjct: 75 SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYAA 118 >gi|228993734|ref|ZP_04153639.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] gi|228765945|gb|EEM14594.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] Length = 77 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 21/75 (28%), Gaps = 5/75 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + + LA + G+ + + PS F+ Sbjct: 1 MAMNQRGSLVNNLIVLRAEKRWSQTELANRVGVSRQTIASIEANRYN-----PSLILAFE 55 Query: 61 ILAATNETICQLLDL 75 I + ++ Sbjct: 56 IAHVLGKEFHEVFQY 70 >gi|220903711|ref|YP_002479023.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868010|gb|ACL48345.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 215 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + L+ LA + G+D ++ + +R + PS S+ I A T +L Sbjct: 145 LRTLRVEAGLSQEQLAAQCGMDRSAISLLERQKNQ-----PSLASLVLISEALGMTAAEL 199 Query: 73 LDLPFSDGRT 82 + +D Sbjct: 200 IGRVEADIPQ 209 >gi|182434275|ref|YP_001821994.1| hypothetical protein SGR_482 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462791|dbj|BAG17311.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 518 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + E + + ER T + LAR+ G+ ++ ++ P E + ++ A Sbjct: 31 LAERLSALRERSGRTYASLARRIGVSGSTLHRYCTGRTVPAEFAP-VERLARLCGAP 86 >gi|145219417|ref|YP_001130126.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205581|gb|ABP36624.1| putative transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 78 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R + LA KAGL T +R R + + KI+ A N Sbjct: 2 LGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGE-----RNITLLNYAKIVDALNLA 56 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 + L+ E ++ Sbjct: 57 MHDLMKASVYPPPPPEANIQK 77 >gi|91790855|ref|YP_551806.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91700735|gb|ABE46908.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 166 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 6/68 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H+ + + + L+ LA AGL + N + GR S + Sbjct: 1 MPIL-HE-LAANVKKKRSEMGLSQERLAELAGLSRATINALE----AGRLDNLSLTRAER 54 Query: 61 ILAATNET 68 + Sbjct: 55 LANILGYG 62 >gi|116493825|ref|YP_805559.1| Signal peptidase I [Lactobacillus casei ATCC 334] gi|116103975|gb|ABJ69117.1| Signal peptidase I [Lactobacillus casei ATCC 334] Length = 199 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 18/94 (19%) Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSI-----D 194 Q TSM P GD L + D ++I R G + K +I G ++ Sbjct: 39 VQGTSMQPTLENGDRLYSIRVKKPKRNDIVVINAPDRPGSLYIKRVIGMPGDTVSSKDNQ 98 Query: 195 LMSLNCC-----YPVDTVEMSDIEWIARILWASQ 223 L S+N Y +I WASQ Sbjct: 99 L-SVNGKKIAEPYLNKKFATDEINK-----WASQ 126 >gi|332669413|ref|YP_004452421.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338451|gb|AEE45034.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484] Length = 176 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 +I +++ L+ S LA + GL +K + G + R Sbjct: 10 RIAQSLRDRRVELGLSQSELAERLGLTQAYLSKLETAGATTQLRRL 55 >gi|313672769|ref|YP_004050880.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939525|gb|ADR18717.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 200 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 9/160 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I R+ NLT +A G ++ + + P ++ KI N Sbjct: 7 NIGERIKRLRHMRNLTLQDVANFTGFSKALISQIENNVVT-----PPITTLAKIAKVLNV 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-GSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + K+ + + Y + + + + + + V P Sbjct: 62 KMVYFFEDDLDFKEYYLVKKNDRKIAYREGAKHGYIYEELAHIKNNDIFESFVVTIRSEP 121 Query: 127 HN-GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 +++ + + + + + +Y D++ L + Sbjct: 122 REKKLFSHEGYEFMYILEG--GIRMYLNNDVVTLEEGDSI 159 >gi|317056742|ref|YP_004105209.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449011|gb|ADU22575.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 146 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 15/46 (32%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 I + + L+ LA K + + ++ + S+ Sbjct: 7 IRELRVKRGLSQEELAEKVYVTRQAVSRWENGDTVPNTETLKLLSV 52 >gi|295133833|ref|YP_003584509.1| PbsX family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294981848|gb|ADF52313.1| PbsX family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 64 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + N+T + LA + + + N ++ + PS FKI N I Sbjct: 3 NRIKVLRAEKNITQAELANRVEVSRQTINAIEKGKFD-----PSLPLAFKIARLFNLKIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DIFQDEE 64 >gi|291530129|emb|CBK95714.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] gi|291556915|emb|CBL34032.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 219 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I LT +A G+ + + + +P S+ K+ Sbjct: 4 DIGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKS-----YPDIISVIKMSDCYEV 58 Query: 68 T 68 + Sbjct: 59 S 59 >gi|282162049|gb|ADA79913.1| hypothetical protein CU5_35 [Lactobacillus phage phiPYB5] Length = 64 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 2/56 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + +T A+ G+ ++ + P+ E I K T Sbjct: 5 LKALRANKGMTQEEAAKAIGVSQYTWQNYEHGKT--FPDVPTIEKIEKKFNVTYND 58 >gi|288935523|ref|YP_003439582.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|288890232|gb|ADC58550.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 95 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + ++++ T LAR+ G+ + + + + ++FKIL + Sbjct: 18 QLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENH-----PDKTTLTTLFKILQSLGV 72 Query: 68 TICQLLDLPFSDGRTTEK 85 + + Sbjct: 73 VMTLNAKATETAPAPDNN 90 >gi|259417133|ref|ZP_05741052.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259346039|gb|EEW57853.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 188 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 10/121 (8%) Query: 1 MTSFSHKKIW----EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + I + L+ +A +G+ + ++ +R P+ Sbjct: 1 MTDTT-DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGES-----SPTIA 54 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +++ + A LL+ + R + +++P++ + S G Sbjct: 55 TLWNLTRALQVDFAGLLEASETVDRVDVLRARDVPVIDSKAAQCTIAILSPPEDVGGHEV 114 Query: 117 T 117 Sbjct: 115 Y 115 >gi|239637339|ref|ZP_04678322.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239597071|gb|EEQ79585.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 67 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R + LA+KAG+ + + +R PS + KI N Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAIKIARIFN 53 >gi|206576102|ref|YP_002238537.1| transcriptional regulator HipB [Klebsiella pneumoniae 342] gi|290509561|ref|ZP_06548932.1| DNA-binding transcriptional regulator HipB [Klebsiella sp. 1_1_55] gi|206565160|gb|ACI06936.1| transcriptional regulator HipB [Klebsiella pneumoniae 342] gi|289778955|gb|EFD86952.1| DNA-binding transcriptional regulator HipB [Klebsiella sp. 1_1_55] Length = 88 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + ++++ T LAR+ G+ + + + + ++FKIL + Sbjct: 11 QLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENH-----PDKTTLTTLFKILQSLGV 65 Query: 68 TICQLLDLPFSDGRTTEK 85 + + Sbjct: 66 VMTLNAKATETAPAPDNN 83 >gi|154506035|ref|ZP_02042773.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC 29149] gi|153793534|gb|EDN75954.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC 29149] Length = 122 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S+ ++ E + R+ + H+ T ++ + +++ + R P +S+ ++ Sbjct: 1 MSNIQLVENLYRLRKAHHYTQQEISDLLNISRQAYSNYE-----TSKRTPDLDSLMRLAD 55 Query: 64 ATNETICQLLDLPF 77 ++ QL++ P Sbjct: 56 IYGVSLDQLVNHPC 69 >gi|108761990|ref|YP_629050.1| DEAD/DEAH family helicase [Myxococcus xanthus DK 1622] gi|108465870|gb|ABF91055.1| helicase, DEAD/DEAH family [Myxococcus xanthus DK 1622] Length = 1280 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 33/150 (22%), Gaps = 12/150 (8%) Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L + + PL + + + + + P Sbjct: 1010 AGMPGTAFRVRFTLGPDGWSAAPVQAEPSPLAPWGTLVAFPSLRAAAGAVEHPISIDQAP 1069 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM---LPLYRKGDILILNSAIQV---NCGDRLLIKP 175 E + SM R GD L++ A R+ + Sbjct: 1070 EAARVRLPSRVQGEGLFAVRASGDSMDGGAHPIRDGDWLVMRDAKAAGAGRLDGRVALVQ 1129 Query: 176 RTGDIV-----AKVLISRRGRSIDLMSLNC 200 I K L+ + L S N Sbjct: 1130 VPDPITGFRYQVKRLVRQ-DGHWLLRSDNP 1158 >gi|21233393|ref|NP_639310.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770358|ref|YP_245120.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188993556|ref|YP_001905566.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|325920249|ref|ZP_08182199.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923520|ref|ZP_08185169.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923552|ref|ZP_08185196.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|21115231|gb|AAM43192.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575690|gb|AAY51100.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167735316|emb|CAP53530.1| transcriptional regulator [Xanthomonas campestris pv. campestris] gi|325545969|gb|EGD17179.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325545992|gb|EGD17197.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549272|gb|EGD20176.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 66 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E + L + G+ + N + + PS F+I E+I Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 HVFLFED 64 >gi|89894475|ref|YP_517962.1| hypothetical protein DSY1729 [Desulfitobacterium hafniense Y51] gi|89333923|dbj|BAE83518.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I + + + + LA K + S +K + P I ++ Sbjct: 3 LAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAI-----PDINRILELARLFG 55 >gi|50122571|ref|YP_051738.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] gi|49613097|emb|CAG76548.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 184 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ +I R ER NL+ + LA++AGL ++ ++ + PS E+++ + A + Sbjct: 9 RLAVSIRRERERLNLSVTELAKRAGLAKSTLSQLESGIGN-----PSLETLWALAMALDV 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + QL+ P + E Sbjct: 64 QVSQLIGQPRQHVQVIRANEGAATY 88 >gi|325262256|ref|ZP_08128994.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033710|gb|EGB94987.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 197 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 16/39 (41%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 K+ + I + + +T LA + + +K +R Sbjct: 5 KVGKLILTLRQEKGMTQKALADAMNISDRTISKWERGVG 43 >gi|332655107|ref|ZP_08420848.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332515967|gb|EGJ45576.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 316 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +K I + LT LA+ + P + +K +R +P + + Sbjct: 12 QKTGALIGQARREKGLTQKELAQALHVSPQAVSKWERGLN-----FPDLALLEALSDQLG 66 Query: 67 ETICQ 71 T+ + Sbjct: 67 LTVSE 71 >gi|225419983|ref|ZP_03762286.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] gi|225041375|gb|EEG51621.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] Length = 151 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 6/96 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I I ++ +++ LA+++G ++ NK + + I I A Sbjct: 15 EIGNRIKQLRTEKDMSQDELAKRSGYGSRSTINKIELGIND-----VPQSKIKAIAEALG 69 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 ++ LL D K ++ L G Sbjct: 70 VSVGTLLCWDEFDESHNTIKIQKEINLIEQIEQQHG 105 >gi|184155136|ref|YP_001843476.1| hypothetical protein LAF_0660 [Lactobacillus fermentum IFO 3956] gi|183226480|dbj|BAG26996.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956] Length = 104 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I ++ + +++ LA+ + ++ + R P+ E + K+ Sbjct: 2 NIGERIAQLRKSRSMSQFQLAKTLNIATSTLGMYE-----TNKRKPNMEMLEKLADFFGV 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|148378345|ref|YP_001252886.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|168184831|ref|ZP_02619495.1| DNA-binding protein [Clostridium botulinum Bf] gi|237793662|ref|YP_002861214.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148287829|emb|CAL81895.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|182672129|gb|EDT84090.1| DNA-binding protein [Clostridium botulinum Bf] gi|229261583|gb|ACQ52616.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 181 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 8/152 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E I + + NLT L+ K GL + ++ + + S+ KI A N Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSS-----SLAITSLKKIADALN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I P +K+E+E + S S SG F + + V Sbjct: 58 VPITYFFKSPELHKFLVKKQERE--VFELEGSSSKFIRLSGNFTERAMESILVVIPAEKQ 115 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 H ++ ++ + + +++ D + Sbjct: 116 HGHKFSHPGEEFIYVLEG-AIIANIDGEDYFV 146 >gi|219668902|ref|YP_002459337.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539162|gb|ACL20901.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I + + + + LA K + S +K + P I ++ Sbjct: 3 LAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAI-----PDINRILELARLFG 55 >gi|333003174|gb|EGK22722.1| helix-turn-helix family protein [Shigella flexneri K-272] gi|333017008|gb|EGK36330.1| helix-turn-helix family protein [Shigella flexneri K-227] Length = 102 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + LT + +A + G T+ + + G + PS ++ K AT Sbjct: 44 AARKEAGLTQAEVAERMGTKATAITRMESNLASGVS-GPSFATLKKFARATG 94 >gi|325845348|ref|ZP_08168648.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325488602|gb|EGC91011.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 194 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 14/175 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ + L+ LA K + + +K + P TE + ++ N + Sbjct: 6 LGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAI-----PDTEHVVRLAEVFNVS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I LL T + K + + F G F + V +I + Sbjct: 61 IDSLLRGDLKCQPTNQGKCLPVLIGMMVIGLVVSFMMWGTFKSFMLVTIGWVIQIVTIIL 120 Query: 129 GIYAIQ----TQDTRHKTQDTSMLPLYR-----KGDILILNSAIQVNCGDRLLIK 174 I + + K ++P + ++ A ++ Sbjct: 121 FIVIHEKPTYKEIYWIKVSSVWLIPPFIVKYLVDQLMIFYPKARPAIFDLIVVSM 175 >gi|229490457|ref|ZP_04384298.1| transcriptional regulator, Cro/CI family [Rhodococcus erythropolis SK121] gi|229322747|gb|EEN88527.1| transcriptional regulator, Cro/CI family [Rhodococcus erythropolis SK121] Length = 190 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + A+ R R L+ S +AR+A + ++ ++ + PS E+++ + A Sbjct: 13 QKLVAVALKRERTRAGLSLSEVARRADIAKSTLSQLESGLGN-----PSLETLWALGNAL 67 Query: 66 NETICQ 71 Q Sbjct: 68 GVPFSQ 73 >gi|237794998|ref|YP_002862550.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] gi|229264088|gb|ACQ55121.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] Length = 141 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I ++ E LT LA K + ++ + G R +++ K+ + Sbjct: 2 LGDKIKQLRENKKLTQHELANKLNIAQSTIGMIE-----GNKRPAGRKTLIKLADFFGVS 56 >gi|226329569|ref|ZP_03805087.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] gi|225202755|gb|EEG85109.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] Length = 161 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 38/144 (26%), Gaps = 3/144 (2%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +++ + + ++ + NL+ + L+RK+G+ + +K + R + E+I I Sbjct: 6 PKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSN--PRIDTLEAIA-I 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 K F G + P Sbjct: 63 ALGFPLGDLFSFTREEYPRLERHKPIVGDYAQEFKFRIGIGNITEIWHIEMKHGAIINSP 122 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDT 145 + + + + Sbjct: 123 AHADGTQEHIMVYSGKLMMRFDND 146 >gi|182435435|ref|YP_001823154.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463951|dbj|BAG18471.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 468 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R+ E ++ + LAR + P+ N+ + R + + ++ A Sbjct: 7 GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDA-----RPLTVPVLLRLTEAFGVDP 61 >gi|99082865|ref|YP_615019.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99039145|gb|ABF65757.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 188 Score = 44.4 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 10/121 (8%) Query: 1 MTSFSHKKIW----EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT + I + L+ +A +G+ + ++ +R P+ Sbjct: 1 MTDTT-DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGES-----SPTIA 54 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +++ + A LL+ + R + +++P++ + S G Sbjct: 55 TLWNLTRALQVDFAGLLEAGEAADRIDVLRARDVPVIDSKAAHCTIAILSPPEDVGGHEV 114 Query: 117 T 117 Sbjct: 115 Y 115 >gi|327405730|ref|YP_004346568.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321238|gb|AEA45730.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 298 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S K I + I ++ ++ + L+ + + P + K +R P ++ ++ Sbjct: 1 MLSTKIIGQRIADARKKTTISQAQLSERLFISPQAVGKWERGES-----MPDIITLNRLS 55 Query: 63 AAT 65 Sbjct: 56 EIL 58 >gi|331699234|ref|YP_004335473.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953923|gb|AEA27620.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 196 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 41/136 (30%), Gaps = 9/136 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + +LT + L+R G+ ++ ++ + R + E + I A Sbjct: 14 RVGPRLAELRRERDLTLAALSRTTGISTSTLSRLESGH-----RRATLELLLPIARAYGV 68 Query: 68 TICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + L+ S + + + +P + G + Sbjct: 69 GLDDLVGAEPSVPDPRVRGLEPIRTGSAVAYPLTRGPVQPRPYRLVYGPGLECTEL-RTH 127 Query: 125 SPHNGIYAIQTQDTRH 140 +Y + + T Sbjct: 128 EGFEWVYVLSGRLTLL 143 >gi|314934990|ref|ZP_07842349.1| signal peptidase I [Staphylococcus caprae C87] gi|313652920|gb|EFS16683.1| signal peptidase I [Staphylococcus caprae C87] Length = 191 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 SM P + D ++++ + +N GD ++ D K LI + G +++ Sbjct: 31 TVSGESMHPTFEDRDRVMVSRISKTLNHINSGDVVIFHATKKDDYIKRLIGKPGDTVE 88 >gi|238852875|ref|ZP_04643280.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] gi|238834569|gb|EEQ26801.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] Length = 335 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 54/188 (28%), Gaps = 14/188 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + +++NL+ GLA K + + +K + P E I + Sbjct: 2 RLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSI-----PDIEKIVNLSELFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE---- 122 T LL + + L + + + + + Sbjct: 57 TTDYLLKSGEPSFEFKNEDINDKDKLPVLSDELVRKYLTASRKNAKFRALAIALIIFGLA 116 Query: 123 -IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 I Y++ T+ K + + ++ I + G + + Sbjct: 117 CICFTRALRYSLDTKYFLEK-YGDRLTSIVSTIGYILFIITIAIAVGLFVYSIMNVRE-- 173 Query: 182 AKVLISRR 189 K L + Sbjct: 174 FKQLKKQN 181 >gi|240144766|ref|ZP_04743367.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203287|gb|EEV01572.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 94 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + ++ NLT LA + G+ ++ + + R P+ +++ K + Sbjct: 2 NLGEKLKQLRLEKNLTQKQLADRLGVAISAISSYESDT-----RCPTFDTLIKYARIFHV 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|210634337|ref|ZP_03298073.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM 13279] gi|210158864|gb|EEA89835.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM 13279] Length = 68 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 4/43 (9%), Positives = 15/43 (34%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + ++ + L+ + LA G+ + + + + Sbjct: 7 LKNSLRAARKERGLSQAQLAEMTGVSRNTISSIETGQFNPTAK 49 >gi|187921632|ref|YP_001890664.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187720070|gb|ACD21293.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 212 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ +T L+R AG+ + ++ +R P+ +++ A Sbjct: 34 RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L + EIP L + + G + + Sbjct: 89 SLDSLFAPQKTPEAIAVSGPHEIPTLSGHDAKYQLRVWGPIELAGK-FEWYEL 140 >gi|160895181|ref|ZP_02075954.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] gi|156863215|gb|EDO56646.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] Length = 101 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I E I + E +T S LA + ++ N K + PS +++ Sbjct: 1 MVM----DISERIRELREVIGITQSNLASALNISRSAVNAWKMGTSK-----PSIDTLVD 51 Query: 61 ILAATNET 68 + + + Sbjct: 52 LADFFHVS 59 >gi|149919009|ref|ZP_01907494.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149820162|gb|EDM79581.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 125 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 5/79 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + LT LA ++GL S + PS ++ K+ + Sbjct: 13 RFGRHIRALRSERGLTQELLAERSGLSADSVRSLENGKF-----SPSRGTLRKLCTGLDL 67 Query: 68 TICQLLDLPFSDGRTTEKK 86 + L + GR E + Sbjct: 68 QMSTFFLLYETGGRRGEHE 86 >gi|118476368|ref|YP_893519.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118415593|gb|ABK84012.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 75 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N + S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41 >gi|158320084|ref|YP_001512591.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140283|gb|ABW18595.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 115 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 5/88 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + E L+ LA+ + ++ + + R P E I KI N T Sbjct: 2 LGDKIKLLREDRGLSQLELAKILEVGNSTLSMYESNT-----RKPDYEVIKKIADYFNVT 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 LL L + + E Sbjct: 57 TDYLLGLTEVPNQQYHDQILEDYPEIIS 84 >gi|16973422|gb|AAL32284.1|AF118548_4 hypothetical protein [Brucella abortus] Length = 650 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R+ +R LT GLA + + + + + P E+++ + A Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWSLANALGI 60 Query: 68 TICQ 71 + Sbjct: 61 EFGE 64 >gi|49183677|ref|YP_026929.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49480249|ref|YP_034942.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49177604|gb|AAT52980.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49331805|gb|AAT62451.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 75 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N + S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41 >gi|9632445|ref|NP_049417.1| putative cro-like regulatory protein [Streptococcus phage DT1] gi|4530165|gb|AAD21905.1| putative cro-like regulatory protein [Streptococcus phage DT1] Length = 67 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + RH+LT A+ G P + + ++ + + ++ KI + L Sbjct: 10 IKELRARHDLTQEEFAKSVGTTPQTVSAWEKNVLSISPK-----NMAKICNKYHIHSSDL 64 Query: 73 L 73 Sbjct: 65 Y 65 >gi|58040192|ref|YP_192156.1| hypothetical protein GOX1761 [Gluconobacter oxydans 621H] gi|58002606|gb|AAW61500.1| Hypothetical protein GOX1761 [Gluconobacter oxydans 621H] Length = 203 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 ++ I + E L+ LA K G+ ++ + Sbjct: 82 ELGRRIRLLREMAGLSQQQLADKVGISRSAVAFWETGRS 120 >gi|52144624|ref|YP_082203.1| transcriptional regulator [Bacillus cereus E33L] gi|51978093|gb|AAU19643.1| transcriptional regulator [Bacillus cereus E33L] Length = 75 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N + S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41 >gi|42779831|ref|NP_977078.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42735748|gb|AAS39686.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 75 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N + S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41 >gi|99082554|ref|YP_614708.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038834|gb|ABF65446.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 204 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 42/137 (30%), Gaps = 6/137 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + AI + ++ LT L+ ++G+ ++ +R PS ++ +I AA Sbjct: 8 TEPNVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNAT-----PSLGTLAQISAA 62 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + T + + L + + + +P Sbjct: 63 LDVGLDYFISASKPSDGLTRSGSRPLFALDDSSLRYEALGADFPGSEMSAYI-LHIPPGY 121 Query: 125 SPHNGIYAIQTQDTRHK 141 + + + Sbjct: 122 VSETVHHEGEEIIFILE 138 >gi|47568815|ref|ZP_00239509.1| transcriptional regulator, Cro/CI family-related protein [Bacillus cereus G9241] gi|222094439|ref|YP_002528498.1| DNA-binding protein [Bacillus cereus Q1] gi|47554491|gb|EAL12848.1| transcriptional regulator, Cro/CI family-related protein [Bacillus cereus G9241] gi|221238496|gb|ACM11206.1| DNA-binding protein [Bacillus cereus Q1] Length = 75 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N + S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41 >gi|332982308|ref|YP_004463749.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332699986|gb|AEE96927.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 126 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 ++E + + + +T LA G+ ++ + + R P ++I ++ N + Sbjct: 2 LYERLVELRKERKMTQEELANVLGISRSALSLYETD-----KRQPDFQTICRLADFFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + LL K F Sbjct: 57 VDYLLGRTDDRCGVARTTYKAGNKADFI 84 >gi|329890393|ref|ZP_08268736.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845694|gb|EGF95258.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 476 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + R+ +L+ + +A G+ P+ N +R R S + + ++ Sbjct: 11 LGGRLKRLRRELDLSQTAMAADLGVSPSYLNHIERNQ-----RPVSAQLLLRLAE 60 >gi|306825023|ref|ZP_07458366.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432850|gb|EFM35823.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 74 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA G+ + + PS E KI Sbjct: 1 MTKESKIITNLKSVRESTGMTQQELADLIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|319762972|ref|YP_004126909.1| hypothetical protein Alide_2286 [Alicycliphilus denitrificans BC] gi|330825052|ref|YP_004388355.1| XRE family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117533|gb|ADV00022.1| Protein of unknown function DUF2083,transcriptional regulator [Alicycliphilus denitrificans BC] gi|329310424|gb|AEB84839.1| transcriptional regulator, XRE family [Alicycliphilus denitrificans K601] Length = 478 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 5/99 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E+ LT + LA+ + P+ N+ + R + + ++ AA + Q Sbjct: 5 LKTLREQRGLTQAALAQALKVSPSYLNQIENNQ-----RPLTVNVLLRLQAAFGIDLQQF 59 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + + + + P Sbjct: 60 SEDSQARQLGQLRSALADMPGGDQVPLAETRILAEQLPA 98 >gi|296269505|ref|YP_003652137.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092292|gb|ADG88244.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 411 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 41/133 (30%), Gaps = 4/133 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + +R ++ LA + G + ++ +R I Sbjct: 1 MTDLEGLTFGARVKELRQRRGMSQKELAAEVGRSESWVSQVERDVQPVE----RLSVIQA 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + A ++ L S +++ ++ L + +G + + V Sbjct: 57 LANALGVSVQVLRPEASSSAPGSQQTVEKNDLDGLRMALTGHPALPVLIEAEEPAQVIDV 116 Query: 121 PEIRSPHNGIYAI 133 + + +A+ Sbjct: 117 DALSHGVDRAWAL 129 >gi|228950524|ref|ZP_04112674.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809160|gb|EEM55631.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 114 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + +LT + LA L + + + P E++ I + N + Sbjct: 5 GQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQ-----PDIETLASIASFFNVS 58 >gi|229164709|ref|ZP_04292573.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] gi|228618789|gb|EEK75751.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] Length = 421 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 29/216 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ LT LA + + ++ ++ I+ PS E + + N + Sbjct: 2 LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQ-----PSYEVLEALSNKLNCS 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + D+ + + + + + V + N P++ Sbjct: 56 VEDFFDVVEN---KELTLSQIKKDIKAAENHTTANLWDKVKNFIEQKNYFNHPDVNKYDE 112 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRL---LIKPRTGDIVA 182 GI + I + G+ + + + + Sbjct: 113 GILN--------WIHGKYYEH-IHDFNHAIPYFTKSISLLKEGNYVNELVRSLDSLGYL- 162 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L +LN Y + I I R+ Sbjct: 163 --YSRINNHETALSTLNRAYKIII--HEQISGILRV 194 >gi|228475756|ref|ZP_04060474.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|314935413|ref|ZP_07842766.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] gi|228270538|gb|EEK11973.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|313656748|gb|EFS20487.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] Length = 67 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R + LA+KAG+ + + +R PS + KI N Sbjct: 3 NRLKELRAREGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAIKIARIFN 53 >gi|206975303|ref|ZP_03236217.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] gi|206746724|gb|EDZ58117.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] Length = 421 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 29/216 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ LT LA + + ++ ++ I+ PS E + + N + Sbjct: 2 LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQ-----PSYEVLEALSNKLNCS 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + D+ + + + + + V + N P++ Sbjct: 56 VEDFFDVVEN---KELTLSQIKKDIKAAENHTTANLWDKVKNFIEQKNYFNHPDVNKYDE 112 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRL---LIKPRTGDIVA 182 GI + I + G+ + + + + Sbjct: 113 GILN--------WIHGKYYEH-IHDFNHAIPYFTKSISLLKEGNYVNELVRSLDSLGYL- 162 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L +LN Y + I I R+ Sbjct: 163 --YSRINNHETALSTLNRAYKIII--HEQISGILRV 194 >gi|154501006|ref|ZP_02039044.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] gi|150270030|gb|EDM97549.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] Length = 297 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 6/85 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + +T LA K + + +K +R P + + A ++ L Sbjct: 10 IRDLRKEKGMTQKELADKLHITDRAVSKWERGLC-----APEISLLEPLAEALGCSVLDL 64 Query: 73 LDLPFS-DGRTTEKKEKEIPLLYFP 96 + + ++++ + +L++ Sbjct: 65 MAGERTAKAADSQEEARTRDVLHYS 89 >gi|44004506|ref|NP_982174.1| helix-turn-helix/TPR domain-containing protein [Bacillus cereus ATCC 10987] gi|190015190|ref|YP_001966786.1| putative transcriptional regulator [Bacillus cereus] gi|190015455|ref|YP_001967110.1| putative transcriptional regulator [Bacillus cereus] gi|218848240|ref|YP_002455177.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|229113469|ref|ZP_04242919.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296506587|ref|YP_003667821.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] gi|42741572|gb|AAS45017.1| helix-turn-helix/TPR domain protein [Bacillus cereus ATCC 10987] gi|116584866|gb|ABK00981.1| putative transcriptional regulator [Bacillus cereus] gi|116585136|gb|ABK01245.1| putative transcriptional regulator [Bacillus cereus] gi|218540291|gb|ACK92687.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|228669987|gb|EEL25380.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296327174|gb|ADH10101.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] Length = 421 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 29/216 (13%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ LT LA + + ++ ++ I+ PS E + + N + Sbjct: 2 LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQ-----PSYEVLEALSNKLNCS 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + D+ + + + + + V + N P++ Sbjct: 56 VEDFFDVVEN---KELTLSQIKKDIKAAENHTTANLWDKVKNFIEQKNYFNHPDVNKYDE 112 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRL---LIKPRTGDIVA 182 GI + I + G+ + + + + Sbjct: 113 GILN--------WIHGKYYEH-IHDFNHAIPYFTKSISLLKEGNYVNELVRSLDSLGYL- 162 Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 L +LN Y + I I R+ Sbjct: 163 --YSRINNHETALSTLNRAYKIII--HEQISGILRV 194 >gi|116629447|ref|YP_814619.1| Signal peptidase I [Lactobacillus gasseri ATCC 33323] gi|116095029|gb|ABJ60181.1| Signal peptidase I [Lactobacillus gasseri ATCC 33323] Length = 216 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186 + + SM P + D +I ++ GD +++ G + K +I Sbjct: 31 FFVLNKFVFANLTVSGISMQPTFENNDRVIALRHAKIKQGDIVIVDAPDEPGALYIKRVI 90 Query: 187 SRRGRSID 194 G ++ Sbjct: 91 GLPGDTVV 98 >gi|329116487|ref|ZP_08245204.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906892|gb|EGE53806.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 121 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 6/112 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ I ++ E N+ LA G ++ +K + P+ + K+ A N Sbjct: 9 EVGRRIKQLRESRNIEQLELAELMGYKSQSTISKWESGTN-----LPNGGKLVKLAKALN 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 T +L + + K P G F + + Sbjct: 64 TTTDNILFGSEIERKEETIDLKNTPAKRVAFDGRVFDESDMDFMNSMMESYL 115 >gi|325478584|gb|EGC81696.1| signal peptidase I [Anaerococcus prevotii ACS-065-V-Col13] Length = 193 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 23/119 (19%) Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN----SAIQVNCG 168 + W+ V + I+ K SML GDIL+++ G Sbjct: 16 DVWDWVKTIAVAL-IITIFIKMFIVDATKVSGNSMLNTLHNGDILLVDKIGSRFRGYERG 74 Query: 169 DRLLIK--PRTGDIVAKVLISRRGRSIDLM----------------SLNCCYPVDTVEM 209 D +++K + K +I +G +I L+ S+N YP + Sbjct: 75 DIVILKAPDDPKKLYVKRVIGEKGDTIKLVDGDVYVNDEKITENYTSINETYPTRELSE 133 >gi|300702662|ref|YP_003744262.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299070323|emb|CBJ41615.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 209 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA + G+ + + +R P+ + K+ A Sbjct: 17 NERIARRVRELRATRGYTLDALAARCGVSRSMISLIERGAA-----SPTAAVLDKLAAGL 71 Query: 66 NET 68 + Sbjct: 72 GVS 74 >gi|282853817|ref|ZP_06263154.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] gi|282583270|gb|EFB88650.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] Length = 508 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + I ++H +T + LA ++ ++ + S E I + Sbjct: 1 MDNITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 I A I + R + + + Sbjct: 56 ITEALESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 104 >gi|257055461|ref|YP_003133293.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017] gi|256585333|gb|ACU96466.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017] Length = 291 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 5/123 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 AI R+ + ++ L+++ G + + R PS E + +L Sbjct: 23 AAIRRLLDASGMSGRELSQRLGFSHGTVSHWVTG-----RRLPSPEDMASLLTLLGIKGE 77 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + L E + + P +G +W+ VP + + Sbjct: 78 EKQRLIDLARHAAEPNWLVVGMSGIPQQLAGAIESERHASAMVEWSRDIVPGLLQTADYA 137 Query: 131 YAI 133 A+ Sbjct: 138 RAL 140 >gi|225571153|ref|ZP_03780151.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] gi|225159984|gb|EEG72603.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] Length = 134 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +KI + + LT LA KA + + ++ + I PS + + + Sbjct: 25 EEKIGFRVKQARLNAGLTQEELAEKANMSSSFISRLENGKI-----LPSIKKLLMLADIM 79 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 N + LL F E Sbjct: 80 NVGLEDLLRDFFRHTGEPSDALTEQIFYQVDMM 112 >gi|153814674|ref|ZP_01967342.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC 27756] gi|317501120|ref|ZP_07959326.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium 8_1_57FAA] gi|331090138|ref|ZP_08339026.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848168|gb|EDK25086.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC 27756] gi|316897507|gb|EFV19572.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium 8_1_57FAA] gi|330402084|gb|EGG81656.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium 3_1_46FAA] Length = 124 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S+ ++ + R+ + H+ T + ++K + +++ + R P + I +I Sbjct: 1 MSNIQLAANLQRLRKDHHFTQTQFSKKLNISRQAYSNYETG-----KRIPDLDIIIRIAN 55 Query: 64 ATNET 68 + + Sbjct: 56 IYHIS 60 >gi|87199050|ref|YP_496307.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134731|gb|ABD25473.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 464 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 5/129 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ LT +A + G+ P+ +R R + + + ++ A Sbjct: 8 LGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQ-----RPLTADLLLRLARAYKLD 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L D P+ + D G + + Sbjct: 63 MADLAADERDDYARRLSDALRDPIFSDIDLPALEVADVAASFPGVTEAMLRLYGAWQREQ 122 Query: 129 GIYAIQTQD 137 A Q Sbjct: 123 QALAEQRNA 131 >gi|76818409|ref|YP_336666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126445514|ref|YP_001061010.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126456620|ref|YP_001074047.1| DNA-binding cupin domain-containing protein [Burkholderia pseudomallei 1106a] gi|167721896|ref|ZP_02405132.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167847952|ref|ZP_02473460.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|237508050|ref|ZP_04520765.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242312736|ref|ZP_04811753.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254185569|ref|ZP_04892156.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254192180|ref|ZP_04898678.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254264681|ref|ZP_04955546.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] gi|76582882|gb|ABA52356.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126225005|gb|ABN88510.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126230388|gb|ABN93801.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a] gi|157987660|gb|EDO95427.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|184209803|gb|EDU06846.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|235000255|gb|EEP49679.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242135975|gb|EES22378.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254215683|gb|EET05068.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] Length = 202 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 21 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +L P + +IP L + + G + + Sbjct: 76 LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130 >gi|134296885|ref|YP_001120620.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140042|gb|ABO55785.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 230 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 6/171 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + KI AA + Sbjct: 35 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ + ++ S P +++ + + + + Sbjct: 90 VAAFLRRHAVNGFEHLAAERAVRVVSSNGRFSARALYPEGEPAAAEFHELRIAPLHTEPG 149 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 A + ++ L+ V D+ GD Sbjct: 150 TPRA-PGTTINLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199 >gi|332976057|gb|EGK12927.1| DNA-binding protein [Desmospora sp. 8437] Length = 184 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 5/100 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I++ I R+ T L+ + GL + ++ +R + S+ KI A Sbjct: 7 EEIYQEIKRLRLEQGYTLKVLSERTGLSVSFLSQVERGSS-----SLAITSLKKIADALG 61 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 I + + F+ + +E++ L + Sbjct: 62 VPITRFFEAEFNHNYLLKAEEQKPFRLEGSSAVYTRLNGE 101 >gi|323164377|gb|EFZ50182.1| HTH-type transcriptional regulator hipB [Shigella sonnei 53G] Length = 87 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 S ++ A+ + +++ T S LA+K G+ + + + Sbjct: 8 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 47 >gi|312863201|ref|ZP_07723439.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100737|gb|EFQ58942.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 161 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/133 (9%), Positives = 37/133 (27%), Gaps = 7/133 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA----- 64 + ++ + L+ + LA+ + + + ++ + + E + K Sbjct: 1 MNNLKKLRQSIGLSQNELAKIFNVSEKTILRWEKGLTDIK--STKAEQLAKYFEVSVPYL 58 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + D K + + + + E+ Sbjct: 59 LGFSNYKNKFEVEIDNENGILDNKFLERIIEVVGEESIPIIEKNYIEDSNSPEPDYSELA 118 Query: 125 SPHNGIYAIQTQD 137 S N + ++Q D Sbjct: 119 SLRNAVVSLQNTD 131 >gi|331673039|ref|ZP_08373816.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli TA280] gi|331069818|gb|EGI41196.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli TA280] Length = 94 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 S ++ A+ + +++ T S LA+K G+ + + + Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 54 >gi|301166893|emb|CBW26471.1| putative helix-turn-helix DNA-binding protein [Bacteriovorax marinus SJ] Length = 189 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + N T L+ +G+ T+ + PS +I K+ A N + Sbjct: 17 ISHNIKFLRAKRNYTQKQLSEVSGIPRTTLTNIESGEGN-----PSLSNIIKLAKALNVS 71 >gi|300927366|ref|ZP_07143088.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 182-1] gi|301326076|ref|ZP_07219476.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 78-1] gi|300416689|gb|EFJ99999.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 182-1] gi|300847195|gb|EFK74955.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 78-1] Length = 98 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 S ++ A+ + +++ T S LA+K G+ + + + Sbjct: 19 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 58 >gi|284030112|ref|YP_003380043.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809405|gb|ADB31244.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 198 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 41/134 (30%), Gaps = 5/134 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + R + +T +GLA G+ ++ ++ + R ++ A Sbjct: 16 EQAGPRLKRFRVQRGITLAGLAAATGISKSTLSRLETGRR--RPTLELLLALSLAFRAPL 73 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + ++ R + K ++ G V P GN + Sbjct: 74 DDLVGAPEVGDPRIRLKPGRVKGRTVIPLTRQPDGMQVWKIVVPAGNV---IPETRAHDG 130 Query: 127 HNGIYAIQTQDTRH 140 H IY + Sbjct: 131 HEWIYVLSGHLRLV 144 >gi|259417621|ref|ZP_05741540.1| conserved domain protein [Silicibacter sp. TrichCH4B] gi|259346527|gb|EEW58341.1| conserved domain protein [Silicibacter sp. TrichCH4B] Length = 77 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 5/41 (12%), Positives = 17/41 (41%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 ++ I + + + + LA++ + + N +R + Sbjct: 13 RMKNNIQELRQIAGWSQAELAKRLNVSRQTVNALERGRYDP 53 >gi|256545793|ref|ZP_05473149.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] gi|256398489|gb|EEU12110.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] Length = 144 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + NL+ LA+ GL S + I PS E+ +KI ++ Sbjct: 81 EIENRIREFRKEKNLSQHKLAKLVGLKRRSIMAYENNTI-----SPSLETAYKICKVLDK 135 Query: 68 TICQLLDLP 76 I ++ Sbjct: 136 DIKEVFIFK 144 >gi|256114435|ref|ZP_05455150.1| hypothetical protein Bmelb3E_16432 [Brucella melitensis bv. 3 str. Ether] Length = 650 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R+ +R LT GLA + + + + + P E+++ + A Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWSLANALGI 60 Query: 68 TICQ 71 + Sbjct: 61 EFGE 64 >gi|254819802|ref|ZP_05224803.1| transcriptional regulator, XRE family protein [Mycobacterium intracellulare ATCC 13950] Length = 138 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA K+G+ ++ +R R PS + + +I A Sbjct: 21 DIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERG-----LRKPSADVLNQIAKALRV 75 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L T + + ++ + Sbjct: 76 SAEVLYVRAGILEPTDKSQVRDAIVTDTA 104 >gi|255103138|ref|ZP_05332115.1| XRE family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255308330|ref|ZP_05352501.1| XRE family transcriptional regulator [Clostridium difficile ATCC 43255] Length = 121 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + ++T LA GL P + ++ R+P + I K+ N + Sbjct: 2 IGYRIKELRKEKDITQKELATFLGLTPKMISFYEK-----EERFPPHDIILKLSDFFNVS 56 >gi|260587216|ref|ZP_05853129.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|283798210|ref|ZP_06347363.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|260542411|gb|EEX22980.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|291074079|gb|EFE11443.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 86 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + L+ S LA AG++ + K ++ + ST + +I A + + Sbjct: 12 EKLQKLRQAAGLSQSQLAEAAGVNVRMYQKYEQGDRDISKAQLST--LLRICKALSCKLS 69 Query: 71 QLLDLPF 77 ++ Sbjct: 70 DIVTDAE 76 >gi|194015772|ref|ZP_03054388.1| immunity repressor protein [Bacillus pumilus ATCC 7061] gi|194013176|gb|EDW22742.1| immunity repressor protein [Bacillus pumilus ATCC 7061] Length = 139 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 4/120 (3%) Query: 16 MAERHN-LTPSGLARKAGLDPTSFNKSKRFG--IEGRNRWPSTESIFKILAATNETICQL 72 + + L+ A++ G+ T K + G+ P+ E++ I A +L Sbjct: 8 LIKARGKLSQREAAKRIGISHTYLGKIENGKDPRTGKEIKPTPETLKLISKAYQCDYEEL 67 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFP-PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + + L + G+F + + E ++ Sbjct: 68 MIKAGYIDESETSNSESPKLTQYQRKIYEWAKSHDGLFFDSKPEDVEELIEEFEVVYELF 127 >gi|167755905|ref|ZP_02428032.1| hypothetical protein CLORAM_01422 [Clostridium ramosum DSM 1402] gi|237734869|ref|ZP_04565350.1| DNA-binding protein [Mollicutes bacterium D7] gi|167704844|gb|EDS19423.1| hypothetical protein CLORAM_01422 [Clostridium ramosum DSM 1402] gi|229382197|gb|EEO32288.1| DNA-binding protein [Coprobacillus sp. D7] Length = 177 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 50/218 (22%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + R+ + + LT LA ++ L ++ +R PS ++ IL A Sbjct: 2 DIGSKVKRLRQANGLTLEELANRSELTKGFLSQLERDLT-----SPSVATLEDILEALGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + ++ F + + S + P K + + Sbjct: 57 NLQEFFSEKE-------AEQLVFKQDDFFENIQDDYKISYIIPNAQKNDMEPILIELEKD 109 Query: 128 NGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 I + Q+ + Q +++ GD + V K Sbjct: 110 KQSMIIAPHEGQEFGYVVQGR-----------------VKLIYGD--------NEFVLKK 144 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G + L L Y + + A+++W S Sbjct: 145 -----GETFYLKGLVSHY---LFNPGETK--AKVIWVS 172 >gi|167462648|ref|ZP_02327737.1| putative prophage repressor [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382850|ref|ZP_08056686.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153179|gb|EFX45633.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 164 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 10/103 (9%), Positives = 28/103 (27%), Gaps = 14/103 (13%) Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDR 170 G +W + + + + SM+ D+ ++ + Sbjct: 58 GERWEDIELTDD------------NYFYILIKKDSMIGDAIMPDDLALIKEEHNEDYFGL 105 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213 + + + + SI L N +P + ++ Sbjct: 106 SAGIVDNEECTIRRIYKK-DDSIVLYPSNPTFPPRIFKGQELN 147 >gi|157156109|ref|YP_001462795.1| DNA-binding transcriptional regulator HipB [Escherichia coli E24377A] gi|194425802|ref|ZP_03058358.1| transcriptional regulator HipB [Escherichia coli B171] gi|293409856|ref|ZP_06653432.1| DNA-binding transcriptional regulator HipB [Escherichia coli B354] gi|293445912|ref|ZP_06662334.1| DNA-binding transcriptional regulator HipB [Escherichia coli B088] gi|300895880|ref|ZP_07114457.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 198-1] gi|331677392|ref|ZP_08378067.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli H591] gi|332279321|ref|ZP_08391734.1| transcriptional regulator HipB [Shigella sp. D9] gi|157078139|gb|ABV17847.1| transcriptional regulator HipB [Escherichia coli E24377A] gi|194415857|gb|EDX32123.1| transcriptional regulator HipB [Escherichia coli B171] gi|291322742|gb|EFE62170.1| DNA-binding transcriptional regulator HipB [Escherichia coli B088] gi|291470324|gb|EFF12808.1| DNA-binding transcriptional regulator HipB [Escherichia coli B354] gi|300360182|gb|EFJ76052.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 198-1] gi|323176608|gb|EFZ62200.1| HTH-type transcriptional regulator hipB [Escherichia coli 1180] gi|323964144|gb|EGB59630.1| helix-turn-helix protein [Escherichia coli M863] gi|323978317|gb|EGB73403.1| helix-turn-helix protein [Escherichia coli TW10509] gi|327254166|gb|EGE65795.1| HTH-type transcriptional regulator hipB [Escherichia coli STEC_7v] gi|331073852|gb|EGI45172.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli H591] gi|332101673|gb|EGJ05019.1| transcriptional regulator HipB [Shigella sp. D9] Length = 94 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 S ++ A+ + +++ T S LA+K G+ + + + Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 54 >gi|157160982|ref|YP_001458300.1| DNA-binding transcriptional regulator HipB [Escherichia coli HS] gi|188494966|ref|ZP_03002236.1| transcriptional regulator HipB [Escherichia coli 53638] gi|331642092|ref|ZP_08343227.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli H736] gi|157066662|gb|ABV05917.1| transcriptional regulator HipB [Escherichia coli HS] gi|188490165|gb|EDU65268.1| transcriptional regulator HipB [Escherichia coli 53638] gi|315136148|dbj|BAJ43307.1| DNA-binding transcriptional regulator HipB [Escherichia coli DH1] gi|331038890|gb|EGI11110.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli H736] Length = 94 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 S ++ A+ + +++ T S LA+K G+ + + + Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 54 >gi|149373158|ref|ZP_01892027.1| transcriptional regulator, putative [unidentified eubacterium SCB49] gi|149354260|gb|EDM42830.1| transcriptional regulator, putative [unidentified eubacterium SCB49] Length = 68 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + + ++ + LA K + N+ R R PS E ++KI N ++ Sbjct: 1 MNRIKEVLKDKGISQTWLAEKMEKSYPTINEYARN-----KRQPSLEDLYKIADILNVSV 55 Query: 70 CQ 71 Sbjct: 56 SD 57 >gi|114327151|ref|YP_744308.1| MerR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315325|gb|ABI61385.1| transcriptional regulator, MerR family [Granulibacter bethesdensis CGDNIH1] Length = 464 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 5/90 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S I + R+ + + LA + G+ + N + R + + K+ Sbjct: 1 MSRPLIGRTVRRLRQERGESQQSLAVRLGISASYLNLIEHDQ-----RGVTASLLIKLAE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + L +T ++ P+L Sbjct: 56 TLRVDLRALSGQQERHLQTGLREVFADPML 85 >gi|74312125|ref|YP_310544.1| DNA-binding transcriptional regulator HipB [Shigella sonnei Ss046] gi|73855602|gb|AAZ88309.1| persistence to inhibition of murein or DNA biosynthesis [Shigella sonnei Ss046] Length = 88 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 S ++ A+ + +++ T S LA+K G+ + + + Sbjct: 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 48 >gi|89896146|ref|YP_519633.1| hypothetical protein DSY3400 [Desulfitobacterium hafniense Y51] gi|219670564|ref|YP_002460999.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335594|dbj|BAE85189.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540824|gb|ACL22563.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 98 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I + L+ + L +G+ T + + + P +I K+L Sbjct: 28 KIVSQIVEARKEKGLSQTELEAISGIKQTHIARLENNRND-----PQLTTILKLLYPLGM 82 Query: 68 T 68 T Sbjct: 83 T 83 >gi|191164989|ref|ZP_03026833.1| transcriptional regulator HipB [Escherichia coli B7A] gi|193064250|ref|ZP_03045333.1| transcriptional regulator HipB [Escherichia coli E22] gi|193066936|ref|ZP_03047905.1| transcriptional regulator HipB [Escherichia coli E110019] gi|209918790|ref|YP_002292874.1| DNA-binding transcriptional regulator HipB [Escherichia coli SE11] gi|218554043|ref|YP_002386956.1| DNA-binding transcriptional regulator HipB [Escherichia coli IAI1] gi|218695047|ref|YP_002402714.1| DNA-binding transcriptional regulator HipB [Escherichia coli 55989] gi|218704993|ref|YP_002412512.1| DNA-binding transcriptional regulator HipB [Escherichia coli UMN026] gi|256018271|ref|ZP_05432136.1| DNA-binding transcriptional regulator HipB [Shigella sp. D9] gi|260843814|ref|YP_003221592.1| DNA-binding transcriptional regulator HipB [Escherichia coli O103:H2 str. 12009] gi|260855228|ref|YP_003229119.1| DNA-binding transcriptional regulator HipB [Escherichia coli O26:H11 str. 11368] gi|260867950|ref|YP_003234352.1| DNA-binding transcriptional regulator HipB [Escherichia coli O111:H- str. 11128] gi|291282612|ref|YP_003499430.1| transcriptional regulator HipB [Escherichia coli O55:H7 str. CB9615] gi|293404997|ref|ZP_06648989.1| DNA-binding transcriptional regulator HipB [Escherichia coli FVEC1412] gi|298380643|ref|ZP_06990242.1| DNA-binding transcriptional regulator HipB [Escherichia coli FVEC1302] gi|300819520|ref|ZP_07099715.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 107-1] gi|300823493|ref|ZP_07103622.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 119-7] gi|300903828|ref|ZP_07121734.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 84-1] gi|301304868|ref|ZP_07210973.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 124-1] gi|307310954|ref|ZP_07590600.1| transcriptional regulator, XRE family [Escherichia coli W] gi|309796770|ref|ZP_07691174.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 145-7] gi|331667908|ref|ZP_08368765.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli TA271] gi|331682979|ref|ZP_08383587.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli H299] gi|190904761|gb|EDV64466.1| transcriptional regulator HipB [Escherichia coli B7A] gi|192929098|gb|EDV82709.1| transcriptional regulator HipB [Escherichia coli E22] gi|192959526|gb|EDV89960.1| transcriptional regulator HipB [Escherichia coli E110019] gi|209912049|dbj|BAG77123.1| transcriptional repressor [Escherichia coli SE11] gi|218351779|emb|CAU97495.1| DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218360811|emb|CAQ98378.1| DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218432090|emb|CAR12978.1| DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|257753877|dbj|BAI25379.1| DNA-binding transcriptional regulator HipB [Escherichia coli O26:H11 str. 11368] gi|257758961|dbj|BAI30458.1| DNA-binding transcriptional regulator HipB [Escherichia coli O103:H2 str. 12009] gi|257764306|dbj|BAI35801.1| DNA-binding transcriptional regulator HipB [Escherichia coli O111:H- str. 11128] gi|290762485|gb|ADD56446.1| transcriptional regulator HipB [Escherichia coli O55:H7 str. CB9615] gi|291427205|gb|EFF00232.1| DNA-binding transcriptional regulator HipB [Escherichia coli FVEC1412] gi|298278085|gb|EFI19599.1| DNA-binding transcriptional regulator HipB [Escherichia coli FVEC1302] gi|300404157|gb|EFJ87695.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 84-1] gi|300523963|gb|EFK45032.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 119-7] gi|300527927|gb|EFK48989.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 107-1] gi|300839892|gb|EFK67652.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 124-1] gi|306909132|gb|EFN39628.1| transcriptional regulator, XRE family [Escherichia coli W] gi|308119652|gb|EFO56914.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 145-7] gi|315060784|gb|ADT75111.1| DNA-binding transcriptional regulator [Escherichia coli W] gi|315253931|gb|EFU33899.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 85-1] gi|320201790|gb|EFW76366.1| HipB protein [Escherichia coli EC4100B] gi|320636943|gb|EFX06808.1| antitoxin HipB [Escherichia coli O157:H7 str. G5101] gi|320642298|gb|EFX11591.1| antitoxin HipB [Escherichia coli O157:H- str. 493-89] gi|320647650|gb|EFX16407.1| antitoxin HipB [Escherichia coli O157:H- str. H 2687] gi|320653282|gb|EFX21421.1| antitoxin HipB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658891|gb|EFX26521.1| antitoxin HipB [Escherichia coli O55:H7 str. USDA 5905] gi|320663725|gb|EFX30957.1| antitoxin HipB [Escherichia coli O157:H7 str. LSU-61] gi|323156597|gb|EFZ42742.1| HTH-type transcriptional regulator hipB [Escherichia coli EPECa14] gi|323185981|gb|EFZ71338.1| HTH-type transcriptional regulator hipB [Escherichia coli 1357] gi|323378649|gb|ADX50917.1| helix-turn-helix domain protein [Escherichia coli KO11] gi|323947903|gb|EGB43899.1| helix-turn-helix protein [Escherichia coli H120] gi|324020293|gb|EGB89512.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 117-3] gi|324119293|gb|EGC13180.1| helix-turn-helix protein [Escherichia coli E1167] gi|331064872|gb|EGI36774.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli TA271] gi|331079800|gb|EGI50990.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli H299] Length = 88 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 S ++ A+ + +++ T S LA+K G+ + + + Sbjct: 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 48 >gi|16129467|ref|NP_416025.1| antitoxin of HipAB toxin-antitoxin system [Escherichia coli str. K-12 substr. MG1655] gi|89108350|ref|AP_002130.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|170020162|ref|YP_001725116.1| DNA-binding transcriptional regulator HipB [Escherichia coli ATCC 8739] gi|170081176|ref|YP_001730496.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|194436483|ref|ZP_03068584.1| transcriptional regulator HipB [Escherichia coli 101-1] gi|238900728|ref|YP_002926524.1| DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253773522|ref|YP_003036353.1| DNA-binding transcriptional regulator HipB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161566|ref|YP_003044674.1| DNA-binding transcriptional regulator HipB [Escherichia coli B str. REL606] gi|256022812|ref|ZP_05436677.1| DNA-binding transcriptional regulator HipB [Escherichia sp. 4_1_40B] gi|297516085|ref|ZP_06934471.1| DNA-binding transcriptional regulator HipB [Escherichia coli OP50] gi|300917815|ref|ZP_07134458.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] gi|300929036|ref|ZP_07144532.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 187-1] gi|300950984|ref|ZP_07164859.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 116-1] gi|300958993|ref|ZP_07171092.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 175-1] gi|301021631|ref|ZP_07185624.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 196-1] gi|301644694|ref|ZP_07244675.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 146-1] gi|307138159|ref|ZP_07497515.1| DNA-binding transcriptional regulator HipB [Escherichia coli H736] gi|123131|sp|P23873|HIPB_ECOLI RecName: Full=HTH-type transcriptional regulator hipB gi|222143086|pdb|3DNV|B Chain B, Mdt Protein gi|222143089|pdb|3DNW|B Chain B, Structure Of Mdt Protein gi|254839184|pdb|2WIU|B Chain B, Mercury-Modified Bacterial Persistence Regulator Hipba gi|254839186|pdb|2WIU|D Chain D, Mercury-Modified Bacterial Persistence Regulator Hipba gi|254839585|pdb|3HZI|B Chain B, Structure Of Mdt Protein gi|146353|gb|AAA56877.1| hipB [Escherichia coli] gi|1742468|dbj|BAA15180.1| DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|1787786|gb|AAC74581.1| antitoxin of HipAB toxin-antitoxin system [Escherichia coli str. K-12 substr. MG1655] gi|169755090|gb|ACA77789.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169889011|gb|ACB02718.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|194424515|gb|EDX40501.1| transcriptional regulator HipB [Escherichia coli 101-1] gi|238860950|gb|ACR62948.1| DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242377258|emb|CAQ31997.1| hipB, subunit of HipB dimer and HipB transcriptional repressor complex [Escherichia coli BL21(DE3)] gi|253324566|gb|ACT29168.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973467|gb|ACT39138.1| DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977678|gb|ACT43348.1| DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|260449370|gb|ACX39792.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|299881522|gb|EFI89733.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 196-1] gi|300314396|gb|EFJ64180.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 175-1] gi|300414966|gb|EFJ98276.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] gi|300449742|gb|EFK13362.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 116-1] gi|300462996|gb|EFK26489.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 187-1] gi|301076978|gb|EFK91784.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 146-1] gi|309701770|emb|CBJ01082.1| putative HipB DNA-binding transcriptional regulator [Escherichia coli ETEC H10407] gi|315619518|gb|EFV00045.1| HTH-type transcriptional regulator hipB [Escherichia coli 3431] gi|323937336|gb|EGB33614.1| helix-turn-helix protein [Escherichia coli E1520] gi|323942054|gb|EGB38231.1| helix-turn-helix protein [Escherichia coli E482] gi|323962280|gb|EGB57869.1| helix-turn-helix protein [Escherichia coli H489] gi|323973743|gb|EGB68918.1| helix-turn-helix protein [Escherichia coli TA007] gi|332343189|gb|AEE56523.1| transcriptional regulator protein HipB [Escherichia coli UMNK88] Length = 88 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 S ++ A+ + +++ T S LA+K G+ + + + Sbjct: 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 48 >gi|325288703|ref|YP_004264884.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|325290739|ref|YP_004266920.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|325291076|ref|YP_004267257.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|325291248|ref|YP_004267429.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964104|gb|ADY54883.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966140|gb|ADY56919.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966477|gb|ADY57256.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966649|gb|ADY57428.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 144 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K+ E I N + L R G+ + ++ R P T S++KI Sbjct: 1 MIEIEKVGERIAARLAELNQIQADLCRATGMSNNAISQYVTG-----KRTPDTLSLYKIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ ++ +L GR E+ + Sbjct: 56 SSLGVSMEWILTGENKQGRVNTTNERAGLME 86 >gi|313906487|ref|ZP_07839821.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313468677|gb|EFR64045.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 101 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + + +T LA K G+ + + + P+ ES+ KI A Sbjct: 35 EIREMVIELRHDNQMTQKELAVKCGITQANISNLENGTTR-----PTIESLKKIADALGM 89 >gi|298244517|ref|ZP_06968323.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297551998|gb|EFH85863.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 313 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 8/132 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ E + + +A + G D T+ ++ +R + E + + N Sbjct: 5 HRLRQVRELRGWSQAKVAEQIGTDATTVSRWERGLFSPTPYF--REKLCALFDQ-NAEEL 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 LL+ P + G +P + I Sbjct: 62 GLLESSRRLCEEGCGDLPLQPPGILSSPHAHGER-----SREEICEEEAIPPVVPSCTYI 116 Query: 131 YAIQTQDTRHKT 142 I+ Sbjct: 117 VHIRPDHRTLGI 128 >gi|291616809|ref|YP_003519551.1| YdcN [Pantoea ananatis LMG 20103] gi|291151839|gb|ADD76423.1| YdcN [Pantoea ananatis LMG 20103] gi|327393235|dbj|BAK10657.1| transcriptional regulator YdcN [Pantoea ananatis AJ13355] Length = 187 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 33/123 (26%), Gaps = 6/123 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58 + +++ + + + + L+ G+ + ++ +R + ++ Sbjct: 6 TEQRLAARLAELRMKQGWSLDELSTATGISRPTLSRIERAETSPTAALLNRLCVAYSLTM 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++L+ L+ E + P G G + Sbjct: 66 SRLLSEVEAESDLLIPRERQPIWNDEASGFSRRNVSPPAHNFRCELIEGTLRPGARVEYD 125 Query: 119 GVP 121 P Sbjct: 126 APP 128 >gi|259046980|ref|ZP_05737381.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259036423|gb|EEW37678.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 69 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + + E +T LA K G+ + + PS E KI Sbjct: 3 KILTNLKAIREDSRMTQQELADKIGVRRETILHLENNRYN-----PSLEMALKIARVFGM 57 Query: 68 TICQLLDLPF 77 ++ + L Sbjct: 58 SVEDIFRLNE 67 >gi|194015481|ref|ZP_03054097.1| YvaO [Bacillus pumilus ATCC 7061] gi|194012885|gb|EDW22451.1| YvaO [Bacillus pumilus ATCC 7061] Length = 134 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 2/124 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + E ++ + LA +G+ ++ + G + + + + L E + Sbjct: 5 GEQLRILRENRKMSVNQLAMYSGVSAAGISRIENGKR-GVPKPLTIKKLAHALKVPYEDL 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + K + E L + + +F G+ W + +I + Sbjct: 64 MLLAGHIEQEQVHEMKPKYESMLKIYQTALQKDVEHLPIFD-GDLWERLSAQDISQLNEY 122 Query: 130 IYAI 133 + Sbjct: 123 FLTL 126 >gi|172041518|ref|YP_001801232.1| HTH family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852822|emb|CAQ05798.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium urealyticum DSM 7109] Length = 514 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/125 (8%), Positives = 33/125 (26%), Gaps = 5/125 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + +++ + LA GL + N+ + R + + KI A Sbjct: 35 VGSRLRQLRKERDISQAQLATTLGLSASYVNQIEHDQ-----RPLTLAVLQKITRAFGVD 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + ++ P + V + + Sbjct: 90 ATFFANEDSLRLLAEVQDVMADRDIWPTPVDVTELAELVRHHPAIARAMVDMHSRYRNVS 149 Query: 129 GIYAI 133 + Sbjct: 150 DKLTL 154 >gi|169351502|ref|ZP_02868440.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM 1552] gi|169291724|gb|EDS73857.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM 1552] Length = 73 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + + N++ LA + GL + +R R S +SI KI Sbjct: 10 RFGQRVKELRLKQNISQEELAFRCGLSKNYISDVERGT-----RNISLKSIEKIADGLAI 64 Query: 68 TICQLLDLP 76 I +L + Sbjct: 65 RIKELFEFK 73 >gi|168185803|ref|ZP_02620438.1| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169296146|gb|EDS78279.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 221 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 11/214 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL----- 62 ++ I + N+T LARK G+ + + + E I K+L Sbjct: 3 RVGSKIRDARLKANVTEKQLARKIGVAEKFIKEVESG--KKVINESVMEKISKVLGKDLN 60 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 T ++ + + K EK + + +P Sbjct: 61 DVTMSFEAEVYEEEKVQTKKNNKLEKINDIWDDALGSVLKPVPVYGYDMARIIEMRKLPI 120 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 I + G + + K +D M+ KGDI ++ L++ + Sbjct: 121 INNKVEGH--AKDKVLYLKVEDDDMVGSRIAKGDIAFGYITHEIINNSLCLVEYN-DERH 177 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 + + + L+S +TV + DI+ + Sbjct: 178 IRQIKRLDSNKLLLISNGNSLRTETVTVRDIKVL 211 >gi|161619771|ref|YP_001593658.1| hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365] gi|163845428|ref|YP_001623083.1| hypothetical protein BSUIS_B1330 [Brucella suis ATCC 23445] gi|254703616|ref|ZP_05165444.1| hypothetical protein Bsuib36_06776 [Brucella suis bv. 3 str. 686] gi|260568922|ref|ZP_05839390.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|161336582|gb|ABX62887.1| Hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365] gi|163676151|gb|ABY40261.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|260154306|gb|EEW89388.1| transcriptional regulator [Brucella suis bv. 4 str. 40] Length = 650 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R+ +R LT GLA + + + + + P E+++ + A Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWSLANALGI 60 Query: 68 TICQ 71 + Sbjct: 61 EFGE 64 >gi|124267559|ref|YP_001021563.1| XRE family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124260334|gb|ABM95328.1| transcriptional regulator, XRE family [Methylibium petroleiphilum PM1] Length = 107 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ E + + + LT LA AGL + + + + PS E + + A Sbjct: 4 RLGEKLRELRKERKLTLEKLADAAGLSKSYLWELENRESQ----RPSAEKLTALADALG 58 >gi|302334962|ref|YP_003800169.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318802|gb|ADK67289.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 198 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + + LT LA + + + + + +P ES+ + Sbjct: 2 EIGQRMRALRQGAGLTQDELAERLYVSRQTISNWETGKS-----YPDVESVSLACDLFDV 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|299768500|ref|YP_003730526.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] gi|298698588|gb|ADI89153.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] Length = 183 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 17/142 (11%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H + I + + +L+ LA +AG+ + + + S + I A Sbjct: 8 LQH--VGTNIRSLRDERDLSQQDLADQAGVSRRTIAALETGQVN-----ISLAKLDAIAA 60 Query: 64 ATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++ P + EK+E L PS S + G + Sbjct: 61 VLGVDFRTIVSAPEHKEQALVNALAWQGEKEESRATFLASVPSRSQVELWTWSLAVGESY 120 Query: 116 NTVGVPEIRSPHNGIYAIQTQD 137 PE IY ++ + Sbjct: 121 VAEADPEGW--QELIYVLEGEL 140 >gi|296268292|ref|YP_003650924.1| helix-turn-helix domain-containing protein [Thermobispora bispora DSM 43833] gi|296091079|gb|ADG87031.1| helix-turn-helix domain protein [Thermobispora bispora DSM 43833] Length = 370 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+S ++I E + + L+ LA+K LD T K + +R + + Sbjct: 7 MSSLDWQEIGERVRQARLAKGLSQLQLAQKVDLDRTMITKIEAG-----SRRLDALELAR 61 Query: 61 ILAAT 65 + A Sbjct: 62 LAQAL 66 >gi|296170806|ref|ZP_06852377.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894542|gb|EFG74280.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 47/184 (25%), Gaps = 24/184 (13%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN------ 66 + + + LT LA + GL + +K +R R PS K+ A + Sbjct: 5 LRAVRTQRGLTLEALAERTGLTKSYLSKIER-----RQSTPSIAVALKVAKALDVDVGQL 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + D + +L G G + PE Sbjct: 60 FSDEEAREKIAVDRAPAGADGQRYRVLASSLLGKSMSPFVVRPTEGPADD--PHPE-HGG 116 Query: 127 HNGIYAIQTQDTRHKTQ-------DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 ++ S Y + ++ + L++ G Sbjct: 117 QEFLFVHAGSVELGYGDQTITLGAGDS---AYFDASVAHTIRSVGARPAEVLVVAHEPGG 173 Query: 180 IVAK 183 + Sbjct: 174 RTLR 177 >gi|282162048|gb|ADA79912.1| hypothetical protein CU5_34 [Lactobacillus phage phiPYB5] Length = 114 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%) Query: 1 MTSFS---HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M S +K++ I ++ LA K GL T+ + + +P + Sbjct: 1 MQKLSDLGNKEVMAQNIQHYMNEWGISRKELANKLGLSYTTLSSWLQADS-----YPRID 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTT 83 I K+ + L++ +D R Sbjct: 56 KIEKMANFFQISKADLVERHQNDDRPA 82 >gi|289193031|ref|YP_003458972.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] gi|288939481|gb|ADC70236.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] Length = 165 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + I E+ L+ LA+K + ++ K +R+ +E R Sbjct: 75 PML-REDYGDVIREAREKRGLSIEELAKKLKMKASTLQKFERYELEPNEREIKI 127 >gi|242373319|ref|ZP_04818893.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349029|gb|EES40631.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 179 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + NLT LA + L ++ + PS E+ IL Sbjct: 2 DIGSKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHA-----SPSMETFLSILEVLGT 56 Query: 68 TICQLL 73 + Sbjct: 57 SASDFF 62 >gi|223983457|ref|ZP_03633643.1| hypothetical protein HOLDEFILI_00923 [Holdemania filiformis DSM 12042] gi|223964629|gb|EEF68955.1| hypothetical protein HOLDEFILI_00923 [Holdemania filiformis DSM 12042] Length = 79 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ID + + T LA+ +G+ +F KR +++ + + KIL A + + Sbjct: 8 LKRIDELRAQRGWTYYELAKVSGVSKNTFYNYKRE----PDKYLTLHTCCKILGAFDMSF 63 Query: 70 CQLLD 74 Q D Sbjct: 64 SQFFD 68 >gi|206559307|ref|YP_002230068.1| putative DNA binding protein [Burkholderia cenocepacia J2315] gi|198035345|emb|CAR51220.1| putative DNA binding protein [Burkholderia cenocepacia J2315] Length = 229 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 6/171 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + KI AA + Sbjct: 35 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ ++ S P Sbjct: 90 VAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPA-AAEFHELRIAPLHTEP 148 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 G + ++ L+ V D+ GD Sbjct: 149 GARRAPGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199 >gi|113971535|ref|YP_735328.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|113886219|gb|ABI40271.1| transcriptional regulator, XRE family [Shewanella sp. MR-4] Length = 78 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ L+ LAR++G+D T + +R R + +S+ ++ A T + Sbjct: 11 LRQLRNEAGLSQEQLARQSGIDRTYISGVER-----SIRNITLDSLEGLIGALGVTSEEF 65 Query: 73 LDLPFSDGRTTEK 85 + + Sbjct: 66 IRRLHDELIKHRP 78 >gi|62290714|ref|YP_222507.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|189024928|ref|YP_001935696.1| Cro/CI family transcriptional regulator [Brucella abortus S19] gi|225853293|ref|YP_002733526.1| hypothetical protein BMEA_A1902 [Brucella melitensis ATCC 23457] gi|254690004|ref|ZP_05153258.1| hypothetical protein Babob68_07506 [Brucella abortus bv. 6 str. 870] gi|254694495|ref|ZP_05156323.1| hypothetical protein Babob3T_07514 [Brucella abortus bv. 3 str. Tulya] gi|254698155|ref|ZP_05159983.1| hypothetical protein Babob28_10710 [Brucella abortus bv. 2 str. 86/8/59] gi|254700494|ref|ZP_05162322.1| hypothetical protein Bsuib55_06531 [Brucella suis bv. 5 str. 513] gi|254708298|ref|ZP_05170126.1| hypothetical protein BpinM_15413 [Brucella pinnipedialis M163/99/10] gi|254708850|ref|ZP_05170661.1| hypothetical protein BpinB_01038 [Brucella pinnipedialis B2/94] gi|254714691|ref|ZP_05176502.1| hypothetical protein BcetM6_15404 [Brucella ceti M644/93/1] gi|254717589|ref|ZP_05179400.1| hypothetical protein BcetM_14533 [Brucella ceti M13/05/1] gi|254731038|ref|ZP_05189616.1| hypothetical protein Babob42_07546 [Brucella abortus bv. 4 str. 292] gi|256030376|ref|ZP_05443990.1| hypothetical protein BpinM2_06958 [Brucella pinnipedialis M292/94/1] gi|256045452|ref|ZP_05448343.1| hypothetical protein Bmelb1R_13219 [Brucella melitensis bv. 1 str. Rev.1] gi|256061874|ref|ZP_05452007.1| hypothetical protein Bneo5_16155 [Brucella neotomae 5K33] gi|256160551|ref|ZP_05458237.1| hypothetical protein BcetM4_16231 [Brucella ceti M490/95/1] gi|256255754|ref|ZP_05461290.1| hypothetical protein BcetB_16060 [Brucella ceti B1/94] gi|256258259|ref|ZP_05463795.1| hypothetical protein Babob9C_13113 [Brucella abortus bv. 9 str. C68] gi|256263214|ref|ZP_05465746.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] gi|260547047|ref|ZP_05822785.1| transcriptional regulator [Brucella abortus NCTC 8038] gi|260755540|ref|ZP_05867888.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260758763|ref|ZP_05871111.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260762597|ref|ZP_05874934.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|261214811|ref|ZP_05929092.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261757497|ref|ZP_06001206.1| transcriptional regulator [Brucella sp. F5/99] gi|297249109|ref|ZP_06932817.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str. B3196] gi|62196846|gb|AAX75146.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1 str. 9-941] gi|189020500|gb|ACD73222.1| transcriptional regulator, Cro/CI family [Brucella abortus S19] gi|225641658|gb|ACO01572.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260095412|gb|EEW79290.1| transcriptional regulator [Brucella abortus NCTC 8038] gi|260669081|gb|EEX56021.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260673023|gb|EEX59844.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675648|gb|EEX62469.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260916418|gb|EEX83279.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261737481|gb|EEY25477.1| transcriptional regulator [Brucella sp. F5/99] gi|263093166|gb|EEZ17272.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] gi|297174242|gb|EFH33599.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str. B3196] Length = 650 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R+ +R LT GLA + + + + + P E+++ + A Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWSLANALGI 60 Query: 68 TICQ 71 + Sbjct: 61 EFGE 64 >gi|58336583|ref|YP_193168.1| transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227903134|ref|ZP_04020939.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] gi|58253900|gb|AAV42137.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227869120|gb|EEJ76541.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] Length = 321 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 55/217 (25%), Gaps = 21/217 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I ++ ++ +L+ LA K + + +K + P E I + Sbjct: 2 KLGQKITQLRKKSHLSQEALAEKMNVSRQAVSKWESNQSI-----PDIEKIVDLSELFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T LL K +E + P S Sbjct: 57 TTDYLLKNGTPSFELPGKTTEEKQIKKLPSIDDQQITQYLEVAKKTAHFE-------SLS 109 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 ++ + T T P + + I + + ++ S Sbjct: 110 IALFFLAIGVFCLFTSFTFFSPNFTGT----IQYTIPIIIIAIAVGYFIHAKLIIHEFES 165 Query: 188 RRGRSIDLMSL-----NCCYPVDTVEMSDIEWIARIL 219 L S N + + + I +L Sbjct: 166 ITQNKFTLTSAQDDFINSSFHEFRKKNNQRIVIGVVL 202 >gi|107023625|ref|YP_621952.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690710|ref|YP_836333.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734053|ref|YP_001766000.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893814|gb|ABF76979.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116648799|gb|ABK09440.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] gi|169817295|gb|ACA91878.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 228 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 6/171 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + KI AA + Sbjct: 35 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ ++ S P Sbjct: 90 VAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPA-AAEFHELRIAPLHTEP 148 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 G + ++ L+ V D+ GD Sbjct: 149 GARRAPGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199 >gi|319651076|ref|ZP_08005210.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2] gi|317397246|gb|EFV77950.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2] Length = 117 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 7/120 (5%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M S+ K + I + ++ LT LA +GL + +R R + +++ Sbjct: 1 MNEMSNILKLVGSNIRELRKQKKLTQEELAELSGLQYSFLAGVERGE-----RNITLQTL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 KI+ ET +L D D K+E I ++ + T Sbjct: 56 EKIIVGLKETPSRLFDFSKLDDNNFSKQEVLISIVNILEKHEDKEVKLFYRMIKDITETY 115 >gi|284034602|ref|YP_003384533.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813895|gb|ADB35734.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 807 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 4/97 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + LT LA ++GL P + + GR ++P ++ + Sbjct: 1 MVPVSTPPFAHLLRHLRTTAGLTQERLAERSGLSPQAIGALE----GGRRQYPRPTTVAQ 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + A + + L + R PP Sbjct: 57 LADALSLSPEDRHRLTTAAHRPKAGDPASAVPRQLPP 93 >gi|262402957|ref|ZP_06079517.1| error-prone repair protein UmuD [Vibrio sp. RC586] gi|262350456|gb|EEY99589.1| error-prone repair protein UmuD [Vibrio sp. RC586] Length = 135 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + K SM + GD+LI++ ++ D ++ G+ V Sbjct: 26 SIDLDGLLIQHPSATFIGKASGDSMQGVGIFDGDLLIVDRHLEAMNHDVIVANFN-GEFV 84 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE 208 K+L RR L+S N + Sbjct: 85 CKILDIRRR---LLLSANEKMQPVAIN 108 >gi|302529249|ref|ZP_07281591.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] gi|302438144|gb|EFL09960.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] Length = 79 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 5/60 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ I + ++ LA G+ + +R PS +I Sbjct: 3 ENVYNRIAVLRAERGISRRQLADALGVHYQTIGYLERGEY-----SPSLYLALRIAEFFE 57 >gi|242372633|ref|ZP_04818207.1| signal peptidase I [Staphylococcus epidermidis M23864:W1] gi|242349688|gb|EES41289.1| signal peptidase I [Staphylococcus epidermidis M23864:W1] Length = 191 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 SM P + D ++++ + +N GD ++ D K LI + G +++ Sbjct: 31 TVSGESMHPTFEDRDKVMVSRISKTLNHINSGDVVIFHATKKDDYIKRLIGKPGDTVE 88 >gi|229018822|ref|ZP_04175669.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] gi|229025063|ref|ZP_04181491.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228736269|gb|EEL86836.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228742443|gb|EEL92596.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] Length = 277 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ + + G S G + Sbjct: 69 FEVSL-DYLLKETAEQSNENVEGYYVSQEMAEGYIVYGQKISKYIALGFSLLILSTIPYL 127 Query: 125 SPHNGIYAIQTQDTRHKTQD 144 Sbjct: 128 LFKENATMSTFLVIIIAVLG 147 >gi|229174292|ref|ZP_04301825.1| Helix-turn-helix domain protein [Bacillus cereus MM3] gi|228609149|gb|EEK66438.1| Helix-turn-helix domain protein [Bacillus cereus MM3] Length = 277 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ + + G S G + Sbjct: 69 FEVSL-DYLLKETAEQSNENVEGYYVSQEMAEGYIVYGQKISKYIALGFSLLILSTIPYL 127 Query: 125 SPHNGIYAIQTQDTRHKTQD 144 Sbjct: 128 LFKENATMSTFLVIIIAVLG 147 >gi|227329661|ref|ZP_03833685.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 188 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ ++I + + + + + A + G+ + +R P+ +++K Sbjct: 1 MSDELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGES-----SPTVATLWK 55 Query: 61 IL 62 I Sbjct: 56 IA 57 >gi|223043379|ref|ZP_03613425.1| signal peptidase I [Staphylococcus capitis SK14] gi|222443168|gb|EEE49267.1| signal peptidase I [Staphylococcus capitis SK14] Length = 191 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 SM P + D ++++ + +N GD ++ D K LI + G +++ Sbjct: 31 TVSGESMHPTFEDRDKVMVSRISKTLNHINSGDVVIFHATKKDDYIKRLIGKPGDTVE 88 >gi|146339002|ref|YP_001204050.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191808|emb|CAL75813.1| putative transcriptional regulator, XRE family [Bradyrhizobium sp. ORS278] Length = 481 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 7/105 (6%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M S KK + R+ ++ L+ + LA G+ P+ N +R R S + + Sbjct: 1 MPGESGKKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQ-----RPVSAQIL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 ++ + + L + PL Sbjct: 56 LRLAEVYDLDLRDLATADEDRFFAELNEIFSDPLFRQIELPKQEL 100 >gi|78043854|ref|YP_360727.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995969|gb|ABB14868.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 107 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 5/97 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ E ++ LA K + + +K + R P + KI +I L Sbjct: 7 IKKLREERKMSRKELADKLQISYWALSKYENNE-----RTPDITLLRKIAQEFGVSIEYL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 L + + + L P + + Sbjct: 62 AGLSDENLLPSTSPVIQKILQLPPEALNEIDLFVDFL 98 >gi|47564376|ref|ZP_00235421.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558528|gb|EAL16851.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 69 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 9/77 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H KI T LA + G+ + ++ PS FK Sbjct: 1 MLLLLHNKIV----VCRAEKGWTQEELATRVGVSRQTIATLEKNKYN-----PSLILAFK 51 Query: 61 ILAATNETICQLLDLPF 77 I +++ + D Sbjct: 52 IANVFEKSLTDVFDYLE 68 >gi|323438808|gb|EGA96546.1| hypothetical protein SAO11_2327 [Staphylococcus aureus O11] gi|323442595|gb|EGB00223.1| hypothetical protein SAO46_1515 [Staphylococcus aureus O46] Length = 63 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + R L + LA+ AG+ + + +R PS + KI NET+ + Sbjct: 2 KELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVETIF 56 Query: 74 DLPF 77 + Sbjct: 57 IIEE 60 >gi|320536871|ref|ZP_08036865.1| helix-turn-helix protein [Treponema phagedenis F0421] gi|320146287|gb|EFW37909.1| helix-turn-helix protein [Treponema phagedenis F0421] Length = 125 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I E R+ L + LA++ +P+ + +R R PS I ++ N Sbjct: 2 ETIGERFKRLRLNLGLNQAELAKRIQANPSLISDIERGE-----REPSKNIIVSLVEIFN 56 Query: 67 ETICQ 71 Sbjct: 57 LNANW 61 >gi|309388333|gb|ADO76213.1| transcriptional regulator, XRE family [Halanaerobium praevalens DSM 2228] Length = 375 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + +HNL+ LA + G T+ + ++ R PS ++I +I N Sbjct: 2 DNFYKRLKNIRNQHNLSQKKLAEELGYARTTISNYEQNI-----RIPSLQTITEIADYFN 56 Query: 67 ET 68 + Sbjct: 57 VS 58 >gi|228934904|ref|ZP_04097735.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824804|gb|EEM70605.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 277 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ + + G S G + Sbjct: 69 FEVSL-DYLLKETAEQSNESVDGYYVSQEMAEGYVAYGQKISKYIALGFSLLILSTIPYL 127 Query: 125 SPHNGIYAIQTQDTRHKTQD 144 Sbjct: 128 LFKENATMSTFLVIIVAVLG 147 >gi|229092601|ref|ZP_04223752.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] gi|228690754|gb|EEL44530.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] Length = 277 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ + + G S G + Sbjct: 69 FEVSL-DYLLKETAEQSNESVDGYYVSQEMAEGYVAYGQKISKYIALGFSLLILSTIPYL 127 Query: 125 SPHNGIYAIQTQDTRHKTQD 144 Sbjct: 128 LFKENATMSTFLVIIVAVLG 147 >gi|167722561|ref|ZP_02405797.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei DM98] gi|167741540|ref|ZP_02414314.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 14] gi|167818734|ref|ZP_02450414.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 91] gi|167827109|ref|ZP_02458580.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 9] gi|167848607|ref|ZP_02474115.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei B7210] gi|167897180|ref|ZP_02484582.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 7894] gi|167905553|ref|ZP_02492758.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei NCTC 13177] Length = 170 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 ++ L+ LA++AG+ + + ++ + PS S+ K+L ++ + Sbjct: 2 KYGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPMSLAEFFTFEID 56 Query: 79 DGRTTEKKEKEIPLL 93 + R+ + E+P L Sbjct: 57 ENRSVVSRRGEMPNL 71 >gi|307710976|ref|ZP_07647399.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|307617216|gb|EFN96393.1| helix-turn-helix family protein [Streptococcus mitis SK321] Length = 68 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 ++ + + R L + LA+ A + + + +R Sbjct: 2 QLKNRLKELRARDGLNQTELAKLAEVSRQTISLLERDEYTP 42 >gi|300787181|ref|YP_003767472.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796695|gb|ADJ47070.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I ++ R R L+ + +AR+AGL ++ ++ + PS E+++ + Sbjct: 25 EIIAASLRRERTRAGLSLTEVARRAGLAKSTLSQLESGTGN-----PSVETLWAL 74 >gi|257869675|ref|ZP_05649328.1| signal peptidase I [Enterococcus gallinarum EG2] gi|257803839|gb|EEV32661.1| signal peptidase I [Enterococcus gallinarum EG2] Length = 182 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 SM R+GD++++ + D ++ + G K +I G SI Sbjct: 36 VPVGGNSMEGTLRQGDMVLIEKISPIKRFDVVVFQMPDGSTYIKRVIGLPGESIR 90 >gi|256848082|ref|ZP_05553526.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] gi|256715142|gb|EEU30119.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] Length = 273 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 8/132 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++KK I + + LT +A + + ++ + R P E+ K+ Sbjct: 1 MNTNKKPRNRIAELRKEKGLTLQQVADAVSVGNNTISRYETG-----KREPKLETWMKLA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + ++ +D ++ + + + ++ TV + Sbjct: 56 NVFDVPVSYIM---GTDNINAIRETRILHNTSLGSLAEMTGISEKRLKSIEQFETVPTVQ 112 Query: 123 IRSPHNGIYAIQ 134 + + Sbjct: 113 EWFLIAEVLCVP 124 >gi|239832573|ref|ZP_04680902.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239824840|gb|EEQ96408.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 182 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|323340979|ref|ZP_08081228.1| UDP-glucose 6-dehydrogenase [Lactobacillus ruminis ATCC 25644] gi|323091641|gb|EFZ34264.1| UDP-glucose 6-dehydrogenase [Lactobacillus ruminis ATCC 25644] Length = 493 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 47/165 (28%), Gaps = 11/165 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + N+T L+ K G++ ++ ++ + P E++ + Sbjct: 1 MKKLSQSLLADIVSTKRKAKNMTQQELSDKVGINRALLSRLEQQ--DFMPSIPQLENLAE 58 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L + ++ + + + V V + Sbjct: 59 VLDFEPSDLFINSEINKMKSPSPLNIAVAGTGYVGLSIATLLAQHNHVTAVDIIPEKVDL 118 Query: 121 ------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 P A + D S Y+ D +++ Sbjct: 119 INNRKSPIQDDYIEKYLAEKDLDLTATLDGAS---AYKDADFVVI 160 >gi|261344094|ref|ZP_05971738.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567684|gb|EFB73219.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++ + L + G+ ++ +R ES+ K A N + Sbjct: 12 IGQRIKSLRLQNGWSGDALGKVTGISQQQISRYERGVNR-----IDVESLAKFANAFNVS 66 >gi|153008774|ref|YP_001369989.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560662|gb|ABS14160.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 182 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|152982646|ref|YP_001354227.1| hypothetical protein mma_2537 [Janthinobacterium sp. Marseille] gi|151282723|gb|ABR91133.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 109 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + A+ ++ E + LA KA L+ + + +R PS ++ K+ +A Sbjct: 28 LGLAVRQLREAQGWSQEALAEKAQLNRSYVGEVERGKTI-----PSLITLDKLASALG 80 >gi|152970219|ref|YP_001335328.1| DNA-binding transcriptional regulator HipB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894707|ref|YP_002919441.1| DNA-binding transcriptional regulator HipB [Klebsiella pneumoniae NTUH-K2044] gi|262044303|ref|ZP_06017369.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330006263|ref|ZP_08305568.1| HTH-type transcriptional regulator HipB [Klebsiella sp. MS 92-3] gi|150955068|gb|ABR77098.1| persistence to inhibition of murein or DNA biosynthesis; regulatory protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547023|dbj|BAH63374.1| murein or DNA biosynthesis regulatory protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038362|gb|EEW39567.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535914|gb|EGF62339.1| HTH-type transcriptional regulator HipB [Klebsiella sp. MS 92-3] Length = 95 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + ++++ T LAR+ G+ + + + + ++FKIL + Sbjct: 18 QLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENH-----PDKTTLTTLFKILQSLGV 72 Query: 68 TICQLLDLPFSDGRTTEK 85 + + Sbjct: 73 VMTLNAKAAETAPAPDNN 90 >gi|145294487|ref|YP_001137308.1| hypothetical protein cgR_0442 [Corynebacterium glutamicum R] gi|140844407|dbj|BAF53406.1| hypothetical protein [Corynebacterium glutamicum R] Length = 474 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 16/173 (9%), Positives = 43/173 (24%), Gaps = 13/173 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ + LA GL + N+ + R + + +I A Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEAFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S + + + V + + Sbjct: 61 ATFFSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARAMVEMHQRYRNVR 120 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 +I + +T + + +V D + + D + Sbjct: 121 DKLSIAVDN---RTNTPEERRPIAEAVSM---PHEEVR--DFIYARQNYFDAL 165 >gi|77163558|ref|YP_342084.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254436424|ref|ZP_05049929.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27] gi|76881872|gb|ABA56554.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] gi|207087958|gb|EDZ65232.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27] Length = 76 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + LT + LA++A +D + +K +R E + ++ KI A + + Sbjct: 3 VGKNIKGLRIAAGLTQTQLAKEARIDQSGLSKIEREENE----SVTLPTLRKIAKALDCS 58 >gi|333025545|ref|ZP_08453609.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332745397|gb|EGJ75838.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 209 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + LAR+A L ++ ++ + R S ++ + L + + Sbjct: 12 VRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQR--RLALDSLVTLARALDTSLDQ 69 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + ++ G P + Sbjct: 70 LVETASDDVVTNPMIDGARGQMRWPVKADPGLTVVRQRMTEPPPD 114 >gi|326774788|ref|ZP_08234053.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326655121|gb|EGE39967.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 496 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + E + + ER T + LAR+ G+ ++ ++ P E + ++ A Sbjct: 13 LAERLSALRERSGRTYASLARRIGVSGSTLHRYCTGRTVPAEFAP-VERLARLCGAP 68 >gi|291559127|emb|CBL37927.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 278 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + + I ++ ++ LA K + + ++ + P+T+++ Sbjct: 18 MTEVTTMETKKIILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTV-----PNTDTLRL 72 Query: 61 ILAATNETICQ 71 + + +I Sbjct: 73 LSKEFDVSINM 83 >gi|293365764|ref|ZP_06612471.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291315767|gb|EFE56213.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 71 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K+ I + ++ L+ LA + G+ + + + + S E+ + Sbjct: 2 RKQTQNRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQ-----ISLENAKNVAEYF 56 Query: 66 N 66 Sbjct: 57 G 57 >gi|215429297|ref|ZP_03427216.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289752506|ref|ZP_06511884.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289693093|gb|EFD60522.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 140 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E +++ LA ++G+ ++ +R R PS + + +I A Sbjct: 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLSQIAKALRV 75 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L + + ++ + Sbjct: 76 SAEVLYVRAGILEPSETSQVRDAIITDTA 104 >gi|196041265|ref|ZP_03108560.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196027973|gb|EDX66585.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 149 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 37/110 (33%), Gaps = 5/110 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ E + +A+K G+ + K + +P +++ + N T Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +L+ + E++ G F + + + Sbjct: 58 LDELIKGNQNIKEKIHINEEDEDFEKENEFGFYIGFGLLIMSAFIDYEGI 107 >gi|167830092|ref|ZP_02461563.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 9] Length = 118 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT FS+ A+ +R L+ + LA++ G+ K +R PS E I + Sbjct: 1 MTPFSN-----ALVNYRKRAGLSQTNLAKQLGVAIHYVWKLERGVKPP----PSVEQIER 51 Query: 61 ILAATNETICQ 71 I AA + Sbjct: 52 IAAALDMGEAD 62 >gi|167765761|ref|ZP_02437814.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1] gi|167712478|gb|EDS23057.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1] Length = 264 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + + I ++ ++ LA K + + ++ + P+T+++ Sbjct: 4 MTEVTTMETKKIILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTV-----PNTDTLRL 58 Query: 61 ILAATNETICQ 71 + + +I Sbjct: 59 LSKEFDVSINM 69 >gi|161620977|ref|YP_001594863.1| hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|254703244|ref|ZP_05165072.1| hypothetical protein Bsuib36_04804 [Brucella suis bv. 3 str. 686] gi|260567822|ref|ZP_05838291.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261753875|ref|ZP_05997584.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|161337788|gb|ABX64092.1| Hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|260154487|gb|EEW89568.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261743628|gb|EEY31554.1| transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 182 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMVEFF 64 >gi|254831247|ref|ZP_05235902.1| hypothetical protein Lmon1_07812 [Listeria monocytogenes 10403S] Length = 158 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ + LA + G ++ R P +++ KI N + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGT-----REPDYQTLLKIAEFFNVS 56 >gi|154485008|ref|ZP_02027456.1| hypothetical protein EUBVEN_02726 [Eubacterium ventriosum ATCC 27560] gi|149733961|gb|EDM50080.1| hypothetical protein EUBVEN_02726 [Eubacterium ventriosum ATCC 27560] Length = 424 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 4/112 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S+K E I + ++ S LAR+ + P+ + + S++ + K+ Sbjct: 13 MDSNKTPSEIIAELCVEAGISKSELARRLEITPSQITRILNGDT----KTISSDILIKLT 68 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + LL + EK +P+L + G + + Sbjct: 69 KLFGVSADYLLGITDKKEIIKEKHTTRVPMLLMSSAFPLGRCIEFIESIDDV 120 >gi|126736840|ref|ZP_01752575.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6] gi|126721425|gb|EBA18128.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6] Length = 165 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 6/71 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + LA AG+ + + +R S E++ I + +L Sbjct: 6 IRKLRLEKGYSQEQLAEMAGISTRTLQRIERGANA------SPETLKCIASVLEIDFSEL 59 Query: 73 LDLPFSDGRTT 83 P T Sbjct: 60 RKEPDMTSDTP 70 >gi|110800489|ref|YP_695467.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110675136|gb|ABG84123.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 180 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 2/75 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ ++ LT LA G+ + + + + + E++ L ++ Sbjct: 3 IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALATSLKLDLKS 60 Query: 69 ICQLLDLPFSDGRTT 83 L Sbjct: 61 FFDDTLLEEDYYLKP 75 >gi|19705233|ref|NP_602728.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329087|ref|ZP_06871592.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713186|gb|AAL94027.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153806|gb|EFG94619.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 184 Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 36/191 (18%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + ++ LA K L + ++ ++ PS E++ KI + Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L++ D R E +KE G I +N Sbjct: 58 VAYLIEDEEDDIRNIEYIKKENIRY--------IESLDSNIKMG----------ILLSNN 99 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186 ++ S Y G + + I ++ K Sbjct: 100 REKNMEPIIYEIGVDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148 Query: 187 SRRGRSIDLMS 197 +G S+ S Sbjct: 149 LSKGDSLYFKS 159 >gi|317485947|ref|ZP_07944803.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922797|gb|EFV44027.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 87 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E +T LAR AG ++ +R R P ++ + A Sbjct: 11 GKILVTAREERGITQYRLARLAGRSIQQISQIERGE-----REPKLSALILLAHALGMEP 65 >gi|306843020|ref|ZP_07475647.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] gi|306286812|gb|EFM58353.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] Length = 470 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 4 FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI+ I R+ +LT + +A G+ P+ N +R R + + + K+ Sbjct: 1 MSERKIFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55 Query: 62 L 62 Sbjct: 56 A 56 >gi|297528604|ref|YP_003669879.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297251856|gb|ADI25302.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 148 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 9/117 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + LT L RK + S + + R P +++ + A + +I Sbjct: 5 QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGN-----RTPDMDTLKALADALDVSID 59 Query: 71 Q----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 P ++ E + G F + + E Sbjct: 60 YLLGRDNTQPTDTKLPALTEKDERDIQKELEKIIKGLKTGSGFAAFGGVDIDELDEE 116 >gi|282850841|ref|ZP_06260215.1| signal peptidase I [Lactobacillus gasseri 224-1] gi|311110905|ref|ZP_07712302.1| signal peptidase I [Lactobacillus gasseri MV-22] gi|282557793|gb|EFB63381.1| signal peptidase I [Lactobacillus gasseri 224-1] gi|311066059|gb|EFQ46399.1| signal peptidase I [Lactobacillus gasseri MV-22] Length = 213 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186 + + SM P + D +I ++ GD +++ G + K +I Sbjct: 28 FFVLNKFVFANLTVSGISMQPTFENNDRVIALRHAKIKQGDIVIVDAPDEPGALYIKRVI 87 Query: 187 SRRGRSID 194 G ++ Sbjct: 88 GLPGDTVV 95 >gi|227485462|ref|ZP_03915778.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236592|gb|EEI86607.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 131 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 16/40 (40%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 + + E LT LA K + + ++ + + R R Sbjct: 7 LKSLREEKKLTQGELAEKVNVSLKTISRYELGISKPRYRK 46 >gi|217967072|ref|YP_002352578.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336171|gb|ACK41964.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 105 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + ++HN+ LA K GL + + +R + PS +++ +I A N Sbjct: 2 NVGKRIREIRKKHNMKLEDLAEKTGLSLSYISLIERG-----LKNPSLKALERIAQALN 55 >gi|254412503|ref|ZP_05026277.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180813|gb|EDX75803.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] Length = 161 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%) Query: 9 IWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 +W A I + LT + A+K G+ + ++ + E S+ Sbjct: 97 LWNAQLIKALRRYMGLTQAEFAQKLGVRQATVSQWENSAYEPTLATSKYLSLI 149 >gi|114569372|ref|YP_756052.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339834|gb|ABI65114.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 70 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 15/42 (35%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + + M RH LT + LA G+ S N + Sbjct: 6 LGNRLKEMRARHGLTQAQLAEAVGVTRKSINTVENRVFTPST 47 >gi|326335649|ref|ZP_08201836.1| HTH_3 family transcriptional regulator protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692415|gb|EGD34367.1| HTH_3 family transcriptional regulator protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 141 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 F+ + + R+ E + L+ S LA G+ +S + + PS + + +I+ Sbjct: 1 MFNQQDFIARLQRLMEYNELSASALADHLGVPRSSISHLLSERNK-----PSLDFVLRII 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEK 88 E L + EKKEK Sbjct: 56 DKYPEVDLYWLLYGDGNFPKEEKKEK 81 >gi|323486126|ref|ZP_08091457.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum WAL-14163] gi|323692982|ref|ZP_08107203.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323400693|gb|EGA93060.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum WAL-14163] gi|323502983|gb|EGB18824.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 69 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 5/47 (10%), Positives = 15/47 (31%), Gaps = 1/47 (2%) Query: 6 HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 H+ I + + ++ LA G+ + + + + Sbjct: 3 HELILKNRLKTARAEQGISQGELAAMVGVSRQTISYIETGQFNPTAK 49 >gi|315612296|ref|ZP_07887210.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315689|gb|EFU63727.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 167 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + + + LA + + S +K + + P E I ++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T LL S+ +T +E Y+ S G + Sbjct: 57 TTDYLLLDENSEKSSTAVILEEDKDNYYKEVKSFGLWQVIYI 98 >gi|300940122|ref|ZP_07154730.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 21-1] gi|300455059|gb|EFK18552.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 21-1] Length = 94 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 19/37 (51%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 ++ A+ + +++ T S LA+K G+ + + + Sbjct: 18 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 54 >gi|333025931|ref|ZP_08453995.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332745783|gb|EGJ76224.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 107 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + +A+ L+ S LA +AG+ ++ + G + P + + L Sbjct: 33 DLGQAVHDRRVELGLSQSELAERAGMTQPQVSRME--GGDTVPTLPLLRRLARALDGALN 90 Query: 68 TICQLLDLPFSDGRTT 83 D + Sbjct: 91 LAIDENDSHVTFTPHA 106 >gi|296168076|ref|ZP_06850142.1| PbsX family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896883|gb|EFG76511.1| PbsX family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 142 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA K+G+ ++ +R R PS E + +I A Sbjct: 21 DIGGFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERG-----LRKPSAEVLNQIAKALRV 75 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L + + + ++ + Sbjct: 76 SAEVLYVRAGILEPSDKSQVRDAIITDTA 104 >gi|260893216|ref|YP_003239313.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260865357|gb|ACX52463.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 93 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + R LT LAR+ G ++ + + R + K+ A Sbjct: 28 RLLAELVRRRLEKGLTQEELARRIGTRQSAIARLESGRTSPTLR-----MLKKVADAL 80 >gi|254705610|ref|ZP_05167438.1| hypothetical protein BpinM_00991 [Brucella pinnipedialis M163/99/10] gi|261313020|ref|ZP_05952217.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261302046|gb|EEY05543.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] Length = 182 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|254295523|ref|YP_003061545.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] gi|254044054|gb|ACT60848.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 86 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 1 MTS--FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT S + + +AI ++ LT + LA + + + +K + R + Sbjct: 1 MTDIIRSPRNVGDAIRKIRLEKGLTQTELAARVNVRQATISKLESGEPATRLSTLFDVLM 60 Query: 59 F 59 Sbjct: 61 A 61 >gi|237733315|ref|ZP_04563796.1| predicted protein [Mollicutes bacterium D7] gi|229383696|gb|EEO33787.1| predicted protein [Coprobacillus sp. D7] Length = 138 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 2/110 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I ++ L+ LA + + + +K + + K L T Sbjct: 3 LGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNI--DKIMDVAKALEITLNE 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L + + E ++ L + G + Sbjct: 61 LLGLEEDSNDEYAKLESILNQVVLTQNNEIIRNKKYLKMGLVIGTGIFII 110 >gi|223985090|ref|ZP_03635186.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM 12042] gi|223962912|gb|EEF67328.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM 12042] Length = 136 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 38/104 (36%), Gaps = 5/104 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S K + I + + +T + LA K + + +K +R P +S+ ++ Sbjct: 4 SGKTMGMVIASLRKAQGMTQAELAAKMQVTDKAVSKWERDLS-----CPDIQSLPRLAEI 58 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 ++ +L+ + ++ + + L+ + G Sbjct: 59 LEVSVEELMQGETRPASSVKRINEIVDLVLKALVVAMGIALVVC 102 >gi|218690782|ref|YP_002398994.1| phage regulatory protein cI [Escherichia coli ED1a] gi|218428346|emb|CAR09126.1| phage regulatory protein cI [Escherichia coli ED1a] Length = 210 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 28/214 (13%) Query: 11 EAIDRMAERHNLT-PSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68 AI+R+ E + T L+ + ++ N+ R + I + T + Sbjct: 14 AAIERLLEAYGFTTKQALSEHLNVSKSTMANRVLRD-------SFPADWIIQCALETGVS 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRS 125 + L S + + EK + P G N ++ EI Sbjct: 67 LLWLATGQGSM-KEGYEPEKRSHNENKQAIKPLSKLITPSIPKGTLENGQLSID-EEIFL 124 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + A + +T +++ +++ + G I+ + Sbjct: 125 DHSILPADYEESMFLETPTDCY----------LIDKSVKQVSNGF-WLINIDGMIIIAKI 173 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G I + N D+E I R + Sbjct: 174 MRIPGNKIVV---NQDEASFECSADDVEVIGRAV 204 >gi|213158984|ref|YP_002320982.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215482031|ref|YP_002324213.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|301345648|ref|ZP_07226389.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB056] gi|301512343|ref|ZP_07237580.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB058] gi|301596168|ref|ZP_07241176.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB059] gi|332851919|ref|ZP_08433805.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332868837|ref|ZP_08438430.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|213058144|gb|ACJ43046.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213988455|gb|ACJ58754.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|332729612|gb|EGJ60949.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332733090|gb|EGJ64289.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 183 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 17/144 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + H + I + + H+L+ LA +AG+ + + + S + I Sbjct: 6 SVLQH--VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 58 Query: 62 LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 A ++ P +K+E + L PS S + G Sbjct: 59 AAVLGVDFRTIVSAPELKEHALVNALAWQGQKEESKATFLASVPSRSQVELWTWSLAVG- 117 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137 + V + IY ++ + Sbjct: 118 -ESYVAEADAEGWQELIYVLEGEL 140 >gi|163845040|ref|YP_001622695.1| hypothetical protein BSUIS_B0917 [Brucella suis ATCC 23445] gi|163675763|gb|ABY39873.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 182 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|126731204|ref|ZP_01747012.1| transcriptional regulator, XRE family protein [Sagittula stellata E-37] gi|126708506|gb|EBA07564.1| transcriptional regulator, XRE family protein [Sagittula stellata E-37] Length = 464 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +F I + R+ H T +A++ G+ + N ++ R S + K Sbjct: 1 MKTF----IGPRLRRLRIEHGQTQVQMAKELGISTSYVNLLEKNE-----RSVSVPVLLK 51 Query: 61 ILAATNETICQ 71 + A Sbjct: 52 LFEAYGVDWRD 62 >gi|186681969|ref|YP_001865165.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464421|gb|ACC80222.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 83 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 6/78 (7%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M +I + R + LA GL T ++ +R + PS + Sbjct: 1 MQPSKLDQILGLELQRRRTEKGWSQEYLAEVTGLHRTYISQLERG-----LKSPSVRVLS 55 Query: 60 KILAATNETICQLLDLPF 77 I A T+ + L Sbjct: 56 HITKALGMTMSEFLQPVE 73 >gi|325123768|gb|ADY83291.1| hypothetical protein BDGL_002705 [Acinetobacter calcoaceticus PHEA-2] Length = 209 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 17/157 (10%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T H + I + + +L+ LA +AG+ + + + S + I Sbjct: 32 TVLQH--VGTNIRLLRDERDLSQQDLADQAGVSRRTIAALETGQVN-----ISLAKLDAI 84 Query: 62 LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 A ++ P + +E + LL PS S G Sbjct: 85 AAVLGVDFKTIVSAPEHKEHAVVNALAWQGKDEESKATLLASVPSRSQVELWIWSLAVG- 143 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + V + IY ++ + T T ++P Sbjct: 144 -ESYVAEADADGWQEIIYVLEGELTIQFTDSKKIIPA 179 >gi|317485601|ref|ZP_07944477.1| hypothetical protein HMPREF0179_01830 [Bilophila wadsworthia 3_1_6] gi|316923138|gb|EFV44348.1| hypothetical protein HMPREF0179_01830 [Bilophila wadsworthia 3_1_6] Length = 229 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 57/218 (26%), Gaps = 27/218 (12%) Query: 26 GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85 A + G+ + E P ++ I A ++ LL + Sbjct: 2 DFALRLGITRSRLCNYINDRSE-----PDYATLCTIAEALQVSVDYLLGRNGIQDSDFQG 56 Query: 86 KEKEIPLLY---FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD---TR 139 + P S + VP + + Sbjct: 57 SRIFSDFIIGREKPASEGMTVWIPLYLSRSETLEEPPVPSGWLRETSSFVQTGEFRQPYA 116 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNC-------GDRLLIKPRTGDIV---AKVLISRR 189 D SM P GDI + + D ++ GD V K + Sbjct: 117 IIVGDDSMAPEIMPGDIAYIQPCFIYHPFMEQNLGRDLFGVRLDAGDAVGTSLKRCCVQS 176 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEW---IARIL--WAS 222 + S N Y ++M+ I + I +++ W S Sbjct: 177 N-LLIFYSNNVKYSPVILDMNKILFVPLIGKVVSIWRS 213 >gi|300214961|gb|ADJ79377.1| DNA-binding protein [Lactobacillus salivarius CECT 5713] Length = 203 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 +KI + I + + + T + LA+K G+ + +K + Sbjct: 3 QEKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIP 45 >gi|296158619|ref|ZP_06841449.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295891187|gb|EFG70975.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 212 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ +T L+R AG+ + ++ +R P+ +++ A Sbjct: 34 RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L + EIP L + + G + + Sbjct: 89 SLDSLFAPQKTPEAIAVSGPHEIPTLSGHDARYQLRVWGPIELAGK-FEWYEL 140 >gi|294794988|ref|ZP_06760123.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] gi|294454350|gb|EFG22724.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] Length = 142 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 8/122 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +K I++ I + L+ LA K G ++ NK + ++ + I K Sbjct: 20 NKTIYDRIRERRIQLGLSQEDLAIKMGYKSRSTINKIESGAVD-----IARNKIEKFAEV 74 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 N T L+D + E + + + + Sbjct: 75 LNTTPAYLMDWNDTPKEYYIDPEVSKYAQAVKDNPNLRILFDASKDMSK--DDIDFVVNM 132 Query: 125 SP 126 Sbjct: 133 IE 134 >gi|291541388|emb|CBL14498.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 280 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ NL+ LA K G+ + +K +R P T+++ + ++ Sbjct: 7 NRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEA-----SPDTDNLILLADIYGVSLD 61 Query: 71 Q 71 + Sbjct: 62 E 62 >gi|238018832|ref|ZP_04599258.1| hypothetical protein VEIDISOL_00692 [Veillonella dispar ATCC 17748] gi|237864598|gb|EEP65888.1| hypothetical protein VEIDISOL_00692 [Veillonella dispar ATCC 17748] Length = 125 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 3/121 (2%) Query: 1 MTSFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M+ +K I E I R+ + + + + GL T+F + R E + Sbjct: 1 MSDLGNKAIMAENIQRLMDSRGIDRNKICADLGLKYTTFTDWVKGNT--YPRIDKIELLA 58 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + R + + + D + Sbjct: 59 NYFGVPKSELVEKYTDGYYTDREAAEFAEYLRTRPGARMLFSAAKDISKEDLEKAVEYIE 118 Query: 120 V 120 + Sbjct: 119 L 119 >gi|256371092|ref|YP_003108916.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256007676|gb|ACU53243.1| transcriptional regulator, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 205 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E + E+ L+ + +A + GL ++ +R G+ PS +S+ I A Sbjct: 8 IGERLRHAREQRGLSLAAVAERTGLSKGFLSRVERDGV-----SPSIDSLVAIADAVG 60 >gi|229083904|ref|ZP_04216210.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] gi|228699402|gb|EEL52081.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] Length = 262 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTSRQAISKWENGQG-----FPETEKLLMIGNIFEVS 57 >gi|227892275|ref|ZP_04010080.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741] gi|227865916|gb|EEJ73337.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741] Length = 211 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 +KI + I + + + T + LA+K G+ + +K + Sbjct: 11 QEKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIP 53 >gi|218134936|ref|ZP_03463740.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] gi|217990321|gb|EEC56332.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] Length = 188 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 5/97 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S ++I +AI + +T A+ G + K + I + + + +I Sbjct: 1 MSSPEEIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMK-----IDVLKQIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 N +LL ++ + + S Sbjct: 56 NELNVPWQELLSPEDNNIPKDNTATEYPAYEFHTMSD 92 >gi|163849811|ref|YP_001637854.1| peptidase S24/S26 domain-containing protein [Methylobacterium extorquens PA1] gi|163661416|gb|ABY28783.1| peptidase S24 and S26 domain protein [Methylobacterium extorquens PA1] Length = 151 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 5/111 (4%) Query: 111 TGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168 G PE + SM GD+ ++ +++ G Sbjct: 28 AGFPSPADDFPENALELPRWLVPNPPATFLWRIGGDSMRDAGIFDGDLACVDRSLKPGHG 87 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 ++ G++ K ++ G L N P+ + E++++ + Sbjct: 88 SVVVAAVD-GEMSIKRMV-VEGNRAHLSFDNSDLPIYALEELAEVNVWGVV 136 >gi|148985005|ref|ZP_01818248.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|147922703|gb|EDK73820.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|301800013|emb|CBW32605.1| putative epsilon antitoxin [Streptococcus pneumoniae OXC141] Length = 158 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 6/134 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQHEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHK 141 + IQT + Sbjct: 117 DLSDLIQTNIYLVE 130 >gi|313898421|ref|ZP_07831958.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956803|gb|EFR38434.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 220 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 5/84 (5%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 +++ +T LA + G+ + K ++ I PS E + + TI L+ Sbjct: 8 EYRKKNMMTQEELADRLGVSRQTITKWEKGTI-----LPSLEYLIDLSRLFGVTIDHLVK 62 Query: 75 LPFSDGRTTEKKEKEIPLLYFPPS 98 ++ + + + Sbjct: 63 DDDCICESSHQVHTTALAEFLVTA 86 >gi|306838646|ref|ZP_07471482.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406289|gb|EFM62532.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 182 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|300856317|ref|YP_003781301.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300436432|gb|ADK16199.1| predicted DNA binding protein [Clostridium ljungdahlii DSM 13528] Length = 401 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/175 (9%), Positives = 41/175 (23%), Gaps = 14/175 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + T LA G+ + ++ + P E++ KI+ Sbjct: 19 GERLKSARKYRGKTIKDLAEDIGVSKQAISQFENGKST-----PLFETLIKIVDKLKFPR 73 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPH- 127 + + + + + L + N + PE+ P Sbjct: 74 EYFYEKDKVNIQLGNTYFRALSKLTKKEENIQKEKTKFIGKIFNFLNEYIEFPELNLPDF 133 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 I+ + + L+ ++ T Sbjct: 134 EEDMEIEDMAMGLRDYWKLGEEPIKDMVYLL-------EKNGIIITSMNTNTDTI 181 >gi|300787324|ref|YP_003767615.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796838|gb|ADJ47213.1| XRE family transcriptional regulator with ATPase domain [Amycolatopsis mediterranei U32] Length = 740 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 4/94 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + L+ LA +G+ + + +R R P E++ ++ A T Sbjct: 10 LAEMLAGLRSSRGLSQEQLAELSGISVRAIGEIERGAT----RRPQRETLRALIGALGLT 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + + P + Sbjct: 66 PEEQEAFARTARTAPPPDTRRRRTAVRPALPAPV 99 >gi|297157341|gb|ADI07053.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 107 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +A+ L+ + LA +AG+ ++ + G + P + K L Sbjct: 33 DLGQAVYDRRIELGLSQAELAERAGMTQPQVSRME--GGDTVPTLPLLRRLAKALD 86 >gi|326315473|ref|YP_004233145.1| helix-turn-helix domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372309|gb|ADX44578.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 189 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 12/131 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE- 67 + E + R+ L+ LA AGL + + S S+ ++ AA Sbjct: 18 VSENLRRLRAEAGLSQLALAEAAGLSRRMISSLEAGDTN-----ISLASLDRLAAALGVG 72 Query: 68 ------TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + K+ LL + P+ S G ++ P Sbjct: 73 FVALVSDPSARSQRVDALAWKGKSKDSRGVLLGYVPATREAQLWSWALAPGETYHGQADP 132 Query: 122 EIRSPHNGIYA 132 + A Sbjct: 133 AGWHEMVFVVA 143 >gi|229182053|ref|ZP_04309349.1| transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228601468|gb|EEK58993.1| transcriptional regulator, XRE [Bacillus cereus 172560W] Length = 108 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T LA+ L ++ +R R P ++ +I + Sbjct: 5 GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFKVS 58 >gi|164516364|emb|CAP48298.1| putative integron gene cassette protein [uncultured bacterium] Length = 101 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I E I + + +A+ G+ + + +R G + P+ + KI Sbjct: 2 KDIGELIKARRLELGYSSATVAKHLGITAQAVSNWERQG-----KSPAKALLPKIADLLG 56 Query: 67 ETICQ 71 + + Sbjct: 57 IRVEE 61 >gi|148258862|ref|YP_001243447.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411035|gb|ABQ39541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 112 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + L+ S +A+ GL S ++ + R S + + ++ + Sbjct: 2 QIAERLKEARKLAGLSQSHVAKMLGLHRPSISEMEAGN-----RRVSADELARLAETYDV 56 Query: 68 TICQ 71 ++ Sbjct: 57 SVAW 60 >gi|146297633|ref|YP_001181404.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411209|gb|ABP68213.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 5/86 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + ++ LT +A G++ T + + R S ++ + Sbjct: 8 KKIGQKLQEARKKAGLTQEQVADYLGVNKTLISYYENGI-----REISIATLRNLSNLYG 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL 92 T+ L + T + L Sbjct: 63 YTMSYFLSDDEINEPTISFSFRADEL 88 >gi|85711364|ref|ZP_01042423.1| putative DNA-binding protein [Idiomarina baltica OS145] gi|85694865|gb|EAQ32804.1| putative DNA-binding protein [Idiomarina baltica OS145] Length = 174 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + + ++ + + + A G+ + +R P+ +++K+ Sbjct: 5 HHTVARRLKKLRKDKGWSLTACAEHTGVSKAMLGQIERQES-----SPTLATLWKLATGF 59 Query: 66 NETICQLLDLPFSDGRTTEKKEK 88 N ++ LL+ E+ Sbjct: 60 NVSLSWLLNDEQQPMTFDFAHER 82 >gi|328956524|ref|YP_004373910.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328672848|gb|AEB28894.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 96 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + +N+T L+ + + P + + + S +++ I Sbjct: 2 EIGNRIQELRKLNNMTAKELSERINVSPPFISAIENNSTK-----LSLKTLAHICDVLGV 56 Query: 68 TICQLLD 74 TI + + Sbjct: 57 TISEFFN 63 >gi|315651586|ref|ZP_07904603.1| transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486145|gb|EFU76510.1| transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 75 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 13/40 (32%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + +L+ LA G+ + N ++ R Sbjct: 7 RLKSARAAKDLSQQQLADMVGVSRQTINAIEKGDYNPTIR 46 >gi|312126546|ref|YP_003991420.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776565|gb|ADQ06051.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 145 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ E T + LA AG++PTS +++R E S ++ +I A + L Sbjct: 15 IKKLREEKGWTINQLALYAGVNPTSIMRAERGESE-----LSLGNLLRIAKALKVDLNTL 69 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 ++ + +++ P Sbjct: 70 VEESMGQIKLGDEELVPEEKDKTPDIYEII 99 >gi|312890063|ref|ZP_07749607.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297595|gb|EFQ74720.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 135 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 1 MTS---FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 MT+ +++ I I R+ E + LA + G+ + ++ ++ ES Sbjct: 1 MTTSEKPTNQHIGRKISRIRELRGIKQEDLATQLGVSQKTVSRMEQSE---VIEDDVLES 57 Query: 58 IFKILAAT 65 I KIL T Sbjct: 58 IAKILGVT 65 >gi|307727246|ref|YP_003910459.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307587771|gb|ADN61168.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 215 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 60/199 (30%), Gaps = 31/199 (15%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-------------- 47 + HK + + + + LT + L+ ++G+ ++ +K++R I Sbjct: 18 PALDHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 77 Query: 48 -------GRNRWPSTESIFKILAATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSG 99 GR R P+ ++ A + ++ +P+ + Sbjct: 78 LEFDAIFGRRRKPAAGAMKPSFTAAGKQHVYDTPNYEYGMLANNLTGKRMMPMRAHIHAR 137 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 + F + +G + + + + R S+ Y + + Sbjct: 138 AVADFPEYIRHSGE-----EFVFLLAGELELRFENGKSFRL-MPGDSL---YFDSSVGHI 188 Query: 160 NSAIQVNCGDRLLIKPRTG 178 ++ D L+ T Sbjct: 189 YLSVGDEDADALVCCVDTD 207 >gi|149370530|ref|ZP_01890219.1| hypothetical protein SCB49_13740 [unidentified eubacterium SCB49] gi|149356081|gb|EDM44638.1| hypothetical protein SCB49_13740 [unidentified eubacterium SCB49] Length = 104 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 6/72 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + + + LA K G+ +S ++ R S S+ I + Sbjct: 18 GEKLSALRVAAGWSQTELAEKTGMSRSSIAGIEKG------RNFSIASLISIARSLELLD 71 Query: 70 CQLLDLPFSDGR 81 Sbjct: 72 EFDFFFKEETYE 83 >gi|323487380|ref|ZP_08092678.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163] gi|323693858|ref|ZP_08108049.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum WAL-14673] gi|323399286|gb|EGA91686.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163] gi|323502110|gb|EGB17981.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum WAL-14673] Length = 115 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 5/101 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + T LA G+ + E P T I I + + Sbjct: 3 IGERLKIARKARGYTQDSLAEALGMSRGVITNIEYGRAE-----PQTLVIKAICDILHIS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 L+ + + ++ L Y + + + Sbjct: 58 QTWLMTGNGNMDIDFDLEKSARLLSYIYNAAKDLTVEEQDY 98 >gi|268609129|ref|ZP_06142856.1| hypothetical protein RflaF_06476 [Ruminococcus flavefaciens FD-1] Length = 163 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + + + + T L K G+ + ++ + Sbjct: 6 IGKFLKELRKEKGYTQETLGEKIGVTNKTVSRWETGTYIP 45 >gi|260433144|ref|ZP_05787115.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416972|gb|EEX10231.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 129 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 17/46 (36%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + E +T + LAR+ G+ + + E R S Sbjct: 16 GDRLAGAREAAGMTQAQLARRLGVKKATVVGWENDMSEPRANKLSM 61 >gi|257877770|ref|ZP_05657423.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811936|gb|EEV40756.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 72 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + E +L LA+ + T++++ + ++ T+S+ K+ + ++ Sbjct: 2 YHRIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLD-----IPTQSLIKLADFYSTSV 56 Query: 70 CQLLDLPFSDGRTTEK 85 LL+L Sbjct: 57 DYLLNLTDHQKPYPRN 72 >gi|229199676|ref|ZP_04326321.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] gi|228583822|gb|EEK41995.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] Length = 61 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ ++ +T LA K G+ + + PS + KI + Sbjct: 4 ITKLRKQKAITQEELAVKVGITRAYLSNLENG-----KHKPSLDVALKISEVLGSS 54 >gi|167590868|ref|ZP_02383256.1| gp48 [Burkholderia ubonensis Bu] Length = 110 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 A+ + LT + +A + G ++ ++ + + PS ++ K AA Sbjct: 47 LRALLAARQEAGLTQAQVAERMGTTASAVSRLEASLTSEK-HSPSFATLRKYAAACG 102 >gi|217958091|ref|YP_002336635.1| hypothetical protein BCAH187_A0631 [Bacillus cereus AH187] gi|217068076|gb|ACJ82326.1| conserved domain protein [Bacillus cereus AH187] Length = 73 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ ++ +T LA K G+ + + PS + KI + Sbjct: 4 ITKLRKQKAITQEELAVKVGITRAYLSNLENG-----KHKPSLDVALKISEVLGSS 54 >gi|147919967|ref|YP_686279.1| hypothetical protein RCIX1743 [uncultured methanogenic archaeon RC-I] gi|110621675|emb|CAJ36953.1| conserved hypothetical protein [uncultured methanogenic archaeon RC-I] Length = 185 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 10/112 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E+I + + LT + LA KA + + + ++ P ++ IL A +E Sbjct: 7 ESIKKRRIKLGLTQASLAEKANVSQPLIARIESGDVD-----PRLSTLRSILTALDEMER 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-----DSGVFPTGNKWNT 117 + + F G P G+ Sbjct: 62 CKVTAKDLMTSPVIAVTSSDTVDNAVKLMEKHGFSQLPVIDGGVPVGSISEN 113 >gi|29566890|ref|NP_818455.1| gp155 [Mycobacterium phage Omega] gi|29425615|gb|AAN12797.1| gp155 [Mycobacterium phage Omega] Length = 436 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 5/73 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PSTESIF 59 S ++ E + R L+ + +A + G P+S + R PS E Sbjct: 118 SPQRQAEVLRNARTRAGLSRAEVAERIGCTPSSVRDWEEGRSRAVGRSLEWITPSPEYRD 177 Query: 60 KILAATNETICQL 72 ++ T + Sbjct: 178 RLADLLGYTSDER 190 >gi|42780950|ref|NP_978197.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42736871|gb|AAS40805.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 142 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 5/110 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ E + +A+K G+ + + + +P +++ + N T Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAIYRWENNKS-----YPDIDNLILLSEMYNVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + L+ + E + G F + ++ + Sbjct: 58 LDALIKGNQNMKEKIHIDEDDEDFEKENEFGFYIGFGLLIMSAFVEYEKI 107 >gi|17988717|ref|NP_541350.1| MerR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23500652|ref|NP_700092.1| transcriptional regulator [Brucella suis 1330] gi|148558695|ref|YP_001257846.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225629381|ref|ZP_03787414.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225686684|ref|YP_002734656.1| hypothetical protein BMEA_B0907 [Brucella melitensis ATCC 23457] gi|254695939|ref|ZP_05157767.1| hypothetical protein Babob3T_15192 [Brucella abortus bv. 3 str. Tulya] gi|254700125|ref|ZP_05161953.1| hypothetical protein Bsuib55_04584 [Brucella suis bv. 5 str. 513] gi|254710842|ref|ZP_05172653.1| hypothetical protein BpinB_11376 [Brucella pinnipedialis B2/94] gi|254720212|ref|ZP_05182023.1| hypothetical protein Bru83_11898 [Brucella sp. 83/13] gi|256029224|ref|ZP_05442838.1| hypothetical protein BpinM2_00940 [Brucella pinnipedialis M292/94/1] gi|256043791|ref|ZP_05446713.1| hypothetical protein Bmelb1R_04819 [Brucella melitensis bv. 1 str. Rev.1] gi|256058912|ref|ZP_05449126.1| hypothetical protein Bneo5_00926 [Brucella neotomae 5K33] gi|256157420|ref|ZP_05455338.1| hypothetical protein BcetM4_00971 [Brucella ceti M490/95/1] gi|256253602|ref|ZP_05459138.1| hypothetical protein BcetB_04769 [Brucella ceti B1/94] gi|256262183|ref|ZP_05464715.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260167682|ref|ZP_05754493.1| hypothetical protein BruF5_04739 [Brucella sp. F5/99] gi|260564976|ref|ZP_05835461.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|261216367|ref|ZP_05930648.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261220739|ref|ZP_05935020.1| transcriptional regulator [Brucella ceti B1/94] gi|261318414|ref|ZP_05957611.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261322848|ref|ZP_05962045.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750617|ref|ZP_05994326.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757118|ref|ZP_06000827.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|265985222|ref|ZP_06097957.1| transcriptional regulator [Brucella sp. 83/13] gi|265986212|ref|ZP_06098769.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990218|ref|ZP_06102775.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265995908|ref|ZP_06108465.1| transcriptional regulator [Brucella ceti M490/95/1] gi|306841347|ref|ZP_07474056.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|17984528|gb|AAL53614.1| transcriptional regulator, merr family [Brucella melitensis bv. 1 str. 16M] gi|23464297|gb|AAN34097.1| transcriptional regulator, putative [Brucella suis 1330] gi|148369980|gb|ABQ62852.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225615877|gb|EEH12926.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225642789|gb|ACO02702.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260152619|gb|EEW87712.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260917974|gb|EEX84835.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919323|gb|EEX85976.1| transcriptional regulator [Brucella ceti B1/94] gi|261297637|gb|EEY01134.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261298828|gb|EEY02325.1| transcriptional regulator [Brucella neotomae 5K33] gi|261737102|gb|EEY25098.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|261740370|gb|EEY28296.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262550205|gb|EEZ06366.1| transcriptional regulator [Brucella ceti M490/95/1] gi|263000887|gb|EEZ13577.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263091879|gb|EEZ16201.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264658409|gb|EEZ28670.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264663814|gb|EEZ34075.1| transcriptional regulator [Brucella sp. 83/13] gi|306288650|gb|EFM59986.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|326411076|gb|ADZ68140.1| MerR family transcriptional regulator [Brucella melitensis M28] gi|326554367|gb|ADZ89006.1| MerR family transcriptional regulator [Brucella melitensis M5-90] Length = 182 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|56416260|ref|YP_153335.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365183|ref|YP_002144820.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|11992069|gb|AAG42426.1|AF306456_3 regulatory protein SptAIC [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|22135357|gb|AAM93162.1|AF508974_2 regulatory protein SbaIC [Salmonella enterica] gi|56130517|gb|AAV80023.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096660|emb|CAR62275.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 78 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I ++ ER L+ LA AGL T +R R S ++I +I +A + Sbjct: 16 HNIRKLRERQGLSQEALADLAGLHRTYIGSVERCE-----RNISIDNIDRIASALGVSP 69 >gi|53720722|ref|YP_109708.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] gi|167740433|ref|ZP_02413207.1| putative transcriptional regulator [Burkholderia pseudomallei 14] gi|167817647|ref|ZP_02449327.1| putative transcriptional regulator [Burkholderia pseudomallei 91] gi|167912774|ref|ZP_02499865.1| putative transcriptional regulator [Burkholderia pseudomallei 112] gi|254198530|ref|ZP_04904951.1| putative DNA-binding protein [Burkholderia pseudomallei S13] gi|254300676|ref|ZP_04968121.1| putative DNA-binding protein [Burkholderia pseudomallei 406e] gi|52211136|emb|CAH37125.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] gi|157810610|gb|EDO87780.1| putative DNA-binding protein [Burkholderia pseudomallei 406e] gi|169655270|gb|EDS87963.1| putative DNA-binding protein [Burkholderia pseudomallei S13] Length = 356 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 5/118 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R LT LA K+G+ + + + G+ PSTE++ + + Sbjct: 7 LAIARKRRQLTKKELAEKSGITAVTLTRLE----TGKTADPSTETLETLARVLGYPVDFF 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHNG 129 + + T + + + + F +P P Sbjct: 63 FGQDYEELTTDAASFRSLSTMSAAQRDAALAAGQIAFSLAEWINERFDLPVPDLPDLR 120 >gi|34762120|ref|ZP_00143128.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741413|ref|ZP_04571894.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256846585|ref|ZP_05552042.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294784172|ref|ZP_06749473.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] gi|27888197|gb|EAA25255.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430945|gb|EEO41157.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256718354|gb|EEU31910.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294488242|gb|EFG35587.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] Length = 184 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 36/191 (18%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + ++ LA K L + ++ ++ PS E++ KI + Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L++ D R E +KE G I +N Sbjct: 58 VAYLIEDEEDDIRNIEHIKKENIRY--------IESLDSNIKMG----------ILLSNN 99 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186 ++ S Y G + + I ++ K Sbjct: 100 REKNMEPIIYEIGIDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148 Query: 187 SRRGRSIDLMS 197 +G S+ S Sbjct: 149 LSKGDSLYFKS 159 >gi|328885617|emb|CCA58856.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712] Length = 468 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R+ E ++ + LAR + P+ N+ + R + + ++ A Sbjct: 7 GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDA-----RPLTVPVLLRLTEAFGVDP 61 >gi|328955940|ref|YP_004373273.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456264|gb|AEB07458.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 218 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + LA++ GL + +K +R P T+++ + + ++ Sbjct: 7 QRLAELRRTKGYSQEELAQRLGLSRQAISKWERAES-----SPDTDNLIALARLYSVSLD 61 Query: 71 Q 71 + Sbjct: 62 E 62 >gi|321157319|emb|CBW39301.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 116 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ +LT +A K G+ ++ +R + P+ +++ KI N +I Sbjct: 5 ERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKK-----PTQDNLVKIAQVLNVSID 59 Query: 71 QLLDLPFSD 79 L+ Sbjct: 60 YLVGNSDEH 68 >gi|306844614|ref|ZP_07477201.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306275058|gb|EFM56821.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] Length = 470 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 4 FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI+ I R+ +LT + +A G+ P+ N +R R + + + K+ Sbjct: 1 MSERKIFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55 Query: 62 L 62 Sbjct: 56 A 56 >gi|300725006|ref|YP_003714331.1| hipB protein [Xenorhabdus nematophila ATCC 19061] gi|297631548|emb|CBJ92255.1| hipB protein [Xenorhabdus nematophila ATCC 19061] Length = 83 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + AI ++ LT A + G+ ++ + + E++FK Sbjct: 1 MKITSPQTLAVAIREQRKKKRLTQKDTADRVGIKQSTVSGFEN-----SPEKSKLETLFK 55 Query: 61 ILAATN 66 +L++ Sbjct: 56 LLSSLG 61 >gi|238922428|ref|YP_002935942.1| hypothetical protein EUBELI_20664 [Eubacterium eligens ATCC 27750] gi|238874100|gb|ACR73808.1| Hypothetical protein EUBELI_20664 [Eubacterium eligens ATCC 27750] Length = 48 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 18/43 (41%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 S KKI + + + ++T LA K + + ++ + Sbjct: 6 SMDQKKIGRFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGV 48 >gi|228909441|ref|ZP_04073266.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] gi|228850218|gb|EEM95047.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|228922337|ref|ZP_04085644.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837392|gb|EEM82726.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|228953898|ref|ZP_04115937.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805866|gb|EEM52446.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|228940714|ref|ZP_04103277.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973633|ref|ZP_04134215.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980191|ref|ZP_04140505.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228779549|gb|EEM27802.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228786094|gb|EEM34091.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818958|gb|EEM65020.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|229047313|ref|ZP_04192912.1| Helix-turn-helix domain protein [Bacillus cereus AH676] gi|228724055|gb|EEL75401.1| Helix-turn-helix domain protein [Bacillus cereus AH676] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|229071129|ref|ZP_04204355.1| Helix-turn-helix domain protein [Bacillus cereus F65185] gi|228712069|gb|EEL64018.1| Helix-turn-helix domain protein [Bacillus cereus F65185] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|229075522|ref|ZP_04208510.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] gi|228707618|gb|EEL59803.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|229098072|ref|ZP_04229020.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] gi|228685263|gb|EEL39193.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|229104167|ref|ZP_04234839.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] gi|228679184|gb|EEL33389.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] Length = 272 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|229134433|ref|ZP_04263246.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] gi|228649054|gb|EEL05076.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|229146197|ref|ZP_04274572.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] gi|228637256|gb|EEK93711.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] Length = 277 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNET 68 + Sbjct: 69 FEVS 72 >gi|326446151|ref|ZP_08220885.1| hypothetical protein SclaA2_34032 [Streptomyces clavuligerus ATCC 27064] Length = 571 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 1/54 (1%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + M E + + LAR+ G+ P + + P E + ++ Sbjct: 13 RRLREMREASGRSYAALARRVGVSPATLYRYCSGRTVPLEFAP-VERLARLCGC 65 >gi|28211495|ref|NP_782439.1| putative transcriptional regulator sinR [Clostridium tetani E88] gi|28203936|gb|AAO36376.1| putative transcriptional regulator sinR [Clostridium tetani E88] Length = 171 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I R+ E+ L + L+R +G++ + + +R + P+ + K+ A TI Sbjct: 31 ANIKRIREQKGLGVNELSRISGVNASYISALERGEKQ----NPTITILKKLANALEVTID 86 Query: 71 QLLDLPFSDGRT 82 +L+ + Sbjct: 87 ELMKSEPINYDK 98 >gi|330808460|ref|YP_004352922.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376568|gb|AEA67918.1| Putative transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 104 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + AI R + LT + L K G DP + ++ + PS E++F + Sbjct: 6 LGPAIRRYRKVAGLTQAELGEKTGFDPKTISRFETGTYT-----PSVEALFLLANVL 57 >gi|319945875|ref|ZP_08020125.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747940|gb|EFW00184.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 116 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ +LT +A K G+ ++ +R + P+ +++ KI N +I Sbjct: 5 ERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKK-----PTQDNLVKIAQVLNVSID 59 Query: 71 QLLDLPFSD 79 L+D Sbjct: 60 YLVDNSDEH 68 >gi|319796436|ref|YP_004158076.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] gi|315598899|gb|ADU39965.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 102 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 10/70 (14%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + +++ + L+ LA +AGL + + + I+ P ++ + Sbjct: 1 MLQLTEE-----LEKARKAGGLSQEALATQAGLSRMTVQRIESGQID-----PRLSTLLE 50 Query: 61 ILAATNETIC 70 + + Sbjct: 51 MARVLGLELM 60 >gi|313114358|ref|ZP_07799890.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623313|gb|EFQ06736.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 113 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 5/92 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I++ + LA +GL ++ + +R ++ P+ SI KI Sbjct: 9 DILGRIEQERLSRGWSEYALAENSGLTQSTISTWRRRNLQ-----PNVASIEKICTGFGI 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 T+ Q T E+ E P Sbjct: 64 TLSQFFQEEEPVYLTNEQNELLDLWAKLSPVQ 95 >gi|294850380|ref|ZP_06791112.1| conserved hypothetical protein [Staphylococcus aureus A9754] gi|294822723|gb|EFG39160.1| conserved hypothetical protein [Staphylococcus aureus A9754] Length = 197 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I +R N+T +A G+ + NK + P + I + + Sbjct: 3 IGDVIREYRKRKNMTQEQMANYLGVTAPAVNKWENGNS-----LPDITLLAPIARLLDIS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + LL + K F Sbjct: 58 LDTLLSFHETLSNEEINKIITELDFKLREETYDEAFHYAKLNI 100 >gi|317152201|ref|YP_004120249.1| helix-turn-helix domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942452|gb|ADU61503.1| helix-turn-helix domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 108 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + ++ L+ S LA AGL+ + +R S +++ +I AA Sbjct: 7 KLGKRIRELRKKKELSQSRLAEMAGLNDKYLGEVERGSNN-----ISVKNLGQIAAALGV 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 +LLD + +++ + S Sbjct: 62 ETYELLDGAHEYEIDRKDITQKLHAIIEAASDE 94 >gi|260663657|ref|ZP_05864546.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260551883|gb|EEX24998.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 115 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + NL+ + L + G+ T+ + E PS+ + K+ + Sbjct: 14 IGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTE-----PSSTYVTKLAELFEVS 68 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 LLD S + + + Sbjct: 69 TDYLLDHERSIRQPVTVDLADENV 92 >gi|256111164|ref|ZP_05452200.1| hypothetical protein Bmelb3E_01001 [Brucella melitensis bv. 3 str. Ether] gi|265992675|ref|ZP_06105232.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262763545|gb|EEZ09577.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] Length = 182 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|226307935|ref|YP_002767895.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187052|dbj|BAH35156.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 196 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 37/146 (25%), Gaps = 6/146 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + R LT GLA + GL + +K +R PS KI + + Sbjct: 3 AFLRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGIST-----PSIAVALKIARVLDADVG 57 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 QL T + K+ + S + G V Sbjct: 58 QLFSDSMEGNAMTIVRAKDRVIDPASSVQSSVYDPIAPSMVGKAMQPFVVHPASVMGPKF 117 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDI 156 ++ S+ + Sbjct: 118 MDHTGEEFVF-VHSGSVEFEIPGQTM 142 >gi|153212378|ref|ZP_01948160.1| protein UmuD [Vibrio cholerae 1587] gi|124116586|gb|EAY35406.1| protein UmuD [Vibrio cholerae 1587] Length = 135 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + K SM + GD+LI++ ++ D ++ G+ V Sbjct: 26 SIDLDGLLIQHPSATFIGKASGDSMQGVGIFDGDLLIVDRHLEAMNHDVIVANFN-GEFV 84 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE 208 K+L RR L+S N + Sbjct: 85 CKILDIRRR---LLLSANEKMQPVAIH 108 >gi|124002882|ref|ZP_01687733.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] gi|123991532|gb|EAY30940.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] Length = 115 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ + + ++ + H T +A K G S+ + + + + SI +I T Sbjct: 4 KELLKIVKQLRKSHGFTQQQMATKLGWGKQSYERLENGRTQAFDLD-EITSIAQIFQLTA 62 Query: 67 ETICQLLDLPFS 78 + + Sbjct: 63 TEMMEYHAPHGQ 74 >gi|77456432|ref|YP_345937.1| XRE family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77380435|gb|ABA71948.1| putative regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 82 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 18/39 (46%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 +++ E I + + L+ LA++ G+ + + + Sbjct: 2 EQLGELIRTLRKAQKLSQQALAQRYGMSRATISGIENNT 40 >gi|90425003|ref|YP_533373.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107017|gb|ABD89054.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 471 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + + R+ E H LT + LA K G+ + N+ + Sbjct: 6 LGVRLKRLREEHRLTQAALAAKLGISLSYLNQLENNQRP 44 >gi|118579549|ref|YP_900799.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502259|gb|ABK98741.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 189 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 7/67 (10%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + +++ E I++ L + GL + ++ KR E P+ ++ K Sbjct: 10 TPERLVEYINKAIAEKG--QKALEIEVGLSTSMISRYKRGIGE-----PTASTLQKFADY 62 Query: 65 TNETICQ 71 ++ + Sbjct: 63 FGVSVWE 69 >gi|269138974|ref|YP_003295675.1| hypothetical protein ETAE_1623 [Edwardsiella tarda EIB202] gi|294636493|ref|ZP_06714863.1| toxin-antitoxin system, antitoxin component, Xre family [Edwardsiella tarda ATCC 23685] gi|267984635|gb|ACY84464.1| hypothetical protein ETAE_1623 [Edwardsiella tarda EIB202] gi|291090256|gb|EFE22817.1| toxin-antitoxin system, antitoxin component, Xre family [Edwardsiella tarda ATCC 23685] Length = 102 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + LT + +A + G PT+ + + G++ PS ++ K AT Sbjct: 44 AARKNAGLTQAQVAERMGTKPTAITRMESNLASGQS-GPSFATLKKFAHATG 94 >gi|238025551|ref|YP_002909783.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237880216|gb|ACR32548.1| Transcriptional regulator, XRE family protein [Burkholderia glumae BGR1] Length = 191 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 13/151 (8%) Query: 1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M SFS + I + + +R LT +A AG+ ++ +R PS Sbjct: 1 MASFSDESTSAAAAIGARMRALRQRLKLTLDEVAAAAGISKPFLSQVERGRAT-----PS 55 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 S+ I A T+ ++ P ++ + F S + + + Sbjct: 56 LASLAGIARALGVTMQYFVEAPSE--AKAVRRADTLQFFSFADSANSFARMTNPGSSRQL 113 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 + R P + + + + + + Sbjct: 114 DAVLVRLPAREPGSPMPSDAGEQFLYVVRGE 144 >gi|256423924|ref|YP_003124577.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038832|gb|ACU62376.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 82 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + ID + ER ++ LA G + +K R + E+I KI A Sbjct: 25 DVVDRIDAIPERKGMSHRELAEALGKSESEISKWMRGT-----HNFTFETIAKINLALG 78 >gi|228940374|ref|ZP_04102945.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973291|ref|ZP_04133880.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979854|ref|ZP_04140175.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228779869|gb|EEM28115.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228786487|gb|EEM34477.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819500|gb|EEM65554.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941011|gb|AEA16907.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 374 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 19/201 (9%), Positives = 56/201 (27%), Gaps = 14/201 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + +T LA G+ S +K + +P + + + N + Sbjct: 6 IHKIIANKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I +L+ + K F ++ + Sbjct: 61 IDELISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECRGIIKKYYSCFPL------LI 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 I + + + + + + + + L+ + + ++++R Sbjct: 115 QIGILFINHHMLTEDTDRGI-EILEEAMNLFSRVQEESDDVSLVKEAASFQATCYLILNR 173 Query: 189 RGRSIDLMSLN--CCYPVDTV 207 + L+ +P + + Sbjct: 174 PNEVLQLLGETIRPNFPEEDL 194 >gi|229170504|ref|ZP_04298155.1| transcriptional regulator, XRE [Bacillus cereus AH621] gi|228612974|gb|EEK70148.1| transcriptional regulator, XRE [Bacillus cereus AH621] Length = 108 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T LA L ++ +R R P ++ +I N + Sbjct: 5 GNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58 >gi|257053436|ref|YP_003131269.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256692199|gb|ACV12536.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 72 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I E NLT + LA G+ + ++ PS E ++I + + ++ Sbjct: 7 IKERREDANLTQAELAEAVGVTRQTILYVEKGEYN-----PSLELAWRIAREFDTHVEEV 61 Query: 73 LDLPFSDGRTT 83 DLP + Sbjct: 62 FDLPETTHEPE 72 >gi|209517499|ref|ZP_03266339.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209502032|gb|EEA02048.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 235 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 40/150 (26%), Gaps = 6/150 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 34 VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 88 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L ++G E+ ++ S Sbjct: 89 VAAFLRRHATNGFEHLPAERSARVVSANGRYSARPLYPDDESI-AAEFHELRIAPLHTEA 147 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 GI D ++ L+ Sbjct: 148 GIRRAPGTTVNLVVSDGTLEVSVHDQRQLL 177 >gi|196043612|ref|ZP_03110850.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225864505|ref|YP_002749883.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184749|ref|ZP_04311948.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] gi|196025921|gb|EDX64590.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225786797|gb|ACO27014.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228598763|gb|EEK56384.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] Length = 66 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I T LA++ G+ + ++ PS FKI ++I Sbjct: 4 NRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFKIANVFEKSIT 58 Query: 71 QLLDLPF 77 + D Sbjct: 59 DVFDYQE 65 >gi|149924579|ref|ZP_01912935.1| hypothetical protein PPSIR1_32734 [Plesiocystis pacifica SIR-1] gi|149814545|gb|EDM74129.1| hypothetical protein PPSIR1_32734 [Plesiocystis pacifica SIR-1] Length = 159 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 4/111 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I E+ +T A AG+ ++ + GR + P ++ +I Sbjct: 53 LGQRIRSAREQRGMTQKQAALAAGIATDMISRLEN----GRYQSPGLRTLLRIAEGLGIA 108 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + +LL + R + + L + + Sbjct: 109 LSELLPDTNLEQRASPVELSHRARLIALAHRAEPRDLELIVDIAATIVNRP 159 >gi|146297213|ref|YP_001180984.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410789|gb|ABP67793.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 145 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 9/84 (10%) Query: 3 SFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 +I + I + E L + LA+K + T+ + + + P E++ Sbjct: 1 MLPEHEILKYLGLQIRVLREWAGLKQTELAKKLHISQTTLARYENGELR-----PPIETL 55 Query: 59 FKILAATNETICQLLDLPFSDGRT 82 +I + +I LL S Sbjct: 56 LRIADFFDVSIDALLGRKNSHKDP 79 >gi|260575082|ref|ZP_05843083.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259022704|gb|EEW25999.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 207 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + T A KAGL ++ +K + + P+ E++ K+ Sbjct: 26 NLGARVRELRKGRGWTLEQAAVKAGLARSTLSKIENGQM-----SPTYEAVKKLAEGLAI 80 Query: 68 TICQLLDLPF 77 T+ QL P Sbjct: 81 TVPQLFTPPS 90 >gi|182414108|ref|YP_001819174.1| XRE family transcriptional regulator [Opitutus terrae PB90-1] gi|177841322|gb|ACB75574.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1] Length = 96 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + R+ E+ LT LA +AG+D + + G ++I K+ A Sbjct: 14 EILRKNLKRLREKQRLTQQDLAERAGIDYKYAQRIEAGHWPG----LQLKTIEKLAEALG 69 Query: 67 ETIC 70 Sbjct: 70 VPAW 73 >gi|171778435|ref|ZP_02919593.1| hypothetical protein STRINF_00444 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282836|gb|EDT48260.1| hypothetical protein STRINF_00444 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 183 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 5/85 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + +++ ++ A + + + + +P E + KI ++ Q Sbjct: 5 NISELRKQYQMSQDDFANIFHVSRQTVSNWENGKS-----YPDVEMLVKISDYFGISVDQ 59 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFP 96 L+ +++ Sbjct: 60 LIKKETIPSVAKNSDKQKKLWPMLA 84 >gi|146313711|ref|YP_001178785.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145320587|gb|ABP62734.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 182 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 13/137 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +++ R R L+ + +AR+AG+ ++ ++ + PS E+++ + A Sbjct: 8 IAKSLVRERTRTGLSLAEIARRAGIAKSTLSQLESGNGN-----PSLETLWSLCVALGIP 62 Query: 69 ICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +LL+ + + + G D + + + Sbjct: 63 FARLLEPQQPTTQVIRRGEGTKVTAEHAHYQAILLAACPPGARRDVYMLMAQPGADRISQ 122 Query: 121 PEIRSPHNGIYAIQTQD 137 P I Q + Sbjct: 123 PHPPGSVEHIIVTQGRA 139 >gi|126699831|ref|YP_001088728.1| putative regulatory protein [Clostridium difficile 630] gi|254975814|ref|ZP_05272286.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255093200|ref|ZP_05322678.1| putative regulatory protein [Clostridium difficile CIP 107932] gi|255101354|ref|ZP_05330331.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255307230|ref|ZP_05351401.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|255314943|ref|ZP_05356526.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255517617|ref|ZP_05385293.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255650728|ref|ZP_05397630.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|255656203|ref|ZP_05401612.1| putative regulatory protein [Clostridium difficile QCD-23m63] gi|260683814|ref|YP_003215099.1| putative regulatory protein [Clostridium difficile CD196] gi|260687474|ref|YP_003218608.1| putative regulatory protein [Clostridium difficile R20291] gi|296450363|ref|ZP_06892120.1| probable regulatory protein [Clostridium difficile NAP08] gi|296878775|ref|ZP_06902776.1| probable regulatory protein [Clostridium difficile NAP07] gi|306520643|ref|ZP_07406990.1| putative regulatory protein [Clostridium difficile QCD-32g58] gi|115251268|emb|CAJ69099.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209977|emb|CBA63985.1| putative regulatory protein [Clostridium difficile CD196] gi|260213491|emb|CBE05194.1| putative regulatory protein [Clostridium difficile R20291] gi|296260773|gb|EFH07611.1| probable regulatory protein [Clostridium difficile NAP08] gi|296430203|gb|EFH16049.1| probable regulatory protein [Clostridium difficile NAP07] Length = 112 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K I + I + + LA KAGL PT + +R S I KI A Sbjct: 6 KIIGDRIKVYRTKLGYSQEFLAEKAGLHPTYIGQIERAETNT-----SINIIMKIATAL 59 >gi|325912400|ref|ZP_08174795.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|325475742|gb|EGC78913.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 109 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ NLT LA K+GL + + R PS E + KI + I Sbjct: 4 GKKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISETFDCDI 58 Query: 70 CQLLDLPFSDGRTTEK 85 L++ + Sbjct: 59 SALINHEPNSIFEIMH 74 >gi|322374209|ref|ZP_08048742.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150] gi|321276914|gb|EFX53986.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150] Length = 69 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 5/72 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E + +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIETNLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYN-----PSLEMALKIA 55 Query: 63 AATNETICQLLD 74 N+ + +L Sbjct: 56 QVFNKQVEELFH 67 >gi|313885500|ref|ZP_07819250.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619230|gb|EFR30669.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 327 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 27/81 (33%), Gaps = 5/81 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +++ + A G+ S +K + G P + ++ + + Sbjct: 3 LADKIIELRKKNGWSQEEFAEMLGVSRQSVSKWE-----GAQSTPELNRLIQMSKIFSVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKE 89 LL + + + Sbjct: 58 TDYLLKDDVENLDPEQADLEW 78 >gi|312888747|ref|ZP_07748311.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311298747|gb|EFQ75852.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 101 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KI I LT LA K G + +K + E R ++ KI+ Sbjct: 38 KIGAMIHEARLEKGLTQEELAEKVGTTKSYISKIENNIKEVR-----FSTLKKIVE 88 >gi|297201607|ref|ZP_06919004.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|297147931|gb|EDY55056.2| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 202 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ R R L+ S LA++AG+ ++ ++ + G PS E+++ + A Sbjct: 28 IAASLRRERTRAGLSLSELAKRAGIAKSTLSQLEAAGGN-----PSVETLWALGVALGVP 82 Query: 69 I 69 Sbjct: 83 F 83 >gi|295106009|emb|CBL03552.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 153 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 11/153 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E++ RM NLT +AR+ + + ++ + E P + I A + Sbjct: 3 IGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETE-----PGVDMCKLIAATFDMP 57 Query: 69 ICQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN---KWNTVGVPEI 123 + + + +E G F S + G + E Sbjct: 58 LMELLEMPDKDYCQSCGMPFYQEADHGSEAGGGRSRDFCSMCYENGAFVRDETMEELIEE 117 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 +PH ++D ++LP ++ + Sbjct: 118 AAPHMAAACRISRDEAVSFMG-ALLPHLKRWEQ 149 >gi|255524575|ref|ZP_05391529.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185777|ref|ZP_06854184.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255511728|gb|EET88014.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049605|gb|EFG89032.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 231 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 10/77 (12%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 FS K + + + LT L +K L S + + + PS + KI Sbjct: 1 MFSQK-----LKKYRKELGLTQKDLGKKLDLSKESIGQLETG-----LKEPSKALLEKIY 50 Query: 63 AATNETICQLLDLPFSD 79 + + + LD Sbjct: 51 KFSGKNMNWWLDKNEQF 67 >gi|229194113|ref|ZP_04320982.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228589370|gb|EEK47320.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876] Length = 108 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T LA+ L ++ +R R P ++ +I + Sbjct: 5 GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFKVS 58 >gi|229197431|ref|ZP_04324158.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] gi|228586055|gb|EEK44146.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] Length = 374 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 18/194 (9%), Positives = 51/194 (26%), Gaps = 14/194 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 N +I +L+ + K F ++ + Sbjct: 56 YFNISIDELICYTPQMEQEDIKDLYHRLAEAFSEKPFDEVMMECREIIKKYYSCFPL--- 112 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182 + + + + + L + D L+ + + Sbjct: 113 ---LLQMGLLFINHHMLTEDTDKRIEILEEAMYLFSRVQEE--SDDVSLVKEAVSFQATC 167 Query: 183 KVLISRRGRSIDLM 196 +++++ + L+ Sbjct: 168 YLILNKPNEVLQLL 181 >gi|221231799|ref|YP_002510951.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|220674259|emb|CAR68796.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGENKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 117 DLSDLIHTNIYLVETFDE 134 >gi|212634305|ref|YP_002310830.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212555789|gb|ACJ28243.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 328 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ ++ + LA K + S +K + P I + + Sbjct: 3 LADKIIRLRKQCGWSQEDLAEKMNVSRQSVSKWESANSI-----PDLNRIITLAEIFEVS 57 >gi|196251088|ref|ZP_03149768.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196209382|gb|EDY04161.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 46 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 15/38 (39%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + E I + L+ L+ K G+ ++ K + Sbjct: 3 LGEKIKKARTEAGLSQEQLSEKLGVSRSAVAKWESGKG 40 >gi|124514561|gb|EAY56074.1| ParB-like partition protein [Leptospirillum rubarum] Length = 313 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 13/182 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I AID + +R+ LT A+ G + ++ S E+ K L Sbjct: 127 EIARAIDEIVKRYGLTQETCAKALGKSRSYVSRHLSLL-------MSDETTMKALETGMI 179 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + L ++ + L P + + Sbjct: 180 RDPEAVTLMNRMESGVRQEFLDRALSTNTPITVRAVREELERTESPGRREFSGSFGAAEP 239 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 Y ++ + S P + + + D +++ + K+L Sbjct: 240 TLPYPVEES------RPPSSAPELSIDETREVGKSRPPEAKDPVVMIDLPLGVWKKLLGR 293 Query: 188 RR 189 Sbjct: 294 LG 295 >gi|58580009|ref|YP_199025.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622006|ref|YP_449378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713709|ref|ZP_02244916.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] gi|58424603|gb|AAW73640.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365946|dbj|BAE67104.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 66 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E + L + G+ + N + + PS F+I E+I Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 HVFLYED 64 >gi|332981641|ref|YP_004463082.1| signal peptidase I [Mahella australiensis 50-1 BON] gi|332699319|gb|AEE96260.1| signal peptidase I [Mahella australiensis 50-1 BON] Length = 194 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 140 HKTQDTSMLPLYRKGDILILN----SAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSI 193 + +SM+P GD+LI++ + GD ++ K + K +I+ G I Sbjct: 38 ITVEGSSMVPTLNDGDMLIVDKISYRFNEPQRGDIVIFKYPGDMKENFVKRIIALGGDEI 97 Query: 194 DLM 196 ++ Sbjct: 98 EVK 100 >gi|330685364|gb|EGG97023.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 67 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R + LA+KAG+ + + +R PS + KI N Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAMKIARIFN 53 >gi|313499627|gb|ADR60993.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 99 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 A+ R + LT + LA + G DP + ++ + PS ++I Sbjct: 4 ALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYT-----PSIDAIMAFAQVLGVKPKD 58 Query: 72 LLDLPF 77 P Sbjct: 59 FFAEPD 64 >gi|302520335|ref|ZP_07272677.1| DNA-binding protein [Streptomyces sp. SPB78] gi|302429230|gb|EFL01046.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 126 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + +A+ L+ S LA +AG+ ++ + G + P + + L Sbjct: 52 DLGQAVHDRRVELGLSQSELAERAGMTQPQVSRME--GGDTVPTLPLLRRLARALDGALN 109 Query: 68 TICQLLDLPFSDGRTT 83 D + Sbjct: 110 LAIDENDSHVTFTPHA 125 >gi|285018010|ref|YP_003375721.1| hypothetical protein XALc_1223 [Xanthomonas albilineans GPE PC73] gi|283473228|emb|CBA15733.1| hypothetical protein XALc_1223 [Xanthomonas albilineans] Length = 125 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I E I L+ + L+R G++ + + Sbjct: 68 IAERIRLARNDRGLSQTELSRLLGVNRATVGHWESGES 105 >gi|256396335|ref|YP_003117899.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362561|gb|ACU76058.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 470 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 M ++ A + R E LT A +AG++ ++ + + Sbjct: 1 MAKPRQSRLRRAGLARAREAAGLTQEAFATRAGVEVSTVVRWESGCTTPLP 51 >gi|225375548|ref|ZP_03752769.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] gi|225212527|gb|EEG94881.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] Length = 145 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + ++++ LA + G+ + +K + P E ++ T+ Sbjct: 10 ENLIQLRKLNHMSQDELADQIGVSRQTLSKYETGES-----LPDIERCKRLADVFGVTVD 64 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 L++ D E K + G G Sbjct: 65 DLINYEKKDSLGLEVPPKGKHIFGMVKVGEKGQI 98 >gi|222530426|ref|YP_002574308.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457273|gb|ACM61535.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 122 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI + + ++ LT +A G++ + + R S E++ ++ Sbjct: 8 KKIGQKLQEARKKAGLTQEQVADYLGVNKVQLSYYENGA-----REISIETLQQLADLYG 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 T+ LD S + L Sbjct: 63 YTLNYFLDDEKSTDPAVSFSFRGEELE 89 >gi|126669133|ref|ZP_01740061.1| hypothetical protein MELB17_05544 [Marinobacter sp. ELB17] gi|126626403|gb|EAZ97072.1| hypothetical protein MELB17_05544 [Marinobacter sp. ELB17] Length = 96 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 13 IDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ID++ + LT LA+K G ++ ++ +R PS ++ K AA Sbjct: 30 IDQLITMRTKAGLTQEDLAKKLGTSKSNISRLERGRGN-----PSWGTLSKYAAACGF 82 >gi|18310949|ref|NP_562883.1| DNA-binding protein [Clostridium perfringens str. 13] gi|110801118|ref|YP_696646.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|168204849|ref|ZP_02630854.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168208668|ref|ZP_02634293.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168212998|ref|ZP_02638623.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|168215593|ref|ZP_02641218.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|169343522|ref|ZP_02864521.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|182624367|ref|ZP_02952151.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|18145631|dbj|BAB81673.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675765|gb|ABG84752.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|169298082|gb|EDS80172.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170663587|gb|EDT16270.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170713177|gb|EDT25359.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170715478|gb|EDT27660.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|177910370|gb|EDT72747.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182382433|gb|EDT79912.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 179 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I R+ LT LA + L ++ + PS ++ IL Sbjct: 2 EIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLIDILDILGT 56 Query: 68 TICQLL 73 + + Sbjct: 57 NLTEFF 62 >gi|296110774|ref|YP_003621155.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832305|gb|ADG40186.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 171 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 6/138 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + N+T S LA K + + + + P +++ I ++ +L Sbjct: 7 IKTKRQELNITQSELAEKLFVSNKTISNWETGKT-----MPDLDNVLYIAKILRISLDKL 61 Query: 73 LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L +E + +F T + + + VP + G + Sbjct: 62 LLEDNHMIDHVKHIQEIRATRKMTWVASITNIIFFLMFSTQSFFGQLPVPFLVMMLIGAW 121 Query: 132 AIQTQDTRHKTQDTSMLP 149 A ++ S+ Sbjct: 122 ANIWVLFHFLSKTDSLED 139 >gi|297564958|ref|YP_003683930.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849407|gb|ADH62422.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 84 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I ++ ++ L+ LA +AG+ + K +R G R PS K+ Sbjct: 7 IRQLRKQAGLSQEALAVEAGITVSLLTKYER----GEVRRPSLVCSRKLAKVL 55 >gi|210630657|ref|ZP_03296539.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] gi|210160390|gb|EEA91361.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] Length = 152 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + R L LA AG+ ++ + R + ++I + L ++ Sbjct: 15 GSRIRELRTRRGLLQRELAEMAGVTESAVRNYELGLRTPRPQH--LKAIARALEVDPASL 72 Query: 70 CQL 72 Sbjct: 73 VDY 75 >gi|192361034|ref|YP_001984168.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190687199|gb|ACE84877.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] Length = 72 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K+ + + ++ +T LA + G+ S + +R PS +++ K+ Sbjct: 5 KQFGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIY-----GPSFDTLEKLA 55 >gi|150018438|ref|YP_001310692.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904903|gb|ABR35736.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 5/103 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + L+ LA G+ S K + +P + + +I Sbjct: 5 EQLQTLRKAKGLSQEKLAEFLGISRQSVAKWEVGQS-----YPDIARLIALSEFFKVSID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +L++ + R + ++ K + + G Sbjct: 60 KLVNDYEENCRLSIEENKVNNINRNIIDFLCRAKKATYAGNGG 102 >gi|126175739|ref|YP_001051888.1| XRE family transcriptional regulator [Shewanella baltica OS155] gi|125998944|gb|ABN63019.1| putative transcriptional regulator, XRE family [Shewanella baltica OS155] Length = 81 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + A+ +M + L+ LA +A +D + + +R + + ++K Sbjct: 1 MKTLA-TEFGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEAN-----ITLDMLYK 54 Query: 61 ILAATNETICQ 71 I + + Sbjct: 55 IAEVLDCEPHE 65 >gi|113476347|ref|YP_722408.1| XRE family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110167395|gb|ABG51935.1| transcriptional regulator, XRE family [Trichodesmium erythraeum IMS101] Length = 113 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 3/101 (2%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + + LA+ G+D T +K + + P E I + N +L Sbjct: 9 IRKVRKDKGYSQRELAKHLGVDFTYLSKLENDRADY---APKEEVIRGLAKNLNLNPEEL 65 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + L + E+ K+ P + Sbjct: 66 IFLAGRIPQQYEEVLKQNPREMQVLFQRMKENPEFAYEISQ 106 >gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 182 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 5/95 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I LT L+ K GL + ++ +R P+ S+ KI Sbjct: 1 MTESDLARQIRVSRTNAGLTLKELSEKTGLSVSFISQVERGTS-----SPAISSLKKIAD 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 N I + T+ E+ + P+ Sbjct: 56 GLNVPITSFFTPEQNTTYTSVASEQRSFRIDDSPA 90 >gi|295108102|emb|CBL22055.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 174 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 13/140 (9%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S++ I +A+ ++ + + L+ A G+ + ++ + P+ ++ I Sbjct: 39 SNQNIAKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSV-----PNINTLILISEK 93 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + ++L + + K + ++ Sbjct: 94 FDIPVDEMLKSGYVVEKIDNNKTSFKKDRNYSIVFLTIGIL--------GLISIPFEMSA 145 Query: 125 SPHNGIYAIQTQDTRHKTQD 144 HN Sbjct: 146 DDHNCTSHFGVDAFCLALHG 165 >gi|242399175|ref|YP_002994599.1| Putative HTH-type transcriptional regulatory protein TK0539 [Thermococcus sibiricus MM 739] gi|242265568|gb|ACS90250.1| Putative HTH-type transcriptional regulatory protein TK0539 [Thermococcus sibiricus MM 739] Length = 319 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 40/162 (24%), Gaps = 6/162 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATNET 68 + + + E H + LA G+ S ++ E +F A Sbjct: 129 GKYLRELRESHGYSVGELAELLGVSRKSLQNYEKGEQAMSLEIALRLEELFDAPVAKPID 188 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I + + EKEI F ++ + + S Sbjct: 189 ILNSKVEAKMNVEPETELEKEIFNRLETFGMRVVKIKKAPFDAISREEGLKILTGISERR 248 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 ++ ++ + + IL G+ Sbjct: 249 TTSTLKRAQMVNEVS-----KIIHSDGLFILKKTKTEVVGEI 285 >gi|227514760|ref|ZP_03944809.1| bacteriophage transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086869|gb|EEI22181.1| bacteriophage transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 115 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + NL+ + L + G+ T+ + E PS+ + K+ + Sbjct: 14 IGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTE-----PSSTYVTKLAELFEVS 68 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 LLD S + + + Sbjct: 69 TDYLLDHERSIRQPVTVDLADENV 92 >gi|261407406|ref|YP_003243647.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283869|gb|ACX65840.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 201 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 36/192 (18%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E+ L+ +A G+ T + +R PS +++KI + Sbjct: 24 LANNLKILREQRKLSLDKVAEMTGISKTMLGQIERGES-----SPSITTVWKIANGLKLS 78 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L++ P S ++E + + + + R Sbjct: 79 FSSLINEPHSGTVVVSREEVQALVEDNGRIR--------------IYPYFPYEDGRRFEM 124 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 ++ S + I V G+ + + + K Sbjct: 125 YSLEMEHGGYL------SAEAHIEGTEEFI-----TVFDGEVTI-RVDHEEYTVKQ---- 168 Query: 189 RGRSIDLMSLNC 200 G SI + Sbjct: 169 -GESIRFKADKP 179 >gi|160935724|ref|ZP_02083099.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC BAA-613] gi|158441468|gb|EDP19178.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC BAA-613] Length = 194 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 17/191 (8%), Positives = 35/191 (18%), Gaps = 22/191 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFKILAA 64 K+ I + +T LA + + +K +R R S I Sbjct: 5 KVGNLIYTLRTEKGMTQKALANAMNISDRTISKWERGAGCPDVSLLRELSDILGVNIEKI 64 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + R + + P Sbjct: 65 LLGDLEPNKKDGGNMKRIKFYVCPVCGNVISSTGMAEISCCGRKLNALKA-----RPADL 119 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-------------AIQVNCGDRL 171 S A++ D + + G + Sbjct: 120 SHSVSAKAVEGDYYITLEHDMEKQHYITFMAYAVYDRVLLMKLYPEQAAQVRFPRSGHGV 179 Query: 172 -LIKPRTGDIV 181 I + + Sbjct: 180 LYICCNSHGLF 190 >gi|157377494|ref|YP_001476094.1| transcriptional regulator protein-like protein [Shewanella sediminis HAW-EB3] gi|157319868|gb|ABV38966.1| transcriptional regulator protein-like protein [Shewanella sediminis HAW-EB3] Length = 78 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + N T + LA K + + N ++ + PS FK+ + Sbjct: 3 NRLKVLRAERNWTQADLAEKLDVSRQTINAIEKGKYD-----PSLPLAFKVARLFEAS 55 >gi|91785146|ref|YP_560352.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91689100|gb|ABE32300.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 229 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 6/150 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 32 VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L ++G E+ ++ S PT +++ + + + + Sbjct: 87 VAAFLRRHATNGFEHLPAERSSRVVSSNGRYSARPLYPDGEPTAAEFHELRIAPLHTEAG 146 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 A + ++ L+ Sbjct: 147 TRRA-PGTTVNLVVSEGTLEVSVHDQRQLL 175 >gi|71910944|ref|YP_282494.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|71853726|gb|AAZ51749.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS5005] Length = 73 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 7/77 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + R + + +A+ AG+ + + +R PS K Sbjct: 1 MAM--EVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAMK 53 Query: 61 ILAATNETICQLLDLPF 77 I E + ++ L Sbjct: 54 IAKVFQEPVEEVFRLVE 70 >gi|322516069|ref|ZP_08069006.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322125484|gb|EFX96830.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 233 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 9/100 (9%), Positives = 34/100 (34%), Gaps = 2/100 (2%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ + N+T S LA+K + + ++ ++ + + + + + + Sbjct: 27 MSKLRKLRKAKNMTQSELAKKIKVSEKTISRWEKDKTLMKAN--KAKELADLFGVSVGYL 84 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 +D + ++ +L + +F Sbjct: 85 LGYIDDSEIYDDEVVIEPEKGMILAYSLERFNKKHQEKMF 124 >gi|310825864|ref|YP_003958221.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308737598|gb|ADO35258.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 112 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 5/85 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M HK I I + N++ LARK G+ PT + + S +S+ + Sbjct: 1 MEELDHKAIGLRIRKQRTFLNMSRDELARKIGITPTFLADIELGT-----KGFSLKSLNR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEK 85 + +L P T Sbjct: 56 FSNVLKMSADAILYGPKEYMGTKYA 80 >gi|307265009|ref|ZP_07546570.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919994|gb|EFN50207.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 74 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++ ++ LT + +A+K G+ TS+ + PS KI Sbjct: 4 YLKKIRKQAGLTQAEIAKKVGIARTSYTNIELGIKN-----PSFNVATKIKKVLGVNNDD 58 Query: 72 LL 73 + Sbjct: 59 IF 60 >gi|291523917|emb|CBK89504.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528619|emb|CBK94205.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 213 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + +T +A G+ + + + +P S+ K+ Sbjct: 4 DIGSKIKAARLKKKMTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSDYYEA 58 Query: 68 T 68 + Sbjct: 59 S 59 >gi|282933144|ref|ZP_06338531.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus jensenii 208-1] gi|281302648|gb|EFA94863.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus jensenii 208-1] Length = 108 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 7/98 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +E I + + H + LA K+G+ + +++ PST S+ K+ + N ++ Sbjct: 4 FEKIKKYCKEHGTSIQELAEKSGISAGTIYNW-------KHKTPSTTSLEKMASVMNVSV 56 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 L L ++ Sbjct: 57 SSLFTDADESSNNEVDLNNNANLYFYDGKPIPKEDMDY 94 >gi|260664300|ref|ZP_05865153.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] gi|260562186|gb|EEX28155.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] Length = 88 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + ++ + LA++ GL + ++ P+ E++ K Sbjct: 25 LSFLQVQRLKSGISQTELAKRTGLTQPQIARIEKLDST-----PTLETLNKYAKGLG 76 >gi|256851406|ref|ZP_05556795.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260660827|ref|ZP_05861742.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|256616468|gb|EEU21656.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260548549|gb|EEX24524.1| predicted protein [Lactobacillus jensenii 115-3-CHN] Length = 117 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 7/98 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +E I + + H + LA K+G+ + +++ PST S+ K+ + N ++ Sbjct: 13 FEKIKKYCKEHGTSIQELAEKSGISAGTIYNW-------KHKTPSTTSLEKMASVMNVSV 65 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 L L ++ Sbjct: 66 SSLFTDADESSNNEVDLNNNANLYFYDGKPIPKEDMDY 103 >gi|256852139|ref|ZP_05557526.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260661292|ref|ZP_05862205.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282932144|ref|ZP_06337598.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297204982|ref|ZP_06922378.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] gi|256615551|gb|EEU20741.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260547747|gb|EEX23724.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281303737|gb|EFA95885.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297149560|gb|EFH29857.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] Length = 138 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 2/112 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E + M ++ LA K + S +K + + + + ++ + Sbjct: 2 DQINERLKEMRLNAGMSQEELASKLNVSRQSVSKWE--TGDSLPDILKLKQLSQLYDVSI 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + I + + K+ + + G + + + Sbjct: 60 DYIVGNKNFDKKEETQETSKQNLLKKQRAKRALKGILWGTASMLAAFGMEVL 111 >gi|213051669|ref|ZP_03344547.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 176 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 21/204 (10%), Positives = 49/204 (24%), Gaps = 40/204 (19%) Query: 18 ERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 E + T L G+ ++ + R E + + T ++ L Sbjct: 3 EAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSLNWLTTG 55 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 S + E+ G + + Sbjct: 56 HGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPSTFKKP- 100 Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 + + + G ++ G++ + + G I + Sbjct: 101 -----FVITDNNSEFICDKEF------DDIRDGKWVISID--GEVTIRDITRLPGGRIFV 147 Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219 N + ++ DIE I +I+ Sbjct: 148 EGGNRAF---ECKIEDIEIIGKII 168 >gi|213022221|ref|ZP_03336668.1| repressor protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 175 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 21/204 (10%), Positives = 49/204 (24%), Gaps = 40/204 (19%) Query: 18 ERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 E + T L G+ ++ + R E + + T ++ L Sbjct: 2 EAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSLNWLTTG 54 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 S + E+ G + + Sbjct: 55 HGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPSTFKKP- 99 Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 + + + G ++ G++ + + G I + Sbjct: 100 -----FVITDNNSEFICDKEF------DDIRDGKWVISID--GEVTIRDITRLPGGRIFV 146 Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219 N + ++ DIE I +I+ Sbjct: 147 EGGNRAF---ECKIEDIEIIGKII 167 >gi|196037154|ref|ZP_03104469.1| transcriptional regulator [Bacillus cereus W] gi|195990258|gb|EDX54311.1| transcriptional regulator [Bacillus cereus W] Length = 116 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E I + + + +T L G+ + + ++ + P ES+ KI N Sbjct: 2 IGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKG-----KKSPGRESLEKIADYFN 54 >gi|153853834|ref|ZP_01995190.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] gi|149753584|gb|EDM63515.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] Length = 377 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I ++ + ++T LA K G+ S +K + P E + + + Sbjct: 3 LGEKIYKLRTKRSMTQEQLAEKIGVSRQSVSKWETDSAI-----PDIEKLKLLAEIFEVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 I +LL + + + +++ I Sbjct: 58 ITELLGMECEEDTKRKDEKERIEH 81 >gi|294629300|ref|ZP_06707860.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292832633|gb|EFF90982.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 406 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 4/121 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + ER LT + LA G+ P + K + G+ + P + + +I A Sbjct: 7 GQRVQILRERRGLTQAQLADFVGISPHTMRKIEN----GQQKAPGLDMVLRIAEALRVRD 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L L + V P + + Sbjct: 63 LADLTGRPEAHVDLFVGPGHPRLAAVKAAVDSFELAHAVEPPRVGHLEARLHAAWRARHQ 122 Query: 130 I 130 Sbjct: 123 A 123 >gi|266625424|ref|ZP_06118359.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288862669|gb|EFC94967.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 232 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KKI E + + + LT LA + + ++ + P + ++ + Sbjct: 4 KKIGEFLKVLRKEKGLTQEQLAESLLVSGRTVSRWETGMN-----MPDLSVLIQMAEFYD 58 Query: 67 ETICQ 71 + + Sbjct: 59 VEVKE 63 >gi|255690854|ref|ZP_05414529.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|260623486|gb|EEX46357.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] Length = 132 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 9/114 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + + I+R+ +T + L G+ + +K ++ E + KI +A Sbjct: 11 HLHLGKKIERVRRLRGMTQTELGELLGITKQAVSKMEQTEK------IDDERLEKIASAL 64 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 T L + E + + F FP Sbjct: 65 GVTTDGLKEYNEETVLYNTNNFYENCGVKNAIGNNQTF---NNFPIEQTIELFE 115 >gi|298530403|ref|ZP_07017805.1| transcriptional regulator, XRE family [Desulfonatronospira thiodismutans ASO3-1] gi|298509777|gb|EFI33681.1| transcriptional regulator, XRE family [Desulfonatronospira thiodismutans ASO3-1] Length = 93 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + LT + LAR+ G+ + + PS +++ K AAT Sbjct: 34 LIEARTKAGLTQTELARRMGMKQAGIARLESG-----RHNPSMKTLQKYAAATGHE 84 >gi|146317667|ref|YP_001197379.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|145688473|gb|ABP88979.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] Length = 111 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K++ + I + NL+ LA K + + +K + P + + + Sbjct: 1 MIM---KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEAT-----PDIDKLVQ 52 Query: 61 ILAATNET 68 + + Sbjct: 53 LAEIFGVS 60 >gi|39653689|ref|NP_945254.1| transcriptional regulator [Streptococcus phage EJ-1] gi|38638857|emb|CAE82097.1| transcriptional regulator [Streptococcus phage EJ-1] Length = 58 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 W+ + +T LA KAG+ P + + S +++ KI A +I Sbjct: 2 WKKFKHLLIEKGMTQKALAEKAGISPNTIRTI-------KTERISFKNMCKIADALGISI 54 Query: 70 CQ 71 + Sbjct: 55 DE 56 >gi|75910930|ref|YP_325226.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704655|gb|ABA24331.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 82 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI + I + LT A G+ + N+ + + + + I +L Sbjct: 11 QPKIGQFIQEIRLVMGLTQEEFAVILGVTFPTVNRWENGHT--KPSKLAIQQIEALLDKL 68 Query: 66 NET 68 + Sbjct: 69 GKD 71 >gi|78062077|ref|YP_371985.1| transcriptional regulator [Burkholderia sp. 383] gi|77969962|gb|ABB11341.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia sp. 383] Length = 220 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 45/160 (28%), Gaps = 6/160 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + + + + +LT + ++ G+ +F++ + + P+ + +I+ Sbjct: 29 DQIGQRLRALRQSRDLTLNEASQLTGVPAATFSRIETNKM-----SPTFGVLHRIIEGMG 83 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVGVPEIRS 125 +L + E + + + G + V Sbjct: 84 FDWRDVLTNQPRHRNSLSVCHAEDIVTTRIANIPYEYALLHRDSSAGMITLRMQVDARTV 143 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 G A D + + G+ L + Sbjct: 144 DEAGGLAGHEGDEFCYVLSGELELHFEHGEPTRLRAGESA 183 >gi|11499990|ref|NP_071236.1| hypothetical protein AF2414 [Archaeoglobus fulgidus DSM 4304] gi|3183466|sp|O30257|Y2414_ARCFU RecName: Full=Uncharacterized HTH-type transcriptional regulator AF_2414 gi|2650680|gb|AAB91252.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 229 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + EA+ + N + S LARK G+ P+ + + R P T + K + A Sbjct: 18 ENSGEALRKWRSIFNASQSDLARKLGISPSVISDYESG-----RRKPGTAFLKKFVCAL 71 >gi|325970608|ref|YP_004246799.1| SOS-response transcriptional repressor, LexA [Spirochaeta sp. Buddy] gi|324025846|gb|ADY12605.1| SOS-response transcriptional repressor, LexA [Spirochaeta sp. Buddy] Length = 206 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 4/76 (5%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRG 190 + K + SM+ GDI I+ G+ + + I K Sbjct: 114 RNTYFALKVRGESMIDEGIFDGDIAIIKKCEVAETGEIIAATVGEDEPGITLKGYYP-SN 172 Query: 191 RSIDLMSLNCCYPVDT 206 I+L N Sbjct: 173 GYIELRPANASMGPII 188 >gi|313668496|ref|YP_004048780.1| DNA-binding protein [Neisseria lactamica ST-640] gi|313005958|emb|CBN87415.1| putative DNA-binding protein [Neisseria lactamica 020-06] Length = 110 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ + A+ + + LT + LA + L + ++ +R I + E + + Sbjct: 1 MKSPINQTVGRAMAKWRKVSGLTQAQLAERLNLSLDAVSRLERGNI-----ALTVERLVE 55 Query: 61 ILAATNETICQ 71 + Sbjct: 56 LAEIFGCETAD 66 >gi|307710039|ref|ZP_07646484.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619224|gb|EFN98355.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 58 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 W+ + +T LA KAG+ P + + S +++ KI A +I Sbjct: 2 WKKFKHLLIEKGMTQKALAEKAGISPNTIRNI-------KTERISFKNMCKIADALEVSI 54 Query: 70 CQ 71 + Sbjct: 55 DE 56 >gi|300925167|ref|ZP_07141076.1| helix-turn-helix protein [Escherichia coli MS 182-1] gi|300418685|gb|EFK01996.1| helix-turn-helix protein [Escherichia coli MS 182-1] Length = 182 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 26/129 (20%), Gaps = 9/129 (6%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +T LA + G+ R +R PS + I + Sbjct: 47 RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 101 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129 +P F G+ V + S Sbjct: 102 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 161 Query: 130 IYAIQTQDT 138 ++ Sbjct: 162 WLEVEGNSM 170 >gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] Length = 183 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 8/74 (10%) Query: 1 MT-SFSHKKI--WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 MT + +I + I R + +T LA + G+ S K + P + Sbjct: 1 MTEKMTEGRIRLGQEILRRRKAMGMTQEELASRMGVSRQSVAKWETGQS-----SPDIDR 55 Query: 58 IFKILAATNETICQ 71 + + ++ + Sbjct: 56 LSLLRDVLQTSLDE 69 >gi|307154063|ref|YP_003889447.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984291|gb|ADN16172.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 82 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 17/47 (36%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 K+ + I + + LT A G+ T+ N+ ++ Sbjct: 10 LEQPKVGQLIRALRQEMQLTQEQFAGMVGVVFTTVNRWEKGHANPSP 56 >gi|167841007|ref|ZP_02467691.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 194 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 9 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 63 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +L P + +IP L + + G + + Sbjct: 64 LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 118 >gi|153820180|ref|ZP_01972847.1| protein UmuD [Vibrio cholerae NCTC 8457] gi|126509273|gb|EAZ71867.1| protein UmuD [Vibrio cholerae NCTC 8457] Length = 135 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + K SM + GD+LI++ ++ D ++ G+ V Sbjct: 26 SIDLDGLLIQHPSATFIGKASGDSMQGVGIFDGDLLIVDRHLEAMNHDVIVANFN-GEFV 84 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE 208 K+L RR L+S N + Sbjct: 85 CKILDIRRR---LLLSANEKMQPVAIH 108 >gi|254251470|ref|ZP_04944788.1| hypothetical protein BDAG_00657 [Burkholderia dolosa AUO158] gi|124894079|gb|EAY67959.1| hypothetical protein BDAG_00657 [Burkholderia dolosa AUO158] Length = 259 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 14/170 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + KI AA + Sbjct: 67 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 121 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G ++ ++ S P +++ + + + + Sbjct: 122 VAAFLRRHAVNGFEHLAADRASRVVSSNGRFSSRALYPEGEPAAAEFHELRIAPLHTEPG 181 Query: 129 GIYAIQTQDTRHKTQDTSMLPL------YRKGDILILNSAIQV---NCGD 169 A T ++ T + + GD ++ ++ N GD Sbjct: 182 TPRAPGTTVNLVVSEGTLEISVHDRRQLLATGDAIVFDADQPYSLRNPGD 231 >gi|24379248|ref|NP_721203.1| hypothetical protein SMU.790 [Streptococcus mutans UA159] gi|24377163|gb|AAN58509.1|AE014920_7 conserved hypothetical protein [Streptococcus mutans UA159] Length = 79 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + + +T LA K + + +K +R +P SI K+ Sbjct: 4 QTLGMIISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLS-----FPDINSIPKLAEIFE 58 Query: 67 ETICQLLD 74 ++ L+ Sbjct: 59 VSVDDLMQ 66 >gi|14324400|dbj|BAB59328.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 196 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 6/91 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I E + +M + ++ LAR G+ + + ++ I P+ I Sbjct: 1 MRMEMMPNIDE-LRKMRKNLGISQKDLARVTGVSQSYIARLEKGTIN-----PTYSKIKA 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 I ++ + + + + + Sbjct: 55 IYEYLTKSSEKANTIALTCDKIMTRNVVVCR 85 >gi|15607615|ref|NP_214988.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839863|ref|NP_334900.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31791654|ref|NP_854147.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|121636390|ref|YP_976613.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660241|ref|YP_001281764.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148821673|ref|YP_001286427.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167970705|ref|ZP_02552982.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|215402227|ref|ZP_03414408.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215409992|ref|ZP_03418800.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215425701|ref|ZP_03423620.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215444577|ref|ZP_03431329.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218752108|ref|ZP_03530904.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219556293|ref|ZP_03535369.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224988862|ref|YP_002643549.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253797402|ref|YP_003030403.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254230822|ref|ZP_04924149.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C] gi|254363439|ref|ZP_04979485.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|254549422|ref|ZP_05139869.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185342|ref|ZP_05762816.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260199473|ref|ZP_05766964.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260203626|ref|ZP_05771117.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289441856|ref|ZP_06431600.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289446017|ref|ZP_06435761.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289552725|ref|ZP_06441935.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289568393|ref|ZP_06448620.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289573061|ref|ZP_06453288.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289744172|ref|ZP_06503550.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289748964|ref|ZP_06508342.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289756549|ref|ZP_06515927.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289760592|ref|ZP_06519970.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294995981|ref|ZP_06801672.1| transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|297632959|ref|ZP_06950739.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN 4207] gi|297729934|ref|ZP_06959052.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN R506] gi|298523952|ref|ZP_07011361.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis 94_M4241A] gi|306774572|ref|ZP_07412909.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306779320|ref|ZP_07417657.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306783110|ref|ZP_07421432.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306787478|ref|ZP_07425800.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792029|ref|ZP_07430331.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306796215|ref|ZP_07434517.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306802073|ref|ZP_07438741.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306806284|ref|ZP_07442952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306966480|ref|ZP_07479141.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306970676|ref|ZP_07483337.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307078400|ref|ZP_07487570.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307082959|ref|ZP_07492072.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657263|ref|ZP_07814143.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN V2475] gi|81669532|sp|O53759|Y474_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator Rv0474/MT0491 gi|2909550|emb|CAA17429.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13879998|gb|AAK44714.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis CDC1551] gi|31617240|emb|CAD93347.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] gi|121492037|emb|CAL70500.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599881|gb|EAY58891.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C] gi|134148953|gb|EBA40998.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148504393|gb|ABQ72202.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148720200|gb|ABR04825.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224771975|dbj|BAH24781.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253318905|gb|ACT23508.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289414775|gb|EFD12015.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289418975|gb|EFD16176.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289437357|gb|EFD19850.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289537492|gb|EFD42070.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289542146|gb|EFD45795.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289684700|gb|EFD52188.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289689551|gb|EFD56980.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289708098|gb|EFD72114.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289712113|gb|EFD76125.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298493746|gb|EFI29040.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis 94_M4241A] gi|308216919|gb|EFO76318.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308327764|gb|EFP16615.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308332127|gb|EFP20978.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308335853|gb|EFP24704.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339516|gb|EFP28367.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308343384|gb|EFP32235.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308347293|gb|EFP36144.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308351223|gb|EFP40074.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308355876|gb|EFP44727.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308359797|gb|EFP48648.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308363736|gb|EFP52587.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308367393|gb|EFP56244.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323721149|gb|EGB30211.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326902301|gb|EGE49234.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328457188|gb|AEB02611.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 140 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E +++ LA ++G+ ++ +R R PS + + +I A Sbjct: 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLSQIAKALRV 75 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L + + ++ + Sbjct: 76 SAEVLYVRAGILEPSETSQVRDAIITDTA 104 >gi|327463750|gb|EGF10066.1| transcriptional regulator [Streptococcus sanguinis SK1057] Length = 72 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|320102695|ref|YP_004178286.1| helix-turn-helix domain-containing protein [Isosphaera pallida ATCC 43644] gi|319749977|gb|ADV61737.1| helix-turn-helix domain protein [Isosphaera pallida ATCC 43644] Length = 222 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 6/65 (9%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ + + + N + ++ G+ + ++ +R P+ +F+I Sbjct: 42 ERLRQRVKTLRTERNWSLEEFSKACGVSRSMLSQIERGEAN-----PTLAVMFRIAQVFG 96 Query: 67 ETICQ 71 ++ + Sbjct: 97 MSLGE 101 >gi|317506633|ref|ZP_07964424.1| hypothetical protein HMPREF9336_00794 [Segniliparus rugosus ATCC BAA-974] gi|316255065|gb|EFV14344.1| hypothetical protein HMPREF9336_00794 [Segniliparus rugosus ATCC BAA-974] Length = 149 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + R+ ++ + + L R A + P + + EG P + + ++ AA ++ Sbjct: 12 HRLTRLRDKEGWSEAELGRLARVSPQAIRNWESGLTEG----PQVDKLARVAAALGASMA 67 Query: 71 Q 71 Sbjct: 68 D 68 >gi|226305059|ref|YP_002765017.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184174|dbj|BAH32278.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 470 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ L+ + LA+ + + N+ + R + + +I Sbjct: 6 VGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ + P Sbjct: 61 TTFFSPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVSTHP 102 >gi|182418649|ref|ZP_02949926.1| DNA-binding protein [Clostridium butyricum 5521] gi|237668530|ref|ZP_04528514.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377511|gb|EDT75065.1| DNA-binding protein [Clostridium butyricum 5521] gi|237656878|gb|EEP54434.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 179 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + LT LA + L ++ + PS ++ IL Sbjct: 2 QIGEKIRILRMEKQLTQEELANRCELSKGFISQVENDLT-----SPSIATLIDILEILGT 56 Query: 68 TICQLL 73 + Sbjct: 57 NLPDFF 62 >gi|154500021|ref|ZP_02038059.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] gi|150271619|gb|EDM98876.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] Length = 296 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++ +A K + + +K + P + + ++ N + Sbjct: 4 IDKNIKHFRKAKGMSQEEMAVKLNVVRQTVSKWENGLSV-----PDADVLIRMAELLNVS 58 Query: 69 ICQ 71 + Q Sbjct: 59 VSQ 61 >gi|295104256|emb|CBL01800.1| Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3] Length = 110 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I IDR + LA +GL ++ + +R ++ P+ SI KI Sbjct: 9 DILGRIDRERLARGWSEYTLAENSGLTQSTLSTWRRRNLQ-----PNVTSIEKICHGLGI 63 Query: 68 TICQLLDLPFSDGR 81 T+ Q + + Sbjct: 64 TLSQFFEEDAAIHH 77 >gi|253579354|ref|ZP_04856624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849452|gb|EES77412.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 298 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + I + +T LA K G+ S +K +R P ++ + Sbjct: 5 KIGKYIAGKRKSLGMTQKQLAEKLGMSDKSVSKWERGVC-----LPDVSVYKELCSILGI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 ++ + L +K + + Sbjct: 60 SLNEFLAGEDIAQENMIQKSETNIIEVI 87 >gi|225406864|ref|ZP_03761053.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] gi|225042620|gb|EEG52866.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 15/36 (41%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I ++ L+ LA++ G+ + N + + Sbjct: 5 IRDKRKQQGLSQEELAKRCGVSRQTVNAIENDKYDP 40 >gi|225017527|ref|ZP_03706719.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum DSM 5476] gi|224949677|gb|EEG30886.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum DSM 5476] Length = 83 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + E H+LT + LAR + +++ +R R E + + ++ Sbjct: 4 NRIRDLREDHDLTQAELARMLSVSRQAYSGYERGV-----RSIPFEILCQFALFYGTSLD 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92 L + K+K + Sbjct: 59 YLTGRTDVKAPYPKPKQKNFVV 80 >gi|106879454|emb|CAJ20007.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 185 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 45/158 (28%), Gaps = 5/158 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ E L+ + L+R +G+ + + + S ++ L + Sbjct: 11 VGAQVRRLREFRGLSVAELSRLSGVSRATLSMLESGRGNPTIETVSAIAVALRLPLGDLL 70 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + P T + LL +G G P R Sbjct: 71 VDPTPPEPVLRPGTPRPQTSRQDLLDRIGAGGHSEIWRLRL-CGAGRRVDSPPHTRGTLE 129 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + A++ + P+ ++ A + + Sbjct: 130 RVVALRGRLRLGPVD----RPVVLATGDFVVFPADEPH 163 >gi|254247276|ref|ZP_04940597.1| hypothetical protein BCPG_02063 [Burkholderia cenocepacia PC184] gi|124872052|gb|EAY63768.1| hypothetical protein BCPG_02063 [Burkholderia cenocepacia PC184] Length = 228 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 6/135 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + KI AA + Sbjct: 35 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ ++ S P Sbjct: 90 VAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPA-AAEFHELRIAPLHTEP 148 Query: 129 GIYAIQTQDTRHKTQ 143 G Sbjct: 149 GARRAPGTTVNLVVS 163 >gi|116512822|ref|YP_811729.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108476|gb|ABJ73616.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 175 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 5/77 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + LT GLA G+ ++ + ++ R P + +F++ A +I + Sbjct: 14 IKEFRKNKKLTQQGLADLVGVKNSAISNYEQGT-----RIPKRDFLFRVANALGVSIDEF 68 Query: 73 LDLPFSDGRTTEKKEKE 89 + + +T + + Sbjct: 69 FPIQNEETSSTLSEINK 85 >gi|333025217|ref|ZP_08453281.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332745069|gb|EGJ75510.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 495 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 4/105 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ER L+ LA++ L ++ ++ P+ ++ Sbjct: 12 ARLKELKERSGLSYGQLAKRLHLSTSTLHRYCNGDALPAEFTPAD----RLARLCGADRA 67 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 +L+DL + + P G Sbjct: 68 ELMDLHRRWLLADAARAAAKEQQEAVRAEPPRPAPVEPVPEGAAE 112 >gi|332365009|gb|EGJ42774.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 74 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QIFN 59 >gi|325262674|ref|ZP_08129410.1| DNA-binding protein [Clostridium sp. D5] gi|324031768|gb|EGB93047.1| DNA-binding protein [Clostridium sp. D5] Length = 545 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 2/101 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I R + LT LA K G+ + +K + G G E++ +L + + + Sbjct: 6 GQFIARRRKAIGLTQKELAEKLGVTNKAVSKWETGG--GMPDVSVLETLAGVLEVSVDEL 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + + + + G V Sbjct: 64 LKGERQADQTELMIPQPVQRMKRGRLIAGAVTGILALAVLA 104 >gi|323350743|ref|ZP_08086403.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322123023|gb|EFX94722.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|324991948|gb|EGC23871.1| transcriptional regulator [Streptococcus sanguinis SK405] gi|325686508|gb|EGD28536.1| transcriptional regulator [Streptococcus sanguinis SK72] gi|325689266|gb|EGD31272.1| transcriptional regulator [Streptococcus sanguinis SK115] Length = 74 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|313885596|ref|ZP_07819346.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619326|gb|EFR30765.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 63 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 W+ I+R+ + +TP LA+ A + + +GR + + E FK+ A + + Sbjct: 2 WKVIERLMKEKGMTPYSLAKAASITKQGLYALR----DGRTKTITLEYAFKVADALDVDV 57 Query: 70 CQL 72 + Sbjct: 58 NEF 60 >gi|310658350|ref|YP_003936071.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825128|emb|CBH21166.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 328 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ + LA K + S +K + G P + I ++ + Sbjct: 3 LADKIILLRKKSGWSQEELAEKLNVSRQSISKWE-----GAQSVPGMDKILQLSEIFGVS 57 >gi|300721571|ref|YP_003710846.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC 19061] gi|297628063|emb|CBJ88614.1| Predicted transcriptional regulator [Xenorhabdus nematophila ATCC 19061] Length = 92 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ E + LT +A+ G++P++ ++ + + S ++ + A Sbjct: 30 ERLRETLQAWRRHAGLTRQEIAKIMGVNPSTVSRMESNVDKA-----SVNTLARYARACG 84 Query: 67 ETIC 70 Sbjct: 85 IENP 88 >gi|297156337|gb|ADI06049.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 218 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 5/85 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R LT AR AGL P ++ + R PS + + T Sbjct: 24 VAPRLRDLRRRSGLTLEAAARLAGLSPAHLSRLETA-----RRQPSLPMLLALARTYGTT 78 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 + LL + + ++ Sbjct: 79 VSDLLGEVSPERDPILRADRTAAWE 103 >gi|295134500|ref|YP_003585176.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294982515|gb|ADF52980.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 134 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 6/119 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + I I R+ E + LA + G+ S ++ ++ E + K Sbjct: 1 MNSTATPHIGRKISRIRELRGMKQETLAEELGISQQSVSQMEQNEN------LEDEKLDK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + A + + + + G + +K + Sbjct: 55 VAKALGVSKEAIKNFSEEAILNIIGNTYHVDNSSAVNYGCTFNPIDKIIEQSDKIEELY 113 >gi|293364378|ref|ZP_06611104.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307702656|ref|ZP_07639608.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|291317224|gb|EFE57651.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623772|gb|EFO02757.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] Length = 165 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + + + LA + + S +K + + P E I ++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T LL S+ + E +E Y+ S G + Sbjct: 57 TTDYLLLDENSEKGSIEVILEEDKDKYYKEVKSFGLWQVIYI 98 >gi|305682108|ref|ZP_07404912.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266] gi|305658581|gb|EFM48084.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266] Length = 274 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I E LT S LA++ G + +K + R E + +I + + Sbjct: 10 IAHVIAGFREEAALTQSQLAQRLGKPQSFISKLESGE-----RSLRVEELPQIAQSLGVS 64 Query: 69 I 69 Sbjct: 65 P 65 >gi|257065249|ref|YP_003144921.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792902|gb|ACV23572.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 194 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + R ++ LA+ + + + + +P +S+ I N Sbjct: 2 EVGKTIKDLRTRSGMSQEELAKNVFVSRQTVSSWENEKS-----YPDVQSLALIAELFNT 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|229490209|ref|ZP_04384056.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229322957|gb|EEN88731.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 470 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ L+ + LA+ + + N+ + R + + +I Sbjct: 6 VGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ + P Sbjct: 61 TTFFSPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVSTHP 102 >gi|269129041|ref|YP_003302411.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313999|gb|ACZ00374.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 247 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 50/198 (25%), Gaps = 14/198 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + LT + LA G+DP + + G R + + T Sbjct: 4 ERLRAALLERGLTAAALAEAIGVDPKTVERWITKGRTPYRRHRFAVASQLGVDETYLWPE 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + +E P G F G + I Sbjct: 64 ALSRQQMASASESEIVTVYPHRWSVPRDVWGRLFGKAKREIGVLVYAGLFLSEDAGVQKI 123 Query: 131 YAIQTQDTRHKTQ---DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 +A + + + + P + GD + K R ++ + L + Sbjct: 124 FAEKARA-GVRVRILLGDPDSPH-------VAERGADEGVGDAMAAKIRNAMVMYRPLRA 175 Query: 188 RRGRSIDLMS---LNCCY 202 L S N Y Sbjct: 176 IESVEFRLHSTVLYNSIY 193 >gi|227500241|ref|ZP_03930310.1| bifunctional S24 family peptidase/transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227217631|gb|EEI82940.1| bifunctional S24 family peptidase/transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 174 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 2/94 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + N+T L+ G+ P+S + R E + + I L + + Sbjct: 11 NRLKDLLQEKNMTQKELSNLTGITPSSISDWLRGKYEAK--QDKIDIIATALNVSQAYLM 68 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + + K+ L F Sbjct: 69 GYDVPKVNHIKMFAKESNSNRNLTNNQENIISLF 102 >gi|210613657|ref|ZP_03289816.1| hypothetical protein CLONEX_02023 [Clostridium nexile DSM 1787] gi|210151087|gb|EEA82095.1| hypothetical protein CLONEX_02023 [Clostridium nexile DSM 1787] Length = 98 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I + + + +T + LA +G+ ++ N R + P +++ KI Sbjct: 19 MTYSDAIIKRLTDLCVERGITTNKLATLSGITQSTLNSMMRGET----KNPKLKTLRKIA 74 Query: 63 AATNETICQLLDLPFSDGRTTEKK 86 N T+ +LLD P + E + Sbjct: 75 MGFNMTVSELLDFPEMNEMEFEDE 98 >gi|183597904|ref|ZP_02959397.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] gi|188022666|gb|EDU60706.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] Length = 119 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ ++ LT LA+K + ++ +R + +++F IL + Sbjct: 16 VGKEIFRLRKKRGLTGKQLAKKLNVSQQQISRYERGVCN-----INVDTLFVILHELGCS 70 >gi|163813865|ref|ZP_02205259.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] gi|158450735|gb|EDP27730.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] Length = 351 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + LT +A G+ + NK ++ +P + + Sbjct: 2 RIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNT-----YPDISLLPALARLLKI 56 Query: 68 TICQLLDLPF 77 + +L Sbjct: 57 DMNELFSFHE 66 >gi|188580819|ref|YP_001924264.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179344317|gb|ACB79729.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + E I + + L+ + L G+ K +R R + I ++L Sbjct: 18 VGERIVALRKARGLSQAALGAAVGVTFQQVQKYERGTN--RVGAGRLQEIARLLEVP 72 >gi|21325693|dbj|BAC00314.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] Length = 104 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S K + + + + ++ +T LA +G+ +K +R P+ ++ + + Sbjct: 38 SRKALGQKLVKARKQRGVTQVQLAEASGVQQAEISKIERGLAN-----PTFSTLESLASH 92 Query: 65 TN 66 Sbjct: 93 LG 94 >gi|56476257|ref|YP_157846.1| hypothetical protein ebD35 [Aromatoleum aromaticum EbN1] gi|56312300|emb|CAI06945.1| hypothetical protein, potentially DNA-binding [Aromatoleum aromaticum EbN1] Length = 89 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KI + M + LT +AR AG+ TS ++ + GR + ++ A Sbjct: 11 KIGSTVREMRQARGLTQQEVARLAGVGRTSLSQLEN----GRIGDIGIRKLLRVCAVLG 65 >gi|19554107|ref|NP_602109.1| hypothetical protein NCgl2819 [Corynebacterium glutamicum ATCC 13032] gi|62391757|ref|YP_227159.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41327099|emb|CAF20943.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 127 Score = 44.0 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S K + + + + ++ +T LA +G+ +K +R P+ ++ + + Sbjct: 61 SRKALGQKLVKARKQRGVTQVQLAEASGVQQAEISKIERGLAN-----PTFSTLESLASH 115 Query: 65 TN 66 Sbjct: 116 LG 117 >gi|317480761|ref|ZP_07939847.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] gi|316903102|gb|EFV24970.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] Length = 161 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I + + ++ N+T LA G++ + K ++ S + + K+ +A Sbjct: 16 RERIGSRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYN-----VSIDILSKVTSAL 70 Query: 66 NE 67 Sbjct: 71 GF 72 >gi|306846135|ref|ZP_07478697.1| XRE family transcriptional regulator [Brucella sp. BO1] gi|306273386|gb|EFM55247.1| XRE family transcriptional regulator [Brucella sp. BO1] Length = 182 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ LA++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|294141035|ref|YP_003557013.1| UmuD protein [Shewanella violacea DSS12] gi|293327504|dbj|BAJ02235.1| UmuD protein [Shewanella violacea DSS12] Length = 147 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 12/127 (9%) Query: 101 GGFFDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 P S + + + SM + Sbjct: 1 MTMMKVIPISASAGITGFESPATDYKQLPLSLDELLIQHPSATFIGQASGCSMQNVGIFD 60 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDI 212 GDILI++ ++V D ++ G+ V K++ ++R L+S N + + Sbjct: 61 GDILIVDRHVKVQDQDVIV-ANYNGNFVCKIIDTKRR---MLLSANDEHQPVVIHEYDQF 116 Query: 213 EWIARIL 219 ++ Sbjct: 117 SVEGIVV 123 >gi|253579257|ref|ZP_04856527.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849355|gb|EES77315.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 177 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I E + LA +G++ + K + R P + + KI A Sbjct: 2 VGKKIRAFREFRGYSQIQLAELSGINVGTIRKYELGI-----RNPKPDQLEKIATALG 54 >gi|206602565|gb|EDZ39046.1| ParB-like partition protein [Leptospirillum sp. Group II '5-way CG'] Length = 313 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 13/182 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I AID + +R+ LT A+ G + ++ S E+ K L Sbjct: 127 EIARAIDEIVKRYGLTQETCAKALGKSRSYVSRHLSLL-------MSDETTMKALETGMI 179 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + L ++ + L P + + Sbjct: 180 RDPEAVTLMNRMESGVRQEFLDRALSTNTPITVRAVREELERTESPGRREFSGSFGAAEP 239 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 Y ++ + S P + + + D +++ + K+L Sbjct: 240 TLPYPVEES------RPPSSAPELSIDETREVGKSRPPEAKDPVVMIDLPLGVWKKLLGR 293 Query: 188 RR 189 Sbjct: 294 LG 295 >gi|206973030|ref|ZP_03233952.1| transcriptional regulator Xre [Bacillus cereus AH1134] gi|206731914|gb|EDZ49114.1| transcriptional regulator Xre [Bacillus cereus AH1134] Length = 108 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T LA L ++ +R R P ++ +I N + Sbjct: 5 GNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58 >gi|167749537|ref|ZP_02421664.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] gi|167657461|gb|EDS01591.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] Length = 380 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 5/76 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + + LT LA G+ + ++ + +P + I + Sbjct: 15 KLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGST-----YPDITLLPTIASYFEI 69 Query: 68 TICQLLDLPFSDGRTT 83 T+ +L+ + Sbjct: 70 TLDELMGMENWRSEEQ 85 >gi|149373125|ref|ZP_01892013.1| hypothetical protein SCB49_14705 [unidentified eubacterium SCB49] gi|149354273|gb|EDM42842.1| hypothetical protein SCB49_14705 [unidentified eubacterium SCB49] Length = 110 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIF 59 MTS E I + + LT + LA K LD + +K + + R P IF Sbjct: 1 MTSLMKTTFGEYIRLLRNENELTLTQLAAKLNLDSANLSKIENGKRDFDEKRLPKLAKIF 60 Query: 60 KI 61 K+ Sbjct: 61 KL 62 >gi|145596208|ref|YP_001160505.1| peptidase S24, S26A and S26B [Salinispora tropica CNB-440] gi|145305545|gb|ABP56127.1| peptidase S24, S26A and S26B [Salinispora tropica CNB-440] Length = 133 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 3/84 (3%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL--LIKPRTGDIVAKVLISRRGRSIDL 195 SM+P R GD +++ + + GD + + + R +V K + L Sbjct: 35 AVLVTGPSMVPTLRHGDAVLVRRGDRGIRAGDVVVAVFRSRPDLLVVKRAVGPIAEGWWL 94 Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219 + N D+ + R++ Sbjct: 95 VGDNPLITDDSRAYGGADIWGRVV 118 >gi|39841578|gb|AAR31194.1| unknown [Burkholderia pseudomallei 1026b] Length = 67 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI + LT + +A + G ++ ++ + + PS ++ K AA Sbjct: 4 LRAILAIRHEAGLTQAQVAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAAFG 59 >gi|76810570|ref|YP_331534.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|167721748|ref|ZP_02404984.1| putative DNA-binding protein [Burkholderia pseudomallei DM98] gi|167740723|ref|ZP_02413497.1| putative DNA-binding protein [Burkholderia pseudomallei 14] gi|167847816|ref|ZP_02473324.1| putative DNA-binding protein [Burkholderia pseudomallei B7210] gi|167900133|ref|ZP_02487534.1| putative DNA-binding protein [Burkholderia pseudomallei 7894] gi|167904782|ref|ZP_02491987.1| putative DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|167913061|ref|ZP_02500152.1| putative DNA-binding protein [Burkholderia pseudomallei 112] gi|167920999|ref|ZP_02508090.1| putative DNA-binding protein [Burkholderia pseudomallei BCC215] gi|76580023|gb|ABA49498.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] Length = 105 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI + LT + +A + G ++ ++ + + PS ++ K AA Sbjct: 42 LRAILAIRHEAGLTQAQVAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAAFG 97 >gi|83859650|ref|ZP_00953170.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83852009|gb|EAP89863.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 66 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI + + + LA K + + + + PS F+I Sbjct: 3 NAIKELRADRGWSQAALADKLDVSRQTVISIENGKYD-----PSLPLAFRIARVFG 53 >gi|315926028|ref|ZP_07922230.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620668|gb|EFV00647.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 323 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 5/53 (9%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +R + LA + G+ S +K + G P + K+ + Sbjct: 10 LRKRAEWSQEELAEQMGVSRQSISKWE-----GAQSIPDMNRLLKLSQIFGVS 57 >gi|317121314|ref|YP_004101317.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591294|gb|ADU50590.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter marianensis DSM 12885] Length = 464 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 11/106 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R L+ LA +AG+ + + + PS ++ A Sbjct: 28 VVNGLRAARLRLGLSQQELAARAGVTRQAVSAIEGGQA-----APSLGVALRLARALG-- 80 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + E E+ L+ P G Sbjct: 81 ----CRVEDLFWLDDPEPEVEVELVGTGAEDPEPQGAPASRPAGPG 122 >gi|308180192|ref|YP_003924320.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045683|gb|ADN98226.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 125 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 9/71 (12%) Query: 1 MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M ++ + I + A+++ LT + +A AGL ++ K+ PS ++ Sbjct: 1 MAFLKIDNGELLKNIRQFAKKNGLTLAEVATLAGLSASAIYSWKKHT-------PSVGTL 53 Query: 59 FKILAATNETI 69 ++ + Sbjct: 54 KEVAQVLGTSY 64 >gi|295108966|emb|CBL22919.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 351 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + LT +A G+ + NK ++ +P + + Sbjct: 2 RIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNT-----YPDISLLPALARLLKI 56 Query: 68 TICQLLDLPF 77 + +L Sbjct: 57 DMNELFSFHE 66 >gi|224372182|ref|YP_002606554.1| helix-turn-helix protein [Nautilia profundicola AmH] gi|223588476|gb|ACM92212.1| helix-turn-helix protein [Nautilia profundicola AmH] Length = 272 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 45/180 (25%), Gaps = 23/180 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I E L S LA +AG+ ++ K + P+ +I+ I Sbjct: 3 LGEKIKFFRENKGLNLSELASRAGVAKSTLFKIEENKTN-----PTINTIWAIAEVLGVP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +L+ G E + + + P Sbjct: 58 FGELVGEGEIKGEGVSVVLIEKTDEFESYKMNLKTSA----------EYIAKPHFAGAVE 107 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-----CGDRLLIKPRTGDIVAK 183 IY ++ K + G+ + + ++ + K Sbjct: 108 RIYVLKGD---VKVGSVDDIHTLHSGETVEFEADKTHIYSALTPSTLIVTIYYPKEKYFK 164 >gi|188492331|ref|ZP_02999601.1| bacteriophage CI repressor protein [Escherichia coli 53638] gi|188487530|gb|EDU62633.1| bacteriophage CI repressor protein [Escherichia coli 53638] Length = 129 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 9/74 (12%) Query: 1 MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M + + E +D ++++H+L+ S LAR AG+ +S N K+ G + +S Sbjct: 1 MDMRKKQYDTPLAERLDTISQQHHLSGSDLARIAGVGRSSVNAWKKRGTISK------DS 54 Query: 58 IFKILAATNETICQ 71 KI ATN ++ Sbjct: 55 AAKIAEATNVSLSW 68 >gi|169631439|ref|YP_001705088.1| putative DNA-binding protein [Mycobacterium abscessus ATCC 19977] gi|169243406|emb|CAM64434.1| Putative DNA-binding protein [Mycobacterium abscessus] Length = 191 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%) Query: 3 SFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 H + + R + L+ LAR++GL + +K ++ P+ E++ + Sbjct: 1 MTDHNTLVARNVRRYRQERALSLGDLARRSGLSKQTVSKIEQGVGN-----PTVETLALL 55 Query: 62 LAATNETIC 70 A Sbjct: 56 GEALQVPPQ 64 >gi|168217416|ref|ZP_02643041.1| transcriptional regulator [Clostridium perfringens NCTC 8239] gi|182380504|gb|EDT77983.1| transcriptional regulator [Clostridium perfringens NCTC 8239] Length = 141 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 6/56 (10%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + N++ LA++ + + +K + +P E++ + + Sbjct: 7 LKELRKEKNISQEQLAKELNISRQAISKWESGKA-----YPDIENLILLRKIFGVS 57 >gi|162148230|ref|YP_001602691.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786807|emb|CAP56390.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I R+ +L+ GLA + G+ P+ N + R + + K+ A + Sbjct: 5 RIGYIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQ-----RSVTASLLIKLTRALDV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +I L + R + PLL + P Sbjct: 60 SIEALSGVDEQRLRGLLHEALSDPLLGAHAVPAQEIAVLAAQPE 103 >gi|28378012|ref|NP_784904.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254556218|ref|YP_003062635.1| transcription regulator [Lactobacillus plantarum JDM1] gi|28270846|emb|CAD63751.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254045145|gb|ACT61938.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 125 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 9/71 (12%) Query: 1 MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M ++ + I + A+++ LT + +A AGL ++ K+ PS ++ Sbjct: 1 MAFLKIDNGELLKNIRQFAKKNGLTLAEVATLAGLSASAIYSWKKHT-------PSVGTL 53 Query: 59 FKILAATNETI 69 ++ + Sbjct: 54 KEVAQVLGTSY 64 >gi|152968233|ref|YP_001364017.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362750|gb|ABS05753.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 70 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 2/55 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + T + LA + + N + + P + ++L Sbjct: 3 NRIRALRTERGWTQAALADLLDVSRQTVNALETGRYD--PSLPLAFRLARLLERP 55 >gi|307708478|ref|ZP_07644943.1| conserved domain protein [Streptococcus mitis NCTC 12261] gi|322376332|ref|ZP_08050825.1| conserved domain protein [Streptococcus sp. M334] gi|307615394|gb|EFN94602.1| conserved domain protein [Streptococcus mitis NCTC 12261] gi|321282139|gb|EFX59146.1| conserved domain protein [Streptococcus sp. M334] Length = 74 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESTGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|317055988|ref|YP_004104455.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315448257|gb|ADU21821.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 179 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/133 (9%), Positives = 34/133 (25%), Gaps = 9/133 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + +LT + L+++ G+ + ++ + R + + L T + Sbjct: 6 ENLRTAMAERSLTQAELSKRTGISKSFISQYLSGKF--KPREDKLSILAQALGTTKGALL 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 ++ + F + T + + R N Sbjct: 64 GYEST-----GSSSNDNDIHKVPVFSADDPSNQWGEEYANTEHGSYRFYI--CRDDKNRP 116 Query: 131 YAIQTQDTRHKTQ 143 + + Sbjct: 117 FVMFGDYLLVSID 129 >gi|300694677|ref|YP_003750650.1| phage regulatory protein [Ralstonia solanacearum PSI07] gi|299076714|emb|CBJ36054.1| putative phage regulatory protein [Ralstonia solanacearum PSI07] Length = 118 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 K++ E + + H LT LA G+ + + GR R P Sbjct: 10 KELGERVAEARKAHGLTQQQLAEALGIAQQTLAHYE----VGRARLP 52 >gi|228962123|ref|ZP_04123603.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797559|gb|EEM44692.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 66 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 16/40 (40%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + + + LT + LA LD TS +K + R Sbjct: 7 FLREIRKEKGLTQNQLANLLDLDKTSISKYESGIHSPSLR 46 >gi|229056452|ref|ZP_04195865.1| hypothetical protein bcere0026_5790 [Bacillus cereus AH603] gi|228720926|gb|EEL72475.1| hypothetical protein bcere0026_5790 [Bacillus cereus AH603] Length = 75 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N T S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41 >gi|228919535|ref|ZP_04082899.1| hypothetical protein bthur0011_5600 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228977432|ref|ZP_04137826.1| hypothetical protein bthur0002_6470 [Bacillus thuringiensis Bt407] gi|229042544|ref|ZP_04190287.1| hypothetical protein bcere0027_6090 [Bacillus cereus AH676] gi|229077996|ref|ZP_04210605.1| hypothetical protein bcere0023_6860 [Bacillus cereus Rock4-2] gi|229165625|ref|ZP_04293398.1| hypothetical protein bcere0007_6060 [Bacillus cereus AH621] gi|228617860|gb|EEK74912.1| hypothetical protein bcere0007_6060 [Bacillus cereus AH621] gi|228705334|gb|EEL57711.1| hypothetical protein bcere0023_6860 [Bacillus cereus Rock4-2] gi|228726763|gb|EEL77977.1| hypothetical protein bcere0027_6090 [Bacillus cereus AH676] gi|228782256|gb|EEM30440.1| hypothetical protein bthur0002_6470 [Bacillus thuringiensis Bt407] gi|228840178|gb|EEM85455.1| hypothetical protein bthur0011_5600 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 75 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N T S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41 >gi|229177211|ref|ZP_04304599.1| hypothetical protein bcere0005_5860 [Bacillus cereus 172560W] gi|228606271|gb|EEK63704.1| hypothetical protein bcere0005_5860 [Bacillus cereus 172560W] Length = 75 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N T S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41 >gi|270284174|ref|ZP_05965683.2| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] gi|270277253|gb|EFA23107.1| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] Length = 365 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/99 (10%), Positives = 30/99 (30%), Gaps = 8/99 (8%) Query: 5 SHKKIW---EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S ++I + + + ++T LA G+ + +K + +P + + I Sbjct: 12 SGEEIMTFSDNLVSLRANRHMTQEQLAMLVGVSRQAISKWESGKA-----YPEMDKLLII 66 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 ++ L+ + + + Sbjct: 67 CDLFTVSLDDLVLGDVTQPAPPAVRPTSQDTVLMHDGHD 105 >gi|239625412|ref|ZP_04668443.1| dna-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239519642|gb|EEQ59508.1| dna-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 67 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 13/36 (36%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + ++ LA K G+ + N + + Sbjct: 5 IRERRKERGISQEELAGKCGVSRQTVNAIENNKYDP 40 >gi|30018862|ref|NP_830493.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|29894404|gb|AAP07694.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] Length = 75 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N T S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41 >gi|332535943|ref|ZP_08411645.1| putative prophage repressor [Pseudoalteromonas haloplanktis ANT/505] gi|332034677|gb|EGI71230.1| putative prophage repressor [Pseudoalteromonas haloplanktis ANT/505] Length = 70 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 7/65 (10%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEW 214 ++ ++ + ++ K LI G L + N +P + ++ + Sbjct: 1 MIFVDPEAEYIYSSYVVAHLDDNQATFKQLIIENGHKF-LKAANPNWPEQLIPINGNCTL 59 Query: 215 IARIL 219 + +++ Sbjct: 60 VGKVI 64 >gi|325838540|ref|ZP_08166562.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490835|gb|EGC93137.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 110 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + E I + + L+ L+ K + + K + + ++I K Sbjct: 1 MTM----TLGEKIKKYRQARGLSQEQLSEKLSVSRQAVTKWESDKGIPDIH--NLQAIAK 54 Query: 61 ILA 63 + Sbjct: 55 LFN 57 >gi|325263097|ref|ZP_08129832.1| DNA-binding protein [Clostridium sp. D5] gi|324031490|gb|EGB92770.1| DNA-binding protein [Clostridium sp. D5] Length = 157 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 15/151 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP---------STESI 58 +I E I ++ + +NLT LA K + S +K + +T+ + Sbjct: 2 EISEKILQLRKANNLTQEELAEKLNVSRQSISKWESGQTIPELEKLISLSSVFQVTTDYL 61 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP------SGSGGFFDSGVFPTG 112 K +I + E K+++ + + Sbjct: 62 LKPSELDELSIKTEILEKKQQELEKESKKRKSSQICILSCAGIYLAAIVVVILIRNISQE 121 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143 N + P I P + Sbjct: 122 NDFLWNIFPGITLPLIAFLLATAISIWVCVR 152 >gi|322412102|gb|EFY03010.1| Transcriptional regulator, Cro/CI family protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 71 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R + + +A+ AG+ + + +R PS KI +E Sbjct: 5 LKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSIVIAMKIAKVFHEP 59 Query: 69 ICQLLDLPF 77 + ++ L Sbjct: 60 VEEVFRLVE 68 >gi|320326809|gb|EFW82846.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882609|gb|EGH16758.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 123 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + +L+ + LA G D + +R PS E + K+ A + Sbjct: 18 VGAKIKVLRKMADLSQAELAALIGCDAPIIGRYERGI-----HMPSIEQLIKLSTALKVS 72 Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90 +LL + R + Sbjct: 73 PAELLPNQDDEIRQQLISLRSQ 94 >gi|310659741|ref|YP_003937462.1| BcrR protein [Clostridium sticklandii DSM 519] gi|308826519|emb|CBH22557.1| BcrR [Clostridium sticklandii] Length = 203 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + ++ +++N T LA + + T+ +K + +PS +S+ I A Sbjct: 2 ELGEKLQQLRKQNNWTQEQLAEQLYISRTAVSKWESGKG-----YPSIDSLKNISALFKI 56 Query: 68 TICQ 71 +I Sbjct: 57 SIDD 60 >gi|304439386|ref|ZP_07399298.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372168|gb|EFM25762.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 67 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + L+ LA GL S + I P+ E+ +KI + Sbjct: 5 IENKIAQFRKEKGLSQHKLAEAVGLKRRSIMAYESNTI-----SPTLETAYKICKVLGKD 59 Query: 69 ICQLLDLP 76 + ++ Sbjct: 60 MTEVFIFK 67 >gi|295093073|emb|CBK82164.1| Helix-turn-helix. [Coprococcus sp. ART55/1] Length = 45 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 16/43 (37%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 KI I +R T L+ K G+ + +K +R Sbjct: 1 MDQIKIGRFIADERKRKGYTQKQLSEKLGISDKTISKWERGVS 43 >gi|307726765|ref|YP_003909978.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307587290|gb|ADN60687.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 212 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ +T L+R AG+ + ++ +R P+ +++ A Sbjct: 34 RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L + EIP L + + G + + Sbjct: 89 SLDSLFAAQKTPEAIAVAGPHEIPTLSGHDAKYQLRVWGPIELAGK-FEWYEL 140 >gi|270269109|gb|ACZ66101.1| Signal peptidase I [Staphylococcus aureus] Length = 187 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 142 TQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 SM P + D +I++ + GD ++ + K +I + G S+ + Sbjct: 32 VSGLSMYPTFDDKDKVIVSKISKTFNHLDNGDVVVFHQNKKNDYIKRIIGKPGDSVSYRN 91 Query: 198 LN 199 N Sbjct: 92 DN 93 >gi|266621706|ref|ZP_06114641.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288866607|gb|EFC98905.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 291 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + +R+N+T LA + + + +K + +P E + I + + Sbjct: 5 DNLQVLRKRNNMTQEQLAEQLEVSRQAVSKWESGQS-----YPEMEKLLIICDMFHCDM 58 >gi|261343818|ref|ZP_05971463.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282568202|gb|EFB73737.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 103 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 5/74 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H I I + L+ + LA K L ++ + + + + I Sbjct: 1 MDIHSIIGTRIKNRRKELGLSGANLASKLNLSQQQISRYENGINK-----IPIDHLLDIA 55 Query: 63 AATNETICQLLDLP 76 I Sbjct: 56 DILMCPIEWFFKGY 69 >gi|209558928|ref|YP_002285400.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus phage NZ131.1] gi|209540129|gb|ACI60705.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus phage NZ131.1] Length = 222 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 37/151 (24%), Gaps = 6/151 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E +++T LA K G+ + ++ E + + ++ Sbjct: 1 MNRLKELRENNSITQQELAEKIGVHYRTIQNWEKDTKT----QIKPEKAKMLADYFDVSV 56 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL + ++K + + + Sbjct: 57 GYLLGYTDIPQKYEDEKFYKFSFDEEETIYPSSDMRDEDEKIK--EQFIEFNRYLRRYGV 114 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 DT K + GD ++ Sbjct: 115 FITNNEIDTVFKLIKHLDINNLYNGDKFLVR 145 >gi|169334840|ref|ZP_02862033.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] gi|169257578|gb|EDS71544.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] Length = 132 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ I + + N+T LA K + + +K +R +P I K+ + Sbjct: 3 NEMGRLISSLRKEKNMTQQELADKLNITDKAVSKWERGLS-----YPDISLIPKLADILD 57 Query: 67 ETIC 70 Sbjct: 58 IDPN 61 >gi|70733674|ref|YP_257314.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347973|gb|AAY95579.1| DNA-binding protein, putative [Pseudomonas fluorescens Pf-5] Length = 120 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + ++ NL+ + L + A L T + +R PS +++ ++ A + + Sbjct: 10 ERLRSLRKQKNLSQTELGQLAELHYTHIGRYERGTSR-----PSGDTLKRLADALDVS 62 >gi|15902995|ref|NP_358545.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|15458561|gb|AAK99755.1| Hypothetical protein spr0951 [Streptococcus pneumoniae R6] Length = 177 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 21 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 75 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 76 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 135 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 136 DLSDLIHTNIYLVETFDE 153 >gi|56965066|ref|YP_176798.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911310|dbj|BAD65837.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 193 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I + + ++ ++ LA++ G+ + K ++ P+ I+KI + Sbjct: 17 KQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGN-----PTLSVIWKIANGLH 71 Query: 67 ET 68 Sbjct: 72 IP 73 >gi|53715744|ref|YP_101736.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60683678|ref|YP_213822.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|253566443|ref|ZP_04843896.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|255011438|ref|ZP_05283564.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] gi|265767314|ref|ZP_06094980.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|313149255|ref|ZP_07811448.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|52218609|dbj|BAD51202.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60495112|emb|CAH09931.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|251944615|gb|EES85090.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|263252619|gb|EEZ24131.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|301165190|emb|CBW24760.1| putative transcriptional regulator [Bacteroides fragilis 638R] gi|313138022|gb|EFR55382.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 191 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 5/108 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + K + E I + E ++ LA ++GL + + +R PS + KI Sbjct: 1 MDTSKIVGEKIKSLRENKGISIEELAERSGL---AIEQIERIENN--IDLPSLAPLIKIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + LD G +K + + F + Sbjct: 56 RVLGVRLGTFLDDQDETGPVVSRKMEATDTISFSNNAIHSRKHMQYHS 103 >gi|331091855|ref|ZP_08340687.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402754|gb|EGG82321.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] Length = 177 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I E + LA +G++ + K + R P + + KI A Sbjct: 2 VGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGI-----RNPKPDQLEKIATALG 54 >gi|329916887|ref|ZP_08276421.1| hypothetical protein IMCC9480_2226 [Oxalobacteraceae bacterium IMCC9480] gi|327544649|gb|EGF30107.1| hypothetical protein IMCC9480_2226 [Oxalobacteraceae bacterium IMCC9480] Length = 84 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 19/50 (38%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 + K+I + +T LAR+AG++ + + + R Sbjct: 1 MTTKEIIAQLTARRRELKITQDELARRAGVNRRTIVAIEAGTSDVGLRRL 50 >gi|326405605|gb|ADZ62676.1| transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis CV56] Length = 107 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NL+ LA+K + S +K + P+T I + + Sbjct: 2 EISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKS-----LPTTGQIILLSEIFDC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 ++ LL + + + L GF +F Sbjct: 57 SLDTLLKGDKKMEEKAKHEIDDKRTLKLIYKVGWGFIIPLLF 98 >gi|322411791|gb|EFY02699.1| transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 158 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + H+LT A+ G+ S ++ + STE I +I N + Sbjct: 2 IGDNIKSLRHTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 56 Query: 69 ICQ 71 Sbjct: 57 YVD 59 >gi|322377260|ref|ZP_08051752.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] gi|321281973|gb|EFX58981.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] Length = 194 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 2/41 (4%), Positives = 16/41 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + + + L+ +A++ + + ++ + + + Sbjct: 1 MNRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKP 41 >gi|319936355|ref|ZP_08010771.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808470|gb|EFW05022.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 176 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/101 (10%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +M ++ ++ LA+ + + +K ++ +P E + + + N ++ Sbjct: 5 DNLKQMRKKKGISQEELAQLLNVSRQAVSKWEQGIG-----YPEVEKLLILSSQLNVSLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 L+ + T++ +L G + + Sbjct: 60 SLMADEIINNNTSQDNHCSGRILISSYDGKSIVNCYKILSS 100 >gi|317501737|ref|ZP_07959924.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896859|gb|EFV18943.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] Length = 177 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I E + LA +G++ + K + R P + + KI A Sbjct: 2 VGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGI-----RNPKPDQLEKIATALG 54 >gi|314922996|gb|EFS86827.1| LexA DNA binding domain protein [Propionibacterium acnes HL001PA1] Length = 224 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 39/214 (18%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 S +++ A+ R P+ LA + G TS + R S+ Sbjct: 28 PSAKEREVLAAVKEGLRRDGKAPTVRALAERTGAASTSTVQ----------RRISSLIEL 77 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 +L TN T+ + + + + + L + + Sbjct: 78 GLLRRTNGTLEVVEETVEACDPHGPQAFQVKLL--------------NPSNEEHDETVIA 123 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGD----RLLIK 174 VP H + +D M P GD++++ ++ D L+ Sbjct: 124 VPPQLLSH-------GEHAVIIVRDDGMSPNIHSGDLVVVRRISVSDLPDDPPETYLVAA 176 Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 G V + L + GR L S N + ++ Sbjct: 177 TAGGTTVVRTLSNVSGRRWLLAS-NPTHSPINLD 209 >gi|302344468|ref|YP_003808997.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641081|gb|ADK86403.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 189 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 50/175 (28%), Gaps = 15/175 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S KK+ E I ++ L+ +A++ GLD + + + +PS + KI Sbjct: 1 MSAKKLGERIADYRQKQGLSLEQMAQRTGLDQQFLSAVE-----AHDLYPSLGPLIKIAR 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT------ 117 + LD S + + + G + + G Sbjct: 56 TLGVRLGTFLDDQTSQDPLIVRLGQRQRQITTHRG-EQGPESTVFYSLGLGKVDRHMEPF 114 Query: 118 -VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 V + + + ++ + L + +L + + Sbjct: 115 FVELLPGDEDAQKRSSHEGEEFIVVVEGQVEL--IYGAERFVLEPGDSMYYNSVV 167 >gi|260427903|ref|ZP_05781882.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260422395|gb|EEX15646.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 131 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I E + LAR+ G+ + + E R + + +L + Sbjct: 16 GDRIAAAREAAGMGQEKLARRLGVKLKTLQGWENDLSE--PRANRLQMLAGLLNVSMGW 72 >gi|320012087|gb|ADW06937.1| Cupin 2 conserved barrel domain protein [Streptomyces flavogriseus ATCC 33331] Length = 194 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 18/139 (12%) Query: 1 MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 MT + + + R T LA +AG+ + ++ PS + Sbjct: 1 MTDLDQLTQSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTN-----PSVGTT 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSG 107 K+ A +I LLD ++ + L + S Sbjct: 56 VKLADALGVSITTLLDYEQGSQVRLVPADQMVRLWSTEAGSSNTLLVGTEARGPIELLSW 115 Query: 108 VFPTGNKWNTVGVPEIRSP 126 G+ + PE Sbjct: 116 HLMPGDSSLSDPHPEGTVE 134 >gi|227485105|ref|ZP_03915421.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236938|gb|EEI86953.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 67 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + L+ + LA+ GL S + I P+ E+ +KI ++ Sbjct: 5 IENRIREFRKEMGLSQNALAKMVGLKRRSIMAYESNTI-----SPTLETAYKICKVFDKD 59 Query: 69 ICQLLDLP 76 I ++ Sbjct: 60 IKEVFIFK 67 >gi|226313140|ref|YP_002773034.1| signal peptidase I [Brevibacillus brevis NBRC 100599] gi|226096088|dbj|BAH44530.1| signal peptidase I [Brevibacillus brevis NBRC 100599] Length = 166 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 32/106 (30%) Query: 143 QDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 + SM P D + + + + GD ++ + K +I+ G +++ S Sbjct: 30 EGESMAPTLNSNDRFLADKTYYDSHPIQRGDIVIFQAEKDRQYVKRVIALPGETLEYKSD 89 Query: 199 -----NC-----------------------CYPVDTVEMSDIEWIA 216 N + T+ I + Sbjct: 90 ILYINNKVVDEPYLASAKNVAQKENHYLTEDFGPITIPEDTIFVLG 135 >gi|15675312|ref|NP_269486.1| putative transcriptional regulator [Streptococcus pyogenes M1 GAS] gi|139473579|ref|YP_001128295.1| DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|13622491|gb|AAK34207.1| putative transcriptional regulator protein [Streptococcus pyogenes M1 GAS] gi|134271826|emb|CAM30060.1| putative DNA-binding protein [Streptococcus pyogenes str. Manfredo] Length = 71 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R + + +A+ AG+ + + +R PS KI E Sbjct: 5 LKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAMKIAKVFQEP 59 Query: 69 ICQLLDLPF 77 + ++ L Sbjct: 60 VEEVFRLVE 68 >gi|17549473|ref|NP_522813.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431726|emb|CAD18403.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 88 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 19/44 (43%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + +++ + ++ L+ + LA + G+ + + +R Sbjct: 7 RTPEQLPAMLKGFRKQAGLSQAELAARMGMRQQTLSALERNAEN 50 >gi|126442387|ref|YP_001062902.1| XRE family transcriptional regulator [Burkholderia pseudomallei 668] gi|126221878|gb|ABN85383.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 668] Length = 94 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + AI ++ E + LA GL+ + + +R S ++ K Sbjct: 1 MTALVQ-RFGAAIRQLREARAWSQEQLAEHPGLNRSYVGEIERGTAIA-----SIVTVDK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTE 84 + A I +LL G Sbjct: 55 LARAFGVPIARLLSPAGDAGPPPH 78 >gi|310767358|gb|ADP12308.1| Transcriptional regulator [Erwinia sp. Ejp617] Length = 189 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 13/144 (9%), Positives = 35/144 (24%), Gaps = 6/144 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H + + + + A+ G+ + +R P+ +++K Sbjct: 1 MDRLQH-HLARTLKAQRATRGWSLTQAAQMTGVSKAMLGQIERAES-----SPTIATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + N + +D + + TG + V + Sbjct: 55 IASGFNLPFSFFIAADIADRGAARSQGQLQGYRQPNHGMQIVPLFPFDAETGFEMLVVEL 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 + + + Sbjct: 115 VPGALSESSAHEQGVIEHAIVISG 138 >gi|301382068|ref|ZP_07230486.1| RstR1 [Pseudomonas syringae pv. tomato Max13] gi|302058949|ref|ZP_07250490.1| RstR1 [Pseudomonas syringae pv. tomato K40] gi|302130444|ref|ZP_07256434.1| RstR1 [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 203 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 6/106 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA----ATNET 68 + + NLT LA G+ P+ ++ + + + R + L ++ Sbjct: 43 LISLRSAQNLTQQQLADAVGITPSQISRYESG--QAKPRKIILLRLADALGVSSTELLQS 100 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 Q + + + +E L F S + Sbjct: 101 PVQRVVVGERRSIDPPSQLRERMLKEFSSMDSEEIRTAKAQAAEAG 146 >gi|298387336|ref|ZP_06996889.1| HicB family toxin-antitoxin system, antitoxin component [Bacteroides sp. 1_1_14] gi|298260005|gb|EFI02876.1| HicB family toxin-antitoxin system, antitoxin component [Bacteroides sp. 1_1_14] Length = 97 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 8/85 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + T + A+K G+ S +S PS ++ +I AA + + Sbjct: 3 HRIKELIKEKGYTQAQFAKKLGITRVSLIQSLEL--------PSGSTLERIAAALDVPMW 54 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 QL P + Y+ Sbjct: 55 QLFASPEEAKGEELTALIQHKSDYY 79 >gi|257465738|ref|ZP_05630109.1| Repressor of flagellae, putative [Actinobacillus minor 202] gi|257451398|gb|EEV25441.1| Repressor of flagellae, putative [Actinobacillus minor 202] Length = 110 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ + ++ LA +G+ ++ + P +I I + + Sbjct: 4 LGDNIKRIRKTAGISQQELADMSGVSKAQISRLENGEQN----NPQINTIVSIASNLGVS 59 Query: 69 ICQLLD 74 I +++ Sbjct: 60 IEEIIY 65 >gi|228966529|ref|ZP_04127582.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228793251|gb|EEM40801.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 277 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +H E + ++ + L+ LA K + +K + +P TE + I Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALADKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ + + G S G + Sbjct: 69 FEVSL-DYLLKETAEQSNENMEGYYVSQEMAEGYIVYGQKISKYIALGFSLLILSTIPYL 127 Query: 125 SPHNGIYAIQTQDTRHKTQD 144 Sbjct: 128 LFKENATMSTFLVIIIAVLG 147 >gi|219855544|ref|YP_002472666.1| hypothetical protein CKR_2201 [Clostridium kluyveri NBRC 12016] gi|219569268|dbj|BAH07252.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 375 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I I + + +T LA G+ S +K + +P + + Sbjct: 1 MMDMRELNIRRCIIQKRKEKGITQEQLADYIGVSKASVSKWESGLS-----YPDILLLPE 55 Query: 61 ILAATNETICQ 71 + N ++ + Sbjct: 56 LATYFNVSVDE 66 >gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] Length = 100 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + + I + + L+ + LA G+ ++ +R + S+ K L Sbjct: 5 NQIVGKEIRKRRKELGLSGAELAGLVGISQQQVSRYERGECNITL--DNLLSLAKALE 60 >gi|170754290|ref|YP_001780243.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119502|gb|ACA43338.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 136 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 5/88 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ L+ L K + + +K + P E + + ++ +L Sbjct: 7 LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + + + L S Sbjct: 62 VMDVKAKESVKTEPLVMNRLETIIDSID 89 >gi|160884331|ref|ZP_02065334.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|255691648|ref|ZP_05415323.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] gi|156110070|gb|EDO11815.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|260622719|gb|EEX45590.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] Length = 94 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I AI + +R +++ L+ G+ + + G +PS +I KI A Sbjct: 2 DIGNAIKLLRKRKDISQKELSNLCGISANALCSIESGGT-----FPSKSTIAKICNAL 54 >gi|148994210|ref|ZP_01823503.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] gi|147927351|gb|EDK78382.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] Length = 158 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 6/134 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHK 141 + IQT + Sbjct: 117 DLSDLIQTNIYLVE 130 >gi|187925298|ref|YP_001896940.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187716492|gb|ACD17716.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 229 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 6/150 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 32 VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L ++G E+ ++ S PT +++ + + + + Sbjct: 87 VAAFLRRHATNGFEHLPAERSSRVVSSNGRYSARPLYPDAEPTAAEFHELRIAPLHTEAG 146 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 A + ++ L+ Sbjct: 147 TRRA-PGTTVNLVVSEGTLEVSVHDQRQLL 175 >gi|83716369|ref|YP_438206.1| DNA-binding protein [Burkholderia thailandensis E264] gi|167579250|ref|ZP_02372124.1| DNA-binding protein [Burkholderia thailandensis TXDOH] gi|167614637|ref|ZP_02383272.1| DNA-binding protein [Burkholderia thailandensis Bt4] gi|257141225|ref|ZP_05589487.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83650194|gb|ABC34258.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 202 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 21 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +L P + +IP L + + G + + Sbjct: 76 LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130 >gi|41410065|ref|NP_962901.1| hypothetical protein MAP3967 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463985|ref|YP_883804.1| XRE family transcriptional regulator [Mycobacterium avium 104] gi|254777113|ref|ZP_05218629.1| transcriptional regulator, XRE family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|41398898|gb|AAS06517.1| hypothetical protein MAP_3967 [Mycobacterium avium subsp. paratuberculosis K-10] gi|48928160|gb|AAT47758.1| possible transcriptional regulator [Mycobacterium avium] gi|118165272|gb|ABK66169.1| transcriptional regulator, XRE family protein [Mycobacterium avium 104] Length = 138 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA K+G+ ++ +R R PS + + +I A Sbjct: 21 DIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERG-----LRKPSADVLNQIAKALRV 75 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L + + + ++ + Sbjct: 76 SAEVLYVRAGILEPSDKSQVRDAIVTDTA 104 >gi|54308994|ref|YP_130014.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46913424|emb|CAG20212.1| putative transcriptional regulator [Photobacterium profundum SS9] Length = 101 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 1/67 (1%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ L + G+DP+S + +GR P ++ +I + Sbjct: 10 RLKEARKAAGISQKELGIRLGMDPSSASGRMNHYEKGR-HMPDIATLRRIADELGVPLSY 68 Query: 72 LLDLPFS 78 + Sbjct: 69 FFCDSDN 75 >gi|15804867|ref|NP_290908.1| hypothetical protein Z5888 [Escherichia coli O157:H7 EDL933] gi|15834506|ref|NP_313279.1| transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187775901|ref|ZP_02799013.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188024876|ref|ZP_02774577.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|189010535|ref|ZP_02807807.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189402054|ref|ZP_02779862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189402821|ref|ZP_02791571.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189403845|ref|ZP_02785537.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189405572|ref|ZP_02822862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208808264|ref|ZP_03250601.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208813993|ref|ZP_03255322.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208819818|ref|ZP_03260138.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396646|ref|YP_002273817.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217326404|ref|ZP_03442488.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254796292|ref|YP_003081129.1| hypothetical protein ECSP_5374 [Escherichia coli O157:H7 str. TW14359] gi|12519290|gb|AAG59474.1|AE005659_9 hypothetical protein Z5888 [Escherichia coli O157:H7 str. EDL933] gi|13364730|dbj|BAB38675.1| putative transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187770260|gb|EDU34104.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188016183|gb|EDU54305.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|188999764|gb|EDU68750.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189357829|gb|EDU76248.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189364128|gb|EDU82547.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189368948|gb|EDU87364.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189379428|gb|EDU97844.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208728065|gb|EDZ77666.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208735270|gb|EDZ83957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208739941|gb|EDZ87623.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158046|gb|ACI35479.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217322625|gb|EEC31049.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254595692|gb|ACT75053.1| predicted protein [Escherichia coli O157:H7 str. TW14359] gi|320190592|gb|EFW65242.1| putative transcription regulator [Escherichia coli O157:H7 str. EC1212] gi|326345394|gb|EGD69137.1| putative transcription regulator [Escherichia coli O157:H7 str. 1125] gi|326346751|gb|EGD70485.1| putative transcription regulator [Escherichia coli O157:H7 str. 1044] Length = 154 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + + + ++ A + G + ++ +R G S ++I Sbjct: 1 MKMTLRKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55 Query: 61 ILAATNETIC 70 + A + Sbjct: 56 LANALSVEPW 65 >gi|299069653|emb|CBJ40926.1| DNA-binding transcriptional regulator [Ralstonia solanacearum CMR15] Length = 88 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 19/44 (43%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + +++ + ++ L+ + LA + G+ + + +R Sbjct: 7 RTPEQLPAMLKGFRKQAGLSQAELAARMGMRQQTLSALERNAEN 50 >gi|296110469|ref|YP_003620850.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] gi|295832000|gb|ADG39881.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] Length = 103 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + + NLT L+++ + + + ++ +PS E++ KI N + Sbjct: 7 GEKLKAVRKSKNLTQLELSKRLEVSKGTISAYEQGLS-----YPSLETLVKICEILNTS 60 >gi|293401078|ref|ZP_06645223.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306104|gb|EFE47348.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 177 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 43/148 (29%), Gaps = 12/148 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + +++LT LA ++ L ++ +R PS ++ IL A Sbjct: 2 DIGAKIKALRIQNDLTLEELASRSELTKGFLSQVERNLT-----SPSVSTLEDILEALGT 56 Query: 68 TICQLLDLPFSD-----GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + + E E +++ + + + T V + Sbjct: 57 DLASFFKESKQTKVVFSKQDHFIDEHEEYCIHWIVPNAQKNEMEPILLELHADKTSMVFD 116 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL 150 Y ++ + P+ Sbjct: 117 PHDGEEFGYVLEGR--ILLVNGEKEYPV 142 >gi|296123878|ref|YP_003631656.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296016218|gb|ADG69457.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 143 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++ E L+ + L+R+AGL ++ ++ + R S + I K+ A Sbjct: 85 LQQLLEAKGLSQAQLSREAGLPRSTISEVLKG-----KRRFSRQMIHKLAAYFQID 135 >gi|157829815|pdb|1ADR|A Chain A, Determination Of The Nuclear Magnetic Resonance Structure Of The Dna-Binding Domain Of The P22 C2 Repressor (1-76) In Solution And Comparison With The Dna-Binding Domain Of The 434 Repressor Length = 76 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++ + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALSKALQCSP 61 Query: 70 CQ 71 Sbjct: 62 DY 63 >gi|134103416|ref|YP_001109077.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006044|ref|ZP_06564017.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916039|emb|CAM06152.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 148 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I ++ LA++AG+ ++ +R R PS E + +I A Sbjct: 18 DLGAYIRTQRGNAQISLRQLAKRAGVSNPYLSQVERG-----LRKPSAEILQQIAKALRI 72 Query: 68 T 68 + Sbjct: 73 S 73 >gi|86159419|ref|YP_466204.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775930|gb|ABC82767.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 477 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + NLT + LA + G+ + N + R + + K+ Sbjct: 6 QHLGAKVRALRRQRNLTQAQLADRLGISASYLNLIEHH-----RRPLPAQLLIKLADLFE 60 >gi|115526465|ref|YP_783376.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520412|gb|ABJ08396.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 82 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%) Query: 1 MTSF--SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 MT + +I I ++ + S L +AGL + + + R Sbjct: 1 MTDLARTPSQIGNIIRSARKKRGQSQSQLGERAGLRQETISLIETGHPAAR 51 >gi|322804925|emb|CBZ02484.1| transcriptional regulator, XRE family [Clostridium botulinum H04402 065] Length = 130 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 5/90 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ L+ L K + + +K + P E + + ++ +L Sbjct: 7 LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + T + L S Sbjct: 62 VMDVKAKESTKTEPLVMNRLETIIHSIDRE 91 >gi|303234360|ref|ZP_07320999.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302494476|gb|EFL54243.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 143 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ NLT LA K+GL + + R PS E + KI A + I Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISEALDCDI 58 Query: 70 CQLLDLPFSDGRTTEK 85 L++ + Sbjct: 59 SALINHEPNSIFEIMH 74 >gi|300785909|ref|YP_003766200.1| SARP family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299795423|gb|ADJ45798.1| SARP family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 1034 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R +T + LAR+AG+ + R+ GR R P T SI +++AA Sbjct: 25 LRRRRGELGITQAELARRAGVSVRAV----RYLEHGRTRNPRTASIRQLIAALEPEP 77 >gi|300727575|ref|ZP_07060965.1| helix-turn-helix domain protein [Prevotella bryantii B14] gi|299775164|gb|EFI71766.1| helix-turn-helix domain protein [Prevotella bryantii B14] Length = 161 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I I + E + LAR G+D + ++ + + + KI A Sbjct: 98 RIGNRIKEIREERGIEARDLARLVGIDAANLSRIENGRY-----SVGLDILAKIATALG 151 >gi|327197636|ref|YP_004301327.1| gp51 [Brochothrix phage NF5] gi|296245459|gb|ADH03073.1| gp51 [Brochothrix phage NF5] Length = 62 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 W I+++ ++ + LA+KAG+ K+ GR + PS + + K+ A T+ Sbjct: 2 WHKIEKILIEKGMSQATLAKKAGIRSGDVTDLKK----GRIKKPSFDLVCKLADALEITL 57 Query: 70 CQ 71 Sbjct: 58 ED 59 >gi|288960685|ref|YP_003451025.1| transcriptional regulator [Azospirillum sp. B510] gi|288912993|dbj|BAI74481.1| transcriptional regulator [Azospirillum sp. B510] Length = 220 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 10/157 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +LT + LA AG+ +K + I PS S+ + A N I L Sbjct: 41 IRSLRRHLDLTVADLAAAAGISTGMLSKIENGQI-----SPSLASLQALAGALNVPITAL 95 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + + + SG ++ G + Sbjct: 96 FASFEEKRGCSYVRAGQGVGIERRGTKSGHQYELLGHSLGGDIGVEPFLITLREGAAPFT 155 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 S LYR GD + ++ GD Sbjct: 156 AFQHAGVEYLYMLSGELLYRHGD-----RSYEMRPGD 187 >gi|229827500|ref|ZP_04453569.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC 49176] gi|229788438|gb|EEP24552.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC 49176] Length = 217 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + T +A G+ + + + +P S+ K+ Sbjct: 2 EIGSKIKKSRTEAGFTQEQVAESLGVSRQTISNWENEKS-----YPDIISVLKMSDLFKV 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|271964073|ref|YP_003338269.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507248|gb|ACZ85526.1| transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 64 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + L+ L + G+ + N ++ + PS ++ T+ ++ Sbjct: 5 VRELRGSAGLSQQALGERLGVSRQTINAIEQGRYD-----PSLPLAIRLARFFGRTVEEV 59 Query: 73 LD 74 Sbjct: 60 FH 61 >gi|49082682|gb|AAT50741.1| PA4987 [synthetic construct] Length = 200 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 18/164 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + +R LT + LA ++ L ++ +R +PS ++F I + T Sbjct: 20 LGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLA-----YPSIPALFNIARSLGVT 74 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125 Q + + G D + P ++ + P Sbjct: 75 -IQWFFASEAAVDPADAGYVVRRNTRMSVHYEDGIIDELLTPQPSRQLEILHSRFPPGTY 133 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 Y+ + ++ + ++ + + Q+ GD Sbjct: 134 -SQQSYSHEGEEAGYILSG--------IFELWVGDRHFQLREGD 168 >gi|16519699|ref|NP_443819.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] gi|2495432|sp|P55409|Y4DJ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4dJ gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a gi|2182353|gb|AAB91639.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] Length = 77 Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 7/71 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + R+ LT + ++G + +R R P+ ++++ Sbjct: 1 MDM--RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERG-----RRNPTVITLYE 53 Query: 61 ILAATNETICQ 71 + A + + Sbjct: 54 LAQALGVSHVE 64 >gi|326444238|ref|ZP_08218972.1| hypothetical protein SclaA2_24369 [Streptomyces clavuligerus ATCC 27064] Length = 560 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 4/139 (2%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E + LAR+ G+ ++ ++ P + + Sbjct: 29 RLRELREASGRSYGALARRVGVSASTLHRYCSGHTVPMEFAP----VERFARLCGCQGDD 84 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L+ L ++ P G G + P + + P G Sbjct: 85 LVALHRLWMLADAERTLRQEAAGTLPRGGGARPPTTEAPGPAGPSGLPAPGTAVRPPGGA 144 Query: 132 AIQTQDTRHKTQDTSMLPL 150 A ++ + S L Sbjct: 145 AGRSAPAVEASAGPSGLRA 163 >gi|319946827|ref|ZP_08021061.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] gi|319746875|gb|EFV99134.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] Length = 295 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ ++ LA K G+ + K + P E++ I N +I Sbjct: 5 ENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGI-----PDIENMISISNLFNISID 59 Query: 71 QLLDLPF 77 +L+ Sbjct: 60 ELICNER 66 >gi|302337126|ref|YP_003802332.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634311|gb|ADK79738.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 132 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 2/90 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + L+ + L K G+ K + I +ILA + Sbjct: 8 IGRNIRSYRKACGLSQASLGEKVGVSYQQIQKYENGASS--ISAFQLGRIAEILAVPIDC 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 L ++ E L Sbjct: 66 FFHLDTESGAEAPPAYSSEIGDEFLRVSQD 95 >gi|291529971|emb|CBK95556.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I ++ + + + +A G+ +++ + R P ++ KI Sbjct: 14 ERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETG-----KREPPFATLLKIAEYFGTD 66 >gi|284989132|ref|YP_003407686.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062377|gb|ADB73315.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 90 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 5/62 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S ++ I + +T LA G+ + +R PS +I Sbjct: 6 SGDAVYNRIALLRAEQGVTRRELADALGVHYQTVGYLERGEYN-----PSLHLALRIAEF 60 Query: 65 TN 66 Sbjct: 61 FG 62 >gi|261493122|ref|ZP_05989658.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496455|ref|ZP_05992838.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307888|gb|EEY09208.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311210|gb|EEY12377.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 64 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + L+ LA G+ + +R R P+ +I K+ A N L Sbjct: 4 IRQFRRAIGLSQQELASVIGVTTGAIGFYERG-----LREPNLATIKKLAEALNCKPADL 58 Query: 73 LDLPF 77 + Sbjct: 59 YPVLE 63 >gi|260910500|ref|ZP_05917168.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] gi|260635342|gb|EEX53364.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] Length = 102 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 17/39 (43%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + E + ++ LT + LA K G + ++ + + Sbjct: 42 LGERLKEERKKSGLTQAQLAAKIGTKKSYISRIENGHAD 80 >gi|257065271|ref|YP_003144943.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792924|gb|ACV23594.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 272 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 2/106 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ EAI + LT LA K + + ++ + E + +L Sbjct: 2 KVSEAIQNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKL--LASVLGVPAV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + L D P T +P + + G Sbjct: 60 GLFDLPDAPACQCCGTPFDVPNMPFGTNADGTENPDYCGWCYQNGE 105 >gi|254502687|ref|ZP_05114838.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438758|gb|EEE45437.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 88 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 23/49 (46%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 M++ KK+ A E+ L+ + + G+ ++ +++R +G Sbjct: 1 MSALDRKKLGAAFLAAREKRALSLRQVEERTGVSRSTIGRAERGHADGY 49 >gi|167749275|ref|ZP_02421402.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|167657768|gb|EDS01898.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|291556859|emb|CBL33976.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 122 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I ++ + + + +A G+ +++ + R P ++ KI Sbjct: 14 ERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETG-----KREPPFATLLKIAEYFGTD 66 >gi|327490617|gb|EGF22398.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] gi|328945826|gb|EGG39977.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 205 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKARGISQEGLADQFGVSRQAVSKWESEQS-----MPDLDKIISMSDYFAV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82 >gi|307324537|ref|ZP_07603744.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889781|gb|EFN20760.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 406 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 1/115 (0%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S K I + + + ++T LA ++G+ + K ++ + R + + + L Sbjct: 1 MSSKSIGDRLGELRRYRDITQEELAERSGVHVDTIRKLEQNVRQ-SARLGTLRMLARALD 59 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + + + + + G D + + Sbjct: 60 TELDRLLGQPTVTTELPDDDGGLIALRDAIQDISALPGVPADDFDEDPPAADDWM 114 >gi|260426660|ref|ZP_05780639.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421152|gb|EEX14403.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 215 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + + T A++AGL ++ +K + + P+ +++ K+ Sbjct: 34 DLGARVRELRKERDWTLEQAAKQAGLARSTLSKIENGQM-----SPTYDALKKLAVGLGI 88 Query: 68 TICQLLDLP 76 + QL P Sbjct: 89 GVPQLFTPP 97 >gi|320010701|gb|ADW05551.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 135 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +A+ ++ + LAR+AG+ +K + G P+ + ++ Sbjct: 37 DVGQAVHDRRAECGISQTELARRAGMTQPQVSKLEIGGT-----LPTVALLARLAR 87 >gi|302531579|ref|ZP_07283921.1| transcriptional regulator [Streptomyces sp. AA4] gi|302440474|gb|EFL12290.1| transcriptional regulator [Streptomyces sp. AA4] Length = 82 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + L LA AG+ T ++ +R R + ++ K Sbjct: 13 IGERVREFRNKAGLNQEQLAEAAGVHWTFVSQVERG-----LRNINLHNLLKFADGLGVN 67 Query: 69 I 69 Sbjct: 68 P 68 >gi|253577419|ref|ZP_04854735.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843219|gb|EES71251.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 76 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +R LT + LA + G+ + N + + P+ E FK+ + +L Sbjct: 18 IKQFRKRLGLTQNELAAECGVTRQTINCVENNRYD-----PTLELAFKLAKILQTKVDEL 72 Query: 73 LDLP 76 Sbjct: 73 FIYE 76 >gi|302875139|ref|YP_003843772.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307690235|ref|ZP_07632681.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302577996|gb|ADL52008.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 182 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + I I R+ + NLT LA G+ + ++ +R + P+ + KI Sbjct: 4 TSETISRNIKRIRQERNLTLDDLAILTGVSKSMLSEIERCT-----KSPTISVLEKICDG 58 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLY 94 N + QL + + Sbjct: 59 INVPLAQLTHTEMPQVSVITNDTVKNYSAW 88 >gi|226949637|ref|YP_002804728.1| hypothetical protein CLM_2574 [Clostridium botulinum A2 str. Kyoto] gi|226840892|gb|ACO83558.1| conserved domain protein [Clostridium botulinum A2 str. Kyoto] Length = 73 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + LT LA+K + + + +R PS + +I + Q+ Sbjct: 5 LKKLRLQFGLTQGELAQKLKVARPTISNIEREIYT-----PSGSLMIRIANFFGKPAEQI 59 Query: 73 LDLPFSDGRTT 83 Sbjct: 60 FFEDSVMQEEQ 70 >gi|78067487|ref|YP_370256.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968232|gb|ABB09612.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 233 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 6/135 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + KI AA + Sbjct: 35 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ ++ S P Sbjct: 90 VAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPA-AAEFHELRIAPLHTEP 148 Query: 129 GIYAIQTQDTRHKTQ 143 G Sbjct: 149 GARRAPGTTVNLVVS 163 >gi|50365272|ref|YP_053697.1| Cro/CI family transcriptional regulator [Mesoplasma florum L1] gi|50363828|gb|AAT75813.1| transcriptional regulator Cro/CI family [Mesoplasma florum L1] Length = 75 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 10/76 (13%) Query: 1 MTSFSHKK-----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M +S + I + ++ LT L + G+ + +R R + Sbjct: 1 MKKYSGEDDLILIIAANLRKIRSSKGLTQEELGFRCGISKNYISDFERG-----RRNITI 55 Query: 56 ESIFKILAATNETICQ 71 + + K++ T + Sbjct: 56 KILQKLIEGLETTPQE 71 >gi|323703828|ref|ZP_08115464.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323531185|gb|EGB21088.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 133 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 9/112 (8%) Query: 11 EAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E+H + LA G+ + + R P T ++ K+ + Sbjct: 5 DRLKHLREKHKPKIYQKELADAIGVSRQAITMWETGQ-----RIPDTVTLKKLADFFGVS 59 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 L +D E L + FD +K + + Sbjct: 60 T--DYLLGRTDIPNNVNDEPTPQELEKVLREANIAFDGAPLDEEDKEDVIEF 109 >gi|323693263|ref|ZP_08107481.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502746|gb|EGB18590.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + +T LA + + + + +R E P ++ KI + Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNE-----PDLNTLKKICFLFGVHM 65 Query: 70 CQL 72 Sbjct: 66 DDF 68 >gi|317500621|ref|ZP_07958840.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316897939|gb|EFV19991.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 151 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + +T LA + + + + +R E P ++ KI + Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNE-----PDLNTLKKICFLFGVHM 65 Query: 70 CQL 72 Sbjct: 66 DDF 68 >gi|239625605|ref|ZP_04668636.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519835|gb|EEQ59701.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 190 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + LT L+ + GL ++ +R E PS S+ KI + Sbjct: 2 LGTNIREYRKNKKLTIKELSERTGLSIGYISQVEREEAE-----PSLSSLRKIAREFDVP 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + L+D + T ++E+ + S F P Sbjct: 57 VYVLMDDHRNTHNLTIRREERLSARIKKSSVEYEFLTPLPSPN 99 >gi|222081796|ref|YP_002541161.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726475|gb|ACM29564.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 204 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WPSTESI 58 + + + NL+ + LA + G+ + ++ +R R R WP ++ Sbjct: 22 VGRRVRALRLERNLSLAELATRTGISIGALSQIERGMSSLRVRVIWPLAAAL 73 >gi|323487601|ref|ZP_08092891.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] gi|157816226|gb|ABV82119.1| HTH domain protein [Streptococcus parasanguinis] gi|198387264|gb|ACH87089.1| helix-turn-helix XRE-family-like protein [Escherichia coli] gi|323399100|gb|EGA91508.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] Length = 151 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + +T LA + + + + +R E P ++ KI + Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNE-----PDLNTLKKICFLFGVHM 65 Query: 70 CQL 72 Sbjct: 66 DDF 68 >gi|197284179|ref|YP_002150051.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194681666|emb|CAR40739.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 106 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 5/97 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + T LA+K G+ F++ +R + R + N Sbjct: 15 VGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVL-----LALYLNTP 69 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 I + + + K + + F Sbjct: 70 IYWFFEDCYVKKPSLNNKGIDKRNYVIAQATPDAFHY 106 >gi|253701031|ref|YP_003022220.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251775881|gb|ACT18462.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 104 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 5 SHKKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + + A+D + + LT +A K G+ S + + PS E + K Sbjct: 29 TLEDEFAALDVLLKARKAAGLTQEEVAAKMGVSQPSLARVEASLGS-HRHSPSLEMLRKY 87 Query: 62 LAATNE 67 AA N Sbjct: 88 AAAVNC 93 >gi|167838935|ref|ZP_02465712.1| aldehyde dehydrogenase-like protein [Burkholderia thailandensis MSMB43] Length = 170 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 5/75 (6%) Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78 ++ L+ LA++AG+ + + ++ + PS S+ K+L ++ + Sbjct: 2 KYGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPMSLAEFFTFEVG 56 Query: 79 DGRTTEKKEKEIPLL 93 + R+ + +P L Sbjct: 57 ENRSVVSRRAGMPNL 71 >gi|116334693|ref|YP_796220.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100040|gb|ABJ65189.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 120 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/99 (9%), Positives = 30/99 (30%), Gaps = 5/99 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + L+ LA + + S +K ++ P +++ + ++ +L Sbjct: 9 LSQLRRQAGLSQEQLASQVFVTRQSVSKWEQGETT-----PDLDTLISLATVLGVSLDEL 63 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + TE + + Sbjct: 64 VSGRSTATHQTETETTFDQPEPAGATTGHSMNFWEFLAN 102 >gi|227357946|ref|ZP_03842289.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|6453635|emb|CAB61440.1| mrpJ [Proteus mirabilis HI4320] gi|227161855|gb|EEI46884.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 107 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 5/97 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + T LA+K G+ F++ +R + R + N Sbjct: 16 VGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVL-----LALYLNTP 70 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 I + + + K + + F Sbjct: 71 IYWFFEDCYVKKPSLNNKGIDKRNYVIAQATPDAFHY 107 >gi|28870261|ref|NP_792880.1| transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853508|gb|AAO56575.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|331016477|gb|EGH96533.1| transcriptional regulator, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 212 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + R+ + L+ LAR G+ + + PS + + KI Sbjct: 26 DLIGPRVARNLQRLRSKRYLSMDALARLTGVSRAMLAQIESGRSV-----PSIKVLCKIA 80 Query: 63 AATNET 68 + Sbjct: 81 KGLKVS 86 >gi|62179770|ref|YP_216187.1| hypothetical protein SC1200 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167554065|ref|ZP_02347806.1| helix-turn-helix domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|62127403|gb|AAX65106.1| hypothetical protein SCH_1200 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205321656|gb|EDZ09495.1| helix-turn-helix domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 102 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + LT + +A + G T+ + + G + PS ++ K AT Sbjct: 44 AARKEAGLTQAEVAERMGTKATAITRMESNLAAGVS-GPSFTTLKKFAQATG 94 >gi|34496365|ref|NP_900580.1| hypothetical protein CV_0910 [Chromobacterium violaceum ATCC 12472] gi|34102218|gb|AAQ58584.1| hypothetical protein CV_0910 [Chromobacterium violaceum ATCC 12472] Length = 167 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 6/78 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + + LA +GL + + +R S ES+ + + +L Sbjct: 3 IQKLRLQRGWSQQQLADLSGLSVRTIQRIERGQGA------SVESLKSLASVFEIDFSEL 56 Query: 73 LDLPFSDGRTTEKKEKEI 90 P TT Sbjct: 57 NKEPAMMDPTTPDAIAAP 74 >gi|70725312|ref|YP_252226.1| hypothetical protein SH0311 [Staphylococcus haemolyticus JCSC1435] gi|68446036|dbj|BAE03620.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 67 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R + LA++AG+ + + +R PS + KI NE + Sbjct: 3 NRLKELRARDGFNQTQLAKQAGISRQTVSLIERNDF-----MPSILTAVKIARIFNEPVE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 NVFIFEE 64 >gi|219667028|ref|YP_002457463.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537288|gb|ACL19027.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 277 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 17/35 (48%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 ++ + I R + T LARK G+ + +K + Sbjct: 4 ELAKNICRYRKEKGFTQEELARKLGVTFQAVSKWE 38 >gi|328948780|ref|YP_004366117.1| hypothetical protein Tresu_1938 [Treponema succinifaciens DSM 2489] gi|328449104|gb|AEB14820.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 151 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 5/86 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 ++ + I + + +T LA + + + + +R E P + KI Sbjct: 6 TNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNE-----PDLNMLKKICFL 60 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEI 90 + + T EKKEK Sbjct: 61 FGVNMDDFAKEVITKMETYEKKEKRQ 86 >gi|324327242|gb|ADY22502.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 374 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 14/194 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 N +I +L+ + K F ++ + Sbjct: 56 YFNISIDELISYTPQMEQEDIKDLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPL--- 112 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182 I + + + + L + D L+ + + Sbjct: 113 ---LIQIGILFINHHMLTEDTDKRIEMLEEAMYLFSRVQEE--SDDVSLVKEAVSFQATC 167 Query: 183 KVLISRRGRSIDLM 196 +++++ ++ L+ Sbjct: 168 YLILNKPNEALQLL 181 >gi|292557941|gb|ADE30942.1| Helix-turn-helix type 3 [Streptococcus suis GZ1] Length = 149 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 5/86 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 ++ + I + + +T LA + + + + +R E P + KI Sbjct: 6 TNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNE-----PDLNMLKKICFL 60 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEI 90 + + T EKKEK Sbjct: 61 FGVNMDDFAKEVITKMETYEKKEKRQ 86 >gi|228905139|ref|ZP_04069146.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] gi|228854461|gb|EEM99112.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] Length = 145 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + L+ LA + G ++ R P +++ KI + Sbjct: 2 LGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQ-----REPDYDTLKKIADFFEVS 56 >gi|228935113|ref|ZP_04097940.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824478|gb|EEM70283.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 145 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + L+ LA + G ++ R P +++ KI + Sbjct: 2 LGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQ-----REPDYDTLKKIADFFEVS 56 >gi|269124926|ref|YP_003298296.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309884|gb|ACY96258.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 145 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I +R ++ LA +G+ ++ +R R PS E + +I + Sbjct: 9 IGEYIREQRQRAKISLRQLADVSGISNPYLSQIERG-----LRKPSAEILQQIAKGLRIS 63 >gi|269955944|ref|YP_003325733.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304625|gb|ACZ30175.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 266 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 5/137 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R+ E +T LA++AG+D + + R PS ++ ++ A + Sbjct: 11 LRRVREGAAMTQRELAQRAGVDQATIAGIETG-----RRMPSLPTLVRLAEAAGRQLRVE 65 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 ++ +D ++ + + + V P + A Sbjct: 66 IEPLDADVAELVGDVDQVAQVRDAVGAALAYVFETGPEFDPPPYRVEGPAAVALLGAPMA 125 Query: 133 IQTQDTRHKTQDTSMLP 149 S+ Sbjct: 126 KPPLHIALADTTHSVEW 142 >gi|156741559|ref|YP_001431688.1| XRE family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232887|gb|ABU57670.1| transcriptional regulator, XRE family [Roseiflexus castenholzii DSM 13941] Length = 119 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M SF ++++ E I R +R LT + L + G+ + + + R E++ Sbjct: 1 MPSF-NERVGEVIKRKRQRDRLTQAELGGRIGVSGSYISSIENGQSSA--RIADIEALAV 57 Query: 61 ILAATNET 68 + T Sbjct: 58 VFRTTAFD 65 >gi|115359884|ref|YP_777022.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|171321325|ref|ZP_02910285.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|115285172|gb|ABI90688.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] gi|171093407|gb|EDT38593.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 95 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 L+ + +A + G + + +R G+ PS +++ K AA Sbjct: 37 AARRDAGLSQADVAERMGTKAPAVTRLERALATGQ-HSPSIDTLRKYAAACG 87 >gi|90021251|ref|YP_527078.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950851|gb|ABD80866.1| conserved hypothetical protein [Saccharophagus degradans 2-40] Length = 175 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + R+ + L+ LAR+A + ++ + ++ + PS S+ +IL+A + Sbjct: 2 GRKLMRLRQDRGLSQRELARRAEMTNSTLSMIEQGKV-----SPSVASLERILSAIPIS 55 >gi|52079357|ref|YP_078148.1| putative DNA binding protein [Bacillus licheniformis ATCC 14580] gi|52784719|ref|YP_090548.1| YazB [Bacillus licheniformis ATCC 14580] gi|319646859|ref|ZP_08001088.1| YazB protein [Bacillus sp. BT1B_CT2] gi|52002568|gb|AAU22510.1| putative DNA binding protein [Bacillus licheniformis ATCC 14580] gi|52347221|gb|AAU39855.1| YazB [Bacillus licheniformis ATCC 14580] gi|317391447|gb|EFV72245.1| YazB protein [Bacillus sp. BT1B_CT2] Length = 68 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 5/63 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R+ + LA+ G+ + ++ PS KI + Sbjct: 3 NRVRELRARYGYSQEALAKAIGVTRQTVAAIEKGNYI-----PSLLLALKICKEFQLKME 57 Query: 71 QLL 73 + Sbjct: 58 DVF 60 >gi|84515262|ref|ZP_01002624.1| DNA binding protein, putative [Loktanella vestfoldensis SKA53] gi|84510545|gb|EAQ07000.1| DNA binding protein, putative [Loktanella vestfoldensis SKA53] Length = 299 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 4/110 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +R + + LAR G+D ++ ++ + R P+ + + + AA + Sbjct: 16 DRLVAAMDRTGIKQAALARWTGVDRSTLSQLLKDQG---ARLPNAQLVAECSAALGVSAD 72 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119 LL L + I + + + G K V Sbjct: 73 WLLGLSDFPEQAAALVAAAISMPEASRAMGDDQIFAWHQEAAGYKIRHVP 122 >gi|331085764|ref|ZP_08334847.1| hypothetical protein HMPREF0987_01150 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406687|gb|EGG86192.1| hypothetical protein HMPREF0987_01150 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 108 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + I + E++ LT LA K G+ S ++ +R P I I Sbjct: 1 MNENTLGGRIAELLEKNGLTQRELAEKVGVTEVSMSRYISN-----DRTPKGPVIANIAT 55 Query: 64 ATNET 68 A + T Sbjct: 56 ALHTT 60 >gi|321314262|ref|YP_004206549.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] gi|320020536|gb|ADV95522.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] Length = 129 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 6/119 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + ++ + + +A G+ T++ ++ R P E++ KI T+ Sbjct: 6 RLKKLRDGKKMNQQEVADNLGIARTTYASYEQG-----KREPDHETLVKIANFFEVTV-D 59 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 L + + +EK + P F D+ F + + Sbjct: 60 YLLGHQPNSKPVVHEEKAPYKVTDDPDLQIAFKDASDFSEEARRQAIDFINYLKEKEKA 118 >gi|315281167|ref|ZP_07869853.1| transcriptional regulator [Listeria marthii FSL S4-120] gi|313615189|gb|EFR88648.1| transcriptional regulator [Listeria marthii FSL S4-120] Length = 67 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E ++ + LA+ + + + ++ PS E KI + ++ ++ Sbjct: 7 LKNLREERDIAQNELAKALEVSRQTIHAIEKGKYN-----PSLELSLKIAKYFHLSVEEI 61 Query: 73 LD 74 + Sbjct: 62 FN 63 >gi|256848879|ref|ZP_05554313.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256714418|gb|EEU29405.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 115 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + KK+ I + ++ NL + L + + + P ++++ Sbjct: 1 MKDYDRKKLANNIKTLRKQKNLNQAELGEILHVSQQTIGSWETGRAI-----PGSDTLKI 55 Query: 61 ILAATNETICQ 71 + + + Sbjct: 56 LADYFQVSTDE 66 >gi|240169634|ref|ZP_04748293.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 471 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 14/38 (36%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + R+ E LT LAR L + N+ + Sbjct: 7 GARLRRLREEQGLTQMALARALDLSTSYVNQLENDQRP 44 >gi|255505869|ref|ZP_05348580.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265478|gb|EET58683.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 137 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 5/111 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + +I I R ++ L + + KA L + +R PS E I ++ Sbjct: 31 TLDYNEIGRRIARRRKQLGLKQAEVEEKADLSYKYLSNIERSISI-----PSIEVIMRLA 85 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 A + T + L K EI + P S Sbjct: 86 VALDTTPDEFLVGTLQTENEEWKNVAEILRNFDPKKLSLAKNFLIWLSEQE 136 >gi|147921238|ref|YP_684949.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] gi|110620345|emb|CAJ35623.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] Length = 68 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + RHN+T LA+K G+ + ++ + PS F++ I + Sbjct: 5 LKELRARHNMTQEDLAQKVGVSRQTIVAIEKQKYD-----PSLSLAFRLARCFGVKIEDI 59 Query: 73 LDLP 76 + Sbjct: 60 FEED 63 >gi|126179337|ref|YP_001047302.1| hypothetical protein Memar_1391 [Methanoculleus marisnigri JR1] gi|125862131|gb|ABN57320.1| protein of unknown function DUF955 [Methanoculleus marisnigri JR1] Length = 342 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 17/42 (40%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 I E I L+ LA K GL + +K + + R+ Sbjct: 3 IGERIKSARIGAGLSQRNLAEKMGLSAMAISKYENGEVTPRS 44 >gi|189501325|ref|YP_001960795.1| XRE family plasmid maintenance system antidote protein [Chlorobium phaeobacteroides BS1] gi|189496766|gb|ACE05314.1| plasmid maintenance system antidote protein, XRE family [Chlorobium phaeobacteroides BS1] Length = 157 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 6/95 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S + + R ++ LA G+ P +K + + E+I K+ Sbjct: 41 KRSQAIALRVLRSLRSRK-MSQKDLAEMMGVTPQHISKIVKGREN-----LTLETIAKLE 94 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 AA + + + + P Sbjct: 95 AALGIALMDVPCYEERQRVCVSDESIFPHVQTAPQ 129 >gi|317123219|ref|YP_004097331.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] gi|315587307|gb|ADU46604.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] Length = 89 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 8/64 (12%) Query: 3 SFSH-KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + +++ A+ L+ LA +AG+ ++ + G + K+ Sbjct: 1 MLTTVRELGAALRDARRASGLSQEALAERAGVSRPWLSRLETAANPG-------AELRKV 53 Query: 62 LAAT 65 L Sbjct: 54 LDVL 57 >gi|306834504|ref|ZP_07467617.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304423306|gb|EFM26459.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 157 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 5/74 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + LT LA K + + + + + + + ++ ++ Sbjct: 1 MNRLKELRKEKKLTQKELADKINVSKITVLRWENGERQIKP-----DKAQQLADFFGVSV 55 Query: 70 CQLLDLPFSDGRTT 83 LL + Sbjct: 56 GYLLGYSEYNNSQE 69 >gi|285017009|ref|YP_003374720.1| hypothetical protein XALc_0188 [Xanthomonas albilineans GPE PC73] gi|283472227|emb|CBA14733.1| hypothetical protein XALc_0188 [Xanthomonas albilineans] Length = 270 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + R+ + +T LA G + + + R P + I A +I Sbjct: 41 HNLKRLRQARGMTQEELALACGWGGQSRVANYES--NSPKAREPKLSELSAIAEALCVSI 98 Query: 70 CQLLDLPF 77 +LL Sbjct: 99 TELLTDHD 106 Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 4/88 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + E + A A + ++ G N+ P+ + I Sbjct: 125 IGDRLKDLREAAGMNQPEFAAIAKTSKQYVGRLEK----GYNKDPNPKFIELWARHFGVR 180 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + + ++ ++ ++ Sbjct: 181 MEWITAGKLPKDAGSKDVQRPAEVITAS 208 >gi|261212913|ref|ZP_05927197.1| error-prone repair protein UmuD [Vibrio sp. RC341] gi|260837978|gb|EEX64655.1| error-prone repair protein UmuD [Vibrio sp. RC341] Length = 135 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 + + K SM + GD+LI++ ++ D ++ G+ V Sbjct: 26 SIDLDGLLIQHPSATFIGKASGDSMQGVGIFDGDLLIVDRHLEAMNHDVIVANFN-GEFV 84 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE 208 K+L RR L+S N + Sbjct: 85 CKILDIRRR---LLLSANEKMQPVAIH 108 >gi|260184880|ref|ZP_05762354.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289445548|ref|ZP_06435292.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289418506|gb|EFD15707.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] Length = 256 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 18/185 (9%), Positives = 43/185 (23%), Gaps = 12/185 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E + + + LA G+ + +R R P ++ K+ Sbjct: 1 MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGA-----RKPHKSTVQKVEN 55 Query: 64 ATNETICQLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 L + E + + + G Sbjct: 56 GLGLPPGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQ 115 Query: 118 VGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + V + + + + + + + RL+ R Sbjct: 116 LDVIKSVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLR 175 Query: 177 TGDIV 181 + Sbjct: 176 ALEAT 180 >gi|223983578|ref|ZP_03633760.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] gi|223964464|gb|EEF68794.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] Length = 353 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 1/65 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATN 66 KI E I + + LT +A G+ + NK + P + K T Sbjct: 2 KINEVIRQRRKELGLTQDRVAELLGVSAPAVNKWENGNSYPDITLLPPLARLLKTDLNTL 61 Query: 67 ETICQ 71 + Sbjct: 62 LSFQD 66 >gi|206576130|ref|YP_002237033.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|206565188|gb|ACI06964.1| DNA-binding protein [Klebsiella pneumoniae 342] Length = 189 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 2/87 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I R+ + ++ + L++ +G+ + +K + R + ++I L Sbjct: 15 NIGSKIRRLRQSRGISLNDLSKLSGVSKGALSKLESGSSS--PRVDTLDAIATALRLPVG 72 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLY 94 + + E + Sbjct: 73 DLLSGGSRMYPRFEKHRPVPGEYSQMM 99 >gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] Length = 295 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 15/38 (39%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 E + + ++ ++ LA K G+ + K + Sbjct: 7 ENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIP 44 >gi|154503571|ref|ZP_02040631.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260589920|ref|ZP_05855833.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795671|gb|EDN78091.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260539727|gb|EEX20296.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 128 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 4/87 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + ++ S L+ K G + ++ ++ GIE + K+ + I L Sbjct: 12 IRKKRKELGISQSELSEKLGTSQQTISRIEKAGIENIP----CNLLIKLADIFHVPIDIL 67 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSG 99 + ++ +++ +E + Sbjct: 68 IYEEQNNLFSSQGEELWEIYKQLDEAN 94 >gi|146302601|ref|YP_001197192.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146157019|gb|ABQ07873.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 133 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 1 MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 M++ + + I I R+ E + LA G + + + Sbjct: 1 MSTLNRPRNIGRNISRIRELRGMKQGALADAIGTSQQTISSIE 43 >gi|15801392|ref|NP_287409.1| hypothetical protein Z1932 [Escherichia coli O157:H7 EDL933] gi|12514864|gb|AAG56021.1|AE005334_8 orf; hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 111 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + NLT + LA+++G+ +K +R PS + ++ A N Sbjct: 19 DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTS-----SPSATILSRLANALNI 73 Query: 68 TICQLLDLPFSDGR 81 T+ +L Sbjct: 74 TLSKLFAELEMQQN 87 >gi|21222193|ref|NP_627972.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|256786717|ref|ZP_05525148.1| regulatory protein [Streptomyces lividans TK24] gi|289770612|ref|ZP_06529990.1| regulatory protein [Streptomyces lividans TK24] gi|10432486|emb|CAC10320.1| putative regulatory protein [Streptomyces coelicolor A3(2)] gi|289700811|gb|EFD68240.1| regulatory protein [Streptomyces lividans TK24] Length = 449 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 6/66 (9%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + R+ +T LA P GR R PS E++ + Sbjct: 7 RNDIGRRVQRLRAERGMTQRQLAE-----PAYTPAYISTLEAGRVR-PSDEALRHLADRL 60 Query: 66 NETICQ 71 + Sbjct: 61 GVGYEE 66 >gi|15608269|ref|NP_215645.1| transcriptional regulator protein [Mycobacterium tuberculosis H37Rv] gi|15840567|ref|NP_335604.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31792323|ref|NP_854816.1| transcriptional regulator protein [Mycobacterium bovis AF2122/97] gi|121637061|ref|YP_977284.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660915|ref|YP_001282438.1| putative transcriptional regulator protein [Mycobacterium tuberculosis H37Ra] gi|148822343|ref|YP_001287097.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167969266|ref|ZP_02551543.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|215402959|ref|ZP_03415140.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215410750|ref|ZP_03419558.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215426424|ref|ZP_03424343.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215445295|ref|ZP_03432047.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218752816|ref|ZP_03531612.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219557015|ref|ZP_03536091.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224989534|ref|YP_002644221.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799830|ref|YP_003032831.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254231403|ref|ZP_04924730.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C] gi|254364034|ref|ZP_04980080.1| hypothetical transcriptional regulator protein [Mycobacterium tuberculosis str. Haarlem] gi|254550127|ref|ZP_05140574.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186058|ref|ZP_05763532.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260200171|ref|ZP_05767662.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260204374|ref|ZP_05771865.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289442559|ref|ZP_06432303.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289446719|ref|ZP_06436463.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289555084|ref|ZP_06444294.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289569125|ref|ZP_06449352.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289573782|ref|ZP_06454009.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289744873|ref|ZP_06504251.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289749665|ref|ZP_06509043.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289757219|ref|ZP_06516597.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|289761269|ref|ZP_06520647.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|294993308|ref|ZP_06798999.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297633669|ref|ZP_06951449.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297730656|ref|ZP_06959774.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298524627|ref|ZP_07012036.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|306775285|ref|ZP_07413622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306781801|ref|ZP_07420138.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306788203|ref|ZP_07426525.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792532|ref|ZP_07430834.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306967199|ref|ZP_07479860.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|307079114|ref|ZP_07488284.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307083678|ref|ZP_07492791.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657986|ref|ZP_07814866.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|2117223|emb|CAB09040.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13880746|gb|AAK45418.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31617911|emb|CAD94021.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium bovis AF2122/97] gi|121492708|emb|CAL71177.1| Probable transcriptional regulator protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600462|gb|EAY59472.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C] gi|134149548|gb|EBA41593.1| hypothetical transcriptional regulator protein [Mycobacterium tuberculosis str. Haarlem] gi|148505067|gb|ABQ72876.1| putative transcriptional regulator protein [Mycobacterium tuberculosis H37Ra] gi|148720870|gb|ABR05495.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224772647|dbj|BAH25453.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321333|gb|ACT25936.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289415478|gb|EFD12718.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289419677|gb|EFD16878.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289439716|gb|EFD22209.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289538213|gb|EFD42791.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289542879|gb|EFD46527.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289685401|gb|EFD52889.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289690252|gb|EFD57681.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289708775|gb|EFD72791.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|289712783|gb|EFD76795.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|298494421|gb|EFI29715.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|308216217|gb|EFO75616.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308325442|gb|EFP14293.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308335215|gb|EFP24066.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339022|gb|EFP27873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308355148|gb|EFP43999.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308363022|gb|EFP51873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308366671|gb|EFP55522.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323720411|gb|EGB29505.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326904644|gb|EGE51577.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328459575|gb|AEB04998.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 486 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + R+ + LT LA+ L + N+ + Sbjct: 19 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRP 56 >gi|84501262|ref|ZP_00999467.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] gi|84390553|gb|EAQ03041.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] Length = 213 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 21/37 (56%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 ++ + I ++ E LT +A ++GL ++ +K +R Sbjct: 22 ELGQRIRQLREARGLTLQTIADRSGLAISTISKIERG 58 >gi|146280227|ref|YP_001170384.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] gi|145558468|gb|ABP73079.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] Length = 652 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I I R +R LT GLA + + + + +R P ++++ + A Sbjct: 12 RIGANIARARQRRGLTLDGLAELSCVSRATISALERGHGN-----PGVQTLWSLADALG 65 >gi|308370626|ref|ZP_07422163.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308374223|ref|ZP_07435239.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308375371|ref|ZP_07443665.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308376634|ref|ZP_07439483.2| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308378845|ref|ZP_07484047.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308331404|gb|EFP20255.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308342691|gb|EFP31542.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308346576|gb|EFP35427.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308350499|gb|EFP39350.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308359101|gb|EFP47952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] Length = 478 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + R+ + LT LA+ L + N+ + Sbjct: 11 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRP 48 >gi|331088392|ref|ZP_08337309.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium 3_1_46FAA] gi|330408267|gb|EGG87747.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium 3_1_46FAA] Length = 336 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I +++ + LA + G+ + +K + G P + I ++ + Sbjct: 3 LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAV-----PDLQRILQMSELFGVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 LL T + E Sbjct: 58 TDYLLKDEMQAENITYHESTESYAEPL 84 >gi|315648384|ref|ZP_07901483.1| putative transcriptional regulator [Paenibacillus vortex V453] gi|315276078|gb|EFU39424.1| putative transcriptional regulator [Paenibacillus vortex V453] Length = 420 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I R+ ++ +T LA G+ + +K + Sbjct: 9 GNNIVRLRKQLGMTQEQLANGLGVSYQAVSKWENGQT 45 >gi|254562729|ref|YP_003069824.1| hypothetical protein METDI4363 [Methylobacterium extorquens DM4] gi|254270007|emb|CAX25993.1| Hypothetical protein METDI4363 [Methylobacterium extorquens DM4] Length = 70 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 1/61 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT ++ + + + A +AG+ N +R + + + Sbjct: 1 MTDLTYDDVRARLSTAIREAG-SQKAFAEQAGVSRPYLNDVIAGRRPAGDRVLAALDLRR 59 Query: 61 I 61 + Sbjct: 60 V 60 >gi|215430004|ref|ZP_03427923.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289753196|ref|ZP_06512574.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289693783|gb|EFD61212.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 486 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + R+ + LT LA+ L + N+ + Sbjct: 19 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRP 56 >gi|213970379|ref|ZP_03398508.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] gi|301381163|ref|ZP_07229581.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato Max13] gi|302062403|ref|ZP_07253944.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato K40] gi|302132576|ref|ZP_07258566.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924850|gb|EEB58416.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] Length = 212 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + R+ + L+ LAR G+ + + PS + + KI Sbjct: 26 DLIGPRVARNLQRLRSKRYLSMDALARLTGVSRAMLAQIESGRSV-----PSIKVLCKIA 80 Query: 63 AATNET 68 + Sbjct: 81 KGLKVS 86 >gi|209695276|ref|YP_002263205.1| DNA-binding transcriptional regulator HipB [Aliivibrio salmonicida LFI1238] gi|208009228|emb|CAQ79486.1| HTH-type transcriptional regulator HipB [Aliivibrio salmonicida LFI1238] Length = 83 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ K++ + + +HNLT + LA+K G+ ++ + + +++FK Sbjct: 1 MMIYNPKQLANYLKLIRTKHNLTQTELAKKVGVKQSTLSSFENH-----PETTQLQTLFK 55 Query: 61 ILAATNET 68 IL A Sbjct: 56 ILHALEVH 63 >gi|194017594|ref|ZP_03056205.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194010866|gb|EDW20437.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 71 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 5/75 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + T LA K G+ + + S + F+I Sbjct: 2 EIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKY-----SLSLKLAFQIARTFEV 56 Query: 68 TICQLLDLPFSDGRT 82 + + + Sbjct: 57 DLYDVFQEVDKEEPQ 71 >gi|168763653|ref|ZP_02788660.1| putative bacteriophage CI repressor protein [Escherichia coli O157:H7 str. EC4501] gi|217329478|ref|ZP_03445558.1| putative bacteriophage CI repressor protein [Escherichia coli O157:H7 str. TW14588] gi|261227077|ref|ZP_05941358.1| hypothetical protein EscherichiacoliO157_21146 [Escherichia coli O157:H7 str. FRIK2000] gi|261254667|ref|ZP_05947200.1| hypothetical protein EscherichiacoliO157EcO_02435 [Escherichia coli O157:H7 str. FRIK966] gi|189366252|gb|EDU84668.1| putative bacteriophage CI repressor protein [Escherichia coli O157:H7 str. EC4501] gi|217317917|gb|EEC26345.1| putative bacteriophage CI repressor protein [Escherichia coli O157:H7 str. TW14588] gi|323190793|gb|EFZ76062.1| bacteriophage CI repressor helix-turn-helix domain protein [Escherichia coli RN587/1] Length = 129 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 1 MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M + + E +D ++++H+L+ S LAR AG+ +S N K+ G + +S Sbjct: 1 MDMRKKQYDTPLAERLDTISQQHHLSGSDLARIAGVGRSSVNAWKKRGTISK------DS 54 Query: 58 IFKILAATNETICQLLDLPFSDGRTT 83 KI ATN ++ LL R Sbjct: 55 AAKIAEATNVSLSWLLTGKEDTNREA 80 >gi|157690974|ref|YP_001485436.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157679732|gb|ABV60876.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 71 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 13/37 (35%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 +I I + + T LA K G+ + + Sbjct: 2 EIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENG 38 >gi|153840613|ref|ZP_01993280.1| LexA repressor [Vibrio parahaemolyticus AQ3810] gi|149745725|gb|EDM56855.1| LexA repressor [Vibrio parahaemolyticus AQ3810] Length = 164 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 3/111 (2%) Query: 92 LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150 LL + G G G E + D + SM + Sbjct: 56 LLEDAANDEQGLPLIGQVAAGEPILAQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIG 115 Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201 GD+L ++ V G + + D+ K L + G ++ L + N Sbjct: 116 IMDGDLLAVHKTQDVRDGQVV-VARVDDDVTVKRLERK-GSTVLLHAENEE 164 >gi|118574103|sp|Q8TZX4|Y1851_PYRFU RecName: Full=Putative HTH-type transcriptional regulatory protein PF1851 Length = 315 Score = 44.0 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 16/37 (43%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 E + + E++ + + LA G+ S + ++ Sbjct: 128 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEG 164 >gi|326386490|ref|ZP_08208113.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209151|gb|EGD59945.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 204 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + LT + LA GL ++ +R E PS +++ + +A Sbjct: 23 RLGQQIRALRRDRGLTLAHLAETTGLSLGLVSQIERGLSE-----PSVKALHLLASALGV 77 Query: 68 TICQLLDLPF 77 T+ Sbjct: 78 TVGWFFRDDG 87 >gi|326390755|ref|ZP_08212308.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993149|gb|EGD51588.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 71 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + + LT + +A+K G+ TS+ + PS + KI Sbjct: 4 YLKKARKEAGLTQAEIAKKVGIARTSYTNIELGIKN-----PSFDVATKIKRVLRVNNDD 58 Query: 72 LL 73 + Sbjct: 59 IF 60 >gi|310767097|gb|ADP12047.1| Predicted transcriptional regulator [Erwinia sp. Ejp617] Length = 187 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 16/162 (9%), Positives = 46/162 (28%), Gaps = 10/162 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58 + +++ + + + + LA G+ S ++ +R + ++ Sbjct: 6 TEQRLARRLAELRLEKSWSLETLAELTGISRASLSRIERAETSPTATLLNRLCNAYGLTM 65 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++L+ + QLL + + P G + + Sbjct: 66 SRLLSEVEQGGMQLLRADSQSVWHDAQSGYRRRSVSPPAQAFHAELVEARLDGGARIDY- 124 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 +P + I+ + + +GD L + Sbjct: 125 DMPSLAGLEQHIWMLGG---VLEFTMDERHWRLEQGDCLRFH 163 >gi|296120086|ref|ZP_06838640.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] gi|295967240|gb|EFG80511.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] Length = 182 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 2/140 (1%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETI 69 + + ++ +T LA AGL T +R G + P+ +++K+ A Sbjct: 19 QNLRKIRRSRGVTQQALAEIAGLSRTQVCNLERNENNSGTSADPALSTVYKLALALEVPP 78 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 LL + + PS + G D T+ + G Sbjct: 79 VLLLPQSADMVNSVCATTSTRAVAQKIPSATVGASDMRNTKFRRGTRTIP-EQQTLRKAG 137 Query: 130 IYAIQTQDTRHKTQDTSMLP 149 + + + P Sbjct: 138 SLVSEDDGKLETSMGEELRP 157 >gi|271965421|ref|YP_003339617.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508596|gb|ACZ86874.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 77 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 6/82 (7%) Query: 3 SFSHKKIWEAIDRMA-ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ AI + +T + LA + G+ + ++ PS E F+I Sbjct: 1 MVKPTRVTNAIRALRFAHDEMTQAELADRVGVTRQTIIAIEQGRY-----SPSLEMAFRI 55 Query: 62 LAATNETICQLLDLPFSDGRTT 83 + + P ++G + Sbjct: 56 ARVFRVGLDDVFQYPDTEGDPS 77 >gi|226311800|ref|YP_002771694.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226094748|dbj|BAH43190.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 183 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 7/139 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + +++ I + + LT L+ K+G + ++ +R + S+ KI Sbjct: 2 EHVYKKIRALRIQQELTLKDLSEKSGFSVSFLSQVERGNS-----SLAITSLQKIAECLG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I T + L S G FP + V Sbjct: 57 VPI--TYFFEVDKDVTYHTPIAKRKTLQIEGSPVKYIRIGGNFPDRALEPLLNVLPPGQT 114 Query: 127 HNGIYAIQTQDTRHKTQDT 145 + + ++ + + Sbjct: 115 KHVAFQHPGEEFYYVVKGC 133 >gi|168177975|ref|ZP_02612639.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182671147|gb|EDT83121.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 130 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 5/90 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ L+ L K + + +K + P E + + ++ +L Sbjct: 7 LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + T + S Sbjct: 62 VMDVKAKESTKTEPLVMNRFETIIDSIDRE 91 >gi|167758980|ref|ZP_02431107.1| hypothetical protein CLOSCI_01326 [Clostridium scindens ATCC 35704] gi|167663387|gb|EDS07517.1| hypothetical protein CLOSCI_01326 [Clostridium scindens ATCC 35704] Length = 197 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 12/81 (14%) Query: 140 HKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGD---IVAKVLISRRGRS 192 T SM P+ GD++++N A GD ++ KP+ + K ++ G + Sbjct: 53 VSTVGDSMNPVLHNGDVVLVNRIVYNATTPKRGDIIVFKPKGNENAHYYIKRIVGLPGET 112 Query: 193 IDLMSLNCCYPVDTVEMSDIE 213 ++++ N Y ++ +E Sbjct: 113 VEII-ENRIY----IDGEKLE 128 >gi|170722756|ref|YP_001750444.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760759|gb|ACA74075.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 76 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 6/67 (8%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + H + I + ++ A + G T ++ + G PS +I + Sbjct: 8 PALQH-QFGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGAN-----PSINAIKVL 61 Query: 62 LAATNET 68 A + Sbjct: 62 ADALGVS 68 >gi|67078337|ref|YP_245955.1| hypothetical protein pE33L54_0011 [Bacillus cereus E33L] gi|66970643|gb|AAY60617.1| hypothetical protein pE33L54_0011 [Bacillus cereus E33L] Length = 81 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R +++ +T LA+K+G+ ++ ++ + P+ ++ KI+ A + Sbjct: 17 IARFLDKNGVTQQELAKKSGVSKSTISRICQGDAFA----PTMKNAQKIVRALKIITKKD 72 Query: 73 LDLPFSDG 80 Sbjct: 73 NIHYDDFW 80 >gi|329115049|ref|ZP_08243804.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] gi|326695492|gb|EGE47178.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] Length = 531 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ +R LT + LA + P+ N+ +R R + K+ + Sbjct: 71 GPRLRQLRQRETLTQANLAEILDISPSYLNQLERNH-----RPLPHHLLQKLCERFGLSP 125 Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92 + + ++ P+ Sbjct: 126 AWFSNTKEAHTVQAMRETMADPV 148 >gi|309774841|ref|ZP_07669862.1| transcriptional regulator, XRE family [Erysipelotrichaceae bacterium 3_1_53] gi|308917399|gb|EFP63118.1| transcriptional regulator, XRE family [Erysipelotrichaceae bacterium 3_1_53] Length = 103 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 2/101 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + ++HNLT LA+KA + ++ N R P+ E++ K + T Sbjct: 4 LEKLKFLMKQHNLTEYKLAQKADVAQSTINSLFRKNN--LPTIPTLEALLKAMDMTLSEF 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 L + ++ L+ + F + Sbjct: 62 FYEEALMKKHELEEQNLLRKWELMTKEQKQAILKFIDLLIS 102 >gi|290511290|ref|ZP_06550659.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] gi|289776283|gb|EFD84282.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] Length = 154 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + + + ++ A + G + ++ +R G S ++I Sbjct: 1 MNMTLRKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55 Query: 61 ILAATNETICQ 71 + A + Q Sbjct: 56 LANALSVEPWQ 66 >gi|255014195|ref|ZP_05286321.1| putative regulatory protein [Bacteroides sp. 2_1_7] gi|298374673|ref|ZP_06984631.1| regulatory protein [Bacteroides sp. 3_1_19] gi|298269041|gb|EFI10696.1| regulatory protein [Bacteroides sp. 3_1_19] Length = 82 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 7/65 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + +T + LA K G++ + + P+ E++ KI A + + Sbjct: 4 RIKEVIKEKGMTITELADKMGINRVNLSNMVNGN-------PTVETLNKIADAIGCPVTE 56 Query: 72 LLDLP 76 L + P Sbjct: 57 LFEQP 61 >gi|271967742|ref|YP_003341938.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270510917|gb|ACZ89195.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 291 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 16/180 (8%), Positives = 48/180 (26%), Gaps = 11/180 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+++ ++R+ E L+ + +A + G T+ + + + + + Sbjct: 11 HRRLITELNRLRESSGLSRAEVAERIGSTDTTVWRYETGLTRPKP-----SDVAALTDVY 65 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 T L ++ P + + VP + Sbjct: 66 GVTGEARDSLIQMARDARKRGWWHRHRQALKPGFDSYIGLEAEASVVRSYEPLVVPGLMQ 125 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIVAKV 184 A+ + + ++ ++ GD + + + V + Sbjct: 126 TEPYARAVIEATALTHAPS-----AVDEKVSVRVSRQQLLHGPGDPIQLVAVLDEAVLRR 180 >gi|257063582|ref|YP_003143254.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791235|gb|ACV21905.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 76 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S +K+ I ++ E ++ LA LD + N+ + P+ ++ +I Sbjct: 11 SKRKLGVRIAKLREEKGMSQRRLALVLELDRVTLNRIESGTAN-----PTISTLMRIADG 65 Query: 65 TNETICQLLDL 75 + +L Sbjct: 66 LDVAFEELFHY 76 >gi|254512558|ref|ZP_05124624.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221532557|gb|EEE35552.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 468 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 5/89 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S I + ++ T + +AR G+ P+ N + R S + + I Sbjct: 1 MSKTLIGPRLRQLRRDQKQTQAEMARNLGVSPSYINLLENNQ-----RSLSVQMLMSIAE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPL 92 A +L + + + P+ Sbjct: 56 AYAIDWRELTKDESTRRVADLRNVVQDPV 84 >gi|218135227|ref|ZP_03464031.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] gi|217990612|gb|EEC56623.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] Length = 167 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 46/162 (28%), Gaps = 15/162 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + ++T L++++G+ ++ K + R P + + KI A + Sbjct: 7 IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGE-----RNPKPDQLQKIAEALGIS 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + LD + ++ + D P+ I Sbjct: 62 VTVFLDYDINTISDVLSLVMKLNEQSPLKISADKDKDGNYIPS----------SIHMTFE 111 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + + + L Y D ++ + Sbjct: 112 DSQINEAICSYLNCKQQMDLIAYEDNDKAVIEQQKEFYDDKI 153 >gi|217965868|ref|YP_002351546.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|217335138|gb|ACK40932.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|307569590|emb|CAR82769.1| phage transcriptional regulator, Cro/CI family [Listeria monocytogenes L99] Length = 111 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 ++ I ++AE + S L RK G+ S K K P+ E + K+ + + Sbjct: 4 FDRIKKLAEEQKIPISELERKLGMGQNSLYKWKNQ-------KPTIEKLQKVADFFHVS 55 >gi|172041080|ref|YP_001800794.1| HTH family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852384|emb|CAQ05360.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium urealyticum DSM 7109] Length = 103 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R E T + LA+ G+ + +++ R P I I AT Sbjct: 15 EIKHRLQRAREIGGFTQTELAKIVGVSRATLANAEQGV-----RTPKRPLISAIAFATGV 69 Query: 68 TICQ 71 Sbjct: 70 DPRW 73 >gi|170758576|ref|YP_001785951.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405565|gb|ACA53976.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 130 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 5/90 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ L+ L K + + +K + P E + + ++ +L Sbjct: 7 LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFKISLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + T + S Sbjct: 62 VMDVKAKESTKTEPLVMNRFETIIDSIDRE 91 >gi|153939134|ref|YP_001389968.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152935030|gb|ABS40528.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318053|gb|ADF98430.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 130 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 8/90 (8%), Positives = 25/90 (27%), Gaps = 5/90 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ L+ L K + + +K + P E + + ++ +L Sbjct: 7 LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLTALGDFFEISLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + + S Sbjct: 62 VMDVKAKESIKTEPLVMNRFETIIDSIDRE 91 >gi|90420986|ref|ZP_01228890.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90334764|gb|EAS48540.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 132 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 6/82 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F K + + +T S +A G+ + + G GR W + I Sbjct: 1 MTPFGEK-----VRAFRKERGVTQSQMAAALGVSSAYLSALE-HGRRGRPTWDLLQRIIG 54 Query: 61 ILAATNETICQLLDLPFSDGRT 82 L + +L L Sbjct: 55 YLNVIWDDAEELERLAELSHPK 76 >gi|328955768|ref|YP_004373101.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456092|gb|AEB07286.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 72 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 1 MTSFSHKKIWEAIDRMAE-RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M K++ I + + R +T ARK +D T + ++ P+ + Sbjct: 1 MDKILQKQLGARIKSLRKTRIGMTQDAFARKCAIDETYYAAIEQG-----RHNPTFLMLK 55 Query: 60 KILAATNETICQ 71 KI + ++ + Sbjct: 56 KIASGLRVSLSE 67 >gi|327467300|gb|EGF12800.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 72 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIITNLKYIRESKGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|331267170|ref|YP_004326800.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] gi|326683842|emb|CBZ01460.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] Length = 165 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + + + LA + + S +K + + P E I ++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T LL S+ +TE +E Y+ S G + Sbjct: 57 TTDYLLLDENSEKTSTEVILEEDKDKYYKEVKSFGLWQVIYI 98 >gi|302539648|ref|ZP_07291990.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302457266|gb|EFL20359.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 189 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 42/164 (25%), Gaps = 6/164 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF-KILAATN 66 +I + ER T + LA +G+ N+ +R S ++ AT Sbjct: 4 RIAARVRTERERRKWTLAQLADASGVSRAMINRIERGESSPTAVVLGKLSAAFQLSVATL 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + G ++ S FP + Sbjct: 64 LALAEGSPDDTDGGADVRRQTDAAEWYDPATGYRRRQITSPRFPAEIAEIHLPPGARVPY 123 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI-LNSAIQVNCGD 169 +A Q + GD + L + + G+ Sbjct: 124 PAAAFAFIRQVVWVL----DGRLTFHDGDTVHELETGDTIELGE 163 >gi|300173268|ref|YP_003772434.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887647|emb|CBL91615.1| Transcriptional regulator, XRE family,putative [Leuconostoc gasicomitatum LMG 18811] Length = 71 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 5/74 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 ++++ + H ++ A+ G+ + + + PS KI +++ Sbjct: 2 LNNLEKLRKEHKVSQQDFAQYLGVTRQTISSLENGRYN-----PSILLAMKIARYFGKSV 56 Query: 70 CQLLDLPFSDGRTT 83 + Sbjct: 57 ENIFIYTEESDNHE 70 >gi|295132582|ref|YP_003583258.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294980597|gb|ADF51062.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 102 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 17/37 (45%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 I + E LT LA AG + + +K +R + R Sbjct: 43 IQQAREDKGLTQEQLAELAGTNKSYISKLERNLKDIR 79 >gi|284991527|ref|YP_003410081.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064772|gb|ADB75710.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 503 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I + LT LA + G ++ + ++ G + E + ++ A Sbjct: 2 QRIGMLVRDARRHRGLTQQQLAERLGTSQSAVARIEQGGQN-----LTLELLGRLSEALE 56 Query: 67 ET 68 Sbjct: 57 RE 58 >gi|261819794|ref|YP_003257900.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603807|gb|ACX86293.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 78 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I ++ ER L+ LA AGL T +R R S ++I +I +A + Sbjct: 16 HNIKKLRERQGLSQEALADLAGLHRTYIGSVERCE-----RNISIDNIDRIASALCVSP 69 >gi|229541109|ref|ZP_04430169.1| signal peptidase I [Bacillus coagulans 36D1] gi|229325529|gb|EEN91204.1| signal peptidase I [Bacillus coagulans 36D1] Length = 183 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 +SM+P + GD +I+N D ++ G K +I G I+ Sbjct: 36 IVVDGSSMMPTLKNGDRMIVNKIGSPKRFDIIVFHAPEGKDYIKRVIGLPGDRIE 90 >gi|184159752|ref|YP_001848091.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183211346|gb|ACC58744.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509665|gb|ADX05119.1| Putative HTH-type transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 183 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 17/144 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + H + I + + +L+ LA +AG+ + + + S + I Sbjct: 6 SVLQH--VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 58 Query: 62 LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 A ++ P EK+E + L PS S + G Sbjct: 59 AAVLGVDFRTIVSAPELKEHGLVNALAWQGEKEESKATFLASVPSRSQVELWTWSLAVG- 117 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137 + V + IY ++ + Sbjct: 118 -ESYVAEADAEGWQELIYVLEGEL 140 >gi|254852676|ref|ZP_05242024.1| signal peptidase I [Listeria monocytogenes FSL R2-503] gi|300765306|ref|ZP_07075290.1| signal peptidase I [Listeria monocytogenes FSL N1-017] gi|258605994|gb|EEW18602.1| signal peptidase I [Listeria monocytogenes FSL R2-503] gi|300513989|gb|EFK41052.1| signal peptidase I [Listeria monocytogenes FSL N1-017] Length = 189 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSI 193 K + TSM+P Y+ GD + + + + D ++ +G+ K LI G I Sbjct: 43 VKVEGTSMVPTYQDGDRIFIEKISKPDRFDIIVFDEPPMIGSGEHFIKRLIGLPGDKI 100 >gi|119509672|ref|ZP_01628818.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] gi|119465691|gb|EAW46582.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] Length = 379 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 19/189 (10%), Positives = 41/189 (21%), Gaps = 6/189 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + + R ++ LA A + + + + + K L Sbjct: 1 MVKQDELRNKLKQTRIRLGMSQQDLANLANVTRQTISGVESGQYA--PSTTIALRLAKAL 58 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 E + L T L + G + + N + T +P Sbjct: 59 GCQVEDLFWLEQDLPEIAATPAYNVPLGQRLRLILAQVGNQWIAHPLIGQNAFRTEMIPA 118 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD----ILILNSAIQVNCGDRLLIKPRTG 178 + G L +A + + R+ Sbjct: 119 DGEGDRLPGTKTMVVKLLDDPGNLHQTVILAGCAPALSLWARAAERWHPNLRVHWTLDNS 178 Query: 179 DIVAKVLIS 187 L Sbjct: 179 MTALHRLRR 187 >gi|41057218|ref|NP_958243.1| hypothetical protein VWBp01 [Streptomyces phage VWB] gi|39656041|gb|AAR29692.1| hypothetical protein [Streptomyces phage VWB] Length = 127 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 1/87 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + I + + ++ S +AR G+ P + N K G +R P+ E + + A Sbjct: 14 ENLAQLIKDIETTYKVSQSAIARAIGVAPATVNAWKLGKR-GSSRGPNPEKLRALHEAYP 72 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 + + + E L Sbjct: 73 KFTEERIFAAARRAAPGPLDEDAEERL 99 >gi|52787331|ref|YP_093160.1| YvaO [Bacillus licheniformis ATCC 14580] gi|163119661|ref|YP_080738.2| posible transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|319647810|ref|ZP_08002028.1| YvaO protein [Bacillus sp. BT1B_CT2] gi|52349833|gb|AAU42467.1| YvaO [Bacillus licheniformis ATCC 14580] gi|145903171|gb|AAU25100.2| posible transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|317390151|gb|EFV70960.1| YvaO protein [Bacillus sp. BT1B_CT2] Length = 133 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 9/112 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+F H + ++ ER LT + LA +G+ ++ + G+ P +I K Sbjct: 1 MTNFGHH-----LRQLRERKKLTVNQLAMYSGVSSAGISRIEN----GKRGVPKPATIRK 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + A +L+ +T ++ + + D +F + Sbjct: 52 LADALKVPYEELMASAGYISASTVQEARSSYDSIYDIVSQYDLEDLSLFDSE 103 >gi|81428204|ref|YP_395204.1| prophage lsa1 XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609846|emb|CAI54893.1| Putative prophage lsa1 DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 259 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 5/55 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I ++ N++ + LA + + + ++ R P E+ K+ Sbjct: 3 NNIRKLRLEQNVSQAELAEVLKISRQAISNYEKG-----LREPKLETWKKLADYF 52 >gi|332530500|ref|ZP_08406441.1| putative transcription regulator protein [Hylemonella gracilis ATCC 19624] gi|332040069|gb|EGI76454.1| putative transcription regulator protein [Hylemonella gracilis ATCC 19624] Length = 88 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/84 (10%), Positives = 24/84 (28%), Gaps = 1/84 (1%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFK 60 + ++ + ++ LT + A + G+ +++ +R G R +I Sbjct: 5 PVRTPDQLPTLLQAFRKQAGLTQNEAALRLGVTQQTYSALERNAETVGTGRLLKLLNILG 64 Query: 61 ILAATNETICQLLDLPFSDGRTTE 84 + Q Sbjct: 65 VELVLRPITPQPPAAGDDRRHPVW 88 >gi|319938336|ref|ZP_08012732.1| hypothetical protein HMPREF9488_03568 [Coprobacillus sp. 29_1] gi|319806519|gb|EFW03181.1| hypothetical protein HMPREF9488_03568 [Coprobacillus sp. 29_1] Length = 206 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 4/100 (4%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + ++HNL+ A++ G+ + + + PS I K+ ++ ++L Sbjct: 8 KNIRKQHNLSKREFAKQLGISAATIVRIENGITV----SPSKNLISKLAYYLQKSEVEIL 63 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 S + + S + P G Sbjct: 64 QDIQSQPFFENQTAFLYGNYLYIQGWFIQNLYSHINPNGE 103 >gi|317498279|ref|ZP_07956578.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894488|gb|EFV16671.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 159 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 5/77 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I ++ +LT + G+ + + + E P S+ I Sbjct: 3 KRIKKLRRELDLTQEKFGARIGVKGNTVAQWESGRNE-----PPDSSLAFICREFGVMDE 57 Query: 71 QLLDLPFSDGRTTEKKE 87 L E Sbjct: 58 WLRFGTGPMYAPEPTTE 74 >gi|307591326|ref|YP_003900125.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306986180|gb|ADN18059.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 86 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 AI + + NLT LA + GLD T + I R + E + K Sbjct: 16 GRAIQQRRKELNLTQENLAHRTGLDRTYIANIETGKINISLR--NIEKLAK 64 >gi|307127275|ref|YP_003879306.1| helix-turn-helix domain-containing protein [Streptococcus pneumoniae 670-6B] gi|295980949|emb|CBJ57197.1| putative transcriptional regulator [Streptococcus pneumoniae] gi|306484337|gb|ADM91206.1| helix-turn-helix domain protein [Streptococcus pneumoniae 670-6B] Length = 158 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSHGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 117 DLSDLIHTNIYLVETFDE 134 >gi|227872217|ref|ZP_03990579.1| XRE family transcriptional regulator [Oribacterium sinus F0268] gi|227841940|gb|EEJ52208.1| XRE family transcriptional regulator [Oribacterium sinus F0268] Length = 99 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 H I ID ++ +T LA G+ +K +R R + + K Sbjct: 29 HIVIQAMIDA-RKKSGMTQKELAEITGIAQGDISKLERGSANPSIRT--LQRLAK 80 >gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 269 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 10/67 (14%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + S + + + L+ LA K + + +K ++ P +E + I Sbjct: 100 SMLSQ-----NLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSV-----PDSEMLISI 149 Query: 62 LAATNET 68 Sbjct: 150 SEVLETP 156 >gi|239916764|ref|YP_002956322.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281414779|ref|ZP_06246521.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|239837971|gb|ACS29768.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] Length = 488 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ LT LA + G+ + + + R P + +I Sbjct: 18 LGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENA-----RREPRLSLVQRIAEVLGVP 72 Query: 69 ICQ 71 + Sbjct: 73 VED 75 >gi|172058590|ref|YP_001815050.1| helix-turn-helix domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991111|gb|ACB62033.1| helix-turn-helix domain protein [Exiguobacterium sibiricum 255-15] Length = 294 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 8/145 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIF 59 M F+ +I A+ R+ ++HNLT LA G+ +K + P+ + ++ Sbjct: 1 MDQFTSPQIGLALRRLRKKHNLTQKDLAN--GICSQAEISKIESGT-----HSPTVDLLY 53 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + I LD E + S + + + Sbjct: 54 ALSRRLQVPINTFLDHTNYRESLKILDENLLVRFRNSEFQSIYQETQKMINSSPLDRELN 113 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQD 144 + + Y ++ D R Sbjct: 114 LLVRYFYYLSSYRLKKIDYRTCIIG 138 >gi|120435188|ref|YP_860874.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577338|emb|CAL65807.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 64 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 17/38 (44%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + +N+T + LA + G+ + N ++ + Sbjct: 3 NRLKVLRAEYNMTQAQLADETGVSRQTINAIEKGKFDP 40 >gi|146298916|ref|YP_001193507.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146153334|gb|ABQ04188.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 129 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 7/104 (6%) Query: 1 MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M++ + I I R+ E ++ LA G+ S + + E + Sbjct: 1 MSTLTKPNHIGRKISRIRELRDMKQEALAYALGMSQQSISIIENSETVDE------EKLK 54 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 I + + + + + S F Sbjct: 55 AIAEVLGVSAEGIKNFSEEAVLNIIGNTYHDSNVVNGNAYSCNF 98 >gi|37526736|ref|NP_930080.1| hypothetical protein plu2846 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786168|emb|CAE15220.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 93 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 7 KKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + +D + ++ LT + +A + G T+ + + G + PS ++ K A Sbjct: 24 EQEFALLDELLAARKKAGLTQAQVAERMGTKATAITRLESRLASG-TQGPSYNTLKKYAA 82 Query: 64 ATN 66 A Sbjct: 83 AVG 85 >gi|18978223|ref|NP_579580.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] gi|18894036|gb|AAL81975.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] Length = 316 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 16/37 (43%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 E + + E++ + + LA G+ S + ++ Sbjct: 129 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEG 165 >gi|315640707|ref|ZP_07895809.1| signal peptidase IB [Enterococcus italicus DSM 15952] gi|315483462|gb|EFU73956.1| signal peptidase IB [Enterococcus italicus DSM 15952] Length = 182 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 1/85 (1%) Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCG 168 P I+ + + SM +K D +++ + ++ Sbjct: 4 PVKVDRFWFYFKFSLLALAIALVIRGFLLIPIQVEGKSMQLTLKKNDWVVVENVTTIHRF 63 Query: 169 DRLLIKPRTGDIVAKVLISRRGRSI 193 D ++ + GD K +I G SI Sbjct: 64 DIVVFRLADGDTYIKRVIGLPGESI 88 >gi|298492312|ref|YP_003722489.1| XRE family molybdate metabolism transcriptional regulator ['Nostoc azollae' 0708] gi|298234230|gb|ADI65366.1| transcriptional regulator of molybdate metabolism, XRE family ['Nostoc azollae' 0708] Length = 377 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/138 (9%), Positives = 34/138 (24%), Gaps = 2/138 (1%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + R ++ LA A + + + + + + K L Sbjct: 1 MKQENHLRNNLKSIRTRLGMSQQELANLAAVTRQTISGVESGLYA--PSVAISLRLAKAL 58 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 E + L K + L + GG + + + + +P Sbjct: 59 GCQVEELFWLEHDLPQIEAVLTKPVNNLQQLRVSLARVGGQWIAYPLVGKDAFRQDMIPA 118 Query: 123 IRSPHNGIYAIQTQDTRH 140 + + Sbjct: 119 DGEGERLTDSNKLNVRLL 136 >gi|294615154|ref|ZP_06695038.1| transcription regulator [Enterococcus faecium E1636] gi|312905108|ref|ZP_07764229.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|291591974|gb|EFF23599.1| transcription regulator [Enterococcus faecium E1636] gi|310631498|gb|EFQ14781.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579064|gb|EFU91255.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 71 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R + L+ + LA+K + + + + Sbjct: 5 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 44 >gi|258615577|ref|ZP_05713347.1| hypothetical protein EfaeD_07687 [Enterococcus faecium DO] gi|293560245|ref|ZP_06676744.1| transcription regulator [Enterococcus faecium E1162] gi|294620833|ref|ZP_06700037.1| transcription regulator [Enterococcus faecium U0317] gi|314947723|ref|ZP_07851130.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|291599618|gb|EFF30631.1| transcription regulator [Enterococcus faecium U0317] gi|291605789|gb|EFF35224.1| transcription regulator [Enterococcus faecium E1162] gi|295113443|emb|CBL32080.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|313645703|gb|EFS10283.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|315030236|gb|EFT42168.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315144773|gb|EFT88789.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315158696|gb|EFU02713.1| helix-turn-helix protein [Enterococcus faecalis TX0312] Length = 71 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R + L+ + LA+K + + + + Sbjct: 5 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 44 >gi|238757889|ref|ZP_04619071.1| Prophage repressor protein [Yersinia aldovae ATCC 35236] gi|238703874|gb|EEP96409.1| Prophage repressor protein [Yersinia aldovae ATCC 35236] Length = 72 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 2/55 (3%) Query: 155 DILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208 +++++ + G+ ++ + K LI G L LN Y + + Sbjct: 1 MMILVDQEKEPMPGNFVIAKLTDDNEATFKKLIVDAGIKY-LKPLNPAYRLIELN 54 >gi|225175587|ref|ZP_03729581.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168916|gb|EEG77716.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 121 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + E H T A+ G++ + ++ + R E + K + + T Sbjct: 6 GQRIKLLREEHGYTQRDFAKVIGINNSVLSRIEAGI-----RPVEDELLSKFASFFHCT 59 >gi|158320882|ref|YP_001513389.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141081|gb|ABW19393.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 125 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + +N+T LA K GL T+ + P E++ I + T Sbjct: 9 ERLKELRKENNMTQQELADKLGLVRTAIANYETGRTV-----PDAETLNLIANILSTTTD 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92 LL + K + Sbjct: 64 YLLGRANYIPKEKNKPSSTDII 85 >gi|149004216|ref|ZP_01829008.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|149012995|ref|ZP_01833884.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|149019646|ref|ZP_01834965.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225856698|ref|YP_002738209.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|303255604|ref|ZP_07341655.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|303260497|ref|ZP_07346465.1| hypothetical protein CGSSp9vBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|303262854|ref|ZP_07348791.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|303265324|ref|ZP_07351234.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] gi|303266531|ref|ZP_07352418.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|303268350|ref|ZP_07354146.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|147757811|gb|EDK64823.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147763148|gb|EDK70089.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|147931021|gb|EDK82001.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225726271|gb|ACO22123.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|301801880|emb|CBW34601.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302597460|gb|EFL64555.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|302636052|gb|EFL66550.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|302638409|gb|EFL68876.1| hypothetical protein CGSSpBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|302642071|gb|EFL72422.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|302643982|gb|EFL74242.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|302645189|gb|EFL75426.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] Length = 158 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 6/134 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHK 141 + IQT + Sbjct: 117 DLSDLIQTNIYLVE 130 >gi|110637230|ref|YP_677437.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279911|gb|ABG58097.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 79 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 16/43 (37%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 K+I + + E + S LAR D + K + + Sbjct: 15 QKRIGLRVIELREHKGWSQSDLARACNKDRQAIEKIESGKVNP 57 >gi|15596556|ref|NP_250050.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9947301|gb|AAG04748.1|AE004565_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 218 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 16/180 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + L+ LAR A + + + S ++ +I AA Sbjct: 43 EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 97 Query: 67 ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L+ P +D E LL P+ + G V Sbjct: 98 VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 155 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRT 177 P+ + I+ + + VN GD ++ R Sbjct: 156 EPDAAGWREIVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDGDEVVRFTRN 215 >gi|313621813|gb|EFR92516.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria innocua FSL J1-023] Length = 111 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 ++ I ++AE + S L RK G+ S K K P+ E + K+ + + Sbjct: 4 FDRIKKLAEEQKIPISELERKLGMGQNSLYKWKNQ-------KPTIEKLQKVADFFHVS 55 >gi|295107201|emb|CBL04744.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 148 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/105 (8%), Positives = 28/105 (26%), Gaps = 4/105 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + LT LA++ + + ++ + T+ I + L Sbjct: 3 LKDILPELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDM--TKLIARELDVPITE 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + ++ D + + + G Sbjct: 61 LLEMPDHYCQSCGMMFTGSGQHGHE--ADGTETEDYCRWCYEDGA 103 >gi|289705735|ref|ZP_06502119.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] gi|289557575|gb|EFD50882.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] Length = 476 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ LT LA + G+ + + + R P + +I Sbjct: 6 LGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENA-----RREPRLSLVQRIAEVLGVP 60 Query: 69 ICQ 71 + Sbjct: 61 VED 63 >gi|218133297|ref|ZP_03462101.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC 43243] gi|217992170|gb|EEC58174.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC 43243] Length = 154 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 11/131 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ M + T LA K G++ S ++ + R P+ +I I Sbjct: 34 ETFISRLEEMRKEKGFTQRELASKVGVNEVSMSRYIKGE-----RVPTVTTIVSIAQVLG 88 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ L+ R W P Sbjct: 89 ASVDYLVGTSNVKKRQNNADRIRNMSDEELAQFLCKVKSDYQ------WMEHEFPSEEEH 142 Query: 127 HNGIYAIQTQD 137 +Q++ Sbjct: 143 SEWEEWLQSEA 153 >gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916] gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916] Length = 170 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 5/96 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + + NL+ LA K G+ ++ +K + R T+ + KI A + Sbjct: 2 EISEKLKDLRTFKNLSTYDLAEKTGIPQSTISKLENGN-----RKIDTDILQKIADAMDV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 I +K E + + Sbjct: 57 PIDIFFQKQSPSEILGKKVTYEKLKEWDDKYTNVVE 92 >gi|188579608|ref|YP_001923053.1| peptidase S24 and S26 domain protein [Methylobacterium populi BJ001] gi|179343106|gb|ACB78518.1| peptidase S24 and S26 domain protein [Methylobacterium populi BJ001] Length = 154 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 10/107 (9%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172 + + +P P+ + SM GD+ ++ +++ G ++ Sbjct: 41 VEDALELPRWLVPN------PPATFLWRIAGDSMRDAGIFDGDLACVDRSLKPGHGSVVV 94 Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218 G++ K ++ G L N PV + E+++++ + Sbjct: 95 AAVD-GEMSIKRMV-VEGNRARLAFDNADLPVYALEELAEVDVWGVV 139 >gi|157150768|ref|YP_001451299.1| Cro/CI family transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075562|gb|ABV10245.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii str. Challis substr. CH1] Length = 167 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + + + + L+ + + S +K + P E I ++ Sbjct: 2 KLADKLFELRKEKGWSQEKLSEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 T LL ++ Y+ S GF+ Sbjct: 57 TTDYLLLEDSDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSA 102 >gi|120400369|gb|ABM21424.1| transcriptional regulator [Lactobacillus johnsonii] gi|120400393|gb|ABM21447.1| transcriptional regulator [Lactobacillus johnsonii] Length = 374 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 12/168 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + +T + LA K G+ ++ +R E PS E+ KI++A + Sbjct: 5 GTRLKEARYFRKMTITDLAEKIGVTKQMISRYERETGE-----PSLETFQKIVSALKFPV 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSPHN 128 + ++ + + F+ + + T + PE+ Sbjct: 60 NFFTESDSNNFCSQGTFYRSRLTATQTEKRPSEFYQKAACYIRDYFETMIEFPELPKFDR 119 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + + L+ G + I Sbjct: 120 SFDSPEEAANYIRKIWRLGATPIPNMIRLL------EEHGMIIYIAEN 161 >gi|88802521|ref|ZP_01118048.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] gi|88781379|gb|EAR12557.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] Length = 245 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/173 (8%), Positives = 44/173 (25%), Gaps = 12/173 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I ++ L+ A L + + E P +++ K+ + +I Sbjct: 5 GKNIKKIRVIKGLSQQVFAELFSLKRATLGAYEEGRSE-----PKIDTLIKVANYFSISI 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L + + E + S + Sbjct: 60 DDFLTKEITVNQLLRFNEGITTDINQIVKASFKEIPFVNSLNSA-----FFVDNFKRSQS 114 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ R + + D+ ++ + D ++ + + D + Sbjct: 115 YNSLP--TIRVPVEGDLDFLAFMVKDLFRVSDEEGLFPNDVVIGESKNIDALF 165 >gi|332798117|ref|YP_004459616.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695852|gb|AEE90309.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 253 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ +T + LA KAG+ + + +E PS +++ KI AA + + C Sbjct: 141 IKKIRCERKITQAELAEKAGVSTGLIGQIESGKVE-----PSIKTLEKIAAALSLSPCFF 195 Query: 73 LDLPF 77 + Sbjct: 196 VSEDE 200 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I I + + NL+ S LA K G+ P+ + + +SI K L Sbjct: 72 IGAKIALIRQEKNLSLSELAEKVGISPSYLCQIESGRAMPALST--LKSIAKALD 124 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + ++ N+T LA++AGL + ++ + + PS E+I K+ A N + Sbjct: 7 IRSLRQKRNMTLQDLAQQAGLSVSYLSEIELG-----KKQPSLETIDKLAQALNISR 58 >gi|332157993|ref|YP_004423272.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2] gi|331033456|gb|AEC51268.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2] Length = 192 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 43/156 (27%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + +T LARKAG+ K + ++ R + + + Sbjct: 13 IKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRALLECQKTRVTAKN 72 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + K +++ L + S G+ + V + + Sbjct: 73 IMSSPIISVGPDDKIEKVVRLMERYNISQVPVMDKDKVIGSITERLLVRKSLEEEDIYSK 132 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + S L+ + + G Sbjct: 133 KAKEIMEEPFPSVSEDEDLEVIKYLLEDHQAVIVLG 168 >gi|330822028|ref|YP_004350890.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] gi|327374023|gb|AEA65378.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] Length = 191 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + +R LT +A AG+ ++ +R PS +S+ I A + Sbjct: 15 IGGRIRALRQRLKLTLDEVAVMAGISKPFLSQVERGRAT-----PSLQSLVGIARALGVS 69 Query: 69 ICQL 72 + Sbjct: 70 MQYF 73 >gi|311900507|dbj|BAJ32915.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 192 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 41/132 (31%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + LA +A L +S ++ + R + + + + A + T Sbjct: 12 VRKRIRALRVAQGWSLEELAARANLSQSSLSRIENGQ-----RRLALDQLVTLANALDTT 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + QL++ D + + ++ +P G G T + Sbjct: 67 LDQLVETAAEDVVISPTVDGPHGIMRWPVKGDPGISVVRQRMTEPPPDNPARMRAHPGRE 126 Query: 129 GIYAIQTQDTRH 140 + + Sbjct: 127 WLVVLSGTAILM 138 >gi|312126655|ref|YP_003991529.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776674|gb|ADQ06160.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 77 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + L+ LA+ AG+ ++ + R P+ +++ ++ A + Sbjct: 2 VGKKLRELRIQKRLSQQQLAKIAGVPQSTIWYIESEN-----RNPTIKTMKRLATALGVS 56 Query: 69 ICQL 72 I + Sbjct: 57 IEEF 60 >gi|302337605|ref|YP_003802811.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM 11293] gi|301634790|gb|ADK80217.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM 11293] Length = 376 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/112 (9%), Positives = 31/112 (27%), Gaps = 5/112 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I R+ + + + L+ + G+ + + E P + ++ K A Sbjct: 4 EDIGANIRRIMKIKGYSIAKLSARMGVGTATISNILNGRSE-----PKSSTLLKFCNALE 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +L + + + + N + Sbjct: 59 VGLPDILADAPKLQSLRFRTNSNLSAREKAERDQMLYETAQWLKNYNTLEDL 110 >gi|295135771|ref|YP_003586447.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294983786|gb|ADF54251.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 152 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 8/91 (8%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T SH I I R+ E + LA + G+ S + ++ E + K+ Sbjct: 17 TKTSH--IGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSE------HIEDEKLEKV 68 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + + + E Sbjct: 69 AKVLGVSKEAIKNFSEEKAINFFNSIYENNF 99 >gi|238916357|ref|YP_002929874.1| hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] gi|238871717|gb|ACR71427.1| Hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] Length = 217 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I LT +A G+ + + + +P S+ K+ + Sbjct: 4 DIGCKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 58 Query: 68 T 68 + Sbjct: 59 S 59 >gi|237741715|ref|ZP_04572196.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256845043|ref|ZP_05550501.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294785671|ref|ZP_06750959.1| DNA-binding protein [Fusobacterium sp. 3_1_27] gi|229429363|gb|EEO39575.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256718602|gb|EEU32157.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294487385|gb|EFG34747.1| DNA-binding protein [Fusobacterium sp. 3_1_27] Length = 182 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 7/136 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R+ + NL+ LA+ + + + + +R P+ +++KI + Sbjct: 8 VSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGN-----PTLSTLWKIANGMQVS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L+ P + T+ E E L + F + V + S + Sbjct: 63 FNTLIAQPKLPYKVTKLAEIEPILDMNGELKNYSLFSD--IENNFSVYQIEVGKEISWIS 120 Query: 129 GIYAIQTQDTRHKTQD 144 + T + Q Sbjct: 121 EAHLHGTAEFVIVIQG 136 >gi|228991352|ref|ZP_04151308.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] gi|228997428|ref|ZP_04157047.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|229005073|ref|ZP_04162797.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228756175|gb|EEM05496.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228762304|gb|EEM11231.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|228768370|gb|EEM16977.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] Length = 181 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + E L+ LA+ A + P+ ++ +R + + K L Sbjct: 5 NIGKKVKELREYKELSMRELAKMAEITPSMLSQIERGLANPSIQTLKL--LAKALEVPTF 62 Query: 68 TI 69 + Sbjct: 63 SF 64 >gi|107022224|ref|YP_620551.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689169|ref|YP_834792.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105892413|gb|ABF75578.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116647258|gb|ABK07899.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 206 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 7/120 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA ++G+ + + +R P+ + K+ A Sbjct: 15 NERIARRVRELRTVRGYTLDALAARSGVSRSMISLIERASA-----SPTAVVLDKLAAGL 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEI 123 ++ L D + + P+ + +P+ + V P Sbjct: 70 GVSLAGLFGGDRDDAPAQPLARRAQQAEWRDPASGYVRRNLSPAGWPSPIQLVEVDFPPG 129 >gi|90962310|ref|YP_536226.1| DNA-binding protein [Lactobacillus salivarius UCC118] gi|90821504|gb|ABE00143.1| DNA-binding protein [Lactobacillus salivarius UCC118] Length = 203 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 KKI + I + + + T + LA+K G+ + +K + Sbjct: 3 QKKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIP 45 >gi|15600180|ref|NP_253674.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107104087|ref|ZP_01368005.1| hypothetical protein PaerPA_01005160 [Pseudomonas aeruginosa PACS2] gi|116053135|ref|YP_793456.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894084|ref|YP_002442953.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238300|ref|ZP_04931623.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|254244126|ref|ZP_04937448.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|296391830|ref|ZP_06881305.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110019|ref|ZP_07795924.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951271|gb|AAG08372.1|AE004911_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588356|gb|ABJ14371.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170231|gb|EAZ55742.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|126197504|gb|EAZ61567.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|218774312|emb|CAW30129.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310882426|gb|EFQ41020.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 199 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 18/164 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + +R LT + LA ++ L ++ +R +PS ++F I + T Sbjct: 20 LGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLA-----YPSIPALFNIARSLGVT 74 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125 Q + + G D + P ++ + P Sbjct: 75 -IQWFFASEAAVDPADAGYVVRRNTRMSVHYEDGIIDELLTPQPSRQLEILHSRFPPGTY 133 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 Y+ + ++ + ++ + + Q+ GD Sbjct: 134 -SQQSYSHEGEEAGYILSG--------IFELWVGDRHFQLREGD 168 >gi|330863911|emb|CBX74000.1| uncharacterized HTH-type transcriptional regulator ydcN [Yersinia enterocolitica W22703] Length = 206 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/145 (8%), Positives = 36/145 (24%), Gaps = 6/145 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I + + + + A + G+ + +R P+ +++K Sbjct: 19 MKELTR-HIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGES-----SPTVATLWK 72 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + N + Q L+ P + + + + Sbjct: 73 IASGLNVSFSQFLETPPAQSAALHRHGLLTTFNSETSGMRVVPLFPYDATLRMDMFVIDL 132 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145 + + + + Sbjct: 133 DPGGCSESTPHEAGVIEHVIVIEGE 157 >gi|332161859|ref|YP_004298436.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666089|gb|ADZ42733.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 188 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/145 (8%), Positives = 36/145 (24%), Gaps = 6/145 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + I + + + + A + G+ + +R P+ +++K Sbjct: 1 MKELTR-HIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGES-----SPTVATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + N + Q L+ P + + + + Sbjct: 55 IASGLNVSFSQFLETPPAQSAALHRHGLLTTFNSETSGMRVVPLFPYDATLRMDMFVIDL 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145 + + + + Sbjct: 115 DPGGCSESTPHEAGVIEHVIVIEGE 139 >gi|306835386|ref|ZP_07468407.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|304568752|gb|EFM44296.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 437 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 16/38 (42%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I + ++ LT +A+K GL + N+ + Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRP 44 >gi|303242146|ref|ZP_07328636.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590333|gb|EFL60091.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 121 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43 M + S KK+ E + ++ E LT L G++ + +R Sbjct: 1 MKTLSAKKLAETVTKLREEKGLTKEELGTLTGINRIMIGRIER 43 >gi|257415438|ref|ZP_05592432.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257157266|gb|EEU87226.1| predicted protein [Enterococcus faecalis ARO1/DG] Length = 250 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 3/67 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKI 61 + K++ + ++ T LA K GL ++ + + R+ + I K Sbjct: 20 KITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRY--LKKIAKA 77 Query: 62 LAATNET 68 T + Sbjct: 78 CDTTGDW 84 >gi|229160813|ref|ZP_04288804.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] gi|228622661|gb|EEK79496.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] Length = 145 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 5/79 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R+ E + +A+K G+ + K + P E++ + N T Sbjct: 3 LGQQLKRLRESQGFSQEDVAKKVGITRQAVYKWENDKS-----CPDIENLILLSEMYNVT 57 Query: 69 ICQLLDLPFSDGRTTEKKE 87 + +L+ + E Sbjct: 58 LDELIKGNQNLKEKIHIDE 76 >gi|227502798|ref|ZP_03932847.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] gi|227076528|gb|EEI14491.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] Length = 437 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 16/38 (42%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I + ++ LT +A+K GL + N+ + Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRP 44 >gi|261366423|ref|ZP_05979306.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571685|gb|EFB77220.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 200 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 18/44 (40%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 ++++I + I + N+T + LA+ G + + Sbjct: 3 LTNEQIGQRIKEVRTEKNITQTQLAKFLGKSLRTVQSYESGESR 46 >gi|259908724|ref|YP_002649080.1| Repressor protein CI [Erwinia pyrifoliae Ep1/96] gi|224964346|emb|CAX55855.1| Repressor protein CI [Erwinia pyrifoliae Ep1/96] Length = 196 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 33/218 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M S E + ++ L+ S LA+ AG++ + +K E Sbjct: 1 MKKLS-----ERLHDAMQKTGLSSQSELAKLAGVNQSIISKILSGKNETSKYSG------ 49 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 ++ AA + L++ + ++ TG + V Sbjct: 50 RLAAALGISADWLINGAGAMEGGEGPLQRIDTSRLVS----------VWDETGKTADVVS 99 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 + + +Y ++ + +G +++++ I ++ G Sbjct: 100 WHDSVPDYFRVYLMKKNT---------GIDKAPEGALILVDPKISAGNNQLVVT-NLRGI 149 Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIA 216 I A + + L + P + + S IE +A Sbjct: 150 IAAYRFLEGGAKYGFLDVDDPRIPPFEITDPSCIEGVA 187 >gi|222084212|ref|YP_002542738.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721660|gb|ACM24816.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 121 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F EA+ ++ R ++ +A + P + + G+ P+ + + + Sbjct: 1 MTPF-----GEAVRKLRARKGVSQKEMAAALNVTPAYLSALE----HGKRGTPTFDLLQR 51 Query: 61 ILAATNETICQ 71 I N + Sbjct: 52 IAGYFNIIWDE 62 >gi|297196426|ref|ZP_06913824.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197722252|gb|EDY66160.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 529 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 29/127 (22%), Gaps = 4/127 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ER T LAR+ G+ ++ ++ P E + +I +L Sbjct: 19 LSELRERSGRTYGSLARRVGVGASTLHRYCSGRTVPMEFAP-VERLARIC---GCRGDEL 74 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + L + P + P+ Sbjct: 75 VALHRLWVLADAARGTRQERAARTGVPDKEGDAEAAGPEDDHDGEAPGPDDDGDAEAPGP 134 Query: 133 IQTQDTR 139 Sbjct: 135 DDGDAEA 141 >gi|169829608|ref|YP_001699766.1| SinR protein [Lysinibacillus sphaericus C3-41] gi|168994096|gb|ACA41636.1| SinR protein [Lysinibacillus sphaericus C3-41] Length = 300 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 17/148 (11%), Positives = 38/148 (25%), Gaps = 10/148 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I + LT A++ G+ ++ ++ +N+ PS E ++KI + Sbjct: 34 ETFGEVISNARKEKKLTLREAAKRIGISHPYLSQLEKN----KNKNPSFEILYKIAYELD 89 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L L D T L + + + Sbjct: 90 VSFGYLNLLADIDTGFTVDSFNASQLQLIKDLKNESLKCKNYN------ELLEMYSSYFE 143 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKG 154 + + + Sbjct: 144 TEDSKSGGEYLFNFFVTTEEIKNNIKNQ 171 >gi|157961683|ref|YP_001501717.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846683|gb|ABV87182.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 209 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 18/197 (9%), Positives = 52/197 (26%), Gaps = 27/197 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + K + D + + A+ G++ ++ ++ R I + K+ + Sbjct: 11 TQKAVRRVWDEFKSETGTSQAKAAKALGINQSALSQYLRGEIPLNTDF--LAKFAKLTKS 68 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 +++ + L G F ++ +P Sbjct: 69 DLDSLGITPATVGAMPLELRYTLSGRRLRDTSALVPSPTSFEGCFGIVVDYDDFALPRDS 128 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI-LNSAIQVNCGDRLLIKPRTGDIV-- 181 ++ D +I ++ ++ G P +++ Sbjct: 129 IMIVD-----------------ETTTIKEYDSVILVSRDDRMINGTIRYT-PDGWEVLEP 170 Query: 182 ----AKVLISRRGRSID 194 A+ + R +I Sbjct: 171 HARGARRFVVRGDDTIY 187 >gi|86739175|ref|YP_479575.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566037|gb|ABD09846.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 325 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I ++ LA++AG+ ++ +R R PS E + +I A Sbjct: 71 DLGDFIRDQRHSAQISLRQLAKQAGVSNPYLSQIERG-----LRRPSAEILQQIAKALRI 125 Query: 68 T 68 + Sbjct: 126 S 126 >gi|66391410|ref|YP_238713.1| ORF184 [Staphylococcus phage Twort] gi|62637340|gb|AAX92451.1| ORF184 [Staphylococcus phage Twort] Length = 70 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ T LA++ G++ ++ + ++ R + ++ KIL + + + Sbjct: 9 LQRIRIEKGYTLRSLAKELGVNYSTISYWEQGLKT--PRSGNKINLEKILETPSHILFE 65 >gi|83720726|ref|YP_443769.1| hypothetical protein BTH_I3276 [Burkholderia thailandensis E264] gi|83654551|gb|ABC38614.1| gp48 [Burkholderia thailandensis E264] Length = 105 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI LT + +A + G ++ ++ + + PS ++ K AA Sbjct: 42 LRAILSARRDAGLTQAQIAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97 >gi|30263168|ref|NP_845545.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528533|ref|YP_019882.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186017|ref|YP_029269.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|52142313|ref|YP_084521.1| helix-turn-helix family DNA-binding protein [Bacillus cereus E33L] gi|65320496|ref|ZP_00393455.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|229012438|ref|ZP_04169613.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] gi|30257802|gb|AAP27031.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503681|gb|AAT32357.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179944|gb|AAT55320.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|51975782|gb|AAU17332.1| DNA-binding protein, helix-turn-helix family [Bacillus cereus E33L] gi|228748797|gb|EEL98647.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] Length = 69 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 9/77 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H KI T LA + G+ + ++ PS FK Sbjct: 1 MLLLLHNKIV----VCRAEKGWTQEELATRVGVSRQTIATLEKNKYN-----PSLILAFK 51 Query: 61 ILAATNETICQLLDLPF 77 I A + + + D Sbjct: 52 IANAFEKPLTDVFDYLE 68 >gi|330967852|gb|EGH68112.1| transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 125 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + R+ + L+ LAR G++ + + PS + + KI Sbjct: 26 DLIGPRVAHNLQRLRSKRYLSMDALARLTGVNRAMLAQIESGRSV-----PSIKVLCKIA 80 Query: 63 AATNET 68 + Sbjct: 81 KGLKVS 86 >gi|298674998|ref|YP_003726748.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] gi|298287986|gb|ADI73952.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] Length = 185 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 20/143 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + R T + LA+ G+ + + + P ++ KI A + Sbjct: 7 ENLKRKRNELGFTQNELAKMTGVSQPLIARIE-----ANDVDPRLSTVKKIYDAFQKAEN 61 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 + L S D+ + ++ V V E S + Sbjct: 62 KDLLAKNIMHTDV-----------VYISPDKTINDAVNIMEKHGYSQVPVLEDWSCVGSV 110 Query: 131 YAIQTQDTRHKTQDTSMLPLYRK 153 ++D K + + Sbjct: 111 ----SEDMILKVMTDNKINAVPD 129 >gi|294783001|ref|ZP_06748325.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] gi|294479879|gb|EFG27656.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] Length = 184 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I E + + ++ LA K L + ++ ++ PS E++ KI Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKA-----SPSIENLKKIAHTL 54 >gi|323527291|ref|YP_004229444.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323384293|gb|ADX56384.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 228 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 6/150 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 31 VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 85 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L ++G E+ ++ S PT Sbjct: 86 VAAFLRRHATNGFEHLPAERSSRIVSSNGRYSARPLYPENEPT-AAEFHELRIAPLHTEA 144 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 G+ + ++ L+ Sbjct: 145 GVRRAPGTTVNLVVSEGTLEVSVHDQRQLL 174 >gi|251779099|ref|ZP_04822019.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083414|gb|EES49304.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 386 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S+K I I L+ S L+ K G+ + ++ + PS + K++ Sbjct: 11 SNKIIPAKIREARISRGLSLSELSTKIGVSSQAISQYELGIST-----PSALTFIKLVEE 65 Query: 65 TNETICQLLDL 75 + Sbjct: 66 LDFPSTFFYQQ 76 >gi|238761245|ref|ZP_04622222.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] gi|238761498|ref|ZP_04622474.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700472|gb|EEP93213.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700725|gb|EEP93465.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] Length = 193 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I R E+ LT + LA++AG+ ++ ++ + PS E+++ + Sbjct: 21 ASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGN-----PSLETLWSLA 67 >gi|229826250|ref|ZP_04452319.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] gi|229789120|gb|EEP25234.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] Length = 220 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 17/40 (42%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 +KI + I + LT LA K G+ + +K + Sbjct: 4 EKISKFIATTRTKIGLTQKELADKIGVSDKTISKWETGKS 43 >gi|257065273|ref|YP_003144945.1| looped-hinge helix DNA binding domain, AbrB family [Slackia heliotrinireducens DSM 20476] gi|256792926|gb|ACV23596.1| looped-hinge helix DNA binding domain, AbrB family [Slackia heliotrinireducens DSM 20476] Length = 144 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 14/40 (35%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + I +R LT LA G+ + K + Sbjct: 3 IAQNILAARQRSGLTQEQLAASVGVSRQTVAKWESGETSP 42 >gi|210630941|ref|ZP_03296686.1| hypothetical protein COLSTE_00571 [Collinsella stercoris DSM 13279] gi|210160256|gb|EEA91227.1| hypothetical protein COLSTE_00571 [Collinsella stercoris DSM 13279] Length = 90 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ +I L+ LA + G+ ++ + + PS ++ K+ Sbjct: 27 EREVMRSIVEARLAAGLSQKELAERCGMRASNLCRLENGNGN-----PSVATLAKVAHGL 81 Query: 66 NET 68 + Sbjct: 82 GKN 84 >gi|257061988|ref|YP_003139876.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|256592154|gb|ACV03041.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 333 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + ++ R L+ LA A LD T + +R R PS I I A + Sbjct: 8 ELGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERG-----KRNPSLTCINSIFQALDI 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 I ++ L + + + + D V P Sbjct: 63 DIIEIFQLFDYTNKINQLSQFCQSYDLEFEYLAEVLNDPKVIPMIRG 109 >gi|218248928|ref|YP_002374299.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|218169406|gb|ACK68143.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] Length = 333 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + ++ R L+ LA A LD T + +R R PS I I A + Sbjct: 8 ELGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERG-----KRNPSLTCINSIFQALDI 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 I ++ L + + + + D V P Sbjct: 63 DIIEIFQLFDYTNKINQLSQFCQSYDLEFEYLAEVLNDPKVIPMIRG 109 >gi|148378605|ref|YP_001253146.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153931517|ref|YP_001382992.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937449|ref|YP_001386538.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288089|emb|CAL82157.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152927561|gb|ABS33061.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933363|gb|ABS38862.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 130 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 5/90 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ L+ L K + + +K + P E + + ++ +L Sbjct: 7 LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + T + S Sbjct: 62 VMDVKAKESTKTEPLVMNRFETIIDSIDRE 91 >gi|49478178|ref|YP_037436.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329734|gb|AAT60380.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 374 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 17/193 (8%), Positives = 52/193 (26%), Gaps = 12/193 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 N +I +L+ + K F ++ + Sbjct: 56 YFNISIDELISYKPQMEQEDIKDLYHRLAEAFSEKPFDEVMMECREIVKKYYSCFPL--- 112 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183 I + + + + + + + + L+ + + Sbjct: 113 ---LIQIGILFINHHMLTEDTDRRI-EILEEAMNLFSRVQEESDDVSLVKEAVSFQATCY 168 Query: 184 VLISRRGRSIDLM 196 +++++ + L+ Sbjct: 169 LILNKPNGVLQLL 181 >gi|3915849|sp|P16117|RPC1_BP434 RecName: Full=Repressor protein CI gi|14987|emb|CAA68301.1| unnamed protein product [Phage 434] Length = 95 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 6/99 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + L + LA+K G S + + + R R+ + ++ +A + Sbjct: 3 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRF-----LPELASALGVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + LL+ + G + Sbjct: 57 VDWLLNGTSDSNVRFVGHVEPKGKYPLISMVRAGSWCEA 95 >gi|328910532|gb|AEB62128.1| yqaE hypothetical protein [Bacillus amyloliquefaciens LL3] Length = 126 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + ++ ++ L+ L +K GL ++ + +R R P ++ K + Sbjct: 2 RFGDQLRQLRKQRKLSQKSLGQKFGLAESTISMYERNE-----REPDYATLVKFADFFDV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + LL + K+ + + Sbjct: 57 STDFLLRGEDYYRDKARELRKQNDVRFAA 85 >gi|323464795|gb|ADX76948.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius ED99] Length = 179 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 45/169 (26%), Gaps = 21/169 (12%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ + P+ E+ IL Sbjct: 2 EIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKT-----SPNMETFLNILEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIR 124 + D K E+ G++ N+++ + E Sbjct: 57 SPRDFFDDKQVAKVHYPKSEQLSYCE-----DEKGYYLQWPVKHSNEFDMEPLLLTLEPH 111 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 + + + + + + L + GD L Sbjct: 112 ASYKDFQPSTSDTFVYCLEGSVTL--------TLGEQQYTAEKGDALYF 152 >gi|291571772|dbj|BAI94044.1| putative XRE family transcriptional regulator [Arthrospira platensis NIES-39] Length = 115 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 29/104 (27%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + + LA G+D T +K + + + + + L E + L Sbjct: 11 IRQARKDRGYSQRELAGLLGVDFTYLSKLENDRADYAPKEEVIRGLARNLGIDEEELIFL 70 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K+ F F VF + + Sbjct: 71 AGRIPHHYENFLKENNREITALFRRLQENPNFAKQVFDAASGKD 114 >gi|268611718|ref|ZP_06145445.1| hypothetical protein RflaF_19698 [Ruminococcus flavefaciens FD-1] Length = 123 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 6/113 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + K + + + LT LA+K + + +K + ++ +P E + I Sbjct: 1 MTTKKSFHSNLAKRRKELGLTQEMLAQKINVSSQAVSKWE------KSSYPDPELLPDIA 54 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 A N +I L D + + P F + + Sbjct: 55 KALNTSIDSLFGNRSGDAEIDIFQLVHDRIQSLSPDKRSKFMIQLFYSAIYAY 107 >gi|251778290|ref|ZP_04821210.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082605|gb|EES48495.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 183 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 1/67 (1%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + +I I + LT + G+ ++ + ++ + + P ESI K Sbjct: 8 SDLTLLEIGNRIQERRKELKLTLQEVGDIVGVASSTIQRYEKGL-IAKMKLPVIESIAKA 66 Query: 62 LAATNET 68 + Sbjct: 67 INVNPVW 73 >gi|212638621|ref|YP_002315141.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560101|gb|ACJ33156.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 115 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + L +A+K G+ T++ ++ R P E++ KI + Sbjct: 12 GDRLQELRNKMKLRQEDVAKKIGVGRTTYAMYEQG-----KREPDYETLLKIANFFGVS 65 >gi|168178240|ref|ZP_02612904.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182670949|gb|EDT82923.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 381 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 19/215 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I + I + +T LA G+ S +K + +P + + Sbjct: 1 MREL---NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSS-----YPDIVLLPE 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + N ++ +LL + K F + ++ Sbjct: 53 LATYFNISVDELLGYSPQLTKEDIGKIYSKLSHEFAVKPFDEVMEQCNKLIKKYYSCFPF 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Y+ ++ ++ + IL+ + + + T + Sbjct: 113 LLSIIQLLLNYSS-------LIKNDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 165 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 ++++ + I L+ N P D+ I Sbjct: 166 LSEMTLGNSEEVIRLL-DNKLDP---YRGDDVILI 196 >gi|206968685|ref|ZP_03229640.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] gi|206735726|gb|EDZ52884.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] Length = 262 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + R+ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57 >gi|167747135|ref|ZP_02419262.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] gi|167654095|gb|EDR98224.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] Length = 239 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 4/54 (7%), Positives = 17/54 (31%), Gaps = 2/54 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ ++R + + L + + + +K + + +I Sbjct: 4 YKNLNRFRKEKGWSQEELGNRLNVSRQTVSKWELGTTT--PEMNKLMELSRIFQ 55 >gi|152984440|ref|YP_001347383.1| DNA-binding protein [Pseudomonas aeruginosa PA7] gi|150959598|gb|ABR81623.1| DNA-binding protein [Pseudomonas aeruginosa PA7] Length = 205 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 14/169 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K+I + + +RH LT L+ ++G+ ++ +K + + S E + Sbjct: 16 LQRKEIGARLRAIRKRHELTLKQLSERSGVALSTLSKMELAQV-----SVSYEKLAAAAR 70 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-- 121 A I Q+ + + + G ++ G+ P Sbjct: 71 ALEVDIAQIFRAAPPPADAPGQVTVVHGGVDDATGYNTGSYEYHPL-AGDFPRRSMTPLY 129 Query: 122 -----EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 R + Q+ + + G+ + + Sbjct: 130 ARIIARERREFDDYIRHPGQEFALVLSGRVRIQ-FENGESVSVGPRETA 177 >gi|289651209|ref|ZP_06482552.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 117 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I + + ++ + LA K G D +R P E + KI Sbjct: 8 VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGI-----HLPGVEQLIKI 55 >gi|269216324|ref|ZP_06160178.1| DNA-binding protein [Slackia exigua ATCC 700122] gi|269130583|gb|EEZ61661.1| DNA-binding protein [Slackia exigua ATCC 700122] Length = 198 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 15/163 (9%), Positives = 43/163 (26%), Gaps = 17/163 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R+ ++L+ LA + + + + + S + + +++ + Sbjct: 7 IKRLRSENDLSQDDLASRIYVSRQTISNWENDKT--YPDVQSLLLLSATFDVSVDSLIKG 64 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + K++ +L + + + W +P Sbjct: 65 DVTAMEEIIGNKDLAKKLTILSWTGAVFLIASVVLLAGGTMFWEWGMIPSTIIWLLSFGI 124 Query: 133 IQTQDTRHKTQDTSMLPLY----RKGDILILNSAIQVNCGDRL 171 S R D++ + GD + Sbjct: 125 -----------GCSFFWRIDRIKRDQDLVTYREIVSFIKGDPV 156 >gi|256397327|ref|YP_003118891.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363553|gb|ACU77050.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 165 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + LA+ AG+ ++ +R R PS E + ++ A + Sbjct: 14 LGEYIREQRRNAEYSVRQLAQAAGVSNPYLSQIERG-----LRKPSAEILQQLAKALRIS 68 >gi|227500718|ref|ZP_03930767.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227217176|gb|EEI82525.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 143 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ NLT LA K+GL + + R PS E + KI A + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISEALDCD 57 >gi|254303749|ref|ZP_04971107.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323941|gb|EDK89191.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 182 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 7/136 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R+ + NL+ LA+ + + + + +R P+ +++KI + Sbjct: 8 VSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGN-----PTLSTLWKIANGMQVS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L+ P + T+ E E L + F + V + S + Sbjct: 63 FNTLIAQPKLPYKVTKLAEIEPILDMNGGLKNYSLFSD--IENNFSVYQIEVGKEISWIS 120 Query: 129 GIYAIQTQDTRHKTQD 144 + T + Q Sbjct: 121 EAHLSGTAEFVIVIQG 136 >gi|71725303|ref|YP_272277.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558893|gb|AAZ38102.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 118 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I + + ++ + LA K G D +R P E + KI Sbjct: 8 VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGI-----HLPGVEQLIKI 55 >gi|29171585|ref|NP_808631.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856078|gb|AAO59134.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] gi|320326981|gb|EFW82998.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882666|gb|EGH16815.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330945149|gb|EGH46863.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 117 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I + + ++ + LA K G D +R P E + KI Sbjct: 8 VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGI-----HLPGVEQLIKI 55 >gi|85713744|ref|ZP_01044734.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A] gi|85699648|gb|EAQ37515.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A] Length = 86 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + R+ + L+ LA AG+D + + +R P+ E++ K+ A Sbjct: 10 NLRRLRVKRALSQEALAVDAGIDRSYVGRLERGVEN-----PTVETLDKLATALQ 59 >gi|329666628|gb|AEB92576.1| putative transcriptional regulator, Xre family [Lactobacillus johnsonii DPC 6026] Length = 288 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + I + +++NL+ GLA K + + +K + P E I + Sbjct: 2 RLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSI-----PDIEKIVSLSELFG 55 >gi|295101511|emb|CBK99056.1| Predicted acetyltransferase [Faecalibacterium prausnitzii L2-6] Length = 381 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI ++ E +LT + LA K + + +K + P + + AA ++ Sbjct: 7 GTAIRQLREAKHLTQAELAEKLAVSAKAISKWETAHG-----LPDISLLEPLAAALGVSV 61 Query: 70 CQLLD 74 +L+ Sbjct: 62 LELMQ 66 >gi|238019742|ref|ZP_04600168.1| hypothetical protein VEIDISOL_01617 [Veillonella dispar ATCC 17748] gi|237863266|gb|EEP64556.1| hypothetical protein VEIDISOL_01617 [Veillonella dispar ATCC 17748] Length = 91 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 A+ + E LT LA+K+G+ ++ + ++ S ++ KI A Sbjct: 35 AVLKAREAAGLTQRDLAKKSGVPQSTIARIEKGANT------SLSTMCKIAFAL 82 >gi|256823032|ref|YP_003146995.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796571|gb|ACV27227.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 70 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 5/68 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H ++ I H ++ LA G+ + + + PST KI Sbjct: 2 HPELDNRIRVFRAEHRMSQGELAEAIGVSRKTISTIEVGKFV-----PSTIIALKIAEYF 56 Query: 66 NETICQLL 73 + ++ Sbjct: 57 KVPVEEVF 64 >gi|227485416|ref|ZP_03915732.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236546|gb|EEI86561.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 143 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ NLT LA K+GL + + R PS E + KI A + I Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISEALDCDI 58 Query: 70 CQLLDLPFSDGRTTEK 85 L++ + Sbjct: 59 SALINHEPNSIFEIMH 74 >gi|148977326|ref|ZP_01813940.1| transcriptional regulator, XRE family protein [Vibrionales bacterium SWAT-3] gi|145963439|gb|EDK28703.1| transcriptional regulator, XRE family protein [Vibrionales bacterium SWAT-3] Length = 186 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 9/145 (6%), Positives = 38/145 (26%), Gaps = 6/145 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + K+ + R+ + + A+ G+ + + P+ +++I Sbjct: 1 MQTEIKVGTNLKRLRQEKGWSLDKAAKATGVSKAMLGQIELGES-----SPTVAKLWQIA 55 Query: 63 AATNETICQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + + ++ T+ + E+ + G + + + Sbjct: 56 SGFEVSFSSFITESSNNELTSLFRDANELRREEYNVGFFVSLLFPFEEALGFEIFELTLA 115 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTS 146 + + + Sbjct: 116 PGYQHESDPHNTGVTEHILCIAGEM 140 >gi|197117932|ref|YP_002138359.1| XRE family transcriptional regulator [Geobacter bemidjiensis Bem] gi|197087292|gb|ACH38563.1| transcriptional regulator, XRE family [Geobacter bemidjiensis Bem] Length = 65 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ ++ E ++ + LAR AG+ P + ++ +R E+ KIL A + Sbjct: 2 IMNSVKKLREERLMSKAELARLAGVSPITIDRIERGE------DCRMETKRKILLALGFS 55 Query: 69 ICQLLDLPF 77 + + Sbjct: 56 LSDKQKVFQ 64 >gi|254366483|ref|ZP_04982527.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|134151995|gb|EBA44040.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] Length = 252 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E + + + LA G+ + +R R P ++ K+ Sbjct: 1 MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGA-----RKPHKSTVQKVEN 55 Query: 64 ATN 66 Sbjct: 56 GLG 58 >gi|89897113|ref|YP_520600.1| hypothetical protein DSY4367 [Desulfitobacterium hafniense Y51] gi|89336561|dbj|BAE86156.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 75 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 + I R + LT LARK G+ + +K + Sbjct: 3 KNICRYRKEKGLTQEELARKLGVTFQAVSKWE 34 >gi|117920280|ref|YP_869472.1| putative prophage repressor [Shewanella sp. ANA-3] gi|117612612|gb|ABK48066.1| putative prophage repressor [Shewanella sp. ANA-3] Length = 274 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%) Query: 119 GVPEIRSPHNGIYAIQTQDTRHKT-QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176 E+R+ + + + T Q SM DILI++ + G +++ Sbjct: 156 DYSELRTNLDDLLVLHPCATWFGVAQGDSMQDEGIYDRDILIIDRQVNALQG-AVIVAQL 214 Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 G+ + K+ +R L+S N Y + D Sbjct: 215 NGEFICKIFDKKRR---MLLSANPQYHAVPIRDCD 246 >gi|77412917|ref|ZP_00789121.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161057|gb|EAO72164.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 76 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + + L +A G+ +++ + E P+ E++ K+ Sbjct: 14 KRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSE-----PNLENVVKLAKLF 63 >gi|317405664|gb|EFV85961.1| hypothetical protein HMPREF0005_01323 [Achromobacter xylosoxidans C54] Length = 86 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESI 58 T + +++ + ++ LT + A + G+ + + +R + G +R SI Sbjct: 5 TVRTAEQLPALLQAFRKKAGLTQAAAALRLGITQQTLSALERNAEKVGADRLLQLLSI 62 >gi|311742888|ref|ZP_07716696.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] gi|311313568|gb|EFQ83477.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] Length = 259 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 17/45 (37%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 I I E ++ L+R+ + P+ ++ +R R Sbjct: 31 IGHRIRSAREAAGISVRELSRRLEVSPSHVSQVERGLASFSVRAL 75 >gi|289422564|ref|ZP_06424407.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] gi|289157136|gb|EFD05758.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] Length = 69 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 5/52 (9%), Positives = 18/52 (34%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 ++ + + + L+ + LA G+ + + + + +I Sbjct: 6 QLKNRLKDIRKELGLSQTDLANMVGVSRNTISSIETGQFNPTAKLALILAIA 57 >gi|302531995|ref|ZP_07284337.1| hypothetical protein SSMG_08377 [Streptomyces sp. AA4] gi|302440890|gb|EFL12706.1| hypothetical protein SSMG_08377 [Streptomyces sp. AA4] Length = 148 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 EA+ + L+ LAR A + P + + R P +S+ +I AA + Sbjct: 12 EALAAARRQRGLSRGDLARLADISPAAVASLETG-----RRQPQVDSLARIAAALGIAVR 66 Query: 71 QLLDLPFSDGR 81 L+ +P Sbjct: 67 DLVPIPDEQRH 77 Score = 35.5 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 13/33 (39%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 + + LT + LA G+ PT +R Sbjct: 78 LSDLRVHAGLTQAALAAAIGVSPTRLGALERAE 110 >gi|229051388|ref|ZP_04194893.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676] gi|228721957|gb|EEL73397.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676] Length = 112 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 15/46 (32%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + ++ + T L GL + + + + R S Sbjct: 3 GDRVKQLRKSKGWTQGELGDAVGLKKATISLIENNKRDRSERSVSV 48 >gi|221113124|ref|XP_002159017.1| PREDICTED: similar to transposase-like, partial [Hydra magnipapillata] Length = 218 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 4/110 (3%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S KI I + L+ +A+K G+ TS + K NR + K Sbjct: 6 DLSPTKIG-FIKALINEKTLSQREIAKKCGISHTSVQRPKLTIKIKENR---LKWALKYK 61 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 T E Q+ S + K + + + +PT Sbjct: 62 NFTVEDWKQVCFSDESTFQVMTNKAQYVRRKISEKYHEDCVIKTVKYPTS 111 >gi|219667624|ref|YP_002458059.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537884|gb|ACL19623.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 63 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + N++ LA++ + + N + + P+ FK+ T+ Sbjct: 3 NNIRQYRKEKNISQEDLAKRCNVSRQTINAIENNKYD-----PTLSLAFKLAEVLQVTVD 57 Query: 71 Q 71 + Sbjct: 58 E 58 >gi|218289603|ref|ZP_03493823.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218240253|gb|EED07436.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 436 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 48/193 (24%), Gaps = 25/193 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + I + + +T S LAR GL + ++ + PS + + I A Sbjct: 2 ETLGQKIRALRKARGMTQSELAR--GLATASMISQIESDRT-----MPSAQLLAHIAARL 54 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + + L + ++ P Sbjct: 55 GVDVSEFQRELAGSSEEAHTYRRAKQLAEQGHYEEAIRH----------FLSLSWPLHTQ 104 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVAK 183 + D K D G + GD ++ G + + Sbjct: 105 FRAELVFQDMGDCYLKAGDYEQAARLYDGLVW-----AGFARGDMSSVVRGYYYGALARR 159 Query: 184 VLISRRGRSIDLM 196 L + L Sbjct: 160 RLQRDEEAILYLE 172 >gi|253700083|ref|YP_003021272.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774933|gb|ACT17514.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 114 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 14/43 (32%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 S +I I R + L+ LA G+ K + Sbjct: 6 SSAEIGTLIRRYRQDAGLSQEKLAEMVGVSFQQIQKYENGHTT 48 >gi|167564668|ref|ZP_02357584.1| DNA-binding protein [Burkholderia oklahomensis EO147] Length = 200 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 7/142 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 22 RVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 76 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ +L P + +IP L + + +W + +P + Sbjct: 77 SLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGKFEWYELTLPANGAL 136 Query: 127 HNGIYAIQTQDTRHKTQDTSML 148 + + + S+ Sbjct: 137 VSNPHE-PGTREHLTVLNGSVE 157 >gi|56419027|ref|YP_146345.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] gi|56378869|dbj|BAD74777.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] Length = 121 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + ++ N+T LA K L ++ +R R PS E + ++ N T Sbjct: 4 GKRLRFLRKKMNMTQKDLADKFSLGESTIGMYERDE-----REPSFEFVRQLADFFNVTT 58 Query: 70 CQLLDLPFSDGRTTEKK 86 LL + + Sbjct: 59 DYLLGRTDHPNPSEQDD 75 >gi|317471753|ref|ZP_07931093.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] gi|316900776|gb|EFV22750.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] Length = 159 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 5/103 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +KI I + LT + LA G+ + +K + P K+ A + Sbjct: 4 QKIGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKC-----LPDLSLHEKLCDALH 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T+ +L+ + + ++ Sbjct: 59 ITLNELVAGQDIESTQLPEASEQNMKTMLGSCQHLRSLKDVCI 101 >gi|259157933|gb|ACV97145.1| putative transcriptional regulator XRE family [uncultured bacterium] Length = 115 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 R L+ + +A + G ++ + + + PS ++ K A + Sbjct: 37 RARAEAGLSQAQVAERVGTTQSAIARLESG---AQRHSPSIATLQKYAKALDY 86 >gi|306828752|ref|ZP_07461944.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304428930|gb|EFM32018.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 165 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + + + LA + + S +K + + P E I ++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T LL S+ +T +E Y+ S G + Sbjct: 57 TTDYLLLDENSEKSSTAVILEEDKDKYYREVKSFGLWQVIYI 98 >gi|237733689|ref|ZP_04564170.1| phosphoribosylformylglycinamidine cyclo-ligase [Mollicutes bacterium D7] gi|229383287|gb|EEO33378.1| phosphoribosylformylglycinamidine cyclo-ligase [Coprobacillus sp. D7] Length = 415 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + K+ E I + LT LA K + + +K + G+ P+ E + + Sbjct: 1 MINVNKVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGGL------PNVEILSDLA 54 Query: 63 AATNETICQ 71 A T+ + Sbjct: 55 ALLEITVDE 63 >gi|225405316|ref|ZP_03760505.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme DSM 15981] gi|225043159|gb|EEG53405.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme DSM 15981] Length = 130 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 5/99 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + I + +T LA K + + +K +R P S+ + A Sbjct: 2 EKTLGMIIAEHRKEKGMTQLELAEKMRVTDKAVSKWERDLS-----CPDIHSLPNLAAIL 56 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 +I L+ + +++ ++ + +L+ + + G Sbjct: 57 GISIDDLMQIKREVPVSSKNPKEVMDILFKAVALAMGIA 95 >gi|212712673|ref|ZP_03320801.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens DSM 30120] gi|212684589|gb|EEB44117.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens DSM 30120] Length = 91 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + R LT S LA++ + ++ + S + + + A Sbjct: 9 NNIGRMLKDYRRRTGLTGSELAKRINVSQQQISRYENGVNN-----ISFDKLIILFNALE 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 + + + + + Sbjct: 64 MSSRDIDVFFEKMKYLFDSSVYKNSKI 90 >gi|188589861|ref|YP_001921889.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E3 str. Alaska E43] gi|188500142|gb|ACD53278.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E3 str. Alaska E43] Length = 160 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + E +LT L + G+ ++ K + G R + ++ K L + Sbjct: 2 EIKDIIRKRREELDLTYEQLGKIVGVGKSTVRKWETGM-IGNLRSDNILALAKGLNLSPS 60 Query: 68 TICQLLDLPFSD 79 T+ + + Sbjct: 61 TLMGWTEEENTY 72 >gi|167755461|ref|ZP_02427588.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] gi|167704400|gb|EDS18979.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] Length = 426 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + K+ E I + LT LA K + + +K + G+ P+ E + + Sbjct: 12 MINVNKVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGGL------PNVEILSDLA 65 Query: 63 AATNETICQ 71 A T+ + Sbjct: 66 ALLEITVDE 74 >gi|167746942|ref|ZP_02419069.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] gi|167653902|gb|EDR98031.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] Length = 159 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 5/103 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +KI I + LT + LA G+ + +K + P K+ A + Sbjct: 4 QKIGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKC-----LPDLSLHEKLCDALH 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T+ +L+ + + ++ Sbjct: 59 ITLNELVAGQDIESTQLPEASEQNMKTMLGSCQHLRSLKDVCI 101 >gi|126738207|ref|ZP_01753928.1| possible transcriptional regulator, XRE family protein [Roseobacter sp. SK209-2-6] gi|126720704|gb|EBA17409.1| possible transcriptional regulator, XRE family protein [Roseobacter sp. SK209-2-6] Length = 161 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 5/108 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ I A+ E LT S +A G+D + ++ + ++I +I Sbjct: 50 HRAIVRAVREAKESRGLTQSDIAESMGVDKSVVSRILNGKGN-----LTLQTIGEISWVL 104 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + ++ + P S FF + F Sbjct: 105 GLRPDLVFSNAAPKDFPGNNHYQQDLRVDRPGSSGASFFQTSEFAANQ 152 >gi|125719074|ref|YP_001036207.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498991|gb|ABN45657.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 74 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|161525328|ref|YP_001580340.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160342757|gb|ABX15843.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 224 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 13/159 (8%), Positives = 40/159 (25%), Gaps = 22/159 (13%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA + G+ + + +R P+ + K+ A Sbjct: 34 NERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAA-----SPTAVVLDKLAAGL 88 Query: 66 NETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ ++ + +P+ + V P Sbjct: 89 GISLAGLFGGDDGAPAQPLVRRAQQAEWRDPASGYARRNLSPPGWPSPLQLVEVDFPPGA 148 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 + + + + Sbjct: 149 ----------------RVAYDTGAREIAWHQQIWVVRGR 171 >gi|10956667|ref|NP_066803.1| putative repressor protein [Rhodococcus equi] gi|31983897|ref|NP_858505.1| repressor protein [Rhodococcus equi] gi|197313525|ref|YP_002149570.1| putative helix turn helix protein [Rhodococcus equi] gi|197313592|ref|YP_002149636.1| putative helix turn helix protein [Rhodococcus equi] gi|10657914|gb|AAG21753.1| putative repressor protein [Rhodococcus equi] gi|10801105|dbj|BAB16659.1| Putative repressor protein (trbA) [Rhodococcus equi] gi|197092567|emb|CAQ30306.1| putative helix turn helix protein [Rhodococcus equi] gi|197092634|emb|CAQ30377.1| putative helix turn helix protein [Rhodococcus equi] gi|297718607|gb|ADI50222.1| putative helix-turn-helix protein [Rhodococcus equi] Length = 148 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + L+ S L R +G+ + + + P+ + + ++ Sbjct: 12 ARLKELRGEKGLSRSDLGRLSGVPYNTIRRWETGNS-----APAPDLLARVAEVLG 62 >gi|85711642|ref|ZP_01042699.1| DNA-binding protein [Idiomarina baltica OS145] gi|85694502|gb|EAQ32443.1| DNA-binding protein [Idiomarina baltica OS145] Length = 63 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + N T + LA+ + + N + + PS FKI TI Sbjct: 3 NRLKVLRAERNWTQNDLAQALSVSRQTINAIETGKFD-----PSLPLAFKIAKVFQCTIE 57 Query: 71 QLL 73 + Sbjct: 58 DVF 60 >gi|332188239|ref|ZP_08389967.1| helix-turn-helix family protein [Sphingomonas sp. S17] gi|332011738|gb|EGI53815.1| helix-turn-helix family protein [Sphingomonas sp. S17] Length = 68 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 16/45 (35%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 ++ + + E LT GLA G+ + N + + Sbjct: 2 NETLGNDLKAAREAAGLTQGGLAEAIGVSRKTINTVENGVFQPST 46 >gi|309777026|ref|ZP_07671995.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915236|gb|EFP61007.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 147 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 3/105 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + E++NLT LA + + + ++ + + + ++ + Sbjct: 2 EIQGILKNLREKNNLTQEQLAERVQVTRQAVSRWETGETQPNTDTLKL--LSRVFDVSIN 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 T+ ++ + P + + G Sbjct: 60 TLLGSPRQL-VCQCCGMPLNEDGLISREPDGSYNEDYCKWCYANG 103 >gi|302536851|ref|ZP_07289193.1| nickel-type superoxide dismutase maturation protease [Streptomyces sp. C] gi|302445746|gb|EFL17562.1| nickel-type superoxide dismutase maturation protease [Streptomyces sp. C] Length = 144 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198 + SM+P GD L + V GD ++ + + +V K RR ++ Sbjct: 20 EVTGPSMVPTLVHGDRLAVRYGGLVRPGDVVVFRHPLQQDLLVVKRAAERRPGGWWMLGD 79 Query: 199 NC 200 N Sbjct: 80 NP 81 >gi|302672234|ref|YP_003832194.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396707|gb|ADL35612.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 374 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 37/154 (24%), Gaps = 8/154 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + NLT LA + + S ++ + P I I Sbjct: 2 NNLGSKIKELRIAENLTQEKLAEELNVSFQSISRWENGIST-----PDISLIPAIARFFG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--NTVGVPEIR 124 + L L + + + E + G+ + + + + Sbjct: 57 VSTDYLFGLQDEESEAEKSEL-EAAYWDYRKEGNLDEAYEVMLKARKLFPRDMHFCSNLA 115 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 ++ ++ ++ Sbjct: 116 EVMELFDGGNSEQMSAYVNGNFSEQIFSLCRRVV 149 >gi|290962183|ref|YP_003493365.1| regulatory protein [Streptomyces scabiei 87.22] gi|260651709|emb|CBG74834.1| putative regulatory protein [Streptomyces scabiei 87.22] Length = 198 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 7/133 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ + T +GL+ G+ ++ ++ + R PS E + I A Sbjct: 18 VGPRLRRIRKEREATLAGLSEATGISVSTLSRLESG-----LRKPSLELLLPIARAHQVP 72 Query: 69 ICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P + Y+P + G + P + Sbjct: 73 LDELIGEPPVGDPRVRSKPIRRHGRTYWPLTRQPGGLQAFKVLVPQSKQE-PEPRTHEGY 131 Query: 128 NGIYAIQTQDTRH 140 +Y + + Sbjct: 132 EWLYVMSGKLRVV 144 >gi|239814885|ref|YP_002943795.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801462|gb|ACS18529.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 182 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 40/137 (29%), Gaps = 8/137 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-ICQ 71 I + ++ + LA + G+ + ++ +R + PS E++ +I N Sbjct: 5 IKALRMAAGISGNELAHRCGVSGSLLSRVERGLV-----SPSVETLNRIAVGLNVPLSRF 59 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI- 130 D + + I + + G +GN + + + Sbjct: 60 FCDHARRTDWSFVPAGRGIVVGRIGAVKDYRYELLGHLLSGNLFVEPYLVTLLPQAEPYS 119 Query: 131 -YAIQTQDTRHKTQDTS 146 + + + Sbjct: 120 SFQHPGIKFLYVISGRA 136 >gi|225571094|ref|ZP_03780111.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] gi|225160175|gb|EEG72794.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] Length = 158 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 12/131 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP---------STESIFKI 61 E I + + ++LT LA K + S +K + +T+ + K Sbjct: 10 EKILTLRKSNDLTQEELAEKLNVSRQSVSKWESGQAVPELEKIVALSSVFNVTTDYLLKP 69 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 ++ + +K++ + + V G+ + Sbjct: 70 AEIDELSVKTNILEKQQQQILLREKQRNKIVRCVMYAVGVYLLFFAVAFIGH---YIAFD 126 Query: 122 EIRSPHNGIYA 132 + I++ Sbjct: 127 FGFGNPSIIFS 137 >gi|197261593|ref|YP_002154410.1| helix-turn-helix domain protein [Bacillus phage IEBH] gi|197092465|gb|ACH42340.1| helix-turn-helix domain protein [Bacillus phage IEBH] gi|283765986|gb|ADB28402.1| helix-turn-helix domain protein [Bacillus phage 250] Length = 137 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + E+ T + ++ K ++ + + + R P E++ K+ Sbjct: 25 NLNERLKACREKKGYTQTFISEKLDVNKATLSSYESG-----RRKPDYETLTKLADIYEV 79 Query: 68 T 68 + Sbjct: 80 S 80 >gi|116873702|ref|YP_850483.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742580|emb|CAK21704.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 115 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + +++ LT LA K G ++ +K + P + K+ T Sbjct: 4 GEKLIHLRKKNRLTQKQLAEKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 57 >gi|50842706|ref|YP_055933.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|50840308|gb|AAT82975.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|332675629|gb|AEE72445.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes 266] Length = 548 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 5/105 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + I ++H +T + LA ++ ++ + S E I +I A Sbjct: 45 TPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINRIAEA 99 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 I + R + + + Sbjct: 100 LESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 144 >gi|158318022|ref|YP_001510530.1| helix-turn-helix domain-containing protein [Frankia sp. EAN1pec] gi|158113427|gb|ABW15624.1| helix-turn-helix domain protein [Frankia sp. EAN1pec] Length = 366 Score = 43.6 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I L+ LA +G+ T +K + ++PS + + I A T Sbjct: 14 GERIRAARTLLGLSQGDLAEASGVGQTMISKIESGA-----KYPSDDLLDTIAAVTGTPR 68 >gi|331087042|ref|ZP_08336117.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409492|gb|EGG88935.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 296 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + ++ LA + + +K + P E + ++ + Sbjct: 2 LGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSV-----PDAELLIRLAEVLGIS 56 Query: 69 ICQLLDLPFSDGRTT 83 + +LL + Sbjct: 57 VAELLGTDEQPHSES 71 >gi|325663518|ref|ZP_08151928.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470417|gb|EGC73648.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] Length = 296 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + ++ LA + + +K + P E + ++ + Sbjct: 2 LGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSV-----PDAELLIRLAEVLGIS 56 Query: 69 ICQLLDLPFSDGRTT 83 + +LL + Sbjct: 57 VAELLGTDEQPHSES 71 >gi|326403693|ref|YP_004283775.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050555|dbj|BAJ80893.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 469 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 5/102 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S I + R+ + H LT LA + G+ + N + R + + K+ Sbjct: 1 MSKPLIGRIVRRLRQEHGLTQQKLASRLGISTSYLNLIEHDQ-----RGVTAALLIKLTE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 + L ++ PL+ Sbjct: 56 TLKVDLAALSGSDERQVEQALREAFADPLIGTESVPDSEAQM 97 >gi|323488389|ref|ZP_08093636.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323397896|gb|EGA90695.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 67 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 5/66 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + T L+ K G+ + + + PS E +KI I Sbjct: 3 HRIKELRTSFGYTQEQLSEKLGVSRQTIISIENGRYK-----PSLELAYKIATLFQLRIE 57 Query: 71 QLLDLP 76 + Sbjct: 58 DVFIFE 63 >gi|315173575|gb|EFU17592.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 170 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 5/98 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + N+T LA + G+ P++ + PS I +I Sbjct: 7 MDFIKKYLKESNITQKKLAEEIGISPSTMSDYMNLRSN-----PSHGVIQRIADYFKIKK 61 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + + + + L Sbjct: 62 SDIDTTYKENSDPSSLESIYNILEPERQKIVYETAKEQ 99 >gi|291540195|emb|CBL13306.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 107 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + ++T L++++G+ ++ K + R P + + KI A + Sbjct: 7 IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGE-----RNPKPDQLQKIAEALGIS 61 >gi|288962006|ref|YP_003452316.1| transcriptional regulator [Azospirillum sp. B510] gi|288914286|dbj|BAI75772.1| transcriptional regulator [Azospirillum sp. B510] Length = 486 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + R+ E+ LT + LA+ L P+ N+ + R + + +I A Sbjct: 11 LRRLREQRGLTQASLAKTLELSPSYLNQLENNQ-----RPLTLPVLMRIAATFE 59 >gi|284055750|pdb|3KXA|A Chain A, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae gi|284055751|pdb|3KXA|B Chain B, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae gi|284055752|pdb|3KXA|C Chain C, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae gi|284055753|pdb|3KXA|D Chain D, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae Length = 141 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + T S LA AGL ++ + + +++ K+ A + ++ Sbjct: 75 SLRXKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 129 Query: 75 LPFSDGR 81 Sbjct: 130 AFERRYE 136 >gi|323528479|ref|YP_004230631.1| Cupin 2 barrel domain-containing protein [Burkholderia sp. CCGE1001] gi|323385481|gb|ADX57571.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1001] Length = 215 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 50/168 (29%), Gaps = 28/168 (16%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-------------- 47 + HK + + + + LT + L+ ++G+ ++ +K++R I Sbjct: 18 PALDHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 77 Query: 48 -------GRNRWPSTESIFKILAATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSG 99 GR R P+ ++ A + ++ +P+ + Sbjct: 78 LEFDAIFGRRRKPAAGAMKPSFTAAGKQPVYDTPNYEYGMLANNLTGKRMMPMRAHIHAR 137 Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147 + F + G + + + + R S+ Sbjct: 138 AVSDFPEYIRHAGE-----EFVFLLAGKLELRFENGKSFRLT-PGDSL 179 >gi|221641156|ref|YP_002527418.1| hypothetical protein RSKD131_3057 [Rhodobacter sphaeroides KD131] gi|221161937|gb|ACM02917.1| Hypothetical Protein RSKD131_3057 [Rhodobacter sphaeroides KD131] Length = 212 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 30/218 (13%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 +A+ R + + + KAG+ + ++G++ + + KI AA +I Sbjct: 7 DALARALKETKRSLRSVCLKAGVSY----DQMKSLMQGKSASTNIDDGIKIAAAFGVSIE 62 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 F + + +G+ + G+ V P PH Sbjct: 63 DFFAGVFDRQPSVAVAGR-------VGAGAHVDLVDA-YAKGDGMYHVACPPQLKPHG-- 112 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI------QVNCGDRLLIKPRTGDIVAKV 184 + + SMLPL+R G +L A + + + G KV Sbjct: 113 ------VVAVEVEGDSMLPLHRPGSVLFYTRAAAEGVPVEAINA-PCVCEDVDGRAWLKV 165 Query: 185 LISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 + + L+SLN ++W A +L A Sbjct: 166 VKIGSQEGTFSLLSLNPDSDNMH--GVRLKWAAPVLLA 201 >gi|229814963|ref|ZP_04445301.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] gi|229809450|gb|EEP45214.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] Length = 217 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ER ++ LA+ + + + + P +S+ + T Sbjct: 6 IGTGIRIQRERLGMSQQDLAQACMVSRQTISNWETGKT-----LPDIQSMAYLAEVFGVT 60 Query: 69 ICQ 71 + Sbjct: 61 VDD 63 >gi|172064748|ref|YP_001812398.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171998233|gb|ACB69149.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 115 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E + E + LA KA + P+S + +R PS +++ ++ A Sbjct: 13 ERLRAARELRKWSQGELAEKASMPPSSIAHFESG-----SRKPSFDTLRRLANALE 63 >gi|170690931|ref|ZP_02882097.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170144180|gb|EDT12342.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 207 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ +T L+R AG+ + ++ +R P+ +++ A Sbjct: 29 RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 83 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L + EIP L + + G + + Sbjct: 84 SLDSLFAPQKTPEAIAVAGPHEIPTLSGHDAKYQLRVWGPIELAGK-FEWYEL 135 >gi|159039188|ref|YP_001538441.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918023|gb|ABV99450.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 196 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 11/137 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + T + L+ G+ ++ ++ + R P+ E + + A Sbjct: 10 EAVGPRLRALRRQRETTLTELSANTGVSVSTLSRLESGA-----RRPTLELLLPLARAYG 64 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 T+ +L+ P + + +L G V P G + P+ Sbjct: 65 VTLDELVGAPPTGDPRIHLRPATYNGMTVLPLTRRAGGIQAFKLVIPIGRRE---PEPKT 121 Query: 124 RSPHNGIYAIQTQDTRH 140 ++ +Y + + Sbjct: 122 HDGYDWLYVLNGRLRLI 138 >gi|108936762|emb|CAK48822.1| Sse9I control protein [Sporosarcina sp.] Length = 92 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + L+ LA G+ T +R R P+ +S+ ++ A Sbjct: 19 GQNLRDLRVARGLSQEALAELIGVHRTYMGGLERGE-----RNPTLKSVERVAAHL 69 >gi|14520527|ref|NP_126002.1| inosine-5'-monophosphate dehydrogenase-like protein I [Pyrococcus abyssi GE5] gi|5457743|emb|CAB49233.1| Predicted transcriptional regulator [Pyrococcus abyssi GE5] Length = 192 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 1/123 (0%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + +T LARKAG+ K + ++ R + + +L I Sbjct: 13 IKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNR-ILRALLECQKTRITAK 71 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + + + IY+ Sbjct: 72 SIMSSPIISAKPEDKISDIVKVMEKYNISQVPVIVKDKVVGAITERLLVRKSLEDEDIYS 131 Query: 133 IQT 135 + Sbjct: 132 KRA 134 >gi|148266398|ref|YP_001233104.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399898|gb|ABQ28531.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 355 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E + L AG+ + +R R PS + + K+ + Sbjct: 3 LRELRELAGMKQEALGELAGVTRQTIAAWERGE-----RQPSMQQVVKLCQILH 51 >gi|326796388|ref|YP_004314208.1| peptidase S24/S26A/S26B, conserved region [Marinomonas mediterranea MMB-1] gi|326547152|gb|ADZ92372.1| Peptidase S24/S26A/S26B, conserved region [Marinomonas mediterranea MMB-1] Length = 99 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 11/89 (12%) Query: 139 RHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLM 196 K + SM P GD ++ Q+ G + + T + K ++ + L Sbjct: 4 LFKVEGDSMSPDILDGDFILTFKWFRQIRAGQLVAVDHETYGFIVKRVVKVAQDGQLWLE 63 Query: 197 SLNCCYPVDTVEMSDIEWIA--RI---LW 220 N ++ I W++ R+ +W Sbjct: 64 GTNRN----SLTPERIGWVSPRRVLGKVW 88 >gi|310827340|ref|YP_003959697.1| hypothetical protein ELI_1748 [Eubacterium limosum KIST612] gi|308739074|gb|ADO36734.1| hypothetical protein ELI_1748 [Eubacterium limosum KIST612] Length = 71 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R + S L + AG+ + + +R PS KI N + Sbjct: 3 LKNRLKEFRARDKINQSELGKLAGVSRQTISLIERGDY-----SPSVTLALKIARIFNTS 57 Query: 69 ICQLLDLPF 77 + + Sbjct: 58 VEDIFTYSD 66 >gi|295108696|emb|CBL22649.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 336 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I +++ + LA + G+ + +K + G P + I ++ + Sbjct: 3 LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAV-----PDLQRILQMSELFGVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 LL T + E Sbjct: 58 TDYLLKDEMKAENITYHESTESYAEPL 84 >gi|284055653|pdb|3JXB|C Chain C, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c gi|284055654|pdb|3JXB|D Chain D, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c gi|284055657|pdb|3JXC|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9t In The Presence Of Tl+ gi|284055658|pdb|3JXC|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9t In The Presence Of Tl+ gi|284055661|pdb|3JXD|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c In The Presence Of Rb+ gi|284055662|pdb|3JXD|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c In The Presence Of Rb+ Length = 67 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++ + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 6 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALSKALQCSP 60 Query: 70 CQ 71 Sbjct: 61 DY 62 >gi|290962090|ref|YP_003493272.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260651616|emb|CBG74740.1| putative transcriptional regulatory protein [Streptomyces scabiei 87.22] Length = 190 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 6/124 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS ++ KI A Sbjct: 9 QSLARNVKRWRTERGFTLDALASRAGVSRGMLIQIEQARTN-----PSIGTVVKIGDALG 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125 +I LLD E+ + L + P W+ + +P S Sbjct: 64 VSITTLLDYERGPRVRIVPAEQVVRLWHTEAGSHSKLLAGAEAPGPLEMWDWLLMPGEGS 123 Query: 126 PHNG 129 + Sbjct: 124 RSDP 127 >gi|257877810|ref|ZP_05657463.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811976|gb|EEV40796.1| predicted protein [Enterococcus casseliflavus EC20] Length = 166 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + +++ LT S LA + + +K + +PS +++ K Sbjct: 1 MVEMKETILAMKLKEYRKKNKLTQSMLAELLEVSDKTISKWELGAT-----YPSKKNMIK 55 Query: 61 ILAATNET 68 I + + Sbjct: 56 IAEELDIS 63 >gi|302530702|ref|ZP_07283044.1| transcriptional regulator [Streptomyces sp. AA4] gi|302439597|gb|EFL11413.1| transcriptional regulator [Streptomyces sp. AA4] Length = 187 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 14/143 (9%), Positives = 41/143 (28%), Gaps = 5/143 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R +T + L+ + G+ ++ ++ + R + E + + A + Sbjct: 9 DAVGPRLRALRTRRGITLADLSAETGISESTLSRLENGQ-----RRANLELLLPLSRAYD 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I L+ P + + + + P + S Sbjct: 64 VPIDDLVGAPRAGDPRVHLRPIHQHGMTYVPLTRRPGGVHAYKMLIPGGTAEPALKTHSG 123 Query: 127 HNGIYAIQTQDTRHKTQDTSMLP 149 + +Y + +P Sbjct: 124 YEWLYVLNGHLRLIVGAKDLTVP 146 >gi|291294895|ref|YP_003506293.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290469854|gb|ADD27273.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 84 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I R+ ++ L+ LA +AG+ + K +R G R PS K+ A Sbjct: 7 IRRLRKQAGLSQEALAVEAGITVSLLTKYER----GEVRRPSLVCSRKLARAL 55 >gi|226315195|ref|YP_002775091.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226098145|dbj|BAH46587.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 443 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 3/97 (3%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + I++ +H T S L+ G++P S ++ R + + Sbjct: 2 HRWLRSEIEKCRRKHGYTLSKLSELTGINPGSLSEILNGNP---PRAMTIGQLDAFAKVF 58 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 L +L + + ++ + + Y G Sbjct: 59 GREQGWLYELYPEECLSEQRISRPRLIPYLARCVEVG 95 >gi|218134569|ref|ZP_03463373.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] gi|217989954|gb|EEC55965.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] Length = 268 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ ++ LA K + + ++ + P+TE++ + N + Sbjct: 14 ILQLRTERGMSQDELAEKIMVTRQAVSRWENGETI-----PNTETLKLLSKEFNVS 64 >gi|126731243|ref|ZP_01747050.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126708154|gb|EBA07213.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 206 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + + T A+KAGL ++ +K + + P+ +++ K+ Sbjct: 25 DLGLRVRELRKEKDWTLEQAAKKAGLARSTLSKIENGQM-----SPTYDALKKLATGLEI 79 Query: 68 TICQLLDLPFSDGRTT 83 ++ QL P Sbjct: 80 SVPQLFTPPVQAQANG 95 >gi|52842586|ref|YP_096385.1| hypothetical protein lpg2377 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629697|gb|AAU28438.1| hypothetical protein lpg2377 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 75 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 6/81 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +H+ I I ++ L+ LA AG+ T ++ R ++ K+L Sbjct: 1 MPTHE-IANLIHYYRKKSGLSQQELAHLAGVGKTVIYDIEKGKESVR-----LNTLLKVL 54 Query: 63 AATNETICQLLDLPFSDGRTT 83 N + P + + Sbjct: 55 DVLNIQMKFETPFPQTTDNNS 75 >gi|25010546|ref|NP_734941.1| hypothetical protein gbs0475 [Streptococcus agalactiae NEM316] gi|23094899|emb|CAD46119.1| Unknown [Streptococcus agalactiae NEM316] Length = 112 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 5/86 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + LT LA+ + ++ +R P +SI K+ N + Sbjct: 4 EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKG-----SRNPKHKSIEKLANVFNVSTD 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFP 96 LL EK L Sbjct: 59 YLLGNTDLKNPNDLDIEKVKQSLKKS 84 >gi|126172576|ref|YP_001048725.1| XRE family transcriptional regulator [Shewanella baltica OS155] gi|125995781|gb|ABN59856.1| transcriptional regulator, XRE family [Shewanella baltica OS155] Length = 191 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 15/164 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + A++ G+ + +R P+ +++KI + N + Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNFS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ +K E+ G + + + + Sbjct: 63 LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171 + + ++++ + G+ + Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157 >gi|326387376|ref|ZP_08208985.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Novosphingobium nitrogenifigens DSM 19370] gi|326208032|gb|EGD58840.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Novosphingobium nitrogenifigens DSM 19370] Length = 423 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I R+ ++ SGLAR AGL + + P+ E++ K+ +E Sbjct: 4 DLIDRIRRLVTEGGMSRSGLARAAGLHANTLRDLTQANWN-----PTAETLAKLERVLSE 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + + +P + + + L+ + G Sbjct: 59 SDETQVLVPIEEIIDEARNGRMFILVDDEDRENEG 93 >gi|325262228|ref|ZP_08128966.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033682|gb|EGB94959.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 643 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 10/93 (10%), Positives = 29/93 (31%), Gaps = 9/93 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H+ + + T + +A K + +++ + R P E++ + Sbjct: 1 MKTKFHE----YLVLFRKLKGYTQAQMAEKLEISRSTYTNYEIGN-----RSPDLETLER 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I ++ +L + + Sbjct: 52 ISEVLECSLDELFGKTPVRTADMVSETPVPYRV 84 >gi|295101106|emb|CBK98651.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 110 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 5/99 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I IDR + LA +GL ++ + +R ++ P+ SI KI Sbjct: 9 DILGRIDRERLARGWSEYTLAENSGLTQSTLSTWRRRNLQ-----PNVTSIEKICHGLGI 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 T+ Q + + TE+++ + + Sbjct: 64 TLSQFFEEDTAVHHLTEEQKSLLTIWDRLSPSQRIAILD 102 >gi|218755745|ref|ZP_03534541.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] Length = 99 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E + + + LA G+ + +R R P ++ K+ Sbjct: 1 MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGA-----RKPHKSTVQKVEN 55 Query: 64 ATN 66 Sbjct: 56 GLG 58 >gi|308535325|ref|YP_002139718.2| helix-turn-helix transcriptional regulator PuuR [Geobacter bemidjiensis Bem] gi|308052670|gb|ACH39922.2| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing protein [Geobacter bemidjiensis Bem] Length = 181 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 5/83 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + R+ ++LT LA +A L ++ + PS ++ I+ Sbjct: 2 KIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDAT-----SPSIATLKDIVDVFGI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90 ++ + K+ + Sbjct: 57 SMQEFFSEETDQDIVFGKEARVQ 79 >gi|153828429|ref|ZP_01981096.1| DNA polymerase V subunit [Vibrio cholerae 623-39] gi|148876138|gb|EDL74273.1| DNA polymerase V subunit [Vibrio cholerae 623-39] Length = 135 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 SM + D+LI++ ++ V D ++ G+ + K + R Sbjct: 37 PCATFLGYACGDSMQDVGIFDKDLLIVDRSLDVQDFDIIV-ANLNGEFICKQIDL--NRR 93 Query: 193 IDLMSLNCCYPVDTVEM 209 + L+S N Y + Sbjct: 94 L-LLSANERYQPVPIHE 109 >gi|125622890|ref|YP_001031373.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124491698|emb|CAL96617.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300069628|gb|ADJ59028.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 107 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + NL+ LA++ + S +K + P+T+ + + + Sbjct: 2 EISEIIKENRKLKNLSQEELAKELHISRQSISKWETGKS-----LPTTDQLILLSEIFDC 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 ++ LL + + + L GF +F Sbjct: 57 SLDTLLKGDKKMEEKVKHEIDDKRTLKLIYKVGWGFIVPLLF 98 >gi|302531744|ref|ZP_07284086.1| predicted protein [Streptomyces sp. AA4] gi|302440639|gb|EFL12455.1| predicted protein [Streptomyces sp. AA4] Length = 490 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 EA+ LT + LA+ G+ T +K + G + E I +I + Sbjct: 26 EALTAYRNSRGLTQTDLAKLLGIHQTYLSKIE----SGHRKVFDIELILRIASQLELDPE 81 Query: 71 Q 71 + Sbjct: 82 E 82 >gi|296450086|ref|ZP_06891848.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296878467|ref|ZP_06902473.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|296261094|gb|EFH07927.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296430551|gb|EFH16392.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 78 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++ + ++ L A+ + + + + PS E F+I +I ++ Sbjct: 18 VEALRKKKGLNQEDFAKILKVSRQTISSIENGKYN-----PSLELAFQISDFFEMSIEEI 72 Query: 73 LDLPF 77 Sbjct: 73 FLWKE 77 >gi|296270730|ref|YP_003653362.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093517|gb|ADG89469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 192 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 17/179 (9%), Positives = 43/179 (24%), Gaps = 23/179 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + +T LA ++ + + ++ PS ++ +I A + Sbjct: 11 IAANVRSLRGQRGMTLDELAARSKVSRGMLIQIEQGRTN-----PSINTLNRIAEALGVS 65 Query: 69 ----------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + P LL + + G ++ Sbjct: 66 IGRLVEVADVPVVRIVQPSEAVTFQHGASSSARLLIGSDAPAILELWDWRLGPGEHYDGD 125 Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL---NSAIQVNCGDRLLIK 174 P + + S +G ++ N G+ + Sbjct: 126 AHPPGTREMLTVLEGE---LTLTVYGQS--HTIGEGAAVVFSADRPHRYANHGEGPVRF 179 >gi|299822633|ref|ZP_07054519.1| signal peptidase I [Listeria grayi DSM 20601] gi|299816162|gb|EFI83400.1| signal peptidase I [Listeria grayi DSM 20601] Length = 180 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 3/82 (3%) Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174 W V I + + SM+P D +I+N ++ D ++ + Sbjct: 12 WIWAAVIAILLATIIRFYLFVPIF---VDGISMMPSLHNDDRVIINRFANIDRFDVIVFR 68 Query: 175 PRTGDIVAKVLISRRGRSIDLM 196 G K +I G I Sbjct: 69 ENDGTEYIKRVIGLPGDHIRFH 90 >gi|229084128|ref|ZP_04216417.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] gi|228699164|gb|EEL51860.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] Length = 149 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 +LL + + K++ + F Sbjct: 60 ELLRSDEELKQKVIQDSKQLAHPKWKMFFDSVFM 93 >gi|146321094|ref|YP_001200805.1| Cro/CI family transcriptional regulator [Streptococcus suis 98HAH33] gi|253751963|ref|YP_003025104.1| DNA-binding protein [Streptococcus suis SC84] gi|253753788|ref|YP_003026929.1| DNA-binding protein [Streptococcus suis P1/7] gi|253755336|ref|YP_003028476.1| DNA-binding protein [Streptococcus suis BM407] gi|145691900|gb|ABP92405.1| Transcriptional regulator, Cro/CI family [Streptococcus suis 98HAH33] gi|251816252|emb|CAZ51880.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251817800|emb|CAZ55552.1| putative DNA-binding protein [Streptococcus suis BM407] gi|251820034|emb|CAR46239.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|292558544|gb|ADE31545.1| Transcriptional regulator, Cro/CI family [Streptococcus suis GZ1] gi|319758328|gb|ADV70270.1| Cro/CI family transcriptional regulator [Streptococcus suis JS14] Length = 71 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 15/40 (37%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + + R L + LA+ A + + + +R Sbjct: 5 LKNRLKELRARDGLNQTELAKLAEVSRQTISLIERGEYTP 44 >gi|254252819|ref|ZP_04946137.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158] gi|124895428|gb|EAY69308.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158] Length = 232 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 21/174 (12%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA ++G+ + + +R P+ + K+ A Sbjct: 40 NERIARRVRDLRATRGYTLDALAARSGVSRSMISLVERASA-----SPTAVVLDKLAAGL 94 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTG 112 ++ L +D T + + P+ FP G Sbjct: 95 GVSLAALFSGDRNDTPTLPLVRRAEQAEWRDPASGYVRRNLSPPGWPSPIQLVEVDFPPG 154 Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + H ++ I+ + S L R+GD L + + Sbjct: 155 ARVAYDTGGRDSVMHQQVWVIRGR---IDVTCGSELHELREGDCLAMRLDAPLI 205 >gi|91777117|ref|YP_552325.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91689777|gb|ABE32975.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 208 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ +T L+R AG+ + ++ +R P+ +++ A Sbjct: 30 RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 84 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L + EIP L + + G + + Sbjct: 85 SLDSLFAPQKTPEAIAVSGPHEIPTLSGRDARYQLRVWGPIELAGK-FEWYEL 136 >gi|6010627|gb|AAF01192.1|AF179401_1 putative epoxidase [Sinorhizobium meliloti] Length = 176 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 47/189 (24%), Gaps = 25/189 (13%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T I I + R L LA GL P +K +R + +P+ ++ +I Sbjct: 8 TELQRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQM-----FPTLPTLLRI 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + + ++++ L PP F + ++ P Sbjct: 63 AMVFGVGLDHFFNADKEEPLIAIVRKEQRLKLPSPPGEKHPAF---------LFESLDYP 113 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTG 178 YA P I + + + G Sbjct: 114 ASDRRMEAFYAE------FPVDSPPSEPHQHGSAEFIYVAQRSAYSQCEWQGV--RAGYG 165 Query: 179 DIVAKVLIS 187 L Sbjct: 166 GRCVFRLER 174 >gi|322384169|ref|ZP_08057879.1| transcriptional repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151061|gb|EFX44378.1| transcriptional repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 139 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/110 (10%), Positives = 34/110 (30%), Gaps = 7/110 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + T L+ ++G+ ++ + PS E + K+ N + +L Sbjct: 7 LRDLRKLKGYTIRELSDRSGVSTAYISQLENGNRG----IPSPEVLMKLSEGLNISYEEL 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYF---PPSGSGGFFDSGVFPTGNKWNTVG 119 +++ ++ + P G+ T + Sbjct: 63 MEIAGYLQTSSHSSGGDKPKSPVNLRRFLHENEVIFDGILLTEQDKEWME 112 >gi|300865911|ref|ZP_07110650.1| transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300336081|emb|CBN55808.1| transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 96 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 24/73 (32%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++ + ER LT + +A + G+ TS + E ++ T E + Sbjct: 3 LEALRERAGLTRAEVAVRLGISETSVRNWETGRTEPTMTPNKYLEALQLFQCTPEEMATA 62 Query: 73 LDLPFSDGRTTEK 85 + + Sbjct: 63 SQKSMNQRHKRKP 75 >gi|325677790|ref|ZP_08157432.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324110344|gb|EGC04518.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 197 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + E LT + A G + + + R P + I Sbjct: 137 IGRKIQKYREERGLTRNEFAEMLGCVMPTIQRWESGT-----RVPDVTMLMHIAKVLGVG 191 Query: 69 ICQ 71 + Sbjct: 192 VED 194 >gi|289434995|ref|YP_003464867.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171239|emb|CBH27781.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 115 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 1/72 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + + LA + G+ ++ + + IE +S+ IL T Sbjct: 2 QTGERIKKRRKELGYNADYLAEELGVSRSTIFRYENGEIEKLPITI-LDSLSNILKTTPA 60 Query: 68 TICQLLDLPFSD 79 + +D Sbjct: 61 YLMGWVDDGAEH 72 >gi|253690628|ref|YP_003019818.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757206|gb|ACT15282.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 188 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 8/103 (7%), Positives = 28/103 (27%), Gaps = 6/103 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +H +I + + + + + + + G+ + +R P+ +++KI Sbjct: 5 LTH-RIGNTLKTLRQEKGWSLTRSSEETGVSKAMLGQIERGES-----SPTVATLWKIAT 58 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 N + ++ + Sbjct: 59 GLNVAFSTFIQPTLAEEDVAYRSVANSAFREREAGMHVVPIFP 101 >gi|227112403|ref|ZP_03826059.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 197 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ +I R ER NL+ + LA++AGL ++ ++ + PS E+++ + A + Sbjct: 22 RLAVSIRRERERLNLSVTELAKRAGLAKSTLSQLETGIGN-----PSLETLWALAMALDV 76 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + QL+ P + E Sbjct: 77 QVSQLIGQPRQHVQVIRANEGAATY 101 >gi|269957018|ref|YP_003326807.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305699|gb|ACZ31249.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 190 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 7/136 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + LT S LA + GL ++ ++ +R I P+ E + + Sbjct: 9 DNVGPRLRAFRQALRLTLSDLAEQTGLTSSTISRLERSQIR-----PTLEQLLPLARVYG 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE--IR 124 + +L+ P + L F P G + + P Sbjct: 64 VPLDELVAAPAHGDPRVHLRPIRRDGLTFVPLGINRGQLQAYKVIYPPESRMASPRYHSH 123 Query: 125 SPHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 124 AGREWLYVLHGEVRLV 139 >gi|218134755|ref|ZP_03463559.1| hypothetical protein BACPEC_02658 [Bacteroides pectinophilus ATCC 43243] gi|217990140|gb|EEC56151.1| hypothetical protein BACPEC_02658 [Bacteroides pectinophilus ATCC 43243] Length = 187 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 47/144 (32%), Gaps = 7/144 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M SH + + R+ + ++ +A + G+ + + ++ PS + K Sbjct: 1 MDYLSH-NVSVNLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTAN-----PSLGVLGK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + +L+D P D +E F + + + V Sbjct: 55 ITSGLRIEFQELIDPPRIDNCLVSPEEIIPTKEMLGQYKVWTCFPYEDSQSVEVY-RIDV 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 + +G + +T++ T Sbjct: 114 EPGGTYTSGSHGEKTREYIAVTDG 137 >gi|229815066|ref|ZP_04445403.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM 13280] gi|229809296|gb|EEP45061.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM 13280] Length = 391 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 5/75 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + +T LA G+ S K + +P + + K+ ++ Sbjct: 6 NLQYLRAERRMTQEQLAMLLGVSRQSVTKWE-----AEKSYPEMDKLIKMCQIFECSLDD 60 Query: 72 LLDLPFSDGRTTEKK 86 L+ S + Sbjct: 61 LVQGDVSRHGVPSRD 75 >gi|158421618|ref|YP_001527845.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300] gi|158342861|gb|ABW35147.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300] Length = 610 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 50/165 (30%), Gaps = 7/165 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +LT LA + G+ + N+ + G + + + E+I + + Sbjct: 14 LRTIRSALDLTQEQLAERLGVSFATVNRWEGGGN--KPQRAAQETILALAREAGVEGAES 71 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVPEIRSPH 127 + + T ++ +D+ G K + + Sbjct: 72 PSAADAAAQVTRRRTGRAAAAPTTKPMEQMLWDAACSIRGEKEAAKFKDYLLPLLFLKRL 131 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 + ++ + + + D + + D +L + ++ Sbjct: 132 SDVFDDEIERLAEEYGDRATALEIAESDHSLLRFYLPPEARWTVI 176 >gi|332662498|ref|YP_004445286.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332331312|gb|AEE48413.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 102 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I + + ++ + S LA+++G+ S KRF G+ S + +L Sbjct: 21 QEIAKRHKVLRKQAGFSQSELAKRSGVSLGSL---KRFETIGQISLESLLLLADVLNRL 76 >gi|302876490|ref|YP_003845123.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307687161|ref|ZP_07629607.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302579347|gb|ADL53359.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 69 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 1/49 (2%) Query: 4 FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 S + I + + N++ LAR G+ + + + + Sbjct: 1 MSEELILKNRLKVARAEKNISQGELARMVGVSRQTISSIETGHFNPTAK 49 >gi|259418447|ref|ZP_05742365.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259345842|gb|EEW57686.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 133 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 19/48 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + + E +T LAR+ G+ T+ ++ E R S S Sbjct: 17 GDRVAAARESAGMTQGQLARRMGVKKTTLIGWEQDLSEPRANKLSMLS 64 >gi|258653368|ref|YP_003202524.1| IstB domain-containing protein ATP-binding protein [Nakamurella multipartita DSM 44233] gi|258556593|gb|ACV79535.1| IstB domain protein ATP-binding protein [Nakamurella multipartita DSM 44233] Length = 721 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 21/149 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI---- 58 + ++ +A R + S +AR G D + R P+ + Sbjct: 1 MLTQEEDVDA--HALRRRGWSISAIARHLGKDRKTIRAYLNGERTAGVRSPAGPDVFEPF 58 Query: 59 -----FKILAATNETIC----------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 +++ + P + + + P G Sbjct: 59 VTYCRERLVEDPHLWATALYDELLQLGYDRSYPRLTHNLRTRGLRPVCHACRPAGGRPAA 118 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 +W+ + +P+ +G A Sbjct: 119 VIDHPPAEETQWDWLELPDPPRSWDGYGA 147 >gi|225378210|ref|ZP_03755431.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans DSM 16841] gi|225209941|gb|EEG92295.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans DSM 16841] Length = 201 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KI + I +R T L+ K + + +K +R +P + + Sbjct: 1 MDQIKIGKFIADERKRKGYTQKQLSEKLAISDKTISKWERGNG-----FPEVSLLLPLCN 55 Query: 64 ATNETICQ 71 T+ + Sbjct: 56 ELEITVNE 63 >gi|167749809|ref|ZP_02421936.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702] gi|167657292|gb|EDS01422.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702] Length = 301 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 10/158 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ N+T LA + + +K + +P T+ + + T Sbjct: 3 LGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTA-----FPETDKLITLSDYFGCT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ + T + + + F + G T+ + Sbjct: 58 LDELIKGSAEENFTEDAAGYDKEMNSFTSAICLGTAIVL-----AGVTTLLFTVVLGLDE 112 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 I A ++ R + + N I+ Sbjct: 113 TIAAAIFMLFVTVGTAIFIVSGIRHDNYVKENPNIKPF 150 >gi|146318886|ref|YP_001198598.1| Cro/CI family transcriptional regulator [Streptococcus suis 05ZYH33] gi|145689692|gb|ABP90198.1| transcriptional regulator, Cro/CI family [Streptococcus suis 05ZYH33] Length = 69 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 15/40 (37%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + + R L + LA+ A + + + +R Sbjct: 3 LKNRLKELRARDGLNQTELAKLAEVSRQTISLIERGEYTP 42 >gi|49078644|gb|AAT49805.1| PA1359 [synthetic construct] Length = 219 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 16/180 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R+ + L+ LAR A + + + S ++ +I AA Sbjct: 43 EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 97 Query: 67 ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 L+ P +D E LL P+ + G V Sbjct: 98 VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 155 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRT 177 P+ + I+ + + VN GD ++ R Sbjct: 156 KPDAAGWREIVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDGDEVVRFTRN 215 >gi|75759574|ref|ZP_00739662.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492952|gb|EAO56080.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 75 Score = 43.6 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M + + I + + R N + S LA K G+ + ++ Sbjct: 1 MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTVAAIEKG 41 >gi|328464227|gb|EGF35672.1| transcriptional regulator xre family protein [Lactobacillus rhamnosus MTCC 5462] Length = 236 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I ++ +T LA G+ S +K + +P + + A + Sbjct: 4 NVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQS-----YPDITLLPILAAYFDV 58 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 +I QL+ + ++ Sbjct: 59 SIDQLMAYDAQLQPSEIRRIY 79 >gi|326772583|ref|ZP_08231867.1| DNA-binding protein [Actinomyces viscosus C505] gi|326637215|gb|EGE38117.1| DNA-binding protein [Actinomyces viscosus C505] Length = 103 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTESIFKILAATN 66 ++ + R L+ LA AG+ ++ K ++ G P ++ + A + Sbjct: 32 QLGLRLQRARIAKGLSQEALAHAAGISSYTYQKFEKGESRPGTPMNPRLRTLIALATALD 91 Query: 67 ETICQ 71 + + Sbjct: 92 MQVEE 96 >gi|325567650|ref|ZP_08144317.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325159083|gb|EGC71229.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 172 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 14/141 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + E L+ + +A K + S +K + +P E++ + + Sbjct: 3 LAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRG-----YPDIENLILLSDLYQVS 57 Query: 69 ICQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 I + L + ++ + K++++ LL + + G + P Sbjct: 58 IDELLRENEALKERIETNNQEINDKKEKLSLLQRTMATEKDESLLLLLLAGIG--SFLFP 115 Query: 122 EIRSPHNGIYAIQTQDTRHKT 142 + + Sbjct: 116 LGLILDGFVLWRNKKANNFYV 136 >gi|313897568|ref|ZP_07831110.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957520|gb|EFR39146.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 302 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 5/85 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + ++ LA + + + +K + +P TE + I + T+ Sbjct: 4 GEKLQKLRKEKGMSQEELAARLHVSRQAVSKWENDQG-----YPETEKMLMIGNIFSVTM 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLY 94 LL D + + Sbjct: 59 DYLLKDEGGDQPQEQGFYASRECVQ 83 >gi|253565785|ref|ZP_04843240.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251946064|gb|EES86471.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 100 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I+ ++ +T + LAR+ G + + ++ + + R T ++++I+ A I Sbjct: 40 GKIIEDARKKAKVTQAELARRIGSNRSYISRVESGQTDLR-----TSTLYRIMNALGCQI 94 Query: 70 CQLL 73 + Sbjct: 95 EFNM 98 >gi|229550962|ref|ZP_04439687.1| XRE family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258538327|ref|YP_003172826.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229315677|gb|EEN81650.1| XRE family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257150003|emb|CAR88975.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 373 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I ++ +T LA G+ S +K + +P + + A + Sbjct: 4 NVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQS-----YPDITLLPILAAYFDV 58 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 +I QL+ + ++ Sbjct: 59 SIDQLMAYDAQLQPSEIRRIY 79 >gi|227494440|ref|ZP_03924756.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] gi|226832174|gb|EEH64557.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] Length = 354 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 10/109 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + LT LA G+ + +K + +P + + I T+ Sbjct: 29 ENLQHLRSTRGLTQERLAVLLGVSRQAISKWESDRA-----YPEMDKLLTICDLFGCTLD 83 Query: 71 Q-----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + L + P+ + + + G Sbjct: 84 ELVTGDLRTTDADTLEDPLVSQAVSPVQDYTGYDAHMRGFAWKIAAGMG 132 >gi|255281979|ref|ZP_05346534.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255267652|gb|EET60857.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 215 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + +R LT LA AG+ + + ++ E + K+ + Sbjct: 151 NLKLLRKRAGLTQRELAEYAGIPLRTIQQYEQRQKNINRAQ--AEYLVKLAKVLCCS 205 >gi|171056856|ref|YP_001789205.1| XRE family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774301|gb|ACB32440.1| transcriptional regulator, XRE family [Leptothrix cholodnii SP-6] Length = 200 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 5/100 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + AI +RH LT + ++ +A + +K + +++ +I A Sbjct: 13 EESVGAAIKEQRQRHGLTIAQVSEQASISRGMLSKIENGQTSA-----GMDTLARIARAL 67 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 ++ L + + +K + + G Sbjct: 68 GVSMSMLFSKYDVTASSAQHIKKGMGMEVVRRGTKNGHTY 107 >gi|89101267|ref|ZP_01174087.1| hypothetical protein B14911_01154 [Bacillus sp. NRRL B-14911] gi|89084017|gb|EAR63198.1| hypothetical protein B14911_01154 [Bacillus sp. NRRL B-14911] Length = 110 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + + + +T LA G+D T +K + +E P+ + I KI N+ + Sbjct: 8 LKDLRKEYRITQRKLADLIGIDFTYISKIENGSMEP----PAEDKIIKIADVFNKDANE 62 >gi|332665384|ref|YP_004448172.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332334198|gb|AEE51299.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 495 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 9/143 (6%) Query: 2 TSFSHKKIWEAID--RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 T +++I + ++ +R +L+ + L+ KAG+ + N+ ++ ++P E I Sbjct: 3 TKAQNERILFGLKVKQLRQRLSLSFADLSEKAGMSVSYLNEIEKG-----KKYPKGEKIQ 57 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNT 117 + A N + L +G + L P G G Sbjct: 58 TLARALNVSATDLASQDVDEGLAPVHDLLQSNFLNELPLERFGIDLAKVVEIIAGAPSRV 117 Query: 118 VGVPEIRSPHNGIYAIQTQDTRH 140 + YA++ + Sbjct: 118 GAFISTLLELSRNYALRQEHFYF 140 >gi|304436882|ref|ZP_07396846.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370081|gb|EFM23742.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 229 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 2/85 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++R+ + +T + LA + T+ + + R + + + Sbjct: 92 DNLNRLLQERGITQAELAAYMEVSNTTISNWVKGYKV--PRMDKVDKLCSFFKIKRSELL 149 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 + T K E+EI L Sbjct: 150 EQPPASGDLPDLTPKDEREIMHLMD 174 >gi|296157333|ref|ZP_06840169.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295892669|gb|EFG72451.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 229 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 6/150 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 32 VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L ++G E+ L+ S PT +++ + + + + Sbjct: 87 VAAFLRRHATNGFEHLPAERSSRLVSSNGRYSARPLYPDAEPTAAEFHELRIAPLHTEAG 146 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 A + ++ L+ Sbjct: 147 TRRA-PGTTVNLVVSEGTLEVSVHDQRQLL 175 >gi|291525583|emb|CBK91170.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528262|emb|CBK93848.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 167 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 46/162 (28%), Gaps = 15/162 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + ++T L++++G+ ++ K + R P + + KI A + Sbjct: 7 IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGE-----RNPKPDQLQKIAEALGIS 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + LD + ++ + D P+ I Sbjct: 62 VTVFLDYDINTVSDVLSLVMKLNEQSSLKISADKDKDGNYIPS----------SIHMTFE 111 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + + + L Y D ++ + Sbjct: 112 DSQINEAICSYLNCKQQMDLISYEDNDKAVIEQQKEFYDDKI 153 >gi|259047950|ref|ZP_05738351.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] gi|259035370|gb|EEW36625.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] Length = 166 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 5/102 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I + + + LA + + S +K + P E I ++ Sbjct: 3 KLAEKIYNLRKEKGWSQETLAEQIKVSRQSISKWESGQAV-----PEIEKIIELSTIFQV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T LL + + ++ Y+ S G + Sbjct: 58 TTDYLLLDENTTKSQKIELTEDEKDRYYKEVKSFGRWQVIYI 99 >gi|251782834|ref|YP_002997137.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391464|dbj|BAH81923.1| transcriptional regulator, Cro/CI family [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127639|gb|ADX24936.1| Transcriptional regulator, Cro/CI family protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 71 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R + + +A+ AG+ + + +R PS KI E Sbjct: 5 LKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSIVIAMKIAKVFQEP 59 Query: 69 ICQLLDLPF 77 + + L Sbjct: 60 VEDVFRLVE 68 >gi|238793272|ref|ZP_04636899.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] gi|238727440|gb|EEQ18967.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] Length = 193 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I R E+ LT + LA++AG+ ++ ++ + PS E+++ + Sbjct: 21 ASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGN-----PSLETLWSLA 67 >gi|229521883|ref|ZP_04411300.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] gi|229340808|gb|EEO05813.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] Length = 181 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 42/155 (27%), Gaps = 16/155 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + ++ + L+ A+ G+ + +R P+ +++KI + Sbjct: 9 QIANQLKKLRKSRGLSLDATAQLTGVSKAMLGQIERGES-----SPTIATLWKIASGFEA 63 Query: 68 TI-----CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + L + K L + F+ + + P Sbjct: 64 SFSAFFANDPQLLSSERSFPDDPNMKVHTLFPYAADTGLEIFEITLLDHHQ---QMSSPH 120 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 IY ++ K + + + Sbjct: 121 ALGVIEYIYVLEG---VMKVFFDEQWHELQPREHI 152 >gi|253701275|ref|YP_003022464.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251776125|gb|ACT18706.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 65 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ ++ E ++ + LAR AG+ P + ++ +R E+ KIL A + Sbjct: 2 IMNSVKKLREERLMSKAELARLAGVSPITIDRIERGE------DCRMETKRKILLALGFS 55 Query: 69 ICQ 71 + Sbjct: 56 LSD 58 >gi|167761576|ref|ZP_02433703.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] gi|167660719|gb|EDS04849.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] Length = 476 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + N + +A G+ + +K ++ PSTE+I ++ + Sbjct: 8 LGKNIASRRKSQNFSQEDIATLVGVSRQAVSKWEKDLS-----SPSTENIIRLAEILRVS 62 Query: 69 ICQ 71 + + Sbjct: 63 VEE 65 >gi|163737611|ref|ZP_02145028.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|161389137|gb|EDQ13489.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 81 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 T+ + ++I EA+ R + T S ++ + L + + + + Sbjct: 4 TARTAEQIGEALRRTRKARGWTQSDISARTNLRVATISSLENGDAGAK 51 >gi|160944849|ref|ZP_02092076.1| hypothetical protein FAEPRAM212_02365 [Faecalibacterium prausnitzii M21/2] gi|158444033|gb|EDP21037.1| hypothetical protein FAEPRAM212_02365 [Faecalibacterium prausnitzii M21/2] Length = 110 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I IDR + LA +GL ++ + +R ++ P+ SI KI Sbjct: 9 DILGRIDRERLARGWSEYTLAENSGLTQSTLSTWRRRNLQ-----PNVTSIEKICHGLGI 63 Query: 68 TICQLLDLPFSDGR 81 T+ Q + + Sbjct: 64 TLSQFFEEDAAVHH 77 >gi|114763961|ref|ZP_01443202.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114543553|gb|EAU46567.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 131 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I E + LAR+ G+ + + + E R + + +L Sbjct: 16 GDRIAAAREAAGMGQEKLARRLGVKLKTLHGWENDLAE--PRANKLQMLAGLLN 67 >gi|255973582|ref|ZP_05424168.1| CylR2 [Enterococcus faecalis T2] gi|256959429|ref|ZP_05563600.1| CylR2 [Enterococcus faecalis DS5] gi|256960245|ref|ZP_05564416.1| CylR2 [Enterococcus faecalis Merz96] gi|257080295|ref|ZP_05574656.1| CylR2 [Enterococcus faecalis JH1] gi|257423074|ref|ZP_05600064.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|307277414|ref|ZP_07558507.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307285036|ref|ZP_07565186.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307292300|ref|ZP_07572161.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312904701|ref|ZP_07763852.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|55670390|pdb|1UTX|A Chain A, Regulation Of Cytolysin Expression By Enterococcus Faecalis: Role Of Cylr2 gi|55670391|pdb|1UTX|B Chain B, Regulation Of Cytolysin Expression By Enterococcus Faecalis: Role Of Cylr2 gi|146386808|pdb|2GZU|A Chain A, High-Resolution Structure Determination Of The Cylr2 Homodimer Using Intermonomer Distances From Paramagnetic Relaxation Enhancement And Nmr Dipolar Couplings gi|146386809|pdb|2GZU|B Chain B, High-Resolution Structure Determination Of The Cylr2 Homodimer Using Intermonomer Distances From Paramagnetic Relaxation Enhancement And Nmr Dipolar Couplings gi|322812210|pdb|2XI8|A Chain A, High Resolution Structure Of Native Cylr2 gi|322812211|pdb|2XI8|B Chain B, High Resolution Structure Of Native Cylr2 gi|18139790|gb|AAL60140.1|AF394225_2 CylR2 [Enterococcus faecalis] gi|18104290|gb|AAL59476.1| putative transcription regulator [Enterococcus faecalis] gi|255966454|gb|EET97076.1| CylR2 [Enterococcus faecalis T2] gi|256949925|gb|EEU66557.1| CylR2 [Enterococcus faecalis DS5] gi|256950741|gb|EEU67373.1| CylR2 [Enterococcus faecalis Merz96] gi|256988325|gb|EEU75627.1| CylR2 [Enterococcus faecalis JH1] gi|257164898|gb|EEU94858.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|306496655|gb|EFM66211.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306502937|gb|EFM72197.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306505903|gb|EFM75080.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|310631956|gb|EFQ15239.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315163478|gb|EFU07495.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|329569606|gb|EGG51374.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 66 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + E+ ++ S LA + + N ++ PS + KI N Sbjct: 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYN-----PSLQLALKIAYYLNTP 56 Query: 69 ICQLLDLP 76 + + Sbjct: 57 LEDIFQWQ 64 >gi|323492256|ref|ZP_08097414.1| putative helix-turn-helix regulatory protein [Vibrio brasiliensis LMG 20546] gi|323313569|gb|EGA66675.1| putative helix-turn-helix regulatory protein [Vibrio brasiliensis LMG 20546] Length = 185 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +I + R +R L+ S +A++A + ++ ++ + PS E+++ Sbjct: 3 MKKPPIAQIAATLSRERQRSGLSLSEVAKRAQIAKSTLSQLENGAGN-----PSIETLWS 57 Query: 61 ILAATNETI 69 I + Sbjct: 58 ICVVLDIPF 66 >gi|317494163|ref|ZP_07952579.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917936|gb|EFV39279.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 154 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + ++ A + G + ++ +R G S ++I Sbjct: 1 MKKTLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55 Query: 61 ILAATNETIC 70 + A N Sbjct: 56 LAGALNVEPW 65 >gi|308175926|ref|YP_003915332.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743389|emb|CBT74361.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 65 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + H + LA G+ + ++ + PS FK+ A I Sbjct: 3 NNLSEYRKEHGFSQQALADLLGVSRQTIISLEKGRYD-----PSLPLAFKLSAVFGCKIE 57 Query: 71 QLLDLPF 77 L Sbjct: 58 DLFIPGE 64 >gi|291556308|emb|CBL33425.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 301 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 10/158 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ N+T LA + + +K + +P T+ + + T Sbjct: 3 LGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTA-----FPETDKLITLSDYFGCT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ + T + + + F + G T+ + Sbjct: 58 LDELIKGSAEENFTEDAAGYDKEMNSFTSAICLGTATVL-----AGVTTLLFTVVLGLDE 112 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 I A ++ R + + N I+ Sbjct: 113 TIAAAIFMLFVTVGTAIFIVSGIRHDNYVKENPNIKPF 150 >gi|260174585|ref|ZP_05760997.1| hypothetical protein BacD2_22192 [Bacteroides sp. D2] gi|315922848|ref|ZP_07919088.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696723|gb|EFS33558.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 152 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 6/76 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +AID E+ L+ S R+ G+ N+ R + K+ N Sbjct: 10 IGKAIDEQREKLKLSKSEFGRRIGVPQQHVNRILERDTMETKR------LVKVCQELNFN 63 Query: 69 ICQLLDLPFSDGRTTE 84 L + + Sbjct: 64 FFSLFCPLHTQQISAY 79 >gi|297562433|ref|YP_003681407.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846881|gb|ADH68901.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 287 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 1/83 (1%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + +++ + R+ E H T A+++G+ + K + R R +++ + Sbjct: 7 PTIRRRRLGFELRRLREEHGFTLDDAAKRSGVPRATIGKIETAESR-RTRARDLDALADL 65 Query: 62 LAATNETICQLLDLPFSDGRTTE 84 E L L Sbjct: 66 YNLDEEGRAGLHQLSRESKEKGW 88 >gi|284991477|ref|YP_003410031.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064722|gb|ADB75660.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 195 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 9/83 (10%), Positives = 30/83 (36%), Gaps = 5/83 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R T + L+ + G+ ++ ++ + R P+ E + + + Sbjct: 14 VGPRLRALRVRRGRTLAQLSEETGISVSTLSRLESGQ-----RRPTLELLLPLARSHRVP 68 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91 + +L+ P + + Sbjct: 69 LDELVGAPETGDPRVHPRPVVHH 91 >gi|222034354|emb|CAP77095.1| Phage repressor protein cI [Escherichia coli LF82] Length = 210 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 28/214 (13%) Query: 11 EAIDRMAERHNLT-PSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68 AI+R+ E + T L+ + ++ N+ R + I + T + Sbjct: 14 AAIERLLEAYGFTTKQALSEHLNVSKSTMANRVLRD-------SFPADWIIQCALETGVS 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRS 125 + L S + EK + P G N ++ EI Sbjct: 67 LLWLATGQGSMKG-GAEPEKSSHNENKQAIKPLSKLITPAIPKGTLENGQLSID-EEIFL 124 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + A + +T +++ +I+ + G I+ + Sbjct: 125 DHSILPADYEESMFLETPTDCY----------LIDKSIKQVSNGF-WLINIDGMIIVAKI 173 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G I + N D+E I R + Sbjct: 174 MRIPGNKIVV---NQDEASFECSTDDVEVIGRAV 204 >gi|226324192|ref|ZP_03799710.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] gi|225207741|gb|EEG90095.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] Length = 169 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 15/38 (39%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 E I R+ + L+ LA K + + +K + Sbjct: 4 ENIKRIRKSKGLSQEELAIKLNVVRQTVSKWENGLSVP 41 >gi|229815060|ref|ZP_04445397.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] gi|229809290|gb|EEP45055.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] Length = 155 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/105 (9%), Positives = 27/105 (25%), Gaps = 4/105 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +A+ + LT LA + + + ++ + E I + L Sbjct: 4 LKDALAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKL--IARELDVPVTR 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + + + F + G Sbjct: 62 LLDMPEHYCQSCGMMFTEPGQRGHE--ADGTETDEFCRWCYDKGA 104 >gi|160887303|ref|ZP_02068306.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483] gi|237713191|ref|ZP_04543672.1| transcriptional regulator [Bacteroides sp. D1] gi|262409416|ref|ZP_06085958.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294647377|ref|ZP_06724970.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294809001|ref|ZP_06767723.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|156107714|gb|EDO09459.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483] gi|229446849|gb|EEO52640.1| transcriptional regulator [Bacteroides sp. D1] gi|262352628|gb|EEZ01726.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292637336|gb|EFF55761.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294443726|gb|EFG12471.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|295087084|emb|CBK68607.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 132 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 9/114 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H + + I+R+ +T + L + G+ + +K ++ E + KI +A Sbjct: 11 HLHLGKKIERVRRLRGMTQTELGQLLGITKQAVSKMEQTEK------IDDERLEKIASAL 64 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 T L + E + + F FP Sbjct: 65 GVTTDGLKEYNEETVLYNTNNFYENCGVKNAIGNNQTF---NNFPIEQTIELFE 115 >gi|15613851|ref|NP_242154.1| transcriptional repressor of PBSX genes [Bacillus halodurans C-125] gi|10173904|dbj|BAB05007.1| transcriptional repressor of PBSX genes [Bacillus halodurans C-125] Length = 112 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + L+ LA+ GL+ ++ + + + P E++ K+ Sbjct: 4 GKRLRSLRINKKLSQEELAKTLGLNRSTLARYELENTQ-----PDYETLTKMADFFQ 55 >gi|331268175|ref|YP_004385884.1| putative prophage repressor [Clostridium botulinum BKT015925] gi|329127725|gb|AEB77665.1| putative prophage repressor [Clostridium botulinum BKT015925] Length = 108 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + + L S A+ GL + ++ R + I +I + Sbjct: 3 ERIKELRKLKGLNQSTFAKSLGLSQNHISSIEKGVRGLTTRTIN--DICRIYNVSPNW 58 >gi|291526790|emb|CBK92376.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 109 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I + + NLT LA + G+ ++ K + R S ++FKI+ Sbjct: 7 QVGIVIKSLRIQRNLTKEALAAELGISVSTIKKYENGE-----RALSITNLFKIIDYFKV 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +L++ + E+ F + Sbjct: 62 DANTILNVAEGKKENSIDSRLELMDYSRKAYFQKIFNEMLDNAE 105 >gi|282862576|ref|ZP_06271637.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282562262|gb|EFB67803.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 477 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + R+ H + +AR G+ + N+ ++ R + + +I Sbjct: 13 YAKLRRLRREHGMNQVDMARALGISTSYANQIEQ-----SRRPLTASVLLRIAEVFG 64 >gi|242240962|ref|YP_002989143.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242133019|gb|ACS87321.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 189 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 39/136 (28%), Gaps = 7/136 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE------SIFKI 61 ++ E + + + LA + + + ++ +R ++ ++ Sbjct: 11 RLSERLSALRRERGWSLDELALNSDISRATLSRMERGETSPTAALLGRLCVVYGCTMSRL 70 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 LA Q L+ + + P +G G P + P Sbjct: 71 LAEVETPSPQKLEPGQQTVWVDPETGFVRRSVSPPVNGFNAEMILGQLPASARIEYNA-P 129 Query: 122 EIRSPHNGIYAIQTQD 137 I + +Y + + Sbjct: 130 PIYGLEHHLYVLDGRL 145 >gi|257053776|ref|YP_003131609.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256692539|gb|ACV12876.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 299 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 14/160 (8%), Positives = 41/160 (25%), Gaps = 1/160 (0%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + LT +A + G+ ++ +K ++ R E + ++ + + Sbjct: 20 LAERLRDRGLTQLEVADQLGISQSAVSKYAHGEVDRNERLLEDERLQELTDRLADGLAAG 79 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 P E +++ F G +R + Sbjct: 80 DVSPVQALAEAEVFVRQLEQGDLLAQLHEESFSPLAEHAGTLAIHDPESRVRQSEQVRSS 139 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 ++ + + L ++ D ++ Sbjct: 140 VRRGLGMLE-NASGFARLIPAVGSNLVECVPDAEGIDDVV 178 >gi|218559582|ref|YP_002392495.1| phage regulatory protein cI [Escherichia coli S88] gi|218366351|emb|CAR04102.1| phage regulatory protein cI [Escherichia coli S88] Length = 210 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 28/214 (13%) Query: 11 EAIDRMAERHNLT-PSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68 AI+R+ E + T L+ + ++ N+ R + I + T + Sbjct: 14 AAIERLLEAYGFTTKQALSEHLNVSKSTMANRVLRD-------SFPADWIIQCALETGVS 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRS 125 + L S + + EK + P G N ++ EI Sbjct: 67 LLWLATGQGSM-KEGYESEKRSHNENKQAIKPLSKLITPSIPKGTLENGQLSID-EEIFL 124 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 H+ + A + +T +++ +++ + G I+ + Sbjct: 125 DHSILPADYEESMFLETPTDCY----------LIDKSVKQVSNGF-WLINIDGMIIIAKI 173 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 + G I + N D+E I R + Sbjct: 174 MRIPGNKIVV---NQDEASFECSADDVEVIGRAV 204 >gi|209524323|ref|ZP_03272872.1| transcriptional regulator, XRE family [Arthrospira maxima CS-328] gi|209495114|gb|EDZ95420.1| transcriptional regulator, XRE family [Arthrospira maxima CS-328] Length = 151 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 29/105 (27%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + + LA G+D T +K + + + + + L E + L Sbjct: 47 IRQARKDRGYSQRELAGLLGVDFTYLSKLENDRADYAPKEEVIRGLARNLGIDEEELIFL 106 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 K+ F F VF + + Sbjct: 107 AGRIPHHYENFLKQNNREITALFRRLQENPNFAKQVFDAASGKDQ 151 >gi|205375249|ref|ZP_03228039.1| putative DNA-binding protein [Bacillus coahuilensis m4-4] Length = 212 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 64/196 (32%), Gaps = 17/196 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + +++ LA K+G+ ++ + G + S + + I + Sbjct: 4 GEYLKQLRKEKSISQRELAEKSGVSNAEISRIETGGRQK----ISPDVLRAIAPILEISY 59 Query: 70 CQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L+D S+ R E++ EI G G + G+ G Sbjct: 60 EELMDKAGYISSNANFMSEHREAEERFIEIVTPKLIMDGWGVEYTRRGPTIGDIVAKKGK 119 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + + D + + L+R L + ++ + + +I Sbjct: 120 KEWHIDYRYFRIREDNDRHFRYDMRARETLWRTYGRLAVYDKDDISKYTIAVSDEKIYEI 179 Query: 181 VAKVLISRRGRSIDLM 196 V K + + L Sbjct: 180 VLKY----PPKLLRLK 191 >gi|156974240|ref|YP_001445147.1| hypothetical protein VIBHAR_01955 [Vibrio harveyi ATCC BAA-1116] gi|156525834|gb|ABU70920.1| hypothetical protein VIBHAR_01955 [Vibrio harveyi ATCC BAA-1116] Length = 88 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 13/38 (34%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + + +T LA K G+ ++ N + Sbjct: 1 MSNLKAIRGELGVTQQTLAEKVGVSQSAINHYENGNRT 38 >gi|325848843|ref|ZP_08170353.1| nucleotide sugar dehydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480487|gb|EGC83549.1| nucleotide sugar dehydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 489 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 17/181 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S KK+ + + + N + L+ G++ T ++ + PS + + Sbjct: 1 MKKLSVKKLADFVSTYRKSKNFSQRNLSDLTGINRTMISRIESCNYV-----PSIDQLQV 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + I L ++ K + + +G G + + N+ V + Sbjct: 56 LAEVLGFDIVDLF--VEEGKKSFMKNIDKKYKIAVAGTGYVGLSIATLLAQNNQVTAVDI 113 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD---ILILNSAIQVNCGDRLLIKPRT 177 + + D + QD + + D L+ D ++I T Sbjct: 114 VKEKVDLI-------NDRKSPIQDDYIEKYLSEKDLDLTATLDGEAAYRDADFVVIAAPT 166 Query: 178 G 178 Sbjct: 167 N 167 >gi|313894180|ref|ZP_07827745.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441004|gb|EFR59431.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] Length = 90 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + I ++T L+ G+ + +K + PS +++ KI A Sbjct: 29 QIIQNIVEARLAAHMTQMQLSELTGITQSDISKIENGNGN-----PSLKTLQKIAHAFG 82 >gi|310659792|ref|YP_003937513.1| hypothetical protein CLOST_2493 [Clostridium sticklandii DSM 519] gi|308826570|emb|CBH22608.1| protein of unknown function [Clostridium sticklandii] Length = 234 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 34/103 (33%), Gaps = 6/103 (5%) Query: 10 WEAIDRMAE-RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + R+ +T LA K G+ + +K + + +P + + +I + + Sbjct: 4 GQNIQFLRKMRNKMTQEELAEKLGVSRQTVSKWELDVM-----YPEMDKVIEICKLFSCS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + +L+ + + + F Sbjct: 59 MDELIRNDMNVSDEAYSDIRMEYVEPFRYIRYAVVSTEPEDDA 101 >gi|297153608|gb|ADI03320.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 172 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 6/163 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + E +L+ S LAR++ + + ++ + G R P+ E+++ + A N Sbjct: 6 RVGLRLRELREAQDLSLSELARRSAIGKGTLSELE-----GGRRNPTLETLYALTTALNV 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L + + + F + + G + + H Sbjct: 61 PLSTALHGLALPAEISGRAVDAVLTERFEDASAVTETYRIRIRAGTTQESAAHSPGTTEH 120 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + A + S+ P + Q GD Sbjct: 121 IVVLAGTARVGSLSAP-VSIGPGMHGSWAADVPHLYQAPFGDV 162 >gi|298292838|ref|YP_003694777.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929349|gb|ADH90158.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 91 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + + R+ + LT LA ++G + +R + P+ ++++ Sbjct: 1 MDM--RKLVGRNLARLRQAQKLTQEELAMRSGFSQQYLSDMERG-----LKNPTIITLYE 53 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEI 90 I A + L++ + ++ Sbjct: 54 IALALRVSHVALVEPDGMADGAVAQPKRRR 83 >gi|295112170|emb|CBL28920.1| Helix-turn-helix. [Synergistetes bacterium SGP1] Length = 138 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 27/105 (25%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + R LT L ++ G+ P+ ++ +R G + E I +L + Sbjct: 4 ANLRRRRNHLGLTLKELGKECGMSPSYISELERGVYGGGEALETQERILAVLTDLDMKQR 63 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 R E + G W Sbjct: 64 ASTMWHSRPERKFEPGRAYLVEDQPLRYLRKEGKHHLFRGPGGGW 108 >gi|289773956|ref|ZP_06533334.1| transcriptional regulator [Streptomyces lividans TK24] gi|289704155|gb|EFD71584.1| transcriptional regulator [Streptomyces lividans TK24] Length = 200 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 11/146 (7%) Query: 1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M + + + + I + + LA +A L +S ++ + R + Sbjct: 1 MLLMTQEDGDLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENG-----RRRLA 55 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + A + T+ QL++ D T+ + L+ +P G G T Sbjct: 56 LDQLVTLARALDTTLDQLVETADEDVITSPMIDSAHGLMRWPVKGDPGMTVVRQRMTQPP 115 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140 + + Sbjct: 116 PENPARMRAHPGREWLVVLSGTAVLM 141 >gi|284047052|ref|YP_003397392.1| MerR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951273|gb|ADB54017.1| transcriptional regulator, MerR family [Conexibacter woesei DSM 14684] Length = 283 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 36/135 (26%), Gaps = 10/135 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I R LT A + G+ + + +R + +T+ + ++ A + Sbjct: 92 GDTIRRARRDRGLTLREAAARIGVSASFLSSVERGEV-----GVTTQFVARVADAFLMPM 146 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + E+ L G ++ V P + G Sbjct: 147 SGMASFRAQGPFVVRSDERASGTL-----VGGVVWEELVLPGHALEPALLTVPPARDSGG 201 Query: 130 IYAIQTQDTRHKTQD 144 YA + Sbjct: 202 AYARPGETFVFVLAG 216 >gi|239502014|ref|ZP_04661324.1| hypothetical protein AbauAB_06835 [Acinetobacter baumannii AB900] Length = 183 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 17/144 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + H + I + + +L+ LA +AG+ + + + S + I Sbjct: 6 SVLQH--VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 58 Query: 62 LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 A ++ P EK+E + L PS S + G Sbjct: 59 AAVLGVDFRTIVSAPELKEHALVNALAWQGEKEESKATFLASVPSRSQVELWTWSLAVG- 117 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137 + V + IY ++ + Sbjct: 118 -ESYVAEADAEGWQELIYVLEGEL 140 >gi|269798806|ref|YP_003312706.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269095435|gb|ACZ25426.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 90 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I + I ++T L+ G+ + +K + PS +++ KI A Sbjct: 29 QIIQNIVEARLAAHMTQMQLSELTGITQSDISKIENGNGN-----PSLKTLQKIAHAFG 82 >gi|183982165|ref|YP_001850456.1| transcriptional regulator [Mycobacterium marinum M] gi|183175491|gb|ACC40601.1| transcriptional regulator [Mycobacterium marinum M] Length = 180 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + LT LA++AGL + +K +R PS K+ A Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQST-----PSIAVALKVARAL 52 >gi|170693398|ref|ZP_02884557.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170141553|gb|EDT09722.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 229 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 6/150 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 32 VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L ++G E+ ++ S PT Sbjct: 87 VAAFLRRHATNGFEHLPAERSSRIVSSNGRYSARPLYPDNEPT-AAEFHELRIAPLHTEA 145 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 G+ + ++ L+ Sbjct: 146 GVRRAPGTTVNLVVSEGTLEVSVHDQRQLL 175 >gi|167571834|ref|ZP_02364708.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 200 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 7/142 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 22 RVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 76 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ +L P + +IP L + + +W + +P + Sbjct: 77 SLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGKFEWYELTLPANGAL 136 Query: 127 HNGIYAIQTQDTRHKTQDTSML 148 + + + S+ Sbjct: 137 VSNPHE-PGTREHLTVLNGSVE 157 >gi|118617359|ref|YP_905691.1| transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118569469|gb|ABL04220.1| transcriptional regulator [Mycobacterium ulcerans Agy99] Length = 180 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + LT LA++AGL + +K +R PS K+ A Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQST-----PSIAVALKVARAL 52 >gi|37528124|ref|NP_931469.1| hypothetical protein plu4293 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787561|emb|CAE16665.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + ++ A K G+D T + +R R P+ E I I + + Sbjct: 12 GQRVRYFRQSSGMSQEAFADKCGIDRTYISGIERGV-----RNPTLEIINIIASGLQIEL 66 Query: 70 CQLLDL 75 L D Sbjct: 67 TDLFDF 72 >gi|326332010|ref|ZP_08198295.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium Broad-1] gi|325950148|gb|EGD42203.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium Broad-1] Length = 147 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ LA +AG+ ++ +R R PS E + +I A + Sbjct: 13 LGEYLKEQRISAEMSLRQLADQAGVSNPYLSQIERG-----LRKPSAEVLQQIAKALRIS 67 Query: 69 ICQLLDLPFSDGRTTE 84 Q+ + Sbjct: 68 AEQVYVRAGILSPDSN 83 >gi|313207290|ref|YP_004046467.1| transcriptional regulator, xre family [Riemerella anatipestifer DSM 15868] gi|312446606|gb|ADQ82961.1| transcriptional regulator, XRE family [Riemerella anatipestifer DSM 15868] gi|315023460|gb|EFT36467.1| XRE family transcriptional regulator [Riemerella anatipestifer RA-YM] gi|325335235|gb|ADZ11509.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 101 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 18/46 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 ++ ++ + +T LA K G + + ++ + + R Sbjct: 38 QLGVLLEEARRKLGMTQEELAEKCGTNKSYISRIENNASDIRLSTL 83 >gi|269793710|ref|YP_003313165.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269095895|gb|ACZ20331.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 98 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 16/41 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 K+ A+ R+ +T + LA AG+ + G Sbjct: 30 KLGAAVRRLRSDRGMTQAQLAEAAGVSRQWVVAVESGSKHG 70 >gi|160892204|ref|ZP_02073207.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC 8492] gi|270296185|ref|ZP_06202385.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156858682|gb|EDO52113.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC 8492] gi|270273589|gb|EFA19451.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 161 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I + + ++ N+T LA G++ + K ++ S + + K+ +A Sbjct: 16 RERIGNRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYN-----VSIDILSKVTSAL 70 Query: 66 NE 67 Sbjct: 71 GF 72 >gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 112 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + LT L+ GL P+ + +R + PS E++ I + + + Sbjct: 13 LGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGE-----KSPSVETLIDISKSLDTS 67 Query: 69 ICQLLDLPFSDGRTTEKK 86 I +L++P + Sbjct: 68 ISYILNVPDYKMKKELSD 85 >gi|221068405|ref|ZP_03544510.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220713428|gb|EED68796.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 491 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 5/88 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + LT LA+ L P+ N+ ++ R + + +I I Q Sbjct: 9 RLRSLRAERGLTQVALAQALELSPSYLNQIEQDQ-----RPLTVSVLLRIHRVLGVDIQQ 63 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 + + + L Sbjct: 64 FSEDEEARLLAQLRDAVAAMPLPEAAVP 91 >gi|329728856|gb|EGG65277.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 62 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + NLT LA + L ++ + PS E+ I+ Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56 Query: 68 TICQLL 73 T + Sbjct: 57 TPSEFF 62 >gi|307329641|ref|ZP_07608799.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884699|gb|EFN15727.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 9/136 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + R LT A + GL P ++ + R PS + + T Sbjct: 31 VAPRLRDLRRRSGLTLEAAAHRVGLSPAHLSRLETG-----RRQPSLPMLLTLARTYGTT 85 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + LL S+ + ++ +G ++ +G + + VPE Sbjct: 86 VSDLLGEETSERDPVVRADRMEAQE----AGGWTYWQAGGSGRAMQALRLHVPERSGAQE 141 Query: 129 GIYAIQTQDTRHKTQD 144 G+ + + Sbjct: 142 GLVRVHPGEEWLYVLG 157 >gi|300690045|ref|YP_003751040.1| transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] gi|299077105|emb|CBJ49726.1| putative transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] Length = 209 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 5/97 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA + G+ + + +R P+ + K+ A Sbjct: 17 NERIARRVRELRAARGYTLDVLATRCGVSRSMISLIERGAA-----SPTAAVLDKLAAGL 71 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 ++ L + + P Sbjct: 72 GVSLASLFGGEREGVPAQPLMRRAQQAQWRDPESGYV 108 >gi|296141333|ref|YP_003648576.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029467|gb|ADG80237.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 128 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 5/92 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S + + E I ++ LA KAG+ ++ +R R PS + + +I A Sbjct: 12 SGEGLGEFIRAQRIAAEVSIRQLAEKAGVSNPYLSQIERG-----LRRPSADVLGQIAKA 66 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L E ++ + Sbjct: 67 LRLSAEVLYVQAGILEERPESPVRDALIADTA 98 >gi|262201398|ref|YP_003272606.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084745|gb|ACY20713.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 147 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 9/132 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT K+ + NL+ + +AR+AG+D + + ++ I P ES+ Sbjct: 1 MTPDQTVKLINLLTTKRNEQNLSVNEVARRAGVDTGTVWRIEQGMIAK----PRVESLIA 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I +L + ++ + +++ Sbjct: 57 IAKVLGIKPMELFTTVGWLTADDLPDIDTYLHTKYADLPKPVVENAQRY-----IDSLRT 111 Query: 121 PEIRSPHNGIYA 132 P + +A Sbjct: 112 PPAQHSRGCHHA 123 >gi|225175746|ref|ZP_03729739.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168670|gb|EEG77471.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1] Length = 406 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 HK I + R+ E L+ S +A AG+ ++ + + + Sbjct: 24 KMDHKMISINLRRVREEKGLSQSEVAHLAGISRVAYGRIESGASIPK 70 >gi|186972781|pdb|2R1J|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With The Synthetic Operator 9t gi|186972782|pdb|2R1J|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With The Synthetic Operator 9t Length = 68 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I ++ + + L + G+ + ++ +R E P+ E++ + A + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALSKALQCSP 61 Query: 70 CQ 71 Sbjct: 62 DY 63 >gi|168183950|ref|ZP_02618614.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672974|gb|EDT84935.1| transcriptional regulator [Clostridium botulinum Bf] Length = 92 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E LT L + + + + ++ E P+ +++ KI N + Sbjct: 3 GDRLRELREEKQLTQEELGKLLNVSRQAVSSYEKGENE-----PTIDALVKIANIFNVS 56 >gi|197124332|ref|YP_002136283.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196174181|gb|ACG75154.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 85 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 I ++ E LT LAR+ G+ ++ N + + Sbjct: 5 IKKIRELRGLTQEALARELGVTFSTVNGWENGKHKPMP 42 >gi|154247940|ref|YP_001418898.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162025|gb|ABS69241.1| putative transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 72 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 7/71 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + R+ + LT + ++G + +R R P+ ++++ Sbjct: 1 MDM--RKLVGRNFARLRQEKGLTQEDVEARSGFSQQYISGLERG-----RRNPTVITLYE 53 Query: 61 ILAATNETICQ 71 + A + + Sbjct: 54 LAQALGVSHEE 64 >gi|75758644|ref|ZP_00738762.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904095|ref|ZP_04068190.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] gi|228931022|ref|ZP_04093978.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|74493903|gb|EAO57001.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228828643|gb|EEM74323.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228855180|gb|EEM99744.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] Length = 91 Score = 43.6 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + L+ L++ +G+ + + + PS E++ K+ Sbjct: 28 EIVGVLMAERVKRGLSQRELSKLSGVAQKTISHIESGEDI-----PSIETVVKLAKHLGY 82 Query: 68 T 68 Sbjct: 83 E 83 >gi|317403434|gb|EFV83946.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 225 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 9/102 (8%), Positives = 33/102 (32%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ ++H + + +A+ G+ ++ +R S +++ ++ + Sbjct: 33 LGQQLRQLRKQHGRSLADVAQACGMSLGLLSQIERGLSSA-----SVKTLHQLAREFGVS 87 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + LL + + G P Sbjct: 88 VNTLLRNAEHTEGEDGGRVARAGTHRYIDLREKGIVKEMYTP 129 >gi|319653368|ref|ZP_08007468.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2] gi|317394852|gb|EFV75590.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2] Length = 113 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I I + + + + L+ KA + + + +R E PS + + +I Sbjct: 2 IGGRIKTLRIKKGYSINELSEKAEVSKSYLSYIERGIQE----NPSLQVLSRIAKTL 54 >gi|289432135|ref|YP_003462008.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|288945855|gb|ADC73552.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 133 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 4/101 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ E L+ +A K G+ + + + G+ + P E + K+ A N + Sbjct: 5 GEYLRKLREAQKLSLREMAAKTGVSVSYITQIEN----GKRKAPGPEVLKKLAPAYNVPV 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 +LL E K + + D Sbjct: 61 RELLKAAGYMDDVKEFKSILSDEEEVERAFNYVIGDPRYQS 101 >gi|227889182|ref|ZP_04006987.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] gi|227850411|gb|EEJ60497.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] Length = 161 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E I R+ + NLT +A+K + + ++ P E I I ++ Sbjct: 5 EQIKRLRKESNLTQEEMAKKLNVTRQAIFNWEKNRNP-----PDFEMIILIAKTFGVSLD 59 Query: 71 QLLDLPFSDGRTTEK 85 +L+ + + Sbjct: 60 ELILGDKKMNKIEQT 74 >gi|240144293|ref|ZP_04742894.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203709|gb|EEV01994.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 111 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 20/59 (33%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + L+ LA K + + K + E P+ + + + + + Sbjct: 1 MNRLKDLRLKMGLSQQALADKLNVSQQTICKYENNTNE-----PNIDMLEAMADIFDVS 54 >gi|166031013|ref|ZP_02233842.1| hypothetical protein DORFOR_00694 [Dorea formicigenerans ATCC 27755] gi|166029280|gb|EDR48037.1| hypothetical protein DORFOR_00694 [Dorea formicigenerans ATCC 27755] Length = 140 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 TS ++ ++ E + + ER NL +R + +++ +R R P E + I Sbjct: 4 TSMANIQLTENLRILRERSNLKQDEFSRYLNISRQTYSNYERGT-----RTPDLELLKSI 58 Query: 62 LAATNETICQ 71 + TI + Sbjct: 59 ADFYHITIDE 68 >gi|154504675|ref|ZP_02041413.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC 29149] gi|153795157|gb|EDN77577.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC 29149] Length = 130 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 16/45 (35%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 E I + + +T LA K GL + + +R S Sbjct: 3 ERIKELRKTIGITQQELADKLGLKRNTIATYEIGKAIPSDRVISD 47 >gi|85706378|ref|ZP_01037472.1| transcriptional regulator, XRE family protein [Roseovarius sp. 217] gi|85669151|gb|EAQ24018.1| transcriptional regulator, XRE family protein [Roseovarius sp. 217] Length = 468 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ T + +AR + P+ N + R S + + + A Sbjct: 6 IGPRLRQLRRDRGQTQADMARMLNVSPSYINLLENNQ-----RSLSVQMLMSLADAYAVD 60 Query: 69 ICQ 71 Sbjct: 61 WRD 63 >gi|119775849|ref|YP_928589.1| hypothetical protein Sama_2717 [Shewanella amazonensis SB2B] gi|119768349|gb|ABM00920.1| hypothetical protein Sama_2717 [Shewanella amazonensis SB2B] Length = 119 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 5 SHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +I + I + + + S LA +AG+ + +K ++ G R P+ + K+ Sbjct: 6 TQAQIISSKIKSLRAKLDWNQSRLATEAGISGAALSKIEQ----GDKRVPTIVVLRKLAT 61 Query: 64 ATNETICQ 71 A + + Sbjct: 62 ALKVDVHE 69 >gi|307324283|ref|ZP_07603491.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890014|gb|EFN20992.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 404 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 9/104 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKA----GLD-----PTSFNKSKRFGIEGRNRWPSTESIF 59 I I R+ E + + LAR+ G+ ++ + R P S Sbjct: 5 IGANIKRLREERGWSQARLAREVCRSTGVSGEPIGRQEVSRWETGKRTPREWLPFLASAL 64 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + A + + P +E + L G Sbjct: 65 GVTADVLKAPQEPTQPPLPTLADFLPEEDPLTPLQTRRGRQIGM 108 >gi|296161065|ref|ZP_06843876.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295888764|gb|EFG68571.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 108 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ E + + + LT LA AGL + + + + PS E + + A Sbjct: 4 RLGEKLRELRKERELTLEKLADLAGLSKSYLWELENRESQ----RPSAEKLTALADALG 58 >gi|268592540|ref|ZP_06126761.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311950|gb|EFE52403.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 186 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I +A+ R ++ L+ S L+RKAG+ ++ ++ + PS E+++ + A Sbjct: 9 ELISKALVRERQKSGLSLSELSRKAGIAKSTLSQLESGSGN-----PSIETLWALCVAL 62 >gi|323342509|ref|ZP_08082741.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463621|gb|EFY08815.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 258 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 5/90 (5%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 ++ LA K + S +K +R PS +++ ++ + L+ S Sbjct: 1 MSQEMLAEKLNISRQSISKWERGES-----LPSIDNLIRLSEILGIPLNDLVKGKESFPI 55 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + + + Sbjct: 56 PFRFGQNTTKIFFVVFVFLTALVCFVTYAI 85 >gi|290580743|ref|YP_003485135.1| hypothetical protein SmuNN2025_1217 [Streptococcus mutans NN2025] gi|254997642|dbj|BAH88243.1| hypothetical protein [Streptococcus mutans NN2025] Length = 79 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + +T LA K + + +K +R +P SI K+ ++ L Sbjct: 10 ISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLS-----FPDINSIPKLAEIFEVSVDDL 64 Query: 73 LD 74 + Sbjct: 65 MQ 66 >gi|167758542|ref|ZP_02430669.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC 35704] gi|167663738|gb|EDS07868.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC 35704] Length = 94 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ ++T S LA+K + +S N + PST + ++ + + Sbjct: 3 IADKIKQLRTSRDMTQSDLAKKLNITRSSVNAWEMGLST-----PSTAYLVELSQLFHVS 57 >gi|160933365|ref|ZP_02080753.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] gi|156867242|gb|EDO60614.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] Length = 194 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + E+ LT S LA K + + +K + +P + + A +I Sbjct: 7 GSTIKSLREKQRLTQSQLAEKLCVSDKTISKWETGRG-----FPDISLLKPLACALQVSI 61 Query: 70 CQ 71 + Sbjct: 62 PE 63 >gi|126643247|ref|YP_001086231.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|332874254|ref|ZP_08442174.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|126389131|gb|ABO13629.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|323519685|gb|ADX94066.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332737538|gb|EGJ68445.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 183 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 17/144 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + H + I + + +L+ LA +AG+ + + + S + I Sbjct: 6 SVLQH--VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 58 Query: 62 LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 A ++ P EK+E + L PS S + G Sbjct: 59 AAVLGVDFRTIVSAPELKEHALVNALAWQGEKEESKATFLASVPSRSQVELWTWSLAVG- 117 Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137 + V + IY ++ + Sbjct: 118 -ESYVAEADAEGWQELIYVLEGEL 140 >gi|118477277|ref|YP_894428.1| hypothetical protein BALH_1588 [Bacillus thuringiensis str. Al Hakam] gi|196045052|ref|ZP_03112285.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228933140|ref|ZP_04095997.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229184045|ref|ZP_04311258.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|118416502|gb|ABK84921.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|196024054|gb|EDX62728.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228599428|gb|EEK57035.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|228826497|gb|EEM72273.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 149 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 5/110 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ E + +A+K G+ + K + P +++ + N T Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----CPDIDNLILLSEMYNVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +L+ + E++ G F + + + Sbjct: 58 LDELIKGNQNIKEKIHINEEDEDFEKENEFGFYIGFGLLIMSAFIDYEGI 107 >gi|67921508|ref|ZP_00515026.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501] gi|67856620|gb|EAM51861.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501] Length = 229 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ E + + ++ +T + A+ + T+ ++ R + + K+ A Sbjct: 12 NQLGERLQQARKQCGMTQAEAAKIIKVARTTIVAIEKGE-----RRLKSSELIKLARAYG 66 Query: 67 ETICQL 72 + Sbjct: 67 RNVSDF 72 >gi|331006800|ref|ZP_08330064.1| hypothetical protein IMCC1989_737 [gamma proteobacterium IMCC1989] gi|330419391|gb|EGG93793.1| hypothetical protein IMCC1989_737 [gamma proteobacterium IMCC1989] Length = 136 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + R+ T LA GL S ++ +R G + P ++ K++ + Sbjct: 5 ENLRRLRHDKGFTQRELAVACGLRSASISEMERDGGD-----PKMSTVVKLMKGLECS 57 >gi|320526956|ref|ZP_08028145.1| cupin domain protein [Solobacterium moorei F0204] gi|320132541|gb|EFW25082.1| cupin domain protein [Solobacterium moorei F0204] Length = 180 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 43/159 (27%), Gaps = 13/159 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I ++ +++LT LA + L ++ +R PS +++ I A Sbjct: 3 DIGHRIKQLRIKNDLTLEELASRTELTKGFLSQLERNLT-----SPSIQTLADIAEALGV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------VP 121 + + E + ++ + Sbjct: 58 D-MSRFFAEEHEEKIVFTPEDVFIDEQDGVTTHWIVPNAQKNNMEPIILQLQPGARSKQI 116 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 E Y + + + + + R+GD + Sbjct: 117 EPHQGEEFGYVLSGRIYLVR-EGYKKGAVVRRGDTFYIR 154 >gi|299529773|ref|ZP_07043206.1| DNA polymerase V [Comamonas testosteroni S44] gi|298722187|gb|EFI63111.1| DNA polymerase V [Comamonas testosteroni S44] Length = 136 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + SM GDI++++ ++ ++ ++V +VL S G + Sbjct: 43 PKATFLLRVAGPSMQEHGIDDGDIVVVDRELRARDASIVVAVVER-ELVIRVLDSD-GDT 100 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 L + YP + I ++ Sbjct: 101 CKLKAGAPTYPDILPQEGQTLEIWGVV 127 >gi|296332860|ref|ZP_06875320.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673206|ref|YP_003864878.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150140|gb|EFG91029.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411450|gb|ADM36569.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 261 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKVNTTRQAISKWENGQG-----FPETEKLLMIGNIFEVS 57 >gi|261368381|ref|ZP_05981264.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569581|gb|EFB75116.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 103 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + ++ + + LA+ +GL+ ++ + R P+ E+I K T Sbjct: 2 DVLERLRKLLQERGWSEYRLAQVSGLNESTISNIYRRNT--LPTIPTLEAICKAFGITLS 59 Query: 68 TICQLLDLPFS 78 D+ Sbjct: 60 QFFAESDMVEM 70 >gi|256811308|ref|YP_003128677.1| XRE family transcriptional regulator [Methanocaldococcus fervens AG86] gi|256794508|gb|ACV25177.1| transcriptional regulator, XRE family [Methanocaldococcus fervens AG86] Length = 165 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + I E+ L+ LA+K + ++ K +R+ +E R Sbjct: 75 PML-REDYGDVIREAREKRGLSIEDLAKKLKMKASTLQKFERYELEPNEREIKI 127 >gi|251794968|ref|YP_003009699.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542594|gb|ACS99612.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 272 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +K+ +I + T LA K G+ + +K + P + ++ Sbjct: 3 EKLARSIAIYRKERGFTQEELATKLGISFQAVSKWENALT-----MPDLSLLPELCRTLE 57 Query: 67 ET 68 + Sbjct: 58 VS 59 >gi|227873975|ref|ZP_03992191.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840183|gb|EEJ50597.1| transcriptional regulator [Oribacterium sinus F0268] Length = 67 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 13/40 (32%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + +L+ LA G+ + N ++ R Sbjct: 5 RLKSARAGKDLSQQELADLVGVSRQTINAIEKGDYNPTIR 44 >gi|183980077|ref|YP_001848368.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183173403|gb|ACC38513.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 263 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 38/163 (23%), Gaps = 12/163 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E H+ + + LA G+ + +R R P ++ K+ Sbjct: 1 MSRESAGAAIRALRESHDWSLADLAAATGVSIMGLSYLERGA-----RKPHKGTVQKVEN 55 Query: 64 ATNETICQLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 L + E + E P G Sbjct: 56 GLGLPPGTYSRLLVAADPEAELARLLAARPTETASPRRPGVVVVDRHSDTDVLEGYAEAQ 115 Query: 118 VG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 + + + + + + + + Sbjct: 116 LDALRSVIDRLPASTSNEYETYILSVVAQCVKAEMLAASSWRV 158 >gi|167908369|ref|ZP_02495574.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] Length = 202 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 6/116 (5%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ E I R+ T L+R AG+ + ++ +R P+ +++ A Sbjct: 21 TPPRVGEQIQRLRNERKFTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +L P + +IP L + + G + + Sbjct: 76 LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130 >gi|153008229|ref|YP_001369444.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560117|gb|ABS13615.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 110 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + ++ LA AG+ ++ ++ EG S +++ KI A TI + Sbjct: 55 IKVWRDYRGMSAKALADAAGISAAYLSQIEKGLREG-----SLDAMKKIAEALKVTIDE 108 >gi|119470975|ref|ZP_01613559.1| component of DNA polymerase V [Alteromonadales bacterium TW-7] gi|119445997|gb|EAW27277.1| component of DNA polymerase V [Alteromonadales bacterium TW-7] Length = 144 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 S + +SM + +GD+L+++ A GD ++ G V Sbjct: 33 GVSLDELLIKHPDATFIGIASGSSMQEVGIFEGDLLVVDRAEHAKDGDVIV-ANLNGLFV 91 Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211 K+L L+S + Y + SD Sbjct: 92 CKLLDKTNA---RLLSASPLYQPVNITPSD 118 >gi|71903992|ref|YP_280795.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|94990913|ref|YP_599013.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|71803087|gb|AAX72440.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] gi|94544421|gb|ABF34469.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] Length = 128 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 5/86 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + LT LA+ + ++ +R P +SI K+ N + Sbjct: 20 EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKG-----SRNPKHKSIEKLANVFNVSTD 74 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFP 96 LL EK L Sbjct: 75 YLLGNTDLKNPNDLDIEKVKESLKKS 100 >gi|87121237|ref|ZP_01077127.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121] gi|86163394|gb|EAQ64669.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121] Length = 186 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + + +A+ R + ++ + +AR+AG+ ++ ++ + PS E+++ + Sbjct: 6 TLPIEIVAKALKRERRKLGVSMAEIARQAGIAKSTLSQLESGIGN-----PSLETLWAL 59 >gi|94309910|ref|YP_583120.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353762|gb|ABF07851.1| conserved hypothetical protein with lambda repressor-like DNA-binding domains [Cupriavidus metallidurans CH34] Length = 131 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/113 (8%), Positives = 30/113 (26%), Gaps = 8/113 (7%) Query: 1 MTSFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M + + + + ++ + L+ ++GL + + +R R + + Sbjct: 1 MHLMTGDPLKLFGRHLTWLRKQRGWSQEALSLESGLARSYLSGIERGT-----RNVALYN 55 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 I + +LD + + P+ Sbjct: 56 ICTLADTLGVAPSVMLDFSSHCADAPVEPARAPFNPEISPAVQATLRYMTELS 108 >gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314942330|ref|ZP_07849178.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951464|ref|ZP_07854514.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314993125|ref|ZP_07858511.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996008|ref|ZP_07861086.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313589762|gb|EFR68607.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313592365|gb|EFR71210.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596421|gb|EFR75266.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598947|gb|EFR77792.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642303|gb|EFS06883.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 95 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R + L+ + LA+K + + + + Sbjct: 29 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 68 >gi|295115097|emb|CBL35944.1| Predicted transcriptional regulators [butyrate-producing bacterium SM4/1] Length = 107 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S H+ + + E +LT LA G+ + ++ + + PS + Sbjct: 1 MKSPDHE-LGYRLKAARENRHLTQERLAEMVGIAASYLSEIEN-----KRTVPSFNVLSS 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86 + N ++ L+ SD + + Sbjct: 55 LCQTLNVSLDDLIFHTESDQIESITR 80 >gi|289522774|ref|ZP_06439628.1| toxin-antitoxin system, antitoxin component, Xre family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504610|gb|EFD25774.1| toxin-antitoxin system, antitoxin component, Xre family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 137 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I R+ ++ LT LA G+ + G S + + KI A + Sbjct: 31 IKRIRQQRGLTQGELASIVGVSSGYIQALESNRRNG-----SLKILKKIAEALAVDTSE 84 >gi|282851522|ref|ZP_06260887.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri 224-1] gi|282557490|gb|EFB63087.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri 224-1] Length = 114 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 10/111 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M++FS++ I + E +NL+ + +A+K GL + + R P E++ Sbjct: 1 MSAFSNRLI-----ALREENNLSKTAVAKKLGLSVQRYANWEYGT-----REPDLENLAA 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 I + L + + EK+ +L + + Sbjct: 51 IAKLYGVSTDYLTGQNDDRDKQSVDLEKDPVVLSYGGRPVSDADMDVIKAI 101 >gi|260428966|ref|ZP_05782943.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260419589|gb|EEX12842.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 205 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + H L+ L+ +A L S ++ +R PS ++ K+ + + Sbjct: 25 LGLRLRALRKSHGLSLKELSARASLSVGSLSQIERDLS-----SPSVRTLNKLATSFDVP 79 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + P +D ++ + Sbjct: 80 LSYFFADPAADEVDGIVIRRDTGHEMDVSAQG 111 >gi|237800519|ref|ZP_04588980.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023379|gb|EGI03436.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 115 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + L+ + LA K G D + +R P E + +I N Sbjct: 2 VGAKIKALRKSSTLSQADLAEKIGCDAPLIGRYERGIN-----LPGIEQLIRIATVFNVA 56 Query: 69 ICQ 71 + Sbjct: 57 PGE 59 >gi|269837331|ref|YP_003319559.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269786594|gb|ACZ38737.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 146 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R E + S LA AG D + ++ + R P+ E++ K+ A T Q Sbjct: 16 LKRFREEARTSQSRLAESAGFDHSYVSRLESGN-----RTPTREAVVKLADALGLTPEQR 70 >gi|167838352|ref|ZP_02465211.1| putative DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 105 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 AI + LT + +A + G ++ ++ + + PS ++ K AA Sbjct: 42 LRAILAIRHEAGLTQAQVAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97 >gi|167463700|ref|ZP_02328789.1| Transcriptional regulator, Cro/CI family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 70 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 13 IDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGI 46 I + R+ +T + LA+K G T+ + ++ Sbjct: 4 IAELRARNGKMTQTELAKKIGTSQTTISAWEKDIS 38 >gi|114800333|ref|YP_761750.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740507|gb|ABI78632.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 75 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 6/72 (8%) Query: 9 IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + E H ++ + LA G+ + + PS ES F+I + Sbjct: 7 ITNRIRELRESHGAMSQAALAEAIGVTRQTVIAIELGKY-----SPSLESAFRIARVFDL 61 Query: 68 TICQLLDLPFSD 79 I + Sbjct: 62 GIEDVFGWQPPP 73 >gi|33862612|ref|NP_894172.1| putative signal peptidase [Prochlorococcus marinus str. MIT 9313] gi|33634528|emb|CAE20514.1| putative signal peptidase [Prochlorococcus marinus str. MIT 9313] Length = 118 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 11/110 (10%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRT 177 + + + + SM P GD++I ++ G ++++ Sbjct: 3 PTANWRSLFLLLSGLRRHARVDGDSMSPSLAPGDLVIFQPITRYDRRLKAGCVVVVRHPL 62 Query: 178 GDIV--AKVLISRRGRSIDLMSLNCCYPVDT-----VEMSDIEWIARILW 220 K LI+ ++L N D+ V + IA +W Sbjct: 63 KPATLLIKRLIAINNSGLELRGDNEQASTDSRHFGLVNRDSLLGIAECVW 112 >gi|332968066|gb|EGK07153.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 152 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + LAR+ G+ ++ +R R PS + +I + Sbjct: 12 LGQRLRTLRLEKKMRQEDLAREIGISKSAIGMYERGE-----REPSLILLREIADFFRVS 66 >gi|332359913|gb|EGJ37727.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 120 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 5/75 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + NLT + ++R+ G+ +++ ++ + + KI N + Sbjct: 4 ERLKALRLEANLTQNDVSRQFGVSQPTYSNWEKGEKKPTP-----DKYPKIAEFYNVSTD 58 Query: 71 QLLDLPFSDGRTTEK 85 LL Sbjct: 59 YLLGKSDYKNSDEID 73 >gi|323481376|gb|ADX80815.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 71 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 4/40 (10%), Positives = 13/40 (32%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R + + + LA+K + + + + Sbjct: 5 SNLSRYRKEKGFSQTELAKKMNVTQQCISSWQTGRTIPKP 44 >gi|323357298|ref|YP_004223694.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273669|dbj|BAJ73814.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 91 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 1/77 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATN 66 ++ + + R + L+ +A AGL ++ K ++ G P +++ + Sbjct: 14 ELGKRLLRARAQRGLSQEHVAHAAGLATFTYRKLEKGESNPGTPANPRLKTLVALAEVLE 73 Query: 67 ETICQLLDLPFSDGRTT 83 ++ +L+ Sbjct: 74 MSLEELIPARPGGVAPG 90 >gi|320333052|ref|YP_004169763.1| helix-turn-helix domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754341|gb|ADV66098.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM 21211] Length = 188 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 1 MTSF---SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 MT+ + I I E + + LA +AG+ + +K +R Sbjct: 1 MTTIGDDTSALIARRIRVEREARQWSQADLAERAGVAKATISKVERG 47 >gi|281416408|ref|YP_003347432.1| cro-like protein [Streptococcus phage Abc2] gi|226823059|gb|ACO83186.1| cro-like protein [Streptococcus phage Abc2] Length = 67 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 17/40 (42%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 I + RHNLT A+ G P + + ++ + + Sbjct: 10 IKELRARHNLTQEEFAKTVGTTPQTVSAWEKNVLSISPKN 49 >gi|257866249|ref|ZP_05645902.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257873237|ref|ZP_05652890.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257875884|ref|ZP_05655537.1| DNA binding protein [Enterococcus casseliflavus EC20] gi|257800207|gb|EEV29235.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257807401|gb|EEV36223.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257810050|gb|EEV38870.1| DNA binding protein [Enterococcus casseliflavus EC20] Length = 172 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 14/141 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + E L+ + +A K + S +K + +P E++ + + Sbjct: 3 LAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRG-----YPDIENLILLSDLYQVS 57 Query: 69 ICQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 I + L + ++ + K++++ LL + + G + P Sbjct: 58 IDELLRENEALKERIETNNQEINDKKEKLSLLQRTMAADKDESLLLLLLAGIG--SFLFP 115 Query: 122 EIRSPHNGIYAIQTQDTRHKT 142 + + Sbjct: 116 LGLILDGFVLWRNKKANNFYV 136 >gi|256394502|ref|YP_003116066.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360728|gb|ACU74225.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 65 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + + L+ L G+ + N ++ + PS +I T+ + Sbjct: 6 RALRQGKGLSQQDLGEALGVSRQTVNAIEQSRYD-----PSLPLAIRIARYFGTTVEGMF 60 Query: 74 D 74 Sbjct: 61 H 61 >gi|268589692|ref|ZP_06123913.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291315003|gb|EFE55456.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 103 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 5/85 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H I I + L+ + LA K L ++ + + + I Sbjct: 1 MDIHTIIGIKIKNRRKELGLSGANLADKLNLSQQQISRYENGINK-----IPINHLVDIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87 A N I S+ ++ + + Sbjct: 56 EALNCPIEWFFQGYVSNSKSNKNEP 80 >gi|239623531|ref|ZP_04666562.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521562|gb|EEQ61428.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 115 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 18/43 (41%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 K + I + E L+ + LA K G+D + + F + Sbjct: 6 KTLGTVIRKAREEQGLSQASLAEKLGIDVRTIINIENFRGNPK 48 >gi|187778278|ref|ZP_02994751.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] gi|187771903|gb|EDU35705.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] Length = 180 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I ++ + N+T L + G+ + + R PS E + KI + Sbjct: 36 LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNA-----RKPSYEVLIKIADFFCVS 90 >gi|229541963|ref|ZP_04431023.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326383|gb|EEN92058.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 71 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + +T LA++ + + + PS E KI + Sbjct: 2 VKNNIKLLRKEIGITQEQLAKELKITRQTVITIENHRYN-----PSLELALKIAKFFGKN 56 Query: 69 ICQLLDLPF 77 + ++ L Sbjct: 57 VEEIFFLEE 65 >gi|28563899|ref|NP_788220.1| hypothetical protein OB3501 [Oceanobacillus iheyensis HTE831] Length = 76 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I I + T A++ L + +R + PS + + +I + Sbjct: 4 KRIGRRIKAFRKLKGYTQIQFAQEMKLSTSKLGNIERGTKQ-----PSDQLLAEIAEKLS 58 Query: 67 ETICQ 71 + + Sbjct: 59 ISKEE 63 >gi|332666712|ref|YP_004449500.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335526|gb|AEE52627.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 174 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 18/43 (41%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + +I I + + LT LA+K+G ++ + + Sbjct: 109 KNPEIGLMIKQARKDAGLTQEELAQKSGTSKHYISRLENNKAD 151 >gi|310827798|ref|YP_003960155.1| SOS-response transcriptional repressor [Eubacterium limosum KIST612] gi|308739532|gb|ADO37192.1| SOS-response transcriptional repressor [Eubacterium limosum KIST612] Length = 189 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 21/154 (13%) Query: 5 SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K+I E I + PS + G TS S +E R+ T + + Sbjct: 28 KQKQILEFIKKQTRECGYPPSVREICEAVGFKSTSSVHSHLKTLEQRSYIRRTSLKTRAI 87 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 N+ L+ +D + + + V +P Sbjct: 88 DVINKDDDDGLENFQTDREMVTLPL-----------LGKITAGDPILAAEDIMDQVPLP- 135 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155 + + + + TSM+ GD Sbjct: 136 ------LSFVGTGEHFLLRVKGTSMINAGILDGD 163 >gi|325677709|ref|ZP_08157361.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110677|gb|EGC04841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 369 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 16/40 (40%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I I ++ + ++T LA G+ + ++ + Sbjct: 3 IGATIKQLRQEQDITQEQLADALGITSRAVSQWETDRTAP 42 >gi|126737472|ref|ZP_01753207.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126722057|gb|EBA18760.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 193 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 5/79 (6%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + I + + + +LT LA + GL ++ +R + R + I A Sbjct: 9 TQPIIGARMRELRKAKHLTLKQLAAETGLSIGYLSQLERQDADPSIRALNV-----IGKA 63 Query: 65 TNETICQLLDLPFSDGRTT 83 I P Sbjct: 64 LGVGINWFFPGPEDQEGPE 82 >gi|115379785|ref|ZP_01466856.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|310820720|ref|YP_003953078.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115363203|gb|EAU62367.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309393792|gb|ADO71251.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 116 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 8/80 (10%) Query: 1 MTSFSHKKIWEAIDRMAERH--NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ K+I + I + + T LA +A + + + +R R E++ Sbjct: 1 MSEL-GKRIGQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGE-----RVAHVETL 54 Query: 59 FKILAATNETICQLLDLPFS 78 + A ++ +L Sbjct: 55 AALAGALGVSLGELFAGTEQ 74 >gi|91772552|ref|YP_565244.1| XRE family transcriptional regulator [Methanococcoides burtonii DSM 6242] gi|91711567|gb|ABE51494.1| Helix-turn-helix type 3 containing CBS sensor transcriptional regulator, XRE family [Methanococcoides burtonii DSM 6242] Length = 185 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 10/111 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + LT S LA++AG+ + + ++ P ++ KI A E Sbjct: 7 ERLRQKRLDLALTQSELAKRAGVSQPLIARIEAGDVD-----PRLSTLRKICTAFEEVEK 61 Query: 71 QLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + ++E + L S P G+ Sbjct: 62 KKVLARDIMHTLVIFVSSEDSVESAVHLMEENGFSQVPVIDQGVPVGSISE 112 >gi|1657420|gb|AAC45971.1| DNA cytosine methyltransferase M.SenPI [Salmonella enterica subsp. enterica serovar Enteritidis] Length = 379 Score = 43.6 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 5/137 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDP---TSFNKSKRFGIEGRNRWPSTESIFKILA 63 I I ER ++T A GL + + +R + +++ Sbjct: 3 DNIAATIKGKRERLHMTQKEFADALGLSKYGDRTIRRWERGET--KPTGAELKAVMDFPD 60 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + D + + N P+ Sbjct: 61 TPPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHANYGDFPDG 120 Query: 124 RSPHNGIYAIQTQDTRH 140 I + Sbjct: 121 DITKIDEKDIPDHEILV 137 >gi|313157775|gb|EFR57186.1| DNA-binding helix-turn-helix protein [Alistipes sp. HGB5] Length = 154 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 5/122 (4%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 + + L PS LA G++P + + P + + KIL L L Sbjct: 8 LMKNEGLKPSQLAELLGINPAGISHILAGRNK-----PGFDLLQKILRRFPRINPDWLLL 62 Query: 76 PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135 E + S G G+ + PE A Q Sbjct: 63 DSDKMYRDEPPAQSSAPQPMSQPASPGGDLFGLASGRHPLEEKRQPETTEKATDDPAPQR 122 Query: 136 QD 137 Q Sbjct: 123 QL 124 >gi|313884783|ref|ZP_07818537.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619982|gb|EFR31417.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 188 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + R+ H+++ LA+ + S +K ++ E PS E + ++ N + Sbjct: 4 DNLKRIRLEHDMSQEDLAQVMAVTRQSISKYEKGTAE-----PSFEKLAILVDYFNLSYD 58 Query: 71 Q 71 Sbjct: 59 D 59 >gi|312114460|ref|YP_004012056.1| peptidase S24/S26 domain-containing protein [Rhodomicrobium vannielii ATCC 17100] gi|311219589|gb|ADP70957.1| peptidase S24/S26 domain-containing protein [Rhodomicrobium vannielii ATCC 17100] Length = 162 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 18/124 (14%) Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCG 168 + V + P G + + +D SM + GD +++ + + Sbjct: 27 AEGSEPVSSLAMPVFGEEGLPGRCVFIDIRDKSMSHPYERVSFEPGDKALIDLDAKPSPS 86 Query: 169 DRLLIKPRTGDIVAKVLISRRGRS------IDLMSLNCCYPVD---TVEMSDI----EWI 215 D +L L GR+ IDL+ LN + ++ I I Sbjct: 87 DFVLALVPEEQTALFRLYREVGRAEDGSIIIDLVPLNPNFRTIRISSISPGQIIGVCRSI 146 Query: 216 ARIL 219 R+ Sbjct: 147 HRVF 150 >gi|228945460|ref|ZP_04107812.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814213|gb|EEM60482.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 149 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 5/110 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ E + +A+K G+ + K + P +++ + N T Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----CPDIDNLILLSEMYNVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +L+ + E+ G F + + + Sbjct: 58 LDELIKGNQNIKEKIHIDEENEDFEKENEFGFYIGFGLLIMSAFIDYEGI 107 >gi|229030998|ref|ZP_04187014.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] gi|228730345|gb|EEL81309.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] Length = 374 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 18/189 (9%), Positives = 56/189 (29%), Gaps = 12/189 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + +T LA G+ S +K + +P + + + N Sbjct: 5 QIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +I +L+ + K F ++ + Sbjct: 60 SIDELICFTPQMEQEDIKNLYHRLAEAFSEEPFDEVMIECREIIKKYYSCFPLLLQMGLL 119 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + T+D + + + + + + + L+ + + ++++ Sbjct: 120 FINHHMLTKDMGKRI-------EILEEAMSLFSRVQEESDDVSLVKEAVSFQATCYLILN 172 Query: 188 RRGRSIDLM 196 + + L+ Sbjct: 173 KPNEVLQLL 181 >gi|239815201|ref|YP_002944111.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801778|gb|ACS18845.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 5/115 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + L+ + LA +G+ +K +R P+ + ++ A Sbjct: 18 IAARLLALRQAKALSLAELAELSGVSKAMISKVERAES-----SPTAVLLGRLAAGLGVP 72 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 + QLL + R + ++ G + + +P Sbjct: 73 LAQLLTEEKASPRRLRPRAEQEVWRDPEAGYLRRQVAERGASGGVEMVEIELPRS 127 >gi|218281525|ref|ZP_03487954.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] gi|218217314|gb|EEC90852.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] Length = 255 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 5/51 (9%), Positives = 16/51 (31%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + ++ LA K + + ++ + + K+ Sbjct: 7 ILELRTQRGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKL--LSKVFD 55 >gi|251799147|ref|YP_003013878.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546773|gb|ACT03792.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 105 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + ++ ++++LT LA AG+ + + + + P +I KI Sbjct: 3 ISANLKKLRDKYDLTQQDLADIAGVTNKAVSAWETG-----LKEPRMGAIEKIANRFG 55 >gi|218528591|ref|YP_002419407.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520894|gb|ACK81479.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 198 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 5/79 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + I R+ +L+ S L+ A + + +K + I PS SI I +A Sbjct: 17 EKALGHQIRRLRRERDLSLSDLSSAADVSQSMISKIEHGAI-----SPSLASINAIASAL 71 Query: 66 NETICQLLDLPFSDGRTTE 84 N I L + Sbjct: 72 NVPITALFAAFEETRDCSH 90 >gi|90577887|ref|ZP_01233698.1| hypothetical protein VAS14_12589 [Vibrio angustum S14] gi|90440973|gb|EAS66153.1| hypothetical protein VAS14_12589 [Vibrio angustum S14] Length = 155 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 3/119 (2%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + + L++ +GL + + ++ G S +S+ + + Sbjct: 3 IRKLRLQRGWSQEQLSQLSGLSIRTIQRIEQGQKAGLE---SLKSLAAVFEIQVSDLQME 59 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + T ++K+ + S V N P+ Sbjct: 60 PPMNKEISITEDEKQAINYVKGIKGFYSNLTTYVLVISALFVINYFTSPDYWWAIWPAL 118 >gi|322370379|ref|ZP_08044938.1| HTH/CBS domain-containing protein [Haladaptatus paucihalophilus DX253] gi|320550087|gb|EFW91742.1| HTH/CBS domain-containing protein [Haladaptatus paucihalophilus DX253] Length = 179 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 5/88 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + LT S LA +AG+ + + G + P ++ +I+ A E+ + Sbjct: 9 LREHRTDLGLTQSELAERAGVSQPLIARIE-----GDDVDPRLSTLRRIVNALEESEGDI 63 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + ++ + Sbjct: 64 VRAGDLLHKSVVSVAPTDTVSEAVQKMQ 91 >gi|300854654|ref|YP_003779638.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434769|gb|ADK14536.1| predicted transcription regulator with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R LT L RK L + + + + PS + KI + + + Sbjct: 6 LKRYRRDLGLTQRDLGRKLDLSKATIGQLETG-----LKEPSRILLEKIYKISGKNMNWW 60 Query: 73 LDLPFSD 79 LD Sbjct: 61 LDKNEQF 67 >gi|291167009|gb|EFE29055.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC 35896] Length = 181 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 26/75 (34%), Gaps = 2/75 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I + +++ ++ LA K + + ++ + + + + K+ T + Sbjct: 2 KLEEKILALRKQYGMSQEELAGKLNVSRQAISRWEMGTAQ--PDVSNILQLSKVFCVTTD 59 Query: 68 TICQLLDLPFSDGRT 82 + Sbjct: 60 YLLNDECEQEIHRSE 74 >gi|307730928|ref|YP_003908152.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307585463|gb|ADN58861.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 229 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 6/150 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 32 VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALRVS 86 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L ++G E+ ++ S PT Sbjct: 87 VAAFLRRHATNGFEHLPAERSSRIVSSNGRYSARPLYPDNEPT-AAEFHELRIAPLHTEA 145 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 G+ + ++ L+ Sbjct: 146 GVRRAPGTTVNLVVSEGTLEVSVHDQRQLL 175 >gi|295700669|ref|YP_003608562.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439882|gb|ADG19051.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 215 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ +T L+R AG+ + ++ +R P+ +++ A Sbjct: 37 RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 91 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L P S +IP L + + G + + Sbjct: 92 SLDSLFAPPKSPEAIAVSGPHDIPTLSGHEAKYQLRVWGPIELAGK-FEWYEL 143 >gi|260203616|ref|ZP_05771107.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis K85] gi|289573051|ref|ZP_06453278.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289537482|gb|EFD42060.1| transcriptional regulator [Mycobacterium tuberculosis K85] Length = 474 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ ++ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 61 ATFFASQDDTRLAAELREVTLDRDLDIAIDPHEVAEMVSAHP 102 >gi|291614894|ref|YP_003525051.1| XRE family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291585006|gb|ADE12664.1| transcriptional regulator, XRE family [Sideroxydans lithotrophicus ES-1] Length = 374 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 2/93 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 AI +T LA + G + + + R S + L T + + Sbjct: 8 AAIQSALAERGITQKQLASEVGTSSQAVTNWLKG--KDFPRPASLLKLATTLGLTFDQLV 65 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 D+ +K + + + G Sbjct: 66 LTNDVGRPVIAYRKKANAKTTDAHIAKAEGIGM 98 >gi|242399365|ref|YP_002994789.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] gi|242265758|gb|ACS90440.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] Length = 65 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 15/41 (36%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + + E LT LA+ G+ + ++ + R Sbjct: 3 NRLRELRELKGLTQEDLAKTLGVTRQTIIAIEKGKYDPSLR 43 >gi|240140265|ref|YP_002964743.1| hypothetical protein MexAM1_META1p3756 [Methylobacterium extorquens AM1] gi|240010240|gb|ACS41466.1| Hypothetical protein MexAM1_META1p3756 [Methylobacterium extorquens AM1] Length = 70 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 6/61 (9%), Positives = 18/61 (29%), Gaps = 1/61 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT ++ + + + A AG+ + +R + + + Sbjct: 1 MTDLTYDDVRARLSTAIREAG-SQKAFAAMAGISRPYLSDVLAGRRPAGDRVLAALDLRR 59 Query: 61 I 61 + Sbjct: 60 V 60 >gi|254387621|ref|ZP_05002860.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294814993|ref|ZP_06773636.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326443362|ref|ZP_08218096.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197701347|gb|EDY47159.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294327592|gb|EFG09235.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 276 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 17/49 (34%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 +K + + + + T LA +AG + + R+ S Sbjct: 14 REKFGQVMRSLRDERGWTQEELAERAGCSSQHISAVETGRRPPTRRFAS 62 >gi|146300361|ref|YP_001194952.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154779|gb|ABQ05633.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 129 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 7/118 (5%) Query: 1 MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M++F+ I I R+ E ++ LA+ G + + + E + Sbjct: 1 MSTFTKPSHIGRKISRIRELRDMKQEALAQALGTSQQTISALENSE------EIDDEKLK 54 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 +I A ++ L + + + + F+ Sbjct: 55 QIAKALGVSVEALKNFSDEAAINYFNNFYDNSNGTNFGTNNNCTFNPLDKLIEAYEEN 112 >gi|86739571|ref|YP_479971.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566433|gb|ABD10242.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 497 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 42/163 (25%), Gaps = 9/163 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + H LT LA + G D + +K + GR ++ I + Sbjct: 20 VGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVE----SGRRAIHDISTLRHIARNLALS 75 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-----TVGVPEI 123 + P S + P + + + ++ + PE Sbjct: 76 PEDVGLAPGSMTDRRRETAPRSPAAEQAAASQRAWRLTRDHLNHHRISLARAAVRLYPET 135 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 +G+ A + + + Sbjct: 136 DRLGSGLLARPGWVWDTPVDIDDVTLGWHDSAEAPTIRGDEPE 178 >gi|49082594|gb|AAT50697.1| PA2312 [synthetic construct] Length = 194 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 5/108 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +++ + R+ + NL+ LAR +G+ + + PS + + KI Sbjct: 7 DLIGQRVAHNLPRLRGKRNLSLDALARISGVSRAMLAQIESGRSV-----PSIKVLCKIA 61 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 ++ LD G ++ L+ + + Sbjct: 62 QGLKVSVAAFLDDRAFAGVAVLPAQQSKRLVSADGAFTSRALFPFDVA 109 >gi|116748595|ref|YP_845282.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697659|gb|ABK16847.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 204 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 20/172 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + ++++LT LA K GL ++ + + P ++F++ A Sbjct: 17 NIGNKVRELRQKNHLTLQDLAVKTGLSKPFLSQIENNKVV-----PPVATLFRLARALKV 71 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-------VGV 120 + D R ++KE L P G K + V Sbjct: 72 ALGHFFQESVEDDRIAITRKKERVRLDRRPHQEKGLVHYIYTALETKKSNKSMEPFLVEF 131 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172 P + + ++ + + + ++ GD + Sbjct: 132 PTQEKEEMVFLSHEGEEFLYVMEGQVEFRTL--------DRVETLDPGDSIY 175 >gi|89895497|ref|YP_518984.1| hypothetical protein DSY2751 [Desulfitobacterium hafniense Y51] gi|89334945|dbj|BAE84540.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 110 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I ++ + + LA++A L ++ + + +P+ E+I + T Sbjct: 8 DIQERIKQLMDTKGWSEYKLAKEANLPQSTISHLFKRNNA--PTYPTIEAICRAFGITMA 65 Query: 68 TIC 70 Sbjct: 66 QFF 68 >gi|125973974|ref|YP_001037884.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004685|ref|ZP_05429662.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281418133|ref|ZP_06249153.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125714199|gb|ABN52691.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] gi|255991420|gb|EEU01525.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281409535|gb|EFB39793.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316941226|gb|ADU75260.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 104 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 21/45 (46%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 ++ + + +M + + S +A+K+GL ++ + G R Sbjct: 34 EVLKQLVKMRKEMGFSQSDVAKKSGLTQQMVSRIETVGNSPTLRN 78 >gi|324993115|gb|EGC25035.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995581|gb|EGC27493.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327461381|gb|EGF07712.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] gi|327489239|gb|EGF21032.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] gi|332361469|gb|EGJ39273.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 94 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + E+ + + +A G + + + + S+ ++ + Sbjct: 2 LGKQLKFIREQRGYSQAQIAESLGTTRQTISNWENDKTI-----LDSASLIRLADFYQIS 56 Query: 69 ICQLL 73 + +L Sbjct: 57 LDELC 61 >gi|313887816|ref|ZP_07821496.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846159|gb|EFR33540.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 70 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + L+ LA+ GL S + I P+ E+ +KI + Sbjct: 8 IENKIAEYRKELGLSQHKLAKAVGLKRRSIMAYENNTI-----SPTLETAYKICKVLGKD 62 Query: 69 ICQLLDLP 76 I ++ Sbjct: 63 IKEVFIFK 70 >gi|307323870|ref|ZP_07603079.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890319|gb|EFN21296.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/150 (8%), Positives = 38/150 (25%), Gaps = 10/150 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + T + L+ G+ ++ ++ + R P+ E + + A Sbjct: 16 VGPRLRALRRTRGTTLAQLSETTGISLSTLSRLESGQ-----RKPTLELLLPLAKAYGVQ 70 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + +L+ P + + F P P+ Sbjct: 71 LDELVGAPATGDPRVHPRPFTRHGQTFVPLTRYLGGLHAYKQI-----MPPRPQGVREEP 125 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 + + D+++ Sbjct: 126 LEQRAHEGYEWLYVLSGRLRLALGEHDLVL 155 >gi|260892046|ref|YP_003238143.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864187|gb|ACX51293.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 81 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 ++ + R LT S +AR GL S+ +R PS + +I N ++ Sbjct: 3 SSLRKARLRAGLTQSEVARLVGLTRASYTNIERGHKN-----PSVVTALRIAQVLNRSVE 57 Query: 71 QLLDLPFSDGRTTEKKEKEIP 91 +L G+ +++ Sbjct: 58 ELFSDEPPAGQAAKREANTTM 78 >gi|260427221|ref|ZP_05781200.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421713|gb|EEX14964.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 184 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 36/92 (39%), Gaps = 5/92 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ ++ + ++ LT LA +G+ + ++ ++ + P+ E + K Sbjct: 1 MSDTLTSRLSRRLAQLRAERGLTLDQLASASGVSRAALSRLEKAEV-----SPTAEVLGK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 + A T+ +LL + ++ + Sbjct: 56 LCTAYGLTMSRLLAMVEESVTPLVPRDAQAVW 87 >gi|291302787|ref|YP_003514065.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572007|gb|ADD44972.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 503 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 6/63 (9%), Positives = 19/63 (30%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ++ +T G P+ + + R P + + + Sbjct: 35 LGKRIRHLRKQRGMTLDAFGEAIGTAPSQLSMIENG-----KREPKLSMLRALARELGVS 89 Query: 69 ICQ 71 + Sbjct: 90 SDE 92 >gi|255280876|ref|ZP_05345431.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268813|gb|EET62018.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 359 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 6/46 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 M + I + LT +A + G+ + NK ++ Sbjct: 1 MPMNT------VIRERRKALGLTQEQVAERLGVSAPAVNKWEKGNT 40 >gi|147921221|ref|YP_684967.1| transcription regulator [uncultured methanogenic archaeon RC-I] gi|110620363|emb|CAJ35641.1| predicted transcription regulator [uncultured methanogenic archaeon RC-I] Length = 239 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 E I + + ++ LA G+ P+ + + GR + P T I KI+ Sbjct: 27 GETIKKWRKNFGISQIDLASSIGVSPSVISDYE----SGRRKSPGTTIISKIVE 76 >gi|331271170|ref|YP_004385879.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] gi|329127665|gb|AEB77607.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] Length = 121 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 5/97 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + L+ +K G+ + + +PS + KI N T L Sbjct: 7 IQKLRKAKKLSQKEFGKKLGIHDEIILQWESGTS-----YPSINELIKISDVFNITTDSL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 L ++ + + + + F + Sbjct: 62 LKDNINEYEDDWETDIIMGCAILGMACGFIFDNDLCL 98 >gi|323701137|ref|ZP_08112812.1| helix-turn-helix domain protein [Desulfotomaculum nigrificans DSM 574] gi|323533739|gb|EGB23603.1| helix-turn-helix domain protein [Desulfotomaculum nigrificans DSM 574] Length = 143 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 48/136 (35%), Gaps = 14/136 (10%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + ++ E+ L+ + + AG++ + ++ +R + PS +++ ++ Sbjct: 5 QDIGSYLLQLREQFELSTRDVEKLAGVNSSFLSQIERGVKK-----PSPKTLARLAPVYE 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + L+ + K + FD FP + + + Sbjct: 60 VSYENLMVVAGYLPAPETSGAKSLQ---------EKVFDPNYFPNEIDLKELLLVANINF 110 Query: 127 HNGIYAIQTQDTRHKT 142 + A++ ++ + Sbjct: 111 NGERMALEDKEKLLRI 126 >gi|320326795|gb|EFW82833.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882738|gb|EGH16887.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 118 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 5/78 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + H LA+ G + + ++ +R P+ + + K+ A + Sbjct: 8 IGVRVRAFRKAHGFNQDQLAKLVGCEKMTISRYERGVGT-----PNLDHLVKLCVALKIS 62 Query: 69 ICQLLDLPFSDGRTTEKK 86 +LL Sbjct: 63 PAELLPADGISSSREHLP 80 >gi|322434546|ref|YP_004216758.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321162273|gb|ADW67978.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 135 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 5/97 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + ++ + ++ GL ++ + PS E++ KI A + Sbjct: 22 NIGTTIRDYRLQRGMSQGDIEKRTGLLRCYLSRVENGHTV-----PSLETLQKIAGALDL 76 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + Q + E + + Sbjct: 77 QLSQFFAEDQVQKEVSTLNLSEEEIRFLTQVQRYSAH 113 >gi|229186773|ref|ZP_04313930.1| Transcription regulator [Bacillus cereus BGSC 6E1] gi|228596708|gb|EEK54371.1| Transcription regulator [Bacillus cereus BGSC 6E1] Length = 137 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 9/96 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M KI ++I +R+NL+ LA K G+ + +K ++ P E++ Sbjct: 1 MKM----KISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGT-----PDIENLIL 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + N ++ L+ EK I + Sbjct: 52 LSEEMNISLDNLIKGNNGIKERIMNNEKAIKIHLLV 87 >gi|255531474|ref|YP_003091846.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344458|gb|ACU03784.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 109 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 7/89 (7%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ +++ + +A++ + +F+K + + + + +I + Sbjct: 4 IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITD-----INISRLAQIANLFEVS 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 ++ + ++ +E Sbjct: 59 TMDIISKEGENPQSLNFEEINGLKEKLAQ 87 >gi|227486494|ref|ZP_03916810.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235542|gb|EEI85557.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 76 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I++ + L+ L +K G+ TS NK + PS ++ I A + Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTI-----PSLKTANDIANALGVCMY 57 Query: 71 QLLD 74 Q+ D Sbjct: 58 QIFD 61 >gi|262200762|ref|YP_003271970.1| hypothetical protein Gbro_0761 [Gordonia bronchialis DSM 43247] gi|262084109|gb|ACY20077.1| Protein of unknown function DUF2083,transcriptional regulator [Gordonia bronchialis DSM 43247] Length = 475 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 18/51 (35%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 + + + ++ L+ LA+ L P+ N+ + + S Sbjct: 1 MTKTYVGSRLRQLRSERGLSQVALAQTLSLSPSYLNQIEHDARPLTPKVLS 51 >gi|225377603|ref|ZP_03754824.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] gi|225210579|gb|EEG92933.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] Length = 156 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I ++ + LA + + + K + P ++ I Sbjct: 13 NLGEKIKECRKQAGFSQEQLAERLNVSRQAITKWETNKGI-----PDIVNLIAISDEFGL 67 Query: 68 TICQ 71 ++ + Sbjct: 68 SLDE 71 >gi|212711417|ref|ZP_03319545.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM 30120] gi|212685873|gb|EEB45401.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM 30120] Length = 189 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 63/186 (33%), Gaps = 19/186 (10%) Query: 1 MTSFS-----HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 M + + + I +++ ++ ++ S LARKAG+ ++ ++ + PS Sbjct: 1 MFTLTLFTPPIELISKSLACERQKSGMSLSELARKAGIAKSTLSQLEAGSGN-----PSI 55 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 E+++ + A + +L++ + E + + + + Sbjct: 56 ETLWALCVALDIPFSRLIEEKRAAVTVIRHGEGTPVSAEHANYLAYLLSSAPANSQRDIY 115 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175 V P R + + + +++ +++N GD + + Sbjct: 116 TVVAQP-GRDRISSPHMQGVTEHIILMSGRALVGPLENP--------VELNVGDYIHYRG 166 Query: 176 RTGDIV 181 I+ Sbjct: 167 DEPHIM 172 >gi|210622958|ref|ZP_03293463.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275] gi|210153924|gb|EEA84930.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275] Length = 141 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 2/108 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + LT +A+ G S + + + S+ K+ + Sbjct: 4 LGSRLKALRQEKGLTQKEVAKLIGTTDVSIGRYEMDARV--PKADILNSLAKLYDVEIDY 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + + +KK+ E L G F Sbjct: 62 LLTGKEETEQPLNDRDKKDIEKDLKKIMDDFRDGESGPVYFDGIELDE 109 >gi|160935566|ref|ZP_02082941.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC BAA-613] gi|158441310|gb|EDP19020.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC BAA-613] Length = 115 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 18/43 (41%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 K + I + E ++ + LA K G+D + + F + Sbjct: 6 KTLGTVIRKAREEQGMSQASLAEKLGIDVRTIINIENFRGNPK 48 >gi|15896567|ref|NP_349916.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15026404|gb|AAK81256.1|AE007829_9 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325510728|gb|ADZ22364.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 69 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + ++H L+ LA G+ + +R S +KI TI + Sbjct: 4 RIQELRKQHKLSQEELALAVGVTRQTITSLEREKYTA-----SLVLAYKIAHYFGLTIEE 58 Query: 72 LLDLPF 77 + D Sbjct: 59 IFDFSE 64 >gi|21223466|ref|NP_629245.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256785428|ref|ZP_05523859.1| DNA-binding protein [Streptomyces lividans TK24] gi|5541920|emb|CAB51134.1| hypothetical protein [Streptomyces coelicolor A3(2)] gi|14717102|emb|CAC44208.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 190 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 8/134 (5%), Positives = 33/134 (24%), Gaps = 3/134 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + +T + L+ G+ ++ ++ + + +I Sbjct: 10 DAVGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLEL--LLPLARIYDVPL 67 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + + G + P+ P+ Sbjct: 68 DDLVGAPRTGDPRIHLKPVRRFGMVFVPLSRRPGGTQAFKMIIPSRPAPLE-PTPQTHEG 126 Query: 127 HNGIYAIQTQDTRH 140 +Y + + Sbjct: 127 SEWLYVLSGRLRLL 140 >gi|326441778|ref|ZP_08216512.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 301 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + + E+ +T AGL + ++ +R +G RW E + + Sbjct: 25 QLGFRLLALREQRGMTAEHAGDLAGLSKATVSRYER--AKGNVRWNHVEMLCRA 76 >gi|304440440|ref|ZP_07400329.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371192|gb|EFM24809.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 132 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + E++NL+ LA+ + ++ ++ + R PS + I N Sbjct: 10 NLGSNIKYLREKNNLSQKELAKILNISNSTLSQYESNV-----RVPSDDIKILIADYFNV 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 ++ LL + + +K + + FP Sbjct: 65 SLDYLLGRSSNPHKNNKKTKVDELEEDFPEG 95 >gi|295107554|emb|CBL05097.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 451 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 6/105 (5%) Query: 6 HK-KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 H+ I I R +T LA G+ + +K + P + +I A Sbjct: 2 HEVNIGATIARERSAAGVTQGALAAHLGVTKAAVSKWELGQS-----LPDVALLPRIAAY 56 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 T+ +L + F + Sbjct: 57 FGITLDELFAFRPQLTEDEVRDVYLELCRLFAEDAGAAYARMDEL 101 >gi|296491936|ref|YP_003662403.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] gi|289176823|emb|CBJ92992.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] Length = 291 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 K I + I ++ N+T GLA++AG++ + ++ + G+ R ST+ + Sbjct: 200 KNIGQRIRVRRKKLNVTLQGLAKQAGMNQQTLSRYE----TGKKRITSTDLVI 248 >gi|260495101|ref|ZP_05815230.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|260197544|gb|EEW95062.1| transcriptional regulator [Fusobacterium sp. 3_1_33] Length = 184 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 48/191 (25%), Gaps = 36/191 (18%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + ++ LA K L + ++ ++ PS E++ KI Sbjct: 3 IGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTL--- 54 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 D+ + E + S G I +N Sbjct: 55 -----DVRVAYLLEDEDDDIRNIEYIKKDSIKYIESLDSNIKMG----------ILLSNN 99 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186 ++ S Y G + + I ++ K Sbjct: 100 REKNMEPIIYEIGIDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148 Query: 187 SRRGRSIDLMS 197 +G S+ S Sbjct: 149 LLKGDSLYFKS 159 >gi|238852597|ref|ZP_04643007.1| signal peptidase I [Lactobacillus gasseri 202-4] gi|238834743|gb|EEQ26970.1| signal peptidase I [Lactobacillus gasseri 202-4] Length = 213 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186 + + SM P + D +I ++ GD +++ G + K +I Sbjct: 28 FFVLNKFVFANLTVSGISMQPTFENNDRVIALQHAKIKQGDIVIVDAPDEPGALYIKRVI 87 Query: 187 SRRGRSID 194 G ++ Sbjct: 88 GLPGDTVV 95 >gi|284032140|ref|YP_003382071.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811433|gb|ADB33272.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 73 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 8 KIWEAIDRMA-ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ I + + LT + LAR+ G+ + ++ PS E F+I Sbjct: 5 RVTNRIRALRTDHAELTQAELARRLGVTRQTVIAIEQGRY-----SPSLELAFQIAHVFG 59 Query: 67 ETICQLLDLPF 77 + + P Sbjct: 60 VPLADVFQYPG 70 >gi|225389221|ref|ZP_03758945.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme DSM 15981] gi|225044715|gb|EEG54961.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme DSM 15981] Length = 156 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 5/94 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + +LT + L G+ + ++ + P + + A + Sbjct: 5 QTGKFIAELRKEKSLTQAQLGDLLGVTNKTISRWENGNY-----MPDLAVLQSLCAVLDV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 I +++ D ++ LL + Sbjct: 60 NINEMISGRRLDEADFRQQADNNLLLSLDQARRM 93 >gi|219669933|ref|YP_002460368.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540193|gb|ACL21932.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 104 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I ++ + + LA++A L ++ + + +P+ E+I + T Sbjct: 2 DIQERIKQLMDTKGWSEYKLAKEANLPQSTISHLFKRNNA--PTYPTIEAICRAFGITMA 59 Query: 68 TIC 70 Sbjct: 60 QFF 62 >gi|182684266|ref|YP_001836013.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|221232045|ref|YP_002511197.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|182629600|gb|ACB90548.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|220674505|emb|CAR69066.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 117 DLSDLIHTNIYLVETFDE 134 >gi|160936303|ref|ZP_02083673.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] gi|158440772|gb|EDP18503.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I + +R L + LA G + K + IE I K L T Sbjct: 9 IGQRIKTLRKRKGLNQTQLANLIGKSLRTVQKYETGEIEVSI--DVVNEIAKHLDTTP 64 >gi|330817330|ref|YP_004361035.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327369723|gb|AEA61079.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 192 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 15/127 (11%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ L+ LA +AGL + +K +R PS ++ A + + Q Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLST-----PSVAVAMQLATALHVEVGQ 59 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L + T + E + + + R Sbjct: 60 LFASDEDEKAITVVRAGERIRVGGGSEDG----------ASAGYEVIAAEAGRKRLLPFM 109 Query: 132 AIQTQDT 138 D Sbjct: 110 LQPRHDF 116 >gi|322420304|ref|YP_004199527.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320126691|gb|ADW14251.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 181 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E + R+ ++LT LA +A L ++ + PS ++ I+ Sbjct: 2 KIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDAT-----SPSIATLKDIVDVFGI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90 ++ + K + Sbjct: 57 SMQEFFSEETDQDIVFGKDARVQ 79 >gi|291529806|emb|CBK95391.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + N+T +A+ G+ + +K + PS +S+ + +I Sbjct: 8 GARLKKYRNEKNITQERIAKILGVSNSMISKYENNTA-----SPSLDSLCTLSKELCVSI 62 Query: 70 CQLL 73 +L Sbjct: 63 DELC 66 >gi|289661679|ref|ZP_06483260.1| hypothetical protein XcampvN_00915 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 116 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 8/80 (10%), Positives = 24/80 (30%), Gaps = 4/80 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ + LA+K ++ + +R PS + ++ + + + Sbjct: 8 LAARIRAARIGVGMSQTELAQKLDVNRATVGHWERKNRFA----PSIDHLYAMSSVLRVS 63 Query: 69 ICQLLDLPFSDGRTTEKKEK 88 L + Sbjct: 64 PNWLFHGEDRPKLPEVGGVR 83 >gi|317131465|ref|YP_004090779.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] gi|315469444|gb|ADU26048.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] Length = 470 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 63/193 (32%), Gaps = 18/193 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILA---- 63 + E +D + ++ LT + LA +AG+ + + + R + + +++ K + Sbjct: 141 VSEKLDALMKKQKLTRAALAMQAGVAAITISSAARGKHISSEKAAAICKALGKPVDAVFT 200 Query: 64 ----ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 T + +L K ++E + + + + + Sbjct: 201 IHMSDTGLSDKTILHHHRLISAILAKAKRERLVPFNVAAEHATAPKAAHKEAKYLDDEQA 260 Query: 120 V---------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 P+IR I + + R + S + + ++ + A Q G Sbjct: 261 HTLLTLLLNEPDIRVKAALILLLFSGARRGELCGLSWPDIDFERHLINIERASQYQSGKG 320 Query: 171 LLIKPRTGDIVAK 183 ++ K + + Sbjct: 321 VVEKSTKNESSIR 333 >gi|289434553|ref|YP_003464425.1| Signal peptidase I [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170797|emb|CBH27339.1| sipY [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 189 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSIDL 195 K + TSM+P Y+ GD + + + D ++ TG+ K +I G I+ Sbjct: 43 VKVEGTSMVPTYQDGDRIFIEKITDPDRFDIIVFDEPPMIGTGEHFIKRVIGMPGDKIEF 102 Query: 196 M 196 Sbjct: 103 K 103 >gi|282876647|ref|ZP_06285506.1| signal peptidase I [Staphylococcus epidermidis SK135] gi|281294582|gb|EFA87117.1| signal peptidase I [Staphylococcus epidermidis SK135] Length = 188 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 8/70 (11%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 SM P + D ++++ + + GD ++ + + K LI + G I+ Sbjct: 31 TVSGLSMYPTFNNKDKVVVSKISKSLNHLKSGDVIVFHQNSNNDFIKRLIGKPGDQIEYK 90 Query: 197 SL----NCCY 202 + N Y Sbjct: 91 NDKLYINKNY 100 >gi|322417892|ref|YP_004197115.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320124279|gb|ADW11839.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 154 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I R+ + LT + LA G+ +F++ +R R P + K++ E Sbjct: 66 DISSDIRRIRKNLKLTQTELADAFGVGKVAFSRYERGET--RPPAP-LVKLLKLIERHPE 122 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 + ++ + P + E + Sbjct: 123 LLKEMQEQPLQGRYSREPTPR 143 >gi|228918792|ref|ZP_04082190.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840864|gb|EEM86108.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 108 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T LA L ++ +R R P ++ ++ N + Sbjct: 5 GNIIRDLRKQKGITQKELAHSLQLSESTIGMYERNE-----RQPDYNTLIRLADYFNVS 58 >gi|229100015|ref|ZP_04230935.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] gi|228683443|gb|EEL37401.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] Length = 66 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I T LA++ G+ + ++ PS FKI + I Sbjct: 4 NRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFKIANEFEKPIT 58 Query: 71 QLLDLPF 77 + D Sbjct: 59 DVFDYQE 65 >gi|257785038|ref|YP_003180255.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473545|gb|ACV51664.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 235 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 54/182 (29%), Gaps = 16/182 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ S + + I R+ T LA++ + P + +K + +P + Sbjct: 1 MTT-SSETLGRRIARLRLAKTATQERLAKELNVSPQAVSKWESDIN-----YPDISLLPD 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + ++ +LL + + + ++ + + PT + Sbjct: 55 LARFLGVSVDELLSGASAFAQESVAAQEGTAEVVSVAADEPAEIVEE--PTEQDNQGIAT 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGD 179 ++ K + +K D + G + + GD Sbjct: 113 QSSGFSFGKLFGKS----MVKVEKNDEADGSKKKD---VRLGNGSAKHGLHVYVVSNNGD 165 Query: 180 IV 181 +V Sbjct: 166 VV 167 >gi|259908745|ref|YP_002649101.1| Transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|224964367|emb|CAX55876.1| Transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|283478718|emb|CAY74634.1| Uncharacterized HTH-type transcriptional regulator ydcN [Erwinia pyrifoliae DSM 12163] Length = 189 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 13/144 (9%), Positives = 36/144 (25%), Gaps = 6/144 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H + + + + + A+ G+ + +R P+ +++K Sbjct: 1 MDRLQH-HLAQTLKAQRATRGWSLTQAAQMTGVSKAMLGQIERAES-----SPTIATLWK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + N + +D + + TG + V + Sbjct: 55 IASGFNLPFSSFIAADIADRGAARSQGQLQGYRQPNHGMQIVPLFPFDAETGFEMLVVEL 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144 + + + Sbjct: 115 VAGALSESSAHEQGVIEHAIVISG 138 >gi|222825162|dbj|BAH22319.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 115 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 8/78 (10%), Positives = 23/78 (29%), Gaps = 2/78 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ ++ + I ++ LT + L ++ G+ + + + K Sbjct: 1 MSKEWKVQLGKKIKQLRLDRGLTQTELGKRIGVSYRQIQRYENGSN--YILASRLYDLAK 58 Query: 61 ILAATNETICQLLDLPFS 78 L+ + Sbjct: 59 ALSIDVADFFTGMHTDSH 76 >gi|187933844|ref|YP_001884286.1| adenine-specific DNA methyltransferase [Clostridium botulinum B str. Eklund 17B] gi|187721997|gb|ACD23218.1| adenine-specific DNA methyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 194 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + E + + + ++ L R+ GL +K + PS E++ KI Sbjct: 2 VGEKVAKFRKILGISQRELGRRTGLSGQMISKIENNLTN-----PSLETLGKIA 50 >gi|209544910|ref|YP_002277139.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532587|gb|ACI52524.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 72 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 7/71 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + R+ LT + ++G + +R R P+ ++++ Sbjct: 1 MDM--RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERG-----RRNPTVITLYE 53 Query: 61 ILAATNETICQ 71 + A + + Sbjct: 54 LAQALGVSHVE 64 >gi|168184062|ref|ZP_02618726.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|237794132|ref|YP_002861684.1| HTH domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182672824|gb|EDT84785.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|229261321|gb|ACQ52354.1| HTH domain protein [Clostridium botulinum Ba4 str. 657] Length = 381 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 43/157 (27%), Gaps = 12/157 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + +T LA G+ S +K + +P + ++ N Sbjct: 5 NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLS-----YPDILFLPELATYFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ +LL + KK F + ++ Sbjct: 60 SMDELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEVMEQCNKLIKKYYSCFPFLLSIIQL 119 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 Y+ ++ ++ + IL+ + Sbjct: 120 LLNYSN-------LIKNDAIKKEIFQQCILLSRRIKE 149 >gi|119512426|ref|ZP_01631508.1| hypothetical protein N9414_13365 [Nodularia spumigena CCY9414] gi|119462892|gb|EAW43847.1| hypothetical protein N9414_13365 [Nodularia spumigena CCY9414] Length = 68 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%) Query: 1 MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M +I + R + LA GL T ++ +R R S Sbjct: 5 MQPSKLDQILGLELQRHRTEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLS 59 >gi|19553021|ref|NP_601023.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62390698|ref|YP_226100.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21324589|dbj|BAB99213.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41326036|emb|CAF20199.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 127 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 3/55 (5%), Positives = 24/55 (43%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 S ++ +++ + ++ ++ +A + G+ ++ ++ + + ++ Sbjct: 26 SQREFLDSLVALRKKAGISQDEVANRMGVSQSAISQFEHYDANPTLSTIRRYALA 80 >gi|332663828|ref|YP_004446616.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100] gi|332332642|gb|AEE49743.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter hydrossis DSM 1100] Length = 245 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 8/106 (7%) Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179 E N + SM P+ GD++I ++ +++ G Sbjct: 133 EDIDYFNIPGLAGGGLVAFPIKGNSMEPIIANGDVVICREIQSMSEVRDNKIYSVKHNGS 192 Query: 180 IVAKVLISRRGR-----SIDLMSLNC-CYPVDTVEMSDIEWIARIL 219 I K + R + L+S N + ++++ + +++ Sbjct: 193 IWVKHVQKITDRNGRVTRLKLISANHLEHDPFVEDVNEHTRLYQVI 238 >gi|326388802|ref|ZP_08210386.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206712|gb|EGD57545.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] Length = 395 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 6/49 (12%), Positives = 18/49 (36%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 M+ + + + + ++ + LA G+ S +K + + Sbjct: 1 MSIIAQGFVGARLTEARKARGISATDLADMVGVSVQSISKYENDRQSPK 49 >gi|323463235|gb|ADX75388.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 190 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 7/129 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + L+ LA K + + + + +P + + + N Sbjct: 2 DVGNQIRIYRKERQLSQMALAEKIDVSTQTISNWENERT-----YPDLYHLIVLSSLFNV 56 Query: 68 TICQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 ++ Q D+ L V + W + +P I Sbjct: 57 SLDQLVKGDVVEMKNIIDHYNMDRYGKLMLAFMLIAVISVGPVLKFSDGWYGLFIPFIFW 116 Query: 126 PHNGIYAIQ 134 + YAI+ Sbjct: 117 AFSMYYAIK 125 >gi|322376311|ref|ZP_08050804.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321282118|gb|EFX59125.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 158 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 117 DLSDLIHTNIYLVETFDE 134 >gi|319947404|ref|ZP_08021636.1| DNA-binding protein [Streptococcus australis ATCC 700641] gi|319746344|gb|EFV98605.1| DNA-binding protein [Streptococcus australis ATCC 700641] Length = 197 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + I + NL+ LA + S + +R + + K+ Sbjct: 2 QVGKQIQHYRKEKNLSQDELAEIIFVSRQSISNWERGAT--YPDIQNLLLLSKVFE 55 >gi|317473438|ref|ZP_07932732.1| hypothetical protein HMPREF1011_03082 [Anaerostipes sp. 3_2_56FAA] gi|316899088|gb|EFV21108.1| hypothetical protein HMPREF1011_03082 [Anaerostipes sp. 3_2_56FAA] Length = 356 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KI E I + + T LA G+ + NK ++ ++ ++L Sbjct: 2 KINEMIRELRIKKGFTQEQLASLLGVSAPAVNKWEKAAS--YPDITLLPALARVLD 55 >gi|291539786|emb|CBL12897.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 223 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 14/34 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 I + I + + T LA + G+ + + + Sbjct: 6 IGKNIKELRMKLGYTQEQLANELGVTRQTLSNWE 39 >gi|326203818|ref|ZP_08193680.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985916|gb|EGD46750.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 67 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + NLT +A+ AG+D T+ NK + G R PS ++ I + Sbjct: 5 LKDLRIAKNLTQQKVAKLAGVDVTTINKIELGG-----RRPSPDTAKAIAEVLGFEWTKF 59 Query: 73 LDLPF 77 D Sbjct: 60 YDEEQ 64 >gi|152998873|ref|YP_001364554.1| XRE family transcriptional regulator [Shewanella baltica OS185] gi|151363491|gb|ABS06491.1| transcriptional regulator, XRE family [Shewanella baltica OS185] Length = 191 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 13/164 (7%), Positives = 46/164 (28%), Gaps = 15/164 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + A++ G+ + +R P+ +++KI + N + Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ T +K E+ G + + + + Sbjct: 63 LSTFLEPTPQSQGTVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171 + + ++++ + G+ + Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157 >gi|14520583|ref|NP_126058.1| hypothetical protein PAB2104 [Pyrococcus abyssi GE5] gi|24418829|sp|Q9V1R0|Y367_PYRAB RecName: Full=Putative HTH-type transcriptional regulatory protein PYRAB03670 gi|5457799|emb|CAB49289.1| Hypothetical protein, containing helix-turn-helix motif [Pyrococcus abyssi GE5] Length = 316 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 16/37 (43%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + + + E+H + S LA G+ S + ++ Sbjct: 128 GKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDS 164 >gi|325689390|gb|EGD31395.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 205 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGVEPVVQKEEEQSIKHRRI 82 >gi|325688449|gb|EGD30467.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 205 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I + + ++ GLA + G+ + +K + P + I + Sbjct: 2 NLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 T LL + E++ + + Sbjct: 57 TTDYLLKGVEPVVQKEEEQSIKHRRI 82 >gi|295102948|emb|CBL00492.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 112 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + EA+ + +T +A G+ + +K + + PST ++F + Sbjct: 46 RKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSD-----PSTSNLFALAKLY 100 Query: 66 NETICQ 71 ++ + Sbjct: 101 GVSVEE 106 >gi|294084784|ref|YP_003551542.1| transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664357|gb|ADE39458.1| transcriptional regulator, putative [Candidatus Puniceispirillum marinum IMCC1322] Length = 468 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ T + +A K G+ P N ++ R S + + + N Sbjct: 6 IGPRLRQLRRDSGQTQAQMAEKLGISPAYVNLLEKNQ-----RSLSVQVLMALSDEYNVD 60 Query: 69 ICQ 71 Sbjct: 61 WRD 63 >gi|291548990|emb|CBL25252.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 112 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + EA+ + +T +A G+ + +K + + PST ++F + Sbjct: 46 RKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSD-----PSTSNLFALAKLY 100 Query: 66 NETICQ 71 ++ + Sbjct: 101 GVSVEE 106 >gi|284051431|ref|ZP_06381641.1| XRE family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 134 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 29/104 (27%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + + LA G+D T +K + + + + + L E + L Sbjct: 30 IRQARKDRGYSQRELAGLLGVDFTYLSKLENDRADYAPKEEVIRGLARNLGIDEEELIFL 89 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 K+ F F VF + + Sbjct: 90 AGRIPHHYENFLKENNREITALFRRLQENPNFAKQVFDAASGKD 133 >gi|256827543|ref|YP_003151502.1| putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583686|gb|ACU94820.1| predicted transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 197 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 17/148 (11%), Positives = 43/148 (29%), Gaps = 10/148 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + L+ +A K + + +K + P T+++ + Sbjct: 4 EIAKRLYEYRRAAGLSQEQVAAKIDVSRQAVSKWECAEA-----SPDTDNLIALALLYGI 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS-- 125 T+ +LL K + + + +T E + Sbjct: 59 TVDELLFADPEKAIGEAPVSKAAGVETAADNAAQSEPAED--AAEQGEDTAAQSENAAVQ 116 Query: 126 -PHNGIYAIQTQDTRHKTQDTSMLPLYR 152 + +Y+ + + T + S R Sbjct: 117 GEGDTVYSDEEEQTTWQQSGDSENDYVR 144 >gi|294813286|ref|ZP_06771929.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294325885|gb|EFG07528.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 303 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + + E+ +T AGL + ++ +R +G RW E + + Sbjct: 27 QLGFRLLALREQRGMTAEHAGDLAGLSKATVSRYER--AKGNVRWNHVEMLCRA 78 >gi|221065656|ref|ZP_03541761.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|264679787|ref|YP_003279696.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|220710679|gb|EED66047.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|262210302|gb|ACY34400.1| transcriptional regulator, XRE family with [Comamonas testosteroni CNB-2] Length = 191 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/156 (8%), Positives = 42/156 (26%), Gaps = 10/156 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + +T LA+ +G+ P + ++ +R + R + I + Sbjct: 17 GAAVRARRAQLGITLDQLAQASGVSPGALSRVERGLLATSLR-----NAMAIAQGLGCEL 71 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +L+ + + L + + G P + Sbjct: 72 GELVQSA----PSAQITRAGENLRFVDEASGVERLALASPSAGVNLVHYRFPPHAVSSHF 127 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + ++ + ++L++ Sbjct: 128 AAHRAGTREVFHVL-EGSIEVFTAQEQVLLHAGDTA 162 >gi|300724595|ref|YP_003713920.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] gi|22094605|gb|AAM91936.1|AF525420_7 putative repressor of flagellae [Xenorhabdus nematophila] gi|297631137|emb|CBJ91828.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] Length = 91 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +T + LA K G+ ++ +R + S E + I A N Sbjct: 7 VGKRIQIKRKETGVTAAELADKIGVSHQQLSRYERGTNK-----ISLEHLVAISIALNTP 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 L+ F+ + + Sbjct: 62 ADWFLEDCFTPPKVQMNNQYACVAETI 88 >gi|21218919|ref|NP_624698.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|6066657|emb|CAB58317.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 200 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 11/146 (7%) Query: 1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M + + + + I + + LA +A L +S ++ + R + Sbjct: 1 MLLMTQEDGDLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENG-----RRRLA 55 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + A + T+ QL++ D T+ + L+ +P G G T Sbjct: 56 LDQLVTLARALDTTLDQLVETADEDVITSPMIDSAHGLMRWPVKGDPGMTVVRQRMTQPP 115 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140 + + Sbjct: 116 PENPARMRAHPGREWLVVLSGTAVLM 141 >gi|13476145|ref|NP_107715.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14026905|dbj|BAB53501.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 227 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WPSTESI 58 ++ + + L+ + LA KAG+ + ++ +R R + WP ++ Sbjct: 43 RVGRRVRALRLERRLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAAAL 95 >gi|323934035|gb|EGB30492.1| helix-turn-helix protein [Escherichia coli E1520] Length = 154 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + L+ A + G + ++ +R G S ++I Sbjct: 1 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55 Query: 61 ILAATNETICQ 71 + A + Q Sbjct: 56 LANALSVEPWQ 66 >gi|320528225|ref|ZP_08029389.1| toxin-antitoxin system, antitoxin component, Xre family [Solobacterium moorei F0204] gi|320131398|gb|EFW23964.1| toxin-antitoxin system, antitoxin component, Xre family [Solobacterium moorei F0204] Length = 86 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ I + + H L+ LA G + + S +KI + Sbjct: 17 KVKNRIKELRKEHKLSQGELADLVGTTRQTITSIEVGKYTA-----SLPLAYKIAKQFSL 71 Query: 68 TICQLLDLPF 77 +I ++ D Sbjct: 72 SIEEVFDFSE 81 >gi|304411730|ref|ZP_07393342.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|307306218|ref|ZP_07585963.1| helix-turn-helix domain protein [Shewanella baltica BA175] gi|304349918|gb|EFM14324.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|306911091|gb|EFN41518.1| helix-turn-helix domain protein [Shewanella baltica BA175] Length = 191 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 15/164 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + A++ G+ + +R P+ +++KI + N + Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ +K E+ G + + + + Sbjct: 63 LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171 + + ++++ + G+ + Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157 >gi|325674671|ref|ZP_08154358.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554257|gb|EGD23932.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 85 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 16/39 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I I R +T + LA ++G+ T+ + + Sbjct: 14 IGNEIRAARARRGITQNELADQSGISHTTIVRLESGKRT 52 >gi|295135558|ref|YP_003586234.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294983573|gb|ADF54038.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 140 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T SH I I R+ E + LA + G+ S + ++ ++ KI Sbjct: 17 TKTSH--IGRKISRIRELRGMKQEALAAELGISQQSVSNLEKSENVDE------GTLKKI 68 Query: 62 LAATNETICQLLDLPF 77 N + + Sbjct: 69 SEVLNVSPEAIRHFTE 84 >gi|291531495|emb|CBK97080.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 301 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ N+T LA + + +K + +P T+ + + T Sbjct: 3 LGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTA-----FPETDKLITLSDYFGCT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 + +L+ + T + + + F + G Sbjct: 58 LDELIKGSAEENFTEDAAGYDKEMNSFTRAICLG 91 >gi|253577297|ref|ZP_04854615.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843301|gb|EES71331.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 117 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + + +LT LA + + + +R R S E++ K+ Sbjct: 4 EALGKRLRQERHKMHLTQEKLAERIEVSDAYIGQIERGE-----RSLSLETLVKLANQLG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 T+ LL + + ++ Sbjct: 59 VTVDYLLHDSIEISDDHFLDQIQQIVMNRS 88 >gi|269838117|ref|YP_003320345.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787380|gb|ACZ39523.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 68 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ T L R+ G+ + N + + PS FK+ TI Sbjct: 3 NRVREARQKQGWTQDDLGRRVGVSRQTINAIENGRYD-----PSLPLAFKLARVFETTIE 57 Query: 71 QLLDLPF 77 L Sbjct: 58 DLFFPEE 64 >gi|258651865|ref|YP_003201021.1| hypothetical protein Namu_1642 [Nakamurella multipartita DSM 44233] gi|258555090|gb|ACV78032.1| hypothetical protein Namu_1642 [Nakamurella multipartita DSM 44233] Length = 444 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 21/149 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI---- 58 + ++ +A R + S +AR G D + R P+ + Sbjct: 1 MLTQEEDVDA--HALRRRGWSISAIARHLGKDRKTIRAYLNGERTAGVRSPAGPDVFEPF 58 Query: 59 -----FKILAATNETIC----------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 +++ + P + + + P G Sbjct: 59 VTYCRERLVEDPHLWATALYDELLQLGYDRSYPRLTHNLRTRGLRPVCHACRPAGGRPAA 118 Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 +W+ + +P+ +G A Sbjct: 119 VIDHPPAEETQWDWLELPDPPRSWDGYGA 147 >gi|255102244|ref|ZP_05331221.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] Length = 141 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 5/82 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + + + T LA K + S K + P S K+ N Sbjct: 2 INENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESI-----PDIGSCIKLAKLYNVK 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90 + L++ + + Sbjct: 57 LDDLVNHSEEKTGIIVPPKGKF 78 >gi|217971536|ref|YP_002356287.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217496671|gb|ACK44864.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 191 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 15/164 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + A++ G+ + +R P+ +++KI + N + Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ +K E+ G + + + + Sbjct: 63 LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171 + + ++++ + G+ + Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157 >gi|220910730|ref|YP_002486040.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] gi|219867502|gb|ACL47839.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 825 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 10/133 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ- 71 + + ER LT S +A GL ++ ++ STE + + A I Sbjct: 5 LRGVRERAGLTQSQIAAMLGLSQAQVSRYEQD-----PGTISTELLIRWAQALGTDIPTL 59 Query: 72 ----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L L + K + L + F + + + + P+ Sbjct: 60 LANALPSLTPLEVGDPYAKLRHDLNLLEQYISAAHFSELDTAKSHLTPDQLPTPDNLRLQ 119 Query: 128 NGIYAIQTQDTRH 140 Y + Sbjct: 120 IKRYRQKPNLVLV 132 >gi|189349935|ref|YP_001945563.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189333957|dbj|BAG43027.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 205 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 13/159 (8%), Positives = 40/159 (25%), Gaps = 22/159 (13%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA + G+ + + +R P+ + K+ A Sbjct: 15 NERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAA-----SPTAVVLDKLAAGL 69 Query: 66 NETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ ++ + +P+ + V P Sbjct: 70 GISLAGLFGGDDGAPAQPLVRRAQQAEWRDPASGYARRNLSPPGWPSPLQLVEVDFPPGA 129 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 + + + + Sbjct: 130 ----------------RVAYDTGAREIAWHQQIWVVRGR 152 >gi|114569125|ref|YP_755805.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339587|gb|ABI64867.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 164 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 6/81 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + LA +GL + +++R PS E++ + A+ + + QL Sbjct: 3 LKSLRLEKGWSQEQLATISGLSDRTIQRAERGET------PSLETVRALAASFDLSSAQL 56 Query: 73 LDLPFSDGRTTEKKEKEIPLL 93 DL + T + + + Sbjct: 57 RDLIETPEETADMAANDTTPI 77 >gi|160873452|ref|YP_001552768.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160858974|gb|ABX47508.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|315265681|gb|ADT92534.1| helix-turn-helix domain protein [Shewanella baltica OS678] Length = 191 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 15/164 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + A++ G+ + +R P+ +++KI + N + Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L+ +K E+ G + + + + Sbjct: 63 LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171 + + ++++ + G+ + Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157 >gi|19908850|gb|AAM03020.1|AF472611_1 regulatory protein C.BcnI [Brevibacillus centrosporus] Length = 74 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E+ LT LA +AGL T + +R R S +I KI A + I Sbjct: 9 GRKVRIIREQKGLTQEKLAEEAGLHRTYISSLERGE-----RSISLNNIEKIARALDVEI 63 Query: 70 CQLLDLPF 77 QL Sbjct: 64 YQLFIFRE 71 >gi|146296429|ref|YP_001180200.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410005|gb|ABP67009.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I + + ++ LT +A G++ + + R S ++ ++ Sbjct: 8 KRIGQKLQEARKKAGLTQEQVADYLGINKVQLSYYENGV-----REISIGTLQQLADLYG 62 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 T+ D S + L Sbjct: 63 YTLNYFFDDEKSTDPAVSFSFRGEELE 89 >gi|300786099|ref|YP_003766390.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795613|gb|ADJ45988.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 197 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 7/133 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ + +T + L+ G+ ++ ++ + R PS E + I A Sbjct: 11 EVGPRLKRVRTQRRVTLADLSAATGISKSTLSRLESGQ-----RKPSLELLLPIAQAHQV 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L+ P + IP P + + PE P Sbjct: 66 PLDELVGAPEVGDPRVRLTARRIPRHNGAAMTVLPLTRQPGAP--QAFKMILEPETGEPD 123 Query: 128 NGIYAIQTQDTRH 140 ++ Sbjct: 124 PQVHEGYEWLYVL 136 >gi|255308106|ref|ZP_05352277.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 141 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 5/82 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + + + T LA K + S K + P S K+ N Sbjct: 2 INENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESI-----PDIGSCIKLAKLYNVK 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90 + L++ + + Sbjct: 57 LDDLVNHSEEKTGIIVPPKGKF 78 >gi|212711620|ref|ZP_03319748.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] gi|212685722|gb|EEB45250.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] Length = 107 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + K + I + + N++ L++ G+ ++ + E R + SI + Sbjct: 2 MKKNTSKIVGARIRTLRKDRNMSIQQLSKLLGISQQHQSRHELG--EMRIHVDTLYSISE 59 Query: 61 ILA 63 IL Sbjct: 60 ILE 62 >gi|168186101|ref|ZP_02620736.1| signal peptidase I [Clostridium botulinum C str. Eklund] gi|169296109|gb|EDS78242.1| signal peptidase I [Clostridium botulinum C str. Eklund] Length = 176 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 138 TRHKTQDTSMLPLYRKGDIL---ILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSI 193 + + SM P + GD + ++++ +++ GD ++ + + + K LI G I Sbjct: 30 FQVRVPSMSMYPTIKPGDRIMVSVVHNQKKLHHGDIIVFNSKEKNESMIKRLIGLPGDEI 89 Query: 194 DL 195 ++ Sbjct: 90 NI 91 >gi|170729064|ref|YP_001763090.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814411|gb|ACA88995.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 77 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 6/55 (10%), Positives = 18/55 (32%), Gaps = 2/55 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + T + LA K + + N ++ + P + ++ Sbjct: 3 NRLKVLRAEQDWTQADLAEKLDVSRQTVNAIEKGKYD--PSLPLAFKLARLFDTP 55 >gi|116515960|ref|YP_816408.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148988506|ref|ZP_01819953.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|168491942|ref|ZP_02716085.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|225858871|ref|YP_002740381.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|289167945|ref|YP_003446214.1| transcriptional regulator [Streptococcus mitis B6] gi|116076536|gb|ABJ54256.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147926187|gb|EDK77261.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|183217352|gb|ACC59271.1| antitoxin PezA [Streptococcus pneumoniae] gi|183573821|gb|EDT94349.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|213031122|emb|CAR31459.1| hypothetical protein [Streptococcus pneumoniae] gi|225721666|gb|ACO17520.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|288907512|emb|CBJ22349.1| transcriptional regulator [Streptococcus mitis B6] gi|319412015|emb|CBY91948.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 117 DLSDLIHTNIYLVETFDE 134 >gi|146298449|ref|YP_001193040.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152867|gb|ABQ03721.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 137 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 6/77 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M++ K I I R+ E ++ LA G + S + + E + K Sbjct: 1 MSTVKPKHIGRNISRIRELRDMKQEALAIAIGTNQQSISIIEGSESVDE------EKLKK 54 Query: 61 ILAATNETICQLLDLPF 77 I A + + + Sbjct: 55 IAEALGVSAETIKNFSE 71 >gi|329894642|ref|ZP_08270447.1| Transcriptional regulator [gamma proteobacterium IMCC3088] gi|328922898|gb|EGG30227.1| Transcriptional regulator [gamma proteobacterium IMCC3088] Length = 68 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 13/38 (34%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + LT LAR G+ + N + + Sbjct: 3 NNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDP 40 >gi|325678585|ref|ZP_08158195.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109635|gb|EGC03841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 220 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 33/119 (27%), Gaps = 13/119 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I ++ + LA KA + + + + +P S+ + Sbjct: 25 ELCKTIRKLRTEKGWSQEMLAEKAYVSRQTVSNWENEKC-----YPDVHSLLILSDLFGV 79 Query: 68 TICQLLDLPFSDGRTTEKK--------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 ++ +L+ + T + + +L G V Sbjct: 80 SLDELIKGDVETMKKTVNEKDAKTLKTSQWCGVLGLVAMMLTTAIFENCGEVGRVIGAV 138 >gi|313638160|gb|EFS03416.1| signal peptidase I [Listeria seeligeri FSL S4-171] Length = 189 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSIDL 195 K + TSM+P Y+ GD + + + D ++ TG+ K +I G I+ Sbjct: 43 VKVEGTSMVPTYQDGDRIFIEKITDPDRFDIIVFDEPPMIGTGEHFIKRVIGMPGDKIEF 102 Query: 196 M 196 Sbjct: 103 K 103 >gi|307324784|ref|ZP_07603990.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889666|gb|EFN20646.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 187 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + R+ LT + LA ++G+ + ++ +R P+ E++F + A Sbjct: 11 NLQRLRGERGLTLAALAARSGVAKGTISELERGRGN-----PTIETLFALAYALE 60 >gi|307269924|ref|ZP_07551250.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|306513714|gb|EFM82320.1| helix-turn-helix protein [Enterococcus faecalis TX4248] Length = 174 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 1 MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58 M +H I+ + + E NLT + LA G + T+ +K + + R + + Sbjct: 1 MKD-THGTIFAQRLKNLRETKNLTQTELAEMLGYKNYTTVSKWESG--DSLPRGKELKLL 57 Query: 59 FKILA 63 +I Sbjct: 58 AEIFN 62 >gi|297565618|ref|YP_003684590.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850067|gb|ADH63082.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 73 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + E ++ LAR A + + + + P +++ ++ A + + Sbjct: 2 IGERLKALREARQMSQYDLARAAHVSQGLIWQIE-----ANRKNPGLKTLLRLANALSVS 56 Query: 69 ICQ 71 Q Sbjct: 57 PDQ 59 >gi|291531478|emb|CBK97063.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 380 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E + + + LT LA G+ + ++ + +P + I++ Sbjct: 15 KLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGTT-----YPDITLLPTIVSYFEI 69 Query: 68 TICQLLDLPFSDGRTT 83 T+ +L+ + Sbjct: 70 TLDELMGMENWRSEEQ 85 >gi|257080647|ref|ZP_05575008.1| predicted protein [Enterococcus faecalis E1Sol] gi|256988677|gb|EEU75979.1| predicted protein [Enterococcus faecalis E1Sol] Length = 177 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 1 MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58 M +H I+ + + E NLT + LA G + T+ +K + + R + + Sbjct: 4 MKD-THGTIFAQRLKNLRETKNLTQTELAEMLGYKNYTTVSKWESG--DSLPRGKELKLL 60 Query: 59 FKILA 63 +I Sbjct: 61 AEIFN 65 >gi|187777853|ref|ZP_02994326.1| hypothetical protein CLOSPO_01445 [Clostridium sporogenes ATCC 15579] gi|187774781|gb|EDU38583.1| hypothetical protein CLOSPO_01445 [Clostridium sporogenes ATCC 15579] Length = 140 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 4/89 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + L+ LA + + T ++ + G R PS ++ + + Sbjct: 4 GEFFKNIRTEKGLSQRQLAELSHISNTEISRIE----SGERRNPSPNTLKSLAPHLGISY 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 +L+ + E ++ + Sbjct: 60 GELMIKAGYIDESIEHEKYTEHIFRKADG 88 >gi|188583258|ref|YP_001926703.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346756|gb|ACB82168.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 110 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 16/39 (41%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 A+ R+ LT + LA+ G + +K + R Sbjct: 19 ALGRVRRERGLTQAALAKILGASQATISKLLAGQHKPRP 57 >gi|149917149|ref|ZP_01905649.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149822065|gb|EDM81458.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 128 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 5/81 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + LT LARKAGL + + + G PS ++ ++ Sbjct: 11 RFGRHVRSLRKTRGLTQEALARKAGLSGDTIRRLE-----GGTFSPSLTTLVRLSRGLEL 65 Query: 68 TICQLLDLPFSDGRTTEKKEK 88 + +L E++ Sbjct: 66 RLSTILASYEIGMLPVERELA 86 >gi|118444932|ref|YP_878880.1| signal peptidase I [Clostridium novyi NT] gi|118135388|gb|ABK62432.1| signal peptidase I [Clostridium novyi NT] Length = 176 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 137 DTRHKTQDTSMLPLYRKGDILIL---NSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRS 192 + + SM P + GD +++ +S ++ GD ++ + + + K LI G Sbjct: 29 LFQVRVPSMSMYPTIKPGDRIMVSILHSQKSLHRGDIVVFNSKEENEYMIKRLIGLPGDD 88 Query: 193 IDL 195 I++ Sbjct: 89 INI 91 >gi|121609979|ref|YP_997786.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554619|gb|ABM58768.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 208 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 18/143 (12%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + AI + R LT + ++ +AG+ +K + +++ +I Sbjct: 21 EESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMA-----GLDTLARIARTL 75 Query: 66 NETI------------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + K + G G F Sbjct: 76 GVAMSALFGKYDASAAMAQHVKRGAGMEVVRRGTKSGHSYHLLAYGQGPVKWFEPFLITM 135 Query: 114 KWNTVGVP-EIRSPHNGIYAIQT 135 ++ P +Y ++ Sbjct: 136 ADDSQRYPSFQHPGTEFLYMLEG 158 >gi|115523415|ref|YP_780326.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517362|gb|ABJ05346.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 480 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + R+ ++ L+ + +A G+ P+ N +R R + + + ++ + Sbjct: 11 VGPRFRRLRQQMGLSQTQMAEGLGISPSYINLIERNQ-----RPVTAQILLRLAENYDLD 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 + L + PL Sbjct: 66 LRDLATADEDRFFAELNEIFSDPL 89 >gi|328958082|ref|YP_004375468.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328674406|gb|AEB30452.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 63 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I+++ + LT + LA+ + + N + + + S+ KIL Sbjct: 5 IEQLRKDKGLTQADLAKACNVTRQTVNAIENNKYDPTLQLAF--SLSKILN 53 >gi|332654519|ref|ZP_08420262.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516483|gb|EGJ46089.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 145 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 11/112 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I+E + + + L L R+ GL + + + + P+ ES+ K+ N T Sbjct: 3 IFERVHELIKEQGLNVKQLERECGLANATIRRWE-------TQTPNIESVRKVAHRLNVT 55 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +D + G + + + P K + Sbjct: 56 ----IDYLVNGGSPNAPAAPSCDGVPLSSMEADLVAMFRLLPEEAKKEIFDL 103 >gi|300940028|ref|ZP_07154650.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300455126|gb|EFK18619.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 118 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I E + + ++ L A + G+ ++ + P E + K+ N Sbjct: 3 KDIGERVISVRKKAGLNQREFAARLGISNGGISQIENGKA-----MPGGEFLLKMHQEFN 57 Query: 67 ETICQ 71 + Sbjct: 58 VDVNW 62 >gi|299532071|ref|ZP_07045466.1| transcriptional regulator, XRE family with [Comamonas testosteroni S44] gi|298719986|gb|EFI60948.1| transcriptional regulator, XRE family with [Comamonas testosteroni S44] Length = 191 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 14/156 (8%), Positives = 42/156 (26%), Gaps = 10/156 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + +T LA+ +G+ P + ++ +R + R + I + Sbjct: 17 GAAVRARRAQLGITLDQLAQASGVSPGALSRVERGLLATSLR-----NAMAIAQGLGCEL 71 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +L+ + + L + + G P + Sbjct: 72 GELVQSA----PSAQITRAGENLRFVDEASGVERLALASPSAGVNLVHYHFPPHAVSSHF 127 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + ++ + ++L++ Sbjct: 128 AAHRAGTREVFHVL-EGSIEVFTAQEQVLLHAGDTA 162 >gi|260434925|ref|ZP_05788895.1| nickel-type superoxide dismutase maturation protease [Synechococcus sp. WH 8109] gi|260412799|gb|EEX06095.1| nickel-type superoxide dismutase maturation protease [Synechococcus sp. WH 8109] Length = 110 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 12/95 (12%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGD--IVAKVLISRR 189 + + + SM P GD +++ + + G ++ + K L Sbjct: 6 GRRLLLRIEGRSMQPTLEPGDRVLVRRLGRKLAPSLGSVVVTWHPQRSKLRLIKRLSRWD 65 Query: 190 GRSIDLMSLNCCYPVDTVEMSDI-------EWIAR 217 + L+ N D+ ++ + E + R Sbjct: 66 STGLWLLGDNPTESTDSRQLGAVPTNLLIGEVVGR 100 >gi|260463544|ref|ZP_05811743.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259030635|gb|EEW31912.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 482 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I R+ LT + +A G+ P+ N +R R + + I K+ + Sbjct: 9 GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQ-----RPLTVQLILKLASVYKVDP 63 Query: 70 CQ 71 + Sbjct: 64 HE 65 >gi|229176555|ref|ZP_04303981.1| Transcription regulator [Bacillus cereus MM3] gi|228606911|gb|EEK64307.1| Transcription regulator [Bacillus cereus MM3] Length = 118 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 5/55 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + + + L K + + +K + + PS E KI N Sbjct: 8 RIKELRKERKWSQKELGEKVDVSESFVSKVESG-----KKQPSREVTAKIAEVFN 57 >gi|291457121|ref|ZP_06596511.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291380956|gb|EFE88474.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 356 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 6/124 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + NLT LA G+ + +K + +P + + I T+ Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNG 129 L+ S + + + S S + H Sbjct: 60 DLVLGDVSRPAASASAAGSSNVDSSAEAASPLAASSKTAGIIAPIAELAQDITGYDEHRR 119 Query: 130 IYAI 133 +A+ Sbjct: 120 RFAL 123 >gi|170731783|ref|YP_001763730.1| helix-turn-helix domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169815025|gb|ACA89608.1| helix-turn-helix domain protein [Burkholderia cenocepacia MC0-3] Length = 356 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 5/118 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +R LT LA K+G+ + + + G+ PS E++ + + Sbjct: 7 LAIARKRRQLTKKELAEKSGITAVTLTRLE----TGKTADPSMETLETLAQVLGYPVDFF 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHNG 129 + + T + + + + F +P P Sbjct: 63 FGQSYEELTTDAASFRSLSTMSAAQRDAALAAGQIAFSLAEWINERFDLPAPDLPDLR 120 >gi|17530573|ref|NP_511231.1| hypothetical protein R46_054 [IncN plasmid R46] gi|12002182|gb|AAG43218.1| unknown [IncN plasmid R46] Length = 120 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 11/74 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG---IEGRNRW------- 52 ++ + + R ++ S LA G+D + ++ +R +GR Sbjct: 1 MLTNDR-GRQVRRARLLRHMKQSHLAELMGVDQATVSRWERGTLALSDGRWSAVLQLLTG 59 Query: 53 PSTESIFKILAATN 66 PS S+ + A+ Sbjct: 60 PSDSSVRRCAEASG 73 >gi|88604161|ref|YP_504339.1| XRE family transcriptional regulator [Methanospirillum hungatei JF-1] gi|88189623|gb|ABD42620.1| transcriptional regulator, XRE family [Methanospirillum hungatei JF-1] Length = 70 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 5/74 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I R +T + LARKAG+ + ++ PS I N +I Sbjct: 2 YTRIKEFRVRQGITQADLARKAGVRRETIVFLEKGKYN-----PSLRLAHHIACILNTSI 56 Query: 70 CQLLDLPFSDGRTT 83 +L G Sbjct: 57 EELFFFDDETGPDE 70 >gi|55822658|ref|YP_141099.1| restriction-modification system regulatory protein [Streptococcus thermophilus CNRZ1066] gi|55738643|gb|AAV62284.1| restriction-modification system regulatory protein, putative [Streptococcus thermophilus CNRZ1066] Length = 75 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + ++ L+ A K G+D T + + R S ++I KI + + +I Sbjct: 7 GKRIKELRKQTGLSQEKFALKIGMDRTYYASIESG-----KRNVSLKNIEKIASGFDISI 61 Query: 70 CQ 71 Q Sbjct: 62 SQ 63 >gi|28379037|ref|NP_785929.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] gi|28271875|emb|CAD64780.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] Length = 188 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 15/38 (39%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 I + + L+ + LA K + S + ++ R Sbjct: 4 IKELRQYMGLSQAELAEKLNVTRQSISLYEKGQRVPRI 41 >gi|319653363|ref|ZP_08007463.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317394847|gb|EFV75585.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 107 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + ++ + ++ S LA +AG+ + + +R PS + + KI N Sbjct: 2 IGDRVKKLRQDKKMSLSELADQAGVAKSYLSSLERNLQT----NPSIQFLEKIAGVLNVP 57 Query: 69 ICQLLDLP 76 + L+ Sbjct: 58 VDHLIHEQ 65 >gi|310825707|ref|YP_003958064.1| transcriptional repressor [Eubacterium limosum KIST612] gi|308737441|gb|ADO35101.1| transcriptional repressor [Eubacterium limosum KIST612] Length = 116 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 2/72 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + I E +++ S L++K G+ P++ N+ E + + + K L Sbjct: 3 QTIGQRIRLALEINHMRQSDLSKKTGISPSAINQYISGNFE--PKQNNIYLLAKALNVNE 60 Query: 67 ETICQLLDLPFS 78 + Sbjct: 61 AWLMGYDVSIER 72 >gi|296156274|ref|ZP_06839113.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893780|gb|EFG73559.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 91 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 A+ R+ E + LA AGL+ + + +R + + + + Sbjct: 9 GAAVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASI--VTVDKLARAFQVP 62 >gi|254885026|ref|ZP_05257736.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319642730|ref|ZP_07997374.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A] gi|254837819|gb|EET18128.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317385665|gb|EFV66600.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A] Length = 100 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + I+ ++ N+T + LA K G + + ++ + E + Sbjct: 40 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPK 79 >gi|237711046|ref|ZP_04541527.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229454890|gb|EEO60611.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 77 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + I+ ++ N+T + LA K G + + ++ + E + Sbjct: 17 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPK 56 >gi|229015817|ref|ZP_04172793.1| Transcriptional regulator [Bacillus cereus AH1273] gi|229022024|ref|ZP_04178580.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228739280|gb|EEL89720.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228745476|gb|EEL95502.1| Transcriptional regulator [Bacillus cereus AH1273] Length = 217 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 6/92 (6%) Query: 1 MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M S++++ I ++ + L+ L +DP + ++ + P + + Sbjct: 1 MPKENSNERLSTLIKKLLKERALSMRQLGMLTNIDPATISRIMNG-----KQPPKQKHLQ 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 K L D + + K++ ++ Sbjct: 56 KFAECLQVPPQLLFDEMYPNSPHINKEKTDMY 87 >gi|227486486|ref|ZP_03916802.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235534|gb|EEI85549.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 77 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I++ + L+ L +K G+ TS NK + PS ++ I A Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTI-----PSLKTANDIANALG 53 >gi|170754766|ref|YP_001780468.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119978|gb|ACA43814.1| HTH domain protein [Clostridium botulinum B1 str. Okra] Length = 381 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 48/181 (26%), Gaps = 15/181 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I + I + +T LA G+ S +K + +P + + Sbjct: 1 MREL---NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLS-----YPDILLLPE 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + N ++ +LL + K F + ++ Sbjct: 53 LATYFNISVDELLGYSPQLTKEDIGKIYSKLSHEFAVKPFDEVMEQCNKLIKKYYSCFPF 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 Y+ ++ ++ + IL+ + + + T + Sbjct: 113 LLSIIQLLLNYSN-------LIKNDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 165 Query: 181 V 181 + Sbjct: 166 L 166 >gi|168204638|ref|ZP_02630643.1| cI2009 [Clostridium perfringens E str. JGS1987] gi|170663751|gb|EDT16434.1| cI2009 [Clostridium perfringens E str. JGS1987] Length = 78 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + + I R + + L++K+G+ + N + + PS +++K+ Sbjct: 12 TIQNVGTNIKRRRLKKGWSLKQLSKKSGVGIKTINDIELGINK-----PSKNTLYKLSRT 66 Query: 65 TNET 68 T Sbjct: 67 FGIT 70 >gi|153853196|ref|ZP_01994605.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814] gi|149753982|gb|EDM63913.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814] Length = 66 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I E++ ++ + LA+ G+ + + PS KI N T Sbjct: 2 IITNIKEFREQNKMSQTELAQLVGVRRETIGHLENGHYN-----PSLVLAAKIAKVFNVT 56 Query: 69 ICQLLDLPF 77 I + + Sbjct: 57 IEDMFIIID 65 >gi|66391801|ref|YP_238525.1| DNA binding protein [Streptococcus phage 2972] gi|168229317|ref|YP_001686838.1| orf44 [Streptococcus phage 858] gi|56718458|gb|AAW27964.1| DNA binding protein [Streptococcus phage 2972] gi|155241712|gb|ABT18032.1| orf44 [Streptococcus phage 858] Length = 170 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 32/135 (23%), Gaps = 7/135 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ LT LA K G+ + + R + K+ N +I Sbjct: 1 MNRLKELRKQKKLTIVELAEKIGVTKLTILNWEHGT-----REIKGSNAKKLAEYFNVSI 55 Query: 70 CQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 D + K + + G + + P + Sbjct: 56 PYLLGYDTDNTFSDLITKINHWADERNLKQADPKIQWMRITEEVGEIRDVLLKPTKFTDP 115 Query: 128 NGIYAIQTQDTRHKT 142 DT Sbjct: 116 QMALKDAIGDTLVTI 130 >gi|319746123|gb|EFV98396.1| prophage Sa05 protein [Streptococcus agalactiae ATCC 13813] Length = 164 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 15/41 (36%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + + + LT GLA G+ + + + ++ Sbjct: 1 MNRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKS 41 >gi|309778171|ref|ZP_07673106.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914080|gb|EFP59885.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 45 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 4/39 (10%), Positives = 16/39 (41%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + + R+ + ++ LA + + +K + + + Sbjct: 5 DNLYRIRKEKGMSQEELAALCDVSRQAISKWENGVSQTK 43 >gi|304385449|ref|ZP_07367794.1| transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328656|gb|EFL95877.1| transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 114 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ I + I ++ + LT LA K+ L ++ +R + S ++I I Sbjct: 1 MSANINIGKLIKQVRKESGLTQEELAEKSDLSVNFISRIERTDNQ----NISWKNIEAIA 56 Query: 63 AATNETICQLLDLPFSDGRT 82 A + +LL + + + Sbjct: 57 EALGLSTIELLQVNENRQQH 76 >gi|300787758|ref|YP_003768049.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797272|gb|ADJ47647.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 411 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 1/85 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R L+ + LA G +K +R + R R + + L T Sbjct: 10 IGERIAFYRRRRGLSQAVLADLVGRTEDWLSKIERGERDIR-RLDVLADLARALRVTLGD 68 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 + L + + L+ Sbjct: 69 LLGEPVLMEEQDKHDDVPAIRDALM 93 >gi|291551242|emb|CBL27504.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 255 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 6/51 (11%), Positives = 17/51 (33%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + ++ LA K + + ++ + + K+L Sbjct: 7 ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKL--LSKVLD 55 >gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 111 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 5/97 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I N+T L +G ++ ++ + + PS E++ K+ Sbjct: 1 MKKNTIGKRIAEARINLNITQEQLEELSGFSVSTISRFETGRTQ-----PSIENLIKLSK 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 N I L T + + + Sbjct: 56 VLNVGIDYFLYDLIPHNETIQSPTVKDAVTVLSQMNE 92 >gi|229590656|ref|YP_002872775.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|229362522|emb|CAY49429.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 193 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 5/88 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R L+ + LA++AG+ ++ ++ + PS E+++ + A + + Sbjct: 23 IKRERLAAGLSLTELAKRAGVAKSTLSQLESGIGN-----PSIETLWSLAMAMGLQVTRF 77 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + P R E + Sbjct: 78 FEQPQQPLRVIRANEGMTTYAETANYAA 105 >gi|210634365|ref|ZP_03298091.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] gi|210158844|gb|EEA89815.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] Length = 169 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + + + + + LA G+ + +K + G +GR + + +I Sbjct: 46 DRLLDLRRKAGYSQEQLADLLGVSRQAISKWE--GAQGRPEVDNVVKLSQI 94 >gi|206900818|ref|YP_002250397.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] gi|206739921|gb|ACI18979.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] Length = 105 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I ++HN+ LA K GL + + +R + PS +++ +I A N Sbjct: 2 NVGKRIRETRKKHNMKLEDLAEKTGLSLSYISLIERG-----LKNPSLKALERIAKAFN 55 >gi|254380659|ref|ZP_04996025.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194339570|gb|EDX20536.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 296 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 9/136 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I + LT + ++ G D T + P+ S+ +I A Sbjct: 21 DLGRRIAARRQELGLTREQVGKRCGADATYVAYLEEHAA-----APAIGSLARIADALGT 75 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T+ +L ++ L+ + G V PE + Sbjct: 76 TVAELTGATTGYPPGRGTALRDAELITLTDAERRRLLS----SHGVGRVAVLTPEGPAIF 131 Query: 128 NGIYAIQTQDTRHKTQ 143 Y + + +T Sbjct: 132 PVNYVVAGDEIAFRTS 147 >gi|187778336|ref|ZP_02994809.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] gi|187771961|gb|EDU35763.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] Length = 111 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E +T L + + + ++ E P+ +++ KI N + Sbjct: 21 GDRLKELREEKGMTQEQLGKLLNITKQAVYSYEKGDNE-----PTIDALVKIADIFNVS 74 >gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] Length = 169 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + + L+ LA K + + +K + P ++ + I A Sbjct: 4 ENIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSV-----PDSDMLISISEALETP 56 >gi|160893816|ref|ZP_02074599.1| hypothetical protein CLOL250_01370 [Clostridium sp. L2-50] gi|156864468|gb|EDO57899.1| hypothetical protein CLOL250_01370 [Clostridium sp. L2-50] Length = 97 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + ++ N+T + LA +G+ ++ N + G + P +++ KI T Sbjct: 24 IIYRITYLCKQQNITVNKLATLSGITQSTLNNLMQ----GNTKNPKLKTLHKIATGFGMT 79 Query: 69 ICQLLDLPFSD 79 + Q LD P + Sbjct: 80 LSQFLDFPEMN 90 >gi|149203629|ref|ZP_01880598.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142746|gb|EDM30788.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 436 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + S LA++AG+ P+ N + R +++ K+ A Sbjct: 7 IGTRIRERRVLNGMRQSDLAQRAGISPSYLNLIEHNH-----RRIGGKTLLKLAEALKVE 61 Query: 69 ICQLLDLPF 77 QL Sbjct: 62 PSQLTQGAE 70 >gi|310825751|ref|YP_003958108.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308737485|gb|ADO35145.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 147 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 5/85 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M HK I I + N++ LARK G+ PT + + S +S+ Sbjct: 29 MQELDHKAIGLRIRKQRTFLNMSRDQLARKIGITPTFLADIELGT-----KGFSLKSLNY 83 Query: 61 ILAATNETICQLLDLPFSDGRTTEK 85 + + +L P T Sbjct: 84 FCSTLKMSSDAILYGPREYMGTKYS 108 >gi|307710167|ref|ZP_07646611.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619147|gb|EFN98279.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 68 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R +L + LA+ AG+ + + +R PS KI NE Sbjct: 2 QLKNRLKELRARDSLNQTDLAKLAGVSRQTVSLLERDEYT-----PSVVIALKISHIFNE 56 Query: 68 T 68 T Sbjct: 57 T 57 >gi|317057326|ref|YP_004105793.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449595|gb|ADU23159.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 117 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + L+ LA G+ P+ +R +R S + I + Sbjct: 13 VGERIRSRRVKLGLSQEQLAELCGITPSYVGHIERA-----SRQLSLNTAISISTVLEIS 67 >gi|256545968|ref|ZP_05473323.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256398390|gb|EEU12012.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 166 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + NLT LA++ + + +K ++ E PS +++ K+ Sbjct: 2 IGQKIKNKRKELNLTQEYLAKELNISRQAVSKWEKEISE-----PSMDNLIKLSEIFGVD 56 Query: 69 ICQLLDLPF 77 I + Sbjct: 57 IGYFKNEKE 65 >gi|253573993|ref|ZP_04851335.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846470|gb|EES74476.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + I ++ N T LA A L + +R +R S E++ KI A Sbjct: 5 EIVGKRIREYRKQKNWTQEQLAEAASLHYSYIGGVERG-----DRNISLETLEKIAVAL 58 >gi|222081872|ref|YP_002541237.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726551|gb|ACM29640.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 174 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + HNL+ LA++AG+ ++ + + PS ++ +IL + + Sbjct: 2 RHLRVAHNLSQRELAKRAGVTNSTISLIESNSAN-----PSVGALKRILDGIPIGLAEFF 56 Query: 74 DLP 76 Sbjct: 57 AFE 59 >gi|221201363|ref|ZP_03574402.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] gi|221208843|ref|ZP_03581841.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221171299|gb|EEE03748.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221178631|gb|EEE11039.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] Length = 205 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/159 (8%), Positives = 40/159 (25%), Gaps = 22/159 (13%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA + G+ + + +R P+ + K+ A Sbjct: 15 NERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAA-----SPTAVVLDKLAAGL 69 Query: 66 NETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ ++ + +P+ + V P Sbjct: 70 GISLAGLFGGDDGAPAQPLVRRAQQAEWRDPASGYARRNLSPPGWPSPLQLVEVDFPPGG 129 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 + + + + Sbjct: 130 ----------------RVAYDTGAREIAWHQQIWVVRGR 152 >gi|210634335|ref|ZP_03298071.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] gi|210158862|gb|EEA89833.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] Length = 152 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 9/105 (8%), Positives = 26/105 (24%), Gaps = 4/105 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ LT LA + + + ++ + E I + L Sbjct: 4 LKDVLVQLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKL--IARELDVPVMR 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + + F + G Sbjct: 62 LLDMPEHYCQSCGMMFTVPDQHGHE--ADGTETEDFCRWCYDQGA 104 >gi|167626085|ref|YP_001676379.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167356107|gb|ABZ78720.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 69 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + T + LA K + + N ++ + PS FK+ Sbjct: 3 NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYD-----PSLPLAFKVARLFEMP 55 >gi|25027766|ref|NP_737820.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|23493049|dbj|BAC18020.1| putative transcription regulator [Corynebacterium efficiens YS-314] Length = 378 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%) Query: 1 MTS-FSHKKIW---------EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 M+ SH + W I+ R LT + LA + G++P + + +R G Sbjct: 1 MSMPTSHPRNWGVRPRFLNPHRIELARRRRGLTKTDLAVRLGVNPRTVSGYERSGAP 57 >gi|317508397|ref|ZP_07966068.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC BAA-974] gi|316253305|gb|EFV12704.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC BAA-974] Length = 86 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I E + + R T L +G+ ++ + + + P+ E + ++ A Sbjct: 11 IAEELKALRSRRGFTLDELELASGVSRSTIWRIENGKSD-----PNVEQMTRLSRALG 63 >gi|315920969|ref|ZP_07917209.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694844|gb|EFS31679.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 105 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 15/38 (39%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I EAI R E NLT L G+ +K + Sbjct: 37 IGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS 74 >gi|306821038|ref|ZP_07454657.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550979|gb|EFM38951.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 164 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + I ++ + A GLD T +R R S E+++KI A Sbjct: 4 ELVGQEIRKLRTSKGYSQEKFATVCGLDRTYVAAVERG-----KRNISIENLYKIANALE 58 Query: 67 ETICQLLDLPFSDGRT 82 T+ +L D +T Sbjct: 59 ITLSELFDFGNPIQKT 74 >gi|284048500|ref|YP_003398839.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] gi|283952721|gb|ADB47524.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] Length = 92 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I +I R + ++ LA + G+ +S + + P +++ K+L A Sbjct: 31 IVSSIIRRRQELGISQRTLAERCGIPQSSIARIETLKTT-----PKLDTLVKLLQAL 82 >gi|256396415|ref|YP_003117979.1| hypothetical protein Caci_7309 [Catenulispora acidiphila DSM 44928] gi|256362641|gb|ACU76138.1| protein of unknown function DUF955 [Catenulispora acidiphila DSM 44928] Length = 283 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 19/194 (9%), Positives = 47/194 (24%), Gaps = 17/194 (8%) Query: 8 KIWEAIDRMAERHNLTPSGL-ARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + I R + + L AR AG PT+ + + R + + ++ Sbjct: 7 EVGQRIRAARTRRGWSQAELAARLAGQPTPTAISYWESG-----RRSVGLDDLIELARVL 61 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 I +LL P + + P + Sbjct: 62 GLGISELLPDPREQRPVGALLRAVAEQVDAQQLAEQLEAFAKDA------EQRPRPSLLW 115 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 T + P G ++++ + ++ + Sbjct: 116 EVAPASPRDTAEALLIAAGVKQPPVRIEELVAGCGILIHPWDFEDVDGLMVNLESGPVVW 175 Query: 182 AKVLISRRGRSIDL 195 ++ + L Sbjct: 176 VNKTQAQTRQRFTL 189 >gi|239941378|ref|ZP_04693315.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239987839|ref|ZP_04708503.1| DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 149 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +A+ ++ + LAR+AG+ +K + G P + + + Sbjct: 37 DLGQAVYDRRTALGISQTELARRAGMTQPQVSKLELGGTV--PTVPLLARLARAME 90 >gi|229188228|ref|ZP_04315304.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1] gi|228595248|gb|EEK52992.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1] Length = 65 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + ++ LA + GL T ++ + + P+ + KI ++ Sbjct: 1 MNRIAELRKEKLISQEKLAEQVGLSRTYISEIENN-----KKQPNVKLAIKIAKVLGKS 54 >gi|255654408|ref|ZP_05399817.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296449131|ref|ZP_06890918.1| DNA-binding protein [Clostridium difficile NAP08] gi|296880891|ref|ZP_06904839.1| DNA-binding protein [Clostridium difficile NAP07] gi|296261950|gb|EFH08758.1| DNA-binding protein [Clostridium difficile NAP08] gi|296428178|gb|EFH14077.1| DNA-binding protein [Clostridium difficile NAP07] Length = 183 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 54/159 (33%), Gaps = 10/159 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ I E + ++ + +L+ +A+ +G+ + ++ ++ + P+ ++ K Sbjct: 1 MQSL-NEIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCEVN-----PTISTLKK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + L++ SD + K + G + F + ++ + Sbjct: 55 ITNGLKISFTSLMERQESDIELIQ---KSDVDHFIEDDGKYISYPIFPFDSKRRFEIFMI 111 Query: 121 PEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILI 158 + A + + D ++ Sbjct: 112 EIEEGGNLDSNAELPGTQEFITVFSGEVTIKINGEDYVV 150 >gi|218780458|ref|YP_002431776.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761842|gb|ACL04308.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 209 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 8/72 (11%) Query: 3 SFSHK------KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 +H + + I +T LA+ +G+ + + + + + Sbjct: 1 MSTHDLEDVLDTLAKNIVVARSALGITQGDLAKDSGISRATIAQLEAGEGDPKLST--LI 58 Query: 57 SIFKILAATNET 68 S+ K L +T+ Sbjct: 59 SLSKSLDSTHWH 70 >gi|168204476|ref|ZP_02630481.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] gi|170663962|gb|EDT16645.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] Length = 184 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 17/177 (9%), Positives = 52/177 (29%), Gaps = 11/177 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + NL+ S ++ G+ + +R P+ +++KI + Sbjct: 8 IGNRLKTIRNNRNLSLSEVSEITGVSKAMLGQIERGQSN-----PTVSTLWKIANGLKVS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +D D + +++ + F G + T+ + + + Sbjct: 63 FSMFIDENKEDLKVIYQRDITPIIEDDNKMKLYPIFPFDP-KEGFEVFTIELEPGCNHIS 121 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIVA 182 + ++ T+ + + + +L + + + V Sbjct: 122 KPHNDGVEEYIIVTEGEIKIEI--DTETFVLQKEHSIRFMANKNHVYKNTSKNKAVF 176 >gi|110004082|emb|CAK98421.1| conserved hypothetical transcriptional regulator transcription regulator protein [Spiroplasma citri] Length = 177 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 14/128 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + +++NLT LA + L ++ +R PS E++ IL Sbjct: 3 LGEKIKLLRQKNNLTIEELANRCELTKGFISQLERDIS-----SPSIETLESILEVLGTN 57 Query: 69 ICQLLDLP---------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + + + L+ + P G + Sbjct: 58 LADFFKQEKNRKFVYAAEEHYKVEQNNYRIEWLVPNAQVNELEPILIQIKPQGESERILP 117 Query: 120 VPEIRSPH 127 + Sbjct: 118 FEGQIFGY 125 >gi|25027261|ref|NP_737315.1| hypothetical protein CE0705 [Corynebacterium efficiens YS-314] gi|23492542|dbj|BAC17515.1| hypothetical protein [Corynebacterium efficiens YS-314] Length = 169 Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 1/116 (0%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNE 67 + + + + + LA + + + +R G+ P +++K+ A + Sbjct: 54 LGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDV 113 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 LL + E + +P FD + P + P Sbjct: 114 PPAALLPAVGEKPQGICVDESLPVDVRWPAPRDEVLFDVPLTPPEHPRRADRQPPR 169 >gi|313633470|gb|EFS00294.1| signal peptidase I [Listeria seeligeri FSL N1-067] Length = 189 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSIDL 195 K + TSM+P Y+ GD + + + D ++ TG+ K +I G I+ Sbjct: 43 VKVEGTSMVPTYQDGDRIFIEKITDPDRFDIIVFDEPPMIGTGEHFIKRVIGMPGDKIEF 102 Query: 196 M 196 Sbjct: 103 K 103 >gi|307705777|ref|ZP_07642622.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307620695|gb|EFN99786.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 68 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R +L + LA+ AG+ + + +R PS KI NE Sbjct: 2 QLKNRLKELRARDSLNQTDLAKLAGVSRQTVSLLERDEYT-----PSIIIALKISHIFNE 56 Query: 68 T 68 T Sbjct: 57 T 57 >gi|229101738|ref|ZP_04232455.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] gi|228681686|gb|EEL35846.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] Length = 149 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|222530497|ref|YP_002574379.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457344|gb|ACM61606.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 145 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 5/95 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ E T + LA AG++PTS +++R E S ++ +I A + L Sbjct: 15 IRKLREEKGWTINQLALYAGVNPTSIMRAERGESE-----LSLGNLLRIAKALKVDLNTL 69 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 ++ +++ P Sbjct: 70 VEESMDQIVLGDEELVPEEKDKTPDIYEIIRKAEN 104 >gi|168209872|ref|ZP_02635497.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] gi|170712005|gb|EDT24187.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] Length = 141 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 2/50 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + N++ LA++ + + +K + + + + KI Sbjct: 7 LKELRKEKNISQEQLAKELNISRQAISKWESG--KAYPDIDNLILLRKIF 54 >gi|94152474|ref|YP_581881.1| putative transcriptional regulator Cro/CI family [Cupriavidus metallidurans CH34] gi|93358844|gb|ABF12931.1| putative transcriptional regulator Cro/CI family [Cupriavidus metallidurans CH34] Length = 233 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 7/107 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 A+ R LT S +A++ GL +++++ + IE + + A ++ Sbjct: 5 NAMKRARRLARLTQSEIAKRLGLSQSTYHRWESGEIE-----VPEAKVISLSEALGVSVE 59 Query: 71 QLLDLPFSDGRTTEKK--EKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L P + + F + P + Sbjct: 60 YLRGQPEPFDIEGMDEQLPADRKNYGFAAIHFSTGCPPLLLPISDGE 106 >gi|322806814|emb|CBZ04383.1| DNA-binding protein [Clostridium botulinum H04402 065] Length = 92 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 5/84 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + E T L + + + + + IE PS ++ KI N ++ Sbjct: 3 GDRLKELREEKEFTQEELGKFLNVSRQTISGYESGAIE-----PSISNLVKIANIFNVSL 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLL 93 LL + +K LL Sbjct: 58 DYLLCRTKERYNLNLENKKNKELL 81 >gi|322386497|ref|ZP_08060124.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269416|gb|EFX52349.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 75 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 5/63 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I + + E +T LA G+ + + PS E KI Sbjct: 1 MAKESNIITNLKSVRESRGMTQQELADHIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AAT 65 Sbjct: 56 QVF 58 >gi|319892096|ref|YP_004148971.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] gi|317161792|gb|ADV05335.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] Length = 179 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + NLT L + L ++ + P+ E+ IL Sbjct: 2 EIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKT-----SPNMETFLNILEVLGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 + D K E+ Sbjct: 57 SPRDFFDDKQVAKVHYPKSEQLSYCE 82 >gi|303326493|ref|ZP_07356936.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp. 3_1_syn3] gi|302864409|gb|EFL87340.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp. 3_1_syn3] Length = 183 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 10/138 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + R+ L+ LA+ + ++PT+ ++ + P+ + KI A Sbjct: 7 IAENLQRICTERGLSLRQLAKLSDVNPTTLSQLAKGDGN-----PTINVLLKITTALKIP 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRSP 126 L+ + K + + + F+ + + V + Sbjct: 62 YTGLI---EEQKKEVTIVRKNERVPLIGENPTYQIFNYFPYSAQRNFEFFYVTLDPHSKS 118 Query: 127 HNGIYAIQTQDTRHKTQD 144 + + + Q+ Sbjct: 119 ESSGHTAKAQEYIFMISG 136 >gi|300857312|ref|YP_003782296.1| putative membrane-associated gene regulator [Clostridium ljungdahlii DSM 13528] gi|300437427|gb|ADK17194.1| putative membrane-associated gene regulator with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 344 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 5/80 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + I + + +NLT LA K + ++ +K +R +P I I A + Sbjct: 8 GKFIIKKRKENNLTQKELAEKLYVSESAVSKWERGIS-----YPDISLILSICDALKISE 62 Query: 70 CQLLDLPFSDGRTTEKKEKE 89 +L+ + +++ Sbjct: 63 HELITASEDLHQHEIERQAM 82 >gi|317130604|ref|YP_004096886.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475552|gb|ADU32155.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 70 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 5/36 (13%), Positives = 16/36 (44%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 + + + RH + + LA++ G+ + ++ Sbjct: 2 LRNRVKELRARHGFSQTELAQRVGVTRQTIGFIEKG 37 >gi|312114539|ref|YP_004012135.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219668|gb|ADP71036.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 206 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I ++ L+ + LA+K G+ + ++ + R + + A + Sbjct: 27 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGA-----RGLHLSKMEALAGALGVPVT 81 Query: 71 Q 71 + Sbjct: 82 E 82 >gi|282855783|ref|ZP_06265089.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] gi|282586415|gb|EFB91677.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] Length = 95 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 ++ + + + N+T LA G+ ++ + R ++ K Sbjct: 29 QVIKTLIEARRKKNVTQKQLAEMTGITQPDISRLENGRGNPSLRT--LNNLAK 79 >gi|257081755|ref|ZP_05576116.1| predicted protein [Enterococcus faecalis E1Sol] gi|256989785|gb|EEU77087.1| predicted protein [Enterococcus faecalis E1Sol] Length = 81 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 2/71 (2%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +T LA+K G+ + + R ++ KI A T+ + Sbjct: 12 IYDLRREKRMTQKELAKKTGITERTIINYEN--SIDALRNAKYSTVEKIATALGVTVDDI 69 Query: 73 LDLPFSDGRTT 83 S+ + Sbjct: 70 FLTSNSEKPKS 80 >gi|315497559|ref|YP_004086363.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315415571|gb|ADU12212.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 62 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + HNL+ + LA+K + + N + + PS FKI Sbjct: 3 NRLKVLRAEHNLSQADLAQKLDVSRQTVNAIETEKYD-----PSLPLAFKIADVF 52 >gi|226939045|ref|YP_002794116.1| hypothetical protein LHK_00111 [Laribacter hongkongensis HLHK9] gi|226713969|gb|ACO73107.1| HTH_XRE domain containing protein [Laribacter hongkongensis HLHK9] Length = 125 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK-RFGIEGRNRWPSTESIFK 60 +F H A+ + ++ L+ + LA K GL + + + + + + E + Sbjct: 5 PAFEHPDFPVALKTLRKQLGLSRTALAGKVGLSTAAIQRYEAQDASHIKPSREAYERLCA 64 Query: 61 ILAAT 65 +LA Sbjct: 65 VLAEL 69 >gi|223986398|ref|ZP_03636404.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] gi|223961640|gb|EEF66146.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] Length = 358 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 5/93 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 KI I + T S LA G+ + +K + P + + Sbjct: 1 MDQMKIGGFIALCRKEKGWTQSQLAEILGITDKAVSKWETGKS-----LPDYALLTPLSE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 A T+ +L +K ++ L Sbjct: 56 ALGITLSELFSGERIRAEDLMEKTDQVLLEVIA 88 >gi|167748234|ref|ZP_02420361.1| hypothetical protein ANACAC_02978 [Anaerostipes caccae DSM 14662] gi|167652226|gb|EDR96355.1| hypothetical protein ANACAC_02978 [Anaerostipes caccae DSM 14662] Length = 282 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 17/36 (47%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + N++ S LA K G+ + N+ ++ E Sbjct: 7 IKEIRSLLNMSQSELADKIGVSFATVNRWEKGRCEP 42 >gi|116494051|ref|YP_805785.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|191637372|ref|YP_001986538.1| Rep protein [Lactobacillus casei BL23] gi|116104201|gb|ABJ69343.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|190711674|emb|CAQ65680.1| Rep protein [Lactobacillus casei BL23] gi|327381414|gb|AEA52890.1| XRE family transcriptional regulator [Lactobacillus casei LC2W] gi|327384579|gb|AEA56053.1| XRE family transcriptional regulator [Lactobacillus casei BD-II] Length = 117 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 7/74 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 ++ I +A + LA KAG+ S + K+ PSTE++ K+ ++ Sbjct: 4 YDRIKTLASNRGWSLQKLALKAGIGINSIYRWKKMT-------PSTENVQKVADVLQVSV 56 Query: 70 CQLLDLPFSDGRTT 83 LL + Sbjct: 57 DYLLGNTDNPNPDN 70 >gi|92116675|ref|YP_576404.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799569|gb|ABE61944.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis X14] Length = 483 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 7/105 (6%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + S KK + R+ ++ L+ + +A G+ P+ N +R R + + + Sbjct: 1 MATNSGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQ-----RPVTAQIL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 ++ + + L + PL Sbjct: 56 LRLAETYDLDLRDLATADEDRFFAELNEVFSDPLFRQIDVPKQEL 100 >gi|83590550|ref|YP_430559.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573464|gb|ABC20016.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 67 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ L+ +A G+ +++ +R R+P E++ K+ T+ Sbjct: 8 EKLYQLRRERGLSQVKVASAVGITQSAYAMIERGQ-----RYPRKETMKKLADYFGLTVD 62 Query: 71 QLLD 74 +L Sbjct: 63 ELFF 66 >gi|78065731|ref|YP_368500.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77966476|gb|ABB07856.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 206 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 7/120 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA ++G+ + + +R P+ + K+ A Sbjct: 15 NERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASA-----SPTAVVLDKLAAGL 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEI 123 ++ L D T + P+ + +P+ + V P Sbjct: 70 GVSLAGLFGGDQDDTPTQPLARHAQQAEWRDPASGYVRRNLSPAGWPSPIQLVEVDFPPG 129 >gi|30262515|ref|NP_844892.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778059|ref|YP_019162.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|52142975|ref|YP_083853.1| DNA-binding protein [Bacillus cereus E33L] gi|165868912|ref|ZP_02213572.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631977|ref|ZP_02390304.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637695|ref|ZP_02395974.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685312|ref|ZP_02876536.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704891|ref|ZP_02895357.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649731|ref|ZP_02932733.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565261|ref|ZP_03018181.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196040422|ref|ZP_03107723.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218903655|ref|YP_002451489.1| DNA-binding protein [Bacillus cereus AH820] gi|227814666|ref|YP_002814675.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228915109|ref|ZP_04078706.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927582|ref|ZP_04090634.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933813|ref|ZP_04096659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946161|ref|ZP_04108495.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229600860|ref|YP_002866842.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685091|ref|ZP_05148951.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722499|ref|ZP_05184287.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737541|ref|ZP_05195244.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743274|ref|ZP_05200959.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751856|ref|ZP_05203893.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760376|ref|ZP_05212400.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|301054058|ref|YP_003792269.1| DNA-binding protein [Bacillus anthracis CI] gi|30257147|gb|AAP26378.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47551764|gb|AAT31637.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|51976444|gb|AAU17994.1| DNA-binding protein [Bacillus cereus E33L] gi|164715638|gb|EDR21155.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514244|gb|EDR89611.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532275|gb|EDR94911.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130692|gb|EDS99553.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170670672|gb|EDT21411.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084805|gb|EDT69863.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563288|gb|EDV17253.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196028907|gb|EDX67513.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218535205|gb|ACK87603.1| DNA-binding protein [Bacillus cereus AH820] gi|227004640|gb|ACP14383.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228813507|gb|EEM59794.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825885|gb|EEM71672.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832062|gb|EEM77647.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844538|gb|EEM89592.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265268|gb|ACQ46905.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300376227|gb|ADK05131.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 66 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I T LA++ G+ + ++ PS FKI + I Sbjct: 4 NRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFKIANVFEKPIT 58 Query: 71 QLLDLPF 77 + D Sbjct: 59 DVFDYQE 65 >gi|53690271|ref|ZP_00121920.2| COG1396: Predicted transcriptional regulators [Bifidobacterium longum DJO10A] gi|189439959|ref|YP_001955040.1| Xre family transcriptional regulator [Bifidobacterium longum DJO10A] gi|189428394|gb|ACD98542.1| Xre-type transcriptional regulator [Bifidobacterium longum DJO10A] Length = 362 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 40/150 (26%), Gaps = 7/150 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + NLT LA G+ + +K + +P + + I T+ Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNG 129 L+ S + + + S S + H Sbjct: 60 DLVLGDVSRPAASASAAGSSNVDSSAETASPLAASSKTAGIIAPIAELAQDITGYDEHRR 119 Query: 130 IYAIQ-TQDTRHKTQDTSMLPLYRKGDILI 158 +A+ + L+ + ++ Sbjct: 120 RFALLIAGGVAVIVAGVGIGNLFDSSNSIL 149 >gi|124268515|ref|YP_001022519.1| putative transcription regulator protein [Methylibium petroleiphilum PM1] gi|124261290|gb|ABM96284.1| putative transcription regulator protein [Methylibium petroleiphilum PM1] Length = 94 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 17/46 (36%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + ++ + + LT + LA + G+ + + +R Sbjct: 5 PVRTADQLPGLLQSFRKAAGLTQADLAARLGVTQQTLSALERNAGT 50 >gi|319784783|ref|YP_004144259.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170671|gb|ADV14209.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 202 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WPSTESI 58 ++ + + NL+ + LA KAG+ + ++ +R R + WP ++ Sbjct: 18 RVGRRVRALRLERNLSLADLAAKAGVSIGALSQIERGMSSLRVKVIWPLAAAL 70 >gi|307243674|ref|ZP_07525814.1| transcriptional regulator, PvuIIC family protein [Peptostreptococcus stomatis DSM 17678] gi|306492883|gb|EFM64896.1| transcriptional regulator, PvuIIC family protein [Peptostreptococcus stomatis DSM 17678] Length = 68 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + L+ A K+GL T + + + R + +++ KI A Sbjct: 9 KNLKKYRNEMGLSQEAFAEKSGLHRTYISALE-----CKKRSIALDNVQKIADALEIEPY 63 >gi|296269222|ref|YP_003651854.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092009|gb|ADG87961.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 432 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 6/66 (9%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S I E I + ++ L+ + LA L + + + R P+ + I Sbjct: 1 MASQGSIGERIKMLRKQRGLSQAQLAH-PELSDSYVSLIESG-----KRTPTPAVLELIA 54 Query: 63 AATNET 68 + Sbjct: 55 QKLGCS 60 >gi|295092301|emb|CBK78408.1| Predicted transcriptional regulator with C-terminal CBS domains [Clostridium cf. saccharolyticum K10] gi|295114876|emb|CBL35723.1| Predicted transcriptional regulator with C-terminal CBS domains [butyrate-producing bacterium SM4/1] Length = 95 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I A+ + L+ LA G+ +S + + P+ +++ KI Sbjct: 31 IVTAMVKQRNAMGLSQRELADMCGIPQSSVARIESLKTT-----PNLDTLLKIFCQLG 83 >gi|260433496|ref|ZP_05787467.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260417324|gb|EEX10583.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 288 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 4/109 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 ++R ++ ++ S LAR G+D ++ ++ + R P+ + +A + Sbjct: 17 RLNRAMDQRKMSQSALARTIGVDRSTVSQLL---TDSGARLPNAHVVGSCASALGVSADW 73 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119 LL L E + + P + G K V Sbjct: 74 LLSLSNRPESAAELLASSLTMTEAPRALVDERIFEWHQEAAGYKIRYVP 122 >gi|257790856|ref|YP_003181462.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474753|gb|ACV55073.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 261 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 5/98 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + +L+ + LA G+ S K + +P + + K+ ++ Sbjct: 5 DNLQHLRGTRDLSQAQLATLLGVSRQSVAKWE-----AEKSYPEMDKLIKLCDLFECSLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 L+ + T + E +D + Sbjct: 60 DLVRGDLTGCATANEAIVEAEPASAATPVDKDGYDEHM 97 >gi|228987486|ref|ZP_04147605.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772218|gb|EEM20665.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 115 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ + +LT L+ + GL + P ES+ + + N + Sbjct: 5 VGQNIKRLRKSFDLTQEQLSERTGLSRGQIKNWETD-----RHEPDLESLKVLASYFNTS 59 >gi|229070989|ref|ZP_04204216.1| transcriptional regulator, XRE [Bacillus cereus F65185] gi|228712171|gb|EEL64119.1| transcriptional regulator, XRE [Bacillus cereus F65185] Length = 108 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T LA L ++ +R R P ++ +I N + Sbjct: 5 GNIIRDLRKQKGITQKELALSLKLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58 >gi|258511056|ref|YP_003184490.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477782|gb|ACV58101.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 206 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + L+ + LA K G+ ++ +R E P +++ K+ Sbjct: 7 GEYLRSLRLARKLSINQLAEKTGISAAHISRLERNVRE----VPRPDTLRKLALGLGVPF 62 Query: 70 CQ 71 + Sbjct: 63 DE 64 Score = 39.4 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + R+ E L+ S +A AG+ + + R P ++ ++ Sbjct: 85 RRLQRLRESKGLSLSDVAHIAGISEAYLARLESAEG----RLPGVTTLHRLAQVF 135 >gi|197287327|ref|YP_002153199.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227356988|ref|ZP_03841360.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194684814|emb|CAR46896.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227162866|gb|EEI47825.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 192 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 38/144 (26%), Gaps = 3/144 (2%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +++ + + ++ + NL+ + L+RK+G+ + +K + R + E+I I Sbjct: 6 PKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSN--PRIDTLEAIA-I 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 K F G + P Sbjct: 63 ALGFPLGDLFSFTREEYPRLERHKPIVGDYAQEFKFRIGIGNITEIWHIEMKHGAIINSP 122 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDT 145 + + + + Sbjct: 123 AHADGTQEHIMVYSGKLMMRFAND 146 >gi|163839462|ref|YP_001623868.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952938|gb|ABY22453.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 200 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + R R L+ S AR+AG+ ++ ++ + PS E+++ I A Sbjct: 23 RELVAAGLIRERARAGLSLSETARRAGIAKSTLSQLESGVGN-----PSVETLWAICTAL 77 Query: 66 NETI 69 + Sbjct: 78 EISF 81 >gi|158340946|ref|YP_001522113.1| hypothetical protein AM1_E0029 [Acaryochloris marina MBIC11017] gi|158311187|gb|ABW32799.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 86 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 +R L+ + LA + G+ P S + + + ++L T E +C + Sbjct: 23 RKRAELSQTQLANELGVKPQSIGNWENGRSIPTLNPCQVKKLCEMLNVTLEELCNAVHWE 82 Query: 77 FS 78 Sbjct: 83 GP 84 >gi|114883636|ref|YP_740326.1| XRE-family transcriptional regulator protein [Plasmid pLB1] gi|113734277|dbj|BAF30453.1| XRE-family transcriptional regulator protein [Plasmid pLB1] Length = 85 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +I I R + +T L+ ++G+ + + R +G + ES+ + Sbjct: 15 QIGANIARELKNLGITQGELSERSGVAASHISYMVRG--QGNPTLATLESLADVFR 68 >gi|288227164|gb|ADC45065.1| putative transcriptional regulator (helix-turn-helix motif, XRE-like) [Cupriavidus metallidurans CH34] Length = 101 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + +AI R ++ + LAR+A + + + R P+ ++ KI A + Sbjct: 2 NVGQAIKLCRTRRGISQADLARQAECSVSYLSMLENN-----KRDPTLSTMTKIAHALHM 56 Query: 68 T 68 Sbjct: 57 P 57 >gi|15900920|ref|NP_345524.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|111657887|ref|ZP_01408599.1| hypothetical protein SpneT_02000929 [Streptococcus pneumoniae TIGR4] gi|149242896|pdb|2P5T|A Chain A, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242898|pdb|2P5T|C Chain C, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242900|pdb|2P5T|E Chain E, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242902|pdb|2P5T|G Chain G, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|14972524|gb|AAK75164.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] Length = 158 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 117 DLSDLIHTNIYLVETFDE 134 >gi|288956863|ref|YP_003447204.1| transcriptional regulator [Azospirillum sp. B510] gi|288909171|dbj|BAI70660.1| transcriptional regulator [Azospirillum sp. B510] Length = 221 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 6/117 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + LT L+ ++G+ + + +R P+ + ++ A Sbjct: 31 RLATRLRALRADRGLTLDSLSERSGVSRSMISLVERGES-----SPTASVLDRLAAGLGV 85 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEI 123 T+ L + ++ + P FP+ + V +P Sbjct: 86 TLATLFAEAERRDASPVARQSDQIAWTDPATGYRRRNLSPPGFPSPIELVEVELPAG 142 >gi|284034421|ref|YP_003384352.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813714|gb|ADB35553.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 200 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + ++ S LAR++G+ + ++ + P+ E++F + A Sbjct: 14 LGVNLRARRDEQGISLSELARRSGIAKGTLSQLESGAGN-----PTIETVFSLSNALG 66 >gi|270307696|ref|YP_003329754.1| hypothetical protein DhcVS_264 [Dehalococcoides sp. VS] gi|270153588|gb|ACZ61426.1| hypothetical protein DhcVS_264 [Dehalococcoides sp. VS] Length = 76 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 18/38 (47%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + ++ E+ L+ LAR+ G+ + N+ + + Sbjct: 12 LKKIREQLTLSQEDLARQLGVSYATVNRWENGQSKPSK 49 >gi|269794969|ref|YP_003314424.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269097154|gb|ACZ21590.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 204 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ +L+ LA++AG+ ++ +R PS SI ++ +A + Sbjct: 23 LGATVRAARKQLDLSVQALAQRAGVSLGLVSQLERGLGN-----PSLHSIQRLASALGVS 77 >gi|317047999|ref|YP_004115647.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316949616|gb|ADU69091.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 181 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 9/89 (10%), Positives = 29/89 (32%), Gaps = 5/89 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + A+ ++ + + + + A + G+ + +R P+ +++KI Sbjct: 5 HQHLSLALKQLRQANGWSLTLAAERTGVSKAMLGQIERGES-----SPTVATLWKIATGF 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLY 94 N + + + Sbjct: 60 NVPFSFFIQGSELPPGAAATFSQTNAQMQ 88 >gi|251789116|ref|YP_003003837.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537737|gb|ACT06358.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 81 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + E L+ LA G+D + + +R R + ++ +I A + Sbjct: 17 LGQTIRQRRELLGLSQENLASATGIDRSHMGRIERGE-----RNVTLLNLLRIADALEWS 71 Query: 69 ICQ 71 + Q Sbjct: 72 LEQ 74 >gi|229829704|ref|ZP_04455773.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] gi|229791693|gb|EEP27807.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] Length = 141 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + H+L+ LA K G+ + +K + P E + A +I Sbjct: 5 DNLIELRKYHDLSQEELAEKIGVSRQTLSKYETGES-----LPDIEKGKLLADAFGVSID 59 Query: 71 QLLDLP 76 L+ Sbjct: 60 DLISYD 65 >gi|291299224|ref|YP_003510502.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568444|gb|ADD41409.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 420 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 2/127 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN--RWPSTESIFKILAATNETIC 70 + T LA++ G++ +S + +R R E + + + Sbjct: 6 LAARRRARGHTQETLAQRLGVNVSSVARWERGLAIPYPHVRRALAEELGLPVEELTALLT 65 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 D + + L +G G + P + P Sbjct: 66 PAADPEPAAPSESVPPSWNRRRLEALATGLRGAQPATDTPGHAAHAWLVTPPPAEWSWLA 125 Query: 131 YAIQTQD 137 I+ Sbjct: 126 TRIRDHH 132 >gi|254525261|ref|ZP_05137316.1| gp08 [Stenotrophomonas sp. SKA14] gi|219722852|gb|EED41377.1| gp08 [Stenotrophomonas sp. SKA14] Length = 391 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 17/196 (8%), Positives = 41/196 (20%), Gaps = 20/196 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ + LA AGL + N G + P+ T + Sbjct: 4 RLKRLLTEAGIKQGDLASAAGLSRPALNALINHGQLPTSCDPAVVRAAISSCLTQHGVTD 63 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 P + + + + + Sbjct: 64 AHWHEKEGPTCGVTPAPVSPPQDTDNDNDIHDEEDPML--------LRFQALTPQAKRHF 115 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDR--LLIKPRTGDIVAK---- 183 + + S ++ DI + + G ++ + G + Sbjct: 116 GLTSNPFA---DPASAEEVFLSPDIRYVRESMYQVARHGGFAAVIGESGAGKSTLREDLV 172 Query: 184 -VLISRRGRSIDLMSL 198 + I + Sbjct: 173 DRIQREEQAVIVIQPY 188 >gi|167772036|ref|ZP_02444089.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM 17241] gi|167665834|gb|EDS09964.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM 17241] Length = 96 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I I ++ ++ LA K+ L ++ + + S ++++I AA N Sbjct: 31 KNIGFRIQFFRKKCGMSQEELAEKSNLSYSTISHIESTSTYP----MSIIALYRIAAALN 86 Query: 67 ETICQ 71 Q Sbjct: 87 IAPYQ 91 >gi|220925738|ref|YP_002501040.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950345|gb|ACL60737.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 149 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 21/39 (53%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I + I+R+ ++ L+ LA++ G+ + F K ++ Sbjct: 13 IGQRIERLRKQAKLSREALAQRLGISDSQFGKYEKGLNR 51 >gi|108758699|ref|YP_628542.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] gi|108462579|gb|ABF87764.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] Length = 272 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + L+ LAR+ G+ ++ + P+ E + I Sbjct: 3 LGATLRLLRTDAGLSLRDLARRIGVSSAYLSRVENGVDAP----PTPERLSAIARELRVP 58 Query: 69 ICQLLDLPFSDGR 81 L+D+ Sbjct: 59 SSLLMDVANRMSP 71 >gi|325263076|ref|ZP_08129811.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5] gi|324031469|gb|EGB92749.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5] Length = 80 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + + +T + LA +G+ ++ + + G+ R P +++ K+ N T Sbjct: 7 IIKRLTELCDERKITINKLASLSGITQSTVDNLIK----GKTRNPKLKTLHKLAIGLNMT 62 Query: 69 ICQLLDLPFSDGRTTEKK 86 I +LLD P + T E + Sbjct: 63 ISELLDFPEMNETTFEDE 80 >gi|323490301|ref|ZP_08095516.1| AnsR [Planococcus donghaensis MPA1U2] gi|323395971|gb|EGA88802.1| AnsR [Planococcus donghaensis MPA1U2] Length = 118 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ + I + E L+ LA G ++ + + S + ++ Sbjct: 2 KQLSKRIKDLREAKGLSTEELADAIGFAKSTVWAYESG-----KKQVSVVHLERLADYFE 56 Query: 67 ET 68 + Sbjct: 57 IS 58 >gi|310829543|ref|YP_003961900.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium limosum KIST612] gi|308741277|gb|ADO38937.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium limosum KIST612] Length = 380 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I I + ++ ++ LA G+ P S +K + P + + Sbjct: 2 KAIQLRIGTLRKQKGISQKMLAGAIGVTPQSVSKWETGAA-----LPDIGLLPALATFFE 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 ++ +LL L E + + Sbjct: 57 VSVDELLGLKSLPDDAYEPSGTGLSGYWSERM 88 >gi|269120755|ref|YP_003308932.1| peptidase S24 and S26 domain protein [Sebaldella termitidis ATCC 33386] gi|268614633|gb|ACZ09001.1| peptidase S24 and S26 domain protein [Sebaldella termitidis ATCC 33386] Length = 227 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 20/186 (10%) Query: 41 SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 S + +G+ R S + + +L + + E + S Sbjct: 40 SLKKLEDGKIRSISPRVLHTLAEIYGLNAVELFKMADFLDKNYEIERVHFIDYKMIGVSS 99 Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDI 156 + + E+ + K +D SM G Sbjct: 100 FEYVQFN-----------DIQELYDATELYNQRENDTYVIKMKDQSMQGLENRNIPDGSY 148 Query: 157 LILNSAIQVNC---GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDI 212 L++ S + N + + I + L + L S N Y + + D+ Sbjct: 149 LVVESDVPDNIFKLHNEVCIFKFMDKFYVRELQIV-NERVFLRSFNKKYADIMISNLRDL 207 Query: 213 EWIARI 218 + R+ Sbjct: 208 KCEGRV 213 >gi|253987834|ref|YP_003039190.1| prophage protein gp48 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779284|emb|CAQ82445.1| prophage protein gp48 [Photorhabdus asymbiotica] Length = 93 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ E + + LT S +A + G+ P + K + + S E++ + A Sbjct: 31 ERLQETLAEWRKFAGLTRSQVAERMGVTPPTVTKMENNVTKA-----SIETLVRYAQACG 85 Query: 67 ETICQ 71 Q Sbjct: 86 IQNPQ 90 >gi|229197740|ref|ZP_04324459.1| Helix-turn-helix domain protein [Bacillus cereus m1293] gi|228585685|gb|EEK43784.1| Helix-turn-helix domain protein [Bacillus cereus m1293] Length = 262 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 31/135 (22%), Gaps = 6/135 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + L+ LA K + +K + +P TE + I ++ Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L ++ + + G S G + Sbjct: 59 -DYLLKETAEQSNENVDGYYVSQEMAEGYVAYGQKISKYIALGFSLLILSTIPYLLFKEN 117 Query: 130 IYAIQTQDTRHKTQD 144 Sbjct: 118 ATMSTFLVIIVAVLG 132 >gi|257792397|ref|YP_003183003.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317490265|ref|ZP_07948753.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA] gi|325833618|ref|ZP_08166067.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257476294|gb|ACV56614.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316910759|gb|EFV32380.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA] gi|325485542|gb|EGC88011.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 83 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 4/44 (9%), Positives = 14/44 (31%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 ++ + L+ + LA G+ + + + + Sbjct: 20 ELCNRLKAARAEAGLSQAELAGLVGVSRQTISSIETGLFNPTAK 63 >gi|323339887|ref|ZP_08080156.1| signal peptidase IB [Lactobacillus ruminis ATCC 25644] gi|323092760|gb|EFZ35363.1| signal peptidase IB [Lactobacillus ruminis ATCC 25644] Length = 179 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM P G+ +++ +V + ++ G K +I G I Sbjct: 35 VEVVGNSMEPALHDGNEVLVRKYGKVKRFEIVIFTLPNGKTCVKRIIGLPGDMI 88 >gi|154505092|ref|ZP_02041830.1| hypothetical protein RUMGNA_02602 [Ruminococcus gnavus ATCC 29149] gi|166030597|ref|ZP_02233426.1| hypothetical protein DORFOR_00263 [Dorea formicigenerans ATCC 27755] gi|210617570|ref|ZP_03291626.1| hypothetical protein CLONEX_03848 [Clostridium nexile DSM 1787] gi|153794571|gb|EDN76991.1| hypothetical protein RUMGNA_02602 [Ruminococcus gnavus ATCC 29149] gi|166029599|gb|EDR48356.1| hypothetical protein DORFOR_00263 [Dorea formicigenerans ATCC 27755] gi|210149235|gb|EEA80244.1| hypothetical protein CLONEX_03848 [Clostridium nexile DSM 1787] Length = 138 Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 3/85 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQ 71 I + + +N+T + LA++ G+ + + G R S + + ++ + + Sbjct: 4 IKELRKENNITVAELAKELGISQSMLTNYENG--NGTPRDDSIWDRLSQLFGVSKSHVMG 61 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFP 96 L R + K Sbjct: 62 LTTDIDVVHRKKKFKAVVDMSEPIS 86 >gi|326387341|ref|ZP_08208951.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326208522|gb|EGD59329.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K + R+ LT +A ++G + +R R P+ +++++ Sbjct: 1 MDMRKLVGRNFARLRRDRGLTQEQVAERSGFSQQYLSNLERG-----WRNPTVITLYELS 55 Query: 63 AATNETICQ 71 A + Sbjct: 56 LALGVSHVD 64 >gi|325478374|gb|EGC81489.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 143 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ NLT LA K+GL + + R PS E + KI A + I Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISKALDCDI 58 Query: 70 CQLLDLPFSDGRTTEK 85 L++ + Sbjct: 59 SALINHEPNSIFEIMH 74 >gi|322411261|gb|EFY02169.1| Hypothetical phage associated protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 169 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 15/41 (36%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + + + LT GLA G+ + + + ++ Sbjct: 1 MNRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKS 41 >gi|289433695|ref|YP_003463567.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169939|emb|CBH26479.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 67 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + + E + + LA + + + ++ PS E KI Sbjct: 2 KVINRVKALREEKGIAQNDLASILEVSRQTIHAIEKGKYN-----PSLELSLKIAKYFEL 56 Query: 68 TICQLLDLPF 77 T+ ++ L Sbjct: 57 TVEEIFQLEE 66 >gi|289167670|ref|YP_003445939.1| transcriptional regulator, XRE family [Streptococcus mitis B6] gi|288907237|emb|CBJ22072.1| transcriptional regulator, XRE family [Streptococcus mitis B6] Length = 74 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESTGMTQQELADLIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|260438749|ref|ZP_05792565.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292808735|gb|EFF67940.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 67 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 ++ + ++ + LA + + + PS + FKI N + Sbjct: 3 NRLEELRKQRGIKQEELANALEVSRQTIGSLENGRYN-----PSIQLAFKIAKYFNMS 55 >gi|260595940|ref|YP_003208511.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032] gi|260215117|emb|CBA26887.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032] Length = 182 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 45/115 (39%), Gaps = 5/115 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +++ R R L+ + +AR+AG+ ++ ++ + PS E+++ + A + Sbjct: 8 IAKSLVRERTRAGLSLAEVARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVALDIP 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 +L++ + + + E + + + + + PE Sbjct: 63 FARLMEPQANKTQVIRRGEGPKVVAELANYQAILLATCPPGARRDIYLLLTQPEG 117 >gi|239981427|ref|ZP_04703951.1| DNA-binding protein [Streptomyces albus J1074] Length = 107 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +A+ L+ + LA +AG+ ++ + G + P + + L Sbjct: 33 DLGQAVYDRRVELGLSQAELAERAGMTQPQVSRME--GGDTVPTLPLLRRLARALE 86 >gi|239932598|ref|ZP_04689551.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291440960|ref|ZP_06580350.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291343855|gb|EFE70811.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 190 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 16/131 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS ++ KI A Sbjct: 9 QSLARNVRRWRTERGFTLDALAARAGVSRGMLIQIEQARTN-----PSIGTVVKIGDALG 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKW 115 +I LLD ++ + L + + G Sbjct: 64 VSITTLLDYERGPKVRIVPADRAVRLWHTEAGSYNRLLAGAEAPGPLEMWDWRLMPGEGS 123 Query: 116 NTVGVPEIRSP 126 + P Sbjct: 124 ASDPHPTGTVE 134 >gi|229131934|ref|ZP_04260799.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] gi|228651525|gb|EEL07495.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] Length = 149 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] Length = 122 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 5/90 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +K I + I + NLT +A K G+ P + + S ++ I Sbjct: 3 LDYKAIGKRIKIARIKKNLTQEAIADKIGITPQHVSNIETGNA-----SVSLTTLVAIAN 57 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ LL + +KE + Sbjct: 58 TLTVSVNDLLCDTVLISKAVFEKEAKELFE 87 >gi|182680496|ref|YP_001834642.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636379|gb|ACB97153.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 477 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I R+ E H LT A + G+ P+ N+ + R S + + + Sbjct: 11 IRRLREAHALTQGAFAERLGISPSYLNQIENNQ-----RPLSASVLLSLAQSF 58 >gi|254254842|ref|ZP_04948159.1| transcriptional regulator XRE family with cupin sensor domain [Burkholderia dolosa AUO158] gi|124899487|gb|EAY71330.1| transcriptional regulator XRE family with cupin sensor domain [Burkholderia dolosa AUO158] Length = 203 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 7/120 (5%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN--RWPSTESIF 59 + + ++ E I R+ LT L+R AG+ + ++ +R W T ++ Sbjct: 19 PATTPPRVGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALG 78 Query: 60 KILAATNETICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 L ++ + + P G Sbjct: 79 ITLDELFSQPKTPETIRVDGPHDIPTLAGHDGRYQLRVWGPIDLAGKFEWYELTLPAGGA 138 >gi|322383792|ref|ZP_08057543.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152004|gb|EFX44947.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 137 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + M ++ + A+K GL T+ + P ++ + K Sbjct: 15 MEMKYKEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNT-----PPSQILGK 69 Query: 61 ILAATNET 68 I N + Sbjct: 70 IAEGFNTS 77 >gi|312113826|ref|YP_004011422.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311218955|gb|ADP70323.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 199 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I ++ L+ + LA+K G+ + ++ + R + + A + Sbjct: 20 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGA-----RGLHLSKMEALAGALGVPVT 74 Query: 71 Q 71 + Sbjct: 75 E 75 >gi|291540748|emb|CBL13859.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 121 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + LT LA ++GL + ++ P+ E++ ++ + Sbjct: 9 LGKRIRSARKECQLTQQELADQSGLAVKTIQDIEKGRKN-----PTYETLCLLVDRLGIS 63 Query: 69 ICQLLD 74 + Sbjct: 64 GNTIFP 69 >gi|241896164|ref|ZP_04783460.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] gi|241870583|gb|EER74334.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] Length = 140 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 1 MTS-FSHKKIWE---AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 MT S +KI E I + + ++ A+K + + + + P + Sbjct: 1 MTLFLSKEKIMELSNKIKKRRKELGISQEEAAKKLYISRQTLSNWENDKT-----LPDID 55 Query: 57 SIFKILAATNETICQ 71 + I + ++ + Sbjct: 56 HLIDISNLYDLSLDE 70 >gi|239815433|ref|YP_002944343.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239802010|gb|ACS19077.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 139 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 10/108 (9%), Positives = 27/108 (25%), Gaps = 6/108 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + +T +A + G++ + + + G ++ K+ + +++ Sbjct: 2 RLASARDGKGMTQDQVAERFGVNKATVSAWE--TGRGVPDALRLRALAKLYDVSADSL-- 57 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 S K L G V Sbjct: 58 --LWEDSLSPDAMKFAAAFDGLNEQQKRQLFAMWEAYIREGASDAEVE 103 >gi|299823094|ref|ZP_07054979.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|307069497|ref|YP_003877975.1| transcriptional regulator [Listeria grayi] gi|299815503|gb|EFI82742.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|306480778|emb|CBV37319.1| transcriptional regulator [Listeria grayi] Length = 67 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K++ + ++ E NL+ LA + + + ++ PS E I Sbjct: 2 KVFNVVKQLREDRNLSQKDLAEALEVSRQTIHAIEKGKYN-----PSLELSLCIAKYFET 56 Query: 68 TICQLLDLPFS 78 +I + L Sbjct: 57 SIENIFYLEER 67 >gi|196250362|ref|ZP_03149055.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196210251|gb|EDY05017.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 120 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 10/99 (10%), Positives = 32/99 (32%), Gaps = 5/99 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + I ++ +NL+ A+ G+ S ++ + E + + + K N Sbjct: 5 QAGKLIRKLRRENNLSMIEFAKMVGISQPSLSRIENGNQE-----ITFQFLEKACETFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 ++ + + E ++ + + Sbjct: 60 SMSDFFRILEEKSKLQEIHLRKENNVNSEEELDTILANM 98 >gi|167463777|ref|ZP_02328866.1| prophage Lp1 protein 8 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 123 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + M ++ + A+K GL T+ + P ++ + K Sbjct: 1 MEMKYKEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNT-----PPSQILGK 55 Query: 61 ILAATNET 68 I N + Sbjct: 56 IAEGFNTS 63 >gi|161523788|ref|YP_001578800.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351451|ref|YP_001947079.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160341217|gb|ABX14303.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189335473|dbj|BAG44543.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 227 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 46/171 (26%), Gaps = 6/171 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 35 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ ++ S P Sbjct: 90 VAAFLRRHAVNGFEHLPAERASRVVSSNGRFSARALYPEGEPV-AAEFHELRIAPLHTEP 148 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 G+ + ++ + L+ V D+ GD Sbjct: 149 GVRRAPGTTVNLVVSEGTLEVVVHDRRQLLATGDAIVFDADQPYSLRNPGD 199 >gi|28557093|dbj|BAC57552.1| immunity repressor protein [Clostridium sordellii] Length = 133 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 10/86 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S + + + T +A+ + ++ + R P +E++ + Sbjct: 1 METLS-----TRLKELRKEKGYTLDQMAQDLNTTKVTLSRYENGT-----REPKSETLNQ 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86 + N +I L T+ + Sbjct: 51 LSDYFNVSIDYLFGKTDERNPKTKDE 76 >gi|86139328|ref|ZP_01057897.1| putative DNA-binding protein [Roseobacter sp. MED193] gi|85823831|gb|EAQ44037.1| putative DNA-binding protein [Roseobacter sp. MED193] Length = 182 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + + + LA+ +G+ S ++ ++ + P+ ES+ ++ AA Sbjct: 7 RLANRLATLRQDRGWSLDQLAQASGISRASLSRLEKGEV-----SPTAESLGQLCAAYAL 61 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + +LL ++ Sbjct: 62 PMSRLLMQVEDSHEQLVAASRQQVW 86 >gi|315574521|gb|EFU86712.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] Length = 394 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFDQLESFNPD 64 >gi|310830260|ref|YP_003965360.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753166|gb|ADO44309.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 89 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 S K I + + + L+ + LA KAGL + + + + R Sbjct: 12 RSPKDIGHVLRQARKAGGLSQADLAAKAGLWQRTVSTLETGAADAR 57 >gi|302527873|ref|ZP_07280215.1| DNA-binding protein [Streptomyces sp. AA4] gi|302436768|gb|EFL08584.1| DNA-binding protein [Streptomyces sp. AA4] Length = 226 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 I ++ R R L+ + +AR+AGL ++ ++ + PS E+++ + Sbjct: 50 DIIAASLRRERARAGLSLTEVARRAGLAKSTLSQLESGAGN-----PSVETLWAL 99 >gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 116 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ E ++T LA K + P+S + + S +I KI N + Sbjct: 13 IGQRIRKIREEKSMTQKKLAEKVMVSPSSITRLESGQT-----MVSVFTIIKIAEVLNTS 67 >gi|260906262|ref|ZP_05914584.1| transcriptional regulator, XRE family protein [Brevibacterium linens BL2] Length = 160 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R E LT S LA ++G+ + + ++ R PS ++ +L A + Sbjct: 8 IRRAREDAGLTQSVLAERSGVAQSVISSYEKG-----RREPSASALDVLLTAAGFRLVVE 62 Query: 73 LDLPFSDGRTTEKKE 87 + T E Sbjct: 63 PEPDALHKVRTHSAE 77 >gi|257890009|ref|ZP_05669662.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260560174|ref|ZP_05832351.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|257826369|gb|EEV52995.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073741|gb|EEW62066.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] Length = 87 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R + L+ + LA+K + + + + Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 60 >gi|229099134|ref|ZP_04230068.1| hypothetical protein bcere0020_43570 [Bacillus cereus Rock3-29] gi|228684362|gb|EEL38306.1| hypothetical protein bcere0020_43570 [Bacillus cereus Rock3-29] Length = 209 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 15/176 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I ++ + L+ A G+ ++ + G N+ PS E + K+ + Sbjct: 5 ELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLE----TGSNKKPSIEILEKLALGLDL 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L L + + + + + Sbjct: 61 HNNYLTYLAGYYKMPHIE-----YDENLTDEEKEEKIWAEIHKVDGGFTNNPFDILSPYP 115 Query: 128 NGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 A Q D ++K T+ L + + +I++ +VN + + + Sbjct: 116 QDPQAAQYNDDKNKLFKTATLACEHNQPFPIIVDKENKVN-----IEVYKENGLTL 166 >gi|260587242|ref|ZP_05853155.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542437|gb|EEX23006.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 121 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 ++ ++ R + L ++ G + + +R PS KI N T Sbjct: 54 LYNSLKEYRARLGINQQELGKRVGASRQTISLIERGDY-----SPSVTLALKIAKECNAT 108 Query: 69 ICQLLDLPF 77 + ++ Sbjct: 109 VEEIFRYEE 117 >gi|221214075|ref|ZP_03587048.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221166252|gb|EED98725.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 205 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/159 (8%), Positives = 40/159 (25%), Gaps = 22/159 (13%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA + G+ + + +R P+ + K+ A Sbjct: 15 NERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAA-----SPTAVVLDKLAAGL 69 Query: 66 NETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 ++ L ++ ++ + +P+ + V P Sbjct: 70 GISLAGLFGGDDGAPAQPLVRRAQQAEWRDPASGYARRNLSPPGWPSPLQLVEVDFPPGG 129 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163 + + + + Sbjct: 130 ----------------RVAYDTGAREIAWHQQIWVVRGR 152 >gi|219856265|ref|YP_002473387.1| hypothetical protein CKR_2922 [Clostridium kluyveri NBRC 12016] gi|219569989|dbj|BAH07973.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 108 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + H ++ + LA + + NK ++ + PS + + KI + Sbjct: 7 DIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAK-----PSIDLLIKICEFFSI 61 Query: 68 TICQLLDLPFSDGRTTEKKE 87 T+ + + + + Sbjct: 62 TLSEFFNNGNNSEPVILNPQ 81 >gi|160883371|ref|ZP_02064374.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483] gi|260172676|ref|ZP_05759088.1| hypothetical protein BacD2_12486 [Bacteroides sp. D2] gi|156111091|gb|EDO12836.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483] Length = 116 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 15/38 (39%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I EAI R E NLT L G+ +K + Sbjct: 48 IGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS 85 >gi|153955923|ref|YP_001396688.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348781|gb|EDK35317.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 104 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + ++ + H ++ + LA + + NK ++ + PS + + KI + Sbjct: 3 DIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAK-----PSIDLLIKICEFFSI 57 Query: 68 TICQLLDLPFSDGRTTEKKE 87 T+ + + + + Sbjct: 58 TLSEFFNNGNNSEPVILNPQ 77 >gi|16330362|ref|NP_441090.1| SOS function regulatory protein [Synechocystis sp. PCC 6803] gi|1652852|dbj|BAA17770.1| SOS function regulatory protein [Synechocystis sp. PCC 6803] Length = 203 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 130 IYAIQTQDTRHKT-QDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVL 185 ++ + + + +GD+LIL S ++ G+ + + G I K Sbjct: 102 PLMKKSSVFALRVMSNDLVDDFIVEGDMLILRSVTGEEEIEDGELVAASIKGGKIAIKRY 161 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220 + G + L + N P ++ SD+E + +W Sbjct: 162 Y-QDGTKVVLKASNNKGPGQELKASDVEIQGILMGVW 197 >gi|332880985|ref|ZP_08448655.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681159|gb|EGJ54086.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 117 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 6/107 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ I E + ++ E T +A+ G++ ++++ + G R + + K Sbjct: 1 MKTI-NQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYE-----GGTREVPYDILEK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + L + I L F Sbjct: 55 LSNLFGCEPFILFEDNVQADNEILATAFRISDLEDDDLKEIANFKDV 101 >gi|322383375|ref|ZP_08057160.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152334|gb|EFX45155.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 39/168 (23%), Gaps = 5/168 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K++ I ++ E LT LA + + + + + ++ I Sbjct: 7 LEKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRST--PPSDVLRNLADIF 64 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVP 121 + + + + + + + + D G Sbjct: 65 NVSADYLLGRGGNDEFVTPPEDNQGGAVSEIGWAIKLERQSQDMTQKELGKQVGENQRQI 124 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 T D + S P + + S GD Sbjct: 125 SSYELDLKPVPEHTLDKIMEVFGLSF-PEFLAKYNMWDESIHPHFDGD 171 >gi|309776993|ref|ZP_07671962.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915203|gb|EFP60974.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 99 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I E I E N+T S L + GL + +K PS +++ KI + Sbjct: 3 NIGEIIQDNLEMKNMTQSELGERLGLSQKAISKYVTGKS-----LPSIDTLEKICSIL 55 >gi|302061586|ref|ZP_07253127.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato K40] Length = 117 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 1 MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 M+ ++ +I E + E L+ + +A+ GL T+ + + Sbjct: 3 MSETDNEERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARK 52 >gi|326319216|ref|YP_004236888.1| helix-turn-helix domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376052|gb|ADX48321.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 92 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 20/46 (43%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 T + ++ + ++ LT S +A + G+ +++ +R Sbjct: 5 TVRTADQLPALLQAFRKQSGLTQSDVALRLGVTQQTYSALERNAGN 50 >gi|269796526|ref|YP_003315981.1| hypothetical protein [Sanguibacter keddieii DSM 10542] gi|269098711|gb|ACZ23147.1| Helix-turn-helix protein [Sanguibacter keddieii DSM 10542] Length = 134 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + A+ R +TP LA +A L + N RWP T S+ K Sbjct: 1 MPREHEDRARAAVTTELRRRGITPRQLALRAQLSTGTVNDFLNGV-----RWPRTGSLGK 55 Query: 61 ILAATNETI 69 I A Sbjct: 56 IEAFLGWPP 64 >gi|225856822|ref|YP_002738333.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|225725104|gb|ACO20956.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] Length = 158 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQHDFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 117 DLSDLIHTNIYLVETFDE 134 >gi|221200113|ref|ZP_03573156.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] gi|221206734|ref|ZP_03579746.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221211293|ref|ZP_03584272.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221168654|gb|EEE01122.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221173389|gb|EEE05824.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221180352|gb|EEE12756.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] Length = 227 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 46/171 (26%), Gaps = 6/171 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 35 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L +G E+ ++ S P Sbjct: 90 VAAFLRRHAVNGFEHLPAERASRVVSSNGRFSARALYPEGEPV-AAEFHELRIAPLHTEP 148 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 G+ + ++ + L+ V D+ GD Sbjct: 149 GVRRAPGTTVNLVVSEGTLEVVVHDRRQLLATGDAIVFDADQPYSLRNPGD 199 >gi|213969499|ref|ZP_03397636.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] gi|301382711|ref|ZP_07231129.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato Max13] gi|302131409|ref|ZP_07257399.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925870|gb|EEB59428.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] Length = 115 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 1 MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 M+ ++ +I E + E L+ + +A+ GL T+ + + Sbjct: 1 MSETDNEERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARK 50 >gi|29377033|ref|NP_816187.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344499|gb|AAO82257.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 126 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++ + + S LA L +S + + P+ E+I KI N + Sbjct: 7 LKQLRTKKGIKQSELAEILHLRQSSISDYENNRST-----PNPETIKKIAEYFNVS 57 >gi|89893492|ref|YP_516979.1| hypothetical protein DSY0746 [Desulfitobacterium hafniense Y51] gi|89332940|dbj|BAE82535.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 134 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + L+ LA + + +K + +P + + + N ++ Sbjct: 8 EKLRVLRKEKGLSQEQLAEMVNVSRQAVSKWESEQA-----YPELDKLILLSDFFNISLD 62 Query: 71 Q 71 Sbjct: 63 D 63 >gi|313889792|ref|ZP_07823434.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121837|gb|EFR44934.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 182 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 15/36 (41%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 + ++ E +LT LA+K G+ + + Sbjct: 1 MNRLKKLREESSLTQQELAKKIGVHYRTIQNWENGT 36 >gi|303241220|ref|ZP_07327727.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302591231|gb|EFL60972.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 71 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + K+ I + +T LA K + + +K +R P I K+ Sbjct: 1 MQNDKVGNIIRKTRLEQKMTQKQLADKLDISDKAISKWERGSGN-----PDISLILKLSD 55 Query: 64 ATNETICQLLDLPFSD 79 + +LL Sbjct: 56 ILGIDVRELLKAYEKP 71 >gi|302521750|ref|ZP_07274092.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302430645|gb|EFL02461.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 276 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 6/101 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + R+ + T LA + G+ + + + R P T K T Sbjct: 18 GEHLRRLRDGRGWTQEELAARMGISASHVSAVETG------RRPPTPQFAKRADRELATG 71 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 +L RT+ + + + + ++ GV P Sbjct: 72 DELRRRSRVARRTSLLEGFPEYVDHELRASEIRVYEVGVVP 112 >gi|289769326|ref|ZP_06528704.1| DNA-binding protein [Streptomyces lividans TK24] gi|289699525|gb|EFD66954.1| DNA-binding protein [Streptomyces lividans TK24] Length = 198 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 8/134 (5%), Positives = 33/134 (24%), Gaps = 3/134 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + +T + L+ G+ ++ ++ + + +I Sbjct: 18 DAVGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLEL--LLPLARIYDVPL 75 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + + + G + P+ P+ Sbjct: 76 DDLVGAPRTGDPRIHLKPVRRFGMVFVPLSRRPGGTQAFKMIIPSRPAPLE-PTPQTHEG 134 Query: 127 HNGIYAIQTQDTRH 140 +Y + + Sbjct: 135 SEWLYVLSGRLRLL 148 >gi|317053889|ref|YP_004117914.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316951884|gb|ADU71358.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 182 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 6 DIIAAGLVRERQRAGLSLTEVARRAGVAKSTLSQLEAGNGN-----PSIETLWSLCVALN 60 Query: 67 ETI 69 Sbjct: 61 IPF 63 >gi|229192878|ref|ZP_04319836.1| hypothetical protein bcere0002_45290 [Bacillus cereus ATCC 10876] gi|228590717|gb|EEK48578.1| hypothetical protein bcere0002_45290 [Bacillus cereus ATCC 10876] Length = 209 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I ++ + L+ A G+ ++ + G N+ PS E + K+ + Sbjct: 5 ELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLE----TGSNKKPSIEILEKLALGLDI 60 Query: 68 TICQLLDLPFSDGRT 82 L L Sbjct: 61 HNNYLTYLAGYYKMP 75 >gi|255533832|ref|YP_003094204.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346816|gb|ACU06142.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 113 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 11/112 (9%), Positives = 35/112 (31%), Gaps = 7/112 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I R ++ + +A + + +F+K + + + + + +I Sbjct: 2 NTISKNIKRFRQKKGWSQREVAEQLNISIPAFSKIENGITD-----INLKRLGQIATLLE 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +I L+ + ++ + +L + + V Sbjct: 57 ASIMDLMATDGENPQSKHS--MHVNMLKIKLAKKEEEVIDLQRRVIELYEEV 106 >gi|297587580|ref|ZP_06946224.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] gi|297574269|gb|EFH92989.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] Length = 327 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + +++NLT LA K G+ S +K + P I ++ Sbjct: 7 IILLRKKNNLTQEELAEKLGVSRQSVSKWEMGNSI-----PDINKIIQLSDVFG 55 >gi|161505447|ref|YP_001572559.1| hypothetical protein SARI_03605 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866794|gb|ABX23417.1| hypothetical protein SARI_03605 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 204 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I ++ R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A Sbjct: 30 IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVAL 81 >gi|156935962|ref|YP_001439878.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC BAA-894] gi|156534216|gb|ABU79042.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC BAA-894] Length = 182 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 47/133 (35%), Gaps = 5/133 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +++ R R L+ + +AR+AG+ ++ ++ + PS E+++ + A + Sbjct: 8 IAQSLVRERTRAGLSLAEVARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVALDIP 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 +L++ + + + E + + + + + PE Sbjct: 63 FARLMEPQANQTQVIRRGEGPKVVAELANYQAILLATCPPGARRDIYLLLTQPEGERLSQ 122 Query: 129 GIYAIQTQDTRHK 141 A + Sbjct: 123 PHPAGSVEHIIVT 135 >gi|68537028|ref|YP_251733.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|260579374|ref|ZP_05847256.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] gi|68264627|emb|CAI38115.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|258602503|gb|EEW15798.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] Length = 501 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 35/125 (28%), Gaps = 5/125 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + ++ + LA L + N+ + G R + + +I AA Sbjct: 22 VGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDG-----RPLTAAVLERITAAFGVD 76 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 D + + P + P+ V + + Sbjct: 77 PTFFADQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHPDLARAFVDLHSRYRNVS 136 Query: 129 GIYAI 133 ++ Sbjct: 137 DTLSL 141 >gi|86137418|ref|ZP_01055995.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85825753|gb|EAQ45951.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 133 Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + E ++T + LAR+ G+ T+ ++ E R S Sbjct: 17 GDRVAAAREAADMTQAQLARRLGVKKTTLMGWEQDLSEPRANKLSM 62 >gi|154174961|ref|YP_001408728.1| DNA polymerase III delta prime subunit [Campylobacter curvus 525.92] gi|112802141|gb|EAT99485.1| DNA polymerase III delta prime subunit [Campylobacter curvus 525.92] Length = 90 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 3/46 (6%) Query: 7 KKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + ++AI+ + LT S +A++ G+ ++ + + + Sbjct: 27 EDEYKAIEALIDARNEAGLTQSEVAKRMGITQSAVARIESGAYNIK 72 >gi|332969767|gb|EGK08779.1| signal peptidase I LepB [Desmospora sp. 8437] Length = 154 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 18/100 (18%) Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV-AKVLISR 188 + + ++ SM P G++ ++ + GD + + + K +I+ Sbjct: 20 YFVFDSFYAYYRVNGDSMAPALHDGEVYRVSKRESIQRGDVIAFRSDQESLTYIKRVIAL 79 Query: 189 RGRSIDLM-------------SLNCCYPVDTVEMSDIEWI 215 G + + +P D+E I Sbjct: 80 PGERVAIRGNHVYINDRKLAEPYLPNHPDIK----DVETI 115 >gi|291518470|emb|CBK73691.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 115 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + ++ + + AG+ P++ + K + PS + I I T Sbjct: 3 ITERIFYLIKARGMSQNSFGKAAGIAPSTISDWK-----TKGHTPSADKIMDICRVLEVT 57 Query: 69 I 69 Sbjct: 58 P 58 >gi|270292535|ref|ZP_06198746.1| conserved domain protein [Streptococcus sp. M143] gi|322388126|ref|ZP_08061731.1| transcriptional regulator [Streptococcus infantis ATCC 700779] gi|270278514|gb|EFA24360.1| conserved domain protein [Streptococcus sp. M143] gi|321141033|gb|EFX36533.1| transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 74 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESTGMTQQELADLIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|260911956|ref|ZP_05918520.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon 472 str. F0295] gi|260633903|gb|EEX52029.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon 472 str. F0295] Length = 71 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I + I M + L+ + L +K GL+ ++ + +++ I A Sbjct: 10 RERIGQKIASMRQEAKLSQAELGKKCGLERFHISRIESG-----RHSVGLDTLAAIARAL 64 Query: 66 NET 68 +T Sbjct: 65 GKT 67 >gi|240139328|ref|YP_002963803.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240009300|gb|ACS40526.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 198 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 5/72 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +L+ LA AG+ +K + I PS SI I +A N I L Sbjct: 24 IRMLRRERDLSVGDLAAAAGISQGMISKIENGTI-----SPSLASINAIASALNVPITGL 78 Query: 73 LDLPFSDGRTTE 84 + Sbjct: 79 FTAFEETRDCSH 90 >gi|225573541|ref|ZP_03782296.1| hypothetical protein RUMHYD_01734 [Blautia hydrogenotrophica DSM 10507] gi|225039099|gb|EEG49345.1| hypothetical protein RUMHYD_01734 [Blautia hydrogenotrophica DSM 10507] Length = 277 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 R+ L P+ + R+ G++ T F++ K+ + P+TE + KI N + Sbjct: 7 RLLAERGLKPADITRETGINSTVFSEWKKGKSK-----PNTEKLIKIAKFLNVS 55 >gi|187479415|ref|YP_787440.1| transcriptional regulator [Bordetella avium 197N] gi|115424002|emb|CAJ50555.1| putative transcriptional regulator [Bordetella avium 197N] Length = 111 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 4/61 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + T LA +GL P++ + G+ S ++ K+ + Sbjct: 6 DRLRTARNTRGWTQKELAELSGLTPSAIGNYE----SGQRAQASASAMLKLAEVLGVSPG 61 Query: 71 Q 71 Sbjct: 62 W 62 >gi|167039360|ref|YP_001662345.1| XRE family transcriptional regulator [Thermoanaerobacter sp. X514] gi|300913999|ref|ZP_07131316.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307725316|ref|YP_003905067.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|166853600|gb|ABY92009.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X514] gi|300890684|gb|EFK85829.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307582377|gb|ADN55776.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] Length = 137 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ E L +A+ G+ P+++ ++ R PS E + K+ N + Sbjct: 12 QRLRQLREEKGLLQKDVAKILGITPSAYGYYEQG-----KREPSMEVLKKLSDFFNVS 64 >gi|110597669|ref|ZP_01385954.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031] gi|110340789|gb|EAT59266.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031] Length = 109 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 +R LT +A K G ++ ++ + G PS ++ K A Sbjct: 46 ARQRSGLTQEAIASKIGTTKSAISRLESGG----KHIPSITTLRKYAEALGCE 94 >gi|194467261|ref|ZP_03073248.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454297|gb|EDX43194.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 74 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 8/78 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE---SIFKILAATN 66 + + + L+ LA+K G+ + N + PS E ++ K L Sbjct: 1 MNRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYN-----PSLELCINLAKALNTDL 55 Query: 67 ETICQLLDLPFSDGRTTE 84 ++ + + Sbjct: 56 NSLFWEERKNERNNQHQN 73 >gi|551457|gb|AAB46931.1| orf1 [Methylobacterium extorquens AM1] Length = 139 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 5/72 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +L+ LA AG+ +K + I PS SI I +A N I L Sbjct: 24 IRMLRRERDLSVGDLAAAAGISQGMISKIENGTI-----SPSLASINAIASALNVPITGL 78 Query: 73 LDLPFSDGRTTE 84 + Sbjct: 79 FTAFEETRDCSH 90 >gi|15607165|ref|NP_214537.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839397|ref|NP_334434.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31791200|ref|NP_853693.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|121635933|ref|YP_976156.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148659783|ref|YP_001281306.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148821214|ref|YP_001285968.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167968155|ref|ZP_02550432.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|215406012|ref|ZP_03418193.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215413880|ref|ZP_03422545.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215425216|ref|ZP_03423135.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215432933|ref|ZP_03430852.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215448297|ref|ZP_03435049.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|219555803|ref|ZP_03534879.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224988406|ref|YP_002643073.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253796938|ref|YP_003029939.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254233427|ref|ZP_04926753.1| hypothetical protein TBCG_00023 [Mycobacterium tuberculosis C] gi|254548955|ref|ZP_05139402.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199017|ref|ZP_05766508.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260203164|ref|ZP_05770655.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289441390|ref|ZP_06431134.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289552273|ref|ZP_06441483.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289567908|ref|ZP_06448135.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289572599|ref|ZP_06452826.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289747793|ref|ZP_06507171.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289748486|ref|ZP_06507864.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289756082|ref|ZP_06515460.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289760120|ref|ZP_06519498.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294995636|ref|ZP_06801327.1| transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|297632494|ref|ZP_06950274.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN 4207] gi|297729465|ref|ZP_06958583.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN R506] gi|298527421|ref|ZP_07014830.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|306778315|ref|ZP_07416652.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306778844|ref|ZP_07417181.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306782634|ref|ZP_07420956.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306787000|ref|ZP_07425322.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306791558|ref|ZP_07429860.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306795621|ref|ZP_07433923.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306801597|ref|ZP_07438265.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306805804|ref|ZP_07442472.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306970202|ref|ZP_07482863.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306974435|ref|ZP_07487096.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307082143|ref|ZP_07491313.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307082483|ref|ZP_07491596.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313656794|ref|ZP_07813674.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN V2475] gi|54039886|sp|P67705|Y023_MYCBO RecName: Full=Uncharacterized HTH-type transcriptional regulator Mb0023 gi|54042795|sp|P67704|Y023_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator Rv0023/MT0026 gi|1552578|emb|CAB02443.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13879067|gb|AAK44248.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31616785|emb|CAD92885.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] gi|121491580|emb|CAL70037.1| Possible transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603220|gb|EAY61495.1| hypothetical protein TBCG_00023 [Mycobacterium tuberculosis C] gi|148503935|gb|ABQ71744.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148719741|gb|ABR04366.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224771519|dbj|BAH24325.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253318441|gb|ACT23044.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289414309|gb|EFD11549.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289436905|gb|EFD19398.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289537030|gb|EFD41608.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289541661|gb|EFD45310.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289688321|gb|EFD55809.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289689073|gb|EFD56502.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289696669|gb|EFD64098.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289715684|gb|EFD79696.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298497215|gb|EFI32509.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|308213460|gb|EFO72859.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308328177|gb|EFP17028.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308332482|gb|EFP21333.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308336294|gb|EFP25145.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339898|gb|EFP28749.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308343913|gb|EFP32764.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308347697|gb|EFP36548.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308351614|gb|EFP40465.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308352321|gb|EFP41172.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308356221|gb|EFP45072.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308360211|gb|EFP49062.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308367773|gb|EFP56624.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323717362|gb|EGB26567.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326905784|gb|EGE52717.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328456729|gb|AEB02152.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 256 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 17/185 (9%), Positives = 42/185 (22%), Gaps = 12/185 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E + + + LA G+ + +R R P ++ K+ Sbjct: 1 MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGA-----RKPHKSTVQKVEN 55 Query: 64 ATNETICQLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 L + E + + + G Sbjct: 56 GLGLPPGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQ 115 Query: 118 VGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176 + + + + + + + + RL+ R Sbjct: 116 LDAIKSVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLR 175 Query: 177 TGDIV 181 + Sbjct: 176 ALEAT 180 >gi|329910926|ref|ZP_08275406.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] gi|327546048|gb|EGF31123.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] Length = 191 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 42/140 (30%), Gaps = 18/140 (12%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ + RM +LT L+R AG+ + ++ +R P+ +++ A Sbjct: 9 TPPEVGATLQRMRLERDLTLEDLSRAAGVSKSMLSQIEREKAN-----PTIAVAWRLANA 63 Query: 65 TNETICQ-------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 +I + +++ + + +L + Sbjct: 64 LGVSIAELLSTEARPLEAIRVMEPHETPTLPGGHAGYVLRILGPMALAGKHEWYELTLSA 123 Query: 112 GNKWNTVGVPEIRSPHNGIY 131 G + + H + Sbjct: 124 GGALVSNPHDPGTTEHLTVL 143 >gi|330818256|ref|YP_004361961.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327370649|gb|AEA62005.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 226 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 6/171 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + R+ L+ LAR +G+ + + PS + + K+ AA + Sbjct: 39 VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 93 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L G E+ + ++ S P +++ + + + + Sbjct: 94 VAAFLRRHAVLGFEHLPAERAVRVVASNGRFSSRALYPEGEPATAEFHELRIAPLHTETG 153 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 A + ++ L+ V D+ GD Sbjct: 154 VRRA-PGTTINLVVSEGTLELSVHDRRQLLATGDAIVFDADQPYTLRNPGD 203 >gi|325264148|ref|ZP_08130880.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] gi|324030632|gb|EGB91915.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] Length = 189 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 13/101 (12%) Query: 1 MTSFSHKKIWE--------AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 M +++I E I + + ++T L ++ GL + +R Sbjct: 1 MAELFNERIGEEQNDDVGGKIRALRKEKDITLKQLGKETGLSIGYLSNLERDAC-----S 55 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 P+ +++ KI ++ +LLD R K+E+++ Sbjct: 56 PTLDNLQKICGVLEISLIELLDGMNQGRRVIRKEERKVVFE 96 >gi|323351737|ref|ZP_08087391.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322122223|gb|EFX93949.1| transcriptional regulator [Streptococcus sanguinis VMC66] Length = 136 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + I + +R N++ LA + G+ + K + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVP 41 >gi|322385349|ref|ZP_08058994.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270608|gb|EFX53523.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 158 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTT 83 ++ Sbjct: 57 YVDIVGEDKMLNPVE 71 >gi|300971958|ref|ZP_07171746.1| peptidase S24-like domain protein [Escherichia coli MS 45-1] gi|300411083|gb|EFJ94621.1| peptidase S24-like domain protein [Escherichia coli MS 45-1] Length = 109 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174 + V + + + + K SM+ GD+LI++SAI + GD ++ Sbjct: 32 DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89 Query: 175 PRTGDIVAK 183 G+ K Sbjct: 90 VD-GEFTVK 97 >gi|260663675|ref|ZP_05864564.1| prophage LambdaSa03 [Lactobacillus fermentum 28-3-CHN] gi|260551901|gb|EEX25016.1| prophage LambdaSa03 [Lactobacillus fermentum 28-3-CHN] Length = 111 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S+ +I + ++ LT S +AR+ G+ ++ ++ ++R + Sbjct: 1 MRSNDEIIRYLTQLKNEQQLTISEIARRTGMAKSAISRYFN-----KSREFPVNKVDDFA 55 Query: 63 AATNETICQ 71 N T + Sbjct: 56 KVFNVTPEE 64 >gi|259506603|ref|ZP_05749505.1| transcriptional regulator [Corynebacterium efficiens YS-314] gi|259165801|gb|EEW50355.1| transcriptional regulator [Corynebacterium efficiens YS-314] Length = 138 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 1/116 (0%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNE 67 + + + + + LA + + + +R G+ P +++K+ A + Sbjct: 23 LGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDV 82 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 LL + E + +P FD + P + P Sbjct: 83 PPAALLPAVGEKPQGICVDESLPVDVRWPAPRDEVLFDVPLTPPEHPRRADRQPPR 138 >gi|228477808|ref|ZP_04062436.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|322374168|ref|ZP_08048701.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] gi|228250500|gb|EEK09714.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|321276873|gb|EFX53945.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] Length = 150 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 34/109 (31%), Gaps = 5/109 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 F++ + + + + LT ++ + ++++ + +E PS E++ K+ Sbjct: 1 MFNNNSFGDRLKELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLE-----PSLEAVVKLA 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + T LL L + D F Sbjct: 56 KLFDTTTDYLLGKTIYSTLDVVPHPITRIDLKKLKGFNKTELDDLKFAI 104 >gi|255656468|ref|ZP_05401877.1| transcriptional regulator, XRE family protein [Clostridium difficile QCD-23m63] Length = 65 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 ++ + ++ L A+ + + + + PS E F+I +I ++ Sbjct: 5 VEALRKKKGLNQEDFAKILKVSRQTISSIENGKYN-----PSLELAFQISDFFEMSIEEI 59 Query: 73 LDLPF 77 Sbjct: 60 FLWKE 64 >gi|158425505|ref|YP_001526797.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332394|dbj|BAF89879.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 72 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 7/71 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + R+ + LT + ++G + +R R P+ ++++ Sbjct: 1 MDM--RKLVGRNFARLRQEKGLTQEDVQTRSGFSQQYISGLERG-----RRNPTVITLYE 53 Query: 61 ILAATNETICQ 71 + A + + Sbjct: 54 LAQALGVSHEE 64 >gi|148554493|ref|YP_001262075.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499683|gb|ABQ67937.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 57 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 R+ E + A +AG+ T + +R R P+ + + K+ A Q Sbjct: 2 RRLREEKGWSQEAYADEAGIHRTYISDIERGA-----RNPTVKVVEKLAAPFGVPAGQ 54 >gi|89896521|ref|YP_520008.1| hypothetical protein DSY3775 [Desulfitobacterium hafniense Y51] gi|89335969|dbj|BAE85564.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 63 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + N++ LA++ + + N + + P+ FK+ T+ Sbjct: 3 NNIKQHRKEKNISQEDLAKRCNVSRQTINAIENNKYD-----PTLSLAFKLAEVLQVTVD 57 Query: 71 QLLD 74 +L + Sbjct: 58 ELFN 61 >gi|120597109|ref|YP_961683.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|120557202|gb|ABM23129.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1] Length = 188 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 7/112 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + A++ G+ + +R P+ +++KI + N + Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + L+ T +K E+ F + + Sbjct: 63 LSTFLEPTPQSQGTVFRKPDELRQQPATDGMLVASLFP--FEERFGFEMFEL 112 >gi|319650130|ref|ZP_08004279.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] gi|317398311|gb|EFV79000.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] Length = 183 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 53/197 (26%), Gaps = 37/197 (18%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K I E + + + + A G+ + +R P+ +++KI + Sbjct: 5 QKSIGENLRNIRKTRGYSLDAAAEITGVSKAMLGQIERGESN-----PTVTTLWKIASGL 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + + G+ P Sbjct: 60 QVSF----------------SSLIHEEPSDVQLIELKTLTPIMESMGDYRVYPVFPFDPR 103 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 I+ ++ + T D + + I +++ +++ GD+ + Sbjct: 104 KKFEIFTVEIESGCQHTSDKHNEGV--EEYITVMSGTLEIEIGDQ-------------RI 148 Query: 186 ISRRGRSIDLMSLNCCY 202 R G SI S N + Sbjct: 149 TVRSGNSIKF-SANKAH 164 >gi|315925909|ref|ZP_07922114.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620730|gb|EFV00706.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 188 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + + L+ LA K + + +K +R P +E + I Sbjct: 23 ENIKTIRKSKGLSQDELAVKLNVVRQTVSKWERGLSV-----PDSEMLISISEVLETP 75 >gi|315445351|ref|YP_004078230.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|315263654|gb|ADU00396.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1] Length = 150 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 4/111 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT K+ + +L+ + +AR+A +DP + + ++ G+ R ES+ Sbjct: 1 MTPDQTVKLINLLKARRSELHLSVNEVARRADVDPGTAWRIEQGQ-IGKPRA---ESLIA 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 I + + L +P Sbjct: 57 IGSVLGISAMDLFATVGWLTADELPSLGAYLDAKYPNLPEPVSKHIEHHVE 107 >gi|298369856|ref|ZP_06981172.1| hypothetical protein HMPREF9016_01190 [Neisseria sp. oral taxon 014 str. F0314] gi|298281316|gb|EFI22805.1| hypothetical protein HMPREF9016_01190 [Neisseria sp. oral taxon 014 str. F0314] Length = 153 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 5/69 (7%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + T S LA AGL ++ + + E++ K+ A + ++ Sbjct: 87 SLRMKKGFTQSELAAAAGLRQPYLSRIEN-----SKQSLHNETVQKLANALGVSPLEVRA 141 Query: 75 LPFSDGRTT 83 Sbjct: 142 AFEQQYEYM 150 >gi|284045004|ref|YP_003395344.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949225|gb|ADB51969.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 196 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + + E +L+ LA ++G+ ++ +R P+ + +I Sbjct: 12 IGSRVRALREAMDLSLRDLAERSGVSAPMLSQVERGET-----SPTLQVATRIAHGL 63 >gi|312194196|ref|YP_004014257.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311225532|gb|ADP78387.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 304 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 17/43 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 ++ A+ + +R +T L R G +K +R + Sbjct: 29 ELGRALAGLRKRKGMTGEELGRAIGASQAKISKIERGALRPSP 71 >gi|255066370|ref|ZP_05318225.1| putative helix-turn-helix protein [Neisseria sicca ATCC 29256] gi|255049250|gb|EET44714.1| putative helix-turn-helix protein [Neisseria sicca ATCC 29256] Length = 153 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 5/69 (7%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + T S LA AGL ++ + + E++ K+ A + ++ Sbjct: 87 SLRMKKGFTQSELAAAAGLRQPYLSRIEN-----SKQSLHNETVQKLANALGVSPLEVRA 141 Query: 75 LPFSDGRTT 83 Sbjct: 142 AFEQQYEYM 150 >gi|228944436|ref|ZP_04106809.1| hypothetical protein bthur0007_6100 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089747|ref|ZP_04221007.1| hypothetical protein bcere0021_5900 [Bacillus cereus Rock3-42] gi|229171467|ref|ZP_04299051.1| hypothetical protein bcere0006_5940 [Bacillus cereus MM3] gi|301052335|ref|YP_003790546.1| transcriptional regulator [Bacillus anthracis CI] gi|228612005|gb|EEK69243.1| hypothetical protein bcere0006_5940 [Bacillus cereus MM3] gi|228693555|gb|EEL47258.1| hypothetical protein bcere0021_5900 [Bacillus cereus Rock3-42] gi|228815338|gb|EEM61586.1| hypothetical protein bthur0007_6100 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|300374504|gb|ADK03408.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 72 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N + S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38 >gi|258510478|ref|YP_003183912.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477204|gb|ACV57523.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 163 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ L+ LA + + ++ R P E++ K+ + + Sbjct: 6 GERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGT-----REPDIETLKKLADFFDVS 59 >gi|296137789|ref|YP_003645032.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296025923|gb|ADG76693.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 377 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 3/63 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + E I R ++ LA + + K + R+ P + ++ Sbjct: 1 MTVDTLGERIKAWRLRRGMSQQDLADRMSRSKSWIQKLE---GSERHSDPRLSVLREVSE 57 Query: 64 ATN 66 A Sbjct: 58 ALG 60 >gi|197106394|ref|YP_002131771.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479814|gb|ACG79342.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] Length = 86 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + LA + G+ S N + + PS F+I Sbjct: 24 NRLKVLRAERDWSQGDLAERLGVSRQSVNAIETGKYD-----PSLPLAFRIARVFG 74 >gi|183600925|ref|ZP_02962418.1| hypothetical protein PROSTU_04537 [Providencia stuartii ATCC 25827] gi|188019254|gb|EDU57294.1| hypothetical protein PROSTU_04537 [Providencia stuartii ATCC 25827] Length = 299 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 8/149 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + ++ ++ A G+ T+ NK + G + E + ++L + Sbjct: 8 GQRLLALLKQQKMSQLKAAEALGVSRTAVNKWTKG---GMIDENNLEKLAQLLNVDKIWL 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + + I ++ S TG + + G Sbjct: 65 KYGEYTNHASTASHPAIVRNINEVHLQESTE-IVTWEWDLLTG----ELNYSDNVEDVYG 119 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 I D S L +I Sbjct: 120 IKITTNDDFWALMNQESKDKLVNGYSKII 148 >gi|196047089|ref|ZP_03114307.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225862662|ref|YP_002748040.1| DNA-binding protein [Bacillus cereus 03BB102] gi|196022070|gb|EDX60759.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225786476|gb|ACO26693.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 72 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N + S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38 >gi|196035723|ref|ZP_03103126.1| DNA-binding protein [Bacillus cereus W] gi|195991690|gb|EDX55655.1| DNA-binding protein [Bacillus cereus W] Length = 72 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N + S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38 >gi|196042052|ref|ZP_03109337.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218901880|ref|YP_002449714.1| DNA-binding protein [Bacillus cereus AH820] gi|196027077|gb|EDX65699.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218538431|gb|ACK90829.1| DNA-binding protein [Bacillus cereus AH820] Length = 72 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N + S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38 >gi|206977796|ref|ZP_03238686.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217958270|ref|YP_002336816.1| DNA-binding protein [Bacillus cereus AH187] gi|229195008|ref|ZP_04321785.1| hypothetical protein bcere0001_5850 [Bacillus cereus m1293] gi|206743993|gb|EDZ55410.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217063059|gb|ACJ77309.1| DNA-binding protein [Bacillus cereus AH187] gi|228588443|gb|EEK46484.1| hypothetical protein bcere0001_5850 [Bacillus cereus m1293] gi|324324726|gb|ADY19986.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 72 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N + S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38 >gi|94264958|ref|ZP_01288729.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|94265765|ref|ZP_01289500.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453700|gb|EAT04081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93454561|gb|EAT04839.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 101 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + + LT L K GL + ++ + ++ R S + + L Sbjct: 3 DDIVKKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDM--RLSSFLEMARFLD 57 >gi|30260836|ref|NP_843213.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47777843|ref|YP_017315.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165872709|ref|ZP_02217338.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635142|ref|ZP_02393458.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167640908|ref|ZP_02399166.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170689675|ref|ZP_02880854.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170709381|ref|ZP_02899793.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177652779|ref|ZP_02935152.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190568519|ref|ZP_03021425.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227816443|ref|YP_002816452.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228963784|ref|ZP_04124925.1| hypothetical protein bthur0004_6520 [Bacillus thuringiensis serovar sotto str. T04001] gi|229602026|ref|YP_002865281.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254684237|ref|ZP_05148097.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254725898|ref|ZP_05187680.1| transcriptional regulator [Bacillus anthracis str. A1055] gi|254734400|ref|ZP_05192113.1| transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254742086|ref|ZP_05199773.1| transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254754927|ref|ZP_05206961.1| transcriptional regulator [Bacillus anthracis str. Vollum] gi|254762342|ref|ZP_05214186.1| transcriptional regulator [Bacillus anthracis str. Australia 94] gi|30254285|gb|AAP24699.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47551548|gb|AAT29790.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164711570|gb|EDR17118.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167511128|gb|EDR86516.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529401|gb|EDR92152.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170125702|gb|EDS94617.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170666376|gb|EDT17160.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081813|gb|EDT66882.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190560313|gb|EDV14292.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227002503|gb|ACP12246.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228795929|gb|EEM43396.1| hypothetical protein bthur0004_6520 [Bacillus thuringiensis serovar sotto str. T04001] gi|229266434|gb|ACQ48071.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 72 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N + S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38 >gi|54023278|ref|YP_117520.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54014786|dbj|BAD56156.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 187 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 17/176 (9%), Positives = 46/176 (26%), Gaps = 20/176 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ R R L+ S +A +AG+ ++ ++ + PS E+++ + A Sbjct: 13 IAASLRRERTRAGLSLSEVAARAGIAKSTLSQLESGSGN-----PSLETLWALCVAL--- 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + + + + G + I + Sbjct: 65 ---DMPFSRLLDPPRPVVHVIRAGEGPAVAAERSDYHATLLAAGPSNTRRDLFRITAEPG 121 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIV 181 Q + + ++ + GD + + Sbjct: 122 QPRESQPHIPGV------IEHILLAAGRALVGPTGEPVELAPGDYIAYPGDAPHVF 171 >gi|89097987|ref|ZP_01170873.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] gi|89087150|gb|EAR66265.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] Length = 187 Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 HK I E + + L+ A G+ + +R P+ +++KI + Sbjct: 9 HKNIGENLRNIRRSRGLSLDMAAEATGVSKAMLGQIERGESN-----PTVTTLWKIASGL 63 Query: 66 NETI 69 + Sbjct: 64 QISF 67 >gi|332361883|gb|EGJ39686.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 136 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + I + +R N++ LA + G+ + K + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVP 41 >gi|325979177|ref|YP_004288893.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179105|emb|CBZ49149.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 69 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + I + ++ S L+++ G+ + +K + E + S S+ ++ Sbjct: 7 QLSKNIKKYRLMKKMSQSDLSKRIGVSHQAISKWE--TGENYPDFMSLISLAQLFE 60 >gi|323975381|gb|EGB70482.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 154 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + L+ A + G + ++ +R G S ++I Sbjct: 1 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55 Query: 61 ILAATNETICQ 71 + A + Q Sbjct: 56 LANALSVEPWQ 66 >gi|302530038|ref|ZP_07282380.1| transcriptional regulator [Streptomyces sp. AA4] gi|302438933|gb|EFL10749.1| transcriptional regulator [Streptomyces sp. AA4] Length = 172 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + +L+ LA +AG + + +R + P+ +++ ++LA T Sbjct: 3 IAELLTTARKAADLSQQELAERAGTSRPTLSAYERG-----RKSPTLDTVTRLLAGAGFT 57 >gi|299069355|emb|CBJ40621.1| putative transcriptional regulator [Ralstonia solanacearum CMR15] Length = 182 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 A+ + +R L+ L+R+AG+ + ++ +R P+ ++++ A ++ Sbjct: 4 ALQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTN-----PTVAVLWRLANALGVSLTD 58 Query: 72 L 72 Sbjct: 59 F 59 >gi|257867716|ref|ZP_05647369.1| predicted protein [Enterococcus casseliflavus EC30] gi|257874043|ref|ZP_05653696.1| predicted protein [Enterococcus casseliflavus EC10] gi|257801799|gb|EEV30702.1| predicted protein [Enterococcus casseliflavus EC30] gi|257808207|gb|EEV37029.1| predicted protein [Enterococcus casseliflavus EC10] Length = 200 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 8/85 (9%), Positives = 28/85 (32%), Gaps = 5/85 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ +T LA++ + ++ + + +P ++ ++ ++ +L Sbjct: 7 IKERRKQLGMTQEELAKELNVSRSAISNWEIGRN-----YPDITTLIELAQMYQVSLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPP 97 + K+ L Sbjct: 62 FYDDIDLVNKFAEDNKKKEQLKKVN 86 >gi|227893879|ref|ZP_04011684.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] gi|227864368|gb|EEJ71789.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] Length = 65 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ NL+ LA+K G+ + N + PS E + A Sbjct: 1 MNRVKKYRKQKNLSQMALAKKIGVARQTINLIENDKYN-----PSLELCLNLAHALGTD 54 >gi|194015234|ref|ZP_03053850.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012638|gb|EDW22204.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 156 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I +R + LA A + + +K +R + PS + + K+ ++ Sbjct: 2 IGKVIRIYRKRKGYSIQQLAEDAHVSKSYLSKIERGVH----KNPSVQFLKKVSSSLEID 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 + +L D +E E E + + G ++ Sbjct: 58 LQELFDAETLMFHDSESGEHEWR-EHIVNAVQSGMPKEELY 97 >gi|206976191|ref|ZP_03237100.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] gi|206745645|gb|EDZ57043.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] Length = 262 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 6/135 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + L+ LA K + +K + +P TE + I ++ Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L ++ ++ + G S G + Sbjct: 59 -DYLLKENAEQSNEKENGYYVSKEMAEGYIVYGEKISKYIALGFSLLILSTIPYLLFKED 117 Query: 130 IYAIQTQDTRHKTQD 144 + Sbjct: 118 VTMSTFLVIIIAVFG 132 >gi|217961038|ref|YP_002339606.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|222097090|ref|YP_002531147.1| helix-turn-helix domain protein [Bacillus cereus Q1] gi|217067952|gb|ACJ82202.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|221241148|gb|ACM13858.1| helix-turn-helix domain protein [Bacillus cereus Q1] Length = 262 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 6/135 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + L+ LA K + +K + +P TE + I ++ Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L ++ ++ + G S G + Sbjct: 59 -DYLLKENAEQSNEKENGYYVSKEMAEGYIVYGEKISKYIALGFSLLILSTIPYLLFKED 117 Query: 130 IYAIQTQDTRHKTQD 144 + Sbjct: 118 VTMSTFLVIIIAVFG 132 >gi|126729760|ref|ZP_01745573.1| hypothetical protein SSE37_04780 [Sagittula stellata E-37] gi|126709879|gb|EBA08932.1| hypothetical protein SSE37_04780 [Sagittula stellata E-37] Length = 150 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 ++I + + E L+PS +A G++ T +++ + Sbjct: 68 ERIGYRLRLLREALGLSPSEMADMLGIERTYWSRFENGRR 107 >gi|311747920|ref|ZP_07721705.1| putative transcriptional regulator [Algoriphagus sp. PR1] gi|126575914|gb|EAZ80224.1| putative transcriptional regulator [Algoriphagus sp. PR1] Length = 192 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 2/179 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I + + +LT +A +AG+ ++ + I + L + Sbjct: 8 QISNKIKSVRKEKSLTLQDIADRAGVTKGLISQIENGRTI--PSLLVLIEIIQALEVDFD 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + L S + +++ E + + + + + EI+ Sbjct: 66 SFFTELSKFSSGTKVFVQRKNEYQKFEKEDALGFDYSRIFTRKMPSSTIDIVLLEIQPGA 125 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186 + S+ +++ + + + G G + K+L+ Sbjct: 126 KRNFVTTEAFEYKYIISGSVKYIFKDQSVFLNEGDSMLFDGRLTHNPVNEGKVPVKMLV 184 >gi|319424700|gb|ADV52774.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 188 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 7/112 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + A++ G+ + +R P+ +++KI + N + Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + L+ +K E+ F + + Sbjct: 63 LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFP--FEERFGFEMFEL 112 >gi|17549183|ref|NP_522523.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431435|emb|CAD18113.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 182 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 A+ + +R L+ L+R+AG+ + ++ +R P+ ++++ A ++ Sbjct: 4 ALQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTN-----PTVAVLWRLANALGVSLTD 58 Query: 72 L 72 Sbjct: 59 F 59 >gi|27377565|ref|NP_769094.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350709|dbj|BAC47719.1| bll2454 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 7/105 (6%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + S KK + R+ ++ L+ + +A G+ P+ N +R R + + + Sbjct: 1 MPAESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQ-----RPVTAQIL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 ++ + + L + PL Sbjct: 56 LRLAETYDLDLRDLATADEDRFFAELNEIFSDPLFRQIDVPKQEL 100 >gi|83952018|ref|ZP_00960750.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837024|gb|EAP76321.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 207 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + + + T A++AGL ++ +K + + P+ E++ K+ Sbjct: 26 NLGQRVRELRKARDWTLEQAAKQAGLARSTLSKIENGQM-----SPTYEALKKLAVGLEI 80 Query: 68 TICQLLDLPFSDG 80 ++ QL P D Sbjct: 81 SVPQLFTAPQKDQ 93 >gi|326383144|ref|ZP_08204833.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL B-59395] gi|326198280|gb|EGD55465.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL B-59395] Length = 469 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 5/90 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + L+ LA G+ + N+ + R + + KI Sbjct: 3 VGGRIRGLRADRALSQQALAAMLGISASYLNQIEHDN-----RPLTGPVLAKITEMFGLD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 I ++ L F P+ Sbjct: 58 IDFFDPQDDVRLVAELREALLDEDLDFDPA 87 >gi|315149981|gb|EFT93997.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0012] Length = 86 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + N T + LA K G+ + +++ PS E F I AA + Sbjct: 19 IKNNLKVLRAQKNWTQADLAEKVGISRQAVISIEKYKYT-----PSLELAFDIAAAFKKP 73 Query: 69 ICQLLDLP 76 + ++ Sbjct: 74 VTEVFYQQ 81 >gi|307280502|ref|ZP_07561551.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306504050|gb|EFM73266.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 394 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFDQLESFNPD 64 >gi|306830957|ref|ZP_07464119.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977847|ref|YP_004287563.1| transcriptional regulator cro/C1-type family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426980|gb|EFM30090.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177775|emb|CBZ47819.1| transcriptional regulator cro/C1-type family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 121 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R L + LA+ A + + + +R PS +I N Sbjct: 53 LKNRLKELRARDGLNQTQLAKLAKVSRQTISLLERNEYT-----PSVIIALRIAHIFN 105 >gi|302343975|ref|YP_003808504.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301640588|gb|ADK85910.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 104 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 5/53 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + +T +A G+ + ++ ++ R STE + K+ A Sbjct: 49 VRVLRSHRGMTLQQVADACGVTNSHISQIEKG-----KRSMSTELLKKMAEAL 96 >gi|295696288|ref|YP_003589526.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] gi|295411890|gb|ADG06382.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] Length = 392 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 30/138 (21%), Gaps = 5/138 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + + LA + G+ + P + ++L + E + Sbjct: 13 GRRISERRKALGWSQELLADRLGVSRQFIGALEAGRS--WPSVPVALELARVLGTSVEAL 70 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV--FPTGNKWNTVGVPEIRSPH 127 + E L F + T+ P R+ Sbjct: 71 FDPQEAGEIVWGDPEVGATVGTRLRFARVDEHVVAYPLYGREAASSADGTIS-PAGRAEA 129 Query: 128 NGIYAIQTQDTRHKTQDT 145 ++ D Sbjct: 130 FSPEWVEAADHTVAVAGC 147 >gi|291521395|emb|CBK79688.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 45 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 KI + I + +T + +A K G+ S +K +R Sbjct: 5 KIGKYIAGKRKALGMTQAQVAEKLGMSNKSVSKWERGVS 43 >gi|257884151|ref|ZP_05663804.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819989|gb|EEV47137.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 370 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 35/120 (29%), Gaps = 8/120 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + + +T LA G+ S +K + P + K Sbjct: 1 MEELS---LSKNVANLRKEKGVTQETLAEFIGVTKASVSKWETGQS-----MPDVLILPK 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + ++ +LL + + + F + ++ Sbjct: 53 LASFFDVSVDELLGYHPQLTKEQIRHFYQQWTTAFSEEPFEYVMEDCRKAVKQYYSCYPF 112 >gi|226325895|ref|ZP_03801413.1| hypothetical protein COPCOM_03708 [Coprococcus comes ATCC 27758] gi|225206019|gb|EEG88373.1| hypothetical protein COPCOM_03708 [Coprococcus comes ATCC 27758] Length = 132 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + I + ++ +++ L++ G+ +S K + P+ ++ KI Sbjct: 28 RTEDYIADNIIALCKKRDMSKYRLSQLTGISQSSIGKI-----IAKESLPTMPTVEKICD 82 Query: 64 ATNETICQLLDLPF 77 A T+ Q Sbjct: 83 ALGVTMAQFFAGMD 96 >gi|207722560|ref|YP_002252996.1| phage regulatory protein [Ralstonia solanacearum MolK2] gi|206587742|emb|CAQ18324.1| putative phage regulatory protein [Ralstonia solanacearum MolK2] Length = 136 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 K++ E + + H LT LA G+ + + GR R P Sbjct: 28 KELGERVAEARKAHGLTQQQLAEALGIAQQTLAHYE----VGRARLP 70 >gi|159905237|ref|YP_001548899.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159886730|gb|ABX01667.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 182 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ I + + + +R +L+ L+ G+ + + +R + P+ +I K Sbjct: 1 MKDL-NEVISKNLKTLRKRKDLSLDALSNLTGVSKSMLGQIERGEVN-----PTISTILK 54 Query: 61 ILAATNETI 69 I + Sbjct: 55 ISNGLKVSF 63 >gi|111219639|ref|YP_710433.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a] gi|111147171|emb|CAJ58819.1| Putative HTH-type transcriptional regulator [Frankia alni ACN14a] Length = 139 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ I E NL+ + LA AG+ P + + ++ R + ++ T Sbjct: 18 RLGAHIRTRREELNLSRAALAEAAGISPVTLARIEQQRTV-NPRLFTVAALAATFDTT 74 >gi|32470379|ref|NP_863294.1| hypothetical protein MWP024 [Staphylococcus aureus] gi|49398102|ref|YP_031701.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253730993|ref|ZP_04865158.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208875|ref|ZP_06925281.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913080|ref|ZP_07130516.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|21205830|dbj|BAB96521.1| truncated conserved hypothetical protein [Staphylococcus aureus] gi|49168433|emb|CAG43234.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253725270|gb|EES93999.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|270055309|gb|ACZ58802.1| hypothetical protein SAP032A_013 [Staphylococcus aureus] gi|270055397|gb|ACZ58890.1| hypothetical protein SAP037A_010 [Staphylococcus aureus] gi|270269036|gb|ACZ66028.1| hypothetical protein SAP111A_016 [Staphylococcus aureus] gi|270269153|gb|ACZ66145.1| hypothetical protein SAP043A_012 [Staphylococcus aureus] gi|270299957|gb|ACZ68763.1| hypothetical protein SAP072A_021 [Staphylococcus aureus] gi|281334960|gb|ADA62044.1| hypothetical protein SAP053A_001 [Staphylococcus aureus] gi|296886493|gb|EFH25420.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885633|gb|EFK80842.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|302334349|gb|ADL24541.1| putative bacteriophage CI repressor [Staphylococcus aureus subsp. aureus JKD6159] gi|304388021|gb|ADM29122.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] Length = 113 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ EAI E + LA + S +K + +PS + + + Sbjct: 2 KLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKN-----YPSLDILIAMSDLFGI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 ++ L+ + + F FP Sbjct: 57 SLEHLIKGDARFKKVILEGNYRESNRVPSIVDFLYDFWWLFFPV 100 >gi|325687904|gb|EGD29924.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 94 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + E+ + + +A G + + + + S+ ++ + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENNKTI-----LDSASLIRLADFYQIS 56 Query: 69 ICQLL 73 + +L Sbjct: 57 LDELC 61 >gi|309799725|ref|ZP_07693941.1| signal peptidase I [Streptococcus infantis SK1302] gi|308116641|gb|EFO54101.1| signal peptidase I [Streptococcus infantis SK1302] Length = 204 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISRRGRSIDLMSL 198 + + SM P G+IL + + +N D ++ G+ + K +I G +I S Sbjct: 32 VRVEGHSMDPTLADGEILFVVKHLPINRFDIVVAHEDDGNKDIVKRVIGMPGDTIRYESD 91 >gi|307286630|ref|ZP_07566720.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306502259|gb|EFM71541.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315152691|gb|EFT96707.1| helix-turn-helix protein [Enterococcus faecalis TX0031] Length = 70 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 14/40 (35%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R E L+ + LARK + + + + Sbjct: 5 SNLSRYREEIGLSQTELARKMNVTQQCISSWQTGRTIPKP 44 >gi|300782359|ref|YP_003762650.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299791873|gb|ADJ42248.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 139 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + ++ L++ AG+ ++ +R R PS E + +I Sbjct: 10 DIGEYIRQQRNTAKISLRQLSKLAGVSNPYLSQIERGV-----RKPSAEILQQIAKGLRI 64 Query: 68 T 68 + Sbjct: 65 S 65 >gi|296330586|ref|ZP_06873064.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674634|ref|YP_003866306.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152268|gb|EFG93139.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412878|gb|ADM37997.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 132 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 11/88 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M EAI R+ + T +A G+ + ++ +R + PS + I K Sbjct: 4 MKM------GEAIRRIRKEKKKTLDEVAEAVGITHSYLSRIERN-----LQQPSIQVIEK 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK 88 I L S + +E +++ Sbjct: 53 IADYLGVHKSYLFFDEESLKKYSEPEKQ 80 >gi|295133913|ref|YP_003584589.1| hypothetical protein ZPR_2068 [Zunongwangia profunda SM-A87] gi|294981928|gb|ADF52393.1| membrane protein [Zunongwangia profunda SM-A87] Length = 214 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ + I + LA +GL + + + +R P+ +S+ K+ A Sbjct: 3 NQNLSNRIKNFRILKGFSQEALAEHSGLSVRTIQRMENN-----DRIPNADSLKKVAEAL 57 Query: 66 NETICQ 71 +I + Sbjct: 58 GISIEE 63 >gi|257869745|ref|ZP_05649398.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|309778441|ref|ZP_07673356.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|257803909|gb|EEV32731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|308913804|gb|EFP59629.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 69 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 5/49 (10%), Positives = 16/49 (32%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 H + + + + L+ + LA G+ + + + + Sbjct: 1 MNEHLILKNRLKEVRKEKKLSQTELAEMVGVSRNTISSIETGQFNPTAK 49 >gi|258517094|ref|YP_003193316.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780799|gb|ACV64693.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 181 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + N+ + LA K G+ ++ +R + P E++ +I +A N Sbjct: 2 NIGIRIRELRKNSNINITQLAIKVGISRVYLSELERNI-----KTPPLETLERICSALNI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLY 94 T+ + E + Y Sbjct: 57 TLVDFFTENTLETICNNNYFNESTVPY 83 >gi|253580260|ref|ZP_04857526.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848353|gb|EES76317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 70 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 AI ++T LA G+ + N ++ P+ + KI ++++ Sbjct: 6 AIKVARAEKDMTQKVLAEAVGVSRQTINAIEKGEYN-----PTIKLCRKICRVLDKSLDD 60 >gi|299822098|ref|ZP_07053984.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299815627|gb|EFI82865.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 133 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 5/54 (9%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 ++ ++ T LA + + P++ +K + P + K+ T Sbjct: 27 QLRKKKRFTQKQLAERIDVTPSTISKYEHGT-----HRPPVFILAKLAEELGTT 75 >gi|229196060|ref|ZP_04322812.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] gi|228587442|gb|EEK45508.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] Length = 153 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 36/119 (30%), Gaps = 8/119 (6%) Query: 3 SFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + E + ++ E + +A+K G+ + K + P +++ Sbjct: 1 MLKEGDVMSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----CPDIDNLI 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + N T+ +L+ + E++ G F + + + Sbjct: 56 LLSEMYNVTLDELIKGNQNIKEKIHIDEEDEDFEKENEFGFYIGFGLLIMSAFIDYEKI 114 >gi|227512465|ref|ZP_03942514.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC 11577] gi|227084290|gb|EEI19602.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC 11577] Length = 103 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + +T + L+ K G + N + P+ ++ KIL Sbjct: 7 GEKLRKLRKSRGMTAAELSAKMGFSQSYINHFETDRAV-----PNVNALGKILKYLGTD 60 >gi|256380757|ref|YP_003104417.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925060|gb|ACU40571.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 128 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ L++ AG+ ++ +R R PS E + +I + Sbjct: 16 IGDYIKEQRNSAKISLRQLSKLAGVSNPYLSQIERG-----LRKPSAEILQQIAKGLRIS 70 >gi|217965867|ref|YP_002351545.1| hypothetical protein LMHCC_2596 [Listeria monocytogenes HCC23] gi|217335137|gb|ACK40931.1| conserved domain protein [Listeria monocytogenes HCC23] gi|307569591|emb|CAR82770.1| hypothetical protein lmo4a_0068 [Listeria monocytogenes L99] Length = 67 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K+ E + R ++ + LA+ G+ PT + G+ I K+L Sbjct: 6 KLKELVKIALIRRGISQAELAKTIGISPTYLSDILNENRSGKKVEDIKNQITKLLE 61 >gi|149190536|ref|ZP_01868806.1| hypothetical protein VSAK1_13811 [Vibrio shilonii AK1] gi|148835660|gb|EDL52627.1| hypothetical protein VSAK1_13811 [Vibrio shilonii AK1] Length = 106 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + R + +T +A K G+ ++ + +R R S + K L + Sbjct: 7 IMPILRRFRDLAGITQEQMAVKTGISLSTIKRIERGV-----RSISLDDYHKYLDVLELS 61 Query: 69 ICQ 71 Sbjct: 62 HID 64 >gi|2897107|gb|AAC03458.1| Cro-like regulatory protein [Streptococcus phage TP-J34] Length = 67 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 17/40 (42%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 I + RHNLT A+ G P + + ++ + + Sbjct: 10 IKELRARHNLTQEEFAKSVGTTPQTVSAWEKNQLSISPKN 49 >gi|29376794|ref|NP_815948.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|256960853|ref|ZP_05565024.1| predicted protein [Enterococcus faecalis Merz96] gi|29344259|gb|AAO82018.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256951349|gb|EEU67981.1| predicted protein [Enterococcus faecalis Merz96] Length = 121 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S K + I R NLT LA ++GL + ++ PS E++ + Sbjct: 1 MPEDSLKFLGRHIRAERVRCNLTQQELADQSGLAVKTVQDIEKGRKN-----PSYETLSR 55 Query: 61 ILAATNETIC 70 ++ + Sbjct: 56 LIERLGISPN 65 >gi|328885765|emb|CCA59004.1| regulatory protein [Streptomyces venezuelae ATCC 10712] Length = 306 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 7/63 (11%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + L+ + G+ + ++ +R + + RWP + + ++ A+++ Sbjct: 27 LGIRLAALRKGSGLSLEEAGARVGISKATLSRYER--AKTKVRWPLVDQLCRVYEASDDE 84 Query: 69 ICQ 71 + Sbjct: 85 RLE 87 >gi|324989604|gb|EGC21549.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 74 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESKGMTQQELADHIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|309803453|ref|ZP_07697547.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|309805571|ref|ZP_07699615.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|312870937|ref|ZP_07731042.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312872150|ref|ZP_07732223.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325913375|ref|ZP_08175742.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|308164462|gb|EFO66715.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|308165110|gb|EFO67349.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|311092234|gb|EFQ50605.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311093627|gb|EFQ51966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477301|gb|EGC80446.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 105 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 2/87 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I + + +T S LAR G + + + + K L + Sbjct: 2 NNILGSVIKEIRKDKKITQSELARLTGFKQNTISNHENGKRS--LDECDIYTYAKALNVS 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPL 92 +T D + + + Sbjct: 60 PQTFFDKYTNQDKDILSIYNQLHDERQ 86 >gi|307704576|ref|ZP_07641481.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307621873|gb|EFO00905.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 74 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESIGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|300856445|ref|YP_003781429.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436560|gb|ADK16327.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 ++++ ++H +T LA+K + + + PS FKI N +I Sbjct: 3 NRLEKIRKQHGITQEELAQKLEVSRQTIGSLENGRYN-----PSILLAFKISKFFNVSIE 57 Query: 71 QLLDLPF 77 ++ Sbjct: 58 EIFIYEE 64 >gi|257485767|ref|ZP_05639808.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130289|ref|ZP_07256279.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012863|gb|EGH92919.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 131 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + L+ + LA K G + + +R P E + +I N Sbjct: 18 VGAKIKALRKSSTLSQADLAEKIGCEAPLIGRYERGIT-----LPGIEQLIRIATIFNVA 72 Query: 69 ICQ 71 + Sbjct: 73 PGE 75 >gi|229010434|ref|ZP_04167638.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] gi|228750854|gb|EEM00676.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] Length = 149 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|227495327|ref|ZP_03925643.1| transcriptional regulator [Actinomyces coleocanis DSM 15436] gi|226831197|gb|EEH63580.1| transcriptional regulator [Actinomyces coleocanis DSM 15436] Length = 68 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 4/37 (10%), Positives = 16/37 (43%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 ++ + ++ + L+ LA+ G+ + + + Sbjct: 6 QLKNNLPQVRKEKGLSQQELAKLVGVSRNTISSIETG 42 >gi|307154678|ref|YP_003890062.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984906|gb|ADN16787.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 83 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 2/71 (2%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 KI + I + +T A G+ + N+ + + + I K+ Sbjct: 7 YKLYQPKIGKLIRSIRLELGMTQEQFAAYLGVVYPTVNRWENGHTQ--PSLMALRLIEKL 64 Query: 62 LAATNETICQL 72 L E + Sbjct: 65 LIDLGERGQEF 75 >gi|153954437|ref|YP_001395202.1| hypothetical protein CKL_1812 [Clostridium kluyveri DSM 555] gi|219855028|ref|YP_002472150.1| hypothetical protein CKR_1685 [Clostridium kluyveri NBRC 12016] gi|146347318|gb|EDK33854.1| Hypothetical protein CKL_1812 [Clostridium kluyveri DSM 555] gi|219568752|dbj|BAH06736.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 164 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%) Query: 139 RHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKP--RTGDIVAKVLISRRGRS 192 K SM P D ++++ N GD ++ P + K +I Sbjct: 28 IVKVDGMSMYPTLTDKDRIVVDKYSAMTKDYNYGDIIIFHPYTDNNVLYIKRVIGLPNDK 87 Query: 193 IDL 195 I + Sbjct: 88 ITI 90 >gi|159900885|ref|YP_001547132.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893924|gb|ABX07004.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 1188 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEG 48 H WE + + + L+ +A++ G+ + ++ +R + Sbjct: 671 HTAAWERLVEYRQANGLSQKAVAQRLGVKQAITISQWERGMLRP 714 >gi|167645954|ref|YP_001683617.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348384|gb|ABZ71119.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 69 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E L LA AG+ PT + + R S + + ++ +A Sbjct: 7 VGANVRALREARGLPQDELAHLAGVHPTYLSGVETG-----KRNLSMKVLERLASALRVP 61 Query: 69 ICQ 71 Sbjct: 62 ETD 64 >gi|94992470|ref|YP_600569.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096] gi|94545978|gb|ABF36025.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096] Length = 157 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/154 (8%), Positives = 35/154 (22%), Gaps = 12/154 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + +T S L R ++ + + ++ + + + + Sbjct: 4 GHQLKTVRLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L P++ + K++ + + + + Sbjct: 64 NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123 Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLY 151 Y D SM PL Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPLI 157 >gi|52143615|ref|YP_083215.1| transcriptional regulator [Bacillus cereus E33L] gi|51977084|gb|AAU18634.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 146 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 17/38 (44%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + E + ++ E ++ +A+K G+ + K + Sbjct: 3 LGEQLKKLRESKGISQEDVAKKIGVTRQAVYKWENDKS 40 >gi|41406133|ref|NP_958969.1| hypothetical protein MAP0035 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394481|gb|AAS02352.1| hypothetical protein MAP_0035 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 262 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E + + + LA G+ + +R R P ++ KI Sbjct: 1 MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGA-----RKPHKSTVQKIEN 55 Query: 64 ATN 66 Sbjct: 56 GLG 58 >gi|293550683|ref|ZP_06673350.1| transcriptional regulator [Enterococcus faecium E1039] gi|291603210|gb|EFF33395.1| transcriptional regulator [Enterococcus faecium E1039] Length = 145 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + R+ + H +T LA K + + + + P E++ K+L+ Sbjct: 5 LKRLRKEHGITHENLAEKLHVSRQTISNWENGNT-----LPDIENL-KLLSQFYH 53 >gi|261208044|ref|ZP_05922719.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565525|ref|ZP_06445973.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|260077628|gb|EEW65344.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162723|gb|EFD10575.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] Length = 87 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R + L+ + LA+K + + + + Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 60 >gi|256617058|ref|ZP_05473904.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256596585|gb|EEU15761.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] Length = 87 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R + L+ + LA+K + + + + Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 60 >gi|251788551|ref|YP_003003272.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537172|gb|ACT05793.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 96 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + R+ L+ A A T ++ +R S + + ++ A Sbjct: 26 RISLNLKRLRAEKGLSQEKAAELADFHRTYVSQLERCVTN-----ISIDGLERLAEALGV 80 Query: 68 TICQLLDLPFSDGRTT 83 I +LL +P S + Sbjct: 81 DITELLQIPDSSQADS 96 >gi|257063020|ref|YP_003142692.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790673|gb|ACV21343.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 215 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ + LT LA+ +G+ + + ++ + S E+ I + + Sbjct: 151 NLKRLRKLSGLTQEQLAQLSGISVRTIQQYEQRRKDVNK--ASLETAVAIATVLHCSPSD 208 >gi|229083918|ref|ZP_04216223.1| hypothetical protein bcere0022_5720 [Bacillus cereus Rock3-44] gi|228699399|gb|EEL52079.1| hypothetical protein bcere0022_5720 [Bacillus cereus Rock3-44] Length = 75 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 M S I + + R N T S LA K G+ + ++ Sbjct: 1 MVKLS---ICNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41 >gi|229114588|ref|ZP_04244002.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] gi|228668653|gb|EEL24081.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] Length = 149 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|227484905|ref|ZP_03915221.1| hypothetical protein HMPREF0072_0308 [Anaerococcus lactolyticus ATCC 51172] gi|227237060|gb|EEI87075.1| hypothetical protein HMPREF0072_0308 [Anaerococcus lactolyticus ATCC 51172] Length = 205 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 18/217 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI +AI E N + LA + G + + +R S + +I Sbjct: 2 KIGQAIKYRREELNYSLEYLANRIGKSIPTMYRYERSEN---PDVLSLDVFLEICEILKT 58 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 T ++L + R K P + P S + + V P Sbjct: 59 TPDEILSDVDNYIR---SNAKVFPSVIRVPLFSDDYILEAH--NEDAEFYVPFDN---PS 110 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKG-DILILNSAIQVNC-GDRLLIKPRTGDIVAKVL 185 Y T +K ++T+ P DI+ + + + + ++ + Sbjct: 111 EIPY---KDITAYKIKNTTNFPNCFDKGDIIYICKVKEFEDKKNYIFLREADNKVQLIKA 167 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 + + N V ++ ++++ I ++L S Sbjct: 168 RLLDEGNFLFIDENNK--VIELQHNNLKLIGKLLQIS 202 >gi|188583054|ref|YP_001926499.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346552|gb|ACB81964.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 79 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + R+ L+ LA +D T + +R R S +++ ++ Sbjct: 10 REILATNLRRIRAEKGLSQDALADLCEIDRTYISGVERG-----LRNVSIDTLERLATGL 64 Query: 66 NETIC 70 Sbjct: 65 RLEPW 69 >gi|149916489|ref|ZP_01905006.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149809591|gb|EDM69447.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 435 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I + + S LA+ G+ P+ N + R + +++ K+ Sbjct: 7 IGTRIRERRVMNGIRQSELAKMVGISPSYLNLIEHN-----RRRIAGKTLIKLAEVLE 59 >gi|222053908|ref|YP_002536270.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563197|gb|ACM19169.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 150 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKA--GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI + + +LT LA GLD T K +R + PS + + KI A Sbjct: 4 KIGSRLKMLRMERSLTQKELAVMVSGGLDYTYIGKIERGE-----QLPSLKILLKISDAL 58 >gi|84501143|ref|ZP_00999378.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391210|gb|EAQ03628.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 207 Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + + T AR+AGL ++ +K + + P+ +++ K+ + Sbjct: 27 LGDRVRELRKARDWTLEQAAREAGLARSTLSKIENGQM-----SPTYDALRKLATGLGIS 81 Query: 69 ICQLLDLP 76 + QL P Sbjct: 82 VPQLFTPP 89 >gi|329117486|ref|ZP_08246203.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907891|gb|EGE54805.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 194 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 7/64 (10%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + ++ L+ LA K + + + + +P S+ + Sbjct: 2 ELGKKLSSCRKKAGLSQEDLAEKIYVSRQTISNWENDKS-----YPDIHSLIALANLFQL 56 Query: 68 TICQ 71 ++ Q Sbjct: 57 SLDQ 60 >gi|239983769|ref|ZP_04706293.1| transcriptional regulator [Streptomyces albus J1074] gi|291455574|ref|ZP_06594964.1| transcriptional regulator [Streptomyces albus J1074] gi|291358523|gb|EFE85425.1| transcriptional regulator [Streptomyces albus J1074] Length = 200 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + LA +A L +S ++ + R + + + + A + T Sbjct: 12 VRKRIRALRLAQGWSLEELAGRANLSQSSLSRIENG-----RRRLALDQLVTLARALDTT 66 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + QL++ D + + + +P G G TG + Sbjct: 67 LDQLVETASDDVIISPVIDSARGRMQWPVKGDPGVTVVRQRVTGPPPDNPARMRAHPGRE 126 Query: 129 GIYAIQTQDTRH 140 + + Sbjct: 127 WLVVLSGTAILM 138 >gi|221635639|ref|YP_002523515.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] gi|221157546|gb|ACM06664.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] Length = 506 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 5/122 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + L+ LA +AG+ + + + PS ++ A Sbjct: 140 QLIVRVRERRRSCGLSQQQLAERAGISRQTLVAIEAGRLT-----PSVAVALRLARALGC 194 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + +L + E + P G + +T + Sbjct: 195 AVEELFSFAEPPLLEAQLALSERWTVPIPSRVRLGRVGETFVAWPVRDDTGEAEGMIRER 254 Query: 128 NG 129 G Sbjct: 255 AG 256 >gi|58337201|ref|YP_193786.1| transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227903784|ref|ZP_04021589.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796] gi|58254518|gb|AAV42755.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227868671|gb|EEJ76092.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796] Length = 112 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + I E ++T + LA K+G++ T+ NK ++ R S++ + I Sbjct: 1 MTNQTNLAQKITNYREAQDMTQAELADKSGIERTALNKIEKGT-----RKVSSDELKAIA 55 Query: 63 AATNET 68 A N + Sbjct: 56 LALNIS 61 >gi|85708475|ref|ZP_01039541.1| transcriptional regulator, XRE family protein [Erythrobacter sp. NAP1] gi|85690009|gb|EAQ30012.1| transcriptional regulator, XRE family protein [Erythrobacter sp. NAP1] Length = 445 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + R+ +R LT + +A G+ P+ N +R R Sbjct: 12 LRRLRKREGLTQAAMAASLGISPSYLNLIERNQRPLSAR 50 >gi|146291531|ref|YP_001181955.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563221|gb|ABP74156.1| transcriptional regulator, XRE family [Shewanella putrefaciens CN-32] Length = 188 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 7/112 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + A++ G+ + +R P+ +++KI + N + Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + L+ +K E+ F + + Sbjct: 63 LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFP--FEERFGFEMFEL 112 >gi|119715961|ref|YP_922926.1| peptidase S24, S26A and S26B [Nocardioides sp. JS614] gi|119536622|gb|ABL81239.1| peptidase S24, S26A and S26B [Nocardioides sp. JS614] Length = 113 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV-LISRRGRS----IDLM 196 SM PL GD L+++ G ++ + G + K R R+ L+ Sbjct: 12 VSGRSMTPLLAPGDRLLVSYRRPARPGAVVVARLADGTVAVKRAAQRRTTRTGQAGWWLL 71 Query: 197 SLNCC 201 S N Sbjct: 72 SDNPD 76 >gi|324990830|gb|EGC22765.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 136 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + I + +R N++ LA + G+ + K + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVP 41 >gi|325970299|ref|YP_004246490.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025537|gb|ADY12296.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 122 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 M + S +++ I R+ + ++T LA G+ NK Sbjct: 1 MGTLSFEEVGNTIKRILDEQDMTQQALATAIGVSKQVMNKIVAGNK 46 >gi|322378078|ref|ZP_08052565.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] gi|321281060|gb|EFX58073.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] Length = 108 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 5/80 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I + +T LA + L ++ + R S E+ KI+ A Sbjct: 6 ENISNQIRDLRASKKITQQELAERTNLSVPYISQIENNH-----RNISLETFVKIVDALE 60 Query: 67 ETICQLLDLPFSDGRTTEKK 86 T+ T + Sbjct: 61 VTLSDFFLPYSVPQDTEMME 80 >gi|307710145|ref|ZP_07646589.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619125|gb|EFN98257.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 108 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I + +T LA + L ++ + R S E+ KI+ A Sbjct: 6 ENISNQIRDLRASKKITQQELAERTNLSVPYISQIENNH-----RNISLETFVKIVDALE 60 Query: 67 ETICQLLDLPFSDGRTTEKK 86 + T + Sbjct: 61 VPLSDFFLPYSVPQDTEMME 80 >gi|293380865|ref|ZP_06626901.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] gi|290922538|gb|EFD99504.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] Length = 118 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 5/123 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I + I E LT LA+K + S +K ++ G P + + + Sbjct: 1 MIDIQAIGQRIKSYRENAKLTQDNLAQKLNVSRQSVSKWEKGGS-----LPDIDRLVTMS 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + ++ +L+ + + ++ L F + ++ + + E Sbjct: 56 ELFDISLDKLILGKDKNVQKVVLEKSPSTHLNFGDFLAKYWWIILILLPLIGDAISEIIE 115 Query: 123 IRS 125 S Sbjct: 116 AFS 118 >gi|197303602|ref|ZP_03168640.1| hypothetical protein RUMLAC_02330 [Ruminococcus lactaris ATCC 29176] gi|197297336|gb|EDY31898.1| hypothetical protein RUMLAC_02330 [Ruminococcus lactaris ATCC 29176] Length = 255 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + + L+ LARK + + ++ + P+TE++ + + Sbjct: 2 EVKDIIYGLRVKKGLSQDALARKVMVTRQAVSRWENGETV-----PNTETLKLLSKEFDV 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|182624148|ref|ZP_02951935.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] gi|177910764|gb|EDT73124.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] Length = 141 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 2/50 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + N++ LA++ + + +K + + + + KI Sbjct: 7 LKELRKEKNISQEQLAKELNISRQAISKWESG--KAYPDIDNLILLRKIF 54 >gi|91787958|ref|YP_548910.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91697183|gb|ABE44012.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 207 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 5/117 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + +I + + + +L+ LA G+ + + +R P+ + K+ Sbjct: 17 NDRIAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGES-----SPTAVLLEKLATGL 71 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 N + L + P + + + + V P Sbjct: 72 NVPLASLFEAPQPTKDPVARLADQPSWRDPHSGYVRRNVSPSGVASPIQIVEVSFPA 128 >gi|15597508|ref|NP_251002.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116050256|ref|YP_790927.1| XRE family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891714|ref|YP_002440581.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254240751|ref|ZP_04934073.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192] gi|9948345|gb|AAG05700.1|AE004657_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115585477|gb|ABJ11492.1| putative transcriptional regulator, XRE family [Pseudomonas aeruginosa UCBPP-PA14] gi|126194129|gb|EAZ58192.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192] gi|218771940|emb|CAW27719.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 193 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 5/108 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +++ + R+ + NL+ LAR +G+ + + PS + + KI Sbjct: 7 DLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSV-----PSIKVLCKIA 61 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 ++ LD G ++ L+ + + Sbjct: 62 QGLKVSVAAFLDDRAFAGVAVLPAQQSKRLVSADGAFTSRALFPFDVA 109 >gi|22855028|ref|NP_690788.1| hypothetical protein phi105_35 [Bacillus phage phi105] gi|4126641|dbj|BAA36661.1| unnamed protein product [Bacteriophage phi-105] Length = 92 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K+ I + +L + +A+ G+ T + + PST+++ + Sbjct: 1 MLDGKKLKLGALIKDKRKEKHLKQTEMAKALGMSRTYLSDIENGRY-----LPSTKTLSR 55 Query: 61 IL 62 I Sbjct: 56 IA 57 >gi|107101758|ref|ZP_01365676.1| hypothetical protein PaerPA_01002802 [Pseudomonas aeruginosa PACS2] gi|296389278|ref|ZP_06878753.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110791|ref|ZP_07796645.1| putative transcriptional regulator, XRE family [Pseudomonas aeruginosa 39016] gi|310883147|gb|EFQ41741.1| putative transcriptional regulator, XRE family [Pseudomonas aeruginosa 39016] Length = 210 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 5/108 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +++ + R+ + NL+ LAR +G+ + + PS + + KI Sbjct: 24 DLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSV-----PSIKVLCKIA 78 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 ++ LD G ++ L+ + + Sbjct: 79 QGLKVSVAAFLDDRAFAGVAVLPAQQSKRLVSADGAFTSRALFPFDVA 126 >gi|183217341|gb|ACC59260.1| antitoxin PezA [Streptococcus pneumoniae] Length = 158 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 6/138 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ + + +I ++ + G + P I Sbjct: 57 YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116 Query: 128 NGIYAIQTQDTRHKTQDT 145 + I T +T D Sbjct: 117 DLSDLIHTNIYLVETFDE 134 >gi|315302906|ref|ZP_07873642.1| signal peptidase I [Listeria ivanovii FSL F6-596] gi|313628720|gb|EFR97117.1| signal peptidase I [Listeria ivanovii FSL F6-596] Length = 181 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM+P D +I+N V+ D ++ + G K +I G +++ + Sbjct: 35 ILVDGISMMPTLHNDDRVIINRFGHVDRFDVIVFRENDGKEYIKRVIGLPGDTVEYKAD 93 >gi|302672180|ref|YP_003832140.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396653|gb|ADL35558.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 119 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I ++ E+ ++ S + GL ++ + K + PS + I I A + T Sbjct: 3 ISERIFKILEQRGISQSAFGKMVGLSGSTISDWK-----TKKTNPSADKIMTICDALDIT 57 Query: 69 ICQ 71 Q Sbjct: 58 PEQ 60 >gi|298250551|ref|ZP_06974355.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297548555|gb|EFH82422.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 376 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 39/160 (24%), Gaps = 8/160 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN--RWPSTESIFKILAATNETIC 70 + + + + LA++ G P + + +R R + K A N Sbjct: 27 LKKERTIRGWSQAMLAQELGTTPNTISAWERDVSMPSPYFRTKLCALLGKNAAELNLVEE 86 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP--SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L + +T + Y S NTV P P Sbjct: 87 DLEPATLNQWKTEPSPIASEDITYPKQNISPENSAILPSSREVQEVENTVTYPS--FPRR 144 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 + + + G +L + + Sbjct: 145 KWFTGKRALFAL--VCCLLALSITVGLVLYVIPGLHAEKN 182 >gi|295110847|emb|CBL24800.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 255 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 5/51 (9%), Positives = 16/51 (31%), Gaps = 2/51 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + ++ LA K + + ++ + + K+ Sbjct: 7 ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKL--LSKVFD 55 >gi|295134629|ref|YP_003585305.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294982644|gb|ADF53109.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 144 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T SH I I R+ E + LA + G+ S + ++ E + K+ Sbjct: 11 TKTSH--IGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSE------HIEDEKLEKV 62 Query: 62 LAATNETICQLLDLPF 77 + + + Sbjct: 63 AKVLGVSKEAIENFSE 78 >gi|294623869|ref|ZP_06702697.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|291596823|gb|EFF28046.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] Length = 394 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKERRNEYGVSQNKLATACGLSRPYLNQIENGGVIA-----STKTMRKIFDQLESFNPD 64 >gi|289640812|ref|ZP_06472983.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289509388|gb|EFD30316.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 98 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ A+ + +R + + LAR AG+ ++ + + G P + + L Sbjct: 32 ELGRAVRELRQRRAWSQAELARTAGMTQSAVARFEAGGTV--PTLPVLGRLAEALD 85 >gi|264678072|ref|YP_003277979.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262208585|gb|ACY32683.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 139 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 I + + E+ L+ LA + G+ S + R P + ++ Sbjct: 18 NIATRLKEVREQLGLSQQALAERCGVSARSQRNYESGE-----RLPDAAYLAEL 66 >gi|257882474|ref|ZP_05662127.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257818132|gb|EEV45460.1| transcriptional regulator [Enterococcus faecium 1,231,502] Length = 394 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKERRNEYGVSQNKLATACGLSRPYLNQIENGGVIA-----STKTMRKIFDQLESFNPD 64 >gi|229012522|ref|ZP_04169696.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048] gi|228748682|gb|EEL98533.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048] Length = 242 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 21/201 (10%), Positives = 60/201 (29%), Gaps = 14/201 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + +T LA G+ S +K + +P + + + N + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I +L+ + K F T ++ + Sbjct: 61 IDELICYTPQMKQEDIKNLYHRLAEAFSEEPFDEVMMECREVTKKYYSCFPLLIQMGLLF 120 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 + + T+D + + + + + + + L+ + + ++++R Sbjct: 121 INHHMLTEDMDRRI-------EILEEAMYLFSRVQEESDDVSLVKEAASFQATCYLILNR 173 Query: 189 RGRSIDLMSLN--CCYPVDTV 207 + L+ +P + + Sbjct: 174 PNEVLQLLGETIRPNFPEEDL 194 >gi|229016335|ref|ZP_04173281.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] gi|229022576|ref|ZP_04179104.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228738725|gb|EEL89193.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228744982|gb|EEL95038.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] Length = 149 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKIYVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + K++ + Sbjct: 60 ELLRSDEELTQKVIADSKQLAYPKW 84 >gi|218677991|ref|ZP_03525888.1| XRE family transcriptional regulator [Rhizobium etli CIAT 894] Length = 182 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + + R NL LA ++G+ ++ + +R + PS +++ +L A Sbjct: 3 KIGSKLHELRRRRNLGVRELAARSGISHSTISLIERDKM-----SPSIDTLSAVLEALGT 57 Query: 68 TICQLL 73 T+ Sbjct: 58 TMPGFF 63 >gi|218290726|ref|ZP_03494808.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239264|gb|EED06463.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 73 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ LT LA+++GL P+ G + PS +++ KI A + L Sbjct: 5 VREARQQRGLTIYELAKRSGLAPSFVWNL----DHGNIKSPSIQTLSKIAKALGCEVTDL 60 Query: 73 LDLPFSDGRTTEK 85 + + Sbjct: 61 YEDDEEVTKRERA 73 >gi|218290717|ref|ZP_03494799.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239255|gb|EED06454.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 77 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + KI I + +T LA G+ S + + R S ++ + Sbjct: 1 MRNLDPVKIGSRIRSARQSKGMTVESLANAIGISKGSLSAIETG-----KRPVSLLNLTR 55 Query: 61 ILAATNET 68 I + + Sbjct: 56 ISDVLDIS 63 >gi|191638861|ref|YP_001988027.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190713163|emb|CAQ67169.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327382909|gb|AEA54385.1| hypothetical protein LC2W_2053 [Lactobacillus casei LC2W] gi|327386093|gb|AEA57567.1| hypothetical protein LCBD_2071 [Lactobacillus casei BD-II] Length = 344 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 5/96 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I LT LA K G+ + + ++ +P + + Sbjct: 3 IDQVIRERRLALGLTQEELANKIGVSAPAVSIWEKGVS-----YPDITLLPALARILGTD 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + LL + + E + +G Sbjct: 58 VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93 >gi|146341478|ref|YP_001206526.1| transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194284|emb|CAL78306.1| putative transcriptional regulator, with HTH domain (N-terminal) and a RmlC-like cupin domain (C-terminal) [Bradyrhizobium sp. ORS278] Length = 221 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 16/192 (8%), Positives = 44/192 (22%), Gaps = 34/192 (17%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H ++ + + + LT +A K G+ ++ +K + + + + + ++ + Sbjct: 14 HSQLGQCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLM-----SLTYDKLLQLTSGL 68 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPL---------------LYFPPSGSGGFFDSGVFP 110 I +L + + + G + Sbjct: 69 QMDIAELFSPAAPRPEPGRPVTARRSVSRAGQGQIVSTKFYTYTYQCTDLIGKRMVPMIT 128 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + Y + T+ P GD Sbjct: 129 EVRARTLDEFGPLLRHSGEEYFLVTRG-TIAVHTEFYAPEILHE-------------GDG 174 Query: 171 LLIKPRTGDIVA 182 + + G Sbjct: 175 IYLDSTMGHAYL 186 >gi|319428175|gb|ADV56249.1| DNA polymerase V subunit, UmuD [Shewanella putrefaciens 200] Length = 142 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 12/127 (9%) Query: 101 GGFFDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 + FP P S + + + SM+ Sbjct: 1 MSIYPLIPFPAHAGITGFESPAAQYAKAGLSLDELLILHPSTTWIGVAKGDSMIGEGIFD 60 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDI 212 GD+LI++ I ++ + G+ V K+L L+S N Y + + Sbjct: 61 GDLLIVDRDIIAENNSVIVARLN-GEFVCKILDK---NRRMLLSSNEKYQAVPIHEYDEF 116 Query: 213 EWIARIL 219 ++ Sbjct: 117 SVEGVVI 123 >gi|160878226|ref|YP_001557194.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426892|gb|ABX40455.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 273 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 12/129 (9%), Positives = 34/129 (26%), Gaps = 11/129 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + L+ LA + + S +K + P + + ++ Sbjct: 7 LIELRRERGLSQEQLADQLDVSRQSVSKWESDQT-----MPELSKLITLSEIFEVSL-DY 60 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L + R+ +++K+ + + S + + P Y Sbjct: 61 LMRDYIMDRSGTREKKDNTVDDKDIPNRENRYSSLETQINEINDYIKRPRG-----FEYK 115 Query: 133 IQTQDTRHK 141 + Sbjct: 116 SKKTLFGLP 124 >gi|37676355|ref|NP_936751.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37200897|dbj|BAC96721.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 232 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 13/177 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + R +T +++ GL ++ +K + I P+ +++ K+ Sbjct: 52 KLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLKI 106 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + QL + P T + N +P H Sbjct: 107 DMPQLFEPPRKKVATGRRDITLAGQ----GKPHPTQTYEHELLATQLSNKKMMPFKSVVH 162 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVA 182 + + L + V GD + G ++ Sbjct: 163 ARTFEEYGD--WVRHDGEEFLLILSGAVQFYSEFYEPVVLSEGDSVYYDANMGHMLV 217 >gi|332994215|gb|AEF04270.1| putative prophage repressor [Alteromonas sp. SN2] Length = 137 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%) Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 Q SM+ GD+LI++ A ++ ++ G+ V K + R G Sbjct: 38 PAATFIGYAQGKSMMDDGIHDGDLLIVSRAEDISDMCIIV-ATLNGEFVCKRVDKRHG-- 94 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219 L S + Y ++ D I ++ Sbjct: 95 -CLRSSSPLYKPYFLKEGDEFSIEGVV 120 >gi|332797145|ref|YP_004458645.1| XRE family transcriptional regulator [Acidianus hospitalis W1] gi|332694880|gb|AEE94347.1| transcriptional regulator, XRE family [Acidianus hospitalis W1] Length = 238 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I ++ + E ++ S LAR G+ T +R R P + + K + Sbjct: 23 NIGLSMKKWREMFGISQSELARVLGISQTVIADYERG-----RRQPGSAFVKKFVQGL 75 >gi|324020661|gb|EGB89880.1| toxin-antitoxin system, antitoxin component, Xre domain protein [Escherichia coli MS 117-3] Length = 140 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 8/113 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + M E+ LT S LA + GL P++ ++ + P I ++ Sbjct: 34 EIVEMLYEMREKAGLTKSALAERMGLRPSAISRLES--------NPYQTDIPRVFLQPVH 85 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + T E+ F + + Sbjct: 86 IQPRYGTPVYHPAATQHAFERVTTQELFHHLCIAHIRHRFWHTLCAGITVLSL 138 >gi|258592092|emb|CBE68397.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 410 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 16/177 (9%), Positives = 39/177 (22%), Gaps = 11/177 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + E L LA G+ + ++ + R E + KI Sbjct: 10 GARLREAREARGLPAIALADLIGVTRAAVSQYENSVQTPRP-----EVMEKIARTLQLPQ 64 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 R + + + V P + P Sbjct: 65 EYFRRPISRIERGAIFYRSMSAATKAARARAECRYSWLREIVTYLREFVQFPPMNIPDFN 124 Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV----NCGDRLLIKPRTGDIVA 182 + + + ++ + R+ + V ++++ G Sbjct: 125 LPDDPVRISYNQI--EELATQSRQFWKIGEGPIGNVVRLLENNGIVVVRDELGAETL 179 >gi|257439368|ref|ZP_05615123.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198243|gb|EEU96527.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 86 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ + L+ S LA AG++ + K ++ + +T + +I A + + Sbjct: 12 EKLQKLRQAAGLSQSQLAEAAGVNVRMYQKYEQGDRDISKAQLTT--LLRICKALSCKLS 69 Query: 71 QLLDLPF 77 ++ Sbjct: 70 DIVTDAE 76 >gi|255974915|ref|ZP_05425501.1| predicted protein [Enterococcus faecalis T2] gi|257421700|ref|ZP_05598690.1| predicted protein [Enterococcus faecalis X98] gi|255967787|gb|EET98409.1| predicted protein [Enterococcus faecalis T2] gi|257163524|gb|EEU93484.1| predicted protein [Enterococcus faecalis X98] Length = 81 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +T LA+K G+ + + R ++ KI A T+ + Sbjct: 12 IYDLRREKRMTQKELAKKTGITERTIINYEN--SIDALRNAKYSTVEKIATALGVTVDDI 69 Query: 73 L 73 Sbjct: 70 F 70 >gi|254805385|ref|YP_003083606.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254668927|emb|CBA07148.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254670077|emb|CBA04959.1| transcriptional regulator [Neisseria meningitidis alpha153] gi|254672200|emb|CBA05097.1| transcriptional regulator [Neisseria meningitidis alpha275] Length = 126 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 2/84 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + + LA L ++ +R G+ I L Sbjct: 22 IGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGV--GKINISHLVDIAVFLETPIAW 79 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 Q T + E Sbjct: 80 FFQDCLPKPLTVACTPENTPEQQW 103 >gi|221632745|ref|YP_002521967.1| Helix-turn-helix domain-containing protein [Thermomicrobium roseum DSM 5159] gi|221156190|gb|ACM05317.1| Helix-turn-helix domain protein [Thermomicrobium roseum DSM 5159] Length = 154 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R E L+ S LA++AG D + ++ + R P+ E+I ++ A Sbjct: 8 LRRYRESARLSQSRLAQRAGFDHSYVSRLESG-----RRAPTREAILRLAEALELGPADR 62 >gi|154498829|ref|ZP_02037207.1| hypothetical protein BACCAP_02820 [Bacteroides capillosus ATCC 29799] gi|150272219|gb|EDM99423.1| hypothetical protein BACCAP_02820 [Bacteroides capillosus ATCC 29799] Length = 307 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 MT F H + + R T LA G+ + +K + Sbjct: 1 MTHFEH-----NLPILRRRAGYTQESLAEALGVSRQAVSKWESGQT 41 >gi|170732473|ref|YP_001764420.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254245889|ref|ZP_04939210.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184] gi|124870665|gb|EAY62381.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184] gi|169815715|gb|ACA90298.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 221 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 7/120 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA ++G+ + + +R P+ + K+ A Sbjct: 30 NERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASA-----SPTAIVLDKLAAGL 84 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEI 123 ++ L D + + P+ + +P+ + V P Sbjct: 85 GVSLAALFGGDRGDAPAQPLARRAQQAEWRDPASGYVRRNLSPAGWPSPIQLVEVDFPPG 144 >gi|95929475|ref|ZP_01312218.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95134591|gb|EAT16247.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 307 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 9/134 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 AI + E +LT +A+ G+ + ++ + R P+ E + + L + I Sbjct: 17 GAAIRQAREDQSLTQLYVAKMVGVTTDTISRWENNRYPTIKR-PNAEKLAEALEVPLDQI 75 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + + + ++ W P + Sbjct: 76 LWQEEEVPQPQTRSWGLSRRWLIVVLSLCLLVVGLT--------VWLWPQPPIVAERVLP 127 Query: 130 IYAIQTQDTRHKTQ 143 YA + + Sbjct: 128 SYAAPGAVFPVQLR 141 >gi|261207839|ref|ZP_05922524.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566390|ref|ZP_06446818.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|83940994|gb|ABC48899.1| hypothetical protein [Enterococcus faecium] gi|260078222|gb|EEW65928.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161828|gb|EFD09700.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 122 Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K I + I + N T +A + G+ P + + S ++ I + Sbjct: 6 KAIGKRIKIARIKKNFTQEAVADRIGVSPQHVSNIETGNS-----SVSLPTLVAIANMLS 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ +LL + ++E + Sbjct: 61 VSVDELLCDTVLTSKPIFEREAKDIFE 87 >gi|332366465|gb|EGJ44213.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 94 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + E+ + + +A G + + + + S+ ++ + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTI-----LDSASLIRLADFYQIS 56 Query: 69 ICQLL 73 + +L Sbjct: 57 LDELC 61 >gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] Length = 126 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 9/65 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +++ I + LT L G+ ++ K + P E++ K Sbjct: 1 MPTYTGD----MIRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQN-----PKIETLQK 51 Query: 61 ILAAT 65 I A Sbjct: 52 IADAL 56 >gi|327474019|gb|EGF19432.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 94 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + E+ + + +A G + + + + S+ ++ + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTI-----LDSASLIRLADFYQIS 56 Query: 69 ICQLL 73 + +L Sbjct: 57 LDELC 61 >gi|266622653|ref|ZP_06115588.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288865608|gb|EFC97906.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 195 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 16/39 (41%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 K+ I + + LT +A G+ + +K +R Sbjct: 5 KVGRLILQFRKEKGLTQQQVADLLGISNKTVSKWERGLG 43 >gi|254819085|ref|ZP_05224086.1| helix-turn-helix domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length = 263 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E + + + LA G+ + +R R P ++ KI Sbjct: 1 MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSFLERGA-----RKPHKSTVQKIEN 55 Query: 64 ATN 66 Sbjct: 56 GLG 58 >gi|239905667|ref|YP_002952406.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239795531|dbj|BAH74520.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 108 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + ++T LA +AGL S + +R G + E + L ++ Sbjct: 9 GKRVRSLRRAKDMTQEQLAERAGLSLQSVGEIERGR--GNPTLVNIERLSAALEEDLASL 66 Query: 70 CQ 71 Sbjct: 67 FD 68 >gi|307067495|ref|YP_003876461.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|306409032|gb|ADM84459.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 156 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ + I ++ T ++ GLD T + R S E+I KI Sbjct: 4 KELGQEIRKLRTARGFTQETFSKACGLDRTYIADVELG-----KRNISIENIDKIAKGLA 58 Query: 67 ETICQLLDLPFSDGR 81 T+ +L + Sbjct: 59 ITLPELFKFNSPIQK 73 >gi|261409020|ref|YP_003245261.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285483|gb|ACX67454.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 121 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 6/114 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I++ I+ + E +T G+ +F KR PST + +I A + Sbjct: 2 QSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTT-----PSTNKLIEIAAFFS 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L+ S ++ E + + + + Sbjct: 57 VSLDWLIIGRGSPTSRVKEARGEYEVDPESLDPALMSGLAEHEK-EFIREYIEF 109 >gi|163748288|ref|ZP_02155574.1| transcriptional regulator, XRE family protein [Oceanibulbus indolifex HEL-45] gi|161378438|gb|EDQ02921.1| transcriptional regulator, XRE family protein [Oceanibulbus indolifex HEL-45] Length = 83 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 1 MTSF--SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M+ + +++ I R ++ T LA +AGL + + + + E+I Sbjct: 1 MSDLARTSRQVGTLIQRARKKRAWTQMKLAERAGLRQATISMIEHGEKPAK-----LETI 55 Query: 59 FKILAAT 65 ILAA Sbjct: 56 LAILAAL 62 >gi|149924308|ref|ZP_01912679.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] gi|149814844|gb|EDM74411.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] Length = 494 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 5/72 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + +T + LAR+ G+ + N + R E + + Sbjct: 14 NNLGSKVRAKRRARGMTQAELARRLGISASYLNLIEHNQ-----RPLRAELLLSLAREFG 68 Query: 67 ETICQLLDLPFS 78 + Sbjct: 69 LGLDDFASDDDH 80 >gi|148256143|ref|YP_001240728.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408316|gb|ABQ36822.1| putative transcriptional regulator, with HTH domain and a RmlC-like cupin domain [Bradyrhizobium sp. BTAi1] Length = 222 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 16/192 (8%), Positives = 43/192 (22%), Gaps = 34/192 (17%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H ++ + + LT +A K G+ ++ +K + + + + + ++ + Sbjct: 15 HSQLGHCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLM-----SLTYDKLLQLTSGL 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPL---------------LYFPPSGSGGFFDSGVFP 110 I +L + + + G + Sbjct: 70 QMDIAELFSPAAPRPEPGRPVTARRSISRAGQGQVVNTRFYTYVYQCTDLIGKRMVPMIT 129 Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + Y + T+ P GD Sbjct: 130 EVRARTLDEFGPLLRHSGEEYFLVTRG-TIAVHTEFYAPEILHE-------------GDG 175 Query: 171 LLIKPRTGDIVA 182 + + G Sbjct: 176 IYLDSTMGHAYL 187 >gi|69245870|ref|ZP_00603687.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256853747|ref|ZP_05559112.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257879179|ref|ZP_05658832.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257882002|ref|ZP_05661655.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|68195572|gb|EAN10014.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256710690|gb|EEU25733.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257813407|gb|EEV42165.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817660|gb|EEV44988.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] Length = 87 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R + L+ + LA+K + + + + Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 60 >gi|322516911|ref|ZP_08069808.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124534|gb|EFX96016.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 158 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTT 83 ++ Sbjct: 57 YVDIVGEDKMLNPVE 71 >gi|319945801|ref|ZP_08020052.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|322387055|ref|ZP_08060666.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|319748161|gb|EFW00404.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|321142042|gb|EFX37536.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 148 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + + LT ++ G+ ++++ + +E P E + K+ T Sbjct: 10 ERLKTLRKSKKLTQVQISELIGVQQGTYSRWENGTLE-----PGLEFVVKLANIFGTT 62 >gi|315169255|gb|EFU13272.1| helix-turn-helix protein [Enterococcus faecalis TX1341] Length = 154 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 3/92 (3%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +K + E I R+ N T L+ KA + + NK R P ++ +I Sbjct: 1 MKNKIVSENIGRLIRDRNFTQKELSSKANISRNTINKL---SSTKRENNPKLSTLIEISK 57 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + QL + T ++ L Sbjct: 58 VLDVDFPQLFSRNINMKSTYDRDMNLESYLNI 89 >gi|317055585|ref|YP_004104052.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447854|gb|ADU21418.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 313 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 16/34 (47%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 I I ++ + ++T LA G+ + ++ + Sbjct: 4 IGSTIRQLRQEQDITQEQLAEALGITSRAVSQWE 37 >gi|262282360|ref|ZP_06060128.1| predicted protein [Streptococcus sp. 2_1_36FAA] gi|262261651|gb|EEY80349.1| predicted protein [Streptococcus sp. 2_1_36FAA] Length = 96 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 5/73 (6%), Positives = 23/73 (31%), Gaps = 10/73 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + E+ + + ++ G + + + + S+ + Sbjct: 1 MQML-----GKQLKLLREQKGYSQNQISEYLGTTRQTISNWENDKTI-----IDSHSLIR 50 Query: 61 ILAATNETICQLL 73 + ++ +L Sbjct: 51 LADFYQISLDELC 63 >gi|227553860|ref|ZP_03983907.1| conserved hypothetical protein [Enterococcus faecalis HH22] gi|227177015|gb|EEI57987.1| conserved hypothetical protein [Enterococcus faecalis HH22] Length = 108 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFNQLESFNPD 64 >gi|222151155|ref|YP_002560309.1| Cro/CI family transcriptional regulator homolog [Macrococcus caseolyticus JCSC5402] gi|222120278|dbj|BAH17613.1| Cro/CI family transcriptional regulator homolog [Macrococcus caseolyticus JCSC5402] Length = 111 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S+ +I I ++ + L+R+ G+ ++ ++ + R Sbjct: 1 MRSNDEIINIISTELSNKGMSAAELSRRVGIAKSALSRYLN-----KTREFPLNKAEDFA 55 Query: 63 AATNET 68 A + + Sbjct: 56 NALDIS 61 >gi|297198135|ref|ZP_06915532.1| transcriptional regulatory protein [Streptomyces sviceus ATCC 29083] gi|197714170|gb|EDY58204.1| transcriptional regulatory protein [Streptomyces sviceus ATCC 29083] Length = 201 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 6/124 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS ++ KI A Sbjct: 20 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 74 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125 +I LLD E+ + L + P W+ +P S Sbjct: 75 ISITTLLDYEQGPKVRIVPAEQAVRLWHTDAGSYNRLLAGAEAPGPLEMWDWRLMPGESS 134 Query: 126 PHNG 129 P + Sbjct: 135 PSDP 138 >gi|170783094|ref|YP_001711428.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157664|emb|CAQ02865.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 153 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + E + R+ L+ LA G+ + + R PS E++ ++ A Sbjct: 1 MSDASVGEELRRLRREAALSQRELAAVTGVPQPNIAAYESG-----RRQPSPETLVRLGA 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 A + + + + F Sbjct: 56 ALRAPSLDRVRASRGPILEVAARRRLSDVRVF 87 >gi|322389322|ref|ZP_08062881.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] gi|321143986|gb|EFX39405.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] Length = 291 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ ++ LA K G+ + K + P E+I I N +I Sbjct: 5 EKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGI-----PDIENIISISNLFNISID 59 Query: 71 QLLDLPF 77 +L+ Sbjct: 60 ELICNER 66 >gi|301018664|ref|ZP_07182991.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 69-1] gi|300399610|gb|EFJ83148.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 69-1] Length = 88 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 21/40 (52%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 S ++ A+ + +++ T SGLA+K G+ + + + Sbjct: 9 SPTQLANAMKLVRQQNGWTQSGLAKKIGIKQATISNFENN 48 >gi|294620464|ref|ZP_06699773.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|291593377|gb|EFF24942.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] Length = 394 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKERRNEYGVSQNKLATACGLSRPYLNQIENGGVIA-----STKTMRKIFDQLESFNPD 64 >gi|291301766|ref|YP_003513044.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570986|gb|ADD43951.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 80 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++ I+ I + ++ LA G+ + +R PS +I Sbjct: 5 NEVIYNRIAMLRAERGISRRQLAEALGVHYQTIGYLERGEY-----SPSLYLALRIAQYF 59 Query: 66 N 66 Sbjct: 60 E 60 >gi|229095638|ref|ZP_04226619.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] gi|228687770|gb|EEL41667.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] Length = 149 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|300767936|ref|ZP_07077844.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494477|gb|EFK29637.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 128 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 7/62 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + A+++ LT + +A AGL ++ K+ PS ++ ++ Sbjct: 13 ELLKNIRQFAKKNGLTLAEVATLAGLSASAIYSWKKHT-------PSVGTLKEVAQVLGT 65 Query: 68 TI 69 + Sbjct: 66 SY 67 >gi|254976683|ref|ZP_05273155.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255094066|ref|ZP_05323544.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255315817|ref|ZP_05357400.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255518478|ref|ZP_05386154.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255651598|ref|ZP_05398500.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|306521406|ref|ZP_07407753.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 45 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 16/41 (39%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 I E + + + H T LA K + S K + + + Sbjct: 2 INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGVSQTK 42 >gi|225571103|ref|ZP_03780120.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM 15053] gi|225160184|gb|EEG72803.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM 15053] Length = 63 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I ++ + L LA ++G+ + + P+ E K+ + T+ Sbjct: 3 NNIKQLRKSRGLRQEDLAARSGVSRQTIIAIENDKYN-----PTLELAMKLARLLDTTVE 57 Query: 71 Q 71 + Sbjct: 58 E 58 >gi|222152322|ref|YP_002561497.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113133|emb|CAR40543.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 67 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + + H ++ + LA + + ++ S E FK+ N +I Sbjct: 3 NRIQELRKEHKISQAELAEAMEVTRQTIISLEKGRYNA-----SLELAFKLATYFNLSIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DIFIYKE 64 >gi|212710089|ref|ZP_03318217.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] gi|212687296|gb|EEB46824.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] Length = 94 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 5/86 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K + I ++ + + LT + +A + F++ +R +S+ I Sbjct: 14 KIVGSRIKKLRKEYGLTGTEIAAYLNVSQQQFSRYERGINR-----IDIDSLVMIADFFK 68 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL 92 +I + + E L Sbjct: 69 ISIHYFFEDISTVQINNWTVNTETYL 94 >gi|254420939|ref|ZP_05034663.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196187116|gb|EDX82092.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 476 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + R+ LT + +A G+ P+ N +R R S + + ++ Sbjct: 11 LGARLKRLRRDLALTQTAMAADLGVSPSYLNHIERNQ-----RPVSAQLLLRLAE 60 >gi|157150934|ref|YP_001450194.1| Cro/CI family transcriptional regulator putative [Streptococcus gordonii str. Challis substr. CH1] gi|262282528|ref|ZP_06060296.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|157075728|gb|ABV10411.1| transcriptional regulator, Cro/CI family, putative [Streptococcus gordonii str. Challis substr. CH1] gi|262261819|gb|EEY80517.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 136 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I + I + +R N++ LA + G+ + K + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVP 41 >gi|114766945|ref|ZP_01445865.1| hypothetical protein 1100011001299_R2601_23885 [Pelagibaca bermudensis HTCC2601] gi|114540852|gb|EAU43914.1| hypothetical protein R2601_23885 [Roseovarius sp. HTCC2601] Length = 145 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 15/120 (12%) Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--- 163 P + + P++ P Y + + SM P++ GD+L Sbjct: 21 AHVPVFDAYEKGDGPQVECPPGLSY---NGVVAVEVEGDSMEPVFSAGDLLFYTRDTHDG 77 Query: 164 --QVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218 G R +++ +G K + +L+SLN D++ W AR+ Sbjct: 78 VPDDVIGHRCVVEDASGMGWVKQVKLGSEPGLFNLISLNPSADNMH----DVKLNWAARV 133 >gi|110800378|ref|YP_696991.1| putative transcriptional regulator [Clostridium perfringens ATCC 13124] gi|110675025|gb|ABG84012.1| putative transcriptional regulator [Clostridium perfringens ATCC 13124] Length = 127 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + I + + LA+ + P N + + + E + K Sbjct: 1 MSKLINNA-GNLIRSKRKEKGYSTQELAKLLNVSPGLINNIENGKTD----TFNLELLHK 55 Query: 61 ILAATNET 68 I N + Sbjct: 56 ISDILNIS 63 >gi|26988905|ref|NP_744330.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983715|gb|AAN67794.1|AE016410_10 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313499699|gb|ADR61065.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 184 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 44/173 (25%), Gaps = 14/173 (8%) Query: 3 SFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 H++I I + + LT LA++ G ++ +R P+ + Sbjct: 1 MKVHEEIEGLAVLIRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSR-----PTVADLT 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 I + L + E L+ + + + ++ Sbjct: 56 AISEELGVSTAYFYKLDKPRELDWVTRPHERRTLHLAGGITDVLASPSITGAFSMLDSHL 115 Query: 120 VPEIRSPHNGI-YAIQTQDTRHKTQ-----DTSMLPLYRKGDILILNSAIQVN 166 P S + + + + + + D L + Sbjct: 116 QPGASSGEEYLDDSSEQGCFVLEGELTVWLGDAEPVTLHANDSFQLQPHARFR 168 >gi|322375624|ref|ZP_08050136.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] gi|321279332|gb|EFX56373.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] Length = 152 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 8/70 (11%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + ++ +T +A G+ F K + + + ++ ++ + Sbjct: 1 MNRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQ-----ITLKNAAQLADYFGVPL 55 Query: 70 CQLLDLPFSD 79 LL+ Sbjct: 56 SYLLNQEEEW 65 >gi|330399583|ref|YP_004030681.1| hypothetical protein RBRH_00758 [Burkholderia rhizoxinica HKI 454] gi|312170320|emb|CBW77359.1| unnamed protein product [Burkholderia rhizoxinica HKI 454] Length = 159 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 4/105 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I A+ + +LT + LAR AGL + N+ + G+ + + +L+ Sbjct: 5 EIGWAVAKRRTELDLTQAQLARLAGLSRFTVNQLE----TGKLKDLGINKLIALLSVLGI 60 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + R T + +G P G Sbjct: 61 ELTVKRRSEQKGLRKTAVSANVSYKGHLTEHLLANALATGQIPQG 105 >gi|308272863|emb|CBX29467.1| hypothetical protein N47_J04480 [uncultured Desulfobacterium sp.] Length = 225 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 16/163 (9%), Positives = 35/163 (21%), Gaps = 18/163 (11%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + ++ I + + L+ LA + ++ + +G S + +I A Sbjct: 35 NAQVARTIYELRKDAGLSQGELAELVETTQSVISRLEDADYDGH----SLSMLQRIAKAL 90 Query: 66 NETICQLLDLPFSDGRTTEKKEK--------EIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + T E G + Sbjct: 91 SCRLNVTFKKDDPKVTTLRYAFGELIKKLRLEGGWSIDQFVKKAGIDKEEALSIERDLSY 150 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 P Y I Q + + I+ Sbjct: 151 KPSPLTLYKIAEFYKIPQQKIAV------LAGAIKPNQNNIVE 187 >gi|260461784|ref|ZP_05810030.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|319785325|ref|YP_004144801.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032425|gb|EEW33690.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|317171213|gb|ADV14751.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 72 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K I + R+ +R LT LA +G + ++ R P+ +I+++ Sbjct: 1 MDMRKLIGRNVQRIRQRKRLTQEQLADISGFSQQYISGLEKG-----RRNPTIITIYELA 55 Query: 63 AATNETICQ 71 A + Sbjct: 56 LALGVSHMD 64 >gi|257095404|ref|YP_003169045.1| XRE family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047928|gb|ACV37116.1| transcriptional regulator, XRE family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 108 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 ++ E + + + LT LA AGL + + + + PS E + Sbjct: 4 RLGEKLRELRKERGLTLEKLADLAGLSKSYLWELENRESQ----RPSAEKL 50 >gi|299820781|ref|ZP_07052670.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|299817802|gb|EFI85037.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] Length = 111 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +K I I E + + LA+ + ++ + +R S + ++++ Sbjct: 1 MELNKYIGNKIRFFREENGYSQEKLAQLLRTSRQTVSRYENG-----DRKASQDVLYELA 55 Query: 63 AATNETICQLLDLPFSDGRT 82 +++ D Sbjct: 56 QLFGKSMDDFFPPREIDPPN 75 >gi|197301830|ref|ZP_03166900.1| hypothetical protein RUMLAC_00557 [Ruminococcus lactaris ATCC 29176] gi|197299270|gb|EDY33800.1| hypothetical protein RUMLAC_00557 [Ruminococcus lactaris ATCC 29176] Length = 54 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 3 SFSHKKIW--EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 +I E I + + ++ LA + + + +K +R + Sbjct: 7 KIKEAQIMLNENIKNLRKAKGISQEELAVRLNVVRQTVSKWERGVSQ 53 >gi|153816198|ref|ZP_01968866.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|317500518|ref|ZP_07958741.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089382|ref|ZP_08338281.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846533|gb|EDK23451.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|316898107|gb|EFV20155.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|330404750|gb|EGG84288.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] Length = 95 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R+ R+ L + LA+K + S + +R P + +I + Sbjct: 30 VGENIRRLRMRNQLKQADLAQKLNISRQSLSAYERGIT-----LPDIYLLIEIADFFRIS 84 Query: 69 ICQ 71 + + Sbjct: 85 LDE 87 >gi|91215022|ref|ZP_01251994.1| transcriptional regulator, putative [Psychroflexus torquis ATCC 700755] gi|91186627|gb|EAS72998.1| transcriptional regulator, putative [Psychroflexus torquis ATCC 700755] Length = 67 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + ++ + LA K + N+ +R R PS E ++K+ + I Sbjct: 1 MNRIKEGLKDKGISQTWLAEKMVKSYQTINEYERN-----KRQPSLEDLYKVAGILDFNI 55 Query: 70 CQ 71 + Sbjct: 56 SE 57 >gi|332364098|gb|EGJ41875.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 74 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSVRESIGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|317488433|ref|ZP_07946986.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325832081|ref|ZP_08165178.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316912477|gb|EFV34033.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325486402|gb|EGC88854.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 254 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 5/98 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + +L+ + LA G+ S K + +P + + K+ ++ Sbjct: 5 DNLQHLRGTRDLSQAQLATLLGVSRQSVAKWE-----AEKSYPEMDKLIKLCDLFECSLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 L+ + T + E +D + Sbjct: 60 DLVRGDLTGCATASEAIVEAEPASAAMPVDKDGYDEHM 97 >gi|300783935|ref|YP_003764226.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793449|gb|ADJ43824.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 74 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 6/76 (7%) Query: 3 SFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ ++ + H +T + LA + G+ + ++ PS E F+I Sbjct: 1 MVKPTRVTNSLRALRFAHGQMTQADLATRIGVTRQTVIAIEQGRY-----SPSLEMAFQI 55 Query: 62 LAATNETICQLLDLPF 77 + ++ P Sbjct: 56 AHVFGVPLEEVFQYPE 71 >gi|295106954|emb|CBL04497.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 73 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + +++ I + E L+ A G+ T + R S ++ I Sbjct: 7 TQRRLGLRIKDLREERGLSQYACAPLLGVSRTYLADVECG-----RRNVSLATLDSIARG 61 Query: 65 TNETICQ 71 ++ + Sbjct: 62 LGISLEE 68 >gi|295101270|emb|CBK98815.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 109 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I E+ T L+ G+ P + +R S E++ ++ Sbjct: 10 EIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGAS-----GISLEALQRLCRLLGV 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 + +++ + I + Sbjct: 65 SADRIIFGTEEPEAEALALARRISDI 90 >gi|271963369|ref|YP_003337565.1| signal peptidase I [Streptosporangium roseum DSM 43021] gi|270506544|gb|ACZ84822.1| signal peptidase I [Streptosporangium roseum DSM 43021] Length = 220 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 140 HKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM R+GD +++N + GD ++ + G K +I+ G ++ Sbjct: 57 FRIPSESMENTLREGDRVVVNKLHGETERGDVVVFEGWPGGDTIKRVIAVGGDTV 111 >gi|302555572|ref|ZP_07307914.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302473190|gb|EFL36283.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 212 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 6/134 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + + LAR+ G+ + ++ + + PS +++ I A + Sbjct: 9 VGARIRQARLERGTSLRALAREVGVSASLVSQIETGKSQ-----PSVSTLYAITTALGIS 63 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + L D S + + G + G + T+ + Sbjct: 64 VESLFDARASAPVAAASPPGTVLRALAALAADPGRRIGPLVGAGER-ETLELDSGVVWER 122 Query: 129 GIYAIQTQDTRHKT 142 Sbjct: 123 LGRVPGVDVDFLLV 136 >gi|239981315|ref|ZP_04703839.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] Length = 105 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 6/68 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + LT +A + G+ ++ +R + G+ E + + A + Sbjct: 37 GRKLAELRRARGLTQQEVADRMGVSKGRISQIERGHLSGQ------EVLARFATALGGRL 90 Query: 70 CQLLDLPF 77 Q + Sbjct: 91 HQAIYFDD 98 >gi|227545279|ref|ZP_03975328.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908649|ref|ZP_07126112.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227184748|gb|EEI64819.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894056|gb|EFK87414.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 69 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 8/74 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE---SIFKILAATN 66 + + + L+ LA+K G+ + N + PS E ++ K L Sbjct: 1 MNRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYN-----PSLELCINLAKALNTDL 55 Query: 67 ETICQLLDLPFSDG 80 ++ + Sbjct: 56 NSLFWEEHTDERNN 69 >gi|224541132|ref|ZP_03681671.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] gi|224525941|gb|EEF95046.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 5/72 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I LT +A G+ + + + +P S+ K+ + Sbjct: 4 DIGSKIKAARIGKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 58 Query: 68 TICQLLDLPFSD 79 ++ LL Sbjct: 59 SLDYLLKGEEKM 70 >gi|169349492|ref|ZP_02866430.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM 1552] gi|169293567|gb|EDS75700.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM 1552] Length = 77 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 I++ I + E +LT LA + S+++ +R R + E + KI Sbjct: 3 IYKRIRDLREDKDLTQKDLANYLNVSQKSYSRYERGE-----RTIAPEILSKIA 51 >gi|16271780|ref|NP_438117.1| repressor protein [Temperate phage phiNIH1.1] gi|21910799|ref|NP_665067.1| putative repressor - phage associated [Streptococcus pyogenes MGAS315] gi|28876377|ref|NP_795544.1| putative repressor [Streptococcus pyogenes phage 315.4] gi|28895512|ref|NP_801862.1| repressor protein [Streptococcus pyogenes SSI-1] gi|71903944|ref|YP_280747.1| Cro/CI family phage transcriptional regulator [Streptococcus pyogenes phage 6180.2] gi|94990867|ref|YP_598967.1| Cro/CI family phage transcriptional regulator [Streptococcus phage 10270.3] gi|16156172|gb|AAL15046.1| repressor protein [temperate phage PhiNIH1.1] gi|21905003|gb|AAM79870.1| putative repressor - phage-associated [Streptococcus pyogenes phage 315.4] gi|28810761|dbj|BAC63695.1| putative repressor protein [Streptococcus pyogenes SSI-1] gi|71803039|gb|AAX72392.1| phage transcriptional regulator, Cro/CI family [Streptococcus pyogenes phage 6180.2] gi|94544375|gb|ABF34423.1| phage transcriptional regulator, Cro/CI family [Streptococcus phage 10270.3] Length = 119 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F +++ I+ +A++ ++ +A GL K + +T+ I K Sbjct: 1 MTMF---EVYSRIEALAKKRGVSLQKVATDIGLSENYIYNLKS------KKTANTDPIEK 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I N + L +D + + FF G + + Sbjct: 52 IANYFNVST--DYLLGRTDNPKMAQDGHTSVAIDLKKDAEETFFFDGHELNDEDIDLI 107 >gi|219667836|ref|YP_002458271.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538096|gb|ACL19835.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 198 Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 16/39 (41%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 K+ I ++ + LT +A + + +K +R Sbjct: 5 KVGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLG 43 >gi|332665060|ref|YP_004447848.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333874|gb|AEE50975.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 174 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 17/39 (43%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + E + + + LT LA+++G ++ + + Sbjct: 113 VGEVLRQARKEAGLTQEELAKRSGTTKHYISRIENHHAD 151 >gi|297162496|gb|ADI12208.1| hypothetical protein SBI_09090 [Streptomyces bingchenggensis BCW-1] Length = 199 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 5/93 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + T S L+ G+ ++ ++ + R P+ E + + A Sbjct: 13 VGPRLRSLRQARGATLSQLSETTGISVSTLSRLESGQ-----RKPTLELLLPLAKAYQVP 67 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + +L+ P + + F P Sbjct: 68 LDELVGAPATGDPRVHPRPFTRHGRVFVPLTRH 100 >gi|291534560|emb|CBL07672.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 144 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ +I I + ++ T +A+K GL ++ + ++ I + P+ +SI K L Sbjct: 1 MTNVEIGYRIYMARKENHATLEEVAKKVGLAKSTIQRYEKGLINDV-KLPNIQSIAKALN 59 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 I + + K L Sbjct: 60 VNPNWIIGKSEEMHVQTQIYPKIIDYYNQLND 91 >gi|289649274|ref|ZP_06480617.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 109 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + L S +A +P + ++ +R P+ E + ++ + Sbjct: 5 VAARLKLLRTGKGLKQSEVAELIDCEPNTISRYERAET-----MPNIEDLLRLADLFGVS 59 Query: 69 ICQLLDLPFSDGRTTE 84 ++L S + Sbjct: 60 PMEILPPQDSTTQRIH 75 >gi|289549615|ref|YP_003470519.1| putativetranscriptional regulator [Staphylococcus lugdunensis HKU09-01] gi|289179147|gb|ADC86392.1| putativetranscriptional regulator [Staphylococcus lugdunensis HKU09-01] Length = 368 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + I + LT LA + + +K + + P + + K+ N Sbjct: 3 KINKVIKAQRTKLGLTQDKLAAYLDITKPTISKWENGSL-----MPDIQLLPKLAKLFNM 57 Query: 68 TICQLLDLPF 77 ++ +LLD Sbjct: 58 SVDELLDYQD 67 >gi|320012637|gb|ADW07487.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 206 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 15/146 (10%), Positives = 44/146 (30%), Gaps = 11/146 (7%) Query: 1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M+ + + + I + + LA +A + ++ ++ + R + Sbjct: 1 MSPVTQNDDELDSLVRKRIRALRVAQGWSLEELAGRAHIGQSTLSRIENG-----RRRLA 55 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + A + ++ QL++ D T+ + L+ + G G T Sbjct: 56 LDQLVTLARALDTSLDQLVETASDDVVTSPTIDAAHGLMRWAVKGDPGMSVVRQRMTEPP 115 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140 + + + Sbjct: 116 PDNPARMRAHPGREWLVVLSGTAVLM 141 >gi|229056760|ref|ZP_04196162.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] gi|228720554|gb|EEL72118.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] Length = 149 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|282600115|ref|ZP_05973067.2| conserved domain protein [Providencia rustigianii DSM 4541] gi|282566469|gb|EFB72004.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 96 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 11/71 (15%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S E + NLT S LA GL S + + I+ + R+ I + Sbjct: 28 MNTLS-----ERVKSRRVELNLTQSELADMVGLKQQSIQQIESGLIK-KPRF-----IIE 76 Query: 61 ILAATNETICQ 71 I +A Sbjct: 77 IASALKCEPSW 87 >gi|239627346|ref|ZP_04670377.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517492|gb|EEQ57358.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 48/158 (30%), Gaps = 8/158 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ E + L+ L++ +G+ + + +R P+ +++K+ Sbjct: 8 VAKNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGN-----PTISTLWKLSNGMKVP 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L P S + E + L + F + + + E + Sbjct: 63 FDALTVRPKSPYEIVDTAELQPLLEDGGKVKNYSIFPDDENRRFAVY-YLELDEGSFWES 121 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166 + T + + + G + + Sbjct: 122 EPHLKGTTEFITISAGRIEISA--DGHRFTVGKGESIR 157 >gi|221210350|ref|ZP_03583330.1| putative transposase [Burkholderia multivorans CGD1] gi|221169306|gb|EEE01773.1| putative transposase [Burkholderia multivorans CGD1] Length = 341 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%) Query: 2 TSFSHKKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + ++ E I +A + H + +AR+ G+ + + R + P K Sbjct: 4 KMLTQEQSLE-IRVLARQGHGI--KAIARELGVSRNTVRRYLRGEATPPSYGPRAARPRK 60 Query: 61 ILAATNETICQLLDLPFSDGRTT 83 + T ++ T Sbjct: 61 LDPYTQYLRDRIEAAHPHWIPAT 83 >gi|209519410|ref|ZP_03268207.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209500149|gb|EEA00208.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 212 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ +T L+R AG+ + ++ +R P+ +++ A Sbjct: 34 RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L P +IP L + + G + + Sbjct: 89 SLDSLFAQPKPPEVIAVSGPHDIPTLSGHDAKYQLRVWGPIELAGK-FEWYEL 140 >gi|149921925|ref|ZP_01910368.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817187|gb|EDM76665.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 111 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 5/80 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R+ + L+ LA + GL + + + PS ++ + + + Sbjct: 16 LRRLRKTRGLSQEALATRGGLSNDTIRRLEHGTF-----SPSLNTLVGLATGLGLRLSTI 70 Query: 73 LDLPFSDGRTTEKKEKEIPL 92 L E++ ++ + Sbjct: 71 LASYEIGMLPVERELADLLV 90 >gi|89212744|gb|ABD63852.1| putative repressor [Lactococcus phage phismq86] gi|326407702|gb|ADZ64773.1| phage repressor [Lactococcus lactis subsp. lactis CV56] Length = 136 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ LT LA K G ++ ++ + P E I + N + Sbjct: 12 VKTLRQQAGLTMKQLAEKMGKTESAISRWESGDN-----SPKLEDINALADFFNVDMN 64 >gi|229544193|ref|ZP_04433252.1| signal peptidase I [Bacillus coagulans 36D1] gi|229325332|gb|EEN91008.1| signal peptidase I [Bacillus coagulans 36D1] Length = 175 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Query: 142 TQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 + SM P D ++ ++SA GD ++ + K +I G +I + Sbjct: 32 VEGESMEPTLHNHDKILVYKVHSAADYQRGDIII-IKGETENYVKRIIGLPGDTILVK 88 >gi|114765327|ref|ZP_01444444.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114542307|gb|EAU45336.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 206 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + + T AR+AGL ++ +K + + P+ +++ K+ Sbjct: 25 DLGARVRELRKARDWTLEQAAREAGLARSTLSKIENGQM-----SPTYDALKKLAVGLGI 79 Query: 68 TICQLLDLP 76 + QL P Sbjct: 80 GVPQLFTPP 88 >gi|24380321|ref|NP_722276.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24378337|gb|AAN59582.1|AE015021_3 putative transcriptional regulator [Streptococcus mutans UA159] Length = 81 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 5/77 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + + L+ S LA + + ++ S E +KI TI Sbjct: 4 RIQELRKINKLSQSELADALSVTRQTIISLEKGRYNA-----SLELAYKIAKYFGTTIED 58 Query: 72 LLDLPFSDGRTTEKKEK 88 + + K Sbjct: 59 VFIFEDENRGDGNNVSK 75 >gi|8920259|emb|CAB96432.1| hypothetical protein [Mycobacterium avium subsp. paratuberculosis] Length = 146 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E + + + LA G+ + +R R P ++ KI Sbjct: 1 MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGA-----RKPHKSTVQKIEN 55 Query: 64 ATN 66 Sbjct: 56 GLG 58 >gi|332702150|ref|ZP_08422238.1| Cupin 2 conserved barrel domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552299|gb|EGJ49343.1| Cupin 2 conserved barrel domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 188 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 5/116 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +K+ I ER NL+ LA+++GL N + + +PS + K+ Sbjct: 1 MKSEKLGARIRTYRERKNLSRDELAQRSGLSLDIINALEEQDL-----YPSLGPLLKVTR 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 A + +D S +K++ L G G + Sbjct: 56 ALGLRLGTFMDDAGSTDPLVVRKDQRKQGLAMHTPRHGEALRFYSLGKGKADRHME 111 >gi|332286204|ref|YP_004418115.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] gi|330430157|gb|AEC21491.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] Length = 194 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 41/178 (23%), Gaps = 20/178 (11%) Query: 20 HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD 79 LT LA K+G +K + P S+ +I A + P Sbjct: 3 RGLTLDALAEKSGFTKGYLSKLENGKST-----PPIASLARIARALGHDLNYFFVDP--- 54 Query: 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139 ++ E +G ++ V + Sbjct: 55 -GEPQQGSDESLHALVSVVHHWERKPITRGGSGFGYDYVSL--AHKKARKHMEPFIFTFP 111 Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197 + + + + + S + + V K G S+ S Sbjct: 112 SEVDIDTYFEH-PGEEFVYIMSGE--------VEFQIKINGVLKRWTLEPGDSLYFES 160 >gi|325264752|ref|ZP_08131481.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030044|gb|EGB91330.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 130 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 5/108 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R + ++T LA+ + +++ + R P + + KI N Sbjct: 5 QLVANLARYRKARHMTQKELAKMLNISRQAYSNYETG-----KRTPDIDLLLKISQIYNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 T+ QL++ PFS T +++ S + + + Sbjct: 60 TLDQLINQPFSPDGTIREQKGPYQSGVELLSADTIYLTAEEVSILKGY 107 >gi|323142483|ref|ZP_08077303.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413060|gb|EFY03959.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 141 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/107 (11%), Positives = 24/107 (22%), Gaps = 5/107 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I R LT +A GL + + + +I + + + Sbjct: 10 IGLRIKAARARKGLTQGNIANLTGLSTPHISNIETGNTK-----LGLPTIIHLANVLDVS 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + +LL E + + Sbjct: 65 VDELLCDNIHHSEQIYCNELADLVKDCSVDELHIISELAKVIKKAGI 111 >gi|313633472|gb|EFS00296.1| signal peptidase I [Listeria seeligeri FSL N1-067] gi|313638162|gb|EFS03418.1| signal peptidase I [Listeria seeligeri FSL S4-171] Length = 180 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM+P D +I+N V+ D ++ + G K +I G +++ + Sbjct: 34 ILVDGISMMPTLHNDDRVIINRFGHVDRFDVIVFRENDGKEYIKRVIGLPGDTVEYKAD 92 >gi|313898654|ref|ZP_07832189.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956538|gb|EFR38171.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 118 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 7/83 (8%) Query: 1 MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + ++ +AI + +R +T LA G S + + P + + Sbjct: 1 MKKVTEINLRVGDAIRKGLQRKGMTQKELAALVGSTQRSISSYINGNAQ-----PPLDIL 55 Query: 59 FKILAATNETICQLLDLPFSDGR 81 I + Q+L +P + Sbjct: 56 SLICRILEINMNQILQIPDFNFP 78 >gi|307273981|ref|ZP_07555191.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0855] gi|306509289|gb|EFM78349.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0855] Length = 71 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 6/47 (12%), Positives = 15/47 (31%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + R + + + LA+K + + + + T S Sbjct: 5 SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKTLS 51 >gi|294146600|ref|YP_003559266.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677017|dbj|BAI98534.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 236 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 6/51 (11%), Positives = 17/51 (33%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 + + E + R+ ++ + L+ + G + + R S Sbjct: 124 EGLGERLLRLRHEKGMSRTALSERTGFSKPTIWGWETGRTTPRRENLRILS 174 >gi|291444821|ref|ZP_06584211.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291347768|gb|EFE74672.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length = 213 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +A+ ++ + LAR+AG+ +K + G P + + + Sbjct: 101 DLGQAVYDRRTALGISQTELARRAGMTQPQVSKLELGGTV--PTVPLLARLARAME 154 >gi|289434555|ref|YP_003464427.1| Signal peptidase I [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170799|emb|CBH27341.1| sipZ [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 180 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM+P D +I+N V+ D ++ + G K +I G +++ + Sbjct: 34 ILVDGISMMPTLHNDDRVIINRFGHVDRFDVIVFRENDGKEYIKRVIGLPGDTVEYKAD 92 >gi|283768986|ref|ZP_06341892.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104343|gb|EFC05720.1| DNA-binding protein [Bulleidia extructa W1219] Length = 180 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 43/140 (30%), Gaps = 12/140 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I ++ +++LT LA + L ++ +R PS +S+ + A Sbjct: 3 NIGARIKQLRLKNDLTLEELASRTELTKGFLSQLERNRT-----SPSIQSLADVAEALGV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKE------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + + ++++ + + + P+ + + + + + Sbjct: 58 NLSGFFQEDVEEQIVFQEEDAFVDEQEGMKIFWIVPNAQKNVMEPIRLVIESGYQSKVLE 117 Query: 122 EIRSPHNGIYAIQTQDTRHK 141 Y + + Sbjct: 118 P-HEGEELGYVLNGRIHVVT 136 >gi|270291165|ref|ZP_06197388.1| predicted protein [Pediococcus acidilactici 7_4] gi|270280561|gb|EFA26396.1| predicted protein [Pediococcus acidilactici 7_4] Length = 114 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ I + I ++ + LT LA K+ L ++ +R + S ++I I Sbjct: 1 MSANINIGKLIKQVRKESGLTQEELAEKSDLSVNFISRIERTDNQ----NISWKNIEAIA 56 Query: 63 AATNETICQLLDLPFSDGRT 82 A + +LL + + + Sbjct: 57 EALGLSTIELLQVNENRQQH 76 >gi|240850354|ref|YP_002971747.1| hypothetical protein Bgr_07660 [Bartonella grahamii as4aup] gi|240267477|gb|ACS51065.1| hypothetical protein Bgr_07660 [Bartonella grahamii as4aup] Length = 110 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 1/97 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M+S K I + +++ LA G+ ++ ++ G++R S + Sbjct: 1 MSSNIEKSIRQWLEKKLNERGHGAQIELAAHLGIHQSTISRMINPYKNGKSRSISIGELV 60 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 KI NE + + + E Sbjct: 61 KIAEFFNEPPPNFFNDVDQEFMNFYRDLSEENKRDVI 97 >gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 198 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H I I + + LT L+R+ L + ++ +R S S+FK+ A Sbjct: 133 HASIGRNIRELRKTRGLTLKQLSRRTNLSVSLLSQIERAESSA-----SVSSLFKVATAL 187 Query: 66 NETICQ 71 + I + Sbjct: 188 DVPITE 193 >gi|210613654|ref|ZP_03289813.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] gi|210151084|gb|EEA82092.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] Length = 118 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ I E+ ++ LA G+ + + E + E +F+I Sbjct: 13 QEVGRKIRHYREKKKMSQLELAEAIGVTQNTIYLIETAQSEMK-----LEKLFRIAEVL 66 >gi|126735060|ref|ZP_01750806.1| DNA binding protein, putative [Roseobacter sp. CCS2] gi|126715615|gb|EBA12480.1| DNA binding protein, putative [Roseobacter sp. CCS2] Length = 282 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 3/103 (2%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ +T S LAR+A +D ++ ++ + + R P+ + + A + Sbjct: 12 ARLQAGMKQAGITQSALARQAQVDRSTLSQLIK---DDGARLPNGQLVAACAAVLGVSAD 68 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 LL L + + I + + + Sbjct: 69 WLLGLSDLPEQAQDLVANAISMTQAQRALVDEKIFAWHQEAEG 111 >gi|254235322|ref|ZP_04928645.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719] gi|126167253|gb|EAZ52764.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719] Length = 193 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 5/108 (4%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +++ + R+ + NL+ LAR +G+ + + PS + + KI Sbjct: 7 DLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSV-----PSIKVLCKIA 61 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 ++ LD G ++ L+ + + Sbjct: 62 QGLKVSVAAFLDDRAFAGVAVLPAQQSKRLVSADGAFTSRALFPFDVA 109 >gi|118463481|ref|YP_879341.1| helix-turn-helix domain-containing protein [Mycobacterium avium 104] gi|118164768|gb|ABK65665.1| helix-turn-helix domain protein [Mycobacterium avium 104] Length = 262 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E + + + LA G+ + +R R P ++ KI Sbjct: 1 MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGA-----RKPHKSTVQKIEN 55 Query: 64 ATN 66 Sbjct: 56 GLG 58 >gi|29377418|ref|NP_816572.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344885|gb|AAO82642.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 316 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 5/86 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + N+T L+ + G+ ++ N+ + E P E+ K+ + Sbjct: 1 MNRLKELRKEKNITLVELSEELGIPRSTLNRYENEDSE-----PKQETWEKLADYYGVST 55 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYF 95 L+ + + + Sbjct: 56 AYLMGISNQKVSEEKALTAAKKVYQV 81 >gi|163938942|ref|YP_001643826.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861139|gb|ABY42198.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 149 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|86140990|ref|ZP_01059549.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] gi|85832932|gb|EAQ51381.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] Length = 66 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + +T S LA++ + + N ++ + PS + F++ A N +I Sbjct: 3 NNIKELRAALKMTQSDLAQQIEVSRQTVNAIEKGKFD-----PSLPTAFRLAAVFNCSIE 57 Query: 71 QLLDLPF 77 +L Sbjct: 58 ELFVYES 64 >gi|325478503|gb|EGC81616.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 129 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E L+ LA+ + + ++ + + R R + + + K L T+ Sbjct: 7 LKELREIKKLSQEDLAKLCQVSTKTISRYELGQSKPRYRK-TYDLLAKHLDTTH 59 >gi|325298403|ref|YP_004258320.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317956|gb|ADY35847.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 120 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 16/38 (42%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 E + + +T LA + G D + ++ ++ + Sbjct: 59 GEVLRDRRKALGITQKELAERIGRDRSYISRLEKGETD 96 >gi|317472617|ref|ZP_07931934.1| hypothetical protein HMPREF1011_02284 [Anaerostipes sp. 3_2_56FAA] gi|316899903|gb|EFV21900.1| hypothetical protein HMPREF1011_02284 [Anaerostipes sp. 3_2_56FAA] Length = 369 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 8/107 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + +T LA G+ S +K + +P + + Sbjct: 1 MKEL---NLSNILVKKRKEKGITQDQLAAYIGVSKASVSKWETGQS-----YPDITFLPQ 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + A N ++ +L+ + +K F + F+ Sbjct: 53 LAAYFNMSVDELIGYKPQMTKEDIRKLYLRLAKDFSQKPAKEVFEEC 99 >gi|307592445|ref|YP_003900036.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306986090|gb|ADN17970.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 67 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 ++ E+ LT +A + G+ + + + + R ST+ + K+ ++ Sbjct: 11 KLREKAGLTQRQVANELGVTDQTVSNWETGQR--KPRLSSTQWL-KLCQLFQCSLED 64 >gi|302386036|ref|YP_003821858.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196664|gb|ADL04235.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 204 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ +++NLT LA + + T+ +K + +P+ ES+ I +I Sbjct: 5 EKLQQLRKQNNLTQEQLAEQLYVSRTAVSKWESGKG-----YPNIESLKCISKVFAVSID 59 Query: 71 Q 71 + Sbjct: 60 E 60 >gi|256782955|ref|ZP_05521386.1| transcriptional regulatory protein [Streptomyces lividans TK24] gi|289766838|ref|ZP_06526216.1| transcriptional regulatory protein [Streptomyces lividans TK24] gi|289697037|gb|EFD64466.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 739 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 R+ E LT + +A+ G+ S + E R E+ ++L + Sbjct: 33 RLREAAGLTQAAVAQALGVRVASIQAWETGRAE--PRAERIEAYRRLLEGLSRRFPASAV 90 Query: 75 LPFSDGRTTEKKE 87 P S Sbjct: 91 PPGSSEAAPRPDP 103 >gi|261822660|ref|YP_003260766.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261606673|gb|ACX89159.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 154 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + ++ A + G + ++ +R G S ++I Sbjct: 1 MKKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55 Query: 61 ILAATNETICQ 71 + A + Q Sbjct: 56 LANALSVEPWQ 66 >gi|228909080|ref|ZP_04072909.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228850588|gb|EEM95413.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] Length = 108 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T LA L ++ +R R P ++ +I + + Sbjct: 5 GNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFDVS 58 >gi|227512467|ref|ZP_03942516.1| hypothetical protein HMPREF0497_1589 [Lactobacillus buchneri ATCC 11577] gi|227522692|ref|ZP_03952741.1| hypothetical protein HMPREF0519_0401 [Lactobacillus hilgardii ATCC 8290] gi|227084292|gb|EEI19604.1| hypothetical protein HMPREF0497_1589 [Lactobacillus buchneri ATCC 11577] gi|227090140|gb|EEI25452.1| hypothetical protein HMPREF0519_0401 [Lactobacillus hilgardii ATCC 8290] Length = 67 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ L+ + LA K+G+ ++ + +R P+ ++ K+ A N T +L Sbjct: 6 LRFFRDKQKLSQTDLAVKSGVKQSTISSIERGV------DPTGRTLRKLAQALNVTTDEL 59 Query: 73 LDLPF 77 L++ Sbjct: 60 LNMKE 64 >gi|213031130|emb|CAR31467.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 17/39 (43%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I + I + + H+LT AR G+ S ++ + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSS 40 >gi|218781485|ref|YP_002432803.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762869|gb|ACL05335.1| transcriptional regulator of molybdate metabolism, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 372 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 6/66 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + I + + + ++ + LA G+ + + P+T K Sbjct: 1 MSK-QNDSISCKVKQYRQEAGVSQAQLADLVGVKRQAIYDIESGKY-----LPNTGVALK 54 Query: 61 ILAATN 66 + Sbjct: 55 LARHLG 60 >gi|159043770|ref|YP_001532564.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911530|gb|ABV92963.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 468 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 5/89 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + T + +A+ G+ P N + R S + + + N Sbjct: 6 VGPRLRALRRERKQTQAEMAQALGVSPAYVNLLENNQ-----RSLSVQMLMALTETYNVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 L+ + T + + P+ Sbjct: 61 WRDLVKDDAATQLTDLRHAMQDPVFTDAA 89 >gi|153931215|ref|YP_001382744.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935772|ref|YP_001386295.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168177684|ref|ZP_02612348.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|170758347|ref|YP_001785679.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|226947573|ref|YP_002802664.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|152927259|gb|ABS32759.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931686|gb|ABS37185.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169405336|gb|ACA53747.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|182671289|gb|EDT83263.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226844325|gb|ACO86991.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 181 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 7/138 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E I + + NLT L+ K GL + ++ + + S+ KI A N Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSS-----SLAITSLKKIADALN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I P +K+E+E + S S SG F + + V Sbjct: 58 VPITYFFKSPELHKFLVKKQERE--VFELEGSSSKFIRLSGNFTERAMESILVVIPAEKQ 115 Query: 127 HNGIYAIQTQDTRHKTQD 144 H ++ ++ + + Sbjct: 116 HGHKFSHPGEEFIYVLEG 133 >gi|73540702|ref|YP_295222.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia eutropha JMP134] gi|72118115|gb|AAZ60378.1| Helix-turn-helix motif [Ralstonia eutropha JMP134] Length = 129 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 5/134 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + ++ + R+ +R + L+ ++GL + + +R R + +I Sbjct: 1 MTKHTLREFGLHLARLRKRRGWSQETLSLESGLARSYLSGIERG-----KRNLALLNICM 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + ++LD +E + + + + V Sbjct: 56 LADTLGVPPSEMLDFEIQGSSALHVEEPRSVFGNAQNAAIEATLRHMAELSEAEVDLVAA 115 Query: 121 PEIRSPHNGIYAIQ 134 G Y + Sbjct: 116 MVRALARKGSYRLD 129 >gi|39997131|ref|NP_953082.1| transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984021|gb|AAR35409.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA] Length = 124 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ E ++ + LAR AG+ P + + +R E+ KIL A ++ Sbjct: 63 NNVKKIREERLMSKAELARLAGVSPATIERIERGE------ECRMETKRKILLALGFSLS 116 Query: 71 Q 71 + Sbjct: 117 E 117 >gi|148548763|ref|YP_001268865.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512821|gb|ABQ79681.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 184 Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 44/173 (25%), Gaps = 14/173 (8%) Query: 3 SFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 H++I I + + LT LA++ G ++ +R P+ + Sbjct: 1 MKVHEEIEGLAVLIRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSR-----PTVADLT 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 I + L + E L+ + + + ++ Sbjct: 56 AISEELGVSTAYFYKLDKPRELDWVTRPHERRTLHLAGGITDVLASPSITGAFSMLDSHL 115 Query: 120 VPEIRSPHNGI-YAIQTQDTRHKTQ-----DTSMLPLYRKGDILILNSAIQVN 166 P S + + + + + + D L + Sbjct: 116 QPGASSGEEYLDDSSEQGCFVLEGELTVWLGDAEPVTLHANDSFQLQPHARFR 168 >gi|317126051|ref|YP_004100163.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] gi|315590139|gb|ADU49436.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] Length = 138 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 7/68 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M+ + + E L+ LA AG+ ++ +R + PS E + + Sbjct: 1 MSRL--PDLGAYLREQRENAQLSLRQLAEIAGISNPYLSQIERG-----LKKPSAEILQQ 53 Query: 61 ILAATNET 68 I + Sbjct: 54 IAKGLEVS 61 >gi|302379982|ref|ZP_07268461.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302312208|gb|EFK94210.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] Length = 67 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + L+ LA+ G+ S + I P+ E+ +KI N+ Sbjct: 5 IENRIAEFRKELGLSQHRLAKAVGMKRRSIMAYENNTI-----SPTLETAYKICKVLNKD 59 Query: 69 ICQLLDLP 76 I ++ Sbjct: 60 IKEVFIFK 67 >gi|255292005|dbj|BAH90488.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292866|dbj|BAH89966.1| transcriptional regulator [uncultured bacterium] gi|255292956|dbj|BAH90054.1| XRE family transcriptional regulator [uncultured bacterium] gi|255293226|dbj|BAH90316.1| XRE family transcriptional regulator [uncultured bacterium] Length = 96 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + ++ LA AG++ + K +R P+ IFKI A + + Sbjct: 26 GAAVRALRIERGISQESLAHLAGIERSHMGKVERGE-----HMPTLAVIFKIARALDCST 80 Query: 70 CQLLDLPFSDGRTTEK 85 L+ + +E Sbjct: 81 AVLMAETENQIAASET 96 >gi|228994652|ref|ZP_04154474.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM 12442] gi|228765084|gb|EEM13816.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM 12442] Length = 188 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 18/36 (50%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43 ++ + ++ + HN + + LA K + + +K + Sbjct: 19 ELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWEN 54 >gi|229000364|ref|ZP_04159924.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17] gi|228759391|gb|EEM08377.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17] Length = 188 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 18/36 (50%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43 ++ + ++ + HN + + LA K + + +K + Sbjct: 19 ELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWEN 54 >gi|16519701|ref|NP_443821.1| transcription regulator; symbiotic plasmid stability locus [Sinorhizobium fredii NGR234] gi|2496605|sp|P55411|Y4DL_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4dL gi|7465606|pir||T02775 y4dL protein - Rhizobium sp. plasmid pNGR234a gi|2182355|gb|AAB91641.1| transcription regulator; symbiotic plasmid stability locus [Sinorhizobium fredii NGR234] Length = 196 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 5/108 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + E ++ L+ ++GL + ++ +R +E P S+ + A + Sbjct: 6 EHITQQLRAAREAQKMSQRELSARSGLTQSHISQIERGTME-----PGLGSLVDVARALD 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 I R + F Sbjct: 61 LEIVLAPKKLMPAIRNILDSASASSDVLTSDQRKLVGRLERWFAQHRG 108 >gi|163941533|ref|YP_001646417.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863730|gb|ABY44789.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 123 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ + +NLT L +K L ++ + + R P +++ K + Sbjct: 2 IGENLRKLRKTNNLTMKDLGKKLNLAESTISGYENGN-----RKPDYDTLNKFADFFEVS 56 >gi|223933356|ref|ZP_03625344.1| protein of unknown function DUF955 [Streptococcus suis 89/1591] gi|330833524|ref|YP_004402349.1| hypothetical protein SSUST3_1750 [Streptococcus suis ST3] gi|223898006|gb|EEF64379.1| protein of unknown function DUF955 [Streptococcus suis 89/1591] gi|329307747|gb|AEB82163.1| protein of unknown function DUF955 [Streptococcus suis ST3] Length = 385 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 9/127 (7%) Query: 14 DRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 DR+ E + + S LA G+ +K ++ + PS+E + KI+ + Sbjct: 8 DRLRESRYFRHYSISQLAENVGVSKQMISKYEKNLSK-----PSSEVLQKIIFELKFPLS 62 Query: 71 QLLDLPFSDGRTTEKKEKEI-PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 + S + + V P++ + Sbjct: 63 FYQTKDKFITTDLGTFYRSKLTSSQTEKKSSEMLKKALALLANFFEDYVDFPKLAEFESH 122 Query: 130 IYAIQTQ 136 A + Sbjct: 123 ENASPEE 129 >gi|116628909|ref|YP_814081.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|311111276|ref|ZP_07712673.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] gi|116094491|gb|ABJ59643.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|311066430|gb|EFQ46770.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] Length = 334 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + I + +++NL+ GLA K + + +K + P E I + Sbjct: 2 RLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSI-----PDIEKIVNLSELFG 55 >gi|315182632|gb|ADT89545.1| transcriptional regulator, HTH_3 family [Vibrio furnissii NCTC 11218] Length = 207 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 13/177 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + + +T +++ GL ++ +K + I P+ +++ K+ Sbjct: 27 KLGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLQI 81 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + QL + P + + + N +P Sbjct: 82 DMPQLFEPPKKIMASGRRDVTKKGQ----GKPHPTQTYEHELLATQLSNKKMMPFKSRVR 137 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVA 182 + + L + + V GD + G ++ Sbjct: 138 ARAFEEYGD--WVRHDGEEFLLILEGEVMFYSEFYEPVLLAEGDSVYYDANMGHMLV 192 >gi|312865715|ref|ZP_07725939.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098836|gb|EFQ57056.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 116 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + LT +A K + + +++ G R PS+E++ K + + Sbjct: 4 ERLKSLRLEAGLTQKEIATKLNMTQPQYARTENGG-----RKPSSETLNKFAEFFDVS 56 >gi|293402557|ref|ZP_06646692.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304071|gb|EFE45325.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 173 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 E I + + L+ LA K + + +K + Sbjct: 4 ENIKAIRKAKGLSQEELAIKLNVVRQTISKWENGLSVP 41 >gi|271969826|ref|YP_003344022.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270513001|gb|ACZ91279.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 118 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + E + + S AR+AG+ P ++ +R E PS+E I + A Sbjct: 31 LGERLRGLRHERGEKLSETARRAGVSPQYLSEMERGVKE-----PSSEMIAAVAGAL 82 >gi|260770117|ref|ZP_05879050.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972] gi|260615455|gb|EEX40641.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972] Length = 207 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 13/177 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + + +T +++ GL ++ +K + I P+ +++ K+ Sbjct: 27 KLGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLQI 81 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + QL + P + + + N +P Sbjct: 82 DMPQLFEPPKKIMASGRRDVTKKGQ----GKPHPTQTYEHELLATQLSNKKMMPFKSRVR 137 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVA 182 + + L + + V GD + G ++ Sbjct: 138 ARAFEEYGD--WVRHDGEEFLLILEGEVMFYSEFYEPVLLAEGDSVYYDANMGHMLV 192 >gi|297570524|ref|YP_003691868.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] gi|296926439|gb|ADH87249.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] Length = 105 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + LT L K GL + ++ + ++ R S + + L Sbjct: 3 DDIVRKLRAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDM--RLSSFLEMARFLD 57 >gi|228969787|ref|ZP_04130551.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228789939|gb|EEM37757.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 184 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 19/52 (36%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + + I + LT LA A + P+ ++ ++ + S+ Sbjct: 5 NVGQKIKAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVA 56 >gi|227819136|ref|YP_002823107.1| HTH-type transcriptional regulator y4dL [Sinorhizobium fredii NGR234] gi|227338135|gb|ACP22354.1| putative HTH-type transcriptional regulator y4dL [Sinorhizobium fredii NGR234] Length = 196 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + + E ++ L+ ++GL + ++ +R +E P S+ + A Sbjct: 6 EHITQQLRAAREARKMSQRELSARSGLTQSHISQIERGTME-----PGLGSLVDVARAL 59 >gi|226323100|ref|ZP_03798618.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] gi|225208290|gb|EEG90644.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] Length = 316 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 16/38 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 KI + I + LT LA K + S +K +R Sbjct: 5 KIGKYIAEKRKALGLTQKQLAEKLNMSDKSVSKWERGI 42 >gi|219667464|ref|YP_002457899.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537724|gb|ACL19463.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 113 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 5/75 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E + + ER +T LA G+ + + ++ ++ I Sbjct: 7 RVAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTN-----SIDISTLLNICNFLEI 61 Query: 68 TICQLLDLPFSDGRT 82 + + + Sbjct: 62 NLDDIYGISDKKISP 76 >gi|193083797|gb|ACF09480.1| inosine-5'-monophosphate dehydrogenase [uncultured marine crenarchaeote KM3-47-D6] Length = 178 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 40/163 (24%), Gaps = 9/163 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESIFKILAATNE 67 E I ++ N+T LA G+ + N+ + + ES+ K+ T+ Sbjct: 5 LETIKEERKKLNMTQKKLAAMTGVSTSMINQIESGRCQPSYSTAKKIFESLAKLEGQTST 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-----FPTGNKWNTVGVPE 122 + T +E + + Sbjct: 65 RKAGDICSEKIVRLTPSNTIREAGKKMHEKTIDQIPIFDEDGLKGLITIDIVNEYTERKD 124 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 I+ + D S L +++ ++ Sbjct: 125 IKIKNVMNPKPPIIDFEFPANALSQLTRISGC--VLVEKNSKI 165 >gi|172057905|ref|YP_001814365.1| signal peptidase I [Exiguobacterium sibiricum 255-15] gi|171990426|gb|ACB61348.1| signal peptidase I [Exiguobacterium sibiricum 255-15] Length = 179 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 5/70 (7%) Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAKV 184 + I+T SM+P D +I+N + GD ++ K Sbjct: 18 AFIIRTFLFVPVIVDGESMMPTLHNSDRMIVNKVPYYFNEPERGDIVVFHATETRDYIKR 77 Query: 185 LISRRGRSID 194 +I+ G ++ Sbjct: 78 VIAVPGDTMY 87 >gi|169351117|ref|ZP_02868055.1| hypothetical protein CLOSPI_01896 [Clostridium spiroforme DSM 1552] gi|169292179|gb|EDS74312.1| hypothetical protein CLOSPI_01896 [Clostridium spiroforme DSM 1552] Length = 171 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 141 KTQDTSMLPLYRKGDILILN----SAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRS 192 K TSMLP Y +G+I++++ + D +++ + K ++ G Sbjct: 37 KVYGTSMLPTYHEGNIVLVDKVFYKHNEPKRNDIVVVDYKDANMKETFIIKRVVGIGGDH 96 Query: 193 IDLMSLNCCY 202 I++ N Y Sbjct: 97 IEIK-DNELY 105 >gi|94968151|ref|YP_590199.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550201|gb|ABF40125.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 338 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 2/68 (2%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 FS + I + L+ LA++ GL + P + I Sbjct: 217 FSQNIVGSRIRELRLEAGLSLGDLAKRVGLTEQGLQNIEENV--DTISNPGLTVLRWIAT 274 Query: 64 ATNETICQ 71 A T+ + Sbjct: 275 ALKTTVAE 282 >gi|206563935|ref|YP_002234698.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198039975|emb|CAR55953.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 185 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 38/151 (25%), Gaps = 14/151 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + +T + LA + G ++ +R P+ + I A Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 68 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--------TGNKWNTVGVPEIR 124 L + E +Y+ + + G ++ P Sbjct: 69 YSLSKPRSVPWVTRPDERRTVYYAAGITDILVSPNMRSRFSILESHLGPGASSGERPVDD 128 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 S G + ++ + D Sbjct: 129 SDEQGGFVLEGEL-TIWIDGDDTPVTLGPND 158 >gi|84616894|emb|CAJ13788.1| hypothetical protein dmi50 [Desulfococcus multivorans] Length = 69 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 18/42 (42%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + E + + ++ L+ LA + G+ ++ N+ + Sbjct: 6 ENFAETVKEVRQQLGLSQEELAHELGVSFSTINRWENRKTVP 47 >gi|47567915|ref|ZP_00238622.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47555393|gb|EAL13737.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 262 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 30/135 (22%), Gaps = 6/135 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + L+ LA K + +K + +P TE + I ++ Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L ++ + G S G + Sbjct: 59 -DYLLKETAEKSNENVDGYYVSQEMAEGYIVYGQKISKYIALGFSLLILSTIPYLLFKED 117 Query: 130 IYAIQTQDTRHKTQD 144 Sbjct: 118 ATMSTFLVIIIAVLG 132 >gi|294102727|ref|YP_003554585.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293617707|gb|ADE57861.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 114 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +++ I + + + + LT +A +D + +K ++ R S + + K Sbjct: 1 MLNYELIGQRFNELRSKSGLTQGQMAAYLDVDQSYISKCEKNE-----RQFSIDILEKAA 55 Query: 63 AATNET 68 + Sbjct: 56 SLFGCP 61 >gi|268610104|ref|ZP_06143831.1| hypothetical protein RflaF_11484 [Ruminococcus flavefaciens FD-1] Length = 119 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + +++ + LA +A + +K + + + +I A + Sbjct: 11 IGERIKQARKELDISQTELAERADISVPYLSKIEMGKSD-----FGVSVLIRISEALQIS 65 >gi|229173997|ref|ZP_04301534.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] gi|228609506|gb|EEK66791.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] Length = 374 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + ++ F Sbjct: 56 YFNISIDKLICYTPQMEQEAIRELYHRLAEAFSEEPFDEVMIEC 99 >gi|257784647|ref|YP_003179864.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473154|gb|ACV51273.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 142 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 5/66 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + H+ + LA G+ + +K + P E + TI Sbjct: 5 ENLVELRKYHDFSQEELADMIGVSRQTLSKYETGES-----LPDIEKCKRFANVFGVTID 59 Query: 71 QLLDLP 76 L+ Sbjct: 60 DLISYD 65 >gi|300362438|ref|ZP_07058614.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] gi|300353429|gb|EFJ69301.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] Length = 95 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I + +++NL+ GLA K + + +K + P E I + Sbjct: 2 RLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSI-----PDIEKIVNLSELFGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 T LL + + L Sbjct: 57 TTDYLLKSGEPSFELKNEDINDKDKLPI 84 >gi|212223696|ref|YP_002306932.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212008653|gb|ACJ16035.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 190 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 5/101 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R+ + +T LA KAG+ K + ++ P + +IL A E Sbjct: 13 IRRIRKELGITQEELAEKAGVTQAYIAKLEAGKVD-----PRLSTFNRILQALLECKKAQ 67 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 L + + + GN Sbjct: 68 LRAKDVMSSPVISVKPYESVENVIRIMNDHNISQIPVIAGN 108 >gi|126697922|ref|YP_001086819.1| putative transcriptional regulator [Clostridium difficile 630] gi|254974024|ref|ZP_05270496.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091410|ref|ZP_05320888.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255099524|ref|ZP_05328501.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305380|ref|ZP_05349552.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313070|ref|ZP_05354653.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255515827|ref|ZP_05383503.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255648919|ref|ZP_05395821.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682132|ref|YP_003213417.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260685730|ref|YP_003216863.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306519034|ref|ZP_07405381.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|115249359|emb|CAJ67173.1| Transcriptional regulator, RmlC-type [Clostridium difficile] gi|260208295|emb|CBA60727.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260211746|emb|CBE02080.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 183 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 55/159 (34%), Gaps = 10/159 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ I E + ++ + +L+ +A+ +G+ + ++ ++ + P+ ++ K Sbjct: 1 MQSL-NEIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCEVN-----PTISTLKK 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + L++ SD + K + +G + F + ++ + Sbjct: 55 ITNGLKISFTSLMERQESDIELIQ---KSDIDHFIEDNGKYISYPIFPFDSKRRFEIFMI 111 Query: 121 PEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILI 158 + A + + D ++ Sbjct: 112 EIEEGGNLDSNAELPGTQEFITVFSGEVTIKINGEDYIV 150 >gi|46019834|emb|CAE52358.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 113 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + ++ N T +A K G+ ++ +R + P+ +++ +I N + Sbjct: 5 ERLKELRKKANFTQVEVAEKLGISQPAYASWERGVKK-----PTQDNLVRIAQILNVS 57 >gi|49183978|ref|YP_027230.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227816122|ref|YP_002816131.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] gi|254682796|ref|ZP_05146657.1| hypothetical protein BantC_02950 [Bacillus anthracis str. CNEVA-9066] gi|254740143|ref|ZP_05197835.1| hypothetical protein BantKB_03819 [Bacillus anthracis str. Kruger B] gi|49177905|gb|AAT53281.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227003523|gb|ACP13266.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] Length = 92 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + S LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|37527570|ref|NP_930914.1| hypothetical protein plu3706 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527578|ref|NP_930922.1| hypothetical protein plu3715 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787005|emb|CAE16079.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787013|emb|CAE16087.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 120 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 5/92 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + LT LA AG+ + + + P+ E I ++ + + Sbjct: 5 ERLTTLRKERGLTQQALADMAGVAVLQIRRYEGGSAQ-----PTLEVIRRLAISLGVSAD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 L+ G + + + + P Sbjct: 60 MLVFDEQERGPSERLRYQFEAISRMPQYEQEV 91 >gi|83951416|ref|ZP_00960148.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] gi|83836422|gb|EAP75719.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] Length = 219 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 5/78 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + LT LA GL ++ +R PS ++F+I A + Sbjct: 28 LGEEIRNLRKARRLTLGALAEATGLSTGFISQIERAQNR-----PSVTALFRISRALGVS 82 Query: 69 ICQLLDLPFSDGRTTEKK 86 + P Sbjct: 83 VSWFFPGPEVPDSGAPDP 100 >gi|322834304|ref|YP_004214331.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169505|gb|ADW75204.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 182 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 8 ISKGLVRERQRAGLSLAEVARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVALNIP 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 +L++ + + + E + + Sbjct: 63 FARLMEPEVNKMQVIRRGEGPAVVAELADYKA 94 >gi|310818410|ref|YP_003950768.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309391482|gb|ADO68941.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 270 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 1/90 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + L+ LA++ G+ ++ + G++ +I + L + Sbjct: 2 GATLRLLRVEAGLSLRDLAKRIGVSSAYLSRVE-HGLDAVPTPARISAIARELDIPPTLL 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99 + + ++E E L+ + Sbjct: 61 MDVAHRVSPFMASYLEQEPEAGQLFLEIAQ 90 >gi|310827692|ref|YP_003960049.1| hypothetical protein ELI_2103 [Eubacterium limosum KIST612] gi|308739426|gb|ADO37086.1| hypothetical protein ELI_2103 [Eubacterium limosum KIST612] Length = 180 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 5/36 (13%), Positives = 15/36 (41%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 E + R+ ++ LA + + + +K ++ Sbjct: 5 ENLRRIRRERGISQEELAEQLKVSRQAVSKWEQGNG 40 >gi|304314800|ref|YP_003849947.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588259|gb|ADL58634.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 190 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 5/105 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I ++ + N+T LA ++G++ K + I PS + KI Sbjct: 4 NTVGERIKQLRDNQNITLEELAERSGVNRELIKKIEEGDI-----LPSLTPLIKISRTLG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + LLD D +K K +++F + F + Sbjct: 59 VRLGTLLDDRVQDEPVIVRKGKTQRVIHFSGYEESADTSNLNFHS 103 >gi|295694886|ref|YP_003588124.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295410488|gb|ADG04980.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 195 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + + T +A G+ + +R P+ +++KI Sbjct: 10 RIGQILRSLRRDRGWTLDKMAAVTGVSKPMLGQIERGESN-----PTVVTLWKIATGLGV 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 L P + ++ + Sbjct: 65 PFSTFLRDPDDPRVAIVPQSRQPGV 89 >gi|291542133|emb|CBL15243.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 108 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++++ + LA K L ++ +K ++ + + +++ +I + T + + Sbjct: 6 RLKELRVDNDMSQTELAEKLNLKASAISKYEKGITQ--PSIDTLKNLAEIFSVTVDYLIG 63 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPP 97 + D+ + + + +F Sbjct: 64 MSDIKNPYSNSQITPNEADLIEHFRQ 89 >gi|270260961|ref|ZP_06189234.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044445|gb|EFA17536.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 189 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 47/136 (34%), Gaps = 7/136 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS------TESIFKI 61 ++ + + + +R + + LA++ G+ + ++ +R + ++ ++ Sbjct: 11 RLAQRLSDLRQRQSWSLEELAQQTGISRATLSRVERAETSPTASLLNKLCSAYGLTMSRL 70 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 L+ + +LL + P + F G G + P Sbjct: 71 LSEVEDEPPELLRREQQPVWVDRASGFHRRSVSPPAALFKAEFIEGRLEAGAEIAY-DAP 129 Query: 122 EIRSPHNGIYAIQTQD 137 + + + ++ ++ + Sbjct: 130 SVHALEHHLWLLEGRL 145 >gi|229074788|ref|ZP_04207803.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] gi|229096338|ref|ZP_04227311.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|229115293|ref|ZP_04244702.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228668125|gb|EEL23558.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228687298|gb|EEL41203.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|228708300|gb|EEL60458.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] Length = 149 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ E + +A+K G+ + K + +P +++ + N T Sbjct: 3 IGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 + +L+ S E+E Sbjct: 58 LDELIKGNQSFKEKIHIDEEEADFE 82 >gi|261856219|ref|YP_003263502.1| XRE family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836688|gb|ACX96455.1| transcriptional regulator, XRE family [Halothiobacillus neapolitanus c2] Length = 135 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +I + R L+ S +A G+ S ++ G P+ E+I + Sbjct: 1 MQKRLQIGARLKEERTRLRLSQSEIADSLGVSRRSVIDWEKGGAT-----PNAENISDLY 55 Query: 63 AA 64 Sbjct: 56 DF 57 >gi|182438568|ref|YP_001826287.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467084|dbj|BAG21604.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 283 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 18/179 (10%), Positives = 39/179 (21%), Gaps = 29/179 (16%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + E LT LA A + + + R PS E ++ A Sbjct: 6 GEWLKAQREAAGLTQQELADLAFMTRSHIAHIEAG-----RRMPSGEDAQRLDRALGTGN 60 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 P + G + + + Sbjct: 61 VLTSFR--------------------PGAEDDGVLADYFSAARHLEQQATMIREFALSFL 100 Query: 130 IYAIQTQDTRHKTQDTSMLPLYR-KGDILILNSAIQVNCGDRL---LIKPRTGDIVAKV 184 +QT+ + P + D ++ + ++ + + Sbjct: 101 PGILQTEAYARTVLGMAFPPPSPTECDKAVVARLKRAEIFQGARAPVVWAILDESSLRR 159 >gi|209886139|ref|YP_002289996.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209874335|gb|ACI94131.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 485 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + R+ ++ NL+ + +A GL P+ N +R R + + + ++ + Sbjct: 13 VGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQ-----RPVTAQMLLRLAETYDLD 67 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 + L + PL Sbjct: 68 LRDLATSDEDRFFAELNEIFSDPL 91 >gi|197120438|ref|YP_002132389.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196170287|gb|ACG71260.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 134 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H ++ + R LT LA + G+ + + +R P ++ K+ Sbjct: 37 HFRLAAQVLRRRRELGLTQKQLAGRVGIHQSEISDIERGAAT-----PGYRTLAKLA 88 >gi|121636380|ref|YP_976603.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988852|ref|YP_002643539.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121492027|emb|CAL70490.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771965|dbj|BAH24771.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 474 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ ++ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102 >gi|114326843|ref|YP_744000.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315017|gb|ABI61077.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 5/123 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + R+ +R +T + LA +A L +K + PS ++ + A N Sbjct: 44 IGAKVRRLRQRLGITAADLAVEADLSAGMLSKIENGST-----SPSLATLQALSRALNTP 98 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I + + + +G ++ G+ S Sbjct: 99 ISSFFSDFDERRDCSYVPAGMGLSIERRGTKAGHKYELLGHSLGSGLAVEPYLITLSKDA 158 Query: 129 GIY 131 Y Sbjct: 159 APY 161 >gi|92113205|ref|YP_573133.1| hypothetical protein Csal_1077 [Chromohalobacter salexigens DSM 3043] gi|91796295|gb|ABE58434.1| conserved hypothetical protein [Chromohalobacter salexigens DSM 3043] Length = 796 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%) Query: 101 GGFFDSGVFPTGNKWN-TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159 G + E + + SM G + Sbjct: 654 HVPVYDLSIAAGEFSEMQIAEAEHWVELPDFMRVSPDLFVSRVVGESMNRRIPNGAWCLF 713 Query: 160 NSAI-QVNCGDRLLIKPRTGD-------IVAKVLISRR--------GRSIDLMSLNCC-- 201 G ++++ R + K+ S + + I L Sbjct: 714 RMNPGGTRQGKVVVVQHRAIEDPDHGGSFTIKLYQSEKIEEYGEFVNQRIVLKPQTNAFG 773 Query: 202 YPVDTV--EMSDIEWIA 216 Y + E+ D++ I Sbjct: 774 YKDIVLEDELEDLKVIG 790 >gi|91780190|ref|YP_555397.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692850|gb|ABE36047.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 91 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ R+ E + LA AGL+ + + +R S ++ K+ A +I Sbjct: 9 GAAVRRLRELQGWSQEQLAEYAGLNRSYVGEIERGSAIA-----SIVTVDKLARAFGVSI 63 Query: 70 CQ 71 Sbjct: 64 EC 65 >gi|31791644|ref|NP_854137.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|31617230|emb|CAD93337.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] Length = 474 Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ ++ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + ++ L P Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102 >gi|332362028|gb|EGJ39830.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + H+LT AR G+ S ++ + STE I I N + Sbjct: 2 IGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTT 83 ++ Sbjct: 57 YVDIVGEDKMLNPVE 71 >gi|307571667|emb|CAR84846.1| HTH motif/peptidase domain protein [Listeria monocytogenes L99] Length = 208 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 21/218 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAAT 65 + + + + + L+ K GL K + PS E++ KI Sbjct: 7 DLGKELLNLRVKLGLSLREAKEKTGLSHNYIRKLELGFDPSTKTPIEPSVETLKKISLGY 66 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +L+ L + + + + Sbjct: 67 GISFDKLMQLANYSSSIEKNEVIATKVPIYKTLHDMKSKKE---------------TNDF 111 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + S+ + +L+L G+ +L+ + I+ + Sbjct: 112 RLYKQELVSKNAILVEVSNPSLS-KFNSNSLLLLEPYEDSFKGELVLLTTDS-KIIIGHI 169 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + L + T++ D+ I +I+ Q Sbjct: 170 NLFNDKELQLKPI-DSESTVTIKK-DLIMIWKIVEVIQ 205 >gi|304392640|ref|ZP_07374580.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303295270|gb|EFL89630.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 197 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 49/174 (28%), Gaps = 8/174 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I ++ + +LT + LA + G ++ +R PS + + + AA + Sbjct: 19 LGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLS-----SPSIDDLRALAAAFDVP 73 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPH 127 I + + G + G ++ + + Sbjct: 74 ISWFFATEPLNEAERGTVMRADYRRQLGSREGGLVEELLSPDLGGQYEMLRCEFAAGAEM 133 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181 +T+++ + L + G L + + G+ Sbjct: 134 EKPVLRETEESGFIVEGELDLWI--DGTHFHLETGDSFRFDHKPYRWANRGETT 185 >gi|299134624|ref|ZP_07027816.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298590434|gb|EFI50637.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 485 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + R+ ++ NL+ + +A GL P+ N +R R + + + ++ + Sbjct: 13 VGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQ-----RPVTAQMLLRLAETYDLD 67 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 + L + PL Sbjct: 68 LRDLATSDEDRFFAELNEIFSDPL 91 >gi|288574560|ref|ZP_06392917.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570301|gb|EFC91858.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 134 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + E +T LA KA + T + G + PS + + K+ Sbjct: 29 RIKLLRESLGMTQLELAEKADISRTYVQALE-----GNRKTPSVKLLGKLGDILKVDP 81 >gi|288916300|ref|ZP_06410679.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288352279|gb|EFC86477.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 393 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 7/134 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + ++ R N+T LA ++G+ + ++ G + + ++ + L Sbjct: 2 DDVGTRLAQVRRRRNMTQEELAERSGVSADVIRRLEQGRRSG-AQLRTLGALARALDVRT 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + ++ + FP G+ G P G T + Sbjct: 61 SDLLSQDTELDHFDNGDTATLLDVRRILFPAFGTDG------IPDGAPSTTEDLQVRIDR 114 Query: 127 HNGIYAIQTQDTRH 140 Y Sbjct: 115 VRAGYDSGDYHVTL 128 >gi|284920570|emb|CBG33632.1| regulatory protein cro (antirepressor) [Escherichia coli 042] Length = 71 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S E + + +T + LA KAG+ S + + R R+ ++ Sbjct: 1 MQTLS-----ERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK-RPRFLFEIAMAL 54 Query: 61 ILAATN 66 Sbjct: 55 NCDPVW 60 >gi|257875354|ref|ZP_05655007.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257809520|gb|EEV38340.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 396 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R ++ +T LA + S +K + +P S+ + A + + Sbjct: 5 IGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQS-----YPDITSLPLLAAYFDCS 59 Query: 69 ICQ 71 + + Sbjct: 60 VDE 62 >gi|257865722|ref|ZP_05645375.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257872057|ref|ZP_05651710.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257799656|gb|EEV28708.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257806221|gb|EEV35043.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 396 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R ++ +T LA + S +K + +P S+ + A + + Sbjct: 5 IGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQS-----YPDITSLPLLAAYFDCS 59 Query: 69 ICQ 71 + + Sbjct: 60 VDE 62 >gi|239998665|ref|ZP_04718589.1| putative phage associated protein [Neisseria gonorrhoeae 35/02] gi|240013798|ref|ZP_04720711.1| putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240116013|ref|ZP_04730075.1| putative phage associated protein [Neisseria gonorrhoeae PID18] gi|240117623|ref|ZP_04731685.1| putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240125430|ref|ZP_04738316.1| putative phage associated protein [Neisseria gonorrhoeae SK-92-679] gi|260440861|ref|ZP_05794677.1| putative phage associated protein [Neisseria gonorrhoeae DGI2] Length = 89 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 5/69 (7%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + T S LA AGL ++ + + +++ K+ A + ++ Sbjct: 23 SLRMKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 77 Query: 75 LPFSDGRTT 83 Sbjct: 78 AFERRYEYM 86 >gi|228986400|ref|ZP_04146536.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773221|gb|EEM21651.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 374 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 18/189 (9%), Positives = 50/189 (26%), Gaps = 14/189 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + +T LA G+ S +K + +P + + + N + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNVS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I +L+ K F ++ + Sbjct: 61 IDELICYTPQMEPEDIKDLYHRLAEAFSERPFEEVMIECRGMIKKYYSCFPL------LL 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187 + + + + + L + D L+ + + ++++ Sbjct: 115 QMGLLFINHHMLTEDTDKRIEMLEEAMHLFSRVQEE--SDDVSLVKEAVSFQATCYLILN 172 Query: 188 RRGRSIDLM 196 + + L+ Sbjct: 173 KPNEVLQLL 181 >gi|240112583|ref|ZP_04727073.1| putative phage associated protein [Neisseria gonorrhoeae MS11] gi|240121380|ref|ZP_04734342.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|240123181|ref|ZP_04736137.1| putative phage associated protein [Neisseria gonorrhoeae PID332] gi|254493390|ref|ZP_05106561.1| predicted protein [Neisseria gonorrhoeae 1291] gi|268598654|ref|ZP_06132821.1| predicted protein [Neisseria gonorrhoeae MS11] gi|268601681|ref|ZP_06135848.1| predicted protein [Neisseria gonorrhoeae PID18] gi|268603326|ref|ZP_06137493.1| predicted protein [Neisseria gonorrhoeae PID1] gi|268681806|ref|ZP_06148668.1| predicted protein [Neisseria gonorrhoeae PID332] gi|268684027|ref|ZP_06150889.1| predicted protein [Neisseria gonorrhoeae SK-92-679] gi|291044182|ref|ZP_06569894.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398775|ref|ZP_06642943.1| phage associated protein [Neisseria gonorrhoeae F62] gi|226512430|gb|EEH61775.1| predicted protein [Neisseria gonorrhoeae 1291] gi|268582785|gb|EEZ47461.1| predicted protein [Neisseria gonorrhoeae MS11] gi|268585812|gb|EEZ50488.1| predicted protein [Neisseria gonorrhoeae PID18] gi|268587457|gb|EEZ52133.1| predicted protein [Neisseria gonorrhoeae PID1] gi|268622090|gb|EEZ54490.1| predicted protein [Neisseria gonorrhoeae PID332] gi|268624311|gb|EEZ56711.1| predicted protein [Neisseria gonorrhoeae SK-92-679] gi|291011899|gb|EFE03892.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610777|gb|EFF39884.1| phage associated protein [Neisseria gonorrhoeae F62] Length = 153 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 5/69 (7%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + T S LA AGL ++ + + +++ K+ A + ++ Sbjct: 87 SLRMKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 141 Query: 75 LPFSDGRTT 83 Sbjct: 142 AFERRYEYM 150 >gi|217963759|ref|YP_002349437.1| XRE family transcriptional regulator [Listeria monocytogenes HCC23] gi|217333029|gb|ACK38823.1| transcriptional regulator, xre family, putative [Listeria monocytogenes HCC23] Length = 204 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 21/218 (9%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAAT 65 + + + + + L+ K GL K + PS E++ KI Sbjct: 3 DLGKELLNLRVKLGLSLREAKEKTGLSHNYIRKLELGFDPSTKTPIEPSVETLKKISLGY 62 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125 + +L+ L + + + + Sbjct: 63 GISFDKLMQLANYSSSIEKNEVIATKVPIYKTLHDMKSKKE---------------TNDF 107 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185 + + + S+ + +L+L G+ +L+ + I+ + Sbjct: 108 RLYKQELVSKNAILVEVSNPSLS-KFNSNSLLLLEPYEDSFKGELVLLTTDS-KIIIGHI 165 Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 + + L + T++ D+ I +I+ Q Sbjct: 166 NLFNDKELQLKPI-DSESTVTIKK-DLIMIWKIVEVIQ 201 >gi|195977889|ref|YP_002123133.1| transcriptional Regulator Cro/CI family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868776|ref|YP_002744724.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225870268|ref|YP_002746215.1| DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|195974594|gb|ACG62120.1| transcriptional Regulator Cro/CI family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699672|emb|CAW93374.1| putative DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|225702052|emb|CAW99663.1| putative DNA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 71 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + R + + +A AG+ + + +R PS KI NE Sbjct: 4 RLRNRLKELRARDGINQTQMAALAGVSRQTISLIERNEYT-----PSIIIAMKIAKVFNE 58 Query: 68 TICQLLDLPF 77 I Q+ L Sbjct: 59 PIEQVFSLVE 68 >gi|261409180|ref|YP_003245421.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929091|ref|ZP_08282884.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261285643|gb|ACX67614.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328936874|gb|EGG33306.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 139 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 5/115 (4%) Query: 7 KKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I + M E + + LA+ A + + ++ + P +++ K+ A Sbjct: 2 ERIFGSYLKEMRENKGWSINQLAQAADISGSQISRIENGLRG----IPKPQTLRKMAEAL 57 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L++ + K E+ + F ++ V + Sbjct: 58 EVPYEELMNKAGYLQQDAAKHEEIPAPAWATSRDKRDFKKMLEDDGELMFDGVPL 112 >gi|167747793|ref|ZP_02419920.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] gi|167653155|gb|EDR97284.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] Length = 352 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 8/120 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E I + + LT +A G+ + NK ++ ++ ++L Sbjct: 2 KINEMIRELRIKKGLTQEQMASLLGVSAPAVNKWEKAVS--YPDITLLPALARLLET--- 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 L L T+++ + S G + + Sbjct: 57 ---DLNTLLSFKEEPTKEEITDFLNELAADVSSNGAEHAFHMGMEKVREYPSCDPLILNV 113 >gi|163841767|ref|YP_001626172.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162955243|gb|ABY24758.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 79 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 6/78 (7%) Query: 3 SFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +I +I + H +T + LA + G+ + ++ PS E F+I Sbjct: 1 MVKPTRISNSIRGLRFSHGEMTQAELAERIGVTRQTIIAIEQGKY-----SPSLEVAFQI 55 Query: 62 LAATNETICQLLDLPFSD 79 + + P + Sbjct: 56 AGILQVRLEDVFHYPGTQ 73 >gi|163758095|ref|ZP_02165183.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] gi|162284384|gb|EDQ34667.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] Length = 478 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 I R+ LT + +A G+ P+ N +R R + + I K+ Sbjct: 9 GPRIRRIRNAKGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLILKL 55 >gi|154496374|ref|ZP_02035070.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] gi|150274457|gb|EDN01534.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] Length = 307 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 10/109 (9%), Positives = 26/109 (23%), Gaps = 6/109 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR------NRWPSTESIFKIL 62 + + I + L+ GL K G+ + +K + G ++ +L Sbjct: 3 LGQKIQTLRHDAGLSQEGLGEKLGVSRQAISKWEADGAVPEVDKLIALSRLFEVNLHDLL 62 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + + + E + Sbjct: 63 QVEGTSREEPEESGEQPPEEAAENPLEKDQPPRRNGRWWKALCVVLAAA 111 >gi|118587226|ref|ZP_01544654.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118432368|gb|EAV39106.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 143 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + +R+ L+ +A+K + + + ++ S + + KI TN Sbjct: 3 IGQKLQEQRQRNGLSQQQVAQKLNVTRQTVSSWEKDRTIPDPN--SLKKLSKIYHETNIL 60 Query: 69 ICQLLDLP 76 Q + Sbjct: 61 DTQKDNKN 68 >gi|37912891|gb|AAR05227.1| predicted transcriptional regulators [uncultured marine proteobacterium ANT32C12] Length = 65 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + L+ S LA + + N + + PS K+ + Sbjct: 3 NRLKELRADRELSQSALAEILSVSRQTVNSIENGKFD-----PSLTLAIKLTHYFEMPLD 57 Query: 71 QLLDLPF 77 ++ Sbjct: 58 KIFTYQE 64 >gi|59800915|ref|YP_207627.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|194098219|ref|YP_002001274.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|268594519|ref|ZP_06128686.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|59717810|gb|AAW89215.1| hypothetical protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|193933509|gb|ACF29333.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|268547908|gb|EEZ43326.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] Length = 145 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 5/69 (7%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + T S LA AGL ++ + + +++ K+ A + ++ Sbjct: 79 SLRMKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 133 Query: 75 LPFSDGRTT 83 Sbjct: 134 AFERRYEYM 142 >gi|37528594|ref|NP_931939.1| hypothetical protein plu4779 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36788032|emb|CAE17151.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 97 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H ++ E + E+ LT + +A + G+ P + ++ ++ S E I K + Sbjct: 32 HIQLQEEMRSWREQAGLTSAQVAERMGVKPPTISRLEKNADRA-----SIERILKYASVC 86 Query: 66 N 66 Sbjct: 87 G 87 >gi|41057317|ref|NP_958215.1| gene 40 protein [Enterobacteria phage Sf6] gi|191165481|ref|ZP_03027322.1| conserved domain protein [Escherichia coli B7A] gi|194429702|ref|ZP_03062219.1| conserved domain protein [Escherichia coli B171] gi|291281105|ref|YP_003497923.1| gene 40 protein [Escherichia coli O55:H7 str. CB9615] gi|300898213|ref|ZP_07116569.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|331678335|ref|ZP_08379010.1| repressor protein CI [Escherichia coli H591] gi|132193|sp|P03036|RCRO_BP434 RecName: Full=Regulatory protein cro; AltName: Full=Antirepressor gi|230833|pdb|3CRO|L Chain L, The Phage 434 CroOR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION gi|230834|pdb|3CRO|R Chain R, The Phage 434 CroOR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION gi|157834420|pdb|1ZUG|A Chain A, Structure Of Phage 434 Cro Protein, Nmr, 20 Structures gi|157834766|pdb|2CRO|A Chain A, Structure Of Phage 434 Cro Protein At 2.35 Angstroms Resolution gi|14989|emb|CAA23908.1| unnamed protein product [Phage 434] gi|215174|gb|AAA32245.1| cro [Enterobacteria phage lambda] gi|33334196|gb|AAQ12229.1| gene 40 protein [Shigella phage Sf6] gi|190904404|gb|EDV64112.1| conserved domain protein [Escherichia coli B7A] gi|194412261|gb|EDX28566.1| conserved domain protein [Escherichia coli B171] gi|290760978|gb|ADD54939.1| gene 40 protein [Escherichia coli O55:H7 str. CB9615] gi|300358090|gb|EFJ73960.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|324019901|gb|EGB89120.1| helix-turn-helix protein [Escherichia coli MS 117-3] gi|325497800|gb|EGC95659.1| gene 40 protein [Escherichia fergusonii ECD227] gi|331074795|gb|EGI46115.1| repressor protein CI [Escherichia coli H591] Length = 71 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + S E + + +T + LA KAG+ S + + R R+ ++ Sbjct: 1 MQTLS-----ERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK-RPRFLFEIAMAL 54 Query: 61 ILAATN 66 Sbjct: 55 NCDPVW 60 >gi|331018707|gb|EGH98763.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 118 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + H LA G + + ++ +R P+ + + K+ A + Sbjct: 8 IGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGT-----PNLDHLVKLCVALKIS 62 Query: 69 ICQLLDLPFSDGRTTEKK 86 +LL Sbjct: 63 PAELLPADGISSSREHLP 80 >gi|322392180|ref|ZP_08065642.1| transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145080|gb|EFX40479.1| transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 74 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 5/63 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA G+ + + PS E KI Sbjct: 1 MAKESKIITNLKSIRESTGMTQQELADLIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AAT 65 Sbjct: 56 QVF 58 >gi|229157204|ref|ZP_04285284.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] gi|228626268|gb|EEK83015.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] Length = 262 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 6/135 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + ++ + L+ LA K + +K + +P TE + I ++ Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L ++ ++ + G S G + Sbjct: 59 -DYLLKENAEQSNEKENGYYVSKEMAEGYIVYGQKISKYIALGFSLLILSTIPYLLFKED 117 Query: 130 IYAIQTQDTRHKTQD 144 + Sbjct: 118 VTMSTFLVIIIAVFG 132 >gi|261856939|ref|YP_003264222.1| XRE family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261837408|gb|ACX97175.1| transcriptional regulator, XRE family [Halothiobacillus neapolitanus c2] Length = 184 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + + + RH L+ LA++ G+ + + + PS ++ +ILA Sbjct: 2 EQDVGFRLRLVRLRHQLSQRALAKRTGVAHATISLIESGRT-----SPSVSALKRILAGI 56 Query: 66 NETICQLL 73 T+ + Sbjct: 57 PMTLGEFF 64 >gi|254250154|ref|ZP_04943474.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184] gi|124876655|gb|EAY66645.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184] Length = 242 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 38/151 (25%), Gaps = 14/151 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + +T + LA + G ++ +R P+ + I A Sbjct: 71 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 125 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--------TGNKWNTVGVPEIR 124 L + E +Y+ + + G ++ P Sbjct: 126 YSLSKPRSVPWVTRPDERRTVYYAAGITDILVSPNMRSRFSILESHLGPGASSGERPVDD 185 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155 S G + ++ + D Sbjct: 186 SDEQGGFVLEGEL-TIWIDGDDTPVTLGPND 215 >gi|123442353|ref|YP_001006332.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161719|ref|YP_004298296.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089314|emb|CAL12161.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605784|emb|CBY27282.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325665949|gb|ADZ42593.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 107 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 9/80 (11%) Query: 8 KIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 +I +A + +R NLT +AR+AGL + ++ ++ I P+ ++ + A Sbjct: 33 QIRQAMMTELKAARQRCNLTQEDIARRAGLRKQNISRMEKGII-----SPNLTTLSRYAA 87 Query: 64 ATNETICQLLDLPFSDGRTT 83 A T Sbjct: 88 ALGGTFVFKFTQKPRCTSKE 107 >gi|91783405|ref|YP_558611.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687359|gb|ABE30559.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 88 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 5/78 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + ++ E+ L +A + G T ++ + G R + +L A Sbjct: 16 ARLKQLREQRGLHQQAVAERLGRTQTYVSRYESGG-----RRLDLIELLDVLVALGADPH 70 Query: 71 QLLDLPFSDGRTTEKKEK 88 + +D + + Sbjct: 71 EFIDRVLEQPLKALPRGQ 88 >gi|159184446|ref|NP_353767.2| hypothetical protein Atu0743 [Agrobacterium tumefaciens str. C58] gi|159139759|gb|AAK86552.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 264 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 36/147 (24%), Gaps = 15/147 (10%) Query: 4 FSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 +H + + + + R L+ LA +A + + + PS E + K+ Sbjct: 1 MTHHREHVGQVLKEWRARRRLSQLDLAIEADISARHLSFVESGRS-----SPSREMLAKL 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 + L + G E+ + + + P Sbjct: 56 AEQLSMPARAANRLMLAAGYAPVHSERSLDAPDMAAARQAVETVVHG--------HMPFP 107 Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML 148 + + + S Sbjct: 108 ALAVDRHWNVVLANDAITSLLAGVSAE 134 >gi|325970790|ref|YP_004246981.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324026028|gb|ADY12787.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 91 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 5/83 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +AI + N+T L +A L + + R P ++ I +A + + Sbjct: 6 IGQAIKALRLAQNMTQEELIERADLSRSQLYYIESG-----KRTPRLPTMQSICSALSVS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91 + + T+ Sbjct: 61 FLEFVLYLDQYSPTSCTPNISSM 83 >gi|314937137|ref|ZP_07844484.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|313655756|gb|EFS19501.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 292 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 48/156 (30%), Gaps = 8/156 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S++ +++ + I + ++ LT + G + ++ P+ + + Sbjct: 7 MYSYNKEQVGKRIKSIRQQKGLTQESFGKLFGASKGNVATWEKGIS-----LPNASRLRE 61 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 I + T+ +LL F D K P S + + + Sbjct: 62 IADLVSITVEELLYGEFVDNFQLVKLLNNNPNELENMIKSNIKAFFNLL---DDFEYYEY 118 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156 + Y ++ Q+ Y++ D Sbjct: 119 TIVIPKSQRFYFVKLQNRILLAISLENKSTYQEKDN 154 >gi|313633469|gb|EFS00293.1| signal peptidase I [Listeria seeligeri FSL N1-067] gi|313638159|gb|EFS03415.1| signal peptidase I [Listeria seeligeri FSL S4-171] Length = 188 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 7/78 (8%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI--VAKVLISRRGRSIDLMS 197 SM P G+ L +N D ++ + K +I G ++ Sbjct: 36 VTVNGKSMDPTLHDGEHLFINKVSNPERFDIIVFPAPDEENAEYIKRVIGLPGDKVEYKQ 95 Query: 198 L----N-CCYPVDTVEMS 210 N Y ++ Sbjct: 96 DQLYINGKAYDEPYLDSE 113 >gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 185 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + +T GL T +K + R P ++ KI + +T Sbjct: 96 IGARLKAIRKDEGMTQGEFGALVGLTHTGISKIETGH-----RTPEIKTALKIKRSLGKT 150 Query: 69 ICQLLDLPFSDGRTTEK 85 + + + Sbjct: 151 LDWIYFGDEEIIPKKNR 167 >gi|289434552|ref|YP_003464424.1| hypothetical protein lse_1187 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170796|emb|CBH27338.1| sipX [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 188 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 7/78 (8%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI--VAKVLISRRGRSIDLMS 197 SM P G+ L +N D ++ + K +I G ++ Sbjct: 36 VTVNGKSMDPTLHDGEHLFINKVSNPERFDIIVFPAPDEENAEYIKRVIGLPGDKVEYKQ 95 Query: 198 L----N-CCYPVDTVEMS 210 N Y ++ Sbjct: 96 DQLYINGKAYDEPYLDSE 113 >gi|257468163|ref|ZP_05632259.1| putative phage transposase [Fusobacterium ulcerans ATCC 49185] gi|317062448|ref|ZP_07926933.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313688124|gb|EFS24959.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 322 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 6/51 (11%), Positives = 25/51 (49%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 +++ A+++ ++ ++ S +A+ G+ ++ ++ + G T+ Sbjct: 2 REELMLALEQFSQERGMSYSKIAKAMGIGASTLSEIRSGKYNGETETIYTK 52 >gi|229828089|ref|ZP_04454158.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] gi|229792683|gb|EEP28797.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] Length = 327 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +++ + LA K + S +K + G P I ++ + Sbjct: 3 LADKIIDLRKKNGWSQEELAEKLDVSRQSVSKWE-----GARSVPDMNKILRLSEVFAVS 57 >gi|228478000|ref|ZP_04062611.1| conserved domain protein [Streptococcus salivarius SK126] gi|312862473|ref|ZP_07722716.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322515930|ref|ZP_08068871.1| cro/CI family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|228250180|gb|EEK09433.1| conserved domain protein [Streptococcus salivarius SK126] gi|311102116|gb|EFQ60316.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322125604|gb|EFX96934.1| cro/CI family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 65 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + + ++ + LA + G+ + ++ S E FKI +TI ++ Sbjct: 5 IQELRKANKISQAELADEMGVTRQTIISLEKGRYNA-----SLELAFKIARYFGKTIEEV 59 Query: 73 LDLPF 77 Sbjct: 60 FIFEE 64 >gi|226322393|ref|ZP_03797911.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] gi|225209193|gb|EEG91547.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] Length = 109 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 5/87 (5%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + +++ T +A G+ ++ + + R P E++ KI N + LL Sbjct: 9 KNLRMQNHYTQGQMADLLGISRSAVSMYETGN-----REPDLETLEKIAKFFNVDMNYLL 63 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + + E Sbjct: 64 GSSVTVTSDNPEPSYEDIEQMIARGSH 90 >gi|218515232|ref|ZP_03512072.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 238 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 46/177 (25%), Gaps = 22/177 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T + LA G+ +K + I PS ++ + A Sbjct: 51 IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 105 Query: 69 ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + R + + LL + G T Sbjct: 106 LTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYNLLGHIDNNPSGVIVEPYLITLTA 165 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + V +Y ++ + + + + GD L ++ + Sbjct: 166 DSDVFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 219 >gi|215401114|ref|YP_002332369.1| repressor [Staphylococcus phage phiSauS-IPLA35] gi|215260465|gb|ACJ64595.1| gp6 [Staphylococcus phage phiSauS-IPLA35] Length = 84 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 2/71 (2%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + E + + N+ LA G+ + + + R + + Sbjct: 7 RKILSENLQELMNDKNIDQRELAEAIGVSQPTVSNWIQQTK--YPRIKRIQQLADYFNVP 64 Query: 66 NETICQLLDLP 76 I + Sbjct: 65 KSRITESKKRY 75 >gi|153953935|ref|YP_001394700.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854549|ref|YP_002471671.1| hypothetical protein CKR_1206 [Clostridium kluyveri NBRC 12016] gi|146346816|gb|EDK33352.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568273|dbj|BAH06257.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 179 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 55/173 (31%), Gaps = 13/173 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + +++ LA +A L ++ +R PS +++KI A N +I Sbjct: 7 IRKLRQEKSISIEQLAERAKLSTGLISQVERNIT-----GPSVTTLWKIAKALNVSINYF 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 D K +++ +L + + E + + Sbjct: 62 FDEYEEKDNVVRKDKRKTIILPDSKITYELLSPNLKGKIEYLLVEIEAGECNTKDLICHE 121 Query: 133 IQTQDTR----HKTQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPRT 177 + K + + + +GD + +S + ++++ Sbjct: 122 GEECGYIIKGTLKVKLGNKEYILEEGDSIYFDSNVPHRYINVGNEKVISIWAM 174 >gi|326381819|ref|ZP_08203512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199245|gb|EGD56426.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 125 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 2/91 (2%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE--GRNRWPSTESIFKILAATNE 67 + + + L+ LA + GL + + +R P +++++ A Sbjct: 19 GHRLVTVRKARGLSQEELAERCGLHRNAVSNLERATSNSASGIADPLLSTVYRLARALEV 78 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 L+ S +++ L + Sbjct: 79 PPTYLMPGADSRIGLRAAEQETNQALSEVEA 109 >gi|311897674|dbj|BAJ30082.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 247 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 5/108 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + T + LA KAG+D S + R P + A E + Sbjct: 4 ERLKAVMASGGWTCAALAEKAGVDTKSVERWANQN-----RTPRLGTARLAAEALGEDMF 58 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 L + + L F + + + + Sbjct: 59 ALWPSLRQRRAARAISPELVALYEQRADLPVSVFVDLMAKATERIDVL 106 >gi|262283609|ref|ZP_06061374.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260666|gb|EEY79367.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 67 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + ++ + LT + LA+ + + + K + S E+ K+ Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSRYGKYENGKTN-----LSIENAKKVAKYFG 53 >gi|302528605|ref|ZP_07280947.1| predicted protein [Streptomyces sp. AA4] gi|302437500|gb|EFL09316.1| predicted protein [Streptomyces sp. AA4] Length = 197 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 11/142 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ I R+ +T LA + GL P + ++R S S+F I A Sbjct: 9 RVGAEIKRVRSSLGMTLRELAERCGLSPGFLSLAERGVN-----SISLTSLFAIAGALEV 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +LL R + G + V + V R Sbjct: 64 DAVELLGSAGKRSRAEYAVSRRDD--PRAARVVMGEREHRVLTAELPDQHIEVLATRVNP 121 Query: 128 NGIYAI----QTQDTRHKTQDT 145 + ++ + Sbjct: 122 TNAPSPVTRHDGEEFCYVVSGE 143 >gi|296109709|ref|YP_003616658.1| transcriptional regulator, XRE family [Methanocaldococcus infernus ME] gi|295434523|gb|ADG13694.1| transcriptional regulator, XRE family [Methanocaldococcus infernus ME] Length = 307 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 E + R+ E ++ LA G+ + K + + PS + KI Sbjct: 125 GETLKRVREEKKISVGELAEAVGVSRKTIYKYENYSAN-----PSVDIAIKIEEYL 175 >gi|257386498|ref|YP_003176271.1| XRE family transcriptional regulator [Halomicrobium mukohataei DSM 12286] gi|257168805|gb|ACV46564.1| transcriptional regulator, XRE family [Halomicrobium mukohataei DSM 12286] Length = 69 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 14/36 (38%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I E+ L+ LA G+ + N +R + Sbjct: 5 IATYREQEGLSQGELAAAVGVSRQTINAVERERYDP 40 >gi|261346291|ref|ZP_05973935.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] gi|282565603|gb|EFB71138.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] Length = 99 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++KI I L+ LA + ++ +R S E+I +L A Sbjct: 4 NEKIGNFIRNARVSKGLSEKELASLISVSQQQISRYERGIST-----LSIENILILLNAL 58 Query: 66 NETICQL 72 N + Sbjct: 59 NIPFDEF 65 >gi|157147315|ref|YP_001454634.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895] gi|157084520|gb|ABV14198.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895] Length = 182 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I +++ R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A Sbjct: 8 IAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVAL 59 >gi|153812180|ref|ZP_01964848.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] gi|149831835|gb|EDM86921.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] Length = 208 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 7/64 (10%), Positives = 21/64 (32%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI + ++ + + LA + + ++ + P + I + Sbjct: 12 KIGNFLKKLRKEKGIIQEQLAEILNVSGRTVSRWETGNN-----MPDISILVDIADYYDI 66 Query: 68 TICQ 71 +I + Sbjct: 67 SIPE 70 >gi|145541473|ref|XP_001456425.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124424236|emb|CAK89028.1| unnamed protein product [Paramecium tetraurelia] Length = 386 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 28/82 (34%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K + I + ++HN+ LAR+ G+ ++ + + + R + S +I Sbjct: 1 MQIQKDLKSRIQEILQKHNIKQVDLAREIGIHHSTLSLWMQNKNKPRKQDISNSQSTRIE 60 Query: 63 AATNETICQLLDLPFSDGRTTE 84 I T + Sbjct: 61 ELLERWIATFHANKGQGMGTGQ 82 >gi|146306349|ref|YP_001186814.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145574550|gb|ABP84082.1| putative transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 106 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + E L+P LAR G+ P +R R S+ L + Sbjct: 50 LEQLQALREAKGLSPEALARSVGISPHYLAMIERGER--RPDAAILRSLAWTLGLEGWS 106 >gi|110598649|ref|ZP_01386915.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031] gi|110339761|gb|EAT58270.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031] Length = 129 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I R+ ++ NL+ + LA G+ +F++ +R R P + + I N Sbjct: 68 DVGADIRRIRKKLNLSQAELASLFGVGKMAFSRYERGES--RPPVPLVKLLKLIDRHPN 124 >gi|29375148|ref|NP_814301.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|256852520|ref|ZP_05557895.1| transcriptional regulator [Enterococcus faecalis T8] gi|256964687|ref|ZP_05568858.1| CylR2 [Enterococcus faecalis HIP11704] gi|257085876|ref|ZP_05580237.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|307272302|ref|ZP_07553561.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|21693300|gb|AAM75247.1|AF454824_42 EF0042 [Enterococcus faecalis] gi|29342607|gb|AAO80372.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256712067|gb|EEU27100.1| transcriptional regulator [Enterococcus faecalis T8] gi|256955183|gb|EEU71815.1| CylR2 [Enterococcus faecalis HIP11704] gi|256993906|gb|EEU81208.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|306511024|gb|EFM80035.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|315027717|gb|EFT39649.1| helix-turn-helix protein [Enterococcus faecalis TX2137] Length = 66 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + E+ ++ S LA + + N ++ PS + KI + Sbjct: 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYN-----PSLQLALKIAYYLDTP 56 Query: 69 ICQLLDLP 76 + + Sbjct: 57 LEDIFQWQ 64 >gi|37524551|ref|NP_927895.1| hypothetical protein plu0545 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525105|ref|NP_928449.1| hypothetical protein plu1137 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525114|ref|NP_928458.1| hypothetical protein plu1146 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783975|emb|CAE12840.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784531|emb|CAE13431.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784540|emb|CAE13440.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 111 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + I + + LT + LA+ + + + R + I K+L Sbjct: 4 LGQRISALRKHAGLTQAQLAQALNVSQQAVQSWEAGRR--RIQISVLPEIAKLL 55 >gi|15679328|ref|NP_276445.1| hypothetical protein MTH1328 [Methanothermobacter thermautotrophicus str. Delta H] gi|3219928|sp|O27383|Y1328_METTH RecName: Full=Uncharacterized HTH-type transcriptional regulator MTH_1328 gi|2622434|gb|AAB85806.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 69 Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + LT LA + G+ + ++ PS +I A + Sbjct: 5 IREHRKELGLTQEELAERVGVTRQTIIALEKGRY-----SPSLILAHRIARALGREHIED 59 Query: 73 LDLPF 77 + + Sbjct: 60 IFILD 64 >gi|322433358|ref|YP_004210575.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321165747|gb|ADW71448.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 84 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + LA AG+ + + E R + +I AA Sbjct: 21 LGERIYALITERGWSQKKLAELAGIHADYVHDVEYGKKEICLR-----MLARISAALGCK 75 Query: 69 ICQLLDLPF 77 + +L+ Sbjct: 76 MSDMLEGME 84 >gi|296170451|ref|ZP_06852039.1| XRE family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894922|gb|EFG74643.1| XRE family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 83 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 15/39 (38%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 ++ E + R LA + G+ + ++ +R Sbjct: 13 ELGEHLRRARRARGFQQGELADRIGVTRMTISRLERGES 51 >gi|291523310|emb|CBK81603.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 336 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I +++ + LA + G+ + +K + G P + I ++ + Sbjct: 3 LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAV-----PDLQRILQMSELFCVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 LL T + E Sbjct: 58 TDYLLKDEMKAENITYHESSESYAEPL 84 >gi|291521732|emb|CBK80025.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 217 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I LT +A G+ + + + +P S+ K+ + Sbjct: 4 DIGCKIKEARIEKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 58 Query: 68 T 68 + Sbjct: 59 S 59 >gi|227524839|ref|ZP_03954888.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227087996|gb|EEI23308.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 89 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 A+ E LT + LA +A + ++ + +R + + + +I A +T Sbjct: 32 ALYHTREEAGLTQADLAERANVPQSTIARIERGDNV------TFDKLAEIAHAMGKT 82 >gi|222083000|ref|YP_002542365.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727679|gb|ACM30768.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 205 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H ++ + + +T LA A + +K + PS + +++ Sbjct: 21 HGRLGTRLRLARQMLGMTLKALAVAADCSESLLSKIENGKA-----SPSLPMLHRLVEVL 75 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 I + + + + + P G + P Sbjct: 76 GTNIGWMFEEADGEEGIVFRAGTRPLIGLDPLRRGEGISLERIIPYSPG 124 >gi|189024717|ref|YP_001935485.1| Cro/CI family transcriptional regulator [Brucella abortus S19] gi|254689793|ref|ZP_05153047.1| transcriptional regulator, Cro/CI family protein [Brucella abortus bv. 6 str. 870] gi|254694283|ref|ZP_05156111.1| transcriptional regulator, Cro/CI family protein [Brucella abortus bv. 3 str. Tulya] gi|254697936|ref|ZP_05159764.1| transcriptional regulator, Cro/CI family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730827|ref|ZP_05189405.1| transcriptional regulator, Cro/CI family protein [Brucella abortus bv. 4 str. 292] gi|256045229|ref|ZP_05448127.1| transcriptional regulator, Cro/CI family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256114182|ref|ZP_05454936.1| transcriptional regulator, Cro/CI family protein [Brucella melitensis bv. 3 str. Ether] gi|256258046|ref|ZP_05463582.1| transcriptional regulator, Cro/CI family protein [Brucella abortus bv. 9 str. C68] gi|189020289|gb|ACD73011.1| transcriptional regulator, Cro/CI family [Brucella abortus S19] gi|326409629|gb|ADZ66694.1| transcriptional regulator, Cro/CI family [Brucella melitensis M28] Length = 43 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 + I R+ LT + +A G+ P+ N +R Sbjct: 8 VGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERN 43 >gi|94272166|ref|ZP_01292081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93450214|gb|EAT01505.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 100 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + + LT L K GL + ++ + ++ R S + + L Sbjct: 2 DNIVKKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDM--RLSSFLEMARFLD 56 >gi|116628536|ref|YP_821155.1| transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116101813|gb|ABJ66959.1| transcriptional regulator [Streptococcus thermophilus LMD-9] gi|312279170|gb|ADQ63827.1| Putative transcriptional regulator [Streptococcus thermophilus ND03] Length = 65 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + + ++ + LA + G+ + ++ S E FKI +TI ++ Sbjct: 5 IQELRKANKISQAELADEMGVTRQTIILLEKGRYNA-----SLELAFKIARYFGKTIEEV 59 Query: 73 LDLPF 77 Sbjct: 60 FIFEE 64 >gi|328945084|gb|EGG39239.1| transcriptional regulator [Streptococcus sanguinis SK1087] Length = 74 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MARESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|327191632|gb|EGE58643.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 225 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 22/177 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T + LA G+ +K + I PS ++ + A Sbjct: 38 IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 92 Query: 69 ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + R + + LL + S G T Sbjct: 93 LTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYNLLGHIDNNSSGVIVEPYLITLTA 152 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + V +Y ++ + + + + GD L ++ + Sbjct: 153 DSDVFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 206 >gi|317492341|ref|ZP_07950770.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919680|gb|EFV41010.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 186 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 8/84 (9%) Query: 1 MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 MT S H I + + + ++ + A+ G+ + +R P+ +++ Sbjct: 1 MTDLSLH--IGQTLRDLRQQRGWSLDKTAQATGVSKAMLGQIERGES-----SPTVVTLW 53 Query: 60 KILAATNETICQLLDLPFSDGRTT 83 +I + + + L +D Sbjct: 54 RISSGLQASFSEFLPKQLTDAEPA 77 >gi|297560612|ref|YP_003679586.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845060|gb|ADH67080.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 272 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 + + + ++ + LT LA A + ++ + +R +G R P Sbjct: 13 RFGKLLRKLRGQAGLTQQELAALAVVSQSTVSDLERG-KKGTRRDP 57 >gi|325679879|ref|ZP_08159448.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108317|gb|EGC02564.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 119 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + +++ + LA +A + +K + + + +I A + Sbjct: 11 IGERIKQARKELDISQTELAERADISVPYLSKIEMGKSD-----FGVSVLIRISEALQIS 65 >gi|268611514|ref|ZP_06145241.1| hypothetical protein RflaF_18676 [Ruminococcus flavefaciens FD-1] Length = 64 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 6/56 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E I + L+ LA KAG+ + + + S S KI A Sbjct: 7 EIIKARRMKLGLSQKELAEKAGVSANTVYNVETG------KSASLTSYKKICDALE 56 >gi|260888585|ref|ZP_05899848.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330838124|ref|YP_004412704.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260861782|gb|EEX76282.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329745888|gb|AEB99244.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 97 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + I AI NLT +A K G+ ++ + R PS + + + Sbjct: 24 MEPERNIIRAIVEARIAQNLTQKEVAEKTGIAQAELSRMENG-----LRNPSIKLLQRFA 78 Query: 63 AATN 66 Sbjct: 79 EGLG 82 >gi|229165969|ref|ZP_04293734.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] gi|228617522|gb|EEK74582.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] Length = 149 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|256825655|ref|YP_003149615.1| Peptidase S24-like protein [Kytococcus sedentarius DSM 20547] gi|256689048|gb|ACV06850.1| Peptidase S24-like protein [Kytococcus sedentarius DSM 20547] Length = 115 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 17/98 (17%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-----DIVAKV--LISRRGRSI 193 + SM P R GD++++ V G ++ + G + K G ++ Sbjct: 7 RVAGRSMEPTLRPGDLVVVLHGAPVRPGRLVVCRLPDGPMGARPLGIKRAVCRRIDGGTV 66 Query: 194 --DLMSLNCCYPVDT-----VEMSDIEWIA--RI-LWA 221 + S N D+ V +D+ + R+ W Sbjct: 67 AWWVRSDNQDQGTDSRTFGAVPAADVLAVGLARVPRWV 104 >gi|225019958|ref|ZP_03709150.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum DSM 5476] gi|224947322|gb|EEG28531.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum DSM 5476] Length = 126 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 6/56 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + H L LA+ + ++ + + + P ++ K+ + Sbjct: 7 LKDLRTYHGLKQKELAKAINVSSSTISGYENG------KNPDYNTLVKLANYFKVS 56 >gi|218508625|ref|ZP_03506503.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 225 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 22/177 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T + LA G+ +K + I PS ++ + A Sbjct: 38 IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 92 Query: 69 ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + R + + LL + S G T Sbjct: 93 LTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYNLLGHIDNNSSGVIVEPYLITLTA 152 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + V +Y ++ + + + + GD L ++ + Sbjct: 153 DSDVFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 206 >gi|190895653|ref|YP_001985945.1| transcriptional regulator [Rhizobium etli CIAT 652] gi|190699598|gb|ACE93682.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 231 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 22/177 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T + LA G+ +K + I PS ++ + A Sbjct: 40 IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 94 Query: 69 ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + R + + LL + S G T Sbjct: 95 LTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYNLLGHIDNNSSGVIVEPYLITLTA 154 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + V +Y ++ + + + + GD L ++ + Sbjct: 155 DSDVFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 208 >gi|154252262|ref|YP_001413086.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156212|gb|ABS63429.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 72 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 7/71 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + + R+ + LT A +G + ++ R P+ ++++ Sbjct: 1 MDM--RKTVGGNVRRIRLKKGLTQEQFAEISGFSQQYISGLEQG-----RRNPTVVTLYE 53 Query: 61 ILAATNETICQ 71 + A + Sbjct: 54 LATALGVSHLD 64 >gi|172060084|ref|YP_001807736.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171992601|gb|ACB63520.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 219 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 7/120 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA ++G+ + + +R P+ + K+ A Sbjct: 15 NERIARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASA-----SPTAVVLDKLAAGL 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEI 123 ++ L D + + P+ + +P+ + V P Sbjct: 70 GVSLAGLFGGDRDDAPAQPLVRRAQQAEWRDPASGYVRRNLSPPGWPSPIQLVEVDFPPG 129 >gi|62182502|ref|YP_218919.1| hypothetical protein SC3932 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130135|gb|AAX67838.1| hypothetical protein SCH_3932 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|320088451|emb|CBY98210.1| Uncharacterized HTH-type transcriptional regulator ydcN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716998|gb|EFZ08569.1| hypothetical protein SCA50_4196 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132385|gb|ADX19815.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 204 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I ++ R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A Sbjct: 30 IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVAL 81 >gi|186685172|ref|YP_001868368.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467624|gb|ACC83425.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 84 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAA 64 KI + I + ++ +L+ A K G+ + N+ + E + K+ Sbjct: 8 KISDLIRELRQQLDLSQEKFAAKLGVSLRTVNRWENGSTVPSQMALKLIEEMLQKMGEP 66 >gi|332637058|ref|ZP_08415921.1| hypothetical protein WcibK1_00055 [Weissella cibaria KACC 11862] Length = 127 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 6/120 (5%) Query: 1 MTSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M S K I I R+ ++ +T + LA G+ + + +P + I Sbjct: 1 MASSEGKAIMGRNIKRLIKQREITAARLAEIVGVSTATISDWSNGKT-----YPRIDKIE 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 + + L++ P E + ++ SG + + Sbjct: 56 AMADYFGVSKSDLVEDPDKVSTAVATDEPVLMAAHWGLDISGLPDEDRHRVIDRAKAYIE 115 >gi|325694303|gb|EGD36217.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 94 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + E+ + + +A G + + + + S+ ++ + Sbjct: 2 LGKQLKLIREQKGYSQAQIAESLGTTRQTISNWENDKTI-----LDSASLIRLADFYQIS 56 Query: 69 ICQLL 73 + +L Sbjct: 57 LDELC 61 >gi|310826476|ref|YP_003958833.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] gi|308738210|gb|ADO35870.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] Length = 148 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 18/44 (40%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 + ++ + +R L+ +A K G+ + +K + R Sbjct: 3 LGNSLYKARKRTGLSQEEVAEKLGVSRQTISKWETNETLPDIRQ 46 >gi|229056271|ref|ZP_04195692.1| Transcriptional regulator [Bacillus cereus AH603] gi|228721076|gb|EEL72614.1| Transcriptional regulator [Bacillus cereus AH603] Length = 217 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 6/92 (6%) Query: 1 MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M S++++ I ++ + L+ L +DP + ++ + P + + Sbjct: 1 MPKENSNERLSTLIKKLLKERALSMRQLGMLTNIDPATISRIMNG-----KQPPKQKHLQ 55 Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 K L D + + K++ ++ Sbjct: 56 KFAEFLQVPPQLLFDEMYPNSPHINKEKTDMY 87 >gi|227545534|ref|ZP_03975583.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227184485|gb|EEI64556.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 119 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 1/78 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I +T LA L ++ +R +E R + I K L T E Sbjct: 3 KIGVNISHRRHELKMTQEELANATDLSTNYVSRLERGEVE-YIRALTLSKIAKGLKTTME 61 Query: 68 TICQLLDLPFSDGRTTEK 85 + + Sbjct: 62 KLIDGNTNQQHIRGHYQS 79 >gi|255102292|ref|ZP_05331269.1| putative phage DNA-binding protein [Clostridium difficile QCD-63q42] Length = 254 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 8/133 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + + ++ ++ LT LA + + + + R P+ +++ K+ A Sbjct: 2 QIGKNLKKIRKQKELTQIQLAEISDISRNALINYEND-----KRIPNIDTLSKLAKALKI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + E + L FD + N + S Sbjct: 57 EKTIFYFDIEN---EVITNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLL 113 Query: 128 NGIYAIQTQDTRH 140 G ++ + Q + Sbjct: 114 LGAWSDKDQYYKL 126 >gi|206974889|ref|ZP_03235804.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222095479|ref|YP_002529539.1| hypothetical protein BCQ_1819 [Bacillus cereus Q1] gi|206746908|gb|EDZ58300.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221239537|gb|ACM12247.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 146 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 5/110 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + ++ E + +A+K G+ + K + P +++ + N T Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----CPDIDNLILLSEMYNVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 + +L+ + E++ G F + + + Sbjct: 58 LDELIKGNQNIKEKIHIDEEDEDFEKENDFGFYIGFGLLIMSAFIDYEKI 107 >gi|88855521|ref|ZP_01130185.1| Transcriptional regulator, MerR family protein [marine actinobacterium PHSC20C1] gi|88815428|gb|EAR25286.1| Transcriptional regulator, MerR family protein [marine actinobacterium PHSC20C1] Length = 169 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 14/126 (11%), Positives = 32/126 (25%), Gaps = 8/126 (6%) Query: 22 LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81 +T + LA K+ L P ++ +R PS ++ ++ + + Sbjct: 1 MTLAQLAAKSELSPAIVSQIERGKAN-----PSFTTLAQLAHGLEIPVGRFFVGHAEPAS 55 Query: 82 TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPHNGIYAIQTQDT 138 + L G + P N + P + ++ Sbjct: 56 PVVRSGDRRNLKGVTRESVGEAVHELLTPEQNGLIEAQWIVSPPGHDTSATPFHHGGEEF 115 Query: 139 RHKTQD 144 Sbjct: 116 GIVMSG 121 >gi|150017031|ref|YP_001309285.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903496|gb|ABR34329.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 112 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I ER+ LT + + PT ++ + R PS + KI + + Sbjct: 11 DIGKRIKAERERNGLTREKFSELVSISPTYLSQIELGQ-----RHPSLPTTIKIASTLHI 65 Query: 68 T 68 + Sbjct: 66 S 66 >gi|325289203|ref|YP_004265384.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964604|gb|ADY55383.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 117 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 K++ AI +NLT LA A + + + +R PS E ++K++ Sbjct: 3 LDRKRLGGAIKNARLENNLTQEELAELADIATVHMKQLEAG-----SRNPSIEVLYKLVR 57 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 N ++ + +DGR + K + P + + Sbjct: 58 LLNLSVDAVFFPERADGRELQHKIERRLNHCSPHELNMIY 97 >gi|317495853|ref|ZP_07954216.1| signal peptidase I [Gemella moribillum M424] gi|316914030|gb|EFV35513.1| signal peptidase I [Gemella moribillum M424] Length = 183 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 3/82 (3%) Query: 116 NTVGVPEIRSPHNGIYAIQTQDTR--HKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLL 172 + + IY + + + SM + D + +N + GD ++ Sbjct: 6 DIFEWIVVIVASIAIYLVLSTYVIAPFTVKGHSMDYTFADNDRVFVNKFSKTFERGDEVV 65 Query: 173 IKPRTGDIVAKVLISRRGRSID 194 D K +I G +I+ Sbjct: 66 FHANETDDYIKRIIGVPGDTIE 87 >gi|283768814|ref|ZP_06341725.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104600|gb|EFC05973.1| DNA-binding protein [Bulleidia extructa W1219] Length = 331 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 5/92 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + +++ + LA + + S +K + G P I K+ + Sbjct: 3 LADKIITLRKKNGWSQEELADQLEVSRQSVSKWE-----GAQSIPDMNKILKLSKVFGVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 LL + E + S Sbjct: 58 TDYLLKDEIVIAENETQPETDNHSAEVSVSME 89 >gi|295699801|ref|YP_003607694.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439014|gb|ADG18183.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 104 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + ++ ++ LA +AGL T + +R R +++ + AA + Sbjct: 21 IAKNLRLLRDKKGMSQEVLADRAGLHRTQLSVIERG-----LRNMRLDTLVSLAAALGVS 75 Query: 69 ICQ 71 + Sbjct: 76 ETE 78 >gi|261392144|emb|CAX49650.1| putative HTH-type transcriptional regulator [Neisseria meningitidis 8013] Length = 117 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 2/84 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + + + LA L ++ +R G+ I L Sbjct: 13 IGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGV--GKINISHLVDIAVFLETPIAW 70 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 Q T + E Sbjct: 71 FFQDCLPKPLTVACTPENTPEQQW 94 >gi|260459675|ref|ZP_05807929.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034477|gb|EEW35734.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 285 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + R +L S A G+D ++ ++ R P E++ I A ++ Sbjct: 12 ERLKLLLTRSDLNQSAFATAVGIDRSALSQLMSGAS---TRLPRAETLLNIAAEFKVSLD 68 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 LL L +G T + +E + P G + F VP Sbjct: 69 WLLGLSQDEGVTG--EIRESLEIEEAPDGFDRTLLAKWFAEAAGTKIRYVPAGIPDLLRT 126 Query: 131 YAI 133 +A+ Sbjct: 127 HAL 129 >gi|228992527|ref|ZP_04152454.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] gi|229006074|ref|ZP_04163762.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228755150|gb|EEM04507.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228767161|gb|EEM15797.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] Length = 123 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ + +NLT L +K L ++ + + R P +++ K + Sbjct: 2 IGENLRKLRKTNNLTMKELGQKLNLAESTISGYENGN-----RKPDYDTLNKFADFFEVS 56 >gi|162448892|ref|YP_001611259.1| hypothetical protein sce0622 [Sorangium cellulosum 'So ce 56'] gi|161159474|emb|CAN90779.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 202 Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ I + I + + +LT +AR+ GL + ++ +R S S++KI A Sbjct: 137 HRVIGDTIRNLRKDKDLTLKQMARRTGLSVSLLSQIERAESSA-----SISSLYKIAVAL 191 Query: 66 NETICQLLDLP 76 I L Sbjct: 192 ESRIQDLFGHY 202 >gi|326941347|gb|AEA17243.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 262 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57 >gi|325262607|ref|ZP_08129344.1| DNA-binding protein [Clostridium sp. D5] gi|324032439|gb|EGB93717.1| DNA-binding protein [Clostridium sp. D5] Length = 365 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 17/39 (43%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 KI E I + LT LAR G+ + NK ++ Sbjct: 2 KIHEMIRCKRKEMGLTQEELARYLGVSAPAVNKWEKGLS 40 >gi|313897061|ref|ZP_07830608.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974508|gb|EFR39976.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 103 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+ E ++ L G+ + +R P ++ K+LA +T Sbjct: 34 LITALVNAREEKGISQRQLEELTGIKQPQIARMERGDAN-----PQLGTLLKVLAPLGKT 88 >gi|296504134|ref|YP_003665834.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|296325186|gb|ADH08114.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 262 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57 >gi|296327851|ref|ZP_06870387.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154985|gb|EFG95766.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 209 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 7/136 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I R+ + NL+ LA+ + + + + +R P+ +++KI + Sbjct: 35 VSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGN-----PTLSTLWKIANGMQVS 89 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L+ P + T+ E E L + F + V + S + Sbjct: 90 FNTLIAQPKLPYKVTKLAEIEPILDMNGGLKNYSLFSD--IENNFSVYQIEVGKEISWIS 147 Query: 129 GIYAIQTQDTRHKTQD 144 + T + Q Sbjct: 148 EAHLRGTAEFVIVIQG 163 >gi|296167102|ref|ZP_06849512.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897544|gb|EFG77140.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 256 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + AI + E + + + LA G+ + +R R P ++ KI Sbjct: 1 MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSFLERGA-----RKPHKSTVQKIEN 55 Query: 64 ATN 66 Sbjct: 56 GLG 58 >gi|293401719|ref|ZP_06645861.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304977|gb|EFE46224.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 139 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + ++ LA + + + +K +R P + + + + Sbjct: 4 ENLKTLRIEKGMSQQFLADQLHVTRQTISKWERGLSV-----PDADMLIALSEMFEVS 56 >gi|229012804|ref|ZP_04169973.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] gi|228748485|gb|EEL98341.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] Length = 262 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57 >gi|229028813|ref|ZP_04184915.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] gi|228732500|gb|EEL83380.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] Length = 149 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|229061195|ref|ZP_04198545.1| Helix-turn-helix domain protein [Bacillus cereus AH603] gi|228718066|gb|EEL69706.1| Helix-turn-helix domain protein [Bacillus cereus AH603] Length = 262 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57 >gi|229117089|ref|ZP_04246469.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] gi|228666378|gb|EEL21840.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] Length = 262 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57 >gi|168215895|ref|ZP_02641520.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] gi|182382138|gb|EDT79617.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] Length = 170 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + + LT A+K K + +E P E + +I A + Sbjct: 3 NIGDKIKAIRKERGLTQKEFAKKINKSERMIQKYENSEVE-----PRIEVLREIATALDI 57 Query: 68 TICQ 71 + + Sbjct: 58 SFSE 61 >gi|218898722|ref|YP_002447133.1| helix-turn-helix domain protein [Bacillus cereus G9842] gi|218540740|gb|ACK93134.1| helix-turn-helix domain protein [Bacillus cereus G9842] Length = 262 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57 >gi|42782702|ref|NP_979949.1| helix-turn-helix domain-containing protein [Bacillus cereus ATCC 10987] gi|42738628|gb|AAS42557.1| helix-turn-helix domain protein [Bacillus cereus ATCC 10987] Length = 262 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57 >gi|77463742|ref|YP_353246.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77388160|gb|ABA79345.1| Predicted transcriptional regulators [Rhodobacter sphaeroides 2.4.1] Length = 428 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + ++ E + L + LAR AG+ + N + R E + + Sbjct: 3 MTALTGSRVRER----RLQLGLRQADLARAAGISASYLNLIEHN-----RRRIGDEVLAR 53 Query: 61 ILAAT 65 + A Sbjct: 54 LARAL 58 >gi|29375989|ref|NP_815143.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29343451|gb|AAO81213.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 107 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ LT + +A G+ T+++ ++ R P + KI N ++ Sbjct: 3 GTRLTELRKQKKLTQTDVANALGVARTTYSSYEQG-----RRTPDIDIQNKIADYFNVSL 57 Query: 70 CQLLDLPFS 78 L Sbjct: 58 DYLHGRESF 66 >gi|163941236|ref|YP_001646120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863433|gb|ABY44492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 262 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + L+ LA K + +K + +P TE + I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57 >gi|134299415|ref|YP_001112911.1| cupin 2 domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052115|gb|ABO50086.1| Cupin 2, conserved barrel domain protein [Desulfotomaculum reducens MI-1] Length = 180 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I+E + + + N+T L+ K GL + ++ +R + S+ KI A N Sbjct: 2 EEIFEKVRTLRNQKNMTLKDLSEKTGLSVSFLSQVERGTS-----SLAITSLKKIADALN 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKE 89 I + TT E++ Sbjct: 57 VHIASFFANYSNTNFTTRADEQK 79 >gi|126462571|ref|YP_001043685.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|332558597|ref|ZP_08412919.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides WS8N] gi|126104235|gb|ABN76913.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC 17029] gi|332276309|gb|EGJ21624.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 428 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + ++ E + L + LAR AG+ + N + R E + + Sbjct: 3 MTALTGSRVRER----RLQLGLRQADLARAAGISASYLNLIEHN-----RRRIGDEVLAR 53 Query: 61 ILAAT 65 + A Sbjct: 54 LARAL 58 >gi|317481961|ref|ZP_07940986.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916528|gb|EFV37925.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 362 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + NLT LA G+ + +K + +P + + I T+ Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59 Query: 71 Q 71 Sbjct: 60 D 60 >gi|296453479|ref|YP_003660622.1| transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182910|gb|ADG99791.1| Predicted transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] Length = 356 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + NLT LA G+ + +K + +P + + I T+ Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59 Query: 71 Q 71 Sbjct: 60 D 60 >gi|295090423|emb|CBK76530.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 171 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + + L+ L+ K + + +K ++ P + + + + + Sbjct: 4 ENIKNLRKAKGLSQEELSVKLNVVRQTVSKWEKGLSV-----PDSNMLISLADELDTS 56 >gi|291517434|emb|CBK71050.1| Predicted transcriptional regulators [Bifidobacterium longum subsp. longum F8] Length = 356 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + NLT LA G+ + +K + +P + + I T+ Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59 Query: 71 Q 71 Sbjct: 60 D 60 >gi|284006480|emb|CBA71741.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 96 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 18/42 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 I + I + L+ LA+K G+ ++ +R + + Sbjct: 6 NIGKMIKFKRKEKGLSGELLAKKIGVSQQPLSRYERGVNDIK 47 >gi|229102450|ref|ZP_04233157.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] gi|228680935|gb|EEL35105.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] Length = 149 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + ++ E + +A+K G+ + K + +P +++ + N T Sbjct: 3 IGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 + +L+ S E+E Sbjct: 58 LDELIKGNQSFKEKIHIDEEEADFE 82 >gi|227545776|ref|ZP_03975825.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213892|gb|EEI81731.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 362 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + NLT LA G+ + +K + +P + + I T+ Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59 Query: 71 Q 71 Sbjct: 60 D 60 >gi|254502669|ref|ZP_05114820.1| bacteriophage CI repressor protein, putative [Labrenzia alexandrii DFL-11] gi|222438740|gb|EEE45419.1| bacteriophage CI repressor protein, putative [Labrenzia alexandrii DFL-11] Length = 147 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + L+ + LAR+ G+ ++ + E R + IL + Sbjct: 41 LGERICKARDIAGLSTAQLARRLGIKTSTLQSWESDRSE--PRSNKLILLAGILNVSPTW 98 >gi|254486796|ref|ZP_05100001.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214043665|gb|EEB84303.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 132 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + E +T + LA++ G+ + + E R + IL + Sbjct: 16 GDRVAAAREHAQMTQAALAKRLGVKQATLRAWEDDLSE--PRANRLSMLAGILGVSMMW 72 >gi|218297117|ref|ZP_03497788.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23] gi|218242531|gb|EED09069.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23] Length = 214 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 53/211 (25%), Gaps = 20/211 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IFKILAATNE 67 + + LT GLAR AG + K +R ++ R S + + K L Sbjct: 14 ARLVERRKALGLTQEGLARLAGFSTSLMAKIERGAVD--LRSLSAQHVVGLAKALGLPLN 71 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + P P G V + Sbjct: 72 ALLDEDLPGGEVAKPLLLPVYRAPEDLAREDVERFAITPEQVPPGA---EVSRLAYLTLP 128 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + + ++ V G +++ G A + Sbjct: 129 GRWFTTLDVPFPLT-----------RRVHVMAELRPLVRPGGVYVVRHGEGMGFATD-EA 176 Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218 RG + L L+ P +E E + + Sbjct: 177 LRGSRLALYPLDPSLPTLWLEGERPEVVGLV 207 >gi|169350968|ref|ZP_02867906.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM 1552] gi|169292030|gb|EDS74163.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM 1552] Length = 335 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + +++ + LA+K + S +K + G P + I + Sbjct: 17 LADKIIELRKKNGWSQEQLAQKLNVTRQSISKWE-----GEQSVPDLQKIILLSEIFG 69 >gi|149914872|ref|ZP_01903401.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] gi|149811060|gb|EDM70897.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] Length = 207 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E + + + T A +AGL ++ +K + + P+ E++ K+ Sbjct: 26 NLGERVRDLRKSRGWTLEQAASQAGLARSTLSKIENGQM-----SPTYEALKKLAVGLEI 80 Query: 68 TICQLLDLPFS 78 ++ QL P Sbjct: 81 SVPQLFTPPQR 91 >gi|159901339|ref|YP_001547586.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894378|gb|ABX07458.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 123 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S S + I I R R LT + L K G+ + + + R E + + Sbjct: 1 MASLS-EAIGAIIKRKRSRDRLTQNDLGAKVGVSGSYISAVEAGNTS--PRIAEVEGLAQ 57 Query: 61 ILAAT 65 + T Sbjct: 58 VFRTT 62 >gi|17229533|ref|NP_486081.1| hypothetical protein asr2041 [Nostoc sp. PCC 7120] gi|17131132|dbj|BAB73740.1| asr2041 [Nostoc sp. PCC 7120] Length = 80 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 KI + I + LT A G+ + N+ + + + + I ++ Sbjct: 11 QPKIGQFIQEIRLVMGLTQEEFAVILGVTFPTVNRWENGHT--KPSKLAIQQIEALVDKL 68 Query: 66 NET 68 E Sbjct: 69 GED 71 >gi|329729091|gb|EGG65502.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] Length = 175 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I ++ + +T S LA + + + + ++I KI N Sbjct: 2 NIGDNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKN-----LGIKTIEKIAKKLNV 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|327393941|dbj|BAK11363.1| HTH-type transcriptional regulator HipB [Pantoea ananatis AJ13355] Length = 79 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S +++ + + +++ T LA+K GL + + + S ++FKIL A Sbjct: 4 SPRQLANQVRLLRQQNGWTQVELAKKVGLKQATLSHFENA-----PDTTSLATLFKILQA 58 Query: 65 T 65 Sbjct: 59 L 59 >gi|325522132|gb|EGD00789.1| hypothetical protein B1M_29795 [Burkholderia sp. TJI49] Length = 110 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Query: 7 KKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + A+ + + LT + +A + G ++ ++ + + PS ++ K A Sbjct: 41 EEEFTALRALLDARKEAGLTQAQVAERMGTTTSAVSRLEASLSSEK-HSPSFATLRKYAA 99 Query: 64 ATN 66 A Sbjct: 100 ACG 102 >gi|323358883|ref|YP_004225279.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275254|dbj|BAJ75399.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 474 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + I I ++ LT LA G P+ + + E + ++I + Sbjct: 1 MDTLT---IGRRIRQLRTARGLTLDDLATAVGRAPSQMSMIENGRREAKLTL--LQAIAR 55 Query: 61 ILAA 64 L Sbjct: 56 ALEC 59 >gi|306832595|ref|ZP_07465734.1| cro/CI family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304425203|gb|EFM28330.1| cro/CI family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 70 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 5/72 (6%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++ I + + ++ + LA + + ++ S E KI Sbjct: 2 EEEMKTKIQELRKASKISQAELAEALDVTRQTIISLEKGRYNA-----SLELAHKIAKYF 56 Query: 66 NETICQLLDLPF 77 +TI ++ Sbjct: 57 GKTIEEIFIFED 68 >gi|291617504|ref|YP_003520246.1| HipB [Pantoea ananatis LMG 20103] gi|291152534|gb|ADD77118.1| HipB [Pantoea ananatis LMG 20103] Length = 79 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 S +++ + + +++ T LA+K GL + + + S ++FKIL A Sbjct: 4 SPRQLANQVRLLRQQNGWTQVELAKKVGLKQATLSHFENA-----PDTTSLATLFKILQA 58 Query: 65 T 65 Sbjct: 59 L 59 >gi|260437982|ref|ZP_05791798.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809608|gb|EFF68813.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 129 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/108 (8%), Positives = 25/108 (23%), Gaps = 9/108 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + ++ LA G+ + + + + I Sbjct: 3 IGQKIKELRIKKGISVDALAEATGISRATLYRYEN----ASIHKIPVACLESICRVLGVK 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 L++ S+ + P ++ Sbjct: 59 TSDLMEDTDSNQLEELPQAFNNPQEALSFILKMPA-----LAAYGGYD 101 >gi|256789090|ref|ZP_05527521.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 190 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 19/149 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS ++ KI A Sbjct: 9 QSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKW 115 +I LLD ++ + L + + G Sbjct: 64 VSITTLLDWEQGPAVRVVPADEAVRLWHTDAGSFSRLLAGVEAPGPLEMWEWRLMPGESS 123 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + P + + + + Sbjct: 124 LSDPHPTGTVE---LVHVTSGELALTVDG 149 >gi|254719904|ref|ZP_05181715.1| hypothetical protein Bru83_10224 [Brucella sp. 83/13] gi|265984912|ref|ZP_06097647.1| transcriptional regulatory protein [Brucella sp. 83/13] gi|264663504|gb|EEZ33765.1| transcriptional regulatory protein [Brucella sp. 83/13] Length = 75 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 7/77 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + R+ LT + ++G + ++ R P+ ++++ Sbjct: 1 MDM--RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQG-----RRNPTVITLYE 53 Query: 61 ILAATNETICQLLDLPF 77 + A + +L Sbjct: 54 LAQALGVSHVELFKPDE 70 >gi|240016239|ref|ZP_04722779.1| putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|317163944|gb|ADV07485.1| putative phage associated protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 99 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 5/69 (7%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 + + T S LA AGL ++ + + +++ K+ A + ++ Sbjct: 33 SLRMKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 87 Query: 75 LPFSDGRTT 83 Sbjct: 88 AFERRYEYM 96 >gi|237794603|ref|YP_002862155.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|229262963|gb|ACQ53996.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] Length = 136 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 18/124 (14%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I ++ + N+T L + G+ + + R PS E + KI + + Sbjct: 2 LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNA-----RKPSYEVLIKIAEFFSVS 56 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 LL+ T + +K ++ V PE + Sbjct: 57 TDFLLNTEEKLDMTLDSVKKVYNMVKEAT-------------EEYGIEEVNQPEKQENKI 103 Query: 129 GIYA 132 A Sbjct: 104 KTLA 107 >gi|228969513|ref|ZP_04130324.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228790215|gb|EEM37986.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 10/88 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M E + + + T L GL + + + R +S+ K Sbjct: 1 MVMR-----GERVKTLRKMKGWTQDELGAAVGLKKAAISGIENN-----KRDRGEKSVSK 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK 88 T LL +E+ + Sbjct: 51 FAEVFGCTADYLLGFSDDPALNSEQNLR 78 >gi|229010113|ref|ZP_04167327.1| hypothetical protein bmyco0001_5810 [Bacillus mycoides DSM 2048] gi|228751246|gb|EEM01058.1| hypothetical protein bmyco0001_5810 [Bacillus mycoides DSM 2048] Length = 72 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N T S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 38 >gi|229092281|ref|ZP_04223456.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] gi|228691098|gb|EEL44864.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] Length = 374 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + K F Sbjct: 56 YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99 >gi|229126111|ref|ZP_04255132.1| hypothetical protein bcere0015_5740 [Bacillus cereus BDRD-Cer4] gi|228657318|gb|EEL13135.1| hypothetical protein bcere0015_5740 [Bacillus cereus BDRD-Cer4] Length = 72 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N T S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 38 >gi|222110532|ref|YP_002552796.1| hypothetical protein Dtpsy_1331 [Acidovorax ebreus TPSY] gi|221729976|gb|ACM32796.1| protein of unknown function DUF955 [Acidovorax ebreus TPSY] Length = 401 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 6/118 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + ++ L+ + LA G+ P + +K + + P E++ ++ N T Sbjct: 12 ERLSQILAARRLSQAQLASLVGVSPATVSKWRSGN-----QAPERETLERLAGVVNVTPE 66 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 P + + + + + V P + P Sbjct: 67 WFTRAPSAKVSLPLFRSNASAHV-AARAMLEARMEWAQDVALALSEFVDYPTLNLPIR 123 >gi|218234849|ref|YP_002365477.1| DNA-binding protein [Bacillus cereus B4264] gi|228906437|ref|ZP_04070319.1| hypothetical protein bthur0013_6180 [Bacillus thuringiensis IBL 200] gi|228943013|ref|ZP_04105518.1| hypothetical protein bthur0008_56190 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951183|ref|ZP_04113298.1| hypothetical protein bthur0006_6090 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228975931|ref|ZP_04136452.1| hypothetical protein bthur0003_56560 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229108292|ref|ZP_04237911.1| hypothetical protein bcere0018_5800 [Bacillus cereus Rock1-15] gi|229143408|ref|ZP_04271837.1| hypothetical protein bcere0012_5790 [Bacillus cereus BDRD-ST24] gi|229149021|ref|ZP_04277266.1| hypothetical protein bcere0011_5900 [Bacillus cereus m1550] gi|296501436|ref|YP_003663136.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|218162806|gb|ACK62798.1| DNA-binding protein [Bacillus cereus B4264] gi|228634561|gb|EEK91145.1| hypothetical protein bcere0011_5900 [Bacillus cereus m1550] gi|228640036|gb|EEK96437.1| hypothetical protein bcere0012_5790 [Bacillus cereus BDRD-ST24] gi|228675129|gb|EEL30354.1| hypothetical protein bcere0018_5800 [Bacillus cereus Rock1-15] gi|228783767|gb|EEM31825.1| hypothetical protein bthur0003_56560 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228808480|gb|EEM54984.1| hypothetical protein bthur0006_6090 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816677|gb|EEM62797.1| hypothetical protein bthur0008_56190 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853207|gb|EEM97982.1| hypothetical protein bthur0013_6180 [Bacillus thuringiensis IBL 200] gi|296322488|gb|ADH05416.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326938457|gb|AEA14353.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 72 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N T S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 38 >gi|206967781|ref|ZP_03228737.1| DNA-binding protein [Bacillus cereus AH1134] gi|229068368|ref|ZP_04201671.1| hypothetical protein bcere0025_5830 [Bacillus cereus F65185] gi|229188891|ref|ZP_04315924.1| hypothetical protein bcere0002_5820 [Bacillus cereus ATCC 10876] gi|206736701|gb|EDZ53848.1| DNA-binding protein [Bacillus cereus AH1134] gi|228594596|gb|EEK52382.1| hypothetical protein bcere0002_5820 [Bacillus cereus ATCC 10876] gi|228714829|gb|EEL66701.1| hypothetical protein bcere0025_5830 [Bacillus cereus F65185] Length = 72 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N T S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 38 >gi|163801055|ref|ZP_02194955.1| hypothetical protein 1103602000593_AND4_02293 [Vibrio sp. AND4] gi|159175404|gb|EDP60201.1| hypothetical protein AND4_02293 [Vibrio sp. AND4] Length = 269 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/101 (8%), Positives = 28/101 (27%), Gaps = 8/101 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + + A+ + + LT L+ K G+ ++F + ++ Sbjct: 1 MRELTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTFKRHLTSTNLALDKLLEYCRAVD 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + + + K+ + + Sbjct: 61 CTLDELQKLANQLQAEDQDYFSHTQDEVFFQFPHLYDFYRE 101 >gi|156974376|ref|YP_001445283.1| hypothetical protein VIBHAR_02091 [Vibrio harveyi ATCC BAA-1116] gi|156525970|gb|ABU71056.1| hypothetical protein VIBHAR_02091 [Vibrio harveyi ATCC BAA-1116] Length = 269 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/101 (8%), Positives = 28/101 (27%), Gaps = 8/101 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + + A+ + + LT L+ K G+ ++F + ++ Sbjct: 1 MRELTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTFKRHLTSTNLALDKLLEYCRAVD 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + + + K+ + + Sbjct: 61 CTLDELQKLANQLQAEDQDYFSHTQDEVFFQFPHLYDFYRE 101 >gi|153835799|ref|ZP_01988466.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|148867457|gb|EDL66843.1| conserved hypothetical protein [Vibrio harveyi HY01] Length = 269 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/101 (8%), Positives = 28/101 (27%), Gaps = 8/101 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53 M + + + A+ + + LT L+ K G+ ++F + ++ Sbjct: 1 MRELTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTFKRHLTSTNLALDKLLEYCRAVD 60 Query: 54 -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 + + + K+ + + Sbjct: 61 CTLDELQKLANQLQAEDQDYFSHTQDEVFFQFPHLYDFYRE 101 >gi|126348551|emb|CAJ90275.1| putative transcriptional regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 190 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 6/124 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS ++ KI A Sbjct: 9 QSLARNVKRWRGERGFTLETLAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125 +I LLD E+ I L + P W +P S Sbjct: 64 ISITTLLDREQGPTVRVVPAERAIRLWHTDAGSFSRLLAGVEAPGPLELWEWRLMPGESS 123 Query: 126 PHNG 129 P + Sbjct: 124 PSDP 127 >gi|120536951|ref|YP_957009.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326785|gb|ABM21094.1| transcriptional regulator, XRE family [Marinobacter aquaeolei VT8] Length = 229 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 20/54 (37%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + I ++ E ++ LAR+ GL + ++ + E K+ Sbjct: 6 QFGTRIKQIREIRKISQGFLARQVGLTQATISRIESGIPEATASLLDMARALKV 59 >gi|34764995|ref|ZP_00145314.1| LexA repressor [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885664|gb|EAA23087.1| LexA repressor [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 71 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 4/49 (8%) Query: 175 PRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219 + K L + + I L S N Y + + R++ Sbjct: 14 YYNDEGYIKRLEMKDKLKIITLKSDNPDYDDIDIPEEMQEYFQINGRVV 62 >gi|30263282|ref|NP_845659.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528657|ref|YP_020006.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186132|ref|YP_029384.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65320613|ref|ZP_00393572.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165869231|ref|ZP_02213891.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631940|ref|ZP_02390267.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637201|ref|ZP_02395481.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685020|ref|ZP_02876245.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170705153|ref|ZP_02895618.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650111|ref|ZP_02933112.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564884|ref|ZP_03017805.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813847|ref|YP_002813856.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602441|ref|YP_002867542.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685897|ref|ZP_05149756.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254738367|ref|ZP_05196070.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742466|ref|ZP_05200151.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752683|ref|ZP_05204719.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761198|ref|ZP_05213222.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257916|gb|AAP27145.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503805|gb|AAT32481.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180059|gb|AAT55435.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164715957|gb|EDR21474.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514708|gb|EDR90074.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532238|gb|EDR94874.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130008|gb|EDS98870.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671280|gb|EDT22018.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084063|gb|EDT69122.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564201|gb|EDV18165.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227004554|gb|ACP14297.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229266849|gb|ACQ48486.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 374 Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + K F Sbjct: 56 YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99 >gi|329927927|ref|ZP_08281955.1| cupin domain protein [Paenibacillus sp. HGF5] gi|328938146|gb|EGG34542.1| cupin domain protein [Paenibacillus sp. HGF5] Length = 189 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 5/99 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 HKK+ + + + L+ +A G+ + +R P+ +++I++ Sbjct: 5 HKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSN-----PTISVLWRIVSGL 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + L++ ++ + E F Sbjct: 60 GISFTTLIEEAETEVTVVAPDDVEPFHEAEGAYRVHPLF 98 >gi|328955766|ref|YP_004373099.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456090|gb|AEB07284.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 72 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 1 MTSFSHKKIWEAIDRMAERH-NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M+ ++I I + ++ L+ +G A + G+D + F ++ + + + Sbjct: 1 MSDSVDQQIGARIRCLRKKRTGLSQNGFACQIGIDRSYFATIEQG-----KHSATLQMLA 55 Query: 60 KILAATNETICQ 71 +I ++ + Sbjct: 56 RISQGLGVSLQE 67 >gi|325263349|ref|ZP_08130084.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324031742|gb|EGB93022.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 354 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + + +T LA G+ + +K + P + + A Sbjct: 3 ENLGAHIAALRKTKGMTQEQLAAVLGISAPAVSKWETDSS-----CPDITLLCPLARALG 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 + LL + + + Sbjct: 58 TNLDTLLQFEETLTDEQIAEHINQIIE 84 >gi|309774761|ref|ZP_07669783.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308917446|gb|EFP63164.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 7/83 (8%) Query: 1 MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + K+ +AI + +R +T LA G S + + P + + Sbjct: 1 MKKVTEINLKVGDAIRKGLQRKGMTQKELAMLVGSTQRSISSYINGNAQ-----PPLDIL 55 Query: 59 FKILAATNETICQLLDLPFSDGR 81 I + Q+L +P + Sbjct: 56 SLICRILEINMNQILQIPDYNFP 78 >gi|262066094|ref|ZP_06025706.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] gi|291380189|gb|EFE87707.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] Length = 184 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 5/88 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + ++ LA K L + ++ ++ PS E++ KI + Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 + L++ D R E + Sbjct: 58 VAYLIEDEEDDIRNIEHVKAANVRYIES 85 >gi|254723300|ref|ZP_05185088.1| DNA-binding protein [Bacillus anthracis str. A1055] Length = 374 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + K F Sbjct: 56 YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99 >gi|253754652|ref|YP_003027792.1| DNA-binding protein [Streptococcus suis BM407] gi|251817116|emb|CAZ54837.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 119 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K++ + I + NL+ LA K + + ++ + P + + ++ Sbjct: 2 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSEWENGEAT-----PDIDKLVQLAEIFG 56 Query: 67 ET 68 + Sbjct: 57 VS 58 >gi|226305590|ref|YP_002765550.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229489625|ref|ZP_04383488.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] gi|226184707|dbj|BAH32811.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229323722|gb|EEN89480.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] Length = 187 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I A+ + LT +A K+GL ++++ PS ++ ++ + T Sbjct: 12 IGAAVRTARKEAGLTLREVAVKSGLSQPFLSQTENGHAV-----PSVMNLHRLAQSLGTT 66 Query: 69 IC 70 Sbjct: 67 AH 68 >gi|207723399|ref|YP_002253798.1| transcription regulator protein [Ralstonia solanacearum MolK2] gi|206588598|emb|CAQ35561.1| probable transcription regulator protein [Ralstonia solanacearum MolK2] Length = 96 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 5/76 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + + LA AG++ + K +R P+ IF+I A + Sbjct: 26 GAAVRALRAERGIAQESLANLAGIERSHVGKVERGE-----HMPTLAIIFRIAGALECST 80 Query: 70 CQLLDLPFSDGRTTEK 85 L+ S Sbjct: 81 AVLMTETESQLAAARS 96 >gi|254382154|ref|ZP_04997515.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194341060|gb|EDX22026.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 269 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 5/73 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + + R ++ LA +AG + + GR R PS E + + Sbjct: 1 MTPTTTSSVGALLRTWRGRRGISQLELAGRAGSSSRHISFVE----TGRAR-PSEELLLR 55 Query: 61 ILAATNETICQLL 73 + + + + Sbjct: 56 LADQLDVPVRERN 68 >gi|218439098|ref|YP_002377427.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171826|gb|ACK70559.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424] Length = 533 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S ++I A +R ++ LA+ G + +R + + KIL Sbjct: 478 LSAEQILTA----RKRQGISQRELAQLIGKSQSWIRDLERGRFTAKPED--QLRLQKILN 531 >gi|167748986|ref|ZP_02421113.1| hypothetical protein ANACAC_03767 [Anaerostipes caccae DSM 14662] gi|167651608|gb|EDR95737.1| hypothetical protein ANACAC_03767 [Anaerostipes caccae DSM 14662] Length = 371 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 8/107 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + + +T LA G+ S +K + +P + + Sbjct: 3 MKEL---NLSNILVKKRKEKGITQDQLAAYIGVSKASVSKWETGQS-----YPDITFLPQ 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 + A N ++ +L+ + +K F + F+ Sbjct: 55 LAANFNMSVDELIGYKPQMTKEDIRKLYLRLAKDFSQKPAKEVFEEC 101 >gi|154506244|ref|ZP_02042982.1| hypothetical protein RUMGNA_03786 [Ruminococcus gnavus ATCC 29149] gi|153793743|gb|EDN76163.1| hypothetical protein RUMGNA_03786 [Ruminococcus gnavus ATCC 29149] Length = 162 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 1 MTSFSH------KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 M ++ +KI + + + N+T LA K+G++ K + + Sbjct: 1 MYMLTYRLRGEMEKIMAELKELRKFMNMTQKELAEKSGINLRQIQKYEYGEYD 53 >gi|167645630|ref|YP_001683293.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348060|gb|ABZ70795.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 64 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + + + LA + + + N + + PS FKI Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYD-----PSLPLAFKIARLFG 53 >gi|89891794|ref|ZP_01203296.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] gi|89515949|gb|EAS18614.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] Length = 269 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 5/139 (3%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + ++ I ++ + LT L ++ + + + + P + +I IL+ Sbjct: 1 MNQPELGNYIAQLRKEKGLTQEELVELCNINVRTIQRIENGDVT-----PRSYTIKNILS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 A ++I + LL + + G + + + Sbjct: 56 ALGKSIDDVFKSVEKKAADLPAITYNKSLLGWGMIAGIIYLILGTLNVLVSISEMYHTVL 115 Query: 124 RSPHNGIYAIQTQDTRHKT 142 SP +I + Sbjct: 116 VSPSVYGVSITMEYLTLTM 134 >gi|40063589|gb|AAR38378.1| helix-turn-helix domain protein [uncultured marine bacterium 582] Length = 121 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + E ++ S +A++ G+ ++ K ++ E R S Sbjct: 5 GDRLAAAREHAAMSQSDMAKRLGVKVSTLRKWEQDLSEPRANRLSM 50 >gi|62317249|ref|YP_223102.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269230|ref|YP_418521.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189022510|ref|YP_001932251.1| Helix-turn-helix motif [Brucella abortus S19] gi|237816809|ref|ZP_04595801.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|254690756|ref|ZP_05154010.1| Helix-turn-helix motif [Brucella abortus bv. 6 str. 870] gi|254698535|ref|ZP_05160363.1| Helix-turn-helix motif [Brucella abortus bv. 2 str. 86/8/59] gi|254731982|ref|ZP_05190560.1| Helix-turn-helix motif [Brucella abortus bv. 4 str. 292] gi|256255939|ref|ZP_05461475.1| Helix-turn-helix motif [Brucella abortus bv. 9 str. C68] gi|260544487|ref|ZP_05820308.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260756327|ref|ZP_05868675.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759755|ref|ZP_05872103.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762994|ref|ZP_05875326.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882151|ref|ZP_05893765.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297249296|ref|ZP_06932997.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62197442|gb|AAX75741.1| transcriptional regulator, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939504|emb|CAJ12476.1| Helix-turn-helix motif:Cupin domain [Brucella melitensis biovar Abortus 2308] gi|189021084|gb|ACD73805.1| Helix-turn-helix motif [Brucella abortus S19] gi|237787622|gb|EEP61838.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|260097758|gb|EEW81632.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260670073|gb|EEX57013.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673415|gb|EEX60236.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676435|gb|EEX63256.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260871679|gb|EEX78748.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297173165|gb|EFH32529.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 182 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + R NL+ A++AG+ ++ + + PS ++ +IL Sbjct: 4 DIGGRLRYVRMRQNLSQREFAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58 Query: 68 TICQLL 73 + + Sbjct: 59 GMAEFF 64 >gi|89100265|ref|ZP_01173131.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911] gi|89085003|gb|EAR64138.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911] Length = 116 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I AI + ER NLT LA K + ++ K + + P T++I KI + Sbjct: 4 IGLAIKQNRERLNLTQQELAVKLRIGTSTIEKYENGCQQ-----PDTQTILKISTILDVP 58 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL+ F+ +T E E LL Sbjct: 59 ASELLEHGFTACQTGLDPELEQLLLET 85 >gi|89071275|ref|ZP_01158446.1| transcriptional regulator, XRE family protein [Oceanicola granulosus HTCC2516] gi|89043205|gb|EAR49438.1| transcriptional regulator, XRE family protein [Oceanicola granulosus HTCC2516] Length = 134 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 15/40 (37%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + + E L+ LAR+ G+ + + E R Sbjct: 21 GDRLAAAREAAGLSQKDLARRLGVKHQTLKHWEDDIAEPR 60 >gi|323128283|gb|ADX25580.1| XRE family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 155 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 17/50 (34%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 + + +++ LT + LA + + + +K + R Sbjct: 1 MDKQTILALKLKDYRDKNGLTQAQLAEQLEVSDKTISKWENGETYPSKRN 50 >gi|306821502|ref|ZP_07455104.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550460|gb|EFM38449.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 73 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 5/74 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +D + + LT A+K + + + + PS + F+I N+T Sbjct: 3 LKNKLDELRKLKGLTQEEFAKKLRVSRQTISAIENGKYN-----PSLDLAFEIAIYFNKT 57 Query: 69 ICQLLDLPFSDGRT 82 I ++ D Sbjct: 58 IEEIFTYEKEDNHE 71 >gi|300715480|ref|YP_003740283.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299061316|emb|CAX58425.1| transcriptional regulator [Erwinia billingiae Eb661] Length = 182 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ R R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 8 IAASLARERTRAGLSLAEVARRAGIAKSTLSQLESANGN-----PSIETLWALCGALNIP 62 Query: 69 I 69 Sbjct: 63 F 63 >gi|221639612|ref|YP_002525874.1| Helix-turn-helix domain-containing protein [Rhodobacter sphaeroides KD131] gi|221160393|gb|ACM01373.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides KD131] Length = 428 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + ++ E + L + LAR AG+ + N + R E + + Sbjct: 3 MTALTGSRVRER----RLQLGLRQADLARAAGISASYLNLIEHN-----RRRIGDEVLAR 53 Query: 61 ILAAT 65 + A Sbjct: 54 LARAL 58 >gi|254386728|ref|ZP_05002021.1| regulatory protein [Streptomyces sp. Mg1] gi|194345566|gb|EDX26532.1| regulatory protein [Streptomyces sp. Mg1] Length = 197 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 13/161 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC-- 70 + + R LT A +A L P ++ + R PS + + T+ Sbjct: 8 LRDLRRRAGLTLEAAATRARLSPAHLSRLETG-----RRQPSLPLLLGLARTYGTTVSEL 62 Query: 71 --QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-VFPTGNKWNTVGVPEIRSPH 127 + + R +E + +G G + + + + Sbjct: 63 LGETPAVADPIVRAGGPGAREADGWTYWQAGGSGRGMQALRVHVPHGRSQGELVRVHPGE 122 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168 +Y ++ + + L GD +S G Sbjct: 123 EWLYVLKGR---LRLHLGEAEHLLEPGDSAHFDSLTPHRIG 160 >gi|167577375|ref|ZP_02370249.1| hipB domain protein [Burkholderia thailandensis TXDOH] Length = 130 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + ++ + + + LT + LAR+ G+ ++ + + G S E +F +L Sbjct: 10 RTLDQLQPILRGLRKSAGLTQAMLARRLGVTQQTYAQFE-----GNPASASVERLFNVLR 64 Query: 64 AT 65 A Sbjct: 65 AL 66 >gi|108761825|ref|YP_633731.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108465705|gb|ABF90890.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 222 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ I I + LT LAR+ GL + ++ +R S S++KI +A Sbjct: 157 HRAIGRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSA-----SISSLYKIASAL 211 Query: 66 NETICQ 71 + + Sbjct: 212 QLRMGE 217 >gi|158320616|ref|YP_001513123.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140815|gb|ABW19127.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 179 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 7/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I R+ + LT LA++ L +K +R PS ++ +L A Sbjct: 2 DIGEKIRRLRLLNELTQDELAQRCDLTKGFISKIERNIT-----SPSIATLMDLLEALGT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL-LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 + + + K++ + S ++ + P S Sbjct: 57 DVKKFFNEDVQSKIIFTKEDIYESVNEDLFHKVSWLIPNAQKNAMEPILIELD-PYGTSN 115 Query: 127 HNGIYAIQTQDTRHKTQ 143 + + K Sbjct: 116 IEEPHKGEEFGYVLKGS 132 >gi|94497703|ref|ZP_01304271.1| transcriptional regulator, Cro/CI family protein [Sphingomonas sp. SKA58] gi|94422920|gb|EAT07953.1| transcriptional regulator, Cro/CI family protein [Sphingomonas sp. SKA58] Length = 69 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + LA + G+ S N + + PS F+I I Sbjct: 3 NRLKLLRAERDWSQGELATRLGISRQSVNAIETGKYD-----PSLPLAFRIADLFALQIE 57 Query: 71 QLLDLPF 77 + Sbjct: 58 DIFLRDE 64 >gi|86739596|ref|YP_479996.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566458|gb|ABD10267.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 116 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 8/108 (7%), Positives = 29/108 (26%), Gaps = 5/108 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + +++ + + + + LA + GL T+ + + + + ++ N Sbjct: 10 LAQSVRKHRRQRGWSQAALAERLGLTRTTITNIEHGA-----QGITLLTFVRLAEQLNVG 64 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 +LL + + + + Sbjct: 65 APELLAEVIAGRPAPSAAPEAPGPYREWVASIASMPGDDNVSAHVADD 112 >gi|83952864|ref|ZP_00961594.1| DNA binding protein, putative [Roseovarius nubinhibens ISM] gi|83835999|gb|EAP75298.1| DNA binding protein, putative [Roseovarius nubinhibens ISM] Length = 284 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 3/60 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R L+ + LAR+ G+D ++ ++ R P+ + + + A + Sbjct: 17 RLAEALRREGLSQTALARRIGVDRSTVSQLL---GSDGARLPNAQVVGECAAVLGVSADW 73 >gi|83942889|ref|ZP_00955349.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83954060|ref|ZP_00962780.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841097|gb|EAP80267.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83845897|gb|EAP83774.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 132 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + E ++T + LA++ G+ ++ + E R ++ +L + Sbjct: 16 GDRVAAARENADMTQAALAKRLGIKQSTLRGWEDDLSE--PRANRLSTLAGVLGVSMMW 72 >gi|189499690|ref|YP_001959160.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides BS1] gi|189495131|gb|ACE03679.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides BS1] Length = 115 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 1/61 (1%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 LT + +AR+ G+ + + + ++ PS ++ + A + + Sbjct: 49 RTEAGLTQAEVARRMGVSQPVLARIESSLGK-QDHSPSLHTLRRYAEACGMELQIRMVKK 107 Query: 77 F 77 Sbjct: 108 E 108 >gi|320108135|ref|YP_004183725.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926656|gb|ADV83731.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 178 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ A+ + NL+ LA + G+ T +K + P+ S+ ++ A Sbjct: 65 QVASAVRDLRLVRNLSQRQLAGRMGVPRTYISKIENGKA-----MPTIGSLERLARALQV 119 Query: 68 TICQ 71 I Sbjct: 120 DISD 123 >gi|307277180|ref|ZP_07558284.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506110|gb|EFM75276.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 71 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 4/40 (10%), Positives = 13/40 (32%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 + R + + + LA+K + + + + Sbjct: 5 SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKP 44 >gi|300854388|ref|YP_003779372.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434503|gb|ADK14270.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 181 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 61/175 (34%), Gaps = 15/175 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ + +++ LA A L ++ +R PS +++KI A N ++ Sbjct: 7 IRKLRQEKSISIEQLAEMAKLSTGLISQVERNIT-----GPSVTTLWKIAKALNVSMNYF 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 D + + ++ + ++ P S S ++ V + + Sbjct: 62 FDEDEYEEKDNVVRKDKRKMIILPNSKITYELLSPNIKGKIEYLLVEIDAGECNTKDLIC 121 Query: 133 IQTQDTRHKTQDT------SMLPLYRKGDILILNSAIQVNC----GDRLLIKPRT 177 + ++ + + T + + +GD + NS + ++++ Sbjct: 122 HEGEECGYIIKGTLKVKLGNKEHILEEGDSIYFNSNVPHRYINAGNEKVISIWAM 176 >gi|295096644|emb|CBK85734.1| Helix-turn-helix [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 75 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 +++ A+ + + +T + LA G + K + Sbjct: 10 QRVINALKKARKEKGITQAQLAEALGKPQSFIAKVESGERR 50 >gi|295093563|emb|CBK82654.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 298 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 16/38 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 KI I +R LT LA K G S +K +R Sbjct: 5 KIGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGI 42 >gi|229171786|ref|ZP_04299358.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] gi|228611683|gb|EEK68933.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] Length = 149 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|225010022|ref|ZP_03700494.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] gi|225005501|gb|EEG43451.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] Length = 70 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H K+ ++++ + +LT L+ KA + S N + PST KI Sbjct: 5 HTKLLNNLEQLRKSCSLTQQELSIKAEVSRKSINAIENGVYV-----PSTLLALKISKTL 59 Query: 66 NETICQ 71 N ++ Sbjct: 60 NCSVED 65 >gi|254419929|ref|ZP_05033653.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186106|gb|EDX81082.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 117 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I E +T + LA AG+ K +R R I +L +T Sbjct: 12 IGARIRARREELRITQAQLAAGAGVTFQQIQKYERGVN--RVSAARLLQIAAVLKSTG 67 >gi|168184227|ref|ZP_02618891.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672749|gb|EDT84710.1| transcriptional regulator [Clostridium botulinum Bf] Length = 136 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I ++ + N+T L + G+ + + R PS E + KI Sbjct: 2 LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNA-----RKPSYEVLIKIAEFF 53 >gi|163815728|ref|ZP_02207100.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC 27759] gi|158449033|gb|EDP26028.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC 27759] Length = 298 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 16/38 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 KI I +R LT LA K G S +K +R Sbjct: 5 KIGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGI 42 >gi|116695076|ref|YP_840652.1| transcriptional regulator [Ralstonia eutropha H16] gi|113529575|emb|CAJ95922.1| transcriptional regulator [Ralstonia eutropha H16] Length = 245 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 19/42 (45%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 + + + + + T + LA +G+ T+ ++++R Sbjct: 22 TLDRETFGKRLRAARKAFGWTLAHLAELSGVSITTISRAERG 63 >gi|82592707|gb|ABB84523.1| DigR [Myxococcus xanthus] Length = 197 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ I I + LT LAR+ GL + ++ +R S S++KI +A Sbjct: 132 HRAIGRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSA-----SISSLYKIASAL 186 Query: 66 NETICQ 71 + + Sbjct: 187 QLRMGE 192 >gi|21228997|ref|NP_634919.1| transcriptional regulator [Methanosarcina mazei Go1] gi|20907540|gb|AAM32591.1| transcriptional regulator [Methanosarcina mazei Go1] Length = 68 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + RH+LT LA G+ + ++ PS + +I + + TI + Sbjct: 4 RIKELRARHDLTQEALANLVGVRRETIVFLEKGKYN-----PSLKLACRIARSLDTTIDE 58 Query: 72 LLDLPFSDGR 81 L +D Sbjct: 59 LFIFEDTDFE 68 >gi|115351079|ref|YP_772918.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281067|gb|ABI86584.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 219 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 5/97 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + T LA ++G+ + + +R P+ + K+ A Sbjct: 15 NERIARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASA-----SPTAVVLDKLAAGL 69 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 ++ L D + + P+ Sbjct: 70 GVSLAGLFGGERDDAPAQPLVRRAQQAEWRDPASGYV 106 >gi|152966423|ref|YP_001362207.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151360940|gb|ABS03943.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 109 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + +T LA G++ + +R PS E ++ Sbjct: 15 NRLAVLRAERGITRRQLAEAVGVNVQTIGFLERGDY-----GPSVELALRLAGHFG 65 >gi|317406552|gb|EFV86747.1| hypothetical protein HMPREF0005_04959 [Achromobacter xylosoxidans C54] Length = 184 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 15/149 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H + + + +L+ L + GL + +K +R E PS ++ + Sbjct: 1 MIDLPH-----RLRALRRQQSLSLEQLGERTGLTKSYLSKLERGLSE-----PSISTVLR 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----TGNKWN 116 + A + QL+ + + G + Sbjct: 51 LAEAYGVGVSQLVGGDGAAQDEVVSLVRVADREALQRRDLGTEYHYESLAGRRKVKAMEP 110 Query: 117 TVGVPEIRSPHNGI-YAIQTQDTRHKTQD 144 + P P + ++ + Sbjct: 111 FIVHPPREFPDAAAVFPHPGEEFLLVLKG 139 >gi|296876651|ref|ZP_06900699.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] gi|296432153|gb|EFH17952.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] Length = 295 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + ++ ++ LA K G+ + K + P E++ I N +I Sbjct: 5 EKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGI-----PDIENMISISNLFNISID 59 Query: 71 QLLDLPF 77 +L+ Sbjct: 60 ELICNER 66 >gi|317127194|ref|YP_004093476.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472142|gb|ADU28745.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 41/117 (35%), Gaps = 10/117 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I+ + NL+ +A + G+ + +K + + PST+++ K+ Sbjct: 3 LGSNINNKRKSLNLSQEYVADQLGVSRQAVSKWENNLSK-----PSTQNLIKMATLFECD 57 Query: 69 ICQ----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGV 120 I + + + + K+ ++ + F G G ++ + Sbjct: 58 IKELVSSDKFMEKQKNLENQTESKKDIRMHMAAAFGRVFMLVGSLGFMGAISDSADL 114 >gi|257440134|ref|ZP_05615889.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] gi|257197486|gb|EEU95770.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] Length = 109 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I E+ T L+ G+ P + +R S E++ ++ Sbjct: 10 EIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGAS-----GISLEALQRLCRLLGI 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 + +++ + I + Sbjct: 65 SADRIIFGTDEPEAEALALARRISDI 90 >gi|255263387|ref|ZP_05342729.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105722|gb|EET48396.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 139 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + E+ L+ LA++ G+ + + E R + + IL + Sbjct: 26 GDRVAAAREQAGLSQEALAKQLGIKNGTLRNWEHDLNE--PRANKLQMLSGILGVSLMW 82 >gi|254295299|ref|YP_003061322.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043830|gb|ACT60625.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 194 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 15/135 (11%), Positives = 40/135 (29%), Gaps = 6/135 (4%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPST 55 SF+ + + + + N + LA +G+ + + ++ + G+ Sbjct: 12 PSFTDADLAQRLKELRAEQNWSLDQLAEISGISRGTLFRLEKGEVSPTAHVLGKLCPAYG 71 Query: 56 ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 ++ +++A L+ + + P + G G Sbjct: 72 LTMSRLMAMVETQFSALIPRGEQKIWYDADYSFKRKSVSPPSTNLSGEVIECELIAGASI 131 Query: 116 NTVGVPEIRSPHNGI 130 + P H+ I Sbjct: 132 SYDKPPRRGLEHHLI 146 >gi|253995592|ref|YP_003047656.1| XRE family transcriptional regulator [Methylotenera mobilis JLW8] gi|253982271|gb|ACT47129.1| transcriptional regulator, XRE family [Methylotenera mobilis JLW8] Length = 114 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 5/97 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++I ++I + LT ++ K G+ + ++ +R P+ + ++ Sbjct: 11 EQIGQSIAKRRLAAGLTQDQVSEKLGIGYEAVSRMERGVTI-----PTVIRLAELAEIFG 65 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 I +LL ++ K + + Sbjct: 66 CGIQELLIESSDRPDDQAEQIKSMLAKLNSEDRNMIL 102 >gi|229070774|ref|ZP_04204003.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185] gi|228712353|gb|EEL64299.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185] Length = 374 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 19/202 (9%), Positives = 55/202 (27%), Gaps = 16/202 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + +T LA G+ S +K + +P + + + N + Sbjct: 6 IHKIIADKRKEKGITQEELATYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I +L+ + K F ++ + Sbjct: 61 IDELISYTPQMKQEDIKNLYHRLAEAFSEKTFDEVMIECRGIIKKYYSCFPL------LL 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187 + + + + + L + D L+ + + ++++ Sbjct: 115 QMGLLFINHHMLTEDTDKKIEILEEAMSLFSRVQEE--SDDVSLVKEAISFQATCYLILN 172 Query: 188 RRGRSIDLMSLN--CCYPVDTV 207 + + L+ +P + + Sbjct: 173 KPNEVLQLLGETIRPNFPEEDL 194 >gi|257125626|ref|YP_003163740.1| XRE family transcriptional regulator [Leptotrichia buccalis C-1013-b] gi|257049565|gb|ACV38749.1| transcriptional regulator, XRE family [Leptotrichia buccalis C-1013-b] Length = 91 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +I I + N+T L+ G+ +K + PS +++ K+ AA Sbjct: 30 QIIREIISARKDKNITQKELSDLTGITQGDISKIENGNAN-----PSLKTLKKLAAAF 82 >gi|227431633|ref|ZP_03913669.1| possible signal peptidase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352625|gb|EEJ42815.1| possible signal peptidase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 207 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--------KPRTGDIVAKVLISRRGR 191 K SM P + + + LN GD ++ D K +I+ G Sbjct: 31 VKVSGPSMEPNLQDNENVFLNKVASYKRGDVIVFNAKDEDPRYQSGDDKYVKRIIAIPGD 90 Query: 192 SIDLMSLN 199 +++ + N Sbjct: 91 TVEYKASN 98 >gi|227553220|ref|ZP_03983269.1| transcriptional regulator [Enterococcus faecalis HH22] gi|307291409|ref|ZP_07571293.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|312904166|ref|ZP_07763334.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|227177586|gb|EEI58558.1| transcriptional regulator [Enterococcus faecalis HH22] gi|306497640|gb|EFM67173.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|310632642|gb|EFQ15925.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|315029956|gb|EFT41888.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4000] Length = 107 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + ++ LT + +A G+ T+++ ++ R P + KI N ++ Sbjct: 3 GTRLTELRKQKKLTQTDVANALGVARTTYSSYEQG-----RRTPDIDIQNKIADYFNVSL 57 Query: 70 CQLLDLPFS 78 L Sbjct: 58 DYLHGRESF 66 >gi|238853357|ref|ZP_04643737.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282852340|ref|ZP_06261682.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311111561|ref|ZP_07712958.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] gi|238834045|gb|EEQ26302.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282556082|gb|EFB61702.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311066715|gb|EFQ47055.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] Length = 64 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 5/56 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + ++ L+ LA++ + + N + PS + K+ Sbjct: 1 MNRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYN-----PSLDLCLKLAHEL 51 >gi|239820608|ref|YP_002947793.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805461|gb|ACS22527.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 81 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + AI + + H ++ LA ++ +D + + +R P ++ +I A + Sbjct: 17 LGTAIKALRKTHGISQEELAHRSHVDRSYMSSIERGMQN-----PGVMTVVQIAAGLGVS 71 Query: 69 ICQ 71 + + Sbjct: 72 VAE 74 >gi|254464799|ref|ZP_05078210.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206685707|gb|EDZ46189.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 178 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 53/213 (24%), Gaps = 42/213 (19%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + LT A+ A + ++ +K + PS E I +++ QL Sbjct: 2 IRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTR-----PSFEIIRRLMQTLELETPQL 56 Query: 73 LDLPFSDGRTTEKKE-KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 G T + + + + + + + R Sbjct: 57 FLQSGQSGVTGRRDFTRTGEGEHKETATYDHELLCSELTSKRMVPYISTIKARDVTEF-- 114 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKVLISRR 189 D + Q + + IL + GD + G Sbjct: 115 -----DNWVRHQGEEFMFVLSGEVILYTEHYRPLRMGPGDSVYYDSGMGHGCV------- 162 Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 +V D A++LW S Sbjct: 163 ----------------SVSAED----AKVLWVS 175 >gi|170754718|ref|YP_001779994.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119930|gb|ACA43766.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 181 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 7/138 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E I + + NLT L+ K GL + ++ + + S+ KI A N Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSS-----SLAITSLKKIADALN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I P +K+E+E + S S SG F + + V Sbjct: 58 VPITYFFKSPELHKFLVKKQERE--VFELEGSSSKFIKLSGNFTERAMESILVVIPAEKQ 115 Query: 127 HNGIYAIQTQDTRHKTQD 144 H ++ ++ + + Sbjct: 116 HGHKFSHPGEEFIYVLEG 133 >gi|153941053|ref|YP_001389709.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936949|gb|ABS42447.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295317797|gb|ADF98174.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 181 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 7/138 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +I E I + + NLT L+ K GL + ++ + + S+ KI A N Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSS-----SLAITSLKKIADALN 57 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I P +K+E+E + S S SG F + + V Sbjct: 58 VPITYFFKSPELHKFLVKKQERE--VFELEGSSSKFIKLSGNFTERAMESILVVIPAEKQ 115 Query: 127 HNGIYAIQTQDTRHKTQD 144 H ++ ++ + + Sbjct: 116 HGHKFSHPGEEFIYVLEG 133 >gi|149921216|ref|ZP_01909673.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817987|gb|EDM77447.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 118 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + T LA+KA L P + + + PS +++ + + N Sbjct: 17 LKSLRKARGYTQEALAKKAKLSPDTIRRLEAGSF-----SPSLDTLKSVASGFN 65 >gi|157959968|ref|YP_001500002.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157844968|gb|ABV85467.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 69 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + T + LA K + + N ++ + PS FK+ Sbjct: 3 NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYD-----PSLPLAFKVARLFEMP 55 >gi|116618311|ref|YP_818682.1| Signal peptidase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097158|gb|ABJ62309.1| type I signal peptidase, Serine peptidase, MEROPS family S26A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 207 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--------KPRTGDIVAKVLISRRGR 191 K SM P + + + LN GD ++ D K +I+ G Sbjct: 31 VKVSGPSMEPNLQDNENVFLNKVASYKRGDVIVFNAKDEDPRYQSGDDKYVKRIIAIPGD 90 Query: 192 SIDLMSLN 199 +++ + N Sbjct: 91 TVEYKASN 98 >gi|152975865|ref|YP_001375382.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024617|gb|ABS22387.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 66 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R ++T LA++ G+ + + ++ PS + I TI ++ Sbjct: 7 IKEARARLHMTQEDLAKRVGVRRETISHLEKGKYN-----PSLQLAHDIAKTLQTTIDEI 61 Query: 73 LDLPF 77 Sbjct: 62 FIFDE 66 >gi|85709950|ref|ZP_01041015.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] gi|85688660|gb|EAQ28664.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] Length = 63 Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 5/38 (13%), Positives = 14/38 (36%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + + + + LA + G+ S N ++ + Sbjct: 3 NRLKVLRAERDWSQQDLADRLGVSRQSVNAIEKGRYDP 40 >gi|332559092|ref|ZP_08413414.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332276804|gb|EGJ22119.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 152 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 5/80 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + L + LAR+AG+ ++N+ R P + + + Sbjct: 25 RIQELTAKAGLPQAELARRAGMSRDAYNRYYRGLTR-----PPVKQLIILAELFGVAPTD 79 Query: 72 LLDLPFSDGRTTEKKEKEIP 91 + + + Sbjct: 80 IDPDRAGLVALEDASHRSYE 99 >gi|325263075|ref|ZP_08129810.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324031468|gb|EGB92748.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 80 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ + N+T + LA +G+ ++ G+ + P +++ K+ T Sbjct: 7 IILRLTQLCDEKNITINKLATLSGITQSTVENIM----SGKTKNPKLKTLHKLALGLGMT 62 Query: 69 ICQLLDLPFSD 79 + +LLD P + Sbjct: 63 VSELLDFPEMN 73 >gi|319936625|ref|ZP_08011038.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] gi|319808182|gb|EFW04747.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] Length = 118 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 16/48 (33%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 I + E+ LT K G+ + ++ ++ + S Sbjct: 1 MSKIKELREQCGLTQEEFGDKIGMSQQTVSRIEKNIDSLDIKTLKIIS 48 >gi|260901786|ref|ZP_05910181.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308108085|gb|EFO45625.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 269 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + A+ + + LT L+ K G+ ++F KR + Sbjct: 1 MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + T + + +L + + + ++ FP Sbjct: 58 AIDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98 >gi|257056813|ref|YP_003134645.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586685|gb|ACU97818.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 475 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E +++ + LAR + P+ N+ + R + + +I A Sbjct: 7 GARLRHLRESRSMSQAELARLLEISPSYLNQIEHNT-----RPLTVPVLLRITEAFG 58 >gi|261820696|ref|YP_003258802.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604709|gb|ACX87195.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 96 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I +AI R ++ + LA KA + + + R P+ ++ KI A Sbjct: 2 NIGQAIKLCRTRRGISQTDLANKAECSVSYLSMLENN-----KRDPTLSTLTKIATAL 54 >gi|238927790|ref|ZP_04659550.1| hypothetical protein HMPREF0908_1690 [Selenomonas flueggei ATCC 43531] gi|238884337|gb|EEQ47975.1| hypothetical protein HMPREF0908_1690 [Selenomonas flueggei ATCC 43531] Length = 106 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 3/97 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I I L LA K G+ + ++ +R + S + I Sbjct: 10 KQIGAKIAYYRTLRGLHQVVLAEKIGISSSVLSRIERGKYN---KNISISMLLDIAEGLG 66 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + + + ++ + G Sbjct: 67 VDVSMFVTFDEHEKAMWGDPYQQEYSRAHRQNKFQGE 103 >gi|238027641|ref|YP_002911872.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237876835|gb|ACR29168.1| Transcriptional regulator, XRE family protein [Burkholderia glumae BGR1] Length = 78 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 7/79 (8%), Positives = 27/79 (34%), Gaps = 5/79 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + + +L+ + +A + G+ ++ ++ +R + P E+ +++ Sbjct: 1 MNNIRHLRKSLSLSQAEMAEQIGVTQSALSQYERQLCD-----PVIETARRMIVYAGSLG 55 Query: 70 CQLLDLPFSDGRTTEKKEK 88 + + Sbjct: 56 ATWTLDQIYSDPPLAEPAQ 74 >gi|254519524|ref|ZP_05131580.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226913273|gb|EEH98474.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 349 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATN 66 KI E I LT +A G+ + NK ++ P+ + ++ T Sbjct: 2 KINEIIKERRIDQGLTQEQVAEALGVSTPAVNKWEKGISYPDITILPALARLLRVDLNTL 61 Query: 67 ETICQLLDLPFSDG 80 + + + Sbjct: 62 LSFKEDVTDIEIGH 75 >gi|226324586|ref|ZP_03800104.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] gi|225207034|gb|EEG89388.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] Length = 179 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + NLT LA ++ L ++ +R PS ++ IL Sbjct: 2 NIGQKVRELRIAKNLTQEELADRSELSKGFISQLERDLT-----SPSIATLVDILQCLGT 56 Query: 68 TICQLLDLPF 77 + + Sbjct: 57 NLNEFFSDDE 66 >gi|218709441|ref|YP_002417062.1| hypothetical protein VS_1450 [Vibrio splendidus LGP32] gi|218322460|emb|CAV18613.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 142 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + NL+ +AR G+ ++ K + E P I K+ T Sbjct: 21 IGSVLKEARALKNLSQPEVARLVGVTKQTYLKWENDTTE-----PKATQISKLAKVLGIT 75 Query: 69 ICQLLD 74 ++ + Sbjct: 76 SDEICN 81 >gi|254472908|ref|ZP_05086307.1| transcriptional regulator, XRE family [Pseudovibrio sp. JE062] gi|211958372|gb|EEA93573.1| transcriptional regulator, XRE family [Pseudovibrio sp. JE062] Length = 283 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++T S LAR AG+D ++ + I R P+++ + + A+ + Sbjct: 16 NRLTEAMAQADVTRSQLARNAGVDRSTIGQLLNNEI---PRLPNSQLLADLAASLGVSAD 72 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 LL L R + + + S + Sbjct: 73 WLLGLTNRPERPGDIIAAAMAMSPAERSSVDEQILNWH 110 >gi|170746831|ref|YP_001753091.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653353|gb|ACB22408.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 359 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 22/61 (36%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I L+ LA +A + ++ N+ + R RW + ++ + L Sbjct: 286 IPSQIRSARAITGLSKDELAARANVSVSTLNRLEDPTSAVRPRWDTLLAVRRALEEAGVE 345 Query: 69 I 69 Sbjct: 346 F 346 >gi|196032247|ref|ZP_03099661.1| DNA-binding protein [Bacillus cereus W] gi|228915928|ref|ZP_04079503.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|195994998|gb|EDX58952.1| DNA-binding protein [Bacillus cereus W] gi|228843746|gb|EEM88820.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 374 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + K F Sbjct: 56 YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99 >gi|153940476|ref|YP_001390199.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936372|gb|ABS41870.1| DNA-binding protein [Clostridium botulinum F str. Langeland] Length = 373 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 43/157 (27%), Gaps = 12/157 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + I + +T LA G+ S +K + +P + ++ N Sbjct: 5 NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLS-----YPDILFLPELATYFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ +LL + KK F + ++ Sbjct: 60 SVDELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKYYSCFPFLLSIIQL 119 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164 Y+ ++ ++ + IL+ + Sbjct: 120 LLNYSN-------LIKNDAIKKEIFQQCILLSRRIKE 149 >gi|148274004|ref|YP_001223565.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831934|emb|CAN02905.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 68 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + L+ LA G+ + N + + PS K + ++ ++ Sbjct: 8 VRGLRTAAGLSQQSLADALGVSRQTINAIETGRYD-----PSLALAVKAARFFHRSVEEV 62 Query: 73 LDLPF 77 + Sbjct: 63 FHVED 67 >gi|55377330|ref|YP_135180.1| transcription regulator [Haloarcula marismortui ATCC 43049] gi|55230055|gb|AAV45474.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length = 180 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 38/153 (24%), Gaps = 16/153 (10%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + LT S LA +A + + + G + P ++ +I+ A E + Sbjct: 9 LRERRNELGLTQSELAERADVSQPLIARIE-----GGDVDPRLSTLRRIVTALEEAEGGI 63 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 + + + ++ V V +P I Sbjct: 64 IKARDLMNSPV-----------VGVAPDDSVHQTKDLMDEKGYSQVPVIRDGAPQGLIGN 112 Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165 + + + I + + Sbjct: 113 SDIRQRPEENVGDLPVAEVMNESIATVEPDAPI 145 >gi|85544221|pdb|2B5A|A Chain A, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544222|pdb|2B5A|B Chain B, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544223|pdb|2B5A|C Chain C, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544224|pdb|2B5A|D Chain D, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|311977251|gb|ADQ20505.1| C.BclI [Bacillus caldolyticus] Length = 77 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ + ++ LA AGL T ++ +R +R S +I KI AA + Sbjct: 12 GRTLKKIRTQKGVSQEELADLAGLHRTYISEVERG-----DRNISLINIHKICAALDIPA 66 Query: 70 CQLLDLPF 77 Sbjct: 67 STFFRKME 74 >gi|28898058|ref|NP_797663.1| hypothetical protein VP1284 [Vibrio parahaemolyticus RIMD 2210633] gi|153839394|ref|ZP_01992061.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|260366360|ref|ZP_05778799.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260878408|ref|ZP_05890763.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|260896987|ref|ZP_05905483.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|28806272|dbj|BAC59547.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747089|gb|EDM58077.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|308087743|gb|EFO37438.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|308091250|gb|EFO40945.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|308113163|gb|EFO50703.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|328472984|gb|EGF43832.1| hypothetical protein VP10329_19920 [Vibrio parahaemolyticus 10329] Length = 269 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + A+ + + LT L+ K G+ ++F KR + Sbjct: 1 MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + T + + +L + + + ++ FP Sbjct: 58 AIDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98 >gi|121582747|ref|YP_973189.1| XRE family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120596009|gb|ABM39447.1| transcriptional regulator, XRE family [Polaromonas naphthalenivorans CJ2] Length = 98 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 A+ + + LA AG++ + K +R P+ I KI A + Sbjct: 26 GAAVRALRTEQGVAQETLAHLAGIERSHMGKIERGE-----HMPTLAIILKIARALGCSS 80 Query: 70 CQLLDLPFSDGRTTEKK 86 L+ S +E + Sbjct: 81 ADLMTATESRLTASEPE 97 >gi|186687142|ref|YP_001870285.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469445|gb|ACC85244.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 116 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 4/90 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E L+ + LARK G + K ++ GR + +++ + + Sbjct: 7 LKKTREAKGLSQNELARKTGYSLQNIQKIEQ----GRAASITFDALGRFCEVLECQPGDI 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 L+ ++ +L G Sbjct: 63 LEWRPNNIDDKTGHSSNDEVLKTASEEVEG 92 >gi|330891950|gb|EGH24611.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 109 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + L S +A +P + ++ +R P+ E + ++ + Sbjct: 5 VAARLKLLRTGKGLKQSEVAELIDCEPNTISRYERAET-----MPNIEDLLRLADLFGVS 59 Query: 69 ICQLLDLPFSDGRTTE 84 ++L S + Sbjct: 60 PMEILPPQDSITQRIH 75 >gi|326692328|ref|ZP_08229333.1| hypothetical protein LargK3_00985 [Leuconostoc argentinum KCTC 3773] Length = 241 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 14/155 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + + LT LA + + + +R + P+ + + IL Sbjct: 3 IGHQIKLLRQSKGLTQRDLADTLYISYQAVSNWERHQSQ-----PTADMLLAILEK---- 53 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 D + + +EKE L F S + T ++ + + H Sbjct: 54 YHLPHDFFITQSKQQCTQEKEQILRGFLESLMYCASKPPSYATIAQFANLSI-AQICQHF 112 Query: 129 GIYAIQTQDTRHKTQDTS----MLPLYRKGDILIL 159 Y D + L D++ + Sbjct: 113 PNYEALVNQFMVTVDDQIKPTVEMHLIAHEDLITI 147 >gi|315645386|ref|ZP_07898510.1| XRE family transcriptional regulator [Paenibacillus vortex V453] gi|315278864|gb|EFU42174.1| XRE family transcriptional regulator [Paenibacillus vortex V453] Length = 106 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + AI + + NLT LA K G + + +R + +++ KI A N Sbjct: 9 LGIAIREIRKNQNLTQEELAEKIGSSFSYIGRLERGEGN-----FTVQTLEKITTALNID 63 Query: 69 ICQLL 73 + Sbjct: 64 FFDFM 68 >gi|315174233|gb|EFU18250.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 394 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFDQLESFNPD 64 >gi|314940599|ref|ZP_07847731.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313640219|gb|EFS04800.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 394 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFDQLESFNPD 64 >gi|270261649|ref|ZP_06189922.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] gi|270045133|gb|EFA18224.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] Length = 187 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + + + + A G+ + +R P+ +++K Sbjct: 1 MQELSG-HLAQTLKSLRAQRGWSLAQAAENTGVSKAMLGQIERGES-----SPTVATLWK 54 Query: 61 ILAATN 66 I N Sbjct: 55 IATGFN 60 >gi|153810580|ref|ZP_01963248.1| hypothetical protein RUMOBE_00961 [Ruminococcus obeum ATCC 29174] gi|149833759|gb|EDM88840.1| hypothetical protein RUMOBE_00961 [Ruminococcus obeum ATCC 29174] Length = 139 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 6/123 (4%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 +++ +++ +T +A++AG+ T+ + K P+T+++ KI TI L+ Sbjct: 6 EQLLQKNGVTSYKVAKEAGVTQTALSNWKSGRST-----PTTKTLQKIADYFGVTIDYLM 60 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRSPHNGIYA 132 + + S P N A Sbjct: 61 TGKDISAPQELTAKDNRDIAKDLDSIMEKLTSGEDGPASYNGEELSPEAAELFRDELEIA 120 Query: 133 IQT 135 ++ Sbjct: 121 LKR 123 >gi|149189925|ref|ZP_01868204.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] gi|148836240|gb|EDL53198.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] Length = 179 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 10/104 (9%), Positives = 32/104 (30%), Gaps = 5/104 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + ++ + L+ A+ G+ + +R P+ +++KI + Sbjct: 9 QIAAHLKQIRKHKGLSLDATAKLTGVSKAMLGQIERGES-----SPTISTLWKISSGLEA 63 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + ++ +L + +F Sbjct: 64 SFSGFFANDPVLRDSEMTFPEDENMLVNTLFPYTSDTNMEMFEI 107 >gi|189424698|ref|YP_001951875.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189420957|gb|ACD95355.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 68 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + E+ ++ S LARKAG+ + ++ +R E++ KI+ A T+ Sbjct: 5 NNVKILREKKLMSKSELARKAGVSTVTIDRIERGESC------RLETMRKIILALGYTLE 58 Query: 71 QLLDLPFSD 79 + Sbjct: 59 DRDKVFQEQ 67 >gi|260906742|ref|ZP_05915064.1| transcriptional regulator, XRE family protein [Brevibacterium linens BL2] Length = 69 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + LT + LA++ G+ + ++R PS +I + T+ Sbjct: 6 SNLKHVRKAAGLTQAQLAQRTGVSRQTIIATERGDY-----APSVYLALRIARSLETTVE 60 Query: 71 QLLDLPF 77 ++ L Sbjct: 61 EIFSLQE 67 >gi|56696323|ref|YP_166680.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678060|gb|AAV94726.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 283 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 4/113 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + R E T S LAR G+D ++ ++ + R P+ + +A Sbjct: 9 QFRQRLARAMELRQATQSALARAVGVDRSTISQLL---TDSGARLPNGHVVGACASALGV 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119 + LL L E + + P + G K V Sbjct: 66 SADWLLGLSDRPESAAELLALSMTMTEAPRALVDERIYDWHREAAGYKIRYVP 118 >gi|16801484|ref|NP_471752.1| hypothetical protein lin2422 [Listeria innocua Clip11262] gi|16414944|emb|CAC97649.1| lin2422 [Listeria innocua Clip11262] Length = 160 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 5/125 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I + E+ N++ LA + G++ + N+ + R + I + Sbjct: 2 KVNEMIINLREKRNISQRELANRIGINKSVMNRIESGE-----RDIRAHELEAIANYFDV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + LL + P + + + +I + Sbjct: 57 SADYLLGRSKQNDIADTIAAHIDPNATEEEMEEILAYIEEKRKEYANEEEIDITDIAAKK 116 Query: 128 NGIYA 132 + A Sbjct: 117 DADVA 121 >gi|332202990|gb|EGJ17058.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 164 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 18/41 (43%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 I ++ + +NLT LA + + + + + + ++ Sbjct: 1 MNRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKS 41 >gi|325698118|gb|EGD39999.1| transcriptional regulator [Streptococcus sanguinis SK160] gi|332358835|gb|EGJ36657.1| transcriptional regulator [Streptococcus sanguinis SK1056] Length = 74 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MARESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|301794241|emb|CBW36661.1| Phage transcriptional regulator [Streptococcus pneumoniae INV104] Length = 167 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 18/41 (43%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 I ++ + +NLT LA + + + + + + ++ Sbjct: 4 MNRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKS 44 >gi|254708272|ref|ZP_05170100.1| hypothetical protein BpinM_15273 [Brucella pinnipedialis M163/99/10] Length = 42 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 4 FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43 S +KI+ I R+ LT + +A G+ P+ N +R Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIER 42 >gi|229189224|ref|ZP_04316248.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] gi|228594268|gb|EEK52063.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] Length = 149 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRGDEELTQKVIEDSKQLAYPKW 84 >gi|154503561|ref|ZP_02040621.1| hypothetical protein RUMGNA_01385 [Ruminococcus gnavus ATCC 29149] gi|153795661|gb|EDN78081.1| hypothetical protein RUMGNA_01385 [Ruminococcus gnavus ATCC 29149] Length = 118 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 8/71 (11%) Query: 1 MTSFS---HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M KK+ + ER L+ S LA +AG+ + + + P + Sbjct: 1 MRMLMDTVKKKLGYMVRSERERRGLSQSRLAEQAGVSTRTISDIETCNGN-----PELAT 55 Query: 58 IFKILAATNET 68 + I N + Sbjct: 56 LIPIAQFLNIS 66 >gi|148360195|ref|YP_001251402.1| IS652 transposase [Legionella pneumophila str. Corby] gi|148281968|gb|ABQ56056.1| transposase (IS652) [Legionella pneumophila str. Corby] Length = 391 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 19/185 (10%), Positives = 56/185 (30%), Gaps = 7/185 (3%) Query: 11 EAIDRMAER------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 A + + ++ ++ LAR L ++ + +G E R + +T S ++L Sbjct: 94 RASESLRKQVFHYHSKGVSQKDLARDLKLGKSAVERWYHYGYELRYKKIATRSCPRVLGL 153 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124 + + + + + K + G+ ++ + + + Sbjct: 154 DEHSFNRKVGYATTFCDLAKHKI-FDVVEGRSEKDLEGYLNTLEGKDKVQVVCIDLSSSY 212 Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y + +L + ++ ++ G ++ ++ K Sbjct: 213 RKLIRRYFPNAMIVAVRFHVIRLLNQFCLQTYQQIDPEMKYQRGLLAALRTNPNNLSVKR 272 Query: 185 LISRR 189 L R Sbjct: 273 LNKRE 277 >gi|114775570|ref|ZP_01451138.1| hypothetical protein SPV1_04558 [Mariprofundus ferrooxydans PV-1] gi|114553681|gb|EAU56062.1| hypothetical protein SPV1_04558 [Mariprofundus ferrooxydans PV-1] Length = 180 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 5/137 (3%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I I + E+ L+ LA AG+ + ++ + PS ++ K+ Sbjct: 2 QNIGGTIRSLREQQGLSQRALAEAAGISAAALSQLEAGQT-----SPSVATLEKLADGLG 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 I + E P + G + P G + V + Sbjct: 57 IAIAAFFLDSGNPADIEIFDLNERPSVPLGQGGRFVPLTAMHQPAGFEPMLVQLDPGGCF 116 Query: 127 HNGIYAIQTQDTRHKTQ 143 Y I++ + Sbjct: 117 DENKYGIKSPHAFVWMR 133 >gi|91790971|ref|YP_551922.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91700851|gb|ABE47024.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 107 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E I + LT LA +AGL + + + + PS E + I Sbjct: 4 KLGEKIRSYRTKKGLTLEALAHQAGLSKSYLWELENRESQ----RPSAEKLQGIADVLGV 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIP 91 + +D + + + ++ Sbjct: 60 DVSFFVDDSVDNPQEAHRDKQFFR 83 >gi|85707104|ref|ZP_01038192.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668390|gb|EAQ23263.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 207 Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + T A++AGL ++ +K + + P+ +++ K+ Sbjct: 26 DLGVRVRGLRKARGWTLEQAAKQAGLARSTLSKIENGQM-----SPTYDALKKLAQGLEI 80 Query: 68 TICQLLDLPFS 78 ++ QL P Sbjct: 81 SVPQLFTPPSR 91 >gi|323486027|ref|ZP_08091358.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum WAL-14163] gi|323400594|gb|EGA92961.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum WAL-14163] Length = 143 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 12 AIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + +++ +T L GL + +S + + E PS E++ K+ T+ Sbjct: 76 NLAYLRKKYGMTQQELVEIIGLKNKSSISLIENGKYE-----PSIENLEKLADFFGVTMD 130 Query: 71 Q 71 Q Sbjct: 131 Q 131 Score = 40.5 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E + + E++ T LA G++ + + + +R P +I + + Sbjct: 3 LAENLKFLREQNGKTQGELAVLFGIEQKTISSWECG-----SRKPPIGTIVSLAKLYRVS 57 Query: 69 ICQLLDLPFSDGRTTEK 85 + L+ Sbjct: 58 LDDLVLTDMRPPIPVYA 74 >gi|300917853|ref|ZP_07134492.1| helix-turn-helix protein [Escherichia coli MS 115-1] gi|300414950|gb|EFJ98260.1| helix-turn-helix protein [Escherichia coli MS 115-1] Length = 185 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + L+ A + G + ++ +R G S ++I Sbjct: 32 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 86 Query: 61 ILAATNETICQ 71 + A + Q Sbjct: 87 LANALSVEPWQ 97 >gi|323529073|ref|YP_004231225.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323386075|gb|ADX58165.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 212 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ +T L+R AG+ + ++ +R P+ +++ A Sbjct: 34 RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ L + +IP L + + G + + Sbjct: 89 SLDSLFAPQKTPEAIAVAGPHDIPTLSGHDAKYLLRVWGPIELAGK-FEWYEL 140 >gi|256025208|ref|ZP_05439073.1| hypothetical protein E4_17688 [Escherichia sp. 4_1_40B] gi|301325184|ref|ZP_07218708.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|300847945|gb|EFK75705.1| helix-turn-helix protein [Escherichia coli MS 78-1] Length = 185 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + L+ A + G + ++ +R G S ++I Sbjct: 32 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 86 Query: 61 ILAATNETICQ 71 + A + Q Sbjct: 87 LANALSVEPWQ 97 >gi|229068689|ref|ZP_04201987.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] gi|228714436|gb|EEL66313.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] Length = 149 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|229176551|ref|ZP_04303977.1| Transcriptional regulator [Bacillus cereus MM3] gi|228606907|gb|EEK64303.1| Transcriptional regulator [Bacillus cereus MM3] Length = 115 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ + +LT L+ + GL + P ES+ + + N + Sbjct: 5 VGQNIKRLRKSFDLTQEQLSDRTGLSRGQIKNWETD-----RHEPDLESLKVLASFFNTS 59 >gi|220920176|ref|YP_002495477.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944782|gb|ACL55174.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 193 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 40/136 (29%), Gaps = 6/136 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + LT LA++ G+ + + +R P+ + ++ A Sbjct: 11 RLAARLRGLRTAQGLTLEALAQRCGVSRSMISLVERAES-----SPTATVLERLSAGLGV 65 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP-PSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 ++ L + + + + P F + + V +P + Sbjct: 66 SLAALFSPEHREDASPLSRRADQRCWRDPGTGYRRRNLSPPGFSSPLELVEVELPPGSTV 125 Query: 127 HNGIYAIQTQDTRHKT 142 + + + Sbjct: 126 AYDSIRVPPLEQQVWV 141 >gi|254418301|ref|ZP_05032025.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3] gi|196184478|gb|EDX79454.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3] Length = 67 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + + + LA G+ + N + + P I +I E+I Sbjct: 3 NRLKVLRAERDWSQAHLAELLGVSRQTVNALETGRYD--PSLPLAFKIARIFDQPIESIF 60 >gi|154499014|ref|ZP_02037392.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|261366721|ref|ZP_05979604.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332655640|ref|ZP_08421260.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|150271854|gb|EDM99080.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|282571548|gb|EFB77083.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332515537|gb|EGJ45171.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 109 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 5/86 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I E+ T L+ G+ P + +R S E++ ++ Sbjct: 10 EIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGAS-----GISLEALQRLCRLLGV 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93 + +++ + I + Sbjct: 65 SADRIIFGTDEPEAEALALARRISDI 90 >gi|16767308|ref|NP_462923.1| hypothetical protein STM4042A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415888|ref|YP_152963.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364817|ref|YP_002144454.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207859233|ref|YP_002245884.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16422606|gb|AAL22882.1| hypothetical protein STM4042A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130145|gb|AAV79651.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096294|emb|CAR61895.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|206711036|emb|CAR35406.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249159|emb|CBG27020.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996333|gb|ACY91218.1| hypothetical protein STM14_4861 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160550|emb|CBW20080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332990871|gb|AEF09854.1| hypothetical protein STMUK_4027 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 188 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I ++ R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A Sbjct: 14 IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVAL 65 >gi|37676450|ref|NP_936846.1| hypothetical protein VVA0790 [Vibrio vulnificus YJ016] gi|37676458|ref|NP_936854.1| hypothetical protein VVA0798 [Vibrio vulnificus YJ016] gi|37200992|dbj|BAC96816.1| hypothetical protein [Vibrio vulnificus YJ016] gi|37201000|dbj|BAC96824.1| hypothetical protein [Vibrio vulnificus YJ016] Length = 170 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + M ER L S +A G+ ++ K + E P I K+ + + Sbjct: 5 LQDVLKEMRERKGLKQSEVADYVGVTAQTYMKWENGKNE-----PKASDIKKLAEILSVS 59 Query: 69 ICQLLD 74 ++ Sbjct: 60 ESEICR 65 >gi|152974402|ref|YP_001373919.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023154|gb|ABS20924.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 72 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I+ + + R N T S LA K G+ + ++ Sbjct: 3 IYNRVKELRARFNFTQSTLAEKVGVTRQTIAAIEKG 38 >gi|330465773|ref|YP_004403516.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328808744|gb|AEB42916.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] Length = 147 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 3/92 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+D + + ++R+ G+ + N+ R P E + Sbjct: 16 VRRALDEARATRAWSGTEVSRRTGVSRQTINRWVRG---DWASDPEAERVVAFCEGLGLD 72 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 D + + P P + Sbjct: 73 PTPAFAALGWDRTSARHRSTSTPPPMDPDVEA 104 >gi|324992011|gb|EGC23933.1| helix-turn-helix domain protein [Streptococcus sanguinis SK405] Length = 361 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 57/176 (32%), Gaps = 17/176 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ + E +N+T A + G+ + +K S E+ K+ + ++ Sbjct: 17 GQYVEELIEDYNVTQKEFAERLGVSAKTVSKLVNAEE-----SISKETAHKLAKLSGVSM 71 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 L+L + + ++ L D F + VP+ R Sbjct: 72 QTWLNLQNAYDVKVAEIAEQRDLEEGSEKKICEMIDFKYFK-----DEGYVPDKR----- 121 Query: 130 IYAIQTQDTRHK-TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 Y+++ + + + L + L+ + ++ ++ +K Sbjct: 122 -YSLKEKIIELRKILGVANLKNLTTFNHLVSYRNTREFTTKSIVNSNIMLELASKK 176 >gi|313674149|ref|YP_004052145.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312940847|gb|ADR20037.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 214 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 E I ++ LT S LA + + + E P E+I K Sbjct: 5 GENIKKIRSVRGLTQSQLADIIDVSRGVISSYEEGRAE-----PKIETIIKTAEVFQ 56 >gi|312962889|ref|ZP_07777376.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|311282916|gb|EFQ61510.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 81 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 5/33 (15%), Positives = 15/33 (45%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 I + + L+ + LA++ G+ + + + Sbjct: 8 IKNLRKAAGLSQAQLAQRHGMSRATISGIENNT 40 >gi|302561872|ref|ZP_07314214.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302479490|gb|EFL42583.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 200 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 19/149 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS ++ KI A Sbjct: 19 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTN-----PSIGTVVKIGDALG 73 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKW 115 ++ LLD ++ + L + + G Sbjct: 74 VSVTTLLDYERGPKVRIVPADQAVRLWHTAEGSYNRLLAGAEAPGPLEMWDWKLMPGESS 133 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 ++ P + A + Sbjct: 134 DSDPHPAGTVELLHVTAGE---LTLTVDG 159 >gi|269966326|ref|ZP_06180413.1| hypothetical protein VMC_18430 [Vibrio alginolyticus 40B] gi|269829065|gb|EEZ83312.1| hypothetical protein VMC_18430 [Vibrio alginolyticus 40B] Length = 269 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + A+ + + LT L+ K G+ ++F KR + Sbjct: 1 MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + T + + +L + + + ++ FP Sbjct: 58 AVDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98 >gi|229151508|ref|ZP_04279711.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550] gi|228632051|gb|EEK88677.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550] Length = 374 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + K F Sbjct: 56 YFNISIDELISYTPQMEQEDIKDLYHRLAEAFSEEPFDEVMIEC 99 >gi|156936786|ref|YP_001436137.1| DNA polymerase V subunit [Vibrio harveyi ATCC BAA-1116] gi|156530033|gb|ABU75117.1| hypothetical protein VIBHAR_p08270 [Vibrio harveyi ATCC BAA-1116] Length = 135 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 11/123 (8%) Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156 + P + + + SM + GDI Sbjct: 1 MNVIPISARAGITGFESPAAEYRQLSLDLDELLIEHPSATFLGRASGDSMQGVGIFDGDI 60 Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216 LI++ + +N D ++ G+ V K++ + L+S + + V+ DI + Sbjct: 61 LIVDRHVTLNNMDVIV-ANLNGEFVCKLIDIK---HRQLLSAHPNHVPVLVQDCDIFTVE 116 Query: 217 RIL 219 ++ Sbjct: 117 GVV 119 >gi|94967298|ref|YP_589346.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549348|gb|ABF39272.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 118 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 5/88 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I + ++ + ++ GL ++ + PS +++ KI +A + Sbjct: 2 NIGETIRNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTI-----PSLDTLAKIASAMDV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + +D T + +L F Sbjct: 57 ALATFFSDAPADNGTKSSPQVSDEVLRF 84 >gi|91223964|ref|ZP_01259228.1| hypothetical protein V12G01_19507 [Vibrio alginolyticus 12G01] gi|91191456|gb|EAS77721.1| hypothetical protein V12G01_19507 [Vibrio alginolyticus 12G01] Length = 269 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + A+ + + LT L+ K G+ ++F KR + Sbjct: 1 MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + T + + +L + + + ++ FP Sbjct: 58 AVDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98 >gi|254228393|ref|ZP_04921820.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262394482|ref|YP_003286336.1| hypothetical protein VEA_003711 [Vibrio sp. Ex25] gi|151939199|gb|EDN58030.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262338076|gb|ACY51871.1| hypothetical protein VEA_003711 [Vibrio sp. Ex25] Length = 269 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + A+ + + LT L+ K G+ ++F KR + Sbjct: 1 MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + T + + +L + + + ++ FP Sbjct: 58 AVDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98 >gi|95930238|ref|ZP_01312976.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95133701|gb|EAT15362.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 191 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 47/155 (30%), Gaps = 7/155 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + I + + +M +++T GLA K+ + ++ +R PS E + K+ A Sbjct: 4 ELIGKKLKKMRLNNDMTIEGLANKSQVSSNMISRIERGLTT-----PSVEILMKLAGAFG 58 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVGVPEIRS 125 +I ++ ++F + G + E + Sbjct: 59 MSISYFVEEAEKGSTVVHTPNGSGEPIFFFEDKHQIVSLTQGLRDPGFTVFYDTLEEGCN 118 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160 G ++ + + L+ + Sbjct: 119 SGEGDMVHVGEEFAMVLKGQMEF-IIEGKSYLLSD 152 >gi|325687047|gb|EGD29070.1| DNA-binding protein [Streptococcus sanguinis SK72] Length = 197 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + I + NL+ LA + S + +R + + K+ Sbjct: 2 QVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGAT--YPDVQNLLLLSKVFE 55 >gi|291541151|emb|CBL14262.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 179 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 17/176 (9%), Positives = 46/176 (26%), Gaps = 23/176 (13%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + + H+L+ G+ + + + + PS +++ +I + +I Sbjct: 18 NLKELRQEHSLSQKDFGASIGISAMAISSYESGT-----KSPSIDTVCRIAETYHVSIDW 72 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 L + E K + + + + Sbjct: 73 LCGTGDIKNHSLEIKTYTDLIEILMLLD---------------EIHIDIEKAERSFGSTL 117 Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187 + D +++ Y + + GD+L + V K Sbjct: 118 GLSPYYLSLTFNDKTLVDFYDEWKEISSIRYKTP-TGDKLYNIWL--EDVHKRYNY 170 >gi|254559382|ref|YP_003066477.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266660|emb|CAX22437.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 158 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 2/95 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + LT + L + G+ K + S I ++L + Sbjct: 42 VGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLS--DIARVLEVRVSS 99 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + D + + + S Sbjct: 100 FYDGDEGEGEDRAEVFGFLRTHGAIDLLRAFSEIE 134 >gi|242237765|ref|YP_002985946.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242129822|gb|ACS84124.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 144 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 ++ + I + + LT LA+ + + + Sbjct: 28 ELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRR 67 >gi|221200835|ref|ZP_03573876.1| putative transposase [Burkholderia multivorans CGD2M] gi|221207031|ref|ZP_03580042.1| putative transposase [Burkholderia multivorans CGD2] gi|221213047|ref|ZP_03586023.1| putative transposase [Burkholderia multivorans CGD1] gi|221213695|ref|ZP_03586669.1| putative transposase [Burkholderia multivorans CGD1] gi|221166484|gb|EED98956.1| putative transposase [Burkholderia multivorans CGD1] gi|221167260|gb|EED99730.1| putative transposase [Burkholderia multivorans CGD1] gi|221173105|gb|EEE05541.1| putative transposase [Burkholderia multivorans CGD2] gi|221179407|gb|EEE11813.1| putative transposase [Burkholderia multivorans CGD2M] Length = 344 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%) Query: 2 TSFSHKKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + ++ E I +A + H + +AR+ G+ + + R + P K Sbjct: 4 KMLTQEQSLE-IRVLARQGHGI--KAIARELGVSRNTVRRYLRGEATPPSYGPRAARPRK 60 Query: 61 ILAATNETICQLLDLPFSDGRTT 83 + T ++ T Sbjct: 61 LDPYTQYLRDRIEAAHPHWIPAT 83 >gi|295838058|ref|ZP_06824991.1| DNA-binding protein [Streptomyces sp. SPB74] gi|197699989|gb|EDY46922.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 400 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 I R+ + +LT LA AGL ++ K+++ I Sbjct: 16 GTRIKRLRQERHLTQKALADLAGLSYSTVTKTEKALIPLTPH 57 >gi|218437353|ref|YP_002375682.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] gi|218170081|gb|ACK68814.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] Length = 377 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 14/198 (7%), Positives = 40/198 (20%), Gaps = 24/198 (12%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 +++ I ++ R L+ LA+ AG+ + + + PS ++ Sbjct: 1 MKQDRELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQY-----APSATVALRLA 55 Query: 63 AATNETICQ-LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----------- 110 A + F + + +P Sbjct: 56 KALGCRVEDLFWLDNDETMIEAFPTSTVPIAQPFRLTLAQVGSKLIAYPLIKDDAFRTEI 115 Query: 111 -TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 + + + + + P+ + + Sbjct: 116 IAADGEGWRDTEDSTIKVKLWREPEVLNHTVVIAGCT--PVLSLWANVAQRWYPDLR--- 170 Query: 170 RLLIKPRTGDIVAKVLIS 187 + L Sbjct: 171 -VYWSFANSMDALHRLAR 187 >gi|182419511|ref|ZP_02950762.1| conserved domain protein [Clostridium butyricum 5521] gi|237666225|ref|ZP_04526212.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376641|gb|EDT74214.1| conserved domain protein [Clostridium butyricum 5521] gi|237658315|gb|EEP55868.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 73 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 16/40 (40%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 AI + ++T LA + G+ + N ++ + Sbjct: 6 AIKVARAQLDMTQKELAERVGVSRQTMNAIEKGEYNPTIK 45 >gi|206974503|ref|ZP_03235419.1| DNA-binding protein [Bacillus cereus H3081.97] gi|206747146|gb|EDZ58537.1| DNA-binding protein [Bacillus cereus H3081.97] Length = 374 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + K F Sbjct: 56 YFNISIDELISYKPQMEQEDIKDLYHRLAEAFSEEPFDEVMMEC 99 >gi|183221596|ref|YP_001839592.1| putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911676|ref|YP_001963231.1| hypothetical protein LBF_2156 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776352|gb|ABZ94653.1| Hypothetical protein LBF_2156 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780018|gb|ABZ98316.1| Putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 93 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 16/34 (47%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + + E+ L+ S LA+KA + +K + Sbjct: 34 LQSLREKKGLSQSDLAKKAHVTQQQLSKIENGIN 67 >gi|120435259|ref|YP_860945.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577409|emb|CAL65878.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 95 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I A+ + + +T LA + + ++ + +P ++I KI A Sbjct: 2 EIGSAVKILRKSRGMTQKELADLCDISVNALSQIEINSS-----FPQKQTIHKICKALEY 56 Query: 68 T 68 Sbjct: 57 P 57 >gi|145593424|ref|YP_001157721.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145302761|gb|ABP53343.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 147 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 3/92 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + A+D + + ++R+ G+ + N+ R P E + Sbjct: 16 VRRALDEARATRAWSGTEVSRRTGVSRQTINRWVRG---DWASDPEAERVVAFCEGLGLD 72 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 D + + P P + Sbjct: 73 RATAFTALGWDRQNAAHRAGATPPPMDPDVQA 104 >gi|20808446|ref|NP_623617.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517063|gb|AAM25221.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 127 Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +++I + + + T AR G+ + ++ + ST+ + + Sbjct: 1 MKEEVYREIGRRLWELRRQRGFTREQAARYLGISQKQLARYEKGREK-----ISTDVLER 55 Query: 61 ILAATNETICQLLDLPF 77 + LLD Sbjct: 56 LAGLYGCDYKYLLDDNE 72 >gi|328947690|ref|YP_004365027.1| hypothetical protein Tresu_0801 [Treponema succinifaciens DSM 2489] gi|328448014|gb|AEB13730.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 109 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K++ E + R+ + NLT LA KA L + + W S +++ KI A Sbjct: 7 QKRLGENVKRIRKEQNLTQFQLAEKAELSEETVKNIELSRC-----WTSDKNLAKITKAL 61 Query: 66 N 66 Sbjct: 62 G 62 >gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT ++ I + + ++ + LA++ G+ T + + P+ + + Sbjct: 5 MTEEYNRLIGKRVKMQRISAKVSQTELAKELGVTQTHLSNIENGRAGLTI--PNLIKLHQ 62 Query: 61 ILAATNETICQLLDLP 76 IL + ++ Sbjct: 63 ILECPISSFFVDIEWE 78 >gi|302520864|ref|ZP_07273206.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302429759|gb|EFL01575.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 402 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 1/130 (0%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S I + I + E ++T LA +A + + K ++ + R + ++ + L Sbjct: 1 MNSTASIGDRIRALRELRDITQEQLAARAEVSVDTVRKLEQNTRQ-SARITTLRALARAL 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 E + + + F P ++ Sbjct: 60 DVQLERLVGQPTVSPQLSEDGGLLALRDSVQALDALPGVSFDADEDAPAERAFSDAVATA 119 Query: 123 IRSPHNGIYA 132 + G YA Sbjct: 120 TLAYWKGEYA 129 >gi|288904901|ref|YP_003430123.1| transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] gi|288731627|emb|CBI13182.1| putative transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] Length = 71 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R L + LA+ A + + + +R PS +I N Sbjct: 3 LKNRLKELRARDGLNQTQLAKLAKVSRQTISLLERNEYT-----PSVIIALRIAHIFN 55 >gi|259506409|ref|ZP_05749311.1| transcription regulator [Corynebacterium efficiens YS-314] gi|259166002|gb|EEW50556.1| transcription regulator [Corynebacterium efficiens YS-314] Length = 110 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%) Query: 1 MTS-FSHKKIW---------EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 M+ SH + W I+ R LT + LA + G++P + + +R G Sbjct: 1 MSMPTSHPRNWGVRPRFLNPHRIELARRRRGLTKTDLAVRLGVNPRTVSGYERSGAP 57 >gi|258507385|ref|YP_003170136.1| hypothetical protein LGG_00390 [Lactobacillus rhamnosus GG] gi|257147312|emb|CAR86285.1| Conserved protein [Lactobacillus rhamnosus GG] gi|259648741|dbj|BAI40903.1| hypothetical protein [Lactobacillus rhamnosus GG] Length = 95 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 11/72 (15%) Query: 1 MTSFSHKKIWEAIDRMAE------RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M + + ID +A+ R ++ LA+K G+ K +R PS Sbjct: 20 MDAVMPPQELNIIDALAKLHSERIRRGISQRELAKKIGMTQPQLAKIERLDSV-----PS 74 Query: 55 TESIFKILAATN 66 ++ + A Sbjct: 75 FNTLNRYAAGLG 86 >gi|238919919|ref|YP_002933434.1| hypothetical protein NT01EI_2023 [Edwardsiella ictaluri 93-146] gi|238869488|gb|ACR69199.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 102 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + LT + +A + G T+ + + G++ PS ++ K AT Sbjct: 44 AARKNAGLTQAQVAERMGTKATAITRMESNLASGQS-GPSFATLKKFAHATG 94 >gi|237743275|ref|ZP_04573756.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|256028631|ref|ZP_05442465.1| MerR family transcriptional regulator [Fusobacterium sp. D11] gi|289766549|ref|ZP_06525927.1| transcriptional regulator [Fusobacterium sp. D11] gi|229433054|gb|EEO43266.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|289718104|gb|EFD82116.1| transcriptional regulator [Fusobacterium sp. D11] Length = 184 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 48/191 (25%), Gaps = 36/191 (18%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + ++ LA K L + ++ ++ PS E++ KI Sbjct: 3 IGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTL--- 54 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 D+ + E + S G I +N Sbjct: 55 -----DVRVAYLLEDEDDDIRNIEYIKKDSIKYIESLDSNIKMG----------ILLSNN 99 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186 ++ S Y G + + I ++ K Sbjct: 100 REKNMEPIIYEIGIDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148 Query: 187 SRRGRSIDLMS 197 +G S+ S Sbjct: 149 LSKGDSLYFKS 159 >gi|224540522|ref|ZP_03681061.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus DSM 14838] gi|224517863|gb|EEF86968.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus DSM 14838] Length = 105 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 15/38 (39%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I EAI + E NLT L G+ +K + Sbjct: 37 IGEAIKQAREARNLTQEQLGELMGVKRAQISKIESGKS 74 >gi|188579020|ref|YP_001915949.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523472|gb|ACD61417.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 62 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 + E + L + G+ + N + + PS F+I E+I + Sbjct: 2 RELREASGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIEHVF 56 Query: 74 DLPF 77 Sbjct: 57 LYED 60 >gi|160893069|ref|ZP_02073857.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50] gi|156865152|gb|EDO58583.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50] Length = 222 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 14/161 (8%), Positives = 36/161 (22%), Gaps = 10/161 (6%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG---------RNRW 52 I I +R T LA K + + +K + + Sbjct: 12 ADMDQISIGRFIAAERKRKGCTQKQLAEKLNISDKTVSKWECGKGFPEVSLLLPLCKELD 71 Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112 + + + E + + + ++ K+ + + Sbjct: 72 ITVNELLSGARVSEEEYQKKAEENMVNMIKEREENKKKLIPTIITGLIATISFITLIMVV 131 Query: 113 NKW-NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR 152 + + VP I + + Y+ Sbjct: 132 AVYTEVIAVPVKILLVVIACVIFGCGLMVAMEGERTIGYYK 172 >gi|149277999|ref|ZP_01884138.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] gi|149231197|gb|EDM36577.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] Length = 108 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 6/73 (8%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I ++ +++ + +A++ + +F+K + + + + +I + Sbjct: 4 IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITD-----INISRLEQIAHLFQVS 58 Query: 69 ICQLLDLPFSDGR 81 ++ + + Sbjct: 59 TMDIISKEGENPQ 71 >gi|118462695|ref|YP_881469.1| prophage regulatory ptotein [Mycobacterium avium 104] gi|118163982|gb|ABK64879.1| putative prophage regulatory ptotein [Mycobacterium avium 104] Length = 194 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 5/72 (6%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +++ I R + L + L GL+ + K + R I Sbjct: 5 QEVGANIRRFRQARGLPQAALGEPLGLNQQAIAKIENGT-----RAVKLAEAAVIARTLG 59 Query: 67 ETICQLLDLPFS 78 + + P Sbjct: 60 VELDDIAAGPER 71 >gi|104780997|ref|YP_607495.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95109984|emb|CAK14689.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 104 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + A+ R + +LT + L + G DP + ++ + PS E++ Sbjct: 1 MTRTGLGPALRRYRKLASLTQAQLGERTGFDPKTISRFETGTYT-----PSIEALMNFAE 55 Query: 64 ATN 66 A Sbjct: 56 ALG 58 >gi|94969065|ref|YP_591113.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551115|gb|ABF41039.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 248 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 5/99 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++ S LAR+ G+ + + R + E + K E Sbjct: 26 LKTIRKKQGWNQSELARRLGVSQPLVSLLESGE-----RVLTPEHLQKFRQMGFELDAGY 80 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 L + + +E+ L +P + + P Sbjct: 81 LPMRQDFETSKLNYARELANLDYPRFAHLKVGEPTLHPM 119 >gi|108801860|ref|YP_642057.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119871013|ref|YP_940965.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126437828|ref|YP_001073519.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108772279|gb|ABG11001.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119697102|gb|ABL94175.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126237628|gb|ABO01029.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 219 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + ++ ++H LT + +A + G+ +K + + + K Sbjct: 36 IGRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSLSTLAL--LAKGFDVP 90 >gi|78059661|ref|YP_366236.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77964211|gb|ABB05592.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 118 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT FS+ A+ +R L+ + +A++ G+ K +R PSTE I + Sbjct: 1 MTPFSN-----ALVYYRKRAGLSQTNVAKQLGVAIQYLWKLERAIKPP----PSTEQIER 51 Query: 61 ILAATNETICQ 71 I A T Sbjct: 52 IAAVLGMTEAD 62 >gi|73748040|ref|YP_307279.1| hypothetical protein cbdb_B6 [Dehalococcoides sp. CBDB1] gi|73659756|emb|CAI82363.1| hypothetical protein, containing a helix-turn-helix motif [Dehalococcoides sp. CBDB1] Length = 123 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 4/95 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + L+ + RK+G+ ++ + G+ + PS +++K Sbjct: 1 MRSEEKTNVGVYLRSLRDTKGLSLREVERKSGVSNAVLSQIE----SGQVKRPSPTTLYK 56 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + +L+ + E + + F Sbjct: 57 LAELYGVPYDELMSRAGYPVPSRHVNETQTAQVVF 91 >gi|312899715|ref|ZP_07759038.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311293147|gb|EFQ71703.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 167 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 21/41 (51%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43 +++KI + I + ++ S +AR+ + ++ ++ + Sbjct: 1 MNNNEKIRDIIVARRKELGISLSEMARRLNIPKSTLSRYEN 41 >gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685111|gb|ADK28033.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302205396|gb|ADL09738.1| Putative transcription regulator [Corynebacterium pseudotuberculosis C231] gi|302329950|gb|ADL20144.1| Putative transcription regulator [Corynebacterium pseudotuberculosis 1002] gi|308275634|gb|ADO25533.1| Putative transcription regulator [Corynebacterium pseudotuberculosis I19] Length = 475 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 12/132 (9%), Positives = 27/132 (20%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + L+ + LA L + N+ + R + + +I Sbjct: 6 VGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDV-----RPLTLPVLHRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 S L D V + Sbjct: 61 ATFFSKDDASRLLAEVHDVMLDKELCPEDIDLQELSDLVDHHPDIARAVVEMHRRYRNVR 120 Query: 129 GIYAIQTQDTRH 140 + T Sbjct: 121 DKLSAATDARLV 132 >gi|300710183|ref|YP_003735997.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] gi|299123866|gb|ADJ14205.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] Length = 71 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + RH LT S LA + + + + PS E F + + +I + Sbjct: 5 LKVRRARHELTQSDLAEAVDVSRQTISAIEAGRYN-----PSLELAFHLAEYFDCSIEDI 59 Query: 73 LDLP 76 + P Sbjct: 60 FEPP 63 >gi|291541918|emb|CBL15028.1| looped-hinge helix DNA binding domain, AbrB family [Ruminococcus bromii L2-63] Length = 136 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 5/38 (13%), Positives = 14/38 (36%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I + + +++ + LA + + S K + Sbjct: 2 IGMNLKYLRKKYGYSQEDLAERLEVSRQSVAKWENEES 39 >gi|284030897|ref|YP_003380828.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283810190|gb|ADB32029.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 830 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 4/94 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + R L+ GLA AGL + +R GR R P ++ + A Sbjct: 22 LRRHRRDAGLSQEGLAELAGLSVDAIAALER----GRRRAPRPHTLRLLGDALRLGAPDR 77 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 L + R + + P + G D Sbjct: 78 AQLTAAARRDGDPSRSTLRPPPVPANRLIGRGDE 111 >gi|257868206|ref|ZP_05647859.1| predicted protein [Enterococcus casseliflavus EC30] gi|257874521|ref|ZP_05654174.1| predicted protein [Enterococcus casseliflavus EC10] gi|257802320|gb|EEV31192.1| predicted protein [Enterococcus casseliflavus EC30] gi|257808685|gb|EEV37507.1| predicted protein [Enterococcus casseliflavus EC10] Length = 166 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + E++ LT S LA + + +K + +PS +++ K Sbjct: 1 MVGMKETILAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGAT-----YPSKKNMIK 55 Query: 61 ILAATNET 68 I + + Sbjct: 56 IAEELDIS 63 >gi|253580990|ref|ZP_04858251.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847653|gb|EES75622.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 66 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 1 MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42 M + KK+ + ER L+ S LA +AG+ + + + Sbjct: 1 MRMDTVKKKLGYTVRSERERLGLSQSSLAERAGVSTRTISDIE 43 >gi|251782567|ref|YP_002996869.1| putative phage DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391196|dbj|BAH81655.1| putative phage DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 116 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 7/94 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +E I +A+ +T L K GL S K + PS E + I N + Sbjct: 5 FERIKELAKSRGITLGSLEEKLGLSRNSIYTIKN-------KKPSAERLQLIADYFNVST 57 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 LL + ++ + S + Sbjct: 58 DYLLGRTDNPAIANGTTGQKTIDFKEIAAQSMSY 91 >gi|229825967|ref|ZP_04452036.1| hypothetical protein GCWU000182_01331 [Abiotrophia defectiva ATCC 49176] gi|229789709|gb|EEP25823.1| hypothetical protein GCWU000182_01331 [Abiotrophia defectiva ATCC 49176] Length = 288 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I E I R+ E +N+T + LA G+ P S K + + P E I K+ A N Sbjct: 2 DIAERIKRLRELYNITANELAEITGIHPVSIRKYETNKMV-----PGIEVIDKMCNALNL 56 Query: 68 TIC 70 + Sbjct: 57 SRM 59 >gi|291298169|ref|YP_003509447.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567389|gb|ADD40354.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 806 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 7/88 (7%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M + K + + L+ LA+KA L P + + + + P ++ Sbjct: 1 MPPETEKTGTCGRLLRAHRLQAGLSQERLAQKAALSPRTIRQIESGRSQ-----PRASTL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKK 86 + A + L + ++ Sbjct: 56 KLLAEALGLSEADWTALLETALPDSQPS 83 >gi|297560527|ref|YP_003679501.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844975|gb|ADH66995.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 202 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 48/136 (35%), Gaps = 7/136 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + ++ T + L+ G+ ++ ++ + +R P+ E +F + A Sbjct: 10 DAVGPRLRALRKQKETTLTDLSAATGISVSTLSRLESG-----SRRPTLELLFPLARAYG 64 Query: 67 ETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIR 124 T+ +L+D P + + + P + G + G + P+ Sbjct: 65 VTLDELVDAPPTGDPRIHLRPVNRHGMTMLPLTRRPGGIQAYKLVIPGRDRPSRPDPQTH 124 Query: 125 SPHNGIYAIQTQDTRH 140 + +Y + + Sbjct: 125 EGYEWLYVLNGRLRVV 140 >gi|257065740|ref|YP_003151996.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256797620|gb|ACV28275.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 129 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + E LT LA+ + + ++ + + R R + + + K L T+ Sbjct: 7 VKELREIKKLTQEDLAKLCNVSTKTISRYELGESKPRYRK-TYDLLAKHLDTTH 59 >gi|94967186|ref|YP_589234.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549236|gb|ABF39160.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 83 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 19/46 (41%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + K++ + + + LT + LA + + + + + E R Sbjct: 6 RTSKQLGALLRKTRKSLGLTQADLASRIDVRQATISDLEHGEREAR 51 >gi|306820407|ref|ZP_07454044.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551570|gb|EFM39524.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 69 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 3/43 (6%), Positives = 14/43 (32%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + + + + + + LA G+ + + + + Sbjct: 7 LKNNLKEIRKEKGYSQTDLAELVGVSRNTISSIETGQFNPTAK 49 >gi|289769604|ref|ZP_06528982.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289699803|gb|EFD67232.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 323 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 2/97 (2%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 R+ E LT LA + G+ P + + R R E+ K+L E Sbjct: 117 RRLRESAALTQPQLATQVGVAPGTVRAWESGRTTPRGR--KREAYAKLLKTLAEEEAAQA 174 Query: 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + + E + P G Sbjct: 175 QAQAPEQEPKPEAEPQPQPELEPQPQPQPVAAPGPTA 211 >gi|251782746|ref|YP_002997049.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391376|dbj|BAH81835.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 257 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + ++ + ++ LA + G + +K + +P E + ++ + Sbjct: 4 GEKLFKLRKEKGISQENLAEQIGTTRQAISKWENNQG-----FPEVEKLLQLSNVFEVS 57 >gi|242241616|ref|ZP_04796061.1| signal peptidase I [Staphylococcus epidermidis W23144] gi|242234932|gb|EES37243.1| signal peptidase I [Staphylococcus epidermidis W23144] Length = 192 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 8/70 (11%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPRTGDIVAKVLISRRGRSIDLM 196 SM P + D +I++ + GD ++ + K L+ + G I+ Sbjct: 31 TVSGLSMYPTFNNKDKVIVSKISKSLNHLDSGDVIVFHKNKKNNFIKRLVGKPGDQIEYK 90 Query: 197 SL----NCCY 202 + N Y Sbjct: 91 NDKLYINKHY 100 >gi|238821343|ref|YP_002925159.1| hypothetical protein PH10_gp26 [Streptococcus phage PH10] gi|238804925|emb|CAY56519.1| hypothetical protein [Streptococcus phage PH10] Length = 112 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 6/97 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E L+ +AR G+ + + +R G +PS + I I + Sbjct: 4 RLKELREDLGLSVKDMARDTGVSQNTIHLYERGG------YPSIKQIEMIAKTYDVNPAW 57 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 L+ + + + ++I P + +F++ Sbjct: 58 LVGWVDDEIQPVIQVVEKIIYKESPTARLPDYFNNNN 94 >gi|228919863|ref|ZP_04083219.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839764|gb|EEM85049.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 149 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|228995761|ref|ZP_04155422.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17] gi|229003381|ref|ZP_04161205.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4] gi|228757871|gb|EEM07092.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4] gi|228764005|gb|EEM12891.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17] Length = 73 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + I + +N++ LA K + + N + + PS F++ Sbjct: 7 RKDVKNQIYALRTENNISQGALADKCKVSRQTINAIENNKYD-----PSLALAFRLAEVL 61 Query: 66 NET 68 T Sbjct: 62 GTT 64 >gi|255279970|ref|ZP_05344525.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255269743|gb|EET62948.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 257 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ + + ++ LT LA+K + + +K +R P + Sbjct: 1 MDETGKEQFGRFVAQQRKKKKLTQKELAQKLYVSDKAVSKWERGSS-----MPDIALLTP 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95 + A T+ +LL+ + + + L Sbjct: 56 LAEALGVTVTELLEGKEMEKTEESRMADDSHLEML 90 >gi|190572214|ref|YP_001970059.1| putative HTH-type transcriptional regulator HipB [Stenotrophomonas maltophilia K279a] gi|190010136|emb|CAQ43744.1| putative HTH-type transcriptional regulator HipB [Stenotrophomonas maltophilia K279a] Length = 85 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T + +++ + + L+ + LA + G+ + +R S E + +I Sbjct: 7 TVRTAQQLAPLMRAFRRQAGLSQAQLAERLGISRQAVGALERD-----PASASFERLMRI 61 Query: 62 LAATN 66 A Sbjct: 62 WAVLG 66 >gi|167840953|ref|ZP_02467637.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia thailandensis MSMB43] Length = 191 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + +R LT A AGL ++ +R PS S+ I A T Sbjct: 15 IGNKMRALRQRLGLTLDEAAAAAGLSKPFLSQVERGRAT-----PSITSLVGIARALGVT 69 Query: 69 ICQL 72 + Sbjct: 70 MQYF 73 >gi|149920828|ref|ZP_01909291.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149818346|gb|EDM77798.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 120 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 5/85 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + LT GLA +A L + + + G PS ++ K+ Sbjct: 15 RFGRHVRGLRRARGLTQEGLAERADLSADTIRRLENGGF-----SPSLVTLVKLTRGLEL 69 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92 + L+ E++ ++ + Sbjct: 70 RLSTLIASYEMWLLPAERELADLLV 94 >gi|153954548|ref|YP_001395313.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347406|gb|EDK33942.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 71 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I+ + +R L LA+ + + + + PS E F I ++I ++ Sbjct: 5 IEELRKRIGLNQEKLAKALKVSRQTISSIETGKYN-----PSLELAFAISDYFGKSIEEI 59 Query: 73 LDLPFS 78 Sbjct: 60 FIHERR 65 >gi|56459168|ref|YP_154449.1| DNA-binding HTH domain-protein [Idiomarina loihiensis L2TR] gi|56178178|gb|AAV80900.1| Membrane associated protein containing xre-family DNA-binding HTH domain [Idiomarina loihiensis L2TR] Length = 136 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 4/121 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ ER N + LA +GL + + + + S +S+ + + + Sbjct: 2 IKKLRERKNWSQEQLAIMSGLSVRTIQRIESGN---KASMESLKSLASVFEVDVSKLTEE 58 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIY 131 + + + + +++ L F + + P+I + Sbjct: 59 ITVIDKESKYWKQQPVWFKLSLFGVNRRNKLVWVEYLSVLLGLATWIIHPDIFATSAFFL 118 Query: 132 A 132 A Sbjct: 119 A 119 >gi|13541016|ref|NP_110704.1| transcription regulator [Thermoplasma volcanium GSS1] Length = 194 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 5/79 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + +M + ++ LAR G+ + + ++ I P+ I I ++ + Sbjct: 10 LRKMRKNLGISQKDLARVTGVSQSYIARLEKGTIN-----PTYSKIKAIYEYLTKSSEKA 64 Query: 73 LDLPFSDGRTTEKKEKEIP 91 + + + + Sbjct: 65 NTIALTCDKIMTRNVVVCR 83 >gi|53718188|ref|YP_107174.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167814172|ref|ZP_02445852.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|52208602|emb|CAH34538.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 158 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 9/101 (8%) Query: 1 MTSFSHKKIW----EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M H+ + E + + +R L+ LA +A L T+ ++ GR Sbjct: 1 MPKL-HEAVANGLSERLRTIRKRAGLSQDELAARASLARTNLASVEQ----GRRANLRLS 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 ++ ++ + + ++ ++ Sbjct: 56 TLSRLADVLGVDVLDFFCDRPVGEQEPAGEDAPARVIANVK 96 Score = 37.8 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ L+ L+ KA T + + P + + A Sbjct: 90 RVIANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAA-----SPMVVDLQDLADALGI 144 Query: 68 T 68 + Sbjct: 145 S 145 >gi|307354843|ref|YP_003895894.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307158076|gb|ADN37456.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 77 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 5/65 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 I + +T LA K + + ++ PS K+ N I Sbjct: 3 NRIKELRNERGVTQQELAEKVDVSSRTIISLEKGQYN-----PSVLLAHKLAVFFNCAIE 57 Query: 71 QLLDL 75 ++ Sbjct: 58 EVFIF 62 >gi|304403726|ref|ZP_07385388.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346704|gb|EFM12536.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 116 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 5/87 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + I + + LT LA + + +R R S E++ KI A Sbjct: 6 ELVGARIREIRKSKGLTQDQLAEISQFHYSYIGGVERGE-----RNVSLENLAKIADALQ 60 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 + D + + EI L Sbjct: 61 VKLSLFFDYEEPKSSAVDSELDEIIYL 87 >gi|303243062|ref|ZP_07329512.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302589397|gb|EFL59195.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 114 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + NLT LA K + + + +R +R S E++ ++ + + Sbjct: 6 LGERIRKQRLKVNLTQEQLAEKIDMSYSFVGQIERG-----DRVLSLETLVRLANELSIS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 + L+ L Sbjct: 61 VDYLIQDSLKFTPEVFISSALTNL 84 >gi|238925355|ref|YP_002938872.1| hypothetical protein EUBREC_3010 [Eubacterium rectale ATCC 33656] gi|238877031|gb|ACR76738.1| Hypothetical protein EUBREC_3010 [Eubacterium rectale ATCC 33656] gi|291527628|emb|CBK93214.1| transcriptional regulator, XRE family [Eubacterium rectale M104/1] Length = 100 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I ID + +NLT LA + G+D +K + R PS + + ++ Sbjct: 34 IRAMIDARIK-NNLTQKELAARTGIDQADISKLENGT-----RNPSLKLLKRLAHGMGM 86 >gi|260589105|ref|ZP_05855018.1| putative DNA-binding protein [Blautia hansenii DSM 20583] gi|260540525|gb|EEX21094.1| putative DNA-binding protein [Blautia hansenii DSM 20583] Length = 45 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 17/40 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 KI + I + +T LA K G+ S +K + + Sbjct: 5 KIGKYIAGKRKSLGMTQKQLAEKIGMSDKSVSKWESGVSQ 44 >gi|188590232|ref|YP_001921142.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] gi|188500513|gb|ACD53649.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] Length = 134 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + + I + + LT + L R G+ T+ + + P+ E FKI A Sbjct: 4 LADRIKDLRKSKKLTQTDLGRILGVGKTTISMYENGNST-----PNDEIKFKIAAFF 55 >gi|206968183|ref|ZP_03229139.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|229177566|ref|ZP_04304944.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] gi|206737103|gb|EDZ54250.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|228605928|gb|EEK63371.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] Length = 149 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|167578195|ref|ZP_02371069.1| DNA-binding protein [Burkholderia thailandensis TXDOH] gi|167819326|ref|ZP_02451006.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167849172|ref|ZP_02474680.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167897769|ref|ZP_02485171.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167906116|ref|ZP_02493321.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|257142894|ref|ZP_05591156.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 69 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + + LT + LA + +D + +K +R Sbjct: 6 LRALRRAAGLTQTQLAERLSIDQSYLSKIERGER 39 >gi|149183902|ref|ZP_01862291.1| transcriptional regulator [Bacillus sp. SG-1] gi|148848385|gb|EDL62646.1| transcriptional regulator [Bacillus sp. SG-1] Length = 118 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E I + E +T + LA++A + + + +R + PS + + KI AA Sbjct: 2 VGEKIKSIRENKGITINELAQRADISKSYISTIERDI----QKNPSIKVLEKIAAALE 55 >gi|147678779|ref|YP_001212994.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146274876|dbj|BAF60625.1| hypothetical transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 97 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + + +T +A KAGL ++ + R P+ ++ KI A Sbjct: 36 DLIAQIIKTRKEKGMTQKDVADKAGLTQQMVSRIES-----REHLPNYRNLVKIADAL 88 >gi|91790906|ref|YP_551857.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91700786|gb|ABE46959.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 167 Score = 42.8 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 6/68 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ + R L+ L + AGL + N+ + G+ S + Sbjct: 1 MAILS--ELSNVVKRQRSEMGLSQERLGKLAGLSRATINELE----TGKLANLSLTRAER 54 Query: 61 ILAATNET 68 + Sbjct: 55 LANVLGYG 62 >gi|330722090|gb|EGH00006.1| hypothetical protein imdm_235 [gamma proteobacterium IMCC2047] Length = 285 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 13/164 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + NL+ +A K GL + + +R S SI K+ A + + Sbjct: 105 IGPQLRALRNKKNLSLRDVASKTGLAASLISTLERTSTGA-----SAASIHKLAAFYDTS 159 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRS 125 + +L S E P + P S Sbjct: 160 VTELSKAQASSAPRQESGVVRADEARVVAMFGPDIRIEQRAPNDAAMDCQKWTLQPGTSS 219 Query: 126 PHNGIYAIQTQDTRHK-----TQDTSMLPLYRKGDILILNSAIQ 164 + + + D L GD + +S Sbjct: 220 EEAYSHEGEEFIYVLRGLLEVVLDGCERQLLYPGDNIYFDSNRP 263 >gi|318057400|ref|ZP_07976123.1| putative DNA-binding protein [Streptomyces sp. SA3_actG] gi|318076541|ref|ZP_07983873.1| putative DNA-binding protein [Streptomyces sp. SA3_actF] Length = 402 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 1/130 (0%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S I + I + E ++T LA +A + + K ++ + R + ++ + L Sbjct: 1 MNSTASIGDRIRALRELRDITQEQLAARAEVSVDTVRKLEQNTRQ-SARITTLRALARAL 59 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 E + + + F P ++ Sbjct: 60 DVQLERLVGQPTVSPQLSEDGGLLALRDSVQALDALPGVSFDADEDAPAERAFSDAVATA 119 Query: 123 IRSPHNGIYA 132 + G YA Sbjct: 120 TLAYWKGEYA 129 >gi|315648648|ref|ZP_07901744.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275850|gb|EFU39201.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 189 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 HKK+ + + + L+ +A G+ + +R P+ +++I++ Sbjct: 5 HKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSN-----PTISVLWRIVSGL 59 Query: 66 NETI 69 + Sbjct: 60 GISF 63 >gi|294615610|ref|ZP_06695466.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|291591553|gb|EFF23206.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|323481029|gb|ADX80468.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 394 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFNQLESFNPD 64 >gi|255316571|ref|ZP_05358154.1| hypothetical protein CdifQCD-7_19592 [Clostridium difficile QCD-76w55] Length = 227 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 35/116 (30%), Gaps = 5/116 (4%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 K + + ++ N+T +A K GL + + + G R P+ ++ + L Sbjct: 38 EKDFIQNLVNFRKKQNITQKEIAEKTGLTQQAISGIETGG-----RKPTLINLIRYLQGI 92 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 I L ++ + + + F + + + Sbjct: 93 GININDLFIENRTNLKLEQIGYIDELYYLFLEKFNYVTEVLKDNNIKDSEWDIDFI 148 >gi|226325593|ref|ZP_03801111.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758] gi|225205717|gb|EEG88071.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758] Length = 336 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 5/87 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I +++ + LA + G+ + +K + G P + I ++ + Sbjct: 3 LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAV-----PDLQRILQMSELFCVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95 LL T ++ E Sbjct: 58 TDYLLKDEMKAENITYQESTERYAEPL 84 >gi|172035824|ref|YP_001802325.1| hypothetical protein cce_0908 [Cyanothece sp. ATCC 51142] gi|171697278|gb|ACB50259.1| hypothetical protein cce_0908 [Cyanothece sp. ATCC 51142] Length = 115 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 20/54 (37%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + I + ++ + LA+K +D T +K + + + + L Sbjct: 6 GQVIRQRRKKKGYSQRELAQKLEIDFTYLSKLENDRAKYSPKEDIIRDLAAYLD 59 >gi|170760881|ref|YP_001786959.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407870|gb|ACA56281.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 370 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I E I R+ + +T LA G+ + +K + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTS 43 >gi|148379505|ref|YP_001254046.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932694|ref|YP_001383881.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935321|ref|YP_001387431.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288989|emb|CAL83077.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928738|gb|ABS34238.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931235|gb|ABS36734.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 370 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I E I R+ + +T LA G+ + +K + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTS 43 >gi|86360696|ref|YP_472584.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284798|gb|ABC93857.1| probable transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 190 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 47/177 (26%), Gaps = 22/177 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T + LA G+ +K + I PS ++ + A Sbjct: 3 IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 57 Query: 69 ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + R + + LL + + G T Sbjct: 58 LTAFFRRYEEPRNAVFVKAGQGVELERRGTRAGHQYNLLGHIDNNTSGVIVEPYLITLTA 117 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + V +Y ++ + + + + GD L ++ + Sbjct: 118 DSDVFPTFQHEGMEFLYMLEGE--VIYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 171 >gi|52142223|ref|YP_084606.1| DNA-binding protein; transcriptional regulator [Bacillus cereus E33L] gi|51975692|gb|AAU17242.1| DNA-binding protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 374 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + K F Sbjct: 56 YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99 >gi|23464934|ref|NP_695537.1| hypothetical protein BL0333 [Bifidobacterium longum NCC2705] gi|239622527|ref|ZP_04665558.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23325529|gb|AAN24173.1| hypothetical protein with helix turn helix motif [Bifidobacterium longum NCC2705] gi|239514524|gb|EEQ54391.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 298 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + N+ LA G+ + +K + +P + + I T+ Sbjct: 5 ANLQYLRAQRNMPQEQLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59 Query: 71 Q 71 Sbjct: 60 D 60 >gi|325521409|gb|EGD00242.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 87 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 6/90 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ + E + L+ LA +AG+ T+ + + ++ + Sbjct: 1 MTTL--ADVAEMLREARRTAGLSQQELADRAGVARTTLARMETLARS----DMRASALVR 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEI 90 +L A + + +++ + Sbjct: 55 LLEAAGYDLRTVRRGHGRTLDDILTEQRTM 84 >gi|319796576|ref|YP_004158216.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315599039|gb|ADU40105.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 175 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 9/109 (8%), Positives = 25/109 (22%), Gaps = 15/109 (13%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + + ++ LT + G+ + + E + K+L+A Sbjct: 9 DQLRPHLKALRKKRGLTQAQAGALVGVSQARIAEIE-----ANPGAVGLEHLAKLLSALG 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + + P+ W Sbjct: 64 AS----------FYLRDDAPPSSGPVYAMEEGPEYASSQDTDVKVPEGW 102 >gi|307131678|ref|YP_003883694.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] gi|306529207|gb|ADM99137.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] Length = 81 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + E L+ LA G+D + + +R R + ++ +I A + Sbjct: 17 LGQTIRQRREFLGLSQENLASATGIDRSHMGRIERGE-----RNVTLLNLLRIADALEWS 71 Query: 69 ICQ 71 + Q Sbjct: 72 LEQ 74 >gi|256850687|ref|ZP_05556112.1| rad protein [Lactobacillus crispatus MV-1A-US] gi|256712555|gb|EEU27551.1| rad protein [Lactobacillus crispatus MV-1A-US] Length = 112 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 5/64 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I + T LA + T+ + + E PS +++ K+ + Sbjct: 2 NLAERIKNARINKHYTQKDLAELINVKSTTVSGWELGRNE-----PSIDTLKKLATKLDV 56 Query: 68 TICQ 71 + Sbjct: 57 SFDY 60 >gi|253579866|ref|ZP_04857134.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848865|gb|EES76827.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 73 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 16/40 (40%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 AI + ++T LA AG+ + N ++ + Sbjct: 6 AIKVARAQKDMTQKALAEAAGISRQTMNAIEKGEYNPTIK 45 >gi|228911728|ref|ZP_04075501.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] gi|228847886|gb|EEM92767.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] Length = 374 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 18/190 (9%), Positives = 52/190 (27%), Gaps = 14/190 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + I + +T LA G+ S +K + +P + + + N Sbjct: 5 QIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNI 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 +I +L+ + K F ++ + Sbjct: 60 SIDELISYTPQMKQEDIKNLYHRLAEAFSEKTFAEVMIECRGIIKKYYSCFPL------L 113 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLI 186 + + + + + L + D L+ + + +++ Sbjct: 114 LQMGLLFINHHMLTEDTDKRIEILEEAMHLFSRVQEE--SDDVSLVKEAVSFQATCYLIL 171 Query: 187 SRRGRSIDLM 196 ++ + L+ Sbjct: 172 NKPNEVLQLL 181 >gi|222096786|ref|YP_002530843.1| transcriptional regulator [Bacillus cereus Q1] gi|221240844|gb|ACM13554.1| transcriptional regulator [Bacillus cereus Q1] Length = 374 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + I + +T LA G+ S +K + +P + + + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 N +I +L+ + K F Sbjct: 56 YFNISIDELISYKPQMEQEDIKDLYHRLAEAFSEEPFDEVMMEC 99 >gi|221201483|ref|ZP_03574522.1| repressor protein CI [Burkholderia multivorans CGD2M] gi|221207961|ref|ZP_03580967.1| repressor protein CI [Burkholderia multivorans CGD2] gi|221172146|gb|EEE04587.1| repressor protein CI [Burkholderia multivorans CGD2] gi|221178751|gb|EEE11159.1| repressor protein CI [Burkholderia multivorans CGD2M] Length = 132 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 6/62 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + LT LA K GL + ++ + +G + I Sbjct: 7 GKRLRAARKGARLTQKQLADKVGLKQATISELENDEYDGSAKT------AAIADVLGVNA 60 Query: 70 CQ 71 Sbjct: 61 LW 62 >gi|254417612|ref|ZP_05031348.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] gi|196175582|gb|EDX70610.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] Length = 91 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 3/91 (3%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT K+ + + ER NLT LAR+ + ++ + + R P +++ + Sbjct: 1 MTKKQSKEAESPLKILRERLNLTQEELARQCRIPLRTYVRWETGEATPRPTIPQVKALCR 60 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIP 91 +I L D + + + Sbjct: 61 ---ELGVSIEDLPDEFGPMQVSAKDNPRSQS 88 >gi|168179461|ref|ZP_02614125.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC 2916] gi|182669609|gb|EDT81585.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC 2916] Length = 144 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 4/103 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + E + L ++A + ++ + G+ + P+T+++ KI A ++ + Sbjct: 7 IIKCLENKGWSRYKLCQEANIAQSTLSDIL----SGKAKNPNTKTLQKIADALGVSVNEF 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 D D + +E Y S ++ + + Sbjct: 63 FDDSNEDTKKDINIPQEYSDKYKVTSRDKKQYEEEMKKANEAF 105 >gi|168495167|ref|YP_001686905.1| hypothetical protein APCd_gp64 [Azospirillum phage Cd] gi|168148926|emb|CAO99390.1| hypothetical protein [Azospirillum phage Cd] Length = 125 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + N T LAR++GL P K + +G+++ P+ E++ KI+ A Sbjct: 41 DTLRAARALLNWTREELARRSGLSPQLVQKIE----DGKSKRPAHETVKKIIGAFLSAGV 96 Query: 71 QLLDLPFSDGR 81 + ++ Sbjct: 97 EFIEPGEPLPP 107 >gi|160944538|ref|ZP_02091766.1| hypothetical protein FAEPRAM212_02051 [Faecalibacterium prausnitzii M21/2] gi|158444320|gb|EDP21324.1| hypothetical protein FAEPRAM212_02051 [Faecalibacterium prausnitzii M21/2] Length = 196 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM P DI++L + + G+ ++ K +I + G I Sbjct: 58 VLQVSGDSMNPTLNDKDIILLVKSNHIENGELC-GFYWQNKLLLKRIIGQPGDVI 111 >gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 16/36 (44%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 + I + ++ LT + L + G+ + +K + Sbjct: 8 LVNRIAELRKKLGLTQTRLGEEIGVSQQTISKYENG 43 >gi|134298756|ref|YP_001112252.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051456|gb|ABO49427.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 106 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 5/83 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I ++ + + + LA+++GL ++ + + P+ +S+ +I ++ Sbjct: 5 NISFKITKLRKSVGWSKNKLAKESGLSQAYISQLEAGQKQ-----PTIDSLDRICSSLGL 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90 T+ + + Sbjct: 60 TLAEFFSEENKPLSPDIAQLVNH 82 >gi|147920208|ref|YP_686025.1| transcription regulator [uncultured methanogenic archaeon RC-I] gi|121683053|sp|Q0W4J4|Y1526_UNCMA RecName: Full=Putative HTH-type transcriptional regulatory protein UNCMA_15260 gi|110621421|emb|CAJ36699.1| predicted transcription regulator [uncultured methanogenic archaeon RC-I] Length = 324 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 14/137 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + E N++ LA G+ + +K + + E+ K+ + I Sbjct: 129 GETLRSLREAKNISLGELAMALGVSRRTISKYESGMNA------TIEAALKLEEILDAPI 182 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +++ RT + + L + + + +G + Sbjct: 183 ACPVNMIVMFERTAKDADPSPNDLRNASALEKEALGTLM--------HIGFEVFHTTKAP 234 Query: 130 IYAIQTQDTRHKTQDTS 146 A+ D S Sbjct: 235 FNALSQDDAAKMITGVS 251 >gi|73748389|ref|YP_307628.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|147669169|ref|YP_001213987.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432437|ref|YP_003462310.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660105|emb|CAI82712.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|146270117|gb|ABQ17109.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288946157|gb|ADC73854.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 67 Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + R+NLT S LA G+ + ++ PS K+ A + Sbjct: 3 LRTRIKELRARYNLTQSELAETVGVSRQTMLYLEKGKYN-----PSLILAHKVAKALHAD 57 Query: 69 ICQLLDLPF 77 I + L Sbjct: 58 IEDVFILRD 66 >gi|310827713|ref|YP_003960070.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308739447|gb|ADO37107.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 68 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 5/43 (11%), Positives = 15/43 (34%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + + + + L+ S LA G+ + + + + Sbjct: 7 LKNRLKEIRKEKKLSQSALAELVGVSRNTISSIETGQFNPTAK 49 >gi|295132275|ref|YP_003582951.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294980290|gb|ADF50755.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 140 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 8/112 (7%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T SH I I R+ E + LA + G+ S + ++ E + K+ Sbjct: 11 TKTSH--IGRKISRIRELRGMKQEALAAELGISRQSVSSLEQSE------HIEDEKLEKV 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 + + + ++ F + D + Sbjct: 63 AKVLGVSKEAIENFSEELAINFFNSFQDSSNGTFNNHCTFNPLDKLMESVEE 114 >gi|259502231|ref|ZP_05745133.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169849|gb|EEW54344.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 126 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 14/116 (12%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M F H+ + + + L+ LA + + + +K + P + I + Sbjct: 1 MNKFQHQ-----LANLRQAAGLSQEQLADQLHVSRQAVSKWENGST-----LPDIDKIVQ 50 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I ++ +L+ T + K L+ S N W Sbjct: 51 IADILQVSLDELVLGK----APTVSQSKLDRLIDAHLQQSQQENHWRYREINNGWE 102 >gi|257891593|ref|ZP_05671246.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257827953|gb|EEV54579.1| transcriptional regulator [Enterococcus faecium 1,231,410] Length = 147 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ S +++ KI Sbjct: 11 LKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTA-----SIKTMRKIFDQLESFNPD 64 >gi|257888763|ref|ZP_05668416.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257824817|gb|EEV51749.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 72 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + E +L LA+ + T++++ + ++ T+S+ K+ + +I Sbjct: 4 RIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLD-----IPTQSLIKLADFYSTSIDY 58 Query: 72 LLDLPFSDGRTTEK 85 LL+L Sbjct: 59 LLNLTDQKEPYPRN 72 >gi|238754555|ref|ZP_04615909.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] gi|238707186|gb|EEP99549.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] Length = 166 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + E + + ++ A + G + ++ +R G S ++I Sbjct: 13 MKKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 67 Query: 61 ILAATNETICQ 71 + A + Q Sbjct: 68 LANALSVEPWQ 78 >gi|223041638|ref|ZP_03611835.1| putative transcriptional regulator [Actinobacillus minor 202] gi|240948104|ref|ZP_04752514.1| putative transcriptional regulator [Actinobacillus minor NM305] gi|223017502|gb|EEF15916.1| putative transcriptional regulator [Actinobacillus minor 202] gi|240297584|gb|EER48076.1| putative transcriptional regulator [Actinobacillus minor NM305] Length = 99 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 2 TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 + S + I E + + E N++ LA G+ + K ++ ++ P ++ + Sbjct: 20 KALSEQLIQEVGLAHLREELNISQKQLAEALGISQPAVAKIEQ-----KDNDPRLSTLKR 74 Query: 61 ILAATN 66 + A Sbjct: 75 YIEAMG 80 >gi|213972069|ref|ZP_03400162.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] gi|213923155|gb|EEB56757.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] Length = 118 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + H LA G + + ++ +R P+ + + K+ A + Sbjct: 8 IGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGT-----PNLDHLVKLCVALKIS 62 Query: 69 ICQLLDLPFSDGRTTEKK 86 +LL Sbjct: 63 PAELLPADGISSSREHLP 80 >gi|91773669|ref|YP_566361.1| XRE family transcriptional regulator [Methanococcoides burtonii DSM 6242] gi|91712684|gb|ABE52611.1| Helix-turn-helix-containing transcriptional regulator, XRE family [Methanococcoides burtonii DSM 6242] Length = 65 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + R++LT LA+K G+ + ++ + T I K+ +T Sbjct: 4 RIKELRARYDLTQEELAKKVGVRRETILFLEKGKYNPSLKLAYT--IAKVFDST 55 >gi|16126471|ref|NP_421035.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235251|ref|YP_002517688.1| Cro/CI family transcriptional regulator [Caulobacter crescentus NA1000] gi|13423739|gb|AAK24203.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964424|gb|ACL95780.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus NA1000] Length = 64 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + + LA + + + N + + PS FKI + Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYD-----PSLPLAFKIARLFGQP 55 >gi|81427908|ref|YP_394907.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609549|emb|CAI54595.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 103 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + I ++ LT LA K+G + ++ +R ++ + + I A Sbjct: 3 DTISQMIREHRKQLGLTIEELAEKSGSSYSFISRIERGEVD----NLKIKKLNDIAEALG 58 Query: 67 ETICQLL 73 + Sbjct: 59 IELIDFF 65 >gi|23100309|ref|NP_693776.1| hypothetical protein OB2854 [Oceanobacillus iheyensis HTE831] gi|22778541|dbj|BAC14810.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 179 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + E+ + LA K + S +K + +PS E I + + TI Sbjct: 31 GEKLKKEREKRGWSQDYLAEKVYVSRQSVSKWETGKN-----YPSIEVIINLSDLFDITI 85 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + K++ + Sbjct: 86 DELLRSDEELKEKVIRDSKQLAYPKW 111 >gi|67925835|ref|ZP_00519128.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501] gi|67852317|gb|EAM47783.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501] Length = 92 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 7/68 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +I AI + LT LA++ + + + + +++ + Sbjct: 24 MAM--EFEIASAIIAARTQAGLTQEELAQRMCAKQSQIARWESGEQNA-----TLKTLKR 76 Query: 61 ILAATNET 68 I AT Sbjct: 77 IAEATGTN 84 >gi|329295509|ref|ZP_08252845.1| XRE family transcriptional regulator [Plautia stali symbiont] Length = 99 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 7 KKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +KI E + ++ E L+ LA K G+ + + R S+ K + A Sbjct: 25 EKILEIRLRQLREELALSQVQLAEKMGVSQPAIAAIE-----ARGDELKLSSLKKYVEAL 79 Query: 66 N 66 Sbjct: 80 G 80 >gi|322374109|ref|ZP_08048643.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321277075|gb|EFX54146.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 69 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + + + ++ + LA + G+ + ++ S E FKI +TI ++ Sbjct: 9 IQELRKANKISQAELADEMGVTRQTIISLEKGRYNA-----SLELAFKIARYFGKTIEEV 63 Query: 73 LDLPF 77 Sbjct: 64 FLFEE 68 >gi|304311160|ref|YP_003810758.1| hypothetical protein HDN1F_15230 [gamma proteobacterium HdN1] gi|301796893|emb|CBL45106.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length = 82 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Query: 1 MTS-FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 MTS S +++ A+ ++ LT LA AG+ + R E++ Sbjct: 1 MTSIRSPQQLGHALRAARKQLGLTQPQLALAAGVGVRFIVDLEAGNPTLR-----LENVL 55 Query: 60 KILAATN 66 +++ A Sbjct: 56 RVIDALG 62 >gi|301382108|ref|ZP_07230526.1| peptidase [Pseudomonas syringae pv. tomato Max13] Length = 151 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 33/139 (23%), Gaps = 6/139 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + LT LA G+ + ++ +R T + +I A Sbjct: 10 LGGRVKLARDATGLTQLELAELVGVSQAAISEIERGESA------RTAYLPEISRACGAD 63 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 I L + + S P N + Sbjct: 64 IQWLAFGGERPASEPCEPAPTVAEKPQEISFCIEGMGFSGMPLKRVANYISALSDLVGKT 123 Query: 129 GIYAIQTQDTRHKTQDTSM 147 I+ T + +S Sbjct: 124 AIFIRMTDSSIVFYDGSSS 142 >gi|300725156|ref|YP_003714484.1| putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297631701|emb|CBJ92414.1| Putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061] Length = 182 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 5/113 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +++ R R L+ + +AR+AG+ ++ ++ + PS E+++ + A N Sbjct: 8 IAKSLVRERARTGLSLAEVARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVALNIP 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121 +LL+ + + + E + + + + + P Sbjct: 63 FARLLEPQSNQTQVIRRGEGTKVVAERANYQATLLATCPPGARRDIYLLITQP 115 >gi|312198964|ref|YP_004019025.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311230300|gb|ADP83155.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 221 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 5/79 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + R+ + LT + LA ++G+ +K + S ++ ++ A + Sbjct: 36 IAAQVRRLRQGAGLTLAELATRSGISKPMLSKIENANTSC-----SLTTLARLADALDVP 90 Query: 69 ICQLLDLPFSDGRTTEKKE 87 + L Sbjct: 91 VTALFRGADDQREAVFTPA 109 >gi|261408465|ref|YP_003244706.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284928|gb|ACX66899.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 189 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 5/99 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 HKK+ + + + L+ +A G+ + +R P+ +++I++ Sbjct: 5 HKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSN-----PTISVLWRIVSGL 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + L++ ++ + E F Sbjct: 60 GISFTTLIEEAETEVTVVSPDDVEPFHEAEGAYRVYPLF 98 >gi|166364680|ref|YP_001656953.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166087053|dbj|BAG01761.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 118 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 18/53 (33%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + + I + + LA+ G+D T +K + ES+ Sbjct: 3 ETFGQVIRKARREEEYSQRELAKLIGVDYTYLSKLENDHAGYPPSQQVIESLA 55 >gi|332364291|gb|EGJ42066.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 99 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 E + + NLT +A K + ++ + R P E++ K Sbjct: 4 ERLKSLRLEANLTQKQVAEKLNMSQPAYQSWESG-----KRKPGEETLNKFANFF 53 >gi|332560550|ref|ZP_08414868.1| hypothetical protein RSWS8N_15929 [Rhodobacter sphaeroides WS8N] gi|332274348|gb|EGJ19664.1| hypothetical protein RSWS8N_15929 [Rhodobacter sphaeroides WS8N] Length = 212 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 28/198 (14%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 +A+ R + + + KAG+ + ++G++ + + KI AA + Sbjct: 7 DALARALKETKRSLRSVCLKAGVSY----DQMKSLMQGKSGSTNIDDGIKIAAAFGVS-- 60 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 ++ + + +G+ + G+ V P PH Sbjct: 61 -----IEDFFAGVFDRQPSVAVAGKVGAGAHVDLVDA-YAKGDGMYHVACPPQLKPHG-- 112 Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI------QVNCGDRLLIKPRTGDIVAKV 184 + + SMLPL+R G +L A + + + G KV Sbjct: 113 ------IVAVEVEGDSMLPLHRPGSVLFYTRAAAEGVPVEAVN-SPCVCEDVDGRAWLKV 165 Query: 185 LISRR-GRSIDLMSLNCC 201 + + L+SLN Sbjct: 166 VKIGSQEGTFSLLSLNPD 183 >gi|319647196|ref|ZP_08001418.1| immunity repressor protein [Bacillus sp. BT1B_CT2] gi|317390543|gb|EFV71348.1| immunity repressor protein [Bacillus sp. BT1B_CT2] Length = 147 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 5/83 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ T + LA KA + + +R PS E++ I A N Sbjct: 3 VGQRLKYWRKQKGYTQAQLAEKANMSRSYVADVERDRYN-----PSVETLSSIAKALNIP 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91 + LL+ + ++ + Sbjct: 58 VSNLLEDNQRLVSESPEEYRTSE 80 >gi|317500517|ref|ZP_07958740.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331089383|ref|ZP_08338282.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898106|gb|EFV20154.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330404751|gb|EGG84289.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium 3_1_46FAA] Length = 118 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 4/36 (11%), Positives = 11/36 (30%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + + L LA K + + ++ + Sbjct: 4 NRVKELRTERGLRQGDLAEKMNVSQQTISRIENGEN 39 >gi|315163418|gb|EFU07435.1| helix-turn-helix protein [Enterococcus faecalis TX0645] Length = 78 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 3/51 (5%) Query: 3 SFSHKKIW---EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 +I + R + + + LA+K + + + + Sbjct: 1 MEQEGRIMKKVSNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKP 51 >gi|306838790|ref|ZP_07471622.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406126|gb|EFM62373.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 73 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 9/77 (11%), Positives = 25/77 (32%), Gaps = 9/77 (11%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + R+ LT + ++G + ++ R P+ ++++ Sbjct: 1 MRKL----VGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQG-----RRNPTVITLYE 51 Query: 61 ILAATNETICQLLDLPF 77 + A + +L Sbjct: 52 LAQALGVSHVELFKPDE 68 >gi|269955724|ref|YP_003325513.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304405|gb|ACZ29955.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 505 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + +T LA G P+ + + R P+ + + A Sbjct: 29 IGRRIRHLRTERGMTLDDLAAAIGKAPSQVSLLENG-----KREPTIARLQAVARALGAG 83 Query: 69 ICQ 71 + Sbjct: 84 VED 86 >gi|254462341|ref|ZP_05075757.1| hypothetical protein RB2083_2932 [Rhodobacterales bacterium HTCC2083] gi|206678930|gb|EDZ43417.1| hypothetical protein RB2083_2932 [Rhodobacteraceae bacterium HTCC2083] Length = 68 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 10/74 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H + T + LA G+ S N + R PST + Sbjct: 1 MAKL-HNT----LKAHRTDKGFTQASLAEAVGVSRKSINTIEN-----RVFTPSTLLALQ 50 Query: 61 ILAATNETICQLLD 74 I A ++ + Sbjct: 51 IADALECSVHDIFY 64 >gi|159027322|emb|CAO86864.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 118 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 18/53 (33%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 + + I + + LA+ G+D T +K + ES+ Sbjct: 3 ETFGQVIRKARREEEYSQRELAKLIGVDYTYLSKLENDHAGYPPSQQVIESLA 55 >gi|118575669|ref|YP_875412.1| transcriptional regulator [Cenarchaeum symbiosum A] gi|118194190|gb|ABK77108.1| transcriptional regulator [Cenarchaeum symbiosum A] Length = 185 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I ++ + +T LA AG+ + N+ + + PS E+ +I Sbjct: 8 IRQVRTKLGITQKRLASLAGVSTSMINQIESGRSQ-----PSYETAKRIFDNL 55 >gi|70731576|ref|YP_261317.1| RulA protein [Pseudomonas fluorescens Pf-5] gi|68345875|gb|AAY93481.1| RulA protein, putative [Pseudomonas fluorescens Pf-5] Length = 148 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 3/89 (3%) Query: 136 QDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSI 193 Q D ++L GD LI++ + ++ + ++L + Sbjct: 51 QIHGLLVDDDNLLGFGIYPGDRLIVDRSATPAVDQYLVVRAQGASEYSLRLLAPDPRGGL 110 Query: 194 DLMSLNCCYPVDTV-EMSDIEWIARILWA 221 L + P + ++ IE +LW Sbjct: 111 LLKAARPSIPSIVLDDLGSIEIWGVVLWV 139 >gi|11499701|ref|NP_070943.1| inosine monophosphate dehydrogenase (guaB-2) [Archaeoglobus fulgidus DSM 4304] gi|2648410|gb|AAB89133.1| inosine monophosphate dehydrogenase (guaB-2) [Archaeoglobus fulgidus DSM 4304] Length = 183 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 22/181 (12%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I R ++ L+ LA G+ + + + P + K+L E Sbjct: 8 IRRKRKKLGLSQKKLAELVGVSQPLIARIEAGKFD-----PKLSLVKKMLRVLEEIEGGR 62 Query: 73 LDLPFSDGRT-----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 ++ K + L S G V + Sbjct: 63 VEARVVMNSPVIFVSPSDSLKTVAELMTEKEISQLPVMENDKLVGGVTEADVVRAVLEKG 122 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL-------NSAIQVNCGDRLLIKPRTGDI 180 G +I+ + + P+ + + + + A+ V G++++ D+ Sbjct: 123 EGAESIRVR----EVMGDPF-PVVDPEESVNVVSKLLMEHPAVLVVQGEKVVGIITKQDV 177 Query: 181 V 181 + Sbjct: 178 M 178 >gi|28379166|ref|NP_786058.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254557296|ref|YP_003063713.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300768612|ref|ZP_07078511.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181362|ref|YP_003925490.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272004|emb|CAD64909.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254046223|gb|ACT63016.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300493919|gb|EFK29088.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046853|gb|ADN99396.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 106 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + +I + I + ++H +T LA ++ + + ++ +R G+ +S+ I Sbjct: 1 MLT--EIGKIIRQRRQQHGITIEQLAEQSNVSISLISRLER----GKVDNIKLQSLTAIA 54 Query: 63 AATNETICQLLDLPFSDGRT 82 N I Sbjct: 55 ETLNLKIADFFRDELLQSPN 74 >gi|84517224|ref|ZP_01004579.1| hypothetical protein SKA53_00255 [Loktanella vestfoldensis SKA53] gi|84508899|gb|EAQ05361.1| hypothetical protein SKA53_00255 [Loktanella vestfoldensis SKA53] Length = 97 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 1 MTSFSHK-KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 M+S + + KI + ++ + LA + G+ ++ + +R Sbjct: 1 MSSRTDEMKISIVLRAARSGLGISQADLASELGVSQSTITRCERGAGS 48 >gi|115525178|ref|YP_782089.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519125|gb|ABJ07109.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 472 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + + R+ E+ LT + LA K G+ + N+ + Sbjct: 6 LGVRLKRLREQQRLTQAALAAKLGISLSYLNQLENNQRP 44 >gi|99082324|ref|YP_614478.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038604|gb|ABF65216.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 187 Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 13/148 (8%), Positives = 41/148 (27%), Gaps = 12/148 (8%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + I + + L+ S A G+ + +R P+ +++KI Sbjct: 1 MSDESITLNLREIRAAAGLSLSRAAELTGVSKAMLGQIERGES-----SPTIATLWKIAK 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS------GVFPTGNKWNT 117 + + L++ + + + + +D + Sbjct: 56 GFHLPLTALIEESTRPSGRSGEVYRTVEFPGSIAVKIVFPYDPSLGAETFHVSLKPGQSH 115 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 +P ++ ++ + + Sbjct: 116 ESLPHDTGVTEEVFVLEGRMEVLR-DGD 142 >gi|332362047|gb|EGJ39849.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + + + LT AR G+ S ++ + STE I I N + Sbjct: 2 IGDNIKSLRKTNELTQPEFARIVGISRNSLSRYENGISP-----ISTELIDTICQKFNVS 56 Query: 69 ICQLLDLPFSDGRTT 83 ++ Sbjct: 57 YVDIVGEEKMLNPVE 71 >gi|327396677|dbj|BAK14098.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 203 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 8/124 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + N+T LA++A + + ++ +R R E + +L Sbjct: 19 NIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRV--LEQLRVVLNVPLT 76 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIR 124 + ++ ++ +E P G G + P+G + +P Sbjct: 77 AFLEQHEVMRPGAEHYVRRWRERPHF---QVGKHGISKEMLSPSGEHDIQFMYISIPPRT 133 Query: 125 SPHN 128 Sbjct: 134 RSEE 137 >gi|319651012|ref|ZP_08005147.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] gi|317397368|gb|EFV78071.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] Length = 149 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 5/81 (6%) Query: 21 NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80 + LA K + S +K + +PS E I K+ TI +LL Sbjct: 15 GWSQEDLAEKLFVSRQSVSKWENGQN-----YPSIEIIIKLSDLFGVTIDELLRSDEELT 69 Query: 81 RTTEKKEKEIPLLYFPPSGSG 101 K +++ Sbjct: 70 EKVIKDSRQLAYPRLKVFFDC 90 >gi|313609103|gb|EFR84807.1| ans operon transcriptional repressor, putative [Listeria monocytogenes FSL F2-208] Length = 131 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIF 59 M S+ + + E+ + + AR+ GL P+++ + R P E + Sbjct: 1 MPKLSN-----RLTLLREKQGWSKAETARRLGLSAPSTYGNWEYGI-----REPDLEMVT 50 Query: 60 KIL 62 +I Sbjct: 51 QIA 53 >gi|311069888|ref|YP_003974811.1| transcriptional repressor [Bacillus atrophaeus 1942] gi|310870405|gb|ADP33880.1| transcriptional repressor [Bacillus atrophaeus 1942] Length = 134 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 1/91 (1%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + E LT + LA +G+ ++ + G + + + + + L E + Sbjct: 4 GEQLRTLREERKLTVNQLAIYSGVSAAGISRIENGKR-GVPKPATIKKLAEALKIPYEDL 62 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + E L+ S Sbjct: 63 MKKAGYIEEIREARETYSTSCKLIEKAQSYQ 93 >gi|302063488|ref|ZP_07255029.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 129 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + H LA G + + ++ +R P+ + + K+ A + Sbjct: 19 IGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGT-----PNLDHLVKLCVALKIS 73 Query: 69 ICQLLDLPFSDGRTTEKK 86 +LL Sbjct: 74 PAELLPADGISSSREHLP 91 >gi|297195428|ref|ZP_06912826.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152779|gb|EDY63104.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 206 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 14/146 (9%), Positives = 41/146 (28%), Gaps = 11/146 (7%) Query: 1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M + + + I + + LA + L ++ ++ + R + Sbjct: 7 MLPMTQDNGELDSLVRKRIRALRVAQGWSLEELAARGRLSQSTLSRIENGH-----RRLA 61 Query: 55 TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + + A + ++ QL++ D + + L+ +P G T Sbjct: 62 LDQLVTLARALDTSLDQLVETATDDVVSNPMIDGAHGLMRWPIKAEPGMTVVRQRMTDPP 121 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140 + + + Sbjct: 122 PDNPARMRAHPGREWLVVLSGTAVLL 147 >gi|282865024|ref|ZP_06274077.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559947|gb|EFB65496.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 401 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + + E ++T LA+++G+ + K ++ E R + ++ + L Sbjct: 5 IGDRVRALREFRDITQDQLAQRSGVSVDTIRKLEQGVRE-SARINTLRNLARALD 58 >gi|326203738|ref|ZP_08193601.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986178|gb|EGD47011.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 169 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 15/38 (39%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 E I + + L+ LA K + + +K ++ Sbjct: 4 ENIKAIRKSKGLSQEELAIKLNVVRQTISKWEQGLSVP 41 >gi|227894470|ref|ZP_04012275.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] gi|227863629|gb|EEJ71050.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] Length = 325 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + I + +++NL+ LA + + + +K + P E I + Sbjct: 2 RLGQKIADLRKKNNLSQEDLAEEMNVSRQAVSKWESDQSI-----PDIEKIVNLSEFFG 55 >gi|169786953|ref|YP_001708765.1| putative HTH-like transcriptional regulator, phage-related [Acinetobacter baumannii AYE] gi|293611295|ref|ZP_06693592.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|169147114|emb|CAM84777.1| putative HTH-like transcriptional regulator, phage-related [Acinetobacter baumannii AYE] gi|292826306|gb|EFF84674.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 95 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 L+ + +A + G + ++ ++ I G+ PS ++ K AA + Sbjct: 38 ARRDAGLSQAQIAERMGTSVPAVSRLEKALITGKP-SPSIATLQKYAAAIGKH 89 >gi|149203901|ref|ZP_01880869.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142343|gb|EDM30388.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 133 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 18/46 (39%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + ER ++ S LA++ G+ + + E R S Sbjct: 18 GDRVTGARERSGMSQSDLAKRLGVKLKTLKAWENDLSEPRANKLSM 63 >gi|115377966|ref|ZP_01465149.1| putative transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|115365023|gb|EAU64075.1| putative transcriptional repressor [Stigmatella aurantiaca DW4/3-1] Length = 172 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 A+ + +R +T + A G+ P + + +R G+ PS ++ ++ Sbjct: 59 AALKQARKRAGMTQAEAAEGIGIAPEVYGRMERGGV-----LPSVPTLLRMCLILGSGPH 113 Query: 71 QLLDLPFSDGRTTEKKEKEIP 91 +L+ + + +P Sbjct: 114 ELMGFAEVESGQSAPGANTVP 134 >gi|30019187|ref|NP_830818.1| transcriptional repressor [Bacillus cereus ATCC 14579] gi|229108598|ref|ZP_04238210.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] gi|229126443|ref|ZP_04255458.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|229143741|ref|ZP_04272162.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|29894730|gb|AAP08019.1| Transcriptional repressor [Bacillus cereus ATCC 14579] gi|228639694|gb|EEK96103.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|228657023|gb|EEL12846.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|228674853|gb|EEL30085.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] Length = 149 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKIIEDSKQLAYPKW 84 >gi|21219819|ref|NP_625598.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289772984|ref|ZP_06532362.1| transcriptional regulatory protein [Streptomyces lividans TK24] gi|14575569|emb|CAC42859.1| putative transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289703183|gb|EFD70612.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 201 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 19/149 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS ++ KI A Sbjct: 20 QSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 74 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKW 115 +I LLD ++ + L + + G Sbjct: 75 VSITTLLDWEQGPAVRVVPADEAVRLWHTDAGSFSRLLAGVEAPGPLEMWEWRLMPGESS 134 Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144 + P + + + + Sbjct: 135 LSDPHPTGTVE---LVHVTSGELALTVDG 160 >gi|119356485|ref|YP_911129.1| XRE family transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119353834|gb|ABL64705.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides DSM 266] Length = 91 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 +I E + + +R LT LA K ++ ++ + + R S Sbjct: 30 RIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSEDIRLSTLS 76 >gi|324997834|ref|ZP_08118946.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 187 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + E + H L+ LA +AG+ S ++ + +R P+ +++ + Sbjct: 10 VGERLRSARTAHGLSVGALAARAGIGKGSLSELENG-----SRNPTLSTLYALANTLG 62 >gi|319412023|emb|CBY91956.1| putative transcriptional regulator [Streptococcus pneumoniae] Length = 158 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 16/39 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I + I + + H LT AR G+ S ++ + Sbjct: 2 IGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSS 40 >gi|301166078|emb|CBW25652.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 134 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 4/81 (4%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E+ L+ +A GL + ++ + GR PS E + +L Sbjct: 19 LKSLREKKKLSTREVAEALGLSGSYISQIEN----GRTNVPSGERMLSLLELYGIKPKYF 74 Query: 73 LDLPFSDGRTTEKKEKEIPLL 93 L + K LL Sbjct: 75 KQLVKEWKDGPNELVKAQELL 95 >gi|298292822|ref|YP_003694761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929333|gb|ADH90142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 72 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 7/71 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + R+ + +LT +A ++GL + +R R P+ ++++ Sbjct: 1 MDM--RKLVGRNFARLRQAKDLTQEQVAERSGLSQQYLSGLERG-----RRNPTIITLYE 53 Query: 61 ILAATNETICQ 71 + A + + + Sbjct: 54 LARALDVSHVE 64 >gi|296131246|ref|YP_003638496.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296023061|gb|ADG76297.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 78 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 16/46 (34%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53 ++ + + ER L+ LA G+D + + R Sbjct: 17 ELGAFLRHVRERRGLSQDALADALGIDRRYVYQIESGSPTLYTRRL 62 >gi|257051844|ref|YP_003129677.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256690607|gb|ACV10944.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 70 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + ++T LA G+ + N +R + PS E FK+ + I + Sbjct: 5 LKVWRAKEDITQGELADAVGVSRQTINALERERYD-----PSLELAFKLARHFDCAIEDI 59 Query: 73 LDLP 76 + Sbjct: 60 FEYD 63 >gi|162147757|ref|YP_001602218.1| HTH-type transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209542381|ref|YP_002274610.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786334|emb|CAP55916.1| putative HTH-type transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530058|gb|ACI49995.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 80 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I LT LA ++P + +R + PS E KI Sbjct: 3 NRIAMFRAERGLTRRALAEAVEVNPQTIGYLERGDYK-----PSLELALKICRVLG 53 >gi|160915853|ref|ZP_02078061.1| hypothetical protein EUBDOL_01875 [Eubacterium dolichum DSM 3991] gi|158432329|gb|EDP10618.1| hypothetical protein EUBDOL_01875 [Eubacterium dolichum DSM 3991] Length = 109 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + I N+T + LA+K + S + P E++ KI Sbjct: 2 QLGDIIQAQLTMKNMTQTDLAKKINIGQRSISNYVNNKS-----LPDLETLAKICNILEI 56 Query: 68 TIC 70 I Sbjct: 57 DIY 59 >gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] Length = 169 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 15/38 (39%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 E I + + L+ LA K + + +K ++ Sbjct: 4 ENIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVP 41 >gi|153009178|ref|YP_001370393.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561066|gb|ABS14564.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 76 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43 + + + + + + L+ LA +A +D T + +R Sbjct: 1 MEIREVLAQNLKALRQARGLSQEELAHRADIDRTYVSSLER 41 >gi|110802539|ref|YP_697891.1| signal peptidase I [Clostridium perfringens SM101] gi|169342351|ref|ZP_02863418.1| signal peptidase I [Clostridium perfringens C str. JGS1495] gi|110683040|gb|ABG86410.1| signal peptidase I [Clostridium perfringens SM101] gi|169299576|gb|EDS81639.1| signal peptidase I [Clostridium perfringens C str. JGS1495] Length = 176 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRT-GDIVAKVLISRRGRS 192 + K SM+P GD L + N GD ++ + + K +I G Sbjct: 34 LFKIKVPTGSMMPTVEIGDQLFVTKIYNPNNIKRGDIVVFNSDELKEPLLKRVIGLPGEH 93 Query: 193 IDLMSL 198 +++ S Sbjct: 94 VEIKSD 99 >gi|110636925|ref|YP_677132.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279606|gb|ABG57792.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 75 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 17/38 (44%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 K I + I + E L+ L+ ++G+ + + + Sbjct: 12 KTIGKKIKTLREAKGLSQYALSDESGISRSQIVRLENG 49 >gi|116495433|ref|YP_807167.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|89953886|gb|ABD83417.1| hypothetical protein Lcas063 [Lactobacillus casei ATCC 334] gi|116105583|gb|ABJ70725.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 81 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 8/80 (10%), Positives = 28/80 (35%), Gaps = 4/80 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ LA++ G+ + + + G+ + P+T +I ++ + Sbjct: 5 LRHYRREKEMSQLELAKQVGVTRLTISNIE----TGKTKDPATSITLRISEILGHSVDAI 60 Query: 73 LDLPFSDGRTTEKKEKEIPL 92 + ++E + Sbjct: 61 FGSENVNLDKHIPAQREEAV 80 >gi|194467259|ref|ZP_03073246.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454295|gb|EDX43192.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 203 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + T + +A K + + + ++ +P +++ KI + Sbjct: 5 NYIKKQRNNLGFTQAEIAEKLHVTRQTISNWEQGKS-----YPDLDTLVKISDIYKIS 57 >gi|78189240|ref|YP_379578.1| XRE family transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78171439|gb|ABB28535.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii CaD3] Length = 86 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 5/43 (11%), Positives = 18/43 (41%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 F+ + +A+ + L+ +A++ + + N+ + Sbjct: 1 MFTMDDLGQALRERRKLLGLSQLEVAKRNNISRITINRLENGR 43 >gi|29376415|ref|NP_815569.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227519230|ref|ZP_03949279.1| replication initiation protein [Enterococcus faecalis TX0104] gi|229545527|ref|ZP_04434252.1| replication initiation protein [Enterococcus faecalis TX1322] gi|255975566|ref|ZP_05426152.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256619367|ref|ZP_05476213.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256853409|ref|ZP_05558779.1| transcriptional regulator [Enterococcus faecalis T8] gi|256961616|ref|ZP_05565787.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256964832|ref|ZP_05569003.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257090178|ref|ZP_05584539.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|293384440|ref|ZP_06630320.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293389181|ref|ZP_06633645.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|307272916|ref|ZP_07554163.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307275669|ref|ZP_07556810.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307295992|ref|ZP_07575824.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312902671|ref|ZP_07761875.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312908394|ref|ZP_07767357.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312910535|ref|ZP_07769377.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29343878|gb|AAO81639.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227073317|gb|EEI11280.1| replication initiation protein [Enterococcus faecalis TX0104] gi|229309443|gb|EEN75430.1| replication initiation protein [Enterococcus faecalis TX1322] gi|255968438|gb|EET99060.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256598894|gb|EEU18070.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256711868|gb|EEU26906.1| transcriptional regulator [Enterococcus faecalis T8] gi|256952112|gb|EEU68744.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256955328|gb|EEU71960.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256998990|gb|EEU85510.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|291078223|gb|EFE15587.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291081486|gb|EFE18449.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|306496323|gb|EFM65902.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306507774|gb|EFM76903.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306510530|gb|EFM79553.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|310625614|gb|EFQ08897.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310633725|gb|EFQ17008.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311289083|gb|EFQ67639.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|315028935|gb|EFT40867.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315033315|gb|EFT45247.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315143537|gb|EFT87553.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315161496|gb|EFU05513.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315576934|gb|EFU89125.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 394 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + ++ + LA GL N+ + G+ ST+++ KI Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFNQLESFNPD 64 >gi|330819140|ref|YP_004348002.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327371135|gb|AEA62490.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 204 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 26 RVGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 80 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +L P S +IP L + + G ++ + Sbjct: 81 SLDELFAQPKSPETIRVDGLHDIPTLSGHDNQYQLRVWGPIELAG-RFEWYEL 132 >gi|325261368|ref|ZP_08128106.1| DNA-binding protein [Clostridium sp. D5] gi|324032822|gb|EGB94099.1| DNA-binding protein [Clostridium sp. D5] Length = 182 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + +++ LA G+ + +K + P TE++ ++ + Sbjct: 3 LGEKIQKHRKEKSMSQEELAALLGVSRQAVSKWELNDTI-----PDTENVIQLGKILEVS 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 + LL + Sbjct: 58 LDYLLKPERETPDEGGDTATAGNV 81 >gi|313575261|emb|CBI71200.1| hypothetical protein [uncultured bacterium] Length = 75 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%) Query: 9 IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I +I R+ H +T LA + G+ + ++ PS E+ F+I Sbjct: 6 ISNSIRRLRFDHGEMTQQELADRIGMTRQTIAAIEQNKY-----SPSLEAAFRIAEVFGV 60 Query: 68 TICQLLDLP 76 I + Sbjct: 61 PIGDVFQWK 69 >gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07] Length = 169 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E I + + L+ LA K + + +K ++ P ++ + I Sbjct: 4 ENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSV-----PDSDMLISISEVLETP 56 >gi|291548789|emb|CBL25051.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 294 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + ++ +A K + + +K ++ P + + ++ + + Sbjct: 2 INENIKHFRKTRGMSQEEMAVKLNVVRQTVSKWEKGLSI-----PDADVLIEMANLLDVS 56 Query: 69 ICQLLDLPFSDGRTTE 84 + QLL + S Sbjct: 57 VSQLLGIEESIHSNGN 72 >gi|261885316|ref|ZP_06009355.1| hypothetical protein CfetvA_09170 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 61 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 168 GDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI---EWIARIL 219 GD L R+GDI + +S+ L+S N Y +E++D+ + I R++ Sbjct: 1 GDILHAC-RSGDIFRTRVNEYPVTKSLTLISDNPKYEPIQIEVADLTHCKIIGRVV 55 >gi|188994791|ref|YP_001929043.1| hypothetical protein PGN_0927 [Porphyromonas gingivalis ATCC 33277] gi|188594471|dbj|BAG33446.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 67 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + E + + LA K G + N R R PS E++F+I + Sbjct: 1 MNRIKEVLEEKGIKQTWLAEKLGKSFSIVNAYVRN-----RRQPSLETLFQIAEILGVEV 55 Query: 70 CQ 71 + Sbjct: 56 KE 57 >gi|169335030|ref|ZP_02862223.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] gi|169257768|gb|EDS71734.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] Length = 310 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + + HNL+ LA K + + +K + +P + + + + + + Sbjct: 9 NLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTS-----YPEMDKLLILCDIFSLNMDE 63 >gi|116872704|ref|YP_849485.1| signal peptidase I [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741582|emb|CAK20706.1| signal peptidase I [Listeria welshimeri serovar 6b str. SLCC5334] Length = 180 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM+P D +I+N V+ D ++ + + G K +I G +++ + Sbjct: 34 ILVDGISMMPTLHNDDRVIINRFGHVDRFDVIVFREKDGKEYIKRVIGLPGDTVEYKAD 92 >gi|62736383|gb|AAX97501.1| putative transcriptional regulator [Lactobacillus reuteri] Length = 125 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 1/78 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI I +T LA L ++ +R +E R + I K L T E Sbjct: 3 KIGVNISHRRHELKMTQEELANATDLSTNYVSRLERGEVE-YIRALTLSKIAKGLKTTME 61 Query: 68 TICQLLDLPFSDGRTTEK 85 + + Sbjct: 62 KLIDGNTNQQHIRGHYQS 79 >gi|18309579|ref|NP_561513.1| signal peptidase type I [Clostridium perfringens str. 13] gi|110799433|ref|YP_695031.1| signal peptidase I [Clostridium perfringens ATCC 13124] gi|168206715|ref|ZP_02632720.1| signal peptidase I [Clostridium perfringens E str. JGS1987] gi|168211699|ref|ZP_02637324.1| signal peptidase I [Clostridium perfringens B str. ATCC 3626] gi|168214786|ref|ZP_02640411.1| signal peptidase I [Clostridium perfringens CPE str. F4969] gi|168217956|ref|ZP_02643581.1| signal peptidase I [Clostridium perfringens NCTC 8239] gi|182625738|ref|ZP_02953506.1| signal peptidase I [Clostridium perfringens D str. JGS1721] gi|18144256|dbj|BAB80303.1| probable signal peptidase type I [Clostridium perfringens str. 13] gi|110674080|gb|ABG83067.1| signal peptidase I [Clostridium perfringens ATCC 13124] gi|170661831|gb|EDT14514.1| signal peptidase I [Clostridium perfringens E str. JGS1987] gi|170710344|gb|EDT22526.1| signal peptidase I [Clostridium perfringens B str. ATCC 3626] gi|170713761|gb|EDT25943.1| signal peptidase I [Clostridium perfringens CPE str. F4969] gi|177909000|gb|EDT71482.1| signal peptidase I [Clostridium perfringens D str. JGS1721] gi|182379996|gb|EDT77475.1| signal peptidase I [Clostridium perfringens NCTC 8239] Length = 176 Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRT-GDIVAKVLISRRGRS 192 + K SM+P GD L + N GD ++ + + K +I G Sbjct: 34 LFKIKVPTGSMMPTVEIGDQLFVTKIYNPNNIKRGDIVVFNSDELKEPLLKRVIGLPGEH 93 Query: 193 IDLMSL 198 +++ S Sbjct: 94 VEIKSD 99 >gi|331092227|ref|ZP_08341055.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401659|gb|EGG81238.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] Length = 154 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 17/36 (47%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + I ++ N+T LA K G+ + +K + Sbjct: 6 IGKYISLKRKQKNMTQEQLAEKLGVSNKTISKWETG 41 >gi|331701810|ref|YP_004398769.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129153|gb|AEB73706.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 125 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + ER L+ LA+K + ++ + R P+ +++ + + + Sbjct: 3 LGQTISSLRERRGLSQVQLAKKLNIGTSTLGMWETD-----KRKPNPDALVSLANYFDVS 57 >gi|329117658|ref|ZP_08246375.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326908063|gb|EGE54977.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 331 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 5/52 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 +R+ + LA K + S +K + G P I ++ + Sbjct: 11 RKRNGWSQEQLAEKLDVSRQSVSKWE-----GAQSVPDLNRIIQMAEIFGVS 57 >gi|310827862|ref|YP_003960219.1| hypothetical protein ELI_2273 [Eubacterium limosum KIST612] gi|308739596|gb|ADO37256.1| hypothetical protein ELI_2273 [Eubacterium limosum KIST612] Length = 137 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 3/106 (2%) Query: 115 WNTVGVPEIRSPHNGIYAIQTQDT-RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173 T PE + + +D +D SM Y K DIL + G LI Sbjct: 26 IETPEPPEYTAETLPSKSRNGRDYIMVTLRDHSMFDRYYKDDILNVRLQETCCDGQDALI 85 Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARI 218 G + + + +I L LN Y +T I+ + + Sbjct: 86 LLENGSVRLRRVC-ITEDTIILKPLNTEFYEEETYPKDTIQILGVV 130 >gi|309792250|ref|ZP_07686722.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] gi|308225791|gb|EFO79547.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] Length = 181 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 49/174 (28%), Gaps = 16/174 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I R+ + LT ++ +GL P+ ++ +R + S ++ K+ + Sbjct: 3 LGQKIGRLRQERGLTLQEVSDGSGLTPSFLSRLERDKVN-----ISVANLRKLAQFFSVQ 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 + + S + L + + + P + + Sbjct: 58 MTHFFEGEDSQQAGQVLTVADRVRLSLDDAPVQVY---ALLPPNSDLEARLLEARPGSGQ 114 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182 ++ + Q + + +N GD L + Sbjct: 115 QGFSGRGSQMVLVLQGQL--------RYTLGDEEYTLNTGDTLFYRDDMAHSWI 160 >gi|257876621|ref|ZP_05656274.1| predicted protein [Enterococcus casseliflavus EC20] gi|257810787|gb|EEV39607.1| predicted protein [Enterococcus casseliflavus EC20] Length = 207 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 8/85 (9%), Positives = 28/85 (32%), Gaps = 5/85 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I ++ +T LA++ + ++ + + +P ++ ++ ++ +L Sbjct: 7 IRERRKQLGMTQEELAKELNVSRSAISNWEIGRN-----YPDITTLIELAQMYQVSLDEL 61 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPP 97 + K+ L Sbjct: 62 FYDDIDLVNKFAEDNKKKEQLKKVN 86 >gi|212691942|ref|ZP_03300070.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855] gi|212665544|gb|EEB26116.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855] Length = 142 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT S + I I R LT L ++ G+ +K + + ++I K Sbjct: 1 MTD-SIENIGLMIRNERLRKGLTQEELGKRIGVGKAQISKIESGKG------LTIKTITK 53 Query: 61 ILAATNET 68 +L A + Sbjct: 54 VLDALGMS 61 >gi|55820198|ref|YP_138640.1| transcriptional regulator, truncated [Streptococcus thermophilus LMG 18311] gi|55736183|gb|AAV59825.1| transcriptional regulator, putative, truncated [Streptococcus thermophilus LMG 18311] Length = 87 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 7/85 (8%) Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194 D SM P Y G + ++ G + K + + Sbjct: 2 AHDFASWVSGDSMEPKYHNGSVTLIRETGFDYDG-AVYAVVCNSQTYIKRVY-LEAEGLR 59 Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219 L Y + + + RI+ Sbjct: 60 LK-----YKDIFISYDEDPRVVRII 79 >gi|81429329|ref|YP_396330.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610972|emb|CAI56024.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 106 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + + LT L+++ G+ + + ++ +PS E++ I + + + Sbjct: 7 GERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLS-----YPSLETLVSICSILDTS 60 >gi|49475543|ref|YP_033584.1| hypothetical protein BH07730 [Bartonella henselae str. Houston-1] gi|49238349|emb|CAF27573.1| hypothetical protein BH07730 [Bartonella henselae str. Houston-1] Length = 82 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 1 MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 M++ K I + +++ E LA G+ P++ ++ G++R S + Sbjct: 1 MSNDIEKSIQQWLEKKLEERGHGAQIELAAYLGIHPSTISRMLNPYKNGKSRSISIGELV 60 Query: 60 KILAATNETICQ 71 KI + Q Sbjct: 61 KIAEFFKVSPPQ 72 >gi|15668446|ref|NP_247244.1| repressor protein YorfE [Methanocaldococcus jannaschii DSM 2661] gi|1590997|gb|AAB98257.1| repressor protein, putative (yorfE) [Methanocaldococcus jannaschii DSM 2661] Length = 79 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + HNLT LA+K G+ + ++ + PS + FKI Sbjct: 12 ETMKNKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYD-----PSLKLAFKIAKFFG 66 Query: 67 ETICQLLDLPF 77 I + Sbjct: 67 VKIEDIFIYED 77 >gi|150019804|ref|YP_001312058.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906269|gb|ABR37102.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 247 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 6/110 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I + + A+ G+ ++ + R P TE + KI A I Sbjct: 4 GNNIKKCRLDKGINQKEFAKILGIPVSTLANYENNH-----REPKTEILIKIADALLIPI 58 Query: 70 CQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 +LLD + + ++ + + F + +G N + Sbjct: 59 DELLDSETTSFSSNLITSMLQMEHITIVDASEEYGFKAISRDSGVNINYL 108 >gi|332798978|ref|YP_004460477.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696713|gb|AEE91170.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 85 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 5/81 (6%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + LT LA + G+ P++ + R P + I I Sbjct: 6 NRLAMLRNSKGLTQRDLANELGVSPSTIAMYEIGE-----RTPGLKMAKIIADFFGVGIE 60 Query: 71 QLLDLPFSDGRTTEKKEKEIP 91 + + + + ++ + Sbjct: 61 YIFFTAGAYEKEAKIRDSQHD 81 >gi|312966689|ref|ZP_07780909.1| HTH-type transcriptional regulator hipB [Escherichia coli 2362-75] gi|312288799|gb|EFR16699.1| HTH-type transcriptional regulator hipB [Escherichia coli 2362-75] Length = 72 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +++ T S LA+K G+ + + + S + FKIL + ++ Sbjct: 5 RQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQSLELSM 52 >gi|309775025|ref|ZP_07670039.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917210|gb|EFP62936.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 51 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 4/40 (10%), Positives = 17/40 (42%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 E + ++ + ++ LA + + + +K + + + Sbjct: 10 GEKLQKLRKESGISQEELASRLHVSRQAVSKWENEVSQTK 49 >gi|294815898|ref|ZP_06774541.1| Plasmid maintenance system antidote protein, XRE family [Streptomyces clavuligerus ATCC 27064] gi|294328497|gb|EFG10140.1| Plasmid maintenance system antidote protein, XRE family [Streptomyces clavuligerus ATCC 27064] Length = 139 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 1/57 (1%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + E + LAR+ G+ ++ ++ P E ++ + Sbjct: 35 RLRELREASGRSYGALARRVGVSASTLHRYCSGHTVPMEFAP-VERFARLCGCQGDD 90 >gi|293115820|ref|ZP_05793140.2| transcriptional regulator, Cro/CI family [Butyrivibrio crossotus DSM 2876] gi|292808334|gb|EFF67539.1| transcriptional regulator, Cro/CI family [Butyrivibrio crossotus DSM 2876] Length = 66 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 19/45 (42%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 E + ++ + LAR+ G+ + N+ + E R +T Sbjct: 7 EKVKKVRIEIGYSQEQLARELGVSFATINRWENGKSEPRQLALNT 51 >gi|256841360|ref|ZP_05546867.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737203|gb|EEU50530.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 109 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 17/37 (45%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 ++ EAI + NLT L + G+ ++ +R Sbjct: 40 RLGEAIKKARIEQNLTQEQLGERIGVKRAQISRLERG 76 >gi|254520429|ref|ZP_05132485.1| helix-turn-helix domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226914178|gb|EEH99379.1| helix-turn-helix domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 226 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 20/198 (10%), Positives = 54/198 (27%), Gaps = 10/198 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I + ++ LA+K G+ N+ + + S + Sbjct: 3 RVGEKIKEARLKSGMSQKLLAKKLGVAEKFINEIEMGRRVAQESLIDKASKILNADFNDV 62 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--------G 119 ++ + + + + + S V + Sbjct: 63 SMVVTDEALIEERKAMSDVKNKSSKGNIEKDEVWTNAFSSVLKNVPILDYSLKNNKGFKE 122 Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179 +P + G Q + + QD M L + ++ + + + G Sbjct: 123 LPIHSNKVEGY--SQDKVLYLEIQDDEMSGFRMLKGDLAFATLVKEVSNNGIFLVEYKGR 180 Query: 180 IVAKVLISRRGRSIDLMS 197 + + + + L+S Sbjct: 181 RAIRQIKNLGNSKVLLVS 198 >gi|239820730|ref|YP_002947915.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805583|gb|ACS22649.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 85 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 5/62 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + + ++ LA + G+ + + + S E + I Sbjct: 10 QLGALLKAARKEAGISQVKLAERLGISQSRMSHMELN-----PGSLSLEQLLAIFGVLGL 64 Query: 68 TI 69 + Sbjct: 65 EM 66 >gi|166033570|ref|ZP_02236399.1| hypothetical protein DORFOR_03296 [Dorea formicigenerans ATCC 27755] gi|218280987|ref|ZP_03487577.1| hypothetical protein EUBIFOR_00135 [Eubacterium biforme DSM 3989] gi|166026755|gb|EDR45512.1| hypothetical protein DORFOR_03296 [Dorea formicigenerans ATCC 27755] gi|218217758|gb|EEC91296.1| hypothetical protein EUBIFOR_00135 [Eubacterium biforme DSM 3989] Length = 100 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I ID + N+T L+ K G+ ++ + R PS + K+ Sbjct: 31 DIIQAMIDA-RVQQNMTQKDLSAKTGITQADISRIENGT-----RNPSLSMVKKLAHGLG 84 Query: 67 E 67 Sbjct: 85 M 85 >gi|319426396|gb|ADV54470.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] gi|319426403|gb|ADV54477.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 182 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 2/111 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + N+ +A + GL + +K +R E + + KIL + Sbjct: 8 IGSVLKDRRIALNIKQEDIAEQLGLTVQTVSKWERDLTEPKASQ--VTQLSKILKIAEKD 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 IC + I + P + + T + + Sbjct: 66 ICSGEIKHLKMDPLEFVRRVGILMNEVPQTELLIGMHEYINDTEGFIDMLA 116 >gi|118443353|ref|YP_878274.1| transcriptional regulator [Clostridium novyi NT] gi|118133809|gb|ABK60853.1| putative transcriptional regulator [Clostridium novyi NT] Length = 113 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 +E + ++ N+T L+ G+ ++ +K + R ES+ K+ A N ++ Sbjct: 4 YEKLKQLRISRNITTYELSELTGIPQSTISKMENG-----KRKIEAESLQKLADALNISV 58 Query: 70 CQLLD 74 + D Sbjct: 59 NEFFD 63 >gi|116255759|ref|YP_771592.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260407|emb|CAK03511.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 243 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 18/177 (10%), Positives = 47/177 (26%), Gaps = 22/177 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + ++ +T + LA G+ +K + I PS ++ + A Sbjct: 56 IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 110 Query: 69 ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + R + + +L + + G T Sbjct: 111 LTAFFRRFEEPRNAVFVKAGQGIELERRGTRAGHQYNVLGHIDNNTSGVIVEPYLITLTT 170 Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + + +Y ++ + + + + GD L ++ + Sbjct: 171 DSDIFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 224 >gi|148260500|ref|YP_001234627.1| hypothetical protein Acry_1500 [Acidiphilium cryptum JF-5] gi|146402181|gb|ABQ30708.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5] Length = 469 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 5/102 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S I + R+ + LT LA + G+ + N + R + + K+ Sbjct: 1 MSKPLIGRIVRRLRQEQGLTQQKLASRLGISTSYLNLIEHDQ-----RGVTAALLIKLTE 55 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 + L ++ PL+ Sbjct: 56 TLKVDLAALSGSDERQVEQALREAFADPLIGTESVPDSEAQM 97 >gi|322374490|ref|ZP_08049004.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300] gi|321279990|gb|EFX57029.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300] Length = 96 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 6/73 (8%), Positives = 23/73 (31%), Gaps = 10/73 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + E++ + + +A G + + + + S+ + Sbjct: 1 MQML-----GKQLKLFREQNGYSQNQIAEYLGTTRQTISNWENDKTI-----IDSHSLIR 50 Query: 61 ILAATNETICQLL 73 + ++ +L Sbjct: 51 LADFYQISLDELC 63 >gi|296393892|ref|YP_003658776.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181039|gb|ADG97945.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 178 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 5/107 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + E I E ++ LA++AG+ ++ +R R PS + + +I A Sbjct: 16 DVGEYIRTQRELAQVSLRQLAQRAGVSNPYLSQIERG-----LRNPSAQVMGQIAKALRL 70 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114 + + G + + SGG S Sbjct: 71 SAQAIDTQAEVLGPCQGFTPASEVRVQWGARESGGQNASAPVRADRG 117 >gi|289178728|gb|ADC85974.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 348 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 5/99 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + HN+T LA G+ S +K + +P + + + ++ Sbjct: 18 DNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKA-----YPEMDKLLMLCDMFGVSLD 72 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 L+ +G E L P G Sbjct: 73 DLVMGDVRNGIAMSANHVEDGLPKAPMPEMEGSALPQDI 111 >gi|283834661|ref|ZP_06354402.1| hypothetical protein CIT292_08868 [Citrobacter youngae ATCC 29220] gi|291069576|gb|EFE07685.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 182 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 13/139 (9%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI------- 61 I +++ R +R L+ + +AR+AG+ ++ ++ + PS E+++ + Sbjct: 8 IAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVALDIP 62 Query: 62 -LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + +G ++ + G D + T + + Sbjct: 63 FARLLEPQEQKTQVIRRGEGTKVVAEQAHYQAILLAACPPGARRDIYLLLTQPGADRISH 122 Query: 121 PEIRSPHNGIYAIQTQDTR 139 P I Q + Sbjct: 123 PHPPGSVEHIIVTQGKAMV 141 >gi|256848433|ref|ZP_05553875.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256714700|gb|EEU29679.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 211 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ LT S +A+K + + + ++ +P ++ +I + Sbjct: 7 IKMRRKKRGLTQSVVAKKLYVTRQTISNWEQGKS-----YPDLNTLVRISDFYQIS 57 >gi|297564957|ref|YP_003683929.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849406|gb|ADH62421.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 252 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 46/162 (28%), Gaps = 11/162 (6%) Query: 10 WEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 W + E+ L+ LA AG+ P+ K +R + R S + +L A + Sbjct: 26 WARLLVARREKLGLSREALALAAGISPSLIAKLERGTHD--IRDMSVGRLQALLRALHLP 83 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 LL G Y + + P + +T +P Sbjct: 84 SLDLLLGGSEGGDFPSTPGLTPLPYYPALAPACVG---EEAPGRSHLDTRLLPTRPGYAG 140 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 A D S +G +L++ G Sbjct: 141 FFLATLEGDAL-----CSEDLPLAEGSLLVVERKPARERGMV 177 >gi|199599583|ref|ZP_03212967.1| putative transcriptional regulator [Lactobacillus rhamnosus HN001] gi|199589527|gb|EDY97649.1| putative transcriptional regulator [Lactobacillus rhamnosus HN001] Length = 92 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%) Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ER LT LA +A + ++ + + S +++ KI A Sbjct: 41 RERAGLTQRELAERADVPQSTIARIEHGQNT------SFDTMSKIAFALG 84 >gi|183601514|ref|ZP_02962884.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219683947|ref|YP_002470330.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|241190987|ref|YP_002968381.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196393|ref|YP_002969948.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219120|gb|EDT89761.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219621597|gb|ACL29754.1| predicted transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|240249379|gb|ACS46319.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250947|gb|ACS47886.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793976|gb|ADG33511.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis V9] Length = 335 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 5/99 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + + HN+T LA G+ S +K + +P + + + ++ Sbjct: 5 DNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKA-----YPEMDKLLMLCDMFGVSLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109 L+ +G E L P G Sbjct: 60 DLVMGDVRNGIAMSANHVEDGLPKAPMPEMEGSALPQDI 98 >gi|163746251|ref|ZP_02153609.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] gi|161380136|gb|EDQ04547.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 207 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + N T AR+AGL ++ +K + + P+ +++ K+ Sbjct: 26 DLGARVRELRKARNWTLEQAARQAGLARSTLSKIENGLM-----SPTYDALKKLAVGLEI 80 Query: 68 TICQLLDLP 76 T+ QL P Sbjct: 81 TVPQLFTPP 89 >gi|50123201|ref|YP_052368.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|50123210|ref|YP_052377.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613727|emb|CAG77178.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613736|emb|CAG77187.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 132 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + E NL+ LA G+DP +N+ ++ P E++ I ++ Sbjct: 18 ERLRLLREARNLSQVRLAELLGVDPRVYNRWEKGVS-----APHLETVVNIADVLQVSMD 72 Query: 71 Q 71 + Sbjct: 73 E 73 >gi|84516199|ref|ZP_01003559.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84509895|gb|EAQ06352.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 207 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + + T AR+AGL ++ +K + + P+ +++ K+ + Sbjct: 26 DLGARVRELRKARDWTLEQAARQAGLARSTLSKIENGQM-----SPTYDALKKLAVGLDI 80 Query: 68 TICQLLDLP 76 ++ QL P Sbjct: 81 SVPQLFTPP 89 >gi|46907497|ref|YP_013886.1| signal peptidase I [Listeria monocytogenes serotype 4b str. F2365] gi|47093918|ref|ZP_00231657.1| signal peptidase I [Listeria monocytogenes str. 4b H7858] gi|226223873|ref|YP_002757980.1| signal peptidase I [Listeria monocytogenes Clip81459] gi|254824669|ref|ZP_05229670.1| signal peptidase I [Listeria monocytogenes FSL J1-194] gi|254932413|ref|ZP_05265772.1| signal peptidase I [Listeria monocytogenes HPB2262] gi|254993489|ref|ZP_05275679.1| signal peptidase I [Listeria monocytogenes FSL J2-064] gi|255520252|ref|ZP_05387489.1| signal peptidase I [Listeria monocytogenes FSL J1-175] gi|46880765|gb|AAT04063.1| signal peptidase I [Listeria monocytogenes serotype 4b str. F2365] gi|47017704|gb|EAL08498.1| signal peptidase I [Listeria monocytogenes str. 4b H7858] gi|225876335|emb|CAS05044.1| Putative signal peptidase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583970|gb|EFF96002.1| signal peptidase I [Listeria monocytogenes HPB2262] gi|293593908|gb|EFG01669.1| signal peptidase I [Listeria monocytogenes FSL J1-194] gi|328468560|gb|EGF39560.1| signal peptidase I [Listeria monocytogenes 1816] gi|332311715|gb|EGJ24810.1| Signal peptidase I [Listeria monocytogenes str. Scott A] Length = 189 Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSI 193 K + TSM+P Y+ GD + + + + D ++ +G+ K +I G I Sbjct: 43 VKVEGTSMVPTYQDGDRIFIEKISKPDRFDIIVFDEPPMIGSGEHFIKRVIGLPGDKI 100 >gi|331001960|ref|ZP_08325480.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411756|gb|EGG91161.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon 107 str. F0167] Length = 73 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 13/39 (33%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + +L+ LA G+ + N ++ R Sbjct: 6 LKSARAAKDLSQQQLAEIVGVSRQTINAIEKGDYNPTIR 44 >gi|329116195|ref|ZP_08244912.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906600|gb|EGE53514.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 128 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 12/111 (10%), Positives = 31/111 (27%), Gaps = 6/111 (5%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + ++ + + + LA K + + +K +R + P I +I T + Sbjct: 9 LVKLRKEKHFSQDELAEKLFISRQAISKWERGEVT-----PDLAKIEQIGEVFGVTT-EF 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123 L + T + + + + + P Sbjct: 63 LLFGKNFEDTWGVESFKYEEFQNIADEKKEERFDKLLDLFRSYWWLLFPFS 113 >gi|295400956|ref|ZP_06810931.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976958|gb|EFG52561.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 139 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 7/68 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +K+ E + + ++HN T LA+ + + +K + + P +S+ K Sbjct: 1 MKKM--RKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGEL-----LPDVQSLEK 53 Query: 61 ILAATNET 68 + + Sbjct: 54 LSNLYEVS 61 >gi|291617399|ref|YP_003520141.1| YdcN [Pantoea ananatis LMG 20103] gi|291152429|gb|ADD77013.1| YdcN [Pantoea ananatis LMG 20103] Length = 181 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 31/98 (31%), Gaps = 5/98 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + + + ++ + + + S A K G+ + +R P+ +++KI Sbjct: 5 HQYLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGES-----SPTVATLWKIATGF 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 N + ++ + P Sbjct: 60 NVPFSFFVHSGVHPAGEVTCYRQQNAQMAVTPLLPYDA 97 >gi|289596395|ref|YP_003483091.1| transcriptional regulator, XRE family [Aciduliprofundum boonei T469] gi|289534182|gb|ADD08529.1| transcriptional regulator, XRE family [Aciduliprofundum boonei T469] Length = 224 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 18/186 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E ++ LAR G+ + + + GR + P ++ K + A E Sbjct: 18 GATMRKWREMFGISQQELARYLGMSSSVISDYE----SGRRKSPGVGTVRKFVNALIEID 73 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +T +E + + FP S F + N + Sbjct: 74 EAKGGEKVKQLSSTYGEEAILDMGEFPYQISVEDFMDLIDA--KITNEGEFKRQIYGYTI 131 Query: 130 IYAIQTQDT-----RHKTQDTSMLPL------YRKGDILILNSAIQVNCGDRLLIKPRT- 177 + +++ + S+ Y ++ A + + + PR Sbjct: 132 LDSLKAILHYSSFDYLRVYGWSIDRALIFTGVYYGRSPMVAIRAHPLKPSAVVYVSPRKV 191 Query: 178 GDIVAK 183 ++ K Sbjct: 192 DELAIK 197 >gi|270299969|gb|ACZ68775.1| hypothetical protein SAP073A_008 [Staphylococcus aureus] Length = 72 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ EAI E + LA + S +K + +PS + + + Sbjct: 2 KLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKN-----YPSLDILIAMSDLFGI 56 Query: 68 T 68 + Sbjct: 57 S 57 >gi|229495100|ref|ZP_04388846.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229318031|gb|EEN83906.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 196 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 39/147 (26%), Gaps = 8/147 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + R LT GLA + GL + +K +R PS KI + + Sbjct: 3 AFLRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGIST-----PSIAVALKIARVLDADVG 57 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130 QL S + + P + + P+ + G Sbjct: 58 QLF--SDSMEGNAMTIVRAKDRVIDPANSVQSSVYDPIAPSLVGKAMQPFVVHPASVMGP 115 Query: 131 -YAIQTQDTRHKTQDTSMLPLYRKGDI 156 + T + S+ + Sbjct: 116 KFMDHTGEEFVFVHSGSVEFEIPGQTM 142 >gi|228925015|ref|ZP_04088145.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834678|gb|EEM80187.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 65 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + ++ LA K GL T ++ + + P+ + KI + Sbjct: 4 IAELRKEKLISQEKLAAKVGLSRTYISEIENN-----KKQPNVKLAIKIAKVLGTS 54 >gi|228956421|ref|ZP_04118232.1| Transcription regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803254|gb|EEM50062.1| Transcription regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 114 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I ++ ++ N T L +K G + R+PS ++I K+ Sbjct: 3 IGARIKKLRKQRNWTQEILGKKVGASSRVIGYYES-----EERFPSPDTIAKLSDTLE 55 >gi|228937919|ref|ZP_04100546.1| Transcription regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228962246|ref|ZP_04123679.1| Transcription regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228970800|ref|ZP_04131440.1| Transcription regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977375|ref|ZP_04137770.1| Transcription regulator [Bacillus thuringiensis Bt407] gi|228782352|gb|EEM30535.1| Transcription regulator [Bacillus thuringiensis Bt407] gi|228788925|gb|EEM36864.1| Transcription regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228797415|gb|EEM44595.1| Transcription regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228821710|gb|EEM67711.1| Transcription regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938399|gb|AEA14295.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 114 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I I ++ ++ N T L +K G + R+PS ++I K+ Sbjct: 3 IGARIKKLRKQRNWTQEILGKKVGASSRVIGYYES-----EERFPSPDTIAKLSDTLE 55 >gi|257386107|ref|YP_003175880.1| XRE family transcriptional regulator [Halomicrobium mukohataei DSM 12286] gi|257168414|gb|ACV46173.1| transcriptional regulator, XRE family [Halomicrobium mukohataei DSM 12286] Length = 298 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 20/53 (37%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + +LT S +A G+ ++ +K +E R + + ++ Sbjct: 20 LAEALRERDLTQSEVAELLGISQSAVSKYAHGEVERNERLLENDRLAALIEEL 72 >gi|255658327|ref|ZP_05403736.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849650|gb|EEX69657.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 65 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + + +++ +AR+ T+ + + R P E++ + A Sbjct: 4 ILEQLIQRRKELHISQKEVARRMKTGQTTIARIETGA-----RSPKLETVERFAQALGCD 58 >gi|210621225|ref|ZP_03292531.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] gi|210154836|gb|EEA85842.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] Length = 118 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 5/87 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + + L+ L + G+ + +K + +P + + + N ++ Sbjct: 5 EKLIELRKAKGLSQEELGNELGVSRQTISKWELGQS-----YPDFQKLVLLSDFFNISLD 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97 +L+ D + E + Sbjct: 60 KLIKDIDLDDVRENNQSDEKVSKMYED 86 >gi|197118213|ref|YP_002138640.1| XRE family helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197087573|gb|ACH38844.1| helix-turn-helix transcriptional regulator, XRE family [Geobacter bemidjiensis Bem] Length = 103 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 7 KKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + A+D + + LT +A K G+ S + + PS E + K A Sbjct: 31 EDEFAALDVLLKARKAAGLTQEQVAAKMGVSQPSLARVEASLCS-HRHSPSLEMLRKYAA 89 Query: 64 ATNE 67 A N Sbjct: 90 AVNC 93 >gi|256005740|ref|ZP_05430695.1| signal peptidase I [Clostridium thermocellum DSM 2360] gi|281417070|ref|ZP_06248090.1| signal peptidase I [Clostridium thermocellum JW20] gi|255990313|gb|EEU00440.1| signal peptidase I [Clostridium thermocellum DSM 2360] gi|281408472|gb|EFB38730.1| signal peptidase I [Clostridium thermocellum JW20] gi|316940892|gb|ADU74926.1| signal peptidase I [Clostridium thermocellum DSM 1313] Length = 188 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 141 KTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGD--IVAKVLISRRGRSID 194 SM GD +I + + GD ++ + + + K +I +++ Sbjct: 51 YVPTGSMENTIMPGDRIIASRIHYYFSEPKRGDIVVFRYPDNEEVLYVKRIIGLPNETVE 110 Query: 195 LM 196 + Sbjct: 111 IK 112 >gi|183597719|ref|ZP_02959212.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC 25827] gi|188022996|gb|EDU61036.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC 25827] Length = 93 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 14/41 (34%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I + R LT S LA+K + ++ + Sbjct: 11 NNIGRMLKSYRRRTGLTGSELAKKINVSQQQISRYENGINN 51 >gi|153816351|ref|ZP_01969019.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|317501012|ref|ZP_07959220.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089033|ref|ZP_08337939.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846312|gb|EDK23230.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|316897590|gb|EFV19653.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|330406233|gb|EGG85752.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 8/137 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E I ++ E ++ A+ + + + ++ +P +++ KI + Sbjct: 2 KIGETILKLREEKKMSQEEFAQYYHVTRQTISNWEKEKN-----YPDLQTLVKISDESGV 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIR 124 + +L FS + +KK + + + + + S N + + Sbjct: 57 PLDSMLKDNFSMVQEIDKKVRHLKIFKIGTIVVLAIVILVSAYIGIQNGKQDHLVRTYED 116 Query: 125 SPHNGIYAIQTQDTRHK 141 + + + Sbjct: 117 KLEELGFEQEGNNYCLT 133 >gi|150021356|ref|YP_001306710.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793877|gb|ABR31325.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 72 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E+ LT LA+ G+ + + + + PS + ++ A ++ + Sbjct: 3 LRELREKKMLTQQQLAKLIGVTQRTISAYEIGQAK-----PSLDVAIRLAKALGVSVEDV 57 Query: 73 L 73 Sbjct: 58 F 58 >gi|147673117|ref|YP_001218249.1| hypothetical protein VC0395_A2349 [Vibrio cholerae O395] gi|262166988|ref|ZP_06034706.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] gi|146315000|gb|ABQ19539.1| conserved domain protein [Vibrio cholerae O395] gi|227011827|gb|ACP08037.1| hypothetical protein VC395_0008 [Vibrio cholerae O395] gi|262024572|gb|EEY43255.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] Length = 69 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I +M + LT LA A +D + + +R + + E +++I Sbjct: 9 VGKRIAKMRKSKGLTQDKLALLAEIDRSYVGRIERGEVN-----ITVEKLYQIADTLGCD 63 Query: 69 ICQ 71 + + Sbjct: 64 VKE 66 >gi|125972871|ref|YP_001036781.1| signal peptidase I [Clostridium thermocellum ATCC 27405] gi|125713096|gb|ABN51588.1| signal peptidase I, Serine peptidase, MEROPS family S26A [Clostridium thermocellum ATCC 27405] Length = 193 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 141 KTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGD--IVAKVLISRRGRSID 194 SM GD +I + + GD ++ + + + K +I +++ Sbjct: 56 YVPTGSMENTIMPGDRIIASRIHYYFSEPKRGDIVVFRYPDNEEVLYVKRIIGLPNETVE 115 Query: 195 LM 196 + Sbjct: 116 IK 117 >gi|333026159|ref|ZP_08454223.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332746011|gb|EGJ76452.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 400 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 I R+ + +LT LA AGL ++ K+++ I Sbjct: 18 RIKRLRQERHLTQKALADLAGLSYSTVTKTEKALIPLTPH 57 >gi|318061994|ref|ZP_07980715.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318080087|ref|ZP_07987419.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 400 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 I R+ + +LT LA AGL ++ K+++ I Sbjct: 18 RIKRLRQERHLTQKALADLAGLSYSTVTKTEKALIPLTPH 57 >gi|315033825|gb|EFT45757.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0017] Length = 65 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + E T A+K G+ T+++ ++ R P+ ++ K+ N + Sbjct: 8 LKIKREELGYTQESFAKKVGIAKTTYSSYEQGH-----RNPTVQTAKKMAKILNVSW 59 >gi|307285420|ref|ZP_07565559.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306502644|gb|EFM71909.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|315162230|gb|EFU06247.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315573911|gb|EFU86102.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315580395|gb|EFU92586.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] Length = 75 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + +T LA+K G+ + + R ++ KI A T+ + Sbjct: 6 IYDLRREKRMTQKELAKKTGITERTIINYEN--SIDALRNAKYSTVEKIATALGVTVDDI 63 Query: 73 L 73 Sbjct: 64 F 64 >gi|253773505|ref|YP_003036336.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161582|ref|YP_003044690.1| phage N15 gp48-like protein [Escherichia coli B str. REL606] gi|300917792|ref|ZP_07134436.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] gi|300929017|ref|ZP_07144514.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 187-1] gi|242377274|emb|CAQ32015.1| ybl67 [Escherichia coli BL21(DE3)] gi|253324549|gb|ACT29151.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973483|gb|ACT39154.1| phage N15 gp48-like protein [Escherichia coli B str. REL606] gi|253977694|gb|ACT43364.1| phage N15 gp48-like protein [Escherichia coli BL21(DE3)] gi|300414980|gb|EFJ98290.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] gi|300463006|gb|EFK26499.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 187-1] gi|323937357|gb|EGB33635.1| helix-turn-helix protein [Escherichia coli E1520] gi|323962302|gb|EGB57891.1| helix-turn-helix protein [Escherichia coli H489] gi|323973719|gb|EGB68894.1| helix-turn-helix protein [Escherichia coli TA007] Length = 94 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 +++ + M +R LT + +A + G+ + ++ +R S ++ + AA Sbjct: 30 QEEELRAVLIEMKKRAGLTSTEIAARMGVSQPAVSRLERNVSSA-----SLTTLQRYAAA 84 Query: 65 TNET 68 Sbjct: 85 CGMH 88 >gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 169 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 15/38 (39%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 E I + + L+ LA + + + +K ++ Sbjct: 4 ENIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVP 41 >gi|218233356|ref|YP_002365796.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] gi|218161313|gb|ACK61305.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] Length = 149 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K++ + Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84 >gi|166032548|ref|ZP_02235377.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC 27755] gi|166026905|gb|EDR45662.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC 27755] Length = 150 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + E NLT LA K + + + + +R P + K+ + ++ Sbjct: 5 DNIKKFREEKNLTQQQLADKLYVSRQTVCRWENG-----SRCPDLITAKKLALELDVSMD 59 Query: 71 Q 71 + Sbjct: 60 E 60 >gi|119489478|ref|ZP_01622239.1| hypothetical protein L8106_27891 [Lyngbya sp. PCC 8106] gi|119454557|gb|EAW35704.1| hypothetical protein L8106_27891 [Lyngbya sp. PCC 8106] Length = 76 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 I + +R L+ L K G+ + N + + Sbjct: 12 IRTLRQRLGLSQRKLGEKLGVVFQTVNNWENGRTKPTR 49 >gi|170735407|ref|YP_001774521.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821445|gb|ACA96026.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 81 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 13/77 (16%) Query: 1 MTSFSHKK--------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 M S K+ I + ++ LA G+D + + +R R Sbjct: 1 MQRVSGKRDDAGHLAAIGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQ-----RN 55 Query: 53 PSTESIFKILAATNETI 69 + ++ +I A N + Sbjct: 56 LTILNLIRIADALNISP 72 >gi|295699461|ref|YP_003607354.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438674|gb|ADG17843.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 189 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 15/145 (10%) Query: 1 MTSFSHKKIWEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56 M+ S + +AI E N + + LA ++G+ +K +R P+ Sbjct: 1 MSETSAIDLTQAISARVKTEREARNWSLAELAERSGVSKAMISKIERGEA-----SPTAT 55 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 + ++ A T+ LL L G + + + PTG Sbjct: 56 VLGRLSGAFGLTLSTLLALAEQTGERLVRHADQSLWEDPETGYTRRRISP---PTGGVLE 112 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHK 141 + + P + + Sbjct: 113 LLEIE---LPIGVRVPYPSDAFVFQ 134 >gi|257065284|ref|YP_003144956.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792937|gb|ACV23607.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 200 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + + +LT LA + T+ +K + +PS +S+ ++ + TI Sbjct: 4 GEKLQELRKARSLTQEQLAEALYVSRTAVSKWESGRG-----YPSIDSLKEVSRFFSVTI 58 Query: 70 CQLLDLPF 77 +L+ Sbjct: 59 DELISPDE 66 >gi|238854642|ref|ZP_04644972.1| signal peptidase I [Lactobacillus jensenii 269-3] gi|260664415|ref|ZP_05865267.1| signal peptidase I [Lactobacillus jensenii SJ-7A-US] gi|282932967|ref|ZP_06338364.1| signal peptidase I [Lactobacillus jensenii 208-1] gi|238832432|gb|EEQ24739.1| signal peptidase I [Lactobacillus jensenii 269-3] gi|260561480|gb|EEX27452.1| signal peptidase I [Lactobacillus jensenii SJ-7A-US] gi|281303002|gb|EFA95207.1| signal peptidase I [Lactobacillus jensenii 208-1] Length = 192 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSID 194 SM P + GD +I + GD +++ G + K ++ G SI Sbjct: 45 TVSGPSMQPTFENGDRIIAVRHTSLKRGDIVILNAPDEPGALYIKRIVGMPGDSIT 100 >gi|218752098|ref|ZP_03530894.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] Length = 93 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 7/92 (7%), Positives = 24/92 (26%), Gaps = 5/92 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + + LA+ + P+ N+ + R + + +I Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100 + ++ L Sbjct: 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPH 92 >gi|218532713|ref|YP_002423529.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525016|gb|ACK85601.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 135 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 2/63 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + ++ + L G+ K + S + ++L T Sbjct: 18 VGERIKVLRKSKGISQTALGSALGVTFQQIQKYENGVNRVGASRLS--EVARVLEVPVST 75 Query: 69 ICQ 71 + Sbjct: 76 FFE 78 >gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 126 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 5/105 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S +I AI R +L+ LA + + + + + + E+I + Sbjct: 7 MSSSEIGAAIRRRRHELSLSQEELAARLEVSYQQIQRYESGKNK-----LNVENIQLVAD 61 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 A + + + + E+ P + D + Sbjct: 62 ALSVPVGYFFQVVHQETVIESTIEQPCPKEQELLAQFRSIRDDQM 106 >gi|53748387|emb|CAH58723.1| hypothetical protein [Clostridium sp. RKD] Length = 114 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I E I R+ + +T LA G+ + +K + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFIGISTAAVSKWESGTS 43 >gi|85715308|ref|ZP_01046291.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85697954|gb|EAQ35828.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 483 Score = 42.4 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + R+ ++ L+ + LA G+ P+ N +R R + + + ++ A + Sbjct: 11 VGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQ-----RPVTAQILLRLAEAYDLD 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92 + L + PL Sbjct: 66 LRDLATADEDRFFAELNEVFSDPL 89 >gi|331090732|ref|ZP_08339579.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399840|gb|EGG79499.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] Length = 150 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + I + E NLT LA K + + + + +R P + K+ + ++ Sbjct: 5 DNIKKFREEKNLTQQQLADKLYVSRQTICRWENG-----SRCPDLITAKKLALELDVSMD 59 Query: 71 Q 71 + Sbjct: 60 E 60 >gi|325569676|ref|ZP_08145723.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] gi|325157232|gb|EGC69397.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] Length = 396 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I R + +T LA + S +K + +P S+ + A + + Sbjct: 5 IGEEIARRRKHRGVTQQELAAFMNVSKASVSKWETGQT-----YPDITSLPLLAAYFDCS 59 Query: 69 ICQ 71 + + Sbjct: 60 VDE 62 >gi|325289095|ref|YP_004265276.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964496|gb|ADY55275.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 272 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 11/103 (10%), Positives = 26/103 (25%), Gaps = 2/103 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + T LA+K + +K + + L + Sbjct: 4 LVQNISKYRKMRGFTQEELAQKLNRSSQAISKWETGQSSPDISL--LPDLAFALGTDINS 61 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111 + + ++ +E PS P Sbjct: 62 LMGYVYDKKKITIYEDEYRQEDYYWGLKPSPMCYRVMEMAPPV 104 >gi|323693566|ref|ZP_08107769.1| DNA-binding protein [Clostridium symbiosum WAL-14673] gi|323502374|gb|EGB18233.1| DNA-binding protein [Clostridium symbiosum WAL-14673] Length = 250 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 5/38 (13%), Positives = 14/38 (36%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 E + + ++ + L K G+ + +K + Sbjct: 5 EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTP 42 >gi|323485059|ref|ZP_08090412.1| DNA-binding protein [Clostridium symbiosum WAL-14163] gi|323401615|gb|EGA93960.1| DNA-binding protein [Clostridium symbiosum WAL-14163] Length = 250 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 5/38 (13%), Positives = 14/38 (36%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 E + + ++ + L K G+ + +K + Sbjct: 5 EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTP 42 >gi|296119241|ref|ZP_06837810.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] gi|295967762|gb|EFG81018.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] Length = 72 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 5/55 (9%), Positives = 15/55 (27%), Gaps = 2/55 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + ++ L+ LA G+ + ++ + P + Sbjct: 3 NNLKAFRDKAGLSQQKLADALGVSRQTIISIEKGRYD--PSLPLAFQLAAKFECL 55 >gi|284031267|ref|YP_003381198.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283810560|gb|ADB32399.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 397 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + E I +R ++ LA G+ + ++ +R G +R + + +L Sbjct: 3 VGERIGAYRKRRGMSQDALAGLIGMSRSWLSQVERGIR-GVDRLSTLNDLATVLR 56 >gi|258541456|ref|YP_003186889.1| XRE family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632534|dbj|BAH98509.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01] gi|256635591|dbj|BAI01560.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-03] gi|256638646|dbj|BAI04608.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-07] gi|256641700|dbj|BAI07655.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-22] gi|256644755|dbj|BAI10703.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-26] gi|256647810|dbj|BAI13751.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-32] gi|256650863|dbj|BAI16797.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653854|dbj|BAI19781.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-12] Length = 471 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + ++ +R LT + LA + P+ N+ +R R + K+ + T Sbjct: 11 GPRLRQLRQRETLTQANLADMLDISPSYLNQLERNH-----RPVPHPLLQKLCERFDLTP 65 Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92 + + ++ P+ Sbjct: 66 AWFSNTKEAHTVQAMRETMADPV 88 >gi|242239429|ref|YP_002987610.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242131486|gb|ACS85788.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 131 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 ++ + I + + LT LA+ + + + Sbjct: 15 ELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRR 54 >gi|213028985|ref|ZP_03343432.1| hypothetical protein Salmonelentericaenterica_45075 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 89 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I ++ R ++ L+ + +AR+AG+ ++ ++ + PS E+++ + A Sbjct: 30 IARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVAL 81 >gi|126730936|ref|ZP_01746745.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126708652|gb|EBA07709.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 130 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E ++ LA+ G+ T+ + + E R + IL + Sbjct: 14 LGDRLAAAREAQGMSQETLAKNLGIKLTTLERWEDDLSE--PRANKLSMVAGILNVSMVW 71 >gi|91710591|gb|ABE50519.1| N-acetylglutamate synthase / N-acetylglutamate kinase [Methylobacillus flagellatus KT] Length = 521 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 5/132 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + AI + + N+T LARK + + ++ +R + S + K+ A + T Sbjct: 3 LGNAIRKRRKALNMTLQELARKVNANSGNLSRIERGA-----QGVSETMLRKLCTALDCT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L ++ + + + G + + Sbjct: 58 AAYLYAQSDAESGHSTNTSRLTLHQPQEFVRWFRSAAPYIHAFGGRTFVIAFGGEVVDDG 117 Query: 129 GIYAIQTQDTRH 140 A+ Sbjct: 118 QFVALSHDLNLL 129 >gi|28210772|ref|NP_781716.1| DNA-binding protein [Clostridium tetani E88] gi|28203210|gb|AAO35653.1| DNA-binding protein [Clostridium tetani E88] Length = 150 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 4/73 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I+++ + T L+ K+G+ + +K + P E++ + T+ Sbjct: 6 LEIIEKLKKEKGFTSKQLSEKSGVPKGTLDKILNGTT----KDPKLETLKSLSRVLGCTL 61 Query: 70 CQLLDLPFSDGRT 82 D ++ Sbjct: 62 DDFDDKTETEMEN 74 >gi|83953755|ref|ZP_00962476.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841700|gb|EAP80869.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 236 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + N T A +AGL ++ +K + + P+ E++ K+ Sbjct: 55 DLGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQM-----SPTYEALKKLAVGLEI 109 Query: 68 TICQLLDLPFS 78 ++ QL P Sbjct: 110 SVPQLFTPPSP 120 >gi|332158829|ref|YP_004424108.1| hypothetical protein PNA2_1189 [Pyrococcus sp. NA2] gi|331034292|gb|AEC52104.1| hypothetical protein PNA2_1189 [Pyrococcus sp. NA2] Length = 329 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 13/117 (11%) Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170 + + + I P + + SM P + D+ +N + + GD Sbjct: 3 ASDIVFDLLLLGIFVPSIAGFIMGRPVFVSYAYSDSMTPTINRWDVFFINPLSKGDVGDI 62 Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN--------CCYPVDTVEMSDIEWIARIL 219 ++ +G + + N P + + I +++ Sbjct: 63 VV-FNLSGKWTVHRIYAITSEGYITKGDNNVATDQQDDKNPPIKRD----QIIGKVI 114 >gi|329928143|ref|ZP_08282089.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|328938020|gb|EGG34419.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 185 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 36/192 (18%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + E+ L+ +A G+ T + +R PS +++KI + Sbjct: 8 LANNLKLLREQRKLSLDKVAEMTGISKTMLGQIERGES-----SPSITTVWKIANGLKLS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128 L++ P S ++E + + + + R Sbjct: 63 FSSLINEPHSGTVVVSREEVQALVEDNGRIR--------------IYPYFPYEDGRRFEM 108 Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188 ++ S + I V G+ + + + K Sbjct: 109 YSLEMEHGGYL------SAEAHIEGTEEFI-----TVFDGEVTI-RVDQEEYTVK----- 151 Query: 189 RGRSIDLMSLNC 200 G SI + Sbjct: 152 AGESIRFKADKP 163 >gi|319936892|ref|ZP_08011303.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] gi|319807991|gb|EFW04566.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] Length = 375 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 5/89 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I +R LT LA K + + ++ + E P +++ + T Sbjct: 3 LGKRIQYYRKRKQLTQEELAEKLMVSRQAISRWESDNNE-----PDVKTLLILANIFEIT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + +L+ + E + Sbjct: 58 VDELVRENEVNIDNQNIIENGSEDIIIHQ 86 >gi|317051880|ref|YP_004112996.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316946964|gb|ADU66440.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 71 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 18/42 (42%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + E + + ++ L+ LA + G+ ++ N+ + Sbjct: 6 ENFAETVKEVRQQLGLSQEELAHELGVSFSTINRWENSKTVP 47 >gi|253577026|ref|ZP_04854349.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843636|gb|EES71661.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 143 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + ++ + H T L K L S + + R P +++ KI N + Sbjct: 6 RLKQLRKEHKWTQEELGAKLNLTKVSISGYENGN-----RTPDMDTLIKISNVFNVS 57 >gi|229490099|ref|ZP_04383947.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229322975|gb|EEN88748.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 203 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + + LT GL+ G+ ++ ++ + R P+ + + + Sbjct: 14 DIGPRLRTLRRDRGLTLEGLSEATGVSVSALSRLESG-----KRRPTLDLLLPLAR 64 >gi|311739935|ref|ZP_07713769.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305008|gb|EFQ81077.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 437 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 I + ++ LT +A++ GL + N+ + Sbjct: 7 GARIHALRKQRGLTQVAMAKQLGLSTSYLNQLENDQRP 44 >gi|157311139|ref|YP_001469184.1| phage repressor [Streptococcus phage P9] gi|119104288|gb|ABL61033.1| phage repressor [Streptococcus phage P9] Length = 119 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT F +++ I+ +A++ ++ +A GL K + +T+ I K Sbjct: 1 MTMF---EVYSRIEALAKKRGVSLQKVATDIGLSENYIYNLKS------KKTANTDPIEK 51 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118 I N + L +D + + FF G + + Sbjct: 52 IANYFNVST--DYLLGRTDNPKIAQDGHASVAIDLKKDAEETFFFDGHELNDEDIDLI 107 >gi|148378839|ref|YP_001253380.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932486|ref|YP_001383224.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934537|ref|YP_001386771.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288323|emb|CAL82400.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928530|gb|ABS34030.1| HTH domain protein [Clostridium botulinum A str. ATCC 19397] gi|152930451|gb|ABS35950.1| HTH domain protein [Clostridium botulinum A str. Hall] Length = 373 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 60/215 (27%), Gaps = 19/215 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M I + I + +T LA G+ S +K + +P + + Sbjct: 1 MRDL---NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSS-----YPDIVLLPE 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + N ++ +LL + KK F + ++ Sbjct: 53 LATYFNISVDELLGYSPQLTKEDIKKIYSKLSHEFAVRPFDEAMEQCNKLIKKYYSCFPF 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 ++ ++ ++ + + + + + + T + Sbjct: 113 LLSIIQLLLNHSN-------LIKNDAIKKEIFQQCVFLSRRIKEESENISYIKNANTMEA 165 Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215 +A++ + I L+ N P D+ I Sbjct: 166 LAEMALGNSEEVIRLL-DNKLDP---YRGDDVILI 196 >gi|29833583|ref|NP_828217.1| transcriptional regulatory protein [Streptomyces avermitilis MA-4680] gi|29610707|dbj|BAC74752.1| putative transcriptional regulatory protein [Streptomyces avermitilis MA-4680] Length = 201 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 6/124 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +AG+ + ++ PS ++ KI A Sbjct: 20 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTN-----PSIGTVVKIGDALG 74 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125 ++ LLD ++ + L + P W+ + +P S Sbjct: 75 VSVTTLLDYEQGPKVRIVPADQAVRLWHTDAGSYNRLLAGTEAPGPLEMWDWLLMPGEGS 134 Query: 126 PHNG 129 P + Sbjct: 135 PSDP 138 >gi|78357543|ref|YP_388992.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219948|gb|ABB39297.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 69 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 18/42 (42%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + E + + ++ L+ LA + G+ ++ N+ + Sbjct: 6 ENFAETVKEVRQQLGLSQEELAHELGVSFSTINRWENSKTVP 47 >gi|83942534|ref|ZP_00954995.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83846627|gb|EAP84503.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 229 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + N T A +AGL ++ +K + + P+ E++ K+ Sbjct: 48 DLGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQM-----SPTYEALKKLAVGLEI 102 Query: 68 TICQLLDLPF 77 ++ QL P Sbjct: 103 SVPQLFTPPS 112 >gi|332663821|ref|YP_004446609.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332332635|gb|AEE49736.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 95 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 S + + E + + +T LA A + + K +R PS E + K+ Sbjct: 27 MSIQHLGEYLKNRRKALGITQPHLAELAQISTNTLYKLERGQGN-----PSLEVLNKLTE 81 Query: 64 ATN 66 Sbjct: 82 VLG 84 >gi|326445242|ref|ZP_08219976.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 305 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 ++ + + L+ AG+ + ++ +R +G RW + + ++ Sbjct: 22 QLGYRLLELRNASGLSAEQAGEAAGVSKATVSRYERG--KGNVRWNQVDQLCRV 73 >gi|317407356|gb|EFV87322.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 63 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + + LA + + + N + + PS F I + Sbjct: 3 NRIRDLRAERGWSQAALAEQLNVSRQTVNAIETGRYD-----PSLPLAFAIARVFGQP 55 >gi|317490219|ref|ZP_07948707.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] gi|316910713|gb|EFV32334.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + + + + + E NLT LA G+ + K + R + + + K Sbjct: 1 MTRATRILLGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGN-----RNATIDFMEK 55 Query: 61 ILAATN 66 + Sbjct: 56 VALGLG 61 >gi|303246058|ref|ZP_07332339.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492454|gb|EFL52325.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + ++T LA +GL + +R R PS SI ++ A Sbjct: 5 QDLFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERG-----RRNPSLTSIEQLAKAL 59 Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97 + + +L L E + I + Sbjct: 60 DIPMAELFSLEEFRLAPEELRAILIRQIETAD 91 >gi|299146496|ref|ZP_07039564.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|298516987|gb|EFI40868.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 101 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I+ ++ +T + LAR+ G D + ++ + E P + ++I+ A Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTE-----PKVSTFYRIMNALGC 93 >gi|259502004|ref|ZP_05744906.1| XRE family transcriptional regulator [Lactobacillus antri DSM 16041] gi|259170063|gb|EEW54558.1| XRE family transcriptional regulator [Lactobacillus antri DSM 16041] Length = 73 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +D + +T LA++ G+ P + + K G+ R E++ K+ N Sbjct: 2 ITVNLDVLLAERKMTSKTLAQRIGITPANLSILK----TGKARGIRFETLAKLCHELNCQ 57 Query: 69 ICQLLDLPF 77 +L+ Sbjct: 58 PGDILEYQE 66 >gi|257484266|ref|ZP_05638307.1| hypothetical protein PsyrptA_13492 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008336|gb|EGH88392.1| hypothetical protein PSYTB_01194 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 133 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 8/108 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I A+ + + L+ LA + T +K +R P+ E + + + + Sbjct: 7 IAAALKAIRKARGLSQYKLAEVS--SRTYVSKLERGQS-----SPTLEMMSTLSSPLGLS 59 Query: 69 ICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 L+ L + + G P G W Sbjct: 60 PLALVALTLAAESGQSISSLIMHAEREIDELSQAGVLKELKIPPGEPW 107 >gi|290579706|ref|YP_003484098.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254996605|dbj|BAH87206.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 82 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 5/77 (6%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I + + + L+ S LA + + ++ S E +KI TI Sbjct: 5 RIQELRKINKLSQSELADALSVTRQTIISLEKGRYNA-----SLELAYKIAKYFGTTIED 59 Query: 72 LLDLPFSDGRTTEKKEK 88 + + K Sbjct: 60 VFIFEDENRGDDNNVSK 76 >gi|300771128|ref|ZP_07081004.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761798|gb|EFK58618.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 205 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 5/93 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + KI I + + +T LA +AG+ ++ + PS + Sbjct: 13 MKDNTIFKISSRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTV-----PSLLVLIN 67 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 I+ A + + SDG + Sbjct: 68 IIGALEIDLTEFFKGFTSDGDLGPVIVRRKEQY 100 >gi|238798765|ref|ZP_04642236.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] gi|238717397|gb|EEQ09242.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] Length = 279 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 55/218 (25%), Gaps = 20/218 (9%) Query: 5 SHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 SH++ + I ++ + ++T LA G + + + R E Sbjct: 9 SHQENCVMVQNNIKQLRIQLSITQRELAAAVGTSQQQIQRIETGKVAAR-----LEVAQA 63 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS----GSGGFFDSGVFPTGNKWN 116 I + + + + R K + G S + Sbjct: 64 ICSVLKKPLNVVFPNGDHMLRRLSDKRSSCDDDLGEMAKNGIEMDGCAWSVKLWLRGHQD 123 Query: 117 TVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 + +P + YA D+ + + + G Sbjct: 124 YLLLPISPADQRRFYAYFQEKASPDIEHFFVFDSDEHRYALNSREVAFHQFLFEPLGRVF 183 Query: 172 LIKPR--TGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207 + + +++ G +I+L + + Sbjct: 184 VGENHKEDDGFTVHIILENGGPAIELCCESDELEDEEF 221 >gi|227502753|ref|ZP_03932802.1| Cro/CI transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|306835340|ref|ZP_07468363.1| Cro/CI transcriptional regulator [Corynebacterium accolens ATCC 49726] gi|227076483|gb|EEI14446.1| Cro/CI transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|304568773|gb|EFM44315.1| Cro/CI transcriptional regulator [Corynebacterium accolens ATCC 49726] Length = 75 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Query: 1 MTSFSHKK---IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M + S ++ + +DR+ E +T + LA++ G+ P + + K + R+ + + Sbjct: 1 MKALSEEQEPQVICHLDRIMEERGITGAALAKEVGITPVNLSVLKNNRAKAV-RFNTLAA 59 Query: 58 IFKILAATNETICQ 71 + L I + Sbjct: 60 LCAALDCQPGDIFE 73 >gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016] gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 83 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT+ K+ + I + + N+T LA G++ + ++ + I P E+I K Sbjct: 1 MTAM---KVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPI--PKLEAISK 55 Query: 61 ILAAT 65 L Sbjct: 56 ALEVP 60 >gi|210634331|ref|ZP_03298067.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279] gi|210158858|gb|EEA89829.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279] Length = 206 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 2/112 (1%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I E ++ LA K + + + +R S + + + + Sbjct: 2 DISNQIKTRREAMGISQEQLAEKLYVSRQTISNWERNKT--YPDVQSLLMLSILFDTSID 59 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119 T+ + + ++K + + G + V ++ + Sbjct: 60 TLVKGDVTIMEEAVERDRKRMGAQMQWLAVLMLGLLALTLVLMLTPAFDWME 111 >gi|254467746|ref|ZP_05081153.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206684183|gb|EDZ44669.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 83 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 18/46 (39%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + K I A+ + LT LA +AG+ + + + + Sbjct: 6 RTPKDIGTALRNARKAQGLTQGELAARAGVWQRTVSSIETSSSGAK 51 >gi|197334373|ref|YP_002156283.1| HTH-type transcriptional regulator HipB [Vibrio fischeri MJ11] gi|197315863|gb|ACH65310.1| HTH-type transcriptional regulator HipB [Vibrio fischeri MJ11] Length = 87 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ K++ + + +HNLT + LA+K G+ ++ + + +++FK Sbjct: 5 MMIYNPKQLANHLKLIRTKHNLTQTELAKKVGVKQSTLSSFENH-----PETTQLQTLFK 59 Query: 61 ILAATNET 68 IL A Sbjct: 60 ILHALEVH 67 >gi|183600898|ref|ZP_02962391.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] gi|188019224|gb|EDU57264.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] Length = 95 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 17/37 (45%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 +I E I + + LT + L + G+ ++ +R Sbjct: 15 EIGEFIRMIRIKKGLTGAELGKLIGVSQQQISRYERG 51 >gi|163716598|gb|ABY40510.1| putative repressor [Burkholderia phage Bups phi1] Length = 118 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 16/47 (34%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 M + + + E L+ +A G+ + K +R G Sbjct: 1 MPAMENPEFGRRAKERREALGLSQKHVAELVGVSQPAIAKVERGGST 47 >gi|270308504|ref|YP_003330562.1| DNA-binding protein [Dehalococcoides sp. VS] gi|270154396|gb|ACZ62234.1| DNA-binding protein [Dehalococcoides sp. VS] Length = 69 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 5/70 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + +NLT LA K G+ + +R PS E FKI A TI ++ Sbjct: 5 LKVLRAINNLTQEELADKLGITRQTVISIERGKY-----SPSLELAFKIAALFKTTIEEV 59 Query: 73 LDLPFSDGRT 82 Sbjct: 60 FTYNTEQEGQ 69 >gi|163849608|ref|YP_001637651.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163661213|gb|ABY28580.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 134 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 2/95 (2%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + E I + + LT + L + G+ K + S I ++L + Sbjct: 18 VGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLS--DIARVLEVRVSS 75 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + D + + + S Sbjct: 76 FYDGDEGEGEDRAEVFGFLRTHGAIDLLRAFSEIE 110 >gi|86742835|ref|YP_483235.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86569697|gb|ABD13506.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 403 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ R ++T + LA +AG+ K ++ +G R + S+ + L T Sbjct: 7 LGDRVAQVRVRRSMTQTELAERAGVSTDLVTKLEQGQRDG-IRISTLHSLARALDVPTAT 65 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93 ++ +++ L Sbjct: 66 FFEVEQEETVSDNEAFIPLRKLLLP 90 >gi|59712076|ref|YP_204852.1| DNA-binding transcriptional regulator HipB [Vibrio fischeri ES114] gi|59480177|gb|AAW85964.1| HipB transcriptional repressor, hipAB operon [Vibrio fischeri ES114] Length = 87 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M ++ K++ + + +HNLT + LA+K G+ ++ + + +++FK Sbjct: 5 MMIYNPKQLANHLKLIRTKHNLTQTELAKKVGVKQSTLSSFENH-----PETTQLQTLFK 59 Query: 61 ILAATNET 68 IL A Sbjct: 60 ILHALEVH 67 >gi|39997211|ref|NP_953162.1| transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984101|gb|AAR35489.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA] Length = 143 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + L+ + LA +A L ++ + G R PS +++ K+ + + Sbjct: 35 ERLKSLMADKGLSSAELADRADLARSALTQFF-----GGERKPSADALVKLANVLDSS 87 >gi|29350141|ref|NP_813644.1| hypothetical protein BT_4733 [Bacteroides thetaiotaomicron VPI-5482] gi|253571670|ref|ZP_04849076.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384450|ref|ZP_06994010.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|29342053|gb|AAO79838.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251838878|gb|EES66963.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262729|gb|EFI05593.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 101 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + I+ ++ +T + LAR+ G D + ++ + E P + ++I+ A Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTE-----PKVSTFYRIMNALGC 93 >gi|15614688|ref|NP_242991.1| post-exponential-phase responses transcriptional regulator [Bacillus halodurans C-125] gi|10174744|dbj|BAB05844.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre) family) [Bacillus halodurans C-125] Length = 112 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E + + L+ S LA +AG+ + + +R PS + KI + + Sbjct: 3 IGERVKKYRLEKELSLSELAERAGVAKSYLSSIERNIQT----NPSIHFLEKISQVLDVS 58 >gi|75758481|ref|ZP_00738602.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904936|ref|ZP_04068988.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL 4222] gi|74494008|gb|EAO57103.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228854678|gb|EEM99284.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL 4222] Length = 65 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + + ++ LA + GL T ++ + + P+ + KI + Sbjct: 4 IAELRKEKLISQEKLAEQVGLSRTYISEIENN-----KKQPNVKLAIKIAKVLGTS 54 >gi|115359716|ref|YP_776854.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285004|gb|ABI90520.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] Length = 203 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 6/147 (4%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 22 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 76 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEI 123 T+ +L P + +IP L + +W + +P Sbjct: 77 LGITLDELFSQPKAAETIRVDGPHDIPTLAGHDGRYQLRVWGPIDLAGKFEWYELTLPGG 136 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL 150 + + + T++ + Sbjct: 137 GALVSNAHEPGTREHLTVLHGAMEIDA 163 >gi|329889881|ref|ZP_08268224.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845182|gb|EGF94746.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 133 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 16/51 (31%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59 I E + R + L+ + L K G+ K + S+ Sbjct: 14 IGERVRRRRKELGLSQTALGAKIGVSCQQIQKYENGRNSVAASRLHQLSLA 64 >gi|328471556|gb|EGF42436.1| DNA-binding protein [Listeria monocytogenes 220] Length = 125 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + +++ LT LA K G ++ +K + P + K+ T Sbjct: 4 GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 57 >gi|327393838|dbj|BAK11260.1| putative HTH-type transcriptional regulator YdcN [Pantoea ananatis AJ13355] Length = 181 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 H+ + + + ++ + + + S A K G+ + +R P+ +++KI Sbjct: 5 HQYLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGES-----SPTVATLWKIATGF 59 Query: 66 NETI 69 N Sbjct: 60 NVPF 63 >gi|325262886|ref|ZP_08129622.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324031980|gb|EGB93259.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 81 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 6/69 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S+K I I + + + LT +A+K + + + + R P + +I Sbjct: 1 MMSNK-IGCKIRALRKMNYLTQEQMAKKLNMTRQTLSNYELG-----KRIPDIFELIRIA 54 Query: 63 AATNETICQ 71 ++ + Sbjct: 55 DLFQISLDE 63 >gi|317498577|ref|ZP_07956870.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894064|gb|EFV16253.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 217 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I E I E+ +T LA G+ P S K + + + + P E I L Sbjct: 3 IGEKIRYCREQIGITQGKLAELTGIHPVSIRKYE--TNKMQPQPPQLEKIAAALD 55 >gi|315304464|ref|ZP_07874746.1| DNA-binding protein [Listeria ivanovii FSL F6-596] gi|313627167|gb|EFR96018.1| DNA-binding protein [Listeria ivanovii FSL F6-596] Length = 118 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + +++ LT LA K G ++ +K + P + K+ T Sbjct: 7 GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 60 >gi|313206573|ref|YP_004045750.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312445889|gb|ADQ82244.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315023431|gb|EFT36439.1| helix-turn-helix domain protein [Riemerella anatipestifer RA-YM] gi|325335979|gb|ADZ12253.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 122 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 5/84 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 KI I R+ ER + +A++ + S+ + + + + E + KI Sbjct: 2 NKIGVNIRRLRERKGFSQEYVAQELNISQASYARLENENTK-----VTVERLSKIAEILE 56 Query: 67 ETICQLLDLPFSDGRTTEKKEKEI 90 I + + +T E Sbjct: 57 TDITEFFNENRLSIQTQNNYEGSY 80 >gi|310826387|ref|YP_003958744.1| hypothetical protein ELI_0767 [Eubacterium limosum KIST612] gi|308738121|gb|ADO35781.1| hypothetical protein ELI_0767 [Eubacterium limosum KIST612] Length = 113 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 5/116 (4%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + K I + I + N++ LARK G+ T + + S +S+ + Sbjct: 3 SRLDQKAIGQRIRQRRTFLNMSREDLARKIGITQTFLTDIELGT-----KGFSLKSLERF 57 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 A + +L D + +I +F ++ Sbjct: 58 CEALKMSSDSILFGKSLDEKEKNTALLDILEHCPDEKKEYAERMMMLFLMSHETEN 113 >gi|293378376|ref|ZP_06624545.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292643240|gb|EFF61381.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 370 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 8/120 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + ++ +T LA G+ S +K + P + K Sbjct: 1 MEELS---LSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQS-----MPDVLILPK 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + + ++ +LL + + + F + ++ Sbjct: 53 LASFFDVSVDELLGYHPQLTKEQIRHFYQQWTTAFSEEPFEYVMEDCRKAVKQYYSCYPF 112 >gi|291544668|emb|CBL17777.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 119 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I ++ + + LT + LA ++ +S + R PS +I + N + Sbjct: 8 IGNKIRQLRKENKLTQAQLAAVCYINRSSIGLYENG-----LREPSAGTIAYLAKYFNVS 62 >gi|269963851|ref|ZP_06178163.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831338|gb|EEZ85485.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 269 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + A+ + + LT L+ K G+ ++F KR + Sbjct: 1 MRELTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101 + T + + +L + ++ + + ++ FP Sbjct: 58 AVDCTLDELQKLANQLQAEDQDYFSRTQDEVFFQFPHLYDF 98 >gi|300022307|ref|YP_003754918.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299524128|gb|ADJ22597.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 218 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 10/168 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I I R NLT + L+ AGL ++ + S +++ ++ AA Sbjct: 36 RIGAVIKRRRAEANLTLADLSAGAGLSSAMLSRIENGMAMA-----SLDALERLCAAVGI 90 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGV---PEI 123 + L + + + ++ + G + + G + + Sbjct: 91 GLGDLFKETDTQRGSAQLVKRAEQMEVVRVGTKFGHTYRLLAYDRGPRKLFEPFFIEMDK 150 Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171 +S ++ + + Q + L+ GD + Sbjct: 151 KSESYPRFSHPGTEFIYMLQGRMEYR-FGDRTYLVEPGDAFTFSGDVV 197 >gi|255029672|ref|ZP_05301623.1| DNA-binding protein [Listeria monocytogenes LO28] Length = 68 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + +++ LT LA K G ++ +K + P + K+ T Sbjct: 7 GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 60 >gi|228962054|ref|ZP_04123549.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797628|gb|EEM44746.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 125 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + + + L+ L G+ T+ + + G E P +++ +I + + Sbjct: 9 GQRLKELRKNKKLSMRQLGEVLGVKQTNVSNWENVGTE-----PDYKTLIRIAQFFDVST 63 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLL 93 L+ K+++EI LL Sbjct: 64 DYLIGNSVEFNDNESKEKREIALL 87 >gi|229156698|ref|ZP_04284785.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 4342] gi|228626618|gb|EEK83358.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 4342] Length = 125 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 5/73 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + + N + A + G+ +++ + R PS +S+ KI + ++ Sbjct: 2 LERLSELRKNQNWSLQETADRLGIAKSTYAGYENGY-----RLPSLQSLSKIADLFDTSV 56 Query: 70 CQLLDLPFSDGRT 82 +L Sbjct: 57 DYILGRIEHSHPN 69 >gi|224825808|ref|ZP_03698912.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224602032|gb|EEG08211.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 65 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 13/37 (35%) Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 +R LT + LA+ G +K + + Sbjct: 5 KEARKRLGLTQNDLAKAVGASQAHISKLENGTEQVSP 41 >gi|168183417|ref|ZP_02618081.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|182673458|gb|EDT85419.1| putative DNA-binding protein [Clostridium botulinum Bf] Length = 140 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 4/89 (4%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + L+ LA + + T ++ + + PS + I + Sbjct: 4 GEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQ----NPSPNILKSIAPHLGISY 59 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98 +L+ + E ++ + Sbjct: 60 GELMIKAGYIDESIEHEKYTEHIFRNSDG 88 >gi|196040012|ref|ZP_03107315.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196029271|gb|EDX67875.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 186 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 H ++ + I +++ +T A AG+ + ++ +R E I K L Sbjct: 1 MIHDRLGQTILSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSV--LELIAKALN 58 Query: 64 AT 65 Sbjct: 59 VP 60 >gi|167032863|ref|YP_001668094.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859351|gb|ABY97758.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 177 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 18/196 (9%), Positives = 50/196 (25%), Gaps = 28/196 (14%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 H + + + ++ + LA ++G+ + S ++ I Sbjct: 1 MLQHVSL--NVRSLRNAAGMSQTALAERSGVSRRMLVAIEAGEKN-----VSLTTLDLIA 53 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 A L+ P + +G + + T V + E Sbjct: 54 EALGVAFSTLIQAPDLRDP--------GRIEELAWAGEHPQSRAVLLGTSAARREVELWE 105 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNCGDRLLIKPRTGDI 180 Y+ + + S +G + ++ + ++ G + Sbjct: 106 WTLAPGECYSSEADA-----EGWSEQIYVAEGQLTLIIEDVEHRLQVGQFHVFPSNC--- 157 Query: 181 VAKVLISRRGRSIDLM 196 R ++ + Sbjct: 158 ---RYAYRNDGAVAVR 170 >gi|167033912|ref|YP_001669143.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860400|gb|ABY98807.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 199 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 21/180 (11%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + +R +T + LA + L ++ +R +PS ++F I + T Sbjct: 20 LGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLS-----YPSIPALFNIARSLGVT 74 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125 Q + ++ G D + P N+ + P Sbjct: 75 -IQWFFASEATTAPEDQGYVVRRNSRLSVHYEDGIVDQLLTPQPNRQLEILHSRFPPGTY 133 Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL------YRKGDILILNSAIQVNCG-----DRLLIK 174 Y+ ++ + T L + +GD +S G D ++I Sbjct: 134 -SQQSYSHDGEEAGYLLSGTFELWVGERHFQLSEGDSFSFSSQEPHRYGNPGEVDAVVIW 192 >gi|114766440|ref|ZP_01445405.1| putative DNA-binding protein [Pelagibaca bermudensis HTCC2601] gi|114541297|gb|EAU44346.1| putative DNA-binding protein [Roseovarius sp. HTCC2601] Length = 184 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 14/169 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S ++ + + + +LT LA ++GL + ++ ++ + P+ E + K Sbjct: 1 MVSPLTTRLSQRLSALRAERDLTLEALAAQSGLSRAALSRMEKAEV-----SPTAEQLGK 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + AA T+ +LL + E E P+ G + Sbjct: 56 LCAAYGLTMSRLLAMVEESF-PACVPEAEQPVWQDRGFTRRVVSPGSAALAGEVLDCTLA 114 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169 P+ ++ + + + + + GD Sbjct: 115 PDSDISYHRPPVADLEHHLVLLTGRL--------AVTLDDRRHDLAPGD 155 >gi|16801490|ref|NP_471758.1| hypothetical protein lin2428 [Listeria innocua Clip11262] gi|289435611|ref|YP_003465483.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|16414950|emb|CAC97655.1| lin2428 [Listeria innocua Clip11262] gi|289171855|emb|CBH28401.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313617561|gb|EFR89887.1| DNA-binding protein [Listeria innocua FSL S4-378] gi|313622678|gb|EFR93041.1| DNA-binding protein [Listeria innocua FSL J1-023] gi|313632189|gb|EFR99260.1| DNA-binding protein [Listeria seeligeri FSL N1-067] gi|313636591|gb|EFS02297.1| DNA-binding protein [Listeria seeligeri FSL S4-171] Length = 115 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + +++ LT LA K G ++ +K + P + K+ T Sbjct: 4 GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 57 >gi|16804372|ref|NP_465857.1| hypothetical protein lmo2334 [Listeria monocytogenes EGD-e] gi|217963568|ref|YP_002349246.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|226224879|ref|YP_002758986.1| transcriptional regulator [Listeria monocytogenes Clip81459] gi|254831241|ref|ZP_05235896.1| DNA-binding protein [Listeria monocytogenes 10403S] gi|254901140|ref|ZP_05261064.1| DNA-binding protein [Listeria monocytogenes J0161] gi|254992018|ref|ZP_05274208.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] gi|255022554|ref|ZP_05294540.1| DNA-binding protein [Listeria monocytogenes FSL J1-208] gi|255025516|ref|ZP_05297502.1| DNA-binding protein [Listeria monocytogenes FSL J2-003] gi|255519749|ref|ZP_05386986.1| DNA-binding protein [Listeria monocytogenes FSL J1-175] gi|284802775|ref|YP_003414640.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578] gi|284995917|ref|YP_003417685.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923] gi|16411822|emb|CAD00412.1| lmo2334 [Listeria monocytogenes EGD-e] gi|217332838|gb|ACK38632.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|225877341|emb|CAS06055.1| Putative transcriptional regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284058337|gb|ADB69278.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578] gi|284061384|gb|ADB72323.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923] gi|307571856|emb|CAR85035.1| HTH-type transcriptional regulator, putative [Listeria monocytogenes L99] gi|328465370|gb|EGF36617.1| DNA-binding protein [Listeria monocytogenes 1816] Length = 115 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + +++ LT LA K G ++ +K + P + K+ T Sbjct: 4 GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 57 >gi|46908504|ref|YP_014893.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092432|ref|ZP_00230222.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47096032|ref|ZP_00233634.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499013|ref|ZP_03667362.1| DNA-binding protein [Listeria monocytogenes Finland 1988] gi|224503536|ref|ZP_03671843.1| DNA-binding protein [Listeria monocytogenes FSL R2-561] gi|258611370|ref|ZP_05231528.2| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258612011|ref|ZP_05243634.2| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|258612332|ref|ZP_05270022.2| DNA-binding protein [Listeria monocytogenes F6900] gi|290893622|ref|ZP_06556604.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|293596277|ref|ZP_05230092.2| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|293596748|ref|ZP_05264022.2| DNA-binding protein [Listeria monocytogenes J2818] gi|293597029|ref|ZP_05266697.2| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300763918|ref|ZP_07073914.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL N1-017] gi|46881776|gb|AAT05070.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47015629|gb|EAL06560.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|47019209|gb|EAL09952.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258599219|gb|EEW12544.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258607678|gb|EEW20286.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|258610937|gb|EEW23545.1| DNA-binding protein [Listeria monocytogenes F6900] gi|290556824|gb|EFD90356.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|293584899|gb|EFF96931.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|293592028|gb|EFG00363.1| DNA-binding protein [Listeria monocytogenes J2818] gi|293594334|gb|EFG02095.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|300515259|gb|EFK42310.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL N1-017] gi|332312759|gb|EGJ25854.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 118 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 E + + +++ LT LA K G ++ +K + P + K+ T Sbjct: 7 GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 60 >gi|332703646|ref|ZP_08423734.1| hypothetical protein Desaf_2517 [Desulfovibrio africanus str. Walvis Bay] gi|332553795|gb|EGJ50839.1| hypothetical protein Desaf_2517 [Desulfovibrio africanus str. Walvis Bay] Length = 187 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 17/175 (9%), Positives = 51/175 (29%), Gaps = 9/175 (5%) Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + A + Q + + + T + Sbjct: 1 MADNAATPRASSDQAPRSRPHLSPEDCCEIVDDGPKHGSIMRMNRLLALEGQATQSTTEA 60 Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPR 176 + R +A + ++ +D M P R G I+ +++ + + G+ L++ Sbjct: 61 LPFDLDRLRRMAGHAARITTFPYEIRDRGMEPSLRLGSIVGVDAEQRGLISGELYLLQFP 120 Query: 177 TGDI-----VAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223 + + + + + + + + Y + ++ R++W Q Sbjct: 121 AIGAQPRAAIVRRVYHGEQPGVLLVRAEDETYSEPPMPAEEVLAAIRGRVVWVMQ 175 >gi|326333336|ref|ZP_08199583.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium Broad-1] gi|325948980|gb|EGD41073.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + LT LAR++G S + +R + P+ + +IL + Sbjct: 7 GSLLKAARVARGLTQETLARRSGTSQPSLSAYERGT-----KSPTLAVLERILRCLDFE 60 >gi|313619216|gb|EFR90979.1| signal peptidase I [Listeria innocua FSL S4-378] Length = 167 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM+P D +I+N +V+ D ++ + G K +I G +++ + Sbjct: 21 ILVDGISMMPTLHSDDRVIINRFGEVDRFDVIVFREADGKEYIKRVIGLPGDTVEYKAD 79 >gi|296140142|ref|YP_003647385.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028276|gb|ADG79046.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 113 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAAT 65 + + + + ++ LA +AGL + +R G R P +++++ AA Sbjct: 13 DSLAYRLLTLRKARGISQEKLAERAGLHRNQISNIERNVSSGDRFSDPHMSTLYRLAAAL 72 >gi|294679084|ref|YP_003579694.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477900|gb|ADE87287.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 114 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 A+ + LT + LA K+G++ + + + +G S ++ + A ++ Sbjct: 56 SALRVYRDLRGLTQAALAEKSGVNRVTVAEIETGRKQG-----SIATLRALADALGVSLD 110 Query: 71 Q 71 Sbjct: 111 D 111 >gi|258447676|ref|ZP_05695818.1| cI-like repressor protein [Staphylococcus aureus A6300] gi|257853523|gb|EEV76484.1| cI-like repressor protein [Staphylococcus aureus A6300] Length = 116 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + + ++ ++ S L+R+ G+ S + E + + K L + Sbjct: 10 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 67 Query: 71 QL 72 Sbjct: 68 GF 69 >gi|312109406|ref|YP_003987722.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|311214507|gb|ADP73111.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 139 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 7/68 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +K+ E + + ++HN T LA+ + + +K + + P +S+ K Sbjct: 1 MKKM--RKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGEL-----LPDVQSLEK 53 Query: 61 ILAATNET 68 + + Sbjct: 54 LSNLYEVS 61 >gi|239996716|ref|ZP_04717240.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii ATCC 27126] Length = 175 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + + + ++ + ++ S LA AG+ ++ ++ ++ P+ ++I++ Sbjct: 1 MNQSTLNILGRHLQKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGN-----PTLDTIWR 55 Query: 61 ILAATNETICQ 71 + + Q Sbjct: 56 LAKQLDVPFGQ 66 >gi|227507935|ref|ZP_03937984.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192599|gb|EEI72666.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 212 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I E I + ++ NLT LA + L + + + +P +SI ++ + Sbjct: 8 ISEKIKQCRKQKNLTQKDLADELHLSRKTISGWENGRG-----YPDIKSITQLSDIFGIS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115 + LL ++ ++ + + G + Sbjct: 63 VDDLLRDDNLLEHYADQDKRSLLANKIAQITYYLILALTIVSYGTIF 109 >gi|224825971|ref|ZP_03699074.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224601608|gb|EEG07788.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 188 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 37/137 (27%), Gaps = 15/137 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 + + + + + LA AG+ + S ++ ++ AA Sbjct: 11 DVSANLRQARQALGWSQDKLATAAGVSRRMLVNIEAGDSN-----VSLATLDRLAAALGL 65 Query: 68 TICQLLDLPFSD----------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + +L+ P ++ + L +G G +++ Sbjct: 66 SFAELVRPPAANPRQPAAPVTVWQGRHPDSHASLLQSLGSAGRTVELWLWQLAAGERYDA 125 Query: 118 VGVPEIRSPHNGIYAIQ 134 P + A + Sbjct: 126 EADPAGSHEMLYVIAGE 142 >gi|221234777|ref|YP_002517213.1| MerR family transcriptional regulator [Caulobacter crescentus NA1000] gi|220963949|gb|ACL95305.1| transcriptional regulator, MerR family [Caulobacter crescentus NA1000] Length = 480 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 11/69 (15%) Query: 1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 M + K+ + + R+ +T + +A + G+ + N +R R + Sbjct: 1 MATLEKKQNDKKLFLGGRLKRLRRDLGVTQARMAEELGVSASYLNLLERNQ-----RPVT 55 Query: 55 TESIFKILA 63 + + ++ Sbjct: 56 AQILLRLAD 64 >gi|219853774|ref|YP_002470896.1| hypothetical protein CKR_0431 [Clostridium kluyveri NBRC 12016] gi|219567498|dbj|BAH05482.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 69 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ + N LA G+ + N + + P+ FK+ T Sbjct: 9 IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYD-----PTLLLAFKLANILGTT 59 >gi|153953129|ref|YP_001393894.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346010|gb|EDK32546.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 65 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ + N LA G+ + N + + P+ FK+ T Sbjct: 5 IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYD-----PTLLLAFKLANILGTT 55 >gi|160895617|ref|YP_001561199.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361201|gb|ABX32814.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 227 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 6/104 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + H+ + + + + LT +A +GL ++ +K++R I S E + Sbjct: 39 MPAGKHE-VGAKLRKARKERGLTLQQVAESSGLAVSTISKAERGQI-----ALSYEKVLM 92 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + A + + +L + + + + Sbjct: 93 LGNALDIDMTRLFMVGDAQQAAGDTPTVVKDCFEDVQRYETDQY 136 >gi|161521857|ref|YP_001585284.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351982|ref|YP_001947609.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345907|gb|ABX18992.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189336004|dbj|BAG45073.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 203 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 6/144 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 25 RVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 79 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSP 126 T+ +L P + +IP L + +W + +P + Sbjct: 80 TLDELFSQPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPIDLAGKFEWYELTLPGGGAL 139 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL 150 + + T++ Q T + Sbjct: 140 VSNAHEPGTREHLTVLQGTMEIEA 163 >gi|38637847|ref|NP_942821.1| putative regulatory protein [Ralstonia eutropha H16] gi|32527185|gb|AAP85935.1| putative regulatory protein [Ralstonia eutropha H16] Length = 167 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + AI R LT LA AGL S N + + + +S+ +++ Sbjct: 6 LGNAIQRKRVALGLTQQQLADMAGLSRQSLNGIEHGSVNA-----TLQSLGRLMDVLG 58 >gi|91790853|ref|YP_551804.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91700733|gb|ABE46906.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 231 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 18/46 (39%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + ++ I + H + LA AGL + + ++ + G Sbjct: 12 KLTAAELAAFIKAYRQVHRWSQEQLADIAGLSVRTIQRVEQGAVAG 57 >gi|28870630|ref|NP_793249.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971343|ref|ZP_03399458.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301381233|ref|ZP_07229651.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302061820|ref|ZP_07253361.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302131845|ref|ZP_07257835.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853878|gb|AAO56944.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923881|gb|EEB57461.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|331019463|gb|EGH99519.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 189 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 15/133 (11%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 H + + R+ +L+ + LA K+G+ + S ++ ++ Sbjct: 10 PVLQH--VSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKN-----VSLATLDRV 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVFPTGN 113 A L+ P + + + LL + G+ Sbjct: 63 AEALEVAFSDLIQAPENRDHSRINELAWAGTIPGSKAVLLARAIARREVELWEFCLAPGD 122 Query: 114 KWNTVGVPEIRSP 126 + + PE S Sbjct: 123 AYVSEADPEGWSE 135 >gi|83648872|ref|YP_437307.1| IS21 family transposase [Hahella chejuensis KCTC 2396] gi|83636915|gb|ABC32882.1| transposase, IS21 family [Hahella chejuensis KCTC 2396] Length = 513 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 3/119 (2%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI E + R+ L+ +A G+ + ++ R E WP E++ Sbjct: 4 KRLSMRKIKEVL-RLKWERGLSNRQVAEACGISRPTVSEYLRRAAEADVSWPLPENLSGA 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + G ++ E + N + Sbjct: 63 QLEQLLFPPPPDLPAQARGIPDWRRIHEELRGKNVTLFL--LWQEYREANPNGYQYSWF 119 >gi|83644045|ref|YP_432480.1| IS21 family transposase [Hahella chejuensis KCTC 2396] gi|83648283|ref|YP_436718.1| IS21 family transposase [Hahella chejuensis KCTC 2396] gi|83648971|ref|YP_437406.1| IS21 family transposase [Hahella chejuensis KCTC 2396] gi|83632088|gb|ABC28055.1| transposase, IS21 family [Hahella chejuensis KCTC 2396] gi|83636326|gb|ABC32293.1| transposase, IS21 family [Hahella chejuensis KCTC 2396] gi|83637014|gb|ABC32981.1| transposase, IS21 family [Hahella chejuensis KCTC 2396] Length = 513 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 3/119 (2%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 S +KI E + R+ L+ +A G+ + ++ R E WP E++ Sbjct: 4 KRLSMRKIKEVL-RLKWERGLSNRQVAEACGISRPTVSEYLRRAAEADVSWPLPENLSGA 62 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + G ++ E + N + Sbjct: 63 QLEQLLFPPPPDLPAQARGIPDWRRIHEELRGKNVTLFL--LWQEYREANPNGYQYSWF 119 >gi|33591920|ref|NP_879564.1| putative transcriptional regulator [Bordetella pertussis Tohama I] gi|33595020|ref|NP_882663.1| putative transcriptional regulator [Bordetella parapertussis 12822] gi|33599298|ref|NP_886858.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] gi|33565096|emb|CAE40047.1| putative transcriptional regulator [Bordetella parapertussis] gi|33571564|emb|CAE41050.1| putative transcriptional regulator [Bordetella pertussis Tohama I] gi|33575344|emb|CAE30807.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] gi|332381337|gb|AEE66184.1| putative transcriptional regulator [Bordetella pertussis CS] Length = 147 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 11/110 (10%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +FS + + +LT LAR +GL ++ + + S+ S+ K Sbjct: 1 MKTFS-----DRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQ------SSRSVRK 49 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + AA + L S + Y+ G P Sbjct: 50 LAAALQVNLDWLETGKGSMESLADYSASPAGGAYYLMEPGSGEAPPRALP 99 >gi|116628702|ref|YP_813874.1| transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300362660|ref|ZP_07058836.1| transcriptional regulator [Lactobacillus gasseri JV-V03] gi|116094284|gb|ABJ59436.1| Predicted transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300353651|gb|EFJ69523.1| transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 70 Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 6/60 (10%) Query: 7 KKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++I + ++ L+ LA++ + + N + PS + K+ Sbjct: 3 ERIAMNRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYN-----PSLDLCLKLAHEL 57 >gi|330911300|gb|EGH39810.1| prophage MuSo1, transcriptional regulator, Cro/CI family [Escherichia coli AA86] Length = 213 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 7/88 (7%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64 + + E + + ++ + LAR++G+ T+ K + I +P+ +S+ + A Sbjct: 24 TINRFGERLKVAMK--GMSNAELARRSGMSETTIRKYLQGKI-----YPALDSLAIVADA 76 Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPL 92 ++ L +T + + + Sbjct: 77 CGVSLTWLATGEQQTNQTIVRDDAKQNY 104 >gi|325689902|gb|EGD31906.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] gi|325696861|gb|EGD38749.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] gi|327459814|gb|EGF06154.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 94 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + E+ + + +A G + + + + S+ ++ + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTI-----LDSVSLIRLADFYQIS 56 Query: 69 ICQLL 73 + +L Sbjct: 57 LDELC 61 >gi|310830502|ref|YP_003965603.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] gi|309249969|gb|ADO59535.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 291 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + ER T ++ G+ + N+ ++ G + PS + I K+ A + Sbjct: 155 DNFGSLIKHLRERKGYTLDDMSISTGISSSYINRIEK----GERKSPSVKVIQKLATALD 210 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93 LL++ + +TE + E LL Sbjct: 211 TNYMDLLNVANPENESTELQPLEEHLL 237 >gi|283784602|ref|YP_003364467.1| LacI-family transcriptional regulator [Citrobacter rodentium ICC168] gi|282948056|emb|CBG87620.1| putative LacI-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 336 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 11/131 (8%), Positives = 35/131 (26%), Gaps = 4/131 (3%) Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75 M +++ +T S +AR+AG+ + + R + E +F+ + Sbjct: 1 MQKKNKITMSDIAREAGVSQATVSLVLNNSRTIRLSDATRERVFQAAQQLGYQKMIVAHR 60 Query: 76 PFSDGRT----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131 + + + + S + + + + + + + Sbjct: 61 LEGQEEIALLVSGMPGYDPFVDALSEASSTAWHHDMLLSVYDYSDDIELARLILQQLAQR 120 Query: 132 AIQTQDTRHKT 142 Sbjct: 121 HCAGVIFASPV 131 >gi|256851171|ref|ZP_05556560.1| signal peptidase I [Lactobacillus jensenii 27-2-CHN] gi|260660595|ref|ZP_05861510.1| signal peptidase I [Lactobacillus jensenii 115-3-CHN] gi|282934637|ref|ZP_06339880.1| signal peptidase I [Lactobacillus jensenii 208-1] gi|297206036|ref|ZP_06923431.1| possible signal peptidase I [Lactobacillus jensenii JV-V16] gi|256616233|gb|EEU21421.1| signal peptidase I [Lactobacillus jensenii 27-2-CHN] gi|260548317|gb|EEX24292.1| signal peptidase I [Lactobacillus jensenii 115-3-CHN] gi|281301212|gb|EFA93513.1| signal peptidase I [Lactobacillus jensenii 208-1] gi|297149162|gb|EFH29460.1| possible signal peptidase I [Lactobacillus jensenii JV-V16] Length = 192 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSID 194 SM P + GD +I + GD +++ G + K ++ G SI Sbjct: 45 TVSGPSMQPTFENGDRIIALRHTSLKRGDIVILNAPDEPGALYIKRIVGMPGDSIT 100 >gi|269839064|ref|YP_003323756.1| peptidase S26B, signal peptidase [Thermobaculum terrenum ATCC BAA-798] gi|269790794|gb|ACZ42934.1| peptidase S26B, signal peptidase [Thermobaculum terrenum ATCC BAA-798] Length = 488 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 1/84 (1%) Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + SM P +GD++++ A + G + V ++ G Sbjct: 25 LGGRTAYVIVNGNSMYPTLHRGDLVLVRRAESYSPGQIAAYRYPDVGTVIHRVVGTAGDR 84 Query: 193 IDLMSLNCCYPVDTVEMSDIEWIA 216 + + + + E I Sbjct: 85 LIFKGDHNSWTD-GYRPTPAEVIG 107 >gi|218895737|ref|YP_002444148.1| DNA-binding protein [Bacillus cereus G9842] gi|228899368|ref|ZP_04063630.1| hypothetical protein bthur0014_5930 [Bacillus thuringiensis IBL 4222] gi|218545936|gb|ACK98330.1| DNA-binding protein [Bacillus cereus G9842] gi|228860274|gb|EEN04672.1| hypothetical protein bthur0014_5930 [Bacillus thuringiensis IBL 4222] Length = 72 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 I + + R N + S LA K G+ + ++ Sbjct: 3 ILNRVKELRARFNFSQSVLAEKVGVTRQTVAAIEKG 38 >gi|218528364|ref|YP_002419180.1| peptidase S24 and S26 domain protein [Methylobacterium chloromethanicum CM4] gi|218520667|gb|ACK81252.1| peptidase S24 and S26 domain protein [Methylobacterium chloromethanicum CM4] Length = 151 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 11/126 (8%) Query: 96 PPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153 P P + + +P P+ + SM Sbjct: 19 VPLMGPSLCAGFPSPAEDFVENALELPRWLVPN------PPATFLWRISGDSMRDAGIFD 72 Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDI 212 GD+ ++ +++ G ++ G++ K ++ G L N PV + E++++ Sbjct: 73 GDLACVDRSLKPGHGSVVVAAVD-GEMSIKRMV-VEGNRAHLSFDNAELPVYALEELAEV 130 Query: 213 EWIARI 218 + Sbjct: 131 NVWGVV 136 >gi|114569839|ref|YP_756519.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114340301|gb|ABI65581.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 136 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 9/92 (9%), Positives = 31/92 (33%), Gaps = 6/92 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + + + LA+ L + + + R S E++ + A+ + T ++ Sbjct: 3 LKTLRRSRGWSQADLAQICDLSERTIQRIESG------RTASLEAVKALAASFDMTAEEI 56 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 + R+ + + + + + Sbjct: 57 QAHLATRARSEPPGRQSSWQAWLWHALAFSIY 88 >gi|91214743|ref|ZP_01251716.1| hypothetical protein P700755_17799 [Psychroflexus torquis ATCC 700755] gi|91187170|gb|EAS73540.1| hypothetical protein P700755_17799 [Psychroflexus torquis ATCC 700755] Length = 104 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 6/58 (10%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 E + + L+ + LA+K G+ +S ++ R S S+ I + Sbjct: 18 GEKLSSLRVDAGLSQTELAQKTGMSRSSIAGIEKG------RNFSIASLISISRSLEF 69 >gi|16762390|ref|NP_458007.1| hypothetical protein STY3832 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143878|ref|NP_807220.1| hypothetical protein t3577 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25512349|pir||AD0945 probable DNA-binding protein STY3832 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504694|emb|CAD09582.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139514|gb|AAO71080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 188 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I ++ R ++ L+ + +AR+AG+ ++ ++ + PS E+++ + A Sbjct: 14 IARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVAL 65 >gi|323359481|ref|YP_004225877.1| hypothetical protein MTES_3033 [Microbacterium testaceum StLB037] gi|323275852|dbj|BAJ75997.1| hypothetical protein MTES_3033 [Microbacterium testaceum StLB037] Length = 1354 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 14/41 (34%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 + I L + LAR G+ + + +R R Sbjct: 5 LGTLIRVSRTATGLDQAELARAMGVGQQTVSAWERGRSRPR 45 >gi|312793726|ref|YP_004026649.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180866|gb|ADQ41036.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 85 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 22/45 (48%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + I ++++ + N++ S L G++P ++ +R + + Sbjct: 10 EVIMTKLEQLRRQKNISQSKLGLAIGVNPNIISQIERGWRKPYPK 54 >gi|296282095|ref|ZP_06860093.1| transcriptional regulator, Cro/CI family protein [Citromicrobium bathyomarinum JL354] Length = 63 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 5/56 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + N + LA + G+ S N + + PS F+I Sbjct: 3 NRLKVLRAERNWSQQALAEELGVSRQSVNAIETGRYD-----PSLPLAFQIAEVFG 53 >gi|256389455|ref|YP_003111019.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355681|gb|ACU69178.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 792 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 20/45 (44%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50 +++I + ER +L+ + LA + + + + + +R Sbjct: 15 NREIAAQLKSWRERRHLSQANLADRINVSRSHYTRLERGERPLHP 59 >gi|255024878|ref|ZP_05296864.1| helix-turn-helix domain protein [Listeria monocytogenes FSL J1-208] Length = 130 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIF 59 M S+ + + E+ + + AR+ GL P+++ + R P E + Sbjct: 1 MPKLSN-----RLTLLREKQGWSKAETARRLGLSAPSTYGNWEYGI-----REPDLEMVT 50 Query: 60 KIL 62 +I Sbjct: 51 QIA 53 >gi|228934608|ref|ZP_04097442.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825001|gb|EEM70799.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 374 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 20/196 (10%), Positives = 54/196 (27%), Gaps = 15/196 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S KI I + +T LA G+ S +K + +P + Sbjct: 1 MKEISIHKI---IADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPL 52 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 + + N +I +L+ + K F ++ + Sbjct: 53 LASYFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPL 112 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 I + + + + + + + + L+ + + Sbjct: 113 ------LLQIGILFINHHMLTEDTDRRI-EILEEAMNLFSRVQEESDDVSLVKEAVSFQA 165 Query: 181 VAKVLISRRGRSIDLM 196 +++++ + L+ Sbjct: 166 TCYLILNKPNEVLQLL 181 >gi|255505928|ref|ZP_05348929.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265073|gb|EET58278.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 7/83 (8%), Positives = 25/83 (30%), Gaps = 5/83 (6%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 ++ + I + N T +A + G+ + + + + + + I Sbjct: 1 MVMNELLGGRIKALRNAKNFTQEQIADRIGVSRQKYARIENGAN-----SITLDILSAIA 55 Query: 63 AATNETICQLLDLPFSDGRTTEK 85 + T+ + + + Sbjct: 56 EVLDVTVGDITKVLDEKPAVAYR 78 >gi|220913618|ref|YP_002488927.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860496|gb|ACL40838.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 67 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 13/40 (32%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I I R + +T LA G P + + + Sbjct: 7 IGAGIRRARKDAGITQRTLADLTGTSPRTIHAIETGTGNP 46 >gi|149178990|ref|ZP_01857565.1| DNA-binding protein [Planctomyces maris DSM 8797] gi|148842189|gb|EDL56577.1| DNA-binding protein [Planctomyces maris DSM 8797] Length = 205 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 3/41 (7%), Positives = 16/41 (39%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 ++ + + + + + L+ G+ + ++ +R Sbjct: 26 QLSQRVRELRKERGWSLDSLSAACGVSRSMLSQIERGEANP 66 >gi|116326508|ref|YP_794188.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116098007|gb|ABJ63157.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 204 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 +++ + H L+ + LARK + P + + + P E I KI + T+ Sbjct: 5 KSLKELRLLHELSQTQLARKLNVSPKTISNWENERN-----LPDIELIIKISKVLDVTLD 59 Query: 71 Q 71 + Sbjct: 60 E 60 >gi|323487870|ref|ZP_08093128.1| immunity repressor protein [Planococcus donghaensis MPA1U2] gi|323398604|gb|EGA91392.1| immunity repressor protein [Planococcus donghaensis MPA1U2] Length = 114 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + ++ +T LAR G S + + PS E + I N + Sbjct: 4 KRLKLVRQKRKMTQEELARTLGTTKGSISNYENGRS-----SPSVEVLVNIANILNSS 56 >gi|314933295|ref|ZP_07840660.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] gi|313653445|gb|EFS17202.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] Length = 179 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 5/67 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + NLT LA + L ++ + PS E+ IL Sbjct: 2 NIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHA-----SPSMETFLNILEVLGT 56 Query: 68 TICQLLD 74 + Sbjct: 57 SASDFFQ 63 >gi|255531981|ref|YP_003092353.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344965|gb|ACU04291.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 327 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 6/108 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + K I I ++ N++ LA++ + P + K +R P + ++ Sbjct: 1 MLNTKMIGNKITEARKKINISQVQLAQRLFISPQAVGKWERGES-----MPDIITFNRLS 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + + S + + F + SGG + F Sbjct: 56 EILGVDLNYFSESFQSGAMPIKLPSGKQDK-KFSWNMSGGNWVDADFS 102 >gi|225017175|ref|ZP_03706367.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum DSM 5476] gi|224950094|gb|EEG31303.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum DSM 5476] Length = 131 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 +++I + + E+ LT +A + G+ ++ + + GIE + + P +I +L Sbjct: 3 NREIGKRMKLAREQSGLTLQAVADRVGVAASTVQRYEAGGIE-KLKLPVLNAIADVLGVD 61 Query: 66 NET 68 Sbjct: 62 PGW 64 >gi|224539861|ref|ZP_03680400.1| hypothetical protein BACCELL_04771 [Bacteroides cellulosilyticus DSM 14838] gi|224518510|gb|EEF87615.1| hypothetical protein BACCELL_04771 [Bacteroides cellulosilyticus DSM 14838] Length = 103 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 + E + + LT LA + G T ++ + + Sbjct: 45 LAERLKEERLKAGLTQEQLAERIGTKKTYISRIENGKAD 83 >gi|210635363|ref|ZP_03298499.1| hypothetical protein COLSTE_02430 [Collinsella stercoris DSM 13279] gi|210158426|gb|EEA89397.1| hypothetical protein COLSTE_02430 [Collinsella stercoris DSM 13279] Length = 224 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAA 64 + +M +R L+ LA +AG+ S ++ + R + S + ++L Sbjct: 152 RLAKMRKRLGLSQRELAYRAGVSLRSIQMYEQRNKDINRAQVGSVAELARVLHC 205 >gi|85707731|ref|ZP_01038797.1| putative DNA binding protein [Erythrobacter sp. NAP1] gi|85689265|gb|EAQ29268.1| putative DNA binding protein [Erythrobacter sp. NAP1] Length = 68 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 5/71 (7%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 + E + LAR+ G+ + N + + PS ++ ++ Sbjct: 3 NRLKYHREAEGWSQGELARRLGVSRQTINAVETDKYD-----PSLPLALRMAKLFGVSVP 57 Query: 71 QLLDLPFSDGR 81 L + Sbjct: 58 DLFIDHWEPDA 68 >gi|83943150|ref|ZP_00955610.1| umuD protein [Sulfitobacter sp. EE-36] gi|83846158|gb|EAP84035.1| umuD protein [Sulfitobacter sp. EE-36] Length = 102 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 7/91 (7%) Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192 + + + + R GDI+ ++ A + G R ++ G + AK+L +RG Sbjct: 8 PSSTFWWRVEGDCLWDAGIRDGDIIAVDRAGKRRIG-RAVLAVVDGAVTAKIL-RKRGDR 65 Query: 193 IDLMSLN--CCYPVDTVEMSDIEW--IARIL 219 L N +P + W IA ++ Sbjct: 66 YYLAPANSQEQFPDVELTEDSEIWGVIAGVV 96 >gi|328951790|ref|YP_004369124.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452114|gb|AEB07943.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM 11109] Length = 717 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 5/78 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S I +A+ + E ++ + LA++ + ++ + I + I K Sbjct: 1 MEMTS---IRKALSSLREEAGISQAELAKRLPFTASRISRLESGEIAMTEED--AQEIAK 55 Query: 61 ILAATNETICQLLDLPFS 78 + Sbjct: 56 AIGTPKANDFNDYLSQDW 73 >gi|325968839|ref|YP_004245031.1| XRE family transcriptional regulator [Vulcanisaeta moutnovskia 768-28] gi|323708042|gb|ADY01529.1| XRE family transcriptional regulator [Vulcanisaeta moutnovskia 768-28] Length = 282 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 18/40 (45%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 + ++ E ++ LA+ G+ + + +R IE R Sbjct: 135 LRKLRENRGMSLGDLAKMLGVTRRTIYEYERGSIEASERT 174 >gi|319787830|ref|YP_004147305.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466342|gb|ADV28074.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 73 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 6/67 (8%) Query: 13 IDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 I R+ +T LA G+ + + PS E F+I A + Sbjct: 12 IRRLRFERGEMTQQALADACGVTRQTIIALEAGRY-----APSLELAFRIARAFGVGVED 66 Query: 72 LLDLPFS 78 + Sbjct: 67 VFHWREP 73 >gi|319782137|ref|YP_004141613.1| hypothetical protein Mesci_2417 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168025|gb|ADV11563.1| Protein of unknown function DUF2083,transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 480 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 I R+ LT + +A G+ P+ N +R R + + I ++ + Sbjct: 9 GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQ-----RPLTVQLILRLASVYKVDP 63 Query: 70 CQ 71 + Sbjct: 64 HE 65 >gi|317129456|ref|YP_004095738.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315474404|gb|ADU31007.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 239 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 4/152 (2%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ + + NLT L +++G+ + +K + G+ PS + + K+ + Sbjct: 4 KEFGLYLKSLRIEKNLTMRELDKRSGVSHSYISKME----SGQKGIPSPDILRKLAEPLS 59 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126 +L+ + + G + + I Sbjct: 60 VRYQKLMIKAGHFSEDEYTSINDYEARIEELDTKLENVLDDLSTNGEFYYVLIEDLIPIF 119 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 ++ + + D +KT D + D Sbjct: 120 NDDFFTGREHDNFNKTFDYFLEEKANDPDFNY 151 >gi|227499690|ref|ZP_03929793.1| hypothetical protein HMPREF0077_0428 [Anaerococcus tetradius ATCC 35098] gi|227218287|gb|EEI83546.1| hypothetical protein HMPREF0077_0428 [Anaerococcus tetradius ATCC 35098] Length = 74 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 6/55 (10%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + N++ LA+ G+ + + ++ S + KI Sbjct: 7 NNIRVLRAMKNVSQKELAKAVGVSQQTISTAENTSR------MSLTTAKKIADYF 55 >gi|163854504|ref|YP_001628802.1| putative DNA-binding protein [Bordetella petrii DSM 12804] gi|163258232|emb|CAP40531.1| putative DNA-binding protein [Bordetella petrii] Length = 136 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 4/99 (4%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 + + + R T LA +GL ++ + P++ ++ K+ A + Sbjct: 8 ETFGQRVRGARLRFGWTQKELASVSGLTQSAIGNYESGQRT----EPTSAALIKLAQALD 63 Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 T L + ++K +P + G+ Sbjct: 64 VTPEWLRQGKEAKDGPSKKSLSYMPKARQQKGLAAGWPF 102 >gi|27366645|ref|NP_762172.1| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|320158536|ref|YP_004190914.1| putative transcriptional regulator [Vibrio vulnificus MO6-24/O] gi|27358211|gb|AAO07162.1|AE016808_182 Predicted transcriptional regulator [Vibrio vulnificus CMCP6] gi|319933848|gb|ADV88711.1| predicted transcriptional regulator [Vibrio vulnificus MO6-24/O] Length = 207 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 13/177 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + R +T +++ GL ++ +K + I P+ +++ K+ Sbjct: 27 KLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLKI 81 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + QL + P T + N +P H Sbjct: 82 DMPQLFEPPRKKVATGRRDITLAGQ----GKPHPTQTYEHELLATQLSNKKMMPFKSVVH 137 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVA 182 + + L + V GD + G ++ Sbjct: 138 ARTFEEYGD--WVRHDGEEFLLILSGAVQFYSEFYEPVVLSEGDSVYYDANMGHMLV 192 >gi|148261636|ref|YP_001235763.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405126|ref|YP_004285208.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146403317|gb|ABQ31844.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325051988|dbj|BAJ82326.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 110 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 1 MTSFSH---KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57 M + + + I + +NLT A + G+ ++ + + G+ R + E Sbjct: 1 MAPKKQTPPESVGQRIRALRLANNLTQDEFAAQLGVSRSAIAQWETDRA-GQVRE-NLER 58 Query: 58 IFKIL 62 I K+L Sbjct: 59 ISKVL 63 >gi|148262951|ref|YP_001229657.1| cupin 2 domain-containing protein [Geobacter uraniireducens Rf4] gi|146396451|gb|ABQ25084.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 196 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 47/182 (25%), Gaps = 21/182 (11%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ E ++ + LT LA GL ++ + + P ++ KI Sbjct: 12 KLGEKARKLRQERRLTLQELAELTGLSKPLLSQIENDQVT-----PPIATLLKIAKGLKV 66 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-------VGV 120 I + + + P +GS P V Sbjct: 67 GIHYFFEEEGDRQKFVLTRGGSGPASKR-RAGSDIVQGYLYRPLAPGIRHKQIEPFLVAF 125 Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180 E + Y+ + + + + + G ++ + GD + Sbjct: 126 EETAWDDSRFYSHEGVEFIYLLEG---ELEFHYGQEIM-----TLQPGDSIYYDSSEPHG 177 Query: 181 VA 182 Sbjct: 178 YV 179 >gi|330982323|gb|EGH80426.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 55 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + + E + L+ LAR++G+ + + ++ + PS S+ K+L Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLE 52 >gi|325681181|ref|ZP_08160711.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107103|gb|EGC01389.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 70 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + M R + + + + AG + ++ +R PS K+ N + + Sbjct: 7 LKEMRARLGVNQAEMGKLAGTSRQTISQIERGDY-----SPSVTLALKLAKICNVKVEDI 61 Query: 73 LDLPFSDGR 81 + + Sbjct: 62 FEYEEDNNE 70 >gi|262282933|ref|ZP_06060700.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261185|gb|EEY79884.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 96 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + I + + ++LT AR G+ S ++ + STE I I N + Sbjct: 15 VGDNIKSLRKTNDLTQPEFARIVGISRNSLSRYENGTSP-----ISTELIDTICQKFNVS 69 Query: 69 I 69 Sbjct: 70 Y 70 >gi|253578754|ref|ZP_04856025.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849697|gb|EES77656.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 206 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I N+T LA+ A + ++ K + R P E + KI A ++ Sbjct: 4 GEIIKYFRLARNMTQEQLAQDAEISFSTLRKYE-----ANERNPKYEQLSKIADALGISV 58 Query: 70 CQLLDLP 76 +D Sbjct: 59 NLFMDFE 65 >gi|241759657|ref|ZP_04757758.1| Helix-turn-helix [Neisseria flavescens SK114] gi|241320029|gb|EER56410.1| Helix-turn-helix [Neisseria flavescens SK114] Length = 95 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I AI + T + LA +GL + ++ R P+ ++ KI A Sbjct: 2 NIGRAIKLCRNQKGFTKTKLAENSGLSVSYLTLLEQG-----KRDPNLSTLEKICLALQI 56 Query: 68 T 68 Sbjct: 57 P 57 >gi|169350310|ref|ZP_02867248.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] gi|169293093|gb|EDS75226.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] Length = 185 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 50/218 (22%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + + + LT LA ++ L ++ +R PS ++ IL A Sbjct: 10 DIGGKIKMLRQANGLTLEELANRSELTKGFLSQLERDLT-----SPSITTLEDILEALGT 64 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + + ++ F + + S + P K + + +P Sbjct: 65 NLQE-------FFSEKPAEQIVFKKDDFFVNEQDDYIISYIIPNAQKNDMEPILIEIAPG 117 Query: 128 NGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184 A+ + Q+ + Q L + + V K Sbjct: 118 KQSMALDPHEGQEFGYVVQGKVKL----------------------VYG---ENEFVLKK 152 Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222 G + L L Y V S+ + A+++W S Sbjct: 153 -----GETFYLKGLVSHY---LVNNSETK--AKVIWVS 180 >gi|167751674|ref|ZP_02423801.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] gi|167655482|gb|EDR99611.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] Length = 271 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 5/87 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I I + LT LA K + + +K + P E + +I A Sbjct: 2 NIGNVISEKRKALGLTQQALAEKLHVSFQAISKWENGTS-----CPDIELLPQIAAILKT 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLY 94 TI LL P +K+ + Sbjct: 57 TIDSLLGYPSQSVTDYDKRYGNEEYYW 83 >gi|161617166|ref|YP_001591131.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551474|ref|ZP_02345229.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991568|ref|ZP_02572667.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232973|ref|ZP_02658031.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237658|ref|ZP_02662716.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244212|ref|ZP_02669144.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263065|ref|ZP_02685038.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467376|ref|ZP_02701213.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821618|ref|ZP_02833618.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446538|ref|YP_002043263.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451910|ref|YP_002048044.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468718|ref|ZP_03074702.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736659|ref|YP_002116963.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251740|ref|YP_002148970.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263714|ref|ZP_03163788.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244893|ref|YP_002217966.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388606|ref|ZP_03215218.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930179|ref|ZP_03221156.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224585852|ref|YP_002639651.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912186|ref|ZP_04656023.1| hypothetical protein SentesTe_13791 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161366530|gb|ABX70298.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405201|gb|ACF65423.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410214|gb|ACF70433.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455082|gb|EDX43921.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712161|gb|ACF91382.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630241|gb|EDX48881.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197215443|gb|ACH52840.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241969|gb|EDY24589.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289380|gb|EDY28745.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939409|gb|ACH76742.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605704|gb|EDZ04249.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320583|gb|EDZ05785.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323777|gb|EDZ11616.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330070|gb|EDZ16834.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332759|gb|EDZ19523.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336928|gb|EDZ23692.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341774|gb|EDZ28538.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348305|gb|EDZ34936.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224470380|gb|ACN48210.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|312915157|dbj|BAJ39131.1| hypothetical protein STMDT12_C41880 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225331|gb|EFX50389.1| Putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|326625758|gb|EGE32103.1| Helix-turn-helix type 3 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 182 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A + Sbjct: 8 IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVALDIP 62 Query: 69 I 69 Sbjct: 63 F 63 >gi|172062153|ref|YP_001809804.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994670|gb|ACB65588.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 203 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + ++ E I R+ LT L+R AG+ + ++ +R Sbjct: 22 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANP 65 >gi|3219886|sp|Q57720|Y272_METJA RecName: Full=Uncharacterized HTH-type transcriptional regulator MJ0272 Length = 66 Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + HNLT LA+K G+ + ++ + PS + FKI I + Sbjct: 5 LKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYD-----PSLKLAFKIAKFFGVKIEDI 59 Query: 73 LDLPF 77 Sbjct: 60 FIYED 64 >gi|305664273|ref|YP_003860561.1| transcriptional regulator, XRE family [Ignisphaera aggregans DSM 17230] gi|304378842|gb|ADM28681.1| transcriptional regulator, XRE family [Ignisphaera aggregans DSM 17230] Length = 235 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESIFKILAATNET 68 +A+ + E N+T S LA+K + P+ + +R + ++ E++ KI Sbjct: 24 QALRKWREIFNVTQSDLAKKMDIAPSVLSDYERGRRQPGTKFIKKFVEALIKIDEERGYP 83 >gi|292490247|ref|YP_003525686.1| hypothetical protein Nhal_0078 [Nitrosococcus halophilus Nc4] gi|291578842|gb|ADE13299.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 167 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 16/42 (38%) Query: 6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47 H + + + + R + + LA++ G + +R Sbjct: 88 HGEEGDTVRTLRLRKGWSQARLAKELGTSQPHIARIERGTEN 129 >gi|316932268|ref|YP_004107250.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599982|gb|ADU42517.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 72 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 7/78 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M K + R+ LT + ++G + +R R P+ ++++ Sbjct: 1 MDM--RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERG-----RRNPTVITLYE 53 Query: 61 ILAATNETICQLLDLPFS 78 + A + +L+ Sbjct: 54 LSQALGVSHVELVQPDDQ 71 >gi|265750635|ref|ZP_06086698.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263237531|gb|EEZ22981.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 77 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49 M +F ++I I+ ++ N+T + LA K G + + ++ + E + Sbjct: 11 MNAFFTEQI---IEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPK 56 >gi|257791280|ref|YP_003181886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475177|gb|ACV55497.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 139 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 5/57 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I + E +T LA +AG + + R ++ I A Sbjct: 4 GSRIRALRESRGMTQRQLAERAGCTDAAIRNYEAG-----RRALKGSALDAIAGALG 55 >gi|256544850|ref|ZP_05472222.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] gi|256399739|gb|EEU13344.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] Length = 78 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I++ + L+ L +K G+ TS NK + PS ++ I A Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTI-----PSLKTANDIANAL 52 >gi|168701387|ref|ZP_02733664.1| hypothetical protein GobsU_17815 [Gemmata obscuriglobus UQM 2246] Length = 128 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 4/80 (5%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+I + + L+ +A KA L + K ++ R P ++ + A Sbjct: 5 KQIAYRLQTLRAAAGLSQEAIAEKADLSLSLVAKMEQ----ARKADPRASTLIALAGALG 60 Query: 67 ETICQLLDLPFSDGRTTEKK 86 +L++ Sbjct: 61 VRPGELIEDLVDPPEGAFPS 80 >gi|125718510|ref|YP_001035643.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498427|gb|ABN45093.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 197 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 ++ + I + NL+ LA + S + +R + + K+ Sbjct: 2 QVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGAT--YPDIQNLLLLSKVFE 55 >gi|83648919|ref|YP_437354.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636962|gb|ABC32929.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 106 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 + I + ++ LT LA K G + + + G++ R I K L T Sbjct: 5 LGAKIKELRKKKGLTLEQLAEKTGSGKSYIWEIENKGVK-RPSAEKLTLIAKALDVT 60 >gi|325570955|ref|ZP_08146574.1| signal peptidase IB [Enterococcus casseliflavus ATCC 12755] gi|325156281|gb|EGC68465.1| signal peptidase IB [Enterococcus casseliflavus ATCC 12755] Length = 191 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM ++GD++++ + D ++ + G K +I G S+ Sbjct: 45 VPVEGNSMEGTLKQGDMVVIEKISPIQRFDVVVFQLPDGSTYIKRVIGLPGESV 98 >gi|323485286|ref|ZP_08090635.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum WAL-14163] gi|323401322|gb|EGA93671.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum WAL-14163] Length = 141 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 9/72 (12%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLD----PTSFNKSKRFGIEGRNRWPSTESIFKIL 62 K + I + + L+ LA G + ++ +K + + T + I Sbjct: 10 KILGNNIKKYRDDKGLSQEALANLCGWNTDNARSTISKIESGTND-----VPTSKLKIIA 64 Query: 63 AATNETICQLLD 74 ++C L++ Sbjct: 65 EKLGVSVCDLMN 76 >gi|313898661|ref|ZP_07832196.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956545|gb|EFR38178.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 110 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 37/86 (43%), Gaps = 5/86 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + ++H L + LA+KA + ++ N + +N P+ ++ +L A + T+ Sbjct: 4 LEKLKLLMKQHGLNENQLAKKANVPQSTINSLFQ-----KNNLPTISTLEALLEALDMTL 58 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYF 95 + + +++ + F Sbjct: 59 SEFFYDDALMKKHQLEEQNLMSKWNF 84 >gi|290890757|ref|ZP_06553824.1| hypothetical protein AWRIB429_1214 [Oenococcus oeni AWRIB429] gi|290479529|gb|EFD88186.1| hypothetical protein AWRIB429_1214 [Oenococcus oeni AWRIB429] Length = 366 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 52/170 (30%), Gaps = 12/170 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKA----GLDPTSFNKSKRFGIEGRNRWPSTE 56 M K + + ++ E L+ L + A G + + ++ +PS + Sbjct: 15 MIKPDKKTLAAHLKQLRENKRLSQESLGKIATDNEGFNVPNVRRTVSDWENPDKGFPSAD 74 Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116 I +I T +LL SD +++ + + + F G + +K + Sbjct: 75 KIARICVFFQITPTELLFEKDSDMWELVLSNRDLSIKKLSETVNKFFEKFGFYDVLHKID 134 Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDT--------SMLPLYRKGDILI 158 V + P ++ + P + L+ Sbjct: 135 DVELSHKIFPKLSKRNLEDILYVLIFDGELSSLRKEKTNYPKISNQEFLL 184 >gi|239820588|ref|YP_002947773.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805441|gb|ACS22507.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 67 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + AI + + H ++ LA ++ +D + + +R P ++ +I A + Sbjct: 3 LGTAIKALRKTHGISQEELAHRSHIDRSYMSSIERGMQN-----PGVMTVVQIAAGLGVS 57 Query: 69 ICQ 71 + + Sbjct: 58 VAE 60 >gi|228931333|ref|ZP_04094262.1| Transcription regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828336|gb|EEM74042.1| Transcription regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 135 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI ++I +R+NL+ LA K G+ + +K ++ P E++ + N Sbjct: 2 KISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGT-----PDIENLILLSDEMNI 56 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96 ++ L+ S EK I + Sbjct: 57 SLDNLIKGNNSIKERIMNNEKAIKIHLLV 85 >gi|210623409|ref|ZP_03293788.1| hypothetical protein CLOHIR_01738 [Clostridium hiranonis DSM 13275] gi|210153604|gb|EEA84610.1| hypothetical protein CLOHIR_01738 [Clostridium hiranonis DSM 13275] Length = 77 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 2/53 (3%) Query: 1 MTS-FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 M + I + + +L+ S LA G+ + + + + Sbjct: 1 MKKNMKNDLILKNRLKVARAEKSLSQSELAEMIGVSRNTISSIETGQFNPTAK 53 >gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] Length = 126 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 9/65 (13%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M +++ I + LT L G+ ++ K + P E++ K Sbjct: 1 MPTYTGD----MIRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQN-----PKIETLQK 51 Query: 61 ILAAT 65 I A Sbjct: 52 IADAL 56 >gi|57234657|ref|YP_181292.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57225105|gb|AAW40162.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 67 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + I + R+NLT + LA G+ + ++ PS K+ A + Sbjct: 3 LRTRIKELRARYNLTQAELAETVGVSRQTMLYLEKGTYN-----PSLILAHKVAKALHAD 57 Query: 69 ICQLLDLPF 77 I + L Sbjct: 58 IDDVFILRD 66 >gi|329948033|ref|ZP_08294934.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523172|gb|EGF50273.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 62 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + E LT + L G+ S N ++ + PS I + ++ Sbjct: 5 VRSLREARGLTQAQLGAALGVSRQSINSIEKGKYD-----PSLPLAIAIARYFETAVEEI 59 Query: 73 LD 74 Sbjct: 60 FH 61 >gi|325964339|ref|YP_004242245.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323470426|gb|ADX74111.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 67 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 13/40 (32%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 I +I R + +T LA G + + + Sbjct: 7 IGASIRRARKEAGITQGTLADLVGTSARTIHAIETGTGNP 46 >gi|322805848|emb|CBZ03413.1| DNA-binding protein; possible transcriptional regulator [Clostridium botulinum H04402 065] Length = 370 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I E I R+ + +T LA G+ + +K + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGAS 43 >gi|322613196|gb|EFY10140.1| hypothetical protein SEEM315_17865 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619177|gb|EFY16060.1| hypothetical protein SEEM971_20829 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626043|gb|EFY22855.1| hypothetical protein SEEM973_21760 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626497|gb|EFY23303.1| hypothetical protein SEEM974_14708 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632390|gb|EFY29138.1| hypothetical protein SEEM201_18692 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635128|gb|EFY31849.1| hypothetical protein SEEM202_17461 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642669|gb|EFY39259.1| hypothetical protein SEEM954_08582 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647958|gb|EFY44430.1| hypothetical protein SEEM054_15121 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650708|gb|EFY47109.1| hypothetical protein SEEM675_00280 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652891|gb|EFY49228.1| hypothetical protein SEEM965_09839 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657206|gb|EFY53486.1| hypothetical protein SEEM19N_14452 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662306|gb|EFY58521.1| hypothetical protein SEEM801_06228 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666841|gb|EFY63017.1| hypothetical protein SEEM507_05993 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672111|gb|EFY68226.1| hypothetical protein SEEM877_04625 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675833|gb|EFY71905.1| hypothetical protein SEEM867_04673 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681751|gb|EFY77777.1| hypothetical protein SEEM180_13742 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684054|gb|EFY80063.1| hypothetical protein SEEM600_14844 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193326|gb|EFZ78541.1| hypothetical protein SEEM581_19668 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197683|gb|EFZ82816.1| hypothetical protein SEEM501_14961 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200743|gb|EFZ85814.1| hypothetical protein SEEM460_14930 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207252|gb|EFZ92204.1| hypothetical protein SEEM020_16655 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211454|gb|EFZ96295.1| hypothetical protein SEEM6152_00405 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218500|gb|EGA03208.1| hypothetical protein SEEM0077_08820 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221017|gb|EGA05449.1| hypothetical protein SEEM0047_14034 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225993|gb|EGA10212.1| hypothetical protein SEEM0055_20581 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231673|gb|EGA15785.1| hypothetical protein SEEM0052_06395 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236078|gb|EGA20156.1| hypothetical protein SEEM3312_17409 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239500|gb|EGA23549.1| hypothetical protein SEEM5258_18857 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243906|gb|EGA27917.1| hypothetical protein SEEM1156_17632 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249269|gb|EGA33186.1| hypothetical protein SEEM9199_02187 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250488|gb|EGA34371.1| hypothetical protein SEEM8282_08477 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258942|gb|EGA42594.1| hypothetical protein SEEM8283_01562 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260187|gb|EGA43810.1| hypothetical protein SEEM8284_01027 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265306|gb|EGA48803.1| hypothetical protein SEEM8285_17297 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270528|gb|EGA53974.1| hypothetical protein SEEM8287_12833 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 182 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I ++ R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A + Sbjct: 8 IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVALDIP 62 Query: 69 I 69 Sbjct: 63 F 63 >gi|282852578|ref|ZP_06261920.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556320|gb|EFB61940.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 334 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 ++ + I + +++NL+ GLA K + + +K + P E I + Sbjct: 2 RLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSI-----PDIEKIVNLSKLFG 55 >gi|262402586|ref|ZP_06079147.1| putative transcriptional regulator [Vibrio sp. RC586] gi|262351368|gb|EEZ00501.1| putative transcriptional regulator [Vibrio sp. RC586] Length = 102 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 3/74 (4%) Query: 6 HKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 HK I + ++ +T L + G++P+S + +GR P ++ ++ Sbjct: 2 HKDNPIPTRLKEARKKAGITQKDLGIRIGMEPSSASGRMNHYEKGR-HVPDLGTLERMAE 60 Query: 64 ATNETICQLLDLPF 77 N + Sbjct: 61 ELNVPLNYFFCRNE 74 >gi|258653312|ref|YP_003202468.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556537|gb|ACV79479.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 80 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 5/65 (7%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 ++ + + +T LA G+ + +R PS +I Sbjct: 5 LFNRLAVLRAERGITRRQLAEAVGVHYQTVGYLERGEY-----SPSLVLALRIAEYFEMP 59 Query: 69 ICQLL 73 + Q+ Sbjct: 60 VEQVF 64 >gi|229100213|ref|ZP_04231113.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] gi|228683255|gb|EEL37233.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] Length = 114 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + ++ + +LT S LA L + + + P +++ I + N + Sbjct: 5 GQTLKQLRKSRDLTQSELAEILNLSQSQIKNWETGRFQ-----PDIQTLASIASFFNVS 58 >gi|225012792|ref|ZP_03703226.1| plasmid maintenance system antidote protein, XRE family [Flavobacteria bacterium MS024-2A] gi|225003066|gb|EEG41042.1| plasmid maintenance system antidote protein, XRE family [Flavobacteria bacterium MS024-2A] Length = 136 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + ++ + E ++L + A K + +S + + PS E I KI Sbjct: 1 MLNIDHFLKRLESLMENNHLNATAFAEKIDVQRSSVSHILS-----KRNKPSLEFILKIN 55 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL 93 E + L L + + + Sbjct: 56 EHFEEADLEWLLLGEKQDQEKHPTLLKEKVE 86 >gi|194335906|ref|YP_002017700.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] gi|194308383|gb|ACF43083.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] Length = 91 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 +I E + + +R LT LA K ++ ++ + + R S Sbjct: 30 RIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSEDIRLSTLS 76 >gi|189465130|ref|ZP_03013915.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM 17393] gi|218131566|ref|ZP_03460370.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697] gi|189437404|gb|EDV06389.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM 17393] gi|217986235|gb|EEC52573.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697] Length = 117 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 6/106 (5%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M + ++ I E + ++ E T +A+ G++ ++++ + G R + + + Sbjct: 1 MKTI-NQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYE-----GGTREVPYDILER 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 + L + I L F Sbjct: 55 LSNLFGCEPFILFEDNIQADNEIMATAFRISDLEDGDLKEIANFKD 100 >gi|170756399|ref|YP_001781169.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121611|gb|ACA45447.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 370 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I E I R+ + +T LA G+ + +K + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGAS 43 >gi|153941295|ref|YP_001390879.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152937191|gb|ABS42689.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318944|gb|ADF99321.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] Length = 370 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 I E I R+ + +T LA G+ + +K + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGAS 43 >gi|9632965|ref|NP_049993.1| cI-like repressor [Streptococcus phage Sfi21] gi|5524046|gb|AAD44098.1|AF115103_28 orf127 gp [Streptococcus phage Sfi21] gi|2292761|emb|CAA64934.1| cI-like repressor [Streptococcus phage Sfi21] Length = 127 Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 20/44 (45%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 ++ +I I + +++ S LA KAG+ ++ ++ Sbjct: 12 MRNNDEIISLIKSYLDNSSMSMSELANKAGISKSTLSRYLSGSR 55 >gi|330996840|ref|ZP_08320709.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila YIT 11841] gi|329572283|gb|EGG53942.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila YIT 11841] Length = 117 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 6/105 (5%) Query: 3 SFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 + +I E + ++ E T +A+ G++ ++++ + G R + + +I Sbjct: 1 MRTINQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYE-----GGTREVPYDILERI 55 Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106 L + I L F Sbjct: 56 SNMFGCEPFILFEDNIQADNEIMATAFRISDLEDNDLKEIANFKD 100 >gi|326385716|ref|ZP_08207345.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM 19370] gi|326209695|gb|EGD60483.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM 19370] Length = 135 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 5/94 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I I + L+ LA + G+ +R R P + + + Sbjct: 8 IGTRIAEVRRLKGLSQVQLAEELGISKPGLANYERGF-----RVPPASLVADLCEKHGVS 62 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 LL + + + L + G Sbjct: 63 AGWLLLGEGAIFTPDLGQVHQRALATAWAYLTRG 96 >gi|323126408|gb|ADX23705.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 83 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I +D + + +T LA K G+ + + + +G R+ + I K+L Sbjct: 10 DDIHVTLDSLLKAKGITSKELAEKIGITEANLSILRTGKAKG-IRFGTLSKICKVLDCQP 68 Query: 67 ETICQLLDLPF 77 + + Sbjct: 69 GDLLEYTPPTD 79 >gi|315647563|ref|ZP_07900665.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315277002|gb|EFU40343.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 184 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 6/69 (8%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M H + + + E+ L+ +A G+ T + +R PS +++K Sbjct: 1 MKPI-HLILAHNLKSLREQRKLSLDKVAELTGISKTMLGQIERGES-----SPSITTVWK 54 Query: 61 ILAATNETI 69 I + Sbjct: 55 IANGLKLSF 63 >gi|313888356|ref|ZP_07822026.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845636|gb|EFR33027.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 367 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 5/113 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 KI E I + + +T LA + S +K + P + K+ N Sbjct: 3 KIGENILQKRKERGITQEELAEFMMVTKASVSKWETGQS-----HPDILLLPKLATFFNI 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 ++ +L+ +K G FD ++ + Sbjct: 58 SVDELIGYDPGLSSAQIQKFYIDLENRVSDEGMDSIFDDIKIKIKQYYSCFEL 110 >gi|307066675|ref|YP_003875641.1| hypothetical protein SPAP_0045 [Streptococcus pneumoniae AP200] gi|306408212|gb|ADM83639.1| hypothetical protein SPAP_0045 [Streptococcus phage PhiSpn_200] Length = 117 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + + E L+ +A++ G+ + + +R G E I K + Sbjct: 4 RLKELREELCLSVGQMAKETGVSQNTIHLYERG---GYPSIKQIEMIAKTYDVNPAWLVG 60 Query: 72 LLDLPFSD 79 +D Sbjct: 61 WIDDEMMH 68 >gi|295094134|emb|CBK83225.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] gi|295104068|emb|CBL01612.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 279 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + + H +T + LA + G ++ ++ + G+ STE + +I Sbjct: 9 NIRQRMQELMKEHKITQAQLATRIGSTESAISRF----VSGKTDKISTEHLLRIAKVFEV 64 Query: 68 T 68 + Sbjct: 65 S 65 >gi|295092258|emb|CBK78365.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 278 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 I + + + + H +T + LA + G ++ ++ + G+ STE + +I Sbjct: 9 NIRQRMQELMKEHKITQAQLATRIGSTESAISRF----VSGKTDKISTEHLLRIAKVFEV 64 Query: 68 T 68 + Sbjct: 65 S 65 >gi|291531647|emb|CBK97232.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 136 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 8/131 (6%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 + + LT A G+ + ++ + R E K+ I L Sbjct: 7 VKKERRAKGLTQQQFADMLGVSLRTITNYEKGESYPKQR----EIYGKMAEILGVDINYL 62 Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132 L +K G + + + E+ Y Sbjct: 63 LTENEEFYINANEKYGATGAQQAKALMQEV----TGLFAGGELDQDDMDEMMKAIQDAYW 118 Query: 133 IQTQDTRHKTQ 143 I + R Sbjct: 119 IAKEKNRKYVS 129 >gi|291287525|ref|YP_003504341.1| plasmid maintenance system antidote protein, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884685|gb|ADD68385.1| plasmid maintenance system antidote protein, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 370 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 5/82 (6%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E + + + ++ LA + GL P + N+ + PS E+ K + Sbjct: 18 GETLAELLDEREMSQKELALRTGLSPKAINEIVKGKA-----LPSRETADKFEPIFGLSA 72 Query: 70 CQLLDLPFSDGRTTEKKEKEIP 91 +D + +K Sbjct: 73 NFWMDKSNRYMDYISEAKKRHE 94 >gi|251781615|ref|YP_002995916.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390243|dbj|BAH80702.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 89 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 I +D + + +T LA K G+ + + + +G R+ + I K+L Sbjct: 16 DDIHVTLDSLLKAKGITSKELAEKIGITEANLSILRTGKAKG-IRFGTLSKICKVLDCQP 74 Query: 67 ETICQLLDLPF 77 + + Sbjct: 75 GDLLEYTPPTD 85 >gi|302876393|ref|YP_003845026.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302579250|gb|ADL53262.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 118 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 9/106 (8%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 S K + ++ + +LT A K G+ + +R +G + + I K+ Sbjct: 1 MLSEK-----LKQIRKEMHLTQQEFADKLGISRGYYCDMERGRNKGT----NVKVISKLS 51 Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108 T + + +D + L+ G + + Sbjct: 52 DVTGKPMEYFVDKDTELKQYDVLDSALDMLIDKGYVEDDGEINDNM 97 >gi|255103045|ref|ZP_05332022.1| DNA-binding protein [Clostridium difficile QCD-63q42] Length = 108 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 E I+ + + LT L++ +G+ + +K G + P E++ I + T+ Sbjct: 3 LEKINELRKERGLTSEQLSKLSGVPKGTLDKIL----TGVTKDPKLETLKSIARVLDCTL 58 Query: 70 CQLLDLP 76 D P Sbjct: 59 DDFDDKP 65 >gi|254166541|ref|ZP_04873395.1| Helix-turn-helix domain protein [Aciduliprofundum boonei T469] gi|197624151|gb|EDY36712.1| Helix-turn-helix domain protein [Aciduliprofundum boonei T469] Length = 230 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 18/186 (9%) Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 + + E ++ LAR G+ + + + GR + P ++ K + A E Sbjct: 24 GATMRKWREMFGISQQELARYLGMSSSVISDYE----SGRRKSPGVGTVRKFVNALIEID 79 Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129 +T +E + + FP S F + N + Sbjct: 80 EAKGGEKVKQLSSTYGEEAILDMGEFPYQISVEDFMDLIDA--KITNEGEFKRQIYGYTI 137 Query: 130 IYAIQTQDT-----RHKTQDTSMLPL------YRKGDILILNSAIQVNCGDRLLIKPRT- 177 + +++ + S+ Y ++ A + + + PR Sbjct: 138 LDSLKAILHYSSFDYLRVYGWSIDRALIFTGVYYGRSPMVAIRAHPLKPSAVVYVSPRKV 197 Query: 178 GDIVAK 183 ++ K Sbjct: 198 DELAIK 203 >gi|191636942|ref|YP_001986108.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|190711244|emb|CAQ65250.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|327380969|gb|AEA52445.1| hypothetical protein LC2W_0109 [Lactobacillus casei LC2W] gi|327384145|gb|AEA55619.1| hypothetical protein LCBD_0119 [Lactobacillus casei BD-II] Length = 373 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 14/39 (35%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46 + I ++ +T LA G+ S +K + Sbjct: 4 NVGAVISAHRKQKGITQQALADFVGVSKASVSKWETGQS 42 >gi|157370471|ref|YP_001478460.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157322235|gb|ABV41332.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 187 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + + + + + A G+ + +R P+ +++K Sbjct: 1 MQELSG-HLAQTLRSLRSQRGWSLAQAAENTGVSKAMLGQIERGES-----SPTVATLWK 54 Query: 61 ILAATN 66 I N Sbjct: 55 IATGFN 60 >gi|121607711|ref|YP_995518.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121552351|gb|ABM56500.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 171 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 6/127 (4%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M++ +I +A+ LT LAR +GL ++ N + S Sbjct: 1 MSTL--DEIGKAVRVRRTEMGLTQDLLARLSGLSRSTVNTVENRS----IANLSIAKAVA 54 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120 +L + ++ ++ S R + + T Sbjct: 55 LLESIGLSMNVNVNAARSSSRKNAPPSRSAMERAAATASISYGQAMTAKQLEVALLTGEA 114 Query: 121 PEIRSPH 127 P PH Sbjct: 115 PPRIRPH 121 >gi|28379011|ref|NP_785903.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] gi|28271849|emb|CAD64754.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] Length = 120 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 5/99 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + ++ +LT LA + ++ + R S + + K+ T Sbjct: 3 IGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESD-----RRSVSNDDLIKLSDYFGVT 57 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 LL + EK K++ GS + Sbjct: 58 TDYLLGKNGTPKWANEKDTKDLQDFLDANEGSMTYGGED 96 >gi|260060996|ref|YP_003194076.1| DNA-binding protein [Robiginitalea biformata HTCC2501] gi|88785128|gb|EAR16297.1| DNA-binding protein [Robiginitalea biformata HTCC2501] Length = 64 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 I + N T LA G+ + N ++ + P+ I ++ Sbjct: 5 IRVLRAEKNWTQEQLASAIGVSRQTINAIEKEKFD--PSLPTAFRIARLFEKP 55 >gi|84684774|ref|ZP_01012674.1| hypothetical protein 1099457000245_RB2654_02659 [Maritimibacter alkaliphilus HTCC2654] gi|84667109|gb|EAQ13579.1| hypothetical protein RB2654_02659 [Rhodobacterales bacterium HTCC2654] Length = 109 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 4/106 (3%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E + R+ + N + +A G+ + ++ GR+R PS E + K+ + Sbjct: 2 EIGERLMRLRQSSNQSLQQVADAVGVSKAHVWELEK----GRSRNPSFELVRKLASHYGV 57 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113 +I L K + L + + Sbjct: 58 SIDVLTGTAPEPAPEDIKVGRMHRDLESLSKRDRAIVEELIASMKA 103 >gi|47564457|ref|ZP_00235502.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47558609|gb|EAL16932.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 374 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 5/99 (5%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I + I + +T LA G+ S +K + +P + + + N + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107 I +L+ K F Sbjct: 61 IDELICYTPQMEPEDIKDLYHRLAEAFSERPFDEVMIEC 99 >gi|327396552|dbj|BAK13973.1| putative HTH-type transcriptional regulator YdcN [Pantoea ananatis AJ13355] Length = 183 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S I + R +R LT + +AR+AG+ ++ ++ + P E+++ Sbjct: 1 MMSTPIDIIARGLVRERQRAGLTLAEVARRAGIAKSTLSQLEAGNGN-----PGIETLWS 55 Query: 61 ILAATNETI 69 + A N Sbjct: 56 LCVALNIPF 64 >gi|325678341|ref|ZP_08157963.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109962|gb|EGC04156.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 497 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 42/164 (25%), Gaps = 10/164 (6%) Query: 3 SFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST---ES 57 ++ +I I + E + T LA T+ ++ G G S Sbjct: 1 MLTNDNNRIGNNIRSLREAYGETQQQLADAINTTRTNIINYEKHGY-GNPEIISAIAKRY 59 Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117 + + L + + + E P++ + F++ ++ Sbjct: 60 MVSVYELLYCDFSGLKKINYDKNVFWKNLEIFFPIISSEKALKNSDFNTAYILHKKIYSK 119 Query: 118 V---GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158 V I ++ S D +I Sbjct: 120 FKDSDVTNIWEECMDDFSECFDKYLDVITSDSNEN-LSYDDYVI 162 >gi|315574084|gb|EFU86275.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309B] Length = 79 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++E I +A++ L+ LA K L S K+ P E++ K+ Sbjct: 3 LFERISYLAKKQGLSVFDLAEKLNLSRNSIYSWKK-------SSPKAETLEKVAEYF 52 >gi|315171648|gb|EFU15665.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX1342] gi|315582455|gb|EFU94646.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309A] Length = 113 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++E I +A++ L+ LA K L S K+ P E++ K+ Sbjct: 3 LFERISYLAKKQGLSVFDLAEKLNLSRNSIYSWKK-------SSPKAETLEKVAEYF 52 >gi|313623977|gb|EFR94076.1| signal peptidase I [Listeria innocua FSL J1-023] Length = 180 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198 SM+P D +I+N +VN D ++ + G K +I G +++ + Sbjct: 34 ILVDGISMMPTLHSDDRVIINRFGKVNRFDVIVFREADGKEYIKRVIGLPGDTVEYKAD 92 >gi|303326711|ref|ZP_07357153.1| BamHI control element [Desulfovibrio sp. 3_1_syn3] gi|302862699|gb|EFL85631.1| BamHI control element [Desulfovibrio sp. 3_1_syn3] Length = 83 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 K+ A+ E +++ LA +AGL T ++ R S +I KI A Sbjct: 13 KQFGAALGAKREALHISQEKLAERAGLHRTYIGGVEQG-----RRNLSLLNIVKIATALG 67 Query: 67 ETICQLL 73 + Sbjct: 68 VNPEEFF 74 >gi|295133194|ref|YP_003583870.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294981209|gb|ADF51674.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 152 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61 T SH I I R+ E + LA + G+ S + ++ E + K+ Sbjct: 17 TKTSH--IGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSE---HIEDEKLERVAKV 71 Query: 62 L 62 L Sbjct: 72 L 72 >gi|291084897|ref|YP_003495180.1| gp39 [Mycobacterium phage Ardmore] gi|262262733|gb|ACY39921.1| gp39 [Mycobacterium phage Ardmore] Length = 119 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 +W+ + + ER + + L+R++G+ ++ + +RWP+ K+ A Sbjct: 50 VWQELRIIRERTGWSSAELSRESGVSAPYLSQLENG-----DRWPNATVTKKLAVALKVP 104 Query: 69 ICQLLDLPFSDGRTT 83 + L Sbjct: 105 VSVLERPAEQKNPAA 119 >gi|283787426|ref|YP_003367291.1| DNA binding protein [Citrobacter rodentium ICC168] gi|282950880|emb|CBG90557.1| putative DNA binding protein [Citrobacter rodentium ICC168] Length = 182 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 I +++ R +R L+ + +AR+AG+ ++ ++ + PS E+++ + A + Sbjct: 8 IAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVALDIP 62 Query: 69 I 69 Sbjct: 63 F 63 >gi|257867799|ref|ZP_05647452.1| signal peptidase I [Enterococcus casseliflavus EC30] gi|257874126|ref|ZP_05653779.1| signal peptidase I [Enterococcus casseliflavus EC10] gi|257876690|ref|ZP_05656343.1| signal peptidase I [Enterococcus casseliflavus EC20] gi|257801882|gb|EEV30785.1| signal peptidase I [Enterococcus casseliflavus EC30] gi|257808290|gb|EEV37112.1| signal peptidase I [Enterococcus casseliflavus EC10] gi|257810856|gb|EEV39676.1| signal peptidase I [Enterococcus casseliflavus EC20] Length = 182 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%) Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM ++GD++++ + D ++ + G K +I G S+ Sbjct: 36 VPVEGNSMEGTLQQGDMVVIEKISPIQRFDVVVFQLPDGSTYIKRVIGLPGESV 89 >gi|227518306|ref|ZP_03948355.1| possible bacteriophage transcriptional regulator [Enterococcus faecalis TX0104] gi|227074243|gb|EEI12206.1| possible bacteriophage transcriptional regulator [Enterococcus faecalis TX0104] Length = 68 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65 ++E I +A++ L+ LA K L S K+ P E++ K+ Sbjct: 3 LFERISYLAKKQGLSVFDLAEKLNLSRNSIYSWKK-------SSPKAETLEKVAEYF 52 >gi|222081494|ref|YP_002540857.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221726173|gb|ACM29262.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 394 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 5/101 (4%) Query: 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 + +++ E + E T + A G+ T+ ++ R + ++ Sbjct: 8 LTQEELGERLRLARESTGKTQADAAEAIGVARTTLVAMEKGQ-----RRVKIGEMQQLAR 62 Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104 T L+ K K P + + Sbjct: 63 LYGTTANALMRKESVHIELVPKFRKLAENEERPVAEAAELM 103 >gi|171317225|ref|ZP_02906424.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171097600|gb|EDT42435.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 203 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + ++ E I R+ LT L+R AG+ + ++ +R Sbjct: 22 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANP 65 >gi|170699355|ref|ZP_02890402.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170135727|gb|EDT04008.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 203 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%) Query: 5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48 + ++ E I R+ LT L+R AG+ + ++ +R Sbjct: 22 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANP 65 >gi|148557685|ref|YP_001265267.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502875|gb|ABQ71129.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 490 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 5/94 (5%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71 + R+ E NL LA G+ + N+ ++ R + + KI AA + Sbjct: 33 RLKRLREERNLKQVELANALGISSSYLNQLEQNQ-----RPLTVPVLLKINAAFGIDVQL 87 Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105 + + T + + Sbjct: 88 FSEDEEARLITELRDALAEGSESVSIAEIRELAM 121 >gi|86751307|ref|YP_487803.1| XRE family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574335|gb|ABD08892.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris HaA2] Length = 481 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 7/94 (7%) Query: 1 MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 M S KK + R+ ++ L+ + +A G+ P+ N +R R + + + Sbjct: 1 MAGESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQ-----RPVTAQIL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92 ++ + + L + PL Sbjct: 56 LRLAETYDLDLRDLATADEDRFFAELNEIFSDPL 89 >gi|38049246|gb|AAR10417.1| putative repressor protein [Enterococcus faecium] Length = 63 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 I + ++ +T LA++ G+ + N + + P+ E FK+ + +L Sbjct: 5 IKAIRKKLGITQEQLAKECGVVRQTINCIENDKYD-----PTLELAFKLSKMLKVKVDEL 59 Query: 73 LDLP 76 Sbjct: 60 FIYE 63 >gi|78189814|ref|YP_380152.1| XRE family transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78172013|gb|ABB29109.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii CaD3] Length = 100 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63 I + LT LA K G + +K + E R ++ KI+ Sbjct: 42 IQQARLEKGLTQEELAEKCGTNKGYISKIENNIKEVR-----VSTLQKIVE 87 >gi|72080368|ref|YP_287426.1| signal peptidase I [Mycoplasma hyopneumoniae 7448] Length = 146 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 + SM P + G + +N+ + D ++ I+ K L+ G +++ Sbjct: 30 LINVEGNSMFPTLKNGQQIFINNVKKPQRNDVVV-FKYKDKILIKRLVGIPGDKLEV 85 >gi|54019987|ref|YP_115543.1| signal peptidase I [Mycoplasma hyopneumoniae 232] gi|53987160|gb|AAV27361.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] gi|144575241|gb|AAZ53403.2| signal peptidase I [Mycoplasma hyopneumoniae 7448] Length = 160 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195 + SM P + G + +N+ + D ++ I+ K L+ G +++ Sbjct: 44 LINVEGNSMFPTLKNGQQIFINNVKKPQRNDVVV-FKYKDKILIKRLVGIPGDKLEV 99 >gi|326803357|ref|YP_004321175.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651652|gb|AEA01835.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 73 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 5/41 (12%), Positives = 13/41 (31%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 + + + L+ LA G+ S + + + Sbjct: 9 NRLKTIRKEKGLSQQALADMIGVSRNSISSIETGQFNPTAK 49 >gi|310766355|gb|ADP11305.1| hypothetical protein EJP617_16240 [Erwinia sp. Ejp617] gi|310766360|gb|ADP11310.1| hypothetical protein EJP617_16290 [Erwinia sp. Ejp617] gi|310768308|gb|ADP13258.1| hypothetical protein EJP617_35770 [Erwinia sp. Ejp617] Length = 129 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 5/93 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + + +H L+ +A G+ S+ K + + PS + + KI A + + Sbjct: 15 ERLFELRRQHGLSQQAMADAVGIHANSWKKYETGQAQ-----PSIDILKKIATALHVSTD 69 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 LL E + ++ P Sbjct: 70 FLLFDAHERVPEGELSLQFEAIIQLPEEEQNVV 102 >gi|295103367|emb|CBL00911.1| signal peptidase I, bacterial type [Faecalibacterium prausnitzii SL3/3] Length = 196 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193 + SM P DI++L + + G+ ++ K +I + G I Sbjct: 58 VLQVSGDSMYPTLNDKDIILLVKSNHIENGELC-GFYWQNKLLLKRIIGQPGDVI 111 >gi|293376903|ref|ZP_06623120.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644449|gb|EFF62542.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 192 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 MT + E I + + L+ L+ K + + K + + ++I K Sbjct: 1 MTM----TLGEKIKKYRQAGGLSQEQLSEKLSVSRQAVTKWESDKGIPDIH--NLQAIAK 54 Query: 61 ILA 63 + Sbjct: 55 LFN 57 >gi|291619732|ref|YP_003522474.1| YdcN [Pantoea ananatis LMG 20103] gi|291154762|gb|ADD79346.1| YdcN [Pantoea ananatis LMG 20103] Length = 183 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S I + R +R LT + +AR+AG+ ++ ++ + P E+++ Sbjct: 1 MMSTPIDIIARGLVRERQRAGLTLAEVARRAGIAKSTLSQLEAGNGN-----PGIETLWS 55 Query: 61 ILAATNETI 69 + A N Sbjct: 56 LCVALNIPF 64 >gi|288933192|ref|YP_003437251.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290511996|ref|ZP_06551364.1| transcriptional Regulator [Klebsiella sp. 1_1_55] gi|288887921|gb|ADC56239.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289775786|gb|EFD83786.1| transcriptional Regulator [Klebsiella sp. 1_1_55] Length = 99 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 6/43 (13%), Positives = 18/43 (41%) Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54 A++ + E ++ + +A G+ + K ++ + R Sbjct: 31 ALNLLREELQMSQTEMAAAMGVKQPTIAKMEQADNDPRLSTLK 73 >gi|262043413|ref|ZP_06016538.1| HTH-type transcriptional regulator RdgA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039239|gb|EEW40385.1| HTH-type transcriptional regulator RdgA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 70 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 1/68 (1%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + N+T LA G+ + N+ + I R R+ S Sbjct: 3 LATRVKERRKELNMTQVALAELTGVSQQAINRIESGVIS-RPRYLLEISAALQCDPNWLL 61 Query: 69 ICQLLDLP 76 Q D Sbjct: 62 HGQPTDNK 69 >gi|229529008|ref|ZP_04418398.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|229332782|gb|EEN98268.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|327484506|gb|AEA78913.1| Transcriptional regulator yidN, Cro/CI family [Vibrio cholerae LMA3894-4] Length = 181 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 42/155 (27%), Gaps = 16/155 (10%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I + ++ + L+ A+ G+ + +R P+ +++KI + Sbjct: 9 QIANQLKKLRKSRGLSLDTTAQLTGVSKAMLGQIERGES-----SPTIATLWKIASGLEA 63 Query: 68 TI-----CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122 + L + K L + F+ + + P Sbjct: 64 SFSAFFANDPQLLSSERSFPDDPNMKVHTLFPYAADTGLEIFEITLLDHHQ---QMSSPH 120 Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157 IY ++ K + + + Sbjct: 121 ALGVIEYIYVLEG---VMKVFFDEQWHELQPREHI 152 >gi|229042877|ref|ZP_04190612.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] gi|228726479|gb|EEL77701.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] Length = 149 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 E + E+ N + + LA K + S +K + +PS E I + TI Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59 Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95 +LL + + K + + Sbjct: 60 ELLRSDEELTQKIIEDSKRLAYPKW 84 >gi|226325615|ref|ZP_03801133.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758] gi|225205739|gb|EEG88093.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758] Length = 279 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 5/70 (7%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 +I E I + LT +A + + NK ++ +P + I Sbjct: 2 QIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNT-----YPDISLLPAIARLLKI 56 Query: 68 TICQLLDLPF 77 + +L Sbjct: 57 DMNELFSFRE 66 >gi|225018996|ref|ZP_03708188.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] gi|224948221|gb|EEG29430.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] Length = 174 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 6/45 (13%), Positives = 17/45 (37%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52 + ++ ++ L+ +A K G+ + +K + R Sbjct: 22 NLGNSLFHARKKCGLSQEEVAEKLGVSRQTISKWETDETIPDIRQ 66 >gi|221210520|ref|ZP_03583500.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia multivorans CGD1] gi|221169476|gb|EEE01943.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia multivorans CGD1] Length = 203 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 6/144 (4%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ E I R+ LT L+R AG+ + ++ +R P+ +++ A Sbjct: 25 RVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 79 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSP 126 T+ +L P + +IP L + +W + +P + Sbjct: 80 TLDELFSQPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPIDLAGKFEWYELTLPGGGAL 139 Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL 150 + + T++ Q T + Sbjct: 140 VSNAHEPGTREHLTVLQGTMEIEA 163 >gi|241518608|ref|YP_002979236.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863021|gb|ACS60685.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 72 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 + + + + L+ LA +A +D T + +R PS E + ++ Sbjct: 1 MEIRETFARNLRTLRQARKLSQEELAHRASVDRTYISSLERCVY-----SPSIEVLDRLA 55 Query: 63 AATNETICQ 71 A Sbjct: 56 AVLGVEPAD 64 >gi|166031491|ref|ZP_02234320.1| hypothetical protein DORFOR_01188 [Dorea formicigenerans ATCC 27755] gi|166028896|gb|EDR47653.1| hypothetical protein DORFOR_01188 [Dorea formicigenerans ATCC 27755] Length = 69 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66 +K+ + + E L+ G+ ++ + + R P + + N Sbjct: 2 EKLAIRLKELREERGLSQMEAGAALGVSRSTIAGYE-----TKGREPDVHMLITMADFYN 56 Query: 67 ETICQ 71 ++ Sbjct: 57 VSMDY 61 >gi|153217261|ref|ZP_01951025.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|124113716|gb|EAY32536.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] Length = 207 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 54/178 (30%), Gaps = 15/178 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 K+ + I + R +T +++ GL ++ +K + I P+ +++ K+ Sbjct: 27 KLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLQI 81 Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127 + QL + P T + N +P Sbjct: 82 DMPQLFEPPKKIVATGRRDITRKE----AGKPHPTQTYEHELLATQLSNKKMMPFKSRVR 137 Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDIVA 182 + + + L L +G+++ + + GD + G ++ Sbjct: 138 ARAF--EEYSDWVRHDGEEFL-LILEGEVMFYSEFYEPVNLVEGDSVYYDANMGHMLV 192 >gi|111220943|ref|YP_711737.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a] gi|111148475|emb|CAJ60147.1| Putative HTH-type transcriptional regulator [Frankia alni ACN14a] Length = 498 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 4/95 (4%) Query: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68 + + + + H LT LA + G D + +K + GR ++ I + Sbjct: 20 VGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVE----SGRRAIHDISTLRHIARNLALS 75 Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103 + P + P + + Sbjct: 76 PEDVGLAPGAMADRRRDTGPRSPAAEQVAASQRAW 110 >gi|15668766|ref|NP_247565.1| hypothetical protein MJ_0586 [Methanocaldococcus jannaschii DSM 2661] gi|2496059|sp|Q58006|Y586_METJA RecName: Full=Uncharacterized HTH-type transcriptional regulator MJ0586 gi|1591294|gb|AAB98578.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 170 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55 + + I E+ L+ LA+K + ++ K +R+ +E + Sbjct: 80 PML-REDYGDVIREAREKRGLSIEELAKKLKMKASTLQKFERYELEPNEKEIKI 132 >gi|326381708|ref|ZP_08203402.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326199955|gb|EGD57135.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 96 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 15/82 (18%) Query: 2 TSFSHKKI----------WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51 T + ++I A+ + +T LA +G+ + ++ + Sbjct: 6 THLTREQIALRDVRRRAFGAALAQARLTAGMTQDELAAASGVSRPTISRLELGTS----- 60 Query: 52 WPSTESIFKILAATNETICQLL 73 S++ ++ + A T + Sbjct: 61 SISSDRVWDLAEALGTTPADIY 82 >gi|325695675|gb|EGD37574.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK150] Length = 74 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62 KI + + E +T LA + G+ + + PS E KI Sbjct: 1 MARESKIITNLKYIRESKGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55 Query: 63 AATN 66 N Sbjct: 56 QVFN 59 >gi|323139594|ref|ZP_08074638.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] gi|322395144|gb|EFX97701.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] Length = 205 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Query: 8 KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67 ++ + R+ + +NL+ S L++++G+ + ++ +R P+ +I+++ A + Sbjct: 22 QLGATVQRLRKAYNLSLSELSQQSGVAKSIISQIERNETN-----PTLATIWRLAQALDV 76 Query: 68 T 68 + Sbjct: 77 S 77 >gi|312794333|ref|YP_004027256.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181473|gb|ADQ41643.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 145 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 3 SFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58 KI +A I ++ E T + L AG++PTS +++R E S ++ Sbjct: 1 MAKKNKIAKALGLKIKKLREEKGWTINQLGLYAGVNPTSIMRAERGESE-----LSLGNL 55 Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102 +I A + L++ +++ P Sbjct: 56 LRIAKALKVDLNTLVEESMEQIVLGDEELVPNEKDKTPDIYEII 99 >gi|312881391|ref|ZP_07741188.1| transcriptional regulator, Cro/CI family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309371031|gb|EFP98486.1| transcriptional regulator, Cro/CI family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 176 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 10/110 (9%), Positives = 34/110 (30%), Gaps = 7/110 (6%) Query: 1 MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60 M S + + + L+ S LA AG+ ++ ++ ++ P+ +++++ Sbjct: 1 MEKPSLDILGRNLQSIRVSKGLSLSQLAHDAGIAKSNLSRIEQGSGN-----PTLDTLWR 55 Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110 + + + + + + + P Sbjct: 56 LAIQLDVPF--GCLVASMNTAIGHDGVQAKLIEQGRDDPQVDAYWMSYAP 103 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.311 0.127 0.347 Lambda K H 0.267 0.0390 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,641,375,638 Number of Sequences: 14124377 Number of extensions: 63767900 Number of successful extensions: 414466 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 15387 Number of HSP's successfully gapped in prelim test: 7117 Number of HSP's that attempted gapping in prelim test: 389707 Number of HSP's gapped (non-prelim): 23372 length of query: 223 length of database: 4,842,793,630 effective HSP length: 134 effective length of query: 89 effective length of database: 2,950,127,112 effective search space: 262561312968 effective search space used: 262561312968 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 78 (34.7 bits)