BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780444|ref|YP_003064857.1| bacteriophage repressor
protein C1 [Candidatus Liberibacter asiaticus str. psy62]
         (223 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|75674664|ref|YP_317085.1| peptidase S24 [Nitrobacter winogradskyi Nb-255]
 gi|74419534|gb|ABA03733.1| peptidase S24 [Nitrobacter winogradskyi Nb-255]
          Length = 210

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 98/223 (43%), Positives = 135/223 (60%), Gaps = 13/223 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +H +IW A+DR+AER  L+PSGLAR+AGLDPT+FNKSKR   +GR RWPSTES+ K
Sbjct: 1   MVMLTHAQIWTALDRLAERAGLSPSGLARRAGLDPTTFNKSKRITSDGRERWPSTESVAK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            LAAT   I   +         TE+  K +PLL F  +G+GG+FD G FP G  W+ VG+
Sbjct: 61  ALAATGTAIDTFVQFIE----DTERAAKAVPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P                   +    SM P YR GD+++++    +  GDR+++K R G++
Sbjct: 117 P---------CVNDEHAYALEISGDSMKPAYRDGDVIVVSPGTPIRRGDRVVVKTRDGEV 167

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + K L  R  R+I+L SLN  +   T+  S++EWIARI+WASQ
Sbjct: 168 MVKELKRRTARTIELQSLNPSHANRTLPASEVEWIARIVWASQ 210


>gi|85713691|ref|ZP_01044681.1| peptidase S24 [Nitrobacter sp. Nb-311A]
 gi|85699595|gb|EAQ37462.1| peptidase S24 [Nitrobacter sp. Nb-311A]
          Length = 210

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/223 (43%), Positives = 137/223 (61%), Gaps = 13/223 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +H +IW A+DR+AER  L+PSGLAR+AGLDPT+FNKSKR   +GR RWPSTES+ K
Sbjct: 1   MVMLTHAQIWTALDRLAERAGLSPSGLARRAGLDPTTFNKSKRITSDGRERWPSTESVAK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            LAAT+  I   +         + +  + +PLL F  +G+GG+FD G FP G  W+ VG+
Sbjct: 61  ALAATDTAIDTFVQFIE----DSARAAQAVPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P +   H             +    SM P YR GD+++++    +  GDR+++K R G++
Sbjct: 117 PAVNDEH---------AYALEISGDSMKPAYRDGDVIVVSPGTPIRRGDRVVVKTRDGEV 167

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + K L  R  ++I+L SLN  +   T+  SD+EWIARI+WASQ
Sbjct: 168 MVKELKRRTAKTIELQSLNPSHANRTLPASDVEWIARIVWASQ 210


>gi|144899439|emb|CAM76303.1| Peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 212

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 9/221 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +H  IW A+D +A  + LT S LAR+AGLDPT+FNKSKR   EG+ RWPSTES+ K+L
Sbjct: 1   MLTHADIWAALDSLARDNGLTASALARRAGLDPTTFNKSKRITREGKLRWPSTESVAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            AT  ++ QLL+           K   IPL+    +G  G+FD   +P G  W+ +  PE
Sbjct: 61  DATGSSLGQLLNYIDDSLPAPVVKGATIPLIGSAQAGDRGYFDDAGYPCGGGWDEIPFPE 120

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +           +     +    SM PLYR GDI+I++ A  V  GDR+++K   G+++ 
Sbjct: 121 VGD---------SNAYALEVSGDSMEPLYRDGDIVIVSPAASVRRGDRVVVKTLEGEVMV 171

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K LI +  + I+L SLN  +P  ++   ++ W+ARILWASQ
Sbjct: 172 KQLIRQTAKRIELASLNPAHPGRSLAAEEVSWLARILWASQ 212


>gi|39933872|ref|NP_946148.1| S24 family peptidase [Rhodopseudomonas palustris CGA009]
 gi|192289291|ref|YP_001989896.1| phage repressor [Rhodopseudomonas palustris TIE-1]
 gi|39647719|emb|CAE26239.1| Peptidase family S24 [Rhodopseudomonas palustris CGA009]
 gi|192283040|gb|ACE99420.1| putative phage repressor [Rhodopseudomonas palustris TIE-1]
          Length = 210

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/223 (43%), Positives = 135/223 (60%), Gaps = 13/223 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +H +IW A+DR+AER  L+PSGLA+K+GLDPT+FNKSKR   +GR RWPSTES+ K
Sbjct: 1   MQMLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L ATN  I   + L         +  + +PLL    +GSGG+FD G FP G  W+ VG+
Sbjct: 61  ALQATNTAIDTFVQLIHDRP----RVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGL 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P I   H             +    SM P YR GDI++++ +  V+ GDR+++K   G++
Sbjct: 117 PSITDEH---------AYALEISGDSMKPAYRSGDIVVVSPSATVHRGDRVVVKTTKGEV 167

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + K L  R  + ++L SLN  +P  T+  S+IEWI RI+WASQ
Sbjct: 168 MVKELKRRTAKVVELASLNPSHPDRTLAPSEIEWIGRIVWASQ 210


>gi|13474687|ref|NP_106256.1| repressor protein CI [Mesorhizobium loti MAFF303099]
 gi|14025442|dbj|BAB52042.1| repressor protein CI [Mesorhizobium loti MAFF303099]
          Length = 212

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/221 (42%), Positives = 135/221 (61%), Gaps = 9/221 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH ++W AID +AER++L+ SGLAR+AGLD T+FNKSKR   +GR RWPSTES+ KI+
Sbjct: 1   MLSHDRVWAAIDALAERYSLSASGLARRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKII 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            AT  ++ +   L      T     + +PLL F  +G+GGFFD   FP G  W+ V +P 
Sbjct: 61  EATGASLDEFTGLIEGRMSTAPAHRRSVPLLGFAQAGAGGFFDDAGFPAGQGWDLVELPA 120

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             +               + Q  SMLPLYR GD+LI+        GDR+++K  +G+++A
Sbjct: 121 QSTE---------SSYALQVQGDSMLPLYRNGDVLIVEPGAVTRKGDRVVVKTTSGEVMA 171

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           KVL  +  +SI L+SLN  +P   + M ++EW+ARI+WASQ
Sbjct: 172 KVLDRQTVKSIALVSLNPDHPDRDIPMREVEWVARIVWASQ 212


>gi|316932334|ref|YP_004107316.1| putative phage repressor [Rhodopseudomonas palustris DX-1]
 gi|315600048|gb|ADU42583.1| putative phage repressor [Rhodopseudomonas palustris DX-1]
          Length = 210

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 13/223 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +H +IW A+DR+AER  L+PSGLA+K+GLDPT+FNKSKR   +GR RWPSTES+ K
Sbjct: 1   MQMLTHDQIWTALDRLAERSGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L ATN  I   + L         +  + +PLL    +GSGG+FD G FP G  W  +G+
Sbjct: 61  ALQATNTAIDTFVQLIHDRP----RVVQSVPLLGLAQAGSGGYFDDGGFPVGKGWEEIGL 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P I   H             +    SM P YR GDI++++ +  V+ GDR+++K   G++
Sbjct: 117 PSISDEH---------AYALQISGDSMKPAYRHGDIVVVSPSAAVHRGDRVVVKTTKGEV 167

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + K L  R  + I+L SLN  +P  T+  S++EWI RI+WASQ
Sbjct: 168 MVKELKRRTAKVIELASLNPSHPDRTLAPSEVEWIGRIVWASQ 210


>gi|92116178|ref|YP_575907.1| putative phage repressor [Nitrobacter hamburgensis X14]
 gi|91799072|gb|ABE61447.1| putative phage repressor [Nitrobacter hamburgensis X14]
          Length = 210

 Score =  211 bits (537), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 98/223 (43%), Positives = 136/223 (60%), Gaps = 13/223 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +H +IW A+DR+AER  L+PSGLARKAGLDPT+FNKSKR   +GR RWPSTES+ K
Sbjct: 1   MAMLTHAQIWTALDRLAERSGLSPSGLARKAGLDPTTFNKSKRITGDGRERWPSTESVAK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            LAAT+  I   +         T +  + +PLL F  +G+GG+FD G FP G  W+ VG+
Sbjct: 61  ALAATDTAIDTFVQFIE----DTARATQAVPLLGFAEAGAGGYFDDGGFPVGKGWDEVGL 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P +   H             +    SM P YR GD+++++    +  GDR+++K R G++
Sbjct: 117 PSVHDEH---------AYALEISGDSMKPAYRDGDVIVVSPGTSIRRGDRVVVKTRDGEV 167

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + K L  R  + I+L SLN  +   T+  SD+EWIARI+WASQ
Sbjct: 168 MVKELKRRTAKMIELQSLNPNHVNRTLAASDVEWIARIVWASQ 210


>gi|239834343|ref|ZP_04682671.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
 gi|239822406|gb|EEQ93975.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
          Length = 227

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 133/228 (58%), Gaps = 14/228 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K
Sbjct: 9   MTMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYASDGRARWPSTESLAK 68

Query: 61  ILAATNETICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           ++ AT  T  +                  +  + IPLL    +G+GG+FD   FP G  W
Sbjct: 69  VMEATGSTFDEFTRLIGGETRTPQFGEYTQDMQSIPLLGMAEAGAGGYFDDAGFPAGQGW 128

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           + V  P                   +    SMLPLYR GD LI+     +  GDR++++ 
Sbjct: 129 DIVEFPASTGEG---------VYALEVSGDSMLPLYRDGDTLIVAPNTAIRRGDRVVVRT 179

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + G+++AK+L  +  R+I+L SLN  +P    E  DIEW+ARILWASQ
Sbjct: 180 KDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESRDIEWVARILWASQ 227


>gi|90422277|ref|YP_530647.1| putative phage repressor [Rhodopseudomonas palustris BisB18]
 gi|90104291|gb|ABD86328.1| putative phage repressor [Rhodopseudomonas palustris BisB18]
          Length = 208

 Score =  209 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/221 (41%), Positives = 136/221 (61%), Gaps = 13/221 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +H +IW A+DR+AER  L+PSGLA+++GLDPT+FNKSKR   +GR RWPSTES+ K L
Sbjct: 1   MLTHDQIWTALDRLAERAGLSPSGLAKRSGLDPTTFNKSKRITNDGRERWPSTESVAKAL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           AATN      +D          +  + +PLL    +GSGG+FD G FP G  W+ VG+P 
Sbjct: 61  AATN----TAIDAFVQLIGDGPRAVQSVPLLGLAQAGSGGYFDDGGFPVGKGWDEVGLPS 116

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +   H             +    SM P YR GD+++++    +  GDR+++K R G+++ 
Sbjct: 117 VNDEH---------AYALEISGDSMKPAYRAGDVIVVSPGSPIRRGDRVVVKTRDGEVMV 167

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K L  R  ++++L+SLN  +P  T+  +++EWIARI+WASQ
Sbjct: 168 KELKRRTAKTLELLSLNPSHPDRTLAPAEVEWIARIVWASQ 208


>gi|299134039|ref|ZP_07027232.1| putative phage repressor [Afipia sp. 1NLS2]
 gi|298590786|gb|EFI50988.1| putative phage repressor [Afipia sp. 1NLS2]
          Length = 207

 Score =  209 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/221 (42%), Positives = 135/221 (61%), Gaps = 14/221 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +H +IW A+DR+A R  L+PSGLA++AGLDPT+FNKSKR   +GR RWPSTES+ K L
Sbjct: 1   MLTHDQIWTALDRLAARAGLSPSGLAKRAGLDPTTFNKSKRVTSDGRERWPSTESVAKAL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           AAT  ++   +         +  +  ++PLL F  +GSGG+FD G FP G  W+ VG+P 
Sbjct: 61  AATGISVDTFVHFIE-----SSSRSVQVPLLGFAEAGSGGYFDDGGFPVGKGWDEVGLPS 115

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +   H             +    SM P YR GD+++++ +  +  GDR+++K + G+++ 
Sbjct: 116 VNDEH---------AYALEISGDSMKPAYRDGDVIVVSPSAPIRRGDRVVVKTKDGEVMV 166

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K L  R  + I+L SLN  +   T+  S+IEWIARILWASQ
Sbjct: 167 KELRRRTQKVIELQSLNPAHSDRTLPTSEIEWIARILWASQ 207


>gi|115522745|ref|YP_779656.1| putative phage repressor [Rhodopseudomonas palustris BisA53]
 gi|115516692|gb|ABJ04676.1| putative phage repressor [Rhodopseudomonas palustris BisA53]
          Length = 208

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 13/221 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +H +IW A+DR+AER  L+PSGLA+K+GLDPT+FNKSKR   +GR RWPSTES+ K L
Sbjct: 1   MLTHDQIWTALDRLAERAGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAKAL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           AATN      +D          +  + +PLL F  +G+GG+FD G FP G  W+ VG+P+
Sbjct: 61  AATN----TAIDSFVRLIGDRARPVQSVPLLGFAQAGAGGYFDDGGFPVGKGWDEVGLPQ 116

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +   H             +    SM P YR GD+++++    V  GDR+++K   G+++ 
Sbjct: 117 VNDEH---------AYALEISGDSMKPAYRAGDVIVVSPGTPVRRGDRVVVKTNNGEVMV 167

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K L  R  ++++L SLN  +P  T+  +D+EWIARI+WASQ
Sbjct: 168 KELKRRTSKTLELASLNPSHPDRTLAPADVEWIARIVWASQ 208


>gi|319785581|ref|YP_004145057.1| peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317171469|gb|ADV15007.1| Peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 216

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 94/225 (41%), Positives = 135/225 (60%), Gaps = 13/225 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH ++W AID +AER++L+ SGLA++AGLD T+FNKSKR   +GR RWPSTES+ KI+
Sbjct: 1   MLSHDRVWAAIDALAERYSLSASGLAKRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKIM 60

Query: 63  AATNETICQLLDLPFSD----GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            AT  ++ +   L           +  +   +PLL F  +G+GGFFD   FP G  W+ +
Sbjct: 61  EATGASLDEFTGLIEGRAGASHAASVARRSSVPLLGFAQAGAGGFFDDAGFPAGQGWDLI 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +P   +               + Q  SMLPLYR GD+LI+        GDR+++K  +G
Sbjct: 121 ELPTQSTE---------SSYALQVQGDSMLPLYRNGDVLIVEPGAVTRKGDRVVVKTTSG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++AKVL  +  RSI L+SLN  +P   + M D+EW+ARI+WASQ
Sbjct: 172 EVMAKVLERQTVRSIALVSLNPDHPDRDIPMRDVEWVARIVWASQ 216


>gi|153011349|ref|YP_001372563.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
 gi|151563237|gb|ABS16734.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
          Length = 217

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/226 (42%), Positives = 131/226 (57%), Gaps = 14/226 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K++
Sbjct: 1   MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYASDGRARWPSTESLAKVM 60

Query: 63  AATNETICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
            AT  T  +                  +  + IPLL    +G+GG+FD   FP G  W+ 
Sbjct: 61  EATGSTFDEFTRLIRGGNRTPQFGEYTQDMQSIPLLGMAEAGAGGYFDDAGFPAGQGWDI 120

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           V  P                   +    SMLPLYR GD LI+     +  GDR++++ + 
Sbjct: 121 VEFPAGSGEG---------VYALEVSGDSMLPLYRDGDTLIVAPNTAIRRGDRVVVRTKD 171

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           G+++AK+L  +  R+I+L SLN  +P    E  DIEW+ARILWASQ
Sbjct: 172 GEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWVARILWASQ 217


>gi|288957020|ref|YP_003447361.1| hypothetical protein AZL_001790 [Azospirillum sp. B510]
 gi|288909328|dbj|BAI70817.1| hypothetical protein AZL_001790 [Azospirillum sp. B510]
          Length = 210

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 133/221 (60%), Gaps = 11/221 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H  IW AIDR+A +H L+ SGLAR+AGLDPT+FNKSKR   +G+ RWPSTESI K+L
Sbjct: 1   MLKHTDIWRAIDRLAAQHGLSASGLARRAGLDPTTFNKSKRTTNDGKLRWPSTESISKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            AT  ++ + + L            + +P++ +  +GS G+FD   FP G+ W+ +  P 
Sbjct: 61  DATGASLSEFVSLVGD--GAGTGPLQRVPVIGYAQAGSAGYFDDAGFPAGSGWDELLFPS 118

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +  PH             +    SM P+YR GD +I++ A Q+   DR++++ + G+++A
Sbjct: 119 LGDPH---------AYALEISGDSMEPVYRDGDTIIVSPAAQIRRNDRVVVRTKGGEVMA 169

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K LI      I+L+S+N  +P  ++ ++D+ W+ARI+WASQ
Sbjct: 170 KQLIRETATKIELLSINRAHPDRSIPLADVAWMARIIWASQ 210


>gi|154250891|ref|YP_001411715.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
 gi|154154841|gb|ABS62058.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
          Length = 214

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 11/224 (4%)

Query: 1   MT-SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M    SH ++W AID +A RH LT SGLA+ AGLDPT+FNKSKR    GR RWP+TES+ 
Sbjct: 1   MPRKLSHNRLWAAIDALAGRHGLTASGLAKAAGLDPTTFNKSKRVTAAGRPRWPNTESLA 60

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL AT  ++ +   +  +DG      ++ +PL+    +G GGFFD   FP G+ W  V 
Sbjct: 61  RILDATGSSL-EDFLVLVADGEVAFTPQRHVPLIGLAQAGRGGFFDDAGFPVGSGWEEVA 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            P+ +  H             +    SM P YR GDI++++   ++  GDR+++K    +
Sbjct: 120 FPDFKDEH---------AYALEVSGDSMEPFYRAGDIIVVSPGAEIRRGDRVVVKTAGDE 170

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           ++AKVL  +    IDL SLN  Y   +++  +I W+ARI+WASQ
Sbjct: 171 VMAKVLARKTATRIDLQSLNPAYEDRSLKPEEIVWMARIIWASQ 214


>gi|260461922|ref|ZP_05810167.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
 gi|259032169|gb|EEW33435.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
          Length = 216

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 94/225 (41%), Positives = 134/225 (59%), Gaps = 13/225 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH ++W AID +AER++L+ SGLAR+AGLD T+FNKSKR   +GR RWPSTES+ KI+
Sbjct: 1   MLSHDRVWAAIDALAERYSLSASGLARRAGLDSTAFNKSKRLSSDGRPRWPSTESLAKII 60

Query: 63  AATNETICQLLDLPFSDGRTTEK----KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            AT  ++ +   L              + + +PLL F  +G+GGFFD   FP G  W+ V
Sbjct: 61  EATGASLDEFTGLIEGRAGLVHDARDGRRRSVPLLGFAQAGAGGFFDDAGFPAGQGWDLV 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +P   +               + Q  SMLPLYR GD+LI+        GDR+++K   G
Sbjct: 121 ELPAQSTE---------SSYALQVQGDSMLPLYRNGDVLIVEPGAATRKGDRVVVKTTAG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++AKVL  +  +SI L+SLN  +P   + M ++EW+ARI+WASQ
Sbjct: 172 EVMAKVLERQTVKSISLVSLNPDHPDRDISMREVEWVARIVWASQ 216


>gi|15887830|ref|NP_353511.1| bacteriophage repressor protein C1 [Agrobacterium tumefaciens str.
           C58]
 gi|15155410|gb|AAK86296.1| bacteriophage repressor protein C1 [Agrobacterium tumefaciens str.
           C58]
          Length = 216

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 110/223 (49%), Positives = 146/223 (65%), Gaps = 9/223 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH+ IW AID +AERH LTPS LA++AGLDPTSFNKSKRFG +GR RWPSTES+ K+L
Sbjct: 1   MLSHETIWSAIDTLAERHQLTPSALAKRAGLDPTSFNKSKRFGPDGRKRWPSTESVSKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            AT  ++ Q     F   +T +    +   PLL F  +GSGGFFD G FP G  W+ V  
Sbjct: 61  EATGASVDQFFGYAFGRAQTMQPSGADNAIPLLGFAQAGSGGFFDDGGFPAGQGWDVVEF 120

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P       G+YA++        Q  SM+PLYR GDILI+     V  GDR+++K R G++
Sbjct: 121 PSSPERKQGVYALE-------VQGESMMPLYRDGDILIVEPGAPVRRGDRVVLKSRDGEV 173

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +AKVL  +  ++I+L+SLN  +P  + +M+D+EWIARI+WASQ
Sbjct: 174 MAKVLARQSPKNIELLSLNPEHPNRSFDMADVEWIARIIWASQ 216


>gi|227820746|ref|YP_002824716.1| putative peptidase, S24 family [Sinorhizobium fredii NGR234]
 gi|227339745|gb|ACP23963.1| putative peptidase, S24 family [Sinorhizobium fredii NGR234]
          Length = 217

 Score =  204 bits (519), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 107/224 (47%), Positives = 140/224 (62%), Gaps = 10/224 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH  IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR   +GR+RWPSTESI K+L
Sbjct: 1   MLSHDSIWRAIDALAERHQLSPSGLARRAGLDPTSFNKSKRQSPDGRDRWPSTESISKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            AT  TI Q + L  S    + +       IPL+ F  +G+GGFFD G FP G  W+ V 
Sbjct: 61  EATGATIDQFMALLQSGSGPSSRTGLPAAGIPLIGFAQAGAGGFFDDGGFPVGQGWDEVD 120

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            P            +      + Q  SMLPLYR GD+LI++    V  GDR+++K   G+
Sbjct: 121 FPVAA-------QSKASVYALEVQGDSMLPLYRDGDVLIVDPGASVRRGDRVVLKSCEGE 173

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           ++AK+L  +  R ++L+SLN  +P  + EM D+EWIARI+WASQ
Sbjct: 174 VMAKILARQTSRGVELLSLNPDHPNRSFEMKDVEWIARIVWASQ 217


>gi|325291874|ref|YP_004277738.1| bacteriophage repressor protein C1 [Agrobacterium sp. H13-3]
 gi|325059727|gb|ADY63418.1| bacteriophage repressor protein C1 [Agrobacterium sp. H13-3]
          Length = 216

 Score =  204 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 109/223 (48%), Positives = 146/223 (65%), Gaps = 9/223 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH+ IW AID +A+RH LTPS LA++AGLD TSFNKSKRFG +GR RWPSTES+ K+L
Sbjct: 1   MLSHETIWSAIDTLAKRHQLTPSALAKRAGLDSTSFNKSKRFGPDGRKRWPSTESVSKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            AT  ++ Q     F   +T +    +   PLL F  +GSGGFFD G FP G  W+ V  
Sbjct: 61  EATGASVDQFFGYAFGRTQTMQPSGADNAIPLLGFAQAGSGGFFDDGGFPAGQGWDVVEF 120

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P       G+YA++        Q  SM+PLYR GDILI+    QV  GDR+++K R G++
Sbjct: 121 PSSPERKQGVYALE-------VQGESMMPLYRDGDILIVEPGAQVRRGDRVVLKSRDGEV 173

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +AKVL  +  ++I+L+SLN  +P  + +M+D+EWIARI+WASQ
Sbjct: 174 MAKVLARQSPKNIELLSLNPEHPNRSFDMADVEWIARIIWASQ 216


>gi|323135593|ref|ZP_08070676.1| putative phage repressor [Methylocystis sp. ATCC 49242]
 gi|322398684|gb|EFY01203.1| putative phage repressor [Methylocystis sp. ATCC 49242]
          Length = 213

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/224 (41%), Positives = 134/224 (59%), Gaps = 12/224 (5%)

Query: 1   MTS-FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           MT   SH +IW A+D + ER+ LTPSGLARKAGLDPT+FN+SKR    GR RWPSTESI 
Sbjct: 1   MTDILSHAQIWAALDALGERYGLTPSGLARKAGLDPTTFNRSKRETASGRQRWPSTESIA 60

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K+L AT  ++ + + L  ++  ++  ++   PL+    +G+GGFFD   F  G  W+ + 
Sbjct: 61  KVLQATGASLDEFMALVSAN--SSACRKHTRPLIGLAQAGAGGFFDDAGFAIGAGWDEID 118

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           V      H             +    SM PLYR GD++I++ A  V  GDR+++K   G+
Sbjct: 119 VLADADEH---------SYALEISGDSMFPLYRDGDVVIVSPAAPVRRGDRVVVKTTDGE 169

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           I+AK L  +  R+++L S+N  YP   +   ++ WIARILWASQ
Sbjct: 170 IMAKELKRQTARTVELRSINPAYPDRVIPREEVSWIARILWASQ 213


>gi|296446773|ref|ZP_06888712.1| putative phage repressor [Methylosinus trichosporium OB3b]
 gi|296255776|gb|EFH02864.1| putative phage repressor [Methylosinus trichosporium OB3b]
          Length = 213

 Score =  203 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 11/220 (5%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +H +IW A+D + ER+ LTPSGLARKAGLDPT+FN+SKR   +G  RWPSTESI K+L 
Sbjct: 5   LTHAQIWAALDALGERYGLTPSGLARKAGLDPTTFNRSKRQTADGHLRWPSTESIAKVLQ 64

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           AT   + + + L  S G    +  +  PL+    +G GGFFD   F  G  W  + V   
Sbjct: 65  ATGAGLDEFMTLVSSKGARPSRSAR--PLIGLAQAGVGGFFDDAGFAIGAGWEEIDVLAD 122

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
              H             +    SM PLYR GDI+I++ +  V  GDR+++K   G+I+AK
Sbjct: 123 TDEH---------SYALEISGDSMAPLYRDGDIVIVSPSAPVRRGDRVVVKTIAGEILAK 173

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            L  +  ++++L SLN  +P   +   ++ W+ARILWASQ
Sbjct: 174 ELKRQTAKTVELKSLNPAFPDRVLPKEEVSWMARILWASQ 213


>gi|15964281|ref|NP_384634.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307307018|ref|ZP_07586757.1| putative phage repressor [Sinorhizobium meliloti BL225C]
 gi|307320672|ref|ZP_07600085.1| putative phage repressor [Sinorhizobium meliloti AK83]
 gi|15073458|emb|CAC45100.1| Transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306893707|gb|EFN24480.1| putative phage repressor [Sinorhizobium meliloti AK83]
 gi|306901958|gb|EFN32557.1| putative phage repressor [Sinorhizobium meliloti BL225C]
          Length = 218

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 111/225 (49%), Positives = 146/225 (64%), Gaps = 11/225 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH  IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR   +GR+RWPSTESI KIL
Sbjct: 1   MLSHDSIWRAIDALAERHRLSPSGLARRAGLDPTSFNKSKRQSTDGRDRWPSTESIAKIL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            AT  ++ Q L L   +   +E+++      IPL+ F  +G+GGFFD G FP G  W+T+
Sbjct: 61  HATGASVDQFLALMEPNAAGSEREDASAAPGIPLIGFAQAGAGGFFDDGGFPVGQGWDTI 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             P            Q      + Q  SMLPLYR GD+LI++ + QV   DR+++K R G
Sbjct: 121 EFPTPERR-------QGGTYALEVQGDSMLPLYRDGDVLIVDPSAQVRRNDRVVVKTRGG 173

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++AKVL  +  R I+L+SLN  +P    EM+D+EWIARI+WASQ
Sbjct: 174 EVMAKVLARQTPRGIELVSLNPDHPNRNFEMNDVEWIARIIWASQ 218


>gi|154245416|ref|YP_001416374.1| putative phage repressor [Xanthobacter autotrophicus Py2]
 gi|154159501|gb|ABS66717.1| putative phage repressor [Xanthobacter autotrophicus Py2]
          Length = 225

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 87/234 (37%), Positives = 130/234 (55%), Gaps = 22/234 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +H ++W AID++AE+H L+ SGLAR++GLDPT+FN+SKR   +GR RWPSTESI K L
Sbjct: 1   MLTHGQVWRAIDQLAEQHGLSTSGLARRSGLDPTTFNRSKRITTDGRLRWPSTESIAKAL 60

Query: 63  AATNET-------------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           +AT  +                       + +        IP + F  +GSGGFFD   F
Sbjct: 61  SATGTSAELFFAMMVPADERHGGAHGFAEESQPLTGPIHAIPQIGFAQAGSGGFFDDAGF 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           P G  W+ +  PE+   H             +    SM P+YR GDI++++    V  GD
Sbjct: 121 PVGTGWDEIAFPEVEDQH---------AYALEIAGDSMQPVYRNGDIVVVSPGTPVRRGD 171

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           R+++K R G+++AK L+ +  R ++L SLN  +    + +  +EW+ARI+WASQ
Sbjct: 172 RVVVKTREGEVLAKELVRKTTRHVELRSLNPAHEDRQIPLDQLEWMARIIWASQ 225


>gi|158422012|ref|YP_001523304.1| S24 family peptidase [Azorhizobium caulinodans ORS 571]
 gi|158328901|dbj|BAF86386.1| peptidase family S24 protein [Azorhizobium caulinodans ORS 571]
          Length = 222

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/231 (39%), Positives = 136/231 (58%), Gaps = 19/231 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +H +IW AIDR+AE + L+ SGLA++AGLD T+FN+SKR   +GR RWPSTES+ KIL
Sbjct: 1   MLTHGQIWTAIDRLAEANGLSASGLAKRAGLDSTAFNRSKRITSDGRPRWPSTESVSKIL 60

Query: 63  AATNETICQL----------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           +ATN ++                   +     + ++ IP +    +G GGFFD   FP G
Sbjct: 61  SATNTSMRAFLALLEGEDIGPSGFSEEPAPPFRPQRAIPHIGLAQAGDGGFFDDAGFPVG 120

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           + W+ +  PE+   H             +    SMLPLYR GD+++++ A  V  GDR++
Sbjct: 121 SGWDEILFPEVEDEH---------AYALEISGDSMLPLYRPGDLVVVSPAASVRKGDRVV 171

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +K R G+++AK L+ R  R+++L SLN  Y   T+  +D+ WIARI+WASQ
Sbjct: 172 VKTRDGEVLAKELVRRTARTVELRSLNPEYEGRTLAATDVLWIARIIWASQ 222


>gi|298290079|ref|YP_003692018.1| phage repressor [Starkeya novella DSM 506]
 gi|296926590|gb|ADH87399.1| putative phage repressor [Starkeya novella DSM 506]
          Length = 206

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/221 (41%), Positives = 132/221 (59%), Gaps = 15/221 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +H +IW AID++AERH L+ S LA++AGLDPT+FN+SKR   +GR RWPSTESI KIL
Sbjct: 1   MLTHAQIWRAIDQLAERHGLSASALAKRAGLDPTTFNRSKREQPDGRARWPSTESIAKIL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           AAT  ++   + L     R      + IPL+ F  +G GG+FD   FP G  W+ +  P 
Sbjct: 61  AATGASLDDFMALIGGGTR------RAIPLIGFAQAGRGGYFDDAGFPVGGAWDEIEFPN 114

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +   H             +    SMLPLYR GD+++++ A     GDR+++K R G+++A
Sbjct: 115 VGDEH---------AYALEIAGDSMLPLYRDGDVVVVSPAAATRRGDRVIVKTREGEVMA 165

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K L  R  ++++L SLN  +     +  +I WIAR+LWASQ
Sbjct: 166 KELKRRTAKTVELRSLNPEHADRVFQEGEIAWIARVLWASQ 206


>gi|83859576|ref|ZP_00953096.1| peptidase S24 [Oceanicaulis alexandrii HTCC2633]
 gi|83851935|gb|EAP89789.1| peptidase S24 [Oceanicaulis alexandrii HTCC2633]
          Length = 210

 Score =  201 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 120/224 (53%), Gaps = 15/224 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIF 59
           M   +H +IW  IDR+A R  LTPSGLAR+AGLDPT+FN SKR   +G + RWPSTES+ 
Sbjct: 1   MPMLTHAQIWSGIDRLAHRAGLTPSGLARRAGLDPTTFNPSKRTSADGAKPRWPSTESLA 60

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K L AT  +      L            + +PLL F  +G  G+FD   FPTG  W  + 
Sbjct: 61  KALEATRVSFDDFAALAM-----GHTAGRSVPLLGFAQAGDHGYFDDAGFPTGEGWEDIR 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            P                   +    SM P+YR GD ++++       GDR+++K R+G+
Sbjct: 116 FPGDEGEG---------AYALEISGESMSPVYRHGDRIVVSPDAPPRRGDRVVVKTRSGE 166

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           ++AK L      S++L+SLN  Y    +   D+ W+ARI+WASQ
Sbjct: 167 VMAKELGRVTAESVELISLNPSYDNRILSTRDLVWMARIVWASQ 210


>gi|222084796|ref|YP_002543325.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722244|gb|ACM25400.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 221

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/228 (47%), Positives = 147/228 (64%), Gaps = 14/228 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IW AID++AER+ LTPSGLAR+AGLDPTSFNKSKR G +GR RWPSTESI K+L
Sbjct: 1   MLSHEQIWSAIDKLAERYALTPSGLARRAGLDPTSFNKSKRLGQDGRLRWPSTESIAKVL 60

Query: 63  AATNETICQL-------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            AT  ++ Q             +    +      IPLL F  +GSGGFFD G FP G  W
Sbjct: 61  GATGASMEQFLGILRPVERGDGNADHASSPPASSIPLLGFAQAGSGGFFDDGGFPAGQGW 120

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           + V  P       G+YA++        Q  SMLPLYR GD+LI+    Q+   DR+++K 
Sbjct: 121 DMVEFPAAPGQKGGVYALE-------VQGESMLPLYRDGDVLIVEPGAQIRRSDRVVVKT 173

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           R G+++AKVL+ +  +SI+L+SLN  +P  + +++D+EWIARI+WASQ
Sbjct: 174 REGEVMAKVLLRQSAKSIELLSLNPEHPNRSFDLADVEWIARIIWASQ 221


>gi|86751722|ref|YP_488218.1| putative phage repressor [Rhodopseudomonas palustris HaA2]
 gi|86574750|gb|ABD09307.1| putative phage repressor [Rhodopseudomonas palustris HaA2]
          Length = 210

 Score =  199 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 96/223 (43%), Positives = 136/223 (60%), Gaps = 13/223 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +H +IW A+DR+AER  L+PSGLA+K+GLDPT+FNKSKR   +GR RWPSTES+ K
Sbjct: 1   MQMLTHDQIWTALDRLAERSGLSPSGLAKKSGLDPTTFNKSKRITNDGRERWPSTESVAK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            LAATN  I   + L         +  + +PLL    +G+GGFFD G FP G  W+ +G+
Sbjct: 61  ALAATNTAIDTFVQLITDRP----RVVQSVPLLGLAQAGAGGFFDDGGFPAGKGWDEIGL 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P I   H             +    SM P YR GDI++++    +  GDR+++K  +G++
Sbjct: 117 PSINDEH---------AYALEISGESMKPAYRDGDIIVVSPGTAIRRGDRVVVKTTSGEV 167

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + K L  R  + ++L SLN  +P  T+  +D+EWIARI+WASQ
Sbjct: 168 MVKELKRRTTKIVELASLNPSHPDRTLAPADVEWIARIVWASQ 210


>gi|239787365|emb|CAX83841.1| Predicted transcriptional regulator [uncultured bacterium]
          Length = 210

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 132/221 (59%), Gaps = 11/221 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H  IW AIDR+A +H LT SGLARKAGLDPT+FNKSKR   EG+ RWPSTES+ K+L
Sbjct: 1   MLRHADIWHAIDRLAFKHGLTASGLARKAGLDPTTFNKSKRTSPEGKLRWPSTESVAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            AT  +I + + +  +         + IPL+    +GS G+FD   +PTG  W+ +  PE
Sbjct: 61  TATGASIAEFVTMIDN--PDETGAVQRIPLIGLAQAGSDGYFDDAGYPTGAGWDEIPFPE 118

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +           ++    +    SM PLYR+GDI+I++ A Q+   DR+++K   G+++ 
Sbjct: 119 MGD---------SKAYALEITGDSMEPLYREGDIVIVSPAAQIRRADRVIVKTNDGEVMV 169

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K L+ R  + +DL SLN  +P  ++ + ++  I R++WASQ
Sbjct: 170 KQLLRRTAKFVDLQSLNDQHPNRSLPIEEVALIHRVVWASQ 210


>gi|114704909|ref|ZP_01437817.1| Peptidase family S24:Peptidase S24, C-terminal [Fulvimarina pelagi
           HTCC2506]
 gi|114539694|gb|EAU42814.1| Peptidase family S24:Peptidase S24, C-terminal [Fulvimarina pelagi
           HTCC2506]
          Length = 216

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 93/225 (41%), Positives = 136/225 (60%), Gaps = 13/225 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH +IW AID +A+R+ LTPSGLARKAGLDPT+FNKSKR   +GR RWPSTES+ KI 
Sbjct: 1   MFSHDEIWSAIDALAKRNGLTPSGLARKAGLDPTTFNKSKRQSTDGRPRWPSTESLSKIF 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPL----LYFPPSGSGGFFDSGVFPTGNKWNTV 118
            A N +      L   D   ++ K +  P+    L    +G GGFFD   FP G+ W+ +
Sbjct: 61  EAVNSSFGDFAQLVSGDDAESDSKVRSKPVSVPLLGLAEAGGGGFFDDAGFPAGHGWDEI 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +P+ +                +    SM PLYR+GD ++++    V  GDR+++K R G
Sbjct: 121 TLPDGKDEP---------MYALEVSGRSMEPLYREGDRIVVSPTASVRRGDRVVVKTREG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++AK+L  +  R+I+L SLN  +P+    + +I+W+ARI+WA+Q
Sbjct: 172 EVMAKILQRQTARTIELSSLNPDFPLRQFAVEEIDWLARIVWATQ 216


>gi|91975266|ref|YP_567925.1| putative phage repressor [Rhodopseudomonas palustris BisB5]
 gi|91681722|gb|ABE38024.1| peptidase S24, S26A and S26B [Rhodopseudomonas palustris BisB5]
          Length = 210

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 132/223 (59%), Gaps = 13/223 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +H +IW A+DR+AER  L+ SGLA+++GLDPT+FNKSKR   +GR RWPSTES+ K
Sbjct: 1   MHMLTHDQIWTALDRLAERAGLSASGLAKRSGLDPTTFNKSKRITNDGRERWPSTESVAK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            LAATN  I   + L         +  + +PLL    +G+GGFFD G FP G  W  VG+
Sbjct: 61  ALAATNTAIDTFVQLITDRP----RVVQSVPLLGLAQAGAGGFFDDGGFPAGKGWEEVGL 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P +   H             +    SM P YR GDI++++    +  GDR+++K   G++
Sbjct: 117 PSVNDEH---------AYALEISGDSMKPAYRDGDIIVVSPGTAIRRGDRVVVKTTGGEV 167

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + K L  R  + ++L SLN  +   T+  +D+EWIARI+WASQ
Sbjct: 168 MVKELKRRTTKIVELASLNPSHADRTLAPADVEWIARIVWASQ 210


>gi|163851531|ref|YP_001639574.1| peptidase S24/S26 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163663136|gb|ABY30503.1| peptidase S24 and S26 domain protein [Methylobacterium extorquens
           PA1]
          Length = 210

 Score =  196 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/222 (41%), Positives = 130/222 (58%), Gaps = 13/222 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IW AIDR+AERH  + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L
Sbjct: 1   MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121
           AAT  ++   L L  S    T      +PL+    +GSG  F+    PTG   W+ +  P
Sbjct: 61  AATGASLDDFLHLVDSGQGPTRT---MVPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFP 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           ++            +    + Q  SMLPLYR GD+LI+     +  GDR++ +   G+++
Sbjct: 118 DLGG---------DRAFALEVQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLNNGEVL 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           AK L  R  R+I+L SLN  +    V ++D+ W+AR++W  Q
Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLADVAWMARVMWVRQ 210


>gi|218530341|ref|YP_002421157.1| phage repressor [Methylobacterium chloromethanicum CM4]
 gi|240138699|ref|YP_002963171.1| putative LexA/Signal peptidase [Methylobacterium extorquens AM1]
 gi|218522644|gb|ACK83229.1| putative phage repressor [Methylobacterium chloromethanicum CM4]
 gi|240008668|gb|ACS39894.1| putative LexA/Signal peptidase [Methylobacterium extorquens AM1]
          Length = 210

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 13/222 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IW AIDR+AERH  + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L
Sbjct: 1   MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121
           AAT  ++   L L  S    T      +PL+    +GSG  F+    PTG   W+ +  P
Sbjct: 61  AATGASLDDFLHLVDSGQGPTRT---MVPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFP 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           ++            +    + Q  SMLPLYR GD+LI+     +  GDR++ +   G+++
Sbjct: 118 DLGG---------DRAFALEVQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLNNGEVL 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           AK L  R  R+I+L SLN  +    V ++++ W+AR++W  Q
Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210


>gi|254561298|ref|YP_003068393.1| LexA/Signal peptidase [Methylobacterium extorquens DM4]
 gi|254268576|emb|CAX24533.1| putative LexA/Signal peptidase [Methylobacterium extorquens DM4]
          Length = 210

 Score =  195 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 13/222 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IW AIDR+AERH  + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L
Sbjct: 1   MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121
           AAT  ++   L L  S    T      +PL+    +GSG  F+    PTG   W+ +  P
Sbjct: 61  AATGASLDDFLHLVDSGQAPTRT---MVPLIGLTQAGSGRLFNEEGIPTGGPGWDEIEFP 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           ++            +    + Q  SMLPLYR GD+LI+     +  GDR++ +   G+++
Sbjct: 118 DLGG---------DRAFALEVQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLTNGEVL 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           AK L  R  R+I+L SLN  +    V ++++ W+AR++W  Q
Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210


>gi|188581313|ref|YP_001924758.1| phage repressor [Methylobacterium populi BJ001]
 gi|179344811|gb|ACB80223.1| putative phage repressor [Methylobacterium populi BJ001]
          Length = 210

 Score =  195 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 91/222 (40%), Positives = 129/222 (58%), Gaps = 13/222 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IW AIDR+AERH  + SGLAR+AGLD TSFN+SKR G +GR RWPSTESI K+L
Sbjct: 1   MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVP 121
           +AT  ++   L L  S   +       +PL+    +GSG  F     PTG   W+ +  P
Sbjct: 61  SATGASLDDFLHLVDSGQASART---MVPLIGLTQAGSGRLFTEEGIPTGGPGWDEIEFP 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           ++   H             + Q  SMLPLYR GD+LI+     +  GDR++ +   G++V
Sbjct: 118 DLGGDH---------AFALEVQGDSMLPLYRDGDVLIVAPNASIRKGDRIVARLTNGEVV 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           AK L  R  R+I+L SLN  +    V ++++ W+AR++W  Q
Sbjct: 169 AKELRRRTARTIELASLNPDHEDRAVPLAEVAWMARVMWVRQ 210


>gi|23015760|ref|ZP_00055528.1| COG2932: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 211

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 10/221 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H  IW AID +A  H LT S LARKAGLDPT+FNKSKR   EG+ RWPSTES+ K+L
Sbjct: 1   MLKHADIWAAIDALARDHGLTASALARKAGLDPTTFNKSKRVTREGKPRWPSTESVAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            AT  T+   +           +    IPL+ F  +G  G+FD   +P G  W+ +  PE
Sbjct: 61  EATGATMTAFVGYIEDT-AQARQTANTIPLIGFAQAGDCGYFDDAGYPVGGSWDEIPFPE 119

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           I  PH             +    SM PLYR GD++I++ A  V  GDR++++   G+++ 
Sbjct: 120 IGDPH---------AYALEVSGDSMEPLYRDGDVVIVSPAAGVRRGDRVVVRTTEGEVMV 170

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K L+ +  + I+L S+N  +P  ++   ++ WIARILW+SQ
Sbjct: 171 KQLVRQTAKRIELASINPAHPGRSLATEEVAWIARILWSSQ 211


>gi|222147460|ref|YP_002548417.1| bacteriophage repressor protein [Agrobacterium vitis S4]
 gi|221734450|gb|ACM35413.1| bacteriophage repressor protein [Agrobacterium vitis S4]
          Length = 224

 Score =  194 bits (492), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 106/233 (45%), Positives = 138/233 (59%), Gaps = 21/233 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH+ IW AIDR+AE+++LTPSGLARKAGLDPTSFNKSKR G +GR RWPSTESI K+L
Sbjct: 1   MLSHETIWNAIDRLAEQYHLTPSGLARKAGLDPTSFNKSKRVGPDGRMRWPSTESIAKVL 60

Query: 63  AATNETICQLLD------------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
            AT   I Q +                        +   IPLL    +GSGGFFD G FP
Sbjct: 61  EATGARIDQFVTLISNDNHQVNAVHETLPDGNFPPQIGTIPLLGLAQAGSGGFFDDGGFP 120

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G  W+ V +P          + +      + Q  SM PLYR GDILI+     V  GDR
Sbjct: 121 AGQGWDLVDLPT---------SAKPGVYALEIQGDSMKPLYRDGDILIVEPGAPVRRGDR 171

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++K   G+++AKVL  +  R++DL+S+N  +P   ++M D+EWIARI+W SQ
Sbjct: 172 VVVKTCDGEVMAKVLGRQTARTVDLISINPDHPNRVLDMQDVEWIARIIWVSQ 224


>gi|170746983|ref|YP_001753243.1| putative phage repressor [Methylobacterium radiotolerans JCM 2831]
 gi|170653505|gb|ACB22560.1| putative phage repressor [Methylobacterium radiotolerans JCM 2831]
          Length = 210

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 129/222 (58%), Gaps = 13/222 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IW AIDR+AERH  + SGLAR+AGLD TSFN+SKR G +GR RWPSTES+ K+L
Sbjct: 1   MLSHEQIWNAIDRLAERHGYSASGLARRAGLDATSFNRSKRVGADGRKRWPSTESVSKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVP 121
           AAT  ++ + L L              +PL+    +G+G  F     PTG   W  +  P
Sbjct: 61  AATGSSLDEFLRLIE---AREIPARTMVPLIGLTQAGAGRLFTDEGMPTGGAGWEEIEFP 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           ++          + +    + Q  SMLPL+R GD+LI++    V  GDR++++   G+++
Sbjct: 118 DLG---------EERAFALEIQGDSMLPLFRDGDVLIVSPTASVRKGDRVVVRLHGGEVL 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           AK L  R  R+++L SLN  +    + + ++ W+AR++W  Q
Sbjct: 169 AKELRRRTARTVELASLNPEHEDRVLNLGEVAWMARVMWVRQ 210


>gi|114799918|ref|YP_759340.1| S24 family peptidase [Hyphomonas neptunium ATCC 15444]
 gi|114740092|gb|ABI78217.1| peptidase, S24 family [Hyphomonas neptunium ATCC 15444]
          Length = 205

 Score =  193 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/220 (39%), Positives = 115/220 (52%), Gaps = 15/220 (6%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             HK IW  +D +A  H LT S LA++AGLDPTSFN SKR   +GR RWPSTES+ ++L 
Sbjct: 1   MQHKDIWRGLDLLAAHHGLTASALAKRAGLDPTSFNPSKREAADGRPRWPSTESLARVLD 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A          L         ++    PL+ F  +G  GFFD   FP G  W  V  P +
Sbjct: 61  AVGAGFDDFAALVEG------RRGGSAPLIGFAQAGQDGFFDDAGFPVGAGWEEVRFPGL 114

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            +               +    SM P YR GD +I+    +V  GDR++ K   G+++AK
Sbjct: 115 GAE---------TVYALEISGDSMEPAYRAGDRIIVAPGAEVKPGDRVVAKTVAGEVMAK 165

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           VL  +  R I+L SLN  YP    + S++ W+ARILWASQ
Sbjct: 166 VLARKNTRLIELASLNPAYPAREFKPSEVAWLARILWASQ 205


>gi|167644106|ref|YP_001681769.1| putative phage repressor [Caulobacter sp. K31]
 gi|167346536|gb|ABZ69271.1| putative phage repressor [Caulobacter sp. K31]
          Length = 219

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 16/227 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+  SH +IW AID +A+R +++PS +A+ AGLDPTSFN+SKR   + R RWPSTES+ K
Sbjct: 5   MSPLSHTEIWTAIDALAKRFDMSPSAMAKMAGLDPTSFNRSKRGDGDARPRWPSTESLAK 64

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L AT     +   L            + +PL+ F  +G+ G FD    P G  W+ +  
Sbjct: 65  VLEATGVGFSEFAALTERVRP---LNPRVVPLIGFAQAGAEGVFDETGAPIGAGWDEIDF 121

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P +                 +    ++ P++R GD ++++ +     GDR++++   G++
Sbjct: 122 PGLGDEG---------VYALEITGDALAPVFRDGDRILVSPSAPPRRGDRVVVRTAGGEL 172

Query: 181 VAKVLISRRGRSIDLMSLN----CCYPVDTVEMSDIEWIARILWASQ 223
           + K L     RS++L  LN          T+++ ++ WIARILWASQ
Sbjct: 173 LVKELARVTARSVELAPLNRLDGRDGGDRTLDLGEVVWIARILWASQ 219


>gi|209883821|ref|YP_002287678.1| peptidase S24 [Oligotropha carboxidovorans OM5]
 gi|209872017|gb|ACI91813.1| peptidase S24 [Oligotropha carboxidovorans OM5]
          Length = 207

 Score =  192 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/221 (41%), Positives = 133/221 (60%), Gaps = 14/221 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +H +IW A+DR+A R  L+PSGLA++AGLDPT+FNKSKR   +GR RWPSTES+ K L
Sbjct: 1   MMTHDQIWAALDRLAARAGLSPSGLAKRAGLDPTTFNKSKRVTNDGRERWPSTESVAKAL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           AAT  ++             +  +  ++PLL F  +GSGG+FD G FP G  WN VG+P 
Sbjct: 61  AATGVSVDTFAHFIE-----SSSRTVQVPLLGFAEAGSGGYFDDGGFPVGEGWNEVGLPS 115

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +   H             +    SM P YR GD+++++    +  GDR+++K + G+++ 
Sbjct: 116 VNDEH---------AYALEISGDSMKPAYRDGDVIVVSPGAPIRRGDRVVVKTKDGEVMV 166

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K L  R  + I+L SLN  +P  T   ++I+WIARI+WASQ
Sbjct: 167 KELRRRTQKVIELQSLNPAHPDRTFPTAEIDWIARIVWASQ 207


>gi|163761294|ref|ZP_02168369.1| putative phage-related transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162281451|gb|EDQ31747.1| putative phage-related transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 226

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 108/231 (46%), Positives = 145/231 (62%), Gaps = 16/231 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              SH++IW A+D +AERH LT SGLAR+AGLDPT+FNKSKR G +GR+RWPSTES+ K+
Sbjct: 3   PMLSHERIWSALDALAERHGLTASGLARRAGLDPTAFNKSKRRGADGRDRWPSTESLAKV 62

Query: 62  LAATNETICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           L AT  ++   +         D           +   IPLL F  +GSGGFFD G FP G
Sbjct: 63  LDATGSSLNDFMSLVVGGQRNDASAIPEGAFPPQAGSIPLLGFAQAGSGGFFDDGGFPAG 122

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
             W+ V  P   S   G+YA++        Q  SMLPLYR GDILI+    QV  GDR++
Sbjct: 123 QGWDVVDFPAQPSERPGVYALE-------VQGDSMLPLYRDGDILIVEPGAQVRRGDRVV 175

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           ++   G+++AKVL     RS++L+SLN  +P  + E+S+I+W+ARI+WASQ
Sbjct: 176 VRSGEGEVMAKVLNRLSPRSVELISLNPDHPNRSFELSEIDWMARIIWASQ 226


>gi|83313328|ref|YP_423592.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82948169|dbj|BAE53033.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 223

 Score =  191 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 10/222 (4%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               H  IW AID +A  H LT S LARKAGLDPT+FNKSKR   EG+ RWPSTES+ K+
Sbjct: 12  PMLKHADIWAAIDALARDHGLTASALARKAGLDPTTFNKSKRITREGKPRWPSTESVAKV 71

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L AT  ++   +       +    +   IPL+ F  +G  G+FD   +P G  W+ +  P
Sbjct: 72  LEATGASMTAFVAYIEDLAQP-HNQASTIPLVGFAQAGDRGYFDDAGYPVGGSWDEIPFP 130

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           EI  PH             +    SM PLYR GD++I++ A  V  GDR++++   G+++
Sbjct: 131 EIGDPH---------AYALEVSGDSMEPLYRDGDVVIVSPAAGVRRGDRVVVRTTEGEVM 181

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            K L+ +  R I+L S+N  +P  ++   ++ W+ARILW+SQ
Sbjct: 182 VKQLLRQTARRIELGSINPAHPGRSLATEEVAWMARILWSSQ 223


>gi|110632380|ref|YP_672588.1| putative phage repressor [Mesorhizobium sp. BNC1]
 gi|110283364|gb|ABG61423.1| putative phage repressor [Chelativorans sp. BNC1]
          Length = 214

 Score =  191 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 90/223 (40%), Positives = 134/223 (60%), Gaps = 11/223 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH+K+W AID +A RH+L+ SGLARKAGLD T+FN+SKR   +GR RWPSTES+ KI+
Sbjct: 1   MLSHEKVWAAIDALAARHSLSASGLARKAGLDSTAFNRSKRHSPDGRPRWPSTESLAKIM 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            AT  T+ +   L      +  +K   I +  + F  +G+GG+F    FP G  W  V +
Sbjct: 61  DATGVTLGEFTALIEEMAESGRRKPGRISVPLIGFAQAGAGGYFTDAGFPVGQGWEQVEL 120

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P   S               + Q  SMLPLYR GD+L++  +  V  GDR++++   G++
Sbjct: 121 PGQVSE---------AAYALEVQGDSMLPLYRNGDVLVVEPSAPVRRGDRVVVRTLDGEV 171

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +AK+L+ +  R ++L+SLN  +P   +   +++WIARI+WASQ
Sbjct: 172 MAKILLRQTSRQMELLSLNPDHPNRVLGHEEVDWIARIVWASQ 214


>gi|86356189|ref|YP_468081.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86280291|gb|ABC89354.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 223

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/230 (50%), Positives = 151/230 (65%), Gaps = 16/230 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SHK+IWEAIDR+AERH LTPSGLAR+AGLDPTSFNKSKR   +GR RWPSTESI K+L
Sbjct: 1   MLSHKQIWEAIDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60

Query: 63  AATNETICQLLDLPFS---------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            AT  ++ Q L                R        IPLL F  +G+GGFFD G FP G+
Sbjct: 61  DATGASMEQFLAFMQPASSSSGERIGERAGPSPGGAIPLLGFAQAGAGGFFDDGGFPAGH 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
            W+ V  P   S  +G+YA++        Q  SM+PLYR GD+LI+    QV   DR+++
Sbjct: 121 GWDVVEFPPKPSQRSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVVV 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +  TG+++AKVL+ +  RSI+LMSLN  +P  T++++D++WIARI+WASQ
Sbjct: 174 RTCTGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLADVDWIARIIWASQ 223


>gi|315499624|ref|YP_004088427.1| phage repressor [Asticcacaulis excentricus CB 48]
 gi|315417636|gb|ADU14276.1| putative phage repressor [Asticcacaulis excentricus CB 48]
          Length = 209

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 123/224 (54%), Gaps = 19/224 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE--GRNRWPSTESIFK 60
           S SH +IW AIDR+A     +PSGLAR AGLDPT+FNKSKR   E   R RWPSTES+ K
Sbjct: 2   SLSHAQIWNAIDRLARNLGTSPSGLARLAGLDPTAFNKSKRQSTEDPPRPRWPSTESLAK 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L AT ++      L            K +PL+ F  +G+ G FD   FP G  W+ +G+
Sbjct: 62  VLDATGQSFPDFAALTE-----PRPVPKGVPLIGFAQAGNDGLFDDAGFPVGQGWDEIGL 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGD 179
           P                   +    SMLPLYR GD +I++     +  GDR+++K   G+
Sbjct: 117 PAG-----------EGLYALEISGDSMLPLYRDGDRIIVDPLRQNLRRGDRVVVKTSEGE 165

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           ++AK L+    + ++L SLN  +    +E S + W+ARI+WASQ
Sbjct: 166 VMAKELVRLTEKQVELRSLNPDFSNRVLERSQVTWLARIVWASQ 209


>gi|254292703|ref|YP_003058726.1| phage repressor [Hirschia baltica ATCC 49814]
 gi|254041234|gb|ACT58029.1| putative phage repressor [Hirschia baltica ATCC 49814]
          Length = 206

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 119/221 (53%), Gaps = 16/221 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKIL 62
             H  IW  ID +A RH L+ S LAR AGLD T+FNKSKR   +G + RWPSTES+ K L
Sbjct: 1   MRHSDIWNGIDALAARHGLSVSALARAAGLDATAFNKSKRASADGSKPRWPSTESLSKAL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           AA      +  D+         ++ + IPL+    +G GGFFD   FP G  W+ +  P+
Sbjct: 61  AAVGTGWEEFADMAQG------RQGRTIPLIGLAQAGDGGFFDDAGFPVGASWDDIHFPD 114

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +                 +    SM P++R+GD +I+   + V  GDR++ K + G+++A
Sbjct: 115 MGDE---------TVYALEISGDSMEPVFREGDRIIVAPGMDVRRGDRVVAKTKEGEVLA 165

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K L       ++L+S N  YP      SDIEWIARILWASQ
Sbjct: 166 KFLGHLSASRVELISANPAYPPREFAASDIEWIARILWASQ 206


>gi|218671565|ref|ZP_03521235.1| putative phage-related transcriptional regulator protein [Rhizobium
           etli GR56]
          Length = 223

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 115/230 (50%), Positives = 152/230 (66%), Gaps = 16/230 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR   +GR RWPSTESI K+L
Sbjct: 1   MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTT---------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            AT  ++ Q L        ++               IPLL F  +G+GGFFD G FP G 
Sbjct: 61  DATGASMEQFLAFMRPGANSSAELPGERAKPPHGGAIPLLGFAQAGAGGFFDDGGFPAGQ 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
            W+ V  P   S  +G+YA++        Q  SM+PLYR GD+LI+    QV   DR+++
Sbjct: 121 GWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRVVV 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + R G+++AKVL+ +  RSI+LMSLN  +P  T+++SD+EWIARI+WASQ
Sbjct: 174 RTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 223


>gi|189022624|ref|YP_001932365.1| Peptidase family S24 [Brucella abortus S19]
 gi|260544608|ref|ZP_05820429.1| peptidase family S24 [Brucella abortus NCTC 8038]
 gi|261756989|ref|ZP_06000698.1| peptidase family S24 [Brucella sp. F5/99]
 gi|306839063|ref|ZP_07471883.1| Peptidase family S24 [Brucella sp. NF 2653]
 gi|306841676|ref|ZP_07474363.1| Peptidase family S24 [Brucella sp. BO2]
 gi|189021198|gb|ACD73919.1| Peptidase family S24 [Brucella abortus S19]
 gi|260097879|gb|EEW81753.1| peptidase family S24 [Brucella abortus NCTC 8038]
 gi|261736973|gb|EEY24969.1| peptidase family S24 [Brucella sp. F5/99]
 gi|306288206|gb|EFM59590.1| Peptidase family S24 [Brucella sp. BO2]
 gi|306405886|gb|EFM62145.1| Peptidase family S24 [Brucella sp. NF 2653]
          Length = 223

 Score =  188 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 99/228 (43%), Positives = 131/228 (57%), Gaps = 15/228 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K+
Sbjct: 5   TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64

Query: 62  LAATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           + AT  T  +                   +    IPLL    +G+GG+FD   FP G  W
Sbjct: 65  MEATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGW 124

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           + V  P                   +    SMLPLYR GD LI+     V  GDR++++ 
Sbjct: 125 DIVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 175

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           R G+++AK+L  +  R+I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 176 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223


>gi|225629264|ref|ZP_03787297.1| Repressor protein C [Brucella ceti str. Cudo]
 gi|237816924|ref|ZP_04595916.1| Repressor protein C [Brucella abortus str. 2308 A]
 gi|225615760|gb|EEH12809.1| Repressor protein C [Brucella ceti str. Cudo]
 gi|237787737|gb|EEP61953.1| Repressor protein C [Brucella abortus str. 2308 A]
          Length = 234

 Score =  188 bits (476), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 99/228 (43%), Positives = 131/228 (57%), Gaps = 15/228 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K+
Sbjct: 16  TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 75

Query: 62  LAATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           + AT  T  +                   +    IPLL    +G+GG+FD   FP G  W
Sbjct: 76  MEATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGW 135

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           + V  P                   +    SMLPLYR GD LI+     V  GDR++++ 
Sbjct: 136 DIVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 186

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           R G+++AK+L  +  R+I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 187 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 234


>gi|265999054|ref|ZP_05464836.2| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9]
 gi|263092030|gb|EEZ16327.1| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9]
          Length = 223

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 99/228 (43%), Positives = 132/228 (57%), Gaps = 15/228 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K+
Sbjct: 5   TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64

Query: 62  LAATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           + AT  T  + +                 +    IPLL    +G+GG+FD   FP G  W
Sbjct: 65  MEATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGW 124

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           + V  P                   +    SMLPLYR GD LI+     V  GDR++++ 
Sbjct: 125 DIVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 175

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           R G+++AK+L  +  R+I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 176 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223


>gi|260564858|ref|ZP_05835343.1| peptidase family S24 [Brucella melitensis bv. 1 str. 16M]
 gi|260152501|gb|EEW87594.1| peptidase family S24 [Brucella melitensis bv. 1 str. 16M]
          Length = 223

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 99/228 (43%), Positives = 132/228 (57%), Gaps = 15/228 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K+
Sbjct: 5   TMFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKV 64

Query: 62  LAATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           + AT  T  + +                 +    IPLL    +G+GG+FD   FP G  W
Sbjct: 65  MEATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAKAGAGGYFDDAGFPAGQGW 124

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           + V  P                   +    SMLPLYR GD LI+     V  GDR++++ 
Sbjct: 125 DIVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRT 175

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           R G+++AK+L  +  R+I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 176 RDGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 223


>gi|23500526|ref|NP_699966.1| S24 family peptidase [Brucella suis 1330]
 gi|62317372|ref|YP_223225.1| S24 family peptidase [Brucella abortus bv. 1 str. 9-941]
 gi|83269348|ref|YP_418639.1| S24 family peptidase [Brucella melitensis biovar Abortus 2308]
 gi|148558376|ref|YP_001257738.1| S24 family peptidase [Brucella ovis ATCC 25840]
 gi|161620851|ref|YP_001594737.1| repressor protein C [Brucella canis ATCC 23365]
 gi|163844918|ref|YP_001622573.1| hypothetical protein BSUIS_B0784 [Brucella suis ATCC 23445]
 gi|254695818|ref|ZP_05157646.1| Peptidase family S24 [Brucella abortus bv. 3 str. Tulya]
 gi|254698652|ref|ZP_05160480.1| Peptidase family S24 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700006|ref|ZP_05161834.1| Peptidase family S24 [Brucella suis bv. 5 str. 513]
 gi|254703127|ref|ZP_05164955.1| Peptidase family S24 [Brucella suis bv. 3 str. 686]
 gi|254705728|ref|ZP_05167556.1| Peptidase family S24 [Brucella pinnipedialis M163/99/10]
 gi|254720098|ref|ZP_05181909.1| Peptidase family S24 [Brucella sp. 83/13]
 gi|254732099|ref|ZP_05190677.1| Peptidase family S24 [Brucella abortus bv. 4 str. 292]
 gi|256015557|ref|YP_003105566.1| peptidase, S24 family [Brucella microti CCM 4915]
 gi|256157535|ref|ZP_05455453.1| Peptidase family S24 [Brucella ceti M490/95/1]
 gi|256253490|ref|ZP_05459026.1| Peptidase family S24 [Brucella ceti B1/94]
 gi|256256056|ref|ZP_05461592.1| Peptidase family S24 [Brucella abortus bv. 9 str. C68]
 gi|260167569|ref|ZP_05754380.1| Peptidase family S24 [Brucella sp. F5/99]
 gi|260759885|ref|ZP_05872233.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260763123|ref|ZP_05875455.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882275|ref|ZP_05893889.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261216238|ref|ZP_05930519.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|261220617|ref|ZP_05934898.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261313149|ref|ZP_05952346.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261750489|ref|ZP_05994198.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261753747|ref|ZP_05997456.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|265985104|ref|ZP_06097839.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265996036|ref|ZP_06108593.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|297249410|ref|ZP_06933111.1| peptidase family S24 [Brucella abortus bv. 5 str. B3196]
 gi|306846010|ref|ZP_07478577.1| Peptidase family S24 [Brucella sp. BO1]
 gi|23464158|gb|AAN33971.1| peptidase, S24 family [Brucella suis 1330]
 gi|62197565|gb|AAX75864.1| peptidase, S24 family [Brucella abortus bv. 1 str. 9-941]
 gi|82939622|emb|CAJ12611.1| Peptidase family S24:Peptidase S24, C-terminal [Brucella melitensis
           biovar Abortus 2308]
 gi|148369661|gb|ABQ62533.1| peptidase, S24 family [Brucella ovis ATCC 25840]
 gi|161337662|gb|ABX63966.1| Repressor protein C [Brucella canis ATCC 23365]
 gi|163675641|gb|ABY39751.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|255998217|gb|ACU49904.1| peptidase, S24 family [Brucella microti CCM 4915]
 gi|260670203|gb|EEX57143.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673544|gb|EEX60365.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260871803|gb|EEX78872.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260917845|gb|EEX84706.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260919201|gb|EEX85854.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261302175|gb|EEY05672.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261740242|gb|EEY28168.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261743500|gb|EEY31426.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262550333|gb|EEZ06494.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264663696|gb|EEZ33957.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|297173279|gb|EFH32643.1| peptidase family S24 [Brucella abortus bv. 5 str. B3196]
 gi|306273645|gb|EFM55490.1| Peptidase family S24 [Brucella sp. BO1]
          Length = 218

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 98/227 (43%), Positives = 130/227 (57%), Gaps = 15/227 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K++
Sbjct: 1   MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60

Query: 63  AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            AT  T  +                   +    IPLL    +G+GG+FD   FP G  W+
Sbjct: 61  EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            V  P                   +    SMLPLYR GD LI+     V  GDR++++ R
Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+++AK+L  +  R+I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218


>gi|327190883|gb|EGE57941.1| putative phage-related transcriptional regulator protein [Rhizobium
           etli CNPAF512]
          Length = 228

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 114/235 (48%), Positives = 152/235 (64%), Gaps = 21/235 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR   +GR RWPSTESI K+L
Sbjct: 1   MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60

Query: 63  AATNETICQL--------------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
            AT  ++ Q                +         + +   IPLL F  +G+GGFFD G 
Sbjct: 61  DATGASMEQFLALLPPGGTAAERTGERAQQPDSRFQPQGGAIPLLGFAQAGAGGFFDDGG 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
           FP G  W+ V  P   S  +G+YA++        Q  SM+PLYR GD+LI+    QV   
Sbjct: 121 FPAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRN 173

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           DR++++ R G+++AKVL+ +  RSI+LMSLN  +P  T+++SD+EWIARI+WASQ
Sbjct: 174 DRVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228


>gi|241202972|ref|YP_002974068.1| phage repressor [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856862|gb|ACS54529.1| putative phage repressor [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 225

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 111/232 (47%), Positives = 147/232 (63%), Gaps = 18/232 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH +IWEA+DR+AERH LTPSGLAR+AGLDPTSFNKSKR   +GR RWPSTESI K+L
Sbjct: 1   MLSHNQIWEALDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60

Query: 63  AATNETICQLLDLP-----------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            AT  ++ Q +                       +   IPLL F  +G+GGFFD G FP 
Sbjct: 61  DATGASMEQFMAFMRPDAGLSKQPAGQQENAFPPQGGSIPLLGFAQAGAGGFFDDGGFPA 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
           G  W+ V  P   S   G+YA++        Q  SM+PLYR GD+LI+    QV   DR+
Sbjct: 121 GQGWDVVEFPAAPSQKAGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRV 173

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++   G+++AKVL+ +  RSI+L+SLN  +P  T+E+SD++WIARI+WASQ
Sbjct: 174 VVRTNEGEVMAKVLLRQSPRSIELLSLNPEHPNRTLELSDVDWIARIIWASQ 225


>gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040121|gb|ACT56917.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 223

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK
Sbjct: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV
Sbjct: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI
Sbjct: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ
Sbjct: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223


>gi|218516275|ref|ZP_03513115.1| putative phage-related transcriptional regulator protein [Rhizobium
           etli 8C-3]
          Length = 228

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 114/235 (48%), Positives = 152/235 (64%), Gaps = 21/235 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR   +GR RWPSTESI K+L
Sbjct: 1   MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60

Query: 63  AATNETICQL--------------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
            AT  ++ Q                +         + +   IPLL F  +G+GGFFD G 
Sbjct: 61  DATGASMEQFLALLPPGGTAAERTGERAQRLDSRFQPEGGAIPLLGFAQAGAGGFFDDGG 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
           FP G  W+ V  P   S  +G+YA++        Q  SM+PLYR GD+LI+    QV   
Sbjct: 121 FPAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRN 173

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           DR++++ R G+++AKVL+ +  RSI+LMSLN  +P  T+++SD+EWIARI+WASQ
Sbjct: 174 DRVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228


>gi|254712567|ref|ZP_05174378.1| Peptidase family S24 [Brucella ceti M644/93/1]
 gi|254715639|ref|ZP_05177450.1| Peptidase family S24 [Brucella ceti M13/05/1]
 gi|261217388|ref|ZP_05931669.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261320261|ref|ZP_05959458.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922477|gb|EEX89045.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292951|gb|EEX96447.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 218

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 99/227 (43%), Positives = 131/227 (57%), Gaps = 15/227 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K++
Sbjct: 1   MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60

Query: 63  AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            AT  T  +                   +    IPLL    +G+GG+FD   FPTG  W+
Sbjct: 61  EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPTGQGWD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            V  P                   +    SMLPLYR GD LI+     V  GDR++++ R
Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+++AK+L  +  R+I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218


>gi|116250339|ref|YP_766177.1| phage-related transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115254987|emb|CAK06061.1| putative phage-related transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 225

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/232 (48%), Positives = 153/232 (65%), Gaps = 18/232 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH +IWEA+DR+AERH LTPSGLAR+AGLDPTSFNKSKR   +GR RWPSTESI K+L
Sbjct: 1   MLSHNQIWEALDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEI-----------PLLYFPPSGSGGFFDSGVFPT 111
            AT  ++ Q L     D   +E++ ++            PLL F  +G+GGFFD G FP 
Sbjct: 61  DATGASMEQFLAFMRPDAGPSEQQARQQENAFQPQGGSIPLLGFAQAGAGGFFDDGGFPA 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
           G  W+ V  P   S  +G+YA++        Q  SM+PLYR GD+LI+    QV   DR+
Sbjct: 121 GQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRNDRV 173

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++   G+++AKVL+ +  RSI+L+SLN  +P  T+E+SD++WIARI+WASQ
Sbjct: 174 VVRTNEGEVMAKVLLRQSPRSIELLSLNPEHPNRTLELSDVDWIARIIWASQ 225


>gi|190890233|ref|YP_001976775.1| phage-related transcriptional regulator protein [Rhizobium etli
           CIAT 652]
 gi|190695512|gb|ACE89597.1| putative phage-related transcriptional regulator protein [Rhizobium
           etli CIAT 652]
          Length = 228

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 114/235 (48%), Positives = 152/235 (64%), Gaps = 21/235 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSFNKSKR   +GR RWPSTESI K+L
Sbjct: 1   MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60

Query: 63  AATNETICQL--------------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
            AT  ++ Q                +         + +   IPLL F  +G+GGFFD G 
Sbjct: 61  DATGASMEQFLALLPPGGTAAERTGERAQRLDSRFQPQGGAIPLLGFAQAGAGGFFDDGG 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
           FP G  W+ V  P   S  +G+YA++        Q  SM+PLYR GD+LI+    QV   
Sbjct: 121 FPAGQGWDVVEFPAAPSQKSGVYALE-------VQGESMMPLYRDGDVLIVEPGAQVRRN 173

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           DR++++ R G+++AKVL+ +  RSI+LMSLN  +P  T+++SD+EWIARI+WASQ
Sbjct: 174 DRVVVRTREGEVMAKVLLRQSPRSIELMSLNPEHPNRTLDLSDVEWIARIIWASQ 228


>gi|225686559|ref|YP_002734531.1| Repressor protein C [Brucella melitensis ATCC 23457]
 gi|256111295|ref|ZP_05452321.1| DNA-binding protein RDGA [Brucella melitensis bv. 3 str. Ether]
 gi|265992801|ref|ZP_06105358.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|225642664|gb|ACO02577.1| Repressor protein C [Brucella melitensis ATCC 23457]
 gi|262763671|gb|EEZ09703.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|326410945|gb|ADZ68009.1| Repressor protein C [Brucella melitensis M28]
 gi|326554236|gb|ADZ88875.1| Repressor protein C [Brucella melitensis M5-90]
          Length = 218

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 98/227 (43%), Positives = 131/227 (57%), Gaps = 15/227 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K++
Sbjct: 1   MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60

Query: 63  AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            AT  T  + +                 +    IPLL    +G+GG+FD   FP G  W+
Sbjct: 61  EATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            V  P                   +    SMLPLYR GD LI+     V  GDR++++ R
Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+++AK+L  +  R+I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218


>gi|17988843|ref|NP_541476.1| DNA-binding protein RDGA [Brucella melitensis bv. 1 str. 16M]
 gi|256043668|ref|ZP_05446593.1| DNA-binding protein RDGA [Brucella melitensis bv. 1 str. Rev.1]
 gi|265990088|ref|ZP_06102645.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17984666|gb|AAL53740.1| DNA-binding protein rdga [Brucella melitensis bv. 1 str. 16M]
 gi|263000757|gb|EEZ13447.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 218

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 98/227 (43%), Positives = 131/227 (57%), Gaps = 15/227 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K++
Sbjct: 1   MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60

Query: 63  AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            AT  T  + +                 +    IPLL    +G+GG+FD   FP G  W+
Sbjct: 61  EATGATFDEFIRLIAGVDSLPRHLGEYTQDPHPIPLLGMAKAGAGGYFDDAGFPAGQGWD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            V  P                   +    SMLPLYR GD LI+     V  GDR++++ R
Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+++AK+L  +  R+I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218


>gi|256059031|ref|ZP_05449240.1| Peptidase family S24 [Brucella neotomae 5K33]
 gi|261322976|ref|ZP_05962173.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261298956|gb|EEY02453.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 218

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/227 (42%), Positives = 130/227 (57%), Gaps = 15/227 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH+ +W AID +AER++L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K++
Sbjct: 1   MFSHESVWAAIDALAERYSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60

Query: 63  AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            AT  T  +                   +    IPLL    +G+GG+FD   FP G  W+
Sbjct: 61  EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            V  P                   +    SMLPLYR GD LI+     V  GDR++++ R
Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+++AK+L  +  R+I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLNPEHPNRIFESKDIEWIARILWASQ 218


>gi|150395367|ref|YP_001325834.1| putative phage repressor [Sinorhizobium medicae WSM419]
 gi|150026882|gb|ABR58999.1| putative phage repressor [Sinorhizobium medicae WSM419]
          Length = 215

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/222 (50%), Positives = 147/222 (66%), Gaps = 8/222 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH  IW AID +AERH L+PSGLAR+AGLDPTSFNKSKR   +GR+RWPSTESI KIL
Sbjct: 1   MLSHDSIWRAIDALAERHRLSPSGLARRAGLDPTSFNKSKRRSADGRDRWPSTESISKIL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKE-IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
            AT  T+ Q + L   +   +EK+    IPL+ F  +G+GGFFD G FP G  W+++  P
Sbjct: 61  QATGATVDQFMALMQPNAAGSEKESAPGIPLIGFAQAGAGGFFDDGGFPVGQGWDSIEFP 120

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                  G YA++        Q  SMLPLYR GDILI++ + QV   DR++++ R G+++
Sbjct: 121 TAERRQTGAYALE-------VQGDSMLPLYRDGDILIVDPSAQVRRNDRVVVRTREGEVM 173

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           AKVL  +  R I+L+SLN  +P    EM ++EWIARI+WASQ
Sbjct: 174 AKVLARQTPRGIELVSLNPDHPNRNFEMKEVEWIARIIWASQ 215


>gi|209547798|ref|YP_002279715.1| phage repressor [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533554|gb|ACI53489.1| putative phage repressor [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 225

 Score =  186 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/232 (46%), Positives = 142/232 (61%), Gaps = 18/232 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH +IW AIDR+AERH LTPSGLAR+AGLDPTSFNKSKR   +GR RWPSTESI K+L
Sbjct: 1   MLSHDQIWGAIDRLAERHELTPSGLARRAGLDPTSFNKSKRLSADGRLRWPSTESIAKVL 60

Query: 63  AATNETICQL-----------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            AT  ++ Q                         +   IPLL F  +G+GGFFD G FP 
Sbjct: 61  DATGASVEQFLAFLQPDAGFSKRPAGQSDGAFPPQGSSIPLLGFAQAGAGGFFDDGGFPA 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
           G  W+ V  P          A ++     + Q  SM+PLYR GD+LI+    QV   DR+
Sbjct: 121 GQGWDVVEFPA-------APAQKSAVYALEVQGESMMPLYRDGDVLIVEPGAQVRRNDRV 173

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++   G+++AKVL+ +  RSI+LMSLN  +P  T+E+SD++WIARI+WASQ
Sbjct: 174 VVRTCEGEVMAKVLLRQSPRSIELMSLNPEHPNRTLELSDVDWIARIIWASQ 225


>gi|209966574|ref|YP_002299489.1| peptidase family S24, putative [Rhodospirillum centenum SW]
 gi|209960040|gb|ACJ00677.1| peptidase family S24, putative [Rhodospirillum centenum SW]
          Length = 214

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 11/223 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H +IW AIDR+A RH L+ SGLA++ GLDPT+FN+SKR   +G+ RWPSTES+ K+L
Sbjct: 1   MIKHAEIWRAIDRLAARHGLSASGLAKRGGLDPTTFNRSKRVTHDGKLRWPSTESLAKVL 60

Query: 63  AATNETICQLLD--LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            ATN T   L+        G+      + +P++ +  +GS GFFD   +P GN W+ +  
Sbjct: 61  EATNSTFADLVALAGDGPVGQAAPVHVQRVPVIGYAQAGSDGFFDDAGYPVGNGWDELEF 120

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P +  P              +    SM PLYR GD++I++    V  GDR++++ R G++
Sbjct: 121 PHLGDP---------NAYALEISGDSMEPLYRDGDVIIVSPGASVRRGDRVVVRTREGEV 171

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +AK L       ++L SLN  +P  T+ M+++ W+ARILWASQ
Sbjct: 172 MAKQLARLTANRLELQSLNKAHPDRTLAMTEVAWMARILWASQ 214


>gi|326403286|ref|YP_004283367.1| putative peptidase S24 [Acidiphilium multivorum AIU301]
 gi|325050147|dbj|BAJ80485.1| putative peptidase S24 [Acidiphilium multivorum AIU301]
          Length = 223

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 116/227 (51%), Gaps = 11/227 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL- 62
             H+ IW AID +A +  L+ S LAR AGLDPTSFN SKR   +GR RWPSTESI KIL 
Sbjct: 1   MQHEDIWRAIDALAAQRGLSASALARSAGLDPTSFNPSKRRTPDGRLRWPSTESIAKILS 60

Query: 63  ------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                  A    +      P    R      + +PL     +G GGFFD G  PTG  W+
Sbjct: 61  ASSIGIEAFAALVGGRSTTPAGTSRPRRPAVRTVPLASLAQAGQGGFFDEGGNPTGGGWD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            + +P      +   A          Q  SM P+YR GDI++++ A  V  GDR++I+  
Sbjct: 121 RIALPVG----DAGIAGDPHAFALTIQGDSMDPVYRDGDIIVVSPASPVRTGDRVVIRTA 176

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+++A+ L+ R    +DL   N  YP       +I  + RI+WASQ
Sbjct: 177 GGEVMARQLLRRTVSRVDLGCFNPAYPPRGFMTEEIGALHRIVWASQ 223


>gi|148259746|ref|YP_001233873.1| putative phage repressor [Acidiphilium cryptum JF-5]
 gi|146401427|gb|ABQ29954.1| putative phage repressor [Acidiphilium cryptum JF-5]
          Length = 223

 Score =  185 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 115/227 (50%), Gaps = 11/227 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL- 62
             H+ IW AID +A +  L+ S LAR AGLDPTSFN SKR   +GR RWPSTESI KIL 
Sbjct: 1   MQHEDIWRAIDALAAQRGLSASALARSAGLDPTSFNPSKRRTPDGRLRWPSTESIAKILS 60

Query: 63  ------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                  A    +      P    R      + +PL     +G  GFFD G  PTG  W+
Sbjct: 61  ASSIGIEAFAALVGGRSTTPAGTSRPRRPAMRTVPLASLAQAGQDGFFDEGGNPTGGGWD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            + +P      +   A          Q  SM P+YR GDI++++ A  V  GDR++I+  
Sbjct: 121 RIALPVG----DAGIAGDPHAFALTIQGDSMDPVYRDGDIIVVSPASPVRTGDRVVIRTA 176

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+++A+ L+ R    +DL   N  YP       +I  + RI+WASQ
Sbjct: 177 GGEVMARQLLRRTVSRVDLGCFNPAYPPRGFMTEEIGALHRIVWASQ 223


>gi|295687529|ref|YP_003591222.1| putative phage repressor [Caulobacter segnis ATCC 21756]
 gi|295429432|gb|ADG08604.1| putative phage repressor [Caulobacter segnis ATCC 21756]
          Length = 214

 Score =  184 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 13/225 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESI 58
           M + SH +IW AID +A+R ++TPS +AR AGLDPTSFN+SKR     +GR RWPSTES+
Sbjct: 1   MATLSHGEIWRAIDALADRFDMTPSAMARMAGLDPTSFNRSKRGSTEADGRARWPSTESL 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K+L AT     +   L           ++  PL+    +G  GFFD+   P G+ W+ V
Sbjct: 61  AKLLEATGVNFSEFAALTEQSPGAGAGGKRGAPLIGLAQAGQEGFFDAAGMPVGSGWDEV 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             P+          +       +    ++ P+YR GD L+++  ++   GDR++ +   G
Sbjct: 121 AAPD----------LGQGLFALEVSGETLAPVYRDGDRLLVSPTVEPRKGDRVVARTHAG 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++ + L     R+I+L++L        +   ++ WIARI+WASQ
Sbjct: 171 EVLVRELGRVTARTIELLAL-GRESDRLLSRDEVAWIARIVWASQ 214


>gi|315122107|ref|YP_004062596.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495509|gb|ADR52108.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 216

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 180/223 (80%), Positives = 194/223 (86%), Gaps = 7/223 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT FSH+KIWEAID+MA+RHNLTPSGLARKAGLDPTSFNKSKRFG+EGRNRWPSTESI K
Sbjct: 1   MTKFSHEKIWEAIDQMAKRHNLTPSGLARKAGLDPTSFNKSKRFGVEGRNRWPSTESISK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL ATNETICQ   + F + +  EKKEKEIPLL FPPS S GFFDSG FP GNKWNTVGV
Sbjct: 61  ILEATNETICQFFGILFLEEKNIEKKEKEIPLLDFPPSESSGFFDSGGFPAGNKWNTVGV 120

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           PEIRSPHNGIYA        + QDTSMLPLYRKGDILILN+AIQVNCGDR+LIKP  GDI
Sbjct: 121 PEIRSPHNGIYA-------IQIQDTSMLPLYRKGDILILNAAIQVNCGDRVLIKPHEGDI 173

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            AKVLIS+RGRSIDLMSLNCCYPVDT++ SDIEWIA+ILWASQ
Sbjct: 174 EAKVLISQRGRSIDLMSLNCCYPVDTIDASDIEWIAKILWASQ 216


>gi|254690871|ref|ZP_05154125.1| Peptidase family S24 [Brucella abortus bv. 6 str. 870]
 gi|260756453|ref|ZP_05868801.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260676561|gb|EEX63382.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
          Length = 218

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 97/227 (42%), Positives = 130/227 (57%), Gaps = 15/227 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH+ +W AID +AERH+L+ SGLAR+AGLDPT+FNKSKR+  +GR RWPSTES+ K++
Sbjct: 1   MFSHESVWAAIDALAERHSLSASGLARRAGLDPTTFNKSKRYAADGRARWPSTESLAKVM 60

Query: 63  AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            AT  T  +                   +    IPLL    +G+GG+FD   FP G  W+
Sbjct: 61  EATGATFDEFTRLIAGVDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            V  P                   +    SMLPLYR GD LI+     V  GDR++++ R
Sbjct: 121 IVEFPARTGEG---------VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTR 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+++AK+L  +  R+I+L SL+  +P    E  DIEWIARILWASQ
Sbjct: 172 DGEVMAKILHRQTPRTIELHSLDPEHPNRIFESKDIEWIARILWASQ 218


>gi|328544878|ref|YP_004304987.1| peptidase S24-like domain protein [polymorphum gilvum SL003B-26A1]
 gi|326414620|gb|ADZ71683.1| Peptidase S24-like domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 215

 Score =  181 bits (458), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 12/224 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH+++W AID +A R  L+PSGLAR+AGLDPT+FN SKR   +GR RWPSTES+ K+L
Sbjct: 1   MLSHERVWAAIDALATRKGLSPSGLARRAGLDPTTFNPSKRIAGDGRPRWPSTESLAKVL 60

Query: 63  AATNETICQLL---DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            AT   + + +       +D          +P          G+FD    P G  W+ + 
Sbjct: 61  EATGAPLAEFVALAAPLETDSAPPATSPMTVPFAGLDRVACEGYFDPTGNPIGRNWDEIP 120

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            P++R                +    ++LP+YR GDIL++   + V  GDR+++K ++G+
Sbjct: 121 FPDLRGEI---------LYALEVSGNALLPVYRDGDILVVAPDVPVRRGDRVIVKVKSGE 171

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           ++ ++L  R  R+++L SL     V   E+  IEWIARI+WASQ
Sbjct: 172 VIIRLLHRRTARTVELHSLAPSGTVHQCELDSIEWIARIVWASQ 215


>gi|16124337|ref|NP_418901.1| hypothetical protein CC_0082 [Caulobacter crescentus CB15]
 gi|221233019|ref|YP_002515455.1| LexA-like transcriptional repressor [Caulobacter crescentus NA1000]
 gi|13421181|gb|AAK22069.1| hypothetical protein CC_0082 [Caulobacter crescentus CB15]
 gi|220962191|gb|ACL93547.1| LexA-related transcriptional repressor [Caulobacter crescentus
           NA1000]
          Length = 213

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIF 59
           M + SH +IW AID +AER ++TPS +AR AGLDPTSFN+SKR   E G  RWPSTES+ 
Sbjct: 1   MATLSHGEIWRAIDALAERFDMTPSAMARMAGLDPTSFNRSKRGSAETGHARWPSTESLS 60

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K+L AT     +   L            +  PL+    +G  GFFD    P G  W+   
Sbjct: 61  KLLEATGVNFSEFAALTER-SPVRAPGRRGAPLIDLAQAGKDGFFDEAGMPVGAGWDEAP 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            P+          +       +     + P+YR GD L+++  ++   GDR++ +   G+
Sbjct: 120 APD----------LGEGLFALEVTGDDLAPVYRDGDRLLVSPTLEPRKGDRVVTRTHGGE 169

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           ++ + L     RSI+L++L+       +   ++ WIARI+W SQ
Sbjct: 170 VLVRELGRVTARSIELLALDRVSGERLLSRDEVAWIARIVWVSQ 213


>gi|302383458|ref|YP_003819281.1| phage repressor [Brevundimonas subvibrioides ATCC 15264]
 gi|302194086|gb|ADL01658.1| putative phage repressor [Brevundimonas subvibrioides ATCC 15264]
          Length = 211

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 17/224 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFK 60
           S SH ++W A+D +A R  L+ S LARKAGLD T+FN SKRFG     R RWPSTES+  
Sbjct: 2   SLSHDRLWTALDTLARRQGLSSSALARKAGLDATAFNPSKRFGPGVPPRPRWPSTESLNL 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL AT  ++ +   L          +    PLL    +G+ GFFD    PTG+ W    +
Sbjct: 62  ILEATGTSLAEFAALAD----DAPARIATAPLLGMAQAGADGFFDDAGLPTGDGWEQTDL 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGD 179
           P          + +           SM+PLYR+GD ++++     V  GDR++ + R+G+
Sbjct: 118 P----------SPKESLFSLLISGDSMVPLYREGDRVLVDRERTDVRKGDRVVARTRSGE 167

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            +AK + +   R++ L S+N  YP   +  +D++W+ARILW SQ
Sbjct: 168 TLAKQIEALTARTVTLASINPAYPPRVLARADVDWMARILWVSQ 211


>gi|254420759|ref|ZP_05034483.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
 gi|196186936|gb|EDX81912.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
          Length = 211

 Score =  178 bits (450), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 118/224 (52%), Gaps = 17/224 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFK 60
             SH K+W+A+D +A R  L+PSGLAR+AGLD TSFN SKRFG     R RWPSTES+  
Sbjct: 2   PLSHAKLWKAVDALARREGLSPSGLARRAGLDATSFNPSKRFGAGDPPRPRWPSTESMTL 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L AT  ++ +   L              +PLL    +G  GFFD    P G+ W+   +
Sbjct: 62  MLQATGVSLAEFAALAD----DAPPTSTTVPLLGLARAGLDGFFDDAGLPVGDGWDQTEL 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGD 179
           P           +       +    SM PLYR+GD +I++        GDR++ +  +G+
Sbjct: 118 PR----------VNATTFSLRISGDSMAPLYREGDRVIVDRGDPAVRRGDRVVARLTSGE 167

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +VAK L     R+  L S+N  YP   V   +IEW+ARILW SQ
Sbjct: 168 VVAKELTGLTARAATLSSINPDYPPRIVPRREIEWMARILWVSQ 211


>gi|90418702|ref|ZP_01226613.1| putative transcription regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336782|gb|EAS50487.1| putative transcription regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 215

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 97/224 (43%), Positives = 135/224 (60%), Gaps = 12/224 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH +IW AID +A RH ++PSGLAR+AGLDPT+FNKSKR   +GR RWPSTESI K++
Sbjct: 1   MFSHDRIWLAIDALATRHRMSPSGLARRAGLDPTTFNKSKRNASDGRPRWPSTESIAKVI 60

Query: 63  AATNETICQL---LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           AAT  +I +    +         +      +PLL F  +G GGFFD   FP G  W+ + 
Sbjct: 61  AATGTSIEEFAALMRGETPGVPRSPSPAMSVPLLGFAEAGGGGFFDDSGFPAGQGWDEIA 120

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +P                   +    SM+PLYR GDILI++ A  V  GDR++++ R G+
Sbjct: 121 LPSTGDE---------TVYALEVSGQSMMPLYRDGDILIVSPAAAVRRGDRVVVRTREGE 171

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           ++AK+L  +  R+I+L S N  +P    +M ++EW+ARILWASQ
Sbjct: 172 VMAKILQRQTSRTIELASTNPDFPDRQFQMDEVEWMARILWASQ 215


>gi|27376249|ref|NP_767778.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349389|dbj|BAC46403.1| bll1138 [Bradyrhizobium japonicum USDA 110]
          Length = 217

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 122/220 (55%), Gaps = 13/220 (5%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +H +IW A+DR+A R  L+PSGLA++AGLDPT+FN+SKR   +GR RWPSTESI K LA
Sbjct: 11  LTHDQIWVALDRLAARAGLSPSGLAKRAGLDPTTFNRSKRVTSDGRERWPSTESIAKALA 70

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A   +    +D+            + +PLL    +G+ G FD    P+G  W  + +P  
Sbjct: 71  AAGAS----IDVFAGLISDETGNSRSVPLLGLAQAGASGAFDESGLPSGKGWTELALPT- 125

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                   A  +Q    +    ++ P YR GD+++++    +  GDR+++  + G++   
Sbjct: 126 --------AEDSQTFALEIAGDALAPTYRNGDVILVSPGTPIRKGDRVVVTTKAGEVTVA 177

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            L  R  +++DL+ L+      T+   ++ W+ARI+WASQ
Sbjct: 178 TLKRRTAKALDLLPLDASQAERTIAAGELAWVARIVWASQ 217


>gi|296532329|ref|ZP_06895067.1| S24 family peptidase [Roseomonas cervicalis ATCC 49957]
 gi|296267353|gb|EFH13240.1| S24 family peptidase [Roseomonas cervicalis ATCC 49957]
          Length = 216

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 127/225 (56%), Gaps = 14/225 (6%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             H  IW A+D +A  H L+PSGLARKAGLDPT+FN SKR G +GR RWPSTES+ KILA
Sbjct: 1   MRHDDIWRAVDALAAEHGLSPSGLARKAGLDPTAFNPSKRLGTDGRARWPSTESVAKILA 60

Query: 64  ATNETICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           AT   +     L        +        + IPL+    +G  G+F  G +P G  W+ +
Sbjct: 61  ATGTDMESFAALVTGAAAALNRSPRSMPGRRIPLIGLAQAGGDGYFGDGGYPVGAGWDEI 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             PE+  P              +    SM P++R GDI+I++    V  GDR++++   G
Sbjct: 121 STPELSDP---------NAYALEISGDSMEPVFRDGDIIIVSPNAPVRRGDRVVVRTLKG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +++AK L+ +  R I+L SLN  +P  + ++++I WI RILWASQ
Sbjct: 172 EVMAKELLRQSARRIELASLNPAHPGYSFDLAEIAWIHRILWASQ 216


>gi|304394055|ref|ZP_07375978.1| dna-binding protein rdga [Ahrensia sp. R2A130]
 gi|303293495|gb|EFL87872.1| dna-binding protein rdga [Ahrensia sp. R2A130]
          Length = 232

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 29/241 (12%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSHK++W AID +A+ ++++ S LAR AGLD T+FNKSKR G +GR RWPSTES+ KI+
Sbjct: 1   MFSHKQVWAAIDALAQDNDMSVSKLARTAGLDATTFNKSKRIGADGRQRWPSTESLSKIM 60

Query: 63  AATNETICQLLDLPFS--------------------DGRTTEKKEKEIPLLYFPPSGSGG 102
            AT   I   +                                    IPLL    +GSGG
Sbjct: 61  DATKTDIDGFMATMRDGQASFAAGFAGMSETGGTYVPDAPGHPVPVSIPLLGLAQAGSGG 120

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
           FFD    PTG  W  V  P+         + +      +    SM PLYR GD ++++  
Sbjct: 121 FFDDAGLPTGEGWEAVEFPQ---------SDREPLYALEIAGDSMEPLYRDGDRIVVSPT 171

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             V  GDR++++   G+I+AK L  +  ++++L S N  +   T ++++++W+ARI+W S
Sbjct: 172 ASVRRGDRVVVRTSDGEIMAKTLARQTAKTVELDSENPEHQKRTFDLTEVDWVARIMWVS 231

Query: 223 Q 223
           Q
Sbjct: 232 Q 232


>gi|254504422|ref|ZP_05116573.1| Peptidase S24-like domain protein [Labrenzia alexandrii DFL-11]
 gi|222440493|gb|EEE47172.1| Peptidase S24-like domain protein [Labrenzia alexandrii DFL-11]
          Length = 221

 Score =  168 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 13/224 (5%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              SH+K+W AID +A  + +TPSGLA++AGLDPT+FN+SKRF  +GR RWPSTES+ KI
Sbjct: 9   PMLSHEKVWAAIDALASYNEMTPSGLAKRAGLDPTTFNRSKRFAGDGRPRWPSTESLAKI 68

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L AT E++        +           +P+  F        FD+   PTG  W T+  P
Sbjct: 69  LEATGESLKSFAGRVEAPELRPSTTLSALPVAGFSNVHEENAFDTTGRPTGEHWETIVFP 128

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              +               +    ++LPLYRKGD++++  +  V  GDR+++KP  G + 
Sbjct: 129 TDHTQ---------NIFALEVSGDALLPLYRKGDLIVVAPSAAVRRGDRIVLKPSEGGLA 179

Query: 182 AKVLISRRGRSIDL--MSLNCCYPVDTVEMSDIEWIARILWASQ 223
              L+ R  +++ +  +  N       +  S IEW ARI+WASQ
Sbjct: 180 VYTLLKRTPKTLQVQTIGDNP--ENAALLHSAIEWTARIIWASQ 221


>gi|307941488|ref|ZP_07656843.1| peptidase family S24 [Roseibium sp. TrichSKD4]
 gi|307775096|gb|EFO34302.1| peptidase family S24 [Roseibium sp. TrichSKD4]
          Length = 218

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 15/227 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SHK+IW AID +A R+ L+PSGLAR+AGLDPT+FN SKRFG +GR RWPSTES+ KIL
Sbjct: 1   MLSHKQIWAAIDTLAARNGLSPSGLARRAGLDPTTFNPSKRFGGDGRPRWPSTESLSKIL 60

Query: 63  AATNETICQLLD------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            AT E++  L++                +  + +P+  F  +     FD    P+   W+
Sbjct: 61  QATGESLETLMEVLLGLAPTGPRAAPLAQDGRMVPIAGFSDANQQAAFDPTGRPSSPMWD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           ++  P+           +      +     + P YR GDILI+     +  GDR+L++  
Sbjct: 121 SLLFPDP---------KEKNLFALEINSDDLTPYYRSGDILIVAPVQAIRRGDRVLVRQT 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +G +   ++  +   + D  +L   +    +E + I+W+AR++W SQ
Sbjct: 172 SGALQLFLMDRQNPSAFDFHALTPPHETVHLERTKIDWVARVMWVSQ 218


>gi|118589338|ref|ZP_01546744.1| repressor protein CI [Stappia aggregata IAM 12614]
 gi|118438038|gb|EAV44673.1| repressor protein CI [Stappia aggregata IAM 12614]
          Length = 227

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 110/222 (49%), Gaps = 11/222 (4%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T  SH+K+W AID +A ++ LTPSGLAR+AGLDPT+FN SKR   +GR RWPSTES+ K+
Sbjct: 17  TVLSHEKVWAAIDALASQNGLTPSGLARRAGLDPTAFNPSKRVAGDGRPRWPSTESLAKV 76

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           LAAT E +        ++   +      +P+     +     FD+   P+G  W     P
Sbjct: 77  LAATGEALNTFAARVETEDAPSGSVPALVPVAALEAASDRNAFDAAGRPSGATWQQFSFP 136

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +                  +  +    PLYR GDI+++     +  GDRL +K  +G + 
Sbjct: 137 Q-----------PGASFALQVSNEDFQPLYRNGDIVVVAPDAPLRTGDRLALKLTSGRLS 185

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
              L    G  + + ++           S IEW ARI+WASQ
Sbjct: 186 LYTLQEAGGEELSVRTIGENSHSLRFRHSAIEWTARIIWASQ 227


>gi|114569067|ref|YP_755747.1| putative phage repressor [Maricaulis maris MCS10]
 gi|114339529|gb|ABI64809.1| putative phage repressor [Maricaulis maris MCS10]
          Length = 208

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 15/222 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKI 61
             +H  IW  IDR+A     +PSGLAR+AGLD T+FN SKR   +G + RWPSTESI K 
Sbjct: 1   MLTHDDIWRGIDRLARHAQTSPSGLARRAGLDSTTFNPSKRISADGTKPRWPSTESIAKA 60

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           LAA +        L     RT     +               FD+  +P G  W+ +  P
Sbjct: 61  LAAAHLDFDDFAGLISGQPRTGALPSRA-----LADGEEQDPFDATGYPAGPDWDAIPFP 115

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
            +            +      QDT MLP+YR GD L+++       GDR++++ R G   
Sbjct: 116 GLA---------PGEAFALTVQDTHMLPVYRPGDRLVVSHEAPTRVGDRVVVQRRDGSRS 166

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           A  L  +  +++ L  L+   P  T+ ++ + W+ARI+W SQ
Sbjct: 167 AWTLSEKTVQALRLAPLDPLQPALTLPLTQVAWLARIVWVSQ 208


>gi|220924406|ref|YP_002499708.1| peptidase S24/S26 domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219949013|gb|ACL59405.1| peptidase S24/S26 domain-containing protein [Methylobacterium
           nodulans ORS 2060]
          Length = 209

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 104/219 (47%), Gaps = 12/219 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH++IW AID +A+RH LTPSGLAR+AGLD TSFN+SKR   +GR RWPSTES+ KIL
Sbjct: 1   MLSHERIWLAIDHLAQRHGLTPSGLARRAGLDATSFNRSKRIAPDGRKRWPSTESLAKIL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            AT  ++   L L              I           G       P G  W  +  P+
Sbjct: 61  TATGASLDDFLQLVEPRPAPPPAILPLIGSAALAAGRRIG---PDGRPAGAGWEEMEFPD 117

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           + +               + Q   +LPLY  GD+L++ +      GDR L+      + A
Sbjct: 118 LGAQ---------SCFAIEVQGEGLLPLYHDGDVLVVCATAPARRGDRTLVCLDGEGLFA 168

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
             L  R  R+ +        PV TV  + I W+AR++W 
Sbjct: 169 ADLRRRTVRTTEFAGRTPGEPVRTVPTARIAWMARVMWV 207


>gi|254471620|ref|ZP_05085021.1| dna-binding protein rdga [Pseudovibrio sp. JE062]
 gi|211958822|gb|EEA94021.1| dna-binding protein rdga [Pseudovibrio sp. JE062]
          Length = 214

 Score =  151 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H+ +W A+D+MA+RH LTPSGLAR+AGLDPTSFN SKRF  +GR RWPSTES+ K+L
Sbjct: 1   MLDHENLWAALDKMAKRHQLTPSGLARRAGLDPTSFNPSKRFAADGRPRWPSTESLAKVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T  T      L       +    +  P        +            + +      +
Sbjct: 61  EVTQMTFVDFAGLLQDKTEISGTHFRSFP----AYLCTSDELREVDLEDLSGFQLDKFCD 116

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                +   +   +    +    S  P YR+G ILI++    +   D +LI  +TGD+  
Sbjct: 117 SFIFPS---SQSEKFFALEVSSNSFEPYYREGQILIVSPESSLRRNDHVLIATKTGDLHC 173

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             L  +    I+            V+++D+ W ARILW SQ
Sbjct: 174 GPLQRQTNERIEFRRHTPDDTPRVVQVADLVWTARILWVSQ 214


>gi|170741440|ref|YP_001770095.1| peptidase S24/S26 domain-containing protein [Methylobacterium sp.
           4-46]
 gi|168195714|gb|ACA17661.1| peptidase S24 and S26 domain protein [Methylobacterium sp. 4-46]
          Length = 209

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/219 (36%), Positives = 117/219 (53%), Gaps = 12/219 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH +IW AID +A+RH LTPSGLA++AGLDPTSFN+SKR   +GR RWPSTES+ KIL
Sbjct: 1   MLSHDRIWSAIDHLAQRHRLTPSGLAKRAGLDPTSFNRSKRVAPDGRRRWPSTESLAKIL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           AAT  T+ + + L              +PL+        G       PTG+ W+ +  P+
Sbjct: 61  AATGATLDEFVQLVS---PRAAAGAAVVPLIGSAALAVAGRIGPDGRPTGSAWDELDFPD 117

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           + +               + Q   + PLY  GD+L++ +   +  GDR+L+  RTG +V 
Sbjct: 118 LGTQ---------DCFAIEVQGNDLRPLYHDGDVLVVCATAPMRRGDRILVSLRTGALVG 168

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
            VL  R  R  DL  +       ++  ++I W+ARI+W 
Sbjct: 169 AVLRRRTARVADLAPVMPGEAARSIATAEIAWMARIMWV 207


>gi|114328547|ref|YP_745704.1| DNA-binding protein RDGA [Granulibacter bethesdensis CGDNIH1]
 gi|114316721|gb|ABI62781.1| DNA-binding protein RDGA [Granulibacter bethesdensis CGDNIH1]
          Length = 221

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 106/225 (47%), Gaps = 9/225 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             H+ IW AID +A    L+ SGLAR+AGLD T+FN SKR   +GR RWPSTESI KIL 
Sbjct: 1   MKHEDIWRAIDTLAAIKGLSTSGLARRAGLDATTFNLSKRQMPDGRQRWPSTESISKILV 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           AT E++     L       +    +        P  S           G       +P  
Sbjct: 61  ATGESLGAFTSLVNGAETLSADSGQNTHYGRRIPLFSLPELRDLPIK-GEGN---ALPSA 116

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG----- 178
           R   +       +    +  DTS+ PL+R+G ILI++    +  GDR++++         
Sbjct: 117 RDETSLPDVADREAYGIEIHDTSLAPLFREGTILIVSPNAPLRRGDRVIVRLAAHDGEPS 176

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           + V      R  R +D+ SLN      ++ ++ + WI RI+WASQ
Sbjct: 177 ETVFGHFHRRSARWMDISSLNGDKAERSISLTSLVWIHRIVWASQ 221


>gi|160932990|ref|ZP_02080379.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753]
 gi|156868064|gb|EDO61436.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753]
          Length = 222

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 21/213 (9%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + E   L+  G A K G+  ++    +       +R P+ +++ +I      ++  
Sbjct: 20  RLKELRENAGLSQYGFAEKIGISQSTVGNWEAG-----SREPNFKTMERIADFFGVSVDY 74

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           LL      G   E        +             G  P G     +             
Sbjct: 75  LLGRETVAGGPPEPSVPGSKWIPVI----------GTIPAGTPVEAIEDILDYEEITPQM 124

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
           A Q +    K +  SM P    GD++I+        G+  ++     +   K +  +   
Sbjct: 125 ASQGEHFALKIKGQSMEPKISDGDVVIVRKQDDCENGEIAVVLVNGDEATVKRI-KKGPE 183

Query: 192 SIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219
            + L+  N  Y       ++IE      I +++
Sbjct: 184 GLMLIPNNPAYEPMFYSNAEIESLPVSIIGKVV 216


>gi|238021090|ref|ZP_04601516.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147]
 gi|237868070|gb|EEP69076.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147]
          Length = 351

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 61/237 (25%), Gaps = 25/237 (10%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           SH  + + +    E+  ++   L +      ++    +    +G        +I KI   
Sbjct: 118 SHSTLKDRLIYAREQKGISQEQLGKAINKSQSAIAALETGRNQGST------NIAKIAEV 171

Query: 65  TNETICQLLDLPFSDGRTTEKK-------------EKEIPLLYFPPSGSGGFFDSGVFPT 111
              +   L          +                      L         F        
Sbjct: 172 LGVSAIWLETGQGEMYPQSTTPRINEITDIHRPILWSSNTPLPEDDYVFVPFLKETELRG 231

Query: 112 GNKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
           G     +       +P  +S  +    +            SM P   +   + ++  I+ 
Sbjct: 232 GAGSFEIPDYNGFRLPFGKSTLHRKGIMPDNVICCTLTGDSMEPRIPEYATIAVDKGIER 291

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
               ++           K L    G  + + S N  Y  + V   +I  I R+ W S
Sbjct: 292 IRDGKIYAFQHDDLFRVKYLYRLPGNKVRIRSDNENYEDEIVSGEEIRVIGRVFWWS 348


>gi|330992988|ref|ZP_08316928.1| hypothetical protein SXCC_02890 [Gluconacetobacter sp. SXCC-1]
 gi|329759941|gb|EGG76445.1| hypothetical protein SXCC_02890 [Gluconacetobacter sp. SXCC-1]
          Length = 223

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 74/183 (40%), Gaps = 12/183 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH  IW AIDR+A    LTPSGLAR AGLD T+FN SKR    GR RWP TES+ + L
Sbjct: 1   MISHDDIWRAIDRLAAERGLTPSGLARAAGLDSTTFNPSKRITPSGRPRWPGTESLARTL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLL---YFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +AT  +      L                 L    F        FD    P G +W    
Sbjct: 61  SATGISFEGFSRLLSGHHDPETTNRAHHSHLKIAPFSQLAHPELFDETGLPEGERWEKWE 120

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              +   H                  +M P++RKG  L+++    +   DR+L+    G 
Sbjct: 121 FHGMADHH---------SYAVHVDCDTMEPIFRKGGTLVVSPTAAIRVHDRVLLHTPQGT 171

Query: 180 IVA 182
              
Sbjct: 172 ACC 174


>gi|229528221|ref|ZP_04417612.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)]
 gi|261212926|ref|ZP_05927210.1| predicted transcriptional regulator [Vibrio sp. RC341]
 gi|297580070|ref|ZP_06941997.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385]
 gi|229334583|gb|EEO00069.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)]
 gi|260837991|gb|EEX64668.1| predicted transcriptional regulator [Vibrio sp. RC341]
 gi|297535716|gb|EFH74550.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385]
          Length = 237

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + + I E I R+ +   LT   +A   G+ PTS    +R         P   ++  +  
Sbjct: 1   MTRETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETT-----PKGSNLIALCK 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGNKWN 116
                   L     +   T    E    +  +  +   G       F        GN + 
Sbjct: 56  KLRVDPLWLQTGKGTQDSTAGNAELLGNMQVWDSNTPLGDDEVAVPFLSDVRLSAGNGFV 115

Query: 117 TVGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +    +         +                    SM P+   G  + ++   +     
Sbjct: 116 SDSESDNGFRLRFAKSTLRRYNVDPENAVCVAITGDSMEPVLPNGSTVGIDCGDKTLIDG 175

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIE-----WIARILWAS 222
           ++      G++  K L    G  + + S N   YP        +       + R+ W S
Sbjct: 176 KIYAINHNGELFIKKLYRLPGGGLRIYSFNEIEYPPREYSQEQVAEQQISIVGRVFWYS 234


>gi|295103878|emb|CBL01422.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Faecalibacterium prausnitzii SL3/3]
          Length = 210

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 17/211 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  ++  ++ + LA + G+   +  K +          P   ++ +I    N T   L
Sbjct: 7   LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKS-----SPDPSTVARIAELLNTTADYL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L L       +  +E+             G            +  +   E          
Sbjct: 62  LGLYRPVSNVSAPEERFFGSYTESLIPVIGT-------VKAGYGALAFEEDYGQEYARVK 114

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191
             +       +  SM P  + GD+ +++    +  GD  +LI    G+   K  I +RG 
Sbjct: 115 DPSNYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLIYGDEGEGTLKRYI-QRGN 173

Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            + L   N  Y    +   D   +    R++
Sbjct: 174 CVVLQPFNPAYHEMVIRGEDLNHLHIAGRVV 204


>gi|160942797|ref|ZP_02090038.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445962|gb|EDP22965.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii
           M21/2]
          Length = 210

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 17/211 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  ++  ++ + LA + G+   +  K +          P   ++ +I    N T   L
Sbjct: 7   LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKS-----SPDPSTVARIAELLNTTADYL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L L       +  +E+             G            +  +   E          
Sbjct: 62  LGLYRPVSNVSAPEERFFGSYTESLIPVIGT-------VKAGYGALAFEEDYGQEYARVK 114

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191
                     +  SM P  + GD+ +++    +  GD  +LI    G+   K  I +RG 
Sbjct: 115 DPANYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLIYGDEGEGTLKRYI-QRGN 173

Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            + L   N  Y    +   D   +    R++
Sbjct: 174 CVVLQPFNPAYHEMVIRGEDLNHLHIAGRVV 204


>gi|313114612|ref|ZP_07800120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623076|gb|EFQ06523.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 210

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 17/211 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  ++  ++ + LA K G+   +  K +          P   ++ +I    N T   L
Sbjct: 7   LKQCRKKQGISQAELASKLGVTQQAVGKWESGKS-----SPDPSTVARIAELLNTTADYL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L L       +  +E+             G            +  +   E          
Sbjct: 62  LGLYRPVSNVSAPEERFFGSYSESLIPVIGT-------VKAGYGALAFEEDYGQEYARVK 114

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191
             +       +  SM P  + GD+ +++    +  GD  +LI    G+   K  I +RG 
Sbjct: 115 DPSNYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLIYGDEGEGTLKRYI-QRGN 173

Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            + L   N  Y    ++  D   +    R++
Sbjct: 174 CVVLQPFNPAYSEMVIKGEDLNHLHIAGRVV 204


>gi|153001880|ref|YP_001367561.1| putative phage repressor [Shewanella baltica OS185]
 gi|151366498|gb|ABS09498.1| putative phage repressor [Shewanella baltica OS185]
          Length = 229

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 21/228 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I +  +    T   +A+K GL   + +  +          P  E++  +  A + +  
Sbjct: 4   ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGST-----SPKGENLHALAKALSCSPE 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNKW-NTVGV--- 120
            LL         +  +      ++   +          F+       G+   ++      
Sbjct: 59  YLLFGNKETKPESNAEWAGGFEIWDSDTPLGEDEVEIPFYMEVELAAGDGILDSREFKGP 118

Query: 121 --PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                +S               K    SM P+      + ++++       ++      G
Sbjct: 119 KLRFTKSTLKRQGVNSDYAACVKVNGNSMEPILPHSSTVGVDTSATDVIDGKMYAVNHDG 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS---DIEWIARILWAS 222
            +  KVL    G  + L S N   YP + ++      ++ I ++ W S
Sbjct: 179 MLRIKVLYKLPGGGLRLRSYNTDEYPDERLDAEQVKQVKVIGKVFWYS 226


>gi|262402969|ref|ZP_06079529.1| predicted transcriptional regulator [Vibrio sp. RC586]
 gi|262350468|gb|EEY99601.1| predicted transcriptional regulator [Vibrio sp. RC586]
          Length = 237

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 25/239 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + + I E I R+ +   LT   +A   G+ PTS    +R         P   ++  +  
Sbjct: 1   MTRETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETT-----PKGSNLIALCK 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGNKWN 116
                   L     +   T    E    +  +  +   G       F        GN + 
Sbjct: 56  KLRVDPLWLQTGKGTQDSTAGNAELLGNMQVWDSNTPLGDDEVAVPFLSDVRLSAGNGFV 115

Query: 117 TVGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +    +         +                    SM P+   G  + ++   +     
Sbjct: 116 SDSESDNGFRLRFAKSTLRRYNVDPENAVCVAITGDSMEPVLPNGSTVGIDCGDKTLIDG 175

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDT-----VEMSDIEWIARILWAS 222
           ++      G++  K L    G  + + S N   YP        V    I  + R+ W S
Sbjct: 176 KIYAINHNGELFIKKLYRLPGGGLRIYSFNEIEYPPREYLQEQVAEQQISIVGRVFWYS 234


>gi|315650040|ref|ZP_07903120.1| LexA repressor [Eubacterium saburreum DSM 3986]
 gi|315487810|gb|EFU78113.1| LexA repressor [Eubacterium saburreum DSM 3986]
          Length = 213

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 72/216 (33%), Gaps = 16/216 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I +      L+   +A + G +  +  + +   IE      + E I KIL  T   
Sbjct: 3   IGERIKQRRRELGLSVDEVADRLGKNRATVYRYESNDIENFPVG-TLEPIAKILETTPAK 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +              E  EK   +             +   P     + +   EI    +
Sbjct: 62  LMGWNSNDNLPNGNPEPHEKPRGVKIPVLGDV-----AAGIPIEAIEDIIDYEEI----D 112

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
              A + +    + +  SM P  + GD++I+      + GD ++ K    D   K L   
Sbjct: 113 EDLARRGEFFGLRIKGNSMSPRIQNGDVVIVRVQPDADSGDIVITKVNGYDACCKRLQKH 172

Query: 189 RGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219
               I L+SLN  Y        D     +  I +++
Sbjct: 173 DDG-ISLISLNPDYEPMFFSKKDIIDLPVNIIGKVV 207


>gi|160876601|ref|YP_001555917.1| putative phage repressor [Shewanella baltica OS195]
 gi|160862123|gb|ABX50657.1| putative phage repressor [Shewanella baltica OS195]
 gi|315268797|gb|ADT95650.1| putative phage repressor [Shewanella baltica OS678]
          Length = 229

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 21/228 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I +  +    T   +A+K GL   + +  +          P  E++  +  A + +  
Sbjct: 4   ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGST-----SPKGENLHALAKALSCSPE 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNKW-NTVGV--- 120
            LL         +  +      ++   +          F+       G+   ++      
Sbjct: 59  YLLFGNKETKPESNAEWAGGFEIWDSDTPLGEDEVEIPFYMEVELAAGDGILDSREFKGP 118

Query: 121 --PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                +S               K    SM P+   G  + ++++       ++      G
Sbjct: 119 KLRFTKSTLKRQGVNSDYAACVKVNGNSMEPILPHGSTVGVDTSATDVIDGKMYAVNHDG 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI---EWIARILWAS 222
            +  KVL    G  + L S N   YP + ++   +   + I ++ W S
Sbjct: 179 MLRIKVLYKLPGGGLRLRSYNTDEYPDERLDTDQVKQIKVIGKVFWYS 226


>gi|220935647|ref|YP_002514546.1| putative phage repressor [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996957|gb|ACL73559.1| putative phage repressor [Thioalkalivibrio sp. HL-EbGR7]
          Length = 230

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 25/230 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  +      + + LA++ G+   S    +R       R P  + + K++ A    
Sbjct: 5   IGERIAHIRGSR--SQAALAQQLGVHKNSIGNYERGE-----RTPDADFLRKLMDAGYNA 57

Query: 69  IC----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--------WN 116
                 +             +   E  +       +           G+          +
Sbjct: 58  NWVITGEGPMRLGEPEPAAPQAAPEHMIQEVGEEYALVPLYDVRAAAGHGAVVEEEQVTD 117

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKP 175
           ++        H  ++A             SM P  R GD+++++  + Q    D + +  
Sbjct: 118 SLAFKRQWI-HQELHANPADLYLIYVDGESMEPTLRPGDVILVDRRSAQAVPRDGIYVLR 176

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV----EMSDIEWIARILWA 221
             G ++ K L    GR + + S N  Y    +       D+  I R++W+
Sbjct: 177 MDGSLLVKRLQRLPGRKVKVTSDNPAYEPFELALDTPGEDLAIIGRVVWS 226


>gi|170023456|ref|YP_001719961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|169749990|gb|ACA67508.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis
           YPIII]
          Length = 209

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 82/210 (39%), Gaps = 14/210 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + I R  E  +++ + LA++ G      ++S+    E  +R  S E    +  A N
Sbjct: 2   ETIGQRIKRFREELSISQAELAQRCGW----LSQSRIGNYETDSRKVSVEDAVVLAKALN 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L+     +   T   E+ +PL+ +  +G+       +         V      S 
Sbjct: 58  VNPGELILGTPDNASFTSAGERYLPLVSYVQAGTFTEP-DNLLSAEGAKGHVMYDGPISE 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                         K +  SM P +++GD +I++  +  + G+ ++ K    +   K   
Sbjct: 117 V---------AFALKIKGDSMEPEFKEGDTIIIDPMVAPHPGEFVIAKNGDHEATFKKYR 167

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            +   S +L+ LN  YP    ++  ++ I 
Sbjct: 168 LKANGSFELVPLNPDYPTIDSDIQPVKIIG 197


>gi|254240372|ref|ZP_04933694.1| hypothetical protein PA2G_01019 [Pseudomonas aeruginosa 2192]
 gi|126193750|gb|EAZ57813.1| hypothetical protein PA2G_01019 [Pseudomonas aeruginosa 2192]
          Length = 243

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 71/237 (29%), Gaps = 29/237 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  +   H ++P+ L+R+ G+  ++ ++       G+   P  E ++ I      +
Sbjct: 6   IQHILAALLAEHGISPTELSRRTGVGQSTISRILN----GKIATPKDEQVYPIAEYFGLS 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKW 115
             QL               +E       P                  F        G+  
Sbjct: 62  TDQLRGRVSIGTAPIPAVVREPEATMDGPIEVWDDSTPLPSDEVLVPFLKEVELAAGSGK 121

Query: 116 NTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
            +V +   RS   G Y++                  SM P+ R G  + ++         
Sbjct: 122 MSVEMNSRRSLRFGKYSLKKQGVDPANARCVTITGNSMEPVLRNGATVGVDVGNTRIVDG 181

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS-----DIEWIARILW 220
            L      G +  K      G  I L S N   +P +          +IE I R+ W
Sbjct: 182 DLYAINHGGLLRVKQTYRLPGGGIRLRSFNRDEHPDEEYSKDEIVAQEIEIIGRVFW 238


>gi|295101168|emb|CBK98713.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Faecalibacterium prausnitzii L2-6]
          Length = 210

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 69/211 (32%), Gaps = 17/211 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  ++  ++ + LA K G+   +  K +          P   ++ +I    + T   L
Sbjct: 7   LKQCRKQKGISQAELASKLGVTQQAVGKWESGKS-----SPDPATVARIAEILSTTADFL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L L       T  +E+             G            +  +   E          
Sbjct: 62  LGLYRPVSNVTTPEERFFGNYAESLIPVIGT-------VKAGYGALAFEEDYGQEYARVK 114

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191
             +       +  SM P  + GD+ +++    +  GD  +L+    G+   K  I +RG 
Sbjct: 115 DPSNYFYLVVRGDSMEPRIQDGDLALVHKQDTLENGDLGVLVYGDEGEGTLKRYI-QRGN 173

Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            + L   N  Y    ++  D   +    R++
Sbjct: 174 CVVLQPFNPAYNELVIKGEDLNRLHIAGRVV 204


>gi|91794616|ref|YP_564267.1| transciptional regulator [Shewanella denitrificans OS217]
 gi|91716618|gb|ABE56544.1| transciptional regulator [Shewanella denitrificans OS217]
          Length = 229

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 69/228 (30%), Gaps = 21/228 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I +  +   LT   +A+  GL   + +  +          P  E++  +  A      
Sbjct: 4   ERIKQRRKELGLTQPSIAKTIGLTKATISLWESGST-----SPKGENLHALAKALRCAPE 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNKWNTVG----- 119
            LL    S       +       +   S          F+       G+           
Sbjct: 59  FLLFGNDSIKPEPNAEWAGGFETWGSNSPLGDDEVEIPFYMEVELAAGDGIIDCREYQGP 118

Query: 120 -VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +   +S               K    SM P+   G  + +++A       ++      G
Sbjct: 119 KLRFAKSTLKRQGVTSDHAACVKVNGNSMEPVLPNGSTVGVDTAHTDIVDGKMYAINHDG 178

Query: 179 DIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD---IEWIARILWAS 222
            +  K+L    G  + L S N   YP + ++  +   ++ I ++ W S
Sbjct: 179 MLRVKMLYKLPGGGLRLRSYNLDEYPDERLDAEELKQVKVIGKVFWYS 226


>gi|9635582|ref|NP_061565.1| cI repressor protein [Pseudomonas phage D3]
 gi|2493333|sp|Q37906|RPC1_BPD3 RecName: Full=Repressor protein CI
 gi|1085700|pir||A55847 cI repressor homolog - Pseudomonas aeruginosa phage D3
 gi|403436|gb|AAA53553.1| cI repressor protein [Pseudomonas phage D3]
          Length = 223

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 11/220 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I    +   LT + LA++ GLD TS +  ++   +G +       +      +  
Sbjct: 2   ELKDRIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQGTS---YIAQLASACGVSAL 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +        S+         E      P   + G    G F   +   T G+   R   
Sbjct: 59  WLAAGHGEMNSNKEALPGAPSEKDYALIPQYTARGECGDGYF-NDHVETTEGLVFKRDWL 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLI 186
             + +             SM P   +GD+++ +++          +I+   G +  K L 
Sbjct: 118 KRVNSKPENLFVIYADGDSMEPYIFEGDVVLFDTSKTDPQDKQVYVIRRPDGGVSIKRLN 177

Query: 187 SRRGRSIDLMSLNCC---YPVDTVEMSDIE---WIARILW 220
            +   +  + S N     YP +    S +     I R++W
Sbjct: 178 QQLTGAWLIRSDNPDKSAYPDEMASESSVHELPIIGRVIW 217


>gi|331017574|gb|EGH97630.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 228

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 9/216 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             + + I ++ +   L+   LA   G    +     ++       R PS + I KI    
Sbjct: 2   NTLGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGT-----RQPSLQDIRKIADTL 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVFPTGNKWNTVGVPEI 123
             +   L+     + +    K K+        +         +        ++ +  P  
Sbjct: 57  GVSFVDLVAFTDDNAQPLVVKLKDSAPRLTGKAKEGRVPVVGTAQLGNEGYFDALDFPPG 116

Query: 124 R-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +  I++        K    SMLP  + G+ +++        GD ++++   G  + 
Sbjct: 117 HGDGYLNIHSDDPDAYGLKVTGDSMLPRIKNGEFVLIEPNKSYVSGDEVMVRTAAGRTMI 176

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K  I  R       S+N  +P   +  ++I  I  +
Sbjct: 177 KEYIYLRDGMYRFDSVNAEHPPIHIAENEILEIHLV 212


>gi|289522427|ref|ZP_06439281.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504263|gb|EFD25427.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 216

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 18/219 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  + ++  +T + LAR+    P+  ++ +R       + PS   + KI      +
Sbjct: 2   LGERIRTLRKKMRMTATELARRVKTSPSHISEIERGE-----KTPSLNLLVKIAKELQTS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I  L  L     +     E  +       +       +GV+P       + VPE      
Sbjct: 57  IDYLTGLEGFSKKALNVTEVALLDQASVTAAGKALDQTGVYPV--VEEMIYVPEDALGPV 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
           G           +    SM+        I+++N   +V  GD + +     +   K + +
Sbjct: 115 GDIPP----FAVRISGESMIGAGITDNSIVVINPNAEVGQGD-VALVSIGNEWTVKYIYT 169

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARILWA 221
           +   S++L   N  Y     +  D     ++ I +++W 
Sbjct: 170 KADGSLELRPANPSYSPIFFDKEDLISGLVKVIGKVVWI 208


>gi|213968238|ref|ZP_03396382.1| phage repressor [Pseudomonas syringae pv. tomato T1]
 gi|301381283|ref|ZP_07229701.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13]
 gi|302062899|ref|ZP_07254440.1| putative phage repressor [Pseudomonas syringae pv. tomato K40]
 gi|213926876|gb|EEB60427.1| phage repressor [Pseudomonas syringae pv. tomato T1]
          Length = 228

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 9/216 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             + + I ++ +   L+   LA   G    +     ++       R PS + I KI    
Sbjct: 2   NTLGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGT-----RQPSLQDIRKISDTL 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVFPTGNKWNTVGVPEI 123
             +   L+     + +    K K+        +         +        ++ +  P  
Sbjct: 57  GVSFVDLVAFTDDNAQPLVVKLKDSAPRLTGKAKEGRVPVVGTAQLGNEGYFDALDFPPG 116

Query: 124 R-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +  I++        K    SMLP  + G+ +++        GD ++++   G  + 
Sbjct: 117 HGDGYLNIHSDDPDAYGLKVTGDSMLPRIKNGEFVLIEPNKSYVSGDEVMVRTAAGRTMI 176

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K  I  R       S+N  +P   +  ++I  I  +
Sbjct: 177 KEYIYLRDGMYRFDSVNAEHPPIHIAENEILEIHLV 212


>gi|313885531|ref|ZP_07819281.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619261|gb|EFR30700.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 213

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 72/213 (33%), Gaps = 16/213 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            + +  +  +  +T   +A   G   T S +  +          P+  +I KI +     
Sbjct: 8   GKNLKYLRNKKGITQQEIADLIGRKSTGSVSDWEAGRTT-----PNAGNISKIASYFGLK 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I  +++       +       I      P        + +    N  +++  P    P  
Sbjct: 63  IDAMVEYDLQTQASAPSNLIPIKQTKLIPVIGRIACGAPILADQNIIDSIAFPVELLPS- 121

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187
                  +    + +  SM+P  +   ++++     V  G+  +++     +   K +  
Sbjct: 122 ------GEIFFLECRGDSMMPTIQDKALVMVRKQENVEDGEIAVVLLNGDEEATLKRIKR 175

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
           + G  I L+  N  +P   ++ +D I  + + +
Sbjct: 176 Q-GDLIMLLPDNTNHPPIVIQPTDTIRIVGKAI 207


>gi|148912804|ref|YP_001293383.1| Repressor protein [Pseudomonas phage F10]
          Length = 224

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 17/223 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ ++I    +   LT + LA++ GLD TS +  ++   +G      T  I ++ AA   
Sbjct: 2   ELKDSIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQG------TAYIAQLAAACGV 55

Query: 68  TICQLLDLPFSDGRTTEKKEK---EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           +   L     S     E   +   E      P   + G    G F   +   T G+   R
Sbjct: 56  SALWLAAGHGSMNNNEEVPPRAPSEKDYALIPQYTARGECGDGYF-NDHVETTEGLVFKR 114

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAK 183
                + +          +  SM P   +GD+++ + A  +       +I+   G I  K
Sbjct: 115 DWLKRVNSKPENLFVIYAEGDSMEPYIFEGDVVLFDVAKIEPQDKQVYVIRRPDGGISIK 174

Query: 184 VLISRRGRSIDLMSLNCC---YPVDTVEMSDIE---WIARILW 220
            L  +   +  + S N     YP +    + +     I R++W
Sbjct: 175 RLNQQLSGAWLIRSDNPDKTAYPDEIASETSVHDLPIIGRVIW 217


>gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 196

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 26/211 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I R+ E   L+   LARKAGL     +  +          PS +S+ K+  A    
Sbjct: 4   VGETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRT-----SPSLKSLEKLAGALQVA 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             QLL              +    +   P          V       + + +P   +   
Sbjct: 59  PGQLLQGQD----------RFSSQVVEVPVLGRVPAGGPVVSEEVILDYLPLPRKLAS-- 106

Query: 129 GIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                       + +  SM       GD +++        G  ++ +   G++  K    
Sbjct: 107 ------EDTFCLEVRGESMQDLGIDSGDYVLVRLQPTAENGQVVIAR-VEGEVTCKRYYR 159

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              R + L   N  +    +E  +IE +  +
Sbjct: 160 -TDRVVSLEPANRRFRPLRLEAGEIEIVGVV 189


>gi|218133316|ref|ZP_03462120.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992189|gb|EEC58193.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC
           43243]
          Length = 217

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 21/218 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +++ I        ++   LA   G  D +S  K ++  ++      S   I +   A  
Sbjct: 9   NLYKNIRERRIELKMSQDTLAELTGYRDRSSIAKIEKGEVD-----ISESKIREFAKALK 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +  +L+     + +T    +    ++              +  T +  +T  +PE    
Sbjct: 64  VSPGELMGWDEHNSQTEHTPQGHKGVV--INVLGRVAAGIPIEATTDIIDTEEIPEEM-- 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                A        K +  SM P    GD++I+    +   GD ++      D   K L 
Sbjct: 120 -----AKTGDFFALKIKGNSMEPRIMDGDVVIVRKQDEAENGDVIIAMVNGDDATCKRLR 174

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219
             +   I+L+S N  Y        D     +  I +++
Sbjct: 175 KYKDG-IELISNNPSYKPMFFSDMDVQTKPVRIIGKVV 211


>gi|257440049|ref|ZP_05615804.1| SOS-response transcriptional repressor [Faecalibacterium
           prausnitzii A2-165]
 gi|257197401|gb|EEU95685.1| SOS-response transcriptional repressor [Faecalibacterium
           prausnitzii A2-165]
          Length = 209

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 68/211 (32%), Gaps = 18/211 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  ++ +++ + LA   G+   +  K +          P   ++ K+     +T    
Sbjct: 7   LRQCRKQKHMSQAELASLLGVTQQAVGKWESGKS-----SPDPTTVAKLAEIL-DTTADY 60

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L   F      + +E+      +      G            +  +   E          
Sbjct: 61  LLGLFDPTAEGQTEERFFGSYVYSLIPVIGT-------VKAGYGALAYEEDYGKEYARVK 113

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGR 191
             +       +  SM P    GD+ +++    +  GD  +LI    G+   K  + +RG 
Sbjct: 114 DPSSYFYLVVRGDSMEPRIHDGDLALVHRQDTLENGDLGVLIYGDEGEGTLKRYL-QRGN 172

Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            + L   N  Y    ++  +   +    R++
Sbjct: 173 CVVLQPFNPAYKEMVIKGEELNHLHIAGRVV 203


>gi|167769359|ref|ZP_02441412.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM
           17241]
 gi|167668327|gb|EDS12457.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM
           17241]
          Length = 205

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 59/212 (27%), Gaps = 25/212 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  + +   ++   LA++ G+   +  K +          P   ++  I      +  
Sbjct: 10  ERLKALRKECGISQRALAQRLGVSQQAVAKWEAASST-----PGPNALATIADVLGVSSD 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            LL          +   +   L                      +      E        
Sbjct: 65  YLLGRERDFQDGAQDTARLPVLGT----------------VKAGYGAYAFEEDYGTAPAQ 108

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                       +  SM P    GD+ +++    V  G+  ++     +   K +I +  
Sbjct: 109 VRDPRDYFYLIVRGDSMEPRIHSGDLALVHRQPDVESGELAVVLVAGEEGTLKRVIKKE- 167

Query: 191 RSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
            ++ L   N  Y        E+  +  I +++
Sbjct: 168 GAVILQPFNQAYQPQVFIGEELEQLVIIGKVV 199


>gi|254494052|ref|ZP_05107223.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|226513092|gb|EEH62437.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
          Length = 243

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 68/234 (29%), Gaps = 28/234 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------- 63
           + +    +  NL+   LA+ A +  ++    +    +      +   + KIL        
Sbjct: 13  DRLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNKKAT---NIAKLAKILDVSAFWLE 69

Query: 64  --------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                              +  +              +  + + Y   S   G   +   
Sbjct: 70  TGEGSRNTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEI 129

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           P  N +    +P  +S                    SM     +   + +++        
Sbjct: 130 PDYNGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDG 186

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
           ++    + G    K LI + G S+ + S N   YP +T  +  +  I R+ W S
Sbjct: 187 KIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETASLDSLTVIGRVFWWS 240


>gi|331674164|ref|ZP_08374924.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli
           TA280]
 gi|331068258|gb|EGI39653.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli
           TA280]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 15/226 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +    +    I ++ +    + + LARK G+   S              +P    + +
Sbjct: 1   MKNLKSTE--NRITKLLQEKGWSQAELARKLGVSAQSVQYWTTGKT-----FPRGNRLAQ 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN--- 116
           +   +       L    S   ++++K +              F    G    G+  +   
Sbjct: 54  LSEISGYPQSWFLGEITSRQFSSKEKHQTRTDSVVFNVLDVEFSCGDGTHVRGDFIDVVR 113

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           ++ +    +                 +  SM P    GD+L L+  +    GD +     
Sbjct: 114 SIELDPEYARRLVGNRAFQNIEIGNARGDSMAPTIAPGDLLFLDKTVNYFDGDGIYAFCF 173

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
            G+   K L    G  I ++S N  Y   ++E   +E     ++++
Sbjct: 174 DGECYVKRLQKI-GSKIMVLSDNPNYQSWSIEKDALELLYIQSKVI 218


>gi|221213964|ref|ZP_03586937.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein)
           [Burkholderia multivorans CGD1]
 gi|221166141|gb|EED98614.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein)
           [Burkholderia multivorans CGD1]
          Length = 257

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 21/236 (8%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S + +   +        L+   LAR+ G+      + +    +G        ++ + L  
Sbjct: 17  SMETLGSRVKAARLDAKLSQEALARQVGVSQGLIGQIESGKNQGSKH---LAALARALGV 73

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--------GGFFDSGVFPTGNKWN 116
           + + +              +  E +  +L +                     F  G    
Sbjct: 74  SADWLETGKGPRERAVGQHKIPEDQGNVLVWEHPDDLPPDENRVWLDRYDYRFSAGTGLI 133

Query: 117 TVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                    +P        + +        +    SM P     D++++++A       +
Sbjct: 134 QWEVRQKKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTAKTHIRDGK 193

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEM---SDIEWIARILWAS 222
           +      G+ + K +  + G SI L S+N   YP   V       +  +  +++ S
Sbjct: 194 VYAIYFEGEPLVKQIFKQAGGSICLHSINSGKYPDKIVTPELMESVTIMGEVIYRS 249


>gi|312967403|ref|ZP_07781618.1| helix-turn-helix family protein [Escherichia coli 2362-75]
 gi|312287600|gb|EFR15505.1| helix-turn-helix family protein [Escherichia coli 2362-75]
          Length = 255

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 15/226 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +    +    I ++ +    + + LARK G+   S              +P    + +
Sbjct: 27  MKNLKSTE--NRITKLLQEKGWSQAELARKLGVSAQSVQYWTTGKT-----FPRGNRLAQ 79

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN--- 116
           +   +       L    S   ++++K +              F    G    G+  +   
Sbjct: 80  LSEISGYPQSWFLGEITSRQFSSKEKHQARTDSVVFNVLDVEFSCGDGTHVRGDFIDVVR 139

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           ++ +    +                 +  SM P    GD+L L+  +    GD +     
Sbjct: 140 SIELDPEYARRLVGNRAFQNIEIGNARGDSMAPTIAPGDLLFLDKTVNYFDGDGIYAFCF 199

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
            G+   K L    G  I ++S N  Y   ++E   +E     ++++
Sbjct: 200 DGECYVKRLQKI-GSKIMVLSDNPNYQSWSIEKDALELLYIQSKVI 244


>gi|126175811|ref|YP_001051960.1| putative phage repressor [Shewanella baltica OS155]
 gi|125999016|gb|ABN63091.1| putative phage repressor [Shewanella baltica OS155]
          Length = 233

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E      +  NLT   L++K G+   + ++ +          P  E+++K+  A  
Sbjct: 2   KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDT-----SPKGENLYKLAQALQ 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--------SGGFFDSGVFPTGNKW-NT 117
            +   L+     + +  E   +         +            F+       G      
Sbjct: 57  CSPDWLMFGDSKNTKKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYMDVELSAGEGIAEG 116

Query: 118 VG-----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           V      +   +S               K    SM P+   G  + ++++       ++ 
Sbjct: 117 VEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMY 176

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222
                G +  K+L    G  + L S N   +P + +       I+ I ++ W S
Sbjct: 177 AINHDGMMRVKMLYKLPGGGLRLRSYNTDEWPDEHINNEQLKNIKVIGKVFWYS 230


>gi|296114602|ref|ZP_06833255.1| hypothetical protein GXY_02456 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978958|gb|EFG85683.1| hypothetical protein GXY_02456 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 221

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH+ IW A+D +A    +TPSGLAR AGLD T+FN SKR    GR RWP TES+ + L
Sbjct: 1   MISHEDIWRALDLLATERGMTPSGLARAAGLDSTTFNPSKRMTSSGRPRWPGTESLARTL 60

Query: 63  AATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +AT  ++      +     R        + ++ F   G    FD    P+G++W T    
Sbjct: 61  SATGISLEGFGRLMTGHGDRLGGTHHAHLMIVPFSELGQAELFDESGLPSGDRWETWDFH 120

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
            +   H                  +M P++R G +L+++    +   DR+L+        
Sbjct: 121 GLADHH---------SYAVLVDSDNMEPIFRAGTVLVVSPTAAIRQHDRVLLHGPDSHAC 171

Query: 182 A 182
            
Sbjct: 172 C 172


>gi|162145992|ref|YP_001600450.1| hypothetical protein GDI_0160 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209544371|ref|YP_002276600.1| hypothetical protein Gdia_2230 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161784566|emb|CAP54103.1| conseved protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532048|gb|ACI51985.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 217

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 93/234 (39%), Gaps = 34/234 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H  +W+A+D +A    LTPSGLAR AGLD TSFN SKR    GR RWP TES+ ++L
Sbjct: 1   MMRHDDLWQALDNLAAERGLTPSGLARAAGLDSTSFNPSKRVTPAGRPRWPGTESLARVL 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---GGFFDSGVFPTGNKWNTVG 119
            AT  T+     L          +      L          GG FD+   P G  W +  
Sbjct: 61  DATGLTLESFGRLMAGQALPRASRAAGRSRLRLSALSHLEQGGMFDAAGLPVGRHWESWD 120

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           VP +            +         +  P++R G  L+++SA  +   DR+++      
Sbjct: 121 VPGLGD---------AELYAVMVDTDAFEPVFRAGAFLVVSSAAAIRRQDRVILHRADAT 171

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPV------------DTVEMSDIEWIARILWA 221
           + A VL  R G           Y                +E    + + RI+ A
Sbjct: 172 LCAVVLDPRPG----------AYDPGPLLGGIGARDGMEIETGPTDHLHRIMMA 215


>gi|238762739|ref|ZP_04623708.1| Phage-related repressor protein [Yersinia kristensenii ATCC 33638]
 gi|238699044|gb|EEP91792.1| Phage-related repressor protein [Yersinia kristensenii ATCC 33638]
          Length = 240

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 73/207 (35%), Gaps = 7/207 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
                 ++ +  +H ++ S LA+ +G+      +      +     P  E + KI    N
Sbjct: 21  DDFAARLNSLMSKHEISVSSLAKLSGVSYEMARRYTLGTAK-----PRDEKMLKIADHLN 75

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L     +   T    +          + +G  + +  FP     +++ +PE +  
Sbjct: 76  VSPAFLDYGTMTGRDTEADSKVVKLRQLEVFASAGHGYINNEFPA--VISSIEIPEDKIY 133

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                              SM+P     D+L +++ I    GD + +         K L 
Sbjct: 134 ELFGRKSLDGIHLMNVDGDSMMPTLHPRDLLFIDTKIDHFNGDGVYVFNFEDSTFVKRLQ 193

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE 213
             +GR + ++S N  YP   +E +++ 
Sbjct: 194 KVKGRRLSVLSDNDKYPPFFIEANEMN 220


>gi|152999279|ref|YP_001364960.1| putative phage repressor [Shewanella baltica OS185]
 gi|151363897|gb|ABS06897.1| putative phage repressor [Shewanella baltica OS185]
          Length = 240

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + + I    +   +T   L    G+   +  + ++         P   ++F +  +  
Sbjct: 11  KTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDET-----APKGANLFALAKSLK 65

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKW-NTVG 119
             +  LL+   +    +  +      L+              F+       G      + 
Sbjct: 66  CDLSWLLNGQIATKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGIVEGIE 125

Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                +   +S               K    SM P+   G  + ++++       ++   
Sbjct: 126 YKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMYAI 185

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMS---DIEWIARILWAS 222
              G +  K+L    G  + L S N   YP + ++      ++ I ++ W S
Sbjct: 186 NHDGMMRVKMLYKLPGGGLRLRSYNLDEYPDERLDADQLKQVKVIGKVFWYS 237


>gi|239999287|ref|ZP_04719211.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae 35/02]
          Length = 236

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 68/234 (29%), Gaps = 28/234 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------- 63
           + +    +  NL+   LA+ A +  ++    +    +      +   + KIL        
Sbjct: 6   DRLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNKKAT---NIAKLAKILDVSAFWLE 62

Query: 64  --------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                              +  +              +  + + Y   S   G   +   
Sbjct: 63  TGEGSRNTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEI 122

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           P  N +    +P  +S                    SM     +   + +++        
Sbjct: 123 PDYNGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDG 179

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
           ++    + G    K LI + G S+ + S N   YP +T  +  +  I R+ W S
Sbjct: 180 KIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETASLDSLTVIGRVFWRS 233


>gi|160875134|ref|YP_001554450.1| putative phage repressor [Shewanella baltica OS195]
 gi|160860656|gb|ABX49190.1| putative phage repressor [Shewanella baltica OS195]
 gi|315267325|gb|ADT94178.1| putative phage repressor [Shewanella baltica OS678]
          Length = 233

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E      +  NLT   L++K G+   + ++ +          P  E+++K+  A  
Sbjct: 2   KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDT-----SPKGENLYKLAQALQ 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--------SGGFFDSGVFPTGNKW-NT 117
            +   L+     + +  E   +         +            F+       G      
Sbjct: 57  CSPDWLMFGDSKNTKKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGIVEG 116

Query: 118 VG-----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           V      +   +S               K    SM P+   G  + ++++       ++ 
Sbjct: 117 VEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMY 176

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222
                G +  K+L    G  + L S N   +P + +       I+ I ++ W S
Sbjct: 177 AINHDGMMRVKMLYKLPGGGLRLRSYNTDEWPDEHINNEQLKNIKVIGKVFWYS 230


>gi|217971957|ref|YP_002356708.1| putative phage repressor [Shewanella baltica OS223]
 gi|217497092|gb|ACK45285.1| putative phage repressor [Shewanella baltica OS223]
          Length = 233

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E      +  NLT   L++K G+   + ++ +          P  E+++K+  A  
Sbjct: 2   KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDT-----SPKGENLYKLAQALQ 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--------SGGFFDSGVFPTGNKW-NT 117
            +   L+     + +  E   +         +            F+       G      
Sbjct: 57  CSPDWLMFGDSKNTKKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGITEG 116

Query: 118 VG-----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           V      +   +S               K    SM P+   G  + ++++       ++ 
Sbjct: 117 VEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMY 176

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222
                G +  K+L    G  + L S N   +P + +       I+ I ++ W S
Sbjct: 177 AINHDGMMRVKMLYKLPGGGLRLRSYNTDEWPDEHINNEQLKNIKVIGKVFWYS 230


>gi|255282221|ref|ZP_05346776.1| LexA repressor [Bryantella formatexigens DSM 14469]
 gi|255267169|gb|EET60374.1| LexA repressor [Bryantella formatexigens DSM 14469]
          Length = 206

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 68/218 (31%), Gaps = 26/218 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +I   I    E   +T   LA K G  + +S  K +    +          + +   A N
Sbjct: 3   EIGIRIREQREAIGMTQEELASKLGYKNKSSIAKIETGAND-----IVQSKVIEFADALN 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T+  L+          +                       +    +  +T  +PE    
Sbjct: 58  TTVSYLMGW-------EKTNVNSRKKGVTINVLGRVAAGIPIEAITDIIDTEEIPEEM-- 108

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                A   +    +    SM P + +GD++I+        GD ++      D   K L 
Sbjct: 109 -----AATGEFFGLQIHGDSMEPKFSEGDVVIVRQQDDAESGDIVIAMINGDDATCKRLR 163

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219
             R   I+L+S N  Y        DIE      I +++
Sbjct: 164 KYRDG-IELVSTNPSYEPMFFSNEDIEQKPVKIIGKVV 200


>gi|218665577|ref|YP_002425471.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|218517790|gb|ACK78376.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 243

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 20/232 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H++I  AI    ++   T + LA K G+   S ++     I  R   PS E++F++ 
Sbjct: 1   MELHERIKFAI----KQSGFTQNALAEKLGISRGSISQWVSGNIATRT-VPSRENLFRLA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG----FFDSGVFPTGNKW--- 115
             +   I  L     S     +K E  + +  +      G       +     G      
Sbjct: 56  ELSGVPIEWLWSGRESAAHKPQKPEGSLSVSEYQDEEGLGDGEVEIPALNLQVGAGSRIV 115

Query: 116 -----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                        RS             R +    SM P  + G  + ++ +       +
Sbjct: 116 CETIQEERKFRYARSWLQKYGLDSKYLFRVRVYGDSMEPYIKNGAWITVDKSRTNIQNGK 175

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
           + +     +I  K L  R    I + S N  YP   V  +D   I  I  ++
Sbjct: 176 IYVLRSGEEIQVKALFKRPDSGIIIRSNNPAYPDVQVSATDMEHIAIIGEVI 227


>gi|317054052|ref|YP_004118077.1| putative phage repressor [Pantoea sp. At-9b]
 gi|316952047|gb|ADU71521.1| putative phage repressor [Pantoea sp. At-9b]
          Length = 230

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 10/208 (4%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +D + +  NL+ + LAR AG+ P + N   + G  G+      +S  KI AAT   +  
Sbjct: 14  RLDELLKAANLSKADLARIAGVSPQAVNNWFKRGEIGK------DSAIKISAATGLDLSW 67

Query: 72  LLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           +L           +K   E+ ++    +G        V       + +           I
Sbjct: 68  VLGESDQMYSTPHQKPASEVEVVGNIMNGVIPVKGDAVLGMDGLIDMMEFHAGWL---RI 124

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           Y+   +    + +  SM P  + G+ +++    +V+ GD + I+   G  + K+L   R 
Sbjct: 125 YSDDREAYGVRVRGDSMWPRIQSGEFVVIEPNTKVHPGDEVFIRTSDGHNMIKILNYNRA 184

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                 S+N  +   T+ ++ ++ I  +
Sbjct: 185 GDYQFTSINNDHKPFTLPVNQVDKIHFV 212


>gi|114562824|ref|YP_750337.1| putative phage repressor [Shewanella frigidimarina NCIMB 400]
 gi|114334117|gb|ABI71499.1| putative phage repressor [Shewanella frigidimarina NCIMB 400]
          Length = 230

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 22/232 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + + I    +   LT   LA +A +     +K      +  ++      +  I     
Sbjct: 2   KTLAQNIQEKLKASGLTQKELAERANISQVMVHKLISGKAKESSK------LVAIAGVLG 55

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFP------PSGSGGFFDSGVFPTGNKWNTVG- 119
            T  +L+        T+  +       +              F+       G+       
Sbjct: 56  CTAEELMYGLEKHVPTSNAEWAGPMETWDSNTPLNDDEVEIPFYMEVELAAGHGIAEASE 115

Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                +   +S         T     +    SM P+   G  + ++++       ++   
Sbjct: 116 YHGPKLRFAKSTLRKSSVDPTNAACVRVSGNSMEPVLPSGSTVGVDTSQTDVIDGKMYAI 175

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMS---DIEWIARILWAS 222
              G +  K L    G  + L S N   +P +  E      I+ I ++ W S
Sbjct: 176 NHDGMLRVKTLYKLPGGGLRLRSYNIDEWPDERYEGEAIKQIKIIGKVFWYS 227


>gi|260844262|ref|YP_003222040.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009]
 gi|257759409|dbj|BAI30906.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 10/204 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I  M +    T + LARK G+   S              +P ++ +  +   +     
Sbjct: 9   NRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKT-----FPRSDKLAHLSEISGYPQS 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN---TVGVPEIRSP 126
             L    S   ++++K +              F    G    G+  +   ++ +    + 
Sbjct: 64  WFLGEDSSPTFSSQEKHQTRTDSVVFNVLDVEFSCGDGTHVRGDLIDVVRSIELDPEYAR 123

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                           +  SM P    GD+L L+  +    GD +      G+   K L 
Sbjct: 124 RLVGNRAFKNIEIGNARGDSMAPTISPGDLLFLDKTVTYFDGDGIYAFCFDGECYVKRLQ 183

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS 210
              G  I ++S N  Y   ++E  
Sbjct: 184 KI-GSKIMVLSDNPNYQPWSIEKE 206


>gi|188492663|ref|ZP_02999933.1| regulatory protein [Escherichia coli 53638]
 gi|188487862|gb|EDU62965.1| regulatory protein [Escherichia coli 53638]
 gi|315615351|gb|EFU95983.1| helix-turn-helix family protein [Escherichia coli 3431]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 10/204 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I  M +    T + LARK G+   S              +P ++ +  +   +     
Sbjct: 9   NRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKT-----FPRSDKLAHLSEISGYPQS 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN---TVGVPEIRSP 126
             L    S   ++++K +              F    G    G+  +   ++ +    + 
Sbjct: 64  WFLGEDSSPTFSSQEKHQTRTDSVVFNVLDVEFSCGDGTHVRGDLIDVVRSIELDPEYAR 123

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                           +  SM P    GD+L L+  +    GD +      G+   K L 
Sbjct: 124 RLVGNRAFKNIEIGNARGDSMAPTISPGDLLFLDKTVTYFDGDGIYAFCFDGECYVKRLQ 183

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS 210
              G  I ++S N  Y   ++E  
Sbjct: 184 KI-GSKIMVLSDNPNYQPWSIEKE 206


>gi|59800917|ref|YP_207629.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae FA 1090]
 gi|254493392|ref|ZP_05106563.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|268594521|ref|ZP_06128688.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268598656|ref|ZP_06132823.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601679|ref|ZP_06135846.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603328|ref|ZP_06137495.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681808|ref|ZP_06148670.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684029|ref|ZP_06150891.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291044180|ref|ZP_06569892.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398777|ref|ZP_06642945.1| lambda repressor protein cI [Neisseria gonorrhoeae F62]
 gi|59717812|gb|AAW89217.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae FA 1090]
 gi|226512432|gb|EEH61777.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|268547910|gb|EEZ43328.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268582787|gb|EEZ47463.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585810|gb|EEZ50486.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268587459|gb|EEZ52135.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622092|gb|EEZ54492.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624313|gb|EEZ56713.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291011897|gb|EFE03890.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610779|gb|EFF39886.1| lambda repressor protein cI [Neisseria gonorrhoeae F62]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 11/220 (5%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             FS +++ +AI    +R N++   +A   G+   S +   + G   +        + K+
Sbjct: 18  KMFSGEQLGQAISEAIKRKNVSQKEVADHFGVKQPSVSGWIKNGRIDKKH------LDKL 71

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +   ++ +        +       ++  I         + G             + V V 
Sbjct: 72  IDYFSDVVTPSHFGIETFRVLKSNEQSSIRFPRLNAEATCGAGTINDHYIE-VVDYVTVA 130

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              +       +         +  SM P    GD++ +++A++   GD L +      + 
Sbjct: 131 AAWAREKLGGNLNK-IQVITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLK 189

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218
           AK L S  G  + ++S N  Y  +TV   D   +  I RI
Sbjct: 190 AKRLQSTVGGGLMIISDNSSYRTETVRGEDLNAVRIIGRI 229


>gi|85058915|ref|YP_454617.1| hypothetical protein SG0937 [Sodalis glossinidius str. 'morsitans']
 gi|84779435|dbj|BAE74212.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
          Length = 236

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 28/238 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I E +  +  +  L     A K  + P + +   +          S ES  K+     
Sbjct: 2   NNITERLKHVMAQEGLNQRAFAEKLNVSPQTLHNWLKRNA------ISRESAQKLSTLFG 55

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGN 113
            ++  LL+   +    +    +  P   +   GS               F+       G 
Sbjct: 56  YSLDWLLNGKGATKAASNNNSEVPPEDEWGRIGSWDRKTPLNNDEVEIPFYKDIELAAGG 115

Query: 114 K-WNTVG-------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
             +  V          +      G  +         T   SM P    G  + ++   + 
Sbjct: 116 GCFENVDYNSFLLRFSKSTLRRVGADSSGHGVICFTTHGNSMEPFIPDGTCVAIDCNNKH 175

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
                +      G    K L  R    I + S N   YP +  +  +++ I R+ W S
Sbjct: 176 VHDGDVYAININGLKRIKQLYMRPKGKIVVRSFNRLEYPDEEFDEQEVDIIGRLFWTS 233


>gi|261381037|ref|ZP_05985610.1| transcriptional regulator, Cro/CI family [Neisseria subflava
           NJ9703]
 gi|284796072|gb|EFC51419.1| transcriptional regulator, Cro/CI family [Neisseria subflava
           NJ9703]
          Length = 228

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 73/226 (32%), Gaps = 14/226 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +        L+ +GL++  G+   S    +    +   R  +  SI K L  +  
Sbjct: 3   EIKDRLREARRNKGLSQAGLSKLLGVSQASIAAIEAGRNK---RPTNLVSIAKALDVSPY 59

Query: 68  T---ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVG---- 119
                 +  ++  +     + +E +              +       GN + + +     
Sbjct: 60  WLETGKEDKEIISNATPLGKIEEWDNDTPLSEDDCEAPLYKDVKLSAGNGFADDIEDYNG 119

Query: 120 --VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
             +   R+                    SM P++  G  L +++  +     ++      
Sbjct: 120 YKLRFSRNTLRKHGISPENVVCVMADGDSMEPVFPSGATLGIDTGSKNIRDGQIYAINHG 179

Query: 178 GDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222
           G +  K+L       + + S N   YP +   + D+  I R+ W S
Sbjct: 180 GLLRTKILHKLPENKVRIRSYNQSEYPDEEASLDDLSVIGRVFWWS 225


>gi|315266122|gb|ADT92975.1| putative phage repressor [Shewanella baltica OS678]
          Length = 240

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + + I    +   +T   L    G+   +  + ++         P   ++F +  +  
Sbjct: 11  KTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDET-----APKGANLFALAKSLK 65

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKW-NTVG 119
             +  LL+   +    +  +      L+              F+       G      V 
Sbjct: 66  CDLSWLLNGQVAVKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGITEGVE 125

Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                +   +S               K    SM P+   G  + ++++       ++   
Sbjct: 126 YKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMYAI 185

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD---IEWIARILWAS 222
              G +  K+L    G  + L S N   YP + ++      I+ I ++ W S
Sbjct: 186 NHDGMMRVKMLYKLPGGGLRLRSYNLDEYPDEHLDTEKLKHIKIIGKVFWYS 237


>gi|304409163|ref|ZP_07390784.1| putative phage repressor [Shewanella baltica OS183]
 gi|307303166|ref|ZP_07582921.1| putative phage repressor [Shewanella baltica BA175]
 gi|304352984|gb|EFM17381.1| putative phage repressor [Shewanella baltica OS183]
 gi|306913526|gb|EFN43948.1| putative phage repressor [Shewanella baltica BA175]
          Length = 233

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E      +  NLT   L++K G+   + ++ +          P  E+++K+  A  
Sbjct: 2   KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDT-----SPKGENLYKLAQALQ 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--------SGGFFDSGVFPTGNKW-NT 117
            +   L+     + +  E   +         +            F+       G      
Sbjct: 57  CSPDWLMFGDSKNTKKPESNAEWAGGFDLWDNDSPLGDDEVEIPFYVDIELSAGEGIVEG 116

Query: 118 VG-----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           V      +   +S               K    SM P+   G  + ++++       ++ 
Sbjct: 117 VEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIVDGKMY 176

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222
                G +  K+L    G  + L S N   +P + +       I+ I ++ W S
Sbjct: 177 AINHDGIMRVKMLYKLPGGGLRLRSYNTDEWPDEHINNEQLKNIKVIGKVFWYS 230


>gi|194098221|ref|YP_002001276.1| Putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae NCCP11945]
 gi|193933511|gb|ACF29335.1| Putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae NCCP11945]
 gi|317163946|gb|ADV07487.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 220

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 11/219 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FS +++ +AI    +R N++   +A   G+   S +   + G   +        + K++
Sbjct: 1   MFSGEQLGQAISEAIKRKNVSQKEVADHFGVKQPSVSGWIKNGRIDKKH------LDKLI 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              ++ +        +       ++  I         + G             + V V  
Sbjct: 55  DYFSDVVTPSHFGIETFRVLKSNEQSSIRFPRLNAEATCGAGTINDHYIE-VVDYVTVAA 113

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             +       +         +  SM P    GD++ +++A++   GD L +      + A
Sbjct: 114 AWAREKLGGNLNK-IQVITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLKA 172

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218
           K L S  G  + ++S N  Y  +TV   D   +  I RI
Sbjct: 173 KRLQSTVGGGLMIISDNSSYRTETVRGEDLNAVRIIGRI 211


>gi|152985545|ref|YP_001349953.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960703|gb|ABR82728.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 237

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I    +  NL+   LA+  G+  TS +  +R           T  + +I  A   
Sbjct: 2   ELKDRIKAARKHANLSQVQLAQAVGMTQTSISDLERGKSRA------TSFVAQIAGACGV 55

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNK 114
               L +          +        +     S               F+       G  
Sbjct: 56  NPLWLAEGRGEMLAERGQANAGPNASWLGAVESWDDETPLDADEIELPFYKEIELSGGKG 115

Query: 115 WNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +     R    G Y +                  SM P+   G  + ++++ +    
Sbjct: 116 STVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIRD 175

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222
             +      G +  K+L    G  + + S N   +P +  E  +    I  I R+ W S
Sbjct: 176 GDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEAAEHINVIGRVFWYS 234


>gi|49081996|gb|AAT50398.1| PA0906 [synthetic construct]
          Length = 238

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I    +  +L+   LA+  G+  TS +  +R           T  + +I  A   
Sbjct: 2   ELKDRIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSRA------TSFVAQIAGACGV 55

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNK 114
               L +          +        +     S               F+       G  
Sbjct: 56  NPLWLAEGRGEMLAERGQANAGPNASWLGAVESWDDETPLDADEIELPFYKEIELSGGKG 115

Query: 115 WNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +     R    G Y +                  SM P+   G  + ++++ +    
Sbjct: 116 STVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKD 175

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222
             +      G +  K+L    G  + + S N   +P +  E  +    I  I R+ W S
Sbjct: 176 GDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEAAEHINVIGRVFWYS 234


>gi|15596103|ref|NP_249597.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100364|ref|ZP_01364282.1| hypothetical protein PaerPA_01001389 [Pseudomonas aeruginosa PACS2]
 gi|116048830|ref|YP_792370.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893125|ref|YP_002441994.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254239258|ref|ZP_04932581.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719]
 gi|296390740|ref|ZP_06880215.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313105790|ref|ZP_07792053.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9946808|gb|AAG04295.1|AE004525_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584051|gb|ABJ10066.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171189|gb|EAZ56700.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719]
 gi|218773353|emb|CAW29165.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310878555|gb|EFQ37149.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 237

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I    +  +L+   LA+  G+  TS +  +R           T  + +I  A   
Sbjct: 2   ELKDRIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSRA------TSFVAQIAGACGV 55

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNK 114
               L +          +        +     S               F+       G  
Sbjct: 56  NPLWLAEGRGEMLAERGQANAGPNASWLGAVESWDDETPLDADEIELPFYKEIELSGGKG 115

Query: 115 WNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +     R    G Y +                  SM P+   G  + ++++ +    
Sbjct: 116 STVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKD 175

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222
             +      G +  K+L    G  + + S N   +P +  E  +    I  I R+ W S
Sbjct: 176 GDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEAAEHINVIGRVFWYS 234


>gi|149186070|ref|ZP_01864384.1| putative transcriptional regulator, repressor [Erythrobacter sp.
           SD-21]
 gi|148830101|gb|EDL48538.1| putative transcriptional regulator, repressor [Erythrobacter sp.
           SD-21]
          Length = 212

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 13/220 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S ++    +  + E+   + + L+   G +P+   +  R   +G  R        +
Sbjct: 1   MADMSPER--ARLVELTEKSRTSLASLSSILGRNPSYLQQFVR---KGSPRKLEEADRRR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +         +L   P        +    +P L    S   G F +        +++   
Sbjct: 56  LAEFFGVDEVELGADPARPTPRESEDFVAVPRLALDASAGPGSFSAEEIS----FDSFRF 111

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                   G+       +  + +  SM P  R GD + ++       G+ + +      +
Sbjct: 112 SRRWLREMGL--DGADLSAIRVEGDSMEPTLRSGDEIFVDRNK--RVGEGVHVVRIGDTL 167

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
             K + +     I L+S N  Y    +   ++E I R++W
Sbjct: 168 HVKQVQASAPGRIALISANEAYAPIELARDEVEIIGRVVW 207


>gi|85709159|ref|ZP_01040225.1| transcriptional regulator [Erythrobacter sp. NAP1]
 gi|85690693|gb|EAQ30696.1| transcriptional regulator [Erythrobacter sp. NAP1]
          Length = 227

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 71/214 (33%), Gaps = 5/214 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +A+    + + L+   G + +   +  + G   +      + + +    +   + 
Sbjct: 14  QRLLDLAQERGASLASLSVLIGRNASYLQQFIKKGSPRKLEEGDRKVLAQFFGISEIELG 73

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFP-TGNKWNTVGVPEIRSPHN 128
               +      TT     +          + G     G  P     ++T           
Sbjct: 74  GTESVAQEISYTTGSGSADSTQWVVVQRLAIGASAGPGALPTEEAAFDTFRFSRRWLAEQ 133

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           G+     + +    +  SM PL   GD ++++   +    D + +      ++ K +   
Sbjct: 134 GL--SNAKLSAITVEGDSMEPLLNDGDEILIDRTERAFR-DGVHVVRLGETLMVKRVARA 190

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
                 L+S N  YP   V   ++E I R++W S
Sbjct: 191 GAGRFALLSQNLAYPPVEVAADELEIIGRVVWKS 224


>gi|327197613|ref|YP_004301304.1| gp28 [Brochothrix phage NF5]
 gi|296245436|gb|ADH03050.1| gp28 [Brochothrix phage NF5]
          Length = 232

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 22/236 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  +K I   I +  + +N+T   LA K G+ P++ +             PS   I K
Sbjct: 1   MDTNRNKIISSNIKKYIKENNITQKELANKVGISPSTMSDYMNLRSN-----PSHGVIQK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---- 116
           I          +          +    +                           +    
Sbjct: 56  IADYFGILKSDIDTTYKEPNGISNIYSQLNEERQTKVYNYASRQLEEQNSNVTSIDKKKV 115

Query: 117 -----TVGVPEIRSPHNGIY-------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                T   P   S  + +Y         +  D     Q  SM PL   G I+      +
Sbjct: 116 YVLGKTAANPTEVSYGDAVYDETIDTNVPRNADCALVIQGDSMEPLLHDGSIVFYKQQCE 175

Query: 165 VNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           V  G+  ++      +  K +        + L SLN  Y    +    +  I +++
Sbjct: 176 VENGEIAILDIDGNGVTCKKVYFNYDDNIVILKSLNSKYDDRELSPERVRVIGKVV 231


>gi|282599559|ref|ZP_05970999.2| transcriptional regulator, Cro/CI family [Providencia rustigianii
           DSM 4541]
 gi|282568492|gb|EFB74027.1| transcriptional regulator, Cro/CI family [Providencia rustigianii
           DSM 4541]
          Length = 233

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 67/226 (29%), Gaps = 15/226 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +     +  ++ + LA K G+   S  K +        R      I K +  + + 
Sbjct: 8   IAKRLLDARIKAGMSQADLAEKVGVSQQSIQKIEAGQTNSPRR---ISDIAKAVNVSAQW 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-------NTVGVP 121
           +              E KE E                      G               P
Sbjct: 65  LQFGTRDGNGLKTEFEVKEWEDIPNCSDVDFVDIPVLDIELAAGGGSNAEIIESEEYTYP 124

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             R          +     K    S+ P+   GD++ ++ + +      L        + 
Sbjct: 125 FRRDELRKYGVSASNARIVKIIGNSLYPVLNSGDLVAVDVSKRDIKDGDLYAIRDGVLLR 184

Query: 182 AKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222
            K+L+ R    I + S N   YP + +  ++    +  I R+ W+S
Sbjct: 185 VKILVYRPDGGIIIRSFNKDEYPDEQLPRNEAAARVHVIGRVFWSS 230


>gi|238923636|ref|YP_002937152.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale
           ATCC 33656]
 gi|238875311|gb|ACR75018.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale
           ATCC 33656]
          Length = 213

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 67/225 (29%), Gaps = 24/225 (10%)

Query: 1   MTSFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M     K I+ E ++    +   T   +A+  G+ P +FN   +       R    +++ 
Sbjct: 1   MVKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAI--PRMGKVQALA 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                    + +                K++ +   P          G    G     V 
Sbjct: 59  DYFNINKSDLIED---------------KKLNIDTVPIESGYTIPVLGRVAAGYGKEAVE 103

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
               +   +   A +        +  SM+P    GD +I+        GD ++      D
Sbjct: 104 EVIGQIEISPSMAAKGDYFGLLIKGDSMIPTLYDGDTVIVERTDDAESGDLVIALVNGSD 163

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219
              K L       I L+  N  Y       S+     ++ + +++
Sbjct: 164 ATCKRLQKY-AEGIALIPQNPVYEPMRFTESEIDTTPVKILGKVV 207


>gi|268595110|ref|ZP_06129277.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268548499|gb|EEZ43917.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
          Length = 229

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 66/231 (28%), Gaps = 28/231 (12%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA---------- 63
               +  NL+   LA+ A +  ++    +    +      +   + KIL           
Sbjct: 2   KEARKNKNLSQENLAKLAEVSQSTIAALESGRNKKAT---NIAKLAKILDVSAFWLETGE 58

Query: 64  -----------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                           +  +              +  + + Y   S   G   +   P  
Sbjct: 59  GSRNTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 118

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           N +    +P  +S                    SM     +   + +++        ++ 
Sbjct: 119 NGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 175

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
              + G    K LI + G S+ + S N   YP +T  +  +  I R+ W S
Sbjct: 176 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETASLDSLTVIGRVFWRS 226


>gi|331685806|ref|ZP_08386387.1| transcriptional regulator, Cro/CI family [Escherichia coli H299]
 gi|324014328|gb|EGB83547.1| helix-turn-helix protein [Escherichia coli MS 60-1]
 gi|331077003|gb|EGI48220.1| transcriptional regulator, Cro/CI family [Escherichia coli H299]
          Length = 228

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 16/228 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +    E+  ++ + LA K GL   S  K +    + + R    + I K+L  + 
Sbjct: 2   KTLAERLKSEREKAGMSQAQLAEKIGLSQQSVAKIENGETQ-QPR--KIKEIAKVLGVSQ 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-----VP 121
           + +   ++   S      K+ +   L     +             G     V       P
Sbjct: 59  KWLQLGIEDNASFPDLVVKEAESTALDPDIFANIPVLDVELSAGNGCLAEIVESTVDWFP 118

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179
             R          +     K    S+LP+   GD + ++    + +  GD L        
Sbjct: 119 LRRIDLRKAGVCVSNAKIVKIWGNSLLPVLNNGDFVAVDVSQTVPIRDGD-LYAIRDGVL 177

Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222
           +  K+LI+     + L S N   YP + +   D    I  I R+ W+S
Sbjct: 178 LRVKILINLPDGGLILRSFNKDEYPDEILTFEDRRSRIHVIGRVFWSS 225


>gi|330999680|ref|ZP_08323389.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
           11859]
 gi|329574186|gb|EGG55762.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
           11859]
          Length = 226

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 8/218 (3%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S K   + ++        +P+ +++  G+ P    K      +G    P  + +F + + 
Sbjct: 6   SQKTWTDRLNEALALRGKSPADISKATGITPAGIKKWI----DGDVSKPKFDDVFAVCSF 61

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
            + T   L+    S    T      + +      GS G              T+ V    
Sbjct: 62  LDITTEWLMKGIGSINDKTMPAANMVSIQQVDFYGSCGVGVMNFEDYPE-IKTLQVTPAW 120

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
              N  +              SM P  R GD + ++   +    D + +    G+   K 
Sbjct: 121 FSRNFAFYNPRDVKIITALGDSMEPEIRDGDAVFIDITDKETLRDGIYLLVVDGEAYIKR 180

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219
           +    G+ I L+S N  Y    + +    ++  I R++
Sbjct: 181 VQKLIGKKIALLSTNKAYKDIEISLDSDIEVRIIGRVI 218


>gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176]
 gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176]
          Length = 209

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 65/213 (30%), Gaps = 17/213 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +    +    + + ++R  G+   +  K +          P  +++ ++         
Sbjct: 4   DRLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRST-----PDPQTVARLAEIL----- 53

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                        +   +   +  +  S         V      +  +   E        
Sbjct: 54  --DTTADVLLGLQKSPSEAPAVGRYAFSRYAECLIPVVGTVRAGYGALAFEEDYGKEYAS 111

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRR 189
                       +  SM P    GD+ +++    ++ GD  +L+    G+   K  I +R
Sbjct: 112 VKDPQNYFYLVVKGDSMEPRISDGDLALVHRQNTLDNGDLGVLVYGADGEGTLKKYI-QR 170

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
           G S+ L   N  Y    ++  +++      +++
Sbjct: 171 GNSVVLHPFNPAYEELVIKGEELDHLYIAGKVV 203


>gi|296282441|ref|ZP_06860439.1| putative transcriptional regulator, repressor [Citromicrobium
           bathyomarinum JL354]
          Length = 231

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 5/214 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-I 69
             +  +A+    + + L++    + +   +  R G   +       ++ +         +
Sbjct: 18  ARLLELAQARGSSLAALSKLIDRNSSYLQQFIRKGSPRKLEEQDRRTLAQFFGVDESELV 77

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPHN 128
            ++          +     +      P          G F  G   ++  G        N
Sbjct: 78  PEMSGAEEKSYGASRFSAGDEDFHAIPRLSLAAAAGPGQFANGEAPFDNFGFSGRWLREN 137

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           G        +    +  SM PL R GD ++++   +    D + +      ++ K L S 
Sbjct: 138 GF--DPKMLSALTVEGDSMEPLLRHGDEILIDRGSRFER-DGVHVVRMGDTLMVKRLASA 194

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
               I L+S N  YP   V + +IE + R++W S
Sbjct: 195 GAGRIALLSQNLAYPPVEVGLDEIEVLGRVVWKS 228


>gi|161525013|ref|YP_001580025.1| putative phage repressor [Burkholderia multivorans ATCC 17616]
 gi|160342442|gb|ABX15528.1| putative phage repressor [Burkholderia multivorans ATCC 17616]
          Length = 270

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 21/235 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-----------TES 57
           + + +    E  +L+ + LA +AG+  T+    +    +G     S            ES
Sbjct: 28  LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGSKHLLSIARALGVNPAWLES 87

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                 A+     Q       + +      +    L    +          F  G     
Sbjct: 88  ESGPKDASAAAAPQPGIYKIPEDQGNVLVWEHPDDLPPDENRVWLDRYDYRFSAGTGLIQ 147

Query: 118 VG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
                   +P        + +        +    SM P     D++++++A       ++
Sbjct: 148 WEVRQKKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTAKNHIRDGKV 207

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEM---SDIEWIARILWAS 222
                 G+ + K +  + G SI L S+N   YP   V       +  +  +++ S
Sbjct: 208 YAIYFEGEPLVKQIFKQAGGSICLHSINAGKYPDKIVTPELMESVTIMGEVIYRS 262


>gi|146308997|ref|YP_001189462.1| putative phage repressor [Pseudomonas mendocina ymp]
 gi|145577198|gb|ABP86730.1| putative phage repressor [Pseudomonas mendocina ymp]
          Length = 240

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 16/224 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + + + R+ +   ++   LA + G      ++S+    E   R PS   +  I  A  
Sbjct: 2   ETLGQRLKRLRKAKGMSQQALAEECGWA----SQSRIGNYEADLRAPSLSDLLLIAPALG 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-----------W 115
            ++ +L       G    + + +   +            +                   +
Sbjct: 58  VSLAELAGSDEWTGAYGVQVQVKNHQVRESVGAETIEAGTAKEGAVPVVGNAKLGTDGYF 117

Query: 116 NTVGVPEIR-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
             V  P      +  I++        K    SM P  + G+ +++        GD +++K
Sbjct: 118 EAVDFPVGHGDGYLLIHSDDPNAYGLKVLGDSMHPRIKNGEYVLIEPNKVFTSGDEVMVK 177

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            + G  + K  I  R       S+N  +    +    I+ I  +
Sbjct: 178 TKDGQAMIKEFIYLRDGMYRFDSVNQSHQPIHLPEDAIDKIHLV 221


>gi|251772691|gb|EES53255.1| putative phage repressor [Leptospirillum ferrodiazotrophum]
          Length = 227

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 9/221 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA---T 65
           + + +     +  L+ + L+ K+G+   + +  +    +             I      T
Sbjct: 4   LGDRLKEARTKRKLSQTALSEKSGVPQQTIHAIENKKAKSTGHLFPLAKALHINPEWLST 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            E   +   L  S            P      + + G        +      V       
Sbjct: 64  GEGEMERKPLEESFLGEPASPGYGAPFSIPVFAITAGMGRGRFLDSEQVLKIVVFDPATL 123

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               +               SMLP      I+ ++   +    D + +      I  K L
Sbjct: 124 RDMNLSGSVHGIVAVYADGESMLPTIPPKSIVFVDRNQRDLR-DGVYLVRLEEMIYVKRL 182

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARI--LWA 221
                  + ++S N  Y    V++    D E + ++  +W 
Sbjct: 183 QRLPNHKVKVISDNPVYQPFEVDLKNGDDFEILGKVLRVWI 223


>gi|170080892|ref|YP_001730212.1| repressor protein CI [Escherichia coli str. K-12 substr. DH10B]
 gi|133351|sp|P14819|RPC1_BPPH8 RecName: Full=Repressor protein CI
 gi|14804|emb|CAA31471.1| unnamed protein product [Enterobacteria phage phi80]
 gi|169888727|gb|ACB02434.1| repressor protein CI [Escherichia coli str. K-12 substr. DH10B]
          Length = 236

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 25/233 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  +  R  L    LA      P + N   +          S E+  +I      +
Sbjct: 4   ISERIKFLLAREGLKQRDLAEALSTSPQTVNNWIKRDA------LSREAAQQISEKFGYS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-----------GSGGFFDSGVFPTGNKWNT 117
           +  LL+   S  +  E             +               F     F  G+    
Sbjct: 58  LDWLLNGEGSPKKDLESNIPPESEWGTVDAWDKNTPLPDDEVEVPFLKDIEFACGDGRVH 117

Query: 118 VG--------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                       +      G  +  +          SM P+   G  + +++  +     
Sbjct: 118 DEDHNGFKLRFSKATLRRVGANSDGSGVLCFPASGDSMEPVIPDGATVAVDTGNKRVIDG 177

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
            L    +      K L  + G  I + S+N  Y  +  + +D+E I  + W S
Sbjct: 178 ELYAINQGDLKRIKQLYRKPGGKILIRSINRDYDDEEADEADVEIIGFVFWYS 230


>gi|224825138|ref|ZP_03698244.1| putative phage repressor [Lutiella nitroferrum 2002]
 gi|224602809|gb|EEG08986.1| putative phage repressor [Lutiella nitroferrum 2002]
          Length = 227

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 20/226 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +     ++   L+ K G+   S             R PS +++ KI+A+    
Sbjct: 3   VSARLGHVIAEKGMSIKALSEKTGIPYRSLQNYFSGE-----REPSFDNLRKIVASLGVD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS---GVFPTGNK---WNTVGVPE 122
               L    +       +     +   P   S   F          GN     +   +  
Sbjct: 58  ANWFLFGENAQTGVFAAEVGVSDVKGHPVDLSEYVFIPRYRVQASAGNGRVLSDEDYMHS 117

Query: 123 IRSPH----NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +        N ++A          +  SM P  +  D+++L+++ +    + + +     
Sbjct: 118 MAFRRYWVSNYLHAEPANLAIISVEGDSMEPTLKDHDVIMLDTSRRDPNVEGIYVLRLDD 177

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVE----MSDIEWIARILW 220
            ++ K +       I + S N  YP   V+      D+  I +++W
Sbjct: 178 ALLVKQVQRIP-GKIRVSSANPAYPPFDVDLSNPAEDVAIIGKVVW 222


>gi|319789030|ref|YP_004150663.1| transcriptional regulator, XRE family [Thermovibrio ammonificans
           HB-1]
 gi|317113532|gb|ADU96022.1| transcriptional regulator, XRE family [Thermovibrio ammonificans
           HB-1]
          Length = 222

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 9/212 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + ++ E   L+ S +A++ G+   ++ + ++ G +   R     ++ +I A  N  
Sbjct: 3   VNERLRKLREHLGLSQSKMAKELGVSLKTYQRYEQVGYDIPER-----ALRQIEATFNVN 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L        R   + +      +              F  G     +  P+      
Sbjct: 58  PEWLRQGKGEMFRPKTEAQIIATPEFVVKPIPLIAEGEAGF--GQFIPNLVEPDKVVWFP 115

Query: 129 GIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              ++   +    K    SM P   +GDI++++    V  GD +    + G +V K    
Sbjct: 116 VPTSLANHRLFFIKVVGNSMEPRIFEGDIVLVDKDATVGKGDLVAALLKDGTLVVKRYWK 175

Query: 188 RRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             G  ++ L S+N  YP   V   ++  IA +
Sbjct: 176 NNGDGTVVLESINPSYPPIVVRPKELRDIALV 207


>gi|197105225|ref|YP_002130602.1| SOS-response transcriptional repressor, LexA [Phenylobacterium
           zucineum HLK1]
 gi|229621740|sp|B4RBX6|LEXA_PHEZH RecName: Full=LexA repressor
 gi|196478645|gb|ACG78173.1| SOS-response transcriptional repressor, LexA [Phenylobacterium
           zucineum HLK1]
          Length = 229

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 5/223 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   ++PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHRLITALEERGFLRRLPHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNT 117
            + L             P       + +  E        +         G    G     
Sbjct: 61  ARALEVVRLPQQATAAAPPKGRAPFKPQLVEAGQAMPVAANDTRELPILGKIAAGTPIEA 120

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           +     R P         +    + Q  SM+      GD +++      N GD ++    
Sbjct: 121 IQQERDRLPVPEAMLGAGEHFVLEIQGDSMINAGILDGDFVVIRRTDSANSGDIVVALVD 180

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K L  +   SI L + N  Y         +    R++
Sbjct: 181 GEEATLKRLRKKGA-SIALEAANPAYETRIFGPDRVAVQGRLV 222


>gi|156523050|ref|YP_950425.2| putative c repressor [Pseudomonas phage DMS3]
 gi|156513709|gb|ABG66655.2| putative c repressor [Pseudomonas phage DMS3]
          Length = 236

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 79/215 (36%), Gaps = 12/215 (5%)

Query: 11  EAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I+R+     +  + S LAR AG+      +  + G       P+   +  +  A   +
Sbjct: 23  AFIERLRSIVAIAGSASALARNAGISQGGLQRYLKGG------EPTRRVLISLAKAAGVS 76

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+    S     ++       +Y P   +      G +  G    T  +   R   +
Sbjct: 77  LGWLMTGEGSQKPEEQEATGSDQYVYVPLYDARVSAGHGSWSEGAHVLT-QLAFTRYSLS 135

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 T+ +  +    SM PL   GD ++++  ++    + + +      + AK L  +
Sbjct: 136 KKGLEPTRMSAVRVGGDSMEPLLSDGDAVVIDHDLRTVRDEAIYVIRVGDQLYAKRLQRQ 195

Query: 189 RGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
              SI ++S N  Y    V      D++ I R++W
Sbjct: 196 FDGSIAIISENKAYKDMVVPKDQLSDLDIIGRVVW 230


>gi|85374557|ref|YP_458619.1| putative transcriptional regulator, repressor [Erythrobacter
           litoralis HTCC2594]
 gi|84787640|gb|ABC63822.1| putative transcriptional regulator, repressor [Erythrobacter
           litoralis HTCC2594]
          Length = 220

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 69/212 (32%), Gaps = 7/212 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  +A+   +  S L+   G + +   +  R    G  +         +         +
Sbjct: 12  RLLELAQEKGVGLSKLSALIGRNSSYLQQFVRR---GSPKKLEEGDRRLLAEFFGVDESE 68

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHNGI 130
           L          +     +   +  P          G F    + ++  G        +G 
Sbjct: 69  LGANKEKSYNASPSLLADEDFVAIPRLSIAVAAGPGQFAGDESPFDNFGFSGRWLRDHGF 128

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                  +    +  SM PL R GD ++++ +         +++     ++ K L     
Sbjct: 129 --DPKMLSSVTVEGDSMEPLLRDGDEILVDRSPGPLRDGIHVVR-LGETLMVKRLSRSGQ 185

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             I L+S N  YP   + + D+E I R++W S
Sbjct: 186 GRISLLSQNLAYPPLDMALEDVEVIGRVVWKS 217


>gi|253582988|ref|ZP_04860206.1| peptidase [Fusobacterium varium ATCC 27725]
 gi|251835194|gb|EES63737.1| peptidase [Fusobacterium varium ATCC 27725]
          Length = 229

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 15/220 (6%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    E    + + LA+  G+  + +N  +R  +         + +  IL  T +   +
Sbjct: 6   FLRNRREEMGYSQNKLAKAIGITQSYYNTIERGEVRNPPSEEILDKMIAILQLTTKEAAE 65

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----------GVFPTGNKWNTVGV 120
              L   +   T   E+   L     +                        G    T   
Sbjct: 66  FKYLAAIERTPTLILEELKKLEKQKDATPKVNVSELKDLDNYIPLYSRISAGIGVFTEEA 125

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P       G+  ++        +  SM P  +   I++    ++V  G+         + 
Sbjct: 126 PVDFISIPGVRNVE-TLFAVNVKGDSMEPTIKNSSIILCRKGVEVRNGEIGAFIVN-EES 183

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
             K L    G  I L+S N  Y    +    +   + ++L
Sbjct: 184 YVKRL-KVTGNYIALISDNPNYQPIYIGPGEEFSVVGKVL 222


>gi|160873890|ref|YP_001553206.1| putative phage repressor [Shewanella baltica OS195]
 gi|160859412|gb|ABX47946.1| putative phage repressor [Shewanella baltica OS195]
          Length = 240

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 70/232 (30%), Gaps = 21/232 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + + I    +   +T   L    G+   +  + ++         P   ++F +  +  
Sbjct: 11  KTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDET-----APKGANLFALAKSLK 65

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKW-NTVG 119
             +  LL+   +    +  +      L+              F+       G      V 
Sbjct: 66  CDLSWLLNGQVAAKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGIAEGVE 125

Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                +   +S               K    SM P+   G  + ++++       ++   
Sbjct: 126 YKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIIDGKMYAI 185

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD---IEWIARILWAS 222
              G +  K+L    G  + L S N   +P + +       I+ I ++ W S
Sbjct: 186 NHDGMMRVKMLYKLPGGGLRLRSYNLDEWPDEHISHEQLKHIKIIGKVFWYS 237


>gi|189350245|ref|YP_001945873.1| putative bacteriophage repressor protein CI [Burkholderia
           multivorans ATCC 17616]
 gi|189334267|dbj|BAG43337.1| putative bacteriophage repressor protein CI [Burkholderia
           multivorans ATCC 17616]
          Length = 246

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 21/235 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-----------TES 57
           + + +    E  +L+ + LA +AG+  T+    +    +G     S            ES
Sbjct: 4   LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGSKHLLSIARALGVNPAWLES 63

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                 A+     Q       + +      +    L    +          F  G     
Sbjct: 64  ESGPKDASAAAAPQPGIYKIPEDQGNVLVWEHPDDLPPDENRVWLDRYDYRFSAGTGLIQ 123

Query: 118 VG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
                   +P        + +        +    SM P     D++++++A       ++
Sbjct: 124 WEVRQKKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTAKNHIRDGKV 183

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEM---SDIEWIARILWAS 222
                 G+ + K +  + G SI L S+N   YP   V       +  +  +++ S
Sbjct: 184 YAIYFEGEPLVKQIFKQAGGSICLHSINAGKYPDKIVTPELMESVTIMGEVIYRS 238


>gi|77164141|ref|YP_342666.1| peptidase S24, S26A and S26B [Nitrosococcus oceani ATCC 19707]
 gi|254435083|ref|ZP_05048590.1| Peptidase S24-like domain protein [Nitrosococcus oceani AFC27]
 gi|76882455|gb|ABA57136.1| phage repressor protein, Serine peptidase, MEROPS family S24
           [Nitrosococcus oceani ATCC 19707]
 gi|207088194|gb|EDZ65466.1| Peptidase S24-like domain protein [Nitrosococcus oceani AFC27]
          Length = 225

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 85/231 (36%), Gaps = 25/231 (10%)

Query: 1   MTSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTES 57
           MT   H +I    ++ +      + + LAR AG + +  ++ +      +G  R    E 
Sbjct: 1   MT-LKHNQIRLHNLEVLITEAG-SAAKLARMAGTNSSYLSQVRNQLPTKKGTPRSIGDEL 58

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVF 109
             K+  A  +    +  LP       E+             PL+ +  +G+         
Sbjct: 59  AGKLEKAMKKPQGWMDTLPADGTTPQEENNAHDGPDLRSLHPLISWVQAGNWYEVSESFV 118

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           P       +  P   SP         +    + + +SM P + + D++ ++  +  + G 
Sbjct: 119 PA-YGSELLPCPVRCSP---------ESFVLRVRGSSMEPKFHEDDLIFVDPNVSADHGK 168

Query: 170 RLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++++     +   K LI   G+   L +LN  +P   +E+ +   I  ++
Sbjct: 169 YVVVRLDESNEATFKQLIIEDGKQY-LKALNPDWPNRIIEVDEEATICGVI 218


>gi|83858367|ref|ZP_00951889.1| LexA repressor [Oceanicaulis alexandrii HTCC2633]
 gi|83853190|gb|EAP91042.1| LexA repressor [Oceanicaulis alexandrii HTCC2633]
          Length = 227

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 5/222 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I++      ++PS    K  L+  S +   R       R         
Sbjct: 1   MLTKKQHELLLYINKRLSEDGVSPSFDEMKEALNLASKSGVHRLVSALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L           + P          +    +     S        G    G     +
Sbjct: 61  ARALEVLKLPQGGSGNSPAPSKTNVVSADFGSSV-SDERSHGVEVPVLGRIAAGVPIEAI 119

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                R P         +    +    SM       GD++I+      N GD ++     
Sbjct: 120 QHETDRLPVPAEMISGGEHFALEVHGDSMIEAGILDGDLVIIKRGDTANTGDIVVALVHD 179

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K L  ++G SI L + N  Y       ++++   R++
Sbjct: 180 EEATLKKL-RKKGGSIALEAANPAYETRIFGPNEVKVQGRLV 220


>gi|260868456|ref|YP_003234858.1| putative phage repressor protein CI [Escherichia coli O111:H- str.
           11128]
 gi|257764812|dbj|BAI36307.1| putative phage repressor protein CI [Escherichia coli O111:H- str.
           11128]
          Length = 229

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 8/203 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I  M +    + + LARK G+   S             R      +  I         
Sbjct: 9   NRIAMMLKTKGWSQAELARKLGVSAQSVQYWTTGKT--FPRSDKLAQLSVISGYPQSWFL 66

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPH 127
                            ++  +              G    G+  +   ++ +    +  
Sbjct: 67  GEDASSTFSSAEKHHTREDSVVFNVLDVEFS--CGDGTHVRGDLIDVVRSIELDPEYARR 124

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                          +  SM P    GD+L L+  +    GD +      G+   K L  
Sbjct: 125 LVGNRAFKNIEIGNARGDSMAPTISPGDLLFLDKTVTYFDGDGIYAFCFDGECYVKRLQK 184

Query: 188 RRGRSIDLMSLNCCYPVDTVEMS 210
             G  I ++S N  Y   ++E  
Sbjct: 185 I-GSKIMVLSDNPNYQPWSIEKE 206


>gi|89054365|ref|YP_509816.1| LexA repressor [Jannaschia sp. CCS1]
 gi|122999507|sp|Q28R71|LEXA_JANSC RecName: Full=LexA repressor
 gi|88863914|gb|ABD54791.1| SOS-response transcriptional repressor, LexA [Jannaschia sp. CCS1]
          Length = 228

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 5/223 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +   + + E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQRDLLEFIHKRMQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + +                     ++       +    + +      G    G     +
Sbjct: 61  ARAIEIVKMPDAMTGGGFEPRVIDGDRGPAPANAMAVRAAPAREVPVMGQIAAGVPIEAI 120

Query: 119 GVPEIRSP-HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
                       +          + +  SM+      GDI+++      + GD ++    
Sbjct: 121 SQVASHVAVPEQMLGAGGNHYALEVKGDSMIDAGINDGDIVVIEEGNTADNGDIVVALVE 180

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K L  + G  I L + N  Y         ++   +++
Sbjct: 181 DHEATLKRLRRK-GGMIALEAANPAYETRVFRDDQVKVQGKLV 222


>gi|296136472|ref|YP_003643714.1| putative phage repressor [Thiomonas intermedia K12]
 gi|295796594|gb|ADG31384.1| putative phage repressor [Thiomonas intermedia K12]
          Length = 224

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 74/224 (33%), Gaps = 11/224 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + K++  AI+    +  ++   LAR   + P S       G   ++R     ++F+  
Sbjct: 1   MLTGKELGAAIEAARLKKGVSKVTLARAMEIKPPSVQDWIHHGRVAKSR---LGALFQYF 57

Query: 63  AATNETICQLLDLPFSDGRTTE--KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +         +   +    +         +P      +   G +       G       +
Sbjct: 58  SDVVGPEHWGVREEWGYNPSLRIVDGMVTLPQYDLKAAAGPGRYLEAQLRVGAVQVCQDI 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                 ++G+    T          SM P    GDI++++ +++    D + +     + 
Sbjct: 118 VARILRNSGV--ALTSLALVTVAGDSMEPTINDGDIVVIDRSVETIDRDGVYLFTFGDET 175

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
             K +     +S+ + S N  Y    +   +   +    R++WA
Sbjct: 176 FIKRIQRMP-KSLSVNSDNGLYKGWEISSEETSSLHVHGRVIWA 218


>gi|217975711|ref|YP_002360310.1| putative phage repressor [Shewanella baltica OS223]
 gi|217501061|gb|ACK48948.1| putative phage repressor [Shewanella baltica OS223]
          Length = 231

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 69/214 (32%), Gaps = 13/214 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + ++      +     R+ G+  ++ ++ +    + R ++     I KI+        
Sbjct: 25  RNLKQLRIDLGFSQEEFGRRIGVTKSTISQWEAGKSQARRKF-----IKKIIETF----- 74

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPHN 128
           +L D  F      E                  F+       G+ +         I     
Sbjct: 75  ELEDNYFDIVDREEANVDSCKSNCESSFKRIPFYSDVKVAAGSGYCNREEVYELILVKDL 134

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
              +   +         SM P  + G +++++    V    ++ +  +   +  K     
Sbjct: 135 PALSNYKKLFCITVTGDSMEPALKDGSLIVVDPTQTVVRDGKIYVFRQGDVLRVKAFSYE 194

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
           + + +   S N  Y  +   + ++E + R++++S
Sbjct: 195 K-QMVKAKSYNEFYKDELYRLDELELLGRVVFSS 227


>gi|329115279|ref|ZP_08244034.1| Phage Repressor [Acetobacter pomorum DM001]
 gi|326695722|gb|EGE47408.1| Phage Repressor [Acetobacter pomorum DM001]
          Length = 214

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 29/231 (12%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++IW A+D +A+   LTPSGLAR AGLD T+FN S+R    G  RWP+  S+ + L
Sbjct: 1   MIPAERIWHALDTLAQERGLTPSGLARAAGLDATTFNPSRRHTGHGVWRWPALPSLLRAL 60

Query: 63  AATNETICQLLDLPFSDGRTT---EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                ++ Q     +   +           +  L       GG  D    P G  W    
Sbjct: 61  DVLRVSLAQFEAHLWGYEQPDGAKTPAPCFMRSLPLSWLDQGGVLDRAGLPAGGLWEQEE 120

Query: 120 VPEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                      +++  +     +     M P+ R G  L++  A+     DR+++     
Sbjct: 121 T---------FFSLPSSSAYMLRVDTEGMEPILRLGCSLVVQPALHPRGADRVVLIRAGQ 171

Query: 179 DIVAKVLISRRGRSID------LMSLNCCYPVDTVEMSDI-EWIARILWAS 222
             V  +L  +  R+I       L           V  +    W+ RI+  S
Sbjct: 172 APVVGILQEKPVRAIQPFGRSALQP---------VPAAAAGVWLHRIVLIS 213


>gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185]
 gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185]
          Length = 263

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 20/236 (8%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
             + I + I    +   LT   +A    + P+S  + +      + +  +  ++ K L  
Sbjct: 23  QGEMIGDRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGK--NLINLSKALNC 80

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--------GFFDSGVFPTGNKWN 116
           + E +    +   +   T E   +           +          F+       GN   
Sbjct: 81  SPEWLLSGKEDNQARVSTVESNAEWHAGFDLWDGDTPLRDDEVALPFYREVELAAGNGST 140

Query: 117 TVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            V       +   +S                    SMLP+ + G  + ++++ +     +
Sbjct: 141 FVQENGGCKLRFAKSTLKKSNVDPQYAACVTVSGDSMLPVLQDGTTVGVDTSKKNIIDGK 200

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILWAS 222
           +      G +  K+L    G  I + S N   YP + ++      I+ I  + W S
Sbjct: 201 MYAIDHDGMLRVKILYRMPGGGIRIKSYNNDEYPDEFIQPEQMSNIKIIGWVFWWS 256


>gi|226940913|ref|YP_002795987.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
 gi|226715840|gb|ACO74978.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
          Length = 262

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 30/237 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  + +  N++ +  A   G+  ++    +        R P    +   +     
Sbjct: 27  ELGARLKEVRKARNVSRNEAAAAVGVSVSTMQAWEAGE-----REPDATKLSSFVRHYGV 81

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP-------------PSGSGGFFDSGVFPTGNK 114
               LL       +     + E P                           +     G+ 
Sbjct: 82  RADWLLFGDGGMFKPAAPTQAESPRSEVDCPCLDTLGNPVNLQDFVFIPRYNLKASAGHG 141

Query: 115 WNTVGVPEIRSPHNGIYAI-------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
            +  G   I S     Y I           +    +  SM  +    D++++N A     
Sbjct: 142 LDANGEKPIFSMAFRRYWIDNFLRIDPHDLSVLSVKGDSMEGVLNDRDVILINHADNA-P 200

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI----EWIARILW 220
            D L +    GD+V K L  + G  I ++S N  Y    ++++D+      + R++W
Sbjct: 201 KDGLYVLRIDGDLVVKRLQRKPGGKIGIISANEAYAPYDIDLNDLPNDFAIVGRVVW 257


>gi|145298596|ref|YP_001141437.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851368|gb|ABO89689.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 227

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 75/219 (34%), Gaps = 20/219 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------KIL 62
           I + I       NL+ + LA+  G+   S  K +    + + R+ +  +         +L
Sbjct: 3   ISDRIFSRRTALNLSKTALAKAIGVSDVSVGKWESGLNQPKGRYLNDLAAALGVTVDWLL 62

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A + +   Q +    +       + + IP++ +  +G+                 V    
Sbjct: 63  AGSGDGPEQPIPGYHNVEPAVIPQGRRIPVISYVHAGNWREMCEQATTFDGNVEYVTASV 122

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              P                +  SMLP +++GD++I++       GD ++ +    +   
Sbjct: 123 DIGP---------CGFGLWMRGDSMLPQFKEGDLIIVDPDEVPQPGDYVVARNGNNEATF 173

Query: 183 KVLISRRGRS-----IDLMSLNCCYPVDTVEMSDIEWIA 216
           K    R          +L+ LN  YP    +   I+ I 
Sbjct: 174 KKYRPRGVDENGQEVFELVPLNDDYPSMHSDRQHIQIIG 212


>gi|163795623|ref|ZP_02189589.1| LexA repressor [alpha proteobacterium BAL199]
 gi|159179222|gb|EDP63755.1| LexA repressor [alpha proteobacterium BAL199]
          Length = 241

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 57/236 (24%), Gaps = 18/236 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +    ++   I +  E   ++PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQHELLAFIQKRIEESGVSPSFDEMKDALDLKSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  ---------STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
                    + + + +   +                                   S    
Sbjct: 61  ARALEVLRTADQVVARGARSDRPAARGFTPNVIPGNFPFRGDPPVAAPTPGEGPESIDLP 120

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
             G    G     +  P           +       +    SM+      GD +I+    
Sbjct: 121 MYGRIAAGTPIEALRDPSTSIAVPASMLVGGDHYALEVSGDSMIDAGILDGDTIIIRQCD 180

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G  ++      +   K L  + G+SI L   N  Y         ++   +++
Sbjct: 181 TAENGSIVVALVDEQEATLKRLRRK-GQSIALEPANSAYETRIFGPDRVKVQGKLV 235


>gi|227514731|ref|ZP_03944780.1| possible repressor lexA [Lactobacillus fermentum ATCC 14931]
 gi|227086935|gb|EEI22247.1| possible repressor lexA [Lactobacillus fermentum ATCC 14931]
          Length = 212

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 76/217 (35%), Gaps = 22/217 (10%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S++++ + ++ + ++  ++ S LARK  +  ++ ++       G+ ++P           
Sbjct: 10  SNEEVIKYLNELRKQQKISISELARKVDMSKSTVSQYFN----GKLQFP-LNRAHDFARV 64

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              T   LL L  S      +       L   P          +    N  + +  P   
Sbjct: 65  LGVTTDDLLGLDLSKVNPINR-------LTKIPLLGTIACGDPILADENITDYLTEPVD- 116

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAK 183
                 Y    +    + +  SM P  + G ++++    +V  G+   ++     +   K
Sbjct: 117 ------YLPSGKLFYLRAKGQSMEPTIKNGSLVLIRQQPEVEDGEIAAVLFTDDDEATLK 170

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            +    G ++ L+  N  Y    V   + +  + + +
Sbjct: 171 RVKR-SGDTMILLPDNRRYEPIIVSKDNPVRILGKAV 206


>gi|154148443|ref|YP_001405854.1| hypothetical protein CHAB381_0248 [Campylobacter hominis ATCC
           BAA-381]
 gi|153804452|gb|ABS51459.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 233

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 30/234 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I ++ +    T   LA  +G+   S    +      + +  +TE++ KI  A + 
Sbjct: 2   ELSNRIKQLRDIKGWTQQELADYSGVSIDSIKGYE----SKKTKNITTENLNKIAKAFDL 57

Query: 68  TICQLLDLPFSDGRTTEKK--------------EKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            I    +   S     +                     L     + S  +FD      G 
Sbjct: 58  NISNFYNNDLSVSEIEKCPLGVHKSSVSDKKSVVTPPNLKMSQDNFSVPYFDDVYASAGG 117

Query: 114 KWNTVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            +     P      +  +          ++    K++  SM P   K  +L +     V 
Sbjct: 118 GYINDENPPKMIEFSKSFLRDYLGTVEFSRLNIIKSKGDSMEPTIPKNALLFIRLG-DVE 176

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            G   + +    ++  K L  R    + L+S N  Y   T++  +  E I  ++
Sbjct: 177 EGQICVARID-DELYVKRLQKRP--VVKLISDNPDYDPITLQPDENFEIIGCVI 227


>gi|315268235|gb|ADT95088.1| transcriptional regulator, XRE family [Shewanella baltica OS678]
          Length = 204

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 19/214 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E + R+ +   +T   LA       TS  K +R   +   R  + E++ K L  T  
Sbjct: 2   DIAERVKRLRKALGMTQYELADLVSTAQTSIQKLERGDTK-NPR--NIEALAKALQTTP- 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              + L     +             L        G +                P   S H
Sbjct: 58  ---EFLRFGVGELDNATVVASAGNYLPLISMVQAGVWTEIQELPPLDVELYPCPIKCSQH 114

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLI 186
                        + +  SMLP + +GD++ ++   QV  G  ++ +         K LI
Sbjct: 115 ---------SFIVRVEGESMLPRFEEGDLIYVDPDAQVENGSYVVARLDDENQATFKQLI 165

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
               +   L +LN  +P   VE++ +   + +++
Sbjct: 166 IDGNKKY-LKALNPDWPNKFVEINGNCTIVGKVV 198


>gi|326795087|ref|YP_004312907.1| phage repressor like transcriptional regulator, XRE family
           [Marinomonas mediterranea MMB-1]
 gi|326545851|gb|ADZ91071.1| phage repressor like transcriptional regulator, XRE family
           [Marinomonas mediterranea MMB-1]
          Length = 216

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 13/216 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E +        LT + LA K G+   S  K +    + R   P    +  +  A   
Sbjct: 2   NIAERVKTQRIHLGLTQTELANKVGISQQSLQKIE----DARTSNPR--KLLALAKALEC 55

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   L            +   E      P                   +   + +     
Sbjct: 56  TPEWLQFGIEGVSSGEAESNVEAAPFKAPSKKLPVVSHVQAGAWSEAIDYRSLADDIEWE 115

Query: 128 NGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVA 182
              ++        K    SM         +G +++++  I  + G  ++ K   T ++  
Sbjct: 116 ESPFSASDNAFWLKVVGDSMTSPVGTSIPEGHLILVDPDIPADNGSLVVAKLDGTDEVTF 175

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K L    G+   L  LN  Y    +  +    +  +
Sbjct: 176 KKLYIDAGQKY-LKPLNPNYRPFEINGN-CRIVGVV 209


>gi|160876037|ref|YP_001555353.1| XRE family transcriptional regulator [Shewanella baltica OS195]
 gi|160861559|gb|ABX50093.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
          Length = 204

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 19/214 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E + ++ +   +T   LA       TS  K +R   +   R  + E++ K L  T  
Sbjct: 2   DIAERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTK-NPR--NIEALAKALQTTP- 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              + L     D             L        G +                P   S H
Sbjct: 58  ---EFLRFGVGDMDNATVVASAGNYLPLISMVQAGVWTEIQELPPLDVELYPCPIKCSQH 114

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLI 186
                        + +  SMLP +R GD++ ++   QV  G  ++ +         K LI
Sbjct: 115 ---------SFIVRVEGESMLPDFRPGDLIYVDPDAQVENGSYVVARLDDENQATFKQLI 165

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
               +   L +LN  +P   VE++ +   + +++
Sbjct: 166 IDGNKKY-LKALNPDWPNKFVEINGNCTIVGKVV 198


>gi|240016860|ref|ZP_04723400.1| transcriptional regulator [Neisseria gonorrhoeae FA6140]
 gi|240113645|ref|ZP_04728135.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|240116383|ref|ZP_04730445.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|240117610|ref|ZP_04731672.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|240123164|ref|ZP_04736120.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|260439787|ref|ZP_05793603.1| putative phage repressor protein [Neisseria gonorrhoeae DGI2]
 gi|268599708|ref|ZP_06133875.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268602050|ref|ZP_06136217.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268603316|ref|ZP_06137483.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268681792|ref|ZP_06148654.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|291043050|ref|ZP_06568780.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|268583839|gb|EEZ48515.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268586181|gb|EEZ50857.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268587447|gb|EEZ52123.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268622076|gb|EEZ54476.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|291013025|gb|EFE05001.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
          Length = 238

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 64/242 (26%), Gaps = 29/242 (11%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H+ +    D    +   TP+  AR   +   +    +        R  S +++ ++ 
Sbjct: 1   MEKHETVIRLFDAAKTKGKNTPAETARLLNISQQTLKNWES-------RGISAKALPEVA 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------------GFFDSG 107
                +   L     S              +                        +    
Sbjct: 54  QVLGVSETWLRTGEGSRTAPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKES 113

Query: 108 VFPTGNKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
            F  G     +       +P  +S                    SM     +   + +++
Sbjct: 114 CFKGGAGAYEIPDYNGYRLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDT 173

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILW 220
                   ++    + G    K LI + G S+ + S N   YP +T  +  +  I R+ W
Sbjct: 174 GETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFW 233

Query: 221 AS 222
            S
Sbjct: 234 WS 235


>gi|187733300|ref|YP_001879888.1| repressor protein C2 [Shigella boydii CDC 3083-94]
 gi|187430292|gb|ACD09566.1| repressor protein C2 [Shigella boydii CDC 3083-94]
          Length = 218

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 88/218 (40%), Gaps = 13/218 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +    ++  LT   LA+KAG+   + +K+++       +  + +++FK+ AA  
Sbjct: 2   KSLGERLINARQKAGLTQDALAKKAGITRVAISKAEQGLT----KSFNGDTLFKVAAALG 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L +      +  E   K  P      S     +        +  +     +    
Sbjct: 58  CSPQWLQNGDEK-DKHWENNVKSCPQRDTAHSYPVINWVQAGLFATSGDDYNMYDQDNWR 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181
           H+  YA + +    +    SM       + +G  +++N   +V  G  ++ + + T +  
Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K  IS  G++  L  LN  YP+  ++ +D E +  ++
Sbjct: 176 FKKYISDMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211


>gi|170717358|ref|YP_001784466.1| phage repressor [Haemophilus somnus 2336]
 gi|168825487|gb|ACA30858.1| putative phage repressor [Haemophilus somnus 2336]
          Length = 229

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 61/228 (26%), Gaps = 22/228 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   ++ +  +  ++ S LAR  G+   S +K          R P   +I +I  A  
Sbjct: 2   NTLASRLNYLMNKIGVSQSELARYIGITQPSVHKILNGET----RNPK--NIVEIATALG 55

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +  L         T       +                     G+       PE  S 
Sbjct: 56  VDVHWLKTGEGEPNITPHSSI-LVSNEPDEKHTHRINRYDFQLSAGDGIINSDYPETISS 114

Query: 127 HNGI---------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                           +      K    SM P     D++ +++ I    GD +      
Sbjct: 115 IWLTPEGMMQIIGRYSEKGICIFKVPTDSMEPTISSKDLVFIDTNITYFAGDGIYAFRLN 174

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIA---RIL 219
           G    K L       I  +S N  Y    +        E +    R++
Sbjct: 175 GKDYIKRLQQLPTGIIRALSDNKLYDPFDITEELFDTAEIVGKFIRVV 222


>gi|217973784|ref|YP_002358535.1| putative phage repressor [Shewanella baltica OS223]
 gi|217498919|gb|ACK47112.1| putative phage repressor [Shewanella baltica OS223]
          Length = 243

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 22/236 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + + I    +   L+   +A+  G++  S +  +  G  G    P   ++  +     
Sbjct: 3   KSMGKRIAERRKELGLSQDVVAKYVGINRVSVSNWETDGKNGT--SPKGANLIALAELLK 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFP----------PSGSGGFFDSGVFPTGNKWN 116
            T   LL+      +T  ++        F              +  F+       GN   
Sbjct: 61  CTPEWLLNGEDEALKTENRESNAQWHAGFELWDGDTPLRDDEVALPFYREVELAAGNGST 120

Query: 117 TVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            V       +   +S                    SMLP+ R G  + ++++ +      
Sbjct: 121 FVQENGGCKLRFAKSTLKKSNVDPQHAACVTVSGNSMLPVLRHGTTVGVDTSKKSIIDGE 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS---DIEWIARILWAS 222
           +      G +  K+L    G  I + S N   +P + ++     +I+ I  + W S
Sbjct: 181 MYAIDHDGMLRVKMLYRTPGGGIRIKSYNNDEFPDEFIQPDKVSEIKIIGWVFWWS 236


>gi|209919283|ref|YP_002293367.1| putative phage repressor [Escherichia coli SE11]
 gi|209912542|dbj|BAG77616.1| hypothetical phage repressor [Escherichia coli SE11]
          Length = 218

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 87/218 (39%), Gaps = 13/218 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +    ++  LT   LA+KAG+   + +K+++       +  + +++FK+ AA  
Sbjct: 2   KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTLFKVAAALQ 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L +      +  E   K  P      S     +           +     +    
Sbjct: 58  CSPQWLQNGDEK-DKHWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYNMYDQDNWR 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181
           H+  YA + +    +    SM       + +G  +++N   +V  G  ++ + + T +  
Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K  IS  G++  L  LN  YP+  ++ +D E +  ++
Sbjct: 176 FKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211


>gi|224823653|ref|ZP_03696762.1| putative phage repressor [Lutiella nitroferrum 2002]
 gi|224604108|gb|EEG10282.1| putative phage repressor [Lutiella nitroferrum 2002]
          Length = 324

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 23/232 (9%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S   + + +    E   LT   LA++ G+   + N  +    +G      T+ +  I  A
Sbjct: 93  SMDTLGKRVTHARELKGLTQLELAKRVGVSAQTINFVENGRNKG------TKHLLAIAKA 146

Query: 65  TNETICQLLDLPFSDGRTTEKK-EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
              +   L     S    + +  E          SG   F                    
Sbjct: 147 LGVSATWLDSGKGSMTEVSLRPIEVWEDEEQLAQSGEYIFLPELSVRPSAGPGAQVWHVD 206

Query: 124 RSPHNGIY---------AIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLI 173
            +     +                       SM P    GD ++++          ++ +
Sbjct: 207 TAGQRQAFTAKWARRMSIDPACAATMVVSGDSMEPRLLDGDSIVVDYCQNDTIIDGKVYV 266

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSD---IEWIARIL 219
                ++  K L    G  + + S N     +P   V   +   +  + R++
Sbjct: 267 LVINDEVKVKRLFKAIGGGLIIRSDNPDKNTHPDLNVRAEEMMHVRIVGRVV 318


>gi|194466453|ref|ZP_03072440.1| transcriptional regulator, XRE family [Lactobacillus reuteri
           100-23]
 gi|194453489|gb|EDX42386.1| transcriptional regulator, XRE family [Lactobacillus reuteri
           100-23]
          Length = 220

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 61/216 (28%), Gaps = 11/216 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
              I   + R+ +    T + LA K  +   + +  +        + P   S+  +    
Sbjct: 3   ENTIASQLKRLRKSRGWTQTQLADKLSVSKQTISNWETGT-----KVPRMGSLQNLADLF 57

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           +  I ++ +       T       I                G    G+        E   
Sbjct: 58  HVKIGEITNASIIKEETQSHLPTNIIYPLGDDFERISIPLIGEIACGDPITADENIEGYV 117

Query: 126 PHNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAK 183
                  +        + +  SM P    G I+ +     V  G+   ++     +   K
Sbjct: 118 EEIFEKPVPKGNLFALRCKGKSMEPTIHDGSIVTIREQPTVEDGEIAAVLVDGDNEATLK 177

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +  + G  I LM  N  +    ++  +     RI+
Sbjct: 178 RVKHQ-GNLIMLMPDNKEFDPIILDKDN---PGRIV 209


>gi|57234333|ref|YP_181610.1| transcriptional repressor LexA, putative [Dehalococcoides
           ethenogenes 195]
 gi|57234921|ref|YP_181022.1| transcriptional repressor LexA, putative [Dehalococcoides
           ethenogenes 195]
 gi|57234968|ref|YP_180999.1| transcriptional repressor LexA, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224781|gb|AAW39838.1| transcriptional repressor LexA, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225369|gb|AAW40426.1| transcriptional repressor LexA, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225416|gb|AAW40473.1| transcriptional repressor LexA, putative [Dehalococcoides
           ethenogenes 195]
          Length = 217

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 74/217 (34%), Gaps = 18/217 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  + ++  +T S LAR++G+D    ++ +     G+    +     K+    + +
Sbjct: 7   IGITLKELRKKIGMTQSELARRSGVDRAYISQLE----SGKTYSATLGIAQKLARGLDIS 62

Query: 69  ICQLLDLPFSDGRTTEKKE-----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
              LL            +      +   + + P  G        +       + V VP+ 
Sbjct: 63  TSALLGEKEESLGNLLSRAQAISRRMDDIEFIPVIGYIPAGYPELVDEEAASDYVPVPKE 122

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +        +    +    S+       GDI+I++   ++  G    ++    ++ A
Sbjct: 123 LLKN-----ASKRVYALRVSGESLKGDGIENGDIIIVDKDSEMFEGKIYAVRTAHNEVTA 177

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L       I L S N  Y    +  +D   + R++
Sbjct: 178 KHLY-LNNGQIILRSSNGDYKDLVMTNAD--ILGRVI 211


>gi|18249875|ref|NP_543063.1| putative lambda repressor [Enterobacteria phage phiP27]
 gi|18152342|emb|CAC83529.1| putative lambda repressor [Enterobacteria phage phiP27]
          Length = 218

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 86/218 (39%), Gaps = 13/218 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +    ++  LT   LA+KAG+   + +K+++       +  + +++FK+ AA  
Sbjct: 2   KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTLFKVAAALQ 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L        +  E   K  P      S     +           +     +    
Sbjct: 58  CSPQWLQSGDEK-DKHWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYNMYDQDNWR 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181
           H+  YA + +    +    SM       + +G  +++N   +V  G  ++ + + T +  
Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K  IS  G++  L  LN  YP+  ++ +D E +  ++
Sbjct: 176 FKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211


>gi|254460292|ref|ZP_05073708.1| LexA repressor [Rhodobacterales bacterium HTCC2083]
 gi|206676881|gb|EDZ41368.1| LexA repressor [Rhodobacteraceae bacterium HTCC2083]
          Length = 232

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 66/229 (28%), Gaps = 13/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I++  ++  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFINKRMQKDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +   T    +   F  G+      +    +    +        G    G
Sbjct: 61  ARAIEIVKLPDSLGMTPAGFVPRVFEGGKPDVPAPRNAQPVEAIHA--MELPVMGQIAAG 118

Query: 113 NKWNTVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                +            + +   +    + +  SM+      GD +++      + GD 
Sbjct: 119 VPIEAISHASHNVAVPSQMLSGPGEHYALEVKGDSMIDAGINDGDTVVIRETNTADNGDI 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K      G +I L + N  Y         ++   R++
Sbjct: 179 VVALVEDQEATLKRFHR-NGTTIALEAANPAYETRFFSHEQVKVQGRLV 226


>gi|71901612|ref|ZP_00683692.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Ann-1]
 gi|71728622|gb|EAO30773.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Ann-1]
          Length = 406

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 67/250 (26%), Gaps = 43/250 (17%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +        +T   LA   G+ P S +         + ++   E++ K   A N +
Sbjct: 153 LAERLRIAMIEAGMTQKQLADAVGVKPPSIHGWL----SSKAKFLRGENLLKAAKALNVS 208

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPP---------------------SGSGGFFDSG 107
              L          T    +E PL                          +         
Sbjct: 209 EKWLATGTGLMRAVTAIPAQETPLRQESQHINLDTYEFQAIDDGEALDPEANVLVDEVDV 268

Query: 108 VFPTGNKWNTVGV-------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
           +   GN              P         +         +    SM       D +++N
Sbjct: 269 MLSAGNGVLIPEFIETKFQMPFPLPWLRHAHINPKDVKLMRVHGDSMERTLFDKDRVMVN 328

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD- 211
            A       ++      G+   K L + R   + ++S N          Y  + V  S+ 
Sbjct: 329 FADTRVRDGKVYAIAIGGEAKVKRLYTLRNNGLRIVSDNQNKDSEGHRIYKDEIVPPSEM 388

Query: 212 --IEWIARIL 219
             ++ + R++
Sbjct: 389 ETVQVLGRVI 398



 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ + H +T   LA   G   +     +  G     R PS   I  I      T  
Sbjct: 77  ENLRRLRKSHGMTQEQLALTCGWGQSRIANYESRGSSA--REPSFNDIEIISRVLGVTKA 134

Query: 71  Q 71
           +
Sbjct: 135 E 135


>gi|56964628|ref|YP_176359.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16]
 gi|56910871|dbj|BAD65398.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16]
          Length = 209

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 18/215 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + +   R   + + LA    +   + ++ ++       R P  E +  I    + T
Sbjct: 8   LAENLMKARIRKGYSQTDLAEILNVSSATISQYEKG-----KRSPDVEKLHTIAKVLDTT 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I +L+     +       +  + +       +G    +     G  +             
Sbjct: 63  IPELIMGQSDNEALKLNMQSLVKIPILGTVRAGYNLLADENVIGYAY-----------AP 111

Query: 129 GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                         +  SM+      GD +++      + G   ++     +   K +  
Sbjct: 112 KSDIGDGDYFYLNIEGDSMIDAGLNSGDRILVRKQNHTSDGSIAVVLINGEEATVKRVFF 171

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
              + I L   N        +  +I  + +++ AS
Sbjct: 172 DSNKVI-LSPENPHMRPQFYDEDEIRILGKVVSAS 205


>gi|295106591|emb|CBL04134.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Gordonibacter pamelaeae 7-10-1-b]
          Length = 215

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 22/220 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I R+   H LT   L + AG+ P + ++ +          P   +I ++      
Sbjct: 2   ELGSNIKRLRVEHCLTQGELGKIAGVSPMAVSQWENGRAV-----PRMGAIQRMADYFGI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +          +             +    +   G         G+    + V E     
Sbjct: 57  SK----SSLIDNAADGFVAGSVHYEVTSLTAPVYG-----RISAGDALEMLPVTEEAYVI 107

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +               SM  +   G ++  + + +V  GD + +     D   K +  
Sbjct: 108 PPVAESHPDGFFLTVSGDSMDKIMPNGSLVYFDKSAEVRSGDIVAVTVNGDDATMKRIFF 167

Query: 188 RRGRSIDLMSL--NCCYPVDTVEMSD-----IEWIARILW 220
             G +I L     N  +   +++ SD     +  + + +W
Sbjct: 168 -AGDTIVLHPESNNPSHRDRSIDASDPDAPQVRILGKAVW 206


>gi|312897732|ref|ZP_07757148.1| LexA repressor family protein [Megasphaera micronuciformis F0359]
 gi|310621116|gb|EFQ04660.1| LexA repressor family protein [Megasphaera micronuciformis F0359]
          Length = 218

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 18/221 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAA 64
           + I + I    + H L+     ++ GL     +  +R       +   PS +++  I   
Sbjct: 2   ENIGDLIREYRQSHGLSMEEFGKRVGLSKAYISLIERGKNTRSNKPIVPSIDTMKAIADG 61

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
               +  LL       +          +                   G     V      
Sbjct: 62  LEMDLDVLLRSIDPSQKIKINNTHPKGVQIPVLGR---------VVAGVPLEAVEEILDY 112

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                  A   +    + +  SM P   +GD++I+     V+ GD  ++     +   K 
Sbjct: 113 EEITPELAATGEFFALQIRGRSMEPRMLEGDVVIVRRQSDVDSGDIAIVLVNGDEATVKR 172

Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARIL 219
           +     R I L++ N   Y        +     ++ + +++
Sbjct: 173 VSK-SDRGITLIATNPNVYEPHFYSSEEINDLPVQILGKVV 212


>gi|183600843|ref|ZP_02962336.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827]
 gi|188019628|gb|EDU57668.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827]
          Length = 234

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 23/230 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + + +  +   +T + LA+  G+   +  K +        R      + +I  A N  
Sbjct: 5   LAQRLKQARKNAGITQNELAKLVGVSQAAIQKIETGKAATSTR------LIEISKALNVD 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTVG-VPEIRS 125
              L      +         +I L     +               G     +    E  +
Sbjct: 59  PEWLSVGTGDNPVPHISSSVKIELADDVGNIERYRVEVLDVEASAGEGVIVIDDFIETIT 118

Query: 126 PHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                     +               +  SM   +   D + ++       GD + +   
Sbjct: 119 SIEYSVEEAKRLFGGRPSNTIKMITVKGDSMAETFEPRDQIFVDITTNFFDGDGIYVFVL 178

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILWASQ 223
              +  K L  +  + + ++S N  Y    ++   I      A++L  SQ
Sbjct: 179 DNQLYIKRLQKQY-KRLAVISDNPRYETWYLDEDAINGLYICAKVL-VSQ 226


>gi|114569948|ref|YP_756628.1| LexA repressor [Maricaulis maris MCS10]
 gi|122316090|sp|Q0APU7|LEXA_MARMM RecName: Full=LexA repressor
 gi|114340410|gb|ABI65690.1| SOS-response transcriptional repressor, LexA [Maricaulis maris
           MCS10]
          Length = 232

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 67/228 (29%), Gaps = 12/228 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +    ++   I    +   ++PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQNELLLFIHNRIKETGVSPSFDEMKGALQLASKSGVHRLITALEERGFIRRLAHR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+  +      +   +P  D      +             +      G    G
Sbjct: 61  ARALEVLKLPESAA--AHETPAIPKGDLGANVVRGNFAKPEPDARENTVDIPMLGRIAAG 118

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171
              + +     R P      +  +    + +  SM       GD +++        GD +
Sbjct: 119 VPISAIQHETDRFPVPADMVMGGEHFGLEVKGDSMIEAGIMDGDTVLIRRCQSAETGDIV 178

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K L  ++G S+ L + N  Y         ++   R++
Sbjct: 179 VALIDDEEATLKRL-RKKGGSVALEAANPEYETRIFPPDRVKVQGRLV 225


>gi|192291420|ref|YP_001992025.1| phage repressor [Rhodopseudomonas palustris TIE-1]
 gi|192285169|gb|ACF01550.1| putative phage repressor [Rhodopseudomonas palustris TIE-1]
          Length = 264

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 18/228 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE-----SIFKILAA 64
              I +  E+   +   LA + G+   +  K +          P         +  +  +
Sbjct: 33  GNIIRQAREQKGWSQKDLADRVGISQPAIRKIEGGSTVKSKHLPKIAQVLGLDLQHLDES 92

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS--------GSGGFFDSGVFPTGNKWN 116
            ++          S G     +     L     +               +G +    K  
Sbjct: 93  LDQLTNVESQAFSSTGDVNHHRPASGILEIDVRAGMGGGGSVEGREVVHNGRYSDPVKEE 152

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
               P        + A +++    +TQ  SM P    GD +I+++  ++   D +     
Sbjct: 153 AWHFPARFLREE-LRAPESRVQILETQGDSMAPTILSGDRVIIDTGHRLPSPDGIYAIRD 211

Query: 177 TGDI-VAKVLI---SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
                V K L         +I ++S N  +  + V   +I  + R+LW
Sbjct: 212 RFGAIVVKRLQVLRRGEPPTIRVISDNKAHDSEDVGADEIHIVGRVLW 259


>gi|320178346|gb|EFW53317.1| repressor protein c2, putative [Shigella boydii ATCC 9905]
          Length = 218

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 13/218 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +    ++  LT   LA+KAG+   + +K+++       +  + +++FK+ AA  
Sbjct: 2   KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTLFKVAAALQ 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L +     G+  E   K  P      S     +      T    +     +    
Sbjct: 58  CSPQWLQNGDEK-GKHWENNVKSCPQRDTAHSYPVINWVQAGLFTTAGDDYNMYDQDNWR 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181
           H+  YA + +    +    SM       + +G  +++N   +V  G  ++ + + T +  
Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPIGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K  IS  G++  L  LN  YP+  ++ +D E +  ++
Sbjct: 176 FKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211


>gi|188491927|ref|ZP_02999197.1| repressor protein C2 [Escherichia coli 53638]
 gi|194434099|ref|ZP_03066368.1| repressor protein C2 [Shigella dysenteriae 1012]
 gi|188487126|gb|EDU62229.1| repressor protein C2 [Escherichia coli 53638]
 gi|194417643|gb|EDX33743.1| repressor protein C2 [Shigella dysenteriae 1012]
 gi|332096959|gb|EGJ01947.1| repressor protein C2 [Shigella dysenteriae 155-74]
          Length = 218

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 88/218 (40%), Gaps = 13/218 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +    ++  LT   LA+KAG+   + +K+++       +  + +++FK+ AA  
Sbjct: 2   KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTLFKVAAALQ 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L +     G+  E   K  P      S     +           +     +    
Sbjct: 58  CSPQWLQNGDEK-GKYWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYNMYDQDNWR 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIV 181
           H+  YA + +    +    SM       + +G  +++N   +V  G  ++ + + T +  
Sbjct: 117 HSVKYAGE-RGFWLEVHGDSMTSPIGITFPEGMSILVNPDKEVFSGCYVIARKKSTNEAT 175

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K  IS  G++  L  LN  YP+  ++ +D E +  ++
Sbjct: 176 FKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 211


>gi|261318541|ref|ZP_05957738.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|265986342|ref|ZP_06098899.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|261297764|gb|EEY01261.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|264658539|gb|EEZ28800.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
          Length = 170

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 56/146 (38%), Positives = 75/146 (51%), Gaps = 9/146 (6%)

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
                  +    IPLL    +G+GG+FD   FP G  W+ V  P                
Sbjct: 34  RHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTGEG---------V 84

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
              +    SMLPLYR GD LI+     V  GDR++++ R G+++AK+L  +  R+I+L S
Sbjct: 85  YALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTIELHS 144

Query: 198 LNCCYPVDTVEMSDIEWIARILWASQ 223
           LN  +P    E  DIEWIARILWASQ
Sbjct: 145 LNPEHPNRIFESKDIEWIARILWASQ 170


>gi|330897368|gb|EGH28787.1| peptidase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 286

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 65/217 (29%), Gaps = 16/217 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +    +   L  + LA +AG+  TS +  +R   +       T  + KI         
Sbjct: 71  DRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKA------TAHVAKIADVCGVNAL 124

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNG 129
            L D            E     +    S    +        G     V   P   +    
Sbjct: 125 WLSDGKGDMTAFITSNEPSNVSMAEQSSRMYRYPLVSWVAAGEWSEAVEPYPPGAADEYD 184

Query: 130 I--YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182
           +  Y  +        +  SM     P   +G  +++++  +V  G  ++     + +   
Sbjct: 185 VSDYKAKGPAFWLVVKGDSMTAPTAPSIPEGSQILIDTRAEVLPGKLVIAKLAGSNEATF 244

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L+   G    L  LN  YP       D   I  ++
Sbjct: 245 KKLVEDGGVRY-LKPLNSAYPTVQCT-EDCRIIGVVV 279


>gi|114797550|ref|YP_760490.1| LexA repressor [Hyphomonas neptunium ATCC 15444]
 gi|122942416|sp|Q0C1A3|LEXA_HYPNA RecName: Full=LexA repressor
 gi|114737724|gb|ABI75849.1| LexA repressor [Hyphomonas neptunium ATCC 15444]
          Length = 227

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 5/222 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +   K++   I+   +   ++PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTTKQKELLLFINDRIKDTGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLANR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L         +        R              P          G    G+  + +
Sbjct: 61  ARALEVLKLPDSAIPPPNARQRRDFRPALVTNQGAEAPRIAGMIPL-VGRIAAGSPISAI 119

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                +    G           + Q  SM+      GD +IL        GD ++     
Sbjct: 120 QQENGQVASPGGLPEGDDYFALEVQGDSMIQAGILNGDTVILKRTNTAQTGDIVVALIDG 179

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K L  +   S+ L + N  +         +E   R++
Sbjct: 180 EEATLKRLRRKGA-SVALEAANPAFETRIFGPDRVEVQGRLV 220


>gi|119384874|ref|YP_915930.1| LexA repressor [Paracoccus denitrificans PD1222]
 gi|166224639|sp|A1B3Z0|LEXA_PARDP RecName: Full=LexA repressor
 gi|119374641|gb|ABL70234.1| SOS-response transcriptional repressor, LexA [Paracoccus
           denitrificans PD1222]
          Length = 232

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 13/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGL---DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++ E I     R  + PS    K  L     +  ++      +R  I      
Sbjct: 1   MLTRKQIQLLEFIQARMARDGVPPSFDEMKLALDLRSKSGIHRLVTALEERGFIRRLPHR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I ++  + ++       +                +     +        G    G
Sbjct: 61  ARALEIVRLPESLSKGPGFQPRVIEGTMPDRPAPLPRGAMEVSVSAIELPVM--GRIAAG 118

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
                +              + Q +    + +  SM       GD++++        GD 
Sbjct: 119 VPIEAISEISHHIAVPTTMLSGQDRHYALEVRGDSMIEAGINDGDVVVIREQNAAESGDI 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    + G  I L + N  Y    +    +    R++
Sbjct: 179 VVALVDGYEATLKRYRRK-GNMIALEAANPAYETRVLPEDKVRIQGRLV 226


>gi|291326325|ref|ZP_06124059.2| peptidase, S24 family [Providencia rettgeri DSM 1131]
 gi|291314825|gb|EFE55278.1| peptidase, S24 family [Providencia rettgeri DSM 1131]
          Length = 229

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 79/233 (33%), Gaps = 25/233 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H++I +A  R+A++  +T + LA++ G+ P S  + +          P    + K
Sbjct: 1   MKTM-HERIKQA--RLAKK--MTQAELAQQLGVTPQSVQQWETST------EPRKNRVMK 49

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-------PSGSGGFFDSGVFPTGN 113
           I    +     LL           K  K   +  +              ++ S     GN
Sbjct: 50  IAEILSVDAEWLLFGTAKKDGVPAKDFKSREVDTWDSKTPLNDDEVEIPYYKSIELAAGN 109

Query: 114 KWNT------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
             N         +   +S                    SM P+   G  + +N   +   
Sbjct: 110 GSNGGSDNNGYKLRFSKSTLKRYGISAKDVASFPVHGDSMEPVIPSGTTVFVNMGDKTIV 169

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARIL 219
              +    +   +  K+L+ + G  + + S N   YP +T+++  +  + R+ 
Sbjct: 170 DGGIYFIEQEDLLRVKILLRQPGGKLTIRSYNSIDYPDETIDIEKVRVVGRVF 222


>gi|161789249|ref|YP_001595597.1| hypothetical protein BMSA_0010 [Vibrio sp. 23023]
 gi|161761374|gb|ABX77020.1| H-T-H motif hypothetical protein [Vibrio sp. 23023]
          Length = 207

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 29/222 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + + +      LT   LA   G+   + +K +      + R    E + +IL      
Sbjct: 3   VSQILKKKRVEKGLTQQDLADAIGVSAVAVSKWELGQS--KPRKKFHEKLSEILG----- 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                           +K                 + +     G+ +    + +      
Sbjct: 56  --------------VNEKVISGSEKITKSDYVEIPYYNVKAAAGHGYENDELYDREVELV 101

Query: 129 GI----YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
            I    YA ++     K    SM+P++  G  L ++S+  +     L +    G +  KV
Sbjct: 102 PIEALKYAQKSSVFCIKASGDSMVPVFFDGAKLAIDSSKTIVKDGDLYVVSYDGCLRVKV 161

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWASQ 223
           L       I L S N  +  +     ++     I +++W SQ
Sbjct: 162 LFKTLNG-IRLCSYNSMFKDEEYTHEELTTFRVIGKVIWYSQ 202


>gi|87200384|ref|YP_497641.1| putative phage repressor [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136065|gb|ABD26807.1| putative phage repressor [Novosphingobium aromaticivorans DSM
           12444]
          Length = 233

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 12/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  +A    ++ + L+   G + T   +  R   +G  R         +         
Sbjct: 15  SRLVALASGRGVSLASLSALIGRNQTYLQQFVR---KGSPRKLEENDRRTLAEFFGVPES 71

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI------- 123
            L            +    +                           +   EI       
Sbjct: 72  DLGAPSRGSALVVGQGRGIVVPTTRAALAEWADIPRLPLGASAGPGALPAEEIPSGRLRF 131

Query: 124 -RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                 G        +  + +  SM P  R GD ++++   +       +I+     ++ 
Sbjct: 132 SHRWLKGQGLEPAMLSVIEVEGDSMEPTLRDGDEILVDRTARPMRAGIHVIRLD-DMLLV 190

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
           K L    G  + ++S N  YP       ++E + R++W
Sbjct: 191 KRLEPGPGGILRVISDNGAYPRIERPAHEVEIVGRVVW 228


>gi|294853434|ref|ZP_06794106.1| peptidase family S24 [Brucella sp. NVSL 07-0026]
 gi|294819089|gb|EFG36089.1| peptidase family S24 [Brucella sp. NVSL 07-0026]
          Length = 160

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/146 (38%), Positives = 75/146 (51%), Gaps = 9/146 (6%)

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
                  +    IPLL    +G+GG+FD   FP G  W+ V  P                
Sbjct: 24  RHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTGEG---------V 74

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
              +    SMLPLYR GD LI+     V  GDR++++ R G+++AK+L  +  R+I+L S
Sbjct: 75  YALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTIELHS 134

Query: 198 LNCCYPVDTVEMSDIEWIARILWASQ 223
           LN  +P    E  DIEWIARILWASQ
Sbjct: 135 LNPEHPNRIFESKDIEWIARILWASQ 160


>gi|46200913|ref|ZP_00056183.2| COG2932: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 221

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+     + + +    +   L P  +A  AG+  +      R    GR+  PS+E + +
Sbjct: 1   MTT----TLADRMRARMKELELRPLHVAEAAGVGRSFVYDILR----GRSADPSSEKLTR 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + A     I  LL                   +  P          G             
Sbjct: 53  VAAVLQMPIEALLYDEDGKQAPAVTTPSRRDYVAVPFVDVEADMGGGAVAESE-EEGAPW 111

Query: 121 PEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              +S   G+  +        + +  SM P    GD+++L++   +     + +      
Sbjct: 112 HFPKSWLRGVLRLRPAGLRLIRVRGDSMEPTLLGGDVVMLDTTQTIPNPTGIFVLHDGFG 171

Query: 180 IVAKVLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARILW 220
           +VAK L    G  I    ++S N  Y        +I  I RI+W
Sbjct: 172 LVAKRLERLAGGEIPSVRIISDNSRYSPYDRSGEEIRIIGRIVW 215


>gi|84515591|ref|ZP_01002953.1| LexA repressor [Loktanella vestfoldensis SKA53]
 gi|84510874|gb|EAQ07329.1| LexA repressor [Loktanella vestfoldensis SKA53]
          Length = 227

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 4/222 (1%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +     +   I    +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLAFIHTRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L         +           +K             GS      G    G     +
Sbjct: 61  ARALEILKLPDSMMGSGFQPRVIAGDKPASIPTAALPVEGGSMSLPVMGRIAAGVPIEAI 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                          + +    + +  SM       GD++++      N GD ++     
Sbjct: 121 SEVSHHVHVPQSMLGKGEHYALEVKGDSMIEAGINDGDVVVIRETSVANNGDIVVALVEG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K    R G +I L + N  Y         ++   R++
Sbjct: 181 QEATLKRF-RRTGSAIALEAANPAYETRVFRDDQVKVQGRLV 221


>gi|326386994|ref|ZP_08208604.1| putative phage repressor [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208175|gb|EGD58982.1| putative phage repressor [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 250

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 67/222 (30%), Gaps = 13/222 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL----AATN 66
             +  +A    ++ S L+   G +     +  R G   +       ++        +   
Sbjct: 25  ARLVALARERGVSLSALSGMIGRNAAYLQQFVRKGSPRKLEENDRRTLAMFFGVDESELG 84

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE---- 122
                 + +  S GR    +         P                    T+ + E    
Sbjct: 85  APAANEVAVVQSGGRLAFARNGSARSASRPVEAEWVDIPRLALGASAGPGTLALDEAESG 144

Query: 123 ----IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                +     +     Q +  +    SM P    GD ++++ + +       +++    
Sbjct: 145 RLRFSQRWLRTLGLDPGQLSVIEVAGDSMEPTLHDGDEILVDRSPRPWRDGIHVVRID-E 203

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
            ++ K L +    +I +MS N  YP       D+  I R++W
Sbjct: 204 VLLVKRLETGPAGTIRVMSDNPAYPRIERAYEDVAIIGRVVW 245


>gi|315656844|ref|ZP_07909731.1| LexA repressor [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492799|gb|EFU82403.1| LexA repressor [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 227

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 14/227 (6%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53
           M+  +   +++   + R++++    PS   LA   GL   S  K     +  +    R P
Sbjct: 1   MSDLTKRQQEVLTTLYRLSQKLAYPPSVRELAEAMGLSSPSSVKHHLDVLTQKGYLRRAP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +T    + +        +        G +       IP+     + +      G    G 
Sbjct: 61  NTPRALEFVKLP--EGFETPSPDPVSGASQSATITTIPVGIADTAVATPVPLVGQIAAGA 118

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 + E        +    +      +  SM       GD +++    +   G+ + 
Sbjct: 119 PITAEEMVEDTFALPRRFTGSGELFMLTVKGDSMQEGGILDGDWVVVRHQNEARNGEIVA 178

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K         + L+  N  Y            + +++
Sbjct: 179 AMLD-GEATVKEFSR-ADGHVWLLPHNENYAPI--PGDTATILGKVV 221


>gi|157834973|ref|YP_001469130.1| c repressor [Phage MP22]
 gi|117373087|gb|ABH09825.1| c repressor [Pseudomonas phage MP22]
          Length = 209

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 10/201 (4%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           + S LAR AG+      +  + G       P+   +  +  A   ++  L+    S    
Sbjct: 10  SASALARNAGISQGGLQRYLKGG------EPTRRVLISLAKAAGVSLGWLMTGEGSKKPE 63

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
            ++       +Y P   +      G +  G    T  +   R   +      T+ +  + 
Sbjct: 64  EQEATGSDQYVYVPLYDARVSAGHGSWSEGAHVLT-QLAFTRYSLSKKGLEPTRMSAVRV 122

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM PL   GD ++++  ++    + + +      + AK L  +   SI ++S N  Y
Sbjct: 123 GGDSMEPLLSDGDAVVIDHDLRTVRDEAIYVIRVGDQLYAKRLQRQFDGSIAIISENKAY 182

Query: 203 PVDTVEMS---DIEWIARILW 220
               V      D++ I R++W
Sbjct: 183 KDMVVPKDQLSDLDIIGRVVW 203


>gi|323174633|gb|EFZ60254.1| repressor protein C2 [Escherichia coli LT-68]
          Length = 240

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 19/226 (8%)

Query: 5   SHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           SH++      + E +    ++  LT   LA+KAG+   + +K+++       +  + +++
Sbjct: 16  SHERRRKMKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLT----KSFNGDTL 71

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           FK+ AA   +   L +     G+  E   K  P      S     +           +  
Sbjct: 72  FKVAAALQCSPQWLQNGDEK-GKYWENNVKSCPQRDTAHSYPVINWVQAGLFATAGDDYN 130

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIK 174
              +    H+  YA + +    +    SM       + +G  +++N   +V  G  ++ +
Sbjct: 131 MYDQDNWRHSVKYAGE-RGFWLEVHGDSMTSPIGITFPEGMSILVNPDKEVFSGCYVIAR 189

Query: 175 PR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            + T +   K  IS  G++  L  LN  YP+  ++ +D E +  ++
Sbjct: 190 KKSTNEATFKKYISEMGKAF-LKPLNPQYPIIEMD-NDCEIVGVVV 233


>gi|298346690|ref|YP_003719377.1| repressor lexA [Mobiluncus curtisii ATCC 43063]
 gi|304389601|ref|ZP_07371563.1| repressor LexA [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|298236751|gb|ADI67883.1| repressor lexA [Mobiluncus curtisii ATCC 43063]
 gi|304327154|gb|EFL94390.1| repressor LexA [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 227

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 14/227 (6%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53
           M+  +   +++   + R++++    PS   LA   GL   S  K     +  +    R P
Sbjct: 1   MSDLTKRQQEVLTTLYRLSQKLAYPPSVRELAEAMGLSSPSSVKHHLDVLTQKGYLRRAP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +T    + +        +        G +       IP+     + +      G    G 
Sbjct: 61  NTPRALEFVKLP--EGFEAPSPDPVSGASQSATITTIPVGIADTAVATPVPLVGQIAAGA 118

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 + E        +    +      +  SM       GD +++    +   G+ + 
Sbjct: 119 PITAEEMVEDTFALPRRFTGSGELFMLTVKGDSMQEGGILDGDWVVVRHQNEARNGEIVA 178

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K         + L+  N  Y            + +++
Sbjct: 179 AMLD-GEATVKEFSR-ADGHVWLLPHNENYAPI--PGDTATILGKVV 221


>gi|258541731|ref|YP_003187164.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
 gi|256632809|dbj|BAH98784.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
 gi|256635866|dbj|BAI01835.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03]
 gi|256638921|dbj|BAI04883.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07]
 gi|256641975|dbj|BAI07930.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22]
 gi|256645030|dbj|BAI10978.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26]
 gi|256648085|dbj|BAI14026.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32]
 gi|256651138|dbj|BAI17072.1| transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654129|dbj|BAI20056.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12]
          Length = 214

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 15/220 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++IW A+D +A+   LTPSGLAR AGLD T+FN S+R   +G  RWP+  S+ + L    
Sbjct: 5   ERIWHALDTLAQERGLTPSGLARAAGLDATTFNPSRRHTGQGVWRWPALPSLLRALDVLR 64

Query: 67  ETICQLLDLPFSDGRT---TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            ++ Q     +   +           +  L        G  D    P G  W        
Sbjct: 65  VSLAQFEGHIWGYEQPDGVEAPAPCFMRSLPLSWLKQEGVLDRAGLPAGGLWEQEET--- 121

Query: 124 RSPHNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                  +++  +     +     M P+ R G  L++  A+     DR+++       V 
Sbjct: 122 ------FFSLPSSSAYMLRVDTEGMEPILRLGCSLVVQPALYPRGADRVVLIRPGQAPVV 175

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
            +L  +   +I     +   PV         W+ RI+  S
Sbjct: 176 GILQEKPVLAIQPFGRSALQPVPQAAAG--VWLHRIVLIS 213


>gi|241759778|ref|ZP_04757878.1| peptidase, S24 family [Neisseria flavescens SK114]
 gi|241319786|gb|EER56182.1| peptidase, S24 family [Neisseria flavescens SK114]
          Length = 238

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 25/241 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGR---------- 49
           MT   H+   + +  +A+    L P+ +A +  +   +    +  GI  +          
Sbjct: 1   MTM--HET-TDRLFEIAKEQGVLKPADIAERLNISQQALKNWESRGIAAKALPEVARVFG 57

Query: 50  --NRWPSTESIFK-----ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
               W  T    +     I       +  +             ++    + Y   S   G
Sbjct: 58  VSETWLRTGEGSRTVPVLIDPGLPHEVKDIHSPMMWSSNDPLPEDDYTFVPYLKESCFKG 117

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
              +   P  N +    +P  +S                    SM     +   + +++ 
Sbjct: 118 GTGAYEIPDYNGY---RLPFGKSTLKRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTG 174

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWA 221
                  ++    + G    K LI + G ++ + S N   YP +T  +  +  I R+ W 
Sbjct: 175 ETAIRDGKIYAFAQDGMFRVKYLIRQPGGNVLIRSHNSGFYPDETAPLDSLTVIGRVFWW 234

Query: 222 S 222
           S
Sbjct: 235 S 235


>gi|163854079|ref|YP_001642122.1| LexA repressor [Methylobacterium extorquens PA1]
 gi|218533024|ref|YP_002423840.1| LexA repressor [Methylobacterium chloromethanicum CM4]
 gi|163665684|gb|ABY33051.1| LexA repressor [Methylobacterium extorquens PA1]
 gi|218525327|gb|ACK85912.1| SOS-response transcriptional repressor, LexA [Methylobacterium
           chloromethanicum CM4]
          Length = 240

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++ + I +  +   + PS    K  LD  S +   R  +    R       + 
Sbjct: 1   MLTRKQLELLQFIQQRMQESGVPPSFDEMKDALDLKSKSGIHRLIMALEERGFLRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----------- 107
            + +               S+ R       E  L   P +       +            
Sbjct: 61  ARAIEILRMPDMPAAKPASSEPRRFTPSVVEGGLSAKPAAPKPPMLQAHDGKGQSVMVPV 120

Query: 108 --VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
                 G   + +         +  +    +    + +  SM       GD+++++    
Sbjct: 121 MGRIAAGVPISAIESQSHSISMSPDFLSGGEHYALEVRGDSMIEAGILDGDLVVIHKQET 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N GD ++      +   K L  R G SI L + N  Y    +    +    +++
Sbjct: 181 ANNGDIIVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGKLV 234


>gi|331019765|gb|EGH99821.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 238

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 22/230 (9%)

Query: 11  EAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +      L+    A + GLD +  ++      +   +  +T    KI       +
Sbjct: 6   QRISALRAAMAGLSQKDFANQHGLDASYLSQLLNGHRKLGEKAAATLE-EKINLHPGSLV 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-- 127
              +                I       S                   V  PE       
Sbjct: 65  NPQVMSDSELTEAVMLDTPPIDSRTLMQSLGFITIPHLNVAASMGSGNVP-PESHIEVIR 123

Query: 128 ------------NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
                          ++             SM   +R GD L+++  I     D + +  
Sbjct: 124 DITVHLDWLKTQGLAFSRIENLAIITGDGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFT 183

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI--LW 220
             GD+  K L    G S+ ++S N  YP   +E +D   +   AR+  +W
Sbjct: 184 LDGDLYIKRLQRMTGGSLRMISDNPLYPAIIIEGADLTKVHIQARVLLVW 233


>gi|188584409|ref|YP_001927854.1| LexA repressor [Methylobacterium populi BJ001]
 gi|179347907|gb|ACB83319.1| transcriptional repressor, LexA family [Methylobacterium populi
           BJ001]
          Length = 240

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +    ++ + I +  +   + PS    K  LD  S +   R  +    R      P+ 
Sbjct: 1   MLTRKQLELLQFIQQRMQESGVPPSFDEMKDALDLKSKSGIHRLIMALEERGFLRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRT----------TEKKEKEIPLLYFPPSGSGGFFD 105
               +IL   +    + +                       +  +   +     S     
Sbjct: 61  ARAIEILRMPDLPAAKPVPSEPRRFTPSVVEGGLSGKPAAPKPPMLQAHDGNGQSVMVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
            G    G   + +         +  +    +    + +  SM       GD+++++    
Sbjct: 121 MGRIAAGTPISAIESQSHTISMSPDFLTGGEHYALEVRGDSMIEAGILDGDLVVIHKQDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N GD ++      +   K L  R G SI L + N  Y    +    +    +++
Sbjct: 181 ANNGDIIVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGKLV 234


>gi|59712644|ref|YP_205420.1| Cro/Cl family transcriptional regulator [Vibrio fischeri ES114]
 gi|59480745|gb|AAW86532.1| transcriptional repressor, Cro/CI family [Vibrio fischeri ES114]
          Length = 215

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 82/217 (37%), Gaps = 13/217 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
                 +  + +   LT S +A+ +G+  +S    ++   +     P  ES+  + +   
Sbjct: 2   DTFGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNK-----PKGESLMALASFLK 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +  LL    S      K+E+E  ++       G +        G  WN + + ++   
Sbjct: 57  CDVNWLLTGQGS--PEPAKQEQETTVVSVALKPQGSYPVISWVQAG-GWNDIHLTDLHDA 113

Query: 127 HNGIYAIQ--TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAK 183
                 ++        K    SM P++R+G+++ ++  ++   G  ++ +         K
Sbjct: 114 DYYPCPVRCSKNTFLLKVVGKSMNPVFREGELIFVDPDVEAVNGKYVVARLDDENQATFK 173

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            LI   G+   L + N  +P   + ++ +   +  ++
Sbjct: 174 QLIIEDGKKF-LQAANPDWPTPIIPINGNCTIVGVVI 209


>gi|257468732|ref|ZP_05632826.1| repressor LexA [Fusobacterium ulcerans ATCC 49185]
 gi|317062987|ref|ZP_07927472.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688663|gb|EFS25498.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 229

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 15/220 (6%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    E    + + LA+  G+  + +N  +R  +         + +  IL  +++    
Sbjct: 6   FLRFKREELGYSQNKLAKTIGITQSYYNTIERGEVRNPPSEEILDKMIAILQLSDKEAAD 65

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----------GVFPTGNKWNTVGV 120
              L   +       E+   L     +                        G    T   
Sbjct: 66  FKYLAAIEKTPPLILEELKRLEKQKDAPPKADIYELKNFDNYIPLYSRISAGIGVFTEEG 125

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P       GI  I         +  SM P  +   I++    ++V  G+        G+ 
Sbjct: 126 PVDFISIPGIRNID-TLFAVNVKGDSMEPTIKNSSIILCRKGVEVRNGEIGAFIVN-GES 183

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
             K L       I L+S N  Y    +    +   I ++L
Sbjct: 184 YVKRL-KITANYIALISDNPNYQPIYIGPGEEFSVIGKVL 222


>gi|324115562|gb|EGC09501.1| helix-turn-helix protein [Escherichia coli E1167]
          Length = 228

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 16/228 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +    E+  ++ + LA K GL   S  K +        +    + I K+L  + 
Sbjct: 2   KTLAERLKIGREKAGMSQAQLAEKIGLSQQSVAKIENGET---LQPRKIKEIAKVLGVSQ 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-----VP 121
           + +   ++   S      K+ +   L                   G     V       P
Sbjct: 59  KWLQLGIEDNASIPDLVVKEAESTALDPDIFVNIPVLDVELSAGNGCLAEIVESAIDWFP 118

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179
             R+         +     K    S+LP+   GD++ ++    + +  GD L        
Sbjct: 119 LRRADLRKSGVCASNAKIVKIWGNSLLPVLNNGDLVAVDISQTVPIRDGD-LYAVRDGVL 177

Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222
           +  K+LI+     + L S N   YP + +   D    I  I R+ W+S
Sbjct: 178 LRVKILINLPDGGLILRSFNKDEYPDEILTFEDRRARIHVIGRVFWSS 225


>gi|296160137|ref|ZP_06842956.1| putative phage repressor [Burkholderia sp. Ch1-1]
 gi|295889611|gb|EFG69410.1| putative phage repressor [Burkholderia sp. Ch1-1]
          Length = 222

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 26/223 (11%)

Query: 8   KIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            + E I  + +    +    LA  AG+   + N+       G+ +    E    I     
Sbjct: 2   NLAERIQTVLDEVDGIDQVKLAEAAGVTKGTVNQWL----TGQIKSIKLEYAVGIQERFG 57

Query: 67  ETICQ-----------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                            +    +         K IP+L     G  GF+    +P G+  
Sbjct: 58  YNPVWLVMGKGSKKVPGIHHEDAFNPIPFPPGKRIPVLGMAQLGDNGFWAEVEYPVGHGE 117

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
             +  P                   +    SMLP  + G+ +++     V  GD +L+K 
Sbjct: 118 GYLDFPSR----------DRDAYGIRCVGDSMLPRIKDGEFVVIEPNHPVENGDEVLVKA 167

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           + G ++ K+L+ +R     LMS+N  +    +E   IE +  +
Sbjct: 168 KDGRVMIKILLYQRAGRTHLMSVNTEHAPLAIETEKIERLHYV 210


>gi|150021357|ref|YP_001306711.1| putative prophage repressor [Thermosipho melanesiensis BI429]
 gi|149793878|gb|ABR31326.1| putative prophage repressor [Thermosipho melanesiensis BI429]
          Length = 206

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 60/213 (28%), Gaps = 22/213 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I  +  +  LT   L     +   + +  +          PS E +  +    + 
Sbjct: 2   NIGEKIKFLRLQKGLTQEQLGNIINVGQRTISAYESGKAT-----PSVEVLKSLADYFDV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +   L              K   +  +                GN       P      
Sbjct: 57  AVDYFLSDKPGQTEVEFVDIKFKKVPLYS----------APVSAGNG----AFPNDIYVL 102

Query: 128 NGIYAIQTQ-DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             I AI    D   K    SM P+   G +L +        GD ++     G I  K  +
Sbjct: 103 GEINAINHDVDFAVKVVGNSMEPIAPDGSVLFVKKQNYAFNGDMIVCTYD-GWIYVKWYV 161

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +    I L+S N  Y    VE  D   I  ++
Sbjct: 162 KQ-NDKILLLSENPTYTPIVVEPKDRFIIHGVV 193


>gi|330999679|ref|ZP_08323388.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
           11859]
 gi|329574185|gb|EGG55761.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
           11859]
          Length = 224

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 12/221 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +        L  S +AR   + P S +        G+++   +  + K+     
Sbjct: 2   KTLAERLTLALSDSGLKKSDIARLCSISPASVSDWF----TGKSKSIKSIYLPKVAKLLG 57

Query: 67  ETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            +   L               E+      +          +  F   +    +      +
Sbjct: 58  VSSTWLATGNGPMKSPNVLVTEEVCDDDDWVEIPEYKIRFAAGFEQNSTLEELASEYKAA 117

Query: 126 PHNGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +           R K +  SM PL    D+++++ +       R+        + 
Sbjct: 118 YRRSWFQRKNINPEDCKRFKVKGDSMEPLLLDHDVVLVDCSKTEIIDGRIYAFVFGNALR 177

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
            K L  +   SI + S N  +  +T+   +   ++ I  ++
Sbjct: 178 VKRLYRKIDGSIVVHSENPNFEDETIKPVDTEQVQIIGEVI 218


>gi|260426266|ref|ZP_05780245.1| LexA repressor [Citreicella sp. SE45]
 gi|260420758|gb|EEX14009.1| LexA repressor [Citreicella sp. SE45]
          Length = 231

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 14/229 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + + I++  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLDFINKRMQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +                    +     P+              G    G
Sbjct: 61  ARAIEIVKLPESLGGRPAGFAPKVIDGDIPDSRPAAARPVATIEAMELQVL---GRIAAG 117

Query: 113 NKWNTV-GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
               ++   P   +   G+ +   +    + +  SM       GD++I+        GD 
Sbjct: 118 EPIQSIADNPPGIAVPTGMLSANARHYALEVRGDSMIEAGINDGDVVIIRETSSAENGDI 177

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++ +    +   K    + G +I L + N  Y    + +  ++   R++
Sbjct: 178 VVAQIEGYEATLKRFRRK-GDAIVLEAANPAYEPRVLPVGSVKVQGRLV 225


>gi|229008902|ref|ZP_04166256.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4]
 gi|228752339|gb|EEM02013.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4]
          Length = 218

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 17/219 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I ++ ++HNL+   L   AG+   + +  ++       + P    I KI       
Sbjct: 3   IGKNIKKLRDKHNLSQKELGEIAGVSDKAVSTWEKG-----LKEPRMGVIQKIADHFGIL 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              +++   S        + EI     P    G                V +P   +  +
Sbjct: 58  KSDIIEDQDSKVTHIRPNQPEIKNNCKPVPLLGAIAAGTPLEMVAVEEWVNIPVEITDCH 117

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                       +    SM  +     + +++  I++  GD   +     D   K     
Sbjct: 118 P------HAFLLRVVGDSMNKVVPPNALALIDPDIEIRNGDVAAVAVNGFDATLKRFYKF 171

Query: 189 RGR-SIDLMSLNCCYPVDTVEM-----SDIEWIARILWA 221
           +   +++  S N  +     +      + +    +++W 
Sbjct: 172 QDGVTLEPESYNPEHKTQFYDSKTQEFTPVVVKGKLVWY 210


>gi|240141533|ref|YP_002966013.1| SOS response transcriptional repressor, lexA [Methylobacterium
           extorquens AM1]
 gi|254564050|ref|YP_003071145.1| SOS response transcriptional repressor, lexA [Methylobacterium
           extorquens DM4]
 gi|240011510|gb|ACS42736.1| SOS response transcriptional repressor, lexA [Methylobacterium
           extorquens AM1]
 gi|254271328|emb|CAX27340.1| SOS response transcriptional repressor, lexA [Methylobacterium
           extorquens DM4]
          Length = 258

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++ + I +  +   + PS    K  LD  S +   R  +    R       + 
Sbjct: 19  MLTRKQLELLQFIQQRMQESGVPPSFDEMKDALDLKSKSGIHRLIMALEERGFLRRLPNR 78

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----------- 107
            + +               S+ R       E  L   P +       +            
Sbjct: 79  ARAIEILRMPDMPAAKPASSEPRRFTPSVVEGGLSAKPAAPKPPMLQAHDGKGQSVMVPV 138

Query: 108 --VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
                 G   + +         +  +    +    + +  SM       GD+++++    
Sbjct: 139 MGRIAAGVPISAIESQSHSISMSPDFLSGGEHYALEVRGDSMIEAGILDGDLVVIHKQET 198

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N GD ++      +   K L  R G SI L + N  Y    +    +    +++
Sbjct: 199 ANNGDIIVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGKLV 252


>gi|293433433|ref|ZP_06661861.1| transcriptional regulator [Escherichia coli B088]
 gi|291324252|gb|EFE63674.1| transcriptional regulator [Escherichia coli B088]
          Length = 228

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 16/228 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +    E+  ++ + LA K GL   S  K +        +    + I K+L  + 
Sbjct: 2   KTLAERLKIGREKAGMSQAQLAEKIGLSQQSVAKIENGET---LQPRKIKEIAKVLGVSQ 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-----VP 121
           + +   ++   S      K+ +   L                   G     V       P
Sbjct: 59  KWLQLGIEDNASIPDLVVKEAESTALDPDIFVNIPVLDVELSAGNGCLAEIVESAIDWFP 118

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179
             R+         +     +    S+LP+   GD++ ++    + +  GD L        
Sbjct: 119 LRRADLRKSGVCASNAKIVQIWGNSLLPVLNNGDLVAVDISQTVPIRDGD-LYAVRDGVL 177

Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222
           +  K+LI+     + L S N   YP + +   D    I  I R+ W+S
Sbjct: 178 LRVKILINLPDGGLILRSFNKDEYPDEILTFEDRRARIHVIGRVFWSS 225


>gi|126731368|ref|ZP_01747175.1| LexA repressor [Sagittula stellata E-37]
 gi|126708279|gb|EBA07338.1| LexA repressor [Sagittula stellata E-37]
          Length = 231

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 14/229 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + + I++   R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLDFINKRMARDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +                R      +   +              G    G
Sbjct: 61  ARAIEIVKLPESLGGAPAGFSPRVIEGDRPDNTPGRATEINTL---DVTELPIMGRIAAG 117

Query: 113 NKWNTV-GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
               ++   P   +    +   Q +    + +  SM       GD++++        GD 
Sbjct: 118 VPIESINDEPPGIAVPGMMLKGQGRHYALEVRGDSMIEAGINDGDVVVIRETSDAADGDI 177

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++ +    +   K    + G  I L + N  Y    +   D+    R++
Sbjct: 178 VVAQIEGYEATLKRFRRK-GEMIVLEAANPAYEPRVLPRGDVNVQGRLV 225


>gi|254710961|ref|ZP_05172772.1| Peptidase family S24 [Brucella pinnipedialis B2/94]
 gi|256029343|ref|ZP_05442957.1| Peptidase family S24 [Brucella pinnipedialis M292/94/1]
          Length = 142

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 77/151 (50%), Gaps = 9/151 (5%)

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           +D          +    IPLL    +G+GG+FD   FP G  W+ V  P           
Sbjct: 1   MDSLPRHLGEYTQDPHPIPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTGEG----- 55

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                   +    SMLPLYR GD LI+     V  GDR++++ R G+++AK+L  +  R+
Sbjct: 56  ----VYALEVSGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRT 111

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           I+L SLN  +P    E  DIEWIARILWASQ
Sbjct: 112 IELHSLNPEHPNRIFESKDIEWIARILWASQ 142


>gi|284006836|emb|CBA72100.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 230

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 83/224 (37%), Gaps = 24/224 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M + +  ++   I  + +  ++   + LAR+  +   + ++       G  + P    + 
Sbjct: 7   MITTT-DRLIRNIQVLMKERDIENVTELARRTRIPQPTMHRLI----SGEIKEPKYALLK 61

Query: 60  KILAATNETICQLLDLP--------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           ++ +  N  + +L++                   + K IP+L     GS G+++   +P 
Sbjct: 62  QVASYFNIPVSELVEKDIGSSKLSSNVLKAEEIFQFKAIPVLGNAQLGSEGYWEELEYPI 121

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
           G     +  P                   K    SM P  + G+ +++        GD +
Sbjct: 122 GYGDGYINWPTK----------DPDAFALKCIGDSMKPRIKNGEYVVIEPNHTYLPGDEV 171

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
            I    G+ + K  +  R   I ++S+N  +P    +++ IE I
Sbjct: 172 FITTSEGEAMVKTFLYERDGVIVVISINENHPPLHFDINRIEKI 215


>gi|221196208|ref|ZP_03569255.1| phage repressor [Burkholderia multivorans CGD2M]
 gi|221202882|ref|ZP_03575901.1| phage repressor [Burkholderia multivorans CGD2]
 gi|221176816|gb|EEE09244.1| phage repressor [Burkholderia multivorans CGD2]
 gi|221182762|gb|EEE15162.1| phage repressor [Burkholderia multivorans CGD2M]
          Length = 230

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 28/220 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I  +          LA  AG+   + ++      +G+ +    E    I         
Sbjct: 14  DRIRAVLSETQAEQVELAEAAGVTKGTVSQWL----DGKIKSIKLEYAVGIQKRYGYNPV 69

Query: 71  Q---------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                     +    +++    +   + +PL+    +G         FP G  +  +   
Sbjct: 70  WLVMGEGEKKMGTPGYANVAPAQVGSRRVPLISSVQAGRMTEAVD-PFPPGGAFEYL--- 125

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                      +       + +  SM P +  GD +I++ AIQ   GD ++ K    +  
Sbjct: 126 ------LTDLDLSDYAFALEIEGLSMAPDFNPGDRIIIDPAIQPRPGDFVVAKNGREEAT 179

Query: 182 AKVLISRRGR-----SIDLMSLNCCYPVDTVEMSDIEWIA 216
            K   +R        + +L+ LN  YP  + E   +  I 
Sbjct: 180 FKKYRARGVGADGREAFELIPLNPDYPTISSEHEQVRIIG 219


>gi|85058914|ref|YP_454616.1| hypothetical protein SG0936 [Sodalis glossinidius str. 'morsitans']
 gi|84779434|dbj|BAE74211.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
          Length = 239

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 24/233 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             +  +AI        L+ +  A K G   ++ ++      +   R    +   KI    
Sbjct: 12  RDQQLKAIKA-----GLSKADFAEKCGTSASTISQIL---GDKAGRNLGDDLARKIEKNL 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG---------SGGFFDSGVFPTGNKWN 116
                 L        + +E  E +I     P               F        G+   
Sbjct: 64  GLKHGWLDLQHHETQKNSEVHEAQIIGGIIPWDSKTSLYGDEVEVPFLKEVKISAGSGSL 123

Query: 117 TVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                    +   +S    +          +    SM P+   G  + ++   ++    +
Sbjct: 124 FQEDHNGYKLRFAKSTLRRLNVQPENAVCVEVIGNSMEPVLPDGSTVGVDLGNKIIKDGK 183

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
           +        +  KVL       I + S N   Y  +  + +++  I ++ W+S
Sbjct: 184 MYAIDYGDFLRVKVLYLMPKGKIRIRSYNQDEYDDEECDATEVTVIGKVFWSS 236


>gi|254490244|ref|ZP_05103434.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|254490560|ref|ZP_05103746.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|254490688|ref|ZP_05103873.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|254490854|ref|ZP_05104037.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|254490891|ref|ZP_05104074.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|254490935|ref|ZP_05104117.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|254491345|ref|ZP_05104525.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|254491994|ref|ZP_05105172.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|254492163|ref|ZP_05105338.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|254492671|ref|ZP_05105842.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|224462192|gb|EEF78470.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
 gi|224462715|gb|EEF78989.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
 gi|224462809|gb|EEF79080.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
 gi|224463474|gb|EEF79743.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
 gi|224463844|gb|EEF80111.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
 gi|224464026|gb|EEF80292.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
 gi|224464063|gb|EEF80329.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
 gi|224464144|gb|EEF80408.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
 gi|224464304|gb|EEF80567.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
 gi|224464591|gb|EEF80850.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
          Length = 272

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 70/267 (26%), Gaps = 59/267 (22%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA---- 64
           I   I    +R  LT   +A   G+   S  K ++       R P    + KIL      
Sbjct: 7   IGGRILEERKRLRLTQQDVADFVGITRQSQAKYEKGE-----RSPDAIYLEKILGLGFNS 61

Query: 65  ----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFP------------------------ 96
               T             D  ++           +                         
Sbjct: 62  YYVLTGNETFPTRSHLDVDDNSSSTHRNSNESETYEKRDRKSKVGQVDPTSNEEVGSSIK 121

Query: 97  ----------PSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIY----AIQTQDTR 139
                      + +           GN +          +      IY    +       
Sbjct: 122 DYSAGTGSIMETFAHIPLFDVKASAGNGYVIHEEEETDALIFKKEWIYNELHSSPANLYL 181

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
              +  SM P  R GD+++++    V   D + +      ++ K L     + + + S N
Sbjct: 182 IYVEGESMEPALRPGDVILVDHTDNVAKRDGIYVIRMGESLLVKRLQRLPSQRLKVTSDN 241

Query: 200 CCYPVDTVEMS-----DIEWIARILWA 221
             Y    + +      ++  I R++W+
Sbjct: 242 PAYEPFEISLDFDLQNELSIIGRVVWS 268


>gi|183599591|ref|ZP_02961084.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827]
 gi|188021839|gb|EDU59879.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827]
          Length = 207

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 19/210 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I +  +  NLT + LA KAG+   S    +    + + R  +   I K L    ++
Sbjct: 3   LASRIRQRRQELNLTQTELAEKAGISQQSIESIENGRTK-KPR--NIIEIAKAL----QS 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             + L    S    +E   + IPLL +  +G     +      GN +  + V +  S   
Sbjct: 56  HPEWLLNGKSIMPISEVNSRRIPLLSYVQAGLFKDANPITDYEGN-FEYILVDDDIS--- 111

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS- 187
                       + +  SM P +++GDI+++++ I  N G+ +  K        K     
Sbjct: 112 ------ANAFALRVEGDSMTPEFKEGDIVVIDTEIWPNPGEFVFAKNGGNQGTFKKYRPT 165

Query: 188 -RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                  +L+ LN  YP        I  I 
Sbjct: 166 GIGTGEFELVPLNPDYPTLNSHDYQISLIG 195


>gi|32266247|ref|NP_860279.1| hypothetical protein HH0748 [Helicobacter hepaticus ATCC 51449]
 gi|32262297|gb|AAP77345.1| hypothetical protein HH_0748 [Helicobacter hepaticus ATCC 51449]
          Length = 228

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 64/226 (28%), Gaps = 21/226 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  +   H +T    A + G+   +    +        R+     +  I       
Sbjct: 2   IGSKLVALRNEHQMTQKDFAERTGISYGTLQAYEYGTQS--PRYDYLTKVSDIFNVPMIF 59

Query: 69  ICQLLDLPFSDGRTT--------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                    +             + ++ +  +   P +     +D  V   G+       
Sbjct: 60  FLDDDTSLGNSYTNPKGFVSDSLDVRKSDSLVSNNPSTIQIPIYDDVVASAGSGAINDEY 119

Query: 121 PEIRSPHNGIY-------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
           P      +  +       +     +    +  SM P   +   L++  ++    G   ++
Sbjct: 120 PTQSVGIDKGFLRTHFGLSSFLGLSIITAKGDSMSPTIPENCQLLVQKSV-PKEGQICVV 178

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +    ++  K L         L+S N  Y    +E  + + +  ++
Sbjct: 179 RID-DELYVKRLQKLP--KYRLISDNKSYENIELEGREYDIVGVVV 221


>gi|284008333|emb|CBA74709.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 230

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 16/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H++I +A  R+A++  +T + LA K  + P S  + +      +NR      +  
Sbjct: 1   MKTM-HERIKQA--RLAKK--MTQAELAEKLSVTPQSVQQWETSTEPKKNRLMKIADVLD 55

Query: 61  ILAA---TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           I        E   +   L          +  E   L         F+ S     G+  N 
Sbjct: 56  INVNWLLFGEKKNKDGRLKNKMNFREISEWDESTPLEDDEV-EIPFYKSIELAAGSGCNE 114

Query: 118 ------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
                   +   RS                    SM P+   G  + +N          +
Sbjct: 115 NKDYNGFKLRYSRSTLRRYGIPSKSVYAFTVHGNSMEPVIPNGATVFVNCCDNSIVDGGI 174

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
               +      K+L+ + G+ + + S N   YP +  ++  ++ I R+  AS
Sbjct: 175 YFIEQDDLFRIKILLRQPGKKVIIRSFNSIEYPDEIADLDTVKVIGRVFNAS 226


>gi|259418887|ref|ZP_05742804.1| LexA repressor [Silicibacter sp. TrichCH4B]
 gi|259345109|gb|EEW56963.1| LexA repressor [Silicibacter sp. TrichCH4B]
          Length = 232

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 72/229 (31%), Gaps = 13/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +    ++ E I +  ++  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLQLLEFIHKRLQKDGVPPSFDEMKTALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + ++  +             + G+     + E+  +    +G+      G    G
Sbjct: 61  ARAIEVIRLPDSLGGNPDSFQPKVIAGGKDQNAPKAELKPV--ADNGATELAVMGRIAAG 118

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                +              +   Q    + +  SM+      GD++++      + GD 
Sbjct: 119 VPIEAISQASAHVAVPNAMLSSAGQHYALEVRGDSMIDAGINDGDVVVIRETDAADNGDI 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    + GR I+L + N  YP  +     ++   R++
Sbjct: 179 VVALVEGHEATLKRFERK-GRMIELHAANPAYPTRSYSEDQVKVQGRLV 226


>gi|47605801|sp|P61613|LEXA_RHOCA RecName: Full=LexA repressor
 gi|33340117|gb|AAQ14546.1|AF308861_1 LexA [Rhodobacter capsulatus]
          Length = 238

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 23/236 (9%)

Query: 3   SFSHKKI--WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----- 55
             +HK++   + I +   R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTHKQLELLDFIQKRMARDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRMAHR 60

Query: 56  ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                     ES+ +   A      Q    P     +  +  +         + +     
Sbjct: 61  ARALEIVKLPESMERAAEAERGLQTQPAFTPMLIAGSRTEPPRGALP---VAAAALDIPM 117

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
            G    G     +          G   + + +    + +  SM+      GDI+++ S  
Sbjct: 118 MGRIAAGVPIEAIAEVAHHVTVPGAMLSGRGEHYALEVKGDSMIQAGINDGDIVVIRSQP 177

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               GD ++      +   K    R G  I L + N  Y    +    ++   R++
Sbjct: 178 TAENGDIVVALVEDLEATLKRYYRR-GGMIALEAANPAYETRLLREDQVKVQGRLV 232


>gi|262277265|ref|ZP_06055058.1| repressor LexA [alpha proteobacterium HIMB114]
 gi|262224368|gb|EEY74827.1| repressor LexA [alpha proteobacterium HIMB114]
          Length = 226

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 61/228 (26%), Gaps = 17/228 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--------W 52
           M +   K +   I+   +   ++PS    +  L+  S +   R       R         
Sbjct: 1   MLTKKQKNLLIYINEKLKNDGVSPSYDEMRQSLNLKSKSGIHRLISALEERGFVKRLAHK 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+              P         K K+     + P          +    
Sbjct: 61  ARALEVVKLPENAGVKDLYNNFTPSVISG-GLDKIKKEKEKKYIPVVGKIAAGLPIEAIE 119

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171
           +    +  P   S  N  +         K +  SM+      GD +I+        G  +
Sbjct: 120 DSSENIPYPPNLSDKNDEF------YGLKVEGDSMINAGINDGDTVIIKKTNTAENGKIV 173

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K L  +   SI L S N  Y         ++    ++
Sbjct: 174 VALIDDHEATLKRLRKKTN-SIALESANPAYETRIFNPERVKIQGILV 220


>gi|312134838|ref|YP_004002176.1| XRE family transcriptional regulator [Caldicellulosiruptor
           owensensis OL]
 gi|311774889|gb|ADQ04376.1| transcriptional regulator, XRE family [Caldicellulosiruptor
           owensensis OL]
          Length = 230

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 11/205 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I  + E+  L    +A+K  +   + +  +        R PS E + K     N +   
Sbjct: 17  RIRELREKQGLQQKDVAKKLNISNQALSNYELG-----KRMPSLEMVKKFADFFNVSTDY 71

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-----PTGNKWNTVGVPEIRSP 126
           L+ L  S     +    +  L   P     G               +             
Sbjct: 72  LMGLTNSPNPNQDDDVVKKFLENNPDVRPVGKMIPIPIIGTVRAGSDGSLACEEYLGSEL 131

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                    +    + +  SM P   +GD++++     V  G+  ++     + V K +I
Sbjct: 132 VEVDTVKDGEYFFLRVKGDSMYPEIFEGDLVLVRKQPDVESGELAVVIVNGDEGVVKKVI 191

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD 211
            +   +I L S+N  Y    +    
Sbjct: 192 KKEN-AIILQSVNPKYEPIVITEGQ 215


>gi|114764299|ref|ZP_01443527.1| LexA repressor [Pelagibaca bermudensis HTCC2601]
 gi|114543247|gb|EAU46264.1| LexA repressor [Roseovarius sp. HTCC2601]
          Length = 231

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + + I++  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLDFINKRLQRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +                R   +  K  P+     + +      G    G
Sbjct: 61  ARAIEIVKLPESLGGKPAGFTPQVIDGDRPDSRPAKAQPV---SNAEALELPLLGRIAAG 117

Query: 113 NKWNTV-GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
               ++   P   +    + +        + +  SM       GD++I+      + GD 
Sbjct: 118 EPIQSIADNPPNIAVPGAMLSSNAHHYALEVKGDSMIEAGIHDGDVVIIRETSSASNGDI 177

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++ +    +   K    + G +I L + N  Y    + +  ++   R++
Sbjct: 178 VVAQIEGYEATLKRFRRQ-GDTIVLEAENAAYEPRVLPLGAVKVQGRLV 225


>gi|156933191|ref|YP_001437107.1| hypothetical protein ESA_01002 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531445|gb|ABU76271.1| hypothetical protein ESA_01002 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 19/228 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + +  E+  L+   LA + GL   S  K +    E     P       +       
Sbjct: 4   LAERLKKAREKAGLSQLQLAEQVGLTQQSIAKIENGVTE----QPRKIKQLALALGVTAN 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-------GVP 121
             Q  D+  +   +    ++       P   +           GN              P
Sbjct: 60  WLQYGDIDANGSYSEMIVKEWESTSADPDLFTEIPILDIELSAGNGCEAEIVESELSTYP 119

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179
             R          +         +S+ P+   GD + ++      +  GD L        
Sbjct: 120 LRRDELRRAGVSASSARIVNILGSSLYPVLTNGDKVAVDLSQTSPIRDGD-LYALRDGVL 178

Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222
           +  K+LI+R    + L S N   YP + +   +    I  I R+ W+S
Sbjct: 179 LRVKILINRPDGGLILRSFNKDEYPDEVLTYEEKLARIHVIGRVFWSS 226


>gi|260567943|ref|ZP_05838412.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|260154608|gb|EEW89689.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 132

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/141 (39%), Positives = 75/141 (53%), Gaps = 9/141 (6%)

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
              +   IPLL    +G+GG+FD   FP G  W+ V  P                   + 
Sbjct: 1   MYARPAPIPLLGMAEAGAGGYFDDAGFPAGQGWDIVEFPARTGEG---------VYALEV 51

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SMLPLYR GD LI+     V  GDR++++ R G+++AK+L  +  R+I+L SLN  +
Sbjct: 52  SGESMLPLYRDGDTLIVAPNAAVRRGDRVVVRTRDGEVMAKILHRQTPRTIELHSLNPEH 111

Query: 203 PVDTVEMSDIEWIARILWASQ 223
           P    E  DIEWIARILWASQ
Sbjct: 112 PNRIFESKDIEWIARILWASQ 132


>gi|294677883|ref|YP_003578498.1| LexA repressor [Rhodobacter capsulatus SB 1003]
 gi|294476703|gb|ADE86091.1| LexA repressor [Rhodobacter capsulatus SB 1003]
          Length = 238

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 23/236 (9%)

Query: 3   SFSHKKI--WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----- 55
             +HK++   + I +   R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTHKQLELLDFIQKRMARDGVPPSFDEMKDALDLRSKSGIHRLITALEARGFIRRMAHR 60

Query: 56  ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                     ES+ +   A      Q    P     +  +  +         + +     
Sbjct: 61  ARALEIVKLPESMERAAEAERGLQTQPAFTPTLIAGSRTEPPRGALP---VAAAALDIPM 117

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
            G    G     +          G   + + +    + +  SM+      GDI+++ S  
Sbjct: 118 MGRIAAGVPIEAIAEVAHHVTVPGAMLSGRGEHYALEVKGDSMIQAGINDGDIVVIRSQP 177

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               GD ++      +   K    R G  I L + N  Y    +    ++   R++
Sbjct: 178 TAENGDIVVALVEDLEATLKRYYRR-GGMIALEAANPAYETRLLREDQVKVQGRLV 232


>gi|167746119|ref|ZP_02418246.1| hypothetical protein ANACAC_00815 [Anaerostipes caccae DSM 14662]
 gi|167654634|gb|EDR98763.1| hypothetical protein ANACAC_00815 [Anaerostipes caccae DSM 14662]
          Length = 209

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 54/224 (24%), Gaps = 28/224 (12%)

Query: 1   MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M    +K I    I      +  T + +    G+  T+F    +       R    E + 
Sbjct: 1   MGGLGNKDIMANNIKYYMNLNGKTRNEMCEALGVKYTTFTDWVKGNT--YPRIDKIELMA 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                    + +   +                                    G   + V 
Sbjct: 59  NYFGIEKSDLVEQRSVNRKHNAVEINVLGR-------------------VAAGIPIDAVE 99

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                       A        +    SM P + +GD++I+         D ++      +
Sbjct: 100 EIIDTEEITEDMAKTGTFFGLQIHGNSMEPKFSEGDVVIVRQQDDAETDDIVIAIVNGDE 159

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARI 218
              K L       I L+S N  Y        +     ++ I  +
Sbjct: 160 ATCKKLKKYNDG-IVLISTNPAYEPMYFSNKEIMDKPVKIIGVV 202


>gi|256024105|ref|ZP_05437970.1| Repressor protein C2 [Escherichia sp. 4_1_40B]
          Length = 208

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 24/218 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + + I  +      +   L +  G+   +    ++         P  E++ K+    N
Sbjct: 2   ETVGQRIKALRRVTGTSQKELGKFCGVSDVAVGYWEKDINT-----PGGEALSKLAKFFN 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +    +              + +P++ +  +G      +               E+   
Sbjct: 57  TS-IDYILYGAEFEGKLVTNMRRVPVISWVQAGQFTECRAAEV----------FSEVDKW 105

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDI 180
            +    I       + +  SM     LP   +G  +I++   +   G  ++ +   T + 
Sbjct: 106 VDTSLKIGDNSFALEVKGDSMTNPNGLPTIPEGATVIVDPDAEPRHGKIVIARLDGTNEA 165

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K L+    +   L+ LN  YP   +  + +  I  +
Sbjct: 166 TVKKLVIDGPQKF-LVPLNPRYPNIPINGNCL-IIGVV 201


>gi|197285395|ref|YP_002151267.1| regulatory protein [Proteus mirabilis HI4320]
 gi|227355829|ref|ZP_03840222.1| repressor of rdgA and rdgB [Proteus mirabilis ATCC 29906]
 gi|194682882|emb|CAR43223.1| regulatory protein [Proteus mirabilis HI4320]
 gi|227164148|gb|EEI49045.1| repressor of rdgA and rdgB [Proteus mirabilis ATCC 29906]
          Length = 230

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 16/227 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I +          LT S LA  AG    S  + +    +   R      + K L      
Sbjct: 3   IAKRTKDKRIALGLTQSELATLAGTTQQSIEQLESGKTK---RPRFLPELAKALNCELSW 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKWNTVG--- 119
           + +  +          + E      +              +F S     G+   T     
Sbjct: 60  LLEGDNKQTHASEIPPQDEWHSVSEWDNDTPLNADEVEIRYFKSIELAAGDGCCTNEDHN 119

Query: 120 ---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
              +   +S      A             SM P+   G  + +++         +    +
Sbjct: 120 GYKLRFSKSTLRRYGASPQNVICFSVYGDSMSPVIPNGSTVTVDTGNTRIVDGGIYAIEQ 179

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
                 K+L  + G  + + S N   +P +  E+  ++ + R++  S
Sbjct: 180 DSLFRIKLLYRQPGGKLIIRSYNKDEFPDEFAEIDSVKIMGRVIHWS 226


>gi|56697019|ref|YP_167381.1| LexA repressor [Ruegeria pomeroyi DSS-3]
 gi|71648704|sp|Q5LRH4|LEXA_SILPO RecName: Full=LexA repressor
 gi|56678756|gb|AAV95422.1| LexA repressor [Ruegeria pomeroyi DSS-3]
          Length = 231

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 12/228 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +   + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRLQADGVPPSFDEMKLALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +              DG   ++            +        G    G
Sbjct: 61  ARAIEIVKLPESLGGEPTVGFQPRVIDGDRPDRPRPANAEPVTIHAVELPVM--GRIAAG 118

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171
                +     +    G    + +    + +  SM       GD++++      + GD +
Sbjct: 119 VPIEAISQVSHQVAVPGSMVGKGEHYALEVKGDSMIEAGINDGDVVVIRETSTADNGDIV 178

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K    R   SI L + N  Y    +    +    R++
Sbjct: 179 VALVDDSEATLKRFFRRGA-SIALEAANPAYETRVLPSDRVRVQGRLV 225


>gi|117926204|ref|YP_866821.1| phage repressor [Magnetococcus sp. MC-1]
 gi|117609960|gb|ABK45415.1| putative phage repressor [Magnetococcus sp. MC-1]
          Length = 264

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 65/245 (26%), Gaps = 27/245 (11%)

Query: 3   SFSHKK----------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
           + +H +          +   +        L+   LA KAG+     +K +    EG  + 
Sbjct: 17  TLTHPQNSDTLLLMDTLGHRLKDARLALGLSQKKLADKAGVSQGLIHKLETGFYEGTGQI 76

Query: 53  PSTESIFKIL-------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                   +                        +   +                +     
Sbjct: 77  VPIAGALDVRPEWLHSGEQPRRWGNPQYKDLRENSSHSSADGSAHSGHTTSEGYALIPIY 136

Query: 106 SGVFPTGNKWNTV------GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
           S     G     +       +    S  +       +    + Q  SM P +  GD+L+L
Sbjct: 137 SVHASAGLGEEVIQEDVLDHLAFQTSWLSQKGLDPCKLGVIQAQGDSMYPTFDDGDVLLL 196

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIA 216
           +   +     ++ +      +  K L       I ++S N  Y    V   + E    + 
Sbjct: 197 DMGQREVVDGKVFVLRSEEYLYVKRLQILP-GRILIVSDNPKYQSVQVTREERELWKIVG 255

Query: 217 RILWA 221
           R++W 
Sbjct: 256 RVVWV 260


>gi|218296125|ref|ZP_03496894.1| peptidase S24 and S26 domain protein [Thermus aquaticus Y51MC23]
 gi|218243502|gb|EED10031.1| peptidase S24 and S26 domain protein [Thermus aquaticus Y51MC23]
          Length = 220

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 11/210 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP---STESIFKI 61
           + +K   AI R      L+   L  + G      ++      +   R+      E++ ++
Sbjct: 6   TDEKAGLAIRRRMRELGLSQKELGARVGKSQAWVSQELLRTPKQVIRYLWARDPEAVQRL 65

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L     T  +           +E       + Y  P    G         G ++ T+ +P
Sbjct: 66  LHVLQWTPEEFSRETGIHIPGSEIPGAIPVVRYRIPVIDAGAGPPMWN-EGAEYITLHIP 124

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E+R         + +    + +  SM P  R GDI++  +      G  + +      ++
Sbjct: 125 ELRGKR------EEELFAVRVKGDSMEPTLRDGDIVVFWTGGAPEPGRIVAVHVHWDGVI 178

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L      S  L S N  +P   +  +D
Sbjct: 179 VKRLQRY-NGSWYLYSDNPDHPPVPLTEND 207


>gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum
           thermopropionicum SI]
 gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum
           thermopropionicum SI]
          Length = 224

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 26/222 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI   I +  E   LT + L  K G+  T+ N  ++       R    + ++++  A  +
Sbjct: 4   KIGARIKKAREEKYLTQAELGVKLGVSATAINYYEKG-----KRKIGIDDLYRMANALGK 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTV 118
            +   L          +K+                   P          ++   N    +
Sbjct: 59  PLEYFLGRDVGSVGRGDKQPSGSNRENINNTFNDMTGIPVLGTVSAGELLYSEQNISGYL 118

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV-NCGDRLLIKPR 176
             P   +          +    + +  SM       GD++++     V   G  +     
Sbjct: 119 PFPRKMA--------DGKYFALRVKGDSMTGEGIYDGDLVLIRRQSHVDFNGQIVCALVN 170

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE--MSDIEWIA 216
             +   K+ +     +I L + N  YP   ++     +    
Sbjct: 171 GEENTLKIFLQDENGNILLKAANPAYPDIVLQHGKDALVIQG 212


>gi|148557717|ref|YP_001265299.1| putative phage repressor [Sphingomonas wittichii RW1]
 gi|148502907|gb|ABQ71161.1| putative phage repressor [Sphingomonas wittichii RW1]
          Length = 216

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 67/215 (31%), Gaps = 7/215 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +  A+D +        S ++R  G +P    +  +    G  R  S E   ++ A   
Sbjct: 3   DDVRSALDALIRERGEDYSAISRLLGRNPAYIQQFIKR---GSPRKLSEEDRLRLAAYFR 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L                 +  +    +        G+     +   +   +    
Sbjct: 60  VPETRLGGRADGGPAGDMALAAALVTVPRI-AIGASAGPGGIAEIEERDRPIAFDDGLLR 118

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             G    +   +  +    SM P    GD ++++          + +      ++ K L+
Sbjct: 119 DLGAGR-RAALSIIRVAGESMEPTLHDGDDILVDRDASEIRPGGIYVLRLDDLLMVKRLL 177

Query: 187 SRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILW 220
               R + + S N  +P     + + ++ I R+LW
Sbjct: 178 RD-DRGLVVHSDNPAHPEIAGFDPATLQVIGRVLW 211


>gi|117926057|ref|YP_866674.1| phage repressor [Magnetococcus sp. MC-1]
 gi|117609813|gb|ABK45268.1| putative phage repressor [Magnetococcus sp. MC-1]
          Length = 264

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 66/245 (26%), Gaps = 27/245 (11%)

Query: 3   SFSHKK----------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
           + +H +          +   +        L+   LA KAG+     +K +    EG  + 
Sbjct: 17  TLTHPQNSGTLLLMDTLGHRLKDARLALGLSQKKLADKAGVSQGLIHKLETGFYEGTGQI 76

Query: 53  PSTESIFKIL-------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                   +                        +   +                +     
Sbjct: 77  VPIAGALDVRPEWLHSGEQPRRWGNPQYKDLRENSSHSSADGSAPSGHTTSEGYALIPIY 136

Query: 106 SGVFPTGNKWNTV------GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
           S     G     +       +    S  +       +    +TQ  SM P +  GD+L+L
Sbjct: 137 SVHASAGLGEEVIQEDVLDHLAFQTSWLSQKGLDPCKLGVIQTQGDSMYPTFDDGDVLLL 196

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIA 216
           +   +     ++ +      +  K L       I ++S N  Y    V   + E    + 
Sbjct: 197 DMGQREVVDGKVFVLRSEEYLYVKRLQILP-GRILIVSDNPKYQSVQVTREERELWKIVG 255

Query: 217 RILWA 221
           R++W 
Sbjct: 256 RVVWV 260


>gi|273810436|ref|YP_003344907.1| CI phage repressor [Xylella phage Xfas53]
 gi|257097811|gb|ACV41117.1| CI phage repressor [Xylella phage Xfas53]
          Length = 336

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 67/222 (30%), Gaps = 15/222 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I  + +   ++ S +A    +   + +  KR G   +  + +  +  K+         
Sbjct: 107 RFIAALGKNREVSQSAIATLCNVSEQAVSGWKRTGRIDKKHFAALSTALKV--PLEYWYG 164

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVG----VPEI 123
           +              +  +      P +G            G        V     +P  
Sbjct: 165 EAYGAERVGIDVRRIRAVDGEEGTDPETGVMIPVYDLEVSGGPGCTVPEYVETRYKLPFQ 224

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            +      A        K + +SM  +   GD +++++       D +      G+   K
Sbjct: 225 INWLRTWDAKPNDILIAKVRGSSMEDVLYDGDKVVIHTKRTRIRNDAVYALVYGGEARIK 284

Query: 184 VLISRRGRSIDLMSLNCC---YPVDTVEMS---DIEWIARIL 219
            L      S+ ++S N     +P + V+      +  I +++
Sbjct: 285 RLFVMADGSLRIVSHNPDKGRFPDEVVQPDNLEQVSIIGQVI 326


>gi|195953192|ref|YP_002121482.1| putative phage repressor [Hydrogenobaculum sp. Y04AAS1]
 gi|195932804|gb|ACG57504.1| putative phage repressor [Hydrogenobaculum sp. Y04AAS1]
          Length = 205

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 20/213 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +  + E   ++   LA+  G D  SF +       G+   P  E +  I  A   
Sbjct: 2   NIGQRLKYIRESKGISRRELAKMMGKDEVSFEQYLYKLESGKILNPGIELVESISKALGI 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +   LL+     G           +   P         + ++     +    +P      
Sbjct: 62  SPKDLLEKQEEHGDIE-------TVFAIPIVDVKAGAGNPLYAEEYIYVNDIIPSRYLS- 113

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLI 186
                        K +  SM P+ + G+ +I++++   +  G   +I  + G ++ + + 
Sbjct: 114 -----------AIKIKGDSMEPIIKDGEYVIIDTSSKDIINGKIYVISDKDGGLLVRRIY 162

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                   L+  N  Y    V+ SDI  I + +
Sbjct: 163 KLNDGFFRLLPENEAYKSQDVKASDIRIIGKAI 195


>gi|170744745|ref|YP_001773400.1| LexA repressor [Methylobacterium sp. 4-46]
 gi|229621226|sp|B0UGH4|LEXA_METS4 RecName: Full=LexA repressor
 gi|168199019|gb|ACA20966.1| transcriptional repressor, LexA family [Methylobacterium sp. 4-46]
          Length = 239

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 16/234 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +     +   I +      + PS    K  LD  S +   R       R      P+ 
Sbjct: 1   MLTRKQLDLLRFIQQRMRETGVPPSFDEMKDALDLKSKSGIHRLITALEERGFLRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDG---------RTTEKKEKEIPLLYFPPSGSGGFFDS 106
               +++           ++                 +       L+      +      
Sbjct: 61  ARAIEVIRIPEAVASGPAEVVRFTPSVVEGGRSSAPVKPAPLPTALVSDESGHAVSIPVM 120

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165
           G    G   + +         +  +    +    + +  SM       GD++++      
Sbjct: 121 GRIAAGTPISAIQSQSRSVAMSPDFLAGGEHYALEVRGDSMIEAGILDGDLVVIRRQDTA 180

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           N GD ++      +   K L  R G SI L + N  Y    +    +    R++
Sbjct: 181 NTGDIVVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGRLV 233


>gi|240948773|ref|ZP_04753145.1| phage repressor [Actinobacillus minor NM305]
 gi|240296989|gb|EER47567.1| phage repressor [Actinobacillus minor NM305]
          Length = 218

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 76/224 (33%), Gaps = 23/224 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S++ + + I    +   LT   LA    G+   + ++ +    +     P+ E+I  + 
Sbjct: 1   MSNQTLGDRIRNRRKELKLTQKDLATALKGVSHVAISQWESNTTK-----PNAENILDLS 55

Query: 63  AATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                 I  L      S+         +IPL+ +  +G     D      G+ +  +   
Sbjct: 56  TVLQCEISWLLRGNGESNVVPASIGMTKIPLISYIQAGQWTGIDDFRETCGD-YEYI--- 111

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                      +       + +  SM P + +GD++I++     + G+ +       +  
Sbjct: 112 ------LTDLDVSDDAFALEIKGDSMTPDFLEGDVVIIDPNEPPHAGEFVAAINGNYEAT 165

Query: 182 AKVLISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K                +L++LN  YP  +    +I  I  ++
Sbjct: 166 FKKYRPLGEVDNFGREHFELIALNPDYPKLSTLKQEIRIIGTMV 209


>gi|215479977|ref|YP_002332426.1| c repressor [Pseudomonas phage MP29]
 gi|169409241|gb|ACA57646.1| c repressor [Pseudomonas phage MP29]
          Length = 240

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 22/230 (9%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            +F+ + +   I  +A     +   LA++ G+  T   +  +            E +  I
Sbjct: 20  PTFTQE-VGTRIAEVARLLG-SRRALAKQVGIHETQLYRYIKGINAAAP-----ELLSAI 72

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---- 117
             A   ++  L++         E  +                   G    G+   T    
Sbjct: 73  AKAGRVSLDWLINGEEVAATPAEGAKS------IEGEYVYIPLYDGQVSAGHGSWTDGAT 126

Query: 118 --VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
             V +   R          +  +  +    SM PL   GD ++++          + +  
Sbjct: 127 VLVNLAFTRYSLRKKGLDPSSISAIRIGGDSMEPLLCDGDTVLVDHTKSTVQDAAVYVVR 186

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWAS 222
               + AK L  R   S+ ++S N  Y    V    +SD+E I R++WAS
Sbjct: 187 LDDHLYAKRLQRRFDGSVSIISENKAYTEMIVPKAKLSDLEIIGRVVWAS 236


>gi|319775381|ref|YP_004137869.1| hypothetical protein HICON_07210 [Haemophilus influenzae F3047]
 gi|329122603|ref|ZP_08251182.1| XRE family transcriptional regulator [Haemophilus aegyptius ATCC
           11116]
 gi|317449972|emb|CBY86184.1| Putative uncharacterized protein [Haemophilus influenzae F3047]
 gi|327472617|gb|EGF18046.1| XRE family transcriptional regulator [Haemophilus aegyptius ATCC
           11116]
          Length = 229

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 26/232 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+  S       +  + E   L+ +  ++  G+   + +      + G+ R P   +I +
Sbjct: 1   MSDLS-----TRLKTLLEEKGLSMNAFSKMVGVSQPAISDI----VSGKTRSPK--NIVE 49

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVG 119
           I  A    +  L +          +                            +      
Sbjct: 50  IATALGVDVNWLKNGEGD--SEIGRITAYCHSEKDNEHTLRVDLLDVNLAAYSSGIINAE 107

Query: 120 VPEIRSP----HNGIYAIQTQD-----TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            P I S       G   I  +         +    SM+P  ++ DI+ +++ I+   G+ 
Sbjct: 108 YPNIVSSLYFTEEGANRILGRTTTNGVYMFRVPTDSMVPTIKQTDIVFIDTNIKHYIGEG 167

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219
           +      G+   K L       I  +S N  Y    +          I + +
Sbjct: 168 IYAFSLNGEEYIKRLQRLPTGVIRALSDNKHYEPFDITEELFDSAVIIGKFI 219


>gi|161345277|gb|ABX64473.1| putative phage repressor [Pseudomonas syringae]
          Length = 238

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 64/229 (27%), Gaps = 20/229 (8%)

Query: 11  EAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +      L+    A + GLD +  ++      +   +  +T    KI       +
Sbjct: 6   QRISALRAAMAGLSQKDFANQHGLDASYLSQLLNGHRKLGEKAAATLE-EKINLHPGSLV 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L                +       S                   V           
Sbjct: 65  NPELLSGSDTAEIIVPAVAPVDSRTVMQSLGFITIPHLDVAASMGSGNVPPDSQIEVIKD 124

Query: 130 -------------IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                         ++             SM   +R GD L+++  I     D + +   
Sbjct: 125 ITVHLDWLKTQGLAFSRIENLAIITGDGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTL 184

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI--LW 220
            GD+  K L    G ++ ++S N  YP   +E +D   +   AR+  +W
Sbjct: 185 DGDLYIKRLQRMTGGALRMISDNPLYPAIIIEGADLTKVHIQARVLLVW 233


>gi|145631924|ref|ZP_01787679.1| hypothetical protein CGSHi22421_00742 [Haemophilus influenzae
           R3021]
 gi|260582515|ref|ZP_05850306.1| transcriptional activator-regulatory protein [Haemophilus
           influenzae NT127]
 gi|144982429|gb|EDJ89999.1| hypothetical protein CGSHi22421_00742 [Haemophilus influenzae
           R3021]
 gi|260094495|gb|EEW78392.1| transcriptional activator-regulatory protein [Haemophilus
           influenzae NT127]
          Length = 231

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 26/233 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+  S       +  + E   L+ +  ++  G+   + +      + G+ R P   +I +
Sbjct: 1   MSDLS-----TRLKTLLEEKGLSMNAFSKMVGVSQPAISDI----VSGKTRSPK--NIVE 49

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVG 119
           I  A    +  L                 +             +       G+       
Sbjct: 50  IATALGVDVNWLKTGEGEPIAQGSLISSLVSTDSDEHHRFRVDYLDVQAAAGHSGIENAD 109

Query: 120 VPEIRSPHNGIY---------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            PE+                 +     +       SM+P   KGDI+ +++ +    G+ 
Sbjct: 110 YPEVIQSIYFSKEGLLEIVGKSTNDGISLINVPTDSMVPTINKGDIVFVDTKVNYYTGEG 169

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI----EWIARIL 219
           +      G    K L+         +S N  YP   +   ++      I + +
Sbjct: 170 VYFFLLNGGAYIKRLMKLPTGVYRAISDNSVYPDFDIS-DELFDTAVIIGKFI 221


>gi|260845233|ref|YP_003223011.1| putative phage repressor [Escherichia coli O103:H2 str. 12009]
 gi|257760380|dbj|BAI31877.1| predicted phage repressor [Escherichia coli O103:H2 str. 12009]
 gi|309702933|emb|CBJ02264.1| putative phage protein [Escherichia coli ETEC H10407]
          Length = 224

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 24/224 (10%)

Query: 5   SHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   + + I  + ++  ++  + LAR+  L+  + ++     + G  + P   ++ +I  
Sbjct: 4   TTDILSQNIKYLMDKAKISSITELARRLQLNQPTLHRL----VSGEVKDPKYATLKQIAD 59

Query: 64  ATNETICQLLDLPFSDGRTTEK---------KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             + +   L +    +    +          +  ++P+L     G GG +    +  G+ 
Sbjct: 60  YFHVSPIDLAERSLQEMEKEDATGIKTYISLRFNKVPVLGNTQLGVGGLWSDTQYSVGSS 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
              +  P                   K    SM+P  ++G+ +I+        GD +L+ 
Sbjct: 120 DGFIYWPTK----------DEDAYALKCVGDSMMPRIKEGEFVIVEPNHDYTPGDEVLVV 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            R G+++ K  +  R     LMS+N  +P   V   +IE I  +
Sbjct: 170 TREGEVMVKTFLFERDGLFHLMSVNEDHPPVRVPRENIEKIHYV 213


>gi|84503087|ref|ZP_01001183.1| LexA repressor [Oceanicola batsensis HTCC2597]
 gi|84388631|gb|EAQ01503.1| LexA repressor [Oceanicola batsensis HTCC2597]
          Length = 233

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +        +      G                 + +      G    G
Sbjct: 61  ARAIEIVKLPDSLGGDGGGFVPRVIDGGAGPADPPLGDTRP-VEAAHALELPVMGRIAAG 119

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                +          G   + + +    + +  SM+      GD++++      + GD 
Sbjct: 120 VPIEAINQVSHHVAVPGSMLSGRGEHFALEVRGDSMIDAGINDGDVVVVRETGSADNGDI 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    R G+ I+L++ N  Y    +  + ++   R++
Sbjct: 180 VVALVDEQEATLKRFFRRSGQ-IELVAANPAYETRVLPDNRVKVQGRLV 227


>gi|33341104|gb|AAQ15118.1| LexA [Paracoccus denitrificans]
          Length = 233

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 63/234 (26%), Gaps = 22/234 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE---- 56
           M +    ++ E I     R  + PS    K  LD     +SK      R+R   T     
Sbjct: 1   MLTRKQIQLLEFIQARMARDGVPPSFDEMKLALDL----RSKSGNSPPRDRPXGTRGSSA 56

Query: 57  ---------SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                     I ++  + ++       +                +     +        G
Sbjct: 57  ACRIAPVRWEIVRLPESLSKGPGFQPRVIEGTMPDRPGPLPRGAMEVSVSAIELPVM--G 114

Query: 108 VFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165
               G     +              + Q +    + +  SM       GD++++      
Sbjct: 115 RIAAGLPIEAISEISHHIAVPTTMLSGQDRHYALEVRGDSMIEAGINDGDVVVIREQNAA 174

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             GD ++      +   K    + G  I L + N  Y    +    +    R++
Sbjct: 175 ESGDIVVALVDGYEATLKRYRRK-GNMIALEAANPAYETRVLPEDKVRIQGRLV 227


>gi|301386007|ref|ZP_07234425.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13]
 gi|302058863|ref|ZP_07250404.1| putative phage repressor [Pseudomonas syringae pv. tomato K40]
          Length = 238

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 64/229 (27%), Gaps = 20/229 (8%)

Query: 11  EAIDRMA-ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +      L+    A + GLD +  ++      +   +  +T    KI       +
Sbjct: 6   QRISALRTAMAGLSQKDFANQHGLDASYLSQLLNGHRKLGEKAAATLE-EKINLHPGTLV 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L                +       S                   V           
Sbjct: 65  NPELSSGSDAAEIIVPTVAPVDSRTVMQSLGFITIPHLDVAASMGSGNVPPDSQIEVIKD 124

Query: 130 -------------IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                         ++             SM   +R GD L+++  I     D + +   
Sbjct: 125 ITVHLDWLKTQGLAFSRIENLAIITGDGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTL 184

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI--LW 220
            GD+  K L    G ++ ++S N  YP   +E +D   +   AR+  +W
Sbjct: 185 DGDLYIKRLQRMTGGALRMISDNPLYPAIIIEGADLTKVHIQARVLLVW 233


>gi|229590309|ref|YP_002872428.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens
           SBW25]
 gi|229362175|emb|CAY49077.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens
           SBW25]
          Length = 235

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 25/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S K +   I    E+  L+ + LA+  G      ++S+    E   R P+ + I KI  
Sbjct: 20  RSMKTLGSRIAHYREKAGLSQAALAKACGWK----SQSRIGNYEKDAREPNLDDISKIAH 75

Query: 64  ATNETICQLLDLPFSD----GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                   LL    S           K    P++ +  +G+        +P G   +T  
Sbjct: 76  ELKIDPAALLLPGESPSNISIAAQPTKSFRYPVVSWVAAGAWAEAVE-PYPAG-ISDTYE 133

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IK 174
             E        Y  +        +  SM         +G ++++++  +V  G  ++   
Sbjct: 134 FSE--------YDSKGPAFWLTVKGDSMTAPAGQSITEGTLILVDTEAEVAPGKLVVAKL 185

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           P + +   K L+S  G  + L  LN  YP++ V+  +   +  ++ A Q
Sbjct: 186 PDSNEATFKKLVSD-GGRLFLKPLNPSYPIEAVD-ENCRIVGVVVQALQ 232


>gi|262043414|ref|ZP_06016539.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039240|gb|EEW40386.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 207

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 67/211 (31%), Gaps = 21/211 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNE 67
           +            +T + +A  AG+   S    +     GR R P +   + K L  +  
Sbjct: 3   LAARFKARRIELGMTQTEVANVAGVSQQSIESIE----SGRTRKPRNVLELAKALKCSP- 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                L    +     E   + IP+L +  +G            G  +  V         
Sbjct: 58  ---DWLLNGKNIMPLAEVSTRHIPILSYVQAGQCTEARDYTNMEGE-FEYVLADAD---- 109

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                +       +    SM P +++GDI+I++  +    G+ ++ K    +   K    
Sbjct: 110 -----VPETCFALRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNNGHEATFKKYRP 164

Query: 188 RRGR--SIDLMSLNCCYPVDTVEMSDIEWIA 216
                   +L+ LN  YPV       +  I 
Sbjct: 165 LGIGIEDFELVPLNPDYPVLRSAELPLRVIG 195


>gi|238898738|ref|YP_002924420.1| APSE-2 prophage; cI [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466498|gb|ACQ68272.1| APSE-2 prophage; cI [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 260

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 32/232 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   +  K+ + I ++     + + + L+R+ G+   + ++       G  + P  + I 
Sbjct: 29  MGMMT-AKLNKNIKKLMAEKGVKSVAELSRRIGMPQPTLHRML----SGEVKSPRLKIIQ 83

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG----------------GF 103
           KI         +LL         + + + +        +                   G+
Sbjct: 84  KIADFFRVEANELLYKDLITSHISIENKTKAYERVEVKAIPFNFCKVPVLGTTQLGGGGY 143

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
           ++S     G+ +  +  P                   + Q  SM+P  + G+ +++    
Sbjct: 144 WNSKESSAGHDYGYIIWPTE----------DRDAFALRCQGESMMPRIQHGEFVVMEPNH 193

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   GD +L++   G ++ K  + +R   + L+S+N  +P   +  S IE I
Sbjct: 194 KYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAASTIEKI 245


>gi|218555126|ref|YP_002388039.1| putative repressor CI from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361894|emb|CAQ99494.1| putative repressor CI from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 224

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 24/224 (10%)

Query: 5   SHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   + + I  + ++  ++  + LAR+  L+  + ++     + G  + P   ++ +I  
Sbjct: 4   TTDILSQNIKYLMDKAKISSITELARRLQLNQPTLHRL----VSGEVKDPKYATLKQIAN 59

Query: 64  ATNETICQLLDLPFSDGRTTEK---------KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             + +   L +    +    +          +  ++P+L     G GG +    +  G+ 
Sbjct: 60  YFHVSPIDLAERSLQEMEKEDATGIKTYISLRFNKVPVLGNTQLGVGGLWSDTQYSVGSS 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
              +  P                   K    SM+P  ++G+ +I+        GD +L+ 
Sbjct: 120 DGFIYWPTK----------DEDAYALKCVGDSMMPRIKEGEFVIVEPNHDYTPGDEVLVV 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            R G+++ K  +  R     LMS+N  +P   V   +IE I  +
Sbjct: 170 TRDGEVMVKTFLFERDGLFHLMSVNEDHPPVRVPRENIEKIHYV 213


>gi|254224901|ref|ZP_04918516.1| transciptional regulator [Vibrio cholerae V51]
 gi|125622589|gb|EAZ50908.1| transciptional regulator [Vibrio cholerae V51]
          Length = 264

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 69/241 (28%), Gaps = 26/241 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            K+  + + +      +   G    +A+K G+ P + +K          R    E I   
Sbjct: 23  RKEFAQRLAQACNDAGIDAHGRGVIIAKKIGVTPKAVSKWLNAESM--PRQNKMEEIANF 80

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGNK 114
           L  +   +       FS+ +          +  +  S   G       F        GN 
Sbjct: 81  LGVSLFWLQYGKQESFSEVKEKPNAYMLGEMQEWDSSTPLGDDEVMVPFLSDVRLSAGNG 140

Query: 115 WNTVG-------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
           +           +   +S                    SM P+   G  + +N A +   
Sbjct: 141 FLNEEELDNGFKLRFAKSTLRRYGVCAKDAVCVSVSGNSMEPVLPDGSTVGINRADRTLS 200

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIE-----WIARILWA 221
             ++      G++  K L    G  + + S N   YP      + +       I R+ W 
Sbjct: 201 DGKIYAINHNGELFIKRLYKLPGGGVRIYSFNEIEYPPREYTEAQVVEQKISIIGRVFWY 260

Query: 222 S 222
           S
Sbjct: 261 S 261


>gi|218547977|ref|YP_002381768.1| Cro/CI family transcriptional regulator [Escherichia fergusonii
           ATCC 35469]
 gi|218355518|emb|CAQ88129.1| putative transcriptional regulator, Cro/CI family from phage origin
           [Escherichia fergusonii ATCC 35469]
          Length = 228

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 16/228 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +    E   ++ + LA K GL   S  K +        +    + I K+L  + 
Sbjct: 2   KTLAERLKIGREIAGMSQAQLAEKIGLSQQSVAKIENGET---LQPRKIKEIAKVLGVSQ 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-----VP 121
           + +   ++   S      K+ +   L                   G     V       P
Sbjct: 59  KWLQLGIEDNASIPDLVVKEAESTALDPDIFVNIPVLDVELSAGNGCLAEIVESAIDWFP 118

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179
             R+         +     K    S+LP+   GD++ ++    + +  GD L        
Sbjct: 119 LRRADLRKSGVCASNAKIVKIWGNSLLPVLNNGDLVAVDISQTVPIRDGD-LYAVRDGVL 177

Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD----IEWIARILWAS 222
           +  K+LI+     + L S N   YP + +   D    I  I R+ W+S
Sbjct: 178 LRVKILINLPDGGLILRSFNKDEYPDEILTFEDRRARIHVIGRVFWSS 225


>gi|154253617|ref|YP_001414441.1| LexA repressor [Parvibaculum lavamentivorans DS-1]
 gi|171769676|sp|A7HY01|LEXA_PARL1 RecName: Full=LexA repressor
 gi|154157567|gb|ABS64784.1| SOS-response transcriptional repressor, LexA [Parvibaculum
           lavamentivorans DS-1]
          Length = 237

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 62/232 (26%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++   I    +   ++PS   +     L   +  ++      +R  I      
Sbjct: 1   MLTRKQHELLMFIHERIKEGGVSPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLPHR 60

Query: 53  PSTESIFKILA----ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                I K+      +      +       +G    K              +      G 
Sbjct: 61  ARALEILKLPDAASPSLAMARGRGFSPSVIEGGAQPKPSSRDLAPARSSGDTMTLSVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G     +     +           +    + +  SM       GD +++        
Sbjct: 121 IAAGTPIEALQEESHQVSVPLNLLGSGEHYALEVKGDSMIEAGILDGDTVLIQRCDTATS 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K L  ++G SI L + N  Y         ++   +++
Sbjct: 181 GDIVVALVDGYEATLKRL-RKKGDSIALEAANPAYETRIFGPDRVKVQGKLV 231


>gi|332981967|ref|YP_004463408.1| SOS-response transcriptional repressor, LexA [Mahella australiensis
           50-1 BON]
 gi|332699645|gb|AEE96586.1| SOS-response transcriptional repressor, LexA [Mahella australiensis
           50-1 BON]
          Length = 207

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 31/222 (13%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESI 58
           +   K+I + I  + E     PS   +    GL  TS      KR   +G  +   T+  
Sbjct: 6   TVKQKQILDFIKSITEERGYPPSIREIGDAVGLSSTSTVHGYLKRLEAKGAIKRDPTK-- 63

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                           +    G  ++ +      L   P          +    N     
Sbjct: 64  -------------PRAMEVIYGEPSDDENISKVELANIPVLGRVAAGQPILAQENIEEYF 110

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTS-MLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P         +   ++    + +  S         D +++        GD ++     
Sbjct: 111 PLPLD-------FIQNSEAFMLRVKGDSMYEAGILDNDYIVVRKQETAQNGDIVVALID- 162

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K         I L   N       V+  D++ + +++
Sbjct: 163 DDATVKRFYKEED-HIRLQPENPFMQPIIVK--DVKILGKVI 201


>gi|144898408|emb|CAM75272.1| Peptidase S24, LexA repressor [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 236

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 54/231 (23%), Gaps = 13/231 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +    ++   ID       ++PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQYELLMFIDERLRATGISPSFDEMKDALDLKSKSGIHRLITGLEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETI---CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                + K+     +           P        +            + +      G  
Sbjct: 61  ARALEVVKLPDNLGDQPLPAPSAKFSPTVIQGNFTQTVFAGAAPVAGVADAVSLPLYGKI 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168
             G     +                        +  SM       GD +I+ S      G
Sbjct: 121 AAGTPIEALRDHSNSVEVPAALLTGGDHYALTVEGDSMIEAGILDGDTVIIRSCDTAEAG 180

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             ++      +   K L  +   SI L   N  Y         ++   R++
Sbjct: 181 TIVVALVDDQEATLKRLRRKGA-SIALEPANKAYETRIFPPDRVKVQGRLV 230


>gi|153001080|ref|YP_001366761.1| putative phage repressor [Shewanella baltica OS185]
 gi|151365698|gb|ABS08698.1| putative phage repressor [Shewanella baltica OS185]
          Length = 225

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 16/222 (7%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   +T   LA +A +     +K     ++   +  +  +  +  A   +   +     
Sbjct: 1   MEAIGMTQKELAERADISQVMVHKLVSGKVKTTGKLLNIAAALRCTAEELQYGEEGAKAK 60

Query: 77  FSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNKW-NTVGV-----PEIR 124
            ++   +  +      ++   +          F+       G+   +            +
Sbjct: 61  AANRIESNAEWAGGFEIWDSDTPLGEDEVEIPFYMEVELAAGDGILDCREFKGPKLRFTK 120

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           S               K    SM P+   G  + ++++       ++      G +  KV
Sbjct: 121 STLKRQGVNSDYAACVKVNGNSMEPILPHGSTVGVDTSATDVIDGKMYAINHDGMLRIKV 180

Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMS---DIEWIARILWAS 222
           L    G  + L S N   YP + ++      ++ I ++ W S
Sbjct: 181 LYKLPGGGLRLRSYNTDEYPDERLDADQVKQVKVIGKVFWYS 222


>gi|254294062|ref|YP_003060085.1| LexA repressor [Hirschia baltica ATCC 49814]
 gi|254042593|gb|ACT59388.1| SOS-response transcriptional repressor, LexA [Hirschia baltica ATCC
           49814]
          Length = 228

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 4/222 (1%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +   +++   I +  +   ++PS    K+ LD  S +   R       R         
Sbjct: 1   MLTNKQRELLLFIHQRIKETGVSPSFDEMKSALDLASKSGIHRLITALEERGFLRRLPHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + +             P     + +        +      +      G    G     +
Sbjct: 61  ARAIEVLKLPESATPSAPPLGRSSFKPAIVSRDGVSSKNVANDTIPVLGRIAAGVPIAAI 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                R     +     Q    + Q  SM       GDI+IL        G+ ++     
Sbjct: 121 QNETDRITAPTLGMNSDQHFALEVQGDSMIEAGILDGDIVILKKGDTAISGEIVVALVNE 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K +  +R  SI L + N  Y         +    +++
Sbjct: 181 EEATLKRI-RKRNGSIALEAANPAYETRIFGPDKVRVQGKLV 221


>gi|303257549|ref|ZP_07343561.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
 gi|302859519|gb|EFL82598.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
          Length = 227

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 66/219 (30%), Gaps = 12/219 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +        L  S +AR   + P S +        G+++   +  + K+      +
Sbjct: 7   LAERLTLALSDSGLKKSDIARLCFISPASVSDWF----SGKSKSIKSIYLPKVAKVLGVS 62

Query: 69  ICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              L               E       +          +  F   +    +      +  
Sbjct: 63  STWLATGNGPMKSPNVLVTEDVCDDDDWVEIPEYKIRFAAGFEQNSTLEELASEYKAAYR 122

Query: 128 NGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
              +           R K +  SM PL    D+++++ +       R+        +  K
Sbjct: 123 RSWFQRKNINPEDCKRFKVKGDSMEPLLLDHDVVLVDCSKTEIIDGRIYAFVFGDALRVK 182

Query: 184 VLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
            L  +   SI + S N  +P +T+   +   ++ I  ++
Sbjct: 183 RLYRKIDGSIMVHSENPNFPDETISPADTEQVQVIGEVI 221


>gi|257879532|ref|ZP_05659185.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883466|ref|ZP_05663119.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|294622463|ref|ZP_06701485.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           U0317]
 gi|257813760|gb|EEV42518.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257819124|gb|EEV46452.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|291598010|gb|EFF29120.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           U0317]
          Length = 234

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 31/235 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  + E++N+    LA K G    +S ++ ++         P  +++ +I    N  I
Sbjct: 4   ENLKFLREKYNIDQQELAEKLGRKSSSSISEWEKGKYT-----PKLKTLNEIAKIFNVDI 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-------- 121
             L+++  S              L      +   F S       + N +  P        
Sbjct: 59  DDLMNIDLSISNQIYNILPIYNQLNDENKVATYEFASNRLEEQKQENVLDFPKKEKIPTV 118

Query: 122 ----------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
                            +             D        SM P+ R G  + +     V
Sbjct: 119 HNSASAANPTELTYGDTVVEEEEFERVPSAADFAVPIIGDSMEPVIRNGQFVFVKEQPDV 178

Query: 166 NCGDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+  +++     +  K +      ++I L S+N  Y    V    I  I +++
Sbjct: 179 EDGEIAIVELGGDGVTCKEIYKDYENQTIILRSINDLYEDRIVSPEQIRIIGKVV 233


>gi|330963891|gb|EGH64151.1| putative phage repressor [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 238

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 11  EAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +      L+    A + GLD +  ++      +   +  +T    KI       +
Sbjct: 6   QRISALRAAMAGLSQKDFANQHGLDASYLSQLLNGHRKLGEKAAATLE-EKINLRPGSLV 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L       +        +       S                   V           
Sbjct: 65  NPELLSGSDPDQLIVPVVAPVDSRTVMQSLGFITIPHLDVAASMGSGNVPPDSQIEVIKD 124

Query: 130 -------------IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                         ++             SM   +R GD L+++  I     D + +   
Sbjct: 125 ITVHLDWLKTQGLAFSRIENLAIITGDGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTL 184

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI--LW 220
            GD+  K L    G ++ ++S N  YP   +E +D   +   AR+  +W
Sbjct: 185 DGDLYIKRLQRMTGGALRMISDNPLYPAIIIEGADLTKVHIQARVLLVW 233


>gi|209964501|ref|YP_002297416.1| LexA repressor [Rhodospirillum centenum SW]
 gi|226694238|sp|B6IST2|LEXA_RHOCS RecName: Full=LexA repressor
 gi|209957967|gb|ACI98603.1| LexA repressor [Rhodospirillum centenum SW]
          Length = 237

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 60/232 (25%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKS-----KRFGIEGRNRW 52
           M +   +++   I    +   ++PS   +    GL   S  ++      +R  I      
Sbjct: 1   MLTRKQQELLLFIHERLKDGGVSPSFDEMKDALGLKSKSGIHRLITGLEERGFIRRLPHR 60

Query: 53  PSTESIFKILAATNE----TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                + ++             +       +    + +           + +      G 
Sbjct: 61  ARALEVLRLPEQPAPLRVAPRTEEPVRFRPNVIRGDFRGALPGREARGDAEAVSLPLYGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G     +                 +    +    SM+      GD +I+        
Sbjct: 121 IAAGLPIEALRDTTASIDVPTGLIASGEHYALEVAGDSMVDAGILDGDTVIIQRCETAEN 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G  ++      ++  K L  + G SI L   N  Y         +    R++
Sbjct: 181 GTVIVALVDDNEVTLKRLRRK-GNSIALEPANPAYETRVFGADRVRIQGRLV 231


>gi|15888721|ref|NP_354402.1| LexA repressor [Agrobacterium tumefaciens str. C58]
 gi|25453092|sp|Q8UFK2|LEXA_AGRT5 RecName: Full=LexA repressor
 gi|15156463|gb|AAK87187.1| LexA repressor [Agrobacterium tumefaciens str. C58]
          Length = 240

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 16/234 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+  A             S    +  K KE        + +  F  +   P  
Sbjct: 61  ARALEVIKLPEAYTPGARPQRGFSPSVIEGSLGKPKEPEPAPAVKAPANDFAGAATIPVM 120

Query: 113 NKWNTVGVPEIRSPHNGIYAIQ------TQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165
            +            +    A+        +    + +  SM       GD +I+ +    
Sbjct: 121 GRIAAGVPISAIQNNTHDLAVPVDMLGSGEHYALEVKGDSMIEAGIFDGDTVIIRNGNTA 180

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           N GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 NPGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGKLV 233


>gi|293392401|ref|ZP_06636723.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
           4582]
 gi|291425055|gb|EFE98262.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
           4582]
          Length = 228

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 72/231 (31%), Gaps = 22/231 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E      E   L+   LA K G+   S  K +      + R      I ++  +  
Sbjct: 2   KTLAERFKFARENSGLSQDDLAAKVGVTQQSIAKIENGIT-LQPR-----KIKELALSLG 55

Query: 67  ETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-------TV 118
            +   L      +   +    ++    +  P               GN          + 
Sbjct: 56  VSQQWLQLGIEENAELSNYVVKESEEAILDPELFVSVPILDIELSAGNGAEAELIESCSD 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPR 176
             P  R          +     K    S+LP+   GD + +++     +  GD L     
Sbjct: 116 TFPLRRDDLRRAGVSASNARIVKIWGNSLLPVLTNGDYVAVDTTHTQSIRDGD-LYAIRD 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD----IEWIARILWAS 222
              +  K ++S     + L S N   YP + +  ++    +  I R+ W+S
Sbjct: 175 GVLLRVKTVVSLPDGGVILRSFNKEEYPDEVLSYNERKARVHVIGRVFWSS 225


>gi|257066290|ref|YP_003152546.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
           20548]
 gi|256798170|gb|ACV28825.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
           20548]
          Length = 206

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 76/217 (35%), Gaps = 25/217 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++ E   +    LA+  G++  + +  +R       R PSTE + K     N +
Sbjct: 3   LGAKLKQLREEQEMKQETLAQILGINRATISMYERNQ-----RVPSTEILQKYTKTFNVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              LL            ++  IP+      G+    D  ++   +               
Sbjct: 58  SDYLLGNTHYKSNNINNEKYTIPVYASISCGNPFVADENIYDFEDIDI------------ 105

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                Q +      +  SM P ++ GD+ I+     ++ G    ++    +   K ++ +
Sbjct: 106 -ALKSQGEHFGLLCRGDSMSPEFKDGDVAIIRKQSDIDSGQVAAVRINGDEATLK-IVKK 163

Query: 189 RGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARIL 219
             + I L+++N   +        +     +E I R++
Sbjct: 164 SEQGITLVAINPDVFLPQFYSNEEIINLPVEIIGRVI 200


>gi|219870852|ref|YP_002475227.1| transcriptional activator-regulator PrtR/CI repressor [Haemophilus
           parasuis SH0165]
 gi|219691056|gb|ACL32279.1| transcriptional activator-regulator PrtR/CI repressor [Haemophilus
           parasuis SH0165]
          Length = 223

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 19/224 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I++      L    LA    +   +         + + R      + +I  A N  
Sbjct: 4   LGERIEQAMNLKGLKRKELAEMLNISTMAVGDLINNKTK-KPR-----YLVEIAEALNVD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L              +       +  +             GN    +     +S   
Sbjct: 58  VKWLQTGEGEMRSHVNDVDVIDKDKDYSNTHINIDMYDIKLSAGNGKPVIEWVPRKSDEP 117

Query: 129 GIYA---------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            ++                    +  SM P+    D +I++ +        +        
Sbjct: 118 LLFREAWFKVKRLSPKNCKAMYVRGHSMAPVLEDWDTVIVDISDTEIADGEVYAVVYNKH 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILW 220
              K +I   G+ I L+S N  Y    V   D   ++ I R +W
Sbjct: 178 FYIKQIIR-TGKGIQLVSFNPEYYPIDVMDDDLNNLQIIGRKVW 220


>gi|170748438|ref|YP_001754698.1| LexA repressor [Methylobacterium radiotolerans JCM 2831]
 gi|229621225|sp|B1LUJ7|LEXA_METRJ RecName: Full=LexA repressor
 gi|170654960|gb|ACB24015.1| transcriptional repressor, LexA family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 242

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 19/237 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-------- 52
           M +     +   I    +   + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQLDLLRFIQSRMQECGVPPSFDEMKDALDLKSKSGIHRLITALEERGFLRRLPNR 60

Query: 53  ---------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
                    P + +       T     +        G++ +        +      +   
Sbjct: 61  ARAIEVIRIPESLTQAAPAPQTPAEPRRFTPSVVEGGKSKQPPAPASTRMIDESGRAISI 120

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSA 162
              G    G   + +         +  +    +    + +  SM       GD++++   
Sbjct: 121 PVMGRIAAGTPVSAIQNQSHAITLSPDFVAGGEHYALEVRGDSMVEAGILDGDLVVIRKQ 180

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              N GD ++      +   K L  R G SI L + N  Y    +    +    R++
Sbjct: 181 DTANTGDIIVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGRLV 236


>gi|114771089|ref|ZP_01448529.1| LexA repressor [alpha proteobacterium HTCC2255]
 gi|114548371|gb|EAU51257.1| LexA repressor [alpha proteobacterium HTCC2255]
          Length = 228

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 59/223 (26%), Gaps = 5/223 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +     + E I +  ++  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQLDLLEFIHKRLQKDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + +                              L    + +      G    G     +
Sbjct: 61  ARAIEILRLPESIDGGGFQPRIIEGSLTPPPAAALPIEAANALTLPIMGRIAAGTPIEAI 120

Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                     G       +    + +  SM       GDI+++N       GD ++    
Sbjct: 121 QQVSNNVSVPGEMLKNSGRHYALEVKGDSMIEAGINDGDIVVINEQNDAENGDIVVALVD 180

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K L  +RG  + L + N  Y         ++   +++
Sbjct: 181 DQEATLKRL-RKRGTVVALEAANPAYETRVYRDDQVKVQGKLV 222


>gi|304391662|ref|ZP_07373604.1| repressor LexA [Ahrensia sp. R2A130]
 gi|303295891|gb|EFL90249.1| repressor LexA [Ahrensia sp. R2A130]
          Length = 233

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 57/227 (25%), Gaps = 9/227 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTKKQHELLMFIQERMKEAGVPPSFDEMKDALDLKSKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-----SGVFPTGN 113
            + L                        E  +       +   G         G    G 
Sbjct: 61  ARALEVIKLPDSYQPSPAGRRPFEPSVVEGGLGRAPEMVANDTGPAMTEVPVMGRIAAGT 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + +         +     + +    + +  SM       GD +++        GD ++
Sbjct: 121 PISAIQENTHTIAVSPDMLGRGEHYALEVKGDSMIEAGILDGDTVVIQRGDTATPGDIVV 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K    + G SI L + N  Y         +    +++
Sbjct: 181 ALVDHEEATLKRFRRK-GDSIALEAANPAYETRIFGPDRVAVQGKLV 226


>gi|120610433|ref|YP_970111.1| putative prophage repressor [Acidovorax citrulli AAC00-1]
 gi|120588897|gb|ABM32337.1| phage repressor protein [Acidovorax citrulli AAC00-1]
          Length = 230

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 70/219 (31%), Gaps = 15/219 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I E +    ER  LT   LA++A +   +    +    + R R     +    ++   
Sbjct: 11  KTIAERLRAARERAGLTQPALAQRANVSQGTIGNIESGLRK-RPRDLLAIAAALHVSPLW 69

Query: 67  ET-----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                  +    D           + +  P++    +G          P G+  +    P
Sbjct: 70  LETGQGLMHGDHDQANVSTAPASMRPRRYPVISSVQAGEWEEIVDQFSP-GDAEDWQDSP 128

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180
               P+  +  ++     +          + +G  + ++  ++   GD ++  +      
Sbjct: 129 VDLGPNGFVLKLEGSSMTNPAGGR---DNFPEGMYVHIHPGVEAQPGDYVVAKREADNKA 185

Query: 181 VAKVLISRRGRSIDLMSLNCCYPV--DTVEMSDIEWIAR 217
             K L+   G    L ++N  +P     +E  D   I +
Sbjct: 186 TFKKLVRVDGEQF-LHAINPAWPKPYIKLEPGD-RIIGK 222


>gi|212499706|ref|YP_002308514.1| cI [Bacteriophage APSE-2]
 gi|211731675|gb|ACJ10163.1| cI [Bacteriophage APSE-2]
          Length = 232

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 32/232 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   +  K+ + I ++     + + + L+R+ G+   + ++       G  + P  + I 
Sbjct: 1   MGMMT-AKLNKNIKKLMAEKGVKSVAELSRRIGMPQPTLHRML----SGEVKSPRLKIIQ 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG----------------GF 103
           KI         +LL         + + + +        +                   G+
Sbjct: 56  KIADFFRVEANELLYKDLITSHISIENKTKAYERVEVKAIPFNFCKVPVLGTTQLGGGGY 115

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
           ++S     G+ +  +  P                   + Q  SM+P  + G+ +++    
Sbjct: 116 WNSKESSAGHDYGYIIWPTE----------DRDAFALRCQGESMMPRIQHGEFVVMEPNH 165

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   GD +L++   G ++ K  + +R   + L+S+N  +P   +  S IE I
Sbjct: 166 KYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAASTIEKI 217


>gi|262044717|ref|ZP_06017768.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259037939|gb|EEW39159.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 239

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 67/236 (28%), Gaps = 14/236 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI-- 58
           M   + K + + ++       ++   LA+ A +   +  +      +G  R     +   
Sbjct: 1   MQESTLKTLADRLNFAMHEMGMSQGQLAKAANMAQPTIWRITSGNAKGTTRIVDLANALG 60

Query: 59  ---FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK- 114
                +   +             D      K  +             F     F  G+  
Sbjct: 61  VRPEWLSDGSGPMKPSSAHQLPKDQEYVGVKTWDKSTPLEDDEVEVPFLKDIEFACGDGR 120

Query: 115 ---WNT----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
               +     +   +      G             +  SM P+   G  + +N+  +   
Sbjct: 121 IGNEDYNGYKLRFAKSTLRQIGASTDGHGILCFPVRGDSMEPVIPDGTTVAINTEDKKIV 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
             ++      G    K+L      ++ + S N   +P +   ++ IE I R+ W S
Sbjct: 181 DGKIYAISEDGWKRVKMLYRTGPDTVSVRSFNSVEHPAEDKPLNKIEIIGRVFWYS 236


>gi|212712325|ref|ZP_03320453.1| hypothetical protein PROVALCAL_03413 [Providencia alcalifaciens DSM
           30120]
 gi|212685071|gb|EEB44599.1| hypothetical protein PROVALCAL_03413 [Providencia alcalifaciens DSM
           30120]
          Length = 224

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 21/220 (9%)

Query: 6   HKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           ++ + + I  + +   ++  + LAR+  +   + ++       G  + P    +  I   
Sbjct: 5   NELLIKNIKHLMDTKGISNHTELARRLKMHQPTMHRLL----SGEVKDPKISVVKNIADF 60

Query: 65  TNETICQLLDLPFSDGRTTEKKEK------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +  +  L D   +       +         IP++     G GG +    +P G     +
Sbjct: 61  FHVPLTDLTDADLTKKENGVPQSAISVNYTSIPVVGRAQLGEGGCWSDLQYPIGMGEGYI 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             P                        SM+P  ++G+ +I+        GD +L+   T 
Sbjct: 121 HWPTS----------DPDAYALLCVGDSMIPRIKEGEFVIIEPNHTYRPGDEVLLVTSTE 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           + + K  +  R   I L S+N  +P   VE   ++ I  +
Sbjct: 171 ETMVKTYLYERDGYIHLSSINDAHPPIKVEQIKVDKIHYV 210


>gi|311695997|gb|ADP98870.1| phage repressor [marine bacterium HP15]
          Length = 225

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 73/202 (36%), Gaps = 13/202 (6%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           +    A KAG+  ++F       +      P  +S+ +I  A   ++  L          
Sbjct: 30  SARSFAHKAGMGDSTFRNILNGAL------PRLDSLLRIAKAAGVSVEWLATGKEPAKSD 83

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
           ++ +E+   +  +    + G         G++  T  +   R         + +      
Sbjct: 84  SQFEEEFALIPGYNVQVAAGHGSI----AGDEAPTRELAFRRKWLRFRGLQENELALVFA 139

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
           +  SM P     + ++++++ +      + +      ++ K + +     + L+S N  Y
Sbjct: 140 KGDSMEPTISDNETVMVDTSEKKLRDGHIYVIRNGDHLLVKRIQTLWNDGVQLLSDNKEY 199

Query: 203 PVDTVEMSDIE---WIARILWA 221
           P   +  SD+E    I +++W 
Sbjct: 200 PPQEISKSDLENLDVIGKVVWV 221


>gi|83951834|ref|ZP_00960566.1| LexA repressor [Roseovarius nubinhibens ISM]
 gi|83836840|gb|EAP76137.1| LexA repressor [Roseovarius nubinhibens ISM]
          Length = 232

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 13/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + + I++  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLDYINKRIQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +                     +  +          +      G    G
Sbjct: 61  ARALEIVKLPESLGGAP--AHGFTPRVIEGDRPEAGQPANARPVEVHALELPVMGRIAAG 118

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
                +          G   + Q      + +  SM       GDI+++      + GD 
Sbjct: 119 VPIEAINHVSHNVAVPGAMVSGQGNHYALEVKGDSMIEAGINDGDIVVIRETSTADNGDI 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    R G +I L + N  Y    +    ++   R++
Sbjct: 179 VVALVEDQEATLKRFFRR-GGAIALEAANPAYETRVLPDDKVKVQGRLV 226


>gi|257451797|ref|ZP_05617096.1| SOS-response transcriptional repressors [Fusobacterium sp. 3_1_5R]
 gi|317058353|ref|ZP_07922838.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R]
 gi|313684029|gb|EFS20864.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R]
          Length = 208

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 27/217 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + I ++ +   LT    ++ AG+ P S  K +        R  S E++  I     
Sbjct: 8   ETIGDKILKLRKETALTQEQFSKIAGVTPLSILKYESGE-----RLISIETLLNIANYFK 62

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I         +    ++   +IP++    +G+G           +  + +   E    
Sbjct: 63  IPIS---YFLGENILKVDENMIKIPVVSVVSAGNGKCGLD------DITDWIEFSENIF- 112

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                     D        SM P     DIL++     ++ GD  + K    D+  K L 
Sbjct: 113 -------PACDFATTVSGDSMEPKIFDSDILLIRKTETLDSGDIGIFKID-EDVFCKKLQ 164

Query: 187 SRR-GRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
                  + L SLN CY    +   ++E    I +++
Sbjct: 165 LNHLTNEVILKSLNPCYAPRYLSKEELENFKIIGKVV 201


>gi|220904000|ref|YP_002479312.1| putative phage repressor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868299|gb|ACL48634.1| putative phage repressor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 225

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 71/230 (30%), Gaps = 19/230 (8%)

Query: 1   MTSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M +FS   + +A    + +  E   +    +A + G+  T+  K +        + P  E
Sbjct: 1   MKTFSQAGLTKAFAQRLRQRREELGMHKQDMAARVGVSLTTIQKYENG------QMPKGE 54

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              ++    + ++  LL    +   + +   +   ++                  G+   
Sbjct: 55  YAVRLADTLDCSLDWLLAGKGAADGSGQNCGEARLVMVPMVEARLSAGTGSFETGGDVLR 114

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                       G     +Q    +    SM P     D+++++   +     R+     
Sbjct: 115 HYAFRWDFLRRKG---NPSQMVLLRVSGDSMQPRIMHNDVVLIDQTQRDPVPGRIYAVGV 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARILWA 221
              +  KV+ +     + L S N  Y     +  +     +  I R +W 
Sbjct: 172 EDMVYLKVVNAMP-GRLILTSFNPDYAPIEADTGEQLADLVRVIGRAVWV 220


>gi|167646744|ref|YP_001684407.1| LexA repressor [Caulobacter sp. K31]
 gi|189046532|sp|B0SYZ8|LEXA_CAUSK RecName: Full=LexA repressor
 gi|167349174|gb|ABZ71909.1| transcriptional repressor, LexA family [Caulobacter sp. K31]
          Length = 235

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 60/230 (26%), Gaps = 13/230 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   ++PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQHELLMFIHERIKESGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILA--------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
            + L          T                   +              S      G   
Sbjct: 61  ARALEVVKLPQQATTAAPPKGRGAFRPQVLEGGGQAPTTSAQPQMAADNSRELPILGRIA 120

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
            G   + +     R P         +    + Q  SM       GD +I+      N G+
Sbjct: 121 AGTPIDAIQHERERLPVPESMLGAGEHYVLEVQGDSMIEAGILDGDYVIIKKGDTANSGE 180

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K L  ++G SI L + N  Y         +E   +++
Sbjct: 181 IVVAL-VGEEATLKRL-RKKGGSIALEAANPKYETRIFGPDQVEVQGKLV 228


>gi|296283865|ref|ZP_06861863.1| LexA repressor [Citromicrobium bathyomarinum JL354]
          Length = 228

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 55/221 (24%), Gaps = 6/221 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    E   ++PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTAKQHELLRFIHERLEETGISPSFEEMKEALDLKSKSGVHRLISALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNT 117
            + L         +             +   +P      +         G    G     
Sbjct: 61  ARALEVLKMPESAVAGSAPKAANDLGARTTSVPARMPEAANDVIDIPLHGRIAAGAPIEA 120

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           +   +   P         +    +    SM       GD  ++  A     GD ++    
Sbjct: 121 LEDHQSL-PVPAALLGPGEHFALEVSGDSMIEAGIFDGDYALIRRADTARDGDIVVALVE 179

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
             +   K L    G  + L   N  Y     +   ++   +
Sbjct: 180 NEEATLKYLWR-EGGRVRLDPANPSYEPQVYDARAVQVQGK 219


>gi|325679534|ref|ZP_08159114.1| peptidase S24-like protein [Ruminococcus albus 8]
 gi|324108821|gb|EGC03057.1| peptidase S24-like protein [Ruminococcus albus 8]
          Length = 228

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              + +I + I +  E   +T   L    G + ++  + +  G   + + P  E++ + L
Sbjct: 1   MEKNVEIGKRIKKRREELGMTQEALGSPLGFNKSTIQRYE-AGKVAKIKLPIIEAMAQRL 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV--------FPTGNK 114
             + E +    D         +   +                            F     
Sbjct: 60  NVSPEWLALKSDDMGEYHGAPDSLLESKVSSNVAAVLPQEKIHMIPVFGSVAAGFGAYAS 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
            + +G   +   ++              +  SM P    GD +++     V+ G R+ + 
Sbjct: 120 SDVIGYIPLYIENDFDVV---DTICIIVKGQSMYPKIEDGDRIVVRRQDSVDNG-RVAVV 175

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
               + V K +    G  ++L S N  YP   +E  ++     +    Q
Sbjct: 176 MIGDEAVVKRVNFD-GERLELTSFNPEYPPRIIEGEELANCHIVGLVQQ 223


>gi|146297047|ref|YP_001180818.1| SOS-response transcriptional repressor, LexA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166224565|sp|A4XL42|LEXA_CALS8 RecName: Full=LexA repressor
 gi|145410623|gb|ABP67627.1| SOS-response transcriptional repressor, LexA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 202

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I +  +     P+   +    GL  TS       R   +G   R PS     
Sbjct: 8   KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                              +   P          +    N  +T+ 
Sbjct: 68  EIVD---------------------DDFYVHRNVIRLPLVGKVTAGEPILAVENIEDTIT 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P                   + +  SM+       DI+I+        GD ++      
Sbjct: 107 LPYDLVGTE-------DAFLLRVKGDSMIDAGIFDNDIIIVKRQNVAENGDIVVALID-D 158

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N       V+  D++ + +++
Sbjct: 159 EATVKRFFKESD-HIRLQPENKAMEPIIVK--DVKILGKVI 196


>gi|289671819|ref|ZP_06492709.1| peptidase [Pseudomonas syringae pv. syringae FF5]
          Length = 220

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 16/217 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +    +   L  + LA +AG+  TS +  +R   +       T  + KI         
Sbjct: 5   DRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKA------TAHVAKIADVCGVNAL 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNG 129
            L D            E     +    S    +        G     V   P   +    
Sbjct: 59  WLSDGKGDMTAFITSNEPSNVSMAEQSSRMYRYPLVSWVAAGEWSEAVEPYPPGAADEYD 118

Query: 130 I--YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182
           +  Y  +        +  SM     P   +G  +++++  +V  G  ++     + +   
Sbjct: 119 VSDYKAKGPAFWLVVKGDSMTAPTAPSIPEGSQILIDTRAEVLPGKLVIAKLAGSNEATF 178

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L+   G    L  LN  YP           I  ++
Sbjct: 179 KKLVEDGGVRY-LKPLNSAYPTVQCTEG-CRVIGVVV 213


>gi|197284378|ref|YP_002150250.1| phage reprossor [Proteus mirabilis HI4320]
 gi|194681865|emb|CAR41178.1| phage reprossor [Proteus mirabilis HI4320]
          Length = 233

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 66/225 (29%), Gaps = 9/225 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK------ 60
           K + E I +     N+T + LA   G+ P S  + +      +NR      I +      
Sbjct: 2   KTMRERIKQARLAKNMTQAELAELVGVSPQSVQQWETSTEPRKNRVIKIAEILEVDTNWL 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +   T+      +     +       +    +       S G     +         +  
Sbjct: 62  LFGITDIDERNKVSSIQINQDIEVSDKNTYKVEMLDIQASAGPGVMVLDDFIETITAIEY 121

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
               +         +       +  SM   +   D + ++       GD + +      +
Sbjct: 122 SADEAKRLFGGRSASTIKMITVKGDSMAGTFEPRDQIFVDITTNFFDGDGIYVFVLDNQL 181

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARILWASQ 223
             K L  +  + + ++S N  Y    +E   I   +I   +  SQ
Sbjct: 182 YIKRLQKQY-KRLAVISDNARYETWYLEEDSINSLYIHAKVLVSQ 225


>gi|212712857|ref|ZP_03320985.1| hypothetical protein PROVALCAL_03954 [Providencia alcalifaciens DSM
           30120]
 gi|212684549|gb|EEB44077.1| hypothetical protein PROVALCAL_03954 [Providencia alcalifaciens DSM
           30120]
          Length = 252

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 65/227 (28%), Gaps = 18/227 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K IWEA     +   LT    A   G     + ++             + +    +    
Sbjct: 19  KTIWEA---KRDTLGLTQEKAAEALGFSTQGAVSQYLNGRTALNT-DTTLKFAALLQVQP 74

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIR 124
            +   +L  L        +    E   L      +           G + +     P+  
Sbjct: 75  EDINPELKALLDYVRSNKQASVAEHSPLITRNEHNTLRLLDIYAKAGPSGFMNNEFPDTI 134

Query: 125 SPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +                  SM P     D++ +++  +   GD + +  
Sbjct: 135 RSIEFSSEKVFELFGRKSLKGIEMINITGDSMSPAINPRDVVFVDTHNEYFDGDGVYVFS 194

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219
               +  K L   +G+ + + S N  Y    +E S   D++ I +++
Sbjct: 195 FENALFIKRLQRVKGKKLAVKSDNSAYETFYIEESEMHDLKIIGKVI 241


>gi|217977841|ref|YP_002361988.1| LexA repressor [Methylocella silvestris BL2]
 gi|254809102|sp|B8EK86|LEXA_METSB RecName: Full=LexA repressor
 gi|217503217|gb|ACK50626.1| SOS-response transcriptional repressor, LexA [Methylocella
           silvestris BL2]
          Length = 236

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 62/231 (26%), Gaps = 13/231 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +    ++   I+   +   + PS    K  LD  S +   R  I    R      P+ 
Sbjct: 1   MLTKKQSELLRFINERMKETGVPPSFDEMKDALDLRSKSGIHRLIIALEERGFIRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----- 110
               ++L     +          +    E     +  +        G       P     
Sbjct: 61  ARALEVLRMPGASAADAGRGRKFEPSVIEGHLGRVRPMPAARDDEDGARAMVAIPVMGRI 120

Query: 111 -TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
             G   + +               Q +    + +  SM+       D +++        G
Sbjct: 121 AAGTPISALQTRSHTLNLPPEMLSQGEHYALEVRGDSMIDAGIFDADTVLIRKQDTAETG 180

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++      +   K L  R   SI L + N  Y         +    +++
Sbjct: 181 DIVVALIDDEEATLKRLRRRGA-SIALEAANPAYETRIFGPDRVRIQGKLV 230


>gi|254362846|ref|ZP_04978921.1| possible LexA family repressor/S24 family protease [Mannheimia
           haemolytica PHL213]
 gi|153094483|gb|EDN75317.1| possible LexA family repressor/S24 family protease [Mannheimia
           haemolytica PHL213]
          Length = 219

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 38/232 (16%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKA----------GLDPTSFNKSKRFGIEGRN 50
           MT+         I    E+  ++   +A +               +     +R       
Sbjct: 1   MTTL-----GSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIANYERNN----- 50

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R P  + I  +      +  + L    +       K    PL+    +G         F 
Sbjct: 51  RTPDLDDIEILSKVLGVSP-ETLAFDTNVQLARPTKSNSYPLISNIQAGLWTEAFD--FK 107

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
               ++ +       P              +    SM P + +GD+++++   + + GD 
Sbjct: 108 DSEGYDYIDTEIDAGP---------DAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDY 158

Query: 171 LLIKPRTGDIVAKVLISR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +     TG+   K                +L+ LN  +P  +    DI  I 
Sbjct: 159 VAAVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIG 210


>gi|320199124|gb|EFW73719.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           EC4100B]
          Length = 249

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + ++   E+  ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 20  MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 73

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L           ++  K                       G         E+
Sbjct: 74  ALGVRTEWLSSGIGPMRNDGQQSGKPTVN---HSKYFKIDVLDIEVSAGPGVINREFVEV 130

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                  +                    +  SM      GD+L ++  ++   GD +   
Sbjct: 131 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 190

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
                   K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 191 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 238


>gi|149184609|ref|ZP_01862927.1| LexA repressor [Erythrobacter sp. SD-21]
 gi|148831929|gb|EDL50362.1| LexA repressor [Erythrobacter sp. SD-21]
          Length = 230

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 58/225 (25%), Gaps = 12/225 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWP 53
           M +    ++   I +  E   ++PS   +     L   S      +  +  G     R P
Sbjct: 1   MLTAKQHELIRFIQQKLEETGISPSFEEMKEALDLKSKSGVHRLISALEERGFI--RRLP 58

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +++    +++            T             P +        G    G 
Sbjct: 59  NRARALEVIKLPEDSVTSPSKPAAPANDTVVAVHAPKTAAPEPANDIIEVPLHGRIAAGA 118

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
               +       P              +    SM       GD  ++  A     G+ ++
Sbjct: 119 PIEAIEGQASM-PVPAALLGPGDHYALEVSGDSMIEAGIFDGDFALVKRAETARDGEIVV 177

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
                 +   K L  + G  + L   N  Y     E   ++   +
Sbjct: 178 ALVDNEEATLKYL-RKEGGMVRLDPANGAYEPQIYEAGRVKVQGK 221


>gi|307943610|ref|ZP_07658954.1| transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307773240|gb|EFO32457.1| transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 234

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 27/230 (11%)

Query: 4   FSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++  + E  DR+      +     A K  L  ++  K     I      PS +   +I 
Sbjct: 12  LTNTNLEEFPDRLKALIGTSSVLAFASKCELPGSTVRKYLDGSI------PSLDKATQIA 65

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW------- 115
            A N ++  L             +      +  P               G          
Sbjct: 66  RACNVSLEWLATGQGPKHPRQASEVHAADFIGIPR-------YDAHLSAGGGTWNADKER 118

Query: 116 --NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
             + +             +             SM PL    DI++++ + +    D +  
Sbjct: 119 PLDHIPFTREFLAKRLHKSKPRDLVILMVNGDSMEPLINDDDIVMVDQSKK-RLEDGIFA 177

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
                    K   +     +++ S N  YP + ++     D+  I +++W
Sbjct: 178 FVFDDLAKVKRFRTLANGDLEIRSDNPLYPPEVLQKEQLNDLNIIGKVVW 227


>gi|218550037|ref|YP_002383828.1| Regulatory protein CI from bacteriophage origin [Escherichia
           fergusonii ATCC 35469]
 gi|218553312|ref|YP_002386225.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218357578|emb|CAQ90217.1| Regulatory protein CI from bacteriophage origin [Escherichia
           fergusonii ATCC 35469]
 gi|218360080|emb|CAQ97627.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 242

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + ++   E+  ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 13  MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 66

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L           ++  K                       G         E+
Sbjct: 67  ALGVRTEWLSSGIGPMRNDGQQSGKPAV---SHSKYFKIDVLDIEVSAGPGVINREFVEV 123

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                  +                    +  SM      GD+L ++  ++   GD +   
Sbjct: 124 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 183

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
                   K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 184 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 231


>gi|327198606|ref|YP_004327350.1| phage repressor protein [Erwinia phage phiEt88]
 gi|311875300|emb|CBX44558.1| phage repressor protein [Erwinia phage phiEt88]
          Length = 236

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 62/233 (26%), Gaps = 27/233 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   L+   L    G+   +  K +    +      ST    +I  A   +  
Sbjct: 7   ERLRVSRKNKGLSQKALGDLVGVSQANIQKLENGKSQ------STGYAAQIAEALGVSAI 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG------------GFFDSGVFPTGNK---- 114
            L     +               +   S                F     F  G+     
Sbjct: 61  WLATGNGAKDSLQASSSIPPEHEWGSVSSWDNETPLDDDEVEVHFLKDIEFACGDGTFSS 120

Query: 115 WNT----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            +     +   +      G  +             SM P+   G  + +++  +     +
Sbjct: 121 EDHNGFMLRFSKATLRRVGANSSGEGVLCFPATGNSMEPIIPDGTTVAVDTNNKKIVDGK 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
           L      G    K L       I + S N   +P   V +++I  I R+ W S
Sbjct: 181 LYAIDHGGLKRIKQLFRMPNNMISVRSFNKDEFPDQDVRINEITVIGRLFWYS 233


>gi|315499847|ref|YP_004088650.1| transcriptional repressor, lexa family [Asticcacaulis excentricus
           CB 48]
 gi|315417859|gb|ADU14499.1| transcriptional repressor, LexA family [Asticcacaulis excentricus
           CB 48]
          Length = 235

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 13/230 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-- 50
           M +   +++   I    +   ++PS         LA K+G+        +  G   R   
Sbjct: 1   MLTTKQRELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHR-LITALEERGFIRRLAH 59

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R  + E I     AT     +             +    +P               G   
Sbjct: 60  RARALEVIKLPDQATTAAPPRGRQAFVPQVVEGTRPAAPVPASKPANDEGRELPLLGKIA 119

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
            G     +G    R     I+    +    + +  SM+      GD +I+  +     G+
Sbjct: 120 AGVPIEALGAERDRIRVPEIFVGSGEHYLLEIEGDSMINAGILDGDYVIIKKSDSAQSGE 179

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++          K L  +   SI L + N  Y        ++    +++
Sbjct: 180 IVVALVDGDTATLKRLRKKGA-SIALEAANPAYKTRIYNADEVAVQGKLV 228


>gi|223935627|ref|ZP_03627543.1| transcriptional regulator, XRE family [bacterium Ellin514]
 gi|223895635|gb|EEF62080.1| transcriptional regulator, XRE family [bacterium Ellin514]
          Length = 222

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   + K            H  LT + L    G+        ++              +F
Sbjct: 1   MKELTEK-----FREFRRLHGNLTQAELGEMLGVTGNYIYLIEKGIKRPSK---GLTKLF 52

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + + AT   +     +       T    +          G            G   +   
Sbjct: 53  ESMYATLPQMGAQPGIHPPINSLTSSGLRTTINPLTFIPGRNSAPVVSWAAAGTAHDYAD 112

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTG 178
           +           +          +  SM P    GD++  +   +   G+ ++ +     
Sbjct: 113 LANQIEEVVYTDSRDPNAFALIVEGDSMYPEIAAGDVITFSPNSEPRNGNIVVARLAENH 172

Query: 179 DIVAKVLISRR--GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++ K        GR+I L S N  YP  T+      +I   +
Sbjct: 173 GVLVKRFRRTGPEGRTIILESTNQDYPPITLPAEAFRFIYPAV 215


>gi|163760898|ref|ZP_02167977.1| putative LexA repressor (SOS regulatory protein) [Hoeflea
           phototrophica DFL-43]
 gi|162281942|gb|EDQ32234.1| putative LexA repressor (SOS regulatory protein) [Hoeflea
           phototrophica DFL-43]
          Length = 238

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 62/232 (26%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +    ++   I+   +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQHELLLFINERMKESGIPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLP----FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                + K+  +   ++                   +  +                  G 
Sbjct: 61  ARALEVIKLPDSYQNSLQPRRGFSPSVIEGSLGKAPEPVRRSQAANDEAPQVAEVPMMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G   + +                 +    + +  SM+      GD +++ +    + 
Sbjct: 121 IAAGVPISAIQNNTHNVQVPIEMVGPGEHYALEVKGDSMIDAGIFDGDTVVIRNVSTASP 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 GDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 231


>gi|329120198|ref|ZP_08248867.1| cro/CI family prophage MuSo2 [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327463350|gb|EGF09670.1| cro/CI family prophage MuSo2 [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 217

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 11/215 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++ +   L  +  A +     +  N           + P  + I KIL+       
Sbjct: 7   ENVRKLIDDSGLNVAEFAERIEEKSSRVNDVLNG-----KQRPPFDMIEKILSVFQIDAN 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L+    +        ++   + ++    S G+         +  + +   +      G+
Sbjct: 62  WLITGHKNPNGLGNISDEYEYIPFYDVEVSAGYGADAYGAV-HPQSYLAFRKDWLRSRGL 120

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           Y      +  K +  SM P    GD L+++++  +     + +      +  K +     
Sbjct: 121 Y--PKDLSCVKARGDSMEPTINNGDTLLVDASRNMPRDGYIYVIRSADTLWVKRIQKHID 178

Query: 191 RSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222
            S+ L+S N  YP  T+      DI+ I +++  S
Sbjct: 179 NSLLLISDNGTYPPMTLRSDQHHDIQIIGQVVNIS 213


>gi|228968306|ref|ZP_04129303.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791383|gb|EEM38988.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 218

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 17/219 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I ++  +HNL+   L   AG+   + +  ++       + P   +I KI       
Sbjct: 3   IGKNIKKLRSKHNLSQKELGEIAGVSDKAVSTWEKG-----LKEPRMGAIQKIADHFKIL 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              +++   S        + +I          G                + VP   +  +
Sbjct: 58  KSDIIEDQDSKITHIRPNQPKIENNCKAVPLLGAIAAGTPLEMLTVEEWINVPIEITDCH 117

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                       +    SM  +     + +++  +++  GD   +     D   K     
Sbjct: 118 P------HAFLLRVVGDSMNKIVPPDALALIDPDVEIKNGDIAAVAVNGFDATLKRFYKF 171

Query: 189 RGR-SIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221
           +   +++  S N  +     +      + +    +++W 
Sbjct: 172 QDGITLEPESYNSEHKTQFYDSKTQEHTPVVVKGKLVWY 210


>gi|328543728|ref|YP_004303837.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [polymorphum gilvum SL003B-26A1]
 gi|326413472|gb|ADZ70535.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Polymorphum gilvum SL003B-26A1]
          Length = 237

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 58/232 (25%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQYELLMFIHERLKETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FK----------ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
            +          I         +       +G       +        P+G       G 
Sbjct: 61  ARAMEVVRLPESIAPGLGSPRSRGFSPSIIEGSLGRAPAQAGRTEAGDPAGMATIPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G     +               + +    + +  SM       GD +++        
Sbjct: 121 IAAGVPIEAIQTHSHSISVPPELLGRGEHYALEVRGDSMIEAGILDGDTVLIRKTDSAES 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K L  +   SI L + N  Y         +    R++
Sbjct: 181 GDIVVALVDDEEATLKRLRKKGP-SIALEAANPAYETRIFGPGRVRIQGRLV 231


>gi|284992288|ref|YP_003410842.1| LexA family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284065533|gb|ADB76471.1| transcriptional repressor, LexA family [Geodermatophilus obscurus
           DSM 43160]
          Length = 263

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 23/220 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            +++ E I    ER    PS   +    GL   S    +   ++ +    R P+      
Sbjct: 55  QRRVLEVIRDSIERRGYPPSVREIGEAVGLSSASSVAHQLSVLQKKGWLRRDPNRPRALD 114

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    +        +    G         +PL+    +G                +   +
Sbjct: 115 VRLPGDSAGASAPTVVAPVGAEETPAPTYVPLVGRIAAGGPV------LAEQAVEDVFPL 168

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P            +      K    SM       GD +++        G+ +      G+
Sbjct: 169 PRELVG-------EGTLFMLKVTGDSMVEAAICDGDWVVVRQQPTAENGEIVAAMID-GE 220

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    R    + L+  N  Y        D   + R++
Sbjct: 221 ATVKTYKRR-DGHVWLLPHNPAYEPI--PGDDATVLGRVV 257


>gi|170723125|ref|YP_001750813.1| putative phage repressor [Pseudomonas putida W619]
 gi|169761128|gb|ACA74444.1| putative phage repressor [Pseudomonas putida W619]
          Length = 259

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 65/256 (25%), Gaps = 46/256 (17%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E I        LT   LA K G+  T+ ++ +    +   R     +I      ++ 
Sbjct: 2   KLSERIRAARLHAGLTQRDLAEKIGIAQTAISQLESGKTQ---RSSYLMAIASTCGVSSA 58

Query: 68  TICQLLDLP--------------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            + +                       +T  +  K +       +           P  +
Sbjct: 59  WLAEGWGTMLRDAASVEAFLNSGDHPLKTAHENAKPVYDPGVAVALEPIQAWDDDTPLED 118

Query: 114 KWNTVGVPEIRSPHNGIY-----------------------AIQTQDTRHKTQDTSMLPL 150
               +          G                             Q         SM P+
Sbjct: 119 DEVEIPFLREVELSAGSGRTVIERSSTAKLRFGKRSLRAHNVQFDQAVCVVVSGNSMEPV 178

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEM 209
              G  + +N         ++      G +  KVL    G  +   S N   +P +T   
Sbjct: 179 LPDGSTVGVNIGQTQIVDGKMYAIKHDGQLRVKVLYRVPGGGVRFRSFNQSEHPDETYTA 238

Query: 210 SD-----IEWIARILW 220
            +     IE I R+ W
Sbjct: 239 DEMAEKSIEIIGRVFW 254


>gi|167465058|ref|ZP_02330147.1| SOS-response transcriptional repressor [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 211

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 66/222 (29%), Gaps = 24/222 (10%)

Query: 1   MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M     K+I+ A I R+ +   +T   LA+  G+  ++ +  ++   +   R    E + 
Sbjct: 1   MDDKKIKEIFAANIKRLRKSRGMTQGDLAKILGVGISTVSDWEK--AKKYPRAGVIEKLS 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +       +  +                +   +  +           G    GN      
Sbjct: 59  QYFDMPKSSFFE---------------VQGNAIEVYIEEDLVKIPIIGKVSCGNGVIAYE 103

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E        +         + +  SM+      GD++++     V  G+   +     
Sbjct: 104 EIEGYEDTPSSWVRGADFFYLRAKGDSMINARIFDGDLVLIRKQNFVEEGEIAAVLID-D 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIAR 217
           ++  K +       + L S N  Y           +I+ + +
Sbjct: 163 EVYLKRVYKH-DDYLRLESENPTYKPIYKTKENCSEIKILGK 203


>gi|59714374|ref|YP_207148.1| DNA-binding protein RDGA [Vibrio fischeri ES114]
 gi|59482651|gb|AAW88260.1| DNA-binding protein RDGA [Vibrio fischeri ES114]
          Length = 203

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 20/217 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+I   +    +    +   LA    +  ++ ++ +R         P  E + ++    N
Sbjct: 2   KEISIRLKEKRKALRYSQRKLADLVNVTTSAISQWEREETT-----PKGEHLVRLAEVLN 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T+  L+          +             S   GF       T      + +P+    
Sbjct: 57  CTVQWLVGTEDDICEYVDIPF----YEQVKASAGHGFLCECKNVT-----YISLPKAL-- 105

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
               Y              SM P+     +L+++S+ +      + +  +   I  K LI
Sbjct: 106 --FKYFNVKDLLAITAHGDSMEPVLNDDALLVIDSSKKQIRDGSMYVIRQGDLIRVK-LI 162

Query: 187 SRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILWAS 222
           S     + L S N  Y  +  E   D+E + +++W S
Sbjct: 163 SLDNNGLKLKSYNQSYHDEIYEDYQDVEILGKVIWYS 199


>gi|257463935|ref|ZP_05628320.1| SOS-response transcriptional repressor, LexA [Fusobacterium sp.
           D12]
 gi|317061461|ref|ZP_07925946.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313687137|gb|EFS23972.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 214

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 7/209 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    E    + + LA+   +    +N  +R  ++     PS E + +++   +     
Sbjct: 6   YLKEKREELGYSQNKLAKALQITQPYYNSIERGEVKN---PPSEEILERMIELFSLNAKD 62

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                +        K     +      G            G         E      G+ 
Sbjct: 63  KEYFLYLAAVERTPKIILEKMKQMKEEGPAAIPLFPRISAGIGVFGEEEVEDYISIPGVR 122

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            ++ +    + +  SM P  R   I++    +Q++ G+        G+   K L  +   
Sbjct: 123 NLE-EVFSVRVKGDSMEPTIRNSSIIVCRQNMQIHNGEIGAFLVN-GEAFVKRLQVKSD- 179

Query: 192 SIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
            I LMS N  Y    +    +   + ++L
Sbjct: 180 YIVLMSDNPNYQPIYISPSDEFVSVGKVL 208


>gi|300023412|ref|YP_003756023.1| transcriptional repressor, LexA family [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525233|gb|ADJ23702.1| transcriptional repressor, LexA family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 239

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 16/234 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +   K +   I    +   + PS   +     L   +  ++      +R  I      
Sbjct: 1   MLTEKQKDLLMFIHERMQERGVPPSFDEMKDALDLRSKSGIHRLITALVERGFIRRLPHR 60

Query: 53  PSTESIFKILAA------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
                + K+         +          P     T  K+    P  +   + +      
Sbjct: 61  ARAIEVIKLPENQIAAATSATPAAPRGFQPSVITGTGPKQNVTPPPSHVIDARTVSVPVM 120

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165
           G    G   + +         +       +    + +  SM       GD +I+      
Sbjct: 121 GRIAAGTPISAIQNHTHDIAVSPDILTNGEHFALEVKGDSMIEAGIHDGDTVIVRRCNTA 180

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             GD ++      +   K L  ++G +I L + N  +         ++   R++
Sbjct: 181 ENGDIIVALVEGEEATLKRL-RKKGSTIALEAANPEFKTRIFGPDQVDIQGRLV 233


>gi|312114155|ref|YP_004011751.1| LexA family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219284|gb|ADP70652.1| transcriptional repressor, LexA family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 258

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +   K++   I+   E   + PS    K  L   S +   R  +    R      P  
Sbjct: 21  MLTPKQKQLLLYINERIEATGVPPSFDEMKEALHLKSKSGIHRLIMALEERGFIRRLPHR 80

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-------- 107
               +++      +    D       T  +  +       P +      D G        
Sbjct: 81  ARALEVMKMPERRVGFEADRRRGFMPTVIEGARRSSFEEAPQAPFIRDRDDGGISVPVMG 140

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166
               G   + +            Y         + +  SM     ++GD ++L       
Sbjct: 141 RIAAGVPRSAIEDHSHVLVMPPEYLSTGDHFALEVRGDSMIEAGIQEGDTVVLKKTAAAE 200

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K L  +RG+SI L   N  Y         ++   +++
Sbjct: 201 SGDIVVALIDDEEATLKRL-RKRGQSIALEPANPAYETRIFGPDRVKIQGKLV 252


>gi|260433608|ref|ZP_05787579.1| LexA repressor [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417436|gb|EEX10695.1| LexA repressor [Silicibacter lacuscaerulensis ITI-1157]
          Length = 232

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 13/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +   + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRVQADGVPPSFDEMKTALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +        +          + +             +      G    G
Sbjct: 61  ARAIEIVKLPESLGGEP--TVGFKPRVIEGDKPEGPRPANFESVSVDALELPVMGRIAAG 118

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                +          G   + Q      + +  SM+      GDI+++      + GD 
Sbjct: 119 VPIEAISHVSHHVAVPGTMVSGQGDHYALEVRGDSMIDAGINDGDIVVIRETATADNGDI 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    R G +I L + N  Y    +    ++   R++
Sbjct: 179 VVALVEDQEATLKRFFRR-GNAIALEAANPAYETRVLPNDKVKVQGRLV 226


>gi|298369854|ref|ZP_06981170.1| peptidase, S24 family [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281314|gb|EFI22803.1| peptidase, S24 family [Neisseria sp. oral taxon 014 str. F0314]
          Length = 233

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 73/229 (31%), Gaps = 19/229 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +++EA +++        S LAR     P + N  +     G +     E+   I A+   
Sbjct: 7   RLYEAAEKLKGIKG--QSNLARFLNTSPQTLNNWE---SRGVSSKGLIEAAKAIGASVEW 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP------PSGSGGFFDSGVFPTGNKW-NTVG- 119
                  +  S    +          +              F+       GN + + +  
Sbjct: 62  LETGTGSMDGSHTPESNATVIGTVDAWDSRTPLSGDDCEVPFYKDIHLAAGNGFSDDIED 121

Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                +   ++                    SM P++  G  L +N+A +     ++   
Sbjct: 122 YNGYKLRFSKATLRRHGISPAAVICVCADGDSMEPVFPDGATLGINTADKTVKDGKIYAV 181

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222
              G +  K+L    G  I + S N   YP +  + +DI  I R+ W S
Sbjct: 182 NHGGLLRTKILQKLPGNKIRIRSYNAEAYPDEEADAADINIIGRVFWWS 230


>gi|319891834|ref|YP_004148709.1| Phage repressor [Staphylococcus pseudintermedius HKU10-03]
 gi|317161530|gb|ADV05073.1| Phage repressor [Staphylococcus pseudintermedius HKU10-03]
          Length = 234

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 28/240 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    +  I + I R  +  N++   LA    + P++ +             PS   I +
Sbjct: 1   MNKERNIIIAKNIRRFLDDSNMSQKKLAELINIKPSTLSDYLNLRSN-----PSHGVIQR 55

Query: 61  ILAATNETICQLLDLPFS--------------------DGRTTEKKEKEIPLLYFPPSGS 100
           I          +                          D    +  E+   +L+      
Sbjct: 56  IADVFGVGKSDIDTTYKDENSITSIYDKLTPPRQKRVLDFANEQLNEQNNKVLHINSHNV 115

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
                +             +  +         I   D   +    SM PL+   +I+ ++
Sbjct: 116 ISEEVAVYGYASAGTGETLIDGVEFTTQYNGHIPNHDFALQVNGDSMEPLFEDKEIIFVD 175

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
              Q+N G   +     G+   K +     + I L+SLN  YP    + S DI+   +++
Sbjct: 176 KTKQINSGQIGIFVID-GEAYLKKVF-ISDKGIRLVSLNSKYPDLHFDSSYDIKVAGKVI 233


>gi|257467041|ref|ZP_05631352.1| SOS-response transcriptional repressor, LexA [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918178|ref|ZP_07914418.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692053|gb|EFS28888.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 215

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 65/209 (31%), Gaps = 7/209 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    E    + + LA+   +    +N  +R  ++     PS E + +++   +     
Sbjct: 6   YLKEKREELGYSQNKLAKALQITQPYYNSIERGEVKN---PPSEEILERMIGLFSLNEKD 62

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                +        K     +      G            G         E      G+ 
Sbjct: 63  AEYFLYLAAVERTPKIILEKMKQIKGEGPSAIPLFPRISAGIGVFGEEEVEDYISIPGVR 122

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            ++ +    + +  SM P  +   I++    +QV+ G+        G+   K L  +   
Sbjct: 123 NVE-EVFSVRVKGDSMEPTIKNSSIIVCRQNMQVHNGEIGAFLVN-GEAFVKRLQIKPD- 179

Query: 192 SIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            + LMS N  Y    +    +   + ++L
Sbjct: 180 YVVLMSDNPNYQPIYISPNDEFVSLGKVL 208


>gi|254360461|ref|ZP_04976610.1| possible LexA family repressor/S24 family protease [Mannheimia
           haemolytica PHL213]
 gi|153091001|gb|EDN73006.1| possible LexA family repressor/S24 family protease [Mannheimia
           haemolytica PHL213]
          Length = 218

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 23/221 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + + + I    +   LT   LA    G+   + ++ +    +     P++E+I  +    
Sbjct: 4   QTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTTK-----PNSENILDLSTVL 58

Query: 66  NETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              I  L      S+         ++PL+ +  +G     D      G+ +  +      
Sbjct: 59  QCDISWLLRGNGESNVLPASLGMTKVPLISYIQAGQWTGIDDFRETCGD-YEYI------ 111

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                   +       + +  SM P + +GD +I++  +Q + G+ +       +   K 
Sbjct: 112 ---LTDLEVSEDAFALEIKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAINGDYEATFKK 168

Query: 185 LISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                       +  +L++LN  Y   +    +I  I  ++
Sbjct: 169 YRPLEDLDEYGRQHFELIALNPDYHKLSTLKQEIRIIGTMV 209


>gi|110641328|ref|YP_669058.1| phage-related repressor protein [Escherichia coli 536]
 gi|110342920|gb|ABG69157.1| phage-related repressor protein [Escherichia coli 536]
 gi|324013243|gb|EGB82462.1| peptidase S24-like domain protein [Escherichia coli MS 60-1]
          Length = 230

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + ++   E+  ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 1   MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L           ++  K                       G         E+
Sbjct: 55  ALGVRTEWLSSGIGPMRNDGQQSGKPAVSY---SKYFKIDVLDIEVSAGPGVINREFVEV 111

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                  +                    +  SM      GD+L ++  ++   GD +   
Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
                   K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219


>gi|293413803|ref|ZP_06656452.1| regulatory protein CI bacteriophage origin [Escherichia coli B185]
 gi|291433861|gb|EFF06834.1| regulatory protein CI bacteriophage origin [Escherichia coli B185]
          Length = 242

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 23/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + ++   E+  ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 13  MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 66

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L           ++  K        P              G         E+
Sbjct: 67  ALGVRTEWLSSGIGPMRNDGQQLGKPTAN---HPKYFKIDVLDIEVSAGPGVINREFVEV 123

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                  +                    +  SM      GD+L ++  ++   GD +   
Sbjct: 124 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 183

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
                   K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 184 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 231


>gi|15837298|ref|NP_297986.1| phage-related repressor protein [Xylella fastidiosa 9a5c]
 gi|9105580|gb|AAF83506.1|AE003913_2 phage-related repressor protein [Xylella fastidiosa 9a5c]
          Length = 221

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 24/221 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI   I    E   ++ + LA+ AG+  ++ +  +           ST ++ KI      
Sbjct: 5   KIGSRIRAERENQGISRTELAKFAGIATSTLSDLELGHSR------STTALHKIAERLGV 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +   L          T         L +      G         G+       PEI    
Sbjct: 59  SAQWLETGRGEKSTDTFPAPISNNSLGYVRVQQMGEAG-----MGDGRENEDFPEIVRTV 113

Query: 128 N----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                      G      +      +  SM P    G+++++++      GD L +    
Sbjct: 114 EYSEAFLRSLLGFLPPPGRLVLVTGKGDSMTPTIAPGEVVLVDTGTHTFEGDGLYLVNVG 173

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                K L  R    + ++S N   P        I    ++
Sbjct: 174 HGHQIKRLQDR--GRLFVVSDNHLMPSFEFPEEGI-IGGKV 211


>gi|257453296|ref|ZP_05618595.1| SOS-response transcriptional repressor, LexA [Fusobacterium sp.
           3_1_5R]
 gi|317059828|ref|ZP_07924313.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313685504|gb|EFS22339.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 215

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 65/209 (31%), Gaps = 7/209 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    E    + + LA+   +    +N  +R  ++     PS E + +++   +     
Sbjct: 6   YLKEKREELGYSQNKLAKALQITQPYYNSIERGEVKN---PPSEEILERMIGLFSLNEKD 62

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                +        K     +      G            G         E      G+ 
Sbjct: 63  AEYFLYLAAVERTPKIILEKMKQIKGEGPAAIPLFPRISAGIGVFGEEEVEDYISIPGVR 122

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            ++ +    + +  SM P  +   I++    +QV+ G+        G+   K L  +   
Sbjct: 123 NVE-EVFSVRVKGDSMEPTIKNSSIIVCRQNMQVHNGEIGAFLVN-GEAFVKRLQIKPD- 179

Query: 192 SIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            + LMS N  Y    +    +   + ++L
Sbjct: 180 YVVLMSDNPNYQPIYISPNDEFVSLGKVL 208


>gi|92113491|ref|YP_573419.1| putative phage repressor [Chromohalobacter salexigens DSM 3043]
 gi|91796581|gb|ABE58720.1| putative phage repressor [Chromohalobacter salexigens DSM 3043]
          Length = 227

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 20/218 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I    +R  L+ +  A  AG+  T+    ++       R P TE +     A +  
Sbjct: 12  VGERIKGERKRLGLSQTAFANLAGVGKTTQINYEKGT-----RNPDTEYLA----ALDSA 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSP 126
              +  +      +    + + P+       S           G         +      
Sbjct: 63  GVDVYYVLTGRKSSGGSSDVQAPVEEPLDGYSPVPMYDIEAAAGAGRLIEHENIESTLYF 122

Query: 127 HNGIYAIQT----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                + +          K +  SM    + GD +I++ +      D + +     +   
Sbjct: 123 QTQALSAEGLDPAHLIGAKVRGDSMGSTLQDGDRVIVDCSQ--RTPDGVFLLRVGEEYRI 180

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIAR 217
           K +    G +  L+S N  Y  + ++     D+E + R
Sbjct: 181 KRVQRVAGGAWLLISDNHAYEKEMIKPDEMQDVEILGR 218


>gi|110633994|ref|YP_674202.1| LexA repressor [Mesorhizobium sp. BNC1]
 gi|122965964|sp|Q11HT8|LEXA_MESSB RecName: Full=LexA repressor
 gi|110284978|gb|ABG63037.1| SOS-response transcriptional repressor, LexA [Chelativorans sp.
           BNC1]
          Length = 236

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 13/231 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +    ++   I    +   + PS    K  LD  S +   R       R      P+ 
Sbjct: 1   MLTRKQHELLLFIHARLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----- 110
               ++L   +     L           E  +        P + +         P     
Sbjct: 61  ARALEVLRLPDSIAPGLAAPRKFSPSVIEGGQGRSSPAPRPAANNDDETSVVSIPVMGRI 120

Query: 111 -TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168
             G   + +                 +    + +  SM       GD +I+      N G
Sbjct: 121 AAGVPIDAIQHRTHSIGVPPDMITGGEHYALEVKGDSMIEAGIFDGDTVIIRQTQAANPG 180

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++      +   K    +   SI L + N  Y         ++   R++
Sbjct: 181 DIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGRLV 230


>gi|126735652|ref|ZP_01751397.1| LexA repressor [Roseobacter sp. CCS2]
 gi|126714839|gb|EBA11705.1| LexA repressor [Roseobacter sp. CCS2]
          Length = 228

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 60/223 (26%), Gaps = 5/223 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +     + E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-FFDSGVFPTGNKWNT 117
            + L              F+       K    P+   P           G    G     
Sbjct: 61  ARALEIVKLPDAMQAKTGFTPRVIDGDKPDSTPVAAIPVDNGSVDLPMMGRIAAGVPIEA 120

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           +                      + +  SM+      GD++++      + GD ++    
Sbjct: 121 ISEASRNVSVPQSMVGAGDHYALEVKGDSMIDAGINDGDVVVIRETTVADNGDIVVALVE 180

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K    R G +I L + N  Y         ++   R++
Sbjct: 181 GHEATLKRF-RRNGSAIALEAANPAYETRVFRDDQVKVQGRLV 222


>gi|308751810|gb|ADO45293.1| transcriptional regulator, XRE family [Hydrogenobacter thermophilus
           TK-6]
          Length = 311

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 69/220 (31%), Gaps = 15/220 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + +   L+      + G    +    +   ++         ++  I +    
Sbjct: 87  NIHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQ-----IPDTALKLIASTFGV 141

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT----VGVPEI 123
           +   L           +   +EI                 V   G  +      + V  +
Sbjct: 142 SYEWLKTGQGEMWGREKLSLEEIIEREQRKLLESKIKVPVVGKAGAGFPHSPSDIEVIGV 201

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGD 179
                  Y  + +    +    SM P   +GD ++  +       +  G  ++++  +G+
Sbjct: 202 VFVSKSPYLKEGKIFAVQVSGDSMHPALTEGDYVVFQTYEGDGSDIPNGKIVVVRNHSGE 261

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++ K L+     ++ L   N  YP    + ++ E + RI+
Sbjct: 262 LLVKRLLKM-NGTVLLAGDNPKYPPIFPQQAEAEGL-RIV 299


>gi|269219559|ref|ZP_06163413.1| repressor LexA [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210801|gb|EEZ77141.1| repressor LexA [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 237

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 13/223 (5%)

Query: 6   HKKIWEAIDR--MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57
            K++  A+    +  R+  T   +A + G   TS  K +   +E +       R P T  
Sbjct: 13  QKEVLNALRSELLKNRYAPTIREIADRCGFSSTSSVKYQLDALEDKGYIVRDPRRPRTIL 72

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + ++                   R    +E +     F    S      G    G+    
Sbjct: 73  LTELGLENTHRRLYADYTSAGIPRGAAAEEPKTSAEDFHVDPSVNVPVVGRIAAGSPILA 132

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
             V E   P         +    K    SM       GD +++        G+ +     
Sbjct: 133 DQVVEEVLPLPRSLTGDGELFMLKVVGDSMVEAAICDGDWVVIRRQPVAENGEIV-AAMI 191

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   KVL  + G ++ L+  N  Y        D E + R++
Sbjct: 192 EGEATVKVLQRKDGHTL-LLPRNSEYRPI--PADDAEVLGRVV 231


>gi|329113360|ref|ZP_08242141.1| LexA repressor [Acetobacter pomorum DM001]
 gi|326697185|gb|EGE48845.1| LexA repressor [Acetobacter pomorum DM001]
          Length = 220

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 55/220 (25%), Gaps = 17/220 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57
           M +    K+   ID   ++   +PS   +    GL   +  ++      E          
Sbjct: 5   MLTRKQHKLLLFIDSHLKQTGFSPSFDEMREAMGLRSKSGIHRLISGLEE---------- 54

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             +     +    + L++                    P + +      G    G     
Sbjct: 55  --RGFLRRHHHRARALEVIQLPEMQELPPNVVRASFTRPKAETVRIPLYGRIAAGLPIEA 112

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           V                      +    SM+      GD +I+    Q   G  ++    
Sbjct: 113 VPDTSHVLTVPTEMLGTGDYYALEVAGDSMVDAGILDGDNVIIRRTDQAENGQIVVALID 172

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
             ++  K L  + G  I L   N  Y    V    +    
Sbjct: 173 EHEVTLKRLRRK-GNMIALEPANSSYETRIVPAEKLRIQG 211


>gi|257463340|ref|ZP_05627736.1| putative prophage repressor [Fusobacterium sp. D12]
 gi|317060917|ref|ZP_07925402.1| SOS-response transcriptional repressor [Fusobacterium sp. D12]
 gi|313686593|gb|EFS23428.1| SOS-response transcriptional repressor [Fusobacterium sp. D12]
          Length = 198

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 71/212 (33%), Gaps = 27/212 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  + E   L+   L+ K  +  T+    +        R  + E + +IL A N + 
Sbjct: 5   GKKLKLLRESKGLSQEELSDKLSVTKTTIGNYENG-----RRALTLEKLAEILEALNSSF 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +   L        +                     +G+    N  + + +P+  S    
Sbjct: 60  NEFFSLKELCTEDIKIPIVSK-----------VSAGTGLLVEENIVDYLPIPKELSN--- 105

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                  D     +  SM P  + GDI ++    ++  G+ ++     G+   K      
Sbjct: 106 -----KCDFATFVEGNSMFPDVKNGDIALVKMDCEIESGNIVI-FSLNGNSYIKKYHYNP 159

Query: 190 -GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
               I  +S N  Y   +V E  +++ I R++
Sbjct: 160 FSNKITFISSNKEYENISVMEGDELKVIGRVI 191


>gi|26249039|ref|NP_755079.1| putative repressor protein of prophage [Escherichia coli CFT073]
 gi|331651509|ref|ZP_08352529.1| repressor protein C2 [Escherichia coli M718]
 gi|26109446|gb|AAN81649.1|AE016765_51 Putative repressor protein of prophage [Escherichia coli CFT073]
 gi|331050782|gb|EGI22839.1| repressor protein C2 [Escherichia coli M718]
          Length = 208

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 69/218 (31%), Gaps = 24/218 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + + I  +      +   L +  G+   +    ++         P  E++ K+    N
Sbjct: 2   ETVGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINT-----PGGEALSKLAKFFN 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +    +              + +P++ +  +G      +               E+   
Sbjct: 57  TS-IDYILYGAEFEGKLVTNMRRVPVISWVQAGQFTECRAAEV----------FSEVDKW 105

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDI 180
            +    +       + +  SM     LP   +G  +I++   +   G  ++ +   T + 
Sbjct: 106 VDTSLKVGDNSFALEVKGDSMTNPNGLPTIPEGATVIVDPDAEPRHGKIVIARLDGTNEA 165

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K L+    +   L+ LN  YP   +  + +  I  +
Sbjct: 166 TVKKLVIDGPQKF-LVPLNPRYPNIPINGNCL-IIGVV 201


>gi|302751894|gb|ADL66071.1| phage transcriptional regulator [Staphylococcus aureus subsp.
           aureus str. JKD6008]
          Length = 242

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 76/246 (30%), Gaps = 39/246 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+SFS       ++R+  + +++ S LA    ++ T+  + ++       R P  + + +
Sbjct: 8   MSSFS-----SNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGI-----RSPKLDKLPE 57

Query: 61  ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-- 110
           I          L+             +  +     ++  +L +  +      +       
Sbjct: 58  IANVFGVKPLDLIHDMDDSKIIEEIHNVSSQLTPPRQSNVLKYATNQLEEQNNDSDNLVD 117

Query: 111 ----------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
                                      E  S       +   D   K    SM PL++ G
Sbjct: 118 FNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNG 177

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213
            I+ +  +  +  G   +     GD   K +       + L+SLN  Y      +   + 
Sbjct: 178 QIIFIEKSHTIKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLHFYDNESVR 235

Query: 214 WIARIL 219
            + +++
Sbjct: 236 LVGKVI 241


>gi|237737791|ref|ZP_04568272.1| repressor [Fusobacterium mortiferum ATCC 9817]
 gi|229419671|gb|EEO34718.1| repressor [Fusobacterium mortiferum ATCC 9817]
          Length = 229

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 21/223 (9%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    E   ++ +  A+ AG+  + +N  +R  ++     PS E + K ++    T  +
Sbjct: 6   YLKVRREALGISQNKFAKMAGITQSYYNGIERGEVKN---PPSEEILDKFVSLLLLTPSE 62

Query: 72  --------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                          + L      + EK+  +  ++    + +           G    T
Sbjct: 63  GEKLKYLAAIERTPAIILNEIKRLSDEKELSKRQVIKDISNNNTLVPLFSRISAGIGVIT 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              P       GI            +  SM P  +   I+I     ++  G+ +      
Sbjct: 123 DEEPIDYISLPGI-KNTENVFAINVKGDSMEPTIKNQSIIICRQGSELRDGE-VGAFLVN 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           G+   K +         L+S N  Y    V    + + I ++L
Sbjct: 181 GESFVKRI-KVTKNFFALLSDNPNYQPIYVYPQDEFKVIGKVL 222


>gi|209917763|ref|YP_002291847.1| phage transcriptional regulator [Escherichia coli SE11]
 gi|209911022|dbj|BAG76096.1| phage transcriptional regulator [Escherichia coli SE11]
 gi|315614557|gb|EFU95200.1| helix-turn-helix family protein [Escherichia coli 3431]
          Length = 230

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + ++   E+  ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 1   MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L           ++  K                       G         E+
Sbjct: 55  ALGVRTEWLSSGIGPMRNDGQQSGKPAV---SHSKYFKIDVLDIEVSAGPGVINREFVEV 111

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                  +                    +  SM      GD+L ++  ++   GD +   
Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
                   K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219


>gi|331646411|ref|ZP_08347514.1| transcriptional activator-regulatory protein [Escherichia coli
           M605]
 gi|331045163|gb|EGI17290.1| transcriptional activator-regulatory protein [Escherichia coli
           M605]
          Length = 230

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 23/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + ++   E+  ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 1   MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L           ++  K                       G         E+
Sbjct: 55  ALGVRTEWLSSGIGPMRNDGQQSGKPAVN---HSKYFKIDVLDIEVSAGPGVINREFVEV 111

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                  +                    +  SM      GD+L ++  ++   GD +   
Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
                   K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219


>gi|323938497|gb|EGB34748.1| peptidase S24 [Escherichia coli E1520]
          Length = 230

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 23/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + ++   E+  ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 1   MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L           ++  K        P              G         E+
Sbjct: 55  ALGVRTEWLSSGIGPMRNDGQQSGKPAAN---HPKYFKIDVLDIEVSAGPGVINREFVEV 111

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                  +                    +  SM      GD+L ++  ++   GD +   
Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
                   K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219


>gi|59801483|ref|YP_208195.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae FA 1090]
 gi|59718378|gb|AAW89783.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae FA 1090]
          Length = 215

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 58/218 (26%), Gaps = 28/218 (12%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86
           +A+ A +  ++    +        R     +I K+    + +   L     S        
Sbjct: 1   MAKLAEVSQSTIAALESG------RNKKATNIAKLAKILDVSAFWLETGEGSRTAPALIN 54

Query: 87  EKEIPLLYFPPSGSG---------------GFFDSGVFPTGNKWNTVG------VPEIRS 125
                 +                        +     F  G     +       +P  +S
Sbjct: 55  PDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDYNGYRLPFGKS 114

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                               SM     +   + +++        ++    + G    K L
Sbjct: 115 TLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYL 174

Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
           I + G S+ + S N   YP +T  +  +  I R+ W S
Sbjct: 175 IRQPGNSVLIRSHNSGFYPDETAPLDSLTVIGRVFWWS 212


>gi|37526812|ref|NP_930156.1| hypothetical protein plu2922 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786244|emb|CAE15296.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 212

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 16/210 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E +        LT + LA   G    S  + ++   + R R+     + ++  A   +
Sbjct: 3   IAERVKTRRIEMGLTQTELADLIGTKQQSIEQLEKGKTK-RPRF-----LPELAVALQCS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  LL            K++EI     P +G        V       + V          
Sbjct: 57  VSYLLYGTE-------DKKEEIEYAGKPKNGLVRVIGEAVLGIDGAVDMVEFHAGWL--- 106

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            I +        K +  SM P  + G+ +++     V+ GD + ++   G  + K++   
Sbjct: 107 RICSTDHDAYGLKVKGDSMWPRIQSGEFVVIEPNTPVHPGDEVFVRTNNGHNMIKIMNIT 166

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           R       S+N  +   T+  +++  I  +
Sbjct: 167 RNGDYQFSSINSDHRPITIPKNNVIMIHYV 196


>gi|257426151|ref|ZP_05602567.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428811|ref|ZP_05605206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431422|ref|ZP_05607796.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434133|ref|ZP_05610484.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257437044|ref|ZP_05613085.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914858|ref|ZP_06322639.1| probable transcriptional repressor [Staphylococcus aureus subsp.
           aureus M899]
 gi|282925355|ref|ZP_06333011.1| hypothetical protein SARG_02518 [Staphylococcus aureus subsp.
           aureus C101]
 gi|293507872|ref|ZP_06667714.1| hypothetical protein SCAG_02388 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510844|ref|ZP_06669544.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
           M809]
 gi|293545444|ref|ZP_06672120.1| probable transcriptional repressor [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271059|gb|EEV03228.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274455|gb|EEV05967.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277868|gb|EEV08532.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281059|gb|EEV11203.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283638|gb|EEV13764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312989|gb|EFB43389.1| hypothetical protein SARG_02518 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321252|gb|EFB51582.1| probable transcriptional repressor [Staphylococcus aureus subsp.
           aureus M899]
 gi|290919755|gb|EFD96827.1| probable transcriptional repressor [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094935|gb|EFE25203.1| hypothetical protein SCAG_02388 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466316|gb|EFF08842.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
           M809]
          Length = 210

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 77/225 (34%), Gaps = 23/225 (10%)

Query: 3   SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              +K+I    I R+ + +N+  + L+R   +  T+ +       +   R    E + K 
Sbjct: 1   MLGNKEIMAKNISRLMKENNVDRNKLSRDLKISYTTLSDWIN--AKTYPRIDKIEMLAKY 58

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                 ++ +           ++  + +   +   P  S       ++   N  + +   
Sbjct: 59  FGVEKSSLVE---------SPSKIVQLDTLPVKKIPVVSKISAGMPIYAEENLIDYIYF- 108

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                     +   ++   +    SM  L+++GD++++     V  G   ++     +  
Sbjct: 109 -----ATKNLSSNKEEFGLQVSGDSMDKLFQEGDVVVVEKDSTVENGQLGVVLVNGYNGT 163

Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDTVEMSD-IEWIARILWASQ 223
            K +       I L+    N  +        D I+ + R++ ASQ
Sbjct: 164 VKRIRY-NNDQIILIPESNNPSHYPQVYGKDDEIKIVGRVV-ASQ 206


>gi|325271879|ref|ZP_08138337.1| putative phage repressor [Pseudomonas sp. TJI-51]
 gi|324102998|gb|EGC00387.1| putative phage repressor [Pseudomonas sp. TJI-51]
          Length = 276

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 67/270 (24%), Gaps = 57/270 (21%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF----------------------- 44
           ++ + +        LT + LA +AG+   S ++ +R                        
Sbjct: 2   ELKDRLKHARRLKGLTQTELAERAGIAQASISEIERGLSRSSSHLVKIAQICGVDALWLA 61

Query: 45  ---GIEGRNRWPST----ESIFKILAATNETICQL---------------LDLPFSDGRT 82
              G       P      E I K+ AA                            +D   
Sbjct: 62  EGVGSIPAPTEPGYALVGEEIQKLSAADMVRQMLAKTGSGLSEEARNRLLQAAEETDSPP 121

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI----------YA 132
            +   K                       G+   T   PE+                 + 
Sbjct: 122 GDGSAKVGASRGSAGDMIRIAHYDVRGAMGSGQVTHDYPEMLRDVRVSLRHLRELGLDFK 181

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                        SM P  +  D LI++  ++   GD +      G    K L       
Sbjct: 182 EPHHLKLVTGWGQSMAPTIKDRDPLIVDVTVREFVGDGVYFISWGGHEYIKRLQVADDEH 241

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARI--LW 220
            +++S N  +    +   +    A++  +W
Sbjct: 242 FEMISDNPKHKDRMIRKEETYIQAKVLYVW 271


>gi|332670100|ref|YP_004453108.1| transcriptional repressor, LexA family [Cellulomonas fimi ATCC 484]
 gi|332339138|gb|AEE45721.1| transcriptional repressor, LexA family [Cellulomonas fimi ATCC 484]
          Length = 253

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 60/220 (27%), Gaps = 20/220 (9%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRW----PSTESIFK 60
           + E I    E     PS   +    GL  P+S  ++      +G  R     P    + +
Sbjct: 39  VLETIRASVESRGYPPSMREIGEAVGLTSPSSVKHQLTVLERKGYLRRDPNRPRAIEVVQ 98

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              +         D   S    T    + +P   + P          +       +   +
Sbjct: 99  PDDSRGVGTWTAPDGSRSAFAPTGDDGERVPSPSYVPVVGRIAAGGPILAEQVVEDVFPL 158

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P                   +    SM+      GD +++        G+ +      G+
Sbjct: 159 PRQLVG-------DGDLFLLRVAGDSMVDAAICDGDWVVVRRQPVAENGEIVAAMID-GE 210

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K L  R    + LM  N  Y        +   + R++
Sbjct: 211 ATVKTL-RRADGHVWLMPHNAAYSPI--AGDEATILGRVV 247


>gi|87119734|ref|ZP_01075631.1| probable transcriptional regulator [Marinomonas sp. MED121]
 gi|86165210|gb|EAQ66478.1| probable transcriptional regulator [Marinomonas sp. MED121]
          Length = 244

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 67/232 (28%), Gaps = 16/232 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            ++  A+ +   + +   + LA++ G    + NK      + R     T SI   +    
Sbjct: 10  DRLLIALQKAGIQRHGAGAWLAKQTGTTVKAANKWLNGESQPRREKVHTISIATGVRTEW 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYF-------PPSGSGGFFDSGVFPTGNKWNTVG 119
                       +    +       +  +       P      FF       GN +N V 
Sbjct: 70  LEYGMGEMQTTQEENKQDNHLNLGHIDAWDSDTPLNPNEVEIPFFSEIELSAGNGFNNVL 129

Query: 120 ------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                 +    S  N            K    SM P+   G  + L+ +       ++  
Sbjct: 130 DIATQKLRFNVSTLNKAGVSSDTVACCKVNGDSMEPILPNGSTVGLDISQTKIQDGKMYA 189

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222
               G +  K L       + + S N  +  + +      D+  I R+ W S
Sbjct: 190 IEHGGMLRVKYLYRLPFNGLRIRSANPDHHDEELSGESALDVRVIGRVFWYS 241


>gi|46201430|ref|ZP_00208098.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Magnetospirillum magnetotacticum MS-1]
          Length = 235

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 58/231 (25%), Gaps = 14/231 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +    ++   ID       ++PS    K  LD  S +   R       R      +  
Sbjct: 1   MLTRKQYELLMFIDERLRATGISPSFDEMKDALDLKSKSGIHRLITGLEERGF-IRRLAH 59

Query: 61  ILAATNETICQLLDLPFSDGRT-----------TEKKEKEIPLLYFPPSGSGGFFDSGVF 109
              A             +                   ++ +      PS S      G  
Sbjct: 60  RARALEVVRLPENRHDQTLPPPAKAFAPNVIKGGFASQQLVGAPVAVPSDSVSLPLYGKI 119

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168
             G     +                        +  SM       GD +++ S      G
Sbjct: 120 AAGTAIEALSDHSRSIDIPASMLGSGNHYALTVEGDSMIEAGINDGDTVVIRSCDSAETG 179

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             ++      ++  K L  + G S+ L   N  Y    +    ++   R++
Sbjct: 180 TIVVALVDDTEVTLKRLRRK-GTSVALEPANKAYETRVLPPDRVKVQGRLV 229


>gi|260576320|ref|ZP_05844311.1| SOS-response transcriptional repressor, LexA [Rhodobacter sp. SW2]
 gi|259021391|gb|EEW24696.1| SOS-response transcriptional repressor, LexA [Rhodobacter sp. SW2]
          Length = 228

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 58/223 (26%), Gaps = 5/223 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++ + I    ER  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQLELLDFIKTRTERDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L                     +K +     +      +      G    G     +
Sbjct: 61  ARALEIIKLPEAMERPGFSPKVIQGDKVDPPRGAMPVDAVYAFELPVMGRIAAGVPIEAI 120

Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                     G   + +      + +  SM       GDI+++        GD ++    
Sbjct: 121 SEVSHHVAVPGSMLSGKGNHYALEVKGDSMIEAGINDGDIVVIREQNTAENGDIVVALVE 180

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K    R    I L + N  Y         ++   R++
Sbjct: 181 DSEATLKRFRRRGA-MIALEAANPAYETRVYADHLVKVQGRLV 222


>gi|103486322|ref|YP_615883.1| LexA repressor [Sphingopyxis alaskensis RB2256]
 gi|123380023|sp|Q1GUX2|LEXA_SPHAL RecName: Full=LexA repressor
 gi|98976399|gb|ABF52550.1| SOS-response transcriptional repressor, LexA [Sphingopyxis
           alaskensis RB2256]
          Length = 227

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 55/222 (24%), Gaps = 9/222 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWP--STE 56
           M +    ++   I +  +   ++PS   +    GL   S     R       R       
Sbjct: 1   MLTAKQHELLHFIQQRLDASGISPSFEEMKEALGLKSKS--GIHRLISALEERGFLRRLP 58

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +  + L            +  +     + ++    L     +        G    G    
Sbjct: 59  NRARALEVLKLPDTAKSVVTNNRDNVVQLRKAPSALKPIAANDIIEVPLHGRIAAGVPIE 118

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                E  +          +    +    SM       GD  ++  A     GD ++   
Sbjct: 119 AFEDHEQLA-VPAALLGSGEHYALEVSGDSMVEAGIFDGDYALIQKADTAREGDIVVALV 177

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
              D   K    R G+ I L   N  Y         +    R
Sbjct: 178 DGQDATLK-FFRREGKMIRLDPANSAYEPQRYPAERVIVQGR 218


>gi|222529484|ref|YP_002573366.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725]
 gi|222456331|gb|ACM60593.1| SOS-response transcriptional repressor, LexA [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 222

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I +  +     P+   +    GL  TS       R   +G   R PS     
Sbjct: 28  KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 87

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                      ++      +   P          +    N   T+ 
Sbjct: 88  EIVD---------------------EEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 126

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P                   + +  SM        DI+I+        GD ++      
Sbjct: 127 LPYDLVGTE-------DAFLLRVRGDSMIEAGIFDNDIIIVRRQNVAENGDIVVALID-D 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N       V+  D++ + +++
Sbjct: 179 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 216


>gi|71083618|ref|YP_266337.1| LexA repressor [Candidatus Pelagibacter ubique HTCC1062]
 gi|91761961|ref|ZP_01263926.1| LexA repressor [Candidatus Pelagibacter ubique HTCC1002]
 gi|123775507|sp|Q4FM55|LEXA_PELUB RecName: Full=LexA repressor
 gi|71062731|gb|AAZ21734.1| repressor LexA [Candidatus Pelagibacter ubique HTCC1062]
 gi|91717763|gb|EAS84413.1| LexA repressor [Candidatus Pelagibacter ubique HTCC1002]
          Length = 225

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 4/223 (1%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   K +   I++      ++PS    K  L+  S +   R       R        K
Sbjct: 1   MLTKKQKNLLLFINKKLRASGVSPSYEEMKDSLNLKSKSGIHRLISALEERGFIRRLAHK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             A     + +           +    K                  G    G     +  
Sbjct: 61  ARALEVIKLPETASANDIYNSFSPSVIKGGLDTENTNLNEMEIPVLGSIAAGTPVEAIQN 120

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              R P         Q    K Q  SM      +GD +I+  +   + G  ++      +
Sbjct: 121 EVSRIPLPSNLEKNGQYFGLKVQGDSMIEAGINEGDTVIIKRSDTADNGKIVVALIDEHE 180

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
            + K +  + G+++ L S N  Y         ++     +  S
Sbjct: 181 AMLKRIRRK-GKTVALESANRNYETKIFGPDRVKVQG--VLVS 220


>gi|258542190|ref|YP_003187623.1| LexA repressor [Acetobacter pasteurianus IFO 3283-01]
 gi|256633268|dbj|BAH99243.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636327|dbj|BAI02296.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639380|dbj|BAI05342.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642436|dbj|BAI08391.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645491|dbj|BAI11439.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648544|dbj|BAI14485.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651597|dbj|BAI17531.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654588|dbj|BAI20515.1| transcriptional regulator LexA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 216

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 55/220 (25%), Gaps = 17/220 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57
           M +    K+   ID   ++   +PS   +    GL   +  ++      E          
Sbjct: 1   MLTRKQHKLLLFIDSHLKQTGFSPSFDEMREAMGLRSKSGIHRLISGLEE---------- 50

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             +     +    + L++                    P + +      G    G     
Sbjct: 51  --RGFLRRHHHRARALEVIQLPEMQELPPNVVRASFTRPKAETVRIPLYGRIAAGLPIEA 108

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           V                      +    SM+      GD +I+    Q   G  ++    
Sbjct: 109 VPDTSHVLTVPAEMLGSGDYYALEVAGDSMVDAGILDGDSVIIRRTDQAENGQIVVALID 168

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
             ++  K L  + G  I L   N  Y    V    +    
Sbjct: 169 EHEVTLKRLRRK-GNMIALEPANSSYETRIVPAEKLRIQG 207


>gi|326622275|gb|EGE28620.1| repressor protein cI [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 232

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 24/232 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + + + +++  E   ++   LA+ +G+   +  +       G  +      I +
Sbjct: 1   MNIMKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVE 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I  A       L        +         P      +             G        
Sbjct: 55  IANALGVNSEWLSTGIGPMKKDGTTPINASP----SSNTFKIDILDLEVSAGPGVINREF 110

Query: 121 PEIRSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            EI                            +  SM      GD+L ++ +I+   GD +
Sbjct: 111 VEILRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGI 170

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCY---PVDTVE-MSDIEWIARIL 219
                      K L   +   + ++S N  Y        + M+ +    +++
Sbjct: 171 YAFLYDDTAHVKRLQKMKD-KLLVISDNKSYSAWDPIERDEMNRVFVFGKVI 221


>gi|299137331|ref|ZP_07030513.1| putative phage repressor [Acidobacterium sp. MP5ACTX8]
 gi|298600736|gb|EFI56892.1| putative phage repressor [Acidobacterium sp. MP5ACTX8]
          Length = 240

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 18/231 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAAT 65
           +   E   R+   H  T  GLA + G+   + ++ +    +  + R    ++    L  T
Sbjct: 2   ENFGERFKRIRTAHGYTQRGLASEIGISGAAISQWESGETQPDKIRAEFLDAAAHKLHTT 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLL----YFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
              + +   +  S G    +      ++    + P +G            G     +   
Sbjct: 62  VRHLLKGDGVEGSPGSVKVEAFAIHGMVDDEDFDPETGVMIPVYEMDVSGGPGAPILEFA 121

Query: 122 EIRS-------PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           E R            + A   +    + +  SM P     D ++++  +     +RL   
Sbjct: 122 ETRYKLHFTRKWLKDVKAKPEEIRVARVRGDSMQPTLWDNDKVVIHLGMTRIRNERLFAL 181

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIE---WIARIL 219
              G+   K L       + ++S N     YP + +E  D+     I +++
Sbjct: 182 AYAGEARVKRLYQLADGRLRVVSDNPDKAKYPDEFIEGDDLNNVLIIGQVI 232


>gi|229098164|ref|ZP_04229112.1| Phage transcriptional repressor [Bacillus cereus Rock3-29]
 gi|228685355|gb|EEL39285.1| Phage transcriptional repressor [Bacillus cereus Rock3-29]
          Length = 223

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 12/226 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  F  K   + + R+ +    +    A K GL PT+  +S      G+    S +++ K
Sbjct: 1   MVKFMEK--AKIVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      T   L  L      T +++      +    S        G    G        
Sbjct: 55  VCKGLGITTDDLEVLTTKGDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEEN 114

Query: 121 PEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E   P    +   + +      + TSM   +  G  +++     V  G   ++K    D
Sbjct: 115 IEGYLPMLSTFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYD 174

Query: 180 IVAKVLISRRGRSIDLMSL--NCCYPVDTVE--MSDIEWIARILWA 221
              K +    G  I L+ L  +  +   T +    D++ I R++ A
Sbjct: 175 ATVKKISK-SGSIITLIPLSNHPIHEPQTYDLSAEDVKIIGRVVQA 219


>gi|145636817|ref|ZP_01792482.1| transcriptional activator-regulatory protein [Haemophilus
           influenzae PittHH]
 gi|145269898|gb|EDK09836.1| transcriptional activator-regulatory protein [Haemophilus
           influenzae PittHH]
          Length = 225

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 14/224 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + S     E +  +     ++ + LAR  G+   S  K          +     +   
Sbjct: 1   MATLS-----ERLTSLMYEKGISQAELARLIGIKQPSVFKILSGETRNPKKILEIATALN 55

Query: 61  ILAA---TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +      T E                      I +L    S   G +     PT     +
Sbjct: 56  VDPHWLKTGEGDPDPSYRIVEVSEPQNPNTVRIDILDVEVSAGNGAYL---SPTEQGLLS 112

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                         A          +  SM P    GD+L ++ +      D L +    
Sbjct: 113 QEFDLTFFRQQFGRADAKHLKLITVKGDSMAPTLESGDLLYVDVSENYFSADGLYVFTFD 172

Query: 178 GDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD-IEWIARIL 219
                K L  R GR +  +S N   Y    ++  D +    R++
Sbjct: 173 DHTFIKRLQKR-GREMWAISDNKEEYKEWEIKQDDPVFIHGRVV 215


>gi|9633604|ref|NP_050962.1| P1 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|6118052|gb|AAF04000.1|AF157835_57 P1 [Endosymbiont phage APSE-1]
          Length = 260

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 83/232 (35%), Gaps = 32/232 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   +  K+ + I ++     + + + L+R+ G+   + ++       G  + P  + I 
Sbjct: 29  MGMMT-AKLNKNIKKLMAEKGVKSVAELSRRIGMPQPTLHRML----SGEVKSPRLKIIQ 83

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG----------------GF 103
           KI         +LL         + + + +        +                   G+
Sbjct: 84  KIADFFRVEANELLYKDLITSHISIENKTKAYERVEVNAIPFNFCKVPVLGTTQLGGGGY 143

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
           ++      G+ +  +  P                   + Q  SM+P  + G+ +++    
Sbjct: 144 WNPKESSAGHDYGYIIWPTE----------DRDAFALRCQGESMMPRIQHGEFVVMEPNY 193

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   GD +L++   G ++ K  + +R   + L+S+N  +P   + +  IE I
Sbjct: 194 KYKPGDEVLVQDDHGQVMVKTFLYQRDDVVHLLSINSNHPPIRLAVPTIEKI 245


>gi|86138839|ref|ZP_01057411.1| LexA repressor [Roseobacter sp. MED193]
 gi|85824486|gb|EAQ44689.1| LexA repressor [Roseobacter sp. MED193]
          Length = 238

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     +   I R  ++  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLNFIHRRLQKDGVPPSFDEMKVALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATN----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                I ++          +  Q          +                 +      G 
Sbjct: 61  ARAIEILRLPENMGGVPAPSANQTTAAGAFSPASARPPSTPRSTPAASVLAALEIPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSP-HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
              G     +     +      + +   +    + +  SM+      GDI+++      +
Sbjct: 121 IAAGVPIEAINQITHQIAIPQTMLSSNGKHYALEVRGDSMINAGINDGDIVVIRETDTAD 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K L  R   +I L + N  Y    +  + ++   R++
Sbjct: 181 DGDIVVALIADEEATLKRLFRR-NGAIALEAENPAYETRVLSPNQVKVQGRLV 232


>gi|134295270|ref|YP_001119005.1| putative phage repressor [Burkholderia vietnamiensis G4]
 gi|134138427|gb|ABO54170.1| putative phage repressor [Burkholderia vietnamiensis G4]
          Length = 238

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 16/227 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             I + I        L+   LA   GL    S  + ++   EG    P  + + K+  A 
Sbjct: 10  DDIHKRIKAKRLEKGLSMQQLATAVGLKGWQSVQQWEKPDDEGGT-APRRDKLQKVADAL 68

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             T   L            + +    +          F        G             
Sbjct: 69  GVTAEWLQFGA---PAPENRDQARQVVHLRDEVEIPRFDARASMGPGAIIPENDTIVEFV 125

Query: 126 PHNGI--------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                        +   +          SM   +  GD+L +++ +     D + +    
Sbjct: 126 RVTKSWIREALPTFTSMSNLALMPAHGDSMEESFSDGDLLWIDTGVCEVKIDAVYVLALN 185

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
             +  K L  R   SI ++S N  Y    +E  +      + R+++A
Sbjct: 186 DQLYVKRLQRRPDGSILMISDNKKYEPYLIENGERQRFRVLGRVIFA 232


>gi|293409515|ref|ZP_06653091.1| conserved hypothetical protein [Escherichia coli B354]
 gi|222032902|emb|CAP75642.1| phage-related repressor protein [Escherichia coli LF82]
 gi|281178259|dbj|BAI54589.1| phage transcriptional regulator [Escherichia coli SE15]
 gi|291469983|gb|EFF12467.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 230

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 23/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + ++   E+  ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 1   MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L           ++  K        P              G         E+
Sbjct: 55  ALGVRTEWLSSGIGPMRNDGQQLGKPTAN---HPKYFKIDVLDIEVSAGPGVINREFVEV 111

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                  +                    +  SM      GD+L ++  ++   GD +   
Sbjct: 112 LRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAF 171

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
                   K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 172 LYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 219


>gi|77462544|ref|YP_352048.1| LexA repressor [Rhodobacter sphaeroides 2.4.1]
 gi|332557429|ref|ZP_08411751.1| LexA repressor [Rhodobacter sphaeroides WS8N]
 gi|6685608|sp|Q9ZFA4|LEXA_RHOS4 RecName: Full=LexA repressor
 gi|4185550|gb|AAD09122.1| LexA repressor [Rhodobacter sphaeroides]
 gi|77386962|gb|ABA78147.1| LexA repressor [Rhodobacter sphaeroides 2.4.1]
 gi|332275141|gb|EGJ20456.1| LexA repressor [Rhodobacter sphaeroides WS8N]
          Length = 228

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 5/223 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++ + I    +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQMELLDFIKTRMDRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + +               +              +    +G+      G    G     +
Sbjct: 61  ARAIEIVKLPEAMERAGFSARAAKAAAAPLPKGAVTVETAGALDLPLMGRIAAGLPIEAI 120

Query: 119 -GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
            G P+  +    + + + Q    + +  SM+      GDI+++      + GD ++    
Sbjct: 121 NGGPQSVTVPGMMLSGRGQHYALEVKGDSMIAAGINDGDIVVIREQQTADNGDIVVALVA 180

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K    R G  I L   N  Y         ++   R++
Sbjct: 181 DHEATLKRYRRR-GGMIALEPANDSYETQVYPEQMVKVQGRLV 222


>gi|319776198|ref|YP_004138686.1| putative phage repressor [Haemophilus influenzae F3047]
 gi|301168972|emb|CBW28569.1| unnamed protein product [Haemophilus influenzae 10810]
 gi|317450789|emb|CBY87011.1| Putative phage repressor [Haemophilus influenzae F3047]
          Length = 219

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 73/222 (32%), Gaps = 24/222 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              + I + I +      LT   +A    G+   + ++ +    +     P++E++  + 
Sbjct: 1   MKSETIGKRIRQRRTELKLTQKDVANAIKGVSHVAISQWESDTTK-----PNSENLVDLS 55

Query: 63  AATNETICQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                 +      +   S+         ++PL+ +  +G+    D     TG+       
Sbjct: 56  TVLECDLLWLLRGEGSSSNVMPASIGTNKVPLISYVQAGTWTGIDDLKESTGDFNYIYTF 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            +                  + +  SM P ++ GD++I++  I+   G+ +       + 
Sbjct: 116 IDTSD----------DAFALEIKGDSMEPDFKAGDVIIIDPRIEPRAGEFVAAINGDYEA 165

Query: 181 VAKVLISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIA 216
             K                +L+ LN  YP  +    +I  I 
Sbjct: 166 TFKKYRPIGDIDELGRHHFELVPLNSDYPTLSSLKQEIRIIG 207


>gi|325529755|gb|EGD06606.1| putative phage repressor [Burkholderia sp. TJI49]
          Length = 212

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS----- 78
              LA  AG+   + ++      +G+ +    E    I          L+          
Sbjct: 9   QVELADAAGVTKGTVSQWL----DGKIKSIKLEYAVGIQKRYGYNPVWLVMGEGEKKLGT 64

Query: 79  ----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
               +    +   + +PL+    +G         FP G  +  +              + 
Sbjct: 65  PGYANVTPAQVGSRRVPLISSVQAGRMTEAVD-PFPPGGAFEYL---------LTDLDLS 114

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR--- 191
                 + +  SM P +  GD +I++ AIQ   GD ++ K    +   K   +R      
Sbjct: 115 DYAFALEIEGLSMAPDFNPGDRIIIDPAIQPRPGDFVVAKNGREEATFKKYRARGVGADG 174

Query: 192 --SIDLMSLNCCYPVDTVEMSDIEWIA 216
             + +L+ LN  YP  + E   +  I 
Sbjct: 175 REAFELIPLNPDYPTISSEHERVRIIG 201


>gi|237731126|ref|ZP_04561607.1| P22 repressor protein c2 [Citrobacter sp. 30_2]
 gi|226906665|gb|EEH92583.1| P22 repressor protein c2 [Citrobacter sp. 30_2]
          Length = 208

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 24/218 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + + I  +      +   L +  G+   +    ++         P  ES+ K+    N
Sbjct: 2   ETVGQRIKALRRVTKTSQKELGKFCGVSDVAVGYWEKDINV-----PGGESLSKLAKYFN 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +    +            K + IP++ +  +G      +               E+   
Sbjct: 57  TS-IDYILYGTEFEGNLITKMRRIPVISWVQAGQFTECKAAEV----------FSEVDKW 105

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDI 180
                 I       + +  SM     LP   +G  +I++   +   G  ++ +   T + 
Sbjct: 106 VETSLRIGDSAFALEVKGDSMTNPNGLPTIPEGATVIVDPDAEPLHGKIVVARLDGTNEA 165

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K L+    +   L+ LN  YP  ++  + +  I  +
Sbjct: 166 TVKKLVIDGPQKF-LVPLNPRYPNISINGNCL-IIGVV 201


>gi|221140342|ref|ZP_03564835.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|296277216|ref|ZP_06859723.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
           MR1]
 gi|302333665|gb|ADL23858.1| phage transcriptional regulator [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|329314675|gb|AEB89088.1| Phage transcriptional regulator [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 235

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 76/246 (30%), Gaps = 39/246 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+SFS       ++R+  + +++ S LA    ++ T+  + ++       R P  + + +
Sbjct: 1   MSSFS-----SNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGI-----RSPKLDKLPE 50

Query: 61  ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-- 110
           I          L+             +  +     ++  +L +  +      +       
Sbjct: 51  IANVFGVKPLDLIHDMDDSKIIEEIHNVSSQLTPPRQSNVLKYATNQLEEQNNDSDNLVD 110

Query: 111 ----------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
                                      E  S       +   D   K    SM PL++ G
Sbjct: 111 FNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNG 170

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213
            I+ +  +  +  G   +     GD   K +       + L+SLN  Y      +   + 
Sbjct: 171 QIIFIEKSHTIKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLHFYDNESVR 228

Query: 214 WIARIL 219
            + +++
Sbjct: 229 LVGKVI 234


>gi|15676805|ref|NP_273950.1| transcriptional regulator [Neisseria meningitidis MC58]
 gi|121634684|ref|YP_974929.1| transcriptional regulator [Neisseria meningitidis FAM18]
 gi|254804773|ref|YP_003082994.1| putative phage repressor protein [Neisseria meningitidis alpha14]
 gi|7226147|gb|AAF41318.1| transcriptional regulator [Neisseria meningitidis MC58]
 gi|120866390|emb|CAM10133.1| Transcriptional regulator [Neisseria meningitidis FAM18]
 gi|254668315|emb|CBA05285.1| putative phage repressor protein [Neisseria meningitidis alpha14]
 gi|308389079|gb|ADO31399.1| Transcriptional regulator [Neisseria meningitidis alpha710]
 gi|325132324|gb|EGC55017.1| peptidase, S24 family [Neisseria meningitidis M6190]
 gi|325144297|gb|EGC66602.1| peptidase, S24 family [Neisseria meningitidis M01-240013]
 gi|325202301|gb|ADY97755.1| peptidase, S24 family [Neisseria meningitidis M01-240149]
          Length = 238

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 25/241 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGR---------- 49
           MT   H+   + +  +A+    L P+ +A +  +   +    +  GI  +          
Sbjct: 1   MTM--HET-TDRLFEIAKEQGVLKPADIAERLNISQQALKNWESRGIAAKALPEVAKAFG 57

Query: 50  --NRWPSTESIFK-----ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
               W  T    +     I       +  +              +  + + Y   S   G
Sbjct: 58  VSETWLRTGEGSRTAPVLIDPDLPHEVKDIHRPMTWSSNDPLPDDDYVFVPYLKESCFKG 117

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
              +   P  N +    +P  +S                    SM     +   + +++ 
Sbjct: 118 GVGTYEIPDYNGY---RLPFGKSTLKRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTG 174

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWA 221
                  ++    + G    K LI + G S+ + S N   Y  +   +  +  I R+ W 
Sbjct: 175 ETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYGDENAPLDSLTVIGRVFWW 234

Query: 222 S 222
           S
Sbjct: 235 S 235


>gi|24374516|ref|NP_718559.1| prophage LambdaSo, Cro/CI family transcriptional regulator
           [Shewanella oneidensis MR-1]
 gi|24349105|gb|AAN56003.1|AE015737_1 prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Shewanella oneidensis MR-1]
          Length = 272

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 74/260 (28%), Gaps = 46/260 (17%)

Query: 7   KKIWEAIDRMAERHNL-TPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIFKILAA 64
           KK+   I R+  +  + + + LA   G    S     +             E++ K+L  
Sbjct: 8   KKVGRNIKRLRLKAGIKSQAALAELCGWKSQSRVGNYEAGTRAVS--AIDAETLAKVLNV 65

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-------------SGSGGFFDSGVFPT 111
           T   I    +    D  +    +                       +     F+     T
Sbjct: 66  TPAEILYGENNKDDDFVSMPSAQYSSGPYEEEDPFQLFKPKQELQNAEWHAGFELWDGDT 125

Query: 112 GNKWNTVGVPEIR-------------------------SPHNGIYAIQTQDTRHKTQDTS 146
             + + V +P  R                         S         +          S
Sbjct: 126 PLRDDEVALPFYREVELAAGSGSTFVQENGGCKLRFAKSTLKKSRVEPSNAACVTVSGNS 185

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVD 205
           MLP+ R G  + ++++ +      +      G +  K+L    G  I + S N   +P +
Sbjct: 186 MLPVLRHGTTVGVDTSKKSIIDGEMYAIDHDGMLRVKMLYRTPGGGIRIKSYNNDEFPDE 245

Query: 206 TVEMS---DIEWIARILWAS 222
            +      DI+ I  + W S
Sbjct: 246 FIPPEKASDIKIIGWVFWWS 265


>gi|284025046|ref|ZP_06379444.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
           132]
          Length = 235

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 76/246 (30%), Gaps = 39/246 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+SFS       ++R+  + +++ S LA    ++ T+  + ++       R P  + + +
Sbjct: 1   MSSFS-----SNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGI-----RSPKLDKLPE 50

Query: 61  ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-- 110
           I          L+             +  +     ++  +L +  +      +       
Sbjct: 51  IANVFGVKPLDLIHDMNDSKIIEEIHNVSSQLTPPRQSNVLKYATNQLEEQNNDSDNLVD 110

Query: 111 ----------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
                                      E  S       +   D   K    SM PL++ G
Sbjct: 111 FNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNG 170

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213
            I+ +  +  +  G   +     GD   K +       + L+SLN  Y      +   + 
Sbjct: 171 QIIFIEKSHTIKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLHFYDNESVR 228

Query: 214 WIARIL 219
            + +++
Sbjct: 229 LVGKVI 234


>gi|229117182|ref|ZP_04246561.1| Phage transcriptional repressor [Bacillus cereus Rock1-3]
 gi|228666350|gb|EEL21813.1| Phage transcriptional repressor [Bacillus cereus Rock1-3]
          Length = 223

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 76/226 (33%), Gaps = 12/226 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  F  K   + + R+ +    +    A K GL PT+  +S      G+    S +++ K
Sbjct: 1   MVKFMEK--AKIVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      T   L  L      T +++      +    S        G    G        
Sbjct: 55  VCKGLGITTDDLEVLTTKGDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEEN 114

Query: 121 PEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E   P    +   + +      + TSM   +  G  +++     V  G   ++K    D
Sbjct: 115 IEGYLPMLSTFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYD 174

Query: 180 IVAKVLISRRGRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
              K +    G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 175 ATVKKISK-SGSIITLIPLSNDPIHEPQTYDLSAEDVKIIGRVVQA 219


>gi|226940092|ref|YP_002795165.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
 gi|226715018|gb|ACO74156.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
          Length = 242

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 24/232 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            ++I   I  +A+R+ L+    A  AG+   S  +     +      P   ++ ++    
Sbjct: 13  EEEIGTRIRVVADRY-LSRQAAADAAGVSLISLRRYINGEV-----HPPFATLARLALPQ 66

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFP------PSGSGGFFDSGVFPTGNK-WNTV 118
             ++  L          T       P L                  S     G   W   
Sbjct: 67  GVSLHWLATGEGEQDEKTAAAAVPCPCLDTLGNPVDLEEFVFIPRYSVRAAAGCGQWPED 126

Query: 119 GVPEIRSPHNGIY------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
             P         +      A   + +       SM  +    D++++N A +   G   +
Sbjct: 127 ESPRFSMAFRRYWVENYLRANPDELSVIAVDGDSMEGVLNDRDVILVNHADRDPRGSIYV 186

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           ++   G +V K +    G  +++ S N  Y   TVE+     D + I R++W
Sbjct: 187 LRID-GHLVVKQVQRLPGGILEVSSSNPAYKPFTVELGKVGDDFDVIGRVVW 237


>gi|284008034|emb|CBA74134.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 232

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 22/230 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I +    + +T   L ++ G+   + ++ +    E   +  +  S+ K L  T E + 
Sbjct: 4   ERIRQARNHNKMTQESLGKRIGVSKATISQWESGTTEPNGK--NLVSLAKALGVTIEWLL 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGNKWNTVGVPEI 123
              +            +       +  +   G       FF       G     V +   
Sbjct: 62  DGDEKNAEVNAQLANAKIIGNFAPWDSNTPLGEDEIELPFFKEISLSAGKGS-FVTLDNN 120

Query: 124 RSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                  Y+                    SM P+   G    ++ +       ++     
Sbjct: 121 GYKLRFAYSTLRKAGVDPANAACVSITGNSMEPVVPDGATAGIDRSDTNIKDGQMYAIEH 180

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV---EMSDIEWIARILWAS 222
            G +  K+L    G  I + S N   Y  +     ++S+I+ + ++ W S
Sbjct: 181 EGMLRVKILYRIPGG-IRIRSYNRDEYADEDYIGSDISNIKIMGKVFWYS 229


>gi|315143625|gb|EFT87641.1| peptidase S24-like domain protein [Enterococcus faecalis TX2141]
          Length = 228

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 72/229 (31%), Gaps = 27/229 (11%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---------------------GRNR 51
           I  + ++  +T + LA K G+  ++ ++ +    +                     G   
Sbjct: 4   ITDLRKQKKMTSTELAEKVGIAKSAMSRYENRTRQFPVNKISDFAKALETSPEYLLGFEE 63

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            P ++ + KI   + +   +            EK+  +        +             
Sbjct: 64  EPLSQILTKINETSAKLETKRQKNVLIF---AEKELDKQNFETESRNRKVVPLVGKTAAN 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
                   +      H+  +  +  D     Q  SM PL + G I+       V  G+  
Sbjct: 121 PAVLEYGDI--DVEQHSFAHVPEGADCAINIQGDSMEPLIKDGSIVFYKKQCDVENGEIA 178

Query: 172 LIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +++     +  K +I     + I L S+N  Y    +E   I  I +++
Sbjct: 179 IVEIDNDGVTCKKVIKDYSNKQIILRSINTKYEDRILENEKIRIIGKVI 227


>gi|149915046|ref|ZP_01903575.1| putative phage repressor [Roseobacter sp. AzwK-3b]
 gi|149811234|gb|EDM71071.1| putative phage repressor [Roseobacter sp. AzwK-3b]
          Length = 220

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 8/208 (3%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            ER N++ + +ARKAG+   +    KR    G+ +  S E   KI  A    +  +    
Sbjct: 14  LERQNVSVAEIARKAGVPYDAVRDIKR----GKVQSTSWERAVKIAQALGIDLEDVSPAT 69

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
               +  E    ++  +           D  V        ++  P          A    
Sbjct: 70  SKTKQVIEPASSKLQAMVSVYDVYASAGDGAVVIHEEPIGSLAFPANYLR-QLTQANWRD 128

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISRR-GRSID 194
                 +  SMLP     D+++L+ + +    D L +    G+  + K +        + 
Sbjct: 129 LAIISVKGDSMLPTLADDDVVMLDRSKRDLSYDGLFVIRDNGEALLVKRIQRAPTPGHVM 188

Query: 195 LMSLNCC-YPVDTVEMSDIEWIARILWA 221
           ++S N   Y     ++SDIE I R++WA
Sbjct: 189 IISDNRALYDPVEKKLSDIEVIGRVIWA 216


>gi|296504207|ref|YP_003665907.1| LexA repressor [Bacillus thuringiensis BMB171]
 gi|296325259|gb|ADH08187.1| LexA repressor [Bacillus thuringiensis BMB171]
          Length = 219

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +    +    A K GL PT+  +S      G+    S +++ K+      T  
Sbjct: 5   EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L  L   +  T +++      +    S        G    G         E   P    
Sbjct: 61  DLERLTTQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 120

Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +   + +      + TSM   +  G  +++     V  G   ++K    D   K +    
Sbjct: 121 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 179

Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
           G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 180 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 215


>gi|149914774|ref|ZP_01903304.1| LexA repressor [Roseobacter sp. AzwK-3b]
 gi|149811567|gb|EDM71402.1| LexA repressor [Roseobacter sp. AzwK-3b]
          Length = 233

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 61/229 (26%), Gaps = 12/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     +   I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLAFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +           P           +         S        G    G
Sbjct: 61  ARALEIVKLPESLGGEAS-HGFTPRVIEGDKPSAPQPANSYGVDASDVIDVPMMGRIAAG 119

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
                +          G   + +      + +  SM       GD++I+      + GD 
Sbjct: 120 VPIEAIAHASHNVTVPGSMLSGKGVHYALEVRGDSMIEAGINDGDVVIIRETNTADNGDI 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    R G +I L + N  Y    +    ++   R++
Sbjct: 180 VVALVEDQEATLKKFYRR-GNAIALEAANPAYETRVLPEDQVKVQGRLV 227


>gi|38229113|ref|NP_938208.1| c repressor [Pseudomonas phage D3112]
 gi|579180|emb|CAA36500.1| putative repressor [Pseudomonas phage D3112]
 gi|37595164|gb|AAQ94439.1| c repressor [Pseudomonas phage D3112]
          Length = 240

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 22/230 (9%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            +F+ + +   I  +A   + +   LA++ G+  T   +  +            E +  I
Sbjct: 20  PTFTQE-VGTRIAEVARLLD-SRRALAKQVGIHETQLYRYIKGINAAAP-----ELLSAI 72

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---- 117
             A   ++  L++      +  E  +                   G    G+   T    
Sbjct: 73  AKAGRVSLDWLINGEEVAAKPVEGAKS------IEGEYVYIPLYDGQVSAGHGSWTDGAT 126

Query: 118 --VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
             V +   R          +  +  +    SM PL   GD ++++          + +  
Sbjct: 127 VLVNLAFTRYSLRKKGLDPSSISAIRIGGDSMEPLLCDGDTVLVDHTKSTVQDAAVYVVR 186

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWAS 222
               + AK L  R   S+ ++S N  Y    V    +SD+E I R++WAS
Sbjct: 187 LDDHLYAKRLQRRFDGSVSIISENKAYTEMIVPKAKLSDLEIIGRVVWAS 236


>gi|256843106|ref|ZP_05548594.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256614526|gb|EEU19727.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN]
          Length = 209

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 75/222 (33%), Gaps = 18/222 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S++++ + ++ + +  +++ + LAR+ GL  +S ++        + R      +    
Sbjct: 1   MRSNEEVVDYVNELRKSQHMSINELARETGLAKSSLSRYFN-----KTRGFPVNKVNLFA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A +    ++L +  ++ +  ++       +    + + G          + + T    E
Sbjct: 56  KALHVKPEEILGIQPTNMKPIDQTGMHAIRIPIIGTIACGTPILAEQNI-DGYTTELFEE 114

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIV 181
                             K Q  SM P    G  + +     V   +   ++     +  
Sbjct: 115 KPD---------GTLFALKCQGDSMEPKIPNGATVTVRLQPTVEDDEIAAVLVDDDEEAT 165

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILWAS 222
            K +    G+ + LM  N  Y    +   +    + +++  S
Sbjct: 166 LKRV-KHVGKQVMLMPENKKYDPILLNEENPGRILGKVVKVS 206


>gi|254421027|ref|ZP_05034751.1| LexA repressor [Brevundimonas sp. BAL3]
 gi|196187204|gb|EDX82180.1| LexA repressor [Brevundimonas sp. BAL3]
          Length = 233

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 60/227 (26%), Gaps = 9/227 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   ++PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQHELLMFIHERIQETGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPF-----SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            + L  T          P                   P      + +      G    G 
Sbjct: 61  ARALEVTKLPEQATAGAPRGRAGFKPDVIEGGGGAPRPAAVSAANDTRELPLLGKIAAGT 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
               +   + R         +      + +  SM       GD++++      N G+ ++
Sbjct: 121 PIAAIQHEQERLSVPESMLGKGDHYLLEIEGDSMIEAGILNGDLVVIRRGDTANNGEIVV 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K L  + G SI L   N  Y         +E   +++
Sbjct: 181 ALVEGEEATLKRLRRK-GGSIALEPANRNYETRIFGPDQVEVQGKLV 226


>gi|288818209|ref|YP_003432557.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6]
 gi|288787609|dbj|BAI69356.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6]
          Length = 235

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 69/220 (31%), Gaps = 15/220 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + +   L+      + G    +    +   ++         ++  I +    
Sbjct: 11  NIHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQ-----IPDTALKLIASTFGV 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT----VGVPEI 123
           +   L           +   +EI                 V   G  +      + V  +
Sbjct: 66  SYEWLKTGQGEMWGREKLSLEEIIEREQRKLLESKIKVPVVGKAGAGFPHSPSDIEVIGV 125

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGD 179
                  Y  + +    +    SM P   +GD ++  +       +  G  ++++  +G+
Sbjct: 126 VFVSKSPYLKEGKIFAVQVSGDSMHPALTEGDYVVFQTYEGDGSDIPNGKIVVVRNHSGE 185

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++ K L+     ++ L   N  YP    + ++ E + RI+
Sbjct: 186 LLVKRLLKM-NGTVLLAGDNPKYPPIFPQQAEAEGL-RIV 223


>gi|229151903|ref|ZP_04280100.1| Phage transcriptional repressor [Bacillus cereus m1550]
 gi|229191824|ref|ZP_04318797.1| Phage transcriptional repressor [Bacillus cereus ATCC 10876]
 gi|228591648|gb|EEK49494.1| Phage transcriptional repressor [Bacillus cereus ATCC 10876]
 gi|228631559|gb|EEK88191.1| Phage transcriptional repressor [Bacillus cereus m1550]
          Length = 223

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +    +    A K GL PT+  +S      G+    S +++ K+      T  
Sbjct: 9   EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L  L   +  T +++      +    S        G    G         E   P    
Sbjct: 65  DLERLATQEDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEENIEGYLPMLST 124

Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +   + +      + TSM   +  G  +++     V  G   ++K    D   K +    
Sbjct: 125 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 183

Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
           G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 184 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219


>gi|293402168|ref|ZP_06646306.1| LexA repressor [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304275|gb|EFE45526.1| LexA repressor [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 213

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 18/210 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + ++ E   L+   +++  G+  TSF+  +R     +   PS + +  +    N  I 
Sbjct: 11  NRLMKILEEKGLSSYQVSKDTGISQTSFSDWRR-----KKSSPSFKKLKILADYLNVDIE 65

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L  +     +  + KE +I +  F          +G F   +    + +P+     N  
Sbjct: 66  YLGGVTDERIKKPDIKEHQIQIPLFARLS----CGTGSFVDEDIIEYISLPDTILKPNKE 121

Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           Y        +  +  SM+      GD+L+      ++ G          + V K +    
Sbjct: 122 Y------FANYAKGDSMIGAGINDGDLLVFEKTNVLDNGSIGAFCVDNEEAVCKRIRKSE 175

Query: 190 GRSIDLMSLNCCYPVDTVEMSD--IEWIAR 217
              I L+  N  Y    +++ D     + +
Sbjct: 176 QGLIMLLPANEKYDPIIIDVKDTCFRIVGK 205


>gi|226328528|ref|ZP_03804046.1| hypothetical protein PROPEN_02422 [Proteus penneri ATCC 35198]
 gi|225203261|gb|EEG85615.1| hypothetical protein PROPEN_02422 [Proteus penneri ATCC 35198]
          Length = 239

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 5/203 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + +  +  N+    L+ + G+      +        + R    E + K + +T   + 
Sbjct: 22  KRLTQRMKEVNVDIRQLSEQVGVSYEMARRYTLGTA--KPRDDKMELVAKTVFSTPAYLD 79

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
             + L         K    +  +    S   G+      P      ++ +P+ R      
Sbjct: 80  YGIGLETDPKNEFNKDTAIVRQIEVFASAGNGY---VNNPFPEVVRSIEIPQERVYELFG 136

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
            +             SM P     D+L +++ I    GD + I         K L   +G
Sbjct: 137 RSNLDGVMIINVDGDSMTPTLNPKDLLFIDTKINQFNGDGIYIFNFEDSTFIKRLQRVKG 196

Query: 191 RSIDLMSLNCCYPVDTVEMSDIE 213
           R + ++S N  YP   ++  +I 
Sbjct: 197 RKLAVISDNDFYPPFFIDDHEIH 219


>gi|171742503|ref|ZP_02918310.1| hypothetical protein BIFDEN_01615 [Bifidobacterium dentium ATCC
           27678]
 gi|171278117|gb|EDT45778.1| hypothetical protein BIFDEN_01615 [Bifidobacterium dentium ATCC
           27678]
          Length = 244

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +K+ +AI     +    PS   +   AGL  P+S  ++ +    +G  R  + +     
Sbjct: 31  QRKVLDAIKTHLAQRGFAPSFREIGEAAGLKSPSSVKHQLQVLEEKGFIRMSANKGRAIE 90

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +                   T     + I   +  P          +    +  + + +P
Sbjct: 91  VVDLEGPASGNGVAEVIPFPTGVDSSESIMASHDVPLVGRIAAGVPITAEQHIDDVMRLP 150

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E  +               +    SM+      GD +++        GD +       + 
Sbjct: 151 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQHTAENGDIVAALLD-DEA 202

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + L+  N  Y     + +  E + +++
Sbjct: 203 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 238


>gi|218551631|ref|YP_002385423.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469]
 gi|218359173|emb|CAQ91836.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469]
          Length = 208

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 24/218 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + + I  +      +   L +  G+   +    ++         P  E++ K+    N
Sbjct: 2   ETVGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINV-----PGGEALSKLAKFFN 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +    +              + +P++ +  +G      +               E+   
Sbjct: 57  TS-IDYILYGAEFEGKLVTNMRRVPVISWVQAGQFTECRAAEV----------FSEVDKW 105

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDI 180
            +    I       + +  SM     LP   +G  +I++   +   G  ++ +   T + 
Sbjct: 106 VDTSLKIGDNSFALEVKGDSMTNPNGLPTIPEGATVIVDPDAEPRHGKIVIARLDGTNEA 165

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K L+    +   L+ LN  YP   +  + +  I  +
Sbjct: 166 TVKKLVIDGPQKF-LVPLNPRYPNIPINGNCL-IIGVV 201


>gi|317154419|ref|YP_004122467.1| peptidase S24/S26A/S26B [Desulfovibrio aespoeensis Aspo-2]
 gi|316944670|gb|ADU63721.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 223

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 13/212 (6%)

Query: 15  RMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
           R+    ++ + S LAR+  +   + + SKR G     RW    S    L        +  
Sbjct: 17  RLCSETDIASQSQLARELEVGRAAVSLSKRKGTVP-PRWILDLSARFGLNPLWLEKGKGA 75

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
               +     +    EIP +       GG F++     G                G    
Sbjct: 76  VRAEAACDPADTPYHEIPKVRARLCAGGGSFET----EGQVEGYYSFRSDWLRSRG---N 128

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                  +    SM P  ++GD+++++ A        +        ++ K +       +
Sbjct: 129 PANMVLMEVVGNSMEPEIKEGDMVLIDQARCDILSGSIYAVGVEDTVMVKRVERLP-GIL 187

Query: 194 DLMSLNCCYPVDTVEMSD---IEWIARILWAS 222
            L S N  Y    +   +   +  I +ILW S
Sbjct: 188 VLRSDNMDYSPIHLSGDELNNVRVIGKILWTS 219


>gi|228909524|ref|ZP_04073348.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 200]
 gi|228850115|gb|EEM94945.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 200]
          Length = 223

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +    +    A K GL PT+  +S      G+    S +++ K+      T  
Sbjct: 9   EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L  L   +  T +++      +    S        G    G         E   P    
Sbjct: 65  DLERLATQEDNTVKEEVSIYETIQKDQSNIIHIPIIGSVAAGTPIFAEENIEGYLPMLST 124

Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +   + +      + TSM   +  G  +++     V  G   ++K    D   K +    
Sbjct: 125 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 183

Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
           G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 184 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219


>gi|114705892|ref|ZP_01438795.1| LexA repressor [Fulvimarina pelagi HTCC2506]
 gi|114538738|gb|EAU41859.1| LexA repressor [Fulvimarina pelagi HTCC2506]
          Length = 238

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 62/233 (26%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++ + ID       + PS    K  L+  S +   R       R       + 
Sbjct: 1   MLTRKQHELLKFIDARLNETGVPPSFDEMKDALELKSKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATN----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG------- 107
            + L            +         + +  +  +        +   G  +         
Sbjct: 61  ARALEVLKLPDAMRRPEPQQPAQRGFKPSVIEGSKGQPPKPRGASDEGAANENVSIPVMG 120

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166
               G   + +              +  +    + +  SM       GD +++  +    
Sbjct: 121 RIAAGVPISAIQHNTHSISIPPDMIMGGEHYALEVKGDSMIEAGILDGDTVVIRRSETAV 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+ ++      +   K    ++G +I L + N  Y         +    +++
Sbjct: 181 PGEIVVALVDDEEATLKRF-RKKGDTIALEAANPAYETRIFGADRVRVQGKLV 232


>gi|228959912|ref|ZP_04121578.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229128978|ref|ZP_04257952.1| Phage transcriptional repressor [Bacillus cereus BDRD-Cer4]
 gi|229146271|ref|ZP_04274645.1| Phage transcriptional repressor [Bacillus cereus BDRD-ST24]
 gi|228637190|gb|EEK93646.1| Phage transcriptional repressor [Bacillus cereus BDRD-ST24]
 gi|228654476|gb|EEL10340.1| Phage transcriptional repressor [Bacillus cereus BDRD-Cer4]
 gi|228799764|gb|EEM46715.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 223

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +    +    A K GL PT+  +S      G+    S +++ K+      T  
Sbjct: 9   EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L  L   +  T +++      +    S        G    G         E   P    
Sbjct: 65  DLERLATQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 124

Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +   + +      + TSM   +  G  +++     V  G   ++K    D   K +    
Sbjct: 125 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 183

Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
           G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 184 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219


>gi|30021801|ref|NP_833432.1| LexA repressor [Bacillus cereus ATCC 14579]
 gi|29897357|gb|AAP10633.1| LexA repressor [Bacillus cereus ATCC 14579]
          Length = 219

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +    +    A K GL PT+  +S      G+    S +++ K+      T  
Sbjct: 5   EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L  L   +  T +++      +    S        G    G         E   P    
Sbjct: 61  DLERLATQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 120

Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +   + +      + TSM   +  G  +++     V  G   ++K    D   K +    
Sbjct: 121 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 179

Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
           G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 180 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 215


>gi|85058275|ref|YP_453977.1| hypothetical protein SG0297 [Sodalis glossinidius str. 'morsitans']
 gi|84778795|dbj|BAE73572.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
          Length = 232

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 83/224 (37%), Gaps = 25/224 (11%)

Query: 4   FSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +K+   I+ +     + + + L+R+ G+   + ++     ++   R    ++I K  
Sbjct: 3   LGTEKLKRNINSLMSNKQVKSVAELSRRIGMPQPTLHRMLNGEVK-SPRLAVVQNIAKFF 61

Query: 63  A-------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                           N    ++        +       ++P+L     G GG++D   +
Sbjct: 62  NVEANDLLYKDLTLKDNHQPKEIPQTEIFPDKPIPLAFTKVPMLGTAQLGGGGYWDLQEY 121

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
             G     V  P                   K Q  SM+P  + G+ +++        GD
Sbjct: 122 AVGQGDGYVLWPTK----------DKDAFALKCQGDSMMPRIQHGEFVVVEPNRGYKPGD 171

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
            +L++   G+++ K+ + ++   ++L+S+N  +    ++   I+
Sbjct: 172 EVLVQDEQGEVMIKIFLFQKDGIVNLLSVNSKHAPTRLDAHTIK 215


>gi|312127456|ref|YP_003992330.1| transcriptional repressor, lexa family [Caldicellulosiruptor
           hydrothermalis 108]
 gi|312793672|ref|YP_004026595.1| transcriptional repressor, lexa family [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312875826|ref|ZP_07735816.1| transcriptional repressor, LexA family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311777475|gb|ADQ06961.1| transcriptional repressor, LexA family [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311797307|gb|EFR13646.1| transcriptional repressor, LexA family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180812|gb|ADQ40982.1| transcriptional repressor, LexA family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 202

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I +  +     P+   +    GL  TS       R   +G   R PS     
Sbjct: 8   KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                       +      +   P          +    N   T+ 
Sbjct: 68  EIVD---------------------DEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P                   + +  SM        DI+I+        GD ++      
Sbjct: 107 LPYDLVGTE-------DAFLLRVRGDSMIEAGIFDNDIIIVRRQNVAENGDIVVALID-D 158

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N       V+  D++ + +++
Sbjct: 159 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 196


>gi|254455849|ref|ZP_05069278.1| LexA repressor [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082851|gb|EDZ60277.1| LexA repressor [Candidatus Pelagibacter sp. HTCC7211]
          Length = 225

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 61/223 (27%), Gaps = 4/223 (1%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   K +   I++      ++PS    K  L+  S +   R       R        K
Sbjct: 1   MLTKKQKNLLLFINKKLRSSGVSPSYEEMKQSLNLKSKSGIHRLISALEERGFIKRLAHK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             A     + +           +    K         S        G    G     +  
Sbjct: 61  ARALEVIKLPETASANDIYNSFSPSVIKGGLDEVNINSDEIEVPVLGKIAAGTPVEAIQN 120

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              R P              K Q  SM      +GD +I+      + G  ++      +
Sbjct: 121 EVSRIPLPNNLEKNGDYFGLKVQGDSMIEAGINEGDTVIIKRTDTADNGKIVVALIDEHE 180

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
            + K +  ++G+ + L S N  Y         ++     +  S
Sbjct: 181 AMLKRI-RKKGKVVALESANRNYETKIFGPDRVKVQG--VLVS 220


>gi|26006818|sp|Q9A724|LEXA_CAUCR RecName: Full=LexA repressor
          Length = 234

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 14/230 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-- 50
           M +    ++   I    +   ++PS         LA K+G+        +  G   R   
Sbjct: 1   MLTRKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHR-LITALEERGFIRRLAH 59

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R  + E +     AT     +                          + S      G   
Sbjct: 60  RARALEVVKLPQQATAAAPPKGRGAFRPQVFEGGGAPPPAASPAAAANDSRELPILGRIA 119

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
            G   + +     R P         +    + Q  SM       GD +I+        G+
Sbjct: 120 AGTPIDAIQHERERLPVPEAMLGAGEHYVLEVQGDSMIEAGILDGDYVIIKKGDTATSGE 179

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K L  ++G SI L + N  Y         +E   +++
Sbjct: 180 IVVAL-VGEEATLKRL-RKKGGSIALEAANPKYETRIFGPDQVEVQGKLV 227


>gi|315655235|ref|ZP_07908136.1| LexA repressor [Mobiluncus curtisii ATCC 51333]
 gi|315490490|gb|EFU80114.1| LexA repressor [Mobiluncus curtisii ATCC 51333]
          Length = 306

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 63/220 (28%), Gaps = 12/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            +++   + R++++    PS   LA   GL   S  K     +  +    R P+T    +
Sbjct: 87  QQEVLTTLYRLSQKLAYPPSVRELAEAMGLSSPSSVKHHLDVLTQKGYLRRAPNTPRALE 146

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +        +        G +       IP+     + +      G    G       +
Sbjct: 147 FVKLP--EGLETPSPDPVSGTSQSATITTIPVGIADTAVATPVPLVGQIAAGAPITAEEM 204

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E        +    +      +  SM       GD +++    +   G+ +      G+
Sbjct: 205 VEDTFALPRRFTGSGELFMLAVKGDSMQEGGILDGDWVVVRHQNEARNGEIVAAMLD-GE 263

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         + L+  N  Y            + +++
Sbjct: 264 ATVKEFSR-ADGHVWLLPHNENYAPI--PGDTATILGKVV 300


>gi|310815580|ref|YP_003963544.1| LexA repressor [Ketogulonicigenium vulgare Y25]
 gi|308754315|gb|ADO42244.1| LexA repressor [Ketogulonicigenium vulgare Y25]
          Length = 221

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 6/220 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +    ++ E ID+  +   + PS    K  LD  S +   R       R      I +
Sbjct: 1   MLTRKQLELLEFIDQRVKATGVPPSFEEMKEALDLKSKSGIHRLITALEERGF----IRR 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +           +    +       ++ ++         +      G    G     +  
Sbjct: 57  LAHRARALEVVRMPEMTAHKPAAAARKPQLVASALNTLAAIEVDVMGRIAAGVPIAAISE 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              +                + Q  SM+ +    GDI+++  A   + GD ++      +
Sbjct: 117 VSHQVAVPQGMIGTGNHYALEVQGDSMIGIGINDGDIVVIRHADLASNGDIVVALVDEAE 176

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +    I L + N  Y    +  + +    +++
Sbjct: 177 ATLKRFRRQ-NGMIALEAANPAYETRLLPEARVRVQGKLV 215


>gi|167032201|ref|YP_001667432.1| putative phage repressor [Pseudomonas putida GB-1]
 gi|166858689|gb|ABY97096.1| putative phage repressor [Pseudomonas putida GB-1]
          Length = 234

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 12/223 (5%)

Query: 11  EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNET 68
             I  + +    ++    A    LD +  ++      + G     + E    + A    +
Sbjct: 6   RRIASLRKIMGTMSQKEFAEAHDLDASYLSQLLNGHRKLGEKAALNLELKIGLTAGMLTS 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    +         +      F          S        +  + V    + H 
Sbjct: 66  PPSESPTHKAPDNVVHLSARAGKDKNFILIPHLDIAASMGHGKAAPYMHIEVIRDMTVHL 125

Query: 129 GIYAIQT-------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               +Q                  SM   +  GD L+++  I     D + +    GD+ 
Sbjct: 126 DWLRMQGLTFSKVDNLAIISGNGDSMTGTFADGDALLVDRGITEVKTDAIYVFTLDGDLY 185

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARILWA 221
            K L    G  + ++S N  YP  T+++     +   AR+L A
Sbjct: 186 IKRLQRLTGGQLRMISDNPIYPPITIDLSMIDRMHIQARVLLA 228


>gi|302871708|ref|YP_003840344.1| transcriptional repressor, LexA family [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574567|gb|ADL42358.1| transcriptional repressor, LexA family [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 202

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I +  +     P+   +    GL  TS       R   +G   R PS     
Sbjct: 8   KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                       +      +   P          +    N   T+ 
Sbjct: 68  EIVD---------------------DEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P                   + +  SM        DI+I+        GD ++      
Sbjct: 107 LPYDLVGTE-------DAFLLRVRGDSMIEAGIYDNDIIIVRRQNVAENGDIVVALID-D 158

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N       V+  D++ + +++
Sbjct: 159 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 196


>gi|9635682|ref|NP_061595.1| repressor [Staphylococcus prophage phiPV83]
 gi|8918752|dbj|BAA97812.1| repressor [Staphylococcus prophage phiPV83]
 gi|298694365|gb|ADI97587.1| putative phage repressor [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 236

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 76/247 (30%), Gaps = 40/247 (16%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+SFS       ++R+  + +++ S LA    ++ T+  + ++       R P  + + +
Sbjct: 1   MSSFS-----SNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGI-----RSPKLDKLPE 50

Query: 61  ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-- 110
           I          L+             +  +     ++  +L +  +      +       
Sbjct: 51  IANVFGVKPLDLIHDMDDSKIIEEIHNVSSQLTPPRQSNVLKYATNQLEEQNNDSDDNLV 110

Query: 111 -----------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                                       E  S       +   D   K    SM PL++ 
Sbjct: 111 DFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKN 170

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDI 212
           G I+ +  +  +  G   +     GD   K +       + L+SLN  Y      +   +
Sbjct: 171 GQIIFIEKSHTIKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLHFYDNESV 228

Query: 213 EWIARIL 219
             + +++
Sbjct: 229 RLVGKVI 235


>gi|312622282|ref|YP_004023895.1| transcriptional repressor, lexa family [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202749|gb|ADQ46076.1| transcriptional repressor, LexA family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 202

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I +  +     P+   +    GL  TS       R   +G   R PS     
Sbjct: 8   KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                      ++      +   P          +    N   T+ 
Sbjct: 68  EIVD---------------------EEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P                   + +  SM        DI+I+        GD ++      
Sbjct: 107 LPYDLVGTE-------DAFLLRVRGDSMIEAGIFDNDIIIVRRQNVAENGDIVVALID-D 158

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N       V+  D++ + +++
Sbjct: 159 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 196


>gi|330814024|ref|YP_004358263.1| SOS-response repressor and protease LexA [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327487119|gb|AEA81524.1| SOS-response repressor and protease LexA [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 208

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 45/201 (22%), Gaps = 3/201 (1%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            +   ++PS    +  L   S +   R       R    + +     A            
Sbjct: 1   MKSDGVSPSYDEMRKSLSLKSKSGIHRLISALEERGF-IKRLAHKARALEVVKLPENASV 59

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
                       +  L     +        G    G     +       P          
Sbjct: 60  KDLFNNFTPSLIKGGLDDVKKTKENFIPLIGKIAAGLPIEAIEEHHEDIPCPPGTKNPDD 119

Query: 137 DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
               K +  SM+      GD +I+        G  ++      +   K    +   +I L
Sbjct: 120 FYALKVEGDSMIDAGIHDGDTVIIKKTSTAENGKIVVALIDNHEATLKRYRKKSN-AIAL 178

Query: 196 MSLNCCYPVDTVEMSDIEWIA 216
            S N  Y         I+   
Sbjct: 179 ESANPAYETRIFGPERIKIQG 199


>gi|83311965|ref|YP_422229.1| LexA repressor [Magnetospirillum magneticum AMB-1]
 gi|123740455|sp|Q2W3A5|LEXA_MAGMM RecName: Full=LexA repressor
 gi|82946806|dbj|BAE51670.1| LexA repressor [Magnetospirillum magneticum AMB-1]
          Length = 235

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 58/230 (25%), Gaps = 12/230 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   ID       ++PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQYELLMFIDERLRATGISPSFDEMKDALDLKSKSGIHRLITGLEERGFIRRLAHR 60

Query: 59  FKILA--ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------ 110
            + L      E        P +        +          +   G  DS   P      
Sbjct: 61  ARALEVVRLPENRNDQTLPPPAKAFAPNVIKGGFAASQLAGAPVAGPSDSVTLPLYGKIA 120

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
            G     +                           SM       GD +++ S      G 
Sbjct: 121 AGTPIEALRDHSNSVDIPASMLGSGNHYALTVDGDSMIEAGINDGDTVVIRSCDSAETGT 180

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      ++  K L  + G S+ L   N  Y    +    ++   R++
Sbjct: 181 IVVALVDDTEVTLKRLRRK-GTSVALEPANKAYETRVLPPDRVKVQGRLV 229


>gi|167465660|ref|ZP_02330749.1| LexA repressor [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382028|ref|ZP_08055972.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154007|gb|EFX46343.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 205

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 37/227 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           M   S ++  I E I    +     PS   +    GL   ++ +   +R   +G   R P
Sbjct: 1   MGKLSQRQQAILEFIKNEVKEKGYPPSVREIGEAVGLASSSTVHGHLERLEKKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL   + +                            P          +  T N
Sbjct: 61  TKPRAIEILDMDSSSTFSFSVTR-------------------VPLIGKVTAGMPITATEN 101

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             +   +P         Y              SM       GD++I+      + GD ++
Sbjct: 102 IEDYFPLPSH-------YVGDHNVFMLSVLGDSMIETGIHDGDLVIVRQQQTADNGDIVV 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +   I L   N       +    +  + +++
Sbjct: 155 AMTEDDEATVKRFYKEKD-HIRLQPENSSMAPIILSN--VSILGKVI 198


>gi|152989242|ref|YP_001346150.1| transcriptional regulator PrtR [Pseudomonas aeruginosa PA7]
 gi|150964400|gb|ABR86425.1| transcriptional regulator PrtR [Pseudomonas aeruginosa PA7]
          Length = 256

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + +     NL    LA  AG+   + +K      +      ST  + +I AA   +  
Sbjct: 14  ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117
            L     +    +     +   L   P                   +       G     
Sbjct: 68  WLQTGEGAPAARSPVPVADGSPLVLEPLHPWDSETPLDEDEVELPLYKEVEMSAGAGRTA 127

Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           V   E R      YA         +     +    SM PL   G  + +++A        
Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222
           +      G +  K +    G  I L S N   YP +     D     I  I  + W S
Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244


>gi|194430884|ref|ZP_03063221.1| repressor protein C2 [Escherichia coli B171]
 gi|194411072|gb|EDX27557.1| repressor protein C2 [Escherichia coli B171]
 gi|324014358|gb|EGB83577.1| helix-turn-helix protein [Escherichia coli MS 60-1]
          Length = 207

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 21/211 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNE 67
           +            +T   +A  AG+   S    +     GR R P +   + K L  +  
Sbjct: 3   LAARFKARRLELGMTQVEVANSAGVSQQSIESIE----SGRTRKPRNLLDLAKALKCSP- 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                L    +     E   + IP+L +  +G           TG  +  +         
Sbjct: 58  ---DWLLNGKNIMPLAEISTRRIPILSYVQAGELTEARDITDLTGE-FEYILADSD---- 109

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                I       +    SM P +++GDI+I++  +    G+ ++ K    +   K    
Sbjct: 110 -----IPETCFALRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNDGHEATFKKYRP 164

Query: 188 RRGRS--IDLMSLNCCYPVDTVEMSDIEWIA 216
                   +L+ LN  YP+      +++ I 
Sbjct: 165 LGIGIDDFELIPLNPDYPIFRSADMNLQIIG 195


>gi|228922414|ref|ZP_04085718.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837239|gb|EEM82576.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 223

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +    +    A K GL PT+  +S      G+    S +++ K+      T  
Sbjct: 9   EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L  L   +G T +++      +    S        G    G         E   P    
Sbjct: 65  DLERLATQEGNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 124

Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +   + +      + TSM   +  G  +++     V  G   ++K    D   K +    
Sbjct: 125 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 183

Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
           G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 184 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 219


>gi|225023311|ref|ZP_03712503.1| hypothetical protein EIKCOROL_00164 [Eikenella corrodens ATCC
           23834]
 gi|224943956|gb|EEG25165.1| hypothetical protein EIKCOROL_00164 [Eikenella corrodens ATCC
           23834]
          Length = 211

 Score =  101 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 68/218 (31%), Gaps = 25/218 (11%)

Query: 17  AERHNLTPS---GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
             +  L+ S     A K G++ ++    K+ G+         E   KI   T  ++  L+
Sbjct: 4   RAKLALSASSDKDFAHKLGINASTVVGYKQRGVVP------LEQCIKIAEQTGVSLDWLI 57

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                  + T   +    ++  P             F   N    +           + A
Sbjct: 58  LGKGESDKNTAAGKATPSVVLVPLYDVPVSAGHGSFFDAENVIQQIPFDAEWLEREDLIA 117

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
              Q      +  SM P  +  DI++++  +    GD + +    G +  K L       
Sbjct: 118 --GQLACLPIEGDSMSPGLKTSDIVLVD--LTHQRGDGVFVLRLNGALRIKRLQWLADGR 173

Query: 193 IDLMSLNCCYPVDTVE----MSDIEW-------IARIL 219
           + + S N  Y  + V+      D          I R++
Sbjct: 174 LRISSDNPIYETEYVDPNTPPDDFAIIGFCHTKIGRVV 211


>gi|323699001|ref|ZP_08110913.1| putative phage repressor [Desulfovibrio sp. ND132]
 gi|323458933|gb|EGB14798.1| putative phage repressor [Desulfovibrio desulfuricans ND132]
          Length = 220

 Score =  101 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
               R+     +   S LAR+  +   + + +KR G     RW    S    L       
Sbjct: 7   AFFKRLCSETEIRNQSQLARELDVGRAAVSLAKRKGAVP-ARWILDLSARFGLNPLWLEQ 65

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +    P +      +       +    +             G                G
Sbjct: 66  GKGFPRPEAALAAAAEDGASYAEIPKVRARLCAGGG-SFETEGQVEGYYSFRSDWLTRRG 124

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                      +    SM P  ++GD+++++ +        +        ++ K +    
Sbjct: 125 ---NPANMVLMEVIGNSMEPEIKEGDMVLIDQSRTDVLSGGIYAVGVEDTVMVKRVERLP 181

Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARILWAS 222
             ++ L S N  Y    +   +   +  I ++LWAS
Sbjct: 182 -GTLVLRSDNVDYSPVHLSGDELDNVRVIGQVLWAS 216


>gi|33600663|ref|NP_888223.1| putative phage repressor [Bordetella bronchiseptica RB50]
 gi|33568263|emb|CAE32175.1| putative phage repressor [Bordetella bronchiseptica RB50]
          Length = 227

 Score =  101 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 17/224 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M++       E +        ++ S LAR+  +   + +        G  +  + +++  
Sbjct: 1   MSTLQ-----ERLRDALADAQISQSELARRVKVSRGAISLWL----TGATKELTADNLLA 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              A       L             ++        P +          +    +   +G 
Sbjct: 52  AAQALGVNPVWLGSGKGPKRSGEVAEQPYFDNNVAPAAAGSRRVPLINYVQAGELTEIGA 111

Query: 121 PEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                    +     +       +    SM P ++ GD +I++  I    GD ++ +   
Sbjct: 112 AFSGEAVEYLLTDMNLSQHAFALEITGLSMYPDFKPGDRIIVDQEICPQPGDFVVARNGG 171

Query: 178 GDIVAKVLISR-----RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            +   K    R          +L+ LN  YP    +   +  I 
Sbjct: 172 YEATFKKYRPRGLDANGNDVFELVPLNDDYPTLYSDRELLTIIG 215


>gi|153001771|ref|YP_001367452.1| putative phage repressor [Shewanella baltica OS185]
 gi|151366389|gb|ABS09389.1| putative phage repressor [Shewanella baltica OS185]
          Length = 241

 Score =  101 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 24/241 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              ++   + +    +    T + L    G+   S  K      +   +      I K+L
Sbjct: 1   MNKNESFADRLRTAMDEAGYTQASLGEAIGMAQPSVWKLTTGKTKNTRK---LYEIAKVL 57

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLY------------FPPSGSGGFFDSGVFP 110
             + E +    +      +   +++      +                    F     F 
Sbjct: 58  RVSPEWLLNGREPKKMGEQPNRQQQIPEKEEWGTLDAWDDSTPINSDEVEVPFLRDVEFA 117

Query: 111 TGNK----WNT----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
            G+      +     +   +      G     +       +  SM P    G  + +N+ 
Sbjct: 118 CGDGTFNDEDYNGFKLRFSKSTLRKVGANTDGSGVICFPARGNSMEPYIPDGTTVAVNTN 177

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWA 221
            +     ++      G    KVL       ++++S N   Y  +      +E I R+ W 
Sbjct: 178 DKKIVDGKIYAINENGWKRIKVLRRSSPDKLNILSFNSDEYEPEDKPAESVEIIGRVFWY 237

Query: 222 S 222
           S
Sbjct: 238 S 238


>gi|71901484|ref|ZP_00683571.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1]
 gi|71728740|gb|EAO30884.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1]
          Length = 336

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 15/222 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I  + +   +T S +A    +   + +  KR G   +  + +  +  K+         
Sbjct: 107 RFIAALGKNREVTQSAIATFCNVSEQAVSGWKRTGRIDKKHFAALSTALKV--PLEYWYG 164

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVG----VPEI 123
           +              +  +      P +             G        V     +P  
Sbjct: 165 EAYGAERVGIDVRRIRAVDGEEGTDPETDVMIPVYDLEVSGGPGCTVPEYVETRYKLPFQ 224

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            +      A        K + +SM  +  +GD +++++  +    D +      G+   K
Sbjct: 225 INWLRTWDAKPNDILIAKVRGSSMEDVLYEGDKVVIHTKRRRIRNDAVYALVYGGEARIK 284

Query: 184 VLISRRGRSIDLMSLNCC---YPVDTVEMS---DIEWIARIL 219
            L      S+ ++S N     +P + V+      +  I +++
Sbjct: 285 RLFVMADGSLRIVSHNPDKGRFPDEVVQPDNLEQVSIIGQVI 326


>gi|16126145|ref|NP_420709.1| LexA repressor [Caulobacter crescentus CB15]
 gi|221234916|ref|YP_002517352.1| LexA repressor [Caulobacter crescentus NA1000]
 gi|13423353|gb|AAK23877.1| repressor LexA [Caulobacter crescentus CB15]
 gi|220964088|gb|ACL95444.1| LexA repressor [Caulobacter crescentus NA1000]
          Length = 245

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 14/230 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-- 50
           M +    ++   I    +   ++PS         LA K+G+        +  G   R   
Sbjct: 12  MLTRKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHR-LITALEERGFIRRLAH 70

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R  + E +     AT     +                          + S      G   
Sbjct: 71  RARALEVVKLPQQATAAAPPKGRGAFRPQVFEGGGAPPPAASPAAAANDSRELPILGRIA 130

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
            G   + +     R P         +    + Q  SM       GD +I+        G+
Sbjct: 131 AGTPIDAIQHERERLPVPEAMLGAGEHYVLEVQGDSMIEAGILDGDYVIIKKGDTATSGE 190

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K L  ++G SI L + N  Y         +E   +++
Sbjct: 191 IVVAL-VGEEATLKRL-RKKGGSIALEAANPKYETRIFGPDQVEVQGKLV 238


>gi|148255849|ref|YP_001240434.1| LexA repressor [Bradyrhizobium sp. BTAi1]
 gi|166224555|sp|A5EK34|LEXA_BRASB RecName: Full=LexA repressor
 gi|146408022|gb|ABQ36528.1| SOS-response transcriptional repressor, LexA [Bradyrhizobium sp.
           BTAi1]
          Length = 232

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 60/227 (26%), Gaps = 9/227 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I+   +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQYELLRFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-----FDSGVFPTGN 113
            + +                    +  +     +    P+   G         G    G 
Sbjct: 61  ARAIEVIKLPELSQAASNRRGFTPSVIEGNLGKVRTSTPALDDGERPVAVPVMGRIAAGT 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
               +                      + +  SM+      GD+ ++      + GD ++
Sbjct: 121 PIEALQTRSHTISVPADMLGNGDHYALEVRGDSMVDAGILDGDMALIQRNETADTGDIVV 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K    R   SI L   N  Y V  +  + ++   +++
Sbjct: 181 ALIDDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVKIQGKLV 226


>gi|167755401|ref|ZP_02427528.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402]
 gi|237733631|ref|ZP_04564112.1| SOS-response transcriptional repressor [Mollicutes bacterium D7]
 gi|167704340|gb|EDS18919.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402]
 gi|229383229|gb|EEO33320.1| SOS-response transcriptional repressor [Coprobacillus sp. D7]
          Length = 206

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 22/213 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I ++ +   LT   L    G+  ++  K +      R      ++I K+    +   
Sbjct: 3   GERIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENN----RVENLKKDTIQKLSEIFDVPA 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L +  S+                      G F        N    + +PE     + 
Sbjct: 59  SYFLGIDESNQPIITDSITIPLYSDIS--CGTGLFVDD-----NVDEYISLPETLLSPSK 111

Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            Y              SM+     +GD+++   + Q+  G+             K     
Sbjct: 112 EY------FCQYADGDSMINENINQGDLIVFEKSNQIRNGEVGCFTIDDNVATCKKFYRD 165

Query: 189 RGRS-IDLMSLNCCYPVDTVEMSD---IEWIAR 217
                I L   N  Y    +          I +
Sbjct: 166 DNNHCIILQPANPEYTPIVINQESQAGFRVIGK 198


>gi|146341049|ref|YP_001206097.1| LexA repressor [Bradyrhizobium sp. ORS278]
 gi|166224556|sp|A4YVE6|LEXA_BRASO RecName: Full=LexA repressor
 gi|146193855|emb|CAL77872.1| SOS response transcriptional repressor, lexA [Bradyrhizobium sp.
           ORS278]
          Length = 232

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 60/227 (26%), Gaps = 9/227 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I+   +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQYELLRFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-----FDSGVFPTGN 113
            + +                    +  +     +    P+   G         G    G 
Sbjct: 61  ARAIEVIKLPELSQAAGNRRGFTPSVIEGNLGKVRTSTPALEDGERPVAVPVMGRIAAGT 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
               +                      + +  SM+      GD+ ++      + GD ++
Sbjct: 121 PIEALQTRSHTISVPADMLGNGDHYALEVRGDSMVDAGILDGDMALIQRNETADTGDIVV 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K    R   SI L   N  Y V  +  + ++   +++
Sbjct: 181 ALIDDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVKIQGKLV 226


>gi|295689577|ref|YP_003593270.1| LexA family transcriptional repressor [Caulobacter segnis ATCC
           21756]
 gi|295431480|gb|ADG10652.1| transcriptional repressor, LexA family [Caulobacter segnis ATCC
           21756]
          Length = 232

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 10/227 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +    ++   I    +   ++PS    K  LD  S +   R       R        +
Sbjct: 1   MLTRKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-------GVFPTGN 113
             A     + Q              + +       PP  +    +        G    G 
Sbjct: 61  ARALEVVKLPQQATTAAPPKGRGAFRPQVFEGGGTPPPAATAPANDSRELPILGRIAAGT 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + +     R P         +    + Q  SM       GD +I+        G+ ++
Sbjct: 121 PIDAIQHERERLPVPEAMLGGGEHYVLEVQGDSMIEAGILDGDYVIIKKGDTATSGEIVV 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K L  ++G SI L + N  Y         +E   +++
Sbjct: 181 AL-VGEEATLKRL-RKKGGSIALEAANPKYETRIFGPDQVEVQGKLV 225


>gi|257056735|ref|YP_003134567.1| SOS-response transcriptional repressor, LexA [Saccharomonospora
           viridis DSM 43017]
 gi|256586607|gb|ACU97740.1| SOS-response transcriptional repressor, LexA [Saccharomonospora
           viridis DSM 43017]
          Length = 235

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 23/219 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNRWPSTESIFKI 61
            +K+ E I    +++   PS   +    GL  TS   ++ K    +G  R          
Sbjct: 29  QQKVLEVIRTWVDKYGYPPSVREIGEAVGLTSTSSVSHQLKALQRKGYLR-------RDA 81

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                  +  L         T+   E+ +P   F P          V    +  +   +P
Sbjct: 82  NRPRAVGVLALDSEHPIPPTTSATAERSMPQPAFVPLVGRIAAGKPVLAEESIEDVYPLP 141

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +           +           SM+      GD +++        GD +      G+ 
Sbjct: 142 KDIVG-------EGDVFLLSVTGDSMIDAAITDGDWVVVRQQPTAENGDIVAAMID-GEA 193

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    I L+  N  Y        D   + +++
Sbjct: 194 TVKTFKRK-DGHIWLVPQNEAYEPI--PGDDATILGKVV 229


>gi|325292754|ref|YP_004278618.1| LexA repressor [Agrobacterium sp. H13-3]
 gi|325060607|gb|ADY64298.1| LexA repressor [Agrobacterium sp. H13-3]
          Length = 240

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 66/234 (28%), Gaps = 16/234 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+  A             S    +  K K       P + +     +   P  
Sbjct: 61  ARALEVIKLPEAYTPGARPQRGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVM 120

Query: 113 NKWNTVGVPEIRSPHNGIYAIQ------TQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165
            +            +    A+        +    + +  SM       GD +I+ +    
Sbjct: 121 GRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDSMIEAGIFDGDTVIIRNGNTA 180

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           N GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 NPGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGKLV 233


>gi|288920758|ref|ZP_06415058.1| SOS-response transcriptional repressor, LexA [Frankia sp. EUN1f]
 gi|288347834|gb|EFC82111.1| SOS-response transcriptional repressor, LexA [Frankia sp. EUN1f]
          Length = 249

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 20/225 (8%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTE 56
            + ++  I E I    E+    PS   +    GL  TS   ++ K    +G   R P+  
Sbjct: 30  LTQRQKGILEVIRAAVEQRGYPPSVREIGEAVGLTSTSSVAHQLKVLQEKGFLRRDPNRP 89

Query: 57  SIFKILAATNETICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
              ++L    +     L                E     + P          +       
Sbjct: 90  RAMEVLPIGGQKAGARLRSAGGRPAEVGGAVAAEAGTPTYVPLIGRIAAGGPILAEQAVE 149

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +   +P            +      K    SM+      GD +++      + G+ +   
Sbjct: 150 DVYPLPREIVG-------EGTLFLLKVVGQSMINAAICDGDYVVVRQQPVADNGEIVAAM 202

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G+   K    +R   + L   N  +        D   + RI+
Sbjct: 203 ID-GEATVKRF-RQRDGRVWLAPENPAFSDI--PAEDATILGRIV 243


>gi|87200045|ref|YP_497302.1| LexA repressor [Novosphingobium aromaticivorans DSM 12444]
 gi|123763475|sp|Q2G6Q5|LEXA_NOVAD RecName: Full=LexA repressor
 gi|87135726|gb|ABD26468.1| SOS-response transcriptional repressor, LexA [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 234

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 56/227 (24%), Gaps = 12/227 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--R 51
           M +    ++   I    E   ++PS   +     L   S      +  +  G   R   R
Sbjct: 1   MLTRKQHELLTFIQTRLEDSGISPSFEEMKEALDLKSKSGVHRLISALEERGFIRRLPNR 60

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             + E + +  +A  +          +                 P +        G    
Sbjct: 61  ARALEVLRQPDSAVGKAAPVSQREAANTNSALPPLRAAPKAAPAPANDVIELPLHGKIAA 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
           G     +       P         +    +    SM       GD  ++        G+ 
Sbjct: 121 GVPIEALETTATL-PVPAALLGAGEHYALEVSGDSMVEAGIFDGDYALVRKTDVARDGEI 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           ++   R  +   K L   +   + L   N  Y        ++    +
Sbjct: 180 VVALVRGEEATLKYLHREK-GMVRLDPANAAYDPQYYRPEEVAVQGK 225


>gi|148261865|ref|YP_001235992.1| LexA repressor [Acidiphilium cryptum JF-5]
 gi|326405370|ref|YP_004285452.1| LexA repressor [Acidiphilium multivorum AIU301]
 gi|166224548|sp|A5G2J1|LEXA_ACICJ RecName: Full=LexA repressor
 gi|146403546|gb|ABQ32073.1| SOS-response transcriptional repressor, LexA [Acidiphilium cryptum
           JF-5]
 gi|325052232|dbj|BAJ82570.1| LexA repressor [Acidiphilium multivorum AIU301]
          Length = 231

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 60/226 (26%), Gaps = 8/226 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   ID+   R   +PS    K  LD  S +   R       R      +  
Sbjct: 1   MLTRKQHELLVYIDQHLRRTGCSPSFEEMKEALDLKSKSGIHRLIGALEERGFLRRHKHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKK----EKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            + L           D P +       +     +        P+ +      G    G  
Sbjct: 61  ARALEVLRLPSDAAADRPDTGFAPNVIRGDFTARLQGARAADPAAAITLPLYGRIAAGQP 120

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
              +   +             +    +    SM+      GD  I+        G  ++ 
Sbjct: 121 IEALREHQAEIEIPASLVGPGEHYALEVAGDSMVDAGILDGDTAIIRRGETAETGQIVVA 180

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                ++  K L  R   +  L   N  Y +       ++   R++
Sbjct: 181 LIDDVEVTLKRLRRRGNST-ALEPANPRYEIRIFPAERVKVQGRLV 225


>gi|163796784|ref|ZP_02190742.1| hypothetical protein BAL199_13618 [alpha proteobacterium BAL199]
 gi|159178038|gb|EDP62585.1| hypothetical protein BAL199_13618 [alpha proteobacterium BAL199]
          Length = 222

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 17/224 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
              + + +   A +  +    +A  A ++ +      R    GR+  P+ E + KI A  
Sbjct: 2   QTTLADRLRARARQIGMNAREVAEDARVNRSFVYDIMR----GRSEHPNLEKLDKIAATL 57

Query: 66  NETICQ------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                        +            +   IP +    S  GG   +     G  +    
Sbjct: 58  KVDRNWLLHGKGEIQGDEPLTHKEPDEFISIPSVEVTASMGGGTIVANEVAIGEPY---H 114

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                  H  + A          +  SM+P  + GD+++++    +     + +      
Sbjct: 115 FKSSWIAHR-LRANPANLRIMHVEGDSMMPTLQDGDVVLVDLGRALPTPPGIFVLFDGMG 173

Query: 180 IVAKVLISRRGR---SIDLMSLNCCYPVDTVEMSDIEWIARILW 220
           +VAK L          + ++S N  Y        +I+ I RI W
Sbjct: 174 LVAKRLEYIPNSDPPCVRIISDNPFYTPYDRTADEIKIIGRIRW 217


>gi|309802478|ref|ZP_07696584.1| repressor LexA [Bifidobacterium dentium JCVIHMP022]
 gi|308220878|gb|EFO77184.1| repressor LexA [Bifidobacterium dentium JCVIHMP022]
          Length = 237

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +K+ +AI     +    PS   +   AGL  P+S  ++ +    +G  R  + +     
Sbjct: 24  QRKVLDAIKTHLAQRGFAPSFREIGEAAGLKSPSSVKHQLQVLEEKGFIRMSANKGRAIE 83

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +                   T     + I   +  P          +    +  + + +P
Sbjct: 84  VVDPEGPASGNGVAEVIPFPTGVDSSESIMGSHDVPLVGRIAAGVPITAEQHIDDVMRLP 143

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E  +               +    SM+      GD +++        GD +       + 
Sbjct: 144 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQHTAENGDIVAALLD-DEA 195

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + L+  N  Y     + +  E + +++
Sbjct: 196 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 231


>gi|307295058|ref|ZP_07574900.1| transcriptional repressor, LexA family [Sphingobium
           chlorophenolicum L-1]
 gi|306879532|gb|EFN10750.1| transcriptional repressor, LexA family [Sphingobium
           chlorophenolicum L-1]
          Length = 228

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 49/221 (22%), Gaps = 6/221 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +   +++   I    E   ++PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTPKQQELLSFIQTRLEEGGVSPSFEEMKEALDLRSKSGIHRLINALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNT 117
            + L                   +               +         G    G     
Sbjct: 61  ARALEVLKLPEAMHRAPKVVAPASAPLATGSAVSKPPVAANDIVEIPMHGRIAAGVPIEA 120

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           +   +                  +    SM       GD  ++        G  ++    
Sbjct: 121 LE-GQNMLSVPAALLGTGDHYALEVAGDSMVEAGILDGDFALIQRTDVAREGQIVVALID 179

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
             +   K    R G+ + L   N  Y     +   +    +
Sbjct: 180 ENEATLKYF-RREGQKVRLDPANGAYEPQYYDPRQVRIQGK 219


>gi|116054339|ref|YP_788784.1| transcriptional regulator PrtR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589560|gb|ABJ15575.1| transcriptional regulator PrtR [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 256

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + +     NL    LA  AG+   + +K      +      ST  + +I AA   +  
Sbjct: 14  ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117
            L     +    +     +   L   P                   +       G     
Sbjct: 68  WLQTGEGTPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTA 127

Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           V   E R      YA         +     +    SM PL   G  + +++A        
Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222
           +      G +  K +    G  I L S N   YP +     D     I  I  + W S
Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244


>gi|297584124|ref|YP_003699904.1| LexA family transcriptional repressor [Bacillus selenitireducens
           MLS10]
 gi|297142581|gb|ADH99338.1| transcriptional repressor, LexA family [Bacillus selenitireducens
           MLS10]
          Length = 207

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 64/226 (28%), Gaps = 33/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   S   K I + I    +     PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MKKLSTRQKSILDFIRDQVQARGYPPSVREIGEAVGLASSSTVHGHLSRLEKKGYIRR-- 58

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                     T     +L+         T      IP++    +GS            N 
Sbjct: 59  --------DPTKPRAIELIQKDRYGSEITSSPSISIPVVGKVTAGSPIT------AIENV 104

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
              + +P         +    +    +    SM       GD ++++     N GD ++ 
Sbjct: 105 EEYLPMPVS-------FVQDEESFILEISGDSMIEAGIFNGDFVVVHPQSTANNGDIVVA 157

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +   + L   N       +   ++  + R++
Sbjct: 158 MTDEDEATVKRFFKEKD-HVRLQPENASLQPIIL--ENVTILGRVI 200


>gi|156974239|ref|YP_001445146.1| hypothetical protein VIBHAR_01954 [Vibrio harveyi ATCC BAA-1116]
 gi|156525833|gb|ABU70919.1| hypothetical protein VIBHAR_01954 [Vibrio harveyi ATCC BAA-1116]
          Length = 221

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 70/215 (32%), Gaps = 17/215 (7%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +   +T + LA   G+  ++           +NR PS E++  I+     T    
Sbjct: 9   VKARMKEVGITQNALAEMMGVSQSAIAHWLN-----KNREPSIENVAAIMKCVGLTHM-- 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNG 129
           +          +     +  L   P+    F        G     +    + EI   H  
Sbjct: 62  MLDSDGFIDYPDDSVANVKKLDIQPTYQKSFPVLSSVQAGQWHEAIEPYSIEEISEWHPT 121

Query: 130 IYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKV 184
                 +      Q  SM       + +G ++++++ +    G  ++       +   K 
Sbjct: 122 TERCSERCFWLTVQGDSMTSPTGFSFPEGTMVLVDTEVDAENGKLVVAKLTDVNEATFKK 181

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            I   G+   L +LN  +P+  +  +  + I  ++
Sbjct: 182 FIVDSGQKY-LKALNPAFPILPINGN-CKIIGVVI 214


>gi|220927204|ref|YP_002502506.1| LexA repressor [Methylobacterium nodulans ORS 2060]
 gi|254809101|sp|B8IN87|LEXA_METNO RecName: Full=LexA repressor
 gi|219951811|gb|ACL62203.1| SOS-response transcriptional repressor, LexA [Methylobacterium
           nodulans ORS 2060]
          Length = 240

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 64/235 (27%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     +   I +      + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQLDLLRFIQQRMRETGVPPSFDEMKDALDLKSKSGIHRLITALEERGFLRRLPNR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-------GSGGFFD 105
                + +I  A      +++    S                 P S        S     
Sbjct: 61  ARAIEVIRIPDAVVPPSGEVVRFTPSVVEGGRTAAPAAKAAPMPSSLGSDDNGRSISIPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
            G    G   + +         +  +    +    + +  SM       GD++++     
Sbjct: 121 MGRIAAGTPISAIQSQSRTVAMSPDFLAGGEHYALEVRGDSMIEAGILDGDLVVIRRQDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N GD ++      +   K L  R G SI L + N  Y    +    +    R++
Sbjct: 181 ANTGDIVVALIDDEEATLKRLRRR-GSSIALEAANPAYETRVLGPDRVRIQGRLV 234


>gi|313111743|ref|ZP_07797536.1| transcriptional regulator PrtR [Pseudomonas aeruginosa 39016]
 gi|310884038|gb|EFQ42632.1| transcriptional regulator PrtR [Pseudomonas aeruginosa 39016]
          Length = 256

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + +     NL    LA  AG+   + +K      +      ST  + +I AA   +  
Sbjct: 14  ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117
            L     +    +     +   L   P                   +       G     
Sbjct: 68  WLQTGEGTPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTA 127

Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           V   E R      YA         +     +    SM PL   G  + +++A        
Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222
           +      G +  K +    G  I L S N   YP +     D     I  I  + W S
Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244


>gi|159037047|ref|YP_001536300.1| LexA family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915882|gb|ABV97309.1| transcriptional repressor, LexA family [Salinispora arenicola
           CNS-205]
          Length = 258

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 61/219 (27%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            ++I E I    ERH   PS   +    G + P+S   + K    +G  R          
Sbjct: 57  QRRILEFIRTWVERHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLR---------- 106

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                     +   P  D    E      P   + P          +       +   +P
Sbjct: 107 --RDPNRPRAVDVRPPGDPLDDEATRSHRPTPAYVPMLGRIAAGGPILAEQAVEDVFPLP 164

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       + +    + +  SML      GD +++        GD +      G+ 
Sbjct: 165 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPTAESGDIVAAMLD-GEA 216

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    R    + LM  N  +        D   + R++
Sbjct: 217 TVKTYRRR-DGHVWLMPQNPAFDPI--PGDDATIMGRVV 252


>gi|289675330|ref|ZP_06496220.1| S24 family peptidase [Pseudomonas syringae pv. syringae FF5]
          Length = 217

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 64/217 (29%), Gaps = 19/217 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +        L+ + L+   G+   +    +           +  ++ K L  +     
Sbjct: 5   DRLRARMTELKLSATDLSASIGVSKATITFWRNGTNGATGS--NLMALAKALRCSP---- 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIRSPHNG 129
                  +        E     +   P+    +        G     V   P+  S    
Sbjct: 59  ---QWLETGKGEATDSEPSNVAMISQPAQMYSYPVVSWVAAGAWTEAVQPFPDGFSDRYD 115

Query: 130 I--YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182
           +  Y  +      + +  SM     P   +G  +++++ + V  G  ++     + +   
Sbjct: 116 VSDYKAKGAAFWLEVKGDSMTSTSAPSIPEGSQILVDTEVDVRPGKLVIAKLADSNEATF 175

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L+   G    L  LN  YP       D + I  ++
Sbjct: 176 KKLVEDGGVRY-LKPLNPAYPTVQCS-DDCKIIGVVV 210


>gi|238855030|ref|ZP_04645359.1| SOS-response transcriptional repressor [Lactobacillus jensenii
           269-3]
 gi|282934070|ref|ZP_06339350.1| SOS-response transcriptional repressor [Lactobacillus jensenii
           208-1]
 gi|238832401|gb|EEQ24709.1| SOS-response transcriptional repressor [Lactobacillus jensenii
           269-3]
 gi|281301872|gb|EFA94136.1| SOS-response transcriptional repressor [Lactobacillus jensenii
           208-1]
          Length = 225

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 60/218 (27%), Gaps = 15/218 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKIL-AA 64
             + +A+    ++ +++ + L  K G+   + +  +      +     +  ++  +    
Sbjct: 12  NNLAKALKEYRKKQHISQTELGEKLGVSKQTVSYWESKKKSPKMSAVINISNLIGVSVKE 71

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                  +           E            P          +    N  + V +    
Sbjct: 72  LMFGTSDVAYSNEDLSMLHEPNNNYQTNSSIIPILGTIACGEPILAEQNIEDYVSLVP-- 129

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVA 182
                  +        K +  SM P    G I I+     V  G+   +L+     +   
Sbjct: 130 -------SDDATYFGLKCRGHSMEPTIHDGAIAIIRQQPTVEDGEIAAVLVGEDANEATL 182

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
           K +      +I L+  N  +        D I  + + +
Sbjct: 183 KRV-RHVNNAILLVPDNENFEPILGTKKDPIRIVGKAV 219


>gi|306822416|ref|ZP_07455794.1| repressor LexA [Bifidobacterium dentium ATCC 27679]
 gi|304553961|gb|EFM41870.1| repressor LexA [Bifidobacterium dentium ATCC 27679]
          Length = 244

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +K+ +AI     +    PS   +   AGL  P+S  ++ +    +G  R  + +     
Sbjct: 31  QRKVLDAIKTHLAQRGFAPSFREIGEAAGLKSPSSVKHQLQVLEEKGFIRMSANKGRAIE 90

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +                   T     + I   +  P          +    +  + + +P
Sbjct: 91  VVDPEGPASGNGVAEVIPFPTGVDSSESIMGSHDVPLVGRIAAGVPITAEQHIDDVMRLP 150

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E  +               +    SM+      GD +++        GD +       + 
Sbjct: 151 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQHTAENGDIVAALLD-DEA 202

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + L+  N  Y     + +  E + +++
Sbjct: 203 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 238


>gi|291283823|ref|YP_003500641.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290763696|gb|ADD57657.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 224

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 21/211 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNE 67
           +            +T   +A  AG+   S    +     GR R P +   + K L  +  
Sbjct: 20  LAARFKARRLELGMTQVEVANSAGVSQQSIESIE----SGRTRKPRNLLDLAKALKCSP- 74

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                L    +     E   + IP+L +  +G           TG  +  +         
Sbjct: 75  ---DWLLNGKNIMPLAEISTRRIPILSYVQAGELTEARDITDLTGE-FEYILADSD---- 126

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                I       +    SM P +++GDI+I++  +    G+ ++ K    +   K    
Sbjct: 127 -----IPETCFALRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNDGHEATFKKYRP 181

Query: 188 RRGRS--IDLMSLNCCYPVDTVEMSDIEWIA 216
                   +L+ LN  YP+      +++ I 
Sbjct: 182 LGIGIDDFELIPLNPDYPIFRSADMNLQIIG 212


>gi|117928686|ref|YP_873237.1| LexA repressor [Acidothermus cellulolyticus 11B]
 gi|171460816|sp|A0LUZ1|LEXA_ACIC1 RecName: Full=LexA repressor
 gi|117649149|gb|ABK53251.1| SOS-response transcriptional repressor, LexA [Acidothermus
           cellulolyticus 11B]
          Length = 275

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 11/221 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            ++I + I     R    PS   +    GL  TS    +   ++ +    R P+     +
Sbjct: 53  QRRILDVIRDSVRRRGYPPSMREIGEAVGLTSTSSVAHQLMVLQRKGFLRRDPNRPRAVE 112

Query: 61  I-LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           I  A +          P +D   + ++    P               G    G       
Sbjct: 113 IRSAESAVPDASAGHSPAADRAPSARRPPRGPSPIDSNPDVVAVPLVGRIAAGGPALAEQ 172

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           + E   P       +      + +  SM+      GD +++        GD +      G
Sbjct: 173 LIEDVVPLPRQLVGEGTLFLLQVKGDSMVDAAICDGDWVVVRQQPVAENGDIVAAMID-G 231

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K    R    I LM  N  Y        +   + R++
Sbjct: 232 EATVKTFKRRGA-HIWLMPHNPQYEPI--PGDEATILGRVV 269


>gi|332160963|ref|YP_004297540.1| putative repressor CI from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665193|gb|ADZ41837.1| Putative repressor CI from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862119|emb|CBX72283.1| hypothetical protein YEW_AK02200 [Yersinia enterocolitica W22703]
          Length = 225

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 82/222 (36%), Gaps = 25/222 (11%)

Query: 5   SHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + + I   I  +  ++ ++  + L++K  +  ++ ++       G    P   ++ +I  
Sbjct: 4   TLQNIQNNIKYLMHKNGISSVTELSQKIKMQQSTMHRLL----TGEVNDPKYGTLKQIAD 59

Query: 64  ATNETICQ----------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
               ++               +    G   E   ++IP++     G+GGF++   +P G+
Sbjct: 60  YFRVSVIDLTECNLMDGTAKTVIDVGGDPHEMHFRDIPVVGNAQLGNGGFWNDMEYPIGS 119

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
               +  P          +        K    SM+P  ++G+ +I+        GD +L+
Sbjct: 120 GDGFIRWP----------SYDPDAYALKCVGDSMMPRIKEGEFVIIEPGHNYIPGDEVLV 169

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
                +++ K  +  R   I L+ +N  +       + +  I
Sbjct: 170 VTDKDEVMVKTFLFERDGYIHLLPVNEDHAPIKYPRTAVVKI 211


>gi|294668808|ref|ZP_06733901.1| putative repressor protein [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309325|gb|EFE50568.1| putative repressor protein [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 244

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 34/231 (14%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
           A+R   + S L R+  +   +  K  + G E     PST ++ KI  A    +  L    
Sbjct: 16  AKRLG-SVSELCRRVDVAYPTATKWVKEGAE-----PSTTNLIKIADAAGVNLLWLATGQ 69

Query: 77  FSDGRTTEKKEKEI----------------PLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +  +   +  K+                                +     G+ +     
Sbjct: 70  GAMLKEDSEDGKQPAAYDGDQYAQPVLDTLNRPVDIEEFVFIPRYNVKVAAGHGYIAEDE 129

Query: 121 PEIRSPHNGIYAI-------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
               +     Y I           +  K    SM  +   GD ++++ +     G+ L +
Sbjct: 130 KPRFTMAFRKYWIRVHLRTDPKSLSVVKVAGDSMEGILFDGDNVLVDHSRN-QPGNGLYV 188

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILW 220
                +++ K   +  G  + + S N  Y    + ++D    +E I +++W
Sbjct: 189 LRIGEELIVKRTQTLPGNHLLVSSANEAYQPFELNLADETSGVEIIGKVVW 239


>gi|77457362|ref|YP_346867.1| phage repressor [Pseudomonas fluorescens Pf0-1]
 gi|77381365|gb|ABA72878.1| putative regulatory protein of cro/cI family [Pseudomonas
           fluorescens Pf0-1]
          Length = 270

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 79/248 (31%), Gaps = 33/248 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + +   +  + ++H ++P+ L R+ G+  ++ ++       G+   PS + I K
Sbjct: 24  MRVMQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISK 79

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-----------GSGGFFDSGVF 109
           I      +  QL             +++    L                 S  F      
Sbjct: 80  IAEYFAVSTDQLRGRADVAPAANAGRDELHSELKDISLWDDDTPVDDDEVSVPFLREVEL 139

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAI 163
             G+    +   E  S   G  +++              +  SMLP+ R G  + +N+  
Sbjct: 140 AAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGK 199

Query: 164 ----QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV-----EMSDIE 213
                +  GD L      G +  K L       I L S N   +P +       +   I 
Sbjct: 200 CGIGDIIDGD-LYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYSFQDMQEEQIV 257

Query: 214 WIARILWA 221
            +  + W 
Sbjct: 258 ILGHVFWW 265


>gi|15595808|ref|NP_249302.1| transcriptional regulator PrtR [Pseudomonas aeruginosa PAO1]
 gi|107099597|ref|ZP_01363515.1| hypothetical protein PaerPA_01000610 [Pseudomonas aeruginosa PACS2]
 gi|218889352|ref|YP_002438216.1| transcriptional regulator PrtR [Pseudomonas aeruginosa LESB58]
 gi|254243705|ref|ZP_04937027.1| transcriptional regulator PrtR [Pseudomonas aeruginosa 2192]
 gi|2498811|sp|Q06553|PRTR_PSEAE RecName: Full=HTH-type transcriptional regulator prtR; AltName:
           Full=Pyocin repressor protein
 gi|9946485|gb|AAG04000.1|AE004497_7 transcriptional regulator PrtR [Pseudomonas aeruginosa PAO1]
 gi|286176|dbj|BAA02198.1| negative regulator of pyocin genes [Pseudomonas aeruginosa]
 gi|5725148|dbj|BAA83146.1| prtR [Pseudomonas aeruginosa]
 gi|5725181|dbj|BAA83132.1| PRF4 [Pseudomonas aeruginosa]
 gi|126197083|gb|EAZ61146.1| transcriptional regulator PrtR [Pseudomonas aeruginosa 2192]
 gi|218769575|emb|CAW25335.1| transcriptional regulator PrtR [Pseudomonas aeruginosa LESB58]
          Length = 256

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + +     NL    LA  AG+   + +K      +      ST  + +I AA   +  
Sbjct: 14  ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117
            L     +    +     +   L   P                   +       G     
Sbjct: 68  WLQTGEGAPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTA 127

Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           V   E R      YA         +     +    SM PL   G  + +++A        
Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222
           +      G +  K +    G  I L S N   YP +     D     I  I  + W S
Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244


>gi|329768682|ref|ZP_08260166.1| LexA repressor [Gemella haemolysans M341]
 gi|328836396|gb|EGF86061.1| LexA repressor [Gemella haemolysans M341]
          Length = 224

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 24/223 (10%)

Query: 11  EAIDRMAERHNLTPSG---LAR------KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           E I+++ +   L       LA+            +  ++         N       + K+
Sbjct: 6   ERINQIMKEKRLRQIDVLNLAKPFQEKYNIKFSKSHLSQYVNGKSNPDNEKIFL--LSKV 63

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
              T   +       +      +  E +       P          +    +  +   VP
Sbjct: 64  FGVTEAWLLGYDVHRYERIEEAKINEPQTLQGLKIPVLGTVAAGIPISAVEDILDYEEVP 123

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +           Q +    + +  SM P    GD +I+      N GD ++      D  
Sbjct: 124 QSWEN-------QGEFFGLRIKGDSMKPDINDGDTVIVRQQSTANNGDVVIALVNGDDAT 176

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219
            K         I L+S N  Y        +     +  I R++
Sbjct: 177 CKKFEKLGNG-IMLISNNSEYSPMYFSNEEVLTKPVVIIGRVV 218


>gi|158423825|ref|YP_001525117.1| LexA repressor [Azorhizobium caulinodans ORS 571]
 gi|172047964|sp|A8I825|LEXA_AZOC5 RecName: Full=LexA repressor
 gi|158330714|dbj|BAF88199.1| peptidase S24 protein [Azorhizobium caulinodans ORS 571]
          Length = 236

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 55/231 (23%), Gaps = 13/231 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----------EGR 49
           M +     +   I    +   + PS    K  LD  S +   R                R
Sbjct: 1   MLTRKQYDLLRFIHERLKETGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 50  NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            R      +    A                            +    P+        G  
Sbjct: 61  ARALEVVRLPDSAAPGLAAARSGGRGFSPSVIEGSLGRVRPVVDDEEPAAVVAVPVMGRI 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168
             G+  + +                 +    + +  SM       GD +++      + G
Sbjct: 121 AAGSPISAIQTRSNTLNLPPEMLGTGEHFALEVRGDSMIEAGILDGDTVLIRKCDTADTG 180

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++      +   K L  +   SI L + N  Y         +    R++
Sbjct: 181 DIIVALVDDEEATLKRLRRKGA-SIALEAANPAYETRIFGPDRVRIQGRLV 230


>gi|52080407|ref|YP_079198.1| LexA repressor [Bacillus licheniformis ATCC 14580]
 gi|52785786|ref|YP_091615.1| LexA repressor [Bacillus licheniformis ATCC 14580]
 gi|319645635|ref|ZP_07999867.1| LexA repressor [Bacillus sp. BT1B_CT2]
 gi|59799805|sp|Q65J42|LEXA_BACLD RecName: Full=LexA repressor
 gi|52003618|gb|AAU23560.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52348288|gb|AAU40922.1| LexA [Bacillus licheniformis ATCC 14580]
 gi|317392521|gb|EFV73316.1| LexA repressor [Bacillus sp. BT1B_CT2]
          Length = 207

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 35/227 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S ++  I   I    +R    PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQLDILRFIKEEVKRKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                   T E+       +   P        + +    N
Sbjct: 61  TKPRAIEILD------------------TEEEIHIPKNQVVNVPVIGKVTAGTPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +PE  +P              +    SM+       D +I+      N GD ++
Sbjct: 103 IEEYFPLPERLAPP------DEHVFMLEIMGESMIDAGILDQDYVIVKQQNTANNGDIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         I L   N       ++   +  + +++
Sbjct: 157 AMTEDDEATVKRFFKEE-THIRLQPENPTMEPIILQN--VTILGKVI 200


>gi|294010830|ref|YP_003544290.1| repressor LexA [Sphingobium japonicum UT26S]
 gi|292674160|dbj|BAI95678.1| repressor LexA [Sphingobium japonicum UT26S]
          Length = 228

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 47/221 (21%), Gaps = 6/221 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +   +++   I    E   ++PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTPKQQELLSFIQTRLEEGGVSPSFEEMKEALDLRSKSGIHRLINALEERGFIRRLPNR 60

Query: 59  FKILAATN-ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
            + L                   +        +       +        G    G     
Sbjct: 61  ARALEVLKLPDAMHRAPKLAVPAKAPLTSGPALSQPPVAANDILEIPLHGRIAAGVPIEA 120

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           +   +                  +    SM       GD  ++        G  ++    
Sbjct: 121 LE-GQNMLSVPAALLGTGDHYALEVAGDSMVEAGILDGDFALIQRTDVAREGQIVVALID 179

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
             +   K         + L   N  Y     +   +    +
Sbjct: 180 ENEATLKYFRREGP-KVRLDPANSAYEPQIYDPRQVRIQGK 219


>gi|297562266|ref|YP_003681240.1| transcriptional repressor, LexA family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846714|gb|ADH68734.1| transcriptional repressor, LexA family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 239

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 52/224 (23%), Gaps = 25/224 (11%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +   + +   I R        PS   +    GL   S                S   
Sbjct: 29  PKLTARQQSVLNCIQRYVRERGFPPSIREIGEAVGLSSPS----------------SVAH 72

Query: 58  IFKILAATNETICQLLDLPFSD-GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
             K+L                +         + +       S +      G    G    
Sbjct: 73  QLKVLQRKGYLHRDQNRPRAVELRTPGRASGRTLVPEDIDLSRAAAVPLVGRIAAGGPIL 132

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E           + +         SM       GD++++      N GD +    
Sbjct: 133 AEESVEDVLALPRQLVGEGRLFMLTVVGDSMTDAAITDGDMVVVRQQQDANNGDIVAALL 192

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   KVL    G  + LM  N  Y        D   + +++
Sbjct: 193 D-EEATVKVLRREEGGHVWLMPRNEAYEPI--NGDDATILGKVV 233


>gi|15802659|ref|NP_288686.1| putative repressor protein CI of prophage CP-933V [Escherichia coli
           O157:H7 EDL933]
 gi|12516411|gb|AAG57241.1|AE005443_9 putative repressor protein CI of prophage CP-933V [Escherichia coli
           O157:H7 str. EDL933]
          Length = 215

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 28/226 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H+ I E I  + E   L+ + LA+  G    S    +    E   R  S +    
Sbjct: 1   MKTM-HEIIGERIKSLREAKGLSQAQLAKLCGWAAPS----RLGNYELGTRKVSADDALV 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + AA   +  +++         ++   ++     F    +G F + G +   +    V  
Sbjct: 56  LGAALGVSPAKIMFGED-----SDAVFRQYEYPLFSSVQAGPFXEVGXYTASDAKAWVPT 110

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174
               S          +    + +  SM       P + +G +++++ A  V  GD  +  
Sbjct: 111 TTKASE---------KAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVAS 161

Query: 175 PRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K      G S  L+ LN  Y     + S    I +++
Sbjct: 162 ANGDSEATFKKYEKDAGVSY-LVPLNPAYRTLDCDHS-CRIIGKVV 205


>gi|75761233|ref|ZP_00741217.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218898797|ref|YP_002447208.1| LexA repressor [Bacillus cereus G9842]
 gi|228902202|ref|ZP_04066364.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 4222]
 gi|74491268|gb|EAO54500.1| Phage transcriptional repressor [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218540796|gb|ACK93190.1| LexA repressor [Bacillus cereus G9842]
 gi|228857437|gb|EEN01935.1| Phage transcriptional repressor [Bacillus thuringiensis IBL 4222]
          Length = 239

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +    +    A K GL PT+  +S      G+    S +++ K+      T  
Sbjct: 25  EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 80

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L  L   +  T +++      +    S        G    G         E   P    
Sbjct: 81  DLEKLATQEDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEENIEGYLPMLST 140

Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +   + +      + TSM   +  G  +++     V  G   ++K    D   K +    
Sbjct: 141 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 199

Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
           G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 200 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 235


>gi|320528015|ref|ZP_08029181.1| helix-turn-helix protein [Solobacterium moorei F0204]
 gi|320131641|gb|EFW24205.1| helix-turn-helix protein [Solobacterium moorei F0204]
          Length = 229

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 17/219 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           +++  + E H+L+   LA   G+  ++    +        R P+ E++  I    N  + 
Sbjct: 7   KSLKSLREEHHLSQRQLADALGVAYSTIGMYESGQ-----REPNYETLEIIADFFNVDMN 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNG 129
             L        +   +  EIPL                   G+    +   P+       
Sbjct: 62  -YLLGKSIIKNSYASELTEIPLDNIIFDDYFPLHYWSGLSAGSFEELIEAEPDSVVYVPI 120

Query: 130 IYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAKV 184
            +   + +    K   TSM  +   G I++        I+ + G  ++     G    K 
Sbjct: 121 TFQNKKKRLHAFKINGTSMNNVIPDGSIVVSEDNYNNAIKYSDGTIVVAFMD-GTATVKR 179

Query: 185 LISRRGRSIDLMSLNCC--YPVDTVEMS-DIEWIARILW 220
           L      SI L   +    +    V    ++  I +++W
Sbjct: 180 LYY-GEDSITLSPDSTDKSHMPIIVPKDKELVIIGKVIW 217


>gi|126737889|ref|ZP_01753619.1| LexA repressor [Roseobacter sp. SK209-2-6]
 gi|126721282|gb|EBA17986.1| LexA repressor [Roseobacter sp. SK209-2-6]
          Length = 240

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I R  +   + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHRRLKADGVPPSFDEMKIALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATN------ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
                I ++  +         +     ++      +         +              
Sbjct: 61  ARAIEILRLPESLGGSADSATSHGFKPEVLNGGRASAPAAAPSASVTTASTPAVLELPVM 120

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
           G    G     +     +        +        + +  SM+      GDI+++     
Sbjct: 121 GRIAAGVPIEAINQVSHQIAIPQAMLSSAGHHYALEVRGDSMIDAGINDGDIVVIRETDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            + GD ++   +  +   K +  R   +I L + N  Y   T     ++   R++
Sbjct: 181 ADDGDIVVALVQNEEATLKRIFRR-DGAIALEAENPAYETRTYPEDQVQIQGRLV 234


>gi|307942169|ref|ZP_07657520.1| repressor LexA [Roseibium sp. TrichSKD4]
 gi|307774455|gb|EFO33665.1| repressor LexA [Roseibium sp. TrichSKD4]
          Length = 239

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 18/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----- 55
           M +    ++   I+   +   + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQYELLMFINERLKETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 56  ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                     ESI   L +         ++        + + ++        + +     
Sbjct: 61  ARAMEVVRLPESIAPGLGSPRPRGSFSPEVIEGSLGKPQAEARQPSAP-VVEAQTTEIPV 119

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
            G    G     +               + +    + +  SM       GD +++  +  
Sbjct: 120 MGRIAAGVPIEAIQTHSHSISVPPELIGKGEHYALEVRGDSMIEAGILDGDTVLIRRSDS 179

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            + GD ++      +   K L  +   SI L + N  Y         +    +++
Sbjct: 180 ADSGDIVVALVDDEEATLKRLRKKGA-SIALEAANPAYETRIFGPGRVRVQGKLV 233


>gi|312135294|ref|YP_004002632.1| transcriptional repressor, lexa family [Caldicellulosiruptor
           owensensis OL]
 gi|311775345|gb|ADQ04832.1| transcriptional repressor, LexA family [Caldicellulosiruptor
           owensensis OL]
          Length = 202

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I +  +     P+   +    GL  TS       R   +G   R PS     
Sbjct: 8   KQEEILEFIKKRIKEKGYPPAVREICEATGLKSTSTVHGHLTRLEKKGYIRRDPSKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                       +      +   P          +    N   T+ 
Sbjct: 68  EIVD---------------------DEFYVHRNVVQLPLVGKVTAGEPILAVENIEETMT 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P                   + +  SM        DI+I+        GD ++      
Sbjct: 107 LPYDLVGTE-------DAFLLRVRGDSMIEAGIFDNDIIIVRRQNIAENGDIVVALID-D 158

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N       V+  D++ + +++
Sbjct: 159 EATVKRFYKEHD-HIRLQPENKAMEPIIVK--DVKILGKVI 196


>gi|92117275|ref|YP_577004.1| LexA repressor [Nitrobacter hamburgensis X14]
 gi|123265283|sp|Q1QMK3|LEXA_NITHX RecName: Full=LexA repressor
 gi|91800169|gb|ABE62544.1| SOS-response transcriptional repressor, LexA [Nitrobacter
           hamburgensis X14]
          Length = 233

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 58/228 (25%), Gaps = 10/228 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++   I+   +   + PS   +     L   +  ++      +R  I      
Sbjct: 1   MLTRKQYELLRFINERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+         +    P        K       +             G    G
Sbjct: 61  ARAIEVIKLPEVAGNGGGRRGFTPSVIEGNLGKVRPSGGGVVDDAERPVAVPVMGRIAAG 120

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171
                +                 +    + +  SM       GD+ ++        GD +
Sbjct: 121 TPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVEAGILDGDMALIQRNETAETGDIV 180

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K    R   SI L   N  Y V  +  + ++   +++
Sbjct: 181 VALIDDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVQIQGKLI 227


>gi|254237175|ref|ZP_04930498.1| transcriptional regulator PrtR [Pseudomonas aeruginosa C3719]
 gi|296387119|ref|ZP_06876618.1| transcriptional regulator PrtR [Pseudomonas aeruginosa PAb1]
 gi|126169106|gb|EAZ54617.1| transcriptional regulator PrtR [Pseudomonas aeruginosa C3719]
          Length = 256

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 65/238 (27%), Gaps = 33/238 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + +     NL    LA  AG+   + +K      +      ST  + +I AA   +  
Sbjct: 14  ARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQ------STRKLIEIAAALGVSPV 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNKWNT 117
            L     +    +     +   L   P                   +       G     
Sbjct: 68  WLQTGEGAPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTA 127

Query: 118 VGVPEIRSPHNGIYA-------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           V   E R      YA         +     +    SM PL   G  + +++A        
Sbjct: 128 VREIEGR-KLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGE 186

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARILWAS 222
           +      G +  K +    G  I L S N   YP +     D     I  I  + W S
Sbjct: 187 IYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWS 244


>gi|284007338|emb|CBA72703.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 232

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   +   + + I  + +   + + + L+R+ G+   + ++       G  + P  E + 
Sbjct: 1   MGMGTQ-NLNKNIKILMDEKGVKSVAELSRRIGMPQPTLHRMLN----GEVKSPRLEIVQ 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEI----------------PLLYFPPSGSGGF 103
           KI         +LL    S    +E+++                   P+L     G GG+
Sbjct: 56  KIANFFRVEANELLYKDLSTTNISEERDTTSFTRIELNAIPFNFCKVPVLGTTQLGGGGY 115

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
           ++S      + +  +  P                   + Q  SM+P  + G+ +++    
Sbjct: 116 WNSKESSIEHDYGYIVWPTE----------DKDAFALRCQGESMMPRIQHGEFVVMEPNY 165

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   GD +L++   G ++ K  + +R   I L+S+N  +P   +  S I+ I
Sbjct: 166 KYKPGDEVLVQDDNGQVMVKTFLYQRDDVIHLLSINADHPPIRLAASTIKKI 217


>gi|242280573|ref|YP_002992702.1| phage repressor [Desulfovibrio salexigens DSM 2638]
 gi|242123467|gb|ACS81163.1| putative phage repressor [Desulfovibrio salexigens DSM 2638]
          Length = 218

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 13/216 (6%)

Query: 11  EAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +R+ E  +++  + LAR+ G+   + +  K+ G     RW    S+   L +T    
Sbjct: 8   SFFERLKEHTDISTQAQLARELGVGRAAVSLVKKKGAVP-PRWILELSVRYNLDSTWLES 66

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                 P  +      +   IP +    S  GG F++G    G         +      G
Sbjct: 67  GLGSPRPEVNAVEFADEFSRIPKVAARLSAGGGSFETG----GEIEGFYAFRKDWIGGKG 122

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                +     +    SM P  ++GDI++L+ + +      +        ++ K +  R 
Sbjct: 123 ---NPSDMVLMEVYGNSMEPELKEGDIVLLDQSRKDILAGGIYAVGVEDTVMVKRVEKRP 179

Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARILWAS 222
           G+ + L S N  Y    +   +   +  + +++W S
Sbjct: 180 GQ-VVLHSDNKDYAPIYLGGDELENVRVLGQVVWVS 214


>gi|269956058|ref|YP_003325847.1| SOS-response transcriptional repressor, LexA [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304739|gb|ACZ30289.1| SOS-response transcriptional repressor, LexA [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 243

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 21/220 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            +++ E I    E     P+   +    GL   S  K +   +E +    R P+     +
Sbjct: 33  QRRVLETIRASVETRGYPPTMREIGEAVGLASPSSVKHQLMTLERKGYLRRDPNRPRAME 92

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++    E        P   G   E+      +       +GG   +         +   +
Sbjct: 93  VVDPAGEAPTGDPAQPSLSGLDEEQLSAPSYVPVVGRIAAGGPILAEQL----VEDVFPL 148

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P              +    K Q  SM+      GD +++        G+ +      G+
Sbjct: 149 PRQLVG-------DGELFLLKVQGDSMVDAAICDGDWVVVRRQPVAENGEIVAAMID-GE 200

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         + L+  N  Y        + + + R++
Sbjct: 201 ATVKTF-KHDHGHLWLLPQNPNYAPI--PGDEAQILGRVV 237


>gi|257455556|ref|ZP_05620786.1| phage repressor [Enhydrobacter aerosaccus SK60]
 gi|257447022|gb|EEV22035.1| phage repressor [Enhydrobacter aerosaccus SK60]
          Length = 222

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 14/220 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   + +  +   LT   LA+K+G    + +  +        R  S+  + ++  A  
Sbjct: 3   ETIGSRVKKARKYAGLTQVELAKKSGSKQGAISDLESG------RNESSTKLVEMAEAMG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L     +      K      + + P               G+  +          
Sbjct: 57  VSAKWLATGEGNMLDQDIKVPSISNVDFIPQKIRKAPVL-NWVQAGHPADVFDNGYDEYE 115

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVL 185
           +        Q      +  SM P + +GD +++++  Q   GD ++           K  
Sbjct: 116 YFYDEGYGLQVYWLYVRGDSMNPEFFEGDKILVDAERQARAGDYVIAMVDHEAQATFKRY 175

Query: 186 IS------RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                          L+ LN  YP        I+ +  ++
Sbjct: 176 KPCGYDPNLGREYCQLVPLNDFYPTIDSRAVRIDIVGVVV 215


>gi|229104259|ref|ZP_04234930.1| Phage transcriptional repressor [Bacillus cereus Rock3-28]
 gi|228679155|gb|EEL33361.1| Phage transcriptional repressor [Bacillus cereus Rock3-28]
          Length = 223

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 12/226 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  F  K   + +  + +    +    A K GL PT+  +S      G+    S +++ K
Sbjct: 1   MVKFMEK--AKIVTHLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      T   L  L      T +++      +    S        G    G        
Sbjct: 55  VCKGLGITTDDLEVLTTKGDNTVKEEVSIYETIQNDQSNIIHIPIIGSVAAGTPIFAEEN 114

Query: 121 PEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E   P    +   + +      + TSM   +  G  +++     V  G   ++K    D
Sbjct: 115 IEGYLPMLSTFLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYD 174

Query: 180 IVAKVLISRRGRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
              K +    G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 175 ATVKKISK-SGSIITLIPLSNDPIHEPQTYDLSAEDVKIIGRVVQA 219


>gi|219681216|ref|YP_002455861.1| C2 [Salmonella enterica bacteriophage SE1]
 gi|318065925|ref|YP_004123783.1| C2 [Salmonella phage ST160]
 gi|66473831|gb|AAY46477.1| C2 [Salmonella phage SE1]
 gi|289066911|gb|ADC81122.1| C2 [Salmonella phage ST160]
          Length = 229

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 62/229 (27%), Gaps = 24/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + +++  E   ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 1   MKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A   +   L        +         P      +             G         EI
Sbjct: 55  ALGVSSEWLSTGIGPMKKDGTTPINASP----SSNTFKIDILDLEVSAGPGVINREFVEI 110

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                                       +  SM      GD+L ++ +I+   GD +   
Sbjct: 111 LRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGIYAF 170

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCY---PVDTVE-MSDIEWIARIL 219
                   K L   +   + ++S N  Y        + M+ +    +++
Sbjct: 171 LYDDTAHVKRLQKMKD-KLLVISDNKSYSAWDPIERDEMNRVFVFGKVI 218


>gi|188586129|ref|YP_001917674.1| SOS-response transcriptional repressor, LexA [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350816|gb|ACB85086.1| SOS-response transcriptional repressor, LexA [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 222

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 71/226 (31%), Gaps = 22/226 (9%)

Query: 1   MTSFSHK--KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSK--RFGIEGRNRWPS 54
           M+  S+K  +I+  I+  A ++   PS   + +  GL  TS           +G  R  S
Sbjct: 1   MSKKSNKPMQIYNFINDYASKNGYPPSVREICQGVGLSSTSTVHLHLSSLEKQGYIRRDS 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T      + + N       +   ++ +   +      +       +G      +    N 
Sbjct: 61  TRPRAIEILSKNNNKNTDQEKSNNNEKIDNEDLNTTKIPIVGQVTAG----EPILAEENI 116

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P+  S          +    + +  SM        D++I+N     N G+ ++ 
Sbjct: 117 LEYFPIPKQLSYG-------KELFMLQIKGDSMIEAGIYDSDLVIVNKQNTANNGEIIVA 169

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K         I L   N  Y        D+  I +++
Sbjct: 170 L-LEDEATVKRFYK-ENEYIRLQPENKAYSPIY--SRDVSIIGKVV 211


>gi|210632226|ref|ZP_03297243.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279]
 gi|210159684|gb|EEA90655.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279]
          Length = 222

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 65/219 (29%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  I + I R+ ++  +T   LA K  +  ++  + +          P    + K+    
Sbjct: 10  HMGISQNIKRLRKQAGMTQVELAEKLDVARSTITQWETGWS-----SPRMGMVQKLAGVF 64

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             T   +L        +               S +      G    G   +   V     
Sbjct: 65  GVTSADMLAEDSEGLPSGAMPVA-------ASSATVPLLAIGRVHAGALTDEEEVSHRVE 117

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
             + + +   +    + +   M  +  +G  ++++   +   G   +++  +   V +  
Sbjct: 118 VPSSVLSGHPRAFALEVEGDCMDRVIPEGSHVLVDPDREPGNGSIAVVETDSYQAVMRRW 177

Query: 186 ISRRGRSIDLMSL-NCCYPVDTVEMSD--IEWIARILWA 221
                 ++ L +  +           D  +  +  ++W 
Sbjct: 178 YR-GSSTLMLTADSHSEQEDMVFGPEDGPVRVVGTVVWW 215


>gi|289642424|ref|ZP_06474570.1| SOS-response transcriptional repressor, LexA [Frankia symbiont of
           Datisca glomerata]
 gi|289507769|gb|EFD28722.1| SOS-response transcriptional repressor, LexA [Frankia symbiont of
           Datisca glomerata]
          Length = 249

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 17/220 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
            +K+ E I    ER    PS   +    GL  TS   ++ K    +G   R P      +
Sbjct: 35  QRKVLEVIRDAVERRGYPPSVREIGDAVGLTSTSSVAHQLKTLEEKGFLRRDPHRPRAME 94

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L+A           P     T            + P          +           +
Sbjct: 95  VLSAQAPVRPVARQAPGVGTLTAGSSTDGPAQAAYVPVLGRIAAGGPILAEQAVEEVFPL 154

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P            +      +    SM       GD +++      + G+ +      G+
Sbjct: 155 PREIVG-------EGTLFTLRVVGDSMVNAAICDGDWVVVRQQPVADNGEIVAAMID-GE 206

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K L  R    + L   N  Y            + RI+
Sbjct: 207 ATVKTLRRR-DGHVWLEPQNPAYADI--PGDSATILGRIV 243


>gi|303327568|ref|ZP_07358009.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3]
 gi|302862508|gb|EFL85441.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3]
          Length = 230

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 25/226 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++  A+D        + + LAR  G+ P S + +++ G      W  T       A T  
Sbjct: 13  RLMRALDAA------SEAELARALGITPQSVSGARKRGEVP-PAWIQT-----CAAQTGV 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEI--- 123
               L             + +   +     +              G     V        
Sbjct: 61  NAHWLFFGSGPMRLPEAAEGELPSMQEDCDTELITVPLAEARLSAGTGSLEVSSNSNEGG 120

Query: 124 ---RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              RS          +    +    SM+P     D+++L+         RL        I
Sbjct: 121 YAFRSDFLRRKGNPRRMVLMRVSGDSMVPEIFDNDLVLLDRGQTEISPGRLYAVGFEDAI 180

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221
             K +       I L S+N  YP  +++           I R+LW+
Sbjct: 181 YIKRIDKLP-GKIILHSVNPAYPPLSLDLRGDCADQFRVIGRVLWS 225


>gi|194099007|ref|YP_002002080.1| putative phage repressor [Neisseria gonorrhoeae NCCP11945]
 gi|193934297|gb|ACF30121.1| putative phage repressor [Neisseria gonorrhoeae NCCP11945]
          Length = 228

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 69/215 (32%), Gaps = 13/215 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGI--EGRNRWPSTESIFKILAATN 66
            + +  + E    + + LA++AG   P+   +         G+ +        K+ +A N
Sbjct: 9   LQNMKNLVEEAG-SVAELAKRAGYAQPSYLYQIINQTAIQNGKPKNIGGAMARKLESAMN 67

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG---FFDSGVFPTGNKWNTVGVPEI 123
           +    L            +  + I + +   +G+ G     D    P  +    V  P  
Sbjct: 68  KAEGWLDMNHGETLPLPPEDTETIRIDHLDMAGACGGGIEADDWPSPISS----VEFPLD 123

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                      +      T+  SM P   +   +++++      GD +      G +  K
Sbjct: 124 AVRRLFSGRDTSGLKIVGTRGDSMEPTIPETSAVLIDTKADTFAGDGIYFFAYAGGLYTK 183

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIAR 217
            L       + L S N  Y    ++ +D    I R
Sbjct: 184 RLQKTPAGLLAL-SDNPLYQSFPIDENDRFRIIGR 217


>gi|315453658|ref|YP_004073928.1| hypothetical protein HFELIS_12540 [Helicobacter felis ATCC 49179]
 gi|315132710|emb|CBY83338.1| putative uncharacterized protein [Helicobacter felis ATCC 49179]
          Length = 206

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 69/212 (32%), Gaps = 16/212 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + ++   +NLT   LA K G+   S  + +           + +++ K+  A N  
Sbjct: 2   LKEKLKQLRNANNLTQEELALKCGVSLQSIKRYESEQKS----NITLDTLEKLANALNTD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +                   +    +           +  F        +   +     +
Sbjct: 58  LHFFTSTHRKVEDVVMVPYIKDVKAHIRRDKIDDDNSNMTF--------LPQSKSFLKRH 109

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                       +    SM PL ++GD+L+  +      G  + +    G+   K +  R
Sbjct: 110 FGIVSTEHLGLLQAMGNSMEPLIKEGDLLLFQNDGSCYEG-AVYVIDLGGEYYVKRISKR 168

Query: 189 RGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
               + L+S N  Y    ++ + +I  + R++
Sbjct: 169 P--EVSLISDNPAYKPIILQSLEEIIILGRVV 198


>gi|229047381|ref|ZP_04192978.1| Phage transcriptional repressor [Bacillus cereus AH676]
 gi|228723966|gb|EEL75314.1| Phage transcriptional repressor [Bacillus cereus AH676]
          Length = 239

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +    +    A K GL PT+  +S      G+    S +++ K+      T  
Sbjct: 25  EVVTRLIKEAGYSKRAFAEKIGLPPTTL-QSMLSRGIGKA---SVDNVIKVCKGLGITTD 80

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L  L   +  T +++      +    S        G    G         E   P    
Sbjct: 81  DLERLATQEDNTVKEEVSIYETIQNDQSNIIYIPIIGSVAAGTPILAEENIEGYLPMLST 140

Query: 131 YAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +   + +      + TSM   +  G  +++     V  G   ++K    D   K +    
Sbjct: 141 FLNKRKKYFYLTVKGTSMNLEFPDGSYVLVEETPYVENGQIAVVKVNGYDATVKKISK-S 199

Query: 190 GRSIDLMSL-N-CCYPVDTVE--MSDIEWIARILWA 221
           G  I L+ L N   +   T +    D++ I R++ A
Sbjct: 200 GSIITLIPLSNDPIHEPKTYDLSAEDVKIIGRVVQA 235


>gi|15827479|ref|NP_301742.1| LexA repressor [Mycobacterium leprae TN]
 gi|221229956|ref|YP_002503372.1| LexA repressor [Mycobacterium leprae Br4923]
 gi|254809104|sp|B8ZQU5|LEXA_MYCLB RecName: Full=LexA repressor
 gi|327478573|sp|Q49848|LEXA_MYCLE RecName: Full=LexA repressor
 gi|467099|gb|AAA17282.1| lexA [Mycobacterium leprae]
 gi|13093029|emb|CAC31384.1| LexA, SOS repressor protein [Mycobacterium leprae]
 gi|219933063|emb|CAR71098.1| LexA, SOS repressor protein [Mycobacterium leprae Br4923]
          Length = 235

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 23/220 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
            + I   I          PS   +A   GL  TS   ++ +    +G   R P+      
Sbjct: 27  QRTILNVIRASVTSRGYPPSIREIADAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 86

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +             L    G     +   +P+L    +GS        F  G   +   +
Sbjct: 87  VRGVEETQAAGPAVLTEVAGSDVLPEPTFVPILGRIAAGSPI------FAEGTVEDIFPL 140

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P            +      K    SM       GD +++      + GD +      G+
Sbjct: 141 PRELVG-------EGTLFLLKVTGDSMVEAAICDGDWVVVRQQKVADNGDIVAAMID-GE 192

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K      G  + L+  N  +       +D   + +++
Sbjct: 193 ATVKTFKR-AGGQVWLIPHNPAFDPI--PGNDATVLGKVV 229


>gi|300949501|ref|ZP_07163497.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
 gi|300451077|gb|EFK14697.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
          Length = 231

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI   I ++    N+  + LA   G+D  + ++ +     G+ +  S +++ ++  A + 
Sbjct: 2   KIGSRIRQLRLAKNIKIAELAEAVGVDAANISRLE----TGKQKQFSEQTLNRLAQALSV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117
           ++  L     +D       EK    +                  G               
Sbjct: 58  SVPDLFTSDENDTTVHINSEKHASPVKDVDVY-RVEVLDVSASAGAGHIHGSDVIDVIHA 116

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +     ++         +       +  SM      GD++ ++  I    GD + +    
Sbjct: 117 IEFSNDQALAMFGGRTPSGVKVINVRGDSMASTIEPGDLIFVDVTINEFDGDGIYVFGFD 176

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           G +  K L     + + ++S N  Y    +            ++L  SQ
Sbjct: 177 GKVYVKRLQMIPDQ-LLVISDNPRYREWNITKENEHRFYIYGKVL-ISQ 223


>gi|261245569|emb|CBG23364.1| repressor protein cI [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
          Length = 241

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 24/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + +++  E   ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 13  MKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 66

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L        +         P      +             G         EI
Sbjct: 67  ALGVNSEWLSTGIGPMKKDGTTPINASP----SSNTFKIDILDLEVSAGPGVINREFVEI 122

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                                       +  SM      GD+L ++ +I+   GD +   
Sbjct: 123 LRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGIYAF 182

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCY---PVDTVE-MSDIEWIARIL 219
                   K L   +   + ++S N  Y        + M+ +    +++
Sbjct: 183 LYDDTAHVKRLQKMKD-KLLVISDNKSYSAWDPIERDEMNRVFVFGKVI 230


>gi|193070526|ref|ZP_03051466.1| repressor protein CI [Escherichia coli E110019]
 gi|192956220|gb|EDV86683.1| repressor protein CI [Escherichia coli E110019]
          Length = 215

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 28/226 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H+ I E I  + E   L+ + LA+  G    S    +    E   R  S +    
Sbjct: 1   MKTM-HEIIGERIKSLREAKGLSQAQLAKLCGWAAPS----RLGNYELGTRKVSADDALV 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + AA   +  +++         ++   ++     F    +G F + G +   +    V  
Sbjct: 56  LGAALGVSPAKIMFGED-----SDAVFRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPT 110

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174
               S          +    + +  SM       P + +G +++++ A  V  GD  +  
Sbjct: 111 TTKASE---------KAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVAS 161

Query: 175 PRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K      G S  L+ LN  Y     + S    I +++
Sbjct: 162 ANGDSEATFKKYEKDAGVSY-LVPLNPAYRTLDCDHS-CRIIGKVV 205


>gi|300919981|ref|ZP_07136440.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
 gi|300412928|gb|EFJ96238.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
          Length = 235

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 73/228 (32%), Gaps = 17/228 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E ++       ++ S LA   G+   +  K       G  +     +  K+      +  
Sbjct: 6   ERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTNGSRKMVELANALKVRPEWLSSGI 65

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRS 125
             +     +  +  ++     +++     +   F +          G+    +      S
Sbjct: 66  GEMRDGAHEEPSNVRESSLKAVVWEDIKRNDDEFVALPLLNVSLSAGSGSCELEESSEFS 125

Query: 126 PHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                + +      +      +    SM P    GD++ +N+        +     ++  
Sbjct: 126 LVFRKHYLKKMGVSERSAKLVRVVGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSDL 185

Query: 180 IVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222
           +  K LI     S+ + S+N   YP + ++  +    +  I R+ W+S
Sbjct: 186 LRVKTLI-ATPTSVIIRSINREEYPDEVMDRDEFHETVRIIGRVFWSS 232


>gi|302522304|ref|ZP_07274646.1| LexA repressor [Streptomyces sp. SPB78]
 gi|302431199|gb|EFL03015.1| LexA repressor [Streptomyces sp. SPB78]
          Length = 262

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 52/219 (23%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 61  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 110

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                        P   + P          +    +  +   +P
Sbjct: 111 --RDPHRPRAYEVRGSDQPSPQPADTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 168

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 169 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 220

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 221 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 256


>gi|194014993|ref|ZP_03053610.1| LexA repressor [Bacillus pumilus ATCC 7061]
 gi|194014019|gb|EDW23584.1| LexA repressor [Bacillus pumilus ATCC 7061]
          Length = 206

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 60/227 (26%), Gaps = 36/227 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S ++  I   I    +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQLDILTFIKEEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     ++L      I                       +   P          +    N
Sbjct: 61  TKPRAIEVLDEEEMNIP-------------------KSAVMNVPVIGKVTAGLPITAVEN 101

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +PE  +      A   Q    +    SM+       D +I+      N GD ++
Sbjct: 102 VEEYFPLPETFA------APDEQVFMLEIMGESMIDAGILDKDYVIVRQQSTANNGDIVV 155

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K           L   N       ++   +  + +++
Sbjct: 156 AMTEEDEATVKRFYK-EDTHFRLQPENPSMEPIILQN--VSILGKVI 199


>gi|183602410|ref|ZP_02963776.1| LexA repressor [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683275|ref|YP_002469658.1| LexA repressor [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191236|ref|YP_002968630.1| LexA repressor [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196642|ref|YP_002970197.1| LexA repressor [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218329|gb|EDT88974.1| LexA repressor [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620925|gb|ACL29082.1| LexA repressor [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249628|gb|ACS46568.1| LexA repressor [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251196|gb|ACS48135.1| LexA repressor [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177352|gb|ADC84598.1| LexA repressor [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794229|gb|ADG33764.1| LexA repressor [Bifidobacterium animalis subsp. lactis V9]
          Length = 231

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 23/218 (10%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFKIL 62
           ++ +AI ++ E     PS   + + A L  TS  + +   +E +    R P+     +++
Sbjct: 25  QVLDAIRKLLEEQGFAPSLREIGKAANLKSTSSVQHQLHALESKGFIRRDPNKGRAIELV 84

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              + T      +PF           ++PL+    +G             +  + + +P 
Sbjct: 85  ETQDGTSGGNPIVPFDGMDLEPSDFLDVPLVGAIAAGQPIT------AEQHVEDVMRLPV 138

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             +               + +  SM+      GD +++        GD +       +  
Sbjct: 139 RLTGT-------GNLFMLEVKGDSMIDAAICDGDFVVVREQHNAENGDIVAALLD-DEAT 190

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K    +      L+  N  Y     + +  + + +++
Sbjct: 191 VKTF-RQEHGHTWLIPHNPNYAPI--DGTHAQIMGKVV 225


>gi|75676032|ref|YP_318453.1| LexA repressor [Nitrobacter winogradskyi Nb-255]
 gi|123745685|sp|Q3SRJ0|LEXA_NITWN RecName: Full=LexA repressor
 gi|74420902|gb|ABA05101.1| SOS-response transcriptional repressor, LexA [Nitrobacter
           winogradskyi Nb-255]
          Length = 233

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 60/228 (26%), Gaps = 10/228 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++   I+   +   + PS   +     L   +  ++      +R  I      
Sbjct: 1   MLTRKQYELLRFINERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+         +    P        K  +                  G    G
Sbjct: 61  ARAIEVIKLPELAASGGGRRGFTPSVIEGNLGKVRRGGGGGADEAERPVAVPVMGRIAAG 120

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171
                +                 +    + +  SM+      GD+ ++      + GD +
Sbjct: 121 TPIEALQTCSHTISLPPDMLGAGEHYALEVRGDSMVDAGILDGDMALIQRNPTADTGDIV 180

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K    R   SI L   N  Y V  +  + ++   R++
Sbjct: 181 VALIDDEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVQIQGRLV 227


>gi|85703338|ref|ZP_01034442.1| LexA repressor [Roseovarius sp. 217]
 gi|85672266|gb|EAQ27123.1| LexA repressor [Roseovarius sp. 217]
          Length = 233

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 12/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIQKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I ++  +           P           +         + +      G    G
Sbjct: 61  ARALEIVRLPESLGGEAR-HSFTPRVIDGDRPNGPRPANSQPVEVAHAFEVPLMGRIAAG 119

Query: 113 NKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
                +   +   S  + +          + +  SM       GD++I+      + GD 
Sbjct: 120 VPIEAIAHVQHNVSVPSTMIRGAANHYALEVRGDSMIEAGINDGDVVIIRETSVADNGDI 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    R G +I L + N  Y         ++   R++
Sbjct: 180 VVALIEDQEATLKRFYRR-GNAIALEAANPAYETRLFPEDQVQVQGRLV 227


>gi|251792258|ref|YP_003006980.1| HTH-type transcriptional regulator PrtR [Aggregatibacter
           aphrophilus NJ8700]
 gi|157921532|gb|ABW02839.1| putative repressor CI [Aggregatibacter aphrophilus NJ8700]
 gi|247533647|gb|ACS96893.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 231

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 11/227 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-- 64
             + E +    +R       LA  AG    + +       +            KI     
Sbjct: 2   NTLAERLQFAMDRMGKNQVELAALAGTSQVTISNILNGVTKSPRNGLQIAKALKISPEWL 61

Query: 65  -TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WN 116
                      +  +   T      +              F       GN        +N
Sbjct: 62  LNGTGEMVQPKIESNVAETGSFDLWDRNTPLNDDEVEVPLFQEIRLAAGNGFADDIMDYN 121

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
              +   R+                    SM P+   G  + +++  +      +     
Sbjct: 122 NFKLRFSRATLRRQGVQYENAVCVVADGNSMEPVIPNGATVGIDTGNKTIRDGSIYAINH 181

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
            G +  K+L +     I + S N   Y  +   + D+  I ++ W S
Sbjct: 182 GGLLRIKLLYNMPNNQIKIRSYNTDEYDDEIASLDDVSVIGKVFWYS 228


>gi|296444565|ref|ZP_06886529.1| transcriptional repressor, LexA family [Methylosinus trichosporium
           OB3b]
 gi|296257833|gb|EFH04896.1| transcriptional repressor, LexA family [Methylosinus trichosporium
           OB3b]
          Length = 235

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 12/230 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +     +   I    +   + PS    K  LD  S +   R  +    R      P+ 
Sbjct: 1   MLTKKQSDLLRFIHERLKETGVPPSFDEMKDALDLRSKSGIHRLILALEERGFIRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-----GSGGFFDSGVFP 110
               ++L        +          +  +            +             G   
Sbjct: 61  ARALEVLRLPESATPRAAARGGKFSPSVIEGALGRVRPMAERAESEVDQQVAVPVMGRIA 120

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
            G   + +                 +    + +  SM+      GDI+++      + GD
Sbjct: 121 AGTPISALQNRSHTISLPPDLLGGGEHFALEVRGDSMIDAGILDGDIVVVKKQDSADTGD 180

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K L  R   SI L + N  Y         +    R++
Sbjct: 181 IVVALIDDEEATLKRLRKRGA-SIALEAANPAYETRIFGPDRVRIQGRLV 229


>gi|316985836|gb|EFV64778.1| peptidase S24-like family protein [Neisseria meningitidis H44/76]
 gi|325128010|gb|EGC50908.1| peptidase, S24 family [Neisseria meningitidis N1568]
 gi|325130061|gb|EGC52850.1| peptidase, S24 family [Neisseria meningitidis OX99.30304]
 gi|325133952|gb|EGC56607.1| peptidase, S24 family [Neisseria meningitidis M13399]
 gi|325136816|gb|EGC59414.1| peptidase, S24 family [Neisseria meningitidis M0579]
 gi|325138493|gb|EGC61059.1| peptidase, S24 family [Neisseria meningitidis ES14902]
 gi|325139936|gb|EGC62465.1| peptidase, S24 family [Neisseria meningitidis CU385]
 gi|325142187|gb|EGC64610.1| peptidase, S24 family [Neisseria meningitidis 961-5945]
 gi|325198111|gb|ADY93567.1| peptidase, S24 family [Neisseria meningitidis G2136]
 gi|325200404|gb|ADY95859.1| peptidase, S24 family [Neisseria meningitidis H44/76]
 gi|325206257|gb|ADZ01710.1| peptidase, S24 family [Neisseria meningitidis M04-240196]
 gi|325207946|gb|ADZ03398.1| peptidase, S24 family [Neisseria meningitidis NZ-05/33]
          Length = 236

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 22/231 (9%)

Query: 11  EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGR------------NRWPSTES 57
           + +  +A+    L P+ +A +  +   +    +  GI  +              W  T  
Sbjct: 6   DRLFEIAKEQGVLKPADIAERLNISQQALKNWESRGIAAKALPEVAKAFGVSETWLRTGE 65

Query: 58  IFK-----ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
             +     I       +  +              +  + + Y   S   G   +   P  
Sbjct: 66  GSRTAPVLIDPDLPHEVKDIHRPMTWSSNDPLPDDDYVFVPYLKESCFKGGVGTYEIPDY 125

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           N +    +P  +S                    SM     +   + +++        ++ 
Sbjct: 126 NGY---RLPFGKSTLKRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 182

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
              + G    K LI + G S+ + S N   Y  +   +  +  I R+ W S
Sbjct: 183 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYGDENAPLDSLTVIGRVFWWS 233


>gi|162147707|ref|YP_001602168.1| LexA repressor [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542331|ref|YP_002274560.1| LexA repressor [Gluconacetobacter diazotrophicus PAl 5]
 gi|189046538|sp|A9HJ64|LEXA_GLUDA RecName: Full=LexA repressor
 gi|161786284|emb|CAP55866.1| putative lexA repressor [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530008|gb|ACI49945.1| SOS-response transcriptional repressor, LexA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 253

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 63/248 (25%), Gaps = 30/248 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-------- 52
           M +    ++   IDR  ++   +PS    K  L+  S +   R       R         
Sbjct: 1   MLTRKQHELLLFIDRHLKQTGFSPSFDEMKDALNLRSKSGIHRLISALEERDFLRRRHHR 60

Query: 53  --------------------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
                               P  ES    + A         +    +    +   +    
Sbjct: 61  ARALEVLRLPETMPAATGKPPLAESGPPPVTAPATDESAAAESFVPNVIKGDFANRLAGA 120

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLY 151
                +G+      G    G     +     +           +    +    SM     
Sbjct: 121 SVATEAGAIHLPFYGRIAAGQPIEALRETGAQIEVPMNLLGHGEHYALEVAGDSMIEAGI 180

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             GD +I+        G  ++      ++  K L  R G +I L   N  Y    V    
Sbjct: 181 LDGDTVIIRRGDVAQNGQIVVALIDDQEVTLKRLRRR-GSTIALEPANARYEPRIVPSDR 239

Query: 212 IEWIARIL 219
           +    +++
Sbjct: 240 VRIQGQLV 247


>gi|239826731|ref|YP_002949355.1| LexA repressor [Geobacillus sp. WCH70]
 gi|259494476|sp|C5D9K3|LEXA_GEOSW RecName: Full=LexA repressor
 gi|239807024|gb|ACS24089.1| SOS-response transcriptional repressor, LexA [Geobacillus sp.
           WCH70]
          Length = 207

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S   ++I + I +  +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQQQILDFIKKEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                          +   +   P          +    N
Sbjct: 61  TKPRAIEILD------------------ADFSASNQTDDVISVPIIGKVTAGQPITAIEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             +   +P        + + +      +    SM       GD +I+      + GD ++
Sbjct: 103 IEDYFPLP------KRLVSSEDHVFMLEVMGDSMIEAGILDGDYVIVRQQQSADNGDIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +   I L   N       V   D   + +++
Sbjct: 157 AMTEDNEATVKRFFKEKD-HIRLQPENSNLEPIIVR--DCTILGKVI 200


>gi|209967957|ref|YP_002265383.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238]
 gi|208011481|emb|CAQ81944.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238]
          Length = 205

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 22/217 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  +     L+   LA K  +  ++ ++ +    + +N+         +   T   
Sbjct: 4   IGERIKSLRLNQGLSQESLAEKINVTKSTISQWEVGKAQPKNKNL-------LSIVTFFD 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                     +      +   +P      +   G  +     T      + V  I     
Sbjct: 57  TTYEYLKGGGEIDDRCPRVVSVPFYNVSVAAGLGIINDSETYTYVDIENLQVSNI----- 111

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                            SM P+ + G IL++++  +      + +  +   +  K LIS 
Sbjct: 112 ------EHLVSLTASGDSMEPVLKDGSILVVDTQSKNIIDGHMYVFRQDDLLRVK-LISY 164

Query: 189 RGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWAS 222
               + + S N  Y  +     E+ D+  I +++W S
Sbjct: 165 EKNHLIVTSYNKEYKDEMYKFSELDDLNIIGQVIWHS 201


>gi|125973291|ref|YP_001037201.1| SOS-response transcriptional repressor, LexA [Clostridium
           thermocellum ATCC 27405]
 gi|256003771|ref|ZP_05428759.1| SOS-response transcriptional repressor, LexA [Clostridium
           thermocellum DSM 2360]
 gi|281417495|ref|ZP_06248515.1| transcriptional repressor, LexA family [Clostridium thermocellum
           JW20]
 gi|166990798|sp|A3DDH9|LEXA_CLOTH RecName: Full=LexA repressor
 gi|125713516|gb|ABN52008.1| SOS-response transcriptional repressor, LexA [Clostridium
           thermocellum ATCC 27405]
 gi|255992332|gb|EEU02426.1| SOS-response transcriptional repressor, LexA [Clostridium
           thermocellum DSM 2360]
 gi|281408897|gb|EFB39155.1| transcriptional repressor, LexA family [Clostridium thermocellum
           JW20]
 gi|316940477|gb|ADU74511.1| transcriptional repressor, LexA family [Clostridium thermocellum
           DSM 1313]
          Length = 213

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 27/221 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59
             +KI + ++   E++   PS   +    G   TS   +  ++   +G   + PS     
Sbjct: 8   KQQKILDFLNEQIEKNGYPPSVREICNAVGFKSTSTVHSYLEKLRKQGLIQKDPSKPRAL 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K++     +                K       L   P          +    N  +T  
Sbjct: 68  KVINNKKNSKTD-----------EPKNIYSGKELVEVPIIGKVTAGQPILAVENIEDTFP 116

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         +   +     + Q  SM        D +++      N GD ++      
Sbjct: 117 LPLD-------FVQNSTVFMLRVQGDSMIEAGIFDNDYIVVKQQSTANNGDIVVALID-D 168

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K     +   I L   N  Y    V   ++  + +++
Sbjct: 169 EATVKTFYKEK-GFIRLQPANKFYDPIIV-RDNLSILGKVI 207


>gi|260856429|ref|YP_003230320.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
 gi|257755078|dbj|BAI26580.1| predicted phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
          Length = 235

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 72/228 (31%), Gaps = 17/228 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E ++       ++ S LA   G+   +  K       G  +     +  K+      +  
Sbjct: 6   ERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTNGSRKMVELANALKVRPEWLSSGI 65

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRS 125
             +     +  +  +      +++     +   F +          G+    +      S
Sbjct: 66  GEMRDGAHEEPSNVRDSSLKAVVWEDIKRNDDEFVALPLLNVSLSAGSGSCELEESSEFS 125

Query: 126 PHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                + +      +      +    SM P    GD++ +N+        +     ++  
Sbjct: 126 LVFRKHYLKKMGVSERSAKLVRVVGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSDL 185

Query: 180 IVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222
           +  K LI     S+ + S+N   YP + ++  +    +  I R+ W+S
Sbjct: 186 LRVKTLI-ATPTSVIIRSINREEYPDEVMDRDEFHETVRIIGRVFWSS 232


>gi|227878761|ref|ZP_03996672.1| SOS-response transcriptional repressor [Lactobacillus crispatus
           JV-V01]
 gi|256849961|ref|ZP_05555392.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US]
 gi|262046793|ref|ZP_06019753.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US]
 gi|227861654|gb|EEJ69262.1| SOS-response transcriptional repressor [Lactobacillus crispatus
           JV-V01]
 gi|256713450|gb|EEU28440.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US]
 gi|260572775|gb|EEX29335.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US]
          Length = 208

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 16/216 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I     +++LT + LA K  +   +    +R       R    E + K+    +  
Sbjct: 4   ISENIKFYRSKNSLTQAQLADKLNVSEQAVYNWERGTRI--PRMGYIEKMAKLFNIESPD 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I ++   P +    ++     + +              G    G         E  +   
Sbjct: 62  ILKVNKQPTNMKPLSQSGMHAVRIPII-----------GTIACGTPILAEQNIEGYTTEL 110

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187
                       + Q  SM P    G  +I+     V   +   ++     +   K +  
Sbjct: 111 FNEKPDGTLFVLRCQGDSMEPKIPDGATVIVREQPTVEDDEIAAVLVDDNTEATLKRI-K 169

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILWAS 222
             G+ + LM  N  Y    +   +    + +++  S
Sbjct: 170 HVGKQVMLMPENKKYDPILLNEENPGRILGKVIKVS 205


>gi|295402356|ref|ZP_06812311.1| transcriptional regulator, XRE family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975629|gb|EFG51252.1| transcriptional regulator, XRE family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 206

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 26/215 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I + I++  +   ++   L  + GL   +  + +    E R       +I   L    
Sbjct: 6   KIIGKNIEKYRKLKGISAEELGNRVGLTKKTIRRYE--TGEIRIINDRVLAIADALDIDP 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             + +  D+        +                      G    GN        E    
Sbjct: 64  ADLYEGTDIVEFTDEVDKLPIV------------------GTISCGNGVIAYEDIEGYEE 105

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               +    +    + +  SM+      GD+L++     V  GD   +    G+ V K +
Sbjct: 106 VPRSWLNGGEYFFLRAKGDSMINARIMDGDLLLIRRQDDVENGDIAAVLID-GEAVLKRV 164

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIAR 217
                 +I L S N  Y    +   D   I  I +
Sbjct: 165 YK-TDDTIILQSENPAYKPIILRKDDMKNIRIIGK 198


>gi|109289970|ref|YP_655502.1| CI repressor [Mannheimia phage phiMHaA1]
 gi|254360842|ref|ZP_04976989.1| bacteriophage repressor [Mannheimia haemolytica PHL213]
 gi|90110576|gb|ABD90586.1| CI repressor [Mannheimia phage phiMhaA1-PHL101]
 gi|90110627|gb|ABD90636.1| CI repressor [Mannheimia phage phiMhaA1-BAA410]
 gi|153092316|gb|EDN73385.1| bacteriophage repressor [Mannheimia haemolytica PHL213]
          Length = 228

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 7/218 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  + ++  LT    A + G+   S  K          R     ++  +     
Sbjct: 2   DTLASRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTRNPTRIYEIANVLDVDVNWL 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEI 123
           +T           G+     E+E  +L            +G F TG+       V     
Sbjct: 62  KTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNGSFVTGDLTAYTHAVEFENA 121

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                   A     +       SM P    GD+L +++      GD + +     ++  K
Sbjct: 122 YFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTTKSAYQGDGVYVFSYGENLYVK 181

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218
            L    G  + ++S N  Y    +        +   ++
Sbjct: 182 RLQF-AGDELLVISDNPLYKEWRITSENEHKFQIHGKV 218


>gi|70728592|ref|YP_258341.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342891|gb|AAY90497.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
           Pf-5]
          Length = 248

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 74/249 (29%), Gaps = 34/249 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S   + +   +  + +R  ++P+ L R+ G+  ++ ++       G+   PS + I +
Sbjct: 1   MRSMQIRNVSTVLRELLDRDGISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISR 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL------------YFPPSGSGGFFDSGV 108
           I      +  QL                EI                     S  F     
Sbjct: 57  IAEYFQVSTDQLRGRVDIAPARAAAPRGEIHSELKDISLWDDDTPVDDDEVSVPFLREVE 116

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSA 162
              G+    +   E  S   G  +++              +  SMLP+ R G  + +N+ 
Sbjct: 117 LAAGSGRFVIEESERASLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAG 176

Query: 163 IQVNCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDI 212
                GD +          G +  K L       I L S N             ++   I
Sbjct: 177 KCAI-GDIVDGDLYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYSFQEIQEEQI 234

Query: 213 EWIARILWA 221
             +  + W 
Sbjct: 235 SILGHVFWW 243


>gi|46358671|ref|YP_006379.1| CI [Enterobacteria phage ST104]
 gi|56414532|ref|YP_151607.1| transcriptional activator-regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363463|ref|YP_002143100.1| transcriptional activator-regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|46357907|dbj|BAD15186.1| CI [Enterobacteria phage ST104]
 gi|56128789|gb|AAV78295.1| transcriptional activator-regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094940|emb|CAR60477.1| transcriptional activator-regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|312911317|dbj|BAJ35291.1| transcriptional activator-regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
          Length = 229

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 24/229 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + + + +++  E   ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 1   MKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       L        +         P      +             G         EI
Sbjct: 55  ALGVNSEWLSTGIGPMKKDGTTPINASP----SSNTFKIDILDLEVSAGPGVINREFVEI 110

Query: 124 RSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                                       +  SM      GD+L ++ +I+   GD +   
Sbjct: 111 LRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGIYAF 170

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCY---PVDTVE-MSDIEWIARIL 219
                   K L   +   + ++S N  Y        + M+ +    +++
Sbjct: 171 LYDDTAHVKRLQKMKD-KLLVISDNKSYSAWDPIERDEMNRVFVFGKVI 218


>gi|289649967|ref|ZP_06481310.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|320321116|gb|EFW77260.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330988517|gb|EGH86620.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 221

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 16/219 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + +        L+   LA KAG+     ++ +     G +      SI K       
Sbjct: 3   NLADRLKIARAHAGLSQGELALKAGIKQPVISQLETGKNAGSS---FVVSIAKACGV--- 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV--PEIRS 125
              + L                       P     + +      G     + +       
Sbjct: 57  -NAEWLVNGQGGMLPETSGFDANVEPALAPVKFYEYPEISWVQAGAATEALVIGNVANCD 115

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180
            H             K +  SM       + +G ++++     +  G  ++     T + 
Sbjct: 116 VHPSDAWAGPNGFWLKVKGPSMTAPGGISFVEGMLILIAPGFDIQSGQYVVAKITDTNEA 175

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K      GRS  L  LN  +    ++  D + I R++
Sbjct: 176 TFKQFYKDSGRSY-LRPLNPVFSTIEID-EDWQIIGRVV 212


>gi|316933939|ref|YP_004108921.1| LexA family transcriptional repressor [Rhodopseudomonas palustris
           DX-1]
 gi|315601653|gb|ADU44188.1| transcriptional repressor, LexA family [Rhodopseudomonas palustris
           DX-1]
          Length = 236

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 62/231 (26%), Gaps = 13/231 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++ + I+   +   + PS   +     L   +  ++      +R  I      
Sbjct: 1   MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG---FFDSGVF 109
                + K+   +            S       K +    +     G  G       G  
Sbjct: 61  ARAIEVIKLPDTSGMPGNARRGFTPSVIEGNLGKVRPPSPVPSEDDGDRGSVAVPVMGRI 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168
             G     +                 +    + +  SM       GD+ ++      N G
Sbjct: 121 AAGTPIEALQTRSHTVSVPADMLGSGEHYALEVRGDSMVEAGILDGDMALIQKNDVANTG 180

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++      +   K    R   SI L   N  Y V  +  + +    +++
Sbjct: 181 DIVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 230


>gi|319897230|ref|YP_004135425.1| hypothetical protein HIBPF09641 [Haemophilus influenzae F3031]
 gi|317432734|emb|CBY81099.1| Conserved hypothetical protein [Haemophilus influenzae F3031]
          Length = 230

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 56/213 (26%), Gaps = 19/213 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +    +   LT   L +  G+   +  K +  G               + +     
Sbjct: 4   LANRLKIARKAAGLTQDQLGKLVGVSQNAIQKIEAGGETKYT--------LALASVLGVD 55

Query: 69  ICQLLDLPFSDGRTTEKKEKE-IPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRSP 126
              L          T     E +             +       G +       PEI S 
Sbjct: 56  PIWLQSGEGKTPEKTTALSTELVTTQRDNEHRHRIDYLDVYLAAGISGIENSDYPEIIST 115

Query: 127 HNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                    +                  SM P  RKGDI+ +++ I    GD +      
Sbjct: 116 LFLSDEGMARLVGKRSSQGVSIVNVPTDSMEPTIRKGDIVFIDTTINCYIGDGIYAFSIN 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           G++  K +         ++S N  YP + +   
Sbjct: 176 GELYIKRIQKLMSGGYRMISDNQAYPSEIISDE 208


>gi|295836144|ref|ZP_06823077.1| repressor LexA [Streptomyces sp. SPB74]
 gi|197695239|gb|EDY42172.1| repressor LexA [Streptomyces sp. SPB74]
          Length = 262

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 52/219 (23%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 61  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 110

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                        P   + P          +    +  +   +P
Sbjct: 111 --RDPHRPRAYEVRGSDQPSPQPADTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 168

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 169 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 220

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 221 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 256


>gi|99080976|ref|YP_613130.1| LexA repressor [Ruegeria sp. TM1040]
 gi|122984325|sp|Q1GHJ8|LEXA_SILST RecName: Full=LexA repressor
 gi|99037256|gb|ABF63868.1| SOS-response transcriptional repressor, LexA [Ruegeria sp. TM1040]
          Length = 241

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 65/236 (27%), Gaps = 18/236 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++ E I +  ++  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLQLLEFIHKRLQKDGVPPSFDEMKTALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKK-------------EKEIPLLYFPPSGSGGFFD 105
            + +                      +                   L     +G+     
Sbjct: 61  ARAIEVIRLPDSLGGGGALGAASDGFQPKVIAGGRGDSADGGAAAELKPVADTGATELTI 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
            G    G     +              +   Q    + +  SM+      GD++++    
Sbjct: 121 MGRIAAGVPIEAINQAAAHVAVPNAMLSSSGQHYALEVRGDSMIDAGINDGDVVVIRETD 180

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + GD ++      +   K    + GR I+L + N  YP  +     ++   R++
Sbjct: 181 AADNGDIVVALVEGHEATLKRFERK-GRMIELHAANPAYPTRSYTEDQVKVQGRLV 235


>gi|310779490|ref|YP_003967823.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
           2926]
 gi|309748813|gb|ADO83475.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
           2926]
          Length = 232

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 64/228 (28%), Gaps = 25/228 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF----------- 59
           + +    +    + +  A+  G+  + FN  +R  ++        + I            
Sbjct: 5   KFLKDRRKNLGYSQNKFAKSIGITQSYFNTIERGEVKNPPSEEVLDKISQGLQLNEKETE 64

Query: 60  --KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K LAA   T   ++       +     E     +    S                   
Sbjct: 65  TLKYLAALERTPDIIMKELSKLKKELTSAESLKANINLKESLPLIKGIPVYERISAGIGA 124

Query: 118 VGVPEIRSPHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +             +I       +         SM P  + G ++I    +++  G+   
Sbjct: 125 I----NDGEVTDYLSIPGIKNAQEVFAVNVWGDSMEPNIKDGSVIICRKDVEIRDGEIGA 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
                 +   K +     + + LMS N  YP   +   + +  + +++
Sbjct: 181 FLLN-DEAYVKRI-KVTNQYVALMSDNPNYPPIFIGPGENLIAVGKVI 226


>gi|291295793|ref|YP_003507191.1| putative phage repressor [Meiothermus ruber DSM 1279]
 gi|290470752|gb|ADD28171.1| putative phage repressor [Meiothermus ruber DSM 1279]
          Length = 210

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 73/213 (34%), Gaps = 17/213 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   + +  +   L+   +A  AG+  T      R     +    ST  + ++  A +
Sbjct: 4   DDVSLFVQKRIKELGLSVRKVASMAGISHTHLGNLIRGISSWKEVQFST--LERLAYALD 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +  L+ L      + + +E+  P+ +            G+   G   +  GVP +   
Sbjct: 62  IPVNDLVYLVRGKVPSLDHRERVTPVRFLIQPVR------GLASAGQPVDPEGVPVLAD- 114

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVL 185
                  +     ++ +  SM P    GD + ++ +  ++  G   + +        K +
Sbjct: 115 -----VWRRGSLLYRVEGDSMAPTLHDGDRVYVDPSETELREGRIYICEIPGDGHTIKRV 169

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                  + L+S N  Y       S++  + R+
Sbjct: 170 RRLDDGQLWLVSDNPAYRPW--RPSEMRIVGRV 200


>gi|198385590|gb|ACH86126.1| PrtR [Pseudomonas phage DVM-2008]
          Length = 267

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 77/248 (31%), Gaps = 33/248 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + +   +  + ++H ++P+ L R+ G+  ++ ++       G+   PS + I K
Sbjct: 15  MRVMQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISK 70

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSGVF 109
           I      +  QL            ++++    L                 S  F      
Sbjct: 71  IAEYFAVSTDQLRGRADVVPAGNARRDEPHSELKDISLWDDETPVEEDEVSVPFLREVEL 130

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAI 163
             G+    +   E  S   G  +++              +  SMLP+ R G  + +N+  
Sbjct: 131 AAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGK 190

Query: 164 QVNCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIE 213
               GD +          G +  K L       I L S N             ++   I 
Sbjct: 191 CGI-GDIVDGDLYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYTFQEMQDEQIV 248

Query: 214 WIARILWA 221
            +  + W 
Sbjct: 249 ILGHVFWW 256


>gi|149204799|ref|ZP_01881762.1| LexA repressor [Roseovarius sp. TM1035]
 gi|149141768|gb|EDM29821.1| LexA repressor [Roseovarius sp. TM1035]
          Length = 233

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 62/229 (27%), Gaps = 12/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIQKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I ++  +           P           +         + +      G    G
Sbjct: 61  ARALEIVRLPESLGGEAR-HSFSPRVIDGDLSDAPRPANAQPVEVAHAFEVPLMGRIAAG 119

Query: 113 NKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
                +   +   S  + +          + +  SM       GD++I+      + GD 
Sbjct: 120 VPIEAIAHAQHNVSVPSNMIRGAANHYALEVRGDSMIEAGINDGDVVIIRETSVADNGDI 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    R G +I L + N  Y         +    R++
Sbjct: 180 VVALIEDQEATLKRFYRR-GNAIALEAANPAYETRLFPEDQVRVQGRLV 227


>gi|39935968|ref|NP_948244.1| LexA repressor [Rhodopseudomonas palustris CGA009]
 gi|39649822|emb|CAE28344.1| SOS response transcriptional repressor, lexA [Rhodopseudomonas
           palustris CGA009]
          Length = 275

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 58/231 (25%), Gaps = 13/231 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----------EGR 49
           M +    ++ + I+   +   + PS    K  LD  S +   R                R
Sbjct: 40  MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 99

Query: 50  NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            R      +         +                +     P       GS      G  
Sbjct: 100 ARAIEVIKLPDTGGMPGNSRRGFTPSVIEGNLGKVRPPSPTPAEDDHDRGSVAVPVMGRI 159

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168
             G     +                 +    + +  SM       GD+ ++      + G
Sbjct: 160 AAGTPIEALQSRSHTISVPADMLGSGEHYALEVRGDSMVEAGILDGDMALIQKNDVADTG 219

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++      +   K    R   SI L   N  Y V  +  + +    +++
Sbjct: 220 DIVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 269


>gi|283786292|ref|YP_003366157.1| phage repressor protein [Citrobacter rodentium ICC168]
 gi|282949746|emb|CBG89365.1| putative phage repressor protein [Citrobacter rodentium ICC168]
          Length = 231

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 18/229 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +     +  S LA   G+D  + ++ +     G+ +  + +S+ K   A   
Sbjct: 2   NIGNRIRELRLARGMKISDLADAVGIDGANVSRVE----TGKQKSFTEQSLSKYANALGV 57

Query: 68  TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + +L               +     + +    +     S S G          +   ++
Sbjct: 58  DVAELFTPSINETTVYKSSENNPVYGEDDPVFRVEMLDVSASAGMGFIQGSDVIDVIRSI 117

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                R+                 +  SM      GD++ ++ +I    GD + +     
Sbjct: 118 EYNSERAVALFGGRTPDTVKVINVRGDSMADTIEPGDLIFVDVSINEFDGDGIYVFGFDE 177

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWA-SQ 223
            I  K L       I ++S N  Y   +V+           +++ + SQ
Sbjct: 178 KIYVKRLQMIPD-KILVISDNPKYREWSVDQSNEDRFYVFGKVMLSQSQ 225


>gi|330807816|ref|YP_004352278.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375924|gb|AEA67274.1| putative Transcription factor, Xre family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 247

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 77/248 (31%), Gaps = 33/248 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + +   +  + ++H ++P+ L R+ G+  ++ ++       G+   PS + I K
Sbjct: 1   MRVMQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISK 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSGVF 109
           I      +  QL            ++++    L                 S  F      
Sbjct: 57  IAEYFAVSTDQLRGRADVVPAGNARRDEPHSELKDISLWDDETPVEEDEVSVPFLREVEL 116

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAI 163
             G+    +   E  S   G  +++              +  SMLP+ R G  + +N+  
Sbjct: 117 AAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGK 176

Query: 164 QVNCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIE 213
               GD +          G +  K L       I L S N             ++   I 
Sbjct: 177 CGI-GDIVDGDLYAINHNGQLRVKQLYRLPTG-IRLRSFNRDEHPDEDYTFQEMQDEQIV 234

Query: 214 WIARILWA 221
            +  + W 
Sbjct: 235 ILGHVFWW 242


>gi|85374133|ref|YP_458195.1| LexA repressor [Erythrobacter litoralis HTCC2594]
 gi|123293744|sp|Q2NA93|LEXA_ERYLH RecName: Full=LexA repressor
 gi|84787216|gb|ABC63398.1| SOS-response transcriptional repressor [Erythrobacter litoralis
           HTCC2594]
          Length = 233

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 54/227 (23%), Gaps = 13/227 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--R 51
           M +    ++   I +  E   ++PS   +     L   S      +  +  G   R   R
Sbjct: 1   MLTAKQHELIRFIQQRLEETGISPSFEEMKEALDLKSKSGVHRLISALEERGFIRRLPNR 60

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             + E + +                 +      +  +   +              G    
Sbjct: 61  ARALEILKQPEDVVGGGAKAAQSGSEASNVVDIRTAQAKTVPAPINDVVEIPLH-GRIAA 119

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
           G     +   +   P              +    SM       GD  ++        G+ 
Sbjct: 120 GAPIEALEDHQSL-PVPAALLGPGDHYALEVSGDSMIEAGIFDGDFALIRRTDSARDGEI 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           ++      +   K L       + L   N  Y     +   ++   +
Sbjct: 179 VVALVNNEEATLKYLHRDS-GRVRLDPANASYEAQVYDPHQVQVQGK 224


>gi|168260980|ref|ZP_02682953.1| CI protein [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|307311055|ref|ZP_07590699.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|205349860|gb|EDZ36491.1| CI protein [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|306908561|gb|EFN39058.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|315061677|gb|ADT76004.1| putative CI repressor [Escherichia coli W]
 gi|323377741|gb|ADX50009.1| phage repressor like transcriptional regulator, XRE family
           [Escherichia coli KO11]
          Length = 217

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 15/214 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS + I  +            
Sbjct: 8   RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 62

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129
                                +P                F  G+    V   +  S    
Sbjct: 63  HDGTFSPAGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 122

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
              ++       T      P +  G +++++    V  GD  + +    +   K LI   
Sbjct: 123 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 179

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           G+   L  LN  YP+          + +++ ASQ
Sbjct: 180 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 210


>gi|163736564|ref|ZP_02143983.1| LexA repressor [Phaeobacter gallaeciensis BS107]
 gi|161390434|gb|EDQ14784.1| LexA repressor [Phaeobacter gallaeciensis BS107]
          Length = 224

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 19/228 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + + I+   ++  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLDFINTRLQQDGVPPSFDEMKVALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I ++  +   T       P    + +         L      + G     +    
Sbjct: 61  ARAIEIIRLPDSLGNTAEAAPAAPGPANQVSAPAMIAAMELPVMGRIAAGVPIEAINQVS 120

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171
           +    V VP          + Q Q    + +  SM       GDI+++      + GD +
Sbjct: 121 H---QVAVPASM------LSAQGQHFALEVRGDSMIEAGINDGDIVVIRETAVADNGDVV 171

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K +  + G +I L + N  Y         ++   R++
Sbjct: 172 VALVEGQEATLKRIYRK-GSTIALEAANPAYETRRYPQDQVKVQGRLV 218


>gi|212710117|ref|ZP_03318245.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM
           30120]
 gi|212687324|gb|EEB46852.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM
           30120]
          Length = 214

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 28/226 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIF 59
           M    ++ I E +  + E   L+ + LA+  G    S     +        R  S +   
Sbjct: 1   MKKI-NEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGE-----RKISADDAL 54

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            I  A   +  +L+    SD   +     E PLL    +G+    +S  +   +    + 
Sbjct: 55  VISEALGVSPAELMFGTQSDQVISN---YEYPLLTKIQAGAFTE-NSNSYTEKDAIAWIP 110

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLI 173
                           +    + +  SM       P + +G +++++    VN GD  + 
Sbjct: 111 T---------AKKASERAFWLEVEGHSMTAAQGGKPSFPEGMLILIDPKEPVNVGDFCIA 161

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +    +   K LI   G++  L  LN  + +  +   + E I +++
Sbjct: 162 RLNGNEFTFKKLIRESGQTF-LEPLNPKFDLIPIN-ENCEIIGKVI 205


>gi|115524578|ref|YP_781489.1| LexA repressor [Rhodopseudomonas palustris BisA53]
 gi|122296173|sp|Q07NH5|LEXA_RHOP5 RecName: Full=LexA repressor
 gi|115518525|gb|ABJ06509.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas
           palustris BisA53]
          Length = 237

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +    ++   I+   +   + PS    K  LD  S +   R       R      P+ 
Sbjct: 1   MLTRKQFELLRFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTE-------KKEKEIPLLYFPPSGSGGFFDSGV 108
               +++      I            +         +    I         +      G 
Sbjct: 61  ARAIEVIKLPEFGINGGGQTRRGFTPSVIEGHLGKVRPHASIGSDEDSHDRNVAVPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G     +                 +    + +  SM+      GD+ ++      + 
Sbjct: 121 IAAGTPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVDAGILDGDMALIQKNESADT 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K    R   SI L   N  Y V  +  + +    +++
Sbjct: 181 GDIVVALIDEEEATLKRFRRRGA-SIALEPANSAYEVRILPPNRVRIQGKLV 231


>gi|218690255|ref|YP_002398467.1| Repressor protein CI from phage [Escherichia coli ED1a]
 gi|218427819|emb|CAR08732.2| Repressor protein CI from phage [Escherichia coli ED1a]
          Length = 215

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 28/226 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H+ I E I  + E   L+ + LA+  G    S    +    E   R  S +    
Sbjct: 1   MKTM-HEIIGERIKSLREAKGLSQAQLAKLCGWAAPS----RLGNYELGTRKVSADDALV 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + AA   +  +++         ++   ++     F    +G F + G +   +    V  
Sbjct: 56  LGAALGVSPAKIMFGED-----SDAVFRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPT 110

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174
               S          +    + +  SM       P + +G +++++ A  V  GD  +  
Sbjct: 111 TTKASE---------KAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVAS 161

Query: 175 PRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K      G S  L+ LN  Y     + +    I +++
Sbjct: 162 ANGDSEATFKKYEKDAGVSY-LVPLNPAYRTLDCDHT-CRIIGKVV 205


>gi|169333724|ref|ZP_02860917.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259573|gb|EDS73539.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM
           17244]
          Length = 197

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 27/213 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + + H +T   LA    LD +S  K +  GI      PS +++ KI A  N +I
Sbjct: 3   GEKLRSLRKEHGMTQVDLANALDLDKSSIAKYESAGII-----PSVDTLQKISALFNVSI 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LL+ PF D          + ++    +G  G             N             
Sbjct: 58  DYLLNAPFGDINNVMN----VEIIGTVVAGRDGIATYEFLGISQAIN------------- 100

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
               + +    K +  SM P   +GD+ ++     ++ GD  ++     + V K +    
Sbjct: 101 -INNKDEYKYLKVRGDSMAPQILEGDLALVRLQPDIDSGDLAVVIIGGEEGVIKKVQK-T 158

Query: 190 GRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
             SI L+S N  Y        +M  ++   +++
Sbjct: 159 DNSISLISFNPMYDTRVFIGKDMEQLQIFGKVV 191


>gi|157692462|ref|YP_001486924.1| LexA repressor [Bacillus pumilus SAFR-032]
 gi|166990797|sp|A8FDP7|LEXA_BACP2 RecName: Full=LexA repressor
 gi|157681220|gb|ABV62364.1| transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 206

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 36/227 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S ++  I   I    +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQLDILTFIKEEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     ++L                     E+       +   P          +    N
Sbjct: 61  TKPRAIEVLD-------------------EEELNIPKSAVMNVPVIGKVTAGLPITAVEN 101

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +PE  +      A   Q    +    SM+       D +I+      N GD ++
Sbjct: 102 VEEYFPLPETFA------APDEQVFMLEIMGESMIDAGILDKDYVIVRQQSTANNGDIVV 155

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K           L   N       ++   +  + +++
Sbjct: 156 AMTEEDEATVKRFYK-EDTHFRLQPENPSMEPIILQN--VSILGKVI 199


>gi|86742192|ref|YP_482592.1| LexA repressor [Frankia sp. CcI3]
 gi|123737138|sp|Q2J779|LEXA_FRASC RecName: Full=LexA repressor
 gi|86569054|gb|ABD12863.1| SOS-response transcriptional repressor, LexA [Frankia sp. CcI3]
          Length = 256

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 12/222 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
            +++ E I    ER    PS   +    GL  TS   ++ K    +G   R P+     +
Sbjct: 33  QRRVLEVIRAAVERRGYPPSVREIGEAVGLTSTSSVAHQLKVLEEKGYLRRDPNRPRAME 92

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG--VFPTGNKWNTV 118
           +L   +      +    +    T     E        S S   +         G      
Sbjct: 93  VLTVEHPRQRADVGAGATTVAGTIPIVGEAAPGTTEGSKSDAAYVPVLGRIAAGGPILAE 152

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E   P       +      +    SM+      GD +++      + G+ +      
Sbjct: 153 QAVEDVFPLPREIVGEGTLFLLRVVGDSMINAAICDGDWVVVRQQPVADNGEIVAAMID- 211

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   K L   R   I L   N  +        D   + RI+
Sbjct: 212 GEATVKRL-RVRDGKIWLHPENSAFADI--PGEDATILGRIV 250


>gi|60099615|gb|AAX12919.1| transcriptional regulator [Escherichia blattae DSM 4481]
          Length = 246

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 75/229 (32%), Gaps = 23/229 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  + ++   + +  A  AG+ P+  N+       G    P   ++ K    + E + 
Sbjct: 19  SRLRALLKKFK-SNNAFAVAAGISPSGLNRLLEG---GYPTLPILIALAKAGGVSVEWLS 74

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-------GGFFDSGVFPTGNK-WNTVGVPE 122
              DL  S      + +     +      +            +     G   WN    P 
Sbjct: 75  TGGDLVESKLPALVQGDVVGATVTDVKGNNVDLEEFVFVPRYNVCASAGYGSWNDDETPM 134

Query: 123 IRSPHNGIY------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                   +      A   Q +       SM  +    DI+++N A +    + + +   
Sbjct: 135 FTVSFRRFWVTNHLKADPAQLSVISVYGDSMEGVLNDKDIILINHADK-EPREGIYVLRI 193

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI----EWIARILWA 221
            G ++ K +    G  + + S N  Y   ++ ++D+    + + +++W 
Sbjct: 194 DGQLIVKRVQRLPGSLLRITSTNPAYEPFSINLNDVPSDFDIVGKVVWY 242


>gi|313902000|ref|ZP_07835415.1| SOS-response transcriptional repressor, LexA [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467724|gb|EFR63223.1| SOS-response transcriptional repressor, LexA [Thermaerobacter
           subterraneus DSM 13965]
          Length = 201

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 63/229 (27%), Gaps = 45/229 (19%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51
           M   +   ++I + I          PS   +    GL  TS       + +R G     R
Sbjct: 1   MEELTRRQRQILDYIKASIRERGYPPSVREIGEAVGLKSTSTVHTYLARLERKGYI--RR 58

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            P+     ++L  +      +           +                       +   
Sbjct: 59  DPTKPRAIEVLEESGLRTRTVPVPLVGQVTAGQP----------------------ILAV 96

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
            N  + + +P    P       + +    + +  SM+      GD +I+      + GD 
Sbjct: 97  ENIEDVLPLPTELVP-------EGEVFALRIRGDSMIGAGILDGDYVIVRRQETADNGDI 149

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K     R   I L   N       V  +    + +++
Sbjct: 150 VVALID-DEATVKRFYRERDG-IRLQPENPAMEPIRVRTA--RILGKVV 194


>gi|218890289|ref|YP_002439153.1| putative c repressor [Pseudomonas aeruginosa LESB58]
 gi|218770512|emb|CAW26277.1| putative c repressor [Pseudomonas aeruginosa LESB58]
          Length = 237

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 22/208 (10%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           +  G +++ GL   +              +P+ + + +I  A   +   L          
Sbjct: 38  SLRGFSKECGLSEATLRSYLSGET-----FPTLDRLEQIAKAAGTSAMWL--------AF 84

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT------Q 136
                 E        S +           G+   T G   +       Y+++        
Sbjct: 85  GTPTSAEDSREKGDDSYAYIPLYDARVSAGHGSWTEGARILAQLAFTRYSLRKQGLEIAN 144

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
            +  +    SM PL   GD ++++ +      + + +      + AK +  +    + ++
Sbjct: 145 MSAVRIGGDSMEPLLSDGDTVMIDHSCNEVRDEAVYVIRLDDHLYAKRVQRQINGGLAII 204

Query: 197 SLNCCYPVDTV---EMSDIEWIARILWA 221
           S N  Y    V   ++  ++ I R++W+
Sbjct: 205 SANPAYQTMFVSKQDLEAVDIIGRVVWS 232


>gi|56963932|ref|YP_175663.1| LexA repressor [Bacillus clausii KSM-K16]
 gi|71658808|sp|Q5WG03|LEXA_BACSK RecName: Full=LexA repressor
 gi|56910175|dbj|BAD64702.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16]
          Length = 208

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 32/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M+  S   ++I   I    ++    PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MSKLSKRQEEILAYIKDEVKKKGYPPSVREIGEAVGLASSSTVHGHLARLEKKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+     + +        +    +       K      +                   N 
Sbjct: 61  TKPRAIEVLSLGFDNDTFVKKETASFIPVIGKVTAGVPIT---------------AVENV 105

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            + + +P+         A          Q  SM       GD +I+      + GD ++ 
Sbjct: 106 EDYLPLPDHL-------AAYDNTYALVIQGESMIEAGIYDGDQVIVRQQQTADNGDIIVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +   I L   N       +   +   + +++
Sbjct: 159 MTEDNEATVKRFFREKD-YIRLQPENSSMEPIIL--ENCTILGKVI 201


>gi|327254477|gb|EGE66099.1| helix-turn-helix family protein [Escherichia coli STEC_7v]
          Length = 237

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 73/228 (32%), Gaps = 17/228 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E ++       ++ S LA   G+   +  K       G  +     +  K+      +  
Sbjct: 8   ERLNAAMSLAGVSQSQLADMVGISQPAIQKMSSGKTNGSRKMVELANALKVRPEWLSSGI 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRS 125
             +     +  +  ++     +++     +   F +          G+    +      S
Sbjct: 68  GEMRDGAHEEPSNVRESSLKAVVWEDIKRNDDEFVALPLLNVSLSAGSGSCELEESSEFS 127

Query: 126 PHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                + +      +      +    SM P    GD++ +N+        +     ++  
Sbjct: 128 LVFRKHYLKKMGVSERSAKLVRVVGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSDL 187

Query: 180 IVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222
           +  K LI     S+ + S+N   YP + ++  +    +  I R+ W+S
Sbjct: 188 LRVKTLI-ATPTSVIIRSINREEYPDEVMDRDEFHETVRIIGRVFWSS 234


>gi|152965474|ref|YP_001361258.1| SOS-response transcriptional repressor, LexA [Kineococcus
           radiotolerans SRS30216]
 gi|151359991|gb|ABS02994.1| SOS-response transcriptional repressor, LexA [Kineococcus
           radiotolerans SRS30216]
          Length = 244

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 69/218 (31%), Gaps = 22/218 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +++  AI    E+    PS   + +  GL  P+S  ++ K     G  R        + 
Sbjct: 37  QRRVLAAIQECVEQRGYPPSMREIGQAVGLTSPSSVAHQVKTLEKLGYLR--KDPRRPRT 94

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L     +      L  ++  + E + +   +       +GG   +         +   +P
Sbjct: 95  LEVVAPSSAGPGLLDGTEAGSAENRPRPRYVPVVGRIAAGGPILAEQL----VEDVFALP 150

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E             +    +    SM       GD +++        GD ++     G+ 
Sbjct: 151 EQLVGT-------GEHFMLRVVGESMLEAAICDGDWVVVRQQPTAENGD-VVAAMIDGEA 202

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             KVL  +    + L+  N  +     +  +   + R+
Sbjct: 203 TVKVLQRK-DGHVKLLPRNPLFDPI--DGDEATILGRV 237


>gi|119026133|ref|YP_909978.1| LexA repressor [Bifidobacterium adolescentis ATCC 15703]
 gi|154488907|ref|ZP_02029756.1| hypothetical protein BIFADO_02216 [Bifidobacterium adolescentis
           L2-32]
 gi|171473029|sp|A1A2G3|LEXA_BIFAA RecName: Full=LexA repressor
 gi|118765717|dbj|BAF39896.1| LexA repressor [Bifidobacterium adolescentis ATCC 15703]
 gi|154083044|gb|EDN82089.1| hypothetical protein BIFADO_02216 [Bifidobacterium adolescentis
           L2-32]
          Length = 257

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +K+ +AI     +    PS   +   AGL  P+S  ++ +    +G  R  + +     
Sbjct: 44  QRKVLDAIKTHLAKQGFAPSFREIGEAAGLKSPSSVKHQLQVLDEKGFIRMNANKGRAIE 103

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +   N+              + +     I   +  P          +    +  + + +P
Sbjct: 104 VVNLNDEEPNGKVAQVIPFPSQDDACGSIMASHDVPLVGRIAAGVPITAEQHVDDVMRLP 163

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E  +               +    SM+      GD +++        GD +       + 
Sbjct: 164 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQNSAENGDIVAALLD-DEA 215

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + L+  N  Y     + +  E + +++
Sbjct: 216 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 251


>gi|332533845|ref|ZP_08409701.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036776|gb|EGI73239.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505]
          Length = 206

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 78/216 (36%), Gaps = 19/216 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN-E 67
           + E I +      LT + LA  AG+   S  K +    +   R  + +++   L  T   
Sbjct: 3   VGERIKKRRVELGLTQANLAELAGIIQQSLQKIESGSTK-NPR--NLKALADALDCTPEF 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               + +   S+       +  +PL+ +  +G+    +               P   S  
Sbjct: 60  LQFGIAESINSNVSPGPDIKSTVPLISWVQAGAWSEINEIR---ECDAERFMCPVNAS-- 114

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLI 186
                  ++    + Q  SM P + +GD++ ++   +   G  ++ +         K LI
Sbjct: 115 -------SKTFALRVQGVSMEPKFYEGDLIFVDPEAECIHGSYVVARLDDDNHATFKQLI 167

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221
              G    L + N  +P   + ++ +   + ++++A
Sbjct: 168 IESGHKF-LKAANPNWPEQLIPINGNCTLVGKVVFA 202


>gi|254474906|ref|ZP_05088292.1| LexA repressor [Ruegeria sp. R11]
 gi|214029149|gb|EEB69984.1| LexA repressor [Ruegeria sp. R11]
          Length = 226

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 3/221 (1%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +     + + I    ++  + PS    K  LD  S +   R       R        +
Sbjct: 1   MLTKKQLDLLDFIHTRLQKDGVPPSFDEMKVALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             A     +   L     D         +          +      G    G     +  
Sbjct: 61  ARAIEIIRLPDSLGGTVEDVAEAPTPANQGTAPAAATIAAMELPVMGRIAAGVPIEAINQ 120

Query: 121 PEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +        + Q Q    + +  SM       GDI+++      + GD ++      
Sbjct: 121 ISHQVAVPASMLSAQGQHFALEVRGDSMIEAGINDGDIVVIRETSVADDGDVVVALVEGQ 180

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K +  + G S+ L + N  Y         ++   R++
Sbjct: 181 EATLKRIYRK-GTSVALEAANPAYETRRYRQDQVKVQGRLV 220


>gi|260599222|ref|YP_003211793.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
 gi|260218399|emb|CBA33475.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
          Length = 245

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 17/231 (7%)

Query: 4   FSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
            SH+ +     E + +       T   LA+  G+  +S NK        R    +T ++ 
Sbjct: 13  RSHEDLTMNFSERLAKAMADAGYTQGALAKAVGMAQSSVNKLLNGANGSR----NTVALA 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-- 117
           +IL  + E +     L        +        +Y                  +++    
Sbjct: 69  RILGVSPEWLADGQGLMRPLTTERKSAAASGADVYRVEVFDVRASAGSGVMIRDEFIETI 128

Query: 118 --VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
             +      +                    SM   +   D + ++ ++    GD + I  
Sbjct: 129 KSIEYSSEEARSLFGSRPADHIKMIAVNGDSMSGTFEPRDQIFVDVSVDFFDGDGIYIFT 188

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSD--IEWIARILWASQ 223
               +  K L  +  + + ++S N  Y    + ++ +  +   A++L  SQ
Sbjct: 189 LDNYVYIKRLQLQH-KRLAVISDNKKYETWYITDIDESGLNIRAKVL-VSQ 237


>gi|294478947|gb|ADE87512.1| transcriptional regulator [Deep-sea thermophilic phage D6E]
          Length = 206

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 26/215 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           KK+ + I++  +   L+   L  + GL   +  + +    E R       +I + L    
Sbjct: 6   KKVGQNIEKYRKMKGLSAEELGNRVGLTKKTIRRYE--TGEIRIINDRVLAIAEALDVDP 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             + +  D+      T +                      G    GN        E    
Sbjct: 64  ADLYEGTDVVEFTDETEKLPIV------------------GAISCGNGTVAYETIEGYEE 105

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               +    +    + +  SM+      G +L++     V  GD   +     D V K +
Sbjct: 106 VPKSWIKGGKYFFLRAKGDSMINAHITDGSLLLIRRQDDVENGDIAAVLID-DDAVLKRV 164

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIAR 217
               G +I L S N  Y    +   D   +  I +
Sbjct: 165 YK-SGDTIILQSENPAYKPIILHKDDMKNVRIIGK 198


>gi|320182370|gb|EFW57268.1| putative transcriptional regulator [Shigella boydii ATCC 9905]
 gi|323170913|gb|EFZ56563.1| peptidase S24-like family protein [Escherichia coli LT-68]
          Length = 224

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 71/222 (31%), Gaps = 17/222 (7%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
                ++ S LA   G+   +  K       G  +     +  K+      +    +   
Sbjct: 1   MRSAGVSQSQLADMVGISQPAIQKMSSGKTNGSRKMVELANALKVRPEWLSSGIGEMRDG 60

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRSPHNGIY 131
             +  +  ++     +++     +   F +          G+    +      S     Y
Sbjct: 61  THEEPSNIRESSLKAVVWEDIKKNDDEFVALPLLNVSLSAGSGSCEIEESSEFSLVFRKY 120

Query: 132 AI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            +      ++     +    SM P    GD++ +N+        +     ++  +  K L
Sbjct: 121 YLKKMGVTESSAKLVRVTGQSMEPTLHDGDVVGVNTQDTTIRDGKTYAICQSDLLRVKTL 180

Query: 186 ISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222
           I     S+ + S+N   YP + ++  +    +  I R+ W+S
Sbjct: 181 I-ATPTSVIIRSINREEYPDEVMDRDEFHKTVRIIGRVFWSS 221


>gi|312111541|ref|YP_003989857.1| LexA family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311216642|gb|ADP75246.1| transcriptional repressor, LexA family [Geobacillus sp. Y4.1MC1]
          Length = 207

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S   ++I + I +  +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQQQILDFIKKEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                          E   +   P          +    N
Sbjct: 61  TKPRAIEILD------------------ADFSARNETDDVISVPIIGKVTAGQPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             +   +P        + + +      +    SM       GD +I+      + GD ++
Sbjct: 103 IEDYFPLP------KRLISSEDHVFMLEVMGDSMIEAGILDGDYVIVRQQQSADNGDIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +   I L   N       V   D   + +++
Sbjct: 157 AMTEENEATVKRFFKEKD-HIRLQPENSNLEPIIVR--DCTILGKVI 200


>gi|310780644|ref|YP_003968975.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
           2926]
 gi|309749967|gb|ADO84627.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
           2926]
          Length = 224

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 62/220 (28%), Gaps = 13/220 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           KKI E I +  E  NL+   L+ K  L+ +  ++ +     G  +  + E + KI    +
Sbjct: 4   KKIGEFIRKRRESLNLSQGQLSYKCDLETSVIHRIE----VGERKKINYEHLKKIATGLD 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPP------SGSGGFFDSGVFPTGNKWNTVGV 120
               +L  L                            S +                 +  
Sbjct: 60  MNYIELYKLAGIIEEDALSDYYLPDFNDKINQQIELISDTKVDTIPIYESVSAGCGYIPD 119

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                  +   + +           SM P      ++++    ++   D  +     G+ 
Sbjct: 120 SVPLEYISLHLSGKENCIGIIVDGHSMEPTITDKAVIVMKKDTELKSKDIGVFLLN-GEA 178

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
             K    +    I L S N  Y    V+   D     +++
Sbjct: 179 YVKRFFKK-NNIIILYSDNSEYSPIIVDEYDDFIICGKVI 217


>gi|302542054|ref|ZP_07294396.1| repressor LexA [Streptomyces hygroscopicus ATCC 53653]
 gi|302459672|gb|EFL22765.1| repressor LexA [Streptomyces himastatinicus ATCC 53653]
          Length = 267

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 52/219 (23%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 66  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 115

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                        P   + P          +    +  +   +P
Sbjct: 116 --RDPHRPRAYEVRGSDQPSAQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 173

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 174 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 225

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 226 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 261


>gi|56419863|ref|YP_147181.1| LexA repressor [Geobacillus kaustophilus HTA426]
 gi|261419534|ref|YP_003253216.1| LexA repressor [Geobacillus sp. Y412MC61]
 gi|297530496|ref|YP_003671771.1| transcriptional repressor, LexA family [Geobacillus sp. C56-T3]
 gi|319766350|ref|YP_004131851.1| transcriptional repressor, LexA family [Geobacillus sp. Y412MC52]
 gi|61213225|sp|Q5L0C3|LEXA_GEOKA RecName: Full=LexA repressor
 gi|56379705|dbj|BAD75613.1| transcriptional repressor of SOS regulon [Geobacillus kaustophilus
           HTA426]
 gi|261375991|gb|ACX78734.1| transcriptional repressor, LexA family [Geobacillus sp. Y412MC61]
 gi|297253748|gb|ADI27194.1| transcriptional repressor, LexA family [Geobacillus sp. C56-T3]
 gi|317111216|gb|ADU93708.1| transcriptional repressor, LexA family [Geobacillus sp. Y412MC52]
          Length = 207

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 67/227 (29%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S   ++I E I +  +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQQQILEFIKQEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                       KE+E   +   P          +    N
Sbjct: 61  TKPRAIEILDND------------------MAKEREKEEIISVPIIGKVTAGQPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +P+  +      A + Q    +    SM       GD +I+      N GD ++
Sbjct: 103 IEGYFPLPKRLA------AGEEQLFMLEVMGDSMIEAGILDGDYVIVRQQSSANNGDIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +   I L   N       V   D   + +++
Sbjct: 157 AMTEDNEATVKRFFKEKD-HIRLQPENAHLEPIIVR--DCTILGKVI 200


>gi|222085871|ref|YP_002544402.1| LexA repressor [Agrobacterium radiobacter K84]
 gi|254809083|sp|B9JEY4|LEXA_AGRRK RecName: Full=LexA repressor
 gi|221723319|gb|ACM26475.1| LexA repressor [Agrobacterium radiobacter K84]
          Length = 240

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 16/234 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGR------TTEKKEKEIPLLYFPPSGSGGFFDS 106
                + K+  A + ++        S            +            + +      
Sbjct: 61  ARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVQPPAPAKPANDENNSAVSVPVM 120

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
           G    G   + +                 +    + +  SM+      GD +I+ ++   
Sbjct: 121 GRIAAGVPISAIQNNTHDITVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNSTTA 180

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           N GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 NPGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 233


>gi|138894847|ref|YP_001125300.1| LexA repressor [Geobacillus thermodenitrificans NG80-2]
 gi|166224569|sp|A4IMK1|LEXA_GEOTN RecName: Full=LexA repressor
 gi|134266360|gb|ABO66555.1| Transcriptional regulator [Geobacillus thermodenitrificans NG80-2]
          Length = 207

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S   ++I E I +  +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQQQILEFIKQEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                   +   KE+E   +   P          +    N
Sbjct: 61  TKPRAIEILD------------------SDLTKEREKEEVISVPMIGKVTAGQPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             +   +P+  +      A + Q    +    SM       GD +I+      N GD ++
Sbjct: 103 IEDYFPLPKRLA------AGEKQLFMLEVMGDSMIEAGILDGDYVIVRQQSSANNGDIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +   I L   N       V   D   + +++
Sbjct: 157 AMTEENEATVKRFFKEKD-HIRLQPENVHLEPIIVR--DCTILGKVI 200


>gi|268610362|ref|ZP_06144089.1| SOS-response transcriptional repressor [Ruminococcus flavefaciens
           FD-1]
          Length = 217

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 15/216 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            E +  +     +T   LA   G    ++  K +    +         +I K L  T   
Sbjct: 4   GERVLALRTEKGMTQDELALAVGYKSRSTIAKIESGERD--PHQSMIAAIAKALDTTPAY 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPEIRSP 126
           +    +   S  +     +              G            N    +        
Sbjct: 62  LMGWEESEQSPDKDKNLSKIPYTEEGTVLVPLIGKVAAGYSCHAEDNISEYIRTDGSSLK 121

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
               Y         + +  SM P   + D++++    +++     ++     D + K + 
Sbjct: 122 TGYDY------FWLEVKGDSMEPELHEKDLVLVQEQSELDAECYAVVTVDNEDGLVKQVQ 175

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
                 I L S+N  YP    E  D   I+ + R++
Sbjct: 176 -IDNTKITLKSINPYYPPRVFEKQDMNRIKIVGRVI 210


>gi|66395676|ref|YP_240035.1| ORF020 [Staphylococcus phage 47]
 gi|209363558|ref|YP_002267976.1| probable transcriptional repressor [Staphylococcus phage
           phi2958PVL]
 gi|257428267|ref|ZP_05604665.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282905891|ref|ZP_06313746.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282919258|ref|ZP_06326993.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
           C427]
 gi|284024543|ref|ZP_06378941.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 132]
 gi|62636100|gb|AAX91211.1| ORF020 [Staphylococcus phage 47]
 gi|208973059|dbj|BAG74375.1| probable transcriptional repressor [Staphylococcus phage
           phi2958PVL]
 gi|257275108|gb|EEV06595.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282317068|gb|EFB47442.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
           C427]
 gi|282331183|gb|EFB60697.1| transcriptional repressor [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 204

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 73/214 (34%), Gaps = 21/214 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I    +  NLT   +    G+  ++  K +   IE   R    + I K+  A   +   +
Sbjct: 5   IKSRRKELNLTLEQVGDLVGVGKSTVRKWETGDIENMKR----DKIVKLAKALRVSPSYI 60

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           + +     +      K+IP++    +G         +   N  + +              
Sbjct: 61  MGIEDEKPQLETIPVKKIPVVSKISAGMPI------YTEENLIDYIYF------ATKNLN 108

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
              ++   +    SM  L++ GD++++     V  G   ++     +   K +       
Sbjct: 109 SNKEEFGLQVSGDSMDKLFQDGDVVVVEKDSTVENGQLGVVLVNGYNGTVKRIRY-NNDQ 167

Query: 193 IDLMSL--NCCYPVDTVEMSD-IEWIARILWASQ 223
           I L+    N  +        D ++ + R++ ASQ
Sbjct: 168 IILIPESNNPSHYPQVYGKDDEVKIVGRVV-ASQ 200


>gi|145593998|ref|YP_001158295.1| LexA repressor [Salinispora tropica CNB-440]
 gi|145303335|gb|ABP53917.1| SOS-response transcriptional repressor, LexA [Salinispora tropica
           CNB-440]
          Length = 261

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            ++I E I    E+H   PS   +    G + P+S   + K    +G  R          
Sbjct: 60  QRRILEFIRTWVEQHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLR---------- 109

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                     +   P  D    E    + P   + P          +       +   +P
Sbjct: 110 --RDPNRPRAVDVRPPGDALDDEAALAQRPAPAYVPMLGRIAAGGPILAEQAIEDIFPLP 167

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       + +    + +  SML      GD +++        GD +      G+ 
Sbjct: 168 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPTAESGDIVAAMLD-GEA 219

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    R    + LM  N  +        D   + R++
Sbjct: 220 TVKTYRRR-DGHVWLMPQNPAFDPI--AGDDATIMGRVV 255


>gi|317129106|ref|YP_004095388.1| transcriptional repressor, LexA family [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474054|gb|ADU30657.1| transcriptional repressor, LexA family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 208

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 33/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           MT  S   + I + I    +     PS   +    GL   ++ +    R   +G  R   
Sbjct: 2   MTKLSKRQQDILDYIKEEVKEKGYPPSVREIGEAVGLASSSTVHGHLSRLEKKGLIRR-- 59

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                     T     +++ L     R +E     +P++    +G        +    N 
Sbjct: 60  --------DPTKPRAIEVIGLNDEARRVSESPSVYVPVIGKVTAG------DPITAIENV 105

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            + + +P         +         +    SM       GD +++      N GD ++ 
Sbjct: 106 EDYLPLPAS-------FVHDENSFILEISGDSMIEAGIFDGDYVVVRQQQNANNGDIVVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       +    +  + +++
Sbjct: 159 MTEEDEATVKRFFKEKD-YFRLQPENATLEPIILRS--VTILGKVI 201


>gi|144900044|emb|CAM76908.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1]
          Length = 222

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 9/215 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +   + +  +T   +A  AG++ +      R    GR+  PS E +  I  A N    
Sbjct: 7   DRLRARSRQLGMTAGRVAELAGVNRSFVYDIMR----GRSENPSLEKLDLISEALNVERN 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSP-HN 128
            LL         +   E  + +     S        G     ++          RS   +
Sbjct: 63  WLLHGIGGVDGESPIMEDPMGVFVSISSVQVSASMGGGNLVSDEVENGEPYHFQRSWILH 122

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            + A          +  SM+P    GD+++++ + ++     + +      +VAK L   
Sbjct: 123 DLKADPNNLRIMHVEGDSMMPTLHSGDVVLVDLSKRLPTPPGIFVLFDGMGLVAKRLEHI 182

Query: 189 RGR---SIDLMSLNCCYPVDTVEMSDIEWIARILW 220
                  + ++S N  Y        ++  I RI W
Sbjct: 183 PNHDPPKVRVISDNTFYTPYERTADEVNIIGRIRW 217


>gi|212715543|ref|ZP_03323671.1| hypothetical protein BIFCAT_00441 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660910|gb|EEB21485.1| hypothetical protein BIFCAT_00441 [Bifidobacterium catenulatum DSM
           16992]
          Length = 237

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +K+  AI +        PS   +   AGL  P+S  ++ +    +G  R  + +     
Sbjct: 24  QRKVLGAIKKHLAEQGFAPSFREIGEAAGLKSPSSVKHQLQVLDEKGFIRMNANKGRAIE 83

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           + + ++T             +       I      P          +    +  + + +P
Sbjct: 84  VVSFDDTSSSSKATQVIPFPSQSDSSGSIMASRDVPLVGRIAAGVPITAEQHVDDVMRLP 143

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E  +               +    SM+      GD +++        GD +       + 
Sbjct: 144 ERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQNTAENGDIVAALLD-DEA 195

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + L+  N  Y     + +  E + +++
Sbjct: 196 TVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 231


>gi|16764259|ref|NP_459874.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|169257171|ref|YP_001700549.1| putative transcriptional regulator (repressor) [Salmonella phage
           Fels-1]
 gi|16419406|gb|AAL19833.1| predicted Fels-1 prophage transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
          Length = 231

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 16/218 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I  + +   +T + LA     D  + ++ +R          S +SI KI  A   
Sbjct: 4   KVGQKIRELRKARKMTITQLAALTDWDVGNISRLERGMQGY-----SAQSIQKIAEALQV 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L     +D  T  K                          GN  ++    E+ S  
Sbjct: 59  PVSELFS-TETDSDTVNKYSVLSLSHQRRNDVYRVDVMDVSASAGNGNSSRDFIEVISSI 117

Query: 128 NGIYAIQTQDTRHK---------TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             +         H+          +  SM      GD++ ++  +    GD + +   +G
Sbjct: 118 EYVTEEAKTLFGHRPANQVKLINVRGDSMQGTIEPGDLIFVDIGVNYFDGDGIYVFDFSG 177

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           D+  K L   + + + L S N  Y    +   ++E + 
Sbjct: 178 DLYVKRLQKIKSQLLVL-SDNPLYKEWQITKEEMEMLH 214


>gi|192291621|ref|YP_001992226.1| LexA repressor [Rhodopseudomonas palustris TIE-1]
 gi|47605802|sp|P61614|LEXA_RHOPA RecName: Full=LexA repressor
 gi|229621744|sp|B3Q6P2|LEXA_RHOPT RecName: Full=LexA repressor
 gi|192285370|gb|ACF01751.1| transcriptional repressor, LexA family [Rhodopseudomonas palustris
           TIE-1]
          Length = 236

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 58/231 (25%), Gaps = 13/231 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----------EGR 49
           M +    ++ + I+   +   + PS    K  LD  S +   R                R
Sbjct: 1   MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 50  NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            R      +         +                +     P       GS      G  
Sbjct: 61  ARAIEVIKLPDTGGMPGNSRRGFTPSVIEGNLGKVRPPSPTPAEDDHDRGSVAVPVMGRI 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168
             G     +                 +    + +  SM       GD+ ++      + G
Sbjct: 121 AAGTPIEALQSRSHTISVPADMLGSGEHYALEVRGDSMVEAGILDGDMALIQKNDVADTG 180

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++      +   K    R   SI L   N  Y V  +  + +    +++
Sbjct: 181 DIVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 230


>gi|330810754|ref|YP_004355216.1| phage regulatory protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378862|gb|AEA70212.1| Putative phage regulatory protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 232

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 23/231 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M++       E I    +   LT   LA K G++    ++ +          P      K
Sbjct: 13  MSTL-----AERIKEARKHAVLTQKALALKVGVEQPVISQLETGKNLQSAHLP------K 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG- 119
           I          L D       +  ++           S             G     V  
Sbjct: 62  IAHVCGVNAIWLSDNIGPMIDSHREESNVSTAPQLKQSFRYPVI--SWVAAGAWSEAVEP 119

Query: 120 VPEIRSPHNGI--YAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL- 172
            P   S       Y  +      + +  SM         +G ++++++ ++   G  ++ 
Sbjct: 120 YPAGFSDRYEFSEYDSKGPAFWLEVKGDSMTSPVGTSIAQGSLILVDTEVEAAPGKLVVA 179

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             P + +   K L+S  G  + L  LN  Y ++     D   +  ++ A+Q
Sbjct: 180 KLPDSNEATFKKLVSD-GGKLFLKPLNPAYRIEEFT-EDCRIVGVVVQATQ 228


>gi|315268697|gb|ADT95550.1| transcriptional regulator, XRE family [Shewanella baltica OS678]
          Length = 235

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 33/223 (14%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +   +T S LA K G+   +          G  R PS E I  ++         L
Sbjct: 23  VKTRMKEAGVTQSMLAEKMGMSQGAIAHWL-----GGKRKPSIEDIASMMNIVGIRHMTL 77

Query: 73  LDLPFSDGRTT-----------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                 D   +                  P++ +  +G+         P           
Sbjct: 78  GADGLIDYPDSVLGNTEELPAKISYVNSFPVISYVQAGAWTEAVESC-PASALDEWQDTT 136

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPR 176
           E  S               + Q  SM       + +G ++++++      G  ++     
Sbjct: 137 ERTSE---------NCFWLRVQGDSMTTPAGISFPEGTLILIDAEKDYQNGSFVVAKLTD 187

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K L+   G+   L  LN  YP   +  +  + I  ++
Sbjct: 188 INEATFKKLVIDAGQKF-LRPLNTAYPTLPINGN-CKIIGVVV 228


>gi|296116167|ref|ZP_06834785.1| LexA repressor [Gluconacetobacter hansenii ATCC 23769]
 gi|295977273|gb|EFG84033.1| LexA repressor [Gluconacetobacter hansenii ATCC 23769]
          Length = 235

 Score = 99.1 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 67/229 (29%), Gaps = 12/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++   IDR  ++   +PS   +    GL   +  ++      +R  +  ++  
Sbjct: 1   MLTRKQHELLLYIDRHLKQTGFSPSFDEMKDALGLRSKSGIHRLISALEERGFVRRKHHR 60

Query: 53  PSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                + +I  + A      + +D+        +       +     + +      G   
Sbjct: 61  ARALEVVQIPQIEAVEPASARGVDMFSPTVIKGDFTPALPAVQVADTANAVQVPFLGRIA 120

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
            G+    +                      +    SM       GD +I+    Q   G+
Sbjct: 121 AGHAIEAISDASRLIDVPAGLIGVGTYYALEVCGDSMIEAGILDGDTVIVRQDRQAENGE 180

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            ++      ++  K L  + G +I L   N  Y    +    +     I
Sbjct: 181 IVVALIEGQEVTLKRLRRK-GSTIALEPANARYETRIMPADKVAIQGSI 228


>gi|158313084|ref|YP_001505592.1| LexA repressor [Frankia sp. EAN1pec]
 gi|229621220|sp|A8L6K4|LEXA_FRASN RecName: Full=LexA repressor
 gi|158108489|gb|ABW10686.1| SOS-response transcriptional repressor, LexA [Frankia sp. EAN1pec]
          Length = 250

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 63/222 (28%), Gaps = 19/222 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
            KK+ E I    ER    PS   +    GL  TS   ++ K    +G   R P+     +
Sbjct: 34  QKKVLEVIRSAVERRGYPPSVREIGEAVGLTSTSSVAHQLKVLQEKGFLRRDPNRPRAME 93

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK--EIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +L               +       +    E     + P          +       +  
Sbjct: 94  VLPIGGAKTGGRSRAGAAAAAGAPAETTALEAGTPTYVPLVGRIAAGGPILAEQAIEDVY 153

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P+           +      K    SM+      GD +++      + G+ +      
Sbjct: 154 PLPKEIVG-------EGTLFLLKVVGQSMINAAICDGDFVVVRQQPVADNGEIVAAMID- 205

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   K    +R   + L   N  +        D   + RI+
Sbjct: 206 GEATVKRF-RQRDGRVWLAPENPAFSDI--PAEDATILGRIV 244


>gi|312870855|ref|ZP_07730960.1| peptidase S24-like protein [Lactobacillus iners LEAF 3008A-a]
 gi|312872164|ref|ZP_07732237.1| peptidase S24-like protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311092248|gb|EFQ50619.1| peptidase S24-like protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311093545|gb|EFQ51884.1| peptidase S24-like protein [Lactobacillus iners LEAF 3008A-a]
          Length = 222

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 72/229 (31%), Gaps = 20/229 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++++I + ++R+     ++   ++RK  +  +S ++        R R    + + +  
Sbjct: 1   MRNNEEIMQLLERLKADKKMSLREISRKTDIAVSSISRYFN-----RTRDFPLDKLDRFA 55

Query: 63  AATNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDS-------GVFPT 111
            A N +   +L++      TT      ++++  +  +         +        G    
Sbjct: 56  KAFNVSPEYILNVSKPCDITTIYNQLHEKRKAKVYNYAKEQLDEQLNEKRSIYVVGTSAA 115

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
           G               +        D     +  SM P      I+  +    +  G+  
Sbjct: 116 GEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIG 172

Query: 172 LIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 173 IFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 221


>gi|323177107|gb|EFZ62697.1| repressor protein CI [Escherichia coli 1180]
          Length = 217

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 15/214 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS + I  +            
Sbjct: 8   RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 62

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129
                                +P                F  G+    V   +  S    
Sbjct: 63  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 122

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
              ++       T      P +  G +++++    V  GD  + +    +   K LI   
Sbjct: 123 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 179

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           G+   L  LN  YP+          + +++ ASQ
Sbjct: 180 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 210


>gi|331669090|ref|ZP_08369938.1| repressor protein CI [Escherichia coli TA271]
 gi|331064284|gb|EGI36195.1| repressor protein CI [Escherichia coli TA271]
          Length = 244

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 15/214 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS + I  +            
Sbjct: 35  RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 89

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129
                                +P                F  G+    V   +  S    
Sbjct: 90  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 149

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
              ++       T      P +  G +++++    V  GD  + +    +   K LI   
Sbjct: 150 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 206

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           G+   L  LN  YP+          + +++ ASQ
Sbjct: 207 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 237


>gi|281599669|gb|ADA72653.1| CI protein [Shigella flexneri 2002017]
          Length = 231

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 15/214 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS + I  +            
Sbjct: 22  RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 76

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129
                                +P                F  G+    V   +  S    
Sbjct: 77  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 136

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
              ++       T      P +  G +++++    V  GD  + +    +   K LI   
Sbjct: 137 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 193

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           G+   L  LN  YP+          + +++ ASQ
Sbjct: 194 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 224


>gi|297191630|ref|ZP_06909028.1| LexA repressor [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719371|gb|EDY63279.1| LexA repressor [Streptomyces pristinaespiralis ATCC 25486]
          Length = 261

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 53/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 60  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 109

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               +        P   + P          +    +  +   +P
Sbjct: 110 --RDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 167

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 168 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 219

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 220 TVKRFKR-ENGHVWLLPHNAAYQPI--PGDEATILGKVV 255


>gi|238063472|ref|ZP_04608181.1| lexA family transcriptional repressor [Micromonospora sp. ATCC
           39149]
 gi|237885283|gb|EEP74111.1| lexA family transcriptional repressor [Micromonospora sp. ATCC
           39149]
          Length = 260

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            ++I E I    ERH   PS   +    G + P+S   + K    +G  R          
Sbjct: 59  QRRILEFIRTWVERHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLR---------- 108

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                     +     ++    E    + P   + P          +       +   +P
Sbjct: 109 --RDPNRPRAVDVRSPNETLDDEASRSQRPAPAYVPMLGRIAAGGPILAEQAVEDVFPLP 166

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       + +    + +  SML      GD +++      + GD +      G+ 
Sbjct: 167 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPTADAGDIVAAMLD-GEA 218

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    R    + LM  N  +        D   + R++
Sbjct: 219 TVKTYRRR-DGHVWLMPQNPAFDPI--PGDDATIMGRVV 254


>gi|317051151|ref|YP_004112267.1| peptidase S24/S26A/S26B [Desulfurispirillum indicum S5]
 gi|316946235|gb|ADU65711.1| Peptidase S24/S26A/S26B, conserved region [Desulfurispirillum
           indicum S5]
          Length = 218

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 19/228 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M SFS  K+WE I R+       T + LA    +   S + +K+ G      W  T  I 
Sbjct: 1   MDSFS--KVWERIQRV---TGWKTQAELASALDIRQASVSGAKQRGSMP-LEWIYT--IA 52

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +    + + +    D+         ++   +P      + S    D+      +      
Sbjct: 53  RKYNTSMDWLLNGEDVSPGFSGENSQQHISLPKYSVVHAQSPEKCDASKLQASH------ 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +   +     +   +      +    SM P    GDIL+++   Q    D + I    G+
Sbjct: 107 LTFCQDWLQTMGLDKEALILVEVCGDSMEPTIYAGDILLVDQRFQKVGNDGIYILRLHGE 166

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARILW-ASQ 223
           +V K +      S+ +MS N  Y   T+       +  +  ++W ASQ
Sbjct: 167 LVVKRVQRLIDGSLRIMSDNKAYMDQTISAELSEQVCVVGFVVWRASQ 214


>gi|149915248|ref|ZP_01903776.1| putative transcriptional regulator, repressor [Roseobacter sp.
           AzwK-3b]
 gi|149810969|gb|EDM70808.1| putative transcriptional regulator, repressor [Roseobacter sp.
           AzwK-3b]
          Length = 220

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 8/208 (3%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            ER N++ + +ARKAG+   +    KR    G+ +  S E   KI  A    +  +L   
Sbjct: 14  LERQNVSVAEIARKAGVPYDAVRDIKR----GKVQSTSWERAVKIAQALGIVLEDVLPAT 69

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
               +  E    ++  +           D  V        ++  P          A    
Sbjct: 70  SKTEQVREAASSDLQAMVSVYDVHASAGDGAVVIHEEPIGSLAFPANYLR-QLTQANWRD 128

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISRR-GRSID 194
                 +  SMLP     D+++L+ + +    D L +    G+  + K +        + 
Sbjct: 129 LAIISVKGDSMLPTLADDDVVMLDRSKRDLSYDGLFVIRDNGEALLVKRIQRAPTPGHVI 188

Query: 195 LMSLNCC-YPVDTVEMSDIEWIARILWA 221
           ++S N   Y     ++SD+E I R++WA
Sbjct: 189 IISDNRALYDPVEKKLSDMEVIGRVIWA 216


>gi|160875227|ref|YP_001554543.1| putative phage repressor [Shewanella baltica OS195]
 gi|160860749|gb|ABX49283.1| putative phage repressor [Shewanella baltica OS195]
 gi|315267420|gb|ADT94273.1| putative phage repressor [Shewanella baltica OS678]
          Length = 247

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 63/213 (29%), Gaps = 21/213 (9%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           +    A K G+   +     + G       P  ++  +I      +I  L          
Sbjct: 35  SIREFAIKIGVSEGTLRNLIKGG------EPKLDTAIRIAEEAGVSIRWLATGNGPKYPN 88

Query: 83  TEKKEKEIPLLYFPPSGSG------GFFDSGVFPTGNKWNTVG------VPEIRSPHNGI 130
            ++ +     + +                  V  TG+            +P  ++     
Sbjct: 89  RQRDDISQEGIVYVHQDQFNEEYFLIEGYDVVVSTGHGAFNDETGVRRRLPFRKNWLKYR 148

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                       +  SM P    GD L+++ +        + +     D+ AK L     
Sbjct: 149 SLKPENLKVVYAKGNSMEPAIHSGDSLLVDISKTTLEDGCIFVLRLGDDLYAKRLQKLFD 208

Query: 191 RSIDLMSLNCCYPVDTVEMSD---IEWIARILW 220
             I+++S N  Y    V   +   ++ I +++W
Sbjct: 209 GGIEILSDNKEYKSQIVSAGELPMLQIIGKVVW 241


>gi|308235568|ref|ZP_07666305.1| LexA repressor [Gardnerella vaginalis ATCC 14018]
 gi|311114343|ref|YP_003985564.1| repressor lexA [Gardnerella vaginalis ATCC 14019]
 gi|310945837|gb|ADP38541.1| repressor lexA [Gardnerella vaginalis ATCC 14019]
          Length = 239

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 13/219 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +KI +AI    E H   PS   +    GL  P+S  ++ +   ++G  R     S  K 
Sbjct: 23  QRKIMDAIQNCLEEHGFPPSFREIGEAVGLRSPSSVKHQLRALEMKGLIRI----SANKG 78

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
            A          +   +    T+               S      G    G         
Sbjct: 79  RAIEVIGDFLKKNKEKAHTLITKSAVDVSIYNNDSLIHSHDVPLVGRIAAGTPITAEQHV 138

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E                  +    SM+      GD +++    +   GD +       + 
Sbjct: 139 EDVMRLPERLTGSGNLFMLEVHGDSMIDAAICDGDYVVVREQNEATNGDIVAALLD-NEA 197

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + LM  N  Y     + S  + + +++
Sbjct: 198 TVKTF-RKDNGHVWLMPHNPAYSPI--DGSHAKIMGKVV 233


>gi|163746569|ref|ZP_02153927.1| LexA repressor [Oceanibulbus indolifex HEL-45]
 gi|161380454|gb|EDQ04865.1| LexA repressor [Oceanibulbus indolifex HEL-45]
          Length = 231

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 14/229 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     +   I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLAFIHQRVQRDGVPPSFDEMKLALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+  +          +   D   +       P+       +      G    G
Sbjct: 61  ARAIEVVKLPESLGGAPGFAPRVIDGDRPDSPPPHSAQPV---TAQHAFDVPVMGRIAAG 117

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
                +          G   A Q +    + +  SM       GDI+++      + GD 
Sbjct: 118 VPIEAISQVSHTVTVPGGMIAGQGEHYALEVRGDSMIEAGINDGDIVVIRETSVADNGDI 177

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    +   S+ L + N  Y    +    ++   R++
Sbjct: 178 VVALVEDQEATLKRFRRQGA-SVALEAANAAYETRVLPSDKVKVQGRLV 225


>gi|307307842|ref|ZP_07587570.1| putative phage repressor [Shewanella baltica BA175]
 gi|306910061|gb|EFN40499.1| putative phage repressor [Shewanella baltica BA175]
          Length = 217

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 12/218 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            K+   I    +   L    +A+   +   + +  +R         PS E + K+     
Sbjct: 5   DKLSNRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTN-----PSGELLLKLANVLK 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                LL          +   +++  L +  S +      G       ++   VP+    
Sbjct: 60  VNEGWLLYGDTFKNDKIKDCGEKVTFLRYYQSVNASAGH-GCLNENETYSEYPVPKSVVD 118

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                  + +    + +  SM P+ + G IL +N          L +     ++  K+L 
Sbjct: 119 KQF---DKDKLFCIECRGDSMEPVLKSGSILAVNPCQTRIDDGGLYVVKLGSELRVKIL- 174

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARILWAS 222
           S     I L S N  Y  +TV+  D+      ++ W S
Sbjct: 175 SLSNEGITLKSFNKQYLDETVKQGDVRFSVEGKVFWFS 212


>gi|160873045|ref|YP_001557051.1| putative phage repressor [Shewanella baltica OS195]
 gi|160858567|gb|ABX51791.1| putative phage repressor [Shewanella baltica OS195]
          Length = 214

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 12/218 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            K+   I    +   L    +A+   +   + +  +R         PS E + K+     
Sbjct: 2   DKLSNRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTN-----PSGELLLKLANVLK 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                LL          +   +++  L +  S +      G       ++   VP+    
Sbjct: 57  VNEGWLLYGDTFKNDKIKDCGEKVTFLRYYQSVNASAGH-GCLNENETYSEYPVPKSVVD 115

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                  + +    + +  SM P+ + G IL +N          L +     ++  K+L 
Sbjct: 116 KQF---DKDKLFCIECRGDSMEPVLKSGSILAVNPCQTRIDDGGLYVVKLGSELRVKIL- 171

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARILWAS 222
           S     I L S N  Y  +TV+  D+      ++ W S
Sbjct: 172 SLSNEGITLKSFNKQYLDETVKQGDVRFSVEGKVFWFS 209


>gi|91211688|ref|YP_541674.1| repressor protein [Escherichia coli UTI89]
 gi|117624572|ref|YP_853485.1| putative phage repressor protein [Escherichia coli APEC O1]
 gi|218559304|ref|YP_002392217.1| Repressor protein CII [Escherichia coli S88]
 gi|218695990|ref|YP_002403657.1| Repressor protein CII [Escherichia coli 55989]
 gi|91073262|gb|ABE08143.1| repressor protein [Escherichia coli UTI89]
 gi|115513696|gb|ABJ01771.1| putative phage repressor protein [Escherichia coli APEC O1]
 gi|148566149|gb|ABQ88424.1| prophage repressor [Enterobacteria phage CUS-3]
 gi|218352722|emb|CAU98505.1| Repressor protein CII [Escherichia coli 55989]
 gi|218366073|emb|CAR03818.1| Repressor protein CII [Escherichia coli S88]
 gi|294490247|gb|ADE89003.1| repressor protein C2 [Escherichia coli IHE3034]
 gi|307626074|gb|ADN70378.1| Repressor protein CII [Escherichia coli UM146]
 gi|312945519|gb|ADR26346.1| Repressor protein CII [Escherichia coli O83:H1 str. NRG 857C]
 gi|323948802|gb|EGB44701.1| peptidase S24 [Escherichia coli H252]
 gi|324117735|gb|EGC11634.1| peptidase S24 [Escherichia coli E1167]
          Length = 216

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 26/219 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    +   +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 7   GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALANALKCSP 61

Query: 70  CQLLDLPF----SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             L+            +        PL+ +  +G                N        S
Sbjct: 62  DYLMKGEESLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHK-RAIDNWYDTTVDCS 120

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180
                            +  SM         +G I++++  ++   G  ++       + 
Sbjct: 121 E---------DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEA 171

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 172 TFKKLVIDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208


>gi|126726370|ref|ZP_01742211.1| LexA repressor [Rhodobacterales bacterium HTCC2150]
 gi|126704233|gb|EBA03325.1| LexA repressor [Rhodobacterales bacterium HTCC2150]
          Length = 232

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 66/227 (29%), Gaps = 9/227 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-----ST 55
           M +     +   I++  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLNFINQRMQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 56  ESIFKILAATNETICQ-LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
               +I+                      ++ E     L   P  +      G    G+ 
Sbjct: 61  ARAIEIVKLPGAIDEDAPKGGFKPRVIEGDRPETPPAALDVEPINARDISILGRIAAGDP 120

Query: 115 WNTVGV-PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
              +   P+  +    +          + +  SM+      GDI+++      + GD ++
Sbjct: 121 IEALDHGPQNVAVPGHMMEKGGNHYALEVKGDSMIDAGINNGDIVVIREQNTADNGDIVV 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                     K L+ +    I L + N  Y    +  + +    R++
Sbjct: 181 ALIEGETATLKRLMRK-NGMIALEAANPAYETRFLPDNQVAVQGRLV 226


>gi|238790799|ref|ZP_04634557.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC
           33641]
 gi|238721114|gb|EEQ12796.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC
           33641]
          Length = 234

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 76/236 (32%), Gaps = 31/236 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  + +I   I R+  + +LT   LA+  G+   S  K +    +     P  E++ +
Sbjct: 15  MKTEMNDRI--RIRRL--QLDLTQVQLAKAIGVSRVSVTKWESGITK-----PDGENLHR 65

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +    + T   LL       +  + K K        +    S   G +            
Sbjct: 66  LAQVLSCTPEWLLYGTGDLRQVDDTKIKPLTAVPNAIPVISSVQAGTWTDTYSAA----- 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNS---AIQVNCG 168
              + ++         +         +  SM      P   +G  +I+     +I+   G
Sbjct: 121 --RISDVLRWCTTTVKVSENAFALDVRGESMTNPNGSPSIPEGSTVIVEPNYGSIEDLYG 178

Query: 169 DRLLIKPR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             ++     + +   K L+        LM LN  +    +  +    + R++  +Q
Sbjct: 179 KIVVAIIDGSSEATIKKLVVDGPNKY-LMPLNPNFRPIEINGN-CRILGRVVQVTQ 232


>gi|239928525|ref|ZP_04685478.1| LexA repressor [Streptomyces ghanaensis ATCC 14672]
 gi|291436850|ref|ZP_06576240.1| LexA repressor [Streptomyces ghanaensis ATCC 14672]
 gi|291339745|gb|EFE66701.1| LexA repressor [Streptomyces ghanaensis ATCC 14672]
          Length = 259

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 57  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 107 -RDPHRPRAYEVRGSDQAAPVQPADTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 218 TVKRFKR-ENGHVWLLPHNAAYEPI--PGDDATILGKVV 253


>gi|288958447|ref|YP_003448788.1| repressor [Azospirillum sp. B510]
 gi|288910755|dbj|BAI72244.1| repressor [Azospirillum sp. B510]
          Length = 240

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 58/235 (24%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKS-----KRFGIEGRNRW 52
           M +    ++   I     +  ++PS   +    GL   S  ++      +R  I      
Sbjct: 1   MLTRKQHELLLFIHERLGQGGVSPSFDEMKDALGLKSKSGIHRLITGLEERGFIRRLPHR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----- 107
                + ++    +    +    P                   PP+ +    +       
Sbjct: 61  ARALEVLRLPEGLDAARSRAAVKPKFQPNVIRGDFAFASRDAAPPAPAPASANETVQLPL 120

Query: 108 --VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
                 G     +                      +    SM        D +I+     
Sbjct: 121 YGRIAAGTPIEALRDNSAFVDIPASMLSTGDHYALEVSGDSMVEAGILDHDTIIIQRCDS 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G  ++     G++  K L  + G ++ L   N  Y         +    +++
Sbjct: 181 AENGTIVVALVDEGEVTLKRLRRK-GNTVALEPANAAYETRIFGADRVRVQGKLV 234


>gi|194099008|ref|YP_002002081.1| putative CI protein [Neisseria gonorrhoeae NCCP11945]
 gi|304386577|ref|ZP_07368865.1| S24 family peptidase [Neisseria meningitidis ATCC 13091]
 gi|193934298|gb|ACF30122.1| putative CI protein [Neisseria gonorrhoeae NCCP11945]
 gi|304339406|gb|EFM05478.1| S24 family peptidase [Neisseria meningitidis ATCC 13091]
          Length = 232

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 66/230 (28%), Gaps = 23/230 (10%)

Query: 11  EAIDRM-AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  + A+R N   +  +R     P   N+          R        +I  A     
Sbjct: 5   DRIKNLIADRFNGNQAEFSRAINKAPAQINQWLNGY-----RNIGDGVAAQIETALGLPR 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPL----------LYFPPSGSGGFFDSGVFPTGNKW-NTV 118
             +      +      K     +                    F+       GN + + +
Sbjct: 60  GWVDGKDEPNIPIDSIKSNATVIGTVDAWDSKTPLSDDDCEVPFYKDVCLSAGNGFSDEI 119

Query: 119 G------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
                  +   +S                    SM P++  G  L +N+A ++    ++ 
Sbjct: 120 EDYNGYKLRFSKSTLRRHGISPDDVVCVSADGDSMEPVFPDGATLGINTADKMIKDGKIY 179

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
               +G +  K+L       + + S N  Y  +T  +  +  I R+ W S
Sbjct: 180 AINHSGLLRTKILQKLPDNQVRIKSYNPEYKDETASLDSLTVIGRVFWWS 229


>gi|92118814|ref|YP_578543.1| putative phage repressor [Nitrobacter hamburgensis X14]
 gi|91801708|gb|ABE64083.1| putative phage repressor [Nitrobacter hamburgensis X14]
          Length = 240

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 70/237 (29%), Gaps = 22/237 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTESIF 59
           M     K I   I+   E     P+  +R AGL P +    +R    E + +  S +++ 
Sbjct: 1   MDDL--KTIVARIEARLEEMGTNPAAASRAAGLSPGAIRNLQRGAKGEIKLKGASGKTLS 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG--------VFPT 111
            +       +  L+      G+    +           + +                   
Sbjct: 59  ALAEYLQVPLDWLMSGSGEPGKPQVIRPAGPERSTVVDAPNAPRLSEFGDFDVEVRGISV 118

Query: 112 GNKWNTVGVPE---IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
           G   +                                SM+P Y  G+ + +  A  V  G
Sbjct: 119 GGGDDEFYFNGDVIDHLRRPPGILRAKNVFALNVAGDSMMPRYEPGEPIYVQRANPVI-G 177

Query: 169 DRLLIKPRT------GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++++         G    K L+ R GR +    LN        +  +++ I R+L
Sbjct: 178 DYVVVELYPEIEGQAGKSFLKKLVRRTGRRVTCSQLNP-PKELEFDTGEVKEIYRVL 233


>gi|327393407|dbj|BAK10829.1| putative transcriptional regulator from phage origin [Pantoea
           ananatis AJ13355]
          Length = 230

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 17/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  + +   +    LA   G+D  + ++ +     G+ +  + +SI KI  A   
Sbjct: 2   NIGNKIRSLRKARGMKIEELAEAVGVDGANISRLE----TGKQKSFTEQSINKIAKALKV 57

Query: 68  T--------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      +      S     ++      +     S S G          +  +++ 
Sbjct: 58  DVSELFATGTAEPTVYNDSRNVQEQEPNAMYRVEVLDVSASAGPGTYVSGDVIDVIHSIE 117

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                +         +       +  SM      GD++ ++ +I    GD + +      
Sbjct: 118 YVSEHAKTIFGGRPASSIKMINVRGDSMAGTIEPGDLVFVDVSIHSVDGDGIYVFGFDEK 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           I  K L S   + + L S N  Y    ++           +++  SQ
Sbjct: 178 IHIKRLQSVPDKLLVL-SDNPQYKEWHIDRDNEHRFYVFGKVM-ISQ 222


>gi|288934642|ref|YP_003438701.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889351|gb|ADC57669.1| transcriptional regulator, XRE family [Klebsiella variicola At-22]
          Length = 220

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 19/214 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
             + +R  ++   LA   GL   + +           R PS + I KI+A       ++ 
Sbjct: 10  KDLMKRRGISQETLAEHLGLTKGAVSHWLNA-----RREPSLQDIAKIMAYLGLQGFEVN 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130
                  +            + P   +G +        G+    V       I    +  
Sbjct: 65  KDGSIRDK----SPASNISYHGPNVTTGTYPVLSWVSAGDWMEAVEPYHRRSIERWLDTN 120

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
                       +  SM         +G +++++  ++   G  ++       +   K L
Sbjct: 121 VECSDSSFWLDVKGDSMTSPVGLSIPEGMVILVDPEVEPRNGKLVVAKLDNENEATFKKL 180

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   G    L  LN  YP+  +  +  + I  ++
Sbjct: 181 VIDAGSKF-LKPLNPQYPMIPINGN-CQIIGVVV 212


>gi|196248582|ref|ZP_03147283.1| transcriptional repressor, LexA family [Geobacillus sp. G11MC16]
 gi|196212307|gb|EDY07065.1| transcriptional repressor, LexA family [Geobacillus sp. G11MC16]
          Length = 207

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S   ++I E I +  +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQQQILEFIKQEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                   +   KE+E   +   P          +    N
Sbjct: 61  TKPRAIEILD------------------SDLTKEREKEEVISVPMIGKVTAGQPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             +   +P+  +      A + Q    +    SM       GD +I+      N GD ++
Sbjct: 103 IEDYFPLPKRLA------AGEEQLFMLEVMGDSMIEAGILDGDYVIVRQQSSANNGDIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +   I L   N       V   D   + +++
Sbjct: 157 AMTEENEATVKRFFKEKD-HIRLQPENVHLEPIIVR--DCTILGKVI 200


>gi|148358304|ref|YP_001249511.1| phage repressor [Legionella pneumophila str. Corby]
 gi|296105654|ref|YP_003617354.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280077|gb|ABQ54165.1| phage repressor [Legionella pneumophila str. Corby]
 gi|295647555|gb|ADG23402.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 219

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 12/217 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+I + I    +   LT   L    G L  T     ++       R P  E I  +  A 
Sbjct: 5   KEIGKRIFEARKEKGLTLKELGELTGGLKQTRLTNWEQGT-----RAPGPEEIKLLAQAL 59

Query: 66  NETI-CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           + +    +        + T+     IPLL    +     F   +   G+  + V +    
Sbjct: 60  DVSPAFLMCLSDDQQVKRTKSYSHLIPLLDHHQACDAKSFIEAISDQGSAGDVVWISVSA 119

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAK 183
           +    I  + ++    K  D SM+P  R  D+L++  ++    GD  ++      + +  
Sbjct: 120 T---LIQELSSEAFALKMPDESMMPELRLNDVLVVEPSVTPCPGDFVVVKLANKLEAIVC 176

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
                     +L++LN  +P         IE I +I+
Sbjct: 177 QYRETTYTEFELVTLNDNWPNIKNTKEFRIEIIGKII 213


>gi|329889326|ref|ZP_08267669.1| lexA repressor [Brevundimonas diminuta ATCC 11568]
 gi|328844627|gb|EGF94191.1| lexA repressor [Brevundimonas diminuta ATCC 11568]
          Length = 234

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 63/228 (27%), Gaps = 10/228 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I        ++PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQHELLMFIHERIRETGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------TG 112
            + L             P       +    +   L   P+ +    D    P       G
Sbjct: 61  ARALEVVKLPEQATTAAPAKGRAPFKPDVIQGGGLNPRPAVAEAANDVRDLPLLGKIAAG 120

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171
                +     R P         +    + +  SM       GD +I+      + G+ +
Sbjct: 121 TPIAAIQHERERLPVPEAMLGAGEHYLLEIEGDSMIEAGILDGDTVIIKRVENASSGEIV 180

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K L  ++G+SI L   N  Y         +E   +++
Sbjct: 181 VALVEGEEATLKRL-RKKGQSIALEPANSAYETRIFGPDQVEVQGKLV 227


>gi|317050991|ref|YP_004112107.1| CI repressor [Desulfurispirillum indicum S5]
 gi|316946075|gb|ADU65551.1| CI repressor [Desulfurispirillum indicum S5]
          Length = 224

 Score = 98.7 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 10  WEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           W  I ++     L+  + LA   G++P S + +K+ G      +   E + KI      +
Sbjct: 8   WSRIQQL---TGLSTQAELADALGINPASVSGAKKRG------FFPLEWMLKIALDYQVS 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+ +            +           S    +       +  +   +  + SPH+
Sbjct: 59  MDALIGISEHGQMVGVSAFQAKTAAILSGKPSREENELLYEYEHSPIDDRTLETVVSPHS 118

Query: 129 GIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +Q            +    SM P  RKGD+++++ +      + + +     +++ 
Sbjct: 119 KDQLLQAIGFSTETMAIVRAHCDSMEPTIRKGDLMVVDRSCTAIETNGIYVFQAKQNLII 178

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILW 220
           K +       +   S N  YP + V    +   +    ++W
Sbjct: 179 KRVELLLNGFLRFFSDNPAYPSERVHPEQLSAEDIFGLVVW 219


>gi|331648293|ref|ZP_08349382.1| transciptional regulator [Escherichia coli M605]
 gi|331042842|gb|EGI14983.1| transciptional regulator [Escherichia coli M605]
          Length = 230

 Score = 98.7 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 24/232 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I       +LT   LA++ GL   + ++ +          P+ +++  +  A N +
Sbjct: 2   INDRIREARRNVHLTQDALAKRIGLTKATISQWESGNTT-----PNGKNLINLAEALNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-------TVGVP 121
              LL    SD +      +         S +    D    P   +          V + 
Sbjct: 57  PEWLLSGKTSDTKEIHSNAQVEGGFSVWDSSTPLEDDEVEIPFYQEIELSAGNGTYVDID 116

Query: 122 EIRSPHNGIYAIQTQ-------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
            +        +   +                SM P+   G ++ ++++       ++   
Sbjct: 117 RMGCKLRFARSTLRKAGVDVNCAACVSIHGNSMEPVLPDGAVVGIDTSKTGVKDGQMYAI 176

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV---EMSDIEWIARILWAS 222
            + G +  K+L       + + S N   Y  +     E + I  I ++ W S
Sbjct: 177 DQDGLLRVKLLYRLPSG-LRIRSFNRDEYADEEYFNQEANKIRIIGQVFWYS 227


>gi|258654104|ref|YP_003203260.1| SOS-response transcriptional repressor, LexA [Nakamurella
           multipartita DSM 44233]
 gi|258557329|gb|ACV80271.1| SOS-response transcriptional repressor, LexA [Nakamurella
           multipartita DSM 44233]
          Length = 252

 Score = 98.7 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 62/221 (28%), Gaps = 25/221 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           T   HK I + I    ER    PS   +   AGL   S    +   +E R          
Sbjct: 48  TMRQHK-ILQVIRDSVERRGYPPSVREIGDAAGLKSPSSVAHQLKVLEKRG--------- 97

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +L         +   P  D     +    +P   + P          +       +   
Sbjct: 98  -LLRRDPNRPRAVDIRPLDDAMPDTEATHPLPSPSYVPVVGRIAAGGPILAEQAIEDVFP 156

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P+           +      K    SM+      GD +++      + GD +      G
Sbjct: 157 LPKEIVG-------EGTLFLLKVVGDSMIDAAITDGDWVVVRQQPVADNGDIVAAMID-G 208

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K    +    + LM  N  Y        +   + R++
Sbjct: 209 EATVKTFKRK-DGHVWLMPHNAAYEPI--PGDEAVVLGRVV 246


>gi|188025838|ref|ZP_02959981.2| hypothetical protein PROSTU_01881 [Providencia stuartii ATCC 25827]
 gi|188020664|gb|EDU58704.1| hypothetical protein PROSTU_01881 [Providencia stuartii ATCC 25827]
          Length = 250

 Score = 98.7 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 64/225 (28%), Gaps = 20/225 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA-ATNETI 69
           + ++   +    T   LA+  G+  +S N+        R     T  I K+L        
Sbjct: 23  DRLNIAMQNAGYTQGALAKAVGMAQSSINQLLNKASGSR----KTVEIAKVLGVRAEWLA 78

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR----S 125
                +  S+  + +                        +  G        P+I      
Sbjct: 79  SGEGSMLPSEQYSVKHLTDSNENELATNDSYTVDLMDIEYSCGPGSYNSDFPDIIRSISL 138

Query: 126 PHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                 +I              Q  SM       D++ ++  ++   GD +      G  
Sbjct: 139 EPEFALSIFGGRPASSMKAINAQGDSMQGTIDPEDLVFIDITVKRFEGDGVYAFTFGGSS 198

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI---ARIL--W 220
             K L   +   I L S N  Y    ++ S+ E +    +++  W
Sbjct: 199 HIKRLQKIKNHLIVL-SDNPAYKEWKIDESEEEQLFIDGKVIVSW 242


>gi|153000378|ref|YP_001366059.1| putative prophage repressor [Shewanella baltica OS185]
 gi|160876505|ref|YP_001555821.1| XRE family transcriptional regulator [Shewanella baltica OS195]
 gi|151364996|gb|ABS07996.1| putative prophage repressor [Shewanella baltica OS185]
 gi|160862027|gb|ABX50561.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
          Length = 221

 Score = 98.7 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 33/223 (14%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +   +T S LA K G+   +          G  R PS E I  ++         L
Sbjct: 9   VKTRMKEAGVTQSMLAEKMGMSQGAIAHWL-----GGKRKPSIEDIASMMNIVGIRHMTL 63

Query: 73  LDLPFSDGRTT-----------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                 D   +                  P++ +  +G+         P           
Sbjct: 64  GADGLIDYPDSVLGNTEELPAKISYVNSFPVISYVQAGAWTEAVESC-PASALDEWQDTT 122

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPR 176
           E  S               + Q  SM       + +G ++++++      G  ++     
Sbjct: 123 ERTSE---------NCFWLRVQGDSMTTPAGISFPEGTLILIDAEKDYQNGSFVVAKLTD 173

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K L+   G+   L  LN  YP   +  +  + I  ++
Sbjct: 174 INEATFKKLVIDAGQKF-LRPLNTAYPTLPINGN-CKIIGVVV 214


>gi|15832244|ref|NP_311017.1| prophage repressor CI [Escherichia coli O157:H7 str. Sakai]
 gi|168764190|ref|ZP_02789197.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
 gi|11875129|dbj|BAB19608.1| CI protein [Enterobacteria phage VT1-Sakai]
 gi|13362459|dbj|BAB36413.1| putative prophage repressor CI [Escherichia coli O157:H7 str.
           Sakai]
 gi|189365770|gb|EDU84186.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
 gi|326343910|gb|EGD67671.1| Putative prophage repressor CI [Escherichia coli O157:H7 str. 1044]
          Length = 212

 Score = 98.7 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 27/221 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ I E I  + E   L+ + LA+  G    S    +    E   R  S +    + AA 
Sbjct: 2   HEIIGERIKSLREAKGLSQAQLAKLCGWAAPS----RLGNYELGTRKVSADDALVLGAAL 57

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  +++         ++   ++     F    +G F + G +   +    V      S
Sbjct: 58  GVSPAKIMFGED-----SDAVFRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPTTTKAS 112

Query: 126 PHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG- 178
                     +    + +  SM       P + +G +++++ A  V  GD  +       
Sbjct: 113 E---------KAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAEPVESGDFCVASANGDS 163

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K      G S  L+ LN  Y     + S    I +++
Sbjct: 164 EATFKKYEKDAGVSY-LVPLNPAYRTLDCDHS-CRIIGKVV 202


>gi|257467069|ref|ZP_05631380.1| LexA repressor [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918203|ref|ZP_07914443.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692078|gb|EFS28913.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 252

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 7/212 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI--FKILAATNE 67
            + I     R  LT   L  K G+     +  +        +   T  +   +       
Sbjct: 5   GDIIRAFRAREGLTGQELGDKIGVSQAFIHLMESDKRRVPQKTMETLKLMLSREDYLDIL 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              +    P       ++                 +        G        P      
Sbjct: 65  KYEEYATTPDFIKNELKRISNFSKEDIISEFEMREYPIYDSVSAGFGIIPDAAPIEYISL 124

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLI 186
                ++ +         SM P    GDI+++   I+V  G+  + +   TG+   K L 
Sbjct: 125 P---ILRGEIVGIYVVGNSMEPSISDGDIILVKKDIEVQVGEIGVFVNQVTGEGFVKRLK 181

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +      L S N  Y    ++  DI    ++
Sbjct: 182 YK-NGCYILKSDNPMYTDVEIQSDDIICCGKV 212


>gi|94496455|ref|ZP_01303032.1| SOS-response transcriptional repressor [Sphingomonas sp. SKA58]
 gi|94424201|gb|EAT09225.1| SOS-response transcriptional repressor [Sphingomonas sp. SKA58]
          Length = 223

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 43/220 (19%), Gaps = 9/220 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +   +++   I    E   ++PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTPKQQELLSFIHDRLEEGGVSPSFEEMKDALDLRSKSGIHRLINALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L                     +                     +   P        
Sbjct: 61  ARALEVLKLPDAMHRAPVPPVALAAKAAAPIPIAANDVLEIPLHGRIAAGVPIEAMEGQ- 119

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                                 +    SM       GD  ++        G  ++     
Sbjct: 120 ----AMLSVPAALLGSGDHYALEVSGDSMVEAGILDGDFALIQRTDVAREGQIVVALIDD 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            +   K         + L   N  Y     +   +    +
Sbjct: 176 NEATLKYFRRDGA-RVRLDPANPAYEPQVYDPRQVRIQGK 214


>gi|16078848|ref|NP_389668.1| LexA repressor [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309672|ref|ZP_03591519.1| LexA repressor [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313994|ref|ZP_03595799.1| LexA repressor [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318916|ref|ZP_03600210.1| LexA repressor [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323190|ref|ZP_03604484.1| LexA repressor [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321311427|ref|YP_004203714.1| LexA repressor [Bacillus subtilis BSn5]
 gi|399378|sp|P31080|LEXA_BACSU RecName: Full=LexA repressor; AltName: Full=SOS regulatory protein
           dinR
 gi|289288|gb|AAA22573.1| lexA [Bacillus subtilis]
 gi|2634169|emb|CAB13669.1| transcriptional repressor of the SOS regulon [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484394|dbj|BAI85469.1| LexA repressor [Bacillus subtilis subsp. natto BEST195]
 gi|320017701|gb|ADV92687.1| LexA repressor [Bacillus subtilis BSn5]
          Length = 205

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 37/227 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S ++  I   I    +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                      + +     +   P        S +    N
Sbjct: 61  TKPRAIEILDE--------------------EVDIPQSQVVNVPVIGKVTAGSPITAVEN 100

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +P+   P              +    SM+       D +I+      N G+ ++
Sbjct: 101 IEEYFPLPDRMVPP------DEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVV 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         I L   N       ++   +  + +++
Sbjct: 155 AMTEDDEATVKRFYK-EDTHIRLQPENPTMEPIILQN--VSILGKVI 198


>gi|295399936|ref|ZP_06809917.1| transcriptional repressor, LexA family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978339|gb|EFG53936.1| transcriptional repressor, LexA family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 207

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S   ++I + I +  +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQQQILDFIKKEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                          E   +   P          +    N
Sbjct: 61  TKPRAIEILD------------------ADFSARNETDDVISVPIIGKVTAGQPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             +   +P        + + +      +    SM       GD +I+      + GD ++
Sbjct: 103 IEDYFPLP------KRLISSEDHVFMLEVMGDSMIEAGILDGDYVIVRQQQSADNGDIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +   I L   N       V   D   + +++
Sbjct: 157 AMTEENEATVKRFFKEKD-HIRLQPENSSLEPIIVR--DCTILGKVI 200


>gi|307329249|ref|ZP_07608414.1| transcriptional repressor, LexA family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885148|gb|EFN16169.1| transcriptional repressor, LexA family [Streptomyces violaceusniger
           Tu 4113]
          Length = 267

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 52/219 (23%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 66  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 115

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                        P   + P          +    +  +   +P
Sbjct: 116 --RDPHRPRAYEVRGSDQPSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 173

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 174 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 225

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 226 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 261


>gi|290956952|ref|YP_003488134.1| SOS repressor LexA [Streptomyces scabiei 87.22]
 gi|260646478|emb|CBG69575.1| SOS repressor LexA [Streptomyces scabiei 87.22]
          Length = 258

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 52/219 (23%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 57  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                        P   + P          +    +  +   +P
Sbjct: 107 --RDPHRPRAYEVRGSDQASAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 164

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 165 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 216

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 217 TVKRFKR-EDGHVWLLPHNAAYEPI--PGDDATILGKVV 252


>gi|326791322|ref|YP_004309143.1| SOS-response transcriptional repressor, LexA [Clostridium
           lentocellum DSM 5427]
 gi|326542086|gb|ADZ83945.1| SOS-response transcriptional repressor, LexA [Clostridium
           lentocellum DSM 5427]
          Length = 203

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 63/221 (28%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I   I +  +     PS   L    GL  TS   S    +E +    R PS     
Sbjct: 8   KQQQILSCIKQNLKEKGYPPSVRELCIAVGLSSTSTVHSHLNTLEKKGFIKRDPSKPRTI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL      +                       +   P        + +    N      
Sbjct: 68  EILDEEMNWLEDH--------------------VSAVPIVGKVTAGAPILAVENIEEYFP 107

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P+  + H        +      + TSM+      GD +I+        G+ ++      
Sbjct: 108 LPKHLTRHE-------ETFMLNVKGTSMINAGILDGDQIIVRHQDSARNGEIVVALI-ED 159

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++  K     +     L   N        +  D++ + +++
Sbjct: 160 EVTVKRFFKEKD-CFRLQPENDTMDPIYCQ--DVKILGKVI 197


>gi|119718039|ref|YP_925004.1| LexA repressor [Nocardioides sp. JS614]
 gi|171704656|sp|A1SND2|LEXA_NOCSJ RecName: Full=LexA repressor
 gi|119538700|gb|ABL83317.1| SOS-response transcriptional repressor, LexA [Nocardioides sp.
           JS614]
          Length = 246

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 59/219 (26%), Gaps = 17/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
            +++   I    E+    PS   +    GL  +S   ++ K    +G   R P      +
Sbjct: 32  QQRVLAHIKDSIEKRGYPPSMREIGEAVGLTSSSSVAHQLKTLEEKGFLKRDPHRPRALE 91

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +         + +                +P   + P          +       +   +
Sbjct: 92  VFLPEVMAARRSMSAAEESSFDETGVGDALPAAQYVPVVGRIAAGGPILAEERVEDVFPL 151

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P              Q    + +  SM       GD + +        G+ +      G+
Sbjct: 152 PRQLVG-------DGQLFLLEVRGDSMIEAAICDGDYVAIRQQPTAENGEIVAAMID-GE 203

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K    + G  + L+  N  Y     + +    + ++
Sbjct: 204 ATVKTFQRKDGN-VWLLPHNPAYDPI--DGTHATILGKV 239


>gi|254492240|ref|ZP_05105414.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010]
 gi|224462565|gb|EEF78840.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010]
          Length = 209

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 99  GSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIY----AIQTQDTRHKTQDTSMLPLY 151
            +           GN +          +      IY    +          +  SM P  
Sbjct: 71  FAHIPLFDVKASAGNGYVIHEEEETDALIFKKEWIYNELHSSPANLYLIYVEGESMEPAL 130

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS- 210
           R GD+++++    V   D + +      ++ K L     + + + S N  Y    + +  
Sbjct: 131 RPGDVILVDHTDNVAKRDGIYVIRMGESLLVKRLQRLPSQRLKVTSDNPAYEPFEISLDF 190

Query: 211 ----DIEWIARILWA 221
               ++  I R++W+
Sbjct: 191 DLQNELSIIGRVVWS 205


>gi|157737469|ref|YP_001490152.1| S24 family peptidase [Arcobacter butzleri RM4018]
 gi|157699323|gb|ABV67483.1| peptidase, S24 family [Arcobacter butzleri RM4018]
          Length = 218

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 14/221 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
            F   +I E +  +              +A+   L   +F   K  G           +I
Sbjct: 1   MFIVDEIIEKLKDIISADGKNGKVFDKDVAKSLELSQANFATMKNRGKIPFT------NI 54

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
               A    +I  LL     D       +  I         +GG        + + + ++
Sbjct: 55  LNFCAKKKISINWLLYNQNPDSLIDATDKYWIKYYPSVSVSAGGGAYE----SEDNFESL 110

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +P       G                SM P     +I+ ++        D +       
Sbjct: 111 ELPRYFVNMLGGNENLKNIDAINVIGDSMEPTLNSDNIIFIDKTKNDVSRDGIYAFTTIH 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +  K +  R    +D++S N  YP   +  +D+E + +++
Sbjct: 171 GLFVKRIQRRVDGKLDIISDNKDYPSQVLNKNDLEILGKVI 211


>gi|27379937|ref|NP_771466.1| LexA repressor [Bradyrhizobium japonicum USDA 110]
 gi|44888103|sp|Q89KS7|LEXA_BRAJA RecName: Full=LexA repressor
 gi|27353090|dbj|BAC50091.1| LexA repressor [Bradyrhizobium japonicum USDA 110]
          Length = 231

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 8/226 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQYELLRFISERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS----GGFFDSGVFPTGNK 114
            + +        Q           +  +     +     +            G    G  
Sbjct: 61  ARAIEVIKLPELQAAAGNRRGFTPSVIEGNLGKVRASSSADEGERPVAVPVMGRIAAGTP 120

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
              +                 +    + +  SM       GD+ ++      + GD ++ 
Sbjct: 121 IEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVEAGILDGDMALIQRNESADTGDIVVA 180

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K    R   SI L   N  Y V  +  + ++   +++
Sbjct: 181 LIDDEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVKIQGKLI 225


>gi|85716978|ref|ZP_01047941.1| LexA repressor [Nitrobacter sp. Nb-311A]
 gi|85696180|gb|EAQ34075.1| LexA repressor [Nitrobacter sp. Nb-311A]
          Length = 233

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 59/228 (25%), Gaps = 10/228 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++   I+   +   + PS   +     L   +  ++      +R  I      
Sbjct: 1   MLTRKQYELLRFINERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+         +    P        K  +                  G    G
Sbjct: 61  ARAIEVIKLPELAASGGGRRGFTPSVIEGNLGKVRRNSGGSVEDGERPVAVPVMGRIAAG 120

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171
                +                 +    + +  SM       GD+ ++      + GD +
Sbjct: 121 TPIEALQTCSHTISLPPDMLGTGEHYALEVRGDSMVEAGILDGDLALIQRNQTADTGDIV 180

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K    R   SI L   N  Y V  +  + ++   R++
Sbjct: 181 VALIDDEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVQIQGRLI 227


>gi|330829454|ref|YP_004392406.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas
           veronii B565]
 gi|328804590|gb|AEB49789.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas
           veronii B565]
          Length = 248

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 20/230 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + S     + +D +     L+    A   G+  +   K         N  P+ +   +
Sbjct: 25  MDTLS-----DRLDELRGS--LSYKAFAELVGMSESGMRKYF----PPFNSLPTIDKALR 73

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVG 119
           I    N  +  L             ++      +    +   G+  +     G   +   
Sbjct: 74  IARTFNVNLEWLATGQGPKHPDGTAEQMVQREEFDEEYALIDGYHVTVSTGHGAFNDDHE 133

Query: 120 VPEIRSPHNGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           V    +                     +  SM P    GD ++++ +        + +  
Sbjct: 134 VKRKLAFRRKWLTFRKLNPDNLVVVFAKGDSMEPTIHSGDSILVDISKNQIEDGSIFVLR 193

Query: 176 RTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIE---WIARILWA 221
              ++ AK L       I ++S N   YP+  V  + +E    I +++WA
Sbjct: 194 LGEELYAKRLQKNFDGGITIISDNRDDYPLQVVPANQLENLAVIGKVVWA 243


>gi|300784298|ref|YP_003764589.1| LexA family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299793812|gb|ADJ44187.1| LexA family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 241

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 63/219 (28%), Gaps = 25/219 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNRWPSTESIFKI 61
            +++ + I     R    PS   +    GL  TS   ++ +    +G  R          
Sbjct: 37  QQQVLDVIRSWVSRFGYPPSVREIGEAVGLTSTSSVSHQLRALQRKGYLRR--------- 87

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
            A     +  L     +       ++  +P   + P          V       +   +P
Sbjct: 88  DANRPRAVGVLSATDDNPMGIEMDQQPVMPKAAYVPLVGRIAAGGPVLAEQAIEDVFPLP 147

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       + +    K    SM+      GD +++      + G+ +      G+ 
Sbjct: 148 REIVG-------EGELFLLKVTGDSMIDAAITDGDWVVVRQQPDADNGEIVAAMID-GEA 199

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    + G  I LM  N  Y        D   + +++
Sbjct: 200 TVKTFKRK-GGHIWLMPHNEAYEPI--PGDDATVLGKVV 235


>gi|294815512|ref|ZP_06774155.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
 gi|326443863|ref|ZP_08218597.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
 gi|3402269|emb|CAA12169.1| LexA protein [Streptomyces clavuligerus]
 gi|294328111|gb|EFG09754.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
          Length = 264

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 52/219 (23%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 63  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 112

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                        P   + P          +    +  +   +P
Sbjct: 113 --RDPHRPRAYEVRGSDQPSAQPADTSGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 170

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 171 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 222

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 223 TVKRFKR-ENGHVWLLPHNAAYQPI--PGDDATILGKVV 258


>gi|256784772|ref|ZP_05523203.1| LexA repressor [Streptomyces lividans TK24]
 gi|289768659|ref|ZP_06528037.1| LexA repressor [Streptomyces lividans TK24]
 gi|68449792|emb|CAJ01780.1| SOS regulatory protein LexA [Streptomyces coelicolor A3(2)]
 gi|289698858|gb|EFD66287.1| LexA repressor [Streptomyces lividans TK24]
          Length = 259

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 57  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 107 -RDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 218 TVKRFKR-EDGHVWLLPHNSAYEPI--PGDDATILGKVV 253


>gi|86749926|ref|YP_486422.1| LexA repressor [Rhodopseudomonas palustris HaA2]
 gi|123292537|sp|Q2IW99|LEXA_RHOP2 RecName: Full=LexA repressor
 gi|86572954|gb|ABD07511.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas
           palustris HaA2]
          Length = 234

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 11/229 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++ + I+   +   + PS   +     L   +  ++      +R  I      
Sbjct: 1   MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                + K+      +  +    P        + +             +      G    
Sbjct: 61  ARAIEVIKLPDLGGNSGARRGFTPSVIEGNLGKVRPPSPQHAEDDSDRNVAVPVMGRIAA 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
           G     +                 +    + +  SM+      GD+ ++      + GD 
Sbjct: 121 GTPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMMDAGILDGDMALIQRNESADTGDI 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    R   SI L   N  Y V  +  + +    +++
Sbjct: 181 VVALIDEEEATLKRFRRRGA-SIALEPANSAYEVRILPPNRVRIQGKLI 228


>gi|297202845|ref|ZP_06920242.1| LexA repressor [Streptomyces sviceus ATCC 29083]
 gi|197717329|gb|EDY61363.1| LexA repressor [Streptomyces sviceus ATCC 29083]
          Length = 259

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 57  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 107 -RDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIV-AAMLEGEA 217

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 218 TVKRFKR-EDGHVWLLPHNSAYEPI--PGDDATILGKVV 253


>gi|29829005|ref|NP_823639.1| LexA repressor [Streptomyces avermitilis MA-4680]
 gi|29606111|dbj|BAC70174.1| putative SOS regulatory protein LexA [Streptomyces avermitilis
           MA-4680]
          Length = 259

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 57  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 107 -RDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 218 TVKRFKR-EDGHVWLLPHNSAYQPI--PGDEATILGKVV 253


>gi|296534190|ref|ZP_06896677.1| prophage MuMc02 [Roseomonas cervicalis ATCC 49957]
 gi|296265462|gb|EFH11600.1| prophage MuMc02 [Roseomonas cervicalis ATCC 49957]
          Length = 266

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 63/226 (27%), Gaps = 14/226 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE-----SIFKILA 63
           I E +    E   L    +A KAG+   +     R G                S+  +L 
Sbjct: 36  IIERLKAAIEASGLKAPEVAEKAGIPLKTLANYMRGGGMKVLGAVRLAQACGVSVEWLLT 95

Query: 64  ATNETICQLL-DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT----V 118
                I             +    + E                +               +
Sbjct: 96  GVGPGIGTPTGATSEPCQISKHHPKNEHDFPDLIRLPRYDVRAAAGDGAEVVSEHVAEFI 155

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              E       +          +    SM P    GD LI+++ +     D + +     
Sbjct: 156 AFSESWIK-QTLRRKPDGLAIIEAVGNSMSPTINDGDTLIIDTKVVEANSDGIYVLSVRN 214

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
            ++ K +  +    I ++S N  +    ++ SD   +  + ++LWA
Sbjct: 215 GLMVKRIQLQIDGDILVISDNPSFEPKRIQASDFDAMRIVGQVLWA 260


>gi|126461478|ref|YP_001042592.1| LexA repressor [Rhodobacter sphaeroides ATCC 17029]
 gi|171855217|sp|A3PHK4|LEXA_RHOS1 RecName: Full=LexA repressor
 gi|126103142|gb|ABN75820.1| SOS-response transcriptional repressor, LexA [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 227

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 5/221 (2%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESIFK 60
           +    ++ + I    +R  + PS    K  LD  S +   R       R          +
Sbjct: 2   TRKQMELLDFIKTRMDRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHRAR 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-G 119
            +               +              +    +G+      G    G     + G
Sbjct: 62  AIEIVKLPEAMERAGFSARAAKAAAAPLPKGAVTVETAGALDLPLMGRIAAGLPIEAING 121

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
            P+  +    + + + Q    + +  SM+      GDI+++      + GD ++      
Sbjct: 122 GPQSVTVPGMMLSGRGQHYALEVKGDSMIAAGINDGDIVVIREQQTADNGDIVVALVADH 181

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K    R G  I L   N  Y         ++   R++
Sbjct: 182 EATLKRYRRR-GGMIALEPANDSYETQVYPEQMVKVQGRLV 221


>gi|163742788|ref|ZP_02150173.1| LexA repressor [Phaeobacter gallaeciensis 2.10]
 gi|161384043|gb|EDQ08427.1| LexA repressor [Phaeobacter gallaeciensis 2.10]
          Length = 224

 Score = 98.3 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 9/223 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +     + + I+   ++  + PS    K  LD  S +   R       R      I +
Sbjct: 1   MLTKKQLDLLDFINTRLQQDGVPPSFDEMKVALDLRSKSGIHRLITALEERGF----IRR 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--SGGFFDSGVFPTGNKWNTV 118
           +           L     +                 P+   +      G    G     +
Sbjct: 57  LAHRARAIEIIRLPDSLGNTAEAAPAAPGPANEVSAPAMIAAMELPVMGRIAAGVPIEAI 116

Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                +        + Q Q    + +  SM       GDI+++      + GD ++    
Sbjct: 117 NQVSHQVAVPASMLSAQGQHFALEVRGDSMIEAGINDGDIVVIRETAVADNGDVVVALVE 176

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K +  + G +I L + N  Y         ++   R++
Sbjct: 177 GQEATLKRIYRK-GSTIALEAANPAYETRRYRQDQVKVQGRLV 218


>gi|296129413|ref|YP_003636663.1| transcriptional repressor, LexA family [Cellulomonas flavigena DSM
           20109]
 gi|296021228|gb|ADG74464.1| transcriptional repressor, LexA family [Cellulomonas flavigena DSM
           20109]
          Length = 252

 Score = 98.3 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 19/219 (8%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFKIL- 62
           + E +    E+    PS   +    GL   S  K +   +E +    R P      +++ 
Sbjct: 39  VLETVRASVEQRGYPPSMREIGDAVGLTSPSSVKHQLTALERKGYLRRDPHRPRAIEVVQ 98

Query: 63  -AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                   +    P   + P          +       +   +P
Sbjct: 99  PDDARTVAPWTSRPDGPAVDPDTPERDGAPAPSYVPVVGRIAAGGPILAEQVVEDVFPLP 158

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       + +    K    SM       GD +++        G+ +      G+ 
Sbjct: 159 RQLVG-------EGELFLLKVAGDSMIEAAICDGDWVVVRRQPVAENGEIVAAMID-GEA 210

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L       + L+  N  Y     + +D   + R++
Sbjct: 211 TVKTLKRV-DGRVWLLPHNPAYTPI--DGTDATVLGRVV 246


>gi|91977309|ref|YP_569968.1| LexA repressor [Rhodopseudomonas palustris BisB5]
 gi|123735363|sp|Q136C2|LEXA_RHOPS RecName: Full=LexA repressor
 gi|91683765|gb|ABE40067.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas
           palustris BisB5]
          Length = 235

 Score = 98.3 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 60/230 (26%), Gaps = 12/230 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++ + I+   +   + PS   +     L   +  ++      +R  I      
Sbjct: 1   MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV--FP 110
                + K+      T         S    T  K +     +             +    
Sbjct: 61  ARAIEVIKLPDLGGNTGGGRRGFTPSVIEGTLGKVRPPSHSHAEDESDRNVAVPVMGRIA 120

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
            G     +                 +    + +  SM       GD+ ++        GD
Sbjct: 121 AGTPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVEAGILDGDMALIQRNESAETGD 180

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K    R   SI L   N  Y V  +  + +    +++
Sbjct: 181 IVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 229


>gi|319648635|ref|ZP_08002847.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
 gi|317389283|gb|EFV70098.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
          Length = 210

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 22/220 (10%)

Query: 7   KKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+I    + +  +R  ++ + +AR   +   + +   +     R      + I  +    
Sbjct: 8   KEIMANNLKKQLKRKGISQTMMARDLNIPEMTVSNWVKGKTYPRP-----DKIQLMADYF 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             T  QL +   S+      +   IP+L              +    N    +     + 
Sbjct: 63  GITRTQLTEEAPSNLTPLAPQTIPIPVL------GTIACGEPILAEENVTEYMYESPDQL 116

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKV 184
           P              K + TSM P    G  +++    +V  G    ++     +   K 
Sbjct: 117 PS-------GNLFYLKAKGTSMEPTIPDGSYVLVREQPEVENGAIAAVLVNGDTEATLKR 169

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILWASQ 223
           +  + G  + LM  N  Y    +   +    I + +  +Q
Sbjct: 170 IKRQ-GDMVILMPDNPNYSPFIITPDNPARVIGQAIQFTQ 208


>gi|302557999|ref|ZP_07310341.1| LexA repressor [Streptomyces griseoflavus Tu4000]
 gi|302475617|gb|EFL38710.1| LexA repressor [Streptomyces griseoflavus Tu4000]
          Length = 259

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 57  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 107 -RDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 218 TVKRFKR-EDGHVWLLPHNAAYEPI--PGDDATILGKVV 253


>gi|302554607|ref|ZP_07306949.1| LexA repressor [Streptomyces viridochromogenes DSM 40736]
 gi|302472225|gb|EFL35318.1| LexA repressor [Streptomyces viridochromogenes DSM 40736]
          Length = 259

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 57  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 107 -RDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 217

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 218 TVKRFKR-EDGHVWLLPHNAAYEPI--PGDDATILGKVV 253


>gi|323137198|ref|ZP_08072277.1| transcriptional repressor, LexA family [Methylocystis sp. ATCC
           49242]
 gi|322397556|gb|EFY00079.1| transcriptional repressor, LexA family [Methylocystis sp. ATCC
           49242]
          Length = 237

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 54/232 (23%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +     +   I    +   + PS    K  LD  S +   R  +    R       + 
Sbjct: 1   MLTKKQSDLLRFIHERLKESGVPPSFDEMKDALDLRSKSGIHRLILALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP----------SGSGGFFDSGV 108
            + L                              L                +      G 
Sbjct: 61  ARALEVLRLPESATPRGGGGSRGGKFSPAVIEGNLGRVRPLHERREEETGQNVAIPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G   + +                 +    + +  SM       GD +++      + 
Sbjct: 121 IAAGTPISAIQSRSHTISLPPDLLTSGEHYALEVRGDSMIEAGILDGDTVVIKKQDNADT 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K L  R   SI L + N  Y         +    +++
Sbjct: 181 GDIVVALIDDEEATLKRLRKRGA-SIALEAANPAYETRIFGPDRVRIQGKLV 231


>gi|330888348|gb|EGH21009.1| peptidase [Pseudomonas syringae pv. mori str. 301020]
          Length = 233

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 19/219 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + + +  +   LT + LA ++G+   S ++ +R          ++  + K       
Sbjct: 22  ELKDRLKQARKHARLTQAELAERSGIKQASVSEIERGLTR------TSGYLVKFATICRV 75

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               L +   S           +            +        G     V         
Sbjct: 76  DPVWLSEGVGSMISIGAPSNVAMIDQPVA---MYRYPVVSTVAAGAWAEAVEPDFSDRYE 132

Query: 128 NGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182
              Y  + +    +    SM         +G +++++  ++   G  ++   P + +   
Sbjct: 133 TSDYKAKGRAFWLEVSGDSMTAPSGMSVPEGMLILVDPGVEARPGKLVVAKLPSSNEATF 192

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218
           K LI      + L  LN  Y +      D + I    R+
Sbjct: 193 KKLI-DDAGQLYLKPLNPGYSMIKCT-DDCKIIGVAVRV 229


>gi|325288497|ref|YP_004264678.1| phage repressor like transcriptional regulator, XRE family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963898|gb|ADY54677.1| phage repressor like transcriptional regulator, XRE family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 201

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 68/209 (32%), Gaps = 26/209 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++  +  LT   L    G+   + NK +   +E   R     +I K+ A    +  QL
Sbjct: 7   IKQLRLKKGLTQEELGNLIGVKRAAVNKWETGSVENLKRS----TIEKLSAIFGVSPIQL 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L            + +   +L   P        +GV            PE          
Sbjct: 63  L---------GLTEAEPRDVLVSLPIVGRISCGNGVLAYEEIEGYEPTPETWLNG----- 108

Query: 133 IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
              +    + +  SM     + GD+L++     V+ G+   +       V K +    G 
Sbjct: 109 --GEYFYLRAKGDSMKNARIQDGDLLLIRQQPDVDDGEIAAVLIN-DQAVLKKVYK-TGD 164

Query: 192 SIDLMSLNCCYPVDTVEMSD---IEWIAR 217
           ++ L S N  YP    +  +   +  I +
Sbjct: 165 TLVLQSENPDYPPIVCDGKEDYSVRIIGK 193


>gi|167034439|ref|YP_001669670.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860927|gb|ABY99334.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 228

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 15/207 (7%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           +T + LAR  G+   S N        G+ +    +++         T   L     +  +
Sbjct: 18  ITQASLARACGITAPSVNDWL----SGKTKTIEGQNLLLAAEHLGVTPKWLATGRGAMKK 73

Query: 82  TTEKKEKEIPLLYFPPS-GSGGFFDSGVFPTGNKWNTVGV--PEIRSPHNGIYAIQTQDT 138
           +   + +   +        S  + +      G     V +    +   H           
Sbjct: 74  SPSGEVESSNVEAALQPTRSFSYPEISWVQAGIAREAVEMGNIALCPQHTSDVWAGEDAF 133

Query: 139 RHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRS 192
             +    SM      P + +G ++++   I+   G  ++ +   T +   K L+      
Sbjct: 134 WLRVIGDSMTLSSGSPSFPEGFLILIAPDIEPRPGQFVVARMTSTNEATFKQLVRD-AGE 192

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + L  LN  YP   V+    E +  ++
Sbjct: 193 LYLKPLNSAYPTRAVD-DAWEIVGTVV 218


>gi|323967257|gb|EGB62681.1| peptidase S24 [Escherichia coli M863]
          Length = 217

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 58/214 (27%), Gaps = 15/214 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R       R PS + I  +            
Sbjct: 8   RSRMKELGITQEKLAEELGMTQGGIGHWLRGY-----RHPSLDEIGVVFKYLGIDNVSFN 62

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129
                                +P                F  G+    V   +  S    
Sbjct: 63  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 122

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
              ++       T      P +  G +++++    V  GD  + +    +   K LI   
Sbjct: 123 WLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDS 179

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           G+   L  LN  YP+          + +++ ASQ
Sbjct: 180 GQVF-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 210


>gi|258454473|ref|ZP_05702440.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937]
 gi|257863330|gb|EEV86091.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937]
          Length = 238

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 31/236 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++     ++ S L+R+ G+   S +       E +        + K L      + 
Sbjct: 6   DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63

Query: 71  QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGGFFDSGVFP------------ 110
                        +           ++  +L +  +      +                 
Sbjct: 64  GFDISKNRKVENNDITSIYSKLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSE 123

Query: 111 ------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                            E  S       +   D   K    SM PL++ G I+ +  +  
Sbjct: 124 VDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNGQIIFIEKSHT 183

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   +     GD   K +       + L+SLN  Y      +   +  + +++
Sbjct: 184 IKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLYFYDNESVRLVGKVI 237


>gi|332686955|ref|YP_004456729.1| SOS-response repressor and protease LexA [Melissococcus plutonius
           ATCC 35311]
 gi|332370964|dbj|BAK21920.1| SOS-response repressor and protease LexA [Melissococcus plutonius
           ATCC 35311]
          Length = 236

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 28/236 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I    +   L+   +A K G+  ++  + ++  IE        E+I  IL  +   
Sbjct: 3   IGERIKARRKELKLSADIVAEKLGVSRSTIFRYEKGDIEKLPTNI-LENIAIILHTSPAY 61

Query: 69  ICQL---------------------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           +                                   + +   + L               
Sbjct: 62  LMGWEENGPNITILYNKLNAKNQKLTYNFAERRLEEQSQVNSLSLHQKTHQKDHFRLFDW 121

Query: 108 VFPTGNKWNTV---GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                                        +T D        SM P+++  + + +     
Sbjct: 122 CGYVSAGTGEYLDGEDIRETIQLLEEDIPETADFALTVNGDSMKPVFKNHETIFIEKTTD 181

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
           +  G   ++     +   K +       I L+SLN  Y    ++ +D I+ + R++
Sbjct: 182 LPSGSIGIVI-VENEAYLKKIYIH-DDCITLVSLNPAYKNIIIKETDAIKVVGRVV 235


>gi|328885526|emb|CCA58765.1| SOS-response repressor and protease LexA [Streptomyces venezuelae
           ATCC 10712]
          Length = 262

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 53/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 61  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 110

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               T        P   + P          +    +  +   +P
Sbjct: 111 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 168

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 169 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 220

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 221 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 256


>gi|296270391|ref|YP_003653023.1| SOS-response transcriptional repressor LexA [Thermobispora bispora
           DSM 43833]
 gi|296093178|gb|ADG89130.1| SOS-response transcriptional repressor, LexA [Thermobispora bispora
           DSM 43833]
          Length = 238

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 20/219 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNRWPSTESIFKI 61
            +KI E I    +R    PS   +     L  TS   ++      +G  R          
Sbjct: 29  QRKILEVIRDSVQRRGYPPSMREIGEAVQLTSTSSVSHQLSALQRKGYLRRDPHRPRALE 88

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +    E    +          T  + +   +       +GG          +  +   +P
Sbjct: 89  VRLPGEPAFWVDPDASQGEEGTVSRPQTAYVPVVGRIAAGGPI----LAEQSIEDVFPLP 144

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       +      +    SM       GD +++        GD +      G+ 
Sbjct: 145 RQLVG-------EGTLFLLRVTGDSMIEAAIADGDWVVVRQQPVAENGDIVAAMID-GEA 196

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + L+  N  Y        +   + +++
Sbjct: 197 TVKRFKRK-DGRVWLVPHNPNYEPI--PGDEATILGKVV 232


>gi|254719207|ref|ZP_05181018.1| LexA repressor [Brucella sp. 83/13]
 gi|265984203|ref|ZP_06096938.1| LexA repressor [Brucella sp. 83/13]
 gi|306837955|ref|ZP_07470813.1| LexA repressor [Brucella sp. NF 2653]
 gi|264662795|gb|EEZ33056.1| LexA repressor [Brucella sp. 83/13]
 gi|306406879|gb|EFM63100.1| LexA repressor [Brucella sp. NF 2653]
          Length = 240

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDG-------------RTTEKKEKEIPLLYFPPSGSGGFFD 105
            + L            L                     +               +     
Sbjct: 61  ARALEVLCLPDSIAPGLSPQKKFAPSVIEGSLGKVAPVQPVRPAPAPQNSEAPATVSVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
            G    G   + +                 +    + +  SM+      GD +I+     
Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N G+ ++      +   K    +   SI L + N  Y         +    +++
Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234


>gi|118589993|ref|ZP_01547397.1| LexA repressor [Stappia aggregata IAM 12614]
 gi|118437490|gb|EAV44127.1| LexA repressor [Stappia aggregata IAM 12614]
          Length = 236

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 58/231 (25%), Gaps = 13/231 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQYELLMFIHERLKETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVF 109
            + +            L     R +   E     L  P                   G  
Sbjct: 61  ARAMEVVRLPDSIAPGLGTPRPRGSFSPEVIEGSLGKPEPAKAAPEPVIGVTEVPVMGRI 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCG 168
             G     +               + +    + +  SM       GD +++      + G
Sbjct: 121 AAGVPIEAIQTHSHSITVPQDLIGRGEHYALEVRGDSMIEAGILDGDTVLIRRTDSADSG 180

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++      +   K L  +   SI L + N  Y         +    R++
Sbjct: 181 DIVVALVDDEEATLKRLRKKGA-SIALEAANPAYETRIFGPGRVRVQGRLV 230


>gi|260868710|ref|YP_003235112.1| putative phage repressor protein CI [Escherichia coli O111:H- str.
           11128]
 gi|257765066|dbj|BAI36561.1| putative phage repressor protein CI [Escherichia coli O111:H- str.
           11128]
          Length = 207

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 15/211 (7%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            +   +T   LA + G+         R      +R PS + I  +               
Sbjct: 1   MKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFNHDG 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNGIYA 132
                             +P                F  G+    V   +  S       
Sbjct: 56  TFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAFWLE 115

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           ++       T      P +  G +++++    V  GD  + +    +   K LI   G+ 
Sbjct: 116 VEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQV 172

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             L  LN  YP+          + +++ ASQ
Sbjct: 173 F-LQPLNPQYPMIPCN-DSCSVVGKVI-ASQ 200


>gi|148268470|ref|YP_001247413.1| phage repressor [Staphylococcus aureus subsp. aureus JH9]
 gi|150394533|ref|YP_001317208.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257136362|ref|YP_003169636.1| cI repressor-like protein [Staphylococcus phage P954]
 gi|257793283|ref|ZP_05642262.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258419779|ref|ZP_05682742.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719]
 gi|282904658|ref|ZP_06312533.1| putative prophage L54a, repressor protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|295407324|ref|ZP_06817122.1| phage repressor [Staphylococcus aureus A8819]
 gi|297246908|ref|ZP_06930688.1| conserved hypothetical protein [Staphylococcus aureus A8796]
 gi|147741539|gb|ABQ49837.1| putative phage repressor [Staphylococcus aureus subsp. aureus JH9]
 gi|149946985|gb|ABR52921.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
           JH1]
 gi|256681204|gb|ACV04947.1| cI repressor-like protein [Staphylococcus phage P954]
 gi|257787255|gb|EEV25595.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257844190|gb|EEV68576.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719]
 gi|282594907|gb|EFB99883.1| putative prophage L54a, repressor protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|294967769|gb|EFG43800.1| phage repressor [Staphylococcus aureus A8819]
 gi|297176260|gb|EFH35547.1| conserved hypothetical protein [Staphylococcus aureus A8796]
 gi|315128291|gb|EFT84315.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329728105|gb|EGG64548.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus
           21172]
          Length = 238

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 31/236 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++     ++ S L+R+ G+   S +       E +        + K L      + 
Sbjct: 6   DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63

Query: 71  QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGGFFDSGVFP------------ 110
                        +           ++  +L +  +      +                 
Sbjct: 64  GFDISKNRKIENNDITSIYSKLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSE 123

Query: 111 ------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                            E  S       +   D   K    SM PL++ G I+ +  +  
Sbjct: 124 VDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNGQIIFIEKSHT 183

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   +     GD   K +       + L+SLN  Y      +   +  + +++
Sbjct: 184 IKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLYFYDNESVRLVGKVI 237


>gi|330828944|ref|YP_004391896.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas
           veronii B565]
 gi|328804080|gb|AEB49279.1| Prophage MuSo1, transcriptional regulator, Cro/CI family [Aeromonas
           veronii B565]
          Length = 248

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 20/230 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + S     + +D +     L+    A   G+  +   K         N  P+ +   +
Sbjct: 25  MDTLS-----DRLDELRGS--LSYKAFAELVGMSESGMRKYF----PPFNSLPTIDKALR 73

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVG 119
           I    N  +  L             ++      +    +   G+  +     G   +   
Sbjct: 74  IARTFNVNLEWLATGQGPKHPDGAAEQMVQREEFDEEYALIDGYHVTVSTGHGAFNDDHE 133

Query: 120 VPEIRSPHNGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           V    +                     +  SM P    GD ++++ +        + +  
Sbjct: 134 VKRKLAFRRKWLTFRKLNPDNLVVVFAKGDSMEPTIHSGDSILVDISKNQIEDGSIFVLR 193

Query: 176 RTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIE---WIARILWA 221
              ++ AK L       I ++S N   YP+  V  + +E    I +++WA
Sbjct: 194 LGEELYAKRLQKNFDGGITIISDNRDDYPLQVVPANQLENLAVIGKVVWA 243


>gi|253577142|ref|ZP_04854463.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843524|gb|EES71551.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 208

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 62/226 (27%), Gaps = 32/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M+  S   + I E I          PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MSKVSSRQQAILEFIRNEVRAKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGFIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +   +  +L                 +   P          +  T N 
Sbjct: 61  TK--PRAIELLGQEESENYNLF-------------AHSVTRVPIVGKVTAGVPITATENI 105

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +PE        YA             SM       GD +I+      N GD ++ 
Sbjct: 106 EDYFPLPEH-------YAADGDIFMLSVVGDSMIEAGIHNGDYVIVRQQQTANNGDIVVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K         I L   N       ++   +  + +++
Sbjct: 159 MTEDDEATVKTFYKESD-HIRLQPENSTMEPLRLKH--VTILGKVI 201


>gi|71275563|ref|ZP_00651848.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Dixon]
 gi|71900792|ref|ZP_00682912.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Ann-1]
 gi|71163454|gb|EAO13171.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Dixon]
 gi|71729469|gb|EAO31580.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Ann-1]
          Length = 256

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 66/248 (26%), Gaps = 43/248 (17%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        +T   LA    + P S +         + ++   E++ K   A N +  
Sbjct: 5   ERLRFAMLEAGMTQKQLADAVRVKPPSVHGWL----SSKAKFLRGENLLKAAQALNVSEK 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPP---------------------SGSGGFFDSGVF 109
            L          T    +E P    P                      +         + 
Sbjct: 61  WLATGTGPMRAVTANSNQENPSTQGPERTKLDACELRIIDGDEDLDREADVLIDEVDVLL 120

Query: 110 PTGNKWNTVGV-------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
             G+              P   S    ++         +    SM       D +++N A
Sbjct: 121 AAGSGVVIPEFIETKFRMPFPLSWLRDVHISSKDVKLMRVYGDSMERTLFDKDRVLVNLA 180

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD--- 211
                  ++      G+   K L + R  S+ ++S N          Y  + V   +   
Sbjct: 181 DTRIRDGKVYAIAIGGEAKVKRLYTLRNSSLRIVSDNQNKDSEGHRIYKDEIVPSKEMDT 240

Query: 212 IEWIARIL 219
           +  I R++
Sbjct: 241 VHIIGRVI 248


>gi|304379184|ref|ZP_07361927.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|304342230|gb|EFM08126.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
          Length = 238

 Score = 97.9 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 31/236 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++     ++ S L+R+ G+   S +       E +        + K L      + 
Sbjct: 6   DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKIFELAKALNVNEAWLM 63

Query: 71  QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGGFFDSGVFP------------ 110
                        +           ++  +L +  +      +                 
Sbjct: 64  GFDISKNRKIENNDITSIYSKLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSE 123

Query: 111 ------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                            E  S       +   D   K    SM PL++ G I+ +  +  
Sbjct: 124 VDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNGQIIFIEKSHT 183

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   +     GD   K +       + L+SLN  Y      +   +  + +++
Sbjct: 184 IKDGQIGVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLYFYDNESVRLVGKVI 237


>gi|309803435|ref|ZP_07697529.1| peptidase S24-like protein [Lactobacillus iners LactinV 11V1-d]
 gi|325913398|ref|ZP_08175765.1| peptidase S24-like protein [Lactobacillus iners UPII 60-B]
 gi|308164444|gb|EFO66697.1| peptidase S24-like protein [Lactobacillus iners LactinV 11V1-d]
 gi|325477324|gb|EGC80469.1| peptidase S24-like protein [Lactobacillus iners UPII 60-B]
          Length = 222

 Score = 97.9 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 72/229 (31%), Gaps = 20/229 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++++I + ++R+     ++   ++RK  +  +S ++        R R    + + +  
Sbjct: 1   MRNNEEIMQLLERLKADKKMSLREISRKTDIAVSSISRYFN-----RTRDFPLDKLDRFA 55

Query: 63  AATNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDS-------GVFPT 111
            A N +   +L++      TT      ++++  +  +         +        G    
Sbjct: 56  KAFNVSPEYILNVSKPCDITTIYNQLHEKRQAKVYNYAREQLDEQLNEKRSIYVVGTSAA 115

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
           G               +        D     +  SM P      I+  +    +  G+  
Sbjct: 116 GEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGEIG 172

Query: 172 LIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 173 IFEINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFARDQVRILGKVV 221


>gi|15839101|ref|NP_299789.1| hypothetical protein XF2511 [Xylella fastidiosa 9a5c]
 gi|9107714|gb|AAF85309.1|AE004058_10 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 256

 Score = 97.9 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 64/248 (25%), Gaps = 43/248 (17%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        +T   LA    + P S +         + ++   E++ K   A N +  
Sbjct: 5   ERLRFAMLEAGMTQKQLADAVRVKPPSVHGWL----SAKAKFLRGENLLKAAQALNVSEK 60

Query: 71  QLLDLPFSDGRTTEKKEKEIP---------------------LLYFPPSGSGGFFDSGVF 109
            L          T    +E P                         P +         + 
Sbjct: 61  WLATGTGPMRAVTANSNQETPSKQDSKRIKLDACELRVIESDDELDPEADVLLDEIDVML 120

Query: 110 PTGNKWNTVGV-------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
             GN              P   S    ++         +    SM       D +++N A
Sbjct: 121 AAGNGILIPEFVETQFKMPFPISWLRDVHINSKDVKLMRVHGDSMERTLFNKDRVMVNFA 180

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD--- 211
                  ++      G+   K L +     + + S N          +   T+   +   
Sbjct: 181 DTHVRDGKVYAIAIDGEAKVKRLYTLHNNGLRIASDNHARDSEGHRIHEDRTISPKEIGI 240

Query: 212 IEWIARIL 219
           ++ I R++
Sbjct: 241 VQVIGRVI 248


>gi|294631831|ref|ZP_06710391.1| LexA repressor [Streptomyces sp. e14]
 gi|292835164|gb|EFF93513.1| LexA repressor [Streptomyces sp. e14]
          Length = 259

 Score = 97.9 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 57  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 106

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 107 -RDPHRPRAYEVRGSDQAATLQPTDTVGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 165

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 166 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQQVAENGDIVAAMID-GEA 217

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 218 TVKRFKR-EDGHVWLLPHNAAYEPI--PGDDATILGKVV 253


>gi|21224148|ref|NP_629927.1| LexA repressor [Streptomyces coelicolor A3(2)]
 gi|13431608|sp|O69979|LEXA_STRCO RecName: Full=LexA repressor
 gi|2995311|emb|CAA18339.1| SOS regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 234

 Score = 97.9 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 32  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 81

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 82  -RDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 140

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 141 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 192

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 193 TVKRFKR-EDGHVWLLPHNSAYEPI--PGDDATILGKVV 228


>gi|239991243|ref|ZP_04711907.1| LexA repressor [Streptomyces roseosporus NRRL 11379]
          Length = 265

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 54/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 64  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 113

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               T        P   + P          +    +  +   +P
Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 223

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    R    + L+  N  Y        +   + +++
Sbjct: 224 TVKRF-RREDGHVWLLPHNAAYQPI--PGDEATILGKVV 259


>gi|182435510|ref|YP_001823229.1| LexA repressor [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326776147|ref|ZP_08235412.1| SOS-response transcriptional repressor, LexA [Streptomyces cf.
           griseus XylebKG-1]
 gi|178464026|dbj|BAG18546.1| putative SOS regulatory protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326656480|gb|EGE41326.1| SOS-response transcriptional repressor, LexA [Streptomyces cf.
           griseus XylebKG-1]
          Length = 265

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 54/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 64  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 113

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               T        P   + P          +    +  +   +P
Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 223

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    R    + L+  N  Y        +   + +++
Sbjct: 224 TVKRF-RREDGHVWLLPHNAAYQPI--PGDEATILGKVV 259


>gi|172045704|sp|Q2K8X2|LEXA_RHIEC RecName: Full=LexA repressor
          Length = 239

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107
                + K+  A N ++        S                 P        S      G
Sbjct: 61  ARALEVIKLPEAYNPSLQPRRGFSPSVIEGSLGKPQPVAAPAAPKPVADNGNSISVPVMG 120

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
               G   + +                 +    + +  SM+      GD +I+ +    +
Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232


>gi|329769730|ref|ZP_08261131.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325]
 gi|328838092|gb|EGF87710.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325]
          Length = 218

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 20/216 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + ++HN++ + +A   G+  +++N  ++         P+ +++ ++    N    
Sbjct: 5   DRLQALRKKHNISQTAIAEHLGVTRSAYNGWEKGKFI-----PNKKNLEELADYFNVETS 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPP-----SGSGGFFDSGVFPTGNK---WNTVGVPE 122
                     R  +  +     L         S    +        G             
Sbjct: 60  YFESEYEIVNRYLQLNDINKQKLLKVANELYFSQLYKYRVHAKLSAGLGNYYDENYEFDT 119

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           +       Y     D        SM P Y  GD+ ++        G  +       +   
Sbjct: 120 VYFNSEYDY-----DIASWVDGDSMEPKYHNGDVALIKKTGFDYDG-LIYAVVYNEETYI 173

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K         + L+SLN  Y      + ++  +  +
Sbjct: 174 KK-AYIEEDKVRLVSLNDKYDDIIAPIDEVRIVGLV 208


>gi|296535264|ref|ZP_06897472.1| repressor lexA [Roseomonas cervicalis ATCC 49957]
 gi|296264404|gb|EFH10821.1| repressor lexA [Roseomonas cervicalis ATCC 49957]
          Length = 245

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 58/240 (24%), Gaps = 22/240 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----- 55
           M +    ++   IDR       +PS    K  L   S +   R       R         
Sbjct: 1   MLTRKQHELLTFIDRHLRDTGFSPSFEEMKDALKLRSKSGIHRLITALEERGFLRRRAHR 60

Query: 56  ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                     ES+ +  A            P         +      L      +     
Sbjct: 61  ARALEVIRLPESLAQSGALPATAEAPAAAEPPPGFAPNVIRGNFAQNLPGVAHAAAEAGA 120

Query: 106 SG-----VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
                      G     +               Q      +    SM+ +    GD +I+
Sbjct: 121 VQLPLYGRIAAGLPIEALRDQGASVEVPMALLGQGDHYALEVAGDSMIGMGILDGDTVII 180

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                   G  ++      ++  K L  + G SI L + N  Y         ++   R++
Sbjct: 181 RRGDTAENGSVVVALVDENEVTLKRLRRK-GNSIALEAANPQYETRIFGPDRVKVQGRLV 239


>gi|254386106|ref|ZP_05001420.1| LexA repressor [Streptomyces sp. Mg1]
 gi|194344965|gb|EDX25931.1| LexA repressor [Streptomyces sp. Mg1]
          Length = 264

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 53/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 63  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 112

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               +        P   + P          +    +  +   +P
Sbjct: 113 --RDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 170

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 171 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 222

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 223 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 258


>gi|297156722|gb|ADI06434.1| LexA repressor [Streptomyces bingchenggensis BCW-1]
          Length = 267

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 53/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 66  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 115

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               T        P   + P          +    +  +   +P
Sbjct: 116 --RDPHRPRAYEVRGSDQPSTQPADTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 173

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 174 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 225

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 226 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 261


>gi|157159743|ref|YP_001457061.1| P22 repressor protein c2 [Escherichia coli HS]
 gi|253774261|ref|YP_003037092.1| XRE family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260856262|ref|YP_003230153.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
 gi|291283947|ref|YP_003500765.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615]
 gi|157065423|gb|ABV04678.1| P22 repressor protein c2 [Escherichia coli HS]
 gi|194021560|gb|ACF32369.1| repressor protein C2 [Enterobacteria phage DE3]
 gi|253325305|gb|ACT29907.1| transcriptional regulator, XRE family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976933|gb|ACT42603.1| Repressor protein C2 [Escherichia coli BL21(DE3)]
 gi|257754911|dbj|BAI26413.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
 gi|290763820|gb|ADD57781.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615]
 gi|313848585|emb|CBY77813.1| P22 repressor protein c2 [Escherichia coli BL21(DE3)]
 gi|324114861|gb|EGC08828.1| peptidase S24 [Escherichia fergusonii B253]
          Length = 216

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 67/220 (30%), Gaps = 28/220 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    +   +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 7   GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALAKALQCSP 61

Query: 70  C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                 +      +     + +     + +          +       + W         
Sbjct: 62  DYLLKGEDSLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHRRAIDNW--------- 112

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179
             ++              +  SM         +G I++++  ++   G  ++       +
Sbjct: 113 --YDTTVDCSEDSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 170

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 171 ATFKKLVIDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208


>gi|152996492|ref|YP_001341327.1| putative prophage repressor [Marinomonas sp. MWYL1]
 gi|150837416|gb|ABR71392.1| putative prophage repressor [Marinomonas sp. MWYL1]
          Length = 216

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 27/222 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAA--- 64
           I E + +      LT + LA++ G+   S  K +    +GR + P    ++ K L     
Sbjct: 3   IAERVKQKRTDLRLTQAELAKRVGISQQSLQKIE----DGRTQNPRKLLNLAKALDCDAE 58

Query: 65  ---TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                +     E  L     +     + +       K++ +  P
Sbjct: 59  WLLLGTACEVRESASSYTNNNSASTSLETNLRPIITTLQAAQWPNITDLDERKFDWIETP 118

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IKPR 176
           E  S                    SM+        +G +++++ ++    GD ++     
Sbjct: 119 ESTS---------KSAFWLNVVGDSMMSPSGTSVPEGYLILVDPSLTAKNGDLIITKVAD 169

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           + D+  K L+   GR+  L  LN  Y    V  +D+  I  +
Sbjct: 170 SKDVTFKKLVIDAGRTY-LTPLNPNYRPIEVP-NDLTVIGVV 209


>gi|85703699|ref|ZP_01034803.1| phage-related protein [Roseovarius sp. 217]
 gi|85672627|gb|EAQ27484.1| phage-related protein [Roseovarius sp. 217]
          Length = 219

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 64/226 (28%), Gaps = 25/226 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WPSTESIFKILAATN 66
           I   ID   ++   + +  +R A +   S  K+ R   +G  R  W S E + ++L    
Sbjct: 4   ILNQIDEALKKKGYSDAKASRLA-VGHPSLIKNFRMKRDGDKRYNWASLERLAEVLD--- 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIR 124
                             +                          G       V      
Sbjct: 60  ---------LELYFGPPREAGTVYTTQLGHDDFDVILRLDARLAAGAGVENGEVSYEGAL 110

Query: 125 SPHNGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +             +Q    +    SM P+ R  D+++++          +         
Sbjct: 111 AFCRKWLNEHNISPSQACLMRVSGDSMCPMLRDDDVVMIDQRKTTIRNRHVYALVDVDGS 170

Query: 181 -VAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWAS 222
              K +       I L S N  YP +T    +M+ I  +  I+W+S
Sbjct: 171 SRVKRVELVENEMIILSSDNPNYPTETRRGPDMNRIRILGEIVWSS 216


>gi|222032723|emb|CAP75462.1| Repressor protein [Escherichia coli LF82]
          Length = 216

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 26/219 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    +   +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 7   GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALANALKCSP 61

Query: 70  CQLLDLPF----SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             L+            +        PL+ +  +G                N        S
Sbjct: 62  DYLIKGEESLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHK-RAIDNWYDTTVDCS 120

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180
                            +  SM         +G I++++  ++   G  ++       + 
Sbjct: 121 E---------DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEA 171

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 172 TFKKLVIDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208


>gi|329939980|ref|ZP_08289262.1| SOS-response repressor and protease LexA [Streptomyces
           griseoaurantiacus M045]
 gi|329300806|gb|EGG44702.1| SOS-response repressor and protease LexA [Streptomyces
           griseoaurantiacus M045]
          Length = 234

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 32  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 81

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 82  -RDPHRPRAYEVRGSDQAAPVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 140

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 141 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIV-AAMLEGEA 192

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 193 TVKRFKR-EDGHVWLLPHNSAYEPI--PGDDATILGKVV 228


>gi|158334468|ref|YP_001515640.1| S24 family peptidase [Acaryochloris marina MBIC11017]
 gi|158304709|gb|ABW26326.1| peptidase, S24 family [Acaryochloris marina MBIC11017]
          Length = 227

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 10/202 (4%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             + LA+  G++  +  K        RN     E + + L    E +             
Sbjct: 27  NATHLAKVVGVNDRTIRKWMAGTEPARN---YLELLAEKLEVNIEWLVLGRGPIRRVDGG 83

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
                     LY   +G+G    +           +           +       +    
Sbjct: 84  IGDGTYVQIPLYDVRAGAGEGMIAEDK--EQIEELMAFSRSWIRSE-LRTSPAHLSLIHV 140

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P  R GD+++++        D + +  R G +  K L    G+ + ++S N  Y
Sbjct: 141 SGDSMEPTLRPGDVVLVDQHQAEGGTDGVYVLRRDGHLQIKRLHWLSGKVLKIISDNPIY 200

Query: 203 PVDTVEM----SDIEWIARILW 220
               V++     + + I R++W
Sbjct: 201 QPIEVDLSQLTEEFQIIGRVIW 222


>gi|312873589|ref|ZP_07733636.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           2052A-d]
 gi|311090842|gb|EFQ49239.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           2052A-d]
          Length = 228

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 25/224 (11%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT------- 65
           ID    ++NLT   L +K G   +S ++          R+P  E I +I           
Sbjct: 12  IDYFRRQNNLTMEELGQKLGKAKSSISRWVSGE-----RYPKIEEIEQIANFFNTDIYTL 66

Query: 66  --NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-------GVFPTGNKWN 116
                  +                ++  +  +         +        G    G    
Sbjct: 67  IFGFNYNEDSKSDLLTVYNQLTDIRKHKVYSYAQQQLDEQLNDKSSIYVVGTSAAGEPIE 126

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                      +        D     +  SM P      I+  +    +  G+  + +  
Sbjct: 127 YGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGEIGIFEIN 183

Query: 177 TGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +  K        + I L S+N  Y         +  + +++
Sbjct: 184 GSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 227


>gi|239944779|ref|ZP_04696716.1| LexA repressor [Streptomyces roseosporus NRRL 15998]
 gi|291448242|ref|ZP_06587632.1| LexA repressor [Streptomyces roseosporus NRRL 15998]
 gi|291351189|gb|EFE78093.1| LexA repressor [Streptomyces roseosporus NRRL 15998]
          Length = 265

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 54/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 64  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMVLERKGFLR---------- 113

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               T        P   + P          +    +  +   +P
Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 223

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    R    + L+  N  Y        +   + +++
Sbjct: 224 TVKRF-RREDGHVWLLPHNAAYQPI--PGDEATILGKVV 259


>gi|241204519|ref|YP_002975615.1| LexA repressor [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858409|gb|ACS56076.1| SOS-response transcriptional repressor, LexA [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 239

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107
                + K+  A + +I        S                          S      G
Sbjct: 61  ARALEVIKLPEAYSPSIQPRRGFSPSVIEGSLGKPQPVAAPAPAKPVADNGNSVSVPVMG 120

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
               G   + +                 +    + +  SM+      GD +I+ +    +
Sbjct: 121 RIAAGVPISAIQNNTHDIAVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232


>gi|282862307|ref|ZP_06271369.1| SOS-response transcriptional repressor, LexA [Streptomyces sp.
           ACTE]
 gi|282562646|gb|EFB68186.1| SOS-response transcriptional repressor, LexA [Streptomyces sp.
           ACTE]
          Length = 265

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 53/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 64  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 113

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               T        P   + P          +    +  +   +P
Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLD-GEA 223

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 224 TVKRFKR-EDGHVWLLPHNSAYQPI--PGDEATILGKVV 259


>gi|103485728|ref|YP_615289.1| putative phage repressor [Sphingopyxis alaskensis RB2256]
 gi|98975805|gb|ABF51956.1| putative phage repressor [Sphingopyxis alaskensis RB2256]
          Length = 222

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 9/213 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            A+DR+     +  + L++  G +P    +  +    G  R  + +   +I A    +  
Sbjct: 10  AALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKR---GSPRRLAEQDRARIAAYLGVSEA 66

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L             +   + L+    +                   V          G 
Sbjct: 67  MLGGPVARVATPARSRGAGMILVPK-LAIGASAGAGASVDGEPVEGEVAFNPKWLRDLG- 124

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            A     +  + +  SM P    GD ++++ S       D + +      ++ K +    
Sbjct: 125 -ADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAARLRDGIYVLRMDDVLMVKRIARAP 183

Query: 190 G-RSIDLMSLNCCYPVD-TVEMSDIEWIARILW 220
           G   + ++S N  Y     + +S I  + R++W
Sbjct: 184 GPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVW 216


>gi|302537349|ref|ZP_07289691.1| LexA repressor [Streptomyces sp. C]
 gi|302446244|gb|EFL18060.1| LexA repressor [Streptomyces sp. C]
          Length = 263

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 53/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 62  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 111

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               +        P   + P          +    +  +   +P
Sbjct: 112 --RDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 169

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 170 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 221

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 222 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 257


>gi|83942599|ref|ZP_00955060.1| LexA repressor [Sulfitobacter sp. EE-36]
 gi|83953840|ref|ZP_00962561.1| LexA repressor [Sulfitobacter sp. NAS-14.1]
 gi|83841785|gb|EAP80954.1| LexA repressor [Sulfitobacter sp. NAS-14.1]
 gi|83846692|gb|EAP84568.1| LexA repressor [Sulfitobacter sp. EE-36]
          Length = 232

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 66/229 (28%), Gaps = 13/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     +   I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLAFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+  +              DG   +             + S      G    G
Sbjct: 61  ARAIEVVKLPDSLGSLSGAGFTPRVIDGDRPDGPPPSAAQP--VSASSFDVPMMGRIAAG 118

Query: 113 NKWNTVGV-PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                +    +  +   G+ +   +    + Q  SM+      GD++I+      + GD 
Sbjct: 119 VPIEAISTMTQSVAVPGGMISGSGEHYALEVQGDSMIDAGINDGDVVIIRETSVADDGDI 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K      G S+ L + N  Y    +    ++   R++
Sbjct: 179 VVALVEDHEATLKKFRRH-GSSVALEAANPAYETRVLPSDKVKVQGRLV 226


>gi|288556885|ref|YP_003428820.1| LexA repressor [Bacillus pseudofirmus OF4]
 gi|288548045|gb|ADC51928.1| LexA repressor [Bacillus pseudofirmus OF4]
          Length = 207

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 39/229 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51
           M+  S   ++I + I    ++    PS   +    GL  +S      ++ ++ G+    R
Sbjct: 1   MSKLSKRQQEILDYIKIEVKKKGYPPSVREIGEAVGLASSSTVHGHLSRLEKKGLI--RR 58

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            P+     ++L                                + P          +   
Sbjct: 59  DPTKPRAIEVLEM-----------------DELDPVVHEKKTAYVPIVGKVTAGMPITAI 101

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
            N    + +P+    ++ +Y           Q  SM       GD++I+      N GD 
Sbjct: 102 ENVEEYLPLPDHLVTNDSVY-------VLVIQGDSMIEAGIYDGDMVIVRQQQTANNGDI 154

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K     +   I L   N       ++  D+  + +++
Sbjct: 155 IVAMTEENEATVKRFFREKD-YIRLQPENSTMEPILLK--DVTVLGKVI 200


>gi|261492598|ref|ZP_05989151.1| CI repressor [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494900|ref|ZP_05991372.1| CI repressor [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309436|gb|EEY10667.1| CI repressor [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311757|gb|EEY12907.1| CI repressor [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 228

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 64/231 (27%), Gaps = 26/231 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+  S       +  +  + NL+ +  A+  G+   +  K          R P   +I +
Sbjct: 1   MSDLS-----SRLSGLLAQKNLSMNEFAKMVGVTQPAIAKIVNGET----RSPK--NIVE 49

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---- 116
           I  A +  +  L            K  K         S             GN       
Sbjct: 50  IADALDVDVNWLKTGKGEA-PDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNGSFVTGD 108

Query: 117 ------TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                  V             A     +       SM P    GD+L +++      GD 
Sbjct: 109 LTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTTKSAYQGDG 168

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218
           + +     ++  K L    G  + ++S N  Y    +       ++   ++
Sbjct: 169 VYVFSYGENLYVKRLQF-AGDELLVISDNPLYKEWRITSENEHKLQIHGKV 218


>gi|44888100|sp|Q82KE0|LEXA_STRAW RecName: Full=LexA repressor
          Length = 234

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 54/219 (24%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 32  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 81

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +      +                 P   + P          +    +  +   +P
Sbjct: 82  -RDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 140

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 141 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 192

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 193 TVKRFKR-EDGHVWLLPHNSAYQPI--PGDEATILGKVV 228


>gi|15614919|ref|NP_243222.1| LexA repressor [Bacillus halodurans C-125]
 gi|13431641|sp|Q9KAD3|LEXA_BACHD RecName: Full=LexA repressor
 gi|10174976|dbj|BAB06075.1| transcriptional repressor of the SOS regulon [Bacillus halodurans
           C-125]
          Length = 207

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 63/229 (27%), Gaps = 39/229 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51
           M+  S   ++I + I          PS   +    GL  +S      ++ ++ G     R
Sbjct: 1   MSKLSRRQQEILDYIKEEVRAKGYPPSVREIGEAVGLASSSTVHGHLSRLEKKGYI--RR 58

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            P+     ++L                        E       + P          +   
Sbjct: 59  DPTKPRAIEVLD-----------------LENLASETTEAKATYIPVVGKVTAGLPITAV 101

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
            N      +PE  + ++            + Q  SM       GD++I+      + GD 
Sbjct: 102 ENVEEYFPLPEQLTAND-------NTYALRIQGDSMIEAGIFDGDLVIVRQQQTADNGDI 154

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K     +   I L   N       +       + +++
Sbjct: 155 IVAMTEEDEATVKRFFREKD-YIRLQPENSTMEPIILTT--CTILGKVI 200


>gi|254391042|ref|ZP_05006250.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
 gi|13431612|sp|O86847|LEXA_STRCL RecName: Full=LexA repressor
 gi|197704737|gb|EDY50549.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
          Length = 239

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 52/219 (23%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 38  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 87

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                        P   + P          +    +  +   +P
Sbjct: 88  --RDPHRPRAYEVRGSDQPSAQPADTSGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 145

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 146 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 197

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        D   + +++
Sbjct: 198 TVKRFKR-ENGHVWLLPHNAAYQPI--PGDDATILGKVV 233


>gi|303248682|ref|ZP_07334936.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
 gi|302489938|gb|EFL49864.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
          Length = 226

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 12/202 (5%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           + + LA   G+  ++  ++K+     +        +  +   T      L     +    
Sbjct: 30  SQAELAALLGVHRSAVTQAKKKDAVPKA------WVLAVSRRTGADADWLEYGRPAKSAA 83

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
                ++ P +  P   +      G F T  +  +V VP           +         
Sbjct: 84  KNDTAEDGPYIGVPKVRARLSAGGGSFETRGEVESV-VPFRGDWLRRKGNVSG-MVLMDV 141

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P  R GD ++++          +        ++ K +  R   S+ L+S N  Y
Sbjct: 142 VGNSMEPEIRHGDTVLIDQGQTAIVAHGVYAMGVEDTVLVKRVEKRP-GSLVLLSDNRDY 200

Query: 203 PVDTVEMSDI---EWIARILWA 221
               +   +I     I R+LW 
Sbjct: 201 APIVLSGDEIDALRVIGRVLWV 222


>gi|110680397|ref|YP_683404.1| LexA repressor [Roseobacter denitrificans OCh 114]
 gi|123065396|sp|Q163X5|LEXA_ROSDO RecName: Full=LexA repressor
 gi|109456513|gb|ABG32718.1| LexA repressor [Roseobacter denitrificans OCh 114]
          Length = 233

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 64/229 (27%), Gaps = 12/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+                 +G   +             + +      G    G
Sbjct: 61  ARAIEIVKLPETLGGAARGGFTPRVIEGDKPDAPLPAGAQA-VSSADAVALPLVGRIAAG 119

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                +          G   + +      + +  SM+      GD++++      + GD 
Sbjct: 120 LPIEAINQNSASVAVPGQMLSGKGDHYALEVKGDSMIDAGINDGDVVVIRETSVADNGDI 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K  + + G SI L + N  Y         ++   +++
Sbjct: 180 VVALIEDHEATLKRYMRK-GSSIALEAANPAYETRVFTEDKVKVQGKLV 227


>gi|307580165|gb|ADN64134.1| hypothetical protein XFLM_11395 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 246

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 43/240 (17%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
              +T   LA    + P S +         + ++   E++ K   A N +   L      
Sbjct: 3   EAGMTQKQLADAVRVKPPSVHGWL----SSKAKFLRGENLLKAAQALNVSEKWLATGTGP 58

Query: 79  DGRTTEKKEKEIPLLY---------------------FPPSGSGGFFDSGVFPTGNKWNT 117
               T    +E P                         P +         +   GN    
Sbjct: 59  MRAVTANSNQENPSTQGPERTKLDACELRVVESDDDLDPETDVLIDEVDVLLAAGNGVVI 118

Query: 118 VGV-------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                     P   S    ++         +    SM       D +++N A       +
Sbjct: 119 PEFIETKFRMPFPLSWLRDVHISSKDMKLMRVYGDSMERTLFDKDRVLVNLADTRIRDGK 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD---IEWIARIL 219
           +      G+   K L + R   + ++S N          Y  +TV   +   +  I R++
Sbjct: 179 VYAIAIGGEAKIKRLYTLRNNGLRIVSDNQNKDSEGHRIYKDETVPPKEMDTVHIIGRVI 238


>gi|239908033|ref|YP_002954774.1| hypothetical protein DMR_33970 [Desulfovibrio magneticus RS-1]
 gi|239797899|dbj|BAH76888.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 235

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 11/216 (5%)

Query: 14  DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR----NRWPSTESIFKILAATNET 68
           +R A+   L + + LA   G+  ++  ++KR     +         T +    L      
Sbjct: 19  ERAAKAAGLASQAELAALLGVHRSAVTQAKRKEAVPKAWVLTVSRRTGADPDWLEYGRRR 78

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                                      P   +      G F TG +   V  P  +    
Sbjct: 79  SGAGRGDGRGSAADDGAAVAAEIFAAVPKVRARLSAGGGSFETGGEVERV-YPFRQDWLR 137

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 ++         SM P  R GD+++++          +        ++ K +  R
Sbjct: 138 -AKGQPSRMVLMDVVGNSMEPEIRHGDMVLIDQGQTAVVAHGVYAVGLEDTVLVKRVEKR 196

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEW---IARILWA 221
            G+ + L+S N  Y    +   +++    I R+LW 
Sbjct: 197 PGQ-LVLLSDNRDYAPIVLAGDELDALRFIGRVLWV 231


>gi|146279124|ref|YP_001169283.1| LexA repressor [Rhodobacter sphaeroides ATCC 17025]
 gi|166224643|sp|A4WX64|LEXA_RHOS5 RecName: Full=LexA repressor
 gi|145557365|gb|ABP71978.1| SOS-response transcriptional repressor, LexA [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 228

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 63/223 (28%), Gaps = 5/223 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++ + I    +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQMELLDFIKTRMDRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + +                     ++ E          + +      G    G     +
Sbjct: 61  ARAIEIVKLPEAMERAGFAPRVIEGDRTEPPRGARPVETANALDLPLMGRIAAGLPIEAI 120

Query: 119 -GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
               +  +  + + + + Q    + +  SM       GDI+++      + GD ++    
Sbjct: 121 TDGAQSVTVPSMMLSGRGQHYALEVRGDSMIEAGINDGDIVVIREQQTADNGDIVVALVA 180

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K    R G  I L   N  Y         ++   R++
Sbjct: 181 DHEATLKRFRRR-GGMIALEPANASYETQVYPDHMVKVQGRLV 222


>gi|239982724|ref|ZP_04705248.1| LexA repressor [Streptomyces albus J1074]
 gi|291454573|ref|ZP_06593963.1| LexA repressor [Streptomyces albus J1074]
 gi|291357522|gb|EFE84424.1| LexA repressor [Streptomyces albus J1074]
          Length = 261

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 52/219 (23%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 60  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 109

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                        P   + P          +    +  +   +P
Sbjct: 110 --RDPHRPRAYEVRGSDQPSAQPADTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 167

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 168 RQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEA 219

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         I L+  N  Y        +   + +++
Sbjct: 220 TVKRFKR-EDNHIWLLPHNAAYQPI--PGDEATILGKVV 255


>gi|196233812|ref|ZP_03132651.1| putative phage repressor [Chthoniobacter flavus Ellin428]
 gi|196222174|gb|EDY16705.1| putative phage repressor [Chthoniobacter flavus Ellin428]
          Length = 311

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 4/207 (1%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +     R  L+   LA+  G               GR      E I ++L     T  +L
Sbjct: 100 LREALRRRELSAGQLAKLIGYKAPIVENVVHGT--GRISESMAEKIEEVLDH-EITKEEL 156

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           +    +         +    +     G            G+  N     E          
Sbjct: 157 MAGSETPITLDPTGFRGTMGMKPSTPGMRKVPLISWAAAGSLHNASAFDEDYDGEAIETN 216

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-SRRGR 191
           +  +    K +  SM P    GDI ++ S I+   G  +L++   GD+  K        R
Sbjct: 217 VPGRVFSVKIEGDSMYPEINPGDIAVVRSDIEPRPGQVVLVRTLDGDVWCKRYSTRDGNR 276

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARI 218
            + L S+N  Y    +    I WI  +
Sbjct: 277 FVVLSSINDTYRPFEISAESIAWIYPV 303


>gi|116251992|ref|YP_767830.1| LexA repressor [Rhizobium leguminosarum bv. viciae 3841]
 gi|122988547|sp|Q1MH39|LEXA_RHIL3 RecName: Full=LexA repressor
 gi|115256640|emb|CAK07728.1| putative LexA repressor (SOS regulatory protein) [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 239

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+  A + +I        S    +  K + +       S +       V   G
Sbjct: 61  ARALEVIKLPEAYSPSIQPRRGFSPSVIEGSLGKPQPVATPAPAKSVADNGNSVSVPVMG 120

Query: 113 NKWNTVGVPEIRSPHNGIYAI-----QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
                V +  I++  + I          +    + +  SM+      GD +I+ +    +
Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232


>gi|15965363|ref|NP_385716.1| LexA repressor [Sinorhizobium meliloti 1021]
 gi|307312740|ref|ZP_07592371.1| transcriptional repressor, LexA family [Sinorhizobium meliloti
           BL225C]
 gi|307317224|ref|ZP_07596665.1| transcriptional repressor, LexA family [Sinorhizobium meliloti
           AK83]
 gi|25453100|sp|Q92PW3|LEXA_RHIME RecName: Full=LexA repressor
 gi|15074543|emb|CAC46189.1| Putative LexA repressor transcription regulator [Sinorhizobium
           meliloti 1021]
 gi|306897312|gb|EFN28057.1| transcriptional repressor, LexA family [Sinorhizobium meliloti
           AK83]
 gi|306899465|gb|EFN30097.1| transcriptional repressor, LexA family [Sinorhizobium meliloti
           BL225C]
          Length = 238

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                + K+      A+         +                      + S      G 
Sbjct: 61  ARALEVIKLPEAYAGASQVRRGFSPSVIEGSLGKPAAPPPAPKPAPPAEAASVAVPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G   + +                 +    + +  SM       GD +I+ +    + 
Sbjct: 121 IAAGVPISAIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDTVIIRNGSTASP 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K    +   SI L + N  Y         ++   R++
Sbjct: 181 GDIVVALIDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGRLV 231


>gi|226366183|ref|YP_002783966.1| LexA repressor [Rhodococcus opacus B4]
 gi|226244673|dbj|BAH55021.1| LexA repressor [Rhodococcus opacus B4]
          Length = 243

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 20/223 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRW----PSTES 57
            +++ E I          PS   +    GL  TS   ++ +    +G  R     P    
Sbjct: 26  QRRVLEVIRTSVNERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDPNRPRAVD 85

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +                     +      +P   F P          +       + 
Sbjct: 86  VRGLDEVAAGAAANAGAAVGLAAVKSGTDSAPLPEPTFVPVLGRIAAGGPILAEEAVEDV 145

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P            Q      K    SM+      GD +++      + GD +     
Sbjct: 146 FPLPRELVG-------QGSLFLLKVVGESMIDAAICDGDWVVVRQQNVADNGDIVAAMID 198

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K         + LM  N  +       +D   + +++
Sbjct: 199 -GEATVKTFKR-TDSEVWLMPHNPLFDPI--PGNDAAILGKVV 237


>gi|323156532|gb|EFZ42685.1| repressor protein C2 [Escherichia coli EPECa14]
          Length = 211

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 67/220 (30%), Gaps = 28/220 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    +   +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 2   GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALAKALQCSP 56

Query: 70  C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                 +      +     + +     + +          +       + W         
Sbjct: 57  DYLLKGEDSLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHRRAIDNW--------- 107

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179
             ++              +  SM         +G I++++  ++   G  ++       +
Sbjct: 108 --YDTTVDCSEDSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 165

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 166 ATFKKLVIDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 203


>gi|255264421|ref|ZP_05343763.1| LexA repressor [Thalassiobium sp. R2A62]
 gi|255106756|gb|EET49430.1| LexA repressor [Thalassiobium sp. R2A62]
          Length = 232

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 58/227 (25%), Gaps = 9/227 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------S 54
           M +     + E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             +I  +                                    + +      G    G  
Sbjct: 61  ARAIEIVKLPDAMADNGPRGFTPQVIEGDRPDSTPHDARPVETTHAIELPVMGKIAAGVP 120

Query: 115 WNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
              +          G   A   +    + +  SM+      GD++++      + GD ++
Sbjct: 121 IEAISHAAHSVAVPGGMVAGTCEHYALEVKGDSMIDAGINDGDVVVIKETSTADNGDIVV 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K        SI L + N  Y         ++   R++
Sbjct: 181 ALVEDQEATLKRFRRNGA-SIALEAANPAYETRVFNDDQVKVQGRLV 226


>gi|227822058|ref|YP_002826029.1| LexA repressor [Sinorhizobium fredii NGR234]
 gi|227341058|gb|ACP25276.1| LexA repressor [Sinorhizobium fredii NGR234]
          Length = 254

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 66/230 (28%), Gaps = 12/230 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 19  MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 78

Query: 53  PSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                + K+    +      +       +G   +      P+     + S      G   
Sbjct: 79  ARALEVIKLPEAYSAPSQPRRGFSPSVIEGSLGKPPAAPKPVPAPAENTSMTVPVMGRIA 138

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGD 169
            G   + +                 +    + +  SM       GD +I+ +A   + GD
Sbjct: 139 AGVPISAIQNNTHEISVPVEMIGNGEHYALEIKGDSMIEAGILDGDTVIIRNANTASPGD 198

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 199 IVVALIDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGKLV 247


>gi|237750719|ref|ZP_04581199.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373809|gb|EEO24200.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 243

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 65/244 (26%), Gaps = 41/244 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+   I    E   LT + L + +G+   S    +           + +++ KI  A + 
Sbjct: 2   KLGLKIKTAREEKGLTQNDLVKISGVSRASLQLYEADKGN-----ITLDNLEKIANALDY 56

Query: 68  TICQL-----LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF------------------- 103
            +        +              ++        +    F                   
Sbjct: 57  EVVHFLSSNVVPQSKKTCPPICPSIEKNMSPNMSLNNICEFIENDSPLPPTQSNNSVRIP 116

Query: 104 -FDSGVFPTGNKWN-------TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
            +D      G  +         + + +               +    +  SMLP   +  
Sbjct: 117 VYDEVYASAGQGFINDEHITQHIELDKGFLRSYFGLTSFLDLSIITARGDSMLPAVPENC 176

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
            +I+        G   + +    ++  K L  R      L+S N  Y    +E  + E +
Sbjct: 177 QIIVQKG-TPREGQICVTRID-DELYVKRLQKRP--KYKLISDNKSYDDIELEGENYEIL 232

Query: 216 ARIL 219
             ++
Sbjct: 233 GIVV 236


>gi|111023746|ref|YP_706718.1| LexA repressor [Rhodococcus jostii RHA1]
 gi|110823276|gb|ABG98560.1| repressor LexA [Rhodococcus jostii RHA1]
          Length = 243

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 20/223 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRW----PSTES 57
            +++ E I          PS   +    GL  TS   ++ +    +G  R     P    
Sbjct: 26  QRRVLEVIRTSVNERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDPNRPRAVD 85

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +                     +      +P   F P          +       + 
Sbjct: 86  VRGLDEVAAGAAANASAAVGLAAVKSGADGAPLPEPTFVPVLGRIAAGGPILAEEAVEDV 145

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P            Q      K    SM+      GD +++        GD +     
Sbjct: 146 FPLPRELVG-------QGSLFLLKVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID 198

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K         + LM  N  +       +D   + +++
Sbjct: 199 -GEATVKTFKRTENE-VWLMPHNPLFDPI--PGNDAVILGKVV 237


>gi|260853764|ref|YP_003227655.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
 gi|293403667|ref|ZP_06647758.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298379279|ref|ZP_06989160.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300903179|ref|ZP_07121111.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300929088|ref|ZP_07144582.1| peptidase S24-like domain protein [Escherichia coli MS 187-1]
 gi|301019699|ref|ZP_07183852.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
 gi|301301704|ref|ZP_07207839.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|257752413|dbj|BAI23915.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
 gi|291429520|gb|EFF02540.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298280392|gb|EFI21896.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|299882087|gb|EFI90298.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
 gi|300404794|gb|EFJ88332.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300462961|gb|EFK26454.1| peptidase S24-like domain protein [Escherichia coli MS 187-1]
 gi|300843201|gb|EFK70961.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|315252878|gb|EFU32846.1| peptidase S24-like domain protein [Escherichia coli MS 85-1]
 gi|323965045|gb|EGB60506.1| peptidase S24 [Escherichia coli M863]
          Length = 229

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        LT   L    G+   +  K +            T  I +I  A      
Sbjct: 7   ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +   +T +  +                       G         E+       
Sbjct: 61  WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 117

Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +                    +  SM      GD+L ++  ++   GD +          
Sbjct: 118 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 177

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
            K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 178 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 218


>gi|88706898|ref|ZP_01104597.1| Peptidase S24-like protein [Congregibacter litoralis KT71]
 gi|88698820|gb|EAQ95940.1| Peptidase S24-like protein [Congregibacter litoralis KT71]
          Length = 222

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 13/224 (5%)

Query: 1   MTSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTES 57
           MT   H  I  + ++ +      +   LAR AG + +  ++ +      +G  R    + 
Sbjct: 1   MT-RKHIPIRLKNLEALIREAG-SAVRLARAAGTNSSYLSQVRNQLPTKKGTPRAIGDDL 58

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K+ AA N+    + +        T              S         V    +    
Sbjct: 59  ASKLEAAMNKPPGWMDEEH-----PTGPDLTAERDESNTGSQHRLIPWDQVGKGHDISED 113

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PR 176
           +  P   +          +    + +  SM P +R+G+++ ++    V  G  ++++   
Sbjct: 114 LPPPYGTTLLRCPVECSPETFVLRVRGASMEPKFREGELIFVDPQAPVEHGKFVVVRLEE 173

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           + ++  K LI   G+   L +LN  +P   +E++ D      I+
Sbjct: 174 SNEVTFKQLILEEGKKY-LKTLNPDWPNRIIEVNPDTPICGVII 216


>gi|85708726|ref|ZP_01039792.1| LexA repressor [Erythrobacter sp. NAP1]
 gi|85690260|gb|EAQ30263.1| LexA repressor [Erythrobacter sp. NAP1]
          Length = 234

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 57/227 (25%), Gaps = 12/227 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--R 51
           M +    ++   I +  E   ++PS   +     L   S      +  +  G   R   R
Sbjct: 1   MLTAKQHELIRFIQQRLEETGISPSFEEMKEALDLKSKSGVHRLISALEERGFIRRLPNR 60

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             + E I     A      Q      +           +     P +        G    
Sbjct: 61  ARALEVIKVPEDAVTSPRSQAAPAALAANEAVASASSVMARAPEPANDVIEIPLHGRIAA 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
           G     +   +   P         +    +    SM       GD  ++        G+ 
Sbjct: 121 GAPIEALE-GQNSLPVPAALLGPGEHYALEVSGDSMIEAGIFDGDFALVRRTNTARDGEI 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           ++   R  +   K L       + L   N  Y        ++E   +
Sbjct: 180 VVALVRGEEATLKYLHKEGA-MVRLDPANATYDAQVYGPDEVEVQGK 225


>gi|256375571|ref|YP_003099231.1| SOS-response transcriptional repressor, LexA [Actinosynnema mirum
           DSM 43827]
 gi|255919874|gb|ACU35385.1| SOS-response transcriptional repressor, LexA [Actinosynnema mirum
           DSM 43827]
          Length = 235

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 63/223 (28%), Gaps = 31/223 (13%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTES 57
           +   +K+ + I    +R    PS   +    GL  TS    +   +E +    R P+   
Sbjct: 32  TLRQRKVLDVIRDWVDRFGYPPSVREIGEAVGLTSTSSVAHQLRALERKGFLRRDPNRPR 91

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
              +L                    T       P   + P          +    +  + 
Sbjct: 92  AVGVL---------------PAEIVTGLDPAAKPTPAYVPMLGRIAAGGPILAEQSIEDV 136

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P            + +    K    SM+      GD +++      + G+ ++    
Sbjct: 137 FPLPREIVG-------EGEVFLLKVVGDSMVDAAITDGDWVVVRQQPTADNGE-VVAAMI 188

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K    +    + L+  N  Y        +   + +++
Sbjct: 189 EGEATVKTFKRKDDGHVWLLPQNPAYQPIF--GDEATILGKVV 229


>gi|218289122|ref|ZP_03493358.1| transcriptional repressor, LexA family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240705|gb|EED07884.1| transcriptional repressor, LexA family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 202

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 38/226 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M+  + ++  I E I +        PS   +    GL   ++ +   +R   +G  R   
Sbjct: 1   MSGLTARQRAILEFIRKNIREKGYPPSVREIGEAVGLASSSTVHGHLERLQQKGYLR--- 57

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                                       T+ +  E+ +    P         G    G  
Sbjct: 58  -------------------------RDPTKPRALELLVDDEEPGDVVLAPIVGRVTAGLP 92

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            + +   E   P     A   +    +    SM+      GD+ I+      + GD ++ 
Sbjct: 93  ISALEDIEGYLPLPRDVAKGDEVFALRVVGESMINAGILDGDLAIVRRQTSADNGDIVVA 152

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K         + L   N   P        +  + +++
Sbjct: 153 MTDEDEATIKRFYR-EDGRVRLQPENDDMPPLYFPN--VTILGKVI 195


>gi|154248291|ref|YP_001419249.1| LexA repressor [Xanthobacter autotrophicus Py2]
 gi|229470196|sp|A7INJ8|LEXA_XANP2 RecName: Full=LexA repressor
 gi|154162376|gb|ABS69592.1| SOS-response transcriptional repressor, LexA [Xanthobacter
           autotrophicus Py2]
          Length = 237

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 56/232 (24%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +     +   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQYDLLRFIHERLKETGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAA----------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
            + L                         S    +  K +                  G 
Sbjct: 61  ARALEVVRLPDSVAPGLATPRSASRGFSPSVIEGSLGKVRPAADDDEGAGQVVTVPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G+  + +                 +    + +  SM       GD +++      + 
Sbjct: 121 IAAGSPISAIQTRSHTLNIPPEMLGSGEHFALEVRGDSMIEAGILDGDTVLIRKCDTADT 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K L  +   SI L + N  Y         +    R++
Sbjct: 181 GDIIVALVDDEEATLKRLRKKGA-SIALEAANPAYETRIFGPDRVRIQGRLI 231


>gi|331657741|ref|ZP_08358703.1| repressor protein C2 [Escherichia coli TA206]
 gi|315299798|gb|EFU59038.1| peptidase S24-like domain protein [Escherichia coli MS 16-3]
 gi|331055989|gb|EGI27998.1| repressor protein C2 [Escherichia coli TA206]
          Length = 216

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 26/219 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    +   +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 7   GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALAKALQCSP 61

Query: 70  C----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                    L      +        PL+ +  +G                N        S
Sbjct: 62  DYLLKGEDSLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHK-RAIDNWYDTTVDCS 120

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180
                            +  SM         +G I++++  ++   G  ++       + 
Sbjct: 121 E---------DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEA 171

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 172 TFKKLVIDAGRRF-LKPLNPQYPMIEINGN-CKIIGVVV 208


>gi|319957707|ref|YP_004168970.1| phage repressor [Nitratifractor salsuginis DSM 16511]
 gi|319420111|gb|ADV47221.1| putative phage repressor [Nitratifractor salsuginis DSM 16511]
          Length = 218

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 9/195 (4%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
             +A + G+   +F   K+ G       P  E +               D P        
Sbjct: 27  KDVAAELGIGQATFATMKKRGSI-----PYKEIMEFCARRKISINWLFFDQPAEMLVEET 81

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
            K   +       + +GG  D         +  + V      +               + 
Sbjct: 82  GKFFRVRYFADIRASAGGGADVFN----ENYEYIDVDRTLMENLVGAYPSKGIEAIHVEG 137

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P    G I+ ++        D + +      +  K +  R    ++L+S N  Y  
Sbjct: 138 ESMEPTLPDGSIVFIDREQTDPSKDGIFVAATGNGLFIKRIRRRADGMVELISDNPLYTP 197

Query: 205 DTVEMSDIEWIARIL 219
           + +    +E + R++
Sbjct: 198 EVLSPDQVEIVGRVV 212


>gi|262372962|ref|ZP_06066241.1| LexA repressor [Acinetobacter junii SH205]
 gi|262312987|gb|EEY94072.1| LexA repressor [Acinetobacter junii SH205]
          Length = 224

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 70/223 (31%), Gaps = 24/223 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +       + +  + +   +T   LA+K+G+  +  +  +    +      ST SI +
Sbjct: 5   MATL-----GDNLKSIRKAKKMTQKELAQKSGVKQSVISDLETGNAK------STGSILE 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   T  +L     S             +       +G           N    +  
Sbjct: 54  LANALGVTAEELKKGVISTLDNNVAPVSSKLIPVLSWVQAGTMTSVEAIDPKNINEWLP- 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRLLIKPRT 177
                               +    S  P Y  GD +++N +     +   D ++++  +
Sbjct: 113 -------PLSVDDPDGCFYLRVVGVSNYPTYADGDYILVNPSYQVCDLISEDLVVVRSNS 165

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
                K L+        L +LN  +  + +E  + +E +  ++
Sbjct: 166 D-ATFKKLVIESDERKYLQALNPNFQPNIIEFEEGMELVGLVI 207


>gi|146329855|ref|YP_001209677.1| regulatory protein RegA2 [Dichelobacter nodosus VCS1703A]
 gi|146233325|gb|ABQ14303.1| regulatory protein RegA2 [Dichelobacter nodosus VCS1703A]
          Length = 305

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 19/227 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + E +NL+   LA K G    +  K +        R    + +   L  ++  
Sbjct: 76  LASNVKILRELNNLSQDQLAEKIGKSQAAIQKIEAGLT---LRPRFLQDLANALGVSSID 132

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------GFFDSGVFPTGNK----- 114
           +           +  E     +       S             FF    F  G       
Sbjct: 133 LEYKDFEKELKKQAIESDIGTMGKFRLWSSNDPLPEDEYAYLPFFKDVEFQGGTGCCEMQ 192

Query: 115 -WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
            +N   +P  +S  +       Q         SM P+  KG  L +N A  V     +  
Sbjct: 193 DYNGFRLPFAKSTLHRYGVPLDQAFCVTLTGNSMEPVIPKGSTLGINKADTVLKEGDIYA 252

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARIL 219
             +      K L       I + S N   Y  + V   +IE I R+ 
Sbjct: 253 IRQDDLFRVKRLYHAPNGMIRISSFNQEEYKDELVRPENIEIIGRVF 299


>gi|146328782|ref|YP_001209185.1| regulatory protein RegA1 [Dichelobacter nodosus VCS1703A]
 gi|1628367|emb|CAA67160.1| regulatory protein [Dichelobacter nodosus]
 gi|146232252|gb|ABQ13230.1| regulatory protein RegA1 [Dichelobacter nodosus VCS1703A]
          Length = 232

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 19/227 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + E +NL+   LA K G    +  K +        R    + +   L  ++  
Sbjct: 3   LASNVKILRELNNLSQDQLAEKIGKSQAAIQKIEAGLT---LRPRFLQDLANALGVSSID 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------GFFDSGVFPTGNK----- 114
           +           +  E     +       S             FF    F  G       
Sbjct: 60  LEYKDFEKELKKQAIESDIGTMGKFRLWSSNDPLPEDEYAYLPFFKDVEFQGGTGCCEMQ 119

Query: 115 -WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
            +N   +P  +S  +       Q         SM P+  KG  L +N A  V     +  
Sbjct: 120 DYNGFRLPFAKSTLHRYGVPLDQAFCVTLTGNSMEPVIPKGSTLGINKADTVLKEGDIYA 179

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARIL 219
             +      K L       I + S N   Y  + V   +IE I R+ 
Sbjct: 180 IRQDDLFRVKRLYHAPNGMIRISSFNQEEYKDELVRPENIEIIGRVF 226


>gi|320008142|gb|ADW02992.1| transcriptional repressor, LexA family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 265

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 54/219 (24%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 64  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 113

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               T +      P   + P          +    +  +   +P
Sbjct: 114 --RDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLP 171

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K    SM       GD + +        GD +      G+ 
Sbjct: 172 RQLVG-------DGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLD-GEA 223

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  Y        +   + +++
Sbjct: 224 TVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 259


>gi|315929228|gb|EFV08447.1| helix-turn-helix family protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 236

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 31/231 (13%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    E    T + L+ K+G+  ++  K +   ++      +  ++ KI +A N +   
Sbjct: 6   RMKEYREYFGWTQTDLSEKSGVSISTIKKYEAGSVD----NFTYGNLKKIASAFNLSPAS 61

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFP----------------PSGSGGFFDSGVFPTGNKW 115
            +    SD   T   +     +                      +  FF++     G+  
Sbjct: 62  FISENMSDNSPTISNKICPTNVKNCPTSNVILENFTQTLNDDMINIPFFENVRASAGSGA 121

Query: 116 NTVGVPEIRSPHNGIYAIQT-------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
                       +  +  +          +    Q  SM P   +   L++        G
Sbjct: 122 YNDEESTQALGLSKSFLRECFGLYSFINLSVILGQGDSMTPTLPENCYLLIQQGEVAE-G 180

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +  + +    ++  K L  R    + L+S N  Y    +E  + E + R++
Sbjct: 181 EICVTRI-EDELYVKRLQKRP--KLKLLSDNKAYEPINLEGENFEILGRVV 228


>gi|311105237|ref|YP_003978090.1| hypothetical protein AXYL_02046 [Achromobacter xylosoxidans A8]
 gi|310759926|gb|ADP15375.1| helix-turn-helix family protein 5 [Achromobacter xylosoxidans A8]
          Length = 245

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 72/221 (32%), Gaps = 25/221 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I +  +    T   LA + G D  + ++ +R       +  S E + KI AA    
Sbjct: 31  LGDNIRQRRKALGWTILDLANRIGSDVGNVSRLERG-----KQGYSDEILAKIAAALGCP 85

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L      +            +       +G              + V          
Sbjct: 86  VGELFLGVEKESNVELTALGSRRIPVLSYVQAGALT----------ESVVPYTNPDDWLL 135

Query: 129 GIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
               +       + +  SM        + +GD+++++ +++   GD ++ K    +   K
Sbjct: 136 TDLDLSRSAFALRIKGLSMYSPQSEESFNEGDLVVIDPSVEPLPGDFVVAKNGDHEATFK 195

Query: 184 VLISRRGRS-----IDLMSLNCCYPVDTVEMSDIEWIARIL 219
               R          +L+ LN  YP    + + ++ I  ++
Sbjct: 196 KYRPRGVNEKGVVVFELVPLNPDYPSVRSDYTQVQIIGTMV 236


>gi|330836793|ref|YP_004411434.1| putative phage repressor [Spirochaeta coccoides DSM 17374]
 gi|329748696|gb|AEC02052.1| putative phage repressor [Spirochaeta coccoides DSM 17374]
          Length = 232

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN-------RWPSTESIFKI 61
           + + + +      L+   LA++ GL  +++ K +  G            R  +   +   
Sbjct: 2   VGDRLKQARNEMRLSQMQLAKELGLAQSTYAKYELGGAIPEPVMQFLAQRQFNLHWLITG 61

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-- 119
             +          L      T    + +   +            +     G     +   
Sbjct: 62  QGSMYLDGSGTDTLEPIAASTFITPKGKTYAVTIAEGVVSVPILTQRVSAGPGQEFLPAD 121

Query: 120 VPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           + E R P    +     +      + +  SM    +  D  ++    +   GD + +   
Sbjct: 122 ITEERLPVLERFVRMYPKESLFAAEVRGDSMT-GIQLFDADLVIFVREQVEGDGIYVLSV 180

Query: 177 TGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220
            G++  K +      + + + S N  Y    VE   +E + +++ W
Sbjct: 181 DGEVFVKRVEFDPFDKKLTIRSENERYAPREVEADRVELLGKVVGW 226


>gi|306844008|ref|ZP_07476603.1| LexA repressor [Brucella sp. BO1]
 gi|306275763|gb|EFM57487.1| LexA repressor [Brucella sp. BO1]
          Length = 240

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDG-------------RTTEKKEKEIPLLYFPPSGSGGFFD 105
            + L            L                     +               +     
Sbjct: 61  ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVAPVQPVRPAPAPQNSEAPATVSVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
            G    G   + +                 +    + +  SM+      GD +I+     
Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N G+ ++      +   K    +   SI L + N  Y         +    +++
Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234


>gi|222148888|ref|YP_002549845.1| LexA repressor [Agrobacterium vitis S4]
 gi|254809084|sp|B9JX59|LEXA_AGRVS RecName: Full=LexA repressor
 gi|221735874|gb|ACM36837.1| LexA repressor [Agrobacterium vitis S4]
          Length = 239

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 65/233 (27%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +   +++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILA--ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------GFFDSG 107
            + L      E +   +    +    +  +     L   P + +               G
Sbjct: 61  ARALEVIKLPEAMTSSIPPRRTGFSPSVIEGSRGKLQAVPSAPAKQVEEVRNSSSIPVMG 120

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166
               G   + +                 +    + +  SM       GD +I+ +A   N
Sbjct: 121 RIAAGVPISAIQNNTHDISVPMEMLGSGEHYALEVKGDSMIEAGILDGDTVIIRNATTAN 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K    R   SI L + N  Y         ++   +++
Sbjct: 181 PGDIVVALVDDEEATLKRFRRRGA-SIALEAANPAYETRIFGPDRVKIQGKLV 232


>gi|145641568|ref|ZP_01797145.1| predicted transcriptional regulator [Haemophilus influenzae R3021]
 gi|145273615|gb|EDK13484.1| predicted transcriptional regulator [Haemophilus influenzae
           22.4-21]
          Length = 231

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 11/227 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-- 64
             + E +  + ++       LA  AG    + +       +            KI     
Sbjct: 2   NTLAERLQLVMDKMGKNQVELAALAGTSQVTISNILNGVTKSPRNGLQIAKALKISPEWL 61

Query: 65  -TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WN 116
                      +  +   T      +             F+       GN        +N
Sbjct: 62  LNGTGEMAQTQIESNVAETGSFDLWDRNTPLNDDEVEVPFYKDIRLAAGNGFADDIADYN 121

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
              +   +S                    SM P+   G  + ++   +     ++     
Sbjct: 122 NFKLRFSKSTLRKQGVQYENAVCVTADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINH 181

Query: 177 TGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222
            G +  K+L +     + + S N   +P +T ++ DI  + ++ W S
Sbjct: 182 GGLLRIKLLYNMPNEQVKIRSYNSEEHPDETADLKDISVLGKVFWYS 228


>gi|159044352|ref|YP_001533146.1| LexA repressor [Dinoroseobacter shibae DFL 12]
 gi|189046535|sp|A8LMK0|LEXA_DINSH RecName: Full=LexA repressor
 gi|157912112|gb|ABV93545.1| lexA repressor [Dinoroseobacter shibae DFL 12]
          Length = 231

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 14/229 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--------W 52
           M +    ++ E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQIELLEFIHKRLQRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHK 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  A   ++         DG   +     +P+       +      G    G
Sbjct: 61  ARAIEIVKLPEALMGSMQGGFAPQVIDGDRLDPPVGAMPV---SGIHAVELPVMGKIAAG 117

Query: 113 NKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                +          G    Q  +    + +  SM+      GDI+++        GD 
Sbjct: 118 TPIEAISEVSHTVAVPGQMMRQDAEHYALEVKGDSMINAGINNGDIVVIRETSVAESGDI 177

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K L  +RG +I L + N  Y         +    +++
Sbjct: 178 VVALVDGHEATLKTL-RKRGNAIALEAANPAYETRVYPAEMVRVQGKLV 225


>gi|312195032|ref|YP_004015093.1| LexA family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226368|gb|ADP79223.1| transcriptional repressor, LexA family [Frankia sp. EuI1c]
          Length = 278

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 60/234 (25%), Gaps = 23/234 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            +K+ E I    ER    PS   +    GL  TS    +   +E +    R P+     +
Sbjct: 42  QRKVLEVIRDAVERRGYPPSVREIGEAVGLTSTSSVAHQLKMLEDKGFLRRDPNRPRAIE 101

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG------------- 107
           ++ +  E   + L     D    + +                  D               
Sbjct: 102 VVTSEGEAPIRPLPKTRPDLAAGKGRTPLRVHTLGSDDDVRADDDENAQLTAATAYLPLV 161

Query: 108 -VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
                G         E   P       +      +    SM+      GD++ +      
Sbjct: 162 GRIAAGGPILAEQAVEDVLPLPREIVGEGTLFLLRVVGESMINAAICDGDLVAVRQQPVA 221

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+ +      G+   K         + L   N  +        D   + R++
Sbjct: 222 ENGEIVAAMID-GEATVKRFRRHDDGHVWLQPENPAFHDI--AGDDATILGRVV 272


>gi|78357023|ref|YP_388472.1| transcriptional regulator [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219428|gb|ABB38777.1| transcriptional regulator, putative [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 219

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 23/230 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S    +  +    E +  T   LAR  G++ ++ +++K+              + K
Sbjct: 1   MEKLSFDTFFRRVKESTEIN--TQQALARALGVNRSAVSQAKQREKVPEK------WVLK 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I      +   L     S         +                       G     VG 
Sbjct: 53  IARMFALSPDWLESGSGSH------ALRTAASDMADGIFIPVPKVEAKLSAGGGSLEVGA 106

Query: 121 PEI-----RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
                    S                    SM P    GD ++++   Q      +    
Sbjct: 107 TATGEHLFHSTWLRRKGNPADMVLMDVVGDSMEPEIFAGDTVLVDQGNQTLRNGAIFAMG 166

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILWAS 222
               ++ K + S     + L+S N  Y    ++  +IE    I +++W S
Sbjct: 167 VDDSVLVKRVQSAPEG-LVLLSENPSYSPVLLQGDEIETVRVIGKVIWIS 215


>gi|91224299|ref|ZP_01259561.1| putative cI prophage repressor protein [Vibrio alginolyticus 12G01]
 gi|91190641|gb|EAS76908.1| putative cI prophage repressor protein [Vibrio alginolyticus 12G01]
          Length = 209

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 17/211 (8%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            +   +T + LA   G+  ++           +NR PS E++  I+     T        
Sbjct: 1   MKEVGITQNALAEMMGVSQSAIAHWLS-----KNREPSIENVAAIMKCVGLTHMT--LDS 53

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAI 133
                  +     +  L   P+    F        G     +    + EI   +      
Sbjct: 54  EGFIDYPDDSIANVTKLDIQPTYQKSFPVLSSVQAGQWHEAIEPYSIEEISEWYPTTERC 113

Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISR 188
             +      Q  SM       + +G ++++++ +    G  ++       +   K  I  
Sbjct: 114 SERCFWLTVQGDSMTSPTGVSFPEGTMVLVDTEVDAENGKLVVAKLTDVNEATFKKFIVD 173

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   L +LN  +P+  +  +  + I  ++
Sbjct: 174 SGQKY-LKALNPAFPILPINGN-CKIIGVVI 202


>gi|220904093|ref|YP_002479405.1| putative phage repressor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868392|gb|ACL48727.1| putative phage repressor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 229

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 19/223 (8%)

Query: 11  EAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + + R+ +  N +  + LAR  G+ P S + +++ G            +    AAT    
Sbjct: 9   KTLHRLMQAMNASNDAELARALGITPQSISGARKRGEVPPA------WVQASAAATGVNA 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTV-GVPEIRSPH 127
             L             + +   +     +              G     V    E     
Sbjct: 63  HWLFFGSGPMRLPEAAEGELPSMHGDCEADLIHVPLAEARLSAGTGSLEVSERSEDSYAF 122

Query: 128 NGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            G +        +    +    SM+P     D+++L+         RL        I  K
Sbjct: 123 RGDFLRRKGNPRRMVLMRVSGDSMVPEIFDNDLVLLDKGQTEISPGRLYAVGFEDAIYIK 182

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221
            +       I L S+N  YP  +++           I R+LW+
Sbjct: 183 RIDKVP-GKIILHSVNPAYPPVSLDLRGDLADQFRVIGRVLWS 224


>gi|158338892|ref|YP_001520069.1| S24 family peptidase [Acaryochloris marina MBIC11017]
 gi|158309133|gb|ABW30750.1| peptidase, S24 family [Acaryochloris marina MBIC11017]
          Length = 227

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 10/202 (4%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             + LA+  G++  +  K        RN     E + + L    E +             
Sbjct: 27  NATHLAKVVGVNDRTIRKWMAGTEPARN---YLELLAEKLEVNIEWLVLGRGPIRRADGG 83

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
                     LY   +G+G    +           +           +       +    
Sbjct: 84  IGDGTYVQIPLYDVRAGAGEGMIAEDK--EQIEELMAFSRSWIRSE-LRTSPAHLSLIHV 140

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P  R GD+++++        D + +  R G +  K L    G+ + ++S N  Y
Sbjct: 141 SGDSMEPTLRPGDVVLVDQHQAEGGTDGVYVLRRDGHLQIKRLHWLSGKVLKIISDNPIY 200

Query: 203 PVDTVEM----SDIEWIARILW 220
               V++     + + I R++W
Sbjct: 201 QPIEVDLSQLTEEFQIIGRVIW 222


>gi|331701909|ref|YP_004398868.1| phage repressor like XRE family transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129252|gb|AEB73805.1| phage repressor like transcriptional regulator, XRE family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 237

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 27/234 (11%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    +  NLT   + +  G+  ++  K +   IE   R     ++ K L  +   I  
Sbjct: 4   NLRNRRKELNLTLEEVGKMVGVGKSTIRKWETGYIENMKRD-KIIALSKALKVSPMDIID 62

Query: 72  LLDLPFSDGRTTE-------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                 +                ++  +  +         +  V    N    V +P  R
Sbjct: 63  PNKEISNPMIDKIEEISIQLHPSRQEKVYNYASDQLDEQNNEKVTSMFNHKPLVDIPYGR 122

Query: 125 SPHNGIYAIQTQ-------------------DTRHKTQDTSMLPLYRKGDILILNSAIQV 165
           S   G                          D        SM PL +KG  + ++   +V
Sbjct: 123 STAAGSPINGEDQDTQLIHKLIAGEKVPAGADELITVDGDSMEPLLKKGSQVFIHYQPEV 182

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+  ++  R   +  K        ++ L S+N  Y     +  ++  I +++
Sbjct: 183 ENGEIAIVHIRDVGVTCKKFYVNEDNTVTLKSINEAYDDMVFDCDEVNVIGKVI 236


>gi|327189236|gb|EGE56415.1| transcriptional regulator repressor protein LexA protein [Rhizobium
           etli CNPAF512]
          Length = 239

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107
                + K+  A + ++        S                          S      G
Sbjct: 61  ARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVAAPAAAKPIADNGNSVSVPVMG 120

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
               G   + +                 +    + +  SM+      GD +I+ +    +
Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232


>gi|320659907|gb|EFX27453.1| repressor protein CI [Escherichia coli O55:H7 str. USDA 5905]
          Length = 217

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS   I  +            
Sbjct: 8   RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 62

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                                +P             P    +       + S        
Sbjct: 63  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTQKA--- 117

Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                  + +  SM       P +  G +++++    V  GD  + +    +   K LI 
Sbjct: 118 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 177

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             G+   L  LN  YP+          + +++ ASQ
Sbjct: 178 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 210


>gi|190891622|ref|YP_001978164.1| transcriptional regulator repressor protein LexA protein [Rhizobium
           etli CIAT 652]
 gi|229621743|sp|B3PYQ7|LEXA_RHIE6 RecName: Full=LexA repressor
 gi|190696901|gb|ACE90986.1| transcriptional regulator repressor protein LexA protein [Rhizobium
           etli CIAT 652]
          Length = 239

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107
                + K+  A + ++        S                          S      G
Sbjct: 61  ARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPPAVAAPAAAKPIADNGNSVSVPVMG 120

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
               G   + +                 +    + +  SM+      GD +I+ +    +
Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232


>gi|182678402|ref|YP_001832548.1| LexA repressor [Beijerinckia indica subsp. indica ATCC 9039]
 gi|229621196|sp|B2IKM0|LEXA_BEII9 RecName: Full=LexA repressor
 gi|182634285|gb|ACB95059.1| transcriptional repressor, LexA family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 237

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 58/232 (25%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +    ++   I    +   + PS    K  LD  S +   R  +    R      P+ 
Sbjct: 1   MLTKKQSELLRFIHERLKETGVPPSFDEMKEALDLRSKSGIHRLVMALEERGFIRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTE-------KKEKEIPLLYFPPSGSGGFFDSGV 108
               +++   +     +         +         +              +      G 
Sbjct: 61  ARALEVVRLPDAATPPVPPHGRKFSPSVIEGDLGRVRPHTPHTDDEDSELTTVAIPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G   + +                 +    + +  SM+       D +I+        
Sbjct: 121 IAAGTPISALQHRSHTIGLPMDMLPAGEHYALEVRGDSMIDAGILDADTVIIRRQDNAEN 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K L  R   SI L   N  Y         +    +++
Sbjct: 181 GDIVVALIDDEEATLKRLRRRGA-SIALEPANSAYETRIFGPDRVRIQGKLV 231


>gi|163731991|ref|ZP_02139437.1| LexA repressor [Roseobacter litoralis Och 149]
 gi|161394289|gb|EDQ18612.1| LexA repressor [Roseobacter litoralis Och 149]
          Length = 233

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 65/229 (28%), Gaps = 12/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  A              +G   +             + +      G    G
Sbjct: 61  ARAIEIVKLPEALGGAAQGRFTPRVIEGDKPDAPLPAGAQA-VSSADAVSLPLVGRIAAG 119

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                +          G   + +      + +  SM+      GD++++      + GD 
Sbjct: 120 LPIEAINQNSASVAVPGQMLSGKGDHYALEVKGDSMIDAGINDGDVVVIRETSAADNGDI 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K  + R G SI L + N  Y         ++   +++
Sbjct: 180 VVALIEDHEATLKRYMRR-GSSIALEAANPAYETRVFTEDKVKVQGKLV 227


>gi|152978883|ref|YP_001344512.1| putative phage repressor [Actinobacillus succinogenes 130Z]
 gi|150840606|gb|ABR74577.1| putative phage repressor [Actinobacillus succinogenes 130Z]
          Length = 228

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 34/233 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   +++  A     ++  L  + LA  +G    + +       +   +        +
Sbjct: 1   MKTL-PERLLFA----MQQKGLNQAELASMSGTSQVTISNILNGVTDVPRKGL------E 49

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I  A + ++  LL         + K  K   ++                  G+    +  
Sbjct: 50  IANALDVSLNWLLTGVEDSVTVSTKSGKNDSIIMT--------LLDNRLAAGDGVINLDY 101

Query: 121 PEIRSPHNGIYAIQTQDTRHK---------TQDTSMLP------LYRKGDILILNSAIQV 165
           P+             +  R K             SM          + GD++ ++++IQ 
Sbjct: 102 PDTIRSIEFSAEKFMELFRRKTANNLSMAIIDGNSMYDPNNEEISLKHGDVVFIDTSIQE 161

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              D +      G    K L    G  + ++S N  Y  + +E   +E I  I
Sbjct: 162 FKNDGIYAFVFEGQARIKRLQYMSGYRLKVISDNPTYETEILEKEQVEQIHFI 214


>gi|329726858|gb|EGG63318.1| peptidase S24-like protein [Staphylococcus epidermidis VCU144]
          Length = 208

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 72/225 (32%), Gaps = 24/225 (10%)

Query: 3   SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              +K++    I R+ + +N+    L+    +  T+ +       +   R    E +   
Sbjct: 1   MLGNKQVMAKNISRLMKENNIDRKKLSNDLKVKYTTLSDWIN--AKTYPRIDKIELLADY 58

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
              T   + +  +    +             +   P  S       ++   N  + +   
Sbjct: 59  FNVTKADLVEDKEKQVLETLP----------VKKIPVVSKISAGLPIYSEENLIDYIYF- 107

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                         ++   K    +M  +++ GDI+++     V  G   ++     +  
Sbjct: 108 -----ATNKLNSDKEEFGLKVSGDNMDKIFQDGDIVVVEKDSIVENGQLGVVMINGYNAT 162

Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDTV-EMSDIEWIARILWASQ 223
            K +    G  + L+    N  +      +  +++ I R++ ASQ
Sbjct: 163 VKRI-RYNGDQVILIPESNNTNHYPQVYGKNDEVKIIGRVV-ASQ 205


>gi|302866051|ref|YP_003834688.1| LexA repressor [Micromonospora aurantiaca ATCC 27029]
 gi|315502610|ref|YP_004081497.1| transcriptional repressor, lexa family [Micromonospora sp. L5]
 gi|302568910|gb|ADL45112.1| LexA repressor [Micromonospora aurantiaca ATCC 27029]
 gi|315409229|gb|ADU07346.1| transcriptional repressor, LexA family [Micromonospora sp. L5]
          Length = 260

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 29/219 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            ++I E I    ERH   PS   +    G + P+S   + K    +G  R          
Sbjct: 60  QRRILEFIRNWVERHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLRR--------- 110

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +    + +D+        E    + P   + P          +       +   +P
Sbjct: 111 ----DPNRPRAVDVRAPGEADDEAARAQRPAPAYVPMLGRIAAGGPILAEQAVEDIFPLP 166

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       + +    + +  SML      GD +++        GD +      G+ 
Sbjct: 167 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPNAEVGDIVAAMLD-GEA 218

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    R    + LM  N  +        D   + R++
Sbjct: 219 TVKTYRRR-DGHVWLMPQNPAFDPI--PGDDATIMGRVV 254


>gi|239906085|ref|YP_002952824.1| hypothetical protein DMR_14470 [Desulfovibrio magneticus RS-1]
 gi|239795949|dbj|BAH74938.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 269

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 31/239 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--------RNRWPSTESI 58
           ++I+  +  +A     T + LA+  G+   + + +KR             +    S + +
Sbjct: 32  QEIFTRLK-LATGAG-TDTELAKALGIKQGAVSAAKRSLQIPPVWIAKVSKGFSVSADWL 89

Query: 59  -----------FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                        + +   +T   +                   L+    +       S 
Sbjct: 90  FYGTGPMERGGAAVASGPGQTTGAIPADAPPWMAPEAAPSMGYTLVPKVQARLAAGSGSL 149

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
               G                G      +         SM P+    D ++++ +     
Sbjct: 150 ET-EGEVIGYYAFKTDFLRRKGR---PQKMVLMDVAGDSMEPILLDRDTVLIDESQNAII 205

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221
              L       ++  K L       + L S N  Y    V+      + +  I R++W+
Sbjct: 206 SGGLFAVGVEQEVFVKYLDRIP-GKLVLRSKNSDYQPIEVDMNGDLAASVRIIGRVVWS 263


>gi|302525524|ref|ZP_07277866.1| LexA repressor [Streptomyces sp. AA4]
 gi|302434419|gb|EFL06235.1| LexA repressor [Streptomyces sp. AA4]
          Length = 254

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 61/217 (28%), Gaps = 21/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +++ + I     R    PS   +    GL  TS + S +     R  +   ++      
Sbjct: 50  QQQVLDVIRTWVSRFGYPPSVREIGEAVGLTSTS-SVSHQLRALQRKGYLRRDANRPRAV 108

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               +          D + +  K   +PL+    +G                +   +P  
Sbjct: 109 GVLASTDDNPMGIEMDQQPSVPKAAYVPLVGRIAAGGPV------LAEQAVEDVFPLPRE 162

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     + +         SM+      GD +++        GD +      G+   
Sbjct: 163 IVG-------EGELFLLSVTGDSMVDAAITDGDWVVVRQQPAAENGDIVAAMID-GEATV 214

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K    +    + LM  N  Y        D   + +++
Sbjct: 215 KTFKRK-DGHVWLMPHNEAYEPI--PGDDASILGKVV 248


>gi|256825541|ref|YP_003149501.1| SOS-response transcriptional repressor, LexA [Kytococcus
           sedentarius DSM 20547]
 gi|256688934|gb|ACV06736.1| SOS-response transcriptional repressor, LexA [Kytococcus
           sedentarius DSM 20547]
          Length = 233

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 18/219 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
             ++ E I R  +     PS   +A +  L   S  + +   ++ +    R P+     +
Sbjct: 20  QTRVLEVIRRSIDERGYPPSMREIAEQVELASASSVQHQLNALQRKGYIRRDPNRPRALE 79

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL A          L       +E  +   P   + P          +    +  +   +
Sbjct: 80  ILDAAWPGDRGYRKLDEETWDPSEAADNHPP-ASYVPVVGQIAAGGPILAEEHIEDVFPL 138

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P              +    + +  SM+      GD +++        GD +       +
Sbjct: 139 PRQIVG-------DGELFLLRVKGDSMVDAAICDGDWVVVRRQQAAINGDIVAAMLD-DE 190

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K     + + I L   N  +     + +D   + ++
Sbjct: 191 ATVKTYKKVKNQ-IWLQPHNPLFDPI--DGNDATILGKV 226


>gi|209885431|ref|YP_002289288.1| LexA repressor [Oligotropha carboxidovorans OM5]
 gi|226694236|sp|B6JG34|LEXA_OLICO RecName: Full=LexA repressor
 gi|209873627|gb|ACI93423.1| LexA repressor [Oligotropha carboxidovorans OM5]
          Length = 232

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 58/227 (25%), Gaps = 9/227 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I+   +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQYELLRFINERLKESGIPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLANR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            + +         L          +  +      +                  G    G 
Sbjct: 61  ARAIEVIKLPEPALGSGGRRGFTPSVIEGNLGKARGPASFDESGEQPVAVPVMGRIAAGT 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
               +                 +    + +  SM       GD+ ++  +   + GD ++
Sbjct: 121 PIEALQTRSHTISVPPDMLGAGEHYALEVRGDSMVEAGILDGDMALIQRSENADTGDIVV 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K    R   SI L   N  Y V  +  + +    +++
Sbjct: 181 ALIDEEEATLKRFRRRGA-SIALEPANTAYEVRILPPNRVRIQGKLI 226


>gi|168750476|ref|ZP_02775498.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113]
 gi|168757678|ref|ZP_02782685.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401]
 gi|168783674|ref|ZP_02808681.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076]
 gi|168802673|ref|ZP_02827680.1| putative repressor protein [Escherichia coli O157:H7 str. EC508]
 gi|195937964|ref|ZP_03083346.1| phage-related repressor protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208819582|ref|ZP_03259902.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042]
 gi|188015290|gb|EDU53412.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113]
 gi|188999040|gb|EDU68026.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076]
 gi|189355373|gb|EDU73792.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401]
 gi|189375389|gb|EDU93805.1| putative repressor protein [Escherichia coli O157:H7 str. EC508]
 gi|208739705|gb|EDZ87387.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042]
          Length = 229

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        LT   L    G+   +  K +            T  I +I  A      
Sbjct: 7   ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +   +T +  +                       G         E+       
Sbjct: 61  WLSSGVGNMSDSTVQPIQPTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 117

Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +                    +  SM      GD+L ++  ++   GD +          
Sbjct: 118 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 177

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
            K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 178 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 218


>gi|113461549|ref|YP_719618.1| repressor protein [Haemophilus somnus 129PT]
 gi|112823592|gb|ABI25681.1| conserved hypothetical protein [Haemophilus somnus 129PT]
          Length = 211

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 17/208 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +       NL    +A        +             R P+   + K+L AT     
Sbjct: 7   EFVRDRMSEKNLKQEDIAEAIERTQGAVGHWLTG-----RRSPNFMEVAKMLNATGTDQV 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                           +  I  + F      G        T     +V + EI   +  I
Sbjct: 62  ------------ILNSDGTIEDIEFIGIPKKGLVKVIGEATMGTDGSVDIEEIHVGYIDI 109

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           +    +    + + +SM P    G+ +++      + GD + I+ + G  + K+L  ++ 
Sbjct: 110 FTTDPKAFCLRVKGSSMEPRIHSGEFVLVEPQSPFSNGDDVFIRTKDGKNMIKILDYQKD 169

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                 S+N  +    + + ++E +  +
Sbjct: 170 GEYRFSSINNDHKPFNLAIDEVELVYYV 197


>gi|322507551|gb|ADX03005.1| Putative phage repressor [Acinetobacter baumannii 1656-2]
          Length = 224

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 62/217 (28%), Gaps = 8/217 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I     R  LT    A+ AG+   +    ++          S  S   +      T
Sbjct: 9   IGLRIKEERTRLGLTQPDFAQIAGISKRTLIDWEKDLSSPNAVQLSALSQAGVDVNYIIT 68

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             ++L          +             S   G          N    +          
Sbjct: 69  GNKVLSSIGDLPDGFDGFSLIPVHEDVVISAGHGSVVCAGDNPSN---YMAFRNDWIRSR 125

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           G      +    +    SM P     + ++ N+A        + +         K +  +
Sbjct: 126 GFSVKDLKVFITR--GDSMEPTIADKEPILTNTAEVTPQDGHIYVIRSGEMTWVKRIQRQ 183

Query: 189 RGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222
              ++ L+S N  YP   +++    D+E I +++ +S
Sbjct: 184 LDNTLLLISDNKAYPPMKLDLETAHDVEVIGKVVNSS 220


>gi|295096873|emb|CBK85963.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 192

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 21/198 (10%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQLLDLPFSDG 80
           +T   +A  AG+   S    +     GR R P +   + K L  +       L    +  
Sbjct: 1   MTQVEVANSAGVSQQSIESIE----SGRTRKPRNLLDLAKALKCSP----DWLLNGKNIM 52

Query: 81  RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
              E   + IP+L +  +G           TG+ +  V              +       
Sbjct: 53  PLAEISTRRIPVLSYVQAGELTEAKDVTDLTGD-FEYVLADSD---------VPATCFAL 102

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS--IDLMSL 198
           +    SM P +++GDI+I++  +    G+ ++ K    +   K            +L+ L
Sbjct: 103 RIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNGGHEATFKKYRPLGVGINDFELVPL 162

Query: 199 NCCYPVDTVEMSDIEWIA 216
           N  YPV       ++ I 
Sbjct: 163 NPDYPVLRSADMKLQIIG 180


>gi|218558038|ref|YP_002390951.1| Repressor protein CI from phage origin [Escherichia coli S88]
 gi|218364807|emb|CAR02497.1| Repressor protein CI from phage origin [Escherichia coli S88]
          Length = 233

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS   I  +            
Sbjct: 24  RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 78

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                                +P             P    +       + S        
Sbjct: 79  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 133

Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                  + +  SM       P +  G +++++    V  GD  + +    +   K LI 
Sbjct: 134 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 193

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             G+   L  LN  YP+          + +++ ASQ
Sbjct: 194 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 226


>gi|209407392|emb|CAQ82008.1| repressor protein CI [Enterobacteria phage 2851]
          Length = 219

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS   I  +            
Sbjct: 10  RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                                +P             P    +       + S        
Sbjct: 65  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 119

Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                  + +  SM       P +  G +++++    V  GD  + +    +   K LI 
Sbjct: 120 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 179

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             G+   L  LN  YP+          + +++ ASQ
Sbjct: 180 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 212


>gi|117623333|ref|YP_852246.1| putative CI repressor of bacteriophage [Escherichia coli APEC O1]
 gi|168752471|ref|ZP_02777493.1| CI protein [Escherichia coli O157:H7 str. EC4113]
 gi|187776111|ref|ZP_02800576.2| CI protein [Escherichia coli O157:H7 str. EC4196]
 gi|189010451|ref|ZP_02807272.2| CI protein [Escherichia coli O157:H7 str. EC4076]
 gi|189402456|ref|ZP_02782534.2| CI protein [Escherichia coli O157:H7 str. EC4401]
 gi|189404513|ref|ZP_02790006.2| CI protein [Escherichia coli O157:H7 str. EC4501]
 gi|189405171|ref|ZP_02813660.2| CI protein [Escherichia coli O157:H7 str. EC869]
 gi|189405760|ref|ZP_02824140.2| CI protein [Escherichia coli O157:H7 str. EC508]
 gi|208809661|ref|ZP_03251998.1| CI protein [Escherichia coli O157:H7 str. EC4206]
 gi|208817192|ref|ZP_03258284.1| CI protein [Escherichia coli O157:H7 str. EC4045]
 gi|208820684|ref|ZP_03261004.1| CI protein [Escherichia coli O157:H7 str. EC4042]
 gi|209400501|ref|YP_002271236.1| repressor protein [Escherichia coli O157:H7 str. EC4115]
 gi|209427751|ref|YP_002274162.1| putative bacteriophage CI repressor [Enterobacteria phage YYZ-2008]
 gi|217328107|ref|ZP_03444189.1| repressor protein [Escherichia coli O157:H7 str. TW14588]
 gi|227886483|ref|ZP_04004288.1| repressor protein CI [Escherichia coli 83972]
 gi|237706857|ref|ZP_04537338.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|254793774|ref|YP_003078611.1| repressor protein CI [Escherichia coli O157:H7 str. TW14359]
 gi|300935255|ref|ZP_07150273.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
 gi|300975627|ref|ZP_07173106.1| peptidase S24-like domain protein [Escherichia coli MS 45-1]
 gi|300982354|ref|ZP_07176052.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|301046509|ref|ZP_07193662.1| peptidase S24-like domain protein [Escherichia coli MS 185-1]
 gi|302393138|ref|YP_003828968.1| CI protein [Stx2 converting phage II]
 gi|32128133|dbj|BAC77937.1| CI protein [Stx1 converting phage]
 gi|32128300|dbj|BAC78103.1| CI protein [Stx2 converting phage II]
 gi|115512457|gb|ABJ00532.1| putative CI repressor of bacteriophage [Escherichia coli APEC O1]
 gi|187768994|gb|EDU32838.1| CI protein [Escherichia coli O157:H7 str. EC4196]
 gi|188013689|gb|EDU51811.1| CI protein [Escherichia coli O157:H7 str. EC4113]
 gi|189000092|gb|EDU69078.1| CI protein [Escherichia coli O157:H7 str. EC4076]
 gi|189355469|gb|EDU73888.1| CI protein [Escherichia coli O157:H7 str. EC4401]
 gi|189365099|gb|EDU83515.1| CI protein [Escherichia coli O157:H7 str. EC4501]
 gi|189371589|gb|EDU90005.1| CI protein [Escherichia coli O157:H7 str. EC869]
 gi|189378456|gb|EDU96872.1| CI protein [Escherichia coli O157:H7 str. EC508]
 gi|208729462|gb|EDZ79063.1| CI protein [Escherichia coli O157:H7 str. EC4206]
 gi|208730811|gb|EDZ79501.1| CI protein [Escherichia coli O157:H7 str. EC4045]
 gi|208740807|gb|EDZ88489.1| CI protein [Escherichia coli O157:H7 str. EC4042]
 gi|208970819|gb|ACI32363.1| putative bacteriophage CI repressor [Enterobacteria phage YYZ-2008]
 gi|209161901|gb|ACI39334.1| repressor protein [Escherichia coli O157:H7 str. EC4115]
 gi|217318534|gb|EEC26960.1| repressor protein [Escherichia coli O157:H7 str. TW14588]
 gi|226898067|gb|EEH84326.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836687|gb|EEJ47153.1| repressor protein CI [Escherichia coli 83972]
 gi|254593174|gb|ACT72535.1| repressor protein CI [Escherichia coli O157:H7 str. TW14359]
 gi|300301529|gb|EFJ57914.1| peptidase S24-like domain protein [Escherichia coli MS 185-1]
 gi|300307191|gb|EFJ61711.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|300410290|gb|EFJ93828.1| peptidase S24-like domain protein [Escherichia coli MS 45-1]
 gi|300459507|gb|EFK23000.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
 gi|315287509|gb|EFU46920.1| peptidase S24-like domain protein [Escherichia coli MS 110-3]
 gi|315293071|gb|EFU52423.1| peptidase S24-like domain protein [Escherichia coli MS 153-1]
 gi|323957980|gb|EGB53692.1| peptidase S24 [Escherichia coli H263]
          Length = 231

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS   I  +            
Sbjct: 22  RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 76

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                                +P             P    +       + S        
Sbjct: 77  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 131

Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                  + +  SM       P +  G +++++    V  GD  + +    +   K LI 
Sbjct: 132 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 191

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             G+   L  LN  YP+          + +++ ASQ
Sbjct: 192 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 224


>gi|91210315|ref|YP_540301.1| putative CI repressor of bacteriophage [Escherichia coli UTI89]
 gi|195939328|ref|ZP_03084710.1| putative CI repressor of bacteriophage [Escherichia coli O157:H7
           str. EC4024]
 gi|209447145|ref|YP_002274230.1| repressor [Stx2-converting phage 1717]
 gi|215486128|ref|YP_002328559.1| predicted repressor protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|261225735|ref|ZP_05940016.1| repressor protein CI [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258459|ref|ZP_05950992.1| repressor protein CI [Escherichia coli O157:H7 str. FRIK966]
 gi|291281724|ref|YP_003498542.1| CI protein [Escherichia coli O55:H7 str. CB9615]
 gi|302861176|ref|YP_003848877.1| CI repressor protein [Stx1 converting phage]
 gi|23343453|emb|CAC95084.1| repressor [Enterobacteria phage Nil2]
 gi|91071889|gb|ABE06770.1| putative CI repressor of bacteriophage [Escherichia coli UTI89]
 gi|209361124|gb|ACI43117.1| repressor [Stx2-converting phage 1717]
 gi|215264200|emb|CAS08544.1| predicted repressor protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|290761597|gb|ADD55558.1| CI protein [Escherichia coli O55:H7 str. CB9615]
 gi|294489683|gb|ADE88439.1| peptidase, S24 (LexA) family [Escherichia coli IHE3034]
 gi|307553159|gb|ADN45934.1| putative CI repressor of bacteriophage [Escherichia coli ABU 83972]
 gi|307627374|gb|ADN71678.1| repressor protein CI [Escherichia coli UM146]
 gi|320637900|gb|EFX07682.1| repressor protein CI [Escherichia coli O157:H7 str. G5101]
 gi|320643308|gb|EFX12497.1| repressor protein CI [Escherichia coli O157:H- str. 493-89]
 gi|320648651|gb|EFX17292.1| repressor protein CI [Escherichia coli O157:H- str. H 2687]
 gi|320654244|gb|EFX22302.1| repressor protein CI [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320664729|gb|EFX31869.1| repressor protein CI [Escherichia coli O157:H7 str. LSU-61]
 gi|323953159|gb|EGB49025.1| peptidase S24 [Escherichia coli H252]
          Length = 217

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS   I  +            
Sbjct: 8   RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 62

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                                +P             P    +       + S        
Sbjct: 63  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 117

Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                  + +  SM       P +  G +++++    V  GD  + +    +   K LI 
Sbjct: 118 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 177

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             G+   L  LN  YP+          + +++ ASQ
Sbjct: 178 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 210


>gi|221638398|ref|YP_002524660.1| LexA repressor [Rhodobacter sphaeroides KD131]
 gi|221159179|gb|ACM00159.1| LexA repressor [Rhodobacter sphaeroides KD131]
          Length = 222

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 5/216 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESIFKILAAT 65
           ++ + I    +R  + PS    K  LD  S +   R       R          + +   
Sbjct: 2   ELLDFIKTRMDRDGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLAHRARAIEIV 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIR 124
                       +              +    +G+      G    G     + G P+  
Sbjct: 62  KLPEAMERAGFSARAAKAAAAPLPKGAVTVETAGALDLPLMGRIAAGLPIEAINGGPQSV 121

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           +    + + + Q    + +  SM+      GDI+++      + GD ++      +   K
Sbjct: 122 TVPGMMLSGRGQHYALEVKGDSMIAAGINDGDIVVIREQQTADNGDIVVALVADHEATLK 181

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               R G  I L   N  Y         ++   R++
Sbjct: 182 RYRRR-GGMIALEPANDSYETQVYPEQLVKVQGRLV 216


>gi|218463028|ref|ZP_03503119.1| LexA repressor [Rhizobium etli Kim 5]
          Length = 239

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107
                + K+  A + ++        S                          S      G
Sbjct: 61  ARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVAAPAAAKPIADNGSSVSVPVMG 120

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
               G   + +                 +    + +  SM+      GD +I+ +    +
Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232


>gi|308377110|ref|ZP_07441152.2| repressor lexA [Mycobacterium tuberculosis SUMu008]
 gi|308348968|gb|EFP37819.1| repressor lexA [Mycobacterium tuberculosis SUMu008]
          Length = 248

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I + I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 43  QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 102

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   L  +    G     +   +P+L    +G                +   +P  
Sbjct: 103 VRGADDAALPPVTEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 156

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +      K    SM       GD +++      + GD +      G+   
Sbjct: 157 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 208

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G  + LM  N  +       +D   + +++
Sbjct: 209 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 242


>gi|39998413|ref|NP_954364.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens
           PCA]
 gi|39985360|gb|AAR36714.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens
           PCA]
 gi|298507358|gb|ADI86081.1| helix-turn-helix transcriptional regulator, LexA-related [Geobacter
           sulfurreducens KN400]
          Length = 212

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 61/212 (28%), Gaps = 20/212 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I ++ +   +T    A   G+     +  +R       + PS   +  +       
Sbjct: 12  LGGRIRKLRQARGMTQKAFADSLGIVQGFLSSIERG-----RKVPSDTLVIALCRTYGVN 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  LL    +     +   +                     P G   +   +P       
Sbjct: 67  VTWLLQGKGAMNAPPDGAGEGAGEGT---------PLLESVPQGFPED---IPGDVVQGR 114

Query: 129 GIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
            ++  +             M P  R GD+++ + A     G+ +L+  R G+ + +    
Sbjct: 115 IVFPGMPQGCYAVLAYGDFMAPTIRDGDMVLFDPARPAAPGEIVLVTNRWGEAILRRY-R 173

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   +     N  Y     +  D   I  ++
Sbjct: 174 LKAGELLFSPDNAAYSPFHPDP-DTRIIGTVV 204


>gi|218889540|ref|YP_002438404.1| transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218769763|emb|CAW25523.1| transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 262

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 53/235 (22%), Gaps = 34/235 (14%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
                LT S +A    +  T+ +              +     K        +       
Sbjct: 25  RRELGLTQSSIAEAFRMSQTAISMYMNGSN-----ALNAAVAAKFSTILEVPVSSFSPRL 79

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---------------- 120
            ++     K     P+     +           P  +    +                  
Sbjct: 80  AAEIEGMAKAMHPKPVPDITDTLEPIHPWDDGTPIDDDEVEIPFYKEVEMAAGAGRNIEQ 139

Query: 121 -------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                      +         +     +    SM PL   G  + +++A +      +  
Sbjct: 140 EIKGRKLRFSYATLRAAGVDPSAAICTRVGGNSMEPLISDGATIGVDTATKHITDGEIYA 199

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
                 +  K +    G  + L S N   YP +     +     I  I  + W S
Sbjct: 200 IKHDDLLRVKFVYRLPGGGVRLRSYNRDEYPDEEYTPEEMRSQQISIIGWVFWWS 254


>gi|51596125|ref|YP_070316.1| prophage repressor protein [Yersinia pseudotuberculosis IP 32953]
 gi|51589407|emb|CAH21029.1| putative prophage repressor protein [Yersinia pseudotuberculosis IP
           32953]
          Length = 228

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 62/219 (28%), Gaps = 10/219 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +       NL+   LARK+G+   + +K++    +  N          +L      
Sbjct: 5   LAERVSERRSALNLSQEELARKSGVSRVAISKAELGLTKNFNGNTLFNIARALLCNPEWL 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRS 125
                +       +              P  S  +        GN    +    + EI  
Sbjct: 65  QTGKGNPELQSTSSANWDANVKENKDSHPLQSYEYPKISWVSAGNWSEAIEPYSLDEIDE 124

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180
                            +  SM         +G  +++N  ++   G  ++       + 
Sbjct: 125 WVTTTKYAGHNAFWLDVKGDSMTSPVGLTIPEGMSILVNPDVEPTSGKLVIAKLTDGNEA 184

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K  I   G    L  LN  YP+  +  +    I  ++
Sbjct: 185 TFKRYIEDAGNKY-LKPLNPQYPMIEINGN-CRIIGVVV 221


>gi|309701005|emb|CBJ00303.1| putative prophage repressor [Escherichia coli ETEC H10407]
          Length = 211

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 26/219 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    +   +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 2   GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALAKALQCSP 56

Query: 70  C----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                    L      +        PL+ +  +G                N        S
Sbjct: 57  DYLLKGEDSLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHK-RAIDNWYDTTVDCS 115

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDI 180
                            +  SM         +G I++++  ++   G  ++       + 
Sbjct: 116 E---------DSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEA 166

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 167 TFKKLVIDAGRRF-LKPLNPQYPMIEINGN-CKIIGVVV 203


>gi|326387883|ref|ZP_08209489.1| LexA repressor [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207929|gb|EGD58740.1| LexA repressor [Novosphingobium nitrogenifigens DSM 19370]
          Length = 228

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 56/221 (25%), Gaps = 6/221 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    E   ++PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLTFIQNRLEESGISPSFEEMKDALDLKSKSGVHRLISALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNT 117
            + L    E                       P +    +         G    G     
Sbjct: 61  ARALEVIREPETASPRGAARVATKPAPTPPPPPFVAPEAANDVIEIPLHGRIAAGAPIEA 120

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           +       P         +    +    SM+      GD+ ++        G+ ++   R
Sbjct: 121 LE-GSATLPVPAALLGPGEHYALEVSGDSMVDAGILDGDLALIRRTEVARDGEIVVALVR 179

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
             +   K L   +   I L   N  Y       +D++   +
Sbjct: 180 GEEATLKYLRREK-GMIRLDPANAAYDPQFYTPNDVQVQGK 219


>gi|254486471|ref|ZP_05099676.1| LexA repressor [Roseobacter sp. GAI101]
 gi|214043340|gb|EEB83978.1| LexA repressor [Roseobacter sp. GAI101]
          Length = 239

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 60/227 (26%), Gaps = 9/227 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +     +   I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 8   MLTKKQLDLLAFIHKRVQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 67

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG----SGGFFDSGVFPTGNK 114
            + +                        ++               S      G    G  
Sbjct: 68  ARAIEVVKLPDSMGGLPGSGFTPRVIDGDRPDMPPPAAAQPVSNASFDIPMMGRIAAGVP 127

Query: 115 WNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
              +          G   + + +    + +  SM+      GD++++      + GD ++
Sbjct: 128 IEAISTMTHSVAVPGSMVSGRGEHYALEVKGDSMIDAGINDGDVVVIRETSVADNGDIVV 187

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K      G SI L + N  Y    +    ++   R++
Sbjct: 188 ALVEDHEATLKTFKRH-GSSIALEAANPAYETRVLPADKVKVQGRLV 233


>gi|114328257|ref|YP_745414.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1]
 gi|114316431|gb|ABI62491.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1]
          Length = 255

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 68/232 (29%), Gaps = 21/232 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF--KILAATN 66
           + E +     +   +   LA++AG   T+ +K +R   +     P         +L    
Sbjct: 19  VGERMRHARIQRGWSQDALAKEAGTSQTTIDKIERNLTQRSRALPRLAQCLGVDLLTLDP 78

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-------FDSGVFPTGNKWNTVG 119
           + +        ++      ++ +  +                          G      G
Sbjct: 79  DYLGDYQPGTEAEAPPQSPRKLQGQVRIPAQPIPPPITGLSVRSVPVFGTAQGGALGATG 138

Query: 120 VPE-----IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           +P+       +   G             +  SM P    G ++ ++        D +++ 
Sbjct: 139 LPDSAQALDWARLPGPLTGIPGLFALYVEGDSMEPWVEHGHLIYIHPTRPAAPRDHVVVV 198

Query: 175 PRTGD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220
            + G+      + K L+ R    + L   N       ++   +  I R++ W
Sbjct: 199 VQDGEYDEPRALVKRLVRRTAGRLVLHQYNPA-GEIEIDARTVMRIYRVIPW 249


>gi|299134983|ref|ZP_07028174.1| transcriptional repressor, LexA family [Afipia sp. 1NLS2]
 gi|298589960|gb|EFI50164.1| transcriptional repressor, LexA family [Afipia sp. 1NLS2]
          Length = 234

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 57/229 (24%), Gaps = 11/229 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I+   +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQYELLRFINERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLANR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-------GSGGFFDSGVFPT 111
            + +                    +  +     +    P                G    
Sbjct: 61  ARAIEVIKLPEPVASSGARRGFTPSVIEGNLGKVRSTVPGGFDESGEQPVAVPVMGRIAA 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
           G     +                 +    + +  SM       GD+ ++      + GD 
Sbjct: 121 GTPIEALQTRSHTISVPPDMLGSGEHYALEVRGDSMVEAGILDGDMALIQRNENADTGDI 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    R   SI L   N  Y V  +  + +    +++
Sbjct: 181 VVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 228


>gi|309807064|ref|ZP_07701044.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
           03V1-b]
 gi|325911652|ref|ZP_08174060.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
           143-D]
 gi|308166560|gb|EFO68759.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
           03V1-b]
 gi|325476638|gb|EGC79796.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
           143-D]
          Length = 227

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 59/223 (26%), Gaps = 24/223 (10%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT------- 65
           ID   +++NLT   L +K G   +S ++          R+P  E I +I           
Sbjct: 12  IDYFRKQNNLTMEELGQKLGKATSSISRWVSGE-----RYPKIEEIEQIANFFNTDIYTL 66

Query: 66  --NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG------FFDSGVFPTGNKWNT 117
                  +                ++  +  +              +  G    G     
Sbjct: 67  IFGFNYNEDSKSDLLTVYNQLADIRKHKVYSYAQQQLDEQNKKRSIYVVGTSAAGEPIEY 126

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                     +        D     +  SM P      I+  +    +  G+  + +   
Sbjct: 127 GDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGEIGIFEING 183

Query: 178 GDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +  K        + I L S+N  Y         +  + +++
Sbjct: 184 SAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 226


>gi|257468521|ref|ZP_05632615.1| LexA repressor [Fusobacterium ulcerans ATCC 49185]
 gi|317062781|ref|ZP_07927266.1| LexA repressor [Fusobacterium ulcerans ATCC 49185]
 gi|313688457|gb|EFS25292.1| LexA repressor [Fusobacterium ulcerans ATCC 49185]
          Length = 212

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 19/216 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I +  E   L+   LA   G    TS +K+++   +            + L  T  
Sbjct: 3   IGERIKKKREELKLSQEQLAEIMGYKSKTSIHKAEQGITDLPQS--KIIEFARALKTTPS 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +    +           K + I +  +  +             GN +  +    +    
Sbjct: 61  YLMGWEEKIEKSNAVILDKSQFIYVPVYGKA-----------SAGNGYINMDT-VLYDKL 108

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             I          +    SM P    G+ ++++      C  ++ +     +   K++  
Sbjct: 109 IHINGYSHDSFLIEVSGDSMEPTILDGEFVLVDPTRTEICEGKIYVITYNNETYIKMIEK 168

Query: 188 RRGRSID-LMSLNCCYPVDTVEMSD---IEWIARIL 219
                I  L S+N  Y    ++  +   ++   R++
Sbjct: 169 HEEDEIVLLKSVNQKYRDKVIKKEEFENVKIEGRVV 204


>gi|258544054|ref|ZP_05704288.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826]
 gi|258520682|gb|EEV89541.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826]
          Length = 211

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 14/211 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++ E   +T    A + G+  ++    ++       R P  + + ++         
Sbjct: 5   ERLRKIVEGSGITQGDFAAQMGVAVSAQRNYEKG-----LRKPDIDYLQRL-------HD 52

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHNG 129
              D+ +    TT+  E  + +      GS G    G     +    + V +       G
Sbjct: 53  AGYDVLYLLTGTTKIPEGYVRIPKMSARGSMGSGIDGALAHDDVLEYITVSKDWIDRTMG 112

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            Y+          +  SM P +     L+++  +     D + +    G++  K L  + 
Sbjct: 113 TYSKADNLRIIHGRGDSMAPTFSDNTPLLVDIGVTNFQQDAIYLFQLFGEVYIKRLQRKP 172

Query: 190 GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
                 +S N  Y    + E  D   IA ++
Sbjct: 173 RGGYKAISDNKYYESFDILEPDDFRIIALVV 203


>gi|84687233|ref|ZP_01015114.1| LexA repressor [Maritimibacter alkaliphilus HTCC2654]
 gi|84664821|gb|EAQ11304.1| LexA repressor [Rhodobacterales bacterium HTCC2654]
          Length = 230

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 7/225 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +     + E I +  +R  + PS    K  L   S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRIQRDGVPPSFDEMKEALQLRSKSGIHRLITALEERGYIRRLAHR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
               ++    +                 ++ +            +      G    G   
Sbjct: 61  ARAIEVTRLPDALDPSGKAGFEPRVIDGDRPDSRPAQAMPLEGSAMDLPLLGRIAAGTPI 120

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
             +   +      G      +    + +  SM+      GD++I+      + GD ++ +
Sbjct: 121 EAIEDGQSHVSVPGAMVGNGKHYALEVKGDSMINAGINSGDVVIIRETSHADNGDIVVAQ 180

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K    R G  I L + N  +    +    I+   +++
Sbjct: 181 VDGYEATLKRF-RRAGDMIALEAANPAFETRILPQGQIKVQGKLV 224


>gi|294791093|ref|ZP_06756251.1| repressor LexA [Scardovia inopinata F0304]
 gi|294458990|gb|EFG27343.1| repressor LexA [Scardovia inopinata F0304]
          Length = 264

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 59/230 (25%), Gaps = 23/230 (10%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNK-----------SKRFGIEGRNRWPS 54
           +I +AI+  +      PS   +A+  GL  TS  K            +    +GR     
Sbjct: 34  QILQAIEEYSTTKGYIPSFREIAQLVGLKSTSSVKHQLNVLEKKGFIRLGANKGRAIELI 93

Query: 55  T----ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           T    ESI        E          + GR                S        G   
Sbjct: 94  THLEEESITDASPQAQEKDQDHETDSGTYGRAEIYPFPTSQSESIVQSTDVPLV--GRIA 151

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
            G         +                  +    SM+      GD +++        GD
Sbjct: 152 AGTPITAEQHIDDVMRLPQRLTGDGNLFMLEVHGDSMIDAAICDGDFVVVREQHTAENGD 211

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +       +   K     +   + LM  N  Y     + +    + +++
Sbjct: 212 IVAALLD-DEATVKTFRKDKSGHLWLMPHNPEYSPI--DGTYATIMGKVV 258


>gi|317484266|ref|ZP_07943191.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924474|gb|EFV45635.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
          Length = 241

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 69/235 (29%), Gaps = 33/235 (14%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +DR+     L   + LA   G+ P + ++++R       R      + K+      ++
Sbjct: 12  AILDRLLSGAGLHRDAQLAALLGVSPQAVSQARR------KRKIPEGWVVKVSQQCGLSM 65

Query: 70  CQLLDLPFSDGRT--TEKKEKEIPLLYFPPSGS--------GGFFDSGVFPTGNKW---- 115
             L+     +     +             P+G+             +     G       
Sbjct: 66  DWLMFGKGDESTPVASHAPVASSTSQASTPAGAAVPDLDLLCIPLVAASLSAGVGSLQTE 125

Query: 116 ----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
               +            G      +    K    SM P    GD+ +++ + Q      +
Sbjct: 126 ADVLDYFAFRSDWLCRKG---NPDKMVLMKVYGDSMEPEICHGDMALIDQSKQQIYPHTI 182

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221
                  +I  K + +  G  + L SLN  Y    V+        +  I +++W 
Sbjct: 183 YAVGVNEEIYIKQIETLPGHRMLLRSLNERYEPIEVDLRGDMAESVRIIGKVIWW 237


>gi|254511805|ref|ZP_05123872.1| LexA repressor [Rhodobacteraceae bacterium KLH11]
 gi|221535516|gb|EEE38504.1| LexA repressor [Rhodobacteraceae bacterium KLH11]
          Length = 232

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 13/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +   + PS    K+ LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRVQVDGVPPSFDEMKSALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  +               G   E             +        G    G
Sbjct: 61  ARAIEIVKLPESLGGEPTVGFKPRVISGDRPEGPRPANFEPVTVDAMELPVM--GRIAAG 118

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
                +     R    G   +   +    + +  SM       GD++++      + GD 
Sbjct: 119 VPIEAISHVSHRVAVPGSMVSGSGEHYALEVRGDSMIEAGINDGDVVVIRETSAADNGDI 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    R G++I L + N  Y    +    ++   R++
Sbjct: 179 VVALVEDQEATLKRFFRR-GQAIALEAANPAYETRVLPEDKVKVQGRLV 226


>gi|324116784|gb|EGC10698.1| peptidase S24 [Escherichia coli E1167]
          Length = 229

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 54/222 (24%), Gaps = 23/222 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        LT   L    G+   +  K +            T  I +I  A      
Sbjct: 7   ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +   +T +                          G         E+       
Sbjct: 61  WLSSGVGNMSDSTVQPIPSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 117

Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +                    +  SM      GD+L ++  ++   GD +          
Sbjct: 118 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 177

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
            K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 178 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 218


>gi|309797052|ref|ZP_07691451.1| peptidase S24-like domain protein [Escherichia coli MS 145-7]
 gi|308119335|gb|EFO56597.1| peptidase S24-like domain protein [Escherichia coli MS 145-7]
          Length = 251

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        LT   L    G+   +  K +            T  I +I  A      
Sbjct: 29  ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +   +T +  +                       G         E+       
Sbjct: 83  WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139

Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +                    +  SM      GD+L ++  ++   GD +          
Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
            K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 200 VKRLQMMKN-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240


>gi|306841869|ref|ZP_07474549.1| LexA repressor [Brucella sp. BO2]
 gi|306287999|gb|EFM59401.1| LexA repressor [Brucella sp. BO2]
          Length = 240

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 56/235 (23%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105
            + L            L           E  +  +                         
Sbjct: 61  ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
            G    G   + +                 +    + +  SM+      GD +I+     
Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGTGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N G+ ++      +   K    +   SI L + N  Y         +    +++
Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234


>gi|254821025|ref|ZP_05226026.1| LexA repressor [Mycobacterium intracellulare ATCC 13950]
          Length = 236

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 56/217 (25%), Gaps = 20/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 31  QRTILNVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVD 90

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                           G     +   +P+L    +G                +   +P  
Sbjct: 91  VRGADDDVAAPATEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 144

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +      K    SM       GD +++      + GD +      G+   
Sbjct: 145 LVG-------EGTLFLLKVVGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMLD-GEATV 196

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G  + LM  N  +       +D   + +++
Sbjct: 197 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 230


>gi|225351434|ref|ZP_03742457.1| hypothetical protein BIFPSEUDO_03029 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157778|gb|EEG71061.1| hypothetical protein BIFPSEUDO_03029 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 238

 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 67/220 (30%), Gaps = 17/220 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNR-WPSTESIFK 60
            +K+  AI +        PS   +   AGL  P+S  ++ +    +G  R   +     +
Sbjct: 24  QRKVLGAIKKHLVEQGFAPSFREIGEAAGLKSPSSVKHQLQVLDDKGFIRMNANKGRAIE 83

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +++  ++ +            +       I      P          +    +  + + +
Sbjct: 84  VVSFDDDEVSPGKVAQVIPFPSQSDSSGSIMASRDVPLVGRIAAGVPITAEQHVDDVMRL 143

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +               +    SM+      GD +++        GD +       +
Sbjct: 144 PERLTGT-------GNLFMLEVHGDSMIDAAICDGDFVVVREQNTAENGDIVAALLD-DE 195

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +    + L+  N  Y     + +  E + +++
Sbjct: 196 ATVKTF-RKDHGHVWLIPHNPAYSPI--DGTHAEIMGKVV 232


>gi|58040701|ref|YP_192665.1| LexA repressor [Gluconobacter oxydans 621H]
 gi|58003115|gb|AAW62009.1| LexA repressor [Gluconobacter oxydans 621H]
          Length = 259

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 58/241 (24%), Gaps = 31/241 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSK---------- 42
           M +    ++   ID    R   +PS         L  K+G+     +  +          
Sbjct: 22  MLTRKQHQLLLYIDDHLRRTGYSPSFDEMKDALELRSKSGIHR-LISALEERGFLRRHHH 80

Query: 43  RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT---EKKEKEIPLLYFPPSG 99
           R       R P   +       T       +      G      E            P  
Sbjct: 81  RARALEVLRLPHMGTEAPAATGTGTAFVPAVLNQGQTGLEGAFSEASVANDRQTVSIPLY 140

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILI 158
                   +    +  + + VP              +         SM       GDI I
Sbjct: 141 GRIAAGLPIEAMQDDSDRIDVPVSLLGT-------GEHYALTVAGDSMIEAGILDGDIAI 193

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +        G  ++      ++  K L  R G  I L + N  Y         +    R+
Sbjct: 194 IRRRETAENGQIIVALIDEQEVTLKKLRRR-GSMIALEAANRDYETRIFPAERVHIQGRL 252

Query: 219 L 219
           +
Sbjct: 253 V 253


>gi|229083181|ref|ZP_04215564.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2]
 gi|228700099|gb|EEL52702.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2]
          Length = 214

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 23/217 (10%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ +++N+T   LA    +  T+  + +        R P    I +I    N +    
Sbjct: 8   LSQLMKKNNMTDEQLAELLSVSRTTVLRWRNGE-----RSPKMSKISQIAKILNVSATYF 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           +D   S         K    +Y   +              N    + VP+I     G   
Sbjct: 63  IDENESYCPEDHAITKRNIPIYGTIAAGKPI-----EAIENVIGDIQVPDIILDKYGF-- 115

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
              +    +    SM  +   G I +L     +N GD   +     D   K +       
Sbjct: 116 --EKLLALRINGDSMNRIVHDGHIAVLERTTNINNGDIAAVLINGYDATLKRIYK-TNNR 172

Query: 193 IDLMSL--NCCYPVDTVEMSDIE------WIARILWA 221
           I L     N        + +DIE       + + +W+
Sbjct: 173 IILEPDSFNPSIHPLMFDCTDIENCPEIKVVGKYIWS 209


>gi|241663869|ref|YP_002982229.1| phage repressor [Ralstonia pickettii 12D]
 gi|240865896|gb|ACS63557.1| putative phage repressor [Ralstonia pickettii 12D]
          Length = 292

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 13/212 (6%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E  +++PS  A    +      + K+          + E +   +   +E+  + +   
Sbjct: 75  CEPADISPSLAAEMKVISKPL--QLKQLNTPEGTEELAKEQMRAAIHKLDESELRAIAES 132

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT------VGVPEIRSPHNGI 130
                        +  L  P +             GN   T        +P        +
Sbjct: 133 KGFPARPIAVYNTLEELP-PETTVLITHVDVALSAGNGRETWHIEEKEPLPFQADYIRRL 191

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGDIVAKVLISRR 189
            A        K +  SM P     D ++++ A +       +      G+++ K L    
Sbjct: 192 DASPKNLVAVKVRGDSMEPRLFDDDTVVVDRADRRIPASGGVFAIVYAGEMLVKRLFKLP 251

Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218
             SID++S N  Y    V+      I+ + R+
Sbjct: 252 DGSIDIVSDNPKYKSLVVQPDQLEHIDIVGRV 283


>gi|209549197|ref|YP_002281114.1| LexA repressor [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226694237|sp|B5ZN98|LEXA_RHILW RecName: Full=LexA repressor
 gi|209534953|gb|ACI54888.1| SOS-response transcriptional repressor, LexA [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 239

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSG 107
                + K+  A + +I        S                          S      G
Sbjct: 61  ARALEVIKLPEAYSPSIQPRRGFSPSVIEGSLGKPQPAAAPAPAKPVADNGNSVSVPVMG 120

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
               G   + +                 +    + +  SM+      GD +I+ +    +
Sbjct: 121 RIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTAS 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 PGDIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 232


>gi|145639950|ref|ZP_01795549.1| transcriptional activator-regulatory protein [Haemophilus
           influenzae PittII]
 gi|145270916|gb|EDK10834.1| transcriptional activator-regulatory protein [Haemophilus
           influenzae PittII]
 gi|309751666|gb|ADO81650.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
          Length = 235

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 67/229 (29%), Gaps = 23/229 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             + E +  M + + L+   LA K G+   +  +  +  I       + + I +I  A  
Sbjct: 4   DTLAERLRYMMDFNALSQQSLADKVGVSQQAIGQILKGEIS------NPKKILEISTALG 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGN-KWNTVGVPEI 123
                L         T +    +  +             +       G+        PE+
Sbjct: 58  VNPHWLKTGRGPIEPTAQGTSIQSLVSTDSDEHHRFRVDYLDVQAAAGHSGIENADYPEV 117

Query: 124 RSPHNGIY---------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                            +     +       SM+P   KGDI+ +++ +    G+ +   
Sbjct: 118 IQSIYFSKEGLLEIVGKSTNDGISLINVPTDSMVPTINKGDIVFVDTKVNYYTGEGVYFF 177

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI----EWIARIL 219
              G    K L+         +S N  YP   +   ++      I + +
Sbjct: 178 LLNGGAYIKRLMKLPTGVYRAISDNSVYPDFDIS-DELFDTAVIIGKFI 225


>gi|325675185|ref|ZP_08154870.1| LexA repressor [Rhodococcus equi ATCC 33707]
 gi|325553891|gb|EGD23568.1| LexA repressor [Rhodococcus equi ATCC 33707]
          Length = 220

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 29/218 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++I   I    + H   PS   +A   GL   ++ +K  +   +               
Sbjct: 22  QQRILLTIRDWVDGHGCPPSTREIADAVGLRSTSTVSKHLKALEDK-------------- 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                       L      T     +        P        + +    +    + +P 
Sbjct: 68  GFLRRGGSMTRQLDVRPFLTGSAPGRSTENTVTVPVVGDIAAGAPILAEEHADEMLSLPR 127

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                             + +  SM+      GD +++    + + G+ +      G+  
Sbjct: 128 ELVGS-------GTVFALRVRGESMVDAAICDGDTVVVRRQEEAHSGEIVAAMID-GEAT 179

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            KVL  R    + L   N  Y    ++  +   + +++
Sbjct: 180 VKVLRRR-NGHVLLEPRNPAYE--VIDGDEAVILGKVV 214


>gi|157155496|ref|YP_001461935.1| putative repressor protein [Escherichia coli E24377A]
 gi|191166562|ref|ZP_03028391.1| putative repressor protein [Escherichia coli B7A]
 gi|218694199|ref|YP_002401866.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           55989]
 gi|218703832|ref|YP_002411351.1| regulatory protein CI from bacteriophage origin [Escherichia coli
           UMN026]
 gi|300819564|ref|ZP_07099758.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|300895848|ref|ZP_07114428.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|331676460|ref|ZP_08377157.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli
           H591]
 gi|157077526|gb|ABV17234.1| putative repressor protein [Escherichia coli E24377A]
 gi|190903367|gb|EDV63087.1| putative repressor protein [Escherichia coli B7A]
 gi|218350931|emb|CAU96632.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           55989]
 gi|218430929|emb|CAR11803.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           UMN026]
 gi|300360234|gb|EFJ76104.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|300527890|gb|EFK48952.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|320196986|gb|EFW71605.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           WV_060327]
 gi|320643661|gb|EFX12798.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           O157:H- str. 493-89]
 gi|320648981|gb|EFX17575.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           O157:H- str. H 2687]
 gi|320665037|gb|EFX32141.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323153453|gb|EFZ39708.1| helix-turn-helix family protein [Escherichia coli EPECa14]
 gi|325497847|gb|EGC95706.1| putative repressor protein [Escherichia fergusonii ECD227]
 gi|331075953|gb|EGI47250.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli
           H591]
          Length = 251

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        LT   L    G+   +  K +            T  I +I  A      
Sbjct: 29  ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +   +T +  +                       G         E+       
Sbjct: 83  WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139

Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +                    +  SM      GD+L ++  ++   GD +          
Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
            K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 200 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240


>gi|323159779|gb|EFZ45752.1| peptidase S24-like family protein [Escherichia coli E128010]
          Length = 230

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 15/215 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +D        T   LA++ G+  +S N+        R     T  I K+L    E + 
Sbjct: 5   ERLDLAMRNAKFTQGRLAKEVGMAQSSVNQLLNKANGSR----KTVEIAKVLGVNPEWLA 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH--N 128
             +            + + I    +             +  G        P+I       
Sbjct: 61  SGVGPMEIVTSADSHQIRNIS-EDWVTDSYVVDVLDIRYSCGPGSYNSDFPDIVRSIAIE 119

Query: 129 GIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             YA +       +          SM       D++ ++ +++   GD +     +G   
Sbjct: 120 PGYASRVFGGRPASAIKAINAHGDSMKGTIDPEDLVFVDVSVRTFNGDGIYAFTYSGTSH 179

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            K L   +  ++ ++S N  Y    +E  D E + 
Sbjct: 180 IKRLQKIKD-TLTVISDNPAYKDWAIEPEDFEQLH 213


>gi|302383254|ref|YP_003819077.1| LexA family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193882|gb|ADL01454.1| transcriptional repressor, LexA family [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 230

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 6/224 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   ++PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQHELLMFIHERIKETGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60

Query: 59  FKILA--ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + L      E             R    +    P    P + +      G    G    
Sbjct: 61  ARALEVVKLPEQATTGPVRGRQPFRPDVIEGGGRPRAAEPANDTRELVLVGKIAAGVPIA 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            +     R           +    + +  SM       GD++++      + G+ ++   
Sbjct: 121 AIQQDHGRYSVPEAMLGAGEHYMLEIEGDSMIEAGILNGDLVVIKRVDTASSGEIVVALV 180

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   K L  ++G SI L   N  Y         +E   +++
Sbjct: 181 EGEEATLKRL-RKKGNSIALEPANRAYETRIFGPDQVEVQGKLV 223


>gi|256061227|ref|ZP_05451378.1| LexA repressor [Brucella neotomae 5K33]
 gi|261325234|ref|ZP_05964431.1| LexA repressor [Brucella neotomae 5K33]
 gi|261301214|gb|EEY04711.1| LexA repressor [Brucella neotomae 5K33]
          Length = 240

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 56/235 (23%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105
            + L            L           E  +  +                         
Sbjct: 61  ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
            G    G   + +                 +    + +  SM+      GD +I+     
Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N G+ ++      +   K L      SI L + N  Y         +    +++
Sbjct: 181 ANPGEIVVALVDEEEATLKRLRREGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234


>gi|296101665|ref|YP_003611811.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056124|gb|ADF60862.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 256

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 15/228 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +        LT   L    G+   +  K +        +     +  K+      +
Sbjct: 27  LAERLKEARTLRGLTQKALGDLVGVSQAAIQKIETGKANQTTKLVELANALKV-KPEWLS 85

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-------SGGFFDSGVFPTGNK------W 115
             +   L           ++   +  +  S           F        G+       +
Sbjct: 86  SGEGAMLLTGQDEAIPPSDQWGTVEPWDNSTPLPDDEVEVPFLKDIELACGDGTFPREDY 145

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           N   +   ++    + A +           SM P+  +G  + +N   +     ++    
Sbjct: 146 NGYKLRFSKATLRRVNAHRESVICFPAHGNSMEPVIPEGTTVAININDKKIVDGKVYAIS 205

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
           + G    K+L       + + S N   +P +  ++  ++ I R+ W S
Sbjct: 206 QDGWNRLKILYRVGPNRLSIRSFNHVEHPDEEADLDSVQIIGRMFWTS 253


>gi|331695961|ref|YP_004332200.1| SOS-response transcriptional repressor, LexA [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950650|gb|AEA24347.1| SOS-response transcriptional repressor, LexA [Pseudonocardia
           dioxanivorans CB1190]
          Length = 243

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 64/226 (28%), Gaps = 25/226 (11%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPS 54
           TS +   +K+ E I    ER    PS   +    GL  TS   ++ +    +G   R P+
Sbjct: 29  TSLTPRQRKVLEVIRDWVERFGYPPSVREIGDAVGLTSTSSVHHQLRSLERKGYLRRDPN 88

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                 + A  +              R        +PLL    +G               
Sbjct: 89  RTRAVDVRAPEDVADADADSRDPGTTRDEHPAPAYVPLLGDIAAGGPI------LAEQAV 142

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P            +        +  SM       GD +++        G+ +  
Sbjct: 143 QSVFPLPREIVG-------EGTLFLLNVRGDSMVEAAITDGDWVVVRQQPVAEQGEIVAA 195

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G+   K    R    + LM  N  Y        +   + R++
Sbjct: 196 MID-GEATVKTFRRR-DGHVWLMPANPAYDPI--PGDEATILGRVV 237


>gi|167856791|ref|ZP_02479443.1| putative prophage repressor CI [Haemophilus parasuis 29755]
 gi|167852086|gb|EDS23448.1| putative prophage repressor CI [Haemophilus parasuis 29755]
          Length = 217

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 67/218 (30%), Gaps = 28/218 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN---- 66
           + +    +  NL    +A   G    +             R P+   + +++  T     
Sbjct: 7   QYVREKMQEQNLRQDDIAESMGKTQGAIGHWLTG-----RRMPNVNEVAQMINLTGVNKV 61

Query: 67  --ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                  + D   +   T+ KK +  PL+    +G            G  ++ +      
Sbjct: 62  ILNGDGTIEDFDPNITPTSVKKSRAYPLVSSIQAGMWTETYDFRDSEG--YDYIDTEIDA 119

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
            P              +    SM P + +GD+++++   + + GD +      G+   K 
Sbjct: 120 GP---------DAFFLRVSGMSMEPKFSEGDLVLIDVRKRPHPGDFVAAVNGNGEATLKR 170

Query: 185 LISR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                          +L+ LN  +P  +    DI  I 
Sbjct: 171 YRELGELSPSGNPHFELVPLNQDFPTLSSMKQDIRIIG 208


>gi|90423954|ref|YP_532324.1| LexA repressor [Rhodopseudomonas palustris BisB18]
 gi|123089654|sp|Q215D1|LEXA_RHOPB RecName: Full=LexA repressor
 gi|90105968|gb|ABD88005.1| SOS-response transcriptional repressor, LexA [Rhodopseudomonas
           palustris BisB18]
          Length = 237

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +    ++   I+   +   + PS    K  LD  S +   R       R      P+ 
Sbjct: 1   MLTRKQYELLRFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------GFFDSGV 108
               +++      +             +  +     +      G              G 
Sbjct: 61  ARAIEVIKLPELGVNPGGGNGRRGFTPSVIEGNLGRVRPAASLGGDDDSGRTVAVPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G     +                 +    + +  SM+      GD+ ++      + 
Sbjct: 121 IAAGTPIEALQTRSHTISMPADMLGSGEHYALEVRGDSMVDAGILDGDMALIQKNDSADT 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K    R   SI L   N  Y V  +  + +    +++
Sbjct: 181 GDIVVALIDEEEATLKRFRRRGA-SIALEPANAAYEVRILPPNRVRIQGKLI 231


>gi|311068351|ref|YP_003973274.1| LexA repressor [Bacillus atrophaeus 1942]
 gi|310868868|gb|ADP32343.1| LexA repressor [Bacillus atrophaeus 1942]
          Length = 206

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 62/227 (27%), Gaps = 36/227 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S ++  I   I    +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQLDILRFIKAEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                     E+ +     +   P        S +    N
Sbjct: 61  TKPRAIEILD-------------------EEEVQIPKSQVVNVPVIGKVTAGSPITAVEN 101

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +P+   P              +    SM+       D +I+      N G+ ++
Sbjct: 102 IEEYFPLPDRMVPP------DEHVFMLEIMGESMIDAGILDKDYVIVKQQSTANNGEIVV 155

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         + L   N       ++   +  + +++
Sbjct: 156 AMTEDDEATVKRFYK-EDTHVRLQPENPTMEPIILQN--VSILGKVI 199


>gi|62179766|ref|YP_216183.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62127399|gb|AAX65102.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 259

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++    N+  + LA   G+D  + ++ +     G+ +  + +++ ++      
Sbjct: 2   NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLGV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117
            I +L     S G T  K                          GN              
Sbjct: 58  DIAELFT-SDSKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +   + ++          +      +  SM P    GD++ ++ +I    GD + +    
Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
             I  K L       + ++S N  Y   ++            ++L  SQ
Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223


>gi|16273380|ref|NP_439627.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20]
 gi|260580259|ref|ZP_05848088.1| transcriptional regulatory protein [Haemophilus influenzae RdAW]
 gi|1175815|sp|P44207|Y1476_HAEIN RecName: Full=Uncharacterized HTH-type transcriptional regulator
           HI_1476
 gi|1574317|gb|AAC23123.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20]
 gi|260092936|gb|EEW76870.1| transcriptional regulatory protein [Haemophilus influenzae RdAW]
          Length = 239

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 86/239 (35%), Gaps = 27/239 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +     E I+ + ++ N  PS  ARK G+  ++  + ++   +     PS  ++ K
Sbjct: 1   MQYQNQDNFPERIEYLVDKLN-GPSEFARKTGVTLSTITRWRKGEAD-----PSRSNLVK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPT----- 111
           I   T  +I  L      + +TTE+K                   G      + +     
Sbjct: 55  IAEVTGVSIEWLATGKIKEEKTTEEKPAGSLVSRAFERMQAMLEEGVSMIDSYSSINVSA 114

Query: 112 --GNKWNTVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
             G+    +  P+ + P++                      SMLP     D ++++ + +
Sbjct: 115 GFGSFNEGITQPDGQEPYSDELLTSLGVKADNCAVFWANGNSMLPTINNYDQMLVDLSRK 174

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMS---DIEWIARIL 219
              GDR+ +      +  K +       I L+S N   YP  ++      +++ I +++
Sbjct: 175 EIQGDRIYLVQNGESVWVKRV-KMEWDGISLISDNKEEYPPISITGENAQNLQIIGQVV 232


>gi|311898752|dbj|BAJ31160.1| putative LexA repressor [Kitasatospora setae KM-6054]
          Length = 289

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 56/219 (25%), Gaps = 28/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    +R    PS   + +  GL  TS   ++      +G  R          
Sbjct: 88  QRRVIEVIRDSVQRRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLR---------- 137

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                              R T  +    P   + P          +       +   +P
Sbjct: 138 --RDPHRPRAYEVRGVEVARPTATETSGRPSTSYVPLVGRIAAGGPILAEQTVEDVFPLP 195

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       + +      +  SM       GD + +        GD +      G+ 
Sbjct: 196 RQLVG-------EGELFALTVKGDSMVEAAICDGDWVTVRKQPVAENGDIVAAMID-GEA 247

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L       I LM  N  Y        +   + +++
Sbjct: 248 TVKRLKR-EDGKIWLMPHNAAYEPI--PGDNATILGKVV 283


>gi|260556784|ref|ZP_05829002.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
 gi|260410043|gb|EEX03343.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
          Length = 224

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 24/223 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +       E +  + +   +T   LA K+G+  +  +  +    +      ST SI +
Sbjct: 5   MATL-----GENLKAIRKAKKMTQKELAMKSGVKQSVISDLETGNAK------STGSILE 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   T  +L     S      +   +  +       +G                +  
Sbjct: 54  LATALGVTAEELKKGIVSKFDNNVEPITKKLIPVLSWVQAGTMTSVEAIDPNKINEWLP- 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRT 177
           P                   +    S  P Y +GD +++N   QV      D ++++  +
Sbjct: 113 PLSADD-------PDGCFYLRVVGVSNSPRYEEGDYILVNPNYQVCDLIADDLIVVRNNS 165

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
                K L+    +   L +LN  +  + +E  D +E +  ++
Sbjct: 166 D-ATFKKLVIESDQRKYLQALNPNFHPNIIEFEDGMELVGLVI 207


>gi|312138044|ref|YP_004005380.1| lexa repressor [Rhodococcus equi 103S]
 gi|311887383|emb|CBH46695.1| LexA repressor [Rhodococcus equi 103S]
          Length = 212

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 29/218 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++I   I    + H   PS   +A   GL   ++ +K  +   +               
Sbjct: 14  QQRILLTIRDWVDGHGCPPSTREIADAVGLRSTSTVSKHLKALEDK-------------- 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                       L      T     +        P        + +    +    + +P 
Sbjct: 60  GFLRRGGSMTRQLDVRPFLTGSAPGRSTENTVTVPVVGDIAAGAPILAEEHADEMLSLPR 119

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                             + +  SM+      GD +++    + + G+ +      G+  
Sbjct: 120 ELVGS-------GTVFALRVRGESMVDAAICDGDTVVVRRQEEAHSGEIVAAMID-GEAT 171

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            KVL  R    + L   N  Y    ++  +   + +++
Sbjct: 172 VKVLRRR-NGHVLLEPRNPAYE--VIDGDEAVILGKVV 206


>gi|256113706|ref|ZP_05454510.1| LexA repressor [Brucella melitensis bv. 3 str. Ether]
 gi|265995060|ref|ZP_06107617.1| LexA repressor [Brucella melitensis bv. 3 str. Ether]
 gi|262766173|gb|EEZ11962.1| LexA repressor [Brucella melitensis bv. 3 str. Ether]
          Length = 240

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105
            + L            L           E  +  +                         
Sbjct: 61  ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
            G    G   + +                 +    + +  SM+      GD +I+     
Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N G+ ++      +   K        SI L + N  Y         +    +++
Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRLGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234


>gi|260664377|ref|ZP_05865230.1| LexA repressor [Lactobacillus jensenii SJ-7A-US]
 gi|260562263|gb|EEX28232.1| LexA repressor [Lactobacillus jensenii SJ-7A-US]
          Length = 208

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 63/223 (28%), Gaps = 31/223 (13%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + K++   I+ + ++  ++ S L+ K G+  +  +           R        K  
Sbjct: 10  MRNSKEVIAYINELRKQQKMSISELSEKVGMAKSGVSLYFNG-----KREFPINHAEKFA 64

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A +  +  LL +                     P          +    N      +  
Sbjct: 65  KALHTNVFDLLGVGDDSMIK-------------VPVLGEIACGQPILAEPNIEGYRYI-- 109

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                       +     K +  SM+P   +   ++++    V   D + +         
Sbjct: 110 ------NCRDQSSNLFFLKAKGDSMVPTIPENSYVLIDRDESVEDNDIVAVLID-NSATL 162

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWAS 222
           K      G ++ L   N  +P   +  ++    + + + +  S
Sbjct: 163 KRYHK-NGNTVTLTGDNPNFPPIVLTSTEDAIAQILGKAIQVS 204


>gi|261406209|ref|YP_003242450.1| LexA family transcriptional repressor [Paenibacillus sp. Y412MC10]
 gi|329930854|ref|ZP_08284253.1| repressor LexA [Paenibacillus sp. HGF5]
 gi|261282672|gb|ACX64643.1| transcriptional repressor, LexA family [Paenibacillus sp. Y412MC10]
 gi|328934556|gb|EGG31061.1| repressor LexA [Paenibacillus sp. HGF5]
          Length = 208

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 32/226 (14%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M+  S ++  I E I          PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +   +  +L                     P          +    N 
Sbjct: 61  TK--PRAIELLGQEESESANLFTHTIAR-------------VPVVGKVTAGVPITAMENI 105

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P+        Y    +         SM       GD +I+      + GD ++ 
Sbjct: 106 EDYFPLPQH-------YVGDDKVFMLSVVGDSMIEAGIHSGDYVIVRQQQTADNGDIVVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +   + L   N  Y    +    +  + +++
Sbjct: 159 MTEEDEATVKTFYKEKD-HVRLQPENPTYEPLRLNH--VTILGKVI 201


>gi|299822660|ref|ZP_07054546.1| repressor lexA [Listeria grayi DSM 20601]
 gi|299816189|gb|EFI83427.1| repressor lexA [Listeria grayi DSM 20601]
          Length = 204

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 68/220 (30%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPSTESIFK 60
            + I++ I    +     PS   +    GL   ++ +   +R   +G   R P+     +
Sbjct: 7   QQDIYDFIKAQVKAKGYPPSVREIGEAVGLASSSTVHGHLERLETKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E +IP     P        + +    N      +
Sbjct: 67  IL--------------------SLEDEIDIPSTVAVPIIGKVTAGTPITAIENVEEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +      + ++     +    SM+      GD +I+      N G+ ++      +
Sbjct: 107 PEHLT------SGESNVFMLEIDGESMMKAGILDGDRVIVRQQSNANNGEIVVAMTEDNE 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +     L   N  +    ++   +  + +++
Sbjct: 161 ATCKRFYKEQD-HFRLQPENDAFEPIILQ--QVSILGKVI 197


>gi|327478517|sp|Q7TY15|LEXA_MYCBO RecName: Full=LexA repressor
 gi|327478518|sp|A1KM58|LEXA_MYCBP RecName: Full=LexA repressor
 gi|327478519|sp|C1AFH9|LEXA_MYCBT RecName: Full=LexA repressor
          Length = 236

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 20/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I + I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 31  QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 90

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   L  +    G     +    P+L    +G                +   +P  
Sbjct: 91  VRGADDAALPPVTEVAGSDALPEPTFAPVLGRIAAGGPI------LAEEAVEDVFPLPRE 144

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +      K    SM       GD +++      + GD +      G+   
Sbjct: 145 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 196

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G  + LM  N  +       +D   + +++
Sbjct: 197 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 230


>gi|49186482|ref|YP_029735.1| LexA repressor [Bacillus anthracis str. Sterne]
 gi|49180409|gb|AAT55785.1| LexA repressor [Bacillus anthracis str. Sterne]
          Length = 269

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 64  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 123

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 124 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 165

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 166 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 219

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 220 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 262


>gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B]
 gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B]
          Length = 244

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 71/250 (28%), Gaps = 46/250 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT   H  I   I  + +   LT   LA   G+   S ++ +      +        + K
Sbjct: 1   MTEAQH--IGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRS--KPDANKLVLLAK 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94
            L    E +             +    +                          ++PL+ 
Sbjct: 57  ELHTAVEYLLNGDTNDAMSFADSAASRRRLRGGTKQSASIVDNSESNITEWPVGKLPLIS 116

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----- 149
           +  +G          P G+  + +  P         +   +     +    SM       
Sbjct: 117 WVQAGDWSEIVDNFQP-GDAEDWIACP---------FPSGSHGFVLRVVGDSMYNPSGDM 166

Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            +R+GD + +N   +      ++ +        K L+        L +LN  +P   + +
Sbjct: 167 SFREGDFISVNPDREAQHRSLVIARHNGEKATFKQLLIDENDGPMLFALNPNWPKRYIAL 226

Query: 210 S-DIEWIARI 218
             D E I  +
Sbjct: 227 DKDTEIIGVV 236


>gi|295111675|emb|CBL28425.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Synergistetes bacterium SGP1]
          Length = 233

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST---ES 57
           MT  +   I   I    +   +    LA + G+ P +  + +   I  R+   S    E 
Sbjct: 1   MTEGAEAGIGARIMARRKALGMKRPELAERLGVKPNTLYRYEIGSIGIRDSMKSRIAKEL 60

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
              +    + T     +    +        +    +    + +G  F+      G +   
Sbjct: 61  GVSLAYLVSGTAEVGRERGSEETPEPVVPPQVYLPILDQEACAGSGFNWSDVRAGARK-W 119

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           +  P + +         T+    K +  SM+    + G ++++N   +V  GD   ++  
Sbjct: 120 MPWPTLETGGP---VGPTKPYFVKVEGDSMIGANIQDGCLILVNPNTEVRSGDIAYVRWN 176

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL-W 220
                 K +I      ++L   N  +    ++  ++E    + +++ W
Sbjct: 177 -DRCSVKGIIFYNDGRVELRPANKDFSSIWIQRDEVEFLTILGKVVRW 223


>gi|293418613|ref|ZP_06661048.1| regulatory protein CI bacteriophage origin [Escherichia coli B088]
 gi|291325141|gb|EFE64556.1| regulatory protein CI bacteriophage origin [Escherichia coli B088]
          Length = 251

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        LT   L    G+   +  K +            T  I +I  A      
Sbjct: 29  ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +   +T +  +                       G         E+       
Sbjct: 83  WLSSGVGNMSDSTVQPIQTTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139

Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +                    +  SM      GD+L ++  ++   GD +          
Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
            K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 200 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240


>gi|218886357|ref|YP_002435678.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757311|gb|ACL08210.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 236

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 27/232 (11%)

Query: 10  WEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +EAI +R+ +   +   S LAR  G+ P S N +++ G      W     +      T  
Sbjct: 7   FEAIFERLMKAAGVRNDSELARALGITPQSVNGARKRGEVP-PAW-----VQSYAERTGT 60

Query: 68  TICQLLDLPFSDGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVFPTGNKWNTV- 118
           +   L           + +             +                   GN    V 
Sbjct: 61  SSDWLFFGRGPMRVEEQAQAAPAGKSAFGPETVTCADCELVMVPMVEARLSAGNGSFEVG 120

Query: 119 -GVPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
             V    +            +     +    SM P    GD+++++ + +     ++   
Sbjct: 121 ADVERRYAFRTDFLLRKGSPSSMVLMRVDGDSMEPYVLNGDVVLVDQSQRDPRPGKVYAV 180

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221
                +  K +++     + L S N  Y    ++        +  I R +W 
Sbjct: 181 GVEELVYLK-VVNASPGKLVLTSYNASYAPLEIDARGDLADGVRIIGRAVWV 231


>gi|313682117|ref|YP_004059855.1| phage repressor [Sulfuricurvum kujiense DSM 16994]
 gi|313154977|gb|ADR33655.1| putative phage repressor [Sulfuricurvum kujiense DSM 16994]
          Length = 219

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 25/228 (10%)

Query: 1   MTSFSHKKIWEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M +FS   I E I  +         +    +A    +   +F   K+     RN+ P TE
Sbjct: 1   MKTFS--DIVETIKDIVSSEFPEKKVFDKDVAELLDISQMNFATMKK-----RNKIPFTE 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +      +      L +           +   +       + +GG         G    
Sbjct: 54  LLDFCAKRSIAINWLLYNQSPESLIEPTNRFYMVRYFSSVNASAGG---------GADNE 104

Query: 117 TVGVPEIRSPHNGIYAIQTQ-----DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            +    +    N + ++  +              SM P +   DI+ +N +        +
Sbjct: 105 ELDYEPLMLEDNFVLSLGGEKELRHIEAINVSGDSMEPSFSYNDIIFINRSKTDISRGGI 164

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                   +  K +  R    +D++S N  YP       ++E I R++
Sbjct: 165 FTIRTEHGLFIKRIQVRIDGKLDIISDNKDYPTYVARRDEVEVIGRVV 212


>gi|193067699|ref|ZP_03048666.1| putative repressor protein [Escherichia coli E110019]
 gi|192959111|gb|EDV89547.1| putative repressor protein [Escherichia coli E110019]
          Length = 251

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        LT   L    G+   +  K +            T  I +I  A      
Sbjct: 29  ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +   +T +  +                       G         E+       
Sbjct: 83  WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139

Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +                    +  SM      GD+L ++  ++   GD +          
Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
            K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 200 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240


>gi|170718159|ref|YP_001785187.1| phage repressor [Haemophilus somnus 2336]
 gi|168826288|gb|ACA31659.1| putative phage repressor [Haemophilus somnus 2336]
          Length = 235

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 19/224 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    ER NLT   LA+   +  ++    +        R P    I  I      T
Sbjct: 11  IGNRIREQRERLNLTRPELAKAVDVSLSALQGWE-----MNEREPQASMIITIANELGVT 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---GNKWNTVGVPEIRS 125
              LL       + T ++  E                S +  +   G+    V  P+ + 
Sbjct: 66  PNYLLTGENDQPKKTIERAVEKVKDLTENVVIMIASYSSINVSAGFGSFNEGVTKPDGKE 125

Query: 126 PHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGD 179
           P+             +     T   SM P    GD L+++       G D++ +     +
Sbjct: 126 PYADSLLQSLRVNPDKCAVFWTNGRSMEPTINNGDQLLVDLNRNQIKGDDKIYLIQHGEN 185

Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARIL 219
           I  K +  +    ++L+S N   YP   +   +   ++ I R++
Sbjct: 186 IWVKRVKMKWDG-VELVSDNKDEYPPIAISDEEAQNLQIIGRVV 228


>gi|331672656|ref|ZP_08373445.1| transcriptional activator-regulatory protein [Escherichia coli
           TA280]
 gi|331070299|gb|EGI41665.1| transcriptional activator-regulatory protein [Escherichia coli
           TA280]
          Length = 251

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 23/222 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        LT   L    G+   +  K +            T  I +I  A      
Sbjct: 29  ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAE 82

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +   +T +  +                       G         E+       
Sbjct: 83  WLSSGVGNMSDSTVQPIQSTV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYS 139

Query: 131 YAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +                    +  SM      GD+L ++  ++   GD +          
Sbjct: 140 FDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAH 199

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
            K L   +   + ++S N  Y     +E  +   +    +++
Sbjct: 200 VKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 240


>gi|66396213|ref|YP_240570.1| ORF022 [Staphylococcus phage 29]
 gi|62636630|gb|AAX91741.1| ORF022 [Staphylococcus phage 29]
          Length = 209

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 72/221 (32%), Gaps = 22/221 (9%)

Query: 3   SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              +K+I    I R+ + +N+  + L+R   +  T+ +       +   R    E + K 
Sbjct: 1   MLGNKEIMAKNISRLMKENNVDRNKLSRDLKISYTTLSDWIN--AKTYPRIDKIEMLAKY 58

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                 ++ +            +  + +   +   P  S       ++   N  + +   
Sbjct: 59  FGVEKSSLVE---------SPNKIVQLDTLPVKKIPVVSKISAGMPIYTEENLVDYIYFS 109

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                         ++   +    SM  L+ +GD++++     V  G   ++     +  
Sbjct: 110 TKNLNP------DKEEFGLQVSGDSMNELFDEGDVVVVEKDSIVENGQLGVVMINGYNGT 163

Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDTVEMSD-IEWIARIL 219
            K +    G  I L+    N  +        D ++ + R++
Sbjct: 164 VKRI-RYNGDQIILIPESNNPNHYPQVYGKDDEVKIVGRVV 203


>gi|167970057|ref|ZP_02552334.1| LexA repressor [Mycobacterium tuberculosis H37Ra]
 gi|215404685|ref|ZP_03416866.1| LexA repressor [Mycobacterium tuberculosis 02_1987]
 gi|215412526|ref|ZP_03421260.1| LexA repressor [Mycobacterium tuberculosis 94_M4241A]
 gi|215431659|ref|ZP_03429578.1| LexA repressor [Mycobacterium tuberculosis EAS054]
 gi|215446973|ref|ZP_03433725.1| LexA repressor [Mycobacterium tuberculosis T85]
 gi|218754456|ref|ZP_03533252.1| LexA repressor [Mycobacterium tuberculosis GM 1503]
 gi|219558729|ref|ZP_03537805.1| LexA repressor [Mycobacterium tuberculosis T17]
 gi|253798198|ref|YP_003031199.1| repressor lexA [Mycobacterium tuberculosis KZN 1435]
 gi|254232822|ref|ZP_04926149.1| repressor lexA [Mycobacterium tuberculosis C]
 gi|254365377|ref|ZP_04981422.1| repressor lexA [Mycobacterium tuberculosis str. Haarlem]
 gi|254551776|ref|ZP_05142223.1| LexA repressor [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187737|ref|ZP_05765211.1| LexA repressor [Mycobacterium tuberculosis CPHL_A]
 gi|260201845|ref|ZP_05769336.1| LexA repressor [Mycobacterium tuberculosis T46]
 gi|260206029|ref|ZP_05773520.1| LexA repressor [Mycobacterium tuberculosis K85]
 gi|294994188|ref|ZP_06799879.1| LexA repressor [Mycobacterium tuberculosis 210]
 gi|297635328|ref|ZP_06953108.1| LexA repressor [Mycobacterium tuberculosis KZN 4207]
 gi|297732324|ref|ZP_06961442.1| LexA repressor [Mycobacterium tuberculosis KZN R506]
 gi|306776999|ref|ZP_07415336.1| repressor lexA [Mycobacterium tuberculosis SUMu001]
 gi|306780902|ref|ZP_07419239.1| repressor lexA [Mycobacterium tuberculosis SUMu002]
 gi|306785527|ref|ZP_07423849.1| repressor lexA [Mycobacterium tuberculosis SUMu003]
 gi|306790123|ref|ZP_07428445.1| repressor lexA [Mycobacterium tuberculosis SUMu004]
 gi|306794207|ref|ZP_07432509.1| repressor lexA [Mycobacterium tuberculosis SUMu005]
 gi|306798625|ref|ZP_07436927.1| repressor lexA [Mycobacterium tuberculosis SUMu006]
 gi|306807479|ref|ZP_07444147.1| repressor lexA [Mycobacterium tuberculosis SUMu007]
 gi|306968779|ref|ZP_07481440.1| repressor lexA [Mycobacterium tuberculosis SUMu009]
 gi|306973114|ref|ZP_07485775.1| repressor lexA [Mycobacterium tuberculosis SUMu010]
 gi|307080823|ref|ZP_07489993.1| repressor lexA [Mycobacterium tuberculosis SUMu011]
 gi|307085415|ref|ZP_07494528.1| repressor lexA [Mycobacterium tuberculosis SUMu012]
 gi|313659657|ref|ZP_07816537.1| LexA repressor [Mycobacterium tuberculosis KZN V2475]
 gi|327478521|sp|A5U672|LEXA_MYCTA RecName: Full=LexA repressor
 gi|327478522|sp|Q50765|LEXA_MYCTU RecName: Full=LexA repressor
 gi|124601881|gb|EAY60891.1| repressor lexA [Mycobacterium tuberculosis C]
 gi|134150890|gb|EBA42935.1| repressor lexA [Mycobacterium tuberculosis str. Haarlem]
 gi|253319701|gb|ACT24304.1| repressor lexA [Mycobacterium tuberculosis KZN 1435]
 gi|308214656|gb|EFO74055.1| repressor lexA [Mycobacterium tuberculosis SUMu001]
 gi|308326302|gb|EFP15153.1| repressor lexA [Mycobacterium tuberculosis SUMu002]
 gi|308329831|gb|EFP18682.1| repressor lexA [Mycobacterium tuberculosis SUMu003]
 gi|308333474|gb|EFP22325.1| repressor lexA [Mycobacterium tuberculosis SUMu004]
 gi|308337469|gb|EFP26320.1| repressor lexA [Mycobacterium tuberculosis SUMu005]
 gi|308341141|gb|EFP29992.1| repressor lexA [Mycobacterium tuberculosis SUMu006]
 gi|308346074|gb|EFP34925.1| repressor lexA [Mycobacterium tuberculosis SUMu007]
 gi|308353666|gb|EFP42517.1| repressor lexA [Mycobacterium tuberculosis SUMu009]
 gi|308357513|gb|EFP46364.1| repressor lexA [Mycobacterium tuberculosis SUMu010]
 gi|308361466|gb|EFP50317.1| repressor lexA [Mycobacterium tuberculosis SUMu011]
 gi|308365061|gb|EFP53912.1| repressor lexA [Mycobacterium tuberculosis SUMu012]
 gi|323718714|gb|EGB27876.1| repressor lexA [Mycobacterium tuberculosis CDC1551A]
          Length = 236

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I + I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 31  QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 90

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   L  +    G     +   +P+L    +G                +   +P  
Sbjct: 91  VRGADDAALPPVTEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 144

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +      K    SM       GD +++      + GD +      G+   
Sbjct: 145 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 196

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G  + LM  N  +       +D   + +++
Sbjct: 197 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 230


>gi|296171811|ref|ZP_06852925.1| SOS regulatory protein LexA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893947|gb|EFG73715.1| SOS regulatory protein LexA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 231

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 20/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 26  QRTILNVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVD 85

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                           G     +   +P+L    +G                +   +P  
Sbjct: 86  VRGADDEVAAPATEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 139

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +      K    SM       GD +++      + GD +      G+   
Sbjct: 140 LVG-------EGTLFLLKVVGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMLD-GEATV 191

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G  + LM  N  +       ++   + +++
Sbjct: 192 KTFKR-AGGQVWLMPHNPAFDPI--PGNEATVLGKVV 225


>gi|240080373|ref|ZP_04724916.1| putative CI protein [Neisseria gonorrhoeae FA19]
 gi|254494046|ref|ZP_05107217.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|226513086|gb|EEH62431.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|319411131|emb|CBY91536.1| Repressor protein CI [Neisseria meningitidis WUE 2594]
          Length = 232

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 19/228 (8%)

Query: 11  EAIDRM-AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  + A+R N   +  +R     P   N+         +      +  +I        
Sbjct: 5   DRIKNLIADRFNGNQAEFSRAINKAPAQINQWLNGYRNIGD---GVAAQIEIALGLPRGW 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPS--------GSGGFFDSGVFPTGNKW-NTVG- 119
               D P     + +     I  +    S            F+       GN + + +  
Sbjct: 62  VDGNDKPGIPVDSIKSNATVIGSVDAWDSKTPLSDDDCEVPFYKDVCLSAGNGFSDEIED 121

Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                +   +S                    SM P++  G  L +N+A ++    ++   
Sbjct: 122 YNGYKLRFSKSTLRRHGINPDDVVCVSADGDSMEPVFPDGATLGINTADKMIKDGKIYAI 181

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             +G +  K+L       + + S N  Y  +T  +  +  I R+ W S
Sbjct: 182 NHSGLLRTKILQKLPDNQVRIKSYNPEYKDETASLDSLTVIGRVFWWS 229


>gi|187929409|ref|YP_001899896.1| putative phage repressor [Ralstonia pickettii 12J]
 gi|187726299|gb|ACD27464.1| putative phage repressor [Ralstonia pickettii 12J]
          Length = 302

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 65/236 (27%), Gaps = 27/236 (11%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES-----IFKILAATNETI 69
               +  ++   LA+KA L  ++  + +R    G     +        +  +    +   
Sbjct: 65  ARRTQLEMSQEALAKKARLSQSTIAQIERGRNRGSKYVVALADALLVPVRWLADGGDMPP 124

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD---------SGVFPTGNKWNTVGV 120
                      +T  +   +  +     + S   +                G   +    
Sbjct: 125 RPSEVEGLFVSQTEAEDLVDRGVEELLQARSDDAYWKGTVAIPQFDAGGSMGGGIDLPDQ 184

Query: 121 P----------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           P          E    +                  SM PL+  GD L+L+  +     D 
Sbjct: 185 PGLIQNLRVTKEWLDFNVRSCTSPKNLCVVTGFGDSMRPLFNPGDPLLLDRGVITVEIDA 244

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL--WASQ 223
           +       +   K L    G  +  +S N  Y   T+    D E   R+L  W S+
Sbjct: 245 VYFFRIGKEGFIKRLQRVPGNGLIAISENKAYREWTITPDMDFEVFGRVLKAWRSE 300


>gi|195661226|ref|YP_002117694.1| CI-like repressor [Lactobacillus phage Lrm1]
 gi|166200940|gb|ABY84327.1| CI-like repressor [Lactobacillus phage Lrm1]
          Length = 224

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 21/228 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++ +I + ++ +  R  ++ S LAR+  +  +S ++          R      + K  
Sbjct: 1   MKTNDEIIKTLNDLRNREGISISELARRVDMAKSSVSRYFNGT-----REFPLNYVDKFA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           +A   T  + L           KK       Y P   S G   +    T +   T+ +P+
Sbjct: 56  SAL-HTTPESLIGVSPVDSFKVKKLNVHSYPYIPAEISAGILCNVDPLTSDDVETIQLPD 114

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGD 179
                 G YA  +          SM      G ++ +     +     GD ++       
Sbjct: 115 S---VMGRYAGDSSILMMHVNGESMNQTIPDGSLIAVKQYSDIQDLNDGDIVVFADDGDY 171

Query: 180 IVAKVLISRRGRSID-LMSLNCC--YPVD-----TVEMSDIEWIARIL 219
              K   + R + I   +  +    +         +E  +I+ I R++
Sbjct: 172 A-VKYFYNDRQKQIVTFIPDSTDKRFSPIMYTYEDLEEENIKIIGRVV 218


>gi|315646590|ref|ZP_07899708.1| transcriptional repressor, LexA family protein [Paenibacillus
           vortex V453]
 gi|315278233|gb|EFU41553.1| transcriptional repressor, LexA family protein [Paenibacillus
           vortex V453]
          Length = 208

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 61/226 (26%), Gaps = 32/226 (14%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M+  S ++  I E I          PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +      +L                     P          +    N 
Sbjct: 61  TK--PRAIELLGQEESDSANLFTHTIAR-------------VPVVGKVTAGVPITAMENI 105

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P+        Y    +         SM       GD +I+      + GD ++ 
Sbjct: 106 EDYFPLPQH-------YVGDDKVFMLSVVGDSMIEAGIHSGDYVIVRQQQTADNGDIVVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +   + L   N  Y    +    +  + +++
Sbjct: 159 MTEEDEATVKTFYKEKD-HVRLQPENPTYEPLRLNH--VTILGKVI 201


>gi|52141849|ref|YP_084980.1| LexA repressor [Bacillus cereus E33L]
 gi|51975318|gb|AAU16868.1| LexA repressor (SOS response repressor) [Bacillus cereus E33L]
          Length = 269

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 64  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 123

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 124 TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 165

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 166 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 219

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 220 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 262


>gi|153000591|ref|YP_001366272.1| putative phage repressor [Shewanella baltica OS185]
 gi|151365209|gb|ABS08209.1| putative phage repressor [Shewanella baltica OS185]
          Length = 247

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 62/213 (29%), Gaps = 21/213 (9%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           +    A K G+   +     + G       P  ++  +I      +I  L          
Sbjct: 35  SIREFAIKIGVSEGTLRNLIKGG------EPKLDTAIRIAEEAGVSIRWLATGNGPKYPN 88

Query: 83  TEKKEKEIPLLYFPPSGSG------GFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA-- 132
            +  +     + +                  V  TG+    +  GV    S         
Sbjct: 89  RQLDDISQEGIVYVHQDQFNEEYFLIEGYDVVVSTGHGAFNDETGVRRRLSFRKNWLKYR 148

Query: 133 --IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                       +  SM P    GD L+++ +        + +     D+ AK L     
Sbjct: 149 GLKPENLKVVYAKGNSMEPAIHSGDSLLVDISKTTLEDGCIFVLRLGDDLYAKRLQKLFD 208

Query: 191 RSIDLMSLNCCYPVDTVEMSD---IEWIARILW 220
             I+++S N  Y    V   +   ++ I +++W
Sbjct: 209 GGIEILSDNKEYKSQIVSAGELPMLQIIGKVVW 241


>gi|261495314|ref|ZP_05991765.1| putative LexA family transcriptional regulator/S24 family protease
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308991|gb|EEY10243.1| putative LexA family transcriptional regulator/S24 family protease
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 239

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 22/213 (10%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             S  AR  G+   S ++  +   +     PS  ++ KI   +N ++  L     S  ++
Sbjct: 26  NYSEFARAVGVAQASLSRWVKGEAD-----PSRSNLVKIAEVSNVSLEWLATGKESKPQS 80

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPT-------GNKWNTVGVPEIRSPHNGIYAIQ- 134
                                     F T       G+    V  P+ + P+        
Sbjct: 81  ENTSIVAREFERLEKMADDIVSMINGFSTINVSAGFGSFNEGVTKPDGQEPYADSLLQSL 140

Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRR 189
                         TSM P    GD ++++ +  +    D++ +      +  K +  + 
Sbjct: 141 GVKAHNCGVFWANGTSMHPTIADGDQMLVDFSKREPRGDDKIYLVQNGESVWVKRI-RKE 199

Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
              I+L+S N  Y    +   +   ++ I +++
Sbjct: 200 WDYIELISDNESYRPIQITAEEAQNLQIIGQVV 232


>gi|332853630|ref|ZP_08434860.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332870803|ref|ZP_08439453.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
 gi|332728454|gb|EGJ59828.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332732013|gb|EGJ63290.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
          Length = 227

 Score = 96.0 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 13/202 (6%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            LAR  G+ P S +        G+++    E++ K           L     S      +
Sbjct: 24  DLARAVGVKPPSVSDWL----SGKSKTMEGENLLKASKFLGVNPNWLATGNGSPTNNNIE 79

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAIQTQDTRHKT 142
            ++   +++   +             G     V     P   +  + I +          
Sbjct: 80  DDQLSNVIFRDLNLHKIPILD-FVQAGFWHEVVYDGTTPHSYTYTDYISSNPEAIFSVIV 138

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-----IDLMS 197
           Q  SM P +++GD+LI++++I    G  ++ +  + +   K               +L+ 
Sbjct: 139 QGNSMEPDFKEGDMLIVDASIAPKPGSYVIAQNGSHEATFKKYRVLSHDEYGRDIFELIP 198

Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
           LN  +P+ +    +I  I  ++
Sbjct: 199 LNKDFPILSSITHEIRIIGVVV 220


>gi|238021321|ref|ZP_04601747.1| hypothetical protein GCWU000324_01220 [Kingella oralis ATCC 51147]
 gi|237868301|gb|EEP69307.1| hypothetical protein GCWU000324_01220 [Kingella oralis ATCC 51147]
          Length = 226

 Score = 96.0 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 63/203 (31%), Gaps = 19/203 (9%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           + S LAR  G   +  +  +R            E   KI   T  ++  L+         
Sbjct: 24  SDSDLARWLGFATSVISGYRRRETVP------LEQCIKIAEQTGVSLDWLILGKGDPKPQ 77

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN------TVGVPEIRSPHNGIYAIQTQ 136
            + +                         G   +         +P  R   N        
Sbjct: 78  HQPQSAVQDY--DDQDAVWVPLYDVYASAGGGEDVWGEEIEQYIPFSRVWLNQKNLHSKN 135

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
            +  K +  SM P    GD++++N+A QV  GD + +      +  K L +    S+ + 
Sbjct: 136 LSCVKVRGDSMEPTLNNGDVILVNTARQV--GDGVFVVRIGSLLRVKRLQTLINGSLKIS 193

Query: 197 SLNCCYPVDTVEM---SDIEWIA 216
           S N  Y  +T+     SD   I 
Sbjct: 194 SDNPIYESETLNPKEDSDFAIIG 216


>gi|23502022|ref|NP_698149.1| LexA repressor [Brucella suis 1330]
 gi|62290057|ref|YP_221850.1| LexA repressor [Brucella abortus bv. 1 str. 9-941]
 gi|82699984|ref|YP_414558.1| LexA repressor [Brucella melitensis biovar Abortus 2308]
 gi|148558946|ref|YP_001259065.1| LexA repressor [Brucella ovis ATCC 25840]
 gi|161619096|ref|YP_001592983.1| LexA repressor [Brucella canis ATCC 23365]
 gi|163843409|ref|YP_001627813.1| LexA repressor [Brucella suis ATCC 23445]
 gi|189024297|ref|YP_001935065.1| LexA repressor [Brucella abortus S19]
 gi|225627613|ref|ZP_03785650.1| LexA repressor [Brucella ceti str. Cudo]
 gi|225852643|ref|YP_002732876.1| LexA repressor [Brucella melitensis ATCC 23457]
 gi|237815566|ref|ZP_04594563.1| LexA repressor [Brucella abortus str. 2308 A]
 gi|254689369|ref|ZP_05152623.1| LexA repressor [Brucella abortus bv. 6 str. 870]
 gi|254693853|ref|ZP_05155681.1| LexA repressor [Brucella abortus bv. 3 str. Tulya]
 gi|254697502|ref|ZP_05159330.1| LexA repressor [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701886|ref|ZP_05163714.1| LexA repressor [Brucella suis bv. 5 str. 513]
 gi|254704432|ref|ZP_05166260.1| LexA repressor [Brucella suis bv. 3 str. 686]
 gi|254706672|ref|ZP_05168500.1| LexA repressor [Brucella pinnipedialis M163/99/10]
 gi|254714217|ref|ZP_05176028.1| LexA repressor [Brucella ceti M644/93/1]
 gi|254717653|ref|ZP_05179464.1| LexA repressor [Brucella ceti M13/05/1]
 gi|254730399|ref|ZP_05188977.1| LexA repressor [Brucella abortus bv. 4 str. 292]
 gi|256159873|ref|ZP_05457602.1| LexA repressor [Brucella ceti M490/95/1]
 gi|256255115|ref|ZP_05460651.1| LexA repressor [Brucella ceti B1/94]
 gi|256257615|ref|ZP_05463151.1| LexA repressor [Brucella abortus bv. 9 str. C68]
 gi|256263864|ref|ZP_05466396.1| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9]
 gi|260168846|ref|ZP_05755657.1| LexA repressor [Brucella sp. F5/99]
 gi|260546609|ref|ZP_05822348.1| peptidase family S24 [Brucella abortus NCTC 8038]
 gi|260566321|ref|ZP_05836791.1| peptidase family S24 [Brucella suis bv. 4 str. 40]
 gi|260754886|ref|ZP_05867234.1| LexA repressor [Brucella abortus bv. 6 str. 870]
 gi|260758103|ref|ZP_05870451.1| LexA repressor [Brucella abortus bv. 4 str. 292]
 gi|260761927|ref|ZP_05874270.1| LexA repressor [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883898|ref|ZP_05895512.1| LexA repressor [Brucella abortus bv. 9 str. C68]
 gi|261214138|ref|ZP_05928419.1| LexA repressor [Brucella abortus bv. 3 str. Tulya]
 gi|261219492|ref|ZP_05933773.1| LexA repressor [Brucella ceti M13/05/1]
 gi|261222310|ref|ZP_05936591.1| LexA repressor [Brucella ceti B1/94]
 gi|261314133|ref|ZP_05953330.1| LexA repressor [Brucella pinnipedialis M163/99/10]
 gi|261321987|ref|ZP_05961184.1| LexA repressor [Brucella ceti M644/93/1]
 gi|261752449|ref|ZP_05996158.1| LexA repressor [Brucella suis bv. 5 str. 513]
 gi|261755109|ref|ZP_05998818.1| LexA repressor [Brucella suis bv. 3 str. 686]
 gi|261758334|ref|ZP_06002043.1| peptidase family S24 [Brucella sp. F5/99]
 gi|265998274|ref|ZP_06110831.1| LexA repressor [Brucella ceti M490/95/1]
 gi|294852484|ref|ZP_06793157.1| LexA repressor [Brucella sp. NVSL 07-0026]
 gi|297248457|ref|ZP_06932175.1| LexA repressor [Brucella abortus bv. 5 str. B3196]
 gi|29427806|sp|Q8G0F1|LEXA_BRUSU RecName: Full=LexA repressor
 gi|71648699|sp|Q57CZ5|LEXA_BRUAB RecName: Full=LexA repressor
 gi|123727397|sp|Q2YRR1|LEXA_BRUA2 RecName: Full=LexA repressor
 gi|166224557|sp|A5VQR8|LEXA_BRUO2 RecName: Full=LexA repressor
 gi|189046530|sp|A9M5F7|LEXA_BRUC2 RecName: Full=LexA repressor
 gi|189046531|sp|B0CGU2|LEXA_BRUSI RecName: Full=LexA repressor
 gi|229621201|sp|B2S5Z4|LEXA_BRUA1 RecName: Full=LexA repressor
 gi|254809090|sp|C0RJB4|LEXA_BRUMB RecName: Full=LexA repressor
 gi|23347975|gb|AAN30064.1| LexA repressor [Brucella suis 1330]
 gi|62196189|gb|AAX74489.1| LexA, LexA repressor [Brucella abortus bv. 1 str. 9-941]
 gi|82616085|emb|CAJ11123.1| Peptidase family S24:Peptidase S24, C-terminal:LexA DNA-binding
           region [Brucella melitensis biovar Abortus 2308]
 gi|148370203|gb|ABQ60182.1| LexA repressor [Brucella ovis ATCC 25840]
 gi|161335907|gb|ABX62212.1| LexA repressor [Brucella canis ATCC 23365]
 gi|163674132|gb|ABY38243.1| LexA repressor [Brucella suis ATCC 23445]
 gi|189019869|gb|ACD72591.1| Peptidase family S24 [Brucella abortus S19]
 gi|225617618|gb|EEH14663.1| LexA repressor [Brucella ceti str. Cudo]
 gi|225641008|gb|ACO00922.1| LexA repressor [Brucella melitensis ATCC 23457]
 gi|237788864|gb|EEP63075.1| LexA repressor [Brucella abortus str. 2308 A]
 gi|260095659|gb|EEW79536.1| peptidase family S24 [Brucella abortus NCTC 8038]
 gi|260155839|gb|EEW90919.1| peptidase family S24 [Brucella suis bv. 4 str. 40]
 gi|260668421|gb|EEX55361.1| LexA repressor [Brucella abortus bv. 4 str. 292]
 gi|260672359|gb|EEX59180.1| LexA repressor [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674994|gb|EEX61815.1| LexA repressor [Brucella abortus bv. 6 str. 870]
 gi|260873426|gb|EEX80495.1| LexA repressor [Brucella abortus bv. 9 str. C68]
 gi|260915745|gb|EEX82606.1| LexA repressor [Brucella abortus bv. 3 str. Tulya]
 gi|260920894|gb|EEX87547.1| LexA repressor [Brucella ceti B1/94]
 gi|260924581|gb|EEX91149.1| LexA repressor [Brucella ceti M13/05/1]
 gi|261294677|gb|EEX98173.1| LexA repressor [Brucella ceti M644/93/1]
 gi|261303159|gb|EEY06656.1| LexA repressor [Brucella pinnipedialis M163/99/10]
 gi|261738318|gb|EEY26314.1| peptidase family S24 [Brucella sp. F5/99]
 gi|261742202|gb|EEY30128.1| LexA repressor [Brucella suis bv. 5 str. 513]
 gi|261744862|gb|EEY32788.1| LexA repressor [Brucella suis bv. 3 str. 686]
 gi|262552742|gb|EEZ08732.1| LexA repressor [Brucella ceti M490/95/1]
 gi|263093995|gb|EEZ17929.1| peptidase family S24 [Brucella melitensis bv. 2 str. 63/9]
 gi|294821073|gb|EFG38072.1| LexA repressor [Brucella sp. NVSL 07-0026]
 gi|297175626|gb|EFH34973.1| LexA repressor [Brucella abortus bv. 5 str. B3196]
 gi|326409162|gb|ADZ66227.1| Peptidase family S24 [Brucella melitensis M28]
 gi|326538872|gb|ADZ87087.1| LexA repressor [Brucella melitensis M5-90]
          Length = 240

 Score = 96.0 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105
            + L            L           E  +  +                         
Sbjct: 61  ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
            G    G   + +                 +    + +  SM+      GD +I+     
Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N G+ ++      +   K        SI L + N  Y         +    +++
Sbjct: 181 ANPGEIVVALVDEEEATLKRFRREGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234


>gi|157734756|dbj|BAF80762.1| prophage repressor [Enterobacteria phage P22]
          Length = 216

 Score = 96.0 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 28/220 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    ++  +  + L +  G+   + ++ +R   E     P+ ES+  +  A   + 
Sbjct: 7   GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGESLLALSKALQCSP 61

Query: 70  C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                  L     +     E +     + +          +         W         
Sbjct: 62  DYLLKGDLSQTNVAYHSRHEPRGSYPLISWVSAGQWMEAVEPYHKRAIENW--------- 112

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179
             H+              Q  SM         +G I++++  ++   G  ++       +
Sbjct: 113 --HDTTVDCSEDSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 170

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 171 ATFKKLVMDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208


>gi|117925374|ref|YP_865991.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp.
           MC-1]
 gi|171460783|sp|A0L9E2|LEXA_MAGSM RecName: Full=LexA repressor
 gi|117609130|gb|ABK44585.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp.
           MC-1]
          Length = 231

 Score = 96.0 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 28/224 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIEGRNRWPSTES 57
           MT  S ++I + I    +R  L P+   +A   G+  P++  + ++   +G  R      
Sbjct: 19  MTP-SQERIMQVIRNAIDRDGLPPTVKEIAEALGMKTPSAHEQVQKLVKKGFIR------ 71

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             +                           + +P+       +G    +     G     
Sbjct: 72  --RTPRKARSIEIVEQSPEEEPVEKKPDVARLVPVPIIGEVAAGIPILAVENHIGEL--- 126

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
                           +      K +  SM+     +GD +++        GD ++    
Sbjct: 127 ---------LMDSRTARGPCFALKVKGDSMIDAEIFEGDYVVVRHQALAENGDIVVAILD 177

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
            G+   K L      +I+L   N  Y    V    DI  + ++L
Sbjct: 178 -GEATVKRLY-ISEETIELRPENRSYQPIVVPPGGDIRILGKVL 219


>gi|26990601|ref|NP_746026.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985584|gb|AAN69490.1|AE016583_14 transcriptional regulator, Cro/CI family [Pseudomonas putida
           KT2440]
          Length = 215

 Score = 96.0 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 18/215 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA---A 64
           ++ + I       NLT   LA + G+D TS +  +R   +G +      S+  + A   A
Sbjct: 2   ELKDRIKAARAHANLTQGQLATQVGMDQTSISNLERGKSQGTSYIAQIASVCGVSALWLA 61

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                          G       + I ++     G+ G++       G            
Sbjct: 62  EGTGSMLHSVSNVMPGPPIISPTRRIEIVGTAQLGNDGYWVGLDVAEGWVETW------- 114

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                  +        + +  SM P  R G I +     ++  G+ +++    G  + K 
Sbjct: 115 -------SRDEDAYALRLKGDSMAPAIRSGWIAVCEPNHRLVPGEYVMVTTVDGQSMVKE 167

Query: 185 LISRRGRSIDLMSLNCCY-PVDTVEMSDIEWIARI 218
           L+      ++L S+N  Y     +  +DIE I  +
Sbjct: 168 LLFENEEGVNLASVNAAYGERRVIAWADIEKIHYV 202


>gi|170723210|ref|YP_001750898.1| putative phage repressor [Pseudomonas putida W619]
 gi|169761213|gb|ACA74529.1| putative phage repressor [Pseudomonas putida W619]
          Length = 248

 Score = 96.0 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 71/249 (28%), Gaps = 34/249 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   + +   +  +  RH L+P+ L R+ G+  ++ ++        +   PS   + K
Sbjct: 1   MQAMQKRNVATVLRELLARHGLSPTELHRRTGVPQSTLSRILSE----KIADPSDRHVSK 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL------------LYFPPSGSGGFFDSGV 108
           I      +  QL                                       S  F     
Sbjct: 57  IADYFGVSTEQLRGRAELGASREAALPAHGHADLSDISLWDDETPVEDDEVSVPFLREVE 116

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSA 162
              G+    +   E      G  +++              +  SMLP+ R G  + +N+ 
Sbjct: 117 LAAGSGRFVIEESERARLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNTG 176

Query: 163 I----QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT------VEMSDI 212
                 +  GD L      G +  K +       I L S N     D       ++   I
Sbjct: 177 KCSIGDIIDGD-LYAINHNGQLRVKQVYRLPTG-IRLRSFNRDEHPDEDYSFQLLQEEQI 234

Query: 213 EWIARILWA 221
             +  + W 
Sbjct: 235 SLLGHVFWW 243


>gi|85373679|ref|YP_457741.1| prophage MuMc02-like, S24 family peptidase [Erythrobacter litoralis
           HTCC2594]
 gi|84786762|gb|ABC62944.1| prophage MuMc02-like, peptidase, family S24 [Erythrobacter
           litoralis HTCC2594]
          Length = 211

 Score = 96.0 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 15/217 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + E +DR+  +     + ++R  G +P    +  +    G  R    E    +     
Sbjct: 2   EHVREELDRLILKSGYGYASISRLLGRNPAYVQQFIKR---GSPRKLDDEDRKTLACFFG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                                 +  +               V  +       G  E    
Sbjct: 59  VD--------EQVLGGPANPVTDGMVEIPVLDVEASAGFGAVAASETAHTRFGFDERWLR 110

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185
           H    A     +    +  SM P    GD ++++++       D + +      +V K +
Sbjct: 111 HLTS-AKSASLSIVGVKGDSMEPTLSDGDEVLVDASDHGSRLRDGIYVLRSDDALVVKRI 169

Query: 186 ISRRGRS-IDLMSLNCCYPV-DTVEMSDIEWIARILW 220
             + G   I + S N  YP    ++ S++  + R++W
Sbjct: 170 AIKPGGRQITIASDNPAYPTWYDMDRSEVHVVGRVIW 206


>gi|315925034|ref|ZP_07921251.1| LexA repressor 1 [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621933|gb|EFV01897.1| LexA repressor 1 [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 219

 Score = 96.0 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 9/216 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +++ I +  +   ++ S LA   G  + +S  K +   I+          I +I  A  
Sbjct: 3   DLYKNIKKRRQELKISQSKLAELVGYTNRSSIAKIEAGKID-----LPQSKIVEIAEALR 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRS 125
            T  +L+          +    +  +              G  P G     V  +     
Sbjct: 58  TTPKELMGWEDEKAEIKKINWSDNVVPMAINRDVVSIPVLGSVPAGVPVEAVEDIIGTIE 117

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                 A   +    +   TSM P+Y +GD +++      + G   +I     D   K +
Sbjct: 118 IPREWLAGGAEFIGLRVTGTSMYPMYLEGDTVVIEIKHDCDSGQDAIIYVNGYDATLKTV 177

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219
           +     +I L   N  +P  T    D  IE +  ++
Sbjct: 178 VKNDDGTITLKPRNPEWPTKTYGPGDDPIEILGPVV 213


>gi|254465213|ref|ZP_05078624.1| LexA repressor [Rhodobacterales bacterium Y4I]
 gi|206686121|gb|EDZ46603.1| LexA repressor [Rhodobacterales bacterium Y4I]
          Length = 233

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 62/229 (27%), Gaps = 12/229 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +R  + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRLQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I ++  +      +            +   +           +      G    G
Sbjct: 61  ARAIEILRLPDSLG-GTAEPQGFAPRVIDGGQASPRAAAAADPMRLAAIELPVMGRIAAG 119

Query: 113 NKWNTVGVPEIRSPHNGIYAIQ-TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
                +     +    G       Q    + +  SM       GDI+++  A   + GD 
Sbjct: 120 VPIEAISQVSHQVAVPGGMISPNGQHYALEVKGDSMIEAGINDGDIVVIREADTADNGDI 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    + G  I L + N  Y         ++   R++
Sbjct: 180 VVALVEGQEATLKYYQRQ-GGMIALEAANPVYETRRYREDQVQVQGRLV 227


>gi|254710220|ref|ZP_05172031.1| LexA repressor [Brucella pinnipedialis B2/94]
 gi|256031714|ref|ZP_05445328.1| LexA repressor [Brucella pinnipedialis M292/94/1]
 gi|261317778|ref|ZP_05956975.1| LexA repressor [Brucella pinnipedialis B2/94]
 gi|265988809|ref|ZP_06101366.1| LexA repressor [Brucella pinnipedialis M292/94/1]
 gi|261297001|gb|EEY00498.1| LexA repressor [Brucella pinnipedialis B2/94]
 gi|264661006|gb|EEZ31267.1| LexA repressor [Brucella pinnipedialis M292/94/1]
          Length = 240

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 57/235 (24%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTT------------EKKEKEIPLLYFPPSGSGG-FFD 105
            + L            L                     +  +  P      + +      
Sbjct: 61  ARALEVLRLPDSIAPGLSPQKKFAPSVIEGNLGKVASVQPVRPAPAPQNSEAPATVSVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
            G    G   + +                 +    + +  SM+      GD +I+     
Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N G+ ++      +   K        SI L + N  Y         +    +++
Sbjct: 181 ANPGEIVVALVDEEEATLKRFRREGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234


>gi|22296545|ref|NP_680505.1| CI like protein [Lactobacillus phage A2]
 gi|6599314|emb|CAB63660.1| CI like protein [Lactobacillus phage A2]
          Length = 224

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 21/228 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++ +I + ++ +  R  ++ S LAR+  +  +S ++          R      + K  
Sbjct: 1   MKTNDEIIKTLNDLRNREGISISELARRVDMAKSSVSRYFNGT-----REFPLNYVDKFA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           +A   T  + L           KK       Y P   S G   +    T +   T+ +P+
Sbjct: 56  SAL-HTTPESLIGVSPVDPFKVKKLNVHSYPYIPAEISAGILCNVDPLTSDDVETIQLPD 114

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGD 179
                 G YA  +          SM      G ++ +     +     GD ++       
Sbjct: 115 S---VMGRYAGDSSILMMHINGESMNQTIPDGSLIAVKQYNDIQDLKDGDIVVFADDGDY 171

Query: 180 IVAKVLISRRGRSID-LMSLNCC--YPVD-----TVEMSDIEWIARIL 219
              K   + R + I   +  +    +         +E  +I+ I R++
Sbjct: 172 A-VKYFYNDRQKQIVTFIPDSTDKRFSPIMYTYEDLEEENIKIIGRVV 218


>gi|17987123|ref|NP_539757.1| LexA repressor [Brucella melitensis bv. 1 str. 16M]
 gi|256044800|ref|ZP_05447704.1| LexA repressor [Brucella melitensis bv. 1 str. Rev.1]
 gi|260565599|ref|ZP_05836083.1| LexA repressor [Brucella melitensis bv. 1 str. 16M]
 gi|265991224|ref|ZP_06103781.1| LexA repressor [Brucella melitensis bv. 1 str. Rev.1]
 gi|25453096|sp|Q8YHG1|LEXA_BRUME RecName: Full=LexA repressor
 gi|17982786|gb|AAL52021.1| lexa repressor [Brucella melitensis bv. 1 str. 16M]
 gi|260151667|gb|EEW86761.1| LexA repressor [Brucella melitensis bv. 1 str. 16M]
 gi|263002008|gb|EEZ14583.1| LexA repressor [Brucella melitensis bv. 1 str. Rev.1]
          Length = 240

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 55/235 (23%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105
            + L            L           E  +  +                         
Sbjct: 61  ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
            G    G   + +                 +    + +  SM+      GD +I+     
Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTIIIKRGDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N G+ ++      +   K        SI L + N  Y         +    +++
Sbjct: 181 ANPGEIVVALVDEEEATLKRFRREGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234


>gi|304322192|ref|YP_003855835.1| LexA repressor [Parvularcula bermudensis HTCC2503]
 gi|303301094|gb|ADM10693.1| LexA repressor [Parvularcula bermudensis HTCC2503]
          Length = 229

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 58/222 (26%), Gaps = 8/222 (3%)

Query: 3   SFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
             + K+  +   I        ++PS    K  LD  S +   R       R        K
Sbjct: 1   MLTEKQRALLMFIHDRTTETGVSPSFEEMKEALDLKSKSGIHRLITALEERGFIRRLAHK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
             A     + + +        +     +      P    P S        G    G    
Sbjct: 61  ARALEVVRLPENVGAAPRPQPSAPFAPRVIDGSRPTPPPPASDLTEISVLGKIAAGTPIT 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            +   + R           +    +    SM       GD +I+        GD ++   
Sbjct: 121 AIQHEQARVQVPPSMLRSGEHFALEVAGDSMIEAGIFDGDTVIIQRCDDATNGDIVVALV 180

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
              +   K L  +RG SI L   N  Y         ++   R
Sbjct: 181 EDEEATLKYL-RKRGNSIALEPANAAYETRIFGADQVKVQGR 221


>gi|118468004|ref|YP_887073.1| LexA repressor [Mycobacterium smegmatis str. MC2 155]
 gi|171472978|sp|A0QVY5|LEXA_MYCS2 RecName: Full=LexA repressor
 gi|71360996|emb|CAJ19247.1| LexA protein [Mycobacterium smegmatis]
 gi|118169291|gb|ABK70187.1| LexA repressor [Mycobacterium smegmatis str. MC2 155]
          Length = 243

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            + I E I          PS   +    GL  TS   ++ +    +G  R          
Sbjct: 36  QRTILEVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVD 95

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           + A ++     +      G     +   +P+L    +G                +   +P
Sbjct: 96  VRAADDPAAAAVVTTDVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLP 149

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       +      K    SM+      GD +++      + GD +      G+ 
Sbjct: 150 RELVG-------EGSLFLLKVVGDSMVDAAICDGDWVVVRQQNVADNGDIVAAMID-GEA 201

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K     RG+ + LM  N  Y       ++   + +++
Sbjct: 202 TVKTFKRARGQ-VWLMPHNPAYDPI--PGNEAAVLGKVV 237


>gi|326623794|gb|EGE30139.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 231

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++    N+  + LA   G+D  + ++ +     G+ +  + +++ ++      
Sbjct: 2   NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLGV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117
            I +L     S G T  K                          GN              
Sbjct: 58  DIAELFT-SDSKGNTVCKHSDMRKDSDNVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +   + ++          +      +  SM P    GD++ ++ +I    GD + +    
Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
             I  K L       + ++S N  Y   ++            ++L  SQ
Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223


>gi|307700848|ref|ZP_07637873.1| repressor LexA [Mobiluncus mulieris FB024-16]
 gi|307613843|gb|EFN93087.1| repressor LexA [Mobiluncus mulieris FB024-16]
          Length = 251

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 67/249 (26%), Gaps = 34/249 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS------KRFGIEGRN 50
           M+  +   +++ + + R++   +  PS   LA   GL   S  +       ++  +    
Sbjct: 1   MSDLTKRQREVLDTLYRLSRELSYPPSVRELASAMGLSSPSSVQHHLEVLVEKGYLRRVP 60

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             P      K+   T     ++        +   + ++         +           P
Sbjct: 61  NQPRALEFVKLPEGTPAATTEMAPHAPEAPKVYSETQRNNQNNSSLKTTENISATIHTIP 120

Query: 111 TGNK-------------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150
            G                          + E       ++    +    +    SM    
Sbjct: 121 IGVADTADSNAIPLVGRIAAGIPITAEELVEDTFMLPRLFTGAGELFMLEVNGESMRDAA 180

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              GD +++ +  +   GD +      G+   K     +   I L+  N  +        
Sbjct: 181 IMNGDWVVVRAQNEARNGDIV-AAMLEGEATVKEFSRDK-GHIWLLPHNPSFEPI--PGD 236

Query: 211 DIEWIARIL 219
               + +++
Sbjct: 237 GATILGKVV 245


>gi|269125827|ref|YP_003299197.1| SOS-response transcriptional repressor, LexA [Thermomonospora
           curvata DSM 43183]
 gi|268310785|gb|ACY97159.1| SOS-response transcriptional repressor, LexA [Thermomonospora
           curvata DSM 43183]
          Length = 229

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 25/224 (11%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGR-NRWPSTE 56
            + ++  + E I    +R    PS   +    GL  TS   ++ +    +G   R P+  
Sbjct: 17  LTQRQRMVLEVIRDSVQRRGYPPSMREIGEAVGLTSTSSVSHQLRTLQRKGYLRRDPNRP 76

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              ++       +        ++G     K   +PL+    +G             +  +
Sbjct: 77  RAVEVRMPEGAPVRAAGTAASAEGAEAAPKAAMVPLVGRIAAGGPI------LAEESVED 130

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
              +P            +      +    SM       GD +++        GD +    
Sbjct: 131 VFALPRQLVG-------EGTHFLLQVSGDSMIEAAIADGDWVVVRQQPVAENGDIVAAMI 183

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   K    +    I LM  N  Y        +   + R++
Sbjct: 184 D-GEATVKTFKRKE-GHIWLMPQNKAYDPI--PGDEATILGRVV 223


>gi|23505482|ref|NP_700411.1| regulatory protein [Salmonella phage ST64B]
 gi|168822352|ref|ZP_02834352.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|23379229|gb|AAL25916.1| Sb38 [Salmonella phage ST64B]
 gi|205341260|gb|EDZ28024.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|261247208|emb|CBG25032.1| phage encoded transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994039|gb|ACY88924.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158553|emb|CBW18064.1| predicted bacteriophage protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|320086315|emb|CBY96088.1| 26 kDa repressor protein Regulatory protein CI [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|323130316|gb|ADX17746.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988930|gb|AEF07913.1| hypothetical protein STMUK_2020 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 231

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 70/229 (30%), Gaps = 20/229 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++    N+  + LA   G+D  + ++ +     G+ +  + +++ ++      
Sbjct: 2   NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLGV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117
            I +L       G T  K                          GN              
Sbjct: 58  DIAELFT-SDPKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +   + ++          +      +  SM P    GD++ ++ +I    GD + +    
Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
             I  K L       + ++S N  Y   ++            ++L  SQ
Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223


>gi|299067105|emb|CBJ38301.1| putative phage repressor [Ralstonia solanacearum CMR15]
          Length = 265

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 60/247 (24%), Gaps = 42/247 (17%)

Query: 14  DRMAERHNL-TPSGLARKAGLDPTSFNKSK-RFGIEG----------------RNRWPST 55
           +   E   L T + +AR            + R   +G                       
Sbjct: 10  EAARELKGLETQAEVARALNFSQQRVKNWEARGMSKGGMLRAQEIFGCSATWLETGRLPM 69

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------G 102
           E++ +   +             S         + +  +   P  +               
Sbjct: 70  ETVKQKSDSHQMEATLKEQSEASTYNPEPAHTRTLGGVSVRPIVTYESLEELPKESTVLI 129

Query: 103 FFDSGVFPTGNKWNT------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
                    GN   T        +P        + +        K    SM P     D 
Sbjct: 130 RRIDVELSAGNGRETWHIEEKEPLPFQADYIRRLDSKPKDLVAAKVNGDSMEPRLFDNDT 189

Query: 157 LILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE- 213
           ++++ A         +      G+++ K L       + ++S N   Y   TV    +E 
Sbjct: 190 VVVDKADTRVPANGGVFALVYAGELLVKRLFRLPDGGLKVVSDNQARYEPVTVGPDQVEH 249

Query: 214 --WIARI 218
              I R+
Sbjct: 250 VSIIGRV 256


>gi|199598926|ref|ZP_03212335.1| hypothetical phage-like protein [Lactobacillus rhamnosus HN001]
 gi|199590126|gb|EDY98223.1| hypothetical phage-like protein [Lactobacillus rhamnosus HN001]
          Length = 224

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 21/228 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++ +I + ++ +  R  ++ S LAR+  +  +S ++          R      + K  
Sbjct: 1   MKTNDEIIKTLNDLRNREGISISELARRVDMAKSSVSRYFNGT-----REFPLNYVDKFA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           +A   T  + L           KK       Y P   S G   +    T +   T+ +P+
Sbjct: 56  SAL-HTTPESLIGVSPVDPFKVKKLNVHSYPYIPADISAGILCNVDPLTSDDVETIQLPD 114

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGD 179
                 G YA  +          SM      G ++ +     +     GD ++       
Sbjct: 115 S---VMGRYAGDSSILMMHVNGESMNQTIPDGSLIAVKQYNDIQDLKDGDIVVFADDGDY 171

Query: 180 IVAKVLISRRGRSID-LMSLNCC--YPVD-----TVEMSDIEWIARIL 219
              K   + R + I   +  +    +         +E  +I  I +++
Sbjct: 172 A-VKYFYNDRQKQIVTFIPDSTDKRFSPIMYTYEDLEEENINIIGKVV 218


>gi|296331000|ref|ZP_06873475.1| LexA repressor [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674518|ref|YP_003866190.1| transcriptional repressor of the SOS regulon [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296152005|gb|EFG92879.1| LexA repressor [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412762|gb|ADM37881.1| transcriptional repressor of the SOS regulon [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 205

 Score = 95.6 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 37/227 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S ++  I   I    +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                      + +     +   P        S +    N
Sbjct: 61  TKPRAIEILDE--------------------EVDIPQSQVVNVPVIGKVTAGSPITAVEN 100

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +P+   P              +    SM+       D +I+      N G+ ++
Sbjct: 101 IEEYFPLPDRMVPP------DEHVFMLEIMGDSMIDAGILDKDYVIVKQQNIANNGEIVV 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         I L   N       ++   +  + +++
Sbjct: 155 AMTEDDEATVKRFYK-EDTHIRLQPENPTMEPIILQN--VSILGKVI 198


>gi|329919686|ref|ZP_08276664.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN
           1401G]
 gi|328937338|gb|EGG33762.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN
           1401G]
          Length = 231

 Score = 95.6 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 58/227 (25%), Gaps = 28/227 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL---------A 63
           ID    ++NLT   L +K G   +S ++          R+P  E I +I           
Sbjct: 12  IDYFRRQNNLTMEELGQKLGKAKSSISRWVSGE-----RYPKIEEIEQIAIFFNTDIYTL 66

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG----------FFDSGVFPTGN 113
                  +                ++  +  +                  +  G    G 
Sbjct: 67  IFGFNYNENSKSNILTVYNQLTDIRKHKVYSYAQQQLDEQNSNLNEKSSIYVVGTSAAGE 126

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                         +        D     +  SM P      I+  +    +  G+  + 
Sbjct: 127 PIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIGIF 183

Query: 174 KPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +     +  K        + I L S+N  Y         +  + +++
Sbjct: 184 EINGSAVTCKKYYVDYNSKKIILKSINPKYEPMYFAKDQVRILGKVV 230


>gi|212709591|ref|ZP_03317719.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM
           30120]
 gi|212687767|gb|EEB47295.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM
           30120]
          Length = 214

 Score = 95.6 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 29/230 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIF 59
           M    ++ I E +  + E   L+ + LA+  G    S     +        R  S +   
Sbjct: 1   MKKI-NEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGE-----RKISADDAL 54

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            I  A   +  +L+            +               G F               
Sbjct: 55  VISEALGVSPAELM------FGDRSDQVVSNYEYPLFSKVQAGAFTENSNA-------YT 101

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLI 173
             +  +               + +  SM       P + +G +++++   +V+ GD  + 
Sbjct: 102 RSDAIAWIPTAKKASDSAFWLEVEGHSMTAPQGGRPSFPEGMLILVDPEQEVSFGDFCIA 161

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +    +   K LI   G +  L  LN  + +  +  +  + I +++  SQ
Sbjct: 162 RLMNDEFTFKRLIR-EGETEYLEPLNPRFEMIPINGN-CQIIGKVV-KSQ 208


>gi|261821438|ref|YP_003259544.1| phage repressor [Pectobacterium wasabiae WPP163]
 gi|261605451|gb|ACX87937.1| putative phage repressor [Pectobacterium wasabiae WPP163]
          Length = 244

 Score = 95.6 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 64/244 (26%), Gaps = 37/244 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +  +     L+   L    G+   +  K +            T  I ++  A +  
Sbjct: 5   LAERLKTVRTSQGLSQKALGDMVGVSQAAIQKIEGGKAS------QTTKIVELSNALHIR 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L +           +  +   +                        V   +      
Sbjct: 59  PEWLANGEGPMRSDRVVRSLQESSIPPTSEWGTVSAWDSTTELSKDEVEVPFLKDIEFAC 118

Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163
           G   IQ++D                                 SM P+   G  + +++  
Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178

Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +     +L    + G         K L  + G  + + S N     +  + S++E I R+
Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLVIHSFNRD-TDEETDESEVEIIGRV 237

Query: 219 LWAS 222
            W S
Sbjct: 238 FWYS 241


>gi|153009375|ref|YP_001370590.1| LexA repressor [Ochrobactrum anthropi ATCC 49188]
 gi|166224638|sp|A6X0K7|LEXA_OCHA4 RecName: Full=LexA repressor
 gi|151561263|gb|ABS14761.1| SOS-response transcriptional repressor, LexA [Ochrobactrum anthropi
           ATCC 49188]
          Length = 239

 Score = 95.6 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 56/234 (23%), Gaps = 16/234 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +   + PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTT------------EKKEKEIPLLYFPPSGSGGFFDS 106
            + L            L                                  SG+      
Sbjct: 61  ARALEVLRLPDSIAPGLNAQKKFAPSVIEGSLGKTPPPPARPAPVATNDDTSGTVSVPVM 120

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
           G    G   + +                 +    + +  SM+      GD +I+      
Sbjct: 121 GRIAAGVPISAIQNQTHSLSLPPEMIGAGEHYALEVRGDSMIDAGIFDGDTVIIKRGDSA 180

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           N G+ ++      +   K    +   SI L + N  Y         +    +++
Sbjct: 181 NPGEIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVRVQGKLV 233


>gi|322714235|gb|EFZ05806.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 231

 Score = 95.6 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++    N+  + LA   G+D  + ++ +     G+ +  + +++ ++      
Sbjct: 2   NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLGV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117
            I +L     S G T  K                          GN              
Sbjct: 58  DIAELFT-SDSKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +   + ++          +      +  SM P    GD++ ++ +I    GD + +    
Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
             I  K L       + ++S N  Y   ++            ++L  SQ
Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223


>gi|9635515|ref|NP_059606.1| C2 [Enterobacteria phage P22]
 gi|62362268|ref|YP_224193.1| gp55 [Enterobacteria phage ES18]
 gi|168240083|ref|ZP_02665015.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451869|ref|YP_002044323.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|59800201|sp|P69202|RPC2_BPP22 RecName: Full=Repressor protein C2
 gi|15655|emb|CAA24470.1| unnamed protein product [Enterobacteria phage P22]
 gi|1143409|emb|CAA60873.1| c2 [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|8439602|gb|AAF75024.1| repressor protein [Enterobacteria phage P22]
 gi|28394307|tpg|DAA01021.1| TPA_inf: prophage repressor [Enterobacteria phage P22]
 gi|58339111|gb|AAW70526.1| gp55 [Enterobacteria phage ES18]
 gi|169658888|dbj|BAG12645.1| prophage repressor [Enterobacteria phage P22]
 gi|194410173|gb|ACF70392.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205340367|gb|EDZ27131.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 216

 Score = 95.6 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 67/220 (30%), Gaps = 28/220 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    ++  +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 7   GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALSKALQCSP 61

Query: 70  C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                  L     +     E +     + +          +         W         
Sbjct: 62  DYLLKGDLSQTNVAYHSRHEPRGSYPLISWVSAGQWMEAVEPYHKRAIENW--------- 112

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179
             H+              Q  SM         +G I++++  ++   G  ++       +
Sbjct: 113 --HDTTVDCSEDSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 170

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 171 ATFKKLVMDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208


>gi|209552478|ref|YP_002284393.1| putative repressor cI [Pseudomonas phage PAJU2]
 gi|209528751|dbj|BAG75043.1| putative repressor cI [Pseudomonas phage PAJU2]
          Length = 234

 Score = 95.6 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 88/230 (38%), Gaps = 22/230 (9%)

Query: 1   MTSFSHKKIWEAIDRMAE-RHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M + S K +   +  +   R +L     L++++G+  ++ ++  R   +      + ++I
Sbjct: 13  MMADSRKILANNLKYLMNCRDDLDNQGKLSKRSGVAQSTISRIVRGDSDTGV--DTLDAI 70

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKE-----IPLLYFPPSGSGGFFDSGVFPTGN 113
            ++    +  +     +    G+ T  K        +PL+ +  +G          P G+
Sbjct: 71  ARVFKVDSSDLVDAGLIDKLQGQNTNIKGTSGLTDPVPLISWVQAGMFTEAIDNFAP-GD 129

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
               +  P   S               +    SMLP YR G+I++++  +    G  +++
Sbjct: 130 AEELLPCPFPHSER---------SFALRVHGESMLPDYRDGEIILVDPDLAYKHGSDVVV 180

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARILWAS 222
           +   G    K +   +  +  LM+LN  +P   +E   D      ++ AS
Sbjct: 181 RTPDGSTTFKRIQITQDGTY-LMALNPSFPSRYIEIPEDTRICG-VVIAS 228


>gi|83593233|ref|YP_426985.1| LexA repressor [Rhodospirillum rubrum ATCC 11170]
 gi|123725964|sp|Q2RT47|LEXA_RHORT RecName: Full=LexA repressor
 gi|83576147|gb|ABC22698.1| SOS-response transcriptional repressor, LexA [Rhodospirillum rubrum
           ATCC 11170]
          Length = 251

 Score = 95.6 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 62/246 (25%), Gaps = 30/246 (12%)

Query: 3   SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKS-----KRFGIEGRNRW 52
             + K+  +   ID+  +   ++PS   +    GL   S  ++      +R  ++     
Sbjct: 1   MLTRKQYLLLSFIDQRLKLSGVSPSFDEMKDALGLKSKSGIHRLIKGLEERGFLKRLPHR 60

Query: 53  PSTESIFKI------------------LAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                + ++                         + +    P               +  
Sbjct: 61  ARALEVLRLPCNLTFDGDGEALDDGQPAPLFGGPLPETGFSPQVIRGNFTPTLPSTQVPQ 120

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153
              + S      G    G     +  P              +    + +  SM       
Sbjct: 121 VLFTESISLPLLGKIAAGTPIAALIDPTSSIDVPASMVRGGEHFALRIEGDSMIEAGILS 180

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           GD+ ++    +   G  ++      +   K L  +   SI L   N  +         + 
Sbjct: 181 GDLAVVRRCDEAENGTVIVALVDNEEATLKRLRRKGA-SIALEPANRAFKTQIYGPDRVR 239

Query: 214 WIARIL 219
              R++
Sbjct: 240 IQGRLV 245


>gi|223986049|ref|ZP_03636078.1| hypothetical protein HOLDEFILI_03384 [Holdemania filiformis DSM
           12042]
 gi|223961999|gb|EEF66482.1| hypothetical protein HOLDEFILI_03384 [Holdemania filiformis DSM
           12042]
          Length = 204

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 71/218 (32%), Gaps = 33/218 (15%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  + +++++T + LA K G    T+  K +          P    + ++    N TI
Sbjct: 5   ENLRYLRKKYHITQNDLAEKFGYKSFTTIQKWEDGTS-----MPKMSILQQLADFFNLTI 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPH 127
            +L++                           G     +      ++ +   + E     
Sbjct: 60  ERLINQD------------------LTRDEMSGVRVPVLGSVKAGYDHLAEQIVEDYEWV 101

Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
           +   A   +         SM      +GD + ++    V+ G   ++     ++  K + 
Sbjct: 102 SPDEARGGEYFYLDVVGDSMKNARIEEGDRVYIHRQNSVDNGQIAVVLLENDEVTLKRVF 161

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219
            + G  I L   N  Y    V + D     ++ + R++
Sbjct: 162 YKDGDMI-LQPENDAYEPIVVPLKDVMDRRVQILGRLV 198


>gi|71648700|sp|Q5FNN8|LEXA_GLUOX RecName: Full=LexA repressor
          Length = 238

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 58/241 (24%), Gaps = 31/241 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSK---------- 42
           M +    ++   ID    R   +PS         L  K+G+     +  +          
Sbjct: 1   MLTRKQHQLLLYIDDHLRRTGYSPSFDEMKDALELRSKSGIHR-LISALEERGFLRRHHH 59

Query: 43  RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT---EKKEKEIPLLYFPPSG 99
           R       R P   +       T       +      G      E            P  
Sbjct: 60  RARALEVLRLPHMGTEAPAATGTGTAFVPAVLNQGQTGLEGAFSEASVANDRQTVSIPLY 119

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILI 158
                   +    +  + + VP              +         SM       GDI I
Sbjct: 120 GRIAAGLPIEAMQDDSDRIDVPVSLLGT-------GEHYALTVAGDSMIEAGILDGDIAI 172

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +        G  ++      ++  K L  R G  I L + N  Y         +    R+
Sbjct: 173 IRRRETAENGQIIVALIDEQEVTLKKLRRR-GSMIALEAANRDYETRIFPAERVHIQGRL 231

Query: 219 L 219
           +
Sbjct: 232 V 232


>gi|118463995|ref|YP_882791.1| LexA repressor [Mycobacterium avium 104]
 gi|254776054|ref|ZP_05217570.1| LexA repressor [Mycobacterium avium subsp. avium ATCC 25291]
 gi|171472974|sp|A0QIQ3|LEXA_MYCA1 RecName: Full=LexA repressor
 gi|118165282|gb|ABK66179.1| LexA repressor [Mycobacterium avium 104]
          Length = 232

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 59/223 (26%), Gaps = 22/223 (9%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
            S + ++  I   I          PS   +    GL  TS    +   +E +        
Sbjct: 21  PSLTERQRTILNVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERK------GY 74

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + +          + +D   +   T       +P   F P          +       + 
Sbjct: 75  LRRDPNRPRAVDVRGVDDDVAAPATEVAGSDALPEPTFVPVLGRIAAGGPILAEEAVEDV 134

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
             +P                   K    SM       GD +++      + GD +     
Sbjct: 135 FPLPRELVG-------DGTLFLLKVVGDSMVEAAICDGDWVVVRQQHVADNGDIVAAMID 187

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K      G  + LM  N  +       +D   + +++
Sbjct: 188 -GEATVKTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 226


>gi|85708240|ref|ZP_01039306.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. NAP1]
 gi|85689774|gb|EAQ29777.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. NAP1]
          Length = 211

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 15/217 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + E +DR+  +     + ++R  G +P    +  +    G  R    E    +     
Sbjct: 2   EHVREELDRLILKGGYGYASISRLLGRNPAYVQQFIKR---GSPRKLDDEDRKTLACFFG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                                 +  +               V  +       G  E    
Sbjct: 59  VD--------EQVLGGPANPVTDGMVEIPVLDVEASAGFGAVAASETAHTRFGFDERWLR 110

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185
           H    A     +    +  SM P    GD ++++++       D + +      +V K +
Sbjct: 111 HLTS-AKSASLSIVGVKGDSMEPTLSDGDEVLVDASDHGSRLRDGIYVLRSDDALVVKRI 169

Query: 186 ISRRGRS-IDLMSLNCCYPV-DTVEMSDIEWIARILW 220
             + G   I + S N  YP    ++ S++  + R++W
Sbjct: 170 AIKPGGRQITIASDNPAYPTWYDMDRSEVHVVGRVIW 206


>gi|50121363|ref|YP_050530.1| regulator of pectin lyase production [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611889|emb|CAG75338.1| regulator of pectin lyase production [Pectobacterium atrosepticum
           SCRI1043]
          Length = 244

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 62/244 (25%), Gaps = 37/244 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +        L+   L    G+   +  K +            T  I ++  A +  
Sbjct: 5   LAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS------QTTKIVELSNALHIR 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L +           +  +   +                        V   +      
Sbjct: 59  PEWLANGGGPMHSDRVVRSLQESSIPPTSKWGTVSAWDNTTKLSEDEVEVPFLKDIEFAC 118

Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163
           G   IQ++D                                 SM P+   G  + +++  
Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178

Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +     +L    + G         K L  + G  + + S N     +    S++E I R+
Sbjct: 179 KRIIDGKLYAIAQEGSGNDKLKRIKQLYRKPGGLLVIHSFNRD-ADEEAYESEVEIIGRV 237

Query: 219 LWAS 222
            W S
Sbjct: 238 FWYS 241


>gi|158520251|ref|YP_001528121.1| LexA family transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158509077|gb|ABW66044.1| transcriptional repressor, LexA family [Desulfococcus oleovorans
           Hxd3]
          Length = 210

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 54/217 (24%), Gaps = 28/217 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +++ E           +PS    A    +  T+ ++                   K+L 
Sbjct: 9   QQQVLEYFQHEIAETGASPSLRQAADALSVSHTAISQ-----------------ALKLLE 51

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                 +   +      P          ++       T+ +   
Sbjct: 52  KKGYITRHGRYSRDIHVLNPMNQSAGMHRWREIPVIGAITAGLPMYAQQEWEGTLVLDRS 111

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P +            + +  SM       GD++I         G+ ++      +   
Sbjct: 112 CFPGD-------NLFALRVKGDSMKDAAILDGDLVICEPRQFAENGEIVVALVNGEEATV 164

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K    R+   I+L   N  Y    +   D+    +++
Sbjct: 165 KRFFKRQD-HIELKPENPAYAPLKLMFGDVLIQGKVI 200


>gi|269215577|ref|ZP_06159431.1| repressor LexA [Slackia exigua ATCC 700122]
 gi|269131064|gb|EEZ62139.1| repressor LexA [Slackia exigua ATCC 700122]
          Length = 232

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 17/222 (7%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFN-KSKRFGIEGRNRWPSTES--I 58
             +++++ I    + H + P+   +AR   L  P++ +        +G       +S  +
Sbjct: 15  KQQEVYDFIVSSMKEHGIAPTIRDIARGLKLSSPSTVHVHLANLETKGYIHRDPLKSRCM 74

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +         Q   +  +D             +   P          +    N   T+
Sbjct: 75  TVLHEEDLMQPGQPASIHETDSGFGSVGTGGFSNIVTLPVVGNVAAGQPILAEQNITETI 134

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P                   + +  SM+ +    GD +++        GD ++     
Sbjct: 135 PLPTEIVG-------DGSSFLLQVRGESMIEIGINDGDFVVVQEQPTARNGDVVVAIID- 186

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                K     R   I L   N       V   D+    +++
Sbjct: 187 DGATVKTYYRERD-HIRLQPENSAMEPIIV-RDDVSIAGKVV 226


>gi|31793892|ref|NP_856385.1| LexA repressor [Mycobacterium bovis AF2122/97]
 gi|121638595|ref|YP_978819.1| LexA repressor [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224991087|ref|YP_002645776.1| repressor [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31619486|emb|CAD94924.1| REPRESSOR LEXA [Mycobacterium bovis AF2122/97]
 gi|121494243|emb|CAL72721.1| Repressor lexA [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224774202|dbj|BAH27008.1| repressor [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 217

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 20/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I + I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 12  QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 71

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   L  +    G     +    P+L    +G                +   +P  
Sbjct: 72  VRGADDAALPPVTEVAGSDALPEPTFAPVLGRIAAGGPI------LAEEAVEDVFPLPRE 125

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +      K    SM       GD +++      + GD +      G+   
Sbjct: 126 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 177

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G  + LM  N  +       +D   + +++
Sbjct: 178 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 211


>gi|157166008|ref|YP_001449260.1| putative repressor protein CI [Phage BP-4795]
 gi|260854732|ref|YP_003228623.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
 gi|7239814|gb|AAD04644.2| cI protein [Enterobacteria phage H-19B]
 gi|49523607|emb|CAD88825.1| putative repressor protein CI [Enterobacteria phage BP-4795]
 gi|257753381|dbj|BAI24883.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
 gi|282935423|gb|ADB03775.1| putative repressor CI [Enterobacteria phage ST2-8624]
 gi|323157451|gb|EFZ43562.1| peptidase S24-like family protein [Escherichia coli EPECa14]
          Length = 234

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 8/200 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +D   +    T +  A K G+ P   ++  +   E   R    +   K  AA       L
Sbjct: 15  LDEHKKIAGNTNASFADKLGVSP---SQLTQVSGEKSTRNIGDKLARKFEAALGLPNGWL 71

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
             +       +         L F      G               + + E R     IY+
Sbjct: 72  DLVHDVTPIASCSDS-----LTFVGQVRKGLVRVVGEAILGVDGAIEMTEERDGWLKIYS 126

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                   + +  SM P  + G+ +++    +V  GD + ++   G  + KVL   R   
Sbjct: 127 DDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNMIKVLGYDRDGE 186

Query: 193 IDLMSLNCCYPVDTVEMSDI 212
               S+N  +   T+    +
Sbjct: 187 YQFTSINQDHRPITLPYHQV 206


>gi|420538|pir||S32822 repressor protein cI - phage 434
 gi|455364|gb|AAA72530.1| cI repressor [unidentified cloning vector]
 gi|224174|prf||1011238A cI gene
          Length = 210

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 24/218 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +     +  L  + LA+K G    S  + +    + R R+     + ++ +A   +
Sbjct: 3   ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRF-----LPELASALGVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSP 126
           +  LL+             +             G +     P    +             
Sbjct: 57  VDWLLNGTSDSNVRFVGHVEPKGKYPLISMVRAGSWCEACEPYDIKDIDEWYDSDVNLL- 115

Query: 127 HNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181
                         K +  SM         +G ++++++  +   G  ++       +  
Sbjct: 116 --------GNGFWLKVEGDSMTSPVGQSIPEGHMVLVDTGREPVNGSLVVAKLTDANEAT 167

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K L+   G+   L  LN  +P+  +  +  + I  ++
Sbjct: 168 FKKLVIDGGQKY-LKGLNPSWPMTPINGN-CKIIGVVV 203


>gi|190149742|ref|YP_001968267.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307263053|ref|ZP_07544675.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189914873|gb|ACE61125.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306871679|gb|EFN03401.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 225

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 12/208 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +       NL    +A        S             R P+ + + K+L        
Sbjct: 7   EFVREKMVEKNLKQDDIAEALDRTQGSIGHWLTG-----RRTPNFDDVAKMLNVVGVDQV 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L           ++       L        G        T  +  TV + E+R+ +  +
Sbjct: 62  ILNSDGLITTLDNDE-------LEIIGKPKDGIIPVVGEATMGRDETVRLEELRTGYINL 114

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           Y+        + + +SM P  + G+ +++        GD +LI    G  + K L   R 
Sbjct: 115 YSADPDAYAVRGKGSSMEPRIKSGEYIVIEPNTPPMNGDDVLICTIAGQYMIKTLDWHRD 174

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                 S+N  +    +  +++  I  +
Sbjct: 175 GEYRFSSINNAHQPFNLPENEVVNIHTV 202


>gi|111225062|ref|YP_715856.1| LexA repressor [Frankia alni ACN14a]
 gi|123142679|sp|Q0RDY1|LEXA_FRAAA RecName: Full=LexA repressor
 gi|111152594|emb|CAJ64335.1| Global regulator (repressor) for SOS regulon (LexA repressor)
           [Frankia alni ACN14a]
          Length = 253

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 60/220 (27%), Gaps = 12/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
            +K+ E I    ER    PS   +    GL  TS   ++ K    +G   R P+     +
Sbjct: 34  QRKVLEVIRAEVERRGYPPSVREIGEAVGLTSTSSVAHQLKVLEEKGYLRRDPNRPRAME 93

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L+                            +     +        G    G        
Sbjct: 94  VLSPDRPRRKADSGAAAVVSTFPGAAAAPAGVGGEGSAAYVPVL--GRIAAGGPILAEQA 151

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E   P       +      +    SM+      GD +++      + G+ +      G+
Sbjct: 152 IEDVFPLPKEIVGEGTLFLLRVVGESMINAAICDGDWVVVRQQPVADNGEIVAAMID-GE 210

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K L   R   I L   N  +        +   + RI+
Sbjct: 211 ATVKRL-RVRDGKIWLHPENPTFSDI--PGEEATILGRIV 247


>gi|323190855|gb|EFZ76122.1| peptidase S24-like family protein [Escherichia coli RN587/1]
          Length = 234

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 8/200 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +D   +    T +  A K G+ P   ++  +   E   R    +   K  AA       L
Sbjct: 15  LDEHKKIAGNTNASFADKLGVSP---SQLTQVSGEKSTRNIGDKLARKFEAALGLPNGWL 71

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
             +       +         L F      G               + + E R     IY+
Sbjct: 72  DLVHDVTPIASCSDS-----LTFVGQVRKGLVRVVGEAILGVDGAIEMTEERDGWLNIYS 126

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                   + +  SM P  + G+ +++    +V  GD + ++   G  + KVL   R   
Sbjct: 127 DDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNMIKVLGYDRDGE 186

Query: 193 IDLMSLNCCYPVDTVEMSDI 212
               S+N  +   T+    +
Sbjct: 187 YQFTSINQDHRPITLPYHQV 206


>gi|299538331|ref|ZP_07051614.1| LexA repressor [Lysinibacillus fusiformis ZC1]
 gi|298725918|gb|EFI66510.1| LexA repressor [Lysinibacillus fusiformis ZC1]
          Length = 205

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 59/227 (25%), Gaps = 37/227 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           M   S   + I   I          PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MKKVSKRQEDILAFIKEEVRAKGYPPSVREIGEAVGLASSSTVHGHLARLEQKGFIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                      ++  +   +   P        S +    N
Sbjct: 61  TKPRAIEILEP--------------------EESIQKQQVIHVPLVGKVTAGSPITAIEN 100

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +P+             Q    +    SM       GD++I+      N GD ++
Sbjct: 101 IEEYFPLPDTYGTSED------QLFMLEIMGESMIEAGILDGDLVIVKQKATANNGDIVV 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       V    +  + +++
Sbjct: 155 AMTAEDEATVKRFFKEKN-HFRLQPENSSMEPIIV--DQVSILGQVV 198


>gi|104774235|ref|YP_619215.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116514323|ref|YP_813229.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122274945|sp|Q049T1|LEXA_LACDB RecName: Full=LexA repressor
 gi|123378419|sp|Q1G9M5|LEXA_LACDA RecName: Full=LexA repressor
 gi|103423316|emb|CAI98157.1| LexA (transcriptional repressor of the SOS regulon) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116093638|gb|ABJ58791.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126020|gb|ADY85350.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 206

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 33/224 (14%)

Query: 3   SFSHK----KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
             +H     +I + I    E     P+   +    GL  TS        +E +       
Sbjct: 1   MATHDSKQLEILQYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLTRLERKGYLIKDA 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +  + L  T+  +                           P          +    +  +
Sbjct: 61  TKPRALEITHAGLD-----------------ALGIKPKDIPVIGVVTAGQPILAVQDVED 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +P   +      +   +    +   TSM+      GD +I+        G+ ++   
Sbjct: 104 YFPLPPNLA------SDAGELFMLRVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMT 157

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   K           L   N       +    ++ + +++
Sbjct: 158 DDGEATVKRFFK-EDLHYRLQPENDAMDPIILNH--VQILGKVV 198


>gi|291544659|emb|CBL17768.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Ruminococcus sp. 18P13]
          Length = 208

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 61/217 (28%), Gaps = 21/217 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I    +  + T   LA   G    +  K +   I         E+I K L  +  
Sbjct: 2   NIGERIKTARKEIDKTQQELADAIGTTKQNVYKYENGIITNIPSD-KIEAIAKFLHVSPA 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +    +    D        K                   +F   ++ + +         
Sbjct: 61  YLFGWEEESLYDQFDNIHPIKLKKFPLL----GDIACGEPIFADEDRESYIMADMDIRA- 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                    D   + +  SM+    + GDI+ +     V  G+   +    G+   K + 
Sbjct: 116 ---------DFCLRAKGDSMINARIQDGDIVFIRKMPMVENGEIAAVIID-GEATLKRVQ 165

Query: 187 SRR-GRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
                  + L   N  Y        E+++I  + + +
Sbjct: 166 YYPQKGKLILYPENPNYEPFFYSGEELNEIRILGKAV 202


>gi|240948468|ref|ZP_04752844.1| transcription regulator [Actinobacillus minor NM305]
 gi|240297209|gb|EER47771.1| transcription regulator [Actinobacillus minor NM305]
          Length = 239

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 23/228 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    E+  L+ + +A +  +  ++    +        R P    I KI       
Sbjct: 11  IGNRIREQREKLGLSRNEMADRLDVSLSALQNWE-----MNEREPQASMIIKIAEFLGVA 65

Query: 69  ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---- 118
              LL    S  +  +       +  E              F+S     G     V    
Sbjct: 66  PNYLLTGEQSQPQEAKGIVARAFEALEKERTEQDEVEMLSSFESIEVSAGFGSFNVGVTE 125

Query: 119 ---GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
               VP   +    +              +SMLP    GD L+++ + +    +++ +  
Sbjct: 126 PDGQVPYDSNLLRNLGVKPKHCGVFWANGSSMLPTIHNGDQLLVDFSKKEVKNNKVYLVQ 185

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD---IEWIARIL 219
               +  K +       ++L+S N   Y    +   +   ++ I +++
Sbjct: 186 NGDSVWVKRVKIEWDG-VELISDNKEEYRPIRISADEAQNLQIIGQVV 232


>gi|332970254|gb|EGK09246.1| LexA family repressor/S24 family protease [Kingella kingae ATCC
           23330]
          Length = 206

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 71/210 (33%), Gaps = 17/210 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        L+ + L + AG+  ++  + +        R  S+  I ++  A   T+ 
Sbjct: 5   ERVKNRRLELGLSQAALGKLAGVPQSTIGQIENG------RNKSSTKILELAHALQTTVE 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
            L+D      +             LY  P  S     S         + +     R+   
Sbjct: 59  YLVDGVEPAQKQPSLPNVSEMPTPLYSVPVISWVQAGSWQPVELFDDDDLEYIVCRTK-- 116

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
               +       + +  SM P + +GDI++++   +   G  ++      +   K L+  
Sbjct: 117 ----LGKDGYALRVRGDSMQPEFTEGDIIVIDPHGEPRAGSFVIALHD-NETTFKQLVFD 171

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            G    L  LN  YP   ++ +D   +  +
Sbjct: 172 -GSRPMLRPLNSNYPYLQIKEND-RILGVV 199


>gi|33339176|gb|AAQ14269.1|AF251128_1 LexA [Sinorhizobium meliloti]
          Length = 238

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 61/232 (26%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                + K+      A+         +                      + S      G 
Sbjct: 61  ARALEVIKLPEAYAGASQVRRGFSPSVIEGSLGKPAAPPPAPKPAPPAEAASVAVPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G   + +                 +    + +  SM       GD +I+ +    + 
Sbjct: 121 IAAGVPISAIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDTVIIRNGSTASP 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K    R   SI L + N  Y         ++   R++
Sbjct: 181 GDIVVALIDDEEATLKRFRRRGA-SIALEAANPAYETRIFGPDRVKIKGRLV 231


>gi|121534819|ref|ZP_01666639.1| putative prophage repressor [Thermosinus carboxydivorans Nor1]
 gi|121306614|gb|EAX47536.1| putative prophage repressor [Thermosinus carboxydivorans Nor1]
          Length = 215

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 15/216 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +  + E+  +T   +A   G+   ++   +        R P   ++ ++      +
Sbjct: 2   LGERLKSLREQKGITQQEMADILGIARGTYAHYEID-----RREPDNATLSRLADFFGVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  LL         T+     IP                  P G  +            +
Sbjct: 57  VDYLLGRDKPKPSITDLFPDAIPADLSNFVPIPIVGTVKAGPNGLAYEE---HLGYEYVD 113

Query: 129 GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD--RLLIKPRTGDIVAKVL 185
                  +    + +  SM+      GD+ ++    +V  GD   +++     +   K +
Sbjct: 114 KKDVNGAKHIFLQVKGDSMIGEGILPGDLALVKEQPEVYSGDLAVVIVDDIEPEGRIKRV 173

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218
             + G SI L S N  YP +     +   I  + ++
Sbjct: 174 HFK-GDSIVLQSANPSYPPEIFTGEERKKIRIVGKV 208


>gi|15609857|ref|NP_217236.1| LexA repressor [Mycobacterium tuberculosis H37Rv]
 gi|15842258|ref|NP_337295.1| LexA repressor [Mycobacterium tuberculosis CDC1551]
 gi|148662561|ref|YP_001284084.1| LexA repressor [Mycobacterium tuberculosis H37Ra]
 gi|148823909|ref|YP_001288663.1| LexA repressor [Mycobacterium tuberculosis F11]
 gi|289444262|ref|ZP_06434006.1| LexA repressor [Mycobacterium tuberculosis T46]
 gi|289448375|ref|ZP_06438119.1| repressor lexA [Mycobacterium tuberculosis CPHL_A]
 gi|289570896|ref|ZP_06451123.1| repressor lexA [Mycobacterium tuberculosis T17]
 gi|289575418|ref|ZP_06455645.1| repressor lexA [Mycobacterium tuberculosis K85]
 gi|289746522|ref|ZP_06505900.1| SOS response repressor protein lexA [Mycobacterium tuberculosis
           02_1987]
 gi|289754822|ref|ZP_06514200.1| SOS regulatory protein LexA [Mycobacterium tuberculosis EAS054]
 gi|289758849|ref|ZP_06518227.1| repressor lexa [Mycobacterium tuberculosis T85]
 gi|289762891|ref|ZP_06522269.1| repressor lexA [Mycobacterium tuberculosis GM 1503]
 gi|298526190|ref|ZP_07013599.1| SOS regulatory protein LexA [Mycobacterium tuberculosis 94_M4241A]
 gi|1016352|emb|CAA62750.1| lexA [Mycobacterium tuberculosis H37Rv]
 gi|2182011|emb|CAB09461.1| REPRESSOR LEXA [Mycobacterium tuberculosis H37Rv]
 gi|13882550|gb|AAK47109.1| SOS regulatory protein LexA [Mycobacterium tuberculosis CDC1551]
 gi|148506713|gb|ABQ74522.1| LexA repressor [Mycobacterium tuberculosis H37Ra]
 gi|148722436|gb|ABR07061.1| SOS response repressor protein lexA [Mycobacterium tuberculosis
           F11]
 gi|289417181|gb|EFD14421.1| LexA repressor [Mycobacterium tuberculosis T46]
 gi|289421333|gb|EFD18534.1| repressor lexA [Mycobacterium tuberculosis CPHL_A]
 gi|289539849|gb|EFD44427.1| repressor lexA [Mycobacterium tuberculosis K85]
 gi|289544650|gb|EFD48298.1| repressor lexA [Mycobacterium tuberculosis T17]
 gi|289687050|gb|EFD54538.1| SOS response repressor protein lexA [Mycobacterium tuberculosis
           02_1987]
 gi|289695409|gb|EFD62838.1| SOS regulatory protein LexA [Mycobacterium tuberculosis EAS054]
 gi|289710397|gb|EFD74413.1| repressor lexA [Mycobacterium tuberculosis GM 1503]
 gi|289714413|gb|EFD78425.1| repressor lexa [Mycobacterium tuberculosis T85]
 gi|298495984|gb|EFI31278.1| SOS regulatory protein LexA [Mycobacterium tuberculosis 94_M4241A]
 gi|326904335|gb|EGE51268.1| repressor lexA [Mycobacterium tuberculosis W-148]
 gi|328457971|gb|AEB03394.1| repressor lexA [Mycobacterium tuberculosis KZN 4207]
          Length = 217

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I + I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 12  QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 71

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   L  +    G     +   +P+L    +G                +   +P  
Sbjct: 72  VRGADDAALPPVTEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 125

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +      K    SM       GD +++      + GD +      G+   
Sbjct: 126 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 177

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G  + LM  N  +       +D   + +++
Sbjct: 178 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 211


>gi|317121920|ref|YP_004101923.1| SOS-response transcriptional repressor, LexA [Thermaerobacter
           marianensis DSM 12885]
 gi|315591900|gb|ADU51196.1| SOS-response transcriptional repressor, LexA [Thermaerobacter
           marianensis DSM 12885]
          Length = 201

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 45/229 (19%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51
           M   +   ++I + I          PS   +    GL  TS       + +R G     R
Sbjct: 1   MQELTRRQREILDFIKGWVRERGYPPSVREIGEAVGLKSTSTVHTYLAQLERKGYI--RR 58

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            P+     +IL   N     +           +                       +   
Sbjct: 59  DPTKPRAIEILDEANVRTRTVPVPLVGQVTAGQP----------------------ILAV 96

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
            N  + + +P    P       + +    + +  SM+      GD +I+        GD 
Sbjct: 97  ENIEDILPLPADLVP-------EGEVFALRIRGDSMIGAGILDGDYVIVRRQDTAQNGDI 149

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K     R   I L   N       V  + +  + +++
Sbjct: 150 VVAL-LEDEATVKRFYQERDG-IRLQPENPAMEPIRVRHARV--LGKVV 194


>gi|163758692|ref|ZP_02165779.1| peptidase, S24 (LexA) family protein [Hoeflea phototrophica DFL-43]
 gi|162283982|gb|EDQ34266.1| peptidase, S24 (LexA) family protein [Hoeflea phototrophica DFL-43]
          Length = 229

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 13/219 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  +  +   T    A+K G+   +     R       R PS E + ++       
Sbjct: 11  VGERIQSLVGKDQ-TLEQFAQKIGVSSRTLGNYLRGE-----REPSYEFLRRVRTICGAD 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I  L+    +  R    + +    +  P          G      +              
Sbjct: 65  INWLITGEGTAERALAVRGEAPNQVSIPRYAIQASAGDGAVVLSQEIEDF-FTVSPDWLA 123

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKVLI 186
                  +    + +  SM P    GDIL+L+   +  V     + +    G ++ K L 
Sbjct: 124 RYLPKGAKAGIIEARGDSMEPTIADGDILLLDFSISSSVVSDGGVFVISVDGALLVKRLQ 183

Query: 187 SRRGRSIDLMSLNCCYP----VDTVEMSDIEWIARILWA 221
                 I + S N  Y             I   A+++WA
Sbjct: 184 LTVDGHILIRSDNDLYEQEKVTREFADERITVHAKVVWA 222


>gi|227875237|ref|ZP_03993379.1| LexA repressor [Mobiluncus mulieris ATCC 35243]
 gi|227844142|gb|EEJ54309.1| LexA repressor [Mobiluncus mulieris ATCC 35243]
          Length = 251

 Score = 95.2 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 34/249 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS------KRFGIEGRN 50
           M+  +   +++ + + R++   +  PS   LA   GL   S  +       ++  +    
Sbjct: 1   MSDLTKRQREVLDTLYRLSRELSYPPSVRELASAMGLSSPSSVQHHLEVLVEKGYLRRVP 60

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             P      K+   T     ++        +   + ++         +           P
Sbjct: 61  NQPRALEFVKLPEGTPVVTTEMAPHAPEAPKVYSETQRNNQNNSSLKTTENISATIHTIP 120

Query: 111 TGNK-------------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150
            G                          + E        +    +    +    SM    
Sbjct: 121 IGVADTADSNAIPLVGRIAAGTPITAEELVEDTFMLPRRFTGAGELFMLEVNGESMRDAA 180

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              GD +++ +  +   GD +      G+   K     +   I L+  N  +        
Sbjct: 181 IMNGDWVVVRAQNEARNGDIV-AAMLEGEATVKEFSRDK-GHIWLLPHNPSFEPI--PGD 236

Query: 211 DIEWIARIL 219
               + +++
Sbjct: 237 GATILGKVV 245


>gi|21914458|gb|AAM81423.1|AF527608_45 C2 protein [Salmonella phage P22-pbi]
          Length = 216

 Score = 95.2 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 66/220 (30%), Gaps = 28/220 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    ++  +  + L +  G+   + ++ +R   E     P+ E +  +  A   + 
Sbjct: 7   GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGEDLLALSKALQCSP 61

Query: 70  C-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                  L     +     E +     + +          +         W         
Sbjct: 62  DYLLKGDLSQTNVAYHSRHEPRGSYPLISWVSAGQWMEAVEPYHKRAIENW--------- 112

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179
             H+              Q  SM         +G I++++  ++   G  ++       +
Sbjct: 113 --HDTTVDCSEDSFWLDVQGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENE 170

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 171 ATFKKLVMDAGRKF-LKPLNPQYPMIEINGN-CKIIGVVV 208


>gi|313124051|ref|YP_004034310.1| lexa repressor [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280614|gb|ADQ61333.1| LexA repressor [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325685931|gb|EGD27995.1| transcriptional repressor LexA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 206

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 33/224 (14%)

Query: 3   SFSHK----KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
             +H     +I + I    E     P+   +    GL  TS        +E +       
Sbjct: 1   MATHDSKQLEILQYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLTRLERKGYLIKDA 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +  + L  T+  +                           P          +    +  +
Sbjct: 61  TKPRALEITHAGLD-----------------ALGIKPKDIPVIGVVTAGQPILAVQDVED 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +P   +      +   +    +   TSM+      GD +I+        G+ ++   
Sbjct: 104 YFPLPPNLA------SDAGELFMLRVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMT 157

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   K           L   N       +    ++ + +++
Sbjct: 158 DDGEATVKRFFK-EDLHYRLQPENDAMDPIILNH--VQILGKVV 198


>gi|317495269|ref|ZP_07953639.1| LexA repressor [Gemella moribillum M424]
 gi|316914691|gb|EFV36167.1| LexA repressor [Gemella moribillum M424]
          Length = 212

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 57/208 (27%), Gaps = 13/208 (6%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            +  +  N+  + LAR   + P+S +   +         P  + +  I    +     L+
Sbjct: 10  KQCLKEKNIKQAELARSTKITPSSISDWSKGKYV-----PKRDKLLAIAEYLSVNPDWLM 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
               +                     +      G    G+    V + E    H  I   
Sbjct: 65  GDCDNMFVEEHITSSSDEDSDEYIDNTSKLPILGTICAGDG---VYIEEEYDEHIFIDQG 121

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191
              D   + +  SM       GD++ +     V  G    +      +   K +  +   
Sbjct: 122 MGADFALRVKGDSMIEAGIFDGDLVFIRQQSSVRNGKIAAVRLTEWNEASLKKIFVKNDN 181

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            I L   N  Y        ++E I   +
Sbjct: 182 VI-LYPCNPDYEPIV--TRNVEIIGECV 206


>gi|320006295|gb|ADW01324.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus phage Sha1]
          Length = 234

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 30/240 (12%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI---F 59
             ++ +I + + ++ +  NLT S LAR+  +  ++ ++        + R     ++    
Sbjct: 1   MRTNNEIVDTLVKLKDEQNLTLSELARRVNMAKSALSRYFN-----KTREFPLNNVDAFA 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K L  T E I        +    ++KK   I  +  P      +  +           V 
Sbjct: 56  KALHTTPEYILGFEKDEVAPLTNSDKKLIRINKMLTPDRQQNVYNYADNQLREQNNTIVR 115

Query: 120 VPEIRSPHNGIYA-------------------IQTQDTRHKTQDTSMLPLYRKGDILILN 160
           +P  +    G  +                   +   D   +    SM PL+    I+ + 
Sbjct: 116 MPRTQIKLLGAVSAGTGEELQDDTTEVDYTGTVPEYDYALQVNGDSMEPLFTDQQIIFVK 175

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            + +   G  ++     G    K      G   +L+SLN  Y    V  ++  +    ++
Sbjct: 176 YSEEAFNGQIVIAYVD-GKAYVKKYH-CNGSKCELVSLNSKYDPIDVTGNENFKIKGVVV 233


>gi|154686198|ref|YP_001421359.1| LexA repressor [Bacillus amyloliquefaciens FZB42]
 gi|166224553|sp|A7Z552|LEXA_BACA2 RecName: Full=LexA repressor
 gi|154352049|gb|ABS74128.1| LexA [Bacillus amyloliquefaciens FZB42]
          Length = 206

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 57/226 (25%), Gaps = 34/226 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           MT  S ++  I   I    +     PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIR--- 57

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                                   +    E+ +     +   P          +    N 
Sbjct: 58  ---------------RDPTKPRAIEVLDEEEVQIPKSQVVNVPVIGKVTAGIPITAVENI 102

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
                +P+   P              +    SM+       D +I+      N G+ ++ 
Sbjct: 103 DEYFPLPDRMVPPG------EHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVA 156

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K         + L   N       ++   +  + +++
Sbjct: 157 MTEDDEATVKRFYK-EDNYVRLQPENPTMEPIILQN--VSILGKVI 199


>gi|149911913|ref|ZP_01900512.1| putative transcriptional regulator [Moritella sp. PE36]
 gi|149805006|gb|EDM65034.1| putative transcriptional regulator [Moritella sp. PE36]
          Length = 250

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 60/246 (24%), Gaps = 33/246 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----NRWPSTESIFKILAAT 65
            E I  +     +T    +    +  ++  K +            +  + E +FK     
Sbjct: 4   GEKIKAVRNSLGMTQQKFSEFTDISISTLKKVESGVSNPNIAVIEKIIAKEELFKYSFWL 63

Query: 66  NETICQLLDLP--------------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                +                    +       +      ++                 
Sbjct: 64  LSERSEPKLGQISPLDVDQIDTSGLHNINVNDRDEVNRPTPIFKNKDKKHIELPFYEISA 123

Query: 112 GNKW----NTVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
                        P+  S                         SM P  + G ++++N  
Sbjct: 124 SAGVGLLAEVEERPKTISFEPHWLRNEIGVCPNNVFLMLVDGDSMQPTLKNGSMIMVNRD 183

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-----EMSDIEWIAR 217
           +     D + +     +++ K L    G  I + S N  Y    +     +  ++  I R
Sbjct: 184 VDNLS-DGVYVMRHDNNLLVKRLQMLPGGIIRVKSDNTMYDPWEITKSQLDGEELALIGR 242

Query: 218 ILWASQ 223
           ++W  Q
Sbjct: 243 VVWTGQ 248


>gi|289553495|ref|ZP_06442705.1| repressor lexA [Mycobacterium tuberculosis KZN 605]
 gi|289438127|gb|EFD20620.1| repressor lexA [Mycobacterium tuberculosis KZN 605]
          Length = 216

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I + I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 11  QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVN 70

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   L  +    G     +   +P+L    +G                +   +P  
Sbjct: 71  VRGADDAALPPVTEVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPLPRE 124

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +      K    SM       GD +++      + GD +      G+   
Sbjct: 125 LVG-------EGTLFLLKVIGDSMVEAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 176

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G  + LM  N  +       +D   + +++
Sbjct: 177 KTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 210


>gi|284048358|ref|YP_003398697.1| transcriptional repressor, LexA family [Acidaminococcus fermentans
           DSM 20731]
 gi|283952579|gb|ADB47382.1| transcriptional repressor, LexA family [Acidaminococcus fermentans
           DSM 20731]
          Length = 215

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 58/217 (26%), Gaps = 29/217 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +I + I +    +   PS   +    GL  ++                   ++ K+  
Sbjct: 19  QSQILDFIRQYIFNNGYPPSVREIGSAVGLSSSASVH---------------NNLKKLAE 63

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A   +        +        ++K +  +    +   G     +    N  +T  +P  
Sbjct: 64  AGFVSWDPEKPRTYGLREEISWRKKSMVPVPLVGAVHAG---DPMLAVENIEDTYPIPLD 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                              +  SM        D + +        GD ++      +   
Sbjct: 121 LIG------CSEDVFMMVVEGDSMKNAGILDHDYVFVRKQNYATNGDIVVALFNGEETTI 174

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K       + I L   N  YP   V   +IE   +++
Sbjct: 175 KRYFREL-KQIRLQPENDAYPPI-VGTDNIEIKGKVI 209


>gi|308069329|ref|YP_003870934.1| LexA repressor [Paenibacillus polymyxa E681]
 gi|310642375|ref|YP_003947133.1| sos-response repressor and protease lexa [Paenibacillus polymyxa
           SC2]
 gi|305858608|gb|ADM70396.1| LexA repressor [Paenibacillus polymyxa E681]
 gi|309247325|gb|ADO56892.1| SOS-response repressor and protease LexA [Paenibacillus polymyxa
           SC2]
          Length = 208

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 32/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M+  S   + I E I          PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MSKISSRQQAILEFIRNEVRLKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +      +L            K    L                 T N 
Sbjct: 61  TK--PRAIELLGQDESDNSNLINYSISRVPVVGKVTAGLPIT-------------ATENI 105

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P+        +  + +         SM       GD +I+      + GD ++ 
Sbjct: 106 EDYFPLPQH-------FVGEDKIFMLSVVGESMIEAGIANGDYVIVRQQQTADNGDIVVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +   I L   N  +    +    +  + +++
Sbjct: 159 MTDEDEATVKTFYKEKD-HIRLQPENPAFEPLRLTH--VSILGKVV 201


>gi|288817843|ref|YP_003432190.1| putative phage repressor [Hydrogenobacter thermophilus TK-6]
 gi|288787242|dbj|BAI68989.1| putative phage repressor [Hydrogenobacter thermophilus TK-6]
 gi|308751440|gb|ADO44923.1| putative phage repressor [Hydrogenobacter thermophilus TK-6]
          Length = 220

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 67/212 (31%), Gaps = 20/212 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + ++ +   L+   LA+  GL  +  +           R  S   + KI    N  
Sbjct: 16  IGEKLKKLLQEKGLSIYRLAKLTGLTQSGLSMIINNQ-----RAVSPAILRKIAETLNIP 70

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               ++   +       +  E   +  P               G     +   +  +   
Sbjct: 71  EVYFIEEEPTKEYPPSPEVIEREYIAIPIITG----------VGAGGEVIT--DDYTLIK 118

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLIS 187
                +   +  + +  SM P   K  +++++    Q+  G   L   +   +  + +  
Sbjct: 119 RTQLPKKTVSAFEVEGDSMEPTIPKDWLVLVDPTDLQLYEGGIFLFASQGNGLFIRRVHK 178

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +  +L+  N  Y    +   +I+ + R+L
Sbjct: 179 VDNQ-WELVPDNRKYAPQKLT-EEIKVLGRVL 208


>gi|126444083|ref|YP_001063360.1| peptidase [Burkholderia pseudomallei 668]
 gi|126223574|gb|ABN87079.1| helix-turn-helix motif:Peptidase S24, S26A and S26B [Burkholderia
           pseudomallei 668]
          Length = 222

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 15/221 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + + +    +   +  S LAR+ G+   + +              + E++ K+ +A +
Sbjct: 2   KTLADRLRAALQEAQMNQSELARRVGVTRGAVSFWLTSATT----SLAGENLLKVASALS 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVP 121
            +   L          T ++        +P         S    TG        +   + 
Sbjct: 58  VSPNWLATGRGRMKPATLQEISLQENPEYPAIRRVKIKISAGI-TGYGIEPLEEDHAPIV 116

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             RS +        +    K    SM P    GD +++NSA               G++V
Sbjct: 117 FHRSWYESNGYDPEKLLAIKVAGASMEPGLYDGDWVVVNSADTSPRDGVAFALSFDGEVV 176

Query: 182 AKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219
            K L           S N     Y    +   D   I R++
Sbjct: 177 IKRLFR-TEGHWVAASDNQDKRIYRDRPLN-GDTFIIGRVI 215


>gi|317133873|ref|YP_004089784.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
 gi|315450335|gb|ADU23898.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 208

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 21/216 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + I + I     +  L+ + LA K G    +S NK +  G     R      + KI    
Sbjct: 3   ETIGKRIKEARIKKGLSQTELAGKLGYKSRSSINKIETGG-----RDIPKSQVVKIAEIL 57

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + T   L+    S       +EK   +  +    +G         +G+    +       
Sbjct: 58  DLTPSYLMGWENSPAHNILSREKIHMIPVYNSIDAGFKTYDSSDISGHLPLYIENDSDV- 116

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                            ++ SM P    GD ++++    V+ G   ++       + K +
Sbjct: 117 ---------KNTICVTVREQSMSPKIEDGDTIVVHRQNHVDNGKIAIVMIGEN-TIVKRV 166

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218
              R   + L S N  YP   +E S+   ++ +  +
Sbjct: 167 DFNRD-RLILTSYNPEYPPMIIEGSELTNVKVVGLV 201


>gi|239832032|ref|ZP_04680361.1| LexA repressor [Ochrobactrum intermedium LMG 3301]
 gi|239824299|gb|EEQ95867.1| LexA repressor [Ochrobactrum intermedium LMG 3301]
          Length = 248

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 61/236 (25%), Gaps = 18/236 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +    ++   I    +   + PS    K  LD  S +   R       R      P+ 
Sbjct: 8   MLTRKQHELLLFIHERLKETGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 67

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-------- 107
               ++L   +     L           E    + P    P   +    +          
Sbjct: 68  ARALEVLRLPDSIAPGLNAQKKFAPSVIEGSLGKAPPPPPPARPAPVATNDDTSATVSVP 127

Query: 108 ---VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
                  G   + +                 +    + +  SM+      GD +I+    
Sbjct: 128 VMGRIAAGVPISAIQNQTHSLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGD 187

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             N G+ ++      +   K    +   SI L + N  Y         +    +++
Sbjct: 188 SANPGEIVVALVDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVRVQGKLV 242


>gi|169630121|ref|YP_001703770.1| LexA repressor [Mycobacterium abscessus ATCC 19977]
 gi|229621222|sp|B1MCZ5|LEXA_MYCA9 RecName: Full=LexA repressor
 gi|169242088|emb|CAM63116.1| Probable repressor LexA [Mycobacterium abscessus]
          Length = 224

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 55/217 (25%), Gaps = 19/217 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I E I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 18  QRTILEVIRASVNERGYPPSIREIGDAVGLTSTSSVAHQLRTLEQKGFLRRDPNRPRAVD 77

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                             + +  E       F P          +       +   +P  
Sbjct: 78  VRGIDDAGTPSATTDVIGSGDLPE-----PTFVPVLGRIAAGGPILAEEAVEDVFPLPRE 132

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +      K    SM+      GD +++      + GD +      G+   
Sbjct: 133 LVG-------EGSLFLLKVVGESMVDAAICDGDWVVVRQQNVADNGDIVAAMID-GEATV 184

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K         + LM  N  +       +D   + +++
Sbjct: 185 KTFKR-TSGQVWLMPHNPLFEPI--PGNDAAILGKVV 218


>gi|255067367|ref|ZP_05319222.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC
           29256]
 gi|255048337|gb|EET43801.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC
           29256]
          Length = 218

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +K I + I +  +    T   LA+K   +   + ++ +    +     P+ E+++++   
Sbjct: 2   NKTIGQRIRQKRKEFKWTQQELAKKLKDISHVAISQWESNTTK-----PNAENLYELSQV 56

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
               +  LL          E     +  +    +      D       N    +  P   
Sbjct: 57  LGCDLGWLLK------GEGEDTNTNVVFIEDSNNRKIPVLDVAQIENWNLRIPIPNPIKG 110

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           +          +    K    SM P + +GD+++++   +   G+ ++ +     +  K 
Sbjct: 111 AYLMSNIHDPNKCFALKISGDSMNPDFVEGDLIVVDIEQKPEPGEFVVARIDKDVVFRKY 170

Query: 185 LISR----RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +            L  LN  +P  +     IE I  ++
Sbjct: 171 QVVSSVNGEPECFSLSPLNRDFPPFSSSRHTIEIIGTMV 209


>gi|226312895|ref|YP_002772789.1| LexA repressor [Brevibacillus brevis NBRC 100599]
 gi|254809089|sp|C0ZES6|LEXA_BREBN RecName: Full=LexA repressor
 gi|226095843|dbj|BAH44285.1| LexA repressor [Brevibacillus brevis NBRC 100599]
          Length = 207

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 33/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M+  S   + I E I +        PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MSKLSSRQQAIIEFIRKEVRDKGYPPSVREIGEAVGLASSSTVHGHLARLEKKGLIRR-- 58

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                     T     +LL          E     +P++    +G             + 
Sbjct: 59  --------DPTKPRAIELLSDEDRFQDNFEDSVVRVPVIGKVTAGQPIT------AIEDV 104

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
                +P+     + +Y         +    SM+      GD +I+      N GD ++ 
Sbjct: 105 EEYFPLPDNIVTSDKVY-------MLRVSGNSMIDAGILDGDYVIVRQQHVANNGDIVVA 157

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       +    +  + +++
Sbjct: 158 MTEEDEATVKRFFKEKN-HFRLQPENATMEPIIL--EHVTILGKVI 200


>gi|268596517|ref|ZP_06130684.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268550305|gb|EEZ45324.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
          Length = 223

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 18/221 (8%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
           A+R N   +  +R     P   N+         +      +  +I            D P
Sbjct: 3   ADRFNGNQAEFSRAINKAPAQINQWLNGYRNIGD---GVAAQIEIALGLPRGWVDGNDKP 59

Query: 77  FSDGRTTEKKEKEIPLLYFPPS--------GSGGFFDSGVFPTGNKW-NTVG------VP 121
                + +     I  +    S            F+       GN + + +       + 
Sbjct: 60  GIPVDSIKSNATVIGSVDAWDSKTPLSDDDCEVPFYKDVCLSAGNGFSDEIEDYNGYKLR 119

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             +S                    SM P++  G  L +N+A ++    ++     +G + 
Sbjct: 120 FSKSTLRRHGINPDDVVCVSADGDSMEPVFPDGATLGINTADKMIKDGKIYAINHSGLLR 179

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
            K+L       + + S N  Y  +T  +  +  I R+ W S
Sbjct: 180 TKILQKLPDNQVRIKSYNPEYKDETASLDSLTVIGRVFWWS 220


>gi|303251516|ref|ZP_07337691.1| hypothetical protein APP6_0720 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253708|ref|ZP_07535574.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidase) [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|302649636|gb|EFL79817.1| hypothetical protein APP6_0720 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306858820|gb|EFM90867.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidase) [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 217

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 60/216 (27%), Gaps = 24/216 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-- 68
           + +    +  NL    +A   G    +             R P+ + +  ++  T     
Sbjct: 7   QYVREKMQAQNLRQDDIAETMGKTQGAIGHWLTG-----KRTPNFDDVATMINITGIDKV 61

Query: 69  --ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                     F    +    +K           +G + +   +   N +  +        
Sbjct: 62  ILNGDGTIEDFDPNVSVINIKKSRSYPLISSIQAGTWTEVFDYRDSNGYEYIDTEIDAGE 121

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                         +    SM P + +GD+++++   Q   GD +      G+   K   
Sbjct: 122 ---------DAFFLRISGLSMEPKFSEGDLVLIDVRKQPRPGDFVAAVNGNGEATLKRYR 172

Query: 187 SR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                        +L+ LN  +P  +    DI  I 
Sbjct: 173 ELGDLSPSGNPHFELVPLNPDFPTLSSMKQDIRIIG 208


>gi|226940427|ref|YP_002795501.1| prophage repressor protein [Laribacter hongkongensis HLHK9]
 gi|226715354|gb|ACO74492.1| Putative prophage repressor protein [Laribacter hongkongensis
           HLHK9]
          Length = 233

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 22/211 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E +        LT   LA   G    + +  +          PS   +  I A +N 
Sbjct: 37  KINEWVRIARANAKLTQQQLADVLGCTKANVSAWENG-----RHEPSYMQMMSISALSNT 91

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                      +         E+P++ +  +G+         P G    TV        H
Sbjct: 92  P-----LPYDKNVAPGPFVGGEVPIISWVQAGNFESVVDNFQP-GFAEETVTATVQVRRH 145

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                        +    SM P +++GDILI+   ++   G  ++ K    +   K L+ 
Sbjct: 146 ---------TYALRVHGDSMEPDFKEGDILIVEPEMEAVHGSYVIAKNGDNEATFKKLV- 195

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           + G    L  LN  YP+ +++ S I+ +  +
Sbjct: 196 QDGGDWYLKPLNPAYPMKSLDGS-IKIVGVV 225


>gi|153800394|ref|ZP_01954980.1| HTH-type transcriptional regulator for conjugative element SXT
           [Vibrio cholerae MZO-3]
 gi|124124020|gb|EAY42763.1| HTH-type transcriptional regulator for conjugative element SXT
           [Vibrio cholerae MZO-3]
          Length = 215

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 29/227 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + S     E ++   +   +T S LAR+ G+   S ++          R   T  I +
Sbjct: 1   MKTLS-----ERLNHALQLTGVTQSELARRIGIKQQSISQICSGKS---ARSRYTMQIAE 52

Query: 61  ILAATNETICQLLDLPF---SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
            L      +            +       +  IPL+ +  +G       G F   +    
Sbjct: 53  ALRVNAHWLATGDGEIGLGVGNVEVGPDIKGRIPLINWVQAGDWTEIAEG-FAHEDAEEW 111

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDRLL 172
             V                    + +  SM          +G I++++  +  + G  ++
Sbjct: 112 REVTGKAHEG---------CFALRVKGDSMENPSGKKSIPEGAIIVVDPEMPYSSGSLVV 162

Query: 173 IK-PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                + +   K L+    +   L  LN  YP   +   +   +  +
Sbjct: 163 ACLDDSIEATFKQLVIDGDQRY-LKPLNPQYPAIPIN-DNCTIVGVV 207


>gi|308173762|ref|YP_003920467.1| LexA [Bacillus amyloliquefaciens DSM 7]
 gi|307606626|emb|CBI42997.1| LexA [Bacillus amyloliquefaciens DSM 7]
 gi|328553313|gb|AEB23805.1| LexA repressor [Bacillus amyloliquefaciens TA208]
 gi|328911900|gb|AEB63496.1| LexA repressor [Bacillus amyloliquefaciens LL3]
          Length = 206

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 61/227 (26%), Gaps = 36/227 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S ++  I   I    +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     ++L                     E+ +     +   P          +    N
Sbjct: 61  TKPRAIEVLD-------------------EEEVQIPKSQVVNVPVIGKVTAGIPITAVEN 101

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +P+   P              +    SM+       D +I+      N G+ ++
Sbjct: 102 IDEYFPLPDRMVPPG------EHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVV 155

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         + L   N       ++   +  + +++
Sbjct: 156 AMTEDDEATVKRFYK-EDNYVRLQPENPTMEPIILQN--VSILGKVI 199


>gi|301155074|emb|CBW14537.1| phage-related repressor protein [Haemophilus parainfluenzae T3T1]
          Length = 224

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 55/221 (24%), Gaps = 9/221 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S          +    +L+ +  A+  G+   +  K          +     +   
Sbjct: 1   MPDLS-----TRFKTLLYEKHLSMNAFAKMIGVSQPAIAKIANGET-LNPKNILEIAAAL 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119
            +        +    P        + +    +            +     PT     +  
Sbjct: 55  NVDPHWLKTGEGDPDPSYRIVEVSEPQNPNTVRIDILDVEASAGNGAYLSPTEQGLLSQE 114

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                       A          +  SM P    GD+L ++ +      D L +    G 
Sbjct: 115 FDLTFFRQQFGRADAKYLKLITVKGDSMAPTLESGDLLYVDISENYFAADGLYVFTFDGQ 174

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              K L       +  +S N  Y   T  +  D+    R++
Sbjct: 175 TFIKRLQKVGKEMLV-ISDNPTYKEWTFTQDDDVFIHGRVI 214


>gi|312139399|ref|YP_004006735.1| lexa repressor [Rhodococcus equi 103S]
 gi|325672718|ref|ZP_08152414.1| SOS regulatory protein LexA [Rhodococcus equi ATCC 33707]
 gi|311888738|emb|CBH48050.1| LexA repressor [Rhodococcus equi 103S]
 gi|325556595|gb|EGD26261.1| SOS regulatory protein LexA [Rhodococcus equi ATCC 33707]
          Length = 242

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 58/217 (26%), Gaps = 21/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +K+ E I          PS   +    GL  TS    +   +E +       +  + + 
Sbjct: 38  QRKVLEVIRASVAERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDANRPRAVD 97

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  +          T      + P   F P          +       +   +P  
Sbjct: 98  VRGLDGIEDA-------ATERDGSGDRPAPTFVPVLGRIAAGGPILAEEAVEDVFPLPRE 150

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     Q      K    SM+      GD +++        GD +      G+   
Sbjct: 151 LVG-------QGSLFLLKVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID-GEATV 202

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G+ + LM  N  +       +D   + +++
Sbjct: 203 KTFKR-TGKDVWLMPHNPLFEPI--PGNDAAILGKVV 236


>gi|261885728|ref|ZP_06009767.1| hypothetical protein CfetvA_11654 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 257

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 78/253 (30%), Gaps = 45/253 (17%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             + + I  + ++H  +   L +++G+  ++    K      +++ P+ + + KI  A  
Sbjct: 4   DILAQNIRFLLKKHKWSEDELVKRSGVGKSTIQLYK----SKKSKNPTVDKLTKIANAFK 59

Query: 67  ETICQ-------------------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            +                                      ++ +      L       + 
Sbjct: 60  VSSDDLKNKNLSISMSISQKENISQNVHKFPKMSISKSNLSSNEPLNTSNLKKSQDIINI 119

Query: 102 GFFDSGVFPTGNKWN-TVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRK 153
            +F+      G+        P + S       +                +  SM P    
Sbjct: 120 PYFEDTYASAGSGIINYDETPIVMSFDINFLRVFLKITGSLNNLHIINAKGDSMEPTING 179

Query: 154 GDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEM 209
           G++L +N       V  G   +     GDI  K +      +S+ L+S N  Y    +E 
Sbjct: 180 GELLYINPYDNEQSVISGCIYV-INYDGDIFVKRVDKNPVTKSLTLISDNPKYEPIKIEA 238

Query: 210 SDI---EWIARIL 219
           +D+   + I R++
Sbjct: 239 TDLINCKIIGRVV 251


>gi|85372990|ref|YP_457052.1| prophage MuMc02-like, S24 family peptidase [Erythrobacter litoralis
           HTCC2594]
 gi|84786073|gb|ABC62255.1| prophage MuMc02-like, peptidase, family S24 [Erythrobacter
           litoralis HTCC2594]
          Length = 211

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 15/217 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + E +DR+  +     + ++R  G +P    +  +    G  R    E    +     
Sbjct: 2   EHVREELDRLILKGGYGYASISRLLGRNPAYVQQFIKR---GSPRKLDDEDRKTLACFFG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                                 +  +               V  +       G  E    
Sbjct: 59  VD--------EQLLGGPANPVTDGMVEIPVLDVEASAGFGAVAASETAHTRFGFDERWLR 110

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185
           H    A     +    +  SM P    GD ++++++       D + +      +V K +
Sbjct: 111 HLTS-AKSASLSIVGVKGDSMEPTLSDGDEVLVDASDHGSRLRDGIYVLRSDDALVVKRI 169

Query: 186 ISRRGRS-IDLMSLNCCYPVD-TVEMSDIEWIARILW 220
             + G   I + S N  YP    ++ S++  + R++W
Sbjct: 170 AIKPGGRQITIASDNPAYPTWHDMDRSEVHVVGRVIW 206


>gi|58337556|ref|YP_194141.1| LexA repressor [Lactobacillus acidophilus NCFM]
 gi|71648701|sp|Q5FJL4|LEXA_LACAC RecName: Full=LexA repressor
 gi|58254873|gb|AAV43110.1| transcriptional repressor protein [Lactobacillus acidophilus NCFM]
          Length = 208

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 29/221 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           +     +I   I    E     P+   +    GL  TS        +E +       +  
Sbjct: 6   SDTKQLEILRYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLSRLERKGFLIKDATKP 65

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + L  T E   +L             K KEIP++    +G             +      
Sbjct: 66  RALEITAEGKTELGI-----------KPKEIPVVGVVTAGQPI------LAVEDISEYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P          +   +    K    SM+      GD +I+      N G+ ++      
Sbjct: 109 LPPDLE------SDAGELFMLKVHGNSMIKAGILNGDNVIVRKQSTANNGEIVVAMTDEN 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K           L   N       ++   +  + +++
Sbjct: 163 EATVKRFFK-EDDHYRLQPENDTMAPIILQ--QVSILGKVV 200


>gi|16800408|ref|NP_470676.1| LexA repressor [Listeria innocua Clip11262]
 gi|25453099|sp|Q92C51|LEXA_LISIN RecName: Full=LexA repressor
 gi|16413813|emb|CAC96571.1| lin1340 [Listeria innocua Clip11262]
 gi|313619169|gb|EFR90948.1| repressor LexA [Listeria innocua FSL S4-378]
 gi|313623945|gb|EFR94049.1| repressor LexA [Listeria innocua FSL J1-023]
          Length = 204

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            + I+E I    +     PS   +    GL  +S        +EG+    R P+     +
Sbjct: 7   QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E E P +   P          +    N      +
Sbjct: 67  IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIEEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +      A +T     +    SM+      GD +I+        G+ ++      +
Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +  + +++
Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPIILNN--VTILGKVI 197


>gi|148265766|ref|YP_001232472.1| putative prophage repressor [Geobacter uraniireducens Rf4]
 gi|146399266|gb|ABQ27899.1| putative prophage repressor [Geobacter uraniireducens Rf4]
          Length = 216

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 20/214 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  + +  ++T    A   G+     +  +R       + PS   +  +       
Sbjct: 12  IGLRIKELRQAKDMTQKEFADSLGIVQGFLSGIERG-----KKSPSDTLLIALCHLYKIN 66

Query: 69  ICQLLDLPFSDGRTTEKKEK---EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              L          T+  +K   E      P                +  + V +P    
Sbjct: 67  KEWLYTGRGDMFGKTQLPDKLIEEFVTTRIPLLKRIPQGFPDSLKEEDICDYVSLPNG-- 124

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                           T    M P  R GD++I NS  +++  + +L+  R  + + +  
Sbjct: 125 --------PQGCYAIITYGDFMAPTIRDGDLVIFNSGGELSNKNIVLVNNRWNEAILRRY 176

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G  I     N  Y     + ++ + I  ++
Sbjct: 177 -RVAGNEIFFSPDNPAYAPFK-QDNNTKIIGTVV 208


>gi|303327832|ref|ZP_07358272.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp.
           3_1_syn3]
 gi|302862193|gb|EFL85127.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp.
           3_1_syn3]
          Length = 227

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 62/221 (28%), Gaps = 25/221 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + +   +  L    LA + G+  T+  + +   +      P  E   ++  A   ++ 
Sbjct: 17  ERLRQRRVQLALRKQDLAAQVGVSLTTIQQYENGQL------PKGEFAVRLSEALRCSLD 70

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRSPHN 128
            LL              +   +                   G         +    +   
Sbjct: 71  WLLAGKGDADGDVLDTPEARLV--------MVPMVEARLSAGTGSFETGGEILRHYAFRW 122

Query: 129 GIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                +         +    SM P     D+++++ +       R+      G +  K++
Sbjct: 123 DFLHRKGNPAQMVLLRVSGDSMQPRILHNDVVLIDQSQSDPVPGRIYAVGVEGMVYLKIV 182

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARILWA 221
            +     + L S+N  Y     +  +     +  I R +W 
Sbjct: 183 NAMP-GKLILTSVNPDYAPIEADTCEQLADLVRIIGRAVWV 222


>gi|116872733|ref|YP_849514.1| LexA repressor [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123460980|sp|A0AIA3|LEXA_LISW6 RecName: Full=LexA repressor
 gi|116741611|emb|CAK20735.1| LexA transcription repressor protein [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 204

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            + I+E I    +     PS   +    GL  +S        +EG+    R P+     +
Sbjct: 7   QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E E P +   P          +    N      +
Sbjct: 67  IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIEEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +      A +T     +    SM+      GD +I+        G+ ++      +
Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQNSAINGEIVVAMTDENE 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +  + +++
Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPIILNN--VTILGKVI 197


>gi|66395748|ref|YP_240112.1| ORF019 [Staphylococcus phage 37]
 gi|62636171|gb|AAX91282.1| ORF019 [Staphylococcus phage 37]
          Length = 208

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 24/225 (10%)

Query: 3   SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              +K++    I R  + +N+    L+    +  T+ +       +   R    E +   
Sbjct: 1   MLGNKEVMAKNISRFMKENNVDRKKLSDDLKVKYTTLSDWIN--AKTYPRIDKIELLADY 58

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
              T   + +  +    D             +   P  +       ++   N  + +   
Sbjct: 59  FNVTKADLVEDKEKQVLDTLP----------VKKIPVLAKISAGLPIYTEENLIDYIYF- 107

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                     A   ++   K    SM  L+  GDI+I+     V  G   ++     +  
Sbjct: 108 -----AKKDLAPGKEEFGLKVSGDSMDKLFDDGDIVIVEKDSAVENGQLGVVMINGYNAT 162

Query: 182 AKVLISRRGRSIDLMSL--NCCYPVDTV-EMSDIEWIARILWASQ 223
            K +    G  I L+    N  +      E  ++  I RI+ ASQ
Sbjct: 163 VKRV-RYNGDQIILIPESNNTNHYPQVYGENDEVIIIGRII-ASQ 205


>gi|258511546|ref|YP_003184980.1| transcriptional repressor, LexA family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478272|gb|ACV58591.1| transcriptional repressor, LexA family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 202

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 61/226 (26%), Gaps = 38/226 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M+  + ++  I E I +        PS   +    GL   ++ +   +R   +G  R   
Sbjct: 1   MSGLTARQRAILEFIRKNIREKGYPPSVREIGEAVGLASSSTVHGHLERLQQKGYLR--- 57

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                                       T+ +  E+ +    P         G    G  
Sbjct: 58  -------------------------RDPTKPRALELLVDDEEPGDVVLAPIVGRVTAGLP 92

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            + +   E   P     A   +    +    SM+      GD+ I+      + GD ++ 
Sbjct: 93  ISALEDIEGYLPLPRDVAKGDEVFALRVVGESMINAGILDGDLAIVRRQTSADNGDIVVA 152

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K         + L   N            +  + +++
Sbjct: 153 MTDEDEATIKRFYR-EDGRVRLQPENDAMSPLYFPN--VTILGKVI 195


>gi|261886490|ref|ZP_06010529.1| hypothetical protein CfetvA_16566 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 248

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 76/246 (30%), Gaps = 39/246 (15%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + I  +    + T   LA+ +G+   S    +    +G     +T  + KI  A N 
Sbjct: 2   NLAQKIKLLRSEKDWTQYDLAQNSGVSLQSIKMYEAGKNKG----ITTTILKKIAHALNV 57

Query: 68  T-------------------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                                     +  S   +  K      L     + +  +F+   
Sbjct: 58  NVEFFLDSEFGSPISSPISSPISSPIVRQSPNLSPSKPLNAPNLKMSQDTINIPYFEDTY 117

Query: 109 FPTGNKWN-TVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILN 160
              G+        P + S       +                +  SM P    G++L +N
Sbjct: 118 ASAGSGIINYDETPIVMSFDINFLRVFLKITGSLNNLHIINAKGDSMEPTINGGELLYIN 177

Query: 161 S---AIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI---E 213
                  V  G   +     GDI  K +      +S+ L+S N  Y    +E++D+   +
Sbjct: 178 PYENEQSVISGCIYV-INYDGDIFVKRVDKNPVTKSLTLISDNPKYEPIKIEVADLTNCK 236

Query: 214 WIARIL 219
            I R++
Sbjct: 237 IIGRVV 242


>gi|194099447|ref|YP_002002559.1| Putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae NCCP11945]
 gi|239999684|ref|ZP_04719608.1| Putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae 35/02]
 gi|240127870|ref|ZP_04740531.1| Putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268686265|ref|ZP_06153127.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|193934737|gb|ACF30561.1| Putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae NCCP11945]
 gi|268626549|gb|EEZ58949.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|317164955|gb|ADV08496.1| Putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 234

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 4/171 (2%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           PS  +   I       +  +              +  + + Y   S   G   +   P  
Sbjct: 64  PSEPTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 123

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           N +    +P  +S                    SM     +   + +++        ++ 
Sbjct: 124 NGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
              + G    K LI + G S+ + S N   YP +T  +  +  I R+ W S
Sbjct: 181 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWS 231


>gi|296283572|ref|ZP_06861570.1| prophage MuMc02-like, S24 family peptidase [Citromicrobium
           bathyomarinum JL354]
          Length = 211

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 15/217 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + E +DR+  +     + ++R  G +P    +  +    G  R    E    +     
Sbjct: 2   EHVREELDRLILKGGYGYASISRLLGRNPAYVQQFIKR---GSPRKLDDEDRKTLACFFG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                                 +  +               V  +       G  E    
Sbjct: 59  VD--------EQVLGGPANPVTDGMIEIPVLDVEASAGFGAVAASETAHTRFGFDERWLR 110

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185
           H    A     +    +  SM P    GD ++++S+       D + +      +V K +
Sbjct: 111 HLTS-AKSASLSIVGVKGDSMEPTLSDGDEVLVDSSDHGSRLRDGIYVLRSDDTLVVKRI 169

Query: 186 ISRRGRS-IDLMSLNCCYPVD-TVEMSDIEWIARILW 220
             + G   I + S N  YP    ++ +++  + R++W
Sbjct: 170 AIKPGGRQITIASDNPAYPTWHDMDRAEVHVVGRVIW 206


>gi|296273246|ref|YP_003655877.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299]
 gi|296097420|gb|ADG93370.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299]
          Length = 218

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 14/221 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
                +I E +  +     +        +A    L   +F   K       +      +I
Sbjct: 1   MLLVNEIIERLKDVLSTDGIKGKIFDKDVADALSLSQANFATMKNRSKIPFSNILDFCAI 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            KI      +I  LL             +  I         +GG            +  +
Sbjct: 61  KKI------SINWLLYNQNPGSLVDSTDKYWIKYFPEISVSAGGGAYDSD----ENYENI 110

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            VP       G                SM P     +I+ ++ +I+    D +       
Sbjct: 111 EVPPYFVDTLGGEQNLKNIEAINVIGDSMEPTLNSNNIIFVDKSIKSGFRDGIYAFTTNH 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +  K +  R    +D++S N  YP   ++  ++E + +++
Sbjct: 171 GLFVKRIQKRVDGKLDIISDNKDYPAQIMKSDELEILGKVV 211


>gi|237747825|ref|ZP_04578305.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379187|gb|EEO29278.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 221

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 73/220 (33%), Gaps = 8/220 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I +  ++ + T   L  ++G+   + +  +    +   R      I +    + + 
Sbjct: 3   LGKQIKKYRQQLDWTLEKLEEESGVPKGTISALEVRDSD---RSKYAPEIARAFGISVDQ 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +            + EK + +        +  GG  +  +    +             H 
Sbjct: 60  LMDENIDASEAVNSHEKSKGDDEHTIRQFNTGGGMGNGLILQEQSGIIENFRVSSAWLHA 119

Query: 129 GI--YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            I  ++             SM PL+  GD +I++  I+   G+         +   K L 
Sbjct: 120 NIKGHSSTKNLCIVTGYGESMKPLFNPGDPVIVDLQIKEYVGEFPYFFRIENEGFIKRLQ 179

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI--LWASQ 223
              G    ++S N  Y   T++   D E   ++  +W S+
Sbjct: 180 RVPGEGYRVLSDNPKYETWTIKQGMDFEIFGKVIKVWKSE 219


>gi|150396569|ref|YP_001327036.1| LexA repressor [Sinorhizobium medicae WSM419]
 gi|166224651|sp|A6U971|LEXA_SINMW RecName: Full=LexA repressor
 gi|150028084|gb|ABR60201.1| SOS-response transcriptional repressor, LexA [Sinorhizobium medicae
           WSM419]
          Length = 238

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   + PS         LA K+G+        +R  I      
Sbjct: 1   MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                + K+                 +                      + S      G 
Sbjct: 61  ARALEVIKLPEAYAGNPQVRRGFSPSVIEGSLGKPAAPAPAPKPAPPAENASVVVPVMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G   + +                 +    + +  SM       GD +I+ +A   + 
Sbjct: 121 IAAGVPISAIQNNMHDISVPIEMIGSGEHYALEIKGDSMIEAGILDGDTVIIRNASTASI 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K    +   SI L + N  Y         ++   +++
Sbjct: 181 GDIVVALIDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGKLV 231


>gi|300811613|ref|ZP_07092093.1| putative repressor LexA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497408|gb|EFK32450.1| putative repressor LexA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325685247|gb|EGD27365.1| SOS regulatory protein LexA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 206

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 65/215 (30%), Gaps = 19/215 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           KI   I +  ++  LT   LA   GL   T+    ++         P  + I  I  A +
Sbjct: 2   KIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSN-----PPAKRIPAIADALD 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++ +LL              K   L+    +        G    G    +    E    
Sbjct: 57  ISVSELL---------GNDDAKPKNLVDLADAKVISIPILGTIACGKPIFSEENYEGHLN 107

Query: 127 HNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                     +      Q  SM P    GD +I+     V  G+   +     +   K +
Sbjct: 108 KVYFGDPPTGELFALTCQGDSMAPYILDGDKVIVRKQETVENGEIAAVLIN-NEATLKTV 166

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
                +++ L+  N  Y    +      + + +++
Sbjct: 167 KYVGDKTL-LIPKNDAYDPLVLTPDNQNQVLGKVV 200


>gi|268595497|ref|ZP_06129664.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268597551|ref|ZP_06131718.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|293399346|ref|ZP_06643511.1| phage repressor protein, phage associated protein [Neisseria
           gonorrhoeae F62]
 gi|268548886|gb|EEZ44304.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268551339|gb|EEZ46358.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|291610760|gb|EFF39870.1| phage repressor protein, phage associated protein [Neisseria
           gonorrhoeae F62]
          Length = 229

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 4/171 (2%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           PS  +   I       +  +              +  + + Y   S   G   +   P  
Sbjct: 59  PSEPTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 118

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           N +    +P  +S                    SM     +   + +++        ++ 
Sbjct: 119 NGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 175

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
              + G    K LI + G S+ + S N   YP +T  +  +  I R+ W S
Sbjct: 176 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWS 226


>gi|169349664|ref|ZP_02866602.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552]
 gi|169293739|gb|EDS75872.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552]
          Length = 206

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 22/213 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I ++ +   LT   L    G+  ++  K +      R      E+I K+        
Sbjct: 3   GQRIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENN----RVENLKKETIQKLSEIFEVPA 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L +  ++  T              P  +     +G+F   N    + +PE       
Sbjct: 59  TYFLGIDETNQPTITNS-------ITIPLYNDISCGTGIFVDDNIDEYIALPESL----- 106

Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
              +  +         SM+      GD+++      +  GD             K     
Sbjct: 107 -LTLNKEYFCQYASGDSMIDENINPGDLIVFEKCNHLKNGDIGCFTLEDNIATCKKFYQD 165

Query: 189 RGR-SIDLMSLNCCYPVDTVEMSD---IEWIAR 217
                I L   N  Y    +   +      I +
Sbjct: 166 DDNQCIILQPANSSYSPLIINYENQNGFRIIGK 198


>gi|167565035|ref|ZP_02357951.1| putative transcriptional regulator [Burkholderia oklahomensis
           EO147]
          Length = 230

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 24/208 (11%)

Query: 29  RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88
           R AG+        KR  I      P  E +  I  AT  +I  LL        +    ++
Sbjct: 28  RAAGISDGLLQTIKRGSI------PKAEGLLAISEATGRSIDWLLGRVELANGSLVTADQ 81

Query: 89  EIPLLYFPPSGSGGFFDSGVFPTGNKW---------NTVGVPEIRSPHNGIYAIQTQDTR 139
                                  G  +          T+        H  ++A     + 
Sbjct: 82  AEANAASSE-FVYVPRYDVKASAGTGFWLGDEAKAKFTMAFRRHWVEH-YLHANPKDLSV 139

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
            +    SM P+  +GD +++N A   +  D + +    G ++ K L      ++ ++S N
Sbjct: 140 LRVHGDSMYPVLHEGDNILINHAQT-SPQDGIYVLRLDGQMLVKRLQWVGAATVRVISAN 198

Query: 200 CCYPVDTV------EMSDIEWIARILWA 221
             YP   V      +  +   + R++W 
Sbjct: 199 PDYPPYEVALSSPEDQREFCIVGRVVWY 226


>gi|170720494|ref|YP_001748182.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169758497|gb|ACA71813.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 229

 Score = 94.8 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 15/219 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-- 68
           + I    +   LT + LA   G++  S +  +R   +   R     +I +    +     
Sbjct: 5   DRIKAARKHARLTQAELAAMTGINQASISDLERGRSQ---RSSYNSTIARACGVSAIWLE 61

Query: 69  -ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125
                +                       P+    + +      G+     +V       
Sbjct: 62  AGIGTMLQNDDVPGFDAPGFDSNVAPALAPTRYFSYPEISWVQAGSPSEAMSVANIAACP 121

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKP-RTGDI 180
            H+            K   +SM       + +G ++++   I+   G  ++ +   + + 
Sbjct: 122 SHHSDVWAGENGFWLKVIGSSMTSQSGISFPEGVLILVAPDIEPRPGQYVVARMIDSNEA 181

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L+   G    L  LN  +P   ++    E +  ++
Sbjct: 182 TFKQLVRDAGD-FYLTPLNPAFPAKKMD-DTWEIVGTVV 218


>gi|290968677|ref|ZP_06560215.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781330|gb|EFD93920.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 226

 Score = 94.8 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +K + + I +  +++N+T   +A K G+  ++  + +     G     S E + KI    
Sbjct: 7   NKMVGKRIKKQRKQNNMTLKDIAVKLGVTESTVQRYE----TGNISNVSIEMLQKIGKIL 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +   LL    ++   ++ +  +   L    S    F            +++ +  I  
Sbjct: 63  LVSPAFLLGWDSAEKVVSDLEAHKHKFLDASISAGYPFTVD-------GVSSLPLVSIPD 115

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPR--TGDI 180
              G YA        K    SM  +   G  + + + I    V+ GD ++          
Sbjct: 116 VFLGKYATNKNIVVMKVNGDSMNKIIPNGSFIAVKTNIDVLSVSNGDIVVANVDGAENGY 175

Query: 181 VAKVLISRR-GRSIDLM--SLNCCYPVDTVEMSD---IEWIARIL 219
             K +        + L   S N  Y    + ++D   +  + +++
Sbjct: 176 TIKHIYKDAINNRVILRPNSTNLAYTDIVITLTDTQRLYIVGKVV 220


>gi|229845279|ref|ZP_04465411.1| putative phage repressor [Haemophilus influenzae 6P18H1]
 gi|229811732|gb|EEP47429.1| putative phage repressor [Haemophilus influenzae 6P18H1]
          Length = 229

 Score = 94.8 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 62/224 (27%), Gaps = 21/224 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +        L+ +  ++K G+   + +K  R          + ++I +I  A    
Sbjct: 4   LATRLQDTLYEQRLSVNAFSKKVGISQQAISKIIRGET------LNPKNIVEIATALGVD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRSP- 126
           +  L            +                            +       P I S  
Sbjct: 58  VNWLKTGEGD--SEIGRITAYCHSEKDNEHTLRVDLLDVNLAAYSSGIINAEYPNIVSSL 115

Query: 127 ---HNGIYAIQTQD-----TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                G   I  +         +    SM+P  ++ DI+ +++ I+   G+ +      G
Sbjct: 116 YFTEEGANRILGRTTTNGVYMFRVPTDSMVPTIKQTDIVFIDTNIKHYIGEGIYAFSLNG 175

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219
           +   K L       I  +S N  Y    +          I + +
Sbjct: 176 EEYIKRLQRLPTGVIRALSDNKHYEPFDITEELFDSAVIIGKFI 219


>gi|193066523|ref|ZP_03047566.1| CI protein [Escherichia coli E22]
 gi|192925845|gb|EDV80496.1| CI protein [Escherichia coli E22]
          Length = 217

 Score = 94.8 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 19/216 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS   I  +            
Sbjct: 8   RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 62

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                                +P             P    +       + S        
Sbjct: 63  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 117

Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                  + +  SM       P +  G +++++    V  GD  + +    +   K LI 
Sbjct: 118 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVELGDFCIARLGGDEFTFKKLIR 177

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             G+   L  LN  YP+          + +++ ASQ
Sbjct: 178 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 210


>gi|13470826|ref|NP_102395.1| LexA repressor [Mesorhizobium loti MAFF303099]
 gi|25453103|sp|Q98MD2|LEXA_RHILO RecName: Full=LexA repressor
 gi|14021569|dbj|BAB48181.1| SOS response regulator; LexA [Mesorhizobium loti MAFF303099]
          Length = 245

 Score = 94.8 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 62/242 (25%), Gaps = 26/242 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--------- 51
           M +    ++   I    +   + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQHELLMFIHERLKESGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 52  -------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
                         P   +  K   +  +       L         +            +
Sbjct: 61  ARALEVLRLPDSIAPGLNAAKKFSPSVIQGSLGQGGLGRQIKPAPSRLPAAGNDDDAVSA 120

Query: 99  GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
            S      G    G   + +              +  +    + +  SM+      GD +
Sbjct: 121 VSIPVM--GRIAAGVPIDAIQHQTHSISVPPDMIMGGEHYALEVKGDSMIDAGIFDGDTV 178

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           I+ +A   + G+ ++      +   K    +   SI L + N  Y         ++   +
Sbjct: 179 IIRNADTASPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGK 237

Query: 218 IL 219
           ++
Sbjct: 238 LV 239


>gi|68250056|ref|YP_249168.1| transcriptional regulator [Haemophilus influenzae 86-028NP]
 gi|145629482|ref|ZP_01785280.1| predicted transcriptional regulator [Haemophilus influenzae
           22.1-21]
 gi|145638978|ref|ZP_01794586.1| predicted transcriptional regulator [Haemophilus influenzae PittII]
 gi|68058255|gb|AAX88508.1| predicted transcriptional regulator [Haemophilus influenzae
           86-028NP]
 gi|144978325|gb|EDJ88089.1| predicted transcriptional regulator [Haemophilus influenzae
           22.1-21]
 gi|145271950|gb|EDK11859.1| predicted transcriptional regulator [Haemophilus influenzae PittII]
 gi|309750942|gb|ADO80926.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
          Length = 232

 Score = 94.8 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 16/229 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   ++ +  +       L +  G+      +          R    E+I K    T  
Sbjct: 3   DLASRLNELMAKQGKNIVDLQKAVGVTYEMARRYTLGTAT--PRDNKIEAIAKYFGVTPA 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNK------- 114
            +         +  T+  K+     L+           +  F+       GN        
Sbjct: 61  HLKYGTVDSLENQVTSNVKDVGSFDLWDRNTPLNSDEYAVPFYQDIRLAAGNGFADDIAD 120

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           +N   +   +S                    SM P+   G  + ++   +     ++   
Sbjct: 121 YNNFKLRFSKSTLRKQGVQYENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAI 180

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222
              G +  K+L +     + + S N   +P +  E+ DI  + ++ W S
Sbjct: 181 NHGGLLRIKLLYNMPNEQVKIRSYNTEEHPDEIAELQDISVLGKVFWYS 229


>gi|78221357|ref|YP_383104.1| putative prophage repressor [Geobacter metallireducens GS-15]
 gi|78192612|gb|ABB30379.1| putative prophage repressor [Geobacter metallireducens GS-15]
          Length = 216

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 58/216 (26%), Gaps = 22/216 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I  +     LT    A   G+     +  +R       + PS   +  +      + 
Sbjct: 13  GRRIKEIRINKGLTQKEFADSLGIVQGFLSGIER-----EKKTPSDTLLIALCNLYEISP 67

Query: 70  CQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             L        RT  +             P     G          +  + V +PE    
Sbjct: 68  SWLASGEGEMYRTPRRAGQPATSPGGEGIPLLERIGPEFPHRVGEDDIRDRVALPE---- 123

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                 +             M P  R GD++I     +   G+ +L+  R G+ + +   
Sbjct: 124 ------VSEGCYAIVAYGDFMAPTIRDGDLVIFRPGEEPQNGEVVLVTNRWGEAILRRY- 176

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220
             R   I     N  Y   T    +   I  +  +W
Sbjct: 177 RVRNGDIVYSPDNATYSPFT-PAPETRIIGTVAEVW 211


>gi|55820932|ref|YP_139374.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55822854|ref|YP_141295.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736917|gb|AAV60559.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55738839|gb|AAV62480.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
          Length = 229

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 16/222 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68
            + +  + E   ++ + +A+  G+  +S+   +    +   +  S    +F +      +
Sbjct: 4   GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63

Query: 69  ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +++++         +          +E+E      P      +        G  +   
Sbjct: 64  EHEIVEVYLELNEENRQEALRFTKALLEEQEAEKKKSPVIPLYSYKVFERLSAGTGYTY- 122

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +              D        SM P Y  G+++++        GD +      G
Sbjct: 123 -FGDGNYDEVFYDEEIDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDGD-VYAVDWDG 180

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +       + L+SLN  Y        +    I +I+
Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221


>gi|104783161|ref|YP_609659.1| transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112148|emb|CAK16875.1| putative transcriptional regulator [Pseudomonas entomophila L48]
          Length = 248

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 34/249 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   + +   +  + +RH L+P+ L R+ G+  ++ ++        +   PS + + +
Sbjct: 1   MHAMQKRNVASVLRALLDRHGLSPTELHRRTGVPQSTLSRILSE----KIVDPSDKHVSR 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL------------LYFPPSGSGGFFDSGV 108
           I      +  QL                 +                     S  F     
Sbjct: 57  IAEYFGVSTDQLRGRAELGEPREAAALTPVHAALSDISLWDDETPVEDDEVSVPFLREVE 116

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSA 162
              G+    +   E      G  +++              +  SMLP+ R G  + +N+ 
Sbjct: 117 LAAGSGRFVIEESENARLRFGKRSLRHNGVQFDHAKCVTVRGNSMLPVLRDGATVGVNTG 176

Query: 163 I----QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV-----EMSDI 212
                 +  GD L      G +  K +       I L S N   +P +       +   I
Sbjct: 177 KCTIGDIIDGD-LYAINHNGQLRVKQVYRLPTG-IRLRSFNRDEHPDEDYSFQQMQEEQI 234

Query: 213 EWIARILWA 221
             +  + W 
Sbjct: 235 SLLGHVFWW 243


>gi|110804331|ref|YP_687851.1| putative prophage repressor CI [Shigella flexneri 5 str. 8401]
 gi|291281104|ref|YP_003497922.1| SOS-response transcriptional repressor [Escherichia coli O55:H7
           str. CB9615]
 gi|300898212|ref|ZP_07116568.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|110613879|gb|ABF02546.1| putative prophage repressor CI [Shigella flexneri 5 str. 8401]
 gi|284920569|emb|CBG33631.1| putative prophage repressor [Escherichia coli 042]
 gi|290760977|gb|ADD54938.1| SOS-response transcriptional repressor [Escherichia coli O55:H7
           str. CB9615]
 gi|300358089|gb|EFJ73959.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|320654501|gb|EFX22535.1| SOS-response transcriptional repressor [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659998|gb|EFX27537.1| SOS-response transcriptional repressor [Escherichia coli O55:H7
           str. USDA 5905]
 gi|324019900|gb|EGB89119.1| peptidase S24-like domain protein [Escherichia coli MS 117-3]
          Length = 210

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 24/218 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +     +  L  + LA+K G    S  + +    + R R+     + ++ +A   +
Sbjct: 3   ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRF-----LPELASALGVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSP 126
           +  LL+             +             G +     P    +             
Sbjct: 57  VDWLLNGTSDSNVRFVGHVEPKGKYPLISMVRAGSWCEACEPYDIKDIDEWYDSDVNLL- 115

Query: 127 HNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181
                         K +  SM         +G ++++++  +   G  ++       +  
Sbjct: 116 --------GDGFWLKVEGDSMTSPVGQSIPEGHMVLVDTGREPVNGSLVVAKLTDANEAT 167

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K L+   G+   L  LN  +P+  +  +  + I  ++
Sbjct: 168 FKKLVIDGGQKY-LKGLNPSWPMTPINGN-CKIIGVVV 203


>gi|227904197|ref|ZP_04022002.1| LexA repressor [Lactobacillus acidophilus ATCC 4796]
 gi|227868216|gb|EEJ75637.1| LexA repressor [Lactobacillus acidophilus ATCC 4796]
          Length = 208

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 29/221 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           +     +I   I    E     P+   +    GL  TS        +E +       +  
Sbjct: 6   SDTKQLEILRYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLSRLERKGFLIKDATKP 65

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + L  T E   +L             K KEIP++    +G             +      
Sbjct: 66  RALEITAEGKTELGI-----------KPKEIPVVGVVTAGKPI------LAVEDISEYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P          +   +    K    SM+      GD +I+      N G+ ++      
Sbjct: 109 LPPDLE------SDAGELFMLKVHGNSMIKAGILNGDNVIVRKQSTANNGEIVVAMTDEN 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K           L   N       ++   +  + +++
Sbjct: 163 EATVKRFFK-EDDHYRLQPENDTMAPIILQ--QVSILGKVV 200


>gi|304560689|gb|ADM43352.1| P22 repressor protein c2 [Edwardsiella tarda FL6-60]
          Length = 216

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 73/221 (33%), Gaps = 18/221 (8%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              + +   I +  +   L+   L++  G+   + ++ +R         P  +++  +  
Sbjct: 1   MKSETMGYRIHKRRKELKLSQVSLSKAVGVSNVAISQWERDET-----SPRGDALLNLAE 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           A   +   L++    D     +KE+      P++ +  +G         +P        G
Sbjct: 56  ALQCSAEYLVNGGDVDHNIEFRKERTQKGMYPVISWVSAGQWSEAIEA-YPIMAVDRWYG 114

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTG 178
             E     +    ++                  +G  ++++     + G  ++       
Sbjct: 115 TTEECHASSFWLDVKGDSMTSPVG-----LSIPEGMAILVDPEAAPDNGKLVVAKLVNDN 169

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K L+   GR   L  LN  YP+  +  +  + I  ++
Sbjct: 170 EATFKKLVIDSGRRF-LKPLNPQYPMIEINGN-CQIIGVVV 208


>gi|114327480|ref|YP_744637.1| LexA repressor [Granulibacter bethesdensis CGDNIH1]
 gi|122327547|sp|Q0BTY8|LEXA_GRABC RecName: Full=LexA repressor
 gi|114315654|gb|ABI61714.1| lexA repressor [Granulibacter bethesdensis CGDNIH1]
          Length = 242

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 19/237 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +    ++   ID    +   +PS    KA L+  S +   R       R        +
Sbjct: 1   MLTRKQYELLLLIDGHLRKTGFSPSFEEMKAALNLKSKSGIHRLISALEERGFLRRRHHR 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIP-----------------LLYFPPSGSGGF 103
             A     + +   +P      +       P                 +     + +   
Sbjct: 61  ARALEVIRMPEAASMPVPKTAPSAPSFASPPAFTPNVIQGSFSSRIAGVRAAQDASAVQL 120

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA 162
              G    G     +                 +    +    SM+      GD +I+  +
Sbjct: 121 PLYGRIAAGMPIEALRDTSAYLSVPIDMLGNGEHYALEVAGDSMIDAGIFDGDTVIIQQS 180

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G  ++      ++  K L  R G+S+ L   N  +         +    R++
Sbjct: 181 DLAENGQIVVALIDDTEVTLKRLRRR-GKSVALEPANERHETRIFPADRVRVQGRLI 236


>gi|307251335|ref|ZP_07533252.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306856641|gb|EFM88780.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 225

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 12/208 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +       NL    +A        S             R P+ + + K+L        
Sbjct: 7   EFVREKMVEKNLKQDDIAEALDRTQGSIGHWLTG-----RRTPNFDDVAKMLNVVGVDQV 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L           ++       L        G        T  +  TV + E+R+ +  +
Sbjct: 62  ILNSDGLITTLDNDE-------LEIIGKPKDGIIPVVGEATMGRDETVRLEELRTGYINL 114

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           Y+        + + +SM P  + G+ +++        GD +LI    G  + K L   R 
Sbjct: 115 YSADPDAYAVRGKGSSMEPRIKSGEYIVIEPNTPPMNGDDVLICTIAGQYMIKTLDWHRD 174

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                 S+N  +    +  +++  I  +
Sbjct: 175 GEYRFSSINNSHQPFNLPENEVVNIHTV 202


>gi|319892358|ref|YP_004149233.1| SOS-response repressor and protease LexA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162054|gb|ADV05597.1| SOS-response repressor and protease LexA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464540|gb|ADX76693.1| SOS regulatory protein LexA [Staphylococcus pseudintermedius ED99]
          Length = 207

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 60/227 (26%), Gaps = 34/227 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53
           M   +    +I+E I  + +     PS   +    GL   ++ +       E     R P
Sbjct: 1   MRELTKRQNEIFEFIKHVVQSKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +I+                       +   +    + P        + +    N
Sbjct: 61  TKPRAIEIVNEL------------------MGEPVNMEETIYVPVIGKVTAGTPISAIEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +PE  +  +       Q         SM       GD +I+ S      GD ++
Sbjct: 103 VEEYYPLPEHFTSTHN-----GQIFILNVMGDSMIEAGILDGDKVIVRSQSIAENGDIIV 157

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       +    +  + +++
Sbjct: 158 AMTEEDEATVKRFYKEKN-RYRLQPENSSLEPIYL--EQVTVLGKVI 201


>gi|312278268|gb|ADQ62925.1| Putative transcriptional regulator [Streptococcus thermophilus
           ND03]
          Length = 229

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 16/222 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68
            + +  + E   ++ + +A+  G+  +S+   +    +   +  S    +F +      +
Sbjct: 4   GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63

Query: 69  IC----------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                       +              +E+E      P      +        G  +   
Sbjct: 64  EHEIVEVYLELTEENRQEALRFTKALLEEQEAEKKKAPVIPLYTYKVFERLSAGTGYTY- 122

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +              D        SM P Y  G+++++        GD +      G
Sbjct: 123 -FGDGNYDEVFYDEEIDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDGD-VYAVDWDG 180

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +       + L+SLN  Y        +    I +I+
Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221


>gi|251795604|ref|YP_003010335.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247543230|gb|ACT00249.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 215

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 21/211 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I +  +  N +   LA K GL   +  + ++           TE +  + AA + T+
Sbjct: 15  GANIKKYRDLRNYSLQVLAEKVGLTKKTIQRYEQGE-----HRIDTERLKALAAALDVTV 69

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            QL +  +        + + + L              G    GN        E       
Sbjct: 70  LQLTEGAYEKLGIEVDESENVTLPVV-----------GKISCGNGQIAYEYIEGYESTPR 118

Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            +    +    + +  SM       GD+L++    +V  G+   +     + V K +  +
Sbjct: 119 SWINGGEYFYLRAKGDSMQGARIFDGDLLLIRKQEEVEDGEIAAVLI-GEEAVLKRVYRQ 177

Query: 189 RGRSIDLMSLNCCYPVDTVEMSD--IEWIAR 217
            G ++ L S N  YP       +  I  I +
Sbjct: 178 -GTTLVLQSENANYPPIICTAGENNIYVIGK 207


>gi|229018886|ref|ZP_04175731.1| LexA repressor [Bacillus cereus AH1273]
 gi|228742419|gb|EEL92574.1| LexA repressor [Bacillus cereus AH1273]
          Length = 223

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 62/226 (27%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 18  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +   +             K    +P+                    + 
Sbjct: 78  TK--PRAIEILGDNRMETETQSVIQVPIVGKVTAGLPI----------------TAVESV 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            +   +P          A   Q    +    SM+      GD++++        G+ ++ 
Sbjct: 120 EDHFPLPASIV------AGADQVFMLRISGDSMIDAGIFDGDLVVVRQQQSAYNGEIVVA 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216


>gi|33151354|ref|NP_872707.1| transcription regulator [Haemophilus ducreyi 35000HP]
 gi|33147574|gb|AAP95096.1| probable transcription regulator [Haemophilus ducreyi 35000HP]
          Length = 233

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 17/222 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    E+   + + LA   GL  ++    +        R P    I  I      +
Sbjct: 11  IGNRIRDEREKAGRSRNELADTLGLSLSTLQLWE-----TNEREPQASMIITIAEELGVS 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--NTVGVPEIRSP 126
              LL     +G       K  P            F++     G       V  P+ + P
Sbjct: 66  PSYLLTGETEEGEVKTPVAKTQPTQQIQDISMINSFETISVSAGFGSFNEGVTEPDGQVP 125

Query: 127 HNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           ++                      SM P    GD L+++   +    D + +      + 
Sbjct: 126 YDDELLRKLGVKPRHCAVFWASGNSMQPTIDNGDQLLVDLDRKDIKSDSVYLVQNGTSVW 185

Query: 182 AKVLISRRGRSIDLMSLNC-CYPVDTV---EMSDIEWIARIL 219
            K +   R  S++L+S N   Y    +   +  +++ I +++
Sbjct: 186 VKRV-KVRWNSVELISDNKEEYDPIILTTTDAENLQVIGQVV 226


>gi|52842770|ref|YP_096569.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629881|gb|AAU28622.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 225

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 10/222 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               +KI + I    +   LT   LA     + P+  N  +        R P  E I ++
Sbjct: 1   MSIREKIGKRIHEARKAKGLTRQALADLTDDIKPSRINNWEHGT-----RMPGPEEITQL 55

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             A   +   L+ L            +   L+        G     +     +     + 
Sbjct: 56  AQALEVSPSFLMGLSDERDGDFGINSRVGSLIPLLDHKQAGDPKYHIQRVKEEPYAEKIT 115

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDI 180
            +    +    +       K  D SM P  R  DI I++ +I  N GD  ++      D+
Sbjct: 116 FLPVNQDIANQLDEYAFALKMLDDSMSPELRINDIQIVDPSISPNPGDFVVVKISGKDDV 175

Query: 181 VAKVLISR--RGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +              +L++LN  +P  T  E   +E +  ++
Sbjct: 176 IICQYKKISYTSSEFELLTLNDNWPNITFNESEQVEIVGTVI 217


>gi|313122873|ref|YP_004033132.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279436|gb|ADQ60155.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 206

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 65/215 (30%), Gaps = 19/215 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           KI   I +  ++  LT   LA   GL   T+    ++         P  + I  I  A +
Sbjct: 2   KIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSN-----PPAKRIPAIADALD 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++ +LL              K   L+    +        G    G    +    E    
Sbjct: 57  ISVSELL---------GNDDAKPKNLVDLADAKVISIPILGTIACGKPIFSEENYEGHLN 107

Query: 127 HNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                     +      Q  SM P    GD +I+     V  G+   +     +   K +
Sbjct: 108 KVYFGDPPTGEVFALTCQGDSMAPYILDGDKVIVRKQETVENGEIAAVLIN-NEATLKTV 166

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
                +++ L+  N  Y    +      + + +++
Sbjct: 167 KYVGDKTL-LIPKNDAYDPLVLTPDNQNQVLGKVV 200


>gi|289434584|ref|YP_003464456.1| LexA SOS response regulator, transcription repressor [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170828|emb|CBH27370.1| LexA SOS response regulator, transcription repressor [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|313633434|gb|EFS00264.1| repressor LexA [Listeria seeligeri FSL N1-067]
 gi|313638120|gb|EFS03382.1| repressor LexA [Listeria seeligeri FSL S4-171]
          Length = 204

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            + I+E I    +     PS   +    GL  +S        +EG+    R P+     +
Sbjct: 7   QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E E P +   P          +    N      +
Sbjct: 67  IL--------------------SLEDEVETPNVVNIPIIGKVTAGMPITAIENIEEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +      A +T     +    SM+      GD +I+        G+ ++      +
Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +  + +++
Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPIILNN--VTILGKVI 197


>gi|260597511|ref|YP_003210082.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
 gi|260216688|emb|CBA30048.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
          Length = 233

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 79/236 (33%), Gaps = 24/236 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       I   + ++    N+  + LA    +D  + ++ +     G+ +  + +++ +
Sbjct: 1   MRM----NIGNRVRQLRLAKNMKIAELADAVEVDAANISRLE----TGKQKQFTEQTLNR 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW----N 116
           +  A   T+  L     +   T  K  K    +                  G  +    +
Sbjct: 53  LAHALGVTVADLFTSTDNAT-TVYKNSKPDSAIGEGTDVFRVEVLDASASAGMGYIQGSD 111

Query: 117 TVGVPEIRS-PHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            + V +     H    A+              +  SM P    GD++ ++ ++    GD 
Sbjct: 112 VIDVIQAIEYNHEKALAMFGGRSAGNVKVINVRGDSMSPTIEPGDLVFVDVSVNEFDGDG 171

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           +      G I AK L     + + ++S N  Y   +++ S         ++L  SQ
Sbjct: 172 IYTFGFDGKIYAKRLQMIPDQ-LLVISDNPKYREWSIDKSNEHRFYIYGKVL-ISQ 225


>gi|331678336|ref|ZP_08379011.1| repressor protein C2 [Escherichia coli H591]
 gi|331074796|gb|EGI46116.1| repressor protein C2 [Escherichia coli H591]
          Length = 210

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 66/218 (30%), Gaps = 24/218 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +     +  L  + LA++ G    S  + +    + R R+     + ++ +A   +
Sbjct: 3   ISSRVKSKRIQLGLNQAELAQRVGTTQQSIEQLENGKTK-RPRF-----LPELASALGVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSP 126
           +  LL+             +             G +     P    +             
Sbjct: 57  VDWLLNGTSDSNVRFVGHVEPKGKYPLISMVRAGSWCEACEPYDIKDIDEWYDSDVNLL- 115

Query: 127 HNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181
                         K +  SM         +G ++++++  +   G  ++       +  
Sbjct: 116 --------GDGFWLKVEGDSMTSPVGQSIPEGHMVLVDTGREPVNGSLVVAKLTDANEAT 167

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K L+   G+   L  LN  +P+  +  +  + I  ++
Sbjct: 168 FKKLVIDGGQKY-LKGLNPSWPMTPINGN-CKIIGVVV 203


>gi|227111558|ref|ZP_03825214.1| regulator of pectin lyase production [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 244

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 37/244 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +        L+   L    G+   +  K +            T  I ++  + +  
Sbjct: 5   LAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS------QTTKIVELSNSLHVR 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L +       +   +  + P +                        V   +      
Sbjct: 59  PEWLANGEGPMRSSEVTRSLQEPSIPPKSEWGTVSAWDSTTELSEDEVEVPFLKDIEFAC 118

Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163
           G   IQ++D                                 SM P+   G  + +++  
Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178

Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +     +L    + G         K L  + G  + + S N     +    SD+E I R+
Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLVIHSFNRE-TDEEAYESDVEIIGRV 237

Query: 219 LWAS 222
            W S
Sbjct: 238 FWYS 241


>gi|218781420|ref|YP_002432738.1| phage repressor [Desulfatibacillum alkenivorans AK-01]
 gi|218762804|gb|ACL05270.1| putative phage repressor [Desulfatibacillum alkenivorans AK-01]
          Length = 229

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 20/231 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   +++ E ID+       +    A K  +  +          +     P  +++ K
Sbjct: 1   MANTFPERMQEIIDQQK-----SARDFAIKCSISDSLIRAYLSGKSQ-----PGLDNLAK 50

Query: 61  ILAATNETICQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I       +  L+       R         +                      G+    +
Sbjct: 51  IADVAQVNVQWLVTGEGPMMRGEPLIPSNLDPQGGLDLDEFDYIPMTHAELSAGDGRVVL 110

Query: 119 G------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRL 171
                      R     +   +        +  SMLP  +  D +I++        G+  
Sbjct: 111 EEGFKNRFAFRRDWLRRVGLNKNHAVMMVVRGDSMLPTLQDHDTVIVDLNRTRIDTGNIY 170

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
            +      +  K L +R  + + ++S N  Y    +E  DI  I +++W S
Sbjct: 171 AVNMGDDLLSIKRLEARGPQ-VRVISDNKAYEPYDMENQDIRVIGQVVWFS 220


>gi|254361662|ref|ZP_04977799.1| possible LexA family transcriptional regulator/S24 family protease
           [Mannheimia haemolytica PHL213]
 gi|153093184|gb|EDN74195.1| possible LexA family transcriptional regulator/S24 family protease
           [Mannheimia haemolytica PHL213]
          Length = 239

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 22/213 (10%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             S  AR  G+   S ++  +   +     PS  ++ KI   +N ++  L     S  ++
Sbjct: 26  NYSEFARAVGVAQASLSRWVKGEAD-----PSRSNLVKIAEVSNVSLEWLATGKESKPQS 80

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPT-------GNKWNTVGVPEIRSPHNGIYAIQ- 134
                                     F T       G+    V  P+ + P+        
Sbjct: 81  ENTSIVAREFERLEKMADDIVSMINSFRTINVSAGFGSFNEGVTKPDGQEPYADSLLQSL 140

Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRR 189
                         TSM P     D ++++ +  +    D++ +      +  K +  + 
Sbjct: 141 GVKAHNCGVFWANGTSMHPTIADSDQMLVDFSKREPRGDDKIYLVQNGESVWVKRI-RKE 199

Query: 190 GRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
              I+L+S N  Y    +   +   ++ I +++
Sbjct: 200 WDYIELISDNESYRPIQITAEEAQNLQIIGQVV 232


>gi|160902695|ref|YP_001568276.1| LexA family transcriptional regulator [Petrotoga mobilis SJ95]
 gi|189046543|sp|A9BGA3|LEXA_PETMO RecName: Full=LexA repressor
 gi|160360339|gb|ABX31953.1| transcriptional repressor, LexA family [Petrotoga mobilis SJ95]
          Length = 205

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 56/222 (25%), Gaps = 26/222 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +    ++ + I    E++   PS                 +       R     + 
Sbjct: 1   MEELTKRQSQVLDFIKSYMEKNGFAPS------------IRDIMKHFNFKSPR-----AA 43

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K L    +             +   K  +        P          +       + +
Sbjct: 44  HKHLIILEKKGYIERKNVSRGIKMMPKSGEIFATETLAPVSGKIAAGDAIEAIQTISDYI 103

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P    P N  Y         + +  SM     + GD +++        GD ++     
Sbjct: 104 PIPTNFFPKNYEY------FSLRVEGNSMIEAQIKSGDFVLIRKQDYAMDGDIVVALIDG 157

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K         + L+  N       V+   ++   +++
Sbjct: 158 NDATLKRYKRLNEDEVLLIPENKSMKEIKVKADHLKIQGKMV 199


>gi|240014426|ref|ZP_04721339.1| Putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae DGI18]
 gi|240081451|ref|ZP_04725994.1| Putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae FA19]
 gi|240120855|ref|ZP_04733817.1| Putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae PID24-1]
          Length = 180

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 4/171 (2%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           PS  +   I       +  +              +  + + Y   S   G   +   P  
Sbjct: 10  PSEPTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 69

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           N +    +P  +S                    SM     +   + +++        ++ 
Sbjct: 70  NGY---RLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIY 126

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
              + G    K LI + G S+ + S N   YP +T  +  +  I R+ W S
Sbjct: 127 AFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWS 177


>gi|126650160|ref|ZP_01722393.1| LexA repressor [Bacillus sp. B14905]
 gi|126593332|gb|EAZ87294.1| LexA repressor [Bacillus sp. B14905]
          Length = 205

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 58/227 (25%), Gaps = 37/227 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           M   S   + I   I          PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MKKVSKRQEDILAFIKDEVRAKGYPPSVREIGEAVGLASSSTVHGHLARLEQKGFIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                      ++  +   +   P        S +    N
Sbjct: 61  TKPRAIEILEP--------------------EESIQKQHVIHVPLVGKVTAGSPITAIEN 100

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +P+             Q    +    SM       GD++I+        GD ++
Sbjct: 101 IEEYFPLPDTYGTSED------QLFMLEIMGESMIEAGILDGDLVIVKQKSTAINGDIVV 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       V    +  + +++
Sbjct: 155 AMTAEDEATVKRFFKEKN-HFRLQPENSSMEPIIV--DQVSILGQVV 198


>gi|332185800|ref|ZP_08387547.1| lexA repressor [Sphingomonas sp. S17]
 gi|332014158|gb|EGI56216.1| lexA repressor [Sphingomonas sp. S17]
          Length = 227

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 49/220 (22%), Gaps = 5/220 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I+   +   ++PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTAKQHELVCFINDRLKETGVSPSFEEMKEALDLKSKSGVHRLISALEERNFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L                       +      +  P +        G    G      
Sbjct: 61  ARALEVLRMPDRPEKPASAPAATAGNVRNPSARTVGEPANDVVEIPLHGRIAAGVPIEAF 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                            +    +    SM       GD  ++        G  ++     
Sbjct: 121 E-GSSMLAVPAALLGSGEHYALEVSGDSMVEAGILDGDYALIRRTDVARDGQIVVALIDE 179

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            +   K    R G  + L   N  Y       + +    +
Sbjct: 180 SEATLKYF-RREGSMVRLDPANRAYDPQRYAPAQVRVQGK 218


>gi|215484235|ref|YP_002326462.1| Repressor protein C2 [Acinetobacter baumannii AB307-0294]
 gi|213987961|gb|ACJ58260.1| Repressor protein C2 [Acinetobacter baumannii AB307-0294]
          Length = 230

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 13/203 (6%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            LAR  G+ P S +        G+++    E++ K           L     S     +K
Sbjct: 24  DLARAVGVKPPSVSDWL----SGKSKTMEGENLLKASKFLGVNPNWLASGNGSPHEMIKK 79

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEIRSPHNGIYAIQTQDTRHK 141
             +E                   +     W+ V      P   +  + +           
Sbjct: 80  TNEEDLSNILFRDLKLHKIPVLDYVQAGFWHEVAYDGSSPHSYTYTDYVSCSPESIFSVI 139

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-----SRRGRSIDLM 196
            Q  SM P +++GD+LI++++I    G  ++ +  + +   K               +L+
Sbjct: 140 VQGKSMEPDFKEGDMLIVDASINPKPGSYVIAQNGSHEATFKKYRVLAHDEYGRDVFELI 199

Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
            +N  +P  +    DI  I  ++
Sbjct: 200 PINSDFPTLSSVTHDIRIIGVVV 222


>gi|294101955|ref|YP_003553813.1| transcriptional regulator, XRE family [Aminobacterium colombiense
           DSM 12261]
 gi|293616935|gb|ADE57089.1| transcriptional regulator, XRE family [Aminobacterium colombiense
           DSM 12261]
          Length = 235

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 72/231 (31%), Gaps = 24/231 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  +  +  LT   LA K G+   +  + ++       R+P    +  +      ++
Sbjct: 4   GKRLSELRVKRGLTQLELAEKLGVSFHTILRWEK-----ERRFPDVFHLSILADVLETSV 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEIRSPH 127
             L+    +       ++ +   +   P     F     +  G+           +    
Sbjct: 59  AYLMGEKKNGSGKYYARDIDKEAVIAVPLLDSSFVACAGWGFGDMEGIEPDFCATLIVGK 118

Query: 128 NGIYAIQTQD-TRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKV 184
           + I  I  +     K +  SM       G  + +N    +  GD + +   R GD+  K 
Sbjct: 119 DDIGRIGGKCPYAIKVEGDSMQEAGIPDGARISVNPEEPIYNGDAVLVKWGRRGDLAVKW 178

Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSDIE------------WIARILWAS 222
                   ++L S N   YP   +   +IE               +++  S
Sbjct: 179 YYEY-NDRVELRSSNPAKYPPIIITKEEIEQEAEAGNIDFFRICGKVMVVS 228


>gi|308389172|gb|ADO31492.1| putative regulatory protein [Neisseria meningitidis alpha710]
          Length = 215

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 20/215 (9%)

Query: 17  AERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
              +NL+    LA  AG+      +       G  R P    +      TN +   L D 
Sbjct: 1   MSEYNLSTQQELADFAGVSKGLVGQWFNGQT-GLGRKP----LVAFEKKTNFSPRWLADG 55

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP--------H 127
                +     ++    +    +       +     G  +     PE  S          
Sbjct: 56  YGEKYKNQTVLDRLSDGIADGIAFE---LLNVQAAAGVGYFNDDFPEPLSRLVFSEHWVR 112

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +            +  SM P +  GD L +++A     G+ + +    G++  K L S
Sbjct: 113 EHLGGTGKAVKLISVKGDSMSPTFNHGDFLFVDTAADFYNGEGVYVFAAAGELRVKRLQS 172

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
                ++++S N  Y  + +   D   ++   R++
Sbjct: 173 SVRGGMNVISDNRNYNAEYLPPDDWAAVKVCGRVV 207


>gi|190151419|ref|YP_001974330.1| putative transcriptional repressor [Streptococcus phage PH15]
 gi|190014413|emb|CAQ57799.1| hypothetical protein [Streptococcus phage PH15]
          Length = 249

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 37/241 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I +    +  T   L  K G+   +    ++       R P  +++F +  A   +
Sbjct: 10  IGEKIKQYRLENGWTQQELGSKIGISKNAIGNYEKGI-----RSPKKDTMFDLANAFGIS 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--------------- 113
           I  L      D  T     +EI     PP  +     +                      
Sbjct: 65  IDDLFPQIRKDSYTKISTIQEIYNELKPPRQAKVLTYAKRQLNEQKNEEDTKKTEVSEDI 124

Query: 114 ----KWNTVGVPEIRSPHNGIYAIQTQ----------DTRHKTQDTSMLPLYRKGDILIL 159
                ++    P        +  ++ +          D     +  SM P Y  GD++ +
Sbjct: 125 IQLYSYDYYDHPASAGTGQYLNDVRVERIELPVNIDADFVIPIKGDSMEPDYHDGDLVFI 184

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218
            +++++N G   +      D   K L+  + ++  L SLN  Y    +    D   I  +
Sbjct: 185 QTSVELNDGVIGV-FNYNNDAYIKQLVIDKDQAY-LHSLNPAYKDMPITPETDFRIIGEV 242

Query: 219 L 219
           +
Sbjct: 243 V 243


>gi|256827170|ref|YP_003151129.1| SOS-response transcriptional repressor, LexA [Cryptobacterium
           curtum DSM 15641]
 gi|256583313|gb|ACU94447.1| SOS-response transcriptional repressor, LexA [Cryptobacterium
           curtum DSM 15641]
          Length = 212

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 49/225 (21%), Gaps = 26/225 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNL--TPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +   +++   I+   E      T   +  K GL  P++ +   R   E        
Sbjct: 1   MNDLTKRQQQVLSCIEEFIEEKGYGPTVREVCNKLGLRSPSTVHVHLRALEEKGLINR-- 58

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                           L                    +   P          +    N  
Sbjct: 59  -------DPLKSRSITLTGAAAESMGQPSALVDTPYNVVTLPLVGDVAAGEPILAEENIT 111

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + + +P                        SM       GD L++        G+ ++  
Sbjct: 112 DHISLPTEIVG-------DAASFLLSVHGESMIEAGINDGDYLVVKEQPTAVNGEIVVAL 164

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                   K         I L   N       V   D   + +++
Sbjct: 165 ID-DGATVKRFYR-EADHIRLQPENSSMEPIIVR--DCTIVGKVV 205


>gi|300811721|ref|ZP_07092195.1| repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497297|gb|EFK32345.1| repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 206

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 33/224 (14%)

Query: 3   SFSHK----KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
             +H     +I + I    E     P+   +    GL  TS        +E +       
Sbjct: 1   MATHDSKQLEILQYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLTRLERKGYLIKDA 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +  + L  T+  +                           P          +    +  +
Sbjct: 61  TKPRALEITHAGLD-----------------ALGIKPKDIPVIGVVTAGQPILAVQDVED 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +P   +      +   +    +   TSM+      GD +I+        G+ ++   
Sbjct: 104 YFPLPPNLA------SDAGELFMLRVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMT 157

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   K           L   N       +    ++ + +++
Sbjct: 158 DDGEATVKRFFK-EDFHYRLQPENDAMDPIILNH--VQILGKVV 198


>gi|315302947|ref|ZP_07873676.1| repressor LexA [Listeria ivanovii FSL F6-596]
 gi|313628688|gb|EFR97092.1| repressor LexA [Listeria ivanovii FSL F6-596]
          Length = 204

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            + I+E I    +     PS   +    GL  +S        +EG+    R P+     +
Sbjct: 7   QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E E P +   P          +    N      +
Sbjct: 67  IL--------------------SLEDEVETPNVVNIPIIGKVTAGMPITAIENIEEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +      A +T     +    SM+      GD +I+        G+ ++      +
Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +  + +++
Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPIILNN--VTILGKVI 197


>gi|134287468|ref|YP_001109635.1| putative phage repressor [Burkholderia vietnamiensis G4]
 gi|134131890|gb|ABO60584.1| putative phage repressor [Burkholderia vietnamiensis G4]
          Length = 235

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 60/224 (26%), Gaps = 18/224 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-- 64
             +   +        ++   LAR+ GL   + +  ++          S  S+ K L    
Sbjct: 6   DSVGARVSARRTELGISQKELARRVGLTQPTISALEKGKSNT---SGSIASLAKALGVVP 62

Query: 65  ------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                   +      +        T+    E  +      GS G    G     +    V
Sbjct: 63  LWLETGLGDKEPGAREYRRVLDDGTQTSVIEFEVTVLASDGSCGGGAPGQTVIADVRTKV 122

Query: 119 -GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKP 175
             V   +     I A              M      GD++  +SA   ++  G       
Sbjct: 123 GPVIRDQRFFERIGASPEHVFAILGDGDGMARFIEHGDMVFFSSAGCDRLVTGQI-YAFE 181

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIA 216
                  K +  R    + L + N     YP +    +D E + 
Sbjct: 182 TIDGPRIKRVHRRADGHVILSNDNPDKNRYPDEIYSQADAEALH 225


>gi|291525632|emb|CBK91219.1| Predicted transcriptional regulator [Eubacterium rectale DSM 17629]
          Length = 244

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           I E I    ++  L    LA +       +   + +  +R   E          + +IL 
Sbjct: 4   IGEIISSYRKKKGLLQQDLADELAKEGITISYKAISNWERNLAE--PSVTIFYKVCRILG 61

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108
            TN         P     +   + +E  + Y     + G +                   
Sbjct: 62  ITNMYEAYFGVNPADPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENA 121

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              G     V  P+     +     +      +    SM P +  G I  +     V  G
Sbjct: 122 VSAGTGNFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHDGQIAWVLQQESVANG 181

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  +     G+   K L + +   I L+SLN  Y    V E   ++   ++L
Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYAPIKVSENDRLDIFGKVL 231


>gi|149184889|ref|ZP_01863206.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. SD-21]
 gi|148831000|gb|EDL49434.1| prophage MuMc02, peptidase, family S24 [Erythrobacter sp. SD-21]
          Length = 211

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 17/218 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + E +DR+ ++  L  S ++R  G + +   +  +    G  R    +    + +   
Sbjct: 2   EHVREELDRLIQQRRLGYSSISRMIGRNSSYIQQFIKR---GSPRKLDDDDRRTLASFFG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNTVGVPEIRS 125
                   +             EIP+L    S   G         T   ++   +  +  
Sbjct: 59  VDEQ----VLGGPPAPMRDGLIEIPVLNVDASAGFGAIAESETAHTRFGFDERWLARLTR 114

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKV 184
             +   +I            SM P    GD ++++++ Q     D + +      +V K 
Sbjct: 115 AKSASLSI------IHVLGDSMEPTLSDGDEVLVDASDQGSRLRDGIYVLRADDALVVKR 168

Query: 185 LISRRGRS-IDLMSLNCCYPVD-TVEMSDIEWIARILW 220
           +  + G   I + S N  YP    V+ S+I+ + R++W
Sbjct: 169 VTLKPGGRKITISSDNSAYPSWDDVDRSEIQVVGRVIW 206


>gi|154484852|ref|ZP_02027300.1| hypothetical protein EUBVEN_02570 [Eubacterium ventriosum ATCC
           27560]
 gi|149733805|gb|EDM49924.1| hypothetical protein EUBVEN_02570 [Eubacterium ventriosum ATCC
           27560]
          Length = 244

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           I E I    ++  L    LA +       +   + +  +R   E          + +IL 
Sbjct: 4   IGEIISSYRKKKGLLQQDLADELAKEGITISYKAISNWERNLAE--PSVTIFYKVCRILG 61

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108
            TN         P     +   + +E  + Y     + G +                   
Sbjct: 62  VTNMYEAYFGVNPTDPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENA 121

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              G     V  P+     +     +      +    SM P +  G I  +     V  G
Sbjct: 122 VSAGTGNFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHNGQIAWVLQQESVANG 181

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  +     G+   K L + +   I L+SLN  Y    V E   ++   ++L
Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYAPIKVGENDRLDIFGKVL 231


>gi|307319507|ref|ZP_07598934.1| putative phage repressor [Sinorhizobium meliloti AK83]
 gi|306894879|gb|EFN25638.1| putative phage repressor [Sinorhizobium meliloti AK83]
          Length = 263

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 64/260 (24%), Gaps = 53/260 (20%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + I +  ++  +T   LA    +   S  + +     G    P  + I K+     
Sbjct: 2   ESIGQRIRQRRKQIGITQQQLADAFDIKRVSVTQWE-----GDITAPDRDKIAKLADLLG 56

Query: 67  ETICQ-----------------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
                                       ++     D                  +   G 
Sbjct: 57  CDPEWLLRGSGDPPRALDLGPGSRGSRAVVSSFDPDADEHSNDNAGAYTREHWRAHIKGA 116

Query: 104 FDSGVFPTGNKWNTV---------------------GVPEIRSPHNGIYAIQTQDTRHKT 142
                   G     V                              N + A  +     + 
Sbjct: 117 VPEIDVKLGAGEGAVGDVINLPVSASSVSGHQVVAEWFIPDAYLRNEVRASPSHTLIMEV 176

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRR---GRSIDLMSL 198
              SM P Y  GD ++++ +      D +        +   K L          + ++S 
Sbjct: 177 VGDSMFPTYSPGDRVLVDLSQDRLVTDTVYAISDGYSEPQIKRLQRVPFSEPTEVRIISD 236

Query: 199 NCCYPVDTVEMSDIEWIARI 218
           N      TVE+S ++ I RI
Sbjct: 237 NPNLETFTVELSRVKIIGRI 256


>gi|298695210|gb|ADI98432.1| phage repressor protein, putative [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 227

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 61/230 (26%), Gaps = 31/230 (13%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
                ++ S L+R+ G+   S +       E +        + K L      +       
Sbjct: 1   MSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLMGFDISK 58

Query: 77  FSDGRTTE--------KKEKEIPLLYFPPSGSGGFFDSGVFP------------------ 110
                  +           ++  +L +  +      +                       
Sbjct: 59  NRKIENNDITSIYSKLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSEVDIYGC 118

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                      E  S       +   D   K    SM PL++ G I+ +  +  +  G  
Sbjct: 119 ASAGIGERLYNEPISKEFVRGYVPAHDIALKVNGDSMEPLFKNGQIIFIEKSHTIKDGQI 178

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            +     GD   K +       + L+SLN  Y      +   +  + +++
Sbjct: 179 GVFIIN-GDAYVKKVY-VEDNRLTLVSLNKKYKDLYFYDNESVRLVGKVI 226


>gi|317491564|ref|ZP_07950000.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921111|gb|EFV42434.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 230

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 24/231 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            KI   I ++ +   +T   LA   G D  + ++ +R          S   + KI    +
Sbjct: 2   NKIGNKIRQIRKAKKMTILELANAVGSDVGNISRLERGIQGY-----SDAMLRKIADGLS 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---------WNT 117
             I +L      DG T +    +        +             G+            +
Sbjct: 57  VHISELFS-TEDDGGTVDSYSVKSLSESGRKNVYRVDVLDVSASAGDGANTGDVVEIIRS 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +      +        Q        +  SM      GD++ +++  +   GD + +    
Sbjct: 116 IEYVPEYAKTMFGNRPQGSVMLINVRGDSMTGTLEPGDLIFVDTLAKFFDGDGIYVFDFN 175

Query: 178 GDIVAKVLISRRGRSIDL--MSLNCCYPVDTVEMSD---IEWIARILWASQ 223
           GD   K L        +L  +S N  Y   +V   +   +    ++L  SQ
Sbjct: 176 GDTFVKRLQKV---KFELKVISDNKAYETWSVTPDEMDMLHIQGKVL-ISQ 222


>gi|308176889|ref|YP_003916295.1| LexA repressor [Arthrobacter arilaitensis Re117]
 gi|307744352|emb|CBT75324.1| LexA repressor [Arthrobacter arilaitensis Re117]
          Length = 239

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 62/225 (27%), Gaps = 15/225 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPST 55
           +   KKI E I R   ++   PS   +    GL   S      ++ ++ G     R P  
Sbjct: 16  TIRQKKILETIQRSIGKNGYPPSMREIGDAVGLKSLSSVTHQLSQLEKLGYI--RRDPRR 73

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
               +IL                       ++ +I  L      +      G    G   
Sbjct: 74  PRAMEILLPLQLAEDSEAAEASKPAEPVINEDAKIIELSTSADTTMVPL-VGRIAAGGPI 132

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
                 E             +    K    SM+      GD +++      + GD +   
Sbjct: 133 LAEQSVEDVFSLPRQLVGHGELFMLKVSGDSMVDAAICDGDWVVVRRQQTADNGDIVAAL 192

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K    +R     L+  N  Y     + +    + R++
Sbjct: 193 LD-EEATVKTF-RQRDGHTWLLPQNSRYEPILGDAA--TIMGRVV 233


>gi|215479925|ref|YP_002332313.1| c repressor [Pseudomonas phage MP38]
 gi|169409293|gb|ACA57697.1| c repressor [Pseudomonas phage MP38]
          Length = 219

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 21/224 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   I   A     +   LAR   +   +         E     P       I  A  
Sbjct: 3   EGLAARIRTCAALVG-SGDELARLTAIPRRTLEYYLTGDSE-----PKLARCVDIAKAAG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I  L             +  E     +                G+     G   +   
Sbjct: 57  VDIGWLATGEGEMHSAAPDEAAEDDTYAYV------PLYDARVSAGHGSWMEGARTLAKL 110

Query: 127 HNGIYAIQT------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
               Y+++         +  +    SM PL   GD ++++ +      + + +      +
Sbjct: 111 AFTRYSLRKQGLEIANMSAVRIGGDSMEPLLSDGDTVMIDHSCGEVRDEAIYVIRLDDHL 170

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWA 221
            AK +  +    + ++S N  Y    V   ++  I+ I R++WA
Sbjct: 171 YAKRIQRQINGGLAIISANSAYQTMYVSKQDLEAIDIIGRVVWA 214


>gi|253688262|ref|YP_003017452.1| putative phage repressor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754840|gb|ACT12916.1| putative phage repressor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 244

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 62/244 (25%), Gaps = 37/244 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +        L+   L    G+   +  K +            T  I ++  A +  
Sbjct: 5   LAERLKTARIAQGLSQKALGDLIGVSQAAIQKIEVGKAS------QTTKIVELSNALHVR 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L +           +  +   +                        V   +      
Sbjct: 59  PEWLANGEDPMRSDGVTRPVQESSIPPKSEWGTVSAWDSTTELSKDEVEVPFLKDIEFAC 118

Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163
           G   IQ++D                                 SM P+   G  + +++  
Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178

Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +     +L    + G         K L  + G  + + S N     +    S++E I R+
Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLVIHSFNRE-ADEEAYESEVEIIGRV 237

Query: 219 LWAS 222
            W S
Sbjct: 238 FWYS 241


>gi|256425817|ref|YP_003126470.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256040725|gb|ACU64269.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
           2588]
          Length = 250

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 13/208 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  + ++   T    A K G+  +     +    E     P TE +  +      +I 
Sbjct: 6   RNLKFLRKQKGWTQQEFADKLGIKRSLLGAYEEERAE-----PRTEVLELVSDMFRISID 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIRSPHN 128
            LL       + +  +++    +          F       G    +N     E  +   
Sbjct: 61  DLLRRDVGSQKESFLEKRRQQKMG--SDRQVIEFVPVKAAAGYLAGYNDDEFIEELNTFT 118

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI--LNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                       +    SMLP      I+   ++   ++   +  ++      IV K ++
Sbjct: 119 LPMMGAGNYRAFEIAGDSMLPTPSGSVIVCHKVDGWDEIRNNEAYIVVTNREGIVYKRIL 178

Query: 187 S--RRGRSIDLMSLNCCYPVDTVEMSDI 212
              R    I L+S N  Y    V M D+
Sbjct: 179 KTNRSKSKITLVSDNPQYEPYAVGMEDV 206


>gi|206725168|dbj|BAG71784.1| repressor of rdgA and rdgB [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 244

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 37/244 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +        L+   L    G+   +  K +            T  I ++  A +  
Sbjct: 5   LAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS------QTTKIVELSNALHVR 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L +       +   +  + P +                        V   +      
Sbjct: 59  PEWLANGEDPMRSSEVARSLQEPSIPPKSEWGTVSAWDSTTELSEDEVEVPFLKDIEFAC 118

Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163
           G   IQ++D                                 SM P+   G  + +++  
Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178

Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +     +L    + G         K L  + G  + + S N     +    S++E I R+
Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLVIHSFNRE-TDEEAYESEVEIIGRV 237

Query: 219 LWAS 222
            W S
Sbjct: 238 FWYS 241


>gi|312869029|ref|ZP_07729206.1| repressor LexA [Lactobacillus oris PB013-T2-3]
 gi|311095455|gb|EFQ53722.1| repressor LexA [Lactobacillus oris PB013-T2-3]
          Length = 207

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 36/227 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWP 53
           M    +K+  +   I +    H   P+   +    GL  T + +      IEG    + P
Sbjct: 1   MKPVKNKQLAVLNYIHKAVTEHGYPPTVREICSAVGLSSTSTVHGHINRLIEGGFLQKDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           S     +I                             PL    P          +    +
Sbjct: 61  SKPRALEI------------------TPKGFDLLGVKPLQTKIPLLGVVTAGQPILAVED 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +   +P     +N +Y           + TSM+      GD +I+        GD ++
Sbjct: 103 ATDYFPIPPSIQDNNDLY-------MLTIRGTSMIKAGILNGDQVIVRKQSTAKNGDIVI 155

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       ++   +  + R++
Sbjct: 156 AMNEDNEATCKRFFKEKD-RFRLQPENDTMDPIYLKN--VRILGRVV 199


>gi|330466449|ref|YP_004404192.1| LexA family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328809420|gb|AEB43592.1| LexA family transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 260

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 29/219 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            ++I + I    ERH   PS   +    G + P+S   + K    +G  R          
Sbjct: 60  QRRILDFIRTWVERHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLRR--------- 110

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +    + +D+        E    + P   + P          +    +  +   +P
Sbjct: 111 ----DPNRPRAVDVRSPGDIDDELSRSQRPTPAYVPMLGRIAAGGPILAEQSMEDVFPLP 166

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       + +    + +  SML      GD +++      + G+ +      G+ 
Sbjct: 167 RELVG-------EGEVFMLQVKGDSMLDAAICDGDWVVVRQQPTADSGEIVAAMLD-GEA 218

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    R    + LM  N  +        D   + R++
Sbjct: 219 TVKTYRRR-DGHVWLMPQNPAFDPI--PGDDATIMGRVV 254


>gi|317485979|ref|ZP_07944834.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
 gi|316922752|gb|EFV43983.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
          Length = 235

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 30/234 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  +      T +  A + G++  +    ++         P  E +  + +  N +
Sbjct: 4   IADRLVFLRGSA--TQAEFADRVGINVNTLRGYEKGRA-----LPGYEVLESLCSKLNVS 56

Query: 69  ICQ------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                                   R   + E   P+                   G+   
Sbjct: 57  PNWILTGQGNVLQEAPFSGLNETPRPLPQPELAEPMPSCDVDLIMIPMVEARLSAGHGSL 116

Query: 117 TV--GVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            V        +  +     +         +    SM P     DI++++   +     RL
Sbjct: 117 EVGGDSERSYAFRSDFLHRKGNPREMVLMRVSGDSMEPEIMDNDIVLIDQGKRDVTPGRL 176

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILW 220
                   I  K +       + L S N  YP   ++           I R+LW
Sbjct: 177 YAIGFDEAIYLKRIDILP-GKVILKSTNAAYPPVELDTRGDCEDAFRVIGRVLW 229


>gi|301300079|ref|ZP_07206297.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852311|gb|EFK79977.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 242

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 75/241 (31%), Gaps = 29/241 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I   I +  +   L+   +A K G+  ++  + ++  IE        E + ++L  T 
Sbjct: 2   NNIGYRIKQRRKELKLSADVVAEKLGVSRSTVFRYEKGDIEKVPTTI-LEKLAEVLKTTP 60

Query: 67  ETICQLLDLPFSDGRTTEKKE------------------------KEIPLLYFPPSGSGG 102
             +        S       +                         +E   +Y        
Sbjct: 61  AYLIGWESENNSAYTKMLHESFDSLNSYRKRKVIDFSKLQLSEQNREKSKIYSINENDIV 120

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
           ++   +             E              D   +    SM+PL+  G I+ +N  
Sbjct: 121 YYVEVLGAVSAGTGEWLTDEQHEEVMVNNEPPEHDFALRVNGDSMIPLFSDGQIIYVNRV 180

Query: 163 IQVN--CGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTV-EMSDIEWIARI 218
             +N    ++++I    GD   K ++    R    L+SLN  Y   +V E  + + +  +
Sbjct: 181 DDLNMVRNEQIVIAELNGDAFVKKIVFDNNRKDCQLISLNKEYKPISVTENDEFKVVGLV 240

Query: 219 L 219
           +
Sbjct: 241 V 241


>gi|229174359|ref|ZP_04301892.1| LexA repressor [Bacillus cereus MM3]
 gi|228609216|gb|EEK66505.1| LexA repressor [Bacillus cereus MM3]
          Length = 223

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 18  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +                 K    +P+                    + 
Sbjct: 78  TK--PRAIEILGDNRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 120 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216


>gi|227892620|ref|ZP_04010425.1| LexA repressor [Lactobacillus ultunensis DSM 16047]
 gi|227865605|gb|EEJ73026.1| LexA repressor [Lactobacillus ultunensis DSM 16047]
          Length = 210

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 53/228 (23%), Gaps = 35/228 (15%)

Query: 1   MTS------FSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M            +I   I    +     P+   +    GL  TS        +E +   
Sbjct: 1   MKMPKKNSETKQLEILRYIYDTVDHRGFPPTVREICSAVGLSSTSTVHGHLARLERKGLL 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
               +  + L  T E                  KEK        P          +    
Sbjct: 61  IKDATKPRALEITAEG-----------------KEKLGIKPKEIPVVGVVTAGQPILAVE 103

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171
           +      +P              +    K    SM+      GD +I+      N G+ +
Sbjct: 104 DIDEYFPLPPDLENDA------GELFMLKVHGESMINAGILNGDNVIVRKQTSANNGEIV 157

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K           L   N       +    +  + +++
Sbjct: 158 VAMTEENEATVKRFYK-ENGHYRLQPENDTMDPIILPK--VSILGKVV 202


>gi|319783655|ref|YP_004143131.1| LexA repressor [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169543|gb|ADV13081.1| LexA repressor [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 246

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 59/242 (24%), Gaps = 25/242 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--------- 51
           M +    ++   I    +   + PS    K  LD  S +   R       R         
Sbjct: 1   MLTRKQHELLMFIHERLKESGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 52  -------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
                         P   +  K   +  +             +    +           S
Sbjct: 61  ARALEVLRLPDSIAPGLNAAKKFSPSVIQGSLGQGGALGRQIKPAPSRMPSPGNDDDAVS 120

Query: 99  GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDIL 157
                   G    G   + +              +       + +  SM       GD +
Sbjct: 121 AVSIPVM-GRIAAGVPIDAIQHQTHSISVPPDMIMGGAHYALEVKGDSMIEAGIFDGDTV 179

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           I+ +A   + G+ ++      +   K    +   SI L + N  Y         ++   +
Sbjct: 180 IIRNADTASPGEIIVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGK 238

Query: 218 IL 219
           ++
Sbjct: 239 LV 240


>gi|295096361|emb|CBK85451.1| Predicted transcriptional regulator [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 233

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 56/222 (25%), Gaps = 20/222 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +    +    T + LA+  G+  +S  K       G  +        ++         
Sbjct: 8   ARLVEAMKEAGFTQASLAKAVGMSQSSIWKLTSGAASGSRKT------VQLSQVLGVRPE 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----------WNTVGV 120
            L             + +E                      G               +  
Sbjct: 62  WLSSGEGPKYVVGLTEAEESISHEPARDTYRVDVLDVQASAGPGTFVSSEFIETIRAIEY 121

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            E ++                    SM      GD + +++++    GD + +      I
Sbjct: 122 TEEQARLMFGNRPAHAIKVITVNGDSMEGTIDPGDFVFVDTSVNHFEGDGIYVFIFGKTI 181

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
             K L   +   + L S N  Y    +E SD      + ++L
Sbjct: 182 HIKRLQMLKTSLMVL-SDNKLYNSWEIEESDEGQFYVLGKVL 222


>gi|257063792|ref|YP_003143464.1| SOS regulatory protein LexA [Slackia heliotrinireducens DSM 20476]
 gi|256791445|gb|ACV22115.1| SOS regulatory protein LexA [Slackia heliotrinireducens DSM 20476]
          Length = 230

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 64/226 (28%), Gaps = 18/226 (7%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIEGR--NRWPS 54
           T  + K+  + + I    E   + P+   +    GL  P++ +       E    +R P 
Sbjct: 9   TKLTKKQTAVLDCIIATIEETGIAPTVRDICDSIGLSSPSTVHVHLNNLEEKGYIHRDPL 68

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                 +L  ++                    + E   +   P          +    N 
Sbjct: 69  KSRCITVLRTSDGETYGGTAPKGQPAHNDFVGQGEFSNVVNLPVVGNVAAGVPILAEQNI 128

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
             T+ +P             +     K +  SM+ +    GD +++      N GD ++ 
Sbjct: 129 QETIPLPTEIVG-------DSSSFLLKVRGDSMIEIGINDGDFVVVKEQPNANNGDIVVA 181

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                    K     R   I L   N       V   ++    +++
Sbjct: 182 L-VEDGATVKRFFKERD-HIRLQPENSTMEPIIV-RENVSIAGKVV 224


>gi|2498836|sp|Q47587|RDGA_PECCC RecName: Full=HTH-type transcriptional regulator rdgA
 gi|476017|gb|AAA24865.1| pectin lyase regulation DNA-binding protein [Pectobacterium
           carotovorum]
 gi|1094252|prf||2105355A rdgA gene
          Length = 244

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 62/244 (25%), Gaps = 37/244 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +        L+   L    G+   +  K +            T  I ++       
Sbjct: 5   LAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS------QTTKIVELSNNLRVR 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L +       +   +  + P +                        V   +      
Sbjct: 59  PEWLANGEGPMRSSEVTRSLQEPSIPPKSEWGTVSAWDSTTELSEDEVEVPFLKDIEFAC 118

Query: 129 GIYAIQTQDT-------------------------RHKTQDTSMLPLYRKGDILILNSAI 163
           G   IQ++D                                 SM P+   G  + +++  
Sbjct: 119 GDGRIQSEDYNGFKLRFSKATLRKVGANTDGSGVLCFPAAGDSMEPIIPDGTTVAVDTNN 178

Query: 164 QVNCGDRLLIKPRTGDI-----VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +     +L    + G         K L  + G  + + S N     +    SD+E I R+
Sbjct: 179 KRIIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLTIHSFNRE-TDEEAYESDVEIIGRV 237

Query: 219 LWAS 222
            W S
Sbjct: 238 FWYS 241


>gi|313667642|ref|YP_004047926.1| hypothetical protein NLA_2950 [Neisseria lactamica ST-640]
 gi|313005104|emb|CBN86536.1| hypothetical protein NLA_2950 [Neisseria lactamica 020-06]
          Length = 221

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 23/222 (10%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I  +  +  LT +  A       +  N           + P  + + KIL+  +     
Sbjct: 8   NIRELLAKEELTIAEFADLIDEKVSRVNDVLSG-----KQRPPFDMVEKILSKFDVDANW 62

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPEIRSPHNG 129
           L+            K     L       +           G+      V VP        
Sbjct: 63  LIS------GKKNSKRNISSLTALSDDYAYIPMFDVEVSAGHGSTAYGVTVPANHLAFRK 116

Query: 130 IYAI-----QTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAK 183
            + +     +        +  SM P     D L+++++      G+  +I+  +  +  K
Sbjct: 117 DWLLHRGLHEQDLNIVTAKGDSMEPTISSKDTLLVDTSKTNPRDGNIYVIRS-SDVLWVK 175

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222
            +  +   S+ L+S N  YP   + ++   DI+ I +++  S
Sbjct: 176 RIQRQIDGSLLLISDNSTYPPMPLTLAEHPDIQIIGQVVQVS 217


>gi|193077634|gb|ABO12464.2| EsvI [Acinetobacter baumannii ATCC 17978]
          Length = 229

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 26/229 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M++   +++  AI             + LAR AG+   +         +         ++
Sbjct: 1   MSTL-QERMSLAIKHYESETGKRFKNTDLARFAGVSRANVGLWVNGPTQ----ELEGSNL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG----FFDSGVFPTGNK 114
            K       +   L         T         +    P  S      F +         
Sbjct: 56  VKAAEFLGVSKDWLAGQSNKMDATKIDNNVSKKVAKLAPVLSWVQAGTFTNVQSVDLSMV 115

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRL 171
              + +P+  +               K Q  S  P + +GD ++++       +  GD +
Sbjct: 116 EEWLPLPDECT----------NCFYLKVQGVSNQPDFLEGDYILVDPDVYYSDMQSGDMV 165

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
           +++ R  D   K L+     S  L +LN  +  + + + +   ++ +++
Sbjct: 166 VVR-RFEDATFKKLVIETDGSRYLQALNPKFEPNIIPLDEHCYFVGQVV 213


>gi|94988428|ref|YP_596529.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
 gi|94541936|gb|ABF31985.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
          Length = 251

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 62/244 (25%), Gaps = 37/244 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  +I  + +   +T   LA+  G    + +  +    +            K L    + 
Sbjct: 4   LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQ--LDEVDIRKYAKALKIEPQQ 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---------NTVG 119
           +      P +          +               +   +               + V 
Sbjct: 62  LFDYSSSPTNPQVELIPSTLQKITSTSSQLEHKRQLNVLDYAETQLEQQNTVESNKDIVE 121

Query: 120 VPEIRSPHNGIY-----------------------AIQTQDTRHKTQDTSMLPLYRKGDI 156
            P+        Y                            D        SM P Y  GD 
Sbjct: 122 EPQATYYTYNYYDHAASAGTGQYLNDVQVETIELPVDYDADFVIPVHGDSMEPKYHSGDY 181

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWI 215
           + +  ++++  GD  +     GD   K L+     +  L SLN  Y    V+   D   I
Sbjct: 182 VFVKLSVELADGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNSKYEDIPVDRDSDFRII 239

Query: 216 ARIL 219
             ++
Sbjct: 240 GEVV 243


>gi|298291806|ref|YP_003693745.1| LexA transcriptional regulator [Starkeya novella DSM 506]
 gi|296928317|gb|ADH89126.1| transcriptional repressor, LexA family [Starkeya novella DSM 506]
          Length = 232

 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 59/228 (25%), Gaps = 11/228 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-----KRFGIEGRNRW 52
           M +    ++   I+   ++  + PS   +     L   +  ++      +R  I      
Sbjct: 1   MLTRKQHELLLFINERLQKDGVPPSFEEMKEALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + ++                +       + +                  G    G
Sbjct: 61  ARALEVIRLPEDAQPPKPAARPFAPNVIEGNLGRVRPSEDSEDVRRSVPIPVM-GRIAAG 119

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171
              + +   +             +    + +  SM       GD+ ++      N G+ +
Sbjct: 120 TPISAIQSRDHTISMPPEMLAGGEHFALEVRGDSMVEAGILDGDLALIRKTDSANTGEIV 179

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K L  +   S+ L + N  Y         +    +++
Sbjct: 180 VALIDDEEATLKRLRRKGA-SVALEAANPAYETRIFGPDRVRIQGKLV 226


>gi|229036523|ref|ZP_04189397.1| LexA repressor [Bacillus cereus AH1271]
 gi|228727800|gb|EEL78902.1| LexA repressor [Bacillus cereus AH1271]
          Length = 223

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 18  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +                     E   +   P          +    + 
Sbjct: 78  TK--PRAIEILGDDRMD----------------AETQSVIQVPIIGKVTAGLPITAVESV 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 120 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216


>gi|259503106|ref|ZP_05746008.1| transcriptional repressor LexA [Lactobacillus antri DSM 16041]
 gi|259168972|gb|EEW53467.1| transcriptional repressor LexA [Lactobacillus antri DSM 16041]
          Length = 222

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 63/227 (27%), Gaps = 36/227 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWP 53
           M    +K+  +   I +    H   P+   +    GL  T + +      IEG    + P
Sbjct: 16  MKPVKNKQLAVLNYIHKAVNEHGYPPTVREICSAVGLSSTSTVHGHINRLIEGGFLQKDP 75

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           S     +I                             PL    P          +    +
Sbjct: 76  SKPRALEI------------------TPKGFDLLGIKPLQTKIPLLGVVTAGQPILAVED 117

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +   +P     HN +Y           + TSM+      GD +I+        GD ++
Sbjct: 118 ATDYFPIPPSIQDHNDLY-------MLTIRGTSMIKAGILNGDQVIVRKQSTAKNGDIVI 170

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       ++   ++ + R++
Sbjct: 171 AMNEDNEATCKRFFKEKD-RFRLQPENDTMDPIYLKN--VKILGRVV 214


>gi|207857403|ref|YP_002244054.1| phage encoded transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709206|emb|CAR33539.1| phage encoded transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 231

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++    N+  + LA   G+D  + ++ +     G+ +  + +++ ++    + 
Sbjct: 2   NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLE----TGKQKQFTEQTLSRLADCLSV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117
            I +L       G T  K                          GN              
Sbjct: 58  DIAELFT-SDPKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHA 116

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +   + ++          +      +  SM P    GD++ ++ +I    GD + +    
Sbjct: 117 IEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFD 176

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
             I  K L       + ++S N  Y   ++            ++L  SQ
Sbjct: 177 DKIYVKRLQMIPD-KLLVISDNTNYREWSITKDNECRFGVFGKVL-ISQ 223


>gi|258404327|ref|YP_003197069.1| putative phage repressor [Desulfohalobium retbaense DSM 5692]
 gi|257796554|gb|ACV67491.1| putative phage repressor [Desulfohalobium retbaense DSM 5692]
          Length = 211

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 14  DRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
            R+ E   +T  S LA    ++ ++  ++KR G   + RW     ++++          L
Sbjct: 10  KRLQEALGITTQSELANLLQVNRSAVTQAKRTGEVPQ-RW-----VWQLSRHLGLNRTWL 63

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                      +       +     +G G F                         G   
Sbjct: 64  ETGQGPMRPGPDTFATIPKVKARLSAGGGSFETEQ-----AVEGYYSFRRDWLRGKG--- 115

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                        SM P  ++GD ++++   Q      +        ++ K +       
Sbjct: 116 QPGCMVLMDIMGDSMEPELKEGDTVLVDQNQQEIYAGGMYAMGVEDTVMVKRVEKHPN-K 174

Query: 193 IDLMSLNCCYPVDTVEMSDIEW---IARILWA 221
           + L+S N  Y    ++  +IE    I RILW 
Sbjct: 175 LVLLSTNQRYTPIVLQGDEIEAVTCIGRILWV 206


>gi|330992626|ref|ZP_08316572.1| phage transcriptional regulator and peptidase [Gluconacetobacter
           sp. SXCC-1]
 gi|329760308|gb|EGG76806.1| phage transcriptional regulator and peptidase [Gluconacetobacter
           sp. SXCC-1]
          Length = 287

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 32/242 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  + ER   T  GLAR  G+    F+    +  + +  +   + + +++    +   
Sbjct: 45  HRLKALRERGGYTVRGLARDLGMGER-FSSYAFYENKLKKDFIPVDLVRRLVPLLTDRGD 103

Query: 71  QLLDLPFSD-----------------------GRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             +                                 +         Y     +GG     
Sbjct: 104 PPIAASEVWALCGIVPGATDLNESISRAERASMPVHDDDGAITVHEYDISPQAGGGAIVD 163

Query: 108 VFPTGNKWNTVGVPEIRSPHNGI---YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
               G+      +   R P N I             +    SM P +  GD +++++  +
Sbjct: 164 HTACGDGEGHPTLESWRIPRNFIRNYLPDTAGLAIIRVTGNSMEPEFLAGDRVLVDTGHR 223

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGR---SIDLMSLNCCYPVDTVEMSDIEWIARIL-- 219
           +   D + +      +V K L+         I ++S+N  YPVD V+ SD+    R++  
Sbjct: 224 IPSPDGVYVLWNGMGVVIKQLMLVPNSRPPRIRIISVNPTYPVDEVDASDLVINGRVVGK 283

Query: 220 WA 221
           W 
Sbjct: 284 WV 285


>gi|317506472|ref|ZP_07964273.1| LexA repressor [Segniliparus rugosus ATCC BAA-974]
 gi|316255233|gb|EFV14502.1| LexA repressor [Segniliparus rugosus ATCC BAA-974]
          Length = 279

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 61/219 (27%), Gaps = 21/219 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            ++I E I          PS   +   AGL  TS   ++ +    +G  R     +  + 
Sbjct: 67  QQEILEIIRSSIRERGFPPSIREIGEAAGLASTSSVAHQLRSLQQKGYLR--REANRPRA 124

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +   + +       P S+ +  +     + +             + V    +  +   +P
Sbjct: 125 VDTRSISAPSGELTPESEEQPEQPTPTAVLVPLV----GRIAAGAPVLAEEHVEDLFPLP 180

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                                   SM+      GD +++           ++      + 
Sbjct: 181 RELVGTEAA-------FLLSVAGDSMVDAGIHDGDWVVIRQTKTPVYDGEIVAAMFEDEA 233

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L    GR + L   N  Y          + + +++
Sbjct: 234 TVKTLRRH-GREVWLYPENKAYQP--FRGEKAKILGKVI 269


>gi|288573116|ref|ZP_06391473.1| transcriptional regulator, XRE family [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568857|gb|EFC90414.1| transcriptional regulator, XRE family [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 234

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 81/227 (35%), Gaps = 23/227 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + R+ +   LT + LAR +G+   + ++ +   I       S E+   + +    ++
Sbjct: 4   GERLRRVRKDQGLTQTELARLSGVKQNTVSQVENDRI-----GLSIETWESLASVLGCSV 58

Query: 70  CQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTG---------NKWNTVG 119
             L+        +  +    ++    +                G         +  +++ 
Sbjct: 59  GYLVSGEGDRKSSGHRGSAGKLSFFQWIDVPILDDTAVACAGNGIGGMAEVYADAEDSIM 118

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD-RLLIKPRT 177
           +P        + A   +      +  SM       G  +++N   +V  GD  L+   R 
Sbjct: 119 LPGELLGTVSVNA-DRRPFIITVEGDSMEEAGILDGSQVVVNPEEEVYDGDPALVSFGRN 177

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219
           GD   K +  +R  ++++ S +  YP  +  + DI+      I +++
Sbjct: 178 GDWAVKWVYWQRNGAVEIRSSSLRYPPRSFSVEDIDEGLFQIIGKVV 224


>gi|226362566|ref|YP_002780344.1| LexA repressor [Rhodococcus opacus B4]
 gi|226241051|dbj|BAH51399.1| LexA repressor [Rhodococcus opacus B4]
          Length = 220

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 29/218 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++I   I   A  H  +PS   +    GL   +S +K  +   E               
Sbjct: 22  QQRILATIRDWAATHGCSPSTRQIGDAVGLRSTSSVSKHLKSLEEK-------------- 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                       L      +  K+ +        P        + +    +    + +P 
Sbjct: 68  GFLQRGSAMARQLDVRPFLSETKQGRSSDNNVTVPVVGDIAAGAPILAEEHADEMLTLPR 127

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                             + +  SM+      GD++++    + + G+ +      G+  
Sbjct: 128 ELVGS-------GTVFGLRVRGESMIDAAICDGDVVVVRRQDEAHSGEIVAAMID-GEAT 179

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            KVL  R    + L   N  Y    ++  D   + +++
Sbjct: 180 VKVLRRR-DGHVFLEPRNPAYT--VIDADDAVILGKVV 214


>gi|311107226|ref|YP_003980079.1| repressor protein C2 domain-containing protein [Achromobacter
           xylosoxidans A8]
 gi|310761915|gb|ADP17364.1| repressor protein C2 domain protein [Achromobacter xylosoxidans A8]
          Length = 234

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 14/223 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +    +    T + LAR  G+ P +  + +     G     +  S  + L      +
Sbjct: 5   GDRLKFAIKLRGTTAAALARHLGVAPQAIYQVQSGKS-GAMNASNAASAAEFLRVPIRWL 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                   S          +     F  +       S   P  N      + EI    +G
Sbjct: 64  TDGEGSTPSLLPKDTPAPVQPGPSDFDANVVPAPIGSRRVPLINYVQAGELTEIGVSFSG 123

Query: 130 I--------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                      +       + Q  SM P +R GD +I++  +    GD ++ +    +  
Sbjct: 124 EAMEYLLTDLRLSDYSFALEIQGDSMSPEFRPGDRIIVDREVCPRPGDFVVARNGGYEAT 183

Query: 182 AKVLISR-----RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K    R          +L+ LN  YP    E   +  I  ++
Sbjct: 184 FKKYRPRGISETGHEVFELVPLNEDYPTLYSERQPLIVIGTMV 226


>gi|307245346|ref|ZP_07527434.1| Possible LexA family repressor/S24 family protease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254300|ref|ZP_07536139.1| Possible LexA family repressor/S24 family protease [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258759|ref|ZP_07540491.1| Possible LexA family repressor/S24 family protease [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853687|gb|EFM85904.1| Possible LexA family repressor/S24 family protease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862728|gb|EFM94683.1| Possible LexA family repressor/S24 family protease [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867110|gb|EFM98966.1| Possible LexA family repressor/S24 family protease [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 224

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 30/231 (12%)

Query: 3   SFSHKKIW----EAIDRMAERHNLTP----SGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
             + +KI     + +D   ++  L      + LA    + P + +K             +
Sbjct: 1   MLTDEKIRVDFAKRLDIACKQKGLPEKGRGTQLASVCKVTPKAVSKWLNAETM--PSTAN 58

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
              + K LA T     + L     +         ++PL+ +  +G+    D      G+ 
Sbjct: 59  IYLLAKFLAVTP----EWLTYGIGNVIPAAIGTTKVPLISYVQAGAWTGIDDFRETCGD- 113

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           +  +              +       K +  SM P +  GDI+I++  ++ + G+ +   
Sbjct: 114 YEYI---------LTDLDVSGDAFALKIEGDSMEPEFIAGDIVIIDPKVEPHAGEFVAAI 164

Query: 175 PRTGDIVAKVLISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K             +  +L+ LN  +   +    +I  I  ++
Sbjct: 165 NGDYEATFKKYRPLEDLDEYGRQHFELVPLNPDWHSMSSLKQEIRIIGTMV 215


>gi|238027673|ref|YP_002911904.1| putative phage repressor [Burkholderia glumae BGR1]
 gi|237876867|gb|ACR29200.1| Putative phage repressor [Burkholderia glumae BGR1]
          Length = 241

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 66/240 (27%), Gaps = 26/240 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-- 65
            I   I      H LT   +    G+  ++    +R     R        + +IL  +  
Sbjct: 2   DIGSRIREKRLAHGLTLQQVGDMFGISRSAVASWERGAT--RPDQDKLPRLARILKTSIA 59

Query: 66  ------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                         D P  D   TE     +                     G+      
Sbjct: 60  FLLSGERRHDIGGSDSPTDDDEVTEDNGYTLDAPPLRSDIVQISRFDTGGAMGSGIELRD 119

Query: 120 VPEIRS----------PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
            P I             +   Y+             SM P++  GD LI++  I++   D
Sbjct: 120 QPGIIETLRVSHEWINKNLKNYSSVENLCVVTGFGDSMRPMFNPGDPLIIDVGIKLVEYD 179

Query: 170 RLLIKPRTGDIVAKVLISRR-GRSIDL--MSLNCCYPVDTVEMS-DIEWIARI--LWASQ 223
            +      G+   K L        + L   S N  Y    +    + E + R+  +W S+
Sbjct: 180 AIYFFRVDGEGFIKRLQRIPTEGGLVLRARSENASYETWDITPRMNFEVLGRVLKVWRSE 239


>gi|229075580|ref|ZP_04208567.1| LexA repressor [Bacillus cereus Rock4-18]
 gi|229098128|ref|ZP_04229076.1| LexA repressor [Bacillus cereus Rock3-29]
 gi|229104224|ref|ZP_04234896.1| LexA repressor [Bacillus cereus Rock3-28]
 gi|229117146|ref|ZP_04246525.1| LexA repressor [Bacillus cereus Rock1-3]
 gi|228666314|gb|EEL21777.1| LexA repressor [Bacillus cereus Rock1-3]
 gi|228679241|gb|EEL33446.1| LexA repressor [Bacillus cereus Rock3-28]
 gi|228685319|gb|EEL39249.1| LexA repressor [Bacillus cereus Rock3-29]
 gi|228707559|gb|EEL59745.1| LexA repressor [Bacillus cereus Rock4-18]
          Length = 223

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 18  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +                 K    +P+                    + 
Sbjct: 78  TK--PRAIEILGDDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P      +       Q    +    SM       GD++++        G+ ++ 
Sbjct: 120 EEHFPLPASIVSGSD------QVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216


>gi|83589968|ref|YP_429977.1| SOS-response transcriptional repressor, LexA [Moorella
           thermoacetica ATCC 39073]
 gi|123739298|sp|Q2RJF5|LEXA_MOOTA RecName: Full=LexA repressor
 gi|83572882|gb|ABC19434.1| SOS-response transcriptional repressor, LexA [Moorella
           thermoacetica ATCC 39073]
          Length = 205

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 52/217 (23%), Gaps = 36/217 (16%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFKILA 63
           +   I    + +   PS   + +  GL   ++         E     R PS     +IL 
Sbjct: 12  VLNYIRHFIDINGYPPSIRDICKATGLRSSSTVYNYLNKLEEKGYIRRDPSRSRAIEIL- 70

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                             T          +   P          +    N  +   +P  
Sbjct: 71  ------------------TPYPALTRAKNMVSVPLLGKITAGQPILAFENIEDVFPLPAD 112

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                   A             SM       GD LI+        GD ++      +   
Sbjct: 113 L-------AGAENAFMLHVSGDSMIEAGILDGDYLIVRPQDTAENGDIVVAL-LEDEATV 164

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K         I+L+  N       V    +  + +++
Sbjct: 165 KYFYRYPD-HIELVPANSSMQPLIVHK--VTILGKVV 198


>gi|167032741|ref|YP_001667972.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859229|gb|ABY97636.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 222

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 16/221 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I    +   LT   LA +   D  + ++ +R       +  S E + KI +    
Sbjct: 2   DIGQRIREARKARGLTLEALANQVDTDTGNLSRLERG-----KQGASQELLTKIFSVLQL 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--GGFFDSGVFPTGN--KWNTVGVPEI 123
            +  +  +           + +  +           G+        G+  +      P  
Sbjct: 57  GVADVDHIRPKSAHPGLAYDWDNLVPACAEDNRVRKGYPLISWVIAGDWARSADHHHPAD 116

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDR-LLIKPRTG 178
               +   +        + +  SM     P + +G ++++     +  G   ++    +G
Sbjct: 117 AEWLSSTESAGANGFWLRVRGDSMTCAGNPSFPEGSLILVRPEADIVSGKYYVVQMLDSG 176

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++  K  +   G    L  LN  Y    ++ +   +I R++
Sbjct: 177 EMTFKQYVEDAGIKY-LRPLNPGYRTIEIDGN-CRFIGRVI 215


>gi|15830439|ref|NP_309212.1| cI repressor protein [Escherichia coli O157:H7 str. Sakai]
 gi|7649844|dbj|BAA94122.1| CI protein [Enterobacteria phage VT2-Sakai]
 gi|13360645|dbj|BAB34608.1| putative cI repressor protein [Escherichia coli O157:H7 str. Sakai]
          Length = 217

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 54/212 (25%), Gaps = 18/212 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS   I  +            
Sbjct: 8   RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFN 62

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                                +P             P    +       + S        
Sbjct: 63  HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA--- 117

Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                  + +  SM       P +  G +++++    V  GD  + +    +   K LI 
Sbjct: 118 SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIR 177

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   L  LN  YP+          + +++
Sbjct: 178 DSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI 207


>gi|210610461|ref|ZP_03288418.1| hypothetical protein CLONEX_00608 [Clostridium nexile DSM 1787]
 gi|210152454|gb|EEA83460.1| hypothetical protein CLONEX_00608 [Clostridium nexile DSM 1787]
          Length = 244

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           I E I    ++  L    LA +       +   + +  +R   E          + +IL 
Sbjct: 4   IGEIISTYRKKKGLLQQDLADELAKEGITISYKAISNWERNLAE--PSVTIFYKVCRILG 61

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108
            TN         P     +   + +E  + Y     + G +                   
Sbjct: 62  ITNMYEAYFGVNPADPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENA 121

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              G     V  P+     +     +      +    SM P +  G I  +     V  G
Sbjct: 122 VSAGTGNFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHDGQIAWILQQESVANG 181

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  +     G+   K L + +   I L+SLN  Y    V E   ++   ++L
Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYAPIRVSENDRLDIFGKVL 231


>gi|116618304|ref|YP_818675.1| XRE family transcriptional regulator [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|122271496|sp|Q03WX0|LEXA_LEUMM RecName: Full=LexA repressor
 gi|116097151|gb|ABJ62302.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 212

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 54/220 (24%), Gaps = 28/220 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              ++   I      +   P+   +    GL  +S      +R   +G         + K
Sbjct: 8   KQIQVLRFIHEAQSENGYPPTVREIGEAVGLSSSSTIHGHIERLVKKGY--------LLK 59

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             +       ++ D+       +    K   L               +           +
Sbjct: 60  DASKPRARAIEVTDIGLEMLGISTTPGKIPVLGMVTAGT------PILAVEEEATEFFPI 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+                       SM+ +    GD +I+      + GD ++      +
Sbjct: 114 PDNLMQF------DGDLFMLNVHGDSMVNIGILDGDKVIVRKQENADNGDVVVAMNDNNE 167

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       ++   +  + +++
Sbjct: 168 ATVKRFFR-EADHYRLQPENNSMAPIILQK--VSILGKVI 204


>gi|229162541|ref|ZP_04290502.1| LexA repressor [Bacillus cereus R309803]
 gi|228621020|gb|EEK77885.1| LexA repressor [Bacillus cereus R309803]
          Length = 215

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 61/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 10  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 69

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +                     E   +   P          +    + 
Sbjct: 70  TK--PRAIEILGDDRMD----------------AETQSVIQVPIIGKVTAGLPITAVESV 111

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            +   +P          A   Q    +    SM+      GD++++        G+ ++ 
Sbjct: 112 EDHFPLPASIV------AGADQVFMLRISGDSMIDAGIFDGDLVVVRQQQSAYNGEIVVA 165

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 166 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 208


>gi|41179362|ref|NP_958701.1| repressor protein cI [Bordetella phage BPP-1]
 gi|45569525|ref|NP_996594.1| repressor protein cI [Bordetella phage BMP-1]
 gi|45580776|ref|NP_996642.1| repressor protein cI [Bordetella phage BIP-1]
 gi|14278854|gb|AAK40284.1| repressor protein cI [Bordetella phage BPP-1]
          Length = 223

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 28/235 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+ +       I+ +        + +A K G+   + ++ ++   +     PS E++ K
Sbjct: 1   MTTLAQ-----NINYLFRVRGENATSIAEKVGISQPTLHRIQKGINQ----RPSGETLRK 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKE-----IPLLYFPPSGSGGFFDSGVFPTGNKW 115
           +      T+  LL    S G   E   +        +    P  +           G   
Sbjct: 52  LADYFGVTVDDLLTRDLSTGLPAEAIARANVREGPNIRGLVPLLTSVQAGEWCEIAG--- 108

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDR 170
            T    + +           +      +  SM      P Y  GD++ ++  +    GDR
Sbjct: 109 -TFQRDDAKVWLPCPVKHGPRTFCLTVEGESMKNPGARPSYEPGDVIFVDPDVAAKPGDR 167

Query: 171 LLIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL--WA 221
           ++ +  +      K  +   GR + L +LN  +    + ++ D      ++  W 
Sbjct: 168 VVARLESQVAATFKQYLEEDGRKL-LKALNPDWQPRYIPINGDATICGVVIGKWV 221


>gi|329850633|ref|ZP_08265478.1| lexA repressor [Asticcacaulis biprosthecum C19]
 gi|328840948|gb|EGF90519.1| lexA repressor [Asticcacaulis biprosthecum C19]
          Length = 233

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 59/228 (25%), Gaps = 11/228 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M +   +++   I    +   ++PS         LA K+G+        +R  I      
Sbjct: 1   MLTTKQRELLMFIHERIKEGGVSPSFDEMKEALDLASKSGIHRLITALEERGFIRRLAHR 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                + K+      +        F        +             +      G    G
Sbjct: 61  ARALEVIKLPDQATTSAPPRGRQAFVPQVVEGTRPAAEA-PRAVNDDTRELPLLGKIAAG 119

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171
                +G    R           +    +    SM+      GD +++        G+ +
Sbjct: 120 VPIEAMGQERDRLRVPESMLGAGEHYILEIDGDSMINAGILNGDFVVIKKTDTAQSGEII 179

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +          K L  +   SI L + N  Y         +    +++
Sbjct: 180 VALVDDETATLKRLRKKGA-SIALEAANPAYKTQIYNDGQVRIQGKLV 226


>gi|227431629|ref|ZP_03913665.1| LexA repressor [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352621|gb|EEJ42811.1| LexA repressor [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 212

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 59/220 (26%), Gaps = 28/220 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              ++   I      +   P+   +    GL  +S      +R   +G     +++   +
Sbjct: 8   KQIQVLRFIHEAQSENGYPPTVREIGEAVGLSSSSTIHGHIERLVKKGYLLKDASKPRAR 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +  T             +         +IP+L    +G+                   +
Sbjct: 68  AIEVT---------DIGLEMLGISTTPGKIPVLGIVTAGTPILAVE-----EEATEFFPI 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+                       SM+ +    GD +I+      + GD ++    + +
Sbjct: 114 PDNLMQF------DGDLFMLNVHGDSMVNIGILDGDKVIVRKQENADNGDVVVAMNDSNE 167

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       ++   +  + +++
Sbjct: 168 ATVKRFFR-EADHYRLQPENNSMAPIILQK--VSILGKVI 204


>gi|307294055|ref|ZP_07573899.1| putative phage repressor [Sphingobium chlorophenolicum L-1]
 gi|306880206|gb|EFN11423.1| putative phage repressor [Sphingobium chlorophenolicum L-1]
          Length = 223

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 16/215 (7%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++R+      + S L+R    +P    +  +    G  R    E    +          L
Sbjct: 12  LERLIAERGDSYSDLSRLLNRNPAYIQQFIKR---GTPRKLDEEDRRILARYFGVAEDML 68

Query: 73  LDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                      +         +P L    S   G  D     TG     +        H 
Sbjct: 69  GGSTVRGTAPVKGRSLPSVITVPRLSLGASAGPGSLDEDERATGA----MAFDANWLRHL 124

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLIS 187
           G+     + +  +    SM P    GD ++++         D + +    G ++ K +  
Sbjct: 125 GV--RPQKISIIRVDGESMAPTLSDGDEIMVDHDDDATRLRDGVYVLRLDGVLMVKRVAL 182

Query: 188 RRGRS-IDLMSLNCCYPV-DTVEMSDIEWIARILW 220
              R    ++S N  YP    ++ + +  + R++W
Sbjct: 183 GPRRGLFSVLSDNPHYPDWIDIDPALVVIVGRVVW 217


>gi|71280789|ref|YP_267128.1| putative transcriptional regulator [Colwellia psychrerythraea 34H]
 gi|71146529|gb|AAZ27002.1| putative transcriptional regulator [Colwellia psychrerythraea 34H]
          Length = 210

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 32/206 (15%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S L+   G+ PT+    +     GRN+ P++      L+  N++  +             
Sbjct: 28  SELSEALGVSPTTIRTWR-----GRNKIPASAFRKAELSIQNDSDVKTDTRISLSFYEIS 82

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
                  L+      +   F+                     +  I              
Sbjct: 83  ASAGGGALVEVEEQANLISFEPEWL-----------------NKEIGVNANDVFLMLVDG 125

Query: 145 TSMLPLYRKGDILILNSAIQVNCG--DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
            SM P  + G ++++N       G  D + +     +++ K L       I + S N  Y
Sbjct: 126 DSMYPTLKNGAMIMVNKH---FNGLSDGIYVMRHEQNLLVKRLQMLPNGIIKVKSDNNLY 182

Query: 203 PVDTVEMS-----DIEWIARILWASQ 223
               +        DIE I R++W+ Q
Sbjct: 183 EPWEINKENLDGTDIEIIGRVVWSGQ 208


>gi|330994780|ref|ZP_08318702.1| LexA repressor [Gluconacetobacter sp. SXCC-1]
 gi|329758041|gb|EGG74563.1| LexA repressor [Gluconacetobacter sp. SXCC-1]
          Length = 224

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 56/219 (25%), Gaps = 7/219 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   ID    R   +PS    K  L   S +   R       R         
Sbjct: 1   MLTKKQHELLLFIDGHLRRTGFSPSFDEMKDALGLRSKSGIHRLISALEERGFLHRRHHR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L        ++   P        + E        P          G    GN    +
Sbjct: 61  ARALEILRLPDIEIPPPPPVKAPGPSRPEGADAAFLVPVV---EVPFVGRVAAGNPIEAI 117

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                R         +      +    SM       GD++I+    Q   G  ++     
Sbjct: 118 TTDTTRIAVPADMLGKASHYALEVMGDSMQDAGILDGDMVIIREGTQATDGQIVVALVDG 177

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            ++  K +    G  I L+  N  Y    +  S +    
Sbjct: 178 DEVTLKRI-RHEGGEIALIPANTRYETRLLPASRVSVQG 215


>gi|315282148|ref|ZP_07870618.1| repressor LexA [Listeria marthii FSL S4-120]
 gi|313614213|gb|EFR87887.1| repressor LexA [Listeria marthii FSL S4-120]
          Length = 204

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            + I+E I    +     PS   +    GL  +S        +EG+    R P+     +
Sbjct: 7   QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E E P +   P          +    N      +
Sbjct: 67  IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAVENIDEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +      A +T     +    SM+      GD +I+        G+ ++      +
Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +  + +++
Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPILLNN--VTILGKVI 197


>gi|153971519|ref|YP_001393059.1| DNA-binding protein RDGA [Vibrio vulnificus]
 gi|153971715|ref|YP_001393216.1| DNA-binding protein RDGA [Vibrio vulnificus]
 gi|152955041|emb|CAL25393.1| DNA-binding protein RDGA [Vibrio vulnificus]
 gi|152955200|emb|CAL25550.1| DNA-binding protein RDGA [Vibrio vulnificus]
          Length = 208

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 75/215 (34%), Gaps = 19/215 (8%)

Query: 9   IWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I ++ E   +++   L    G+  ++ N+ +         +PS + + ++      
Sbjct: 3   LGGRIKKLREESLHISKKELGAILGVSQSAVNQWENGVN-----YPSQKRLIELSRVLKT 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   L++   S        E EIP        +GG F        +   ++ V     P 
Sbjct: 58  TYEWLVNGTTSSHNDG--SEYEIPFYEHVNCSAGGGF------INDSEESILVSNHFIPL 109

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
            G  ++       +    SM P      I+ ++++ +     ++ +  +   +  K L  
Sbjct: 110 LGEMSLDK-VIAIRVHGDSMEPAISDRGIVFVDTSDKKIIDGKVYVYQQEDVLRVKRLEY 168

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
                + + S N  Y  + +   + +    I R+L
Sbjct: 169 SVNG-LMIKSYNDKYSDEKISKREFDSFCIIGRVL 202


>gi|169830890|ref|YP_001716872.1| putative prophage repressor [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637734|gb|ACA59240.1| putative prophage repressor [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 245

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 57/215 (26%), Gaps = 35/215 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I R  ER  ++   LA  A LD +  +K +          PS E++ +I  +   
Sbjct: 2   DIGPRIARFRERAGMSQKKLAELAALDRSHISKIESGDT-----SPSLEALMRICESMGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T+ +                K    +       G                          
Sbjct: 57  TLAEFFGSDVQPVPVVAGVVKARIPIRTEDYYEGFLELDKKCRA---------------- 100

Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKV 184
                    D   +    SM+     +GD  +   +   + G  ++            K 
Sbjct: 101 ---------DFAVQVSGDSMVWAGINEGDFALCRRSEVAHNGQMVVAAIENNDWGGTIKY 151

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   G+   L S N  Y    +  +    +  ++
Sbjct: 152 YV-NNGKHYLLRSANPEYKDRIMPSNA-RIVGTVV 184


>gi|152991709|ref|YP_001357430.1| phage repressor protein [Sulfurovum sp. NBC37-1]
 gi|151423570|dbj|BAF71073.1| phage repressor protein [Sulfurovum sp. NBC37-1]
          Length = 217

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 14/221 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             +  +I E +  +     +        +A+   +   +F   K+             ++
Sbjct: 1   MMNFNEIIEKLKDVISETKIGGKVFDKDVAQALNIPQATFATMKKRNSIPYEEILEFCAL 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            KI    N            +      + +    +     G    FD         + T+
Sbjct: 61  KKIS--VNWLFFDQAVDMLKEQTEKFFQVRYFSDIRASAGGGAEVFDEN-------YETI 111

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            + E    HN +    T+         SM P  + G I+ ++        D + I   T 
Sbjct: 112 TIDEKIM-HNMVGMGNTELEAIHVDGESMEPTLQDGSIVFVDRNQTNINKDGIFIASTTA 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +  K +  R    ++L+S N  Y  + +   ++  + +++
Sbjct: 171 GLFIKRIRQRADGMVELISDNKAYSPEVLAPDEVSIVGKVV 211


>gi|300918422|ref|ZP_07135020.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
 gi|300414397|gb|EFJ97707.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
          Length = 229

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 13/213 (6%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            + I E + R     + T +  A   G+ P   ++          R    +   KI  A 
Sbjct: 12  EQLIVEFLKR---DRHTTKAAFAELCGISPAQLSQLLGGNSH---RNIGDKMARKIEQAL 65

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                                      L +  S   G               + + EI +
Sbjct: 66  -------DRPFGWLDSPHNAPGSIKSELEYVGSVRPGAVPVVGEAILGIDGMIDMLEIHA 118

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               IY+        K +  SM P  + G+ +++    QV+ GD + ++ + G  + K++
Sbjct: 119 GWLQIYSADRDAYGLKVKGDSMWPRIQSGEYVVIEPNTQVHTGDEVFVRTKDGHNMIKIM 178

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              R       S+N  +   T+    IE +  +
Sbjct: 179 SKTRDGDYQFSSVNSDHRPITLSPDSIEKMHFV 211


>gi|23099124|ref|NP_692590.1| LexA repressor [Oceanobacillus iheyensis HTE831]
 gi|29427760|sp|Q8EQM5|LEXA_OCEIH RecName: Full=LexA repressor
 gi|22777352|dbj|BAC13625.1| transcriptional repressor of SOS regulon [Oceanobacillus iheyensis
           HTE831]
          Length = 207

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           MT  S   + I++ I    +     PS   +A   GL   ++ +   +R   +G   R P
Sbjct: 1   MTKLSKRQQMIFDFIKSEVKLKGYPPSVREIAVAVGLASSSTVHGHLERLENKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +I+                + +  + + +  P++    +G             N
Sbjct: 61  TKPRAIEIID------------LEMEQQLPKDEARYAPVIGKVTAGIPIT------AVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
               V +P   +  +                 SM       GD++I+        G+ ++
Sbjct: 103 IEEFVPIPSSSAGPDD------NVFVLVIDGESMIEAGILDGDMVIVKQQNTAVNGEIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         I L   N        +   +  + +++
Sbjct: 157 AMTEENEATVKRFFKEEN-RIRLQPENATMEPLFYDN--VTILGKVI 200


>gi|220929115|ref|YP_002506024.1| SOS-response transcriptional repressor, LexA [Clostridium
           cellulolyticum H10]
 gi|254809092|sp|B8I2Q1|LEXA_CLOCE RecName: Full=LexA repressor
 gi|219999443|gb|ACL76044.1| SOS-response transcriptional repressor, LexA [Clostridium
           cellulolyticum H10]
          Length = 215

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 25/221 (11%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59
             ++I + + +    +   PS   +    G   TS   +  ++   +G   + P+     
Sbjct: 8   KQQEILDYVYKCVHENGYPPSVREICSAVGFKSTSTVHSYLQKLIDKGHLQKDPTKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           KIL  T++      +                      P          +    N  +T  
Sbjct: 68  KILNKTSQVQENRTNKEGYYTSREMVD---------VPVVGRVTAGQPILAVENITDTFP 118

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         +   +     + Q  SM+       D +++      N GD ++      
Sbjct: 119 LPVD-------FVQNSDAFMLRIQGESMIDAGILDKDFVLVRQQSSANNGDIVVALI-GD 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K     +   I L   N       V   ++  + +++
Sbjct: 171 EATCKTFYREKD-HIRLQPQNSSMEPIVV-KDELSILGKVI 209


>gi|15927573|ref|NP_375106.1| hypothetical protein SA1805 [Staphylococcus aureus subsp. aureus
           N315]
 gi|29028622|ref|NP_803311.1| cI-like repressor [Staphylococcus phage phi 12]
 gi|30043985|ref|NP_835522.1| similar to repressor [Staphylococcus phage phiN315]
 gi|49484242|ref|YP_041466.1| repressor [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87160268|ref|YP_494620.1| phi77 ORF011-like protein, phage transcriptional repressor
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195287|ref|YP_500091.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|118725059|ref|YP_908795.1| putative repressor [Staphylococcus phage phiNM3]
 gi|151222133|ref|YP_001332955.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161510223|ref|YP_001575882.1| transcription regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253315033|ref|ZP_04838246.1| phi77 ORF011-like protein, phage transcriptional repressor
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253729783|ref|ZP_04863948.1| bifunctional S24 family peptidase/transcriptional regulator
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|258413673|ref|ZP_05681947.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258425108|ref|ZP_05687978.1| transcription regulator [Staphylococcus aureus A9635]
 gi|258434317|ref|ZP_05688718.1| transcription regulator [Staphylococcus aureus A9299]
 gi|258447839|ref|ZP_05695974.1| transcription regulator [Staphylococcus aureus A6224]
 gi|258452360|ref|ZP_05700370.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|282917348|ref|ZP_06325103.1| repressor [Staphylococcus aureus subsp. aureus D139]
 gi|282928797|ref|ZP_06336390.1| repressor [Staphylococcus aureus A10102]
 gi|283771163|ref|ZP_06344054.1| transcription regulator [Staphylococcus aureus subsp. aureus H19]
 gi|294849551|ref|ZP_06790293.1| repressor [Staphylococcus aureus A9754]
 gi|295428581|ref|ZP_06821208.1| repressor [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589944|ref|ZP_06948584.1| bifunctional S24 family peptidase/transcriptional regulator
           [Staphylococcus aureus subsp. aureus MN8]
 gi|13701792|dbj|BAB43085.1| SA1805 [Staphylococcus aureus subsp. aureus N315]
 gi|18920546|gb|AAL82286.1| cI-like repressor [Staphylococcus phage phi 12]
 gi|49242371|emb|CAG41083.1| putative repressor [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87126242|gb|ABD20756.1| phi77 ORF011-like protein, phage transcriptional repressor
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202845|gb|ABD30655.1| Helix-turn-helix domain protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|104641824|gb|ABF73166.1| putative repressor [Staphylococcus phage phiNM3]
 gi|150374933|dbj|BAF68193.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160369032|gb|ABX30003.1| possible bifunctional S24 family peptidase/transcriptional
           regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726518|gb|EES95247.1| bifunctional S24 family peptidase/transcriptional regulator
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257839626|gb|EEV64096.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257844691|gb|EEV68735.1| transcription regulator [Staphylococcus aureus A9635]
 gi|257849265|gb|EEV73246.1| transcription regulator [Staphylococcus aureus A9299]
 gi|257858936|gb|EEV81804.1| transcription regulator [Staphylococcus aureus A6224]
 gi|257859947|gb|EEV82785.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|269941472|emb|CBI49869.1| putative phage repressor protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282318975|gb|EFB49330.1| repressor [Staphylococcus aureus subsp. aureus D139]
 gi|282589532|gb|EFB94620.1| repressor [Staphylococcus aureus A10102]
 gi|283459757|gb|EFC06848.1| transcription regulator [Staphylococcus aureus subsp. aureus H19]
 gi|285817683|gb|ADC38170.1| CI-like repressor, phage associated [Staphylococcus phage phiN315]
 gi|294823688|gb|EFG40115.1| repressor [Staphylococcus aureus A9754]
 gi|295127563|gb|EFG57202.1| repressor [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577072|gb|EFH95786.1| bifunctional S24 family peptidase/transcriptional regulator
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312830369|emb|CBX35211.1| helix-turn-helix family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315196785|gb|EFU27130.1| possible bifunctional S24 family peptidase/transcriptional
           regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320143662|gb|EFW35440.1| peptidase S24-like domain protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329724424|gb|EGG60934.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus
           21189]
          Length = 237

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 64/243 (26%), Gaps = 31/243 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    +  I + I +     N++   LA    + P++ +             PS   I +
Sbjct: 1   MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSN-----PSHGVIQR 55

Query: 61  ILA----------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           I             T +    +  +        ++              S G     +  
Sbjct: 56  IADVFEVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINS 115

Query: 111 -------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                                   E          I T D   K    SM P+++ G+I+
Sbjct: 116 YKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKVNGDSMEPMFKDGEII 175

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIA 216
            +     +  G   +      +   K +       + L+SLN  Y          +  I 
Sbjct: 176 FVEKTHNIKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKDYDDLHFYRNESVRLIG 233

Query: 217 RIL 219
           +++
Sbjct: 234 KVI 236


>gi|46907529|ref|YP_013918.1| LexA repressor [Listeria monocytogenes serotype 4b str. F2365]
 gi|47094161|ref|ZP_00231880.1| LexA repressor [Listeria monocytogenes str. 4b H7858]
 gi|47096927|ref|ZP_00234504.1| LexA repressor [Listeria monocytogenes str. 1/2a F6854]
 gi|217964551|ref|YP_002350229.1| LexA repressor [Listeria monocytogenes HCC23]
 gi|224500626|ref|ZP_03668975.1| LexA repressor [Listeria monocytogenes Finland 1988]
 gi|226223904|ref|YP_002758011.1| SOS response regulator lexA [Listeria monocytogenes Clip81459]
 gi|254824638|ref|ZP_05229639.1| LexA repressor [Listeria monocytogenes FSL J1-194]
 gi|254828663|ref|ZP_05233350.1| LexA repressor [Listeria monocytogenes FSL N3-165]
 gi|254829941|ref|ZP_05234596.1| LexA repressor [Listeria monocytogenes 10403S]
 gi|254852646|ref|ZP_05241994.1| LexA repressor [Listeria monocytogenes FSL R2-503]
 gi|254898533|ref|ZP_05258457.1| LexA repressor [Listeria monocytogenes J0161]
 gi|254911976|ref|ZP_05261988.1| LexA repressor [Listeria monocytogenes J2818]
 gi|254932382|ref|ZP_05265741.1| LexA repressor [Listeria monocytogenes HPB2262]
 gi|254936303|ref|ZP_05268000.1| LexA repressor [Listeria monocytogenes F6900]
 gi|255026564|ref|ZP_05298550.1| LexA repressor [Listeria monocytogenes FSL J2-003]
 gi|255521013|ref|ZP_05388250.1| LexA repressor [Listeria monocytogenes FSL J1-175]
 gi|284801687|ref|YP_003413552.1| LexA repressor [Listeria monocytogenes 08-5578]
 gi|284994829|ref|YP_003416597.1| LexA repressor [Listeria monocytogenes 08-5923]
 gi|290893585|ref|ZP_06556568.1| LexA repressor [Listeria monocytogenes FSL J2-071]
 gi|300765457|ref|ZP_07075439.1| LexA repressor [Listeria monocytogenes FSL N1-017]
 gi|71658814|sp|Q720B9|LEXA_LISMF RecName: Full=LexA repressor
 gi|254809100|sp|B8DG25|LEXA_LISMH RecName: Full=LexA repressor
 gi|259494477|sp|C1L2K9|LEXA_LISMC RecName: Full=LexA repressor
 gi|46880797|gb|AAT04095.1| LexA repressor [Listeria monocytogenes serotype 4b str. F2365]
 gi|47014687|gb|EAL05643.1| LexA repressor [Listeria monocytogenes str. 1/2a F6854]
 gi|47017466|gb|EAL08280.1| LexA repressor [Listeria monocytogenes str. 4b H7858]
 gi|217333821|gb|ACK39615.1| LexA repressor [Listeria monocytogenes HCC23]
 gi|225876366|emb|CAS05075.1| Putative SOS response regulator lexA [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258601066|gb|EEW14391.1| LexA repressor [Listeria monocytogenes FSL N3-165]
 gi|258605962|gb|EEW18570.1| LexA repressor [Listeria monocytogenes FSL R2-503]
 gi|258608893|gb|EEW21501.1| LexA repressor [Listeria monocytogenes F6900]
 gi|284057249|gb|ADB68190.1| LexA repressor [Listeria monocytogenes 08-5578]
 gi|284060296|gb|ADB71235.1| LexA repressor [Listeria monocytogenes 08-5923]
 gi|290556930|gb|EFD90461.1| LexA repressor [Listeria monocytogenes FSL J2-071]
 gi|293583938|gb|EFF95970.1| LexA repressor [Listeria monocytogenes HPB2262]
 gi|293589939|gb|EFF98273.1| LexA repressor [Listeria monocytogenes J2818]
 gi|293593876|gb|EFG01637.1| LexA repressor [Listeria monocytogenes FSL J1-194]
 gi|300513894|gb|EFK40959.1| LexA repressor [Listeria monocytogenes FSL N1-017]
 gi|307570883|emb|CAR84062.1| SOS-response transcriptional repressor [Listeria monocytogenes L99]
 gi|313609012|gb|EFR84748.1| repressor LexA [Listeria monocytogenes FSL F2-208]
 gi|328468589|gb|EGF39589.1| LexA repressor [Listeria monocytogenes 1816]
 gi|328475144|gb|EGF45928.1| LexA repressor [Listeria monocytogenes 220]
 gi|332311746|gb|EGJ24841.1| LexA repressor [Listeria monocytogenes str. Scott A]
          Length = 204

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            + I+E I    +     PS   +    GL  +S        +EG+    R P+     +
Sbjct: 7   QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E E P +   P          +    N      +
Sbjct: 67  IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIDEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +      A +T     +    SM+      GD +I+        G+ ++      +
Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +  + +++
Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPILLNN--VTILGKVI 197


>gi|213691736|ref|YP_002322322.1| SOS-response transcriptional repressor, LexA [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|254809088|sp|B7GQ64|LEXA_BIFLI RecName: Full=LexA repressor
 gi|213523197|gb|ACJ51944.1| SOS-response transcriptional repressor, LexA [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320457830|dbj|BAJ68451.1| LexA repressor [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 241

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 63/219 (28%), Gaps = 9/219 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +K+ +AI    +     PS   +   AGL  P+S  ++ +    +G  R  + +     
Sbjct: 21  QRKVLDAIRTHIDEQGFAPSFREIGNAAGLKSPSSVKHQLQVLEDKGFIRMNANKGRAIE 80

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           + A +    +       +  +T    +         + S      G    G         
Sbjct: 81  VVAGSAPNPEKPSQASEEATSTSNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQHV 140

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +                  +    SM+      GD +++        GD +       + 
Sbjct: 141 DDVMRLPERLTGSGTLFMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLD-DEA 199

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + LM  N  Y     + +    + +++
Sbjct: 200 TVKTF-RKENGHVWLMPHNPAYSPI--DGTHATIMGKVV 235


>gi|30021787|ref|NP_833418.1| LexA repressor [Bacillus cereus ATCC 14579]
 gi|29897343|gb|AAP10619.1| LexA repressor [Bacillus cereus ATCC 14579]
          Length = 210

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 5   MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 64

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 65  TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 106

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 107 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 160

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 161 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 203


>gi|65320962|ref|ZP_00393921.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Bacillus anthracis str. A2012]
 gi|229092669|ref|ZP_04223817.1| LexA repressor [Bacillus cereus Rock3-42]
 gi|229140342|ref|ZP_04268897.1| LexA repressor [Bacillus cereus BDRD-ST26]
 gi|229157270|ref|ZP_04285350.1| LexA repressor [Bacillus cereus ATCC 4342]
 gi|228626334|gb|EEK83081.1| LexA repressor [Bacillus cereus ATCC 4342]
 gi|228642903|gb|EEK99179.1| LexA repressor [Bacillus cereus BDRD-ST26]
 gi|228690696|gb|EEL44473.1| LexA repressor [Bacillus cereus Rock3-42]
          Length = 215

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 10  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 69

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 70  TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 111

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 112 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 165

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 166 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 208


>gi|328955378|ref|YP_004372711.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2]
 gi|328455702|gb|AEB06896.1| transcriptional regulator, XRE family [Coriobacterium glomerans
           PW2]
          Length = 210

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 60/214 (28%), Gaps = 26/214 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I         + + LA++ G       + +    + ++       + K+ +A   TI  L
Sbjct: 6   ISEARHAKGWSQAELAKRIGTTQQQIARYESGDNDVKS-----SVLIKLSSALGVTISYL 60

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L L  +                                            +      +Y 
Sbjct: 61  LGLENTVAAQPAPSFPIPVFGNIAAGTPREALLQSDI-------------VHDTEESLYR 107

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                    T   SM  L+  G +++++ A+ V  GD  ++     D   K +      +
Sbjct: 108 AHKSSFWLITSGNSMNKLFPDGSLVLIDPALPVQNGDVGVVFVNGEDATLKRIFFD-DDA 166

Query: 193 IDLMSLN--CCYPVDTVEMSD-----IEWIARIL 219
           I L   +    Y    +   D     I  I +++
Sbjct: 167 IRLHPESYDPDYRDYVIRQDDPDAPEIRVIGKVV 200


>gi|269102614|ref|ZP_06155311.1| putative cI prophage repressor protein [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162512|gb|EEZ41008.1| putative cI prophage repressor protein [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 220

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 60/225 (26%), Gaps = 20/225 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                ++   + +   +  ++   LA   G   +  +  +        R  S +    + 
Sbjct: 1   MDKKTEVGLRLKQFRAKRGISQKDLADLCGWGASRVSNYESGI-----RSISLDDADTLA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVG 119
                   Q+         +   +   I  +   PS    F        G          
Sbjct: 56  KHLGIKAYQI-----LFDDSELPELMNISTIDIQPSYQNSFPVLSSVQAGIWTEACEPYP 110

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRL-LIK 174
           V  I   +             +    SM       + +G ++++++      G  +    
Sbjct: 111 VETITEWYQTTERTSKNSFWLRVHGDSMTSPTGISFPEGTLVLVDTERAAENGSLVAAKL 170

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K L+   G+   L  LN  YP   +  +    I  I+
Sbjct: 171 TDVNEATFKKLMIDAGQRY-LKPLNPQYPTLPINGN-CRIIGVIV 213


>gi|319897552|ref|YP_004135749.1| phage repressor [Haemophilus influenzae F3031]
 gi|317433058|emb|CBY81431.1| putative phage repressor [Haemophilus influenzae F3031]
          Length = 238

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 71/226 (31%), Gaps = 23/226 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++ E+  ++ +  A+K G+ P + ++  +   +     P+  ++ K+   T   I 
Sbjct: 13  ERMTKIIEKEGVSINSFAQKLGVSPPTISRWMKGEAD-----PTRSNLIKLAEQTGINIE 67

Query: 71  Q--------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-P 121
                        P ++      + + I                     G         P
Sbjct: 68  WLAIGAGPKYWQNPITEEIILRGQPQPIESSNDETFSVIEDCREVRISAGGGGFNDEYKP 127

Query: 122 EIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
              +     +                   SM P  + G+ +I++ + +     ++ +   
Sbjct: 128 YQTTKVEKAWLDSRRLKAEDCAMFLVSGDSMYPTLKDGEEIIVDRSKKELKDGKIFVLNN 187

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            G ++ K +       I L+S N  Y    + +     +  I +++
Sbjct: 188 EGAMLVKKVQ-ITYNGITLISQNTEYAPIELNVEQANNLIVIGQVV 232


>gi|304413958|ref|ZP_07395375.1| putative prophage repressor CI [Candidatus Regiella insecticola
           LSR1]
 gi|304283678|gb|EFL92073.1| putative prophage repressor CI [Candidatus Regiella insecticola
           LSR1]
          Length = 215

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 15/216 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +        LT   LA++      +  + +    + R R+   E    +       
Sbjct: 3   IADRVRSRRTELGLTQKDLAKRVDTSQQAIEQLENGKTK-RPRYLP-ELANALNCQLYWL 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +         +        K   +           +   + P  N       PE  +   
Sbjct: 61  LNGGEHKDKPNNVAYITPHKRTKVYPLIRWAQARNWSESIEPYYNLSEIEEWPESAAHVM 120

Query: 129 GIYAIQTQDTRHKTQDTSMLPLY----RKGDILILNSAIQVNCGDRLL-IKPRTGDIVAK 183
                  +    + +  SM  L      +  ++++++  +V  G+ ++       +   K
Sbjct: 121 ------GEAFWLRVKGDSMTSLIGVSVSENTLILVDTGREVKDGNLVIAKLTDANEATFK 174

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             I   G++  L  LN  YP+  +  +  + I  ++
Sbjct: 175 KYIIDAGKNY-LKPLNPSYPLIPINGN-CQIIGVVI 208


>gi|170689612|ref|ZP_02880795.1| LexA repressor [Bacillus anthracis str. A0465]
 gi|190569392|ref|ZP_03022281.1| LexA repressor [Bacillus anthracis Tsiankovskii-I]
 gi|196034268|ref|ZP_03101678.1| LexA repressor [Bacillus cereus W]
 gi|196038260|ref|ZP_03105569.1| LexA repressor [Bacillus cereus NVH0597-99]
 gi|196044697|ref|ZP_03111932.1| LexA repressor [Bacillus cereus 03BB108]
 gi|217961124|ref|YP_002339692.1| LexA repressor [Bacillus cereus AH187]
 gi|218235898|ref|YP_002368503.1| LexA repressor [Bacillus cereus B4264]
 gi|225865673|ref|YP_002751051.1| LexA repressor [Bacillus cereus 03BB102]
 gi|227813477|ref|YP_002813486.1| LexA repressor [Bacillus anthracis str. CDC 684]
 gi|228909512|ref|ZP_04073337.1| LexA repressor [Bacillus thuringiensis IBL 200]
 gi|228916323|ref|ZP_04079893.1| LexA repressor [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228922398|ref|ZP_04085704.1| LexA repressor [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228928739|ref|ZP_04091775.1| LexA repressor [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228934970|ref|ZP_04097801.1| LexA repressor [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228940774|ref|ZP_04103335.1| LexA repressor [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228947308|ref|ZP_04109602.1| LexA repressor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228959879|ref|ZP_04121552.1| LexA repressor [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228973693|ref|ZP_04134273.1| LexA repressor [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980251|ref|ZP_04140563.1| LexA repressor [Bacillus thuringiensis Bt407]
 gi|228986781|ref|ZP_04146910.1| LexA repressor [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229047374|ref|ZP_04192972.1| LexA repressor [Bacillus cereus AH676]
 gi|229071195|ref|ZP_04204420.1| LexA repressor [Bacillus cereus F65185]
 gi|229080952|ref|ZP_04213466.1| LexA repressor [Bacillus cereus Rock4-2]
 gi|229123207|ref|ZP_04252413.1| LexA repressor [Bacillus cereus 95/8201]
 gi|229128963|ref|ZP_04257938.1| LexA repressor [Bacillus cereus BDRD-Cer4]
 gi|229146256|ref|ZP_04274631.1| LexA repressor [Bacillus cereus BDRD-ST24]
 gi|229151887|ref|ZP_04280085.1| LexA repressor [Bacillus cereus m1550]
 gi|229179975|ref|ZP_04307320.1| LexA repressor [Bacillus cereus 172560W]
 gi|229185925|ref|ZP_04313098.1| LexA repressor [Bacillus cereus BGSC 6E1]
 gi|229191777|ref|ZP_04318753.1| LexA repressor [Bacillus cereus ATCC 10876]
 gi|229197806|ref|ZP_04324524.1| LexA repressor [Bacillus cereus m1293]
 gi|229604907|ref|YP_002867876.1| LexA repressor [Bacillus anthracis str. A0248]
 gi|254682251|ref|ZP_05146112.1| LexA repressor [Bacillus anthracis str. CNEVA-9066]
 gi|254720877|ref|ZP_05182668.1| LexA repressor [Bacillus anthracis str. A1055]
 gi|254751264|ref|ZP_05203301.1| LexA repressor [Bacillus anthracis str. Vollum]
 gi|254756790|ref|ZP_05208819.1| LexA repressor [Bacillus anthracis str. Australia 94]
 gi|300119524|ref|ZP_07057075.1| LexA repressor [Bacillus cereus SJ1]
 gi|170666416|gb|EDT17196.1| LexA repressor [Bacillus anthracis str. A0465]
 gi|190559512|gb|EDV13508.1| LexA repressor [Bacillus anthracis Tsiankovskii-I]
 gi|195993342|gb|EDX57300.1| LexA repressor [Bacillus cereus W]
 gi|196024732|gb|EDX63404.1| LexA repressor [Bacillus cereus 03BB108]
 gi|196030668|gb|EDX69266.1| LexA repressor [Bacillus cereus NVH0597-99]
 gi|217063594|gb|ACJ77844.1| LexA repressor [Bacillus cereus AH187]
 gi|218163855|gb|ACK63847.1| LexA repressor [Bacillus cereus B4264]
 gi|225789216|gb|ACO29433.1| LexA repressor [Bacillus cereus 03BB102]
 gi|227005191|gb|ACP14934.1| LexA repressor [Bacillus anthracis str. CDC 684]
 gi|228585679|gb|EEK43779.1| LexA repressor [Bacillus cereus m1293]
 gi|228591716|gb|EEK49559.1| LexA repressor [Bacillus cereus ATCC 10876]
 gi|228597637|gb|EEK55284.1| LexA repressor [Bacillus cereus BGSC 6E1]
 gi|228603509|gb|EEK60985.1| LexA repressor [Bacillus cereus 172560W]
 gi|228631592|gb|EEK88223.1| LexA repressor [Bacillus cereus m1550]
 gi|228637315|gb|EEK93770.1| LexA repressor [Bacillus cereus BDRD-ST24]
 gi|228654508|gb|EEL10371.1| LexA repressor [Bacillus cereus BDRD-Cer4]
 gi|228660300|gb|EEL15934.1| LexA repressor [Bacillus cereus 95/8201]
 gi|228702369|gb|EEL54841.1| LexA repressor [Bacillus cereus Rock4-2]
 gi|228711936|gb|EEL63886.1| LexA repressor [Bacillus cereus F65185]
 gi|228723999|gb|EEL75346.1| LexA repressor [Bacillus cereus AH676]
 gi|228772953|gb|EEM21390.1| LexA repressor [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228779483|gb|EEM27738.1| LexA repressor [Bacillus thuringiensis Bt407]
 gi|228786016|gb|EEM34015.1| LexA repressor [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228799817|gb|EEM46761.1| LexA repressor [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228812555|gb|EEM58882.1| LexA repressor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228818889|gb|EEM64953.1| LexA repressor [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228824870|gb|EEM70671.1| LexA repressor [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228831058|gb|EEM76659.1| LexA repressor [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228837273|gb|EEM82608.1| LexA repressor [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228843521|gb|EEM88599.1| LexA repressor [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228850289|gb|EEM95118.1| LexA repressor [Bacillus thuringiensis IBL 200]
 gi|229269315|gb|ACQ50952.1| LexA repressor [Bacillus anthracis str. A0248]
 gi|298723094|gb|EFI63985.1| LexA repressor [Bacillus cereus SJ1]
          Length = 223

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 18  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 78  TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 120 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216


>gi|296454446|ref|YP_003661589.1| SOS-response transcriptional repressor LexA [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183877|gb|ADH00759.1| SOS-response transcriptional repressor, LexA [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 241

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 61/220 (27%), Gaps = 11/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +K+ +AI    +     PS   +   AGL  P+S  ++ +    +G  R  S      I
Sbjct: 21  QRKVLDAIRTHIDEQGFAPSFREIGNAAGLKSPSSVKHQLQVLEDKGFIRM-SANKGRAI 79

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGV 120
                           S+  T+     EI        + S      G    G        
Sbjct: 80  EVMAGSAPNAEKPSQASEEATSASNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQH 139

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +                  +    SM+      GD +++        GD +       +
Sbjct: 140 VDDVMRLPERLTGSGTLFMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLD-DE 198

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +    + LM  N  Y     + +    + +++
Sbjct: 199 ATVKTF-RKENGHVWLMPHNPAYSPI--DGTHATIMGKVV 235


>gi|229489001|ref|ZP_04382867.1| repressor LexA [Rhodococcus erythropolis SK121]
 gi|229324505|gb|EEN90260.1| repressor LexA [Rhodococcus erythropolis SK121]
          Length = 241

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 32/222 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNK-SKRFGIEGRNRWPSTESI 58
               ++I   I  +   +  TPS   +    GL   ++ +K  K    +G  R     ++
Sbjct: 41  PLRQQQILMTIRDLVAANGCTPSTRQIGDAVGLRSTSTVSKHLKSLEEKGFLR--RGAAM 98

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L                       KE+        P        + +    +    +
Sbjct: 99  ARQLDVRPF--------------LVGAKEQSSSNTVTVPVVGDIAAGAPILAEEHADEVL 144

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P                   + +  SM+      GD++++    + + G+ +      
Sbjct: 145 ALPRELVGS-------GTVFGLRVRGESMVDAAICDGDVVVVRRQDEAHSGEIVAAMID- 196

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   KVL  R    + L   N  Y    ++      + +++
Sbjct: 197 GEATVKVLRRR-DGHVYLEPRNPAYS--VIDGDRAVILGKVV 235


>gi|301513073|ref|ZP_07238310.1| phage-like repressor [Acinetobacter baumannii AB058]
          Length = 248

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 59/242 (24%), Gaps = 31/242 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR--------------NRWPS 54
           + + I        L+ + L R  G    + +                        +RW  
Sbjct: 5   VSDRIQSRMAELKLSQADLMRLTGAARGTVSGWVNGSNNPSAKHIEALATALKTTSRWIL 64

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFP 110
           T    + L   N               ++               G  GF         F 
Sbjct: 65  TGKEKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSASVVEYGGDDGFIWIDVVEASFS 124

Query: 111 TGNKWNTVGVPEIRSPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGDILILNS 161
            G    ++            +                  K +  SM      GD++ ++ 
Sbjct: 125 CGTG-ESIEFHFDVINGKQPFPPSFFKQKNVHPDCMRIIKAKGDSMADKIDDGDLVGIDI 183

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218
           +       ++      G+ + K +    G  + L SLN  Y    V      + + + R 
Sbjct: 184 SQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNFKVMGRQ 243

Query: 219 LW 220
            W
Sbjct: 244 FW 245


>gi|171779415|ref|ZP_02920379.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282032|gb|EDT47463.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 226

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 65/226 (28%), Gaps = 17/226 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FS +K    +  + + +  + + LA++  +   S+   +    +   +       IFK+
Sbjct: 1   MFSGEK----LKALRQENGYSQADLAKRLQISRASYFNWENGKTKPNQKNLGQLSQIFKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTE-------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                 +   +++                 K   +   +  P      +        G  
Sbjct: 57  DETYFLSEHDIVNTYLQLNPDNRLKLENYAKNLLKEQEIVKPLPKLYSYKVFEKLSAGTG 116

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           ++     +              D        SM P Y  G+++++        G  +   
Sbjct: 117 YSY--FGDGNYDTVFYDEQLDHDFASWVFGDSMEPTYLNGEVVLIKQTDFDYDG-AIYAV 173

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
              G    K +       + L+SLN  Y         +   I +I+
Sbjct: 174 DWDGQTYIKKIYREEDG-LRLVSLNKHYADKFAPYYENPRIIGKIV 218


>gi|283458467|ref|YP_003363093.1| SOS-response transcriptional repressor [Rothia mucilaginosa DY-18]
 gi|283134508|dbj|BAI65273.1| SOS-response transcriptional repressor [Rothia mucilaginosa DY-18]
          Length = 245

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +KI +AI    E+    PS   +    GL   +S  ++  R    G  R      + + 
Sbjct: 34  QQKILDAIRTEIEQKGYPPSMRQIGDMVGLASLSSVTHQLGRLETMGYIR--RDPKLPRA 91

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +   +E    +     S        E     L   P          +    +  + + +P
Sbjct: 92  IEVLDENGVGMHGSASSSLPELPNFEVGDEDLVPVPLVGRIAAGGPITAEQSVEDVLALP 151

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                +        +    K +  SM+      GD +++      + GD +       + 
Sbjct: 152 RQLVGN-------GKLFMLKVKGDSMIDAAICDGDWVVVREQHTADNGDIVAALLD-DEA 203

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             KV   +      LM  N  Y            + +++
Sbjct: 204 TVKVF-RQVDGHTWLMPRNSNYEPIM--GDRATVMGKVV 239


>gi|309379937|emb|CBX21348.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 234

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 4/171 (2%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           PS  +   I          +              +  + + Y   S   G   +   P  
Sbjct: 64  PSEPTPVLIDPNLPHEAKDIHRPMTWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDY 123

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           N +    +P  +S                    SM     +   + +++        ++ 
Sbjct: 124 NGY---RLPFGKSTLKRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETTIRDGKIY 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
              + G    K LI + G ++ + S N   YP +T  +  +  I R+ W S
Sbjct: 181 AFAQDGMFRVKYLIRQPGNNVLIRSHNSSFYPDETAPLDSLTVIGRVFWWS 231


>gi|294010738|ref|YP_003544198.1| LexA-family protein [Sphingobium japonicum UT26S]
 gi|292674068|dbj|BAI95586.1| LexA-family protein [Sphingobium japonicum UT26S]
          Length = 223

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 16/223 (7%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           + +     ++R+      + S L+R    +P    +  +    G  R    E    +   
Sbjct: 4   TGEDPRMVLERLIAERGDSYSDLSRLLNRNPAYIQQFIKR---GTPRKLDEEDRRILARY 60

Query: 65  TNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                  L          +          +P L    S   G  D      G     +  
Sbjct: 61  FGVAEEMLGGSAQRGAPPSRVRSLPSVVSVPRLSLGASAGPGSLDEDERAAG----LMAF 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGD 179
                 H G+     + +  +    SM P    GD +++N         D + +    G 
Sbjct: 117 DANWLRHLGV--RPQKISIIRVDGESMAPTLSDGDEIMVNHDDDAERLRDGVYVLRLDGV 174

Query: 180 IVAKVLISRRGRS-IDLMSLNCCYPV-DTVEMSDIEWIARILW 220
           ++ K +     R    ++S N  YP    ++ + +  + R++W
Sbjct: 175 LMVKRVAMGPRRGFFSVLSDNPHYPDWIDIDPALVVIVGRVVW 217


>gi|54025770|ref|YP_120012.1| LexA repressor [Nocardia farcinica IFM 10152]
 gi|71658805|sp|Q5YT43|LEXA2_NOCFA RecName: Full=LexA repressor 2
 gi|54017278|dbj|BAD58648.1| putative repressor of the SOS regulon [Nocardia farcinica IFM
           10152]
          Length = 243

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 18/221 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
            +K+ E I          PS   +    GL  TS   ++ +    +G   R P+      
Sbjct: 28  QRKVLEVIRTSVSERGYPPSIREIGDAVGLTSTSSVAHQLRALERKGYLRRDPNRPRAVD 87

Query: 61  ILAATN-ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +            L     +   T  ++   P   F P          +       +   
Sbjct: 88  VRGLDEAVRAVTALPGAALEEPDTLAEDTGRPTPTFVPVLGRIAAGGPILAEQAVEDVFP 147

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P                   +    SM+      GD +++        GD +      G
Sbjct: 148 LPRELVG-------DGSLFLLRVVGQSMVDAAICDGDWVVVRQQNVAENGDIVAAMID-G 199

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K      G+ + LM  N  +       +D   + +++
Sbjct: 200 EATVKTFKR-TGKDVWLMPHNPLFEPI--PGNDARILGKVV 237


>gi|228953973|ref|ZP_04116003.1| LexA repressor [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228805695|gb|EEM52284.1| LexA repressor [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 223

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 18  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 78  TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 120 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216


>gi|226328124|ref|ZP_03803642.1| hypothetical protein PROPEN_02015 [Proteus penneri ATCC 35198]
 gi|225203828|gb|EEG86182.1| hypothetical protein PROPEN_02015 [Proteus penneri ATCC 35198]
          Length = 214

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 58/204 (28%), Gaps = 23/204 (11%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP----FSDGRTTEKKEKE 89
              + ++             +T++I K  +        +            RT +++E  
Sbjct: 5   TQGAVSQYLNGRT-----ALNTDTILKFASLLRVDPEDINPELKTLLDYVRRTGKEEEST 59

Query: 90  IPLLYFPPSGSGGF-FDSGVFPTGNK----------WNTVGVPEIRSPHNGIYAIQTQDT 138
             L+    +              G              ++     +              
Sbjct: 60  KQLIPSTQNEHTTLKLMDVYAKAGPGGFINSDFPDTIKSIEFSPEKVFELFGRKSLKGIE 119

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                  SM P     D++ +++  +   GD + I      +  K L   +GR + + S 
Sbjct: 120 IINISGDSMSPAINPRDVVFVDTHNEFFDGDGVYIFSFENSLFIKRLQRVKGRKLAVKSD 179

Query: 199 NCCYPVDTVEMS---DIEWIARIL 219
           N  Y    +E S   D+  I +++
Sbjct: 180 NPAYETFYIEESEMYDLRIIGKVI 203


>gi|117926824|ref|YP_867441.1| phage lambda repressor protein. serine peptidase. MEROPS family S24
           [Magnetococcus sp. MC-1]
 gi|117610580|gb|ABK46035.1| phage repressor protein, Serine peptidase, MEROPS family S24
           [Magnetococcus sp. MC-1]
          Length = 235

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 15/199 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA-AT 65
             + E +    +   ++ S LAR+ G+ P +             R   T    ++L    
Sbjct: 25  NTLGERLRMALDHVGMSQSELARRVGIRPQTVQHVCAGHT---RRSGYTAEFAQVLGVRP 81

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                    L            + +P+L +                G  ++ V V +   
Sbjct: 82  EWLAIGHGSLREFANEQNSGAVRRLPMLNWSNVIHWSQSGYQAQQMGEVYDLVEVTKPFG 141

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKV 184
            H             K    SM P   +G  ++++ A        ++       +   K 
Sbjct: 142 NH---------AFALKVGGDSMEPKVPEGSTILVDPAYVAQNNYLVIAHLEGEPEATFKQ 192

Query: 185 LISRRGRSIDLMSLNCCYP 203
           L+   G    L  LN  YP
Sbjct: 193 LVLEGGGRY-LKPLNPRYP 210


>gi|325849104|ref|ZP_08170596.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480349|gb|EGC83412.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 202

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 21/212 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++ +    T   LA+   +  +S    +R       R PS + + K     + +
Sbjct: 3   VGVRLKQLRKSSGKTQRDLAKLLYVTASSIGMYERDE-----RTPSPDVLKKYADIFDVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  +L           +  K+                  +    +  +T  +        
Sbjct: 58  LDYILGHS--------RNLKKGEDYATINVYGSIPAGIPIEAIEDISDTEDISF------ 103

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
             +         K +  SM P Y +GD +IL        G    +     +   K +I  
Sbjct: 104 KDFDKNKTYIGLKVEGDSMYPKYLQGDTIILELTPDCESGTDAAVYVNGYEATLKTVIKN 163

Query: 189 RGRSIDLMSLNCCYPVDTVEMSD--IEWIARI 218
              +I LM +N  YP  T    D  I+ +  +
Sbjct: 164 DNGTITLMPINTSYPPKTYGKDDDPIKILGIV 195


>gi|259501439|ref|ZP_05744341.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190837|ref|ZP_07267091.1| phage repressor protein, putative [Lactobacillus iners AB-1]
 gi|259167188|gb|EEW51683.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
          Length = 231

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 58/227 (25%), Gaps = 28/227 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL---------A 63
           ID    ++NLT   L +K G   +S ++          R+P  E I +I           
Sbjct: 12  IDYFRRQNNLTMEELGQKLGKATSSISRWVSGE-----RYPKIEEIEQIAIFFNTDIYTL 66

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG----------FFDSGVFPTGN 113
                  +                ++  +  +                  +  G    G 
Sbjct: 67  IFGFNYNENSKSNILTVYNQLADIRKHKVYSYAQQQLDEQNSNLNKKRSIYVVGTSAAGE 126

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                         +        D     +  SM P      I+  +    +  G+  + 
Sbjct: 127 PIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGEIGIF 183

Query: 174 KPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +     +  K        + I L S+N  Y         +  + +++
Sbjct: 184 EINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 230


>gi|30263637|ref|NP_846014.1| LexA repressor [Bacillus anthracis str. Ames]
 gi|42782777|ref|NP_980024.1| LexA repressor [Bacillus cereus ATCC 10987]
 gi|47529044|ref|YP_020393.1| LexA repressor [Bacillus anthracis str. 'Ames Ancestor']
 gi|47569215|ref|ZP_00239901.1| LexA repressor [Bacillus cereus G9241]
 gi|49479254|ref|YP_037766.1| LexA repressor [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118478924|ref|YP_896075.1| LexA repressor [Bacillus thuringiensis str. Al Hakam]
 gi|165873206|ref|ZP_02217818.1| LexA repressor [Bacillus anthracis str. A0488]
 gi|167641981|ref|ZP_02400215.1| LexA repressor [Bacillus anthracis str. A0193]
 gi|170709289|ref|ZP_02899707.1| LexA repressor [Bacillus anthracis str. A0389]
 gi|177655861|ref|ZP_02937076.1| LexA repressor [Bacillus anthracis str. A0174]
 gi|206968656|ref|ZP_03229611.1| LexA repressor [Bacillus cereus AH1134]
 gi|206978303|ref|ZP_03239180.1| LexA repressor [Bacillus cereus H3081.97]
 gi|218904824|ref|YP_002452658.1| LexA repressor [Bacillus cereus AH820]
 gi|222097154|ref|YP_002531211.1| lexa repressor [Bacillus cereus Q1]
 gi|254733655|ref|ZP_05191371.1| LexA repressor [Bacillus anthracis str. Western North America
           USA6153]
 gi|296504190|ref|YP_003665890.1| LexA repressor [Bacillus thuringiensis BMB171]
 gi|301055183|ref|YP_003793394.1| LexA repressor [Bacillus anthracis CI]
 gi|33301235|sp|Q81Y06|LEXA_BACAN RecName: Full=LexA repressor
 gi|47605794|sp|P61606|LEXA_BACC1 RecName: Full=LexA repressor
 gi|71658806|sp|Q637D7|LEXA_BACCZ RecName: Full=LexA repressor
 gi|71658807|sp|Q6HFB0|LEXA_BACHK RecName: Full=LexA repressor
 gi|166224554|sp|A0RH75|LEXA_BACAH RecName: Full=LexA repressor
 gi|172046605|sp|Q81A92|LEXA_BACCR RecName: Full=LexA repressor
 gi|226736096|sp|B7JIC6|LEXA_BACC0 RecName: Full=LexA repressor
 gi|254809087|sp|B9IUL2|LEXA_BACCQ RecName: Full=LexA repressor
 gi|30258272|gb|AAP27500.1| LexA repressor [Bacillus anthracis str. Ames]
 gi|42738704|gb|AAS42632.1| LexA repressor [Bacillus cereus ATCC 10987]
 gi|47504192|gb|AAT32868.1| LexA repressor [Bacillus anthracis str. 'Ames Ancestor']
 gi|47554089|gb|EAL12454.1| LexA repressor [Bacillus cereus G9241]
 gi|49330810|gb|AAT61456.1| LexA repressor (SOS response repressor) [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118418149|gb|ABK86568.1| SOS-response transcriptional repressor, LexA [Bacillus
           thuringiensis str. Al Hakam]
 gi|164711043|gb|EDR16608.1| LexA repressor [Bacillus anthracis str. A0488]
 gi|167510074|gb|EDR85486.1| LexA repressor [Bacillus anthracis str. A0193]
 gi|170125798|gb|EDS94707.1| LexA repressor [Bacillus anthracis str. A0389]
 gi|172079958|gb|EDT65062.1| LexA repressor [Bacillus anthracis str. A0174]
 gi|206735697|gb|EDZ52855.1| LexA repressor [Bacillus cereus AH1134]
 gi|206743507|gb|EDZ54937.1| LexA repressor [Bacillus cereus H3081.97]
 gi|218535278|gb|ACK87676.1| LexA repressor [Bacillus cereus AH820]
 gi|221241212|gb|ACM13922.1| LexA repressor (SOS response repressor) [Bacillus cereus Q1]
 gi|296325242|gb|ADH08170.1| LexA repressor [Bacillus thuringiensis BMB171]
 gi|300377352|gb|ADK06256.1| LexA repressor [Bacillus cereus biovar anthracis str. CI]
 gi|324327592|gb|ADY22852.1| LexA repressor [Bacillus thuringiensis serovar finitimus YBT-020]
 gi|326941407|gb|AEA17303.1| LexA repressor [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 206

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 1   MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 61  TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 102

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 103 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 156

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 157 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 199


>gi|23335465|ref|ZP_00120701.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Bifidobacterium longum DJO10A]
 gi|23465871|ref|NP_696474.1| LexA repressor [Bifidobacterium longum NCC2705]
 gi|189439030|ref|YP_001954111.1| LexA repressor [Bifidobacterium longum DJO10A]
 gi|227547542|ref|ZP_03977591.1| repressor lexA [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239621152|ref|ZP_04664183.1| LexA repressor [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312132470|ref|YP_003999809.1| lexa1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689520|ref|YP_004209254.1| LexA repressor [Bifidobacterium longum subsp. infantis 157F]
 gi|322691477|ref|YP_004221047.1| LexA repressor [Bifidobacterium longum subsp. longum JCM 1217]
 gi|29427809|sp|Q8G4R6|LEXA_BIFLO RecName: Full=LexA repressor
 gi|229621208|sp|B3DQB4|LEXA_BIFLD RecName: Full=LexA repressor
 gi|23326573|gb|AAN25110.1| LexA repressor [Bifidobacterium longum NCC2705]
 gi|189427465|gb|ACD97613.1| SOS-response transcriptional repressor [Bifidobacterium longum
           DJO10A]
 gi|227211952|gb|EEI79848.1| repressor lexA [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239515613|gb|EEQ55480.1| LexA repressor [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|311773397|gb|ADQ02885.1| LexA1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456333|dbj|BAJ66955.1| LexA repressor [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460856|dbj|BAJ71476.1| LexA repressor [Bifidobacterium longum subsp. infantis 157F]
          Length = 241

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 63/219 (28%), Gaps = 9/219 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +K+ +AI    +     PS   +   AGL  P+S  ++ +    +G  R  + +     
Sbjct: 21  QRKVLDAIRTHIDEQGFAPSFREIGNAAGLKSPSSVKHQLQVLEDKGFIRMNANKGRAIE 80

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           + A +    +       +  +T    +         + S      G    G         
Sbjct: 81  VVAGSAPNAEKPSQASEEATSTSNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQHV 140

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +                  +    SM+      GD +++        GD +       + 
Sbjct: 141 DDVMRLPERLTGSGTLFMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLD-DEA 199

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + LM  N  Y     + +    + +++
Sbjct: 200 TVKTF-RKENGHVWLMPHNPAYSPI--DGTHATIMGKVV 235


>gi|317124566|ref|YP_004098678.1| SOS-response transcriptional repressor, LexA [Intrasporangium
           calvum DSM 43043]
 gi|315588654|gb|ADU47951.1| SOS-response transcriptional repressor, LexA [Intrasporangium
           calvum DSM 43043]
          Length = 247

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 56/220 (25%), Gaps = 11/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            +++ E I    +R    PS   +    GL   S    +   +  +    R P+     +
Sbjct: 25  QRRVLEVIRNSVDRRGYPPSMREIGDAVGLSSPSSVSHQLNALVAKGYLRRDPNRPRALE 84

Query: 61  ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           I++                    +  +             +      G    G       
Sbjct: 85  IVSPDAGPASSGRRRGTSGVESGSGAQYDTETDSGDARPAAAYVPVLGQIAAGVPILAEE 144

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V E   P       +      K    SM       GD +++        GD +     + 
Sbjct: 145 VVEDVFPLPRQIVGEGNLFLLKVVGDSMIEAAICDGDWVVVRQQPTAENGDIVAALLDS- 203

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +   K    +    + L+  N  +     +      + ++
Sbjct: 204 EATVKTFKRK-DGHVWLLPHNPEFSPI--DGDHATVLGKV 240


>gi|169632796|ref|YP_001706532.1| phage-like repressor [Acinetobacter baumannii SDF]
 gi|169151588|emb|CAP00365.1| hypothetical protein; putative phage related repressor
           [Acinetobacter baumannii]
          Length = 248

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 59/242 (24%), Gaps = 31/242 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR--------------NRWPS 54
           + + I        L+ + L R  G    + +                        +RW  
Sbjct: 5   VSDRIQSRMAELKLSQADLMRLTGAARGTVSGWVNGSNNPSAKHIEALATALKTTSRWIL 64

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFP 110
           T    + L   N               ++               G  GF         F 
Sbjct: 65  TGKEKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDVVEASFS 124

Query: 111 TGNKWNTVGVPEIRSPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGDILILNS 161
            G    ++            +                  K +  SM      GD++ ++ 
Sbjct: 125 CGTG-ESIDFHFDVINGKQPFPPGFFKQKNVHPDCMRIIKAKGDSMADKIDDGDLVGIDI 183

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218
           +       ++      G+ + K +    G  + L SLN  Y    V      + + + R 
Sbjct: 184 SQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNFKVMGRQ 243

Query: 219 LW 220
            W
Sbjct: 244 FW 245


>gi|108799135|ref|YP_639332.1| LexA repressor [Mycobacterium sp. MCS]
 gi|119868250|ref|YP_938202.1| LexA repressor [Mycobacterium sp. KMS]
 gi|126434743|ref|YP_001070434.1| LexA repressor [Mycobacterium sp. JLS]
 gi|122977074|sp|Q1BA08|LEXA_MYCSS RecName: Full=LexA repressor
 gi|171769148|sp|A1UF04|LEXA_MYCSK RecName: Full=LexA repressor
 gi|171855232|sp|A3PYG6|LEXA_MYCSJ RecName: Full=LexA repressor
 gi|108769554|gb|ABG08276.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp.
           MCS]
 gi|119694339|gb|ABL91412.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp.
           KMS]
 gi|126234543|gb|ABN97943.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp.
           JLS]
          Length = 230

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 25/220 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
            + I E I          PS   +    GL  TS   ++ +    +G   R P+      
Sbjct: 24  QRTILEVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPNRPRAVD 83

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    ++     +      G     +   +P+L    +G                +   +
Sbjct: 84  V--RLSDEPATPVVTTDVAGSDALPEPTFVPVLGRIAAGGPI------LAEEAVEDVFPL 135

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P            +      K    SM+      GD +++      + GD +      G+
Sbjct: 136 PRELVG-------EGSLFLLKVVGDSMVDAAICDGDWVVVRQQAVADNGDIVAAMID-GE 187

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     RG+ + LM  N  +       +D   + +++
Sbjct: 188 ATVKTFKRSRGQ-VWLMPHNPAFEPI--PGNDAAVLGKVV 224


>gi|116627720|ref|YP_820339.1| XRE family transcriptional regulator [Streptococcus thermophilus
           LMD-9]
 gi|116100997|gb|ABJ66143.1| transcriptional regulator [Streptococcus thermophilus LMD-9]
          Length = 229

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 16/222 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68
            + +  + E   ++ + +A+  G+  +S+   +    +   +  S    +F +      +
Sbjct: 4   GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63

Query: 69  ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +++++         +          +E+E      P      +        G  +   
Sbjct: 64  EHEIVEVYLELNEENRQEALRFTKALLEEQEAEKKKAPVIPLYSYKVFERLSAGIGYTY- 122

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +              D        SM P Y  G+++++        GD +      G
Sbjct: 123 -FGDGNYDEVFYDEEIDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDGD-VYAVDWDG 180

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +       + L+SLN  Y        +    I +I+
Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221


>gi|71736889|ref|YP_274369.1| prophage PSPPH03, Cro/CI family transcriptional regulator
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557442|gb|AAZ36653.1| prophage PSPPH03, transcriptional regulator, Cro/CI family
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 286

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 66/254 (25%), Gaps = 52/254 (20%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----------------------- 55
              L+   +A +AG+ P + N   +       R+ +                        
Sbjct: 28  ELKLSQKKIADEAGMTPAAVNLYFKGINPLNTRFAAVLSRMLQEPVERFSPRLAKEIAAL 87

Query: 56  -----------------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
                            + I K          Q +     +        +          
Sbjct: 88  TNAAKPAASQSSVDIVQQMIAKHGKNLPADARQKIADAVEEVAANVPIAEVASRPGAVGD 147

Query: 99  GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI----------YAIQTQDTRHKTQDTSML 148
                        G        PE+                 +A             SM 
Sbjct: 148 EVSIAHYDVRAAMGGGQIPHDYPEMLQDVRVSPRHLREMGVEFAEHFHLKMVTGWGQSMA 207

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           P  +  D L+++ +I+   GD + +    G +  K L       I ++S N  +P +T++
Sbjct: 208 PTIKHRDPLLVDISIREFAGDGIYMFSWDGHLYIKRLQWMGDGKIKMISDNTRHPPETIK 267

Query: 209 MSDIEWIARI--LW 220
           + +    AR+  +W
Sbjct: 268 VDETFIQARVLLVW 281


>gi|323489633|ref|ZP_08094860.1| LexA repressor [Planococcus donghaensis MPA1U2]
 gi|323396764|gb|EGA89583.1| LexA repressor [Planococcus donghaensis MPA1U2]
          Length = 206

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 54/226 (23%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   S   + I   I          PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MKKVSKRQEDILTFIKEEVRLKGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIR--- 57

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                                   +  +TE+   +   +   P          +    N 
Sbjct: 58  ---------------RDPTKPRAIEVISTEEALIDKSPVLHVPLIGKVTAGMPITAIENV 102

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P+     +            +    SM       GD +++      N GD ++ 
Sbjct: 103 EEYFPLPQSYGTEDD------HIFMLEIMGESMIEAGILNGDYVVVKQQQTANNGDIVVA 156

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K           L   N       V    +  + +++
Sbjct: 157 MTAEDEATVKRFFR-EDNYFRLQPENSSMDPIIV--DQVSILGKVV 199


>gi|295102328|emb|CBK99873.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Faecalibacterium prausnitzii L2-6]
          Length = 208

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 24/221 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S   +   I +  E+ +L+   LA + G    +S  K ++   +   R    E +   L
Sbjct: 1   MSDTDLSSRIRQRREQLSLSQEELAARMGYRSKSSITKLEKGINDL-PRA-KLEELAAAL 58

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T   +  L DLP        +   E+  +    S + G   +      N    +GVP 
Sbjct: 59  DTTPAWLMGLADLP--CPPPGFEPLPEMARVPLVGSIACGTPIT---AEQNIECYIGVPA 113

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D       +SM P    GDI+ +    +V  G+   ++    +   
Sbjct: 114 AWHA----------DFALTCHGSSMAPTICDGDIVCIRRQPEVEQGEIAAVRI-GEEATL 162

Query: 183 KVLISRRGRSIDLMSLNCCY-PVDTV---EMSDIEWIARIL 219
           K    + G ++ L++ N    P       ++ +I+   R +
Sbjct: 163 KHFHRQ-GETVMLLADNTAVCPPMVFAGPQLEEIQIEGRAV 202


>gi|289166201|ref|YP_003456339.1| phage repressor [Legionella longbeachae NSW150]
 gi|288859374|emb|CBJ13310.1| putative phage repressor [Legionella longbeachae NSW150]
          Length = 229

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M     KKI + I    +   LT   LA   G L  +  N  +R      +R P    I 
Sbjct: 1   MDMNIKKKIGQRIMIERKAKGLTRKALAELTGELKISRINNYERG-----DRTPGPTEIK 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-V 118
            +      +   L+ L  +      K      L+           D+ +       +T V
Sbjct: 56  LLADVLEVSASYLMCLTDNREGKITKSPGMGALIPVLDYKQAADLDNCIQKIKEDVDTRV 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRT 177
               + S  +   +I       + +D SM+P +R  DILIL+       GD ++      
Sbjct: 116 EFIPVSSVVSD--SIGKNAFALQIKDESMVPEFRINDILILDPETSPKPGDFVVALIEGE 173

Query: 178 GDIVAKVLI----SRRGRSIDLMSLNCCYPVDTVEMSDIE--WIA 216
            +++ +       S+  +  +L++LN  +    V  S+++   I 
Sbjct: 174 QEVIIRKYKQLSASKEAQQFELIALNEDWADIRVGFSEMKAQIIG 218


>gi|260426022|ref|ZP_05780001.1| putative phage repressor [Citreicella sp. SE45]
 gi|260420514|gb|EEX13765.1| putative phage repressor [Citreicella sp. SE45]
          Length = 224

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 15/224 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +  AI+   ER  L+ S  ++ A  +P+     K    + R R    +++  +    +
Sbjct: 2   DDLVSAIEAALERKGLSASAASQLAVGNPSMIKNLKNRRTD-RERSHPVDNLKALADVLD 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I        S       +   +   Y     S                    P     
Sbjct: 61  LEIYFGPRREPSVVHEMAGELFALVPHYSTALLSDDHVLDL---AKGPDEHFAFPNEWFS 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVL 185
              +     Q         +M P    GD+++ +        G     +     +    L
Sbjct: 118 RGRL--KPEQCILLTALSANMAPAICDGDLVMADRNATALRNGKVYAYQIEEDGLCIARL 175

Query: 186 ISRRGRSIDLMSLNCC---YPVDTVEMSDIE-----WIARILWA 221
               GR +   S N     +P       +IE      +  ++W+
Sbjct: 176 ELVPGRVLIARSENPDTEKFPPKYYFSEEIELVQAGILGEVIWS 219


>gi|89069553|ref|ZP_01156897.1| LexA repressor [Oceanicola granulosus HTCC2516]
 gi|89044888|gb|EAR50978.1| LexA repressor [Oceanicola granulosus HTCC2516]
          Length = 229

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 63/225 (28%), Gaps = 14/225 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +     + E I +  +   + PS    K  LD  S +   R       R         
Sbjct: 1   MLTKKQLDLLEFIHKRLQADGVPPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLAHR 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                I K+  A          +       +     +        +G+      G    G
Sbjct: 61  ARALEIVKLPDALQGRGFTPRVIEGDRPDASPPPAAKP----VEAAGAVELPVMGRIAAG 116

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171
                +     R         +      + +  SM+ +    GD++++      + GD +
Sbjct: 117 VPIAAISEESSRVAVPQGMIGRGPHYALEVRGDSMIDMGINDGDVVVIRETATADDGDVV 176

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +      +   K    + G SI L + N  Y    +  + ++   
Sbjct: 177 VALVEEQEATLKRFRRQ-GSSIALEAANPAYETRILPAAMVKVQG 220


>gi|170768934|ref|ZP_02903387.1| CI protein [Escherichia albertii TW07627]
 gi|170122006|gb|EDS90937.1| CI protein [Escherichia albertii TW07627]
          Length = 250

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 15/211 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            K+  + + +  +   L        +AR   L     +K      E   R     ++ K 
Sbjct: 23  RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 80

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L           D+ +    T+     +   L F      G               + + 
Sbjct: 81  LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 131

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E R     IY+        + +  SM P  + G+ +++    +V  GD + ++   G  +
Sbjct: 132 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTIEGHNM 191

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
            K+L   R       S+N  +   T+    +
Sbjct: 192 IKILGYDRDGEYQFTSINQDHRPITLPYHQV 222


>gi|229824068|ref|ZP_04450137.1| hypothetical protein GCWU000282_01372 [Catonella morbi ATCC 51271]
 gi|229786422|gb|EEP22536.1| hypothetical protein GCWU000282_01372 [Catonella morbi ATCC 51271]
          Length = 205

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 64/229 (27%), Gaps = 40/229 (17%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR 51
           MT+ S K+  I   I    E +   P+   +    GL  TS       + +R G     R
Sbjct: 1   MTTLSTKQLTILSCIHEAIEANGYPPTVREIGAAVGLASTSTVHGHLARLERAGYI--IR 58

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             S     ++                        +E         P        + +   
Sbjct: 59  DASKTRAIELS--------------------PLAQEALGIQPQQIPLLGQVAAGAPILAI 98

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
            +  +   +P     +       ++    + +  SM+ +    GD + +      N GD 
Sbjct: 99  EHATDYYPIPPGLERYE-----PSELFMLEIKGESMVNIGILDGDYITVRRQASANNGDV 153

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    +    + L   N       +    +  + +++
Sbjct: 154 VVAMTEDNEATCKTFFKKSD-HVILRPENDHMDDIILP--QVTILGKVV 199


>gi|85375768|ref|YP_459830.1| prophage MuMc02, S24 family peptidase [Erythrobacter litoralis
           HTCC2594]
 gi|84788851|gb|ABC65033.1| prophage MuMc02, peptidase, family S24 [Erythrobacter litoralis
           HTCC2594]
          Length = 211

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 78/218 (35%), Gaps = 17/218 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + + +DR+ ++  L  S ++R  G + +   +  +    G  R    +    + +   
Sbjct: 2   EHVRDELDRLIQQRRLGYSAISRLIGRNSSYIQQFIKR---GSPRKLDDDDRRVLASFFG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNTVGVPEIRS 125
                   +             EIP+L    S   G         T   ++   +  +  
Sbjct: 59  VDEQ----VLGGPPAPIRDGLIEIPVLNVDASAGFGAIAESETAHTRFGFDERWLAALTR 114

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKV 184
             +   +I            SM P    GD ++++++ +     D + +      +V K 
Sbjct: 115 AKSASLSI------IHVLGDSMEPTLSDGDEVLVDASDEGSRLRDGIYVLRADDALVVKR 168

Query: 185 LISRRGRS-IDLMSLNCCYPVD-TVEMSDIEWIARILW 220
           +  + G   I + S N  YP    V+ S+I+ + R++W
Sbjct: 169 VTLKPGGRKITISSDNAAYPSWDDVDRSEIQVVGRVIW 206


>gi|325289876|ref|YP_004266057.1| SOS-response transcriptional repressor, LexA [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965277|gb|ADY56056.1| SOS-response transcriptional repressor, LexA [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 204

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 59/227 (25%), Gaps = 38/227 (16%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53
           M   S   ++I + I R   +    PS   +    GL   ++ +       +     R P
Sbjct: 1   MEDLSQRQQEILDIIKREIAKKGYPPSVREIGEAVGLTSSSTVHNHLNTLEQKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     ++L  +  +      +                     P          +    N
Sbjct: 61  TKPRAIEVLDGSGNSEMMHNTVH-------------------VPLLGQVTAGQPIMAVEN 101

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             +   +P      +            + Q  SM        D++++      N G+ ++
Sbjct: 102 IEDYFPLPYDMVKSD-------SVFMLRIQGESMIEAGILDHDLVLVRQQNTANNGEIVV 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                     K     +   I L   N           ++  + +++
Sbjct: 155 -AMIEDGATVKRFYKEKD-CIRLQPENSGMEPIY--ARNVTILGKVI 197


>gi|301019520|ref|ZP_07183686.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
 gi|299882171|gb|EFI90382.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
          Length = 229

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 66/211 (31%), Gaps = 15/211 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            K+  + + +  +   L        +AR   L     +K      E   R     ++ K 
Sbjct: 2   RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 59

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L           D+ +    T+     +   L F      G               + + 
Sbjct: 60  LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 110

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E R     IY+        + +  SM P  + G+ +++    +V  GD + ++   G  +
Sbjct: 111 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNM 170

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
            KVL   R       S+N  +   T+    +
Sbjct: 171 IKVLGYDRDGEYQFTSINQDHRPITLPYHQV 201


>gi|315504932|ref|YP_004083819.1| transcriptional repressor, lexa family [Micromonospora sp. L5]
 gi|315411551|gb|ADU09668.1| transcriptional repressor, LexA family [Micromonospora sp. L5]
          Length = 250

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 33/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I E I    ERH   P+   +    GL   S                S     K+L 
Sbjct: 45  QQRILEVIREWVERHGYPPTVREIGAAVGLGSPS----------------SVTHHLKVLQ 88

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLY---FPPSGSGGFFDSGVFPTGNKWNTVGV 120
                          D R +         L      P          +    +    + +
Sbjct: 89  RLGLVRRAAHGPRAVDARPSASATAPDLDLCPGVRVPLVGAIAAGVPILAEEHVEEILAL 148

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P            +        +  SM       GD++++   +    GD +       +
Sbjct: 149 PSELVG-------RGTLFALHVRGDSMIEAGIADGDVIVVRQQVSAENGDIVAALID-DE 200

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K +   R   ++L+  N  YP   +   +   + +++
Sbjct: 201 ATVK-VYRSRDGKVELLPRNPLYP--VIPGDEAVILGKVV 237


>gi|300716279|ref|YP_003741082.1| regulatory protein [Erwinia billingiae Eb661]
 gi|299062115|emb|CAX59231.1| Regulatory protein [Erwinia billingiae Eb661]
          Length = 229

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 20/227 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I ++ +   +T + LA + G D  + ++ +R          S   + K+  A    I
Sbjct: 4   GERIRQLRKAKKMTLNALAMQVGSDVGNLSRLERGVQGY-----SDALLQKLADALAVPI 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L         T +                           G       V ++      
Sbjct: 59  SALFSSGELKN-TGDLYSVSSLTEMGRDDVYRVDVLDVSASAGEGSPAREVVQVIRSIEY 117

Query: 130 IYAIQTQDT---------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +    +                +  SM      GD++ ++ ++    GD + +    GD+
Sbjct: 118 VRKEASVIFGNKPEAIVKLINVRGDSMEGTIEPGDLIFVDVSVPFFDGDGIYVFDFNGDM 177

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA-SQ 223
             K L   +   + ++S N  Y   T+   +   +    R++ + SQ
Sbjct: 178 FVKRLQKVKSE-LYVISDNPRYKEWTISAEEMAMLHVAGRVMLSQSQ 223


>gi|297565617|ref|YP_003684589.1| peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM
           9946]
 gi|296850066|gb|ADH63081.1| Peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM
           9946]
          Length = 217

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 17/207 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           EAI    ++ +++ +  +++ G  P         G  G    PS +++ + LA    T  
Sbjct: 9   EAIKARLKQLDISQAEFSKRVGKSP---------GWAGARFLPSVDTMVRYLAYKEPTTL 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLL--YFPPSGSGGFFDSGVFPTGNK----WNTVGVPEIR 124
           + +            +E  I L       +     +   V   G              + 
Sbjct: 60  ERILDVLQWTPEEFSQETGIQLPGSEITATIPVTRYRIPVVDAGAGPPMWNENAEYITLH 119

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
            P       +++    +    SM P  + GD+++  +   V  G  + +      ++ K 
Sbjct: 120 IPDLK-GKPESELFAVRVGGDSMQPTLKDGDVVVFWTGGAVEPGRIVAVHVHWDGVIVKR 178

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD 211
           L      S  L S N  +P   +  +D
Sbjct: 179 LQRY-NGSWYLYSDNPDHPPVPLTDND 204


>gi|312862721|ref|ZP_07722961.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
           F0396]
 gi|322516899|ref|ZP_08069796.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
 gi|311101581|gb|EFQ59784.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
           F0396]
 gi|322124522|gb|EFX96004.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
          Length = 229

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 16/222 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68
            + +  + E   ++ + +A+  G+  +S+   +    +   +  S    +F +      +
Sbjct: 4   GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSILAELFGVAETYFLS 63

Query: 69  ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +++++         +          +E+E      P      +        G  +   
Sbjct: 64  EHEIVEVYLELNEENRQEALRLTKALLEEQEAEKQKAPVISLYSYKVFERLSAGTGYTY- 122

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +              D        SM P Y  G+++++        G  +      G
Sbjct: 123 -FGDGNYDEVFYDEELDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AVYAVDWDG 180

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +       + L+SLN  Y        +    I +I+
Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221


>gi|9632491|ref|NP_049485.1| repressor protein CI [Enterobacteria phage 933W]
 gi|15800947|ref|NP_286963.1| putative repressor protein CI of bacteriophage BP-933W [Escherichia
           coli O157:H7 EDL933]
 gi|20065916|ref|NP_612999.1| CI protein [Stx2 converting phage I]
 gi|116222055|ref|YP_794110.1| repressor protein CI [Stx2-converting phage 86]
 gi|168748269|ref|ZP_02773291.1| CI protein [Escherichia coli O157:H7 str. EC4113]
 gi|168758909|ref|ZP_02783916.1| CI protein [Escherichia coli O157:H7 str. EC4401]
 gi|168772853|ref|ZP_02797860.1| CI protein [Escherichia coli O157:H7 str. EC4196]
 gi|168780276|ref|ZP_02805283.1| CI protein [Escherichia coli O157:H7 str. EC4076]
 gi|168788900|ref|ZP_02813907.1| CI protein [Escherichia coli O157:H7 str. EC869]
 gi|170783635|ref|YP_001648917.1| repressor protein CI [Enterobacteria phage Min27]
 gi|195938673|ref|ZP_03084055.1| hypothetical protein EscherichcoliO157_19988 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808906|ref|ZP_03251243.1| CI protein [Escherichia coli O157:H7 str. EC4206]
 gi|208811918|ref|ZP_03253247.1| CI protein [Escherichia coli O157:H7 str. EC4045]
 gi|208821053|ref|ZP_03261373.1| CI protein [Escherichia coli O157:H7 str. EC4042]
 gi|209398778|ref|YP_002271815.1| repressor protein CI [Escherichia coli O157:H7 str. EC4115]
 gi|254794287|ref|YP_003079124.1| putative repressor protein CI [Escherichia coli O157:H7 str.
           TW14359]
 gi|260847212|ref|YP_003224990.1| phage repressor protein CI [Escherichia coli O103:H2 str. 12009]
 gi|260867233|ref|YP_003233635.1| putative repressor protein [Escherichia coli O111:H- str. 11128]
 gi|261227993|ref|ZP_05942274.1| putative repressor protein CI [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258715|ref|ZP_05951248.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK966]
 gi|300940488|ref|ZP_07155062.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
 gi|331645938|ref|ZP_08347041.1| putative repressor protein CI of bacteriophage [Escherichia coli
           M605]
 gi|4585402|gb|AAD25430.1|AF125520_25 repressor protein CI [Enterobacteria phage 933W]
 gi|12514300|gb|AAG55574.1|AE005295_14 putative repressor protein CI of bacteriophage BP-933W [Escherichia
           coli O157:H7 str. EDL933]
 gi|19911708|dbj|BAB87968.1| CI protein [Stx2 converting phage I]
 gi|115500865|dbj|BAF34095.1| repressor protein CI [Stx2-converting phage 86]
 gi|145312373|gb|ABP57827.1| repressor Cl [Enterobacteria phage phi24B]
 gi|163955729|gb|ABY49879.1| repressor protein CI [Enterobacteria phage Min27]
 gi|187771028|gb|EDU34872.1| CI protein [Escherichia coli O157:H7 str. EC4196]
 gi|188017192|gb|EDU55314.1| CI protein [Escherichia coli O157:H7 str. EC4113]
 gi|189002185|gb|EDU71171.1| CI protein [Escherichia coli O157:H7 str. EC4076]
 gi|189354375|gb|EDU72794.1| CI protein [Escherichia coli O157:H7 str. EC4401]
 gi|189371399|gb|EDU89815.1| CI protein [Escherichia coli O157:H7 str. EC869]
 gi|208728707|gb|EDZ78308.1| CI protein [Escherichia coli O157:H7 str. EC4206]
 gi|208733195|gb|EDZ81882.1| CI protein [Escherichia coli O157:H7 str. EC4045]
 gi|208741176|gb|EDZ88858.1| CI protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160178|gb|ACI37611.1| repressor protein CI [Escherichia coli O157:H7 str. EC4115]
 gi|254593687|gb|ACT73048.1| putative repressor protein CI [Escherichia coli O157:H7 str.
           TW14359]
 gi|257762359|dbj|BAI33856.1| phage repressor protein CI [Escherichia coli O103:H2 str. 12009]
 gi|257763589|dbj|BAI35084.1| putative repressor protein [Escherichia coli O111:H- str. 11128]
 gi|282935426|gb|ADB03777.1| putative repressor CI [Enterobacteria phage 32deltatox]
 gi|282935429|gb|ADB03779.1| putative repressor CI [Enterobacteria phage 27deltatox]
 gi|282935432|gb|ADB03781.1| putative repressor CI [Enterobacteria phage 22deltatox]
 gi|300454719|gb|EFK18212.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
 gi|315619731|gb|EFV00251.1| helix-turn-helix family protein [Escherichia coli 3431]
 gi|331044690|gb|EGI16817.1| putative repressor protein CI of bacteriophage [Escherichia coli
           M605]
          Length = 235

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 66/211 (31%), Gaps = 15/211 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            K+  + + +  +   L        +AR   L     +K      E   R     ++ K 
Sbjct: 8   RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 65

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L           D+ +    T+     +   L F      G               + + 
Sbjct: 66  LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 116

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E R     IY+        + +  SM P  + G+ +++    +V  GD + ++   G  +
Sbjct: 117 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNM 176

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
            KVL   R       S+N  +   T+    +
Sbjct: 177 IKVLGYDRDGEYQFTSINQDHRPITLPYHQV 207


>gi|324114308|gb|EGC08278.1| peptidase S24 [Escherichia fergusonii B253]
          Length = 235

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 15/211 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            K+  + + +  +   L        +AR   L     +K      E   R     ++ K 
Sbjct: 8   RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 65

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L           D+ +    T+     +   L F      G               + + 
Sbjct: 66  LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 116

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E R     IY+        + +  SM P  + G+ +++    +V  GD + ++   G  +
Sbjct: 117 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTVEGHNM 176

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
            K+L   R       S+N  +   T+    +
Sbjct: 177 IKILGYDRDGEYQFTSINQDHRPITLPYHQV 207


>gi|16803342|ref|NP_464827.1| LexA repressor [Listeria monocytogenes EGD-e]
 gi|224501754|ref|ZP_03670061.1| LexA repressor [Listeria monocytogenes FSL R2-561]
 gi|255028373|ref|ZP_05300324.1| LexA repressor [Listeria monocytogenes LO28]
 gi|25453095|sp|Q8Y7H7|LEXA_LISMO RecName: Full=LexA repressor
 gi|16410718|emb|CAC99380.1| lmo1302 [Listeria monocytogenes EGD-e]
          Length = 204

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            + I+E I    +     PS   +    GL  +S        +EG+    R P+     +
Sbjct: 7   QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E E P +   P          +    N      +
Sbjct: 67  IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIDEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +      A +T     +    SM+      GD +I+        G+ ++      +
Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQESSAINGEIVVAMTDENE 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +  + +++
Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPILLNN--VTILGKVI 197


>gi|78045221|ref|YP_360210.1| LexA repressor [Carboxydothermus hydrogenoformans Z-2901]
 gi|123743176|sp|Q3ACC4|LEXA_CARHZ RecName: Full=LexA repressor
 gi|77997336|gb|ABB16235.1| LexA repressor [Carboxydothermus hydrogenoformans Z-2901]
          Length = 204

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 67/225 (29%), Gaps = 41/225 (18%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTE 56
            SH++  I   I +    +   P+   + +  GL   S   +  K    +G   R P+  
Sbjct: 6   LSHQEKKIISFIKQYLNENGYPPTIREICQGVGLSSPSTVHHHLKNLESKGYLQRNPTKP 65

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +++                        EK    L   P               N   
Sbjct: 66  RALELV-----------------------AEKAPEELLSIPLLGNVAAGYPTLAIENAEE 102

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            + +P+   P       + +    + +  SM       GD++I+        GD ++   
Sbjct: 103 EMQIPKSLFP-------EKELFALRIKGDSMIEEGILPGDVIIVKKQEVAENGDIVV-AY 154

Query: 176 RTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K          I L+  N  Y    +   + + + +++
Sbjct: 155 LEGEVTVKKFWKDSVNGVIKLIPANSKYEPIIINR-ETKILGKVI 198


>gi|332977088|gb|EGK13892.1| LexA repressor [Desmospora sp. 8437]
          Length = 211

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 65/232 (28%), Gaps = 41/232 (17%)

Query: 1   MTSFSH-----KKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEG 48
           M+  S      + I + I +   +    PS   +    GL  +S      N+ ++ G+  
Sbjct: 1   MSRLSQLSSRQQAILDYIKQEVRKKGYPPSVREIGEAVGLASSSTVHGHLNRLEKKGLI- 59

Query: 49  RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
             R P+     ++L   ++ I  L                        P          +
Sbjct: 60  -RRDPTKPRAIEVLDQDHDLIPDLSSQTMM-----------------VPLVGKVTAGEPI 101

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
               N      VP      +              +  SM+      GD +++      + 
Sbjct: 102 TAVENVEEYFPVPRRMVSPDD------SAFILSVRGNSMINAGVMDGDYVVVRQQKTADN 155

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K     +   I L   N       +   ++  + +++
Sbjct: 156 GDMIVAMTPENEATVKRFYKEKN-MIRLQPENDNMDPIWLP--EVTILGKVI 204


>gi|256369570|ref|YP_003107080.1| LexA repressor [Brucella microti CCM 4915]
 gi|255999732|gb|ACU48131.1| LexA repressor [Brucella microti CCM 4915]
          Length = 240

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 57/235 (24%), Gaps = 17/235 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I    +  ++ PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLLFIHERLKETSIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------- 105
            + L            L           E  +  +                         
Sbjct: 61  ARALEVLRLPDSIAPGLSPQKKFAPSVIEGSLGKVASVQPVRPAPAPQNSEAPATVSVPV 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
            G    G   + +                 +    + +  SM+      GD +I+     
Sbjct: 121 MGRIAAGVPISAIQNQTHMLSLPPEMIGAGEHYALEVKGDSMIDAGIFDGDTVIIKRGDT 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N G+ ++      +   K    +   SI L + N  Y         +    +++
Sbjct: 181 ANPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVHVQGKLV 234


>gi|237745238|ref|ZP_04575719.1| phage transcriptional repressor [Fusobacterium sp. 7_1]
 gi|229432467|gb|EEO42679.1| phage transcriptional repressor [Fusobacterium sp. 7_1]
          Length = 204

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 21/214 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I  + +++ +T   LA    +   S    +        R    + + KI      
Sbjct: 3   NIGEKIIFLRKKNKITQDELADALEISKQSILNYE-----TEKRQIPIDVLSKIATFFKI 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            I       + +    +        +    S   G +           + + V +  +  
Sbjct: 58  PIEAFFSDNYDNFEEIKNNNTIKIPIISKVSAGLGVYGRN-----EILDWLEVSKSIAK- 111

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                  +          SM P     D++++     ++ G+  +      D+  K    
Sbjct: 112 -------SATFATFIDGDSMEPKIHDDDLVLVQEVSMLDSGEIGIFFLN-DDVYCKKFQY 163

Query: 188 RR-GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
               + I L S+N  Y    V    +   I R++
Sbjct: 164 NEFTKEIILKSINPKYKPKEVTSDDEFRIIGRVV 197


>gi|226324976|ref|ZP_03800494.1| hypothetical protein COPCOM_02768 [Coprococcus comes ATCC 27758]
 gi|225206324|gb|EEG88678.1| hypothetical protein COPCOM_02768 [Coprococcus comes ATCC 27758]
          Length = 206

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 56/220 (25%), Gaps = 36/220 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I     +    P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQEEILEYIKSQILQRGFPPAVREICDAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL  +     + +                       P          V    N  +   
Sbjct: 69  EILDDSFNLTRREMVQ--------------------IPIVGHVAAGEPVLAQENIEDYYP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           VP          +   +    K Q  SM+      GD +I+        GD ++      
Sbjct: 109 VPTEYI------SSNKELFMLKVQGESMINAGILDGDYVIVEKQATAENGDMVVALID-D 161

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
               K         I L   N       +   D+  + ++
Sbjct: 162 GATVKTFYREE-GVIRLQPENDAMEPFIL--EDVTILGKV 198


>gi|323140532|ref|ZP_08075459.1| repressor LexA [Phascolarctobacterium sp. YIT 12067]
 gi|322414984|gb|EFY05776.1| repressor LexA [Phascolarctobacterium sp. YIT 12067]
          Length = 227

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 55/222 (24%), Gaps = 28/222 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M S   + I + +          P+   +    GL  ++                S  + 
Sbjct: 25  MLSERQRNILKFVRTFINHKGYPPAVREIGAAVGLSSSA----------------SVHNH 68

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K L                +  +     +   L+  P           +    N   T 
Sbjct: 69  LKKLQEYGFIQRDAAKPRALELMSESDAWRNKLLVPVP-LVGKVTAGVPILAVENIEETY 127

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P                        SM+       D +I       N GD ++     
Sbjct: 128 PIPRDLIG------CDDDVFMLSVCGDSMINAGILDHDYIIARKQNFANNGDIVVALIDG 181

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K       RS+ L   N  Y    V   +I+ + +++
Sbjct: 182 EETTVKRYFREL-RSVRLQPENDKYEPI-VGSDNIKVLGKVI 221


>gi|300907046|ref|ZP_07124714.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|301304048|ref|ZP_07210165.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|300401193|gb|EFJ84731.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300840655|gb|EFK68415.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|315257709|gb|EFU37677.1| peptidase S24-like domain protein [Escherichia coli MS 85-1]
          Length = 237

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 66  --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GYKPSFPDGMLILVDPEQAVEPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|94967612|ref|YP_589660.1| LexA repressor [Candidatus Koribacter versatilis Ellin345]
 gi|123256813|sp|Q1IU64|LEXA_ACIBL RecName: Full=LexA repressor
 gi|94549662|gb|ABF39586.1| SOS-response transcriptional repressor, LexA [Candidatus Koribacter
           versatilis Ellin345]
          Length = 210

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 39/231 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDP-TSFNK------SKRFGIEGR 49
           M + +   +++++ +    + H  +PS   +A   GL    + +K      SK       
Sbjct: 1   MVALTRRQREMYDFLCSFTDSHGYSPSFEEIAEGMGLSSLATVHKHIGNLESKGLLKRDY 60

Query: 50  NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           NR  S E +                          K + +  +       + G    G  
Sbjct: 61  NRARSIEVLR------------------------PKGQLKKSMAAAAAVATAGLPFLGRI 96

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCG 168
             G     +  PE  S   G +    +    +    SM       GD +++        G
Sbjct: 97  AAGQPIEAIENPETIS--LGDFTGSKEVFVLQVSGESMQDEHIVDGDYVLVERINTARDG 154

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + ++      D   K +    G ++ L   N       V    ++   R++
Sbjct: 155 EIVVALVENSDTTLKRIYR-EGETVRLQPSNAKMQPIRVPAGSVQVQGRVI 204


>gi|306818499|ref|ZP_07452222.1| repressor LexA [Mobiluncus mulieris ATCC 35239]
 gi|304648672|gb|EFM45974.1| repressor LexA [Mobiluncus mulieris ATCC 35239]
          Length = 278

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 64/242 (26%), Gaps = 32/242 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS------KRFGIEGRNRWPSTES 57
            +++ + + R++   +  PS   LA   GL   S  +       ++  +      P    
Sbjct: 35  QREVLDTLYRLSRELSYPPSVRELASAMGLSSPSSVQHHLEVLVEKGYLRRVPNQPRALE 94

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--- 114
             K+   T     ++        +   + ++         +           P G     
Sbjct: 95  FVKLPEGTPAATTEMAPHAPEAPKVYSETQRNNQNNSSLKTTENISATIHTIPIGVADTA 154

Query: 115 ----------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
                                + E       ++    +    +    SM       GD +
Sbjct: 155 DSNAIPLVGRIAAGIPITAEELVEDTFMLPRLFTGAGELFMLEVNGESMRDAAIMNGDWV 214

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           ++ +  +   GD +      G+   K     +   I L+  N  +            + +
Sbjct: 215 VVRAQNEARNGDIV-AAMLEGEATVKEFSRDK-GHIWLLPHNPSFEPI--PGDGATILGK 270

Query: 218 IL 219
           ++
Sbjct: 271 VV 272


>gi|283795791|ref|ZP_06344944.1| toxin-antitoxin system, antitoxin component, Xre family
           [Clostridium sp. M62/1]
 gi|291076423|gb|EFE13787.1| toxin-antitoxin system, antitoxin component, Xre family
           [Clostridium sp. M62/1]
          Length = 244

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           I E I    ++  L    LA +       +   + +  +R   E          + +IL 
Sbjct: 4   IGEIISSYRKKKGLLQQDLADELAKEGVTISYKAISNWERNLAE--PSVTIFYKVCRILG 61

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108
            TN         P     +   + +E  + Y     + G +                   
Sbjct: 62  ITNMYEAYFGVNPADPLSSLTDEGREKAMDYIHLLHASGMYEKQTAKIIPFRSIDIFENA 121

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              G     V  P+     +     +      +    SM P +  G I  +     V  G
Sbjct: 122 VSAGTGNFLVDGPKETVCIDESILPEDTTFGVRISGDSMEPEFSDGQIAWVLQQESVANG 181

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
           +  +     G+   K L + +   I L+SLN  Y    V   D ++   ++L
Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYAPIPVGEDDRLDIFGKVL 231


>gi|319649384|ref|ZP_08003542.1| LexA repressor [Bacillus sp. 2_A_57_CT2]
 gi|317399018|gb|EFV79698.1| LexA repressor [Bacillus sp. 2_A_57_CT2]
          Length = 207

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 59/227 (25%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           M   S   + I E I    +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MVKLSKRQQDILEFIKEEVKLRGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL     +    +                       P          +    N
Sbjct: 61  TKPRAIEILDLDESSHIPKVSAVN------------------VPIVGKVTAGQPITAIEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +PE  +P              +    SM       GD +I+      N GD ++
Sbjct: 103 VEEYFPLPERMAP------ADEHVFMLEIMGESMIEAGILDGDYVIVKQQSTANNGDIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +   I L   N       +    +  + +++
Sbjct: 157 AMTEEDEATVKRFFKEKD-YIRLQPENSTMEPIILRN--VSILGKVI 200


>gi|218898784|ref|YP_002447195.1| LexA repressor [Bacillus cereus G9842]
 gi|228902190|ref|ZP_04066353.1| LexA repressor [Bacillus thuringiensis IBL 4222]
 gi|228966592|ref|ZP_04127643.1| LexA repressor [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218544192|gb|ACK96586.1| LexA repressor [Bacillus cereus G9842]
 gi|228793114|gb|EEM40666.1| LexA repressor [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228857470|gb|EEN01967.1| LexA repressor [Bacillus thuringiensis IBL 4222]
          Length = 223

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 18  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 78  TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P              Q    +    SM       GD++++        G+ ++ 
Sbjct: 120 EEHFPLPASIVSGAD------QVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 216


>gi|118618684|ref|YP_907016.1| LexA repressor [Mycobacterium ulcerans Agy99]
 gi|166224637|sp|A0PT76|LEXA_MYCUA RecName: Full=LexA repressor
 gi|118570794|gb|ABL05545.1| repressor LexA [Mycobacterium ulcerans Agy99]
          Length = 244

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 27/226 (11%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPS 54
           T+ + ++  I   I          PS   +    GL  TS   ++ +    +G   R P+
Sbjct: 32  TALTERQRTILNVIRTSVNDRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPN 91

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                 +            D   +   T       +P   F P          +      
Sbjct: 92  RPRAVDV--------RGADDTVTAAPVTDVAGSDALPEPTFVPVLGRIAAGGPILAEEAV 143

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P            Q      K    SM       GD +++      + GD +  
Sbjct: 144 EDVFPLPRELVG-------QGTLFLLKVVGESMVEAAICDGDWVVVRQQNVADNGDIVAA 196

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G+   K      G  I LM  N  +       +D   + +++
Sbjct: 197 MID-GEATVKTFKR-AGGQIWLMPHNPAFDPI--PGNDATVLGKVV 238


>gi|295091860|emb|CBK77967.1| SOS-response transcriptional repressor, LexA [Clostridium cf.
           saccharolyticum K10]
          Length = 205

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 52/218 (23%), Gaps = 31/218 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I E I     +    P+   +     L  TS                S  S  + L
Sbjct: 9   KQQEILEYIKETILKKGYPPAVREICEAVKLKSTS----------------SVHSHLETL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P         + +    N      +P 
Sbjct: 53  EKNGYIRRDPTKPRTIEIIDDCFNLARREVVNVP-LIGTVAAGTPLLAQENIETYFPIPS 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P+        +    K +  SM       GD +++        G+ ++         
Sbjct: 112 ELLPN-------KEIFMLKVKGDSMIEAGIFNGDQILVEKTNTAENGEIVVALLD-DSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V   +++ + +++
Sbjct: 164 VKRFYR-EDGHYRLQPENASMEPIFV--DEVQILGKVI 198


>gi|260459230|ref|ZP_05807485.1| SOS-response transcriptional repressor, LexA [Mesorhizobium
           opportunistum WSM2075]
 gi|259034784|gb|EEW36040.1| SOS-response transcriptional repressor, LexA [Mesorhizobium
           opportunistum WSM2075]
          Length = 250

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 64/245 (26%), Gaps = 27/245 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +    ++   I    +   + PS    K  LD  S +   R       R      P+ 
Sbjct: 1   MLTRKQHELLMFIHERLKESGIPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
               ++L   +     L           +    +  L             S     GN  
Sbjct: 61  ARALEVLRLPDSIAPGLNAAKKFSPSVIQGSLGQGGLGQGSLGRQIKPAPSRFAAAGNDD 120

Query: 116 NTVGVPEIRSPHNGIYAIQ--------------------TQDTRHKTQDTSM-LPLYRKG 154
           + V    I         +                      +    + +  SM       G
Sbjct: 121 DAVPAVSIPVMGRIAAGVPIDAIQHQTHTISVPPDMIMGGEHYALEVKGDSMIEAGIFDG 180

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           D +I+ +A   + G+ ++      +   K    +   SI L + N  Y         ++ 
Sbjct: 181 DTVIIRNADTASPGEIVVALVDEEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKV 239

Query: 215 IARIL 219
             +++
Sbjct: 240 QGKLV 244


>gi|326384481|ref|ZP_08206161.1| LexA repressor [Gordonia neofelifaecis NRRL B-59395]
 gi|326196826|gb|EGD54020.1| LexA repressor [Gordonia neofelifaecis NRRL B-59395]
          Length = 239

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 54/223 (24%), Gaps = 23/223 (10%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
            S + ++  + E I +        PS   +    GL  TS    +        R      
Sbjct: 29  ASLTQRQREVLEVIRKSVRERGYPPSIREIGEAVGLTSTSSVAHQ-------LRTLERRG 81

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + K        +    D         E     +P   F P          +         
Sbjct: 82  LLKRDPHRPRAVNVRDDQRTPPAGAAEVDGDALPTPTFVPVLGRIAAGGPILAEQAVEEV 141

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P                   +    SM+      GD +++        GD +     
Sbjct: 142 FPMPRELVG-------DGSLFMLRVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID 194

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K         + LM  N  +        D   + +++
Sbjct: 195 -GEATVKTFKRV-DGHVWLMPHNEHFEPI--PGDDAAVLGKVV 233


>gi|229061262|ref|ZP_04198612.1| LexA repressor [Bacillus cereus AH603]
 gi|228718133|gb|EEL69773.1| LexA repressor [Bacillus cereus AH603]
          Length = 213

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 60/226 (26%), Gaps = 36/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 10  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 69

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +   +   +                     P          +    + 
Sbjct: 70  TK--PRAIEILGDNRTETQSVIQ------------------VPIVGKVTAGLPITAVESV 109

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 110 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 163

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 164 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 206


>gi|210621011|ref|ZP_03292396.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275]
 gi|210154995|gb|EEA86001.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275]
          Length = 214

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 79/215 (36%), Gaps = 20/215 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + +  + + +  T   + +   +  + +   ++   +     P  E + K+ +  + 
Sbjct: 11  NLQDRLKSLRKENKYTQEDIGKFLNMTTSGYGYYEQGKNK-----PPLEILQKLASLYSV 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++  LL       +   K +  + L       +G    +     G+++            
Sbjct: 66  SLDYLLGNDDVRLKNEIKIDNVVKLPVLGSVRAGTGGWAIEEVIGHEY-----------A 114

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             + A  +     K +  SM P   +GD+ ++     V  GD  ++     + V K +I 
Sbjct: 115 FNLCADTSDYYYLKVKGDSMEPRISEGDLALVKKQSDVESGDLAIVLINGDEGVIKKVIK 174

Query: 188 RRGRSIDLMSLNCCYPVDTVE---MSDIEWIARIL 219
           R    ++L S N  YPV       + D++ I +++
Sbjct: 175 R-DDCLELHSFNAYYPVRVFSGQALQDVKIIGKVI 208


>gi|253582663|ref|ZP_04859884.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835533|gb|EES64073.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 259

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 14/223 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               K+  + ++   +++      ++R+ G+   +    K        R P  + I K +
Sbjct: 1   MEKKKEFSKYLENFMKKNGYNLEQISRETGVPVATIGHYKTG-----RRTPKNDFIDKFV 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---GGFFDSGVFPTGNKWNTVG 119
           +  N    +  ++  +       +  +  +                      G    T+ 
Sbjct: 56  SGFNLNSQEKKEITMAIAIDRTPEVIKDNIFDLKNVKPIKLMEVPLFSSVSAGLGRETIA 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP---R 176
            P        I            Q  SM      G I+++N+ +    G+  +       
Sbjct: 116 EPIDFISIPKI--SGNNIVAILVQGDSMEDTILDGSIVVVNTELMPEIGEIGVFLTKGSD 173

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             D + K L  +      L S N  Y    +E SDI    +++
Sbjct: 174 HADGLVKRLKYK-NGEYVLESDNKEYDDLRIENSDITAYGKVI 215


>gi|329766961|ref|ZP_08258489.1| hypothetical protein HMPREF0428_00186 [Gemella haemolysans M341]
 gi|328837686|gb|EGF87311.1| hypothetical protein HMPREF0428_00186 [Gemella haemolysans M341]
          Length = 210

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 57/208 (27%), Gaps = 15/208 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            +  +  N+  + LAR   + P+S +   +         P  + +  I    +     L+
Sbjct: 10  KKCLKEKNIKQAELARSTKITPSSISDWSKGKYT-----PKRDKLQIIADYLSVNPAWLM 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                    +          Y           +     G+    V + E    H  I   
Sbjct: 65  GESDIMDAESLDNSLNSNNDYLDDVSKLPILGTIC--AGDG---VYIEEEYDEHIFIDQG 119

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191
              D   + +  SM       GD++ +     V  G    +      +   K +  +   
Sbjct: 120 MRADFALRVKGDSMIEAGIFDGDLVFIRQQSSVRNGKIAAVRLTEWNEASLKKIFVKNDN 179

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            I L   N  Y        ++E I   +
Sbjct: 180 VI-LYPCNPDYEPIV--TRNVEIIGECV 204


>gi|253999361|ref|YP_003051424.1| putative phage repressor [Methylovorus sp. SIP3-4]
 gi|253986040|gb|ACT50897.1| putative phage repressor [Methylovorus sp. SIP3-4]
          Length = 226

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 14/219 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            ++ + I    E    T + LA   G+   + +K      +      S E+I K+  A  
Sbjct: 2   NEVGKLIKEALEHQGKTQAWLAEFCGVSNNAVSKWINGSGQ-----ISRENIRKVANALG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WNTVG 119
               +LL+    D  T    ++        P          VF  G          +   
Sbjct: 57  LRASELLNTDTDDSITVGFAQEFHFPENSYPVKPEKKGYPPVFGKGMGGLPDRIFTDEGR 116

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           V      +  + +        + +  SM P Y  G+  ++         D +LIK  TG+
Sbjct: 117 VSNGHDEYAEVLSGDDNAFVIRVEGNSMFPKYAHGEYALVEPNTVPEIEDDVLIKLSTGE 176

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           ++ K LISRRG  I L S N        + S+I W+  +
Sbjct: 177 VMLKRLISRRGG-IHLSSYNES-GTYDFQDSEIVWMYYV 213


>gi|229820919|ref|YP_002882445.1| SOS-response transcriptional repressor, LexA [Beutenbergia cavernae
           DSM 12333]
 gi|229566832|gb|ACQ80683.1| SOS-response transcriptional repressor, LexA [Beutenbergia cavernae
           DSM 12333]
          Length = 219

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 27/219 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I    E     PS   +    GL+  S   ++      +G  R          
Sbjct: 17  QRRVLETIRASVEERGYPPSMREIGEAVGLNSPSSVMHQLTVLERKGYLR---------- 66

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                      +  P    R     +       + P          +       +   +P
Sbjct: 67  -RDPRRPRAMEIVSPDDQAREERPYDVPTTPPSYVPLVGRIAAGGPILAEQVVEDVFPLP 125

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                              K    SM       GD +++        G+ +      G+ 
Sbjct: 126 RQLVG-------DGDLFLLKVVGDSMIEAAICDGDWVVVRQQPVAENGEIVAAMID-GEA 177

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L  +    + L+  N  Y       +D + + R++
Sbjct: 178 TVKTL-KQSADEVWLLPANASYAPI--PGNDAQILGRVV 213


>gi|307610924|emb|CBX00541.1| phage repressor [Legionella pneumophila 130b]
          Length = 229

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 16/225 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M     +KI + I    +   LT   LA   G L  +  N  +R      +R P    I 
Sbjct: 1   MDMNIKEKIGQRIMNERKAKGLTRKALAELTGELKTSRINNYERG-----DRTPGPTEIK 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-V 118
            +  A   +   L+ L  +      K      L+            + +    +  ++ V
Sbjct: 56  LLADALEVSASYLMCLTDNREGKMTKSLGMGALIPVLDYKQAADPVTYIQKIKDDIDSKV 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRT 177
               +         I       + +D SM+P +R  D++I++       GD ++      
Sbjct: 116 EFVPVSKAVGE--KIGKNAFALQVRDESMMPEFRVDDVIIVDPDTCPKPGDFVIALVEGE 173

Query: 178 GDIVAKVLI----SRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216
            +++ +       S++ +  +L++LN  +    V+ S   +  + 
Sbjct: 174 NEVIVRKYRQLSLSKKEQEFELVALNNDWADLRVDASTFKVLIVG 218


>gi|238925757|ref|YP_002939274.1| LexA repressor [Eubacterium rectale ATCC 33656]
 gi|238877433|gb|ACR77140.1| LexA repressor [Eubacterium rectale ATCC 33656]
          Length = 244

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 25/232 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           I E I    ++  L    LA +       +   + +  +R   E          + +IL 
Sbjct: 4   IGEIISTYRKKKGLLQQDLADELAKEGITISYKAISNWERNLAE--PSVTIFYKVCRILG 61

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF---------------DSGV 108
            TN         P     +   + +E  + Y     + G +                   
Sbjct: 62  ITNMYEAYFGVNPADPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENA 121

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              G     V  P+     +     +      +    SM P +  G I  +     V  G
Sbjct: 122 VSAGTGNFLVDGPKETVHIDESILPEDTTFGVRISGDSMEPEFHDGQIAWVLQQESVANG 181

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  +     G+   K L + +   I L+SLN  Y    V E   ++   ++L
Sbjct: 182 EIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYTPIKVGENDRLDIFGKVL 231


>gi|254744713|ref|ZP_05202391.1| LexA repressor [Bacillus anthracis str. Kruger B]
          Length = 223

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 18  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 77

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 78  TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 120 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 173

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +I+
Sbjct: 174 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKII 216


>gi|19919304|gb|AAM08234.1| putative phage repressor [Legionella pneumophila]
 gi|307608914|emb|CBW98314.1| putative phage repressor [Legionella pneumophila 130b]
          Length = 227

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 17/225 (7%)

Query: 1   MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT     K+I + I    +   LT   L   AG L  T     ++       R P  E I
Sbjct: 1   MTELNIKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGV-----RTPGPEEI 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +  A + +   L+ L  +      K   +       P             TG    + 
Sbjct: 56  KLLAQALDVSPAYLMCLSDTQLHREAKNPSQ-----LIPLLDYRQACEAKLHTGA-EISG 109

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRT 177
               I         + T     K  D SM+P  R  D+L++   +    GD + +     
Sbjct: 110 DKVFISVSTALQPELSTDAFALKITDDSMMPEIRINDVLVIEPCVLPEPGDFVAVKISGK 169

Query: 178 GDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            + +              +L++LN  +P   V    D++ I  ++
Sbjct: 170 PEAIICQYKKLSYTSSEFELLTLNDNWPNIKVSDDIDVKIIGVLV 214


>gi|309389303|gb|ADO77183.1| SOS-response transcriptional repressor, LexA [Halanaerobium
           praevalens DSM 2228]
          Length = 207

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 56/223 (25%), Gaps = 29/223 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   S   K I + I    +     PS   + +  GL   +   S              +
Sbjct: 1   MDDLSKRQKSILQFIIDQIKSKGYPPSVREIGKAVGLKSPASVHSH------------LK 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K+     +           +     K EKE+  +      + G          N  +
Sbjct: 49  TLEKLNYLRRDPSKPRAIEVIYNSEPEAKNEKEMINIPVVGKVTAGSPI---LAEENIED 105

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
              +P                   K    SM       GD +I          D ++   
Sbjct: 106 YFPLPLSYLKVGN-----NDLFMLKVSGNSMVEAGIHDGDYVIAEKQNYAKNKDIVIAL- 159

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              +   K         I L   N  Y        +I+ + ++
Sbjct: 160 LEEEATVKRFFKEED-HIRLQPENPAYEPII--AKNIKILGKV 199


>gi|241889873|ref|ZP_04777171.1| putative prophage LambdaCh01, repressor protein [Gemella
           haemolysans ATCC 10379]
 gi|241863495|gb|EER67879.1| putative prophage LambdaCh01, repressor protein [Gemella
           haemolysans ATCC 10379]
          Length = 210

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 15/208 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            +  +  N+  + LAR   + P+S +   +         P  + +  +    +     L+
Sbjct: 10  KQCLKEKNIKQAELARSTNITPSSISDWSKGKYT-----PKRDKLIILAEYLSVNPDWLV 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
               +    T K++      +           +     G+    V + E    H  I   
Sbjct: 65  GDSDTMDIETPKEKSFNTEDFSDDVSKLPILGTIC--AGDG---VYIEEEYDEHIFIDQG 119

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191
              D   + +  SM       GD++ +     V  G    +      +   K +  +   
Sbjct: 120 MRADFALRVKGDSMIEAGIFDGDLVFIRQQSSVRNGKIAAVRLTDWNEASLKKIFVKNDN 179

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            I L   N  Y        ++E I   +
Sbjct: 180 VI-LYPCNPDYEPIV--TRNVEIIGECV 204


>gi|117924798|ref|YP_865415.1| phage lambda repressor protein. serine peptidase. MEROPS family S24
           [Magnetococcus sp. MC-1]
 gi|117608554|gb|ABK44009.1| phage repressor protein, Serine peptidase, MEROPS family S24
           [Magnetococcus sp. MC-1]
          Length = 220

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 9/215 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IFKILAAT 65
           + + I    E    T   LA +  +  T+ +K +        R  +      +  I   T
Sbjct: 3   LKDRIRTAREYAGFTQKELADRVDISQTAIHKLECGRSRSSRRTVAIALACGVNPIWLET 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            E    L     +   +          + F  +    + D+  +P  +   ++       
Sbjct: 63  GEGDMILGGSRGAHQASDIGAPYYTGAMDFLQAPVISWGDAKFWP--DDKESMETDTPLG 120

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKV 184
                +    +    K Q  SM   + +GDI++++  ++      +++  P   D+  K 
Sbjct: 121 HAPVPHFASNRSFALKVQGDSMSTEFSEGDIIVVDPEMEPKNNHYVVVFLPMENDVTFKQ 180

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           L    GR   L  +N  YP   + M +   I  ++
Sbjct: 181 LAVDGGRRY-LKPVNPRYP--IMPMEEAAKICGVV 212


>gi|183982006|ref|YP_001850297.1| repressor LexA [Mycobacterium marinum M]
 gi|229621223|sp|B2HLX8|LEXA_MYCMM RecName: Full=LexA repressor
 gi|183175332|gb|ACC40442.1| repressor LexA [Mycobacterium marinum M]
          Length = 244

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 27/226 (11%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPS 54
           T+ + ++  I   I          PS   +    GL  TS   ++ +    +G   R P+
Sbjct: 32  TALTERQRTILNVIRTSVNDRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLRRDPN 91

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                 +            D   +   T       +P   F P          +      
Sbjct: 92  RPRAVDV--------RGADDTVTAAPVTDVAGSDALPEPTFVPVLGRIAAGGPILAEEAV 143

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P            Q      K    SM       GD +++      + GD +  
Sbjct: 144 EDVFPLPRELVG-------QGTLFLLKVVGESMIEAAICDGDWVVVRQQNVADNGDIVAA 196

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G+   K      G  I LM  N  +       +D   + +++
Sbjct: 197 MID-GEATVKTFKR-AGGQIWLMPHNPAFDPI--PGNDATVLGKVV 238


>gi|229086261|ref|ZP_04218446.1| LexA repressor [Bacillus cereus Rock3-44]
 gi|228697053|gb|EEL49853.1| LexA repressor [Bacillus cereus Rock3-44]
          Length = 215

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 54/225 (24%), Gaps = 32/225 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +   + I + I    +     PS   + +  GL   ++ +                
Sbjct: 10  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSR----------- 58

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L                +     K E E   +   P          +    +  
Sbjct: 59  ------LEEKGYIRRDPTKPRAIEILGEVKIETETQSVIQVPIVGKVTAGLPITAVESVE 112

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
               +P          A   Q    +    SM       GD++++        G+ ++  
Sbjct: 113 EHFPLPASVV------AGADQVFMLRISGDSMIEAGILDGDLVVVRQQHSAYNGEIVVAL 166

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K     +     L   N       ++   +  I +++
Sbjct: 167 TEDNEATVKRFYKEKD-HFRLQPENSSLEPIILDK--VSVIGKVI 208


>gi|254504047|ref|ZP_05116198.1| LexA repressor [Labrenzia alexandrii DFL-11]
 gi|222440118|gb|EEE46797.1| LexA repressor [Labrenzia alexandrii DFL-11]
          Length = 227

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 14/221 (6%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESIFK--------- 60
            I    +   + PS    K  LD  S +   R       R       +  +         
Sbjct: 2   FIHERLKETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNRARAMEVVRLPD 61

Query: 61  -ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            I         +    P     +  K          P + S      G    G     + 
Sbjct: 62  SIAPGLGAPRPRGSFSPEVIEGSLGKPAPAPAPAPEPVAASTEIPVMGRIAAGVPIEAIQ 121

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                         + +    + +  SM       GD +++      + GD ++      
Sbjct: 122 THSHSISVPPELLGKGEHYALEVRGDSMIEAGILDGDTVLIRRTESADSGDIVVALVDDE 181

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K L  ++G SI L + N  Y         +    +++
Sbjct: 182 EATLKRL-RKKGPSIALEAANPAYETRIFGPGRVRVQGKLV 221


>gi|224476467|ref|YP_002634073.1| LexA repressor [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254809107|sp|B9DP69|LEXA_STACT RecName: Full=LexA repressor
 gi|222421074|emb|CAL27888.1| DNA damage-inducible repressor LexA (DinR) [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 207

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 59/226 (26%), Gaps = 32/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           MT  +    +I+E I  +       PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MTELTKRQSEIYEYIKTVVHTKGYPPSVREIGEAVGLASSSTVHGHLSRLESKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+                            ++  E+      P          +    N 
Sbjct: 61  TK-----------------PRAIEIVSDQLEENAEMEGTIHVPVIGKVTAGVPITAVENI 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +PE  +  +      +          SM       GD +I+ S      GD ++ 
Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       +    +  + +++
Sbjct: 159 MTEDDEATVKRFYKEK-HRYRLQPENSTMDPIYL--EQVTVLGKVV 201


>gi|71276700|ref|ZP_00652969.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Dixon]
 gi|71162492|gb|EAO12225.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Dixon]
          Length = 224

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 18/214 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   + +  E  N+  S  A+K G+  ++  + +R G++      +T  +  I  A  
Sbjct: 2   ETIGSRVRKEREAQNINRSDFAKKTGIGYSTIAELERGGMQ------TTTKLRLIADALG 55

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++  L               K I                     G     +  P++   
Sbjct: 56  VSLRWLETGKGEKI-EATTATKSIATEKISQHYIRVEHLDAEAGMGESRVNLDYPDVIRS 114

Query: 127 HN----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                       G    + +         SM+P+ + G+++++++ IQ   GD + +   
Sbjct: 115 VEYTEAFIRSLIGFVPQKGRLKLITGCGDSMIPVIQPGEVVLVDTGIQSFDGDGIYLINI 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
                 K L   RG ++ ++S N  Y        
Sbjct: 175 GHGQQIKALQ-DRGDAVYVVSANPLYQPIPFPSE 207


>gi|319408560|emb|CBI82213.1| SOS response regulator lexA protein [Bartonella schoenbuchensis R1]
          Length = 237

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 63/232 (27%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGL---DPTSFNKS-----KRFGIEGRN-R 51
           M +    ++   I    +   + PS    +  L     +S ++      +R  I     R
Sbjct: 1   MLTCKQYELLLFIHNHMKETGVPPSFDEMRNALELASKSSIHRLITALEERGFIRRLPNR 60

Query: 52  WPSTESIF---KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
             + E I    KI    +        +   + + T +    +         +      G 
Sbjct: 61  ARAVEVIRLPDKITFDLSSARKIFPSMVEKNKKKTFQDLDNLDHSDTKNKQNITIPIMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G   + +                 +    + +  SM        D +I+        
Sbjct: 121 IAAGVPISAIQQQTNTLSLPPDMIGLGEYYALEVKGDSMVEAGIIDRDTIIVKRQNTATQ 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++      +   K    +   SI L + N  Y     +   +    R++
Sbjct: 181 GEIIVALIDKQEATLKRYRRKGA-SIALEAANPHYETRIYKPERVHIQGRLV 231


>gi|237707939|ref|ZP_04538420.1| lambda repressor [Bacteroides sp. 9_1_42FAA]
 gi|229458045|gb|EEO63766.1| lambda repressor [Bacteroides sp. 9_1_42FAA]
          Length = 225

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 65/224 (29%), Gaps = 9/224 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKI 61
             +H  + + + +      L+   +A K G+  +                 +    I K+
Sbjct: 1   MRTHVALKQFMKKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLTKILKV 60

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTGNKWNTVG 119
                            +  + +   +             G F      F  G+    V 
Sbjct: 61  SVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKGDAERWVS 120

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
             +  S       ++       T      P +  G +++++    V  GD  + +    +
Sbjct: 121 TTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDE 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
              K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 178 FTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 218


>gi|254992884|ref|ZP_05275074.1| LexA repressor [Listeria monocytogenes FSL J2-064]
          Length = 204

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            + I+E I    +     PS   +    GL  +S        +EG+    R P+     +
Sbjct: 7   QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E E P +   P          +    N      +
Sbjct: 67  IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIDEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +               +    SM+      GD +I+        G+ ++      +
Sbjct: 107 PEYMATGET------NVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +  + +++
Sbjct: 161 ATCKRFYK-EANHFRLQPENDALEPILLNN--VTILGKVI 197


>gi|120403431|ref|YP_953260.1| LexA repressor [Mycobacterium vanbaalenii PYR-1]
 gi|171769146|sp|A1T7V4|LEXA_MYCVP RecName: Full=LexA repressor
 gi|119956249|gb|ABM13254.1| SOS-response transcriptional repressor, LexA [Mycobacterium
           vanbaalenii PYR-1]
          Length = 232

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 56/219 (25%), Gaps = 23/219 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            + I + I          PS   +    GL  TS   ++ +    +G  R          
Sbjct: 26  QRTILDVIRASVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLR-------RDP 78

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                  +    D       T       +P   F P          +       +   +P
Sbjct: 79  NRPRAVDVRGSDDHAAPIVATDVAGSDSLPEPTFVPVLGRIAAGGPILAEEAVEDVFPLP 138

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       +      K    SM+      GD +++      + GD +      G+ 
Sbjct: 139 RELVG-------EGSLFLLKVVGESMIDAAICDGDWVVVRQQSVADNGDIVAAMID-GEA 190

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + LM  N  +       +D   + +++
Sbjct: 191 TVKTFKR-TKGQVWLMPHNPAFDPI--PGNDAAILGKVV 226


>gi|229012871|ref|ZP_04170038.1| LexA repressor [Bacillus mycoides DSM 2048]
 gi|229134492|ref|ZP_04263305.1| LexA repressor [Bacillus cereus BDRD-ST196]
 gi|229168407|ref|ZP_04296131.1| LexA repressor [Bacillus cereus AH621]
 gi|228615051|gb|EEK72152.1| LexA repressor [Bacillus cereus AH621]
 gi|228649113|gb|EEL05135.1| LexA repressor [Bacillus cereus BDRD-ST196]
 gi|228748415|gb|EEL98273.1| LexA repressor [Bacillus mycoides DSM 2048]
          Length = 213

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 60/226 (26%), Gaps = 36/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 10  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 69

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +   +   +                     P          +    + 
Sbjct: 70  TK--PRAIEILGDNRTETQSVIQ------------------VPIIGKVTAGLPITAVESV 109

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 110 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 163

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 164 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 206


>gi|226308884|ref|YP_002768844.1| LexA repressor [Rhodococcus erythropolis PR4]
 gi|226188001|dbj|BAH36105.1| LexA repressor [Rhodococcus erythropolis PR4]
          Length = 229

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 32/222 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNK-SKRFGIEGRNRWPSTESI 58
               ++I   I  +   +  TPS   +    GL   ++ +K  K    +G  R     ++
Sbjct: 29  PLRQQQILMTIRDLVAANGCTPSTRQIGDAVGLRSTSTVSKHLKSLEEKGFLR--RGAAM 86

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L                       KE+        P        + +    +    +
Sbjct: 87  ARQLDVRPF--------------LVGAKEQSSSNTVTVPVVGDIAAGAPILAEEHADEVL 132

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P                   + +  SM+      GD++++    + + G+ +      
Sbjct: 133 ALPRELVGS-------GTVFGLRVRGESMVDAAICDGDVVVVRRQDEAHSGEIVAAMID- 184

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   KVL  R    + L   N  Y    ++      + +++
Sbjct: 185 GEATVKVLRRR-DGHVYLEPRNPAYS--VIDGDRAAILGKVV 223


>gi|167636646|ref|ZP_02394937.1| LexA repressor [Bacillus anthracis str. A0442]
 gi|167527933|gb|EDR90746.1| LexA repressor [Bacillus anthracis str. A0442]
          Length = 206

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 1   MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E                 K    +P+                    + 
Sbjct: 61  TK--PRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPI----------------TAVESV 102

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 103 EEHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 156

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +I+
Sbjct: 157 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKII 199


>gi|317485530|ref|ZP_07944407.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923210|gb|EFV44419.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
          Length = 238

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 67/226 (29%), Gaps = 21/226 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M           I   A++  ++ + L+R  G+              G ++     S   
Sbjct: 29  MARLRDISDQRQIAAFAQKCGVSQANLSRALGVKAQQL---------GLDKVSKILSAMG 79

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L    +     +    +    TE    +          +G    +  F T         
Sbjct: 80  ALVIFPDEERYPVMRRMACHSPTENVTGDNLHEIPVFEEAGAGLPAEFFST--------A 131

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGD 179
           PE   P    Y +       K    SM P   KG  + +     ++  G   L++     
Sbjct: 132 PENMIPVLPQYNLP-DVRAVKVTGDSMEPTILKGAYVGVIPLDDELEDGGIYLVQRPPFG 190

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223
           +V K ++     +I L S N  +    V     D   I +++W  Q
Sbjct: 191 LVVKRVMQDEDGNIILHSDNPRWKPQKVSNEGYDNIIIGKVVWTWQ 236


>gi|268610570|ref|ZP_06144297.1| hypothetical protein RflaF_13882 [Ruminococcus flavefaciens FD-1]
          Length = 193

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 49/183 (26%), Gaps = 6/183 (3%)

Query: 38  FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           FN  K    +G    PS   I + +   + +               EK       L  P 
Sbjct: 10  FNYIKSRLSDG--ISPSVREIMEAMGFRSTSTAHRYIEALVHEGLIEKTGNLNRTLRLPN 67

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
            G+      G    G     V                 +    K +  SM+      GDI
Sbjct: 68  CGTASVPIMGTVTAGQPITAVENITGYVGFEAQGIDPEELFALKIRGESMINAGILDGDI 127

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +I+        GD ++      D   K           L   N       +   ++E + 
Sbjct: 128 VIVERTQYAENGDIVVAFIDHEDATVKTFYKEE-GHFRLQPENDTMDPIIL--DEVEVLG 184

Query: 217 RIL 219
           +++
Sbjct: 185 KVI 187


>gi|218529602|ref|YP_002420418.1| phage repressor [Methylobacterium chloromethanicum CM4]
 gi|218521905|gb|ACK82490.1| putative phage repressor [Methylobacterium chloromethanicum CM4]
          Length = 244

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 73/241 (30%), Gaps = 36/241 (14%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKI------ 61
           +   I    +   LT   +A    +   +  + +       R+R P+   + ++      
Sbjct: 5   LGPVIREARKARGLTQGDIASALKISRPAVGQWESGDTGPDRDRLPALARLLRVDLGALT 64

Query: 62  ---LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------- 109
              L   ++   + +    +    T    +         S   G  +  V+         
Sbjct: 65  NGELVLLDQEAAEGVSDSEALPAPTANVVEHQDQAAVDVSAFKGPRNVPVYGTGSGGDGG 124

Query: 110 ---PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                G   +    P          A +           S+ P Y  G  + ++   +  
Sbjct: 125 DFSFNGQLIDHAPRPPGI-------ANRKDVYVVYLVGDSISPAYEDGTPIYVDPHRRPQ 177

Query: 167 CGDRLLIKPR------TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL- 219
             D ++++ R       G    K L++R    + L   N    +D ++ +++  + R++ 
Sbjct: 178 PRDYVVVELRGERDGEPGPAFVKRLVARGAGKLRLEQHNPSGQLDPIDETEVVRVHRVIP 237

Query: 220 W 220
           W
Sbjct: 238 W 238


>gi|133873978|gb|ABO40673.1| prophage repressor [Enterobacteria phage mEp332]
          Length = 237

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 66  --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
             +    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 124 KSDAEKWVSTTKKASGSAFWLEVEGNSMTAPT---GYKPSFPDGMLILVDPEQTVEPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|23004335|ref|ZP_00047719.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Magnetospirillum magnetotacticum MS-1]
          Length = 209

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 4/178 (2%)

Query: 43  RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           R       R P   +   + A        +++   S      K    +   +     S  
Sbjct: 29  RARAIEILRMPDAPAAKPVAAEPRRFTPSVVEGGLSGKPPAPKPP--MLQAHDGNGHSVM 86

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNS 161
               G    G   + +         +  +    +    + +  SM       GD+++++ 
Sbjct: 87  VPVMGRIAAGTPISAIESQSHTIAMSPDFLSGGEHYALEVRGDSMVEAGILDGDLVVIHK 146

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               N GD ++      +   K L  R G SI L + N  Y    +    +    +++
Sbjct: 147 QDTANNGDIIVALIDDEEATLKRLRRR-GSSIALEADNPAYETRVLGPDRVRIQGKLV 203


>gi|227495180|ref|ZP_03925496.1| repressor LexA [Actinomyces coleocanis DSM 15436]
 gi|226831632|gb|EEH64015.1| repressor LexA [Actinomyces coleocanis DSM 15436]
          Length = 239

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 8/215 (3%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-T 65
           I E +     +    PS   +A   GL  +S  K     +E +     T  I + L    
Sbjct: 23  ILEILQTSIGQKGFAPSVREIAEAVGLSSSSTIKHHLDILEEKGYIRRTRGISRALEIIN 82

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +               +     IP+       +      G    G         E   
Sbjct: 83  PVSENDSSSETPGATNPLKTDSYFIPVSQISDGHNTDAPLVGRIAAGTPITAEQSIEDVF 142

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +  + Q    +    SM+      GD +++        G+ +      G+   KV
Sbjct: 143 TLPQRFTGKGQLFVLEVFGDSMIDAAICDGDYVVIRQQESAEEGEIVAAMLD-GEATVKV 201

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           L  + G  + L+  N  Y       ++ + + +++
Sbjct: 202 LSKKGGN-VWLLPRNENYLPI--PGNEAQILGKVV 233


>gi|212639337|ref|YP_002315857.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidase) [Anoxybacillus flavithermus WK1]
 gi|212560817|gb|ACJ33872.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidase) [Anoxybacillus flavithermus WK1]
          Length = 213

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPSTESIFK 60
            ++I + I +        PS   +    GL   ++ +    R   +G   R P+     +
Sbjct: 16  QQQILDFIKQEVRTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGFIRRDPTKPRAIE 75

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                       +      +   P          +    N      +
Sbjct: 76  ILDE--------------------HESIPRTNVINVPIVGKVTAGQPITAIENIEEYFPL 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE     +       Q    +    SM       GD +I+      N GD ++      +
Sbjct: 116 PERFVSPDD------QVFMLQIVGESMIEAGILDGDYVIVRQQQTANNGDIVVAMTEDHE 169

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +   I L   N       V+ +    + +++
Sbjct: 170 ATVKRFFKEKD-HIRLQPENSSMEPIIVQNA--TILGKVI 206


>gi|134098342|ref|YP_001104003.1| SOS-response transcriptional repressor, LexA [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910965|emb|CAM01078.1| SOS-response transcriptional repressor, LexA [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 240

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 57/215 (26%), Gaps = 25/215 (11%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+ +AI      H   PS   +    GL  TS    +   +E +          + +   
Sbjct: 42  KVLDAIRDWMRDHGYPPSVREIGDAVGLTSTSSVAYQLRVLERKGYLRRDPHRPRTVGVL 101

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                Q      +  + T           + P          +    +  +   +P+   
Sbjct: 102 VAGGEQNGGDLGAQTKPT-----------YVPVVGRIAAGGPILAEESIEDVFPLPKEIV 150

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                   +      +    SM+      GD + +        GD ++     G+   K 
Sbjct: 151 G-------EGSLFLLQVVGDSMIDLAITDGDWVAVRQQPDAENGD-VVAAMIEGEATVKT 202

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                   + L+  N  Y        D   + +++
Sbjct: 203 FKR-TEDHVWLVPHNQAYEPIL--GDDATILGKVV 234


>gi|257460926|ref|ZP_05626027.1| putative transcriptional regulator [Campylobacter gracilis RM3268]
 gi|257442257|gb|EEV17399.1| putative transcriptional regulator [Campylobacter gracilis RM3268]
          Length = 233

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 68/231 (29%), Gaps = 22/231 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   I  + E   LT   LA  +G+   S    +   +E   +  S   I K+L    +
Sbjct: 2   NLGLRIKNLREERGLTQLELANLSGISRASIQLYEADKVEIPVKKLS--DISKVLDVDID 59

Query: 68  TICQL------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW------ 115
              +            S+  +               +    F        G         
Sbjct: 60  FFTKDKSSLVLRKSFVSNKNSVVSPANLKKSQKEQIAEDQIFIRKLSSAVGAGESVDIEG 119

Query: 116 -NTVGVPEIRSPHNGIYAIQ---TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
                   +      ++ +          K    SM+P+    D  ++        GD L
Sbjct: 120 VEVYDTDVLVPFSRMLFNLPVNEHNIRCLKVVGYSMIPMLYP-DSWVIARMGPSFDGDGL 178

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            I    G+ + K+L      ++ + S+N  Y    +  +D   ++ + ++L
Sbjct: 179 YIIDFGGNFMVKLLQKHPNGTLFVNSVNQEYRSYEIGPNDEVRVQIVGKVL 229


>gi|291006956|ref|ZP_06564929.1| SOS-response transcriptional repressor, LexA [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 57/215 (26%), Gaps = 25/215 (11%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+ +AI      H   PS   +    GL  TS    +   +E +          + +   
Sbjct: 43  KVLDAIRDWMRDHGYPPSVREIGDAVGLTSTSSVAYQLRVLERKGYLRRDPHRPRTVGVL 102

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                Q      +  + T           + P          +    +  +   +P+   
Sbjct: 103 VAGGEQNGGDLGAQTKPT-----------YVPVVGRIAAGGPILAEESIEDVFPLPKEIV 151

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                   +      +    SM+      GD + +        GD ++     G+   K 
Sbjct: 152 G-------EGSLFLLQVVGDSMIDLAITDGDWVAVRQQPDAENGD-VVAAMIEGEATVKT 203

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                   + L+  N  Y        D   + +++
Sbjct: 204 FKR-TEDHVWLVPHNQAYEPIL--GDDATILGKVV 235


>gi|310777871|ref|YP_003966204.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
 gi|309747194|gb|ADO81856.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
          Length = 219

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 11/213 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I    +R ++    LA K  + P   +  +        R P+      IL        
Sbjct: 5   ERIKIYMKRSSVKGKELAVKCQISPQYLSDIRSG-----RRTPTFHIFNLILDNLKLLED 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-NG 129
           +  +L      + +K      +              G             PE  SP    
Sbjct: 60  ERNELLELWKESKDKNYSRSNVKNVI-GEIIKLPIVGTASASPGKLNFENPEKHSPVITY 118

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVLIS 187
                ++    K +  SM P  + G  +I+++         +++++     +   KVL  
Sbjct: 119 EGMSYSKCFIMKVEGDSMEPRIKDGSEIIVDTNKNTLEENLNKIVVFNLNDEAYVKVL-K 177

Query: 188 RRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
                + L S+N  YP   +    D   + R++
Sbjct: 178 LNKNKLVLQSINDKYPNIAIKSTDDFNIVGRVV 210


>gi|163941295|ref|YP_001646179.1| LexA repressor [Bacillus weihenstephanensis KBAB4]
 gi|229621198|sp|A9VPX5|LEXA_BACWK RecName: Full=LexA repressor
 gi|163863492|gb|ABY44551.1| transcriptional repressor, LexA family [Bacillus weihenstephanensis
           KBAB4]
          Length = 204

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 60/226 (26%), Gaps = 36/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 1   MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    +   +   +                     P          +    + 
Sbjct: 61  TK--PRAIEILGDNRTETQSVIQ------------------VPIIGKVTAGLPITAVESV 100

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 101 EDHFPLPASIV------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVA 154

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 155 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 197


>gi|296393371|ref|YP_003658255.1| LexA family transcriptional repressor [Segniliparus rotundus DSM
           44985]
 gi|296180518|gb|ADG97424.1| transcriptional repressor, LexA family [Segniliparus rotundus DSM
           44985]
          Length = 289

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 62/219 (28%), Gaps = 21/219 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            ++I + I          PS   +   AGL  TS   ++ +    +G  R     +  + 
Sbjct: 77  QQEILDIIRSSIRERGFPPSIREIGEAAGLASTSSVAHQLRSLQQKGYLR--REANRPRA 134

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +     +       P S+   ++ +   + +             + V    +  +   +P
Sbjct: 135 VDTRAISAPSGELTPESEEPQSQPQPTAVLVPLL----GRIAAGAPVLAEEHVEDLFPLP 190

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                 +                 SM+      GD +++           ++      + 
Sbjct: 191 RELVGTDAA-------FLLSVTGDSMVDAGVHDGDWVVVRPTKTPVYDGEIVAALFDDEA 243

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L    GR + L   N  Y          + + +++
Sbjct: 244 TVKTLRRH-GREVWLYPENKAYQP--FRGEKAKILGKVI 279


>gi|282851280|ref|ZP_06260645.1| putative repressor LexA [Lactobacillus gasseri 224-1]
 gi|282557248|gb|EFB62845.1| putative repressor LexA [Lactobacillus gasseri 224-1]
          Length = 202

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 23/208 (11%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S ++I + ++++ E  +++ S LAR+ G+  +  ++          R           
Sbjct: 1   MRSSEEIIDYLNQLREEQDVSISELARRVGMAKSGVSRYFNHT-----REFPINRAPAFA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A +     LL L          +          P        + +    N    +    
Sbjct: 56  KALHIKTEDLLGL----------EPINQNKPRMVPLLGTIAMGAPITAEQNIEKYIP--- 102

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                   YA        + Q  SM PL   G I I+     V  G+ +      G+   
Sbjct: 103 --EYMMDRYA-DDTLFALRCQGDSMYPLIPNGAIAIIRQQADVEDGE-VAAVLINGEATL 158

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           K ++   G+++ L   N  Y    ++  
Sbjct: 159 KKVLHV-GKTVVLRPANPDYKDIILDKD 185


>gi|251796630|ref|YP_003011361.1| SOS-response transcriptional repressor, LexA [Paenibacillus sp.
           JDR-2]
 gi|247544256|gb|ACT01275.1| SOS-response transcriptional repressor, LexA [Paenibacillus sp.
           JDR-2]
          Length = 206

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 58/227 (25%), Gaps = 36/227 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53
           M+  S+++  I E I          PS   +    GL  +S        +E +    R P
Sbjct: 1   MSKISNRQQSILEFIKNEVRDKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL         L  +                               G    G 
Sbjct: 61  TKPRAIEILDQDGVDGIILPAVAQ-------------------------VPIVGKVTAGV 95

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                   E   P +  +    +         SM       GD +I+      N GD ++
Sbjct: 96  PITATENIEEYFPLSAHFVGDDEVFILNVMGDSMIEAGIHNGDYVIVRQQQTANNGDIVV 155

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +   I L   N       +    +  + +++
Sbjct: 156 AMTEDDEATVKTFYKEKD-HIRLQPENSTMEPIRLNN--VTILGKVV 199


>gi|320086867|emb|CBY96639.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 234

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 18/214 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               ++  LT   LA   G    +             R PS E I  I+         L 
Sbjct: 24  KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 78

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130
                D   +       P  +        F        GN    V    + EI       
Sbjct: 79  SDGMVDYPDSNLNNVSSPRPHTE---IRRFPLISWVSAGNWCEAVEPYQLREIEVWPETT 135

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
                +      +  SM         +G  ++++  I+   G  ++       +   K  
Sbjct: 136 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPDIEPTNGKLVVAKLESENEATFKKY 195

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I   G+   L  LN  Y +  +  +    I  ++
Sbjct: 196 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 227


>gi|293366695|ref|ZP_06613371.1| LexA repressor [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318996|gb|EFE59366.1| LexA repressor [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 265

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 31/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +    +I++ I ++ +     PS   +    GL   ++ +                
Sbjct: 60  MRELTKRQSEIYDYIKKIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 108

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L                +  + +  E  +      P          +    N  
Sbjct: 109 ------LEEKGYIRRDPTKPRAIEIVSEQLDEVNVEETIHVPVIGKVTAGVPITAVENIE 162

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
               +PE  +  +      +          SM       GD +I+ S      GD ++  
Sbjct: 163 EYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 217

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K     +     L   N       ++   +  + +++
Sbjct: 218 TEDEEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VIVVGKVI 259


>gi|87159694|dbj|BAE79430.1| temperature-sensitive lambda-repressor [Cloning vector pPL450]
 gi|87159697|dbj|BAE79432.1| temperature-sensitive lambda-repressor [Cloning vector pPL451]
 gi|87159700|dbj|BAE79434.1| temperature-sensitive lambda-repressor [Cloning vector pPL452]
 gi|87159703|dbj|BAE79436.1| temperature-sensitive lambda-repressor [Cloning vector pCL476]
 gi|87159706|dbj|BAE79438.1| temperature-sensitive lambda-repressor [Cloning vector pCL478]
 gi|87159709|dbj|BAE79440.1| temperature-sensitive lambda-repressor [Cloning vector pND706]
 gi|87159712|dbj|BAE79442.1| temperature-sensitive lambda-repressor [Cloning vector pND707]
          Length = 237

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++              F 
Sbjct: 66  --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|15799951|ref|NP_285963.1| putative cI repressor protein for prophage CP-933H [Escherichia
           coli O157:H7 EDL933]
 gi|15829528|ref|NP_308301.1| hypothetical protein ECs0274 [Escherichia coli O157:H7 str. Sakai]
 gi|168750234|ref|ZP_02775256.1| prophage repressor [Escherichia coli O157:H7 str. EC4113]
 gi|168757277|ref|ZP_02782284.1| prophage repressor [Escherichia coli O157:H7 str. EC4401]
 gi|168763488|ref|ZP_02788495.1| prophage repressor [Escherichia coli O157:H7 str. EC4501]
 gi|168771975|ref|ZP_02796982.1| prophage repressor [Escherichia coli O157:H7 str. EC4486]
 gi|168776110|ref|ZP_02801117.1| prophage repressor [Escherichia coli O157:H7 str. EC4196]
 gi|168783011|ref|ZP_02808018.1| prophage repressor [Escherichia coli O157:H7 str. EC4076]
 gi|195938652|ref|ZP_03084034.1| hypothetical protein EscherichcoliO157_19857 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808008|ref|ZP_03250345.1| prophage repressor [Escherichia coli O157:H7 str. EC4206]
 gi|208812242|ref|ZP_03253571.1| prophage repressor [Escherichia coli O157:H7 str. EC4045]
 gi|208819276|ref|ZP_03259596.1| prophage repressor [Escherichia coli O157:H7 str. EC4042]
 gi|209396038|ref|YP_002268874.1| prophage repressor [Escherichia coli O157:H7 str. EC4115]
 gi|217326454|ref|ZP_03442538.1| prophage repressor [Escherichia coli O157:H7 str. TW14588]
 gi|254791408|ref|YP_003076245.1| putative cI repressor protein for prophage CP-933H [Escherichia
           coli O157:H7 str. TW14359]
 gi|331682213|ref|ZP_08382835.1| repressor protein CI [Escherichia coli H299]
 gi|12513020|gb|AAG54571.1|AE005202_9 putative cI repressor protein for prophage CP-933H [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359731|dbj|BAB33697.1| repressor protein CI [Escherichia coli O157:H7 str. Sakai]
 gi|187768417|gb|EDU32261.1| prophage repressor [Escherichia coli O157:H7 str. EC4196]
 gi|188015589|gb|EDU53711.1| prophage repressor [Escherichia coli O157:H7 str. EC4113]
 gi|188999620|gb|EDU68606.1| prophage repressor [Escherichia coli O157:H7 str. EC4076]
 gi|189355754|gb|EDU74173.1| prophage repressor [Escherichia coli O157:H7 str. EC4401]
 gi|189359431|gb|EDU77850.1| prophage repressor [Escherichia coli O157:H7 str. EC4486]
 gi|189366359|gb|EDU84775.1| prophage repressor [Escherichia coli O157:H7 str. EC4501]
 gi|208727809|gb|EDZ77410.1| prophage repressor [Escherichia coli O157:H7 str. EC4206]
 gi|208733519|gb|EDZ82206.1| prophage repressor [Escherichia coli O157:H7 str. EC4045]
 gi|208739399|gb|EDZ87081.1| prophage repressor [Escherichia coli O157:H7 str. EC4042]
 gi|209157438|gb|ACI34871.1| prophage repressor [Escherichia coli O157:H7 str. EC4115]
 gi|217322675|gb|EEC31099.1| prophage repressor [Escherichia coli O157:H7 str. TW14588]
 gi|254590808|gb|ACT70169.1| putative cI repressor protein for prophage CP-933H [Escherichia
           coli O157:H7 str. TW14359]
 gi|326338747|gb|EGD62566.1| Phage repressor [Escherichia coli O157:H7 str. 1044]
 gi|326342468|gb|EGD66248.1| Phage repressor [Escherichia coli O157:H7 str. 1125]
 gi|331080637|gb|EGI51813.1| repressor protein CI [Escherichia coli H299]
          Length = 237

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 66  --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 124 KGDAEKWVSTTKKASGSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|220931986|ref|YP_002508894.1| SOS-response transcriptional repressor, LexA [Halothermothrix
           orenii H 168]
 gi|219993296|gb|ACL69899.1| SOS-response transcriptional repressor, LexA [Halothermothrix
           orenii H 168]
          Length = 207

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 59/225 (26%), Gaps = 30/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   K I   I    +     PS   + +  GL   +                S  
Sbjct: 1   MEELTERQKDILRFIQEEIKEKGYPPSVREIGKAVGLKSPA----------------SVH 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           S  K L   N            +    ++ +    +L+ P  G             N  +
Sbjct: 45  SHLKSLEKFNYIRRDPSKPRAIEVLYGDEDKINKEMLHIPIVGQVTAGQPI-LAQENIED 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              VP      +       +    K +  SM+      GD +I         GD ++   
Sbjct: 104 YFPVPTDYVRTSD-----KELFMLKIKGNSMINAGIYDGDYVIAQKQDNAENGDIIIALI 158

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              +   K     R   I L   N       V  +   + + +I+
Sbjct: 159 D-NEATVKRYYKERD-HIRLQPENPDMDPIYVNFNTYFKVLGKII 201


>gi|310778853|ref|YP_003967186.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
 gi|309748176|gb|ADO82838.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
          Length = 226

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 12/217 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             K+   I +  E   +  + LA KAGL  T  ++ +     G+    +   + ++  A 
Sbjct: 11  RNKLALYIKQNREARGIGLNQLALKAGLQKTILSRLE----SGKILKINPFFLKQLAKAL 66

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            +   +L  +     +  E K                    G    G+ +  +    I +
Sbjct: 67  GKDYKELYRIVGYLEKEGEIKSNGR----IVDLSICELPVYGKAAAGDGYINLDNI-IYT 121

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                          +    SM P   +GD  +++         ++ +     + + K +
Sbjct: 122 KRVIANGFSKNSFLVEVAGDSMTPEINEGDFALVDPMENDYISGKVYVVTYGDETLIKKI 181

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
                  + L S N  YP   +    IE      R+L
Sbjct: 182 ECPAENIVVLKSYNAKYPDKYIMDEQIEGLKIEGRVL 218


>gi|145635989|ref|ZP_01791671.1| hypothetical protein CGSHiAA_00695 [Haemophilus influenzae PittAA]
 gi|145266755|gb|EDK06777.1| hypothetical protein CGSHiAA_00695 [Haemophilus influenzae PittAA]
          Length = 301

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 67/209 (32%), Gaps = 15/209 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI----LAA 64
           + + +  +  +  ++   LA +  ++ +   +          +     ++ ++       
Sbjct: 87  LLDNVKFLMRKKGISLPLLAERTEIEKSRLLELLNSDNVENEK-LFLNTLEQLFLVSADC 145

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                        +  +        +P+  +   G+ G +    +P G     +  P   
Sbjct: 146 LLYDDLSQNPKGVNFLKMRSIPVNHVPIRGYAQLGTEGHWIDLEYPVGEGDGYIWWPSR- 204

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                           K Q  SM P  + G+ +I+    ++  GD +L+      ++ K+
Sbjct: 205 ---------DEDVYALKCQGDSMTPRIKHGEYVIIEPNHEIKNGDEVLVVTDEDQVMVKI 255

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
               +G  + L S+N  +    +   +I 
Sbjct: 256 YAYEQGGRLTLYSVNENHEPINLYQENIR 284



 Score = 36.7 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 7/79 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESI 58
          M    H  +   ID        + S LA K G+  +   + K       G+ +    +  
Sbjct: 4  MKEIRHDNLLLLID----EAG-STSELASKTGIAVSYLLQIKNKNAIQNGKPKGIGDKIA 58

Query: 59 FKILAATNETICQLLDLPF 77
           K+     +    L     
Sbjct: 59 AKLEDGMGKPRGWLDQQHQ 77


>gi|19343388|ref|NP_597898.1| regulatory protein cI [Enterobacteria phage HK022]
          Length = 262

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +    ++  L      + LA +  + P + +K          R    ES+  +L  T 
Sbjct: 39  QRLALACDKAGLPLHGRQADLAVRLKVTPKAISKWFNGESI--PRKDKMESLASVLGTTA 96

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +    D          +      +       S G           K   +     ++ 
Sbjct: 97  AYLHGYADDDGITVNHLSRSNDYYRVDVLDVQASAGPGTMVSNEFIEKIRAIEYTTEQAR 156

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                  Q        +  SM      GD + ++ +I    GD + +      +  K L 
Sbjct: 157 ILFNGRPQESVKVITVRGDSMEGTINPGDEIFVDVSITCFDGDGIYVFVYGKTMHVKRLQ 216

Query: 187 SRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
            ++   + ++S N  Y    +   E   +  +A++L
Sbjct: 217 MQKN-RLAVISDNAAYDRWYIEEGEEEQLHILAKVL 251


>gi|1350835|sp|P18680|RPC1_BPHK0 RecName: Full=26 kDa repressor protein; AltName: Full=Regulatory
           protein CI
 gi|435310|emb|CAA34222.1| unnamed protein product [Enterobacteria phage HK022]
          Length = 235

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 10/216 (4%)

Query: 11  EAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +    ++  L      + LA +  + P + +K          R    ES+  +L  T 
Sbjct: 12  QRLALACDKAGLPLHGRQADLAVRLKVTPKAISKWFNGESI--PRKDKMESLASVLGTTA 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +    D          +      +       S G           K   +     ++ 
Sbjct: 70  AYLHGYADDDGITVNHLSRSNDYYRVDVLDVQASAGPGTMVSNEFIEKIRAIEYTTEQAR 129

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                  Q        +  SM      GD + ++ +I    GD + +      +  K L 
Sbjct: 130 ILFNGRPQESVKVITVRGDSMEGTINPGDEIFVDVSITCFDGDGIYVFVYGKTMHVKRLQ 189

Query: 187 SRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
            ++   + ++S N  Y    +   E   +  +A++L
Sbjct: 190 MQKN-RLAVISDNAAYDRWYIEEGEEEQLHILAKVL 224


>gi|17426234|ref|NP_510900.1| similar to phage phi PVL repressor [Staphylococcus phage phiETA]
 gi|8918421|dbj|BAA97592.1| unnamed protein product [Staphylococcus phage phiETA]
          Length = 238

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 31/236 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++     ++ S L+R+ G+   S +       E +        + K+L      + 
Sbjct: 6   DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKVLNVNEAWLM 63

Query: 71  ----------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT--------- 111
                     +  D+     + T  ++  +                 +            
Sbjct: 64  GFDISKNRKIENNDITSIYNKLTPPRQNNVLNYANSQLDEQNSKGDNIVDINSYKQDKTP 123

Query: 112 -------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                            E          +   D   K    SM P+++ G+I+ +     
Sbjct: 124 VNVNGCVSAGVGERLHDETLFTEMVKAPVPPHDLALKVNGDSMEPMFKDGEIIFVEKTHN 183

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   +      +   K +       + L+SLN  Y          +  + +++
Sbjct: 184 IKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKKYRDLHFYRNESVRLVGKVI 237


>gi|188997121|ref|YP_001931372.1| transcriptional repressor, LexA family [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932188|gb|ACD66818.1| transcriptional repressor, LexA family [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 210

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 35/220 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDP-TSFNKSKRFGIEGRNRWPSTES 57
           MT    K+I + I    +++   P+   +A+   L   ++ +                E 
Sbjct: 1   MTKR-QKEILDFIIEYYQKNGYYPTLMEIAKHFNLSAVSTIH----------------EH 43

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + K+             +   +     +     P      +G     ++  F        
Sbjct: 44  LQKLEQEGYIKRSGKGKIEIVEKSPKNENSFIFPYYGTISAGKPIAIENQTF------EY 97

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           + + +I                 + +  SM+       DI+I+ +  +   G+ ++    
Sbjct: 98  IDLSDILR--------CENCYALRVKGNSMIGEFILNDDIIIVENRKEALNGEIVVAVID 149

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
             +   K   +     I L+  N  Y     E   +E   
Sbjct: 150 GEETTLKKFYNLGNGYIKLVPANPDYEPMIYEADRVEIQG 189


>gi|322384025|ref|ZP_08057752.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151372|gb|EFX44562.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 210

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 25/222 (11%)

Query: 1   MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M     ++I+   I+++ +  +LT S LA+  G+  ++ +  ++       ++P    I 
Sbjct: 1   MDDKKIQEIFASNINKLRKSKSLTQSDLAKILGVGVSTVSDWEKA-----KKYPRAGVIE 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K+            ++  S     E +   +P++                  GN      
Sbjct: 56  KLSQHFGIPKSNFFEVQGSATDLYEDELVRLPIVGKVSC-------------GNGVMAYE 102

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E        +    +    + +  SM+      GD+L++     V  G+   +     
Sbjct: 103 EIEAYEETPSSWVRGGEFFYVRAKGDSMINARIFDGDLLLIRKQNDVEEGEIAAVLID-D 161

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIAR 217
           ++  K +  R    + L S N  Y           +I+ + +
Sbjct: 162 EVYLKRVHKR-DDCLLLESENPTYKPIYRTKENYCEIKILGK 202


>gi|154509060|ref|ZP_02044702.1| hypothetical protein ACTODO_01577 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798694|gb|EDN81114.1| hypothetical protein ACTODO_01577 [Actinomyces odontolyticus ATCC
           17982]
          Length = 226

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 1   MTSFS----HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           MT  S    H+ I   I+         PS   +A   GL   S  K     +E       
Sbjct: 1   MTERSISDRHRAILRVINEKLASSGFPPSVREIASAVGLASPSTVKHHLDALEADGYLVR 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
              + + L  T+    +L   P +    +EK  +    +             G    G  
Sbjct: 61  EPGLPRALDLTDRARAELGITPSTQ--PSEKVVRIEVPVSHVEEEGTAIPLVGRIAAGAP 118

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
                  E                  +    SM+      GD +++ S  +   G+ +  
Sbjct: 119 ITAEQHVEDVFRLPTSMTGHGDLFMLEVSGESMVDAGIFDGDYVVIRSQNEARNGEFVAA 178

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G+   K L S  G  + L+  N  Y        +   + +++
Sbjct: 179 MID-GEATVKEL-SITGGHVWLLPHNADYSPI--PGDEATILGKVV 220


>gi|218549402|ref|YP_002383193.1| repressor protein of bacteriophage origin [Escherichia fergusonii
           ATCC 35469]
 gi|218356943|emb|CAQ89575.1| repressor protein of bacteriophage origin [Escherichia fergusonii
           ATCC 35469]
          Length = 235

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 15/211 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            K+  + + +  +   L        +AR   L     +K      E   R     ++ K 
Sbjct: 8   RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 65

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L           D+ +    T+     +   L F      G               + + 
Sbjct: 66  LNV---------DVVWLQHGTSLNGANDEDTLSFVGKLKKGLVRVVGEAILGVDGAIEMT 116

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E R     IY+        + +  SM P  + G+ +++    +V  GD + ++   G  +
Sbjct: 117 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTIEGHNM 176

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
            K+L   R       S+N  +   T+    +
Sbjct: 177 IKILGYDRDGEYQFTSINQDHRPITLPYHQV 207


>gi|133873987|gb|ABO40681.1| prophage repressor [Enterobacteria phage HK244]
          Length = 237

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 66  --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|9626292|ref|NP_040628.1| repressor [Enterobacteria phage lambda]
 gi|238903101|ref|YP_002928897.1| Repressor protein CI [Escherichia coli BW2952]
 gi|133353|sp|P03034|RPC1_LAMBD RecName: Full=Repressor protein CI
 gi|15057|emb|CAA24991.1| unnamed protein product [Enterobacteria phage lambda]
 gi|215147|gb|AAA96581.1| rexb (exclusion;144) [Enterobacteria phage lambda]
 gi|8919960|emb|CAB96428.1| phage lambda repressor protein CI [Escherichia coli]
 gi|60594765|gb|AAX29986.1| lambda repressor CI [Expression vector pINV-110]
 gi|62114612|gb|AAX63486.1| lambda repressor protein [Low threshold vector pLTSUB-302]
 gi|238863451|gb|ACR65449.1| Repressor protein CI [Escherichia coli BW2952]
          Length = 237

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 66  --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|9634163|ref|NP_037735.1| prophage repressor CI [Enterobacteria phage HK97]
 gi|193069559|ref|ZP_03050512.1| prophage repressor [Escherichia coli E110019]
 gi|215487607|ref|YP_002330038.1| predicted repressor protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218688908|ref|YP_002397120.1| Repressor protein CI from prophage [Escherichia coli ED1a]
 gi|300825481|ref|ZP_07105548.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
 gi|6901592|gb|AAF31095.1|AF069529_8 prophage repressor CI [Enterobacteria phage HK97]
 gi|133874013|gb|ABO40704.1| prophage repressor [Enterobacteria phage mEp234]
 gi|133874022|gb|ABO40712.1| prophage repressor [Enterobacteria phage HK106]
 gi|192957106|gb|EDV87556.1| prophage repressor [Escherichia coli E110019]
 gi|215265679|emb|CAS10082.1| predicted repressor protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218426472|emb|CAR07300.1| Repressor protein CI from prophage [Escherichia coli ED1a]
 gi|300522067|gb|EFK43136.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
          Length = 237

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 66  --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|326333212|ref|ZP_08199459.1| repressor LexA [Nocardioidaceae bacterium Broad-1]
 gi|325948856|gb|EGD40949.1| repressor LexA [Nocardioidaceae bacterium Broad-1]
          Length = 254

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 61/225 (27%), Gaps = 23/225 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGI----EGRNRWPS 54
            ++I   +    E+    PS   +    GL  TS         ++ G+      R R   
Sbjct: 34  QQRILAHLRDSIEQRGYPPSMREIGAAVGLTSTSSVAHQLRALEQRGLIRKDPKRPRALE 93

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                 +      +  +      ++       +  +  L    +  G           + 
Sbjct: 94  VFLPEVMAHRKAMSGEETEPTITAEAVVNPNPDAAMVPLVGRIAAGGPILAEETSSQQSV 153

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            +   +P+    +                  SM+      GD +++        G+ +  
Sbjct: 154 EDVFPLPKQLVGN-------GDLFLLSVSGDSMVDAAICDGDFVVVRQQPTAENGEIVAA 206

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
               G+   K L  +    + L+  N  Y     + +    + ++
Sbjct: 207 LID-GEATVKTLSRK-DGKVWLLPHNAAYEPI--DGTHATILGKV 247


>gi|312870861|ref|ZP_07730966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           3008A-a]
 gi|312872168|ref|ZP_07732241.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092252|gb|EFQ50623.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311093551|gb|EFQ51890.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           3008A-a]
          Length = 438

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 68/233 (29%), Gaps = 33/233 (14%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + +++N+    LA K G    ++ ++ ++         P  + + +I    +  + 
Sbjct: 213 NLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYT-----PKIKVLAQIADIFHVDLD 267

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------------------- 109
            L++   ++ +T   K+  +  +    S       + V+                     
Sbjct: 268 DLMNKDLTNSQTKVDKDSLVEQIAETSSLLHISRQAKVYNYAREQLDEQLNEKRSIYVVG 327

Query: 110 --PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
               G               +        D     +  SM P      I+  +    +  
Sbjct: 328 TSAAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEI 384

Query: 168 GDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+  + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 385 GEIGIFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 437


>gi|293192309|ref|ZP_06609420.1| repressor LexA [Actinomyces odontolyticus F0309]
 gi|292820224|gb|EFF79218.1| repressor LexA [Actinomyces odontolyticus F0309]
          Length = 226

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 1   MTSFS----HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           MT  S    H+ I   I+         PS   +A   GL   S  K     +E       
Sbjct: 1   MTERSISDRHRAILRVINEKLASSGFPPSVREIASAVGLASPSTVKHHLDALEADGYLVR 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
              + + L  T+    +L   P +    +EK  +    +             G    G  
Sbjct: 61  EPGLPRALDLTDRARAELGITPSTQ--PSEKVVRIEVPISHVEEEGTAIPLVGRIAAGAP 118

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
                  E                  +    SM+      GD +++ S  +   G+ +  
Sbjct: 119 ITAEQHVEDVFRLPTSMTGHGDLFMLEVSGESMVDAGIFDGDYVVIRSQNEARNGEFVAA 178

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G+   K L S  G  + L+  N  Y        +   + +++
Sbjct: 179 MID-GEATVKEL-SITGGHVWLLPHNADYSPI--PGDEATILGKVV 220


>gi|222151244|ref|YP_002560398.1| SOS regulatory LexA protein [Macrococcus caseolyticus JCSC5402]
 gi|222120367|dbj|BAH17702.1| SOS regulatory LexA protein [Macrococcus caseolyticus JCSC5402]
          Length = 206

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 51/225 (22%), Gaps = 31/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +   ++I+E +  +       PS   +    GL   ++ +                
Sbjct: 1   MRELTKRQEEIYEYLKHIVSTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L                +    E  +         P          +    N  
Sbjct: 50  ------LEEKGYIKRDPTKPRAIEIMHGENSQDYSEATIHVPVIGKVTAGVPITAIENVE 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
               +P   +  +      +     +    SM        D +I+        GD ++  
Sbjct: 104 EYFPLPAHFTSSHN-----SDIFILEVVGESMIEAGILDRDKVIVRRQSIAENGDIIVAM 158

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K           L   N       ++   +  + +++
Sbjct: 159 TDEDEATVKRFFK-ENNRYRLQPENLTMEPLYLDS--VTVLGKVV 200


>gi|15924329|ref|NP_371863.1| LexA repressor [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926920|ref|NP_374453.1| LexA repressor [Staphylococcus aureus subsp. aureus N315]
 gi|82750933|ref|YP_416674.1| LexA repressor [Staphylococcus aureus RF122]
 gi|148267827|ref|YP_001246770.1| LexA repressor [Staphylococcus aureus subsp. aureus JH9]
 gi|150393889|ref|YP_001316564.1| LexA repressor [Staphylococcus aureus subsp. aureus JH1]
 gi|156979659|ref|YP_001441918.1| LexA repressor [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316479|ref|ZP_04839692.1| LexA repressor [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253731972|ref|ZP_04866137.1| LexA repressor [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253733414|ref|ZP_04867579.1| LexA repressor [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006127|ref|ZP_05144728.2| LexA repressor [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795604|ref|ZP_05644583.1| LexA repressor [Staphylococcus aureus A9781]
 gi|258413414|ref|ZP_05681690.1| SOS regulatory LexA protein [Staphylococcus aureus A9763]
 gi|258420477|ref|ZP_05683419.1| LexA repressor [Staphylococcus aureus A9719]
 gi|258424809|ref|ZP_05687683.1| LexA repressor [Staphylococcus aureus A9635]
 gi|258434747|ref|ZP_05688821.1| SOS regulatory LexA protein [Staphylococcus aureus A9299]
 gi|258444677|ref|ZP_05693006.1| SOS-response transcriptional repressor [Staphylococcus aureus
           A8115]
 gi|258447489|ref|ZP_05695633.1| LexA repressor [Staphylococcus aureus A6300]
 gi|258449330|ref|ZP_05697433.1| SOS-response transcriptional repressor [Staphylococcus aureus
           A6224]
 gi|258454711|ref|ZP_05702675.1| SOS regulatory LexA protein [Staphylococcus aureus A5937]
 gi|269202962|ref|YP_003282231.1| LexA repressor [Staphylococcus aureus subsp. aureus ED98]
 gi|282892829|ref|ZP_06301064.1| LexA repressor [Staphylococcus aureus A8117]
 gi|282929154|ref|ZP_06336734.1| LexA repressor [Staphylococcus aureus A10102]
 gi|295406281|ref|ZP_06816088.1| LexA repressor [Staphylococcus aureus A8819]
 gi|296275375|ref|ZP_06857882.1| LexA repressor [Staphylococcus aureus subsp. aureus MR1]
 gi|297244510|ref|ZP_06928393.1| LexA repressor [Staphylococcus aureus A8796]
 gi|54037735|sp|P65820|LEXA_STAAN RecName: Full=LexA repressor
 gi|54041546|sp|P65819|LEXA_STAAM RecName: Full=LexA repressor
 gi|123741035|sp|Q2YXS8|LEXA_STAAB RecName: Full=LexA repressor
 gi|171769944|sp|A7X1Z4|LEXA_STAA1 RecName: Full=LexA repressor
 gi|13701137|dbj|BAB42432.1| SOS regulatory LexA protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247110|dbj|BAB57501.1| SOS regulatory LexA protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|82656464|emb|CAI80886.1| DNA damage SOS regulatory repressor protein [Staphylococcus aureus
           RF122]
 gi|147740896|gb|ABQ49194.1| SOS-response transcriptional repressor, LexA [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946341|gb|ABR52277.1| LexA repressor [Staphylococcus aureus subsp. aureus JH1]
 gi|156721794|dbj|BAF78211.1| SOS regulatory LexA protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253724382|gb|EES93111.1| LexA repressor [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253728468|gb|EES97197.1| LexA repressor [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789576|gb|EEV27916.1| LexA repressor [Staphylococcus aureus A9781]
 gi|257839978|gb|EEV64446.1| SOS regulatory LexA protein [Staphylococcus aureus A9763]
 gi|257843425|gb|EEV67832.1| LexA repressor [Staphylococcus aureus A9719]
 gi|257844973|gb|EEV69013.1| LexA repressor [Staphylococcus aureus A9635]
 gi|257849108|gb|EEV73090.1| SOS regulatory LexA protein [Staphylococcus aureus A9299]
 gi|257850170|gb|EEV74123.1| SOS-response transcriptional repressor [Staphylococcus aureus
           A8115]
 gi|257853680|gb|EEV76639.1| LexA repressor [Staphylococcus aureus A6300]
 gi|257857318|gb|EEV80216.1| SOS-response transcriptional repressor [Staphylococcus aureus
           A6224]
 gi|257863094|gb|EEV85858.1| SOS regulatory LexA protein [Staphylococcus aureus A5937]
 gi|262075252|gb|ACY11225.1| LexA repressor [Staphylococcus aureus subsp. aureus ED98]
 gi|282589257|gb|EFB94352.1| LexA repressor [Staphylococcus aureus A10102]
 gi|282764826|gb|EFC04951.1| LexA repressor [Staphylococcus aureus A8117]
 gi|283470554|emb|CAQ49765.1| LexA repressor [Staphylococcus aureus subsp. aureus ST398]
 gi|285817018|gb|ADC37505.1| SOS-response repressor and protease LexA [Staphylococcus aureus
           04-02981]
 gi|294968869|gb|EFG44891.1| LexA repressor [Staphylococcus aureus A8819]
 gi|297178540|gb|EFH37786.1| LexA repressor [Staphylococcus aureus A8796]
 gi|298694640|gb|ADI97862.1| DNA damage SOS regulatory repressor protein [Staphylococcus aureus
           subsp. aureus ED133]
 gi|302332956|gb|ADL23149.1| DNA damage-inducible repressor [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|312829736|emb|CBX34578.1| lexA repressor [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131141|gb|EFT87125.1| LexA repressor [Staphylococcus aureus subsp. aureus CGS03]
 gi|323441123|gb|EGA98830.1| LexA repressor [Staphylococcus aureus O11]
 gi|323443991|gb|EGB01602.1| LexA repressor [Staphylococcus aureus O46]
 gi|329727077|gb|EGG63533.1| repressor LexA [Staphylococcus aureus subsp. aureus 21172]
 gi|329733592|gb|EGG69920.1| repressor LexA [Staphylococcus aureus subsp. aureus 21193]
          Length = 207

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 32/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +    +I+  I ++ +     PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MRELTKRQSEIYNYIKQVVQMKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +   ++     +++  +       K      +                   N 
Sbjct: 61  TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +PE  +  +      +          SM       GD +I+ S      GD ++ 
Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 159 MTEEDEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VAVIGKVI 201


>gi|228992378|ref|ZP_04152309.1| LexA repressor [Bacillus pseudomycoides DSM 12442]
 gi|229005925|ref|ZP_04163619.1| LexA repressor [Bacillus mycoides Rock1-4]
 gi|228755389|gb|EEM04740.1| LexA repressor [Bacillus mycoides Rock1-4]
 gi|228767403|gb|EEM16035.1| LexA repressor [Bacillus pseudomycoides DSM 12442]
          Length = 206

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 1   MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E   +             K    +P+                    + 
Sbjct: 61  TK--PRAIEILGEVRIETDTQSVVQVPIVGKVTAGLPI----------------TAVESV 102

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 103 EEHFPLPASVV------AGADQVFMLRISGDSMIEAGILDGDLVVVRQQHSAYNGEIVVA 156

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 157 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILDK--VSVIGKVI 199


>gi|228476741|ref|ZP_04061407.1| transcriptional regulator [Streptococcus salivarius SK126]
 gi|228251612|gb|EEK10713.1| transcriptional regulator [Streptococcus salivarius SK126]
          Length = 229

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 16/222 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68
            + +  + E   ++ + +A+  G+  +S+   +    +   +  S    +F +      +
Sbjct: 4   GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63

Query: 69  ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +++++         +          +E+E      P      +        G  +   
Sbjct: 64  EHEIVEVYLELNEENRQEALRLTKALLEEQEAEKQKAPVIPLYSYKVFERLSAGTGYTY- 122

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +              D        SM P Y  G+++++        G  +      G
Sbjct: 123 -FGDGNYDEVFYDEELDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AVYAVDWDG 180

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +       + L+SLN  Y        +    I +I+
Sbjct: 181 QTYIKKVYREEDG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221


>gi|111017593|ref|YP_700565.1| repressor LexA [Rhodococcus jostii RHA1]
 gi|110817123|gb|ABG92407.1| repressor LexA [Rhodococcus jostii RHA1]
          Length = 247

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 29/218 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++I  AI      H  TPS   +    GL   +S +K  +   E               
Sbjct: 49  QRRILAAIRDCVAAHGCTPSTRQIGDAVGLRSASSVSKHLKSLEEK-------------- 94

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                       L      +  K+ +        P        + +    +    + +P 
Sbjct: 95  GFLRRGTAMARQLDVRPFLSEGKRGRSSENNVTVPVVGDIAAGAPILAEEHADEMLTLPR 154

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                             + +  SM+      GD++++    + + G+ +      G+  
Sbjct: 155 ELVGS-------GTVFGLRVRGESMIDAAICDGDVVVVRRQDEAHSGEIVAAMID-GEAT 206

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            KVL  R    + L   N  Y    ++  D   + +++
Sbjct: 207 VKVLRRR-DGHVFLEPRNPAYA--VIDGDDAVVLGKVV 241


>gi|312866496|ref|ZP_07726714.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311098190|gb|EFQ56416.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 230

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 61/220 (27%), Gaps = 15/220 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   L+ + +AR+ G+   S+   +      +    +   + KIL        
Sbjct: 5   EKLKNRRKELGLSQADVARQLGISRPSYFNWENGKT--KPNQKNWTKLSKILQVNPSYFL 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLL----------YFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              ++  +  +  +  +K+                  +G   +                 
Sbjct: 63  SEYEIVETYVQLNKSNKKKTVDFANRLLAEQGKMRSEAGRKLYAYKVYERLSAGTGYTYF 122

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            +              D        SM P Y  G+++++        G  +      G  
Sbjct: 123 NDGNYDEVFYDEKIDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AVYAVDWDGQT 181

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             K +       + L+S+N  Y        +    + +I+
Sbjct: 182 YIKRVYREPEG-LRLVSINQQYADKFAPYDENPRIVGKIV 220


>gi|269978126|ref|ZP_06185076.1| repressor LexA [Mobiluncus mulieris 28-1]
 gi|269933635|gb|EEZ90219.1| repressor LexA [Mobiluncus mulieris 28-1]
          Length = 278

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 63/242 (26%), Gaps = 32/242 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS------KRFGIEGRNRWPSTES 57
            +++ + + R++   +  PS   LA   GL   S  +       ++  +      P    
Sbjct: 35  QREVLDTLYRLSRELSYPPSVRELASAMGLSSPSSVQHHLEVLVEKGYLRRVPNQPRALE 94

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--- 114
             K+   T     ++        +   + ++         +           P G     
Sbjct: 95  FVKLPEGTPAATTEMAPHAPEAPKVYSETQRNNQNNSSLKTTENISATIHTIPIGVADTA 154

Query: 115 ----------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
                                + E        +    +    +    SM       GD +
Sbjct: 155 DSNAIPLVGRIAAGTPITAEELVEDTFMLPRRFTGAGELFMLEVNGESMRDAAIMNGDWV 214

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           ++ +  +   GD +      G+   K     +   + L+  N  +            + +
Sbjct: 215 VVRAQNEARNGDIV-AAMLEGEATVKEFSRDK-GHVWLLPHNPSFEPI--PGDGATILGK 270

Query: 218 IL 219
           ++
Sbjct: 271 VV 272


>gi|283850860|ref|ZP_06368146.1| putative phage repressor [Desulfovibrio sp. FW1012B]
 gi|283573783|gb|EFC21757.1| putative phage repressor [Desulfovibrio sp. FW1012B]
          Length = 229

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 12/212 (5%)

Query: 15  RMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNETICQL 72
           R A+   L + + LA   G+  ++  ++K+     +    +      +            
Sbjct: 21  RAAKAAGLTSQAELALLVGVHRSAVTQAKKKDAVPKAWILAVSRRAGVDADWLEFGRPDR 80

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                S    T+               +GG         G                G   
Sbjct: 81  RARATSGAGETDGGLFAGVPKVRARLSAGGGSFET---AGEVEAVYPFRRDWLRRKG--- 134

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                        SM P  R GD ++++          +        ++ K +  R   +
Sbjct: 135 NPASMVLMDVVGNSMEPEIRHGDTVLIDQGQTGVMAHAVYAVGVEDTVLVKRVEKRP-GA 193

Query: 193 IDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
           + L+S N  Y    +   +   +  I R+LW 
Sbjct: 194 LVLLSDNRDYAPLVLSGDELDALRVIGRVLWV 225


>gi|224282627|ref|ZP_03645949.1| LexA repressor [Bifidobacterium bifidum NCIMB 41171]
 gi|313139786|ref|ZP_07801979.1| LexA repressor [Bifidobacterium bifidum NCIMB 41171]
 gi|313132296|gb|EFR49913.1| LexA repressor [Bifidobacterium bifidum NCIMB 41171]
          Length = 238

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 65/221 (29%), Gaps = 17/221 (7%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
            + ++  + +AI +        PS   +    GL   S  K +   +E +     + +  
Sbjct: 24  LTERQHLVLDAIRKHIAEQGFAPSFREIGEAVGLKSPSSVKHQLHALERKGYLHISANKG 83

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + +    ++                +  + I      P          +    +  + + 
Sbjct: 84  RAIE-LYDSGTDSQTATVLPFPGDTEASESILASRDVPLVGRIAAGVPITAEQHIDDVMR 142

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P+  +          +    +    SM+      GD +++        GD +       
Sbjct: 143 LPQRLTGS-------GKLFMLEVHGDSMIDAAICDGDYVVIREQPSAVNGDIVAALLD-D 194

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K    +    I L+  N  Y     + +  + + +++
Sbjct: 195 EATIKTF-RKDNGHIWLIPHNPAYSPI--DGTHAQIMGKVV 232


>gi|21282955|ref|NP_646043.1| LexA repressor [Staphylococcus aureus subsp. aureus MW2]
 gi|49483531|ref|YP_040755.1| LexA repressor [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486183|ref|YP_043404.1| LexA repressor [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650343|ref|YP_186227.1| LexA repressor [Staphylococcus aureus subsp. aureus COL]
 gi|87161767|ref|YP_493934.1| LexA repressor [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195063|ref|YP_499863.1| LexA repressor [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|221142089|ref|ZP_03566582.1| LexA repressor [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|257425406|ref|ZP_05601831.1| LexA repressor [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428066|ref|ZP_05604464.1| LexA repressor [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430697|ref|ZP_05607079.1| LexA repressor [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433457|ref|ZP_05609815.1| LexA repressor [Staphylococcus aureus subsp. aureus E1410]
 gi|257436298|ref|ZP_05612345.1| LexA repressor [Staphylococcus aureus subsp. aureus M876]
 gi|258451738|ref|ZP_05699762.1| SOS regulatory LexA protein [Staphylococcus aureus A5948]
 gi|262048214|ref|ZP_06021101.1| LexA repressor [Staphylococcus aureus D30]
 gi|262051402|ref|ZP_06023625.1| LexA repressor [Staphylococcus aureus 930918-3]
 gi|282903920|ref|ZP_06311808.1| repressor LexA [Staphylococcus aureus subsp. aureus C160]
 gi|282905685|ref|ZP_06313540.1| LexA repressor [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908653|ref|ZP_06316474.1| LexA repressor [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910922|ref|ZP_06318725.1| LexA repressor [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914129|ref|ZP_06321916.1| LexA repressor [Staphylococcus aureus subsp. aureus M899]
 gi|282916601|ref|ZP_06324359.1| LexA repressor [Staphylococcus aureus subsp. aureus D139]
 gi|282919051|ref|ZP_06326786.1| LexA repressor [Staphylococcus aureus subsp. aureus C427]
 gi|282924234|ref|ZP_06331908.1| LexA repressor [Staphylococcus aureus subsp. aureus C101]
 gi|283770407|ref|ZP_06343299.1| LexA repressor [Staphylococcus aureus subsp. aureus H19]
 gi|283958104|ref|ZP_06375555.1| repressor LexA [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284024341|ref|ZP_06378739.1| LexA repressor [Staphylococcus aureus subsp. aureus 132]
 gi|293501157|ref|ZP_06667008.1| LexA repressor [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510118|ref|ZP_06668826.1| LexA repressor [Staphylococcus aureus subsp. aureus M809]
 gi|293526709|ref|ZP_06671394.1| LexA repressor [Staphylococcus aureus subsp. aureus M1015]
 gi|294848343|ref|ZP_06789090.1| LexA repressor [Staphylococcus aureus A9754]
 gi|295427854|ref|ZP_06820486.1| LexA repressor [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297208007|ref|ZP_06924438.1| repressor lexA [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297591185|ref|ZP_06949823.1| repressor lexA [Staphylococcus aureus subsp. aureus MN8]
 gi|300912091|ref|ZP_07129534.1| repressor lexA [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381085|ref|ZP_07363739.1| repressor LexA [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|25453101|sp|Q93SM0|LEXA_STAAW RecName: Full=LexA repressor
 gi|56748974|sp|Q6G9L9|LEXA_STAAS RecName: Full=LexA repressor
 gi|56749028|sp|Q6GH67|LEXA_STAAR RecName: Full=LexA repressor
 gi|61252317|sp|Q9L4P1|LEXA_STAAC RecName: Full=LexA repressor
 gi|123291804|sp|Q2FYU1|LEXA_STAA8 RecName: Full=LexA repressor
 gi|123749620|sp|Q2FH94|LEXA_STAA3 RecName: Full=LexA repressor
 gi|14132778|gb|AAK52314.1| LexA [Staphylococcus aureus]
 gi|21204394|dbj|BAB95091.1| SOS regulatory LexA protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241660|emb|CAG40348.1| DNA damage-inducible repressor [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244626|emb|CAG43057.1| DNA damage-inducible repressor [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284529|gb|AAW36623.1| LexA repressor [Staphylococcus aureus subsp. aureus COL]
 gi|87127741|gb|ABD22255.1| LexA repressor [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202621|gb|ABD30431.1| LexA repressor [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|257271863|gb|EEV04001.1| LexA repressor [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274907|gb|EEV06394.1| LexA repressor [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278825|gb|EEV09444.1| LexA repressor [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281550|gb|EEV11687.1| LexA repressor [Staphylococcus aureus subsp. aureus E1410]
 gi|257284580|gb|EEV14700.1| LexA repressor [Staphylococcus aureus subsp. aureus M876]
 gi|257860569|gb|EEV83393.1| SOS regulatory LexA protein [Staphylococcus aureus A5948]
 gi|259160777|gb|EEW45798.1| LexA repressor [Staphylococcus aureus 930918-3]
 gi|259163780|gb|EEW48335.1| LexA repressor [Staphylococcus aureus D30]
 gi|269940838|emb|CBI49220.1| LexA repressor [Staphylococcus aureus subsp. aureus TW20]
 gi|282313621|gb|EFB44014.1| LexA repressor [Staphylococcus aureus subsp. aureus C101]
 gi|282316861|gb|EFB47235.1| LexA repressor [Staphylococcus aureus subsp. aureus C427]
 gi|282319088|gb|EFB49440.1| LexA repressor [Staphylococcus aureus subsp. aureus D139]
 gi|282322197|gb|EFB52521.1| LexA repressor [Staphylococcus aureus subsp. aureus M899]
 gi|282325527|gb|EFB55836.1| LexA repressor [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327471|gb|EFB57763.1| LexA repressor [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330977|gb|EFB60491.1| LexA repressor [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595538|gb|EFC00502.1| repressor LexA [Staphylococcus aureus subsp. aureus C160]
 gi|283460554|gb|EFC07644.1| LexA repressor [Staphylococcus aureus subsp. aureus H19]
 gi|283790253|gb|EFC29070.1| repressor LexA [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920781|gb|EFD97844.1| LexA repressor [Staphylococcus aureus subsp. aureus M1015]
 gi|291096162|gb|EFE26423.1| LexA repressor [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467062|gb|EFF09580.1| LexA repressor [Staphylococcus aureus subsp. aureus M809]
 gi|294825143|gb|EFG41565.1| LexA repressor [Staphylococcus aureus A9754]
 gi|295128212|gb|EFG57846.1| LexA repressor [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887250|gb|EFH26152.1| repressor lexA [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297576071|gb|EFH94787.1| repressor lexA [Staphylococcus aureus subsp. aureus MN8]
 gi|300886337|gb|EFK81539.1| repressor lexA [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751171|gb|ADL65348.1| DNA damage-inducible repressor [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340394|gb|EFM06334.1| repressor LexA [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315194257|gb|EFU24650.1| LexA repressor [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198595|gb|EFU28924.1| LexA repressor [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140834|gb|EFW32681.1| repressor LexA [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143898|gb|EFW35670.1| repressor LexA [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314018|gb|AEB88431.1| LexA repressor [Staphylococcus aureus subsp. aureus T0131]
          Length = 207

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 32/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +    +I+  I ++ +     PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +   ++     +++  +       K      +                   N 
Sbjct: 61  TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +PE  +  +      +          SM       GD +I+ S      GD ++ 
Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 159 MTEEDEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VAVIGKVI 201


>gi|152976068|ref|YP_001375585.1| LexA repressor [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189046529|sp|A7GR32|LEXA_BACCN RecName: Full=LexA repressor
 gi|152024820|gb|ABS22590.1| SOS-response transcriptional repressor, LexA [Bacillus cytotoxicus
           NVH 391-98]
          Length = 206

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 61/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 1   MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E   ++            K    +P+                    + 
Sbjct: 61  TK--PRAIEILGEERIEISTQSVVQVPIVGKVTAGLPI----------------TAVESV 102

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++      N G+ ++ 
Sbjct: 103 EEHFPLPASII------AGADQVFMLRISGDSMIEAGIFDGDLVVVRQQHSANNGEIVVA 156

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       +    +  I +++
Sbjct: 157 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILNT--VSVIGKVI 199


>gi|332702887|ref|ZP_08422975.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay]
 gi|332553036|gb|EGJ50080.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay]
          Length = 247

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 23/227 (10%)

Query: 13  IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           + R+     L T + LA + G+   +   +KR        +     ++++     E+   
Sbjct: 19  LRRIMYATGLRTQAQLAERLGVRRAAITDAKRRKAVPAEWFLKLCRMYQLNPVWLESGLG 78

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---------GFFDSGVFPTG-----NKWNT 117
            + +     +   ++ K  P+L                       + P G          
Sbjct: 79  PMRVGEEAPQPEPQRHKGRPVLNDSEGPFHLDEFAFIPKVTAVPRMGPEGLETDAQVEGY 138

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
               +      G  +   Q    +    SM P  R GD ++L+ +       ++ +    
Sbjct: 139 FAFRQDWLRRKGNVS---QMCLMRVAGDSMEPTLRDGDAVLLDQSQTEVVYGKIYVVGID 195

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARILW 220
             +V K L  R    + L+S N   YP   V +++   +  + R++W
Sbjct: 196 EGVVVKRLDKRP-GKLVLVSDNRQVYPPLEVALNESVSVRIVGRVIW 241


>gi|312965228|ref|ZP_07779464.1| repressor protein CI [Escherichia coli 2362-75]
 gi|312290112|gb|EFR17996.1| repressor protein CI [Escherichia coli 2362-75]
          Length = 237

 Score = 92.1 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 66  --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVMGKVI-ASQ 230


>gi|310287087|ref|YP_003938345.1| SOS-response transcriptional repressor, LexA [Bifidobacterium
           bifidum S17]
 gi|311063952|ref|YP_003970677.1| LexA repressor [Bifidobacterium bifidum PRL2010]
 gi|309251023|gb|ADO52771.1| SOS-response transcriptional repressor, LexA [Bifidobacterium
           bifidum S17]
 gi|310866271|gb|ADP35640.1| LexA repressor [Bifidobacterium bifidum PRL2010]
          Length = 233

 Score = 92.1 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 65/221 (29%), Gaps = 17/221 (7%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
            + ++  + +AI +        PS   +    GL   S  K +   +E +     + +  
Sbjct: 19  LTERQHLVLDAIRKHIAEQGFAPSFREIGEAVGLKSPSSVKHQLHALERKGYLHISANKG 78

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + +    ++                +  + I      P          +    +  + + 
Sbjct: 79  RAIE-LYDSGTDSQTATVLPFPGDTEASESILASRDVPLVGRIAAGVPITAEQHIDDVMR 137

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P+  +          +    +    SM+      GD +++        GD +       
Sbjct: 138 LPQRLTGS-------GKLFMLEVHGDSMIDAAICDGDYVVIREQPSAVNGDIVAALLD-D 189

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K    +    I L+  N  Y     + +  + + +++
Sbjct: 190 EATIKTF-RKDNGHIWLIPHNPAYSPI--DGTHAQIMGKVV 227


>gi|281356220|ref|ZP_06242713.1| transcriptional repressor, LexA family [Victivallis vadensis ATCC
           BAA-548]
 gi|281317589|gb|EFB01610.1| transcriptional repressor, LexA family [Victivallis vadensis ATCC
           BAA-548]
          Length = 209

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 67/227 (29%), Gaps = 32/227 (14%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR--NRWPS 54
           M S + K+  I E I+   +R  + P+   +A    +  ++     R   + +  +R   
Sbjct: 1   MKSLTEKQKNILEFIEEFLDREGMAPTVYEIADNFQIKTSTVFAHLRALQKKKQLSRSSK 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             SI  +  A          L                + +       G         G  
Sbjct: 61  ARSISLMSRARGSRTMPNCALAIPLLGRVNAGLPSESIEFKE-----GEVCISNTMLGEH 115

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAI-QVNCGDRLL 172
                                Q    + Q  SM       GDI+I      +   GD ++
Sbjct: 116 ------------------TPEQMFALRVQGESMRDLGIYDGDIVICGQGASKPRPGDIVV 157

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K    + G  I+L   N  + V    ++D+    +++
Sbjct: 158 AL-VQGEVTVKSYFPKTGGRIELRPANPDFSVQVYPIADVTIQGKVV 203


>gi|325001423|ref|ZP_08122535.1| SOS-response transcriptional repressor, LexA [Pseudonocardia sp.
           P1]
          Length = 244

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 23/220 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            +K+   I    +R+   PS   +    GL  TS    +   +E +    R P+      
Sbjct: 36  QRKVLSVIRDWVDRYGYPPSVREIGDAVGLTSTSSVHHQLRTLERKGFLRRDPNRTRAVD 95

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + +          D      R+       +PLL    +G                +   +
Sbjct: 96  VRSPEQAAAGDGADADTEAVRSERPAPAFVPLLGDIAAGGPI------LAEQAVQDVFPL 149

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P            +        +  SM+      GD +++        G+ ++     G+
Sbjct: 150 PREIVG-------EGTLFLLNVKGDSMVDAAITDGDWVVVRQQPVAEQGE-VVAAMIDGE 201

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +    I LM  N  Y        D   + R++
Sbjct: 202 ATVKTFRRK-DGHIWLMPANEAYDPI--PGDDASILGRVV 238


>gi|322373053|ref|ZP_08047589.1| putative repressor protein [Streptococcus sp. C150]
 gi|321278095|gb|EFX55164.1| putative repressor protein [Streptococcus sp. C150]
          Length = 229

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 16/222 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68
            + +  + E   ++ + +A+  G+  +S+   +    +   +  S    +F +      +
Sbjct: 4   GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63

Query: 69  ICQLLDLPFSDGRTTEK----------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +++++         +          +E+E      P      +        G  +   
Sbjct: 64  EHEIVEVYLELNEENRQEALRLTKALLEEQEAEKQKAPVIPLYSYKVFERLSAGTGYTY- 122

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +              D        SM P Y  G+++++        G  +      G
Sbjct: 123 -FGDGNYDEVFYDEELDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AVYAVDWDG 180

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +       + L+SLN  Y        +    I +I+
Sbjct: 181 QTYIKKVYREEEG-LRLVSLNKRYGDKFAPYDEDPRIIGKIV 221


>gi|312959301|ref|ZP_07773818.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
           WH6]
 gi|311286018|gb|EFQ64582.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
           WH6]
          Length = 244

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 33/236 (13%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + +R  ++P+ L R+ G+  ++ ++       G+   PS + I ++      +  QL
Sbjct: 10  LRELLDRDRISPTELYRRTGVPQSTLSRIL----SGKIVDPSDKHISRVAEYFRVSTDQL 65

Query: 73  LDL------PFSDGRTTEKKEKEIPLLYF-----PPSGSGGFFDSGVFPTGNKWNTVGVP 121
                              + K+I L            S  F        G+    +   
Sbjct: 66  RGRVALGVSREEGRDPMHSELKDISLWDDDTPVNDDEVSIPFLREVELAAGSGRFVIEES 125

Query: 122 EIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---- 171
           E  S   G  +++              +  SMLP+ R G  + +N+      GD +    
Sbjct: 126 EKASLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKSAI-GDIVDGDL 184

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIEWIARILWA 221
                 G +  K L       I L S N             ++   I  +  + W 
Sbjct: 185 YAINHNGQLRVKQLYRLPSG-IRLRSFNRDEHPDEDYSFQDIQDEQISILGHVFWW 239


>gi|304316828|ref|YP_003851973.1| transcriptional repressor, LexA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778330|gb|ADL68889.1| transcriptional repressor, LexA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 207

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 40/225 (17%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPST 55
           S   ++I E I     R    PS   + +  GL  TS      ++ ++ G     R P+ 
Sbjct: 8   SLKQQEIIEFIKSEINRKGYPPSVREIGKAVGLKSTSTVHGHLSRLEKKGYI--RRDPTK 65

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
               ++L      +  ++ LP     T                              N  
Sbjct: 66  PRAIEVLNNDKRDLSDVIKLPVIGKVTAGSPI---------------------LAVENID 104

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
               +P        I   + +    K +  SM+      GD +I+      + GD ++  
Sbjct: 105 EYYSIPRDL-----IVGYEGESFILKVRGESMINAGILDGDYIIVRKQSYADNGDIIVAL 159

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K         I L   N       V+   +  + +++
Sbjct: 160 I-EDEATVKRFYKESD-HIRLQPENPSMDPIIVDN--VMVLGKVV 200


>gi|160931490|ref|ZP_02078886.1| hypothetical protein CLOLEP_00323 [Clostridium leptum DSM 753]
 gi|156869555|gb|EDO62927.1| hypothetical protein CLOLEP_00323 [Clostridium leptum DSM 753]
          Length = 196

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 55/224 (24%), Gaps = 40/224 (17%)

Query: 1   MTSF--SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M     S +KI + +     +  + PS   +    GL  TS                +  
Sbjct: 1   MKKLNKSQQKILDYLRE-RSQDGVPPSVREICAATGLKSTS----------------TVH 43

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +  K L                     E+  +        P          +    +   
Sbjct: 44  AHLKALEENGFISRDAGLNRAIHISGVERSVQ-------VPVLGRVTAGLPILAVEDVEG 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            + + E +           +    +    SM+      GD ++ +       GD ++   
Sbjct: 97  YLPINESQCRGR-------ELFALRVVGESMINAGILDGDYVVAHKTPVAENGDIVVAL- 148

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   K         I L   N  +         +  + R++
Sbjct: 149 LEDEATVKRFFR-EDGHIRLQPENPAFQPII--SEQVVILGRVV 189


>gi|120598006|ref|YP_962580.1| putative prophage repressor [Shewanella sp. W3-18-1]
 gi|153822275|ref|ZP_01974942.1| HTH-type transcriptional regulator for conjugative element SXT
           [Vibrio cholerae B33]
 gi|197286269|ref|YP_002152141.1| phage repressor [Proteus mirabilis HI4320]
 gi|229508706|ref|ZP_04398199.1| HTH-type transcriptional regulator for conjugative element SXT
           [Vibrio cholerae B33]
 gi|229608739|ref|YP_002879387.1| HTH-type transcriptional regulator for conjugative element SXT
           [Vibrio cholerae MJ-1236]
 gi|254850989|ref|ZP_05240339.1| transcriptional repressor [Vibrio cholerae MO10]
 gi|255743882|ref|ZP_05417838.1| putative prophage repressor [Vibrio cholera CIRS 101]
 gi|55976715|sp|Q79RI9|TR96_PRORE RecName: Full=HTH-type transcriptional regulator for conjugative
           element R391; AltName: Full=ORF-96 protein
 gi|55976716|sp|Q79S39|TRSX_VIBCH RecName: Full=HTH-type transcriptional regulator for conjugative
           element SXT
 gi|55976733|sp|Q8GJK1|TRME_SHEPU RecName: Full=HTH-type transcriptional regulator for conjugative
           element pMERPH
 gi|19882269|gb|AAM01213.1| repressor protein [IncJ plasmid R391]
 gi|20095172|gb|AAM08038.1| putative transcriptional regulator [Providencia rettgeri]
 gi|21885286|gb|AAL59692.1| transcriptional repressor [Vibrio cholerae]
 gi|24496497|gb|AAN60107.1| putative regulatory protein [Shewanella putrefaciens]
 gi|77543199|gb|ABA87012.1| transcriptional repressor [Vibrio cholerae]
 gi|120558099|gb|ABM24026.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24
           [Shewanella sp. W3-18-1]
 gi|126520171|gb|EAZ77394.1| HTH-type transcriptional regulator for conjugative element SXT
           [Vibrio cholerae B33]
 gi|172051618|emb|CAQ35014.1| SetR [Photobacterium damselae subsp. piscicida]
 gi|194683756|emb|CAR44790.1| putative phage repressor [Proteus mirabilis HI4320]
 gi|229354230|gb|EEO19160.1| HTH-type transcriptional regulator for conjugative element SXT
           [Vibrio cholerae B33]
 gi|229371394|gb|ACQ61817.1| HTH-type transcriptional regulator for conjugative element SXT
           [Vibrio cholerae MJ-1236]
 gi|254846694|gb|EET25108.1| transcriptional repressor [Vibrio cholerae MO10]
 gi|255738513|gb|EET93902.1| putative prophage repressor [Vibrio cholera CIRS 101]
 gi|259156135|gb|ACV96083.1| HTH-type transcriptional regulator for conjugative element R391
           [Providencia alcalifaciens Ban1]
 gi|259156257|gb|ACV96204.1| HTH-type transcriptional regulator for conjugative element R391
           [Vibrio cholerae Ban5]
 gi|259156299|gb|ACV96245.1| HTH-type transcriptional regulator for conjugative element R391
           [Vibrio cholerae Ind4]
 gi|259156467|gb|ACV96412.1| HTH-type transcriptional regulator for conjugative element R391
           [Vibrio cholerae Ind5]
 gi|259156532|gb|ACV96476.1| HTH-type transcriptional regulator for conjugative element R391
           [Vibrio cholerae Mex1]
 gi|259156653|gb|ACV96596.1| HTH-type transcriptional regulator for conjugative element R391
           [Vibrio fluvialis Ind1]
          Length = 215

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 29/227 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + S     E ++   +   +T S LAR+ G+   S ++          R   T  I +
Sbjct: 1   MKTLS-----ERLNHALQLTGVTQSELARRIGIKQQSISQICSGKS---ARSRYTMQIAE 52

Query: 61  ILAATNETICQLLDLPF---SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
            L      +            +       +  IPL+ +  +G       G F   +    
Sbjct: 53  ALRVNAHWLATGDGEIGLGVGNVEVGPDIKGRIPLINWVQAGDWTEIAEG-FAHEDAEEW 111

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDRLL 172
             V                    + +  SM          +G +++++  +  + G  ++
Sbjct: 112 REVTGKAHEG---------CFALRVKGDSMENPSGKKSIPEGAVIVVDPELPYSSGSLVV 162

Query: 173 IK-PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +   + +   K L+    +   L  LN  YP   +  +    I  +
Sbjct: 163 ARLDDSKEATFKQLVIDGEQKY-LKPLNPQYPAIPINGN-CTIIGVV 207


>gi|332701820|ref|ZP_08421908.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay]
 gi|332551969|gb|EGJ49013.1| putative phage repressor [Desulfovibrio africanus str. Walvis Bay]
          Length = 210

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 59/213 (27%), Gaps = 23/213 (10%)

Query: 20  HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD 79
             +T   L++K G+  ++    ++       ++P  E +  +      +   LL      
Sbjct: 3   REMTQQDLSQKLGVSLSTVQNFEKG------QFPKGEQLIGLAEVLETSADWLLLGREEP 56

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIY 131
           G   E+  +   +   P               G+                       G  
Sbjct: 57  GHRYERPMEVPDVTCLP-GYEYVKKVRARLSAGSGSLLTSATIEGYYAFRSDWLRRRG-- 113

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
                         SM P     D ++++   +     +        ++  K +      
Sbjct: 114 -NPKSMVLMAVTGDSMSPEIMDEDTVLIDEGQKDIYVGKKYAIALDEEVYIKYIDKVP-G 171

Query: 192 SIDLMSLNCCYPVDTVEMSD----IEWIARILW 220
              L S+N  Y    V++ D    +  I R++W
Sbjct: 172 KYILRSINPLYKPIEVDLFDNSKSVRLIGRMIW 204


>gi|284045919|ref|YP_003396259.1| transcriptional repressor, LexA family [Conexibacter woesei DSM
           14684]
 gi|283950140|gb|ADB52884.1| transcriptional repressor, LexA family [Conexibacter woesei DSM
           14684]
          Length = 204

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 64/227 (28%), Gaps = 37/227 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53
           M   +   ++I+E I + + RH   P+   + +  GL  +S   +    +E      R P
Sbjct: 1   MVDLTKRQQEIFEFIKQYSSRHGYPPTVRDIGKAVGLASSSTVHAHLANLEKVGLLRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           S     ++L                         K I      P          V     
Sbjct: 61  SKPRAIELLD------------------KAVDGIKSIVKPAGLPLVGQVQAGQPVLAEEE 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +  P +     G Y         + +  SM        D++++        G+ ++
Sbjct: 103 IEDYIETPAVAGGAEGEY-------LLRVRGESMKDAGILPDDLVVVRRQETARDGEIVV 155

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         I L   N           +++ + +++
Sbjct: 156 AL-VGEEATVKRFFQETD-HIRLQPENSAMEPI--RTKEVQILGKVI 198


>gi|145224537|ref|YP_001135215.1| LexA repressor [Mycobacterium gilvum PYR-GCK]
 gi|315444868|ref|YP_004077747.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp.
           Spyr1]
 gi|189046541|sp|A4TCN9|LEXA_MYCGI RecName: Full=LexA repressor
 gi|145217023|gb|ABP46427.1| SOS-response transcriptional repressor, LexA [Mycobacterium gilvum
           PYR-GCK]
 gi|315263171|gb|ADT99912.1| SOS-response transcriptional repressor, LexA [Mycobacterium sp.
           Spyr1]
          Length = 232

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 57/219 (26%), Gaps = 23/219 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            + I + I          PS   +    GL  TS   ++ +    +G  R          
Sbjct: 26  QRTILDVIRASVTTRGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGYLR-------RDA 78

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                  +    D P     T       +P   F P          +       +   +P
Sbjct: 79  NRPRAVDVRAADDHPTPIVATEVAGSDALPEPTFVPVLGRIAAGGPILAEEAVEDVFPLP 138

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       +      K    SM+      GD +++      + GD +      G+ 
Sbjct: 139 RELVG-------EGSLFLLKVVGESMVDAAICDGDWVVVRQQSVADNGDIVAAMID-GEA 190

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + LM  N  +       +D   + +++
Sbjct: 191 TVKTFKR-TKGQVWLMPHNPAFDPI--PGNDAAILGKVV 226


>gi|238926203|ref|ZP_04657963.1| repressor lexA [Selenomonas flueggei ATCC 43531]
 gi|238885883|gb|EEQ49521.1| repressor lexA [Selenomonas flueggei ATCC 43531]
          Length = 214

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 55/222 (24%), Gaps = 34/222 (15%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58
           ++    +I + I          PS   +    GL   ++ ++                  
Sbjct: 17  STRRQSEILDYIKEFLVEKGYPPSVREIGTAVGLKSSSTVHRYLS--------------- 61

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +L                D        + IP+               +    N  +  
Sbjct: 62  --MLEENGMIRRDATKPRAIDIMGENPWGRTIPVPLV----GVVTAGEPILAEQNVEDVF 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P                   + Q  SM+ +    GD +++      N GD ++     
Sbjct: 116 SFPRGLLGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALVNG 169

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                K     +   I L   N          +D++ + +++
Sbjct: 170 EAATVKRFFREK-TCIRLQPENDAMEPFY--ETDVQILGKVI 208


>gi|218885814|ref|YP_002435135.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756768|gb|ACL07667.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 238

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 63/240 (26%), Gaps = 35/240 (14%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I+ +  +  ++    A + G+   +  + ++       R P +  +  I       
Sbjct: 2   IGRRIEEIRGK--VSRESFAAELGVHAQTLARYEKGE-----RLPDSTFLENISKRFGIA 54

Query: 69  ICQLLDLPFSDGRTTEKKE-----------------KEIPLLYFPPSGSGGFFDSGVFPT 111
              LL            +                  +   +                   
Sbjct: 55  PAWLLLGEGPKHSAERPESLNTGTPFAPPVLTPATGESHVIECTDCQIMLVPMVEARLSA 114

Query: 112 GNKWNTV--GVPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
           G     V   V    +            +     +    SM P  +  D+++++ + +V 
Sbjct: 115 GTGSFEVGEDVERRYAFRTDFLMRKGQPSSMVLMRVTGDSMEPDIKHNDVVLIDQSQRVP 174

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-----SDIEWIARILWA 221
               L        +  K + +     + L S N  YP   V+      + I  I R +W 
Sbjct: 175 RPGLLYAVGVEDLVYLKSVNAEP-GKLVLSSYNPDYPPIEVDARGDLSNGIRIIGRAVWV 233


>gi|309805572|ref|ZP_07699616.1| putative repressor LexA [Lactobacillus iners LactinV 09V1-c]
 gi|308165111|gb|EFO67350.1| putative repressor LexA [Lactobacillus iners LactinV 09V1-c]
          Length = 239

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 58/220 (26%), Gaps = 25/220 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K+I   + +    H +T + LA K+ +  T+ +   R          + E +   L   
Sbjct: 14  RKEISSNLKKFM--HGMTQADLAEKSDIPLTTLSGYLREKST--PNSGNLEKLAIALNVK 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEI--------------PLLYFPPSGSGGFFDSGVFPT 111
              I              +    E                ++   P          +   
Sbjct: 70  KSDIDPRYTFTDIMDFVEKAPLGEYISPVSNVEYLYNTDTVVKQIPLLGDIACGDPITAD 129

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR- 170
            N  + +        +             KT+  SM P    G I+I+     V  G+  
Sbjct: 130 ENIEDYIP-----ETYTRGNVPSGTLFALKTKGHSMEPTIPDGSIVIIRQQPNVEDGEIA 184

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            ++         K +      ++ L   N  Y    +  +
Sbjct: 185 AVLVDDDARATLKRI-KHSNDTVILQPDNREYDPIVLTPN 223


>gi|169827252|ref|YP_001697410.1| LexA repressor [Lysinibacillus sphaericus C3-41]
 gi|229621221|sp|B1HRJ5|LEXA_LYSSC RecName: Full=LexA repressor
 gi|168991740|gb|ACA39280.1| LexA repressor [Lysinibacillus sphaericus C3-41]
          Length = 205

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 58/227 (25%), Gaps = 37/227 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           M   S   + I   I          PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MKKVSKRQEDILAFIKDEVRAKGYPPSVREIGEAVGLASSSTVHGHLARLEQKGFIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL                      ++  +   +   P        S +    N
Sbjct: 61  TKPRAIEILEP--------------------EESIQKQHVIHVPLVGKVTAGSPITAIEN 100

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +P+             Q    +    SM       GD++I+      N GD ++
Sbjct: 101 IEEYFPLPDTYGTSED------QLFMLEIMGESMIEAGILDGDLVIVKQKSTANNGDIVV 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       V    +    +++
Sbjct: 155 AMTAEDEATVKRFFKEKN-HFRLQPENSSMEPIIV--DQVSIGGQVV 198


>gi|332686910|ref|YP_004456684.1| repressor protein [Melissococcus plutonius ATCC 35311]
 gi|332370919|dbj|BAK21875.1| repressor protein [Melissococcus plutonius ATCC 35311]
          Length = 239

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 25/241 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M   S K I   I    ER NLT   LA        S ++ +    +             
Sbjct: 1   MMDLS-KFIGNKIKEYRERRNLTQEDLADMLNTTRQSISRYETGERKANQDMLFKLSEIY 59

Query: 54  -----------STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
                      S +SI  I     +   + +     +   ++K+ K+  ++    +    
Sbjct: 60  EISINDFFPSNSKKSITTIYNELEQLRQKKVYNYAEEQLESQKQAKQSNVIPLNSNNDPL 119

Query: 103 FFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
                                 +           Q  D        SM P+++  +++ +
Sbjct: 120 TSFDWYGHASAVTGEFLDGNENKTTIQLPKKDIPQNADFALTVNGDSMKPVFKNHEMIFV 179

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
                +  G   ++    G+   K +       + L+SLN  Y    ++ +  I+ I  +
Sbjct: 180 ERTTDLPSGSIGIVVVD-GEAFIKKIY-INDDCMTLVSLNPKYEDKVIKDAQFIKVIGHV 237

Query: 219 L 219
           +
Sbjct: 238 I 238


>gi|282920607|ref|ZP_06328328.1| LexA repressor [Staphylococcus aureus A9765]
 gi|282594269|gb|EFB99256.1| LexA repressor [Staphylococcus aureus A9765]
          Length = 207

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 32/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +    +I+  I ++ +     PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +   ++     +++  +       K      +                   N 
Sbjct: 61  TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +PE  +  +      +          SM       GD +I+ S      GD ++ 
Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 159 MTEEDEATVKRFYKEKN-RYRLQPENSTMEPIYLDS--VAVIGKVI 201


>gi|289168608|ref|YP_003446877.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288908175|emb|CBJ23017.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 228

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 53/218 (24%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKIL------- 62
           E +    +   LT   +A + G+   +++  +R   E      S  E+I K+        
Sbjct: 5   EKLKARRKELKLTQKEIAEQLGVSFQAYSAWERGIKEPSKEKVSQLENILKVAKGYFTQI 64

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                                    +E  +          +                  +
Sbjct: 65  EIVRLYHSLSKQGKEKVVLYARDLAQEEQVQKVIAIPERLYEYRVYERMSAGIGASVYDD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 QNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           K +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 KRVYREENG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220


>gi|169334407|ref|ZP_02861600.1| hypothetical protein ANASTE_00807 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259124|gb|EDS73090.1| hypothetical protein ANASTE_00807 [Anaerofustis stercorihominis DSM
           17244]
          Length = 213

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 27/220 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
             KI + I    +     PS   +    GL  TS   N+      +G   R  S +   +
Sbjct: 9   QIKILDFIKAELKDKGYPPSVREIGSNVGLTSTSSVHNQLNNLEKKGYIKRGVSKQRAIE 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  +  T  +              +   +  +   P          +    N  +T  +
Sbjct: 69  VVGFSPFTKDENQV----------DEVSLVDDVINVPIIGNVAAGYPILAEENVEDTYPL 118

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P         +  + +      +  SM+      GD++I+      N  D ++      +
Sbjct: 119 PSS-------FVGKKECFMLHVKGDSMINAGILNGDLVIVKKQNTANDHDIVVALID-DE 170

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +   + L   N  Y       +D++ + +++
Sbjct: 171 ATVKTFFKEQN-RVRLQPENPVYDPIY--STDLKILGKVI 207


>gi|212703359|ref|ZP_03311487.1| hypothetical protein DESPIG_01402 [Desulfovibrio piger ATCC 29098]
 gi|212673205|gb|EEB33688.1| hypothetical protein DESPIG_01402 [Desulfovibrio piger ATCC 29098]
          Length = 226

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 16/202 (7%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
             LA + G+  T+  + +   +      P  E   ++ AA   ++  LL    S   T +
Sbjct: 31  QDLAAQVGVSLTTIQQYENGQL------PKGEFAVRLGAALRCSLDWLLAGQGSVEGTLQ 84

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
            +   + ++    +       S      +        E      G     +     +   
Sbjct: 85  DQWAGLVMVPMVEARLSAGTGSFETSA-DVVRHYAFREDFLRRKGS---PSHMALLRVSG 140

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P     D+++++ + +     R+        +  KV+ +     + L S N  YP 
Sbjct: 141 DSMEPRICHNDVVLVDQSQKDPVPGRIYAVSVEDLVYLKVVNAMP-GRLILSSYNPAYPP 199

Query: 205 DTVEMSD-----IEWIARILWA 221
                +D     +  + R +W 
Sbjct: 200 IEACTTDQLADLVRIVGRAVWV 221


>gi|257470636|ref|ZP_05634726.1| peptidase S24 S26A and S26B [Fusobacterium ulcerans ATCC 49185]
 gi|317064842|ref|ZP_07929327.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690518|gb|EFS27353.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 259

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 14/223 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               K+  + ++    ++      ++R+ G+   +    K        R P  + I K +
Sbjct: 1   MEKKKEFSKYLENFMRKNGYNLEQISRETGIPVATIGHYKTG-----RRTPKNDFIDKFV 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---GGFFDSGVFPTGNKWNTVG 119
           +  N    +  ++  +       +  +  +L                     G    T+ 
Sbjct: 56  SGFNLNSQEKNEITMAIAIDRTPEVIKDNILELKNVKPIKLMEVPLFSSVSAGLGRETIA 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP---R 176
            P                     Q  SM      G I+++N+ +    G+  +       
Sbjct: 116 EPIDFISIPKT--AGNNVVAILVQGNSMEDTILDGSIVVVNTELMPEIGEIGVFLTKGSD 173

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             D + K L  +      L S N  Y    +E SDI    +++
Sbjct: 174 HADGLVKRLKYK-NGEYVLESDNKEYEDLRIENSDITAYGKVI 215


>gi|66046048|ref|YP_235889.1| peptidase [Pseudomonas syringae pv. syringae B728a]
 gi|63256755|gb|AAY37851.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Pseudomonas
           syringae pv. syringae B728a]
          Length = 216

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 30/229 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+ +       +        +T   LA  AG++  + ++ +        +     ++ K
Sbjct: 1   MTTLAQ-----RLKLARAHAKITQRKLAELAGVEQPAISQMESGKT---LKSAHLVALAK 52

Query: 61  ILAATNET-----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 +           +    +      +    P++ +  +G          P G   
Sbjct: 53  ACGVNADWLATGTGQMASEQSNVEIVEQPSRMYRYPVVSWVAAGEWSEAVEPYAP-GAAD 111

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRL 171
                          Y  +        +  SM     P   +G  +++++  +V  G  +
Sbjct: 112 EY---------DVSDYKAKGPAFWLMVKGDSMTAPTAPSIPEGSQILVDTRAEVLPGKLV 162

Query: 172 L-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +     + +   K L+   G    L  LN  YP       D   I  ++
Sbjct: 163 IAKLGGSNEATFKKLVEDGGVRY-LKPLNSAYPTVQCS-DDCRIIGVVV 209


>gi|191173111|ref|ZP_03034644.1| transcriptional activator-regulatory protein [Escherichia coli F11]
 gi|190906656|gb|EDV66262.1| transcriptional activator-regulatory protein [Escherichia coli F11]
          Length = 212

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 23/211 (10%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           ++   LA+ +G+   +  +       G  +      I +I  A       L         
Sbjct: 1   MSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIANALGVRTEWLSSGIGPMRN 54

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--- 138
             ++  K                       G         E+       +          
Sbjct: 55  DGQQSGKPAVSY---SKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGR 111

Query: 139 ------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                     +  SM      GD+L ++  ++   GD +           K L   +   
Sbjct: 112 KAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-K 170

Query: 193 IDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
           + ++S N  Y     +E  +   +    +++
Sbjct: 171 LLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 201


>gi|307126198|ref|YP_003878229.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B]
 gi|306483260|gb|ADM90129.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B]
 gi|321157139|emb|CBW39125.1| Putative phage repressor protein [Streptococcus phage 23782]
 gi|321157188|emb|CBW39173.1| Putative phage repressor protein [Streptococcus phage 11865]
          Length = 244

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 68/241 (28%), Gaps = 35/241 (14%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E I +  +   ++   LA   G+  ++  + ++  IE        E + KI    N 
Sbjct: 2   NVGERIKQRRKALKMSADELAESVGVSRSTIFRYEKGDIEKV----GPEVLKKIADKLNV 57

Query: 68  TICQLLDLPFSDGRTTEK----------------KEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +   L+    +                         ++  +L +         +  +   
Sbjct: 58  SPGDLMGWEDNQQELKIPTSPLVHKITEKVVKLSTPRKQKVLNYANEQLKEQNNKVITIE 117

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILIL 159
              +      ++ +     Y                 D        SM P Y  G+++++
Sbjct: 118 EKLFEYRVFEKLSAGTGFSYFNDGNYDTVFYDKDLDHDFASWVFGDSMEPKYMNGEVVLI 177

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218
                   G  +      G    K +   +   + L+S+N  Y         D   I +I
Sbjct: 178 KETGFDYDG-AIYAVDWDGQTYIKKVYKEKDG-LRLVSINNKYKDKFAPFEEDPRIIGKI 235

Query: 219 L 219
           +
Sbjct: 236 V 236


>gi|329770542|ref|ZP_08261920.1| hypothetical protein HMPREF0433_01684 [Gemella sanguinis M325]
 gi|328836291|gb|EGF85960.1| hypothetical protein HMPREF0433_01684 [Gemella sanguinis M325]
          Length = 215

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 10/208 (4%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            +  +  N+  + LAR   + P+S +   +         P  + +  I          L+
Sbjct: 10  KQCLKEKNIKQAELARSTKITPSSISDWSKGKYV-----PKRDKLLAIAEFLEVNPDWLV 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
               +   T         +               +  T    + V + E    H  I   
Sbjct: 65  GESDNMEITPLPTSTNNHINEDTEELIDNISKLPILGTICAGDGVYIEEEYDEHIFIDQG 124

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191
              D   + +  SM       GD++ +     V  G    +      +   K +  +   
Sbjct: 125 MRADFALRVKGDSMIEAGIFDGDLVFIRQQSSVRNGKIAAVRLTEWNEASLKKIFVKNDN 184

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            I L   N  +        ++E I   +
Sbjct: 185 VI-LYPCNPEFEPIV--TRNVEIIGECV 209


>gi|215485810|ref|YP_002328241.1| predicted repressor protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218704626|ref|YP_002412145.1| repressor protein of bacteriophage origin [Escherichia coli UMN026]
 gi|293404507|ref|ZP_06648501.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298380285|ref|ZP_06989890.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300896678|ref|ZP_07115193.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|215263882|emb|CAS08220.1| predicted repressor protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218431723|emb|CAR12605.1| repressor protein of bacteriophage origin [Escherichia coli UMN026]
 gi|291429093|gb|EFF02118.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298279983|gb|EFI21491.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300359470|gb|EFJ75340.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
          Length = 235

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 15/211 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            K+  + + +  +   L        +AR   L     +K      E   R     ++ K 
Sbjct: 8   RKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFN--AESLPRQEKMNALAKF 65

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L           D+ +    T+     +            G               + + 
Sbjct: 66  LNV---------DVVWLQHGTSLNGANDEDTFSIVGKLKKGLVRVVGEAILGVDGAIEMT 116

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E R     IY+        + +  SM P  + G+ +++    +V  GD + ++   G  +
Sbjct: 117 EERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGEYVLIEPNTKVFPGDEVFVRTIEGHNM 176

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
            KVL   R       S+N  +   T+    +
Sbjct: 177 IKVLGYDRDGEYQFTSINQDHRPITLPYHQV 207


>gi|255326350|ref|ZP_05367434.1| repressor LexA [Rothia mucilaginosa ATCC 25296]
 gi|255296567|gb|EET75900.1| repressor LexA [Rothia mucilaginosa ATCC 25296]
          Length = 224

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 18/219 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +KI +AI    E+    PS   +    GL   +S  ++  R    G  R      + + 
Sbjct: 13  QQKILDAIRTEIEQKGYPPSMRQIGDMVGLASLSSVTHQLGRLETMGYIR--RDPKLPRA 70

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +   +E    +     S        E     L   P          +    +  + + +P
Sbjct: 71  IEVLDENGVGIHGSASSSLPELPNFEVGDEDLVPVPLVGRIAAGGPITAEQSVEDVLALP 130

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +    K +  SM+      GD +++      + GD +       + 
Sbjct: 131 RQLVGS-------GKLFMLKVKGDSMIDAAICDGDWVVVREQHTADNGDIVAALLD-DEA 182

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             KV   +      LM  N  Y            + +++
Sbjct: 183 TVKVF-RQVDGHTWLMPRNSNYEPIM--GDRATVMGKVV 218


>gi|160875085|ref|YP_001554401.1| XRE family transcriptional regulator [Shewanella baltica OS195]
 gi|160860607|gb|ABX49141.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
          Length = 229

 Score = 91.4 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 65/227 (28%), Gaps = 23/227 (10%)

Query: 9   IWEAID----------RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           IW  +D             +   +T   LA +  +   +  +        + R P  E+I
Sbjct: 3   IWHNLDMKMNWYDLVKSRMKEIGITQDVLAERMNMAQPTIARYLN-----KKREPDLETI 57

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNT 117
             I+   + +   L      +   +  +   +         +                 +
Sbjct: 58  ASIMKHVDLSHMVLTSDGLVEYPDSAIENTRVVERNMSYQRAFPVISYVQAGAWAEAIES 117

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLL- 172
           V        +        +    +    SM       + +G ++++++      G  ++ 
Sbjct: 118 VPALASDEWYETTERTGEKCFWLRVSGDSMTATSGISFPEGTLILIDTERDHQSGSFVVA 177

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K L+   G+   L  LN  YP   +  +  + I  ++
Sbjct: 178 KLTDVNEATFKKLVMDAGQKF-LKPLNNAYPTLPINGN-CKIIGVVV 222


>gi|153954204|ref|YP_001394969.1| LexA repressor [Clostridium kluyveri DSM 555]
 gi|219854812|ref|YP_002471934.1| hypothetical protein CKR_1469 [Clostridium kluyveri NBRC 12016]
 gi|189046534|sp|A5N8J0|LEXA_CLOK5 RecName: Full=LexA repressor
 gi|254809093|sp|B9E1Z5|LEXA_CLOK1 RecName: Full=LexA repressor
 gi|146347085|gb|EDK33621.1| LexA [Clostridium kluyveri DSM 555]
 gi|219568536|dbj|BAH06520.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 202

 Score = 91.4 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 40/227 (17%)

Query: 1   MTSFSHK---KIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWP 53
           MT  S+    +I+  I    ++    PS   +    GL  TS   +  ++    G  +  
Sbjct: 1   MTERSNNRQSQIYNFIKSQIKQKGYPPSVREICTAVGLKSTSTVHSYLEKLERRGFIKRD 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +T+S                            ++ +   +   P          +    N
Sbjct: 61  ATKS----------------------RTIEVIEKSQKKEMIEVPIIGTITAGMPIIAVEN 98

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +   +P     +        +    + +  SM+      GD+ ++        GD ++
Sbjct: 99  IEDYFPLPMDYIKNKR------EIFMLRVKGESMVDAGILDGDLSLIEKVHSAENGDIVV 152

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         I L   N   P   V   D + I R++
Sbjct: 153 ALI-ENEATLKRFFKEEN-HIRLQPENKNMPPIIV--DDCKIIGRLI 195


>gi|163798137|ref|ZP_02192073.1| hypothetical protein BAL199_00805 [alpha proteobacterium BAL199]
 gi|159176580|gb|EDP61158.1| hypothetical protein BAL199_00805 [alpha proteobacterium BAL199]
          Length = 205

 Score = 91.4 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 17/208 (8%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ------LLDL 75
           +    +A  A ++ +      R    GR+  P+ E + KI A               +  
Sbjct: 1   MNAREVAEDARVNRSFVYDIMR----GRSEHPNLEKLDKIAATLKVDRNWLLHGKGEIQG 56

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
                     +   IP +    S  GG   +     G  +           H  + A   
Sbjct: 57  DEPLTHQEPDEFISIPSVEVTASMGGGTIVANEVAIGEPY---HFKSSWIAHR-LRANPA 112

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR---S 192
                  +  SM+P  + GD+++++    +     + +      +VAK L          
Sbjct: 113 NLRIMHVEGDSMMPTLQDGDVVLVDLGRALPTPPGIFVLFDGMGLVAKRLEYIPNSDPPC 172

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILW 220
           + ++S N  Y        +I+ I RI W
Sbjct: 173 VRIISDNPFYTPYDRTADEIKIIGRIRW 200


>gi|254244958|ref|ZP_04938280.1| hypothetical protein PA2G_05837 [Pseudomonas aeruginosa 2192]
 gi|126198336|gb|EAZ62399.1| hypothetical protein PA2G_05837 [Pseudomonas aeruginosa 2192]
          Length = 221

 Score = 91.4 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 69/214 (32%), Gaps = 14/214 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK-RFGIEGRNRWPSTESIFKILAATNET 68
              + R+     L  + LA   G      +    +   +G     + E    +       
Sbjct: 14  LTNLRRIMAERKLRSTDLADLLGKSQAQVSSFAGKNPSKGIGNQIAREIELALSLPKGML 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                     +        +++P++    +G          P G+    +  P    P  
Sbjct: 74  DLSFGPGEQGNAVVLSSTGRKLPVIGSVAAGKWCEAVDTFLP-GDAEEWIEAPGPVGP-- 130

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLIS 187
                       K +  SMLP +  G+ ++++ +++   G  ++ K     ++  K L  
Sbjct: 131 -------NAFILKIEGLSMLPKFSDGEKVVIDPSLEALPGHYVVAKKTKSQEVTFKQL-R 182

Query: 188 RRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220
           R G    L +LN  +P   +++  + +   R  W
Sbjct: 183 REGTEYFLYALNPDWPDRIIKLTEEWQICGRARW 216


>gi|291457550|ref|ZP_06596940.1| repressor LexA [Bifidobacterium breve DSM 20213]
 gi|291380603|gb|EFE88121.1| repressor LexA [Bifidobacterium breve DSM 20213]
          Length = 237

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 58/223 (26%), Gaps = 11/223 (4%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           ++ + ++  + +AI    +     PS   +   AGL   S  K +   +E +       +
Sbjct: 15  STLTERQRKVLDAIRLHIDEQGFAPSFREIGEAAGLKSPSSVKHQLQVLEDK--GFIRMN 72

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K  A              +     E             + S      G    G     
Sbjct: 73  ANKGRAIEVVAPPPENTAAVTANTVEEHTAGIYAFPSESIAESQDVPLVGRIAAGVPITA 132

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176
               +                  +    SM+      GD +++        GD +     
Sbjct: 133 EQHVDDVMRLPERLTGSGNLFMLEVHGDSMVDAAICDGDFVVVREQNSAVNGDIVAALLD 192

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K    +    I LM  N  Y     + +    + +++
Sbjct: 193 -DEATVKTF-RKENGHIWLMPHNPAYSPI--DGTYATIMGKVV 231


>gi|323466320|gb|ADX70007.1| LexA repressor [Lactobacillus helveticus H10]
          Length = 208

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 29/221 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           +     +I   I    +     P+   +     L  TS        +E +       +  
Sbjct: 6   SDTKQLEILRYIYDTVDHRGFPPTVREICAAVKLSSTSTVHGHLARLERKGLLIKDATKP 65

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + L  T+E   +L             K K IP++    +G             +      
Sbjct: 66  RALEITDEGKKELGI-----------KPKRIPVVGVVAAGQPI------LAVQDIDEYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P              +    K    SM+      GD +I+      N G+ ++      
Sbjct: 109 LPPDLENDA------GELFMLKIHGESMINAGILNGDNVIVKKQNTANNGEIVVAMTDEN 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K     +     L   N       +   ++  + +++
Sbjct: 163 EATVKRFYKEK-GHYRLQPENDTMAPIILP--EVTILGKVV 200


>gi|315604442|ref|ZP_07879508.1| LexA repressor [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314148|gb|EFU62199.1| LexA repressor [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 226

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 59/217 (27%), Gaps = 9/217 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           H+ I   I+     +   PS   +A   GL   S  K     +E          + + L 
Sbjct: 10  HRAILRVINEKLSSNGFPPSVREIASAVGLASPSTVKHHLDALEAEGYLVREPGLPRALD 69

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            T     +L     +    +    +    +             G    G         E 
Sbjct: 70  LTQRAREELGITGSA--PVSSGVVRIEVPISHVEEEGTPIPLVGRIAAGAPITAEQHVED 127

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                            +    SM+      GD +++ S  +   G+ +      G+   
Sbjct: 128 VFRLPTSMTGHGDLFMLEVSGDSMVDAGIFDGDYVVIRSQNEARNGEYVAAMID-GEATV 186

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L S  G  + L+  N  Y        +   + +++
Sbjct: 187 KEL-SVTGGHVWLLPHNRDYSPI--PGDEATILGKVV 220


>gi|289423803|ref|ZP_06425598.1| repressor LexA [Peptostreptococcus anaerobius 653-L]
 gi|289155842|gb|EFD04512.1| repressor LexA [Peptostreptococcus anaerobius 653-L]
          Length = 211

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 60/224 (26%), Gaps = 33/224 (14%)

Query: 4   FSHKKI--WEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNR-WPSTE 56
              K I     +   + R+   PS   + +K  +  TS  F   KR       R  P+  
Sbjct: 5   LKQKDIDVLAYLKDHSSRYGYPPSVREICKKLDIKSTSTVFAIIKRLETHNYIRKDPTKP 64

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +IL                   T          +   P        S +    N   
Sbjct: 65  RAIEILDR----------------DTESSSLNYNDEVLRLPLVGQIAAGSPILAEENIEE 108

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ-VNCGDRLLIK 174
            + +P         Y         K +  SML      GD +I++ + +  + G  +   
Sbjct: 109 YIALPSS-------YVKNGSSFMLKVKGDSMLNAGILDGDYIIIDPSNKNPSNGKMVAAL 161

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                   K L       I L   N  Y     + S +  +  +
Sbjct: 162 IDGDTSTVKTLERI-DNKIVLKPENPDYQPMIFDTSQVSILGLV 204


>gi|315611994|ref|ZP_07886912.1| phage transcriptional repressor [Streptococcus sanguinis ATCC
           49296]
 gi|315315983|gb|EFU64017.1| phage transcriptional repressor [Streptococcus sanguinis ATCC
           49296]
          Length = 251

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 32/247 (12%)

Query: 1   MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M++   K+I+ A ++ +     +  + L    GL  T+     +       R    E + 
Sbjct: 1   MSNNKSKEIFSANLENLMSSRGIDRNKLCSDLGLKYTTVRDWLKGIT--YPRIGKIELLA 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKK--------------EKEIPLLYFPPSGSGGFFD 105
                    + +       + +                    ++  +L +         +
Sbjct: 59  DYFGVNKSDLIEDKAQEVKELKIPTSPLVHKITEKVVKLSTPRKQKVLNYANEQLKEQNN 118

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRK 153
             +      +      ++ + +   Y                 D        SM P ++ 
Sbjct: 119 KVITIEEKLFEYRVFEKLAAGNGYSYFNDGNYDTVFYNKDLDHDFASWVFGDSMEPKFQN 178

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDI 212
           G+++++        G  +      G    K +       + L+SLN  Y         D 
Sbjct: 179 GEVVLIKETGFDYDG-AVYAVDWDGQTYIKKVYREPDG-LRLVSLNPKYKDKFAPFEEDP 236

Query: 213 EWIARIL 219
             I +I+
Sbjct: 237 RIIGKIV 243


>gi|163797189|ref|ZP_02191143.1| hypothetical protein BAL199_09590 [alpha proteobacterium BAL199]
 gi|159177484|gb|EDP62038.1| hypothetical protein BAL199_09590 [alpha proteobacterium BAL199]
          Length = 205

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 9/204 (4%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           +    +A  A ++ +      R    GR+  P+ E + KI A        LL        
Sbjct: 1   MNAREVAEDARVNRSFVYDIMR----GRSEHPNLEKLDKIAATLKVDRNWLLHGKGEIQG 56

Query: 82  TTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH-NGIYAIQTQDTR 139
                 +E    +  P          G        +        S   + + A       
Sbjct: 57  DEPLIHQEPDEFISIPSVEVTASMGGGTIVANEVESGEPYHFKSSWIAHRLRANPANLRI 116

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR---SIDLM 196
              +  SM+P  + GD+++++    +     + +      +VAK L          + ++
Sbjct: 117 MHVEGDSMMPTLQDGDVVLVDLGRALPTPPGIFVLFDGMGLVAKRLEYIPNSDPPCVRII 176

Query: 197 SLNCCYPVDTVEMSDIEWIARILW 220
           S N  Y        +I+ I RI W
Sbjct: 177 SDNPFYTPYDRTADEIKIIGRIRW 200


>gi|147677688|ref|YP_001211903.1| SOS-response transcriptional repressors [Pelotomaculum
           thermopropionicum SI]
 gi|189046542|sp|A5D2J8|LEXA_PELTS RecName: Full=LexA repressor
 gi|146273785|dbj|BAF59534.1| SOS-response transcriptional repressors [Pelotomaculum
           thermopropionicum SI]
          Length = 203

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 65/227 (28%), Gaps = 39/227 (17%)

Query: 1   MTS-FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWP 53
           MT   + K+  + E I +   +    PS   + ++ GL  +S      K+   +G  R  
Sbjct: 1   MTEELTPKQAAVLEFIKKSIRQRGYPPSVREIGQEVGLSSSSTVHGYLKKLEEKGYLRRD 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +T+                           +    E       P          +    N
Sbjct: 61  ATKPRA--------------------IEVLDNPAGEKVEFINVPVLGRVAAGVPLLAVEN 100

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
           + +   +P         +    +      +  SM       GD++++        GD ++
Sbjct: 101 REDIFPLPVH-------FTGSGEFFMLTVRGDSMIEAGILNGDMVVVRRQQDAGNGDIVV 153

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K L       I L   N          ++++ + +++
Sbjct: 154 AL-LEEEATVKRLFK-ENGRIRLQPENRLMEPIY--AAEVQILGKVI 196


>gi|296450694|ref|ZP_06892447.1| repressor lexA [Clostridium difficile NAP08]
 gi|296260538|gb|EFH07380.1| repressor lexA [Clostridium difficile NAP08]
          Length = 226

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 26/221 (11%)

Query: 3   SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             + K+  I E I          P+   +    GL  TS   S                +
Sbjct: 19  DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 66

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K+     +             +  +       ++  P           +    N    +
Sbjct: 67  EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 125

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P             + +   K +  SM+       D ++++          ++     
Sbjct: 126 PFPASLVKG-------SNNFVLKVKGESMINAGILDEDYVVVDKKNTAFNSQIVVALING 178

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                K      G  I L   N       +  S++E +  +
Sbjct: 179 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 218


>gi|225868534|ref|YP_002744482.1| phage repressor-like protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701810|emb|CAW99238.1| putative phage repressor-like protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 232

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 21/232 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  FS  +    +       +++   L    G++  + +  ++     +      E + K
Sbjct: 1   MLMFSGIQ----LKTARLSRHISQEQLGELLGVNKMTISNWEKEKN--KPNQKHFEELIK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I     E   Q   L     + +   ++++               +        +     
Sbjct: 55  IFQLPAEYFYQENRLLLPYSQLSAFNKEKVISYSESLLEQQEKMIALPAKQKTLYPYRVY 114

Query: 121 PEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
             + +     Y                 D        SM P Y  G+++++        G
Sbjct: 115 ERLSAGTGYSYFGDGNFDVVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG 174

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G    K +       + L+SLN  YP       D    I +I+
Sbjct: 175 -AIYAVEWEGQTYIKKVYREENG-LRLVSLNKKYPDKFAAFDDNPRIIGKII 224


>gi|95930066|ref|ZP_01312805.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684]
 gi|95133760|gb|EAT15420.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684]
          Length = 230

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 68/219 (31%), Gaps = 18/219 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I E +  +  +  L     A++ G+  ++  + ++         P    +  I    +
Sbjct: 22  KTIGERLRFLRGKQKLP--DFAQRFGVSKSTLGRYEKGIS-----LPDAGFLAAICQQLH 74

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                LL       +   K           P      + +   F T   +    V +   
Sbjct: 75  VCPQWLLMGGEKPCQPFVKDCPSGACDDSGPSCIVRDYANLSSFKTFMDFFQNWVVDQGF 134

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
             + + +        +    SM P +  G +++++        D +    +   ++ + L
Sbjct: 135 EVDKLLS-------VRVTGDSMAPTFAAGSLVLVDMNQPDLSADAIFALRQDEKVIVRRL 187

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
                  + + + N  Y    V       ++ + R++WA
Sbjct: 188 QKMVNGDVHVKTDNPRYEDQIVRSESLPILDIVGRVVWA 226


>gi|329737802|gb|EGG74038.1| peptidase S24-like protein [Staphylococcus epidermidis VCU028]
          Length = 203

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 77/215 (35%), Gaps = 25/215 (11%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           + R+ E  + +    +++ GL  T+  +  +R     +      E++ KI    N    +
Sbjct: 7   LKRLMELKSGSIKAFSKEIGLAYTTVRSILERGVFNAK-----VENVIKICKGLNIKPEE 61

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           ++D+           + E   +   P  S       ++   N  + +             
Sbjct: 62  IMDIEQ--------PQLETLPVKKIPVVSKISAGLPIYSEENLVDYIYF------ATKNL 107

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
               ++   +    SM  ++++ D++++     V  G   ++     +   K +   + +
Sbjct: 108 NSDKEEFGLRVSGDSMDKIFQENDVVVVEKDSIVENGQLGVVMVNGYNATVKRVRYNKNQ 167

Query: 192 SIDLMSL--NCCYPVDTV-EMSDIEWIARILWASQ 223
            I L+    N  +      E  +++ I R++ ASQ
Sbjct: 168 -IILIPESNNPEHLPQVYGEDDEVKIIGRVV-ASQ 200


>gi|300922482|ref|ZP_07138595.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
 gi|133874004|gb|ABO40696.1| prophage repressor [Enterobacteria phage CL707]
 gi|300421169|gb|EFK04480.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
          Length = 237

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
             + KIL  + E     +     +       +  +   Y  P  S         P    +
Sbjct: 66  --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAG-MFSPELRTF 122

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGD 169
             V      S               + +  SM       P +  G +++++    V  GD
Sbjct: 123 TKVDAERWVSTTKKA---SDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGD 179

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 180 FCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|148548606|ref|YP_001268708.1| putative phage repressor [Pseudomonas putida F1]
 gi|148512664|gb|ABQ79524.1| putative phage repressor [Pseudomonas putida F1]
          Length = 280

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 67/275 (24%), Gaps = 57/275 (20%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR----------- 51
             +  ++  AID       ++   LA    + P S     + G   +++           
Sbjct: 1   MLTGPELGAAIDAARIAKGVSKKQLADDFQVKPPSVQGWVKNGRIDKSKLMDVIAYFSDV 60

Query: 52  ----------------------WPSTES------------IFKILAATNETICQLLDLPF 77
                                  P TE+            + K     +++    L    
Sbjct: 61  VGPEHWGLRPGFSYESIQEVTSEPVTETAPTSAADMVRAMLAKQGKNLSDSARAQLIAAA 120

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-------SPHNGI 130
                      +                      G        PE+        S    I
Sbjct: 121 EATDEGNVITVDFTRPGLVGDEVRIAHYDIRAAMGGGQLPHDYPEMLKDIRVSPSHLREI 180

Query: 131 YAIQTQDTRHKTQ---DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                +    K       SM P  +  D LI+N  ++   GD + +      +  K L  
Sbjct: 181 GVEFEEHYHLKVVTGWGQSMEPTIKHRDPLIVNINVRDFVGDGVYLFVWDDLLYIKRLQV 240

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220
                 +++S N  +    +        AR+  +W
Sbjct: 241 ADEEHYEMISDNPRHKDRLIRRDMTYIQARVLLVW 275


>gi|229592828|ref|YP_002874947.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229364694|emb|CAY52645.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 258

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 63/233 (27%), Gaps = 28/233 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRNRWPSTESIFKILAATNET 68
            + +  +    +L+ S  A+  G+ P   N   KR    GR        + +I      +
Sbjct: 5   GDRLKALLREVHLSASDFAKNRGVTPQHVNNWFKRGVPMGR--------LNEIAELLCIS 56

Query: 69  ICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              L                  +    L                 P          P   
Sbjct: 57  SRWLRTGEGPKHPPANFLLEGPDTRKGLPTTREGSGKYLTGPACLPEKIDVEIDLHPSFT 116

Query: 125 SPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           S      ++           +       D SM+ + ++G  L ++          +    
Sbjct: 117 STERIRVSLHTLQTLTVNPDRALGAYMVDNSMIDIIQQGATLAIDRGRTQIIDGEIYAVE 176

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD-----IEWIARILWAS 222
             G +  K L +R G  + + S N   +P + +         +E +  + W S
Sbjct: 177 HDGMLRIKYLYNRPGGGLRMRSHNAGEHPDEYLTHEQRFEQNVEILGWVFWWS 229


>gi|271968374|ref|YP_003342570.1| Repressor lexA [Streptosporangium roseum DSM 43021]
 gi|270511549|gb|ACZ89827.1| Repressor lexA [Streptosporangium roseum DSM 43021]
          Length = 236

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 23/220 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGR-NRWPSTESIFK 60
            +KI E I    ++    PS   +     L  TS   ++      +G   R P      +
Sbjct: 28  QRKILEVIRDSVQQRGYPPSMREIGEAVQLTSTSSVSHQLTALQRKGYLRRDPHRPRALE 87

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +       +    +    +   +      +PL+    +G             +  +   +
Sbjct: 88  VRLPGEPALWVDPESRDDETPISRPTAAYVPLVGRIAAGGPI------LAEESIEDVFAL 141

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+           +      +    SM       GD +++      + GD ++     G+
Sbjct: 142 PKQLVG-------EGTLFLLQVTGDSMIEAAIANGDWVVVRQQPVADNGD-VVAAMIDGE 193

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +    + L+  N  Y        +   + +++
Sbjct: 194 ATVKTFKRK-DGHVWLVPHNPNYDPI--PGDEATVLGKVV 230


>gi|317483057|ref|ZP_07942058.1| LexA repressor [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915463|gb|EFV36884.1| LexA repressor [Bifidobacterium sp. 12_1_47BFAA]
          Length = 241

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 63/219 (28%), Gaps = 9/219 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            +K+ +AI    +     PS   +   AGL  P+S  ++ +    +G  R  + +     
Sbjct: 21  QRKVLDAIRTHIDEQGFAPSFREIGNTAGLKSPSSVKHQLQVLEDKGFIRMNANKGRAIE 80

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           + A +    +       +  +T    +         + S      G    G         
Sbjct: 81  VVAGSAPNAEKPSQASEEATSTSNVAEIYQFPAEAIAESHDVPLVGRIAAGVPITAEQHV 140

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +                  +    SM+      GD +++        GD +       + 
Sbjct: 141 DDVMRLPERLTGSGTLFMLEVHGDSMVDAAICDGDYVVVREQNSAVNGDIVAALLD-DEA 199

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K    +    + LM  N  Y     + +    + +++
Sbjct: 200 TVKTF-RKENGHVWLMPHNPAYSPI--DGTHATIMGKVV 235


>gi|306814000|ref|ZP_07448173.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           NC101]
 gi|305852637|gb|EFM53085.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           NC101]
          Length = 212

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 23/211 (10%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           ++   LA+ +G+   +  +       G  +      I +I  A       L         
Sbjct: 1   MSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIANALGVRTEWLSSGIGPMRN 54

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--- 138
             ++  K                       G         E+       +          
Sbjct: 55  DGQQSGKPAV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGR 111

Query: 139 ------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                     +  SM      GD+L ++  ++   GD +           K L   +   
Sbjct: 112 KAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-K 170

Query: 193 IDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
           + ++S N  Y     +E  +   +    +++
Sbjct: 171 LLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 201


>gi|89101001|ref|ZP_01173845.1| LexA repressor [Bacillus sp. NRRL B-14911]
 gi|89084297|gb|EAR63454.1| LexA repressor [Bacillus sp. NRRL B-14911]
          Length = 207

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 60/227 (26%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           M   S   + I E I    +     PS   +    GL   ++ +    R   +G   R P
Sbjct: 1   MAKISKRQQDILEFIKEEVKAKGYPPSVREIGEAVGLASSSTVHGHLARLESKGMIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL     +                        +   P          +    N
Sbjct: 61  TKPRAIEILELDETSHI------------------PRNNVVNVPILGKVTAGQPITAIEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +PE  +P         Q    +    SM       GD +I+      N GD ++
Sbjct: 103 VEEFFPLPESMAP------AAEQVFMLEIMGESMIEAGILDGDYVIVRQQQSANNGDIVV 156

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     R   I L   N       +    +  + +++
Sbjct: 157 AMTDEDEATVKRFFKERD-YIRLQPENSTMEPIILRN--VSILGKVI 200


>gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2]
 gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans
           PW2]
          Length = 211

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 68/215 (31%), Gaps = 21/215 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I  + +   LT + LA + G+  T+  + +          P  ++I ++       + 
Sbjct: 5   ENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSN-----PPIKTIQRLAQTLGVPVT 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            ++    ++       +   P          G  +            + +P   +     
Sbjct: 60  IVVGDNDANDLKRALDKIRAPCARLRRRIHPGIANKPDM----LDECIELPSEVA----- 110

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                     + +   M  +Y +G +++++   +   G   ++     + + + L  +  
Sbjct: 111 -LAHPNAYFLEVKGDCMNRVYPEGCLILIDPESEPRSGSIAVVSIDGSECLVRRLY-QTA 168

Query: 191 RSIDLMSL--NCCYPVDTVEMSD---IEWIARILW 220
            ++ L     N  +    +E  D   +     ++W
Sbjct: 169 HTLVLSPESWNSEHCDVIIERGDSRNVSIHGIVVW 203


>gi|240171202|ref|ZP_04749861.1| LexA repressor [Mycobacterium kansasii ATCC 12478]
          Length = 226

 Score = 91.4 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 27/226 (11%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPS 54
           ++ + ++  I   I          PS   +    GL  TS   ++ +    +G   R P+
Sbjct: 14  STLTERQRTILNVIRTSVTNRGYPPSIREIGDAVGLTSTSSVAHQLRVLERKGYLRRDPN 73

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                 +          + D+      T       +P   F P          +      
Sbjct: 74  RPRAVDV--------RGVEDVVTPAAVTEVAGSDALPEPTFVPVLGRIAAGGPILAEEAV 125

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P            +      K    SM       GD +++      + GD +  
Sbjct: 126 EDVFPLPRELVG-------EGTLFLLKVVGDSMVEAAICDGDWVVVRQQNVADNGDIVAA 178

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G+   K      G  + LM  N  +       +D   + +++
Sbjct: 179 MID-GEATVKTFKR-AGGQVWLMPHNPSFDPI--PGNDATVLGKVV 220


>gi|320192275|gb|EFW66920.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           O157:H7 str. EC1212]
 gi|330910960|gb|EGH39470.1| putative transcriptional regulator [Escherichia coli AA86]
          Length = 212

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 23/211 (10%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           ++   LA+ +G+   +  +       G  +      I +I  A       L         
Sbjct: 1   MSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIANALGVRTEWLSSGIGPMRN 54

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--- 138
             ++  K                       G         E+       +          
Sbjct: 55  DGQQSGKPAVN---HSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGR 111

Query: 139 ------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                     +  SM      GD+L ++  ++   GD +           K L   +   
Sbjct: 112 KAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-K 170

Query: 193 IDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
           + ++S N  Y     +E  +   +    +++
Sbjct: 171 LLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 201


>gi|322392726|ref|ZP_08066186.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC
           700780]
 gi|321144718|gb|EFX40119.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC
           700780]
          Length = 228

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 56/218 (25%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETI 69
           E +    +   LT   +A + G+   +++  +R   E         E I K+       I
Sbjct: 5   EKLKARRKELKLTQKEIADQLGISFQAYSAWERGVKEPSEEKVKQLEKILKVPKGYFTQI 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122
             +        +  EK       L                   + +  +          +
Sbjct: 65  EIVCLYNSLSNQGKEKVVVYARNLAQEEQAKKVTTMPEKLFEYHVYERMSAGIGASVYDD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 RNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           K +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIHISYEEDPRIVGIIV 220


>gi|330445051|ref|ZP_08308704.1| peptidase S24-like family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489242|dbj|GAA03201.1| peptidase S24-like family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 169

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
             +   ++    N ++ + L     +          IP++    +G    +    +P G 
Sbjct: 4   GFDYAARVAEKLNVSL-EWLYYGGEEIGLACSPSAHIPIVGNTQAGPDRAWLDLGYPAGY 62

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
               V  P                   K    SM P   +G+ ++++   +   G+ +++
Sbjct: 63  SDEYVDFPTKA----------RNVYALKVVGNSMSPRILEGEAVLVDPESEPATGEEVVV 112

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +  TG ++ K L + R   I L S N  Y      + ++E++  ++
Sbjct: 113 RLTTGAVMVKTLAAIRDEKIFLDSYNHGYERMVFPLDEVEFMHPVI 158


>gi|229844288|ref|ZP_04464428.1| putative phage repressor [Haemophilus influenzae 6P18H1]
 gi|229812537|gb|EEP48226.1| putative phage repressor [Haemophilus influenzae 6P18H1]
          Length = 234

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 20/219 (9%)

Query: 15  RMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++    +     S  AR  G+   S  +  +   +     PS  ++ KI  A   ++  L
Sbjct: 16  KLIAEKSFKNNYSEFARAVGVAQASLARWVKGEAD-----PSRTNLIKITEAGGVSLDWL 70

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----PTGNKWNTVGVPEIRSPHN 128
                +      + +K    L      +    +          G  +N    P   +   
Sbjct: 71  ALGVGNMDGVEPQAKKSEVNLIASNDETFSVIEDCREVRISAGGGGFNDEYKPYQTTKVE 130

Query: 129 GIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
             +                   SM P  + G+ +I++ + +     ++ +    G ++ K
Sbjct: 131 KAWLDSRRLKAEDCAMFLVSGDSMYPTLKDGEEIIVDRSKKELKDGKIFVLNNEGAMLVK 190

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            +       I L+S N  Y    ++      +  I +++
Sbjct: 191 KVQ-ITYNGITLISQNTEYTPIELDAEQANSLIVIGQVV 228


>gi|210633086|ref|ZP_03297653.1| hypothetical protein COLSTE_01561 [Collinsella stercoris DSM 13279]
 gi|210159240|gb|EEA90211.1| hypothetical protein COLSTE_01561 [Collinsella stercoris DSM 13279]
          Length = 212

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 24/218 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++I++ I    +     PS   +A   GL  P++ +       +          + K  
Sbjct: 9   QQQIYDFIRSYQKEKGYPPSVREMAAAVGLSSPSTVHAHLSALEDLG--------LIK-R 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            AT     ++ +   S    TE +          P          +    N  +T  +P 
Sbjct: 60  DATKPRALEVFNSDGSSCAVTETERPASRGTVSLPLVGRVAAGLPILAEQNIEDTFTLPT 119

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                    A  +     +    SM+      GD +++        G+ ++     G+  
Sbjct: 120 EI-------ATDSSSFMLEVHGESMINAGIYNGDYIVVREQKSAMNGEIVVALID-GEAT 171

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K         + L   N           +   + +++
Sbjct: 172 VKTFYK-EQGRVRLQPENDAMEPIY--AENPTILGKVV 206


>gi|323126871|gb|ADX24168.1| putative transcriptional regulator [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 227

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 61/222 (27%), Gaps = 20/222 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +      H  +   +A + G+   +++K ++   +     P+ E++ K+         
Sbjct: 5   EKLKLKRTEHGFSQLSIAERIGVSKQAYSKWEKGISQ-----PTNENLIKLENLFKVPAG 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
              +    +         +   + +  S                +      ++ +     
Sbjct: 60  YFNEEEILNLYHQLNSPNQSKAITYVRSLVSSQNKVSHLIQETLYEYKVFEKMSAGIGSS 119

Query: 131 YAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                +            D        SM P Y   D+ ++  +     G  +      G
Sbjct: 120 IYDDGEYDTVYFNEELAHDFASWIDGDSMEPTYHNHDVALIRESGFDYDG-AIYAVVWNG 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +       + L+S+N  Y        +    + +I+
Sbjct: 179 QTYIKKVYRDEDG-LRLVSINKDYADKFAPYDENPRIVGKIV 219


>gi|269202476|ref|YP_003281745.1| putative phage repressor [Staphylococcus aureus subsp. aureus ED98]
 gi|262074766|gb|ACY10739.1| putative phage repressor [Staphylococcus aureus subsp. aureus ED98]
          Length = 238

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 37/239 (15%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++     ++ S L+R+ G+   S +       E +        + K L      + 
Sbjct: 6   DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63

Query: 71  QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGGFF------------------ 104
                        +           ++  +L +  S                        
Sbjct: 64  GFDISKNRKIENNDITTVYNQLTPPRQNNVLKYANSQLDEQNSKGDNVVDINSYKQDKVE 123

Query: 105 --DSGVFPTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNS 161
              +G    G       + E       + A +   D   K    SM P+++ G+I+ +  
Sbjct: 124 VDVNGCVSAGVGE---SLHEEAIFKTYVKAPVPPHDLALKVNGNSMEPMFKDGEIIFVEK 180

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              +  G   +     G+   K +       + L+SLN  Y          +  + +++
Sbjct: 181 THNIKNGQIGIFII-EGEAYLKKVF-VEDNRLTLVSLNKKYRDLHFYRNESVRLVGKVI 237


>gi|133873970|gb|ABO40666.1| prophage repressor [Enterobacteria phage HK544]
          Length = 237

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 19/231 (8%)

Query: 4   FSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
            + +++     +  + E       L+   +A K G+  +                 +   
Sbjct: 8   LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL-- 65

Query: 58  IFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           + KIL       +     ++ ++  +       + +    ++          +   F  G
Sbjct: 66  LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFTKG 125

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +    V   +  S       ++       T      P +  G +++++    V  GD  +
Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|315122221|ref|YP_004062710.1| LexA repressor [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495623|gb|ADR52222.1| LexA repressor [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 223

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 6/220 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   K++ + I    E   L+PS    K  L   S +   R  +   +R      I +
Sbjct: 1   MLTLKQKELLDFIQEYFEATGLSPSFDEMKKALSIASKSGIYRLVLSLEDRGF----IRR 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I           +         + +                     G        ++V  
Sbjct: 57  IPKRARALKIVKIPENLKLSERSTQDSGVGGERGKEKFCYSPVPFMGCIAAEVSISSVQK 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                        + +    + +D SM+ +   + DI+++ S+   + GD +L      +
Sbjct: 117 RMRDILVPSTMLREGKHYAFEMEDDSMIGVGILQRDIVVMCSSKSADPGDIVLAFLDDKN 176

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    ++G SI L S +  Y      ++ ++   +++
Sbjct: 177 ATLKRF-RQKGDSIALESAHPAYKTRIFPLNSVKIQGKLV 215


>gi|148556119|ref|YP_001263701.1| LexA repressor [Sphingomonas wittichii RW1]
 gi|166224652|sp|A5VB97|LEXA_SPHWW RecName: Full=LexA repressor
 gi|148501309|gb|ABQ69563.1| SOS-response transcriptional repressor, LexA [Sphingomonas
           wittichii RW1]
          Length = 224

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 51/220 (23%), Gaps = 7/220 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP--STESI 58
           M +    ++   I+    +  ++PS    K  LD  S +   R       R       + 
Sbjct: 1   MLTRKQHELLCFINDRLLQTGVSPSFEEMKEALDLKSKSGVHRLISALEERNFIRRLPNR 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L               +     +     +P               G    G     +
Sbjct: 61  ARALEVLRMPETATAKPTAAASGKAKAAAPAVPQAANENVLEIPLH--GRIAAGLPIEAL 118

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                 S          +    +    SM       GD  ++  A     G+ ++     
Sbjct: 119 EGQSSLS-VPAALLGPGEHYALEVAGDSMVEAGILDGDYALIRRAETARDGEIVVALIAD 177

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            +   K         I L   N  Y     +   +    +
Sbjct: 178 AEATLKYFRREGA-MIRLDPANRAYDPQRYKPDQVRIQGK 216


>gi|307544695|ref|YP_003897174.1| phage repressor [Halomonas elongata DSM 2581]
 gi|307216719|emb|CBV41989.1| putative phage repressor [Halomonas elongata DSM 2581]
          Length = 251

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 69/233 (29%), Gaps = 30/233 (12%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              +K  + I R+          +AR+AG+  ++ ++       G+   PS   + K+  
Sbjct: 22  MQKEKPRDVIRRLINESGKRAIDVAREAGVPQSTLSRIL----TGKIEEPSDRPVAKLAE 77

Query: 64  ATNETICQLL---------------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
               +  Q+                  P           K    +        G +    
Sbjct: 78  YFGVSGDQIRGREPIETEGSADKIAQHPALHESNVAPPPKLEGYVPVISWVQAGSWTEVC 137

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
                    V  P          A   +    + +  SM P Y    I+ ++  +    G
Sbjct: 138 NVDAVSEEMVPRPP---------ACSDRTFALRVKGQSMAPKYEPDLIIYVDPEVLPFDG 188

Query: 169 DRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           D ++     + +   K  +   G    L + N  +P   + ++ + E +  ++
Sbjct: 189 DDVVAVLTDSNEATFKQFVEEPGDDKMLKARNPSWPDPYIPINGNCEIVGVVI 241


>gi|183448279|pdb|3BDN|A Chain A, Crystal Structure Of The Lambda Repressor
 gi|183448280|pdb|3BDN|B Chain B, Crystal Structure Of The Lambda Repressor
          Length = 236

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 5   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 64

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 65  --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 122

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 123 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 179

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI      + L  LN  YP+          + +++ ASQ
Sbjct: 180 CIARLGGDEFTFKKLIR-GSGQVFLQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 229


>gi|73662727|ref|YP_301508.1| LexA repressor [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|123747862|sp|Q49XD4|LEXA_STAS1 RecName: Full=LexA repressor
 gi|72495242|dbj|BAE18563.1| SOS-response transcriptional repressor [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 207

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 63/226 (27%), Gaps = 32/226 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +    +I+E I +        PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MRELTKRQNEIFEYIKQTVHAKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E + + +++  +       K      +                   N 
Sbjct: 61  TK--PRAIEIVTEQLGEPINMEETIHVPVIGKVTAGIPIT---------------AVENV 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +PE  +  +      +          SM       GD +I+ S      GD ++ 
Sbjct: 104 EEYFPLPEHFTSTHN-----SDIFILNVVGNSMIEAGILDGDKVIVRSQTIAENGDIIVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       +    +  + +++
Sbjct: 159 MTEENEATVKRFFKEKA-HYRLQPENSSMDPIYL--DQVTVLGKVV 201


>gi|332850659|ref|ZP_08432906.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332867060|ref|ZP_08437357.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
 gi|332730496|gb|EGJ61812.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332734253|gb|EGJ65382.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
          Length = 243

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 14/216 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ER   T    A  AG    S    ++   +     P    +  I       
Sbjct: 31  IGARLKEERERLGYTQPVFAELAGTTKKSQIDYEKDLTQ-----PKAGYLAAIAEV-GAD 84

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  ++    S          E  L+            +         + +   +     +
Sbjct: 85  VGYIVTGNKSPQLQNSDFAYEFDLVNVYDVSVSAGDGAVCLGETEPTSRLAFRKDWLARH 144

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           G+YA          +  SM P     + L++N+  +      + +     +   K +  +
Sbjct: 145 GLYA--KDLVIVYAKGDSMEPTIHDKEPLLINTIDKELTDGFIYVVRNHENFWVKRVQRQ 202

Query: 189 RGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221
               + L+S N  Y    ++++   D+E I R  W 
Sbjct: 203 FNE-LLLLSDNEKYLPMKLDLNESTDVEIIGR--WI 235


>gi|153007564|ref|YP_001368779.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
 gi|151559452|gb|ABS12950.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
          Length = 235

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 42/241 (17%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + I R   +   T   LA   G+   S  + +    +     P ++ +  +     
Sbjct: 2   ETIGDRIRRARTQKGFTQQQLADHFGIARVSVTQWENNTTQ-----PGSDKLIGLTELLG 56

Query: 67  ETICQLLDLPFS------------------------DGRTTEKKEKEIPLLYFPPSGSGG 102
                 +                                T  +K     ++      + G
Sbjct: 57  GDAEWYITGHGMPPISDGVRIAVKQSGHPKREMTDAPNATIGEKVTGAGVMVPVYGQAVG 116

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
             D      G     V  P   +   G Y         +    SM P Y  G++  ++  
Sbjct: 117 GIDGQFLMNGTILYEVMAPPQIAEIAGAY-------GVQISGDSMFPRYEDGEVAFVDPR 169

Query: 163 IQVNCGDRLLIKPRTGD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            +V  GD ++ + +  +        K  +      + L   N      T +   +  +  
Sbjct: 170 RRVKKGDYVVAQIQFDEHEPPHAYVKRFVRHNAEELVLSQFNP-PKELTFDHDQVVSVHF 228

Query: 218 I 218
           I
Sbjct: 229 I 229


>gi|329122774|ref|ZP_08251346.1| transcriptional regulatory protein [Haemophilus aegyptius ATCC
           11116]
 gi|327472038|gb|EGF17476.1| transcriptional regulatory protein [Haemophilus aegyptius ATCC
           11116]
          Length = 234

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 67/219 (30%), Gaps = 20/219 (9%)

Query: 15  RMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++    +     S  AR  G+   S  +  +   +     PS  ++ KI  A   ++  L
Sbjct: 16  KLIAEKSFKNNYSEFARAVGVAQASLARWVKGEAD-----PSRTNLIKITEAGGVSLDWL 70

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----PTGNKWNTVGVPEIRSPHN 128
                +      + +K    L      +    +          G  +N    P   +   
Sbjct: 71  ALGVGNMDGVEPQAKKSEVNLIASNDETFSVIEDCREVRISAGGGGFNDEYKPYQTTKVE 130

Query: 129 GIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
             +                   SM P  + G+ +I++ + +     ++ +    G ++ K
Sbjct: 131 KAWLDSRRLKAEDCAMFLVSGDSMYPTLKDGEEIIVDRSKKELKDGKIFVLNNEGAMLVK 190

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            +       I L+S N  Y    +       +  I +++
Sbjct: 191 KVQ-ITYNGITLISQNTEYAPIELNAEQANNLIVIGQVV 228


>gi|315038593|ref|YP_004032161.1| LexA repressor [Lactobacillus amylovorus GRL 1112]
 gi|325957075|ref|YP_004292487.1| LexA repressor [Lactobacillus acidophilus 30SC]
 gi|312276726|gb|ADQ59366.1| LexA repressor [Lactobacillus amylovorus GRL 1112]
 gi|325333640|gb|ADZ07548.1| LexA repressor [Lactobacillus acidophilus 30SC]
 gi|327183798|gb|AEA32245.1| LexA repressor [Lactobacillus amylovorus GRL 1118]
          Length = 208

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 29/221 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           +     +I   I    E     P+   +     L  TS        +E +       +  
Sbjct: 6   SETKQLEILRYIYDTVEHRGFPPTVREICTAVNLSSTSTVHGHLARLERKGLLIKDATKP 65

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + L  T E    L             K KEIP++    +G             +      
Sbjct: 66  RALEITPEGKDALGI-----------KPKEIPVVGVVTAGQPI------LAVQDIDEYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P              +    K    SM+      GD +I+      N G+ ++      
Sbjct: 109 LPPDLENDA------GELFMLKVHGESMINAGILNGDSVIVRKQNSANNGEIVVAMTEEN 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K           L   N       +    +  + +++
Sbjct: 163 EATVKRFYK-ENGHYRLQPENDTMDPIILPK--VSILGKVV 200


>gi|225869607|ref|YP_002745554.1| phage repressor protein [Streptococcus equi subsp. equi 4047]
 gi|225699011|emb|CAW92101.1| phage repressor protein [Streptococcus equi subsp. equi 4047]
          Length = 248

 Score = 91.4 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 67/246 (27%), Gaps = 39/246 (15%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + +     N++   LA+K G+  T+  + ++  I        TE + KI    N 
Sbjct: 2   DIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVP----TEVLEKISKILNT 57

Query: 68  TICQLLDLPFSDGR------------------TTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                +    +                       ++K                       
Sbjct: 58  NPAYFMGWSDTPTPVQTQTLQEIIVTSKQLEQPRQEKVLSFANEQLEEQNKVVSIFDKKS 117

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH---------------KTQDTSMLPLYRKG 154
                + T  V  + +   G Y                        K    SM PL +  
Sbjct: 118 EETEDYITDYVEGLVAAGLGAYQEDNLHMEVKLRADDVPDEYDTIAKVAGDSMEPLIQDN 177

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IE 213
           D+L +  + QVN  D  +     G    K L      +  L SLN  Y    +   D I 
Sbjct: 178 DLLFIKVSSQVNMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNNSYEEIYLSEDDSIR 236

Query: 214 WIARIL 219
            I  ++
Sbjct: 237 TIGEVV 242


>gi|294787101|ref|ZP_06752355.1| repressor LexA [Parascardovia denticolens F0305]
 gi|294485934|gb|EFG33568.1| repressor LexA [Parascardovia denticolens F0305]
          Length = 276

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 66/249 (26%), Gaps = 47/249 (18%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNR------------ 51
           ++ EAI   +      PS   +A   GL  TS   ++      +G  R            
Sbjct: 32  QVLEAIRHYSTSQGYIPSFREIAALVGLKSTSSVKHQLDVLEKKGYIRMAANKGRAIELI 91

Query: 52  --------------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
                                P  E+  +  A    +              ++ + + I 
Sbjct: 92  TSEEPQSITEQEISDGESDLEPKDENQDRETAENEGSGRPTSARAEIYPFPSQSESESIA 151

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150
             +  P          +    +  + + +PE  +        +      +    SM+   
Sbjct: 152 QSHDVPLVGRIAAGVPITAEQHVDDVMRLPERLTG-------EGTLFMLEVHGDSMVDAA 204

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              GD +++        GD +       +   K     +   + LM  N  Y       +
Sbjct: 205 ICDGDFVVIREQKTAENGDIVAALLD-DEATVKTFRRDKSGHVWLMPHNPAYSPIDGTYA 263

Query: 211 DIEWIARIL 219
               + +++
Sbjct: 264 Q--IMGKVV 270


>gi|228998438|ref|ZP_04158029.1| LexA repressor [Bacillus mycoides Rock3-17]
 gi|228761359|gb|EEM10314.1| LexA repressor [Bacillus mycoides Rock3-17]
          Length = 224

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +   + I + I    +     PS   + +  GL   ++ +    R   +G  R   
Sbjct: 19  MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 78

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +    E   +             K    +P+                    + 
Sbjct: 79  TK--PRAIEILGEVRIETDTQSVVQVPIVGKVTAGLPI----------------TAVESV 120

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +P          A   Q    +    SM       GD++++        G+ ++ 
Sbjct: 121 EEHFPLPASVV------AGADQVFMLRISGDSMIEAGILDGDLVVVRQQHSAYNGEIVVA 174

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +     L   N       ++   +  I +++
Sbjct: 175 LTEDNEATVKRFYKEKD-HFRLQPENSSLEPIILDK--VSVIGKVI 217


>gi|283797994|ref|ZP_06347147.1| repressor LexA [Clostridium sp. M62/1]
 gi|291074295|gb|EFE11659.1| repressor LexA [Clostridium sp. M62/1]
          Length = 205

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 52/218 (23%), Gaps = 31/218 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I E I     +    P+   +     L  TS                S  S  + L
Sbjct: 9   KQQEILEYIKETILKKGYPPAVREICEAVKLKSTS----------------SVHSHLETL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P         + +    N      +P 
Sbjct: 53  EKNGYIRRDPTKPRTIEIIDDCFNLARREVVNVP-LIGTVAAGTPLLAQENIETYFPIPS 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P+        +    K +  SM       GD +++        G+ ++         
Sbjct: 112 ELLPN-------KEIFMLKVKGDSMIEAGIFNGDQILVEKTNTAENGEIVVALLD-DSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V   +++ + +++
Sbjct: 164 VKRFYR-EDGYYRLQPENASMEPIFV--DEVQILGKVI 198


>gi|311742754|ref|ZP_07716563.1| repressor LexA [Aeromicrobium marinum DSM 15272]
 gi|311314382|gb|EFQ84290.1| repressor LexA [Aeromicrobium marinum DSM 15272]
          Length = 247

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 60/219 (27%), Gaps = 17/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGR-NRWPSTESIFK 60
            +++ E +    E+    PS   + +  GL  TS   ++ K+    G   R P      +
Sbjct: 33  QRRVLEFLRDEVEKRGYPPSMREIGQAVGLVSTSSVSHQLKQLEKMGHIRRDPFRPRAME 92

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I           +    +        +   P   + P          +           +
Sbjct: 93  IFLPDGGAARHAVSSASASSYDETGIDDAHPEATYVPIVGRIAAGGPILAEERVEEIFPL 152

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+                  +    SM+      GD +++        G+ +      G+
Sbjct: 153 PKSLVG-------DGTLFLLEVSGDSMIDAAICSGDYVVIRQQPVAENGEIVAAMLD-GE 204

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K    +    + L+  N  Y     + +    + ++
Sbjct: 205 ATVKTFQRK-DGQVWLLPHNDDYSPI--DGTHATILGKV 240


>gi|301058409|ref|ZP_07199430.1| peptidase S24-like protein [delta proteobacterium NaphS2]
 gi|300447465|gb|EFK11209.1| peptidase S24-like protein [delta proteobacterium NaphS2]
          Length = 216

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 70/224 (31%), Gaps = 18/224 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             SH +     DR+    ++ + + LA   G++ ++  ++K+ G            I  +
Sbjct: 1   MTSH-RFGSFFDRVTAETDIRSQTELAAVLGINRSAITQAKKKGSIP------AGWILGL 53

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGV 120
                     L     S  + +  ++ E   +    +        G F  G+        
Sbjct: 54  SRKFGLNPDWLERGIGSPRKDSSCQDDEFAKIPKVNARLCA--GDGSFEVGSDIQGYYAF 111

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            +      G                SM P  + GD ++++ + +      L        +
Sbjct: 112 RKDWLNRKGS---ADAMVLMDIFGNSMAPELKDGDTVLVDESQKAIIAGALYAVGIEDTV 168

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWA 221
           + K +       + L S N  Y    +  S++     I +++W 
Sbjct: 169 MVKRVEKHPNN-LVLQSDNKDYAPIFLNESEMNMARIIGKVVWV 211


>gi|229817994|ref|ZP_04448276.1| hypothetical protein BIFANG_03281 [Bifidobacterium angulatum DSM
           20098]
 gi|229784598|gb|EEP20712.1| hypothetical protein BIFANG_03281 [Bifidobacterium angulatum DSM
           20098]
          Length = 245

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 65/227 (28%), Gaps = 25/227 (11%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNR-WPSTESIFKIL 62
           ++ +AI          PS   +   AGL  P+S  ++ +    +G  R   +     +IL
Sbjct: 23  QVLKAITTYQNERGFVPSFREIGAAAGLKSPSSVKHQLQTLEDKGYIRLNANKGRAVEIL 82

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG---------SGGFFDSGVFPTGN 113
                      +    D R         P      +                + +    +
Sbjct: 83  HDPFSEEPSGANRAEGDSRHDMATIIPFPSQNTSEAVLESRDIPLVGRIAAGTPITAEQH 142

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172
             + + +PE  +               +    SM+      GD +++        GD + 
Sbjct: 143 IDDVMRLPERLTGSG------GNLFMLEVHGDSMIDAAICNGDFVVVREQHTAVNGDIVA 196

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K    +    + LM  N  Y     + +    + +++
Sbjct: 197 ALLD-GEATVKTF-RKDKGHVWLMPHNPAYSPI--DGTYATIMGKVV 239


>gi|309803473|ref|ZP_07697567.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
           11V1-d]
 gi|325913387|ref|ZP_08175754.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
           60-B]
 gi|308164482|gb|EFO66735.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
           11V1-d]
 gi|325477313|gb|EGC80458.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
           60-B]
          Length = 441

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 36/236 (15%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + +++N+    LA K G    ++ ++ ++         P  + + +I    +  + 
Sbjct: 213 NLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYT-----PKIKVLAQIADIFHVDLD 267

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------------------- 109
            L++   ++ +T   K+  +  +    S       + V+                     
Sbjct: 268 DLMNKDLTNSQTKVDKDSLVEQIAETSSLLHISRQAKVYNYAKEQLDEQNSGINEKRSIY 327

Query: 110 -----PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                  G               +        D     +  SM P      I+  +    
Sbjct: 328 VVGTSAAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPT 384

Query: 165 VNCGDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +  G+  + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 385 LEIGEIGIFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 440


>gi|255655884|ref|ZP_05401293.1| SOS regulatory protein [Clostridium difficile QCD-23m63]
          Length = 211

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 26/221 (11%)

Query: 3   SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             + K+  I E I          P+   +    GL  TS   S                +
Sbjct: 4   DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 51

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K+     +             +  +       ++  P           +    N    +
Sbjct: 52  EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 110

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P             + +   K +  SM+       D ++++          ++     
Sbjct: 111 PFPASLVKG-------SNNFVLKVKGESMINAGILDEDYVVVDKKNTAFNSQIVVALING 163

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                K      G  I L   N       +  S++E +  +
Sbjct: 164 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 203


>gi|323495549|ref|ZP_08100623.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323319430|gb|EGA72367.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 201

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 37/226 (16%)

Query: 7   KKIWEAIDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           K I   ID + +   LT +     LA+  G+ P +    K       + +   E I K  
Sbjct: 2   KHIDTQIDELKK---LTKTAKNVDLAKVLGISPKTIQSWKSREKIPEDIFLKAEEIAK-- 56

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                          S       + K   +      GS    +                E
Sbjct: 57  -------------TGSVAPKGYLELKYYDVEVSAGHGSLVEKEEESNAM-------VFSE 96

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                   +           +  SM P  +   I+++N     +     + +   G ++ 
Sbjct: 97  RFIRQELGF-NPNNIFLMPVRGDSMSPTLKNQSIVMVNRVDGFSNDGIYVFRFD-GRLMV 154

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-----EWIARILWASQ 223
           K +       I ++S N  Y    +  SDI     E I  ++W+ Q
Sbjct: 155 KRIQFLPHG-IKVVSDNSAYEPWELAKSDIQSADFEIIGEVVWSGQ 199


>gi|229490829|ref|ZP_04384664.1| repressor LexA [Rhodococcus erythropolis SK121]
 gi|229322219|gb|EEN88005.1| repressor LexA [Rhodococcus erythropolis SK121]
          Length = 242

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I          PS   +    GL  TS   ++ +    +G  R          
Sbjct: 29  QRRVLEVIRDSVTERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDPNRPRAVD 88

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +   +E          S           +P   F P          +       +   +P
Sbjct: 89  VRGLDEVAADTAIASVSKHSGEHNSADPLPEPAFVPILGRIAAGGPILAEEAVEDVFPLP 148

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       Q      K    SM+      GD +++        GD +      G+ 
Sbjct: 149 RELVG-------QGSLFMLKVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID-GEA 200

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K       + + LM  N  +       ++   + +++
Sbjct: 201 TVKTFKR-TKKEVWLMPHNDLFEPI--PGNNAVILGKVV 236


>gi|260101385|ref|ZP_05751622.1| transcriptional repressor LexA [Lactobacillus helveticus DSM 20075]
 gi|260084796|gb|EEW68916.1| transcriptional repressor LexA [Lactobacillus helveticus DSM 20075]
          Length = 208

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 29/221 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           +     +I   I    +     P+   +     L  TS        +E +       +  
Sbjct: 6   SDTKQLEILRYIYDTVDHRGFPPTVREICAAVKLSSTSTVHGHLARLERKGLLIKDATKP 65

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + L  T+E   +L             K K IP++    +G             +      
Sbjct: 66  RALEITDEGKKELGI-----------KPKRIPVVGVVAAGHPI------LAVQDIDEYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P              +    K    SM+      GD +I+      N G+ ++      
Sbjct: 109 LPPDLENDA------GELFMLKIHGESMINAGILNGDNVIVKKQNTANNGEIVVAMTDEN 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K     +     L   N       +   ++  + +++
Sbjct: 163 EATVKRFYKEKD-HYRLQPENDTMAPIILP--EVTILGKVV 200


>gi|90419608|ref|ZP_01227518.1| SOS response transcriptional repressor LexA [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336545|gb|EAS50286.1| SOS response transcriptional repressor LexA [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 239

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 58/234 (24%), Gaps = 16/234 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +     +   ++       + PS    K  LD  S +   R       R      P+ 
Sbjct: 1   MLTRKQHDLLVFVNDRVRETGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNR 60

Query: 56  ESIFKILAAT---------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
               +IL                           R T +            S S      
Sbjct: 61  ARALEILKLPESIQGNRPAPVGRTGFKPSVIEGSRDTARPAPASQPSPAKASASTAIPVM 120

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV 165
           G    G   + +                 +    + +  SM       GD +++      
Sbjct: 121 GRIAAGVPISAIQHNTHSIVVPPDMLGSGEHYALEVKGDSMIEAGILDGDTVVIRRGDTA 180

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+ ++      +   K    R G +I L + N  Y         ++   +++
Sbjct: 181 TPGEIVVALVDDEEATLKRFRRR-GDTIALEAANPAYETRIFGSDRVKVQGKLI 233


>gi|323705365|ref|ZP_08116940.1| transcriptional repressor, LexA family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535267|gb|EGB25043.1| transcriptional repressor, LexA family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 207

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 40/225 (17%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPST 55
           S   ++I + I    +R    PS   + +  GL  TS      ++ ++ G     R P+ 
Sbjct: 8   SVKQQEIIDFIKSEIKRKGYPPSVREIGKAVGLRSTSTVHGHLSRLEKKGYI--RRDPTK 65

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
               ++L+   + I  ++ LP     T                              N  
Sbjct: 66  PRAIEVLSNDEKYISDVVKLPVIGKVTAGTPI---------------------LAVQNIE 104

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
               VP            +++    K +  SM+      GD +I+      + GD ++  
Sbjct: 105 EYYSVPRDLITGY-----ESESFILKVRGESMINAGILDGDYIIIRKQSYADNGDIVVAL 159

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K         I L   N       V   D+  + +++
Sbjct: 160 M-EDEATVKRFYK-ENNHIRLQPENPSMNPIIV--DDVMILGKVV 200


>gi|117926640|ref|YP_867257.1| phage repressor [Magnetococcus sp. MC-1]
 gi|117610396|gb|ABK45851.1| putative phage repressor [Magnetococcus sp. MC-1]
          Length = 215

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 22/224 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  + + I + A++   +   LAR +G+   +         E     P    +  I  A 
Sbjct: 2   HAALSQRIRQCAQKVG-SGDTLARLSGIPRRTIETYLTGQSE-----PKASRLVAIAQAA 55

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           +  +  L     S   ++   ++   +  +    S G         G   +   + E  +
Sbjct: 56  DVDVGWLACGQASQMESSLPDDEYTLVPRYAVEASAGH--------GGAIDEEPIVEKLA 107

Query: 126 PHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
             +     +      +         SM P  R GD+L+L+        D + +      +
Sbjct: 108 FKSDWIIGEMGLDSERLALINVHGDSMEPTLRGGDMLLLDLRRVEVRDDAIYVLRLENHL 167

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221
           + K        +I + S N  Y   +        +  I R++W 
Sbjct: 168 IVKRAQRMLDGTILIRSDNPIYKEQSASPEQARQLCVIGRVVWV 211


>gi|319942646|ref|ZP_08016954.1| hypothetical protein HMPREF9464_02173 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803825|gb|EFW00757.1| hypothetical protein HMPREF9464_02173 [Sutterella wadsworthensis
           3_1_45B]
          Length = 219

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 75/214 (35%), Gaps = 8/214 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I   I  +     L+   L++  G++  S ++     + G+NR PS + +  +    +
Sbjct: 2   NDIATRIAGLVNESGLSLRTLSKAIGVNHVSLSQW----VTGKNR-PSDKGLEALCLYFH 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRS 125
            +   +L    S       + ++   +    +         +   G    T V V     
Sbjct: 57  VSPAWVLYGDDSAAGAQSIRLEDAISIPLLEAEGACGAREDLSQYGCGIITMVRVTYEFI 116

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            +    A          +  SM+P    GD +I++ + +    D L      G  + K +
Sbjct: 117 RNYCPSASMNSLHIITAKGDSMMPTLNNGDAVIVDVSQRDVTQDGLYAVELGGSTLIKRI 176

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
                + + L+S N  Y   T++  D +  I R+
Sbjct: 177 Q-ITHKGLLLLSDNTKYKPFTIDDGDTLNVIGRV 209


>gi|293446716|ref|ZP_06663138.1| repressor protein CI prophage [Escherichia coli B088]
 gi|291323546|gb|EFE62974.1| repressor protein CI prophage [Escherichia coli B088]
 gi|332344176|gb|AEE57510.1| phage repressor protein [Escherichia coli UMNK88]
          Length = 237

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 73/233 (31%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGVNALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 66  --LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++              P +  G +++++    V+ GD 
Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPA---GSKPSFPDGMLILVDPEQPVDPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  +P+      +   + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIKDSGQVF-LQPLNPQFPIIPCN-ENCNIVGKVI-ASQ 230


>gi|302129811|ref|ZP_07255801.1| putative phage repressor [Pseudomonas syringae pv. tomato NCPPB
           1108]
          Length = 259

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 65/259 (25%), Gaps = 52/259 (20%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E I    +  +LT S LA K G+  T+ ++ +        +   +  + +I      
Sbjct: 2   NLSERIKLARKEAHLTQSELAEKVGIAQTAISQLESG------KTLRSSYLLQIAQECGV 55

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------- 117
               L           + K+     L    SG              +             
Sbjct: 56  NSLWLQTGEGDIHTLEDPKDLWAAALEELVSGEHEDDAPLNNAVRKRIEALQAVSKFAPS 115

Query: 118 -----------VGVPEIRSPHNGIYAIQ-------------------TQDTRHKTQDTSM 147
                      + + +   P      I                               SM
Sbjct: 116 NSLLTSEIPYLIELDDPDDPSRTAVEISATARLDLNNEILEKQGVGAEHVVAVAISGNSM 175

Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV--- 204
            P+   G  ++ N    +    ++ +    G I  K L    G  I + S N        
Sbjct: 176 SPVLHDGSTVLANMNESLVVDGKMYVIDHGGQIRVKALYRLPGGGIRVRSYNTAEHPDET 235

Query: 205 ---DTVEMSDIEWIARILW 220
                +E S I  + R+ W
Sbjct: 236 YTAREMEDSRIRIMGRVFW 254


>gi|238912285|ref|ZP_04656122.1| hypothetical protein SentesTe_14286 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|322630423|gb|EFY27193.1| hypothetical protein SEEM974_08176 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322651967|gb|EFY48330.1| hypothetical protein SEEM675_00697 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656140|gb|EFY52437.1| hypothetical protein SEEM965_14889 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322687525|gb|EFY83495.1| hypothetical protein SEEM600_12912 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323198546|gb|EFZ83648.1| hypothetical protein SEEM501_10742 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323208404|gb|EFZ93343.1| hypothetical protein SEEM020_08396 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323235549|gb|EGA19633.1| hypothetical protein SEEM3312_11496 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323241293|gb|EGA25329.1| hypothetical protein SEEM5258_17159 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245034|gb|EGA29036.1| hypothetical protein SEEM1156_21987 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
          Length = 234

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 58/214 (27%), Gaps = 18/214 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               ++  LT   LA   G    +             R PS E I  I+         L 
Sbjct: 24  KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 78

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130
                D   +       P  +        F        GN    +    + EI       
Sbjct: 79  SDGMVDYPDSNLNNVSSPRPHTE---IRRFPLISWVSAGNWCEAIEPYQLREIEVWPETT 135

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
                +      +  SM         +G  ++++ AI+   G  ++       +   K  
Sbjct: 136 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKY 195

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I   G+   L  LN  Y +  +  +    I  ++
Sbjct: 196 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 227


>gi|110598195|ref|ZP_01386472.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340209|gb|EAT58707.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Chlorobium
           ferrooxidans DSM 13031]
          Length = 241

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 64/236 (27%), Gaps = 33/236 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR--------------NRWP- 53
           +   I  + +   L       K GL     ++ +      +                W  
Sbjct: 7   LGTRIKSVRDHFGLRQEEFGEKIGLSGNRVSEIENDKGGTKASVLISICQEFPLNPEWLL 66

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
               S+ K    +  +  +             ++     +    PS +     S   P G
Sbjct: 67  SGEGSMLKKPEESGISPDEFSRRITLL-EKQMQQFVINTIEPESPSLAKVPLYSSAVPAG 125

Query: 113 -------NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
                       + +P   +        +      K    SM+ +    GD+L++ +   
Sbjct: 126 MPDPASDEIEEYLDMPASWAQG------KKNIYALKVNGDSMVDIGIMPGDLLMVEARTT 179

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
              G  ++     G++  K L      +I LM  N  YP   +    D      ++
Sbjct: 180 ARDGQVVVACIN-GEVTVKTLCISNTGTISLMPENKRYPPIAITADMDFRIQGVVM 234


>gi|145634268|ref|ZP_01789979.1| probable transcription regulator [Haemophilus influenzae PittAA]
 gi|145268712|gb|EDK08705.1| probable transcription regulator [Haemophilus influenzae PittAA]
          Length = 237

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 70/222 (31%), Gaps = 12/222 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATN 66
           I   I  + E   ++ + +A K GL  ++    +    E       T  E +        
Sbjct: 11  IGNRIRELREFKKVSRNAMAEKLGLSLSALQNWETNQTEPVASMIITLAEELEVSPNYLL 70

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEI 123
                      S+  T  + E    +               +   G      + + V + 
Sbjct: 71  TGETNATLDENSNRITLRESENSRSVADDEGFEWIDDCRDVIVTAGYGGINSDYLEVKKT 130

Query: 124 RSPHNGIYAIQ---TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +     + A         ++K    SM    + G+ +I+N A +     ++ +    G +
Sbjct: 131 KIEREWLRARGLKAEDCGKYKVCGDSMDDTLKDGEDIIVNHASKTLIDGKIFVLNNQGSM 190

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
           + K +       ++L+S N  Y    +   + +    I +++
Sbjct: 191 LIKRIQRTFSG-VELISDNNAYRPIKLTAEEADSLLVIGQVV 231


>gi|302391940|ref|YP_003827760.1| SOS-response transcriptional repressor, LexA [Acetohalobium
           arabaticum DSM 5501]
 gi|302204017|gb|ADL12695.1| SOS-response transcriptional repressor, LexA [Acetohalobium
           arabaticum DSM 5501]
          Length = 207

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 58/224 (25%), Gaps = 29/224 (12%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   S   ++I   I     +    PS   +A   GL   S   S    +E ++      
Sbjct: 1   MEDLSARQQQILNFIIEEINQKGYPPSVREIADAVGLSSPSTVHSHLTTLEEKDYIRKDP 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +  + +   +E I +              +      +                   N  +
Sbjct: 61  TKPRAIEVLHEPISEEETEKEMVNIPLLGRVTAGKPI---------------LAVENIED 105

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
           T  +               Q      +  SM       GD +I+         D ++   
Sbjct: 106 TFPISLEYISDTT-----DQLFMLTVEGESMIEAGILDGDYVIVKQQNTAQNRDIVVALL 160

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              ++  K         I L   N          SD++ + +++
Sbjct: 161 DK-EVTVKRFFKEED-HIRLQPENETMEPII--TSDVQILGKVV 200


>gi|260683547|ref|YP_003214832.1| SOS regulatory protein [Clostridium difficile CD196]
 gi|260687207|ref|YP_003218341.1| SOS regulatory protein [Clostridium difficile R20291]
 gi|260209710|emb|CBA63461.1| SOS regulatory protein [Clostridium difficile CD196]
 gi|260213224|emb|CBE04725.1| SOS regulatory protein [Clostridium difficile R20291]
          Length = 226

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 53/221 (23%), Gaps = 26/221 (11%)

Query: 3   SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             + K+  I E I          P+   +    GL  TS   S                +
Sbjct: 19  DLTEKQVLILEFIKSQITLKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 66

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K+     +             +  +       ++  P           +    N    +
Sbjct: 67  EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 125

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P             + +   + +  SM+       D ++++          ++     
Sbjct: 126 PFPASLVKG-------SNNFVLRVKGESMINAGILDEDYVVVDKKNTALNSQIVVALING 178

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                K      G  I L   N       +  S++E +  +
Sbjct: 179 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 218


>gi|322513460|ref|ZP_08066571.1| transcriptional activator-regulatory protein [Actinobacillus ureae
           ATCC 25976]
 gi|322120719|gb|EFX92602.1| transcriptional activator-regulatory protein [Actinobacillus ureae
           ATCC 25976]
          Length = 218

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 60/211 (28%), Gaps = 9/211 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I+R  E   L    LA    +   +         + + R      + +I       
Sbjct: 4   LGERIERAMESKGLKRKDLAEALNISKMAVGDLINNKTK-KPR-----YLVEIADVLGVD 57

Query: 69  ICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  L        +      E+   +++   +                   +     +   
Sbjct: 58  VKWLQTGEGDISKHNLTLTEESDEIVFNMLNVQASASFGVNGDIVQIVRQIKYNATQYYD 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                          +  SM P +  GD+L ++  IQ   GD + +      I  K +  
Sbjct: 118 FYRGMNPDNVEIISVKGDSMAPTFCHGDLLFVDITIQEYDGDGIYVFTYDNYIFVKRIQK 177

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             G +  ++S N  Y    +  S+     ++
Sbjct: 178 -TGNTFTVLSDNKRYKDWEI-KSEYHIHGKV 206


>gi|312870912|ref|ZP_07731017.1| putative repressor LexA [Lactobacillus iners LEAF 3008A-a]
 gi|312872198|ref|ZP_07732271.1| putative repressor LexA [Lactobacillus iners LEAF 2062A-h1]
 gi|311092282|gb|EFQ50653.1| putative repressor LexA [Lactobacillus iners LEAF 2062A-h1]
 gi|311093602|gb|EFQ51941.1| putative repressor LexA [Lactobacillus iners LEAF 3008A-a]
          Length = 239

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 58/220 (26%), Gaps = 25/220 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K+I   + +    H +T + LA K+ +  T+ +   R          + E +   L   
Sbjct: 14  RKEISSNLKKFM--HGMTQADLAEKSDIPLTTLSGYLREKST--PNSGNLEKLAIALNVK 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEI--------------PLLYFPPSGSGGFFDSGVFPT 111
              I              +    E                ++   P          +   
Sbjct: 70  KSDIDPRYTFTDIMDFVEKAPLGEYISPVSNVEYLYNTDTVVKQIPLLGDIACGDPITAD 129

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR- 170
            N  + +        +             KT+  SM P    G I+I+     V  G+  
Sbjct: 130 ENIEDYIP-----ETYTRGNVPSGTLFALKTKGHSMEPTIPDGSIVIIRQQPNVEDGEIA 184

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            ++         K +      ++ L   N  Y    +  +
Sbjct: 185 AVLVDDDARATLKRI-KHSNDAVILQPDNREYDPIVLTPN 223


>gi|296879189|ref|ZP_06903184.1| repressor lexA [Clostridium difficile NAP07]
 gi|296429732|gb|EFH15584.1| repressor lexA [Clostridium difficile NAP07]
          Length = 215

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 26/221 (11%)

Query: 3   SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             + K+  I E I          P+   +    GL  TS   S                +
Sbjct: 8   DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K+     +             +  +       ++  P           +    N    +
Sbjct: 56  EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P             + +   K +  SM+       D ++++          ++     
Sbjct: 115 PFPASLVKG-------SNNFVLKVKGESMINAGILDEDYVVVDKKNTAFNSQIVVALING 167

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                K      G  I L   N       +  S++E +  +
Sbjct: 168 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 207


>gi|257438216|ref|ZP_05613971.1| LexA repressor [Faecalibacterium prausnitzii A2-165]
 gi|257199293|gb|EEU97577.1| LexA repressor [Faecalibacterium prausnitzii A2-165]
          Length = 211

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 62/203 (30%), Gaps = 21/203 (10%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
            + +   ++ S  A++ GL  ++  K K  G       PS E++ ++ A     + +LL 
Sbjct: 8   ALCQARGISRSRAAQEMGLSNSTVTKWKNTGAT-----PSGETLARVSAYFGVPVGELLG 62

Query: 75  LPFSDGRTT---EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                 +      +           P          ++   N    + +           
Sbjct: 63  EAVPSVQEERKLPEGAVPFDPALTAPLLGTVRAGLPMYAEENIEGYIPITR--------- 113

Query: 132 AIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
               +    + +  SM  +   + D +++    +V  G   ++     +   K    + G
Sbjct: 114 KDGARYFWLRVRGDSMNAVGISENDEILVREQPEVENGQLAVVMVNGDEATVKYF-RQEG 172

Query: 191 RSIDL--MSLNCCYPVDTVEMSD 211
             + L   S N  +     ++  
Sbjct: 173 SLVVLTPKSFNPVHQPQIYDLKR 195


>gi|126090267|ref|YP_001041722.1| putative phage repressor [Shewanella baltica OS155]
 gi|125999898|gb|ABN63967.1| putative phage repressor [Shewanella baltica OS155]
          Length = 213

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 11/216 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           KKI   I    +   LT   L    G+   S +  +             E + K+     
Sbjct: 2   KKIGHRIKTRRKLKGLTQEALGLAVGVSKVSVSSWELGKNSMHP-----ELLNKVAGVLG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                LL          EK        Y     + G             + V +P     
Sbjct: 57  VDAHWLLTGESFATLEDEKDSVFWAPKYKNIKAAAGAGCCHDDCLDEDEDEVPIPIKFVK 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
           +      + Q         SM P+   G I+ +NS+  +    ++ +  +   +  KV+ 
Sbjct: 117 NQT---NKDQIFCVCVSGDSMEPVLSDGSIIAMNSSDTIIKDGKMYLVKQDDLLRVKVIH 173

Query: 187 SRRGRSIDLMSLNCCYPVDT--VEMSDIEWIARILW 220
                 + L S N  +  +T  ++  +I+ + R+ W
Sbjct: 174 LLPKDMV-LKSYNPNFKDETYNIKKDNIQILGRVFW 208


>gi|319776463|ref|YP_004138951.1| putative prophage repressor CI [Haemophilus influenzae F3047]
 gi|329123953|ref|ZP_08252504.1| LexA family repressor/S24 family protease [Haemophilus aegyptius
           ATCC 11116]
 gi|317451054|emb|CBY87286.1| Putative prophage repressor CI [Haemophilus influenzae F3047]
 gi|327468035|gb|EGF13524.1| LexA family repressor/S24 family protease [Haemophilus aegyptius
           ATCC 11116]
          Length = 218

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 34/224 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58
           + E I    E+  ++   LA +                     ++       R P  E I
Sbjct: 4   LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             I  A N     L ++   D   +E KE         P  +G + D       + +  +
Sbjct: 59  SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
               I S               + +  SMLP + +GD+++++  I    G  ++      
Sbjct: 115 PSTVIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVVAINGDN 165

Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216
           +   K       +        +L+ LN  +P  +    +I  I 
Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209


>gi|48697282|ref|YP_025049.1| putative repressor protein [Lactobacillus phage phiAT3]
 gi|47607173|gb|AAT36509.1| putative repressor protein [Lactobacillus phage phiAT3]
          Length = 257

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 70/256 (27%), Gaps = 50/256 (19%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + ++  ++   LA K G+  ++  + ++  IE        E + K+  A N 
Sbjct: 2   NVGERMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVP----IEVVAKVANALNI 57

Query: 68  TI--------------------------------CQLLDLPFSDGRTTEKKEKEIPLLYF 95
                                                  L     R       E  +   
Sbjct: 58  KPEVLMGLKADTVVDKIHDTVVQLHPERQQKVYTYAEKQLNEQQNRDNVVSLDEAHVERN 117

Query: 96  PPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
               +      G+   G     +    P               D   K    SM P Y  
Sbjct: 118 LDEPAFNVEVDGIVAAGYGAFNDDRDEPMDTVKIPDSAIPAHYDYCFKVVGDSMHPTYDD 177

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---------YPV 204
           G+++ +     V  G   +     G    K LI      + L SLN           YP 
Sbjct: 178 GELVFVQKTQDVTNGMIAV-VDINGMTFIKKLIFEEN-RLCLRSLNDDVDEKTGERIYPD 235

Query: 205 DTVEMSD-IEWIARIL 219
              + +D I+ I +++
Sbjct: 236 FYADETDNIDVIGKVV 251


>gi|304436723|ref|ZP_07396691.1| repressor LexA [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370203|gb|EFM23860.1| repressor LexA [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 214

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 55/222 (24%), Gaps = 34/222 (15%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58
           ++    +I + I          PS   +    GL   ++ ++                  
Sbjct: 17  STRRQSEILDYIKEFLVEKGYPPSVREIGTAVGLKSSSTVHRYLS--------------- 61

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +L                D        + IP+               +    N  +  
Sbjct: 62  --MLEENGMIRRDATKPRAIDIMGENPWGRTIPVPLV----GVVTAGEPILAEQNVEDVF 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P                   + Q  SM+ +    GD +++      N GD ++     
Sbjct: 116 SFPRGLLGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALVNG 169

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                K     +   I L   N          +D++ + +++
Sbjct: 170 ESATVKRFFREK-TCIRLQPENDSMEPFY--ETDVQILGKVI 208


>gi|238765601|ref|ZP_04626506.1| 26 kDa repressor protein [Yersinia kristensenii ATCC 33638]
 gi|238696181|gb|EEP88993.1| 26 kDa repressor protein [Yersinia kristensenii ATCC 33638]
          Length = 236

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 4/191 (2%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           T    A KAGLDPT  ++      +   R    ++  +I  A       +  L  +    
Sbjct: 25  TQREFADKAGLDPTVVSRMLYPVGKTHKRNIGEQAARQIENALKIERGWMDGLGSASMNC 84

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPHNGIYAIQTQDTR 139
            E       +              G +   +  +    +      +              
Sbjct: 85  AEIPAINHDVYRVEVLDLTVSAGPGSYLLSDYIDVLYAIEFTTEHARSLFGNRKPEDVKV 144

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
                 SM P    GD L ++ +++    D +           K L  + G  + ++S N
Sbjct: 145 MTVSGDSMAPTLVAGDRLFVDISVRHFLTDGVYSFVFGKTFHVKRLQMQ-GNKLAVLSDN 203

Query: 200 CCYPVDTVEMS 210
             Y    +   
Sbjct: 204 PAYEKWYITED 214


>gi|284032587|ref|YP_003382518.1| SOS-response transcriptional repressor, LexA [Kribbella flavida DSM
           17836]
 gi|283811880|gb|ADB33719.1| SOS-response transcriptional repressor, LexA [Kribbella flavida DSM
           17836]
          Length = 262

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 56/217 (25%), Gaps = 7/217 (3%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +++ + I    +     PS   +  + GL  +S    +   +E +       +  + + 
Sbjct: 44  QRRVLDVIRDSVDSRGYPPSMREIGERVGLTSSSSVSHQLRVLEQKGLLRRDPNRPRAIE 103

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                +   +          +      G    G         E 
Sbjct: 104 VRYPGEVADAAARRGSVGAVRQTAYDETGAGDAHPAAAYVPVVGRIAAGGPILAEQDIEE 163

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P       +      + +  SM       GD +++        GD +      G+   
Sbjct: 164 VFPLPKAMVGEGTLFMLRVKGESMIEAAICDGDWVVVRQQPNAENGDIVAAMID-GEATV 222

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K    +    I L+  N  +     +  D   + +++
Sbjct: 223 KTF-KKTENEIWLLPHNPAFEPI--DGHDATILGKVV 256


>gi|325687772|gb|EGD29793.1| phage transcriptional repressor [Streptococcus sanguinis SK72]
 gi|327461118|gb|EGF07451.1| phage transcriptional repressor [Streptococcus sanguinis SK1057]
          Length = 242

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 67/223 (30%), Gaps = 19/223 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNET 68
            + + +      +T + +A    ++ +S+N  +    +   +  S   SI  +     E+
Sbjct: 17  GKRLKQKRIEKGMTQAEIADIIRINRSSYNSWESGRAKPNQKNLSALASILGVSDTYFES 76

Query: 69  ICQLLDLPFSDGRTTEKKE--------KEIPLLYFPPSGSGGFFDSGVFPTGNK---WNT 117
              +++         ++K         +           +           G+    ++ 
Sbjct: 77  EYDIMNHYLQLNPMNQQKADNYVEDLLQSQEQKKTIQLFAVEVLSDITLSAGSGRAFFDE 136

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                + S           D     Q  SM P+Y  G+I ++ +      G  +      
Sbjct: 137 QETETVYSDEEQY----GYDVAAWIQGDSMKPVYEDGEIALIRATGFDYDG-AVYALSWN 191

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
             +  K L         ++SLN  YP   +    +   +  ++
Sbjct: 192 ESVYIKRLYREENG-FRMVSLNKKYPDRFIPFEDEPRIVGLVV 233


>gi|313141175|ref|ZP_07803368.1| lambda repressor [Bifidobacterium bifidum NCIMB 41171]
 gi|313133685|gb|EFR51302.1| lambda repressor [Bifidobacterium bifidum NCIMB 41171]
          Length = 242

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 11  KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 70

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112
              I K+                 +  + +   +             G F      F  G
Sbjct: 71  LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 130

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +    V   +  S       ++       T      P +  G +++++    V  GD  +
Sbjct: 131 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 187

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 188 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 235


>gi|224284017|ref|ZP_03647339.1| Repressor protein CI from prophage [Bifidobacterium bifidum NCIMB
           41171]
          Length = 281

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 50  KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 109

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112
              I K+                 +  + +   +             G F      F  G
Sbjct: 110 LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 169

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +    V   +  S       ++       T      P +  G +++++    V  GD  +
Sbjct: 170 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 226

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 227 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 274


>gi|27261132|gb|AAN86071.1| heat-sensitive lambda citS857 repressor protein/VP16 fusion protein
           [synthetic construct]
          Length = 367

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112
              I K+                 +  + +   +             G F      F  G
Sbjct: 66  LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +    V   +  S       ++       T      P +  G +++++    V  GD  +
Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|210610265|ref|ZP_03288320.1| hypothetical protein CLONEX_00506 [Clostridium nexile DSM 1787]
 gi|228474131|ref|ZP_04058871.1| repressor protein CI [Capnocytophaga gingivalis ATCC 33624]
 gi|239622955|ref|ZP_04665986.1| lambda cI857 repressor [Clostridiales bacterium 1_7_47_FAA]
 gi|254708517|ref|ZP_05170345.1| Repressor protein CI [Brucella pinnipedialis M163/99/10]
 gi|261316018|ref|ZP_05955215.1| repressor protein [Brucella pinnipedialis M163/99/10]
 gi|261343115|ref|ZP_05970973.1| repressor protein CI [Enterobacter cancerogenus ATCC 35316]
 gi|282875750|ref|ZP_06284618.1| peptidase, S24 family [Staphylococcus epidermidis SK135]
 gi|283836773|ref|ZP_06356514.1| repressor protein CI [Citrobacter youngae ATCC 29220]
 gi|208651|gb|AAA99919.1| lambda repressor [Cloning vector pNO3097]
 gi|2961156|gb|AAC27033.1| lambda repressor [site-specific excision vector pFLP2]
 gi|4732119|gb|AAD28615.1| repressor protein [Cloning vector pWD42-09]
 gi|4928118|gb|AAD33415.1| lambda cI857 repressor [Cloning vector pWDYcos1.0.1]
 gi|16209070|gb|AAL09847.1| cI [CRIM helper plasmid pAH57]
 gi|16209082|gb|AAL09855.1| cI [CRIM helper plasmid pAH69]
 gi|16209093|gb|AAL09862.1| cI [CRIM helper plasmid pAH83]
 gi|16209106|gb|AAL09870.1| cI [CRIM helper plasmid pAH121]
 gi|16209112|gb|AAL09874.1| cI [CRIM helper plasmid pAH122]
 gi|16209120|gb|AAL09879.1| cI [CRIM helper plasmid pAH123]
 gi|16209126|gb|AAL09883.1| cI [CRIM helper plasmid pAH129]
 gi|16209132|gb|AAL09888.1| cI [CRIM helper plasmid pAH130]
 gi|16209138|gb|AAL09892.1| cI [CRIM helper plasmid pAH131]
 gi|16209182|gb|AAL09915.1| cI [CRIM helper plasmid pINT-ts]
 gi|47027959|gb|AAT08997.1| lambda repressor [Flp expression vector pFLP3]
 gi|55975982|gb|AAV68247.1| repressor [Broad host range Red recombinase expression vector
           pRKcIRed]
 gi|154814537|gb|ABS87301.1| CI [Cloning vector pCPP5264]
 gi|157955302|gb|ABW06020.1| cI857 [Triparental mating vector pCD13SK-Flp-oriT]
 gi|164470280|gb|ABY57979.1| CI857 [Cloning vector pFlpAB-3]
 gi|164470289|gb|ABY57987.1| CI857 [Cloning vector pFlpAB-4]
 gi|164600695|gb|ABY61785.1| CI857 [Flp expression vector pFlpAB-5]
 gi|197091802|gb|ACH42113.1| CI857 [Vector pCD13SK-Flp-oriT-Easd]
 gi|210152569|gb|EEA83575.1| hypothetical protein CLONEX_00506 [Clostridium nexile DSM 1787]
 gi|215789977|gb|ACJ70060.1| CI857 [Cloning vector pFlp-AB7]
 gi|225423174|gb|ACN91079.1| lambda repressor [Site-specific excision vector pBBR1_FLP2]
 gi|228274403|gb|EEK13256.1| repressor protein CI [Capnocytophaga gingivalis ATCC 33624]
 gi|239522634|gb|EEQ62500.1| lambda cI857 repressor [Clostridiales bacterium 1_7_47FAA]
 gi|261305044|gb|EEY08541.1| repressor protein [Brucella pinnipedialis M163/99/10]
 gi|281295465|gb|EFA87991.1| peptidase, S24 family [Staphylococcus epidermidis SK135]
 gi|288314592|gb|EFC53530.1| repressor protein CI [Enterobacter cancerogenus ATCC 35316]
 gi|291067231|gb|EFE05340.1| repressor protein CI [Citrobacter youngae ATCC 29220]
          Length = 237

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112
              I K+                 +  + +   +             G F      F  G
Sbjct: 66  LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +    V   +  S       ++       T      P +  G +++++    V  GD  +
Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|315226753|ref|ZP_07868541.1| LexA repressor [Parascardovia denticolens DSM 10105]
 gi|315120885|gb|EFT84017.1| LexA repressor [Parascardovia denticolens DSM 10105]
          Length = 278

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 66/249 (26%), Gaps = 47/249 (18%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNR------------ 51
           ++ EAI   +      PS   +A   GL  TS   ++      +G  R            
Sbjct: 34  QVLEAIRHYSTSQGYIPSFREIAALVGLKSTSSVKHQLDVLEKKGYIRMAANKGRAIELI 93

Query: 52  --------------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
                                P  E+  +  A    +              ++ + + I 
Sbjct: 94  TSEEPQSITEQEISDGESDLEPKDENQDRETAENEGSGRPTSARAEIYPFPSQSESESIA 153

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150
             +  P          +    +  + + +PE  +        +      +    SM+   
Sbjct: 154 QSHDVPLVGRIAAGVPITAEQHVDDVMRLPERLTG-------EGTLFMLEVHGDSMVDAA 206

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              GD +++        GD +       +   K     +   + LM  N  Y       +
Sbjct: 207 ICDGDFVVIREQKTAENGDIVAALLD-DEATVKTFRRDKSGHVWLMPHNPAYSPIDGTYA 265

Query: 211 DIEWIARIL 219
               + +++
Sbjct: 266 Q--IMGKVV 272


>gi|306830635|ref|ZP_07463800.1| XRE family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304427143|gb|EFM30250.1| XRE family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 245

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 70/236 (29%), Gaps = 31/236 (13%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + I    + + +T   LA K G+ P++     +         PS   I KI     
Sbjct: 12  QIIADNITYYRKLNGITQKELAEKIGIKPSTMTDYMKLRS-----APSYGIIQKIADYFG 66

Query: 67  ETICQLLDLPFSDGRTTEKKE--------KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                +          +E +         ++  +L +         +         +   
Sbjct: 67  VKKSDIDSTFKIAEEKSEIQSVYDKLYKCRQRKVLNYANQQLNEQENEVNNVV-QLFEYD 125

Query: 119 GVPEIRSPHNGIYAIQ------------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                 S   G +                 D        SM P Y  GD + +  ++ ++
Sbjct: 126 YYDNAVSAGTGQFLSDVQKETITLPVEYDADFVVPVYGDSMEPEYHSGDYVFVKLSVDLS 185

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS-DIEWIARIL 219
            GD  +     GD   K +I        L SLN    Y   +V+   D   I +++
Sbjct: 186 SGDIGV-FELYGDAYIKEII-IEDNHALLHSLNTNGNYKDISVDADSDFRVIGKVV 239


>gi|291621991|emb|CAX65024.1| gp43 protein [Vibrio phage VP58.5]
          Length = 225

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 25/228 (10%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIF 59
                  I   + R+     LT   L+R     + P++ ++ +  G     +  +T    
Sbjct: 5   KRMIEIDIGPVLKRIRYERGLTLQKLSRLTDDKVLPSNISRIESAGAGATLKTLTT---- 60

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTV 118
            +  A   +   +L       +   K ++ + +       +G + +S   P  G+    V
Sbjct: 61  -LANALGTSPSDILREAEGGDKVITKPQQVLYVPVLSWVQAGTWTESPEQPADGDYDEWV 119

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY----RKGDILILNSAIQVNCGDRLLIK 174
             P   S          +    + Q  SM         +G  ++++   Q +    ++ +
Sbjct: 120 EAPRGASR---------KAFGLRVQGDSMQAPIGKSFPEGCCIVVDPTKQADNRSFVVAR 170

Query: 175 -PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220
              TG+   K LI        L  LN  Y    V  S++     +L W
Sbjct: 171 LADTGEHTFKQLIIDGPHQY-LKPLNPSYRTIEVN-SEVHVCGVVLAW 216


>gi|161507699|ref|YP_001577655.1| LexA repressor [Lactobacillus helveticus DPC 4571]
 gi|172048315|sp|A8YVS7|LEXA_LACH4 RecName: Full=LexA repressor
 gi|160348688|gb|ABX27362.1| transcriptional repressor protein [Lactobacillus helveticus DPC
           4571]
          Length = 208

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 29/221 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           +     +I   I    +     P+   +     L  TS        +E +       +  
Sbjct: 6   SDTKQLEILRYIYDTVDHRGFPPTVREICAAVKLSSTSTVHGHLARLERKGLLIKDATKP 65

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + L  T+E   +L             K K IP++    +G             +      
Sbjct: 66  RALEITDEGKKELGI-----------KPKRIPVIGVVAAGHPI------LAVQDIDEYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P              +    K    SM+      GD +I+      N G+ ++      
Sbjct: 109 LPPDLENDA------GELFMLKIHGESMINAGILNGDNVIVKKQNTANNGEIVVAMTDEN 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K     +     L   N       +   ++  + +++
Sbjct: 163 EATVKRFYKEKD-HYRLQPENDTMAPIILP--EVTILGKVV 200


>gi|306833460|ref|ZP_07466587.1| transcriptional regulator [Streptococcus bovis ATCC 700338]
 gi|304424230|gb|EFM27369.1| transcriptional regulator [Streptococcus bovis ATCC 700338]
          Length = 226

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-------NRWPST 55
            FS +K    +  + E    + + +A+   +   S+   +    +         +R    
Sbjct: 1   MFSGEK----LKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSRLLGV 56

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNK 114
           E  + +           L+            +                +        G  
Sbjct: 57  EETYFVSEYHIVDTYFKLNQDNRHKLENYADDLLKEQEKIVQLPKYYAYKVFEKLSAGTG 116

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           ++     +              D        SM P Y  G+++++        G  +   
Sbjct: 117 YSY--FGDGNYDTVFYDEQLDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AIYAV 173

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
              G    K +       + L+SLN  Y        +  + I +I+
Sbjct: 174 DWDGQTYIKKVYREEDG-LRLVSLNKHYADKFAPYDENPQIIGKIV 218


>gi|312945712|gb|ADR26539.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 212

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 55/211 (26%), Gaps = 23/211 (10%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           ++   LA+ +G+   +  +       G  +      I +I  A       L         
Sbjct: 1   MSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIANALGVRTEWLSSGIGPMRN 54

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--- 138
             ++  K        P              G         E+       +          
Sbjct: 55  DGQQLGKPTAN---HPKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGR 111

Query: 139 ------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                     +  SM      GD+L ++  ++   GD +           K L   +   
Sbjct: 112 KAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-K 170

Query: 193 IDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
           + ++S N  Y     +E  +   +    +++
Sbjct: 171 LLVISDNKSYSPWDPIEKDEMNRVFIFGKVI 201


>gi|329767341|ref|ZP_08258866.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341]
 gi|328836030|gb|EGF85721.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341]
          Length = 218

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 59/211 (27%), Gaps = 10/211 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  +  +  ++ + +A   G+   ++N  ++       +     +++  +  T     
Sbjct: 5   NRLKSLRAKRKVSQTAVAEYLGVTRAAYNSWEKGKYIPNKKNLEELALYFNVETTYFESE 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEIRSPH 127
             +   +       KK+          S    +        G     +       +    
Sbjct: 65  YEIVNKYLQLNDINKKKLLTIANELYISQLHKYQVHAKLSAGLGNFYYEDYEFDTVYFDK 124

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
           +  Y     D        SM P Y  G + ++        G  +       +   K +  
Sbjct: 125 DIPY-----DIASWIDGDSMEPKYHNGHVALIKKTGYDFDG-LVYAVVYNEETYIKKVY- 177

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
               +  L+S+N  Y      + ++  +  +
Sbjct: 178 LEENTARLVSINDNYKDIIAPIEEVHIVGIV 208


>gi|307608926|emb|CBW98330.1| putative repressor [Legionella pneumophila 130b]
          Length = 227

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 17/225 (7%)

Query: 1   MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT     K+I + I    +   LT   L   AG L  T     ++       R P  E I
Sbjct: 1   MTELNIKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGV-----RTPGPEEI 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +  A + +   L+ L         K   +       P             TG   ++ 
Sbjct: 56  KSLARALDVSPAYLMCLSDELQFKEAKNPSQ-----LIPLLDYRQACEATLHTGA-ESSG 109

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRT 177
               I    +    + T     K  D SM+P  R  D+L++  ++    GD + +     
Sbjct: 110 DKVFISVSTSLQPELSTDAFALKITDDSMMPEIRINDVLVIEPSVLPEPGDFVAVKINGK 169

Query: 178 GDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            + +              +L++LN  +P   V    +++ I  ++
Sbjct: 170 PETIICQYKKLSYTSSEFELLTLNDNWPNIKVSDDINVKIIGVLV 214


>gi|91200019|emb|CAJ73061.1| similar to transcriptional repressor [Candidatus Kuenenia
           stuttgartiensis]
          Length = 213

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 24/227 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +    ++ E +  +      +   LAR   +   +F   K+            E + +
Sbjct: 1   MYNIKFSEVTERLKEVLNTK--SEDDLARSLEITAQAFLSFKKQNEIPS------ELLVR 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                  +I  L+                   ++           +G     N W     
Sbjct: 53  FCLLNQVSIDWLIKGEQEKTSDYVSIPIYNAKIFSEEKAKEPEHAAGFMAFKNDWLMSEF 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                      A + +      +D SM P  + GD++I++    V   D L +    G  
Sbjct: 113 ----------GANKAKLYLFHVKDDSMEPTLKNGDVVIVDKKNNVLDRDGLYLLRTEGAA 162

Query: 181 -VAKVLISRRGRSIDLMSLNCCYPVDT-----VEMSDIEWIARILWA 221
              K +    G S+ L+  N  Y         +E  DI  + R++W+
Sbjct: 163 AFIKRVQRLPGGSLHLLCDNATYKPIEAKTAQIENGDIVIVGRVVWS 209


>gi|54296142|ref|YP_122511.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris]
 gi|53749927|emb|CAH11312.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris]
          Length = 227

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 17/225 (7%)

Query: 1   MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT     K+I + I    +   LT   L   AG L  T     ++       R P  E I
Sbjct: 1   MTELNIKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGV-----RTPGPEEI 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +  A + +   L+ L         K   ++  L            +G   +G+K    
Sbjct: 56  KSLARALDVSPAYLMCLSDELQFKEAKNPSQLIPLLDYRQACEASLHTGAESSGDKV--- 112

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRT 177
               I    +    + T     K  D SM+P  R  D+L++  ++    GD + +     
Sbjct: 113 ---FISVSTSLQPELSTDAFALKITDDSMMPEIRINDVLVIEPSVLPEPGDFVAVKINGK 169

Query: 178 GDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            + +              +L++LN  +P   V    +++ I  ++
Sbjct: 170 PETIICQYKKLSYTSSEFELLTLNDNWPNIKVSDDINVKIIGVLV 214


>gi|307708176|ref|ZP_07644643.1| transcriptional regulator [Streptococcus mitis NCTC 12261]
 gi|307615622|gb|EFN94828.1| transcriptional regulator [Streptococcus mitis NCTC 12261]
          Length = 228

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 58/218 (26%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69
           E +    +   LT   +A + G+   +++  +R   E  + +    E+I K+       I
Sbjct: 5   EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVFQLENILKVPKGYFTQI 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122
             +        +  EK       L                     +  +          +
Sbjct: 65  EIVRLYHSLSKQGQEKVVLYARNLSQEEQAHKVTAMPERLYEYRVYERMSAGIGASVYDD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 QNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           K +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 KRVYREENG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220


>gi|301348345|ref|ZP_07229086.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB056]
 gi|301597512|ref|ZP_07242520.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB059]
          Length = 267

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 66/248 (26%), Gaps = 31/248 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF- 59
           M   S   + E I    +   L+ S  A   GL P + +K K+  I         E +  
Sbjct: 20  MKVMS--TMVERIQEALKAKKLSWSKAATMIGLTPQAPSKWKKGQIGKETLDKLAELLEV 77

Query: 60  ---------KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS------GGFF 104
                    K    TN  + + +D      +     +                       
Sbjct: 78  DAGWLLNGKKKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDV 137

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGD 155
               F  G    ++            +                  K +  SM      GD
Sbjct: 138 VEASFSCGTG-ESIEFHFDVINGKQPFPPSFFKQKNVHPDCMRIIKAKGDSMADKIDDGD 196

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DI 212
           ++ ++ +       ++      G+ + K +    G  + L SLN  Y    V      + 
Sbjct: 197 LVGIDISQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNF 256

Query: 213 EWIARILW 220
           + + R  W
Sbjct: 257 KVMGRQFW 264


>gi|229815366|ref|ZP_04445701.1| hypothetical protein COLINT_02412 [Collinsella intestinalis DSM
           13280]
 gi|229809146|gb|EEP44913.1| hypothetical protein COLINT_02412 [Collinsella intestinalis DSM
           13280]
          Length = 220

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 26/219 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIE-GRNRWPSTESIFKI 61
            ++I++ I    +     PS   +A   GL  P++ +       E G  R          
Sbjct: 17  QQQIYDFIRSYQKEKGYPPSVREMAAAVGLSSPSTVHAHLSALEEHGLIRR--------- 67

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             AT     ++ +   S  +  E            P          +    N  ++  VP
Sbjct: 68  -DATKPRALEVFNSDGSSYKPEESTASSARGTVKLPLVGRVAAGMPILAEQNIEDSFTVP 126

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                     A  +     +    SM+      GD +I+        G+ ++     G  
Sbjct: 127 TEI-------ATDSSSFVLEVHGDSMINAGIFNGDYIIVREQKSAMNGEIVVAMID-GSA 178

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K     R   + L   N           +   + +++
Sbjct: 179 TVKTFYKER-GRVRLQPENDAMEPIY--ADNPTILGKVV 214


>gi|327478520|sp|P61612|LEXA_MYCPA RecName: Full=LexA repressor
          Length = 232

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 22/223 (9%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
            S + ++  I   I          PS   +    GL  TS    +   +E +        
Sbjct: 21  PSLTERQRTILNVIRSSVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERK------GY 74

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + +          + +D   +   T       +P   F P          +       + 
Sbjct: 75  LRRDPNRPRAVDVRGVDDDVAAPATEVAGSDALPEPTFVPVLGRIAAGGPILAEEAVEDV 134

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
             +P                   K    SM       GD +++      +  D +     
Sbjct: 135 FPLPRELVG-------DGTLFLLKVVGDSMVEAAICDGDWVVVRQQHVADNADIVAAMID 187

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K      G  + LM  N  +       +D   + +++
Sbjct: 188 -GEATVKTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 226


>gi|239917261|ref|YP_002956819.1| SOS-response transcriptional repressor, LexA [Micrococcus luteus
           NCTC 2665]
 gi|281414261|ref|ZP_06246003.1| SOS-response transcriptional repressor, LexA [Micrococcus luteus
           NCTC 2665]
 gi|239838468|gb|ACS30265.1| SOS-response transcriptional repressor, LexA [Micrococcus luteus
           NCTC 2665]
          Length = 238

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 57/223 (25%), Gaps = 17/223 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES- 57
            ++I + I      H   PS   +   AGL   S       + +R G     R P     
Sbjct: 18  QRRIVQTIRDAIADHGYPPSMREIGDAAGLASLSSVTHQLGRLERHGYI--RRDPGRPRA 75

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +L      + +      +                   + S      G    G     
Sbjct: 76  LEVLLDVDGTPLGEAASPAAAPSSQVSTIAAWHT--GTDEADSVPVPWVGRIAAGGPVLA 133

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               E           + +    +    SM+      GD +++        GD +     
Sbjct: 134 EQQVEDVMAIPRRLTGEGELFMLRVTGDSMVDAAICDGDWVVVRRQETAENGDIVAALLD 193

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K    R      L+  N  Y     + +    + R++
Sbjct: 194 -DEATVKTFRRR-DGHTWLLPQNTAYEPILGDHA--TVMGRVV 232


>gi|22537417|ref|NP_688268.1| repressor protein [Streptococcus agalactiae 2603V/R]
 gi|77406937|ref|ZP_00783958.1| repressor protein, putative [Streptococcus agalactiae H36B]
 gi|22534293|gb|AAN00141.1|AE014250_4 repressor protein, putative [Streptococcus agalactiae 2603V/R]
 gi|77174457|gb|EAO77305.1| repressor protein, putative [Streptococcus agalactiae H36B]
          Length = 230

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 63/224 (28%), Gaps = 20/224 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + +       + S LA K  ++ +S+   +      +    + + +  +L       
Sbjct: 4   GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKT--KPNQSNLKQLAILLDVPETYF 61

Query: 70  CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN- 116
                +  +  + + +             + +       P  +           G     
Sbjct: 62  ESEYKIVNTYLQLSLQNQEKVEKYAEELLQTQKVHEKIVPLFAVEVLSEIQLSAGPGEGL 121

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                         Y     D        SM P+Y+ G++ ++ S    + G  +     
Sbjct: 122 YDEFETETVYSEDEYT--GFDIATWISGNSMEPVYKDGEVALIRSTGFDHDG-AVYALNW 178

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G +  K L         ++S+N       +    +I  + +I+
Sbjct: 179 NGSLYIKKLYREEDG-FRMVSINPDVAERFIPFEDEIRIVGKIV 221


>gi|299531647|ref|ZP_07045052.1| putative phage repressor [Comamonas testosteroni S44]
 gi|298720363|gb|EFI61315.1| putative phage repressor [Comamonas testosteroni S44]
          Length = 208

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 29/210 (13%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL--------- 72
           ++   +AR AG+  ++  + K    +G  +   T    K+ AA+  +   +         
Sbjct: 1   MSVGEIARIAGVTSSAVTQWK----DGPTKSLKTAPATKLAAASGFSAMWIATGTGPEKG 56

Query: 73  -LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                  + + T    +  P++    +G          P G+ +  V   E  +      
Sbjct: 57  VHADFDENVKPTPPGMRAYPVISKIQAGLVKEIVCPYEP-GDGF-AVEFGEDDASDW--- 111

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR--- 188
                    + +  SMLP +R GD ++++  +    GD +  +    +   K    R   
Sbjct: 112 -----AFFFEIEGDSMLPEFRPGDRVLIDPEVSPRPGDFVAARNTRQEATFKKYRVRGID 166

Query: 189 --RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                  +L+ LN  YPV   +   +  I 
Sbjct: 167 EAGQEIFELVPLNDDYPVMRSDEHHLVVIG 196


>gi|262040838|ref|ZP_06014065.1| repressor protein cI [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041821|gb|EEW42865.1| repressor protein cI [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 327

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 83/228 (36%), Gaps = 29/228 (12%)

Query: 14  DRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           DR+  R     LT   LA++AG+   + +K++        +  ++ ++FKI +A      
Sbjct: 100 DRLISRRELLGLTQEALAKRAGVTRVAISKAELGLT----KNFNSNTLFKISSALGCEPE 155

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGS----------GGFFDSGVFPTGN----KWN 116
            L     +  +  +  +++ P+       +            +        G       N
Sbjct: 156 WLSTGKGTQEKLPKTPQQQKPVSDASWVNNVAETVQPQRRFSYPKLNWVQAGQFAQCGDN 215

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL 172
                     ++  YA + +    + +  SM       + +G  ++++   +      ++
Sbjct: 216 YNMYDIENWIYSVKYAGE-RGFWLEVKGDSMTSHTGITFPEGMSILIDPEKEPYPNCYVI 274

Query: 173 IKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            + R+  D+  K  ++  G    L  LN  YP+  ++  + E I  ++
Sbjct: 275 AQKRSSKDVTFKKYVTDMGSGY-LKPLNPQYPMIPLD-DECEIIGVVV 320


>gi|227358478|ref|ZP_03842804.1| LexA family repressor/S24 family protease [Proteus mirabilis ATCC
           29906]
 gi|227161280|gb|EEI46351.1| LexA family repressor/S24 family protease [Proteus mirabilis ATCC
           29906]
          Length = 227

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 66/216 (30%), Gaps = 20/216 (9%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
             + +   +T   LA +  +   +             R PS   I  ILA        + 
Sbjct: 20  KSLMKEKGITYDDLAERFSVSKGAVGHWMTG-----KREPSLHDIAGILAFVGVNNAVIN 74

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                     +   +     Y   +       S  F +  + + V      S        
Sbjct: 75  SDGSISIEKEDINHQPPIYQYPLFTKVQAGAFSTEFNSYTQKDAV------SWIPTAKKA 128

Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +    + +  SM       P + +G +++++   +V  GD  + +    +   K LI 
Sbjct: 129 SERAFWLEVEGQSMTAPPGGKPSFPEGMLILVDPEEEVEFGDFCVARLLNDEFTFKRLIR 188

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             G    L  LN  + +  +  +    I +++  SQ
Sbjct: 189 DGGIEY-LEPLNPRFDLIPINGN-CTIIGKVI-KSQ 221


>gi|148270783|ref|YP_001245243.1| SOS-response transcriptional repressor, LexA [Thermotoga petrophila
           RKU-1]
 gi|166224654|sp|A5IN94|LEXA_THEP1 RecName: Full=LexA repressor
 gi|147736327|gb|ABQ47667.1| SOS-response transcriptional repressor, LexA [Thermotoga petrophila
           RKU-1]
          Length = 197

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 38/224 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + ++  +   I+   E++   PS   +AR+  + P       R             
Sbjct: 1   MKDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                    +    +                    +    P                  +
Sbjct: 43  -------LLHLIALEKKGYIERKNGKPRALRVSKSIRNKIPLIGEIRAGEKREAVEYLED 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            + +PE                  K +  SM       GD++++        GD ++   
Sbjct: 96  YIEIPESFLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVVAMV 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K    +RG +++L   N        +   ++ + +++
Sbjct: 150 D-GEVTLKKFY-QRGDTVELRPANREMSSMFFKAEKVKILGKVV 191


>gi|54293108|ref|YP_125523.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens]
 gi|53752940|emb|CAH14376.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens]
          Length = 234

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 73/218 (33%), Gaps = 12/218 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+I + I    +   LT   L   AG L  T     ++       R P  E I  +  A 
Sbjct: 18  KEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGV-----RTPGPEEIKSLAEAL 72

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + +   L+ L         KK   +  L                          +  + +
Sbjct: 73  DVSPAYLMCLSDEAQVKVVKKTSHLIPLLDHHQACQARLHVNTIRVQGTCGDAALISVSA 132

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKV 184
                 + +      K  D SM+P  R GD+LI++ +I+   GD  ++  P   + +   
Sbjct: 133 ALLPELSDE--AFALKMTDESMMPEIRVGDVLIVDPSIEPAPGDFVVVKVPSISNAIVCK 190

Query: 185 LISR--RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
                      +L++ N  +P  TV    D E I  IL
Sbjct: 191 YRKLSYTSPEFELLTANDNWPNITVTADIDAEIIGSIL 228


>gi|24371557|ref|NP_720299.1| C2 [Enterobacteria phage ST64T]
 gi|24250784|gb|AAL15497.1| C2 [Salmonella phage ST64T]
          Length = 234

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 58/214 (27%), Gaps = 18/214 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               ++  LT   LA   G    +             R PS E I  I+         L 
Sbjct: 24  KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 78

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130
                D   +       P  +        F        GN    V    + EI       
Sbjct: 79  SDGMVDYPDSSLSNVSSPRPHTE---IRRFPLISWVSAGNWCEAVEPYQLREIEVWPETT 135

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
                +      +  SM         +G  ++++ AI+   G  ++       +   K  
Sbjct: 136 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKY 195

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I   G+   L  LN  Y +  +  +    I  ++
Sbjct: 196 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 227


>gi|319650122|ref|ZP_08004271.1| hypothetical protein HMPREF1013_00876 [Bacillus sp. 2_A_57_CT2]
 gi|317398303|gb|EFV78992.1| hypothetical protein HMPREF1013_00876 [Bacillus sp. 2_A_57_CT2]
          Length = 211

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 65/210 (30%), Gaps = 22/210 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN-ETI 69
           + I +  ++   T + LA+   L   + +            +P  + I  +      +  
Sbjct: 13  KNIKKNLKKMGKTQTDLAKDLNLPEMTVSNWVNAKT-----YPRVDKIQMMADYFGLQYR 67

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L +    +      +  ++P+L     G   +        G ++ +  +         
Sbjct: 68  SDLTEDKPDNIYPATSELVKVPILGNIACGEPIYVAENF--VGYRYESADMLPS------ 119

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISR 188
                 +    + +  SM P    G ++++    +V  G+   ++     +   K +  +
Sbjct: 120 -----GKTYYLEAKGNSMEPTIPNGSLVLIREQSEVENGEIAAVLVNGDTEATLKRVKKQ 174

Query: 189 RGRSIDLMSLNCCYPVDTVEMS-DIEWIAR 217
               + LM  N  Y    V  S     I +
Sbjct: 175 -NGVVILMPDNPNYEPIVVSKSYPARIIGK 203


>gi|281413089|ref|YP_003347168.1| transcriptional repressor, LexA family [Thermotoga naphthophila
           RKU-10]
 gi|281374192|gb|ADA67754.1| transcriptional repressor, LexA family [Thermotoga naphthophila
           RKU-10]
          Length = 197

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 38/224 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + ++  +   I+   E++   PS   +AR+  + P       R             
Sbjct: 1   MKDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                    +    +                    +    P                  +
Sbjct: 43  -------LLHLIALEKKGYIERKNGKPRALRVSKSIRNKIPLIGEIRAGEKREAIEYLED 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            + +PE                  K +  SM       GD++++        GD ++   
Sbjct: 96  YIEIPESFLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVVAMV 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K    +RG +++L   N        +   ++ + +++
Sbjct: 150 D-GEVTLKKFY-QRGDTVELRPANREMSSMFFKAEKVKILGKVV 191


>gi|226306263|ref|YP_002766223.1| LexA repressor [Rhodococcus erythropolis PR4]
 gi|226185380|dbj|BAH33484.1| LexA repressor [Rhodococcus erythropolis PR4]
          Length = 242

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ E I          PS   +    GL  TS   ++ +    +G  R          
Sbjct: 29  QRRVLEVIRDSVTERGYPPSIREIGDAVGLTSTSSVAHQLRTLERKGFLRRDPNRPRAVD 88

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +   +E          S           +P   F P          +       +   +P
Sbjct: 89  VRGLDEVAADTAIASVSKHSGEYNSADPLPEPAFVPILGRIAAGGPILAEEAVEDVFPLP 148

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       Q      K    SM+      GD +++        GD +      G+ 
Sbjct: 149 RELVG-------QGSLFMLKVVGESMIDAAICDGDWVVVRQQNVAENGDIVAAMID-GEA 200

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K       + + LM  N  +       ++   + +++
Sbjct: 201 TVKTFKR-TKKEVWLMPHNELFEPI--PGNNAVILGKVV 236


>gi|225174630|ref|ZP_03728628.1| SOS-response transcriptional repressor, LexA [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169757|gb|EEG78553.1| SOS-response transcriptional repressor, LexA [Dethiobacter
           alkaliphilus AHT 1]
          Length = 204

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 32/224 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I + I R  +  N  PS   + +  GL  +S   +               
Sbjct: 1   MDDLTPRQMQILDYIRREVKAKNYPPSVREIGQAVGLSSSSTVHAH-------------- 46

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K+  +              +    +     +P +   P          +    N   
Sbjct: 47  -LAKL-ESKGYIRRDPTKPRALELIDDDPSPTVVPDVVSAPVVGHVTAGEPILAEQNIEE 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +P++          Q      + +  SM+      GD++I+      + G+ ++   
Sbjct: 105 YFPLPKMMVH-------QDNVFLLRVRGDSMINAGIMDGDLVIVRQQSTASNGEIIV-AM 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   K     +   I L   N  Y         I  I +++
Sbjct: 157 LEGEATVKRFYKEKD-HIRLQPENDLYEPLRSPH--ISIIGKVI 197


>gi|222100461|ref|YP_002535029.1| LexA repressor [Thermotoga neapolitana DSM 4359]
 gi|254809108|sp|B9K9N0|LEXA_THENN RecName: Full=LexA repressor
 gi|221572851|gb|ACM23663.1| LexA repressor [Thermotoga neapolitana DSM 4359]
          Length = 207

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 38/224 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + K+  +   I+   E++   PS   +AR+  + P       R             
Sbjct: 1   MKDLTAKQRSVLIFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                    +    +                    +    P                  +
Sbjct: 43  -------QLHLVALEKKGYIERKNGKPRAMRVTKSVKNRVPLIGEIRAGEKKEAIEYLED 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            + VP              +    + +  SM       GD++++        GD +    
Sbjct: 96  YIEVPGSFLSSGY------EHFLLRVKGESMIEEHICDGDLVLIRRQDWAQNGDIV-AAM 148

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K    +RG  ++L   N            ++ + +++
Sbjct: 149 VEGEVTLKKFF-QRGEMVELRPANKEMSPMFFRADRVKILGKVV 191


>gi|322617498|gb|EFY14397.1| hypothetical protein SEEM971_01424 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322659292|gb|EFY55539.1| hypothetical protein SEEM19N_01238 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665752|gb|EFY61935.1| hypothetical protein SEEM801_09901 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670010|gb|EFY66151.1| hypothetical protein SEEM507_14680 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673997|gb|EFY70094.1| hypothetical protein SEEM877_09059 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|323193639|gb|EFZ78844.1| hypothetical protein SEEM581_01330 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323203568|gb|EFZ88591.1| hypothetical protein SEEM460_02152 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323214059|gb|EFZ98823.1| hypothetical protein SEEM6152_13764 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218424|gb|EGA03134.1| hypothetical protein SEEM0077_16041 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219751|gb|EGA04232.1| hypothetical protein SEEM0047_08474 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323232418|gb|EGA16521.1| hypothetical protein SEEM0052_09866 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323250152|gb|EGA34046.1| hypothetical protein SEEM9199_06791 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253937|gb|EGA37762.1| hypothetical protein SEEM8282_07229 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323262865|gb|EGA46416.1| hypothetical protein SEEM8284_09304 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264240|gb|EGA47747.1| hypothetical protein SEEM8285_16873 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268725|gb|EGA52188.1| hypothetical protein SEEM8287_12411 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 220

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 58/214 (27%), Gaps = 18/214 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               ++  LT   LA   G    +             R PS E I  I+         L 
Sbjct: 10  KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130
                D   +       P  +        F        GN    +    + EI       
Sbjct: 65  SDGMVDYPDSNLNNVSSPRPHTE---IRRFPLISWVSAGNWCEAIEPYQLREIEVWPETT 121

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
                +      +  SM         +G  ++++ AI+   G  ++       +   K  
Sbjct: 122 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKY 181

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I   G+   L  LN  Y +  +  +    I  ++
Sbjct: 182 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 213


>gi|227549109|ref|ZP_03979158.1| LexA repressor [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078806|gb|EEI16769.1| LexA repressor [Corynebacterium lipophiloflavum DSM 44291]
          Length = 229

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 24/227 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53
           M+  S   ++I E I          PS   +   AGL  TS    +   +E +    R P
Sbjct: 13  MSVLSDRQRRILEVIQDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELERKGFLRRDP 72

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +      +                          ++     + P        S +    N
Sbjct: 73  NKPRAVDLRHLP-----DSQKSSRKTKPKAAPTPEDASQPRYVPVVGQIAAGSPILAEEN 127

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             N   +P+             +    +    SM       GD +++ S      G+ + 
Sbjct: 128 VDNYFPLPQELLG-------DGELYMLRVVGESMRDAGILDGDWVVVRSQPVAEEGEFVA 180

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K         + L+  N  +     +  + E + R++
Sbjct: 181 ALLD-GEATVKEFHKDTTG-VWLLPHNDAFSPI--KGDEAEIMGRVV 223


>gi|218885456|ref|YP_002434777.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756410|gb|ACL07309.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 261

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 40/237 (16%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA------------------ 64
           T   LAR  G++ ++  ++K      +        ++ +                     
Sbjct: 20  TQQALARVLGVNRSAITQAKNRDAIPQKWILRLSRVYGLAPDWLEYGRGTPRPAPLAQPL 79

Query: 65  ----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT--------- 111
                                      +   L    P+   G     V            
Sbjct: 80  AAAVHGAGNIPTQSATSHFNPAGSVPGRAATLRPAMPAPHHGDLPPAVHMVPKVRARLSA 139

Query: 112 -GNKWNTVGVPEIRSPHNGIYAI----QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            G  +    +P    P    +       +          SM P  R GD ++++ A +  
Sbjct: 140 GGGSFEVQAMPVGGQPFAHAWLARKGTPSAMVLMDVVGDSMEPEIRDGDTVLVDRATEDL 199

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILW 220
              ++        ++ K ++      + L+S N  Y    V   ++E    I R++W
Sbjct: 200 RFGQVYAVGLEDAVLVKRVMRTPDG-LALVSDNPAYSPIRVRGDELEQFRVIGRVVW 255


>gi|146277319|ref|YP_001167478.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025]
 gi|145555560|gb|ABP70173.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025]
          Length = 263

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 19/226 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ +   +D +       P  +A K+G+    F    R   + R   P  E+  +I  A 
Sbjct: 41  HEIVQSRLDEL----GENPFSMAAKSGVSYDKFRNVLR--NDARRADPKVETAREICNAL 94

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                       +     +    +   +            +    T +    +       
Sbjct: 95  GLEFYIGAPRDTAPVHRVDLDGTDFAPIPVHRVELAAGCGAEN-HTEDLVGHLAFRRSWL 153

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDR---------LLIKP 175
              G+ A  +     +    SM P    GD+L+++ +  +   G R         +    
Sbjct: 154 QRIGVSA--SSAVLARAAGDSMAPTIHDGDMLLIDRSRAEAPRGPRGPKDTRPAPIFAIL 211

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
             G    K +    G ++ L+S N  +  +  ++  +  I R++W 
Sbjct: 212 DDGLARVKRIELVPGGTLALLSDNPVFGPEFRQIGSVSIIGRVMWW 257


>gi|291541906|emb|CBL15016.1| SOS-response transcriptional repressor, LexA [Ruminococcus bromii
           L2-63]
          Length = 196

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 46/191 (24%), Gaps = 13/191 (6%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
                    +    G  R PS   + +I   T  +    +              +E  + 
Sbjct: 7   SQQKIFDYLKECA-GEGRVPS---VREICEETGLSSTSTVHHHLKALEEKGLISREHGVN 62

Query: 94  YFPPSGSGGFFDSGVF----PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
                                 G     V   E   P         +    + Q  SM+ 
Sbjct: 63  RCIQINGMEKNTDVPVLGRVAAGYPILAVENIECYVPVPDSLKRGRELFALRVQGESMIN 122

Query: 150 L-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                 DILI++       G+ ++      +   K           L   N  +    V 
Sbjct: 123 AGIFPDDILIVHRTPVAENGEIVVAL-VGDEATVKRFYK-ENGHFRLQPENDNFEPIIV- 179

Query: 209 MSDIEWIARIL 219
             ++  + +++
Sbjct: 180 -DEVALLGKVI 189


>gi|254975526|ref|ZP_05271998.1| SOS regulatory protein [Clostridium difficile QCD-66c26]
 gi|255092914|ref|ZP_05322392.1| SOS regulatory protein [Clostridium difficile CIP 107932]
 gi|255314655|ref|ZP_05356238.1| SOS regulatory protein [Clostridium difficile QCD-76w55]
 gi|255517329|ref|ZP_05385005.1| SOS regulatory protein [Clostridium difficile QCD-97b34]
 gi|255650435|ref|ZP_05397337.1| SOS regulatory protein [Clostridium difficile QCD-37x79]
 gi|306520412|ref|ZP_07406759.1| SOS regulatory protein [Clostridium difficile QCD-32g58]
          Length = 211

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 53/221 (23%), Gaps = 26/221 (11%)

Query: 3   SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             + K+  I E I          P+   +    GL  TS   S                +
Sbjct: 4   DLTEKQVLILEFIKSQITLKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 51

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K+     +             +  +       ++  P           +    N    +
Sbjct: 52  EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 110

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P             + +   + +  SM+       D ++++          ++     
Sbjct: 111 PFPASLVKG-------SNNFVLRVKGESMINAGILDEDYVVVDKKNTALNSQIVVALING 163

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                K      G  I L   N       +  S++E +  +
Sbjct: 164 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 203


>gi|77919337|ref|YP_357152.1| LexA repressor [Pelobacter carbinolicus DSM 2380]
 gi|123729446|sp|Q3A3S5|LEXA_PELCD RecName: Full=LexA repressor
 gi|77545420|gb|ABA88982.1| SOS-response transcriptional repressor, LexA [Pelobacter
           carbinolicus DSM 2380]
          Length = 202

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 57/225 (25%), Gaps = 38/225 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M+  +   K++++ I R         +   +AR  G                   + S  
Sbjct: 1   MSPLTPKQKQVFDYIARHIGEQGFAPSQQEIARAFG-------------------FRSLG 41

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++   L           +             +    L            +G    G    
Sbjct: 42  TVRNYLVRLEREGLLERNW----------NARRGLQLRTASERGMKLPLAGTVAAGKPIE 91

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKP 175
            + +P++            +    +    SM+      GD +++        G  ++   
Sbjct: 92  AIEIPDVI-EVPPTMVGSGEHFVLRVAGDSMIGDGIIDGDYVVVRKQATAEHGQTVVALL 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              +   K L  R    I+L   N       V +  +      ++
Sbjct: 151 D-NEATVKRLHRR-NDRIELHPANPSMQPIVVTDPDNFRIEGVVV 193


>gi|331265721|ref|YP_004325351.1| transcriptional regulator, putative [Streptococcus oralis Uo5]
 gi|326682393|emb|CBZ00010.1| transcriptional regulator, putative [Streptococcus oralis Uo5]
          Length = 228

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69
           E +    +   LT   +A   G+   +++  +R   E  + +    E+I K+       I
Sbjct: 5   EKLKARRKELKLTQKEIAEGLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYFTQI 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122
             +        +  +K       L                     +  +          +
Sbjct: 65  EIVRLYNSLSKQGKDKVVLYARNLAQEEQTQKVTTMPERLYEYRVYERMSAGIGASVYDD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 QNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           K +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220


>gi|259416048|ref|ZP_05739968.1| prophage transcriptional regulator [Silicibacter sp. TrichCH4B]
 gi|259347487|gb|EEW59264.1| prophage transcriptional regulator [Silicibacter sp. TrichCH4B]
          Length = 217

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 54/199 (27%), Gaps = 5/199 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  +    ++     +   G+   +             R   +E +  +      +
Sbjct: 3   IPDRIRELMSSKSMNIKEFSETTGVKYRTIQNYLSGE-----RAVGSEFLAAVSERMGVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              +L    S     E  +                         ++         R    
Sbjct: 58  ASWILTGQGSMMFPNECIDVAQADFVQVARYEVEASAGNGSEVASEDAAQSYAFNRKWLG 117

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                    +    +  SM P    GD+++++ A       ++     +G++  K +   
Sbjct: 118 KRGLKPDTLSVISVRGDSMEPDLNDGDLVLIDLANTDLSDGKIYAVQYSGNLFVKRIQYV 177

Query: 189 RGRSIDLMSLNCCYPVDTV 207
            G +I L+S N  Y    +
Sbjct: 178 PGDTIRLVSRNAQYAPIEI 196


>gi|76798009|ref|ZP_00780267.1| phage repressor protein [Streptococcus agalactiae 18RS21]
 gi|76586632|gb|EAO63132.1| phage repressor protein [Streptococcus agalactiae 18RS21]
 gi|323127145|gb|ADX24442.1| repressor protein, putative [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 230

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 62/224 (27%), Gaps = 20/224 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + +       + S LA K  ++ +S+   +      +    + + +  +L       
Sbjct: 4   GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKT--KPNQSNLKQLAILLDVPETYF 61

Query: 70  CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN- 116
                +  +  + + +             + +       P  +           G     
Sbjct: 62  ESEYKIVNTYLQLSLQNQEKVEKYAEELLQTQKVHEKIVPLFAVEVLSEIQLSAGPGEGL 121

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                         Y     D        SM P+Y+ G++ ++ S      G  +     
Sbjct: 122 YDEFETETVYSEDEYT--GFDIATWISGNSMEPVYKDGEVALIRSTGFDYDG-AVYALNW 178

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G +  K L         ++S+N       +    +I  + +I+
Sbjct: 179 NGSLYIKKLYREEDG-FRMVSINPDVAERFIPFEDEIRIVGKIV 221


>gi|218289525|ref|ZP_03493753.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240393|gb|EED07575.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 223

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 62/206 (30%), Gaps = 4/206 (1%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +  + + ++ +  NLT + LA  +G+     ++ +     GR +  + + +   L    E
Sbjct: 3   QFGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQR-GRPKPDTLKKLASALKVPYE 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSP 126
            +     +       T +     P+              G    G     + +       
Sbjct: 62  DLLLHAGVLNEQISRTSESRDLKPVDPSWYKRQVPIPVLGSIRAGTPVEMLALNSSEFVL 121

Query: 127 HNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            +       +    +    SM+      GD++I+      +  D  ++     +   K +
Sbjct: 122 VDSDLLGNHEGFALEVVGDSMIGDYIFPGDLVIVKYTSNFSPQDICVVAINGEEATLKRV 181

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD 211
             +    I L   N        + +D
Sbjct: 182 KCQGDICI-LSPSNPAMEPMVYKATD 206


>gi|213158017|ref|YP_002320068.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB0057]
 gi|213057177|gb|ACJ42079.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB0057]
          Length = 248

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 66/248 (26%), Gaps = 31/248 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF- 59
           M   S   + E I    +   L+ S  A   GL P + +K K+  I         E +  
Sbjct: 1   MKVMS--TMVERIQEALKAKKLSWSKAATMIGLTPQAPSKWKKGQIGKETLDKLAELLEV 58

Query: 60  ---------KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS------GGFF 104
                    K    TN  + + +D      +     +                       
Sbjct: 59  DAGWLLNGKKKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDV 118

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGD 155
               F  G    ++            +                  K +  SM      GD
Sbjct: 119 VEASFSCGTG-ESIEFHFDVINGKQPFPPSFFKQKNVHPDCMRIIKAKGDSMADKIDDGD 177

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DI 212
           ++ ++ +       ++      G+ + K +    G  + L SLN  Y    V      + 
Sbjct: 178 LVGIDISQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNF 237

Query: 213 EWIARILW 220
           + + R  W
Sbjct: 238 KVMGRQFW 245


>gi|325453355|gb|ADZ13636.1| putative transcriptional regulator [Cronobacter phage ENT47670]
          Length = 229

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 77/229 (33%), Gaps = 20/229 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E I ++ + + +T S LA +   D  + ++ +R          S   I KI  A   
Sbjct: 2   KIGEKIRQIRKANQMTLSELALRVESDVGNLSRLERGMQGY-----SDTLIQKIAEALGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---------WNTV 118
            + +L     +   T +       +                   G+            ++
Sbjct: 57  PVAELFSSNEAS-DTVDTYSVGSIIKKGRNDVYRIDVLDVSASAGDGAASKDVVEVIRSI 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                ++        ++       +  SM      GD++ ++  + V  GD + +    G
Sbjct: 116 EYVPDQARVIFGNRPESSVKLINVRGDSMEGTIEPGDLIFVDVGVSVFDGDGIYVFSFNG 175

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWA-SQ 223
           D+  K L   + + I  +S N  Y   T+   ++       R++ + SQ
Sbjct: 176 DMFVKRLQKVKSQLIV-ISDNPRYREWTISEEEMHMFHVAGRVMLSQSQ 223


>gi|318075428|ref|ZP_07982760.1| LexA repressor [Streptomyces sp. SA3_actF]
 gi|333024024|ref|ZP_08452088.1| putative LexA repressor [Streptomyces sp. Tu6071]
 gi|332743876|gb|EGJ74317.1| putative LexA repressor [Streptomyces sp. Tu6071]
          Length = 182

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 43/198 (21%), Gaps = 26/198 (13%)

Query: 25  SGLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             + +  GL  TS   ++      +G  R                               
Sbjct: 2   REIGQAVGLSSTSSVAHQLMALERKGFLR------------RDPHRPRAYEVRGSDQPSP 49

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
                   P   + P          +    +  +   +P              +    K 
Sbjct: 50  QPADTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPLPRQLVG-------DGELFVLKV 102

Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              SM       GD + +        GD +      G+   K         + L+  N  
Sbjct: 103 VGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GEATVKRFKR-EDGHVWLLPHNAA 160

Query: 202 YPVDTVEMSDIEWIARIL 219
           Y        +   + +++
Sbjct: 161 YQPI--PGDEATILGKVV 176


>gi|255252724|ref|YP_003090259.1| cI major repressor protein [Salmonella phage c341]
 gi|223697697|gb|ACN18321.1| cI major repressor protein [Salmonella phage g341c]
          Length = 224

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 69/229 (30%), Gaps = 23/229 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    +    + ID++     L    +A   G+   + +           R PS + I  
Sbjct: 6   MKMNWYDIAKQRIDQL----GLNQDKVAEHLGVTKGAVSHWLNG-----RRNPSIQEIGA 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I      T   +           E  E++     F              P    +     
Sbjct: 57  IFQYLGVT--DVRFNADGTFSVGESTEQKPVKPQFEYPFFSHVQAGMFTPEFRTFTERDA 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174
               S               + +  SM       P + +G +++++  + V+ GD  + +
Sbjct: 115 ECWISTTKKA---SDSSFWLEVEGHSMTAPAGSRPSFPEGMLILVDPEVPVDPGDFCIAR 171

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
               +   K LI   G+   L  LN  +P+          + +++ ASQ
Sbjct: 172 LCGDEFTFKKLIKDSGQVF-LQPLNPQFPIMPCN-EQCRVVGKVV-ASQ 217


>gi|255006786|ref|ZP_05145387.2| repressor-like protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
          Length = 238

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 66/237 (27%), Gaps = 33/237 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN-------------------- 50
           + + ++     ++ S L+R+ G+   S +       E +                     
Sbjct: 6   DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNVNEAWLMGF 65

Query: 51  -----RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                R      I  I +       + +    ++    +  + +  +            +
Sbjct: 66  DISKNRKIENNDIASIYSKLTPPRQKNVLNYANEQLDEQNTKGDNIVDINSYKQDRIAVN 125

Query: 106 SG-VFPTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
                  G       +         + A I   D   K    SM P+++ G+I+ +    
Sbjct: 126 VNGCVSAGVGE---RLHGETLFTEMVKAPIPPHDLALKVNGDSMEPMFKDGEIIFVEKTH 182

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            +  G   +      +   K +       + L+SLN  Y          +  + +++
Sbjct: 183 NIKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKEYRDLHFYRNESVRLVGKVI 237


>gi|15924988|ref|NP_372522.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156980315|ref|YP_001442574.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|282919844|ref|ZP_06327576.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427]
 gi|14247771|dbj|BAB58160.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722450|dbj|BAF78867.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu3]
 gi|282316482|gb|EFB46859.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427]
          Length = 242

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 66/237 (27%), Gaps = 33/237 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN-------------------- 50
           + + ++     ++ S L+R+ G+   S +       E +                     
Sbjct: 10  DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNVNEAWLMGF 69

Query: 51  -----RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                R      I  I +       + +    ++    +  + +  +            +
Sbjct: 70  DISKNRKIENNDIASIYSKLTPPRQKNVLNYANEQLDEQNTKGDNIVDINSYKQDRIAVN 129

Query: 106 SG-VFPTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
                  G       +         + A I   D   K    SM P+++ G+I+ +    
Sbjct: 130 VNGCVSAGVGE---RLHGETLFTEMVKAPIPPHDLALKVNGDSMEPMFKDGEIIFVEKTH 186

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            +  G   +      +   K +       + L+SLN  Y          +  + +++
Sbjct: 187 NIKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKEYRDLHFYRNESVRLVGKVI 241


>gi|224369285|ref|YP_002603449.1| putative transcriptional regulator [Desulfobacterium autotrophicum
           HRM2]
 gi|223692002|gb|ACN15285.1| putative transcriptional regulator [Desulfobacterium autotrophicum
           HRM2]
          Length = 216

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 62/213 (29%), Gaps = 14/213 (6%)

Query: 13  IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I R+ E   + + + LA   G++ +    ++R      +RW     I K+          
Sbjct: 9   IARILEVTGIRSQTELADALGINRSGITHARRKNEIP-DRW-----IVKLYRKFGLNPVW 62

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           +           E  +                         +  + +          G  
Sbjct: 63  IETGAGRVFLNVETSQDIEFKTIPKVKARLSAGSGSFETLSDVTDYLSFQSRWLTRKGS- 121

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
                    +    SM P  R GD ++++ +        +        I+ K +      
Sbjct: 122 --ANAMVAMEVFGNSMEPELRAGDTVLIDQSQTEILAGAIYALGIEDTILVKRIEKHPN- 178

Query: 192 SIDLMSLNCCYPVDTVEMSDIE---WIARILWA 221
            + L S N  Y    + + ++E    I +++W+
Sbjct: 179 KLVLTSENRDYQPIFLSLDEVEKVRIIGKVVWS 211


>gi|296445564|ref|ZP_06887520.1| putative phage repressor [Methylosinus trichosporium OB3b]
 gi|296256969|gb|EFH04040.1| putative phage repressor [Methylosinus trichosporium OB3b]
          Length = 230

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 15/219 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + +  E    +   L R++G+  +++++  +   E      S E + +I      +
Sbjct: 15  LARRLAQAVELAGGSARVL-RESGVKASTYSRYIKEQSEA-----SAEKLGRIAEVAGVS 68

Query: 69  ICQLLDLPF----SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           +  L+                      +   P S                   +  P   
Sbjct: 69  LDWLVLDRGAPVFEQEGEPPPLPAGPDMAMIPHSHVRPRVAEPADSRSALVEKLPFPRAL 128

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
               G+ A   +    +    SM P    G +++++   +   GD + +    G+   + 
Sbjct: 129 LRRLGLGA--GEVEFVRAVGDSMEPTIDDGALVLIDRTRKEIAGDAIYLVTLDGEARLER 186

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILW 220
           +      SI L+S N  Y  + V   D+E      R  W
Sbjct: 187 VRRNIDGSILLISDNRRYDPEHVRRQDVERLAVHGRACW 225


>gi|295397998|ref|ZP_06808054.1| repressor LexA [Aerococcus viridans ATCC 11563]
 gi|294973756|gb|EFG49527.1| repressor LexA [Aerococcus viridans ATCC 11563]
          Length = 203

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 57/224 (25%), Gaps = 43/224 (19%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR--NRWPSTE 56
           H +I + I    +     P+   +     L  TS      ++ ++ G   R   +  + E
Sbjct: 5   HLQILKCIYSNIQSQGFPPTVREICEAVNLSSTSTVHGHLSQLEKQGYLLRNATKPRAME 64

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K L     +   +  +                                        +
Sbjct: 65  ITDKGLELLGVSSQGIPMIGTVTAGQPIT------------------------AVEEIED 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
              +P      +            K +  SM       GD +I+        GD ++   
Sbjct: 101 YFPIPPTLKNQSDSL------FMLKIRGDSMIEAGILDGDFVIVRQESSAKNGDIVIAMT 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   K         I L   N       +   D++ + R++
Sbjct: 155 DEGEATCKRFFK-EDGYIRLQPENHSLEPIILP--DVQILGRVI 195


>gi|283476394|emb|CAY54130.1| LexA repressor protein [Lactobacillus helveticus CNRZ32]
          Length = 208

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 29/221 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           +     +I   I    +     P+   +     L  TS        +E +       +  
Sbjct: 6   SDTKQLEILRYIYDTVDHRGFPPTVREICAAVKLSSTSTVHGHLARLERKGLLIKDATKP 65

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + L  T+E   +L             K K IP++    +G             +      
Sbjct: 66  RALEITDEGKKELGI-----------KPKRIPVVGVVAAGHPI------LAVQDIDEYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P              +    K    SM+      GD +I+      N G+ ++      
Sbjct: 109 LPPDLKNDA------GELFMLKIHGESMINAGILNGDNVIVKKQNTANNGEIVVAMTDEN 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K     +     L   N       +   ++  + +++
Sbjct: 163 EATVKRFYKEKD-HYRLQPENDTMAPIILP--EVTILGKVV 200


>gi|133873996|gb|ABO40689.1| prophage repressor [Enterobacteria phage HK542]
          Length = 237

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L    +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLPQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  ESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             + KIL       +     ++ ++  +       + +    ++          +   F 
Sbjct: 66  --LAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFT 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G+    V   +  S       ++       T      P +  G +++++    V  GD 
Sbjct: 124 KGDAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDF 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 181 CIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 230


>gi|294650866|ref|ZP_06728213.1| LexA family repressor [Acinetobacter haemolyticus ATCC 19194]
 gi|292823284|gb|EFF82140.1| LexA family repressor [Acinetobacter haemolyticus ATCC 19194]
          Length = 224

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 27/226 (11%)

Query: 1   MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   S H++I + +D      NL  + LAR       S  K            P+ E++ 
Sbjct: 1   MFVMSLHERIKQKLD----EKNLKAADLARATKRSAVSAKKWLDGVSV-----PTAENLK 51

Query: 60  KILAATNETICQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
            I      T                    +            +G F +            
Sbjct: 52  TIAKFLGVTDDWLLYGGKEQQTIDNNVSNKPARLAPVLSWVQAGTFTNVQAVDMSQVDEW 111

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRLLIK 174
           + +P+                  K Q  S  P + +GD ++++       +  GD ++++
Sbjct: 112 LPLPDECI----------NCFYLKVQGISNQPDFLEGDYILVDPDVYYSDMQSGDMIVVR 161

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            +  D   K L+     S  + +LN  +  + + + +   ++ +++
Sbjct: 162 -KFEDATFKKLVIETDGSRYMQALNPNFQPNIIPLDEHCHFVGQVV 206


>gi|15675391|ref|NP_269565.1| putative repressor [Streptococcus phage 370.2]
 gi|19746441|ref|NP_607577.1| repressor [Streptococcus pyogenes MGAS8232]
 gi|21910679|ref|NP_664947.1| putative cI-like repressor - phage associated [Streptococcus
           pyogenes MGAS315]
 gi|28876313|ref|NP_795491.1| putative cI-like repressor [Streptococcus pyogenes phage 315.3]
 gi|28895631|ref|NP_801981.1| repressor (phage associated) [Streptococcus pyogenes SSI-1]
 gi|13622576|gb|AAK34286.1| putative repressor - phage associated [Streptococcus phage 370.2]
 gi|19748643|gb|AAL98076.1| putative repressor [Streptococcus pyogenes MGAS8232]
 gi|21904881|gb|AAM79750.1| putative cI-like repressor - phage-associated [Streptococcus
           pyogenes phage 315.3]
 gi|28810880|dbj|BAC63814.1| putative repressor (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 251

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 37/247 (14%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++ + I ++ E  N+T + L+   G+   T+ +K ++     + +    + + +I   T
Sbjct: 2   EQLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKD--LKKLAEIFNVT 59

Query: 66  -----------------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                                 +++ +     +  ++K                      
Sbjct: 60  SDYLLGLTDSKLGKITIQNEQPEIVSIYNQLEQPRQEKVLNFANEQLEEQNKTVSIFDKK 119

Query: 109 FPTGNKWNTVGVPEIRSPHNGIY---------------AIQTQDTRHKTQDTSMLPLYRK 153
                 + T  V  + +   G Y                    DT  K    SM PL + 
Sbjct: 120 SEETEDYITDYVEGLVAAGLGAYQEDNLHMKVKLRSDDVPDEYDTIAKVAGDSMEPLIQD 179

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDI 212
            D+L +  + QV+  D  +     G    K L      +  L SLN  Y    +    DI
Sbjct: 180 NDLLFIKVSSQVDMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNKSYEEIYLSKDDDI 238

Query: 213 EWIARIL 219
             I  ++
Sbjct: 239 RTIGEVV 245


>gi|322375904|ref|ZP_08050415.1| putative repressor protein [Streptococcus sp. C300]
 gi|321279172|gb|EFX56214.1| putative repressor protein [Streptococcus sp. C300]
          Length = 228

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 58/218 (26%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69
           E +    +   LT   +A + G+   +++  +R   E  + +    E+I K+       I
Sbjct: 5   EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYFTQI 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122
             +        +  +K       L                     +  +          +
Sbjct: 65  EIVRLYNSLSKQGKDKVVLYARNLAQEEQTQKVATMPERLYEYRVYERMSAGIGASVYDD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 RNFDTVYFNEELAHDFASWVAGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           K +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220


>gi|313889078|ref|ZP_07822736.1| repressor LexA [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844951|gb|EFR32354.1| repressor LexA [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 219

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 12/211 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +  +  +T   L++  G+  T+               P  + I KI    N +  
Sbjct: 13  KNLKELLSKKGVTQLELSKYLGVSNTTVYNYVNGFN-----MPRMDKIDKICEFFNISRS 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L++    +         +   +    +        G    G         E        
Sbjct: 68  ALIESNEPNSMQYTLDISQFENIIPIKNSKTHIPLIGTIAAGRPILADEHIEEYIDLKQK 127

Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 D   + +  SM+    R GDI+ +     V+ G+   +         K +    
Sbjct: 128 I---NADFALRVKGDSMINANIRDGDIVFIRKQSDVDDGEIAAVLID-DSATLKRVFKI- 182

Query: 190 GRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           G  + L + N  Y    ++ S ++  + + +
Sbjct: 183 GDIVQLRAENSNYAPINLDESNNVLILGKAV 213


>gi|313114406|ref|ZP_07799934.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623277|gb|EFQ06704.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 205

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 72/224 (32%), Gaps = 30/224 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M+  S       +    +   L+   LA++ G    +S  K ++   +          + 
Sbjct: 1   MSELS-----TRLHLRRKELGLSQEELAQRMGYRSKSSITKLEKGIND-----LPQSKVE 50

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++ AA   T   LL L         +    +  +    S + G   +      N    +G
Sbjct: 51  ELAAALETTPAYLLGLDTPCPPPGFEPLPAMTQVPLIGSIACGTPIT---AEQNIERYIG 107

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           VP               D        SM P    GDI+ +    +V  G+   ++   G+
Sbjct: 108 VPAAWRA----------DFALTCHGDSMSPTICDGDIVCIRCQPEVEQGEIAAVRI-GGE 156

Query: 180 IVAKVLISRRGRSIDLMSLNCCY-PVDTV---EMSDIEWIARIL 219
              K    + G ++ L++ N    P       ++ ++    R +
Sbjct: 157 ATLKHFHRQ-GDAVMLLADNAAVCPPMIFTGLQLEELHIEGRAV 199


>gi|151221463|ref|YP_001332285.1| LexA repressor [Staphylococcus aureus subsp. aureus str. Newman]
 gi|172048876|sp|A6QGP1|LEXA_STAAE RecName: Full=LexA repressor
 gi|150374263|dbj|BAF67523.1| DNA damage-inducible LexA repressor [Staphylococcus aureus subsp.
           aureus str. Newman]
          Length = 207

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 54/225 (24%), Gaps = 30/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGRNRWPST 55
           M   +    +I+  I ++ +     PS   +    GL  + + +                
Sbjct: 1   MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSFTVHGH-------------- 46

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
             + ++                            +      P          +    N  
Sbjct: 47  --LSRLEEKGYIEGDPTKPRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPITAVENIE 104

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
               +PE  +  +      +          SM       GD +I+ S      GD ++  
Sbjct: 105 EYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAM 159

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K     +     L   N       ++   +  I +++
Sbjct: 160 TEEDEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VAVIGKVI 201


>gi|225390515|ref|ZP_03760239.1| hypothetical protein CLOSTASPAR_04270 [Clostridium asparagiforme
           DSM 15981]
 gi|225043420|gb|EEG53666.1| hypothetical protein CLOSTASPAR_04270 [Clostridium asparagiforme
           DSM 15981]
          Length = 222

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 51/224 (22%), Gaps = 41/224 (18%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTE 56
              ++++ +           T   +    GL  TS      N  +R G   R    P T 
Sbjct: 25  KQSEVYDYVKAAMREKGYCPTVREICLAVGLTSTSSVHAHLNTLERRGYIRRNPLKPRTI 84

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + +                            +   L   P          +    N  +
Sbjct: 85  ELVE------------------------SAAIQERDLLRIPIVGTVAAGMPLLADQNIDD 120

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            V  P                   + +  SM+      GD +I+        GD ++   
Sbjct: 121 YVSFPAGALHRG----CGGSVFMLRVKGDSMINAGIYHGDKIIVEQCDTAENGDIVVAL- 175

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  K           L   N       V    +E   +++
Sbjct: 176 VEDSATVKRFFK-ENGHYRLQPENDAMQPIIV--DQVEIQGKVI 216


>gi|307243866|ref|ZP_07525991.1| repressor LexA [Peptostreptococcus stomatis DSM 17678]
 gi|306492688|gb|EFM64716.1| repressor LexA [Peptostreptococcus stomatis DSM 17678]
          Length = 211

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 37/226 (16%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPS 54
            + K+  +   +    +     PS   + +   +  TS      N+ ++     +   PS
Sbjct: 5   LTEKELSVLNFLKYHIKDKGYPPSVREICKNLDIKSTSTVFGILNRLEKNKYIRK--DPS 62

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                +IL   N +     D    +           P+                    N 
Sbjct: 63  KTRAIEILGNDNGSNNYNFDPEIINLPLVGSIAAGSPI----------------LAQENI 106

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ-VNCGDRLL 172
            + +G+P         Y         K +  SM+ +     D +I+++A    + G  ++
Sbjct: 107 EDYIGLPS-------AYIKGKDCFMLKIKGDSMVEVGIMDKDYIIVDAADTRADNGKIVV 159

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                     K L  +    I L+  N  Y     E   ++ +  +
Sbjct: 160 ALINGESATVKTLEKK-DGKIWLIPQNSAYEPMIFEPDQVKVMGTV 204


>gi|327409424|ref|YP_004301566.1| gp32 [Brochothrix phage BL3]
 gi|296245500|gb|ADH03113.1| gp32 [Brochothrix phage BL3]
          Length = 228

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 61/224 (27%), Gaps = 18/224 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +        LT   +  K G+  ++  K +   IE   R      + K L  +   I  +
Sbjct: 5   LKERRLEKKLTLEEVGEKVGVGKSTVRKWENGMIENMGRD-KIVLLSKALDISPLEILGI 63

Query: 73  LDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            D                  + K             S                T   P  
Sbjct: 64  EDELAPSSIETIYNQLNEQRQTKVYNYASRQLEEQNSNVTSIDKNKKVYVLGKTAANPTE 123

Query: 124 RSPHNGIY-------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            S  + +Y         +  D     Q  SM PL   G I+      +V  G+  ++   
Sbjct: 124 VSYGDAVYDETIDTNVPRNADCALVIQGDSMEPLLHDGSIVFYKQQPEVENGEIAIVDID 183

Query: 177 TGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +  K +        + L SLN  Y    +    +  I +++
Sbjct: 184 GNGVTCKKVYFNYDDNIVLLKSLNEKYDDRELSPERVRIIGKVV 227


>gi|168765271|ref|ZP_02790278.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
 gi|168798579|ref|ZP_02823586.1| repressor protein CI [Escherichia coli O157:H7 str. EC508]
 gi|217327029|ref|ZP_03443112.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588]
 gi|189364926|gb|EDU83342.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
 gi|189378869|gb|EDU97285.1| repressor protein CI [Escherichia coli O157:H7 str. EC508]
 gi|217319396|gb|EEC27821.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588]
 gi|315274298|gb|ADU03706.1| repressor protein CI [Enterobacteria phage VT2phi_272]
 gi|326340128|gb|EGD63932.1| repressor protein CI [Escherichia coli O157:H7 str. 1125]
          Length = 237

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 75/234 (32%), Gaps = 21/234 (8%)

Query: 2   TSFSHKKIWEAIDRMA-------ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
              + +++ +A  R+        +   L+   LA + G+  ++ N+             +
Sbjct: 6   KPLTPEQLEDA-KRLKSIFNAKKKELGLSQESLAYELGVTQSAVNQLMAGINAINASHAA 64

Query: 55  TESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
              + KIL       +      + ++  +      +       L           D   +
Sbjct: 65  --QLAKILNVKVGDFSPSLAKSIAEMALAIEEPLTRVPAYEYPLLSCVQAGAFSMDDISY 122

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
              +    +      S  +    ++              P + +G +++++   ++  GD
Sbjct: 123 TAKDAIKWISTTTKASDRSFWLEVKGHSMTAPQGGK---PSFPEGMLILVDPEREIEDGD 179

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             + +    +   K  I   G++  L  LN  + +      + +++ +++  SQ
Sbjct: 180 FCVARMNGDEFTFKRFIRESGKAY-LEPLNPRFDMIECN-ENCQFVGKVI-KSQ 230


>gi|212709629|ref|ZP_03317757.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM
           30120]
 gi|212687733|gb|EEB47261.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM
           30120]
          Length = 236

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 18/221 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++    +   +   L+   L    G+  ++  +             + E+  K+  A   
Sbjct: 16  RLKAIFEAKKKELGLSQESLGDAIGMGQSAVAQLLNGVN-----AINVENAVKLAEALEV 70

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIR 124
           ++     L   + R       E  ++         +        G            +  
Sbjct: 71  SVDDFSPLLAKEIRRMFNSVSEQKIV--SNGDRYMYPLLTKVQAGTFTENSNSYTEKDAY 128

Query: 125 SPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +               + +  SM       P + +G +++++    VN GD  + K    
Sbjct: 129 AWIPTAKKASDSAFWLEVEGHSMTAPQGGRPSFPEGMLILIDPKEPVNVGDFCIAKLNGN 188

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K LI   G++  L  LN  + +  +   + E I +++
Sbjct: 189 EFTFKKLIRESGQTF-LEPLNPKFDLIPIN-ENCEIIGKVI 227


>gi|312143584|ref|YP_003995030.1| transcriptional repressor, LexA family [Halanaerobium sp.
           'sapolanicus']
 gi|311904235|gb|ADQ14676.1| transcriptional repressor, LexA family [Halanaerobium sp.
           'sapolanicus']
          Length = 208

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53
           M   S   K I   I    +     PS   + +  GL  P S +   +   + +   R P
Sbjct: 1   MEELSKRQKSILNFIMDEIKTKGYPPSVREIGKAVGLKSPASVHSHLKTLEKLKYLRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           S     +++                       + K    +   P        + +    N
Sbjct: 61  SKPRAIEVIYN------------------KNDENKSNKEMIEIPLVGKVTAGAPILAEEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +   +P                   +    SM+      GD +I            ++
Sbjct: 103 IEDYFPLPLGYIKVGN-----NDVFMLRVSGDSMINAGIHDGDYVIAEKQSYAENAQIVI 157

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         I L   N  Y        D++ + +++
Sbjct: 158 ALI-EDEATVKRFYKDNNN-IRLQPENPAYEPII--SKDVKVLGKVI 200


>gi|317058133|ref|ZP_07922618.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313683809|gb|EFS20644.1| predicted protein [Fusobacterium sp. 3_1_5R]
          Length = 345

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 9/210 (4%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +      +N   + L +K        N                +S  K    +     +
Sbjct: 103 YLKNFMSENNYDITFLCKKIKTSEILLNNYLSGIET--PNNDFIDSFIKTFKISRIEA-E 159

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
            +          +       + +                 G  ++   +P          
Sbjct: 160 HIKAYIDYDNNFKDPSTISNIDFELSYELIEVPVYSSVSAGYGYSPESLPIKYVSIPK-- 217

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR--TGDIVAKVLISRR 189
            I       +    SM      GDI+I+   ++VN GD  +       GD V K L  + 
Sbjct: 218 -IDGDIIGIRVSGDSMEKTIYDGDIVIVKKDVEVNIGDIGVFLLNKEFGDGVVKRLAKK- 275

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                L S N  Y    ++ S++    +++
Sbjct: 276 NGVFVLESDNPYYKPIEIKSSEVITCGKVI 305



 Score = 40.5 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          S    +I   + ++ E  NLT   L+ KA +   +    +        R  + E + K L
Sbjct: 2  SLMEIRIL--LKKLRESRNLTIKELSEKAKVGNGTIGDIESGRNT--PRKTTLEKLAKAL 57

Query: 63 A 63
           
Sbjct: 58 N 58


>gi|257451561|ref|ZP_05616860.1| transcriptional regulator, XRE family protein [Fusobacterium sp.
           3_1_5R]
          Length = 342

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 9/210 (4%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +      +N   + L +K        N                +S  K    +     +
Sbjct: 100 YLKNFMSENNYDITFLCKKIKTSEILLNNYLSGIET--PNNDFIDSFIKTFKISRIEA-E 156

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
            +          +       + +                 G  ++   +P          
Sbjct: 157 HIKAYIDYDNNFKDPSTISNIDFELSYELIEVPVYSSVSAGYGYSPESLPIKYVSIPK-- 214

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR--TGDIVAKVLISRR 189
            I       +    SM      GDI+I+   ++VN GD  +       GD V K L  + 
Sbjct: 215 -IDGDIIGIRVSGDSMEKTIYDGDIVIVKKDVEVNIGDIGVFLLNKEFGDGVVKRLAKK- 272

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                L S N  Y    ++ S++    +++
Sbjct: 273 NGVFVLESDNPYYKPIEIKSSEVITCGKVI 302



 Score = 40.1 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +I   + ++ E  NLT   L+ KA +   +    +        R  + E + K L 
Sbjct: 2  EIRILLKKLRESRNLTIKELSEKAKVGNGTIGDIESGRNT--PRKTTLEKLAKALN 55


>gi|41408934|ref|NP_961770.1| LexA repressor [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397293|gb|AAS05153.1| LexA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 217

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 22/223 (9%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
            S + ++  I   I          PS   +    GL  TS    +   +E +        
Sbjct: 6   PSLTERQRTILNVIRSSVTSRGYPPSIREIGDAVGLTSTSSVAHQLRTLERK------GY 59

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + +          + +D   +   T       +P   F P          +       + 
Sbjct: 60  LRRDPNRPRAVDVRGVDDDVAAPATEVAGSDALPEPTFVPVLGRIAAGGPILAEEAVEDV 119

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
             +P                   K    SM       GD +++      +  D +     
Sbjct: 120 FPLPRELVG-------DGTLFLLKVVGDSMVEAAICDGDWVVVRQQHVADNADIVAAMID 172

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K      G  + LM  N  +       +D   + +++
Sbjct: 173 -GEATVKTFKR-AGGQVWLMPHNPAFDPI--PGNDATVLGKVV 211


>gi|116670029|ref|YP_830962.1| LexA repressor [Arthrobacter sp. FB24]
 gi|116610138|gb|ABK02862.1| SOS-response transcriptional repressor, LexA [Arthrobacter sp.
           FB24]
          Length = 288

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 55/220 (25%), Gaps = 10/220 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL---DPTSFNKSKRFGIEGRNRWPSTESIFK 60
            KKI E I R    +   PS   +    GL      +   S+   +    R P      +
Sbjct: 67  QKKILETIQRSVNDNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRPRAME 126

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L                                   + +      G    G       V
Sbjct: 127 VLMPLTLDEGTAKISGVEKPARLRTIGGLAVSELATATDTAMVPLVGRIAAGGPILADQV 186

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E   P         +    K    SM+      GD +++        GD +       +
Sbjct: 187 VEDVMPLPRQLVGHGELFMLKVTGDSMIDAAICDGDWVVVRRQSDAVNGDIVAALLD-DE 245

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +R     L+  N  Y     + +    + +++
Sbjct: 246 ATVKTF-RQRDGHTWLLPQNTQYEPILGDHA--NIMGKVV 282


>gi|154252141|ref|YP_001412965.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
 gi|154156091|gb|ABS63308.1| putative phage repressor [Parvibaculum lavamentivorans DS-1]
          Length = 239

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 73/232 (31%), Gaps = 20/232 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---WPSTESIFKILAAT 65
           +   +  + +   L+   +AR+ G+  T++   +              S E        T
Sbjct: 3   VATRLGHIRKFLGLSQKDMARRFGVSGTTWQNYELENAAPNAHVLGRLSGEGFNINWVLT 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG---VFPTGNKW-----NT 117
                +  +    +  T   + + + L     S              P            
Sbjct: 63  GMGEMRAGERKMMEKPTGFAELEPLELEGIAASRKHVLIPRYALRTLPREGGEAAMTMEE 122

Query: 118 VGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           V + +  +           A        +  D SM P +  GDIL+ +++     G  + 
Sbjct: 123 VSLLDTIAFRRDFIESDLKADPASLIAIEAADNSMSPTFGPGDILLADTSEPRLRGSGIY 182

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVE---MSDIEWIARILW 220
           +    G ++ K L  +      + S N   YP + +E   +  ++ + R++W
Sbjct: 183 VFASGGALLVKRLQVKLDGGFIVSSDNAELYPAEEIERTALERVKIVGRVIW 234


>gi|91787695|ref|YP_548647.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24
           [Polaromonas sp. JS666]
 gi|91696920|gb|ABE43749.1| phage repressor protein, Serine peptidase, MEROPS family S24
           [Polaromonas sp. JS666]
          Length = 207

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 62/209 (29%), Gaps = 19/209 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I        L+    A  AG+   +  + ++         P   +  K+      ++ +L
Sbjct: 7   IREKRRLLGLSVQQFADAAGVSRGAVQQWEKPDGTA----PKRANQPKVAELLGISVAEL 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           +              +    L                P  + +  V V            
Sbjct: 63  VSGDSRMSPGLGIDVRAEIPLISEVHAGNYTAIDNFQP-RSGFEMVPVTVP--------- 112

Query: 133 IQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           ++ Q    +    SM+      + +G IL++   +    GD +++         K L+  
Sbjct: 113 VKRQTFALRVHGDSMVGITGDSFPEGSILVVEPELTAEPGDYVIVLNSKNQTTFKQLVKD 172

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
                 L  LN  YPV  +  ++I  + R
Sbjct: 173 GAD-YYLKPLNTRYPVKPLGSAEIIGVVR 200


>gi|146310442|ref|YP_001175516.1| putative phage repressor [Enterobacter sp. 638]
 gi|145317318|gb|ABP59465.1| putative phage repressor [Enterobacter sp. 638]
          Length = 240

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 11/220 (5%)

Query: 11  EAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +    ++  L      + +A++  L P + +K          R    + +  I+  ++
Sbjct: 17  QRLALACDKAGLPAHGRQAEIAKRMKLTPKAVSKWFNGEAI--PRRGKLQELAAIIGTSS 74

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +                K+    +  F    S G              ++      + 
Sbjct: 75  SHLLGDSAADGISEGHLLVKDDSYRVDIFDIQASAGQGVIVRDEFIETIKSIEYSTEEAR 134

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                              SM   +   D + ++ +I    GD + I     D+  K L 
Sbjct: 135 AVFGGRPADHIKMIAVNGDSMSGTFEPRDQIFVDVSIDCFDGDGIYIFVLENDLYIKRLQ 194

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWASQ 223
            +  R + ++S N  Y    +E  D   +   A++L  SQ
Sbjct: 195 KQH-RKLAVISDNKKYETWYIEDGDFSSLRICAKVL-VSQ 232


>gi|307711376|ref|ZP_07647794.1| peptidase S24-like family protein [Streptococcus mitis SK321]
 gi|307616794|gb|EFN95976.1| peptidase S24-like family protein [Streptococcus mitis SK321]
          Length = 228

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 59/218 (27%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69
           E +    +   LT   +A + G+   +++  +R   E  + +    E+I K+       I
Sbjct: 5   EKLKARRKELKLTQREIAEQLGISFQAYSAWERGVKEPSKEKVVQLENILKVPKGYFTQI 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122
             +        +  EK       L               F     +  +          +
Sbjct: 65  EIVRLYHSLSKQGQEKVVLYARNLSQEEQAQKVTAMPERFYEYRVYERMSAGIGASVYDD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 QNFDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           K +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 KRVYREENG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220


>gi|262202154|ref|YP_003273362.1| LexA repressor [Gordonia bronchialis DSM 43247]
 gi|262085501|gb|ACY21469.1| LexA repressor [Gordonia bronchialis DSM 43247]
          Length = 233

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 52/214 (24%), Gaps = 28/214 (13%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + I +        PS   +    GL  TS    +   +E +                 
Sbjct: 39  VLDVIRKSVRERGYPPSIREIGDAVGLTSTSSVAHQLRTLERK--------------GLL 84

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           +                    + +P   F P          +       +   +P     
Sbjct: 85  KRDHNRPRAVNVQESEPAPSAENLPTPTFVPVLGRIAAGGPILAEEAVEDVFPLPRELVG 144

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                         +    SM+      GD +++      + GD +      G+   K  
Sbjct: 145 -------DGSLFLLRVVGESMIDAAICDGDWVVVRQQNVADNGDIVAAMID-GEATVKTF 196

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +    I LM  N  +        D   + +++
Sbjct: 197 KRK-DGHIWLMPHNEHFQPI--PGDDAAILGKVV 227


>gi|315611793|ref|ZP_07886715.1| hypothetical transcriptional regulator [Streptococcus sanguinis
           ATCC 49296]
 gi|315316208|gb|EFU64238.1| hypothetical transcriptional regulator [Streptococcus sanguinis
           ATCC 49296]
          Length = 228

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 58/218 (26%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69
           E +    +   LT   +A + G+   +++  +R   E  + +    E+I K+       I
Sbjct: 5   EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLENILKVARGYFTQI 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122
             +        +  +K       L                     +  +          +
Sbjct: 65  EIVRLYNSLSKQGKDKVVLYARNLAQEEQTQKVATMPERLYEYRVYERMSAGNGASVYDD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 QNFDTVYFNEELAHDFASWVAGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           K +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220


>gi|156935235|ref|YP_001439151.1| hypothetical protein ESA_03086 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533489|gb|ABU78315.1| hypothetical protein ESA_03086 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 61/214 (28%), Gaps = 18/214 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               ++  LT   LA   G    +             R PS E I  I+         L 
Sbjct: 10  KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130
                D  + +      P  +        F        GN    V    + E+       
Sbjct: 65  SDGMVDYPSDDLANVSNPRPHTEV---RRFPLISWVSAGNWCEAVEPYQLQEVEVWPETT 121

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVL 185
                +      +  SM         +G  ++++ AI+   G  ++ K     +   K  
Sbjct: 122 SHASERSFWLTVRGDSMTAPSGLSIPEGMQILVDPAIEATSGRLVVAKLDSENEATFKKY 181

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I   G+   L  LN  Y +  ++ +    I  ++
Sbjct: 182 IVDAGQKY-LKPLNPSYHMIPIDGN-CRIIGVVI 213


>gi|87200717|ref|YP_497974.1| putative phage repressor [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136398|gb|ABD27140.1| putative phage repressor [Novosphingobium aromaticivorans DSM
           12444]
          Length = 269

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 13/219 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I++ ++ +     L    LA+  G++    +K +    + +      E +         
Sbjct: 55  QIFQRLEAL----GLKQRELAQALGIEENKISKVRAGERQFK----GAELLAAYEWLDQR 106

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                +          ++     P+               + P       V    +    
Sbjct: 107 EAEAHMPRLSRVAAVGQQVIPATPVEGEVVQIQKLDLSLSMGPGTLIDGYVESELVSFDL 166

Query: 128 NGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVA 182
             +     A             SM P  + GD++++++  + ++  D +      G    
Sbjct: 167 GFVRLFTRAASDHLRLVTGIGDSMEPTLKWGDLILIDTTDRMLSKQDGIYWINLYGAAGI 226

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           K L +   R+I + S N       VE  D+    R +WA
Sbjct: 227 KRLRAIGPRTILVKSDNPGVDDQEVEAEDLRIEGRAIWA 265


>gi|212702484|ref|ZP_03310612.1| hypothetical protein DESPIG_00501 [Desulfovibrio piger ATCC 29098]
 gi|212674145|gb|EEB34628.1| hypothetical protein DESPIG_00501 [Desulfovibrio piger ATCC 29098]
          Length = 233

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 1   MT-SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           MT S S   I + + +  E    T   LAR  GL        ++   +G       E + 
Sbjct: 1   MTDSRSDPTIVQRLMQALEAD--TAVELARALGLP---VTDVEQALAKG---QVPDEWVR 52

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-----SGVFPTGNK 114
              A T      L            +       L                       G+ 
Sbjct: 53  ICAAETGCNADWLFFGRGPMRLPLVESGAMPACLMLEDVDDDVDMITVPLVVARLSAGSG 112

Query: 115 WNTV--GVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
              V        +  +     +         +    SM+P  +  D+++L+         
Sbjct: 113 SLEVSNEQEGGYAFRSDFLHRKGNPRRMVLMRVSGDSMVPEIQDNDLVLLDQGQTEIVSG 172

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221
           RL        I  K +    G+ I L S N  YP  T++           I R+LW+
Sbjct: 173 RLYAIGFEDAIYIKRIDLLPGQ-IVLHSTNPAYPPVTLDLSGDCAEQFRVIGRVLWS 228


>gi|304395821|ref|ZP_07377703.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304356190|gb|EFM20555.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 232

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 21/218 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    +  NLT   LA KAG++  +    ++   +     P+  ++  +  A     
Sbjct: 20  GERIRLKRKELNLTQQALAEKAGVNRVTVTGWEKDDYQ-----PNGANLQALADALKCDP 74

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L+        +   +  ++     P               G   +             
Sbjct: 75  TWLVSGKGESISSPLLRPVQVSAKEVPLISWVQAGTWTATDPGLTRDE-----AIMWLYT 129

Query: 130 IYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQ---VNCGDRLLIKPRTG-DI 180
             ++  +    + +  SM      P   +  I+I+   I       G  ++     G + 
Sbjct: 130 TASVSDKAFALRVRGDSMTNPHGNPTIPEDSIVIVEPEIHDVAAINGKIVVAHIDGGSEA 189

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K  +        L+ LN  Y     + +    +  +
Sbjct: 190 TLKKFVEDFPHRY-LVPLNPNYKTIECDGN-CRIVGVV 225


>gi|302185497|ref|ZP_07262170.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           642]
          Length = 243

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K                         +      ++     + G   + +         
Sbjct: 65  GPKHPNDCANENTGGDTRVIIHQARNVSRGDVEIQIFMEAESTHGVGKTVLAEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P     + GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231


>gi|297571235|ref|YP_003697009.1| transcriptional repressor, LexA family [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931582|gb|ADH92390.1| transcriptional repressor, LexA family [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 262

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 10/217 (4%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESIFKILA 63
           I + +  +       P+   +    GL   S  K +   +      +  P      ++  
Sbjct: 44  IVDTVRSLLASRGYPPTVREIGDSVGLKSPSSVKHQLDSLIQLGIFSHDPRRSRTLEVTP 103

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  +  +   S    +          + P + +      G    G         E 
Sbjct: 104 LGMSLDTETGEYTRSSILHSLPSSASESSEFAPATATVSVPLVGRIAAGAPILADQHIED 163

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                       +    +    SM+      GD +++        G+ +      G+   
Sbjct: 164 VFALPRQLTGSGELFMLQVSGDSMVDAAICDGDWVVVRRQPNAEQGEIVAAMID-GEATV 222

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           KVL         L+  N  Y        + + I RI+
Sbjct: 223 KVLSR-TDGHQWLLPRNPDYSPI--PADNAQIIGRIV 256


>gi|146306618|ref|YP_001187083.1| LexA repressor [Pseudomonas mendocina ymp]
 gi|166224641|sp|A4XSN5|LEXA_PSEMY RecName: Full=LexA repressor
 gi|145574819|gb|ABP84351.1| SOS-response transcriptional repressor, LexA [Pseudomonas mendocina
           ymp]
          Length = 204

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 32/216 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G                     + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSP---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  +         +   G    G    G    
Sbjct: 46  HLKALARK----------GAIEMTPGASRGIRIPGFEPGAANEDEGLPVIGRVAAGAPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   + +  SM  +    GD+L +++  +   G  ++ + 
Sbjct: 96  AQQHVEESCQINPAFFHPKADYLLRVRGMSMKDIGIFDGDLLAVHTTREARNGQIVVARL 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++  
Sbjct: 156 D-DEVTVKRFKR-EGNKVWLIAENPEFAPIEVDLEQ 189


>gi|237704871|ref|ZP_04535352.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226901237|gb|EEH87496.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|315288265|gb|EFU47664.1| peptidase S24-like domain protein [Escherichia coli MS 110-3]
          Length = 228

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 7/195 (3%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            S LAR+   +P+  ++      +   +  + + +  I  + N     +  L        
Sbjct: 23  ASELARRIEREPSYVSRMLYPEGKSGKKRIADDMMELIEKSFNLPRGWMDMLADG----- 77

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
             K      L F  +   GF             +V + E RS    IY+        K +
Sbjct: 78  --KAGATDHLEFAGNVRAGFVPVIGEAVLGVDGSVDMIEFRSGWLSIYSGDKDAYGLKVK 135

Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
             SM P  + G+ +++     V+ GD + ++ + G  + K++   R       S+N  + 
Sbjct: 136 GDSMWPRIQSGEYVVIEPNTPVHPGDEVFVRTKDGHNMIKIMNKTRDGDYQFSSINSDHR 195

Query: 204 VDTVEMSDIEWIARI 218
             T+ + +++ +  +
Sbjct: 196 PITLPVEEVDKMHFV 210


>gi|49474223|ref|YP_032265.1| LexA repressor [Bartonella quintana str. Toulouse]
 gi|71658809|sp|Q6FZU5|LEXA_BARQU RecName: Full=LexA repressor
 gi|49239727|emb|CAF26107.1| SOS response regulator lexA protein [Bartonella quintana str.
           Toulouse]
          Length = 237

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 62/232 (26%), Gaps = 14/232 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PST 55
           M +    ++   I    +   + PS    K  L+ TS +   R       R      P+ 
Sbjct: 1   MLTCKQYELLLFIHNHMKEIGVPPSFDEMKIALELTSKSGIHRLITALEERGFIRRLPNR 60

Query: 56  ESI-------FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                      KI    +       ++  ++ R   K  K +         +      G 
Sbjct: 61  ARAVEVVRLPEKITFNLSSARKISPNVIENNRRKISKNSKNLNNFDIEDKKNVTVPIMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G   + +                 +    + +D SM        D +I+        
Sbjct: 121 IAAGVPVSAIQQQTNTLCLPADMISLGEHYALEVKDDSMIEAGILDKDTIIVRRQNTATP 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++      +   K        SI L + N  Y         IE   +++
Sbjct: 181 GEIIIALIDKEEATLKRYRRNGA-SIALEAANPHYETRIYRPERIEIQGKLI 231


>gi|323519078|gb|ADX93459.1| hypothetical protein ABTW07_3036 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 219

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 71/220 (32%), Gaps = 14/220 (6%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  + +      +R NL+  GL     +  ++  + +          PS + I       
Sbjct: 2   HNFVSDRFKSERKRLNLSQEGLGNLIEVSESTVKRWENGASI-----PSDKLILCAQHGF 56

Query: 66  NETICQ-LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           + T             ++ +    E  L+            +  F      + +   +  
Sbjct: 57  DITYVLLGDKNVEETSKSDDLFCGEFALVNVYDVAVSAGDGAVCFGAAEPVSRLAFRKDW 116

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
              +G+YA          +  SM P     + L++N++ +      + +     +   K 
Sbjct: 117 LSRHGLYA--KDLAIVYAKGDSMEPTIHDKEPLLVNTSDKELTDGFIYVVRNQENFWVKR 174

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221
           +  +    + L+S N  Y    ++++   D+E I R  W 
Sbjct: 175 VQRQFNE-LLLLSDNEKYLPMKLDLNEATDVEIIGR--WI 211


>gi|306836296|ref|ZP_07469277.1| repressor LexA [Corynebacterium accolens ATCC 49726]
 gi|304567816|gb|EFM43400.1| repressor LexA [Corynebacterium accolens ATCC 49726]
          Length = 236

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 54/219 (24%), Gaps = 13/219 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            ++I   I          PS   +   AGL  TS    + K+   +G  R    +     
Sbjct: 20  QRRILNVISDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 79

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +   N    +      +                       G         G         
Sbjct: 80  VRHLNTDNAEKKPGRKTKDVPDTSARGPEESAAVAYIPVVG-----RIAAGAPITAEENI 134

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +   P         +    +    SM       GD +I+ S      G+ +       + 
Sbjct: 135 DTYFPMPDEVVGGGELYMLQVVGDSMQDAGILNGDWVIIRSQSVAEEGEFVAALLDGSEA 194

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  YP       D E + +++
Sbjct: 195 TVKEFHRDSSG-VWLLPHNDAYPPI--NGDDAEIMGKVV 230


>gi|82777173|ref|YP_403522.1| repressor protein CI [Shigella dysenteriae Sd197]
 gi|309788320|ref|ZP_07682924.1| repressor protein CI [Shigella dysenteriae 1617]
 gi|81241321|gb|ABB62031.1| repressor protein CI [Shigella dysenteriae Sd197]
 gi|308923702|gb|EFP69205.1| repressor protein CI [Shigella dysenteriae 1617]
          Length = 237

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 75/234 (32%), Gaps = 21/234 (8%)

Query: 2   TSFSHKKIWEAIDRMA-------ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
              + +++ +A  R+        +   L+   LA + G+  ++ ++             +
Sbjct: 6   KPLTPEQLEDA-KRLKSIFNAKKKELGLSQESLAYELGVTQSAVSQLMAGINAINASHAA 64

Query: 55  TESIFKIL-----AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
              + KIL       +      + ++  +      +       L           D   +
Sbjct: 65  --QLAKILNVKVGDFSPSLAKSIAEMALAIEEPLTRVPAYEYPLLSCVQAGAFSMDDISY 122

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
              +    +      S  +    ++              P + +G +++++   ++  GD
Sbjct: 123 TAKDAIKWISTTTKASDRSFWLEVKGHSMTAPQGGK---PSFPEGMLILVDPEREIEDGD 179

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             + +    +   K  I   G++  L  LN  + +      + +++ +++  SQ
Sbjct: 180 FCVARMNGDEFTFKRFIRESGKAY-LEPLNPRFDMIECN-ENCQFVGKVI-KSQ 230


>gi|242373636|ref|ZP_04819210.1| LexA repressor [Staphylococcus epidermidis M23864:W1]
 gi|242348604|gb|EES40206.1| LexA repressor [Staphylococcus epidermidis M23864:W1]
          Length = 206

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 56/225 (24%), Gaps = 31/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +    +I++ I  + +     PS   +    GL   ++ +                
Sbjct: 1   MRELTKRQSEIYDYIKHIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L                +  + +  E  +      P          +    N  
Sbjct: 50  ------LEEKGYIRRDPTKPRAIEIVSEQLDEVNVEETIHVPVIGKVTAGMPITAVENIE 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
               +PE  +  +      +          SM       GD +I+ S      GD ++  
Sbjct: 104 EYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAM 158

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K     +     L   N       ++   +  I +++
Sbjct: 159 TEDEEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VIVIGKVI 200


>gi|51892874|ref|YP_075565.1| LexA repressor [Symbiobacterium thermophilum IAM 14863]
 gi|71658817|sp|Q67NM2|LEXA_SYMTH RecName: Full=LexA repressor
 gi|51856563|dbj|BAD40721.1| transcriptional repressor of the SOS regulon [Symbiobacterium
           thermophilum IAM 14863]
          Length = 205

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 36/220 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIFK 60
            ++I + I          PS   +    GL  +S       R   +G   R P+     +
Sbjct: 9   QRQILQFIKDEIRTKGYPPSVREIGEAIGLSSSSTVHGHMTRLEEKGYIRRDPTKPRAIE 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L  ++                      ++      P          +    +  +   +
Sbjct: 69  VLDGSH---------------------TQLKRTIAVPVVGRVTAGQPILAQESIEDHFPL 107

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P          A +++      Q  SM       GD ++++     N GD ++      +
Sbjct: 108 PADFVR-----ADESELFFLTVQGDSMIEAGILDGDYVLVHRQQHANNGDIVVALI-EDE 161

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +   I L   N       V   D + + +++
Sbjct: 162 ATVKRFFKEQD-HIRLQPENRFMDPIIVP--DCQILGKVV 198


>gi|1469215|emb|CAA63999.1| c2 [Enterobacteria phage L]
          Length = 220

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 58/214 (27%), Gaps = 18/214 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               ++  LT   LA   G    +             R PS E I  I+         L 
Sbjct: 10  KARMKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLS 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGI 130
                D   +       P  +        F        GN    V    + EI       
Sbjct: 65  SDGMVDYPDSSLSNVSSPRPHTE---IRRFPLISWVSAGNWCEAVEPYQLREIEVWPETT 121

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
                +      +  SM         +G  ++++ AI+   G  ++       +   K  
Sbjct: 122 AHASERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKY 181

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I   G+   L  LN  Y +  +  +    I  ++
Sbjct: 182 IVDAGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 213


>gi|187779612|ref|ZP_02996085.1| hypothetical protein CLOSPO_03208 [Clostridium sporogenes ATCC
           15579]
 gi|187773237|gb|EDU37039.1| hypothetical protein CLOSPO_03208 [Clostridium sporogenes ATCC
           15579]
          Length = 201

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 56/220 (25%), Gaps = 37/220 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFK 60
              +++  I    +     PS   + +  GL  TS      KR   EG  +  S+++   
Sbjct: 8   KQNEVYNFIKLQIKEKGYPPSVREICKAVGLSSTSSVHFHLKRLEKEGLIKRDSSKTRA- 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                                           +   P        + +    N  +   +
Sbjct: 67  ---------------------IEIVDPTSKKEVINVPIVGTITAGNPILAIENIEDVFPL 105

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P     +             K    SM       GD+ I+      N GD ++      +
Sbjct: 106 PIDYVKNT------KDLFMLKVSGESMIEAGILDGDLAIIEKTDSANNGDIVVALID-NE 158

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I L   N       +   D + + R++
Sbjct: 159 ATLKRFFKES-SYIRLQPENKSMKPIIL--EDCKVLGRLV 195


>gi|228951623|ref|ZP_04113727.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808084|gb|EEM54599.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 241

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 10/222 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT    + I + I +  + +++T S LA + G+  ++ +    +  +     PS+  + K
Sbjct: 15  MTDLQKQTIVKNIKKFLKENDMTQSDLASQIGIARSTLSDYMNYRAK-----PSSGVLEK 69

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL-YFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +      T   +     +        E ++                 G    G     V 
Sbjct: 70  MATVFGVTKSDIDTTYKNSKVEIVDGELQLVQEKPTDNESKKEIPIIGKIAAGVPLEAVQ 129

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
               R           +         SM  +   G   +L     V  G+   +      
Sbjct: 130 DIVDRIAPPYKTHNIDELFGLVVNGESMNKIVPNGHYAVLKKQPDVQNGEIAAVIVNGHY 189

Query: 180 IVAKVLISRRGRSI-DLMSLNCCYPVDTVEMS---DIEWIAR 217
              K +       I +  S +  +           DI+ I +
Sbjct: 190 ATLKKVYKFTDLMILEPCSHDESFKDQQYSQDNCEDIKIIGK 231


>gi|146278165|ref|YP_001168324.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025]
 gi|145556406|gb|ABP71019.1| putative phage repressor [Rhodobacter sphaeroides ATCC 17025]
          Length = 231

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 19/226 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ +   +D +       P  +A K+G+    F    R   + R   P  E+  +I  A 
Sbjct: 9   HEIVQSRLDEL----GENPFSMAAKSGVSYDKFRNVLR--NDARRADPKVETAREICNAL 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                       +     +    +   +            +    T +    +       
Sbjct: 63  GLEFYIGAPRDTAPVHRVDLDGTDFAPIPVHRVELAAGCGAEN-HTEDLVGHLAFRRSWL 121

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDR---------LLIKP 175
              G+ A  +     +    SM P    GD+L+++ +  +   G R         +    
Sbjct: 122 QRIGVSA--SSAVLARAAGDSMAPTIHDGDMLLIDRSRAEAPRGPRGPKDTRPAPIFAIL 179

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
             G    K +    G ++ L+S N  +  +  ++  +  I R++W 
Sbjct: 180 DDGLARVKRIELVPGGTLALLSDNPVFGPEFRQIGSVSIIGRVMWW 225


>gi|269795598|ref|YP_003315053.1| SOS-response transcriptional repressor, LexA [Sanguibacter keddieii
           DSM 10542]
 gi|269097783|gb|ACZ22219.1| SOS-response transcriptional repressor, LexA [Sanguibacter keddieii
           DSM 10542]
          Length = 258

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 54/220 (24%), Gaps = 13/220 (5%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + E I    +     PS   +    GL   S  K +   +E +       +  + +    
Sbjct: 37  VLETIRESVDTRGYAPSMREIGEAVGLTSPSSVKHQLTTLERKGYLRRDPNRPRAMELVV 96

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------TGNKWNTVGV 120
               Q         R   +  + +                   P       G       V
Sbjct: 97  PGPAQGAPTGELTSRPAGRALRSVSTQQTADVDLDSHPTPSFVPVVGRIAAGGPILAEQV 156

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E   P         +    +    SM+      GD +++        G+ +      G+
Sbjct: 157 VEDVFPLPRQLVGDGELFLLRVTGESMVDAAICDGDWVVVRRQPVAENGEIVAAMID-GE 215

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         + LM  N  +        +   + RI+
Sbjct: 216 ATVKTFKRV-DGHVWLMPHNDAFSPIL--GDEATILGRIV 252


>gi|229916139|ref|YP_002884785.1| SOS-response transcriptional repressor, LexA [Exiguobacterium sp.
           AT1b]
 gi|259494474|sp|C4L2T2|LEXA_EXISA RecName: Full=LexA repressor
 gi|229467568|gb|ACQ69340.1| SOS-response transcriptional repressor, LexA [Exiguobacterium sp.
           AT1b]
          Length = 206

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 57/226 (25%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   S   ++I + I          PS   +    GL   ++ +    R    G  R   
Sbjct: 1   MKKMSARQQQILDFIKDEVRAKGYPPSVREIGEAVGLASSSTVHGHLDRLEKRGLIRRDK 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+                               +E   + + P        + +    N 
Sbjct: 61  TK-----------------PRAIEILTDDMPTMEEQESVMYVPVIGKVTAGTPITAIENV 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
                +P      +                 SM+      GD +++      + G+ ++ 
Sbjct: 104 EEHFPLPAHIVGSD-------NVYMLSVSGDSMINAGILDGDRVLVRQQSTADNGEIVVA 156

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G+   K +       + L   N        +   +  + +++
Sbjct: 157 MTEEGEATVKRIYK-EASKVRLQPENDELEAMYFDN--VSILGKVI 199


>gi|330978032|gb|EGH77935.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 243

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K                         +      ++     + G   + +         
Sbjct: 65  GPKHPNECANENTGGDTRIIIHQARNVSRGDVEIQIFMEAESTHGVGKTVLAEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P     + GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231


>gi|66043890|ref|YP_233731.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254597|gb|AAY35693.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
          Length = 243

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K                         +      ++     + G   + +         
Sbjct: 65  GPKHPNECANENTAGDTRVIIHQARNVSRGDVEIQIFMEAESTHGVGKTVL--AEALGQK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P     + GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231


>gi|294791876|ref|ZP_06757024.1| repressor LexA [Veillonella sp. 6_1_27]
 gi|294457106|gb|EFG25468.1| repressor LexA [Veillonella sp. 6_1_27]
          Length = 223

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%)

Query: 5   SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I E I D +   +   T   +    GL  TS  +S    +E      R P+     
Sbjct: 11  KQRRILEFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNTLEKFGYIKRDPNKNRAI 70

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +L  T  +I    +   S             +              G    G     V 
Sbjct: 71  TVLEDTKPSISVAGNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E            +     + Q  SM+ +   +GD+LI+      N GD ++ +    
Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
           +   K         I L   N  +    V+   IE   I  +
Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219


>gi|94994722|ref|YP_602820.1| Cro/CI family transcriptional regulator [Streptococcus phage
           10750.3]
 gi|94548230|gb|ABF38276.1| Transcriptional regulator, Cro/CI family [Streptococcus phage
           10750.3]
          Length = 271

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 37/247 (14%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++ + I ++ E  N+T + L+   G+   T+ +K ++     + +    + + +I   T
Sbjct: 22  EQLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKD--LKKLAEIFNVT 79

Query: 66  -----------------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                                 +++ +     +  ++K                      
Sbjct: 80  SDYLLGLTDSKLGKITIQNEQPEIVSIYNQLEQPRQEKVLNFANEQLEEQNKTVSIFDKK 139

Query: 109 FPTGNKWNTVGVPEIRSPHNGIY---------------AIQTQDTRHKTQDTSMLPLYRK 153
                 + T  V  + +   G Y                    DT  K    SM PL + 
Sbjct: 140 SEETEDYITDYVEGLVAAGLGAYQEDNLHMKVKLRSDDVPDEYDTIAKVAGDSMEPLIQD 199

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDI 212
            D+L +  + QV+  D  +     G    K L      +  L SLN  Y    +    DI
Sbjct: 200 NDLLFIKVSSQVDMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNKSYEEIYLSKDDDI 258

Query: 213 EWIARIL 219
             I  ++
Sbjct: 259 RTIGEVV 265


>gi|312961762|ref|ZP_07776260.1| putative prophage repressor [Pseudomonas fluorescens WH6]
 gi|311284021|gb|EFQ62604.1| putative prophage repressor [Pseudomonas fluorescens WH6]
          Length = 211

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 20/218 (9%)

Query: 10  WEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           W A+     +   +T   LA + G+               + R PS E + ++L A    
Sbjct: 4   WIALVKANMKDRKVTQGELAERLGMSQGGVGHWLN-----KRRVPSLEDMNRVLEALGLG 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             +++              K     +  P                  +            
Sbjct: 59  YLEVVQQVRERADEAPALVKRYNPYFRYPVSDWDALCEVC-------DERPAYGDARFEL 111

Query: 129 GIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAK 183
             Y  +           +M          G +++++ A+    G  ++ +   +     +
Sbjct: 112 SDYHARGDAFWLPVTGDAMTAPTGLSIAAGMLILVDPALIAEPGKLVVAQWADSPQATFR 171

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
            L+   G+   L+ LN  YP     + D   +  ++ A
Sbjct: 172 QLLEESGQRY-LVPLNPTYPKQRFTV-DCRILGVVVQA 207


>gi|332855796|ref|ZP_08436047.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013150]
 gi|332870031|ref|ZP_08439007.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013113]
 gi|332727271|gb|EGJ58715.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013150]
 gi|332732531|gb|EGJ63782.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013113]
          Length = 213

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 72/208 (34%), Gaps = 18/208 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   I ++ +   L+   L    G+   +    ++   E   ++ + E++ ++L  T 
Sbjct: 2   ETIGLRIQKLRKEKKLSKVKLGDLVGVSDVTVGFWEKDVNE--PKYENLEALCQVLDTTI 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           + +   ++      +      + +P+L +  +G+     S           +  P     
Sbjct: 60  DYLKYGVNNNEQSVKDLRPITRMLPVLDYVQAGNWTNVRSIQ--PHEIELWLPAPPEAGR 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDIVAK 183
                           Q TS  P ++ GD++ ++  I    V  G+ ++          K
Sbjct: 118 ---------NSFYMIVQGTSNTPHFKDGDLICIDPDIPLEYVQTGEMIVAMCD-DQATFK 167

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            L+        L +LN  +  + + + +
Sbjct: 168 ALVRENKNMY-LQALNGNFHPNIIPLKE 194


>gi|119962894|ref|YP_947368.1| LexA repressor [Arthrobacter aurescens TC1]
 gi|171704632|sp|A1R556|LEXA_ARTAT RecName: Full=LexA repressor
 gi|119949753|gb|ABM08664.1| LexA repressor [Arthrobacter aurescens TC1]
          Length = 247

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 58/220 (26%), Gaps = 12/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            KKI E I R    +   PS   +    GL   +S  ++  +    G  R        + 
Sbjct: 28  QKKILETIQRSVNDNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLR--RDPKRPRA 85

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGV 120
           +            +P  +  TT +    + +     +         G    G        
Sbjct: 86  MEVLMPLTLDGGAIPGVEAPTTLRSAGGLAVTELASASDTAMVPLVGRIAAGGPILADQT 145

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E             +    K    SM+      GD +++        GD +       +
Sbjct: 146 VEDVLALPRQLVGHGELFMLKVAGDSMIDAAICDGDWVVVRRQNDAINGDIVAALLD-DE 204

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +R     L+  N  Y            + +++
Sbjct: 205 ATVKTF-RQRDGHTWLLPQNTQYEPIL--GDQATIMGKVV 241


>gi|228475326|ref|ZP_04060049.1| repressor LexA [Staphylococcus hominis SK119]
 gi|314936506|ref|ZP_07843853.1| repressor LexA [Staphylococcus hominis subsp. hominis C80]
 gi|228270638|gb|EEK12057.1| repressor LexA [Staphylococcus hominis SK119]
 gi|313655125|gb|EFS18870.1| repressor LexA [Staphylococcus hominis subsp. hominis C80]
          Length = 206

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 56/225 (24%), Gaps = 31/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +    +I++ I  + +     PS   +    GL   ++ +                
Sbjct: 1   MRELTKRQSEIYDYIKHVVQIKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L                +  + +  +       + P          +    N  
Sbjct: 50  ------LEEKGYIRRDPTKPRAIEIVSDQNNDMTREETIYVPVIGKVTAGVPITAVENIE 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
               +PE  +  +      +          SM       GD +I+ S      GD ++  
Sbjct: 104 EYFPLPEHLTSTHN-----SDVFILNVIGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 158

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K     +     L   N       ++   +  I +++
Sbjct: 159 TEDDEATVKRFFKEKN-RYRLQPENSAMSPIYLDN--VTVIGKVI 200


>gi|221328664|ref|YP_002533506.1| Repressor [Salmonella phage epsilon34]
 gi|193244732|gb|ACF16671.1| Repressor [Salmonella phage epsilon34]
          Length = 212

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 19/216 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            +  ++  L    +A   G+   + +           R PS + I  I      T   + 
Sbjct: 3   KQRIDQLGLNQDKVAEHLGVTKGAVSHWLNG-----RRNPSIQEIGAIFQYLGVT--DVR 55

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                     E  E++     F              P    +         S        
Sbjct: 56  FNADGTFSVGESTEQKPVKPQFEYPFFSHVQAGMFTPEFRTFTERDAECWISTTKKA--- 112

Query: 134 QTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                  + +  SM       P + +G +++++  + V+ GD  + +    +   K LI 
Sbjct: 113 SDSSFWLEVEGHSMTAPAGSRPSFPEGMLILVDPEVPVDPGDFCIARLCGDEFTFKKLIK 172

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
             G+   L  LN  +P+          + +++ ASQ
Sbjct: 173 DSGQVF-LQPLNPQFPIMPCN-EQCRVVGKVV-ASQ 205


>gi|227833301|ref|YP_002835008.1| LexA repressor [Corynebacterium aurimucosum ATCC 700975]
 gi|262184285|ref|ZP_06043706.1| LexA repressor [Corynebacterium aurimucosum ATCC 700975]
 gi|227454317|gb|ACP33070.1| LexA repressor [Corynebacterium aurimucosum ATCC 700975]
          Length = 240

 Score = 89.8 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 11/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            ++I E I          PS   +    GL  TS    +   +E +    R P+      
Sbjct: 20  QRRILEVIHDAVMLRGYPPSIREIGDATGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 79

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +                  G+  +  +   P +    +        G    G+       
Sbjct: 80  VRHFPGGE--DSKKPGRKTGQANKSPDLSTPDIPEDAATPNYIPVVGRIAAGSPITAEEN 137

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +   P  G      +    +    SM       GD +I+ S      G+ +       +
Sbjct: 138 VDAYFPMPGEILGSGELYMLQVVGDSMQDAGILNGDWVIIRSQSVAEEGEFVAALLDGEE 197

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         + L+  N  Y     +  + E + +++
Sbjct: 198 ATVKEFHRDSSG-VWLLPHNDAYSPI--KGDEAEIMGKVV 234


>gi|313885235|ref|ZP_07818987.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619926|gb|EFR31363.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 228

 Score = 89.8 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 19/228 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FS  +    + R  +   L+ + LAR+  +  +S+   +    +      + E + K+L
Sbjct: 1   MFSGDQ----LKRRRQERQLSQADLARQLNIARSSYYNWETGKTQ--PNQANLEHLAKLL 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT----------G 112
             T +   Q   L     +    ++ ++               +                
Sbjct: 55  LVTPDYFDQDYRLLHPYHQLQSARQDQVVDFTDQLLEEQKRAQAPKIAALFAYKVYEKLS 114

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
                    +              D        SM PLY  G + ++        G    
Sbjct: 115 AGTGYGYFEDRSYDTVFHTEKIDHDLASWVYGDSMEPLYLNGSVALIKDTGFDYDGGI-Y 173

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
                G    K +       + L+SLN  Y         +   I +++
Sbjct: 174 AVDWDGQTYLKRVYR-EAEGLRLVSLNQKYQDKFAPYSEEPRIIGKLV 220


>gi|294793737|ref|ZP_06758874.1| repressor LexA [Veillonella sp. 3_1_44]
 gi|294455307|gb|EFG23679.1| repressor LexA [Veillonella sp. 3_1_44]
          Length = 223

 Score = 89.8 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%)

Query: 5   SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I E I D +   +   T   +    GL  TS  +S    +E      R P+     
Sbjct: 11  KQRRILEFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +L  T  +I    +   S             +              G    G     V 
Sbjct: 71  TVLEDTKPSISVTGNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E            +     + Q  SM+ +   +GD+LI+      N GD ++ +    
Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
           +   K         I L   N  +    V+   IE   I  +
Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219


>gi|320093996|ref|ZP_08025822.1| LexA repressor [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979077|gb|EFW10594.1| LexA repressor [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 225

 Score = 89.8 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 14/222 (6%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58
            SH++  I   I+    R    PS   +A + GL  P++          G       E  
Sbjct: 6   LSHRQAEILRVINDKLTRDGFPPSVREIALRVGLASPSTIKHHLDSLEAGG----YLERH 61

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +  A + T      L   +  T          +    S SG     G    G+     
Sbjct: 62  AGLPRALDLTDRARAVLGVGNPPTGAGVVTVEVPVGHADSDSGAVPLVGRIAAGSPITAE 121

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E           +      +    SM+      GD +++ +      GD +      
Sbjct: 122 QYVEDVFALPTRLTGRGDLFMLEVSGQSMVDAGILDGDYVVVRAQADAQSGDFVAAMID- 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   K      G  + L+  N  Y            + +++
Sbjct: 181 GEATVKEFSR-SGGHVWLLPHNEDYAPI--PGDGATVLGKVV 219


>gi|229544057|ref|ZP_04433116.1| SOS-response transcriptional repressor, LexA [Bacillus coagulans
           36D1]
 gi|229325196|gb|EEN90872.1| SOS-response transcriptional repressor, LexA [Bacillus coagulans
           36D1]
          Length = 206

 Score = 89.8 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 63/227 (27%), Gaps = 37/227 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWP 53
           M   S   + I + I    +     PS   + +  GL   ++ +    R   +G   R P
Sbjct: 1   MAKLSKRQQAILDFIKHEVKTKGYPPSVREIGQAVGLASSSTVHGHLARLESKGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL    E   Q +      G+ T                             N
Sbjct: 61  TKPRAIEILDHDEEIPAQNVVNVPVVGKVTAGIPIT--------------------AVEN 100

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +PE   P              + +  SM+      GD +I+ S    N GD ++
Sbjct: 101 IEEYFPLPEHLVPS------DESVYMLEIEGDSMVDAGILNGDYVIVRSQQTANNGDIVV 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       ++   +  +  ++
Sbjct: 155 AMTDENEATVKRFFKEKD-YFRLQPENQTMEPIILKN--VTILGVVI 198


>gi|227535713|ref|ZP_03965762.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227186680|gb|EEI66747.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 257

 Score = 89.8 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 68/256 (26%), Gaps = 50/256 (19%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + ++  ++   LA K G+  ++  + ++  IE        E + K+  A + 
Sbjct: 2   NVGERMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVP----IEVVAKVANALDI 57

Query: 68  TI--------------------------------CQLLDLPFSDGRTTEKKEKEIPLLYF 95
                                                  L             E  +   
Sbjct: 58  KPEVLMGLKADTVVDKIHDTVVQLHPERQQKVYTYAEKQLNEQQNPDNVVSLDEALVERN 117

Query: 96  PPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                      G+   G     +    P               D   K    SM P Y  
Sbjct: 118 LDEPEFNVEVDGIVAAGYGAFNDDRDEPMDTVKIPDSAIPSHYDYCFKVVGDSMHPTYDD 177

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---------YPV 204
           G+ + +     V  G   ++         K LI  +   + L SLN           YP 
Sbjct: 178 GEFVFVQKTQDVTNGMIAVVDID-DMTFIKKLIFEQD-RLCLRSLNDDVDEETGERIYPD 235

Query: 205 DTVEMSD-IEWIARIL 219
              + +D IE I +++
Sbjct: 236 FYADDTDNIEVIGKVV 251


>gi|288905287|ref|YP_003430509.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|306831364|ref|ZP_07464524.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978272|ref|YP_004287988.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732013|emb|CBI13578.1| putative transcriptional regulator [Streptococcus gallolyticus
           UCN34]
 gi|304426600|gb|EFM29712.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178200|emb|CBZ48244.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 226

 Score = 89.8 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------- 55
            FS +K    +  + E    + + +A+   +   S+   +    +   +  +        
Sbjct: 1   MFSGEK----LKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSQLLGV 56

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNK 114
           E  + +           L+            +                +        G  
Sbjct: 57  EETYFVSEYDIVDTYFKLNKDNRHKLENYADDLLKEQEKIVQLPKYYAYKVFEKLSAGTG 116

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           ++     +              D        SM P Y  G+++++        G  +   
Sbjct: 117 YSY--FGDGNYDTVFYDEQLDHDFASWVFGDSMEPTYLNGEVVLIKQTGFDYDG-AIYAV 173

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
              G    K +       + L+SLN  Y        +    I +I+
Sbjct: 174 DWDGQTYIKKVYREEDG-LRLVSLNKHYADKFAPYDENPRIIGKIV 218


>gi|330502554|ref|YP_004379423.1| LexA repressor [Pseudomonas mendocina NK-01]
 gi|328916840|gb|AEB57671.1| LexA repressor [Pseudomonas mendocina NK-01]
          Length = 204

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 61/223 (27%), Gaps = 34/223 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G                     + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSP---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  +         +   G    G    G    
Sbjct: 46  HLKALARK----------GAIEMTPGASRGIRIPGFEAGAANEDEGLPVIGRVAAGAPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   + +  SM  +    GD+L +++  +   G  ++ + 
Sbjct: 96  AQQHVEESCQINPAFFQPKADYLLRVRGMSMKDIGIFDGDLLAVHTTREARNGQIVVARI 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216
              ++  K      G  + L++ N  +    V++   D+    
Sbjct: 156 D-DEVTVKRFKR-EGNKVWLIAENPEFAPIEVDLEHQDLVIEG 196


>gi|294670746|ref|ZP_06735608.1| hypothetical protein NEIELOOT_02455 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307534|gb|EFE48777.1| hypothetical protein NEIELOOT_02455 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 251

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 68/237 (28%), Gaps = 45/237 (18%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           + S +A K G+     +K        ++  P  +++ KI   +   +  L+         
Sbjct: 16  STSEIADKIGMSYVGLSKVFS-----KDALPKADTLLKIHEVSGCDLKWLMTGEGVPFPK 70

Query: 83  TEKKEKEIPLLYFPPSGS----------------------------GGFFDSGVFPTGNK 114
                    L       +                                 +     G+ 
Sbjct: 71  GAATGSNQELQEPVAGYNAKWNAKSIQTAPEVLDTLGNPVDLSEFVFIPRYNVKVAAGHG 130

Query: 115 WNTVGVPEIRSPHNGIYAI-------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
           +         +     Y I           +  K    SM  +   GD ++++ +     
Sbjct: 131 YAVEDEKPRFTMAFRKYWIRFYLHTDPKSLSVVKVAGDSMEGILFDGDNVLVDHSRN-QP 189

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILW 220
           G+ L +     +++ K   +  G  + + S N  Y    + ++D    +E I +++W
Sbjct: 190 GNGLYVLRIGEELIVKRTQTLPGNYLLVSSANEAYQPFELNLADETSGVEIIGKVVW 246


>gi|294636132|ref|ZP_06714555.1| repressor protein [Edwardsiella tarda ATCC 23685]
 gi|291090557|gb|EFE23118.1| repressor protein [Edwardsiella tarda ATCC 23685]
          Length = 235

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 63/225 (28%), Gaps = 16/225 (7%)

Query: 5   SHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
                   +    ++         + +A K  + P + +K          R    + + K
Sbjct: 6   KRDDFPTRLALACDKAGFPRYGRQADIAGKMKVTPKAVSKWFNGESA--PRGTKLDLLAK 63

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---T 117
           +      +   L      DG    ++ +                  GV   G        
Sbjct: 64  V---LGTSSAYLAGYSEEDGIVEMRQRQIGDSFRVDVLDVQASAGPGVMVDGQFIEKVRA 120

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +      +        +        +  SM      GD + ++ ++    GD + +    
Sbjct: 121 IEYTTEHARMLFGGRSEDSVKVITVKGDSMEGTINPGDEIFVDVSVNFFDGDGVYVFVYE 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
             +  K L   +   + ++S N  Y    ++  D   +  +A++L
Sbjct: 181 RCLHIKRLQMHKN-KLLVISDNKVYQPWDIDKEDEPKLYIMAKVL 224


>gi|255101060|ref|ZP_05330037.1| SOS regulatory protein [Clostridium difficile QCD-63q42]
 gi|255306924|ref|ZP_05351095.1| SOS regulatory protein [Clostridium difficile ATCC 43255]
 gi|328887636|emb|CAJ68806.2| Transcriptional regulator, LexA repressor [Clostridium difficile]
          Length = 211

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 53/221 (23%), Gaps = 26/221 (11%)

Query: 3   SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             + K+  I E I          P+   +    GL  TS   S                +
Sbjct: 4   DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 51

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K+     +             +  +       ++  P           +    N    +
Sbjct: 52  EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 110

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P             + +   + +  SM+       D ++++          ++     
Sbjct: 111 PFPASLVKG-------SNNFVLRVKGESMINAGILDEDYVVVDKKNTALNSQIVVALING 163

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                K      G  I L   N       +  S++E +  +
Sbjct: 164 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 203


>gi|229008343|ref|ZP_04165820.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4]
 gi|228752911|gb|EEM02463.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4]
          Length = 209

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 73/222 (32%), Gaps = 22/222 (9%)

Query: 1   MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M +   K+I+   + +  +R+ +  + LA    +  T+ +   +     R      + I 
Sbjct: 1   MDAQKMKEIFASNLKKYLDRNGINQTYLANSIHVPETTVSNWIKANTYPRP-----DKIQ 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +          L +   S+      +  ++P+L     G   + +      G ++ T  
Sbjct: 56  LLADYFKINRSDLTEEKPSNLYEASIRPVKVPILGKIACGLPIYAEENF--EGFRYETSD 113

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTG 178
           +             + +    + +  SM P    G  +++     V  G+   ++     
Sbjct: 114 ILP-----------RGEVYYLEAKGNSMEPTIPNGSFVLIRKQDDVENGEIAAVLINGDT 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           +   K +  + G  + LM  N  Y    +  +     I + +
Sbjct: 163 EATLKRVKKQ-GDVVILMPDNSSYEPIVLTSNVPARIIGKAI 203


>gi|227522302|ref|ZP_03952351.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus hilgardii ATCC 8290]
 gi|227090509|gb|EEI25821.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus hilgardii ATCC 8290]
          Length = 235

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 29/234 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + E  +      A   G+  T+     R  ++        E+I KI         
Sbjct: 5   DYLKDLIEIKSGNVKAFADSIGMAYTTI----RSILDRGIMNAKMENIIKICDGLGIKPE 60

Query: 71  QLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
            ++ L  S    T          ++  +  +         +  +    +    + +P  R
Sbjct: 61  DIVKLESSVVSDTNKIMLQLHPSRQEKVYNYASDQLDEQNNEKISSMFDHKPMIEIPAGR 120

Query: 125 SPHNGIYAIQTQ-------------------DTRHKTQDTSMLPLYRKGDILILNSAIQV 165
           S   G                          D        SM PL +KG  + ++   +V
Sbjct: 121 STAAGSPINGEDQDTQLIHKMIAGEKVPAGADELITVDGDSMEPLLKKGSQVFIHYQPEV 180

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+  ++  R   +  K +      ++ L S+N  Y     +  ++  I +++
Sbjct: 181 EDGEIAIVHIRDIGVTCKKIYVNEDNTVTLRSINEAYDDMHFDCDEVNVIGKVI 234


>gi|254521991|ref|ZP_05134046.1| phage-related repressor protein [Stenotrophomonas sp. SKA14]
 gi|219719582|gb|EED38107.1| phage-related repressor protein [Stenotrophomonas sp. SKA14]
          Length = 297

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI---FK 60
            S     + +     R  +T +  A   G       + +     GR++    + +    +
Sbjct: 66  MSQMDFAQRVTMARRRVGMTMAQAAELIGCSRPLLAQWE----SGRSKSLGGKYLLGAAR 121

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                 E + +L D        + +K   +     P          G    G        
Sbjct: 122 AYKVNPEWLAELTDDDGYPWDPSARKISNVSETETPAGYLRFDLYEGAAGMGPGIINQDY 181

Query: 121 PEIRSPHN----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           PE+               G      +      +  SM P    GD++ +++A     GD 
Sbjct: 182 PEVIRTLEVAEWEVRRKLGFLPRPGRIQIITGRGPSMRPKIEDGDVVWIDTACDYFDGDD 241

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
             +    G+   K+L  R    + ++S+N  +P    +   ++   R
Sbjct: 242 YYLINIEGETSIKMLQRRSDG-VYVVSVNPEFPAWRPDPDSLQVKGR 287


>gi|229591326|ref|YP_002873445.1| putative phage repressor [Pseudomonas fluorescens SBW25]
 gi|229363192|emb|CAY50253.1| putative phage repressor [Pseudomonas fluorescens SBW25]
          Length = 210

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 20/210 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   +T   LA + G+               + R PS   + ++LAA      ++    
Sbjct: 12  MEDRKVTQGELAERLGMSQGGVGHWLN-----KRRAPSLVDMNRVLAALGLGYLEVALDI 66

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
                    ++   P   +P S   G  +          +   + +        Y  Q  
Sbjct: 67  RERAEEAPPEKNYNPYYRYPVSDWRGVCEVREERAPYGMSRFELTD--------YHAQGD 118

Query: 137 DTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRGR 191
                    +M          G +++++ AI    G  ++ +   +     + L+   G+
Sbjct: 119 AFWLPVTGDAMTAPSGLSVSAGMMILVDPAIAAEPGKLVVAQWAESPHATFRQLLEESGQ 178

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
            + L+ LN  YP       +   +  ++ A
Sbjct: 179 -LYLVPLNPTYPKRLFT-DECRILGVVVQA 206


>gi|84495889|ref|ZP_00994743.1| LexA repressor [Janibacter sp. HTCC2649]
 gi|84382657|gb|EAP98538.1| LexA repressor [Janibacter sp. HTCC2649]
          Length = 250

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 61/219 (27%), Gaps = 12/219 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            +K+ + I    +R    PS   + +  GL   S    +   +E +    R P+     +
Sbjct: 31  QRKVLDVIRNSVDRRGYPPSMREIGQAVGLTSPSSVSHQLHALEKKGYLRRDPNRPRALE 90

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  + +T   +              + +          +      G    G        
Sbjct: 91  VI--SPDTPSDIRGYRGGAAPDDIDADLDPTGSGDARPEATYVPVLGRIAAGVPIMAEES 148

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +   P       +      K    SM+      GD +++      + GD +       +
Sbjct: 149 VDEVFPLPKQIVGEGTLFLLKVVGDSMIDAAICDGDWVVVRQQPTADNGDIVAAMLD-NE 207

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K    +    + LM  N  +     +      + ++
Sbjct: 208 ATVKTFKRK-DGKVWLMPHNPAFDPI--DGDHATILGKV 243


>gi|227503458|ref|ZP_03933507.1| LexA repressor [Corynebacterium accolens ATCC 49725]
 gi|227075961|gb|EEI13924.1| LexA repressor [Corynebacterium accolens ATCC 49725]
          Length = 236

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 55/217 (25%), Gaps = 9/217 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I   I          PS   +   AGL  TS    +   +E +       +  + + 
Sbjct: 20  QRRILNVISDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 79

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             +         P    +         P      +        G    G         + 
Sbjct: 80  VRHLNTDDAEKKPGRKAKDVPDTSARGPEESAAVAYIPVV---GRIAAGAPITAEENIDT 136

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P         +    +    SM       GD +I+ S      G+ +       +   
Sbjct: 137 YFPMPDEVVGGGELYMLQVVGDSMQDAGILNGDWVIIRSQSVAEEGEFVAALLDGSEATV 196

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K         + L+  N  YP       D E + +++
Sbjct: 197 KEFHRDSSG-VWLLPHNDAYPPI--NGDDAEIMGKVV 230


>gi|312873795|ref|ZP_07733839.1| peptidase S24-like protein [Lactobacillus iners LEAF 2052A-d]
 gi|311090676|gb|EFQ49076.1| peptidase S24-like protein [Lactobacillus iners LEAF 2052A-d]
          Length = 230

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 19/231 (8%)

Query: 4   FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +K+I+   +     ++ +  + L    G    + +       +   R    E +    
Sbjct: 3   LGNKEIFSQNLKYYMYKYGVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60

Query: 63  AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSG----------SGGFFDSGVF 109
                 + +       D           ++  +  +                  +  G  
Sbjct: 61  NIKKSDLVEKQTDKQIDILPVYNQLADIRKHKVYSYAQQQLDEQNSNLNEHRSIYLVGSS 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
             G   +   +       + I A    D     +  SM P      I+  +    +  G+
Sbjct: 121 AAGLPLDYGDLDAELIDLSNIPA--KADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGE 178

Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 179 IGIFEINGSAVTCKKYYVDYGSKKIVLKSINPKYEPMYFNGEQVRILGKVV 229


>gi|309973095|gb|ADO96296.1| Probable prophage repressor protein [Haemophilus influenzae R2846]
          Length = 218

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58
           + E I    E+  ++   LA +                     ++       R P  E I
Sbjct: 4   LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             I  A N     L ++   +   +E KE         P  +G + D       + +  +
Sbjct: 59  SIISKALNI----LPEVLAFNSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
               I S               + +  SMLP + +GD+++++  I    G  +       
Sbjct: 115 PSTVIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIAPTPGKFVAAINGDN 165

Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216
           +   K       R        +L+ LN  +P  +    +I  I 
Sbjct: 166 EATFKQYKELGTRTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209


>gi|326692763|ref|ZP_08229768.1| LexA repressor [Leuconostoc argentinum KCTC 3773]
          Length = 213

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 55/220 (25%), Gaps = 28/220 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              ++   I      +   P+   +    GL  +S      +R   +G     +++   +
Sbjct: 9   KQLQVLRFIHEAQTNNGYPPTVREVGEAVGLSSSSTIHGHIERLVKKGYLLKDASKPRAR 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +  T+  +  L             +      +                          +
Sbjct: 69  AIEVTDLGLEALGVSTTPGRIPVLGQVTAGTPILAV--------------EEEATEFFPI 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+                    +  SM+ +    GD +I+      + GD ++      +
Sbjct: 115 PDNLMQF------DGDMFMLNVRGNSMVNIGILDGDKVIVRKQDNADNGDVVVAMNDDDE 168

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       ++   +  + +++
Sbjct: 169 ATVKRFFR-EADHFRLQPENDAMAPIILDN--VTILGKVI 205


>gi|254490799|ref|ZP_05103982.1| LexA repressor [Methylophaga thiooxidans DMS010]
 gi|224463971|gb|EEF80237.1| LexA repressor [Methylophaga thiooxydans DMS010]
          Length = 202

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 56/223 (25%), Gaps = 32/223 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTP--SGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57
           M +   +   + I    + H  +P  S +A   G+    + ++  +  ++          
Sbjct: 1   MLTEREQNTLDFIRHYVDEHGRSPLVSEIAEGLGIRSQGTTHRYIQALVDAGL------- 53

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                                      +  +         +        G    G     
Sbjct: 54  -------------------LERHVGRTRGLRLTEQPEDIAADPVTLPVMGKIAAGRLVEA 94

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176
           V         +            K    SM+      GD +++ S      GD ++    
Sbjct: 95  VADESEIDLSDMF--TGKGRFVLKVNGDSMIDKAIMSGDYVVVQSQSTARHGDIVVALVD 152

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             D   K L+     ++ LM  N  Y   T+    +     ++
Sbjct: 153 GFDATLKTLLLNDDGTVTLMPANSHYEAVTLPADRVRVQGIVV 195


>gi|270283997|ref|ZP_05965389.2| repressor LexA [Bifidobacterium gallicum DSM 20093]
 gi|270277903|gb|EFA23757.1| repressor LexA [Bifidobacterium gallicum DSM 20093]
          Length = 263

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 62/217 (28%), Gaps = 18/217 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + +  AI  +   +   PS   L +  GL  TS  K +   +  +       +  + + 
Sbjct: 56  QQAMLNAIQELTSANGFAPSMRELGQAVGLSSTSSVKHQLQVLADKGYIRKVGNKGRAIE 115

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                I        +    +      +      P        + +    +  + + +P  
Sbjct: 116 I----IDADTPTLGNIADISISGLPSLENSMDVPLVGSIAAGTPITAEQHVEDVMRLPVR 171

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            +          +    +    SM+      GD +++      + GD +       +   
Sbjct: 172 LTGT-------GKLFMLEVHGDSMVDAAICDGDFVVVREQHTADNGDIVAAL-LGDEATV 223

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K         I LM  N  Y     + +  + + +++
Sbjct: 224 KTF-RNEDGHIWLMPHNPSYSPI--DGTHAQIMGKVV 257


>gi|313123989|ref|YP_004034248.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280552|gb|ADQ61271.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 209

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 62/219 (28%), Gaps = 31/219 (14%)

Query: 9   IWEAIDRMAERHNLTPSGLARKA-------GLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           I   I  + +   +T   LA +        G      +K +    E     P   S+ ++
Sbjct: 3   IGTRIRLLRKSKKMTLEELANQLNSRSSSSGFTKGRLSKWENDREE-----PKLSSLNQV 57

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               N  I    +           +          P          +    N  + + VP
Sbjct: 58  ARFFNVDIDYFFNDSHPSNTLPLSRNT-----IRVPVIGTIACGDPIDADENIVDYINVP 112

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDI 180
           E          I         + +SM P    GD +++     V  G+   ++       
Sbjct: 113 EP---------IPANAFALICEGSSMEPSIIDGDKVVIEPTPDVEDGEVAAVLVDDQTKA 163

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K +    G SI LM  N  Y    ++    +   RI+
Sbjct: 164 TLKRIKHI-GNSIWLMPDNRDYDPIVLDA---QHPGRII 198


>gi|148825949|ref|YP_001290702.1| putative prophage repressor CI [Haemophilus influenzae PittEE]
 gi|229846735|ref|ZP_04466842.1| putative prophage repressor CI [Haemophilus influenzae 7P49H1]
 gi|148716109|gb|ABQ98319.1| putative prophage repressor CI [Haemophilus influenzae PittEE]
 gi|229810224|gb|EEP45943.1| putative prophage repressor CI [Haemophilus influenzae 7P49H1]
          Length = 218

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58
           + E I    E+  ++   LA +                     ++       R P  E I
Sbjct: 4   LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             I  A N     L ++   D   +E KE         P  +G + D       + +  +
Sbjct: 59  SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
               I S               + +  SMLP + +GD+++++  I    G  +       
Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165

Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216
           +   K       +        +L+ LN  +P  +    +I  I 
Sbjct: 166 EATFKQYRELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209


>gi|126699540|ref|YP_001088437.1| SOS regulatory protein [Clostridium difficile 630]
 gi|123363348|sp|Q187P1|LEXA_CLOD6 RecName: Full=LexA repressor
          Length = 215

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 53/221 (23%), Gaps = 26/221 (11%)

Query: 3   SFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             + K+  I E I          P+   +    GL  TS   S                +
Sbjct: 8   DLTEKQVLILEFIKSQIILKGYPPAVREICTAVGLRSTSTVHSH------------LNKL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K+     +             +  +       ++  P           +    N    +
Sbjct: 56  EKLGYIRKDPTKPRAIEVLERSKVNDVSGANQEIIELP-LVGQITAGEPILAQQNIEEYI 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P             + +   + +  SM+       D ++++          ++     
Sbjct: 115 PFPASLVKG-------SNNFVLRVKGESMINAGILDEDYVVVDKKNTALNSQIVVALING 167

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                K      G  I L   N       +  S++E +  +
Sbjct: 168 ESATVKRFFK-EGNLIRLQPENDFMEPIMLNDSEVEIVGIV 207


>gi|255325148|ref|ZP_05366254.1| repressor LexA [Corynebacterium tuberculostearicum SK141]
 gi|255297713|gb|EET77024.1| repressor LexA [Corynebacterium tuberculostearicum SK141]
          Length = 234

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 18/220 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            ++I   I          PS   +   AGL  TS    +   +E +    R P+      
Sbjct: 21  QRRILNVISDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 80

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      T            +  ++   E   + + P        + +    N      +
Sbjct: 81  VRHL--NTDDGAKKPGRKPAKPEQQVPAEAGAVSYIPVVGRIAAGAPITAEENVDTYFPM 138

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+                  +    SM       GD +I+ S      G+ +       +
Sbjct: 139 PDEVVGG-------GDLYMLQVVGDSMQDAGILDGDWVIIRSQSVAEEGEFVAALLDGAE 191

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         + L+  N  Y        D E + +++
Sbjct: 192 ATVKEFHRDSSG-VWLLPHNDAYAPI--NGDDAEIMGKVV 228


>gi|187251395|ref|YP_001875877.1| XRE family transcriptional regulator [Elusimicrobium minutum
           Pei191]
 gi|186971555|gb|ACC98540.1| Transcriptional regulator, XRE family [Elusimicrobium minutum
           Pei191]
          Length = 261

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 74/214 (34%), Gaps = 20/214 (9%)

Query: 13  IDRMAER--HNL---TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I+ + +   + +   +   LA K  +  ++ +      I+     P +++I  I     +
Sbjct: 40  IEALLKEWNNGVLKGSQKKLATKLDVGESAVSGWISGRIK-----PGSDNIIAISKIFKK 94

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  ++ ++     ++ +       +         G   +  F       T   P +  P 
Sbjct: 95  SEKEIKEIFGIQDKSKKDLPTMEMVRINNYVPFMGEIYADRFNCAILEET---PSLYIP- 150

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--QVNCGDRLLIKPRTGDIVAKVL 185
             +      D   K +   M P  ++G  +IL       V+ G+ ++ +    +   K  
Sbjct: 151 --VLRGDDNDYAAKVRGDCMEPSLKEGTTIILRKCTITDVSEGEIVIAR-LEDECTLKRF 207

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +I L+  N  Y      + +IE  A+++
Sbjct: 208 Y-LESNTIWLIPDNDAYEPIFGSIHEIEIQAKVI 240


>gi|152987887|ref|YP_001347761.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa
           PA7]
 gi|150963045|gb|ABR85070.1| transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa
           PA7]
          Length = 283

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 64/278 (23%), Gaps = 60/278 (21%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR----------- 51
             +  ++  AI+      N++   LA + G+ P S       G   + +           
Sbjct: 1   MLTGPQLGAAIEAARLAKNMSKKALAEQFGVKPPSVQGWINTGRIDKAKLIELISFFSDV 60

Query: 52  -----------------------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88
                                   P + +  K++         L     +       +  
Sbjct: 61  VGAEHWGLSEKEAELIAPSSSHQHPGSSAAEKVMEMLQRHGKGLSGEAKAKIAQAVAESL 120

Query: 89  EIPLLYFPPSGSGGFF--------------DSGVFPTGNKW---NTVGVPEIR------- 124
           +  L          F                      G                      
Sbjct: 121 DGDLSTTSNVIHADFSRTTLVKGNTISIAQYDVRAAMGGGQVPAEYREFVRNLVVDKVQL 180

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                 Y+  T          SML       ++I++  I     + + +      +  K 
Sbjct: 181 DDLGLKYSDATNLKIITGWGQSMLGTIDDKSLIIVDVGITDFVEEGVYVFTWLQHLFVKR 240

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL--W 220
           +         L+S N  +      M D+ + A++L  W
Sbjct: 241 VQIHDAEHYLLVSDNKSFEPQKARMEDVHFQAKVLGAW 278


>gi|329116763|ref|ZP_08245480.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD
           2020]
 gi|326907168|gb|EGE54082.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD
           2020]
          Length = 225

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 64/215 (29%), Gaps = 12/215 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  E        LA + G+   ++ K ++     +    +   + K L  T   + + 
Sbjct: 7   LKQKREELGFEQQELAERIGVSKQAYFKWEKGLS--KPTKVNIAKLEKALNVTEGYLSED 64

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPEIRS 125
                    T   +EK I  +            +      + +  +          ++  
Sbjct: 65  EISSLYKQLTEPNQEKAITYVRDMVFSQKVISIAENRSEYHVYEKLSAGIGASVYGDLDY 124

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                      D        SM P Y+ G++ ++        G  +        I  K +
Sbjct: 125 DVVYYNEELPHDFASWVDGDSMEPTYQNGEVALIRETGFDYDG-AVYAVVWDSQIYIKKV 183

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
              +   + L+S+N  YP   V   +    + +I+
Sbjct: 184 YREKEG-LRLVSINKDYPDKFVPFDENPRVVGKIV 217


>gi|257470283|ref|ZP_05634374.1| transcriptional regulator, XRE family protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064494|ref|ZP_07928979.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690170|gb|EFS27005.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 224

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 14/216 (6%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KK+ + I+ +  + N   + LA K+G++  S N+       G+ +  +   + K+  A 
Sbjct: 14  RKKLGDYIEELRNKKNYGFNQLAMKSGVNVRSLNEIIN----GKAKKVNPFHLKKLAKAL 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIR 124
           N    +   +        +          F          +G     +   + + +P   
Sbjct: 70  NVDYKEFYKIVGYLDEDEKIVPNAEIAFNFKRVPVYENISAGYGAAESDILDYISLP--- 126

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
             + G +         +    SM        I+ +    ++                 K 
Sbjct: 127 -NYQGTFT--GDIFAVQVHGDSMENTIEDKSIVFIKKDAEIQNKKIGAFIVNNN-AYLKR 182

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
                     L S N  Y    ++   D   + + +
Sbjct: 183 YFEDEHGVF-LRSDNREYRDIEIKAGDDFIVVGKYI 217


>gi|237785678|ref|YP_002906383.1| LexA family transcriptional regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758590|gb|ACR17840.1| transcriptional regulator, LexA family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 244

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 62/229 (27%), Gaps = 14/229 (6%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53
           M S +    +I + I          PS   + + AGL  TS    +   +E +    R P
Sbjct: 14  MDSLTDRQHRIIDVIHDAIVLRGYPPSIREIGQAAGLTSTSSVAYQLKELERKGFLRRDP 73

Query: 54  STESI--FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +       KI   T  T    L     +   +  +      +             G    
Sbjct: 74  NKPRAVGLKIADPTKPTGSSSLHHADEESTPSASENVADSDIESNHPTPVFIPTIGRIAA 133

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
           G             P       +           SM       GD +++ S      GD 
Sbjct: 134 GTPILAEQEVTDEFPLPRELTGEGDLYILSVVGESMRDAGILDGDYVVVRSQNVAEIGDF 193

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++     G+   K     R   + L+  N  +        +   + +++
Sbjct: 194 VVAMID-GNATVKEFHRDRTG-VWLLPHNDAFDPI--PGDEATILGKVV 238


>gi|81428886|ref|YP_395886.1| LexA repressor [Lactobacillus sakei subsp. sakei 23K]
 gi|123742219|sp|Q38W54|LEXA_LACSS RecName: Full=LexA repressor
 gi|78610528|emb|CAI55579.1| Transcriptional repressor LexA [Lactobacillus sakei subsp. sakei
           23K]
          Length = 204

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 36/226 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54
           MT    K+  +   I    +     P+   +     L  TS       R   +G  +   
Sbjct: 1   MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+     L     T                   ++IP+L    +G               
Sbjct: 61  TKPRAIELTPAGLTAIG-------------ATPQKIPVLGVVTAGVPI------LAVEEA 101

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            +   +P            +        +  SM+      GD +I+      + GD ++ 
Sbjct: 102 TDYFPLPPSL-------QTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIA 154

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K           L   N  +    +  +++  + +++
Sbjct: 155 MTAEDEATCKRFFK-EADHYRLQPENDTFEPIIL--NEVSILGKVV 197


>gi|310658539|ref|YP_003936260.1| lexa [Clostridium sticklandii DSM 519]
 gi|308825317|emb|CBH21355.1| LexA [Clostridium sticklandii]
          Length = 208

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 51/217 (23%), Gaps = 28/217 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I   I    ++    PS   +     L  TS   S                + K+ 
Sbjct: 8   KQLEILLYIKEEIQKKGYPPSVREICSAVDLKSTSTVHSH---------------LNKLE 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                              + +++          P        + +    N    + +P 
Sbjct: 53  EYGYIKKDPTKPRAIEVILSDDEEGFYRRSSVDIPLLGVVTAGAPILAVENIEEFLPIPS 112

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               +             K +  SM+       D +I+        GD ++      +  
Sbjct: 113 SWVNN-------GTYFMLKVKGDSMINAGIYDKDTIIVEKTEYAKNGDIVVALINDDETT 165

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            K     +   I L   N  Y        +I  +  +
Sbjct: 166 VKRFFKEKN-RIRLQPENEAYSPIY--PENISILGVV 199


>gi|227504882|ref|ZP_03934931.1| LexA repressor [Corynebacterium striatum ATCC 6940]
 gi|227198573|gb|EEI78621.1| LexA repressor [Corynebacterium striatum ATCC 6940]
          Length = 241

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 58/220 (26%), Gaps = 11/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            ++I + I          PS   +   AGL  TS    +   +E +    R P+      
Sbjct: 21  QRRILDVIHDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEKGFLRRDPNKPRAVD 80

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    NE   +             +    +                G    G+       
Sbjct: 81  VRHLNNEEDTKKPGRKTGAKADKPEPGSSMTPEEASEVAYIPVV--GRIAAGSPITAEEN 138

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +   P         +    +    SM       GD +I+ S      G+ +       +
Sbjct: 139 IDTYFPMPNDVVGTGELYMLQVVGDSMRDAGILNGDWVIIRSQNVAEEGEFVAALLDGDE 198

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I L+  N  Y     +  D E + +++
Sbjct: 199 ATVKEFHRDSSG-IWLLPHNDAYSPI--KGDDAEIMGKVV 235


>gi|212638482|ref|YP_002315002.1| SOS-response transcriptional repressor LexA (HTH, RecA-mediated
           autopeptidase) [Anoxybacillus flavithermus WK1]
 gi|212559962|gb|ACJ33017.1| SOS-response transcriptional repressor LexA (HTH, RecA-mediated
           autopeptidase) [Anoxybacillus flavithermus WK1]
          Length = 195

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 66/200 (33%), Gaps = 17/200 (8%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           +T + LA+K  + PT+ +  +R         P  + I  +    +  I    +   +   
Sbjct: 1   MTQADLAKKLNVAPTAVSAWERNENR-----PLMDKIAIMSEMFDVPISYFFEDFKTIQE 55

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
             E+  +      +  +        G    G+        +        +    +    +
Sbjct: 56  VREEPAQ------YICTEFSRLPIIGSISCGDGVIAYEEIKGYEEVPSSWLNGGEYFFLE 109

Query: 142 TQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
            +  SM+      G +L++     V+ G+   +    G+ V K +      +I L S N 
Sbjct: 110 ARGDSMINAHITDGALLLIRRQNDVDNGEIAAVLID-GEAVLKRVYK-TEDTIILQSENP 167

Query: 201 CYPVDTV---EMSDIEWIAR 217
            Y    +   +M D+  I +
Sbjct: 168 MYKPIILKRNDMKDVRIIGK 187


>gi|239637028|ref|ZP_04678022.1| repressor LexA [Staphylococcus warneri L37603]
 gi|239597378|gb|EEQ79881.1| repressor LexA [Staphylococcus warneri L37603]
          Length = 207

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 59/227 (25%), Gaps = 34/227 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53
           M   +    +I++ I ++ +     PS   +    GL   ++ +       E     R P
Sbjct: 1   MRELTKRQSEIYDYIKQIVQSKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIKRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +I+                           +      P          +    N
Sbjct: 61  TKPRAIEIV------------------SEQLNDNISMEETIHVPVIGKVTAGIPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +PE  +  +      +          SM       GD +I+ S      GD ++
Sbjct: 103 IEEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIV 157

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       ++   +  + +++
Sbjct: 158 AMTEDDEATVKRFYKEKN-RYRLQPENSTMDPIYLDN--VIVVGKVI 201


>gi|329120981|ref|ZP_08249612.1| LexA repressor [Dialister micraerophilus DSM 19965]
 gi|327471143|gb|EGF16597.1| LexA repressor [Dialister micraerophilus DSM 19965]
          Length = 209

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 37/227 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWP 53
           M   +   + I + I +  E  N  P+   + +  GL  T + +       E     R P
Sbjct: 6   MRKLTSREQSILDFIRKKIEDSNFPPTVREICQAVGLKSTSTVHGYLTRLEELGVIKRNP 65

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           S+    +++        + +                       P          VF   +
Sbjct: 66  SSSRAIELIDHNESWKSKKMLPM--------------------PVVGSVRAGEPVFADEH 105

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +P      N              +  SM+     +GD LI++     N GD ++
Sbjct: 106 IETVFPLPAEMIGSN------GNCFILVVRGDSMINAGINEGDYLIVSEQNTANDGDIVV 159

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 D   K    +    + L   N  Y        ++    +++
Sbjct: 160 ALVDNEDATVKRFYKKTD-YVLLKPENDNYEPII--SRNVIIRGKVI 203


>gi|311113259|ref|YP_003984481.1| repressor LexA [Rothia dentocariosa ATCC 17931]
 gi|310944753|gb|ADP41047.1| repressor LexA [Rothia dentocariosa ATCC 17931]
          Length = 222

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 65/220 (29%), Gaps = 23/220 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPSTESIFK 60
            +KI +AI    E+    PS   +    GL   +S  ++  R    G   R P      +
Sbjct: 14  QQKILDAIRTEIEQKGYPPSMRQIGDIVGLASLSSVTHQLGRLEKMGYIRRDPKLPRAIE 73

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    +++    +PL+    +G             +  + + +
Sbjct: 74  ILDDLEHEGTSAHFPELPTFEVSDEDMVPVPLVGRIAAGGPIT------AEQSVEDVLSL 127

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P              +    + +  SM+      GD +++      + GD +       +
Sbjct: 128 PRQLVGS-------GKLFMLRVKGDSMIDAAICDGDWVVVREQHTADNGDIVAALLD-DE 179

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              KV   +      L+  N  Y            + +++
Sbjct: 180 ATVKVF-RQVDGHTWLLPRNSQYEPIL--GDRATVMGKVV 216


>gi|326445052|ref|ZP_08219786.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 56/214 (26%), Gaps = 24/214 (11%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I   I R   +    PS   + +  GL  TS    +   +E            K     +
Sbjct: 28  ILACIARSVSKRGYPPSMREIGQAVGLTSTSSVAHQLLALE-----------RKGALRRD 76

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +   LP        ++ +        P        + V       +T  +P     
Sbjct: 77  PHRPRAYCLPLRSPAGEYEQPENQNAATEVPLVGRIEAGAPVLAEQMIEDTYLLPRQLVG 136

Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                  + +    K    SM       GD++ +        GD +      G+   K  
Sbjct: 137 -------EGELFALKVTGESMIEAAICDGDVVTVRRQQVAQPGDIVAAMLD-GEATVKRF 188

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                    L++ N  +    +       + +++
Sbjct: 189 QRDAAGHAWLVAHNPRFQP--LAADHAVILGKVV 220


>gi|225418742|ref|ZP_03761931.1| hypothetical protein CLOSTASPAR_05966 [Clostridium asparagiforme
           DSM 15981]
 gi|225041731|gb|EEG51977.1| hypothetical protein CLOSTASPAR_05966 [Clostridium asparagiforme
           DSM 15981]
          Length = 205

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I E I     +    P+   +     L  TS   S    +E +    R P+     
Sbjct: 9   KQEEILEYIKETILKKGYPPAVREICEAVHLKSTSSVHSHLSTLEEKGFIRRDPTKPRTI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL  T     + +                       P          +    N  +   
Sbjct: 69  EILDDTFNFNRREMTN--------------------VPVVGAVAAGQPLLAEQNIEDYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P    P+             + +  SM+      GD +I+        GD ++      
Sbjct: 109 IPVELLPN-------ADTFMLRVKGDSMINAGILDGDQIIVEQTPSAQNGDIVVAL-LED 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N       V+   ++   +++
Sbjct: 161 SATVKRFYR-EDGHYRLQPENDYMDPIIVDH--VDIQGKVI 198


>gi|227356085|ref|ZP_03840476.1| phage repressor protein [Proteus mirabilis ATCC 29906]
 gi|227163862|gb|EEI48770.1| phage repressor protein [Proteus mirabilis ATCC 29906]
          Length = 245

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 12/220 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----EGRNRWPSTESIFKILA 63
           + + I     +  +  S  A    L+  S   S          + R  W       K   
Sbjct: 28  LGKRITEALAKQGIKVSAPAVWKWLNGESVPDSTNILALSQWLDVRAEWLEYGRGAKKND 87

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             +      ++   +       + +         +   G   +             +   
Sbjct: 88  GISVNEIMPVNDWDNSTPIERDEVEIPFYSTIELAAGFGSCTTDNQKVE------LLRFS 141

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           RS  N      +     K    SM P+     I+ +++         +    +   +  K
Sbjct: 142 RSTFNQYGVQPSDAVAFKVHGDSMSPVIPDSSIVTISTGHTKIIDGGIYAIQQGDLLRVK 201

Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
           +L       I + S N   YP +   + +++ + R+   S
Sbjct: 202 ILHRLPNNKIIIRSYNTIDYPDEESTLEEVKILGRVFNWS 241


>gi|148543909|ref|YP_001271279.1| LexA repressor [Lactobacillus reuteri DSM 20016]
 gi|184153305|ref|YP_001841646.1| LexA repressor [Lactobacillus reuteri JCM 1112]
 gi|227364819|ref|ZP_03848867.1| SOS-response transcriptional repressor, LexA [Lactobacillus reuteri
           MM2-3]
 gi|325682556|ref|ZP_08162073.1| transcriptional repressor LexA [Lactobacillus reuteri MM4-1A]
 gi|166990802|sp|A5VJB8|LEXA_LACRD RecName: Full=LexA repressor
 gi|229621227|sp|B2G6T4|LEXA_LACRJ RecName: Full=LexA repressor
 gi|148530943|gb|ABQ82942.1| SOS-response transcriptional repressor, LexA [Lactobacillus reuteri
           DSM 20016]
 gi|183224649|dbj|BAG25166.1| SOS-response transcriptional repressor [Lactobacillus reuteri JCM
           1112]
 gi|227070163|gb|EEI08538.1| SOS-response transcriptional repressor, LexA [Lactobacillus reuteri
           MM2-3]
 gi|324978395|gb|EGC15345.1| transcriptional repressor LexA [Lactobacillus reuteri MM4-1A]
          Length = 208

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 45/232 (19%)

Query: 1   MTSF-SHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGR 49
           M     +K+  +   I +  E H   P+   +    GL  TS      ++  ++  ++  
Sbjct: 1   MAKLAKNKQMAVLNYIHKQVEDHGYPPTVREICSAVGLSSTSTVHGHISRLIEQGFLQKD 60

Query: 50  NRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
              P   E   K L        Q            +                       +
Sbjct: 61  PSKPRALEITPKGLDILGVKPIQKEIPMLGVVTAGQP----------------------I 98

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
               N      +P     +N              + TSM+      GD +I+        
Sbjct: 99  LAVENATEFFPIPPSIQDNN-------DLFMLTIRGTSMIKAGIFNGDQVIVRKQSTAKN 151

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K     +     L   N       ++   ++ + +++
Sbjct: 152 GDIVIAMNDDNEATCKRFYKEK-TRFRLQPENDTMEPIFLDN--VKILGKVV 200


>gi|145632822|ref|ZP_01788555.1| putative prophage repressor CI [Haemophilus influenzae 3655]
 gi|145635978|ref|ZP_01791661.1| putative prophage repressor CI [Haemophilus influenzae PittAA]
 gi|229844113|ref|ZP_04464254.1| putative prophage repressor CI [Haemophilus influenzae 6P18H1]
 gi|144986478|gb|EDJ93044.1| putative prophage repressor CI [Haemophilus influenzae 3655]
 gi|145266765|gb|EDK06786.1| putative prophage repressor CI [Haemophilus influenzae PittAA]
 gi|229813107|gb|EEP48795.1| putative prophage repressor CI [Haemophilus influenzae 6P18H1]
          Length = 218

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58
           + E I    E+  ++   LA +                     ++       R P  E I
Sbjct: 4   LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             I  A N     L ++   D   +E KE         P  +G + D       + +  +
Sbjct: 59  SIISKALNI----LPEILAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
               I S               + +  SMLP + +GD+++++  I    G  +       
Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165

Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216
           +   K       +        +L+ LN  +P  +    +I  I 
Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209


>gi|70729495|ref|YP_259233.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343794|gb|AAY91400.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
           Pf-5]
          Length = 242

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 64/234 (27%), Gaps = 24/234 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA-TNETI 69
           + +        L  + LA +AGL  TS +  +R   +         S+  + +    E +
Sbjct: 5   DRLKTARRHAQLNQTELAERAGLTQTSISDLERGKSKATAFVAQIASVCGVSSMWLAEGV 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-------GGFFDSGVFPTGNKWNTVGVPE 122
            ++L    +    T+       +  +  +           F        G+    +   +
Sbjct: 65  GEMLKAADTASARTQPSVHLDDIETWDDATPLDDNEVYVPFLHEVELAAGSGRFVIEESD 124

Query: 123 IRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLI 173
                     ++                 SM+P+ R G  + +N             +  
Sbjct: 125 TARLRFFKKDLRQNGVQFNNAKCVSVSGNSMVPVLRDGATVGVNVGRNALKDVVDGEMYA 184

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD------TVEMSDIEWIARILWA 221
               G +  K +       + L S N     D       ++   I  +  + W 
Sbjct: 185 LNHNGQLRVKQVYRLPVG-LRLRSFNRDEHPDEDYSFAEIQEQQISILGHVFWW 237


>gi|309805037|ref|ZP_07699094.1| peptidase S24-like protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165696|gb|EFO67922.1| peptidase S24-like protein [Lactobacillus iners LactinV 09V1-c]
          Length = 230

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 19/231 (8%)

Query: 4   FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +K+I+   +     ++ +  + L    G    + +       +   R    E +    
Sbjct: 3   LGNKEIFSQNLKYYMYKYGVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60

Query: 63  AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGG----------FFDSGVF 109
                 + +       D           ++  +  +                  +  G  
Sbjct: 61  NIKKSDLVEKQTDKQIDILPVYNQLADIRKHKVYSYAQQQLDEQNSNLNEKRSIYLVGSS 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
             G   +   +       + I A    D     +  SM P      I+  +    +  G+
Sbjct: 121 AAGLPLDYGDLDAELIDLSNIPA--KADKAIHIKGDSMEPKISNNSIIFYHEQPTLEIGE 178

Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 179 IGIFEINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFTGDQVRILGKVV 229


>gi|306830136|ref|ZP_07463320.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC
           6249]
 gi|304427662|gb|EFM30758.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC
           6249]
          Length = 228

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-NRWPSTESIFKILAATNETI 69
           E +    +   LT   +A + G+   +++  +R   E    +    E+I K+       I
Sbjct: 5   EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSQEKVAQLENILKVAKGYFTQI 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122
             +        +  +K       L                     +  +          +
Sbjct: 65  EIVRLYNSLSKQGKDKVVLYARNLAKEEQTQKVMTMPERLYEYRVYERMSAGIGASVYDD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 RNFDTVYFNEELAHDFASWVAGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           K +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220


>gi|220936231|ref|YP_002515130.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997541|gb|ACL74143.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 197

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 59/223 (26%), Gaps = 37/223 (16%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57
           M +   +   + I R   RH   P+   +    G+    + ++  +  ++          
Sbjct: 1   MLTPQQRNTLDVIRRHLHRHGHAPTLTEIGEALGVRSKGAVHRLVQALVDK--------- 51

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                                 G  T +      L       +      G    G     
Sbjct: 52  ----------------------GFLTRESPGWRGLRPTGSDAAFSLPLVGRIAAGRPIEA 89

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           +  P   +     + +       +    SM+      GD +++  A     GD ++    
Sbjct: 90  I--PGEDTLDLADFLLGPGRYALRVVGESMVGAGILDGDTVVVQQADSARDGDIVVALID 147

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K +  R    ++L + N        + + +     ++
Sbjct: 148 DEEATLKRIRHRPDGQVELRAENPAMAPLVYDAARVRIQGVVV 190


>gi|303228886|ref|ZP_07315698.1| repressor LexA [Veillonella atypica ACS-134-V-Col7a]
 gi|303231423|ref|ZP_07318154.1| repressor LexA [Veillonella atypica ACS-049-V-Sch6]
 gi|302513860|gb|EFL55871.1| repressor LexA [Veillonella atypica ACS-049-V-Sch6]
 gi|302516450|gb|EFL58380.1| repressor LexA [Veillonella atypica ACS-134-V-Col7a]
          Length = 225

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 64/222 (28%), Gaps = 19/222 (8%)

Query: 5   SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I E I D +   +   T   +    GL  TS  +S    +E      R P+     
Sbjct: 11  KQRRILEFIRDSLHNEYRCPTVREICAYVGLSSTSTVQSHLNTLEKFGYIKRDPNKNRAI 70

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            IL             P         +        F  +G       G    G     V 
Sbjct: 71  TILDE---------GKPKVSVSKENNETTSSDNFEFLGAGLKQVPLIGTVQAGTPITAVE 121

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E            +     + Q  SM+ +   +GD+LI+      N GD ++ +    
Sbjct: 122 NLEATLTLPVQLTGDSDCFMLRVQGESMMNIGMYEGDMLIVRHQNTANNGDIVVARID-D 180

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
           +   K         I L   N  +    V+   IE   I  +
Sbjct: 181 EATVKRFYK-ENGHIRLQPENDNFDPIIVDDCHIEGLVIGLV 221


>gi|313891931|ref|ZP_07825532.1| repressor LexA [Dialister microaerophilus UPII 345-E]
 gi|313119574|gb|EFR42765.1| repressor LexA [Dialister microaerophilus UPII 345-E]
          Length = 209

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 37/227 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWP 53
           M   +   + I   I +  E  N  P+   + +  GL  T + +       E     R P
Sbjct: 6   MRKLTSREQSILNFIRKKIEDSNFPPTVREICQAVGLKSTSTVHGYLTRLEELGVIKRNP 65

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           S+    +++        + +                       P          VF   +
Sbjct: 66  SSSRAIELIDHNESWKSKKMLPM--------------------PVVGAVRAGEPVFADEH 105

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 +P      N              +  SM+     +GD LI++     N GD ++
Sbjct: 106 IETVFPLPAEMIGSN------GNCFILVVRGDSMINAGINEGDYLIVSEQNTANDGDIVV 159

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 D   K    +    + L   N  Y        ++    +++
Sbjct: 160 ALVDNEDATVKRFYKKTD-YVLLKPENDNYEPII--SRNVIIRGKVI 203


>gi|292671017|ref|ZP_06604443.1| LexA repressor [Selenomonas noxia ATCC 43541]
 gi|292647334|gb|EFF65306.1| LexA repressor [Selenomonas noxia ATCC 43541]
          Length = 214

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 55/222 (24%), Gaps = 34/222 (15%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58
           ++    +I + I          PS   +    GL   ++ ++                  
Sbjct: 17  STRRQSEILQYIKDFLIEKGYPPSVREIGTAVGLKSSSTVHRYL---------------- 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +L                D        + IP+               +    N  +  
Sbjct: 61  -AMLEENGAIRRDATKPRAIDIMGENPWGRTIPVPLV----GVVTAGEPILAEQNIEDVF 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P                   + Q  SM+ +    GD +++      N GD ++     
Sbjct: 116 SFPRGLIGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALVNG 169

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                K     +   I L   N          +D++ + +++
Sbjct: 170 ESATVKRFFREKN-CIRLQPENDSMEPFY--ETDVQVLGKVI 208


>gi|242242619|ref|ZP_04797064.1| LexA repressor [Staphylococcus epidermidis W23144]
 gi|242233755|gb|EES36067.1| LexA repressor [Staphylococcus epidermidis W23144]
 gi|319401371|gb|EFV89582.1| lexA repressor [Staphylococcus epidermidis FRI909]
          Length = 206

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 57/225 (25%), Gaps = 31/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +    +I++ I ++ +     PS   +    GL   ++ +                
Sbjct: 1   MRELTKRQSEIYDYIKKIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L                +  + +  E  +      P          +    N  
Sbjct: 50  ------LEEKGYIRRDPTKPRAIEIVSEQLDEVNVEETIHVPVIGKVTAGVPITAVENIE 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
               +PE  +  +      +          SM       GD +I+ S      GD ++  
Sbjct: 104 EYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 158

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K     +     L   N       ++   +  I +++
Sbjct: 159 TEDEEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VIVIGKVI 200


>gi|225374398|ref|ZP_03751619.1| hypothetical protein ROSEINA2194_00012 [Roseburia inulinivorans DSM
           16841]
 gi|225213636|gb|EEG95990.1| hypothetical protein ROSEINA2194_00012 [Roseburia inulinivorans DSM
           16841]
          Length = 231

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 24/233 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           K + + I +  + H L  S LA++       +   S +  +        R     ++ +I
Sbjct: 2   KDLGKTIAKYRKEHKLNQSQLAKELENYDIYVKQNSISAWELGTATPNARQFL--ALCEI 59

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-VFPTGNKWNTVGV 120
           L   +     +   P +  R   +      L Y     S G +    + P          
Sbjct: 60  LEIYDIYTDFIGQSPLNPFRNLNENGMNKVLEYISDLESTGNYKPAEIIPIHVIRERKVF 119

Query: 121 PEIRSPHNGIYAIQTQD-------------TRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
               S   G +    +                      SM P Y   D++ +     ++ 
Sbjct: 120 YNTVSAGTGSFLDGDEYEIFSSPDIPEAATFGVYVDGDSMEPKYHNKDLIWIEQTACLDN 179

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           G+  +     G+   K   + R  +  L+SLN  Y    V E S  +   R+L
Sbjct: 180 GEIGIFYLD-GNAYVKKFQNNRLGTY-LISLNKKYDPIPVTENSSFKIFGRVL 230


>gi|118578715|ref|YP_899965.1| putative phage repressor [Pelobacter propionicus DSM 2379]
 gi|118501425|gb|ABK97907.1| putative phage repressor [Pelobacter propionicus DSM 2379]
          Length = 235

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 65/217 (29%), Gaps = 7/217 (3%)

Query: 9   IWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I+++     L   + +A+    DP      K+ G     +        +       
Sbjct: 18  IESIIEKLKTALGLKNDTEVAKALESDPRLLGTWKKRGTVPYEKIIKL--CIRKNINLQW 75

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                  LP          E++  +               +  +    + +        +
Sbjct: 76  LFSDGSSLPTICRDNGLVSEEDGYIKVPRYEVRASAGGGAIIHSEQIVDHLYFKAEWVKN 135

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +   +        Q  SM P    GD++++++         + +      ++ K L  
Sbjct: 136 -ALGIPRDFLVLISVQGDSMEPTLSNGDLILVDTRTSRVEDGAIYVVQYGDALLVKRLQK 194

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
           +   S+ + S N  Y  + +   D   +  + R++WA
Sbjct: 195 KYDGSVVIRSDNPLYEAEIIHGEDALNLIIVGRVVWA 231


>gi|260437618|ref|ZP_05791434.1| toxin-antitoxin system, antitoxin component, Xre family
           [Butyrivibrio crossotus DSM 2876]
 gi|292809970|gb|EFF69175.1| toxin-antitoxin system, antitoxin component, Xre family
           [Butyrivibrio crossotus DSM 2876]
          Length = 231

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 24/233 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           K + + I +  + H L  S LA++       +   S +  +        R     ++ +I
Sbjct: 2   KDLGKTIAKYRKEHKLNQSQLAKELENYDIYVKQNSISAWELGTATPNARQFL--ALCEI 59

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-VFPTGNKWNTVGV 120
           L   +     +   P +  R   +  +   L Y     S G +    + P          
Sbjct: 60  LEIYDIYTEFVGQSPLNPFRNLNENGRNKVLEYISDLESTGNYKPAEIIPIHVIRERKVF 119

Query: 121 PEIRSPHNGIYAIQTQD-------------TRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
               S   G +    +                      SM P Y   D++ +     ++ 
Sbjct: 120 YNTVSAGTGSFLDGDEYEIFSSPDIPEAATFGVYVDGDSMEPKYHNKDLIWIEQTACLDD 179

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           G+  +     G+   K   + R  +  L+SLN  Y    V E S  +   R+L
Sbjct: 180 GEIGIFYLD-GNAYVKKFQNNRLGTY-LISLNKKYDPIPVTENSSFKIFGRVL 230


>gi|161504556|ref|YP_001571668.1| hypothetical protein SARI_02669 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865903|gb|ABX22526.1| hypothetical protein SARI_02669 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 236

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 66/211 (31%), Gaps = 14/211 (6%)

Query: 6   HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            ++  + + +  +   L        +AR   +     +K            P  E +  +
Sbjct: 8   RQEFAQRLAQACKEAGLDEHGRGIAIARALDVSSKGVSKWFNAES-----LPRQEKMNAL 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                  +  L         TT+ +      L F      G               + + 
Sbjct: 63  ANFLKVDVVWLQHGSVRQSTTTDPQS-----LTFVGQLRKGLVRVVGEAILGVDGAIEMT 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E R     IY+   +    + +  SM P  + G+ +++    +V  GD + ++   G  +
Sbjct: 118 EERDGWLKIYSDDPEAFGLRVKGDSMWPRIKSGEYVLIEPNTKVCPGDEVFVRTIEGHNM 177

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
            KVL   R       S+N  +   T+   ++
Sbjct: 178 IKVLGYDRDGEYQFTSINQDHRPITLPYYEV 208


>gi|306824522|ref|ZP_07457868.1| hypothetical transcriptional regulator [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304433309|gb|EFM36279.1| hypothetical transcriptional regulator [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 228

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAATNETI 69
           E +    +   LT   +A + G+   +++  +R   E  + +    E I K+       I
Sbjct: 5   EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLEKILKVAKGYFTQI 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122
             +        +  +K       L                     +  +          +
Sbjct: 65  EIVRLYNSLSKQGKDKVVLYARNLAQEEQAQKVMDMPKRLYEYRVYERMSAGIGASVYDD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 RNFDTVYFNEELAHDFASWVAGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           K +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 KRVYREEDG-LRLVSINPKYKDIFISYEEDPRIVGIIV 220


>gi|82751478|ref|YP_417219.1| transcriptional repressor [Staphylococcus aureus RF122]
 gi|82657009|emb|CAI81446.1| probable transcriptional repressor [Staphylococcus aureus RF122]
          Length = 222

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 71/211 (33%), Gaps = 19/211 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  + E+ + +    + + GL  T+  +  +R     +      E++ KI    N     
Sbjct: 21  LKYLMEKKSGSVKAFSEEIGLAYTTVRSILERGVFNAK-----VENVIKICNGLNIRPED 75

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           ++D+  +     + +   +  +      S G          N  + +             
Sbjct: 76  IMDIKQTKPIEPQIETLPVKKIPVVSKISAGLPIYC---EENLVDYIYF------SRDKL 126

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
             + ++   K    SM  L+ +GD++++     V  G   ++     +   K +    G 
Sbjct: 127 NDEKEEFGLKVSGDSMNKLFDEGDVVVVEKDSIVENGQLGVVMINGYNGTVKRI-RYNGD 185

Query: 192 SIDLMSL--NCCYPVDTVEMSD-IEWIARIL 219
            I L+    N  +        D ++ + R++
Sbjct: 186 QIILIPESNNPSHYPQVYGKDDEVKIVGRVV 216


>gi|332522412|ref|ZP_08398664.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313676|gb|EGJ26661.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 232

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 24/226 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  +      + S LA    ++  S+NK +        +  S  ++ +IL       
Sbjct: 4   GSRLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLS--ALARILDVPTTYF 61

Query: 70  CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115
                +  +  + + +             + +       P  +           G     
Sbjct: 62  ESEYKIVNTYLQLSTENQGKVDEYAEGLLQAQESHDNVIPLFAVEVLSDVSLSAGFGESL 121

Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                   + +           D     +  SM P+Y  G++ ++ ++     G  +   
Sbjct: 122 FEEYETETVYAEEEQY----GYDIAAWIKGDSMEPIYLDGEVALIRASGFDYDG-AVYAL 176

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                +  K L         ++SLN  YP   +   D    +  ++
Sbjct: 177 SWNDSVYIKKLYREENG-FRMVSLNDNYPDKWIPYEDNPRIVGLVV 221


>gi|295097139|emb|CBK86229.1| Predicted transcriptional regulator [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 230

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 50/219 (22%), Gaps = 21/219 (9%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +        LT   L    G+   +  K +            T  + +I  A    +  
Sbjct: 8   RLKEARAARGLTQKALGDLVGVSQAAIQKIETGKAS------QTTKLVEIANALGV-MPD 60

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV----------GVP 121
            L           K+     L                   G     +             
Sbjct: 61  WLSSGEGAMLNDGKQSGAALLTNAASDVFRVDVLDLTVSAGPGSFMISEFVEVLHAIEFT 120

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              +        Q           SM P  + GD L  + +++    D +          
Sbjct: 121 NEHARALFGNRAQHDVKVMTVDGDSMCPTIQSGDRLFFDVSVRNFKVDGVYAFVFGQHFH 180

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIAR 217
            K L  + G  + ++S N  Y    V       +  + +
Sbjct: 181 VKRLQMQ-GLQLAVLSDNPAYKDWYVTEENQDQLYIMGK 218


>gi|330959920|gb|EGH60180.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 243

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K                         +      ++     + G   + +         
Sbjct: 65  GPKHPNEPANENTGGDTRMIIQQTRNVLRGDVEIQIFTEVESTHGVGKTVLAEAPG--QR 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQTMGI--DPKNCICVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSAEDIDREKIRILGWIFWWS 231


>gi|197285586|ref|YP_002151458.1| phage repressor protein [Proteus mirabilis HI4320]
 gi|194683073|emb|CAR43591.1| putative phage repressor protein [Proteus mirabilis HI4320]
          Length = 245

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 12/220 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----EGRNRWPSTESIFKILA 63
           + + I     +  +  S  A    L+  S   S          + R  W       K   
Sbjct: 28  LGKRITEALAKQGIKVSAPAVWKWLNGESVPDSTNILALSQWLDVRAEWLEYGRGAKKND 87

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             +      ++   +       + +         +   G   +             +   
Sbjct: 88  GISVNEIMPVNDWDNSTPIERDEVEIPFYSTIELAAGFGSCTTDNQKVE------LLRFS 141

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           RS  N      +     K    SM P+     I+ +++         +    +   +  K
Sbjct: 142 RSTFNQYGVQPSDAVAFKVHGDSMSPVIPDSSIVTISTGHTKIIDGGIYAIQQGDLLRVK 201

Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
           +L       I + S N   YP +   + +++ + R+   S
Sbjct: 202 ILHRLPNNKIIIRSYNTIDYPDEESTLEEVKILGRVFNWS 241


>gi|322388880|ref|ZP_08062472.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC
           700779]
 gi|321140263|gb|EFX35776.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC
           700779]
          Length = 228

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 59/223 (26%), Gaps = 21/223 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   LT   +A + G+   +++  +R   E     PS E + ++         
Sbjct: 5   EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGVKE-----PSKEKVKQLEEILKVPKG 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------------FFDSGVFPTGNKWNT 117
               +       +   + +  ++ +  + +               +              
Sbjct: 60  YFTQIEIVRLYNSLSNKGKEKVVVYARNLAQEEQAKKVTAISEKLYEYHVYERMSAGIGA 119

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
               +              D        SM P Y+ G + ++        G  +      
Sbjct: 120 SVYDDRNFDTVYFNEELAHDFASWVSGDSMEPRYQNGSVALIRETGFDYDG-AVYAVVCN 178

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
                K +       + L+S+N  Y    +    D   +  I+
Sbjct: 179 NQTYIKRVYREDDG-LRLVSINPKYKDIHISYEEDPRIVGIIV 220


>gi|260583034|ref|ZP_05850816.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae NT127]
 gi|260093885|gb|EEW77791.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae NT127]
          Length = 218

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58
           + E I    E+  ++   LA +                     ++       R P  E I
Sbjct: 4   LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             I  A N     L ++   D   +E KE         P  +G + D       + +  +
Sbjct: 59  SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
               I S               + +  SMLP + +GD+++++  I    G  +       
Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165

Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216
           +   K       +        +L+ LN  +P  +    +I  I 
Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209


>gi|269797995|ref|YP_003311895.1| SOS-response transcriptional repressor, LexA [Veillonella parvula
           DSM 2008]
 gi|269094624|gb|ACZ24615.1| SOS-response transcriptional repressor, LexA [Veillonella parvula
           DSM 2008]
          Length = 223

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%)

Query: 5   SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I + I D +   +   T   +    GL  TS  +S    +E      R P+     
Sbjct: 11  KQRRILDFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +L  T  +I    +   S             +              G    G     V 
Sbjct: 71  TVLEDTKPSISVTGNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E            +     + Q  SM+ +   +GD+LI+      N GD ++ +    
Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
           +   K         I L   N  +    V+   IE   I  +
Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219


>gi|172044068|sp|A0JUZ2|LEXA_ARTS2 RecName: Full=LexA repressor
          Length = 249

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 55/220 (25%), Gaps = 10/220 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL---DPTSFNKSKRFGIEGRNRWPSTESIFK 60
            KKI E I R    +   PS   +    GL      +   S+   +    R P      +
Sbjct: 28  QKKILETIQRSVNDNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRPRAME 87

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L                                   + +      G    G       V
Sbjct: 88  VLMPLTLDEGTAKISGVEKPARLRTIGGLAVSELATATDTAMVPLVGRIAAGGPILADQV 147

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E   P         +    K    SM+      GD +++        GD +       +
Sbjct: 148 VEDVMPLPRQLVGHGELFMLKVTGDSMIDAAICDGDWVVVRRQSDAVNGDIVAALLD-DE 206

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +R     L+  N  Y     + +    + +++
Sbjct: 207 ATVKTF-RQRDGHTWLLPQNTQYEPILGDHA--NIMGKVV 243


>gi|254393262|ref|ZP_05008414.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
 gi|197706901|gb|EDY52713.1| LexA repressor [Streptomyces clavuligerus ATCC 27064]
          Length = 240

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 56/214 (26%), Gaps = 24/214 (11%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I   I R   +    PS   + +  GL  TS    +   +E            K     +
Sbjct: 42  ILACIARSVSKRGYPPSMREIGQAVGLTSTSSVAHQLLALE-----------RKGALRRD 90

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +   LP        ++ +        P        + V       +T  +P     
Sbjct: 91  PHRPRAYCLPLRSPAGEYEQPENQNAATEVPLVGRIEAGAPVLAEQMIEDTYLLPRQLVG 150

Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                  + +    K    SM       GD++ +        GD +      G+   K  
Sbjct: 151 -------EGELFALKVTGESMIEAAICDGDVVTVRRQQVAQPGDIVAAMLD-GEATVKRF 202

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                    L++ N  +    +       + +++
Sbjct: 203 QRDAAGHAWLVAHNPRFQP--LAADHAVILGKVV 234


>gi|327439614|dbj|BAK15979.1| SOS-response transcriptional repressors [Solibacillus silvestris
           StLB046]
          Length = 207

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 56/220 (25%), Gaps = 34/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPSTESIFK 60
            + I   I          PS   +    GL   ++ +    R   +G   R P+     +
Sbjct: 9   QQAILTFIKEEVRSKGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIRRDPTKPRAIE 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL      I +                     +   P          +    +      +
Sbjct: 69  ILDQEEMNITKQG-------------------VIHVPLIGKVTAGLPISAIEDIQEYFPL 109

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+           + +    +    SM       GD +I+      N G+ ++      +
Sbjct: 110 PDAYGSP------EEELFMLEIMGESMIEAGILNGDYVIVKKTSTANNGEIVVAMTEDDE 163

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +     L   N       V  + +  + +++
Sbjct: 164 ATVKRFYKEK-THFRLQPENSSMEPIIV--NQVSILGKVV 200


>gi|323441550|gb|EGA99200.1| hypothetical protein SAO46_2483 [Staphylococcus aureus O46]
          Length = 237

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 63/243 (25%), Gaps = 31/243 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    +  I + I +     N++   LA    + P++ +             PS   I +
Sbjct: 1   MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSN-----PSHGVIQR 55

Query: 61  ILA----------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           I             T +    +  +        ++              S G     +  
Sbjct: 56  IADVFEVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLDEQNSKGDNVVDINS 115

Query: 111 -------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                                   E          +   D   K    SM P+++ G+I+
Sbjct: 116 YKQDKTPVNVNGCVSAGVGERLHDETLFTEMVKAPVPPHDLALKVNGDSMEPMFKDGEII 175

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIA 216
            +     +  G   +      +   K +       + L+SLN  Y          +  + 
Sbjct: 176 FVEKTHNIKNGQIGIFII-EEEAYVKKVF-VEDDRLTLVSLNKEYRDLHFYRNESVRLVG 233

Query: 217 RIL 219
           +++
Sbjct: 234 KVI 236


>gi|302343044|ref|YP_003807573.1| phage repressor [Desulfarculus baarsii DSM 2075]
 gi|301639657|gb|ADK84979.1| putative phage repressor [Desulfarculus baarsii DSM 2075]
          Length = 249

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 63/237 (26%), Gaps = 24/237 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M      +I + +    E         A    +  ++ ++ +        R PS E +++
Sbjct: 14  MLPL-PPEIGDRVKAARESFGYNQKDFAELLAIGQSTLSRIENGE-----RPPSPELLYR 67

Query: 61  ILAAT----------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           +                  C + D          + +                   G   
Sbjct: 68  LALKFPSVDLRELLVGYPSCHICDNEPQLVINVLENDLATGQDIAAADYLAVPLVDGKIA 127

Query: 111 TGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
            G        V  +          +      K    SM P    G  ++++       G+
Sbjct: 128 AGLGSVVWEDVQSVVLACRAELGNKRHLVSVKVCGDSMSPTVPDGATVVIDRDDWRPSGN 187

Query: 170 ---RLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIE--WIARILW 220
                 I+ + G    K L       + ++S N   YP      +D+    I R++W
Sbjct: 188 RRHIWAIRDQWGGAAIKRLFKVDDG-LLVISDNFDQYPPQPAWTADLRKLVIGRVVW 243


>gi|148549337|ref|YP_001269439.1| putative phage repressor [Pseudomonas putida F1]
 gi|148513395|gb|ABQ80255.1| putative phage repressor [Pseudomonas putida F1]
          Length = 273

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 72/266 (27%), Gaps = 58/266 (21%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW------------------ 52
           + +    +  NL+ + L++ +G+   + +         + +                   
Sbjct: 5   DRVIARMKELNLSSTDLSKLSGVSKATVSFWINGTNGAKGKNLLALAKALECSAEWLSDG 64

Query: 53  ---PSTES---------------------------------IFKILAATNETICQLLDLP 76
              P+ E+                                 +     A +    Q     
Sbjct: 65  TGQPTDENSPSVAASSTAELVAQMLASKAGKNLSEKAREVMLAAAAEADSPDRGQEYLPS 124

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
                   ++E  IP      +   G   +    +    N V   EI       Y   + 
Sbjct: 125 AYSSLKPNQEEILIPQYDVRAAMGHGQVPADY--SEAVRNLVVREEILREKGVTYTSPSA 182

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                    SM       D++I++  I    G+ + +     ++  K ++        L+
Sbjct: 183 LAMITGWGQSMEGTINDKDLVIVDRGISEFIGEGIYVITWHQELYIKRMMRLDEDHFRLI 242

Query: 197 SLNCCYPVDTVEMSDIEWIARI--LW 220
           S N  Y   T  + D+   A++  +W
Sbjct: 243 SDNQHYENQTARIDDVTVHAKVLLIW 268


>gi|332653673|ref|ZP_08419417.1| repressor LexA [Ruminococcaceae bacterium D16]
 gi|332516759|gb|EGJ46364.1| repressor LexA [Ruminococcaceae bacterium D16]
          Length = 205

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 67/225 (29%), Gaps = 32/225 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M + +   +KI++ I      H   PS   +    GL  P++ +   +            
Sbjct: 1   MKTLTPKQQKIYDYILDFTAEHGYPPSVREIGAAVGLKSPSTVHFHLKG----------L 50

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E    I+ A  +T    L          E       +             S +       
Sbjct: 51  EEAGVIVKAEGKTRAISLPGVSPRPVAEETDPHANQIPVV----GNVAAGSPILAEECIE 106

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +              +  +    + +  SML      GD+++++   +   G  ++  
Sbjct: 107 DYLTFDTEG--------LSGEHFALRVRGESMLGAGILPGDLVVVHRQSEAQSGQIVVAL 158

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K L  R    + LM  N  Y     + +  + + +++
Sbjct: 159 F-EDEATVKTLRRR-DGKVWLMPANDEYQPI--DGTKAQILGQVV 199


>gi|293376443|ref|ZP_06622675.1| repressor LexA [Turicibacter sanguinis PC909]
 gi|325845049|ref|ZP_08168365.1| repressor LexA [Turicibacter sp. HGF1]
 gi|292644952|gb|EFF63030.1| repressor LexA [Turicibacter sanguinis PC909]
 gi|325488925|gb|EGC91318.1| repressor LexA [Turicibacter sp. HGF1]
          Length = 215

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 65/226 (28%), Gaps = 25/226 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54
           M   +   + I + I    ++    PS   +    GL  T+   N+  +   +G  R   
Sbjct: 1   MKPITKRQQAILDFIKAEIDKRGYPPSVREIGIAVGLSSTASVHNQLNQLEKKGFIRKDK 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                    +T   I  L +   S     + K  E   +   P          +    N 
Sbjct: 61  ---------STTRGIVILANETESKAAKNDSKIIEFKSVVNVPVIGKVTAGMPIEAIENP 111

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            +   +P    P N                 SM+      GD +I+      + GD ++ 
Sbjct: 112 DDFFPLPTHLIPSN------QTVFMLNVHGDSMINAGIHDGDQIIVQQQQDAHNGDIVVA 165

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                ++  K         I L   N          +D+  + +++
Sbjct: 166 MLDDHEVTVKRFFKES-GHIRLQPENDLLEPII--ANDVYIVGKVI 208


>gi|145632034|ref|ZP_01787780.1| putative prophage repressor CI [Haemophilus influenzae R3021]
 gi|144982305|gb|EDJ89901.1| putative prophage repressor CI [Haemophilus influenzae R3021]
          Length = 218

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 34/224 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58
           + E I    E+  ++   LA +                     ++       R P  E I
Sbjct: 4   LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             I  A N     L ++   D   +E KE         P  +G + D       + +  +
Sbjct: 59  SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
               I S               + +  SMLP + +GD+++++  I    G  +       
Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165

Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216
           +   K       +        +L+ LN  +P  +    +I  I 
Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 209


>gi|13431613|sp|O86948|LEXA_THENE RecName: Full=LexA repressor
 gi|3282090|emb|CAA07513.1| LexA repressor [Thermotoga neapolitana]
          Length = 197

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 38/224 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + K+  +   I+   E++   PS   +AR+  + P       R             
Sbjct: 1   MKDLTAKQRSVLIFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                    +    +                    +    P                  +
Sbjct: 43  -------QLHLVALEKKGYIERKNGKPRAMRVTKSVKNRVPLIGEIRAGEKKEAIEYLED 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            + VP              +    + +  SM       GD++++        GD +    
Sbjct: 96  YIEVPGSFLSSGY------EHFLLRVKGESMIEEHICDGDLVLIRRQDWAQNGDIV-AAM 148

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K    +RG  ++L   N            ++ + +++
Sbjct: 149 VEGEVTLKKFF-QRGEMVELRPANKEMSPMFFRADRVKILGKVV 191


>gi|295425189|ref|ZP_06817892.1| repressor LexA [Lactobacillus amylolyticus DSM 11664]
 gi|295064965|gb|EFG55870.1| repressor LexA [Lactobacillus amylolyticus DSM 11664]
          Length = 207

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 58/223 (26%), Gaps = 39/223 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES 57
              +I + I    E     P+   +     L  TS      ++ +R G+           
Sbjct: 8   KQLEILQYIYDTVEDRGFPPTVREICSAVNLSSTSTVHGHLSRLERKGL----------- 56

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + K                    +      KEIP++    +G             +  + 
Sbjct: 57  LIKDATKPRAIEITKKGREELGIKP-----KEIPVVGVVTAGQPI------LAVEDIDDY 105

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P          A        K    SM+      GD +I+      + G+ ++    
Sbjct: 106 FPLPPDL------KADAGDLFMLKVHGESMINAGILNGDNVIVRKQSSASNGEIVVAMTE 159

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K     +     L   N       +    +  + +++
Sbjct: 160 DNEATVKRFYKEK-GHYRLQPENDTMAPIILSK--VSILGKVV 199


>gi|273809592|ref|YP_003344830.1| cI repressor protein [Aggregatibacter phage S1249]
 gi|261410499|gb|ACX80330.1| cI repressor protein [Aggregatibacter phage S1249]
          Length = 219

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 13/212 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +      LT   LA K  +   + +  +          PS  +I ++       +   
Sbjct: 10  VKKARNAAGLTQEALADKLNMTKANVSAMENGRTT-----PSFINILEMATLAGIPLP-H 63

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           ++       ++ +KE  I +  +      G    G     N    +     +    GI+ 
Sbjct: 64  VEDNELTELSSAQKEDTIIIPEYQARAECGQGFDGNDDVANIAGGLPFSRKQLASLGIH- 122

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            +           SM P    G  ++L+ S      G    I       V K L     R
Sbjct: 123 -EKDACIIYAMGDSMSPTIENGATVMLDLSQTTPIEGAVFAIIRTGNGTVIKRLRRGADR 181

Query: 192 SIDLMSLN---CCYPVDTVEMSDIEWIARILW 220
           +    S N     YP       +   I R++W
Sbjct: 182 TWLYSSDNVDKNKYPDL-FSFEEDRIIGRVVW 212


>gi|306827184|ref|ZP_07460474.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC
           10782]
 gi|304430640|gb|EFM33659.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC
           10782]
          Length = 245

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 65/243 (26%), Gaps = 39/243 (16%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  +I  + +   +T   LA+  G    + +  +        R      I K   A    
Sbjct: 4   LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGN-----RQLDEVDIRKYAKALKIE 58

Query: 69  ICQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
             QL D   S                     +           +            N  +
Sbjct: 59  PQQLFDYSSSPTNPQVELIPSTLQKINSTSSQLEHSRQIIVLDTAETLLEQQKEIKNNED 118

Query: 117 TVGVPEIRSPHNGIYAIQ-------------------TQDTRHKTQDTSMLPLYRKGDIL 157
           T+      + ++   +                       D        SM P Y  GD +
Sbjct: 119 TIAELFSYNYYDHAASAGTGQYLNDVQVEKIELPVDYDADFVIPVYGDSMEPKYHSGDYV 178

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIA 216
            +  ++++  GD  +     GD   K L+     +  L SLN  Y    ++   D   I 
Sbjct: 179 FVKLSVELTDGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNSKYEDIPIDRDSDFRIIG 236

Query: 217 RIL 219
            ++
Sbjct: 237 EVM 239


>gi|289706436|ref|ZP_06502794.1| repressor LexA [Micrococcus luteus SK58]
 gi|289556931|gb|EFD50264.1| repressor LexA [Micrococcus luteus SK58]
          Length = 238

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 59/226 (26%), Gaps = 23/226 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--RWPSTE 56
            ++I + I      H   PS   +   AGL   S       + +R G   R+  R  + E
Sbjct: 18  QRRIVQTIRDAIADHGYPPSMREIGDAAGLASLSSVTHQLGRLERHGYIRRDPGRPRALE 77

Query: 57  SIFKILAAT--NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            +  +                             +       P          V      
Sbjct: 78  VLRDVDGTPLGEAASPAAAPSSQVSAIPAWHTGADGADSVPVPWVGRIAAGGPVLAEQQV 137

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            + + +P   +        + +    +    SM+      GD +++        GD +  
Sbjct: 138 EDVMAIPRRLTG-------EGELFMLRVTGDSMVDAAICDGDWVVVRRQETAENGDIVAA 190

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K    R      L+  N  Y     + +    + R++
Sbjct: 191 LLD-DEATVKTFRRR-DGHTWLLPQNTAYEPILGDHA--TVMGRVV 232


>gi|213031120|emb|CAR31457.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 227

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 20/220 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R  E   L+ S LA   G+   S+   +    +     P+  ++ K+    N  +   
Sbjct: 7   LKRKRESQGLSQSQLASSLGISRASYFNWESGKTK-----PNQNNLSKLSEILNVDLRYF 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                      +  E+         +      ++ V      +      ++ +     Y 
Sbjct: 62  ESEYEIVEIYLKLTERNQEATLHYATELLNKQNAKVVDIPQLFAYKVYEKLSAGTGTAYF 121

Query: 133 IQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                           D        SM P Y  G + ++        G  +      G  
Sbjct: 122 DDGNYDTVYFDHHFDYDFASWVFGNSMEPTYENGSVALIKQTGFDYDG-AIYAIDWDGQT 180

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             K +       + L+SLN  Y        +    I +I+
Sbjct: 181 YIKKVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 219


>gi|330685320|gb|EGG96980.1| repressor LexA [Staphylococcus epidermidis VCU121]
          Length = 207

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 59/227 (25%), Gaps = 34/227 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53
           M   +    +I++ I ++ +     PS   +    GL   ++ +       E     R P
Sbjct: 1   MRELTKRQSEIYDYIKQIVQSKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIKRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +I+                           +      P          +    N
Sbjct: 61  TKPRAIEIV------------------SEQLNDNISMEETIHVPVIGKVTAGIPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +PE  +  +      +          SM       GD +I+ S      GD ++
Sbjct: 103 IEEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIV 157

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       +   ++  + +++
Sbjct: 158 AMTEDDEATVKRFYKEKN-RYRLQPENSTMDPIYL--ENVIVVGKVI 201


>gi|116620617|ref|YP_822773.1| LexA repressor [Candidatus Solibacter usitatus Ellin6076]
 gi|116223779|gb|ABJ82488.1| SOS-response transcriptional repressor, LexA [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 207

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 58/215 (26%), Gaps = 26/215 (12%)

Query: 6   HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            K++ + I    + +    +   +AR   L                    S  ++ K ++
Sbjct: 7   QKQVLDFIGNFVDENGYCPSYEEIARGLELA-------------------SLATVHKHIS 47

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                         S       K  +      P          G    G     V   E+
Sbjct: 48  VLEAKSYLKRGFNQSRSLELTPKYVQEQRRTRPAIAEIPML--GRIAAGLPVEAVEQREV 105

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            +  +  +A        + +  SM+      GD+++L    Q   GD ++      D   
Sbjct: 106 LNFAD--FAGDGNTFALEVRGNSMIDDHICDGDVILLERVTQARDGDIVVALVAGSDTTL 163

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           K        +I L   N       V   D++   R
Sbjct: 164 KRFYRESADTIRLQPANAALKPILVPARDVQIQGR 198


>gi|289624318|ref|ZP_06457272.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647701|ref|ZP_06479044.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330865945|gb|EGH00654.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 243

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y     + G   + +         
Sbjct: 65  GSKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRMPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231


>gi|307729525|ref|YP_003906749.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1003]
 gi|307584060|gb|ADN57458.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1003]
          Length = 220

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 19/213 (8%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSA-------NSAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I              +   +    L  P          G    G+   
Sbjct: 54  GVIELAAGASRGI-----RLVPPPEFGQDGGQHQFTLPHPALMQLSLPLVGRVAAGSPIL 108

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 109 AQEHIAQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKRSEAKDGQIIIAR- 167

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
              D+  K L  R    I+L++ N  Y    VE
Sbjct: 168 LGDDVTVKRLKRRPNG-IELIAENPDYENIFVE 199


>gi|66395466|ref|YP_239823.1| ORF016 [Staphylococcus phage 2638A]
 gi|62635893|gb|AAX91004.1| ORF016 [Staphylococcus phage 2638A]
          Length = 206

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 68/212 (32%), Gaps = 18/212 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +  + +++++    LA+K G    +S ++ ++     + +  S   + ++   +   +
Sbjct: 4   KNLKYLRKKYDMEQIDLAKKLGRKSASSISEWEKGKYTPKMKTLS--ELARLFNVSINDL 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +           T        +                +   N      +P   +    
Sbjct: 62  MEKDLSNTKPQIDTLPVTAIPVVAKISAGLPI-------YTEENIIEYTYIPSQMTKGG- 113

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +    K    SM   +R+GD++++     V  G   ++     +   K +    
Sbjct: 114 -----KELFGLKVSGDSMDKEFREGDVVVVEKDSVVENGQIGVVNVNGYNATVKRIRYNE 168

Query: 190 GRSIDL-MSLNCCYPVDTVEMSD-IEWIARIL 219
            + I L  S N  +        D I+ + +++
Sbjct: 169 DKIILLPESNNSDHLPQVYTNDDEIKVVGKVV 200


>gi|322617194|gb|EFY14100.1| hypothetical protein SEEM315_09290 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322624873|gb|EFY21702.1| hypothetical protein SEEM973_01827 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322634603|gb|EFY31336.1| hypothetical protein SEEM201_20181 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639314|gb|EFY36006.1| hypothetical protein SEEM202_09469 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322646169|gb|EFY42684.1| hypothetical protein SEEM054_21956 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322683449|gb|EFY79463.1| hypothetical protein SEEM180_09486 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|323224557|gb|EGA08838.1| hypothetical protein SEEM0055_08821 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323258807|gb|EGA42463.1| hypothetical protein SEEM8283_10719 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 208

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 18/211 (8%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            ++  LT   LA   G    +             R PS E I  I+         L    
Sbjct: 1   MKQIGLTQDKLAEALGKTQGAIGHWLNG-----RREPSIEDIAAIMKQLGLKELVLSSDG 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAI 133
             D   +       P  +        F        GN    +    + EI          
Sbjct: 56  MVDYPDSNLNNVSSPRPHTE---IRRFPLISWVSAGNWCEAIEPYQLREIEVWPETTAHA 112

Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISR 188
             +      +  SM         +G  ++++ AI+   G  ++       +   K  I  
Sbjct: 113 SERSFWLTVRGDSMTSPTGLSIPEGMQILVDPAIEPTNGRLVVAKLESENEATFKKYIVD 172

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   L  LN  Y +  +  +    I  ++
Sbjct: 173 AGQKY-LKPLNPSYHMIPINGN-CRIIGVVI 201


>gi|268679524|ref|YP_003303955.1| peptidase S24/S26A/S26B, conserved region [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617555|gb|ACZ11920.1| Peptidase S24/S26A/S26B, conserved region [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 219

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 64/213 (30%), Gaps = 9/213 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +KI + +        +    +A   G++  +    K      R + P  E +        
Sbjct: 9   QKIKDILSEELGERKVFDKDVAEALGINQLTLATMKN-----RAKLPYKEILEFCAKRKI 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                L D      +    K   +       + +GG    G      +   + + E    
Sbjct: 64  SINWLLFDQFVESLQAQTDKFARVHYFRDIYASAGG----GALNEEEEGEMMYLDEEIVQ 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             G   +            SM P    GD++ ++          + +      +  K L 
Sbjct: 120 KLGGLGMIKHIQAINVLGDSMEPTLFSGDVVFIHKEYTNARKAGIYVVSTPAGLFIKRLH 179

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                ++ L+S N  Y  + ++  D+  + +++
Sbjct: 180 VHANGTVALVSDNEAYAPEVMQAEDVNVLGKVV 212


>gi|116494275|ref|YP_806009.1| LexA repressor [Lactobacillus casei ATCC 334]
 gi|191637610|ref|YP_001986776.1| LexA repressor [Lactobacillus casei BL23]
 gi|227534426|ref|ZP_03964475.1| repressor lexA [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239629659|ref|ZP_04672690.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065783|ref|YP_003787806.1| XRE family transcriptional regulator [Lactobacillus casei str.
           Zhang]
 gi|122264295|sp|Q03B55|LEXA_LACC3 RecName: Full=LexA repressor
 gi|229621217|sp|B3WC17|LEXA_LACCB RecName: Full=LexA repressor
 gi|116104425|gb|ABJ69567.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC
           334]
 gi|190711912|emb|CAQ65918.1| LexA repressor [Lactobacillus casei BL23]
 gi|227187933|gb|EEI68000.1| repressor lexA [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239528345|gb|EEQ67346.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438190|gb|ADK17956.1| Transcriptional regulator, xre family [Lactobacillus casei str.
           Zhang]
 gi|327381661|gb|AEA53137.1| LexA repressor [Lactobacillus casei LC2W]
 gi|327384828|gb|AEA56302.1| LexA repressor [Lactobacillus casei BD-II]
          Length = 208

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 58/218 (26%), Gaps = 33/218 (15%)

Query: 7   KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           K+I ++I    E H   P+   + +  GL  +S                   ++   L  
Sbjct: 11  KQILQSIYDAIEDHGYPPTVREIGKSVGLSSSS-------------------TVAAYLEK 51

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPE 122
                    D             ++   +        G       +    N  +   VP+
Sbjct: 52  LLAAGLIAKDPAKPRTLEVTSAGRDFIGVQDHGIPIVGTVAAGVPITAIENIDDYFPVPD 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                   YA   +    + Q  SM+ +    GD +I+        G  ++      +  
Sbjct: 112 DL-----PYAAD-ELFMLRVQGNSMIKIGILDGDQIIVKKQNDAENGQIVVAMTEEDEAT 165

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K     +   I L   N           D+  +  ++
Sbjct: 166 VKRFYKEKNG-IRLHPENDSMDDMFFP--DVTILGIVV 200


>gi|282850224|ref|ZP_06259603.1| repressor LexA [Veillonella parvula ATCC 17745]
 gi|282579717|gb|EFB85121.1| repressor LexA [Veillonella parvula ATCC 17745]
          Length = 223

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%)

Query: 5   SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I + I D +   +   T   +    GL  TS  +S    +E      R P+     
Sbjct: 11  KQRRILDFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +L  T  +I    +   S             +              G    G     V 
Sbjct: 71  TVLEDTKPSISVADNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E            +     + Q  SM+ +   +GD+LI+      N GD ++ +    
Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
           +   K         I L   N  +    V+   IE   I  +
Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219


>gi|154497015|ref|ZP_02035711.1| hypothetical protein BACCAP_01308 [Bacteroides capillosus ATCC
           29799]
 gi|150273414|gb|EDN00542.1| hypothetical protein BACCAP_01308 [Bacteroides capillosus ATCC
           29799]
          Length = 205

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 67/225 (29%), Gaps = 32/225 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   S   ++I++ I      H   PS   +    GL  P++ +   +   E        
Sbjct: 1   MRVLSPKQQQIYDYIVSFQADHGYPPSVREIGEAVGLKSPSTVHFHLKGLEEKG------ 54

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
             +          I                    +P++    +GS    +          
Sbjct: 55  --LIIKAEGKTRAITVSGSAGRPIAEEENPSANRVPVVGNVAAGSPILAEEC------IE 106

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +              +  +    K +  SML      GD+++++   + + G+ ++  
Sbjct: 107 DYLTFDTGG--------LAGEHFALKVRGESMLGAGILPGDLVVVHRQPEAHSGEIVVAL 158

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K L  +      LM  N  Y     + +  E + +++
Sbjct: 159 F-EDEATVKTLRWK-DGHPWLMPENPDYQPI--DGAGAEILGKVV 199


>gi|238019292|ref|ZP_04599718.1| hypothetical protein VEIDISOL_01156 [Veillonella dispar ATCC 17748]
 gi|237863991|gb|EEP65281.1| hypothetical protein VEIDISOL_01156 [Veillonella dispar ATCC 17748]
          Length = 223

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 21/222 (9%)

Query: 5   SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I + I D +   +   T   +    GL  TS  +S    +E      R P+     
Sbjct: 11  KQRRILDFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +L  T  +I    +   S             +              G    G     V 
Sbjct: 71  TVLEDTKPSISVDGNETSSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E            +     + Q  SM+ +   +GD+LI+      N GD ++ +    
Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
           +   K         I L   N  +    V+   IE   I  +
Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219


>gi|238898159|ref|YP_002923840.1| putative phage repressor [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465918|gb|ACQ67692.1| putative phage repressor [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 233

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 71/228 (31%), Gaps = 22/228 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +    T   LA+K  +  +S  +    G E      S++ IF I         
Sbjct: 8   ERLKLAMKEAGYTQGSLAKKVNMAQSSVWRLVSGGGE------SSKKIFPIAQILGVNPA 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSPHN 128
            L +            +                    V+P    ++ + V  P +    +
Sbjct: 62  WLAEGVGEMRPHLNTSQSFSSFDTVAGYSLNQEVQKEVYPLKIYHRIDGVLSPSVGGEKD 121

Query: 129 GI--YAIQT-----------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
               + +                    QD SM P+  +  ++I +++ +     ++    
Sbjct: 122 FEVMFWLPKVVLMQTNASIDDSIAVVAQDNSMSPIINEKSMVIFDTSYKEIKNGKIYAIS 181

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
             G  + + L       I L S N   YP   V M+++  I ++ + S
Sbjct: 182 FGGISMFRTLFVLPEEKIRLKSHNSADYPEVIVPMNELVVIGKVYYVS 229


>gi|296117730|ref|ZP_06836314.1| repressor LexA [Corynebacterium ammoniagenes DSM 20306]
 gi|295969461|gb|EFG82702.1| repressor LexA [Corynebacterium ammoniagenes DSM 20306]
          Length = 235

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 61/220 (27%), Gaps = 16/220 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            ++I E I          PS   +    GL  TS    +   +E +    R P+      
Sbjct: 20  QRRILEVIKDAVVLRGYPPSIREIGDAVGLQSTSSVAYQLNQLEQKGFLRRDPNKPRAVD 79

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +     +   +      +     +   +    + + P        + +    N      +
Sbjct: 80  LRQFAMDDDPKPGRKAAAASTEEDALPETASGVNYIPVVGRIAAGAPITAEENVDAYYPL 139

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+           + +    K    SM       GD +I+ S      GD +       +
Sbjct: 140 PDEIVG-------KGELYMLKVVGESMKDAAILDGDWVIIRSQPTAESGDFVAALLDNEE 192

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +    I L+  N  +        +   + +++
Sbjct: 193 ATVKEFH-QDSSGIWLLPHNEAFAPI--PGDNATIMGKVV 229


>gi|307721127|ref|YP_003892267.1| phage repressor [Sulfurimonas autotrophica DSM 16294]
 gi|306979220|gb|ADN09255.1| putative phage repressor [Sulfurimonas autotrophica DSM 16294]
          Length = 219

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 62/213 (29%), Gaps = 9/213 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I   I        +    +A   G+   +F   K+     RN+ P  E +      + 
Sbjct: 9   EEIKSIISDEIAPKKVFDKDVAAALGISQMNFATMKK-----RNKIPFNELLDFCAKRSI 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                L             K   +       + +GG  D                 +   
Sbjct: 64  SINWLLYGQSPESLVEATNKFYMVKYFSDVNASAGGGSDIECEEIEELEIPEQFVFMLGG 123

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +               SM P +   DI+ +N +        +        +  K + 
Sbjct: 124 EREL----QNIEAINVSGDSMEPTFSYNDIVFINRSKTDINRGGIFTIRTEAGLFIKRVQ 179

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            R    +D++S N  Y   T++ + +E I R++
Sbjct: 180 KRIDGKLDVISDNSIYNTQTLDANQVEVIGRVV 212


>gi|229588706|ref|YP_002870825.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229360572|emb|CAY47429.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 244

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 73/236 (30%), Gaps = 33/236 (13%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + +R  ++P+ L R+ G+  ++ ++       G+   PS + I +I      +  QL
Sbjct: 10  LRELLDRDRISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISRIAEYFRVSTDQL 65

Query: 73  LDL------PFSDGRTTEKKEKEIPLLYF-----PPSGSGGFFDSGVFPTGNKWNTVGVP 121
                              + K+I L            S  F        G+    +   
Sbjct: 66  RGRAAVGALRDDGRDPMHSELKDISLWDDDTPVNDDEVSIPFLREVELAAGSGRFVIEER 125

Query: 122 EIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---- 171
           E  S   G  +++              +  SMLP+ R G  + +N+      GD +    
Sbjct: 126 EKASLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKSGI-GDIVDGDL 184

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIEWIARILWA 221
                 G +  K L       I L S N             ++   I  +  + W 
Sbjct: 185 YAINHNGQLRVKQLYRLPSG-IRLRSFNRDEHPDEDYSFQDIQDEQISILGHVFWW 239


>gi|56551095|ref|YP_161934.1| LexA repressor [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761333|ref|ZP_04759421.1| SOS-response transcriptional repressor, LexA [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260753248|ref|YP_003226141.1| LexA repressor [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|61213251|sp|Q5NR31|LEXA_ZYMMO RecName: Full=LexA repressor
 gi|56542669|gb|AAV88823.1| SOS-response transcriptional repressor, LexA [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241374240|gb|EER63737.1| SOS-response transcriptional repressor, LexA [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258552611|gb|ACV75557.1| SOS-response transcriptional repressor, LexA [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 217

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 53/220 (24%), Gaps = 10/220 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +     +   I        ++PS    K  LD  S +   R       R        +
Sbjct: 1   MLTRKQHDLLLFIHNRLSVSGISPSFEEMKLALDLKSKSGIHRLIKALEERGFIRRLPNR 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             A     + +                K    +   P            P          
Sbjct: 61  ARALEVIRLPEDKTEIQKKISRDYTPPKADNDVIEIPLHGRIA---AGLPIEALEGQ--- 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                     Y         +    SM+      GD +I+    + + G+ ++      D
Sbjct: 115 --SHLAVPPSYLGSGAHYALEVAGDSMVDAGIFDGDYIIVRQTDEAHEGEIVVALIDNSD 172

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K      GR + L   N  Y     + S I    R++
Sbjct: 173 ATLKYFHR-EGRMVRLDPANRAYAPMRYDASRIGIQGRLV 211


>gi|329929059|ref|ZP_08282861.1| putative repressor LexA [Paenibacillus sp. HGF5]
 gi|328937048|gb|EGG33477.1| putative repressor LexA [Paenibacillus sp. HGF5]
          Length = 218

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 59/212 (27%), Gaps = 25/212 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +R  LT   LA    L  +  +                 SI KI      +
Sbjct: 17  IAKNLRTIIKRKGLTQKELAEGTDLSTSVISDYLNEKTLATP-----GSIQKIADFLKVS 71

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             +           T + +  I      P         G+    N  + V  P       
Sbjct: 72  KSE--------IDPTFQPKVNITNNNLIPLIGTICAGDGILAEQNIEDYVFYPFPGRKQP 123

Query: 129 GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV-NCGDRLLI-KPRTGDIVAKVL 185
                       + +  SM+      GDI+ +  A      G  +      + + + K +
Sbjct: 124 D--------YALRVKGDSMINAGIEDGDIVYMKKASWADYNGQIVASVIDDSSEGMLKRI 175

Query: 186 ISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIA 216
               G  ++ L+  N  Y +  +  ++     
Sbjct: 176 KWTEGSATMQLIPENDNYEIRELPPNEFSICG 207


>gi|323703583|ref|ZP_08115228.1| transcriptional repressor, LexA family [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531486|gb|EGB21380.1| transcriptional repressor, LexA family [Desulfotomaculum
           nigrificans DSM 574]
          Length = 213

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 22/224 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTE 56
           M +   +++   I    ++    PS   +    GL  +S   +  KR   +G  R   T+
Sbjct: 1   MLNAREEEVLRVIIENVKQKGYPPSVREIGEAVGLSSSSTVHSYLKRLEQKGYLRRDPTK 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + +         L     +        E+ I +       +G           N  N
Sbjct: 61  --PRAIEVVGMEYGNLNATNSTAKGKIFDNEELITVPILGQVAAGVPL----LAVENYDN 114

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            + +P   + +        +         SM      +GDI+++      N GD ++   
Sbjct: 115 RITLPRSFTGY-------GEFFMLTICGDSMIEAGILEGDIVLVRRQQSANNGDIVVALL 167

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   K     +   + L   N       V+   ++ + +++
Sbjct: 168 D-DEATVKRFYKEKD-FVRLQPANSLLAPIMVKN--VKILGKVV 207


>gi|303257626|ref|ZP_07343638.1| prophage MuSo1, transcriptional regulator, Cro/CI family
           [Burkholderiales bacterium 1_1_47]
 gi|302859596|gb|EFL82675.1| prophage MuSo1, transcriptional regulator, Cro/CI family
           [Burkholderiales bacterium 1_1_47]
          Length = 230

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 63/217 (29%), Gaps = 13/217 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDP--TSFNKSKRF--GIEGRNRWPSTESIFKILAATN 66
           + ++ +  R   + + L  + G      S  + +       G       +    I     
Sbjct: 10  DNLNTLVSRAG-SLAELNEQLGRKRNHPSLGQIRNRSDRGNGTFYEMGDKLARDIEEKLG 68

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   +     +        +  I L         G      +        + V      
Sbjct: 69  LSYGWM---DTNHTPDDWPDDNIINLKRINIQACCGSAGIQNYEDDAFVEQIQVSRPWFQ 125

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            N     +           SM P +R GD+++++   +    D +      GD+  K + 
Sbjct: 126 ENISKIREQGYELITASGDSMEPTFRNGDLIVVDRQDRDLKRDGVFCVLVDGDLYVKRVQ 185

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE----WIARIL 219
                ++  +S N  Y    + + ++E     + R++
Sbjct: 186 RIP-GAVLFISDNSLYRPFEIPIKEVEFRLQVLGRVV 221


>gi|15674958|ref|NP_269132.1| putative repressor protein [Streptococcus pyogenes M1 GAS]
 gi|13622103|gb|AAK33853.1| putative repressor protein - phage associated [Streptococcus
           pyogenes M1 GAS]
          Length = 248

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 70/249 (28%), Gaps = 59/249 (23%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  +    NLT   LA + G   ++ +K ++       R P    I +I         ++
Sbjct: 11  VKELRLSKNLTMEQLAEEVGKTKSTISKWEKGT-----RSPKIYEIEEIAKFFGVEPKKM 65

Query: 73  LDLPFSDGRTTEKK--------------------------------EKEIPLLYFPPSGS 100
           +          + +                                E++  +     +  
Sbjct: 66  MFGDNPTPTAPQVELIPSTLQKINSTSSQLEHKRQLNVLDYAETQLEQQNTVEEPQATYY 125

Query: 101 GGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
              +       G           T+ +P               D        SM P Y  
Sbjct: 126 TYNYYDHAASAGTGQYLNDVQVETIELPVDYDA----------DFVIPVYGDSMEPKYHS 175

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS- 210
           GD + +  ++++  GD  +     GD   K L+     +  L SLN    YP   ++   
Sbjct: 176 GDYVFVKLSVELTDGDIGV-FEYYGDAYIKQLLINDKGAF-LHSLNQCGDYPDIPIDRDS 233

Query: 211 DIEWIARIL 219
           D   I  ++
Sbjct: 234 DFRIIGEVM 242


>gi|283851548|ref|ZP_06368828.1| putative phage repressor [Desulfovibrio sp. FW1012B]
 gi|283573082|gb|EFC21062.1| putative phage repressor [Desulfovibrio sp. FW1012B]
          Length = 260

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 27/239 (11%)

Query: 5   SHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSK--------RFGIEGRNRWPST 55
           S K+  EA+ R+ +    +    LA   G+   + N +          F   G     S 
Sbjct: 21  SRKRFDEALGRLIQAVGGSDAGQLAVFLGISRQAINSAMAKNKIPPAWFVAVGEKTDISI 80

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK- 114
           + + K      +   +            ++     P        +           G   
Sbjct: 81  DWLVKGGGPMRQGNAEPFTAIS-CIVPADEPPYMSPEAAPTMGYTLVPKVKARLAAGTGS 139

Query: 115 -------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
                                G      +         SM P+  + D ++++       
Sbjct: 140 LETEGVVVGYYAFKTDFLRRKGR---PKKMVLMDVAGDSMEPVLLESDTVLIDEGQNEII 196

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIARILWA 221
              L       ++  K L       + L S N  Y    V+M+      +  I R++W+
Sbjct: 197 PGGLFAIGIENEVFVKYLDRIP-GKLVLRSKNPAYMPIEVDMNGDLAMSVRIIGRVVWS 254


>gi|78777294|ref|YP_393609.1| putative phage repressor [Sulfurimonas denitrificans DSM 1251]
 gi|78497834|gb|ABB44374.1| putative phage repressor [Sulfurimonas denitrificans DSM 1251]
          Length = 219

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 9/195 (4%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
             +A   G+   +F   K+     RN+ P  E +      +      L            
Sbjct: 27  KDVADILGISQMNFATMKK-----RNKIPFGELLDFCALKSISINWLLYGQSPESLVEAT 81

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
            +   I       + +GG  +            + +P+      G               
Sbjct: 82  NRFFMIKYFSDVSASAGGGAELENESN----EMIKIPQEFVAMLGGERELKHIEAINVSG 137

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P +   DI+ +N   +      +        +  K +  R    ID++S N  Y  
Sbjct: 138 DSMEPTFSYNDIVFINRDKKDLQRGGIFTIRTESGLFIKRVQKRIDGKIDVISDNPIYST 197

Query: 205 DTVEMSDIEWIARIL 219
            T+ + +IE I R++
Sbjct: 198 QTLNLGEIEVIGRVV 212


>gi|331701325|ref|YP_004398284.1| SOS-response transcriptional repressor, LexA [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128668|gb|AEB73221.1| SOS-response transcriptional repressor, LexA [Lactobacillus
           buchneri NRRL B-30929]
          Length = 212

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 43/233 (18%)

Query: 1   MTSFSHK------KIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIE 47
           M+  ++       +I   I          P+   +     L  TS       + +R G  
Sbjct: 1   MSKTTNDPQSKQYQILHFIWERVNEQGYPPTVREIGEAVHLSSTSTVHGHIARLERKGY- 59

Query: 48  GRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                        I+    +     +     D    + ++K+IP+L    +G        
Sbjct: 60  -------------IVKDPAKPRALEVTSSGLDVLGMQPQQKQIPVLGTVTAG------EP 100

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
           +       +   +P   +  +            + +  SM+      GD +++      +
Sbjct: 101 ILAVQEATDYFPLPPALAHSDQPL------FMLQIRGESMINAGILDGDYVVVRKQESAD 154

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K           L   N       +    +  + +++
Sbjct: 155 NGDIVIAMTDENEATCKRFFKESD-HYRLQPENDTMAPIILTK--VSILGKVV 204


>gi|257430904|ref|ZP_05607284.1| phage repressor protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257278334|gb|EEV08970.1| phage repressor protein [Staphylococcus aureus subsp. aureus
           68-397]
          Length = 242

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++     ++ S L+R+ G+   S +       E +        + K L      + 
Sbjct: 10  DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 67

Query: 71  QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGG---------------FFDSG 107
                        +           ++  +L +                           
Sbjct: 68  GFDISKNRKIENNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDGYKESKLVSYIA 127

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              TG         +I          +T    D        SM P+ ++G    +     
Sbjct: 128 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 187

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   L+    G  + K +       I+L+SLN  Y    V   SDI+ + +++
Sbjct: 188 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSDIKVMGKVV 241


>gi|119443658|ref|YP_918896.1| cI-like repressor [Staphylococcus phage phiPVL108]
 gi|257425606|ref|ZP_05602030.1| phage77ORF011 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257436507|ref|ZP_05612551.1| CI-like repressor [Staphylococcus aureus subsp. aureus M876]
 gi|282914289|ref|ZP_06322075.1| putative prophage L54a, repressor protein [Staphylococcus aureus
           subsp. aureus M899]
 gi|282924583|ref|ZP_06332251.1| CI-like repressor [Staphylococcus aureus subsp. aureus C101]
 gi|293503366|ref|ZP_06667213.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510381|ref|ZP_06669087.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293530920|ref|ZP_06671602.1| putative prophage L54a, repressor protein [Staphylococcus aureus
           subsp. aureus M1015]
 gi|119225784|dbj|BAF41155.1| cI-like repressor [Staphylococcus phage phiPVL108]
 gi|257271300|gb|EEV03446.1| phage77ORF011 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257283858|gb|EEV13981.1| CI-like repressor [Staphylococcus aureus subsp. aureus M876]
 gi|282313418|gb|EFB43813.1| CI-like repressor [Staphylococcus aureus subsp. aureus C101]
 gi|282321470|gb|EFB51795.1| putative prophage L54a, repressor protein [Staphylococcus aureus
           subsp. aureus M899]
 gi|290920188|gb|EFD97254.1| putative prophage L54a, repressor protein [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095032|gb|EFE25297.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466745|gb|EFF09265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
          Length = 238

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++     ++ S L+R+ G+   S +       E +        + K L      + 
Sbjct: 6   DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63

Query: 71  QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGG---------------FFDSG 107
                        +           ++  +L +                           
Sbjct: 64  GFDISKNRKIENNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDGYKESKLVSYIA 123

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              TG         +I          +T    D        SM P+ ++G    +     
Sbjct: 124 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 183

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   L+    G  + K +       I+L+SLN  Y    V   SDI+ + +++
Sbjct: 184 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSDIKVMGKVV 237


>gi|325962853|ref|YP_004240759.1| SOS-response transcriptional repressor, LexA [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468940|gb|ADX72625.1| SOS-response transcriptional repressor, LexA [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 244

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 57/220 (25%), Gaps = 12/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKI 61
            KKI E I R    +   PS   +    GL   +S  ++  +    G  R        + 
Sbjct: 25  QKKILETIQRSVNENGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLR--RDPKRPRA 82

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGV 120
           +                             +   P +         G    G       +
Sbjct: 83  MEVLMPLTLDSGAAKTQGRPADAAAPGGATVTELPTALDTAMVPLVGRIAAGGPILADQL 142

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E   P       Q +    +    SM+      GD +++        GD +       +
Sbjct: 143 VEDVMPLPRQLVGQGELFMLRVAGDSMVDAAICDGDWVVVRRQADAANGDIVAALLD-DE 201

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +R     L+  N  Y     + +    + +++
Sbjct: 202 ATVKTF-RQRDGHTWLLPQNTQYEPILGDHA--TIMGKVV 238


>gi|170289513|ref|YP_001739751.1| LexA family transcriptional regulator [Thermotoga sp. RQ2]
 gi|229470191|sp|B1L838|LEXA_THESQ RecName: Full=LexA repressor
 gi|170177016|gb|ACB10068.1| transcriptional repressor, LexA family [Thermotoga sp. RQ2]
          Length = 197

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 60/224 (26%), Gaps = 38/224 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + ++  +   I+   E++   PS   +AR+  + P       R             
Sbjct: 1   MKDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                    +    +                    +    P                  +
Sbjct: 43  -------LLHLIALEKKGYIERKNGKPRALRVSKSIRNKIPLIGEIRAGEKREAIEYLED 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            + +PE                  K +  SM       GD++++        GD +    
Sbjct: 96  YIEIPESFLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVAAMV 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K    +RG +++L   N        +   ++ + +++
Sbjct: 150 D-GEVTLKKFY-QRGDTVELRPANREMSSMFFKAEKVKILGKVV 191


>gi|313889436|ref|ZP_07823084.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122268|gb|EFR45359.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 230

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 63/228 (27%), Gaps = 27/228 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + ++  ++   L  + G++  + +  ++         P+ + + K++     + 
Sbjct: 4   GEQLKAIRQKEKMSQEELGHQIGVNKMTISNWEQGKN-----SPNQKHLAKLVDIFQVSE 58

Query: 70  CQLLDLPFSDGRTTE-----------------KKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                         +                  KE ++  +         +        G
Sbjct: 59  DYFNLYHAILVPYKQLNTHNQKKVVSFSQKLLAKETKVIAIPTSKKKLYPYRVYESLSAG 118

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
             ++     +              D        SM P Y  G+++++        G  + 
Sbjct: 119 GGFSY--FGDGNYDEVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQEGFDYDG-AIY 175

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                G    K +       + L+SLN  Y        +    I +I+
Sbjct: 176 AVEWDGQTYIKKVYREENG-LRLVSLNKKYSDKFAPFDENPRIIGKII 222


>gi|323356742|ref|YP_004223138.1| SOS-response transcriptional repressors [Microbacterium testaceum
           StLB037]
 gi|323273113|dbj|BAJ73258.1| SOS-response transcriptional repressors [Microbacterium testaceum
           StLB037]
          Length = 229

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 25/216 (11%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDP-TSF-NKSKRFGIEGRNRWPSTESIFKILAA 64
           I E I R   RH   PS   +    GL   +S  ++  +  + G  R    ++       
Sbjct: 28  ILEVIQRSIARHGYPPSMREIGDAVGLKSLSSVTHQLNQLELSGYLRRDPGKTRA----- 82

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
               +  L+DLP +           +      P          +           +P   
Sbjct: 83  ----MEVLIDLPGAAAENPADTAPALGDAALVPLVGRIAAGVPITADQQVEEIFPLPRQL 138

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                    + +    K    SM+      GD +++ S      G+ +      G+   K
Sbjct: 139 VG-------KGELFMLKVSGDSMIDAAICDGDWVVVRSQATAENGEIVAAMLD-GEATVK 190

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               R      L+  N  +        +   + R++
Sbjct: 191 TFRRR-DGHTWLLPRNSAFEPIL--GDEAVVLGRVV 223


>gi|309803432|ref|ZP_07697526.1| peptidase S24-like protein [Lactobacillus iners LactinV 11V1-d]
 gi|308164441|gb|EFO66694.1| peptidase S24-like protein [Lactobacillus iners LactinV 11V1-d]
          Length = 239

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 25/220 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KKI   + +    H +T + LA K+ +  T+ +   R          + E +   L   
Sbjct: 14  RKKISYNLKKFM--HGMTQADLAEKSDIPLTTLSGYLREKST--PNAGNLEKLAIALNVK 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEI--------------PLLYFPPSGSGGFFDSGVFPT 111
              I              +    E                ++   P          +   
Sbjct: 70  KSDIDPRYTFTDIMDFVEKAPLGEYISPVSNVEYLYNTDTVVKQIPLLGDIACGDPITAD 129

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR- 170
            N  + +        +             KT+  SM P    G I+I+     V  G+  
Sbjct: 130 ENIEDYIP-----ETYTRGNVPSGTLFALKTKGHSMEPTIPDGSIVIIRQQPNVEDGEIA 184

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            ++         K +      ++ L   N  Y    +  +
Sbjct: 185 AVLVDDDARATLKRI-KHSNDAVILQPDNREYDPIVLTPN 223


>gi|222151788|ref|YP_002560946.1| hypothetical protein MCCL_1543 [Macrococcus caseolyticus JCSC5402]
 gi|222120915|dbj|BAH18250.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 209

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 73/220 (33%), Gaps = 20/220 (9%)

Query: 3   SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              +K+I    I +  + + +  + +++  G+  T+ +            +P  + I  +
Sbjct: 1   MLGNKEIMAKNIKKFMKLNKIDRNKMSKDLGVSYTTLSDWINAKT-----YPRIDKIELM 55

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               + +   L++       +       IP+L    +G         +   N  +   + 
Sbjct: 56  ANYFSISKSDLVEDSNDVDISNILPVISIPVLSKVSAGLPI------YAEQNIVDQTFIS 109

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +    +   Y              SM   ++ GDI+I+     +  G   +++    +  
Sbjct: 110 KTLVKNGKEY------FGLIVSGDSMDKEFKDGDIVIVEYNSCIENGQIGVVQINGYNAT 163

Query: 182 AKVLISRRGRSIDL-MSLNCCYPVDTVEM-SDIEWIARIL 219
            K +   R   I L  S N  +         +I ++ R++
Sbjct: 164 VKRVRYNRDTIILLPESNNQKHQPQFYNKNDEIVFVGRVV 203


>gi|325288089|ref|YP_004263879.1| helix-turn-helix domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324323543|gb|ADY31008.1| helix-turn-helix domain protein [Cellulophaga lytica DSM 7489]
          Length = 257

 Score = 88.7 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 62/219 (28%), Gaps = 16/219 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  +     +T   LA   G+     +  +          P+ E++ ++       
Sbjct: 4   IATNIRHLRSLKGVTQQSLAIDLGITRARVSSYEEGRS-----APTIETLIQLSDYFKLP 58

Query: 69  -----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVP 121
                   L     +       +    P+     + +           G    ++     
Sbjct: 59  IDVLVRNDLSKATDASFIEIGNQRVLFPIQVDDSNDNLIEIVPVAASAGYLAGYDDPEYI 118

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTGD 179
           E  S     +    +      +  SMLP+     ++   +     +  G   ++      
Sbjct: 119 EQLSKIKLPFLPTGKHRAFPIKGDSMLPMKNGAFVIGKFIEDRRDITSGKTYVLVTLNDG 178

Query: 180 IVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +V K +     +  ++ L+S N  Y    V + ++  I 
Sbjct: 179 MVYKRVYNQIEKNNTLKLVSDNNAYEPYEVAIDEVLEIW 217


>gi|319441578|ref|ZP_07990734.1| LexA repressor [Corynebacterium variabile DSM 44702]
          Length = 253

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 16/217 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I + I    +     PS   +    GL+ TS        +E +       +  + + 
Sbjct: 44  QRRILDVIKDGIQFRGYPPSIREICDAVGLNSTSSVSYHLKELERKGYLRREGNKPRAVD 103

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                       P     +   K   +P   F P        S +    +      +P+ 
Sbjct: 104 IRGLDPADSTSKPGPKPASVLPKG--MPEPSFVPVLGQIAAGSPILAEQHVDGHFPLPQE 161

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                       +    +    SM       GD +++ S      G+ +      G+   
Sbjct: 162 LVGG-------GELFLLQVVGESMQDAGILNGDWVVVRSQQTAELGEFVAAMID-GEATV 213

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K        ++ L+  N  +        + + + R++
Sbjct: 214 KEFHP-SDGTVWLLPHNPLFEPI--RGDEAQILGRVV 247


>gi|291563430|emb|CBL42246.1| SOS-response transcriptional repressor, LexA [butyrate-producing
           bacterium SS3/4]
          Length = 205

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 35/220 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
             ++I E I  M  +    P+   +     L  TS   +  +     G  R   T+    
Sbjct: 9   KQREILEYIKEMILKKGYPPAVREICEAVHLKSTSSVHSHLESLEKNGYIRRDPTK---- 64

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                     + +++   D   T ++   +P++    +G             N  + + +
Sbjct: 65  ---------PRTIEILDDDFALTRRELVNVPVIGTVAAGVPI------LAEQNIEDYLPI 109

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P    P+        +    K +  SM       GD +I+        GD+++       
Sbjct: 110 PAEILPN-------KEVFMLKVKGNSMIEAGIYNGDKVIVAKQPNAENGDKVVALVD-DS 161

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +E + +++
Sbjct: 162 ATVKTFYK-ENGHFRLQPENSSMDPIIL--DQVEILGKVI 198


>gi|253699290|ref|YP_003020479.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251774140|gb|ACT16721.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 209

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 57/215 (26%), Gaps = 21/215 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H +    I +      LT    A   G+     +  +     GR R PS   +  +    
Sbjct: 7   HAETGVRIKKARLALGLTQKEFAASLGIVQGFLSGIE----TGRKR-PSDTLLIALSHTF 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 L D      +     ++               F       G     + VP+   
Sbjct: 62  GINAQWLHDGSGESFKNELAADQPKVSRAPLLDVIPDSFPDDP---GAVSRYISVPD--- 115

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKV 184
                  +             M P  R GD++I      Q   GD +++  R G+ + + 
Sbjct: 116 -------LPEGCYAIVCYGDFMSPTIRDGDVVIFRPESGQKKSGDIIIVHNRWGEPILRR 168

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   I L   N  Y            I  ++
Sbjct: 169 Y-RVKDDEIYLAPDNPAYAPFQ-PDDGTRTIGIVV 201


>gi|325912799|ref|ZP_08175178.1| peptidase S24-like protein [Lactobacillus iners UPII 60-B]
 gi|325477930|gb|EGC81063.1| peptidase S24-like protein [Lactobacillus iners UPII 60-B]
          Length = 230

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 19/231 (8%)

Query: 4   FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +K+I+   +     ++ +  + L    G    + +       +   R    E +    
Sbjct: 3   LGNKEIFSQNLKYYMYKYGVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60

Query: 63  AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSG----------SGGFFDSGVF 109
                 + +       D           ++  +  +                  +  G  
Sbjct: 61  NIKKSDLVEKQTDEQIDISPVYNQLTDIRKHKVYSYAKQQLDEQTDNLNEHRSIYLVGSS 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
             G   +   +       + I A    D     +  SM P      I+  +    +  G+
Sbjct: 121 AAGLPLDYGDLDAELIDLSNIPA--KADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGE 178

Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 179 IGIFEINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFNGEQVRILGKVV 229


>gi|170017347|ref|YP_001728266.1| LexA repressor [Leuconostoc citreum KM20]
 gi|226736103|sp|B1MZ70|LEXA_LEUCK RecName: Full=LexA repressor
 gi|169804204|gb|ACA82822.1| LexA repressor [Leuconostoc citreum KM20]
          Length = 211

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 55/220 (25%), Gaps = 28/220 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              ++   I      +   P+   +    GL  +S      +R   +G     +++   +
Sbjct: 7   KQIQVLRFIHEAQLNNGYPPTVREVGEAVGLSSSSTIHGHIERLVKKGYLLKDASKPRAR 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +  T+  +  L             +      +                          +
Sbjct: 67  AIEVTDSGLEALGVSTTPGRIPVLGQVTAGAPILAV--------------EEEATEFFPI 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+                    +  SM+ +    GD +I+      + GD ++      +
Sbjct: 113 PDNLMQF------DGDMFMLNVRGNSMINIGILDGDKVIVRKQDNADNGDVVVAMNDDDE 166

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       ++   +  + +++
Sbjct: 167 ATVKRFFR-EADHFRLQPENDAMAPIILK--QVAILGKVI 203


>gi|256832286|ref|YP_003161013.1| SOS-response transcriptional repressor, LexA [Jonesia denitrificans
           DSM 20603]
 gi|256685817|gb|ACV08710.1| SOS-response transcriptional repressor, LexA [Jonesia denitrificans
           DSM 20603]
          Length = 241

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 13/227 (5%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPS 54
              + ++  +   I +  +     PS   + R+ GL   S  K +   +E R    R P+
Sbjct: 13  APLTSRQRAVLACITQSLKDRGYPPSMREIGREVGLTSPSSVKHQLKVLEERGFVRRDPN 72

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGN 113
                +++    E              ++   E  + + +    S        G    G 
Sbjct: 73  RPRAIEVIPTPREKDTSSPSPDPGLHHSSRNTENVVMIPHGSRTSDLRPVPLVGRIAAGA 132

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                   E             +    +    SM+      GD +++        G+ + 
Sbjct: 133 PILADQDIEDVFTLPRQLVGDGELYMLRVSGESMVDAAICDGDFVVVRRQGVAENGEIVA 192

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K L   +     LM  N  Y        D E + +++
Sbjct: 193 AMID-GEATVKTL-KLKDGHRWLMPHNPLYDPIL--GDDAEILGKVV 235


>gi|197301717|ref|ZP_03166787.1| hypothetical protein RUMLAC_00443 [Ruminococcus lactaris ATCC
           29176]
 gi|197299157|gb|EDY33687.1| hypothetical protein RUMLAC_00443 [Ruminococcus lactaris ATCC
           29176]
          Length = 205

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I + I     +    P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQEEILQYIKDQILQRGFPPAVREICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL      + + +                       P          +    N  +   
Sbjct: 69  EILDDDFNLLRREMVQ--------------------VPIVGRVAAGEPILAQQNIEDYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
            P         Y    Q    K Q  SM+      GD +++  A     G++++      
Sbjct: 109 FPAE-------YVSNKQLFLLKVQGESMVNAGILNGDYVLVEEAKTAENGEKVV-AMIED 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K         I L   N       V+  D+  + R++
Sbjct: 161 GATVKTFYREE-GVIRLQPENDFMDPIIVQ--DVVILGRVI 198


>gi|295696259|ref|YP_003589497.1| transcriptional repressor, LexA family [Bacillus tusciae DSM 2912]
 gi|295411861|gb|ADG06353.1| transcriptional repressor, LexA family [Bacillus tusciae DSM 2912]
          Length = 202

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 59/220 (26%), Gaps = 37/220 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSK-RFGIEGR-NRWPSTESIFK 60
            + I + I +        PS   +     L  + + ++   R    G   R P+     +
Sbjct: 7   QQDILDFIKKEVREKGYPPSVREIGEAVNLSSSATVHRHLGRLEQMGYIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                      +  + +  +   P          +    N  +   +
Sbjct: 67  ILE---------------------EDAQTVGPVTMAPVVGRVTAGLPITAVENIEDYFPL 105

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P   +  + +          +    SM       GD++++        GD ++     G+
Sbjct: 106 PASWTGGDPV-------FLLRVVGDSMIEAGIFDGDLVVVRQQPTAENGDIVVAMTDEGE 158

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    +    I L   N        +   +  +  ++
Sbjct: 159 ATVKRFY-QEKDRIRLQPENSTMAPLYYKN--VTVLGLVI 195


>gi|323526205|ref|YP_004228358.1| LexA family transcriptional repressor [Burkholderia sp. CCGE1001]
 gi|323383207|gb|ADX55298.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1001]
          Length = 220

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 19/213 (8%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSA-------NSAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I              +   +    L  P          G    G+   
Sbjct: 54  GVIELAAGASRGI-----RLLPPQEFGQDGTQHQFTLPHPSIMQLSLPLVGRVAAGSPIL 108

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 109 AQEHIAQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKRSEAKDGQIIIAR- 167

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
              D+  K L  R    I+L++ N  Y    VE
Sbjct: 168 LGDDVTVKRLKRRPNG-IELIAENPDYENIFVE 199


>gi|319948152|ref|ZP_08022314.1| LexA repressor [Dietzia cinnamea P4]
 gi|319438181|gb|EFV93139.1| LexA repressor [Dietzia cinnamea P4]
          Length = 235

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 22/220 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            K +   I    +     PS   +    GL  TS    +   +E +    R P       
Sbjct: 26  QKSVLLHIHDTVKERGYPPSIREIGDAVGLQSTSSVAHQLRTLEKKGFLTRDPHKPRAVD 85

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +     +             R +   E       + P          +           +
Sbjct: 86  VHGVPGQKARGRRSPTSEVRRPSGAVE-----PVYVPVLGRIAAGGPILAEQAVEEVFPL 140

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P                   +    SM+      GD +++      + GD +      G+
Sbjct: 141 PTDLVGS-------GDLFMLRVVGESMIDAAICDGDYVVVRRQNVADNGDIVAAMID-GE 192

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         + L+  N  +            + +++
Sbjct: 193 ATVKTFRKDSTG-VWLLPHNPSFSPI--PGEHATILGKVV 229


>gi|300311389|ref|YP_003775481.1| SOS-response transcription repressor [Herbaspirillum seropedicae
           SmR1]
 gi|300074174|gb|ADJ63573.1| SOS-response transcription repressor (RecA-mediated autopeptidases)
           protein [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 55/216 (25%), Gaps = 22/216 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++I   I    E     P  + +A + G                R+   + E
Sbjct: 1   MLKLTARQEQILNLIKNAIENTGFPPTRAEIAAELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +       I               +       L  P          G    G+   
Sbjct: 46  HLQALARKGAIEISPGTSRGIRLREPGGQAASRQMALPHPALMQLSLPLIGRVAAGSPIL 105

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K +  SM       GD+L +    Q   G  ++ + 
Sbjct: 106 AQEHVEKTYQVDPAMFSGKPDYLLKVRGMSMRDAGILDGDLLAVRKTDQARNGQIVVAR- 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  I L   N  +    V+ ++
Sbjct: 165 LADEVTVKRYQK-TGSVITLFPENPDFKPIIVKPNE 199


>gi|84393159|ref|ZP_00991923.1| putative transcriptional regulator [Vibrio splendidus 12B01]
 gi|84376211|gb|EAP93095.1| putative transcriptional regulator [Vibrio splendidus 12B01]
          Length = 227

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 59/204 (28%), Gaps = 30/204 (14%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           + L++  G+  ++    +  G    + +     I K  + T +   +L            
Sbjct: 47  TDLSKALGVSASTIQTWRMRGKIPEDIFLKANEIAKSGSLTPKGYLEL-----KFFDIEV 101

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
                  +     S +                     E        +           + 
Sbjct: 102 SAGHGALVEKEEESSAMV-----------------FSERFIRQELGF-NPNNIFLMPVRG 143

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM+P  +   I+++N  +     D + +      ++ K L       I ++S N  Y  
Sbjct: 144 DSMIPTLKNQSIVMVNR-VDGFSTDGIYVFRYDNRLMVKRLQFLPNG-IKVVSDNSAYEA 201

Query: 205 DTVEMSDI-----EWIARILWASQ 223
             +   +I     E I  ++W+ Q
Sbjct: 202 WELGKEEIKGNDFEIIGEVVWSGQ 225


>gi|160938934|ref|ZP_02086285.1| hypothetical protein CLOBOL_03828 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437897|gb|EDP15657.1| hypothetical protein CLOBOL_03828 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 56/221 (25%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I E I     +    P+   +     L  TS   S    +E +    R P+     
Sbjct: 41  KQQEILEYIKETILQKGYPPAVREICEAVHLKSTSSVHSHLSALEDKGYIRRDPTKPRTI 100

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL  T     + +                       P          +       +   
Sbjct: 101 EILDDTFNFNRREMVN--------------------IPLVGTVAAGEPILAEERIEDYFP 140

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
            P    P+       ++    K +  SM+      GD LI+        G+ ++      
Sbjct: 141 FPAEILPN-------SETFMLKVKGESMIGAGILPGDKLIVEQCPTAANGEIVVALVD-D 192

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N            +E + +++
Sbjct: 193 SATVKRFYK-ENGHYRLQPENDAMEPII--TETVEILGKVI 230


>gi|37930231|gb|AAP76282.1| unknown [Pseudomonas sp. PCL1171]
          Length = 244

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 33/236 (13%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + +R  ++P+ L R+ G+  ++ ++       G+   PS + I +I          L
Sbjct: 10  LRELLDRDRISPTELHRRTGVPQSTLSRIL----SGKIVDPSDKHISRIAEYFRVGTDYL 65

Query: 73  L------DLPFSDGRTTEKKEKEIPLLYF-----PPSGSGGFFDSGVFPTGNKWNTVGVP 121
                              + K+I L            S  F        G+    +   
Sbjct: 66  RGRAAVGAQRDEGRDPMHSELKDISLWDDDTPVNDDEVSIPFLREVELAAGSGRFVIEES 125

Query: 122 EIRSPHNGIYAIQTQDT------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---- 171
           E  S   G  +++              +  SMLP+ R G  + +N+      GD +    
Sbjct: 126 EKASLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKSGI-GDIVDGDL 184

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV------DTVEMSDIEWIARILWA 221
                 G +  K L       I L S N             ++   I  +  + W 
Sbjct: 185 YAINHNGQLRVKQLYRLPSG-IRLRSFNRDEHPDEDYSFQDIQDEQISILGHVFWW 239


>gi|332342949|gb|AEE56283.1| repressor protein [Escherichia coli UMNK88]
          Length = 215

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 56/211 (26%), Gaps = 18/211 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++     ++   LA   G+     +           R P+ E I +I+ A       + 
Sbjct: 10  KQLMRAQGMSQDSLADLMGITKGGLSHWLNG-----RREPNLEDIARIMRALGRRQFTVT 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                   +        P    P                N  +T                
Sbjct: 65  HDGMVIDDSVSNTLPGAP----PRDLGSYPVVDWKDAVNNMEDTRR--STLPHVTTSVIC 118

Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISR 188
                    +  SM          G +++++       G  ++ +   G     K L+  
Sbjct: 119 SDDSYWLVAKGESMNAPQGLSIPAGTMILVDPHAPAIDGKLVIAQLEEGQTPTFKQLVID 178

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+ + L SLN  YP   +     + I  ++
Sbjct: 179 GGQRL-LRSLNPLYPPIPMNPES-KIIGVVV 207


>gi|145636124|ref|ZP_01791794.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae PittHH]
 gi|145270646|gb|EDK10579.1| dihydroorotate dehydrogenase 2 [Haemophilus influenzae PittHH]
          Length = 218

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 68/224 (30%), Gaps = 34/224 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG----------LDPTSFNKSKRFGIEGRNRWPSTESI 58
           + E I    E+  ++   LA +                     ++       R P  E I
Sbjct: 4   LGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGN-----RTPDLEDI 58

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             I  A N     L ++   D   +E KE         P  +G + D       + +  +
Sbjct: 59  SIISKALNI----LPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMI 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
               I S               + +  SMLP + +GD+++++  I    G  +       
Sbjct: 115 PSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDN 165

Query: 179 DIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216
           +   K       +        +L+  N  +P  +    +I  I 
Sbjct: 166 EATFKQYKELGTKTPEGIPHFELVPFNPMFPTLSSLNQEIRIIG 209


>gi|304404437|ref|ZP_07386098.1| transcriptional repressor, LexA family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346244|gb|EFM12077.1| transcriptional repressor, LexA family [Paenibacillus
           curdlanolyticus YK9]
          Length = 208

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 58/226 (25%), Gaps = 35/226 (15%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPS 54
           +  S+++  I E I          PS   +    GL   ++ +    R   +G   R P+
Sbjct: 3   SKLSNRQQAILEFIKNEVRDKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGFIRRDPT 62

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                +IL                     +            P          +  T N 
Sbjct: 63  KPRAIEILDD-----------------DADTDSSFAMSFAKVPIVGKVTAGVPITATENI 105

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
            +   +P                        SM       GD +I+      + GD ++ 
Sbjct: 106 EDFFPLPSHMVG-------DHDVFILSVMGESMIEAGIHDGDYVIVRQQPTASNGDIVVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +   + L   N       ++   +  + +++
Sbjct: 159 MTEEDEATVKTFYKEKD-HVRLQPQNPTMEPILLKN--VTILGKVI 201


>gi|298484865|ref|ZP_07002964.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160552|gb|EFI01574.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320330710|gb|EFW86685.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330984512|gb|EGH82615.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009813|gb|EGH89869.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 243

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y     + G   + +         
Sbjct: 65  GPKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRMPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231


>gi|86606635|ref|YP_475398.1| S24 family peptidase [Synechococcus sp. JA-3-3Ab]
 gi|86555177|gb|ABD00135.1| peptidase, S24 (LexA) family [Synechococcus sp. JA-3-3Ab]
          Length = 218

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 13/196 (6%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
              R+AG+  T+     +  +      P  +   KI      ++  L+    S       
Sbjct: 24  AFGRRAGISDTALRSYLKGSV------PGIDKAVKIAQVGGVSLSWLITGEGSPRLEAGD 77

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
            + E   +      +       +    +  + +         +         +  + Q  
Sbjct: 78  AKTEYVYVPLVDVVASAGAG-ALVREESIESVLAFERNWLRAHLKG-NPDGLSLIRVQGD 135

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           SM P    GD + +    ++  G+ + +  R G++  K L    G  + ++S N  +P  
Sbjct: 136 SMSPTLEDGDWIFVERQKEL-GGEGIYVFQRDGELWVKRLQRLSGSRVKVISDNPRFPSF 194

Query: 206 TVEMSD----IEWIAR 217
            V+ +D    +  I R
Sbjct: 195 VVDCADPVNGLILIGR 210


>gi|70726569|ref|YP_253483.1| LexA repressor [Staphylococcus haemolyticus JCSC1435]
 gi|123762305|sp|Q4L648|LEXA_STAHJ RecName: Full=LexA repressor
 gi|68447293|dbj|BAE04877.1| SOS regulatory LexA protein [Staphylococcus haemolyticus JCSC1435]
          Length = 207

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 59/227 (25%), Gaps = 34/227 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53
           M   +    +I++ I  + +     PS   +    GL   ++ +       E     R P
Sbjct: 1   MRELTKRQSEIYDYIKHVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIKRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +I+                           +    + P          +    N
Sbjct: 61  TKPRAIEIV------------------SEQTNDAVNMEETIYVPVIGKVTAGIPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +PE  +  +      +          SM       GD +I+ S      GD ++
Sbjct: 103 IEEYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIV 157

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       ++   +  I +++
Sbjct: 158 AMTEDDEATVKRFYKEK-TRYRLQPENSTMSPIYLDN--VTVIGKVI 201


>gi|323441303|gb|EGA98969.1| hypothetical protein SAO46_2737 [Staphylococcus aureus O46]
          Length = 213

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 72/211 (34%), Gaps = 19/211 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  + E+ + +    + + GL  T+  +  +R     +      E++ KI    N     
Sbjct: 12  LKYLMEKKSGSVKAFSEEIGLAYTTVRSILERGVFNAK-----VENVIKICNGLNIRPED 66

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           ++D+  +    ++ +   +  +      S G      +   N  + +             
Sbjct: 67  IMDIKQTKAIESQLETLPVKKIPVVSKISAGMPI---YTEENLVDYIYFSTKNLNP---- 119

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
               ++   +    SM  L+ +GD++++     V  G   ++     +   K +    G 
Sbjct: 120 --DKEEFGLQVSGDSMNKLFDEGDVVVVEKDSIVENGQLGVVMINGYNGTVKRV-RYNGD 176

Query: 192 SIDLMSL--NCCYPVDTVEMSD-IEWIARIL 219
            I L+    N  +        D ++ + R++
Sbjct: 177 QIILIPESNNPNHYPQVYGKDDEVKIVGRVV 207


>gi|149276297|ref|ZP_01882441.1| transcriptional regulator [Pedobacter sp. BAL39]
 gi|149232817|gb|EDM38192.1| transcriptional regulator [Pedobacter sp. BAL39]
          Length = 258

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 20/224 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + ++   T    A   G+  +     +    E     P  + + KI    + 
Sbjct: 3   NISANLKYLRKKKGHTQQQFADAMGIKRSLIGAYEEDRAE-----PKYDLLKKIAEYFDL 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYF---PPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           TI + ++   +D    + K +   L               +         +         
Sbjct: 58  TIDEFINETVNDNWKPKPKSQGSNLRILSISVDKDDNENIEMVPVKASAGYLNGFSDPQY 117

Query: 125 SPHNGIYAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKP 175
                 + +             +    SMLP  + G I++   L++   V  G+  +I  
Sbjct: 118 IKELPKFQLPLPFLRQGTFRAFEIMGDSMLP-IQPGSIILAEYLDNWNDVKVGETYIIIS 176

Query: 176 RTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +   +V K      +  + + L+S N  Y   TV   DI  I +
Sbjct: 177 KNEGVVYKRAGNKFKENKELKLISDNKVYDPYTVSAEDILEIWK 220


>gi|295100758|emb|CBK98303.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Faecalibacterium prausnitzii L2-6]
          Length = 208

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 51/214 (23%), Gaps = 18/214 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +    +   LT   +A    +   + ++ +        R     +  K L  T    
Sbjct: 2   GNYLADRRKALGLTQKEIAELVDVSEATVSRWESGE-IANMRRDRIAAYAKALKTTPS-- 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              +    S  +               P          ++   N  + + + +       
Sbjct: 59  --FIMTGDSADKELPAGATLYNAQNVAPLLGTVRAGMPMYAEENIEDYIPIRQT------ 110

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKG-DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 +      +  SM        D +++    +V  G   ++     +   K     
Sbjct: 111 ---DGAKYFWLNIRGDSMNAAGMDEGDQILVREQPEVENGQLAVVMVNGNEATVKYFRRE 167

Query: 189 RGRSI-DLMSLNCCYPVDTVEMSD--IEWIARIL 219
               I    S N  +     ++    +     ++
Sbjct: 168 GDLVILTPKSFNPVHQPQIYDLKKMPVRIAGLVV 201


>gi|170692277|ref|ZP_02883440.1| transcriptional repressor, LexA family [Burkholderia graminis
           C4D1M]
 gi|170142707|gb|EDT10872.1| transcriptional repressor, LexA family [Burkholderia graminis
           C4D1M]
          Length = 220

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 67/213 (31%), Gaps = 19/213 (8%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSA-------NSAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I  L    F    T  +     P +        G         G+   
Sbjct: 54  GVIELAAGASRGIRLLPSQDFGQDGTQHQFTLPHPSIMQLSLPLIG-----RVAAGSPIL 108

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 109 AQEHIAQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKRSEAKDGQIIIAR- 167

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
              D+  K L  R    I+L++ N  Y    VE
Sbjct: 168 LGDDVTVKRLKRRPNG-IELIAENPDYENIFVE 199


>gi|148727133|ref|YP_001285627.1| putative cI repressor [Aeromonas phage phiO18P]
 gi|110349268|gb|ABG73156.1| putative cI repressor [Aeromonas phage phiO18P]
          Length = 238

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 20/211 (9%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79
              AR+A +     +  KR+  EG    P  +    +  A   T   L+           
Sbjct: 30  RAFARRADMSD---SGLKRYLYEGTI--PPIDRALNLARAGGVTFDWLVFGIGEAGSSAR 84

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------EIRSPHNGIYAI 133
                    ++         +           G+  N    P                  
Sbjct: 85  TNPPIAPASDVQGFQVTEEFTTIPAYQVFASAGHGANITDEPLAEPMAFRTDWLRREGFD 144

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             +    + +  SM P    GD++++         D L +    G +  K L    G  +
Sbjct: 145 PAKMAVIRAKGDSMEPTINDGDVILVRLKNGEAPRDGLYVLRLDGGLFVKRLQFDLGG-V 203

Query: 194 DLMSLNCCYPVDTV---EMSDIEWIARILWA 221
            ++S N  Y    +   E+++++ + R++WA
Sbjct: 204 RIISDNPLYKSRDLSKAELAELDLVGRVVWA 234


>gi|294084070|ref|YP_003550828.1| LexA repressor [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663643|gb|ADE38744.1| LexA repressor [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 211

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 61/223 (27%), Gaps = 26/223 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPST 55
           M +    ++ + +      H++ PS   +    GL   +  ++      E     R P+ 
Sbjct: 1   MLTRKQSELLDYLTTHLATHDVPPSFDEMRNALGLASKSGIHRLVSGLEERGYIRRLPNR 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
               +IL                       +   +       +        G    G   
Sbjct: 61  ARAIEILRPAG-------------------EPSAMANAVAAAADIIALPFLGRIAAGTPI 101

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
             +  P  +           +    +    SM+     +GD +++  A   + G+ ++  
Sbjct: 102 EALSDPTRQLEVPASMIGNGEHFALEIVGDSMIDAGILEGDTVVIERANTASHGEIIVAL 161

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
               +   K L+      I L + N  Y         +E   +
Sbjct: 162 INKQEATLKTLLKEP-GRIGLEAANPQYETRYFSTDAVEVQGK 203


>gi|261379287|ref|ZP_05983860.1| putative repressor protein [Neisseria subflava NJ9703]
 gi|284797724|gb|EFC53071.1| putative repressor protein [Neisseria subflava NJ9703]
          Length = 228

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    S    +
Sbjct: 18  QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPDS 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134
           E  +                            G+         I +     Y I+     
Sbjct: 73  EAPKATATDTLGNPVDIDEFVFVPRYDIQAAAGHGQLVGDEQPIFAMAFRRYWIENYVTR 132

Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N        D L +     +++ K L    G  
Sbjct: 133 DIKNLSVISVKGDSMEGVLNDGDTILINHGQTT-PRDGLYVLRLNENLLVKRLQLIPGGI 191

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           ++++S N  YP   +++     D+  I R+ W
Sbjct: 192 VNVISANEAYPTFEIDLKNPTDDVAIIGRVEW 223


>gi|87200194|ref|YP_497451.1| putative phage repressor [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135875|gb|ABD26617.1| putative phage repressor [Novosphingobium aromaticivorans DSM
           12444]
          Length = 213

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 15/218 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
                A+D + ++  +  S ++R  G +     +  R    G  R    +    +     
Sbjct: 2   DDARRALDELIQQRGVNYSSVSRLLGRNAAYIQQYIRR---GSPRQLDEQDRSVLARFFG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVGVPEIRS 125
               + +    +       +   +PLL    S   G             ++   +  + +
Sbjct: 59  VD--EKVLGAPARRSGPVVELVHVPLLNVEASAGHGALAEMEAKSAQFGFDEKWLRRLTA 116

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKV 184
                 +I            SM P    GD ++++    Q    D + +      +  K 
Sbjct: 117 SKASSLSI------IAVHGDSMEPTLHDGDEVMVDLGDGQSRLRDGIYVLRMDDMLSVKR 170

Query: 185 LISRR-GRSIDLMSLNCCYPVDT-VEMSDIEWIARILW 220
           +     G+   ++S N  YP    +E   +  + R+LW
Sbjct: 171 IALEPQGKRASVLSDNPAYPSWRGLEKRTLNIVGRVLW 208


>gi|57866830|ref|YP_188488.1| LexA repressor [Staphylococcus epidermidis RP62A]
 gi|251810773|ref|ZP_04825246.1| LexA repressor [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876227|ref|ZP_06285094.1| repressor LexA [Staphylococcus epidermidis SK135]
 gi|71153807|sp|Q5HPK2|LEXA_STAEQ RecName: Full=LexA repressor
 gi|57637488|gb|AAW54276.1| LexA repressor [Staphylococcus epidermidis RP62A]
 gi|251805701|gb|EES58358.1| LexA repressor [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295252|gb|EFA87779.1| repressor LexA [Staphylococcus epidermidis SK135]
 gi|329725103|gb|EGG61597.1| repressor LexA [Staphylococcus epidermidis VCU144]
 gi|329735895|gb|EGG72174.1| repressor LexA [Staphylococcus epidermidis VCU028]
 gi|329736637|gb|EGG72903.1| repressor LexA [Staphylococcus epidermidis VCU045]
          Length = 206

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 31/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +    +I++ I ++ +     PS   +    GL   ++ +                
Sbjct: 1   MRELTKRQSEIYDYIKKIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L                +  + +  E  +      P          +    N  
Sbjct: 50  ------LEEKGYIRRDPTKPRAIEIVSEQLDEVNVEETIHVPVIGKVTAGVPITAVENIE 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
               +PE  +  +      +          SM       GD +I+ S      GD ++  
Sbjct: 104 EYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 158

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K     +     L   N       ++   +  + +++
Sbjct: 159 TEDEEATVKRFYKEKN-RYRLQPENSTMEPIYLDN--VIVVGKVI 200


>gi|311030180|ref|ZP_07708270.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidase) [Bacillus sp. m3-13]
          Length = 203

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 55/219 (25%), Gaps = 34/219 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            + I + I +  +     PS   +    GL  +S       R   +G  R   T+     
Sbjct: 7   QQDILDYIKKEVQAKGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIRRDPTKPRA-- 64

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                 E +          P          +    N  +   +P
Sbjct: 65  ------------------IEIMEDELVPKISAVNVPIIGKVTAGQPITAIENVEDYFPLP 106

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +         A   Q    +    SM       GD +I+      N GD ++      + 
Sbjct: 107 D------RYVAPDEQVFMLEVMGDSMIEAGILDGDYVIVRQQQSANNGDIVVAMTEEDEA 160

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K     +   I L   N       V    +  + +++
Sbjct: 161 TVKRFFKEKD-YIRLQPENSTLEPIIVRN--VSILGKVI 196


>gi|237797534|ref|ZP_04585995.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020384|gb|EGI00441.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 243

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K                         +      +Y     + G   + +         
Sbjct: 65  GPKHPNEPAHEHTAGDTRMVIQQTRNVLRGDVEIQIYMEVESTHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQTMGI--DPKSCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSAEDIDREKIRILGWIFWWS 231


>gi|330718868|ref|ZP_08313468.1| LexA repressor [Leuconostoc fallax KCTC 3537]
          Length = 211

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 59/220 (26%), Gaps = 28/220 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              ++   I          P+   +    GL  +S      +R   +G  +  + +   +
Sbjct: 7   KQIQVLRFIHEAQTNKGYPPTVREIGEAVGLSSSSTIHGHIERLVKKGYLKKDTKKPRAR 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +  T             +          IP+L    +G             N      +
Sbjct: 67  AIEVT---------TSGLEILGVSTTPGRIPVLGVVTAGQPILAVE-----ENATEFFPI 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+  +                 +  SM+ +    GD +I+      + G+ ++      +
Sbjct: 113 PDDLAQF------DGDLFMLNVRGDSMIDMGILSGDKVIVRKQDNADNGEVVVAMNEDNE 166

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +  K           L   N       ++   +  + +++
Sbjct: 167 VTVKRFFK-EADHYRLQPENTTMAPIILQS--VTVLGKVV 203


>gi|270157680|ref|ZP_06186337.1| putative phage repressor [Legionella longbeachae D-4968]
 gi|269989705|gb|EEZ95959.1| putative phage repressor [Legionella longbeachae D-4968]
          Length = 228

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 66/226 (29%), Gaps = 12/226 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M     +KI   I        LT   LA     L  +  N  +R            + + 
Sbjct: 1   MDMSIKEKIGNRIKNERTAKGLTRKALAELTESLKVSRINNYERGERTPGPNE--IKQLA 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + L  +   +  L D      +        IPLL +  +     +   +           
Sbjct: 59  EALEVSPAFLMCLSDDRQGKLKQAPGLGSLIPLLNYNQACKPELYIEEIKNESYSEKVTL 118

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTG 178
           +P     +     I       + +D SM P  R  D +I +     + GD ++       
Sbjct: 119 IPISSLLYER---IGKNAFALEIKDDSMSPELRVNDTVIADPDTPPSPGDFVIAKLEHNN 175

Query: 179 DIVAKVLISRR----GRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           +++ +              +L++LN  +    V        I  ++
Sbjct: 176 EVIIRKYKQLSAAKIANEFELIALNQDWASIHVGAETHGVIIGTLV 221


>gi|222153050|ref|YP_002562227.1| phage repressor-like protein [Streptococcus uberis 0140J]
 gi|222113863|emb|CAR42005.1| putative phage repressor-like protein [Streptococcus uberis 0140J]
          Length = 230

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 21/230 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FS K+    +  + ++H ++   L +K G++  + +  ++       +      + +I 
Sbjct: 1   MFSGKQ----LKTIRQKHQMSQESLGQKLGVNKMTISNWEKGKNVPNQKH--LNQLLEIF 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               ++      +     + T   ++++                        +       
Sbjct: 55  HLDADSFNPYQAIILPYKQLTSLNQEKVVTYSKELLEEQNKIVQLSQSQKKLYVYRVYES 114

Query: 123 IRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           + +     Y                 D        SM P Y  G+++++        G  
Sbjct: 115 LSAGTGFSYFGDGNYDEVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQEGFDYDG-A 173

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           +      G    K +       + L+SLN  Y        +    I +I+
Sbjct: 174 IYAVEWDGQTYIKKVYREEDG-LRLVSLNKKYSDKFAPFDENPRIIGKII 222


>gi|296110528|ref|YP_003620909.1| putative phage repressor [Leuconostoc kimchii IMSNU 11154]
 gi|295832059|gb|ADG39940.1| putative phage repressor [Leuconostoc kimchii IMSNU 11154]
          Length = 230

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 27/230 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-- 68
             +    +  N+ P+ LA+  G+  +S ++        +        I K L        
Sbjct: 6   SRLKIAMDHKNIKPADLAKMTGIGKSSISQWLAGKYSAKQDNIFV--IAKTLNINPSWLI 63

Query: 69  ------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------------ 110
                   + +     +      KE++  +  +              P            
Sbjct: 64  GADVPMNDESILDKIYNVANKISKERQEKVYKYTKQQYNEQNKIVQMPIKREVVISGAVS 123

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G         E    + G   I   D        SM P +    I+ ++   +V  G  
Sbjct: 124 AGTGEYLGDGHEETVAYEGE--IPPHDFAVIVNGDSMEPTFADKQIIFVDKTKEVFNGQF 181

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           ++          K  +S    +  L+SLN  Y    ++ + ++     ++
Sbjct: 182 IIADYDQQ-AYVKKFMSDENGA-RLVSLNPKYNDMPLDENHELSVFGVVV 229


>gi|253755127|ref|YP_003028267.1| DNA-binding protein [Streptococcus suis BM407]
 gi|251817591|emb|CAZ55338.1| putative DNA-binding protein [Streptococcus suis BM407]
          Length = 230

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 63/224 (28%), Gaps = 20/224 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +         + S LA K  ++ +S+   +      +    + + +  +L       
Sbjct: 4   GKRLKERRITLGYSQSELADKLHINRSSYFNWENEKT--KPNQSNLKQLAILLDVPETYF 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------SGVFPTGNKWN- 116
                +  +  + + + ++++           G  +                  G     
Sbjct: 62  ESEYKIVNTYLQLSLQNQEKVEKYAEELLQEQGIHNKIIPLFAVEVLSEIQLFAGPGEGL 121

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                         Y     D        SM P+Y+ G++ ++ S      G  +     
Sbjct: 122 YDEFETETVYSEDEYT--GFDIATWISGNSMEPVYKDGEVALIRSTGFDYDG-AVYALNW 178

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G +  K L         ++S+N       +    +I  + +++
Sbjct: 179 NGSLYIKKLYREEDG-FRMVSINPDVAERFIPFEDEIRIVGKVV 221


>gi|330974358|gb|EGH74424.1| prophage PSPPH03, Cro/CI family transcriptional regulator
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 290

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 64/261 (24%), Gaps = 56/261 (21%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----------------------- 55
              L+   +A +AG+ P + N   +       R+ +                        
Sbjct: 28  ELKLSQKKIADEAGMTPAAVNLYFKGINPLNTRFAAVLSRMLQEPVERFSPRLAKEIASL 87

Query: 56  -----------------ESIFKILAATNETICQLLDLPFSDGRTTEK----KEKEIPLLY 94
                            + I K          Q +     +   +      K  +     
Sbjct: 88  TSAAKPAASQSSVDIVQQMIAKHGKNLPADARQKIADAVEEVAASVAGANIKGADYSRPG 147

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIR----------SPHNGIYAIQTQDTRHKTQD 144
                            G        PE+                 +             
Sbjct: 148 LVGDEVWIAHYDVRAAMGGGQIPSEYPEMLQDIRVSPKHLREMGVTFKEHFHLKMITGWG 207

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P  +  D L+++  ++   GD + +      +  K L  +      ++S N  +  
Sbjct: 208 QSMAPTIKDRDPLLVDVTVREFTGDGIYLFSYDEMLYVKRLQKKGKDRFKMISDNKHHDP 267

Query: 205 DTVEMSDIEWIARI--LWASQ 223
           + + + D   +AR+  +W  Q
Sbjct: 268 EDIRVDDTHILARVIYVWNGQ 288


>gi|296139522|ref|YP_003646765.1| transcriptional repressor, LexA family [Tsukamurella paurometabola
           DSM 20162]
 gi|296027656|gb|ADG78426.1| transcriptional repressor, LexA family [Tsukamurella paurometabola
           DSM 20162]
          Length = 236

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 25/223 (11%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTES 57
           +   K++ E I R        PS   +  + GL  TS   ++ +     G   R P+   
Sbjct: 27  TRRQKQVLEVIRRSVRDRGYPPSIREIGDEVGLTSTSSVAHQLRTLERLGFLHRDPNRPR 86

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                      +    +      +   + E+ +P   F P          +         
Sbjct: 87  A--------VNVQGTEERTAQVIQRVMEDEERMPEPAFVPVLGRIAAGGPILAEEAVEEI 138

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P            +      K    SM+      GD +++        GD +     
Sbjct: 139 FPLPRELVG-------EGSLFLLKVVGESMVDAAICDGDWVVVRQQSVAENGDIVAAMLD 191

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K    R G+ + LM  N  +       +D   + +++
Sbjct: 192 -GEATVKTF-RRTGKDVWLMPHNPAFDPIH--GNDAVVLGKVV 230


>gi|91783348|ref|YP_558554.1| LexA repressor [Burkholderia xenovorans LB400]
 gi|296157707|ref|ZP_06840541.1| transcriptional repressor, LexA family [Burkholderia sp. Ch1-1]
 gi|123168539|sp|Q13ZI7|LEXA_BURXL RecName: Full=LexA repressor
 gi|91687302|gb|ABE30502.1| SOS-response transcriptional repressor, LexA [Burkholderia
           xenovorans LB400]
 gi|295891953|gb|EFG71737.1| transcriptional repressor, LexA family [Burkholderia sp. Ch1-1]
          Length = 216

 Score = 88.3 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 59/213 (27%), Gaps = 23/213 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G    +                S E
Sbjct: 1   MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSAN----------------SAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                     +       L             G    G+   
Sbjct: 45  EHLRALARKGVIELAAGASRGIRLLAGPEDSPHQFTLPHASIMQLSLPLIGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 105 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKKSEAKDGQIVIAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
              D+  K L  R    ++L++ N  Y    VE
Sbjct: 164 LGDDVTVKRLKRRPNG-LELIAENPDYENIFVE 195


>gi|289550873|ref|YP_003471777.1| SOS-response repressor and protease LexA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658374|ref|ZP_07911246.1| repressor LexA [Staphylococcus lugdunensis M23590]
 gi|289180405|gb|ADC87650.1| SOS-response repressor and protease LexA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496703|gb|EFU85026.1| repressor LexA [Staphylococcus lugdunensis M23590]
          Length = 207

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 61/227 (26%), Gaps = 34/227 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWP 53
           M   +    +I++ I  + +     PS   +    GL   ++ +       E     R P
Sbjct: 1   MRELTKRQSEIYDYIKHIVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +I++  N+    +                        P          +    N
Sbjct: 61  TKPRAIEIVSEHNDAAIDMEGTIH------------------VPVIGKVTAGIPITAVEN 102

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                 +PE  +  +      +          SM       GD +I+ S      GD ++
Sbjct: 103 VEEYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIV 157

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K     +     L   N       ++   +  + +++
Sbjct: 158 AMTDEDEATVKRFYKEK-HHYRLQPENSSMEPIYLDS--VSVLGKVI 201


>gi|210621325|ref|ZP_03292587.1| hypothetical protein CLOHIR_00530 [Clostridium hiranonis DSM 13275]
 gi|210154808|gb|EEA85814.1| hypothetical protein CLOHIR_00530 [Clostridium hiranonis DSM 13275]
          Length = 212

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 52/220 (23%), Gaps = 25/220 (11%)

Query: 4   FSHKKI--WEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
            + K+I   E I     +    P+   +     L  TS   S                + 
Sbjct: 5   LTDKQIAILEFIKSEISKKGYPPAVREICDAVSLRSTSTVHSH------------LNKLE 52

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K+     +             R  +        +   P          +F   N    + 
Sbjct: 53  KLGYIRKDPTKPRAIEVLDKARDEDDVMGLHQEMINLPLIGQITAGEPIFAEQNIEEYIP 112

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P               +   + +  SM+      GD ++++       G  +       
Sbjct: 113 LPASLVSG-------KDNFVLRVKGESMINAGILDGDYVVVDKKNTAANGTMVAALVENE 165

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
               K         I L   N        E S ++ I  +
Sbjct: 166 KATVKTFYK-EDGKIRLQPENEFMEPFIFEDSQVQIIGVV 204


>gi|317493024|ref|ZP_07951448.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919146|gb|EFV40481.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 255

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 58/220 (26%), Gaps = 9/220 (4%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I    ++  +  S  A     +  +   S       R      E +   +   ++    
Sbjct: 32  RIKAALKKQGIEISEPAIWKWRNGAAIPDSTNILALSRWLNVRAEWLEYGVEPMSQDAAI 91

Query: 72  LLDLPFSDGRTTEKKEK--EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------VPEI 123
               P    +         +             +F S     G+            +   
Sbjct: 92  AQKEPDMPPQNQWSGVDVWDSNTPLGDDEVEIPYFKSIELAAGHGCVNNEDHNGFKLRFS 151

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           ++      A             SM P+  +G  + ++ A +      +        +  K
Sbjct: 152 KATLRRAGADPACTIAFPVHGHSMEPVIPEGTTVTVDLANKRIIDGAIYAIDHGDLLRVK 211

Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
            L     + + + S N   +P +  +   +E I R++  S
Sbjct: 212 QLFRLPNKKLSIRSYNKIDFPDEEADQDSVEIIGRVIHYS 251


>gi|167463701|ref|ZP_02328790.1| hypothetical phagelike protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384406|ref|ZP_08058092.1| transcriptional regulator-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150764|gb|EFX44224.1| transcriptional regulator-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 217

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 22/219 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            E I  + E+  LT   LA   GL   T+  K +         +P  + I ++      +
Sbjct: 5   GEIIKLLREQRGLTQQQLANILGLKTYTTITKWESGDN-----FPKGKDIKRLSEFFKVS 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              +L L     ++     K     ++P S S G        T +   T+ +P+      
Sbjct: 60  SDYILGLE----KSNSCMLKTSDYPFYPISISAGQPIEVNTITEDNVETITLPDDM---M 112

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKVLI 186
           G +A        +    SM  +     ++++      ++N GD ++      +   K   
Sbjct: 113 GKWAGSEDIYIMRVNGESMNKVIPHNSLIVVKNIELSELNNGDIVIY-SNGNEYSVKRFY 171

Query: 187 SRR-GRSIDLMSLN--CCYPVDTVE---MSDIEWIARIL 219
           + +    +     +    +    V    +S+I+   +++
Sbjct: 172 NDKVNSRVIFRPDSTDPSFTDYLVSYGNISEIKIHGKVV 210


>gi|330939437|gb|EGH42793.1| putative transcriptional regulator [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 271

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 64/250 (25%), Gaps = 44/250 (17%)

Query: 12  AIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            + +  E  +LT   +A   G    +  ++     I       +  ++ K       +  
Sbjct: 24  YLAKKREDKSLTQERIADLCGWAGQSVVSQYLNGKIP-----LNFNALSKFSNVLGFSYE 78

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLY--------FPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           Q+        +           L            + +    +     T    + V +P 
Sbjct: 79  QVSPRLARFIKYPVVGAPFSMDLQEGDLDGPPSASAHALIPIEEWDDKTPLDPDEVELPF 138

Query: 123 -------------------------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                                     +                     SM P+   G  +
Sbjct: 139 FKEVELSAGKGSEVMLETNGRMLRFGKRTLQKKGIDPNTAGCVPVHGNSMEPVLPDGSTV 198

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDI 212
            +++A+      ++      G +  KVL    G  + L S N   +P +  +       I
Sbjct: 199 GVDTAVTAIQDGKMYAIDHDGQLRVKVLYRLPGSGLRLRSYNAEEHPDERYDGDYVRDHI 258

Query: 213 EWIARILWAS 222
             I ++ W S
Sbjct: 259 RVIGKVFWYS 268


>gi|297617268|ref|YP_003702427.1| transcriptional repressor, LexA family [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145105|gb|ADI01862.1| transcriptional repressor, LexA family [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 209

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 64/220 (29%), Gaps = 36/220 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSK-RFGIEGRNR-WPSTESIFK 60
            + I   I     R    PS   + +  GL   ++ +    +   +G  R  P+     +
Sbjct: 14  EQTILSFIKEEVRRKGYPPSVREIGKAVGLKSSSTVHAYLCQLEEKGYLRKDPAKPRAIE 73

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L +                          P +   P        + +    N   ++ +
Sbjct: 74  VLDS--------------------GSALSDPQIVEVPIVGKVAAGTPILAAQNLDGSLPL 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P              +      Q  SM      +GDILI+ S  +   G+ ++      +
Sbjct: 114 PLDLLGS-------GEHFLLTVQGDSMVEAGILEGDILIVKSQPRAENGEIVV-AMIEDE 165

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K    R    I+L   N       V    +E I +++
Sbjct: 166 ATVKRFFKR-DGYIELRPENSHMQPIIVT-GQVEVIGKVI 203


>gi|330970607|gb|EGH70673.1| putative transcriptional regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 283

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 64/250 (25%), Gaps = 44/250 (17%)

Query: 12  AIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            + +  E  +LT   +A   G    +  ++     I       +  ++ K       +  
Sbjct: 36  YLAKKREDKSLTQERIADLCGWAGQSVVSQYLNGKIP-----LNFNALSKFSNVLGFSYE 90

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLY--------FPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           Q+        +           L            + +    +     T    + V +P 
Sbjct: 91  QVSPRLARFIKYPVVGTPFSMDLQEGDLDGPPSASAHALIPIEEWDDKTPLDPDEVELPF 150

Query: 123 -------------------------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                                     +                     SM P+   G  +
Sbjct: 151 FKEVELSAGKGSEVMLETNGRMLRFGKRTLQKKGIDPNTAGCVPVHGNSMEPVLPDGSTV 210

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDI 212
            +++A+      ++      G +  KVL    G  + L S N   +P +  +       I
Sbjct: 211 GVDTAVTAIQDGKMYAIDHDGQLRVKVLYRLPGSGLRLRSYNAEEHPDERYDGDYVRDHI 270

Query: 213 EWIARILWAS 222
             I ++ W S
Sbjct: 271 RVIGKVFWYS 280


>gi|261365316|ref|ZP_05978199.1| putative repressor protein [Neisseria mucosa ATCC 25996]
 gi|288566246|gb|EFC87806.1| putative repressor protein [Neisseria mucosa ATCC 25996]
          Length = 230

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 23/214 (10%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    S     
Sbjct: 18  QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPNA 72

Query: 84  EKKEKEIPLLYF------PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ--- 134
           +                                 G+         + +     Y ++   
Sbjct: 73  QVPSSTAVAYDTLGNPVDIDEFVFVPRYDIQAAAGHGRLVGDEKPVFTMAFRRYWVENYV 132

Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                  +    +  SM  +   GD +++N A      D L +     +++ K L    G
Sbjct: 133 TRDTKNLSVISVKGDSMEGVLNDGDTILINHAETA-PKDGLYVLRLNENLLVKRLQLVPG 191

Query: 191 RSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220
             ++++S N  YP   +++     D+  I R+ W
Sbjct: 192 GVVNVISANEAYPTFEIDLNNLTDDVAIIGRVEW 225


>gi|15643840|ref|NP_228888.1| lexA repressor [Thermotoga maritima MSB8]
 gi|6225616|sp|O33927|LEXA_THEMA RecName: Full=LexA repressor
 gi|4981627|gb|AAD36159.1|AE001768_8 lexA repressor [Thermotoga maritima MSB8]
 gi|2645227|gb|AAB87145.1| LexA [Thermotoga maritima MSB8]
          Length = 197

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 59/224 (26%), Gaps = 38/224 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + ++  +   I+   E++   PS   +AR+  + P       R             
Sbjct: 1   MKDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA----------- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                    +    +                    +    P                  +
Sbjct: 43  -------LLHLIALEKKGYIERKNGKPRALRISKSIRNKIPLIGEIRAGEKREAIEYLED 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            + +PE                  K +  SM       GD++++        GD +    
Sbjct: 96  YIEIPESFLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVAAMV 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K    +RG +++L   N            ++ + +++
Sbjct: 150 D-GEVTLKKFY-QRGDTVELRPANREMSSMFFRAEKVKILGKVV 191


>gi|323517351|gb|ADX91732.1| S24 family peptidase [Acinetobacter baumannii TCDC-AB0715]
          Length = 218

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 18/223 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H++I +      +   L    LA   G    +  K            P TES+ K+ 
Sbjct: 1   MELHERIVQK----MKEKKLRQVDLALATGKSKVAVLKWINGENV-----PKTESLKKLA 51

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                +   L+              +++P    P             P         + E
Sbjct: 52  ELFGVSDSWLMHGTEEKLDNNVVLSEKMPSDGRPVPVISWVAAGSFSPIETVLKDTEIEE 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTG- 178
              P+             K    SM P +  GD + +N  IQ       D +++      
Sbjct: 112 YLPPNRRC---GKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVACAGDS 168

Query: 179 DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219
           +   K LI     S   L  LN  +P   +++  D   + +++
Sbjct: 169 EATFKKLIIEGEGSSKFLEPLNPDWPDKIIKLSEDCRLVGKVV 211


>gi|321156793|emb|CBW38777.1| Putative helix turn helix DNA binding protein [Streptococcus
           pneumoniae]
          Length = 254

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 14/217 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    E   L+ S LA   G+   S+   +      +    +   + +IL          
Sbjct: 34  LKEKRESQGLSQSQLASSLGISRASYFNWESGKT--KPNQNNLSKLSEILNVDPRYFESE 91

Query: 73  LDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            ++  +  + TE+ ++                       F             T    + 
Sbjct: 92  YEIVETYLKLTERNQEATLHYATELLNKQNAKVVEIPERFAYKVYEKLSAGTGTAYFDDG 151

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                        D        SM P Y  G + ++        G  +      G    K
Sbjct: 152 NYDTVYFNHQFDYDFASWVFGNSMEPTYEDGSVALIKQTGFDYDG-AIYAIDWDGQTYIK 210

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
            +       + L+SLN  Y        +    I +I+
Sbjct: 211 KVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 246


>gi|183217354|gb|ACC59273.1| UV resistance protein UmuD [Streptococcus pneumoniae]
          Length = 227

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 14/217 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    E   L+ S LA   G+   S+   +      +    +   + +IL          
Sbjct: 7   LKEKRESQGLSQSQLASSLGISRASYFNWESGKT--KPNQNNLSKLSEILNVDPRYFESE 64

Query: 73  LDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            ++  +  + TE+ ++                       F             T    + 
Sbjct: 65  YEIVETYLKLTERNQEATLHYATELLNKQNAKVVEIPERFAYKVYEKLSAGTGTAYFDDG 124

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                        D        SM P Y  G + ++        G  +      G    K
Sbjct: 125 NYDTVYFNHQFDYDFASWVFGNSMEPTYEDGSVALIKQTGFDYDG-AIYAIDWDGQTYIK 183

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
            +       + L+SLN  Y        +    I +I+
Sbjct: 184 KVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 219


>gi|110633546|ref|YP_673754.1| putative phage repressor [Mesorhizobium sp. BNC1]
 gi|110284530|gb|ABG62589.1| putative phage repressor [Chelativorans sp. BNC1]
          Length = 230

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 24/217 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKILAATN 66
            I E ID       LT S  A+ AGL  ++    +R    G+     ST ++ K+     
Sbjct: 4   DILERIDERLAEVGLTESRAAKMAGLSDSAIRDMRRAVKSGKEDAGVSTRTLAKLAPVLQ 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   LL            + + +P++ +  +G+    +    P          PE    
Sbjct: 64  TSAEWLLTG-----GPEGIRSRTVPIMGYLGAGAEVEPEYEQVP----------PEGLDQ 108

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVA 182
            +  +++  +    K +  SMLP+Y+ G ++I+ S  +       G+   ++   G    
Sbjct: 109 VDVPFSVPDEMIAFKVRGDSMLPVYKDGAVIIVYSEQKKPLHSFYGEEAAVRTSDGRRFI 168

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K ++     +++L+S N       +E   +EWI  I 
Sbjct: 169 KTIMRGPDDTVNLLSHNAS----PIEGVRLEWIGEIF 201


>gi|255066737|ref|ZP_05318592.1| putative repressor protein [Neisseria sicca ATCC 29256]
 gi|255049065|gb|EET44529.1| putative repressor protein [Neisseria sicca ATCC 29256]
          Length = 228

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL         T
Sbjct: 18  QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGEPFPNT 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134
           E  +                            G+         + +     Y I+     
Sbjct: 73  EPPKATAYDTLGNPVDIDEFIFVPRYDIHAAAGHGQLVGDEKPMFTMAFRRYWIENYVTR 132

Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N +      D L +     +++ K L    G  
Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDTILINRSETT-PRDGLYVLRINENLLVKRLQVIPGGI 191

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           ++++S N  YP   +++     D+  I R+ W
Sbjct: 192 VNVISANEAYPAFEIDLNKMTEDVAIIGRVEW 223


>gi|311739627|ref|ZP_07713462.1| repressor LexA [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305443|gb|EFQ81511.1| repressor LexA [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 234

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 54/217 (24%), Gaps = 12/217 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I   I          PS   +   AGL  TS    +   +E +        + +   
Sbjct: 21  QRRILNVISDAVMLRGYPPSIREIGDAAGLQSTSSVAYQLKQLEEK------GFLRRDPN 74

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  + L+      +   K  K    +             G    G         + 
Sbjct: 75  KPRAVDVRHLNTDDGANKPGRKPAKSEQQVPEDAGAVSYIPVVGRIAAGAPITAEENVDT 134

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P              +    SM       GD +I+ S      G+ +       +   
Sbjct: 135 YFPMPDEVVGGGDLYMLQVVGDSMQDAGILDGDWVIIRSQSVAEEGEFVAALLEGSEATV 194

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K         + L+  N  Y        D E + +++
Sbjct: 195 KEFHRDSSG-VWLLPHNEAYAPI--NGDDAEIMGKVV 228


>gi|328955562|ref|YP_004372895.1| SOS-response transcriptional repressor, LexA [Coriobacterium
           glomerans PW2]
 gi|328455886|gb|AEB07080.1| SOS-response transcriptional repressor, LexA [Coriobacterium
           glomerans PW2]
          Length = 211

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 30/227 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKRFGIEGR--NRWP 53
           M   +   ++I++ I          PS   +A   GL  P++ +       +     R  
Sbjct: 1   MRKITKRQQQIYDFIRSYQLEKGYPPSVREMAAAVGLSSPSTVHAHLSALEDHGFIKRDA 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     ++      +      +   D  +                         +    N
Sbjct: 61  TKPRALELFNEDGSSAKLAEVIEKPDRGSISLPLV-----------GRVAAGMPILAEQN 109

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +T  +P          A  +     +    SM+      GD +++        G+ ++
Sbjct: 110 VEDTFTLPTEI-------ATDSSSFILEVHGDSMIDAGILNGDYIVVREQSSAMNGEIIV 162

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               + +   K         + L   N       V   D   + +++
Sbjct: 163 AMIDS-EATVKTFYKEP-GRVRLQPANDAMEPIYVT--DPVILGKVV 205


>gi|284009387|emb|CBA76574.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 248

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 10/218 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-----EGRNRWPSTESIFKILAAT 65
           + ID +A++  +  SG A    L+  S   S            R  W       K     
Sbjct: 31  KIIDSLAKQ-GIRVSGPAVWKWLNAESIPDSTNILALSDWLNVRPEWLEYGRGAKNKNID 89

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              + Q      +D  ++   E EIP        + G          +   T+       
Sbjct: 90  GTPLNQASYAYCADEVSSADDEVEIPYYKSIELAA-GHGSYANQTETDFCRTLKFSRSIL 148

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            + GI  + ++         SM P+   G ++ +++  +      +    +   +  K+L
Sbjct: 149 NNYGI--LPSEAMSFPVHGDSMSPVIPSGAVVTISTGHKKIVDGAIYAIKQADLLRVKIL 206

Query: 186 ISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
                  + + S N   YP +   + DIE I R+   S
Sbjct: 207 RRLPNSKVIIKSYNSIDYPDEEANLDDIEIIGRVFNWS 244


>gi|197117030|ref|YP_002137457.1| LexA-like helix-turn-helix transcriptional regulator [Geobacter
           bemidjiensis Bem]
 gi|197086390|gb|ACH37661.1| helix-turn-helix transcriptional regulator, LexA-related protein
           [Geobacter bemidjiensis Bem]
          Length = 209

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 60/215 (27%), Gaps = 21/215 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H +    I +      LT    A   G+     +  +     GR R PS   +  +    
Sbjct: 7   HAETGVRIKKARLALGLTQKEFAASLGIVQGFLSGIE----TGRKR-PSDTLLIALSHTF 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 L D      +       E P +   P            P G     + VP+   
Sbjct: 62  GINAQWLSDGSGESFKNQ--PGAEQPNVSRAPLLEMIPDSFPDDP-GAISRYISVPD--- 115

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKV 184
                  +             M P  R GD++I    + Q   GD +++  R G+ + + 
Sbjct: 116 -------LPEGCYAIVCYGDFMSPTIRDGDVVIFRPESEQKKSGDIIIVHNRWGEPILRR 168

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   I L   N  Y            I  ++
Sbjct: 169 Y-RVKDDEIYLAPDNPAYAPFQ-PDDGTRTIGIVV 201


>gi|15485441|emb|CAC67535.1| hypothetical transcriptional regulator [Streptococcus thermophilus]
          Length = 232

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 60/223 (26%), Gaps = 21/223 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILA------ 63
           E +    +   LT   +A + G+   +++  +R   E  + +    E + K+        
Sbjct: 5   EKLKARRKELKLTQKDIADQLGISYQAYSAWERGIKEPSKEKVNRLEQLLKVSKGYFTEI 64

Query: 64  ---ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNT 117
                  T+         +      ++++   +         +        G     ++ 
Sbjct: 65  EIVRLYNTLSNKGKNQVVEYARDLVQKEKTRQVMSVSEKLYEYHVYEKMSAGIGASVYDN 124

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                +             D        SM P Y  G + ++        G  +      
Sbjct: 125 RNYDTVYFNEELA-----HDFASWVSGDSMEPKYHNGSVALIRETGFDYDG-AVYAVVCN 178

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                K +       + L+S+N  Y    +   +    +  I+
Sbjct: 179 NQTYLKRVYREEEG-LRLVSINPKYKDIFITYDEDPRVVGIIV 220


>gi|261209042|ref|ZP_05923446.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566563|ref|ZP_06446985.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294615927|ref|ZP_06695763.1| repressor [Enterococcus faecium E1636]
 gi|260076954|gb|EEW64677.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161662|gb|EFD09540.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291591214|gb|EFF22887.1| repressor [Enterococcus faecium E1636]
          Length = 250

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 66/249 (26%), Gaps = 47/249 (18%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +     +T   LA+K G   T+ ++ +        R P  + +  +       + 
Sbjct: 8   QRLKELRAEKGITLEELAKKIGTTKTTLSRYENGE-----RSPKLQLVGLLANYFQVEMS 62

Query: 71  QLLDLPFSDGR-------TTEKKEKEIPLLYFP----------------------PSGSG 101
            L                T     ++  +  F                            
Sbjct: 63  WLSGQSDQRNSLNILPIYTQLSSPRQQKVYNFAKNELEEQNRSNVIQGNFGKAVDEDEKQ 122

Query: 102 GFFDSGVFPTGNKWNTV--GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
                G+   G+         P               D        SM P +  G+I+ +
Sbjct: 123 EVSYVGLLSAGHGCPNYDKERPFGTVTMRESQIPSHYDLAFMVNGNSMYPTFENGEIVFI 182

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--------NCCYPVDTVEM-S 210
                V  G    ++   G+   K +     R + L+SL        N  YP    +   
Sbjct: 183 KQTPNVMNGQIGAVEIN-GEAFLKKMY-VENRRLRLVSLNCECDENGNRLYPDFYADEYD 240

Query: 211 DIEWIARIL 219
           D+  I R++
Sbjct: 241 DLYVIGRVI 249


>gi|326202168|ref|ZP_08192038.1| transcriptional repressor, LexA family [Clostridium papyrosolvens
           DSM 2782]
 gi|325987963|gb|EGD48789.1| transcriptional repressor, LexA family [Clostridium papyrosolvens
           DSM 2782]
          Length = 215

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 61/221 (27%), Gaps = 25/221 (11%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGRN--RWPSTESIF 59
             ++I + + +    +   PS   +    G   T + +   +  I+     + P+     
Sbjct: 8   KQQEILDYVYKCVHENGYPPSVREICSAVGFKSTSTVHSYLQKLIDSGLLQKDPTKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           KIL                   +  K+ +     Y+           G    G     V 
Sbjct: 68  KILNR----------------ASQVKESRTSKDGYYTSREMVDVPVVGRVTAGQPILAVE 111

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                 P    +   +     + Q  SM        D +++      N GD ++      
Sbjct: 112 NITDTFPLPVDFVQNSDAFMLRIQGESMVEAGILDKDFVLVRQQSSANNGDIVVALI-GD 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K     +   I L   N       V   D+  + +++
Sbjct: 171 EATCKTFYREKD-YIRLQPQNSSMEPILV-KDDLSILGKVI 209


>gi|168186349|ref|ZP_02620984.1| LexA repressor [Clostridium botulinum C str. Eklund]
 gi|169295806|gb|EDS77939.1| LexA repressor [Clostridium botulinum C str. Eklund]
          Length = 204

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 61/222 (27%), Gaps = 42/222 (18%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR-WPSTE 56
              +I+E I          PS   + +  GL  TS      +K +R G+  R+   P T 
Sbjct: 8   KQIEIYEFIKEQIIEKGYPPSVREICKGVGLSSTSSVHGHLSKLERKGLIRRDSTKPRTI 67

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            I K                         +      +   P        + +    N  +
Sbjct: 68  EILK-------------------------ESIVPKEMVNIPILGKVTAGAPILAVENIED 102

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
           T  +     P N       +    K    SM       GD+ I+        G+ ++   
Sbjct: 103 TFPISLNFIPSN------KELFMLKVSGESMIEAGILDGDLAIIEKTNTAKNGEIVVALM 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
              ++  K       + I L   N       +E   +  + +
Sbjct: 157 D-NEVTLKRFFK-EDKHIRLQPENKSMDPIILEDDSVSIVGK 196


>gi|226227132|ref|YP_002761238.1| LexA repressor [Gemmatimonas aurantiaca T-27]
 gi|226090323|dbj|BAH38768.1| LexA repressor [Gemmatimonas aurantiaca T-27]
          Length = 202

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 45/172 (26%), Gaps = 5/172 (2%)

Query: 53  PSTESIFKILAA----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           PS E I          T       L+      R+  +      L       S      G 
Sbjct: 25  PSFEEIASQFNYNSLATVHEHLTNLERKGYIKRSYNESRAIEILPSEIYQRSVELPLLGS 84

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G     V   E  +  +G           + +  SM     R GD +++N     + 
Sbjct: 85  VAAGAPIEAVHSGETMAVPDGFLRRNGSHYVLRVRGDSMIEEHIRDGDFVVINDKQAADN 144

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++          K     R   I L   N       V   D+     ++
Sbjct: 145 GEMVIALLDGSGATVKRYYRERDGRIRLQPANETMQPLFVHEDDVRIQGIVV 196


>gi|158320581|ref|YP_001513088.1| SOS-response transcriptional repressor, LexA [Alkaliphilus
           oremlandii OhILAs]
 gi|166990796|sp|A8MFC9|LEXA_ALKOO RecName: Full=LexA repressor
 gi|158140780|gb|ABW19092.1| SOS-response transcriptional repressor, LexA [Alkaliphilus
           oremlandii OhILAs]
          Length = 206

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 56/221 (25%), Gaps = 34/221 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
              +I   +     +    PS   +    GL  TS        +E +    R P+     
Sbjct: 8   KQLEILNYMKMEINKRGYPPSVREICEAVGLRSTSTVHGHLAKLEDKGYIRRDPTKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL+    +                            P          +  T N  +T  
Sbjct: 68  EILSNDPFSDYSHNKEMVQ-----------------VPIVGKVTAGQPILATENIEDTFP 110

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         +           +  SM        D +++      + GD ++      
Sbjct: 111 LPLN-------FIDHGNTFILNVKGESMIEAGILDNDYVVIRQQSTASNGDIVVALID-D 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N       ++  D+  + +++
Sbjct: 163 EATVKRFFKESD-HIRLQPENSLMDPILLK--DVVILGKVI 200


>gi|11138336|gb|AAG31331.1|AF182207_5 ORF 221 [Lactobacillus phage mv4]
          Length = 221

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 64/214 (29%), Gaps = 18/214 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   ++ +  +     + + R+ G+  ++        +      PS +++ K+      +
Sbjct: 17  IAGNLNALLSKTAYKKADVVRQTGISESTVYDYFNGKV-----LPSPKNVEKLADFFRVS 71

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPL-LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
             ++     +        ++   + +      + G   +        + T   P+     
Sbjct: 72  NEEIDPRFATMPENMVPVDQSHLVKIPLIGHIACGEPITADQNIE-GYITEYFPDHVD-- 128

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-IVAKVLI 186
                        K +  SM P    GDI  +    +V  G+   +          K + 
Sbjct: 129 ------PDSIFALKCEGDSMEPYILDGDIAYIRQQPEVEDGEIAAVLVDGDTRASLKRVK 182

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
               +   L+  N  Y    ++     + I +++
Sbjct: 183 KVGNQVF-LLPDNPHYSPIVLDQDHPGKIIGKMI 215


>gi|170720845|ref|YP_001748533.1| LexA repressor [Pseudomonas putida W619]
 gi|169758848|gb|ACA72164.1| transcriptional repressor, LexA family [Pseudomonas putida W619]
          Length = 202

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 60/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                              +   +   G    G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPG-----------FEAKAEENGLPIIGRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AEQHIEQSCNINPSFFHPRADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ +
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLIAENPDFAPIEVDLKE 187


>gi|237746397|ref|ZP_04576877.1| repressor protein CI [Oxalobacter formigenes HOxBLS]
 gi|229377748|gb|EEO27839.1| repressor protein CI [Oxalobacter formigenes HOxBLS]
          Length = 245

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 47/233 (20%)

Query: 5   SHKKIWEAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           + + + E +D + +++     T   LA+K G+  T+  + +R  +       + E++  I
Sbjct: 8   TKEIVAEQLDLLMKQNPHLG-TQMKLAKKTGIGQTTIGRIRRGEVNA-----TAENLRAI 61

Query: 62  LAAT----------------------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
             A                               ++          K  ++PL+ +  +G
Sbjct: 62  ADAFSVTVGFLYGEETIHGIHMDADGPAEAPLPPEVKPGYSGPPPDKVGQLPLISWVRAG 121

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKG 154
           +         P G+    +  P   S H             +    SM        Y  G
Sbjct: 122 NWSETIDNFAP-GDAEEWIPCPFKHSRH---------AFILQVVGKSMYNPGGERSYNDG 171

Query: 155 DILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           D + ++   +   G   ++          K L+        LM+LN  +P   
Sbjct: 172 DYIAVDPCREAQNGSLVVVRLDDDNTATFKQLLIEPNGERMLMALNPSWPNRI 224


>gi|227499696|ref|ZP_03929799.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC
           35098]
 gi|227218293|gb|EEI83552.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC
           35098]
          Length = 233

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 24/220 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+ +     E +    + +  T   +A K  +  +++   ++   E     P    +  
Sbjct: 29  MTNLT-----ENLKYYRKLNGYTQETIAPKLNIKTSAYGSYEQGRNE-----PPYSKLKM 78

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + +    +I +L   P        K    I +    P+G          P     +    
Sbjct: 79  LASIYGISISELTGEPEKKEPIQNKDYITINIYGSIPAG---------IPIEAIEDISDT 129

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            ++       Y         +    SM P Y  GD +I+        G    +     + 
Sbjct: 130 EDLSLKE---YDKNKTYLGLRVDGDSMYPKYLDGDTVIIEKTPDCESGTDAAVYVNGYEA 186

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARI 218
             K +I     +I L  +N  Y   T    D  +  +  +
Sbjct: 187 TLKTVIKNENGTITLKPINANYAPRTYGPGDDPVRILGVV 226


>gi|157363210|ref|YP_001469977.1| SOS-response transcriptional repressor, LexA [Thermotoga lettingae
           TMO]
 gi|172045979|sp|A8F429|LEXA_THELT RecName: Full=LexA repressor
 gi|157313814|gb|ABV32913.1| SOS-response transcriptional repressor, LexA [Thermotoga lettingae
           TMO]
          Length = 200

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 4/169 (2%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           PS   I +    T       L+          + ++   +     S +      G    G
Sbjct: 27  PSIRDIARAFRITPRGAIVHLNALEKK-GYLTRGKRARSIKVLNRSEAIRLPVVGTIAAG 85

Query: 113 NKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
           N    +  P            I       + +  SM        D +++      N GD 
Sbjct: 86  NAIEAIENPTEIIEVPKAMIKIGFDHFLLRVRGESMIEEHILDKDYVVIRKQNTANNGDI 145

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + +   + +   K +       I L   N       ++  +++ + +++
Sbjct: 146 VAVLTNSNEATLKKIY-IEPEKIILKPANSKMQPIELKPENVKILGKMV 193


>gi|254508996|ref|ZP_05121102.1| prophage MuMc02, peptidase, family S24 [Vibrio parahaemolyticus 16]
 gi|219548100|gb|EED25119.1| prophage MuMc02, peptidase, family S24 [Vibrio parahaemolyticus 16]
          Length = 201

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 52/203 (25%), Gaps = 30/203 (14%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            LA+  G  P + +  K             +   K    +                  E 
Sbjct: 22  DLAKALGKSPKTISNWKHRNHIPE------DIFIKARELSQNGSLAPRGYLELKFYDVEV 75

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
                 L+      S   F          +                           +  
Sbjct: 76  SAGHGALVEKEEESSAMVFSEKFIRQELGF-----------------NPNNIFLMPVRGD 118

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           SM P  +   I+++N     +     + +   G ++ K +       I ++S N  Y   
Sbjct: 119 SMSPTLKNQSIVMVNRVDGFSNDGIYVFRFD-GRLMVKRIQFLPQG-IKVVSDNSAYEPW 176

Query: 206 TVEMSDI-----EWIARILWASQ 223
            +  SDI     E I  ++W+ Q
Sbjct: 177 ELSKSDIQSADFEIIGEVVWSGQ 199


>gi|189423406|ref|YP_001950583.1| phage repressor [Geobacter lovleyi SZ]
 gi|189419665|gb|ACD94063.1| putative phage repressor [Geobacter lovleyi SZ]
          Length = 230

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 11/219 (5%)

Query: 9   IWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I+++ +  +L   + +A+    DP      K+ G    ++        +       
Sbjct: 13  IETIIEKLKKALDLKNDTDVAKALESDPRLLGTWKKRGTVPYDKIIKL--CIRHNINLQW 70

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                  LP          E +  +               +  +    + +        +
Sbjct: 71  IFSDDSSLPTVCRDNGLVSEADGYVQVPRYEVKASAGGGAIIHSEQIVDHLYFKTEWVKN 130

Query: 128 NGIYAIQTQDTRH-KTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVL 185
             +  I          Q  SM P    GD+++++    +V  G   +++     ++ K L
Sbjct: 131 --VLGIPRDFLALISVQGDSMEPTLSNGDLILIDVRTSKVEDGAIYVVQYD-DVLLVKRL 187

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
             +   S+ + S N  Y  + +   +   ++ + R++WA
Sbjct: 188 QKKYDGSVVIRSDNTLYEPEILHGDEALNLKIVGRVVWA 226


>gi|153940744|ref|YP_001391049.1| LexA repressor [Clostridium botulinum F str. Langeland]
 gi|168180367|ref|ZP_02615031.1| LexA repressor [Clostridium botulinum NCTC 2916]
 gi|168184852|ref|ZP_02619516.1| LexA repressor [Clostridium botulinum Bf]
 gi|170757134|ref|YP_001781343.1| LexA repressor [Clostridium botulinum B1 str. Okra]
 gi|170759494|ref|YP_001787115.1| LexA repressor [Clostridium botulinum A3 str. Loch Maree]
 gi|226949036|ref|YP_002804127.1| LexA repressor [Clostridium botulinum A2 str. Kyoto]
 gi|237795204|ref|YP_002862756.1| LexA repressor [Clostridium botulinum Ba4 str. 657]
 gi|171769217|sp|A7GE39|LEXA_CLOBL RecName: Full=LexA repressor
 gi|229621202|sp|B1KS97|LEXA_CLOBM RecName: Full=LexA repressor
 gi|229621209|sp|B1IM63|LEXA_CLOBK RecName: Full=LexA repressor
 gi|254809091|sp|C1FNT4|LEXA_CLOBJ RecName: Full=LexA repressor
 gi|259494470|sp|C3KX30|LEXA_CLOB6 RecName: Full=LexA repressor
 gi|152936640|gb|ABS42138.1| LexA repressor [Clostridium botulinum F str. Langeland]
 gi|169122346|gb|ACA46182.1| LexA repressor [Clostridium botulinum B1 str. Okra]
 gi|169406483|gb|ACA54894.1| LexA repressor [Clostridium botulinum A3 str. Loch Maree]
 gi|182668656|gb|EDT80634.1| LexA repressor [Clostridium botulinum NCTC 2916]
 gi|182672063|gb|EDT84024.1| LexA repressor [Clostridium botulinum Bf]
 gi|226841228|gb|ACO83894.1| LexA repressor [Clostridium botulinum A2 str. Kyoto]
 gi|229261036|gb|ACQ52069.1| LexA repressor [Clostridium botulinum Ba4 str. 657]
 gi|295319100|gb|ADF99477.1| LexA repressor [Clostridium botulinum F str. 230613]
          Length = 201

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 56/220 (25%), Gaps = 37/220 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFK 60
              +++  I    +     PS   + +  GL  TS      KR   EG  +  S+++   
Sbjct: 8   KQNEVYNFIKLQIKEKGYPPSVREICKAVGLSSTSSVHFHLKRLEKEGLIKRDSSKTRA- 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                                           +   P        + +    N  +   +
Sbjct: 67  ---------------------IEIVDPTSKKEVINVPIVGTITAGNPILAIENIEDVFPL 105

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P     +             K    SM       GD+ I+      N GD ++      +
Sbjct: 106 PIDYVKNT------KDLFMLKVSGESMIEAGILDGDLAIIEKTDSANNGDIVVALID-NE 158

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I L   N       +   + + + R++
Sbjct: 159 ATLKRFFKES-SYIRLQPENKSMKPIIL--ENCKVLGRLV 195


>gi|167767395|ref|ZP_02439448.1| hypothetical protein CLOSS21_01914 [Clostridium sp. SS2/1]
 gi|317496726|ref|ZP_07955056.1| LexA repressor [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711370|gb|EDS21949.1| hypothetical protein CLOSS21_01914 [Clostridium sp. SS2/1]
 gi|291559289|emb|CBL38089.1| SOS-response transcriptional repressor, LexA [butyrate-producing
           bacterium SSC/2]
 gi|316895738|gb|EFV17890.1| LexA repressor [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 205

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 51/218 (23%), Gaps = 31/218 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I E I R        P+   +     L  TS                S  S  + L
Sbjct: 9   KQQQILEFIKRRILDKGYPPAVREICEAVNLRSTS----------------SVHSHLETL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +    +       ++  P           +    N      +  
Sbjct: 53  ERKGYIHRDPTKPRAIEITDDDFNLARREIINIPVV-GTVTAGEPILAVENIEEYFPMLP 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               +               +  SM+      GD++I+      + GD ++         
Sbjct: 112 NHISN-------KNTFMLHVRGESMINAGIFDGDMVIVEQQPTADNGDIVV-AMIEDSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V  S++  I +++
Sbjct: 164 VKRFYK-EDGYYRLQPENDTMDPIIV--SEVSIIGKVV 198


>gi|148826910|ref|YP_001291663.1| transcriptional regulator [Haemophilus influenzae PittGG]
 gi|148718152|gb|ABQ99279.1| predicted transcriptional regulator [Haemophilus influenzae PittGG]
          Length = 213

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 63/211 (29%), Gaps = 16/211 (7%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            L +  G+      +          R    E+I K    T   +      P  +  T+  
Sbjct: 2   DLQKAVGVTYEMARRYTLGTAT--PRDNKIEAIAKYFGVTPAHLKYGTVDPLENQVTSNV 59

Query: 86  KEKEIPLLYF------PPSGSGGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYA 132
           K+     L+           +  F+       GN        +N   +   +S       
Sbjct: 60  KDVGSFDLWDRNTPLNSDEYAVPFYQDIRLAAGNGFADDIADYNNFKLRFSKSTLRKQGV 119

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                        SM P+   G  + ++   +     ++      G +  K+L +     
Sbjct: 120 QYENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQ 179

Query: 193 IDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222
           + + S N   +P +  +M DI  I ++ W S
Sbjct: 180 VKIRSYNSEEHPDEIADMQDISVIGKVFWYS 210


>gi|301170203|emb|CBW29807.1| unnamed protein product [Haemophilus influenzae 10810]
 gi|301170317|emb|CBW29923.1| unnamed protein product [Haemophilus influenzae 10810]
          Length = 221

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 32/229 (13%)

Query: 3   SFSHKKIW----EAIDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPS 54
             + +KI       +D   +R NL   G    +A    + P + +K            P+
Sbjct: 1   MITEEKIKQNFAARLDIACKRKNLPEKGRGKIIADMLKITPKAVSKWFNAET-----LPT 55

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-N 113
             +I+ +      T   L     +      +K+   PLL    +   G +       G +
Sbjct: 56  QANIYVLADFLEVTKEWLTYGDKNASIEKIEKQIYYPLLSPIQA---GLWTDIRSLEGFD 112

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
            +  +    I S               + +  SMLP + +GD+++++  I    G  +  
Sbjct: 113 GYEMIPSTAIASE---------NSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAA 163

Query: 174 KPRTGDIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216
                +   K       +        +L+ LN  +P  +    +I  I 
Sbjct: 164 INGDNEATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIG 212


>gi|297626485|ref|YP_003688248.1| LexA repressor, peptidase S24, SOS regulatory protein dinR
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922250|emb|CBL56822.1| LexA repressor, Peptidase S24, SOS regulatory protein dinR
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 280

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 59/220 (26%), Gaps = 21/220 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGR-NRWPSTESIFK 60
            ++I E +    E     PS   + +  GL  P+S + + +    +G   R P      +
Sbjct: 70  QRRILEFVQASVEAIGYPPSIREIGKAVGLTSPSSVSHQLEVLEDKGFVRRDPKRPRALE 129

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +                      +   + I +               +  +      + +
Sbjct: 130 VFMPPARRADADPAETMDITGFGDAFPEAINVPVI----GRIAAGVPILASEQVEQVMPM 185

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P                   + +  SM       GD +++      + GD +       +
Sbjct: 186 PRELVG-------DGTVFMLEVRGDSMIEAAICDGDYVVIRQQSTADNGDFVAALLD-DE 237

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K L  R    + LM  N  Y            + +++
Sbjct: 238 ATVKELQRR-DGHVWLMPHNQAYEPI--NGDQATLVGKVV 274


>gi|86609770|ref|YP_478532.1| S24 family peptidase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558312|gb|ABD03269.1| peptidase, S24 (LexA) family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 219

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 14/197 (7%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
              R+AG+  T+     +  +      PS +   KI       +  L+    S     + 
Sbjct: 24  AFGRRAGISDTALRSYLKGSV------PSIDKAVKIAQVGQVNLNWLITGEGSPQLHPDA 77

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
           K + + + +   + S G     +    +  + +         +       + +  + Q  
Sbjct: 78  KAEYVYVPFVDVAASAGAG--ALVREESIESVIAFERNWLRTHLKG-NPAELSLIRVQGD 134

Query: 146 SMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
           SM P    GD + +      + G + + +    GD++ K L    G  + ++S N  +P 
Sbjct: 135 SMSPTLEDGDWIFVERQEGGDLGCEGIYVFQMDGDLLVKRLQRLPGSQVKVISDNPRFPP 194

Query: 205 DTVEMSD----IEWIAR 217
              +++D    +  I R
Sbjct: 195 FVADLADPINGLTLIGR 211


>gi|329847829|ref|ZP_08262857.1| HTH-type transcriptional regulator prtR [Asticcacaulis biprosthecum
           C19]
 gi|328842892|gb|EGF92461.1| HTH-type transcriptional regulator prtR [Asticcacaulis biprosthecum
           C19]
          Length = 197

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 29/211 (13%)

Query: 21  NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80
            L+ + LAR  G      +           R+P  ++   I  A   ++  L+       
Sbjct: 2   GLSQADLARITGEPRAKISAYANGE-----RFPQADTAIAIADALGVSVPYLILGRGDGP 56

Query: 81  RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIYAIQTQD 137
           R+  +              +        F  G+ W     +    I    + + A+    
Sbjct: 57  RSLSR-------------MNDIPLSELRFSAGHGWVDVGEIEGRVIGFSDDELRALGRTS 103

Query: 138 T----RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                  + +  SM P    G  ++++  +     + +        +  K L       I
Sbjct: 104 IHGLKAFRAKGDSMTPTIPDGAPVLVD-ELDTQLNEGIYAFRVGEHLRIKRLRPVGVGGI 162

Query: 194 DLMSLNCCYPVDTVEMSDIE---WIARILWA 221
           +  S N  YP +  + +D+E    + R++WA
Sbjct: 163 EARSDNDHYPPEVFQGADLEHFKILGRVIWA 193


>gi|319744460|gb|EFV96817.1| phage transcriptional repressor [Streptococcus agalactiae ATCC
           13813]
          Length = 230

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 24/226 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  +      + S LA    ++  S+NK +        +  S  ++ +IL       
Sbjct: 4   GSNLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLS--ALARILDVPTTYF 61

Query: 70  CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115
                +  +  + + +             +K+       P  +           G     
Sbjct: 62  ESEYKIVNTYLQLSTENQGKVDEYADELLQKQQSQEKVIPLFAVEVLSDVSLSAGLGESL 121

Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
            +      + +           D     +  SM P+Y  G++ ++ ++     G  +   
Sbjct: 122 FDEYETETVYAEEEQY----GYDIAAWIKGDSMEPIYLDGEVALIRASGFDYDG-AVYAL 176

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                +  K L         ++SLN  YP   +   D    +  ++
Sbjct: 177 SWNDSVYIKKLYREENG-FKMVSLNDNYPDKWIPYEDNPRIVGLVV 221


>gi|227878838|ref|ZP_03996745.1| LexA repressor [Lactobacillus crispatus JV-V01]
 gi|256843360|ref|ZP_05548848.1| LexA repressor [Lactobacillus crispatus 125-2-CHN]
 gi|256849821|ref|ZP_05555252.1| transcriptional repressor protein [Lactobacillus crispatus
           MV-1A-US]
 gi|262046933|ref|ZP_06019893.1| LexA repressor [Lactobacillus crispatus MV-3A-US]
 gi|293381194|ref|ZP_06627202.1| repressor LexA [Lactobacillus crispatus 214-1]
 gi|295693156|ref|YP_003601766.1| lexa repressor [Lactobacillus crispatus ST1]
 gi|227861586|gb|EEJ69198.1| LexA repressor [Lactobacillus crispatus JV-V01]
 gi|256614780|gb|EEU19981.1| LexA repressor [Lactobacillus crispatus 125-2-CHN]
 gi|256713310|gb|EEU28300.1| transcriptional repressor protein [Lactobacillus crispatus
           MV-1A-US]
 gi|260572915|gb|EEX29475.1| LexA repressor [Lactobacillus crispatus MV-3A-US]
 gi|290922234|gb|EFD99228.1| repressor LexA [Lactobacillus crispatus 214-1]
 gi|295031262|emb|CBL50741.1| LexA repressor [Lactobacillus crispatus ST1]
          Length = 208

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 65/218 (29%), Gaps = 29/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I + I    E+ ++ P+   +    GL  TS        +E +       +  + L
Sbjct: 9   KQLEILQYIYDTVEKRSIPPTVREICSAVGLSSTSTVHGHLARLERKGWLVKDATKPRAL 68

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T E   +L             K KEIP++    +G             +  +   +P 
Sbjct: 69  EITREGKKELGI-----------KPKEIPVIGVVTAGQPI------LAVEDIDDYFPLPP 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                    +   +    K    SM+      GD +I+      N G+ ++      +  
Sbjct: 112 DL------KSDAGELFMLKVHGESMINAGILNGDSVIVRKQSSANNGEIVVAMTEENEAT 165

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K     +     L   N       +    +  + +++
Sbjct: 166 VKRFYKEKD-HYRLQPENDTMAPIILPK--VTILGKVV 200


>gi|255600323|ref|XP_002537435.1| conserved hypothetical protein [Ricinus communis]
 gi|223516369|gb|EEF24949.1| conserved hypothetical protein [Ricinus communis]
          Length = 295

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 76/242 (31%), Gaps = 29/242 (11%)

Query: 1   MTSFSHKK--------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M + +H +        + + I  + ++    P  L R  G+   + ++       G ++ 
Sbjct: 1   MYALTHIRRMSNTSSIVAKNIQWLMDQRKTNPYELQRATGVPQPTIHRIL----TGESKD 56

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           P T+S+  +       +  L +   S      +  K    +    +G G    + +    
Sbjct: 57  PRTKSLQPLADHFGVPLADLRERDLSAPADALEGLKPGSFMRITEAGQGDQRFTLIPKVR 116

Query: 113 -------NKWNTVGVPEIRS-------PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
                  + ++    P   +               +++      +  SM     +GD+++
Sbjct: 117 LRLTAGISGYDVEPEPFDGTTAALPTGWIERHGYDRSKLISIVVRGESMETTLYEGDLVV 176

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIA 216
           +N+A Q      +      G+ V K L         L S N           D   + I 
Sbjct: 177 VNTADQKLIDGAVYAINYEGEPVVKRLTRD-AGQWWLTSDNPDQRRYYRRTCDETTKIIG 235

Query: 217 RI 218
           R+
Sbjct: 236 RV 237


>gi|170781620|ref|YP_001709952.1| LexA repressor [Clavibacter michiganensis subsp. sepedonicus]
 gi|189046533|sp|B0RHB3|LEXA_CLAMS RecName: Full=LexA repressor
 gi|169156188|emb|CAQ01330.1| LexA repressor [Clavibacter michiganensis subsp. sepedonicus]
          Length = 226

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 29/226 (12%)

Query: 2   TSFSHKKI--WEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPS 54
            S S K+I   E I R        PS   +    GL   +S  ++  +  + G   R P+
Sbjct: 16  KSLSEKQISILEFIQRTIAGQGYPPSMREIGDAVGLASLSSVTHQLNQLELSGYLRRDPN 75

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                ++L          +DLP +    + +    +      P          +      
Sbjct: 76  RPRALEVL----------IDLPGTGTAESGEPSTPVGDAAMVPMVGRIAAGIPITAEQMV 125

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLI 173
                +P            +      +    SM+      GD +++        GD +  
Sbjct: 126 EEVFPLPRQLVG-------KGDLFMLRVVGDSMIDAAICDGDWVVVRQQKTAENGDIVAA 178

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   KV   +R     L++ N  +     + +++  + +++
Sbjct: 179 MLD-DEATVKVF-RQRDGHTWLLARNSAFEPILGDFAEV--VGKVV 220


>gi|145219701|ref|YP_001130410.1| putative prophage repressor [Prosthecochloris vibrioformis DSM 265]
 gi|145205865|gb|ABP36908.1| putative prophage repressor [Chlorobium phaeovibrioides DSM 265]
          Length = 241

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 63/245 (25%), Gaps = 36/245 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +   +   I  +   + L      +K G+     ++ +    +G       E + +  
Sbjct: 1   MDTVSTLGMRIRTVRRHYGLRQEEFGKKIGISGNRVSEIEN--NKGGTSASVLEELCRSF 58

Query: 63  AATNETICQLLDLP------------------------FSDGRTTEKKEKEIPLLYFPPS 98
             ++E +                                      E  ++E  L+  P  
Sbjct: 59  PVSHEWLLTGNGSMLRNKETGEESKGISERLTLLESRIGRIINVHENDDREPSLISVPLY 118

Query: 99  GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
            S                 +  P   +               K    SM+ +    GD L
Sbjct: 119 SSTVPAGMPAVAAEEVETYLDFPRSWTGGR------KNVYALKVSGDSMMDIGIMPGDTL 172

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIA 216
           ++ S      G  ++I     ++  K L    G  + L   N  Y    V    D   + 
Sbjct: 173 LVESRETARDGQ-VVIASLNSEVTVKTLCISDGGHVSLAPENRKYRPIPVTPESDFRIMG 231

Query: 217 RILWA 221
            ++ A
Sbjct: 232 -VVLA 235


>gi|253991045|ref|YP_003042401.1| hypothetical protein PAU_03571 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782495|emb|CAQ85659.1| Hypothetical Protein PAU_03571 [Photorhabdus asymbiotica]
          Length = 228

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 68/217 (31%), Gaps = 16/217 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            K+  + +    ++  L        +A+  G+ P + +K            P   ++  I
Sbjct: 8   RKEFADRLALACKKFGLDEHGRGVAIAKALGVTPKAASKWFNAES-----LPRQATMKGI 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                  +  L            K   E   + +      G               V + 
Sbjct: 63  ADYLRVDLAWLQLGI-------VKNADEQGKVEYAGKLKDGLVRVVGEAILGIDGAVDMV 115

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E  +    I +        K +  SM P  + G+ +++     V+ GD + ++ R G  +
Sbjct: 116 EFHAGWLRICSSDRDAYGLKVKGDSMWPRIQSGEFVVIEPNTLVHPGDEVFVRTRNGHNM 175

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            K++   R       S+N  +   T+   D+  I  +
Sbjct: 176 IKIMNITRNGDYQFSSINSDHRPITIPKDDVAMIHYV 212


>gi|237748353|ref|ZP_04578833.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229379715|gb|EEO29806.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 228

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 18/216 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+++EA   +   H    S LAR     P + +  +        R  S + + K      
Sbjct: 9   KRLYEAARVLKRIHG--QSELARAINASPQTIHNWQE-------RGISKQGMLKAQEVIG 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L                +   L+   S              +      + +    
Sbjct: 60  CSALWLETGSGPMSLNVLCNSSQ---LFSKTSQIPLIRPDQALKVNSTAAAPALGDPLGW 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                 + ++    +    SM P++++GD +IL+       GD ++ K      +     
Sbjct: 117 LFTHSNLSSRAYALEVSGNSMQPVFQEGDWIILDPMAVPEPGDFVVAKCGEKKELIFRKY 176

Query: 187 SRRG------RSIDLMSLNCCYPVDTVEMSDIEWIA 216
             +G       + +L+ LN  +P    ++  IE I 
Sbjct: 177 RPKGLDNSGKMTFELVPLNEDFPSLRSDILPIEIIG 212


>gi|225856824|ref|YP_002738335.1| transcriptional regulator [Streptococcus pneumoniae P1031]
 gi|225726261|gb|ACO22113.1| transcriptional regulator [Streptococcus pneumoniae P1031]
          Length = 227

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 14/217 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    E   L+ S LA   G+   S+   +      +    +   + +I           
Sbjct: 7   LKEKRESQGLSQSQLASSLGISRASYFNWESGKT--KPNQNNLSKLSEIFNVDPRYFESE 64

Query: 73  LDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            ++  +  + T+K +K                       F             T    + 
Sbjct: 65  FEIVETYLKLTKKNQKATLHYATELLNKQNAKVVEIPERFAYKVYEKLSAGTGTAYFDDG 124

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                        D        SM P Y+ G + ++        G  +           K
Sbjct: 125 NYDTVYFNRQFDYDFASWVSGVSMEPTYKNGSVALIKQTGFDYDG-AIYAIDWDSQTFIK 183

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
            +       + L+SLN  YP       +    I +I+
Sbjct: 184 KVYREENG-LRLVSLNRNYPDKFAPYDENPRIIGKIV 219


>gi|261345424|ref|ZP_05973068.1| peptidase, S24 family [Providencia rustigianii DSM 4541]
 gi|282566470|gb|EFB72005.1| peptidase, S24 family [Providencia rustigianii DSM 4541]
          Length = 230

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 65/227 (28%), Gaps = 16/227 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E +       NLT + LA   G    S  + +    +   R      + K L+ + + 
Sbjct: 3   ISERVKNKRILLNLTQAELAETVGTTQQSIEQLESGKTK---RPRFLPELAKALSCSVDW 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPL----LYFPPSGSGGFFDSGVFPTGNK----WNT--- 117
           +    +          +                     F+    F  GN      +    
Sbjct: 60  LVTGRENNNDSLPPENEWGSIKSWDSKTPLESDEVEVPFYKDIEFACGNGGCIDIDYNGF 119

Query: 118 -VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            +   +      G     +          SM P+      + ++ A +     ++    +
Sbjct: 120 KLRFSKSTLRRIGAPTDGSTIACFPANGDSMEPVIPNNAAVAIDMANKKIIDGKVYAIDQ 179

Query: 177 TGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARILWAS 222
            G    K+L  R G  + + S N   Y  +  +   +  I R+ W S
Sbjct: 180 DGLKRLKMLYRRPGGKLIIRSYNRDEYEDEEADEDSVTIIGRMFWYS 226


>gi|194468455|ref|ZP_03074441.1| transcriptional repressor, LexA family [Lactobacillus reuteri
           100-23]
 gi|227544968|ref|ZP_03975017.1| repressor lexA [Lactobacillus reuteri CF48-3A]
 gi|300910001|ref|ZP_07127461.1| repressor lexA [Lactobacillus reuteri SD2112]
 gi|194453308|gb|EDX42206.1| transcriptional repressor, LexA family [Lactobacillus reuteri
           100-23]
 gi|227185079|gb|EEI65150.1| repressor lexA [Lactobacillus reuteri CF48-3A]
 gi|300892649|gb|EFK86009.1| repressor lexA [Lactobacillus reuteri SD2112]
          Length = 208

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 57/221 (25%), Gaps = 42/221 (19%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGRNRWPS-TESIF 59
           +   I +  E H   P+   +    GL  TS      ++  ++  ++     P   E   
Sbjct: 12  VLNYIHKQVEDHGYPPTVREICSAVGLSSTSTVHGHISRLIEQGFLQKDPSKPRALEITP 71

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K L        Q            +                       +    N      
Sbjct: 72  KGLDILGVKPIQKEIPMLGVVTAGQP----------------------ILAVENATEFFP 109

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P     +N              + TSM+      GD +I+        GD ++      
Sbjct: 110 IPPSIQDNN-------DLFMLTIRGTSMIKAGIFNGDQVIVRKQSTAKNGDIVIAMNDDN 162

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K     +     L   N       ++   ++ + +++
Sbjct: 163 EATCKRFYKEK-TRFRLQPENDTMEPIFLDN--VKILGKVV 200


>gi|31544010|ref|NP_852735.1| putative CI protein [Haemophilus phage Aaphi23]
 gi|31408054|emb|CAD90788.1| putative CI protein [Haemophilus phage Aaphi23]
          Length = 238

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 64/242 (26%), Gaps = 27/242 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+         +  +  + N +   L    G+      +          R    E++  
Sbjct: 1   MTTL-----ASRLAELMTQQNKSIRDLQDALGVTYEMARRYTLGTAT--PRDAKIEAMAV 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY------------FPPSGSGGFFDSGV 108
               +   +             + +  K                       +  F+    
Sbjct: 54  YFGVSPAYLKYGASEETEKQGQSTESIKSNVREVGAFDLWDRNTPLNSDEYAVPFYQDIR 113

Query: 109 FPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
              GN        +N   +   ++                    SM P+   G  + ++ 
Sbjct: 114 LAAGNGFADDIADYNNFKLRFSKATLRKQGVQYENAVCVVADGNSMEPVIPDGTTVGIDL 173

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILW 220
             +     ++      G +  K+L +     + + S N   +P +  +M DI  I ++ W
Sbjct: 174 GNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNSEEHPDEIADMQDISVIGKVFW 233

Query: 221 AS 222
            S
Sbjct: 234 YS 235


>gi|300785371|ref|YP_003765662.1| LexA family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299794885|gb|ADJ45260.1| LexA family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 32/219 (14%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSK-RFGIEGRNRWPSTESIFKI 61
            ++I  AI     R+  +PS   L    GL  P+S +K       +G  R  +T S    
Sbjct: 20  QQRILVAIRDWVVRYGYSPSTRELGEAVGLQSPSSVSKHLASLEDKGFLRRGATVS---- 75

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                              R  + +             S      G    G   + +   
Sbjct: 76  -------------------RPIDVRAFLNGPAAAEDGDSVPVPVVGDIAAGTPISAIEHT 116

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +           +      + +  SM+      GDI+++    + + G  +       + 
Sbjct: 117 DDVLKLPRDLTGRGTVFGLRVRGDSMIDAAICDGDIVVVKQQSEAHSGQIVAAMID-EEA 175

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K +  RR   + L   N  Y    ++      +  ++
Sbjct: 176 TVK-VYRRRDGHVYLEPRNPAYD--VIDGDRAVILGAVV 211


>gi|89894323|ref|YP_517810.1| hypothetical protein DSY1577 [Desulfitobacterium hafniense Y51]
 gi|219668746|ref|YP_002459181.1| SOS-response transcriptional repressor, LexA [Desulfitobacterium
           hafniense DCB-2]
 gi|123280013|sp|Q24X76|LEXA_DESHY RecName: Full=LexA repressor
 gi|254809094|sp|B8FWD3|LEXA_DESHD RecName: Full=LexA repressor
 gi|89333771|dbj|BAE83366.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539006|gb|ACL20745.1| SOS-response transcriptional repressor, LexA [Desulfitobacterium
           hafniense DCB-2]
          Length = 204

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 39/226 (17%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPS 54
              S ++  I E I R+       PS   +    GL   ++ +   +   E     R P+
Sbjct: 3   PDLSQRQTDILEYIKRVIREKGYPPSVREIGDAVGLMSSSTVHGHLQTIEEKGYIRRDPT 62

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                +IL +                      +       F P          +    N 
Sbjct: 63  KPRAIEILDS--------------------SSDANEKKTVFVPIIGKVTAGQPILAQENI 102

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            +T  +P      + +          + +  SM+      GD++++        G+ ++ 
Sbjct: 103 EDTFPLPVDVVNSDTV-------FMLRVKGESMIDAGIMDGDLILVRQQKVARNGEIVVA 155

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K     +   I L   N           D+  + +++
Sbjct: 156 MID-EEATVKRFYKEK-TLIRLQPENPYMEPIY--SQDVTILGKVI 197


>gi|329889506|ref|ZP_08267849.1| peptidase S24-like family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328844807|gb|EGF94371.1| peptidase S24-like family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 152

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
              + IPLL    +G  GFFD    P    W+   +P          A +          
Sbjct: 23  PHPRAIPLLGLARAGDEGFFDDAGLPMAEGWDQTELP----------AHKDSLFSLTIDG 72

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSIDLMSLNCCYP 203
            SM P+YR GD +I++           ++     G+ +AK + +  GR + L S+N  Y 
Sbjct: 73  DSMEPVYRPGDRVIVDLDATEVRRGDRVVVRTAEGETLAKEIAALNGREVVLASVNPHYE 132

Query: 204 VDTVEMSDIEWIARILWASQ 223
              +    I W+ARILW SQ
Sbjct: 133 PRILPRGQIRWMARILWVSQ 152


>gi|28871153|ref|NP_793772.1| repressor protein cI [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28854403|gb|AAO57467.1| repressor protein cI [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 234

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 20/207 (9%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           LT   LA  AG+ P S N+  R       R+ +   + K+L        + ++       
Sbjct: 32  LTQRKLAEAAGITPASVNQYLRGINPLNARFAAV--LAKMLE-------EPIESFSPRLA 82

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSPHNGIY--AIQTQDT 138
           T   +   +  +  P   +  +        G     +   P   S        +   +  
Sbjct: 83  TEISEMANVGPMTQPRREATEYPLITWVDAGQGIESSASYPTGISDEWLSSTESAGPKGY 142

Query: 139 RHKTQDTSML----PLYRKGDILILNSAI-QVNCGDRLLIKPRT-GDIVAKVLISRRGRS 192
             + +  SM     P + +G  +++      +  G   + +    G+   K  +   G  
Sbjct: 143 WLRVKGKSMTSDTPPTFPEGTPILIRPEGFDLISGKFYVARNTVSGETTFKQFVMDAGVG 202

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
             L+ LN  Y    ++    E I R +
Sbjct: 203 Y-LVPLNPSYQPVVLD-DGWEIIGRAI 227


>gi|71736015|ref|YP_276778.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556568|gb|AAZ35779.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 243

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y     + G   + +         
Sbjct: 65  GPKHPNESANENTGDDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRMPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 231


>gi|160946089|ref|ZP_02093303.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270]
 gi|158447821|gb|EDP24816.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270]
          Length = 207

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 64/207 (30%), Gaps = 12/207 (5%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           +T + LA+K G+ PT+ +  +R         P  ++I  +    +  +    D       
Sbjct: 1   MTQAQLAKKLGVAPTTVSSWERNDNN-----PLMDNITLMAEIFDVPVSYFFDKKDGIIV 55

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
                E  +  +   P        +         + V    + +   G Y+        K
Sbjct: 56  NEPAIEYSVSPVLKTPLYGSIAAGALSLVDPVTESNVRYINLPAEALGKYSHAKGLFALK 115

Query: 142 TQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL---MS 197
               SM  +   G  +      I+    D ++I     +   K         + +    S
Sbjct: 116 VNGESMNKVIPNGSYIACKPIEIEDLKDDDIVIFSVDNEYSMKRFRRDDENRVLIFSPES 175

Query: 198 LNCCYPVDTVE---MSDIEWIARILWA 221
            +  Y    V     +D++  A+++W 
Sbjct: 176 TDRKYHDIVVPFDTPNDLKIYAKVIWY 202


>gi|257068245|ref|YP_003154500.1| SOS-response transcriptional repressor, LexA [Brachybacterium
           faecium DSM 4810]
 gi|256559063|gb|ACU84910.1| SOS-response transcriptional repressor, LexA [Brachybacterium
           faecium DSM 4810]
          Length = 234

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 25/223 (11%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTES 57
            + ++  I E I+         P+   +    GL  +S   ++ +    +G  R      
Sbjct: 24  LTRRQRLILETINEAVATRGYPPTMREIGDAVGLTSSSSVAHQLQSLERKGFLR--RDPK 81

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             + +             P                    P          +       + 
Sbjct: 82  RPRAMEVVMPEADDAPTPPAVAAEPEISPSSV-----TVPLVGRIAAGVPITAEEQVEDV 136

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176
             +P+                  +    SM+      GD +++ S      G+ +     
Sbjct: 137 FTLPQRLVG-------DGDLFLLQVVGDSMIDAAICDGDWVVVRSQSTAERGEIVAAMID 189

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K  + +R   + LM  N  +     + +D+  + +++
Sbjct: 190 -GEATVKTFV-QRDDHVWLMPHNPAFAPILGDHADV--LGKVV 228


>gi|170719058|ref|YP_001784213.1| prophage repressor [Haemophilus somnus 2336]
 gi|168827187|gb|ACA32558.1| putative prophage repressor [Haemophilus somnus 2336]
          Length = 228

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 18/219 (8%)

Query: 11  EAIDRMAERHNLTPS----GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           E +D   +   L        +A    L P + +K             +T  +   L+ T 
Sbjct: 12  ERLDLACKNKGLPNKGRGKQIADILKLTPKAVSKWFNAETM--PSTANTYVLADFLSVTP 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           E +       F    T  +  K        P  +G F +  +    ++     +   +  
Sbjct: 70  EWLTFGDVKNFDKNATFVEVVKSFYYPLLSPVQAGYFTEVNLLSNTDEITQYEMISSQVK 129

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                         K    SM P +++GD+++++  I    GD ++      +   K   
Sbjct: 130 AG------QNAFYLKIVGNSMSPRFQEGDMVLIDPEIYPVPGDFVVAINEDNEATFKQYK 183

Query: 187 ------SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                     +   L+ LN  +   + +   I+ I + +
Sbjct: 184 ETGEVDEHGRKHFKLVPLNDNFGTLSSKHHKIKIIGKAV 222


>gi|227537268|ref|ZP_03967317.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242872|gb|EEI92887.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 259

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 16/221 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + ++  LT    A    +   S    +    E     P  E + KI    + 
Sbjct: 3   NIASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAE-----PKYELLKKIAEYFDL 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP-----PSGSGGFFDSGVFPTG--NKWNTVGV 120
           T+ +L +    D      +     L                        G  N +     
Sbjct: 58  TMDELANDSIDDKWKPTPRSNASNLRVLSVTVDQQDRENIELVPVKASAGYLNGYGDPEY 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTG 178
                  +     Q      + +  SMLPL     I+   + +   +  G   +I  +  
Sbjct: 118 VAELPKFSLPMFNQGTYRAFEIKGDSMLPLPSGSVIIGEYVENWHDIKPGQTYIIVSKEE 177

Query: 179 DIVAKV--LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            +V K      +  + + L+S N  Y    V   DI  + +
Sbjct: 178 GVVYKRIAFKYKEEKGLKLVSDNKTYEPYWVGADDILEVWK 218


>gi|225076034|ref|ZP_03719233.1| hypothetical protein NEIFLAOT_01061 [Neisseria flavescens
           NRL30031/H210]
 gi|241760766|ref|ZP_04758857.1| transcriptional regulator [Neisseria flavescens SK114]
 gi|319639088|ref|ZP_07993845.1| transcriptional regulator [Neisseria mucosa C102]
 gi|224952749|gb|EEG33958.1| hypothetical protein NEIFLAOT_01061 [Neisseria flavescens
           NRL30031/H210]
 gi|241318663|gb|EER55215.1| transcriptional regulator [Neisseria flavescens SK114]
 gi|317399666|gb|EFV80330.1| transcriptional regulator [Neisseria mucosa C102]
          Length = 228

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    S    +
Sbjct: 18  QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPDS 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134
           E  +                            G+         + +     Y I+     
Sbjct: 73  EAPKATATDTLGNPVDIDEFVFVPRYDIQAAAGHGQLVGDEQPMFAMAFRRYWIENYVTR 132

Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N        D L +     +++ K L    G  
Sbjct: 133 DIKNLSVISVKGDSMEGVLNDGDTILINHGQTT-PRDGLYVLRLNENLLVKRLQLIPGGI 191

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           ++++S N  YP   +++     D+  I R+ W
Sbjct: 192 VNVISANEAYPTFEIDLKNPTDDVAIIGRVEW 223


>gi|134299726|ref|YP_001113222.1| SOS-response transcriptional repressor, LexA [Desulfotomaculum
           reducens MI-1]
 gi|172044299|sp|A4J5P4|LEXA_DESRM RecName: Full=LexA repressor
 gi|134052426|gb|ABO50397.1| SOS-response transcriptional repressor, LexA [Desulfotomaculum
           reducens MI-1]
          Length = 214

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 21/224 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTE 56
           M +   +++   I    +     PS   +    GL  +S   +  KR   +G  R   T+
Sbjct: 1   MLNAREEEVLNVIIENVKLKGYPPSVREIGEAVGLSSSSTVHSYLKRLEQKGYLRRDPTK 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                       + +L   P S   T+E        L   P          +    N   
Sbjct: 61  PRA-----IEVIMSELSKNPSSHPLTSELSRYSDEELISIPLLGEVAAGVPLLAVENYDE 115

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            V +P   + +        +      +  SM       GD++++     V+ GD  +   
Sbjct: 116 KVTLPRSFTGY-------GEFFMLSVRGDSMIEAGILPGDLVLVRRQESVSNGDIAVAL- 167

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   K     +   I L   N       V+  +++ + +++
Sbjct: 168 LEDEATVKRFYKEKN-RIRLQPENSLLSPIYVQ--EVKILGKVV 208


>gi|294500838|ref|YP_003564538.1| LexA repressor [Bacillus megaterium QM B1551]
 gi|295706182|ref|YP_003599257.1| LexA repressor [Bacillus megaterium DSM 319]
 gi|52694114|emb|CAG24077.1| DinR protein [Bacillus megaterium]
 gi|294350775|gb|ADE71104.1| LexA repressor [Bacillus megaterium QM B1551]
 gi|294803841|gb|ADF40907.1| LexA repressor [Bacillus megaterium DSM 319]
          Length = 205

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 56/218 (25%), Gaps = 32/218 (14%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPSTESIFKI 61
            + I + I    +     PS   +    GL   ++ +    R   +G  R          
Sbjct: 7   QQDILDFIKHEVKLKGYPPSVREIGEAVGLASSSTVHGHLARLESKGLIRR--------- 57

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
              T     ++L L   +   +         +   P          +    N      +P
Sbjct: 58  -DPTKPRAIEVLQLDEVNIPKSN--------VINVPVIGKVTAGLPITAVENVEEYFPLP 108

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +     +            +    SM       GD++I+      N GD ++      + 
Sbjct: 109 DKFVSPDD------HVFMLEIMGESMIEAGILDGDMVIVRQQQTANNGDIVVAMTEDNEA 162

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K         + L   N       +    +  + ++
Sbjct: 163 TVKRFFKEEN-FVRLQPENSTMAPIILRH--VTILGKV 197


>gi|257869424|ref|ZP_05649077.1| transcriptional repressor LexA [Enterococcus gallinarum EG2]
 gi|257803588|gb|EEV32410.1| transcriptional repressor LexA [Enterococcus gallinarum EG2]
          Length = 206

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 59/230 (25%), Gaps = 42/230 (18%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50
           M   +  +   I + I          P+   +     L  TS      ++ ++ G+    
Sbjct: 1   MAKRTENRQIEILKFIHTRVTEKGYPPTVREIGEAVQLSSTSTVHGHLSRLEKKGLI--L 58

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R P+     ++                    T+   EK        P          +  
Sbjct: 59  RDPTKPRAIEL--------------------TSSGLEKIDVQPNSIPMLGVVTAGEPILA 98

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
             +  +   +P   +                 +  SM+      GD +I+        GD
Sbjct: 99  VEDASDFFPIPPDLANST------GSLFMLTIRGESMINAGILDGDQVIVRKQQSAQNGD 152

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K     +   I L   N       +   D+  +  ++
Sbjct: 153 IVIAMTDEDEATCKRFFKEQD-HIRLQPENDYLEPIILP--DVTILGLVV 199


>gi|262066050|ref|ZP_06025662.1| LexA repressor [Fusobacterium periodonticum ATCC 33693]
 gi|291380300|gb|EFE87818.1| LexA repressor [Fusobacterium periodonticum ATCC 33693]
          Length = 219

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 69/215 (32%), Gaps = 13/215 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + R+  +H  +  GLA+K  L  T  +K ++          S   I +++    +  
Sbjct: 4   GTTLKRIRLKHKDSLRGLAKKINLHFTFIDKVEKGTAP-----ISNNFIERVIEVYPDEE 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP-HN 128
             L      +       + E   +    S        G    G  +  +  P+   P   
Sbjct: 59  KTLKKEYLKENLPKVFNKDESIKI-LEDSEVLNLPVYGKASAGRGYLNMDKPDYYMPITK 117

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-S 187
           G +++       +    SM P    G+  +++        +++ +     +   K +   
Sbjct: 118 GDFSL--NSFFVEITGNSMEPTLEDGEYALVDPNNTAYVKNKIYVVTYNDEGYIKRVELK 175

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            + ++I L S N  Y    +        +   R++
Sbjct: 176 EKKKTITLKSDNPDYDDIDIPEEMQEYFKINGRVV 210


>gi|167587266|ref|ZP_02379654.1| LexA repressor [Burkholderia ubonensis Bu]
          Length = 215

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 61/214 (28%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                             L             G    G+   
Sbjct: 54  GVIELAAG----------ASRGIRLLGGDDAPHQFTLPHAALMQLSLPLVGRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHFACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  R G  ++L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLKRRPGG-LELIAENPDYENIFVKA 195


>gi|227529091|ref|ZP_03959140.1| repressor lexA [Lactobacillus vaginalis ATCC 49540]
 gi|227350935|gb|EEJ41226.1| repressor lexA [Lactobacillus vaginalis ATCC 49540]
          Length = 210

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 30/221 (13%)

Query: 5   SHKKI--WEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           S K+I     I +  + H   P+   +    GL  TS   S    +          S  +
Sbjct: 6   SQKQIAVLSCIYKHVKDHGYPPTVREICGIVGLSSTSTVHSHLNNLIKEGYLQKDPSKPR 65

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L  T + +  L   P                +                   +  +   +
Sbjct: 66  ALEITKQGLDLLGIEPEQKEIPMVGVVTAGQPI---------------LAVEDTTDYFPL 110

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P             +     K   TSM+      GD +I+        G+ ++      +
Sbjct: 111 PPTI-------KDASGLFMLKIHGTSMIKAGILDGDDVIVRKQSTAKDGEIVIAMTSDNE 163

Query: 180 IVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K        +   L   N   P   ++   +  + +++
Sbjct: 164 ATCKRFYKEPENKRYRLQPENDTMPPIYLDN--VTILGKVI 202


>gi|307701883|ref|ZP_07638892.1| transcriptional regulator [Streptococcus mitis NCTC 12261]
 gi|307616698|gb|EFN95886.1| transcriptional regulator [Streptococcus mitis NCTC 12261]
 gi|332362037|gb|EGJ39839.1| transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 227

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 56/217 (25%), Gaps = 14/217 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    E   L+ S LA   G+   S+   +      +    +   + +IL          
Sbjct: 7   LKEKRESQGLSQSQLASSLGISRVSYFNWESGKT--KPNQNNLSKLSQILTVDPCYFESE 64

Query: 73  LDLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            ++  +  + TEK +K                       F             T    + 
Sbjct: 65  YEIVETYLKLTEKNQKATLHYATELLNKQNEKVVDIPERFAYKVYEKLSAGTGTAYFDDG 124

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                        D        SM P Y  G + ++        G  +      G    K
Sbjct: 125 NYDTVYFNHQFDYDFASWVFGNSMEPTYENGSVALIKQTGFDYDG-AIYAIDWDGQTYIK 183

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
            +       + L+SLN  Y        +    I +I+
Sbjct: 184 KVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 219


>gi|257792947|ref|YP_003186346.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479639|gb|ACV59957.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 223

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 59/203 (29%), Gaps = 4/203 (1%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +  + + ++ +  NLT + LA  +G+     ++ +     GR +  + + +   L    E
Sbjct: 3   QFGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQR-GRPKPDTLKKLASALKVPYE 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSP 126
            +     +       T +     P+              G    G     + +       
Sbjct: 62  DLLLHAGVLNEQISRTSESRDLKPVDPSWYKRQVPIPVLGSIRAGTPVEMLALNSSEFVL 121

Query: 127 HNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            +       +    +    SM+      GD++I+      +  D  ++     +   K +
Sbjct: 122 VDSDLLGNHEGFALEVVGDSMIGDYIFPGDLVIVKYTSNFSPQDICVVAINGEEATLKRV 181

Query: 186 ISRRGRSIDLMSLNCCYPVDTVE 208
             +    I L   N         
Sbjct: 182 KCQGDICI-LTPSNPSMEPMVYN 203


>gi|124515630|gb|EAY57140.1| putative phage repressor [Leptospirillum rubarum]
          Length = 218

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 54/200 (27%), Gaps = 12/200 (6%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           + S LA K G++ +  ++                 + + +          LD        
Sbjct: 20  SQSELAEKIGVETSYLSRVIGKNASKNI----GSKVARKVERALFLPSGWLDKEEIQSEG 75

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
                  IP+         G        +      V V +       +            
Sbjct: 76  DGGALTTIPVYAITAGMGRGRLVD----SEEILKIVVVDQSTFGDMRLSGTGHGIVAVYA 131

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P      I+ ++   +    D + +      I  K L       + ++S N  Y
Sbjct: 132 DGESMEPTIPPKSIVFVDKNQRDLR-DGVYLVRLEDMIYVKRLQRLPDHKMKVISDNPIY 190

Query: 203 PVDTVEM---SDIEWIARIL 219
               V++    D E + +++
Sbjct: 191 KPFDVDLKNGDDFEILGKVV 210


>gi|46201984|ref|ZP_00054008.2| COG2932: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 230

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + ++ +        L+   G +    ++   F   G  +  + +    +         +
Sbjct: 9   RLLQLVQEQKTDLKNLSLAIGRNAAYLHQ---FVFRGTPKILAEDVRQALADHLAVEEDE 65

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---------VGVPE 122
           L        +     +++   L  P               G                 P+
Sbjct: 66  LRHSQIPTRKPRSPNQRDDVGLALPDGFLPVSEIDVRASAGYGAVHDGLEETKATWLFPD 125

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +    A  +          SM PL   GD ++++++ +V     + +      +V 
Sbjct: 126 AVVRYEFR-AQPSDLRMITITGDSMEPLLSSGDRILIDTSQKVPVPPGIFVIWDGMGLVT 184

Query: 183 KVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           K +         ++ + S+N  Y        +I  I R++WA
Sbjct: 185 KRIEHIPHSDPPTVVIRSINPEYQTYERTADEINIIGRVIWA 226


>gi|309704472|emb|CBJ03821.1| putative phage repressor protein [Escherichia coli ETEC H10407]
          Length = 216

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 31/222 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I +  +  NLT   LA   G++  +    ++   +     P+  ++  +  A      
Sbjct: 5   DRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQ-----PNGANLQALANALKCDPL 59

Query: 71  QLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            L+    S              K++PL+ +  +GS    + GV    +    V    + S
Sbjct: 60  WLVSGKGSPEPKINLKPEIFAVKKVPLISWVQAGSWTMTEPGVRK-EDAEEWVYTTALVS 118

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNS---AIQVNCGDRLLIKPRT 177
                          + +  SM      P   +G I+I+       +   G  ++     
Sbjct: 119 EM---------AFALRVRGDSMTNPLGSPSIPEGSIVIVEPDIIDTECINGKIVVAHING 169

Query: 178 G-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G +   K  +        L+ LN  Y        +   +  +
Sbjct: 170 GQEATLKKFVEDWPNRY-LVPLNPNYKTIEC-GENCRIVGLV 209


>gi|255972779|ref|ZP_05423365.1| transcriptional repressor LexA [Enterococcus faecalis T1]
 gi|255975835|ref|ZP_05426421.1| transcriptional repressor LexA [Enterococcus faecalis T2]
 gi|256619081|ref|ZP_05475927.1| transcriptional repressor LexA [Enterococcus faecalis ATCC 4200]
 gi|256958998|ref|ZP_05563169.1| transcriptional repressor LexA [Enterococcus faecalis DS5]
 gi|256961909|ref|ZP_05566080.1| transcriptional repressor LexA [Enterococcus faecalis Merz96]
 gi|256965107|ref|ZP_05569278.1| transcriptional repressor LexA [Enterococcus faecalis HIP11704]
 gi|257079029|ref|ZP_05573390.1| transcriptional repressor LexA [Enterococcus faecalis JH1]
 gi|257082532|ref|ZP_05576893.1| transcriptional repressor LexA [Enterococcus faecalis E1Sol]
 gi|257085165|ref|ZP_05579526.1| transcriptional repressor LexA [Enterococcus faecalis Fly1]
 gi|257086726|ref|ZP_05581087.1| transcriptional repressor LexA [Enterococcus faecalis D6]
 gi|257089903|ref|ZP_05584264.1| transcriptional repressor lexA [Enterococcus faecalis CH188]
 gi|257416111|ref|ZP_05593105.1| transcriptional repressor LexA [Enterococcus faecalis AR01/DG]
 gi|257419314|ref|ZP_05596308.1| transcriptional repressor [Enterococcus faecalis T11]
 gi|257422601|ref|ZP_05599591.1| transcriptional repressor [Enterococcus faecalis X98]
 gi|294781669|ref|ZP_06747004.1| repressor LexA [Enterococcus faecalis PC1.1]
 gi|255963797|gb|EET96273.1| transcriptional repressor LexA [Enterococcus faecalis T1]
 gi|255968707|gb|EET99329.1| transcriptional repressor LexA [Enterococcus faecalis T2]
 gi|256598608|gb|EEU17784.1| transcriptional repressor LexA [Enterococcus faecalis ATCC 4200]
 gi|256949494|gb|EEU66126.1| transcriptional repressor LexA [Enterococcus faecalis DS5]
 gi|256952405|gb|EEU69037.1| transcriptional repressor LexA [Enterococcus faecalis Merz96]
 gi|256955603|gb|EEU72235.1| transcriptional repressor LexA [Enterococcus faecalis HIP11704]
 gi|256987059|gb|EEU74361.1| transcriptional repressor LexA [Enterococcus faecalis JH1]
 gi|256990562|gb|EEU77864.1| transcriptional repressor LexA [Enterococcus faecalis E1Sol]
 gi|256993195|gb|EEU80497.1| transcriptional repressor LexA [Enterococcus faecalis Fly1]
 gi|256994756|gb|EEU82058.1| transcriptional repressor LexA [Enterococcus faecalis D6]
 gi|256998715|gb|EEU85235.1| transcriptional repressor lexA [Enterococcus faecalis CH188]
 gi|257157939|gb|EEU87899.1| transcriptional repressor LexA [Enterococcus faecalis ARO1/DG]
 gi|257161142|gb|EEU91102.1| transcriptional repressor [Enterococcus faecalis T11]
 gi|257164425|gb|EEU94385.1| transcriptional repressor [Enterococcus faecalis X98]
 gi|294451221|gb|EFG19688.1| repressor LexA [Enterococcus faecalis PC1.1]
 gi|323480742|gb|ADX80181.1| LexA repressor [Enterococcus faecalis 62]
          Length = 206

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 56/225 (24%), Gaps = 32/225 (14%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           M   +  +   + + I    E     P+   + +   L  TS        +E +      
Sbjct: 1   MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            +  + +  T E +                 EK        P          +       
Sbjct: 61  PTKPRAIELTPEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEAS 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +   +P                     +  SM+      GD +I+      N GD ++  
Sbjct: 104 DFFPLPPDLRTEENAL------FMLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAM 157

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K         I L   N       ++   +  + +++
Sbjct: 158 TDEDEATCKRFFR-EVDHIRLQPENDALAPILLDN--VTILGKVV 199


>gi|312796546|ref|YP_004029468.1| LexA repressor [Burkholderia rhizoxinica HKI 454]
 gi|312168321|emb|CBW75324.1| LexA repressor (EC 3.4.21.88) [Burkholderia rhizoxinica HKI 454]
          Length = 235

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 24/216 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 21  MTKLTARQQQVYDLIRRAIERTGFPPTRAEIAAELGFSSA-------NSAEEHLRALARK 73

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I  L         T          L             G    G+   
Sbjct: 74  GVIELAAGASRGIRLLSMEDGPHQYTLPHPAVMQLSLPLV----------GRVAAGSPIL 123

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +    +   D   K +  SM       GD+L +     V  G  ++ + 
Sbjct: 124 AQEHIAQHYACDPALFVSRPDYLLKVRGMSMRDAGIFDGDLLAVQKQHDVKEGQIVVAR- 182

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K         I+L++ N  Y    V    
Sbjct: 183 LGDDVTVKRFHRLVNG-IELIAENPDYENIIVSPGQ 217


>gi|184155184|ref|YP_001843524.1| LexA repressor [Lactobacillus fermentum IFO 3956]
 gi|260662316|ref|ZP_05863212.1| LexA repressor [Lactobacillus fermentum 28-3-CHN]
 gi|229621218|sp|B2GBL2|LEXA_LACF3 RecName: Full=LexA repressor
 gi|183226528|dbj|BAG27044.1| transcriptional repressor [Lactobacillus fermentum IFO 3956]
 gi|260553699|gb|EEX26591.1| LexA repressor [Lactobacillus fermentum 28-3-CHN]
 gi|299783097|gb|ADJ41095.1| LexA repressor [Lactobacillus fermentum CECT 5716]
          Length = 208

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 42/226 (18%)

Query: 5   SHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGRNRWPS 54
           ++K+  +   I +  + H   P+   +    GL  TS      N+  K+  ++     P 
Sbjct: 6   TNKQMAVLSFIHKQVDAHGYPPTVREICGAVGLSSTSTVHGHINRLIKKGYLKKDPSKPR 65

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
              I                          +     P     P          +    + 
Sbjct: 66  ALEI---------------------TPAGLEVLGITPKQTQIPLLGVVAAGEPILAVQDA 104

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            +   +P     H+              Q TSM+ +    GD +I+      N GD ++ 
Sbjct: 105 TDFFPIPPSIPDHD-------DLFMLTIQGTSMINIGILNGDKVIVRRQETANNGDIVIA 157

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K         I L   N       +   D+  + +++
Sbjct: 158 MTSDNEATCKRFFK-EQGHIRLQPENDTLAPIIL--DDVTILGKVV 200


>gi|120610290|ref|YP_969968.1| putative prophage repressor [Acidovorax citrulli AAC00-1]
 gi|120588754|gb|ABM32194.1| putative prophage repressor [Acidovorax citrulli AAC00-1]
          Length = 221

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 19/221 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL-AAT 65
           +  W  +    +   L+   LA   G+   S  K +  G  G         +  +     
Sbjct: 3   EDYWSRLKPAMDAAKLSAQQLADAMGISYQSVKKVRDGGSFGMVNNLKAAKLLGLSPEWL 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                Q             K +   PL+ +  +G          P G+       P    
Sbjct: 63  ATGKGQHPTTSNVAAGPNIKGKGRYPLISWVQAGEWTDICDNFQP-GDADEW---PPSHH 118

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP------LYRKGDILILNSAIQVNCGDRL-LIKPRTG 178
                          +    SM         + +G +L +N   +   G  + + +    
Sbjct: 119 NLGD------CGYMLRVHGDSMTAPAGSPYSFPEGVLLHVNPDKEPTPGQFVIVRRSGEN 172

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K L       + L ++N  +P   + + + +    ++
Sbjct: 173 VATFKRLA-LVDGELFLEAINPDWPKRYIPLKEGDVFCGVV 212


>gi|148379754|ref|YP_001254295.1| LexA repressor [Clostridium botulinum A str. ATCC 3502]
 gi|153932066|ref|YP_001384051.1| LexA repressor [Clostridium botulinum A str. ATCC 19397]
 gi|153936246|ref|YP_001387593.1| LexA repressor [Clostridium botulinum A str. Hall]
 gi|171769165|sp|A7FUK4|LEXA_CLOB1 RecName: Full=LexA repressor
 gi|172047888|sp|A5I2R7|LEXA_CLOBH RecName: Full=LexA repressor
 gi|148289238|emb|CAL83334.1| SOS regulatory protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928110|gb|ABS33610.1| LexA repressor [Clostridium botulinum A str. ATCC 19397]
 gi|152932160|gb|ABS37659.1| LexA repressor [Clostridium botulinum A str. Hall]
 gi|322806032|emb|CBZ03599.1| sos-response repressor and protease LexA [Clostridium botulinum
           H04402 065]
          Length = 201

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 56/220 (25%), Gaps = 37/220 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFK 60
              +++  I    +     PS   + +  GL  TS      KR   EG  +  S+++   
Sbjct: 8   KQNEVYNFIKLQIKEKGYPPSVREICKAVGLSSTSSVHFHLKRLEKEGLIKRDSSKTRA- 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                                           +   P        + +    N  +   +
Sbjct: 67  ---------------------IEIVDPTSKKEVINVPIVGTITAGNPILAIENIEDVFPL 105

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P     +             K    SM       GD+ I+      N GD ++      +
Sbjct: 106 PIDYVKNT------KDLFMLKVSGESMIEAGILNGDLAIIEKTDSANNGDIVVALID-NE 158

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I L   N       +   + + + R++
Sbjct: 159 ATLKRFFKES-SYIRLQPENKSMKPIIL--ENCKVLGRLV 195


>gi|297567214|ref|YP_003686186.1| peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM
           9946]
 gi|296851663|gb|ADH64678.1| Peptidase S24/S26A/S26B, conserved region [Meiothermus silvanus DSM
           9946]
          Length = 236

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 62/231 (26%), Gaps = 28/231 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            AI         + +   R  G     L+ T  ++ +R  I       ST  +  +L A 
Sbjct: 8   SAIRERRRELGKSQN---RIVGESEGRLNQTELSRLERGLIHPTL-DLSTAKLHALLEAL 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW------NTVG 119
             +     +    +      +  E             F   G    G          ++ 
Sbjct: 64  EWSPSDFAEATRLEYPGLPAQVSEQMRRIEVQPEWQAFAVYGSVSAGAGESEPLEGESIA 123

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM--------LPLYRKGDILILNSAIQVNCGDRL 171
           +P       G+         +      M              GD + ++   +   GD +
Sbjct: 124 IPAEILRRKGV--KPQNVRVYLVNGDCMISEGASRQEKSIAPGDYIAVDRGRRAVSGDIV 181

Query: 172 LIKPRTGD-IVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220
           +      + +V K         I L      +PV  + +  D+  I  + W
Sbjct: 182 VAWWPREEKLVVKRY-KVEKEGIRLYPTQPAHPVLVLGLEEDLYIIGPVFW 231


>gi|34495811|ref|NP_900026.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34101666|gb|AAQ58034.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 248

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 70/227 (30%), Gaps = 37/227 (16%)

Query: 24  PSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           P   A + GL+  SF N   + G+      P   +  KI A +   +  LL         
Sbjct: 23  PYAWAARNGLNKGSFTNMWYKGGV------PRIGTAQKIAANSGCRVEWLLYGEGPMQDE 76

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY----------- 131
             +          P        D    P G +     +P      +  +           
Sbjct: 77  CAQAHDAPMPAGLPALSPLADADEHEVPAGVQEEFCFIPRYNLKASAGFGTSAAGEQPMF 136

Query: 132 --------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                         A          +  SM  +    D +++N   + + G+ L +    
Sbjct: 137 YMAFRRYWVKNYLNASPRNLVVISVKGDSMSGVLEDRDTILVN-TAERHPGEGLFVIRIG 195

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIARILW 220
            DI  K L    G ++ + S N  Y   TV++S    + E I R++W
Sbjct: 196 DDIFVKQLQRLPGGAVQVKSANPLYETFTVDLSRASGEFEVIGRVVW 242


>gi|326564882|gb|EGE15086.1| peptidase S24-like protein [Moraxella catarrhalis 12P80B1]
          Length = 234

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 16/225 (7%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +++     NL+   L+ K G++     +  +   + + R    + + + L      +  
Sbjct: 7   RLNQAMSAKNLSLRDLSEKTGINYEMIRRYSKG--QAKPRNDKMKLLAQCLGVPITWLDY 64

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGVPEIRSPHN-- 128
                  +        +           +   F     F  G+       P         
Sbjct: 65  GEGEMTKNNDKLAPITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMG 124

Query: 129 -----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                 +  +          D SM P  + GD + ++   +     R+         + K
Sbjct: 125 RRTLSNLGVMPINAFAVTACDDSMTPYVQDGDTIYIDKRRKEVKDGRIFAIRFGELCLCK 184

Query: 184 VLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
            L       + ++S N   +P        +   + E I  +   S
Sbjct: 185 RLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 229


>gi|148747754|ref|YP_001285833.1| putative S24-like peptidase [Geobacillus virus E2]
 gi|113715696|gb|ABI36845.1| putative S24-like peptidase [Geobacillus virus E2]
          Length = 229

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 27/236 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFN-KSKRFGIEGRNRWPSTESI 58
           M   + ++I E    + ++   +     A   G+ PT+ N    R   +      S +++
Sbjct: 1   MIEVTKEEIVE---HLMKKAGYSSRRQFAEAIGIPPTTLNSMLTRGLGKA-----SIDNV 52

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--N 116
            K+      T+ +L  +  +      + + +   +        G   +G   T +    +
Sbjct: 53  LKVCKGLGITVEELEMMEANGWSEPRRDQNKPHSIKL-ELPLYGSIAAGALSTVDPITKD 111

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLI 173
            V    +     G YA        +    SM  +   G  +    +++  ++   D ++ 
Sbjct: 112 NVEYIALPKHMLGKYADSKDLFALRVNGESMNKVIPNGSYVACKPIDTIDELKEDDIVIF 171

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCC-----YPVDTVEMS---DIEWIARILWA 221
                +   K         + + S         Y    V      D++  A+++W 
Sbjct: 172 SHD-NEYSMKRFRKDEENRLLIFS--PESTFKKYHDIVVPYDTVNDLKIYAKVIWY 224


>gi|90961516|ref|YP_535432.1| LexA repressor [Lactobacillus salivarius UCC118]
 gi|227890603|ref|ZP_04008408.1| LexA repressor [Lactobacillus salivarius ATCC 11741]
 gi|123391376|sp|Q1WUI6|LEXA_LACS1 RecName: Full=LexA repressor
 gi|90820710|gb|ABD99349.1| LexA repressor [Lactobacillus salivarius UCC118]
 gi|227867541|gb|EEJ74962.1| LexA repressor [Lactobacillus salivarius ATCC 11741]
 gi|300214355|gb|ADJ78771.1| LexA repressor [Lactobacillus salivarius CECT 5713]
          Length = 206

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 38/222 (17%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESI 58
              I   I          P+   +    GL  TS      +K +  G+    R P+    
Sbjct: 8   QHDILRYIFSHVSDSGYPPTVREICNAVGLSSTSTVHGHLSKLESKGLI--KRDPTKPRA 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +I             L   +       + +IP++    +G        +       +  
Sbjct: 66  IEI------------TLAGLEMLDELPNKTQIPIVGTVTAG------EPILAVEENRDYF 107

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P         +           +  SM+      GD +I+      N G+ ++     
Sbjct: 108 PLPP-------YFESADDLFMLSIRGESMINAGILDGDQVIVRKQSSANNGEIVIAMTEE 160

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K           L   N       +   ++  + +++
Sbjct: 161 NEATCKRFFK-EDGYYRLQPENDTMDPIIL--ENVTILGKVV 199


>gi|261256870|ref|ZP_05949403.1| putative repressor protein of prophage [Escherichia coli O157:H7
           str. FRIK966]
          Length = 217

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 31/222 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I +  +  NLT   LA   G++  +    ++   +     P+  ++  +  A      
Sbjct: 6   DRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQ-----PNGANLQALANALKCDPL 60

Query: 71  QLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            L+    S              K++PL+ +  +GS    + GV    +    V    + S
Sbjct: 61  WLVSGKGSPEPKINLKPEIFAVKKVPLISWVQAGSWTMTEPGVRK-EDAEEWVYTTALVS 119

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNS---AIQVNCGDRLLIKPRT 177
                          + +  SM      P   +G I+I+       +   G  ++     
Sbjct: 120 EM---------AFALRVRGDSMTNPLGSPSIPEGSIVIVEPDIIDTECINGKIVVAHING 170

Query: 178 G-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G +   K  +        L+ LN  Y        +   +  +
Sbjct: 171 GQEATLKKFVEDWPNRY-LVPLNPNYKTIEC-GENCRIVGLV 210


>gi|148273199|ref|YP_001222760.1| LexA repressor [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|172047228|sp|A5CSL0|LEXA_CLAM3 RecName: Full=LexA repressor
 gi|147831129|emb|CAN02081.1| SOS repressor protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 226

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 64/226 (28%), Gaps = 29/226 (12%)

Query: 2   TSFSHKKI--WEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPS 54
            S S K+I   E I R        PS   +    GL   +S  ++  +  + G   R P+
Sbjct: 16  KSLSDKQISILEFIQRTIAGQGYPPSMREIGDAVGLASLSSVTHQLNQLELSGYLRRDPN 75

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                ++L     +              + +    +      P          +      
Sbjct: 76  RPRALEVLIDLPGSGA----------AESGEPSTPVGDAAMVPMVGRIAAGIPITAEQMV 125

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLI 173
                +P            +      +    SM+      GD +++        GD +  
Sbjct: 126 EEVFPLPRQLVG-------KGDLFMLRVVGDSMIDAAICDGDWVVVRQQKTAENGDIVAA 178

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   KV   +R     L+  N  +     + +++  + +++
Sbjct: 179 MLD-DEATVKVF-RQRDGHTWLLPRNSAFEPILGDFAEV--VGKVV 220


>gi|291302021|ref|YP_003513299.1| SOS-response transcriptional repressor, LexA [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571241|gb|ADD44206.1| SOS-response transcriptional repressor, LexA [Stackebrandtia
           nassauensis DSM 44728]
          Length = 227

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 56/217 (25%), Gaps = 28/217 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +KI   I          PS   +    GL   S    +   ++ +              
Sbjct: 30  QRKILSCIRDSVADRGYAPSVREIGHVVGLASASSVAYQLNQLQRK-------------- 75

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  +          ++ + E       + P        + +           +P  
Sbjct: 76  GFLRKDARRPRAVDIRPGSSGEAEGLRKAPKYVPVLGEIAAGTPILAEERVEEMFPLPAE 135

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                  +  +      K +  SM       GD +++    + + G+ +      G+   
Sbjct: 136 -------FVGEGDVFLLKVKGDSMIEAAITDGDWVVVRQQPEAHSGEIVAAMID-GEATV 187

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K    R    + L+  N  Y        + + + R++
Sbjct: 188 KTFKRR-DGHVVLLPANPMYDPI--PADEAQILGRVV 221


>gi|42524864|ref|NP_970244.1| transcriptional repressor of the SOS regulon [Bdellovibrio
           bacteriovorus HD100]
 gi|39577074|emb|CAE78303.1| transcriptional repressor of the SOS regulon [Bdellovibrio
           bacteriovorus HD100]
          Length = 240

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 1   MTSFS--------HKKIWEAIDRMAERHNLTPS--GLARKAGLDP-TSFNKS-KRFGIEG 48
           MT  +         K + E I+       ++PS   +    GL    S     K+   +G
Sbjct: 1   MTMKTPLPPLTPKEKSVLEFIEAHILSSGVSPSYQEIKDHFGLASFNSVQNYLKQLTNKG 60

Query: 49  RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
               P  +++ + +   +        L      T     +   L       S      G 
Sbjct: 61  YISNP--QNLKRAIQVLHSASAVQDQLQSKTVSTKTGSPRTQLLQARDEILSLPLL--GK 116

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
              G     +   E       +    ++    K Q  SM        DI+++      N 
Sbjct: 117 VAAGQPIEAIKHDEFVDVPPSMVRNPSKSFALKVQGDSMIEDGIFDEDIILIQKQNSANN 176

Query: 168 GDRLLIKPRTGDIVAKVLISRR-------GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD ++      +   K    R         + ++L   N           ++E    ++
Sbjct: 177 GDIIV-ATVDNEATVKRFYLRPRPETGDADKMVELRPSNSTMKSMWYTPDEVEIRGIVV 234


>gi|147668743|ref|YP_001213561.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269691|gb|ABQ16683.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
          Length = 210

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 7/189 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   I  + ER     + LA +AG+  +S    +          P  E+  KI      
Sbjct: 3   NLGLIIKELRERRGWPQTELADRAGISRSSLATIEIGRSV-----PKVETSIKIAKVFGM 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T+ +L      +   T  +  E  L     +          F      + V  P      
Sbjct: 58  TVEELYSKAGYETGKTVVETTEDILERLRLASPIAVPVYTDFVIHAG-DNVEAPIEYIYL 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
               A+      +  +   M P  + GDI I++  I    G+ +L    + +IV    + 
Sbjct: 117 ARPKAVGKNIEAYLIKGQCMEPDIQDGDIAIVDRDIAPEKGNIILCLINS-EIVIGRYLL 175

Query: 188 RRGRSIDLM 196
            +     + 
Sbjct: 176 DKEGKPYIQ 184


>gi|299534261|ref|ZP_07047610.1| putative phage repressor [Comamonas testosteroni S44]
 gi|298717719|gb|EFI58727.1| putative phage repressor [Comamonas testosteroni S44]
          Length = 226

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 64/230 (27%), Gaps = 29/230 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL---------TPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
           M+S S  +    ++ +  R            +PS L    G   + ++   +      +R
Sbjct: 11  MSSLSEIR-KHNLNALCVRRGWVSRKNPDAGSPSDLVNLLGRSSSFWSNRLQG-----SR 64

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
               E   +I           L     DG         + +L        G     V   
Sbjct: 65  DIGAELAREIEEKL------DLPKYSLDGDEESSDFVGVSILTVEVGAGPGRLVEIVEEA 118

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
           G       +   R                  +  SM P  + G +L++N A +      +
Sbjct: 119 G------TLQFRRDFLRNAGVSPANAAIVTVRGASMEPTIKDGAVLLINKADREPRAGHI 172

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARILW 220
                 G+++ K         +   S N  +    ++  ++     R +W
Sbjct: 173 YAFSWDGEMMVKRFFKVNDGWVA-RSDNPDHDDILIDGATETAVQGRAIW 221


>gi|330957725|gb|EGH57985.1| peptidase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 218

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H++I +AI        +    +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRHERIAKAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121
            AT      L      +             L   P  S  +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEGPEKAPEFD---ANVALIDQPKMSFRYPVISWVSAGSWEEAVQPYP 109

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209


>gi|227498517|ref|ZP_03928663.1| SOS-response transcriptional repressor [Acidaminococcus sp. D21]
 gi|226903975|gb|EEH89893.1| SOS-response transcriptional repressor [Acidaminococcus sp. D21]
          Length = 214

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 56/219 (25%), Gaps = 33/219 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            + I E I      +N  PS   + +  GL  ++   N  K+    G   W         
Sbjct: 18  QEMILEFIRSYISENNYPPSVREIGKGVGLASSASVHNNMKKLASLGFLNW--------- 68

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                  +K++ + +       +G      +    +  +   +P
Sbjct: 69  -------DTDKPRTYGLVSDEAWRKKEVVGVPLVGAVHAG----DPILADEHIEDMYPIP 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                                +  SM        D + +        GD ++      + 
Sbjct: 118 TELLGTKD------DVFMMVVEGDSMKDAGILDRDYVFVRRQDYAQNGDIVVALLNGEET 171

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K       + I L+  N  Y    V   +I+    ++
Sbjct: 172 TIKRYFREL-KQIRLVPENSAYSPI-VGTDNIKITGVVV 208


>gi|187923762|ref|YP_001895404.1| LexA repressor [Burkholderia phytofirmans PsJN]
 gi|229621206|sp|B2T3L9|LEXA_BURPP RecName: Full=LexA repressor
 gi|187714956|gb|ACD16180.1| transcriptional repressor, LexA family [Burkholderia phytofirmans
           PsJN]
          Length = 216

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 59/213 (27%), Gaps = 23/213 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G    +                S E
Sbjct: 1   MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSAN----------------SAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                     +       L             G    G+   
Sbjct: 45  EHLRALARKGVIELAAGASRGIRLLAGPEDSPHQFTLPHASIMQLSLPLIGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 105 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKRSEAKDGQIIIAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
              D+  K L  R    ++L++ N  Y    VE
Sbjct: 164 LGDDVTVKRLKRRPNG-LELIAENPDYENIFVE 195


>gi|323440314|gb|EGA98028.1| hypothetical protein SAO11_1051 [Staphylococcus aureus O11]
          Length = 192

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 20/202 (9%)

Query: 21  NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80
           NLT   +    G+  ++  K +   IE   R    + I K+  A   +   ++ +     
Sbjct: 2   NLTLEQVGDLVGVGKSTVRKWETGDIENMKR----DKIVKLAKALRVSPSFIMGIDDEQS 57

Query: 81  RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
           +      K+IP++    +G   +         N  + +                 ++   
Sbjct: 58  QLETLPVKKIPVVSKISAGLPIYC------EENLVDYIYFSTKNLNP------DKEEFGL 105

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL-- 198
           +    SM  L+ +GD++++     V  G   ++     +   K +    G  I L+    
Sbjct: 106 QVSGDSMNKLFDEGDVVVVEKDSIVENGQLGVVMINGYNGTVKRI-RYNGDQIILIPESN 164

Query: 199 NCCYPVDTVEMSD-IEWIARIL 219
           N  +        D I+ + R++
Sbjct: 165 NPNHYPQVYGKDDEIKIVGRVV 186


>gi|227514727|ref|ZP_03944776.1| repressor LexA family protein [Lactobacillus fermentum ATCC 14931]
 gi|227086931|gb|EEI22243.1| repressor LexA family protein [Lactobacillus fermentum ATCC 14931]
          Length = 199

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 40/220 (18%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGRNRWPSTESIFK 60
           +   I +  + H   P+   +    GL  TS      N+  K+  ++     P    I  
Sbjct: 3   VLSFIHKQVDAHGYPPTVREICGAVGLSSTSTVHGHINRLIKKGYLKKDPSKPRALEI-- 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                                   +     P     P          +    +  +   +
Sbjct: 61  -------------------TPAGLEVLGITPKQTQIPLLGVVAAGEPILAVQDATDFFPI 101

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P     H+              Q TSM+ +    GD +I+      N GD ++      +
Sbjct: 102 PPSIPDHD-------DLFMLTIQGTSMINIGILNGDKVIVRRQETANNGDIVIAMTSDNE 154

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I L   N       +   D+  + +++
Sbjct: 155 ATCKRFFK-EQGHIRLQPENDTLAPIIL--DDVTILGKVV 191


>gi|300935462|ref|ZP_07150457.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
 gi|300459344|gb|EFK22837.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
          Length = 215

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 58/211 (27%), Gaps = 18/211 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++     ++   LA + G+     +           R P+ E I +I+         + 
Sbjct: 10  KQLMRAQGMSQDSLADRMGITKGGLSHWLNG-----RREPNLEDIARIMRELGRRQFTVT 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                   +     + +P    P                N  +                 
Sbjct: 65  HDGMVIDDSVSNTLQAVP----PRDLGSYPVIDWKDTVNNMDD--ARRSALRHVTTSVIC 118

Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISR 188
                    +  SM          G +++++       G  ++ +   G I   K LI  
Sbjct: 119 SDDSYWLVAKGESMNAPQGLSIPAGTMILVDPHAPAIDGKLVIAQLEEGQIPTFKQLIID 178

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+ + L SLN  YP   +     + I  ++
Sbjct: 179 GGQRL-LRSLNPLYPPIPMNPES-KIIGVVV 207


>gi|114566539|ref|YP_753693.1| repressor lexA [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318397|sp|Q0AY82|LEXA_SYNWW RecName: Full=LexA repressor
 gi|114337474|gb|ABI68322.1| Repressor lexA [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 204

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 59/218 (27%), Gaps = 36/218 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            K+I + I +  +     PS   + +  GL  +S       R   +G  R    +    I
Sbjct: 11  QKQILDFIKQSCKEKGYPPSVREIGQAVGLKSSSTVHTHLVRLEEKGLIRRDPAKPRAII 70

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                 + +          P        S +    N  N + +P
Sbjct: 71  --------------------PLDDEPLLQSEALSVPVIGNVAAGSPILAEQNIDNYLSIP 110

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                    +         K +  SM       GD LI+      + G+ ++      + 
Sbjct: 111 VD-------FLGSGNHFILKVKGDSMIEAGILDGDYLIVREQADASNGEIVVALLD-NEA 162

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K    R    ++L   N      TV    ++   ++
Sbjct: 163 TVKRFYRR-DDYVELRPENALMDPITVNN--VQVAGKV 197


>gi|318059582|ref|ZP_07978305.1| LexA repressor [Streptomyces sp. SA3_actG]
          Length = 167

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 33/160 (20%), Gaps = 12/160 (7%)

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L                            P   + P          +    +  +   +
Sbjct: 13  FLRRDPHRPRAYEVRGSDQPSPQPADTTGKPAASYVPLVGRIAAGGPILAEESVEDVFPL 72

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P              +    K    SM       GD + +        GD +      G+
Sbjct: 73  PRQLVG-------DGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLD-GE 124

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         + L+  N  Y        +   + +++
Sbjct: 125 ATVKRFKR-EDGHVWLLPHNAAYQPI--PGDEATILGKVV 161


>gi|152990029|ref|YP_001355751.1| phage repressor protein [Nitratiruptor sp. SB155-2]
 gi|151421890|dbj|BAF69394.1| phage repressor protein [Nitratiruptor sp. SB155-2]
          Length = 219

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 75/221 (33%), Gaps = 13/221 (5%)

Query: 3   SFSHKKIWEAIDRMAER----HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
               +++ E I  +  +      +    +A   G+ P   +  K+     R + P  E +
Sbjct: 1   MLKVEEVIERIKDVLSKEIDGKKVYDKDVAAALGITPEHLSILKK-----RKKLPLPEIL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                        L D      +   +K   +       + +GG   +    +   +   
Sbjct: 56  DFCAKRKISINWLLYDQDPESLQENTQKFAYVHYFKEVGASAGGGALNYELVSQKLYIDE 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            + ++      +  I+           SM P  + G IL ++ +        + +     
Sbjct: 116 EIVQMLGGRGALKHIE----AIHLLGDSMEPTLKDGSILFVDRSELDVKKGGIFLLSTLM 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +  K +  R    ++++S N  YPV+ V+  +++ + +++
Sbjct: 172 GLFVKRVRLRLDGKLEMISDNPSYPVEVVQGDEVQVVGKVV 212


>gi|49079716|gb|AAT49923.1| PA3007 [synthetic construct]
          Length = 205

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 32/220 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E H   P  + +A++ G                     + E
Sbjct: 1   MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSP---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  +         +   G    G    G    
Sbjct: 46  HLKALARK----------GAIEMTPGASRGIRIPGFEPHAANDDEGLPVIGRVAAGAPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   + +  SM  +    GD+L ++   +   G  ++ + 
Sbjct: 96  AEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARI 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
              ++  K      G  + L++ N  +    V++ + E I
Sbjct: 156 -GEEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKEQELI 193


>gi|42519380|ref|NP_965310.1| LexA repressor [Lactobacillus johnsonii NCC 533]
 gi|47605798|sp|P61610|LEXA_LACJO RecName: Full=LexA repressor
 gi|41583668|gb|AAS09276.1| LexA repressor [Lactobacillus johnsonii NCC 533]
          Length = 207

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I   I    E     P+   +     L  TS        +E +       +  + +
Sbjct: 8   KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T +                  +E         P          +    +      +P 
Sbjct: 68  EVTEKG-----------------REALGIKPKDIPVVGVVTAGQPILAVQDIDEYFPLPP 110

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                        +    +    SM+      GD +I+      N G+ ++      +  
Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDHVIVRKQSSANNGEIVVAMTEDNEAT 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       + +  ++ + +++
Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199


>gi|294784043|ref|ZP_06749365.1| LexA repressor [Fusobacterium sp. 1_1_41FAA]
 gi|294479855|gb|EFG27634.1| LexA repressor [Fusobacterium sp. 1_1_41FAA]
          Length = 219

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 13/215 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + ++  +H  +  GLA+K  L  T  +K ++          S   I +++    +  
Sbjct: 4   GTTLKKIRLKHKDSLRGLAKKINLHFTFIDKVEKGTAP-----ISNNFIERVIEVYPDEE 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP-HN 128
             L      +       + E   +    S        G    G  +  +  P+   P   
Sbjct: 59  KTLKKEYLKENLPKVFNKDESIKI-LEDSEVLNLPVYGKASAGRGYLNMDKPDYYMPITK 117

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-S 187
           G +++       +    SM P    G+  +++        +++ +     +   K +   
Sbjct: 118 GDFSL--NSFFVEITGDSMEPTLEDGEYALVDPNNTAYVKNKIYVVTYNDEGYIKRVELK 175

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            + + I L S N  Y    +        +   R++
Sbjct: 176 EKKKVITLKSDNPDYDDIDIPEEMQEYFKINGRVV 210


>gi|255525232|ref|ZP_05392174.1| SOS-response transcriptional repressor, LexA [Clostridium
           carboxidivorans P7]
 gi|296188721|ref|ZP_06857109.1| repressor LexA [Clostridium carboxidivorans P7]
 gi|255511095|gb|EET87393.1| SOS-response transcriptional repressor, LexA [Clostridium
           carboxidivorans P7]
 gi|296046985|gb|EFG86431.1| repressor LexA [Clostridium carboxidivorans P7]
          Length = 202

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 52/218 (23%), Gaps = 32/218 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I+E I    +     PS   +    GL  TS                   ++   L
Sbjct: 8   KQMEIYEFIKEQIKEKGYPPSVREICAAVGLSSTS-------------------TVHGHL 48

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               +      D          +       +   P          +    N  +T  +P 
Sbjct: 49  ERLEKKGLIKRDATKPRTIEVIENSLNRKEMINVPIIGTITAGMPILAVENIEDTFPLPV 108

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                N       +    K    SM+      GD  I+        GD +       +  
Sbjct: 109 DYVKSN------KELFMLKVSGESMIDAGILNGDFCIIEKTNSAENGDIIAALID-NEAT 161

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K     +   I L   N       V    +  + +++
Sbjct: 162 LKRFFKEKD-HIRLQPENKTMNPIIVPNCQV--LGKLV 196


>gi|300361920|ref|ZP_07058097.1| repressor lexA [Lactobacillus gasseri JV-V03]
 gi|300354539|gb|EFJ70410.1| repressor lexA [Lactobacillus gasseri JV-V03]
          Length = 207

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I   I    E     P+   +     L  TS        +E +       +  + +
Sbjct: 8   KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T +                  +E         P          +    +      +P 
Sbjct: 68  EVTEKG-----------------REALGIKPKDIPIVGVVTAGQPILAVQDIDEYFPLPP 110

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                        +    +    SM+      GD +I+      N G+ ++      +  
Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILDGDHVIVRKQSSANNGEIVVAMTEDNEAT 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       + +  ++ + +++
Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199


>gi|326565577|gb|EGE15741.1| peptidase S24 S26A and S26B [Moraxella catarrhalis 103P14B1]
          Length = 224

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 66/230 (28%), Gaps = 22/230 (9%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +H  +   +    ++    P+ +A+  G++P + N   + GI         +SI K+  
Sbjct: 1   MTHPTMLRVLKATGKK----PAEIAKDLGIEPQNINNWSKRGISKE----GIKSISKLYN 52

Query: 64  A-TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              +  +         D       +  +       +          F  GN    +    
Sbjct: 53  IGIDWILNGEDYQQSVDDILQNTSQPFVSTEIDTKTKLWLPLMDISFSCGNGVG-IEYHF 111

Query: 123 IRSPHNGIYAIQ---------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
             +     +            +       +  SM      GDI  ++ +       ++  
Sbjct: 112 EETKKRLAFEPDFLSNRGVKASNTRLLYARGDSMEEFIFDGDIFAIDISDTNVRDGQIYA 171

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
               G+ + K +      ++ L S N  Y    V      D + + R  W
Sbjct: 172 VYFEGEAMLKQIFKEAAGTLILHSKNPKYRDKIVTEDNGADFKVLGRQFW 221


>gi|282850930|ref|ZP_06260304.1| peptidase S24-like protein [Lactobacillus gasseri 224-1]
 gi|282557882|gb|EFB63470.1| peptidase S24-like protein [Lactobacillus gasseri 224-1]
          Length = 226

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 64/220 (29%), Gaps = 23/220 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K I   +      H +T S LARKAG+  T+ +   R         P+  ++ K+  A 
Sbjct: 14  RKLISANLKEYM--HGMTQSELARKAGIPLTTLSGYLREKST-----PNAGNLEKLALAL 66

Query: 66  NETICQLLDLPFSDGRTTEKKEKEI----PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           N     +      +  +       I          P          +    N        
Sbjct: 67  NVKKSDIDPRYSFELDSEPTPSNSIDTSGMHYVRVPIIGTIACGEPILAEQNIEGYTHEL 126

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDI 180
               P         +    + Q  SM PL   G +++++    V   +   +        
Sbjct: 127 FEEEPKKD------ELFALRCQGDSMEPLIPDGALVLIHKQPTVEDDEIAAVQVDDDTRA 180

Query: 181 VAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIARIL 219
             K +    G+ + L  +N   Y    +   +     RIL
Sbjct: 181 TLKKV-KHVGKDVFLYPINTTKYDPIILNEDN---PGRIL 216


>gi|254498006|ref|ZP_05110769.1| phage repressor [Legionella drancourtii LLAP12]
 gi|254352783|gb|EET11555.1| phage repressor [Legionella drancourtii LLAP12]
          Length = 227

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 12/220 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +KI + I        LT   LA     L  +  N  +R            + + K+L  +
Sbjct: 5   EKIGQRIKHERTIKGLTRKALAELTDSLKISRINNYERGERTPGPEE--IKQLAKVLEVS 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              +  L D      +        IPLL +  +         +           +P   S
Sbjct: 63  PAFLMCLSDDKQGKLKKPLGLGALIPLLNYKQACDPAVCIQEIKNEQYSEIFTLIPISPS 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKV 184
                  I       + +D SM+P +RK D+LI++     N GD ++ K     +++ + 
Sbjct: 123 LTAR---IGENAFALEVKDDSMIPEFRKTDVLIIDPETMPNPGDFVIAKLDGDNEVILRK 179

Query: 185 LISRRGRS----IDLMSLNCCYPVDTVEMS-DIEWIARIL 219
                        +L++LN  +    V      + +  ++
Sbjct: 180 YKQLSASRTTPEFELIALNENWASLQVNGDTKDKIVGTVI 219


>gi|206601813|gb|EDZ38296.1| putative phage repressor [Leptospirillum sp. Group II '5-way CG']
          Length = 224

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 61/212 (28%), Gaps = 7/212 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + ++     + LA K     +  ++                SI K L      + 
Sbjct: 9   KNLTLLIKKWG-GATRLAEKLDRSLSQISQLTGTSPRPNIGHRLARSIEKKLELPEGWMD 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           Q      +    + +   +  +  +  + S G        +      V V +       +
Sbjct: 68  QDHSEYPAVQEESAEHGTQTTIPVYAITASMGRGR--FVESEAIIKIVVVNQSTLGEMRL 125

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                          SM P      I+ ++   +    D + +      I  K +     
Sbjct: 126 TGTGHGIVAVYADGESMEPTIPPKSIVFVDRNQRDLR-DGVYLVRLEDMIYVKRIQRLPD 184

Query: 191 RSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219
             + ++S N  Y    V++    D E + +++
Sbjct: 185 HKLKVISDNPIYKPFDVDLKNGDDFEILGKVI 216


>gi|297566157|ref|YP_003685129.1| putative phage repressor [Meiothermus silvanus DSM 9946]
 gi|296850606|gb|ADH63621.1| putative phage repressor [Meiothermus silvanus DSM 9946]
          Length = 235

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 17/225 (7%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPST 55
           M   + K+      AI         +   +  + G  L      + +    +      + 
Sbjct: 11  MPKVTKKEKPAWGRAIAARRAMLGKSLVDIENETGGELYQALIYRLENGKKD--PSTLTV 68

Query: 56  ESIFKILAATNETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                +L A         +    +     E      P               G+   G  
Sbjct: 69  RQFSLLLKALGWRASDWQEQTGLEPLLDLESPTSLQPGERVSKVRFFIELVRGLASAGRP 128

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLI 173
            +  G+P +          +     ++ +  SM P    GD + ++ +   +  G   ++
Sbjct: 129 VDADGMPVLAD------VWRRGSLLYQVEGDSMAPTLNDGDRVYVDPSDLDLREGRVYVL 182

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +        K +       + L+S N  Y       S++  I R+
Sbjct: 183 EIPGDGHTIKRVRRLDDGELWLVSDNPKYRPW--RPSEMRVIGRV 225


>gi|86357549|ref|YP_469441.1| LexA repressor [Rhizobium etli CFN 42]
 gi|86281651|gb|ABC90714.1| transcriptional regulator repressor LexA protein [Rhizobium etli
           CFN 42]
          Length = 223

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 15/217 (6%)

Query: 17  AERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +   + PS         LA K+G+        +R  I           + K+  A N +
Sbjct: 1   MKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYNPS 60

Query: 69  ICQLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           +        S                 P        S      G    G   + +     
Sbjct: 61  LQPRRGFSPSVIEGSLGKPQPVAAPAAPKPVADNGNSISVPVMGRIAAGVPISAIQNNTH 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                       +    + +  SM+      GD +I+ +    + GD ++      +   
Sbjct: 121 DIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNGSTASPGDIVVALVDDEEATL 180

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K    +   SI L + N  Y         ++   +++
Sbjct: 181 KRFRRKGA-SIALEAANPAYETRIFGPDRVKVQGKLV 216


>gi|227890245|ref|ZP_04008050.1| LexA repressor [Lactobacillus johnsonii ATCC 33200]
 gi|227849059|gb|EEJ59145.1| LexA repressor [Lactobacillus johnsonii ATCC 33200]
          Length = 207

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I   I    E     P+   +     L  TS        +E +       +  + +
Sbjct: 8   KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T +                  +E         P          +    N      +P 
Sbjct: 68  EVTEKG-----------------REALGIKPKDIPVVGVVTAGQPILAVQNIDEYFPLPP 110

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                        +    +    SM+      GD +I+      N G+ ++      +  
Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDHVIVRKQSSANNGEIVVAMTEDNEAT 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       + +  ++ + +++
Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199


>gi|49475607|ref|YP_033648.1| LexA repressor [Bartonella henselae str. Houston-1]
 gi|71648698|sp|Q6G5D9|LEXA_BARHE RecName: Full=LexA repressor
 gi|49238414|emb|CAF27641.1| SOS response regulator lexA protein [Bartonella henselae str.
           Houston-1]
          Length = 234

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 59/229 (25%), Gaps = 11/229 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M +    ++   I    +   + PS    K  L+ TS +   R       R         
Sbjct: 1   MLTCKQYELLLFIHNHMKETGVPPSFDEMKTALELTSKSGIHRLITALEERGFIRRLPNR 60

Query: 54  --STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             + E I      T          P        K  K           +      G    
Sbjct: 61  ARAVEVIRLPEKITFNLSSARKISPSVIENNKRKISKNSDNFDLEEKKNIIIPIMGRIAA 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
               + +                 +    + +D SM        DI+I+        G+ 
Sbjct: 121 AVPISAIQQQINTLCLPQDMISLGEHYALEVKDDSMIEAGILDKDIIIVRRQNTATSGEI 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      ++  K    + G SI L + N  Y         ++   +++
Sbjct: 181 IIALIDKEEVTFKRYRRK-GNSITLEAANPHYETRIYRPERVQIQGKLI 228


>gi|209520380|ref|ZP_03269143.1| transcriptional repressor, LexA family [Burkholderia sp. H160]
 gi|295676407|ref|YP_003604931.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1002]
 gi|209499165|gb|EDZ99257.1| transcriptional repressor, LexA family [Burkholderia sp. H160]
 gi|295436250|gb|ADG15420.1| transcriptional repressor, LexA family [Burkholderia sp. CCGE1002]
          Length = 216

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 61/213 (28%), Gaps = 23/213 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G    +                S E
Sbjct: 1   MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSAN----------------SAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                  + ++       L             G    G+   
Sbjct: 45  EHLRALARKGVIELAAGASRGIRLLSGQEDAPHQFTLPHAGLMQLSLPLIGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 105 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRSEAKDGQIIIAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
              D+  K L  R    I+L++ N  Y    VE
Sbjct: 164 LGDDVTVKRLKRRPNG-IELIAENPDYDNIFVE 195


>gi|312872372|ref|ZP_07732442.1| peptidase S24-like protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311092195|gb|EFQ50569.1| peptidase S24-like protein [Lactobacillus iners LEAF 2062A-h1]
          Length = 239

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 55/227 (24%), Gaps = 27/227 (11%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++ +   H      L     +  T+ N   +         P+  ++ K+    N     L
Sbjct: 19  LNHLMSVHGTKQVDLVNALDIPKTTINGYVKGTS-----LPNMGNLQKLADYFNTLKSDL 73

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSG-------------------SGGFFDSGVFPTGN 113
                 D             L                             +  G    G 
Sbjct: 74  DLRFKKDADEQIDISPVYNQLTDIRKHKVYSYAKQQLDEQNSNLNEHRSIYLVGSSAAGL 133

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
             +   +       + I A    D     +  SM P      I+  +    +  G+  + 
Sbjct: 134 PLDYGDLDAELIDLSNIPA--KADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIGIF 191

Query: 174 KPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +     +  K        + I L S+N  Y         +  + +++
Sbjct: 192 EINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFNGEQVRILGKVV 238


>gi|296133008|ref|YP_003640255.1| transcriptional repressor, LexA family [Thermincola sp. JR]
 gi|296031586|gb|ADG82354.1| transcriptional repressor, LexA family [Thermincola potens JR]
          Length = 204

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 37/217 (17%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFKILA 63
           I E I R   +    PS   + +  GL  +S        +E +    R P+     +IL 
Sbjct: 12  ILEFIKREIRKKGYPPSVREIGKAVGLSSSSTVHGHLAQLEEKGYIRRDPTKPRTIEILD 71

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                        +   P          +    N  +T  +P  
Sbjct: 72  P--------------------DSPVIKKEMVNVPIVGKVTAGEPILAVENIEDTFPLPLD 111

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                  +           +  SM       GD +++        GD ++      +   
Sbjct: 112 -------FVKNDNVFMLSVRGDSMVEAGILDGDYILVRQQSNAKNGDIVVAL-LGDEATV 163

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K     +   I L   N          ++ + I +++
Sbjct: 164 KTFYKEKD-YIRLQPENPRLEPII--TNEAQIIGKVI 197


>gi|261418071|ref|YP_003251753.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319767970|ref|YP_004133471.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374528|gb|ACX77271.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61]
 gi|317112836|gb|ADU95328.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC52]
          Length = 225

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 74/234 (31%), Gaps = 30/234 (12%)

Query: 4   FSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFN-KSKRFGIEGRNRWPSTESIFKI 61
            + ++I E    + ++   +     A   G+ PT+ N    R   +      S +++ K+
Sbjct: 1   MTKEEIVE---HLMKKAGYSSRRQFAEAIGIPPTTLNSMLTRGLGKA-----SIDNVLKV 52

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP----PSGSGGFFDSGVFPTGNKWNT 117
                 T+ +L  +  +      + + +   +        S + G   +    T +    
Sbjct: 53  CKGLGITVEELEMMEANGWSEPRRDQNKPHSIKLELPLYGSIAAGALSTVDPVTKDNVEY 112

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--QVNCGDRLLIKP 175
           + +P+      G Y+        K    SM  +   G  ++       ++   D ++   
Sbjct: 113 IALPKHML---GKYSDSKDLFALKVNGESMNKIIPNGSYVVCKPIEIGELKEDDIVIFSH 169

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC-----YPVDTVEMS---DIEWIARILWA 221
              +   K         + + S         Y    V      D++  A+++W 
Sbjct: 170 D-NEYSMKRFRKDEDNRLLIFS--PESTFKKYHDIVVPYDTVNDLKIYAKVIWY 220


>gi|153853138|ref|ZP_01994547.1| hypothetical protein DORLON_00532 [Dorea longicatena DSM 13814]
 gi|149753924|gb|EDM63855.1| hypothetical protein DORLON_00532 [Dorea longicatena DSM 13814]
          Length = 205

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59
             ++I E I          PS   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQEEILEYIKSQILERGFPPSVRDICEAVHLKSTSSVHSHLETLEKNGYIHRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL  +     + +                       P          +    N  N   
Sbjct: 69  EILDDSFNFNRREMVN--------------------VPVIGHVAAGEPLLAEQNIENYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         Y    Q    K    SM+      GD++++  +   + GD ++      
Sbjct: 109 IPME-------YMPNKQTFMLKVHGESMINAGILDGDLVLVEQSSVADNGDIVVALLD-D 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N       V   D++ + +++
Sbjct: 161 SATVKRFYKEE-GIFRLQPENDALEPIIVR--DLQIMGKVI 198


>gi|322835225|ref|YP_004215251.1| phage repressor [Rahnella sp. Y9602]
 gi|321170426|gb|ADW76124.1| putative phage repressor [Rahnella sp. Y9602]
          Length = 236

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 57/223 (25%), Gaps = 16/223 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +    T   LA   G+   S  K    G +   +     ++  +      +  
Sbjct: 5   ERLKLAMDEGGFTQGSLAEAVGMAQPSIWKLVSGGAKASKKTIQIANVLGV-RPEWLSDG 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----------WNTVGV 120
                      +     +E    Y    G            G              T+  
Sbjct: 64  DGPMRIGDAPHSAPLLVREKSEQYRIEDGFRIELLDVAVSAGPGTVNTNEFIEVVRTITY 123

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
               +        + Q      +  SM      GD++ ++ +IQ   GD +         
Sbjct: 124 TPEEARMMFGNRSEEQIRMINVKGDSMSGTIEPGDLIFVDISIQSFDGDGIYAFLYDDTA 183

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
             K L   +   + L S N  Y     +   +   +    +++
Sbjct: 184 HVKRLQKMKDYLLVL-SDNTRYQTWDPITRDEMNRVFIYGKVI 225


>gi|223043296|ref|ZP_03613343.1| LexA repressor [Staphylococcus capitis SK14]
 gi|314933518|ref|ZP_07840883.1| repressor LexA [Staphylococcus caprae C87]
 gi|222443507|gb|EEE49605.1| LexA repressor [Staphylococcus capitis SK14]
 gi|313653668|gb|EFS17425.1| repressor LexA [Staphylococcus caprae C87]
          Length = 206

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 31/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +    +I++ I  + +     PS   +    GL   ++ +                
Sbjct: 1   MRELTKRQSEIYDYIKHIVQTKGYPPSVREIGEAVGLASSSTVHGHLSR----------- 49

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L                +  + + +E  +      P          +    N  
Sbjct: 50  ------LEEKGYIRRDPTKPRAIEIVSEQLEEVNVEETIHVPVIGKVTAGVPITAVENIE 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
               +PE  +  +      +          SM       GD +I+ S      GD ++  
Sbjct: 104 EYFPLPEHLTSTHN-----SDIFILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIVAM 158

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K     +     L   N       ++   +  + +++
Sbjct: 159 TEDEEATVKRFYKEKN-RYRLQPENSTMDPIYLDN--VIVVGKVI 200


>gi|161524810|ref|YP_001579822.1| LexA repressor [Burkholderia multivorans ATCC 17616]
 gi|189350436|ref|YP_001946064.1| LexA repressor [Burkholderia multivorans ATCC 17616]
 gi|221197878|ref|ZP_03570924.1| LexA repressor [Burkholderia multivorans CGD2M]
 gi|221204564|ref|ZP_03577581.1| LexA repressor [Burkholderia multivorans CGD2]
 gi|221212987|ref|ZP_03585963.1| LexA repressor [Burkholderia multivorans CGD1]
 gi|254252408|ref|ZP_04945726.1| LexA repressor [Burkholderia dolosa AUO158]
 gi|229621228|sp|A9AIX7|LEXA_BURM1 RecName: Full=LexA repressor
 gi|124895017|gb|EAY68897.1| LexA repressor [Burkholderia dolosa AUO158]
 gi|160342239|gb|ABX15325.1| transcriptional repressor, LexA family [Burkholderia multivorans
           ATCC 17616]
 gi|189334458|dbj|BAG43528.1| repressor LexA [Burkholderia multivorans ATCC 17616]
 gi|221167200|gb|EED99670.1| LexA repressor [Burkholderia multivorans CGD1]
 gi|221175421|gb|EEE07851.1| LexA repressor [Burkholderia multivorans CGD2]
 gi|221181810|gb|EEE14211.1| LexA repressor [Burkholderia multivorans CGD2M]
          Length = 215

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I  L         T          L             G    G+   
Sbjct: 54  GVIELAAGASRGIRLLGGDDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHFACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L+ R G  I+L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLMRRPGG-IELIAENPDYENIFVKA 195


>gi|322385351|ref|ZP_08058996.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
 gi|321270610|gb|EFX53525.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
          Length = 227

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 57/217 (26%), Gaps = 14/217 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    E   L+ S LA   G+   S+   +      +    +   + +IL          
Sbjct: 7   LKEKRESQGLSQSQLASSLGISRASYFNWESGKT--KPNQNNLTKLSQILNVDPRYFESE 64

Query: 73  LDLPFSDGRTTEKKEKEIPLL---------YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            ++  +  + TEK +K                    S  F             T    + 
Sbjct: 65  YEIVETYLKLTEKNQKATLHYAKDLLNNQNSKVVEVSERFAYKVYEKLSAGTGTAYFDDG 124

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                        D        SM P Y  G + ++        G  +      G    K
Sbjct: 125 NYDTVYFNHQFDYDFASWVFGNSMEPTYENGSVALIKQTGFDYDG-AIYAIDWDGQTYIK 183

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
            +       + L+SLN  Y        +    I +I+
Sbjct: 184 KVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKIV 219


>gi|268319243|ref|YP_003292899.1| LexA repressor [Lactobacillus johnsonii FI9785]
 gi|262397618|emb|CAX66632.1| LexA repressor [Lactobacillus johnsonii FI9785]
          Length = 207

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I   I    E     P+   +     L  TS        +E +       +  + +
Sbjct: 8   KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T +                  +E         P          +    +      +P 
Sbjct: 68  EVTEKG-----------------REALGIKPKDIPVVGVVTAGQPILAVQDIDEYFPLPP 110

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                        +    +    SM+      GD +I+      N G+ ++      +  
Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDYVIVRKQSSANNGEIVVAMTEDNEAT 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       + +  ++ + +++
Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199


>gi|213969311|ref|ZP_03397449.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
 gi|301381938|ref|ZP_07230356.1| transcriptional regulator, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058610|ref|ZP_07250151.1| transcriptional regulator, putative [Pseudomonas syringae pv.
           tomato K40]
 gi|302130564|ref|ZP_07256554.1| transcriptional regulator, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925989|gb|EEB59546.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
          Length = 243

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  +  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRSGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y       G   + +         
Sbjct: 65  GPKHPNESANENTGDDKRMAIQQTRNVLRGDVEIQIYMEVESPHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GLLRVRYLYRLPNGGLRLRSHNDAEYPDEVFSGEDIAREKIRILGWIFWWS 231


>gi|257866152|ref|ZP_05645805.1| transcriptional repressor LexA [Enterococcus casseliflavus EC30]
 gi|257872482|ref|ZP_05652135.1| transcriptional repressor LexA [Enterococcus casseliflavus EC10]
 gi|257875786|ref|ZP_05655439.1| transcriptional repressor LexA [Enterococcus casseliflavus EC20]
 gi|257800086|gb|EEV29138.1| transcriptional repressor LexA [Enterococcus casseliflavus EC30]
 gi|257806646|gb|EEV35468.1| transcriptional repressor LexA [Enterococcus casseliflavus EC10]
 gi|257809952|gb|EEV38772.1| transcriptional repressor LexA [Enterococcus casseliflavus EC20]
          Length = 206

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 58/230 (25%), Gaps = 42/230 (18%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50
           M   +  +   I + I          P+   +     L  TS      ++ ++ G+    
Sbjct: 1   MAKRTENRQIEILKFIHTRVTEKGYPPTVREIGEAVQLSSTSTVHGHLSRLEKKGLI--L 58

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R P+     ++                    T    EK        P          +  
Sbjct: 59  RDPTKPRAIEL--------------------TASGLEKIDVQPASIPMLGVVTAGEPILA 98

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
             +  +   +P   +                 +  SM+      GD +I+        GD
Sbjct: 99  VEDASDFFPIPPDLANST------GSLFMLTIRGESMINAGILDGDQVIVRKQQSAQNGD 152

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K     +   I L   N       +   D+  +  ++
Sbjct: 153 IVIAMTDEDEATCKRFYKEKN-YIRLQPENDYLEPIILP--DVTILGLVV 199


>gi|320546716|ref|ZP_08041027.1| transcriptional regulator [Streptococcus equinus ATCC 9812]
 gi|320448595|gb|EFW89327.1| transcriptional regulator [Streptococcus equinus ATCC 9812]
          Length = 228

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 62/222 (27%), Gaps = 20/222 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILA------ 63
           E +        L  + LA++ G+   S+   ++   +  +      E + ++        
Sbjct: 5   EKLKNRRLELGLKQTELAKQLGISKQSYFAWEKGTSQPTKANLLKLEELLQVPHGYFSEL 64

Query: 64  --ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTV 118
             AT        +   +     +  E++  ++         +        G     ++ +
Sbjct: 65  EIATLYKQLTDQNQEHALTYVRDLLEQQAKVVSIVQEPRFAYKVYERLSAGVGTNIYDDM 124

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
               +    +        D        SM P Y  G + ++        G  +       
Sbjct: 125 DYDTVYFDKDLA-----HDFASWIDGDSMEPTYHNGSVALIRETGFDYDG-AVYAVVWNS 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +       + L+S+N  Y        +    + +I+
Sbjct: 179 QTYIKKVYREENG-LRLVSINKDYDDKFAPYDENPRIVGKIV 219


>gi|317164568|gb|ADV08109.1| putative CI protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 171

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 97  PSGSGGFFDSGVFPTGNKW-NTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
                 F+       GN + + +       +   +S                    SM P
Sbjct: 36  DDCEVPFYKDVCLSAGNGFSDEIEDYNGYKLRFSKSTLRRHGINPDDVVCVSADGDSMEP 95

Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           ++  G  L +N+A ++    ++     +G +  K+L       + + S N  Y  +T  +
Sbjct: 96  VFPDGATLGINTADKMIKDGKIYAINHSGLLRTKILQKLPDNQVRIKSYNPEYKDETASL 155

Query: 210 SDIEWIARILWAS 222
             +  I R+ W S
Sbjct: 156 DSLTVIGRVFWWS 168


>gi|134295659|ref|YP_001119394.1| LexA repressor [Burkholderia vietnamiensis G4]
 gi|166224564|sp|A4JE56|LEXA_BURVG RecName: Full=LexA repressor
 gi|134138816|gb|ABO54559.1| SOS-response transcriptional repressor, LexA [Burkholderia
           vietnamiensis G4]
          Length = 215

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I  L         T          L             G    G+   
Sbjct: 54  GVIELAAGASRGIRLLGIDDMPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L+ R G  I+L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLMRRPGG-IELIAENPDYENIFVKA 195


>gi|172057130|ref|YP_001813590.1| LexA family transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|229621205|sp|B1YE71|LEXA_EXIS2 RecName: Full=LexA repressor
 gi|171989651|gb|ACB60573.1| transcriptional repressor, LexA family [Exiguobacterium sibiricum
           255-15]
          Length = 204

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 57/227 (25%), Gaps = 38/227 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWP 53
           M   S   ++I + I    +     PS   +    GL  +S        +E R    R P
Sbjct: 1   MRKMSKRQQEILDYIVAQVKLKGYPPSVREIGEAVGLASSSTVHGHLDRLEKRGLIRRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +     +IL    E   + +                                 G    G 
Sbjct: 61  TKPRAIEILLDKPEEDHEAIVHIPVI---------------------------GKVTAGF 93

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
               +   E   P    Y              SM+      GD +I+        G+ ++
Sbjct: 94  PITAIENIEEHFPLPAHYVGNENVFMLTIDGESMINAGILDGDRVIVRQQNTAENGEIVV 153

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K       + + L   N        +   +  + +++
Sbjct: 154 AMTEDSEATVKRFF-LEDQQVRLQPENDSMDPMYFDN--VSILGKVI 197


>gi|222149262|ref|YP_002550219.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221736246|gb|ACM37209.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 219

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 10/217 (4%)

Query: 11  EAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +               AR  G+  T+    +R   E                      
Sbjct: 3   ARLREFRRAIGDPDREEFARSIGVSKTTLASYERGESEPTASVLFAYREKHGADVLWLVG 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +              +   + +  +    S G     V               R     
Sbjct: 63  GEGEMRGSQLSSAAVAERDFVLMPQYDVCASAGTGRLPVNQMPTSETAFE----RKFLRD 118

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +           +   SMLP      +LI++++       R+ +      ++ K    R 
Sbjct: 119 LGGAPDHCFLMWSTGDSMLPSIPDNALLIVDASQTTVDHGRIYVFSVGNAVLVKRANWRM 178

Query: 190 GRSIDLMSLNCC--YPVDTVEMSDIE---WIARILWA 221
              +DL+S N    YPV+T + + +E    + R+++ 
Sbjct: 179 DGRLDLISDNTAGKYPVETFDANRVEDLAVVGRVIFV 215


>gi|160916111|ref|ZP_02078318.1| hypothetical protein EUBDOL_02138 [Eubacterium dolichum DSM 3991]
 gi|158431835|gb|EDP10124.1| hypothetical protein EUBDOL_02138 [Eubacterium dolichum DSM 3991]
          Length = 194

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 37/218 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E I    + +NL+   +    G+  ++  + +    +        E + ++      
Sbjct: 2   KLSELIAYYRKLNNLSLEAIGDYVGVAKSTVKRWESGESKNIP-EAKLEKLSELFE---- 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                          T    +  P+L +  +G   F    +      +  V         
Sbjct: 57  -----------IDVPTFLNGQVKPILGYVKAGYDMFASENLL----GYEEV--------- 92

Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                    D   K Q  SM       GD++ + +   V  GD  ++     ++  K ++
Sbjct: 93  -TKKEAAQGDYYLKVQGDSMNGSRIHDGDLVYVKTCSDVENGDIAVVIIDQSEVTIKKIL 151

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219
            +   ++ LM+ N  Y     + +DI       I ++L
Sbjct: 152 KQE-HALVLMATNPAYEPRFFDENDIRNKRVQIIGKVL 188


>gi|47605793|sp|P61605|LEXA_AGRTU RecName: Full=LexA repressor
 gi|33339178|gb|AAQ14270.1|AF251129_1 LexA [Agrobacterium tumefaciens]
          Length = 239

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 15/233 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERH-NLTPS--------GLARKAGLDPTSFNKSKRFGIEGRNR 51
           M +   +++   I    E +  + PS         LA K+G+        +R  I     
Sbjct: 1   MLTRKQQELLLFIHGTNEGNPGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPN 60

Query: 52  WPSTESIFKI----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                 + K+      A+         +                      + S      G
Sbjct: 61  RARALEVIKLPEAYAGASQVRRGFSPTVIEGSLGKLASPPPAPKPAPPAEAASVAVPVMG 120

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166
               G   + +                 +    + +  SM       GD +I+ +    +
Sbjct: 121 RIAAGVPISAIQNNMHDISVPVEMIGSGEHYALEIKGDSMIEAGILDGDTVIIRNGSTAS 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD ++      +   K    +   SI L + N  Y         ++   R++
Sbjct: 181 PGDIVVALIDDEEATLKRFRRKGA-SIALEAANPAYETRIFGPDRVKIQGRLV 232


>gi|309806824|ref|ZP_07700813.1| peptidase S24-like protein [Lactobacillus iners LactinV 03V1-b]
 gi|308166798|gb|EFO68988.1| peptidase S24-like protein [Lactobacillus iners LactinV 03V1-b]
          Length = 239

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 54/227 (23%), Gaps = 27/227 (11%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++ +   H      L     +  T+ N   +         P+  ++ K+    N     L
Sbjct: 19  LNHLMSVHGTKQVDLVNALDIPKTTINGYVKGTS-----LPNMGNLQKLADYFNTLKSDL 73

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-------------------PTGN 113
                 D             L          +                          G 
Sbjct: 74  DLRFKKDADEQIDISPVYNQLTDIRKHKVYSYAQQQLDEQNSNLNEKRSIYLVGSSAAGL 133

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
             +   +       + I   +  D     +  SM P      I+  +    +  G+  + 
Sbjct: 134 PLDYGDLDAELIDLSNI--PKKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIGIF 191

Query: 174 KPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +     +  K        + I L S+N  Y         +  + +++
Sbjct: 192 EINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFAGDQVRILGKVV 238


>gi|120611007|ref|YP_970685.1| putative phage repressor [Acidovorax citrulli AAC00-1]
 gi|120589471|gb|ABM32911.1| putative phage repressor [Acidovorax citrulli AAC00-1]
          Length = 245

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 72/244 (29%), Gaps = 32/244 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I     +  LT   L+  +G++  + +  +   +    R      I   L  T + 
Sbjct: 3   LGARIRYYRNKAGLTLDQLSELSGVEMGTISALE---VRDSTRSAYARKIASALGLTVDQ 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF---------FDSGVFPTGNKWNTVG 119
           +                     P   +      G          +       G+ +N   
Sbjct: 60  LEDESADHDVGPVKAAPVRAAEPDPPYLELPGDGHEAGELVITQYQDIGGAMGHGFNLTD 119

Query: 120 VPEIRSPHNGI-----------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
            P        +           +      +       SM P++  GD L++++ I+V   
Sbjct: 120 NPPGHIRSWRVTPEWLRLNVPNHTGVKNLSIVTGFGPSMKPMFNPGDPLLVDTGIRVIDH 179

Query: 169 DRLLIKPRTGDIVAKVLISR-----RGRSIDLMSLNCCYPVDTVEMSD--IEWIARI--L 219
           + +       +   K++         G  + ++S N  YP   +   +   E + ++  +
Sbjct: 180 EGVYFFRVGDEGFIKIIQRVPQFDGPGIILRVISKNPDYPPYDLSPKNPHFEVLGKVLTV 239

Query: 220 WASQ 223
           W S+
Sbjct: 240 WRSE 243


>gi|15598203|ref|NP_251697.1| LexA repressor [Pseudomonas aeruginosa PAO1]
 gi|107102557|ref|ZP_01366475.1| hypothetical protein PaerPA_01003621 [Pseudomonas aeruginosa PACS2]
 gi|116051008|ref|YP_790165.1| LexA repressor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890794|ref|YP_002439658.1| LexA repressor [Pseudomonas aeruginosa LESB58]
 gi|254235981|ref|ZP_04929304.1| repressor protein LexA [Pseudomonas aeruginosa C3719]
 gi|254241710|ref|ZP_04935032.1| repressor protein LexA [Pseudomonas aeruginosa 2192]
 gi|296388498|ref|ZP_06877973.1| LexA repressor [Pseudomonas aeruginosa PAb1]
 gi|313108297|ref|ZP_07794329.1| repressor protein LexA [Pseudomonas aeruginosa 39016]
 gi|585396|sp|P37452|LEXA_PSEAE RecName: Full=LexA repressor
 gi|122260139|sp|Q02PH1|LEXA_PSEAB RecName: Full=LexA repressor
 gi|226736104|sp|B7UYS3|LEXA_PSEA8 RecName: Full=LexA repressor
 gi|9949109|gb|AAG06395.1|AE004726_1 repressor protein LexA [Pseudomonas aeruginosa PAO1]
 gi|3980197|emb|CAA44750.1| LexA repressor [Pseudomonas aeruginosa]
 gi|115586229|gb|ABJ12244.1| repressor protein LexA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167912|gb|EAZ53423.1| repressor protein LexA [Pseudomonas aeruginosa C3719]
 gi|126195088|gb|EAZ59151.1| repressor protein LexA [Pseudomonas aeruginosa 2192]
 gi|218771017|emb|CAW26782.1| repressor protein LexA [Pseudomonas aeruginosa LESB58]
 gi|310880831|gb|EFQ39425.1| repressor protein LexA [Pseudomonas aeruginosa 39016]
          Length = 204

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 32/220 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E H   P  + +A++ G                     + E
Sbjct: 1   MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSP---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  +         +   G    G    G    
Sbjct: 46  HLKALARK----------GAIEMTPGASRGIRIPGFEPHAANDDEGLPVIGRVAAGAPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   + +  SM  +    GD+L ++   +   G  ++ + 
Sbjct: 96  AEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARI 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
              ++  K      G  + L++ N  +    V++ + E I
Sbjct: 156 -GEEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKEQELI 193


>gi|329118988|ref|ZP_08247682.1| lambda repressor protein cI [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464861|gb|EGF11152.1| lambda repressor protein cI [Neisseria bacilliformis ATCC BAA-1200]
          Length = 215

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 7/204 (3%)

Query: 18  ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
           ER+N   +  AR  G      N+         N   S   I K L      +        
Sbjct: 7   ERYNGNQTEFARAVGKAAAQVNQWMNGHRNIGNGVAS--DIEKALDLPRGWLDDEAAPVL 64

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
                   +E  + +     +G  G       P       + +               + 
Sbjct: 65  YRSDAPVIREGWLSVPRLAATGRMGDGIEADDPDEIVDFVIVL--ETWARRQFGGNLGKL 122

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
                +  SM      GD++  +++     GD + +      +  K L +     ++++S
Sbjct: 123 RIINAKGDSMQDTINPGDVVFADTSADRYDGDGIYVILTPSGLRIKRLHALVSGGLNIIS 182

Query: 198 LNCCYPVDTVE---MSDIEWIARI 218
            N  YPV+T+E   + ++    R+
Sbjct: 183 DNKAYPVETLEGAALENLRICGRV 206


>gi|195978131|ref|YP_002123375.1| Phage transcriptional repressor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974836|gb|ACG62362.1| Phage transcriptional repressor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 232

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 21/232 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  FS  +    +       +++   L +  G++  + +  ++     R      E +  
Sbjct: 1   MLMFSGIQ----LKTARLSRHISQEQLGQLLGVNKMTISNWEKEKN--RPNQKHFEELVS 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I     E   Q   L     + +   ++++               +        +     
Sbjct: 55  IFQLPAEYFYQENRLLLPYSQLSAFNKEKVISYSESLLEQQEKMIALPAKQKTLYPYRVY 114

Query: 121 PEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
             + +     Y                 D        SM P Y  G+++++        G
Sbjct: 115 ERLSAGTGYSYFGDGNFDVVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQDSFDYDG 174

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +           K +       + L+SLN  YP       D    I +I+
Sbjct: 175 -AIYAVEWEEQTYIKKVYREENG-LRLVSLNKKYPDKFASFDDNPRIIGKII 224


>gi|78043201|ref|YP_360517.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995316|gb|ABB14215.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 254

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 27/210 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + ++    +LT + LA+   +  ++ +  +        R P  +++ K+    N + 
Sbjct: 4   GQRLRQLRTERDLTQAELAKLLSIGESTISFYESN-----KRQPDFDTLIKLSNFFNVS- 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                        T++  K I      P          +    N    + +P        
Sbjct: 58  ------IDFLLGRTDESNKFIQNTKTIPLLGTIRAGIPLLAEENWIEEIALPAGI----- 106

Query: 130 IYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLL--IKPRTGDIVAKVLI 186
                  D   + +  SM+      GDI     +     G  +   +   T     K  +
Sbjct: 107 -----KADFALQVEGESMIYAGIFPGDIAFFKQSETATNGQIVAAGVVEETWKANLKFYV 161

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              G++  L S N  Y    +     + I 
Sbjct: 162 KTNGKAF-LRSANPKYKDIEITP-QHKIIG 189


>gi|323517813|gb|ADX92194.1| hypothetical protein ABTW07_1765 [Acinetobacter baumannii
           TCDC-AB0715]
 gi|323518836|gb|ADX93217.1| hypothetical protein ABTW07_2793 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 241

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I E I    +  NL  S  + K GL   + +  K+            E++ +
Sbjct: 1   MIM---ESIAERIQAALDYANLKWSAASLKLGLSAQAASNWKKG-------KIGKETLKE 50

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF----------PPSGSGGFFDSGVFP 110
           + A T  +   LLD   S     +  E                  P S          F 
Sbjct: 51  LAALTGVSAGWLLDGSGSMIELADNPENADAYRPVMAWEAPDDLDPNSFMIIPHVDVKFS 110

Query: 111 TGNKWNTVGVPE--------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
            GN       P              +                 SM P    G ++I++ +
Sbjct: 111 AGNGRLVEFEPTTRMTGCAQRMEWFHKKKVSPKNLVEVDVDGDSMEPRIPSGSVVIIDKS 170

Query: 163 I---QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +   +     ++       ++  K L  R   ++ + S N  Y  + VE  D+E I  I
Sbjct: 171 VNRLEQVQNRKVYAIRYGDELKIKRLSRRYDGALIIDSDNPSYEREIVEPQDLEHIGII 229


>gi|323126526|gb|ADX23823.1| transcriptional regulator [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 227

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 61/223 (27%), Gaps = 21/223 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   LT   +A K G+   +++  +R   E     PS E + ++    N    
Sbjct: 5   EKLKERRKELKLTQKDIAEKLGISYQAYSAWERGVKE-----PSAEKVSQLEKLLNVPKG 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPHNG 129
              ++       T     +  ++ +            V      ++       + +    
Sbjct: 60  YFTEIEIVRLYNTLSSSGKEKVVTYARDLVQEESQPKVVSISEKRFEYHVYERMSAGIGA 119

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                              D        SM P Y+ G + ++        G  +      
Sbjct: 120 SVYGDRNYDTVYFNEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCN 178

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                K +       + L+S+N  Y    +   +    +  I+
Sbjct: 179 SQTYIKRVYREEDG-LRLVSINPKYKDLFISYDEDPRVVGIIV 220


>gi|313894534|ref|ZP_07828098.1| repressor LexA [Veillonella sp. oral taxon 158 str. F0412]
 gi|313440930|gb|EFR59358.1| repressor LexA [Veillonella sp. oral taxon 158 str. F0412]
          Length = 223

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 21/222 (9%)

Query: 5   SHKKIWEAI-DRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I + I D +   +   T   +    GL  TS  +S    +E      R P+     
Sbjct: 11  KQRRILDFIKDSLHNEYRCPTVREICTHVGLSSTSTVQSHLNALEKFGYIKRDPNKNRAI 70

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +L     +I    +   S             +              G    G     V 
Sbjct: 71  TVLEDAKPSISVDGNEISSSDNFEFLGAGLKQVPLI-----------GTVQAGMPITAVE 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E            +     + Q  SM+ +   +GD+LI+      N GD ++ +    
Sbjct: 120 NLESTLTLPVQLTGDSDCFLLRVQGESMMNIGMYEGDMLIVRHQNTANNGDVVVARID-D 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
           +   K         I L   N  +    V+   IE   I  +
Sbjct: 179 EATVKRFYK-ENGHIRLQPENDDFDPIIVDDCHIEGLVIGLV 219


>gi|189405314|ref|ZP_02814730.2| regulatory protein [Escherichia coli O157:H7 str. EC869]
 gi|261223695|ref|ZP_05937976.1| putative transcriptional regulator from phage origin [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261255895|ref|ZP_05948428.1| putative transcriptional regulator from phage origin [Escherichia
           coli O157:H7 str. FRIK966]
 gi|300817229|ref|ZP_07097447.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|331680492|ref|ZP_08381151.1| regulatory protein [Escherichia coli H591]
 gi|331681931|ref|ZP_08382564.1| regulatory protein [Escherichia coli H299]
 gi|189370740|gb|EDU89156.1| regulatory protein [Escherichia coli O157:H7 str. EC869]
 gi|300530205|gb|EFK51267.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|309700480|emb|CBI99774.1| putative cI regulatory protein [Escherichia coli ETEC H10407]
 gi|331071955|gb|EGI43291.1| regulatory protein [Escherichia coli H591]
 gi|331081133|gb|EGI52298.1| regulatory protein [Escherichia coli H299]
          Length = 230

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 72/227 (31%), Gaps = 17/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  N+  + LA   G+D  + ++ +     G+ +  + +++  I  +   
Sbjct: 2   NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGV 57

Query: 68  TICQ-----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            I                   E   +   +             +G+   G+  + +   E
Sbjct: 58  DIADLFTSAHKSNTVYKNSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIE 117

Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            R+ +                  +  SM P    GD++ ++ +I    GD + +      
Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           I  K L       + ++S N  Y    +            ++L  SQ
Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222


>gi|317050695|ref|YP_004111811.1| helix-turn-helix domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945779|gb|ADU65255.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5]
          Length = 224

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 28/226 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + +   LT    A   G  P   +++++       + P  E + +I    N  I 
Sbjct: 4   QRLRELRKMLGLTQGEFAFHVGTSPGYVSEAEQG-----KKVPGGEILRRICEKLNANIN 58

Query: 71  QLLDLPFSDGRTTEK---------------KEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            LL                               +       S S G     +      W
Sbjct: 59  WLLTGSGDMFLEGHAGSLPSGSAPVRTTEYDFVSVTPYRAWESQSHGACVWQMDAHSILW 118

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
                 E     +              Q  +M P  R GDIL+++ + +    + + +  
Sbjct: 119 LYRPWIECHLRISKEVV-----WSLCMQGDNMDPTLRAGDILLVDGSCKEVAIEGIYLIC 173

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219
             G    + +    G ++ L + N  Y    +++S   +E I R++
Sbjct: 174 CDGMHAVRRVQRM-GSTLTLSNDNSAYRDTDLDVSRKGLEIIGRVV 218


>gi|313884205|ref|ZP_07817971.1| repressor LexA [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620652|gb|EFR32075.1| repressor LexA [Eremococcus coleocola ACS-139-V-Col8]
          Length = 205

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54
           M S S   + I   I +  E +   P+   +  + GL  TS       R    G     S
Sbjct: 1   MKSLSSKQENILICIYQAIESNGYPPTVREICNQVGLASTSTVHGHLTRLEKAGYISRDS 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +++    L         +                        P        + +      
Sbjct: 61  SKTRAIELTDLALQALDIQPQQ-------------------IPLLGKVAAGAPILAVEEA 101

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
            +   +P     ++            + +  SM+ +    GD++ +      N GD ++ 
Sbjct: 102 TDYYPIPPHLQHYDAA-----DLFMLQIKGESMINVGIMDGDLITVRKQSTANNGDIVVA 156

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K    +      L   N       +  +    + +++
Sbjct: 157 MTEDDEATCKTFFKKSD-HYVLRPENDSMDDIILTKA--TILGKVV 199


>gi|73667431|ref|YP_303447.1| transcriptional regulator [Ehrlichia canis str. Jake]
 gi|72394572|gb|AAZ68849.1| transcriptional regulator [Ehrlichia canis str. Jake]
          Length = 211

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 71/216 (32%), Gaps = 21/216 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++  +    LA KA +  +           G++  P+++ +  I    N +
Sbjct: 10  IVTRMKYQMDKMGINARELAHKADVGKSFVYDIL----SGKSTNPTSKKLMAIAKVLNVS 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+                          +           G   ++  V    S + 
Sbjct: 66  LSYLISDDNYTYGQGN--------------MNILPVYDLELENGKISSSGDVNLYLSSNI 111

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS- 187
            + +       +  +  SM+P     D+++++   ++     L +   T  +  + L   
Sbjct: 112 NLTSNMKNLRVYYVKGDSMIPTLMNQDVVLVDIGDKIPHPAGLFVIVDTVGVSIRRLEYL 171

Query: 188 RRGRSIDL--MSLNCCYPVDTVEMSDIEWIARILWA 221
           R  + I L  +S N  Y      + D+E + R++W 
Sbjct: 172 RENQKIKLHVVSDNKKYSSYECHLEDMEILGRVIWY 207


>gi|309810082|ref|ZP_07703928.1| peptidase S24-like protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169581|gb|EFO71628.1| peptidase S24-like protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 229

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 57/231 (24%), Gaps = 20/231 (8%)

Query: 4   FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +K+I+   +     ++++  + L    G    + +       +   R    E +    
Sbjct: 3   LGNKEIFSQNLKYYMYKYDVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60

Query: 63  AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGG----------FFDSGVF 109
                 + +       D           ++  +  +                  +  G  
Sbjct: 61  NIKKSDLVEKQTDKQIDILPVYNQLTDIRKHKVYSYAHPQLDEQNSNLNKKRSIYVVGTS 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
             G               +        D     +  SM P      I+  +    +  G+
Sbjct: 121 AAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGE 177

Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 178 IGIFEINGSAVTCKKYYVDYNSKKIILKSINPKYEPMYFAKDQVRILGKVV 228


>gi|301300956|ref|ZP_07207121.1| repressor LexA [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851423|gb|EFK79142.1| repressor LexA [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 206

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 38/222 (17%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESI 58
              I   I          P+   +    GL  TS      +K +  G+    R P+    
Sbjct: 8   QHDILRYIFSHVSDSGYPPTVREICNAVGLSSTSTVHGHLSKLESKGLI--KRDPTKPRA 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +I             L   +       + +IP++    +G        +       +  
Sbjct: 66  IEI------------TLAGLEMLDELPNKTQIPIVGTVTAG------EPILAVEENRDYF 107

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P         +           +  SM+      GD +I+      N G+ ++     
Sbjct: 108 PLPP-------YFESADDLFMLSIRGESMINAGILDGDQVIIRKQSSANNGEIVIAMTEE 160

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K           L   N       +   ++  + +++
Sbjct: 161 NEATCKRFFK-EDGYYRLQPENDTMDPIIL--ENVTILGKVV 199


>gi|225870539|ref|YP_002746486.1| phage repressor-like protein [Streptococcus equi subsp. equi 4047]
 gi|225699943|emb|CAW93888.1| putative phage repressor-like protein [Streptococcus equi subsp.
           equi 4047]
          Length = 232

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 21/232 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  FS  +    +       +++   L +  G++  + +  ++     R      E +  
Sbjct: 1   MLMFSGIQ----LKTARLSRHISQEQLGQLLGVNKMTISNWEKEKN--RPNQKHFEELVS 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I     E   Q   L     + +   ++++               +        +     
Sbjct: 55  IFQLPAEYFYQENRLLLPYSQLSASNKEKVISYSESLLEQKEKIIALPAKKKTLYPYRVY 114

Query: 121 PEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
             + +     Y                 D        SM P Y  G+++++        G
Sbjct: 115 ERLSAGTGYSYFGDGNFDVVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQDSFDYDG 174

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +           K +       + L+SLN  YP       D    I +I+
Sbjct: 175 -AIYAVEWEEQTYIKKVYREENG-LRLVSLNKKYPDKFASFDDNPRIIGKII 224


>gi|237738097|ref|ZP_04568578.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419977|gb|EEO35024.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 227

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 63/217 (29%), Gaps = 16/217 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +K+   I    +   +  + ++ K G+  + +++ +     G+    +   + KI    
Sbjct: 15  REKLGAYIKARRDELAIGLNQISVKTGVASSLWSRLEN----GKVLKINPFLLKKIGEGL 70

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT--GNKWNTVGVPEI 123
                +L  +         +    I L             S  +     +  + + +P  
Sbjct: 71  KIDYKELYKIVGYLDEDKNEIIGNIDLNLEYKKVPLYSSISAGYGACESDVIDYIALPM- 129

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                 + A        +    SM        I+ +    +V    ++       + + K
Sbjct: 130 ------VNAFSGDVFAVRVNGDSMEHTIENHSIVFIKRDSEVAN-KKIGAFLLNNEALLK 182

Query: 184 VLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
                    + L S N  YP   V E  D   + R +
Sbjct: 183 RYY-ITDNGVFLRSDNREYPDIRVREHDDFIIVGRYI 218


>gi|150390298|ref|YP_001320347.1| SOS-response transcriptional repressor, LexA [Alkaliphilus
           metalliredigens QYMF]
 gi|166990795|sp|A6TR70|LEXA_ALKMQ RecName: Full=LexA repressor
 gi|149950160|gb|ABR48688.1| SOS-response transcriptional repressor, LexA [Alkaliphilus
           metalliredigens QYMF]
          Length = 206

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 60/218 (27%), Gaps = 32/218 (14%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
             KI   +     +    PS   + +  GL  TS       +  ++G  R          
Sbjct: 9   QIKILHYMKSEISQKGYPPSVREICQAVGLKSTSTAHGHLSKLELKGYIRR--------- 59

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             AT     ++L           K+   +P++    +G             N  +T  +P
Sbjct: 60  -DATKPRAIEILSQGDEQSPYIHKEIINVPIVGKVTAGQPI------LAVENIEDTFPLP 112

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                    +           +  SM+     + D +++        GD ++        
Sbjct: 113 ID-------FVDSESTFILTVKGDSMIDDGIHENDYVVVRQQSDARNGDIVVALID-DSA 164

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K     +   I L   N       V   D+  + ++
Sbjct: 165 TVKRFYREKD-HIRLQPSNTSMSPILV--DDVTILGKV 199


>gi|152984099|ref|YP_001347524.1| LexA repressor [Pseudomonas aeruginosa PA7]
 gi|166224640|sp|A6V389|LEXA_PSEA7 RecName: Full=LexA repressor
 gi|150959257|gb|ABR81282.1| LexA repressor [Pseudomonas aeruginosa PA7]
          Length = 204

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 32/220 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E H   P  + +A++ G                     + E
Sbjct: 1   MQKLTPRQSEILSFIKRCLEDHGFPPTRAEIAQELGFKSP---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  +         +   G    G    G    
Sbjct: 46  HLKALARK----------GAIEMTPGASRGIRIPGFEPHAANDDEGLPVIGRVAAGAPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   + +  SM  +    GD+L ++   +   G  ++ + 
Sbjct: 96  AEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVAR- 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
              ++  K      G  + L++ N  +    V++ + E I
Sbjct: 155 LGEEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKEQELI 193


>gi|331002466|ref|ZP_08325984.1| LexA repressor [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410282|gb|EGG89716.1| LexA repressor [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 202

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 63/224 (28%), Gaps = 33/224 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   K+I+  I          PS   +    GL  TS   +    +E +       
Sbjct: 1   MDTLTDKQKEIFNVIKDSILNKGYPPSVREIGELVGLKSTSSVHAHLNSLEKKGYIRKDP 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +  + +  T+++                        +   P          +  + N  +
Sbjct: 61  TKPRTIEITDDSFNLTRRE-----------------VVNVPMVGTVAAGMPILASENITD 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +P    P+             K +  SM+ +    GD +I++       GD ++   
Sbjct: 104 YFPIPSELLPNT-------DIFMLKVKGDSMINVGIHDGDQIIVSKQNTAKNGDIIVAL- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  K           L   N       V+  ++  + +++
Sbjct: 156 VEDSATVKTFYK-ENNFYRLQPENDFMEPILVK--EVSILGKVI 196


>gi|94988166|ref|YP_596267.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
 gi|94993958|ref|YP_602056.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750]
 gi|94541674|gb|ABF31723.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
 gi|94547466|gb|ABF37512.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750]
          Length = 249

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 40/240 (16%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  +    NLT   LA + G   ++ +K ++     +      E I K      + +   
Sbjct: 11  VKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYE--IEEIAKFFGVEPKKMMFG 68

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF----------------------------- 103
            +    + +          +                                        
Sbjct: 69  DNPTSINPQVELIPSTLQKINSTSSQLEHSRQIIVLDTAETLLEQQKEIKNNEDTIAELF 128

Query: 104 ---FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
              +       G       V   +      Y     D        SM P Y  GD + + 
Sbjct: 129 SYNYYDHAASAGTGQYLNDVQVEKIELPVDY---DADFVIPVYGDSMEPKYHSGDYVFIK 185

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            ++++  GD  +     GD   K L+     +  L SLN  Y    V+   D   I  ++
Sbjct: 186 LSVELADGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNGKYEDIPVDRDSDFRIIGEVV 243


>gi|332523855|ref|ZP_08400107.1| putative HTH-type transcriptional regulator PrtR [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315119|gb|EGJ28104.1| putative HTH-type transcriptional regulator PrtR [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 230

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 21/230 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------------RN 50
            FS K+    +  + ++  ++   L+ + G+   + +  ++                 R 
Sbjct: 1   MFSGKQ----LKAIRQKEKMSQENLSDQIGVSKMTISNWEQGKNNPNQKHLAQLVAIFRV 56

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                 S   IL    +          +  +T   K+ ++  +  P      +       
Sbjct: 57  SEDYFNSYSTILIPYKQLNSDNQKKVVTFSQTLLAKQSKVIAISTPKKKLYRYRVYESLS 116

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
            G  ++     +              D        SM P Y  G+++++        G  
Sbjct: 117 AGGGFSY--FGDGNYDEVFYDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQEGFDYDG-A 173

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           +      G    K +       + L+SLN  Y        +    I +I+
Sbjct: 174 IYAVEWDGQTYIKKVYREENG-LRLVSLNKKYSDKFAPFDENPRIIGKII 222


>gi|116629450|ref|YP_814622.1| LexA repressor [Lactobacillus gasseri ATCC 33323]
 gi|282850837|ref|ZP_06260211.1| repressor LexA [Lactobacillus gasseri 224-1]
 gi|311110902|ref|ZP_07712299.1| repressor LexA [Lactobacillus gasseri MV-22]
 gi|122273612|sp|Q044D8|LEXA_LACGA RecName: Full=LexA repressor
 gi|116095032|gb|ABJ60184.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
           33323]
 gi|282557789|gb|EFB63377.1| repressor LexA [Lactobacillus gasseri 224-1]
 gi|311066056|gb|EFQ46396.1| repressor LexA [Lactobacillus gasseri MV-22]
 gi|329667097|gb|AEB93045.1| LexA repressor [Lactobacillus johnsonii DPC 6026]
          Length = 207

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I   I    E     P+   +     L  TS        +E +       +  + +
Sbjct: 8   KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T +                  +E         P          +    +      +P 
Sbjct: 68  EVTEKG-----------------REALGIKPKDIPIVGVVTAGQPILAVQDIDEYFPLPP 110

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                        +    +    SM+      GD +I+      N G+ ++      +  
Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDHVIVRKQSSANNGEIVVAMTEDNEAT 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       + +  ++ + +++
Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199


>gi|218134334|ref|ZP_03463138.1| hypothetical protein BACPEC_02227 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989719|gb|EEC55730.1| hypothetical protein BACPEC_02227 [Bacteroides pectinophilus ATCC
           43243]
          Length = 231

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 71/233 (30%), Gaps = 24/233 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           K + + I +  + H L  S LA++       +   S +  +        R     ++ +I
Sbjct: 2   KDLGKTIAKYRKEHKLNQSQLAKELENYDIYVKQNSISAWELGTATPNARQFL--ALCEI 59

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVGV 120
           L   +     +   P +  R   +      L Y     S G +      P          
Sbjct: 60  LEIYDIYTDFIGQSPLNPFRNLNETGMNKVLEYIRDLESTGNYKPADIIPIHVIQERKVF 119

Query: 121 PEIRSPHNGIYAIQTQD-------------TRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
               S   G +    +                      SM P Y   D++ +     ++ 
Sbjct: 120 YNTVSAGTGSFLDSDEYEMISSPDIPEAATFGVYVDGDSMEPRYHNKDLIWIEQTACLDD 179

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           G+  +     G+   K   + R  +  L+SLN  Y    V E S  +   R+L
Sbjct: 180 GEIGIFYLD-GNAYVKKFQNNRLGTY-LISLNKKYDPIPVTENSSFKIFGRVL 230


>gi|300744007|ref|ZP_07073027.1| repressor LexA [Rothia dentocariosa M567]
 gi|300380368|gb|EFJ76931.1| repressor LexA [Rothia dentocariosa M567]
          Length = 222

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 65/220 (29%), Gaps = 23/220 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPSTESIFK 60
            +KI +AI    E+    PS   +    GL   +S  ++  R    G   R P      +
Sbjct: 14  QQKILDAIRTEIEQKGYPPSMRQIGDIVGLASLSSVTHQLGRLEKMGYIRRDPKLPRAIE 73

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    +++    +PL+    +G             +  + + +
Sbjct: 74  ILDDIESEGASAHFPELPTFEVSDEDMVPVPLVGRIAAGGPIT------AEQSVEDVLSL 127

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P              +    + +  SM+      GD +++      + GD +       +
Sbjct: 128 PRQLVGS-------GKLFMLRVKGDSMIDAAICDGDWVVVREQHTADNGDIVAALLD-DE 179

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              KV   +      L+  N  Y            + +++
Sbjct: 180 ATVKVF-RQVDGHTWLLPRNSQYEPIL--GDRATVMGKVV 216


>gi|116748371|ref|YP_845058.1| SOS-response transcriptional repressor LexA [Syntrophobacter
           fumaroxidans MPOB]
 gi|171460792|sp|A0LGS1|LEXA_SYNFM RecName: Full=LexA repressor
 gi|116697435|gb|ABK16623.1| SOS-response transcriptional repressor, LexA [Syntrophobacter
           fumaroxidans MPOB]
          Length = 206

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 30/215 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            ++++  +    +++  +PS                +        R  S  ++FK L   
Sbjct: 7   QERVYGFVRDYIQKNGYSPS---------------YEEIRQNLGFR--SLNAVFKHLKQL 49

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            +                        +              GV   G     V +PE   
Sbjct: 50  EQRGYVQSLWKNKKRALELLPLHTGAV---------SIPFLGVVAAGTPIEAVEIPES-V 99

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +     +   + +  SM     R+GDILI+    +   G  ++     G+   K 
Sbjct: 100 EVPESFLANGNNFALRVKGDSMIEEGIREGDILIVARQSRAENGQTVVAL-VQGEATVKK 158

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +RG  I+L   N            +E +  ++
Sbjct: 159 FY-QRGEEIELRPANSRMQPIHARADAVEVVGTVV 192


>gi|309812719|ref|ZP_07706463.1| repressor LexA [Dermacoccus sp. Ellin185]
 gi|308433414|gb|EFP57302.1| repressor LexA [Dermacoccus sp. Ellin185]
          Length = 238

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 23/228 (10%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTE 56
           T   HK +   I R  +     PS   +    GL   S    +   +E +    R P+  
Sbjct: 16  TPRQHK-VLTVIRRSVDERGYPPSLREIGEAVGLTSPSSVAHQLAALERKGYLRRDPNRP 74

Query: 57  SIFKILAA-----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
              ++++      T       +               E P   + P          +   
Sbjct: 75  RAMEVVSPDSGAATRGYRGNAVSALSESQHDETGSGDERPTPSYVPVVGRIAAGGPILAE 134

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
               +   +P              +    +    SM+     +GD +++        G+ 
Sbjct: 135 QAVEDVFPLPRQIVG-------DGELFLLRVVGDSMIDAAICEGDWVVVRRQADAANGEI 187

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +     + +   K L    G++  LM  N  Y     +      + ++
Sbjct: 188 VAALLDS-EATVKTLRRSEGKT-WLMPANEAYSPI--DGDHASIMGKV 231


>gi|262282768|ref|ZP_06060536.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA]
 gi|262262059|gb|EEY80757.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA]
          Length = 225

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSALYTYPLLTLPHKKEVDQFASRLLERQRKVSSLTSYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P+Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPMYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPTIVGIVV 217


>gi|145295835|ref|YP_001138656.1| LexA repressor [Corynebacterium glutamicum R]
 gi|172044440|sp|A4QET8|LEXA_CORGB RecName: Full=LexA repressor
 gi|140845755|dbj|BAF54754.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 253

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 20/223 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57
            ++I E I          PS   +   AGL  TS    +   +E +         P    
Sbjct: 36  QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 95

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +    + +            +      +      F P        S +    N    
Sbjct: 96  VRHLPETESRSSKAATQAKSKAPQAGAHDPELAGQTSFVPVVGKIAAGSPITAEQNIEEY 155

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P                   +    SM       GD +++ S      G+ +     
Sbjct: 156 YPLPAEIVG-------DGDLFMLQVVGESMRDAGILTGDWVVVRSQPVAEQGEFVAAMID 208

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K         I L+  N  +        + E + +++
Sbjct: 209 -GEATVKEFHKDSSG-IWLLPHNDTFAPI--PAENAEIMGKVV 247


>gi|330876959|gb|EGH11108.1| repressor protein c2 [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 362

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        +    +A + G+  ++  +          +    E+++ + 
Sbjct: 142 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 193

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121
            AT      L           E        L   P+ S  +        G+    V   P
Sbjct: 194 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 250

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 251 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 310

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 311 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 350


>gi|19553134|ref|NP_601136.1| LexA repressor [Corynebacterium glutamicum ATCC 13032]
 gi|62390770|ref|YP_226172.1| LexA repressor [Corynebacterium glutamicum ATCC 13032]
 gi|41326108|emb|CAF20271.1| PUTATIVE LEXA REPRESSOR TRANSCRIPTION REGULATOR PROTEIN
           [Corynebacterium glutamicum ATCC 13032]
          Length = 253

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 20/223 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57
            ++I E I          PS   +   AGL  TS    +   +E +         P    
Sbjct: 36  QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 95

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +    + +            +      +      F P        S +    N    
Sbjct: 96  VRHLPETESRSSKAATQAKSKAPQAGVHDPELAGQTSFVPVVGKIAAGSPITAEQNIEEY 155

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P                   +    SM       GD +++ S      G+ +     
Sbjct: 156 YPLPAEIVG-------DGDLFMLQVVGESMRDAGILTGDWVVVRSQPVAEQGEFVAAMID 208

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K         I L+  N  +        + E + +++
Sbjct: 209 -GEATVKEFHKDSSG-IWLLPHNDTFAPI--PAENAEIMGKVV 247


>gi|325277308|ref|ZP_08142935.1| LexA repressor [Pseudomonas sp. TJI-51]
 gi|324097574|gb|EGB95793.1| LexA repressor [Pseudomonas sp. TJI-51]
          Length = 202

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 60/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                              +   +   G    G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPG-----------FEAKADESGLPIIGRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AEQHIEQSCNINPAFFHPQADYLLRVHGMSMKDVGILDGDLLAVHTCREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ +
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKE 187


>gi|284799995|ref|ZP_05985430.2| putative repressor protein [Neisseria subflava NJ9703]
 gi|284796327|gb|EFC51674.1| putative repressor protein [Neisseria subflava NJ9703]
          Length = 239

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 66/224 (29%), Gaps = 33/224 (14%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
           P+ +AR  G+ P  FN+            P+TE++ KI  +T   +  LL          
Sbjct: 18  PAVIARDIGMSPPGFNRIWYNDG-----LPNTETLIKIQESTGCDLNWLLTGKGLPYLDK 72

Query: 84  EKKEKEIPLLYF-------------PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP---- 126
            + E                            F           +      E        
Sbjct: 73  ARPENAGAFSVSRNSDGITDTMGNPVDLSEFVFVPRYNVAAAAGYGAPVFGEEPLFCLAF 132

Query: 127 -----HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                 N +     + +    +  SM  +   GD +++N A   +  D L +     D+ 
Sbjct: 133 RKYWIDNYVTKQPEKLSVITVKGDSMEGVLNHGDSILINHAET-DPRDGLYVLRIGNDLF 191

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILWA 221
            K +       + + S N  Y    +++     DI  I R+ W 
Sbjct: 192 VKRVQRIP-GKLLVTSENPRYAPFEIDLSNAQDDIAIIGRVEWY 234


>gi|28867949|ref|NP_790568.1| transcriptional regulator [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851185|gb|AAO54263.1| transcriptional regulator, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331018885|gb|EGH98941.1| transcriptional regulator, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 243

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  +  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRSGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y       G   + +         
Sbjct: 65  GPKHPNESANENTGDDKRMAIQQTRNVLRGDVEIQIYMEVESPHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSGEDIAREKIRILGWIFWWS 231


>gi|300861339|ref|ZP_07107426.1| repressor LexA [Enterococcus faecalis TUSoD Ef11]
 gi|300850378|gb|EFK78128.1| repressor LexA [Enterococcus faecalis TUSoD Ef11]
          Length = 206

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 56/225 (24%), Gaps = 32/225 (14%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           M   +  +   + + I    E     P+   + +   L  TS        +E +      
Sbjct: 1   MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            +  + +  T E +                 EK        P          +       
Sbjct: 61  PTKPRAIELTPEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEAS 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +   +P                     +  SM+      GD +I+      N GD ++  
Sbjct: 104 DFFPLPPDLRTEENAL------FMLMIRGESMINAGILDGDQVIVRKQSNANNGDIVIAM 157

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K         I L   N       ++   +  + +++
Sbjct: 158 TDEDEATCKRFFR-EVDHIRLQPENDALAPILLDN--VTILGKVV 199


>gi|169824444|ref|YP_001692055.1| transcriptional repressor [Finegoldia magna ATCC 29328]
 gi|302380660|ref|ZP_07269125.1| repressor LexA [Finegoldia magna ACS-171-V-Col3]
 gi|303233784|ref|ZP_07320438.1| repressor LexA [Finegoldia magna BVS033A4]
 gi|229621216|sp|B0S1C5|LEXA_FINM2 RecName: Full=LexA repressor
 gi|167831249|dbj|BAG08165.1| transcriptional repressor [Finegoldia magna ATCC 29328]
 gi|302311603|gb|EFK93619.1| repressor LexA [Finegoldia magna ACS-171-V-Col3]
 gi|302495218|gb|EFL54970.1| repressor LexA [Finegoldia magna BVS033A4]
          Length = 208

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 31/220 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              +I + I R  +     P+   +     ++ TS   N   +  ++G  R    ++   
Sbjct: 8   KQIEILKFIKRYIDYKGYPPAIREIGDSLNINSTSTVHNNILKLEMKGYLRRDPLKNRAL 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +  +     +      +       K +    +                   N  +T  +
Sbjct: 68  EIIDSVYEEQENEIKKETIDVPIVGKVQAGMPI---------------LAIENVEDTFPL 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P         Y  Q      K Q  SM       GD +I+      N GD ++       
Sbjct: 113 PIE-------YTSQGIVFILKVQGESMIEDGILNGDKIIVRKQNTANNGDIVVALMD-ES 164

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I+L   N       V+  D+E + +++
Sbjct: 165 ATVKRFYRHSD-HIELRPSNSTMYPIIVK--DVEILGKVI 201


>gi|328945610|gb|EGG39761.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK1087]
          Length = 225

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSALYTYPLLTSPHKKEVDQFASRLLERQRKVSSLTAYKVLSVELAAGRGNS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|296103057|ref|YP_003613203.1| putative repressor protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057516|gb|ADF62254.1| putative repressor protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 290

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 19/224 (8%)

Query: 11  EAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + ++R+   +     T + +A K G+ P+  ++         +R        +I ++   
Sbjct: 60  QNLNRLIGEYIVEGYTKAQIAEKIGIPPSQLSQL---SGSNASRNIGDIIARRIESSMGL 116

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR--- 124
               +         +  K    I  L               F  G+    +  PEI    
Sbjct: 117 PHGWMDSKRADVDASGTKPNFFINPLTKNQQQYRIEVMDTEFSCGSGRMNMDYPEIVKSI 176

Query: 125 ------SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                 +         T          SML     GD+++++  +    GD +       
Sbjct: 177 ELDPEEAKRMFGGRSPTSLKICTVVGDSMLGTIFPGDLVVIDVTVNRLIGDGIYAFVYGD 236

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
           +   K L   +   + ++S N  Y    V   + S+      ++
Sbjct: 237 NFHIKRLQLLKD-KLVVISDNSTYEKWFVSETDQSEFHIQGLVV 279


>gi|153212385|ref|ZP_01948167.1| repressor protein C2 [Vibrio cholerae 1587]
 gi|124116593|gb|EAY35413.1| repressor protein C2 [Vibrio cholerae 1587]
          Length = 219

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 59/213 (27%), Gaps = 13/213 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    + + +T + LA +     ++          G NR PS E I  ++         L
Sbjct: 7   VKARMKDNGITQAVLAERLDKSQSAIAHWL-----GGNRKPSIEEIAAMMKIVGLDHVTL 61

Query: 73  LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                 +             +                             EI   +    
Sbjct: 62  NSDGLVEYPDEAWANISRPQIQPSYQKSFPVLSSVQAGMWSEAIEPYTAEEINEWYETTE 121

Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186
               +    + +  SM       + +G ++++++      G  ++       +   K L+
Sbjct: 122 RTSERCFWLRVEGDSMTSGVGVSFPEGTLVLVDTERDHQNGSLVVAKLTDVNEATFKKLV 181

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G+   L  LN  Y    V  +  + I  ++
Sbjct: 182 IDAGQKY-LKPLNPSYNAIAVNGN-CKIIGVVI 212


>gi|325688189|gb|EGD30208.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72]
 gi|327469056|gb|EGF14528.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK330]
          Length = 225

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSTLYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|153803760|ref|ZP_01958346.1| repressor protein C2 [Vibrio cholerae MZO-3]
 gi|124120705|gb|EAY39448.1| repressor protein C2 [Vibrio cholerae MZO-3]
          Length = 221

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 59/213 (27%), Gaps = 13/213 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    + + +T + LA +     ++          G NR PS E I  ++         L
Sbjct: 9   VKARMKDNGITQAVLAERLDKSQSAIAHWL-----GGNRKPSIEEIAAMMKIVGLDHVTL 63

Query: 73  LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                 +             +                             EI   +    
Sbjct: 64  NSDGLVEYPDEAWANISRPQIQPSYQKSFPVLSSVQAGMWSEAIEPYTAEEINEWYETTE 123

Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186
               +    + +  SM       + +G ++++++      G  ++       +   K L+
Sbjct: 124 RTSERCFWLRVEGDSMTSGVGVSFPEGTLVLVDTERDHQNGSLVVAKLTDVNEATFKKLV 183

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G+   L  LN  Y    V  +  + I  ++
Sbjct: 184 IDAGQKY-LKPLNPSYNAIAVNGN-CKIIGVVI 214


>gi|118443690|ref|YP_878184.1| LexA repressor [Clostridium novyi NT]
 gi|171472987|sp|A0Q0N2|LEXA_CLONN RecName: Full=LexA repressor
 gi|118134146|gb|ABK61190.1| LexA repressor [Clostridium novyi NT]
          Length = 204

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 42/222 (18%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNR-WPSTE 56
              +I+E I          PS   + +  GL  TS      +K ++ G+  R+   P T 
Sbjct: 8   KQIEIYEFIKEQIIEKGYPPSVREICKGVGLSSTSSVHGHLSKLEKKGLIRRDSTKPRTI 67

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            I K                         +      +   P        + +    N  +
Sbjct: 68  EILK-------------------------EPIVPKEMVNIPILGKVTAGTPILAVENIED 102

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
           T  +     P N            K    SM+      GD+ I+        G+ ++   
Sbjct: 103 TFPISLNFIPSN------KDLFMLKISGESMIDAGILDGDLAIIEKTNTAKNGEIVVALI 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
              ++  K       + I L   N       +E   +  + +
Sbjct: 157 D-NEVTLKRFFK-EDKHIRLQPENKNMDPIILEDDSVSIVGK 196


>gi|186476388|ref|YP_001857858.1| LexA repressor [Burkholderia phymatum STM815]
 gi|229621203|sp|B2JK89|LEXA_BURP8 RecName: Full=LexA repressor
 gi|184192847|gb|ACC70812.1| transcriptional repressor, LexA family [Burkholderia phymatum
           STM815]
          Length = 216

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 23/214 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G    +                S E
Sbjct: 1   MTKLTARQQQVFDLIRRAIERTGFPPTRAEIAAELGFSSAN----------------SAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                    +        L             G    G+   
Sbjct: 45  EHLRALARKGVIELAAGASRGIRLIAGQDDLPHQFTLPHASIMQLSLPLVGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 105 AQEHISQTYMCDPSLFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKKSEAKDGQIIVAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  R    ++L++ N  Y    V+ 
Sbjct: 164 LGDDVTVKRLKRRPDG-LELIAENPDYENIFVQA 196


>gi|218704103|ref|YP_002411622.1| putative transcriptional regulator from phage origin [Escherichia
           coli UMN026]
 gi|218431200|emb|CAR12076.1| putative transcriptional regulator from phage origin [Escherichia
           coli UMN026]
 gi|323976890|gb|EGB71978.1| peptidase S24 [Escherichia coli TW10509]
          Length = 230

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 17/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  N+  + LA   G+D  + ++ +     G+ +  + +++  I  +   
Sbjct: 2   NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGV 57

Query: 68  TICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            I  L                E   +   +             +G+   G+  + +   E
Sbjct: 58  DIADLFTSALKSNTVYKNSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIE 117

Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            R+ +                  +  SM P    GD++ ++ +I    GD + +      
Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           I  K L       + ++S N  Y    +            ++L  SQ
Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222


>gi|53802873|ref|YP_115350.1| prophage MuMc02, S24 family peptidase [Methylococcus capsulatus
           str. Bath]
 gi|53756634|gb|AAU90925.1| prophage MuMc02, peptidase, family S24 [Methylococcus capsulatus
           str. Bath]
          Length = 193

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 18/190 (9%)

Query: 48  GRNRWPSTESIFKILAATNETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDS 106
            R   P  E +  I              P   G    +K  +  P +Y P          
Sbjct: 2   KREYQPPPEVLALIRQKLQGEPQAAHAYPTKPGGLNGDKHLQRQPAVYSPDDYVALPLYD 61

Query: 107 GVFPTGNKW--------NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
                G           + +   +       + +             SM P   KGD+++
Sbjct: 62  VRAAAGGGVVPDTENVVDFLHFKKAWLRTE-LRSSPDDLYLIYVDGESMEPTLCKGDVIL 120

Query: 159 LNSAIQV--NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--- 213
           +N   +     G   +++   G ++ K L  + G  I + S N  Y    V   D++   
Sbjct: 121 VNHRDKFQGRDGGIYVLRLD-GALLVKRLQRKMGGIIKVTSDNPVYEPFEVGAQDLDRAD 179

Query: 214 --WIARILWA 221
              I R++WA
Sbjct: 180 FSIIGRVVWA 189


>gi|329897460|ref|ZP_08272103.1| SOS-response repressor and protease LexA [gamma proteobacterium
           IMCC3088]
 gi|328921157|gb|EGG28560.1| SOS-response repressor and protease LexA [gamma proteobacterium
           IMCC3088]
          Length = 199

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 39/217 (17%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I    +   + P  + +AR  G    +                + E
Sbjct: 1   MIKLTQRQQQVLDFIKGHMQSTGMPPTRADIARSLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                                      G    G    G+   
Sbjct: 45  DHLKALARKGAIEMIPGASRGIKLPEAT----------------FGLPVIGRVAAGSPIL 88

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E        +     D   K +  SM+ +    GD L +     V  G  ++ + 
Sbjct: 89  AEEHIEEHISIPPDFFYPPADYFLKVRGDSMINVGILDGDFLAVKRTSDVRNGQIVVARI 148

Query: 176 RTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSD 211
              ++  K L    G   + L++ N  Y    V++ D
Sbjct: 149 -EDEVTVKRLDKPAGGHTVRLIAENPAYEPIVVDLRD 184


>gi|323352770|ref|ZP_08087740.1| transcriptional repressor [Streptococcus sanguinis VMC66]
 gi|322121806|gb|EFX93552.1| transcriptional repressor [Streptococcus sanguinis VMC66]
          Length = 225

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDKTSALYTYPLLTLPHKKEVDQFASRLLERQRKVSSLTAYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPTIVGIVV 217


>gi|320638697|gb|EFX08362.1| putative transcriptional regulator from phage origin [Escherichia
           coli O157:H7 str. G5101]
          Length = 230

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 17/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  N+  + LA   G+D  + ++ +     G+ +  + +++  I  +   
Sbjct: 2   NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57

Query: 68  T-----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVG 119
                              T E   +   +             +G+   G+  +    + 
Sbjct: 58  DIADLFTSDFKSNTVYKNSTGEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                +                 +  SM P    GD++ ++ +I    GD + +      
Sbjct: 118 YITDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDK 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           I  K L       + ++S N  Y    +            ++L  SQ
Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222


>gi|239504169|ref|ZP_04663479.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii AB900]
          Length = 254

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 76/247 (30%), Gaps = 45/247 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----------- 49
           M +   + + + I  +     LT   LA+ AG+   +    ++     +           
Sbjct: 1   MKNL--ETMGQRIRALRREKKLTQGELAKIAGVSAPNVTGWEKDAYAPKADPLSKMAAYF 58

Query: 50  --------------NRWPSTESIFKILA-------ATNETICQLLDLPFSDGRTTEKKEK 88
                          +  ST +  K+L                 +    +  ++   +++
Sbjct: 59  GVSTSYITNGDESGPKLDSTVTQLKVLDIEAFKKKYNIPDSEDAVKFLETPVKSFPTQKR 118

Query: 89  EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
            +P+  +   G  G+F    +        V            ++   +    K    SM 
Sbjct: 119 YVPVKAYSKMGMDGYFTDMGYEGNAGDGYVPT----------HSAGPRAYGIKGTGDSMF 168

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           P  R G  ++ +    +   + + +  + G    K  +   G  + L+S+N        E
Sbjct: 169 PAIRNGWYVVCDPDADLVPNEFVQVCLKDGRCTIKEFVGINGGVLSLLSVNGG-ERFFFE 227

Query: 209 MSDIEWI 215
           M ++E I
Sbjct: 228 MDEVESI 234


>gi|163867793|ref|YP_001608997.1| hypothetical protein Btr_0553 [Bartonella tribocorum CIP 105476]
 gi|161017444|emb|CAK01002.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476]
          Length = 217

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 73/228 (32%), Gaps = 31/228 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I ++ +   LT   LA KAG       + ++       R  + E   K+        
Sbjct: 1   MHIIKKLRKDLGLTQVKLAEKAGTTQPQIKRLEKGE-----RKLTKEWAEKLAPHLGVKP 55

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LL     +          IP++    + S    +   F     ++ +      S +  
Sbjct: 56  FNLLFPENEEIHPISNAIGMIPVIGKVAASSWMSVEDMDF----GFDDIEYVPSTSKYPA 111

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKP-----RTGDI 180
            +         K +   +  + R GD L    I+ + I V   D ++++      +  + 
Sbjct: 112 HFQ-----FALKIEGNCLNKIARDGDQLICVDIIKAGINVEPNDLVIVERSRFNGQMIER 166

Query: 181 VAKVLISRRGRSIDLMSLN--CCY-PVDTV----EMSDIEWIARILWA 221
            AK +  +     +L   +    +     +    +  +I  + ++LW 
Sbjct: 167 TAKRI-RQTISGFELWPESTEPNHQEPIKINGATDGEEIRVVGKVLWI 213


>gi|324990700|gb|EGC22636.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK353]
 gi|327458798|gb|EGF05146.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK1057]
          Length = 225

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSTLYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|241889648|ref|ZP_04776946.1| XRE family transcriptional regulator [Gemella haemolysans ATCC
           10379]
 gi|241863270|gb|EER67654.1| XRE family transcriptional regulator [Gemella haemolysans ATCC
           10379]
          Length = 218

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/209 (10%), Positives = 62/209 (29%), Gaps = 6/209 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  +  +  ++ + +A+  G+   ++N  ++       +     +++  +  T     
Sbjct: 5   NRLKSLRTKQKVSQTAVAKHLGVTRAAYNSWEKGKYIPNKKNLDELALYFNVETTYFESE 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
             +   +       +K+          S    +        G         +        
Sbjct: 65  YEIVNKYLQLNEINQKKLLTMANELYVSQLYKYQVHAKLSAGLGNFYYE--DYEFDTVYF 122

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGDIVAKVLISRR 189
               + D        SM P Y  GD+ ++        G D  ++     +   K +    
Sbjct: 123 DKDISHDIASWIDGDSMEPKYYSGDVALIKKTGYDFDGLDYAVV--YNEETYIKKVF-LE 179

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             ++ L+S+N  Y      + ++  +  +
Sbjct: 180 ENTVHLVSINDNYKDIIAPIEEVNIVGVV 208


>gi|302189709|ref|ZP_07266382.1| prophage PSPPH03, Cro/CI family transcriptional regulator
           [Pseudomonas syringae pv. syringae 642]
          Length = 290

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 64/261 (24%), Gaps = 56/261 (21%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----------------------- 55
              L+   +A +AG+ P + N   +       R+ +                        
Sbjct: 28  ELKLSQKKIADEAGMTPAAVNLYFKGINPLNTRFAAVLSRMLQEPVESFSPRLAKEIASL 87

Query: 56  -----------------ESIFKILAATNETICQLLDLPFSDGRTTEK----KEKEIPLLY 94
                            + I K          Q +     +   +      K  E     
Sbjct: 88  TSAGKPAASQSSVDIVQQMIAKHGKNLPADARQKIADAVEEVAASVAGANVKGAEYSRPG 147

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIR----------SPHNGIYAIQTQDTRHKTQD 144
                            G        PE+                 +             
Sbjct: 148 VVGDEVWIAHYDVRAAMGGGQIPNEYPEMLQDIRVSPKHLREMGVTFKEHFHLKMITGWG 207

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P  +  D L+++  ++   GD + +      +  K L  +      ++S N  +  
Sbjct: 208 QSMAPTIKDRDPLLVDVTVREFTGDGIYLFSYDEMLYVKRLQKKGKDRFKMISDNKHHDP 267

Query: 205 DTVEMSDIEWIARI--LWASQ 223
           + + + D   +AR+  +W  Q
Sbjct: 268 EDIWVDDTHILARVLYVWNGQ 288


>gi|332361797|gb|EGJ39601.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK1056]
          Length = 225

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRVELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSTLYTYPLLTAPHKKEVDQLASRLLERQRKVSSLTAYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|330889589|gb|EGH22250.1| repressor protein c2 [Pseudomonas syringae pv. mori str. 301020]
          Length = 359

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        +    +A + G+  ++  +          +    E+++ + 
Sbjct: 142 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 193

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121
            AT      L           +        L   P+ S  +        G+    V   P
Sbjct: 194 RATGFRAEWLAIGEG---PEKDAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 250

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 251 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 310

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 311 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 350


>gi|307320170|ref|ZP_07599590.1| putative phage repressor [Sinorhizobium meliloti AK83]
 gi|306894216|gb|EFN24982.1| putative phage repressor [Sinorhizobium meliloti AK83]
          Length = 231

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 63/223 (28%), Gaps = 19/223 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I  AI    +R  L    +A   G+D  +    +     G    PSTE++ +       
Sbjct: 9   QIGTAIRTARKRRGLVQRNIAEHLGIDVAAVGMWE-----GGRNLPSTENLMRAALFLGI 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE----- 122
               L                +  ++  P     G  D  +       +           
Sbjct: 64  NPVAL-ARGELVYINGTDDLADAEIISDPSPPPTGPMDVKLLGVSYGGDDGDFTFNGEVA 122

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP------R 176
                    A             SM+P Y  GDI+          GD ++++       +
Sbjct: 123 GYVRRPPGIASLHNVFALHVLSDSMVPRYDPGDIIYCG-GRDAVPGDHVVVEMFGESEDQ 181

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G    K L  R  + I +   N        +   ++ + R++
Sbjct: 182 PGKSFIKRLKQRTTKQIIVDQYNPA-KEIIFDRYQVKNLWRVI 223


>gi|148548805|ref|YP_001268907.1| LexA repressor [Pseudomonas putida F1]
 gi|148512863|gb|ABQ79723.1| SOS-response transcriptional repressor, LexA [Pseudomonas putida
           F1]
          Length = 202

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E             +   G    G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGLE-----------AKAEETGLPIIGRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AEQHIEQSCNINPAFFHPQADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ +
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKE 187


>gi|322412342|gb|EFY03250.1| Phage transcriptional repressor [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 230

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 24/226 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +       + + S LA    ++  S+NK +        +  S  ++ +IL       
Sbjct: 4   GSRLKECRMEKHYSQSELANLLKINRASYNKWETGKSVPNQKNLS--ALARILDVPTTYF 61

Query: 70  CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115
                +  +  + + +             +K+       P  +           G     
Sbjct: 62  ESEYKIVNTYLQLSTENQGKVDEYADELLQKQQSQEKVIPLFAVEVLSDVSLSAGLGESL 121

Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
            +      + +           D     +  SM P+Y  G++ ++ ++     G  +   
Sbjct: 122 FDEYETETVYAEEEQY----GYDIAAWIKGDSMEPIYLDGEVALIRASGFDYDG-AVYAL 176

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                +  K L         ++SLN  YP   +   D    +  ++
Sbjct: 177 SWNDSVYIKKLYREENG-FRMVSLNDNYPDKWIPYEDNPRIVGLVV 221


>gi|330838800|ref|YP_004413380.1| SOS-response transcriptional repressor, LexA [Selenomonas sputigena
           ATCC 35185]
 gi|329746564|gb|AEB99920.1| SOS-response transcriptional repressor, LexA [Selenomonas sputigena
           ATCC 35185]
          Length = 204

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 53/220 (24%), Gaps = 38/220 (17%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFK 60
            + I+  I     +    PS   +    GL   ++ +       E     R P+      
Sbjct: 11  QQTIFSYIKDFLAKKGYPPSVREIGDAVGLKSSSTVHGYLAKMEESGLIKRDPAKPRAID 70

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                                  P          +    N  +    
Sbjct: 71  ILEDKPWERN-----------------------VSIPLVGVVTAGIPILAEENIEDVFSF 107

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+     +      ++    + +  SM+      GD + +      +  D ++     G 
Sbjct: 108 PQGLIGTH------SKVFVLRVKGRSMINAGIHDGDFVFVKQQETADNNDIVVALVDDGS 161

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +   I L   N           ++  + +++
Sbjct: 162 ATVKRFFKEKD-CIRLQPENDEMEPFY--EKNVRILGKVI 198


>gi|330964902|gb|EGH65162.1| transcriptional regulator [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 243

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  +  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRSGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y     + G   + +         
Sbjct: 65  GPKHPNESANENTGDDTRMAIQQTRNVLRGDVEIQIYMEIESTHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSGEDIARENIRILGWIFWWS 231


>gi|256762517|ref|ZP_05503097.1| transcriptional repressor LexA [Enterococcus faecalis T3]
 gi|256683768|gb|EEU23463.1| transcriptional repressor LexA [Enterococcus faecalis T3]
          Length = 206

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 56/225 (24%), Gaps = 32/225 (14%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           M   +  +   + + I    E     P+   + +   L  TS        +E +      
Sbjct: 1   MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            +  + +  T E +                 EK        P          +       
Sbjct: 61  PTKPRAIELTPEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEAS 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +   +P                     +  SM+      GD +I+      N GD ++  
Sbjct: 104 DFFPLPPDLRTEENAL------FMLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAM 157

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K         I L   N       ++   +  + +++
Sbjct: 158 TDEDEATCKRFFR-EVDHIRLQPENDTLAPILLDN--VTILGKVV 199


>gi|297588423|ref|ZP_06947066.1| repressor lexA [Finegoldia magna ATCC 53516]
 gi|297573796|gb|EFH92517.1| repressor lexA [Finegoldia magna ATCC 53516]
          Length = 208

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 31/220 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              +I + I R  +     P+   +     ++ TS   N   +  ++G  R    ++   
Sbjct: 8   KQIEILKFIKRYIDYKGYPPAIREIGDSLNINSTSTVHNNILKLEMKGYLRRDPLKNRAL 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +  +     +      +       K +    +                   N  +T  +
Sbjct: 68  EIIDSVYEEQENEIKKETIDVPIVGKVQAGMPI---------------LAIENVEDTFPL 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P         Y  Q      K Q  SM       GD +I+      N GD ++       
Sbjct: 113 PIE-------YTSQGVVFILKVQGESMIEDGILNGDKIIVRKQNTANNGDIVVALMD-ES 164

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I+L   N       V+  D+E + +++
Sbjct: 165 ATVKRFYRHSD-HIELRPSNSTMYPIIVK--DVEILGKVI 201


>gi|38234011|ref|NP_939778.1| LexA repressor [Corynebacterium diphtheriae NCTC 13129]
 gi|47605795|sp|P61607|LEXA_CORDI RecName: Full=LexA repressor
 gi|38200273|emb|CAE49957.1| transcriptional repressor [Corynebacterium diphtheriae]
          Length = 237

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 19/222 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF- 59
            ++I E I          PS   +   AGL  TS    +   +E +    R P+      
Sbjct: 21  QRRILEVITDAVSLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGYLRRDPNKPRAVD 80

Query: 60  -KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + L     +       P            E     F P        + +    N     
Sbjct: 81  VRALPDPIPSKPGRKPGPKKSSVAISPDPAETSPTSFVPIVGSIAAGNPILAEENVDGYF 140

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             P                   + +  SM        D +++ S      G+ +      
Sbjct: 141 PFPSEIVG-------DGDLFMLQVEGESMRDAGILHHDWVVVRSQPVAEQGEFVAALI-E 192

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   K   S     + L+  N  +          E + +++
Sbjct: 193 GEATVKEFHSDSSG-VWLLPHNDAFDPI--PAEHAEIMGKVV 231


>gi|332283989|ref|YP_004415900.1| LexA repressor [Pusillimonas sp. T7-7]
 gi|330427942|gb|AEC19276.1| LexA repressor [Pusillimonas sp. T7-7]
          Length = 220

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I E I     R    P  + +AR  G        +    ++   R  + E       
Sbjct: 9   QQQILELIRSEINRTGFPPTRAEIARALGFKSA---NAAEDHLKALARKGAIELTAGASR 65

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               T    +  P               L+             G    G+        E 
Sbjct: 66  GIRLTDVSQVAAPSPTLIEQASSALSQLLVPLV----------GRVAAGHPILAAEHVER 115

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     QT D   + +  SM       GD+L +  +     G  ++ +    ++  
Sbjct: 116 EIGIEPALFSQTPDYLLRVRGLSMRDAGILDGDLLAVKKSPDARNGQIVVARI-GDEVTV 174

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIA 216
           K      G+ I+L+  N  +    V  SD   IE IA
Sbjct: 175 KRFAR-TGKHIELLPENPDFEPIIVTASDEFSIEGIA 210


>gi|239616430|ref|YP_002939752.1| SOS-response transcriptional repressor, LexA [Kosmotoga olearia TBF
           19.5.1]
 gi|239505261|gb|ACR78748.1| SOS-response transcriptional repressor, LexA [Kosmotoga olearia TBF
           19.5.1]
          Length = 208

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 56/215 (26%), Gaps = 21/215 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            ++I E I++  + +   PS                 R       R  + + +  +    
Sbjct: 7   QREILEYIEKFIKLNGYPPS------------IRDICRDFNISSPRG-AAKHLEALEKKG 53

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 +          +         +   P          +    N+  ++ VP    
Sbjct: 54  YIERTGVSRGIRVIRDASGGSVTLENDVVMLPVVGVIAAGEAIRAIENRDESIPVPMWMV 113

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                Y         K    SM       GD +++      N GD ++      +   K 
Sbjct: 114 RRGFEY------YVLKVTGNSMIESHILNGDYVVIRKQEWANNGDIVVALIDGENATLKR 167

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G  + L+  N       +E   ++   +++
Sbjct: 168 F-EHEGPKVRLVPSNPEMLPIVLEADRVKIQGKLV 201


>gi|300855281|ref|YP_003780265.1| LexA repressor [Clostridium ljungdahlii DSM 13528]
 gi|300435396|gb|ADK15163.1| LexA repressor [Clostridium ljungdahlii DSM 13528]
          Length = 205

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 53/215 (24%), Gaps = 29/215 (13%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +I+E I          PS   +    GL  TS   S              E + K     
Sbjct: 11  QIYEFIKTQIREKGYPPSVREICAGVGLKSTSTVHSH------------LEKLEKK---- 54

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                        +       +     L   P          +    N  +   +P    
Sbjct: 55  GFIKRDSSKSRTIEIINRSVPKTTKKELIDIPIVGTITAGMPILAVENIEDVFPLPIEYV 114

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
            +        Q    K Q  SM+      GD+ I+        GD +       +   K 
Sbjct: 115 KNKN------QLFILKVQGESMIDAGILDGDMSIIEQTNFAENGDIVAALID-NEATLKR 167

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   I L   N       V   D + I +++
Sbjct: 168 FFKEKD-HIRLQPENESMSPIIV--DDCKIIGKLV 199


>gi|327480337|gb|AEA83647.1| LexA repressor [Pseudomonas stutzeri DSM 4166]
          Length = 202

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 36/223 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MIKLTPRQTEILAFIKRCLEDNGYPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E    E            G    G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPDFEPAPAET-----------GLPIIGRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AQQHVEESCQISPAFFHPRADYLLRVHGMSMKDIGIYDGDLLAVHTTREARNGQIVVAR- 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216
              ++  K      G+ + L++ N  +    V++   ++    
Sbjct: 153 VGDEVTVKRFKRD-GKKVWLLAENPEFAPIEVDLEHQELVIEG 194


>gi|284008094|emb|CBA74288.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 233

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 23/226 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + +  +    +   LA+  G+  +S  +    G  G         I K+L    E + 
Sbjct: 5   ERLKQAMQEKGFSQGALAKAVGMAQSSVWRLTSGGALGTK---KLIKIAKVLDVNPEWLS 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--FDSGVFPTGNKWNTVGVPEIRSPHN 128
             +    + G  +  +     + ++           +       N+   V  P +R   +
Sbjct: 62  DGIGTMKAHGIKSNNQLIIDSVSHYTDKSKTDEKDNNVVKLKLYNRIEWVLSPSVRGEKD 121

Query: 129 GI--YAIQTQDT-----------RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
               + I                     D SM P+ ++   + L+++I+     ++ +  
Sbjct: 122 TYSMFLIPKNIVEETRSSIKDSISIIAPDDSMSPIIQENSTVALDTSIKDIKNGKIYLVS 181

Query: 176 RTGDIVAKVLISRRGRSIDL---MSLNCCYPVDTVEMSDIEWIARI 218
             G  + + L S     I L    S    YP   V  S++  I ++
Sbjct: 182 YGGVFMIRGLYSLPENKIKLKNYKSD--DYPELIVSASELLIIGKV 225


>gi|28378694|ref|NP_785586.1| LexA repressor [Lactobacillus plantarum WCFS1]
 gi|254556892|ref|YP_003063309.1| LexA repressor [Lactobacillus plantarum JDM1]
 gi|300768207|ref|ZP_07078112.1| repressor lexA [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180834|ref|YP_003924962.1| LexA repressor [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|38258039|sp|Q88VI6|LEXA_LACPL RecName: Full=LexA repressor
 gi|28271531|emb|CAD64435.1| transcription repressor of the SOS regulon [Lactobacillus plantarum
           WCFS1]
 gi|254045819|gb|ACT62612.1| LexA repressor [Lactobacillus plantarum JDM1]
 gi|300494271|gb|EFK29434.1| repressor lexA [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046325|gb|ADN98868.1| LexA repressor [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 210

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 55/230 (23%), Gaps = 40/230 (17%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50
           M+  S  K   +   I          P+   +     L  TS      ++ ++ G   + 
Sbjct: 1   MSKTSESKQMAVLRFIYERVNEKGYPPTVREIGEAVDLSSTSTVHGHISRLEKKGYIQK- 59

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             P+     ++                       +        +  P          +  
Sbjct: 60  -DPTKPRAIEV------------------TPAGFEALGVETTPHQIPVLGTVTAGQPILA 100

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
                +   +P+                    +  SM+ +    GD +I+      + GD
Sbjct: 101 VQEATDYFPIPKELESFG------GDLFMLTIRGESMINIGIMNGDQVIVRRQSSADNGD 154

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K           L   N       +    +  + +++
Sbjct: 155 IIIAMTDENEATCKRFFK-EADHYRLQPENDTMAPIILNN--VSVLGKVV 201


>gi|28871274|ref|NP_793893.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213970892|ref|ZP_03399015.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1]
 gi|301383758|ref|ZP_07232176.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059454|ref|ZP_07250995.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato
           K40]
 gi|302133667|ref|ZP_07259657.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28854524|gb|AAO57588.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213924415|gb|EEB57987.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1]
 gi|330966535|gb|EGH66795.1| repressor protein c2 [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331015699|gb|EGH95755.1| repressor protein c2, putative [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 217

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 22/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H++I +AI     +       +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRHERIAKAIAASGRKKG----EIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121
            AT      L      +    +     I            +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEGPEKEEFDANVAMIDQPKMS----FRYPVISWVSAGSWEEAVQPYP 108

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 109 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGRLVIAKL 168

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +   +  D   I 
Sbjct: 169 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECDA-DCRIIG 208


>gi|320325651|gb|EFW81713.1| repressor protein c2, putative [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 359

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        +    +A + G+  ++  +          +    E+++ + 
Sbjct: 142 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 193

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121
            AT      L           E        L   P+ S  +        G+    V   P
Sbjct: 194 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 250

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 251 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 310

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 311 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 350


>gi|258436121|ref|ZP_05689104.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257848810|gb|EEV72795.1| conserved hypothetical protein [Staphylococcus aureus A9299]
          Length = 242

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++     ++ S L+R+ G+   S +       E +        + K L      + 
Sbjct: 10  DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 67

Query: 71  QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGG---------------FFDSG 107
                        +           ++  +L +                           
Sbjct: 68  GFDISKNRKIENNDITSIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 127

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              TG         +I          +T    D        SM P+ ++G    +     
Sbjct: 128 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 187

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +++
Sbjct: 188 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 241


>gi|237741382|ref|ZP_04571863.1| LexA repressor [Fusobacterium sp. 4_1_13]
 gi|294784141|ref|ZP_06749442.1| LexA repressor [Fusobacterium sp. 3_1_27]
 gi|229430914|gb|EEO41126.1| LexA repressor [Fusobacterium sp. 4_1_13]
 gi|294488211|gb|EFG35556.1| LexA repressor [Fusobacterium sp. 3_1_27]
          Length = 219

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 11/214 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + R+  +H  +  GLA+K  L  T  +K ++         P +++  + + A     
Sbjct: 4   GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVVAVYPEE 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            ++L   +      +  +KE  +     S        G    G  +  +  P+   P   
Sbjct: 58  REILKKEYLKETLPDIFQKEDAIKIVSNSEILNLPVYGKASAGRGYLNMDSPDYYMPILR 117

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +    +    SM P    G+  +++        +++ +     +   K L  + 
Sbjct: 118 GNF-SKRSFFVEITGNSMEPTLEDGEFALVDPDNTAYSKNKIYVVTYNDEGYIKRLEMKD 176

Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
             + I L S N  Y    +        +   R++
Sbjct: 177 KLKIITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210


>gi|224372655|ref|YP_002607027.1| hypothetical protein NAMH_0610 [Nautilia profundicola AmH]
 gi|223589461|gb|ACM93197.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 205

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 66/217 (30%), Gaps = 23/217 (10%)

Query: 7   KKIWEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +KI E I  +         +    +A+  G+ P   +  K+            E +    
Sbjct: 4   EKIIEKIKDILSLEIGERKVLNKDVAKALGITPEHLSMLKKRNKIP------FEELAYFC 57

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A    ++  LL     +   TE ++               +F       G          
Sbjct: 58  AKRKISLNWLLFDQQIENIATETEKFSKIR----------YFKDINASAGGGALNFDENY 107

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                +    I            SM P  + G I+ ++   +      + +      +  
Sbjct: 108 ETLYIDKKI-IDKDLDAINVIGDSMEPTIKDGSIIFIDRNDKSVQNGGIFVVSTPAGVFV 166

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +  R    I+L+S N  YP +TV   D E I +++
Sbjct: 167 KRINLRSDGKIELISDNKLYPGETV--EDAEIIGKVV 201


>gi|191174537|ref|ZP_03036034.1| regulatory protein [Escherichia coli F11]
 gi|300992733|ref|ZP_07180010.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|190905183|gb|EDV64825.1| regulatory protein [Escherichia coli F11]
 gi|300305229|gb|EFJ59749.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|324015072|gb|EGB84291.1| peptidase S24-like domain protein [Escherichia coli MS 60-1]
          Length = 230

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 17/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  N+  + LA   G+D  + ++ +     G+ +  + +++  I  +   
Sbjct: 2   NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGV 57

Query: 68  TICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            I  L                E   +   +             +G+   G+  + +   E
Sbjct: 58  DIADLFTSALKSNTVYKNSNDEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIE 117

Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            R+ +                  +  SM P    GD++ ++ +I    GD + +      
Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           I  K L       + ++S N  Y    +            ++L  SQ
Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222


>gi|320529087|ref|ZP_08030179.1| repressor LexA [Selenomonas artemidis F0399]
 gi|320138717|gb|EFW30607.1| repressor LexA [Selenomonas artemidis F0399]
          Length = 214

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 55/221 (24%), Gaps = 32/221 (14%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           ++    +I + I          PS   +    GL  +S                   ++ 
Sbjct: 17  STRRQSEILQYIKDFLVDKGYPPSVREIGTAVGLKSSS-------------------TVH 57

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + LA   E      D           +      +  P           +    N      
Sbjct: 58  RYLAMLEENGAIRRDATKPRAIDIMGENPWGRTIPIP-LVGTVTAGEPILAEQNVEEIFS 116

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
            P                   + Q  SM+ +    GD +++      N GD ++      
Sbjct: 117 FPRALIGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALIDGE 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K     +   I L   N          +D++ + +++
Sbjct: 171 TATVKRFYREK-TCIRLQPENDSMEPFY--ETDVQIMGKVI 208


>gi|218780516|ref|YP_002431834.1| SOS-response transcriptional repressor, LexA [Desulfatibacillum
           alkenivorans AK-01]
 gi|259494471|sp|B8FIX5|LEXA_DESAA RecName: Full=LexA repressor
 gi|218761900|gb|ACL04366.1| SOS-response transcriptional repressor, LexA [Desulfatibacillum
           alkenivorans AK-01]
          Length = 203

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 60/225 (26%), Gaps = 40/225 (17%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   + K+  ++E I      H   P+   L  + G   P + +   +   +        
Sbjct: 1   MEDLTEKQSLVFEFIMEYTADHGYPPTVRELCDELGFKSPNTAHFHLKGLKDK------- 53

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                                    ++ + K + I +L  PP   G     G    G   
Sbjct: 54  ----------------------GYIQSAKGKNRGITVLKTPPGAGGKIPLVGRIAAGAPI 91

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
             V         +  +   +     + +  SM       GD +++        GD +   
Sbjct: 92  LAVENVMDTLDVDRAFFGSSDAFSVRVEGDSMIEAHIEDGDYVVIKPTATPRNGDIVAAL 151

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIA 216
               ++  K      G  I+L   N  Y           D+  + 
Sbjct: 152 VN-DEVTLKYFHRD-GSRIELRPANVRYKPFCYTEEDFIDVRVLG 194


>gi|308047905|ref|YP_003911471.1| SOS-response transcriptional repressor, LexA [Ferrimonas balearica
           DSM 9799]
 gi|307630095|gb|ADN74397.1| SOS-response transcriptional repressor, LexA [Ferrimonas balearica
           DSM 9799]
          Length = 207

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 33/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++++ + +  +   + P  + +AR+ G                     + E
Sbjct: 1   MKPLTPRQNQVFDLVRQHMQDTGMPPTRAEIARQLGFKSA---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                              L   P     G    G    G    
Sbjct: 46  HLKALAR------------KGFIEIVPGTSRGIRLLYNEPEPEQLGLPLIGRVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +G     + +   + +  SM  +    GD+L ++       G  ++ + 
Sbjct: 94  AQEHVETHYQMDGNLFRPSANYLLRVRGDSMKEIGILDGDLLAVHQTQDARNGQVVVARV 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K    R G  + L + N  Y    V++ D
Sbjct: 154 GEDEVTVKRFERR-GNVVYLHAENAEYEPIVVDLED 188


>gi|167032691|ref|YP_001667922.1| LexA repressor [Pseudomonas putida GB-1]
 gi|166859179|gb|ABY97586.1| transcriptional repressor, LexA family [Pseudomonas putida GB-1]
          Length = 202

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E K           +   G    G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGLETK-----------AEESGLPIIGRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AEQHIEQSCNINPAFFHPQADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ +
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKE 187


>gi|71903695|ref|YP_280498.1| phage transcriptional repressor [Streptococcus phage 6180.1]
 gi|71802790|gb|AAX72143.1| phage transcriptional repressor [Streptococcus phage 6180.1]
          Length = 247

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 66/245 (26%), Gaps = 41/245 (16%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  +I  + +   +T   LA+  G    + +  +        R      I K   A    
Sbjct: 4   LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGN-----RQLDEVDIRKYAKALKIE 58

Query: 69  ICQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
             QL D   S                     +           +            N  +
Sbjct: 59  PQQLFDYSSSPTNPQVELIPSTLQKINSTSSQLEHSRQIIVLDTAETLLEQQKEIKNNED 118

Query: 117 TVGVPEIRSPHNGIYAIQ-------------------TQDTRHKTQDTSMLPLYRKGDIL 157
           T+      + ++   +                       D        SM P Y  GD +
Sbjct: 119 TIAELFSYNYYDHAASAGTGQYLNDVQVEKIELPVDYDADFVIPVYGDSMEPKYHSGDYV 178

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS-DIEW 214
            +  ++++  GD  +     GD   K L+     +  L SLN    YP   ++   D   
Sbjct: 179 FVKLSVELTDGDIGV-FEYYGDAYIKQLLINAEGAF-LHSLNQCGDYPDIPIDRDSDFRI 236

Query: 215 IARIL 219
           I  ++
Sbjct: 237 IGEVM 241


>gi|225619569|ref|YP_002720826.1| LexA repressor [Brachyspira hyodysenteriae WA1]
 gi|225214388|gb|ACN83122.1| LexA repressor [Brachyspira hyodysenteriae WA1]
          Length = 208

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 30/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT  +   + I+  + +    +              P +  +             +T   
Sbjct: 1   MTELTDKQRDIFNFLQKFTNENGY------------PPTVKEIMVHFNFASPTAVTTHLT 48

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                   +   +          + +     I +         G              T 
Sbjct: 49  ALEKKGYVKKTGKRARGSVPIDSSGKGNHNMIKIPLLANEVKAGLLMD--VADETVEETY 106

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P+         A    +   K    SM+    ++GD+++++ + + + GD ++ K   
Sbjct: 107 SLPKSI-------AQDENNFLMKVIGDSMINAHIKEGDMVLVHPSNEADNGDIVVAKIDD 159

Query: 178 G---DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +I  K     +   + L+S N  YP        I  + +++
Sbjct: 160 NGNEEITIKRFFREKD-CVKLVSENNNYPPIE--RESISIVGKVI 201


>gi|206560015|ref|YP_002230779.1| LexA repressor [Burkholderia cenocepacia J2315]
 gi|229621204|sp|B4E8S4|LEXA_BURCJ RecName: Full=LexA repressor
 gi|198036056|emb|CAR51950.1| LexA repressor [Burkholderia cenocepacia J2315]
          Length = 215

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 62/214 (28%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                             L             G    G+   
Sbjct: 54  GVIELAAG----------ASRGIRLLGVDDAPHQFTLPHAALMQLSLPLVGRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L+ R G  ++L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195


>gi|187928268|ref|YP_001898755.1| LexA repressor [Ralstonia pickettii 12J]
 gi|229621742|sp|B2UAG1|LEXA_RALPJ RecName: Full=LexA repressor
 gi|187725158|gb|ACD26323.1| transcriptional repressor, LexA family [Ralstonia pickettii 12J]
          Length = 216

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 23/216 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I +  +R    P  + +A + G    +                + E
Sbjct: 1   MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                 R      +    L             G    G+   
Sbjct: 45  EHLRALARKGVIELTPGASRGIRLRAAGDTAQHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +        D   K +  SM       GD+L +  A +   G  ++ + 
Sbjct: 105 AAEHIDRQYQVDPSLFSAQPDFLLKVRGMSMRDAGILDGDLLAVQRASEATNGKIVVAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K    + GR ++L++ N  +    V++  
Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198


>gi|50914083|ref|YP_060055.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394]
 gi|50903157|gb|AAT86872.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394]
          Length = 281

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 75/248 (30%), Gaps = 36/248 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------------ 48
           M + S     + I    +++ LT   LA+K  + PT+ +  +    +             
Sbjct: 35  MANLS-----DNIKYFRKQNKLTQKELAKKLKIAPTAISAWEVGRNKPLMDNIEQMTSIF 89

Query: 49  --RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP----SGSGG 102
                    + I+KI    +  +        +   +  +  +++ +L             
Sbjct: 90  GIPKSKLLGDEIYKIQETASPELIPSTLQKITATSSQLEHSRQLIVLDTAETLLNQQKEI 149

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ----------DTRHKTQDTSMLPLYR 152
             +         +N    P        +  +Q +          D        SM P Y 
Sbjct: 150 KNNEDTVVELFSYNYYDQPASAGTGQYLNDVQVETIELPVDYDADFVIPVYGDSMGPEYH 209

Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-D 211
             D + +  ++ ++ GD  +     GD   K L+     +  L S N  Y    ++   D
Sbjct: 210 SEDYVFVKLSVDLSDGDIGV-FEYYGDAYIKQLLINAEGAF-LHSFNSKYDDIPIDRDSD 267

Query: 212 IEWIARIL 219
              I  ++
Sbjct: 268 FRIIGEVI 275


>gi|221195127|ref|ZP_03568183.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC
           49626]
 gi|221185030|gb|EEE17421.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC
           49626]
          Length = 217

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 15/217 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I    +R NLT   LA K  +  ++  + +    +     P   +I +I +  N +
Sbjct: 3   LASNIKYYRQRENLTQEELAEKVDVARSTVTQWETGWSQ-----PRMGAIQRIASVLNVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+    S   T+       P               G    G+    V + E  S   
Sbjct: 58  VSDLVADSISMNSTSRPAASITPTPSRVAY----APLLGRVHAGDAQEPVMLEEKISAPY 113

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            +   +      + +   M  +Y +G  ++++  +    G   ++     D V + +   
Sbjct: 114 EVIQHRPHAYFLEVEGMCMGNVYPEGCYVLVDPDVVPQNGSIAVVSIDGADYVMRRMFR- 172

Query: 189 RGRSIDLMSLN--CCYPVDTV---EMSDIEWIARILW 220
              ++ L        +    V   +  ++++   ++W
Sbjct: 173 GANTLVLSPDTYVEGFEDIVVSNPDDHEVKFAGAVVW 209


>gi|220912239|ref|YP_002487548.1| LexA repressor [Arthrobacter chlorophenolicus A6]
 gi|254809086|sp|B8HG97|LEXA_ARTCA RecName: Full=LexA repressor
 gi|219859117|gb|ACL39459.1| SOS-response transcriptional repressor, LexA [Arthrobacter
           chlorophenolicus A6]
          Length = 249

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 58/223 (26%), Gaps = 13/223 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTES 57
            KKI E I R    +   PS   +    GL   S      ++ ++ G   R  + P    
Sbjct: 25  QKKILETIQRSVNVNGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRPRAME 84

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +   L        +                            +      G    G     
Sbjct: 85  VLMPLTLDGGATGRTARQAAEPAAAAAPGITASVTELPTALDTAMVPLVGRIAAGGPILA 144

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176
             V E   P       Q +    K    SM+      GD +++        GD +     
Sbjct: 145 DQVVEDVMPLPRQLVGQGELFMLKVAGDSMVDAAICDGDWVVVRRQADAANGDIVAALLD 204

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K    +R     L+  N  Y     + +    + +++
Sbjct: 205 -DEATVKTF-RQRDGHTWLLPQNTQYEPILGDHA--TIMGKVV 243


>gi|332366115|gb|EGJ43871.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK1059]
          Length = 225

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSALYTYPLLTAPHKKEVDQLASRLLERQRKVSSLTAYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|330877304|gb|EGH11453.1| repressor protein c2 [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 217

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 22/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H++I +AI     +       +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRHERIAKAIAASGRKKG----EIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121
            AT      L      +    +     I            +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEGPEKEAFDANVAMIDQPKMS----FRYPVISWVSAGSWEEAVQPYP 108

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 109 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGRLVIAKL 168

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +   +  D   I 
Sbjct: 169 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECDA-DCRIIG 208


>gi|256846554|ref|ZP_05552011.1| LexA repressor [Fusobacterium sp. 3_1_36A2]
 gi|256718323|gb|EEU31879.1| LexA repressor [Fusobacterium sp. 3_1_36A2]
          Length = 219

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 11/214 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + R+  +H  +  GLA+K  L  T  +K ++         P +++  + + A     
Sbjct: 4   GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVVAVYPEE 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            ++L   +      +  +KE  +     S        G    G  +  +  P+   P   
Sbjct: 58  REILKKEYLKETLPDIFQKEDAIKIVSNSEILNLPVYGKASAGRGYLNMDSPDYYMPILK 117

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +    +    SM P    G+  +++        +++ +     +   K L  + 
Sbjct: 118 GNF-SKRSFFVEITGNSMEPTLEDGEFALVDPDNTAYSKNKIYVVTYNDEGYIKRLEMKD 176

Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
             + I L S N  Y    +        +   R++
Sbjct: 177 KLKIITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210


>gi|219563222|ref|YP_002455814.1| Ci-like repressor [Lactobacillus phage Lv-1]
 gi|215536989|gb|ACJ68926.1| Ci-like repressor [Lactobacillus phage Lv-1]
          Length = 219

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 59/214 (27%), Gaps = 15/214 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +  +  + + T   L+   G   +S +  +    +   R    E I +  +     
Sbjct: 12  LGKNLSYLMGKQHETIPQLSDVTGAAYSSISDWR--TGKKVPRSGYLEKIAQHYSVNISD 69

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +              +         +  P          +    N  + V +        
Sbjct: 70  LLFTDLENGVSTNEFQSISPVAKAEHQIPVIGTIACGEPILAEQNIEDYVSLVP------ 123

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVAKVLI 186
              +        K +  SM P    G I I+     V  G+   +L+     +   K + 
Sbjct: 124 ---SDDATYFGLKCRGHSMEPTIHDGAIAIIRQQPTVEDGEIAAVLVGEDANEATLKRV- 179

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
                +I L+  N  +        D I  + + +
Sbjct: 180 RHVNNAILLVPDNENFEPILGTKKDPIRIVGKAV 213


>gi|148717848|ref|YP_001285320.1| CI-like repressor [Staphylococcus phage 80alpha]
 gi|103058634|gb|ABF71577.1| CI-like repressor [Staphylococcus phage 80alpha]
          Length = 238

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++     ++ S L+R+ G+   S +       E +        + K L      + 
Sbjct: 6   DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 63

Query: 71  QLLDLPFSDGRTTE--------KKEKEIPLLYFPPSGSGG---------------FFDSG 107
                        +           ++  +L +                           
Sbjct: 64  GFDISKNRKIENNDIASIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 123

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              TG         +I          +T    D        SM P+ ++G    +     
Sbjct: 124 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 183

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +++
Sbjct: 184 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 237


>gi|19704910|ref|NP_602405.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296327734|ref|ZP_06870274.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19712805|gb|AAL93704.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296155172|gb|EFG95949.1| LexA repressor [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 219

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 11/214 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + R+  +H  +  GLA+K  L  T  +K ++         P +++  + + A     
Sbjct: 4   GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVVAVYPEE 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            ++L   +      +  +KE  +     S        G    G  +  +  P+   P   
Sbjct: 58  SEVLKKEYLKETLPDIFQKEEAIKIVSNSEVLNLPVYGKASAGRGYLNMDTPDYYMPILK 117

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +    +    SM P    G+  +++        +++ +     +   K L  + 
Sbjct: 118 GNF-SKRSFFVEITGNSMEPTLEDGEFALVDPDNTSYSKNKIYVVTYNDEGYIKRLEMKD 176

Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
             R I L S N  Y    +        +   R++
Sbjct: 177 KLRVITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210


>gi|94990047|ref|YP_598147.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270]
 gi|94543555|gb|ABF33603.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270]
          Length = 249

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 40/240 (16%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  +    NLT   LA + G   ++ +K ++     +      E I K      + +   
Sbjct: 11  VKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYE--IEEIAKFFGVEPKKMMFG 68

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF----------------------------- 103
            +    + +          +                                        
Sbjct: 69  DNPTSINPQVELIPSTLQKINSTSSQLEHSRQIIVLDTAETLLEQQKEIKNNEDTIAELF 128

Query: 104 ---FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
              +       G       V   +      Y     D        SM P Y  GD + + 
Sbjct: 129 SYNYYDHAASAGTGQYLNDVQVEKIELPVDY---DADFVIPVYGDSMEPKYYSGDYVFIK 185

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            ++++  GD  +     GD   K L+     +  L SLN  Y    V+   D   I  ++
Sbjct: 186 LSVELADGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNGKYEDIPVDRDSDFRIIGEVV 243


>gi|25453090|sp|Q8NP86|LEXA_CORGL RecName: Full=LexA repressor
 gi|21324700|dbj|BAB99323.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Corynebacterium glutamicum ATCC 13032]
          Length = 232

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 20/223 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57
            ++I E I          PS   +   AGL  TS    +   +E +         P    
Sbjct: 15  QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 74

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +    + +            +      +      F P        S +    N    
Sbjct: 75  VRHLPETESRSSKAATQAKSKAPQAGVHDPELAGQTSFVPVVGKIAAGSPITAEQNIEEY 134

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P                   +    SM       GD +++ S      G+ +     
Sbjct: 135 YPLPAEIVG-------DGDLFMLQVVGESMRDAGILTGDWVVVRSQPVAEQGEFVAAMID 187

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K         I L+  N  +        + E + +++
Sbjct: 188 -GEATVKEFHKDSSG-IWLLPHNDTFAPI--PAENAEIMGKVV 226


>gi|288959078|ref|YP_003449419.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288911386|dbj|BAI72875.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 222

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 13/214 (6%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
             + +   L+   LA  AG      NK +        R  + +   K+          LL
Sbjct: 9   RELRQAAGLSQEKLADLAGTSQPQINKLETGQ-----RKMTVDWAVKLAGPLGIEPAVLL 63

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----GNKWNTVGV---PEIRS 125
            L         +  +         + +     +   P      G     + +   P    
Sbjct: 64  GLDVPAAPAPTRPARPALPPLLRTTPAQQAQAAASMPVRAAARGGGDQEMFLEDGPIDWI 123

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                               SM+P +R   +L +N       G  +++  R   ++ K  
Sbjct: 124 ARPDYLKNARDPYAMYVVGESMMPRFRPAQLLHVNPHKPPAPGAGVVVVKRNKAVLVKEF 183

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + R   S+ L          +V + +++ +  ++
Sbjct: 184 VRRASDSVILREYRPAEREFSVALEELDTLHTVV 217


>gi|296450739|ref|ZP_06892492.1| XRE family transcriptional regulator [Clostridium difficile NAP08]
 gi|296260583|gb|EFH07425.1| XRE family transcriptional regulator [Clostridium difficile NAP08]
          Length = 246

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 30/236 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARK-----AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           I   I    ++  L+   LA         +   + +K +    E       T  + K+L 
Sbjct: 4   IGRIIAENRKKKGLSQPELAELLSQQGIDVTAKAISKWETDAREPGLHVFLT--LCKLLD 61

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV--------------- 108
             +         P+S      ++ K+    Y     + G F+  +               
Sbjct: 62  IEDIYDAYFGKNPYSVMDGLNQEGKDKIKDYAKILKASGLFEPVIANIIPFRKKEIFMDI 121

Query: 109 ----FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                  G        P+         A    D   +    SM P Y  G+I  +     
Sbjct: 122 FGDAVSAGTGNFLTDSPKESYEVGD-LAPDNADFGVRISGDSMEPEYHNGEIAWIQQKDS 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
           +  G+ + I    GD   K L       + L+SLN  Y    ++ SD  +   +++
Sbjct: 181 ICNGE-VGIFYLNGDAYIKKLHDEPDG-LFLISLNKKYKPIAIQESDSFKIFGKVV 234


>gi|120599311|ref|YP_963885.1| putative prophage repressor [Shewanella sp. W3-18-1]
 gi|120559404|gb|ABM25331.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24
           [Shewanella sp. W3-18-1]
          Length = 219

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 50/213 (23%), Gaps = 13/213 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +   +T   LA    + P               R PS   I  IL   N     L
Sbjct: 7   VKSRMKELGITQERLAELEEVTPGGMGHWLNG-----RREPSLSKIASILKRLNLDSLVL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRSPHNGIY 131
                 +             L                                  +    
Sbjct: 62  HSDGMLEYPDEALVNVSNANLSTKYLKKFPVISYVKAGVWSEAVEESPASASDEWYETTE 121

Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186
                    +    SM       + +G +++++       G  ++       +   K L+
Sbjct: 122 RTSEHCFWLRVIGDSMTSPSGVSFPEGTLILVDPDRDRLNGSFVVAKLTDVNEATFKKLV 181

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G+   L  LN  YP   +  +  + I  ++
Sbjct: 182 VDAGQKF-LKPLNNAYPTLPINGN-CKIIGVVV 212


>gi|149195301|ref|ZP_01872389.1| hypothetical protein CMTB2_00374 [Caminibacter mediatlanticus TB-2]
 gi|149134565|gb|EDM23053.1| hypothetical protein CMTB2_00374 [Caminibacter mediatlanticus TB-2]
          Length = 206

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 18/213 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +KI + +        +    +A+   L P + +  KR            E I    A   
Sbjct: 8   EKIKDILSNEITDRKILNKDVAKALNLTPENLSVLKRRNKIP------YEEIAYFCAKRK 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +I  LL     +      ++  I            +F       G              
Sbjct: 62  ISINWLLFDQNEEEIAKNTEKFAIIR----------YFKDINASAGGGAINFDENYETIY 111

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +    I            SM P  + G I+ ++  I ++ G   +       +  K + 
Sbjct: 112 IDKKL-IDKNLDAIHVVGDSMEPTIKDGSIIFIDRNIPLSSGGIYV-ISTNAGVFVKRIN 169

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +    I+L+S N  YP++ V++ +I+ I +++
Sbjct: 170 IKSSGEIELISDNKIYPIEKVKLEEIKVIGKVV 202


>gi|251782374|ref|YP_002996676.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391003|dbj|BAH81462.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127256|gb|ADX24553.1| Phage transcriptional repressor [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 230

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 21/230 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FS  ++  A  R+A++  L+   L +   ++  + +  ++       +    E +  + 
Sbjct: 1   MFSGDQLKTA--RLAKQ--LSQEELGQLLNVNKMTISNWEKGKNTPNQKHF--EQLLSLF 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T +   +   L     +     ++++                    +   ++      
Sbjct: 55  GVTADYFNKDHRLLIPFNQLLPVNKEKVISYSEQLLNQQIPITKLPNKSKKLYSYRVYES 114

Query: 123 IRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           + +     Y                 D        SM P Y  G+++++        G  
Sbjct: 115 LSAGTGYSYFGDGNFDVVFHDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQDSFDYDG-A 173

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           +      G    K +       + L+SLN  Y        +    I +I+
Sbjct: 174 IYAVEWDGQTYIKKVYREEDG-LRLVSLNKKYSDKFAPYDEDPRIIGKII 222


>gi|26988867|ref|NP_744292.1| LexA repressor [Pseudomonas putida KT2440]
 gi|60392608|sp|P0A153|LEXA1_PSEPK RecName: Full=LexA repressor 1
 gi|60392613|sp|P0A154|LEXA_PSEPU RecName: Full=LexA repressor
 gi|24983673|gb|AAN67756.1|AE016406_11 LexA repressor [Pseudomonas putida KT2440]
 gi|3980196|emb|CAA44749.1| LexA repressor [Pseudomonas putida]
 gi|313499738|gb|ADR61104.1| LexA [Pseudomonas putida BIRD-1]
          Length = 202

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E             +   G    G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGLE-----------AKAEEAGLPIIGRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AEQHIEQSCNINPAFFHPQADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ +
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVDLKE 187


>gi|320327066|gb|EFW83080.1| repressor protein c2, putative [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 350

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        +    +A + G+  ++  +          +    E+++ + 
Sbjct: 133 MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 184

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121
            AT      L           E        L   P+ S  +        G+    V   P
Sbjct: 185 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 241

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 242 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 301

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 302 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 341


>gi|309782233|ref|ZP_07676962.1| repressor LexA [Ralstonia sp. 5_7_47FAA]
 gi|308919004|gb|EFP64672.1| repressor LexA [Ralstonia sp. 5_7_47FAA]
          Length = 216

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 66/216 (30%), Gaps = 23/216 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I +  +R    P  + +A + G    +                + E
Sbjct: 1   MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                 R   +  +    L             G    G+   
Sbjct: 45  EHLRALARKGVIELTPGASRGIRLRAAGETAQHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +        D   K +  SM       GD+L +  A +   G  ++ + 
Sbjct: 105 AAEHIDRQYQVDPSLFSAQPDFLLKVRGMSMRDAGILDGDLLAVQRASEATNGKIVVAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K    + GR ++L++ N  +    V++  
Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198


>gi|167746516|ref|ZP_02418643.1| hypothetical protein ANACAC_01226 [Anaerostipes caccae DSM 14662]
 gi|317471331|ref|ZP_07930688.1| LexA repressor [Anaerostipes sp. 3_2_56FAA]
 gi|167653476|gb|EDR97605.1| hypothetical protein ANACAC_01226 [Anaerostipes caccae DSM 14662]
 gi|316901195|gb|EFV23152.1| LexA repressor [Anaerostipes sp. 3_2_56FAA]
          Length = 205

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 62/220 (28%), Gaps = 35/220 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
             ++I E I          P+   +     L  TS   +  +    +G  R   T+    
Sbjct: 9   KQEQILEYIKSQILEKGYPPAVREICAAVSLKSTSSVHSHLESLESKGYIRRDPTKPRA- 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                       +++   D + T ++   IP++    +G        +  T N  +   +
Sbjct: 68  ------------IEIIDDDFQLTRREVVNIPIVGTVTAG------EPIIATENVEDYFPM 109

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                     +           +  SM+ +    GD++I+         D ++       
Sbjct: 110 LPE-------FIGSKNTFILHVKGDSMINIGIYDGDMVIVEETPSAENNDIVVALI-EDS 161

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       V   ++  + +++
Sbjct: 162 ATVKRFFK-EDGHYRLQPENDFMDPIIV--DEVSILGKVI 198


>gi|237803699|ref|ZP_04591284.1| putative phage repressor [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025681|gb|EGI05737.1| putative phage repressor [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 277

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 15/196 (7%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86
           LA KAG + +            + R     +  ++ + +     Q L           K+
Sbjct: 90  LATKAGKNLS-----------EKVRERMLAAAAELESDSTAESDQTLLPASYANLRPRKE 138

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
           E  IP      +   G   +         N V   +I       Y+  +          S
Sbjct: 139 EILIPQYDVRGAMGHGQVPADY--NEAVRNLVVREDILREKGVSYSSPSALAMITGWGQS 196

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           M       D++I++  I    G+ + +     ++  K ++        L+S N  Y   T
Sbjct: 197 MEGTINDKDLVIVDRGINEFIGEGIYLLTWHQELYIKRMMRLNEDHYRLISDNQHYENQT 256

Query: 207 VEMSDIEWIARI--LW 220
             + D+   A++  +W
Sbjct: 257 ARIDDVAIHAKVLFIW 272


>gi|53728788|ref|ZP_00135141.2| COG1974: SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
          Length = 169

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 48/170 (28%), Gaps = 17/170 (10%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           P  + I  I         +L     +      K     PL+    +G         F   
Sbjct: 2   PDLDDIEVIAKVIGIEPAKLAFGDPNVEPVIVKDSYSYPLVSSIQAGVWTESCD--FRDS 59

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
             ++ +                      +    SM P + +GD+++++   Q   GD + 
Sbjct: 60  QGYDYIDSEIDAGE---------DGFFLRVSGMSMEPKFSEGDLVLIDVRKQPRPGDFVA 110

Query: 173 IKPRTGDIVAKVLISR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                G+   K                +L+ LN  +P  +    DI  I 
Sbjct: 111 AVNGNGEATLKRYRELGDLSPSGNPHFELVPLNPDFPTLSSMKQDIRIIG 160


>gi|326803494|ref|YP_004321312.1| repressor LexA [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651188|gb|AEA01371.1| repressor LexA [Aerococcus urinae ACS-120-V-Col10a]
          Length = 203

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 5/124 (4%)

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSMLPL-YRKGD 155
               G    G    G   +     +   P      +   +    + +  SM+      GD
Sbjct: 75  VDQPGIPIIGTVTAGQPIDAYEDVDGYFPTPPSLNSQDGEYFMLQIRGESMIETGILDGD 134

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
            +I+      + GD ++      +   K           L   N       +   D+  +
Sbjct: 135 YVIVRQQSSASNGDIVIAMTDDDEATCKRFFK-ENGHFRLQPENASLEPIIL--DDVTIL 191

Query: 216 ARIL 219
            +++
Sbjct: 192 GKVV 195


>gi|269121509|ref|YP_003309686.1| phage repressor [Sebaldella termitidis ATCC 33386]
 gi|268615387|gb|ACZ09755.1| putative phage repressor [Sebaldella termitidis ATCC 33386]
          Length = 217

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARK-----AGLDPTSFNKSKRFGIEGRNRWPST 55
           M     + +   I  + ER N +   L+ +       + P++  + ++   + +      
Sbjct: 1   MNKL--EALGNKIRELRERKNWSLDRLSEELEKEDIDIVPSTLFRIEKGQRK-KIDTLLL 57

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
             + KIL      +                         +        +  G    GN +
Sbjct: 58  LGLSKILNYNFFQMLDSQIFRS---------------EDYIEVDDQKLYIYGFASAGNGY 102

Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--NCGDRLL 172
            +T     +          +      K    SM P +   DILIL+ +        ++++
Sbjct: 103 LDTTDYEIMEVSLPKNIRHKKGLFGIKVHGESMEPEFYNNDILILDPSCPEWEELNNKVI 162

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
           +     +   K+L         L S N  YP   +  +D I+ I +++
Sbjct: 163 VVDLNNERYVKLLKYYNDGRAYLFSYNEIYPPIQITENDNIKCIGKVV 210


>gi|104782730|ref|YP_609228.1| LexA repressor [Pseudomonas entomophila L48]
 gi|95111717|emb|CAK16441.1| transcriptional repressor for SOS response (signal peptidase of
           LexA family) [Pseudomonas entomophila L48]
          Length = 202

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E                 G    G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGVE-----------AKVEDNGLPIIGRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AEQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQVVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ +
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLIAENPEFAPIEVDLKE 187


>gi|227495846|ref|ZP_03926157.1| repressor lexA [Actinomyces urogenitalis DSM 15434]
 gi|226834603|gb|EEH66986.1| repressor lexA [Actinomyces urogenitalis DSM 15434]
          Length = 269

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 27/223 (12%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESIFK 60
           +++EA+ +    H   PS   +  + GL   S      +K +R G+    R P      +
Sbjct: 57  EVYEAVRQAVLSHGYPPSMREIGSQVGLTSPSSVKHQLDKLERIGLI--RRDPRLPRALE 114

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++             P         + + + +             S +       + + +
Sbjct: 115 VIEPETTPPSTAEPQPQLPVLPGVAEGEAVAVPLV----GRIAAGSPILAEQEVDDVMAL 170

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK---PR 176
           P   +          +    +    SM       GD +++ S    + GD +        
Sbjct: 171 PRRLTG-------DGKLFMLEVHGDSMIEAAICDGDWVVVRSQPDASNGDIVAAMLEDVD 223

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 KVL  R      L+  N  Y        +   + +++
Sbjct: 224 GASATVKVLSRR-DGHQWLLPRNPDYAPI--PGDEATIMGKVV 263


>gi|87201027|ref|YP_498284.1| putative prophage repressor [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136708|gb|ABD27450.1| putative prophage repressor [Novosphingobium aromaticivorans DSM
           12444]
          Length = 227

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 72/225 (32%), Gaps = 31/225 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + +R  LT   LA + G++  +  + +R       R P  E +F++        
Sbjct: 18  LERLAALRKRKGLTQVDLAERMGVEQPTIQRWERGQ-----REPKFEQLFRLAEILGVDA 72

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LL                + +     +G                + +      +    
Sbjct: 73  SALLSKD-----VAVPLGPTLYVKGDVQAGLWRTAIEHPAS-----DWIAF----TGRAD 118

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLI----KPRTGDIVA 182
           + A        +    SM  +Y +G IL   S     + + G R+++         +   
Sbjct: 119 VSADLEHRFGLRVVGDSMDQVYPEGTILECISLFGRAEASPGKRVIVIRTDIHGDSEATV 178

Query: 183 KVLISRRGR-SIDLMSLNCCYPVDTVEMSD---IE-WIARILWAS 222
           K L+ + G   +   S N  +    +   +   +E  IA I+ AS
Sbjct: 179 KELVEQNGELWLVPRSSNPAHMPIKLNSQEPGIVETRIAAIVVAS 223


>gi|86131349|ref|ZP_01049947.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134]
 gi|85817794|gb|EAQ38962.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134]
          Length = 256

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 16/217 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
                + E H+ T +  A K G+  ++    +R   +      S + I ++L        
Sbjct: 11  RRFKEVREDHDFTQAEFAEKLGIKNST-ADIERGRTK-----LSGQVITELLRLFQINPL 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            +           +K +    ++                     +           +   
Sbjct: 65  WIYGYSKQKHLNPDKGDISPKVV-IVDKEDNENMVLVNQKAAAGYPNNIADVEWYQNLPA 123

Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVA 182
           +               + +  SMLP +R  D ++     +++    +++ +      +V 
Sbjct: 124 FDFPIPQYRNATYRGFQVEGDSMLPNFRPEDWVLAKGVESLEYASDNKVYVIVMQDAVVV 183

Query: 183 KVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K L        + L+S N  Y    V +SDI+ I ++
Sbjct: 184 KKLQKLPDSSRVLLISSNEDYAPYEVAVSDIQEIWQV 220


>gi|325527217|gb|EGD04603.1| LexA repressor [Burkholderia sp. TJI49]
          Length = 215

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I  L         T          L             G    G+   
Sbjct: 54  GVIELAAGASRGIRLLGIDDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L+ R G  ++L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195


>gi|147673224|ref|YP_001216598.1| prophage MuSo2, Cro/CI family transcriptional regulator [Vibrio
           cholerae O395]
 gi|147673724|ref|YP_001216739.1| prophage MuSo2, Cro/CI family transcriptional regulator [Vibrio
           cholerae O395]
 gi|262170246|ref|ZP_06037934.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae RC27]
 gi|146315107|gb|ABQ19646.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio
           cholerae O395]
 gi|146315607|gb|ABQ20146.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio
           cholerae O395]
 gi|227012945|gb|ACP09155.1| transcriptional regulator,Cro/CI family [Vibrio cholerae O395]
 gi|227013085|gb|ACP09295.1| transcriptional regulator,Cro/CI family [Vibrio cholerae O395]
 gi|262021415|gb|EEY40128.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae RC27]
          Length = 245

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 14/219 (6%)

Query: 9   IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I    +R+ E    ++    A+K GL              G   +PS + +  I   +N+
Sbjct: 25  IMRFPERLKEAIGDISIRSFAKKCGLSEAVVRNYL-----GGKTFPSLDKLALISEISNK 79

Query: 68  TICQLLDLPFSDGRTTEKKE----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            +  L     +D   +E            +  P          G     N   T  +   
Sbjct: 80  PLEWLCSGATTDYSVSEPSAFYSIPMDEFVMIPGYRIQVSAGHGALNPENMEPTRYLAFR 139

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           R   N     +        +  SM P     D L+++ A        + I     ++  K
Sbjct: 140 RKWLNYRGFNEKDLAIVWAKGDSMEPTIHNNDTLVVHMARNKPQDGHIYIFRNGDELFVK 199

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
              S    +  L+S N  Y    +   +    + + +++
Sbjct: 200 RYQSML-GTWRLISDNPIYDKLDIPKHEQHQFDVVGQVV 237


>gi|331007082|ref|ZP_08330306.1| SOS-response transcriptional repressor [gamma proteobacterium
           IMCC1989]
 gi|330419099|gb|EGG93541.1| SOS-response transcriptional repressor [gamma proteobacterium
           IMCC1989]
          Length = 204

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 61/211 (28%), Gaps = 23/211 (10%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            +   L    + +  G+     ++        +       ++ KIL    + +      P
Sbjct: 1   MKTLGLKGVDITKATGVSSGGVSQWVNGIT--KPNGAKLLALSKILQCQPDWLLYGKGDP 58

Query: 77  FSDGRTTEKK---EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                 +      +  +P++ +  +G          P G+                   +
Sbjct: 59  KEYDTPSVVPISIQNRVPVISWVQAGEWTAIVDHFQP-GDADEWQETTA---------KV 108

Query: 134 QTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLIS 187
            +       Q  SM      P   +G I+I++    V+ G  ++ +   + +   K L+ 
Sbjct: 109 GSNAFALHVQGDSMVNPSGSPSIPEGSIVIVDPDTVVDNGKIVVARLEESSEATLKKLVI 168

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                  L  LN  Y    +  +    +  +
Sbjct: 169 DGPHRY-LKPLNPDYRPIQINGN-CTIVGVV 197


>gi|167836726|ref|ZP_02463609.1| LexA repressor [Burkholderia thailandensis MSMB43]
          Length = 215

 Score = 86.0 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                             L             G    G+   
Sbjct: 54  GVIELAAG----------ASRGIRLLGIDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  R G  I+L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLKRRPGG-IELIAENPDYENIFVKA 195


>gi|324995252|gb|EGC27164.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK678]
          Length = 225

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  -----LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                +  T+      L  P       +   + +       S +     S     G   +
Sbjct: 57  QENYFVDETSTLYTYPLLTPSHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|66047096|ref|YP_236937.1| peptidase [Pseudomonas syringae pv. syringae B728a]
 gi|63257803|gb|AAY38899.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Pseudomonas
           syringae pv. syringae B728a]
 gi|330970986|gb|EGH71052.1| peptidase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 218

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        L    +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRQERIARAIAA----SGLKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121
            AT      L      +             L   P  S  +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEGPEKAPAFD---ANVALIDQPDMSFRYPVISWVSAGSWEEAVQPYP 109

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209


>gi|76808544|ref|YP_333047.1| repressor protein [Burkholderia pseudomallei 1710b]
 gi|76577997|gb|ABA47472.1| repressor protein, putative [Burkholderia pseudomallei 1710b]
          Length = 289

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 67/215 (31%), Gaps = 19/215 (8%)

Query: 14  DRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           DR+ E    TP S   +K   DP       R  +      P  +++  I  A  ++    
Sbjct: 85  DRLRELTGETPLSTTLKKIDADPNWAKPYARGNL------PGMDALVAIADAYGKS---- 134

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                      +       +       +  F     +   +    +     R        
Sbjct: 135 ---VDWLIGREDSTPTLARIHGSDGKQAQEFAYIKRYAARDGDPEITFAFRRRWIKDYLK 191

Query: 133 IQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            + +     + +D  M P +++ D ++++   Q   G+ L        IV +        
Sbjct: 192 AEVSNLAVVRIEDDLMAPTFQRRDNVLVDMGYQHKPGNGLYALRLEDSIVVRRTQKLSSG 251

Query: 192 SIDLMSLNCCYPVDTVEMS----DIEWIARILWAS 222
            + ++  N  YP D +       D E + +++W S
Sbjct: 252 KLRILCENENYPPDEIRPDENEFDFEIVGKVVWFS 286


>gi|57239512|ref|YP_180648.1| hypothetical protein Erum7850 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579494|ref|YP_197706.1| hypothetical protein ERWE_CDS_08300 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617547|ref|YP_196746.1| hypothetical protein ERGA_CDS_08200 [Ehrlichia ruminantium str.
           Gardel]
 gi|57161591|emb|CAH58519.1| hypothetical protein Erum7850 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417159|emb|CAI28272.1| Hypothetical protein ERGA_CDS_08200 [Ehrlichia ruminantium str.
           Gardel]
 gi|58418120|emb|CAI27324.1| Hypothetical protein ERWE_CDS_08300 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 209

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 75/224 (33%), Gaps = 22/224 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + S+  I   +    ++  +    LA +A +  +           G++  P+++ +  
Sbjct: 1   MKT-SNSIIVTRMKHQMDKMGINARELANRAEVGKSFVYDIL----SGKSTNPTSKKLMA 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    N ++  L+                +  L              +  +G+    +  
Sbjct: 56  IAKVLNVSLSYLISDDSYICGQGNTNILPVYNLELENGQ--------ISSSGDVNLYLSS 107

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
               +P+            +  +  SM+P     DI++++ + +      L +   +  I
Sbjct: 108 NINLTPNM------KDLRVYHVKGDSMIPTLMNQDIVLVDISDKSPHPAGLFVIVDSVGI 161

Query: 181 VAKVLISRRGR---SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
             + L   +      + ++S N  Y      + D+E + RI+W 
Sbjct: 162 SIRRLEYLKDSNKIKLHVVSDNKKYSSYECHLEDMEILGRIIWY 205


>gi|257440458|ref|ZP_05616213.1| LexA repressor [Faecalibacterium prausnitzii A2-165]
 gi|257197080|gb|EEU95364.1| LexA repressor [Faecalibacterium prausnitzii A2-165]
          Length = 206

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 29/224 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M+  S + +   +        L+   LA++ G    +S  K ++   +        E   
Sbjct: 1   MSELSRRILQRRL-----ELGLSQEELAQRMGYRSKSSITKLEKGVNDIPQS--KVEEFA 53

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
             L  T   +        +      +   E+  +    S + G   +      N    +G
Sbjct: 54  AALETTPAWLMG--LENTAFVPPGFEPLPEMVRVPLVGSIACGSPIT---AEQNIECYIG 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           VP               D       +SM P    GDI+ +    +V  G+   ++    +
Sbjct: 109 VPAAWHA----------DFALTCHGSSMAPTICDGDIVCIRCQPEVEQGEIAAVRI-GDE 157

Query: 180 IVAKVLISRRGRSIDLMSLNCCY-PVDTV---EMSDIEWIARIL 219
              K    + G ++ L++ N    P       ++++I+   R +
Sbjct: 158 ATLKHFHRQ-GDTVMLLADNAAVCPPMIYAGPQLNEIQIEGRAV 200


>gi|34497787|ref|NP_902002.1| SOS mutagenesis [Chromobacterium violaceum ATCC 12472]
 gi|34103643|gb|AAQ60004.1| SOS mutagenesis [Chromobacterium violaceum ATCC 12472]
          Length = 198

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 5/181 (2%)

Query: 42  KRFGIEGRNRWPSTESIF-KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           KR G   ++ +   +++  ++       + Q LD   S       +  +   L    S  
Sbjct: 12  KRSGAGRKSVFGGDKTVAVRVPEPLKPILQQWLDDYRSWRTANSAQAFDFRTLGAQLSEL 71

Query: 101 GGFFDSGVFPTGNKWNTVGV-PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
                +G  P G+      +       +  + +        K +  SM       GD+L+
Sbjct: 72  SLPLFAGSVPAGSPVPADDLKETDIDLNTHLVSRPGDTFMVKVKGDSMQGAGIHDGDLLL 131

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +  + +   G  ++     G++  K L       + L+  N  Y    V       I  +
Sbjct: 132 VERSREPRSGKVVVAALN-GELTVKRLERGPAG-VRLLPENPAYQPIDVPEDSSFHIWGV 189

Query: 219 L 219
           +
Sbjct: 190 V 190


>gi|330981536|gb|EGH79639.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 218

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        L    +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRQERIARAIAA----SGLKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121
            AT      L      +             L   P  S  +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEGPEQAPAFD---ANVALIDQPKMSFRYPVISWVSAGSWEEAVQPYP 109

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209


>gi|322678754|gb|EFY74810.1| Repressor protein CII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
          Length = 250

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 19/224 (8%)

Query: 6   HKKIWEA-IDRMAERH----NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           +K+I +A ++ + E       +T +  A      P + ++      E  NR    +   K
Sbjct: 28  NKEIRKANLEALYEERKRSTGMTKAQFAELIDTSPAALSQLL---GENPNRNIGDKLARK 84

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I  A   +   L  L   +                 P  S       +            
Sbjct: 85  IENALGLSFGWLDVLHSKENTGNVAFRGMNDTKGSYPVISWISAGQWMEAV----EPYHR 140

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPR 176
             I   ++              +  SM         +G  ++++  ++   G  ++ K  
Sbjct: 141 RSIDRWYDTTVVCSEDSFWLDVKGDSMTSPVGLSIPEGAAILVDPEVEPRNGKLVVAKLD 200

Query: 177 -TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   K L+   GR   L  LN  YP+  +  +    I  ++
Sbjct: 201 GDNEATFKKLVIDAGRRF-LKPLNPQYPMQEINGN-CRIIGVVV 242


>gi|312963267|ref|ZP_07777751.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
           WH6]
 gi|311282533|gb|EFQ61130.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
           WH6]
          Length = 258

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 61/233 (26%), Gaps = 28/233 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRNRWPSTESIFKILAATNET 68
            + +  +    +L+ S  A+  G+ P   N   KR    GR        + +       +
Sbjct: 5   GDRLKALLREVHLSASDFAKNRGVTPQHVNNWFKRGVPMGR--------LNEFAELLCVS 56

Query: 69  ICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              L                  +    L                 P          P   
Sbjct: 57  SRWLRTGEGPKHPPANFLLEGSDTRKGLASTREGRGKYLTGPTCAPEKLDVEIPLHPTFT 116

Query: 125 SPHNGIYAI---------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
           S      ++           +       D SM+ + ++G  L ++          +    
Sbjct: 117 STERIRVSLHTLQTLTVNPDRAVGAYMVDNSMIDIIQQGATLAIDRGRTQIIDGEIYAVE 176

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD-----IEWIARILWAS 222
             G +  K L +R G  + + S N   +P + +          + +  + W S
Sbjct: 177 HDGMLRIKYLYNRPGGGLRMRSHNAGEHPDEYLTHEQRFEQNFQIVGWVFWWS 229


>gi|78066208|ref|YP_368977.1| LexA repressor [Burkholderia sp. 383]
 gi|170702568|ref|ZP_02893443.1| transcriptional repressor, LexA family [Burkholderia ambifaria
           IOP40-10]
 gi|172060567|ref|YP_001808219.1| LexA repressor [Burkholderia ambifaria MC40-6]
 gi|123742597|sp|Q39GT3|LEXA_BURS3 RecName: Full=LexA repressor
 gi|229621199|sp|B1YPM6|LEXA_BURA4 RecName: Full=LexA repressor
 gi|77966953|gb|ABB08333.1| SOS-response transcriptional repressor, LexA [Burkholderia sp. 383]
 gi|170132528|gb|EDT00981.1| transcriptional repressor, LexA family [Burkholderia ambifaria
           IOP40-10]
 gi|171993084|gb|ACB64003.1| transcriptional repressor, LexA family [Burkholderia ambifaria
           MC40-6]
          Length = 215

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I  L         T          L             G    G+   
Sbjct: 54  GVIELAAGASRGIRLLGIDDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L+ R G  ++L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195


>gi|107022673|ref|YP_621000.1| LexA repressor [Burkholderia cenocepacia AU 1054]
 gi|116689622|ref|YP_835245.1| LexA repressor [Burkholderia cenocepacia HI2424]
 gi|170732925|ref|YP_001764872.1| LexA repressor [Burkholderia cenocepacia MC0-3]
 gi|254245497|ref|ZP_04938818.1| SOS-response transcriptional repressor, LexA [Burkholderia
           cenocepacia PC184]
 gi|123245009|sp|Q1BWH8|LEXA_BURCA RecName: Full=LexA repressor
 gi|166224558|sp|A0K775|LEXA_BURCH RecName: Full=LexA repressor
 gi|229621200|sp|B1K0Z6|LEXA_BURCC RecName: Full=LexA repressor
 gi|105892862|gb|ABF76027.1| SOS-response transcriptional repressor, LexA [Burkholderia
           cenocepacia AU 1054]
 gi|116647711|gb|ABK08352.1| SOS-response transcriptional repressor, LexA [Burkholderia
           cenocepacia HI2424]
 gi|124870273|gb|EAY61989.1| SOS-response transcriptional repressor, LexA [Burkholderia
           cenocepacia PC184]
 gi|169816167|gb|ACA90750.1| transcriptional repressor, LexA family [Burkholderia cenocepacia
           MC0-3]
          Length = 215

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I  L         T          L             G    G+   
Sbjct: 54  GVIELAAGASRGIRLLGIDDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L+ R G  ++L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195


>gi|163754238|ref|ZP_02161361.1| transcriptional regulator [Kordia algicida OT-1]
 gi|161326452|gb|EDP97778.1| transcriptional regulator [Kordia algicida OT-1]
          Length = 255

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 57/216 (26%), Gaps = 17/216 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I  +    + +    A   G   +     +    E     P  + +  +      
Sbjct: 3   NIQKNIKHLRSLKSFSQERFAETLGWSRSMVGSYEEGRSE-----PPIDRLIDLSDHFKL 57

Query: 68  T-----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGV 120
                    L     +       +    P+                   G    +     
Sbjct: 58  PIDILVKNDLTQAKDTSFMQVGNQRLLFPITVDEDDNELIEIIPTKASAGYLAGYADPEY 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRT 177
            E        +           +  SMLP+ + G  ++   ++    V  G   ++  + 
Sbjct: 118 IEQLEKIKLPFLPTGTHRAFPIKGDSMLPV-KDGSYIVAKFVDDINDVKDGRTYVVLTKN 176

Query: 178 GDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDI 212
             +V K +     G+ + L S N  Y    V++ D+
Sbjct: 177 DGLVYKRVSKHFTGQGLLLSSDNKAYAPFHVQLEDV 212


>gi|284006697|emb|CBA71956.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 237

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 66/226 (29%), Gaps = 19/226 (8%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              +   I   I    +   LT + +A+  G+   S  K +    + +    +   + K+
Sbjct: 14  YMKTSTSISNRIRDRRKELRLTQNEIAKALGVSRVSVTKWENG--DTKPDGENLHILTKV 71

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           LA   E +    D    D     +            +G       G+ P     +     
Sbjct: 72  LACNIEWLLYGKDSRSEDDTKLYRLSSATFKRIPLLTGEQISKWDGITPFAEISDVTVWS 131

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML-----PLYRKGDILILNS---AIQVNCGD-RLL 172
           E+ S       +         +  SM      P    G  ++++     I    G   ++
Sbjct: 132 EVMSD------VSANTFMMLVKGDSMANPHGSPSIPDGSKVLVDPDYGDIDDLNGKIIVI 185

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
               + +   K L         L+ LN  + +  +E +      R+
Sbjct: 186 QLEDSKEPTIKKLSIDGPNKY-LIPLNPSFKIIELEGN-YTIKGRV 229


>gi|224541898|ref|ZP_03682437.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525132|gb|EEF94237.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM
           15897]
          Length = 212

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 19/211 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + ++ E+  +    L    G+   + +  +    E     P    + ++      + 
Sbjct: 6   GTNVKQLREKRGIDQKELGEIVGVSDKTVSSWEINRTE-----PKMGIVQQLADYFGVST 60

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L+     D            +  +          +G F   N  + + VP      + 
Sbjct: 61  DYLIKGNHDDAIYENVNIDYTRVPLY----DSICCGNGGFVDDNIIDMIPVPSKGLSKSA 116

Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            Y              SM       GD+LI     +V+ G        T     K     
Sbjct: 117 KY------FAQYASGESMKDAGISDGDLLIFEKVNKVDDGVIGCFCTDTNTATCKKYKEL 170

Query: 189 RGRSIDLMSLNCCYPVDTVEM--SDIEWIAR 217
               I L  +N  Y    V+   S+I  + +
Sbjct: 171 -NGIIMLQPMNADYDPIVVDPLNSNIRCLGK 200


>gi|217980293|ref|YP_002364269.1| putative phage repressor [Shewanella baltica OS223]
 gi|217500930|gb|ACK48902.1| putative phage repressor [Shewanella baltica OS223]
          Length = 209

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 22/220 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +    +   LT   +A   G+   + ++ +    +     P  E +  +      
Sbjct: 2   KLGDRLKNTRKIKGLTQLQIAEGVGVSKVAVSRWELGYSQ-----PKGEKLNALCNLLEI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               LL     + +          +     SGS                 + +P      
Sbjct: 57  DSNWLLTGLKDECKNVAMIPFYSSVSIAAGSGSINEVT--------VEEKIAIP---LWV 105

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                 +      +    SMLP+   G I+ LN   +      + +  +   +  K+LI 
Sbjct: 106 YNKQLNKKDVCCVRVSGKSMLPVLNDGSIIALNPHQKSIKDGMMYVIRQNDLLRVKILIE 165

Query: 188 RRGRSIDLMSLNCCY-----PVDTVEMSDIEWIARILWAS 222
           +   SI + S N  +       + +E+SD E I ++ W S
Sbjct: 166 KP-SSIVIRSYNPDFEGEELSKEELELSDFEIIGQVFWYS 204


>gi|115351549|ref|YP_773388.1| LexA repressor [Burkholderia ambifaria AMMD]
 gi|171319115|ref|ZP_02908237.1| transcriptional repressor, LexA family [Burkholderia ambifaria
           MEX-5]
 gi|122323295|sp|Q0BFL9|LEXA_BURCM RecName: Full=LexA repressor
 gi|115281537|gb|ABI87054.1| SOS-response transcriptional repressor, LexA [Burkholderia
           ambifaria AMMD]
 gi|171095673|gb|EDT40631.1| transcriptional repressor, LexA family [Burkholderia ambifaria
           MEX-5]
          Length = 215

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A  +  I  L         T          L             G    G+   
Sbjct: 54  GVIELAAGASRGIRLLGIEDAPHQFTLPHAGLMQLSLPLV----------GRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L+ R G  ++L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLMRRPGG-LELIAENPDYENIFVKA 195


>gi|320161296|ref|YP_004174520.1| putative LexA repressor [Anaerolinea thermophila UNI-1]
 gi|319995149|dbj|BAJ63920.1| putative LexA repressor [Anaerolinea thermophila UNI-1]
          Length = 241

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 13/224 (5%)

Query: 7   KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKS---KRFGIEGRNRWPSTESIFKI 61
           KKI + + +  E+H   PS   +     +D TS       +        R        ++
Sbjct: 15  KKILDFLIKYQEKHGYPPSIREIGNHINVDSTSLVDYYLNQLQEAGFIERGGRISRSIRV 74

Query: 62  LAAT--NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           L          Q L+   +       +   IP++    +           P  +  +TV 
Sbjct: 75  LRTLDGQVPFMQTLNTVKTAMERATHELLSIPVIGRIGASYPIPMPESDVPYFDSMSTVE 134

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY-RKGDILILNSAIQVNCGDRL-LIKPRT 177
           V +   P   +    +     + +  SM+      GDI+IL  A   N GD + +   R 
Sbjct: 135 VAQSLLPKEKL----SDLFALEVEGDSMIDAMVNDGDIVILKRAEVANNGDMVAVWLTRD 190

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
            +   K   + R   + L   N           +++   +++  
Sbjct: 191 NETTLKYYYNERNGFVRLQPANRTMQPIIRPEKEVQVRGKVVLV 234


>gi|238765583|ref|ZP_04626492.1| hypothetical protein ykris0001_46340 [Yersinia kristensenii ATCC
           33638]
 gi|238696200|gb|EEP89008.1| hypothetical protein ykris0001_46340 [Yersinia kristensenii ATCC
           33638]
          Length = 231

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 70/231 (30%), Gaps = 22/231 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E I  + ++  L    LA K    P + +   +          S E+  +I      
Sbjct: 3   RISERIKYLLKQEGLKQKDLAEKLHASPQTIHNWIKRDA------ISREAANQISETFGY 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG---------SGGFFDSGVFPTGNK---- 114
           ++  LL       +          L   P               FF S     G+     
Sbjct: 57  SLDWLLKGDGEPKKKKTSDLHPEKLPISPWDSSTPLDDDEVEIPFFKSIELAAGHGCCMS 116

Query: 115 --WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
             +N   +   +S      A             SM P+   G  + ++   ++     + 
Sbjct: 117 EDYNGFKLRFSKSTIRRAGACAENVVAFSVHGGSMDPVIPNGATVTVDMGNKIIKDGAIY 176

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
              +      K+L    G  + + S N   YP +  ++  ++ I R++  S
Sbjct: 177 AIEQDELYRLKLLYRLPGHRLSIRSYNRDEYPDEEADLKSVKIIGRVIHWS 227


>gi|88606714|ref|YP_505648.1| DNA-binding protein [Anaplasma phagocytophilum HZ]
 gi|88597777|gb|ABD43247.1| DNA-binding protein [Anaplasma phagocytophilum HZ]
          Length = 212

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 22/216 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I    ++  +    LA KA +  +           G++  P+++ +  I       
Sbjct: 11  VASRIRSQMDKIGVNARELAEKASVGKSFVYDIL----SGKSSNPTSKKLMAIAEVLQVP 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+                I  L          ++    P       +          
Sbjct: 67  LAYLVGSDDGLCEVASGGISPISYLEDEGVDGSIKYEKFYVPANT---KLPFHTEHLRFY 123

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                         +  SM P     DI++++ + +V     +     +  I+ + L   
Sbjct: 124 D------------VKGDSMSPTLFGQDIVLVDISDKVAHPAGVFAIKDSIGILIRRLEYI 171

Query: 189 RG-RSIDL--MSLNCCYPVDTVEMSDIEWIARILWA 221
           R    I L  +  N  Y      + DIE + R++W 
Sbjct: 172 RDSSKIVLHVVCDNKKYSSYECAVEDIEILGRVIWY 207


>gi|189346772|ref|YP_001943301.1| XRE family transcriptional regulator [Chlorobium limicola DSM 245]
 gi|189340919|gb|ACD90322.1| transcriptional regulator, XRE family [Chlorobium limicola DSM 245]
          Length = 242

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 32/236 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI---------------------- 46
           + + +  + +   L       K G+     ++ +                          
Sbjct: 7   LGQRVKALRDHFALRQDEFGIKIGISGNRVSEIENDKGGTTASVLMSLCREFPVNPEWML 66

Query: 47  EGRNRWPSTESIFKILA-ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
            GR +    E+   +        +  L            +++    L   P   +     
Sbjct: 67  SGRGKMLKGEAETSLPEVDFGIRLNLLERQMRHVLHGGAERDTGEQLARVPLYIAAVPAG 126

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
           +     G     + +P            +      K    SM+ +    GD L++ +  +
Sbjct: 127 TPDIAGGEVEEYLDMPSSWIRG------KKNIYALKVNGDSMIDIGIMHGDTLLVEATEK 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
              G  ++I    G++  K L    G ++ L+  N  Y    +    D   +  +L
Sbjct: 181 AKHGQ-VVIASINGEVTVKTLSISVGGAVSLVPENPIYHPIAITPDMDFRILGTVL 235


>gi|148654603|ref|YP_001274808.1| SOS-response transcriptional repressor LexA [Roseiflexus sp. RS-1]
 gi|148566713|gb|ABQ88858.1| SOS-response transcriptional repressor, LexA [Roseiflexus sp. RS-1]
          Length = 243

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 21/218 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I+   + H   PS   +     +  TS        +E +           ++ 
Sbjct: 36  QRDILGFIEEFTQEHGYPPSIREIQDGLRISSTSVVAYNLRALESKG----------LID 85

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   +     +    +  +   +PLL    +G           T      + VP  
Sbjct: 86  RDGRVSRGIKIKNMTPMPLSRAQGGRVPLLGVITAGQPLPNPEDTSTT--AVEMIEVPVD 143

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDIV 181
            +P   +          K +  SM+      GDI+++      + G  + +       + 
Sbjct: 144 LAPPEKL----QNVYALKVRGHSMIDALIDDGDIVLMRYQETADNGQMVAVRIEDDNAVT 199

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K      G  + L   N       V+ + +    R++
Sbjct: 200 LKRFYR-EGDKVRLQPANVTMEPIYVDAARVHIQGRVV 236


>gi|300704321|ref|YP_003745924.1| transcriptional lexa repressor [Ralstonia solanacearum CFBP2957]
 gi|299071985|emb|CBJ43315.1| transcriptional lexA repressor [Ralstonia solanacearum CFBP2957]
          Length = 216

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 23/216 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I +  +R    P  + +A + G    +                + E
Sbjct: 1   MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                 R T         L             G    G+   
Sbjct: 45  EHLRALARKGVIELTPGASRGIRLRATGDASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +        D   K +  SM       GD+L +  A +   G  ++ + 
Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRANEATNGKIVVAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K    + GR ++L++ N  +    V++  
Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198


>gi|255972572|ref|ZP_05423158.1| predicted protein [Enterococcus faecalis T1]
 gi|256762720|ref|ZP_05503300.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|257422398|ref|ZP_05599388.1| predicted protein [Enterococcus faecalis X98]
 gi|255963590|gb|EET96066.1| predicted protein [Enterococcus faecalis T1]
 gi|256683971|gb|EEU23666.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|257164222|gb|EEU94182.1| predicted protein [Enterococcus faecalis X98]
          Length = 253

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 34/243 (13%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +    +  N++   +A + G+  ++  + ++  IE         +I KIL  T E
Sbjct: 13  NVGERMKLRRKELNISADKIANELGVSRSTIFRYEKGDIEKLPTE-RLITIAKILKTTPE 71

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN---------KWNTV 118
            +                 + +          +    +     T N            T+
Sbjct: 72  ELMGWNTSNDFSSIEAIYNKLDTTRKQKVCRYAEHQLEEQKRNTSNNKVIAFMPTNTTTI 131

Query: 119 GVPEIRSPHNGIY-------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
            +    S   G +             A    D   +    SM P ++ G+I+ +   + +
Sbjct: 132 ELSGRLSAGGGAFNDKGCIEIVEVGSAPSQYDLAFQVCGDSMYPTFQDGEIVFVKETMDI 191

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVE-MSDIEWIA 216
             G         G+   K +    G  + L+SLN          YP    + + D+  I 
Sbjct: 192 YNGQIG-AIEINGEAFIKKMY-LEGTRLRLVSLNTELDEDGNRLYPDFYADELDDLYVIG 249

Query: 217 RIL 219
           R++
Sbjct: 250 RVI 252


>gi|148263213|ref|YP_001229919.1| SOS-response transcriptional repressor, LexA [Geobacter
           uraniireducens Rf4]
 gi|189046537|sp|A5GAQ4|LEXA_GEOUR RecName: Full=LexA repressor
 gi|146396713|gb|ABQ25346.1| SOS-response transcriptional repressor, LexA [Geobacter
           uraniireducens Rf4]
          Length = 201

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 57/225 (25%), Gaps = 39/225 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   + +   I    E H   P+   +    G++                    T 
Sbjct: 1   MEKLTPRQQMVLAFISAHLESHGYPPTLREIGGHLGIN-------------------GTL 41

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K L A                  T        ++      +      GV   G    
Sbjct: 42  GVMKHLDALERKGF-----------ITRNAGSSRGIVLVGAVAATSIPIVGVVRAGALQP 90

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            +   E     +            + +  SM     R GD+ ++      + GD ++ + 
Sbjct: 91  AIEDIEGYFAVDRALVKGADCFFLRVKGDSMIEAGIRSGDLALVRPQATADNGDIVVARI 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218
              +   K     +   I L   N       V  +  ++  I ++
Sbjct: 151 N-DEATLKRFFREKD-RIRLQPENSAMEPIIVKAKAGEVNIIGKV 193


>gi|315640888|ref|ZP_07895984.1| transcriptional repressor LexA [Enterococcus italicus DSM 15952]
 gi|315483306|gb|EFU73806.1| transcriptional repressor LexA [Enterococcus italicus DSM 15952]
          Length = 207

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 59/230 (25%), Gaps = 42/230 (18%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50
           M   +  +   +   I +        P+   +     L  TS      ++ ++ G     
Sbjct: 1   MVKRTENRQLEVLRFIHQRVSEKGYPPTVREIGEAVQLSSTSTVHGHLSRLEKKGYI--L 58

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R P+     ++                    T +  E    +    P          +  
Sbjct: 59  RDPTKPRAIEL--------------------TAKGLEAIDIVSDSIPLLGVVTAGEPILA 98

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
                +   +P   +        Q        +  SM+      GD +I+        GD
Sbjct: 99  VEEAADFFPLPPDLTND------QGHLFMLTIKGESMINAGILDGDQVIVRKQDIAQNGD 152

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++      +   K     +     L   N       ++   ++ + R++
Sbjct: 153 IVIAMTDENEATCKTFYKEKN-YYRLQPENDFMDPIILQS--VKILGRVV 199


>gi|313896561|ref|ZP_07830110.1| repressor LexA [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974746|gb|EFR40212.1| repressor LexA [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 204

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 55/221 (24%), Gaps = 32/221 (14%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           ++    +I + I          PS   +    GL  +S                   ++ 
Sbjct: 7   STRRQSEILQYIKDFLVDKGYPPSVREIGTAVGLKSSS-------------------TVH 47

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + LA   E      D           +      +  P           +    N      
Sbjct: 48  RYLAMLEENGAIRRDATKPRAIDIMGENPWGRTIPIP-LVGTVTAGEPILAEQNVEEIFS 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
            P                   + Q  SM+ +    GD +++      N GD ++      
Sbjct: 107 FPRALIGTA------EDVFMLRIQGDSMINVGIFDGDFVLVRQQPTANNGDIVVALIDGE 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K     +   I L   N          +D++ + +++
Sbjct: 161 TATVKRFYREK-TCIRLQPENDSMEPFY--ETDVQIMGKVI 198


>gi|209560013|ref|YP_002286485.1| Repressor protein [Streptococcus phage NZ131.3]
 gi|209541214|gb|ACI61790.1| Repressor protein [Streptococcus phage NZ131.3]
          Length = 252

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 67/255 (26%), Gaps = 50/255 (19%)

Query: 3   SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---------- 51
           S  +KKI    I R  E+ N+ P   ++      ++           R            
Sbjct: 4   SLGNKKIMASNIRRHLEKKNMNPKEFSKAMNFKYSTVLDWVNAKTYPRIDKIELMANYFN 63

Query: 52  ----------WPSTESIFKILAAT--------NETICQLLDLPFSDGRTTEKKEKEIPLL 93
                      P   S  KI                   +    +             ++
Sbjct: 64  VEKSDLVEMYSPKIISATKINNKVALLDKKLKEPRHSDWIKHGENLLSEQNTVGNSKDIV 123

Query: 94  YFPPSGSGGF-FDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
             P +    + +       G           T+ +P               D        
Sbjct: 124 EEPQATYYTYNYYDHAASAGTGQYLNDVQVETIELPVDYDA----------DFVIPVYGD 173

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           SM P Y  GD + +  ++++  GD  +     GD   K L+     +  L SLN  Y   
Sbjct: 174 SMEPEYHSGDYVFIKLSVELADGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNSKYEDI 231

Query: 206 TVEMS-DIEWIARIL 219
            V+   D   I  ++
Sbjct: 232 PVDRDSDFRIIGEVV 246


>gi|319942307|ref|ZP_08016622.1| hypothetical protein HMPREF9464_01841 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804180|gb|EFW01080.1| hypothetical protein HMPREF9464_01841 [Sutterella wadsworthensis
           3_1_45B]
          Length = 232

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 21/216 (9%)

Query: 18  ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
           +    T + LAR  G+  ++ N+  + G           ++ K+      +   L     
Sbjct: 18  KSTGKTQAALARYCGVSTSAVNQWTKSGK------IFDSNLRKVAEFFGVSQRWLQTGEG 71

Query: 78  SDGRTTEKKEKEIPLLY-FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA---- 132
                         +   F          S    +   W  +   E        +     
Sbjct: 72  EKTAQVLSYGVGDKIPDGFVAIPEYRLEFSAGSGSEPTWELIHDSEDCWYRESFFQKRHL 131

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG------DRLLIKPRTGDIVAKVLI 186
           + +Q  R K    SM P  + GD ++  S  +   G        + +    G+   K L 
Sbjct: 132 LPSQCKRAKVCGNSMEPELQNGDTILFESFTETRPGCVHISDGGIYVLTIDGEYRIKYLS 191

Query: 187 SRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
             +   + + S N  Y  +     E   ++ + R+L
Sbjct: 192 KIKNG-LLVSSENSAYRPEEYVGDECDRLKILGRVL 226


>gi|296110377|ref|YP_003620758.1| transcription repressor of the SOS regulon [Leuconostoc kimchii
           IMSNU 11154]
 gi|295831908|gb|ADG39789.1| transcription repressor of the SOS regulon [Leuconostoc kimchii
           IMSNU 11154]
          Length = 213

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 57/220 (25%), Gaps = 28/220 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              ++   I      +   P+   +    GL  +S      +R   +G     +++   +
Sbjct: 9   KQLQVLRFIHEAQITNGYPPTVREVGEAVGLSSSSTIHGHIERLVKKGYLLKDASKPRAR 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +  T             +          IP+L    +G+                   +
Sbjct: 69  AIEVT---------DSGLEALGVSTTPGRIPVLGLVTAGTPILAVE-----EEATEFFPI 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+                    +  SM+ +    GD +I+      + GD ++      +
Sbjct: 115 PDNLMQF------DGDMFMLNVRGNSMVNIGILDGDKVIVRKQDNADNGDVVVAMNDDNE 168

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       +    +  + +++
Sbjct: 169 ATVKRFFR-EADHFRLQPENDAMSPIILR--RVSILGKVI 205


>gi|326575959|gb|EGE25882.1| peptidase S24-like protein [Moraxella catarrhalis CO72]
          Length = 233

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 69/229 (30%), Gaps = 16/229 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++ + +    +   LT   +  +  GL  +++++ +    +   R      +F +     
Sbjct: 2   ELKDRLKYARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAIELAHLFGV-DVHW 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WNTVG 119
               +      +       +  +   L    +    F+    F  G           T  
Sbjct: 61  LISGEGEMTKNNYKLAPITEWDDSTPLDDDEA-EIPFYKDIAFACGYGAVNDDVTHETRK 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +   +   + +  +         +D SM+P  + GD + ++   +     R+        
Sbjct: 120 LRMGKRTLSNLGVMPENAFAVTARDDSMMPYVQDGDTIYIDKGRKEVKDGRIFAIRFGEL 179

Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
            + K L       + ++S N   +P        +   + E +  +   S
Sbjct: 180 CLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVLGWVWSVS 228


>gi|323340828|ref|ZP_08081080.1| transcriptional repressor LexA [Lactobacillus ruminis ATCC 25644]
 gi|323091951|gb|EFZ34571.1| transcriptional repressor LexA [Lactobacillus ruminis ATCC 25644]
          Length = 209

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 46/217 (21%), Gaps = 28/217 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             K+   I    +     P+   + +   L  TS                    + ++  
Sbjct: 10  QIKVLRYIYDTVQEKGYPPTVREICKAVELSSTSTVH---------------GHLARLAK 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                +   E P     P        + +           +P  
Sbjct: 55  RGYLKKDPTKPRAMEITPEGLEAIGETPKKTKIPVIGTVTAGAPILAVEETTEYFPLPPE 114

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                  +           +  SM+       D +I+      + GD ++      +   
Sbjct: 115 -------FESADDLFMLTIRGESMINAGILNSDQVIVRKQNYADNGDIVIAMTEDNEATC 167

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K           L   N       +    +  + +++
Sbjct: 168 KRFFKESD-HYRLQPENDTMAPIILNS--VSIVGKVI 201


>gi|253701101|ref|YP_003022290.1| SOS-response transcriptional repressor, LexA [Geobacter sp. M21]
 gi|259494475|sp|C6DZY8|LEXA_GEOSM RecName: Full=LexA repressor
 gi|251775951|gb|ACT18532.1| SOS-response transcriptional repressor, LexA [Geobacter sp. M21]
          Length = 201

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 39/226 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ + I R  E     P+   +A K G+                     T 
Sbjct: 1   MEQLTARQTEVLQIITRHLETCGYPPTLREIAAKLGIS-------------------GTL 41

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K L A  +          + G T   + +   L         G     +        
Sbjct: 42  GVMKHLEALEKKGYLRRQEGSTRGITLCNQNQATSLP-IVGVVRAGLLHPAIQDI----- 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +            + +  SM+     +GD+ ++      +  D ++   
Sbjct: 96  -----EGHFAIDRSQLASGGAFFLRVKGDSMIHAHIVEGDLALVRPQPDASNRDIVV-AM 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE--MSDIEWIARIL 219
             G+   K         I L   N  Y    ++    ++  + +++
Sbjct: 150 VEGEATLKRFYR-EADRIRLQPENPNYEPIIIQKGEQEVSIVGKVV 194


>gi|46579930|ref|YP_010738.1| transcriptional regulator [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449346|gb|AAS95997.1| transcriptional regulator, putative [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 224

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 17/216 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I   +  + E+  +T S + +  G  P + N+       G +  P    + + + A  
Sbjct: 19  DSILAKVKDLVEQ-GMTYSAIGKMLGKSPATVNRWV-TTGVGGDSTPFVNML-QYMEALG 75

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                +++                   Y     +     S +   G+        +    
Sbjct: 76  LKWGDIVENLE---------PAACGYGYVRKVQAKLGAGSSLITNGDLEGMYAFRQDFIN 126

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             G                SM P    G  +++N          +       +++ K LI
Sbjct: 127 EMGG--NPESLVMFDVIGASMEPTIPDGSTVLVNLRDTSIRSGLIYAVRVNDELLVKRLI 184

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS--DIEWIARILW 220
            +    +   S N  +    ++    + E   R+ W
Sbjct: 185 -QEPGRLLCHSDNPTFGDTVIDGENPNFEVFGRVRW 219


>gi|120610369|ref|YP_970047.1| putative phage repressor [Acidovorax citrulli AAC00-1]
 gi|120588833|gb|ABM32273.1| putative phage repressor [Acidovorax citrulli AAC00-1]
          Length = 220

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 9/210 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +        L+   L++  G+  ++ + ++R    G    P       + A    T 
Sbjct: 6   GSRLRAARNHAGLSQVELSKITGIAQSTISTAER-TGNGSADTPVYARACGVDAHWLATG 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              +    +        E       +      G            W     P   +    
Sbjct: 65  EGQMLSQPATPTNATPYETTKVRPVYVVGRGNGGAMPERL-----WTDGDFPVGGTDECA 119

Query: 130 IYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
             A    +    + +  SM+P Y  G+  ++    +    D +L++   G  + K L+SR
Sbjct: 120 DVATNDPRAFLIRVEGPSMVPRYNPGEYALVEPDTEPEIEDDVLVRLVDGQTILKRLLSR 179

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           RG    L S N    V      ++ W+  +
Sbjct: 180 RGG-WRLGSYN-SMDVLFYSFEEVTWVYYV 207


>gi|160880675|ref|YP_001559643.1| LexA family transcriptional regulator [Clostridium phytofermentans
           ISDg]
 gi|160429341|gb|ABX42904.1| transcriptional repressor, LexA family [Clostridium phytofermentans
           ISDg]
          Length = 204

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 53/221 (23%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I + +          P+   +     L  TS   +  +     G   R PS     
Sbjct: 9   KQQEILDYLKAQIISRGYPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPSKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                                            G    G     V 
Sbjct: 69  EIVD---------------------------GEFNLTRRELVNVPIVGTVTAGQPILAVE 101

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             +   P    Y    Q    K +  SM+      GD +++        GD ++      
Sbjct: 102 NIDGYFPIPTEYMPNEQSFMLKVKGDSMINAGIFNGDQILVKKQTTAENGDFVVALID-D 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +  K     +     L   N       V   D++ +  ++
Sbjct: 161 SVTVKTFYKEK-GYYRLQPENDFMEPIIV--EDVQILGIVI 198


>gi|39995152|ref|NP_951103.1| LexA repressor [Geobacter sulfurreducens PCA]
 gi|47605796|sp|P61608|LEXA1_GEOSL RecName: Full=LexA repressor 1
 gi|39981914|gb|AAR33376.1| LexA repressor [Geobacter sulfurreducens PCA]
          Length = 201

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 56/226 (24%), Gaps = 39/226 (17%)

Query: 1   MTSF--SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M       +++   I      +   P+   +A    +                     T 
Sbjct: 1   MQELAPRQQQVLAFITGFIAENGYPPTLREIAAHLKIS-------------------GTL 41

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K L A         +   S G     +      L        G          +   
Sbjct: 42  GVSKHLEALERKGYLRREANSSRGIALVGRTDTALSLPVAGVVRAGLPQP---AVEDIEE 98

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +            ++      + +  SM+     +GD+ ++         D ++   
Sbjct: 99  YFAIDRSM--------VRGGTFFLRVKGDSMINAAIVEGDLALVRPQATAENRDIVVAMV 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEWIARIL 219
             G+   K    +R + I L   N       +     D+  I +++
Sbjct: 151 D-GEATLKRFYRQRDQ-IRLQPENPNMDPIIIRPGEGDVAIIGKVV 194


>gi|171779398|ref|ZP_02920362.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282015|gb|EDT47446.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 228

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 58/222 (26%), Gaps = 20/222 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        L  + LA++ G+   S+   ++   +     P+  ++ K+      +  
Sbjct: 5   EKLKNRRLELGLKQTELAKELGISKQSYFAWEKGTAK-----PTKANLAKLEELLQVSHG 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPP------------SGSGGFFDSGVFPTGNKWNTV 118
              +L  +        + +   L +                   F               
Sbjct: 60  YFSELEIATLYKQLTDQNQEKALTYVQDLLEQQRKVVTMVQEPRFAYKVYERLSAGIGAN 119

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              ++             D        SM P Y  G + ++        G  +       
Sbjct: 120 VYDDMDYDTVYFDKDLAHDFASWIDGDSMEPTYHNGSVALIRETGFDYDG-AVYAVVWNS 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +       + L+S+N  Y       S+    + +I+
Sbjct: 179 QTYIKKVYREENG-LRLVSINKDYDDKFAPYSENPRIVGKIV 219


>gi|160897372|ref|YP_001562954.1| peptidase S24/S26 domain-containing protein [Delftia acidovorans
           SPH-1]
 gi|160362956|gb|ABX34569.1| peptidase S24 and S26 domain protein [Delftia acidovorans SPH-1]
          Length = 215

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 69/216 (31%), Gaps = 12/216 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           WE +    E        LA    +   +  K K  G            +F++        
Sbjct: 6   WERLLPELEARGWKIQQLADAMKISYQAVRKVKEGGSFSSQNNIKAAKLFRL--NPAWLA 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             +           +    ++PL+    +G+         P G+    +  P    PH  
Sbjct: 64  TGVGPREMDGTDEDDDTLGKVPLISSVQAGNWSEIVDNFQP-GDASEWIPCPAKHGPHTF 122

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISR 188
              ++ +       +  + P Y  G+I+ ++       GDR++++         K  +  
Sbjct: 123 ALTVEGESM----SNPGVHPSYEPGNIIFVDPGRSAQPGDRVVVRLEAQDQATFKQYLEE 178

Query: 189 RGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL--WA 221
            GR   L ++N  +    +E++ D      ++  W 
Sbjct: 179 DGRKF-LRAINPDWRPKFIEINGDATICGVVIGKWV 213


>gi|328953857|ref|YP_004371191.1| SOS-response transcriptional repressor, LexA [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454181|gb|AEB10010.1| SOS-response transcriptional repressor, LexA [Desulfobacca
           acetoxidans DSM 11109]
          Length = 202

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 47/231 (20%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDP----TSFNKSKRFGIEGRNRW 52
           M + +   + +   ++   ++    P+   +A   G+ P       +  KR G    +R 
Sbjct: 1   MKTLTSRQQAVLSFVEEFCQQQGYPPTVREVAAHFGIQPRAADDHLSALKRKGY--LHRE 58

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           P       +                          ++   +   P          +  + 
Sbjct: 59  PGRSRGLAL------------------------TGRQAESVVEVPILGQIAAGQPLLASE 94

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
              +T+ +P              +    +    SM PL   GD++++    +V  GD   
Sbjct: 95  QVEDTLPLPRSWVQGE-------EVFLLRVAGDSMAPLILPGDLVMVRVQPRVARGDIAA 147

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARIL 219
           +     +   K +    G  + L   N  +        +    ++ + R++
Sbjct: 148 VLI-YEEATVKRVYEEAGG-LVLRGDNPNFAPLRFSPEEAAELVQILGRVV 196


>gi|257892444|ref|ZP_05672097.1| transcriptional repressor LexA [Enterococcus faecium 1,231,408]
 gi|257828823|gb|EEV55430.1| transcriptional repressor LexA [Enterococcus faecium 1,231,408]
          Length = 139

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 10/128 (7%)

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151
               P          +    +  +   +P   S        +        +  SM+    
Sbjct: 13  PTTIPVLGVVTAGEPILAVEDASDFFPIPPNLSSE------EGSLFMLTIRGDSMINAGI 66

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             GD +I+        GD ++      +   K     +     L   N       +    
Sbjct: 67  LDGDNVIVRKQETAQNGDIVIAMTAEDEATCKRFYKEKN-FFRLQPENDLLEPIIL--DQ 123

Query: 212 IEWIARIL 219
           +  + R++
Sbjct: 124 VSILGRVV 131


>gi|330877543|gb|EGH11692.1| transcriptional regulator [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 243

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 22/231 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  +  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRSGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y       G   + +         
Sbjct: 65  GPKHPNESANENTGDDTRMAIQQTRNVLRGDVEIQIYMEVESPHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPLQVLQTMGI--DPKSCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 181 GILRVRYLYRLPNGGLRLRSHNDAEYPDEVFSGEDIAREKIRILGWIFWWS 231


>gi|121634351|ref|YP_974596.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
 gi|120866057|emb|CAM09795.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
 gi|325131771|gb|EGC54472.1| putative transcriptional regulator [Neisseria meningitidis M6190]
 gi|325137661|gb|EGC60238.1| putative transcriptional regulator [Neisseria meningitidis ES14902]
          Length = 228

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    +     
Sbjct: 18  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAI---- 133
             K+                            G     +        +            
Sbjct: 73  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132

Query: 134 -QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N +      D L +     +++ K L    G  
Sbjct: 133 NTKNLSVISVKGDSMEGVLNDGDSILVNHSENT-PRDGLYVLRINENLLVKRLQIVPGGI 191

Query: 193 IDLMSLNCCYPVDTV----EMSDIEWIARILW 220
           I+++S N  YP   +       D+E I R+ W
Sbjct: 192 INVISANEAYPAFEINLNHPADDVEIIGRVEW 223


>gi|326569680|gb|EGE19732.1| peptidase S24-like protein [Moraxella catarrhalis BC1]
          Length = 234

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 65/225 (28%), Gaps = 16/225 (7%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +++     NL+   L+ K G++     +  +   + + R    + + + L      +  
Sbjct: 7   RLNQAMSAKNLSLRDLSEKTGINYEMIRRYSKG--QAKPRNDKMKLLAQCLGVPITWLDY 64

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNK-------WNTVGVPEI 123
                  +        +           +   F     F  G           T  +   
Sbjct: 65  GEGEMTKNNYKLAPITEWDDSTPLDDDEAEIPFYKDIAFACGYGAVNDDVTHETRKLRMG 124

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           +   + +  +         +D SM+P  + GD + ++   +     R+         + K
Sbjct: 125 KRTLSNLGVMPENAFAVTARDDSMMPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCK 184

Query: 184 VLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
            L       + ++S N   +P        +   + E +  +   S
Sbjct: 185 RLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVLGWVWSVS 229


>gi|294668761|ref|ZP_06733854.1| prophage MuMc02, peptidase, family S24 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309278|gb|EFE50521.1| prophage MuMc02, peptidase, family S24 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 231

 Score = 85.6 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 60/209 (28%), Gaps = 29/209 (13%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           + + LAR   +        ++            E   KI   T  ++  L+         
Sbjct: 15  SDADLARFLEISTPVVAGYRKRETVP------LEQCIKIAERTGVSLDWLILGKGEMKGG 68

Query: 83  TEKKEKEIPLLYFPPSG-----------SGGFFDSGVFPTGNKWNT--------VGVPEI 123
           +   E++  ++    +            +           GN            +   + 
Sbjct: 69  SAAPERKKSVMEEVWAALEENRSPFPDVAFVPLFDAEVGAGNGIEVYGENIIQLIPFSQS 128

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                G+Y              SM+P    GDI+++N A     GD + +      +  K
Sbjct: 129 WLAAEGLYI--RDLACLPVNGDSMIPSLTSGDIVLVNHAK--RNGDGVFVVRMGNALRVK 184

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
            L       + + S N  Y  + +  +++
Sbjct: 185 RLQWLANGDLRISSDNPIYQTEQITPAEL 213


>gi|312875029|ref|ZP_07735047.1| peptidase S24-like protein [Lactobacillus iners LEAF 2053A-b]
 gi|311089424|gb|EFQ47850.1| peptidase S24-like protein [Lactobacillus iners LEAF 2053A-b]
          Length = 229

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 57/231 (24%), Gaps = 20/231 (8%)

Query: 4   FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +K+I+   +     ++++  + L    G    + +       +   R    E +    
Sbjct: 3   LGNKEIFSQNLKYYMYKYDVDRNALCDTLGFKYMTVSDWIN--AKTYPRIDKIEILANYF 60

Query: 63  AATNETICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGG----------FFDSGVF 109
                 + +       D           ++  +  +                  +  G  
Sbjct: 61  NIKKSDLVEKQTDKQIDILPVYNQLTDIRKHKVYSYAHQQLDEQNSNLNKKRSIYVVGTS 120

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
             G               +        D     +  SM P      I+  +    +  G+
Sbjct: 121 AAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGE 177

Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 178 IGIFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 228


>gi|254261777|ref|ZP_04952831.1| putative repressor protein [Burkholderia pseudomallei 1710a]
 gi|254220466|gb|EET09850.1| putative repressor protein [Burkholderia pseudomallei 1710a]
          Length = 214

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 67/215 (31%), Gaps = 19/215 (8%)

Query: 14  DRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           DR+ E    TP S   +K   DP       R  +      P  +++  I  A  ++    
Sbjct: 10  DRLRELTGETPLSTTLKKIDADPNWAKPYARGNL------PGMDALVAIADAYGKS---- 59

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                      +       +       +  F     +   +    +     R        
Sbjct: 60  ---VDWLIGREDSTPTLARIHGSDGKQAQEFAYIKRYAARDGDPEITFAFRRRWIKDYLK 116

Query: 133 IQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            + +     + +D  M P +++ D ++++   Q   G+ L        IV +        
Sbjct: 117 AEVSNLAVVRIEDDLMAPTFQRRDNVLVDMGYQHKPGNGLYALRLEDSIVVRRTQKLSSG 176

Query: 192 SIDLMSLNCCYPVDTVEMS----DIEWIARILWAS 222
            + ++  N  YP D +       D E + +++W S
Sbjct: 177 KLRILCENENYPPDEIRPDENEFDFEIVGKVVWFS 211


>gi|206895347|ref|YP_002247099.1| LexA repressor [Coprothermobacter proteolyticus DSM 5265]
 gi|206737964|gb|ACI17042.1| LexA repressor [Coprothermobacter proteolyticus DSM 5265]
          Length = 198

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 44/224 (19%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   K++ +AI     +++  P+   L    G+         R   +        E
Sbjct: 7   MKELTARQKEVLDAIRTFIAQNHYPPTVRELCTILGISSP------RGVSK------HLE 54

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K                           + + L    P                   
Sbjct: 55  ALEK-----------------KGYIKRTSGHRSLVLPMEVPLIGKVTAGLKTLAVEELEG 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            + +         I+A        K +  SM      +GD++I+NS  +   GD ++   
Sbjct: 98  YLSM-------EDIFANP-NQFGLKVKGDSMQGAGILEGDVVIVNSDAEWINGDIIVAII 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  K +   +  +  L   N  Y    +   +++ + +++
Sbjct: 150 D-EMATVKRVKQDKYGNWWLEPDNPKYEPLPLN-EEVQIVGKVV 191


>gi|71738118|ref|YP_273650.1| repressor protein c2 [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558671|gb|AAZ37882.1| repressor protein c2, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 308

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        +    +A + G+  ++  +          +    E+++ + 
Sbjct: 91  MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 142

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121
            AT      L           E        L   P+ S  +        G+    V   P
Sbjct: 143 RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 199

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 200 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 259

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 260 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 299


>gi|19745754|ref|NP_606890.1| repressor protein [Streptococcus pyogenes MGAS8232]
 gi|139474145|ref|YP_001128861.1| phage repressor protein [Streptococcus pyogenes str. Manfredo]
 gi|306827718|ref|ZP_07460990.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782]
 gi|19747895|gb|AAL97389.1| putative repressor protein [Streptococcus pyogenes MGAS8232]
 gi|134272392|emb|CAM30648.1| putative phage repressor protein [Streptococcus pyogenes str.
           Manfredo]
 gi|304430036|gb|EFM33073.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782]
          Length = 254

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 40/244 (16%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  + +   LT   LA    +  T+    ++       R P   ++FK+  A + T
Sbjct: 10  IGSKIKELRKNKGLTQKELAILVNMGDTTIANYEKGF-----RTPKKNTLFKLANALSVT 64

Query: 69  ICQLLDLPFSDGRTTE--------------------KKEKEIPLLYFPPSGSGGFFDSGV 108
           I  L        +T+                        ++  +L F         +   
Sbjct: 65  IDDLFPPIKKSDKTSHELKIPTSPLVKKITTTVVELNVPRKQKVLDFATEQLKEQKNKIT 124

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDI 156
                 +      ++ +     Y                 D        SM P Y  G++
Sbjct: 125 SIEKKLYEYKVYEKLSAGTGYGYFGDGNYDTVFYDEELDYDFASWVFGDSMEPTYLNGEV 184

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWI 215
           +++        G         G    K +   +   + L+SLN  Y       S+    I
Sbjct: 185 VLIKQTGFDYEGGI-YAVEWDGQTYIKKVYREKDG-LRLVSLNKKYNDKFAPFSEGPRII 242

Query: 216 ARIL 219
             I+
Sbjct: 243 GEIV 246


>gi|85059804|ref|YP_455506.1| putative transcriptional regulator [Sodalis glossinidius str.
           'morsitans']
 gi|84780324|dbj|BAE75101.1| putative transcriptional regulator [Sodalis glossinidius str.
           'morsitans']
          Length = 240

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +       N T S LA+  G+  +S  K      +   +        ++      +  
Sbjct: 5   ERLKTAMREANCTQSTLAKAVGMAQSSVWKLTSGAAKSSTKVVEIARFLRVRPEWLASGI 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNK----- 114
             +       + +                      F          +     G+      
Sbjct: 65  GEMHNSDVSNKHSISDITSTRQKISVWGDVENNYDFSDKFVEISLLNVKLSAGSGSCELN 124

Query: 115 -WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
             +   +   +   + +    +     +   +SM P    GDI+ +N         +   
Sbjct: 125 EDSEFSIIFSKYSLHNMGVSPSAAKLVRVSGSSMEPALNNGDIVGINIDKTSIEDGKTYA 184

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD----IEWIARILWAS 222
                 +  K LIS     + + S N   YP + + +++    I  I ++ W+S
Sbjct: 185 ICHDDVLRIKTLISAP-GKVVIRSFNREEYPDEVMSLNEFRECIRVIGQVFWSS 237


>gi|319945880|ref|ZP_08020130.1| hypothetical transcriptional regulator [Streptococcus australis
           ATCC 700641]
 gi|319747945|gb|EFW00189.1| hypothetical transcriptional regulator [Streptococcus australis
           ATCC 700641]
          Length = 228

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 59/220 (26%), Gaps = 15/220 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   +T   +A + G+   +++  +R     +      + + +IL        
Sbjct: 5   EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVK--KPSKEKVKLLEQILDVPIGYFT 62

Query: 71  QLLDLPFSDGRTTEKK----------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L  +   +  + E K           ++             +             +   
Sbjct: 63  ELEIVRLYNTLSDEGKNNALSYVRNLAQKKQCKNVVSMSKKLYEYHVYEKMSAGIGSSVY 122

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            +              D        SM P Y+ G + ++        G  +         
Sbjct: 123 NDQNYDTVYFDEELAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNSQT 181

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             K +       + L+S+N  Y    +   +    +  I+
Sbjct: 182 YIKRVYREEHG-LRLVSINPNYQDILLSYDEDPRIVGIIV 220


>gi|229553743|ref|ZP_04442468.1| repressor lexA [Lactobacillus rhamnosus LMS2-1]
 gi|258538901|ref|YP_003173400.1| LexA repressor [Lactobacillus rhamnosus Lc 705]
 gi|229312885|gb|EEN78858.1| repressor lexA [Lactobacillus rhamnosus LMS2-1]
 gi|257150577|emb|CAR89549.1| LexA repressor [Lactobacillus rhamnosus Lc 705]
          Length = 208

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 55/217 (25%), Gaps = 31/217 (14%)

Query: 7   KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           K+I + I    E H   P+   + +  GL  +S                   ++   L  
Sbjct: 11  KQILQTIYEAIEDHGYPPTVREIGKSVGLSSSS-------------------TVAAYLEK 51

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                     L   D       E     L F    + G    G    G     +   +  
Sbjct: 52  LL-----AAGLIAKDPSKPRTIEVTTAGLDFIGVQAQGIPIVGTVAAGVPITAIENIDDY 106

Query: 125 SPHNGIYAIQTQ-DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            P               + Q +SM+ +    GD +I+        G  ++      +   
Sbjct: 107 FPVPDDLPYSADELFMLRVQGSSMIKIGILDGDQIIVKKQNDAENGQIVVAMTEEDEATV 166

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K     +   + L   N            +  +  ++
Sbjct: 167 KRFYKEKHG-VRLHPENDDMDDMYFPS--VTILGIVV 200


>gi|325697038|gb|EGD38925.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK160]
          Length = 225

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSALYTYPLLTAPHKKEVDQLASRLLERQRKISSLTAYKVLSVELAAGLGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|293569808|ref|ZP_06680895.1| LexA repressor [Enterococcus faecium E1071]
 gi|291587556|gb|EFF19433.1| LexA repressor [Enterococcus faecium E1071]
          Length = 207

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIFK 60
             ++   I     +    P+   +     L  TS       R   +G   R P+     +
Sbjct: 9   QIEVLRYIHEQVTQKGYPPTVREIGEAVQLSSTSTVHGHLARLEKKGFIQRDPTKPRAIE 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +                         EK        P          +    +  +   +
Sbjct: 69  LTKQ--------------------GLEKIGIRPTTIPVLGVVTAGEPILAVEDASDFFPI 108

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P   S        +        +  SM+      GD +I+        GD ++      +
Sbjct: 109 PPNLSSE------EGSLFMLTIRGDSMINAGILDGDNVIVRKQETAQNGDIVIAMTAEDE 162

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +     L   N       +    +  + R++
Sbjct: 163 ATCKRFYKEKN-FFRLQPENDLLEPIIL--DQVSILGRVV 199


>gi|290580238|ref|YP_003484630.1| putative transcriptional regulator [Streptococcus mutans NN2025]
 gi|254997137|dbj|BAH87738.1| putative transcriptional regulator [Streptococcus mutans NN2025]
          Length = 297

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E +        I   D        SM PL+  GD++ +     ++ G  +++     +  
Sbjct: 200 EKQETIKYPIPIPEHDIALIVNGNSMEPLFYNGDVIFVKKTKAIHHGQIIVVIVN-NEAY 258

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            K L  +  + I L+SLN  Y    ++  D IE I  ++
Sbjct: 259 VKKLYRK-NKEIRLISLNPDYDDIILKEDDTIEVIGTVI 296



 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 44/162 (27%), Gaps = 6/162 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I   + R+     +  S LA    +  +S N+  +         P   +I KI     
Sbjct: 15  KTISTNLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKS-----LPKIGNIQKIADYFG 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                +     S   ++   +                 D     +  +  T  +      
Sbjct: 70  LQKSDIDPRFASKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDET 129

Query: 127 HNGIYAIQTQDT-RHKTQDTSMLPLYRKGDILILNSAIQVNC 167
                A ++  T   K  D+ +        I+  ++ I+   
Sbjct: 130 TEDKVADKSNHTQYQKVVDSFIAKELNDQTIIHWDNVIKAKD 171


>gi|311234072|gb|ADP86926.1| putative phage repressor [Desulfovibrio vulgaris RCH1]
          Length = 217

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 17/216 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I   +  + E+  +T S + +  G  P + N+       G +  P    + + + A  
Sbjct: 12  DSILAKVKDLVEQ-GMTYSAIGKMLGKSPATVNRWV-TTGVGGDSTPFVNML-QYMEALG 68

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                +++                   Y     +     S +   G+        +    
Sbjct: 69  LKWGDIVENLE---------PAACGYGYVRKVQAKLGAGSSLITNGDLEGMYAFRQDFIN 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             G                SM P    G  +++N          +       +++ K LI
Sbjct: 120 EMGG--NPESLVMFDVIGASMEPTIPDGSTVLVNLRDTSIRSGLIYAVRVNDELLVKRLI 177

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMS--DIEWIARILW 220
            +    +   S N  +    ++    + E   R+ W
Sbjct: 178 -QEPGRLLCHSDNPTFGDTVIDGENPNFEVFGRVRW 212


>gi|163839489|ref|YP_001623894.1| LexA repressor [Renibacterium salmoninarum ATCC 33209]
 gi|162952965|gb|ABY22480.1| LexA repressor [Renibacterium salmoninarum ATCC 33209]
          Length = 287

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 64/224 (28%), Gaps = 11/224 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGR-NRWPSTES 57
           +   KKI E I R    +   PS   +    GL   +S  ++  +   +G   R P    
Sbjct: 62  TMRQKKILECIQRSISANGYPPSMREIGDVVGLASLSSVTHQLSQLEKQGYLRRDPKRPR 121

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWN 116
             ++L         +      D        K + +     +         G    G    
Sbjct: 122 AMEVLIPLTLESGSVDIEGLEDAEQLRSSAKGLNVAQLGSAQDTAMVPLVGRIAAGGPIL 181

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
              V +   P         +    K    SM+      GD +++    +   GD +    
Sbjct: 182 ADQVVDDVMPLPRQLVGHGELFMLKVAGDSMIDAAICDGDWVVVRRQNEAINGDIVAALL 241

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   K    +R     L+  N  Y     + +    + +++
Sbjct: 242 D-DESTVKTF-RQRDGHTWLLPQNTQYEPILGDYA--TIMGKVV 281


>gi|254302132|ref|ZP_04969490.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322324|gb|EDK87574.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 219

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 11/214 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + R+  +H  +  GLA+K  L  T  +K ++         P +++  + + A     
Sbjct: 4   GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVVAVYPEE 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            ++L   +      E  +KE  +     S        G    G  +  +  P+   P   
Sbjct: 58  REILKKEYLKETLPEIFQKEEAIKIVSNSEVLNLPVYGKASAGRGYLNMDSPDYYMPILR 117

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +    +    SM P    G+  +++        +++ +     +   K L  + 
Sbjct: 118 GNF-SKKSFFVEITGNSMEPTLEDGEFALVDPENTTYSKNKIYVVTYNDEGYIKRLEMKD 176

Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
             + I L S N  Y    +        +   R++
Sbjct: 177 KLKVITLKSDNPDYDDIDIPEEMQEYFQINGRVV 210


>gi|329116131|ref|ZP_08244848.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020]
 gi|326906536|gb|EGE53450.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020]
          Length = 230

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 68/230 (29%), Gaps = 21/230 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FS K+    + ++ ++H ++   L ++ G++  + +  ++       +     ++  I 
Sbjct: 1   MFSGKQ----LKKIRQQHKMSQEQLGQELGVNKMTISNWEKDKNSPNQKH--LNALVSIF 54

Query: 63  AATNETICQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFP 110
               +      ++     + T++              +E  ++  P      F       
Sbjct: 55  ETDQDYFNHYQEIIIPYKQLTKQNQSKVVTYSEKLLAQESKIITLPTKKKELFSYRVYES 114

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                      +              D        SM P Y  G+++++        G  
Sbjct: 115 LSAGTGYSYFGDGNYDVVFYDEQMDYDFASWVFGDSMEPTYLNGEVVLIKQEGFDYDG-A 173

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           +      G    K +       + L+SLN  Y        +    I +I+
Sbjct: 174 IYAVEWDGQTYIKKVYREEEG-LRLVSLNKKYSDKFAPFDENPRIIGKII 222


>gi|301512537|ref|ZP_07237774.1| transcriptional regulator PrtR [Acinetobacter baumannii AB058]
          Length = 232

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 56/211 (26%), Gaps = 7/211 (3%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA- 63
           +H  +     R+ E   ++    A+     P +    K+ G+       +          
Sbjct: 7   THPSVL----RLLEASGMSQEETAKAIDEFPQTITNWKKRGVSKAGALKAAAKFGVAANW 62

Query: 64  -ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T E   +  ++       T+       +             SG         T  +  
Sbjct: 63  ILTGEGKKEESNITKVVEWDTDTPLDNDEVEIPFYKEVLVSCGSGSLAEMVGNETRKLRL 122

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            ++         +          SM P+   G  + ++         ++      G    
Sbjct: 123 SKATLRQYGVDPSNAYALTAFGNSMSPVINNGATVYVDVGRTSIVDGKIYAINHGGLFKF 182

Query: 183 KVLISRRGRSIDLMSLNC-CYPVDTVEMSDI 212
           K L       + ++S N   YP + +   DI
Sbjct: 183 KYLYRLPKGGVKIVSENKEEYPDEYLTAEDI 213


>gi|167581994|ref|ZP_02374868.1| LexA repressor [Burkholderia thailandensis TXDOH]
 gi|167620159|ref|ZP_02388790.1| LexA repressor [Burkholderia thailandensis Bt4]
 gi|257139231|ref|ZP_05587493.1| LexA repressor [Burkholderia thailandensis E264]
 gi|172046092|sp|Q2SVP7|LEXA_BURTA RecName: Full=LexA repressor
          Length = 215

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                             L             G    G+   
Sbjct: 54  GVIELAAG----------ASRGIRLLGLDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRAEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  R G  ++L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 195


>gi|88657833|ref|YP_507799.1| DNA-binding protein [Ehrlichia chaffeensis str. Arkansas]
 gi|88599290|gb|ABD44759.1| DNA-binding protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 203

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 67/216 (31%), Gaps = 21/216 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++  +    LA KA +  +           G++  P+++ +  I    N +
Sbjct: 2   IVTRMRYQMDKMGINARELAHKADVGKSFVYDIL----SGKSTNPTSKKLMAIAKVLNVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   +                +  L                   +    + +        
Sbjct: 58  LSYFISDDNYTYGQNNVNIMPVYDLELENGKV----------ASSGDVNLYLSSNI---- 103

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            + +       +  +  SM+P     D+++++   ++     L +   +  +  + L   
Sbjct: 104 NLTSNMKNLRVYYVKGDSMIPTLMNQDVVLVDIGDKIPHPAGLFVIVDSVGVSIRRLEYL 163

Query: 189 RGR---SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           +      + ++S N  Y      + D+E + RI+W 
Sbjct: 164 KDNQKIKLHVVSDNKKYSSYECHLEDMEILGRIIWY 199


>gi|76809814|ref|YP_333407.1| LexA repressor [Burkholderia pseudomallei 1710b]
 gi|76579267|gb|ABA48742.1| LexA repressor [Burkholderia pseudomallei 1710b]
          Length = 235

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 21  MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 73

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                             L             G    G+   
Sbjct: 74  GVIELAAG----------ASRGIRLLGIDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 123

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 124 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 182

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  R G  ++L++ N  Y    V+ 
Sbjct: 183 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 215


>gi|296117066|ref|ZP_06835664.1| phage transcriptional regulator and peptidase [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976402|gb|EFG83182.1| phage transcriptional regulator and peptidase [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 260

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 80/239 (33%), Gaps = 28/239 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDP--TSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   +  + ER   +   LA+  G+    +S++  +    +          +  +L+   
Sbjct: 16  VSARLKALRERAGYSVRALAQDLGMGNKFSSYSFYEHKLKKDYLPVDLVRRLVPLLSERG 75

Query: 67  ETIC----------------------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           +                         +      +  R  +           P +GSG   
Sbjct: 76  DPPIAANEVWALSGVIPGGSDLNEGIERAARAQAPRRNADGTVTINEYDIAPHAGSGAIV 135

Query: 105 DSGVFPTGNKWNTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
                  G    +V      R+      +  +     +    SM P +  G+ +++++A 
Sbjct: 136 GETDSGAGEGHASVAAWHMPRAFVENYVSDPSALVILRVSGNSMEPDFMAGERVMVDTAH 195

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +V   D + +      +V K L+         I ++S+N  YP+D V+++D+    R++
Sbjct: 196 RVPSPDGVYVLWNGLGVVLKQLMLVPHSNPPRIRIISINPTYPMDEVDIADLVINGRVV 254


>gi|83719273|ref|YP_443002.1| LexA repressor [Burkholderia thailandensis E264]
 gi|83653098|gb|ABC37161.1| LexA repressor [Burkholderia thailandensis E264]
          Length = 235

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 21  MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 73

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                             L             G    G+   
Sbjct: 74  GVIELAAG----------ASRGIRLLGLDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 123

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 124 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRAEAKDGQIIVAR- 182

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  R G  ++L++ N  Y    V+ 
Sbjct: 183 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 215


>gi|54027192|ref|YP_121434.1| LexA repressor [Nocardia farcinica IFM 10152]
 gi|71658804|sp|Q5YP21|LEXA1_NOCFA RecName: Full=LexA repressor 1
 gi|54018700|dbj|BAD60070.1| putative LexA homolog [Nocardia farcinica IFM 10152]
          Length = 216

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 29/218 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++I E I      H   PS   +    GL   +S  +  R   E               
Sbjct: 18  QRRILEVIRDWVVEHGYAPSTRQIGAAVGLRSMSSVARHLRSLEE--------------R 63

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                       +                     P        + +    +  + + +P 
Sbjct: 64  GFLRRGEGVARPIDVRLFLHGTAAAAPSEDAVTVPVVGDIAAGAPILAEEHTDDLLTLPR 123

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                      +      + +  SM+      GD +++ S  + N GD +       +  
Sbjct: 124 ELVG-------RGTVFALRVRGDSMIDAAICDGDTVVVRSQREANSGDIV-AAMIGEEAT 175

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            KV   R    + L   N  Y    ++  +   + +++
Sbjct: 176 VKVFRRR-NGHVLLEPRNPAYD--VIDGDEAVILGKVV 210


>gi|53719453|ref|YP_108439.1| LexA repressor [Burkholderia pseudomallei K96243]
 gi|53723456|ref|YP_102890.1| LexA repressor [Burkholderia mallei ATCC 23344]
 gi|67640002|ref|ZP_00438825.1| repressor LexA [Burkholderia mallei GB8 horse 4]
 gi|121601271|ref|YP_993025.1| LexA repressor [Burkholderia mallei SAVP1]
 gi|124385072|ref|YP_001026358.1| LexA repressor [Burkholderia mallei NCTC 10229]
 gi|126440686|ref|YP_001058880.1| LexA repressor [Burkholderia pseudomallei 668]
 gi|126448526|ref|YP_001080368.1| LexA repressor [Burkholderia mallei NCTC 10247]
 gi|126454981|ref|YP_001066124.1| LexA repressor [Burkholderia pseudomallei 1106a]
 gi|134282250|ref|ZP_01768955.1| LexA repressor [Burkholderia pseudomallei 305]
 gi|167003649|ref|ZP_02269435.1| repressor LexA [Burkholderia mallei PRL-20]
 gi|167719715|ref|ZP_02402951.1| LexA repressor [Burkholderia pseudomallei DM98]
 gi|167738708|ref|ZP_02411482.1| LexA repressor [Burkholderia pseudomallei 14]
 gi|167815931|ref|ZP_02447611.1| LexA repressor [Burkholderia pseudomallei 91]
 gi|167824304|ref|ZP_02455775.1| LexA repressor [Burkholderia pseudomallei 9]
 gi|167845848|ref|ZP_02471356.1| LexA repressor [Burkholderia pseudomallei B7210]
 gi|167894417|ref|ZP_02481819.1| LexA repressor [Burkholderia pseudomallei 7894]
 gi|167902819|ref|ZP_02490024.1| LexA repressor [Burkholderia pseudomallei NCTC 13177]
 gi|167911064|ref|ZP_02498155.1| LexA repressor [Burkholderia pseudomallei 112]
 gi|167919084|ref|ZP_02506175.1| LexA repressor [Burkholderia pseudomallei BCC215]
 gi|217423732|ref|ZP_03455233.1| LexA repressor [Burkholderia pseudomallei 576]
 gi|226196418|ref|ZP_03792000.1| repressor LexA [Burkholderia pseudomallei Pakistan 9]
 gi|237812136|ref|YP_002896587.1| LexA repressor [Burkholderia pseudomallei MSHR346]
 gi|242314191|ref|ZP_04813207.1| repressor LexA [Burkholderia pseudomallei 1106b]
 gi|254177615|ref|ZP_04884270.1| LexA repressor [Burkholderia mallei ATCC 10399]
 gi|254179897|ref|ZP_04886496.1| LexA repressor [Burkholderia pseudomallei 1655]
 gi|254188699|ref|ZP_04895210.1| LexA repressor [Burkholderia pseudomallei Pasteur 52237]
 gi|254198417|ref|ZP_04904839.1| LexA repressor [Burkholderia pseudomallei S13]
 gi|254199831|ref|ZP_04906197.1| LexA repressor [Burkholderia mallei FMH]
 gi|254206156|ref|ZP_04912508.1| LexA repressor [Burkholderia mallei JHU]
 gi|254261809|ref|ZP_04952863.1| repressor LexA [Burkholderia pseudomallei 1710a]
 gi|254297733|ref|ZP_04965186.1| LexA repressor [Burkholderia pseudomallei 406e]
 gi|254358557|ref|ZP_04974830.1| LexA repressor [Burkholderia mallei 2002721280]
 gi|71658810|sp|Q62K79|LEXA_BURMA RecName: Full=LexA repressor
 gi|71658811|sp|Q63TX7|LEXA_BURPS RecName: Full=LexA repressor
 gi|166224559|sp|A3MJD2|LEXA_BURM7 RecName: Full=LexA repressor
 gi|166224560|sp|A2S339|LEXA_BURM9 RecName: Full=LexA repressor
 gi|166224561|sp|A1V472|LEXA_BURMS RecName: Full=LexA repressor
 gi|166224562|sp|A3NUV3|LEXA_BURP0 RecName: Full=LexA repressor
 gi|166224563|sp|A3N959|LEXA_BURP6 RecName: Full=LexA repressor
 gi|172046645|sp|Q3JSP6|LEXA_BURP1 RecName: Full=LexA repressor
 gi|52209867|emb|CAH35839.1| LexA repressor [Burkholderia pseudomallei K96243]
 gi|52426879|gb|AAU47472.1| lexA repressor [Burkholderia mallei ATCC 23344]
 gi|121230081|gb|ABM52599.1| lexA repressor [Burkholderia mallei SAVP1]
 gi|124293092|gb|ABN02361.1| repressor LexA [Burkholderia mallei NCTC 10229]
 gi|126220179|gb|ABN83685.1| repressor LexA [Burkholderia pseudomallei 668]
 gi|126228623|gb|ABN92163.1| LexA repressor [Burkholderia pseudomallei 1106a]
 gi|126241396|gb|ABO04489.1| repressor LexA [Burkholderia mallei NCTC 10247]
 gi|134246288|gb|EBA46377.1| LexA repressor [Burkholderia pseudomallei 305]
 gi|147749427|gb|EDK56501.1| LexA repressor [Burkholderia mallei FMH]
 gi|147753599|gb|EDK60664.1| LexA repressor [Burkholderia mallei JHU]
 gi|148027684|gb|EDK85705.1| LexA repressor [Burkholderia mallei 2002721280]
 gi|157807305|gb|EDO84475.1| LexA repressor [Burkholderia pseudomallei 406e]
 gi|157936378|gb|EDO92048.1| LexA repressor [Burkholderia pseudomallei Pasteur 52237]
 gi|160698654|gb|EDP88624.1| LexA repressor [Burkholderia mallei ATCC 10399]
 gi|169655158|gb|EDS87851.1| LexA repressor [Burkholderia pseudomallei S13]
 gi|184210437|gb|EDU07480.1| LexA repressor [Burkholderia pseudomallei 1655]
 gi|217393590|gb|EEC33611.1| LexA repressor [Burkholderia pseudomallei 576]
 gi|225931635|gb|EEH27640.1| repressor LexA [Burkholderia pseudomallei Pakistan 9]
 gi|237506802|gb|ACQ99120.1| LexA repressor [Burkholderia pseudomallei MSHR346]
 gi|238520634|gb|EEP84092.1| repressor LexA [Burkholderia mallei GB8 horse 4]
 gi|242137430|gb|EES23832.1| repressor LexA [Burkholderia pseudomallei 1106b]
 gi|243060832|gb|EES43018.1| repressor LexA [Burkholderia mallei PRL-20]
 gi|254220498|gb|EET09882.1| repressor LexA [Burkholderia pseudomallei 1710a]
          Length = 215

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                             L             G    G+   
Sbjct: 54  GVIELAAG----------ASRGIRLLGIDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  R G  ++L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 195


>gi|332873645|ref|ZP_08441590.1| putative HTH-type transcriptional regulator PrtR [Acinetobacter
           baumannii 6014059]
 gi|332738164|gb|EGJ69046.1| putative HTH-type transcriptional regulator PrtR [Acinetobacter
           baumannii 6014059]
          Length = 239

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 56/211 (26%), Gaps = 7/211 (3%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA- 63
           +H  +     R+ E   ++    A+     P +    K+ G+       +          
Sbjct: 14  THPSVL----RLLEASGMSQEETAKAIDEFPQTITNWKKRGVSKAGALKAAAKFGVAANW 69

Query: 64  -ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T E   +  ++       T+       +             SG         T  +  
Sbjct: 70  ILTGEGKKEESNITKVVEWDTDTPLDNDEVEIPFYKEVLVSCGSGSLAEMVGNETRKLRL 129

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            ++         +          SM P+   G  + ++         ++      G    
Sbjct: 130 SKATLRQYGVDPSNAYALTAFGNSMSPVINNGATVYVDVGRTSIVDGKIYAINHGGLFKF 189

Query: 183 KVLISRRGRSIDLMSLNC-CYPVDTVEMSDI 212
           K L       + ++S N   YP + +   DI
Sbjct: 190 KYLYRLPKGGVKIVSENKEEYPDEYLTAEDI 220


>gi|303241526|ref|ZP_07328027.1| transcriptional repressor, LexA family [Acetivibrio cellulolyticus
           CD2]
 gi|302590944|gb|EFL60691.1| transcriptional repressor, LexA family [Acetivibrio cellulolyticus
           CD2]
          Length = 211

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 57/220 (25%), Gaps = 27/220 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK-- 60
             +KI + ++   +     PS   +    G   TS   S              E + K  
Sbjct: 8   KQQKILDFLNEQVKLKGYPPSVREICAAVGFKSTSTVHS------------YLEKLEKEG 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++         L  +         K+      +   P          +    N  +T  +
Sbjct: 56  LIQKDATKPRALKIVRNDADEKKSKEVYSRREMVDVPIIGKVTAGQPILAVENIEDTFPL 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P         +   +     + Q  SM        D +++        GD ++      +
Sbjct: 116 PLD-------FVQGSTAFMLRVQGESMIEAGIFDKDFILVKQQSTATNGDIVVALI-GDE 167

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         + L   N       V   ++  + +++
Sbjct: 168 ATVKTFYK-ENGYVRLQPENKYLEPIIV-RDNLSILGKVI 205


>gi|121587531|ref|ZP_01677298.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio
           cholerae 2740-80]
 gi|254225718|ref|ZP_04919324.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio
           cholerae V51]
 gi|121548262|gb|EAX58330.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio
           cholerae 2740-80]
 gi|125621726|gb|EAZ50054.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio
           cholerae V51]
          Length = 245

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 14/219 (6%)

Query: 9   IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I    +R+ E    ++    A+K GL              G   +PS + +  I   +N+
Sbjct: 25  IMRFPERLKEAIGDISIRSFAKKCGLSEAVVRNYL-----GGKTFPSLDKLALISEISNK 79

Query: 68  TICQLLDLPFSDGRTTEKKE----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            +  L     +D   +E            +  P          G     N   T  +   
Sbjct: 80  PLEWLCSGATTDYSVSEPSAFYSIPMDEFVMIPGYRIQVSAGHGALNPENMEPTRYLAFR 139

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           R   N     +        +  SM P     D L+++ A        + I     ++  K
Sbjct: 140 RKWLNYRGFNEKDLAIVWAKGDSMEPTIHNNDTLVVHMARNKPQDGHIYIFRNGDELFVK 199

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
              S    +  L+S N  Y    +   +    + + +++
Sbjct: 200 RYQSML-GTWRLISDNAFYSPVDIPKQEQHQFDVVGQVV 237


>gi|118586847|ref|ZP_01544281.1| transcriptional regulator LexA [Oenococcus oeni ATCC BAA-1163]
 gi|290890480|ref|ZP_06553555.1| hypothetical protein AWRIB429_0945 [Oenococcus oeni AWRIB429]
 gi|118432679|gb|EAV39411.1| transcriptional regulator LexA [Oenococcus oeni ATCC BAA-1163]
 gi|290479876|gb|EFD88525.1| hypothetical protein AWRIB429_0945 [Oenococcus oeni AWRIB429]
          Length = 212

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 62/234 (26%), Gaps = 45/234 (19%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGI--EGRNR 51
           M       I   I          P+   +    GL  TS      ++ ++ G+  +   +
Sbjct: 1   MAETKQLGILRFIYEKQNEKGYPPTVREIGEAVGLSSTSTVHGHIDRLEKHGLLHKDPTK 60

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             + E   K L A                    +   ++P++    +G            
Sbjct: 61  PRAIEITEKGLRALGVP----------------ETPGKVPIIGLVTAGMPILAVEQ---- 100

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                 + +P                   +   TSM+ +    GD++ +      + GD 
Sbjct: 101 -AATEFLPIPSDLERF------DGDLFVLRVSGTSMINIGILDGDMVFVRKQDYADNGDI 153

Query: 171 LLIKPRT-----GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++          G+   K           L   N       V   ++  + +++
Sbjct: 154 VVAMTTDFGNGEGEATVKRFFKESN-HYRLQPENDTMAPIIV--ENVSILGKVV 204


>gi|218960459|ref|YP_001740234.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans]
 gi|167729116|emb|CAO80027.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans]
          Length = 240

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 33/235 (14%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + ++ +   +    LA+   ++P++ ++ +          PS E++ +++   N  
Sbjct: 2   IGERLKQIRQVLGIKQVDLAKVLKINPSAISQMESGRTN-----PSLETLSELVVNYNVN 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEI--- 123
           +  L+        T      +               +  V    +    +TV +P     
Sbjct: 57  LHWLITGIGKMFNTANDTSSQNGSWDNFQKLLNDRLEEIVQAHLDLMDSDTVEIPVSGEI 116

Query: 124 ----------------RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
                               + I          +    SM P  R  D++++    +   
Sbjct: 117 AAGEPMENYGTLLDVVTVRRSLINGSLNNFVALRVNGRSMEPDIRNQDVVLIRYCNEWRE 176

Query: 168 --GDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMS---DIEWIA 216
             G    ++   G I  K LI    +  I L+S+N  Y    ++     D+  I 
Sbjct: 177 LAGKICAVRID-GGITLKRLILDDVQKMIVLLSINENYQPILIDPDSHTDVTLIG 230


>gi|50955203|ref|YP_062491.1| SOS response regulator [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71658813|sp|Q6AE10|LEXA_LEIXX RecName: Full=LexA repressor
 gi|50951685|gb|AAT89386.1| SOS response regulator [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 224

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 30/224 (13%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDP-TSF-NKSKRFGIEGR-NRWPSTE 56
            S K+  I + I R   +    PS   +    GL   +S  ++  +  + G   R P+  
Sbjct: 17  LSEKQLAILDVIQRSVSQRGYPPSMREIGDAVGLSSLSSVTHQLNQLELSGYLRRDPNRP 76

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +IL                      + +  +      P          +        
Sbjct: 77  RALEILIDLPSAA-----------APDFESQTPVGDAAMVPLVGRIAAGVPITAEQQVEE 125

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
              +P     +        +    K    SM+      GD +++ +      GD +    
Sbjct: 126 VFPLPRQLVGN-------GELFMLKVVGESMIDAAICDGDWVVVRAQNTAENGDIVAAML 178

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   KV   +R     L+  N  +     + S    + +++
Sbjct: 179 D-EEATVKVF-RQRDGHTWLLPRNSNFEPILGDFSQ--ILGKVV 218


>gi|88855441|ref|ZP_01130105.1| SOS response regulator [marine actinobacterium PHSC20C1]
 gi|88815348|gb|EAR25206.1| SOS response regulator [marine actinobacterium PHSC20C1]
          Length = 229

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 66/226 (29%), Gaps = 30/226 (13%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDP-TSF-NKSKRFGIEGR-NRWPS 54
           TS S K+  I E I R        PS   +    GL   +S  ++  +  + G   R P+
Sbjct: 20  TSLSAKQLAILEMIQRAVATQGYPPSMREIGDAVGLSSLSSVTHQLNQLELSGYVRRDPN 79

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                ++L      + +   +  S G                P          +    + 
Sbjct: 80  RPRAIEVLIDVPSAVDESSTISPSMGDAAM-----------VPLVGRIAAGIPITAEQHV 128

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLI 173
                +P            +      K    SM+      GD +++        GD +  
Sbjct: 129 EEVFPLPRQLVG-------KGDLFMLKVVGDSMIDAAICDGDWVVVRQQQTAENGDIVAA 181

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   KV   +R     L+  N  +     + + +  + +++
Sbjct: 182 MLD-DEATVKVF-RQRDGHTWLLPRNSNFEPILGDYAQV--LGKVV 223


>gi|322373520|ref|ZP_08048056.1| putative repressor protein [Streptococcus sp. C150]
 gi|321278562|gb|EFX55631.1| putative repressor protein [Streptococcus sp. C150]
          Length = 227

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 20/222 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   +T   +A + G+   +++  +R   E     PS E + ++         
Sbjct: 5   EKLKARRKELKITQKDIADQLGISYQAYSAWERGVKE-----PSKEKVNRLEQILRVPKG 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
              ++  +        + +  +L +            V  + N +      ++ +     
Sbjct: 60  YFTEIEIARLYNVLSNKGQNQVLEYTRRLVQEESRKIVTVSENLYEYHVYEKMSAGIGAS 119

Query: 131 YAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                             D        SM P Y    + ++        G  +       
Sbjct: 120 VYDNRNYDTVYFNEELAHDFASWVFGDSMEPKYHNDSVALIRETGFDYDG-AVYAVVWNS 178

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
               K +   +   + L+S+N  Y    +   +    + +I+
Sbjct: 179 QTFIKKVYREKEG-LRLVSINKAYKDIYIPYDENPRIVGKIV 219


>gi|227551362|ref|ZP_03981411.1| LexA repressor [Enterococcus faecium TX1330]
 gi|257887526|ref|ZP_05667179.1| transcriptional repressor LexA [Enterococcus faecium 1,141,733]
 gi|257896021|ref|ZP_05675674.1| transcriptional repressor LexA [Enterococcus faecium Com12]
 gi|257898649|ref|ZP_05678302.1| transcriptional repressor LexA [Enterococcus faecium Com15]
 gi|293378807|ref|ZP_06624964.1| repressor LexA [Enterococcus faecium PC4.1]
 gi|293570532|ref|ZP_06681587.1| LexA repressor [Enterococcus faecium E980]
 gi|227179481|gb|EEI60453.1| LexA repressor [Enterococcus faecium TX1330]
 gi|257823580|gb|EEV50512.1| transcriptional repressor LexA [Enterococcus faecium 1,141,733]
 gi|257832586|gb|EEV59007.1| transcriptional repressor LexA [Enterococcus faecium Com12]
 gi|257836561|gb|EEV61635.1| transcriptional repressor LexA [Enterococcus faecium Com15]
 gi|291609478|gb|EFF38745.1| LexA repressor [Enterococcus faecium E980]
 gi|292642600|gb|EFF60753.1| repressor LexA [Enterococcus faecium PC4.1]
          Length = 207

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIFK 60
             ++   I     +    P+   +     L  TS       R   +G   R P+     +
Sbjct: 9   QIEVLRYIHEQVTQKGYPPTVREIGEAVQLSSTSTVHGHLARLEKKGFIQRDPTKPRAIE 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +                         EK        P          +    +  +   +
Sbjct: 69  LTKQ--------------------GLEKIGIRPTTIPVLGVVTAGEPILAVEDASDFFPI 108

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P   S        +        +  SM+      GD +I+        GD ++      +
Sbjct: 109 PPNLSSE------EGSLFMLTIRGDSMINAGILDGDNVIVRKQETAQNGDIVIAMTAEDE 162

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +     L   N       +    +  + R++
Sbjct: 163 ATCKRFYKEKN-YFRLQPENDLLEPIIL--DQVSILGRVV 199


>gi|11558267|emb|CAC17802.1| LexA repressor [Pseudomonas putida]
          Length = 202

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E K           +   G    G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGLETK-----------AEENGLPIIGRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AEQHIEQSCNINPSFFHPHADYLLRVHGMSMKDVGIFDGDLLAVHTCREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ +
Sbjct: 154 -GDEVTVKRFKR-EGTKVWLLAENPEFAPIEVDLKE 187


>gi|25028379|ref|NP_738433.1| LexA repressor [Corynebacterium efficiens YS-314]
 gi|259507435|ref|ZP_05750335.1| LexA repressor [Corynebacterium efficiens YS-314]
 gi|23493664|dbj|BAC18633.1| putative SOS response repressor LexA [Corynebacterium efficiens
           YS-314]
 gi|259164923|gb|EEW49477.1| LexA repressor [Corynebacterium efficiens YS-314]
          Length = 269

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 19/222 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            ++I E I          PS   +   AGL  TS    +   +E +    R P+      
Sbjct: 53  QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 112

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +                    T     +        F P        S +    N     
Sbjct: 113 VRHLPETDNRTKAGPKAKARPTAGASPQPELASSTSFIPVVGKIAAGSPILAEQNIEEYY 172

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P              +    +    SM       GD +++ S      G+ +      
Sbjct: 173 PLPADIVG-------DGELYMLQVVGESMRDAGILDGDWVVVRSQPVAEQGEFV-AAMIE 224

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   K         I L+  N  +        + E + +++
Sbjct: 225 GEATVKEFHKDASG-IWLLPHNDSFAPI--PAENAEIMGKVV 263


>gi|238852600|ref|ZP_04643010.1| repressor LexA [Lactobacillus gasseri 202-4]
 gi|238834746|gb|EEQ26973.1| repressor LexA [Lactobacillus gasseri 202-4]
          Length = 207

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 29/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I   I    E     P+   +     L  TS        +E +       +  + +
Sbjct: 8   KQLEILRFIYDTVEERAFPPTVREICSAVDLSSTSTVHGHLARLEKKGYILKDATKPRAI 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T +                  +E         P          +    +      +P 
Sbjct: 68  EVTEKG-----------------REALGIKPKDIPIVGVVTAGQPILAVQDIDEYFPLPP 110

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                        +    +    SM+      GD +I+      N G+ ++      +  
Sbjct: 111 DLENDA------GELFMLRVHGESMINAGILNGDHVIVRKQSSANNGEIVVAMTEDSEAT 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       + +  ++ + +++
Sbjct: 165 VKRFFK-EDGYYRLQPENDTMDPIILPV--VQILGKVV 199


>gi|270290331|ref|ZP_06196556.1| LexA repressor [Pediococcus acidilactici 7_4]
 gi|304384850|ref|ZP_07367196.1| repressor LexA [Pediococcus acidilactici DSM 20284]
 gi|270281112|gb|EFA26945.1| LexA repressor [Pediococcus acidilactici 7_4]
 gi|304329044|gb|EFL96264.1| repressor LexA [Pediococcus acidilactici DSM 20284]
          Length = 209

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 41/227 (18%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKS-KRFGIEGRNRWPS 54
           S     + E I +  +     P+   + +  GL  TS      ++  K   +E     P 
Sbjct: 6   STKQLNVLEYIYQTVQTQGYPPTVREIGKAIGLSSTSTVHGHIDRLQKNGYLEKDPTKPR 65

Query: 55  -TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
             E   + L A                                P          +     
Sbjct: 66  ALEITAQGLEALGIQENGEQ----------------------IPVLGVVTAGEPILAVEE 103

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +   VP      +      +       +  SM+      GD +I+      + G+ ++
Sbjct: 104 ATDFFPVPPEFKNES------SDLFMLTIRGESMINAGILSGDQVIVRKQSTADNGEIVI 157

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +   K         I L   N       ++   +  + +++
Sbjct: 158 AMTDENEATCKRFFKETD-HIRLQPENDTMSPIILDN--VTILGKVV 201


>gi|298529607|ref|ZP_07017010.1| putative phage repressor [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511043|gb|EFI34946.1| putative phage repressor [Desulfonatronospira thiodismutans ASO3-1]
          Length = 209

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 18/203 (8%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           T   LA   G+  T+   +K+ G+             KI +        +        + 
Sbjct: 18  TQRQLADILGVGATAITLAKKRGVPASWS-------LKIASVFGINPNWIQTGKGPVYQA 70

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
             +    +P +       GG  D       N  + +          G           + 
Sbjct: 71  GREGTFFVPRVSARACAGGGSLDVRD----NIVDEIPFATDWLRKKGH---PENLVLMEV 123

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P   +GD ++++   +   G    +      +  K +       + L+S N  Y
Sbjct: 124 MGDSMSPELEEGDNILVDLGQKKITGRSPFVLGLEEGLQVKRV-ESAPGIVILLSTNPRY 182

Query: 203 PVDTVEMSDI---EWIARILWAS 222
              T+   ++     + R+LW+S
Sbjct: 183 SSITLHGDEVDSLRIVGRVLWSS 205


>gi|327473429|gb|EGF18849.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK408]
          Length = 225

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT + + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLTQASIYQELGVSRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSALYTYPLLTPPHKKEVDKLASRLLERQRKISSLTAYKVLSVELAAGLGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|199596911|ref|ZP_03210344.1| Transcriptional regulator, xre family protein [Lactobacillus
           rhamnosus HN001]
 gi|258507712|ref|YP_003170463.1| LexA repressor [Lactobacillus rhamnosus GG]
 gi|199592044|gb|EDZ00118.1| Transcriptional regulator, xre family protein [Lactobacillus
           rhamnosus HN001]
 gi|257147639|emb|CAR86612.1| LexA repressor [Lactobacillus rhamnosus GG]
 gi|259649059|dbj|BAI41221.1| transcriptional repressor [Lactobacillus rhamnosus GG]
          Length = 208

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 55/217 (25%), Gaps = 31/217 (14%)

Query: 7   KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           K+I + I    E H   P+   + +  GL  +S                   ++   L  
Sbjct: 11  KQILQTIYEAIEDHGYPPTVREIGKSVGLSSSS-------------------TVAAYLEK 51

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                     L   D       E     L F    + G    G    G     +   +  
Sbjct: 52  LL-----AAGLIAKDPSKPRTIEVTAAGLDFIGVQAQGIPIVGTVAAGVPITAIENIDDY 106

Query: 125 SPHNGIYAIQTQ-DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            P               + Q +SM+ +    GD +I+        G  ++      +   
Sbjct: 107 FPVPDDLPYSADELFMLRVQGSSMIKIGILDGDQIIVKKQNDAENGQIVVAMTEEDEATV 166

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K     +   + L   N            +  +  ++
Sbjct: 167 KRFYKEKHG-VRLHPENDDMDDMYFPS--VTILGIVV 200


>gi|145300731|ref|YP_001143572.1| prophage transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853503|gb|ABO91824.1| prophage transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 238

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 63/211 (29%), Gaps = 20/211 (9%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT- 83
              AR+A +     +  KR+  EG    P  +    +  A   T   L+        +  
Sbjct: 30  RAFARRADMSD---SGLKRYLYEGTI--PPIDRALNLARAGGVTFDWLVFGIGDGVNSPL 84

Query: 84  ----EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------EIRSPHNGIYAI 133
                         Y     +           G+       P                  
Sbjct: 85  SHVSHDATSGAQGSYRADEFTTISAYQVEASAGHGSQITDEPLAEPMAFRSDWLRREGFE 144

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             +    + +  SM P    GD++++         D L +    G +  K L    G  I
Sbjct: 145 PAKMAVIRAKGDSMEPTINDGDVILIRLKNGEAPRDGLYVLRLEGGLFVKRLQFDLGG-I 203

Query: 194 DLMSLNCCYPVDTV---EMSDIEWIARILWA 221
            ++S N  Y    +   E+++++ + R++WA
Sbjct: 204 RVISDNPLYKSRDLNKAELAELDLVGRVVWA 234


>gi|68171374|ref|ZP_00544768.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67999199|gb|EAM85855.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 211

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 68/216 (31%), Gaps = 21/216 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++  +    LA KA +  +           G++  P+++ +  I    N +
Sbjct: 10  IVTRMRYQMDKMGINARELAHKADVGKSFVYDIL----SGKSTNPTSKKLMAIAKVLNVS 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+                +  L                   +    + +        
Sbjct: 66  LSYLISDDNYTYGQNNVNIMPVYDLELENGKV----------ASSGDVNLYLSSNI---- 111

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            + +       +  +  SM+P     D+++++   ++     L +   +  +  + L   
Sbjct: 112 NLTSNMKNLRVYYVKGDSMIPTLMNQDVVLVDIGDKIPHPAGLFVIVDSVGVSIRRLEYL 171

Query: 189 RGR---SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           +      + ++S N  Y      + D+E + RI+W 
Sbjct: 172 KDNQKIKLHVVSDNKKYSSYECHLEDMEILGRIIWY 207


>gi|29427796|sp|Q8FPF5|LEXA_COREF RecName: Full=LexA repressor
          Length = 232

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 19/222 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            ++I E I          PS   +   AGL  TS    +   +E +    R P+      
Sbjct: 16  QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 75

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEI--PLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +                    T     +        F P        S +    N     
Sbjct: 76  VRHLPETDNRTKAGPKAKARPTAGASPQPELASSTSFIPVVGKIAAGSPILAEQNIEEYY 135

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P              +    +    SM       GD +++ S      G+ +      
Sbjct: 136 PLPADIVG-------DGELYMLQVVGESMRDAGILDGDWVVVRSQPVAEQGEFV-AAMIE 187

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   K         I L+  N  +        + E + +++
Sbjct: 188 GEATVKEFHKDASG-IWLLPHNDSFAPI--PAENAEIMGKVV 226


>gi|167562848|ref|ZP_02355764.1| LexA repressor [Burkholderia oklahomensis EO147]
 gi|167570025|ref|ZP_02362899.1| LexA repressor [Burkholderia oklahomensis C6786]
          Length = 215

 Score = 85.2 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 61/214 (28%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MIKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                     +       L             G    G+   
Sbjct: 54  GVIELAAG----------ASRGIRLIGIEDSPHQLTLPHAALMQLSLPLVGRVAAGSPIL 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 104 AQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRTEAKDGQIIVAR- 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  R G  ++L++ N  Y    V+ 
Sbjct: 163 LGDDVTVKRLKRRPGG-VELIAENPDYENIFVKA 195


>gi|157149913|ref|YP_001449951.1| putative transcriptional repressor [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157074707|gb|ABV09390.1| putative transcriptional repressor [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 225

 Score = 85.2 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 59/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSALYTYPLLTLPHKKEVDQLASRLLERQRKISSLTAYKVLSVELAAGLGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L  +N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLEPINPDYEDLFAPYEDQPTIVGIVV 217


>gi|29376142|ref|NP_815296.1| LexA repressor [Enterococcus faecalis V583]
 gi|227518770|ref|ZP_03948819.1| LexA repressor [Enterococcus faecalis TX0104]
 gi|227553381|ref|ZP_03983430.1| LexA repressor [Enterococcus faecalis HH22]
 gi|229545804|ref|ZP_04434529.1| LexA repressor [Enterococcus faecalis TX1322]
 gi|229549997|ref|ZP_04438722.1| LexA repressor [Enterococcus faecalis ATCC 29200]
 gi|256853143|ref|ZP_05558513.1| transcriptional repressor LexA [Enterococcus faecalis T8]
 gi|293382977|ref|ZP_06628895.1| repressor LexA [Enterococcus faecalis R712]
 gi|293389534|ref|ZP_06633991.1| repressor LexA [Enterococcus faecalis S613]
 gi|307271000|ref|ZP_07552283.1| repressor LexA [Enterococcus faecalis TX4248]
 gi|307273206|ref|ZP_07554452.1| repressor LexA [Enterococcus faecalis TX0855]
 gi|307274943|ref|ZP_07556106.1| repressor LexA [Enterococcus faecalis TX2134]
 gi|307278056|ref|ZP_07559140.1| repressor LexA [Enterococcus faecalis TX0860]
 gi|307289124|ref|ZP_07569080.1| repressor LexA [Enterococcus faecalis TX0109]
 gi|307291978|ref|ZP_07571847.1| repressor LexA [Enterococcus faecalis TX0411]
 gi|312900778|ref|ZP_07760075.1| repressor LexA [Enterococcus faecalis TX0470]
 gi|312903326|ref|ZP_07762506.1| repressor LexA [Enterococcus faecalis TX0635]
 gi|312907552|ref|ZP_07766543.1| repressor LexA [Enterococcus faecalis DAPTO 512]
 gi|312910170|ref|ZP_07769017.1| repressor LexA [Enterococcus faecalis DAPTO 516]
 gi|312951512|ref|ZP_07770408.1| repressor LexA [Enterococcus faecalis TX0102]
 gi|44888101|sp|Q834R0|LEXA_ENTFA RecName: Full=LexA repressor
 gi|29343604|gb|AAO81366.1| transcriptional repressor LexA [Enterococcus faecalis V583]
 gi|227073765|gb|EEI11728.1| LexA repressor [Enterococcus faecalis TX0104]
 gi|227177486|gb|EEI58458.1| LexA repressor [Enterococcus faecalis HH22]
 gi|229304910|gb|EEN70906.1| LexA repressor [Enterococcus faecalis ATCC 29200]
 gi|229309116|gb|EEN75103.1| LexA repressor [Enterococcus faecalis TX1322]
 gi|256711602|gb|EEU26640.1| transcriptional repressor LexA [Enterococcus faecalis T8]
 gi|291079642|gb|EFE17006.1| repressor LexA [Enterococcus faecalis R712]
 gi|291081151|gb|EFE18114.1| repressor LexA [Enterococcus faecalis S613]
 gi|306496976|gb|EFM66524.1| repressor LexA [Enterococcus faecalis TX0411]
 gi|306499833|gb|EFM69194.1| repressor LexA [Enterococcus faecalis TX0109]
 gi|306505453|gb|EFM74639.1| repressor LexA [Enterococcus faecalis TX0860]
 gi|306508391|gb|EFM77498.1| repressor LexA [Enterococcus faecalis TX2134]
 gi|306510191|gb|EFM79215.1| repressor LexA [Enterococcus faecalis TX0855]
 gi|306512498|gb|EFM81147.1| repressor LexA [Enterococcus faecalis TX4248]
 gi|310626580|gb|EFQ09863.1| repressor LexA [Enterococcus faecalis DAPTO 512]
 gi|310630478|gb|EFQ13761.1| repressor LexA [Enterococcus faecalis TX0102]
 gi|310633202|gb|EFQ16485.1| repressor LexA [Enterococcus faecalis TX0635]
 gi|311289443|gb|EFQ67999.1| repressor LexA [Enterococcus faecalis DAPTO 516]
 gi|311292259|gb|EFQ70815.1| repressor LexA [Enterococcus faecalis TX0470]
 gi|315027248|gb|EFT39180.1| repressor LexA [Enterococcus faecalis TX2137]
 gi|315029367|gb|EFT41299.1| repressor LexA [Enterococcus faecalis TX4000]
 gi|315033987|gb|EFT45919.1| repressor LexA [Enterococcus faecalis TX0017]
 gi|315036996|gb|EFT48928.1| repressor LexA [Enterococcus faecalis TX0027]
 gi|315147283|gb|EFT91299.1| repressor LexA [Enterococcus faecalis TX4244]
 gi|315150518|gb|EFT94534.1| repressor LexA [Enterococcus faecalis TX0012]
 gi|315152465|gb|EFT96481.1| repressor LexA [Enterococcus faecalis TX0031]
 gi|315155743|gb|EFT99759.1| repressor LexA [Enterococcus faecalis TX0043]
 gi|315158091|gb|EFU02108.1| repressor LexA [Enterococcus faecalis TX0312]
 gi|315164033|gb|EFU08050.1| repressor LexA [Enterococcus faecalis TX1302]
 gi|315169017|gb|EFU13034.1| repressor LexA [Enterococcus faecalis TX1341]
 gi|315169746|gb|EFU13763.1| repressor LexA [Enterococcus faecalis TX1342]
 gi|315172293|gb|EFU16310.1| repressor LexA [Enterococcus faecalis TX1346]
 gi|315575849|gb|EFU88040.1| repressor LexA [Enterococcus faecalis TX0309B]
 gi|315577688|gb|EFU89879.1| repressor LexA [Enterococcus faecalis TX0630]
 gi|315580501|gb|EFU92692.1| repressor LexA [Enterococcus faecalis TX0309A]
 gi|327535151|gb|AEA93985.1| repressor lexA [Enterococcus faecalis OG1RF]
 gi|329571682|gb|EGG53363.1| repressor LexA [Enterococcus faecalis TX1467]
          Length = 209

 Score = 85.2 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 54/215 (25%), Gaps = 29/215 (13%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++ + I    E     P+   + +   L  TS        +E +       +  + +  T
Sbjct: 14  EVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRDPTKPRAIELT 73

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            E +                 EK        P          +       +   +P    
Sbjct: 74  PEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEASDFFPLPPDLR 116

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                            +  SM+      GD +I+      N GD ++      +   K 
Sbjct: 117 TEENAL------FMLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAMTDEDEATCKR 170

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                   I L   N       ++   +  + +++
Sbjct: 171 FFR-EVDHIRLQPENDALAPILLDN--VTILGKVV 202


>gi|94499501|ref|ZP_01306038.1| LexA repressor [Oceanobacter sp. RED65]
 gi|94428255|gb|EAT13228.1| LexA repressor [Oceanobacter sp. RED65]
          Length = 202

 Score = 85.2 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 56/215 (26%), Gaps = 37/215 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I +  +     P  + +A++ G                        
Sbjct: 1   MIKLTARQQQVLDLIKQAIDDTGYPPTRAEIAQELGFKSP-------------------- 40

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 41  -----------NAAEEHLKALARKGAIEMIPGASRGIRLAQQEETGLPLIGRVAAGEPIL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E        +   T D   +    SM  +    GD++ ++   QV  G  ++ + 
Sbjct: 90  AQEHVERHVQLPRDFFHPTADFLLEVHGDSMKDIGIMNGDLIAVHKTQQVRNGQIVVARV 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            + ++  K     +   + L+  N  Y    V++ 
Sbjct: 150 NSEEVTVKRFQKDKN-IVKLLPENSEYSPIVVDLE 183


>gi|310779861|ref|YP_003968193.1| phage repressor [Ilyobacter polytropus DSM 2926]
 gi|309749184|gb|ADO83845.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
          Length = 236

 Score = 85.2 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 56/233 (24%), Gaps = 29/233 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +             +++  G   ++    K        R P  + I K ++A      
Sbjct: 7   KYLSNFMADKGYKLEYISQATGASVSAIGHYKTGE-----RIPKDDFIEKFISAFISDNK 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG---------------------FFDSGVF 109
           +   + +   R    +     +                                      
Sbjct: 62  ESEKVRYLISRDRTPRPIIEKIEDLERKLEDSKNIKNQSNISISKLKSGSTEMIQVPVYN 121

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                      PE         ++            SM P  + G  +++   I+V   D
Sbjct: 122 SVSAGSGLEPSPEPVDVLLLPKSVAEGCVIINVWGDSMEPTIKDGYAVMVKREIEVANND 181

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILWA 221
             +     G+ + K           L S N  YP   +    + +   +++W 
Sbjct: 182 IGIFIH-EGEALVKRY-RCFDGKCYLYSDNQNYPPREIRKNDEFKVCGKVIWI 232


>gi|289565840|ref|ZP_06446282.1| LOW QUALITY PROTEIN: LexA repressor [Enterococcus faecium D344SRF]
 gi|289162383|gb|EFD10241.1| LOW QUALITY PROTEIN: LexA repressor [Enterococcus faecium D344SRF]
          Length = 155

 Score = 85.2 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 10/128 (7%)

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151
               P          +    +  +   +P   S        +        +  SM+    
Sbjct: 29  PTTIPVLGVVTAGEPILAVEDASDFFPIPPNLSSE------EGSLFMLTIRGDSMINAGI 82

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             GD +I+        GD ++      +   K     +     L   N       +    
Sbjct: 83  LDGDNVIVRKQETAQNGDIVIAMTAEDEATCKRFYKEKN-FFRLQPENDLLEPIIL--DQ 139

Query: 212 IEWIARIL 219
           +  + R++
Sbjct: 140 VSILGRVV 147


>gi|184201222|ref|YP_001855429.1| LexA repressor [Kocuria rhizophila DC2201]
 gi|183581452|dbj|BAG29923.1| LexA repressor [Kocuria rhizophila DC2201]
          Length = 252

 Score = 85.2 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 57/229 (24%), Gaps = 19/229 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTES 57
             KI  A+ R        PS   +    GL   S       + +++G   R  R P    
Sbjct: 22  QAKILGAVQRSIADRGYPPSMREIGDIVGLASLSSVTHQLGQLEKWGYLRRDPRRPRAME 81

Query: 58  IFK------ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           + +      +              P     +               +        G    
Sbjct: 82  VLRPLSQQELDRHLGAAESAGEQSPSGASVSPLVPTMSAVPAVDEDAAMVPVPLVGRIAA 141

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDR 170
           G         E        +    Q    +    SM+      GD +++        GD 
Sbjct: 142 GGPITAEQSVEGVYSLPRQFVGHGQLFMLRVSGDSMIDAAICDGDWVVVRQQNSAENGD- 200

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K    +R     L+  N  Y     + +    + +++
Sbjct: 201 VVAALLDDEATVKTF-RQRDGHTWLLPQNTRYEPILGDHA--TVMGKVV 246


>gi|315924326|ref|ZP_07920549.1| bifunctional S24 family peptidase/transcriptional regulator
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622397|gb|EFV02355.1| bifunctional S24 family peptidase/transcriptional regulator
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 246

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 70/237 (29%), Gaps = 35/237 (14%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I    ++  LT   L+ ++G+  ++ +K            P+ +++  +      ++
Sbjct: 13  LEKISEYKKKMRLTTKELSNRSGIPISTLSKLLTGESN----NPTLKNLQALANVFECSL 68

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS----------GVFPTGNKWNTVG 119
                L   D   +  + ++I  +           ++             P  +    V 
Sbjct: 69  NDFGALDTFDLSISNSEREQIRKIRKMDPYGRKAVNTLIDIEFERILQKEPNSDVARWVD 128

Query: 120 VPEIRSP--------------HNGIYAIQ--TQDTRHKTQDTSMLPLYRKGDILILNSAI 163
           +P                       +     + D   K    SM P +   + + ++   
Sbjct: 129 LPFQLLKASAGSGQFLDAENFEMRAFKNPPVSADFALKISGDSMEPKFSDEETVFVHQQP 188

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            +  G   +     G+   K +  +      L+SLN  Y    +        + +++
Sbjct: 189 DLEDGQIGIFVFN-GEGYIKQMDRKGHS---LISLNTKYDPILITGSDQFRIVGKVV 241


>gi|300173176|ref|YP_003772342.1| LexA repressor [Leuconostoc gasicomitatum LMG 18811]
 gi|299887555|emb|CBL91523.1| LexA repressor [Leuconostoc gasicomitatum LMG 18811]
          Length = 213

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 59/220 (26%), Gaps = 28/220 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              ++   I      +   P+   +    GL  +S      +R   +G         + K
Sbjct: 9   KQLQVLRFIHEAQITNGYPPTVREVGEAVGLSSSSTIHGHIERLVKKGY--------LLK 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             +       ++ D        +    + IP+L    +G+                   +
Sbjct: 61  DASKPRARAIEVTDSGLEALGVSITPGR-IPVLGLVTAGTPILAVE-----EEATEFFPI 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+                    +  SM+ +    GD +I+      + GD ++      +
Sbjct: 115 PDNLMQF------DGDMFMLNVRGNSMVNIGILDGDKVIVRKQDNADNGDVVVAMNDDNE 168

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K           L   N       ++   +  + +++
Sbjct: 169 ATVKRFFR-EADHFRLQPENDAMAPIILKS--VSILGKVI 205


>gi|322388682|ref|ZP_08062281.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC
           700779]
 gi|321140471|gb|EFX35977.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC
           700779]
          Length = 228

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 53/218 (24%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI-------L 62
           E +    +   +T   +A + G+   +++  +R   +         E I K+       L
Sbjct: 5   EKLKARRKELKMTQKDIADQLGVSYQAYSAWERGVKQPSREKVKLLEHILKVSKGYFTEL 64

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                      +             ++             +             +    +
Sbjct: 65  EIVRLYNTLSDEDKDQALNYVRSLVQKEKCKNVVSISEKLYEYHVYEKMSAGIGSSVYND 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y+ G + ++        G  +           
Sbjct: 125 QNYDTVYFDEELAHDFASWISGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNSQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           K +       + L+S+N  Y    +   +    +  I+
Sbjct: 184 KRVYREEHG-LRLVSINPNYKDIFLSYDEDPRIVGIIV 220


>gi|314953282|ref|ZP_07856213.1| repressor LexA [Enterococcus faecium TX0133A]
 gi|313594664|gb|EFR73509.1| repressor LexA [Enterococcus faecium TX0133A]
          Length = 210

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIFK 60
             ++   I     +    P+   +     L  TS       R   +G   R P+     +
Sbjct: 12  QIEVLRYIHEQVTQKGYPPTVREIGEAVQLSSTSTVHGHLARLEKKGFIQRDPTKPRAIE 71

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +                         EK        P          +    +  +   +
Sbjct: 72  LTKQ--------------------GLEKIGIRPTTIPVLGVVTAGEPILAVEDASDFFPI 111

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P   S        +        +  SM+      GD +I+        GD ++      +
Sbjct: 112 PPNLSSE------EGSLFMLTIRGDSMINAGILDGDNVIVRKQETAQNGDIVIAMTAEDE 165

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +     L   N       +    +  + R++
Sbjct: 166 ATCKRFYKEKN-FFRLQPENDLLEPIIL--DQVSILGRVV 202


>gi|297250710|ref|ZP_06864870.2| putative repressor protein [Neisseria polysaccharea ATCC 43768]
 gi|296838118|gb|EFH22056.1| putative repressor protein [Neisseria polysaccharea ATCC 43768]
          Length = 236

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    +     
Sbjct: 26  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 80

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132
             K+                            G     +        +            
Sbjct: 81  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 140

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N        D L +     +++ K L    G  
Sbjct: 141 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 199

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           I+++S N  YP   + +     D+E I R+ W
Sbjct: 200 INVISANEAYPTFEINLNDLTDDVEIIGRVEW 231


>gi|315652105|ref|ZP_07905103.1| LexA repressor [Eubacterium saburreum DSM 3986]
 gi|315485597|gb|EFU75981.1| LexA repressor [Eubacterium saburreum DSM 3986]
          Length = 202

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 61/224 (27%), Gaps = 33/224 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I+  I     +    PS   +    GL  TS   ++   +E +       
Sbjct: 1   MDTLTPKQEEIYNIIKDSILKKGYPPSVREIGELVGLKSTSSVHAQLNTLEKKGYIRKDP 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           S  + +  T++                         +   P          +    N  +
Sbjct: 61  SKPRTIEITDDEFNLTRRE-----------------VVNVPMVGTVAAGMPLLADENISD 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +P    P+             K +  SM+      GD +I+        GD ++   
Sbjct: 104 YFPIPTDFLPNT-------DIFMLKVKGESMINAGIYDGDQIIVAKQNTAKNGDIIVALI 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  K           L   N       V  +++  + +++
Sbjct: 157 -EDSATVKKFFK-ENNYYRLQPENDFMEPILV--NEVSILGKVI 196


>gi|260584011|ref|ZP_05851759.1| repressor protein LexA [Granulicatella elegans ATCC 700633]
 gi|260158637|gb|EEW93705.1| repressor protein LexA [Granulicatella elegans ATCC 700633]
          Length = 207

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 53/224 (23%), Gaps = 41/224 (18%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES 57
               +   I    + H   P+   +    GL  TS      ++ ++ G     R PS   
Sbjct: 8   KQIDVLRFIYEEVKEHGYPPTVREICNAVGLSSTSTVHGHLSRLEKNGYI--QRDPSKPR 65

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             ++                               L    + +      G    G+    
Sbjct: 66  AIEL---------------------------TQIGLKAIGATATAIPMLGTVSAGSPILA 98

Query: 118 VGVPEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
           +       P                 +  SM+      GD +I+      + G+ ++   
Sbjct: 99  IEEANGFFPIPPDLQQDAEDLFMLTIKGDSMINAGIFDGDSVIVRKQSTASNGEIVIAMT 158

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  K         I L   N       +    +  + +++
Sbjct: 159 EEDTATCKRFYRESD-HIRLEPENDQLDPIILPN--VTILGKVV 199


>gi|330960371|gb|EGH60631.1| LexA repressor [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 202

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 62/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E +  E  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEARPDESSLPVI-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +   + +   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AQQHIEESCNINPAFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ D
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187


>gi|77460093|ref|YP_349600.1| LexA repressor [Pseudomonas fluorescens Pf0-1]
 gi|77384096|gb|ABA75609.1| LexA repressor [Pseudomonas fluorescens Pf0-1]
          Length = 202

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 60/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E K  E  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEAKVDESTLPII-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AQQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V + D
Sbjct: 154 -GDEVTVKRFKRD-GSKVWLIAENPEFAPIEVNLKD 187


>gi|83749661|ref|ZP_00946642.1| LexA repressor [Ralstonia solanacearum UW551]
 gi|207723258|ref|YP_002253657.1| lexa repressor protein [Ralstonia solanacearum MolK2]
 gi|207743347|ref|YP_002259739.1| lexa repressor protein [Ralstonia solanacearum IPO1609]
 gi|83723663|gb|EAP70860.1| LexA repressor [Ralstonia solanacearum UW551]
 gi|206588456|emb|CAQ35419.1| lexa repressor protein [Ralstonia solanacearum MolK2]
 gi|206594744|emb|CAQ61671.1| lexa repressor protein [Ralstonia solanacearum IPO1609]
          Length = 216

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 23/216 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I +  +R    P  + +A + G    +                + E
Sbjct: 1   MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                 R T         L             G    G+   
Sbjct: 45  EHLRALARKGVIELTPGASRGIRLRATGDASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +        D   K +  SM       GD+L +  A +   G  ++ + 
Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRANEATNGKIVVAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K    + GR ++L++ N  +    V++  
Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFKPIHVDLDR 198


>gi|312868402|ref|ZP_07728602.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
           F0405]
 gi|311096147|gb|EFQ54391.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
           F0405]
          Length = 228

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 21/223 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   +T   +A + G+   +++  +R   +     PS E + ++    N    
Sbjct: 5   EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKQ-----PSREKVQQLEQILNVPKG 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPHNG 129
              +L  +        E +   L +    +       V P     +      ++ +    
Sbjct: 60  YFTELEIARLYNILSDEAKDQALSYVRGLAQKEKCKNVVPISEKLYEYHVYEQMSAGIGS 119

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                              D        SM P Y+ G + ++        G  +      
Sbjct: 120 SVYNDQNYDTVYFDEELPHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCN 178

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                K +       + L+S+N  Y    +   +    +  I+
Sbjct: 179 SRTYIKRVYREEHG-LRLVSINPNYKDIFLSYDEDPRIVGIIV 220


>gi|196037690|ref|ZP_03105001.1| helix-turn-helix domain protein [Bacillus cereus NVH0597-99]
 gi|196031932|gb|EDX70528.1| helix-turn-helix domain protein [Bacillus cereus NVH0597-99]
          Length = 250

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 63/245 (25%), Gaps = 33/245 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT    + I   I +  + +++T S LA + G+  ++ +    +  +     PS+  + K
Sbjct: 1   MTDLQKETIVTNIKKYLKENDMTQSELASQIGIARSTLSDYMNYRAK-----PSSGVLEK 55

Query: 61  ILAATNE------------------------TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           + A                            +    +    +   +     +   L    
Sbjct: 56  MAAVFGVTKADIDTTYKNKKAAIVDGVLQLVSEEGTMINGGTITSSLMTANQLGLLQTEK 115

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
              +      G    G     V     R           +         SM  +   G  
Sbjct: 116 MVSNPEIPVIGKIAAGTPIEAVQDIVDRIVPPYKTNNVDELFGLVVNGESMNKIVPNGHY 175

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMS---DI 212
            +L     V  G+   +         K +        ++  S +  +           DI
Sbjct: 176 AVLKKQPDVENGEIAAVIVNGHYATLKKVYKFTDLMVLEPCSHDESFKDQQFSRDNCEDI 235

Query: 213 EWIAR 217
           + I +
Sbjct: 236 KIIGK 240


>gi|257878187|ref|ZP_05657840.1| transcriptional repressor LexA [Enterococcus faecium 1,230,933]
 gi|257881031|ref|ZP_05660684.1| transcriptional repressor LexA [Enterococcus faecium 1,231,502]
 gi|257884691|ref|ZP_05664344.1| transcriptional repressor LexA [Enterococcus faecium 1,231,501]
 gi|257889615|ref|ZP_05669268.1| transcriptional repressor LexA [Enterococcus faecium 1,231,410]
 gi|260559232|ref|ZP_05831418.1| transcriptional repressor LexA [Enterococcus faecium C68]
 gi|261207766|ref|ZP_05922451.1| transcriptional repressor LexA [Enterococcus faecium TC 6]
 gi|293553450|ref|ZP_06674078.1| LexA repressor [Enterococcus faecium E1039]
 gi|293560339|ref|ZP_06676835.1| LexA repressor [Enterococcus faecium E1162]
 gi|294614044|ref|ZP_06693973.1| LexA repressor [Enterococcus faecium E1636]
 gi|294617209|ref|ZP_06696859.1| LexA repressor [Enterococcus faecium E1679]
 gi|294623185|ref|ZP_06702064.1| LexA repressor [Enterococcus faecium U0317]
 gi|314939164|ref|ZP_07846421.1| repressor LexA [Enterococcus faecium TX0133a04]
 gi|314943939|ref|ZP_07850650.1| repressor LexA [Enterococcus faecium TX0133C]
 gi|314948043|ref|ZP_07851446.1| repressor LexA [Enterococcus faecium TX0082]
 gi|314993373|ref|ZP_07858740.1| repressor LexA [Enterococcus faecium TX0133B]
 gi|314994959|ref|ZP_07860080.1| repressor LexA [Enterococcus faecium TX0133a01]
 gi|257812415|gb|EEV41173.1| transcriptional repressor LexA [Enterococcus faecium 1,230,933]
 gi|257816689|gb|EEV44017.1| transcriptional repressor LexA [Enterococcus faecium 1,231,502]
 gi|257820529|gb|EEV47677.1| transcriptional repressor LexA [Enterococcus faecium 1,231,501]
 gi|257825975|gb|EEV52601.1| transcriptional repressor LexA [Enterococcus faecium 1,231,410]
 gi|260074989|gb|EEW63305.1| transcriptional repressor LexA [Enterococcus faecium C68]
 gi|260078149|gb|EEW65855.1| transcriptional repressor LexA [Enterococcus faecium TC 6]
 gi|291593090|gb|EFF24670.1| LexA repressor [Enterococcus faecium E1636]
 gi|291596522|gb|EFF27765.1| LexA repressor [Enterococcus faecium E1679]
 gi|291597402|gb|EFF28574.1| LexA repressor [Enterococcus faecium U0317]
 gi|291602327|gb|EFF32551.1| LexA repressor [Enterococcus faecium E1039]
 gi|291605700|gb|EFF35138.1| LexA repressor [Enterococcus faecium E1162]
 gi|313590816|gb|EFR69661.1| repressor LexA [Enterococcus faecium TX0133a01]
 gi|313592157|gb|EFR71002.1| repressor LexA [Enterococcus faecium TX0133B]
 gi|313597423|gb|EFR76268.1| repressor LexA [Enterococcus faecium TX0133C]
 gi|313641544|gb|EFS06124.1| repressor LexA [Enterococcus faecium TX0133a04]
 gi|313645523|gb|EFS10103.1| repressor LexA [Enterococcus faecium TX0082]
          Length = 207

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 52/220 (23%), Gaps = 35/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIFK 60
             ++   I     +    P+   +     L  TS       R   +G   R P+     +
Sbjct: 9   QIEVLRYIHEQVTQKGYPPTVREIGEAVQLSSTSTVHGHLARLEKKGFIQRDPTKPRAIE 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +                         EK        P          +    +  +   +
Sbjct: 69  LTKQ--------------------GLEKIGIRPTTIPVLGVVTAGEPILAVEDASDFFPI 108

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P   S        +        +  SM+      GD +I+        GD ++      +
Sbjct: 109 PPNLSSE------EGSLFMLTIRGDSMINAGILDGDNVIVRKQETAQNGDIVIAMTAEDE 162

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +     L   N       +    +  + R++
Sbjct: 163 ATCKRFYKEKN-FFRLQPENDLLEPIIL--DQVSILGRVV 199


>gi|46019830|emb|CAE52354.1| putative transcriptional regulator [Streptococcus thermophilus]
          Length = 228

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 52/218 (23%), Gaps = 11/218 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKI-------L 62
           E +    +   LT   +A + G+   +++  +R   E  + +    E I K+       +
Sbjct: 5   EKLKARRKELKLTQKNIADQLGISYQAYSAWERGVKEPSKEKVKRLEQILKVPRGYFTEI 64

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                                    ++             +                   
Sbjct: 65  EIVRLYNTLSNKGKNQVVEYARDLVQKEKTQQVISVSENLYEYHVYEKMSAGIGASVYDN 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P Y  G + ++        G  +           
Sbjct: 125 RNYDTVYFNEELAHDFASWVSGDSMEPKYHNGSVALIRETGFDYDG-AVYAVVWNSQTFI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           K +       + L+S+N  Y    +   +    + +I+
Sbjct: 184 KKVYREEEG-LRLVSINKAYKDIHIPYDENPRIVGKIV 220


>gi|329298588|ref|ZP_08255924.1| LexA repressor [Plautia stali symbiont]
          Length = 211

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 71/217 (32%), Gaps = 14/217 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               +   E I +  +   LT   LA   G+   + ++ ++         P  + + ++ 
Sbjct: 1   MMKKESGGERIRQRRKALKLTQQALANGIGVSHVAVSQWEKEETV-----PRGKHLLRLA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                +   ++D       +T        +       +  + +         W    V  
Sbjct: 56  ELLQCSAAWIIDGDGQPFASTHASPALTAVPLVTLVQAADWLNKQRLQ----WQQQAVRF 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           + S       +         +D +M P YR GD LI +       GD +++       + 
Sbjct: 112 LYSDKP----LSDSALAVTLEDDAMNPAYRAGDRLIFDPQHVPQPGD-VVLARVDEVAMV 166

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +++     +   L  LN  +PV   + S +E I  ++
Sbjct: 167 RIIRMHDEQIFSLRPLNEDFPVQQSQKSALELIGTLV 203


>gi|24379803|ref|NP_721758.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gi|24377771|gb|AAN59064.1|AE014973_4 putative transcriptional regulator [Streptococcus mutans UA159]
          Length = 284

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E +        I   D        SM PL+  GD++ +     ++ G  +++     +  
Sbjct: 187 EKQETIKYPIPIPEHDIALIVNGNSMEPLFYNGDVIFVKKTKAIHHGQIIVVIVN-NEAY 245

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            K L  +  + I L+SLN  Y    ++  D IE I  ++
Sbjct: 246 VKKLYRK-NKEIRLISLNPDYDDIILKEDDTIEVIGTVI 283



 Score = 42.1 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 44/162 (27%), Gaps = 6/162 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I   + R+     +  S LA    +  +S N+  +         P   +I KI     
Sbjct: 2   KAISANLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKS-----LPKIGNIQKIADYFG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                +     S   ++   +                 D     +  +  T  +      
Sbjct: 57  LQKSDIDPRFASKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDET 116

Query: 127 HNGIYAIQTQDT-RHKTQDTSMLPLYRKGDILILNSAIQVNC 167
                A ++  T   K  D+ +        I+  ++ I+   
Sbjct: 117 TEDKVADKSNHTQYQKVVDSFIAKELNDQTIIHWDNVIKAKD 158


>gi|302389741|ref|YP_003825562.1| SOS-response transcriptional repressor, LexA [Thermosediminibacter
           oceani DSM 16646]
 gi|302200369|gb|ADL07939.1| SOS-response transcriptional repressor, LexA [Thermosediminibacter
           oceani DSM 16646]
          Length = 201

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 33/217 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            K+I + I     +    PS   +     L  T+                   ++   L 
Sbjct: 9   QKQILDYIYDFLNKRGYPPSVREICSATNLKSTA-------------------TVHSYLV 49

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
              +      D           K+     +   P          +    N      +P+ 
Sbjct: 50  QLEKKGYISRDPQKPRAIVVMDKKTLGKDIVPVPLVGKVTAGQPMLAEENIQGVFSLPKE 109

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P        ++    K Q  SM+      GD +I+        GD ++      +   
Sbjct: 110 MVP-------DSEVFMLKVQGDSMIDAGIFDGDYVIVKVTSTAENGDIVVAL-LGDEATV 161

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K     +   I L   N       V+  D++ + +++
Sbjct: 162 KRFFKEKD-HIRLQPENQYMEPIIVK--DVKILGKVI 195


>gi|257784356|ref|YP_003179573.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
           20469]
 gi|257472863|gb|ACV50982.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
           20469]
          Length = 210

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 27/217 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I    +  N+T + LA K G    +  + +   +  R      + + ++    N ++  L
Sbjct: 5   IAEARKLRNITQAELAEKMGTTQQTVQRYETNQVNIR-----MDKMIEMSEILNVSLAYL 59

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L +  S   +       +PLL             G    G     + V E       I+ 
Sbjct: 60  LGMSSSPEISEVSDMAPVPLL-------------GSIAAGTPIEMISVDETYDIPADIHE 106

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGR 191
              Q    K    SM  +   G   ++N   +     +       G D   K +      
Sbjct: 107 RYPQAFLLKVVGESMNRVLPNGCYALINPCKEEIKPMKAYAVCVNGFDATIKRVKPLSNG 166

Query: 192 SIDLMSLN--CCYPVDTVEMSDIE-----WIARILWA 221
             +L+  +    +     + ++I+      I  ++W 
Sbjct: 167 -YELIPDSIDPTFRPQIFDFNEIDTQPISIIGEVIWY 202


>gi|91214040|ref|YP_544026.1| putative regulatory protein [Escherichia coli UTI89]
 gi|117626694|ref|YP_860017.1| putative regulatory protein [Escherichia coli APEC O1]
 gi|218561557|ref|YP_002394470.1| transcriptional regulator from phage origin [Escherichia coli S88]
 gi|300925249|ref|ZP_07141146.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
 gi|307139345|ref|ZP_07498701.1| putative transcriptional regulator from phage origin [Escherichia
           coli H736]
 gi|331643341|ref|ZP_08344472.1| regulatory protein [Escherichia coli H736]
 gi|91075614|gb|ABE10495.1| putative regulatory protein [Escherichia coli UTI89]
 gi|115515818|gb|ABJ03893.1| putative regulatory protein [Escherichia coli APEC O1]
 gi|218368326|emb|CAR06145.1| putative transcriptional regulator from phage origin [Escherichia
           coli S88]
 gi|300418618|gb|EFK01929.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
 gi|331036812|gb|EGI09036.1| regulatory protein [Escherichia coli H736]
          Length = 230

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 75/227 (33%), Gaps = 17/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  N+  + LA   G+D  + ++ +     G+ +  + +++  I  +   
Sbjct: 2   NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57

Query: 68  TICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            I  L    F          +E   +   +             +G+   G+  + +   E
Sbjct: 58  DIADLFTSDFKSNTVCKNSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117

Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            R+ +                  +  SM P    GD++ ++ +I    GD + +      
Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           I  K L       + ++S N  Y    +            ++L  SQ
Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222


>gi|147668729|ref|YP_001213547.1| phage repressor like transcriptional regulator [Dehalococcoides sp.
           BAV1]
 gi|146269677|gb|ABQ16669.1| phage repressor like transcriptional regulator, XRE family
           [Dehalococcoides sp. BAV1]
          Length = 207

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 11/189 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + ++     +T + LA  +GL     +  +      ++  PS E++ KI  A   
Sbjct: 4   QIGLKVKQLRIARGMTQAKLADASGLTRGYISMLELR----KSTMPSYEALSKIARALGV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            I +    P      + ++      L  P S          F        +   E     
Sbjct: 60  DIKEFKTDPEIVRLESPEEVLRKYQLMAPVS----IPVYDHFYVHAGDAALAPIEYIYRA 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              +A       +K +   M P+  +GDIL+++       G+ LL     G+++   LI 
Sbjct: 116 RESFA-PQNIEAYKVRGNCMEPVISEGDILLIDRDRTPQKGNILLCVVD-GEVIVGKLIE 173

Query: 188 RRGRSIDLM 196
           +    + L 
Sbjct: 174 Q-NGVLYLK 181


>gi|227534620|ref|ZP_03964669.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187721|gb|EEI67788.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 277

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 68/278 (24%), Gaps = 66/278 (23%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + S   +   I  + ++  +T + L+R  G+   + +  +        R     SI K
Sbjct: 1   MPNKSANILGPVIKELRKQKKMTQADLSRITGIAQNTISNHENQN-----RALDENSIIK 55

Query: 61  ILAATNETICQLL----------------------------------------------- 73
              A   T   L                                                
Sbjct: 56  YAKALGVTPQALYDAAIVKKSIDTKSMVIDVRQTAIDEINDVVKELVTPRVQKVASYAEK 115

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIY 131
            L             E  +              G+   G     +    P          
Sbjct: 116 QLNEQQSPDNVVSLDEARVERNLDEPEFNVEVDGIVAAGYGAFNDDRNEPMDTVKIPDSA 175

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
                D   K    SM P Y  G+++ +     V  G   ++         K LI     
Sbjct: 176 IPSHYDYCFKVVGDSMHPTYDDGELVFVQKTQDVTNGMIAVVDID-DMTFIKKLIFEEN- 233

Query: 192 SIDLMSLNCC---------YPVDTVEMSD-IEWIARIL 219
            + L SLN           YP    + +D IE I +++
Sbjct: 234 RLCLRSLNDDVDEETGERIYPDFYADDTDNIEVIGKVV 271


>gi|290968534|ref|ZP_06560073.1| repressor LexA [Megasphaera genomosp. type_1 str. 28L]
 gi|290781530|gb|EFD94119.1| repressor LexA [Megasphaera genomosp. type_1 str. 28L]
          Length = 205

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 57/219 (26%), Gaps = 36/219 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            ++I E I     ++   PS   + ++ GL  TS   +  +    +G  R          
Sbjct: 12  QRQILEYIRACVHQYGYPPSVREICQEVGLSSTSTVHSYLQALEEKGYIR---------- 61

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                               T  +    +    +           G    G         
Sbjct: 62  -----------------RNPTKNRNIALVDEGNWRSKKLVPLPLVGQVRAGEPIFAEECV 104

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E   P    +           +  SM      +GD+LI+        G+ ++      + 
Sbjct: 105 EDVYPFAADFIGDDDAFLLTVRGDSMKNAGILEGDLLIVRRQNTAQNGEIVVAL-LEEEA 163

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K       ++I L   N  Y          + + +++
Sbjct: 164 TVKRYFRES-QAIRLQPENEAYEPIY--TRHCQILGKVV 199


>gi|52842310|ref|YP_096109.1| prophage repressor CI-like [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629421|gb|AAU28162.1| hypothetical prophage repressor CI-like [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 234

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 13/209 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +KI + I        LT   L      L  +  +  +R      +R P  E I ++  A 
Sbjct: 13  EKIGQRIQEERIAKGLTRKALEELTDDLKQSRISNWERG-----DRTPGPEEIKQLARAL 67

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + +   L+ L              +  L                   +  + +    I S
Sbjct: 68  DISPAYLMCLTDEKRPKKIPGLGSLVPLLDHQQACDPKGFIQRVRNEHNSDEISFIPISS 127

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKV 184
             +    +       K +D SM P  R  DILI++   +++ G  +        +++ + 
Sbjct: 128 ELSTR--LGENAFALKMKDESMHPELRVNDILIIDPNSELHPGSLVAAQLNEENEVIVRR 185

Query: 185 LISRRGRS----IDLMSLNCCYPVDTVEM 209
                        +L + N  +    ++ 
Sbjct: 186 YKQLTLSKEFNPFELRAENDNWGNIKIDK 214


>gi|332363975|gb|EGJ41754.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK355]
          Length = 225

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSALYTYPLLTPPHKKEVDKLASRLLERQRKVSSLTAYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYGDLFAPYEDQPSIVGIVV 217


>gi|297622579|ref|YP_003704013.1| transcriptional repressor, LexA family [Truepera radiovictrix DSM
           17093]
 gi|297163759|gb|ADI13470.1| transcriptional repressor, LexA family [Truepera radiovictrix DSM
           17093]
          Length = 204

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 8/172 (4%)

Query: 49  RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFF 104
           + R   +  +       N     L     +  R        + +        P+ + G  
Sbjct: 19  KERTGRSPELSVFARDLNIHYVSLRQHLEALHRKGYVIFESRGRGQSPRLELPARATGVP 78

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
             G  P G     +  PE   P  G      Q    +    SM  L + GDI++    + 
Sbjct: 79  VLGSIPAGPLSEALAEPEGFLPLTGA----RQQFALRVSGDSMADLIQDGDIVLFRKGMP 134

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              G+   ++    ++  K +     +++ L   N  YP   V  +++    
Sbjct: 135 TRSGEICAVRVGNSEVTLKYVDHHEPQTVTLRPHNPQYPTVAVPATEVHIEG 186


>gi|218886195|ref|YP_002435516.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757149|gb|ACL08048.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 249

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 57/235 (24%), Gaps = 34/235 (14%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT------- 65
           ID +     +    LA  AG+   +    K        R+PS  ++ ++           
Sbjct: 19  IDALHSVGGV--KRLAEIAGVSERTVYAWKNGE-----RFPSRTNLARLTEHLDRIPAVS 71

Query: 66  -------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT- 117
                        L     +   +  + E    +                   G      
Sbjct: 72  GLQPHRRGLHERMLRPYGEAPRASAGQPEVPEEVRRLAEEFVLVDRAEARPSAGGGSLQT 131

Query: 118 -----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
                           G     T     +    SM      GD++++N        DR+ 
Sbjct: 132 GGHPQEQHAFRLDWVLGRARSTTGLCLMEVMGRSMERTLHDGDLVLVNQHDHALAEDRIY 191

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMSD----IEWIARILWA 221
           +     +I  K               N    Y    ++  D     E I R++WA
Sbjct: 192 VVRVQDEIYIKRFSR-TPGRYHFRGDNPEFAYQDIEIDPRDEALQWEVIGRVIWA 245


>gi|330961042|gb|EGH61302.1| repressor protein c2 [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 203

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 67/213 (31%), Gaps = 28/213 (13%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET------IC 70
            E   ++   +A + G+ P +             R P  E I + L              
Sbjct: 1   METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILATSIPW 55

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           Q   +          +    P++ +  +G         +P G   +T  + +        
Sbjct: 56  QESAMDNVAPAVQPSRFYRYPVISWVEAGGWSEAVE-PYPAGY-SDTFEISD-------- 105

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
           Y  + +      +  SM         +G ++++++ ++   G  ++   P + +   K L
Sbjct: 106 YKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGLEPTAGKLVIAKLPESNEATFKKL 165

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +        L  LN  YP   V   D + I  I
Sbjct: 166 VED-AGRFFLKPLNPAYPTLPVT-EDCKLIGVI 196


>gi|227510233|ref|ZP_03940282.1| LexA repressor [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227513162|ref|ZP_03943211.1| LexA repressor [Lactobacillus buchneri ATCC 11577]
 gi|227524377|ref|ZP_03954426.1| LexA repressor [Lactobacillus hilgardii ATCC 8290]
 gi|227083543|gb|EEI18855.1| LexA repressor [Lactobacillus buchneri ATCC 11577]
 gi|227088608|gb|EEI23920.1| LexA repressor [Lactobacillus hilgardii ATCC 8290]
 gi|227189885|gb|EEI69952.1| LexA repressor [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 209

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 53/223 (23%), Gaps = 37/223 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES 57
              KI   I          P+   +     L  TS      N+ ++ G   +   PS   
Sbjct: 8   KQYKILHYIWEKVNDKGYPPTVREIGEAVNLSSTSTVHGHINRLQKKGYIVK--DPSKPR 65

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             ++                       +     P     P          +    +  + 
Sbjct: 66  ALEV------------------TAAGMELLGIAPKQKQIPILGTVTAGEPILAVEDATDY 107

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P   +               + +  SM+      GD +++      + GD ++    
Sbjct: 108 FPLPPQLAQD------DQTLFMLQIRGESMINAGILNGDYVVVRKQAYADNGDIVIAMTD 161

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K           L   N       +    +  + +++
Sbjct: 162 ENEATCKRFFKESD-HFRLQPENDTMAPIILTK--VSILGKVV 201


>gi|125717479|ref|YP_001034612.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36]
 gi|125497396|gb|ABN44062.1| Transcriptional regulator (XRE family), SOS-response
           transcriptional repressors (RecA-mediated
           autopeptidases), putative [Streptococcus sanguinis SK36]
          Length = 225

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT S + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
             +        L          +K+      + +       S +     S     G   +
Sbjct: 57  QESYFVDETSALYTYPLLTLPHKKEVDQLASRLLERQRKISSLTAYKVLSVELAAGLGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|330878374|gb|EGH12523.1| repressor protein c2 [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330963865|gb|EGH64125.1| repressor protein c2 [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 203

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   +A + G+ P +             R P  E I ++L      I       
Sbjct: 1   METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRLLGELGLPILATSIPS 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134
              G        +    Y  P  S                    P   S    I  Y  +
Sbjct: 56  SEPGMHNVAPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109

Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189
            +      +  SM         +G ++++++ I+   G  ++   P + +   K L+   
Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                L  LN  YP   V   D + I  I
Sbjct: 169 AGRYFLKPLNPAYPTLPVT-EDCKLIGVI 196


>gi|169830931|ref|YP_001716913.1| SOS-response transcriptional repressor, LexA [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637775|gb|ACA59281.1| SOS-response transcriptional repressor, LexA [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 196

 Score = 84.8 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 53/217 (24%), Gaps = 41/217 (18%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRNRWPSTESIFKILA 63
           +I + I +  E     PS   + +  GL  P +  +  +R    G  R   T S      
Sbjct: 9   QILDCILKHLEDKGYPPSVREIGKATGLRSPATVLSYLRRLEDRGFLRRDQTASRA---- 64

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                       +   P   +      G    G     V   E 
Sbjct: 65  ----------------------------VSVGPRLRAVAVPLLGRIAAGQPHPAVEYRED 96

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                       +    + +  SM       GD++++        GD +      G+   
Sbjct: 97  VLLLPAELTGSGECFALRVRGESMVEAGILDGDLVVVRRQPTAENGDIVAAL-VAGEATV 155

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K         I L   N           +   + +++
Sbjct: 156 KRFYR-EDGRIRLQPENRTMRPIF--TDEAAILGKVV 189


>gi|326574451|gb|EGE24393.1| peptidase S24-like protein [Moraxella catarrhalis 101P30B1]
          Length = 233

 Score = 84.8 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 69/229 (30%), Gaps = 16/229 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   +    +   LT   +  +  GL  +++++ +    +   R      +F +     
Sbjct: 2   ELKNRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAVELAHLFGV-DVHW 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-------WNTVG 119
               +      +D  T   +  +   L         F+    F  G           T  
Sbjct: 61  LISGEGEMTKNNDKLTPITEWDDSTPLDDDEV-GIPFYKDIAFACGYGAVNDDVTHETRK 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +   +   + +  +         +D SM P  + GD + +++  +     R+        
Sbjct: 120 LRMGKRTLSNLGVMSENAFAVTARDDSMTPYVQDGDTIYIDTGRKEIKDGRIFAIRFGEL 179

Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
            + K L       + ++S N   +P        +   + E I  +   S
Sbjct: 180 CLCKRLYRLPDGGVRIVSDNAAEFPEQIATKQQISDGEFEVIGWVWSVS 228


>gi|326318306|ref|YP_004235978.1| putative phage repressor [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323375142|gb|ADX47411.1| putative phage repressor [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 227

 Score = 84.8 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 66/227 (29%), Gaps = 18/227 (7%)

Query: 6   HKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           H+         +E  ++T  S +AR  G  P +    +        R  S     K    
Sbjct: 2   HESALRLYQAASELKDVTGQSAVARLLGESPQNIKNWE-------MRGVSKAGALKAEEL 54

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---- 120
              +   LL           +  +   +            ++     G++     V    
Sbjct: 55  IGCSAAWLLTGDRQPAPAHRRPAQPAAVTTSGSVTVPQLANAASMGAGSEMAHEDVMVGR 114

Query: 121 ----PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
               P          +             SM P +  GD+L++++ ++    D + +   
Sbjct: 115 LTLSPTWIGRTLRGLSTPENLRFIHAYGDSMEPTFLDGDVLLVDAGVRTVEVDGVYVLGA 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARILWA 221
              +  K +  R   + ++ S N       V      +E + +++W 
Sbjct: 175 QNRLFIKRVRQRLDGAYEISSDNPTVKTVDVLDGKHTVEILGKVIWI 221


>gi|241662841|ref|YP_002981201.1| LexA repressor [Ralstonia pickettii 12D]
 gi|240864868|gb|ACS62529.1| SOS-response transcriptional repressor, LexA [Ralstonia pickettii
           12D]
          Length = 216

 Score = 84.8 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 66/216 (30%), Gaps = 23/216 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I +  +R    P  + +A + G    +                + E
Sbjct: 1   MATLTPRQQQIYDLIRQTTQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                 R   +  +    L             G    G+   
Sbjct: 45  EHLRALARKGVIELTPGASRGIRLRAAGETAQHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +        D   K +  SM       GD+L +  A +   G  ++ + 
Sbjct: 105 AAEHIDRQYQVDPSLFSAQPDFLLKVRGMSMRDAGILDGDLLAVQRASEAPNGKIVVAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K    + GR ++L++ N  +    V++  
Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198


>gi|260578879|ref|ZP_05846785.1| LexA repressor [Corynebacterium jeikeium ATCC 43734]
 gi|258603026|gb|EEW16297.1| LexA repressor [Corynebacterium jeikeium ATCC 43734]
          Length = 267

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 52/220 (23%), Gaps = 11/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I E I          PS   +A   GL  TS        +E R          + + 
Sbjct: 45  QRRILEVIRDSTIIRGYPPSIREIADAVGLHSTSSVSYHLTQLEKRGYLRRDGKRPRAVD 104

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----VFPTGNKWNTVG 119
                  QL +        + +              +               G       
Sbjct: 105 VRAFDGGQLTNESTKKNAGSPQPTSAAIPEPTTEGETMPEATYVPVVGQIAAGAPILAEQ 164

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E   P         +    +    SM       GD +++ S      GD +      G
Sbjct: 165 NVEAHFPLPQELVGNGELFLLQVVGESMHDAGIFNGDWVVVRSQSVAEFGDFVAAMID-G 223

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +   K         + L+  N  +        +   + ++
Sbjct: 224 EATVKEFQKDADG-LWLIPHNPLFEPI--PAEEATILGKV 260


>gi|72162551|ref|YP_290208.1| peptidase S24, LexA repressor [Thermobifida fusca YX]
 gi|123733498|sp|Q47MY4|LEXA_THEFY RecName: Full=LexA repressor
 gi|71916283|gb|AAZ56185.1| peptidase S24, LexA repressor [Thermobifida fusca YX]
          Length = 252

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 22/223 (9%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
            + + ++  +   I R        PS   +    GL   S    +   ++ +      ++
Sbjct: 41  PTLTERQRSVLNVIHRYVRERGYPPSIREIGEAVGLSSPSSVAHQLKVLQRKGYLHRDQN 100

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             + +                 G +  ++  +IPLL    +G             +  + 
Sbjct: 101 RPRAVEIRIPHKTSGRTRRELGGLSGSEEIVDIPLLGRIAAGGPI------LAEEHVEDV 154

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           + +P            +           SM+      GD++++      N GD +     
Sbjct: 155 LSLPRQLVG-------EGTLFMLTVVGDSMIDAAIADGDLVVVRQQPDANNGDIVAAL-L 206

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   KV    R   + L+  N  Y            + +++
Sbjct: 207 GDEATVKVFKRDR-EHVWLLPRNSAYDPI--NGDSATILGKVV 246


>gi|291550381|emb|CBL26643.1| SOS-response transcriptional repressor, LexA [Ruminococcus torques
           L2-14]
          Length = 204

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 57/221 (25%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             K+I E I          P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQKEILEYIKDQILTRGFPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL        + +                       P          +    N  +   
Sbjct: 69  EILDDNFNLTRREMVN--------------------IPIIGRVAAGEPLLAEQNIEDYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         Y    Q    + Q  SM+      GD +I+        G++++      
Sbjct: 109 IPVE-------YMPNKQTFMLQVQGESMINAGILSGDYVIVEQTPSAENGEQVVALI-ED 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K         I L   N  Y    +   D+  + +++
Sbjct: 161 GATVKTFYREE-GIIRLQPENDAYDPIILT--DVTILGKVI 198


>gi|237738942|ref|ZP_04569423.1| LexA repressor [Fusobacterium sp. 2_1_31]
 gi|229423542|gb|EEO38589.1| LexA repressor [Fusobacterium sp. 2_1_31]
          Length = 219

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 70/215 (32%), Gaps = 13/215 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + ++  +H  +  GLA+K  L  T  +K ++          S   I +I+    +  
Sbjct: 4   GTTLKKIRLKHKDSLRGLAKKINLHFTFVDKVEKGTAP-----ISNNFIERIVEVYPDEE 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP-HN 128
             L      +    +   K+  +     S        G    G  +  +  P+   P   
Sbjct: 59  KILKKEYLKENLP-KVFSKDESIKILEDSEVLNLPVYGKASAGRGYLNMDKPDYYMPITK 117

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL-IS 187
           G +++       +    SM P    G+  +++        +++ +     +   K + + 
Sbjct: 118 GDFSL--NSFFVEITGNSMEPTLEDGEYALVDPNNTAYVKNKIYVVTYNDEGYIKRVEVK 175

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
            + + I L S N  Y    +        +   R++
Sbjct: 176 DKKKVITLKSDNPDYDDIDISEEMQEYFKINGRVV 210


>gi|212703266|ref|ZP_03311394.1| hypothetical protein DESPIG_01308 [Desulfovibrio piger ATCC 29098]
 gi|212673310|gb|EEB33793.1| hypothetical protein DESPIG_01308 [Desulfovibrio piger ATCC 29098]
          Length = 227

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 12/229 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKI 61
             S   +   I  +  +   T   LA+ A ++  + +   +   + + R   T +S +KI
Sbjct: 1   MESGNYLRSIIAGLKGKKFETYRDLAQMANVNQGNLSSFMKPDGDPKRRETMTFDSAWKI 60

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L A    +  L     +  R       E        +    +  +G  P  +      + 
Sbjct: 61  LNALGLKLPTLEQQEATIRRPAPNAPVERADADGSVAI-HVYALAGAGPAFDLEENDPLA 119

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDI 180
            IR P        +       +  SM    + G ++ ++        G+   ++     +
Sbjct: 120 TIRVPLEYAMQCDS---ALLVKGDSMAWTIKSGGVVGVIRRNFDFVSGEVYAVRLPYEGL 176

Query: 181 VAKVLISRRG-RSIDLMSLNCC---YPVDTVEMSDIE--WIARILWASQ 223
             K +I         + S N     YP   + +++     + R++W  Q
Sbjct: 177 SIKRVIVDAASGEYIIRSDNPDKEKYPDRRLSITEYADIILGRVVWVWQ 225


>gi|160943854|ref|ZP_02091085.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445028|gb|EDP22031.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103055|emb|CBL00599.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Faecalibacterium prausnitzii SL3/3]
          Length = 206

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 29/224 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M+  S       +    E+  L+   LAR+ G    +S  K ++   +        E + 
Sbjct: 1   MSDLS-----TRVRLRREQLGLSQEELARRMGYRSRSSITKLEKGINDLPQS--KVEELA 53

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + L  T   +  L            +    +  +    S + G   +      N    +G
Sbjct: 54  QALETTPAALLGLDAPCA--CPPGFEPLPTMVQVPLIGSIACGTPIT---AEQNIECYIG 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           VP               D        SM P    GDI+ +    +V  G+   ++    +
Sbjct: 109 VPAAWHA----------DFALTCHGDSMSPTICNGDIVCIRCQPEVEQGEIAAVR-VGEE 157

Query: 180 IVAKVLISRRGRSIDLMSLNCCY-PVDTV---EMSDIEWIARIL 219
              K    + G ++ L++ N    P       ++S++    + +
Sbjct: 158 ATLKHFHRQ-GDAVMLLADNAAVCPPMFYAGEQLSELHIEGKAV 200


>gi|239623856|ref|ZP_04666887.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521887|gb|EEQ61753.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 204

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 56/221 (25%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I E I     +    P+   +     L  TS   S    +E +    R P+     
Sbjct: 9   KQQEILEYIKETILKKGYPPAVREICEAVHLKSTSSVHSHLSALEEKGFIRRDPTKPRTI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL  T     + +                       P          +       +   
Sbjct: 69  EILDDTFNFNRREMVN--------------------IPLIGTVAAGEPILAEERIEDYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
            P    P+        +    K +  SM+      GD LI+        G+ ++      
Sbjct: 109 FPAEALPN-------AETFMLKVKGESMIGAGILPGDQLIIEQCPTALNGEIVVALVD-D 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K     +     L   N            +E + +++
Sbjct: 161 SATVKRFYKEK-GHYRLQPENEAMDPII--TDHVEILGKVI 198


>gi|212696814|ref|ZP_03304942.1| hypothetical protein ANHYDRO_01377 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676104|gb|EEB35711.1| hypothetical protein ANHYDRO_01377 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 217

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 20/220 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I     +   T   + +K G+   +  + +   I+        E +   L  T  
Sbjct: 2   KLADRIKYKRNQLGKTLEEVGQKVGVTKATIQRYENGNIQNIPSD-KIELLAAALNTTPA 60

Query: 68  TICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            +    D    +      +       +  +   P          V    N          
Sbjct: 61  YLMGWEDDKDKEKDKIDLSNIPGVIPVKKIIKIPILGHIQCGKPVMSVENYEGYFTADPE 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                        D        SM+     +GD++      QV  G    +         
Sbjct: 121 MIN---------SDFCLYADGDSMIDAGIHEGDLVFFKQTPQVENGSIAAVFID-DTTTL 170

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
           K    +  + I L   N  Y    + + +   I  +  ++
Sbjct: 171 KRFYKKENQ-IILQPENKSYSPIIINLDESTNIRILGEMV 209


>gi|116492636|ref|YP_804371.1| XRE family transcriptional regulator [Pediococcus pentosaceus ATCC
           25745]
 gi|122265900|sp|Q03FU3|LEXA_PEDPA RecName: Full=LexA repressor
 gi|116102786|gb|ABJ67929.1| Transcriptional regulator, xre family [Pediococcus pentosaceus ATCC
           25745]
          Length = 209

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 52/220 (23%), Gaps = 39/220 (17%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKS-KRFGIEGRNRWPSTESIFK 60
           + E I +        P+   +    GL  TS      ++  K   +E     P    + K
Sbjct: 12  VLEYIYKTVNAQGYPPTVREIGSAIGLSSTSTVHGHIDRLQKNGFLEKDPTKPRALEVTK 71

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +                                   P          +       +   V
Sbjct: 72  L---------------------GLDALGVQDKNPTIPLLGVVTAGEPILAVEEATDFFPV 110

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P      +      +       +  SM+      GD +I+      + G  ++      +
Sbjct: 111 PPEYENDS------SNLFMLTIRGESMINAGILSGDQVIVRKQSTADNGTIVIAMTDENE 164

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I L   N       ++   +  + +++
Sbjct: 165 ATCKRFYRESD-HIRLQPENDTMAPIILDN--VTILGKVV 201


>gi|225155121|ref|ZP_03723616.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidase)-like protein [Opitutaceae bacterium TAV2]
 gi|224804068|gb|EEG22296.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidase)-like protein [Opitutaceae bacterium TAV2]
          Length = 215

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 17/213 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATNET 68
            + +    E   LT   L ++ G       K +              E++ + L  TN  
Sbjct: 7   GKQLKEWRESAGLTQEELGQRLGYTREWIGKLESNDRPISANIHLKLETLKRELEFTNRG 66

Query: 69  I-CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              +            +   +EIP++ +                G   +   +P      
Sbjct: 67  ELRENPAPYGVGHPLRDLAPREIPVISWAH-------------AGEAVSYEEIPRDWQNT 113

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                          +  SMLP +R GD++++   ++      ++ K +   +V K+L +
Sbjct: 114 IYTSCATPHAFAITVEGDSMLPDFRPGDVVVVMPEVEPRNHCPVVAKLKNDGVVLKILNA 173

Query: 188 RRG--RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                R+I L S+N  Y   T    D  WI  +
Sbjct: 174 SGPEKRTIVLTSINPVYQPLTYTPEDFHWIWPV 206


>gi|330984863|gb|EGH82966.1| repressor protein c2 [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 218

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I +AI        +    +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRQERIAKAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121
            AT      L           E        L   P+ S  +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 109

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209


>gi|326796048|ref|YP_004313868.1| phage repressor [Marinomonas mediterranea MMB-1]
 gi|326546812|gb|ADZ92032.1| putative phage repressor [Marinomonas mediterranea MMB-1]
          Length = 236

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 59/236 (25%), Gaps = 36/236 (15%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +ID          + LA+K G    + NK            P  E +  I A T    
Sbjct: 11  LHSIDIQRHGAG---AWLAKKTGTTVKAANKWLNGES-----HPRREKVETIAALTKVRT 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-------- 121
             L            ++ K    L  P +       +      +   ++ +P        
Sbjct: 63  EWLEYGTGL-----MRETKSHMQLNEPLADYTVSSIAQPSRAHHSTQSIELPYLKESELT 117

Query: 122 ------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                          S                    SM P+     ++ +++        
Sbjct: 118 TTQRPTSSEAMIFNASLLEHAGIEPANALAFSLSGDSMAPVLPNNALVAVDTEDTSITDG 177

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWAS 222
           ++        +  + L      ++ + S N     + +    +     I R+ W S
Sbjct: 178 KIYAFVHGELLRVRYLYRLPYGALSVRSSNPAIEDEALTKDQVDNIRIIGRVFWYS 233


>gi|325570326|ref|ZP_08146164.1| transcriptional repressor LexA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156696|gb|EGC68871.1| transcriptional repressor LexA [Enterococcus casseliflavus ATCC
           12755]
          Length = 209

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 57/222 (25%), Gaps = 39/222 (17%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESI 58
             +I + I          P+   +     L  TS      ++ ++ G+    R P+    
Sbjct: 12  QIEILKFIHTRVTEKGYPPTVREIGEAVQLSSTSTVHGHLSRLEKKGLI--LRDPTKPRA 69

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            ++                    T+   EK        P          +    +  +  
Sbjct: 70  IEL--------------------TSSGLEKIDVQPASIPMLGVVTAGEPILAVEDASDFF 109

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P   +                 +  SM+      GD +I+        GD ++     
Sbjct: 110 PIPPDLANST------GSLFMLTIRGESMINAGILDGDQVIVRKQQSAQNGDIVIAMTDE 163

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K     +   I L   N       +   D+  +  ++
Sbjct: 164 DEATCKRFYKEKN-YIRLQPENDYLEPIILP--DVTILGLVV 202


>gi|222054633|ref|YP_002536995.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221563922|gb|ACM19894.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 209

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 69/212 (32%), Gaps = 19/212 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I  + +  ++T    A   G+     +  +R       +  S   I  +  +   
Sbjct: 9   RMGLRIKEIRQAKDMTQKEFADSLGIVQGFLSGVERG-----KKNVSDTLIIALCHSYGI 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               L        R  + +      +         F     F   +  + + +P+     
Sbjct: 64  NKEWLKTGYGEKFRELQIEASRPSNVPLFKKIPQDFPH--FFVKEDICDYLSLPQGAEGS 121

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             I+++             M P    GD++++++  ++   D +L+  R G+ + +    
Sbjct: 122 YAIFSV----------GDFMAPTICDGDLVVISTECEIENRDIVLVNNRWGEAILRRY-R 170

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                + L   N  Y     + S ++ + +++
Sbjct: 171 IVDSDVFLSPDNRAYVPFKKD-SKLKMLGKVV 201


>gi|68536183|ref|YP_250888.1| LexA repressor [Corynebacterium jeikeium K411]
 gi|123734575|sp|Q4JV87|LEXA_CORJK RecName: Full=LexA repressor
 gi|68263782|emb|CAI37270.1| LexA repressor [Corynebacterium jeikeium K411]
          Length = 267

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 52/220 (23%), Gaps = 11/220 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I E I          PS   +A   GL  TS        +E R          + + 
Sbjct: 45  QRRILEVIRDSTIIRGYPPSIREIADAVGLHSTSSVSYHLTQLEKRGYLRRDGKRPRAVD 104

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----VFPTGNKWNTVG 119
                  QL +        + +              +               G       
Sbjct: 105 VRAFDGGQLTNESTKKNAGSPQPTSAAIPEPTTEGETMPEATYVPVVGQIAAGAPILAEQ 164

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E   P         +    +    SM       GD +++ S      GD +      G
Sbjct: 165 NVEAHFPLPQELVGNGELFLLQVVGESMHDAGIFNGDWVVVRSQSVAEFGDFVAAMID-G 223

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +   K         + L+  N  +        +   + ++
Sbjct: 224 EATVKEFQKDADG-LWLIPHNPLFEPI--PAEEATILGKV 260


>gi|288871683|ref|ZP_06118583.2| repressor LexA [Clostridium hathewayi DSM 13479]
 gi|288862447|gb|EFC94745.1| repressor LexA [Clostridium hathewayi DSM 13479]
          Length = 241

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 51/218 (23%), Gaps = 31/218 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I E I     +    P+   +     L  TS                S  S  + L
Sbjct: 44  KQQEILEYIKETILKKGYPPAVREICEAVHLKSTS----------------SVHSHLETL 87

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P           +    N  N   +P 
Sbjct: 88  EEKGYIRRDPTKPRTIEIIDDCFNLTRREVVNVP-LLGTVAAGVPLLAEENIENYYPIPV 146

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P+               +  SM+      GD LI+        G+ ++         
Sbjct: 147 ELLPN-------ADTFMLNVKGNSMINAGIFDGDQLIVERCSTAYDGEIVVALVD-DSAT 198

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V+   +E + +++
Sbjct: 199 VKRFYK-EDGYYRLQPENDEMEPILVDH--LEILGKVI 233


>gi|238916939|ref|YP_002930456.1| repressor LexA [Eubacterium eligens ATCC 27750]
 gi|238872299|gb|ACR72009.1| repressor LexA [Eubacterium eligens ATCC 27750]
          Length = 211

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 54/218 (24%), Gaps = 31/218 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I E I          PS   + +   L  TS   +              ES+ K  
Sbjct: 14  KQSEILEYIKSQILNKGYPPSVRDICQAVNLKSTSSVHAH------------LESLEK-- 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P           +    N      +P 
Sbjct: 60  --NGYIRRDPTKSRTIEIIDDNFNLSRREVVNIP-LLGQVAAGQPLLAVENITEYFPIPS 116

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                   Y    +    K +  SM+ +   +GD +I+      + G+ ++         
Sbjct: 117 E-------YMPGGEVFMLKVKGDSMINMGIYEGDQIIVRKQNTASNGEVIVALVD-DSAT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K         I L   N       V   D E + +++
Sbjct: 169 VKRFYK-ENGHIRLQPENDFMDPIIV--DDCEILGKVI 203


>gi|228968095|ref|ZP_04129100.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791586|gb|EEM39183.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 191

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
             R+ ++ + LA +  +  T+F+   +   +   R    + +      T   + +     
Sbjct: 1   MNRNGISQTDLANELNIPETTFSNWMQ--AKTYPRPDKIQMLADYFKITRSDLTE----E 54

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
             +         +IP+L     GS              +               +    +
Sbjct: 55  EQNYDEECSISVQIPVLGAIACGSPIL-------AEQNYEEYRCEAA------DHLPSGK 101

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSIDL 195
               K +  SM P    G  +++     V  G+   ++     +   K +  + G  I L
Sbjct: 102 LLYLKAKGNSMEPTIPNGAYVMIREQPNVESGEIAAVLVNGDTEATLKRIKKQ-GNIIML 160

Query: 196 MSLNCCYPVDTVEMSD-IEWIARIL 219
           M  N  +    ++ ++  + I + +
Sbjct: 161 MPDNPTHNPMIIDENNPAKIIGKAI 185


>gi|297243707|ref|ZP_06927638.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidase) [Gardnerella vaginalis AMD]
 gi|296888458|gb|EFH27199.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidase) [Gardnerella vaginalis AMD]
          Length = 244

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 53/203 (26%), Gaps = 8/203 (3%)

Query: 20  HNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
           H   PS   +    GL   S  K +   +E +       +  + +   + +I +      
Sbjct: 41  HGFPPSFREIGEAVGLRSPSSVKHQLRTLEDKGILRINANKGRAIEILDNSIVENNSNNK 100

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
            +  ++ +              S      G    G         E               
Sbjct: 101 INKNSS-RVANISAYESDSVINSRDVPLVGRIAAGAPITAEQHIEDVMRLPERLTGTGNL 159

Query: 138 TRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
              +    SM+      GD +++    +   GD +       +   K         + L+
Sbjct: 160 FMLEVHGDSMIDAAICDGDYVVVREQHEAVNGDIVAALLD-NEATVKTF-RNDHGHVWLI 217

Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
             N  Y     + S    + +++
Sbjct: 218 PHNPAYSPI--DGSHATIMGKVV 238


>gi|172048106|sp|A5UQF5|LEXA_ROSS1 RecName: Full=LexA repressor
          Length = 218

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 21/218 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I+   + H   PS   +     +  TS        +E +           ++ 
Sbjct: 11  QRDILGFIEEFTQEHGYPPSIREIQDGLRISSTSVVAYNLRALESKG----------LID 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   +     +    +  +   +PLL    +G           T      + VP  
Sbjct: 61  RDGRVSRGIKIKNMTPMPLSRAQGGRVPLLGVITAGQPLPNPEDTSTT--AVEMIEVPVD 118

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDIV 181
            +P   +          K +  SM+      GDI+++      + G  + +       + 
Sbjct: 119 LAPPEKL----QNVYALKVRGHSMIDALIDDGDIVLMRYQETADNGQMVAVRIEDDNAVT 174

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K      G  + L   N       V+ + +    R++
Sbjct: 175 LKRFYR-EGDKVRLQPANVTMEPIYVDAARVHIQGRVV 211


>gi|301381518|ref|ZP_07229936.1| repressor protein c2 [Pseudomonas syringae pv. tomato Max13]
 gi|302062600|ref|ZP_07254141.1| repressor protein c2 [Pseudomonas syringae pv. tomato K40]
 gi|302132242|ref|ZP_07258232.1| repressor protein c2 [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331017610|gb|EGH97666.1| repressor protein c2 [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 203

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   +A + G+ P +             R P  E I ++L      I       
Sbjct: 1   METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRLLGELGLPILATSIPS 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134
              G        +    Y  P  S                    P   S    I  Y  +
Sbjct: 56  SEPGMQNVAPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109

Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189
            +      +  SM         +G ++++++ I+   G  ++   P + +   K L+   
Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                L  LN  YP   V   D + I  I
Sbjct: 169 AGRYFLKPLNPAYPTLPVT-EDCKLIGVI 196


>gi|220932927|ref|YP_002509835.1| putative prophage repressor [Halothermothrix orenii H 168]
 gi|219994237|gb|ACL70840.1| putative prophage repressor [Halothermothrix orenii H 168]
          Length = 200

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 23/216 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +K  + + ++ +  NLT   L  K  L  +     +R       R PS + +  I    N
Sbjct: 2   EKFGQKLRKLRKEKNLTLRELGNKLNLSFSLLAMYERGE-----RTPSLDKLLLIADFFN 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   LLD    +    +                                     E    
Sbjct: 57  VSTDYLLDHSPLEDLNRKLGIIPYLDNNNFNGDDNSIICE---------------EKLIN 101

Query: 127 HNGIYAIQTQDTRHKTQ-DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           +    +I  +    K + D  +      GD++++     +  G   +   +  ++  + +
Sbjct: 102 YYSRNSINQKYFYLKVEKDDMVNSRIHPGDLVLIRRQKHLKDGAVGVAIYK-DELYIRRV 160

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
                    L + N  Y        +++ I +I+  
Sbjct: 161 YK-NDNLYILQADNPDYTPLFASQKELDIIGQIIMV 195


>gi|213967654|ref|ZP_03395801.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1]
 gi|213927430|gb|EEB60978.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1]
          Length = 229

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 69/225 (30%), Gaps = 20/225 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    ++K +E   ++ E   ++   +A + G+ P +             R P  E I +
Sbjct: 11  MIRRMNRKWYEVARQVMETQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINR 65

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L      I          G        +    Y  P  S                    
Sbjct: 66  LLGELGLPILATSIPSSEPGMQNVAPTVQPSRFYRYPVISWVEAGGWSEAVE------PY 119

Query: 121 PEIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-I 173
           P   S    I  Y  + +      +  SM         +G ++++++ I+   G  ++  
Sbjct: 120 PAGYSDTFEISDYKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAK 179

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            P + +   K L+        L  LN  YP   V   D + I  I
Sbjct: 180 LPESNEATFKKLVED-AGRYFLKPLNPAYPTLPVT-EDCKLIGVI 222


>gi|28870671|ref|NP_793290.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000]
 gi|71735052|ref|YP_275363.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|213969031|ref|ZP_03397171.1| LexA repressor [Pseudomonas syringae pv. tomato T1]
 gi|257484693|ref|ZP_05638734.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625355|ref|ZP_06458309.1| LexA repressor [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|298487639|ref|ZP_07005680.1| SOS-response repressor and protease LexA [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|301385408|ref|ZP_07233826.1| LexA repressor [Pseudomonas syringae pv. tomato Max13]
 gi|302061395|ref|ZP_07252936.1| LexA repressor [Pseudomonas syringae pv. tomato K40]
 gi|302129985|ref|ZP_07255975.1| LexA repressor [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999577|sp|Q87ZB9|LEXA1_PSESM RecName: Full=LexA repressor 1
 gi|28853919|gb|AAO56985.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000]
 gi|71555605|gb|AAZ34816.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|213926330|gb|EEB59885.1| LexA repressor [Pseudomonas syringae pv. tomato T1]
 gi|298157731|gb|EFH98810.1| SOS-response repressor and protease LexA [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323877|gb|EFW79961.1| LexA repressor [Pseudomonas syringae pv. glycinea str. B076]
 gi|320328014|gb|EFW84019.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330867763|gb|EGH02472.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330875602|gb|EGH09751.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330876688|gb|EGH10837.1| LexA repressor [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330888871|gb|EGH21532.1| LexA repressor [Pseudomonas syringae pv. mori str. 301020]
 gi|330986340|gb|EGH84443.1| LexA repressor [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011237|gb|EGH91293.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331015782|gb|EGH95838.1| LexA repressor [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 202

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 62/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E +  E  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEARPDESSLPVI-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +   + +   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ D
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187


>gi|300902558|ref|ZP_07120535.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|301301996|ref|ZP_07208129.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|300405371|gb|EFJ88909.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300842548|gb|EFK70308.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|315253734|gb|EFU33702.1| peptidase S24-like domain protein [Escherichia coli MS 85-1]
          Length = 230

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 17/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  N+  + LA   G+D  + ++ +     G+ +  + +++  I  +   
Sbjct: 2   NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57

Query: 68  TICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            I  L               +E   +   +             +G+   G+  + +   E
Sbjct: 58  DIADLFTSDVKSNTVCKNSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117

Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            R+ +                  +  SM P    GD++ ++ +I    GD + +      
Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDK 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           I  K L       + ++S N  Y    +            ++L  SQ
Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222


>gi|298253523|ref|ZP_06977313.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidase) [Gardnerella vaginalis 5-1]
 gi|297532290|gb|EFH71178.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidase) [Gardnerella vaginalis 5-1]
          Length = 244

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 53/203 (26%), Gaps = 8/203 (3%)

Query: 20  HNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
           H   PS   +    GL   S  K +   +E +       +  + +   + +I +      
Sbjct: 41  HGFPPSFREIGEAVGLRSPSSVKHQLRTLEDKGILRINANKGRAIEILDNSIVENNSNNK 100

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
            +  ++ +              S      G    G         E               
Sbjct: 101 INKNSS-RVANISAYESDSVINSRDVPLVGRIAAGAPITAEQHIEDVMRLPERLTGTGNL 159

Query: 138 TRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
              +    SM+      GD +++    +   GD +       +   K         + L+
Sbjct: 160 FMLEVHGDSMIDAAICDGDYVVVREQHEAVNGDIVAALLD-NEATVKTF-RNDHGHVWLI 217

Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
             N  Y     + S    + +++
Sbjct: 218 PHNPAYSPI--DGSHATIMGKVV 238


>gi|283783054|ref|YP_003373808.1| repressor LexA [Gardnerella vaginalis 409-05]
 gi|283441910|gb|ADB14376.1| repressor LexA [Gardnerella vaginalis 409-05]
          Length = 244

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 53/203 (26%), Gaps = 8/203 (3%)

Query: 20  HNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
           H   PS   +    GL   S  K +   +E +       +  + +   + +I +      
Sbjct: 41  HGFPPSFREIGEAVGLRSPSSVKHQLRTLEDKGILRINANKGRAIEILDNSIVEKNSNNK 100

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
            +  ++ +              S      G    G         E               
Sbjct: 101 INKNSS-RVANISAYESDSVINSRDVPLVGRIAAGAPITAEQHIEDVMRLPERLTGTGNL 159

Query: 138 TRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
              +    SM+      GD +++    +   GD +       +   K         + L+
Sbjct: 160 FMLEVHGDSMIDAAICDGDYVVVREQHEAVNGDIVAALLD-NEATVKTF-RNDHGHVWLI 217

Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
             N  Y     + S    + +++
Sbjct: 218 PHNPAYSPI--DGSHATIMGKVV 238


>gi|134095348|ref|YP_001100423.1| LexA repressor [Herminiimonas arsenicoxydans]
 gi|172044149|sp|A4G713|LEXA_HERAR RecName: Full=LexA repressor
 gi|133739251|emb|CAL62300.1| LexA repressor [Herminiimonas arsenicoxydans]
          Length = 219

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 58/213 (27%), Gaps = 15/213 (7%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   ++I   I    E     P+     A L   S N ++             +++
Sbjct: 1   MIKLTARQEQILNLIRDAIENTGFPPTRAEIAAELGFRSANAAEEH----------LQAL 50

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +  A                G T   +      L  P          G    G+     
Sbjct: 51  ARKGAIEISPGTSRGIRLRDMGGTRSDRSGAQLSLPHPALMQLNLPLVGRVAAGSPILAQ 110

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E     +        D   K +  SM       GD+L +        G  ++ +   
Sbjct: 111 EHIEATYNVDKSLFSAKPDFLLKVRGMSMRDAGILDGDLLAVKKIDSAKNGQIVVAR-LG 169

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            D+  K    + G  I+L+  N  +    V++ 
Sbjct: 170 DDVTVKRY-KKTGSLIELLPENPDFQPIRVDLE 201


>gi|148547818|ref|YP_001267920.1| LexA repressor [Pseudomonas putida F1]
 gi|148511876|gb|ABQ78736.1| SOS-response transcriptional repressor, LexA [Pseudomonas putida
           F1]
          Length = 205

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + + K+  I+E I      H   PS   +A + G    S  +                
Sbjct: 4   MDTLTPKRRAIFEFIRERIAEHGQPPSLADIATRFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K + A  +     +    + G    +  +   +L  P  G          P G   +
Sbjct: 48  ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILEIPVLGQVA----AGAPIGPDLD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
                  +   +     +T D   K +  SM+      GD++ +        G  ++ + 
Sbjct: 101 IHE----QLLLDPSLFRRTPDYLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  + G +  L+  N  Y    V+   
Sbjct: 157 D-GEVTIKRLQRQ-GGTYRLLPRNPAYAPIDVQPEQ 190


>gi|330949976|gb|EGH50236.1| peptidase [Pseudomonas syringae Cit 7]
          Length = 218

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        L    +A   G+  ++  +          +    E+++ + 
Sbjct: 1   MTRQERIARAIAA----SGLKKGEIAALCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121
            AT      L                    L   P  S  +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEGPQKAPAFD---ANVALIDQPKMSFRYPVISWVSAGSWEEAVQPYP 109

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMLILVDTEADVQPGRLVIAKL 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209


>gi|300717777|ref|YP_003742580.1| Repressor protein cI [Erwinia billingiae Eb661]
 gi|299063613|emb|CAX60733.1| Repressor protein cI [Erwinia billingiae Eb661]
          Length = 232

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 56/209 (26%), Gaps = 15/209 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA   G+   + +           R PS E I KIL        +  
Sbjct: 23  KSRMKEMEITQETLAEHLGITKGAVSHWLNA-----RREPSIEDIAKILRLLGM--KEFT 75

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPHNGIYA 132
                    +           +                         + +I         
Sbjct: 76  VNSDGTIAPSGSISNVSIAGPYTKGKKYPVLSKVQAGAWAEACEVYTLKDIDLWLESDAH 135

Query: 133 IQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLIS 187
           IQ      + +  SM         +G  ++ ++  +   G+ ++       +   K LI 
Sbjct: 136 IQGDAFWLEVEGDSMTAPAGLSIPEGTFVLFDTGREAANGNLVIAKLVDDNEATFKKLII 195

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              ++  L  LN  +P+  +  +  + I 
Sbjct: 196 DGNQTY-LKGLNPAWPLIPINGN-CKIIG 222


>gi|330966104|gb|EGH66364.1| LexA repressor [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 202

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E +  E  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEARPDESSLPVI-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +   + +   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            + ++  K      G  + L++ N  +    V++ D
Sbjct: 154 -SDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187


>gi|330882778|gb|EGH16927.1| prophage PSPPH01, Cro/CI family transcriptional regulator
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 203

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   +A + G+ P +             R P  E I + L      I       
Sbjct: 1   METQQISQEEMAERMGVTPGAVGHWMNG-----KREPKIEVINRFLTELGLPILTTSIPA 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134
              G    +   +    Y  P  S                    P   S    I  Y  +
Sbjct: 56  SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109

Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189
            +      +  SM         +G ++++++ I+   G  ++   P + +   K L+   
Sbjct: 110 GKAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                L  LN  YP   V   + + I  I
Sbjct: 169 AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196


>gi|312886574|ref|ZP_07746182.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM
           18603]
 gi|311300977|gb|EFQ78038.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM
           18603]
          Length = 258

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 16/221 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  + ++  LT    A +  +  +     +    E     P  + + KI      
Sbjct: 3   NISSNIKFLRKKKGLTQQQFADELDIKRSLVGAYEENRAE-----PKYDLLKKIALYFEL 57

Query: 68  TICQLLD---LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           ++   ++         +          L            +         +         
Sbjct: 58  SVDDFINEAIDDKWTPKPKGNPANLRILSISVDKEDNENIELVPVKASAGYMNGYADPEY 117

Query: 125 SPHNGIYAIQ----TQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTG 178
                 + +           + +  SMLPL     I+   + +   V   +  ++  ++ 
Sbjct: 118 VAKLPKFYLPMFNKGTHRAFEIKGDSMLPLPSGSIIIAEYVENWADVKTTETYVVVSKSE 177

Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            +V K +    +  + + L+S N  Y    +   DI  + +
Sbjct: 178 GVVYKRIGNKFKDQKKLKLVSDNPVYEPYEISGEDILELWK 218


>gi|320325900|gb|EFW81959.1| prophage PSPPH01, Cro/CI family transcriptional regulator
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320332035|gb|EFW87971.1| prophage PSPPH01, Cro/CI family transcriptional regulator
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 203

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   +A + G+ P +             R P  E I + L      I       
Sbjct: 1   METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134
              G    +   +    Y  P  S                    P   S    I  Y  +
Sbjct: 56  SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109

Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189
            +      +  SM         +G ++++++ I+   G  ++   P + +   K L+   
Sbjct: 110 GKAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                L  LN  YP   V   + + I  I
Sbjct: 169 AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196


>gi|237743737|ref|ZP_04574218.1| LexA repressor [Fusobacterium sp. 7_1]
 gi|256028181|ref|ZP_05442015.1| LexA repressor [Fusobacterium sp. D11]
 gi|260495801|ref|ZP_05815922.1| LexA repressor [Fusobacterium sp. 3_1_33]
 gi|289766113|ref|ZP_06525491.1| LexA repressor [Fusobacterium sp. D11]
 gi|229432768|gb|EEO42980.1| LexA repressor [Fusobacterium sp. 7_1]
 gi|260196648|gb|EEW94174.1| LexA repressor [Fusobacterium sp. 3_1_33]
 gi|289717668|gb|EFD81680.1| LexA repressor [Fusobacterium sp. D11]
          Length = 219

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 68/214 (31%), Gaps = 11/214 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + R+  +H  +  GLA+K  L  T  +K ++         P +++  + + A     
Sbjct: 4   GKTLKRIRLKHKDSLRGLAKKIDLHFTFIDKVEKGTA------PISKNFIENVIAVYPDE 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            ++L   +         +KE  +     S        G    G  +  +  P+   P   
Sbjct: 58  REILKKEYLKETLPNVFQKEDAIKIVSNSEILNLPVYGKASAGRGYMNMDSPDYYMPILR 117

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +    +    SM P    G+  +++        +++ +     +   K L    
Sbjct: 118 GNF-SKRSFFVEITGNSMEPTLEDGEFALVDPDNTAYSKNKIYVVTYNDEGYIKRLEMNN 176

Query: 190 G-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
             + I L S N  Y    +            R++
Sbjct: 177 KLKLITLKSDNPDYEDIDIPEEMQEYFTVNGRVV 210


>gi|237803381|ref|ZP_04590966.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806733|ref|ZP_04593437.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025362|gb|EGI05418.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027847|gb|EGI07902.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 203

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 68/213 (31%), Gaps = 28/213 (13%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET------IC 70
            E  +++   +A + G+ P +             R P  E I + LA             
Sbjct: 1   METQDISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLAELGLPILATALPS 55

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
               +          +    P++ +  +G         +P G   +T  + +        
Sbjct: 56  DEPGMNNVAQTVQPSRFYRYPVISWVEAGGWSEAVE-PYPAGYT-DTFEISD-------- 105

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
           Y  + +      +  SM         +G ++++++ I+   G  ++   P + +   K L
Sbjct: 106 YKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKL 165

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +        L  LN  YP   V   + + I  I
Sbjct: 166 VED-AGRYFLKPLNPAYPTLPVT-EECKLIGVI 196


>gi|134099379|ref|YP_001105040.1| LexA repressor [Saccharopolyspora erythraea NRRL 2338]
 gi|291009924|ref|ZP_06567897.1| LexA repressor [Saccharopolyspora erythraea NRRL 2338]
 gi|133912002|emb|CAM02115.1| putative repressor of the SOS regulon [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 220

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 59/221 (26%), Gaps = 29/221 (13%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIF 59
               ++I   I     R+   PS   +    GL   +S +K  R   E            
Sbjct: 19  PLRQQRILVTIRDWVTRYGYPPSTRQIGDAVGLRSSSSVSKHLRSLEE------------ 66

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                   +      +            +        P          +    +  + + 
Sbjct: 67  --QGFLRRSDTMSRPIDVRAFLRDPSTREPAEDSVPVPVVGDIAAGVPIAAEEHVDDVLK 124

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P   +        +      + +  SM+      GDI+++    + + G  +       
Sbjct: 125 LPRGLTG-------RGNVFGLRVRGDSMIDAAICDGDIVVVRQQPEAHSGQIVAALID-D 176

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K +  RR   + L   N  Y    ++  +   +  ++
Sbjct: 177 EATVK-VYRRRNGHVFLEPRNPDYD--VIDGDEAVILGTVV 214


>gi|56417081|ref|YP_154155.1| hypothetical protein AM1018 [Anaplasma marginale str. St. Maries]
 gi|222475447|ref|YP_002563864.1| hypothetical protein AMF_776 [Anaplasma marginale str. Florida]
 gi|254995253|ref|ZP_05277443.1| hypothetical protein AmarM_04750 [Anaplasma marginale str.
           Mississippi]
 gi|255003433|ref|ZP_05278397.1| hypothetical protein AmarPR_04215 [Anaplasma marginale str. Puerto
           Rico]
 gi|56388313|gb|AAV86900.1| hypothetical protein AM1018 [Anaplasma marginale str. St. Maries]
 gi|222419585|gb|ACM49608.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 215

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 68/216 (31%), Gaps = 18/216 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    +R  +    LA +A +  +           G++  P+++ +  I       
Sbjct: 10  IVARIRSQMDRIGINARELADRASVGKSFVYDIL----SGKSSNPTSKKLMAIAEVLQVP 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+         T      +  L            +             +P       
Sbjct: 66  LAYLVGSDDGLYDVTSGGVLPVYYLAESEDEEDKNNHTRCS-------RFYMPAHT---K 115

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
             +++++       +  SM P     D+++++ + ++     +     +  I+ + L   
Sbjct: 116 LPFSVESLRFY-DVKGDSMSPTLVGQDVVLVDVSDKIAHPAGVFAIRDSMGILIRRLEYV 174

Query: 189 RGR---SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           R      + ++  N  Y      + DI+ + R++W 
Sbjct: 175 RDSQNIMLHVVCDNKKYSSYECPVEDIKVLGRVVWY 210


>gi|223934043|ref|ZP_03625996.1| putative phage repressor [Streptococcus suis 89/1591]
 gi|223897300|gb|EEF63708.1| putative phage repressor [Streptococcus suis 89/1591]
          Length = 251

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 65/245 (26%), Gaps = 35/245 (14%)

Query: 6   HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +K I+   +    ++  +  + L     L  T+     +       R    E +      
Sbjct: 5   NKDIFSKNLKYYMDKKGVDRNQLCSDLDLKYTTVRDWIKGIT--YPRIGKIELLANYFGI 62

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------------- 109
               + +      S    T   +          +    +   G                 
Sbjct: 63  NKSDLIEEKSTIPSTTPKTVSDDVLRLDRDLHSNNHKSWIRYGNALLDKQNTVTDSKNTV 122

Query: 110 ----PTGNKWNTVGVPEIRSPHNGIYAIQTQ----------DTRHKTQDTSMLPLYRKGD 155
                T + +N    P        +  ++ +          D        SM P Y  GD
Sbjct: 123 NELQATYHTYNYYDQPASAGTGQYLNDVKVETIELPIEVDADFVVPIYGDSMEPEYHSGD 182

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEW 214
            + +  ++ ++ GD  +     G+   K L     +   L SLN  Y    +    D   
Sbjct: 183 YVFVKLSVDLSDGDIGVFAYN-GEAYIKQL-RITDQGAYLHSLNPDYDNIPITADTDFRT 240

Query: 215 IARIL 219
           I  ++
Sbjct: 241 IGEVV 245


>gi|257468157|ref|ZP_05632253.1| SOS-response transcriptional repressor [Fusobacterium ulcerans ATCC
           49185]
 gi|317062443|ref|ZP_07926928.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688119|gb|EFS24954.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 205

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 67/213 (31%), Gaps = 18/213 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + I  + ++ N+T   LA K  +   S    +        R    + +  I    N 
Sbjct: 3   NLGQKIMLLRKKENMTQDELAEKLNISKQSILNYE-----TEKRLIPIDVLSNIAKLFNF 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            I       F D        K    +   P  S     +GVF   +  + + +P     +
Sbjct: 58  PIENFFSNTFDDNEI----LKNSSKIKKIPIISKVSAGTGVFGIEDVLDWLEMPTSLCKN 113

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                             SM P     D++++     ++ G   + K        K   +
Sbjct: 114 CD--------FATFIDGDSMEPKVYDNDLILVQKTTFLDNGSIGIFKIGEDVFCKKFYQN 165

Query: 188 RRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              ++I L S+N  Y   ++    +   + +++
Sbjct: 166 PITKAIVLKSINKSYNSISITSEDEFYILGKVV 198


>gi|218689855|ref|YP_002398067.1| putative repressor protein CI [Escherichia coli ED1a]
 gi|260870771|ref|YP_003237173.1| putative repressor protein CI [Escherichia coli O111:H- str. 11128]
 gi|218427419|emb|CAR08317.2| putative repressor protein CI [Escherichia coli ED1a]
 gi|257767127|dbj|BAI38622.1| putative repressor protein CI [Escherichia coli O111:H- str. 11128]
 gi|323177632|gb|EFZ63217.1| helix-turn-helix family protein [Escherichia coli 1180]
          Length = 230

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 17/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  N+  + LA   G+D  + ++ +     G+ +  + +++  I  +   
Sbjct: 2   NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57

Query: 68  TICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            I  L               +E   +   +             +G+   G+  + +   E
Sbjct: 58  DIADLFTSDLKSNTVCKNSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117

Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            R+ +                  +  SM P    GD++ ++ +I    GD + +      
Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDK 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           I  K L       + ++S N  Y    +            ++L  SQ
Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222


>gi|323174411|gb|EFZ60036.1| helix-turn-helix family protein [Escherichia coli LT-68]
          Length = 234

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 58/216 (26%), Gaps = 14/216 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------A 64
           + ++ +     ++ + L    G+      +        + R      +   L        
Sbjct: 12  KRLNELMTNKGISVTQLKSLVGVTYEMARRYTIGAA--KPRASVMNKLALALGVSASYLE 69

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                 +      S    T+     I +L    S   G +    +   +    +      
Sbjct: 70  YGVGEREGCKEMTSIPNPTKPDVYRIEVLDLSVSAGPGTYMLSDYV--DVLYAIEFTTEH 127

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           +        Q           SM P    GD L ++ +++    D +           K 
Sbjct: 128 ARSLFGNRSQDDIKVMTVNGDSMSPTLVSGDRLFVDISVRHFQTDGVYSFVYGKTFHVKR 187

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIAR 217
           L  + G  + ++S N  Y    ++      +  + +
Sbjct: 188 LQMQ-GDKLAVLSDNPAYEKWYIDEKSQDQLYVMGK 222


>gi|229829080|ref|ZP_04455149.1| hypothetical protein GCWU000342_01165 [Shuttleworthia satelles DSM
           14600]
 gi|229792243|gb|EEP28357.1| hypothetical protein GCWU000342_01165 [Shuttleworthia satelles DSM
           14600]
          Length = 204

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 51/220 (23%), Gaps = 35/220 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              +I E I          P+   +    GL  TS  F   ++    G  R   T+    
Sbjct: 9   KQMQILEYIKNEILSSGYPPTVREICDAVGLKSTSSVFAHLEKLENNGYIRRDPTK---- 64

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                                     E                   G    G     V  
Sbjct: 65  ----------------------PRAIEVVDDNFNLTRREVVNIPMLGQVAAGQPLLAVEN 102

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                P    +  + Q    K +  SM+ +    GD +++        G+ ++       
Sbjct: 103 ISNYFPIPAEFIPKEQTFMLKVKGESMINVGIFDGDFIMVEKRPTARNGEIVVALVD-DS 161

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I L   N       V   D + + ++ 
Sbjct: 162 ATVKTFYKEED-HIRLQPENDDMDPILVP--DCQILGKVF 198


>gi|325103942|ref|YP_004273596.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145]
 gi|324972790|gb|ADY51774.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145]
          Length = 257

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 16/220 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +  + ++  LT    A    +  +     +    E     P  + + KI      
Sbjct: 3   RISDNLKYLRKKKGLTQQQFADVMEIKRSLVGAYEEDRAE-----PKYDLLKKIAEYFEI 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP-----PSGSGGFFDSGVFPTG--NKWNTVGV 120
           +I   ++   +D  + + K     L                F +     G  N +     
Sbjct: 58  SIDDFINEKINDKWSPKPKGDPSNLRVLSITLDNNDRENIEFVNVKASAGYLNGYGDPEY 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTG 178
                  +     Q      + +  SMLPL     I+   + +   +  GD  +I  +  
Sbjct: 118 VAELPKFSLPMFNQGTYRAFEIKGDSMLPLPSGSIIIAEYVENWNNLKIGDTAVIVSKND 177

Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            +V K +    +  + I L S N  Y   T+   DI  I 
Sbjct: 178 GVVYKRIASKFKPEKGIKLSSDNQVYEPYTIVTEDILEIW 217


>gi|24380369|ref|NP_722324.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gi|24378389|gb|AAN59630.1|AE015025_2 putative transcriptional regulator [Streptococcus mutans UA159]
          Length = 228

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 15/218 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQ 71
           +    ++  L+ +  A K G+   S+   +    +   +       + K+ +A   +   
Sbjct: 7   LKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYFLSQHD 66

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTVGVPE 122
           ++++      + + K  +                      +        G  ++     +
Sbjct: 67  IVEIYTRLNESNKTKTLKYSQYLLEQQDKERNLMKNKRYPYRVYEKLSAGTGYSY--FGD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P++  G++ ++        G  +      G    
Sbjct: 125 GNFDTVFYDEEIDHDFASWIFGDSMEPIFLNGEVALIKQTGFDYDG-AIYAIDWDGQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           K +       + L+SLN  Y        +    I  I+
Sbjct: 184 KKVYREETG-LRLVSLNKKYADKFAPYDENPRIIGLIV 220


>gi|302189536|ref|ZP_07266209.1| peptidase [Pseudomonas syringae pv. syringae 642]
          Length = 203

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 62/209 (29%), Gaps = 20/209 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   +A + G+ P +             R P  E I ++L      I       
Sbjct: 1   METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRLLTELGLPILTTSLAA 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134
              G    +   +    Y  P  S                    P   S    I  Y  +
Sbjct: 56  SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWNEAVE------PYPVGYSDTFEISDYKAK 109

Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189
            +      +  SM         +G ++++++ I+   G  ++   P + +   K L+   
Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                L  LN  YP   V   + + I  I
Sbjct: 169 AGRYFLKPLNPSYPTLPVT-EECKLIGVI 196


>gi|218557450|ref|YP_002390363.1| repressor protein CI [Escherichia coli S88]
 gi|218364219|emb|CAR01884.1| putative repressor protein CI [Escherichia coli S88]
          Length = 230

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 17/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  N+  + LA   G+D  + ++ +     G+ +  + +++  I  +   
Sbjct: 2   NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGV 57

Query: 68  TICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            I  L               +E   +   +             +G+   G+  + +   E
Sbjct: 58  DIADLFTSDLKSNTVCKNSISEDVTQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIE 117

Query: 123 IRSPH---NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            R+ +                  +  SM P    GD++ ++ +I    GD + +      
Sbjct: 118 YRTDNAVSMFGGRPANHIKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDK 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           I  K L       + ++S N  Y    +            ++L  SQ
Sbjct: 178 IYVKRLQMIPD-KLLVISDNQIYREWGITSENEHRFMVFGKVL-ISQ 222


>gi|116491000|ref|YP_810544.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1]
 gi|122276818|sp|Q04F93|LEXA_OENOB RecName: Full=LexA repressor
 gi|116091725|gb|ABJ56879.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1]
          Length = 212

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 62/234 (26%), Gaps = 45/234 (19%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGI--EGRNR 51
           M       I   I          P+   +    GL  TS      ++ ++ G+  +   +
Sbjct: 1   MAETKQLGILRFIYEKQNEKGYPPTVREIGEAVGLSSTSTVHGHIDRLEKHGLLHKDPTK 60

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             + E   K L A                    +   ++P++    +G            
Sbjct: 61  PRAIEITEKGLRALGVP----------------ETPGKVPIIGLVTAGMPILAVEQ---- 100

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
                 + +P                   +   TSM+ +    GD++ +      + GD 
Sbjct: 101 -AATEFLPIPSDLERF------DGDLFVLRVSGTSMINIGILDGDMVFVRKQDYADNGDI 153

Query: 171 LLIKPRT-----GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++          G+   K           L   N       V+   +  + +++
Sbjct: 154 VVAMTTDFGNGEGEATVKRFFKESN-HYRLQPENDTMAPIIVKN--VSILGKVV 204


>gi|330808506|ref|YP_004352968.1| transcription factor, LexA family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327207059|gb|AEA39179.1| LexA [Pseudomonas fluorescens]
 gi|327376614|gb|AEA67964.1| Putative transcription factor, LexA family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 202

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 60/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E K  E  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEAKADETTLPII-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AQQHVEESCNINPSFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V + D
Sbjct: 154 -GDEVTVKRFKRD-GSKVWLIAENPEFAPIEVNLKD 187


>gi|325276075|ref|ZP_08141887.1| putative prophage repressor protein [Pseudomonas sp. TJI-51]
 gi|324098797|gb|EGB96831.1| putative prophage repressor protein [Pseudomonas sp. TJI-51]
          Length = 242

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 63/217 (29%), Gaps = 18/217 (8%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL---- 72
                +T   +A +  +   + +           R  +     K+L              
Sbjct: 24  RRNRKVTQGAIATELEISQAAVSHYLNGYNPLNARTAAV--FAKMLEVPVSHFSPRLAKE 81

Query: 73  --LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNG 129
                  +        E     L   PS S  +        G+    V   P   +    
Sbjct: 82  IAYTTEAARIGEVASAEDSNIKLTAQPSMSYRYPVISWVAAGDWAEAVEPFPPGFADRYE 141

Query: 130 I--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182
           +  Y  +      + +  SM         +G ++++++    + G  ++     + +   
Sbjct: 142 VSDYEAKGAAFWLEVKGDSMTAPSGVSIPEGMMILVDTDADASSGKLVVAKLTDSNEATF 201

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K LI   GR   L  LN  YP+  V  +  + I  ++
Sbjct: 202 KKLIEDAGRRF-LKPLNPDYPMLQVNGN-CKIIGVVV 236


>gi|260437105|ref|ZP_05790921.1| repressor LexA [Butyrivibrio crossotus DSM 2876]
 gi|292810417|gb|EFF69622.1| repressor LexA [Butyrivibrio crossotus DSM 2876]
          Length = 208

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 53/218 (24%), Gaps = 29/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I   I +     N  PS   +     L  TS   +                +  + 
Sbjct: 9   KQEEILNFIKQHILSKNYPPSVREICEAVNLKSTSSVHAH---------------LATLE 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                +  Q                     L   P          +    N  +   +P 
Sbjct: 54  KNGYISRDQSKTRAIEIVDDDFGFNLPDRELVNVPMIGTVAAGLPLLAEENIRDYFPIPA 113

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P+        +    + +  SM+ +    GD L++      + G+ ++         
Sbjct: 114 DMLPNT-------ETFLLRVKGDSMINMGIYDGDDLLVARQDTASNGEVIVALVD-DSAT 165

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V   + + + +++
Sbjct: 166 VKRFYK-ENNHYRLQPENDNMDPIIV--DECKILGKVI 200


>gi|257486654|ref|ZP_05640695.1| repressor protein c2, putative [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331010131|gb|EGH90187.1| repressor protein c2 [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 218

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        +    +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121
            AT      L           E        L   P+ S  +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEG---PEKEAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 109

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209


>gi|296127819|ref|YP_003635071.1| LexA family transcriptional regulator [Brachyspira murdochii DSM
           12563]
 gi|296019635|gb|ADG72872.1| transcriptional repressor, LexA family [Brachyspira murdochii DSM
           12563]
          Length = 208

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 62/225 (27%), Gaps = 30/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT  +   + I+  + R    +              P +  +             +T   
Sbjct: 1   MTELTDKQRDIFNFLQRFTNENGY------------PPTVKEIMVHFNFASPTAVTTHLT 48

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L               S    T +K     +     S                  T 
Sbjct: 49  A--LEKKGYVKKTGKRARGSVPIDTSEKGNHNMVRIPLLSNEVKAGLLMDVADETVEETY 106

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P+         A    +   K    SM+    ++GD+++++   Q + GD ++ K   
Sbjct: 107 SLPKSI-------AQDEGNFLMKVIGDSMINAHIKEGDMVLVHPTNQADNGDIVVAKIDD 159

Query: 178 G---DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +I  K     +   I L+S N  Y         +  + +++
Sbjct: 160 NGNEEITIKRFFREKD-HIKLISENKNYQPII--KESVALVGKVV 201


>gi|48474480|sp|Q8KT78|LEXA_PSECL RecName: Full=LexA repressor
 gi|21426066|gb|AAM52308.1|AF502251_1 LexA repressor [Pseudomonas chlororaphis]
          Length = 202

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 60/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E K  +  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEAKPDDSSLPII-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AEQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQVVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V + D
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLIAENPEFAPIEVNLKD 187


>gi|149003565|ref|ZP_01828430.1| phage transcriptional repressor [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758297|gb|EDK65297.1| phage transcriptional repressor [Streptococcus pneumoniae
           SP14-BS69]
          Length = 263

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 67/250 (26%), Gaps = 39/250 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN---------- 50
           M  FS       ++ +    N   + L+R  G+ P++     +                 
Sbjct: 16  MKVFS-----ANLNSILSDRNCKQAELSRATGIPPSTLTGYVKGTSLPIPGNVQKIADFF 70

Query: 51  --------------------RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90
                                  +T  I  I           +          +K E+E 
Sbjct: 71  GVPKSVLDPRFITNNFMVNDSSSNTPQIQTIYDELEPPRQGKVLNYAKRQLKEQKNEEET 130

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
            +     +     +D    P                      +         +  SM P 
Sbjct: 131 KINEVSEAIRLYSYDYYDHPASAGTGQYLNDVRVERIELPVDVDAD-FVIPIKGDSMEPD 189

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           Y  GD++ + +++ +N G   +     GD   K L+    ++  L SLN  Y    +   
Sbjct: 190 YHDGDLVFIQTSVDLNDGVIGV-FNYNGDAYIKQLVIDEDQAY-LHSLNPEYKDMPITPD 247

Query: 211 -DIEWIARIL 219
            D   I  ++
Sbjct: 248 TDFRIIGEVV 257


>gi|315145057|gb|EFT89073.1| repressor LexA [Enterococcus faecalis TX2141]
 gi|315160426|gb|EFU04443.1| repressor LexA [Enterococcus faecalis TX0645]
          Length = 209

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 55/221 (24%), Gaps = 29/221 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           T     ++ + I    E     P+   + +   L  TS        +E +       +  
Sbjct: 8   TETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRDPTKP 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + +  T E +                 EK        P          +       +   
Sbjct: 68  RAIELTPEGL-----------------EKIGIQPTTIPMLGVVTAGEPILAVEEASDFFP 110

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P                     +  SM+      GD +I+      N GD ++      
Sbjct: 111 LPPDLRTEENAL------FMLMIRGESMINAGILDGDQVIVRKQSNANNGDIVIAMTDED 164

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N       ++   +  + +++
Sbjct: 165 EATCKRFFR-EVDHIRLQPENDALAPILLDN--VTILGKVV 202


>gi|171911475|ref|ZP_02926945.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136]
          Length = 261

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 9/210 (4%)

Query: 8   KIWEA---IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            I  A   + +   R  LT   LA+            +        +  +   + K L  
Sbjct: 38  DIGNARQLLKQARLRKALTVDQLAKSIRYSTGYLQALEEGRAPASAKVIAL--LEKALNL 95

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              T+ +  +                P +          +   +  +             
Sbjct: 96  DPGTLYRGSEPGVIREDGLTAPYGTKPQVETTKGVGPARYIPLIGYSQAGIGNYEDLYEH 155

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---LIKPRTGDIV 181
                     ++    + +  SM P Y +GDIL ++       GD +   + +   GD++
Sbjct: 156 ESVIAFGTTDSKAFATRLRGDSMEPKYSEGDILYVSPNATPKNGDIVLAKVDEAHGGDVM 215

Query: 182 AKVLISRRGRS-IDLMSLNCCYPVDTVEMS 210
            K+  SR G   I L S N  YP      S
Sbjct: 216 CKLYSSRDGGKNIVLSSYNAAYPPMEFSRS 245


>gi|304388214|ref|ZP_07370335.1| probable transcriptional regulator, repressor [Neisseria
           meningitidis ATCC 13091]
 gi|304337825|gb|EFM03973.1| probable transcriptional regulator, repressor [Neisseria
           meningitidis ATCC 13091]
          Length = 236

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    +     
Sbjct: 26  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 80

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132
             K+                            G     +        +            
Sbjct: 81  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 140

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N        D L +     +++ K L    G  
Sbjct: 141 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 199

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           I+++S N  YP   + +     D+E I R+ W
Sbjct: 200 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 231


>gi|152981403|ref|YP_001352990.1| LexA repressor [Janthinobacterium sp. Marseille]
 gi|172049087|sp|A6SXJ3|LEXA_JANMA RecName: Full=LexA repressor
 gi|151281480|gb|ABR89890.1| LexA transcription regulation repressor [Janthinobacterium sp.
           Marseille]
          Length = 219

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 15/213 (7%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   ++I   I    E     P+       L   S N ++             +++
Sbjct: 1   MIKLTARQEQILNLIRDAIENTGFPPTRAEIATELGFRSANAAEEH----------LQAL 50

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +  A                G   E+       L  P          G    G+     
Sbjct: 51  ARKGAIEISPGTSRGIRLRDMGNGDERFPGRQMALPHPALMQLSLPLVGRVAAGSPILAQ 110

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E     +        D   K +  SM       GD+L +        G  ++ +   
Sbjct: 111 EHIEATYDVDRSLFSAKPDFLLKVRGMSMRDAGILDGDLLAVKKIDTAKNGQIVVAR-LG 169

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            ++  K    + G  I+L+  N  +    V+++
Sbjct: 170 EEVTVKRY-KKSGSLIELLPENPDFEPIRVDLA 201


>gi|254497251|ref|ZP_05110059.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12]
 gi|254353479|gb|EET12206.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12]
          Length = 224

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 14/222 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +KI E I +  +   LT   L+     L P+  N  +R       R P  E I ++  A 
Sbjct: 5   EKIGERIFQERQAKGLTRKALSELTDDLKPSRINNWERGI-----RTPGPEEIKQLAEAL 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           +     L+ L        E       L+    +         +        +  +  I  
Sbjct: 60  DVAPGYLMCLTDDKQVKQEFPW-LGALIPLLNAQQACDPKQYIQAIKEDRKSDAISFIPL 118

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKV 184
             +    +         QD SM P  + GDILI++    +  G  ++I    + ++  + 
Sbjct: 119 SPDLTAQLGNNSFALCIQDDSMTPELKIGDILIVDPDQIIRPGGIVVIHLQDSKEVTVRR 178

Query: 185 LISRRGR----SIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221
                        +L+++N  +    V  S   + I  ++ A
Sbjct: 179 YKQLSAGNPVKEYELIAVNENWASIRVTRSCGHKIIG-VVLA 219


>gi|256845641|ref|ZP_05551099.1| LexA repressor [Fusobacterium sp. 3_1_36A2]
 gi|256719200|gb|EEU32755.1| LexA repressor [Fusobacterium sp. 3_1_36A2]
          Length = 218

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 63/214 (29%), Gaps = 11/214 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  +  ++  +   LA K  +  T  +K ++       R  + +++ K +       
Sbjct: 4   GKILKEIRLKNGDSLQRLAEKTEIVFTYIDKIEKGT-----RPINKDNLEKFIKVYPLYK 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            Q       +      K     +       +      G    GN +  +   EI      
Sbjct: 59  KQFEKAYLDEIMPESLKGSTFNMEE-QKVNTVILPVYGKASAGNGYINLDQ-EIYYFPIK 116

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +    +    SM P    GD  +++        +++ +     +   K ++   
Sbjct: 117 KGDFSDRSFLVEISGNSMEPTLEDGDYALVDPDNIDYVKNKIYVVTYNDESFIKRMVMDA 176

Query: 190 GRSID-LMSLNCCYPVDTVEMSD---IEWIARIL 219
              I  L S N  Y    +       ++   R++
Sbjct: 177 KSKIVMLKSDNPEYEDILITKDMQVYLKIEGRVI 210


>gi|237799454|ref|ZP_04587915.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|302186661|ref|ZP_07263334.1| LexA repressor [Pseudomonas syringae pv. syringae 642]
 gi|330898298|gb|EGH29717.1| LexA repressor [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330953935|gb|EGH54195.1| LexA repressor [Pseudomonas syringae Cit 7]
 gi|330976184|gb|EGH76246.1| LexA repressor [Pseudomonas syringae pv. aptata str. DSM 50252]
 gi|331022310|gb|EGI02367.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 202

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E +  +  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEARPDDSSLPVI-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +   + +   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ D
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187


>gi|256847032|ref|ZP_05552478.1| LexA repressor [Lactobacillus coleohominis 101-4-CHN]
 gi|256715696|gb|EEU30671.1| LexA repressor [Lactobacillus coleohominis 101-4-CHN]
          Length = 208

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 56/224 (25%), Gaps = 40/224 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNK-SKRFGIEGRNRWPSTE 56
               +   I +        P+   +    GL  TS      N+  K+  ++     P   
Sbjct: 8   KQTAVLNYIHKQVAAQGYPPTVREICAAVGLSSTSTVHGHINRLIKKGYLKKDPAKPRAL 67

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            I                                P     P          +    +  +
Sbjct: 68  EI---------------------TPEGLSFLGIEPKQNQIPLLGIVAAGEPILAEQDATD 106

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +P   + H+            + Q TSM+ +    GD +I+      N GD ++   
Sbjct: 107 FFPIPPTINDHD-------DLFMLQIQGTSMINMGILDGDKVIVRRQNTANNGDVVIAMT 159

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   K           L   N       ++   +  + +++
Sbjct: 160 SDNEATCKRFFKEE-SYYRLQPENDTMDPIILDH--VTILGKVV 200


>gi|26989835|ref|NP_745260.1| LexA repressor [Pseudomonas putida KT2440]
 gi|29427652|sp|P59479|LEXA2_PSEPK RecName: Full=LexA repressor 2
 gi|24984739|gb|AAN68724.1|AE016504_7 LexA repressor [Pseudomonas putida KT2440]
          Length = 202

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 63/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + + K+  I+E I      H   PS   +A + G    S  +                
Sbjct: 1   MDTLTPKRRAIFEFIRERIAEHGQPPSLADIATRFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K + A  +     +    + G    +  +   +L  P  G            G    
Sbjct: 45  ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILEIPVLGQVAAGAPIGPDLGIHEQ 101

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +  P +                 K +  SM+      GD++ +        G  ++ + 
Sbjct: 102 LLLDPSLFRRTPD--------YLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  + G +  L+  N  Y    V+   
Sbjct: 154 D-GEVTIKRLQRQ-GGTYRLLPRNPAYAPIDVQPEQ 187


>gi|257483129|ref|ZP_05637170.1| peptidase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330891219|gb|EGH23880.1| peptidase [Pseudomonas syringae pv. mori str. 301020]
 gi|330955076|gb|EGH55336.1| peptidase [Pseudomonas syringae Cit 7]
          Length = 203

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   +A + G+ P +             R P  E I + L      I       
Sbjct: 1   METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134
              G    +   +    Y  P  S                    P   S    I  Y  +
Sbjct: 56  SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109

Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189
            +      +  SM         +G ++++++ I+   G  ++   P + +   K L+   
Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                L  LN  YP   V   + + I  I
Sbjct: 169 AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196


>gi|332686571|ref|YP_004456345.1| SOS-response repressor and protease LexA [Melissococcus plutonius
           ATCC 35311]
 gi|332370580|dbj|BAK21536.1| SOS-response repressor and protease LexA [Melissococcus plutonius
           ATCC 35311]
          Length = 206

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 5/111 (4%)

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQ-DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
            GN   T+  P    P       +            SM+      GD +I+      + G
Sbjct: 92  AGNPILTLEEPVGVFPILPDLQTEENELFMLTICGESMIHAGILDGDQVIVRKQSTADNG 151

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++      +   K        SI L   N  +    +    +  + +++
Sbjct: 152 DIVIAMTNQNEATCKRFFK-ENNSIRLQPENDQFEPIILTN--VTILGKVI 199


>gi|256391012|ref|YP_003112576.1| SOS-response transcriptional repressor, LexA [Catenulispora
           acidiphila DSM 44928]
 gi|256357238|gb|ACU70735.1| SOS-response transcriptional repressor, LexA [Catenulispora
           acidiphila DSM 44928]
          Length = 228

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 28/223 (12%)

Query: 2   TSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              + ++  +   I     R    PS   +    GL  TS  + +   +E +        
Sbjct: 23  PRLTERQTAVLNVIRDSVRRRGYPPSMREIGEAVGLQSTSSVRHQLVTLESK------GF 76

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + +        I +  +        +E +   +PL+    +G                  
Sbjct: 77  LHRDANRPRAYIVRGAENAGRAANGSEPEPAYVPLVGRIAAGGPI------LAEERVEEL 130

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           + +P+           + +    +    SM       GD++++    Q   G+ +     
Sbjct: 131 IPIPKQMVG-------EGEFFALRVVGDSMIEAAICDGDVVVIRQQKQAENGEFVAAMID 183

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G+   K L  +   ++ LM  N  Y       +D   + R++
Sbjct: 184 -GEATVKEL-KKEANAVWLMPRNAAYEPI--PGNDAVILGRVV 222


>gi|225572147|ref|ZP_03781011.1| hypothetical protein RUMHYD_00441 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040319|gb|EEG50565.1| hypothetical protein RUMHYD_00441 [Blautia hydrogenotrophica DSM
           10507]
          Length = 213

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 51/219 (23%), Gaps = 30/219 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I E I          PS   +     L  TS                S  +  + L
Sbjct: 14  KQREILEYIKNEILNRGFPPSVREICEAVELKSTS----------------SVHAHLETL 57

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P          G    G     V   E
Sbjct: 58  EKNGYIRRDPTKPRTIEILDDNFNLLRREMVNVPVV--------GTVTAGQPILAVENIE 109

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    +    Q      Q  SM+      GD +++        G+ ++      +  
Sbjct: 110 SYFPVPAEFMPNQQCFILNVQGESMVNAGILDGDQVLVQQQPDAQNGEIVVAL-LGEEAT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            K     +     L   N       V+   + + + ++ 
Sbjct: 169 VKRFYKEKN-CYRLQPENDTMEPIIVDSDQEFKILGKVF 206


>gi|269958511|ref|YP_003328298.1| putative transcriptional regulator [Anaplasma centrale str. Israel]
 gi|269848340|gb|ACZ48984.1| putative transcriptional regulator [Anaplasma centrale str. Israel]
          Length = 215

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 65/216 (30%), Gaps = 18/216 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    ++  +    LA +A +  +           G++  P+++ +  I       
Sbjct: 10  IVARIRSQMDKIGINARELADRASVGKSFVYDIL----SGKSSNPTSKKLMAIAEVLQVP 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+                +  L            +             +P       
Sbjct: 66  LAYLVGSDDGLYDVASGGMLPVYYLAESEDEEEKHNHTRCS-------RFYMPAHTKLPF 118

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            +         +  +  SM P     D+++++ + ++     +     +  I+ + L   
Sbjct: 119 NV----ENLRFYDVKGDSMSPTLVGQDVVLVDVSDRIAHPAGVFAIRDSMGILIRRLEYV 174

Query: 189 RG-RSIDL--MSLNCCYPVDTVEMSDIEWIARILWA 221
           R  + I L  +  N  Y      + DI+ + R++W 
Sbjct: 175 RDSQHIMLHVVCDNKKYSSYECPVEDIKVLGRVVWY 210


>gi|289167282|ref|YP_003445549.1| repressor (phage associated) [Streptococcus mitis B6]
 gi|288906847|emb|CBJ21681.1| repressor (phage associated) [Streptococcus mitis B6]
          Length = 246

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 30/240 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARK--------AGLDPTSFNKSKRFGIEGRNRW-------- 52
           I   I  + + + LT   LA             +    +K +    E R           
Sbjct: 2   IGTKIRELRKNNKLTLEELADALNQKYPNTINFNKGKISKWENNKEEPRLSSVKIIADFF 61

Query: 53  -----------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
                       S   I  I     E   + +     +    +   K + +   P     
Sbjct: 62  DVPLDYFNDTPDSHPEILTIYNQLEEPKQEKVLDYAKEQLEGQNNSKIVSIFDKPQDDDY 121

Query: 102 G-FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
              +  G+   G+         +          +  DT  K    SM P+    D+L + 
Sbjct: 122 ITDYVEGLVAAGHGTFQEDNLHMEVKLRADDVPEEYDTIAKVAGDSMEPMIEDNDLLFIR 181

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              QV+  D  + +   G    K L         L SLN  Y    + E  DI  I  ++
Sbjct: 182 VTSQVDINDIGIFQIN-GKNFVKKLKRDYNGGWYLQSLNNSYEEIHLTENDDIRTIGEVV 240


>gi|269104777|ref|ZP_06157473.1| phage repressor [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161417|gb|EEZ39914.1| phage repressor [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 238

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 21/213 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-------LDPTSFNKSKRFGIEGRNRWP 53
           M       + + I    +   LT   LA+K             S +  +           
Sbjct: 12  MVM----TLGDRIKERRQALELTQEELAQKVAKIVTDMKFSRVSLSNIELGVQN----SV 63

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
             + +  +      T   L+          +        +    +             G 
Sbjct: 64  KDKVLLALSNFLKCTPEWLVYGTGPISSDKKSDSVSNVQVESALTQQCPLI--SWVQAGA 121

Query: 114 KWNTVGVPEIRSPH-NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRL 171
                  PE    +        ++    +    SM+  + +GD++ ++    +   G  +
Sbjct: 122 FTEIREYPESDYQYYPSPVKCGSRTFILRVHGDSMMDRFHEGDLIYVDPDQIEPIHGKFV 181

Query: 172 L-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
           +     + +   K L    G+ + L +LN  YP
Sbjct: 182 IAQLEDSAEATFKQLQIVDGQKL-LKALNPNYP 213


>gi|260557994|ref|ZP_05830206.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260408504|gb|EEX01810.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 250

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 68/242 (28%), Gaps = 27/242 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +     + +  +  +  L    L++K G+  +S +  +           + + +  
Sbjct: 11  MAELTP---GDRLRFLRTQAGLNQKELSKKTGVGQSSISDFENNVKI-----MAADKLAA 62

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK--EIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I  A N T   ++    +     +KK    E          +  ++D      G  +   
Sbjct: 63  IAKALNSTSEYIIFGGSNAKLMEDKKLAVWEDGDEIPSDMVAIKYYDDVRVSAGYGYMNE 122

Query: 119 G------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
                  +   R   +              Q  SM P +  G ++ ++ +        + 
Sbjct: 123 TPQTHKQLWFRRDSLDAYNVSIKDSEAVVVQGESMYPEFSDGQVIAVDRSATKIFDGEIY 182

Query: 173 IKPRTGDIVAKVLI---SRRGRSIDLMSLNCC--------YPVDTVEMSDIEWIARILWA 221
                 D   K L     +       +S N          Y    +E   I  I +  W 
Sbjct: 183 AFQVGEDTKVKFLFNWTEQGEGGFKAVSRNEDKIRFPDEYYSPARIEAEGIYIIGQYWWK 242

Query: 222 SQ 223
           SQ
Sbjct: 243 SQ 244


>gi|300871392|ref|YP_003786265.1| LexA repressor [Brachyspira pilosicoli 95/1000]
 gi|300689093|gb|ADK31764.1| LexA repressor [Brachyspira pilosicoli 95/1000]
          Length = 208

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 32/226 (14%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT  + K+  I   + +    +              P +  +              T  +
Sbjct: 1   MTELTDKQKHILNFLQKFMNENGY------------PPTVKEIMVHFNFASP-TAVTTHL 47

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +                    T EKK+  I +         G          +  +  
Sbjct: 48  TALEKKGYVKKTGKRARGSVPINTVEKKDNLIKIPLLTNEVKAGLLMD--VSDESYEDFF 105

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI-QVNCGDRLLIKPR 176
            +PE         A    +   K +  SM+    ++GD++++N +  +   GD ++ K  
Sbjct: 106 PLPESI-------AQNENNFLMKVKGDSMIDAHIKEGDMVLVNPSNIEPQNGDIVVAKID 158

Query: 177 TG---DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +I  K     +   I L++ N  YP        +  + +++
Sbjct: 159 DNGDEEITIKRFFKEKD-CIKLVAENKEYPPII--QEKVSIVGKVV 201


>gi|300691708|ref|YP_003752703.1| transcriptional lexA repressor [Ralstonia solanacearum PSI07]
 gi|299078768|emb|CBJ51428.1| transcriptional lexA repressor [Ralstonia solanacearum PSI07]
          Length = 216

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 23/216 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I +  +R    P  + +A + G    +                + E
Sbjct: 1   MATLTPRQRQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                 R           L             G    G+   
Sbjct: 45  EHLRALARKGVIELTPGASRGIRLRAEGDASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +        D   K +  SM       GD+L +  A +   G  ++ + 
Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRANEAANGKIVVAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K    + GR ++L++ N  +    V++  
Sbjct: 164 LGDDVTVKRFQRK-GRHVELIAENPDFEPIHVDLDR 198


>gi|161869489|ref|YP_001598656.1| transcriptional regulator [Neisseria meningitidis 053442]
 gi|218767679|ref|YP_002342191.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
 gi|254804438|ref|YP_003082659.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
 gi|121051687|emb|CAM07990.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
 gi|161595042|gb|ABX72702.1| transcriptional regulator [Neisseria meningitidis 053442]
 gi|254667980|emb|CBA04278.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
 gi|254671461|emb|CBA09000.1| peptidase, S24 family [Neisseria meningitidis alpha153]
 gi|319409934|emb|CBY90261.1| putative transcriptional regulator [Neisseria meningitidis WUE
           2594]
 gi|325133929|gb|EGC56585.1| putative transcriptional regulator [Neisseria meningitidis M13399]
 gi|325135854|gb|EGC58466.1| putative transcriptional regulator [Neisseria meningitidis M0579]
 gi|325141783|gb|EGC64232.1| putative transcriptional regulator [Neisseria meningitidis
           961-5945]
 gi|325144058|gb|EGC66368.1| putative transcriptional regulator [Neisseria meningitidis
           M01-240013]
 gi|325197768|gb|ADY93224.1| putative transcriptional regulator [Neisseria meningitidis G2136]
 gi|325202655|gb|ADY98109.1| putative transcriptional regulator [Neisseria meningitidis
           M01-240149]
 gi|325203646|gb|ADY99099.1| putative transcriptional regulator [Neisseria meningitidis
           M01-240355]
 gi|325206594|gb|ADZ02047.1| putative transcriptional regulator [Neisseria meningitidis
           M04-240196]
 gi|325207599|gb|ADZ03051.1| transcriptional regulator [Neisseria meningitidis NZ-05/33]
          Length = 228

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    +     
Sbjct: 18  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132
             K+                            G     +        +            
Sbjct: 73  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N        D L +     +++ K L    G  
Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 191

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           I+++S N  YP   + +     D+E I R+ W
Sbjct: 192 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 223


>gi|255016583|ref|ZP_05288709.1| Repressor protein CI [Bacteroides sp. 2_1_7]
          Length = 246

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 14/230 (6%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112
              I K+                 +  + +   +             G F      F  G
Sbjct: 66  LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +    V   +  S       ++       T      P +  G +++++    V  GD  +
Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
            +    +   K LI   G+   L  LN  YP+          + ++   S
Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKLSLVS 230


>gi|254480410|ref|ZP_05093657.1| LexA repressor [marine gamma proteobacterium HTCC2148]
 gi|214038993|gb|EEB79653.1| LexA repressor [marine gamma proteobacterium HTCC2148]
          Length = 200

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 40/217 (18%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I +  +     P  + +AR+ G                        
Sbjct: 1   MEKLTNRQQQVLDVIRQHIDHTGYPPTRADIARELGF----------------------- 37

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K   A  E +  L      +      +  ++P     P        + V    N  +
Sbjct: 38  ---KSANAAEEHLKALARKGAIEIIPGASRGIKLPDTAGIPIVGRVAAGNPVLAEENIED 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +P         +     D   +    SM+ +    GD+L ++S    N GD ++ + 
Sbjct: 95  YCDLPPE-------FFKPRADYFLRVTGDSMIDIGIFDGDLLAVHSTPVANNGDVVVARI 147

Query: 176 RTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSD 211
              ++  K L        + L+  N  Y    V++ +
Sbjct: 148 -EDEVTVKRLQKGPNEHQLQLLPENPDYQPIKVDLRE 183


>gi|195546597|ref|YP_002117625.1| C repressor protein [Rhizobium phage 16-3]
 gi|218512144|sp|P15238|RPC_BP163 RecName: Full=Repressor protein C
 gi|102642540|gb|ABF71321.1| C repressor protein [Rhizobium phage 16-3]
          Length = 263

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 58/265 (21%), Gaps = 57/265 (21%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+  +     + +    E   +T + LAR+ G    + N            W        
Sbjct: 8   MSRLT-----DTLAAKLEEAGITQAELARRVGQSQQAINNLFAGRAASSMVWRELARELG 62

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP---------- 110
           I       +            +     K   +L  P             P          
Sbjct: 63  IDEQEMRQMMTEAGRDPEKVTSLAGLRKYRAVLPSPREPFPIIRQQEHLPRPNATIGEET 122

Query: 111 --------------------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
                                      G+  + V  P                       
Sbjct: 123 NMEPRKKKLLPVLGEAVGGEDGEYIFNGSVLDYVDCPPSLENVP-------NAYAVYIDG 175

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--------IVAKVLISRRGRSIDLM 196
            SM+P +R G+ + ++       GD ++I+    +           K  +      + L 
Sbjct: 176 ESMVPRFRPGETVWVHPTKPPRRGDDVVIQIHPDNEDDGAPPRGFVKEFVGWTANKLVLQ 235

Query: 197 SLNCCYPVDTVEMSDIEWIARILWA 221
             N            +  +  I+ A
Sbjct: 236 QYNPT-KKIEFTREQVVSVHPIILA 259


>gi|330895379|gb|EGH27717.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 314

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 62/235 (26%), Gaps = 27/235 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-----NRWPST--ESIFKIL 62
            + +  +     L+ S  A + G+     N     GI GR      R      E +    
Sbjct: 72  GDRLKYLLRSRGLSASQFAAEFGISNQMLNNWFVRGIPGRHLLSVARRLGMNPEWLESGA 131

Query: 63  AATNETICQLLDL-----------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
              + +                                       P  S  + +      
Sbjct: 132 GEPHYSKIDEDYRRLSAPEKVKADQAYREWNEAHSPTTNIEPAIQPRRSFEYPEVSWVQA 191

Query: 112 GNKWNTVGVPEIRS--PHNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQV 165
           G+    +    I     H+            K    SM       + +G ++++   ++ 
Sbjct: 192 GSPSEAIDPSNIALCPRHSSDVWAGEGGFWLKVTGNSMTSSGPASFPEGHLILVAPDLEP 251

Query: 166 NCGD-RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G   +     + +   K L+   G  + L  LN  +PV  +     E +  ++
Sbjct: 252 RPGQFGVARLVDSNEATFKQLVKDAGD-LYLRPLNPAFPVKELT-DSWEIVGTVV 304


>gi|289676195|ref|ZP_06497085.1| peptidase [Pseudomonas syringae pv. syringae FF5]
          Length = 203

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 63/211 (29%), Gaps = 24/211 (11%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ---LL 73
            E   ++   +A + G+ P +             R P  E I + L      I       
Sbjct: 1   METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPT 55

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIYA 132
             P         +               G +   V P    + +T  + +        Y 
Sbjct: 56  SEPGMHNVEHTVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISD--------YK 107

Query: 133 IQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLIS 187
            + +      +  SM         +G ++++++ I+   G  ++   P + +   K L+ 
Sbjct: 108 AKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVE 167

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                  L  LN  YP   V   + + I  I
Sbjct: 168 D-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196


>gi|330816792|ref|YP_004360497.1| LexA repressor [Burkholderia gladioli BSR3]
 gi|327369185|gb|AEA60541.1| LexA repressor [Burkholderia gladioli BSR3]
          Length = 214

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 60/214 (28%), Gaps = 25/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ I R  ER    P  + +A + G              E   R  + +
Sbjct: 1   MTKLTARQQQVFDLIRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                 R           L             G    G+   
Sbjct: 54  GVIELAAG-----------ASRGIRLLGDDAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 102

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 103 AQEHISQNYTCDPALFSSKPDYLLKVRGLSMRDAGILDGDLLAVQKRSEAKDGQIIVAR- 161

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L       I+L++ N  Y    V+ 
Sbjct: 162 LGDDVTVKRLKRHSSG-IELIAENPDYENIFVKA 194


>gi|306825469|ref|ZP_07458809.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432407|gb|EFM35383.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 257

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 76/252 (30%), Gaps = 42/252 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG--IEGRNRWPSTESIFKILAAT 65
           K+ E +      H L+       + L     +  ++       +   PS E+I KI    
Sbjct: 2   KLGELLKAYRTEHKLSMDAFCELSDLTKGYISMLEKNEHPKSKKPIVPSYETIEKIAKGM 61

Query: 66  NETICQLLDLPFSDGRTTEK-------------------KEKEIPLLYFPPSGSGGFFDS 106
             ++  L+D+   D                           ++  +L +         + 
Sbjct: 62  RISVEGLIDMLDDDQEIQINATPPVLSKSSIQTIYDQLAPPRQGKVLTYAEKQLNEQRNE 121

Query: 107 GVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQ----------DTRHKTQDTSML 148
                           ++    P        +  ++ +          D     +  SM 
Sbjct: 122 EETKINEVSEVIQLYSYDYYDHPASAGTGQYLNDVRVERIELPVDVDADFVIPIKGDSME 181

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           P Y  GD++ + +++ +N G   +     GD   K L+  + ++  L SLN  Y    + 
Sbjct: 182 PNYHDGDLVFIQTSVDLNNGVIGV-FNYNGDAYIKQLVIDKDQAY-LHSLNPVYKDMPIT 239

Query: 209 MS-DIEWIARIL 219
              D   I  ++
Sbjct: 240 TETDFRIIGEVV 251


>gi|317402765|gb|EFV83310.1| hypothetical protein HMPREF0005_01843 [Achromobacter xylosoxidans
           C54]
          Length = 253

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 58/228 (25%), Gaps = 31/228 (13%)

Query: 27  LARKAGLDPTSFNKSKRF---GIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
           LA +AG+     ++  +      +   R        +I A   +    +           
Sbjct: 24  LAERAGVSRKYLDQILQGFQGKRDKNPRRVGDALAARISAGLGQPAHWMDLPHPDLWHEL 83

Query: 84  EKKEKEIPLLYFPPSGSGG------------FFDSGVFPTGNKWN----------TVGVP 121
                         S + G                     G+                 P
Sbjct: 84  SPDVIADEPPGRLVSFNHGRLGRPDHGNVLIAQFDTGGAMGSGLELRDQPGVIQSWNVSP 143

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E    +   ++             SM P++  GD LI++  +Q    D +       +  
Sbjct: 144 EWLQKNVRGFSASKNLCIVTGFGDSMRPMFNPGDPLIVDRGVQAVEYDAIYFFRVGSEGF 203

Query: 182 AKVLISRR---GRSIDLMSLNCCYPVDTVEMS-DIEWIARI--LWASQ 223
            K L       G  +   S N  Y    +    D E   R+  +W S+
Sbjct: 204 IKRLQRIPTASGLVVRAKSENTKYDAWDITEGMDFEVFGRVLKVWRSE 251


>gi|308388740|gb|ADO31060.1| putative transcriptional regulator [Neisseria meningitidis
           alpha710]
 gi|325129691|gb|EGC52504.1| putative transcriptional regulator [Neisseria meningitidis
           OX99.30304]
          Length = 228

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    +     
Sbjct: 18  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132
             K+                            G     +        +            
Sbjct: 73  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYITR 132

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N        D L +     +++ K L    G  
Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 191

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           I+++S N  YP   + +     D+E I R+ W
Sbjct: 192 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 223


>gi|319793947|ref|YP_004155587.1| transcriptional repressor, lexa family [Variovorax paradoxus EPS]
 gi|315596410|gb|ADU37476.1| transcriptional repressor, LexA family [Variovorax paradoxus EPS]
          Length = 227

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 13/209 (6%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I + I     R    P  + +A + G              E   +  + + + ++++
Sbjct: 11  QQQILDLIQSAIARTGAPPTRAEIANELGFKSA-------NAAEEHLQALARKGVIELVS 63

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            T+  I    D   S   T  ++  +   L  P          G    G+        + 
Sbjct: 64  GTSRGIRLKGDALRSLNETRHREGGQFS-LSLPGMAQLALPLIGRVAAGSPILAQEHVDQ 122

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +  D   K +  SM       GD+L + +  +   G  ++ +    ++  
Sbjct: 123 TYYVENTLFQRQPDYLLKVRGMSMRDAGIMDGDLLAVQATKEARNGQIVVAR-LGDEVTV 181

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L     + I+L + N  YP   V+  +
Sbjct: 182 KRLKR-NKQVIELHAENPDYPTIIVQPGE 209


>gi|148547010|ref|YP_001267112.1| putative prophage repressor [Pseudomonas putida F1]
 gi|148511068|gb|ABQ77928.1| putative prophage repressor [Pseudomonas putida F1]
          Length = 224

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 14/210 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +  K    +    E   LT   LA + G+   S           + R P  ES+ +
Sbjct: 1   MPAMNMDKWIALVRDRMEELGLTQEQLAERVGVSQGSVGHWVN-----KRRQPKLESMNR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG- 119
            L         +       G+   ++                +     +P    W+ +  
Sbjct: 56  TLVEIGMPHYCVRLQLRIHGQADGERCVSGVDDDDDEPDLMRYIVCFRYPV-LGWSELEA 114

Query: 120 --VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLI 173
               E        Y  Q +      ++ +M  +      +G  ++++  ++   G  ++ 
Sbjct: 115 ATAVEPAVFEQTDYLAQGKAFWLTVENDAMSAVSGRSVPQGMRMLVDPGVEAEAGRLVIA 174

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
           +      + + L    G+   L +LN  YP
Sbjct: 175 RQPGKPAIFRELAEEGGQRY-LKALNSNYP 203


>gi|322411714|gb|EFY02622.1| phage repressor-like protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 230

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 66/230 (28%), Gaps = 21/230 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FS  ++  A  R+A++  L    L +   ++  + +  ++       +    E +  + 
Sbjct: 1   MFSGDQLKTA--RLAKQ--LNQEELGQLLNVNKMTISNWEKGKNIPNQKHF--EQLLSLF 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T +   +   L     +     ++++                    +   ++      
Sbjct: 55  GLTADYFNKDHRLLIPFNQLLPVNKEKVISYSEQLLNQQTPITKLPNKSKKVYSYRVYES 114

Query: 123 IRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           + +     Y                 D        SM P Y  G+++++        G  
Sbjct: 115 LSAGTGYSYFGDGNFDVVFHDEQLDYDFASWVFGDSMEPTYLNGEVVLIKQDSFDYDG-A 173

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           +      G    K +       + L+SLN  Y        +    I +I+
Sbjct: 174 IYAVEWDGQTYIKKVYREEDG-LRLVSLNKKYSDKFAPYDEDPRIIGKII 222


>gi|91201180|emb|CAJ74240.1| similar to LexA transcriptional repressor, SOS response regulator
           [Candidatus Kuenenia stuttgartiensis]
          Length = 216

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 56/219 (25%), Gaps = 33/219 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                   +    +     P+   + R   L  T+  K                    IL
Sbjct: 16  KQADFLAFLKASLQEKGYPPTVREIMRGMDLSSTNIVK----------------KYLDIL 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A       Q       +         E  L+    S   G               +    
Sbjct: 60  ARKGHIKKQYNSPRAIEIIEAPAGHAETNLIPIVGSVKAGAPHPA----------IEDIM 109

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +            + +  SM+    ++GD++++      N  + ++     G+  
Sbjct: 110 GYLAVDKTICRTGDAFFLRVEGDSMINAHIQEGDLVLVRPQPVANNREIVVALIN-GEAT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218
            K    + G +++L   +       +  E  ++  I ++
Sbjct: 169 VKRFYKK-GNTLELHPEHPMMKPIVLQGEQDEVRIIGKV 206


>gi|66047830|ref|YP_237671.1| peptidase [Pseudomonas syringae pv. syringae B728a]
 gi|63258537|gb|AAY39633.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Pseudomonas
           syringae pv. syringae B728a]
          Length = 229

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 20/225 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    ++K +E   ++ E   ++   +A + G+ P +             R P  E I +
Sbjct: 11  MIRRMNRKWYEVARQVMETQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINR 65

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L      I          G    +   +    Y  P  S                    
Sbjct: 66  FLTELGLPILTTSIPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PY 119

Query: 121 PEIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-I 173
           P   S    I  Y  + +      +  SM         +G ++++++ I+   G  ++  
Sbjct: 120 PAGYSDTFEISDYKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAK 179

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            P + +   K L+        L  LN  YP   V   + + I  I
Sbjct: 180 LPESNEATFKKLVED-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 222


>gi|145588605|ref|YP_001155202.1| SOS-response transcriptional repressor, LexA [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047011|gb|ABP33638.1| SOS-response transcriptional repressor, LexA [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 239

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 20/218 (9%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +    +I E I +  +   L P  + +A + G              E   R      
Sbjct: 16  PKLTPRQSEILELITKAIDESGLPPTRAEIATQLGFASA-------NAAEEHLRAL---- 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K          + + +P    +T    +     L             G    G+    
Sbjct: 65  AKKGYIELTPGTSRGIRIPQRFNQTHHTNKYRQMSLPSGALQQLTLPLIGRVAAGSPIMA 124

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           V   E + P +     +  D   K +  SM       GD L +    +V  GD ++ +  
Sbjct: 125 VEHIEKQVPIDPSLFSKGADYLLKVKGMSMRDAGILDGDYLAVRKTTEVRNGDIVVARLD 184

Query: 177 TGDIVAKVLISR---RGRSIDLMSLNCCYPVDTVEMSD 211
             ++  K    +    G  I+L + N  +    V+   
Sbjct: 185 -DEVTVKRWQQKKTANGMVIELQAENPDFKNIVVDSRQ 221


>gi|307545562|ref|YP_003898041.1| LexA repressor [Halomonas elongata DSM 2581]
 gi|307217586|emb|CBV42856.1| LexA repressor [Halomonas elongata DSM 2581]
          Length = 221

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62
            + +++ I +        P  + ++R  G                  R P+  E   + L
Sbjct: 9   QQNVFDFIVKTMNELGYPPTRAEISRALGF-----------------RSPNAAEEHLRAL 51

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                                E   +         + S G    G    G+        +
Sbjct: 52  ERKGVIRVIRGTSRGIRLPAQEADPQAAGDTATDSTPSQGLPIIGEVAAGSPILATEHID 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    Y     D   + +  SM  +   +GD+L ++   ++  G  ++ +    ++ 
Sbjct: 112 RYCPLPPEYFTPRADYLLRVRGLSMQNIGILEGDLLAVHRTERIRDGQIVVAR-LEEEVT 170

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEW 214
            K    + G  + L + N  +    V++   ++E 
Sbjct: 171 VKRFHRQ-GHRVVLEAENPDFAPIEVDLRHQELEI 204


>gi|28867799|ref|NP_790418.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28851034|gb|AAO54113.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 215

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 20/212 (9%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++ E   ++   +A + G+ P +             R P  E I ++L      I    
Sbjct: 10  RQVMETQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRLLGELGLPILATS 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--Y 131
                 G        +    Y  P  S                    P   S    I  Y
Sbjct: 65  IPSSEPGMQNVAPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDY 118

Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186
             + +      +  SM         +G ++++++ I+   G  ++   P + +   K L+
Sbjct: 119 KAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLV 178

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                   L  LN  YP   V   D + I  I
Sbjct: 179 ED-AGRYFLKPLNPAYPTLPVT-EDCKLIGVI 208


>gi|239815617|ref|YP_002944527.1| LexA repressor [Variovorax paradoxus S110]
 gi|259494481|sp|C5CKV7|LEXA_VARPS RecName: Full=LexA repressor
 gi|239802194|gb|ACS19261.1| SOS-response transcriptional repressor, LexA [Variovorax paradoxus
           S110]
          Length = 227

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 13/209 (6%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I + I     R    P  + +A + G              E   +  + + + ++++
Sbjct: 11  QQQILDLIQSAIARTGAPPTRAEIANELGFKSA-------NAAEEHLQALARKGVIELVS 63

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            T+  I    D   S   +  ++  +   L  P          G    G+        + 
Sbjct: 64  GTSRGIRLKGDALRSLNESRHREGGQFS-LSLPGMSQLALPLIGRVAAGSPILAQEHVDQ 122

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +  D   K +  SM       GD+L + +  +   G  ++ +    ++  
Sbjct: 123 TYYVENTLFQRQPDYLLKVRGMSMRDAGIMDGDLLAVQATKEARNGQIVVAR-LGDEVTV 181

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L     + I+L + N  YP   V+  +
Sbjct: 182 KRLKR-NKQVIELHAENPDYPTIVVQPGE 209


>gi|169633405|ref|YP_001707141.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii SDF]
 gi|169152197|emb|CAP01101.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii]
          Length = 254

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 74/255 (29%), Gaps = 55/255 (21%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + + + I  +     LT   LA+  G+   +    ++         P  + + K
Sbjct: 1   MKKL--ETMGQRIRALRREKKLTQGDLAKIVGVSAPNVTGWEKDAY-----APKADPLSK 53

Query: 61  ILAATNETI-------------------------------------CQLLDLPFSDGRTT 83
           + A    +                                       + +    +  +  
Sbjct: 54  MAAYFGVSTSYITNGDESGPQLDSGGAQLNVLDIEAFKQKYNIPDSEEAVKFVQTPTKPF 113

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
             +++ +P+  +   G  G+F    +        V            +    +    K  
Sbjct: 114 PIQKRYVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPT----------HTAGPRAYGIKGT 163

Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
             SM P  R G  ++ +   ++   + + +  + G    K  I      + L+++N    
Sbjct: 164 GDSMFPAIRNGWYVVCDPDAELVPTEFVQVCLKDGRCTIKEFIGIHNGVLSLIAVNGG-E 222

Query: 204 VDTVEMSDIEWIARI 218
               EM ++E IA I
Sbjct: 223 RFFFEMDEVESIAAI 237


>gi|289647504|ref|ZP_06478847.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 202

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E +  E  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEARPDESSLPVI-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +   + +   +    SM  +    GD+L +++  +V  G  ++ + 
Sbjct: 94  AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREVRNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ D
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187


>gi|294678447|ref|YP_003579062.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294477267|gb|ADE86655.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB
           1003]
          Length = 249

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 59/241 (24%), Gaps = 41/241 (17%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    +   L+   L    G+     +  +    E     PS   +  +      +   
Sbjct: 8   RLSSWRKEQKLSQRALGSVLGVSQGYISDIESGRSE-----PSRNFLQALTERFGVSADW 62

Query: 72  LLDLPFSDG-----------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +L                             +       +                 G+ 
Sbjct: 63  ILYGVGLPQTERSGGFEARKPGKRIEPPDLGRPLSGDFRFADEDFFLIERMDLDVSAGHG 122

Query: 115 W--------NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                      + +P      + +          + +  SM P    G +++L+ +++  
Sbjct: 123 IVPIPGAETERIALPRSMFLRSRL--TPDFTVLVRVKGDSMAPTIPDGALILLDCSVRRV 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRR------GRSIDLMSLNCCYPVDTV---EMSDIEWIAR 217
               +      G    K L+          + + L+S N  +P   +   EM  +    R
Sbjct: 181 DRAGIFAFSLDGQSYVKRLVPSGTMADGRPQMLMLVSDNPAFPPVALAGPEMDRLLIAGR 240

Query: 218 I 218
           +
Sbjct: 241 V 241


>gi|34556743|ref|NP_906558.1| hypothetical protein WS0307 [Wolinella succinogenes DSM 1740]
 gi|34482457|emb|CAE09458.1| hypothetical protein WS0307 [Wolinella succinogenes]
          Length = 218

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 5/213 (2%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I E +  +          L R   L     +      ++ R + P  E +        
Sbjct: 4   NEIIEKLKDILSEEKEGQKVLDRDVALAL-HIHPQSFACMKSRQKIPYEEILAFCAKRKI 62

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                  +        T  +   I       + +GG   +           + +      
Sbjct: 63  SANWLFYNQAPESLIDTTNQYCYIRYFSQVHASAGGGAFNDT----EACERIKLDAFWVE 118

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             G      Q         SM P    GD++ ++   +      + +      I  K L 
Sbjct: 119 RLGGEKEIKQIEAIAVTGDSMEPTLEDGDLIFIHRQKRQISKGGIFVIQTPHGIFVKRLQ 178

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            R    +D++S N  YP  T+E   IE I R++
Sbjct: 179 ERLDGGVDILSDNSLYPTQTLERDGIEVIGRVV 211


>gi|325924503|ref|ZP_08186022.1| SOS-response transcriptional repressor, LexA [Xanthomonas gardneri
           ATCC 19865]
 gi|325544998|gb|EGD16333.1| SOS-response transcriptional repressor, LexA [Xanthomonas gardneri
           ATCC 19865]
          Length = 213

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + +AR  G       +               E++ +  
Sbjct: 6   TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  +       P+             +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGRGTQSRTPPASEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|120601667|ref|YP_966067.1| phage repressor [Desulfovibrio vulgaris DP4]
 gi|120561896|gb|ABM27640.1| putative phage repressor [Desulfovibrio vulgaris DP4]
 gi|311234720|gb|ADP87574.1| putative phage repressor [Desulfovibrio vulgaris RCH1]
          Length = 244

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 55/241 (22%), Gaps = 28/241 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T     ++ + I             LA  AG+   +    K        R+PS  ++ ++
Sbjct: 7   TVTDGDELQQFIAEAIALVG-GVRALASIAGVSERTVYAWKNGE-----RFPSRTNLNRL 60

Query: 62  LAATNETICQ---------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                    Q                    +   ++                       G
Sbjct: 61  SEHLEHLSRQGYSPSAPQPHWRALRERMPGSYAPQQPDDTDRLTEEFVFVDKAEARPSAG 120

Query: 113 NKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                                             +    SM      GD++++N      
Sbjct: 121 GGSLETSARAETRYAFRLDWVLQKTPTSEGLRMMEVAGRSMENTLHNGDLVLVNERDVHL 180

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS----DIEWIARILW 220
             DR+ +     +I  K               N    Y   +++      D E I R+LW
Sbjct: 181 VEDRVYVVRVHDEIYVKRFAR-TPGCYHFRGDNRELAYQDISIDPRDENLDWEVIGRVLW 239

Query: 221 A 221
           A
Sbjct: 240 A 240


>gi|254362146|ref|ZP_04978263.1| possible bacteriophage transcriptional regulator [Mannheimia
           haemolytica PHL213]
 gi|153093712|gb|EDN74659.1| possible bacteriophage transcriptional regulator [Mannheimia
           haemolytica PHL213]
          Length = 243

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 21/235 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESI 58
           M      + ++ + R+ +    + S LA + G+  +   + K       G+ +    +  
Sbjct: 1   MRPLKEIR-YDNLLRLIDEAK-STSDLANRTGIAVSYLLQIKNKNAIQNGKPKGIGDKIA 58

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----------- 107
            K+    N+    L  +          +             +                  
Sbjct: 59  AKLEDGMNKPRGWLDQIHSEQSNLINSRIGNEEQKLQEQDLNDFIIIDVLDVSASAGFGS 118

Query: 108 -VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                        VPE         A             SM P +  GD+L ++ ++   
Sbjct: 119 SSELVEVVNQMRYVPEQFYSLFRNMA-PRYIRIINLSGDSMYPTFSSGDMLFVDISVNEF 177

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARI 218
            GD + +    G +  K L    G  I ++S N  Y   ++       +   AR+
Sbjct: 178 TGDGVYVFTYKGHLYVKRLQ-NTGDQILVISDNKLYEKWSITEENQDQLFIHARV 231


>gi|150396878|ref|YP_001327345.1| putative phage repressor [Sinorhizobium medicae WSM419]
 gi|150028393|gb|ABR60510.1| putative phage repressor [Sinorhizobium medicae WSM419]
          Length = 233

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 38/241 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT   H +I E +  M    +L+P   + KAGL   +  K        R++ P+ +++  
Sbjct: 1   MTETIHDRIKERLRIM----DLSPQAASMKAGLSKDTLRKLL----ANRDQLPTGKTLSA 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP---------- 110
           +  A   +   LL    S      + ++E+ +       +                    
Sbjct: 53  LAPALEVSEQWLLTGQDSGPSQPVQPQQEVRVANIELPTNSAMPKDVPVLGTAAGSHHRG 112

Query: 111 ----TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
               T +  + V  P        IY+          + +SM P Y +GD++ ++      
Sbjct: 113 AFQLTSDAIDYVRRPPALMGTKDIYS-------LYVEGSSMEPQYWQGDLVYVHPHKPAR 165

Query: 167 CGDRLLIKPRTG--------DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            GD ++++ R G        +    + + R G ++ +   N       ++   I    ++
Sbjct: 166 SGDAVVVQCRIGDEEPDGTVEATIGLYVRRTGEALIIRKHNP-PAEIEIKNEAIISYHKV 224

Query: 219 L 219
           L
Sbjct: 225 L 225


>gi|319757788|gb|ADV69730.1| phage repressor protein [Streptococcus suis JS14]
          Length = 229

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 65/223 (29%), Gaps = 23/223 (10%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +           S +A K G++  S++K +        +  S  +I KIL         
Sbjct: 6   RLKEKRIERKFNQSEIAYKLGINRASYSKWESGKSIPNQKNLS--AIAKILDVPVTYFES 63

Query: 72  LLDLPFSDGRTTEKKEKEIPLL-----------YFPPSGSGGFFDSGVFPTGNKW---NT 117
             ++  +  + T   + +                  P  S           G      + 
Sbjct: 64  EYNIVNNYLQLTPGNQLKAEDYVEELLLSQQTSNVIPLFSVQVLSDIQLSAGLGEGFFDE 123

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                + S           D     +  SM P+Y+ G++ ++ S      G  +      
Sbjct: 124 FETETVYSDEEQY----GYDIAAWIEGDSMEPVYKSGEVALIRSNGFDYDG-AVYALSWN 178

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
             +  K L         ++SLN  YP   +    + + +  ++
Sbjct: 179 DSVYIKKLYRDEDG-FRMVSLNKNYPEKFIPYEDEPKIVGLVV 220


>gi|213971961|ref|ZP_03400059.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv.
           tomato T1]
 gi|213923276|gb|EEB56873.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv.
           tomato T1]
          Length = 148

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG-IYAIQTQDTRHKT 142
            +    I + +   + S G  +            + V        G  ++          
Sbjct: 1   MQSLGFITIPHLDVAASMGSGNVPPDSQIEVIKDITVHLDWLKTQGLAFSRIENLAIITG 60

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM   +R GD L+++  I     D + +    GD+  K L    G ++ ++S N  Y
Sbjct: 61  DGDSMDGTFRDGDSLLVDRGITEIRTDAVYVFTLDGDLYIKRLQRMTGGALRMISDNPLY 120

Query: 203 PVDTVEMSD---IEWIARI--LW 220
           P   +E +D   +   AR+  +W
Sbjct: 121 PAIIIEGADLTKVHIQARVLLVW 143


>gi|15676461|ref|NP_273600.1| putative repressor protein [Neisseria meningitidis MC58]
 gi|7225782|gb|AAF40984.1| putative repressor protein [Neisseria meningitidis MC58]
 gi|261393074|emb|CAX50669.1| putative transcriptional regulator [Neisseria meningitidis 8013]
 gi|316985422|gb|EFV64370.1| peptidase S24-like family protein [Neisseria meningitidis H44/76]
 gi|325139792|gb|EGC62325.1| putative transcriptional regulator [Neisseria meningitidis CU385]
 gi|325200756|gb|ADY96211.1| putative transcriptional regulator [Neisseria meningitidis H44/76]
          Length = 228

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    +     
Sbjct: 18  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA----- 132
             K+                            G     +        +            
Sbjct: 73  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N        D L +     +++ K L    G  
Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 191

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           I+++S N  YP   + +     D+E I R+ W
Sbjct: 192 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 223


>gi|330970822|gb|EGH70888.1| peptidase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 203

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 24/211 (11%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL- 75
            E   ++   +A + G+ P +             R P  E I + L      I       
Sbjct: 1   METQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55

Query: 76  --PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIYA 132
             P      +  +               G +   V P    + +T  + +        Y 
Sbjct: 56  SEPGMHNVESTVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISD--------YK 107

Query: 133 IQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLIS 187
            + +      +  SM         +G ++++++ I+   G  ++   P + +   K L+ 
Sbjct: 108 AKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVE 167

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                  L  LN  YP   V   + + I  I
Sbjct: 168 D-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196


>gi|261369111|ref|ZP_05981994.1| repressor protein CI [Subdoligranulum variabile DSM 15176]
 gi|282568739|gb|EFB74274.1| repressor protein CI [Subdoligranulum variabile DSM 15176]
          Length = 215

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 59/213 (27%), Gaps = 13/213 (6%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112
              I K+                 +  + +   +             G F      F  G
Sbjct: 66  LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +    V   +  S       ++       T      P +  G +++++    V  GD  +
Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
            +    +   K LI   G+   L  LN  YP+ 
Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMI 214


>gi|254714851|ref|ZP_05176662.1| Repressor protein CI [Brucella ceti M644/93/1]
 gi|261322650|ref|ZP_05961847.1| lambda repressor [Brucella ceti M644/93/1]
 gi|261295340|gb|EEX98836.1| lambda repressor [Brucella ceti M644/93/1]
          Length = 225

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 59/213 (27%), Gaps = 13/213 (6%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112
              I K+                 +  + +   +             G F      F  G
Sbjct: 66  LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +    V   +  S       ++       T      P +  G +++++    V  GD  +
Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
            +    +   K LI   G+   L  LN  YP+ 
Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMI 214


>gi|298370234|ref|ZP_06981550.1| repressor protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281694|gb|EFI23183.1| repressor protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 231

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 24/215 (11%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL         +
Sbjct: 18  QAKIAADIDMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGEPFPHS 72

Query: 84  E-------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN------TVGVPEIRSPHNGI 130
                        +                     G+            +   R      
Sbjct: 73  HLATESSATISDTLGNPVDIDEFVFIPRYDIQAAAGHGRLAGNEKPMFAMAFRRDWIENY 132

Query: 131 YAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                   +    +  SM  +   GD +++N        D L +     +++ K L    
Sbjct: 133 VTRSTKNLSVISVKGDSMEGVLNDGDSILINHGETT-PRDGLYVLRINENLLVKRLQVMP 191

Query: 190 GRSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           G  I+++S N  YP   +++     D+  I R+ W
Sbjct: 192 GGIINVISANDAYPTFEIDLNHLTDDVAIIGRVEW 226


>gi|172040564|ref|YP_001800278.1| LexA repressor [Corynebacterium urealyticum DSM 7109]
 gi|171851868|emb|CAQ04844.1| LexA repressor [Corynebacterium urealyticum DSM 7109]
          Length = 284

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 63/222 (28%), Gaps = 20/222 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSF--NKSKRFGIEGRNR----WPSTES 57
            ++I E I          PS   +A   GL  TS    + K+   +G  R     P    
Sbjct: 67  QRRILEVIKDSTVLRGYPPSIREIADAVGLQSTSSVSYQLKQLEEKGYLRREDNKPRAFD 126

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +      TN  +   +               + P   + P        + +    N    
Sbjct: 127 VRGYEDHTNPGLVTPVPRKQPKPTPA-PVSDDRPAATYVPVVGQIAAGNPILAEQNIEAQ 185

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +P      +       +    +    SM        D +++ S    + GD +     
Sbjct: 186 FPLPAELVGTSD------ELFLLQVVGESMRDAGIYDSDWVVVRSQPTADQGDFVAAMID 239

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            G+   K L       + L+  N  +       ++ + + ++
Sbjct: 240 -GEATVKELHHDEDG-VWLLPHNDLFEPI--AGNEAQILGKV 277


>gi|117925395|ref|YP_866012.1| SOS mutagenesis protein UmuD [Magnetococcus sp. MC-1]
 gi|117609151|gb|ABK44606.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Magnetococcus sp. MC-1]
          Length = 238

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 10/220 (4%)

Query: 8   KIWEAIDRMAERHNLTP--SGLARKAGLDPTSFN-KSKRFGIEGRNR-WPSTESIFKILA 63
           ++W+ +      H L P  + L+ + G+ P S + + +    +G  R  P        L 
Sbjct: 12  RLWQTLCAHITTHGLPPTVAELSAQLGIKPPSVHAQLQALARKGWLRHTPHKARSLTPLD 71

Query: 64  ATNETICQLLDLPFSDGRTTE--KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV- 120
              + +    +    + R                  +             G         
Sbjct: 72  EAGQPLLHPKESTPMESRPIMSAPPRVTQRFRPAEQARFTIPLAGSRVAAGFPSPADDFV 131

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                 +  +          +    SM       GDIL+++ ++Q   G  ++     G+
Sbjct: 132 EAQLDLNQHLVKHPAATFFVRVAGESMIEAGIHPGDILVVDRSLQPESGQIVIAVLD-GE 190

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +  K L  R    + LM  N  +    V       I  ++
Sbjct: 191 LTVKRLEKR-AGKLFLMPANRNFTPIEVGAEADLLIWGVV 229


>gi|290581291|ref|YP_003485683.1| putative transcriptional regulator [Streptococcus mutans NN2025]
 gi|254998190|dbj|BAH88791.1| putative transcriptional regulator [Streptococcus mutans NN2025]
          Length = 228

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 15/218 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQ 71
           +    ++  L+ +  A K G+   S+   +    +   +       + K+ +A   +   
Sbjct: 7   LKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYFLSQHD 66

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTVGVPE 122
           ++++      + + K  +                      +        G  ++     +
Sbjct: 67  IVEIYTRLNESNKTKTLKYSQHLLEQQDKERNLMKNKRYPYRVYEKLSAGTGYSY--FGD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P++  G++ ++        G  +      G    
Sbjct: 125 GNFDTVFYDEEIDHDFASWIFGDSMEPIFLNGEVALIKQTGFDYDG-AIYAIDWDGQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           K +       + L+SLN  Y        +    I  I+
Sbjct: 184 KKVYREETG-LRLVSLNKKYADKFAPYDENPRIIGLIV 220


>gi|1196926|gb|AAA88585.1| unknown protein [Streptococcus mutans]
          Length = 228

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 15/218 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQ 71
           +    ++  L+ +  A K G+   S+   +    +   +       + K+ +A   +   
Sbjct: 7   LKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYFLSQHD 66

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTVGVPE 122
           ++++      + + K  +                      +        G  ++     +
Sbjct: 67  IVEIYTRLNESNKTKTLKYSQHLLEQQDKKRNLMKNKRYPYRVYEKLSAGTGYSY--FGD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                         D        SM P++  G++ ++        G  +      G    
Sbjct: 125 GNFDTVFYDEEIDHDFASWIFGDSMEPIFLNGEVALIKQTGFDYDG-AIYAIDWDGQTYI 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           K +       + L+SLN  Y        +    I  I+
Sbjct: 184 KKVYREETG-LRLVSLNKKYADKFAPYDENPRIIGLIV 220


>gi|59801770|ref|YP_208482.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae FA 1090]
 gi|59718665|gb|AAW90070.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae FA 1090]
          Length = 236

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    +     
Sbjct: 26  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 80

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134
             K+                            G          + +     + I+     
Sbjct: 81  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVGHEEPVFTMAFRRHWIENYVTR 140

Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N        D L +     +++ K L    G  
Sbjct: 141 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 199

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           I+++S N  YP   + +     D+E I R+ W
Sbjct: 200 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 231


>gi|66046512|ref|YP_236353.1| LexA repressor [Pseudomonas syringae pv. syringae B728a]
 gi|63257219|gb|AAY38315.1| Peptidase S24, LexA repressor [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972034|gb|EGH72100.1| LexA repressor [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 202

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G    +                + E
Sbjct: 1   MIKLTPRQAEILGFIKRCLEDNGFPPTRAEIAQELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E ++ +  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEARQDDSSLPVI-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +   + +   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V++ D
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 187


>gi|332361288|gb|EGJ39092.1| phage transcriptional repressor [Streptococcus sanguinis SK1056]
          Length = 230

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 24/226 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +       + + S LA    ++  S+NK +        +  S  ++ +IL       
Sbjct: 4   GSRLKECRMEKHYSQSELANLLKINRASYNKWETGKSVPNQKNLS--ALARILDVPTTYF 61

Query: 70  CQLLDLPFSDGRTTEKK------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115
                +  +  + + +             + +       P  +           G     
Sbjct: 62  ESEYKIVNTYLQLSTENQGKVDEYAEGLLQAQQSHDKVVPLFAVEVLSDIALSAGLGESL 121

Query: 116 -NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
            +      + +           D     +  SM P+Y  G++ ++ ++     G  +   
Sbjct: 122 FDEYDTETVYAEEEQY----GYDIAAWIKGDSMEPIYLDGEVALIRASGFDYDG-AVYAL 176

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                +  K L         ++SLN  YP   +   D    +  ++
Sbjct: 177 SWNDSVYIKKLYREEHG-FRMVSLNDNYPDKWIPYEDNPRIVGLVV 221


>gi|302386388|ref|YP_003822210.1| transcriptional repressor, LexA family [Clostridium saccharolyticum
           WM1]
 gi|302197016|gb|ADL04587.1| transcriptional repressor, LexA family [Clostridium saccharolyticum
           WM1]
          Length = 206

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 70/220 (31%), Gaps = 35/220 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
             ++I E I     +    P+   +     L  TS   +  +    +G  R   T+    
Sbjct: 9   KQQEILEYIKETILKKGYPPAVREICEAVCLKSTSSVHSHLETLEEKGYIRRDPTK---- 64

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                     + +++     + T ++   +PLL    +G        ++   N  N   +
Sbjct: 65  ---------PRTIEIIDDCFQLTRREVVNVPLLGTVAAGQP------LYAEENIENYYPI 109

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P    P+        +    K +  SM+     +GD +I+      + G+ ++       
Sbjct: 110 PADLLPN-------AETFMLKVKGNSMINAGILEGDQIIVEHCPTAHNGEIVVAL-VEDS 161

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +     L   N       V+   +E + +++
Sbjct: 162 ATVKRFFKEK-GHYRLQPENDSMDPIIVDN--VEILGKVI 198


>gi|325690230|gb|EGD32234.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK115]
          Length = 225

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NLT + + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLTQASIYQELGISRKAYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSALYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|24374193|ref|NP_718236.1| prophage MuSo2, Cro/CI family transcriptional regulator [Shewanella
           oneidensis MR-1]
 gi|24348706|gb|AAN55680.1|AE015706_8 prophage MuSo2, transcriptional regulator, Cro/CI family
           [Shewanella oneidensis MR-1]
          Length = 248

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 21/224 (9%)

Query: 9   IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I    DR+ E    ++    A+K GL                  +PS + +  +   +N+
Sbjct: 25  IMRFPDRLKESIGDISIRSFAKKCGLSEGVMRNYLAGKT-----YPSLDKLALMAEVSNK 79

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---------WNTV 118
            +  L+     +     +   +  +       +           G+             +
Sbjct: 80  PLDWLVAGTEHNFNELNEPGSKYVIGINLEEYALIPGYRVQVSAGHGALNCDQQDPVRYL 139

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                   + G    + +      +  SM P     D L+++          + I     
Sbjct: 140 AFRRKWLKYRGF--EEHELAIVWAKGDSMEPTIHSNDTLVVHLGRNSPADGHIYIFRNGD 197

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
           D+  K   +    S  L+S N  Y    +   +    E + +++
Sbjct: 198 DLFVKRYQNAF-GSWRLISDNPVYDKLDIPKHEQHQFEVVGQVV 240


>gi|71736548|ref|YP_272952.1| prophage PSPPH01, Cro/CI family transcriptional regulator
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557101|gb|AAZ36312.1| prophage PSPPH01, transcriptional regulator, Cro/CI family
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 215

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 20/212 (9%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++ E   ++   +A + G+ P +             R P  E I + L      I    
Sbjct: 10  RQVMETQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTS 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--Y 131
                 G    +   +    Y  P  S                    P   S    I  Y
Sbjct: 65  IPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDY 118

Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186
             + +      +  SM         +G ++++++ I+   G  ++   P + +   K L+
Sbjct: 119 KAKGKAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLV 178

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                   L  LN  YP   V   + + I  I
Sbjct: 179 ED-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 208


>gi|46581037|ref|YP_011845.1| transcriptional regulator [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450458|gb|AAS97105.1| transcriptional regulator, putative [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 257

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 55/241 (22%), Gaps = 28/241 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T     ++ + I             LA  AG+   +    K        R+PS  ++ ++
Sbjct: 20  TVTDGDELQQFIAEAIALVG-GVRALASIAGVSERTVYAWKNGE-----RFPSRTNLNRL 73

Query: 62  LAATNETICQ---------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                    Q                    +   ++                       G
Sbjct: 74  SEHLEHLSRQGYSPSAPQPHWRALRERMPGSYAPQQPDDTDRLTEEFVFVDKAEARPSAG 133

Query: 113 NKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                                             +    SM      GD++++N      
Sbjct: 134 GGSLETSARAETRYAFRLDWVLQKTPTSEGLRMMEVAGRSMENTLHNGDLVLVNERDVHL 193

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS----DIEWIARILW 220
             DR+ +     +I  K               N    Y   +++      D E I R+LW
Sbjct: 194 VEDRVYVVRVHDEIYVKRFAR-TPGCYHFRGDNRELAYQDISIDPRDENLDWEVIGRVLW 252

Query: 221 A 221
           A
Sbjct: 253 A 253


>gi|315167306|gb|EFU11323.1| peptidase S24-like domain protein [Enterococcus faecalis TX1341]
          Length = 273

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 75/243 (30%), Gaps = 34/243 (13%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +    +  N++   +A + G+  ++  + ++  IE         +I KIL  T E
Sbjct: 33  NVGERMKLRRKELNISADKIANELGVSRSTIFRYEKGDIEKLPTE-RLITIAKILKTTPE 91

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN---------KWNTV 118
            +                 + +          +    +     T N            TV
Sbjct: 92  ELMGWNTSNDFSSIEAIYNKLDTTRKQKVCRYAEHQLEEQKRNTSNNKVIAFMPTNTTTV 151

Query: 119 GVPEIRSPHNGIY-------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
            +    S   G +             A    D   +    SM P ++ G+I+ +   + +
Sbjct: 152 ELSGRLSAGGGAFNDKGCIEIVEVGSAPSQYDLAFQVCGDSMYPTFQDGEIVFVKETMDI 211

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSDI-EWIA 216
             G         G+   K +    G  + L+SLN          YP    +  D+   I 
Sbjct: 212 YNGQIG-AIEINGEAFIKKMY-LEGTRLRLVSLNTEIDEDGNRLYPDFYADELDVLYVIG 269

Query: 217 RIL 219
           R++
Sbjct: 270 RVI 272


>gi|269214789|ref|ZP_05987153.2| putative repressor protein [Neisseria lactamica ATCC 23970]
 gi|269209033|gb|EEZ75488.1| putative repressor protein [Neisseria lactamica ATCC 23970]
          Length = 236

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F +    G       P +E++ KI      +I  LL    S     
Sbjct: 26  QAKIASDIEMTIAGFGRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPDE 80

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134
             K+                            G          + +     + I+     
Sbjct: 81  APKKSFAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTC 140

Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N +         +++     ++ K L    G  
Sbjct: 141 DVKNLSVISVKGDSMEGVLNDGDSILVNHSENTPKDGLYVLRINEN-LLVKRLQIVPGGI 199

Query: 193 IDLMSLNCCYPVDTV----EMSDIEWIARILW 220
           I+++S N  YP   +       D+E I R+ W
Sbjct: 200 INVISANEAYPAFEINLNHPADDVEIIGRVEW 231


>gi|300772908|ref|ZP_07082777.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759079|gb|EFK55906.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 259

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 63/221 (28%), Gaps = 16/221 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + ++  LT    A    +   S    +    E     P  E + KI    + 
Sbjct: 3   NIASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAE-----PKYELLKKIAEYFDL 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP-----PSGSGGFFDSGVFPTG--NKWNTVGV 120
           T+ +L +    D      +     L                        G  N +     
Sbjct: 58  TMDELANDVIDDKWKPTPRSNASNLRVLSVTVDQQDRENIELVPVKASAGYLNGYGDPEY 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTG 178
                  +     Q      + +  SMLPL     I+   + +   +  G   +I  R  
Sbjct: 118 VAELPKFSLPMFNQGTYRAFEIKGDSMLPLPSGSVIIGEYVENWHDIKPGQTYIIVSREE 177

Query: 179 DIVAKV--LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            +V K      +  + + L+S N  Y    V   DI  + +
Sbjct: 178 GVVYKRIAFKYKEEKGLKLVSDNKTYEAYWVGSEDILEVWK 218


>gi|325677864|ref|ZP_08157506.1| repressor LexA [Ruminococcus albus 8]
 gi|324110418|gb|EGC04592.1| repressor LexA [Ruminococcus albus 8]
          Length = 194

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 48/183 (26%), Gaps = 6/183 (3%)

Query: 38  FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           F   K    EG    P+   +       + +         +D    EK + +   +    
Sbjct: 11  FEFIKSRVEEGYP--PTVREVCNYFGFKSTSTAHRYIKSLTDKGFLEKGDNQNRAIRLVG 68

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
                    G    G     +                +     K +  SM+      GD+
Sbjct: 69  GSGMLIPLVGTVTAGTPITAIEYVSEYISFQPARNYSSPLFALKVRGESMINAAILDGDL 128

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +++      + G+ ++      D   K           L   N       V+   ++ + 
Sbjct: 129 VVVEQTPVASNGEIVVAMVDGQDATVKTFYK-EDGHFRLQPENDHMEPIIVDS--VDILG 185

Query: 217 RIL 219
           +++
Sbjct: 186 KVV 188


>gi|226943569|ref|YP_002798642.1| LexA repressor [Azotobacter vinelandii DJ]
 gi|259494469|sp|C1DQZ4|LEXA_AZOVD RecName: Full=LexA repressor
 gi|226718496|gb|ACO77667.1| SOS transcriptional repressor, LexA [Azotobacter vinelandii DJ]
          Length = 202

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +AR+ G    +                + E
Sbjct: 1   MHKLTPRQVEILAFIKRCLEENGYPPTRAEIARELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K +A                   +E             S        G    G    
Sbjct: 45  EHLKAMARKGAIEMTPGASRGIRIPGSE-----------VESEPTSLPIVGRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +  +     D   + +  SM  +    GD+L +++  + + G  ++ + 
Sbjct: 94  AQQHIEETCQIDPGFFHPRADYLLRVRGMSMKDVGIYDGDLLAVHTCREAHNGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    +++++
Sbjct: 154 N-DEVTVKRFRRD-GDKVWLIAENPEFSPLEIDLTE 187


>gi|226357661|ref|YP_002787401.1| repressor lexA [Deinococcus deserti VCD115]
 gi|226319652|gb|ACO47647.1| putative repressor lexA [Deinococcus deserti VCD115]
          Length = 211

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 34/219 (15%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGL---ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           + + + I +AI R+      TP+ L   A+  GL   + +                  + 
Sbjct: 6   TRTRRLILDAILRLQAED--TPATLGAVAQATGLTKQAVS--------------YQTVLL 49

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +          +   L  +            PL+    +G            G+    V 
Sbjct: 50  REAHYLEPAASRYAPLILTSKARALIGGGGFPLVGEIAAGQP----------GHAEQNVE 99

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR-LLIKPRT 177
                +  + +  ++  D   + +  SM+ +     DI+I+     V  GD  +++ P  
Sbjct: 100 --AYITRLDQVIDMKEGDYLLRVRGDSMIGVGIYPQDIVIVRPNETVPNGDIAVVLLPGE 157

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                K +  +    I L S N  YP  T    D+    
Sbjct: 158 STATLKRVEHQ-NSKITLHSANPDYPPMTFPARDVRIQG 195


>gi|197118143|ref|YP_002138570.1| LexA repressor [Geobacter bemidjiensis Bem]
 gi|226694234|sp|B5EA68|LEXA_GEOBB RecName: Full=LexA repressor
 gi|197087503|gb|ACH38774.1| LexA repressor [Geobacter bemidjiensis Bem]
          Length = 201

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 39/226 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ + I R  E     P+   +A + G+                     T 
Sbjct: 1   MEQLTARQTEVLQIITRHLETCGYPPTLREIAAQLGIS-------------------GTL 41

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K L A  +          + G T   + +   L         G     +        
Sbjct: 42  GVMKHLEALEKKGYLRRQEGSTRGITLCNQSQAASLP-IVGVVRAGLLHPAIQDI----- 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +            + +  SM+     +GD+ ++      +  D ++   
Sbjct: 96  -----EGHFAIDRSQLASGGAFFLRVKGDSMVHAHIVEGDLALVRPQPHASNRDIVVAMV 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE--MSDIEWIARIL 219
             G+   K         I L   N  Y    +E    ++  + +++
Sbjct: 151 D-GEATLKRFYR-EADRIRLQPENPNYEPIIIEKGEQEVSIVGKVV 194


>gi|256828866|ref|YP_003157594.1| putative phage repressor [Desulfomicrobium baculatum DSM 4028]
 gi|256578042|gb|ACU89178.1| putative phage repressor [Desulfomicrobium baculatum DSM 4028]
          Length = 209

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 19/213 (8%)

Query: 14  DRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
            R+A+   ++    LA   G++P +           ++R         I AA       L
Sbjct: 8   QRVAKTTGISTQKELAGLLGIEPAAI-------TMAKSRGVPKSWGLSIAAAFGVNPVWL 60

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                   +  +     +P +       GG F+          + +          G   
Sbjct: 61  KTGSGPVYQNEQASTVLVPKVAAKACAGGGSFELSDM----IVDELPFDRSWLSKKG--- 113

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
              +    +    SM P    GD ++++ +      + L +     +I  K +  R    
Sbjct: 114 NPGRMVAMEVIGDSMSPELEPGDNILIDQSQNQVADNNLYVVGLADNIQVKRVQIRP-GL 172

Query: 193 IDLMSLNCCYPVDTVEMSDI---EWIARILWAS 222
           + L S N  Y   T++  +I     I R+LW+S
Sbjct: 173 VVLFSTNQRYSPVTLQGDEIDTLRVIGRVLWSS 205


>gi|227113391|ref|ZP_03827047.1| Repressor protein CII [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 237

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 65/233 (27%), Gaps = 23/233 (9%)

Query: 2   TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
            + + +++  A  +  +     +  N+T   +A + G+   +        I       + 
Sbjct: 5   KTLTREQLEAARKLKALYQSKKKELNVTQYTIADELGISQGAVGHYLNGRI-----ALNV 59

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                        I +       D  +           +      G +        G   
Sbjct: 60  PVASGFSRILQIPISEFSPELARDAASYASTVDSNVAFHGIHDPKGEYPVISWVSAGEWS 119

Query: 116 NTVGVPEIRSPHNGIYAIQTQD----TRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167
             +  P  R   +  Y               +  SM         +G +++++  ++   
Sbjct: 120 EAIE-PYHRRAIDRWYGTTVDCSDSSFWLDVKGDSMTSPVGLSIPEGMVILVDPEVEPIN 178

Query: 168 GDRLLIKPR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G  ++ K     +   K  +   G    L  LN  YP+ T+  +    I  ++
Sbjct: 179 GKLVVAKLDGENEATFKKYVEDAGHKF-LKPLNPQYPLITINGN-CRIIGVVV 229


>gi|254449351|ref|ZP_05062795.1| prophage MuMc02, peptidase, family S24 [gamma proteobacterium
           HTCC5015]
 gi|198261055|gb|EDY85356.1| prophage MuMc02, peptidase, family S24 [gamma proteobacterium
           HTCC5015]
          Length = 230

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 72/222 (32%), Gaps = 14/222 (6%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H++  + +    ER +          G+   +  + ++          S + + ++  A 
Sbjct: 13  HQR-GQRLRSERERLHKNQDEFGAIGGVKRNAQGEYEKGKA------FSVDYMERL-EAI 64

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 +++     G        +       P                +     +   R 
Sbjct: 65  GVDWRYVMNGGDVVGIREPAAAYDYSDYVRLPLFDVQAAAGNGLVAQAEELVEFLSFDRD 124

Query: 126 PHNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                  +        +    SM+P    GD+++LN+       D + +    G ++ K 
Sbjct: 125 WLRNALKVSPKDLVMIEVDGESMVPTLSPGDVIMLNTLDTGVVRDGIYVLLVDGALLVKR 184

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDI-----EWIARILWA 221
           L S  G  ++++S N  +P  T++  D+       I R++W+
Sbjct: 185 LQSLPGGVLNVISDNQAFPTWTMKRDDLGAETQRVIGRVVWS 226


>gi|90406768|ref|ZP_01214961.1| LexA repressor [Psychromonas sp. CNPT3]
 gi|90312221|gb|EAS40313.1| LexA repressor [Psychromonas sp. CNPT3]
          Length = 209

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 64/215 (29%), Gaps = 31/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ + I    E   + P+   LA   G              E   +  + +
Sbjct: 1   MKELTKRQNEVLDVIKACIEETGMPPTRVELANLLGFRSA-------NAAEEHLKALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              KIL+ T+  I  + +   +                       G    G    G+   
Sbjct: 54  GAIKILSGTSRGIRIIAEHKSNQ-----------------VVVDKGLPLVGQVAAGSPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E+    +        D   + Q  SM  +    GD+L ++    VN G  ++ + 
Sbjct: 97  ATEHIEMHYAVDPALFHPRADFLLRVQGESMKNIGIMDGDLLAVHKTQDVNNGQVVVARI 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              ++  K      G ++ L   N  +    V++ 
Sbjct: 157 -EDEVTVKRFYR-EGNAVLLKPENEDFSTIKVDLE 189


>gi|225024556|ref|ZP_03713748.1| hypothetical protein EIKCOROL_01431 [Eikenella corrodens ATCC
           23834]
 gi|224942707|gb|EEG23916.1| hypothetical protein EIKCOROL_01431 [Eikenella corrodens ATCC
           23834]
          Length = 279

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 74/276 (26%), Gaps = 72/276 (26%)

Query: 10  WEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  DRMA+   L     S LAR+AG+ P S  +      +     P   ++ ++  ATN
Sbjct: 6   LQFADRMAKILELFNGNVSELARQAGIAPPSAQRWIDGESD-----PKMSNLLRLADATN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG------------------------ 102
             +  L         +   + KE    Y       G                        
Sbjct: 61  VNLLWLATGQGPMFASGANRLKEPQASYNVSEQDEGRRLLQQRLAETKNTLNNIRKAERG 120

Query: 103 ------------------------FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT--- 135
                                            G+      +P   +       ++    
Sbjct: 121 ESTGEGCAFDVQGRPVDIDEFVFIPLYDVALSAGHGAWADDIPPKSTLAFRRDWLEAFVT 180

Query: 136 ----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
                 +    +  SM  +    D ++++ +      D L       +I  K +      
Sbjct: 181 TDFNNLSVVMVKGDSMAGVLNDKDAILVDHSRTEAS-DGLYALRIGNEIFVKRVQRLP-H 238

Query: 192 SIDLMSLNCCYPVDTVEM-------SDIEWIARILW 220
           ++ + S N  Y    V +       S +  I +++W
Sbjct: 239 ALLVTSENPQYKPFEVPLQNGDNSDSSVSIIGKVVW 274


>gi|162146322|ref|YP_001600781.1| peptidase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784897|emb|CAP54440.1| putative peptidase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 212

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 60/206 (29%), Gaps = 17/206 (8%)

Query: 28  ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKE 87
           A  +G+   S N           R     + F+I  A   ++  L+    S         
Sbjct: 9   AAASGVPLGSLNNYLAG------REMKASTAFRIARACGVSLEWLVTGADSGTGPVPDAA 62

Query: 88  KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
           +    L  P         SG   T      V           ++A + +      +  SM
Sbjct: 63  QFDEYLVVPRYDDELAAGSGSVATDQAPVEVIGVGRSLLPQSVWAARDRLVALTVRGDSM 122

Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
            P    GD++ ++ A +      + +      ++ K L  R    + + S N  Y    V
Sbjct: 123 EPTLSNGDLVFVDRARERLVSGAIYVIRAGEQLLVKRLEQRIDGDLVVTSDNKRYSEQVV 182

Query: 208 EMSDIE-----------WIARILWAS 222
                             + RI+W S
Sbjct: 183 SAEQARQLWNGGNAPATIVGRIVWRS 208


>gi|298485320|ref|ZP_07003412.1| C2 protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160170|gb|EFI01199.1| C2 protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 215

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 63/212 (29%), Gaps = 20/212 (9%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++ E   ++   +A + G+ P +             R P  E I + L      I    
Sbjct: 10  RQVMETQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTS 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--Y 131
                 G    +   +    Y  P  S                    P   S    I  Y
Sbjct: 65  IPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDY 118

Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186
             + +      +  SM         +G ++++++ ++   G  ++   P + +   K L+
Sbjct: 119 KAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGVEPTAGKLVIAKLPESNEATFKKLV 178

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                   L  LN  YP   V   + + I  I
Sbjct: 179 ED-AGRYFLKPLNPAYPTLAVT-EECKLIGVI 208


>gi|295109993|emb|CBL23946.1| SOS-response transcriptional repressor, LexA [Ruminococcus obeum
           A2-162]
          Length = 206

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 51/218 (23%), Gaps = 30/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I + I          P+   +     L  TS                S  S  + L
Sbjct: 9   KQQEILDYIKNEILNRGFPPAVREICEAVNLKSTS----------------SVHSHLEAL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P          G    G     V   E
Sbjct: 53  EKNGYIRRDATKPRAIEIIDDNFNLVRREVVNVPLV--------GTVAAGQPILAVENIE 104

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    Y    Q    K +  SM+      GD +++      + GD ++         
Sbjct: 105 GYFPVPAEYMPNAQSFMLKVKGDSMVNAGIFDGDQVLVKQQASASNGDIVVAL-VEDSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V   DI+ + ++ 
Sbjct: 164 VKTFYK-EDGYYRLQPENDSMDPILVH-GDIQILGKVF 199


>gi|33592856|ref|NP_880500.1| LexA repressor [Bordetella pertussis Tohama I]
 gi|44888097|sp|Q7VRY0|LEXA_BORPE RecName: Full=LexA repressor
 gi|44888099|sp|Q7WCK0|LEXA_BORBR RecName: Full=LexA repressor
 gi|33572504|emb|CAE42080.1| LexA repressor [Bordetella pertussis Tohama I]
 gi|332382269|gb|AEE67116.1| LexA repressor [Bordetella pertussis CS]
          Length = 216

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 24/215 (11%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           T  +   ++I + I +   R    P  + +A+  G                  R P+   
Sbjct: 3   TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 45

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                 A    I                       L  P          G    G+    
Sbjct: 46  DHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILA 105

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               E     +     QT D   K +  SM      +GD+L +  A +   G  ++ +  
Sbjct: 106 SEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-L 164

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             ++  K L  +    I+L+  N  +    V  +D
Sbjct: 165 GDEVTVKRLQRQ-NGRIELLPENPDFAPIVVANTD 198


>gi|194099219|ref|YP_002002310.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999505|ref|ZP_04719429.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae 35/02]
 gi|240014682|ref|ZP_04721595.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae DGI18]
 gi|240017129|ref|ZP_04723669.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae FA6140]
 gi|240081233|ref|ZP_04725776.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae FA19]
 gi|240113444|ref|ZP_04727934.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae MS11]
 gi|240116210|ref|ZP_04730272.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae PID18]
 gi|240118494|ref|ZP_04732556.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae PID1]
 gi|240121204|ref|ZP_04734166.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae PID24-1]
 gi|240126341|ref|ZP_04739227.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128702|ref|ZP_04741363.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae SK-93-1035]
 gi|254494221|ref|ZP_05107392.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|260439977|ref|ZP_05793793.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae DGI2]
 gi|268595316|ref|ZP_06129483.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268597344|ref|ZP_06131511.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268599518|ref|ZP_06133685.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268601872|ref|ZP_06136039.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268604203|ref|ZP_06138370.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268684927|ref|ZP_06151789.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268687089|ref|ZP_06153951.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291043265|ref|ZP_06568988.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398584|ref|ZP_06642762.1| transcriptional regulator, repressor [Neisseria gonorrhoeae F62]
 gi|193934509|gb|ACF30333.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae NCCP11945]
 gi|226513261|gb|EEH62606.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|268548705|gb|EEZ44123.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268551132|gb|EEZ46151.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268583649|gb|EEZ48325.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268586003|gb|EEZ50679.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268588334|gb|EEZ53010.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268625211|gb|EEZ57611.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268627373|gb|EEZ59773.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291012871|gb|EFE04854.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611055|gb|EFF40152.1| transcriptional regulator, repressor [Neisseria gonorrhoeae F62]
 gi|317164754|gb|ADV08295.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 228

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    +     
Sbjct: 18  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134
             K+                            G          + +     + I+     
Sbjct: 73  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVGHEEPVFTMAFRRHWIENYVTR 132

Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N        D L +     +++ K L    G  
Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGI 191

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           I+++S N  YP   + +     D+E I R+ W
Sbjct: 192 INVISANEAYPAFEINLNDLTDDVEIIGRVEW 223


>gi|298209243|ref|YP_003717422.1| hypothetical protein CA2559_13403 [Croceibacter atlanticus
           HTCC2559]
 gi|83849170|gb|EAP87039.1| hypothetical protein CA2559_13403 [Croceibacter atlanticus
           HTCC2559]
          Length = 255

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 16/217 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           +   ++ E +N T +  A   G+  T+    +R   +      S + I ++L   N    
Sbjct: 10  KRFKQIREENNYTQTEFAELLGVKNTT-ADIERGRTK-----LSGKVIAELLRQFNVNPL 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            +         TT   +    +L                     +               
Sbjct: 64  WVFGDSTKKFLTTTNGDVSPRILTVDSDNEDAMVFVNQKAA-AGYPQNIHDVEWYQKLPA 122

Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVA 182
           + I             + +  SM P  +  D ++  +   +   +   + +      ++ 
Sbjct: 123 FNIPLPQYRNATYRGFQVEGDSMTPNLQPEDWVLAKAVSNITDYNINKVHVVVLQDSVLV 182

Query: 183 KVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K L      + + L+S N  Y   TV + DI+ + ++
Sbjct: 183 KKLQKLPDPKKVLLVSFNEEYLPITVNVDDIQELWQV 219


>gi|301382113|ref|ZP_07230531.1| cI repressor protein [Pseudomonas syringae pv. tomato Max13]
 gi|302058983|ref|ZP_07250524.1| cI repressor protein [Pseudomonas syringae pv. tomato K40]
          Length = 262

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 65/223 (29%), Gaps = 29/223 (13%)

Query: 22  LTPSGLARKAGLD--PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ-------- 71
           L  + +    G +   ++ ++       G     + E++ K+    +             
Sbjct: 40  LNQAEVGALCGWNSGQSAVSQYL-----GGKLALNLEALIKLSEVLDFEPEDVSPTLGRG 94

Query: 72  -LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRSPHN 128
                  +     +  +          + +     + +   G   +   V +    +   
Sbjct: 95  VTRKKDSTGQGKNKSVDLSNEEEDGADNYAFIPQYTAMAAAGAGHDNPHVEIRSTLAFKK 154

Query: 129 GIYAI----QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAK 183
              A                 SM P     D+L+++S+  +       +I+      + K
Sbjct: 155 EWLASKGLQPRNLRVIYADGESMWPTINDQDVLLVDSSQVEPVDNGVFVIESGADGTLVK 214

Query: 184 VLISRRGRSIDLMSLNCC---YPVDTV---EMSDIEWIARILW 220
            L+    +   L+S N     YP       E ++ + + R++W
Sbjct: 215 RLVRAPLQQWILLSDNTDKAAYPDRFYLRSESNEHQIVGRVIW 257


>gi|261351066|ref|ZP_05976483.1| repressor protein CI [Methanobrevibacter smithii DSM 2374]
 gi|288860198|gb|EFC92496.1| repressor protein CI [Methanobrevibacter smithii DSM 2374]
          Length = 212

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 58/211 (27%), Gaps = 13/211 (6%)

Query: 2   TSFSHKKI--WEAIDRMAE----RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++     +  + E       L+   +A K G+  +                 + 
Sbjct: 6   KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAAL 65

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--GVFPTG 112
              I K+                 +  + +   +             G F      F  G
Sbjct: 66  LTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLRTFTKG 125

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +    V   +  S       ++       T      P +  G +++++    V  GD  +
Sbjct: 126 DAERWVSTTKKASDSAFWLEVEGNSMTAPT---GSKPSFPDGMLILVDPEQAVEPGDFCI 182

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
            +    +   K LI   G+   L  LN  YP
Sbjct: 183 ARLGGDEFTFKKLIRDSGQVF-LQPLNPQYP 212


>gi|26988281|ref|NP_743706.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983026|gb|AAN67170.1|AE016345_5 transcriptional regulator, Cro/CI family [Pseudomonas putida
           KT2440]
          Length = 283

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 5/190 (2%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
            P+S   + R  +E   +  + E+  +I++A         +  F        +       
Sbjct: 91  TPSSAADAVRKMLEKHGKGLTAEARQRIVSAVEHDPQGEKESGFLIAANPATRGDISIPQ 150

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYR 152
           Y   +  G       +        V + E      G+ Y              SM     
Sbjct: 151 YDIRAAMGHGQVPAEYSE--IIRNVVISEDLLRDKGVNYTAPQSLAIITGWGQSMEGTIN 208

Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
             D +I++  +    G+ + +    GD++ K L  +    + L+S N         + D+
Sbjct: 209 DKDPVIVDRGVNDYAGEGVYVLTWHGDLLIKRLQRKDEDHLWLISDNPHNKDQQARIDDV 268

Query: 213 EWIARI--LW 220
              A++  +W
Sbjct: 269 TIHAKVLLVW 278


>gi|307321404|ref|ZP_07600802.1| putative phage repressor [Sinorhizobium meliloti AK83]
 gi|306892949|gb|EFN23737.1| putative phage repressor [Sinorhizobium meliloti AK83]
          Length = 257

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 76/252 (30%), Gaps = 43/252 (17%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR---------------- 49
           K + E +  + E+  +T    AR AGL+ + F K  +R G   R                
Sbjct: 3   KTVIEKLKEIIEQKGMTYESAARAAGLERSYFRKLFERGGASPRGETLQKIAKGLDVSIT 62

Query: 50  ----------------NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
                              PS E + +++  T  +   +  +P       +         
Sbjct: 63  TLLSTTNKRPVVSSYDPDTPSGEDLEQLM--TIGSETGVRGIPTDASAQIDITGGMGGGG 120

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
               S          F   +  +   +P       G+ A          Q  SM P   +
Sbjct: 121 LSIVSEGVPGRHGMTFAAEHVRDYWRLPPPILSALGLSA--HDVAVFPVQGDSMQPTLDE 178

Query: 154 GDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRG-----RSIDLMSLNCCYPVDTV 207
           GD++ ++      +      +    G +V K +          +++ ++S N  +     
Sbjct: 179 GDVVFIDTRHRWPSPPGLYAVLDEIGGVVVKRIEVSSPPGAEMQTVSVISDNPRHAKKEW 238

Query: 208 EMSDIEWIARIL 219
              ++  + R+L
Sbjct: 239 PAEELFIVGRVL 250


>gi|255531810|ref|YP_003092182.1| helix-turn-helix domain-containing protein [Pedobacter heparinus
           DSM 2366]
 gi|255344794|gb|ACU04120.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366]
          Length = 258

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 62/221 (28%), Gaps = 14/221 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + ++   T    A    +  +     +    E   ++   + I +    T +
Sbjct: 3   NISSNLKYLRKKKGHTQQQFADAMQIKRSLIGAYEEDRAE--PKYDLLKKIAEYFDLTID 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                        +   +      L            +         +            
Sbjct: 61  EFINENINDDWKPKPKSQGSNLRILSISVDKDDNENIEMVPVKASAGYLNGFADPQYIKE 120

Query: 128 NGIYAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTG 178
              + +             +    SMLP  + G +++   +++   V  G+  +I  RT 
Sbjct: 121 LPRFQLPLPFLKHGTFRAFEIVGDSMLP-IQPGSVIVAEYMDNWNDVKTGETYIIVSRTE 179

Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            +V K      +  + + L+S N  Y   TV   DI  I +
Sbjct: 180 GVVYKRAGNRFKENKELKLISDNKIYDPYTVAADDIMEIWK 220


>gi|294492930|gb|ADE91686.1| DNA-binding/peptidase S24 domain protein [Escherichia coli IHE3034]
          Length = 253

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 58/216 (26%), Gaps = 14/216 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------A 64
           + ++ +     ++ + L    G+      +        + R      +   L        
Sbjct: 31  KRLNELMTNKGISVTQLKSLVGVTYEMARRYTIGAA--KPRASVMNKLALALGVSASYLE 88

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                 +      S    T+     I +L    S   G +    +   +    +      
Sbjct: 89  YGVGEREGCKEMASIPNPTKPDVYRIEVLDLSVSAGPGTYMLSDYV--DVLYAIEFTTEH 146

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           +        Q           SM P    GD L ++ +++    D +           K 
Sbjct: 147 ARSLFGNRSQDDIKVMTVNGDSMSPTLVSGDRLFVDISVRNFQTDGVYSFVYGKTFHVKR 206

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIAR 217
           L  + G  + ++S N  Y    ++      +  + +
Sbjct: 207 LQMQ-GNKLAVLSDNPAYEKWYIDEKSQDQLYVMGK 241


>gi|328957390|ref|YP_004374776.1| LexA repressor [Carnobacterium sp. 17-4]
 gi|328673714|gb|AEB29760.1| LexA repressor [Carnobacterium sp. 17-4]
          Length = 186

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 13/115 (11%), Positives = 31/115 (26%), Gaps = 10/115 (8%)

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
             +       +   +P      N              +  SM+      GD +I+     
Sbjct: 73  EPILAVEEATDYFPLPPNLQFENDSL------FMLTIRGESMINAGIFDGDEVIIRKQST 126

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N GD ++      +   K           L   N       +  +++  + +++
Sbjct: 127 ANNGDIVIAMTVEDEATCKRFYKEED-HYRLEPENDTMSPILL--NELTILGKVI 178


>gi|15675873|ref|NP_270047.1| putative repressor protein [Streptococcus pyogenes M1 GAS]
 gi|71904453|ref|YP_281256.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180]
 gi|94991385|ref|YP_599485.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270]
 gi|13623108|gb|AAK34768.1| putative repressor protein - phage associated [Streptococcus
           pyogenes M1 GAS]
 gi|71803548|gb|AAX72901.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180]
 gi|94544893|gb|ABF34941.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270]
          Length = 255

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 72/259 (27%), Gaps = 58/259 (22%)

Query: 2   TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
               +++I+   ++ +  + N+    +  K G+  ++     +         P+  ++ K
Sbjct: 7   QDLINREIFSTNLNMLMAKKNIKQIDIHNKLGIPKSTITGYVKGRS-----LPTAGNVQK 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKK--------------------------------EK 88
           +          +     S+   T                                   E+
Sbjct: 62  LADFFGVLKSDIDPRFDSNNIETNSNIIPSTLQKVTSTLSQLEHKRQLNVLDYAETQLEQ 121

Query: 89  EIPLLYFPPSGSGGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHK 141
           +  +     +     +       G           T+ +P               D    
Sbjct: 122 QNTVEEPQATYYTYNYYDHAASAGTGQYLNDVQVETIELPVDYDA----------DFVIP 171

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
               SM P Y  GD + +  +I ++ GD  +     GD   K L+     +  L SLN  
Sbjct: 172 VYGDSMEPEYHSGDYVFIKLSINLSDGDIGV-FEYYGDAYIKQLVINDSGAF-LHSLNDK 229

Query: 202 YPVDTVEMS-DIEWIARIL 219
           Y    ++   D   I  ++
Sbjct: 230 YDDILIDRDSDFRIIGEVI 248


>gi|309379597|emb|CBX21768.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 228

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F +    G       P +E++ KI      +I  LL    S     
Sbjct: 18  QAKIASDIEMTIAGFGRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGSPFPDE 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134
             K+                            G          + +     + I+     
Sbjct: 73  APKKSFAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTC 132

Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N +         +++     ++ K L    G  
Sbjct: 133 DVKNLSVISVKGDSMEGVLNDGDSILVNHSENTPKDGLYVLRINEN-LLVKRLQIVPGGI 191

Query: 193 IDLMSLNCCYPVDTV----EMSDIEWIARILW 220
           I+++S N  YP   +       D+E I R+ W
Sbjct: 192 INVISANEAYPAFEINLNHPADDVEIIGRVEW 223


>gi|229844478|ref|ZP_04464618.1| putative prophage repressor [Haemophilus influenzae 6P18H1]
 gi|229812727|gb|EEP48416.1| putative prophage repressor [Haemophilus influenzae 6P18H1]
          Length = 221

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 32/229 (13%)

Query: 3   SFSHKKIW----EAIDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPS 54
             + +KI       +D   +R NL   G    +A    + P + +K            P+
Sbjct: 1   MITEEKIKQDFAARLDIACKRKNLPEKGRGKVIADILKITPKAVSKWFNAET-----LPT 55

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-N 113
             +I+ +      T   L     +      +K+   PLL    +   G +       G +
Sbjct: 56  QANIYVLADFLGVTKEWLTYGDKNASIEKIEKQISYPLLSPIQA---GLWTDIRSLEGFD 112

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
            +  +    I S               + +  SMLP + +GD+++++  I    G  +  
Sbjct: 113 GYEMIPSTVIASE---------NSFYLRIERKSMLPRFNEGDLVLIDPDIAPTPGKFVAA 163

Query: 174 KPRTGDIVAKVLISRRGR------SIDLMSLNCCYPVDTVEMSDIEWIA 216
                +   K       R        +L+ LN  +P  +    DI  I 
Sbjct: 164 INGNNEATFKQYKELGTRTSEGIPHFELVPLNPMFPTLSSLNQDIRIIG 212


>gi|302670794|ref|YP_003830754.1| LexA repressor [Butyrivibrio proteoclasticus B316]
 gi|302395267|gb|ADL34172.1| LexA repressor [Butyrivibrio proteoclasticus B316]
          Length = 205

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 34/220 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
             ++I + I     +    P+   + +   L  TS   +  +     G  R         
Sbjct: 9   KQQEILDYIKEQTLQRGFPPAVRDICKAVNLKSTSSVHSHLETLEKNGYIRR-------- 60

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
               T     ++ D  F+  RT          +   P          +    N  + + +
Sbjct: 61  --DPTKPRAIEICDDGFNMVRTE---------IVSIPVIGQVAAGMPILAEENIDSYIPI 109

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P    P              K +  SM+      GD + +        GD+++       
Sbjct: 110 PASMCPKG------ADAFILKVKGDSMINAGIYNGDQIFVQQCSTAKNGDQVVALID-DS 162

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +   I L   N       V   D + + ++ 
Sbjct: 163 ATVKTFYKEK-GHIRLQPENDTMDPIIV--DDCQILGKVF 199


>gi|325695610|gb|EGD37510.1| transcriptional regulator [Streptococcus sanguinis SK150]
          Length = 228

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 21/223 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   LT   +A K  +   +++  +R   E     PSTE +  +    N    
Sbjct: 5   EKLKARRKELKLTQKDIADKLRISYQAYSAWERGVKE-----PSTEKVRLLEKLLNVPKG 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHNG 129
              ++       T     +  ++ +         +  V      ++      E+ +    
Sbjct: 60  YFTEIEIVRLYNTLSPNGKEQVVSYARDLVTEEQNKKVLSIAEPRYEYRVYEEMSAGLGA 119

Query: 130 IYAIQ------------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
               +              D        SM P Y  G + ++        G  +      
Sbjct: 120 TIYGEKEYDTVYYDEELGHDFASWVSGDSMEPKYPNGSVALIRETGFDYNG-AVYAVVWN 178

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                K +       + L+S+N  Y        D    + +I+
Sbjct: 179 EQTYIKRVYLEEDG-LRLVSINKKYKDKFAPYDDDPRIVGKIV 220


>gi|302185922|ref|ZP_07262595.1| peptidase [Pseudomonas syringae pv. syringae 642]
          Length = 218

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        L    +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRQERIARAIAT----SGLKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121
            AT      L      +             L   P+ S  +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEGPEKTPAFD---ANVALIDQPNMSFRYPVISWVSAGSWEEAVQPYP 109

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGRLVIAKL 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209


>gi|256019652|ref|ZP_05433517.1| phage reprossor [Shigella sp. D9]
 gi|332280784|ref|ZP_08393197.1| repressor protein [Shigella sp. D9]
 gi|332103136|gb|EGJ06482.1| repressor protein [Shigella sp. D9]
          Length = 234

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 10/214 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF----KILAATN 66
           + ++ +     ++ + L    G+      +      + R    S  ++            
Sbjct: 12  KRLNELMTIKGISVTQLKSLVGVTYEMARRYTIGAAKPRVSVMSKLALALGVSASYLEYG 71

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +      S    T+     I +L    S   G +    +   +    +      + 
Sbjct: 72  VGDREECKEMASIPNPTKPDVYRIEVLDLSVSAGPGTYMLSDYV--DVLYAIEFTTEHAR 129

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                  Q           SM P    GD L ++ +++    D +           K L 
Sbjct: 130 SLFGNRSQNDIKVMTVNGDSMSPTLVSGDRLFVDISVRHFQTDGVYSFVYGKTFHVKRLQ 189

Query: 187 SRRGRSIDLMSLNCCYPVDTVEM---SDIEWIAR 217
            + G  + ++S N  Y    ++      +  + +
Sbjct: 190 MQ-GNKLAVLSDNPAYEKWYIDEKSQDQLYVMGK 222


>gi|126669228|ref|ZP_01740140.1| probable transcriptional regulator [Marinobacter sp. ELB17]
 gi|126626309|gb|EAZ96991.1| probable transcriptional regulator [Marinobacter sp. ELB17]
          Length = 237

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +  +  +  ++ + L   A L   +    +    +       +    ++  A + +
Sbjct: 10  LGQRLKEVRVQRGMSQAKLGALADLTQAAIGALESRDSK------HSSMALQLARALHVS 63

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+             E     LY     +       +     +       +I     
Sbjct: 64  VDWLVTGEGPKSVPDADGECGDTDLYAGAPLNERDVMLHLLLELPRDLETERTKIVQSGR 123

Query: 129 GIY-----------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            ++            I            SM P+   G  +++++         +      
Sbjct: 124 AVFRFAKTILTKADVIPESAVCTSVWGNSMAPVLPDGARVVVDTDDVSVKDGEIYAVNHD 183

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI-----EWIARILWAS 222
           G +  K L  + G  ++++S N   Y  +T     +     E I R+ W S
Sbjct: 184 GMLRVKYLRRKPGGGLEIISQNSAEYAAETYSAEQVASGNIEVIGRVFWWS 234


>gi|226330488|ref|ZP_03806006.1| hypothetical protein PROPEN_04406 [Proteus penneri ATCC 35198]
 gi|225201283|gb|EEG83637.1| hypothetical protein PROPEN_04406 [Proteus penneri ATCC 35198]
          Length = 212

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 74/225 (32%), Gaps = 27/225 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       +   I ++ +    T + L +  G+   +    ++         P+ +++ K
Sbjct: 1   MKM---DTVGSRIKKLRKTTKTTQNELGKYCGVSGVAVGYWEKDLN-----LPNGDALIK 52

Query: 61  ILAATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +    N T   +   +   +  +     +++P+L +  +G    + +             
Sbjct: 53  LAQFFNTTESYILYGISSKENISVITTMRKLPVLSYVQAGKFTEYLATEI---------- 102

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIK 174
             E          +         +  SM     +P   +G  +I++ A +   G  ++ +
Sbjct: 103 YDETLEYLETSLKVSPSSFALTVRGDSMTNPSGMPSIPEGAKVIVDPAAEAISGKIVVAR 162

Query: 175 PR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              + ++  K LI        L  LN  YP   +  +  E +  +
Sbjct: 163 LTGSDEVTIKKLIIDGPNKY-LSPLNPRYPNIPINGN-CEIVGVV 205


>gi|289625056|ref|ZP_06458010.1| repressor protein c2, putative [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647376|ref|ZP_06478719.1| repressor protein c2, putative [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488759|ref|ZP_07006787.1| Repressor protein c2 [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298156677|gb|EFH97769.1| Repressor protein c2 [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330867268|gb|EGH01977.1| repressor protein c2 [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 218

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        +    +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRQERIARAIAA----SGMKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VP 121
            AT      L           +        L   P+ S  +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEG---PEKDAPFDANVALIDQPNMSFRYPVISWVSAGSWEEAVEPYP 109

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGISVPEGMMILVDTEADVQPGRLVIAKL 169

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 170 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 209


>gi|238761971|ref|ZP_04622944.1| Prophage repressor protein [Yersinia kristensenii ATCC 33638]
 gi|238699699|gb|EEP92443.1| Prophage repressor protein [Yersinia kristensenii ATCC 33638]
          Length = 240

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 72/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++   + +  +     +   ++   +A + G+  ++ N+             + 
Sbjct: 4   KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNK 114
            +  K+L     +    L    +    +        L   P  S +  +        GN 
Sbjct: 62  AAFAKVLNEPISSFSPSLAKELAKMAESLSISHSTKLYDKPTGSIANSYPLISWVSAGNW 121

Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167
           +  +    + +I                   +  SM       + +G I++++   +   
Sbjct: 122 YEAIEPYQLRDIEIWPESTKNAHDNAFWLSVKGDSMTSSSGISFPEGMIILVDPEKEPLP 181

Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++       +   K LI   G    L  LN  Y +  +  +  + +  ++
Sbjct: 182 GNFVVAKLTDDNEATFKKLIVDAGVKY-LKPLNPAYRLIELNGN-CKILGVVV 232


>gi|71900485|ref|ZP_00682615.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1]
 gi|71729725|gb|EAO31826.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1]
          Length = 252

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 56/235 (23%), Gaps = 29/235 (12%)

Query: 13  IDRMAERHNLTPSGLARKAG---LDPTSFNKSKRFGIE-------GRNRWPSTESIFKIL 62
           I ++       P   +R+ G         ++               R            L
Sbjct: 11  IKQLVAAAG-GPVEFSRRRGAGRWSQAQVSQWISETNPKGIGHKLARAIEAELGLPNAYL 69

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-- 120
                              T E +  +      P +         +   GN         
Sbjct: 70  DRLPSVDAPHPAGQHIKLDTYEFQAIDDGEELDPEANILVDEVDVMLSAGNGVLIPEFIE 129

Query: 121 -----PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
                P         +         +    SM       D +++N A       ++    
Sbjct: 130 TKFRMPFPLPWLRHAHINPKDVKLMRVHGDSMERTLFDNDRVMVNFADTRIRDGKVYAIA 189

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD---IEWIARIL 219
             G+   K L + R   + ++S N          Y  + V  ++   ++ + R++
Sbjct: 190 IGGEAKVKRLYTLRNNGLRIVSDNQNKDSEGHRIYKDEIVPPNEMETVQVLGRVI 244


>gi|323342770|ref|ZP_08083002.1| LexA repressor [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463882|gb|EFY09076.1| LexA repressor [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 195

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 60/210 (28%), Gaps = 36/210 (17%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
              RH L+   +    G+  ++ ++ +        +  S E   ++       +      
Sbjct: 10  FRARHELSLEEVGDAVGVSKSTVSRWEAGI----IKKISLEKQERLSDLFKINVPDYWVY 65

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
                             +F P          +    +      V +        +    
Sbjct: 66  H-----------------FFKPVLGVVRAGYDLLAHQDIIAYEEVSKREYDQGDYF---- 104

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                K    SM      +GD++ +     +  GD  ++  +  ++  K +I  +   + 
Sbjct: 105 ----LKVVGDSMTGSRIYEGDLIFIKKTQDIVSGDIAVVLIQGDEVTVKRVI-LKDDLMI 159

Query: 195 LMSLNCCYPVDTVEMSD-----IEWIARIL 219
           L + N  YP       +     +E I ++L
Sbjct: 160 LEATNPDYPTQYYNAEEVLMLPVEVIGKVL 189


>gi|149196525|ref|ZP_01873579.1| LexA repressor [Lentisphaera araneosa HTCC2155]
 gi|149140205|gb|EDM28604.1| LexA repressor [Lentisphaera araneosa HTCC2155]
          Length = 207

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 61/225 (27%), Gaps = 30/225 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   +   ++  + I+    R  + P+   +A +  +   TSF   +    +G     S 
Sbjct: 1   MKGLTDRQQETLDFIEDFTAREGMAPTIYEIAERFNIKSATSFAHVRALQRKGYLTRSS- 59

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                                      T  + + +  +   P          +    N  
Sbjct: 60  ------------------KARSMTVTNTTTRPRNLSFMLSIPMLGRISAGMPLMAEENVE 101

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
             + +               +         SM       GD +I+      N GD ++  
Sbjct: 102 REIQIDPASFQGLRA---DGRLFALLVNGESMRDAGILDGDSIIVKQQDNANAGDIVV-A 157

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              GD   K L       I+L   N  +     E +++    +++
Sbjct: 158 MVHGDTTVKQLFF-TNGKIELRPCNDEFQTQFYEPAEVYIQGKVV 201


>gi|44888098|sp|Q7W0T5|LEXA_BORPA RecName: Full=LexA repressor
          Length = 216

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 24/215 (11%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           T  +   ++I + I +   R    P  + +A+  G                  R P+   
Sbjct: 3   TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 45

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                 A    I                       L  P          G    G+    
Sbjct: 46  DHLKALARKGAIELTAGASRGIRLKVPDNAAPSAQLTHPLLAQLVLPLVGRVAAGSPILA 105

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               E     +     QT D   K +  SM      +GD+L +  A +   G  ++ +  
Sbjct: 106 SEHVEREVGVDPGLFTQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-L 164

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             ++  K L  +    I+L+  N  +    V  +D
Sbjct: 165 GDEVTVKRLQRQ-NGRIELLPENPDFSPIVVANTD 198


>gi|70729331|ref|YP_259068.1| LexA repressor [Pseudomonas fluorescens Pf-5]
 gi|68343630|gb|AAY91236.1| LexA repressor [Pseudomonas fluorescens Pf-5]
          Length = 201

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 59/216 (27%), Gaps = 35/216 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  E +   P  + +A++ G                     + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSP---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                     T    + I +  F           G    G    
Sbjct: 46  HLKALARK-------------GAIEMTPGASRGIRIPGFEAKADDTLPIIGRVAAGAPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 93  AQQHIEESCNINPTFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQVVVARI 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V + D
Sbjct: 153 -GDEVTVKRFKR-EGSKVWLIAENPEFAPIEVNLKD 186


>gi|299067356|emb|CBJ38555.1| transcriptional lexA repressor [Ralstonia solanacearum CMR15]
          Length = 216

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 23/216 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I +  +R    P  + +A + G    +                + E
Sbjct: 1   MATLTPRQQQIYDLIRQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                 R           L             G    G+   
Sbjct: 45  EHLRALARKGVIELTPGASRGIRLRAEGGASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +        D   K +  SM       GD+L +  A +   G  ++ + 
Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRAAEAANGKIVVAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K    + GR ++L++ N  +    V++  
Sbjct: 164 LGDDVTVKRFQRK-GRQVELLAENPDFEPIHVDLDR 198


>gi|113868257|ref|YP_726746.1| LexA repressor [Ralstonia eutropha H16]
 gi|123133872|sp|Q0K9E3|LEXA_RALEH RecName: Full=LexA repressor
 gi|113527033|emb|CAJ93378.1| SOS-response transcriptional repressor LexA [Ralstonia eutropha
           H16]
          Length = 217

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 21/216 (9%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I     R    P  + +A + G              E   R  + +
Sbjct: 1   MATLTPRQQQIFDLIRNTIRRTGFPPTRAEIAAEFGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++    +  I   +    S+             L             G    G+   
Sbjct: 54  GVIELTPGASRGIRLKVAHSDSEMPDQFS-------LPMAGVMQLTLPLVGRVAAGSPIL 106

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +     +  D   + +  SM       GD+L +  A +   G  ++ + 
Sbjct: 107 AAEHIDRQYQVDASVFDERPDYLLRVRGLSMRDAGILDGDLLAVRRASEAANGKIVVAR- 165

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K L  R G  I+L++ N  +    VE  +
Sbjct: 166 LGDDVTVKRLQRR-GGHIELIAENPDFTNIIVEPGE 200


>gi|322419141|ref|YP_004198364.1| LexA family transcriptional repressor [Geobacter sp. M18]
 gi|320125528|gb|ADW13088.1| transcriptional repressor, LexA family [Geobacter sp. M18]
          Length = 201

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 5/112 (4%)

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
            G     +   E     +     +      + +  SM+    ++GD+ ++      N  +
Sbjct: 85  AGALHPAIEDIEGHFTIDRSQLEKGGAFFLRVKGDSMIHAHIQEGDLALVRPQPHANNKE 144

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219
            ++     G+   K         I L   N  Y    V+  D  +  I +++
Sbjct: 145 IVV-AMVGGEATLKRFYR-EADRIRLQPENPNYDPIIVQEGDGEVSIIGKVV 194


>gi|300087541|ref|YP_003758063.1| LexA family transcriptional regulator [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527274|gb|ADJ25742.1| transcriptional repressor, LexA family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 210

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 28/225 (12%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S K+  + + + R  E H   PS   +A   GL      +     +E +       
Sbjct: 1   MSALSEKQRKVLDYLRRFMESHGYAPSVRDIADGCGLKSAPVAQYYLDVLEKK------G 54

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            I ++   +      L                    +  P + +       +    +   
Sbjct: 55  FIARMKGVSRSITLPLRAGGSLKAVPLLGIIAAGVPIALPENDTWNLTPEEMVEVSD--- 111

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY-RKGDILILNSAIQVNCGDRL-LIK 174
                        I   +T     K + TSM+      GD ++L        G  + +  
Sbjct: 112 ------------DILRGRTNVFALKVRGTSMIDALVDDGDTVLLTQTGTAEDGAMVAVWL 159

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               ++  K +    G  I L   N        +  ++E   R++
Sbjct: 160 QDRNEVTLKKIYR-EGNRIRLQPANRYMEPIFCDPGNVEIQGRVI 203


>gi|150021069|ref|YP_001306423.1| SOS-response transcriptional repressor, LexA [Thermosipho
           melanesiensis BI429]
 gi|166224653|sp|A6LM87|LEXA_THEM4 RecName: Full=LexA repressor
 gi|149793590|gb|ABR31038.1| SOS-response transcriptional repressor, LexA [Thermosipho
           melanesiensis BI429]
          Length = 199

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 59/223 (26%), Gaps = 35/223 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   + K+  + + I    +++  +                             PS   I
Sbjct: 1   MKKLTEKQQKVLDFIKNYIQQNGYS-----------------------------PSIRDI 31

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K    T       +      G  T   +    +       S      G    G      
Sbjct: 32  AKHFKLTPRGAHIHVIALEKKGYITRNPKNSRSISLVKRQESILIPVKGKISAGMGIEMF 91

Query: 119 GVPEIRSPHN-GIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
            + +        + +        K +  SM+      GD +IL    ++  G    +   
Sbjct: 92  EIVDEEIEIPVRMISGFGNYFALKVEGNSMIDAHIINGDYVILKKQYRIPNGQIAAVVFD 151

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +  K    ++   ++L+  N        +  DI+ I +++
Sbjct: 152 -NKVTLKRFYHKKD-KVELVPENKDMNPIVCDAKDIKVIGKLV 192


>gi|153581899|emb|CAM34257.1| phage repressor protein [Streptococcus pyogenes]
 gi|262113712|emb|CAR95379.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 229

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 23/223 (10%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +           S +A K G++  S+NK +        +  +  ++  IL         
Sbjct: 6   RLKEKRIERKFNQSEIAYKLGINRASYNKWESGKSVPNQK--NLTALATILDVPVTYFES 63

Query: 72  LLDLPFSDGRTTEKKEKEIPLL-----------YFPPSGSGGFFDSGVFPTGNKW---NT 117
             ++  +  + +   + +                  P  S           G      + 
Sbjct: 64  EYNIVNNYLQLSPDNQVKAEEYVEELLLSQQTSNVTPLFSVQVLSDIQLSAGLGEGFFDE 123

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                + S           D     +  SM P+Y+ G++ ++ S      G  +      
Sbjct: 124 FETETVYSNEEQY----GYDIAAWIEGDSMEPIYKNGEVALIRSNGFDYDG-AVYALSWK 178

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
             +  K L         ++SLN  YP   +    D   +  ++
Sbjct: 179 DSVYIKKLYRDEDG-FRMVSLNKDYPEKFIPYEDDPRIVGLVV 220


>gi|240850636|ref|YP_002972036.1| SOS response regulator LexA [Bartonella grahamii as4aup]
 gi|240267759|gb|ACS51347.1| SOS response regulator LexA [Bartonella grahamii as4aup]
          Length = 237

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 62/230 (26%), Gaps = 14/230 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-R 51
           M +    ++   I    +   + PS         L+ K+G+        +R  I     R
Sbjct: 1   MLTCKQYELLLFIHNHTKETGVPPSFEEMKNALELSSKSGIHKLIIALEQRGFIRRLPNR 60

Query: 52  WPSTESIF---KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
             + E I    KI    +        +   + R   K    +         +      G 
Sbjct: 61  ARAVEVIRLPEKITFNLSLARKISPSMIEKNKREISKNLSNLDNFDEEEKKNITIPIMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
                  + +                 +    + +D SM        D +I+        
Sbjct: 121 ISASVPASAILQQINTLSLPRNMVNTGEHYALEVKDDSMMEAGILDKDTIIVKRQNTAIT 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           G+ ++      +   K    +   SI L + N  Y   T E   +E   +
Sbjct: 181 GEIIVAFIDKKEATLKRYRRKGA-SIALEAANPHYEARTYESERVEIQGK 229


>gi|78186881|ref|YP_374924.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273]
 gi|78166783|gb|ABB23881.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273]
          Length = 245

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 36/241 (14%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--------------EGRNRWP- 53
           + E I  +   +  T      K G+     ++ +                    R++W  
Sbjct: 7   LGERIRAVRRHYRETQEEFGEKIGISGNRVSELENGKGGTGAGVVQALCAAFSVRHQWVL 66

Query: 54  --STESIFKILAATNETICQLL------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
               E + K   + +E             +    G  T  +E+                 
Sbjct: 67  SGKGEMLEKAEKSRDENDLSHRLLLLEERVGRIMGTATTDREETGEDEAVVQVPLYSSAV 126

Query: 106 SGVFPTGNKWN---TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNS 161
               P         +V  P   +        +           SM+ +    GD L++ +
Sbjct: 127 PAGMPAAAADEVECSVDFPRSWTKG------KKNIYALTVSGDSMMDIGIMPGDTLLVEA 180

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARILW 220
                 G  ++I     ++  K L    G ++ L   N  Y    V    D   +  ++ 
Sbjct: 181 RETARDGQ-VVIASLNSEVTVKTLCISAGGAVALAPENRKYHPIPVPPDSDFRIMG-VVL 238

Query: 221 A 221
           A
Sbjct: 239 A 239


>gi|325263951|ref|ZP_08130684.1| repressor LexA [Clostridium sp. D5]
 gi|324030989|gb|EGB92271.1| repressor LexA [Clostridium sp. D5]
          Length = 204

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 55/221 (24%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
              +I E I          P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQLEILEYIKSQILERGFPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL  T                           +   P          +    N  N   
Sbjct: 69  EILDDTFN--------------------LTRREVVNVPLVGRVAAGEPLLAQENIENYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         +    Q      +  SM+      GD++++      + GD ++      
Sbjct: 109 IPME-------FMPNKQTFMLTVKGESMINAGILDGDMVLVEQEHTASNGDMVVAL-VED 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N       V+  ++  + +++
Sbjct: 161 GATVKTFYKEE-GVYRLQPENDYMEPIIVK--EVSILGKVI 198


>gi|167034662|ref|YP_001669893.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861150|gb|ABY99557.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 217

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 15/215 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + R    HNL+   LA + G+         R       R P+ E+I + L        
Sbjct: 6   AFLKRYKREHNLSQLKLAERLGMTQGGVGHWLRGT-----RRPTVETINEKLEKLGLVFL 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIR-SPHN 128
           +   +        E   +    +  P SG    + S  FP     +    +PE   S   
Sbjct: 61  EAQVMVVERNIVREAPGRYA--VEQPVSGEALLYASFRFPVLAWSDLQGPLPETAKSNEQ 118

Query: 129 GIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
             Y           ++ SM         +G  +++++ + V  G  ++ +      V + 
Sbjct: 119 TDYMPAGNAFWLLVENDSMNAASGKSVPEGMRVLVDTGLPVEPGRLVIARQPGRPAVLRQ 178

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           L+   G    L  LN  YP    E    E+I  ++
Sbjct: 179 LVEEGGDK-MLKPLNTRYPTILCEEG-CEFIGVVV 211


>gi|225021233|ref|ZP_03710425.1| hypothetical protein CORMATOL_01245 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681098|ref|ZP_07403905.1| repressor LexA [Corynebacterium matruchotii ATCC 14266]
 gi|224945966|gb|EEG27175.1| hypothetical protein CORMATOL_01245 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659303|gb|EFM48803.1| repressor LexA [Corynebacterium matruchotii ATCC 14266]
          Length = 244

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 61/217 (28%), Gaps = 6/217 (2%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I + I          PS   +   AGL  TS    +   +E +       +  + + 
Sbjct: 25  QRRILQVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELERKGFLRRDPNKPRAVD 84

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  +L     +                   + +      G    GN         +
Sbjct: 85  VRAIPGEELKKTATAGKGRKAPTATVTGQSTVEAANTSYVPLVGSIAAGNPILAEQNISL 144

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P         +    +    SM       GD ++L S   V+ GD +      G+   
Sbjct: 145 YYPLPQEIVGDGELFMLQVVGESMRDAGIFDGDWVVLRSQKVVDKGDFVAAMID-GEATV 203

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K    +    + L+  N  +    V   + E I +++
Sbjct: 204 KEFH-QDQSGMWLLPHNDSFDPIAVSP-ETEIIGKVV 238


>gi|294670301|ref|ZP_06735185.1| hypothetical protein NEIELOOT_02021 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307957|gb|EFE49200.1| hypothetical protein NEIELOOT_02021 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 251

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 45/236 (19%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
           P+ +AR      +   +        ++  P  E++  I          L+          
Sbjct: 17  PAQIARDLNWSISGVLRIFE-----KDTIPKAETLVSIQKLKGCDWKWLMTGEGVPFPKG 71

Query: 84  EKKEKEIPLLYFPPSGS----------------------------GGFFDSGVFPTGNKW 115
                   L       +                                 +     G+ +
Sbjct: 72  AATGSNQELQEPVAGYNAKWNAKSIQTAPEVRDTLGNPVDLSEFVFIPRYNVKVAAGHGY 131

Query: 116 NTVGVPEIRSPHNGIYAI-------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
                    +     Y I           +  K    SM  +   GD ++++ +     G
Sbjct: 132 AVEDEKPKFTMAFRRYWIRVHLRTDPKSLSVVKVAGDSMEGILFDGDNVLVDHSRN-QPG 190

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILW 220
           + L +     +++ K   +  G  + + S N  Y    ++++D    +E I +++W
Sbjct: 191 NGLYVLRIGEELIVKRTQTLPGNHLLVSSANEAYQPFELDLADETSGVEIIGKVVW 246


>gi|325266458|ref|ZP_08133135.1| LexA family repressor/S24 family protease [Kingella denitrificans
           ATCC 33394]
 gi|324981901|gb|EGC17536.1| LexA family repressor/S24 family protease [Kingella denitrificans
           ATCC 33394]
          Length = 217

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 21/221 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           ++ I + I +M +  +LT + LA+K  G+   + ++ +    +     P+ ++++ +   
Sbjct: 2   NETIGQRIKQMRKERHLTQNDLAKKIQGVSHAAISQWEADLTK-----PNADNLYDLSLV 56

Query: 65  TNETICQLLDLPFSDGRTTE--KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            N     LL     +    E     K   + Y          +       +K   +    
Sbjct: 57  FNCDFAWLLRGGSGNVTQHELLDISKIPVVSYDYLKEILENSNDTRIINSDKDEYIMSEI 116

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                        +    +  D SM P +   D+++ +  +    G+ ++ K        
Sbjct: 117 KYM---------GRVIALRVTDDSMKPDFMPDDMVVFDLNLAPAPGEFVVAKIDNRFFFR 167

Query: 183 KV----LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K     L +    S  L+ LN  Y   +    +I+ +  ++
Sbjct: 168 KFKANELAAENSGSFSLVPLNDDYAPLSSNQYNIQIVGTLV 208


>gi|149912077|ref|ZP_01900667.1| putative transcriptional regulator [Moritella sp. PE36]
 gi|149804843|gb|EDM64881.1| putative transcriptional regulator [Moritella sp. PE36]
          Length = 138

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           T+        +  I               SM P  + G ++++N  +     D + +   
Sbjct: 27  TISFEPHWLRNE-IGVYPNNVFLMLVDGDSMQPTLKNGSMIMVNRDVDNLS-DGVYVMRH 84

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-----EMSDIEWIARILWASQ 223
             +++ K L    G  I + S N  Y    +     +  ++  I R++W  Q
Sbjct: 85  DNNLLVKRLQMLPGGIIRVKSDNTMYDPWEITKSQLDGEELALIGRVVWTGQ 136


>gi|322412563|gb|EFY03471.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 248

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 66/232 (28%), Gaps = 39/232 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + +     N++   LA+K G+  T+  + ++  I        TE + KI    N 
Sbjct: 2   DIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVP----TEVLEKISKILNT 57

Query: 68  TICQLLDLPFSDGR------------------TTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                +    +                       ++K                     +F
Sbjct: 58  NPAYFMGWSDTPTPVQTQTLQEIIVTSKQLEQPRQEKVLSFANEQLEEQSKVVSMHEELF 117

Query: 110 PT------------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                         G  +            +        D     +  SMLP Y +GD+L
Sbjct: 118 SVQGVTYAAAASGFGRGFEADDYDTYTVYTDEE--PPRYDYAIGVRGDSMLPKYEQGDML 175

Query: 158 -ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
            I++  +    G   ++    G    K + +     + L+SLN  Y    ++
Sbjct: 176 YIVDRGMSTYNGQLCIVVHN-GQTYFKKVYTEEDG-LRLVSLNKKYNDIFID 225


>gi|324993435|gb|EGC25355.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK405]
 gi|325694151|gb|EGD36069.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK150]
 gi|327461709|gb|EGF08040.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1]
 gi|327489562|gb|EGF21355.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK1058]
          Length = 225

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 59/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NL  + + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLAQASIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSTLYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGRGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|170720993|ref|YP_001748681.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169758996|gb|ACA72312.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 235

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 71/218 (32%), Gaps = 16/218 (7%)

Query: 10  WEAIDR-MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           W A+ R   E  +++   LA + G+   S           + R P  ES+ ++       
Sbjct: 20  WIALVRDRMEELDISQEQLAERVGVSQGSVGHWVN-----KRRQPKVESMNRVFVELGMP 74

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125
              +       G+  E   + +            +     +P    W+ +      +   
Sbjct: 75  HYHVSMQLRVLGQVGEDSGRYVLDEEDDDVDLMQYIVCFRYPV-RGWDALADSAHEQGTV 133

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                Y  Q +      ++ +M         +G  ++++  ++   G  ++ +      +
Sbjct: 134 FEQTEYLAQGKAFWLTVENDAMSTASGRSVPQGMRILVDPGLEAEPGRLVIARQPGKSAI 193

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            + L    G+   L +LN  YP    E    E++  ++
Sbjct: 194 LRELAEEGGQRY-LKALNSSYPALVCE-DGCEFLGVVV 229


>gi|19746131|ref|NP_607267.1| repressor protein [Streptococcus pyogenes MGAS8232]
 gi|19748307|gb|AAL97766.1| putative repressor protein [Streptococcus pyogenes MGAS8232]
          Length = 232

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 15/223 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +        +T S L R   ++  + +  ++       +  +       + +     
Sbjct: 4   GHQLKTARLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDCFDP 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L  P++    + K++                    +      +       + +    
Sbjct: 64  NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            Y                 D        SM P Y  G+++++        G  +      
Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           G    K +       + L+SLN  Y         +   I +I+
Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224


>gi|257459294|ref|ZP_05624408.1| putative transcriptional regulator [Campylobacter gracilis RM3268]
 gi|257443307|gb|EEV18436.1| putative transcriptional regulator [Campylobacter gracilis RM3268]
          Length = 259

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 65/239 (27%), Gaps = 29/239 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK-------RFGIEGRNRWPSTESIFK 60
            I + I    +   LT    A K G+        +       + G E ++  P  E +  
Sbjct: 2   DIHQKIRAFRQEAGLTQVQFAEKLGITQGLVAHYETQPGEIGKNGKEKKSSKPELEKLPL 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP--SGSGGFFDSGVFP-----TGN 113
           I     + +  L D   +  R   KKE +     +        G  +           G 
Sbjct: 62  IAEILGKNVIDLFDDEETSKRQIVKKELKNNFEKYAHLIPAEYGLKNVVFLSKSDMLIGA 121

Query: 114 KWN--------TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN----S 161
                                              +    SM P Y +GD+ I++     
Sbjct: 122 GSEGAYDLDLFNKETKIAVDRSFIKGLDPKNLKLFEVVGDSMQPEYDEGDLAIVDMVNFR 181

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIARI 218
              +  G    +      +  K +      +I L+SLN  Y          + E + ++
Sbjct: 182 GDFIKIGGI-YVVRVGDVVYVKRVEFLPKGAIKLISLNSKYGDLYPHKEGYEYEILGKV 239


>gi|6249458|emb|CAB60047.1| hypothetical protein [Legionella pneumophila]
          Length = 244

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 15/225 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               +KI   I +      LT   LA     L+ +  N  +R       R P  E I ++
Sbjct: 19  MSIKEKIGLRIKQERMSKKLTMKALAELTDNLNISRINNYERGE-----RTPGPEEIKQL 73

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGV 120
             A   +   L+ L      + +       L       +             +    + +
Sbjct: 74  ARALEVSPSFLMCLSDDRQGSFKTPGLGGLLPILDYKSACYPALVIQRIKEESYSEKLDL 133

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-D 179
             I S       I         +D SM P ++  DILI++   Q N GD ++ +     +
Sbjct: 134 IPISSTVQKR--IGKNAFALAVKDESMAPEFKFDDILIVDPDTQPNPGDYIVARLENEPE 191

Query: 180 IVAKVL----ISRRGRSIDLMSLNCCYPVDTVEMSDIEW-IARIL 219
           I+ +      +S+     +L+++N  +P   +     E  I  ++
Sbjct: 192 IIIRKFKQLSVSKEKPEFELVAINNDWPDVKISKELNEIFIGSVI 236


>gi|225378074|ref|ZP_03755295.1| hypothetical protein ROSEINA2194_03734 [Roseburia inulinivorans DSM
           16841]
 gi|225210075|gb|EEG92429.1| hypothetical protein ROSEINA2194_03734 [Roseburia inulinivorans DSM
           16841]
          Length = 203

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 53/221 (23%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             K+I E I          P+   +     L  TS   +  +     G   R P+     
Sbjct: 8   KQKEILEYIKGEILSKGYPPAVREICEAVDLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL                              +   P          +  T N  N   
Sbjct: 68  EILDDDFN--------------------LTRREVVNVPIVGHVAAGEPILATENIENYFP 107

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         Y    +    K +  SM+      GD +++        GD ++      
Sbjct: 108 IPVE-------YMPNEETFMLKVKGESMINAGIFNGDNVLVKKQPNAENGDIVVALVD-D 159

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N       V+  +   + ++ 
Sbjct: 160 SATVKTFYK-EDGYYRLQPENDTMDPIIVK--ECSILGKVF 197


>gi|238027471|ref|YP_002911702.1| LexA repressor [Burkholderia glumae BGR1]
 gi|237876665|gb|ACR28998.1| LexA repressor [Burkholderia glumae BGR1]
          Length = 235

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   +++++ + R  ER    P  + +A + G              E   R  + +
Sbjct: 21  MTKLTARQQQVFDLVRRAIERSGFPPTRAEIAAELGFSSP-------NAAEEHLRALARK 73

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++ A                      +      L             G    G+   
Sbjct: 74  GVIELAAG----------ASRGIRLLGLDEAPHQLTLPHAALMQLSLPLVGRVAAGSPIL 123

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                      +        D   K +  SM       GD+L +    +   G  ++ + 
Sbjct: 124 AQEHISQHYACDPALFTSKPDYLLKVRGLSMRDAGILDGDLLAVQKRSEAKDGQIIVAR- 182

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L       I+L++ N  Y    V+ 
Sbjct: 183 LGDDVTVKRLKRHSTG-IELIAENPDYENIFVKA 215


>gi|225575216|ref|ZP_03783826.1| hypothetical protein RUMHYD_03305 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037509|gb|EEG47755.1| hypothetical protein RUMHYD_03305 [Blautia hydrogenotrophica DSM
           10507]
          Length = 227

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 70/225 (31%), Gaps = 26/225 (11%)

Query: 6   HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            K+I+   ++    + N   + +A+  G  PT+FN       +   +    +++      
Sbjct: 18  QKRIFAKNLNFYISKSNKQQNEVAKDLGFPPTTFNTWC--VGKVMPKMGKVQALADYFGV 75

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEI 123
               + +  +   S   +         L      +     F                 E 
Sbjct: 76  LKSDLLEDKNKDDSLHISNIFPITTHKLPMLGEIACGKPIFMD---------------EN 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           R  +  I +    D   K +  SM+      GDI+ + S  +V  G+   +     +   
Sbjct: 121 RDNYTMIGSNVKADFCLKAKGDSMVNARIMDGDIVFIRSQPEVENGEIAAVAID-DEATL 179

Query: 183 KVLISRR-GRSIDLMSLNCCYPVDTVEMS---DIEWIARILWASQ 223
           K        +++ L+S N  Y           ++  + + + A Q
Sbjct: 180 KRFYRDEITQTVTLISENPIYAPMVFTKECQKNVYILGKAV-AFQ 223


>gi|94990537|ref|YP_598637.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270]
 gi|94544045|gb|ABF34093.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270]
          Length = 232

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 15/223 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +        +T S L R   ++  + +  ++       +  +       + +     
Sbjct: 4   GHQLKTARLSRGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L  P++    + K++                    +      +       + +    
Sbjct: 64  NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            Y                 D        SM P Y  G+++++        G  +      
Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           G    K +       + L+SLN  Y         +   I +I+
Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224


>gi|289623593|ref|ZP_06456547.1| peptidase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650802|ref|ZP_06482145.1| peptidase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868513|gb|EGH03222.1| peptidase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 203

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   +A + G+ P +             R P  E I + L      I       
Sbjct: 1   METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134
              G    +   +    Y  P  S                    P   S    I  Y  +
Sbjct: 56  SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109

Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189
            +      +  SM         +G ++++++ I+   G  ++   P + +   K L+   
Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED- 168

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                L  LN  YP   V   + + I  I
Sbjct: 169 AGRYFLKPLNPTYPTLAVT-EECKLIGVI 196


>gi|317405687|gb|EFV85983.1| hypothetical protein HMPREF0005_01272 [Achromobacter xylosoxidans
           C54]
          Length = 231

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 55/231 (23%), Gaps = 20/231 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I        LT   L  + G+   +    +        R      +   L  T E 
Sbjct: 3   LGKQIRHYRAALGLTLEQLEARTGVGVGTIAALE---GRDSERSKYASRLAAGLGLTLEQ 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------- 121
           +         D    +                           G        P       
Sbjct: 60  LLDESAQYPPDVVLADTGGASRADDG-AGGDLRIPRFDTGGAMGAGVELRDQPGVIQSLR 118

Query: 122 ---EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              E    +   Y              SM P+Y  GD L+++  +     D +       
Sbjct: 119 VSQEWLHKNLRHYTAAANLCVVTGFGDSMRPMYNPGDPLLVDLGVVKADVDGVFFFRVGN 178

Query: 179 DIVAKVLISRRGRS---IDLMSLNCCYPVDTVEMS-DIEWIARI--LWASQ 223
           +   K L          I   S N  Y    +    D++   R+  +W S+
Sbjct: 179 EGFIKRLQRIPSARGLLIRAKSENTKYDAWDITEDMDLQIFGRVLKVWRSE 229


>gi|300856826|ref|YP_003781810.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300436941|gb|ADK16708.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 314

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 69/248 (27%), Gaps = 43/248 (17%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK-ILAAT 65
           + I   I    E   +T   L+   G++     K +          P ++ + K I    
Sbjct: 67  ENIGYIIKEEREYQGITQKELSDAVGINENELAKYENNEA------PISQFLAKKIANFF 120

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----GNKWNTV-- 118
           + +    L+     G    +   +          +    +S   P       + + T+  
Sbjct: 121 DMSFPAFLNKYGLYGDIPSQFNGDADWYESFKKAAYYDANSNTTPNKVAESSDIYETINK 180

Query: 119 -----------------------GVPEIRSPHNGIYAI-QTQDTRHKTQDTSMLPLYRKG 154
                                         P    +          K +  SM   +++G
Sbjct: 181 DMSNVINIPIVGVVRAGKPILAQDNISGYLPTLKQFIDNDKDYFYLKVKGDSMNQEFKEG 240

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPV--DTVEMS 210
            +L++     +  G   ++     +   K ++      I L+ +  N  Y      ++  
Sbjct: 241 SLLLIEKTPCIENGQIGVVLIDGMEATVKKIVKNEN-MITLIPMSNNPEYVPKMYDIKKD 299

Query: 211 DIEWIARI 218
           +I+ I  +
Sbjct: 300 EIQIIGVV 307



 Score = 39.4 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + + I  + +   +T   LA+  GL  +S    +        +  S E++ K+    
Sbjct: 2  LGDKIKDLRKLKKITQQKLAKSIGLSQSSIGMIESN-----KQGASNETLVKLAKLF 53


>gi|325127686|gb|EGC50599.1| putative transcriptional regulator [Neisseria meningitidis N1568]
          Length = 202

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 18/199 (9%)

Query: 37  SFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP----L 92
           +     R   EG    P +E++ KI      +I  LL    +       K+         
Sbjct: 2   TIAGFSRIWNEGGL--PKSETLKKIKQLKGCSIDWLLTGEGNPFPDEAPKKSLAYDTLGN 59

Query: 93  LYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDT 145
                              G     +        +                 +    +  
Sbjct: 60  EVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGD 119

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           SM  +   GD +++N        D L +     +++ K L    G  I+++S N  YP  
Sbjct: 120 SMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAF 178

Query: 206 TVEM----SDIEWIARILW 220
            + +     D+E I R+ W
Sbjct: 179 EINLNDLTDDVEIIGRVEW 197


>gi|152979060|ref|YP_001344689.1| putative phage repressor [Actinobacillus succinogenes 130Z]
 gi|150840783|gb|ABR74754.1| putative phage repressor [Actinobacillus succinogenes 130Z]
          Length = 243

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 72/222 (32%), Gaps = 32/222 (14%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
           PS  +R+ G+  ++  + ++   +     PS  ++ KI  A N  +  L     S   T 
Sbjct: 21  PSEFSRQTGVTLSTITRWRKGEAD-----PSRTNLIKIAEAANVNLEWLATGKGSADNTA 75

Query: 84  EKKEKEIPL---------------LYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEIRS 125
              E+   +                +          +  V   G             + +
Sbjct: 76  TLDERTDGVGEITAYNSRSVARYEEFVNQFEFIPMHNDIVVSAGAGGYNEEEYDPNNVLA 135

Query: 126 PHNGIYAIQT----QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                   +         +     SM P  +  D+L+++ +  +    ++ +    G ++
Sbjct: 136 FRKDWLQSKGVKAKNCEVYFATGDSMYPTIQDKDLLLIDHSRNILQDGKVFVINNGGRLL 195

Query: 182 AKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE---WIARIL 219
            K +  +   S+ L+S N   Y    V  ++++    +  ++
Sbjct: 196 VKRVQLQF-GSVKLISDNASLYEPVIVPEAELDALIVLGEVM 236


>gi|300858650|ref|YP_003783633.1| SOS response regulatory protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686104|gb|ADK29026.1| SOS response regulatory protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206357|gb|ADL10699.1| LexA repressor [Corynebacterium pseudotuberculosis C231]
 gi|302330913|gb|ADL21107.1| LexA repressor [Corynebacterium pseudotuberculosis 1002]
 gi|308276599|gb|ADO26498.1| LexA repressor [Corynebacterium pseudotuberculosis I19]
          Length = 235

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 16/219 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            ++I E I          PS   +   AGL  TS    + K    +G  R    +     
Sbjct: 22  QRRILEVIRDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGYLRRDPNKPRAVD 81

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +    E+         +          E     F P        S +    N      +P
Sbjct: 82  VRTLPESSASKPGRKQNLKAKKSPVPSETSPTSFIPIVGSIAAGSPILAEENVNAYYPLP 141

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +             +    +    SM       GD +++ +      G+ +      G+ 
Sbjct: 142 QDIVG-------DGELYMLEVVGESMRDAGILNGDWVVVRAQPVAEQGEFVAALID-GEA 193

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K         + L+  N  +          + + +++
Sbjct: 194 TVKEFHKDASG-VWLLPHNDAFSPI--PGDQADIMGKVV 229


>gi|221199496|ref|ZP_03572540.1| prophage transcriptional regulator [Burkholderia multivorans CGD2M]
 gi|221180781|gb|EEE13184.1| prophage transcriptional regulator [Burkholderia multivorans CGD2M]
          Length = 255

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 70/256 (27%), Gaps = 43/256 (16%)

Query: 2   TSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNK---SKRFGIEGRNRWPSTES 57
              +  +I  + + R+ E  N+T + LAR+  + P    +    KR   +   R      
Sbjct: 5   AMKTIAQIRLDNVLRLVENRNMTKADLARRIAISPQQVYQLLSYKRNIGDKLARRIE--- 61

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                            L  +    +    +   +   P      + +    P       
Sbjct: 62  -SAFDKEPGWLDQDHPYLTTATLPESSLSPEASNIRQLPARPVLAWDNEDELP---HDEY 117

Query: 118 VGVPEIRS-------------------------PHNGIYAIQTQDTRHKTQDTSMLPLYR 152
           V VP +                               +               SM P   
Sbjct: 118 VLVPRLAVKASAGNGKLVWQVDEKGQRQAFRKAWLERLGMKPEYAATIVADGMSMAPRIE 177

Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEM 209
            GD L++N         ++ +     ++  K L      ++ ++S N     YP   +  
Sbjct: 178 DGDSLVVNYKEHTIASGKVYVFTFAYELFIKRLYRGTD-AVRVVSDNPDKSRYPDWQIPA 236

Query: 210 S---DIEWIARILWAS 222
               D+  IAR++  S
Sbjct: 237 ERLNDLTVIARVVAVS 252


>gi|298486716|ref|ZP_07004773.1| Repressor protein c2 [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298158799|gb|EFH99862.1| Repressor protein c2 [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 362

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 25/235 (10%)

Query: 2   TSFSHKKIWEA----IDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWP 53
                + +  A    + +    +++ P G    L++  G+ P + +K            P
Sbjct: 131 PMVQIEDLRAAFAVRLKKALAENHIEPWGAGVRLSKMTGVTPKAASKWLNGEA-----MP 185

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP--SGSGGFFDSGVFPT 111
               +  +    N  +  L +       T+         +      +    +        
Sbjct: 186 GPAKMRSLSEELNVPLAWLQNGVDDTSMTSRSVASAPSNVAMVEQPAVMYRYPVVSTVAA 245

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167
           G     V            Y  + +    +    SM         +G +++++  ++   
Sbjct: 246 GAWMEAVESSFSDRYETTDYKAKGRAFWLEVAGDSMTAPTGVSVPEGMLILVDPGVEARP 305

Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218
           G  ++   P + +   K LI      + L  LN  Y +      D + I    R+
Sbjct: 306 GKLVVAKLPSSNEATFKKLI-DDAGQLYLKPLNPGYAMIKCT-DDCKIIGVAVRV 358


>gi|254457839|ref|ZP_05071266.1| putative phage repressor [Campylobacterales bacterium GD 1]
 gi|207085232|gb|EDZ62517.1| putative phage repressor [Campylobacterales bacterium GD 1]
          Length = 219

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 9/195 (4%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
             +A   G+   +F   K+     RN+ P  E +    A +      L            
Sbjct: 27  KDVADVLGISQMNFATMKK-----RNKVPFGELMDFCAARSISINWMLYGQSPESLVEAT 81

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
            +   +       + +GG  D       +         +    + +              
Sbjct: 82  NRFYMVKYFSNVNASAGGGADEQCEELEDLELPEQFVYMLGGESEM----KNIEAINVSG 137

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P +   DI+ +N A        +        +  K +  R    ID++S N  Y  
Sbjct: 138 DSMEPTFSYNDIVFINRAKTDLQRGGIFTIRTEAGLFIKRVQKRIDGKIDIISDNQVYST 197

Query: 205 DTVEMSDIEWIARIL 219
            T+E+++IE I R++
Sbjct: 198 QTLELNEIEVIGRVV 212


>gi|160897066|ref|YP_001562648.1| putative phage repressor [Delftia acidovorans SPH-1]
 gi|160362650|gb|ABX34263.1| putative phage repressor [Delftia acidovorans SPH-1]
          Length = 237

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 64/226 (28%), Gaps = 16/226 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           H++  +A+  + +RH    +   R+ G+   T+ +   R          S ++       
Sbjct: 14  HRQEAQALREIWDRHKPNQAEFGREFGIGGQTAVSNFLRGKS-----ALSMKAATGFATG 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK------WNTV 118
               I +      +   +   +         P            F  G+        +  
Sbjct: 69  LGCDIGEFSPRL-AREASHIAEVVAASDPSNPSEFVPVRRVDVRFSNGHGKVIYTEDDHP 127

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +   R   N +          + +  S  P    G  +++N   +             G
Sbjct: 128 PLVFRRDFLNSVGIRNGDAVVVEAEGVSNEPKIMDGSAVLVNRGDRERLAGDFFAFRVDG 187

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPV---DTVEMSDIEWIARILWA 221
           +++ K L    G  I   + N  +        +  D E I R +W 
Sbjct: 188 ELMIKRLERIDGVGILATAENSSFRPKSRIYTKAEDFEIIGRAVWV 233


>gi|163754523|ref|ZP_02161645.1| transcriptional regulator [Kordia algicida OT-1]
 gi|161325464|gb|EDP96791.1| transcriptional regulator [Kordia algicida OT-1]
          Length = 267

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 22/231 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG----RNRWPSTESIFKI 61
           H+KI + ID       L  +  +++ G+  T+ +       +     +   P  + +  I
Sbjct: 5   HEKIKQIIDHFR----LNNNSFSKRIGVTSTTIDSITNGRPQPDGSRKRTKPGYDLLTSI 60

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTG------NK 114
           +   +     L  +     +  +K+ +    +         G  +    P        + 
Sbjct: 61  IKEFDINPEYLFGISSQMFKADKKEFQTYAGIPQVVAVNQEGEENVVYVPVKARAGYLDG 120

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL 171
           +      E     +  +         + Q  SM+  +  GD++    +     V  G   
Sbjct: 121 YGDADYIETLPSFSMPHLTNGTYRCFEVQGNSMVRTFFDGDLVFGKYVEDLNDVKDGRVY 180

Query: 172 LIKPRTGDIVAKVL--ISRRGRSIDLMSLNCC--YPVDTVEMSDIEWIARI 218
           +I  R   IV K +         + L S N    YP  T+   +I  +  +
Sbjct: 181 VIVSRNDGIVLKRVINRIEERGKLILKSDNKDGNYPTYTINAEEIMEVWYV 231


>gi|313668958|ref|YP_004049242.1| transcriptional regulator [Neisseria lactamica ST-640]
 gi|313006420|emb|CBN87883.1| putative transcriptional regulator [Neisseria lactamica 020-06]
          Length = 228

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F +    G       P +E++ KI      +I  LL          
Sbjct: 18  QAKIASDIEMTIAGFGRIWNEGG-----LPKSETLKKIKKLKGCSIDWLLTGEGEPFPGA 72

Query: 84  EKKE----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134
           + ++      +                     G          + +     + I+     
Sbjct: 73  KPEKPAACDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132

Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N +         +++     ++ K L    G  
Sbjct: 133 DVKNLSVISVKGDSMEGVLNDGDSILVNHSENTPKDGLYVLRINEN-LLVKRLQIVPGGI 191

Query: 193 IDLMSLNCCYPVDTV----EMSDIEWIARILW 220
           I+++S N  YP   +       D+E I R+ W
Sbjct: 192 INVISANEAYPAFEINLNHPADDVEIIGRVEW 223


>gi|166712454|ref|ZP_02243661.1| LexA repressor [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|289662678|ref|ZP_06484259.1| LexA repressor [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289669641|ref|ZP_06490716.1| LexA repressor [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 213

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + +AR  G       +               E++ +  
Sbjct: 6   TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  T       P+             +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGQGAQTRAAAVSEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|332362850|gb|EGJ40643.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 225

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 59/224 (26%), Gaps = 14/224 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKI 61
            FSH+K    + +     NL  + + ++ G+   +++  +    E   +      +  K+
Sbjct: 1   MFSHEK----LKKRRLELNLAQASIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKV 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKK-----EKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                      L          +K+      + +       S +     S     G   +
Sbjct: 57  QENYFVDETSTLYTYPLLTPPHKKEVDQLASQLLERQRKVSSLTAYKVLSVELAAGLGHS 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                           IQ           SM P Y  G + ++        G  +     
Sbjct: 117 YYDNETDYETVYFDQDIQHD-FASWVSGDSMEPKYPNGSVALMKQTGFDYDG-AVYALMW 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            G    K +       + L S+N  Y             +  ++
Sbjct: 175 NGKTYIKKVYR-EAEGLRLESINPDYEDLFAPYEDQPSIVGIVV 217


>gi|28199016|ref|NP_779330.1| hypothetical protein PD1124 [Xylella fastidiosa Temecula1]
 gi|182681734|ref|YP_001829894.1| putative phage repressor [Xylella fastidiosa M23]
 gi|28057114|gb|AAO28979.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182631844|gb|ACB92620.1| putative phage repressor [Xylella fastidiosa M23]
          Length = 252

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 56/235 (23%), Gaps = 29/235 (12%)

Query: 13  IDRMAERHNLTPSGLARKAG---LDPTSFNKSKRFGIE-------GRNRWPSTESIFKIL 62
           I ++       P   +R+ G         ++               R            L
Sbjct: 11  IKQLVAAAG-GPVEFSRRRGAGRWSQAQVSQWISETNPKGIGHKLARAIEAELGLPNAYL 69

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-- 120
                              T E +  +      P +         +   GN         
Sbjct: 70  DRLPSVDAPHPAGQHIKLDTYEFQAIDDDEKLDPEANVLVDEVDVMLSAGNGVLIPEFIE 129

Query: 121 -----PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
                P         +         +    SM       D +++N A       ++    
Sbjct: 130 TKFRMPFPLPWLRHAHINPKDVKLMRVHGDSMERTLFDNDRVMVNFADTRIRDGKVYAIA 189

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVEMSD---IEWIARIL 219
             G+   K L + R   + ++S N          Y  + V  ++   ++ + R++
Sbjct: 190 IGGEAKVKRLYTLRNNGLRIVSDNQNKDSEGHRIYKDEIVPPNEMETVQVLGRVI 244


>gi|94994459|ref|YP_602557.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750]
 gi|94547967|gb|ABF38013.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750]
          Length = 232

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 15/223 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +        +T S L R   ++  + +  ++       +  +       + +     
Sbjct: 4   GHQLKTARLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L  P++    + K++                    +      +       + +    
Sbjct: 64  NYRLLTPYNQLTISNKEKVIGYSERLLNHQINKKSKDLIDKPSQLYAYRVYESLSAGTGY 123

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            Y                 D        SM P Y  G+++++        G  +      
Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           G    K +       + L+SLN  Y         +   I +I+
Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224


>gi|331006331|ref|ZP_08329645.1| SOS-response repressor and protease LexA [gamma proteobacterium
           IMCC1989]
 gi|330419878|gb|EGG94230.1| SOS-response repressor and protease LexA [gamma proteobacterium
           IMCC1989]
          Length = 204

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 60/217 (27%), Gaps = 35/217 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++   I +  E     P  + +A+  G                     + E
Sbjct: 1   MLKLTSRQEQVLMLIKQNIEETGYPPTRAEIAKSLGFKSA---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                          + I L         G    G    G+   
Sbjct: 46  HLRALARK-------------GAIEMVPGASRGIRLPADEAKNDPGIPIVGRVAAGSPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                +        +   + D   +    SM+ +    GD+L ++   QV  G  ++ + 
Sbjct: 93  AEEHVQDHCAMPREFFQPSADYFLEVHGESMIDVGIHDGDLLAVHQTQQVTNGQIVVARI 152

Query: 176 RTGDIVAKVLISRRGRSI-DLMSLNCCYPVDTVEMSD 211
              ++  K         I +L++ N  +    V+++ 
Sbjct: 153 -GDEVTVKRFKKGPDSHIVELIAENPDFAPIIVDLTQ 188


>gi|291519392|emb|CBK74613.1| SOS-response transcriptional repressor, LexA [Butyrivibrio
           fibrisolvens 16/4]
          Length = 204

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 56/221 (25%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I          P+   L     L  TS   +  +     G   R PS     
Sbjct: 9   KQREILEVIKTEILNRGYPPTVRELCDACNLKSTSSVHSHLETLEKNGYIKRDPSKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+  +   + + +      G     +                     +    N      
Sbjct: 69  EIVDDSFNVVRREVVNVPVVGNVAAGQP--------------------LLAIQNISEYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P    P+        Q    + +  SM+      GD +I+        GD ++      
Sbjct: 109 IPAEHMPN-------AQSFMLRVKGESMINAGILDGDTIIVMQQDTAKNGDMVVALVD-D 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K         I L   N       V+      + ++ 
Sbjct: 161 SATVKTFYK-EDGHIRLQPENDNMDPIIVDN--CVILGKVF 198


>gi|167630618|ref|YP_001681117.1| lexa repressor [Heliobacterium modesticaldum Ice1]
 gi|167593358|gb|ABZ85106.1| lexa repressor [Heliobacterium modesticaldum Ice1]
          Length = 203

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 57/225 (25%), Gaps = 34/225 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   S   K I   I     R    PS   +    GL   ++ +                
Sbjct: 1   MFELSERQKSILNYIRTEIRRRGYPPSVREIGDAVGLTSSSTVHGHLSR----------- 49

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L                +    +        L   P        S +  T N  
Sbjct: 50  ------LEKAGFIRRDPAKPRALEVLAPDDDNGVERPLIDIPIVGRISAGSPILATENIE 103

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           NT  +P         +    Q      +  SM+      GD++I+      + GD ++  
Sbjct: 104 NTFPLPLD-------FIRTDQVFILTVRGESMINAGIHDGDLVIVRIQQTADNGDIVVAL 156

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   K     +     L   N       ++  ++  + +++
Sbjct: 157 -LGDEATVKRYFKEKD-YYRLQPENDYMEPILIK--EVHILGKVI 197


>gi|134299046|ref|YP_001112542.1| putative prophage repressor [Desulfotomaculum reducens MI-1]
 gi|134051746|gb|ABO49717.1| putative prophage repressor [Desulfotomaculum reducens MI-1]
          Length = 210

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 25/213 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +   +N T   L     L   + ++     I      P   +I KI         
Sbjct: 12  KRLLELMVDNNDTTYSLGEHLHLSNATISRYTTGDI-----APKIPTIEKIAEKYGVNPA 66

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +     +    +   +    +              + +  +            
Sbjct: 67  WLTGTEGASKYVEKTMPSKKIPIIGAIAAGIPILAQENI---DGYEYIPDNVSID----- 118

Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                     + +  SM+      GDI+ +    QV  G+   +     +   K + +  
Sbjct: 119 -------FCLRVKGDSMIGARILDGDIVYIRKQPQVENGEIAAVIIDNEEATLKRIYAL- 170

Query: 190 GRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
             S+ L + N  YP       +M  I  I + +
Sbjct: 171 NGSVILRAENPNYPDKVFSKKDMKQISIIGKAI 203


>gi|323486898|ref|ZP_08092214.1| LexA repressor [Clostridium symbiosum WAL-14163]
 gi|323691942|ref|ZP_08106192.1| LexA repressor [Clostridium symbiosum WAL-14673]
 gi|323399761|gb|EGA92143.1| LexA repressor [Clostridium symbiosum WAL-14163]
 gi|323504000|gb|EGB19812.1| LexA repressor [Clostridium symbiosum WAL-14673]
          Length = 204

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 66/220 (30%), Gaps = 35/220 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
             ++I E I     +    P+   +     L  TS   +  ++    G  R   T+    
Sbjct: 9   KQREILEYIKETILKKGYPPAVREICEAVRLKSTSSVHSHLEQLEKNGYIRRDPTK---- 64

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                     + +++         ++   +PLL    +G+            N  N   +
Sbjct: 65  ---------PRTIEIIDDTFNLARREVVNVPLLGTVAAGAPILAQE------NIENYFPI 109

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P    P+        +    K +  SM+      GD +I+  A     G+ ++       
Sbjct: 110 PVEMLPN-------KEIFMLKVKGDSMIDAGIYNGDRVIVAKADTARNGEIVVALVD-DS 161

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +     L   N       +   +++ + +++
Sbjct: 162 ATVKTFYKEK-GRFRLQPQNASMDPIIL--DEVQILGKVI 198


>gi|139439633|ref|ZP_01773046.1| Hypothetical protein COLAER_02073 [Collinsella aerofaciens ATCC
           25986]
 gi|133774974|gb|EBA38794.1| Hypothetical protein COLAER_02073 [Collinsella aerofaciens ATCC
           25986]
          Length = 221

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 59/217 (27%), Gaps = 21/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I++ I    +     PS   +A   GL   S   +    +E R       +  + L 
Sbjct: 16  QQQIYDFIKEYQQEKGYPPSVREMASAVGLSSPSTVHAHLSALEARGLLKRDATKPRALE 75

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             N    +                +    L      + G          N  +T  +P  
Sbjct: 76  LFN----EDGSSVSISKSDEPTAPRGTVSLPLVGRVAAGIPI---LAEQNIEDTFTIPTE 128

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                   A        +   +SM+ +    GD +I+        G+ ++     G    
Sbjct: 129 I-------ATDQGSFILEVHGSSMINVGIFNGDYIIVREQKSAMNGEIVVAMID-GSATV 180

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K         + L   N          ++   + +++
Sbjct: 181 KTFYK-EQGRVRLQPENDTMEPIY--ATNPVILGKVV 214


>gi|84624451|ref|YP_451823.1| LexA repressor [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575920|ref|YP_001912849.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|71648696|sp|Q5GYM5|LEXA2_XANOR RecName: Full=LexA repressor 2
 gi|84368391|dbj|BAE69549.1| LexA protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520372|gb|ACD58317.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 213

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + +AR  G       +               E++ +  
Sbjct: 6   TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  T       P+             +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGQGGQTRAAAVSEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|33601254|ref|NP_888814.1| LexA repressor [Bordetella bronchiseptica RB50]
 gi|33575689|emb|CAE32767.1| LexA repressor [Bordetella bronchiseptica RB50]
          Length = 242

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 24/215 (11%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           T  +   ++I + I +   R    P  + +A+  G                  R P+   
Sbjct: 29  TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 71

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                 A    I                       L  P          G    G+    
Sbjct: 72  DHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILA 131

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               E     +     QT D   K +  SM      +GD+L +  A +   G  ++ +  
Sbjct: 132 SEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-L 190

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             ++  K L  +    I+L+  N  +    V  +D
Sbjct: 191 GDEVTVKRLQRQ-NGRIELLPENPDFAPIVVANTD 224


>gi|329996256|ref|ZP_08302436.1| repressor protein C2 [Klebsiella sp. MS 92-3]
 gi|328539440|gb|EGF65447.1| repressor protein C2 [Klebsiella sp. MS 92-3]
          Length = 219

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 31/217 (14%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC--- 70
             + +   +    LA   G+   + +           R PS E I KIL    +      
Sbjct: 10  KSLMKTKGINQEELAEHLGITKGAVSHWLNA-----RREPSLEDIAKILRFLGKNNFSVG 64

Query: 71  ------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                         +     K+  E P+L    +GS        +   +    +      
Sbjct: 65  AGGMIIDENIKGDVEYVGPYKRGNEYPVLSSVQAGSWREAIE-PYSIKDVDLWLESNAH- 122

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGD 179
                   IQ +      +  SM         +G  ++ ++  +   G  ++     + +
Sbjct: 123 --------IQGEAFWLLVEGDSMTSPVGLSIPEGTYVLFDTGREPVNGSLVIAKLSESNE 174

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              K LI   G+   L  LN  +P+  +  +    I 
Sbjct: 175 ATFKKLIIDGGQKY-LKGLNPQWPLVPINGN-CRIIG 209


>gi|320107015|ref|YP_004182605.1| LexA family transcriptional repressor [Terriglobus saanensis
           SP1PR4]
 gi|319925536|gb|ADV82611.1| transcriptional repressor, LexA family [Terriglobus saanensis
           SP1PR4]
          Length = 201

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 58/220 (26%), Gaps = 32/220 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           +   K++ + +    +++  +PS   +A+  GL+                   S  ++ K
Sbjct: 4   TRRQKEVIDFLTGFTQKNGYSPSYEEIAQGLGLN-------------------SLATVHK 44

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +           +           +  ++         S      G    G     +  
Sbjct: 45  HVTNLQ-------NKGLLQRAHNRSRSIDVLAPRTSRRMSDRLPLMGRIAAGKPVEAIEN 97

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E  S          +    + +  SM       GD +++        G+ ++      D
Sbjct: 98  AESISLSE--IIGNREVFALEVRGDSMRDEHIVNGDYVLVERTATARQGEIIVALVDGCD 155

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K      G  I L   N           ++    ++L
Sbjct: 156 ATLKRFYR-EGNMIRLQPSNAEMAPIYAPAENVVIQGKVL 194


>gi|52841492|ref|YP_095291.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628603|gb|AAU27344.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 246

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 15/225 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               +KI   I +      LT   LA     L+ +  N  +R       R P  E I ++
Sbjct: 21  MSIKEKIGLRIKQERMSKKLTMKALAELTDNLNISRINNYERGE-----RTPGPEEIKQL 75

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGV 120
             A   +   L+ L      + +       L       +             +    + +
Sbjct: 76  ARALEVSPSFLMCLSDDRQGSFKTPGLGGLLPILDYKSACYPALVIQRIKEESYSEKLDL 135

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-D 179
             I S       I         +D SM P ++  DILI++   Q N GD ++ +     +
Sbjct: 136 IPISSTVQKR--IGKNAFALAVKDESMAPEFKFDDILIVDPDTQPNPGDYIVARLENEPE 193

Query: 180 IVAKVL----ISRRGRSIDLMSLNCCYPVDTVEMSDIEW-IARIL 219
           I+ +      +S+     +L+++N  +P   +     E  I  ++
Sbjct: 194 IIIRKFKQLSVSKEKPEFELVAINNDWPDVKISKELNEIFIGSVI 238


>gi|33596638|ref|NP_884281.1| LexA repressor [Bordetella parapertussis 12822]
 gi|33573339|emb|CAE37323.1| LexA repressor [Bordetella parapertussis]
          Length = 242

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 24/215 (11%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           T  +   ++I + I +   R    P  + +A+  G                  R P+   
Sbjct: 29  TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 71

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                 A    I                       L  P          G    G+    
Sbjct: 72  DHLKALARKGAIELTAGASRGIRLKVPDNAAPSAQLTHPLLAQLVLPLVGRVAAGSPILA 131

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               E     +     QT D   K +  SM      +GD+L +  A +   G  ++ +  
Sbjct: 132 SEHVEREVGVDPGLFTQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-L 190

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             ++  K L  +    I+L+  N  +    V  +D
Sbjct: 191 GDEVTVKRLQRQ-NGRIELLPENPDFSPIVVANTD 224


>gi|171463202|ref|YP_001797315.1| transcriptional repressor, LexA family [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192740|gb|ACB43701.1| transcriptional repressor, LexA family [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 239

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 20/218 (9%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +    +I E I +  +   L P  + +A + G              E   R      
Sbjct: 16  PKLTPRQNEILELITKAIDESGLPPTRAEIATQLGFASA-------NAAEEHLRTL---- 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K          + + +P    +T    +     L             G    G+    
Sbjct: 65  AKKGYIELTPGTSRGIRIPQRFNQTHNSNKYRQLSLPSGALQQLTLPLIGRVAAGSPIMA 124

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           V   E   P +     ++ D   K +  SM       GD L +    +V  GD ++ +  
Sbjct: 125 VEHIEKHVPIDPSLFSKSADYLLKVKGMSMRDAGILDGDYLAVRKTTEVRNGDIVVARLD 184

Query: 177 TGDIVAKVLISR---RGRSIDLMSLNCCYPVDTVEMSD 211
             ++  K    +    G  I+L + N  +    V+   
Sbjct: 185 -DEVTVKRWQQKKTANGIVIELQAENPDFKNILVDDRQ 221


>gi|182419527|ref|ZP_02950777.1| LexA repressor [Clostridium butyricum 5521]
 gi|237668516|ref|ZP_04528500.1| LexA repressor [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376614|gb|EDT74188.1| LexA repressor [Clostridium butyricum 5521]
 gi|237656864|gb|EEP54420.1| LexA repressor [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 201

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 59/221 (26%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
              +I+E +    E     PS   +     L  TS      KR   +G   R PS     
Sbjct: 7   KQSEIYEFLKNYTENKGYPPSVREICEAVSLKSTSTVHGHLKRLEKKGLIRRDPSKPRAL 66

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I   +                     +KE+  +      + G        T N  +T  
Sbjct: 67  EIAELS-------------------TPKKEMISIPIVGKITAGLPI---LATENVEDTFS 104

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P     H        +    +    SM+       D+ I+        G+ ++      
Sbjct: 105 LPLDFIKH------DKELFMLRVSGQSMIKAGINDKDLAIIERCNDAVNGEIVVALID-D 157

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K         I L   N       V   D   + +++
Sbjct: 158 SATIKRFFKEEN-HIRLQPENDTMDPIIV--DDCSILGKLV 195


>gi|110801397|ref|YP_695810.1| LexA repressor [Clostridium perfringens ATCC 13124]
 gi|168211846|ref|ZP_02637471.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|169344268|ref|ZP_02865249.1| LexA repressor [Clostridium perfringens C str. JGS1495]
 gi|123344807|sp|Q0TRD0|LEXA_CLOP1 RecName: Full=LexA repressor
 gi|110676044|gb|ABG85031.1| LexA repressor [Clostridium perfringens ATCC 13124]
 gi|169297599|gb|EDS79700.1| LexA repressor [Clostridium perfringens C str. JGS1495]
 gi|170710212|gb|EDT22394.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
          Length = 203

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 59/221 (26%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59
              +I+  +    +     PS   + +   L  TS      KR   +G   R P+     
Sbjct: 9   KQTQIYNFLIEFTKSKGYPPSVREICQAVSLKSTSTVHGHLKRLEKKGLIYRDPTKPRAL 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+  +N                      E   L   P          +  T N  +   
Sbjct: 69  EIVELSN----------------------EEKELIDIPIVGKVTAGMPILATENIEDMFQ 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P     HN            K    SM       GD+ I+        GD ++      
Sbjct: 107 IPINYVKHNN------DLFILKVTGDSMIEAGILDGDLAIIEQKNVATNGDIVVALI-EN 159

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N  Y    V   D   + +++
Sbjct: 160 EATIKRFFK-ENGFIRLQPENKNYEPIIV--EDCSILGKLV 197


>gi|73542066|ref|YP_296586.1| peptidase S24, S26A and S26B [Ralstonia eutropha JMP134]
 gi|72119479|gb|AAZ61742.1| Peptidase S24, S26A and S26B [Ralstonia eutropha JMP134]
          Length = 421

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 25/223 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG---------------RNRWPST 55
           + I  +    +L    LA+   ++P                              +W   
Sbjct: 197 DRIALVMAEQHLDVQQLAQLLAVEPAVVRAWLEPDSPKLGLLHAVRLQDAYGYSPKWLIN 256

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 L    E       L F      +   ++IP+      G  G F    +P G+  
Sbjct: 257 GQGEPKLGGAIEPELDEPSLAFDVFPIPQNSFRKIPVRGMAQLGDNGHFVDIEYPVGHGD 316

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
             V  P                   +    SM P  +  + +++    Q+  GD +L K 
Sbjct: 317 GYVFFPTK----------DPDAYALRCNGESMRPRVKHNEFVVVEPNTQIQNGDEVLAKS 366

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           + G ++ K L   R   + L S+N  + +  +    IE +  +
Sbjct: 367 QDGRVMVKELAYIRDGIVHLSSVNERHGMVRIPQDQIERLHFV 409


>gi|15675164|ref|NP_269338.1| putative repressor protein [Streptococcus pyogenes M1 GAS]
 gi|21910376|ref|NP_664644.1| putative repressor protein [Streptococcus pyogenes MGAS315]
 gi|28895952|ref|NP_802302.1| repressor protein [Streptococcus pyogenes SSI-1]
 gi|71903551|ref|YP_280354.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180]
 gi|139473727|ref|YP_001128443.1| phage repressor-like protein [Streptococcus pyogenes str. Manfredo]
 gi|209559469|ref|YP_002285941.1| Putative repressor protein [Streptococcus pyogenes NZ131]
 gi|13622327|gb|AAK34059.1| putative repressor protein [Streptococcus pyogenes M1 GAS]
 gi|21904573|gb|AAM79447.1| putative repressor protein [Streptococcus pyogenes MGAS315]
 gi|28811202|dbj|BAC64135.1| putative repressor protein [Streptococcus pyogenes SSI-1]
 gi|71802646|gb|AAX71999.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180]
 gi|134271974|emb|CAM30212.1| putative phage repressor-like protein [Streptococcus pyogenes str.
           Manfredo]
 gi|209540670|gb|ACI61246.1| Putative repressor protein [Streptococcus pyogenes NZ131]
          Length = 232

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 15/223 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +        +T S L R   ++  + +  ++       +  +       + +     
Sbjct: 4   GHQLKTARLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L  P++    + K++                    +      +       + +    
Sbjct: 64  NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            Y                 D        SM P Y  G+++++        G  +      
Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           G    K +       + L+SLN  Y         +   I +I+
Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224


>gi|313498878|gb|ADR60244.1| LexA repressor [Pseudomonas putida BIRD-1]
          Length = 205

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 66/216 (30%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + + K+  I+E I      H   PS   +A + G    S  +                
Sbjct: 4   MDTLTPKRRAIFEFIHERIAEHGQPPSLADIATRFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K + A  +     +    + G    +  +   +L  P  G          P G   +
Sbjct: 48  ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILEIPVLGQVA----AGAPIGPDLD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
                  +   +     +T D   K +  SM+      GD++ +        G  ++ + 
Sbjct: 101 IHE----QLLLDPSLFRRTPDYLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L    G +  L+  N  Y    V+   
Sbjct: 157 D-GEVTIKRLQRL-GGTYRLLPRNPAYAPIDVQPEQ 190


>gi|294012616|ref|YP_003546076.1| putative phage repressor [Sphingobium japonicum UT26S]
 gi|292675946|dbj|BAI97464.1| putative phage repressor [Sphingobium japonicum UT26S]
          Length = 220

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 8/218 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   +D    +   T S ++R  G +P    +  + G   R       +I + L  + 
Sbjct: 3   EDVRALLDEKIAQSKATYSDISRLIGRNPAYIQQFIKRGTPRRLDEQDRRTIARFLGISE 62

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +  L          ++             + +G              ++V +      
Sbjct: 63  HLLSGLPLEGAEPAPPSKPARSVSVPRLSLGASAGAGALDIDESAS---DSVAIDSRWLQ 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVL 185
             G+       +  +    SM P    GD ++++ +       D + +      ++ K +
Sbjct: 120 EIGV--RPPYVSIIRVDGESMTPTLNHGDEIMVDHSDNMSRLRDGIYVLRLDDVLLVKRV 177

Query: 186 IS-RRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILWA 221
               R     ++S N  YP  T V    +  + R++W+
Sbjct: 178 AMGLRRDEFSILSDNSLYPNRTNVNPELVTIVGRVVWS 215


>gi|91214797|ref|ZP_01251770.1| transcriptional regulator, putative [Psychroflexus torquis ATCC
           700755]
 gi|91187224|gb|EAS73594.1| transcriptional regulator, putative [Psychroflexus torquis ATCC
           700755]
          Length = 257

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 14/226 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +    +I     ++ E +N T S  A    +  ++ +  +R     +        + K
Sbjct: 1   MKTDLPPEIKRF-KQIREENNFTQSEFAEILNIKNST-SDIERGKT--KLSGQVIMMLLK 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-----TGNKW 115
           +L      +         +        K I +       +    +           G+  
Sbjct: 57  VLEVNPLWLFGESFQKKLNVHHINSMPKIISMDETKSRENMLLVNQKAAAGYPQNIGDAE 116

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLI 173
               +P    P              + +  SM P     D ++  S   +      ++ +
Sbjct: 117 WYHQLPAFEMPIPQF--RNATYRGFQVEGDSMEPNLHPEDWVLGKSVESLQQALNHKVYV 174

Query: 174 KPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSDIEWIARI 218
                 ++ K L        I L+S N  YP   VE S+I+ I  +
Sbjct: 175 FVLQDSVLVKKLHKHPNSHKISLISTNSYYPPYEVEASEIQEIWEV 220


>gi|300777929|ref|ZP_07087787.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
 gi|300503439|gb|EFK34579.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
          Length = 262

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 67/226 (29%), Gaps = 21/226 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+ FS+      I  +  R  L+   +A +  +    ++K +    E     P  E + K
Sbjct: 1   MSVFSN-----NIRFLRARRKLSQQNVADELMISRVRYSKYENGISE-----PPIELLVK 50

Query: 61  ILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--N 113
           I    + +I       L   P  +          +P+                   G   
Sbjct: 51  ISKYFHVSIDLILSVDLEKHPVDEMLKLPDNRIVLPVAVDTQGNDTIEIIPQKASMGYLE 110

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170
            ++ +   E        +    +         SM P +R G  ++   +    ++  G  
Sbjct: 111 GYSDIEYIESLQRIALPFLNNGKYRAFPADGDSM-PPFRSGSYIVGKYVEGINELKEGKT 169

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            +       I  K    R+  +I + + N  Y    +   ++  I 
Sbjct: 170 YVFVTLNDGITYKRFKERKENAICVSADNSFYEPYDIPFEEVVEIW 215


>gi|262279647|ref|ZP_06057432.1| peptidase S24 S26A and S26B [Acinetobacter calcoaceticus RUH2202]
 gi|262259998|gb|EEY78731.1| peptidase S24 S26A and S26B [Acinetobacter calcoaceticus RUH2202]
          Length = 223

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 59/221 (26%), Gaps = 12/221 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +     +   T + +A    +   ++   +        +      I + L      
Sbjct: 3   LKDRLKDSRLKAKKTQAEVAEAVKMSQPAYQALESGKN---LKSAFLPLIAQFLGVDGYW 59

Query: 69  ----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPE 122
                 +           T    +      +       F           ++ +   +P 
Sbjct: 60  LTTGNTEDSFRESDVFSPTVVSAESTDQYVWIEVVEASFSCGTGESIEFHFDAINGKIPF 119

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             S        Q      K +  SM    + GD++ ++ +        +      G+ + 
Sbjct: 120 PASFFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMI 179

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
           K +      S+ L SLN  +    V      + + + R  W
Sbjct: 180 KQIFKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220


>gi|163868319|ref|YP_001609528.1| LexA repressor [Bartonella tribocorum CIP 105476]
 gi|161017975|emb|CAK01533.1| SOS response regulator lexA protein [Bartonella tribocorum CIP
           105476]
          Length = 237

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 63/230 (27%), Gaps = 14/230 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--------GLARKAGLDPTSFNKSKRFGIEGRN-R 51
           M +    ++   I    +   + PS         L+ K+G+        +R  I     R
Sbjct: 1   MLTCKQYELLLFIHNHIKETGVPPSFEEMKNALELSSKSGIHKLIIALEQRGFIRRLPNR 60

Query: 52  WPSTESIF---KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
             + E I    KI    +        +   + R   K              +      G 
Sbjct: 61  ARAVEVIRLPEKITFNLSLARKISPSMIEKNKREISKNLINSDNFEAEEIKNITIPIMGR 120

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC 167
                  + +                 +    + +D SM        D +I+        
Sbjct: 121 ISASVPASAIQQQTSTLSLPHDMVNTGEHYALEVKDNSMVEAGILDKDTIIVKRQNTAIS 180

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           G+ ++      +   K    + G S+ L + N  Y V T +   +E   +
Sbjct: 181 GEIIVAFIDKKEATLKRYRRK-GTSVALEAANPHYEVRTYKSDRVEIQGK 229


>gi|83644889|ref|YP_433324.1| LexA repressor [Hahella chejuensis KCTC 2396]
 gi|123767473|sp|Q2SKC5|LEXA_HAHCH RecName: Full=LexA repressor
 gi|83632932|gb|ABC28899.1| LexA repressor [Hahella chejuensis KCTC 2396]
          Length = 200

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 64/225 (28%), Gaps = 40/225 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I    E     P  + ++ + G                R+   + E
Sbjct: 1   MIKLTKRQEQVLQLIREHIEETGYPPTRAEISNRLGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                               L    + + G    G    G    
Sbjct: 46  HLKALAKK--------------GAIEMVPGASRGIRLPASETQNQGIPIVGQVAAGYPIL 91

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E        +   + D   + +  SM  +    GD+L ++    ++ G  ++ + 
Sbjct: 92  AQENIEEYCELPPSFFTPSADYFLRVKGMSMKDVGILDGDLLAVHRTTDIHNGQIVVARI 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
              ++  K    ++   + L+  N  +    V +S    DIE + 
Sbjct: 152 -GDEVTVKRFQRQKN-KVLLLPENEEFEPIEVNLSQQPLDIEGLG 194


>gi|58582565|ref|YP_201581.1| LexA repressor [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427159|gb|AAW76196.1| LexA [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 225

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + +AR  G       +               E++ +  
Sbjct: 18  TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 65

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  T       P+             +   P G    +     
Sbjct: 66  AIRRVPGQARGIRLAGQGGQTRAAAVSEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 123

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 124 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 180

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 181 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 209


>gi|163791100|ref|ZP_02185520.1| LexA repressor [Carnobacterium sp. AT7]
 gi|159873656|gb|EDP67740.1| LexA repressor [Carnobacterium sp. AT7]
          Length = 207

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 13/115 (11%), Positives = 31/115 (26%), Gaps = 10/115 (8%)

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
             +       +   +P      N              +  SM+      GD +I+     
Sbjct: 94  EPILAVEEATDYFPLPPNLQFEN------ESLFMLTIRGESMINAGIFDGDEVIIRKQGT 147

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            N GD ++      +   K           L   N       +  +++  + +++
Sbjct: 148 ANNGDIVIAMTVDDEATCKRFYKEED-HYRLQPENDTMSPILL--NELTILGKVI 199


>gi|153814905|ref|ZP_01967573.1| hypothetical protein RUMTOR_01120 [Ruminococcus torques ATCC 27756]
 gi|317500417|ref|ZP_07958641.1| LexA repressor [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089576|ref|ZP_08338475.1| LexA repressor [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847936|gb|EDK24854.1| hypothetical protein RUMTOR_01120 [Ruminococcus torques ATCC 27756]
 gi|316898172|gb|EFV20219.1| LexA repressor [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404944|gb|EGG84482.1| LexA repressor [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 205

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 59/221 (26%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I     +    P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQQEILEYIKSQILQRGFPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL        + +                       P          +    N  +   
Sbjct: 69  EILDDMFNLTRREMVH--------------------VPIIGQVAAGEPILAQENIEDYWP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           VP  R P+        Q    K +  SM+      GD++++      + GD ++      
Sbjct: 109 VPADRMPN-------KQTFFLKVKGESMINAGILDGDMVLVEEDSTASNGDMVVALI-ED 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N       V+   +  + +++
Sbjct: 161 GATVKTFYKEE-GVFRLQPENDFMDPIIVKN--VTILGKVI 198


>gi|92117927|ref|YP_577656.1| putative phage repressor [Nitrobacter hamburgensis X14]
 gi|91800821|gb|ABE63196.1| putative phage repressor [Nitrobacter hamburgensis X14]
          Length = 220

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 61/211 (28%), Gaps = 16/211 (7%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATNETICQLLD 74
            ++   + +GLA+  G  P++     +   E + R      E +        +T      
Sbjct: 11  LKKPGKSQTGLAKALGRAPSAITSLLKGTRELKAREIPIVKEYLESAPPPPKQTKIIHPS 70

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
            P     T   +                   D G F  G+  + V  P          A 
Sbjct: 71  GPEQSEVTKVSEGWPNTGERTVSVRGVAVGGDDGFFYFGDVIDRVKRPPGI-------AN 123

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-----IVAKVLISR 188
                       SM P +  G+++ +         D ++      +        K L+ R
Sbjct: 124 AKDVEALNVAGESMAPRFGPGELIYIQLRPPAPGDDIVVEIYPEKEGDQSKGFLKRLVRR 183

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G  +     N        +M +++ + R+L
Sbjct: 184 TGLRLYCQQFNP-PADIEFDMGEVKNVWRVL 213


>gi|168483735|ref|ZP_02708687.1| phage transcriptional repressor [Streptococcus pneumoniae
           CDC1873-00]
 gi|168484791|ref|ZP_02709736.1| phage transcriptional repressor [Streptococcus pneumoniae
           CDC1873-00]
 gi|169833944|ref|YP_001693453.1| phage transcriptional repressor [Streptococcus pneumoniae
           Hungary19A-6]
 gi|307066657|ref|YP_003875623.1| putative transcriptional regulator [Streptococcus pneumoniae AP200]
 gi|168996446|gb|ACA37058.1| phage transcriptional repressor [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172042015|gb|EDT50061.1| phage transcriptional repressor [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042931|gb|EDT50977.1| phage transcriptional repressor [Streptococcus pneumoniae
           CDC1873-00]
 gi|306408194|gb|ADM83621.1| Predicted transcriptional regulator [Streptococcus pneumoniae
           AP200]
          Length = 251

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 32/247 (12%)

Query: 1   MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M++   K+I+ A ++++     +  + L    GL  T+     +       R    E + 
Sbjct: 1   MSNNKSKEIFSANLEKLMTSRGVDRNKLCSDLGLKYTTVRDWLKGIT--YPRIGKIELLA 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKK--------------EKEIPLLYFPPSGSGGFFD 105
                    + +       + +                    ++  +L +         +
Sbjct: 59  DYFGVNKSDLIEDKTQEVKEVKIPTSPLVQKVTEKVVKLSTPRKQKVLNYANEQLKEQNN 118

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRK 153
             +      +      ++ +     Y                 D        SM P Y  
Sbjct: 119 KVIMIEEKLFEYKVYEKLSAGTGFSYFNDGNYDTVFYDKDLDHDFASWVFGDSMEPKYMN 178

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDI 212
           G+++++        G  +      G    K +   +   + L+S+N  Y         D 
Sbjct: 179 GEVVLIKETGFDYDG-AVYAVDWDGQTYIKKVYKEKDG-LRLVSINNKYKDKFAPFEEDP 236

Query: 213 EWIARIL 219
             I +I+
Sbjct: 237 RIIGKIV 243


>gi|225567993|ref|ZP_03777018.1| hypothetical protein CLOHYLEM_04066 [Clostridium hylemonae DSM
           15053]
 gi|225163281|gb|EEG75900.1| hypothetical protein CLOHYLEM_04066 [Clostridium hylemonae DSM
           15053]
          Length = 205

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I          P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQQEILEYIKAQILERGFPPAVRDICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL  +     + +                       P          +    N  N   
Sbjct: 69  EILDDSFNFTRREMVN--------------------VPILGRVAAGEPILAEQNIENYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         Y    Q    K +  SM+      GD +++        G+ ++      
Sbjct: 109 IPME-------YMPNKQTFMLKVKGESMINAGILDGDYVLVEERKTARNGEMVVALVD-D 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K         I L   N       V   D++ + +++
Sbjct: 161 GATVKTFYKEE-GIIRLQPQNDTMDPIIVR--DVQILGKVI 198


>gi|154504420|ref|ZP_02041158.1| hypothetical protein RUMGNA_01924 [Ruminococcus gnavus ATCC 29149]
 gi|153795349|gb|EDN77769.1| hypothetical protein RUMGNA_01924 [Ruminococcus gnavus ATCC 29149]
          Length = 205

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59
             ++I E I          P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQREILEYIKSQILERGFPPAVREICEAVNLKSTSSVHSHLETLERNGYIHRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL                      +       +   P          +    N  N   
Sbjct: 69  EILDD--------------------EFNLLRREVVNVPLIGRVAAGEPLLAQENIENYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P    P+        Q    + +  SM+      GD++++        GD ++      
Sbjct: 109 IPVEMMPN-------KQTFLLEVKGESMVNAGILDGDMVLVQEEHTAENGDMVVALI-ED 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K         I L   N       V+  D+  I +++
Sbjct: 161 GATVKTFYREE-GIIRLQPENDFMDPIIVK--DVSIIGKVI 198


>gi|241765209|ref|ZP_04763193.1| SOS-response transcriptional repressor, LexA [Acidovorax
           delafieldii 2AN]
 gi|241365138|gb|EER60010.1| SOS-response transcriptional repressor, LexA [Acidovorax
           delafieldii 2AN]
          Length = 224

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 18/219 (8%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +   ++I + I     R    P  + +A + G              E   +  + + 
Sbjct: 5   PKLTARQQQILDLIQTAIARTGAPPTRAEIATELGFKSA-------NAAEEHLQALARKG 57

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + ++++ T+  I    +   S       +      L  P          G    G+    
Sbjct: 58  VIELVSGTSRGIRLRSETVRSINAARGTQFS----LPLPGLSQLVLPLVGRVAAGSPILA 113

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               +              D   K +  SM       GD+L + +  +   G  ++ +  
Sbjct: 114 QEHVDQTYSVENSLFQHKPDYLLKVRGMSMRDAGIMDGDLLAVQATREARNGQIVVAR-L 172

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
             D+  K L  R   SI+L+  N  YP+  V+  ++  I
Sbjct: 173 GDDVTVKRL-RRTASSIELLPENPDYPIIVVQPGEVFEI 210


>gi|218132482|ref|ZP_03461286.1| hypothetical protein BACPEC_00341 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992592|gb|EEC58594.1| hypothetical protein BACPEC_00341 [Bacteroides pectinophilus ATCC
           43243]
          Length = 206

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 52/218 (23%), Gaps = 31/218 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I E I          PS   +     L  TS                S  +  + L
Sbjct: 9   KQSEILEYIKNQIVNKGYPPSVRDICEAVHLKSTS----------------SVHAHLETL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P          G    G     V    
Sbjct: 53  EKNGYIRRDPTKPRAIEIIDDNFNLTRREVVNVP--------LIGQVAAGQPILAVENIT 104

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    +   ++      +  SM+ +    GD++I+      + G+ ++         
Sbjct: 105 NYFPIPAEFLNNSETFMLNVKGDSMINMGIYDGDMIIVRRQQTADNGEVIVALVD-DSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V+   +E + +++
Sbjct: 164 VKRFYK-EDGHYRLQPENDFMDPIIVDN--VEIVGKVI 198


>gi|330985775|gb|EGH83878.1| peptidase [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 203

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 61/210 (29%), Gaps = 22/210 (10%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   +A + G+ P +             R P  E I + L              
Sbjct: 1   METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELG-------LPI 48

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNGI--YAI 133
            +      +           PS    +        G     V   P   S    I  Y  
Sbjct: 49  LTTSIPASEPGMHNVEPMVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISDYKA 108

Query: 134 QTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISR 188
           + +      +  SM         +G ++++++ I+   G  ++   P + +   K L+  
Sbjct: 109 KGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATYKKLVED 168

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                 L  LN  YP   V   + + I  I
Sbjct: 169 -AGRYFLKPLNPAYPTLAVT-EECKLIGVI 196


>gi|153948175|ref|YP_001401217.1| repressor protein C2 [Yersinia pseudotuberculosis IP 31758]
 gi|152959670|gb|ABS47131.1| repressor protein C2 [Yersinia pseudotuberculosis IP 31758]
          Length = 236

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 65/209 (31%), Gaps = 27/209 (12%)

Query: 28  ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT---- 83
           A+  G+   S  K +    +     P  E++ ++    + T   +L       +      
Sbjct: 40  AKAIGVSRVSVTKWESGITK-----PDGENLHRLAQTLSCTPEWILYGTGDLRQADDTNL 94

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
                    +    S   G +       G       + ++    +    +         +
Sbjct: 95  MPATVVPTAIPIISSVQAGVWTDTFSAVG-------ISDVLRWCSTTVKVSDSAFALDVR 147

Query: 144 DTSM-----LPLYRKGDILILNS---AIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSID 194
             SM     LP   +G  +I+     +I+   G  +++    + +   K L+        
Sbjct: 148 GESMTNPNGLPSIPEGSTVIVEPNYGSIEDLYGKIVVVIIDGSSETTIKKLVVDGPNKY- 206

Query: 195 LMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           LM LN  +    ++ +    + +++  +Q
Sbjct: 207 LMPLNPNFKPIEIKGN-YRILGKVVQVTQ 234


>gi|227512434|ref|ZP_03942483.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus buchneri ATCC 11577]
 gi|227084407|gb|EEI19719.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus buchneri ATCC 11577]
          Length = 232

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 61/219 (27%), Gaps = 28/219 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAA----- 64
           + +  + +++++  + LA   G     S ++ +      +   P  E I  +        
Sbjct: 4   QNLRYLRKKNHMNQTELAHYLGRKSVASVSEWEAGKYTPKL--PILEKIAALFKVQANDL 61

Query: 65  ---------------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                          +  T               ++ + +                +GV 
Sbjct: 62  LQYDLSRLNKSRDILSMYTQLVPERQQHVYEVIAQELQHQRDAAKVVELPLEILNIAGVA 121

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
             G     V     R   N    +   D   K    SM P +    + ++  A +   G 
Sbjct: 122 SAGTGEELVD---ERDQINYRGQLPKFDFAIKINGDSMEPRFHDQQVALVKKAFEAENGQ 178

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
            ++     G    K       ++  L+SLN  Y    V+
Sbjct: 179 IVIAYVD-GRSYIKQF-EHTEQTCRLISLNRKYAPIEVQ 215


>gi|313677598|ref|YP_004055594.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312944296|gb|ADR23486.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 256

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 17/218 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  + +    T   LA + G+        +    +     P  +++ K+    N +
Sbjct: 4   INNNIKYLRKEKGWTQQDLADELGVKRPQIGSYEEGRAD-----PRIQTLLKLSDLFNVS 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L             K+    L     S      +         +             
Sbjct: 59  VDDL-LGKDLSSPMVVTKKPTKVLAITVDSQERENIELVPQKASAGYTNGYADPEYLQEL 117

Query: 129 GIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDI 180
             + +      +     +    SMLP    G I+I   + S   +  G   +I      +
Sbjct: 118 PRFQLPNLPRNSTYRAFEISGDSMLP-LEPGTIIIGEYVESPDSIRNGKTYIIVSEQEGV 176

Query: 181 VAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           V K +   +     + ++S N  Y    + +  +  I 
Sbjct: 177 VYKRVFNYAEEKGVLFMVSDNTVYSPYEIPIESVMEIW 214


>gi|150397120|ref|YP_001327587.1| putative phage repressor [Sinorhizobium medicae WSM419]
 gi|150028635|gb|ABR60752.1| putative phage repressor [Sinorhizobium medicae WSM419]
          Length = 238

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 62/235 (26%), Gaps = 31/235 (13%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE--GRNRWPSTESIFKILAAT 65
           ++ + +        +  S LA   G+      +SK    +   + R  S + I  +    
Sbjct: 7   ELKQWLAEKLAARGV-ASKLAEATGMSNDKITRSKELHSDDPKKRRQISLQEIEAMARFF 65

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--------------- 110
            E       +       +     +       P     F      P               
Sbjct: 66  RELPPGFEQMTRWLEDLSPAPTAKPIPNASFPPRWQQFPGDASIPLRGHIAAGANGRFIM 125

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-D 169
            G    TV  P       G YA        +    S  P +  G+   +N   +V  G D
Sbjct: 126 NGQDIATVFCPPGLEGVEGAYA-------VQVDGRSGEPRFLHGETAWVNPHQKVRQGDD 178

Query: 170 RLLIKPRTGDI--VAKVLISRRGRSIDLMSLNC---CYPVDTVEMSDIEWIARIL 219
            ++      ++    K  +SR    + L   N               +  + +++
Sbjct: 179 VVVQILEDDELSSYLKRFVSRSADVLRLYQYNPGKGESHDLEFPTDKVFSVHKVV 233


>gi|283456410|ref|YP_003360974.1| LexA repressor [Bifidobacterium dentium Bd1]
 gi|283103044|gb|ADB10150.1| LexA repressor [Bifidobacterium dentium Bd1]
          Length = 164

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 12/142 (8%)

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
              T     + I   +  P          +    +  + + +PE  +             
Sbjct: 28  PFPTGVDSSESIMASHDVPLVGRIAAGVPITAEQHIDDVMRLPERLTGT-------GNLF 80

Query: 139 RHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
             +    SM+      GD +++        GD +       +   K    +    + L+ 
Sbjct: 81  MLEVHGDSMIDAAICDGDFVVVREQHTAENGDIVAALLD-DEATVKTF-RKDHGHVWLIP 138

Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
            N  Y     + +  E + +++
Sbjct: 139 HNPAYSPI--DGTHAEIMGKVV 158


>gi|300781015|ref|ZP_07090869.1| repressor LexA [Corynebacterium genitalium ATCC 33030]
 gi|300532722|gb|EFK53783.1| repressor LexA [Corynebacterium genitalium ATCC 33030]
          Length = 223

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 57/217 (26%), Gaps = 20/217 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I E I          PS   +   AGL  TS    +   +E +       +  + + 
Sbjct: 18  QRRILEVIQDAVVLRGYPPSIREIGDAAGLQSTSSVAYQLKELEKKGFLRRDPNKPRAVD 77

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             +                     + IP++    +G+            N      +PE 
Sbjct: 78  LRHLPENGRKKRKADPKPDDAAPPRYIPVVGQIAAGNPI------LAEENVDGYFPLPEE 131

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                            +    SM       GD + + +      G  +      G+   
Sbjct: 132 LVG-------DGDLYLLQVVGESMRDAGILDGDWVAVRTQPVAEEGQFVAALI-EGEATV 183

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K         + L+  N  +     +  D E +  ++
Sbjct: 184 KEFHRDSSG-VWLLPHNEAFAPI--KGDDAEIMGLVV 217


>gi|119478465|ref|ZP_01618450.1| LexA repressor [marine gamma proteobacterium HTCC2143]
 gi|119448551|gb|EAW29798.1| LexA repressor [marine gamma proteobacterium HTCC2143]
          Length = 199

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 40/215 (18%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  + ++  +   I    E     P  + +AR+ G        +    ++   R  + E
Sbjct: 1   MTKLTQRQSEVLAVIKHHIEESGFPPTRADIARELGFKSA---NAAEEHLKALARKGAIE 57

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            I                                         + G    G    G+   
Sbjct: 58  MIAGASRG------------------------------IRLPENKGIPIVGQVAAGSPIL 87

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                +        +     D   + +  SM+ +   + D+L ++       G+ ++ + 
Sbjct: 88  AQEHIDDYCEMPASFFSPHADYFLRVKGDSMIDIGIFEDDLLAVHKTDNAENGEIVVARI 147

Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEM 209
              ++  K L   R +  I L+  N  Y    V++
Sbjct: 148 D-DEVTVKRLKRTRSKYQILLLPENQDYQPIEVDL 181


>gi|85059205|ref|YP_454907.1| phage repressor [Sodalis glossinidius str. 'morsitans']
 gi|84779725|dbj|BAE74502.1| phage repressor [Sodalis glossinidius str. 'morsitans']
          Length = 240

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 22/233 (9%)

Query: 2   TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           T  + ++  +A  +  +     +   LT   +A   G+   +                + 
Sbjct: 5   TPLTPEQQADAARLKALYELKKKELGLTQYTIADHLGISQGAVGHYLNGRNP-----LNV 59

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
               +  +    +I                              +  +        G   
Sbjct: 60  PIASEFASLLKVSIGDFSPSLAQTISQYLINNASNACNMSAFKKAYDYPLFSTIQAGFFT 119

Query: 116 NT---VGVPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVN 166
           N      + + R   +            + +  SM       P + +G +++++    V 
Sbjct: 120 NEAKAFSLSDARDWVSTTRKASDNAFWLEVEGHSMTSPAGSRPSFPEGMLILVDPKELVE 179

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            GD  +      D   K  I   G  + L  LN  +P+ T      + + +++
Sbjct: 180 PGDFCIASMDGCDFTFKRYIKD-GGILYLEPLNPHFPLLTCN-ESCQLVGKVI 230


>gi|18310143|ref|NP_562077.1| LexA repressor [Clostridium perfringens str. 13]
 gi|168208151|ref|ZP_02634156.1| LexA repressor [Clostridium perfringens E str. JGS1987]
 gi|25453093|sp|Q8XL81|LEXA_CLOPE RecName: Full=LexA repressor
 gi|18144822|dbj|BAB80867.1| LexA repressor [Clostridium perfringens str. 13]
 gi|170660574|gb|EDT13257.1| LexA repressor [Clostridium perfringens E str. JGS1987]
          Length = 203

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 59/221 (26%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59
              +I+  +    +     PS   + +   L  TS      KR   +G   R P+     
Sbjct: 9   KQTQIYNFLIEFTKSKGYPPSVREICQAVSLKSTSTVHGHLKRLEKKGLIYRDPTKPRAL 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+  +N                      E   L   P          +  T N  +   
Sbjct: 69  EIVELSN----------------------EEKELIDIPIVGKVTAGMPILATENIEDMFQ 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P     HN            K    SM       GD+ I+        GD ++      
Sbjct: 107 MPINYVKHNN------DLFILKVTGDSMIEAGILDGDLAIIEQKNVATNGDIVVALI-EN 159

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N  Y    V   D   + +++
Sbjct: 160 EATIKRFFK-ENGFIRLQPENKNYEPIIV--EDCSILGKLV 197


>gi|315149857|gb|EFT93873.1| helix-turn-helix protein [Enterococcus faecalis TX0012]
          Length = 273

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 75/243 (30%), Gaps = 34/243 (13%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +    +  N++   +A + G+  ++  + ++  IE         +I KIL  T E
Sbjct: 33  KVGERMKLRRKELNISADKIADELGVSRSTIFRYEKGDIEKLPTE-RLITIAKILKTTPE 91

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---------WNTV 118
            +                 + +          +    +     T +            T+
Sbjct: 92  KLMGWNTSNDFSSIEAIYNKLDTTRKQKVYRYAEHQLEEQKRNTSDNKVIAFMPTKTTTI 151

Query: 119 GVPEIRSPHNGIY-------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
            +    S   G Y             A    D   +    SM P ++ G+I+ +   + +
Sbjct: 152 ELSGSLSAGGGAYNDKSRIESVEVGSAPSQYDLAFRVCGDSMYPTFQDGEIVFVKETMDI 211

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--------YPVDTVE-MSDIEWIA 216
             G         G    K +    G  + L+SLN          Y     + + D+  I 
Sbjct: 212 YNGQIG-AIEINGLAFIKKMY-LEGTRLRLVSLNAELDEDGNRLYSDFYADELDDLYVIG 269

Query: 217 RIL 219
           R++
Sbjct: 270 RVI 272


>gi|299770880|ref|YP_003732906.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Acinetobacter sp. DR1]
 gi|298700968|gb|ADI91533.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Acinetobacter sp. DR1]
          Length = 223

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 59/225 (26%), Gaps = 20/225 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +     +   T + +A    +   ++   +        +      I + L      
Sbjct: 3   LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKN---LKSAFLPLIAQFLGVDGYW 59

Query: 69  ICQLLDLPFSDGRTTEKKE----------KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +                              I ++    S   G      F   N    +
Sbjct: 60  LTTGNTEDAFRESDVFSPTVVSAESTDQYAWIEVVEASFSCGTGESIEFHFDAING--KI 117

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             P        +   Q      K +  SM    + GD++ ++ +        +      G
Sbjct: 118 PFPASFFKEKRV--AQDCMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAG 175

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
           + + K +      S+ L SLN  +    V      + + + R  W
Sbjct: 176 EGMIKQIFKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220


>gi|325661575|ref|ZP_08150199.1| LexA repressor [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331084865|ref|ZP_08333953.1| LexA repressor [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325472102|gb|EGC75316.1| LexA repressor [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330410959|gb|EGG90381.1| LexA repressor [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 205

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 60/221 (27%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I          P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQEEILEYIKSELLSKGYPPAVREICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+  T                 T ++   +P++    +G+            N  N   
Sbjct: 69  EIMDDT--------------FNLTRREVVNVPVIGRVAAGAPI------LAEENIENYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         +    +      +  SM+      GD +++        GD ++      
Sbjct: 109 IPME-------FMPNEKTFLLSVKGESMINAGILDGDYVLIKQQSNAENGDMVVAL-VED 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N       V    +E + +++
Sbjct: 161 GATVKRFFKEE-GVYRLQPENDFMDPIIV--ESVEILGKVI 198


>gi|293608631|ref|ZP_06690934.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829204|gb|EFF87566.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325121552|gb|ADY81075.1| hypothetical protein BDGL_000489 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 223

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 59/221 (26%), Gaps = 12/221 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +     +   T + +A    +   ++   +        +      I + L      
Sbjct: 3   LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKN---LKSAFLPLIAQFLGVDGYW 59

Query: 69  ----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPE 122
                 +           T    +      +       F           ++ +   +P 
Sbjct: 60  LTTGNTEDSFRESDVFSPTVVSAESTDQYVWIEVVEANFSCGTGESIEFHFDAINGKIPF 119

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             S        Q      K +  SM    + GD++ ++ +        +      G+ + 
Sbjct: 120 PASFFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMI 179

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
           K +      S+ L SLN  +    V      + + + R  W
Sbjct: 180 KQIFKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220


>gi|17546023|ref|NP_519425.1| LexA repressor [Ralstonia solanacearum GMI1000]
 gi|25453094|sp|Q8XZU1|LEXA_RALSO RecName: Full=LexA repressor
 gi|17428318|emb|CAD15006.1| probable lexa repressor . transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 216

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 23/216 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I +  +R    P  + +A + G    +                + E
Sbjct: 1   MATLTTRQQQIYDLIHQTIQRTGFPPTRAEIAAEFGFSSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              + LA                 R           L             G    G+   
Sbjct: 45  EHLRALARKGVIELTPGASRGIRLRAEGGASPHQFSLPSMGLMQLTLPLVGRVAAGSPIL 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +        D   K +  SM       GD+L +  A +   G  ++ + 
Sbjct: 105 AAEHIDRQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDGDLLAVQRAAEAANGKIVVAR- 163

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K    + GR ++L++ N  +    V++  
Sbjct: 164 LGDDVTVKRFQRK-GRQVELIAENPDFEPIHVDLDR 198


>gi|313903969|ref|ZP_07837349.1| transcriptional repressor, LexA family [Eubacterium cellulosolvens
           6]
 gi|313471118|gb|EFR66440.1| transcriptional repressor, LexA family [Eubacterium cellulosolvens
           6]
          Length = 224

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 58/221 (26%), Gaps = 19/221 (8%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              +I   + +        PS   +    GL  TS      +     G  R  +T+   +
Sbjct: 10  KQLEILNYLKKEILLRGFPPSVREICEAVGLKSTSSVHAHLESLEKNGYIRKDATK--PR 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +   ++   +  +              +       P          +       +   V
Sbjct: 68  AIEILDDDFRE--ERFRRITPDPSIDTSKPSEFQQVPVIGNVAAGQPLLAVEAVESYFPV 125

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P  + P+        Q    + +  SM+      GD++++        G+ ++       
Sbjct: 126 PVSKLPN-------AQTFMLRVRGESMINAGILDGDLVLVKQQETAANGEMVVALID-DS 177

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              K     +   I L   N       V      + +  ++
Sbjct: 178 ATVKTFYREKD-HIRLQPENDHMDPIIVTPDQNFKILGLVI 217


>gi|302526394|ref|ZP_07278736.1| LexA repressor [Streptomyces sp. AA4]
 gi|302435289|gb|EFL07105.1| LexA repressor [Streptomyces sp. AA4]
          Length = 217

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 63/220 (28%), Gaps = 34/220 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFK 60
            + I   I     RH  +PS   +    GL   +S +K      +     R PS      
Sbjct: 20  QQHILATIRDWVGRHGYSPSTREIGEAVGLRSTSSVSKHLAALEDKGFLRRSPSVSRPID 79

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + A   +                    +E       P        + +    +  + + +
Sbjct: 80  VRAFLGD-----------------LPSRESRDSVPVPVVGDIAAGTPISAQEHVDDVMQL 122

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P   +        +      + +  SM+      GDI+++    + + G  +       +
Sbjct: 123 PRGLTG-------RGTVFGLRVRGDSMVDAAICDGDIVVVKQQSEAHSGQIVAAMID-EE 174

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K +  RR   + L   N  Y    ++      +  ++
Sbjct: 175 ATVK-VYRRRDGHVYLEPRNPAYE--VIDGDRATVLGVVV 211


>gi|167758153|ref|ZP_02430280.1| hypothetical protein CLOSCI_00491 [Clostridium scindens ATCC 35704]
 gi|167664050|gb|EDS08180.1| hypothetical protein CLOSCI_00491 [Clostridium scindens ATCC 35704]
          Length = 226

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 59/221 (26%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I          P+   +     L  TS   +  +     G   R P+     
Sbjct: 30  KQQEILEYIKSQILERGFPPAVRDICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 89

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL  +     + +                       P          +    N  N   
Sbjct: 90  EILDESFNFTRREMVN--------------------VPMVGRVAAGEPLLAEQNVENYFP 129

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         +    Q    + +  SM+ +    GD++++        G+ ++      
Sbjct: 130 IPME-------FMPNNQTFMLRVKGDSMINIGIFDGDLVLVEQRQTARNGEVIVAL-VED 181

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N       V+  +++ + +++
Sbjct: 182 GATVKRFFKEE-GVFRLQPENDALDPIIVK--EVQILGKVI 219


>gi|7328297|emb|CAB82463.1| SOS regulatory LexA protein, putative [Staphylococcus aureus subsp.
           aureus COL]
          Length = 190

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 57/213 (26%), Gaps = 30/213 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +    +I+  I ++ +     PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +   ++     +++  +       K      +                   N 
Sbjct: 61  TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +PE  +  +      +          SM       GD +I+ S      GD ++ 
Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
                +   K     +     L   N       
Sbjct: 159 MTEEDEATVKRFYKEKN-CYRLQPENSTMEPIY 190


>gi|282909328|ref|ZP_06317144.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958772|ref|ZP_06376218.1| putative prophage L54a, repressor protein [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|282326896|gb|EFB57193.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283789812|gb|EFC28634.1| putative prophage L54a, repressor protein [Staphylococcus aureus
           subsp. aureus A017934/97]
          Length = 239

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 68/236 (28%), Gaps = 32/236 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I     + NLT   L  K      + +  +        R P  + +F+I    N +
Sbjct: 10  IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGY-----RTPKQDDLFEIAHILNIS 64

Query: 69  ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGG---------------FFDSG 107
           I  L     +               ++  +L +                           
Sbjct: 65  IDDLFPTRNNKKNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 124

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              TG         +I          +T    D        SM P+ ++G    +     
Sbjct: 125 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 184

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   L+    G  + K +       I+L+SLN  Y    V   SDI+ + +++
Sbjct: 185 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSDIKVMGKVV 238


>gi|255318670|ref|ZP_05359900.1| Peptidase S24-like domain protein [Acinetobacter radioresistens
           SK82]
 gi|262379502|ref|ZP_06072658.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255304271|gb|EET83458.1| Peptidase S24-like domain protein [Acinetobacter radioresistens
           SK82]
 gi|262298959|gb|EEY86872.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 232

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 68/222 (30%), Gaps = 15/222 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S     +  AID   +    +  +       L+P+  ++  +       R          
Sbjct: 5   SLRRANLRRAIDAKNKSEGFSSDAAFCEHYDLNPSHISQLVKGHGSFGERAARNLEKKVG 64

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             +         ++   +      + +            G F +            + +P
Sbjct: 65  WESGLLDQEPTKNIFGEESFANVPRVRARMAPVLSWVQVGSFTNVAAVDMSEVSQWLPLP 124

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI---QVNCGDRLLIKPRTG 178
           E            +     + Q  S  P + +GD +++N       +  GD ++++ R  
Sbjct: 125 ED---------ECSNCFFLQVQGISNFPDFIEGDYIVVNPDAYYGDMQSGDIIVVR-RGE 174

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           D   K L+        L +LN  +  + +E   +  ++ +++
Sbjct: 175 DATFKKLVIETNGKRYLQALNPDFKPNIIEFDEECHFVGQVV 216


>gi|225871921|ref|YP_002753375.1| LexA repressor [Acidobacterium capsulatum ATCC 51196]
 gi|225792719|gb|ACO32809.1| LexA repressor [Acidobacterium capsulatum ATCC 51196]
          Length = 198

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 57/222 (25%), Gaps = 33/222 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT    K++ + I    +R+  +PS   +AR  GL+  S     +               
Sbjct: 1   MTKR-QKEVLDFITGFVQRNGYSPSFEEIAR--GLNLKSLATVHKHITN----------- 46

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L                D      + + +  L      + G          +     
Sbjct: 47  ---LQNKGLLARAHNRSRSLDVLPPRSRGRSVDRLPLMGRIAAGRPVEAAENAESI---- 99

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRT 177
                     G      +    +    SM       GD +++        G+ ++   R 
Sbjct: 100 --------SLGDIIGNREVFALQVHGESMRDEHIVDGDYVLVERTNTARQGEIIVALVRG 151

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K      G  + L   N       V  + +    R+L
Sbjct: 152 AETTLKRFY-LEGSMVRLQPSNAEMNPIIVPAAQVAIQGRVL 192


>gi|167855686|ref|ZP_02478443.1| LexA repressor [Haemophilus parasuis 29755]
 gi|167853204|gb|EDS24461.1| LexA repressor [Haemophilus parasuis 29755]
          Length = 209

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 35/218 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I+E +    E   + P+   +AR+ G                     + E +  +  
Sbjct: 10  QQEIFEFVKNHIESTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                        + +  +   +   I +     +   G    G    G     +   E 
Sbjct: 55  K-----------GYIEMLSGTSRGIRILVEDEAANDEEGLPLIGKVAAGTPIEAIEHIEK 103

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG       D   K    SM  +    GD+L ++    V  G  ++ +    ++  
Sbjct: 104 HYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVD-DEVTV 162

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       ++      +IE IA
Sbjct: 163 KRLEKK-GDLIYLHPENDELEPIIIDPRQSYIEIEGIA 199


>gi|323516288|gb|ADX90669.1| S24 family peptidase [Acinetobacter baumannii TCDC-AB0715]
          Length = 229

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 74/225 (32%), Gaps = 18/225 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +  + ++++ T +GL++K+G+   +  + +        + P   ++ K+ +     
Sbjct: 3   LQKNVKYLLKKYSTTTTGLSKKSGVPQPTLFRWENGQY----KEPKISTVEKLASWAGYD 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG------FFDSGVFPTGNKWNTVGV-- 120
              LL+              E+ L       +                 G+  +   V  
Sbjct: 59  ANTLLNNDLEAIDNINNDLDELVLDNNVNLSNKIKLDGEQIPVISWVAAGSFTDVQTVLK 118

Query: 121 -PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKP 175
             E+      +              TSMLP +  GD + +N    V         ++   
Sbjct: 119 DTEVLEWLPPMKKAGKNGYGLIVTGTSMLPKFEPGDRIYVNPDYPVFDLKTNDLVIVSCA 178

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
                  K LI   G    L  LN  +P   +++  + + + +++
Sbjct: 179 GDTQATFKRLIIEDGEEKYLEPLNTKWPEQIIKLTEECKLVGKVV 223


>gi|120602458|ref|YP_966858.1| phage repressor [Desulfovibrio vulgaris DP4]
 gi|120562687|gb|ABM28431.1| putative phage repressor [Desulfovibrio vulgaris DP4]
 gi|311233917|gb|ADP86771.1| putative phage repressor [Desulfovibrio vulgaris RCH1]
          Length = 216

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 13/192 (6%)

Query: 32  GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
           G++ ++  ++K      +        I ++  A +     L        +          
Sbjct: 29  GVNRSAVTQAKNRDAIPQK------WILQLARAYHLAPDWLEFGKGRQHQPPTSLHDPET 82

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
           +L              +  +G     +          G                SM P  
Sbjct: 83  VLVPRVKAVLSAGGGSLDVSGGVVENLPFRYDWLARRGH---PAHMVLMNVTGDSMEPGI 139

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           R GD L+++ +        +        I+ K        +I L+S N  Y    +   +
Sbjct: 140 RHGDTLLIDQSHVTAQTGGVYAFGYEDSILVKRFGRD-ADAILLLSDNTAYAPIRIRGDE 198

Query: 212 ---IEWIARILW 220
              +  I +I+W
Sbjct: 199 ADLLHVIGKIVW 210


>gi|262163862|ref|ZP_06031602.1| transcriptional regulator [Vibrio mimicus VM223]
 gi|262027842|gb|EEY46507.1| transcriptional regulator [Vibrio mimicus VM223]
          Length = 220

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 40/208 (19%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA K G+   +    K  G            + K ++ T +T  +L +          
Sbjct: 36  SELAEKLGISTKTIYTWKERGKIPE----KILLLAKKISNTEKTKIELAETRMVILT--- 88

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSPHNGIYAI-----QTQDT 138
                              +       GN     + +P   S              +   
Sbjct: 89  -------------------YYDIEASAGNGTLVQMEMPTEISFSQDYLMKELHVKPSDVF 129

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
             +    SM P  + G ++I+   +    GD + +      ++ K L  +    I   S 
Sbjct: 130 MMRVSGDSMYPTLQDGALIIV-KNMSDFYGDGVYVFRINEQVMVKRLQFQP-TKIIFKSD 187

Query: 199 N-CCYPVDTVEMSDIE-----WIARILW 220
           N   Y    V   ++E      + R++W
Sbjct: 188 NIHLYEPWEVLHKELEGIDFKILGRVIW 215


>gi|317055026|ref|YP_004103493.1| transcriptional repressor, LexA family [Ruminococcus albus 7]
 gi|315447295|gb|ADU20859.1| transcriptional repressor, LexA family [Ruminococcus albus 7]
          Length = 194

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 44/183 (24%), Gaps = 6/183 (3%)

Query: 38  FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           F   K    EG    P+   I       + +         +     EK + +   +    
Sbjct: 11  FEFIKERVEEGYP--PTVREICSHFGFKSTSTAHRYIKTLTSKGFLEKSDNQNRAIKLVG 68

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
            G       G    G     +                      K +  SM+      GD 
Sbjct: 69  GGGMLIPLVGTVTAGTPITAIEYVSEYISFQPARHYGNPLFALKVRGESMINAAILDGDT 128

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +++        G  ++      D   K           L   N       ++   +E + 
Sbjct: 129 VVVEQTPFAENGQIVVALVEGSDATVKTFYKEE-GHFRLQPENDTMDPIILDN--VEILG 185

Query: 217 RIL 219
           R++
Sbjct: 186 RVV 188


>gi|219870292|ref|YP_002474667.1| LexA repressor [Haemophilus parasuis SH0165]
 gi|254809099|sp|B8F317|LEXA_HAEPS RecName: Full=LexA repressor
 gi|219690496|gb|ACL31719.1| LexA repressor/SOS-response transcriptional repressors
           (RecA-mediated autopeptidases) [Haemophilus parasuis
           SH0165]
          Length = 209

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 66/218 (30%), Gaps = 35/218 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I+E +    E   + P+   +AR+ G                     + E +  +  
Sbjct: 10  QQEIFEFVKNHIESTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                        + +  +   +   I +     +   G    G    G     +   E 
Sbjct: 55  K-----------GYIEMLSGTSRGIRILVEDEAANDEEGLPLIGKVAAGTPIEAIEHIEK 103

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG       D   K    SM  +    GD+L ++    V  G  ++ +    ++  
Sbjct: 104 HYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVD-DEVTV 162

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       V+      +IE IA
Sbjct: 163 KRLEKK-GDLIYLHPENDELEPIVVDPRQSYIEIEGIA 199


>gi|312621143|ref|YP_004022756.1| lexa repressor [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201610|gb|ADQ44937.1| LexA repressor [Caldicellulosiruptor kronotskyensis 2002]
          Length = 819

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           I +   +    K +  SM     + GDI I+         D ++     G+I  K     
Sbjct: 724 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVI-AWLDGEITVKRFCKM 782

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G ++ L+  N  Y    ++  ++  + +++
Sbjct: 783 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 812


>gi|114321148|ref|YP_742831.1| putative phage repressor [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227542|gb|ABI57341.1| putative phage repressor [Alkalilimnicola ehrlichii MLHE-1]
          Length = 247

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 13/203 (6%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86
            A+K G+  +   K     + G  +      I +        +          G T   +
Sbjct: 44  FAQKCGMSDSLIRKYLEGSMPGLEK---LIMIARAADIRVGWLATGELPVRDCGETAGLR 100

Query: 87  EKEIPLLYFPPSGSGGFFDSGV------FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
                   +    +   +           P   +     +   R    G           
Sbjct: 101 VASSLQTRYAGEFALIPWYDAQSHPSADQPAEQRMLER-LAFRRDWLLGEGLAPDGLVLV 159

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
                SM+P    GD+L++++  Q    D + +      +VAK L       + + S N 
Sbjct: 160 GAGGDSMVPTVADGDLLLVDTREQEPAEDAIYVLRLEHHVVAKRLQVDWKGGLWVRSDNP 219

Query: 201 CYPVDTV---EMSDIEWIARILW 220
            Y    +   + +++  + R++W
Sbjct: 220 QYADQHISTEDAAELNIVGRVVW 242


>gi|299483505|gb|ADJ19586.1| putative transcriptional repressor protein [Treponema primitia
           ZAS-2]
          Length = 242

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 72/221 (32%), Gaps = 23/221 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S +   E  + + +   LT  G A   GL      +     ++     PS E++ K+  
Sbjct: 34  LSMENERERFNFIQKTTGLTKKGFAESLGLSKALGYQISTGMLK-----PSRETLEKLSF 88

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             N  +   L          E ++  I LL    +   G           +  T+ +P  
Sbjct: 89  IYNVNLNWFLLGEG---SPFETEKATIKLLRQEAAAGQGREIEDY----AEEETLKLPRS 141

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                                 SM+      GD +I +  +    G+ + +      ++ 
Sbjct: 142 LISPYR----PENLQAVYVAGDSMIGEHIYNGDAVIFHPGLT--EGNGIYVLSLDTSLLV 195

Query: 183 KVLISRR-GRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
           K +      RS+ L+S N  YP   +  +++E      R++
Sbjct: 196 KRVSFDELPRSVFLISANPAYPPRQISGAELENLRIQGRVV 236


>gi|148547009|ref|YP_001267111.1| putative prophage repressor [Pseudomonas putida F1]
 gi|148511067|gb|ABQ77927.1| putative prophage repressor [Pseudomonas putida F1]
          Length = 217

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 14/200 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + R    HNL+   LA + G+         R       R P+ E+I + L        
Sbjct: 6   AFLKRYKREHNLSQLQLAERLGMTQGGVGHWLRGT-----RRPTLETINEKLEKLGLVFL 60

Query: 71  QLLDL-PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
           +   +    D     +            +     F   V           +PE  + H  
Sbjct: 61  EAQVMVVERDIVREAQGLYTAEQPVSAEALLYASFRFPVLS--WADLQGPLPETSTSHEQ 118

Query: 130 I-YAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
             Y           ++ SM         +G  +++++ ++   G  ++ +      V + 
Sbjct: 119 TDYMPAGNAFWLVVENDSMNAASGKSVPEGMRVLVDTGLEAQPGRLVIARQPGRPAVLRQ 178

Query: 185 LISRRGRSIDLMSLNCCYPV 204
           L+   G    L  LN  YP 
Sbjct: 179 LVEEGGDK-MLRPLNTRYPT 197


>gi|312794624|ref|YP_004027547.1| lexa repressor [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181764|gb|ADQ41934.1| LexA repressor [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 819

 Score = 82.1 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           I +   +    K +  SM     + GDI I+         D ++     G+I  K     
Sbjct: 724 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVIAWLD-GEITVKRFCKM 782

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G ++ L+  N  Y    ++  ++  + +++
Sbjct: 783 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 812


>gi|160899002|ref|YP_001564584.1| LexA repressor [Delftia acidovorans SPH-1]
 gi|229621210|sp|A9BWH9|LEXA_DELAS RecName: Full=LexA repressor
 gi|160364586|gb|ABX36199.1| transcriptional repressor, LexA family [Delftia acidovorans SPH-1]
          Length = 224

 Score = 82.1 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +   ++I + I     R    P  + +A   G              E   +  + + 
Sbjct: 5   PKLTARQQQILDLIQAAISRTGAPPTRAEIANTLGFKSA-------NAAEEHLQALARKG 57

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + ++++ T+  I    D   +              L             G    G+    
Sbjct: 58  VIELVSGTSRGIRLRTDTVRNINAARGTSFG----LPLSALAPLMLPLVGRVAAGSPILA 113

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               +              D   + +  SM       GD+L + SA +   G  ++ +  
Sbjct: 114 QEHIDQTYSVEPSLFQTRPDYLLRVRGMSMRDAGIMDGDLLAVQSAHEARNGQIVVAR-L 172

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
             ++  K L     + ++L+  N  YPV  V   +   I
Sbjct: 173 GDEVTVKRLRRTT-QGVELLPENPDYPVIRVAPEEAFAI 210


>gi|24372232|ref|NP_716274.1| prophage MuSo1, Cro/CI family transcriptional regulator [Shewanella
           oneidensis MR-1]
 gi|24346153|gb|AAN53719.1|AE015511_2 prophage MuSo1, transcriptional regulator, Cro/CI family
           [Shewanella oneidensis MR-1]
          Length = 240

 Score = 82.1 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 18/226 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   E +  +      +    A           K            PS + + +I    N
Sbjct: 17  ESFGERLKELMGDE--SLRAFANAIDTSEGGVRKWFTQST-----MPSFDKMVRIARRYN 69

Query: 67  ETICQLLDLPFSDGRTTEK--KEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPE 122
             +  L               +        F    +          TG+   W+   V  
Sbjct: 70  VNLEWLCTGEGPKFPGETAAYESVICKTEEFSEEYALIDGYHTQVSTGHGAQWDNERVRR 129

Query: 123 IRSPHNGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             +  +                  +  SM P    GD ++++          + +     
Sbjct: 130 KLAFRSKWLRYRGLQPENLRVVFAKGDSMEPTIHSGDSILVDITDANLSDGSIFVLRIGD 189

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
           D+ AK +      SI ++S N  Y    V +++   +  + +++W 
Sbjct: 190 DLFAKRVQVHIDGSITIISDNKEYREQRVPVAELGLLSVVGKVVWI 235


>gi|222528077|ref|YP_002571959.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725]
 gi|222454924|gb|ACM59186.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725]
          Length = 819

 Score = 82.1 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           I +   +    K +  SM     + GDI I+         D ++     G+I  K     
Sbjct: 724 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVIAWLD-GEITVKRFCKM 782

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G ++ L+  N  Y    ++  ++  + +++
Sbjct: 783 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 812


>gi|262040942|ref|ZP_06014166.1| transcriptional activator-regulatory protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041714|gb|EEW42761.1| transcriptional activator-regulatory protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 240

 Score = 82.1 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 62/218 (28%), Gaps = 16/218 (7%)

Query: 12  AIDRMAERHNL----TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +    ++  L      + +A++  L P + +K            P   ++  + +    
Sbjct: 18  RLALACDKAGLMPHGRQAEIAKRMKLTPKAVSKWFNGESI-----PRRGTLQALASHIGT 72

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125
           +   LL     DG           +              GV          +V      +
Sbjct: 73  SASYLLGDADEDGIEPGSATNRKDVFRVDLLDIAVSAGPGVVNQEFVEILRSVEYEPAEA 132

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            H               +  SM      GD+L ++ +++   GD +           K L
Sbjct: 133 RHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDISVKSFDGDGIYAFLYDDTAHVKRL 192

Query: 186 ISRRGRSIDLMSLNCCYPVDT-VEMSD---IEWIARIL 219
              +   + ++S N  Y     +E  +   +    +++
Sbjct: 193 QKMKD-KLLVISDNKSYAAWDPIEKDEMNRVFVFGKVI 229


>gi|311747894|ref|ZP_07721679.1| transcriptional regulator [Algoriphagus sp. PR1]
 gi|126575888|gb|EAZ80198.1| transcriptional regulator [Algoriphagus sp. PR1]
          Length = 231

 Score = 82.1 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 65/229 (28%), Gaps = 32/229 (13%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN----- 66
            I  + ++ NLT   +A   G+  +     +          P  +++ K+  A       
Sbjct: 6   NIKFLRKQKNLTQEIMASTIGISRSKLAGYESSVN------PPLDTLVKLSDALGVSLDI 59

Query: 67  ------ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                  +  +       +     +  K   L            +         +     
Sbjct: 60  LLREDLTSYSEYKLRELLETDQFLRGRKLRILATTVDEQGRELIEVVSQRAKASYLAGFA 119

Query: 121 PEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLL 172
                     +A+       +    +    SMLP    G  ++   ++  + V  G+R +
Sbjct: 120 DPEYISELPRFALPFLPTDKKHRVFQVDGDSMLP-IPDGAWIVCEYVDDWLAVKDGERYV 178

Query: 173 IKPRTGDIVAK----VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           I      +  K     +     + + L S N  YP   VE+  +  I R
Sbjct: 179 IVTEQDGVTFKLAYNRIQ--SDQKLLLCSANPIYPPFEVEIDQVREIWR 225


>gi|187939670|gb|ACD38813.1| predicted transcriptional regulator protein [Pseudomonas
           aeruginosa]
 gi|187939749|gb|ACD38890.1| hypothetical protein PACL_0632 [Pseudomonas aeruginosa]
          Length = 271

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 55/262 (20%), Gaps = 56/262 (21%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-----------------------IEGRN 50
               +  +LT   LA   G+     ++ ++                           GR 
Sbjct: 2   KLARKHADLTQRQLAEAVGVSQPVISQLEKGENLQSVHLLKIANVCGVDPEWLAEGTGRP 61

Query: 51  -----RWPSTESIF--------------KILAATNETICQLL-DLPFSDGRTTEKKEKEI 90
                R PS E                 K     +    + + +   SD    E      
Sbjct: 62  PGFSAREPSAEYQAASSTADIVRSMLASKAAQKLSAEARERILNAAESDAGPAESNVIHA 121

Query: 91  PLLYFPPSGSG---GFFDSGVFPTGNKW---NTVGVPEIR-------SPHNGIYAIQTQD 137
                                   G                            Y      
Sbjct: 122 DFSRTTLVKGNTISIAQYDVRAAMGGGQVPAEYREFVRNLVVDKVQLDDLGLKYTDPANL 181

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
                   SML        ++++  I     + + +      +  K +         L+S
Sbjct: 182 KIITGWGQSMLGTIEDKSPILVDVGITDFVEEGVYVFTWLQHLFVKRVQIHDAEHYLLVS 241

Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
            N  +      M D+ + A++L
Sbjct: 242 DNKSFEPQKARMEDVHFQAKVL 263


>gi|209543675|ref|YP_002275904.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531352|gb|ACI51289.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5]
          Length = 212

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 62/213 (29%), Gaps = 31/213 (14%)

Query: 28  ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKE 87
           A  +G+   S N           R     + F+I  A   ++  L+    S         
Sbjct: 9   AAASGVPLGSLNNYLAG------REMKASTAFRIARACGVSLEWLVTGADSGTGPVPDAA 62

Query: 88  KEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNG----IYAIQTQDTRH 140
           +    L  P               G+     +   V  I    +     ++A + +    
Sbjct: 63  QFDEYLVVPR-------YDDELAAGSGSVATDQAPVEAIGVGRSLLPQSVWAARDRLVAL 115

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
             +  SM P    GD++ ++ A +      + +      ++ K L  R    + + S N 
Sbjct: 116 TVRGDSMEPTLSNGDLVFVDRARERLVSGAIYVIRAGEQLLVKRLEQRIDGDLVVTSDNK 175

Query: 201 CYPVDTVEMSDIE-----------WIARILWAS 222
            Y    V                  + RI+W S
Sbjct: 176 RYSEQVVSAEQARQLWNGGNAPATIVGRIVWRS 208


>gi|259046516|ref|ZP_05736917.1| transcriptional repressor LexA [Granulicatella adiacens ATCC 49175]
 gi|259036681|gb|EEW37936.1| transcriptional repressor LexA [Granulicatella adiacens ATCC 49175]
          Length = 207

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 56/230 (24%), Gaps = 42/230 (18%)

Query: 1   MTSFS---HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN 50
           MT+        + + I +  + H   P+   +     L  TS      ++ ++ G     
Sbjct: 1   MTNLKDSRQLDVLQFIYKEVQEHGYPPTVREICNAVQLSSTSTVHGHLSRLEKNGFI--Q 58

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R PS     ++                    T    +         P          +  
Sbjct: 59  RDPSKPRAIEL--------------------TMAGLKAIGAKATAIPMLGVVTAGEPILA 98

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
                +   +P      +            + +  SM+      GD +I+        G+
Sbjct: 99  VEEASDFFPIPPELQNESD------DLFMLRIKGDSMINAGIFDGDSVIVRKQSTAANGE 152

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++          K         + L   N       +       + +++
Sbjct: 153 IVIAMTEEDTATCKRFY-LEKDHVRLEPENDTMEPIILPN--CTILGKVV 199


>gi|187776409|ref|ZP_02802465.2| putative repressor protein [Escherichia coli O157:H7 str. EC4196]
 gi|188025234|ref|ZP_02776939.2| putative repressor protein [Escherichia coli O157:H7 str. EC4113]
 gi|189010761|ref|ZP_02809209.2| putative repressor protein [Escherichia coli O157:H7 str. EC4076]
 gi|189402468|ref|ZP_02782667.2| putative repressor protein [Escherichia coli O157:H7 str. EC4401]
 gi|189403410|ref|ZP_02795288.2| putative repressor protein [Escherichia coli O157:H7 str. EC4486]
 gi|189404368|ref|ZP_02788860.2| putative repressor protein [Escherichia coli O157:H7 str. EC4501]
 gi|189406229|ref|ZP_02827125.2| putative repressor protein [Escherichia coli O157:H7 str. EC508]
 gi|208810492|ref|ZP_03252368.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206]
 gi|208816709|ref|ZP_03257829.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045]
 gi|208819596|ref|ZP_03259916.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042]
 gi|209400359|ref|YP_002271137.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115]
 gi|217329536|ref|ZP_03445615.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588]
 gi|187767281|gb|EDU31125.1| putative repressor protein [Escherichia coli O157:H7 str. EC4196]
 gi|188014100|gb|EDU52222.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113]
 gi|188998604|gb|EDU67590.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076]
 gi|189355391|gb|EDU73810.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401]
 gi|189360762|gb|EDU79181.1| putative repressor protein [Escherichia coli O157:H7 str. EC4486]
 gi|189366046|gb|EDU84462.1| putative repressor protein [Escherichia coli O157:H7 str. EC4501]
 gi|189375816|gb|EDU94232.1| putative repressor protein [Escherichia coli O157:H7 str. EC508]
 gi|208725008|gb|EDZ74715.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206]
 gi|208731052|gb|EDZ79741.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045]
 gi|208739719|gb|EDZ87401.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042]
 gi|209161759|gb|ACI39192.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115]
 gi|217317304|gb|EEC25733.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588]
          Length = 219

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 64/215 (29%), Gaps = 15/215 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + +   + R+ +   LT   L + +G+   +    ++   E     P ++++ K
Sbjct: 1   MQEKMMESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   T   LL    S   +  +      + Y     +  F       T    + +  
Sbjct: 56  LAQALGTTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITT 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----P 175
                  +   ++          + S  P    G  +IL        G  + +       
Sbjct: 116 FFDVEEGDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLK 171

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
               +  K L+   G+ + L  LN  Y    +   
Sbjct: 172 NEPSMTIKKLV-IDGKLVYLSPLNPRYQSSLLTPE 205


>gi|237746102|ref|ZP_04576582.1| phage repressor [Oxalobacter formigenes HOxBLS]
 gi|229377453|gb|EEO27544.1| phage repressor [Oxalobacter formigenes HOxBLS]
          Length = 227

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 22/224 (9%)

Query: 6   HKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           H+++    +       ++  S LAR   + P + +  +        R  S + + K    
Sbjct: 2   HEQMKRLYEAARMLKRVSGQSELARLFNVSPQTIHNWQ-------VRGISKQGMLKAQEM 54

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              +   L                   +  F    +     +          +  +    
Sbjct: 55  VGCSALWLETGAG-----PMSLGNFQSVSTFWGDVNQIPLITAEQAARVNCASRNLSIYH 109

Query: 125 SPHNGIY---AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
            P   ++    +       +    +M+P + KGD +I++ AI    GD ++ K      V
Sbjct: 110 KPLKWLFTHAPLSAHSFALEITGLAMMPEFEKGDWVIVDPAIAPEPGDFVVAKYGDKMNV 169

Query: 182 AKVLISRRG------RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  +G         +L++LN  YP     +  +E I  ++
Sbjct: 170 ILRKYRPKGLDLSHTMLFELIALNDDYPRIRSHLDAVEIIGTMV 213


>gi|330958867|gb|EGH59127.1| repressor protein c2 [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 220

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 25/216 (11%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           ++ + LAR  G+   S N      + G+ +    +++             L        +
Sbjct: 7   VSQAALARACGVTAPSVNDW----VSGKTKTIEGQNLLLAADFLQVAPLWLATGKGRMRK 62

Query: 82  TTEKKEKEIP-------LLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRSPHNGI-- 130
           T    E           +           +          W  V    P   S       
Sbjct: 63  TDTADEDSSQFSGEQSNVEMAEQPTRMYRYPVVSEVAAGAWAEVVEPYPNGYSDRYEATD 122

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
           Y  +      +    SM         +G ++++++ ++   G  ++   P + D+  K L
Sbjct: 123 YKAKGPAFWLEVVGDSMTAPSGTSVPEGMLILVDTGVEARPGKLVVAKLPSSNDVTFKKL 182

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218
           I      + L  LN  Y +      D + I    R+
Sbjct: 183 I-DDAGQLYLKPLNPGYSMIKCT-DDCKIIGVAVRV 216


>gi|332799283|ref|YP_004460782.1| SOS-response transcriptional repressor, LexA [Tepidanaerobacter sp.
           Re1]
 gi|332697018|gb|AEE91475.1| SOS-response transcriptional repressor, LexA [Tepidanaerobacter sp.
           Re1]
          Length = 202

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 56/224 (25%), Gaps = 40/224 (17%)

Query: 4   FSH--KKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWPSTE 56
            +H  K+I + I    +     PS   +     L  T + +       E     R P   
Sbjct: 5   LTHRQKQILDYIHNYFKTKGYPPSVREICVATNLKSTATVHSYLVQLEEKGYIKRDPQKP 64

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +I+                              +   P          +    N  N
Sbjct: 65  RAIEIMD---------------------TGIVIDKDVIQIPLVGKVTAGEPILAQENIEN 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
               P+   P                +  SM       GD +++ S      GD ++   
Sbjct: 104 VFAFPKEMLP-------DANIFMLAVKGDSMIEAGILNGDYVMVQSTNTAKNGDIVVAL- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   K         I L   N       V+  D++ + +++
Sbjct: 156 LEDEATIKRFYKETD-HIRLQPENRFMEPIIVK--DLKILGKVV 196


>gi|315930359|gb|EFV09439.1| peptidase S24-like family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 222

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 22/222 (9%)

Query: 1   MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     + I +  D +A     +L    +A++ G++P +FN  K               I
Sbjct: 14  MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGINPDTFNSMKFRNSIPYP------QI 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L   N +I           +   + + +I  LY   +  GG         G   + +
Sbjct: 66  LNFLNERNISINYFFYGVSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 116

Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E+      + +    +         SM PL + G I +++           +     
Sbjct: 117 DCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 176 DGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 216


>gi|110638280|ref|YP_678489.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110280961|gb|ABG59147.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 259

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 15/221 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E +    ++   T   LA++ G+  +     +    E      +   + ++   T + 
Sbjct: 4   ISENVKYFRKQLGFTQEQLAQRIGIKRSLLGAYEEGRAEPGLETLTI--LARLFETTVDA 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYF----PPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           +           +    K+ E   L                         +         
Sbjct: 62  LISETLSDPGKRKEAMSKDIEGKKLRVLAITVDKDDKENIQLVPEKAAAGYLNGYADPEY 121

Query: 125 SPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRT 177
                 + +            + +  SMLPL     I+   +++   V      ++   T
Sbjct: 122 VAELPQFYLPIFSGSGTYRAFEIKGDSMLPLASGSLIIGQYVDNWSSVKDQQTYILVTAT 181

Query: 178 GDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
             IV K +    ++  ++ L+S N  Y    + + ++  I 
Sbjct: 182 EGIVYKRIYNNIKKNETLKLVSDNPAYEPYDIHVENVIEIW 222


>gi|21231174|ref|NP_637091.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|25453091|sp|Q8P9X2|LEXA2_XANCP RecName: Full=LexA repressor 2
 gi|21112814|gb|AAM41015.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC
           33913]
          Length = 213

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    E   +  + + +AR  G       +               E++ +  
Sbjct: 6   TQQAILALIAERIETDGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                         E P+             +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGAAAHARAAPAEEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|114566341|ref|YP_753495.1| hypothetical protein Swol_0803 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337276|gb|ABI68124.1| hypothetical protein Swol_0803 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 255

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 64/250 (25%), Gaps = 42/250 (16%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-----------------------IE 47
           E +  +     L+   L++K G+  +     +R                           
Sbjct: 5   ERLQYLRLEKELSEIQLSKKVGISESVIRLYERGKLRIDLEHLHKLAAFFDVTPGLLLGT 64

Query: 48  GRNRWPSTESIF------KILAATNETICQLLDLP-----------FSDGRTTEKKEKEI 90
                P  E++       K+L   NE      D P            S+    +   ++ 
Sbjct: 65  AFPHLPPEEALESYRVVNKLLEIRNEERKDEEDSPLFIDTLAQLAAESNKSDNKASNRQA 124

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
            +     +       +              P   +         +     +     M P 
Sbjct: 125 TIRAGVVAVYHKIVSAHSEANQEFIEDY-WPVNTTVMQIYGHDISNYFYLRVHGDFMEPT 183

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            +   I++    +QV+  D  ++         K L       I L+  N  +P    E  
Sbjct: 184 IKNQSIVLAKRQVQVDNNDLAVVLYEQSPAAVKRLNRYED-KIILLCDNKAHPAQICEQE 242

Query: 211 DIEWIARILW 220
               + ++LW
Sbjct: 243 KCIILGKVLW 252


>gi|229591048|ref|YP_002873167.1| LexA repressor [Pseudomonas fluorescens SBW25]
 gi|229362914|emb|CAY49826.1| SOS regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 202

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 60/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT+ + ++  I   I     +    PS   +A   G    S  +                
Sbjct: 1   MTTLTPRRTAILTFIRDRIAQQGQPPSLAEIAEAFGFASRSVAR--------------KH 46

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +    A   E             +    +  ++P+L    +G          P G    
Sbjct: 47  VLALTEAGFIEVNPNQARGIRLLNQPARPEWLDVPVLGRVAAG---------LPIGA--- 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
              V          +A        + Q  SM       GD++ +  + +   G  ++ + 
Sbjct: 95  DAEVHSRLQLDPSTFAKTPD-YLLRVQGDSMIEDGILDGDLVGVRRSAEALNGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K      G S+ L+  N  Y    V    
Sbjct: 154 D-GEVTIKRFER-SGDSVRLLPRNPAYQPIVVGPDQ 187


>gi|6900347|emb|CAB71959.1| putative regulatory protein [Neisseria meningitidis]
          Length = 249

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 73/242 (30%), Gaps = 31/242 (12%)

Query: 4   FSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            S + I + ++R+      N  P+    K  +  + F++  + G       P+ + + KI
Sbjct: 10  LSKRTIMDFLERLKSLWPDNAKPADFYNKIDMSASGFSRVWKDGAI-----PTADYLIKI 64

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFP 110
              T   +  LL    S      +  +                                 
Sbjct: 65  QEVTGCDLNWLLTGQGSPYMNKGQAVEVRTHTDGTATDTLGNPINLDEFVFIPRYDVYAA 124

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAI 163
            G+ +       +       Y I+        + +    +  SM  +   GD +++N A 
Sbjct: 125 AGHGYPAEDDKPLFCMAFRRYWIENYVTRQLDKLSVIAVKGDSMEGVLNHGDNILVNHAE 184

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARIL 219
                D L +      +  K +       + + S N  Y    ++++D    +  I R+ 
Sbjct: 185 T-TPRDGLYVIRIDNHLFVKQIQKLP-GKLLVKSANPVYEPFEIDLTDDNQNVAIIGRVE 242

Query: 220 WA 221
           W 
Sbjct: 243 WY 244


>gi|320354556|ref|YP_004195895.1| putative phage repressor [Desulfobulbus propionicus DSM 2032]
 gi|320123058|gb|ADW18604.1| putative phage repressor [Desulfobulbus propionicus DSM 2032]
          Length = 248

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 38/231 (16%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           L+    +    +  ++  + +          P ++ +  I+   N     LL       R
Sbjct: 14  LSQKEFSDVCKVGISTLRRYESGVNP-----PDSDFLCAIVDNYNINPMWLLSGEGPMYR 68

Query: 82  TTEKKEKE----------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNGI 130
                                  +              P    ++ + +     S   G 
Sbjct: 69  ERNTDPHGASTNSTSAKIPQRPVYMDDSGQVVIPQWQNPDPEMFDYIPMAETQLSAGGGA 128

Query: 131 YAIQ---------------------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           + I                            +    SM P  ++ D ++++   +     
Sbjct: 129 FVISEEIEGYYAFRKSWLSRVASSTKNLVLMRVLGDSMSPTIQEDDTVMIDIGKRSIKEG 188

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARIL 219
            +        ++ K L  R G  I ++S N   Y     +M ++  I +I+
Sbjct: 189 MIYAIRFDSTVMIKRLAFRPGGRIMIISDNRHEYEPYEADMRELHIIGQII 239


>gi|71907568|ref|YP_285155.1| LexA repressor [Dechloromonas aromatica RCB]
 gi|123733237|sp|Q47EP6|LEXA_DECAR RecName: Full=LexA repressor
 gi|71847189|gb|AAZ46685.1| SOS-response transcriptional repressor, LexA [Dechloromonas
           aromatica RCB]
          Length = 201

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
           G    G    G+    V   + R   +        D   K +  SM+ +    GD+L ++
Sbjct: 72  GLPLIGSVAAGSPILAVENMQGRYALDASLFAPKADFLLKVRGLSMIDVGIFDGDLLAVH 131

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
              Q   G  ++ +    ++  K L    G  I L++ N  +    V+   ++
Sbjct: 132 KTNQARDGQIVVARLD-EEVTVKRLER-SGGQIRLIAENPDFEPIIVDPEAVD 182


>gi|291528881|emb|CBK94467.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale
           M104/1]
          Length = 204

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 47/216 (21%), Gaps = 27/216 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
             K+I E I          PS                            ST S+   L  
Sbjct: 9   KQKEILEFIKSEILNRGYPPS------------VRDICEGV-----HLKSTSSVHAHLET 51

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                    D   +           +           G         G     V   E  
Sbjct: 52  LERKGYIRRDPAKNRAIEIIDDSFGLQRREMVNVPLVG-----RVAAGEPILAVENIETY 106

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            P    Y    Q    K +  SM+      GD +++      + GD ++          K
Sbjct: 107 FPVPAEYMPNKQSFMLKVKGESMINAGIFDGDNILVEQQSDASNGDMVVALID-DSATVK 165

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                    I L   N       V   D E + ++ 
Sbjct: 166 TFYK-ENGHIRLQPENDTMDPIIVP--DCEILGKVF 198


>gi|237798801|ref|ZP_04587262.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021654|gb|EGI01711.1| repressor protein c2 [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 217

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 22/222 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I +AI        +    +A   G+  ++  +          +    E+++ + 
Sbjct: 1   MTRQERIAKAIAA----SGMRKGEIAAYCGVANSAVTQWISGES----KSLRPENLYALS 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121
            AT      L      +    +     I            +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEGPEKEEFDANVAMIDQPKMS----FRYPVISWVSAGSWEEAVQPYP 108

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IK 174
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++   
Sbjct: 109 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKL 168

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           P + +   K L+   G    L  LN  Y +      D   I 
Sbjct: 169 PASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA-DCRIIG 208


>gi|153820436|ref|ZP_01973103.1| repressor protein C2 [Vibrio cholerae NCTC 8457]
 gi|126509021|gb|EAZ71615.1| repressor protein C2 [Vibrio cholerae NCTC 8457]
          Length = 199

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 12/196 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    + + +T + LA +     ++          G NR PS E I  ++         L
Sbjct: 9   VKARMKDNGITQAVLAERLDKSQSAIAHWL-----GGNRKPSIEEIAAMMKIVGLDHVTL 63

Query: 73  LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                 +             +                             EI   +    
Sbjct: 64  NSDGLVEYPDEAWANISRPQIQPSYQKSFPVLSSVQAGMWSEAIEPYTAEEINEWYETTE 123

Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLI 186
               +    + +  SM       + +G ++++++      G  ++       +   K L+
Sbjct: 124 RTSERCFWLRVEGDSMTSGVGVSFPEGTLVLVDTERDHQNGSLVVAKLTDVNEATFKKLV 183

Query: 187 SRRGRSIDLMSLNCCY 202
              G+   L  LN  Y
Sbjct: 184 IDAGQKY-LKPLNPSY 198


>gi|46581090|ref|YP_011898.1| S24 family peptidase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450511|gb|AAS97158.1| peptidase, S24 family [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234768|gb|ADP87622.1| putative phage repressor [Desulfovibrio vulgaris RCH1]
          Length = 260

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 67/248 (27%), Gaps = 38/248 (15%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFG------------------------ 45
             ++R+         S LAR  G+ P S + +++ G                        
Sbjct: 9   AVLERLMVASGAKNDSDLARILGITPQSVSGARKRGEVPPVWIQSFAEKTGISSDWLFFG 68

Query: 46  --IEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
              E     P    + +        + +                K   +           
Sbjct: 69  RQPEAVAMEPVRVGMLRAGDPIARVVTKSESAQEEMTPPLAHAGKAHVIECDDCEIMMLP 128

Query: 104 FDSGVFPTGNK-WNTVGVPEIRSPHNGIYAI----QTQDTRHKTQDTSMLPLYRKGDILI 158
                   GN  + T    E R      + +     +     +    SM P    GD+++
Sbjct: 129 MVEARLSAGNGSFETGANIERRYAFRTDFLLRKGQPSHMVLMRVDGDSMEPNIMNGDVVL 188

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-----SDIE 213
           ++ + +     ++        +  K++       I L S N  YP   ++      + I 
Sbjct: 189 IDQSQRDPRAGKVYAVGVEDVVYLKMVN-AAPGKIVLSSYNAVYPPLEIDARGDLSNGIR 247

Query: 214 WIARILWA 221
            I R +W 
Sbjct: 248 IIGRAVWV 255


>gi|240144156|ref|ZP_04742757.1| repressor LexA [Roseburia intestinalis L1-82]
 gi|257203859|gb|EEV02144.1| repressor LexA [Roseburia intestinalis L1-82]
 gi|291536196|emb|CBL09308.1| SOS-response transcriptional repressor, LexA [Roseburia
           intestinalis M50/1]
 gi|291538941|emb|CBL12052.1| SOS-response transcriptional repressor, LexA [Roseburia
           intestinalis XB6B4]
          Length = 205

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 50/218 (22%), Gaps = 31/218 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I E I +        P+   +     L  TS                S  S  + L
Sbjct: 9   KQREILEYIKQEILNKGYPPAVREICEAVHLKSTS----------------SVHSHLETL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P          G    G     V   E
Sbjct: 53  EKNGYIRRDPTKPRAIEIIDDNFNLTRREVVNVP--------IIGQVAAGQPLLAVENIE 104

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    +    +    K +  SM+      GD +++        GD ++         
Sbjct: 105 NYFPIPTEFMPNAETFMLKVKGDSMINAGIFNGDKILVQKQSDAQNGDIVVALVD-DSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V  ++   + ++ 
Sbjct: 164 VKTFYK-EDGHFRLQPENDTMDPIIV--NECSILGKVF 198


>gi|238788598|ref|ZP_04632390.1| Prophage repressor protein [Yersinia frederiksenii ATCC 33641]
 gi|238723193|gb|EEQ14841.1| Prophage repressor protein [Yersinia frederiksenii ATCC 33641]
          Length = 240

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++   + +  +     +   ++   +A + G+  ++ N+             + 
Sbjct: 4   KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            +  K+L     +    L    +    +     +         S +  +        GN 
Sbjct: 62  AAFAKVLNEPISSFSPSLAKELAKMAESLSISTRSGLNDKPAGSVANSYPLISWISAGNW 121

Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167
           +  +    + +I                   +  SM       + +G I++++   +   
Sbjct: 122 YEAIEPYTLRDIEIWPESTKNAHDNAFWLSVKGDSMTSPSGISFPEGMIILVDPEKEPMP 181

Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++       +   K LI   G    L  LN  Y +  +  +  + +  ++
Sbjct: 182 GNFVVAKLTDDNEATFKKLIVDAGVKY-LKPLNPAYRLIELNGN-CKILGVVV 232


>gi|308198487|pdb|3K2Z|A Chain A, Crystal Structure Of A Lexa Protein From Thermotoga
           Maritima
 gi|308198488|pdb|3K2Z|B Chain B, Crystal Structure Of A Lexa Protein From Thermotoga
           Maritima
          Length = 196

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 54/217 (24%), Gaps = 36/217 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +K+   I+   E++   PS   +AR+  + P       R                    
Sbjct: 7   QRKVLLFIEEFIEKNGYPPSVREIARRFRITP-------RGA------------------ 41

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             +    +                    +    P                  + + +PE 
Sbjct: 42  LLHLIALEKKGYIERKNGKPRALRISKSIRNKIPLIGEIRAGEKREAIEYLEDYIEIPES 101

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                            K +  SM       GD++++        GD +         +A
Sbjct: 102 FLSSGY------DHFLLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVAAMVDGEVTLA 155

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K      G +++L   N            ++ + +++
Sbjct: 156 KFYQR--GDTVELRPANREMSSMFFRAEKVKILGKVV 190


>gi|219870788|ref|YP_002475163.1| putative prophage repressor CI, XRE family transcriptional
           regulator/SOS-response transcriptional repressors
           (RecA-mediated autopeptidases)/ LexA family
           repressor/S24 family protease [Haemophilus parasuis
           SH0165]
 gi|219690992|gb|ACL32215.1| putative prophage repressor CI, XRE family transcriptional
           regulator/SOS-response transcriptional repressors
           (RecA-mediated autopeptidases)/ LexA family
           repressor/S24 family protease [Haemophilus parasuis
           SH0165]
          Length = 175

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 23/176 (13%)

Query: 53  PSTESIFKILAATN------ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           P+   + +++  T            + D   +   T+ KK +  PL+    +G       
Sbjct: 2   PNVNEVAQMINLTGVNKVILNGDGTIEDFDPNITPTSVKKSRAYPLVSSIQAGMWTETYD 61

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                G  ++ +       P              +    SM P + +GD+++++   + +
Sbjct: 62  FRDSEG--YDYIDTEIDAGP---------DAFFLRVSGMSMEPKFSEGDLVLIDIRKRPH 110

Query: 167 CGDRLLIKPRTGDIVAKVLISR------RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            GD +      G+   K                +L+ LN  +P  +    DI  I 
Sbjct: 111 PGDFVAAVNGNGEATLKRYRELGELSPSGNPHFELVPLNQDFPTLSSMKQDIRIIG 166


>gi|94988646|ref|YP_596747.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
 gi|94542154|gb|ABF32203.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
          Length = 232

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 58/223 (26%), Gaps = 15/223 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  +     +T S L R   ++  + +  ++       +  +       + +     
Sbjct: 4   GHQLKTVRLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L  P++    + K++                    +      +       + +    
Sbjct: 64  NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            Y                 D        SM P Y  G+++++        G  +      
Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           G    K +       + L+SLN  Y         +   I +I+
Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224


>gi|46580084|ref|YP_010892.1| transcriptional regulator [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449500|gb|AAS96151.1| transcriptional regulator, putative [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 204

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 13/192 (6%)

Query: 32  GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
           G++ ++  ++K      +        I ++  A +     L        +          
Sbjct: 17  GVNRSAVTQAKNRDAIPQK------WILQLARAYHLAPDWLEFGKGRQHQPPTSLHDPET 70

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
           +L              +  +G     +          G                SM P  
Sbjct: 71  VLVPRVKAVLSAGGGSLDVSGGVVENLPFRYDWLARRGH---PAHMVLMNVTGDSMEPGI 127

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           R GD L+++ +        +        I+ K        +I L+S N  Y    +   +
Sbjct: 128 RHGDTLLIDQSHVTAQTGGVYAFGYEDSILVKRFGRD-ADAILLLSDNTAYAPIRIRGDE 186

Query: 212 ---IEWIARILW 220
              +  I +I+W
Sbjct: 187 ADLLHVIGKIVW 198


>gi|306827322|ref|ZP_07460609.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782]
 gi|304430469|gb|EFM33491.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782]
          Length = 232

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 58/223 (26%), Gaps = 15/223 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  +     +T S L R   ++  + +  ++       +  +       + +     
Sbjct: 4   GHQLKTVRLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L  P++    + K++                    +      +       + +    
Sbjct: 64  NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            Y                 D        SM P Y  G+I+++        G  +      
Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEIVLIKQNSFDYDG-AIYAVEWD 182

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           G    K +       + L+SLN  Y         +   I +I+
Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224


>gi|225028634|ref|ZP_03717826.1| hypothetical protein EUBHAL_02913 [Eubacterium hallii DSM 3353]
 gi|224954044|gb|EEG35253.1| hypothetical protein EUBHAL_02913 [Eubacterium hallii DSM 3353]
          Length = 221

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 53/222 (23%), Gaps = 36/222 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             K+I E I +    H   P+   +     L  TS   +  +     G   R PS     
Sbjct: 22  KQKEILEYIKQSILSHGYPPAVREICEAVHLKSTSSVHSHLETLEKNGYIRRDPSKPRAI 81

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                                            G    G     + 
Sbjct: 82  EIID---------------------------DNFNLTRRELVNVPIVGTVTAGEPILAIE 114

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             +   P    +    Q    K +  SM+      GD +++      +  D ++      
Sbjct: 115 NIQGYFPIMPEFVNNKQTFMLKVKGESMINAGIFDGDFILVEETPTASDNDIIVAL-LED 173

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            +  K         I L   N       V        + R++
Sbjct: 174 SVTVKRFFKEED-HIRLQPENDTMEPIIVPQDSPFSIVGRVI 214


>gi|77459374|ref|YP_348881.1| LexA repressor [Pseudomonas fluorescens Pf0-1]
 gi|77383377|gb|ABA74890.1| SOS regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 205

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT+ + ++  I   I      H   PS   ++   G    S  +                
Sbjct: 4   MTTLTPRRTAILTFIRERIAEHGQPPSLAEISEAFGFASRSVAR--------------KH 49

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +    A   E            G+    +  E+P+L    +G+         P G   +
Sbjct: 50  VLALTEAGFIEVNPHQARGIRLLGQPARPELLEVPVLGRVAAGA---------PIGADAD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                  R   +     +T D   + Q  SM       GD++ +    +   G  ++ + 
Sbjct: 101 LH----NRLMLDPALFSRTPDYMLRVQGDSMIEDGILDGDLVGVRRNPEALNGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K      G ++ L+  N  Y    V    
Sbjct: 157 D-GEVTIKRFERV-GDAVRLLPRNPAYQPIVVRADQ 190


>gi|291166068|gb|EFE28114.1| LexA repressor [Filifactor alocis ATCC 35896]
          Length = 213

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 24/207 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + I+ +    N+T   L+ + G       +  +       R P+  ++  I      
Sbjct: 6   NVGKTIENILCEKNMTNRELSYRIGDTEVIIGRYIKGT-----REPNATNLSNIADVLGV 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +   LL       R          ++                  G     V         
Sbjct: 61  STDYLLGYSQEAKRKGVSIPILGKVV-----------------AGIPIEAVEEILDYEEI 103

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
               A        K Q  SM P   +GDI+I+     V  G+  ++     D   K +I 
Sbjct: 104 TPELARTGTFFALKIQGESMEPKLFEGDIVIIRQQNNVENGEIAVVLVNRQDATVKQIIK 163

Query: 188 RRGRSIDLMSLNCC-YPVDTVEMSDIE 213
                I L   N   Y         IE
Sbjct: 164 HDNG-IFLNGFNPIVYTPQFYTDDQIE 189


>gi|302341551|ref|YP_003806080.1| phage repressor [Desulfarculus baarsii DSM 2075]
 gi|301638164|gb|ADK83486.1| putative phage repressor [Desulfarculus baarsii DSM 2075]
          Length = 252

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 62/238 (26%), Gaps = 29/238 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I      + ++  L+    A   G+   + ++ +R  +       S             
Sbjct: 13  EIGGRFREIRKQLGLSQQEFASVLGVTQATASRIERGEVSATVEALSGLLCAYPDLDVGY 72

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------ 121
            +C       S      +    I  +    +                 + + VP      
Sbjct: 73  ILCGNTSAIQSPCPDALEVAANICPVIRTMNSDLSDVQQENVA----DDYLAVPLLEGKA 128

Query: 122 -------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
                         +   +      +      +    SM P    G I+I++   +   G
Sbjct: 129 AAGAGGVTWNQVKSLVWVYKPELGQRRNCVALRVWGDSMEPTIPDGSIVIVDLDQREPDG 188

Query: 169 DR-LLI--KPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIE--WIARILW 220
               +   +   GD + K L         ++S N   Y    V   D     I R++W
Sbjct: 189 RGEHVWALRTEDGDTIIKRLRQTPQGVWVIISDNSMSYGPSIVWTGDFHRLVIGRVIW 246


>gi|170025321|ref|YP_001721826.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|169751855|gb|ACA69373.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis
           YPIII]
          Length = 240

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 22/233 (9%)

Query: 2   TSFSHKKI--WEAIDRMAERH----NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++   + +  + E       +T   +A   G+   +                + 
Sbjct: 5   KELTTEQLEDAKRLKALYESKKKTLGITQYTIADDLGISQGAVGHYLNGRN-----ALNA 59

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                   A   +I         +         E P      + +   F +         
Sbjct: 60  PIASVFAKALQVSISDFSPSIAREVSGYAASNTEDPQRPVILAYTYPLFSTVQAGAFAAV 119

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGD 169
            +    + +   +            +    SM       P + +G +++++    V  GD
Sbjct: 120 GSYTEKDAKDWISTTKKASDSAFWLEVSGHSMTAPQGVKPSFPEGMLILVDPQENVKYGD 179

Query: 170 RLLIKPRTG-DIVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARIL 219
             +       ++  K  +   G    L  L  N  Y     +  +   I +++
Sbjct: 180 FCVAGTHNDTEVTFKKFVWDDGYR-WLEPLNNNPRYQSILFD-DNCRIIGKVV 230


>gi|325287801|ref|YP_004263591.1| phage repressor like transcriptional regulator, XRE family
           [Cellulophaga lytica DSM 7489]
 gi|324323255|gb|ADY30720.1| phage repressor like transcriptional regulator, XRE family
           [Cellulophaga lytica DSM 7489]
          Length = 201

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 20/212 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I  + E   +  + LA K G      N   +       R PS E +++I        
Sbjct: 1   MNRIKYVLEDKGIKQTWLAEKLGKSYNMVNSYVQN-----RRQPSLELLYEIAHILQVEA 55

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LLD   +   T    + +   +    S + G     +F   +    + V         
Sbjct: 56  RDLLDGNQAVFNTNNTVKTDTVSIPLVGSVACGLP---IFAEEHIEAKIEVSTKLVKK-- 110

Query: 130 IYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                +     +    SM       GD+L++        GD +L      +   K  I  
Sbjct: 111 ----PSDYFLLRATGDSMNKKGINSGDLLLIKRQHTAETGDLVLALLD-NEATVKEFI-N 164

Query: 189 RGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218
            G ++ L     N  +    +  +D +    +
Sbjct: 165 NGSNLVLKPHSTNPKHQPIILT-TDFKVQGVV 195


>gi|238924063|ref|YP_002937579.1| transcriptional repressor, LexA family [Eubacterium rectale ATCC
           33656]
 gi|238875738|gb|ACR75445.1| transcriptional repressor, LexA family [Eubacterium rectale ATCC
           33656]
          Length = 209

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 47/216 (21%), Gaps = 27/216 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
             K+I E I          PS                            ST S+   L  
Sbjct: 14  KQKEILEFIKSEILNRGYPPS------------VRDICEGV-----HLKSTSSVHAHLET 56

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                    D   +           +           G         G     V   E  
Sbjct: 57  LERKGYIRRDPAKNRAIEIIDDSFGLQRREMVNVPLVG-----RVAAGEPILAVENIETY 111

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            P    Y    Q    K +  SM+      GD +++      + GD ++          K
Sbjct: 112 FPVPAEYMPNKQSFMLKVKGESMINAGIFDGDNILVEQQSDASNGDMVVALID-DSATVK 170

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                    I L   N       V   D E + ++ 
Sbjct: 171 TFYK-ENGHIRLQPENDTMDPIIVP--DCEILGKVF 203


>gi|291546183|emb|CBL19291.1| SOS-response transcriptional repressor, LexA [Ruminococcus sp.
           SR1/5]
          Length = 206

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 49/218 (22%), Gaps = 30/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I + +          PS   +     L  TS                S  S  + L
Sbjct: 9   KQQEILDYMKNEILNRGFPPSVREICEAVNLKSTS----------------SVHSHLEAL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P          G    G     V   +
Sbjct: 53  EKNGYIRRDATKPRAIEIIDDNFNLVRREVVNVPLV--------GTVAAGQPILAVENID 104

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    Y    Q      +  SM+      GD +++        GD ++         
Sbjct: 105 AYFPIPAEYMPNEQSFMLTVKGDSMINAGIFDGDQVLVKQQATAENGDMVVALID-DSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       +  + ++ + ++ 
Sbjct: 164 VKTFYK-ENGYYRLQPENDNMEPIIITGN-LQILGKVF 199


>gi|39996717|ref|NP_952668.1| LexA repressor [Geobacter sulfurreducens PCA]
 gi|47605797|sp|P61609|LEXA2_GEOSL RecName: Full=LexA repressor 2
 gi|39983598|gb|AAR34991.1| LexA repressor [Geobacter sulfurreducens PCA]
 gi|307634889|gb|ADI84452.2| LexA repressor [Geobacter sulfurreducens KN400]
          Length = 203

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 37/226 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   + + E I    +RH   P+   +AR   ++                    T 
Sbjct: 1   METLTSRQRTVLEFITAHVDRHGYPPTMREIARHLNVN-------------------GTL 41

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K L A         +   S G T   + +  P +  P              T     
Sbjct: 42  GVAKHLEALARKGYLQREPGNSRGITLTGQTRHTPTVSLP-VIGVVRAGVPQIATEEIEE 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            + + +          ++      + +  SM+     +GD+ ++         D ++   
Sbjct: 101 HISIDQSL--------VKGGAFFLRVKGDSMINAAIIEGDLALVRPQQTAENRDIVVAMI 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE--MSDIEWIARIL 219
             G+   K    +    I L   N       V   + +   I +++
Sbjct: 153 D-GEATLKRFY-QGADHIRLQPENPNMAPIIVRSGVQEAWIIGKVV 196


>gi|261378025|ref|ZP_05982598.1| putative repressor protein [Neisseria cinerea ATCC 14685]
 gi|269145901|gb|EEZ72319.1| putative repressor protein [Neisseria cinerea ATCC 14685]
          Length = 228

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 21/212 (9%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL          
Sbjct: 18  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGEPFPGG 72

Query: 84  EK----KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ----- 134
            +                              G          + +     + I+     
Sbjct: 73  NQVKSVAYDTFGNEVDTDEFVFVPRYDIRAAAGYGQFVGHEEPVFTMAFRRHWIENYVTR 132

Query: 135 --TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N           +++     ++ K L    G  
Sbjct: 133 DTKNLSVISVKGDSMEGVLNDGDTILVNHGENTPKDGLYVLRINEN-LLVKRLQIVPGGI 191

Query: 193 IDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           I+++S N  YP   + +     D+E I R+ W
Sbjct: 192 INVISANEAYPAFEINLNNLTDDVEIIGRVEW 223


>gi|120612236|ref|YP_971914.1| putative phage repressor [Acidovorax citrulli AAC00-1]
 gi|120590700|gb|ABM34140.1| putative phage repressor [Acidovorax citrulli AAC00-1]
          Length = 225

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 25/226 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++++A   + +      S +AR  G  P +    +        R  S     K       
Sbjct: 7   RLYQAASEIRDVAG--QSAVARLLGESPQNLKNWE-------VRGVSKAGALKAEELIGC 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------- 119
           +   +L       R  E   +                       G     V         
Sbjct: 58  SAAWVLTGDGPATRRGETTARPPSPESSVSVPQLA----NTASMGTGSEMVPEDVMVGHL 113

Query: 120 --VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              P          +             SM P +  GD+L++++ ++    D + +    
Sbjct: 114 TLSPAWIGRTLRGLSTPENLRFIHAYGDSMEPTFLDGDVLLVDAGVRTLEVDGIYVLAAQ 173

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARILWA 221
             +  K +  R   + ++ S N       V      +E + +++W 
Sbjct: 174 NRLFIKRVRQRLDGAYEISSDNPTVKTVDVLDGKHAVEILGKVIWI 219


>gi|157963808|ref|YP_001503842.1| LexA repressor [Shewanella pealeana ATCC 700345]
 gi|189046548|sp|A8H9S0|LEXA_SHEPA RecName: Full=LexA repressor
 gi|157848808|gb|ABV89307.1| transcriptional repressor, LexA family [Shewanella pealeana ATCC
           700345]
          Length = 206

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +AR+ G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIADTGMPPTRAEIARRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                      +E              G    G    G    
Sbjct: 45  EHLKALAKKGCIEIMPGTSRGIKLTQESTEE-----------PDLGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   + +  SM  +   +GD+L ++   Q   G  ++ + 
Sbjct: 94  AQEHVEQHYKVDPAMFRPSADFLLRVRGDSMKNIGILEGDLLAVHKIEQARNGQIVVAR- 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L + N  Y    V+++
Sbjct: 153 VEDDVTVKRFEKK-GNKVFLHAENEDYSPIEVDLA 186


>gi|307251408|ref|ZP_07533323.1| Uncharacterized HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306856576|gb|EFM88717.1| Uncharacterized HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 238

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 21/219 (9%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           + E+ N   S  +R  G+  TS N+      +     PS  ++ K   A   ++  L   
Sbjct: 19  LKEKFNGNNSEFSRAVGIAITSLNRWLIGEAD-----PSRSNLIKTAKAAGVSLEWLATG 73

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT------GNKWNTVGVPEIRSPHNG 129
             S  +  +   +         S          F        G+    V  P+ + P++ 
Sbjct: 74  KESQQQPQQGIVERAFERLKGFSDEMVSMVDSFFSINVSAGFGSFNEGVTKPDGQEPYSN 133

Query: 130 IYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
               +             +  SM P    GD ++++   +   G+ + +      +  K 
Sbjct: 134 ELLQKLGVQAEYCGVFWARGRSMHPTISDGDQMLVSFKHKEVIGNNIYLVQNGDSVWVKR 193

Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARIL 219
           +       ++L+S N   Y    +   +   ++ I ++ 
Sbjct: 194 VKILWDG-VELISDNKDEYAPIKITADEAQNLQIIGQVF 231


>gi|291524798|emb|CBK90385.1| SOS-response transcriptional repressor, LexA [Eubacterium rectale
           DSM 17629]
          Length = 204

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 47/216 (21%), Gaps = 27/216 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
             K+I E I          PS                            ST S+   L  
Sbjct: 9   KQKEILEFIKSEILNRGYPPS------------VRDICEGV-----HLKSTSSVHAHLET 51

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                    D   +           +           G         G     V   E  
Sbjct: 52  LERKGYIRRDPAKNRAIEIIDDSFGLQRREMVNVPLVG-----RVAAGEPILAVENIEAY 106

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            P    Y    Q    K +  SM+      GD +++      + GD ++          K
Sbjct: 107 FPVPAEYMPNKQSFMLKVKGESMINAGIFDGDNILVEQQSDASNGDMVVALID-DSATVK 165

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                    I L   N       V   D E + ++ 
Sbjct: 166 TFYK-ENGHIRLQPENDTMDPIIVP--DCEILGKVF 198


>gi|222086522|ref|YP_002545056.1| hypothetical protein Arad_3094 [Agrobacterium radiobacter K84]
 gi|221723970|gb|ACM27126.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 262

 Score = 81.7 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 62/254 (24%), Gaps = 41/254 (16%)

Query: 6   HKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNR------------- 51
            K + E +    E  N +  +  A   G+  +++   +    E                 
Sbjct: 2   QKSMGERLKAAREAANYSSATKAAEALGVSLSTYRAHENGQNEFGPEIADRYAKKFGTTA 61

Query: 52  --WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
               + E   K+       +         +    E  E          S   G       
Sbjct: 62  GYLLTGEGPRKVERPGPRMVTSFDPDEQYNEGFAEDGENVSYSREHWQSKIEGATPEVDV 121

Query: 110 PTGNK---------------------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
             G                            V  +    N   A        +    SM 
Sbjct: 122 KLGAGSGIVGEVINLPVGAGNVAGHKIIAEWVIPVGYLRNEAKASPNHTIIMEVIGDSMQ 181

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRR---GRSIDLMSLNCCYPV 204
           P Y  GD +I++ +  +   D +        +   K L          I ++S N     
Sbjct: 182 PTYMPGDRVIVDLSQNLMVTDTVYAISDGYSEPQIKRLQRIPFTQPSQIKIISDNPALET 241

Query: 205 DTVEMSDIEWIARI 218
            TVE+  +  I RI
Sbjct: 242 FTVELERLTIIGRI 255


>gi|184157525|ref|YP_001845864.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332875425|ref|ZP_08443251.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
 gi|183209119|gb|ACC56517.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322507840|gb|ADX03294.1| putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323517440|gb|ADX91821.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332736361|gb|EGJ67362.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
          Length = 223

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 56/218 (25%), Gaps = 6/218 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNE 67
           + + +     +   T + +A    +   ++   +          P       +       
Sbjct: 3   LKDRLKDSRIKAKRTQAEVAEAVKMSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTT 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRS 125
              +           T           +       F           ++ +   +P   S
Sbjct: 63  GNSEDSFRESDVFNPTVVSNDAADQYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPAS 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                   Q      K +  SM    + GD++ ++ +        +      G+ + K +
Sbjct: 123 FFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMIKQI 182

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
                 S+ L SLN  +    V      + + + R  W
Sbjct: 183 FKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220


>gi|227872378|ref|ZP_03990727.1| repressor lexA [Oribacterium sinus F0268]
 gi|227841777|gb|EEJ52058.1| repressor lexA [Oribacterium sinus F0268]
          Length = 235

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 22/227 (9%)

Query: 4   FSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWP 53
            + K+  I+  I    +  N  PS   +  + GL  TS      N  ++ G+  +    P
Sbjct: 13  LTEKQLAIYNYIKECVQIRNYPPSVRDICTEVGLKSTSSVFSYLNDLEQAGLIRKDPSHP 72

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
               I     + +    +           T + E+ +  +   P        + +F   N
Sbjct: 73  RAIEILDKSHSHSGKAPKSNKTKDISAIKTPEVEETMKEMVSVPVIGTVAAGTPIFAEEN 132

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +   +P    P+        +    K +  SM+ +    GD L++      + G+ ++
Sbjct: 133 VSDHFPLPTEILPNQ-------ETFILKVKGDSMINVGIFDGDYLMVAKQNTCSDGEVVV 185

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                     K     +   I L   N       V  +D + + + +
Sbjct: 186 AL-VEDSATVKRFYKEK-GYIRLQPENDTMEDIIV--NDCQILGKAI 228


>gi|225851071|ref|YP_002731305.1| repressor LexA [Persephonella marina EX-H1]
 gi|225645812|gb|ACO03998.1| repressor LexA [Persephonella marina EX-H1]
          Length = 206

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 67/222 (30%), Gaps = 34/222 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDP-TSFNKSKRFGIEGRNRWPSTES 57
           M +   K+I + I +   ++  +P+   +A   GL   ++ +                E 
Sbjct: 1   MLTKRQKEILQFIGQFYSQYGYSPTLKEIADYFGLSAVSTIH----------------EH 44

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           I K++            +  +  +  E++  + P      +G             + +  
Sbjct: 45  IEKLVKEGYLIRTGRGKIRINREKLFEEEPLKFPFYGHIAAGRPIEI------EQDIFEY 98

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176
           V + +                  K +  SM+      GDI+I+ +   V  G+  ++   
Sbjct: 99  VDLTD--------LIQCDNCYALKVKGNSMIDEHIMDGDIIIVENRKDVLNGEVAVVLID 150

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             +   K         + L+  N        E   I+    +
Sbjct: 151 GEEATLKKFYLLDNGMVKLVPANEELEPMYYEADRIQVQGVV 192


>gi|329115182|ref|ZP_08243937.1| Transcriptional Regulator [Acetobacter pomorum DM001]
 gi|326695625|gb|EGE47311.1| Transcriptional Regulator [Acetobacter pomorum DM001]
          Length = 265

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 78/268 (29%), Gaps = 57/268 (21%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +   + + ++R      L+   LARKAG+  T      R  ++G++R P  E +  I A
Sbjct: 1   MTRSPVADELERRMALLGLSQKALARKAGVGDTYV----RDILKGKSRNPGGEKLECIAA 56

Query: 64  ATNETICQLLDLPFSDGRT-----TEKKEKEIPLLYFPPSGSGGFFDSGVFPT------- 111
               T   LL       +        +     P      + + G                
Sbjct: 57  VLGCTARDLLFPGVDHTQPGLMLRERRTPYLPPPFTPATAPTRGRLHHSCASATRMAPPP 116

Query: 112 ---------GNKWNTVGVPEIRSPHNGIY----------------------AIQTQDTRH 140
                       +  V     R   +G Y                      A        
Sbjct: 117 LSAPPPAPAPPGYVVVPFLAQRGTASGRYDEAQMLGSPKYFEESLITQRLNARAENLRAL 176

Query: 141 KTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKV-----LISRRGRSI 193
             +  +M PL R GD +++++        G  +L     G+ V           +    +
Sbjct: 177 SVEGQAMEPLLRDGDTVLMDTRRTTMAEPGLFVLF---DGENVVCRWAERTFDPQGRPLV 233

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARILWA 221
            +   N  +   T+  S ++ + R++W 
Sbjct: 234 QISCENKRFSACTLPASRVQILGRVVWY 261


>gi|321157314|emb|CBW39296.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae]
          Length = 228

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 60/220 (27%), Gaps = 15/220 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   +T   +A + G+   +++  +R   +          + +IL        
Sbjct: 5   EKLKARRKELKMTQKDIADQLGITYQAYSTWERGIKQPSREKIKL--LEQILNVPKGYFT 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLL----------YFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  +   +  + E K   +  +                   +             +   
Sbjct: 63  EVEIVRLYNTLSDEGKNNALSYVRGLVQKEKCKNIVSMSEKLYEYHVYEQMSAGIGSPVY 122

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            +              D        SM P Y+ G + ++        G  +         
Sbjct: 123 NDQNYDTVYFDEELAHDFASWISGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQT 181

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             K +  +  + + L+S+N  Y    +   +    +  I+
Sbjct: 182 YIKRVY-QEEQGLRLVSINPKYRDIFLSYDEDPRIVGIIV 220


>gi|66768818|ref|YP_243580.1| LexA repressor [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991933|ref|YP_001903943.1| LexA repressor [Xanthomonas campestris pv. campestris str. B100]
 gi|48474593|sp|Q93MQ9|LEXA_XANCA RecName: Full=LexA repressor
 gi|15150332|gb|AAK85397.1|AF399933_1 LexA [Xanthomonas campestris]
 gi|66574150|gb|AAY49560.1| LexA [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733693|emb|CAP51898.1| LexA repressor [Xanthomonas campestris pv. campestris]
          Length = 213

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    E   +  + + +AR  G       +               E++ +  
Sbjct: 6   TQQAILALIAERIETDGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                         E P+             +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGAAAHARAAPAEEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|332974608|gb|EGK11526.1| LexA family repressor/S24 family protease [Psychrobacter sp.
           1501(2011)]
          Length = 212

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 66/216 (30%), Gaps = 21/216 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + + +  +     L+   L  K G+  T+    +        +    + + K+   + 
Sbjct: 2   QTLGQRLFNLRRSKKLSRDALGAKIGVSKTAIKNWEEDSN--FPKHEFIDGLSKVFGCSI 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +   +    +         + +P+L +  +G    +           +   V      
Sbjct: 60  GYLVDGIPDGDNFKILPMDNVRRVPVLNYVQAGEFCEYFDDAIA-----DMFEVIIGDY- 113

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVL 185
                           +  SM P +  GD+++++   Q + GD ++ K      +  K  
Sbjct: 114 -------PPHVHWVIIEGLSMTPDFNPGDLILVDPDTQPSPGDYVVAKKAGENAVTFKKW 166

Query: 186 ISRR--GRSI---DLMSLNCCYPVDTVEMSDIEWIA 216
             R      I   +L+ LN  +P+     +      
Sbjct: 167 RPRGFDDDGIEYCELVPLNPDFPIIDSRHTPFTICG 202


>gi|134295441|ref|YP_001119176.1| putative phage repressor [Burkholderia vietnamiensis G4]
 gi|134138598|gb|ABO54341.1| putative phage repressor [Burkholderia vietnamiensis G4]
          Length = 254

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            N ++A  T  +    +  S+  +    D+++++ +         +++   GD++ K L 
Sbjct: 153 ENYLHACPTDLSVLSVKGDSLQGILNDRDVILIDRSQTTGSAGLYVLRID-GDVIVKTLQ 211

Query: 187 SRRGRSIDLMSLNCCYPVDTV----EMSDIEWIARILWA 221
              G  + + S N  Y    V      SD E I R++WA
Sbjct: 212 RLPGGILKVSSANTAYEPFEVNMAQPPSDFEIIGRVVWA 250


>gi|294665633|ref|ZP_06730910.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604579|gb|EFF47953.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 213

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + +AR  G       +               E++    
Sbjct: 6   TQQAILALITERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEHAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  T                      +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGQGAQTRTAPVSEAARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|295105867|emb|CBL03410.1| SOS-response transcriptional repressor, LexA [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 212

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 53/218 (24%), Gaps = 24/218 (11%)

Query: 6   HKKIWEAIDRMAERHNL--TPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            K + + I+          T   + +  GL  P++ +   +   E          + K  
Sbjct: 9   QKAVLDCIEECIREKGYGPTVREVCQSLGLSSPSTVHVHLKALEEKG--------LIK-R 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                    L          +   +     +   P        S +    N  +T+ +P 
Sbjct: 60  DPLKSRSIALTYPLGDTESASNVVKPSFNKVVNVPLVGNVAAGSPILAEENITDTISLPT 119

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                               +  SM       GD +++      N GD ++         
Sbjct: 120 DIVG-------DAPSFLLSVRGESMIEAGINDGDYVVVKEQPVANNGDIVVAIID-DGAT 171

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K         I L   N          +D     +++
Sbjct: 172 VKRFYKESD-HIRLQPENSTMEPII--TTDCSIAGKVV 206


>gi|217077631|ref|YP_002335349.1| LexA repressor [Thermosipho africanus TCF52B]
 gi|226736106|sp|B7IDD1|LEXA_THEAB RecName: Full=LexA repressor
 gi|217037486|gb|ACJ76008.1| LexA repressor [Thermosipho africanus TCF52B]
          Length = 198

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 35/223 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   ++++  + + I    +++  +                             PS   I
Sbjct: 1   MKELTNRQKMVLDFITSYIQQNGYS-----------------------------PSIRDI 31

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K    T       +      G  T   +    +       +      G    G      
Sbjct: 32  AKHFKLTPRGAHIHVLALEKKGYITRNPKNSRSISLVKRPETVSIPVKGKISAGQGIEMF 91

Query: 119 GVPEIRSPHNGIYAIQ-TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            + +                   + + TSM       GD +IL    ++  G    +   
Sbjct: 92  ELVDEEIEIPVRMINGYGNYFALRVEGTSMIEAHIIDGDYVILKKQYRIPNGQIAAVVFD 151

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +  K    +    ++L+  N        +  D++ I +++
Sbjct: 152 -NKVTLKRFYHK-NDKVELVPENSSMSPIICDAKDVKVIGKLV 192


>gi|193071379|ref|ZP_03052295.1| putative repressor protein [Escherichia coli E110019]
 gi|192955295|gb|EDV85782.1| putative repressor protein [Escherichia coli E110019]
          Length = 219

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 64/215 (29%), Gaps = 15/215 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + +   + R+ +   LT   L + +G+   +    ++   E     P ++++ K
Sbjct: 1   MQEKMMESLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   T   LL    S   +  +      + Y     +  F       T    + +  
Sbjct: 56  LAQALGTTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITT 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----P 175
                  +   ++          + S  P    G  +IL        G  + +       
Sbjct: 116 FFDVEEGDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLK 171

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
               +  K L+   G+ + L  LN  Y    +   
Sbjct: 172 NEPSMTIKKLV-IDGKLVYLSPLNPRYQSSLLTPE 205


>gi|312792312|ref|YP_004025235.1| lexa repressor [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179452|gb|ADQ39622.1| LexA repressor [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 428

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           I +   +    K +  SM     + GDI I+         D ++     G+I  K     
Sbjct: 333 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVI-AWLDGEITVKRFCKM 391

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G ++ L+  N  Y    ++  ++  + +++
Sbjct: 392 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 421


>gi|289168204|ref|YP_003446473.1| cI-like repressor, S. pneumoniae bacteriophage EJ-1 [Streptococcus
           mitis B6]
 gi|288907771|emb|CBJ22608.1| cI-like repressor, S. pneumoniae bacteriophage EJ-1 [Streptococcus
           mitis B6]
          Length = 262

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 67/249 (26%), Gaps = 37/249 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN---------- 50
           M  FS       ++ +    N     L+R  G+  ++     +                 
Sbjct: 16  MKVFS-----ANLNAILSDRNCKQVELSRATGIPASTLTGYVKGTSLPIPGNVQKIADHF 70

Query: 51  -------------------RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
                                P+   I  I           +          +K E +  
Sbjct: 71  GVLKSTLDPRFASEDSSIEITPTASQIQSIYDQLAPPRQGKVLTYAERQLDEQKNEDKTK 130

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
           +          +         +      + +IR     +      D     +  SM P Y
Sbjct: 131 INEVSEKIVQLYGYDYYDHAASAGTGQYLNDIRVERIELPVDVDADFVIPIKGDSMEPDY 190

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS- 210
             GD++ + +++ +N G   +     G+   K L+    +S  L SLN  Y    +    
Sbjct: 191 HDGDLVFIQTSVDLNDGVIGV-FNYNGEAYIKQLVIDTEQSY-LHSLNPAYKDMPITPET 248

Query: 211 DIEWIARIL 219
           D   I  ++
Sbjct: 249 DFRIIGEVV 257


>gi|311107150|ref|YP_003980003.1| LexA repressor [Achromobacter xylosoxidans A8]
 gi|310761839|gb|ADP17288.1| LexA repressor [Achromobacter xylosoxidans A8]
          Length = 216

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 59/210 (28%), Gaps = 24/210 (11%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62
            ++I + I +   R    P  + +A   G                  R P+  E   K L
Sbjct: 9   QQQILDLIRQTVARTGFPPTRAEIALALGF-----------------RSPNAAEDHLKAL 51

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                 +       +  L   P          G    G+        E
Sbjct: 52  ARKGAIELTAGASRGIRLKDASPTSTQSALPM-PGLAQLLLPLVGRVAAGSPILAAEHVE 110

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +     Q  D   K +  SM      +GD+L +  A +   G  ++ +    D+ 
Sbjct: 111 REVGVDPNLFAQAPDYLLKVRGMSMRDAGILEGDLLAVKKASEARNGQIVVAR-LGDDVT 169

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L  +    I+L+  N  +    VE   
Sbjct: 170 VKRLQRQ-NGHIELLPENPDFEPIVVEAGQ 198


>gi|153810904|ref|ZP_01963572.1| hypothetical protein RUMOBE_01288 [Ruminococcus obeum ATCC 29174]
 gi|149833300|gb|EDM88382.1| hypothetical protein RUMOBE_01288 [Ruminococcus obeum ATCC 29174]
          Length = 220

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 50/218 (22%), Gaps = 30/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I + I          P+   +     L  TS                S  S  + L
Sbjct: 18  KQQEILDYIKNEILNRGFPPAVREICEAVNLKSTS----------------SVHSHLEAL 61

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P           +    N      VP 
Sbjct: 62  EKNGYIRRDATKPRAIEIIDDNFNLVRREVVNVP-LVGTVAAGQPMLAVENIEGYFPVPA 120

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                   Y    Q    K +  SM+      GD +++      + GD ++         
Sbjct: 121 E-------YMPNAQSFMLKVKGDSMINAGIFDGDQVLVRQQSSASNGDIVVAL-VEDSAT 172

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V   +++ + ++ 
Sbjct: 173 VKTFYK-EDGYYRLQPENDSMEPILVH-DNLKILGKVF 208


>gi|326571077|gb|EGE21101.1| peptidase S24-like protein [Moraxella catarrhalis BC7]
          Length = 240

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 66/224 (29%), Gaps = 16/224 (7%)

Query: 13  IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           ++++ +   L + + +A++  L+ +  ++      +   R  S  S+ K L     ++  
Sbjct: 14  LEKIEKEKGLNSFAKIAKEYDLNASYLSQLMNGNRQIGER--SARSLEKKLKLEKFSLDN 71

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN--- 128
                  +       E +             F+    F  G+       P          
Sbjct: 72  CPLQSNINPDFESITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGR 131

Query: 129 ----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +  +          D SM P  + GD + ++   +     R+         + K 
Sbjct: 132 RTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKR 191

Query: 185 LISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
           L       + ++S N   +P        +   + E I  +   S
Sbjct: 192 LYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 235


>gi|171914342|ref|ZP_02929812.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136]
          Length = 286

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 60/213 (28%), Gaps = 9/213 (4%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               E    T   L++  G         +     GR       +I   L    E + Q  
Sbjct: 68  RDAREAKGWTIRDLSKATGYAVGVLQAME--EASGRASEKMINAISTALGIPVEDLMQGS 125

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
           D P     T              P G+       +             +    + G  A+
Sbjct: 126 DAPKIIDETGRTGTMGAIPNLQVPPGTTARIIPHLSFAQAGKMEACWEDGGYEYEGRVAL 185

Query: 134 ---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLI-- 186
                +    + +  SM      GD +++  + +   G  +L +     G  V   L   
Sbjct: 186 NVKDPKAFTVEIRGDSMEDKISPGDTIMVYPSKEPRNGSVVLARLTDDAGGDVFCKLYTA 245

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +G+ + L S N  YP       D  +I  ++
Sbjct: 246 KNQGKEVLLTSFNPAYPPMEYRREDFRFIYPVV 278



 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 6/106 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  +  R  LT    A K  L      + +        R PS ES+  +L    +   
Sbjct: 5   ERLKALRTRLGLTQRDFAEKLKLSVGYVYQLEAG-----KRAPS-ESLLVLLDLIEKEAA 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                        E K   I  L      + G   +    +G    
Sbjct: 59  ATPSPRSKMRDAREAKGWTIRDLSKATGYAVGVLQAMEEASGRASE 104


>gi|332519441|ref|ZP_08395908.1| Peptidase S24/S26A/S26B, conserved region [Lacinutrix algicola
           5H-3-7-4]
 gi|332045289|gb|EGI81482.1| Peptidase S24/S26A/S26B, conserved region [Lacinutrix algicola
           5H-3-7-4]
          Length = 270

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 18/229 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG----RNRWPSTESIFKILA 63
            I E I  +    NL     +++ G+  T+ +       +     +   P  + +  I+ 
Sbjct: 3   DIAEKITAIINHFNLNNYAFSKRIGVTGTTIDSIVNGRPQNDGSRKKTKPGYDVLKAIID 62

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTG------NKWN 116
             +     L     +  ++   K +    +       +    +    P        + + 
Sbjct: 63  EFDINPDYLFGKSHTMLKSETPKIQTYTGVPQVIAVNNNDQENVIYVPVKARAGYLDGYG 122

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLI 173
                E                  + Q  SML  +  GD++    + +   +  G   +I
Sbjct: 123 DTEYIEKLPSFYMPQLTNGTFRCFEVQGNSMLRTFYDGDLVFGKYVENLNDIKDGHVYVI 182

Query: 174 KPRTGDIVAKVL--ISRRGRSIDLMSLNCC--YPVDTVEMSDIEWIARI 218
             +   IV K +    ++   + L S N    YP   +   +I  +  +
Sbjct: 183 VSKNDGIVLKRILKQIKQDNKLVLKSDNKDGNYPDYNINTEEIMEVWYV 231


>gi|293606137|ref|ZP_06688502.1| LexA repressor [Achromobacter piechaudii ATCC 43553]
 gi|292815592|gb|EFF74708.1| LexA repressor [Achromobacter piechaudii ATCC 43553]
          Length = 230

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 60/210 (28%), Gaps = 25/210 (11%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62
            ++I + I +   R    P  + +A+  G                  R P+  E   K L
Sbjct: 24  QQQILDLIRQTVTRTGFPPTRAEIAQALGF-----------------RSPNAAEDHLKAL 66

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A       +L        R  +           P          G    G+        E
Sbjct: 67  ARKG--AIELTAGASRGIRLKDNPTTSPTSSAIPSLAQLLLPLVGRVAAGSPILAAEHVE 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +     Q  D   K +  SM      +GD+L +  A +   G  ++ +    D+ 
Sbjct: 125 REVGVDPHLFAQAPDYLLKVRGMSMRDAGILEGDLLAVKKASEARNGQIVVAR-LGDDVT 183

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L       I+L+  N  +    VE   
Sbjct: 184 VKRLQR-TNGHIELLPENPDFQTIVVEADQ 212


>gi|110803786|ref|YP_698499.1| LexA repressor [Clostridium perfringens SM101]
 gi|123146159|sp|Q0STQ8|LEXA_CLOPS RecName: Full=LexA repressor
 gi|110684287|gb|ABG87657.1| LexA repressor [Clostridium perfringens SM101]
          Length = 203

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 59/221 (26%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRN-RWPSTESIF 59
              +I+  +    +     PS   + +   L  TS      KR   +G   R P+     
Sbjct: 9   KQTQIYNFLIEFTKSKGYPPSVREICQAVSLKSTSTVHGHLKRLEKKGLIYRDPTKPRAL 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+  +N                      E   L   P          +  T N  +   
Sbjct: 69  EIVELSN----------------------EEKELIDIPIVGKVTAGMPILATENIEDMFQ 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P     HN            K    SM       GD+ I+        GD ++      
Sbjct: 107 IPINYVKHNN------DLFILKVTGDSMIEAGILDGDLAIIEQKNIATNGDIVVALI-EN 159

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K         I L   N  Y    V   D   + +++
Sbjct: 160 EATIKRFFK-ENGFIRLQPENKNYEPIIV--EDCSILGKLV 197


>gi|301059953|ref|ZP_07200836.1| repressor LexA [delta proteobacterium NaphS2]
 gi|300445962|gb|EFK09844.1| repressor LexA [delta proteobacterium NaphS2]
          Length = 201

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/190 (10%), Positives = 52/190 (27%), Gaps = 13/190 (6%)

Query: 36  TSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL-----DLPFSDGRTTEKKEKEI 90
           +  ++      +   + PS E +       +               +      + K++ +
Sbjct: 12  SYISQYI----DAWRKSPSFEEVCSHFGFASYNTVSSYLNILERKGYIRRPKEKNKKRVV 67

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-P 149
            ++    +    F   G    G     +             A +      + +  SM   
Sbjct: 68  EVISPVETRRFEFPLLGRVAAGAPIEAIE-DVDVVEVPPSMANEGDCFVLQVKGVSMEED 126

Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
               GD +++        G+ ++     G    K     +   ++L   +   P   V+ 
Sbjct: 127 GILDGDFVVIRKQATAKNGEIVVALAD-GGATVKRYYRYKN-YVELRPSHGEMPPIRVQG 184

Query: 210 SDIEWIARIL 219
            D     +++
Sbjct: 185 EDFHIEGKVV 194


>gi|294637311|ref|ZP_06715609.1| toxin-antitoxin system, antitoxin component, Xre family
           [Edwardsiella tarda ATCC 23685]
 gi|291089519|gb|EFE22080.1| toxin-antitoxin system, antitoxin component, Xre family
           [Edwardsiella tarda ATCC 23685]
          Length = 216

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 12/212 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I        L    L    G    + ++    G E  +++ S   +  +L  +   + 
Sbjct: 8   DRISLRMRTLKLKSKDLTDATGASKGTVSQWVNGGTEPSSKYMS--PLAGVLGVSERWLL 65

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           +   +    G      +    +       +G + +            +      SP+   
Sbjct: 66  EGGHIEEVSGNAIPGPDLYRRVPLLSQVQAGNWKEIVENHFDELTEWIETTAKVSPYAFS 125

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRR 189
             +      +     S      +G I+I++       G  ++ + + T +   K L    
Sbjct: 126 LRVVGDSMSNPGSGVS----LPEGSIVIVDPEGDPVNGRIVVARLKSTNEATVKKLSIDG 181

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218
              I LM LN  Y    ++ S  E +    R+
Sbjct: 182 PN-IYLMPLNPNYKPIQLD-SMCEIVGVCVRV 211


>gi|302874911|ref|YP_003843544.1| transcriptional repressor, LexA family [Clostridium cellulovorans
           743B]
 gi|307690469|ref|ZP_07632915.1| LexA repressor [Clostridium cellulovorans 743B]
 gi|302577768|gb|ADL51780.1| transcriptional repressor, LexA family [Clostridium cellulovorans
           743B]
          Length = 200

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 54/210 (25%), Gaps = 38/210 (18%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
              +I+  I  ++      PS   +    GL  TS      +R    G   R PS     
Sbjct: 7   KQMEIYNYIKSVSAERGYPPSVREICTAVGLSSTSTVHGHLERLEKRGYIRRDPSKPRAI 66

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++L      +                           P        + +    +  +T  
Sbjct: 67  ELLKENKVEML------------------------SIPIIGKVTAGNPILAFEDIEDTFT 102

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P      N       +    K    SM     R GD+ I+      N GD ++     G
Sbjct: 103 IPSQFIKSN------KELFMLKVSGESMVEAGIRDGDLAIIEKQNTANNGDIVV-AMIEG 155

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           +   K         I L   N       V 
Sbjct: 156 EATIKTFYREEN-HIRLQPENKLLSPIIVN 184


>gi|57237226|ref|YP_178238.1| phage repressor protein, putative [Campylobacter jejuni RM1221]
 gi|57166030|gb|AAW34809.1| phage repressor protein, putative [Campylobacter jejuni RM1221]
          Length = 209

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 22/222 (9%)

Query: 1   MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     + I +  D +A     +L    +A++ G++P +FN  K               I
Sbjct: 1   MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGINPDTFNSMKFRNSIPYP------QI 52

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L   N +I           +   + + +I  LY   +  GG         G   + +
Sbjct: 53  LNFLNERNISINYFFYGVSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 103

Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E+      + +    +         SM PL + G I +++           +     
Sbjct: 104 DCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKAFKNKSICV-INTR 162

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 203


>gi|300933032|ref|ZP_07148288.1| LexA repressor [Corynebacterium resistens DSM 45100]
          Length = 273

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 15/222 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESI 58
            +   ++I E I          PS   +A   GL   +S +       E          +
Sbjct: 57  PTERQRRILEVIQNSKSLRGYPPSIREIADAVGLQSTSSVSYHLNLLEEA-------GYL 109

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +          +  +         +   +           +      G    GN     
Sbjct: 110 RREDKKPRAVDVREYEKRGKKTPGRKPSVQVTGTDDESLPSATYVPVVGQIAAGNPILAE 169

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E   P  G      +    +    SM       GD + + S    + GD +      
Sbjct: 170 QNVEAHFPLPGELVGGGELFLLQVVGDSMRDAGILNGDWVAVRSQSTADFGDFVAAMID- 228

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   K         + L+  N  +          + + +++
Sbjct: 229 GEATVKEFHKDSDG-LWLLPHNDLFEPI--PAEHSQILGKVV 267


>gi|296113158|ref|YP_003627096.1| peptidase S24-like protein [Moraxella catarrhalis RH4]
 gi|295920852|gb|ADG61203.1| peptidase S24-like protein [Moraxella catarrhalis RH4]
          Length = 240

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 66/224 (29%), Gaps = 16/224 (7%)

Query: 13  IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           ++++ +   L + + +A++  L+ +  ++      +   R  S  S+ K L     ++  
Sbjct: 14  LEKIEKEKGLNSFAKIAKEYDLNASYLSQLMNGNRQIGER--SARSLEKKLKLEKFSLDN 71

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN--- 128
                  +       E +             F+    F  G+       P          
Sbjct: 72  CPLQSNINPDFESITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGR 131

Query: 129 ----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +  +          D SM P  + GD + ++   +     R+         + K 
Sbjct: 132 RTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKR 191

Query: 185 LISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
           L       + ++S N   +P        +   + E I  +   S
Sbjct: 192 LYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 235


>gi|194289925|ref|YP_002005832.1| lexa repressor [Cupriavidus taiwanensis LMG 19424]
 gi|229621212|sp|B3R2P9|LEXA_CUPTR RecName: Full=LexA repressor
 gi|193223760|emb|CAQ69767.1| transcriptional LExA repressor [Cupriavidus taiwanensis LMG 19424]
          Length = 217

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 21/216 (9%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I     R    P  + +A + G              E   R  + +
Sbjct: 1   MATLTPRQQQIFDLIRNTIRRTGFPPTRAEIAAEFGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++    +  I   +    S+             L             G    G+   
Sbjct: 54  GVIELTPGASRGIRLKVSRSDSELPDQFS-------LPMAGVLQLTLPLVGRVAAGSPIL 106

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +     +  D   + +  SM       GD+L +  A +   G  ++ + 
Sbjct: 107 AAEHIDRQYQVDASVFDERPDYLLRVRGLSMRDAGILDGDLLAVRRASEAANGKIVVAR- 165

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K L  R G  I+L++ N  +    VE  +
Sbjct: 166 LGDDVTVKRLQRR-GGHIELIAENPDFTNIIVEPGE 200


>gi|121594652|ref|YP_986548.1| LexA repressor [Acidovorax sp. JS42]
 gi|222110746|ref|YP_002553010.1| lexa repressor [Acidovorax ebreus TPSY]
 gi|171769452|sp|A1W897|LEXA_ACISJ RecName: Full=LexA repressor
 gi|254809095|sp|B9MI78|LEXA_DIAST RecName: Full=LexA repressor
 gi|120606732|gb|ABM42472.1| SOS-response transcriptional repressor, LexA [Acidovorax sp. JS42]
 gi|221730190|gb|ACM33010.1| SOS-response transcriptional repressor, LexA [Acidovorax ebreus
           TPSY]
          Length = 224

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 62/213 (29%), Gaps = 14/213 (6%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              +   ++I + I     R    P+     A L   S N ++                 
Sbjct: 5   PKLTARQQQILDLIQTAIARTGAPPTRAEIAAELGFKSANAAEEHLQA---------LAR 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K +        + + L     R           L  P          G    G+      
Sbjct: 56  KGVIELVSGTSRGIRLRGETVRNINAARGAQFNLPIPGLSQLTLPLVGRVAAGSPILAQE 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             +      G       D   K +  SM       GD+L + +  +   G  ++ +    
Sbjct: 116 HVDQTYTVEGSLFAHKPDYLLKVRGMSMRDAGIMDGDLLAVQATREARNGQIIVAR-LGD 174

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           D+  K L  R G +I+L+  N  YPV  VE  +
Sbjct: 175 DVTVKRL-RRTGSAIELLPENPDYPVIRVEPGE 206


>gi|283850428|ref|ZP_06367717.1| putative phage repressor [Desulfovibrio sp. FW1012B]
 gi|283574454|gb|EFC22425.1| putative phage repressor [Desulfovibrio sp. FW1012B]
          Length = 221

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 70/229 (30%), Gaps = 16/229 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + +  +  I         T + +A   G+  +S + +K+              +  
Sbjct: 1   MKPDTFEDAYARIQAATHTR--TQTEIANLLGIKQSSISDAKKKNTIP------DGWLVT 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  +       +L        +                 +     +          T   
Sbjct: 53  LYRSCGLEPDWILFGQEP--ASKGSAVSTGVRETASDYATAPTRATVYAMARTDSETGAW 110

Query: 121 PEIRSPHNGIYA--IQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRT 177
                 +  ++   ++      K  +T+M P+ R+G  + ++    ++  G+   +    
Sbjct: 111 VRQGLENIPVFEALVRPNLLVVKMDNTAMEPVIRRGAYVGIDCDDVRIRSGEIYALDFPG 170

Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223
             +V K ++     + + +++ N  +    + +   D+  + + +W  Q
Sbjct: 171 EGLVIKRVVRDLEAKRLTILADNPAHQPQHLPLDTPDVTPLGKAVWVIQ 219


>gi|218891251|ref|YP_002440117.1| cI repressor protein [Pseudomonas aeruginosa LESB58]
 gi|218771476|emb|CAW27243.1| cI repressor protein [Pseudomonas aeruginosa LESB58]
          Length = 268

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 68/262 (25%), Gaps = 48/262 (18%)

Query: 2   TSFSHKKI-----WEAIDRMA----ERHN----LTPSGLARKAGLD--PTSFNKSKRFGI 46
           T  S  ++      +AI +              L  + L  K G     ++ ++     +
Sbjct: 7   TPLSQSQLDDAKRLQAIYKKRVKESRERGENPILNQAELGEKCGWKSGQSTVSQYMTGRV 66

Query: 47  EGRNRWPSTESIFKILAATNETICQLLDL----------------PFSDGRTTEKKEKEI 90
                  + E++ K+         ++                   P  +       ++  
Sbjct: 67  -----ALNLEALVKLAEHLQFEPSEVSPTLASGIRRAGRPDGVKSPDREAANAPFPDRLD 121

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRSPHNGIY----AIQTQDTRHKTQD 144
                    +           G       V +    +                       
Sbjct: 122 AADLSEERYAFVPQYDAKAAAGLGSENPHVEIRATLAFKREWLKAKGVSPKSLAVIYADG 181

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC--- 201
            SM P    GD+L+++ +       ++ +   +   + K L+S       + S N     
Sbjct: 182 ESMEPTINDGDVLLVDLSKIEPEDHQVFVLAGSEGAIVKRLVSSPLGRWIIRSDNEDKAE 241

Query: 202 YPVDTV---EMSDIEWIARILW 220
           +P   +   +  +   I +++W
Sbjct: 242 FPDRNLSREDNDEHRIIGKVIW 263


>gi|296877345|ref|ZP_06901385.1| hypothetical transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
 gi|296431865|gb|EFH17672.1| hypothetical transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
          Length = 228

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 61/220 (27%), Gaps = 15/220 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +   LT   +A + G+   +++  +R   +        + + +IL        
Sbjct: 5   EKLKIRRKELKLTQKDIADQLGVSYQAYSAWERGVKQPSRE--KVQQLEQILNVPKGFFT 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLL----------YFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  +   +  + E K   +  +                   +             +   
Sbjct: 63  EIEIVRLYNTLSDEGKNNALSYVRGLVQKEKCKNIVSMSEKLYEYHVYEQMSAGIGSSVY 122

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            +              D        SM P Y+ G + ++        G  +         
Sbjct: 123 NDQNYDTVYFDEELAHDFASWISGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQT 181

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             K +  +  + + L+S+N  Y    +   +    +  I+
Sbjct: 182 YIKRVY-QEEQGLRLVSINPKYRDIFLSYDEDPRIVGIIV 220


>gi|154482891|ref|ZP_02025339.1| hypothetical protein EUBVEN_00588 [Eubacterium ventriosum ATCC
           27560]
 gi|149736175|gb|EDM52061.1| hypothetical protein EUBVEN_00588 [Eubacterium ventriosum ATCC
           27560]
          Length = 204

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 35/219 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIF 59
             ++I + I          P+   +  K GL  TS   S    +E      R P+     
Sbjct: 8   KQQQILDYIKEEILSKGYPPTVREICEKVGLKSTSSVHSHLSTLENNGYIRRDPTKPRAI 67

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                      +       +   P        + +    N  +   
Sbjct: 68  EIMDD--------------------EFGLVRREMTNIPIIGRVAAGAPLLAVENIEDYFA 107

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P    P+        +    K Q  SM+ + + +GD LI+  A Q + G+ ++      
Sbjct: 108 LPTEFLPN-------GEVFILKVQGESMINVGFYEGDYLIIEKAAQADNGEIVVALID-D 159

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            +  K         I L   N       V+   I  I R
Sbjct: 160 SVTVKRFFK-EDGHIRLQPENDLMEPIIVDDCAIVGIVR 197


>gi|120434637|ref|YP_860327.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117576787|emb|CAL65256.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 255

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 16/214 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
             + E +N T S  A   G+  ++    +R   +      S + + ++L         L 
Sbjct: 13  KEVREENNFTQSEFAALIGIKNST-ADIERGRTK-----LSGKVVAELLRQFGINPLWLF 66

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                      K +    ++    + +              +               + I
Sbjct: 67  GESGQKYLKISKGDVSPKVVTVDNADNENIVLVNQKAA-AGYPHNVQDVEWYNQLPAFDI 125

Query: 134 Q------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKVL 185
                        + +  SMLP YR G+ ++  +   +     +++ +      ++ K L
Sbjct: 126 PLPEFRNATYRGFQIEGDSMLPDYRPGEWVMGKAVSSIEEASNNKVYVIVMYDSVLVKKL 185

Query: 186 ISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                   + L+SLN  Y    + + DI+ I ++
Sbjct: 186 QKMPDPSKVLLISLNEEYLPLEINVHDIQEIWQV 219


>gi|83592360|ref|YP_426112.1| phage repressor [Rhodospirillum rubrum ATCC 11170]
 gi|83575274|gb|ABC21825.1| phage repressor [Rhodospirillum rubrum ATCC 11170]
          Length = 265

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 59/237 (24%), Gaps = 32/237 (13%)

Query: 7   KKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +     +R+A      + + LA + G   ++         E     P    +    A  
Sbjct: 29  DRAGRFSERLATALQGRSANWLAGRIGGSASTVRDWLSATSE-----PGLGKLVATAACL 83

Query: 66  NETICQ--------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
              +                        G    +    +       +   G         
Sbjct: 84  GVPLDWLATGRVAEGATAPPSDLFGERGGGAVTRAPLSVRPAEDETAPHRGLALYDTVAA 143

Query: 112 GN-------KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                        + +PE     +       +         SM P    GD+ ++++A +
Sbjct: 144 AARMGGGHPGAAGLDLPESYLRDHLRL-DPQRAIAVAVHGDSMEPALSDGDLALIDTATR 202

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARI 218
               D L      G+   K L      ++ + S N  Y   T+       +  + R+
Sbjct: 203 ALERDDLYAFLLEGEGYIKRLQKAGA-AVIVHSDNPAYSDWTIPREIMASMHLLGRV 258


>gi|325068467|ref|ZP_08127140.1| SOS-response transcriptional repressor, LexA [Actinomyces oris K20]
          Length = 262

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 64/223 (28%), Gaps = 22/223 (9%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTESIFK 60
           ++EA+      H   PS   +  + GL   S      +K +R G+  R    P    +  
Sbjct: 44  VYEAVRAAIATHGYPPSLREIGEQVGLTSPSSVKHQLDKLERLGLVRRDPNRPRAMEVVC 103

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             +A +           S   +      E       P        + +       + + +
Sbjct: 104 ADSAPSGRAATPGSAHVSSLDSPSVPGVEDGEAVAVPLVGRIAAGAPILAEQEVTDVMAL 163

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P   +        + +    +    SM       GD +++ S      G+ +       D
Sbjct: 164 PRRLTG-------EGELFMLEVHGDSMIEAAICDGDWVVVRSQPDAANGEIVAAMIEDVD 216

Query: 180 ---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 KVL  R      L+  N  Y     +      + +++
Sbjct: 217 GASATVKVLSRR-DGHQWLLPRNSSYAPI--DGDQATIMGKVV 256


>gi|167622201|ref|YP_001672495.1| LexA repressor [Shewanella halifaxensis HAW-EB4]
 gi|189046547|sp|B0TNT3|LEXA_SHEHH RecName: Full=LexA repressor
 gi|167352223|gb|ABZ74836.1| transcriptional repressor, LexA family [Shewanella halifaxensis
           HAW-EB4]
          Length = 206

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +AR+ G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIADTGMPPTRAEIARRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                      ++              G    G    G    
Sbjct: 45  EHLKALAKKGCIEIMPGTSRGIKLTQENTEDA-----------DLGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   + +  SM  +   +GD+L ++   Q   G  ++ + 
Sbjct: 94  AQEHVEQHYKVDPAMFKPSADFLLRVRGDSMKNIGILEGDLLAVHKIQQARNGQIVVAR- 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L + N  Y    V+++
Sbjct: 153 VEDDVTVKRFEKK-GNKVFLHAENEEYSPIEVDLA 186


>gi|56692918|ref|YP_164293.1| transcriptional regulator [Pseudomonas phage F116]
 gi|48527504|gb|AAT45879.1| transcriptional regulator [Pseudomonas phage F116]
          Length = 265

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 56/247 (22%), Gaps = 37/247 (14%)

Query: 8   KIWEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   AI         +T   +A   GL  T+ + +  +         + E+         
Sbjct: 17  QALNAIYKAKKRELGITQEKIA-LEGLGATTQSAASHYLTGKN--ALNAEAAAVFARYLE 73

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------- 119
             +         +        +  P+                 P       +        
Sbjct: 74  IQVRDFSPRLAEEIERMATTVRPKPVANTRGDLEPIPVWDDGDPLDADEVEIPYFNEIQI 133

Query: 120 ------------------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
                              P      +G+               SM PL   G I+ ++ 
Sbjct: 134 AAGDGRLPDLEQAKRKIRFPRTVLRESGV--DPKNSVCVNVTGNSMEPLIADGAIIGVDL 191

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE-----WI 215
           ++       +        +  K +    G  I L S N   YP +      +       I
Sbjct: 192 SVSTITDGEIYALKHDDMLRVKFVYRLPGGGIRLRSFNRDEYPDEEYTRDQMRESNLSII 251

Query: 216 ARILWAS 222
             + W S
Sbjct: 252 GWVFWWS 258


>gi|325927202|ref|ZP_08188463.1| SOS-response transcriptional repressor, LexA [Xanthomonas perforans
           91-118]
 gi|325542430|gb|EGD13911.1| SOS-response transcriptional repressor, LexA [Xanthomonas perforans
           91-118]
          Length = 213

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + +AR  G       +               E++    
Sbjct: 6   TQQAILALIAERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEHAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  T                      +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGQGAQTRTAPVSEAARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|296159090|ref|ZP_06841917.1| Peptidase S24/S26A/S26B, conserved region [Burkholderia sp. Ch1-1]
 gi|295890651|gb|EFG70442.1| Peptidase S24/S26A/S26B, conserved region [Burkholderia sp. Ch1-1]
          Length = 232

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 24/220 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           W+ I          P+ LA+K G    +    K  G     R         I      +I
Sbjct: 8   WDRIASRLSASGRRPAWLAKKLGTGTNTITNWKTRGGAPLAR------ARDIAEVLGCSI 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---------GNKWNTVGV 120
            +L+    ++  T  + E            +G       +P              +   +
Sbjct: 62  DELMADEATNQLTKSEVEAYNAPHSGDNFTAGPDIKPRFYPEISWVQAGMWTEIADNFVL 121

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIK 174
            +    +     +  +    +    SM       P +  G +L +        G  ++++
Sbjct: 122 ADDARQYQCHIDLGDKGFVLRVDGVSMTAPSGVFPTFPPGMLLFVRPNEDAIPGKFVIVR 181

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT--VEMSDI 212
                   K L+   G  + L +LN  +P     V+  D+
Sbjct: 182 RNGNTATFKKLVQIEGE-LYLEALNQDWPHRYMRVQKDDV 220


>gi|294626630|ref|ZP_06705227.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599050|gb|EFF43190.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 213

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + +AR  G       +               E++    
Sbjct: 6   TQQAILALITERIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEHAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  T                      +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGQGAQTRTAPVSEAARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|150017419|ref|YP_001309673.1| LexA repressor [Clostridium beijerinckii NCIMB 8052]
 gi|149903884|gb|ABR34717.1| SOS-response transcriptional repressor, LexA [Clostridium
           beijerinckii NCIMB 8052]
          Length = 201

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 59/221 (26%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
              +I+E +    E     PS   +     L  TS      KR   +G   R PS     
Sbjct: 7   KQSEIYEFLKSYTESKGYPPSVREICEAVSLRSTSTVHGHLKRLEKKGMIKRDPSKPRAL 66

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I   +      +                                   +  T N  +T  
Sbjct: 67  EIAELSMPKKEMINIPIIGKITAGLP----------------------ILATENIEDTFT 104

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P     H+       +    +    SM+    R  D+ I+ SA     GD ++      
Sbjct: 105 LPLDFIKHDR------ELFMLRVSGESMVNAGIRDNDLAIIESAQTAINGDIVVALI-ED 157

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K     +   I L   N       V   D   + +++
Sbjct: 158 SATIKRFFKEKD-HIRLQPENDAMDPIIV--DDCMILGKLV 195


>gi|169796566|ref|YP_001714359.1| putative transcriptional regulator; putative phage-related protein
           [Acinetobacter baumannii AYE]
 gi|213156321|ref|YP_002318741.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB0057]
 gi|215484026|ref|YP_002326251.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Acinetobacter baumannii AB307-0294]
 gi|239503695|ref|ZP_04663005.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Acinetobacter baumannii AB900]
 gi|301347669|ref|ZP_07228410.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Acinetobacter baumannii AB056]
 gi|301513475|ref|ZP_07238712.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Acinetobacter baumannii AB058]
 gi|301597612|ref|ZP_07242620.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Acinetobacter baumannii AB059]
 gi|332854621|ref|ZP_08435443.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332867717|ref|ZP_08437806.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
 gi|169149493|emb|CAM87381.1| putative transcriptional regulator; putative phage-related protein
           [Acinetobacter baumannii AYE]
 gi|193076921|gb|ABO11654.2| Peptidase S24 S26A and S26B [Acinetobacter baumannii ATCC 17978]
 gi|213055481|gb|ACJ40383.1| peptidase S24 S26A and S26B [Acinetobacter baumannii AB0057]
 gi|213988866|gb|ACJ59165.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Acinetobacter baumannii AB307-0294]
 gi|332727905|gb|EGJ59304.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332733801|gb|EGJ64952.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
          Length = 223

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 56/218 (25%), Gaps = 6/218 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNE 67
           + + +     +   T + +A    +   ++   +          P       +       
Sbjct: 3   LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTT 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRS 125
              +           T           +       F           ++ +   +P   S
Sbjct: 63  GNSEDSFRESDVFSPTVVNNDAADQYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPAS 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                   Q      K +  SM    + GD++ ++ +        +      G+ + K +
Sbjct: 123 FFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMIKQI 182

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
                 S+ L SLN  +    V      + + + R  W
Sbjct: 183 FKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220


>gi|22126831|ref|NP_670254.1| phage repressor protein cI [Yersinia pestis KIM 10]
 gi|45440748|ref|NP_992287.1| putative prophage repressor protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51595612|ref|YP_069803.1| cI prophage repressor protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108806944|ref|YP_650860.1| putative prophage repressor protein [Yersinia pestis Antiqua]
 gi|108812905|ref|YP_648672.1| prophage repressor protein [Yersinia pestis Nepal516]
 gi|145599733|ref|YP_001163809.1| prophage repressor protein [Yersinia pestis Pestoides F]
 gi|149366781|ref|ZP_01888815.1| putative prophage repressor protein [Yersinia pestis CA88-4125]
 gi|153947774|ref|YP_001401715.1| phage repressor protein [Yersinia pseudotuberculosis IP 31758]
 gi|162419046|ref|YP_001605972.1| phage repressor protein [Yersinia pestis Angola]
 gi|165924786|ref|ZP_02220618.1| phage repressor protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936119|ref|ZP_02224688.1| phage repressor protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009972|ref|ZP_02230870.1| phage repressor protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211761|ref|ZP_02237796.1| phage repressor protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400259|ref|ZP_02305772.1| phage repressor protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419734|ref|ZP_02311487.1| phage repressor protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424151|ref|ZP_02315904.1| phage repressor protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468053|ref|ZP_02332757.1| phage repressor protein [Yersinia pestis FV-1]
 gi|170025053|ref|YP_001721558.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186894677|ref|YP_001871789.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928387|ref|YP_002346262.1| putative prophage repressor protein [Yersinia pestis CO92]
 gi|229841180|ref|ZP_04461339.1| putative prophage repressor protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843284|ref|ZP_04463430.1| putative prophage repressor protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229894101|ref|ZP_04509287.1| putative prophage repressor protein [Yersinia pestis Pestoides A]
 gi|229903334|ref|ZP_04518447.1| putative prophage repressor protein [Yersinia pestis Nepal516]
 gi|270487141|ref|ZP_06204215.1| peptidase S24-like domain protein [Yersinia pestis KIM D27]
 gi|294503243|ref|YP_003567305.1| putative prophage repressor protein [Yersinia pestis Z176003]
 gi|21959861|gb|AAM86505.1|AE013897_1 putative phage repressor protein cI [Yersinia pestis KIM 10]
 gi|45435606|gb|AAS61164.1| putative prophage repressor protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588894|emb|CAH20508.1| putative cI prophage repressor protein [Yersinia pseudotuberculosis
           IP 32953]
 gi|108776553|gb|ABG19072.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24
           [Yersinia pestis Nepal516]
 gi|108778857|gb|ABG12915.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24
           [Yersinia pestis Antiqua]
 gi|115346998|emb|CAL19890.1| putative prophage repressor protein [Yersinia pestis CO92]
 gi|145211429|gb|ABP40836.1| prophage repressor protein [Yersinia pestis Pestoides F]
 gi|149291155|gb|EDM41230.1| putative prophage repressor protein [Yersinia pestis CA88-4125]
 gi|152959269|gb|ABS46730.1| phage repressor protein [Yersinia pseudotuberculosis IP 31758]
 gi|162351861|gb|ABX85809.1| phage repressor protein [Yersinia pestis Angola]
 gi|165915733|gb|EDR34341.1| phage repressor protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923846|gb|EDR40978.1| phage repressor protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991368|gb|EDR43669.1| phage repressor protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207532|gb|EDR52012.1| phage repressor protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962475|gb|EDR58496.1| phage repressor protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050208|gb|EDR61616.1| phage repressor protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057000|gb|EDR66763.1| phage repressor protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169751587|gb|ACA69105.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis
           YPIII]
 gi|186697703|gb|ACC88332.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679104|gb|EEO75207.1| putative prophage repressor protein [Yersinia pestis Nepal516]
 gi|229689631|gb|EEO81692.1| putative prophage repressor protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697546|gb|EEO87593.1| putative prophage repressor protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229703986|gb|EEO90999.1| putative prophage repressor protein [Yersinia pestis Pestoides A]
 gi|262361282|gb|ACY58003.1| putative prophage repressor protein [Yersinia pestis D106004]
 gi|262365181|gb|ACY61738.1| putative prophage repressor protein [Yersinia pestis D182038]
 gi|270335645|gb|EFA46422.1| peptidase S24-like domain protein [Yersinia pestis KIM D27]
 gi|294353702|gb|ADE64043.1| putative prophage repressor protein [Yersinia pestis Z176003]
 gi|320015925|gb|ADV99496.1| putative prophage repressor protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 240

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++   + +  +     +   ++   +A + G+  ++ N+             + 
Sbjct: 4   KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGVNPLNIT--NA 61

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            +  K+L     +    L    +    +     +         S +  +        GN 
Sbjct: 62  AAFAKVLNEPISSFSPSLAKELAKMAESLSITTRSGAKDKPAVSVANSYPLISWISAGNW 121

Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167
           +  +    + +I                   +  SM       + +G I++++   +   
Sbjct: 122 YEAIEPYTLRDIEIWPESTKHAHESAFWLSVKGDSMTSPSGISFPEGMIILVDPEKEPMP 181

Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++       +   K L+   G    L  LN  Y +  +  +  + +  ++
Sbjct: 182 GNFVIAKLTDDNEATFKKLVVDAGIKY-LKPLNPAYRLIELNGN-CKILGVVV 232


>gi|157371448|ref|YP_001479437.1| putative phage repressor [Serratia proteamaculans 568]
 gi|157323212|gb|ABV42309.1| putative phage repressor [Serratia proteamaculans 568]
          Length = 248

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 62/248 (25%), Gaps = 31/248 (12%)

Query: 3   SFSHKKIWEAIDRMAE---RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
             + +     +  +     R  +  +  A        + ++      E  +R        
Sbjct: 1   METKEIRRNNLRELMASYARQGVNQNEFALLVESSSPTLSQI---SGEKSSRNLGDNLAR 57

Query: 60  KILAATNETICQLLDLPF--------------SDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
           +I A  N                                K                    
Sbjct: 58  RIEAKLNLPKGWFDVFHEKQLVRPFDNVAAESDFQPARLKPVVWEDTEQDKEEFVEIPLL 117

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILIL 159
              F  G+    +   E  S     Y +             +   +SM P  + GD++ +
Sbjct: 118 DINFSAGDGCYEIVDREEFSLIFRRYYLHKMGVAVNAARIIRISGSSMEPRLQDGDVVGI 177

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDIEW 214
           N+        +         +  KVLI +    + + SLN   Y  + +        +  
Sbjct: 178 NTDDTRIREGKTYAIRHGNLLRVKVLIEQPDGGVTIRSLNREEYQDEHLSYPQRKDQLVV 237

Query: 215 IARILWAS 222
           + R+ W+S
Sbjct: 238 LGRVFWSS 245


>gi|332290413|ref|YP_004421265.1| LexA repressor [Gallibacterium anatis UMN179]
 gi|330433309|gb|AEC18368.1| LexA repressor [Gallibacterium anatis UMN179]
          Length = 206

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 58/198 (29%), Gaps = 14/198 (7%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           +  ++ N              +     K+L  T  T  + L +  ++   T  KE+   L
Sbjct: 1   MSQSAINHYLNGINALNAYIAT--KFAKLLKVTVSTFSERLAIEIAEMAKTIDKEEIALL 58

Query: 93  LYFPPSGSGGFFDSGVFPTGNKW----NTVGVPEIRSPHNGIY------AIQTQDTRHKT 142
                 G     D              + V V          Y                 
Sbjct: 59  ASTKNEGEKIIIDVLNVEASAGNGSVGDLVEVVSRLYYVPEQYYTLFRGINPEGLRVINI 118

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
           +  SM P +  GD++ ++   Q   GD + I      +  K L    G    ++S N  Y
Sbjct: 119 KGDSMAPTFNSGDMIFVDINTQTFEGDGVYIFNYNNSLYVKRLQR-AGEKFLVLSDNPTY 177

Query: 203 PVDTV-EMSDIEWIARIL 219
               + + S +    +++
Sbjct: 178 REWEINDESQLFIQGKVI 195


>gi|255319235|ref|ZP_05360452.1| phage repressor [Acinetobacter radioresistens SK82]
 gi|255303628|gb|EET82828.1| phage repressor [Acinetobacter radioresistens SK82]
          Length = 247

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 16/207 (7%)

Query: 22  LTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80
           +T   ++   G +   +F+              + +++ K+         ++     +  
Sbjct: 35  VTQEDVSDACGWNTQGAFSAYLNGRTP-----LNLDALIKLSNYFGVPANEISPELAAGL 89

Query: 81  RTTEKKEKEIPLLYFPPSGSGG---FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
            +   +  +        +   G            GN    + +P   +       +    
Sbjct: 90  ESALVEITDYADNNIEIADFDGLKRVPILTYVQAGNWREAIQMPSD-NFIFVSVDVSPNS 148

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-----RGRS 192
                   SMLP +R GD++I+++ ++    D + +      I  K   SR         
Sbjct: 149 FGAYVVGDSMLPDFRDGDLIIIDTQVKPQPTDFV-MAEDPEGITFKKYRSRGINEEGKEV 207

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
            DL+ LN  +P+   + S +E I  ++
Sbjct: 208 FDLVPLNPDFPIIRSDRSRVEIIGTVV 234


>gi|315930676|gb|EFV09696.1| peptidase S24-like family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 222

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 69/222 (31%), Gaps = 22/222 (9%)

Query: 1   MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     + I +  D +A     +L    +A++ G+ P +FN  K               I
Sbjct: 14  MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L   N +I           +   + + +I  LY   +  GG         G   + +
Sbjct: 66  LNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 116

Query: 119 GVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E I       +    +         SM PL + G I +++           +     
Sbjct: 117 DCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 176 DGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 216


>gi|313116334|gb|ADR32142.1| phage repressor protein, putative [Campylobacter jejuni]
          Length = 222

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 69/222 (31%), Gaps = 22/222 (9%)

Query: 1   MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     + I +  D +A     +L    +A++ G+ P +FN  K               I
Sbjct: 14  MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L   N +I           +   + + +I  LY   +  GG         G   + +
Sbjct: 66  LNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 116

Query: 119 GVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E I       +    +         SM PL + G I +++           +     
Sbjct: 117 DCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 176 DGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 216


>gi|312795579|ref|YP_004028501.1| hypothetical protein RBRH_01118 [Burkholderia rhizoxinica HKI 454]
 gi|312167354|emb|CBW74357.1| unnamed protein product [Burkholderia rhizoxinica HKI 454]
          Length = 135

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            N ++A     +  +    SM P+   GD +++N A   +  D + +    G ++ K L 
Sbjct: 38  ENYLHARPEDLSVLRVHGDSMYPVLHDGDNILINHAFT-SPQDGIYVIRVDGQVLVKRLQ 96

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD------IEWIARIL 219
              G  + ++S N  YP   V + D         I R++
Sbjct: 97  RLHGPFLRVISANPDYPPYEVPIEDANDQRGFAVIGRVV 135


>gi|260844977|ref|YP_003222755.1| putative phage repressor protein CI [Escherichia coli O103:H2 str.
           12009]
 gi|257760124|dbj|BAI31621.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str.
           12009]
          Length = 239

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 71/225 (31%), Gaps = 16/225 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++ +  D   ++ +L+    A   G     + ++     I       +TE+  K  A  
Sbjct: 16  ERLRKIWDEKRKQLSLSQEKAADILGFKTQGAVSQLLNAKI-----ALNTENTLKFAALL 70

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIR 124
                ++        R+            F                    + +    +  
Sbjct: 71  QVPAEEINPDLSDLLRSIRTHTPGNRRNLFEKYYEYPLLSCVQAGAFTMDDFSYTQKDAI 130

Query: 125 SPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +       +    + +  SM       P + +G +++++   ++  GD  + +    
Sbjct: 131 KWISTTTKASDRSFWLEVKGHSMTAPQGGKPSFPEGMLILVDPEREIEDGDFCVARMNGD 190

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +   K  I   G++  L  LN  + +      + +++ +++  SQ
Sbjct: 191 EFTFKRFIRESGKAY-LEPLNPRFEMIECN-ENCQFVGKVI-KSQ 232


>gi|240124036|ref|ZP_04736992.1| putative transcriptional regulator, repressor [Neisseria
           gonorrhoeae PID332]
 gi|268682662|ref|ZP_06149524.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|268622946|gb|EEZ55346.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
          Length = 228

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 23/213 (10%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F +    G       P +E++ KI      +I  LL    +     
Sbjct: 18  QAKIASDIEMTIAGFGRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIY 131
             K+                            G            T+        +  + 
Sbjct: 73  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVGHEKPVFTMAFRRHWIEN-YVT 131

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
                 +    +  SM  +   GD +++N        D L +     +++ K L    G 
Sbjct: 132 RDTKNLSVISVKGDSMEGVLNDGDSILVNHGENT-PRDGLYVLRINENLLVKRLQIVPGG 190

Query: 192 SIDLMSLNCCYPVDTVEM----SDIEWIARILW 220
            I+++S N  YP   + +     D+E I R+ W
Sbjct: 191 IINVISANEAYPAFEINLNDLTDDVEIIGRVEW 223


>gi|326773661|ref|ZP_08232944.1| repressor LexA [Actinomyces viscosus C505]
 gi|326636891|gb|EGE37794.1| repressor LexA [Actinomyces viscosus C505]
          Length = 249

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 22/223 (9%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTESIFK 60
           ++EA+      H   PS   +  + GL   S      +K +R G+  R    P    +  
Sbjct: 31  VYEAVRAAIATHGYPPSLREIGEQVGLTSPSSVKHQLDKLERLGLVRRDPNRPRAMEVVC 90

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             +A +           +   +      E       P        + +       + + +
Sbjct: 91  ADSAPSGRAATPGSAHVTSLDSPSVPGVEDGEAVAVPLVGRIAAGAPILAEQEVTDVMAL 150

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P   +        + +    +    SM       GD +++ S      G+ +       D
Sbjct: 151 PRRLTG-------EGELFMLEVHGDSMIEAAICDGDWVVVRSQPDAANGEIVAAMIEDVD 203

Query: 180 ---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 KVL  R      L+  N  Y     +      + +++
Sbjct: 204 GASATVKVLSRR-DGHQWLLPRNSSYAPI--DGDQATIMGKVV 243


>gi|308389235|gb|ADO31555.1| putative transcriptional regulator [Neisseria meningitidis
           alpha710]
 gi|325130205|gb|EGC52978.1| hypothetical protein NMBOX9930304_1032 [Neisseria meningitidis
           OX99.30304]
 gi|325136373|gb|EGC58981.1| hypothetical protein NMBM0579_1115 [Neisseria meningitidis M0579]
          Length = 239

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 64/229 (27%), Gaps = 35/229 (15%)

Query: 20  HNLTPSGLARKAGLDPTSFNK-SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
           H   PS +  K  +  + FN+  K   I      P+ + + KI   T   +  LL     
Sbjct: 14  HGAKPSDIYNKIEMSASGFNRVWKEGAI------PTADYLVKIQEVTGCDLNWLLTGKGL 67

Query: 79  DGRTTEKKEKEIPLLYF-------------PPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 + E                            F           +      E   
Sbjct: 68  PYLDKARPENAGAFSVSRNSDGITDTMGNPVDLSEFVFVPRYNVAAAAGYGAPVFGEEPL 127

Query: 126 P---------HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                      N +     + +    +  SM  +   GD +++N A   +  D L +   
Sbjct: 128 FCLAFRKYWIDNYVTKQPEKLSVITVKGDSMEGVLNHGDSILINHAET-DPRDGLYVLRI 186

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILWA 221
             D+  K +       + + S N  Y    +++     DI  I R+ W 
Sbjct: 187 GNDLFVKRVQRIP-GKLLVTSENPRYAPFEIDLSNAQDDIAIIGRVEWY 234


>gi|237748145|ref|ZP_04578625.1| repressor protein cI [Oxalobacter formigenes OXCC13]
 gi|229379507|gb|EEO29598.1| repressor protein cI [Oxalobacter formigenes OXCC13]
          Length = 217

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 70/219 (31%), Gaps = 36/219 (16%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET------------------ 68
           +A K G+  T+  + +R  +       + E++  I  A +                    
Sbjct: 1   MANKTGIGQTTIGRIRRGEVNA-----TAENLRAIADAFDVPVGYLYGEETVHGIRVDMD 55

Query: 69  -------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                    + +            K  ++PL+ +  +G+         P G+    +  P
Sbjct: 56  IRQPSPAPKRTMGTTRGYFGPPPDKIGQLPLISWVQAGNWTEAIDNFAP-GDAEEWIPCP 114

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-I 180
              S H  +  +  +   +   D S    +  GD + ++   +   G  ++++       
Sbjct: 115 FKHSQHAFVLKVVGKSMYNPGNDKS----FNDGDYIAVDPCREARNGSMVVVRLDDDHTA 170

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L+        LM+LN  +P   + +     I  ++
Sbjct: 171 TFKQLLVEPNGERMLMALNPSWPNRIIHIHASATICGVV 209


>gi|192361112|ref|YP_001982175.1| LexA repressor [Cellvibrio japonicus Ueda107]
 gi|229621197|sp|B3PEX1|LEXA_CELJU RecName: Full=LexA repressor
 gi|190687277|gb|ACE84955.1| LexA repressor [Cellvibrio japonicus Ueda107]
          Length = 200

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 39/217 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++ + I +  E     P  + +AR  G    +                + E
Sbjct: 1   MYNLTSRQEQVLQLIKQYTEETGYPPTRAEIARILGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                   ++                 G    G    GN   
Sbjct: 45  EHIKALARKGAIEIMPGASRGIRLTESQS----------------GIPIVGRVAAGNPIL 88

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E        +   + D   +    SM       GD+L ++   QV  G  ++ + 
Sbjct: 89  AQEHIEDYCNIPNSFFSPSADYFLRVHGMSMKDAGILDGDLLAVHRTDQVRNGQIVVARI 148

Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSD 211
              ++  K    +  +  ++L   N  + V  V+M D
Sbjct: 149 -GEEVTVKRFKRQGNQAQVELWPENPDFKVIHVDMRD 184


>gi|120611227|ref|YP_970905.1| LexA repressor [Acidovorax citrulli AAC00-1]
 gi|326317456|ref|YP_004235128.1| transcriptional repressor, LexA family [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|171769179|sp|A1TQ93|LEXA_ACIAC RecName: Full=LexA repressor
 gi|120589691|gb|ABM33131.1| SOS-response transcriptional repressor, LexA [Acidovorax citrulli
           AAC00-1]
 gi|323374292|gb|ADX46561.1| transcriptional repressor, LexA family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 224

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 14/213 (6%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              +   ++I + I     R    P+     A     S N ++                 
Sbjct: 5   PKLTARQQQILDLIQTAIARTGAPPTRAEIAAEFGFKSANAAEEHLQA---------LAR 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K +        + + L     R+          L  P          G    G+      
Sbjct: 56  KGVIELVSGTSRGIRLRGEAVRSINAARGTQFHLPIPGISQLMLPLIGRVAAGSPILAEE 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             +      G       D   K +  SM       GD+L + S  +   G  ++ +    
Sbjct: 116 HVDQTYSVEGSLFQHKPDYLLKVRGMSMRDAGIMDGDLLAVQSTREARNGQIIVAR-LGD 174

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           ++  K L  R   +I+L+  N  YP+ TV+  +
Sbjct: 175 EVTVKRL-RRTAGAIELLPENPDYPIITVQPGE 206


>gi|319898921|ref|YP_004159014.1| SOS response regulator lexA protein [Bartonella clarridgeiae 73]
 gi|319402885|emb|CBI76436.1| SOS response regulator lexA protein [Bartonella clarridgeiae 73]
          Length = 221

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 14/216 (6%)

Query: 17  AERHNLTPSGLARKAGL---DPTSFNKS-----KRFGIEGRN-RWPSTESIF---KILAA 64
            +   + PS    K  L     +S ++      +R  I     R  + E +    K+   
Sbjct: 1   MKEIGVPPSFDEMKNALELASKSSIHRLVTALEERGFIRRLPNRARAVEVVRLPDKVTFN 60

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
            +        +   + R   K    + +       +      G   +G   + +      
Sbjct: 61  LSPARKIFPSVIQKNKRKISKNSSNVNISIIEDKKNITIPIMGRIASGVPISAIQQQTNT 120

Query: 125 SPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                      +    + +  SM        D +I+        G+ ++      +   K
Sbjct: 121 LSLPSSMIGLGEHYALEVRGDSMIEAGILDRDTVIIKCQNVAMPGEIIVALIDREEATLK 180

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +   SI+L + N  Y         ++   +++
Sbjct: 181 RYRRKGA-SIELEAANPHYETRIYGPERVKIQGKLV 215


>gi|163857094|ref|YP_001631392.1| LexA repressor [Bordetella petrii DSM 12804]
 gi|229621207|sp|A9IR25|LEXA_BORPD RecName: Full=LexA repressor
 gi|163260822|emb|CAP43124.1| LexA repressor [Bordetella petrii]
          Length = 224

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 14/209 (6%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I + I     R    P  + +AR  G        +    ++   R  + E       
Sbjct: 9   QQEILDLIRLTVSRTGFPPTRAEIARALGFRSP---NAAEDHLKALARKGAIELTA---- 61

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               +    L           +             G       G    G+        E 
Sbjct: 62  --GASRGIRLKDAGETIPPGPETAASALAGMADAVGRLLLPLVGRVAAGSPILAAEHVER 119

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +     QT D   K +  SM      +GD+L +  A +   G  ++ +    ++  
Sbjct: 120 EVGVDVDLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR-LGDEVTV 178

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L       I+L+  N  +    V+ + 
Sbjct: 179 KRLQRH-QGRIELLPENPDFSPIVVDGTQ 206


>gi|260062823|ref|YP_003195903.1| hypothetical protein RB2501_14574 [Robiginitalea biformata
           HTCC2501]
 gi|88784391|gb|EAR15561.1| hypothetical protein RB2501_14574 [Robiginitalea biformata
           HTCC2501]
          Length = 251

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 57/212 (26%), Gaps = 18/212 (8%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
             +   T +  A   G+  T+    +R   +      S   + ++L         L    
Sbjct: 14  RRQLGYTQAEFAELLGIPSTT-ADIERGRTK-----LSGMVVSELLRQFKINPLWLFGSS 67

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-- 134
                          ++    S                +               + +   
Sbjct: 68  ERQYLEPASVNVMPKVV-TVDSADRENMVLVNAKAAAGYPQNIQDSSWFRRLPAFDLPIP 126

Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                     + +  SMLP  R GD ++   ++   +V+     +       ++ K +  
Sbjct: 127 QFRNATYRGFQVEGDSMLPNLRPGDWVLARAVSDWKEVSPNRIYV-IVLEDAVLVKKVEK 185

Query: 188 RRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             G     L+SLN  Y    +  S ++ +  +
Sbjct: 186 LPGTGRFRLISLNESYAPYEISESQLQEVWEV 217


>gi|260558030|ref|ZP_05830242.1| peptidase S24 S26A and S26B [Acinetobacter baumannii ATCC 19606]
 gi|260408540|gb|EEX01846.1| peptidase S24 S26A and S26B [Acinetobacter baumannii ATCC 19606]
          Length = 223

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 57/225 (25%), Gaps = 20/225 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +     +   T + +A    +   ++   +        +   +  +  I       
Sbjct: 3   LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESG------KNLKSAFLPLIAQFLGVD 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGV------- 120
              L      D            +                 F  G    ++         
Sbjct: 57  AYWLTTGNSEDSFRESDVFSPTVVSNDAADQYVWIEVVEANFSCGTG-ESIEFHFDAING 115

Query: 121 --PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             P   S        Q      K +  SM    + GD++ ++ +        +      G
Sbjct: 116 KIPFPASFFKEKRVAQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAG 175

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
           + + K +      S+ L SLN  +    V      + + + R  W
Sbjct: 176 EGMIKQIFKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220


>gi|212637508|ref|YP_002314033.1| LexA repressor [Shewanella piezotolerans WP3]
 gi|226736105|sp|B8CUX0|LEXA_SHEPW RecName: Full=LexA repressor
 gi|212558992|gb|ACJ31446.1| Peptidase S24, LexA repressor [Shewanella piezotolerans WP3]
          Length = 206

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +AR+ G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNISDTGMPPTRAEIARRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E +E E+ L                   G    
Sbjct: 45  EHLKALAKKGCIEIIPGTSRGIRLTQEEPEEVELGLPLIGQ-----------VAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   + +  SM  +   +GD+L ++ + Q   G  ++ + 
Sbjct: 94  AQEHVEQHYKVDPAMFRPSADFLLRVRGDSMKDIGILEGDLLAVHKSQQARNGQVVVAR- 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L + N  Y    V+++
Sbjct: 153 VEDDVTVKRFEKK-GNKVFLHAENEEYSPIEVDLA 186


>gi|225025512|ref|ZP_03714704.1| hypothetical protein EIKCOROL_02412 [Eikenella corrodens ATCC
           23834]
 gi|224941796|gb|EEG23005.1| hypothetical protein EIKCOROL_02412 [Eikenella corrodens ATCC
           23834]
          Length = 251

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 69/236 (29%), Gaps = 45/236 (19%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
           P+ +AR      +   +        ++  P  E++  I          L+          
Sbjct: 17  PAQIARDLNWSISGVLRIFE-----KDTIPKAETLVSIQKLKGCDWNWLMTGEGVPFPKE 71

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP----------------- 126
                   L       +  +    +       +T+G P   S                  
Sbjct: 72  AAAGGNQELHEPVAGYNAKWIAQSIQTAPGVRDTLGNPVDLSEFVFIPRYNVRASAGNGF 131

Query: 127 ------------------HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
                              + + A     +  K +  SM P+    D +++N A +   G
Sbjct: 132 PVGNEEPLFPMAFRRFWIEHYLNADPKDLSVIKVRGDSMEPVLCNNDNILVNHAKR-KPG 190

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220
           + L +    G++V K      G  + L S N  Y    +++    +D+E + R+ W
Sbjct: 191 NGLFVVRIGGELVVKYTQIMPGSKLLLKSANEIYEPFELDVAEPDADVEIVGRVEW 246


>gi|194432399|ref|ZP_03064686.1| repressor protein C2 [Shigella dysenteriae 1012]
 gi|194419286|gb|EDX35368.1| repressor protein C2 [Shigella dysenteriae 1012]
 gi|320181565|gb|EFW56482.1| repressor protein CI [Shigella boydii ATCC 9905]
 gi|332093710|gb|EGI98766.1| repressor protein CI [Shigella dysenteriae 155-74]
 gi|332093844|gb|EGI98898.1| repressor protein CI [Shigella boydii 5216-82]
          Length = 239

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 72/225 (32%), Gaps = 16/225 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++ +  D   ++ +L+    A   G     + ++     I       +TE+  K  A  
Sbjct: 16  ERLRKIWDEKRKQLSLSQEKAADILGFKTQGAVSQLLNAKI-----ALNTENTLKFAALL 70

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIR 124
                ++        R+            F                 +  + +    +  
Sbjct: 71  QVPAEEINPDLSDLLRSIRTHTPGNRRNLFEKYYEYPLLSCVQAGAFSMDDFSYTAKDAI 130

Query: 125 SPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +       +    + +  SM       P + +G +++++   ++  GD  + +    
Sbjct: 131 KWISTTTKASDRSFWLEVKGHSMTAPQGGKPSFPEGMLILVDPEREIEDGDFCVARMNGD 190

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +   K  I   G++  L  LN  + +      + +++ +++  SQ
Sbjct: 191 EFTFKRFIRESGKAY-LEPLNPRFDMIECN-ENCQFVGKVI-KSQ 232


>gi|114320255|ref|YP_741938.1| SOS-response transcriptional repressor, LexA [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311965|sp|Q0A9N9|LEXA_ALHEH RecName: Full=LexA repressor
 gi|114226649|gb|ABI56448.1| SOS-response transcriptional repressor, LexA [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 208

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 60/209 (28%), Gaps = 32/209 (15%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +++ + I     R    P  + + R  G              E   R  + +   ++  
Sbjct: 10  QQQVLDQIRGHIRRTGYPPTRAEICRALGFRSP-------NAAEAHLRALARKGAIEL-- 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                             + S G    G    G+        + 
Sbjct: 61  ------------------RPGTSRGIHLPEEAAANDSDGLPVVGRVAAGSPILAEAHIDR 102

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +        D   + +  SM       GD+L+++   +   G  ++++    ++  
Sbjct: 103 HYRVDTHLFSPRPDYLLRVRGMSMRDAGILDGDLLVVHRTHEARNGQIVVMR-LHDEVTV 161

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L  + G  + L++ N  YP   V+++ 
Sbjct: 162 KRL-EQHGSRLRLLAENPDYPTIEVDLTR 189


>gi|116013510|dbj|BAF34577.1| SOS repair repressor [Deinococcus radiodurans]
          Length = 248

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 63/217 (29%), Gaps = 25/217 (11%)

Query: 13  IDRMAERHNLT-PSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAATNETI 69
           I     + NL+     A  AG+  TS +   R      G    PS +++ K+  A ++  
Sbjct: 38  IAERMRQLNLSTVKDFADYAGIGRTSIHDLVRGRTTTSGTWTKPSFDTLTKLAVALDKPT 97

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +LL L   +            +  +                G     +           
Sbjct: 98  HELLYLIDPEAPGANLMFDVQQVPVYIAGQ-----------VGAGPQQLWESSDVVYVER 146

Query: 130 IYAIQTQDTRHKTQDTSML---PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +A             SM         GD++I++  +       ++ + +    V K L 
Sbjct: 147 QFAENRDLIAFTVVGDSMAGGRHPIHDGDVVIVDQRVGGEVNFPVVARLKDDGHVVKRLR 206

Query: 187 SRRGRSIDLMSLNCCY---PVDTVEMSDIEW-IARIL 219
                 I L S N  +       +    I   + R++
Sbjct: 207 ---PGGI-LDSANPDFVDPDTSIIAPDRIAHLVGRVV 239


>gi|283954007|ref|ZP_06371533.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794490|gb|EFC33233.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 222

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 24/223 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M     +++ E +  +        L    +A++ G++P +FN  K               
Sbjct: 14  MQM---QEVIEKLKDILASEGKRELKTKDIAKELGINPDTFNSMKFRNPIPYP------Q 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           I   L   N +I           +   + + +I   Y   +  GG         G   + 
Sbjct: 65  ILNFLQERNISINYFFYGSSPKEQLESENKYKILKFYKTNASLGG---------GGINDL 115

Query: 118 VGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           +   + I       +              SM PL + G I I++           +    
Sbjct: 116 IDYSKLIIDEKLLSFFGSKNCEFITCYGESMEPLIKDGSICIVDRNKTFKDKSICV-INT 174

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 175 RDGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 216


>gi|254240157|ref|ZP_04933479.1| hypothetical protein PA2G_00798 [Pseudomonas aeruginosa 2192]
 gi|126193535|gb|EAZ57598.1| hypothetical protein PA2G_00798 [Pseudomonas aeruginosa 2192]
          Length = 265

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 56/247 (22%), Gaps = 37/247 (14%)

Query: 8   KIWEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   AI         +T   +A   GL  T+ + +  +         + E+         
Sbjct: 17  QALNAIYKAKKRELGITQEKIA-LEGLGATTQSAASHYLTGKN--ALNAEAAAVFARYLE 73

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------- 119
             +         +        +  P+                 P       +        
Sbjct: 74  IQVRDFSPRLAEEIERMATTVRPKPVANTRGDLEPIPVWDDGDPLDANEVEIPYFNEIQI 133

Query: 120 ------------------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
                              P      +G+               SM PL   G I+ ++ 
Sbjct: 134 AAGDGRLPDLEQAKRKIRFPRTVLRESGV--DPKNSVCVNVTGNSMEPLIADGAIIGVDL 191

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE-----WI 215
           ++       +        +  K +    G  I L S N   YP +      +       I
Sbjct: 192 SVSTITDGEIYALKHDDMLRVKFVYRLPGGGIRLRSFNRDEYPDEEYTRDQMRESNLSII 251

Query: 216 ARILWAS 222
             + W S
Sbjct: 252 GWVFWWS 258


>gi|260550022|ref|ZP_05824237.1| peptidase S24 S26A and S26B [Acinetobacter sp. RUH2624]
 gi|260407014|gb|EEX00492.1| peptidase S24 S26A and S26B [Acinetobacter sp. RUH2624]
          Length = 223

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 57/218 (26%), Gaps = 6/218 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNE 67
           + + +     +   T + +A    +   ++   +          P       +       
Sbjct: 3   LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTT 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRS 125
              +           T      +    +       F           ++ +   +P   S
Sbjct: 63  GNTEDSFRESDVFSPTVVSSDVVDQYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPAS 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                   Q      K +  SM    + GD++ ++ +        +      G+ + K +
Sbjct: 123 FFKEKRVPQECMRIIKAKGDSMTDYIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMIKQI 182

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
                 S+ L SLN  +    V      + + + R  W
Sbjct: 183 FKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220


>gi|260424652|ref|ZP_05732822.2| transcriptional repressor LexA [Dialister invisus DSM 15470]
 gi|260402702|gb|EEW96249.1| transcriptional repressor LexA [Dialister invisus DSM 15470]
          Length = 149

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 10/115 (8%)

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
             VF          +P             T       +  SM+    ++GD LI+     
Sbjct: 38  DPVFADEQIETVFPLPAELVGS------DTNCFMLVVRGDSMINAGIQEGDYLIVAEQET 91

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              GD ++      D   K         I L   N  Y        D++   +++
Sbjct: 92  ARNGDIVVALVGNDDATVKRFFR-EADHIRLQPENDDYEPII--SRDVKIRGKVI 143


>gi|329947100|ref|ZP_08294476.1| repressor LexA [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526277|gb|EGF53294.1| repressor LexA [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 239

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 15/220 (6%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESIFKILA 63
           ++EA+      H   PS   + ++ GL   S  K +   +E      R P+     + + 
Sbjct: 20  VYEAVCEAIAAHGYPPSLREIGKQVGLTSPSSVKHQLDKLEHLGLVRRNPNRP---RAME 76

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                             ++    +   +L      +      G    G           
Sbjct: 77  VIGAHHDAGPRGDVPVDVSSAVSLEAPRVLGIEDGDAVAVPLVGRIAAGAPILAEQDITD 136

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL---LIKPRTGD 179
                     Q +    +    SM       GD +++ S      G+ +   +       
Sbjct: 137 VMALPRRLTGQGELFMLEVHGDSMIEAAICDGDWVVVRSQPDAANGEIVAAMVEDVDGAS 196

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              KVL  R      L+  N  Y     +      + +++
Sbjct: 197 ATVKVLSRR-DGHQWLLPRNSSYAPI--DGDRATIMGKVV 233


>gi|237743762|ref|ZP_04574243.1| LexA repressor [Fusobacterium sp. 7_1]
 gi|229432793|gb|EEO43005.1| LexA repressor [Fusobacterium sp. 7_1]
          Length = 235

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 10/218 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+I   +    E    + + +  K  +D +  ++ +     G+ R  +   + K+  A  
Sbjct: 14  KEIGNFLKNRREELGYSTNQMLMKTDIDKSDISRIEN----GKKRKLNPIYLKKLAKALK 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I +L  +        E   K+        +     +             + + +    
Sbjct: 70  LDIIELFKMVGFLDEDIEIHTKKESFE-IKNAMRKIIYLPVYGKASAGNGYLNLEQEIYK 128

Query: 127 HNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
              +           K +  SM P   +G+  ++N        +++ +     +   K +
Sbjct: 129 MPILDEDFPDGCFFVKIEGNSMEPTIIEGEFALVNPNDIEYEKNKIYVVTYDDESFIKRM 188

Query: 186 ISRRG-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
           +       + L S N  Y    +++     ++   R++
Sbjct: 189 VVDEKTGIVILKSDNKEYDDILIDIEKQEYLKINGRVI 226


>gi|195939798|ref|ZP_03085180.1| putative repressor protein [Escherichia coli O157:H7 str. EC4024]
 gi|261226405|ref|ZP_05940686.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257983|ref|ZP_05950516.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK966]
          Length = 214

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 15/209 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+ +   LT   L + +G+   +    ++   E     P ++++ K+  A  
Sbjct: 2   ESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T   LL    S   +  +      + Y     +  F       T    + +        
Sbjct: 57  TTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITTFFDVEE 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181
            +   ++          + S  P    G  +IL        G  + +           + 
Sbjct: 117 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLKNEPSMT 172

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            K L+   G+ + L  LN  Y    +   
Sbjct: 173 IKKLV-IDGKLVYLSPLNPRYQSSLLTPE 200


>gi|15832020|ref|NP_310793.1| repressor protein [Escherichia coli O157:H7 str. Sakai]
 gi|254793674|ref|YP_003078511.1| putative repressor protein of prophage CP-933U [Escherichia coli
           O157:H7 str. TW14359]
 gi|13362234|dbj|BAB36189.1| putative repressor protein [Escherichia coli O157:H7 str. Sakai]
 gi|254593074|gb|ACT72435.1| putative repressor protein of prophage CP-933U [Escherichia coli
           O157:H7 str. TW14359]
          Length = 215

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 15/209 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+ +   LT   L + +G+   +    ++   E     P ++++ K+  A  
Sbjct: 3   ESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T   LL    S   +  +      + Y     +  F       T    + +        
Sbjct: 58  TTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITTFFDVEE 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181
            +   ++          + S  P    G  +IL        G  + +           + 
Sbjct: 118 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLKNEPSMT 173

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            K L+   G+ + L  LN  Y    +   
Sbjct: 174 IKKLV-IDGKLVYLSPLNPRYQSSLLTPE 201


>gi|329768224|ref|ZP_08259725.1| hypothetical protein HMPREF0428_01422 [Gemella haemolysans M341]
 gi|328837423|gb|EGF87052.1| hypothetical protein HMPREF0428_01422 [Gemella haemolysans M341]
          Length = 214

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 24/205 (11%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG- 80
           ++ S L+++  +  +S +   + G     +      I K+L  +   +    D       
Sbjct: 17  ISQSELSKRTHIGKSSISTYLKGGYI--PKQDKIYLIAKVLDVSESYLMGWTDEKERKQT 74

Query: 81  -RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ--- 136
              +       P++        G         GN                +  + +    
Sbjct: 75  PPPSFNLSDIKPIVKTVKIPLIGVIC-----AGNGIYADE------NLERMLVVDSNTIT 123

Query: 137 -DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV--AKVLISRRGRS 192
            D     +  SM+      GDI           G         G+     K +  + G  
Sbjct: 124 ADYALTVKGDSMIDENILNGDIAFFEKTFNFESGKI-YACIVNGENTGAIKKVHQQ-GNK 181

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIAR 217
           I L S N  Y     ++ D+  + +
Sbjct: 182 IILESANKDYTPQIYDIDDVHIVGK 206


>gi|319947513|ref|ZP_08021745.1| XRE family transcriptional regulator [Streptococcus australis ATCC
           700641]
 gi|319746453|gb|EFV98714.1| XRE family transcriptional regulator [Streptococcus australis ATCC
           700641]
          Length = 227

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 18/228 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  F  KK    +        LT + +     +   +++  +    E  ++  +   + K
Sbjct: 1   MQMFDAKK----LKDRRLELGLTQAQVYESLEISRKTYSSWENGLAEPHDK--NLRRLAK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF--------PPSGSGGFFDSGVFPTG 112
            L+   +         F+    T   +K++ LL            S       S     G
Sbjct: 55  HLSVKEDYFVDKSSALFTYPLLTPPHQKKVDLLASQLLAEQEKVVSLIPYRVLSIDLAAG 114

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +                   IQ           SM P Y  G + ++        G  + 
Sbjct: 115 HGHTFYDNETDYETVYFDQEIQHD-FASWVSGDSMEPSYPNGSVALMKQTGFDYDG-AVY 172

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
                G    K +       + L S+N  Y         + + +  ++
Sbjct: 173 ALMWNGKTYIKKVYREEEG-LRLESINPAYDDLFAPYEDEPKIVGIVV 219


>gi|15802455|ref|NP_288481.1| putative repressor protein of prophage CP-933U [Escherichia coli
           O157:H7 EDL933]
 gi|12516142|gb|AAG57035.1|AE005422_10 putative repressor protein of prophage CP-933U [Escherichia coli
           O157:H7 str. EDL933]
          Length = 196

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 62/202 (30%), Gaps = 15/202 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+ +   LT   L + +G+   +    ++   E     P ++++ K+  A  
Sbjct: 3   ESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T   LL    S   +  +      + Y     +  F       T    + +        
Sbjct: 58  TTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITTFFDVEE 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181
            +   ++          + S  P    G  +IL        G  + +           + 
Sbjct: 118 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLKNEPSMT 173

Query: 182 AKVLISRRGRSIDLMSLNCCYP 203
            K L+   G+ + L  LN  Y 
Sbjct: 174 IKKLV-IDGKLVYLSPLNPRYQ 194


>gi|332703667|ref|ZP_08423755.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553816|gb|EGJ50860.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 251

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 61/237 (25%), Gaps = 30/237 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++ +   +     A    +   +         +     PS + + K +        
Sbjct: 19  KRLQQVIDNLGVEKKAFALAGDIKQPTLTAYLNAQSQ-----PSQDVVAKWILVYGINAN 73

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYF-----------------PPSGSGGFFDSGVFPTGN 113
            LL       R    +    P                     P     G         G 
Sbjct: 74  WLLTGEGPMFREERAEAASKPAYQIAPFGPDGQTRRTQVVRGPDDQELGAIIEVHAEAGP 133

Query: 114 KWN---TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGD 169
                     P         YA          + ++M PL  +G ++ +N    +   GD
Sbjct: 134 GQVKTRWEPDPIGTVCIPPEYAKPG-LFGLHIKGSAMEPLINRGALVGVNAEDRKFVSGD 192

Query: 170 RLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIE--WIARILWASQ 223
              +      +  + L          L S++  +P   + +   E   + R++W  Q
Sbjct: 193 IYAVFIPYEGLTTRRLFLDPDTSVYVLRSIHPDHPDMELPVDKSENLIVGRVVWVMQ 249


>gi|300825209|ref|ZP_07105298.1| helix-turn-helix protein [Escherichia coli MS 119-7]
 gi|300522328|gb|EFK43397.1| helix-turn-helix protein [Escherichia coli MS 119-7]
 gi|323968639|gb|EGB64044.1| helix-turn-helix protein [Escherichia coli M863]
          Length = 216

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 18/215 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + +   + R+ +   LT   L + +G+   +    ++   E     P ++++ K
Sbjct: 1   MMM---ESLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSK 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   T   LL    S   T  +      + Y     +  F       T    + +  
Sbjct: 53  LAQALGTTESYLLYGVSSTEPTLVQNNSGTQIPYLSWGEAISFLILEGEKTMGNADRITT 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----P 175
                  +   ++          + S  P    G  +I+    +   G  + +       
Sbjct: 113 FFDVKEGDFAVSMPDD----TMHNPSGSPSIPVGATVIMRPREKYKNGSIVAVIVPDPLT 168

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
               +  K L+   G+ + L  LN  Y    +   
Sbjct: 169 NEPSMTIKKLV-IDGKLVYLSPLNPRYQSSLLTPE 202


>gi|229589083|ref|YP_002871202.1| LexA repressor [Pseudomonas fluorescens SBW25]
 gi|312959633|ref|ZP_07774150.1| LexA repressor [Pseudomonas fluorescens WH6]
 gi|229360949|emb|CAY47809.1| LexA repressor [Pseudomonas fluorescens SBW25]
 gi|311286350|gb|EFQ64914.1| LexA repressor [Pseudomonas fluorescens WH6]
          Length = 202

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I   I R  + +   P  + +A + G    +                + E
Sbjct: 1   MLKLTPRQAEILAFIKRCLDDNGYPPTRAEIALELGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E K  E  L              G    G    
Sbjct: 45  EHLKALARKGAIEMTPGASRGIRIPGFEAKADESTLPII-----------GRVAAGAPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     N  +     D   +    SM  +    GD+L +++  +   G  ++ + 
Sbjct: 94  AQQHVEESCNINPTFFHPRADYLLRVHGMSMKDVGIFDGDLLAVHTTREARNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  + L++ N  +    V + D
Sbjct: 154 -GDEVTVKRFKR-EGSKVWLLAENPEFAPIEVNLKD 187


>gi|15673253|ref|NP_267427.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|12724246|gb|AAK05369.1|AE006359_7 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|326406810|gb|ADZ63881.1| transcriptional repressor [Lactococcus lactis subsp. lactis CV56]
          Length = 252

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 63/242 (26%), Gaps = 38/242 (15%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------ 63
            + + ++ +   LT S LA K G+   ++   ++     ++  P+ E + K+        
Sbjct: 4   GQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQ-----KSTNPTLEILEKLADIYDLPI 58

Query: 64  --------------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
                               +      + +           K E      Y   S     
Sbjct: 59  QELIKETDNNAEKQLIDNYRSLTGEQQESVINFTDFLIEQNKTEIINLKTYRRSSLDYAI 118

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
            +      G    +               +   D   + +  SM P +    I       
Sbjct: 119 VEDEELSAGFG-QSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLHTG 177

Query: 164 QVNCGDRL-LIKPRTGD--IVAKVLISRRGRSIDLMSLNCC--YPVDTVEMSD-IEWIAR 217
               GD   + +   G+  +  K +         + SLN    Y    +   D    I  
Sbjct: 178 FGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGP 237

Query: 218 IL 219
           ++
Sbjct: 238 VV 239


>gi|254518938|ref|ZP_05130994.1| SOS-response transcriptional repressor [Clostridium sp. 7_2_43FAA]
 gi|226912687|gb|EEH97888.1| SOS-response transcriptional repressor [Clostridium sp. 7_2_43FAA]
          Length = 201

 Score = 80.6 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 60/221 (27%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
              +I+E +    E     PS   +     L  TS      KR   +G   R P+     
Sbjct: 7   KQLEIYEFLKIYTENKGYPPSVREICDAVNLRSTSTVHGHLKRLEKKGLIRRDPTKPRAL 66

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+  +N     L                                   +  T N  +T  
Sbjct: 67  EIMETSNMKKEMLNIPLVGRVTAGTP----------------------ILATENIEDTFP 104

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P     HN       +    K    SM+      GD  I+  A     GD ++      
Sbjct: 105 IPIDYIKHN------EELFMLKVTGNSMINAGIHDGDYAIIEKAPTAKNGDIVVALI-EN 157

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D   K     +   I L   N       V   D   + +++
Sbjct: 158 DATIKRFFKEKD-HIRLQPENDALSPIIV--EDCIILGKLV 195


>gi|171915361|ref|ZP_02930831.1| phage repressor [Verrucomicrobium spinosum DSM 4136]
          Length = 283

 Score = 80.6 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 53/212 (25%), Gaps = 9/212 (4%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESIFKILAATNETICQ 71
            +  E    +   LA+  G         +     G  R       ++        + +  
Sbjct: 64  RKAREAKGWSIKDLAKATGYSIGVLQALEEGNGRGSERQIKKVATALDVPFEDLMQGVEP 123

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                     T               +                W         + H    
Sbjct: 124 GFIDESGLTGTLGASPNVELGPGIKTARYVPLISFAQAGKMGSWEDAAY--EYTGHIAFD 181

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK---PRTGDIVAKVLISR 188
               +      +  SM+P+   GD+ IL  +     G+ ++ +      G ++ KV   +
Sbjct: 182 MTDPKAFGVTIRGDSMVPVINDGDVAILVPSSAPRGGEVVVARLSEEAGGGVMCKVYTPK 241

Query: 189 RGR-SIDLMSLNCC-YPVDTVEMSDIEWIARI 218
                + L S N   +P       D  W+  +
Sbjct: 242 DAGAKVVLTSYNSAVHPPLEFRREDFVWLYPV 273


>gi|325916033|ref|ZP_08178323.1| SOS-response transcriptional repressor, LexA [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537709|gb|EGD09415.1| SOS-response transcriptional repressor, LexA [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 250

 Score = 80.6 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +   I   I    +   +  + + +AR  G       +               E++ +  
Sbjct: 43  TQHAILTLIADRIDADGVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 90

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  +       PL             +   P G    +     
Sbjct: 91  AIRRVPGQARGIRLAGQGAQSRTPPVAEPLRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 148

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 149 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 205

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 206 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 234


>gi|285017961|ref|YP_003375672.1| lexa repressor protein [Xanthomonas albilineans GPE PC73]
 gi|283473179|emb|CBA15685.1| probable lexa repressor protein [Xanthomonas albilineans]
          Length = 211

 Score = 80.6 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 59/210 (28%), Gaps = 23/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I + I    E   +  + + +AR  G          +     +    + E    I 
Sbjct: 6   TQQAILDLIAERIEHEGVPPSQTEIARALGF---------KGVRAAQYHLEALEQAGAIR 56

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               +    +  L      T   +     +L  P  G            G+    V    
Sbjct: 57  RVPGQ-ARGIRLLGGGGTPTAPPQVDNADILRLPVLGRVAAGSPIGADIGSDDFVV---- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++     D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 ----LDRVFFSPAPDYLLKVQGDSMRDEGIFDGDLIGVHRTRDARSGQIVVARI-EEEIT 166

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 167 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 195


>gi|26990477|ref|NP_745902.1| putative phage repressor [Pseudomonas putida KT2440]
 gi|24985450|gb|AAN69366.1|AE016573_11 repressor protein-related protein [Pseudomonas putida KT2440]
          Length = 289

 Score = 80.6 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 7/204 (3%)

Query: 22  LTPSGLARKA---GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
           L+P   A+ A   G +  S     +  +    +  S E+  ++LAA  E     L     
Sbjct: 83  LSPGEHAQAAVEPGDNKLSAADLVKQMLARSGKGISEETRQRLLAAAQEPADATLLEAEP 142

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
                   E  I       +  GG             +    P         ++      
Sbjct: 143 LRPGLVGDEVWIAHYDVRAAMGGGQIPHDY--PEMFKDVRVSPSHLRELGVTFSEHHHLK 200

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                  SM P  R  D LI++ +I+   GD +        I  K L        +++S 
Sbjct: 201 MVTGWGQSMEPTIRHRDPLIVDVSIREFVGDGIYFFSWGDHIYIKRLQIADEDHFEMISD 260

Query: 199 NCCYPVDTVEMSDIEWIARI--LW 220
           N  +    +   +    AR+  +W
Sbjct: 261 NSRHKDRMIRREETYIQARVLLVW 284


>gi|118579995|ref|YP_901245.1| SOS-response transcriptional repressor LexA [Pelobacter propionicus
           DSM 2379]
 gi|118502705|gb|ABK99187.1| SOS-response transcriptional repressor, LexA [Pelobacter
           propionicus DSM 2379]
          Length = 217

 Score = 80.6 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 56/228 (24%), Gaps = 27/228 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54
           M   S   K + + +    + +   P+   +AR   +  T       +    +G  R   
Sbjct: 1   MEPLSPRQKDVLDFLREFLDSNGYPPTLREIARHLDISGTVAVVRHLEALEKKGWIRR-- 58

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                                             +   ++            G    G  
Sbjct: 59  --------------QPGAFRSISLVAEKAVLYPLDEEGIFAADQLPVSLPIVGTVRAGTP 104

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
                  E     +            + +  SM       GD++++      + GD ++ 
Sbjct: 105 EIPREDIEGYLSLDRNIVASGGSFFLRIKGDSMKNAGMLPGDLVLIRPQPTADNGDVVVA 164

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL 219
               G+   K         I L   N       +  + +D+  I +++
Sbjct: 165 LVD-GEATVKRFFREE-EMIRLQPENELLEPILIADDSADVTVIGKVV 210


>gi|319761962|ref|YP_004125899.1| peptidase s24/s26a/s26b, conserved region protein [Alicycliphilus
           denitrificans BC]
 gi|317116523|gb|ADU99011.1| Peptidase S24/S26A/S26B, conserved region protein [Alicycliphilus
           denitrificans BC]
          Length = 238

 Score = 80.6 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 55/217 (25%), Gaps = 5/217 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +    +R  L  +      G   ++    +      ++      +    L     
Sbjct: 18  QIGQRLKEERKRLGLKATDFESHGGWPASTIYGWESGKASPKS-EFYANTQELGLDLQYI 76

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              +      S        + +   L    +       + +         V V       
Sbjct: 77  ITGRRTAGLPSGPAPAPAGDSDSISLPLLSATGSMGNGNDLITEDVILGEVPVSRKWLAL 136

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
           N   +             SM    R GD  I+++  Q      + +      +  K +  
Sbjct: 137 NLPGSRPEALQLVHAYGDSMGDTLRSGDFAIVDTDYQFADVSGVYVLQANNQLFIKRISR 196

Query: 188 RRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL--W 220
           +   + ++ S N       V      +    R++  W
Sbjct: 197 KLDGTHEITSDNPNVRTVEVLDGSQQVRICGRVVYGW 233


>gi|28210983|ref|NP_781927.1| LexA repressor [Clostridium tetani E88]
 gi|44888102|sp|Q895H6|LEXA_CLOTE RecName: Full=LexA repressor
 gi|28203422|gb|AAO35864.1| lexA repressor [Clostridium tetani E88]
          Length = 200

 Score = 80.6 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 36/220 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
             + I+E I          PS   +     L  TS      KR   +G  R   T+   +
Sbjct: 6   KQEAIYEFIKEQLREKGYPPSVREICNAVELRSTSTVHGHLKRLEEKGVIRRDPTK--PR 63

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +     +I +   +                     P          +    N  +T  +
Sbjct: 64  AIEVLEHSIMKKEMV-------------------DIPVVGTVTAGKPILAVENIEDTFAL 104

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P     +      + Q    K +  SM+      GD+ I+     V  G+ ++       
Sbjct: 105 PINYVRN------KKQLFALKIKGDSMIDTGILDGDLAIVEKNNSVLNGEIVVAL-LGDR 157

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K     +   I L   N       V+    E I +++
Sbjct: 158 ATVKRFFKEKD-YIRLQPENETMEPIIVK--QCEIIGKVV 194


>gi|169633856|ref|YP_001707592.1| putative transcriptional regulator; putative phage-related protein
           [Acinetobacter baumannii SDF]
 gi|169152648|emb|CAP01645.1| putative transcriptional regulator; putative phage-related protein
           [Acinetobacter baumannii]
          Length = 223

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 55/218 (25%), Gaps = 6/218 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNE 67
           + + +     +   T + +A    +   ++   +          P       +       
Sbjct: 3   LKDRLKDSRIKAKKTQAEVAEAVKMSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTT 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRS 125
              +           T           +       F           ++ +   +P   S
Sbjct: 63  GNSEDSFRESDVFSPTVVNNDAADQYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPAS 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                   Q      K +   M    + GD++ ++ +        +      G+ + K +
Sbjct: 123 FFKEKRVAQECMRIIKAKGDGMTDYIKDGDLVGIDISQTEVIDGEIYAFYFAGEGMIKQI 182

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
                 S+ L SLN  +    V      + + + R  W
Sbjct: 183 FKEADGSLILHSLNEKFRDRRVTEENGKNFKVMGRQFW 220


>gi|307297531|ref|ZP_07577337.1| transcriptional repressor, LexA family [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916791|gb|EFN47173.1| transcriptional repressor, LexA family [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 208

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 26/221 (11%)

Query: 1   MT-SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TES 57
           MT +   KKI E I+   + +   PS                 R       R  +   ES
Sbjct: 1   MTLTEKQKKILEYIENFIKLYGYPPS------------IRDICRDFEISSPRGVAKHLES 48

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + K        + + + +  S   ++ +  +++ +L    + + G     +     +   
Sbjct: 49  LEKKGYIERTGVSRGIRVLRSPDGSSLEPGEDVVMLPVIGNVAAG---EAIQAVQTEDEK 105

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           + VP         Y         K    SM       GD +I+      N G+ ++    
Sbjct: 106 IPVPLWMIRRGFEY------YMLKVTGNSMIESHIVNGDFVIIRKQEWANNGEIVVALID 159

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
                 K      G  I L+  N       VE + ++   R
Sbjct: 160 DEYATLKKY-ENEGPKIRLVPSNPEMLPIVVEANRVKIQGR 199


>gi|50914507|ref|YP_060479.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394]
 gi|40218541|gb|AAR83195.1| phage repressor protein [Streptococcus pyogenes]
 gi|50261586|gb|AAT72354.1| UmuD/MucA-like protein [Streptococcus pyogenes]
 gi|50903581|gb|AAT87296.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394]
          Length = 229

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 27/232 (11%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            FSH +    + +      L+ + +A +  +  ++++  +        +  +  ++  IL
Sbjct: 1   MFSHGR----LKQRRLEIKLSQTAIANQLNVHRSAYHNWENGRNTPNQK--NLTALAAIL 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLL-----------YFPPSGSGGFFDSGVFPT 111
                      ++  +  + +   + +                  P  S           
Sbjct: 55  DVPVTYFESEYNIVNNYLQLSPDNQLKAEEYVEELLLSQQTSNVIPLFSVQVLSDIQLSA 114

Query: 112 GNKW---NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
           G      +      I S           D     +  SM P+Y+ G++ ++ S      G
Sbjct: 115 GLGEGFFDEFETETIYSDEEQY----GYDIAAWIEGDSMEPVYKSGEVALIRSNGFDYDG 170

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
             +        +  K L         ++SLN  YP   +    +   +  ++
Sbjct: 171 -AVYALSWNDSVYIKKLYRDEDG-FRMVSLNKDYPEKFIPYEDEPRIVGLVV 220


>gi|21242488|ref|NP_642070.1| LexA repressor [Xanthomonas axonopodis pv. citri str. 306]
 gi|44888837|sp|P60511|LEXA2_XANAC RecName: Full=LexA repressor 2
 gi|44888838|sp|P60512|LEXA_XANCI RecName: Full=LexA repressor
 gi|3420882|gb|AAC31950.1| LexA [Xanthomonas citri]
 gi|21107937|gb|AAM36606.1| LexA repressor [Xanthomonas axonopodis pv. citri str. 306]
          Length = 213

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 53/210 (25%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + +AR  G                R      E++    
Sbjct: 6   TQQAILALIAERIDADGVPPSQTEIARAFGFK------------GIRAAQYHLEALEHAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  T                      +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGQGAQTRTAPVSEVARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|269926117|ref|YP_003322740.1| SOS-response transcriptional repressor, LexA [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789777|gb|ACZ41918.1| SOS-response transcriptional repressor, LexA [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 215

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 62/219 (28%), Gaps = 24/219 (10%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I   +    + + + P+   + R  GL  TS                        L
Sbjct: 9   KQQQILSFLQEFIQEYGIPPTVREIQRSLGLSSTSVVDY-------------------NL 49

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               E      +   S G +   K+ E  +   P  G          P       V    
Sbjct: 50  KQLEEKGYITRNKNISRGISLPFKKVEENVTTIPVVGVIAAGSPIEVPEDLSDPAVWADT 109

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDI 180
           I   ++ +          + +  SM+      GD++I+  A     G+ + +   +    
Sbjct: 110 IEVNNSLLNLKSDGLFALRVKGHSMVDALIDDGDLIIMRHANTAENGETVAVWLEKEKAT 169

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K      G  I L   N       V   DI+   +++
Sbjct: 170 TLKKFY-HEGDRIRLQPANITMQPIYVSPDDIQIQGKLV 207


>gi|313499032|gb|ADR60398.1| Prophage PSPPH03, Cro/CI family transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 293

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 67/266 (25%), Gaps = 55/266 (20%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSG------------------LARKAGLDPTSFNK---- 40
             S KKI       A+   +TP+                   LAR   +    F+     
Sbjct: 30  KLSQKKI-------ADEAGMTPAAVNLYFKGLNPLNAKFAAVLARLLEVPVEQFSPRLAD 82

Query: 41  --------------SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86
                          K+   E         +  K+     + I   +     + R +   
Sbjct: 83  EIRSLRSLPAGDQEHKKGAAEKVMAMLKQHAGKKLDEDAQQKIAAAVAESLVEDRPSNVV 142

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGV-------PEIRSPHNGIYAIQTQ 136
             +   L                  G+     +   V         +       Y  Q+ 
Sbjct: 143 SADFSGLKVKKDEIFIPQYDIRASMGHGQVPPDYTEVMRNVIVKESVLHEKGVTYTSQSA 202

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                    SM       D LI++  +    GD + +    G +  K L         L+
Sbjct: 203 LAMIFGWGQSMEGTINDKDPLIVDRGVNEFVGDGIYVLTWHGHLYIKRLQFFDEDHFWLI 262

Query: 197 SLNCCYPVDTVEMSDIEWIARI--LW 220
           S N  +      + D+   A++  +W
Sbjct: 263 SDNEKHKDQQARIDDVTIHAKVLLIW 288


>gi|270265288|ref|ZP_06193549.1| hypothetical protein SOD_m00200 [Serratia odorifera 4Rx13]
 gi|270040692|gb|EFA13795.1| hypothetical protein SOD_m00200 [Serratia odorifera 4Rx13]
          Length = 239

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 21/229 (9%)

Query: 2   TSFSHKKI--WEAIDRMAERH----NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
            S + +++     +  + E       +T   +A + G+   +                + 
Sbjct: 8   KSLTTEQLEDAARLKALYESKKKSLGVTQYTIADELGITQGAVGHYLNGRN-----ALNL 62

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                       +I        ++ +    +E        P + S  +        G   
Sbjct: 63  SVAAAFAKILQVSIADFSPSIGNEAQKILSREPSNIKYIGPYNKSREYPLISWVQAGAWA 122

Query: 116 NTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCG 168
             +    + E+   +     I  +    + +  SM         +G ++++++      G
Sbjct: 123 EAIEPYTLDEVDEWYESDVKIFGKAFWLRVEGDSMTAPTGVSVPEGTLVLVDTGRDAING 182

Query: 169 DRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
             ++       +   K LI   G+   L  LN  +P+  +  +  + I 
Sbjct: 183 SLVIAKMVDANEATFKKLIIDGGQKY-LKGLNPAWPMKEINGN-CKIIG 229


>gi|323176678|gb|EFZ62268.1| repressor protein CI [Escherichia coli 1180]
          Length = 239

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 71/225 (31%), Gaps = 16/225 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++ +  D   ++ +L+    A   G     + ++     I       +TE+  K  A  
Sbjct: 16  ERLRKIWDEKRKQLSLSQEKAADILGFKTQGAVSQLLNAKI-----ALNTENTLKFAALL 70

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIR 124
                ++        R+            F                    + +    +  
Sbjct: 71  QVPAEEINPDLSDLLRSIRTHTPGNRRNLFEKYYEYPLLSCVQAGAFTMDDFSYTQKDAI 130

Query: 125 SPHNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +       +    + +  SM       P + +G +++++   ++  GD  + +    
Sbjct: 131 KWISTTTKASDRSFWLEVKGHSMTAPQGGKPSFPEGMLILVDPEREIEDGDFCVARMNGD 190

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           +   K  I   G++  L  LN  + +      + +++ +++  SQ
Sbjct: 191 EFTFKRFIRESGKAY-LEPLNPRFDMIECN-ENCQFVGKVI-KSQ 232


>gi|260854614|ref|YP_003228505.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
 gi|257753263|dbj|BAI24765.1| putative phage repressor protein CI [Escherichia coli O26:H11 str.
           11368]
          Length = 215

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 15/209 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+ +   LT   L + +G+   +    ++   E     P ++++ K+  A  
Sbjct: 3   ESLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T   LL    S   +  +      + Y     +  F       T    + +        
Sbjct: 58  TTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGEKTMGNVDRITTFFDVEE 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181
            +   ++          + S  P    G  +IL        G  + +           + 
Sbjct: 118 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLKNEPSMT 173

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            K L+   G+ + L  LN  Y    +   
Sbjct: 174 IKKLV-IDGKLVYLSPLNPRYQSSLLTPE 201


>gi|222875118|gb|EEF12249.1| predicted protein [Populus trichocarpa]
          Length = 220

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 44/101 (43%)

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           V + EI   +  I+    +    + + +SM P    G+ +++      + GD + I+ + 
Sbjct: 7   VDIEEIHVGYIDIFTTDPKAFCLRVKGSSMEPRIHSGEFVLVEPQSPFSNGDDVFIRTKD 66

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G  + K+L  ++       S+N  +    + + ++E +  +
Sbjct: 67  GKNMIKILDYQKDGEYRFSSINNDHKPFNLAIDEVELVYYV 107


>gi|312878550|ref|ZP_07738425.1| LexA repressor [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794675|gb|EFR11129.1| LexA repressor [Caldicellulosiruptor lactoaceticus 6A]
          Length = 381

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           I +   +    K +  SM     + GDI I+         D ++     G+I  K     
Sbjct: 286 IISDPERYFAIKVKGDSMVEANIKDGDIAIVQKCNTAENRDIVI-AWLDGEITVKRFCKM 344

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G ++ L+  N  Y    ++  ++  + +++
Sbjct: 345 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 374


>gi|239502427|ref|ZP_04661737.1| Repressor protein C2 [Acinetobacter baumannii AB900]
          Length = 232

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 15/221 (6%)

Query: 8   KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            + +AID + E     + +       L  +  ++          R     ++ K +   N
Sbjct: 10  NLRKAIDALIESGKFKSDAAFCEHYDLSTSHISQMINGHGSFGERAAR--NLEKKVGWPN 67

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +        S   +          L   P               +  N    P   S 
Sbjct: 68  GYLDLENQEDQSPIVSESNVGPTKNNLRTIPLLDYVQAGLFHDVGYDGIN----PIGESY 123

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD---IVAK 183
                         K +  SM P ++ GD ++++++++   G  ++ +           K
Sbjct: 124 TTYQGYKPECVFSLKVEGNSMSPEFKAGDEIVVDASLEPKPGSLVIAQEVQHGIARTTFK 183

Query: 184 VLI-----SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                         ++L+ LN  YP       +I  I  ++
Sbjct: 184 KYRVIGINEFGVDVVELVPLNPDYPTYNSTQIEISIIGVVV 224


>gi|70731299|ref|YP_261040.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345598|gb|AAY93204.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
           Pf-5]
          Length = 235

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 60/217 (27%), Gaps = 15/217 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +   +T   LA + G+               + R P  E + ++L        ++
Sbjct: 22  VKANMKGRKVTQEKLAERLGMSQGGIGHWLS-----KRRQPKIEDMNRVLEEIGMGFLEV 76

Query: 73  LDLPFSDG---RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             +           E       LL                    + +             
Sbjct: 77  ALVVREKPLLGDDGEPLADGPALLNKYNPYFRYPVSDWRVAGEVREDGQPAYVPERYELS 136

Query: 130 IYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKV 184
            Y  +           +M+        +  +++++ AI    G   ++  P + + + + 
Sbjct: 137 DYQARGAAFWLVVVGDAMIAPSGLSISQDMLILVDPAIGAEPGKLVVVQCPGSDEAIFRK 196

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           L+ + G    L+ LN  YP           I  ++ A
Sbjct: 197 LV-QEGGLRYLVPLNPTYPKMLYS-DKCRIIGVVVQA 231


>gi|212711485|ref|ZP_03319613.1| hypothetical protein PROVALCAL_02558 [Providencia alcalifaciens DSM
           30120]
 gi|212685941|gb|EEB45469.1| hypothetical protein PROVALCAL_02558 [Providencia alcalifaciens DSM
           30120]
          Length = 253

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 72/220 (32%), Gaps = 20/220 (9%)

Query: 6   HKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            +K    + + A+    +     + +A K GL P + +K          R  +   + ++
Sbjct: 35  REKFASRLAQAAKDAGYSEHGKATEIAEKLGLTPKAVSKWFNAESI--PRQDAMNKLAEL 92

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L      +       F    ++ +  +  P          G ++    P         + 
Sbjct: 93  LRVEVVWLQHGELAGFDSNVSSPRPYRPAPKYPVISWVQAGSWNEACEP-------YTLD 145

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPR 176
           +I   +     +Q      + +  SM         +G ++++++  +      ++     
Sbjct: 146 QIDEWYESEVHVQGAAFWLRVEGDSMTASSGQSVPEGSLVLVDTGREPINNSLVIAKLTE 205

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           + +   K L+   G+   L  LN  +P+  +  +  + I 
Sbjct: 206 SNEATFKKLVIDGGQKF-LKGLNPAWPITPINGN-CKIIG 243


>gi|332291433|ref|YP_004430042.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169519|gb|AEE18774.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 256

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 69/217 (31%), Gaps = 16/217 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
                + E H+ T +  A K G+  ++    +R   +      S + I ++L   N    
Sbjct: 11  RRFKEVREDHDFTQAEFADKLGIKNST-ADIERGRTK-----LSGQVITELLRLFNINPL 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            +          T+K +    ++                     +               
Sbjct: 65  WIYGYSKQKHLNTDKSDVSPKVV-VVDKDDNENMVLVNQKAAAGYPNNIADVEWYQKLPA 123

Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVA 182
           +               + +  SM+P +R  D ++     ++     +++ +      +V 
Sbjct: 124 FDFPIPQYRNATYRGFQIEGDSMMPSFRPDDWVLAKGVESLDYASDNKVYVIVLQDAVVV 183

Query: 183 KVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K L      + + L+S+N  Y    V +SDI+ I ++
Sbjct: 184 KKLQKMPDSKKVLLISINEEYVPYEVAVSDIQEIWQV 220


>gi|157414969|ref|YP_001482225.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385933|gb|ABV52248.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747607|gb|ADN90877.1| Putative peptidase [Campylobacter jejuni subsp. jejuni M1]
          Length = 209

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 24/223 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M     +++ E +  +        L    +A++ G+ P +FN  K               
Sbjct: 1   MQM---QEVIEKLKDILASEGKCNLKTKDIAKELGIHPDTFNSMKFRNSIPYP------Q 51

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           I   L   N +I           +   + + +I  LY   +  GG         G   + 
Sbjct: 52  ILNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDL 102

Query: 118 VGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           +   + I       +    +         SM P+ + G I +++           +    
Sbjct: 103 IDSSDLIIDEKVLNFFGSKECEFITCYGESMEPIIKDGSICVIDRNKTFKNKSICV-INT 161

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 162 RDGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 203


>gi|86149224|ref|ZP_01067456.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85840582|gb|EAQ57839.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 209

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 22/222 (9%)

Query: 1   MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     + I +  D +A     +L    +A++ G+ P +FN  K               I
Sbjct: 1   MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 52

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L   N +I           +   + + +I  LY   +  GG         G   + +
Sbjct: 53  LNFLNQRNISINYFFYGVSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 103

Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E+      + +    +         SM PL + G I +++           +     
Sbjct: 104 DCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 162

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 203


>gi|294339882|emb|CAZ88245.1| LexA repressor [Thiomonas sp. 3As]
          Length = 243

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 15/218 (6%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPT-----SFNKSKRFG----IEGRNRWPS 54
            ++I + I          P  + +A K G               R G      G +R   
Sbjct: 12  QQEILDLITASVRELGYPPTRAEIAAKLGFRSANAAEDHLQALARKGVIELTPGASRGIR 71

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                +   +T  +      +                 L  P +        G    G+ 
Sbjct: 72  ITESQRASPSTTTSGKTSGAMGGRASG-LRADLSHGLQLALPGAEQLCLPLVGRVAAGHP 130

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
                  E     +        D   K +  SM       GD+L + S+     G  ++ 
Sbjct: 131 ILAQEHIEQTLNVDPGAFSVRPDYLLKVRGMSMRDAGILDGDMLAVKSSQTAQSGQIVVA 190

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           +    ++  K L   +   I+L+  N  +    V+ S 
Sbjct: 191 RI-GDEVTVKRL-RLQADHIELLPANPEFAPIRVDASQ 226


>gi|166031859|ref|ZP_02234688.1| hypothetical protein DORFOR_01560 [Dorea formicigenerans ATCC
           27755]
 gi|166028312|gb|EDR47069.1| hypothetical protein DORFOR_01560 [Dorea formicigenerans ATCC
           27755]
          Length = 205

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 56/221 (25%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I + I          P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQQEILDYIKSQILERGFPPAVRDICEAVHLKSTSSVHSHLETLEKNGYIKRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL  +     + +                       P          +    N  N   
Sbjct: 69  EILDESFNFNRREMVN--------------------VPLIGRVAAGEPLLAQQNIENYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         +    Q         SM+      GD++++      + GD ++      
Sbjct: 109 IPME-------FMPNNQTFMLTVCGESMVNAGILNGDMVLVEQQQTADNGDMVVALID-D 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K         I L   N       V   D + + +++
Sbjct: 161 GATVKTFYKEE-GFIRLQPENDFMDPIIVR--DCQILGKVI 198


>gi|229827171|ref|ZP_04453240.1| hypothetical protein GCWU000182_02556 [Abiotrophia defectiva ATCC
           49176]
 gi|229788789|gb|EEP24903.1| hypothetical protein GCWU000182_02556 [Abiotrophia defectiva ATCC
           49176]
          Length = 231

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 20/231 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNR---------- 51
           K + + I    + + LT   LA+K       + P S +  +       +R          
Sbjct: 2   KDLGKTIAGHRKAYKLTQCQLAKKLTEYDIYVKPNSVSSWESGISLPSSRQFLAICEILN 61

Query: 52  --WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                TE I          + +       +     +K  +  +    P            
Sbjct: 62  IYDIYTEFIGTNPDNPFRNLNKEGVDKVMEYTRLLEKSGDYRIAEIIPLHVIRERKVYYT 121

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                  +    E    ++     +  D        SM P+Y   +++ +    Q+  G+
Sbjct: 122 AVSAGNGSFLDGEDYEMYSSADIPEKADFGVHISGDSMEPVYHDRELIWIEQTEQLEDGE 181

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
             +     G+   K   + R  +  L+SLN  Y    + E S  +   R+L
Sbjct: 182 IGIFYLD-GNAYVKQFQNNRKGAY-LVSLNKAYEPMPITESSSFKIFGRVL 230


>gi|255280891|ref|ZP_05345446.1| repressor LexA [Bryantella formatexigens DSM 14469]
 gi|255268339|gb|EET61544.1| repressor LexA [Bryantella formatexigens DSM 14469]
          Length = 206

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 49/218 (22%), Gaps = 30/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I E I          P+   +     L  TS   S              E++ K  
Sbjct: 9   KQSEILEYIKSEILNRGFPPAVREICEAVNLKSTSSVHSH------------LETLEK-- 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           D       E                   G    G     V   E
Sbjct: 55  ----------NGYIRRDPTKPRAIEIIDDNFNLVRREVVNVPIVGRVAAGEPILAVENIE 104

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    +    Q      Q  SM+      GD +++      N GD ++         
Sbjct: 105 SYFPIPAEFMPNAQTFMLTVQGESMINAGIFDGDQILVQEQSVANNGDMVVAL-VEDSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V   +++ + +++
Sbjct: 164 VKTFYK-EDGYYRLQPENDNMDPIIV-RGELQILGKVI 199


>gi|149012706|ref|ZP_01833682.1| phage transcriptional repressor [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763306|gb|EDK70244.1| phage transcriptional repressor [Streptococcus pneumoniae
           SP19-BS75]
          Length = 263

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 68/261 (26%), Gaps = 59/261 (22%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I E I    ++  +T   LA++ G+  ++     +         PS   I K+     
Sbjct: 8   QIIAENITHFRKQRGITQKELAKEVGITASTMTDYMKLRS-----APSFGVIQKLADYFG 62

Query: 67  --ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------------------- 105
             ++         S     +  +     +                               
Sbjct: 63  VKKSDIDTTFKEESTNSLPDAPDSLTQQIMDKVVHLTPPNQKIVLRTSEELLESQNEEET 122

Query: 106 ----------------------SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
                                 +  F  G  ++      I             D   K  
Sbjct: 123 KINEVSEVISLYQVEVVSETAAACGFNYGFGYDDTDRETIEVDERP----PRHDIATKVS 178

Query: 144 DTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM P Y+ GDIL +++  +    GD  +I         K +       + L+SLN  Y
Sbjct: 179 GDSMQPDYQDGDILYLVDKGLTTYNGDLAVIAY-GDRSYFKKIY-TENGRLRLVSLNDKY 236

Query: 203 PVDTVE---MSDIEW-IARIL 219
               ++     D    I  ++
Sbjct: 237 EDIILDFPPAEDTHIKIYAVV 257


>gi|123441735|ref|YP_001005719.1| putative prophage repressor protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088696|emb|CAL11500.1| putative prophage repressor protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 240

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++   + +  +     +   ++   +A + G+  ++ N+             + 
Sbjct: 4   KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNK 114
            +  K+L     +    L    +    +        L   P    +  +        GN 
Sbjct: 62  AAFAKVLNEPISSFSPSLATELAKMAESLSISSPNRLNDKPTGTVANSYPLISWISAGNW 121

Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167
           +  +    + +I                   +  SM       + +G I++++   +   
Sbjct: 122 YEAIEPYQLRDIEIWPESTKNAHDSAFWLSVKGDSMTSPSGISFPEGMIILVDPEKEPMP 181

Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++       +   K LI   G    L  LN  Y +  +  +  + +  ++
Sbjct: 182 GNFVVAKLTDDNEATFKKLIVDAGVKY-LKPLNPAYRLIELNGN-CKILGVVV 232


>gi|152990207|ref|YP_001355929.1| hypothetical protein NIS_0458 [Nitratiruptor sp. SB155-2]
 gi|151422068|dbj|BAF69572.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 246

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 17/223 (7%)

Query: 10  WEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +E +    E+  ++     A++   D T+ ++ +R     +    +     ++  A  E 
Sbjct: 24  YERLKFFREKVLDIPQGEFAKRIDTDVTAVSRYERGAGAKKI---TYNIKSRLKDAFGEE 80

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + Q +          +   K +                 V P+  K       +I     
Sbjct: 81  VAQWIATGELPQIDQKSDVKPVLQTNESCKEGYPVHILSVRPSAGKTTNFEAIDIFDSGQ 140

Query: 129 GIY--------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                       ++ +    +    SM+P+      +I++   +   GD L +      +
Sbjct: 141 SAIIDKIFIKKPVKGRLRAMQVDGYSMIPMLFPDSWVIVDETKE-FTGDGLYVINFDNVL 199

Query: 181 VAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
           + K+L       ++ + S N  Y    ++  D    E   +++
Sbjct: 200 MVKLLEMNLNTGNLWVKSANPDYDSWEIKADDQRHFEIYGKVI 242


>gi|238023271|ref|ZP_04603697.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147]
 gi|237865391|gb|EEP66531.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147]
          Length = 214

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 28/223 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M + +   I + I +  +  +LT + LA+K  G+   + ++ +    +     P+ E+++
Sbjct: 1   MQATT---IGQRIKQKRKELHLTQADLAKKVQGVSHAAISQWETDITK-----PNAENLY 52

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +          LL     +    + +      ++         +DS       +   + 
Sbjct: 53  DLSQIFKCDFVWLLRGEGENITPHKIENVTKIPVFRYDDLKN--WDSTRIINHTETEYIM 110

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                S                  D SM P +  GD+++++  ++   G+ +L +   G+
Sbjct: 111 SEINHSEF---------AVAFNIIDDSMTPDFLVGDLIVIDPKVRPLPGEFVLARS--GE 159

Query: 180 IVAKV------LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                      L     +S  L+ LN  Y   +    +IE I 
Sbjct: 160 TTLFRKFKANELDLGNEQSFSLIPLNDDYASLSSSNHEIEIIG 202


>gi|312961392|ref|ZP_07775897.1| LexA repressor [Pseudomonas fluorescens WH6]
 gi|311285050|gb|EFQ63626.1| LexA repressor [Pseudomonas fluorescens WH6]
          Length = 205

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT+ + ++  I   I     +    PS   +A   G    S  +                
Sbjct: 4   MTNLTPRRTAILTFIRDRIAQQGQPPSLAEIAEAFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K + A  E     ++   + G     +      L  P  G                 
Sbjct: 48  ---KHVVALTEAGFIEVNPNQARGIRLLNQPARPQWLDVPVLGRVAAGRPIGADAEVH-- 102

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                  R   +    ++T D   + Q  SM       GD++ +  + +   G  ++ + 
Sbjct: 103 ------SRLQLDPATFVKTPDYLLRVQGDSMIEDGILDGDLVGVRRSAEALNGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K      G S+ L+  N  Y    V    
Sbjct: 157 D-GEVTIKRFER-NGDSVRLLPRNPAYQPIVVGPDQ 190


>gi|305666996|ref|YP_003863283.1| transcriptional regulator [Maribacter sp. HTCC2170]
 gi|88709231|gb|EAR01465.1| transcriptional regulator, putative [Maribacter sp. HTCC2170]
          Length = 278

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 65/211 (30%), Gaps = 16/211 (7%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
                 T +  A+  G+  T+    +R   +      S + + ++L         L    
Sbjct: 38  RRDLGFTQAEFAKILGISSTT-ADIERGRTK-----LSGKVVAELLKQFKINPLWLFGES 91

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-- 134
            S    T K      ++    S                +               + I   
Sbjct: 92  DSQYLETSKTSVIPKVV-TVDSTDNENMVLVNAKAAAGYPQNIQDTSWYKQLPAFDIPLP 150

Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGDIVAKVLISR 188
               T     + +  SMLP  R G+ ++  +   +     +++ +      ++ K +   
Sbjct: 151 EFRNTTYRGFQVEGDSMLPNLRPGEWVLAKAVEDIEHVSANKMYVVVLQDAVLVKKIEKT 210

Query: 189 RGRS-IDLMSLNCCYPVDTVEMSDIEWIARI 218
              + I L+SLN  YP   ++   I+ I ++
Sbjct: 211 PNSANITLISLNETYPPYEIKPQQIQEIWQV 241


>gi|324114073|gb|EGC08046.1| peptidase S24 [Escherichia fergusonii B253]
          Length = 189

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%)

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                                + K      L F  +   GF             +V + E
Sbjct: 16  DMMELIEKSFNLPRGWMDMLADGKAGATDHLEFAGNVRAGFVPVIGEAVLGVDGSVDMIE 75

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            RS    IY+        K +  SM P  + G+ +++     V+ GD + ++ + G  + 
Sbjct: 76  FRSGWLSIYSGDKDAYGLKVKGDSMWPRIQSGEYVVIEPNTPVHPGDEVFVRTKDGHNMI 135

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K++   R       S+N  +   T+ + +++ +  +
Sbjct: 136 KIMNKTRDGDYQFSSINSDHRPITLPVEEVDKMHFV 171


>gi|319786625|ref|YP_004146100.1| transcriptional repressor, LexA family [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465137|gb|ADV26869.1| transcriptional repressor, LexA family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 216

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 18/210 (8%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    E   +  + + +AR  G          +     +    + E+   I 
Sbjct: 6   TQQAILHLIAERIEAEGMPPSQAEIARAFGF---------KGVRAAQYHLEALEAAGAIE 56

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                     +          +            P            P G    T  + E
Sbjct: 57  RVPGRARGIRVRQLPQALHEEQAATAANDDALRLPVLGRVAAGM---PIGADVPT-DLAE 112

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + +    + D   + Q  SM       GD++ ++   +   G  ++ +    +I 
Sbjct: 113 SFLVLDRVLFSPSPDYLLRVQGDSMRDEGIFDGDLIGVHRTREARSGQIVVARVD-EEIT 171

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 172 VK-LLKIGRDRIRLLPRNPDYAPIEVLPDQ 200


>gi|291278891|ref|YP_003495726.1| SOS-response transcriptional repressor [Deferribacter desulfuricans
           SSM1]
 gi|290753593|dbj|BAI79970.1| SOS-response transcriptional repressor [Deferribacter desulfuricans
           SSM1]
          Length = 196

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 52/186 (27%), Gaps = 9/186 (4%)

Query: 40  KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
           +   F I  +NR+    +I +I      +                   +           
Sbjct: 8   QMLNFLISFKNRYGYYPTIREICTHLKLSSTASAKKMLDRLEEKGVIRRGHGKARLIEIV 67

Query: 100 SG----GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKG 154
           +     G    G    G    +             +    +    K    SM        
Sbjct: 68  NHTHKKGIPVLGKVAAGYPILSEENILTYINLEK-FLDTDKYFFLKVTGDSMIEKKIFDE 126

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIE 213
           D++++    ++  GD  + +   G++  K     R  SI L   N  Y    VE   D E
Sbjct: 127 DLVLVELTKELKNGDIGVFRLN-GEVTVKTYYYNRN-SIILKPENPFYENIIVEETDDFE 184

Query: 214 WIARIL 219
            I +++
Sbjct: 185 IIGKVV 190


>gi|257791362|ref|YP_003181968.1| SOS-response transcriptional repressor, LexA [Eggerthella lenta DSM
           2243]
 gi|317490503|ref|ZP_07948983.1| LexA repressor [Eggerthella sp. 1_3_56FAA]
 gi|325831483|ref|ZP_08164737.1| repressor LexA [Eggerthella sp. HGA1]
 gi|257475259|gb|ACV55579.1| SOS-response transcriptional repressor, LexA [Eggerthella lenta DSM
           2243]
 gi|316910396|gb|EFV32025.1| LexA repressor [Eggerthella sp. 1_3_56FAA]
 gi|325486737|gb|EGC89185.1| repressor LexA [Eggerthella sp. HGA1]
          Length = 212

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 53/218 (24%), Gaps = 24/218 (11%)

Query: 6   HKKIWEAIDRMAERHNL--TPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            + + + I+          T   + +  GL  P++ +   +   E          + K  
Sbjct: 9   QQAVLDCIEECIREKGYGPTVREVCQSLGLSSPSTVHVHLKALEEKG--------LIK-R 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                    L          T   +     +   P        S +    N  +T+ +P 
Sbjct: 60  DPLKSRSIALTYQLEDAALATNVVQPSFSNIVNVPLVGNVAAGSPILAEENITDTLSLPT 119

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                               +  SM       GD +++      N GD ++         
Sbjct: 120 EIVG-------DAPSFLLSVRGESMIEAGINDGDYVVVKEQPVANNGDIVVAIID-DGAT 171

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K         I L   N          +D     +++
Sbjct: 172 VKRFFKESD-HIRLQPENSTMDPII--TTDCAIAGKVV 206


>gi|94263341|ref|ZP_01287156.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
 gi|93456296|gb|EAT06426.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
          Length = 145

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +      +  + A        +    SM+       DIL+++ +++   G R++I  
Sbjct: 37  EDYLEGQLDLNQLMVAHPAATFFVRVAGDSMINAGIHHNDILVVDRSLEPTNG-RVVIAV 95

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K L+ ++  +  LM+ N  YP   +   +   I  ++
Sbjct: 96  LNGELTVKRLV-QKNGTARLMAENPNYPPIELTEENACQIWGVV 138


>gi|66395312|ref|YP_239602.1| ORF019 [Staphylococcus phage 69]
 gi|66396425|ref|YP_240780.1| ORF019 [Staphylococcus phage 92]
 gi|151221206|ref|YP_001332028.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|257433183|ref|ZP_05609541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|296277282|ref|ZP_06859789.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus MR1]
 gi|62635663|gb|AAX90774.1| ORF019 [Staphylococcus phage 69]
 gi|62636839|gb|AAX91950.1| ORF019 [Staphylococcus phage 92]
 gi|104641720|gb|ABF73098.1| cI-like repressor [Staphylococcus aureus phage phiNM2]
 gi|150374006|dbj|BAF67266.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|257281276|gb|EEV11413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
          Length = 239

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 32/236 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I     + NLT   L  K      + +  +        R P  + +F+I    N +
Sbjct: 10  IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGY-----RTPKQDDLFEIAHILNIS 64

Query: 69  ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGG---------------FFDSG 107
           I  L     +               ++  +L +                           
Sbjct: 65  IDDLFPTRNNKKNDITSIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 124

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              TG         +I          +T    D        SM P+ ++G    +     
Sbjct: 125 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 184

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +++
Sbjct: 185 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 238


>gi|29028568|ref|NP_803258.1| cI-like repressor [Staphylococcus phage 11]
 gi|57651248|ref|YP_185213.1| prophage L54a, repressor protein, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|66395526|ref|YP_239894.1| ORF018 [Staphylococcus phage 42E]
 gi|88195767|ref|YP_500576.1| phage repressor protein [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|18920492|gb|AAL82233.1| cI-like repressor [Staphylococcus phage 11]
 gi|57285434|gb|AAW37528.1| prophage L54a, repressor protein, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|62636019|gb|AAX91130.1| ORF018 [Staphylococcus phage 42E]
 gi|87203325|gb|ABD31135.1| phage repressor protein, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|315193399|gb|EFU23796.1| phage repressor protein, putative [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 239

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 32/236 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I     + NLT   L  K      + +  +        R P  + +F+I    N +
Sbjct: 10  IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGY-----RTPKQDDLFEIAHILNIS 64

Query: 69  ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGG---------------FFDSG 107
           I  L     +               ++  +L +                           
Sbjct: 65  IDDLFPTRNNKKNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDEYKESKLVSYIA 124

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              TG         +I          +T    D        SM P+ ++G    +     
Sbjct: 125 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 184

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +++
Sbjct: 185 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 238


>gi|255038665|ref|YP_003089286.1| putative phage repressor [Dyadobacter fermentans DSM 18053]
 gi|254951421|gb|ACT96121.1| putative phage repressor [Dyadobacter fermentans DSM 18053]
          Length = 255

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 67/228 (29%), Gaps = 19/228 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     ++ +    ++ E  NLT +  A + G+  T+    +R    GR R P    + K
Sbjct: 1   MLMAIDEE-FRRFKQIREELNLTQAAFADELGISATT-ADIER----GRTRIPG--QVVK 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L          L            K    P +                     +     
Sbjct: 53  ELLRKYHINPLWLFGDSPQKYLHADKMYVNPKVVTVDQAGKDNIVLVSAKAAAGYPNNIG 112

Query: 121 PEIRSPHNGIYAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL 171
                     + I             +    SM P  + G+ +    ++    ++    +
Sbjct: 113 DAQWFEALPAFTIPLPEYRNATFRGFQVDGDSMTPALQSGEWIWARAVDDWDTLSD-KHM 171

Query: 172 LIKPRTGDIVAKVLISRRGRSID-LMSLNCCYPVDTVEMSDIEWIARI 218
            +      ++ K L   +  +   L+SLN  Y    V+ ++I  I ++
Sbjct: 172 YVIVTVDSVLVKKLRKEKDSAFVNLISLNPDYAPIRVDRNEIREIWQV 219


>gi|153954390|ref|YP_001395155.1| hypothetical protein CKL_1765 [Clostridium kluyveri DSM 555]
 gi|146347271|gb|EDK33807.1| Conserved hypothetical protein with LexA domain [Clostridium
           kluyveri DSM 555]
          Length = 815

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 12/101 (11%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             ++       +    +    K +  SM       GD++++      +  D + +     
Sbjct: 709 YEDLLRLPVHWFNNNEEHFVLKVKGDSMIEANIDNGDLVVIKKQNAADNRDIVAVAIDME 768

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K    + G ++ L+  N  Y    V  + ++ +  ++
Sbjct: 769 NATLKRF-RKMGDTVLLIPENEEYEPIQVRSNQVKILGIVV 808


>gi|86153305|ref|ZP_01071509.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843031|gb|EAQ60242.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 209

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 22/222 (9%)

Query: 1   MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     + I +  D +A     +L    +A++ G+ P +FN  K               I
Sbjct: 1   MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSIKFRNSIPYP------QI 52

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L   N +I           +   + +  I  LY   +  GG         G   +++
Sbjct: 53  LNFLNGRNISINYFFYGVSPKDQLECENKYRILKLYKTNASLGG---------GGINDSI 103

Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E+      + +    +         SM PL + G I +++           +     
Sbjct: 104 DCSELIVDEKLLNFFGGKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 162

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +  K ++ +    I L SLN  Y     +  D   I  I+
Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYKDVFYKNGDFLLIGAIV 203


>gi|315058148|gb|ADT72477.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 209

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 69/222 (31%), Gaps = 22/222 (9%)

Query: 1   MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     + I +  D +A     +L    +A++ G+ P +FN  K               I
Sbjct: 1   MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 52

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L   N +I           +   + + +I  LY   +  GG         G   + +
Sbjct: 53  LNFLNERNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGG---------GGINDLI 103

Query: 119 GVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E I       +    +         SM PL + G I +++           +     
Sbjct: 104 DCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 162

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKSGDFLLIGVVI 203


>gi|321157034|emb|CBW39022.1| Putative phage repressor protein [Streptococcus phage 040922]
          Length = 263

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 69/261 (26%), Gaps = 59/261 (22%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I E I    ++  +T   LA++ G+  ++     +         PS   I K+     
Sbjct: 8   QIIAENITHFRKQRGITQKELAKEVGITASTMTDYMKLRS-----APSFGVIQKLADYFG 62

Query: 67  ETICQLLDLP-------------------------------------------FSDGRTT 83
                +                                                 +   T
Sbjct: 63  VKKSDIDTTFKEESTNSLPDAPDSLTQQIMDKVVQLTPPNQKIVLRTSEELLESQNEEET 122

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
           +  E    +  +          +  F  G  ++      I             D   K  
Sbjct: 123 KINEVSEVISLYQVEVVSETAAACGFNYGFGYDDTDRETIEVDERP----PRHDIATKVS 178

Query: 144 DTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM P Y+ GDIL +++  +    GD  +I         K +       + L+SLN  Y
Sbjct: 179 GDSMQPDYQDGDILYLVDKGLTTYNGDLAVIAY-GDRSYFKKIY-TENGRLRLVSLNDKY 236

Query: 203 PVDTVE---MSDIEW-IARIL 219
               ++     D    I  ++
Sbjct: 237 EDIILDFPPAEDTHIKIYAVV 257


>gi|170724550|ref|YP_001758576.1| LexA repressor [Shewanella woodyi ATCC 51908]
 gi|229621749|sp|B1KM68|LEXA_SHEWM RecName: Full=LexA repressor
 gi|169809897|gb|ACA84481.1| LexA repressor [Shewanella woodyi ATCC 51908]
          Length = 205

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 35/214 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I        + P  + +A++ G                     + E
Sbjct: 1   MRPLTPRQAEILELIKCNIAETGMPPTRAEIAKRLGFKSA---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                          + I L         G    G    G    
Sbjct: 46  HLKALAKK-------------GCIEIIPGTSRGIRLAQTEELEEQGLPLIGQVAAGEPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   + +  SM  +   +GD+L ++ A Q   G  ++ + 
Sbjct: 93  AQEHVEQHYQVDPNMFHPSADFLLRVRGDSMKDIGILEGDLLAVHKAEQARNGQVVVAR- 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K    + G ++ L + N  Y    V++
Sbjct: 152 VEDDVTVKRFEKK-GSTVYLHAENEDYSPIVVDL 184


>gi|94266498|ref|ZP_01290188.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
 gi|93452885|gb|EAT03399.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
          Length = 145

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +      +  + A        +    SM+       DIL+++ +++   G R++I  
Sbjct: 37  EDYLEGQLDLNQLMVAHPAATFFVRVAGDSMINAGIHHNDILVVDRSLEPTNG-RVVIAV 95

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K L+ ++  +  LM+ N  YP   +       I  ++
Sbjct: 96  LNGELTVKRLV-QKNGTARLMAENPNYPPIELTEESACQIWGVV 138


>gi|307710044|ref|ZP_07646489.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619229|gb|EFN98360.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 260

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 66/242 (27%), Gaps = 42/242 (17%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW---------------- 52
           I E I +    +  T   L  K G+   +    ++     +                   
Sbjct: 10  IGEKIKQYRLANGWTQQELGAKIGISKNAIGNYEKGFRSPKKNTMFDLANAFNVSIDDLF 69

Query: 53  --------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
                   P+T  I  I         + +       R  ++K ++  +          + 
Sbjct: 70  PPIQKDTPPTTSPIQTIYDQLEPPGQRKVITYAEKLRDEQEKRRKEKINEVSEKVIDLYQ 129

Query: 105 DSGV--------FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
              V        F  G  ++      I             D   K    SM P Y+ GDI
Sbjct: 130 VEVVSETAAASGFNYGFGYDDTDRETIEVDERP----PRHDIATKVSGDSMQPDYQDGDI 185

Query: 157 L-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDI 212
           L +++  +    GD  +I         K +       + L+SLN  Y    ++     D 
Sbjct: 186 LYLVDRGLTTYNGDLAVIAY-GDRSYFKKIY-TENGRLRLVSLNDKYEDIILDFPPAEDT 243

Query: 213 EW 214
             
Sbjct: 244 HI 245


>gi|209918882|ref|YP_002292966.1| putative phage repressor [Escherichia coli SE11]
 gi|209912141|dbj|BAG77215.1| putative phage repressor [Escherichia coli SE11]
          Length = 215

 Score = 79.8 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 64/209 (30%), Gaps = 15/209 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + ++ +   LT   L + +G+   +    ++   E     P ++++ K+  A  
Sbjct: 3   ESLGIRLKKLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNE-----PGSKALSKLAQALG 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T   LL    S   +  +      + YF    +  F       T    + +        
Sbjct: 58  TTESYLLYGVSSPELSFVQSNPGTKIPYFSWGDAISFLILEGEKTMGNVDRITTFFDVVE 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-----PRTGDIV 181
            +   ++          + S  P    G  +IL        G  + +           + 
Sbjct: 118 GDFAVSMPDD----TMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPDPLTNEPSMT 173

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            K L+   G+ + L  LN  Y    +   
Sbjct: 174 IKKLV-IDGKLVYLSPLNPRYQSSLLTPE 201


>gi|251778028|ref|ZP_04820948.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082343|gb|EES48233.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 248

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 69/248 (27%), Gaps = 37/248 (14%)

Query: 1   MTSFSHKKIWEAIDRMA----ERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           MT  S   + + I        ER     T   LA    L  +     +        ++PS
Sbjct: 1   MT-LSKTDLGKKIKEARKLKSERSGKKYTGQNLADDLKLSRSYIGDIESG-----RKYPS 54

Query: 55  TESIFKILA--------------------ATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
            E +  I                        + +   L   P           KEI  + 
Sbjct: 55  YELLTAIADACEVPFSFFNESNYYEKPKFNLDTSFNTLFAGPGKSHSPENIDLKEINNMD 114

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
              S         +      W    +              +     K +  SM   + +G
Sbjct: 115 LNYSFITIPIVGSIRAGHPIWAEDNLQGYIPVSKNSLKTDSIYFGLKVKGDSMNLEFDEG 174

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPV--DTVEMS 210
            ILI+     +  G+  +I+    +   K ++      I L+ +  N  +      ++  
Sbjct: 175 TILIVEKTPCIENGEIGVIRINGFEATVKKVV-LNDDMITLIPMSNNPEHIPNMYNLKTD 233

Query: 211 DIEWIARI 218
           DIE I ++
Sbjct: 234 DIEIIGKV 241


>gi|219854981|ref|YP_002472103.1| hypothetical protein CKR_1638 [Clostridium kluyveri NBRC 12016]
 gi|219568705|dbj|BAH06689.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 829

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 12/101 (11%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             ++       +    +    K +  SM       GD++++      +  D + +     
Sbjct: 723 YEDLLRLPVHWFNNNEEHFVLKVKGDSMIEANIDNGDLVVIKKQNAADNRDIVAVAIDME 782

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K    + G ++ L+  N  Y    V  + ++ +  ++
Sbjct: 783 NATLKRF-RKMGDTVLLIPENEEYEPIQVRSNQVKILGIVV 822


>gi|120612752|ref|YP_972430.1| putative phage repressor [Acidovorax citrulli AAC00-1]
 gi|120591216|gb|ABM34656.1| putative phage repressor [Acidovorax citrulli AAC00-1]
          Length = 248

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 61/224 (27%), Gaps = 24/224 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I R     NLT    AR+  L   +  K +R         P    + ++    +  
Sbjct: 31  LGDRIRRCR--GNLTREEFARRLELHINTVGKFERGLTV-----PDAFVLLRMAEVGSCQ 83

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPH 127
           +  LL               +        S             G+  +  V       P 
Sbjct: 84  VQWLLTGEE-----PTPSVPKSIRAIEVGSYVFVPHFDVQLSAGHGVFADVETVIAMRPF 138

Query: 128 NGIYAIQT------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +  +  Q                 SM P  R  D  +L+        + +      G ++
Sbjct: 139 DVKFVRQELGISHDDLALVSVVGNSMEPYLRSRDTTLLDRRANDVGAEGIHAIRLDGALM 198

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILW 220
            K +    G+ + + S N  Y    V        D   + R+ W
Sbjct: 199 LKFVQRLPGKVLRVSSANQDYAPFEVTGNEEAERDFAVLGRVRW 242


>gi|284029144|ref|YP_003379075.1| SOS-response transcriptional repressor, LexA [Kribbella flavida DSM
           17836]
 gi|283808437|gb|ADB30276.1| SOS-response transcriptional repressor, LexA [Kribbella flavida DSM
           17836]
          Length = 228

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 54/205 (26%), Gaps = 27/205 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++I  AI     RH  +PS   +    GL   +S ++      E               
Sbjct: 30  QQRILVAIRDWVVRHGYSPSTRQIGEAVGLRSASSVSRHLASLEEK-------------- 75

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                       L                     P        + +    +  + + +P 
Sbjct: 76  GFLQRGASMSRQLDVRLFLQDTASRAVADDSVSVPVVGDIAAGTPISAVEHLDDQLTLPR 135

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             +        +      + +  SM+      GDI+++    + + G  +       +  
Sbjct: 136 GLTG-------RGTVFGLRVRGESMIDAAICDGDIVVVRQQSEAHSGQIVAAMID-DEAT 187

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT 206
            K +  RR   + L   N  Y V  
Sbjct: 188 VK-VYRRRNGHVYLEPRNPDYEVID 211


>gi|163814064|ref|ZP_02205456.1| hypothetical protein COPEUT_00217 [Coprococcus eutactus ATCC 27759]
 gi|158450513|gb|EDP27508.1| hypothetical protein COPEUT_00217 [Coprococcus eutactus ATCC 27759]
          Length = 206

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 55/218 (25%), Gaps = 29/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I E I          PS   + +  GL  TS                S  +    L
Sbjct: 9   KQNEILEYIKEEQLSKGYPPSVREICKAVGLKSTS----------------SVHAHLASL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +    +       ++  P           +  T N  +   VP 
Sbjct: 53  EENGYIRRDPTKPRAIEIIDDDFALSRREVVNIP-IVGQVAAGQPILATQNIMDYFPVPP 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               +        Q    + +  SM+ +    GD+LI+      +  D ++         
Sbjct: 112 EYIHNTN-----NQTFMLRVKGESMINIGINDGDLLIVEQCSSASNRDIVVALI-EDGAT 165

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K         I L   N       VE  D   + +++
Sbjct: 166 VKRYFK-ENGHIRLQPENDYMDPIIVEHCD--ILGKVI 200


>gi|332875243|ref|ZP_08443075.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
 gi|332736500|gb|EGJ67495.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
          Length = 227

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 57/197 (28%), Gaps = 10/197 (5%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           + +A    +   S  +       G  +     ++             L           +
Sbjct: 26  TEMAEFCKVSKASVGQWFN----GPTKELDGSNLTLAAEFLGVNHKWLAGERAPMLLDKK 81

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
                +             +          ++ V  P   +      A +        Q 
Sbjct: 82  SDANVVFNNDEISKIPVLDYVQAGLFNSVGYDGV-NPIGETYTTYKSAKEKSVFSLTVQG 140

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR----GRSI-DLMSLN 199
            SMLP ++ GD+L +++A+    G  ++ +    +   K          GR I +L+ LN
Sbjct: 141 DSMLPDFKPGDLLTIDTALMPQPGSFVVAQNGDYEATFKKYRVIGYDDFGREIFELVPLN 200

Query: 200 CCYPVDTVEMSDIEWIA 216
             YP  +    +I  I 
Sbjct: 201 PDYPTLSSLNHNISIIG 217


>gi|294085815|ref|YP_003552575.1| prophage MuMc02-like, peptidase, family S24 [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665390|gb|ADE40491.1| prophage MuMc02-like, peptidase, family S24 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 253

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 14/212 (6%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           LT    +R  G +    ++    G            +  IL     T+     LP     
Sbjct: 38  LTLKQASRAIGRNDAYLHQYLNRGSPRHLPEAIRYQLAAILGVDQATLAHHDSLPKGARN 97

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----------WNTVGVPEIRSPHNGIY 131
                           + S   F       G               +  P          
Sbjct: 98  ADISHTATNSAPLGLQTMSSVPFLDIHASAGGGTLVDASADTATAALAFPRSWLRKISP- 156

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-- 189
           +             SM P+   GD ++L++         + I      +VAK +      
Sbjct: 157 SKTDALKLITISGDSMAPVLEHGDTVMLDTDQTRPTPPGIFILHDGLGLVAKRIELVPST 216

Query: 190 -GRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
             +++ + S N  Y      + +++ I R++W
Sbjct: 217 SPQTLRICSENQAYTNYQRTIDEVQIIGRVVW 248


>gi|291459076|ref|ZP_06598466.1| repressor LexA [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418330|gb|EFE92049.1| repressor LexA [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 228

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 68/224 (30%), Gaps = 33/224 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTE 56
           MT      +++ +    +  N  PS   + R  GL  TS  F+        G  R     
Sbjct: 25  MTEM-QAAVFQYLKAHVKEKNYAPSVRDICRAVGLKSTSSVFSYLNDLEAMGLIRK---- 79

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                   T+    Q+L L         ++  ++PLL    +G         F   N  +
Sbjct: 80  ------DPTHPRAIQILGLNQDAREEGGRELVQVPLLGTVAAGQPI------FAEENITD 127

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
              +P    P+  I            +  SM+      GD +I+        G+ ++   
Sbjct: 128 YYPIPVDMLPNQRI-------FMLNVKGDSMINCGILSGDRVIVAQQNSCENGEIVVALI 180

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  K     +   I L   N       V   + E + +++
Sbjct: 181 D-DSATVKRFYREKD-YIRLQPENDSMSPILV--ENCEILGKVI 220


>gi|293402310|ref|ZP_06646447.1| LexA repressor [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304157|gb|EFE45409.1| LexA repressor [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 194

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 37/213 (17%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I       +L+   +    G+  ++  + +    +   +      + K+       +   
Sbjct: 7   IRYYRASEHLSLEAIGDYVGVAKSTVKRWESGESKNIPQA----KLEKLSELFGINV--- 59

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                          +  P+L +  +G   F    +      +  V   E          
Sbjct: 60  ---------EACLNNQIKPILGYVKAGYDLFAQENLL----GYEEVTRKE---------- 96

Query: 133 IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            +  D   K Q  SM       GD++ + S   VN G+  ++     ++  K +I +   
Sbjct: 97  ARQGDYYLKVQGDSMNGSRIYDGDLVYVKSCSDVNSGEIAVVLVDRQEVTIKKIIKKED- 155

Query: 192 SIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219
           S+ L++ N  Y        D     I+ + ++L
Sbjct: 156 SLLLVASNPTYEPRLFHGEDLRNGRIQILGKVL 188


>gi|126641192|ref|YP_001084176.1| S24 family peptidase [Acinetobacter baumannii ATCC 17978]
          Length = 225

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 19/228 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M    +K   + ++ + +  +    T + L    G+      +        + R    ++
Sbjct: 1   MEDAKYKDFADRLNALMKAKDSPIKTINELKNAIGVSYEMARRYTLGSA--KPRIEKLQT 58

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  I      +         ++   ++K   E   +      + G F        +    
Sbjct: 59  LADIFGV-EISYLDHGTKLDNNIDLSDKVGFEGRRVPVISWVAAGSFTPIETVLKDTEIE 117

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIK 174
             +P  +                K    SM P +  GD + +N  IQ       D +++ 
Sbjct: 118 EYLPPNKR-------CGKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVA 170

Query: 175 PRTG-DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219
                +   K LI     +   L  LN  +P   +++  D   + +++
Sbjct: 171 CAGDSEATFKRLIIEGEGTSKFLEPLNPDWPDKIIKLSEDCRLVGKVV 218


>gi|78356205|ref|YP_387654.1| transcriptional regulator [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218610|gb|ABB37959.1| transcriptional regulator, putative [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 270

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 56/265 (21%), Gaps = 55/265 (20%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S  ++ E ++    R       +A  AG+   +    K        R+PS  ++ ++   
Sbjct: 9   SELRMQEYVEHAISRLG-GVREVAVAAGVSRRTVYAWKNGE-----RFPSRSNLNRLSGV 62

Query: 65  TNE------------------------------------TICQLLDLPFSDGRTTEKKEK 88
                                                                       
Sbjct: 63  LMRCAPSESPVPEFPAADGRESAAGLGVHENDGTEYGRRAAFGATGAAAHAAHPLHDFSD 122

Query: 89  EIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVP-EIRSPHNGIYAIQTQDTRHKT 142
              L                   G          V                 +     + 
Sbjct: 123 MPDLRGVLDEFVFVSKADARPSAGGGSLQTGAENVERHAFRLDWLLSKTHDTSSLRLMEV 182

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC- 201
              SM P    GD +++N        D++ +     +I  K         +     N   
Sbjct: 183 MGRSMEPTLHNGDDVLVNEGDTYLVEDKVYVVRVQDEIYIKRFAR-TPGRLLFRGDNRDL 241

Query: 202 -YPVDTVEMSDI----EWIARILWA 221
            Y    ++  D+      I R++WA
Sbjct: 242 AYQDIEIDPQDVSCDWTVIGRVIWA 266


>gi|270262714|ref|ZP_06190985.1| transcriptional repressor [Serratia odorifera 4Rx13]
 gi|270043398|gb|EFA16491.1| transcriptional repressor [Serratia odorifera 4Rx13]
          Length = 234

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 58/230 (25%), Gaps = 28/230 (12%)

Query: 18  ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
            R  +  +  A        + ++      E  +R        +I A  N           
Sbjct: 5   ARQGVNQNEFAILVESSAPTLSQI---TGEKSSRNLGDNLARRIEAKLNLPKGWFDVFHE 61

Query: 78  --------------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                K                       F  G+    +   E 
Sbjct: 62  KQLVRPFDNVAAESDFQPARLKPVVWEDTEQDKEEFVEIPLLDIDFSAGDGCYEIVDREE 121

Query: 124 RSPHNGIYAIQTQDTRH------KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            S     Y +             +   +SM P  + GD++ +N+        +       
Sbjct: 122 FSLIFRRYYLHKMGVAVNAARIIRISGSSMEPRLQDGDVVGINTDDTRIREGKTYAIRHG 181

Query: 178 GDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDIEWIARILWAS 222
             +  KVLI +    + + SLN   Y  + +        +  + R+ W+S
Sbjct: 182 NLLRVKVLIEQPDGGVTIRSLNREEYQDEHLSYAQRKDQLVVLGRVFWSS 231


>gi|296135719|ref|YP_003642961.1| transcriptional repressor, LexA family [Thiomonas intermedia K12]
 gi|295795841|gb|ADG30631.1| transcriptional repressor, LexA family [Thiomonas intermedia K12]
          Length = 243

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 60/218 (27%), Gaps = 15/218 (6%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPT-----SFNKSKRFG----IEGRNRWPS 54
            ++I + I          P  + +A K G               R G      G +R   
Sbjct: 12  QQEILDLITASVRELGYPPTRAEIAAKLGFRSANAAEDHLQALARKGVIELTPGASRGIR 71

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                +  + +  T+ +                     L  P +        G    G+ 
Sbjct: 72  ITESQR-ASPSMTTLGKTSGAMGGRASGLRADLSHGLQLALPGAEQLCLPLVGRVAAGHP 130

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
                  E     +        D   K +  SM       GD+L + S+     G  ++ 
Sbjct: 131 ILAQEHIEQTLNVDPGAFSVRPDYLLKVRGMSMRDAGILDGDMLAVKSSQTAQSGQIVVA 190

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           +    ++  K L   +   I+L+  N  +    V+ S 
Sbjct: 191 RI-GDEVTVKRL-RLQADHIELLPANPEFAPIRVDASQ 226


>gi|163748808|ref|ZP_02156060.1| LexA repressor [Shewanella benthica KT99]
 gi|161331582|gb|EDQ02387.1| LexA repressor [Shewanella benthica KT99]
          Length = 205

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 58/214 (27%), Gaps = 35/214 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A++ G                     + E
Sbjct: 1   MRPLTPRQAEILELIKRNISDTGMPPTRAEIAKRLGFKSA---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                          + I L+        G    G    G    
Sbjct: 46  HLKALAKK-------------GRIEIIPGTSRGIRLIQAAEPEDLGLPLIGQVAAGEPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +   +GD+L ++   Q   G  ++ + 
Sbjct: 93  AEEHIEQHYKVDPSMFSPCADFLLRVHGDSMKDIGILEGDLLAVHKISQAKNGQIVVAR- 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K    + G  + L + N  Y    V++
Sbjct: 152 VEDDVTVKRFEKK-GSMVYLHAENENYAPIVVDL 184


>gi|52081939|ref|YP_080730.1| phage-like protein [Bacillus licheniformis ATCC 14580]
 gi|52005150|gb|AAU25092.1| hypothetical phagelike protein [Bacillus licheniformis ATCC 14580]
          Length = 212

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 20/217 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I    ++ N++   LA+K   +  +  + +   I+        E + K L  T   
Sbjct: 3   VGERIRSRRKQLNMSVDQLAQKLKKNRATVYRYESNEIDNMPLTV-LEPLAKALNVTPAY 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +            +TE  +      Y+P   S G          N    + +P+      
Sbjct: 62  LMG--------WESTEPVQLSTKYPYYPIGISAGLPLCIDSIDENNVEYILIPDNL---M 110

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGDIVAKVLI 186
           G +A +      +    SM  +     ++ +       +  GD ++     GD   K   
Sbjct: 111 GKWAGRKDIFMMRINGDSMNRIMPHDSLIAVRPVPLSNLRDGDIVVY-SDGGDYAVKRFY 169

Query: 187 SRRGRSIDLMSLNCC--YPVDTVEMS--DIEWIARIL 219
            R  + I     +    +          D+    +++
Sbjct: 170 RREDKVI-FRPDSSDLNFTDYVTSADNIDLRIHGKVV 205


>gi|325453295|gb|ADZ13598.1| phage repressor protein [Cronobacter phage ENT39118]
          Length = 232

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 66/229 (28%), Gaps = 24/229 (10%)

Query: 2   TSFSHKKIWEAIDRMA-------ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
              S +++ +A +R+        +   L+   LA + G+  ++  +          +  S
Sbjct: 4   KPLSDEQVLDA-ERLRRIYNEKKKDLGLSQEVLAERLGISQSAVAQFLAGKNALNMKRAS 62

Query: 55  --TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
              E +   + A + ++                            S   G +        
Sbjct: 63  EFAEVLQVPIDAFSPSLADEAKQIAKSNVVYAGNYVPGRKYPVISSVQAGSWCE------ 116

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCG 168
                  + ++         IQ        +  SM         +G  ++ ++  +   G
Sbjct: 117 -AVEAYTLKDVDQWLESDAHIQGDGFWLLVEGDSMTSPAGLSIPEGTYVLFDTGREPING 175

Query: 169 DRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           + ++     + +   K L+   G    L  LN  +P+  +  +    I 
Sbjct: 176 NLVVAKLTDSNEATFKKLVIDSGHRY-LKGLNPAWPMIPINGN-CRIIG 222


>gi|254785997|ref|YP_003073426.1| LexA repressor [Teredinibacter turnerae T7901]
 gi|259494479|sp|C5BIH2|LEXA_TERTT RecName: Full=LexA repressor
 gi|237685540|gb|ACR12804.1| LexA repressor [Teredinibacter turnerae T7901]
          Length = 200

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 62/217 (28%), Gaps = 39/217 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++I + I          P  + +A   G        +    ++   R  + E
Sbjct: 1   MIKLTARQQQILDLIRDHIAETGYPPTRAEIAEILGFKSA---NAAEEHLKALARKGAIE 57

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            I                          +  +   +    P        S +    +  +
Sbjct: 58  MIA----------------------GASRGIRLPEVQSGIPLVGRVAAGSPILAQEHIED 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +P         +     D        SM  +    GD+L ++   QV  GD ++ + 
Sbjct: 96  YCDIPHN-------FFSPKADFLLTVHGMSMKDIGILDGDLLAVHKTDQVRNGDIVVARI 148

Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSD 211
              ++  K     R R  ++L   N  + V  V++ D
Sbjct: 149 D-NEVTVKRFKRERNRAQVELWPENPDFNVIEVDLRD 184


>gi|127511061|ref|YP_001092258.1| LexA repressor [Shewanella loihica PV-4]
 gi|166224647|sp|A3Q951|LEXA_SHELP RecName: Full=LexA repressor
 gi|126636356|gb|ABO21999.1| SOS-response transcriptional repressor, LexA [Shewanella loihica
           PV-4]
          Length = 205

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 60/214 (28%), Gaps = 35/214 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I + I R      + P  + +AR+ G                     + E
Sbjct: 1   MRPLTPRQAEILDLIKRNIADTGMPPTRAEIARRLGFKSA---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                          + I L         G    G    G    
Sbjct: 46  HLKALAKK-------------GCIEIMPGTSRGIKLTQEEEPEDLGLPLIGQVAAGEPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   + +  SM  +   +GD+L ++   Q   G  ++ + 
Sbjct: 93  AQEHVEQHYQVDPSMFRPSADFLLRVRGDSMKDIGILEGDLLAVHKVEQARNGQIVVAR- 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K    R G ++ L + N  Y    V++
Sbjct: 152 VEDDVTVKRFEKR-GSTVYLHAENEEYSPIVVDL 184


>gi|319763314|ref|YP_004127251.1| lexa repressor [Alicycliphilus denitrificans BC]
 gi|330825509|ref|YP_004388812.1| SOS-response transcriptional repressor, LexA [Alicycliphilus
           denitrificans K601]
 gi|317117875|gb|ADV00364.1| LexA repressor [Alicycliphilus denitrificans BC]
 gi|329310881|gb|AEB85296.1| SOS-response transcriptional repressor, LexA [Alicycliphilus
           denitrificans K601]
          Length = 224

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 63/214 (29%), Gaps = 16/214 (7%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              +   ++I + I     R    P+     A L   S N ++             +++ 
Sbjct: 5   PKLTARQQQILDLIQTAIARTGAPPTRAEIAAELGFKSANAAEEH----------LQALA 54

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPL-LYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +       +          +        +     L  P          G    G+     
Sbjct: 55  RKGVIELVSGTSRGIRLCGETVRNINAVRGTQFSLPIPGLSQLTLPLIGRVAAGSPILAQ 114

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              +      G       D   K +  SM       GD+L + +  +   G  ++ +   
Sbjct: 115 EHVDQTYTVEGSLFAHKPDYLLKVRGMSMRDAGIMDGDLLAVQATREARSGQIIVAR-LG 173

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            D+  K L  R G +I+L+  N  YPV  VE  +
Sbjct: 174 DDVTVKRL-RRTGSAIELLPENPDYPVIRVEPGE 206


>gi|225016686|ref|ZP_03705878.1| hypothetical protein CLOSTMETH_00595 [Clostridium methylpentosum
           DSM 5476]
 gi|224950545|gb|EEG31754.1| hypothetical protein CLOSTMETH_00595 [Clostridium methylpentosum
           DSM 5476]
          Length = 192

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 51/221 (23%), Gaps = 39/221 (17%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT+   ++I+  I +  +   + P+   +    G+  TS                     
Sbjct: 1   MTNQKLEQIYNYIKQRCQE-GIPPTIREICGALGIKSTS--------------------- 38

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                               +    EK       L  P   +      G    G     +
Sbjct: 39  ----------TAHKYVGQLVEMGAIEKDPNLTRTLKIPHMNTALVPVIGKITAGQPITAI 88

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E   P    ++   Q      Q  SM       GD++I+        GD +      
Sbjct: 89  EQIEGYIPFTPPHSADKQLFALNVQGDSMIEAGIFDGDVVIVEQTPVARDGDIVAALID- 147

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                K           L   N            +  + ++
Sbjct: 148 DSATIKRFYK-ENGGYRLQPENSTMDPIY--TDTLSILGKV 185


>gi|148547213|ref|YP_001267315.1| putative phage repressor [Pseudomonas putida F1]
 gi|148511271|gb|ABQ78131.1| putative phage repressor [Pseudomonas putida F1]
          Length = 289

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 54/211 (25%), Gaps = 21/211 (9%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           L+P   A+ A          +    +        + + +      E   Q L     +  
Sbjct: 83  LSPGEHAQAA---------VEPGDNKLSAADLVKQMLARSGKGIAEETRQRLLAAAQEPA 133

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI----------RSPHNGIY 131
                E E                      G        PE+                 +
Sbjct: 134 DATLLEAEPLRPGLVGDEVWIAHYDVRAAMGGGQIPHDYPEMFKDVRVSPSHLRELGVTF 193

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
           +             SM P  R  D LI++ +I+   GD +        I  K L      
Sbjct: 194 SEHHHLKMVTGWGQSMEPTIRHRDPLIVDVSIREFVGDGIYFFSWGDHIYIKRLQIADED 253

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220
             +++S N  +    +   +    AR+  +W
Sbjct: 254 HFEMISDNSRHKDRMIRREETYIQARVLLVW 284


>gi|298206777|ref|YP_003714956.1| transcriptional regulator [Croceibacter atlanticus HTCC2559]
 gi|83849409|gb|EAP87277.1| transcriptional regulator [Croceibacter atlanticus HTCC2559]
          Length = 240

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 69/216 (31%), Gaps = 22/216 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + +    +   +A K  +  ++++  +              ++ K+   +   
Sbjct: 4   IGQRIKSLRKEKKYSQQFIAEKLNISQSAYSLIESAHNNVMI--GHVLTLSKLYDVS--- 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                 L           E          + +G   +     + ++++   +P       
Sbjct: 59  --TDFILKGETNLIHMNIENGFIPFINVEAVAGNLNELQGAHSQSEYDRYRIPG------ 110

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGDIVAKVLI 186
             +   +     + +  SM P +   DILI  +   ++    + L++      ++ K + 
Sbjct: 111 --FKSSSNHLLFEVEGDSMTPTFYPNDILICEAQHSISDVADNSLVVIGTEKGLLTKRVK 168

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWI----ARI 218
              G    L S N  Y    +E  +I+ I     ++
Sbjct: 169 KEYGYCY-LESDNKHYSPIKIENEEIKAILSIKGKV 203


>gi|253577871|ref|ZP_04855143.1| transcriptional repressor [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850189|gb|EES78147.1| transcriptional repressor [Ruminococcus sp. 5_1_39BFAA]
          Length = 206

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 51/218 (23%), Gaps = 30/218 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++I + I          P+   +     L  TS                S  S  + L
Sbjct: 9   KQQEILDYIKNEILNRGFPPAVREICEAVNLKSTS----------------SVHSHLEAL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            ++  P          G    G     V   E
Sbjct: 53  EKNGYIRRDATKPRAIEIIDDNFNLVRREVVNVP--------IIGTVAAGQPLLAVENIE 104

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    +   +Q    K +  SM+      GD +++        GD ++         
Sbjct: 105 GYFPIPAEFMPNSQSFLLKVKGESMINAGIFDGDQVLVKQQSTAEDGDIVVALID-DGAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K     +     L   N       V    ++ + ++ 
Sbjct: 164 VKTFHKEK-GYYRLQPENDTMEPILVHEG-LQILGKVF 199


>gi|66395390|ref|YP_239683.1| ORF020 [Staphylococcus phage 53]
 gi|62635740|gb|AAX90851.1| ORF020 [Staphylococcus phage 53]
          Length = 239

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 32/236 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I     + NLT   L  K      + +  +        R P  + +F+I    N +
Sbjct: 10  IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGY-----RTPKQDDLFEIAHILNIS 64

Query: 69  ICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGG---------------FFDSG 107
           I  L     +               ++  +L +                           
Sbjct: 65  IDDLFPTRNNKKNDITSIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKESKLVSYIT 124

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              TG         +I          +T    D        SM P+ ++G    +     
Sbjct: 125 CGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDS 184

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +++
Sbjct: 185 IKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 238


>gi|229135297|ref|ZP_04264092.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196]
 gi|228648166|gb|EEL04206.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196]
          Length = 242

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 68/229 (29%), Gaps = 18/229 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     K + + I    +   +T   L  + G    + +  +    E      +  +I  
Sbjct: 15  MKQNISKYVGQQIKHYRKLKKMTQKELGLRIGKKHNTISSYENGTNE--PEQDALFAIAN 72

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L  +   +      P++  + T     E    YFP S S G        + N+   + +
Sbjct: 73  ALDVSINDLFPSTMEPYTITKETTSIVAESQYNYFPTSISAGLPHCIDSISDNELEKISI 132

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--QVNCGDRLLIKPRTG 178
           P       G ++        +    SM  +     I+++       +  GD ++     G
Sbjct: 133 PNSL---MGKWSGNKDVFVTRVNGDSMNRIIPHCSIIVVKKVELSDLKNGDIVV-FSNGG 188

Query: 179 DIVAKVLIS-RRGRSIDLMSLNCCYPVDTVE-------MSDIEWIARIL 219
           D   K     +    +        Y     +         +++   +++
Sbjct: 189 DYSVKRFFHDKENDRVIFRPD--SYDNRFFDYTVSYENAKNLKIHGKVV 235


>gi|317505686|ref|ZP_07963583.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663200|gb|EFV02970.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 226

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 8/219 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRNRWPSTESIFKILAATNE 67
           I E I    +   +T +   R  G+   SF KS K  G  G ++  +  S++  L++   
Sbjct: 2   ILERIKEYIDCKGITVAAFERSIGMSNASFGKSLKNRGAIGSDKIENILSVYTDLSSEWL 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIR 124
              +   L   + +  E  +             G          G   +  + V + +  
Sbjct: 62  LTGKGDMLKSDNEKLIEAHKTFGGSAKSSNKQKGIPLIPIDAVAGFPSDDNDGVYMEDCE 121

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--NCGDRLLIKPRTGDIVA 182
                 +  +  +   +    SM PLY  GDI+       +       + +   +   + 
Sbjct: 122 HYSIPEFEAKGANFLIRVSGDSMHPLYENGDIIACRKISDILFFQWGGIYVLDTSQGALV 181

Query: 183 KVLISRRGRS--IDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +         I  +S N  +    +  SDI  ++ I+
Sbjct: 182 KRVEEAEDDKESILCISENPRFKPFRLPKSDIRSLSTIV 220


>gi|167856784|ref|ZP_02479439.1| putative transcriptional regulator [Haemophilus parasuis 29755]
 gi|167852091|gb|EDS23450.1| putative transcriptional regulator [Haemophilus parasuis 29755]
          Length = 230

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 58/203 (28%), Gaps = 10/203 (4%)

Query: 21  NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA--TNETICQLLDLPFS 78
               +  ARK   +P+   +      +   +    +    IL                  
Sbjct: 21  GGNIADFARKIDKEPSYVARMLYPEGKPGAKPIGEKMAHHILHKFVLPLDWFNRDYDDEG 80

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
           +    E+    I +L    S   G     V       + +     +              
Sbjct: 81  ELIPFEEPSIVIDVLNVEASAGNGSTGDLV----EIVSKLHYVPEQFYLYFRGIDPENIR 136

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
               +  SM P +  GD++ ++ +I    GD + +     ++  K L    G  + ++S 
Sbjct: 137 VINIKGDSMAPTFSSGDMIFIDISIPYFDGDGVYVFTYKNNLYVKRLQ-MAGDHLIVISD 195

Query: 199 NCCYPVDTVEMSDIE---WIARI 218
           N  Y    +    IE      ++
Sbjct: 196 NETYKEWEINEESIEQLYIHGKV 218


>gi|303229090|ref|ZP_07315894.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516243|gb|EFL58181.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 216

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 23/222 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+ + I    +  NL+   +A++ G    T+  K +    E     P    ++++    +
Sbjct: 2   KLSDNIRYFRKLRNLSQDEIAKRLGYKSFTTIQKWETGMAE-----PPVGKLYELADILH 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +I  LL                   +    S            T +  N +    I   
Sbjct: 57  VSIMDLLKDNLDAEEALTVSTNFYHYVPASVSAG-------ALTTIDAINFMPTISIPDF 109

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDIVAK 183
             G YA             SM  + + G ++ + + I+   ++ GD ++     GD   K
Sbjct: 110 MMGRYAGNKNILLMAVNGESMNNVIQNGSVIAILTNIELLDIHDGDIVV-IKNGGDYTVK 168

Query: 184 VLISRRG-RSIDLMSLNCC--YPVDTVE---MSDIEWIARIL 219
              + +  +       +    +           D+  I +++
Sbjct: 169 RFYNDKQHQEFVFKPDSSDMAFRDIIFSYENTDDLYLIGKVV 210


>gi|317048368|ref|YP_004116016.1| XRE family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949985|gb|ADU69460.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 241

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 61/222 (27%), Gaps = 20/222 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +IW+A     E+  L     A   G     + ++             +TE+I K  A   
Sbjct: 20  QIWDAKK---EQLGLNQEKAADFFGFSTQAAISQFLNAKAP-----INTENILKFSALLE 71

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L                               + S    +  +  T    + +  
Sbjct: 72  VAPEELKPSIGPLLAHIRGTAAPQDNQRNEAKYEYPLYTSVQAGSFTETGTYTQQDAKDW 131

Query: 127 HNGIYAIQTQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLI-KPRTGD 179
                    +    +    SM       P + +G +++++   +V  GD  +       +
Sbjct: 132 VATTKKASEKAFWLEVSGHSMTAPPGGRPSFPEGILILVDPEQEVKPGDFCVAGIYNNSE 191

Query: 180 IVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARIL 219
           +  K  +     +  L  L  N  Y        +   I +++
Sbjct: 192 VTFKRFVW-EDGTPWLEPLNTNPRYQSIPCN-ENCRIIGKVV 231


>gi|331091111|ref|ZP_08339953.1| LexA repressor [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405333|gb|EGG84869.1| LexA repressor [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 205

 Score = 79.4 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 31/218 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I E I     +    P+   +     L  TS                S  S  + L
Sbjct: 9   KQSEILEYIKSEILKRGYPPAVREICEAVNLKSTS----------------SVHSHLETL 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           +            L+  P           +    N  +   +P 
Sbjct: 53  EKNGYIRRDPTKPRAIEIIDDMFNLTRRDLVQVP-MIGRVAAGEPLLAQENIEDYFPIPA 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P+N +Y         + Q  SM+      GD +++     V+ G  ++         
Sbjct: 112 ELMPNNQVY-------MLQVQGESMINAGILDGDYVLVEQCNTVSNGQMVVAL-VEDGAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K           L   N       V+  ++  + +++
Sbjct: 164 VKTFYKEE-GIYRLQPENDTMSPIIVQ--EVTILGKVI 198


>gi|322376771|ref|ZP_08051264.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. M334]
 gi|321282578|gb|EFX59585.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. M334]
          Length = 249

 Score = 79.4 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 80/217 (36%), Gaps = 21/217 (9%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGL-ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           ++ +I + I+ +A   N+  S L   K      S +  +      R   P  +   KI+ 
Sbjct: 46  TYPRIGK-IELLANYFNINKSDLIENKISTAQPSDSLLEEITNTARKLSPENK---KIVL 101

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            T+E + +  +   +      +  +     Y+  + S G   +G +    +   + +P  
Sbjct: 102 RTSEELLESQNEEETKENEVSEVIQLYSYDYYDHAASAG---TGQYLNDVRVERIELPVD 158

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                        D     +  SM P Y  GD++ + +++ +N G   +     GD   K
Sbjct: 159 IDA----------DFVIPIKGDSMEPDYHDGDLVFIQTSVDLNNGVIGV-FNYNGDAYIK 207

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            L+  + ++  L SLN  Y    +    D   I  ++
Sbjct: 208 QLVIDKDQAY-LHSLNPAYKDMPITPDTDFRIIGEVV 243


>gi|304310925|ref|YP_003810523.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [gamma proteobacterium HdN1]
 gi|301796658|emb|CBL44870.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [gamma proteobacterium HdN1]
          Length = 203

 Score = 79.4 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 57/223 (25%), Gaps = 36/223 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +    +I   I          P+    +  +  T   +S              E +
Sbjct: 1   MEKLTARQSEILNYIRTHIGETGYPPT----RMDIAQTFGFRSPNAAE---------EHL 47

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +                               L    + + G    G    G     V
Sbjct: 48  RALARK--------------GAIRMTPSASRGIQLVDDEAQAAGVPIIGEVAAGFPVLAV 93

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                             D   + +  SM       GD+L ++  ++ + G  ++ +   
Sbjct: 94  ENIRGYCAVPAELFTPRADFFLRVKGLSMKDAGILDGDLLAVHKTLEASNGQIVVARI-G 152

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIA 216
            ++  K L  R   +I L+  N  +    +   D    IE IA
Sbjct: 153 DEVTVKRLQKR-NNAIVLLPENPDFAEIKIPPHDESFAIEGIA 194


>gi|326800506|ref|YP_004318325.1| helix-turn-helix domain protein [Sphingobacterium sp. 21]
 gi|326551270|gb|ADZ79655.1| helix-turn-helix domain protein [Sphingobacterium sp. 21]
          Length = 256

 Score = 79.4 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 64/222 (28%), Gaps = 18/222 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +  +   T    A    +  +     +    E     P  E + K  +    
Sbjct: 3   NIASNLKYLRRKKGHTQQQFADLMEIKRSLVGAYEEDRAE-----PKYELLKKFASYYEL 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP-----PSGSGGFFDSGVFPTG--NKWNTVGV 120
           T+ +L++    D      K     +                        G  N +     
Sbjct: 58  TMDELVNEKIDDKWKPTPKGDSSSVRVLSITVNEDDRENIELVPVKASAGYLNGYADPDY 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRT 177
                     +  Q      + +  SMLP  + G ++I   +     V      +I  ++
Sbjct: 118 ISELPKFRLPFFKQGTYRAFELKGDSMLP-LQPGTVVICEYVEDWFDVKPNQTYVIISKS 176

Query: 178 GDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
             IV K +    +  + + L+S N  Y    VE  DI  I +
Sbjct: 177 DGIVYKRIAHKFKEEKGLKLLSDNKVYEPYWVETPDILEIWK 218


>gi|319955273|ref|YP_004166540.1| phage repressor [Cellulophaga algicola DSM 14237]
 gi|319423933|gb|ADV51042.1| putative phage repressor [Cellulophaga algicola DSM 14237]
          Length = 251

 Score = 79.4 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 68/222 (30%), Gaps = 16/222 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++ I +    +      T +  A   G+  T+    +R   +      S + + ++L   
Sbjct: 3   NEIILKRFIEIRRDLGFTQAEFAALIGVSNTT-ADIERGRTK-----LSGKVVTELLKQF 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 L +   S    T        ++    S                +          
Sbjct: 57  KINPLWLFNESDSKYIETSHTSVIPKVV-TVDSADRENMVLVNAKAAAGYPQNIADTSWY 115

Query: 126 PHNGIYAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPR 176
                + +             + +  SMLP  R G+ ++   +     V      ++  +
Sbjct: 116 QQLPAFDLPIPEFRNATYRGFQVEGDSMLPNLRPGEWVLAKAIEHIDDVTPNKIYVVVLQ 175

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              +V KV+      ++ L+SLN  YP   ++   I+ I ++
Sbjct: 176 DAVLVKKVIKKPNSNNVTLVSLNESYPPYEIKPFQIQEIWQV 217


>gi|188585438|ref|YP_001916983.1| LexA repressor [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350125|gb|ACB84395.1| LexA repressor [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 815

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 9/115 (7%)

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQ 164
              +   +    V +P+   P+             +    SM+     KGD +I+     
Sbjct: 704 ELKYAHQDIQGDVELPKEIVPN------PDNCFMLEVTGDSMINAGIDKGDYVIVQKQNY 757

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               D ++      +   K      G +I LM  N  Y    V   D+    +++
Sbjct: 758 AENLDIVVAVIDQ-EATLKKYSRM-GDTILLMPENKNYEPIIVSEEDLIINGKVI 810


>gi|317484230|ref|ZP_07943159.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Bilophila wadsworthia 3_1_6]
 gi|316924579|gb|EFV45736.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Bilophila wadsworthia 3_1_6]
          Length = 215

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 12/203 (5%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           T   LA   G+  ++ ++SK+ G      W        +          L          
Sbjct: 21  TQQELADVLGIKQSTISESKKRGTVP-PGWFLV-----LFEMRGVNPDWLKQGKGPIYLR 74

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
           T +  + +           G      + +    + V  P         YA   +    + 
Sbjct: 75  T-EDGRYMEPEPAATPLGRGVSLP-YYDSDRVQDGVWEPSGTIMLPEPYA-GKELRILRI 131

Query: 143 QDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              S  P  R+G  + ++++  + + G    +      +V K +      ++ L + N  
Sbjct: 132 TGDSFSPTVRQGAFVGVDTSCVRPSSGSIFAVSVPFEGVVIKRVFCDSD-TLLLRTDNPL 190

Query: 202 YPVDTVEMSDI-EWIARILWASQ 223
           +P  ++ +++    I R+ W  Q
Sbjct: 191 HPSMSIPLAEAGRLIGRVAWVFQ 213


>gi|291287285|ref|YP_003504101.1| transcriptional repressor, LexA family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884445|gb|ADD68145.1| transcriptional repressor, LexA family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 201

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 58/220 (26%), Gaps = 41/220 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT    KK  + I+     +  +PS   +A+  GL  TS                   S+
Sbjct: 1   MTDR-QKKFMQFIEDFIRDNGYSPSIREIAKGLGLSSTS-------------------SV 40

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K+L                         +   +       + G    G    G      
Sbjct: 41  KKMLDRL---------------TEKGLLNRSGSIARSIEMPNRGIPVVGRIVAGVPVEAE 85

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E     + +          K    SM       GD +++     +  G     +   
Sbjct: 86  ENIEGYMKLDRLTIRSGGHFFLKVDGDSMKDEAILHGDYVLIKPGPIITNGQIGAFRIN- 144

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIA 216
           G++  K    +    I LM  N  +    V E  D E I 
Sbjct: 145 GEVTLKTF-RQNAEGIYLMPANEAFEPIPVGEYDDFEVIG 183


>gi|255606333|ref|XP_002538548.1| conserved hypothetical protein [Ricinus communis]
 gi|223511638|gb|EEF23835.1| conserved hypothetical protein [Ricinus communis]
          Length = 331

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 11/220 (5%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T+ +  +    +       NLT   LA  AG+     +             P+      +
Sbjct: 113 TTLTAPQ---RVRAALGPLNLTAETLASVAGIGSDIASLWLAGQGP----DPTLIQAVAL 165

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                     +L    + G      ++  P+ +           + +   G  W  +   
Sbjct: 166 QNTYGVNSVWILKGKGAPGIAIRYDDEWRPVTFKNWHLVPVRGMAQLGDNGY-WAEMEYS 224

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E         ++       K +  SM P  + G+ ++L     +  GD +LIK + G ++
Sbjct: 225 EGYVATA---SLDKDAYALKCKGDSMKPRIKDGEYVVLEPNQPIAPGDEVLIKAKDGRVM 281

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
            K  +      I L+S N  +   +VE ++IE +  + W 
Sbjct: 282 VKEFVYEAQGKIYLLSTNEAHGKISVERANIEHMHYVGWI 321


>gi|330808694|ref|YP_004353156.1| transcription factor, LexA family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376802|gb|AEA68152.1| Putative transcription factor, LexA family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 205

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT+ + ++  I   I          PS   ++   G    S  +                
Sbjct: 4   MTTLTPRRTAILTFIRERIADQGQPPSLAEISEAFGFASRSVAR--------------KH 49

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +    A   E             +    +  ++P+L    +G          P G    
Sbjct: 50  VLALTEAGFIEVNPHQARGIRLLNQPPRPELLDVPVLGRVAAG---------LPIGADAE 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                  R   +     +  D   + Q  SM       GD++ +    Q   G  ++ + 
Sbjct: 101 VH----SRLMLDPAIFTKAPDYLLRVQGDSMIEDGILDGDLVGVQRTPQAANGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K      G  + L+  N  Y    VE   
Sbjct: 157 D-GEVTIKRFERI-GERVRLLPRNPAYQPIIVEADQ 190


>gi|190573722|ref|YP_001971567.1| LexA repressor [Stenotrophomonas maltophilia K279a]
 gi|190011644|emb|CAQ45263.1| putative LexA repressor [Stenotrophomonas maltophilia K279a]
          Length = 223

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 23/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I + I    E      + + +AR  G          +     +    + E    I 
Sbjct: 18  TQQAILQLIAERIESEGAPPSQTEIARAFGF---------KGVRAAQYHLEALEQAGAIR 68

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               +                 +K  E  L             +   P G    +     
Sbjct: 69  RIPGQAR-----GIRLMQAPPVEKLAEPDLPDSVLRLPVLGRVAAGLPIGADIGSDDF-- 121

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++     D   K Q  SM+      GD++ ++     + G  ++ +    +I 
Sbjct: 122 --VVLDRVFFSPAPDYLLKVQGDSMIDEGIFDGDLIGVHRTRDAHSGQIVVARID-DEIT 178

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 179 VK-LLKIAKDRIRLLPRNPDYKPIEVLPDQ 207


>gi|167033137|ref|YP_001668368.1| putative phage repressor [Pseudomonas putida GB-1]
 gi|166859625|gb|ABY98032.1| putative phage repressor [Pseudomonas putida GB-1]
          Length = 289

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 12/177 (6%)

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           + + +      E   Q L     +   T   + E                      G   
Sbjct: 108 QMLARSGKGIPEETRQRLLAAAQEPADTPLVKAERVRPGLVGDEVWIAHYDVRAAMGGGQ 167

Query: 116 NTVGVPEI----------RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
                PE+                 ++             SM P  +  D LI++ +I+ 
Sbjct: 168 IPHDYPEMFKDIRVSPSHLRELGVAFSEHHHLKMVTGWGQSMEPTIKHRDPLIVDVSIRE 227

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220
             GD +        I  K L        +++S N  +    +   +    AR+  +W
Sbjct: 228 FVGDGIYFFSWGDHIYIKRLQIADEEHFEMISDNSRHKDRMIRQEETYIQARVLLVW 284


>gi|229496464|ref|ZP_04390180.1| putative phage repressor [Porphyromonas endodontalis ATCC 35406]
 gi|229316692|gb|EEN82609.1| putative phage repressor [Porphyromonas endodontalis ATCC 35406]
          Length = 226

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 27/225 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I + +D       ++ S    K G+ P+       F   G+     ++ + KIL    
Sbjct: 9   ERILQFLD----EKGISKSLFFNKVGISPS------NFKGVGKKSSIGSDLVVKILTEYP 58

Query: 67  ETICQLLDLPFSDG------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           E   + L L   +       +     +KEI   + P  G             +  +    
Sbjct: 59  ELSPEWLMLGEGEMLRDPSKQAANDPKKEIIPSHTPQEGIPLIPIEAWAGALSGEDY--- 115

Query: 121 PEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIK 174
             I       Y + +    D     +  SM P Y  GDI+       +       ++ I 
Sbjct: 116 -SIMEYECERYVVPSFQDADFLITVRGDSMTPKYYSGDIVACRKVFLSDLWFQWGKVYII 174

Query: 175 PRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                 + K +       +I L+S N  Y    +    I  IA +
Sbjct: 175 DTNQGSLLKKVRRGSSEETITLVSENPEYEPFELRKDQIYNIAIV 219


>gi|15150328|gb|AAK85394.1|AF399932_1 LexA [Xanthomonas oryzae]
          Length = 213

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + +AR  G       +               E++ +  
Sbjct: 6   TQQAILALIAERIDADAVPPSQTEIARAFGFKGVRAAQYH------------LEALEQAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  T       P+             +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGQGGQTRAAAVSEPVRDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARLD-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|238796818|ref|ZP_04640323.1| Prophage repressor protein [Yersinia mollaretii ATCC 43969]
 gi|238719306|gb|EEQ11117.1| Prophage repressor protein [Yersinia mollaretii ATCC 43969]
          Length = 240

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 72/233 (30%), Gaps = 19/233 (8%)

Query: 2   TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++   + +  +     +   ++   +A + G+  ++ N+             + 
Sbjct: 4   KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNK 114
            +  K+L     +    L    +    +        L   P  S +  +        G+ 
Sbjct: 62  AAFAKVLNEPISSFSPSLAKELAKMAESLSISTRSGLKDKPTGSVANSYPLISWISAGSW 121

Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167
           +  +    + +I                   +  SM       + +G I++++   +   
Sbjct: 122 YEAIEPYTLRDIEIWPESTKNAHDSAFWLSVKGDSMTSPSGISFPEGMIILVDPEKEPMP 181

Query: 168 GDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++       +   K LI   G    L  LN  Y +  +  +  + +  ++
Sbjct: 182 GNFVIAKLTDDNEATFKKLIVDAGVKY-LKPLNPAYRLIELTGN-CKIVGVVV 232


>gi|329917931|ref|ZP_08276514.1| SOS-response repressor and protease LexA [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327544461|gb|EGF30015.1| SOS-response repressor and protease LexA [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 220

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 61/216 (28%), Gaps = 18/216 (8%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++I   I          P  + +AR+ G    S N ++              
Sbjct: 1   MIKLTARQEQILNLIRDAIINTGFPPTRAEIARELGFR--SVNAAEEHLQA--------- 49

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K     +    + + L  S      +++    +L  P          G    G+   
Sbjct: 50  LARKGAIEISPGTSRGIRLIKSAVELANERDSRQLVLPHPALMQLSLPLIGRVAAGSPIL 109

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            +   E     +        D   K +  SM       GD++ +  +     G  ++ + 
Sbjct: 110 ALEHVEATYQVDPSLFSAKPDYLLKVRGMSMRDAGIIDGDLIAVKKSDSARNGQIVVAR- 168

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K         I+L+  N  +    ++   
Sbjct: 169 LGDDVTVKRYHK-TDDLIELLPENADFKPIRIDPER 203


>gi|222823809|ref|YP_002575383.1| peptidase S24 [Campylobacter lari RM2100]
 gi|222539031|gb|ACM64132.1| conserved hypothetical protein, putative peptidase S24
           [Campylobacter lari RM2100]
          Length = 211

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 59/223 (26%), Gaps = 22/223 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTP---SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M      +I + +  + ++  +     S +A+   ++P +F   K          P  + 
Sbjct: 1   MQM---NEITDKLKFILQKEGIKNAKDSDVAKMLNINPDTFYSMKFRNSI-----PYKQI 52

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +            +               +   Y   +  GG         G   + 
Sbjct: 53  LHFLNERNININAFFYEDSLESNTPALDLNYNVLKYYDVNASMGG---------GALNDN 103

Query: 118 VGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           V   E+        +              SM P  +   + +++       G  +     
Sbjct: 104 VSFSEVIVDEKLSDFFGSKDCDIIPCIGDSMEPEIKDESLCLIDKNKSFKEG-GVFAVNT 162

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +  K +       + L S N  Y     +  D   + +++
Sbjct: 163 RDGLFIKQIFKSNKGGVYLHSFNLSYADVHYQNGDFLIVGKVV 205


>gi|291166135|gb|EFE28181.1| repressor LexA [Filifactor alocis ATCC 35896]
          Length = 207

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 56/221 (25%), Gaps = 38/221 (17%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTES 57
             K   + I          PS   + +  G   TS      N+ K    +G  R  S ++
Sbjct: 8   KEKSTLQYIANTVNEKGYPPSVREICKSVGFKSTSTAYACLNQLK---DKGYIRKDSVKT 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                                     E+           P        + +    N  + 
Sbjct: 65  RA-----------------LEVIDPIERMGFAKKNTVDIPIIGKVTAGTPILAVENVDDY 107

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           + + E             +    + +  SM+       DI+++      + GD ++    
Sbjct: 108 IPISEHWINS-------KEHFLLRVEGDSMINAGIYNNDIVLIEQCQTASNGDIVVALID 160

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
                 K     +   I L   N  Y        +I+ + +
Sbjct: 161 GEYTTIKRFFYEKN-RICLKPENEKYSPIF--SDNIKILGK 198


>gi|73541696|ref|YP_296216.1| LexA repressor [Ralstonia eutropha JMP134]
 gi|123732906|sp|Q46ZR1|LEXA_RALEJ RecName: Full=LexA repressor
 gi|72119109|gb|AAZ61372.1| SOS-response transcriptional repressor, LexA [Ralstonia eutropha
           JMP134]
          Length = 218

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 66/216 (30%), Gaps = 21/216 (9%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I          P  + +A + G              E   R  + +
Sbjct: 1   MATLTPRQQQIFDLIRNTIRNTGFPPTRAEIAAEFGFSSP-------NAAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++    +  I   +    S+             L             G    G+   
Sbjct: 54  GVIELTPGASRGIRLKVARSDSEMPDQFS-------LPVSGIMQLTLPLVGRVAAGSPIL 106

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +     +  D   + +  SM       GD+L +  A +   G  ++ + 
Sbjct: 107 AAEHIDRQYQVDASVFDERPDYLLRVRGLSMRDAGILDGDLLAVRKASEAPNGKIVVAR- 165

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K L  R   +I+L++ N  +P   V    
Sbjct: 166 LGDDVTVKRLQRR-DGAIELIAENPDFPNIMVTPGR 200


>gi|78047328|ref|YP_363503.1| LexA repressor [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035758|emb|CAJ23449.1| LexA repressor [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 213

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 53/210 (25%), Gaps = 21/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I   I    +   +  + + ++R  G       +               E++    
Sbjct: 6   TQQAILALIAERIDADGVPPSQTEISRAFGFKGVRAAQYH------------LEALEHAG 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                G  T                      +   P G    +     
Sbjct: 54  AIRRVPGQARGIRLAGQGAQTRTAPVSEAARDDVLRLPVLGRVAAGLPIGADIGSDDF-- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++   + D   K Q  SM       GD++ ++       G  ++ +    +I 
Sbjct: 112 --VVLDRVFFSPSPDYLLKVQGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARID-EEIT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 169 VK-LLKIGKDRIRLLPRNPDYAPIEVLPDQ 197


>gi|218768655|ref|YP_002343167.1| putative regulator [Neisseria meningitidis Z2491]
 gi|304386903|ref|ZP_07369164.1| transcriptional regulator [Neisseria meningitidis ATCC 13091]
 gi|121052663|emb|CAM09003.1| putative regulator [Neisseria meningitidis Z2491]
 gi|304339008|gb|EFM05101.1| transcriptional regulator [Neisseria meningitidis ATCC 13091]
 gi|319410887|emb|CBY91280.1| putative transcriptional regulator [Neisseria meningitidis WUE
           2594]
          Length = 234

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 64/220 (29%), Gaps = 29/220 (13%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
           P+    K  +  + F++  + G       P+ + + KI   T   +  LL    S     
Sbjct: 17  PADFYNKIDMSASGFSRVWKDGAI-----PTADYLIKIQEVTGCDLNWLLTGQGSPYMNK 71

Query: 84  EKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            +  +                                  G+ +       +       Y 
Sbjct: 72  GQAVEVRTHTDGTATDTLGNPINLDEFVFIPRYDVYAAAGHGYPAEDDKPLFCMAFRRYW 131

Query: 133 IQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           I+        + +    +  SM  +   GD +++N A      D L +      +  K +
Sbjct: 132 IENYVTRQLDKLSVIAVKGDSMEGVLNHGDNILVNHAETT-PRDGLYVIRIDNHLFVKQI 190

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILWA 221
                  + + S N  Y    ++++D    +  I R+ W 
Sbjct: 191 QKLP-GKLLVKSANPVYEPFEIDLTDDNQNVAIIGRVEWY 229


>gi|77459882|ref|YP_349389.1| putative prophage repressor [Pseudomonas fluorescens Pf0-1]
 gi|77383885|gb|ABA75398.1| phage repressor protein. Serine peptidase. MEROPS family S24
           [Pseudomonas fluorescens Pf0-1]
          Length = 232

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 66/228 (28%), Gaps = 19/228 (8%)

Query: 3   SFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              H   W E +       N+T   L  + G+               + R P    + ++
Sbjct: 11  MVPHMDKWIELVKAKMSELNVTQVELGERVGMSQGGIGHWLN-----KRREPGITQMNRV 65

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L A      ++              + E+PL                 P   + +     
Sbjct: 66  LKALGMEYLEV---AVVIREPQIDADDEMPLAQKYNPYFRYPVSEWNAPIEARESQPAYS 122

Query: 122 EIRSPHNGI---YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIK 174
             +         Y  +           +M         +G +++++ A++   G  ++ +
Sbjct: 123 SAKDKRRFELTDYHARGPAFWLTVMGNAMTAPTGQSIGEGMMILVDPALEAEPGKLVIAQ 182

Query: 175 P-RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
              + + + + LI   G+   L  LN  +    +   +   I  ++ A
Sbjct: 183 WPDSDEAIFRKLIEEGGQRY-LAPLNPTW-PKALLTDECRIIGVVVQA 228


>gi|320533325|ref|ZP_08034020.1| repressor LexA [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134461|gb|EFW26714.1| repressor LexA [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 293

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 23/224 (10%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRN--RWPSTESIF 59
           ++EA+      H   PS   +  + GL   S      +K +R G+  R+  R  + E + 
Sbjct: 74  VYEAVRGSIATHGYPPSLREIGEQVGLTSPSSVKHQLDKLERLGLVRRDPHRPRAMEVVA 133

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
              +    T         S   +      E       P        + +    +  + + 
Sbjct: 134 TDSSPRGRTGSSGGTAHVSSVDSPSIPGVEDGDAVAVPLVGRIAAGTPILAEQDITDVMA 193

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P   +        + +    +    SM       GD +++ S      G+ +       
Sbjct: 194 LPRRLTG-------EGELFMLEVHGDSMIEAAICDGDWVVVRSQPDAANGEVVAAMIEDV 246

Query: 179 D---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D      KVL  R      L+  N  YP    +      + +++
Sbjct: 247 DGASATVKVLSRR-DGHQWLLPRNSSYPPI--DGDHATIMGKVV 287


>gi|163867684|ref|YP_001608885.1| hypothetical protein Btr_0435 [Bartonella tribocorum CIP 105476]
 gi|161017332|emb|CAK00890.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 200

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 73/217 (33%), Gaps = 36/217 (16%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I   +  +     L+   LA +  +   + ++    G E   R    ++I ++  +  
Sbjct: 3   KNIIATLQVLQSEFGLSQKDLADRLNVTQATVSRWL--GSESDPRGSHRDAILELYKSLK 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                                  +PL+ +  +G     +    P  +   T+ +P     
Sbjct: 61  GYNQ---------------ITTLVPLMGYVGAGLEIDTNVEQIP-EDGLETIEIP----- 99

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNC---GDRLLIKPRTGDIVA 182
               + +  +      +  SM P+Y+ GD++++     +      GD +++         
Sbjct: 100 ----FDLPFEAIGFMVRGDSMYPVYKDGDLIVVKHLQTKPVSGYYGDEVVVLTEDNRRFI 155

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +       I L S N       ++ + I+W+  I+
Sbjct: 156 KQITRSLEG-IVLKSWNAD----PIKNAKIKWVGEIV 187


>gi|153009649|ref|YP_001370864.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
 gi|151561537|gb|ABS15035.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188]
          Length = 243

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 19/223 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI  A+    ++  L    +A+ AG+   +    +R          S E++  + +    
Sbjct: 21  KIGTALRTARKQRGLVMRDIAQAAGVSTGAVGNWERGANV-----MSMENLQAVASYLEI 75

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-----E 122
               L         +  +   +  ++        G  D  +       +           
Sbjct: 76  DPIAL-SKGNVKFLSETQPVSDAEIISDAGHIDTGPLDVEILGVAVGGDDGDFTLNGEVS 134

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT----- 177
             +      A   +         SM+P Y  G++L          GD ++I+        
Sbjct: 135 GYARRPAGIAHLRKVFALHVLSDSMVPRYEPGELLYCG-GRDAVSGDDVVIEMFPEQGES 193

Query: 178 -GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G    K L+ R    +     N        +   I+ + R++
Sbjct: 194 VGKAYIKRLVKRSKTELICKQYNPA-KELVFDPYAIKNMWRVI 235


>gi|237745859|ref|ZP_04576339.1| transcriptional repressor LexA [Oxalobacter formigenes HOxBLS]
 gi|229377210|gb|EEO27301.1| transcriptional repressor LexA [Oxalobacter formigenes HOxBLS]
          Length = 212

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 24/224 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   ++I   I +  E+    P+     A L   S N ++                
Sbjct: 1   MIKLTARQQEILNLISQSIEKTGFPPTRAEIAAELGFRSVNAAEEH-------------- 46

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L A        +    S G    + E +IP+      G       G    G+     
Sbjct: 47  ---LQALARKGVIEIVPGISRGIRLVQDEGKIPVSETGRQGQYAVPLVGRVAAGSPILAQ 103

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E     +        D   K +  SM  +   +GD++ +    +   G  ++ +   
Sbjct: 104 EHVEKTYQLDPALFSDKPDYLLKVRGLSMRDIGILEGDLIAVKKTEKARNGQIVVAR-LG 162

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL 219
            D+  K    + G +I+L+S N  +    V  E  D      ++
Sbjct: 163 DDVTVKRF-KKTGSAIELLSENPDFRPIRVNRESDDFRIEGLVV 205


>gi|193076849|gb|ABO11574.2| merops peptidase family S24 [Acinetobacter baumannii ATCC 17978]
          Length = 263

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 19/228 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M    +K   + ++ + +  +    T + L    G+      +        + R    ++
Sbjct: 39  MEDAKYKDFADRLNALMKAKDSPIKTINELKNAIGVSYEMARRYTLGSA--KPRIEKLQT 96

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  I      +         ++   ++K   E   +      + G F        +    
Sbjct: 97  LADIFGV-EISYLDHGTKLDNNIDLSDKVGFEGRRVPVISWVAAGSFTPIETVLKDTEIE 155

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIK 174
             +P  +                K    SM P +  GD + +N  IQ       D +++ 
Sbjct: 156 EYLPPNKR-------CGKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVA 208

Query: 175 PRTG-DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219
                +   K LI     +   L  LN  +P   +++  D   + +++
Sbjct: 209 CAGDSEATFKRLIIEGEGTSKFLEPLNPDWPDKIIKLSEDCRLVGKVV 256


>gi|840714|emb|CAA54479.1| lexA [Aeromonas hydrophila]
          Length = 207

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 33/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ E I        + P  + +A+K G    S N ++             +
Sbjct: 1   MKPLTPRQAEVLELIKANMNETGMPPTRAEIAQKLGFK--SANAAEEH----------LK 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K                  +      +   + L    P    G    G    G    
Sbjct: 49  ALAK--------------KGVIEIMPGTSRGIRLLLEEEEPLEESGLPLIGKVAAGESIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + Q  SM  +    GD+L ++   +V  G  ++ + 
Sbjct: 95  AQEHIESHYQVDPALFHPRADFLLRVQGMSMKNIGILDGDLLAVHKTQEVRNGQVVVARL 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L+  N       V++S
Sbjct: 155 D-EDVTVKRFQRK-GSQVWLLPENEELSPIEVDLS 187


>gi|315634519|ref|ZP_07889804.1| cro/CI family transcriptional regulator [Aggregatibacter segnis
           ATCC 33393]
 gi|315476746|gb|EFU67493.1| cro/CI family transcriptional regulator [Aggregatibacter segnis
           ATCC 33393]
          Length = 230

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 8/135 (5%)

Query: 96  PPSGSGGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
               +  F+       GN        +N   +   ++                    SM 
Sbjct: 93  SDEYAVPFYQDIRLAAGNGFADDIADYNNFKLRFSKATLRKQGVQYENAVCVIADGNSME 152

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV 207
           P+   G  + ++   +V    ++      G +  K+L +     I + S N   Y  +  
Sbjct: 153 PVIPDGTTVGIDMGNKVIRDGKIYAINHGGLLRIKLLYNMPNNQIKIRSYNTDEYDDEIA 212

Query: 208 EMSDIEWIARILWAS 222
            + D+  I ++ W S
Sbjct: 213 SLDDVSVIGKVFWYS 227


>gi|332531658|ref|ZP_08407554.1| LexA repressor [Hylemonella gracilis ATCC 19624]
 gi|332038884|gb|EGI75314.1| LexA repressor [Hylemonella gracilis ATCC 19624]
          Length = 230

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 15/209 (7%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I + I          P  + +A + G              E   +  + + + ++++
Sbjct: 16  QQQILDLIQSAIANTGAPPTRAEIATELGFKSA-------NAAEEHLQALARKGVIELVS 68

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            T+  I        +   ++     E                 G    G+        + 
Sbjct: 69  GTSRGIRLKGKALRATLSSSLSSIGEKVATGVAQL---ALPLVGRVAAGSPILAQEHVDQ 125

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +  D   K +  SM       GD+L + +A +   G  ++ +    ++  
Sbjct: 126 TYYVESSLFQRKPDYLLKVRGMSMRDAGIMDGDLLAVQTAKEAKNGQIVVAR-LGEEVTV 184

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K     +   ++L+  N  Y    VE  D
Sbjct: 185 KRYRRNKD-VVELLPENPDYQPIVVEPGD 212


>gi|237807486|ref|YP_002891926.1| putative phage repressor [Tolumonas auensis DSM 9187]
 gi|237499747|gb|ACQ92340.1| putative phage repressor [Tolumonas auensis DSM 9187]
          Length = 256

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 22/225 (9%)

Query: 15  RMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
           R+ E    L+      K G+  +   K            P+ +   +I  A N  +  L 
Sbjct: 31  RLEELKGDLSYKDFGGKVGISESGVRKYF----PPYFSMPAIDKFIQIANAHNVNLDWLA 86

Query: 74  DLPFSDGRTTEKKEKEIPLLYF---------PPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                  R  +         +            +   G+  +     G+      V    
Sbjct: 87  TGVGPKYRGDDYPIAVTSAKHSCVCKDEFDEEYALIPGYHINVSTGPGSALENETVKRHL 146

Query: 125 SPHNGIYAIQTQDTR----HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +        +  D         +  SM P    GD +++++         + +     D+
Sbjct: 147 AFRRKWLKFRGLDIARLAVVFAKGDSMEPTIHSGDSILIDTGHNQIEDGSIFVLRLGDDL 206

Query: 181 VAKVLISRRGRSIDLMSLNC-CYPVDTVEMS---DIEWIARILWA 221
            AK L      SI ++S N   Y    V      ++  I +++W 
Sbjct: 207 YAKRLQKNYDGSITIISDNKADYQPQVVPADHLYNLAVIGKVVWV 251


>gi|160892661|ref|ZP_02073451.1| hypothetical protein CLOL250_00191 [Clostridium sp. L2-50]
 gi|156865702|gb|EDO59133.1| hypothetical protein CLOL250_00191 [Clostridium sp. L2-50]
          Length = 207

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 59/220 (26%), Gaps = 33/220 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              +I E I          PS   + +   L  TS    +      +G  R   T+S   
Sbjct: 9   KQTQILEYIRHEILAKGYPPSIREICQAVDLKSTSSVHAQLSSLEAKGYIRRDLTKS--- 65

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                                     ++E+  +    + S G          N  +   V
Sbjct: 66  -------------RSIEIIDDDFSLTKRELVNIPIVGTVSCGQPI---LAEQNIEDYFPV 109

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P     +        Q    + +  SM+ +   + D++I+        G+ ++       
Sbjct: 110 PPEYIHNTN-----NQTFMLRVKGDSMINVGIYEKDLVIVEQCSSARNGEIVVALI-EDS 163

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I L   N       VE    E + R++
Sbjct: 164 ATVKTFYK-ENGYIRLQPENDYMDPILVEH--CEILGRVI 200


>gi|281491791|ref|YP_003353771.1| transcriptional repressor [Lactococcus lactis subsp. lactis KF147]
 gi|281375505|gb|ADA65015.1| Transcriptional repressor [Lactococcus lactis subsp. lactis KF147]
          Length = 252

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 67/241 (27%), Gaps = 36/241 (14%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + ++ +   LT S LA K G+   ++   ++     ++  P+ E + K+    +  I
Sbjct: 4   GQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQ-----KSTNPTLELLEKLADIYDLPI 58

Query: 70  CQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTG--------------NK 114
            +L+    ++         + +         +   F      T                 
Sbjct: 59  QELIKETDNNAEKQLIDNYRSLTGEQQESVINFTDFLIEQNKTEIINLKTYRRSSLDYAI 118

Query: 115 WNTVGVPEIRSPHN----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                +                      +   D   + +  SM P +    I    +   
Sbjct: 119 VEDEELSAGFGQSQSNTGGNYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLNTGF 178

Query: 165 VNCGDRL-LIKPRTGD--IVAKVLISRRGRSIDLMSLNCC--YPVDTVEMSD-IEWIARI 218
              GD   + +   G+  +  K +         + SLN    Y    +   D    I  +
Sbjct: 179 GRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPV 238

Query: 219 L 219
           +
Sbjct: 239 V 239


>gi|303245342|ref|ZP_07331626.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
 gi|302493191|gb|EFL53053.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
          Length = 226

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 68/229 (29%), Gaps = 11/229 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + +  +  I    +    T + +A   G+  +S + +K+      + W  T     
Sbjct: 1   MKPDTFEDAYARIQAATKTR--TQTEIANLLGIKQSSISDAKKKNTIP-DGWLITLYRAC 57

Query: 61  ILAATNETICQLL--DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            L        Q         +        +E    Y         +      + +    +
Sbjct: 58  GLEPDWILYGQEPASRRAGFNLADGVAGVRETANEYAAAPMRATVYAMARTNSESGS-WI 116

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRT 177
                  P     +        K  +  M P+ R G  + ++    ++  G+   +    
Sbjct: 117 RESLESIPLIESLSRP-HLLVVKMDNAGMEPVIRHGAYVGIDCDDVRLRTGEIYALDFPG 175

Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD--IEWIARILWASQ 223
             +V K ++     + + L+  N  +P   + +    I  I + +W  Q
Sbjct: 176 EGLVIKRVVRDLEAKRLSLLPDNPSHPAQHLPLETPGITPIGKAVWVIQ 224


>gi|160893916|ref|ZP_02074695.1| hypothetical protein CLOL250_01471 [Clostridium sp. L2-50]
 gi|156864294|gb|EDO57725.1| hypothetical protein CLOL250_01471 [Clostridium sp. L2-50]
          Length = 147

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 38/136 (27%), Gaps = 3/136 (2%)

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
             + E  +    P              G        P      +     +      K   
Sbjct: 4   SGKYEKHVCQIIPFRRAITVYENAVSAGTGNFLEDGPSRTLNIDEALLPENTSFGVKISG 63

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P +  GDI  +     V  G+  +     GD   K L       I L+SLN  Y  
Sbjct: 64  DSMEPEFHDGDIAWVVKQETVENGEIGI-FSLNGDAYIKKL-REDKEGIFLVSLNKKYAP 121

Query: 205 DTV-EMSDIEWIARIL 219
             V E    +   +++
Sbjct: 122 IRVSENDRFDVFGKVV 137


>gi|332701651|ref|ZP_08421739.1| CI repressor [Desulfovibrio africanus str. Walvis Bay]
 gi|332551800|gb|EGJ48844.1| CI repressor [Desulfovibrio africanus str. Walvis Bay]
          Length = 226

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 11/228 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IF 59
             S  ++ + I +       T   LA   G+  +S + +KR      + +        + 
Sbjct: 1   MTSFDEVLDRIKKATGAR--TQVELANLLGIRQSSISDAKRRNSVPADWYMKLYRSLGLN 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
               +       L          +  +           S            T        
Sbjct: 59  PEWLSDGIEPMYLKPGMGEAHVASMAEPAVGYGKSPARSRVVNVSSMTGASTKEGSWQPD 118

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTG 178
                +     Y  +      K + + M PL R+G  + L+    ++  G+   +     
Sbjct: 119 FISQLAIPETFY--RPTLLALKIEGSGMEPLIRRGAYVGLDMDQRRILSGELYGVHVPHE 176

Query: 179 DIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223
            +V K +          L S N  +P   +     D + + RI+W  Q
Sbjct: 177 GLVLKRVFFDAENNRFILRSENPIHPEQYLSPELKDKQLVGRIVWVLQ 224


>gi|312898672|ref|ZP_07758062.1| repressor LexA [Megasphaera micronuciformis F0359]
 gi|310620591|gb|EFQ04161.1| repressor LexA [Megasphaera micronuciformis F0359]
          Length = 205

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 52/213 (24%), Gaps = 38/213 (17%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWPS 54
           TS +   ++I + I +        PS   +  + GL  T + +       +     R PS
Sbjct: 6   TSLTTRQRQILDYIRKCVHTLGYPPSVREICSEVGLSSTSTVHGYLTDLEKLGFIRRDPS 65

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                ++L        +++                                 G    G  
Sbjct: 66  KNRKIELLDEGTWRSKKIVP----------------------------LPLVGTVRAGAP 97

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
                  E   P    +           +  SM      +GD+LI+        G  ++ 
Sbjct: 98  ITAEECVEDVYPFAAEFIGDDDCFMLTVRGDSMKDAGILEGDLLIVRQQSMARNGQIVVA 157

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
                +   K         I L   N  Y    
Sbjct: 158 LVD-DEATVKRYYFESD-HIRLQPENDDYEPII 188


>gi|83592056|ref|YP_425808.1| phage repressor [Rhodospirillum rubrum ATCC 11170]
 gi|83574970|gb|ABC21521.1| phage repressor [Rhodospirillum rubrum ATCC 11170]
          Length = 239

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT   H      +  + E    +    A+KAG+  ++     R         P+ +++  
Sbjct: 16  MTGIHHDGFSARVRSVLE--GQSARSFAQKAGIKSSTLQSILRGAR------PTVDNLVA 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK------ 114
           I +A+  +I  L           +   ++ P     P             TG+       
Sbjct: 68  IASASGVSIDWLATGGA---PPPKLSAQDAPDGAAHPDVFWIPRYDTQLATGDGAFADRA 124

Query: 115 --WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
              +T+ +                      +  SM      GD+ +++       G    
Sbjct: 125 VRTDTIALTAKVLGQGLEGLDLGNCLFFTVEGDSMAATLNDGDVALIHRETHWRDG---- 180

Query: 173 IKPRTGDIVAKVLISR--RGRSIDLMSLN-CCYPVDTVEMSDI----EWIARILWA 221
                 D     L         + +++ N   YP + +         E + R+ WA
Sbjct: 181 -LWAFSDGALCRLRRLQFSAEGVRVINDNREAYPPEFIPAHQWSLSHELVGRVRWA 235


>gi|121998520|ref|YP_001003307.1| SOS-response transcriptional repressor, LexA [Halorhodospira
           halophila SL1]
 gi|166224633|sp|A1WXU3|LEXA_HALHL RecName: Full=LexA repressor
 gi|121589925|gb|ABM62505.1| SOS-response transcriptional repressor, LexA [Halorhodospira
           halophila SL1]
          Length = 226

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 26/216 (12%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   ++I E I R        P  + + +  G                  R P+  
Sbjct: 1   MDTLTDRQREILELIRRSVAERGYPPTRAEICQSLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           ES  + LA       +                   P        + G    G    G+  
Sbjct: 44  ESHLRALARKGAIEMRRGASRGIRLTDAFAGAAPEPSP-ATDDPNAGLPVVGRVAAGSPL 102

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +        D   + +  SM       GD+L +    +   G  ++++
Sbjct: 103 LAEESIERYCQVDASLFSPPADYLLRVRGESMRDAGILDGDLLAVRRDTEARDGQIVVVR 162

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
               ++  K L       + L+  +  YPV  V   
Sbjct: 163 -LHDEVTVKFLER-CNGVLRLIPAHPDYPVIEVAAD 196


>gi|224825376|ref|ZP_03698481.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002]
 gi|224602297|gb|EEG08475.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002]
          Length = 192

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 5/181 (2%)

Query: 42  KRFGIEGRNRWPSTESIF-KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           KR G   ++ +   +++  ++       +   L    +     E    E   L    S  
Sbjct: 6   KRQGAGRKSAFGGDKTVAMRVPEPLKPVLEAWLQEYRAIRAVRELHVDEFRSLTSELSDV 65

Query: 101 GGFFDSGVFPTGNKWNTVGV-PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
                +   P G       +       +  +            +  SM+      GD+L+
Sbjct: 66  SLPLFASRVPAGAPVAADDLKEADVDLNTHLVRRPASSFLVTVKGDSMINAGIHDGDMLV 125

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           ++ +++   G  ++     G++  K L  +    + L+  N  +    V      +I  +
Sbjct: 126 VDKSLEARHGKVVVAVIN-GELTVKRL-EKTATGLRLLPENPDFAPIEVPEEASFFIWGV 183

Query: 219 L 219
           +
Sbjct: 184 V 184


>gi|117617886|ref|YP_854716.1| LexA repressor [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|134039204|sp|Q44069|LEXA_AERHH RecName: Full=LexA repressor
 gi|117559293|gb|ABK36241.1| LexA repressor [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 207

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 33/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ E I        + P  + +A+K G    S N ++             +
Sbjct: 1   MKPLTPRQAEVLELIKANMNETGMPPTRAEIAQKLGFK--SANAAEEH----------LK 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K                  +      +   + L    P    G    G    G    
Sbjct: 49  ALAK--------------KGVIEIMPGTSRGIRLLLEEEEPLEESGLPLIGKVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + Q  SM  +    GD+L ++   +V  G  ++ + 
Sbjct: 95  AQEHIESHYQVDPALFHPRADFLLRVQGMSMKNIGILDGDLLAVHKTQEVRNGQVVVARL 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L+  N       V++S
Sbjct: 155 D-EDVTVKRFQRK-GSQVWLLPENEELSPIEVDLS 187


>gi|229824888|ref|ZP_04450957.1| hypothetical protein GCWU000182_00237 [Abiotrophia defectiva ATCC
           49176]
 gi|229790891|gb|EEP27005.1| hypothetical protein GCWU000182_00237 [Abiotrophia defectiva ATCC
           49176]
          Length = 204

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 57/221 (25%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I + +          PS   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQQEILDYLKTQVLSKGYPPSVREICEAVRLKSTSSVHSHLETLEKNGYIKRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+                      +       L   P          +F   N      
Sbjct: 69  EIVDD--------------------EFNITRRELISVPVIGTVAAGEPIFAVENISEYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         Y    +      +  SM+ +    GD +I+      + GD ++      
Sbjct: 109 IPAE-------YMPADETFMLVVKGDSMINVGVYSGDKIIVKKCSTASNGDMVVAMVD-D 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K     +     L   N       V+   ++ I +++
Sbjct: 161 SATVKTFYKEK-GYFRLQPENDSMEPIIVDH--VDIIGKVI 198


>gi|86151756|ref|ZP_01069970.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124259|ref|YP_004066263.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841385|gb|EAQ58633.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315017981|gb|ADT66074.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 209

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 22/222 (9%)

Query: 1   MTSFSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     + I +  D +A     +L    +A++ G+ P +FN  K               I
Sbjct: 1   MQM--QEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYP------QI 52

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L   N +I           +   + +  I  LY   +  GG         G   +++
Sbjct: 53  LNFLNGRNISINYFFYGVSPKDQLECENKYRILKLYKTNASLGG---------GGINDSI 103

Query: 119 GVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              E+      + +    +         SM PL + G I +++           +     
Sbjct: 104 DCSELIVDEKLLNFFGGKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTR 162

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +  K ++ +    I L SLN  Y     +  D   I  I+
Sbjct: 163 DGLFIKQVLKQDDGVI-LHSLNPLYKDVFYKNGDFLLIGAIV 203


>gi|255004553|ref|ZP_05279354.1| hypothetical protein AmarV_04545 [Anaplasma marginale str.
           Virginia]
          Length = 198

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 66/208 (31%), Gaps = 18/208 (8%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            +R  +    LA +A +  +           G++  P+++ +  I       +  L+   
Sbjct: 1   MDRIGINARELADRASVGKSFVYDIL----SGKSSNPTSKKLMAIAEVLQVPLAYLVGSD 56

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
                 T      +  L            +             +P         +++++ 
Sbjct: 57  DGLYDVTSGGVLPVYYLAESEDEEDKNNHTRCS-------RFYMPAHT---KLPFSVESL 106

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR---SI 193
                 +  SM P     D+++++ + ++     +     +  I+ + L   R      +
Sbjct: 107 RFY-DVKGDSMSPTLVGQDVVLVDVSDKIAHPAGVFAIRDSMGILIRRLEYVRDSQNIML 165

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARILWA 221
            ++  N  Y      + DI+ + R++W 
Sbjct: 166 HVVCDNKKYSSYECPVEDIKVLGRVVWY 193


>gi|212219013|ref|YP_002305800.1| repressor protein C2 [Coxiella burnetii CbuK_Q154]
 gi|212013275|gb|ACJ20655.1| repressor protein C2 [Coxiella burnetii CbuK_Q154]
          Length = 238

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S S       +  +    ++  S LAR+ G+     ++       G+N  P   +I  
Sbjct: 23  MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 73

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118
           I       I QL+         + +           P  S           P     + V
Sbjct: 74  IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 133

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                 +  + +            Q  +M PL+  G  +I+    +    D ++++ +  
Sbjct: 134 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 187

Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            +   + +I+       L SLN       V +
Sbjct: 188 PEARLRQIITEGNDRY-LKSLNPELEKLEVAL 218


>gi|254498302|ref|ZP_05111042.1| phage repressor [Legionella drancourtii LLAP12]
 gi|254352464|gb|EET11259.1| phage repressor [Legionella drancourtii LLAP12]
          Length = 198

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 11/193 (5%)

Query: 31  AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90
             L  +  N  +        R P  E I ++  A       L+ L         KK   +
Sbjct: 6   TDLKQSRINNWENG-----LRTPGPEEIKQLANALEVPAAFLMCLSDEKQENQTKKLSRL 60

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
             L+                     +   +  + +       ++      K  D SM+P 
Sbjct: 61  IPLFNHHQACDAKHCLNELREQGSSDNAVLISVSAALLPT--LEGDAFALKMIDDSMMPE 118

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLISR--RGRSIDLMSLNCCYPVDTV 207
           +R  D L+++S+ Q   G+ ++++     +++              +L++LN  +P   V
Sbjct: 119 FRLNDTLVIDSSAQPKPGNYVVVRMDGKSEVIICQYKKLSYTSPEFELLTLNDNWPNIKV 178

Query: 208 EMS-DIEWIARIL 219
                ++ I  ++
Sbjct: 179 GDDIKLDIIGVVV 191


>gi|258539031|ref|YP_003173530.1| phage-related Cro/CI family transcription regulator [Lactobacillus
           rhamnosus Lc 705]
 gi|257150707|emb|CAR89679.1| Phage-related Cro/CI family transcription regulator [Lactobacillus
           rhamnosus Lc 705]
          Length = 221

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 26/225 (11%)

Query: 7   KKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+I+   + R+ +      + L+    +  ++ +           + P + S+  I    
Sbjct: 5   KEIFAKNLKRLMDSRGENLTELSNHIDVAYSTVSDWLHAN-----KMPRSGSLQTIADHY 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              I  L         +     K           +     +         + +   +I  
Sbjct: 60  GVNISDLTTNHSQKSVSGMGTYKY--------VPANISAGTLCNVDPFTSDEIESVQISD 111

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVA 182
              G YA             SM      G ++ +     +     GD ++          
Sbjct: 112 KVLGKYAGDKDLLMMHINGESMNQTIPDGSLIAVKQYNDIQDLKDGDIVVFADDGDYA-V 170

Query: 183 KVLISRRGRSID-LMSLNCC--YPVD-----TVEMSDIEWIARIL 219
           K   + R + I   +  +    +         +E  +I+ I R++
Sbjct: 171 KYFYNDRQKQIVTFIPDSTDKRFSPIMYTYEDLEEENIKIIGRVV 215


>gi|302340525|ref|YP_003805731.1| transcriptional repressor, LexA family [Spirochaeta smaragdinae DSM
           11293]
 gi|301637710|gb|ADK83137.1| transcriptional repressor, LexA family [Spirochaeta smaragdinae DSM
           11293]
          Length = 204

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 57/217 (26%), Gaps = 30/217 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + +    E H   P+   +A    +   +                   
Sbjct: 1   MKELTERQQEVLDFLGCFIEEHQYPPTMREIAAHFDISVRAAYDH--------------- 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K L   N     L      +    E   +  P L   P          +    N   
Sbjct: 46  --IKALEKKNAIRTDLNRSRAIEVLNREASPEVQPELIDVPLLGNVAAGQPLIAEENCEQ 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            + +P              +    + +  SML      GD  I+    Q   GD ++ + 
Sbjct: 104 VLKIPASALR-------PGRYFALRVKGDSMLNAGILDGDTAIIQQTEQARNGDIVVARV 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
               +  K         I L + N  YP    + + I
Sbjct: 157 NDEAVTLKRFYRETN-RIRLKAENPVYPPIFTQHARI 192


>gi|163855268|ref|YP_001629566.1| putative transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258996|emb|CAP41295.1| putative transcriptional regulator [Bordetella petrii]
          Length = 242

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 58/212 (27%), Gaps = 14/212 (6%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI----CQLLDLPFSDG 80
           + LA   G  P   ++      +  ++    +S+  +       +               
Sbjct: 28  AKLAAILGKAPNYVSRMLYESTKEGSKRIGDDSVALLNEKFPGWMAEDGWGSAGSNVLQF 87

Query: 81  RTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----TGNKWNTVGVPEIRSPHNGIYAIQTQ 136
               +                G             G   +     E    +   Y+ +  
Sbjct: 88  APDARAATSHHDDLTIHQFGTGGSMGQGLHLPDQPGVIQSWRVSAEWVEKNVRAYSAKQN 147

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS---I 193
                    SM P++  GD L+++  I+V   D +       +   K L      S   I
Sbjct: 148 LCIVTGFGDSMQPMFNPGDPLLVDVGIRVVDFDAVYFFRVGNEGFVKRLQRIPMESGLII 207

Query: 194 DLMSLNCCYPVDTV-EMSDIEWIARI--LWAS 222
              S N  Y    +  + D E + R+  +W S
Sbjct: 208 RAKSENKEYDSWDITSVMDFEVLGRVLKVWCS 239


>gi|164686056|ref|ZP_01946368.2| peptidase S24-like domain protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924149|ref|ZP_02219981.1| peptidase S24-like domain protein [Coxiella burnetii RSA 334]
 gi|164601612|gb|EAX33041.2| peptidase S24-like domain protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916408|gb|EDR35012.1| peptidase S24-like domain protein [Coxiella burnetii RSA 334]
          Length = 216

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S S       +  +    ++  S LAR+ G+     ++       G+N  P   +I  
Sbjct: 1   MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118
           I       I QL+         + +           P  S           P     + V
Sbjct: 52  IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 111

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                 +  + +            Q  +M PL+  G  +I+    +    D ++++ +  
Sbjct: 112 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 165

Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            +   + +I+       L SLN       V +
Sbjct: 166 PEARLRQIITEGNDRY-LKSLNPELEKLEVAL 196


>gi|326797423|ref|YP_004315243.1| phage repressor [Marinomonas mediterranea MMB-1]
 gi|326548187|gb|ADZ93407.1| putative phage repressor [Marinomonas mediterranea MMB-1]
          Length = 206

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 61/200 (30%), Gaps = 6/200 (3%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATNETICQLLDLPFSDGRTTE 84
           +A   G+ P+     +         +     E     +        +   +         
Sbjct: 1   MADFLGVKPSKVQDIETGKQRINEDFLILVSEKCSIDVGYLITGQHRSETMVSEPNAAQA 60

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
             +KE  L+Y P         +G +P  +      +P   +               +   
Sbjct: 61  PSKKEEDLVYIPQFDIELSAGTGAYPADHPLAIASLPFSSNWLLKKGLQAHNLKLLRVMG 120

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM PL +  D+++++++               GD++ K +  +   S+ L+S N  Y  
Sbjct: 121 DSMEPLLKDKDMVMIDTSRVKPTEAMPFAVRLDGDLLVKGIQRQGDGSLILVSRNKAYND 180

Query: 205 DTV----EMSDIEWIARILW 220
             +       D   I  ++W
Sbjct: 181 LIINSKQPPEDFAIIGAVVW 200


>gi|313892448|ref|ZP_07826038.1| peptidase S24-like protein [Dialister microaerophilus UPII 345-E]
 gi|313119130|gb|EFR42332.1| peptidase S24-like protein [Dialister microaerophilus UPII 345-E]
          Length = 218

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 73/227 (32%), Gaps = 24/227 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  +K+I + I +  + + LT   +A K GL   +  + +     G+    +  ++ K
Sbjct: 1   MYNNINKEIGQRIRKTRKANKLTLLEVAHKMGLSEGNVQRYE----IGKIENFALSTLTK 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                N T  +LL     +  T       +                      N    +  
Sbjct: 57  FAKVLNTTPEELLGWVDKEDVTNSFDYSYVDEPVSAGLPENI----------NAIKNLPK 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRT 177
             I     G YA +      +    SM  +   G ++ + + I+   +  GD ++     
Sbjct: 107 IPIADVFMGKYARKQDILIMRVNGESMNKVISNGALIAVKTNIELSNITNGDIVV-FTYN 165

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC--YPVDTVEMSD---IEWIARIL 219
           G+   K       + I L   +    +    +   D   +  I +++
Sbjct: 166 GEYAVKKYY-DMDKFIMLRPSSNDLRFTDLIINKEDTNELRIIGKVV 211


>gi|291532475|emb|CBL05588.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Megamonas hypermegale ART12/1]
          Length = 179

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 53/202 (26%), Gaps = 33/202 (16%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           +  + LAR   ++ +S ++      +     P  ++I KI    N +             
Sbjct: 1   MKQNELARLTKINKSSISEYLSGNYQ-----PKYKNILKIAEVLNVSPN----------- 44

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
              +       +   P          +    N    +   +              D   +
Sbjct: 45  IFLEDTSSEENIKRLPILGKIAAGIPILAQENIEGYLPYDDN-----------DADFCLR 93

Query: 142 TQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
               SM+      GDI+ +     V  G+   +         K +      ++ L S N 
Sbjct: 94  IHGDSMINARINDGDIVFIKQQSTVENGEIAAVLVN-DSATLKRVYFV-DDTVQLRSENP 151

Query: 201 CYPVDTVEM---SDIEWIARIL 219
            Y           +   + + +
Sbjct: 152 KYKPMIFSKNNCDNFRILGKAI 173


>gi|261855492|ref|YP_003262775.1| peptidase S24/S26A/S26B, conserved region [Halothiobacillus
           neapolitanus c2]
 gi|261835961|gb|ACX95728.1| Peptidase S24/S26A/S26B, conserved region [Halothiobacillus
           neapolitanus c2]
          Length = 243

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 6/146 (4%)

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
                  +     +   +         G+  +  FP+    + V   E    +  +   +
Sbjct: 95  WSDLLTASGLIPLQPATVAPVLTLPLFGYRIAAGFPSPA-DDYVE--ERIDLNRHLIRHK 151

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 + Q  SM+      GD+LI++ AI+   G  ++     G++  K L S  G  +
Sbjct: 152 EATFFLRVQGDSMINAGIHDGDMLIVDRAIEPVSGKIVIAALD-GELTVKRL-SASGGVV 209

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
            L+  N  YPV  +       +  ++
Sbjct: 210 RLLPENPDYPVIEIGAEQELVVWGVV 235


>gi|255608408|ref|XP_002538896.1| conserved hypothetical protein [Ricinus communis]
 gi|223509911|gb|EEF23487.1| conserved hypothetical protein [Ricinus communis]
          Length = 233

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 64/243 (26%), Gaps = 57/243 (23%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
             + N+    +  K G+  ++     +         P+  ++ K+          +    
Sbjct: 1   MAKKNIKQIDIHNKLGIPKSTITGYVKGRS-----LPTAGNVQKLADFFGVLKSDIDPRF 55

Query: 77  FSDGRTTEKK--------------------------------EKEIPLLYFPPSGSGGFF 104
            S+   T                                   E++  +     +     +
Sbjct: 56  DSNNIETNSNIIPSTLQKVTSTLSQLEHKRQLNVLDYAETQLEQQNTVEEPQATYYTYNY 115

Query: 105 DSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                  G           T+ +P               D        SM P Y  GD +
Sbjct: 116 YDHAASAGTGQYLNDVQVETIELPVDYDA----------DFVIPVYGDSMEPEYHSGDYV 165

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIA 216
            +  +I ++ GD  +     GD   K L+     +  L SLN  Y    ++   D   I 
Sbjct: 166 FIKLSINLSDGDIGV-FEYYGDAYIKQLVINDSGAF-LHSLNDKYDDILIDRDSDFRIIG 223

Query: 217 RIL 219
            ++
Sbjct: 224 EVI 226


>gi|238894195|ref|YP_002918929.1| putative repressor protein of prophage [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546511|dbj|BAH62862.1| putative repressor protein of prophage [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 241

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 74/221 (33%), Gaps = 27/221 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I    +   LT + L +  G++  +    +    +      + +++   L  + + + 
Sbjct: 28  DRIRARRKELKLTQAVLGKLVGVNRVTVTGWESG--DYAPGGSNLQALSAALKCSPKWLI 85

Query: 71  QLLDLPFSDGRTTEKKE----KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +  P ++  +    E    KEIP+L +  +G      S +    +  + +      S 
Sbjct: 86  DGIGEPDNEEPSFRPTEKFGVKEIPVLSWVQAGEWTESGSPMTRN-DISDWIFTTANLSD 144

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNS---AIQVNCGDRLLIKPR-T 177
                         + +  SM      P   +G I+I++    +     G  ++ +   +
Sbjct: 145 EG---------FALRVRGDSMTNPNGAPSIPEGSIVIVDPDFGSPYEVNGKIVVAQIDGS 195

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +   K  +        L+ LN  Y V  V  +    +  +
Sbjct: 196 TEATLKKFVIDGPMKY-LVPLNPNYRVLEVNGN-CRIVGVV 234


>gi|170721606|ref|YP_001749294.1| LexA repressor [Pseudomonas putida W619]
 gi|169759609|gb|ACA72925.1| transcriptional repressor, LexA family [Pseudomonas putida W619]
          Length = 205

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + + K+  I + I      H   PS   +A + G    S  +                
Sbjct: 4   MDNLTPKRRAILDFIRERITDHGQPPSLADIAIRFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K + A  +     +    + G       +   +L  P  G            G    
Sbjct: 48  ---KHITALCQAGYIDVTPNQARGIRLAAPLRRPEILEVPVLGQVAAGAPIGPDLGIHEQ 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            +  P +                 K +  SM       GD++ +    +   G  ++ + 
Sbjct: 105 LLIDPSLFRRTPD--------YLLKVRGDSMINDGIFDGDLVGIRQQGEARDGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  + G    L+  N  Y    V    
Sbjct: 157 D-GEVTIKRLQRQPGG-YRLLPRNPAYAPIDVGPER 190


>gi|159896684|ref|YP_001542931.1| LexA family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|229621224|sp|A9B5H8|LEXA_HERA2 RecName: Full=LexA repressor
 gi|159889723|gb|ABX02803.1| transcriptional repressor, LexA family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 214

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 70/225 (31%), Gaps = 24/225 (10%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M+  S   ++I++ I +    +   P+   + R+  +  TS        +E +       
Sbjct: 1   MSGLSQRQQRIYDYIKQFIRTNGYAPAIRDIQRELSISSTSVVAYNLRALESKGHIRREG 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +I + +                +             +      + G        + N  +
Sbjct: 61  NISRAIEL-------------INAEQPLPTVLGGQRVPVLGVIAAGQPIPVPNDSANSDD 107

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL-IK 174
           +V VPE    ++ +          + +  SM+      GDI++L        G+ +    
Sbjct: 108 SVLVPEEIVGNDKL----GDVYALRVKGYSMVDALIADGDIVLLRYQATAENGEMVAARI 163

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               ++  K +    G  + L   N          +++E   R++
Sbjct: 164 RDENEVTLKRIYW-EGDRVRLQPANVTMEAMYYPSTNVEVQGRVV 207


>gi|251772001|gb|EES52573.1| LexA repressor [Leptospirillum ferrodiazotrophum]
          Length = 209

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 44/223 (19%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLD-----PTSFNKSKRFGIEGRNRWPSTESI 58
            ++I + IDR        P+   +A + G+          ++    G+  R R   + ++
Sbjct: 11  QQEILDIIDRHIVERGYPPTLREIAAETGIRGISAIKGHIDRLVSKGLLVRKRGARSLAL 70

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +                                     S        G    G    + 
Sbjct: 71  PR---------------------------------SDASSSLVEVPILGQVAAGLPILSE 97

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                    +  +  +      K    SM       GD +++      + G  ++     
Sbjct: 98  ENLSGHLSVDPAWVRKGPVFFLKVHGESMKGAAILDGDYVLVRQQETADNGQIVVATID- 156

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           G+   K L  +RG  + L+  N  +P   V        I  ++
Sbjct: 157 GETTVKRL-RQRGDQLSLLPENPDFPEIPVRKEGSFRIIGLVV 198


>gi|50914249|ref|YP_060221.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394]
 gi|50903323|gb|AAT87038.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394]
          Length = 232

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 56/223 (25%), Gaps = 15/223 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +        +T S L     ++  + +  ++       +  +       + +     
Sbjct: 4   GHQLKTARLSKGITQSELGGLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L  P++    + K++                    +      +       + +    
Sbjct: 64  NYKLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            Y                 D        SM P Y  G+++++        G  +      
Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWD 182

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
           G    K +       + L+SLN  Y         +   I +I+
Sbjct: 183 GQTYIKKVFR-EDEGLRLVSLNKKYSDKFAPYSEEPRIIGKII 224


>gi|311693576|gb|ADP96449.1| phage repressor [marine bacterium HP15]
          Length = 327

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 13/192 (6%)

Query: 43  RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +  IEG  R   T+    +   TN+ + +                 +             
Sbjct: 134 KIEIEGFPRS-GTKRDVCVSPQTNKNLQRASKNADELEFFGHMDAWDSNTPLDEDEVELP 192

Query: 103 FFDSGVFPTGNKWNTV------GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
            F       G     V       +   +S  +    ++        +  SM P+   G  
Sbjct: 193 LFREVELAAGAGQTQVIENHGAKLRFAKSTLSRAGVVEENAACAFVRGNSMEPVMPDGTC 252

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDI--- 212
           + +N+         +      G +  K L  R G  I ++S N   +  +     D+   
Sbjct: 253 VGVNTGDTTIRDGEIYAIDHDGMLRVKYLHRRPGGGIKIVSQNASEHATEEYSAQDVIDN 312

Query: 213 --EWIARILWAS 222
               I R+ W S
Sbjct: 313 NIRIIGRVFWWS 324



 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/131 (6%), Positives = 32/131 (24%), Gaps = 6/131 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + + +  +    T   L  + GL   +    ++   +       +    ++  A   +
Sbjct: 3   LGQRLKQARKLAGYTQEQLGERVGLTQAAIGALEKRDSQ------RSNKAAEMAEALGVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+           +K ++              F   V  +    + +      +   
Sbjct: 57  LLWLVSGSGPMLEEEARKARKELDQSDARYQWETIFFDCVRESLEAGDNIENLLGITEDE 116

Query: 129 GIYAIQTQDTR 139
                      
Sbjct: 117 FEEITGGGLYA 127


>gi|261493642|ref|ZP_05990161.1| LexA repressor [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494310|ref|ZP_05990804.1| LexA repressor [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309959|gb|EEY11168.1| LexA repressor [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310642|gb|EEY11826.1| LexA repressor [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 211

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 64/218 (29%), Gaps = 32/218 (14%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I++ +    E   + P+   +AR+ G    +                + E   K LA
Sbjct: 9   QQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 52

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                               ++ +              G    G    G     V   E 
Sbjct: 53  RKGYIEMLSGTSRGIRILVEDENQA-------ANDEDEGLPLIGKVAAGTPILAVEHVEN 105

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG     + D   K    SM  +    GD+L ++       G  ++ +    ++  
Sbjct: 106 HYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVN-DEVTV 164

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       V  +    +IE IA
Sbjct: 165 KRLEKK-GELIYLHPENDELKPIVVNPAQEYIEIEGIA 201


>gi|92114192|ref|YP_574120.1| SOS-response transcriptional repressor, LexA [Chromohalobacter
           salexigens DSM 3043]
 gi|122990477|sp|Q1QVT7|LEXA_CHRSD RecName: Full=LexA repressor
 gi|91797282|gb|ABE59421.1| SOS-response transcriptional repressor, LexA [Chromohalobacter
           salexigens DSM 3043]
          Length = 212

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 63/214 (29%), Gaps = 32/214 (14%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + +++ I +        P  + +AR  G              E   R    + + +   
Sbjct: 9   QQHVFDFIVKTMNELGYPPTRAEIARALGFRSP-------NAAEEHLRALDRKGVIR--- 58

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                              T +  +         + + G    G    G+        + 
Sbjct: 59  ---------------MIPGTSRGIRLTGEEDAAATSTDGLPVVGEVAAGSPILAAAHIDR 103

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P    Y     D   + +  SM       GD+L ++   Q+  G  ++ +    ++  
Sbjct: 104 HCPLAPDYFTPRADYLLRVRGLSMKDAGILDGDLLAVHRTQQIRDGQIVVARLD-DEVTV 162

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEW 214
           K    + G  + L++ N  +    V++   D+E 
Sbjct: 163 KRFKRQ-GHHVWLVAENADFAPIEVDLRHQDLEI 195


>gi|78355940|ref|YP_387389.1| SOS-response transcriptional repressor, LexA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123768859|sp|Q314F2|LEXA_DESDG RecName: Full=LexA repressor
 gi|78218345|gb|ABB37694.1| SOS-response transcriptional repressor, LexA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 207

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
                           G    G+                      +     TQ  SM+  
Sbjct: 74  KHPQTNAVALVAVPIVGTVAAGHPIFAHENITGEVLVEASVVGSGKCFALYTQGDSMIDA 133

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-E 208
               GD++I+        GD ++      +   K L       I+L+  N       V  
Sbjct: 134 GINDGDLIIVRRQPIAEDGDIVIALLD-DEATVKRL-KIDNELIELVPENPRLKPIRVKP 191

Query: 209 MSDIEWIARIL 219
             ++  + +++
Sbjct: 192 EDELRILGKVV 202


>gi|313498272|gb|ADR59638.1| Putative phage repressor [Pseudomonas putida BIRD-1]
          Length = 289

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 7/204 (3%)

Query: 22  LTPSG---LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
           L+P      A + G +  S     R  +    +  S E+  ++LAA  E     L     
Sbjct: 83  LSPGEHMQAAVEPGDNKLSAADLVRQMLARSGKGISEETRQRLLAAAQEPADATLLEAEP 142

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
                   E  I       +  GG             +    P         ++      
Sbjct: 143 LRPGLVGDEVWIAHYDVRAAMGGGQIPHDY--PEMFKDVRVSPSHLRELGVTFSEHHHLK 200

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                  SM P  R  D LI++ +I+   GD +        I  K L        +++S 
Sbjct: 201 MVTGWGQSMEPTIRHRDPLIVDVSIREFVGDGIYFFSWGDHIYIKRLQIADEDHFEMISD 260

Query: 199 NCCYPVDTVEMSDIEWIARI--LW 220
           N  +    +   +    AR+  +W
Sbjct: 261 NSRHKDRMIRREETYIQARVLLVW 284


>gi|187776384|ref|ZP_02802325.2| putative repressor protein [Escherichia coli O157:H7 str. EC4196]
 gi|189403609|ref|ZP_02796576.2| putative repressor protein [Escherichia coli O157:H7 str. EC4486]
 gi|208809522|ref|ZP_03251859.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206]
 gi|208813471|ref|ZP_03254800.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045]
 gi|209395751|ref|YP_002271517.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115]
 gi|254794003|ref|YP_003078840.1| phage-related repressor protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|291281459|ref|YP_003498277.1| putative repressor protein [Escherichia coli O55:H7 str. CB9615]
 gi|187767417|gb|EDU31261.1| putative repressor protein [Escherichia coli O157:H7 str. EC4196]
 gi|189359678|gb|EDU78097.1| putative repressor protein [Escherichia coli O157:H7 str. EC4486]
 gi|208729323|gb|EDZ78924.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206]
 gi|208734748|gb|EDZ83435.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045]
 gi|209157151|gb|ACI34584.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115]
 gi|254593403|gb|ACT72764.1| phage-related repressor protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|290761332|gb|ADD55293.1| Putative repressor protein [Escherichia coli O55:H7 str. CB9615]
 gi|326339454|gb|EGD63265.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           O157:H7 str. 1125]
          Length = 204

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 23/203 (11%)

Query: 30  KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE 89
             G+   +  K +            T  I +I  A       L     +   +T +  + 
Sbjct: 1   MVGVSQAAIQKIETGKAN------QTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQP 54

Query: 90  IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RH 140
                                 G         E+       +                  
Sbjct: 55  TV---SHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRII 111

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
             +  SM      GD+L ++  ++   GD +           K L   +   + ++S N 
Sbjct: 112 NVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-KLLVISDNK 170

Query: 201 CYPVDT-VEMSD---IEWIARIL 219
            Y     +E  +   +    +++
Sbjct: 171 SYSPWDPIEKDEMNRVFIFGKVI 193


>gi|153813056|ref|ZP_01965724.1| hypothetical protein RUMOBE_03464 [Ruminococcus obeum ATCC 29174]
 gi|149830858|gb|EDM85948.1| hypothetical protein RUMOBE_03464 [Ruminococcus obeum ATCC 29174]
          Length = 236

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 76/240 (31%), Gaps = 28/240 (11%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLA-----RKAGLDPTSFNKSKRFGIEGR-------- 49
               K     I    +   L+   LA     R   +   S +K ++              
Sbjct: 1   MMIKKDFGSIIANKRKYRKLSQPQLAALLCERGLDVKAHSISKWEKNVNLPNVLQFFALC 60

Query: 50  --------NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY-FPPSGS 100
                   NR     +  K+ +  N+     +    +    + +  +E P++Y FP    
Sbjct: 61  EILEISDINRTFQIGTDEKLFSKLNDEGQAKVLDYMNLLMKSGEYIREEPIIYQFPRRTL 120

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
             +       TG   ++    EI           + D   +    SM PLY  G I+ ++
Sbjct: 121 SLYDLPVSAGTGQFLDSDRFSEIEVGDE---VSSSADFGVRVCGDSMEPLYLDGQIIWIH 177

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
               +  G+  +     GD   K    +    I L+SLN  Y    V   S ++   +++
Sbjct: 178 KQETLEEGEIGVFFLD-GDAYVKKYH-QSDSGIQLISLNKKYAPIQVTSGSTLKTFGKVV 235


>gi|145629903|ref|ZP_01785693.1| putative transcriptional regulator [Haemophilus influenzae 22.1-21]
 gi|144977712|gb|EDJ87665.1| putative transcriptional regulator [Haemophilus influenzae 22.1-21]
          Length = 191

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 97  PSGSGGFFDSGVFPTG-NKWNTVGVPEIRSP----HNGIYAIQTQDTRH-----KTQDTS 146
                  +       G   +     PEI S       G+  I  + +            S
Sbjct: 46  NYKHRIDYLDVRAAAGLTGFENSDYPEIVSSLFLSDEGLLQIIGRKSAVGIKIVNVPTDS 105

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           M P  RKGD + L++ I    GD +      G +  K +    G    L+S N  Y    
Sbjct: 106 MEPTIRKGDWVFLDTNIDYYNGDGVYAFAIDGALFIKRIQKLVGGGYRLLSDNKDYDPQD 165

Query: 207 VEMSDIEWIARIL 219
           +   +I   A+ +
Sbjct: 166 IT-DEICQTAKFV 177


>gi|87120241|ref|ZP_01076136.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein
           [Marinomonas sp. MED121]
 gi|86164344|gb|EAQ65614.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein
           [Marinomonas sp. MED121]
          Length = 102

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
           ++D     +  SM P    GD L+++     V     + +    G++  + +  +   ++
Sbjct: 7   SRDIAMYARGDSMEPTIYSGDSLVIDKTMSSVTSDGGIYVINYDGELFVQRVQKQFHGTV 66

Query: 194 DLMSLNCCYPVDTVEMSD---IEWIARILWA 221
           ++ S N  Y    +  SD   +  I R++W+
Sbjct: 67  EITSDNKNYGDIVIPSSDLNTLRIIGRVVWS 97


>gi|325277404|ref|ZP_08143023.1| Cro/CI family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097463|gb|EGB95690.1| Cro/CI family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 235

 Score = 78.3 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 15/202 (7%)

Query: 10  WEAIDR-MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           W A+ R   E   LT   LA + G+   S           + R P  ES+ +        
Sbjct: 20  WIALVRDRMEELGLTQEQLAERVGVSQGSVGHWVN-----KRRQPKIESMNRTFVEIGMP 74

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125
              +       G+  E++                +     +P  + W+ +    + E   
Sbjct: 75  HYHVSLQLRVQGQVGEERGTYEVDDDDDDLDLMQYIVCFRYPVLS-WDQLGGAQIAEPAE 133

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                Y  Q +      ++ +M  +      +G  ++++   Q   G  ++ +      +
Sbjct: 134 FEQTDYLAQGKAFWLTVENDAMSAISGRSVPQGMRMLVDPGAQAVPGRLVIARQPGKPAI 193

Query: 182 AKVLISRRGRSIDLMSLNCCYP 203
            + L    G+   L +LN  YP
Sbjct: 194 FRELAEEGGQRY-LKALNSNYP 214


>gi|227488726|ref|ZP_03919042.1| repressor LexA [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542277|ref|ZP_03972326.1| repressor lexA [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091148|gb|EEI26460.1| repressor LexA [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181938|gb|EEI62910.1| repressor lexA [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 236

 Score = 78.3 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 21/219 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            K+I E I          PS   +    GL  TS    +   +E +    R P+      
Sbjct: 26  QKRIMEVIRDSVALRGYPPSIREIGDATGLQSTSSVAYQLKELEKKGFLKRDPNKPRAVD 85

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +     ET  +   +   +    ++       +    + S G               + +
Sbjct: 86  V-RHLRETAPEKSKVSIDEDGVLKEGFVAPAYIPVVGTISAGLPV---LAEETIEEYMPL 141

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P              +    +    SM       GD +I         GD +      G+
Sbjct: 142 PSELVG-------DGELFMLEVNGRSMKDAGIMDGDWVICKRQSIAEKGDFVAALID-GE 193

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K         + L+  N  +       +D E +  +
Sbjct: 194 ATVKEFHKDSTG-VWLLPYNESFDPI--PGNDAEILGIV 229


>gi|124515759|gb|EAY57268.1| LexA repressor [Leptospirillum rubarum]
 gi|206602264|gb|EDZ38746.1| LexA repressor [Leptospirillum sp. Group II '5-way CG']
          Length = 205

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 59/207 (28%), Gaps = 16/207 (7%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETICQLLDL 75
            +  +L+P            + +  + +  + G    P+   I   +        +    
Sbjct: 3   RQEKSLSPRQ--------QEALHFIRSYTAQTGYP--PTLREIAAHMEIRGLHAVRKHLE 52

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
                    +++    L     S +       G    G+   +          +  +  +
Sbjct: 53  ALMAKGYLSREKGARTLFAGSLSPNAVPVPVLGRVAAGSLRESPEDHTKTWFVDPDWLPE 112

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 + +  SM       GD ++++S      GD ++     G+   K L  + G  +
Sbjct: 113 GPSFFLRVRGDSMKDAAILDGDYVLVSSRPDAKPGDIVVAMID-GESTVKRLSRK-GDRL 170

Query: 194 DLMSLNCCYPVDTVEMS-DIEWIARIL 219
            L   N  YP   +    D      ++
Sbjct: 171 VLSPENSAYPDIPIPTDTDFRITGVVV 197


>gi|194365253|ref|YP_002027863.1| LexA repressor [Stenotrophomonas maltophilia R551-3]
 gi|229470190|sp|B4SRA9|LEXA_STRM5 RecName: Full=LexA repressor
 gi|194348057|gb|ACF51180.1| transcriptional repressor, LexA family [Stenotrophomonas
           maltophilia R551-3]
          Length = 211

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 57/212 (26%), Gaps = 27/212 (12%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLD--PTSFNKSKRFGIEGRNRWPSTESIFK 60
           + + I + I    E      + + +AR  G      +    +     G  R    ++   
Sbjct: 6   TQQAILQLIAERIESEGAPPSQTEIARAFGFKGVRAAQYHLEALEQAGAIRRIPGQA--- 62

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                                   +K  E  L             +   P G    +   
Sbjct: 63  -------------RGIRLVQAPPLEKLAEPGLPDNVLRLPVLGRVAAGLPIGADIGSDDF 109

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                  + ++     D   K Q  SM+      GD++ ++     + G  ++ +    +
Sbjct: 110 ----VVLDRVFFSPAPDYLLKVQGDSMIDEGIFDGDLIGVHRTRDAHSGQIVVARID-DE 164

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           I  K L+      I L+  N  Y    V    
Sbjct: 165 ITVK-LLKIAKDRIRLLPRNPDYKPIEVLPDQ 195


>gi|256021955|ref|ZP_05435820.1| phage repressor protein [Escherichia sp. 4_1_40B]
 gi|293410745|ref|ZP_06654321.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298381541|ref|ZP_06991140.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|291471213|gb|EFF13697.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298278983|gb|EFI20497.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|323936508|gb|EGB32796.1| peptidase S24 [Escherichia coli E1520]
          Length = 238

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 23/231 (9%)

Query: 2   TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
            S + +++   + +  +     +   +T   +A + G+   +                + 
Sbjct: 5   KSLTTEQLEDAKRLKALYESKKKELGITQYSIADELGITQGAVGHYLNGRN-----ALNV 59

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E           +I        +      +  K    + +      G     +       
Sbjct: 60  EVASGFARLLQVSIADFSQSIAAKVAEQAESLKSDANVRYAGEYRAGKRYPVLSSIQAGS 119

Query: 116 -----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVN 166
                    + +I         IQ      K +  SM         +G  ++ ++  +  
Sbjct: 120 WCEACEPYTIKDIDVWLESDAHIQGNAFWLKVEGDSMTAPVGLSIPEGTFVLFDTGREAI 179

Query: 167 CGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            G  ++     + +   K LI   G    L  LN  +P+  +  +  + I 
Sbjct: 180 NGSLVIAKLSDSNEATFKKLIIDGGNKY-LKGLNPAWPLVPINGN-CKIIG 228


>gi|323699201|ref|ZP_08111113.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio sp. ND132]
 gi|323459133|gb|EGB14998.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
           desulfuricans ND132]
          Length = 240

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 65/219 (29%), Gaps = 7/219 (3%)

Query: 11  EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           EA++R+ +     T   LA    +  +S + +KR      + +        +        
Sbjct: 18  EALERIKKATGARTQVQLAEVLDVRQSSISDAKRRCSIPADWFLKLYRSHGLDPDWLSEG 77

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN- 128
            + + +     +             +    S G         G   +             
Sbjct: 78  VEPVYINADKAKVPADTLLRETPAPYGRMNSRGRLVPVSTMAGADKDAADWEPKSIEELS 137

Query: 129 -GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLI 186
                 + +    K    SM P+  +G  + ++    +   GD   +      +  + + 
Sbjct: 138 VPESFCRPRLLVVKVDSASMDPVITRGAFVGIDRDQSEHPDGDLCAVHFPHQGLTIRRVF 197

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEW--IARILWASQ 223
            + G +  L + N  Y   T+   ++    + R++W  Q
Sbjct: 198 HQ-GDTFLLKADNDQYSDLTIPAEEMNARTVGRVIWVLQ 235


>gi|209544672|ref|YP_002276901.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532349|gb|ACI52286.1| putative phage repressor [Gluconacetobacter diazotrophicus PAl 5]
          Length = 289

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 63/224 (28%), Gaps = 18/224 (8%)

Query: 14  DRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           D +A R  ++P+            LDP +   +     E   R         +  A    
Sbjct: 66  DALARRFAVSPNVFRDDMDPNWEPLDPATLPPAPEDAAEAPPRPRFAAPRAPLGPAPQVP 125

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                  P                   P          G  P+         P       
Sbjct: 126 PLGAGRPPPLT--ARRDGPMMEGQFRIPEYNVAPQAGPGALPSNMAVEDGPQPVDHWFLP 183

Query: 129 GIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
             +              +    SM P Y+ G+ +++++A +      + +      +V K
Sbjct: 184 RRFLGAFTDSPEALVVLRVAGDSMEPDYQAGERVLVDTAHRTPSPPGVYVLWDGFGLVLK 243

Query: 184 VLISRRGR----SIDLMSLNCCYPVDTVEMSDIEWIARIL--WA 221
            L    G     S+ +MS+N  YP  T  + ++    R++  W 
Sbjct: 244 RLEIVYGSEDPVSVQIMSINPGYPTYTRALDEVHINGRVVGKWV 287


>gi|167628667|ref|YP_001679166.1| lexa repressor [Heliobacterium modesticaldum Ice1]
 gi|167591407|gb|ABZ83155.1| lexa repressor [Heliobacterium modesticaldum Ice1]
          Length = 260

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 67/259 (25%), Gaps = 42/259 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKS-KRFGIEGRNR-WP 53
           M   + K+  ++E I +        PS   +  + G    ++ +   KR   +G  R  P
Sbjct: 1   MMQLTPKEREVFEVIRKNVREKGYPPSVREIGLQMGWASSSTVHVYLKRLEEKGWIRKDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG------ 107
           +     ++LA   E      + P          E+  P+                     
Sbjct: 61  TKPRAIEVLADRQERREWGSNNPPDAMAAVGVSEEGSPVWTTSHLAGPSAGQMAEEQLPG 120

Query: 108 ------------------------VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
                                       G+        E   P       + +    + +
Sbjct: 121 DGDNAAEGRSQSAAGPFLQVPLLGNVAAGSPILAAEYVEDYLPIAKSMLGEGEFFGLRVK 180

Query: 144 DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM+      GD +I+      + G  ++      D   K         + L   N   
Sbjct: 181 GDSMIDAGILHGDTVIVRRQAHASNGQIVVALID-DDATVKRFFK-EADHVRLQPENSAL 238

Query: 203 PVDTVEMSDIEWIARILWA 221
               V   D+  + +++  
Sbjct: 239 EPIRVR--DLSILGKVVMV 255


>gi|121611811|ref|YP_999618.1| LexA repressor [Verminephrobacter eiseniae EF01-2]
 gi|171769494|sp|A1WSJ3|LEXA_VEREI RecName: Full=LexA repressor
 gi|121556451|gb|ABM60600.1| SOS-response transcriptional repressor, LexA [Verminephrobacter
           eiseniae EF01-2]
          Length = 224

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 60/213 (28%), Gaps = 14/213 (6%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              +   +++ + I     R    P+     A L   S N ++                 
Sbjct: 5   PKLTARQQQVLDLIQNTMARTGAPPTRAEIAAELGFKSANAAEEHLQA---------LAR 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K          + + L     R+             P S        G    G+      
Sbjct: 56  KGAIELVSGTSRGIRLHSETLRSIHAARSGPSGAGNPGSSPWVLPLIGRVAAGSPILAQE 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             E              D   K +  SM       GD+L + +  +   G  ++ +    
Sbjct: 116 HVEQTYSVENGLFQHKPDYLLKVRGMSMRDAGIIDGDLLAVQATREARNGQIIVAR-LGD 174

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           D+  K L  R   +I+L+  N  YPV  V+  +
Sbjct: 175 DVTVKRL-RRTASTIELLPENPDYPVIVVQPGE 206


>gi|157737925|ref|YP_001490609.1| phage repressor protein, putative [Arcobacter butzleri RM4018]
 gi|157699779|gb|ABV67939.1| phage repressor protein, putative [Arcobacter butzleri RM4018]
          Length = 225

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 63/225 (28%), Gaps = 24/225 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + +  +   LT S  A +  L        +    +    +   E I +  + +   +
Sbjct: 4   GKRLKKARDYVGLTQSEFAEQFSLKWDKIKNIETETHKLNPDF--AEMIEQKYSISGWWL 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPE 122
                    +  +  + E    L+         +F       G                +
Sbjct: 62  LTGKGDMLLNKDSKLQNETNSNLVNIS------YFKDTYAAAGAGAINFDKAPMVMAFDK 115

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTG 178
                     +            SM P  + G++L +N       ++   D  +      
Sbjct: 116 DFLKVQLGITVFKHLHIIHAIGNSMYPTIQTGEMLFVNPFENEEFKIRDKDIYV-INTPN 174

Query: 179 DIVAKVLISRRGRSID-LMSLNCCYPVDTVEMSDIE---WIARIL 219
            ++ K +     + I  L+S N      T+E  D +    I R++
Sbjct: 175 GVLVKRIKIHPIKPIYILVSDNPQDEDITLEGDDFKACTIIGRVI 219


>gi|297568146|ref|YP_003689490.1| Peptidase S24/S26A/S26B, conserved region [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924061|gb|ADH84871.1| Peptidase S24/S26A/S26B, conserved region [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 145

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        +  + A        +    SM+       DIL+++ +++   G  ++
Sbjct: 36  ADDYIE--GRLDLNQLMIANPAATFFVRVAGDSMIGAGIHHHDILVVDRSLEPTDGKVVI 93

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  +   +I L + N  YP   +       +  ++
Sbjct: 94  AVVD-GELTVKRLRRQ-NGTIRLQAENPDYPAIKLNEETSCEVWGVV 138


>gi|116512114|ref|YP_809330.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11]
 gi|125624033|ref|YP_001032516.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|37936252|emb|CAD89881.1| HdiR protein [Lactococcus lactis subsp. cremoris]
 gi|116107768|gb|ABJ72908.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11]
 gi|124492841|emb|CAL97796.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070804|gb|ADJ60204.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 252

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 72/245 (29%), Gaps = 44/245 (17%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + ++ +   LT S LA K G+   ++   ++         P+ E + K+    +  I
Sbjct: 4   GQNLKKLRKEAKLTQSQLADKLGMKQNAYVLWEQKATN-----PTLELLEKLADIYDLPI 58

Query: 70  CQLLDLPFS-------DGRTTEKKEKEIPLLYFPP-------------------SGSGGF 103
            +L+  P +       D   +   E++  ++ F                     S     
Sbjct: 59  QELIKNPDNGAEKQLIDNYRSLTGEQQESVINFTDFLIEQNKADLIDLKTYRRSSLQYAV 118

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILN 160
            +      G              H   Y    +   D   + +  SM P +    I    
Sbjct: 119 VEDEALSAGFGQTA----NNTGGHYRAYTTENLGRYDGAARVKGESMEPDFPNFSIATFL 174

Query: 161 SAIQVNCGDRL-LIKPRTGD--IVAKVLISRRGRSIDLMSLNCC--YPVDTVEMSD-IEW 214
                  GD   + +   G+  +  K +      +  + SLN    Y    +   D    
Sbjct: 175 HTGFGRSGDVYAIAEGDLGEERLYIKQVFEEEDGNFRIHSLNPDPQYKDFYLGQEDNFRI 234

Query: 215 IARIL 219
           I  ++
Sbjct: 235 IGPVV 239


>gi|258515363|ref|YP_003191585.1| SOS-response transcriptional repressor, LexA [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779068|gb|ACV62962.1| SOS-response transcriptional repressor, LexA [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 206

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 59/224 (26%), Gaps = 36/224 (16%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGR--NRWPSTE 56
           T+   + I + I +        PS   +    GL  + + +   R         R P+  
Sbjct: 6   TTQREEAILDVIKQTIRHKGYPPSVREIGVAVGLSSSSTVHGYLRKLEMKGLLRRDPTKP 65

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              ++L  T +       L                                    G+   
Sbjct: 66  RAIEVLDRTEKESIDFNILNIPIIGK--------------------------VSAGSPVL 99

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            +   E        Y         + +  SM      +GD++++        GD ++   
Sbjct: 100 AIENQEGNLQLPLDYTGAGNFFLLRVKGKSMIEAGIFEGDLVLVRQQPAAENGDIIVALL 159

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  K     +   I L   N       V+  +++ + +++
Sbjct: 160 EEN-ATVKRFFKEK-EYIRLQPENKLLSPILVK--EVQILGKVV 199


>gi|118580319|ref|YP_901569.1| SOS-response transcriptional repressor LexA [Pelobacter propionicus
           DSM 2379]
 gi|118503029|gb|ABK99511.1| SOS-response transcriptional repressor, LexA [Pelobacter
           propionicus DSM 2379]
          Length = 200

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 61/226 (26%), Gaps = 40/226 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPS 54
           M + S   K++ E I     ++   PS   +    G+   +   +  +    +G  R  +
Sbjct: 1   MEALSPRQKQVLEFIRGYVAQNEYPPSLRDIGNYIGVSGNTAVLSHLEALERKGHIRRDT 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             S                              + I L+             G    G  
Sbjct: 61  GSS------------------------------RRIVLIRDKQHEVLQIPIVGTVQAGIP 90

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
              V   E   P      ++      + +  SM       GD+ ++        GD ++ 
Sbjct: 91  TLAVESIEGYYPMEK-MQLRGGTFFLRVKGDSMINDAIMDGDLALIRPQETAENGDIVVA 149

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +   K      G  I L   N  + V  +   D+  I + +
Sbjct: 150 LI-EDEATLKRFYR-EGDFIRLEPSNTNFAVIVISAKDVTIIGKAI 193


>gi|294138964|ref|YP_003554942.1| LexA repressor [Shewanella violacea DSS12]
 gi|293325433|dbj|BAJ00164.1| LexA repressor [Shewanella violacea DSS12]
          Length = 205

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 59/214 (27%), Gaps = 35/214 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A++ G                     + E
Sbjct: 1   MRPLTPRQAEILELIKRNIIDTGMPPTRAEIAKRLGFKSA---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                          + I L         G    G    G    
Sbjct: 46  HLKALAKK-------------GCIEIIPGTSRGIRLTQAAEPEDLGLPLIGQVAAGEPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   + +  SM  +   +GD+L ++   Q   G  ++ + 
Sbjct: 93  AQEHIEQHYKVDPAMFRPSADFLLRVRGDSMKNIGILEGDLLAVHKISQAKNGQIVVAR- 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K    + G  + L + N  Y    V++
Sbjct: 152 VEEDVTVKRFEKK-GSMVYLHAENEDYAPIVVDL 184


>gi|260557490|ref|ZP_05829705.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
 gi|260409116|gb|EEX02419.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
          Length = 225

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 19/228 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M    +K   + ++ + +  +    T + L    G+      +        + R    ++
Sbjct: 1   MEDAKYKDFADRLNALMKAKDSPIKTINELKNAIGVSYEMARRYTLGSA--KPRIEKLQT 58

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  I      +         ++   ++K   E   +      + G F        +    
Sbjct: 59  LADIFGV-EISYLDHGTKLDNNIDLSDKVGFEGRRVPVISWVAAGSFTPIETVLKDTEIE 117

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIK 174
             +P  R                K    SM P +  GD + +N  IQ       D +++ 
Sbjct: 118 EYLPPNRR-------CGKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVA 170

Query: 175 PRTG-DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219
                +   K LI     +   L  LN  +P   +++  D   + +++
Sbjct: 171 CAGDSEATFKKLIIEGEGTSKFLEPLNPDWPDKIIKLSEDCRLVGKVV 218


>gi|94987278|ref|YP_595211.1| transcriptional regulator [Lawsonia intracellularis PHE/MN1-00]
 gi|94731527|emb|CAJ54890.1| predicted transcriptional regulator [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 246

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE------SIFK 60
           +KI E +  +  +   +    +   G+   +    +         + S        S+ +
Sbjct: 4   QKIGEKLKALRGQE--SRDSFSAHFGIHRNTLAAWESGERLPSLEFLSLLAQQKKLSVAE 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------- 109
           IL        + L  P    +  +        L    + S   +    F           
Sbjct: 62  ILGEAGVVSTKGLSSPQKVQQEADTTVNSEYKLERERACSQFSWKGNDFTLIPLVKAVLS 121

Query: 110 PTGNKWNTVGVPEIRSPHNGIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
             G  + T    E        +             +    SM P    GDI +++     
Sbjct: 122 AGGGSFETTDKIEGHYAFRNDFLYYRGNPKTMKLFRVDGDSMEPRVSDGDIALIDQGQVA 181

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILW 220
               ++        I  KVL ++    + L S N  Y     +           I R +W
Sbjct: 182 PRAGKIYAVRLEDVIYLKVLNTQP-GKLILSSYNTDYTPIEFDTRGDMADCFSIIGRAVW 240

Query: 221 A 221
            
Sbjct: 241 I 241


>gi|298368482|ref|ZP_06979800.1| hypothetical protein HMPREF9016_00147 [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282485|gb|EFI23972.1| hypothetical protein HMPREF9016_00147 [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 234

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 64/220 (29%), Gaps = 29/220 (13%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
           P+    K  +  + F++  + G       P+ + + KI   T   +  LL    S     
Sbjct: 17  PADFYNKIDMSASGFSRVWKDGAI-----PTADYLIKIQEVTGCDLNWLLTGQGSPYMNK 71

Query: 84  EKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            +  +                                  G+ +       +       Y 
Sbjct: 72  GQAVEVRTHTDGTATDTLGNPINLDEFVFIPRYDVYAAAGHGYPAEDDKPLFCMAFRRYW 131

Query: 133 IQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           I+        + +    +  SM  +   GD +++N A      D L +      +  K +
Sbjct: 132 IENYVTRQLDKLSVIAVKGDSMEGVLNHGDNILVNHAETT-PRDGLYVIRIDNQLFVKQI 190

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARILWA 221
                  + + S N  Y    ++++D    +  I R+ W 
Sbjct: 191 QKLP-GKLLVKSANPVYEPFEIDLTDDNQNVAIIGRVEWY 229


>gi|171910721|ref|ZP_02926191.1| hypothetical protein VspiD_06095 [Verrucomicrobium spinosum DSM
           4136]
          Length = 407

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 65/240 (27%), Gaps = 36/240 (15%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK------------- 60
             +     ++   LA+  G+      K +      +      E + +             
Sbjct: 161 QALRALLGISRPQLAQWLGVTRQYITKIEGGMPPSKPVMLLVERLEEEARQNADLNGKPR 220

Query: 61  --------------ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
                          L   +      L            +           +        
Sbjct: 221 DVEPVSRGFAIAGAALETLSRAQIASLQNSGGAHAAQPTRLTPRASGVQVEAPVFSARSV 280

Query: 107 GVFPTGNKWNTVGVPEIRSPHNG----IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
            +       + +  P + + H            Q    +    +M P Y +G I I+   
Sbjct: 281 PLLAMHEAAD-LPTPAVAAHHGRQHLAFVVEDEQAFAVRINGEAMAPHYPEGCIAIICPG 339

Query: 163 IQVNCGDRLLIKPR--TGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +    GD +L + R   G      L+   + G S+ L S +  YP  TV+  D+ W+A +
Sbjct: 340 LPSRNGDLVLARLRDERGGGTILRLVHFIQDGESLVLTSTHAAYPPLTVQKEDLLWLAPV 399


>gi|149022031|ref|ZP_01835993.1| phage transcriptional repressor [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929875|gb|EDK80864.1| phage transcriptional repressor [Streptococcus pneumoniae
           SP23-BS72]
          Length = 263

 Score = 78.3 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 68/261 (26%), Gaps = 59/261 (22%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I E I    ++  +T   LA++ G+  ++     +         PS   I K+     
Sbjct: 8   QIIAENITHFRKQRGITQKELAKEVGITASTMTDYMKLRS-----APSFGVIQKLADYFG 62

Query: 67  ETICQLLDLPFSDGRTTEK------------------KEKEIPLLYFPPSGSGGFFDSGV 108
                +      +   +                       +  +L           +   
Sbjct: 63  VKKSDIDTTFKEESTNSLPDAPDSLTQQIMDKVVQLTPPNQKIVLRTSEELLESQNEEET 122

Query: 109 -------------------------FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
                                    F  G  ++      I             D   K  
Sbjct: 123 KINEVSEVISLYQVEVVSETAAASGFNYGFGYDDTDRETIEVDERP----PRHDIATKVS 178

Query: 144 DTSMLPLYRKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM P Y+ GDIL +++  +    GD  +I         K +       + L+SLN  Y
Sbjct: 179 GDSMQPDYQDGDILYLVDKGLTTYNGDLAIIAY-GDRSYFKKIY-TENGRLRLVSLNDKY 236

Query: 203 PVDTVE---MSDIEW-IARIL 219
               ++     D    I  ++
Sbjct: 237 EDIILDFPPAEDTHIKIYAVV 257


>gi|300214145|gb|ADJ78561.1| CI-like repressor, phage associated [Lactobacillus salivarius CECT
           5713]
          Length = 258

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 67/247 (27%), Gaps = 42/247 (17%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   ++ + +        + R+ G+  ++     +       R PS  ++ K+    N  
Sbjct: 17  ISATLNELLQLSGKKQIDITRQTGIPASTLTGYFKGT-----RLPSPVNVQKLADFFNVL 71

Query: 69  ICQLLDLP-------------------------------FSDGRTTEKKEKEIPLLYFPP 97
              +                                          + ++++   ++   
Sbjct: 72  KSDVDPRFKKISESDTDGLRXXLLSKYEKLNTENKKKVVDYADNRLKDQKRQQNKIHPIN 131

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                ++   +             E              D   +    SM P +  G I+
Sbjct: 132 ENDNTYYVDVLGSVSAGAGEWLTDEQHEEVMVNNEPPAHDFALRVNGDSMTPTFSDGQII 191

Query: 158 ILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEM-SDI 212
            +N      +V     ++     GD   K ++    R    L+SLN  Y    ++   D 
Sbjct: 192 YVNKIYDTXEVRNNQFVI-AELNGDSYVKKIVFDDNRKNCRLISLNKKYADIEIKKSDDF 250

Query: 213 EWIARIL 219
           + +  ++
Sbjct: 251 KIVGVVI 257


>gi|215919180|ref|NP_820400.2| S24 family peptidase [Coxiella burnetii RSA 493]
 gi|206584064|gb|AAO90914.2| repressor protein C2 [Coxiella burnetii RSA 493]
          Length = 238

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 19/210 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S S       +  +    ++  S LAR+ G+     ++       G+N  P   +I  
Sbjct: 23  MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 73

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118
           I       I QL+         + +           P  S           P     + V
Sbjct: 74  IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 133

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                 +  + +            Q  +M PL+  G  +I+    +    D ++++ +  
Sbjct: 134 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 187

Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
            +   + +I+       L SLN       V
Sbjct: 188 PEARLRQIITEGNDRY-LKSLNPELEKLEV 216


>gi|312878315|ref|ZP_07738232.1| Peptidase S24/S26A/S26B, conserved region [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794915|gb|EFR11327.1| Peptidase S24/S26A/S26B, conserved region [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 190

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 130 IYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           I +   +    K +  SM     +  DI I+         D ++     G+I  K     
Sbjct: 95  IISDPERYFAIKVKGDSMVEANIKDRDIAIVQKCNTAENRDIVIAWLD-GEITVKRFCKM 153

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G ++ L+  N  Y    ++  ++  + +++
Sbjct: 154 -GSTVLLIPENSKYEPINIKEGELRIVGKVV 183


>gi|187478005|ref|YP_786029.1| LexA repressor [Bordetella avium 197N]
 gi|123738735|sp|Q2L247|LEXA_BORA1 RecName: Full=LexA repressor
 gi|115422591|emb|CAJ49116.1| LexA repressor [Bordetella avium 197N]
          Length = 213

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 60/216 (27%), Gaps = 29/216 (13%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-E 56
           T  +   ++I + I +   R    P  + +A+  G                  R P+  E
Sbjct: 3   TKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGF-----------------RSPNAAE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                 +  E                      G    G+   
Sbjct: 46  DHLKALARKGAIELTAGASRGIRLKDAEPTPS----PILASLSQLLLPLVGRVAAGSPIL 101

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +     Q  D   K +  SM      +GD+L +  + +   G  ++ + 
Sbjct: 102 AAEHVEREVGVDPSLFSQAPDYLLKVRGMSMRDAGILEGDLLAVKKSSEARNGQIIVAR- 160

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K L    G  I+L+  N  +    V   D
Sbjct: 161 LGDDVTVKRLQRH-GSRIELLPENPEFSPILVAPDD 195


>gi|317405210|gb|EFV85549.1| LexA repressor [Achromobacter xylosoxidans C54]
          Length = 216

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 62/210 (29%), Gaps = 24/210 (11%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62
            ++I + I +   R    P  + +A+  G                  R P+  E   K L
Sbjct: 9   QQQILDLIRQTVARPGFPPTRAEIAQALGF-----------------RSPNAAEDHLKAL 51

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                 +       + PL   P          G    G+        E
Sbjct: 52  ARKGAIELTAGASRGIRLKDNSSTPSQAPLP-LPGLAQLLLPLVGRVAAGSPILATEHVE 110

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +     Q  D   K +  SM      +GD+L +  A +   G  ++ +    D+ 
Sbjct: 111 REIGVDSSLFAQAPDYLLKVRGMSMRDAGILEGDLLAVKKASEARNGQIVVAR-LGDDVT 169

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L  +    I+L+  N  + V  VE   
Sbjct: 170 VKRLQRQ-NGRIELLPENPDFNVIVVEADQ 198


>gi|226354933|ref|YP_002784673.1| LexA repressor [Deinococcus deserti VCD115]
 gi|226316923|gb|ACO44919.1| putative LexA repressor [Deinococcus deserti VCD115]
          Length = 240

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 61/217 (28%), Gaps = 18/217 (8%)

Query: 13  IDRMAERHNLTPSGLARKAG--------LDPTSFNKSKRFGIEGRNRWPSTES-IFKILA 63
           +        L  + ++ +          +     ++ +R      +  P+ +  + + L 
Sbjct: 21  LRERRAALGLQQADISARTASLSGETGRVTQPYLSRLERGTRLLSSLTPARQDALRRALE 80

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-E 122
            T         LP       E     + L+  P                +  +   VP  
Sbjct: 81  LTASEWIARTGLPLLTPVPGEDVLGTLELVRVPVRALATAGLPLTEDFESIIDHELVPLR 140

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIV 181
              P   +  +Q                 R GD + +++    +  G   ++      + 
Sbjct: 141 DHRPGMLVLEVQGDSMT----TDGGAGGIRSGDRIYVDAGDLDLREGRVYVLHVPGLGLT 196

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            K L    GR + L S N  +P   V   +   + R+
Sbjct: 197 VKRLRRY-GRELWLTSDNPDHPP--VRPEEATTVGRV 230


>gi|237737314|ref|ZP_04567795.1| LexA repressor [Fusobacterium mortiferum ATCC 9817]
 gi|229421176|gb|EEO36223.1| LexA repressor [Fusobacterium mortiferum ATCC 9817]
          Length = 230

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 60/223 (26%), Gaps = 19/223 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +    +++       A++ G      +           R PS + I       N + 
Sbjct: 6   GKYLSDYLDKNKYKIENFAKEVGYSTGLISHYTTG-----KRSPSYKFIEAFFKKFNFSN 60

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF---------PTGNKWNTVGV 120
            +  ++     R       +        + S        F           GN +     
Sbjct: 61  EEKEEVLKILARDKMPDSLKKLKTQINNTQSNAIIIEEEFINVPVKAKASAGNGYIN-CC 119

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            ++                 +    SM PL + G  ++++         ++ I     + 
Sbjct: 120 EDLYMKTIRKNGFHEHCYLIEVCGNSMEPLIQDGAFVVVDPYQTDYIEGKIYIVKLDEET 179

Query: 181 VAKVLISRRG-RSIDLMSLNCCYPVDTVE---MSDIEWIARIL 219
             K +      + I L S+N  Y    V      + + + R +
Sbjct: 180 FIKRIYFNTDLKIIILKSINPKYDDIYVSKNKAENFKIMGRAV 222


>gi|229551634|ref|ZP_04440359.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus rhamnosus LMS2-1]
 gi|229314952|gb|EEN80925.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus rhamnosus LMS2-1]
          Length = 260

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/258 (11%), Positives = 56/258 (21%), Gaps = 56/258 (21%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +  +        A       ++ ++ +          P    +  I       + 
Sbjct: 4   KNLKYLRAKRGYDQQTFAEMIHRSVSTVSEWESGKYT-----PKAGILADIANMFGVKLD 58

Query: 71  QLLDL-------------------------------------PFSDGRTTEKKEKEIPLL 93
            +++                                                   E    
Sbjct: 59  DMMNKDLSKSVDNTVIEKTTNTMRKLHPVRQQKVYTYAEKQLNEQQNPDNVVSLDEAHAE 118

Query: 94  YFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
                        G+   G     +    P               D   K    SM P Y
Sbjct: 119 RNLDEQVFNVEVDGIVAAGYGAFNDDRYEPMDTVKIPDSAIPSHYDYCFKVVGDSMSPYY 178

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---------Y 202
             G+ + +     V  G   ++         K LI      + L SLN           Y
Sbjct: 179 EDGEFVFVQKTQDVTNGMIAVVDID-DMTFIKKLI-LEQDRLCLRSLNDDVDEETGKRIY 236

Query: 203 PVDTVEMSD-IEWIARIL 219
           P    + +D IE I +++
Sbjct: 237 PDFYADDTDNIEVIGKVV 254


>gi|296272637|ref|YP_003655268.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299]
 gi|296096811|gb|ADG92761.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299]
          Length = 215

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 68/216 (31%), Gaps = 16/216 (7%)

Query: 7   KKIWEAI-DRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +I E + D +++ H    +    +A   G++ T+F K K          P  E +  + 
Sbjct: 5   NEIIEKLKDILSQEHGNKKVLDKDVAAALGIEETNFRKQKHRNSI-----PYFEIMSFLA 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                      +        +      +       + +GG   +         ++  +  
Sbjct: 60  KRNISINWFFFNQLPESLIESTSNYIILKYQRTVTASAGGGAINYEL------DSTPLVI 113

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            +   + I +        K    SM P  +   ++ ++ +        + +      +  
Sbjct: 114 DKQLLDHINSRYKYTEVIKVFGESMEPDIKDESLVFIDKSKTDINSTGVYLINTNDGLYI 173

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K +       + L S N  +   T+ + D++ + R+
Sbjct: 174 KCI-KVENDKVILKSNNQAFDDITLHIDDVDIVGRV 208


>gi|225025059|ref|ZP_03714251.1| hypothetical protein EIKCOROL_01948 [Eikenella corrodens ATCC
           23834]
 gi|224942151|gb|EEG23360.1| hypothetical protein EIKCOROL_01948 [Eikenella corrodens ATCC
           23834]
          Length = 271

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 69/258 (26%), Gaps = 63/258 (24%)

Query: 18  ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
           +R   + S LAR+  +   +  K  + G E     PST ++ KI  A+   +  L     
Sbjct: 17  KRLG-SVSELARRVDVAYPTATKWVKEGAE-----PSTTNLIKIADASQVNLLWLATGQG 70

Query: 78  SDGRTT-----------------------------------------EKKEKEIPLLYFP 96
           +                                               +           
Sbjct: 71  APYLEGEQSISDELEQEGQRILQEQLKKTDQIVKSLQEARRISRIGSTQPLDVNGNAVDI 130

Query: 97  PSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPHNGIY------AIQTQDTRHKTQDTSMLP 149
                  F       G   W     P+        +      +  +  T    +  SM+ 
Sbjct: 131 DEFVFIPFYDVSVSAGQGAWVDNDRPKSCLAFRRDWLESYITSDFSTLTVVMVKGDSMVG 190

Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           +    D ++++ +      D L       +I  K +      S+ + S N  Y   TV +
Sbjct: 191 VLNDKDAILVDHSQTEAS-DGLYALRIGNEIFVKRVQRLPD-SLLITSANQEYQPFTVPL 248

Query: 210 S-------DIEWIARILW 220
                   ++  I +++W
Sbjct: 249 ENGDAASSNVSIIGKVVW 266


>gi|332560967|ref|ZP_08415285.1| putative phage repressor [Rhodobacter sphaeroides WS8N]
 gi|332274765|gb|EGJ20081.1| putative phage repressor [Rhodobacter sphaeroides WS8N]
          Length = 251

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 16/141 (11%)

Query: 97  PSGSGGFFDSGVFPTGNKWNT------VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
                    S +   G+  +         +   R     I    T     + +  SM P 
Sbjct: 105 EDYVPVPVHSALLAAGDGCDNAGDDVVDHLAFRRDWLRRIGVSLTAAALARAKGDSMSPS 164

Query: 151 YRKGDILILNSAIQVNCGDR----------LLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
              GD+L++++A                  +           K +       I L+S N 
Sbjct: 165 IHDGDMLLIDTAQDDAPFKVREPADTRPAMIYALRDDLGARVKRIERIAPGRIMLLSDNP 224

Query: 201 CYPVDTVEMSDIEWIARILWA 221
            +  +     D+  + R++W 
Sbjct: 225 AFAPEVKSDGDVTILGRVVWW 245


>gi|186476666|ref|YP_001858136.1| putative phage repressor [Burkholderia phymatum STM815]
 gi|184193125|gb|ACC71090.1| putative phage repressor [Burkholderia phymatum STM815]
          Length = 331

 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 23/221 (10%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA------------------- 64
           PS +A    LDPT+    +R       +  + E++  + A                    
Sbjct: 101 PSEIATPDNLDPTTLTGPQRIRASLGPQNLTAETLASVAAVGADVASLWLAGQGPEPTLI 160

Query: 65  ----TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                  T             T     +           +                    
Sbjct: 161 QAVALQNTYGVNSVWILKGKGTPGVAVRYDDEWRPVTFKNWHLVPVKGMAQLGDNGYWAE 220

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            E    +    ++       + +  SM P  + G+ ++L     +N GD +L+K + G +
Sbjct: 221 IEYGEGYVATASLDKDAYAVRCKGDSMRPRIKDGEYVVLEPNQPINPGDEVLVKAKDGRV 280

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           + K  +      I L+S N  +   +VE ++IE +  + W 
Sbjct: 281 MVKEFVYEAQGKIFLLSTNEAHGKISVERANIEHMHYVGWI 321


>gi|283769265|ref|ZP_06342169.1| peptidase S24-like domain protein [Bulleidia extructa W1219]
 gi|283104241|gb|EFC05620.1| peptidase S24-like domain protein [Bulleidia extructa W1219]
          Length = 275

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 69/268 (25%), Gaps = 60/268 (22%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN------------------ 50
           + E I +      L+P  L  K G D  +  + ++  IE                     
Sbjct: 5   VGERIRKRRIELKLSPEDLGNKIGKDRATIYRYEKGEIENLPVGIIAPLATALHTTPQYL 64

Query: 51  -----------RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL------ 93
                      R    ++I   L      +              + +      +      
Sbjct: 65  MGWEEDPNLTERDNDLDNISDFLFENGYRLSCENYDDDYFLIKKDGETVNSFFVGDLLSI 124

Query: 94  -----------------YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
                                +        GV P G     +   +I    + + +    
Sbjct: 125 YKNAIKNQTLSIDVFLKNSTNNFIHQIPVLGVVPCGEPIEAIE--DIIEWVDVVPSQTKD 182

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +  SM P    GDILI+    +VN G   ++K    D   K L+      I L+
Sbjct: 183 HFGLIAKGNSMSPYILDGDILIVKYTPEVNSGKIAIVKVNGDDATCKRLMINDAG-ITLI 241

Query: 197 SLNCCYPVDTVEMSDIE-----WIARIL 219
             N  Y        +++      +  ++
Sbjct: 242 PNNPLYKTKIFTPQEVQDKPVSIVGEVV 269


>gi|161831001|ref|YP_001597255.1| peptidase S24-like domain-containing protein [Coxiella burnetii RSA
           331]
 gi|81628752|sp|Q83BT6|Y1416_COXBU RecName: Full=Uncharacterized HTH-type transcriptional regulator
           CBU_1416
 gi|161762868|gb|ABX78510.1| peptidase S24-like domain protein [Coxiella burnetii RSA 331]
          Length = 216

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 19/210 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S S       +  +    ++  S LAR+ G+     ++       G+N  P   +I  
Sbjct: 1   MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118
           I       I QL+         + +           P  S           P     + V
Sbjct: 52  IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 111

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                 +  + +            Q  +M PL+  G  +I+    +    D ++++ +  
Sbjct: 112 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 165

Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
            +   + +I+       L SLN       V
Sbjct: 166 PEARLRQIITEGNDRY-LKSLNPELEKLEV 194


>gi|145640116|ref|ZP_01795706.1| putative transcriptional regulator [Haemophilus influenzae PittII]
 gi|145270773|gb|EDK10700.1| putative transcriptional regulator [Haemophilus influenzae PittII]
          Length = 251

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 97  PSGSGGFFDSGVFPTG-NKWNTVGVPEIRSP----HNGIYAIQTQDTRH-----KTQDTS 146
                  +       G   +     PEI S       G+  I  + +            S
Sbjct: 106 NYKHRIDYLDVRAAAGLTGFENSDYPEIVSSLFLSDEGLLQIIGRKSAVGIKIVNVPTDS 165

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           M P  RKGD + L++ I    GD +      G +  K +    G    L+S N  Y    
Sbjct: 166 MEPTIRKGDWVFLDTNIDYYNGDGVYAFAIDGALFIKRIQKLVGGGYRLLSDNKDYDPQD 225

Query: 207 VEMSDIEWIARIL 219
           +   +I   A+ +
Sbjct: 226 IT-DEICQTAKFV 237


>gi|320658814|gb|EFX26482.1| putative phage repressor protein [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 238

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 65/211 (30%), Gaps = 15/211 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I E I    +   LT   +A+  G+   S  K +    +     P  E+++ +    +
Sbjct: 17  NTISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSK-----PDGENLYLLSKLLS 71

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++   +L       +  + +  + P +    +                     +P I++ 
Sbjct: 72  KSPEWILYGKDGHDKADDLRLNQYPYISDNIARLPVLTWEQAGYWDMSCPVTEIPGIKNW 131

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRL-LIKPRT 177
            + +            +  +M     LP    G  +++           G  + +    T
Sbjct: 132 VDVMTKTAENSFLLHVEGDAMTNSNGLPTIPDGSTVLITPCSSNIRELVGKIILIQLEGT 191

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
            ++  K +       I L+SLN  Y    + 
Sbjct: 192 PNVTLKKVAIDGPN-IYLLSLNPLYKPIELN 221


>gi|296876982|ref|ZP_06901026.1| XRE family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432017|gb|EFH17820.1| XRE family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
          Length = 225

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 51/213 (23%), Gaps = 8/213 (3%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----NRWPSTESIFKILAATNET 68
           +        LT + +     +   +++  +    E       R     S+ +      ++
Sbjct: 7   LKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINKDS 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                 L     +    +     L       S   +                        
Sbjct: 67  ALYTYPLLTPPHQKKVDQLASQLLEQQQKVVSMTAYKVLSIELAAGLGHTFYDNETDYET 126

Query: 129 GIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +  +   D        SM PLY  G + ++        G  +      G    K +  
Sbjct: 127 VYFDQEIQHDFASWVSGDSMEPLYPNGSVALMKQTGFDYDG-AVYALIWNGKTYIKKVYR 185

Query: 188 RRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
                + L S+N  Y         + + +  ++
Sbjct: 186 -EAEGLRLESINPDYDDLFAPYEDEPKIVGIVV 217


>gi|260889630|ref|ZP_05900893.1| putative prophage LambdaCh01, repressor protein [Leptotrichia
           hofstadii F0254]
 gi|260860236|gb|EEX74736.1| putative prophage LambdaCh01, repressor protein [Leptotrichia
           hofstadii F0254]
          Length = 219

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 28/225 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAG------LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            I + +  + +++ L+   L  K        +  +  ++ +    E  +++         
Sbjct: 2   NIGKRLKELRKKNALSMDSLVEKLNRKYNLNITKSMISRWENNLSEPSSKFI-------- 53

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                 T          +        K        P         G    G  +  +   
Sbjct: 54  ------TAYAKFFNIDLNYLAGITDIKNPAPESLTPIEILEIPMYGKASAGTGYINLSEE 107

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP---LYRKGDILILNS---AIQVNCGDRLLIKP 175
               P       +      K    SM         G I I++    +   +   ++ +  
Sbjct: 108 IGTYPVPQDI-YRKGIFAIKVSGESMTGLDKSIPDGSIAIVDPELCSNPASLNGKVCVFE 166

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI-ARIL 219
              +   K LI  +   I L S N  Y    V  +++ +   R++
Sbjct: 167 YNDETYIKQLIIDKQGIIRLRSFNPSYDDIIVLNAELLYCKGRVI 211


>gi|90961224|ref|YP_535140.1| cI-like repressor, phage associated [Lactobacillus salivarius
           UCC118]
 gi|90820418|gb|ABD99057.1| cI-like repressor, phage associated [Lactobacillus salivarius
           UCC118]
          Length = 258

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 68/247 (27%), Gaps = 42/247 (17%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   ++ + +        + R+ G+  ++     +       R PS  ++ K+    N  
Sbjct: 17  ISATLNELLQLSGKKQIDITRQTGIPASTLTGYFKGT-----RLPSPVNVQKLADFFNVL 71

Query: 69  ICQLLDLP-------------------------------FSDGRTTEKKEKEIPLLYFPP 97
              +                                          + ++++   ++   
Sbjct: 72  KSDVDPRFKKISESDTDGLRIRLLSKYEKLNTENKKKVVDYADNKLKDQKRQQNKIHPIN 131

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                ++   +             E              D   +    SM P++  G I+
Sbjct: 132 ENDNTYYVDVLGSVSAGTGEWLTDEQHEEVMVNNEPPAHDFALRVNGDSMTPIFSDGQII 191

Query: 158 ILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEM-SDI 212
            +N      +V     ++     GD   K ++    R    L+SLN  Y    ++   D 
Sbjct: 192 YVNKIYDTEEVRNNQFVI-AELNGDSYVKKIVFDDNRKNCRLISLNKKYADIEIKKSDDF 250

Query: 213 EWIARIL 219
           + +  ++
Sbjct: 251 KIVGVVI 257


>gi|330900329|gb|EGH31748.1| LexA repressor [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330981302|gb|EGH79405.1| LexA repressor [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 202

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 45  --KHIVALTEAGLIEVVPHQARGIRLLNTEPRPELLEIPVLGRV-----AAGVPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 98  IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R  + I L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLQRRADQ-IRLLPRNPAYEPIIVTPDQ 187


>gi|313888262|ref|ZP_07821933.1| repressor LexA [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845665|gb|EFR33055.1| repressor LexA [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 206

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 55/215 (25%), Gaps = 29/215 (13%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +I   I R  E  +  P+   +     +  TS                   ++ K+    
Sbjct: 11  EILFFIKRFIESKSYPPTVREICAGCNIKSTSTVYY---------------ALEKLETTN 55

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                             +            P        + +    N  +T+ +P    
Sbjct: 56  YIRKDASKTRAIEIVPQDDDILMLKKKTVDVPVLGRVTAGAPILAVQNIEDTMPLPVD-- 113

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +    +    K    SM+ +    GD +I+  +     G+++ +     +   K 
Sbjct: 114 -----FVSDKELFILKVSGESMINVGIFDGDYVIIEKSNCARNGEKV-LALIEDEATIKT 167

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                     L   N        +   IE + +I+
Sbjct: 168 YYKEEN-RFRLQPENDTMEPLYFDN--IEILGKIV 199


>gi|70731061|ref|YP_260802.1| LexA repressor [Pseudomonas fluorescens Pf-5]
 gi|68345360|gb|AAY92966.1| LexA repressor [Pseudomonas fluorescens Pf-5]
          Length = 202

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 34/215 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT+ S ++  I   I      H   PS   +++  G    S  +                
Sbjct: 1   MTTLSPRRSAILTFIRERIADHGQPPSLAEISQAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K + A  E     ++   + G     + +   LL  P  G                 
Sbjct: 45  ---KHVLALTEAGFIEVNPHQARGIRLLNQPRRPELLEIPVLGRVAAGAPIGVDA----- 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
              +        G+++        + Q  SM+      GD++ +  + +V  G  ++ + 
Sbjct: 97  --DIHGQLLLDPGMFSRTPD-YLLRVQGDSMIDDGIFDGDLVAVRRSSEVRNGQTVIARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G++  K    + G+ I L+  N  Y    V   
Sbjct: 154 D-GEVTIKRFERK-GQGIRLLPRNPAYQPIEVTAD 186


>gi|212212220|ref|YP_002303156.1| repressor protein C2 [Coxiella burnetii CbuG_Q212]
 gi|212010630|gb|ACJ18011.1| repressor protein C2 [Coxiella burnetii CbuG_Q212]
          Length = 237

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 19/210 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S S       +  +    ++  S LAR+ G+     ++       G+N  P   +I  
Sbjct: 22  MASLS-----SNLKTLMTSVHINASELARRTGIAQPIIHRL----STGQNTNPKLATIKP 72

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118
           I       I QL+         + +           P  S           P     + V
Sbjct: 73  IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 132

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                 +  + +            Q  +M PL+  G  +I+    +    D ++++ +  
Sbjct: 133 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 186

Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
            +   + +I+       L SLN       V
Sbjct: 187 PEARLRQIITEGNDRY-LKSLNPELEKLEV 215


>gi|86134485|ref|ZP_01053067.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152]
 gi|85821348|gb|EAQ42495.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152]
          Length = 258

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 56/219 (25%), Gaps = 18/219 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-- 68
           + I  +     LT   LA +  +  +  +  +          P+ E +            
Sbjct: 6   KNIKHLRNLKKLTQEALAEELSVTRSRISSYEENRS-----SPTIEFLIDFSKYFKIPID 60

Query: 69  ---ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEI 123
                 L             K    P+     + +           G    ++     E 
Sbjct: 61  IIIKNDLTKANDVSFIEVGNKRVLFPITVDSENENLIEVIPAKASAGYLLGYDDPEYIEQ 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDI 180
                  +    +      +  SMLP+ + G  ++   +        G   +I  +   +
Sbjct: 121 LEKIKLPFLPTGKHRAFPIKGDSMLPM-KDGSYVVAEFVEDIKNAKSGYSYIIVTKNDGM 179

Query: 181 VAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
             K +           L   N  Y    V +S++  + +
Sbjct: 180 TYKRIENLIEEKGCFLLKPDNPSYQSYQVPISEVLELWK 218


>gi|261417204|ref|YP_003250887.1| transcriptional repressor, LexA family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373660|gb|ACX76405.1| transcriptional repressor, LexA family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 217

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 72/227 (31%), Gaps = 35/227 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPST 55
           MT+   ++I+E I + ++ +++ P+   +     +  T+  +S    +  +   NR P  
Sbjct: 11  MTAR-QEEIYEYIKKYSKENHMPPTVREIGNHFDISSTNGVRSILAALIKKGYINRSPRL 69

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
               +IL+   E+  +                          S +      G    G   
Sbjct: 70  SRGIEILSDDKESSKE------------------------VASNTIEIPIVGRVAAGTPI 105

Query: 116 NTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
             V  +    +      A ++     + +  SM+      GD++        + G+ ++ 
Sbjct: 106 LAVQNLEGTVTIDRDFLACRSDVFALRVKGDSMINAGIFDGDLIFARQQKTADLGEIVVA 165

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           +    +   K         ++L   N  Y    V    D     R++
Sbjct: 166 QID-NEATVKYYHP-SADHVELRPANPKYKPIIVNNRKDFSIAGRVI 210


>gi|221632683|ref|YP_002521904.1| LexA repressor [Thermomicrobium roseum DSM 5159]
 gi|221155504|gb|ACM04631.1| LexA repressor [Thermomicrobium roseum DSM 5159]
          Length = 214

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 55/220 (25%), Gaps = 23/220 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I E I    +     P+   +    G+  TS                +   +  +  
Sbjct: 9   QQEILEFIRHFVDERGYPPTVREIQAGLGISSTSVVDY------------NLNVLEYLRL 56

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                     +PL+    +G        +   G     V +   
Sbjct: 57  IRRNRNISRGIELLDRRLGRHDAVVRVPLVGTIAAGQPLPVLEPIEVDGAA-EYVELGSQ 115

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDIV 181
              H             + +  SM+      GDI++L        GD +     R  +  
Sbjct: 116 LVGHPA-----RDLFALRVKGQSMIDALIDDGDIVVLRRQATAENGDTVAAWLRREQETT 170

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
            K      G  + L   N         + ++E   ++L  
Sbjct: 171 LKRFYR-EGNLVRLQPANATLQPIYTTIDNVEIQGKLLLV 209


>gi|193077219|gb|ABO12009.2| transcriptional regulator Cro/CI family [Acinetobacter baumannii
           ATCC 17978]
          Length = 221

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 66/219 (30%), Gaps = 20/219 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I       NL    L R  G    + +   +  +         +S+ ++L  T  
Sbjct: 3   QVSERIRARMSELNLRHVDLMRGTGAGKATVSSWIKGAVN--PSATYIDSLAQVLKTTPT 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---GFFDSGVFPTGNKWNTVGVPEIR 124
            +        +           +  + + P  S    G +         +   + +    
Sbjct: 61  WLLTGQINDTASNMDNNVDINSMASVIYAPVLSWVQAGNWTDMDAVNIQECEKLPLVPGA 120

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRLLIKPRTGDIV 181
                      +    + +  S  P + +G+ + ++       +  G+ ++++    +  
Sbjct: 121 G---------KKSFYLEVKGLSNAPYFEEGEKICIDPDYVLEDIQTGEMVVVRC-GNEAT 170

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
            K L++       L  LN  +    + +  D   + + +
Sbjct: 171 FKALVAEPNG-YYLKPLNPNWSEQIIPLKEDCILVGKYV 208


>gi|75761245|ref|ZP_00741229.1| LexA repressor [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74491280|gb|EAO54512.1| LexA repressor [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 164

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/159 (8%), Positives = 38/159 (23%), Gaps = 10/159 (6%)

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L                +    ++ + E   +   P          +    +      +P
Sbjct: 8   LEEKGYIRRDPTKPRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPITAVESVEEHFPLP 67

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         Q    +    SM       GD++++        G+ ++      + 
Sbjct: 68  ASIVSGAD------QVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVALTEDNEA 121

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K     +     L   N       ++   +  I +++
Sbjct: 122 TVKRFYKEKD-HFRLQPENSSLEPIILK--QVSVIGKVI 157


>gi|322388988|ref|ZP_08062558.1| XRE family transcriptional regulator [Streptococcus parasanguinis
           ATCC 903]
 gi|321144293|gb|EFX39701.1| XRE family transcriptional regulator [Streptococcus parasanguinis
           ATCC 903]
          Length = 247

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 51/213 (23%), Gaps = 8/213 (3%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATNETIC 70
           +        LT + +     +   +++  +    E   +      + +            
Sbjct: 29  LKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINKDS 88

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIRSPHN 128
            L   P       +K ++    L+             V                      
Sbjct: 89  ALYTYPLLTPPHQKKVDQLASQLFEQQQKVVSLTAYKVLSVELAAGLGHTFYDNETDYET 148

Query: 129 GIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +  +   D        SM PLY  G + ++        G  +      G    K +  
Sbjct: 149 VYFDQEIQHDFASWVSGDSMEPLYPNGSVALMKQTGFDYDG-AVYALIWNGKTYIKKVYR 207

Query: 188 RRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
                + L S+N  Y         + + +  ++
Sbjct: 208 -EAEGLRLESINPDYDDLFAPYEDEPKIVGIVV 239


>gi|254524275|ref|ZP_05136330.1| LexA repressor [Stenotrophomonas sp. SKA14]
 gi|219721866|gb|EED40391.1| LexA repressor [Stenotrophomonas sp. SKA14]
          Length = 211

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 23/210 (10%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + + I + I    E      + + +AR  G          +     +    + E    I 
Sbjct: 6   TQQAILQLIAERIESEGAPPSQTEIARAFGF---------KGVRAAQYHLEALEQAGAIR 56

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               +                 +K  E  L             +   P G    +     
Sbjct: 57  RIPGQAR-----GIRLVQAPPVEKLAEPGLPDSVLRLPVLGRVAAGLPIGADIGSDDF-- 109

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + ++     D   K Q  SM+      GD++ ++     + G  ++ +    +I 
Sbjct: 110 --VVLDRVFFSPAPDYLLKVQGDSMIDEGIFDGDLIGVHRTRDAHSGQIVVARID-DEIT 166

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L+      I L+  N  Y    V    
Sbjct: 167 VK-LLKIAKDRIRLLPRNPDYRPIEVLPDQ 195


>gi|319779608|ref|YP_004130521.1| SOS-response repressor and protease LexA [Taylorella equigenitalis
           MCE9]
 gi|317109632|gb|ADU92378.1| SOS-response repressor and protease LexA [Taylorella equigenitalis
           MCE9]
          Length = 222

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 71/223 (31%), Gaps = 21/223 (9%)

Query: 2   TSFSHKKI--WEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           +  + ++I     I     +  + P  + ++   G +  S N ++               
Sbjct: 3   SKLTSRQIEVLNIIKSHISKSGIPPTRAEISSALGFN--SLNSAEMHIKA---------L 51

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + K        + + L +  +         K+        +        G    G+    
Sbjct: 52  VKKGALIAIPGVSRGLRINPAFESEFLDSVKDELSNSEASNDFLSLPIVGRVAAGSPIEA 111

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           +   E +   +     QT D   + +  SM+ +   + D+L +  A + N    ++ +  
Sbjct: 112 IEHHEDQLLFHSSIFSQTPDYLLRVKGDSMIDIGIMEDDLLAVKRADEANNRQVIVARLD 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIA 216
            G++  K L       I+L+  N  Y    +       IE IA
Sbjct: 172 -GEVTVKRLRKLPD-HIELIPENSAYKPIVIRPDQDFSIEGIA 212


>gi|213964704|ref|ZP_03392904.1| LexA repressor [Corynebacterium amycolatum SK46]
 gi|213952897|gb|EEB64279.1| LexA repressor [Corynebacterium amycolatum SK46]
          Length = 233

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 66/223 (29%), Gaps = 20/223 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR------NRWPSTES 57
            ++I + I          PS   +    GL+ TS    +   +E +         P   +
Sbjct: 16  QRRILDVISDAVVLRGYPPSIREIGDAVGLNSTSSVAYQLKELEKKGFLRRDPHKPRAVN 75

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +    ++             +    T +  +++P   F P        + +    +  + 
Sbjct: 76  VRDSKSSAGTFTPVKPGPKATGSTQTPEMPEDMPEPIFVPIVGQIAAGNPILAEQHVESH 135

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
           + +P   +          Q    K    SM+      GD +++ S   V  GD +     
Sbjct: 136 MALPMEITGS-------GQLYLLKVVGDSMVDAGILDGDWVVVRSQDVVEQGDFVAALF- 187

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             +   K           LM  N  +    +     + + +I+
Sbjct: 188 EDEATVKEWHEDAAGK-WLMPHNRAFDP--LPAEHAKILGKIV 227


>gi|160898658|ref|YP_001564240.1| putative phage repressor [Delftia acidovorans SPH-1]
 gi|160364242|gb|ABX35855.1| putative phage repressor [Delftia acidovorans SPH-1]
          Length = 236

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 71/221 (32%), Gaps = 18/221 (8%)

Query: 10  WEAIDRMAERHNL-TPSGLARKAGL------DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            E +  +  +  + +P+ LA +  L         S   +      G+   P T ++  I 
Sbjct: 4   GELLQALIAKRGIPSPNALADQIALESGGEASAGSLQSAMSRLQSGKT--PRTATMKPIA 61

Query: 63  AATN-----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                        +              +        +P          G    G+    
Sbjct: 62  EFFGLDASVFQTPEAATAAAERLGLIRDEADAPAFAGYPKHQKSKIPVVGTAKMGDDGFY 121

Query: 118 VGV---PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                 P     +   Y+        + +  SM P  R G  +I+      + G+ +LIK
Sbjct: 122 EEFSAIPGAGDGYVEHYSDDKSAYCLRVKGMSMFPAIRDGWYVIVEPNSNPSEGEYVLIK 181

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
              G  + K  + RR  SI+LMS+N      T+EM +I+ I
Sbjct: 182 KSDGRRMVKEFLFRRSGSIELMSVNGG-ARLTLEMHEIQDI 221


>gi|119776613|ref|YP_929353.1| LexA repressor [Shewanella amazonensis SB2B]
 gi|166224644|sp|A1SBC7|LEXA_SHEAM RecName: Full=LexA repressor
 gi|119769113|gb|ABM01684.1| SOS-response transcriptional repressor, LexA [Shewanella
           amazonensis SB2B]
          Length = 207

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 33/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I + I R      + P  + +A + G    S N ++             +
Sbjct: 1   MRPLTPRQAEILDLIKRNIAETGMPPTRAEIASRLGFK--SANAAEEH----------LK 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K                  +      +   +           G    G    G    
Sbjct: 49  ALAK--------------KGCIEIMPGTSRGIRLAGDELEDQPDPGLPLIGQVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + +  SM  +    GD+L ++   Q   G  ++ + 
Sbjct: 95  AQEHVEQYYQVDPAMFRPHADFLLRVRGDSMKDIGILDGDLLAVHKMNQARNGQVVVAR- 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L + N  +    V+++
Sbjct: 154 VEDDVTVKRFEKQ-GNVVYLHAENEAFAPIRVDLA 187


>gi|292496094|gb|ADE29195.1| HTH protein [uncultured virus]
          Length = 212

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 62/218 (28%), Gaps = 20/218 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +  +    +L     A K  +   ++   ++         PS   +  + A  N 
Sbjct: 3   EIAKELKLLRNELDLNQEQAAEKCDVSVGTWQSWEQG-----RHTPSAAKMDHVRATLNA 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               +                +  L     S   G   +        + +V    I +  
Sbjct: 58  RNKDVSKYVQK------DGGTQTTLPLLSVSAEAGSSSNLWQTAIKSYMSVDRSVISTET 111

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKV 184
               A   +         SM P    GD +++        +  G   + +     ++ K 
Sbjct: 112 G---ADPDRLAVVPVSGDSMEPTISAGDRVVVVRRGATPSIIEGCVYVWRSSRRGVILKR 168

Query: 185 LISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARIL 219
              R   ++ L S N  Y    ++       E + +++
Sbjct: 169 ADWRDSNTLVLSSDNDRYSDIELDWDNQEAWECLGQVV 206


>gi|253575013|ref|ZP_04852352.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845469|gb|EES73478.1| LexA repressor [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 6/179 (3%)

Query: 44  FGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
             ++ ++R      I   L        +          + + K+ +  L           
Sbjct: 40  GELDEKDRAFIKRFIELALFEKQHKNEEAAAREEHAVTSVQSKQDQPALEETSAEHVEET 99

Query: 104 FDSGVFPTGNKWN--TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILN 160
               V  T                P      I+      +    SM       GD +++ 
Sbjct: 100 LVPLVGKTAAGIEKTYYEFIRGYVPIPKE-VIKGTCFVLEVDGDSMNGDGIEHGDFVVIK 158

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               V  GD  L++    +I  K +    G  I L+S N  YP   V   +++ + + +
Sbjct: 159 QQPVVENGDIALLRI-EDEITLKRIQR-EGGKIILVSSNPAYPKRAVPERNVQVVGKYI 215


>gi|188535218|ref|YP_001909015.1| LexA repressor [Erwinia tasmaniensis Et1/99]
 gi|229621213|sp|B2VKA1|LEXA_ERWT9 RecName: Full=LexA repressor
 gi|188030260|emb|CAO98147.1| LexA repressor [Erwinia tasmaniensis Et1/99]
          Length = 202

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 3/178 (1%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  I      P+   I   L   +    +      +     E        + 
Sbjct: 8   QQQVYDLIRDHINQTGMPPTRAEIAAQLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G         E     +        D   +    SM  +    
Sbjct: 68  LMMEDESGLPLIGRVAAGEPLLAEQHIEGHYQVDPGLFKPGADFLLRVSGMSMKNIGIMD 127

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           GD+L ++    V  G  ++ +    ++  K L  + G  ++L+  N  +    V++  
Sbjct: 128 GDLLAVHKTEDVRNGQVVVARID-DEVTVKRL-KKNGNMVELLPENPDFQPIVVDLRQ 183


>gi|332187474|ref|ZP_08389211.1| peptidase S24-like family protein [Sphingomonas sp. S17]
 gi|332012403|gb|EGI54471.1| peptidase S24-like family protein [Sphingomonas sp. S17]
          Length = 205

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 20/218 (9%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S ++I  A+  +AE+  ++ + L+R  G +     +   F   G  R  +     ++  
Sbjct: 1   MSGQEIRAALQALAEQAGVSLAALSRMLGRNEAYLQQ---FVHRGSPRALAEGDRRQLAE 57

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   L                 +P L    S   G         G     V   + 
Sbjct: 58  FFGVPETGLGAAKE-------AGPLLMPRLAVAASAGPGATVDDDVMIG-----VEAIDR 105

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVA 182
           +       +     +  + +  SM P    GD L+++      N    L I      ++ 
Sbjct: 106 QLARRLGLS-DGTASVIRVRGDSMAPGLMDGDHLVVDQTDTRPNARGGLYIIRIGDVLMV 164

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
           K +     + +   S N   P   V    +  + R++W
Sbjct: 165 KRVC-AGPQGLVATSDNPAAPP--VPEGPMTVVGRVVW 199


>gi|227356913|ref|ZP_03841292.1| repressor protein CI [Proteus mirabilis ATCC 29906]
 gi|227162983|gb|EEI47928.1| repressor protein CI [Proteus mirabilis ATCC 29906]
          Length = 213

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 39/106 (36%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
                V + E  S    IY+        K +  SM P  + G+ +++     V  GD + 
Sbjct: 87  GVDGAVDMIEAHSGWLKIYSDDVDAYGLKVKGDSMWPRIQSGEYVVVEPNTSVKTGDEVF 146

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           ++   G  + K+    R       S+N  +   T+    ++ I  +
Sbjct: 147 VRTIDGHNMIKIFNKTRDGDYQFTSINNSHKPITLSPDQVDTIHYV 192


>gi|57233690|ref|YP_182333.1| LexA repressor [Dehalococcoides ethenogenes 195]
 gi|57224138|gb|AAW39195.1| LexA repressor [Dehalococcoides ethenogenes 195]
          Length = 212

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 24/224 (10%)

Query: 1   MTSFSHKK-IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M   + ++ + + I R   R+   PS   +     +  TS                + + 
Sbjct: 1   MKLTTRQRAMIDFIARFRRRYGYPPSIRDIVNGCNISSTSVVDY------------NLKI 48

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + K+     +              T E +     +            +S  F        
Sbjct: 49  LQKMGLIRRQAEISRGIELVGTEETEEGRISIPVIGQIAAGIPIPVPESDSFAVVTSDEN 108

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKP 175
           + V E  +               + +  SM   L   GD++I+     V+ G+   +   
Sbjct: 109 IEVTEDLTRGR------ENIYALRVKGVSMIEDLINDGDLVIMQHTQTVDNGETAAVWLK 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              ++  K +       + L   N   P    +  ++E   R++
Sbjct: 163 DQKEVTLKKVY-MEPGRVRLQPANRTMPPIYTQPDNVEIQGRVI 205


>gi|294789757|ref|ZP_06754988.1| prophage MuSo1, transcriptional regulator, Cro/CI family
           [Simonsiella muelleri ATCC 29453]
 gi|294482323|gb|EFG30019.1| prophage MuSo1, transcriptional regulator, Cro/CI family
           [Simonsiella muelleri ATCC 29453]
          Length = 234

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 59/215 (27%), Gaps = 24/215 (11%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI-----CQLLDLPFS 78
           P+ +A+   L   S +   R   +       T  + K L   +         +       
Sbjct: 21  PTQIAKDLNL---SISGVLRIIEKDTIPKADTLILIKKLKNCDWEWLMTGEGEPFPNSTD 77

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--------NTVGVPEIRSPHNGI 130
                +K       +          +       G+          N++           +
Sbjct: 78  KPIFWKKPTDTKGNVIDIEEFVFIPYYDIQASAGSGLWANDEKQKNSLAFRRDWLG-TFV 136

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                Q +    +  SM  +    D ++++        D L       D+  K +     
Sbjct: 137 SRNFEQLSVISVKGDSMSGVLEDRDTILIDHTQT-QPQDGLFALRIGSDVFVKRVQRFPN 195

Query: 191 RSIDLMSLNCCYPVDTVEMSD-----IEWIARILW 220
            S+ + S N  Y    + +S+     I  I +++W
Sbjct: 196 -SLFIKSANPEYEPFEINLSEETDESIAIIGKVVW 229


>gi|260588596|ref|ZP_05854509.1| repressor LexA [Blautia hansenii DSM 20583]
 gi|260541071|gb|EEX21640.1| repressor LexA [Blautia hansenii DSM 20583]
          Length = 208

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 49/219 (22%), Gaps = 30/219 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I E +          PS   +     L  TS   S              E++ K  
Sbjct: 9   KQSEILEYMKNEILNRGFPPSVREICEAVHLKSTSSVHSH------------LETLEK-- 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           D       E            +      G    G     V   +
Sbjct: 55  ----------NGYIRRDPTKPRAIEIVDDNFNLVRRETVNVPIIGKVSAGQPLLAVENID 104

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    Y    +      Q  SM+      GD +I+        G +++         
Sbjct: 105 GYFPIPSEYMPNNKTFMLVVQGDSMINAGIFNGDYVIVEQQQTAENGQKVVAL-VEDSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            K         I L   N       VE     + + +++
Sbjct: 164 VKTFYK-EDGHIRLQPENDTMEPIIVEQDQFFQILGKVI 201


>gi|240850547|ref|YP_002971947.1| putative phage repressor [Bartonella grahamii as4aup]
 gi|240267670|gb|ACS51258.1| putative phage repressor [Bartonella grahamii as4aup]
          Length = 205

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 36/216 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++    NLT   +A++  +   S +K  +   +   R  + ++I ++      
Sbjct: 6   NIISTLKKILTEFNLTQEDVAKRLNVTQASVSKWLK---DSDPRGSNRDAILELYKELKG 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                                 +PL+ +  +G+         P  +    V +P      
Sbjct: 63  DNHFTTF---------------VPLMGYIGAGTQIDPSFEQIP-EDGLEQVEIP------ 100

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAK 183
              +A+       + +  SM+P Y+ GD++I+       I+   G   +I         K
Sbjct: 101 ---FALPDDMVAFEVKGDSMIPAYKDGDMVIVRRRQIKTIESFFGKEAVILTHDNKRYIK 157

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +       IDL+S N       ++   I W+  I 
Sbjct: 158 QISRGMNGEIDLLSWNA----LPIKNVKIVWVGEIF 189


>gi|260907225|ref|ZP_05915547.1| LexA repressor [Brevibacterium linens BL2]
          Length = 251

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 57/219 (26%), Gaps = 32/219 (14%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESIFKI 61
           + E I+R    +   PS   + + AGL   S      ++ +R G     R P      ++
Sbjct: 51  VLETIERAVVTNGYPPSMREIGKAAGLASLSSVAHQLSQLERLGYV--RRDPKRPRAIEV 108

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +    E   +          T +            P          +       +   +P
Sbjct: 109 VNPFEEEEAERAKYEELANNTVQ-----------VPVVGRIAAGGPILAEQEVDDVFSLP 157

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                              K    SM        D +++      + G  +      G+ 
Sbjct: 158 TQVVGS-------GDMFLLKVVGDSMIEAAICHDDWVVVRKQHTADNGQIVAALLD-GEA 209

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L  + G    L+  N  Y       +    +  ++
Sbjct: 210 TVKTLKRKAGHQ-WLLPQNKDYEPIDGTYAQ--IMGLVV 245


>gi|218528309|ref|YP_002419125.1| phage repressor [Methylobacterium chloromethanicum CM4]
 gi|218520612|gb|ACK81197.1| putative phage repressor [Methylobacterium chloromethanicum CM4]
          Length = 230

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 65/228 (28%), Gaps = 30/228 (13%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I    E   L+ + LAR  G+      K +   +E      +T+++  ++        Q 
Sbjct: 7   IREAREARGLSQAKLARAVGVSQAIIGKIELKQVE------TTKALRALVDYLELDPSQF 60

Query: 73  LDLPFSDGR--------------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
               F                      +    P  +   +G  G         G   N +
Sbjct: 61  PPQAFGVWAGPPAADMARAFTSEPAPPEFALDPAYWATAAGLVGDIPLYAAAEGGAGNIL 120

Query: 119 GVPEIRSPHNGIYAIQT--QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
              +        + +Q             SM+P +  GD L +N  + +      +    
Sbjct: 121 IERDAIGQEKRPHELQGVKNGYAILIVGESMVPEFEPGDTLYINPKLPILPNTSCVFYSN 180

Query: 177 TGD---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI--ARIL 219
             +      K  +S +G +  +   +        E+   EW    RI+
Sbjct: 181 KNEEPTATVKRYLSDKGDAWLVRQHSP---PKDFELDRSEWATRHRIV 225


>gi|169795366|ref|YP_001713159.1| putative repressor [Acinetobacter baumannii AYE]
 gi|293609635|ref|ZP_06691937.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|169148293|emb|CAM86158.1| conserved hypothetical protein; putative repressor [Acinetobacter
           baumannii AYE]
 gi|292828087|gb|EFF86450.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 231

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 59/228 (25%), Gaps = 12/228 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERH-NLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTES 57
           M           + ++ E+  N +    A + G      ++      G  G+        
Sbjct: 1   MHMNISDIRRNNLLQLIEQKANGSQKDFANQVGTAAAYLSQIINGTIGNNGKPAAVGNPL 60

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             KI  A    +        +          ++                    + +   T
Sbjct: 61  ARKIEKAYG--LPDGFMDRENSNDARLDNNVDLKEKITTEGRLVPVISWVAAGSFSPIET 118

Query: 118 VGVPEIRSPHNGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLL 172
           V    +                  K    SMLP +  GD + +N  IQ          ++
Sbjct: 119 VLRDAVVDEFLPPNTKCGKNGYGLKITGNSMLPRFEPGDRIYVNPDIQTFDLQTNDLVIV 178

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
                 +   K LI        L  LN  +P   + +  D   + +++
Sbjct: 179 ACAGETEATFKKLIIEGNNRY-LEPLNPDWPEKIIRLTEDCRLVGKVV 225


>gi|290473773|ref|YP_003466647.1| repressor protein C2 [Xenorhabdus bovienii SS-2004]
 gi|289173080|emb|CBJ79853.1| Repressor protein C2 [Xenorhabdus bovienii SS-2004]
          Length = 238

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 78/244 (31%), Gaps = 42/244 (17%)

Query: 2   TSFSHKKIWEA--IDR----MAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
              + +++ +A  + R      ++  ++     A + G+  ++ +              +
Sbjct: 3   KKLTTEQLADAKRLKRIFVLRQKQLGISSQDAFADEFGMTQSAVSHYLNGVN-----ALN 57

Query: 55  TESIFKILAATNETICQLLDLPFSD--------------GRTTEKKEKEIPLLYFPPSGS 100
            E           +I                          T +  +K+ PLL +  +G+
Sbjct: 58  LERAADFANKLGVSIADFSPSLDQQARKLLKAVYGDDPTFATHQHPQKQYPLLNWANAGN 117

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDI 156
                + ++P  +           SPH             + +  SM        ++G I
Sbjct: 118 WCEEPAPLYPENDIEQWHETSIECSPH---------AFWLEVKGDSMASSNELNIQQGMI 168

Query: 157 LILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           ++++  ++    + ++ K     ++  K LI+    +  L  LN  Y +  +    +  +
Sbjct: 169 ILIDPDVKPMANNLVVAKLEGEKELTFKQLITEGYDAY-LKPLNPQYNMIPLN-EKVHIV 226

Query: 216 ARIL 219
             ++
Sbjct: 227 GVVI 230


>gi|237728127|ref|ZP_04558608.1| LexA [Citrobacter sp. 30_2]
 gi|283836667|ref|ZP_06356408.1| repressor LexA [Citrobacter youngae ATCC 29220]
 gi|226910138|gb|EEH96056.1| LexA [Citrobacter sp. 30_2]
 gi|291067407|gb|EFE05516.1| repressor LexA [Citrobacter youngae ATCC 29220]
          Length = 202

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRE 183


>gi|66045756|ref|YP_235597.1| LexA repressor [Pseudomonas syringae pv. syringae B728a]
 gi|63256463|gb|AAY37559.1| Peptidase S24, LexA repressor [Pseudomonas syringae pv. syringae
           B728a]
          Length = 205

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 4   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 48  --KHIVALTEAGLIEVVPHQARGIRLLNTEPRPELLEIPVLGRV-----AAGVPIGPDLD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R  + + L+  N  Y    V    
Sbjct: 157 D-GEVTIKRLQRRADQ-VRLLPRNPAYEPIIVTPDQ 190


>gi|332637910|ref|ZP_08416773.1| LexA repressor [Weissella cibaria KACC 11862]
          Length = 210

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 54/214 (25%), Gaps = 25/214 (11%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I   +          P+   +    GL  +S        ++ +                +
Sbjct: 11  ILRFVYEKQLEKGYPPTVREIGEGVGLSSSSTVHGHLNRLQKK-------------GLLH 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           +   +   +  +                 P         +    +    +   VPE    
Sbjct: 58  KDPDKPRAIEVTPAGVEALGVTTRNQNMMPVLDEHEAIPASNEDSDYIVDYFPVPENLVR 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                         + +  +ML +    GD +I+      + GD ++ +   G    K L
Sbjct: 118 F------DGDLFMLRLRGNAMLNIGMLDGDFVIVRRQNDADNGDIVVARDEVGQTHIKRL 171

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 +  L   N       V   D+  + +++
Sbjct: 172 FR-EADAYRLQPENDNMTPIIVR--DLTILGKVV 202


>gi|254448052|ref|ZP_05061516.1| LexA repressor [gamma proteobacterium HTCC5015]
 gi|198262478|gb|EDY86759.1| LexA repressor [gamma proteobacterium HTCC5015]
          Length = 196

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 3/141 (2%)

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
              G     K      +       G     G    G     V   + +          + 
Sbjct: 49  EEQGYIERSKRHRGIRVLDEQVSPGTLPLMGRIAAGQPIEAV--NDQQQLDLNSLFAGSN 106

Query: 137 DTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
               + +  SM       GD +++ SA     GD ++      D   K +  R G  + L
Sbjct: 107 RYALQVKGDSMVEAGICDGDWVVIESAQTARNGDIVVALVDDEDATLKTIDYRAGGQVAL 166

Query: 196 MSLNCCYPVDTVEMSDIEWIA 216
           +  N            ++   
Sbjct: 167 IPSNSAMEAMVYPEERVQIQG 187


>gi|145301042|ref|YP_001143883.1| LexA repressor [Aeromonas salmonicida subsp. salmonicida A449]
 gi|166224550|sp|A4STB3|LEXA_AERS4 RecName: Full=LexA repressor
 gi|142853814|gb|ABO92135.1| LexA repressor [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 207

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 62/215 (28%), Gaps = 33/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ E I        + P  + +A+K G    S N ++             +
Sbjct: 1   MKPLTPRQAEVLELIKVNMSETGMPPTRAEIAQKLGFK--SANAAEEH----------LK 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K                  +      +   + +         G    G    G    
Sbjct: 49  ALAK--------------KGVIEIMPGTSRGIRLLIEEEAVLEETGLPLIGKVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + Q  SM  +    GD+L ++   +V  G  ++ + 
Sbjct: 95  AQEHIESHYQVDPALFHPRADFLLRVQGMSMKNIGILDGDLLAVHKTQEVRNGQVVVARL 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L+  N       V++S
Sbjct: 155 D-EDVTVKRFQRK-GSQVWLLPENEELEPIAVDLS 187


>gi|307246024|ref|ZP_07528106.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306852959|gb|EFM85182.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 210

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 34/218 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I++ +    E   + P+   +AR+ G    +                + E   K LA
Sbjct: 10  QQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 53

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                ++           +   G    G    G     +   E 
Sbjct: 54  RKGYIEMLSGTSRGIRILVDNEE---------TAANDDGLPLIGKVAAGTPIIAIEHVES 104

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG       D   K    SM  +    GD+L ++       G  ++ +    ++  
Sbjct: 105 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVD-DEVTV 163

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       V+      +IE IA
Sbjct: 164 KRLEKK-GDLIYLHPENDELQPIIVDPRIEYIEIEGIA 200


>gi|221195372|ref|ZP_03568427.1| LexA repressor [Atopobium rimae ATCC 49626]
 gi|221184559|gb|EEE16951.1| LexA repressor [Atopobium rimae ATCC 49626]
          Length = 225

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 55/209 (26%), Gaps = 16/209 (7%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           +    A  AGL PT+       G+ G       E + KI       +   +    +D   
Sbjct: 17  SVKKFAECAGLPPTTVYNVLTRGVSGS----GFEIVQKIYNTLG--LHYTVRGFETDYDY 70

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
            + + K    L     G       G    G       V         I            
Sbjct: 71  EDLRAKRDEYLNKRNGGFVEVPLLGRIAAGVPIKMDLVETTVLCPAEIRRRHPNAFFLTV 130

Query: 143 QDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN- 199
              SM  +   G   +++   +  V  G    +     D   K +       ++L+  + 
Sbjct: 131 DGESMNNVLPNGCYALVDPEKKSPVVDGTAYAVCVNGYDATIKRIKQLENG-VELIPDSK 189

Query: 200 -CCYPVDTVEM-----SDIEWIARILWAS 222
              +     +        I  I  ++W S
Sbjct: 190 DPTFHAQVYDKTVEGTESITIIGEVVWYS 218


>gi|227534136|ref|ZP_03964185.1| XRE family transcriptional regulator [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227188243|gb|EEI68310.1| XRE family transcriptional regulator [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 227

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 70/221 (31%), Gaps = 17/221 (7%)

Query: 14  DRMAERHN-LTPSGLARKA-G-LDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETI 69
           D + +    ++    ++++ G +   +  ++++     G+   PS E++ +     N + 
Sbjct: 6   DYLRQLRGTMSLREASQRSHGRISHAAIAQAEKGINSHGKPFTPSAETLKEFAKLYNVST 65

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-----PTGNKWNTVGVPEIR 124
            +L+ +     ++++     IP+           +             +    + VP+  
Sbjct: 66  TKLMKMAGYIEKSSDLPSNAIPVSSEEADQPVMVYGEIQAGVAKWAEQDIIGQINVPKSF 125

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           +   G           K    SM      G   + +  ++   GD + +   +     K 
Sbjct: 126 AKRYGA----KNLFALKVDGESMNREIPNGYTAVFSKDLEPESGDIVAVMIDSESATIKR 181

Query: 185 LISRR-GRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221
                     +  S +  +           D + I + L+A
Sbjct: 182 FRETSLAVMFEPSSWDPSFKPYVFPKDGIQDFKIIGKFLYA 222


>gi|193070021|ref|ZP_03050968.1| repressor protein C2 [Escherichia coli E110019]
 gi|260867149|ref|YP_003233551.1| putative phage repressor protein [Escherichia coli O111:H- str.
           11128]
 gi|192956618|gb|EDV87074.1| repressor protein C2 [Escherichia coli E110019]
 gi|257763505|dbj|BAI35000.1| putative phage repressor protein [Escherichia coli O111:H- str.
           11128]
 gi|323175391|gb|EFZ60986.1| helix-turn-helix family protein [Escherichia coli 1180]
          Length = 224

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 65/211 (30%), Gaps = 15/211 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I E I    +   LT   +A+  G+   S  K +    +     P  E+++ +    +
Sbjct: 3   NTISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSK-----PDGENLYLLSKLLS 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++   +L       +  + +  + P +    +                     +P I++ 
Sbjct: 58  KSPEWILYGKDGHDKADDLRLNQYPYISDNIARLPVLTWEQAGYWDMSCPVTEIPGIKNW 117

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRL-LIKPRT 177
            + +            +  +M     LP    G  +++           G  + +    T
Sbjct: 118 VDVMTKTAENSFLLHVEGDAMTNSNGLPTIPDGSTVLITPCSSNIRELVGKIILIQLEGT 177

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
            ++  K +       I L+SLN  Y    + 
Sbjct: 178 PNVTLKKVAIDGPN-IYLLSLNPLYKPIELN 207


>gi|332853417|ref|ZP_08434736.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332870600|ref|ZP_08439342.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
 gi|332728623|gb|EGJ59991.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332732160|gb|EGJ63429.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
          Length = 263

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 71/228 (31%), Gaps = 19/228 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M    +K   + ++ + +  +    T + L +  G+      +        + R    ++
Sbjct: 39  MEDAKYKDFADRLNALMKAKDSPIKTINELKKAIGVSYEMARRYTLGTA--KPRIEKLQT 96

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  I      +         ++   ++K   E   +      + G F        +    
Sbjct: 97  LADIFGV-EISYLDHGTKLDNNIDLSDKVGFEGRRVPVISWVAAGSFTPIETVLKDTEIE 155

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIK 174
             +P  R                K    SM P +  GD + +N  IQ       D +++ 
Sbjct: 156 EYLPPNRR-------CGKNGYALKVVGYSMAPTFLPGDRIYVNPDIQTFDLKTDDLVIVA 208

Query: 175 PRTG-DIVAKVLISRRGRSID-LMSLNCCYPVDTVEM-SDIEWIARIL 219
                +   K LI     +   L  LN  +P   +++  D   + +++
Sbjct: 209 CAGDSEATFKKLIIEGEGTSKFLEPLNSDWPDKIIKLSEDCRLVGKVV 256


>gi|124005663|ref|ZP_01690502.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134]
 gi|123988731|gb|EAY28337.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134]
          Length = 255

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 15/223 (6%)

Query: 3   SFSHKKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               + I   +  +       T S +A+  G+  +++   +          P    + KI
Sbjct: 1   MKKRRLIAHNLKYLRSEVKKTTQSRVAKHLGISRSAWVDYELGKA-----LPKANVLIKI 55

Query: 62  LAATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTV 118
                 +I  L           +    + IP+           F       G    +   
Sbjct: 56  AEYFGVSIDDLLKVNLKKKTIPSVNNIRLIPVETTGKVTQNIDFIPVKAKAGYSQGYGEE 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKP 175
              +                  + +  SM P  + G I+I   + +   +    R ++  
Sbjct: 116 SYIKELFRFTLPKLPDGNYRAFEIEGDSM-PPLQDGFIVIGKYIENFHNIKNNHRYIVLL 174

Query: 176 RTGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +   +V K +I+   + + + L+S N  Y   +V + ++  I 
Sbjct: 175 KEEGVVFKKVINEVSKNQQLLLVSDNTNYLPYSVNIDEVLEIW 217


>gi|149003996|ref|ZP_01828803.1| phage transcriptional repressor [Streptococcus pneumoniae
           SP14-BS69]
 gi|147757978|gb|EDK64985.1| phage transcriptional repressor [Streptococcus pneumoniae
           SP14-BS69]
          Length = 252

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 69/253 (27%), Gaps = 48/253 (18%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI----- 61
             + + I    +   LT   LA+K  + PT+ +  +    +      + E +  I     
Sbjct: 2   DSLAQNIKYYRKLSGLTQKELAKKLSVAPTAISAWEVGRNQ--PLMNNIEQMSAIFGIKK 59

Query: 62  ---LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT------- 111
              L     +       P        K  ++  +L +         +             
Sbjct: 60  SLLLGEDFSSHVDKATSPIQTIYDELKPPRQAKVLNYAKRQLDEQKNEEETKINEVSEKV 119

Query: 112 --------------------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
                               G  ++      I             D   K    SM P Y
Sbjct: 120 LDLYQVEVVSETAAASGFNYGFGYDDTDREIIEVDEQP----PHHDIATKVSGDSMQPDY 175

Query: 152 RKGDIL-ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-- 208
           + GDIL +++  +    GD  +I         K +       + L+SLN  Y    ++  
Sbjct: 176 QDGDILYLVDKGLTTYNGDLAVIAY-GDRSYFKKIY-TENGRLRLVSLNDKYEDIILDFP 233

Query: 209 -MSDIEW-IARIL 219
              D    I  ++
Sbjct: 234 PAEDTHIKIYAVV 246


>gi|187476916|ref|YP_784940.1| phage repressor protein [Bordetella avium 197N]
 gi|115421502|emb|CAJ48011.1| Putative phage repressor protein [Bordetella avium 197N]
          Length = 317

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 81/297 (27%), Gaps = 76/297 (25%)

Query: 1   MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSK---RFGIEGRNRWPS-- 54
           M   S   I  A + R+ ++H    + LA+ +G+  T+ +      R       + PS  
Sbjct: 6   MKKRSINDILAANLSRLMDKHGHKQASLAKLSGIGQTTISLYLNPDRRQPSKSGKLPSAK 65

Query: 55  ---TESIFKILAATNETICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFD-- 105
               E + ++L  +   +    D    +        +  ++  P+     +         
Sbjct: 66  LSEVEVLAEVLGVSPWELLTPHDHAQPNSAAADSHAQAPKRGTPIDMDAVADEFPMRIPG 125

Query: 106 -------------------------------------------------SGVFPTGNKWN 116
                                                                  G    
Sbjct: 126 LPPGPSQIDEPAPAYVAPRLSLEQAVAVNVAPGEHHAANDKFEKVPELADVRLAAGEGIE 185

Query: 117 TVGVP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNC- 167
                        RS    + A   +      +  SM P+ R G  L++  + ++ ++  
Sbjct: 186 NHTEEMTGFVQFRRSFLRAVGADGGRGRVVYAKGDSMEPIIRDGAALLVAIDQSLTLHDV 245

Query: 168 -GDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSD-IEWIARILWA 221
               +      G ++ K +   R        S N  +P   +E +  +  + R++WA
Sbjct: 246 AAGGVYAINYDGKMLVKTVAKDRLTGRWVARSFNAQHPDIPLEGNGLVRVLGRVVWA 302


>gi|94264776|ref|ZP_01288554.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
 gi|94264785|ref|ZP_01288563.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
 gi|93454765|gb|EAT05020.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
 gi|93454774|gb|EAT05029.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
          Length = 145

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V        +  + A        +    SM+       DIL+++ +++   G R++
Sbjct: 36  AEDYVE--GQLDLNQLMVAHPAATFFVRVVGDSMIGAGIHHDDILVVDRSLEPVSG-RVV 92

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I    G++  K L      +  L++ N  YP   +       +  ++
Sbjct: 93  IAVINGELTVKRLFRH-NGTARLLAENPNYPPIELTEEAACEVWGVV 138


>gi|86141830|ref|ZP_01060354.1| hypothetical protein MED217_01825 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831393|gb|EAQ49849.1| hypothetical protein MED217_01825 [Leeuwenhoekiella blandensis
           MED217]
          Length = 256

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 69/218 (31%), Gaps = 18/218 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
               ++ E  NLT S  A   G+  ++    +R   +      S + + ++L   N    
Sbjct: 11  RRFKQIREEQNLTQSEFAEALGIKNST-ADIERGRTK-----LSGQIVTELLRLYNVNPL 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L            K +    ++    + +              +               
Sbjct: 65  WLFGYSNQKLLHAGKGDVSPKVVTVDIADNENLVMVNQKAA-AGYPHNVQDVEWYQQLPA 123

Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIV 181
           + +             + +  SMLP +   D ++   + S  +     ++ +      +V
Sbjct: 124 FDLPLPQYRNATYRGFQIEGDSMLPNFMPDDWVLGKAIASMDEAYNN-KVYVVVLPDAVV 182

Query: 182 AKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            K L        + L+SLN  Y    V++SDI+ + ++
Sbjct: 183 VKKLQKLPDPSKVLLISLNQEYLPFEVQVSDIQELWQV 220


>gi|124008127|ref|ZP_01692825.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC
           23134]
 gi|123986375|gb|EAY26188.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC
           23134]
          Length = 269

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 69/228 (30%), Gaps = 26/228 (11%)

Query: 11  EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET- 68
           + +  + ER+   T   LA   G+  ++ +  +    E     P    + +I    N T 
Sbjct: 5   KNLKHLRERNGKQTQENLANALGITRSAISSYEDGRAE-----PKLVVMNRIAQYFNITL 59

Query: 69  ------------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--K 114
                          L          + +  + + +     +             G    
Sbjct: 60  DQLLNVELATLGDVDLQQQKEVKKYASAENLRILTITTDRENNENIELVPEKAAAGYTKG 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDT-RHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRL 171
           +      +    +   +  + +     +    SMLPL  +  ++   + +  +V  G   
Sbjct: 120 YADAEYLKDLPKYQLPFLPEGRTYRAFEIAGESMLPLLPESIVIGEYVANWNEVQEGQTC 179

Query: 172 LIKPRTGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           ++  +   +V K + ++     +  L S N  Y    V   ++  I +
Sbjct: 180 VVVAKNDGVVLKKVYNKITERGTFLLKSSNIAYQPYEVSADEVVEIWK 227


>gi|16762918|ref|NP_458535.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16767487|ref|NP_463102.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29144405|ref|NP_807747.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56416037|ref|YP_153112.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182686|ref|YP_219103.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161505300|ref|YP_001572412.1| LexA repressor [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|161617365|ref|YP_001591330.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167552539|ref|ZP_02346292.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167991426|ref|ZP_02572525.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168231233|ref|ZP_02656291.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168239348|ref|ZP_02664406.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168243634|ref|ZP_02668566.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168263442|ref|ZP_02685415.1| LexA repressor [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168466919|ref|ZP_02700767.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194446691|ref|YP_002043488.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194449839|ref|YP_002048228.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472176|ref|ZP_03078160.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194738283|ref|YP_002117116.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197247736|ref|YP_002149151.1| LexA repressor [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197263236|ref|ZP_03163310.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364964|ref|YP_002144601.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198244996|ref|YP_002218132.1| LexA repressor [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|200388085|ref|ZP_03214697.1| LexA repressor [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204927146|ref|ZP_03218348.1| LexA repressor [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205355009|ref|YP_002228810.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859391|ref|YP_002246042.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213052230|ref|ZP_03345108.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213423564|ref|ZP_03356544.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213424504|ref|ZP_03357301.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213619392|ref|ZP_03373218.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213647510|ref|ZP_03377563.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213859894|ref|ZP_03385598.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|224586003|ref|YP_002639802.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238913014|ref|ZP_04656851.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289824645|ref|ZP_06544172.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|61227645|sp|P0A273|LEXA_SALTY RecName: Full=LexA repressor
 gi|61227646|sp|P0A274|LEXA_SALTI RecName: Full=LexA repressor
 gi|71648702|sp|Q57GZ0|LEXA_SALCH RecName: Full=LexA repressor
 gi|71648703|sp|Q5PL14|LEXA_SALPA RecName: Full=LexA repressor
 gi|189046544|sp|A9MGP6|LEXA_SALAR RecName: Full=LexA repressor
 gi|189046545|sp|A9N1L6|LEXA_SALPB RecName: Full=LexA repressor
 gi|226694239|sp|B5F1Q6|LEXA_SALA4 RecName: Full=LexA repressor
 gi|226694240|sp|B5FQR1|LEXA_SALDC RecName: Full=LexA repressor
 gi|226694241|sp|B5QZ62|LEXA_SALEP RecName: Full=LexA repressor
 gi|226694242|sp|B5R7T6|LEXA_SALG2 RecName: Full=LexA repressor
 gi|229621745|sp|B4TDM0|LEXA_SALHS RecName: Full=LexA repressor
 gi|229621746|sp|B4T1T2|LEXA_SALNS RecName: Full=LexA repressor
 gi|229621747|sp|B5BJW0|LEXA_SALPK RecName: Full=LexA repressor
 gi|229621748|sp|B4TQQ5|LEXA_SALSV RecName: Full=LexA repressor
 gi|254809105|sp|C0Q514|LEXA_SALPC RecName: Full=LexA repressor
 gi|25300634|pir||AD1015 repressor LexA (EC 3.4.21.88) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|47766|emb|CAA44731.1| lexA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16422795|gb|AAL23061.1| SOS response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16505225|emb|CAD09221.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29140043|gb|AAO71607.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56130294|gb|AAV79800.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130319|gb|AAX68022.1| SOS response regulator, transcriptional repressor (LexA family)
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|160866647|gb|ABX23270.1| hypothetical protein SARI_03441 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161366729|gb|ABX70497.1| hypothetical protein SPAB_05220 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405354|gb|ACF65576.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408143|gb|ACF68362.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458540|gb|EDX47379.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194713785|gb|ACF93006.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195630596|gb|EDX49208.1| LexA repressor [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197096441|emb|CAR62047.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197211439|gb|ACH48836.1| LexA repressor [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197241491|gb|EDY24111.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197287939|gb|EDY27327.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939512|gb|ACH76845.1| LexA repressor [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199605183|gb|EDZ03728.1| LexA repressor [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204323811|gb|EDZ09006.1| LexA repressor [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205274790|emb|CAR39849.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322831|gb|EDZ10670.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330205|gb|EDZ16969.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205334379|gb|EDZ21143.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205337302|gb|EDZ24066.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205347902|gb|EDZ34533.1| LexA repressor [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206711194|emb|CAR35570.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470531|gb|ACN48361.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249335|emb|CBG27198.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996548|gb|ACY91433.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160730|emb|CBW20261.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915342|dbj|BAJ39316.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223105|gb|EFX48175.1| SOS-response repressor and protease LexA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322615393|gb|EFY12313.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618454|gb|EFY15343.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622135|gb|EFY18985.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627205|gb|EFY23997.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631166|gb|EFY27930.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637616|gb|EFY34317.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642582|gb|EFY39179.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322643598|gb|EFY40153.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648334|gb|EFY44793.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654643|gb|EFY50963.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659603|gb|EFY55846.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662189|gb|EFY58405.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666066|gb|EFY62244.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672486|gb|EFY68597.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675915|gb|EFY71986.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680399|gb|EFY76437.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684706|gb|EFY80710.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322717185|gb|EFZ08756.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323132576|gb|ADX20006.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195970|gb|EFZ81136.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197100|gb|EFZ82241.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201782|gb|EFZ86846.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206296|gb|EFZ91258.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213308|gb|EFZ98110.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215677|gb|EGA00421.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222100|gb|EGA06486.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226512|gb|EGA10718.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229137|gb|EGA13266.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236254|gb|EGA20330.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237627|gb|EGA21688.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241708|gb|EGA25737.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248145|gb|EGA32082.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254524|gb|EGA38335.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258416|gb|EGA42093.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323259695|gb|EGA43329.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265968|gb|EGA49464.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270410|gb|EGA53858.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625929|gb|EGE32274.1| LexA repressor [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326630161|gb|EGE36504.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332991053|gb|AEF10036.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 202

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFTPIVVDLRE 183


>gi|330831583|ref|YP_004394535.1| LexA repressor [Aeromonas veronii B565]
 gi|328806719|gb|AEB51918.1| LexA repressor [Aeromonas veronii B565]
          Length = 207

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 33/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ E I        + P  + +A+K G    S N ++             +
Sbjct: 1   MKPLTPRQAEVLELIKVNMSETGMPPTRAEIAQKLGFK--SANAAEEH----------LK 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K                  +      +   + L         G    G    G    
Sbjct: 49  ALAK--------------KGVIEIMPGTSRGIRLLLEEEEVLEESGLPLIGKVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + Q  SM  +    GD+L ++   +V  G  ++ + 
Sbjct: 95  AQEHIESHYQVDPALFHPRADFLLRVQGMSMKNIGILDGDLLAVHKTQEVRNGQVVVARL 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L+  N       V++S
Sbjct: 155 D-EDVTVKRFQRK-GSQVWLLPENEELSPIEVDLS 187


>gi|239834287|ref|ZP_04682615.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
 gi|239822350|gb|EEQ93919.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
          Length = 264

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 67/251 (26%), Gaps = 39/251 (15%)

Query: 2   TSFSHKKIWEA-------------------IDRMAERHNLTPSGLARKAGLDPTSFNKSK 42
           +  +H  I+                     +       +++ + LA   G D ++ +  +
Sbjct: 14  SMSTHDDIFARYNFTTICEKPIMDKDFAFRLKNARVARDMSQAQLADLVGRDKSAISLLE 73

Query: 43  RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
                   R  S + + ++  A N     L           E+ E E P   F P    G
Sbjct: 74  SG-----KRGASVDFVARLAKALNVREDWLAFEKGDMIGQEERAELERPADIFTPKLIPG 128

Query: 103 FF-------DSGVFPTGNKWNTVGV---PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR 152
                                 V +   P        +               SM+P YR
Sbjct: 129 NELVGDQRDLPVYAAAKGGDGHVIITFDPISYMKMPAVLQGVKGGYGLLLSGESMVPAYR 188

Query: 153 KGDILILNSAIQVNCGDRLLIKP----RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
            G+  ++N  +     + +++         + + K L+    R   L   N         
Sbjct: 189 PGETALVNPNLPPMRDEDVILYHTSEMDENEAIIKRLVGYNDREWMLEQYNPHKEFKEFR 248

Query: 209 MSDIEWIARIL 219
             D     R++
Sbjct: 249 A-DWPVCHRVV 258


>gi|157373341|ref|YP_001471941.1| LexA repressor [Shewanella sediminis HAW-EB3]
 gi|189046549|sp|A8FPP0|LEXA_SHESH RecName: Full=LexA repressor
 gi|157315715|gb|ABV34813.1| Repressor lexA [Shewanella sediminis HAW-EB3]
          Length = 206

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 63/214 (29%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A++ G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIADTGMPPTRAEIAKRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                     + E+E+ L                   G    
Sbjct: 45  EHLKALAKKGCIEIIPGTSRGIRLTQANESEEELGLPLIGQ-----------VAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   + +  SM  +   +GD+L ++ A Q   G  ++ + 
Sbjct: 94  AQEHVEQHYQIDPAMFRPSADFLLRVRGDSMKNIGILEGDLLAVHKAEQARNGQVVVAR- 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K    + G  + L + N  Y    V++
Sbjct: 153 VEDDVTVKRFEKK-GSIVYLHAENEDYSPIVVDL 185


>gi|94263325|ref|ZP_01287140.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
 gi|93456280|gb|EAT06410.1| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1]
          Length = 145

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V        +  + A        +    SM+       DIL+++ +++   G R++
Sbjct: 36  AEDYVE--GQLDLNQLMVAHPAATFFVRVAGDSMIGAGIHHDDILVVDRSLEPTSG-RVV 92

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I    G++  K L      +  L++ N  YP   +       +  ++
Sbjct: 93  IAVINGELTVKRLFRH-NGTARLLAENPNYPPIELTEEAACEVWGVV 138


>gi|260170722|ref|ZP_05757134.1| putative phage repressor [Bacteroides sp. D2]
 gi|315919062|ref|ZP_07915302.1| predicted protein [Bacteroides sp. D2]
 gi|313692937|gb|EFS29772.1| predicted protein [Bacteroides sp. D2]
          Length = 223

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 64/216 (29%), Gaps = 21/216 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR------WPSTESIFKI 61
           +I + I    E   +  +      G+    F+  K  G +   R        + E +   
Sbjct: 2   EIVDRIKLFREYLGIGQTAFEVNIGVARGYFSNVKTLGSDRILRIHTKYPELNIEWLVTG 61

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                +   +             + +++  L+Y   +  G       F       ++  P
Sbjct: 62  NGEMIKNAEREQKTIEISESAISETKRKGALIYDIDATCGLSGRDIEFTDEKVIGSIDAP 121

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNCGDRLLIKPRTGD 179
           EI S    I+A             SMLPL   GD +++    +       ++ +      
Sbjct: 122 EINSDSKIIFA----------TGDSMLPLIASGDRVVIRKIESWDYFNYGQVYLIITNEY 171

Query: 180 IVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDI 212
            + K +          I L S N  Y    +   +I
Sbjct: 172 RLIKRVRRHPKDADNLILLRSENPDYDDIDLPKREI 207


>gi|210613656|ref|ZP_03289815.1| hypothetical protein CLONEX_02022 [Clostridium nexile DSM 1787]
 gi|210151086|gb|EEA82094.1| hypothetical protein CLONEX_02022 [Clostridium nexile DSM 1787]
          Length = 200

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 56/213 (26%), Gaps = 49/213 (23%)

Query: 7   KKIWEAIDRMAERHNL----TP--SGLARKAGLDPTSFNKSK-----RFGIEGRNRWPST 55
           +++ + I   AE+  L    +P  S +A   G+  ++  K       R  +  RN    T
Sbjct: 6   EELMKQIMDYAEQFQLLNHRSPYTSEIADALGIVKSTVYKYLVAMNDRGMLSYRNGEIVT 65

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   KI   T                                                  
Sbjct: 66  ERTNKISLLTKP----------------------------AAVLGSVSCGMPQLEEEYIE 97

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
             V +P            + +    +    SM+      GD++++      + GD ++  
Sbjct: 98  EYVSLPVSLFG-------EGEFFILRASGDSMIGAGINSGDMIVIRKQNTASDGDIVVAL 150

Query: 175 PRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDT 206
               +   K       R  + L   N  YP   
Sbjct: 151 VD-NESTLKRFFLDTERRCVRLHPENPKYPDIY 182


>gi|317151917|ref|YP_004119965.1| CI repressor [Desulfovibrio aespoeensis Aspo-2]
 gi|316942168|gb|ADU61219.1| CI repressor [Desulfovibrio aespoeensis Aspo-2]
          Length = 240

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 9/220 (4%)

Query: 11  EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           EA++R+ +     T   LA    +  +S + +KR        +        +        
Sbjct: 18  EALERIKKATGARTQVQLAEVLDVRQSSISDAKRRCSIPAEWFLKLYRSHGLDPDWLSEG 77

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSP 126
            + + +  +  +             +    S G         G           P     
Sbjct: 78  VEPVYINAAKAKIPADTLLRETPAPYGRMNSRGRVVPVSTMAGADKEKASWEPNPIEELS 137

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVL 185
               +         K    +M P+  +   + ++    +   GD   +      +  + +
Sbjct: 138 VPESFCRPK-LQVVKVDSAAMEPVIGRAAFVGIDRDQREHPDGDLCAVHFPHQGLTIRRV 196

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
             + G +  L + N  Y   T+  S++    + R++W  Q
Sbjct: 197 FMQ-GDTFLLKADNEKYTDLTIPASEMGERTVGRVIWVLQ 235


>gi|91794862|ref|YP_564513.1| LexA repressor [Shewanella denitrificans OS217]
 gi|123060542|sp|Q12ID6|LEXA_SHEDO RecName: Full=LexA repressor
 gi|91716864|gb|ABE56790.1| SOS-response transcriptional repressor, LexA [Shewanella
           denitrificans OS217]
          Length = 205

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 57/214 (26%), Gaps = 35/214 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A + G                     + E
Sbjct: 1   MRPLTPRQTEILELIKRNIADTGMPPTRAEIATRLGFKSA---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                          + I L         G    G    G    
Sbjct: 46  HLKALAKK-------------GCIEIMPGTSRGIRLTQEDAEVELGLPLIGQVAAGEPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        +   + +  SM  +   +GD+L ++   +   G  ++ + 
Sbjct: 93  AQEHVEQYFQVDPHMFKPAANFLLRVRGDSMKNIGILEGDLLAVHKMQEAKNGQVVVAR- 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K    + G  I L + N  Y    V++
Sbjct: 152 VEDDVTVKRFEKK-GNVIYLHAENEDYAPIKVDL 184


>gi|237752435|ref|ZP_04582915.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375924|gb|EEO26015.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 209

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 69/223 (30%), Gaps = 24/223 (10%)

Query: 1   MTSFSHKKIWEAI-DRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M     ++I E + D +A     +     +A+   + P +FN  K               
Sbjct: 1   MDM---EEIIEKLKDILASEGQKSVKTIDVAKALNIHPDTFNSMKFRNSIPYK------Q 51

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           I   L   N +I               + +  I  LY   +  GG         G     
Sbjct: 52  ILNFLEKRNISINYFFFGSSPKESLQSEDKYRILKLYKTNASLGG---------GGINEF 102

Query: 118 VGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           V   EI   +  + +          +   SM P+ + G I +L+  I+      +     
Sbjct: 103 VECQEIIIDNALLHFFQSQNCELITSFGESMEPIIKDGSICVLDK-IKPFKDKGIYGVNT 161

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +  K +  +    I L SLN  Y     E  +   I R++
Sbjct: 162 REGLFVKQVFKQENGVI-LHSLNPIYQDLFFENGEYLIIGRVI 203


>gi|313105661|ref|ZP_07791925.1| hypothetical protein PA39016_000100021 [Pseudomonas aeruginosa
           39016]
 gi|310878427|gb|EFQ37021.1| hypothetical protein PA39016_000100021 [Pseudomonas aeruginosa
           39016]
          Length = 261

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +  P      +G+               SM PL   G ++ ++ ++       +      
Sbjct: 146 IRFPRSVLHESGV--NPKCAVCVNVTGNSMEPLIADGAVIGIDMSVNAITDGEIYALKHD 203

Query: 178 GDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS-----DIEWIARILWAS 222
             +  K +    G  I L S N   YP +          DI  I  + W S
Sbjct: 204 DLLRVKFVYRLPGGGIRLRSYNRDEYPDEEYTRDQMRAGDISVIGWVFWWS 254


>gi|229119313|ref|ZP_04248616.1| hypothetical phagelike protein [Bacillus cereus Rock1-3]
 gi|228664179|gb|EEL19717.1| hypothetical phagelike protein [Bacillus cereus Rock1-3]
          Length = 228

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 18/221 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I    +   +T   L  + G    + +  +    E         +I + L  +   
Sbjct: 9   VGQQIKNFRKLKKMTQKELGLRIGKKHNTISSYENGTNE--PEQDVLFAIAQALDISIND 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +    +  +     T    +E    Y P S S G        T     T+ +P+      
Sbjct: 67  LFPPTNEVYKTNTPTISLVRESSYTYVPTSISAGLPLEIDGMTEMDLETIHIPDAL---M 123

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGDIVAKVLI 186
           G +A +      +    SM  +     ++ +      ++   D ++      D   K   
Sbjct: 124 GKWAGREDIFMTRVNGDSMNKVIPHTSLIAVKEVALEELYDNDIVV-FSNGCDYSVKRFF 182

Query: 187 S-RRGRSIDLMSLNCCYPVDTV-------EMSDIEWIARIL 219
           + +  + +        Y            + ++I+   +++
Sbjct: 183 NDKENKRLIFRPD--SYDNRFFDYTVPYEDAANIKIHGKVV 221


>gi|292489790|ref|YP_003532680.1| regulator for SOS(LexA) regulon [Erwinia amylovora CFBP1430]
 gi|292897996|ref|YP_003537365.1| LexA repressor [Erwinia amylovora ATCC 49946]
 gi|291197844|emb|CBJ44939.1| LexA repressor [Erwinia amylovora ATCC 49946]
 gi|291555227|emb|CBA23483.1| regulator for SOS(LexA) regulon [Erwinia amylovora CFBP1430]
 gi|312173975|emb|CBX82229.1| regulator for SOS(LexA) regulon [Erwinia amylovora ATCC BAA-2158]
          Length = 202

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 3/178 (1%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  I      P+   I   L   +    +      +     E        + 
Sbjct: 8   QQQVYDLIRDHINQTGMPPTRAEIAAQLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                 GG    G    G         E     +        D   +    SM  +    
Sbjct: 68  LMMEEEGGLPLIGRVAAGEPLLAEQHIEGHYQVDPALFRPGADFLLRVSGMSMKNIGIMD 127

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           GD+L ++    V  G  ++ +    ++  K L  + G  ++L+  N  +    V++  
Sbjct: 128 GDLLAVHKTEDVRNGQVVVARID-DEVTVKRL-KKNGNMVELLPENPEFQPIVVDLRQ 183


>gi|189424297|ref|YP_001951474.1| transcriptional repressor, LexA family [Geobacter lovleyi SZ]
 gi|189420556|gb|ACD94954.1| transcriptional repressor, LexA family [Geobacter lovleyi SZ]
          Length = 209

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 60/219 (27%), Gaps = 37/219 (16%)

Query: 6   HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            K++ + I    + +    +   +AR   +   +    K  G   R  +   ES+ +   
Sbjct: 16  QKQVLQFITSYTDDNGFPPSQREIARHLNVS-GTLPVMKHLGALERKGYIKRESVNR--- 71

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                        L  P + S      GV   G+    +   + 
Sbjct: 72  --------------------------GIALVRPANRSVSLPVVGVVRAGHLAPAIEDIQG 105

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               + +          +    SM+      GD+ ++         D ++     G++  
Sbjct: 106 HFAVDPMAVKGDDCFFLRVSGDSMINAGILDGDLAMVRPQQTAGNKDTVVAMID-GEVTL 164

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219
           K     R   I L   N       +   D  +  + +++
Sbjct: 165 KWFYRERD-HIRLQPANPNMEPIIIRPEDGELSIVGKVI 202


>gi|154249478|ref|YP_001410303.1| SOS-response transcriptional repressor, LexA [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153414|gb|ABS60646.1| SOS-response transcriptional repressor, LexA [Fervidobacterium
           nodosum Rt17-B1]
          Length = 198

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 51/222 (22%), Gaps = 34/222 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   + ++  I++ I          PS                 R         P    +
Sbjct: 1   MRELTERQKLIYDFIKDYMIMKGYAPS----------------IRDISRHFKMTPRGAQL 44

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             I         +                 +       P          +         +
Sbjct: 45  HLIA-------LEKKGYIKRGKGPRTISLLDRKESIVVPVKGKIAAGQAIEMFEQIDEEI 97

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            VP       G Y         K Q  SM+      GD +++           +      
Sbjct: 98  EVPLAMLKGYGEY------FALKVQGDSMINAHILDGDYVVIKRQYSAENNSIV-AAVVE 150

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             I  K L+  +   I+L+  N  Y     E   +  I +++
Sbjct: 151 DKITLKRLV-LKDDHIELIPENDAYQPIVCEPKKVRIIGKMV 191


>gi|94495894|ref|ZP_01302473.1| putative phage repressor [Sphingomonas sp. SKA58]
 gi|94424586|gb|EAT09608.1| putative phage repressor [Sphingomonas sp. SKA58]
          Length = 222

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 16/225 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               +     +DR+        + L+R  G +     +  +    G  R    +    + 
Sbjct: 1   MDQSQDARATLDRLIADRGDNYADLSRLIGRNAAYIQQFIKR---GTPRKLDEDDRRVLA 57

Query: 63  AATNETICQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                +   L  +  +               +P L    S  GG  D      G     +
Sbjct: 58  RYFGVSEDMLGGVASAAPAPVRGRGLPAVVSVPRLALGASAGGGTLDDDERTAG----VM 113

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRT 177
                   H G+     + +  +    SM P    GD ++++     +   D + +    
Sbjct: 114 AFDARWLRHLGV--RPQRVSIIRVDGESMAPTLSDGDDIMVDHDDDADRLRDGVYVLRLD 171

Query: 178 GDIVAKVLISRR-GRSIDLMSLNCCYPVDT-VEMSDIEWIARILW 220
           G ++ K +          ++S N  YP  T ++ + ++ + R++W
Sbjct: 172 GVLMVKRIAMGPLRGRFSVLSDNAHYPDWTDIDPTLVDIVGRVVW 216


>gi|330971222|gb|EGH71288.1| LexA repressor [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 202

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 65/215 (30%), Gaps = 34/215 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 45  --KHIVALTEAGLIEVVPHQARGIRLLNTEPRPELLEIPVLGRV-----AAGVPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 98  IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNSQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G++  K L  R  + + L+  N  Y    V   
Sbjct: 154 D-GEVTIKRLQRRADQ-VRLLPRNPAYEPIIVTPD 186


>gi|331008501|gb|EGH88557.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 202

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFSSRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 45  --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLELPVLGRV-----AAGAPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 98  IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L     + + L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 187


>gi|322435099|ref|YP_004217311.1| transcriptional repressor, LexA family [Acidobacterium sp.
           MP5ACTX9]
 gi|321162826|gb|ADW68531.1| transcriptional repressor, LexA family [Acidobacterium sp.
           MP5ACTX9]
          Length = 201

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 57/220 (25%), Gaps = 32/220 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           +   K++ + +     ++  +PS   +A   GL+                   S  ++ K
Sbjct: 4   TRRQKEVIDFLSGFTTKNGYSPSYEEIASGLGLN-------------------SLATVHK 44

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +           +           +  ++        G       G    G     +  
Sbjct: 45  HITNLQ-------NKGLLQRAHNRSRSIDVLPARTSKKGFERLPLLGRIAAGQPVEAIET 97

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E  S   G      +    + +  SM       GD +++        G+ ++      D
Sbjct: 98  AESIS--LGDIIGNREVFALEVRGDSMRDEHIVSGDYVLVERTRTAREGEIVVALIDGAD 155

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         I L   N          +++    ++L
Sbjct: 156 ATLKRFYREGA-MIRLQPSNKEMAPIYAPAANVSIQGKVL 194


>gi|297518180|ref|ZP_06936566.1| LexA repressor [Escherichia coli OP50]
          Length = 192

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|291282703|ref|YP_003499521.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Escherichia coli O55:H7 str. CB9615]
 gi|290762576|gb|ADD56537.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Escherichia coli O55:H7 str. CB9615]
          Length = 238

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 67/226 (29%), Gaps = 19/226 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I E I    +   LT   +A+  G+   S  K +    +     P  E++  +    +
Sbjct: 17  NTISERIRNRRKDVGLTQEQVAKAIGITRVSVTKWENGSSK-----PDGENLHLLSKLLS 71

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++   +L       +    +  +   +    +                     +P I++ 
Sbjct: 72  KSPEWILYGKDDHDKIDVLRLNQHLYISDNIARLPVLTWEQAGYWDMSCPVTEIPGIKNW 131

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRL-LIKPRT 177
            + +            +  SM     LP    G  +++           G  + +    T
Sbjct: 132 VDVMTKTAENSFLLHVEGDSMTNSNGLPTIPDGSTVLITPCSSNIRELVGKIILIQLEGT 191

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            ++  K +       I L+SLN  Y    + +       ++   SQ
Sbjct: 192 PNVTLKKVAIDGPN-IYLLSLNPLYKPIELNVG-YTIKGKV---SQ 232


>gi|77461218|ref|YP_350725.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
 gi|77385221|gb|ABA76734.1| putative regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 246

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 66/227 (29%), Gaps = 21/227 (9%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR-----------NRWPSTESIFKI 61
             + E  N+T +G A+  G +  + +    R     R           ++W  T    K 
Sbjct: 11  KALLEAANITTTGFAKFWGTEAQNVHNWYTRGVPAYRMEEVARLLSVNSQWLKTGEGPKD 70

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +     +LD     G  T  +  +I L  +                 +   T+ +P
Sbjct: 71  APHLHTESGDILDAHAIRGVYTVLETNDIELPLYKE-TPVAPGSDKTHVIKDPEQTIRLP 129

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                   I    T          SM      G  L ++  +       +      G + 
Sbjct: 130 RSHLETLEIRY--TDAICTHMIGNSMAEKIEDGSTLAIDRGLTQVVDGEIYAIEHDGMLR 187

Query: 182 AKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIE-----WIARILWAS 222
            K L    G ++ L S N   YP +    S IE      +  + W S
Sbjct: 188 IKYLHRMPGNALRLRSHNSAEYPDEIFRASQIEEQRIHVLGWVFWWS 234


>gi|109900545|ref|YP_663800.1| SOS-response transcriptional repressor, LexA [Pseudoalteromonas
           atlantica T6c]
 gi|122971422|sp|Q15MZ2|LEXA_PSEA6 RecName: Full=LexA repressor
 gi|109702826|gb|ABG42746.1| SOS-response transcriptional repressor, LexA [Pseudoalteromonas
           atlantica T6c]
          Length = 207

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 33/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I        + P  + +AR  G        +    ++   R  + E
Sbjct: 1   MRPLTPRQEEVLQLIKTTMLETGMPPTRAEIARHLGFKSA---NAAEEHLKALARKGAIE 57

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +                           +   +           G    G    G    
Sbjct: 58  IL-----------------------PGTSRGIRLTEPLEDQLEDQGLPLIGRVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E+    +      + D   +    SM  +    GD+L ++    V+ G  ++ + 
Sbjct: 95  AQEHVEMHYKVDPSLFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTTDVHNGQVVVARV 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + GR + L + N  +    V+++
Sbjct: 155 D-EDVTVKRLERK-GRQVVLHAENEDFQPIKVDLA 187


>gi|257093704|ref|YP_003167345.1| LexA repressor [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046228|gb|ACV35416.1| SOS-response transcriptional repressor, LexA [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 200

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 5/177 (2%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  +E R   P+   I       +    +      +       +      + 
Sbjct: 8   QQEILDFIRNTLEFRGAPPTRAEIASAFGFASHNAAEEHLKALARKGIILLEPGSARGIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G+    V   + R   +        D   + +  SM+      
Sbjct: 68  LVE--QLGLPLIGSVAAGSPILAVENVQRRYALDSSLFRPRADFLLRVRGLSMINAGILD 125

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD+L ++ + +   G  ++ +    ++  K    +    ++L++ N  +    V+ S
Sbjct: 126 GDLLAVHHSSEARNGQIVVARLD-DEVTVKRF-RQHNGIVELIAENPDFEPIVVDTS 180


>gi|168821320|ref|ZP_02833320.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342098|gb|EDZ28862.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088645|emb|CBY98403.1| LexA repressor [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 202

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  VQQHIEGHYQVDPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFTPIVVDLRE 183


>gi|258543098|ref|YP_003188531.1| phage transcriptional regulator and peptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634176|dbj|BAI00152.1| phage transcriptional regulator and peptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637236|dbj|BAI03205.1| phage transcriptional regulator and peptidase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640288|dbj|BAI06250.1| phage transcriptional regulator and peptidase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643345|dbj|BAI09300.1| phage transcriptional regulator and peptidase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646400|dbj|BAI12348.1| phage transcriptional regulator and peptidase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649453|dbj|BAI15394.1| phage transcriptional regulator and peptidase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652439|dbj|BAI18373.1| phage transcriptional regulator and peptidase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655497|dbj|BAI21424.1| phage transcriptional regulator and peptidase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 249

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 31/238 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +  R   T    A   G +    +   R       R      + K +        
Sbjct: 8   QRLKTLRNRAGYTVREFAEALGYEDKYSSY--RTYETTYKREFLPIPMVKAMVPLLVDRG 65

Query: 71  QLLDLPFSDGR--------------------------TTEKKEKEIPLLYFPPSGSGGFF 104
           +    P                                 +   +       P +G+G + 
Sbjct: 66  EPPITPNEVWGLAGVSAGEDGLTATVERAEEANCSRKPQKGSVRIREFDISPQAGAGAYI 125

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
           D       +          ++               +    SM P    GD +++++  +
Sbjct: 126 DEHCGLAESHVVLGAWEIPKNYIESYLPNSESLAIVRVVGNSMEPELNAGDRVLVDTDHK 185

Query: 165 VNCGDRLLIKPRTGDIVAKVLI---SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   D + +      IV K L          + ++S+N  YP D   +S+I    R++
Sbjct: 186 IPTPDGMYVIWNGLGIVIKQLQVIPRSNPPRVRIISVNPTYPADEALLSEIVVNGRVV 243


>gi|221066455|ref|ZP_03542560.1| SOS-response transcriptional repressor, LexA [Comamonas
           testosteroni KF-1]
 gi|220711478|gb|EED66846.1| SOS-response transcriptional repressor, LexA [Comamonas
           testosteroni KF-1]
          Length = 223

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 18/215 (8%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +   ++I + I     R    P  + +A   G              E   +  + + 
Sbjct: 4   PKLTPRQQQILDLIQSTIARTGAPPTRAEIASTFGFKSA-------NAAEEHLQALARKG 56

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +++ T+  I    D   +              L             G    G+    
Sbjct: 57  VIDLVSGTSRGIRLRADTVRTINAARGASFA----LPLTALAPLVLPLVGRVAAGSPILA 112

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               +              D   K +  SM       GD+L + +  +   G  ++ +  
Sbjct: 113 QEHIDQSYSVEPSLFAAKPDYLLKVRGMSMRDAGIMDGDLLAVQATHEARNGQIVVAR-L 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             D+  K       + I+L+  N  Y +  V+  +
Sbjct: 172 GDDVTVKRFKR-TPQGIELLPENPDYKIIHVDPEE 205


>gi|167033743|ref|YP_001668974.1| LexA repressor [Pseudomonas putida GB-1]
 gi|166860231|gb|ABY98638.1| transcriptional repressor, LexA family [Pseudomonas putida GB-1]
          Length = 205

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + + K+  I+E I      H+  PS   +A + G    S  +                
Sbjct: 4   MDNLTPKRRAIFEFIRERIAEHSQPPSLADIATRFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K + A  +     +    + G    +  +   +L  P  G          P G   +
Sbjct: 48  ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILEIPVLGQVA----AGAPIGPDLD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
                  +   +     +T D   K +  SM+      GD++ +        G  ++ + 
Sbjct: 101 IHE----QLLLDPSMFRRTPDYLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  + G    L+  N  Y    V+   
Sbjct: 157 D-GEVTIKRLQRQGGN-YRLLPRNPAYAPIDVQPEQ 190


>gi|312867200|ref|ZP_07727410.1| peptidase S24-like protein [Streptococcus parasanguinis F0405]
 gi|311097329|gb|EFQ55563.1| peptidase S24-like protein [Streptococcus parasanguinis F0405]
          Length = 225

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 51/213 (23%), Gaps = 8/213 (3%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----NRWPSTESIFKILAATNET 68
           +        LT + +     +   +++  +    E       R     S+ +      ++
Sbjct: 7   LKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINKDS 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                 L     +    +     L       S   +                        
Sbjct: 67  ALYTYPLLTPPHQKKVDQLASQLLEQQQKVVSLTAYKVLSIELAAGLGHTFYDNETDYET 126

Query: 129 GIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +  +   D        SM PLY  G + ++        G  +      G    K +  
Sbjct: 127 VYFDQEIQHDFASWVSGDSMEPLYPNGSVALMKQTGFDYDG-AVYALIWNGKTYIKKVYR 185

Query: 188 RRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
                + L S+N  Y         + + +  ++
Sbjct: 186 -EAEGLRLESINPDYDDLFAPYEDEPKIVGIVV 217


>gi|259909947|ref|YP_002650303.1| LexA repressor [Erwinia pyrifoliae Ep1/96]
 gi|224965569|emb|CAX57101.1| LexA repressor [Erwinia pyrifoliae Ep1/96]
 gi|283480043|emb|CAY75959.1| regulator for SOS(LexA) regulon [Erwinia pyrifoliae DSM 12163]
 gi|310765542|gb|ADP10492.1| LexA repressor [Erwinia sp. Ejp617]
          Length = 202

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 3/178 (1%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  I      P+   I   L   +    +      +     E        + 
Sbjct: 8   QQQVYDLIRDHINQTGMPPTRAEIAAQLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G         E     +        D   +    SM  +    
Sbjct: 68  LMMEEEVGLPLIGRVAAGEPLLAEQHIEGHYQVDPGLFKPGADFLLRVSGMSMKNIGIMD 127

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           GD+L ++    V  G  ++ +    ++  K L  + G  ++L+  N  +    V++  
Sbjct: 128 GDLLAVHKTEDVRNGQVVVARID-DEVTVKRL-KKNGNMVELLPENPAFQPIVVDLRQ 183


>gi|94985466|ref|YP_604830.1| putative prophage repressor [Deinococcus geothermalis DSM 11300]
 gi|94555747|gb|ABF45661.1| LexA-like repressor [Deinococcus geothermalis DSM 11300]
          Length = 236

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 13/216 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            A++    +  L+    A   GL    +++ +R   E      +   +  +  A   T+ 
Sbjct: 16  RALEIRRLQLGLSQELAAEAGGLSQPYYSEIERGERELTT--LTHSKLLGLARALGWTLA 73

Query: 71  QLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPH 127
            L      D             P    P          G+   G    +      I   +
Sbjct: 74  DLEKATGVDLGVVKAWTLAGSSPQTLAPVPNIHRVPVIGLASAGAPVADEQDERIIGWEY 133

Query: 128 NGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVA 182
                 +      +    SM        R GD L ++   + +  G   ++      IV 
Sbjct: 134 PAADEYRPHMLCLQVDGESMDNGEADGLRDGDRLYVDTRDLTLQEGKVYVVHVHGNGIVV 193

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K    + G    L S N  +        +   I R+
Sbjct: 194 KR-ARQLGNDWWLFSDNANFSPT--RPDEATIIGRV 226


>gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
          Length = 354

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 10/162 (6%)

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I      +I  L +       T  KK K+   +               F   +    + 
Sbjct: 189 EIADELVPSIEDLRNEKLKKWETQYKKNKDYKNITCINKYGSVAAGIPSFACEDVEKLLY 248

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +P         ++             SM  LY  G+I+I+        GD ++     G+
Sbjct: 249 LP------QKYFSPAYDYFALTINGDSMNKLYEDGEIIIVRKQNYARNGDIIIACIL-GE 301

Query: 180 IVAKVLIS-RRGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218
              K     +     +L+    N  Y   +    +I  +  +
Sbjct: 302 ATCKEYYFNKDDDKNELIPHSTNPKYKPQSYSNDEIIILGIV 343



 Score = 37.8 bits (86), Expect = 0.97,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            + +  + + LT   LA++  +  ++ +  ++  +E     PS   +  +    N +
Sbjct: 8  NNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVE-----PSIFFLINLANEMNCS 60


>gi|156932314|ref|YP_001436230.1| LexA repressor [Cronobacter sakazakii ATCC BAA-894]
 gi|166224568|sp|A7MPP3|LEXA_ENTS8 RecName: Full=LexA repressor
 gi|156530568|gb|ABU75394.1| hypothetical protein ESA_00089 [Cronobacter sakazakii ATCC BAA-894]
          Length = 202

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEENGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPGLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G +++L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNTVELLPENSEFKPIVVDLRE 183


>gi|295395418|ref|ZP_06805617.1| repressor LexA [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971740|gb|EFG47616.1| repressor LexA [Brevibacterium mcbrellneri ATCC 49030]
          Length = 294

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 33/221 (14%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGRNRWPSTESI 58
            +++ E I+     +   PS   + + AGL   S      N+ +R G     R P     
Sbjct: 92  QRQVLECIEHAVYTNGYPPSMREIGQAAGLASLSSVAHQLNQLERLGYV--RRDPKRPRA 149

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +++          +         T      +P++    +G             +  +  
Sbjct: 150 LEVVNPNEIEYNDKMT------PETSANTALVPVVGRIAAGGPIT------AEQHVEDVF 197

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P              +    +    SM+      GD +++      N G+ +      
Sbjct: 198 ALPRQVVGS-------GEMFLVQVVGDSMIDAAICDGDWVVVRKQSTANNGEIVAALLD- 249

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +   K L    G+   L+  N  Y     +      +  +
Sbjct: 250 NEATVKTLKREGGKQ-WLLPQNKDYEPI--DGDHALIMGLV 287


>gi|224079528|ref|XP_002335683.1| predicted protein [Populus trichocarpa]
 gi|222834533|gb|EEE73010.1| predicted protein [Populus trichocarpa]
          Length = 229

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 15/217 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M    + ++ E I    ER N  + S LAR  G+ P +         + +N    ++ + 
Sbjct: 1   MPE-QNPQLAERIRIAMERANTPSQSELARVVGVKPQAIQYLL----DPKNNATGSKHLV 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           KI  A   +   L          +     E                       N      
Sbjct: 56  KIAEALKVSAVWLATGQGEPTDVSAPSNIEPG-PDVRQGALYPLITWVQAGAWNGNCEAF 114

Query: 120 VPEIRS-PHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDRLLI 173
            P      +   + +  +    + +  SM        + +G +L +N       G  ++ 
Sbjct: 115 TPYQAEHWYMSPHNLGPRGYVLRVRGDSMTNRQGRYSFPEGMLLFVNPDKDPTPGQFVIA 174

Query: 174 KPR-TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           +     +   K           L ++N  +P   +EM
Sbjct: 175 RREADNEATFKRYTVI-DGKPYLEAINPDWPHKYLEM 210


>gi|47768|emb|CAA45123.1| LexA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|552020|gb|AAA27157.1| lexA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 202

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 64/216 (29%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++ +  V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKSEDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFTPIVVDLRE 183


>gi|156741061|ref|YP_001431190.1| SOS-response transcriptional repressor LexA [Roseiflexus
           castenholzii DSM 13941]
 gi|156232389|gb|ABU57172.1| SOS-response transcriptional repressor, LexA [Roseiflexus
           castenholzii DSM 13941]
          Length = 218

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 56/218 (25%), Gaps = 21/218 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I+   + H   PS   +     +  TS        +E +           ++ 
Sbjct: 11  QRDILAFIEAFTQEHGYPPSIREIQDGLHISSTSVVAYNLRALESKG----------LID 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   +             +   +PLL    +G                  + VP  
Sbjct: 61  RDGRVSRGIKLKNMLPVALNPARGGRVPLLGVITAGQPLPNPEDTSTA--AVEMIEVPPD 118

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI-LILNSAIQVNCGDRL-LIKPRTGDIV 181
            +P   +          K +  SM+      D  ++L        G  + +       + 
Sbjct: 119 VAPPEKL----QDVYALKVRGHSMIDALIDDDDIVLLRYQETAENGQMVAVRIEDDNAVT 174

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K      G  + L   N       V+ + +    R++
Sbjct: 175 LKRFYR-EGDKVRLQPANVTMEPIYVDATKVHIQGRVV 211


>gi|90021432|ref|YP_527259.1| LexA repressor [Saccharophagus degradans 2-40]
 gi|123396174|sp|Q21JT2|LEXA_SACD2 RecName: Full=LexA repressor
 gi|89951032|gb|ABD81047.1| SOS-response transcriptional repressor, LexA [Saccharophagus
           degradans 2-40]
          Length = 201

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 39/217 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I    E     P  + +A + G                R+   + E
Sbjct: 1   MYKLTTRQQEVLDLIKSHIEDTGYPPTRAEIANQLGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  +    +   P        + +    N  +
Sbjct: 46  HLKALARK----------GAIEMVPGASRGIRLPETIQGIPLIGRVAAGNPILAEQNIED 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              VP         +     +   K Q  SM       GD+L ++S  QV  GD ++ + 
Sbjct: 96  YCDVPPD-------FFYPQANYLLKVQGMSMRDAGILDGDLLAVHSTTQVKNGDIVVARI 148

Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSD 211
              ++  K     R   +I L+  N  + +  V++ D
Sbjct: 149 -EDEVTVKRFKRERNNATIQLLPENPDFNIIEVDLRD 184


>gi|332519788|ref|ZP_08396252.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332044347|gb|EGI80541.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 258

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 18/220 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  +     L+  GLA +  +  +     +          P+ E +          
Sbjct: 4   ISKNIKHLRNLKKLSQEGLAEELNVTRSRIGSYEENRS-----SPTIEFLIAFSDYFKIP 58

Query: 69  -----ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVP 121
                   L             +    P+     + +           G    ++     
Sbjct: 59  IDILLRNDLTKAKDFSFIELNNQRVLFPITVDDANENLIEVVPVKASAGYLAGYDDPEYI 118

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTG 178
           E        +    +      +  SMLP+ + G  +I   +    ++  G   ++     
Sbjct: 119 EQLQKIKLPFLPTGKHRAFPIKGDSMLPM-KDGSFVIGRFIEDRSEITTGKTYILVTAND 177

Query: 179 DIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            +V K +        S+ LMS N  Y   +V + ++  I 
Sbjct: 178 GMVYKRVFNNIDLNNSLLLMSDNKKYHDYSVPIEEVLEIW 217


>gi|302187803|ref|ZP_07264476.1| LexA repressor [Pseudomonas syringae pv. syringae 642]
          Length = 205

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 4   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 48  --KHIVALTEAGLIEVVPHQARGIRLLSSEPRPELLEIPVLGRV-----AAGAPIGPDLD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R  + + L+  N  Y    V    
Sbjct: 157 D-GEVTIKRLQRRADQ-VRLLPRNPAYEPIIVTPDQ 190


>gi|282890197|ref|ZP_06298727.1| hypothetical protein pah_c014o055 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499854|gb|EFB42143.1| hypothetical protein pah_c014o055 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 171

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +   +    +  +    +     K    SM+ +     DILI++ +++ + G  ++
Sbjct: 62  AEDHIE--KKLDLNELLIKHPSATFFLKVSGHSMIKVGIHHNDILIVDRSLEPSHGKIVI 119

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L    G+ I L++ N  YP   +   D   I  ++
Sbjct: 120 -ASLNGELTVKRL-RCEGKRIQLVAENDAYPPIEISSEDDFRIWGVV 164


>gi|13559843|ref|NP_112053.1| repressor protein cI [Enterobacteria phage HK620]
 gi|13517579|gb|AAK28868.1|AF335538_20 repressor protein cI [Salmonella phage HK620]
          Length = 238

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 23/231 (9%)

Query: 2   TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
            S + +++   + +  +     +   +T   +A + G+   +                + 
Sbjct: 5   KSLTTEQLEDAKRLKALYESKKKELGITQYSIADELGITQGAVGHYLNGRN-----ALNV 59

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E           +I        +      +  K    + +      G     +       
Sbjct: 60  EVASGFTRLLQVSIADFSQSIAAKVAEQAESLKSDANVRYAGEYRAGKRYPVLSSIQAGS 119

Query: 116 -----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVN 166
                    + +I         IQ      K +  SM         +G  ++ ++  +  
Sbjct: 120 WCEACEPYTIKDIDVWLESDAHIQGNAFWLKVEGDSMTAPVGLSIPEGTFVLFDTGREAI 179

Query: 167 CGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            G  ++     + +   K LI   G    L  LN  +P+  +  +  + I 
Sbjct: 180 NGSLVIAKLSDSNEATFKKLIIDGGNKY-LKGLNPAWPLVPINGN-CKIIG 228


>gi|78222651|ref|YP_384398.1| SOS-response transcriptional repressor, LexA [Geobacter
           metallireducens GS-15]
 gi|123729288|sp|Q39VQ1|LEXA_GEOMG RecName: Full=LexA repressor
 gi|78193906|gb|ABB31673.1| SOS-response transcriptional repressor, LexA [Geobacter
           metallireducens GS-15]
          Length = 201

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 133 IQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
           ++      + +  SM       GD+ ++         D ++     G+   K     RG+
Sbjct: 107 LKGGKFFLRVKGDSMVNAAILDGDLALIRPQPTAENNDIVVAMVD-GEATLKAFYRERGQ 165

Query: 192 SIDLMSLNCCYPVDTVE--MSDIEWIARIL 219
            I L   N       +     ++  + +++
Sbjct: 166 -IRLQPRNPNMEPIIIREGEGEVAIVGKVV 194


>gi|119505861|ref|ZP_01627926.1| LexA repressor [marine gamma proteobacterium HTCC2080]
 gi|119458289|gb|EAW39399.1| LexA repressor [marine gamma proteobacterium HTCC2080]
          Length = 199

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 60/213 (28%), Gaps = 33/213 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   +++ + I R  +     P+       L   S N ++    +   R  + E I
Sbjct: 1   MLKLTARQEQVLDVIKRCIDDTGYPPTRAEIARELSFKSANAAEEHL-KALARKGAIEMI 59

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                                             +    +   G    G    G+     
Sbjct: 60  AGASRG----------------------------IRLADTQPTGLAVVGRVAAGSPILAQ 91

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E R      +     D   +    SM+      GD+L ++S         ++ +   
Sbjct: 92  EHIEERCSIPSHFFSPRADYLLRVSGDSMINAGILDGDLLAVHSTPVAAEQQIVVARID- 150

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            ++  K L     + + L++ N  Y    V+++
Sbjct: 151 DEVTVKRLHRPNSQHVMLLAENEDYAPIKVDLA 183


>gi|91788814|ref|YP_549766.1| LexA repressor [Polaromonas sp. JS666]
 gi|123355548|sp|Q129C4|LEXA_POLSJ RecName: Full=LexA repressor
 gi|91698039|gb|ABE44868.1| SOS-response transcriptional repressor, LexA [Polaromonas sp.
           JS666]
          Length = 234

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 18/215 (8%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +   ++I E I     R    P  + +A + G        +    ++   R    E 
Sbjct: 15  PKLTARQQQILELIQSAITRTGAPPTRAEIANELGFKSA---NAAEEHLQALARKGVIEL 71

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +             L  +  S  +      + +  L  P          G    G+    
Sbjct: 72  VSGTSRGIRLRSDTLRSIHESRVKQFSLPLQSLAQLALPLV--------GRVAAGSPILA 123

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               E           +  D   K +  SM       GD+L +  A +   G  ++ +  
Sbjct: 124 QEHIEQTYYFESSLFQRQPDYLLKVRGMSMRDAGIIDGDLLAVKQAKEARNGQIVVARI- 182

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             ++  K    R    I+L+  N  +    VE  +
Sbjct: 183 GDEVTVKRF-RRTKHLIELLPENPDFKTIVVEPGE 216


>gi|331082050|ref|ZP_08331178.1| LexA repressor [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330405645|gb|EGG85175.1| LexA repressor [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 208

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 49/219 (22%), Gaps = 30/219 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +I E +          PS   +     L  TS   S              E++ K  
Sbjct: 9   KQSEILEYMKNEILNRGFPPSVREIGEAVHLKSTSSVHSH------------LETLEK-- 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                           D       E            +      G    G     V   +
Sbjct: 55  ----------NGYIRRDPTKPRAIEIVDDNFNLVRRETVNVPIIGKVSAGQPLLAVENID 104

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              P    Y    +      Q  SM+      GD +I+        G +++         
Sbjct: 105 GYFPIPSEYMPNNKTFMLVVQGDSMINAGIFNGDYVIVEQQQTAENGQKVVAL-VEDSAT 163

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            K         I L   N       VE     + + +++
Sbjct: 164 VKTFYK-EDGHIRLQPENDTMEPIIVEQDQFFQILGKVI 201


>gi|169634002|ref|YP_001707738.1| putative bacteriophage regulatory protein [Acinetobacter baumannii
           SDF]
 gi|169152794|emb|CAP01813.1| putative bacteriophage regulatory protein [Acinetobacter baumannii]
          Length = 249

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 66/242 (27%), Gaps = 29/242 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M +   ++   AI    +        + LA   G+   + +       +   +     + 
Sbjct: 1   MNTL-QERFNLAIKHYEQTSGKRFVKAHLADFCGVSRPAVSDWI----DKNVQTLEQSNA 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY-----------FPPSGSGGFFDSG 107
            K           L  L         ++ K   L              P S         
Sbjct: 56  EKAAKFLGVNHRWLNGLDSRMLEDISQESKNDSLYRPVMAWEAPDDLDPDSFMIIPHVDV 115

Query: 108 VFPTGNKW--NTVGVP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
            F  GN        VP      +     +                 SM P    G ++I+
Sbjct: 116 KFSAGNGRVAEFEPVPKRNGCAQPLEWFHKKRVSPKNLIEVDLDGDSMEPRIPSGSVVII 175

Query: 160 NSAI---QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           + +I   +     ++       ++  K L  R   ++ + S N  Y  + VE  D+E I 
Sbjct: 176 DKSINRLEQVQNRKVYAIRYGDELKIKRLSRRYDGALIIDSDNPSYEREIVEPQDLEHIG 235

Query: 217 RI 218
            I
Sbjct: 236 II 237


>gi|317152101|ref|YP_004120149.1| peptidase S24/S26A/S26B [Desulfovibrio aespoeensis Aspo-2]
 gi|316942352|gb|ADU61403.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 156

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 6/119 (5%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
           G      FP+    + +   +    +  +          +    SM       GDIL+++
Sbjct: 36  GEAVPAGFPSPA-EDYIE--KTLDLNEYLAPRPEATFFVRVAGDSMTGASIHHGDILVVD 92

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++  N G+ ++     G    K L       ++L   N  Y    +       I  ++
Sbjct: 93  RSVTPNPGNVVIACID-GGFTVKRLQR-TAGGLELAPENPDYAPTPITPDTDFEIWGVV 149


>gi|188588091|ref|YP_001921079.1| LexA repressor [Clostridium botulinum E3 str. Alaska E43]
 gi|251778209|ref|ZP_04821129.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188498372|gb|ACD51508.1| LexA repressor [Clostridium botulinum E3 str. Alaska E43]
 gi|243082524|gb|EES48414.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 201

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 36/219 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
             +I+E +    E     PS   +     L  TS      KR   +G  R   T+     
Sbjct: 8   QTEIYEFLKLYIENKGYPPSVREICEAVSLRSTSTVHGHLKRLEKKGLIRRDPTKPRA-- 65

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                  K  ++   +   P          +  T N  ++  +P
Sbjct: 66  -------------------LEIVKNNRDKKEMINIPIVGKITAGLPILATENIEDSFPIP 106

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                H+       +    +    SM+    R  D+ I+ S      GD ++      + 
Sbjct: 107 LDYIKHDN------ELFMLRVSGESMVNAGIRDNDLAIIESCQTALNGDIVVALID-EEA 159

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K     +   I L   N       V+   +  + +++
Sbjct: 160 TIKRFFKEKD-HIRLQPENDSMNPIIVDNCSV--LGKLV 195


>gi|88861104|ref|ZP_01135739.1| LexA repressor [Pseudoalteromonas tunicata D2]
 gi|88817032|gb|EAR26852.1| LexA repressor [Pseudoalteromonas tunicata D2]
          Length = 205

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 39/225 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I    +   + P  + +A   G                     + E
Sbjct: 1   MRPLTSRQAQILELIKVFIKDTGMPPTRAEIANTLGFKSA---------------NAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                          + + L+        G    G    G    
Sbjct: 46  HLKALAKK-------------GFIEMVPGASRGLKLVEEDEPEQLGLPLIGRVAAGEPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     + +      D   + Q  SM  +    GD+L ++ A     G  ++ + 
Sbjct: 93  AQEHIESHYHVDPLLFKPAADFLLRVQGMSMKDIGIMDGDLLAVHRATVARNGQVVVAR- 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
              D+  K    ++GR + L + N  +    V++S    DIE +A
Sbjct: 152 VGEDVTVKRF-EQKGRKVYLHAENDEFQPIIVDLSKESLDIEGLA 195


>gi|332525851|ref|ZP_08401992.1| LexA repressor [Rubrivivax benzoatilyticus JA2]
 gi|332109402|gb|EGJ10325.1| LexA repressor [Rubrivivax benzoatilyticus JA2]
          Length = 231

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 20/226 (8%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +   ++I + +    ER    P  + +A + G              E   +  + + 
Sbjct: 5   PKLTPRQQQILDLVQSAIERTGAPPTRAEIAAELGFRSA-------NAAEEHLQALARKG 57

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + +++  T+  I    D   +       +  +   L  P          G    G+    
Sbjct: 58  VIELVGNTSRGIRLKSDTLRALAEARLSQHGKQFSLPLPSLAQLTLPLVGRVAAGSPILA 117

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               +           +  D   K +  SM       GD+L +  A +   G  ++ +  
Sbjct: 118 QEHIDQSFVVEASLFQRKPDYLLKVRGMSMRDAGIMDGDLLAVQKAHEAKNGQIVVAR-L 176

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS------DIEWIA 216
             D+  K     +  +I+L+  N  +    V ++      ++E IA
Sbjct: 177 GDDVTVKRFRRTKA-AIELIPENPDFQTIVVPLAGSDQGFELEGIA 221


>gi|317493438|ref|ZP_07951859.1| LexA repressor [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918381|gb|EFV39719.1| LexA repressor [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 202

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I    E+  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVYDLIRDHIEQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +            E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALQRKGVIEIVSGASRGIRLLMEDETGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQEHIEGHYQVDPSLFKPNADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 -EDEVTVKRLKKQ-GNIVQLLPENSDFEPIVVDLRE 183


>gi|262369085|ref|ZP_06062414.1| merops peptidase family S24 [Acinetobacter johnsonii SH046]
 gi|262316763|gb|EEY97801.1| merops peptidase family S24 [Acinetobacter johnsonii SH046]
          Length = 230

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 62/230 (26%), Gaps = 17/230 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M++   +++  AI    +        + LAR A +   +          G  +      +
Sbjct: 1   MSTL-QERMSLAIKNFEKSTGKRFKNTDLARFAEVTRANVGLWIN----GPTKELEGSKL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL-YFPPSGSGGFFDSGVFPTGNK--W 115
            ++          L         +          L                   G+    
Sbjct: 56  LRVSEFMGVNPLWLAGERAPMLLSDPTSLDNNIDLSQKISLEGRPIPVISWVAAGSLSSI 115

Query: 116 NTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRL 171
            TV                 +     K    SM P +   D + +N  +Q      GD +
Sbjct: 116 ETVLRDTEIDEWLPPNKDCGKSGYGLKVTGMSMSPYFLPDDRIYVNPEVQTFDLQTGDLV 175

Query: 172 LIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
           +I      +   K LI        L  LN  +P   +++  D   + +++
Sbjct: 176 IIACYGETEATFKKLIIEGDNKY-LQPLNPNWPEQIIKLSEDCRLVGKVV 224


>gi|304317116|ref|YP_003852261.1| XRE family transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778618|gb|ADL69177.1| transcriptional regulator, XRE family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 268

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 67/256 (26%), Gaps = 57/256 (22%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ ER+N+T   +A    +   +  K          R P+ + I ++    + 
Sbjct: 11  NIGAVLRQLKERNNVTIHQIAEAVNVTDGAVAKYLSGE-----RKPNKQVIKRLAEFFHV 65

Query: 68  TIC-----------------------------------------QLLDLPFSDGRTTEKK 86
                                                        +  L  +     + K
Sbjct: 66  DQKVFAGTDDDIINIALEQYTSAVNQLNALKESIAEAPLNKVQEYINQLKEASNEVDKAK 125

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQ 143
           E    LL      +     +   P G                  Y + ++   D      
Sbjct: 126 EALHSLLQSSKPVTYVPVYANKIPAG-----YPNEVGTDDICDWYVVPSEIPADFAVNVT 180

Query: 144 DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM+      GDI+        + GD ++     G++  K  I ++     LM  N  Y
Sbjct: 181 GDSMINAGIDDGDIVFATINTTADYGDIIIAVSENGEVTIKYFI-QKDNQYFLMPANPDY 239

Query: 203 PVDTVEMSDIEWIARI 218
                  +D   +  +
Sbjct: 240 KPIPFT-NDFRIVGIV 254


>gi|110632572|ref|YP_672780.1| putative prophage repressor [Mesorhizobium sp. BNC1]
 gi|110283556|gb|ABG61615.1| putative prophage repressor [Chelativorans sp. BNC1]
          Length = 218

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 28/219 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + +K+ EAI         T + L+R+ G D             GR R    E + K
Sbjct: 1   MPKLTPEKLAEAIR----DAGFTAARLSREIGRDKDYVRDYL----IGRKRSLKAEDLEK 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I       + +   L        E    E+P++    +G+               +   +
Sbjct: 53  IAEKLGGDLNEPSTLKEV---ALENDLSEMPVIGTIRAGAWIETYML-----EHDDQGTI 104

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL----NSAIQVNCGDRL-LIKP 175
           P  +        +  +         SM      G  ++     +S + +  G  + +   
Sbjct: 105 PVAKDRR----FLHAKQYALAVAGDSMDLEAPDGSFVVCVDFGDSGLTLKPGMLVHVEAM 160

Query: 176 RTG--DIVAKVLISRRGRSI-DLMSLNCCYPVDTVEMSD 211
             G  +   K +    G+++    S N  Y    +   +
Sbjct: 161 EHGKSETTLKKVSFENGKTVLHPRSSNPIYKPLILGGDE 199


>gi|325287684|ref|YP_004263474.1| helix-turn-helix domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324323138|gb|ADY30603.1| helix-turn-helix domain protein [Cellulophaga lytica DSM 7489]
          Length = 251

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 59/211 (27%), Gaps = 16/211 (7%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
                 T +  A+  G+  T+    +R   +      S + + ++L         L    
Sbjct: 16  RRDLGFTQAEFAKLLGISSTT-ADIERGRTK-----LSGKVVTELLKQFKINPLWLFGEG 69

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-- 134
                +          +    +                +               + +   
Sbjct: 70  NQKYLSATANSVIPKFV-TVDAEDNENMVLVNAKAAAGYPQNIQDASWYKQLPAFDLPIP 128

Query: 135 ----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGDIVAKVLISR 188
                     + +  SMLP    G+ ++  +   +N    +++ +      ++ K +   
Sbjct: 129 EFRNATYRGFQVEGDSMLPNLYPGEWVLAKATESLNDISANKMYVVVLYDAVLVKKIEKV 188

Query: 189 RGRSID-LMSLNCCYPVDTVEMSDIEWIARI 218
              +   L+SLN  YP   V    I+ + ++
Sbjct: 189 PNSNFVSLISLNETYPPYQVAADQIQELWQV 219


>gi|291522345|emb|CBK80638.1| SOS-response transcriptional repressor, LexA [Coprococcus catus
           GD/7]
          Length = 205

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 55/221 (24%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
             ++I E I          PS   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQQEILEYIKSQLLAKGYPPSVREICEAVHLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +IL        + +                       P          +    N      
Sbjct: 69  EILDDEFNLARREMVN--------------------IPIVGTVTAGEPILAVENITGYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           VP    P+        +      +  SM+      GD +I+      + GD ++      
Sbjct: 109 VPSELMPN-------AELFMLAVRGESMINAGILDGDHVIVQQQSSADNGDMVVALVD-D 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N  +    V+    E + +++
Sbjct: 161 SATVKTFYKEED-HYRLQPQNDAFSPIIVKH--CEILGKVI 198


>gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC
           25986]
 gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC
           25986]
          Length = 208

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 62/214 (28%), Gaps = 24/214 (11%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + R+     LT + LA K G+   +    +      + R    + +  +   T   +  
Sbjct: 8   RLKRIRLDSGLTQAELADKLGITNRAVGAWESGRS--KPRLDKMKELAVLFDTTVADLMG 65

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                               ++        G F+      GN  + V VP   +  +   
Sbjct: 66  E-------DAAEAAISGTSRMVPLLGFAHMGDFED----EGNLADEVEVPASIADAHP-- 112

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
               +      Q   M   +    +L+++  ++   G  +L +      V +        
Sbjct: 113 ----RGFMVHAQGGCMDNRFPHDALLLVDPDMEPLNGQPVLAETADYGAVVRNYTR-GRS 167

Query: 192 SIDLM--SLNCCYPVDTVEMSD--IEWIARILWA 221
           ++ L   S +  Y        D  +    R++W 
Sbjct: 168 TVMLTADSHSGEYDDILAGPGDEPVVCRGRVVWY 201


>gi|288576456|ref|ZP_05978830.2| putative repressor protein [Neisseria mucosa ATCC 25996]
 gi|288565446|gb|EFC87006.1| putative repressor protein [Neisseria mucosa ATCC 25996]
          Length = 237

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 33/224 (14%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           T   +A K  +     NK        ++  P  E++ KI   T   +  LL         
Sbjct: 15  TLEEIASKIDMSYMGLNKVF-----AKDGLPKAETLIKIQDVTGCDLNWLLTGKGVPYLD 69

Query: 83  TEKKEKEIPLLYFPPSGS---------------GGFFDSGVFPTGNKWNTVGVPEIRSPH 127
             + E                                 S     G+         +    
Sbjct: 70  RARPENAGAFPVSDTGAGAVDTLGNPVDLREFVFIPRYSVEAAAGHGQTVSDEKPLFCMA 129

Query: 128 NGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              Y I+        + +    +  SM  +   GD +++N A      D L +     D+
Sbjct: 130 FRRYWIENYVTRQTDKLSVIAVKGDSMEGILNHGDNILINHAET-EPRDGLYVLRIGNDL 188

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILW 220
             K +       + + S N  Y    +++    +DI  I R+ W
Sbjct: 189 FVKNIQRLP-GRLLVKSANPLYEPFEIDLTADNTDIAIIGRVEW 231


>gi|302343271|ref|YP_003807800.1| LexA family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301639884|gb|ADK85206.1| transcriptional repressor, LexA family [Desulfarculus baarsii DSM
           2075]
          Length = 207

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 58/196 (29%), Gaps = 11/196 (5%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           L   +     RF  + +   P+ + + +I   +  +    ++     G    +  K   +
Sbjct: 12  LQRKTLEAICRFV-DAKGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGI 70

Query: 93  -----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
                     +        G+   G+          +           Q    +    SM
Sbjct: 71  AVARRPSEMAASLVSVPVVGMVAAGHPILAEENITGQVLVESDVVRSGQHFALRAVGDSM 130

Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           +      GD++I+        GD ++      +   K L   +   I+L+  N       
Sbjct: 131 IGAGINDGDLIIVRQQPIAEDGDIVVALLN-NEATVKRL-KIKDELIELVPENPEVRKIR 188

Query: 207 V-EMSDIEWIARIL-W 220
           +    D+  + +++ W
Sbjct: 189 IRPEDDLRVLGKVVGW 204


>gi|269137588|ref|YP_003294288.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidase) [Edwardsiella tarda EIB202]
 gi|267983248|gb|ACY83077.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidase) [Edwardsiella tarda EIB202]
 gi|304557659|gb|ADM40323.1| SOS-response repressor and protease LexA [Edwardsiella tarda
           FL6-60]
          Length = 202

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I    E+  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQQVYDLIRDHIEQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +            E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALQRKGVIEIVSGASRGIRLLMEDETGLPLIGQVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGFYQVDPSLFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 -EDEVTVKRLKKQ-GNMVQLLPENSDFQPIVVDLRE 183


>gi|160915491|ref|ZP_02077702.1| hypothetical protein EUBDOL_01499 [Eubacterium dolichum DSM 3991]
 gi|158432611|gb|EDP10900.1| hypothetical protein EUBDOL_01499 [Eubacterium dolichum DSM 3991]
          Length = 236

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 70/223 (31%), Gaps = 23/223 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I + I        ++   L+         ++  + +    +G +R    + + KI     
Sbjct: 15  IGKQIKNARNLKGISLDTLSELINGEKTKSTLKRYE----DGSSR-IEMDMLEKICNQIG 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRS 125
                +++         E  +  +  +    +       S     G     +   P+   
Sbjct: 70  LNYVDVINN-----AKDELNKSGLVEIPIVYNDYFPLHYSTNLSAGTLEELLDSEPDAIV 124

Query: 126 PHNGIY-AIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIV 181
                Y  I+ +    K   TSM  +     I++   + SA+ +  G  ++     G   
Sbjct: 125 YVPIKYQMIKKKLHAFKVNGTSMNNIIADNSIVVAEDVQSALNLKDGQIVV-AWVNGLAT 183

Query: 182 AKVLISRRGRSIDLMSLNCC--YPVDTV--EMSDIEWIARILW 220
            K L    G  I LM  +    +    +  ++  +  I R++W
Sbjct: 184 VKRLY-VNGNQITLMPDSSDKSHQPIMINTDIDTVSIIGRVIW 225


>gi|330985358|gb|EGH83461.1| LexA repressor [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 202

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 45  --KHIMALTEAGLIEVVAHQARGIRLLHSEPRPELLELPVLGRV-----AAGAPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 98  IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L     + + L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 187


>gi|264678971|ref|YP_003278878.1| SOS-response transcriptional repressor, LexA [Comamonas
           testosteroni CNB-2]
 gi|262209484|gb|ACY33582.1| SOS-response transcriptional repressor, LexA [Comamonas
           testosteroni CNB-2]
          Length = 223

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 18/215 (8%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +   ++I + I     R    P  + +A   G              E   +  + + 
Sbjct: 4   PKLTPRQQQILDLIQSSIARTGAPPTRAEIASTFGFKSA-------NAAEEHLQALARKG 56

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +++ T+  I    D   +              L             G    G+    
Sbjct: 57  VIDLVSGTSRGIRLRADTVRNINAARGASFA----LPLTALAPLVLPLVGRVAAGSPILA 112

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               +              D   K +  SM       GD+L + +  +   G  ++ +  
Sbjct: 113 QEHIDQSYSVEPSLFAAKPDYLLKVRGMSMRDAGIMDGDLLAVQATHEARNGQIVVAR-L 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             D+  K       + I+L+  N  Y +  V+  +
Sbjct: 172 GDDVTVKRFKR-TPQGIELLPENPDYKIIHVDPEE 205


>gi|299530066|ref|ZP_07043493.1| LexA repressor [Comamonas testosteroni S44]
 gi|298722046|gb|EFI62976.1| LexA repressor [Comamonas testosteroni S44]
          Length = 223

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 18/215 (8%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +   ++I + I     R    P  + +A   G              E   +  + + 
Sbjct: 4   PKLTPRQQQILDLIQSSIARTGAPPTRAEIASTFGFKSA-------NAAEEHLQALARKG 56

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +++ T+  I    D   +              L             G    G+    
Sbjct: 57  VIDLVSGTSRGIRLRADTVRTINAARGASFA----LPLTALAPLVLPLVGRVAAGSPILA 112

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
               +              D   K +  SM       GD+L + +  +   G  ++ +  
Sbjct: 113 QEHIDQSYSVEPSLFAAKPDYLLKVRGMSMRDAGIMDGDLLAVQATHEARNGQIVVAR-L 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             D+  K       + I+L+  N  Y +  V+  +
Sbjct: 172 GDDVTVKRFKR-TPQGIELLPENPDYKIIHVDPEE 205


>gi|260583479|ref|ZP_05851227.1| repressor protein [Granulicatella elegans ATCC 700633]
 gi|260158105|gb|EEW93173.1| repressor protein [Granulicatella elegans ATCC 700633]
          Length = 227

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 61/222 (27%), Gaps = 21/222 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL-------- 62
             +  +  +   + S +A++  +   +++  +        +  +  ++  I         
Sbjct: 5   NRLKEIRTQQGYSQSFIAKQLEISRVAYHHWENGKTIPNQK--NLIALADIFNVEASYFE 62

Query: 63  -AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTV 118
              T  T    L            ++                        G     ++  
Sbjct: 63  SEYTIVTNYLQLHSNNQKKAEHYVEQLLHQQQSQKTLYPITVLAEVKLSAGLGKGIFDEY 122

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
               + SP       +  D     Q  SM P Y+ G++ ++ +      G  +       
Sbjct: 123 ETEIVYSPTEQ----RGYDIAAWIQGDSMSPAYQNGEVALIQANGFDYDG-AVYALTWNE 177

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
            +  K L         ++SLN  Y    +   +  + +  ++
Sbjct: 178 AVYIKKLYRDEQG-FRMVSLNPNYSEQFIPYEENPQVVGLVV 218


>gi|33861818|ref|NP_893379.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33640186|emb|CAE19721.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 207

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 8/189 (4%)

Query: 40  KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
              +  +      PS   + K +   +    Q       D      +E +   +      
Sbjct: 18  NWIKNYMRDFQHSPSIRQMMKAMGLKSPAPVQSRLRHLQDKGYISWQEGKARTMQIVDEI 77

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
             G    G    G    T    +     + I+  +           SM+      GD+++
Sbjct: 78  FEGVPIMGSVAAGGLIETFSDLQENLDVSEIFR-KKDVFALTVNGDSMIDACIADGDMVL 136

Query: 159 LNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +     +  +  G  +           K    R    I L + N  Y    + ++++ + 
Sbjct: 137 MEPIKDSFSLRNGTIVSALVPGLGTTLKYFFKR-NGKIYLEAANPAYDPIELNLNEVTFQ 195

Query: 216 ARI--LWAS 222
            ++  +W S
Sbjct: 196 GKLLAVWRS 204


>gi|283787278|ref|YP_003367143.1| LexA repressor [Citrobacter rodentium ICC168]
 gi|282950732|emb|CBG90408.1| LexA repressor [Citrobacter rodentium ICC168]
          Length = 202

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLHEEEDGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRE 183


>gi|163786935|ref|ZP_02181383.1| transcriptional regulator [Flavobacteriales bacterium ALC-1]
 gi|159878795|gb|EDP72851.1| transcriptional regulator [Flavobacteriales bacterium ALC-1]
          Length = 269

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 18/230 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG----RNRWPSTESIFKIL 62
           + I E I  +    +L     +++ G+  T+ +       +     +   P  + +  I+
Sbjct: 2   EGIDEKISAIINHFHLNNFSFSKRIGVTGTTVDSIVNGRPQADGSRKKTKPGYDVLNAII 61

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTG------NKW 115
              N     L        ++   K +    +         G  +    P        + +
Sbjct: 62  DTFNVNPDFLFSKSTIMLKSDVVKGQTYSGMPQVIAVNQTGDENVVYVPVKARAGYLDGY 121

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLL 172
                 E     N  +         + +  SM+  +  GD++    +     +  G   +
Sbjct: 122 GDPEYIETLPSFNMPHLTNGTYRCFEVKGNSMVRTFFDGDLVFGKYVEDLNDIKDGRIYV 181

Query: 173 IKPRTGDIVAKVLISR--RGRSIDLMSLNCC--YPVDTVEMSDIEWIARI 218
           I  +   IV K +I+R    R + L S N    YP  T+   DI  +  +
Sbjct: 182 IVSKNDGIVLKRVINRIAERRKLILKSDNKDGNYPTYTINAEDIVEVWYV 231


>gi|190150434|ref|YP_001968959.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303253317|ref|ZP_07339466.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307248131|ref|ZP_07530159.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307261590|ref|ZP_07543258.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307263779|ref|ZP_07545385.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|229487613|sp|B3GXZ4|LEXA_ACTP7 RecName: Full=LexA repressor
 gi|189915565|gb|ACE61817.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302647999|gb|EFL78206.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855308|gb|EFM87483.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306868713|gb|EFN00522.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306870900|gb|EFN02638.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 210

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 34/218 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I++ +    E   + P+   +AR+ G    +                + E   K LA
Sbjct: 10  QQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 53

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                ++           +   G    G    G     +   E 
Sbjct: 54  RKGYIEMLSGTSRGIRILVDNEE---------TAANDDGLPLIGKVAAGTPIMAIEHVES 104

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG       D   K    SM  +    GD+L ++       G  ++ +    ++  
Sbjct: 105 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVD-DEVTV 163

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       V+      +IE IA
Sbjct: 164 KRLEKK-GDLIYLHPENDELQPIVVDPRIEYIEIEGIA 200


>gi|83311166|ref|YP_421430.1| SOS-response transcriptional repressors [Magnetospirillum
           magneticum AMB-1]
 gi|82946007|dbj|BAE50871.1| SOS-response transcriptional repressors [Magnetospirillum
           magneticum AMB-1]
          Length = 156

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +      H  +          +    SM       GD+L+++ ++Q + GD ++     G
Sbjct: 48  LEGKLDLHELMVKRPAATFFCRADGDSMTGAGIHSGDLLVVDRSVQPHDGDIVVATLD-G 106

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +  K L  +     +L S N  YP  +V+  D   I  ++
Sbjct: 107 GLTVKTL-RKTEDGWELASANPDYPSFSVDPDDGVQIWGVV 146


>gi|32035520|ref|ZP_00135463.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208580|ref|YP_001053805.1| LexA repressor [Actinobacillus pleuropneumoniae L20]
 gi|165976534|ref|YP_001652127.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303250143|ref|ZP_07336345.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252746|ref|ZP_07534637.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307255005|ref|ZP_07536823.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257161|ref|ZP_07538933.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307259441|ref|ZP_07541166.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|166224549|sp|A3N1B4|LEXA_ACTP2 RecName: Full=LexA repressor
 gi|229487610|sp|B0BQ48|LEXA_ACTPJ RecName: Full=LexA repressor
 gi|126097372|gb|ABN74200.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|165876635|gb|ABY69683.1| probable LexA repressor [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|302651206|gb|EFL81360.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306859778|gb|EFM91800.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861878|gb|EFM93854.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306864323|gb|EFM96234.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306866377|gb|EFM98240.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 210

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 34/218 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I++ +    E   + P+   +AR+ G    +                + E   K LA
Sbjct: 10  QQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 53

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                ++           +   G    G    G     +   E 
Sbjct: 54  RKGYIEMLSGTSRGIRILVDNEE---------TAANDDGLPLIGKVAAGTPIMAIEHVES 104

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG       D   K    SM  +    GD+L ++       G  ++ +    ++  
Sbjct: 105 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVD-DEVTV 163

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       V+      +IE IA
Sbjct: 164 KRLEKK-GDLIYLHPENDELQPIIVDPRIEYIEIEGIA 200


>gi|325277522|ref|ZP_08143120.1| putative phage repressor [Pseudomonas sp. TJI-51]
 gi|324097349|gb|EGB95597.1| putative phage repressor [Pseudomonas sp. TJI-51]
          Length = 162

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 39/146 (26%), Gaps = 12/146 (8%)

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI----------RSPHNGIYAIQTQ 136
           + +                      G        PE+                 ++    
Sbjct: 12  QADHGRPGLVGDEVWIAHYDVRAAMGGGQIPHDYPEMFKDVRVSPSHLRELGVEFSEHHH 71

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                    SM P  R  D LI++ +I+   GD +        I  K L        +++
Sbjct: 72  LKMVTGWGQSMEPTIRHRDPLIVDVSIREFVGDGIYFFAWGDHIYIKRLQIADDDHFEMI 131

Query: 197 SLNCCYPVDTVEMSDIEWIARI--LW 220
           S N  +    +   +    AR+  +W
Sbjct: 132 SDNSRHKDRLIRREETYIQARVLLVW 157


>gi|239906994|ref|YP_002953735.1| hypothetical protein DMR_23580 [Desulfovibrio magneticus RS-1]
 gi|239796860|dbj|BAH75849.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 223

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 73/227 (32%), Gaps = 10/227 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + +  +  I         T + +A   G+  +S + +K+      + W  T     
Sbjct: 1   MKPDNFEDAYARIQAATRAK--TQTEIAAILGIKQSSISDAKKKNTIP-DGWLVTLYRMF 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L        QL  +    G   +   +       PPS    +  S   P    W    +
Sbjct: 58  FLEPDWILYGQLPAVRRESGAAADCVRETAVAYVAPPSRVTVYAMSPTDPQTQAWIREPL 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGD 179
             +          +      +  + SM P  R+G  + ++    ++  GD   +      
Sbjct: 118 ETLPLFEALR---RPNLLVVRMDNASMEPTVRRGAYVGIDCDDGRLRSGDIYALDIPGEG 174

Query: 180 IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD--IEWIARILWASQ 223
           +V K +      + ++L + N  +   T+ + +  +  I +  W  Q
Sbjct: 175 LVIKRIHRDLENQRLELGADNPLHKSITLPLENPGLTSIGKAAWVIQ 221


>gi|298486616|ref|ZP_07004674.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158831|gb|EFH99893.1| HTH-type transcriptional regulator prtR (Pyocin repressor protein)
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 255

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 72/260 (27%), Gaps = 49/260 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +     + +  + ++ N+ P+ LA + G+     N     G+ G+        + +
Sbjct: 1   MFMTTRHS-GDRLREILKKRNIGPTELAGQLGVSTQKLNNWFTRGVPGK-------DLVQ 52

Query: 61  ILAATNETICQLLDLPFSDGRT----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +       I  L                   +E  + +                T  + +
Sbjct: 53  VANRLGVFIDWLHSGEGPQTDPDSLRGSASMREATIDHDQAGMGATPIREWDDSTPLEDD 112

Query: 117 TVGVPE----IRSPHNGIYAIQ---------------------TQDTRHKTQDTSMLPLY 151
            V VP       +  +G +AI+                             + +SMLP+ 
Sbjct: 113 EVSVPFLREVELAAGSGRFAIEETETAQLRFGKRSLRNNGVQSENARCVVVRGSSMLPVL 172

Query: 152 RKGDILILNSAIQVNCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDT 206
           R G  + +N        D +          G +  K +       I L S N   Y  + 
Sbjct: 173 RDGATVGVNVGKNALS-DIVDGDLYAINHNGQLRVKQVYRLPSG-IRLRSFNREEYQDED 230

Query: 207 VEMSD-----IEWIARILWA 221
               +     +  +  + W 
Sbjct: 231 YTFQEMQDQHLTILGHVFWW 250


>gi|237750713|ref|ZP_04581193.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373803|gb|EEO24194.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 218

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 62/220 (28%), Gaps = 18/220 (8%)

Query: 2   TSFSHKKIWEAIDRMAERHNL-TPSGL--ARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           +  + +++ E I  +     L +P  +  A    + P +  + K             + +
Sbjct: 7   SPITCREVIERIKDILAIDGLLSPKDIDVAHALKISPNALAQRKFQNTIP------YQHV 60

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L   N +I Q               + +I  LY     +G   ++      +     
Sbjct: 61  LDFLHNKNISINQFFYGSDPIEVAKHSLKYKILKLYTANVSAGALCENTEVECKDII--- 117

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                     G Y    +    +    SM      G +  ++   +     ++       
Sbjct: 118 -FDTTMLKEMGFY----ECEVVRVCGDSMEGAIHHGSLCFIDVRYKDIKNGKIYAINTKD 172

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +  K         I L S+N  Y      + ++  I R+
Sbjct: 173 GVFVKQCY-HTPTHIILSSMNDIYLPIQYPLEEVNVIGRV 211


>gi|330811959|ref|YP_004356421.1| regulatory protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380067|gb|AEA71417.1| putative regulatory protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 209

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 46/198 (23%), Gaps = 15/198 (7%)

Query: 39  NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           N     GI    R  S  S+  +                    TT +  +   +      
Sbjct: 2   NNWFNRGIPPG-RIHSIASLLTVSPEWLAHGEGPQTPLGLGPGTTYEAAENDGVYSVVEP 60

Query: 99  GSGGFFDSGVFPTGNKWN---TVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPL 150
                      P            +P+        +        +          SM   
Sbjct: 61  TDIELPFYKEVPIAPGETKTHITEIPDQSIRLPRSHLESLEINPSDAICITMVGDSMAER 120

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEM 209
              G  L ++  +      ++      G +  K L    G  + L S N   YP +    
Sbjct: 121 IADGSTLAIDRGLTQIVDGQIYALEHDGMLRIKYLHRIPGNRLRLRSHNSTAYPDEVFSA 180

Query: 210 SDIE-----WIARILWAS 222
             I+      I  + W S
Sbjct: 181 EQIDAQHIHVIGWVFWWS 198


>gi|124267055|ref|YP_001021059.1| LexA repressor [Methylibium petroleiphilum PM1]
 gi|171769835|sp|A2SGY5|LEXA_METPP RecName: Full=LexA repressor
 gi|124259830|gb|ABM94824.1| SOS-response transcriptional repressor, LexA [Methylibium
           petroleiphilum PM1]
          Length = 225

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 61/220 (27%), Gaps = 16/220 (7%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              +   ++I + +    ER    P+     A L   S N ++    +   R    E + 
Sbjct: 5   PKLTARQQQILDLVQTSIERTGSPPTRAEIAAELGFRSANAAEEHL-QALARKGVIELVG 63

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                       L  L     +        +  L  P          G    G+      
Sbjct: 64  GTSRGIRLKSDTLRSLNQLRNKQFSLPLPSLSQLMLPLV--------GRVAAGSPILAQE 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             +           +  D   K +  SM       GD+L +  A +   G  ++ +    
Sbjct: 116 HIDQSYAIEASMFPRRPDYLLKVRGMSMRDAGILDGDLLAVQKAREAKNGQIVVAR-LGD 174

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216
           ++  K     R  +I+L+  N  +    V     + E   
Sbjct: 175 EVTVKRFRRVR-GTIELLPENPDFEPIVVTPESGEFEIEG 213


>gi|302186533|ref|ZP_07263206.1| peptidase [Pseudomonas syringae pv. syringae 642]
          Length = 175

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 10/170 (5%)

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + KI  A       L D            E     +   P+    +        G     
Sbjct: 1   MAKIADACGVNALWLSDGKGDMTAVITSNEPSNVSMAEQPTRMYRYPLVSWVAAGEWSEA 60

Query: 118 VG--VPEIRSPHNGI-YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDR 170
           V    P     ++   Y  +      + +  SM     P   +G  +++++   V  G  
Sbjct: 61  VEPYAPGAADDYDVSDYKAKGPAFWLEVKGDSMTAPTAPSIPEGSQILVDTRADVRPGKL 120

Query: 171 LL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++     + +   K L+   G    L  LN  YP       D + I  ++
Sbjct: 121 VIAKLAGSNEATFKKLVEDGGVRY-LKPLNPAYPTVQCS-DDCKIIGVVV 168


>gi|299137353|ref|ZP_07030535.1| transcriptional repressor, LexA family [Acidobacterium sp.
           MP5ACTX8]
 gi|298600758|gb|EFI56914.1| transcriptional repressor, LexA family [Acidobacterium sp.
           MP5ACTX8]
          Length = 201

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 58/220 (26%), Gaps = 32/220 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           +   K++ + +     R+  +PS   +A   GL+                   S  ++ K
Sbjct: 4   TRRQKEVIDFLSSFTTRNGYSPSYEEIASGLGLN-------------------SLATVHK 44

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +           +           +  ++        G       G    G     +  
Sbjct: 45  HVTNLQ-------NKGLLQRAHNRSRSIDVLPQRSAKKGFDRLPLLGRIAAGKPVEAIET 97

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E  S   G      +    + +  SM       GD +++        G+ ++      D
Sbjct: 98  AESIS--LGDIIGNREVYALEVRGDSMRDEHIVSGDYVLVERTRTAREGEIIVALIDGAD 155

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K      G  I L   N          S++    ++L
Sbjct: 156 ATLKRFYR-EGNLIRLQPSNTEMAPIYAPASNVSIQGKVL 194


>gi|289165190|ref|YP_003455328.1| phage repressor [Legionella longbeachae NSW150]
 gi|288858363|emb|CBJ12231.1| phage repressor [Legionella longbeachae NSW150]
          Length = 223

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 14/218 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KI + I        LT   L      L  T  +  +R       R P  E I ++  A 
Sbjct: 5   DKIGQRIKEERVARGLTLKTLEELTDDLKQTRISNWERGY-----RTPGPEEIKQLAQAL 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + +   L+ L        ++    +  L                        V    + +
Sbjct: 60  DVSPAYLMCLTDEKQPKKKQGLNALIPLLNFQQACEAKLFIQRLKNNQNEQEVRYIPVTA 119

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
             N    ++      K  D SM P  R  DILI+N   +++ G+ +        ++ +  
Sbjct: 120 EFNA--KLEEYSFALKMNDESMHPELRLNDILIINPIAKLHPGNLV-AVQLEDQVIIRRY 176

Query: 186 I----SRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
                S+   S +L + N  +    ++  S+   I  +
Sbjct: 177 KQLTFSKNNNSFELKAENDHWGNIIIDKTSNYSIIGTV 214


>gi|319406695|emb|CBI80331.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 200

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 36/217 (16%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I   +  +     L+   LA +  +   + ++    G E   R    ++I ++  +  
Sbjct: 3   KNIIATLQILQSEFGLSQKDLANRLDVTQATVSRWL--GSESDPRGSHRDAILELYKSLK 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                                  +P++ +  +G     D    P  +    V +P     
Sbjct: 61  GYNQ---------------ITTLVPVMGYVGAGLEIDTDVEQIP-EDGLEKVEIP----- 99

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNC--GDRLLIKPRTGDIVA 182
               + +  +      + TSM P+Y+ GD++++       V+   GD +++         
Sbjct: 100 ----FDLPFEAIGFMVRGTSMYPVYKDGDLIVVKHLQTKPVSDYYGDEVVVLTEDNRRFI 155

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +       I L S N       ++   I+WI  I+
Sbjct: 156 KQITRSSEG-IVLKSWNAD----PIKNVKIKWIGEIV 187


>gi|187932361|ref|YP_001886007.1| LexA repressor [Clostridium botulinum B str. Eklund 17B]
 gi|187720514|gb|ACD21735.1| LexA repressor [Clostridium botulinum B str. Eklund 17B]
          Length = 201

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 36/219 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
             +I+E +    E     PS   +     L  TS      KR   +G  R   T+     
Sbjct: 8   QTEIYEFLKLYIENKGYPPSVREICEAVSLRSTSTVHGHLKRLEKKGLIRRDPTKPRA-- 65

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                  +  ++   +   P          +  T N  ++  +P
Sbjct: 66  -------------------LEIVRSNRDKKEMINIPIVGKITAGMPILATENIEDSFPIP 106

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                H+       +    +    SM+    R  D+ I+ S      GD ++      + 
Sbjct: 107 LDYIKHDN------ELFMLRVSGESMVNAGIRNNDLAIIESCQTALNGDIVVALID-EEA 159

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K     +   I L   N       V+   +  + +++
Sbjct: 160 TIKRFFKEKD-HIRLQPENDSMNPIIVDNCSV--LGKLV 195


>gi|26990769|ref|NP_746194.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985769|gb|AAN69658.1|AE016600_8 transcriptional regulator, Cro/CI family [Pseudomonas putida
           KT2440]
          Length = 234

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 16/202 (7%)

Query: 10  WEAIDR-MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           W A+ R   E   LT   LA + G+   S           + R P  ES+ +        
Sbjct: 20  WIALVRDRMEELGLTQEQLAERVGVSQGSVGHWVN-----KRRQPKIESMNRTFVELGMP 74

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRS 125
               + L         ++     +          +     +P    W+ +      E   
Sbjct: 75  HY-NVSLQLRIQGQVGEERSVYEIADDDELDLMRYIVCFRYPV-LGWSELEAATAVEPAV 132

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                Y  Q +      ++ +M  +      +G  ++++  ++   G  ++ +      +
Sbjct: 133 FEQTDYLAQGKAFWLTVENDAMSAVSGRSVPQGMRMLVDPGVEAEAGRLVIARQPGKPAI 192

Query: 182 AKVLISRRGRSIDLMSLNCCYP 203
            + L    G+   L +LN  YP
Sbjct: 193 FRELAEEGGQRY-LKALNSNYP 213


>gi|330808601|ref|YP_004353063.1| phage repressor [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376709|gb|AEA68059.1| putative phage repressor [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 218

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 65/214 (30%), Gaps = 15/214 (7%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +   +T   LA + G+               R R PS E + ++L        ++
Sbjct: 11  VKAKMKELRITQVVLAERLGMSQGGVGHWL-----TRRRQPSVEDMNRVLRELGLEFLEV 65

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
             +      +T++                  +           +     ++R      +A
Sbjct: 66  AMVIREPDTSTDEGLALAQKYNPYFRYPVSEWHEVGEVREG--DPGAYSQVRYELTDYHA 123

Query: 133 IQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLIS 187
           +            +M         +G  ++++ AI+   G  ++   P + D   + LI 
Sbjct: 124 L-GAAFWLVVVGDAMTAPSGLSIPEGMSILVDPAIEAVPGKLVVACLPGSSDATFRKLIE 182

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
             G+   L+ LN  Y    +       I  ++ A
Sbjct: 183 ESGQRY-LVPLNPTY-PKNLYTEQCRLIGVVVQA 214


>gi|301629308|ref|XP_002943785.1| PREDICTED: hypothetical protein LOC100486556 [Xenopus (Silurana)
           tropicalis]
          Length = 752

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 3/149 (2%)

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            T              G +  +       L  P          G    G+        + 
Sbjct: 588 CTPGAAATATASRRFCGPSGARAVAGRMALPIPGITQLVLPLVGRVAAGSPILAQEHVDQ 647

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                        D   K +  SM       GD+L + +  +   G  ++ +    D+  
Sbjct: 648 AYCVEDSLFQHKPDYLLKVRGMSMRDAGIMDGDLLAVQATREARNGQIIVAR-LGDDVTV 706

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L  R    I+L+  N  YPV TV+  +
Sbjct: 707 KRL-RRTATGIELLPENPDYPVITVQPGE 734


>gi|87198657|ref|YP_495914.1| putative phage repressor [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134338|gb|ABD25080.1| putative phage repressor [Novosphingobium aromaticivorans DSM
           12444]
          Length = 208

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 72/229 (31%), Gaps = 39/229 (17%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+ F        +  + + H +    LA+ AGL  TS     R   +         ++ +
Sbjct: 7   MSKFDIDAFRTRLQSLMDEHKIKRKPLAKAAGLGETSI----RDIFDSSRNDVRIGTLVR 62

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      ++ +L++ P    R   +      +L+       G              TV  
Sbjct: 63  LADYFQMSVDELIEEPE--MRLAGRVGAGGQVLFEAEDSHSGP-------------TVPK 107

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPR 176
           P   S               +   TSMLP Y  GDI+ +   +        G+   ++  
Sbjct: 108 PPGAS---------AAVMALEVVGTSMLPKYEDGDIVYVRRDVDGIPRSAIGEYCAVRTA 158

Query: 177 TGDIVAKVLIS-RRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWASQ 223
            G    K+L          L SLN            ++ W A +LW  Q
Sbjct: 159 EGGTYLKILAKGSEPGRFTLRSLNAPDMEN-----EEVVWAAPVLWVRQ 202


>gi|57237282|ref|YP_178295.1| transcriptional regulator, putative [Campylobacter jejuni RM1221]
 gi|57166086|gb|AAW34865.1| transcriptional regulator, putative [Campylobacter jejuni RM1221]
          Length = 210

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 64/211 (30%), Gaps = 16/211 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++ E+  LT   L  K  L        ++       ++   ++I K+         +  
Sbjct: 7   KQIREKLGLTQEQLGNKLNLTRQQIINIEKGKTPISKKYF--DNISKLSKKFYIDKEENA 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                + +           +     G         + TG                     
Sbjct: 65  LNKDRNKQEINFYSIPKLNISASAGGGNELIGLEEYETGEMLE--------LSKAFFKTT 116

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-GRS 192
                  K    SM+P+      +I     +   GD L I      ++ K+L      + 
Sbjct: 117 PKNVKAIKVDGYSMIPMLLPDSWVIFEEIHEYQ-GDGLYILNFDNQLMVKLLQLDPISKV 175

Query: 193 IDLMSLNCCYPVDTVEMSD--IEWI--ARIL 219
           +D++S+N  Y   ++++ D  +E I   ++L
Sbjct: 176 LDIISVNKDYKSYSLDLKDSQVEIIIQGKVL 206


>gi|291528304|emb|CBK93890.1| Predicted transcriptional regulator [Eubacterium rectale M104/1]
          Length = 243

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 27/232 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKA---GLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAA 64
            E +    ++   + S L       G+  T+   +K +    E       T  + ++L  
Sbjct: 5   GEILAENRKKKGYSQSDLVDLLSQEGIQVTTKAISKWETNAREPALHVFLT--LCQLLDI 62

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLY----------------FPPSGSGGFFDSGV 108
            +       + P++      ++ +   + +                  P           
Sbjct: 63  EDIYESFFGENPYNIMSGLNEEGRNKLIEFADILKASKKFSPLSAKIIPFHHPVEITWEP 122

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              G   N +      +   G  A +  D   +    SM PLY  GD+  +     +  G
Sbjct: 123 VSAGTG-NYLEDSVKETYDVGHLAPEQTDFGVRISGDSMEPLYHTGDVAWIQKKDSLANG 181

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWIARIL 219
           +  +     G+   K L       + L+SLN  Y     +E    +   +++
Sbjct: 182 EIGI-FYLNGNTYIKELHDEPDG-VYLISLNQKYRPIQVLESDSFKIFGKVI 231


>gi|71065042|ref|YP_263769.1| Cro/CI family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71038027|gb|AAZ18335.1| possible transcriptional regulator, Cro/CI family [Psychrobacter
           arcticus 273-4]
          Length = 224

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 11/207 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +    E  +L    LA   G    + +  +    +  +          I      +
Sbjct: 3   LGHRVKEAREFRSLKQGELAELIGWTQQALSTLENRDSKKSSYSAQISKALDIDIDWLIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               +     + ++ +K  K +P+      G  GF+    +        + V        
Sbjct: 63  GAGEMINTKKEAKSAKKLIKYVPVKGSAQMGDNGFWSELDYMGAGGDGYLEVNNASD--- 119

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                       +    SM P  R G  ++ + + +   G+ + I  + G  + K  +S 
Sbjct: 120 -------SAYVIRAVGDSMFPAIRSGWYIVFDPSREACSGEYVHIVLKDGRNMVKEYVSC 172

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   ++L+S+N      +    D++ +
Sbjct: 173 QHGIVNLISVN-GMERISFNCEDVDVL 198


>gi|320190197|gb|EFW64847.1| regulatory protein cI [Escherichia coli O157:H7 str. EC1212]
          Length = 215

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 65/210 (30%), Gaps = 17/210 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ-----LLDLPFSD 79
           + LA   G+D  + ++ +     G+ +  + +++  I  +    I               
Sbjct: 4   ADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGVDIADLFTSAHKSNTVYK 59

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136
               E   +   +             +G+   G+  + +   E R+ +            
Sbjct: 60  NSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +  SM P    GD++ ++ +I    GD + +      I  K L       + ++
Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178

Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223
           S N  Y    +            ++L  SQ
Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207


>gi|145632024|ref|ZP_01787771.1| putative phage repressor [Haemophilus influenzae R3021]
 gi|144982313|gb|EDJ89907.1| putative phage repressor [Haemophilus influenzae R3021]
          Length = 184

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 63/189 (33%), Gaps = 21/189 (11%)

Query: 37  SFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL-LDLPFSDGRTTEKKEKEIPLLYF 95
           + ++ +    +     P++E+I  +       I  L      S+         +IPL+ +
Sbjct: 2   AISQWESDTTK-----PNSENILDLSTVLQCDISWLLRGNGQSNVLPASIGGNKIPLISY 56

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
             +G      S     G+ ++ V              +            SM P +++ D
Sbjct: 57  IQAGKWSGISSLKESCGD-FDYVFTD---------LDVSENAFALSIIGDSMEPEFKEED 106

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-----IDLMSLNCCYPVDTVEMS 210
           ++I++  +Q   G+ ++      +   K               +L+ LN  YP  +    
Sbjct: 107 VIIIDPQVQPVAGEFVVAINGDYEATFKKYRPLEIDEYGRTQFELIPLNSDYPKMSSLKQ 166

Query: 211 DIEWIARIL 219
            I  I  ++
Sbjct: 167 QISIIGTMV 175


>gi|104779883|ref|YP_606381.1| transcriptional regulator [Pseudomonas entomophila L48]
 gi|95108870|emb|CAK13566.1| putative transcriptional regulator [Pseudomonas entomophila L48]
          Length = 232

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 64/225 (28%), Gaps = 17/225 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRNRWPSTESIFKILAATNET 68
            + +  + +  NLTPS  A +  + P   N   KR   + R      E I  +       
Sbjct: 5   GDRLKALLQECNLTPSDFAAQRKVTPQHVNNWLKRGVPQAR-----VEEIAGLFCVHPRW 59

Query: 69  IC--QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEI 123
           +   +    P         + +E P       G+         P  +    V     P  
Sbjct: 60  LRSGEGPKHPGPFTPPRPARPREEPPAPLLALGAERVPLPLFHPHESGLEAVPGLHQPIP 119

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           R   + +               +M P   +G +L ++ +               G +   
Sbjct: 120 REALDRVRVATQHAFCIGMPANNMAPYLPQGTLLAVDRSFTRVVEGECYALLHNGKLRVH 179

Query: 184 VLISRRGRSIDLMS---LN---CCYPVDTVEMSDIEWIARILWAS 222
            L   R  ++ L S   LN     Y         +E +  + W S
Sbjct: 180 QLTLGRHGTLCLHSHDRLNHPTERYTAYQRRAQHLEILGWVFWWS 224


>gi|303233230|ref|ZP_07319902.1| repressor LexA [Atopobium vaginae PB189-T1-4]
 gi|302480620|gb|EFL43708.1| repressor LexA [Atopobium vaginae PB189-T1-4]
          Length = 213

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 57/220 (25%), Gaps = 30/220 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFK 60
            ++I+E I   +  H   PS   +    GL  P++ +   R   E     R P       
Sbjct: 10  QQEIYEYICEYSAAHGYPPSVREIGAAVGLRSPSTVHTHLRVLQEFGYIKRDPKKPRALL 69

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +              P    ++  +           P          +    N    + V
Sbjct: 70  L-------------TPTVTHQSGTEAIVSAQGSIKLPVVGRVAAGVPILAAQNVEEYMQV 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P          A        + +  SM  +     D +++        G+ ++      +
Sbjct: 117 PSTI-------AGDKAAFILQVRGESMKNIGINNNDYIVVQQQDTARNGEIVIALID-NE 168

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K         + L   N       VE      + +++
Sbjct: 169 CTVKRFFKEE-HYVRLQPENDTMQPIFVENP--VILGKVI 205


>gi|317127867|ref|YP_004094149.1| LexA repressor [Bacillus cellulosilyticus DSM 2522]
 gi|315472815|gb|ADU29418.1| LexA repressor [Bacillus cellulosilyticus DSM 2522]
          Length = 808

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +    N   A             SM+     KGD +I+N     + GD ++      
Sbjct: 706 YESVIVLPNDWIASPNDTFALTVTGDSMIGAGIDKGDQVIVNRQNVASNGDIVIAII-EE 764

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K  +   G S+ L+S N  Y    ++  D+    +++
Sbjct: 765 EATMKKFM-LMGDSVLLISENSSYEPIQMKREDVLINGKVI 804


>gi|307308739|ref|ZP_07588435.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
           BL225C]
 gi|306900745|gb|EFN31356.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
           BL225C]
          Length = 272

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 33/232 (14%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           W+ +D   +      + LAR++G+   + NK  R  IE + R  + E++ + +      +
Sbjct: 42  WKRLDERRKELGWNKAELARRSGIPYDNINKYLRGEIE-QPRGDALETLARTIKRPLLWL 100

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              +++   +      +     L+    +G+            + ++      I  P + 
Sbjct: 101 RDGIEVEGGELVPAPGRLVAGALVGKAEAGTFREV--------DAFDQAEREVIAVPPDE 152

Query: 130 IYAIQTQDTRHKTQDTSMLP----LYRKGDILI------LNSAIQVNCGDRLLIKPRTG- 178
            +    +         SM          GD LI      +     +  G  ++++     
Sbjct: 153 RFP-NARILVFDVAGDSMNDLRPRPILDGDRLICVAYEDVAHEAVLRDGMVVVVERTRDG 211

Query: 179 ----DIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMS-------DIEWIARI 218
               +   K +   +GR+     S N  +    VE          +E +  +
Sbjct: 212 GQTREWSVKQVEIYQGRTEFHPRSTNPKHKPIVVERDVFADDGSQVEVVGLV 263


>gi|238925885|ref|YP_002939403.1| putative prophage repressor [Eubacterium rectale ATCC 33656]
 gi|238877562|gb|ACR77269.1| putative prophage repressor [Eubacterium rectale ATCC 33656]
          Length = 243

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 69/232 (29%), Gaps = 27/232 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKA---GLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAA 64
            E +    ++   + S L       G+  T+   +K +    E       T  + ++L  
Sbjct: 5   GEILAENRKKKGYSQSDLVNLLSQEGIQVTTKALSKWENNAREPALHVFLT--LCQLLDI 62

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLY----------------FPPSGSGGFFDSGV 108
            +       + P++      ++ +   + +                  P           
Sbjct: 63  EDIYESFFGENPYNIMSGLNEEGRNKLIEFADILKASKKFSPLSAKIIPFHHPVEITWEP 122

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              G   N +      +   G  A +  D   +    SM PLY   D+  +     +  G
Sbjct: 123 VSAGTG-NYLEDSVKETYDVGHLAPEQTDFGVRISGDSMEPLYHTDDVAWIQKKDSLANG 181

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWIARIL 219
           +  +     G+   K L       + L+SLN  Y     +E    +   +++
Sbjct: 182 EIGI-FYLNGNTYIKELHDEPDG-VYLISLNQKYRPIQVLESDSFKIFGKVI 231


>gi|319405045|emb|CBI78654.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 205

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 36/216 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++    NLT   +AR+  +   S +K  +   +   R  + ++I ++      
Sbjct: 6   NIISTLKKILTEFNLTQEDVARRLNVTQASVSKWLK---DSDPRGSNRDAILELYKELKG 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                                 +PL+ +  +G+         P  +    + +P      
Sbjct: 63  DNHLTTF---------------VPLMGYIGAGTQIDPSFEQIP-EDGLEQIEIP------ 100

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAK 183
              + +       + +  SMLP+Y+ GD++I        I+   G   +I         K
Sbjct: 101 ---FVLPDDMIAFEVKGDSMLPVYKNGDMVIARRRQIKTIEYFFGKEAVILTHDNKRYIK 157

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +       IDL+S N   P    + + I WI  I 
Sbjct: 158 QISRGMNGEIDLLSWNA--PPI--KNAKITWIGEIF 189


>gi|254416693|ref|ZP_05030443.1| LexA repressor [Microcoleus chthonoplastes PCC 7420]
 gi|196176433|gb|EDX71447.1| LexA repressor [Microcoleus chthonoplastes PCC 7420]
          Length = 201

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 55/191 (28%), Gaps = 8/191 (4%)

Query: 38  FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
                   I+     PS   + + +   +    Q       +    +  E +   +    
Sbjct: 11  LYNWLVDYIQTAQHAPSIRQMMRAMNLRSPAPIQSRLEHLRNKGYIDWTEGKARTIRILS 70

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDI 156
           S + G    G    G           R   +G++         +    SM   L R+GD+
Sbjct: 71  STASGVPVLGAIAAGGMVEPFTDGMDRIDLSGLFTQPGN-FALRVTGDSMIEALIREGDL 129

Query: 157 LILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           +I+    +      G  +  +        K    +    I L   N  YP   VE   +E
Sbjct: 130 VIMQPVPEPDQLKNGQIVAARVEGYGTTLKHFYRQED-RITLQPANSNYPPIEVETEKVE 188

Query: 214 WIARI--LWAS 222
               +  +W S
Sbjct: 189 VQGVLVGVWRS 199


>gi|260771651|ref|ZP_05880571.1| SOS-response repressor and protease LexA [Vibrio metschnikovii CIP
           69.14]
 gi|260613428|gb|EEX38627.1| SOS-response repressor and protease LexA [Vibrio metschnikovii CIP
           69.14]
          Length = 208

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 61/214 (28%), Gaps = 32/214 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++++E I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFELIKSKIEETGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  + +           G    G    G    
Sbjct: 46  HLKALARK----------QVIEIVPGASRGIRILVGAANDAEQDLGLPLIGRVAAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + Q  SM  +    GD+L ++    V  G  ++ + 
Sbjct: 96  AQEHIEAHYHVDPSMFRPQADFLLRVQGESMKDIGIMDGDLLAVHKTQDVRNGQVVVAR- 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  +    + L + N  +    V++
Sbjct: 155 VEEDVTVKRLERKGA-KVWLHAENDAFAPIEVDL 187


>gi|144897419|emb|CAM74283.1| SOS mutagenesis protein UmuD [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 192

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 8/150 (5%)

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGI 130
                +        +      F P+       S + P G      + +        H  +
Sbjct: 37  MFSRHENAPLPPGTRLASSRAFVPADGAAPIYSALVPAGFPSPADDHLE--GKLDLHELM 94

Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                     +    SM       GD+L+++ ++Q   GD ++     G +  K L  + 
Sbjct: 95  VKRPAATFFCRADGDSMTGAGIHSGDLLVVDRSVQPQDGDIVVATLD-GGLTVKTL-RKT 152

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +L   N  YP   +   D   I  ++
Sbjct: 153 TEGWELAPANPDYPSFPLNQEDGVQIWGVV 182


>gi|126665024|ref|ZP_01736007.1| LexA repressor [Marinobacter sp. ELB17]
 gi|126630394|gb|EBA01009.1| LexA repressor [Marinobacter sp. ELB17]
          Length = 202

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 3/159 (1%)

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
             E   ++   +     + L      G           +         G    G    G+
Sbjct: 27  RAEIAAELGFRSANAAEEHLRALARKGAIEMVPGASRGIRLPESEQDLGLPVIGQVAAGS 86

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                   E        +     D   + +  SM  +    GD+L ++S   V+ G  ++
Sbjct: 87  PILAQEHVEDHCTLKPGFFSPAADYLLRVRGMSMKNIGILDGDLLAVHSTQDVHNGQIVV 146

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            +    ++  K    + G  + L++ N  +    V++++
Sbjct: 147 AR-VGDEVTVKRF-RKEGNKVYLVAENDDFAPIEVDLTE 183


>gi|73749412|ref|YP_308651.1| LexA repressor [Dehalococcoides sp. CBDB1]
 gi|289433370|ref|YP_003463243.1| transcriptional repressor, LexA family [Dehalococcoides sp. GT]
 gi|73661128|emb|CAI83735.1| LexA repressor [Dehalococcoides sp. CBDB1]
 gi|288947090|gb|ADC74787.1| transcriptional repressor, LexA family [Dehalococcoides sp. GT]
          Length = 214

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 60/213 (28%), Gaps = 23/213 (10%)

Query: 11  EAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + I R   R+   PS   +     +  TS                + + + K        
Sbjct: 14  DFIARFRRRYGYPPSIRDIVSGCNISSTSVVDY------------NLKILQK------MG 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +              +E     +  P  G          P  + +  V   E      
Sbjct: 56  LIRRQAEISRGIELVGTEETNEGRISIPVIGQIAAGTPIPVPESDSFAVVTSDESIEVTE 115

Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLI 186
            +   +      + +  SM   L   GD++I+     V+ G+   +      ++  K + 
Sbjct: 116 DLTRGRGNIYALRVKGVSMIEDLINDGDLVIMQHTQTVDNGETAAVWLKDQKEVTLKRVY 175

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 + L   N   P    +  ++E   R++
Sbjct: 176 -MEPGRVRLQPANRTMPPIYTKPDNVEIQGRVI 207


>gi|120554924|ref|YP_959275.1| LexA repressor [Marinobacter aquaeolei VT8]
 gi|171769189|sp|A1U269|LEXA_MARAV RecName: Full=LexA repressor
 gi|120324773|gb|ABM19088.1| SOS-response transcriptional repressor, LexA [Marinobacter
           aquaeolei VT8]
          Length = 202

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 61/207 (29%), Gaps = 31/207 (14%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             ++ + I R  +     P+     A L   S N ++             E +  +    
Sbjct: 7   QSQVLDIIRRYVDETGYPPTRAEIAAELGFRSANAAE-------------EHLRALARK- 52

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                         G           +         G    G    G+        E   
Sbjct: 53  --------------GAIEMVPGASRGIRLPEAEEDLGLPVIGQVAAGSPILAQEHIEDHC 98

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +   + D   + +  SM  +    GD+L ++S   V+ G  ++ +    ++  K 
Sbjct: 99  TLQPGFFSPSADYLLRVRGMSMKDIGILDGDLLAVHSTQDVHNGQIVVAR-VGEEVTVKR 157

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD 211
              R G  + L++ N  +    V++++
Sbjct: 158 F-RREGNKVWLIAENEEFAPIEVDLAE 183


>gi|15804636|ref|NP_290677.1| LexA repressor [Escherichia coli O157:H7 EDL933]
 gi|15834280|ref|NP_313053.1| LexA repressor [Escherichia coli O157:H7 str. Sakai]
 gi|16131869|ref|NP_418467.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli str. K-12 substr. MG1655]
 gi|24115367|ref|NP_709877.1| LexA repressor [Shigella flexneri 2a str. 301]
 gi|26250826|ref|NP_756866.1| LexA repressor [Escherichia coli CFT073]
 gi|30064633|ref|NP_838804.1| LexA repressor [Shigella flexneri 2a str. 2457T]
 gi|74314537|ref|YP_312956.1| LexA repressor [Shigella sonnei Ss046]
 gi|82546388|ref|YP_410335.1| LexA repressor [Shigella boydii Sb227]
 gi|82779547|ref|YP_405896.1| LexA repressor [Shigella dysenteriae Sd197]
 gi|89110764|ref|AP_004544.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
           substr. W3110]
 gi|91213566|ref|YP_543552.1| LexA repressor [Escherichia coli UTI89]
 gi|110644380|ref|YP_672110.1| LexA repressor [Escherichia coli 536]
 gi|110807940|ref|YP_691460.1| LexA repressor [Shigella flexneri 5 str. 8401]
 gi|117626311|ref|YP_859634.1| LexA repressor [Escherichia coli APEC O1]
 gi|157156057|ref|YP_001465544.1| LexA repressor [Escherichia coli E24377A]
 gi|157163512|ref|YP_001460830.1| LexA repressor [Escherichia coli HS]
 gi|168750824|ref|ZP_02775846.1| LexA repressor [Escherichia coli O157:H7 str. EC4113]
 gi|168755195|ref|ZP_02780202.1| LexA repressor [Escherichia coli O157:H7 str. EC4401]
 gi|168760890|ref|ZP_02785897.1| LexA repressor [Escherichia coli O157:H7 str. EC4501]
 gi|168766285|ref|ZP_02791292.1| LexA repressor [Escherichia coli O157:H7 str. EC4486]
 gi|168774382|ref|ZP_02799389.1| LexA repressor [Escherichia coli O157:H7 str. EC4196]
 gi|168780437|ref|ZP_02805444.1| LexA repressor [Escherichia coli O157:H7 str. EC4076]
 gi|168784640|ref|ZP_02809647.1| LexA repressor [Escherichia coli O157:H7 str. EC869]
 gi|168798312|ref|ZP_02823319.1| LexA repressor [Escherichia coli O157:H7 str. EC508]
 gi|170021959|ref|YP_001726913.1| LexA repressor [Escherichia coli ATCC 8739]
 gi|170083500|ref|YP_001732820.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170684246|ref|YP_001746433.1| LexA repressor [Escherichia coli SMS-3-5]
 gi|170769501|ref|ZP_02903954.1| LexA repressor [Escherichia albertii TW07627]
 gi|187732664|ref|YP_001882734.1| LexA repressor [Shigella boydii CDC 3083-94]
 gi|188495882|ref|ZP_03003152.1| LexA repressor [Escherichia coli 53638]
 gi|191167472|ref|ZP_03029286.1| LexA repressor [Escherichia coli B7A]
 gi|191171962|ref|ZP_03033507.1| LexA repressor [Escherichia coli F11]
 gi|193063001|ref|ZP_03044093.1| LexA repressor [Escherichia coli E22]
 gi|193067911|ref|ZP_03048877.1| LexA repressor [Escherichia coli E110019]
 gi|194426760|ref|ZP_03059313.1| LexA repressor [Escherichia coli B171]
 gi|194437208|ref|ZP_03069306.1| LexA repressor [Escherichia coli 101-1]
 gi|195935810|ref|ZP_03081192.1| LexA repressor [Escherichia coli O157:H7 str. EC4024]
 gi|208805980|ref|ZP_03248317.1| LexA repressor [Escherichia coli O157:H7 str. EC4206]
 gi|208812141|ref|ZP_03253470.1| LexA repressor [Escherichia coli O157:H7 str. EC4045]
 gi|208818676|ref|ZP_03258996.1| LexA repressor [Escherichia coli O157:H7 str. EC4042]
 gi|209400985|ref|YP_002273564.1| LexA repressor [Escherichia coli O157:H7 str. EC4115]
 gi|209921526|ref|YP_002295610.1| LexA repressor [Escherichia coli SE11]
 gi|215489381|ref|YP_002331812.1| LexA repressor [Escherichia coli O127:H6 str. E2348/69]
 gi|217325242|ref|ZP_03441326.1| LexA repressor [Escherichia coli O157:H7 str. TW14588]
 gi|218556600|ref|YP_002389514.1| LexA repressor [Escherichia coli IAI1]
 gi|218561113|ref|YP_002394026.1| LexA repressor [Escherichia coli S88]
 gi|218692328|ref|YP_002400540.1| LexA repressor [Escherichia coli ED1a]
 gi|218697751|ref|YP_002405418.1| LexA repressor [Escherichia coli 55989]
 gi|218702708|ref|YP_002410337.1| LexA repressor [Escherichia coli IAI39]
 gi|218707665|ref|YP_002415184.1| LexA repressor [Escherichia coli UMN026]
 gi|227886951|ref|ZP_04004756.1| repressor lexA [Escherichia coli 83972]
 gi|237703600|ref|ZP_04534081.1| regulator for SOS(lexA) regulon [Escherichia sp. 3_2_53FAA]
 gi|238903152|ref|YP_002928948.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli BW2952]
 gi|253775329|ref|YP_003038160.1| LexA repressor [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037039|ref|ZP_04871116.1| LexA repressor [Escherichia sp. 1_1_43]
 gi|254163979|ref|YP_003047087.1| LexA repressor [Escherichia coli B str. REL606]
 gi|254796045|ref|YP_003080882.1| LexA repressor [Escherichia coli O157:H7 str. TW14359]
 gi|256019632|ref|ZP_05433497.1| LexA repressor [Shigella sp. D9]
 gi|256024916|ref|ZP_05438781.1| LexA repressor [Escherichia sp. 4_1_40B]
 gi|260846837|ref|YP_003224615.1| DNA-binding transcriptional repressor LexA of SOS regulon
           [Escherichia coli O103:H2 str. 12009]
 gi|260858153|ref|YP_003232044.1| DNA-binding transcriptional repressor LexA of SOS regulon
           [Escherichia coli O26:H11 str. 11368]
 gi|260870756|ref|YP_003237158.1| DNA-binding transcriptional repressor LexA of SOS regulon
           [Escherichia coli O111:H- str. 11128]
 gi|261223440|ref|ZP_05937721.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256975|ref|ZP_05949508.1| DNA-binding transcriptional repressor LexA of SOS regulon
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285460|ref|YP_003502278.1| LexA repressor [Escherichia coli O55:H7 str. CB9615]
 gi|293402682|ref|ZP_06646779.1| LexA repressor [Escherichia coli FVEC1412]
 gi|293407776|ref|ZP_06651616.1| LexA repressor [Escherichia coli B354]
 gi|293417548|ref|ZP_06660170.1| LexA repressor [Escherichia coli B185]
 gi|293476348|ref|ZP_06664756.1| LexA repressor [Escherichia coli B088]
 gi|298378211|ref|ZP_06988095.1| LexA repressor [Escherichia coli FVEC1302]
 gi|300817962|ref|ZP_07098175.1| repressor LexA [Escherichia coli MS 107-1]
 gi|300823583|ref|ZP_07103711.1| repressor LexA [Escherichia coli MS 119-7]
 gi|300899840|ref|ZP_07118054.1| repressor LexA [Escherichia coli MS 198-1]
 gi|300906353|ref|ZP_07124051.1| repressor LexA [Escherichia coli MS 84-1]
 gi|300917310|ref|ZP_07133983.1| repressor LexA [Escherichia coli MS 115-1]
 gi|300924305|ref|ZP_07140284.1| repressor LexA [Escherichia coli MS 182-1]
 gi|300929782|ref|ZP_07145234.1| repressor LexA [Escherichia coli MS 187-1]
 gi|300938179|ref|ZP_07152949.1| repressor LexA [Escherichia coli MS 21-1]
 gi|300946614|ref|ZP_07160873.1| repressor LexA [Escherichia coli MS 116-1]
 gi|300957548|ref|ZP_07169755.1| repressor LexA [Escherichia coli MS 175-1]
 gi|300980485|ref|ZP_07175032.1| repressor LexA [Escherichia coli MS 200-1]
 gi|300992956|ref|ZP_07180111.1| repressor LexA [Escherichia coli MS 45-1]
 gi|301019157|ref|ZP_07183358.1| repressor LexA [Escherichia coli MS 196-1]
 gi|301021562|ref|ZP_07185565.1| repressor LexA [Escherichia coli MS 69-1]
 gi|301046990|ref|ZP_07194100.1| repressor LexA [Escherichia coli MS 185-1]
 gi|301302721|ref|ZP_07208850.1| repressor LexA [Escherichia coli MS 124-1]
 gi|301330584|ref|ZP_07223192.1| repressor LexA [Escherichia coli MS 78-1]
 gi|301645030|ref|ZP_07244993.1| repressor LexA [Escherichia coli MS 146-1]
 gi|306815844|ref|ZP_07449989.1| LexA repressor [Escherichia coli NC101]
 gi|307140733|ref|ZP_07500089.1| LexA repressor [Escherichia coli H736]
 gi|307312114|ref|ZP_07591751.1| transcriptional repressor, LexA family [Escherichia coli W]
 gi|309795850|ref|ZP_07690264.1| repressor LexA [Escherichia coli MS 145-7]
 gi|312965297|ref|ZP_07779530.1| lexA repressor [Escherichia coli 2362-75]
 gi|312974164|ref|ZP_07788335.1| lexA repressor [Escherichia coli 1827-70]
 gi|331644783|ref|ZP_08345900.1| repressor LexA [Escherichia coli H736]
 gi|331649903|ref|ZP_08350980.1| repressor LexA [Escherichia coli M605]
 gi|331655863|ref|ZP_08356851.1| repressor LexA [Escherichia coli M718]
 gi|331660611|ref|ZP_08361543.1| repressor LexA [Escherichia coli TA206]
 gi|331665713|ref|ZP_08366607.1| repressor LexA [Escherichia coli TA143]
 gi|331670905|ref|ZP_08371739.1| repressor LexA [Escherichia coli TA271]
 gi|331675527|ref|ZP_08376275.1| repressor LexA [Escherichia coli TA280]
 gi|331680172|ref|ZP_08380831.1| repressor LexA [Escherichia coli H591]
 gi|331685790|ref|ZP_08386371.1| repressor LexA [Escherichia coli H299]
 gi|332280763|ref|ZP_08393176.1| regulator for SOS(lexA) regulon [Shigella sp. D9]
 gi|67467379|sp|P0A7C2|LEXA_ECOLI RecName: Full=LexA repressor
 gi|67467382|sp|P0A7C3|LEXA_ECOL6 RecName: Full=LexA repressor
 gi|67467383|sp|P0A7C4|LEXA_ECO57 RecName: Full=LexA repressor
 gi|67467384|sp|P0A7C5|LEXA_SHIFL RecName: Full=LexA repressor
 gi|123084316|sp|Q1R3P3|LEXA_ECOUT RecName: Full=LexA repressor
 gi|123342192|sp|Q0SXR0|LEXA_SHIF8 RecName: Full=LexA repressor
 gi|123343331|sp|Q0TA20|LEXA_ECOL5 RecName: Full=LexA repressor
 gi|123755500|sp|Q31TV1|LEXA_SHIBS RecName: Full=LexA repressor
 gi|123759496|sp|Q3YUU1|LEXA_SHISS RecName: Full=LexA repressor
 gi|123769502|sp|Q327V0|LEXA_SHIDS RecName: Full=LexA repressor
 gi|166224567|sp|A1AIM0|LEXA_ECOK1 RecName: Full=LexA repressor
 gi|166990799|sp|A7ZUR5|LEXA_ECO24 RecName: Full=LexA repressor
 gi|166990800|sp|A8A7E3|LEXA_ECOHS RecName: Full=LexA repressor
 gi|189046536|sp|B1IUK9|LEXA_ECOLC RecName: Full=LexA repressor
 gi|226694232|sp|B5Z184|LEXA_ECO5E RecName: Full=LexA repressor
 gi|226694233|sp|B6I5Q8|LEXA_ECOSE RecName: Full=LexA repressor
 gi|226736097|sp|B7MJ33|LEXA_ECO45 RecName: Full=LexA repressor
 gi|226736098|sp|B7NSK5|LEXA_ECO7I RecName: Full=LexA repressor
 gi|226736099|sp|B7M7V6|LEXA_ECO8A RecName: Full=LexA repressor
 gi|226736100|sp|B7NFY7|LEXA_ECOLU RecName: Full=LexA repressor
 gi|226736101|sp|B1LPK8|LEXA_ECOSM RecName: Full=LexA repressor
 gi|229621211|sp|B1XC42|LEXA_ECODH RecName: Full=LexA repressor
 gi|229621750|sp|B2TX73|LEXA_SHIB3 RecName: Full=LexA repressor
 gi|254809096|sp|B7UPK4|LEXA_ECO27 RecName: Full=LexA repressor
 gi|254809097|sp|B7LAZ0|LEXA_ECO55 RecName: Full=LexA repressor
 gi|254809098|sp|B7N2Q0|LEXA_ECO81 RecName: Full=LexA repressor
 gi|259494472|sp|C5A136|LEXA_ECOBW RecName: Full=LexA repressor
 gi|12518992|gb|AAG59242.1|AE005637_6 regulator for SOS(lexA) regulon [Escherichia coli O157:H7 str.
           EDL933]
 gi|26111257|gb|AAN83440.1|AE016770_240 LexA repressor [Escherichia coli CFT073]
 gi|146608|gb|AAA24067.1| SOS function regulatory protein (lexA) [Escherichia coli]
 gi|396378|gb|AAC43137.1| ORF_o202b [Escherichia coli str. K-12 substr. MG1655]
 gi|1790476|gb|AAC77013.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13364503|dbj|BAB38449.1| regulator for SOS regulon [Escherichia coli O157:H7 str. Sakai]
 gi|24054674|gb|AAN45584.1| regulator for SOS(lexA) regulon [Shigella flexneri 2a str. 301]
 gi|30042892|gb|AAP18615.1| regulator for SOS(lexA) regulon [Shigella flexneri 2a str. 2457T]
 gi|73858014|gb|AAZ90721.1| regulator for SOS(lexA) regulon [Shigella sonnei Ss046]
 gi|81243695|gb|ABB64405.1| regulator for SOS regulon [Shigella dysenteriae Sd197]
 gi|81247799|gb|ABB68507.1| regulator for SOS(lexA) regulon [Shigella boydii Sb227]
 gi|85676795|dbj|BAE78045.1| DNA-binding transcriptional repressor [Escherichia coli str. K12
           substr. W3110]
 gi|91075140|gb|ABE10021.1| LexA, subunit of LexA transcriptional repressor [Escherichia coli
           UTI89]
 gi|110345972|gb|ABG72209.1| LexA repressor [Escherichia coli 536]
 gi|110617488|gb|ABF06155.1| regulator for SOS(lexA) regulon [Shigella flexneri 5 str. 8401]
 gi|115515435|gb|ABJ03510.1| LexA repressor [Escherichia coli APEC O1]
 gi|157069192|gb|ABV08447.1| LexA repressor [Escherichia coli HS]
 gi|157078087|gb|ABV17795.1| LexA repressor [Escherichia coli E24377A]
 gi|169756887|gb|ACA79586.1| transcriptional repressor, LexA family [Escherichia coli ATCC 8739]
 gi|169891335|gb|ACB05042.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170121558|gb|EDS90489.1| LexA repressor [Escherichia albertii TW07627]
 gi|170521964|gb|ACB20142.1| LexA repressor [Escherichia coli SMS-3-5]
 gi|187429656|gb|ACD08930.1| LexA repressor [Shigella boydii CDC 3083-94]
 gi|187769832|gb|EDU33676.1| LexA repressor [Escherichia coli O157:H7 str. EC4196]
 gi|188015015|gb|EDU53137.1| LexA repressor [Escherichia coli O157:H7 str. EC4113]
 gi|188491081|gb|EDU66184.1| LexA repressor [Escherichia coli 53638]
 gi|189001764|gb|EDU70750.1| LexA repressor [Escherichia coli O157:H7 str. EC4076]
 gi|189357457|gb|EDU75876.1| LexA repressor [Escherichia coli O157:H7 str. EC4401]
 gi|189364225|gb|EDU82644.1| LexA repressor [Escherichia coli O157:H7 str. EC4486]
 gi|189368539|gb|EDU86955.1| LexA repressor [Escherichia coli O157:H7 str. EC4501]
 gi|189375044|gb|EDU93460.1| LexA repressor [Escherichia coli O157:H7 str. EC869]
 gi|189379093|gb|EDU97509.1| LexA repressor [Escherichia coli O157:H7 str. EC508]
 gi|190902514|gb|EDV62249.1| LexA repressor [Escherichia coli B7A]
 gi|190907727|gb|EDV67321.1| LexA repressor [Escherichia coli F11]
 gi|192931260|gb|EDV83862.1| LexA repressor [Escherichia coli E22]
 gi|192958886|gb|EDV89323.1| LexA repressor [Escherichia coli E110019]
 gi|194415096|gb|EDX31365.1| LexA repressor [Escherichia coli B171]
 gi|194423764|gb|EDX39753.1| LexA repressor [Escherichia coli 101-1]
 gi|208725781|gb|EDZ75382.1| LexA repressor [Escherichia coli O157:H7 str. EC4206]
 gi|208733418|gb|EDZ82105.1| LexA repressor [Escherichia coli O157:H7 str. EC4045]
 gi|208738799|gb|EDZ86481.1| LexA repressor [Escherichia coli O157:H7 str. EC4042]
 gi|209162385|gb|ACI39818.1| LexA repressor [Escherichia coli O157:H7 str. EC4115]
 gi|209751318|gb|ACI73966.1| regulator for SOS regulon [Escherichia coli]
 gi|209751320|gb|ACI73967.1| regulator for SOS regulon [Escherichia coli]
 gi|209751322|gb|ACI73968.1| regulator for SOS regulon [Escherichia coli]
 gi|209751324|gb|ACI73969.1| regulator for SOS regulon [Escherichia coli]
 gi|209751326|gb|ACI73970.1| regulator for SOS regulon [Escherichia coli]
 gi|209914785|dbj|BAG79859.1| SOS response regulator [Escherichia coli SE11]
 gi|215267453|emb|CAS11906.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217321463|gb|EEC29887.1| LexA repressor [Escherichia coli O157:H7 str. TW14588]
 gi|218354483|emb|CAV01328.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli 55989]
 gi|218363369|emb|CAR01022.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli IAI1]
 gi|218367882|emb|CAR05677.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli S88]
 gi|218372694|emb|CAR20570.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli IAI39]
 gi|218429892|emb|CAR10719.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli ED1a]
 gi|218434762|emb|CAR15695.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli UMN026]
 gi|222035757|emb|CAP78502.1| LexA repressor [Escherichia coli LF82]
 gi|226840145|gb|EEH72147.1| LexA repressor [Escherichia sp. 1_1_43]
 gi|226901512|gb|EEH87771.1| regulator for SOS(lexA) regulon [Escherichia sp. 3_2_53FAA]
 gi|227836092|gb|EEJ46558.1| repressor lexA [Escherichia coli 83972]
 gi|238860987|gb|ACR62985.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli BW2952]
 gi|242379572|emb|CAQ34392.1| LexA transcriptional repressor [Escherichia coli BL21(DE3)]
 gi|253326373|gb|ACT30975.1| SOS-response transcriptional repressor, LexA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975880|gb|ACT41551.1| LexA repressor [Escherichia coli B str. REL606]
 gi|253980036|gb|ACT45706.1| LexA repressor [Escherichia coli BL21(DE3)]
 gi|254595445|gb|ACT74806.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli O157:H7 str. TW14359]
 gi|257756802|dbj|BAI28304.1| DNA-binding transcriptional repressor LexA of SOS regulon
           [Escherichia coli O26:H11 str. 11368]
 gi|257761984|dbj|BAI33481.1| DNA-binding transcriptional repressor LexA of SOS regulon
           [Escherichia coli O103:H2 str. 12009]
 gi|257767112|dbj|BAI38607.1| DNA-binding transcriptional repressor LexA of SOS regulon
           [Escherichia coli O111:H- str. 11128]
 gi|260451128|gb|ACX41550.1| SOS-response transcriptional repressor, LexA [Escherichia coli DH1]
 gi|281181109|dbj|BAI57439.1| SOS response regulator [Escherichia coli SE15]
 gi|281603472|gb|ADA76456.1| LexA repressor [Shigella flexneri 2002017]
 gi|284924137|emb|CBG37236.1| LexA repressor [Escherichia coli 042]
 gi|290765333|gb|ADD59294.1| LexA repressor [Escherichia coli O55:H7 str. CB9615]
 gi|291320801|gb|EFE60243.1| LexA repressor [Escherichia coli B088]
 gi|291429597|gb|EFF02611.1| LexA repressor [Escherichia coli FVEC1412]
 gi|291430266|gb|EFF03264.1| LexA repressor [Escherichia coli B185]
 gi|291472027|gb|EFF14509.1| LexA repressor [Escherichia coli B354]
 gi|294492359|gb|ADE91115.1| LexA repressor [Escherichia coli IHE3034]
 gi|298280545|gb|EFI22046.1| LexA repressor [Escherichia coli FVEC1302]
 gi|299882381|gb|EFI90592.1| repressor LexA [Escherichia coli MS 196-1]
 gi|300301078|gb|EFJ57463.1| repressor LexA [Escherichia coli MS 185-1]
 gi|300307787|gb|EFJ62307.1| repressor LexA [Escherichia coli MS 200-1]
 gi|300315722|gb|EFJ65506.1| repressor LexA [Escherichia coli MS 175-1]
 gi|300356611|gb|EFJ72481.1| repressor LexA [Escherichia coli MS 198-1]
 gi|300397996|gb|EFJ81534.1| repressor LexA [Escherichia coli MS 69-1]
 gi|300401801|gb|EFJ85339.1| repressor LexA [Escherichia coli MS 84-1]
 gi|300406730|gb|EFJ90268.1| repressor LexA [Escherichia coli MS 45-1]
 gi|300415454|gb|EFJ98764.1| repressor LexA [Escherichia coli MS 115-1]
 gi|300419470|gb|EFK02781.1| repressor LexA [Escherichia coli MS 182-1]
 gi|300453713|gb|EFK17333.1| repressor LexA [Escherichia coli MS 116-1]
 gi|300456837|gb|EFK20330.1| repressor LexA [Escherichia coli MS 21-1]
 gi|300462288|gb|EFK25781.1| repressor LexA [Escherichia coli MS 187-1]
 gi|300523915|gb|EFK44984.1| repressor LexA [Escherichia coli MS 119-7]
 gi|300529372|gb|EFK50434.1| repressor LexA [Escherichia coli MS 107-1]
 gi|300841941|gb|EFK69701.1| repressor LexA [Escherichia coli MS 124-1]
 gi|300843462|gb|EFK71222.1| repressor LexA [Escherichia coli MS 78-1]
 gi|301076652|gb|EFK91458.1| repressor LexA [Escherichia coli MS 146-1]
 gi|305850819|gb|EFM51275.1| LexA repressor [Escherichia coli NC101]
 gi|306907921|gb|EFN38422.1| transcriptional repressor, LexA family [Escherichia coli W]
 gi|307556188|gb|ADN48963.1| LexA repressor [Escherichia coli ABU 83972]
 gi|307629092|gb|ADN73396.1| LexA repressor [Escherichia coli UM146]
 gi|308120511|gb|EFO57773.1| repressor LexA [Escherichia coli MS 145-7]
 gi|309704455|emb|CBJ03804.1| LexA repressor [Escherichia coli ETEC H10407]
 gi|310331698|gb|EFP98954.1| lexA repressor [Escherichia coli 1827-70]
 gi|312289971|gb|EFR17858.1| lexA repressor [Escherichia coli 2362-75]
 gi|312948622|gb|ADR29449.1| LexA repressor [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648760|gb|EFS13200.1| lexA repressor [Shigella flexneri 2a str. 2457T]
 gi|315063369|gb|ADT77696.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           coli W]
 gi|315138597|dbj|BAJ45756.1| LexA repressor [Escherichia coli DH1]
 gi|315254714|gb|EFU34682.1| repressor LexA [Escherichia coli MS 85-1]
 gi|315287864|gb|EFU47266.1| repressor LexA [Escherichia coli MS 110-3]
 gi|315291524|gb|EFU50884.1| repressor LexA [Escherichia coli MS 153-1]
 gi|315297516|gb|EFU56795.1| repressor LexA [Escherichia coli MS 16-3]
 gi|315617411|gb|EFU98017.1| lexA repressor [Escherichia coli 3431]
 gi|320174471|gb|EFW49611.1| SOS-response repressor and protease LexA [Shigella dysenteriae CDC
           74-1112]
 gi|320179039|gb|EFW53998.1| SOS-response repressor and protease LexA [Shigella boydii ATCC
           9905]
 gi|320187474|gb|EFW62162.1| SOS-response repressor and protease LexA [Shigella flexneri CDC
           796-83]
 gi|320190854|gb|EFW65504.1| SOS-response repressor and protease LexA [Escherichia coli O157:H7
           str. EC1212]
 gi|320193404|gb|EFW68041.1| SOS-response repressor and protease LexA [Escherichia coli
           WV_060327]
 gi|320200826|gb|EFW75412.1| SOS-response repressor and protease LexA [Escherichia coli EC4100B]
 gi|320638800|gb|EFX08446.1| LexA repressor [Escherichia coli O157:H7 str. G5101]
 gi|320644168|gb|EFX13233.1| LexA repressor [Escherichia coli O157:H- str. 493-89]
 gi|320649487|gb|EFX18011.1| LexA repressor [Escherichia coli O157:H- str. H 2687]
 gi|320654883|gb|EFX22844.1| LexA repressor [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660731|gb|EFX28188.1| LexA repressor [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665660|gb|EFX32697.1| LexA repressor [Escherichia coli O157:H7 str. LSU-61]
 gi|323155619|gb|EFZ41794.1| lexA repressor [Escherichia coli EPECa14]
 gi|323161403|gb|EFZ47310.1| lexA repressor [Escherichia coli E128010]
 gi|323164562|gb|EFZ50363.1| lexA repressor [Shigella sonnei 53G]
 gi|323177612|gb|EFZ63197.1| lexA repressor [Escherichia coli 1180]
 gi|323182147|gb|EFZ67557.1| lexA repressor [Escherichia coli 1357]
 gi|323190092|gb|EFZ75370.1| lexA repressor [Escherichia coli RN587/1]
 gi|323380568|gb|ADX52836.1| transcriptional repressor, LexA family [Escherichia coli KO11]
 gi|323935532|gb|EGB31863.1| LexA repressor [Escherichia coli E1520]
 gi|323946176|gb|EGB42210.1| LexA repressor [Escherichia coli H120]
 gi|323950413|gb|EGB46294.1| LexA repressor [Escherichia coli H252]
 gi|323954495|gb|EGB50279.1| LexA repressor [Escherichia coli H263]
 gi|323960450|gb|EGB56083.1| LexA repressor [Escherichia coli H489]
 gi|323965705|gb|EGB61157.1| LexA repressor [Escherichia coli M863]
 gi|323969823|gb|EGB65104.1| LexA repressor [Escherichia coli TA007]
 gi|323975326|gb|EGB70429.1| LexA repressor [Escherichia coli TW10509]
 gi|324007800|gb|EGB77019.1| repressor LexA [Escherichia coli MS 57-2]
 gi|324014293|gb|EGB83512.1| repressor LexA [Escherichia coli MS 60-1]
 gi|324017114|gb|EGB86333.1| repressor LexA [Escherichia coli MS 117-3]
 gi|324118615|gb|EGC12507.1| LexA repressor [Escherichia coli E1167]
 gi|326340544|gb|EGD64342.1| SOS-response repressor and protease LexA [Escherichia coli O157:H7
           str. 1125]
 gi|326346515|gb|EGD70249.1| SOS-response repressor and protease LexA [Escherichia coli O157:H7
           str. 1044]
 gi|327250387|gb|EGE62100.1| lexA repressor [Escherichia coli STEC_7v]
 gi|330908364|gb|EGH36883.1| SOS-response repressor and protease LexA [Escherichia coli AA86]
 gi|331035758|gb|EGI07996.1| repressor LexA [Escherichia coli H736]
 gi|331041283|gb|EGI13436.1| repressor LexA [Escherichia coli M605]
 gi|331046217|gb|EGI18307.1| repressor LexA [Escherichia coli M718]
 gi|331051653|gb|EGI23692.1| repressor LexA [Escherichia coli TA206]
 gi|331056764|gb|EGI28758.1| repressor LexA [Escherichia coli TA143]
 gi|331061819|gb|EGI33744.1| repressor LexA [Escherichia coli TA271]
 gi|331067301|gb|EGI38708.1| repressor LexA [Escherichia coli TA280]
 gi|331071635|gb|EGI42971.1| repressor LexA [Escherichia coli H591]
 gi|331076987|gb|EGI48204.1| repressor LexA [Escherichia coli H299]
 gi|332083535|gb|EGI88755.1| lexA repressor [Shigella boydii 5216-82]
 gi|332087758|gb|EGI92884.1| lexA repressor [Shigella boydii 3594-74]
 gi|332103115|gb|EGJ06461.1| regulator for SOS(lexA) regulon [Shigella sp. D9]
 gi|332346042|gb|AEE59376.1| repressor protein LexA [Escherichia coli UMNK88]
 gi|332751987|gb|EGJ82380.1| lexA repressor [Shigella flexneri 4343-70]
 gi|332752157|gb|EGJ82549.1| lexA repressor [Shigella flexneri K-671]
 gi|332753325|gb|EGJ83706.1| lexA repressor [Shigella flexneri 2747-71]
 gi|332764750|gb|EGJ94979.1| lexA repressor [Shigella flexneri 2930-71]
 gi|332998110|gb|EGK17714.1| lexA repressor [Shigella flexneri VA-6]
 gi|332999040|gb|EGK18629.1| lexA repressor [Shigella flexneri K-272]
 gi|332999140|gb|EGK18727.1| lexA repressor [Shigella flexneri K-218]
 gi|333014286|gb|EGK33642.1| lexA repressor [Shigella flexneri K-304]
          Length = 202

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|297566304|ref|YP_003685276.1| XRE family transcriptional regulator [Meiothermus silvanus DSM
           9946]
 gi|296850753|gb|ADH63768.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM
           9946]
          Length = 246

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 67/216 (31%), Gaps = 26/216 (12%)

Query: 13  IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE--SIFKILAATNETI 69
           ID+      L + +  A K G+  ++ +  +R        W  T+  ++ ++  A    +
Sbjct: 25  IDQAIREQGLRSYNEFADKHGIGRSTLSNLRRGRQSPTGSWMKTDLKTLERLALALGRPL 84

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L++  +        + K   +    P         G     N                
Sbjct: 85  TDLIERYYE------SENKHELIRPKVPLVGWVGAGPGQLTEENGI----------YVEP 128

Query: 130 IYAIQTQDTRHKTQDTSMLPL---YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             A        +    S          GDI++++ +        ++ + + G  + K+L 
Sbjct: 129 ELARGRNLVAFRVFGDSGCAGRFPICHGDIILVDQSFNGRPNWPVVAQLKDGSYICKLLK 188

Query: 187 SRRGRSIDLMSLNC--CYPVDTVEMSDI-EWIARIL 219
             R  S  L+S N         + + ++   I  ++
Sbjct: 189 VERTGSY-LVSANPLASNGPTAIPIEEVDRIIGPVV 223


>gi|322514107|ref|ZP_08067177.1| LexA repressor [Actinobacillus ureae ATCC 25976]
 gi|322120037|gb|EFX92013.1| LexA repressor [Actinobacillus ureae ATCC 25976]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 61/218 (27%), Gaps = 33/218 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I++ +    E   + P+   +AR+ G                     + E +  +  
Sbjct: 23  QQEIFDFVKHHIETTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 67

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                             T+      +       +        G    G     +   E 
Sbjct: 68  K---------GYIEMLSGTSRGIRILVNNETEEAANDDDLPLIGKVAAGTPIMAIEHVES 118

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG       D   K    SM  +    GD+L ++       G  ++ +    ++  
Sbjct: 119 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLTVHKTNFARNGQVVVARVD-DEVTV 177

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       V+      +IE IA
Sbjct: 178 KRLEKK-GDLIYLHPENDELEPIIVDPRIEYIEIEGIA 214


>gi|290476966|ref|YP_003469877.1| transcriptional repressor for SOS response (signal peptidase of
           LexA family) [Xenorhabdus bovienii SS-2004]
 gi|289176310|emb|CBJ83115.1| transcriptional repressor for SOS response (signal peptidase of
           LexA family) [Xenorhabdus bovienii SS-2004]
          Length = 204

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 64/217 (29%), Gaps = 38/217 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   ++++  +     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTARQQQVYNLVRDHISQTGMPPTRAEIAARLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                             L     G+ G    G    G   
Sbjct: 44  EEHLKALARKGV-------------IEIISGASRGLRLLLEEEGAAGLPLIGRVAAGEPL 90

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +        D   +    SM  +    GD+L ++    V+ G  ++ +
Sbjct: 91  LAQEHIESHYKVDPALFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVHNGQIIVAR 150

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               ++  K    + G  I+L++ N  +    V++ +
Sbjct: 151 I-EDEVTVKRF-KQVGNKIELIAENPEFEPIVVDLCE 185


>gi|260551416|ref|ZP_05825616.1| merops peptidase family S24 [Acinetobacter sp. RUH2624]
 gi|260405579|gb|EEW99071.1| merops peptidase family S24 [Acinetobacter sp. RUH2624]
          Length = 240

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 68/212 (32%), Gaps = 19/212 (8%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           LT +GL++ +G+   +  + +    +     P+ +++ K+      T  +LL        
Sbjct: 28  LTVTGLSKLSGVPQPTLFRWESGQFQA----PTIKTVEKLAKWCGLTTEELLYKDIEKIL 83

Query: 82  TTEKKEKEIPLLYFPPSGSGG------FFDSGVFPTGNKWNTVGV---PEIRSPHNGIYA 132
             +  +  + L       +                 G+  +   V    E+      +  
Sbjct: 84  KNKNSDSNLKLDNNVDLNNKINIEGDLVPVISWVAAGSFTDVQTVLKDTEVIEWLPPMKK 143

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTGDIVAKVLISR 188
                        SM P +  GD + +N    V         ++      +   K LI  
Sbjct: 144 AGKNGYGLIVTGYSMYPKFEPGDRIYVNPDYPVFDLKTNDLVIVACEGESEATFKKLIIE 203

Query: 189 RGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
                 L  LN  +P   +++++  + + +++
Sbjct: 204 GNEKY-LEPLNSKWPEQIIKLTEGCKLVGKVV 234


>gi|210612747|ref|ZP_03289462.1| hypothetical protein CLONEX_01664 [Clostridium nexile DSM 1787]
 gi|210151440|gb|EEA82448.1| hypothetical protein CLONEX_01664 [Clostridium nexile DSM 1787]
          Length = 205

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 59/221 (26%), Gaps = 37/221 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGR-NRWPSTESIF 59
              +I E I     R    P+   +     L  TS   +  +     G   R P+     
Sbjct: 9   KQLEILEYIKSEILRIGYPPAVREICEAVNLKSTSSVHSHLETLEKNGYIRRDPTKPRAI 68

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I+  T     + +                       P          +    N  N   
Sbjct: 69  EIIDDTFNLTRREMVN--------------------VPIVGQVAAGEPILAEQNITNYFP 108

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P         +    +      +  SM+      GD++++ S    + G+ ++      
Sbjct: 109 IPIE-------FMPNNETFLLTVKGESMINAGILDGDMVLVESTSVASNGEMVVALVD-D 160

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K           L   N       V  S++E + +++
Sbjct: 161 SATVKTFYKEE-GIYRLQPENDTMEPIIV--SEVEILGKVI 198


>gi|157148065|ref|YP_001455384.1| LexA repressor [Citrobacter koseri ATCC BAA-895]
 gi|166224566|sp|A8AN85|LEXA_CITK8 RecName: Full=LexA repressor
 gi|157085270|gb|ABV14948.1| hypothetical protein CKO_03872 [Citrobacter koseri ATCC BAA-895]
          Length = 202

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLLDEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRE 183


>gi|330880639|gb|EGH14788.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 202

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 45  --KHIMALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 98  IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L     + + L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 187


>gi|170721919|ref|YP_001749607.1| peptidase S24/S26 domain-containing protein [Pseudomonas putida
           W619]
 gi|169759922|gb|ACA73238.1| peptidase S24 and S26 domain protein [Pseudomonas putida W619]
          Length = 152

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
             P G         E     + I+ ++       K +  SM       GDI+I++   + 
Sbjct: 32  HVPAGFPSPAADHLEGHISLDEIFDLRAPHVYLVKVEGDSMQGAGIYSGDIVIVDRGREA 91

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             GD ++      + V K L  R    + L S N  YP   +   D   I  ++  S
Sbjct: 92  EHGDIVIAAVNC-EPVCKRLHRRDA-VVILKSENPAYPPRYIMEGDELVIWGVVRYS 146


>gi|218551355|ref|YP_002385147.1| LexA repressor [Escherichia fergusonii ATCC 35469]
 gi|226736102|sp|B7LL15|LEXA_ESCF3 RecName: Full=LexA repressor
 gi|218358897|emb|CAQ91556.1| DNA-binding transcriptional repressor of SOS regulon [Escherichia
           fergusonii ATCC 35469]
 gi|324112319|gb|EGC06297.1| LexA repressor [Escherichia fergusonii B253]
 gi|325499623|gb|EGC97482.1| LexA repressor [Escherichia fergusonii ECD227]
          Length = 202

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTVRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|71736633|ref|YP_274867.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557186|gb|AAZ36397.1| LexA repressor [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320324029|gb|EFW80112.1| LexA repressor [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329027|gb|EFW85026.1| LexA repressor [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 205

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 4   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 48  --KHIMALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L     + + L+  N  Y    V    
Sbjct: 157 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 190


>gi|302335734|ref|YP_003800941.1| SOS-response transcriptional repressor, LexA [Olsenella uli DSM
           7084]
 gi|301319574|gb|ADK68061.1| SOS-response transcriptional repressor, LexA [Olsenella uli DSM
           7084]
          Length = 220

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 55/219 (25%), Gaps = 22/219 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +I+E I      H   PS   +    GL  P++ +   +            + +  I 
Sbjct: 10  QAQIYEFICGYTGEHGYPPSVREIGAAVGLASPSTVHMHLKV----------LQELGYIK 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             + +     +     D            +     +        G    G         E
Sbjct: 60  RDSKKPRTIEVVSEGGDATPPSPSTPLATVEEDASANVISLPLVGRVAAGTPILAEQNVE 119

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                       +     + +  SM+      GD +++    + + G+ ++         
Sbjct: 120 ETLTLPTSIVGDSSSFVLRVRGQSMINAGIFDGDYIVVKEQHEAHDGEIVVALID-DSAT 178

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
            K     R   + L   N       V    +    + R+
Sbjct: 179 VKTFYRER-GRVRLQPENDTMNPIYV----VNPTILGRV 212


>gi|145306753|ref|YP_001144417.1| peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense
           MSR-1]
 gi|144901519|emb|CAM78241.1| Peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 192

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 8/162 (4%)

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTV 118
             +              D        +      F P+       S + P G      + +
Sbjct: 25  CRSLAIGAIVPSMFSRRDNAPLPPGTRLASSRAFVPADGAAPIYSALVPAGFPSPADDHL 84

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   H  +          +    SM       GD+L+++ ++Q   GD ++     
Sbjct: 85  E--GKLDLHELMVKRPAATFFCRADGDSMTGAGIHSGDLLVVDRSVQPQDGDIVVATLD- 141

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G +  K L  +     +L   N  YP   +   D   I  ++
Sbjct: 142 GGLTVKTL-RKTTEGWELAPANPDYPSFPLNQEDGVQIWGVV 182


>gi|37528202|ref|NP_931547.1| LexA repressor [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|44888094|sp|Q7MZB8|LEXA_PHOLL RecName: Full=LexA repressor
 gi|36787639|emb|CAE16746.1| LexA repressor [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 201

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
           G    G    G         E     +      + D   +    SM  +    GD+L ++
Sbjct: 74  GLPLIGRVAAGEPLLAQEHIESHYQVDPALFKPSADFLLRVSGMSMKDVGIMDGDLLAVH 133

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               V  G  ++ +    ++  K    + G  ++L++ N  +    V++ +
Sbjct: 134 KTQNVRNGQIIVARI-EDEVTVKRF-KQTGNKVELLAENPEFKPIEVDLRE 182


>gi|217970698|ref|YP_002355932.1| LexA repressor [Thauera sp. MZ1T]
 gi|217508025|gb|ACK55036.1| SOS-response transcriptional repressor, LexA [Thauera sp. MZ1T]
          Length = 202

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 5/178 (2%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  +E   R P+   +       +    +      +       +E     + 
Sbjct: 12  QQEILDFIRSTVESEGRPPTRAEVCTAFGFRSPNAAETHLRALAAKGAILLEEGRARGIR 71

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
              +   G    G    G+        E R   +        D   + +  SM       
Sbjct: 72  LAEAL--GLPLVGRVAAGSPILAAEHVEARYQLDPALFSPRADYLLRVRGMSMRDAGILD 129

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           GD++ ++   +   G  ++ +    D+  K L  +    ++L+  N  Y    V+   
Sbjct: 130 GDLIAVHRNSEARNGQIVVARVD-DDVTVKTLQRKGP-VVELLPANPDYTPIVVDTRR 185


>gi|220930677|ref|YP_002507586.1| XRE family transcriptional regulator [Clostridium cellulolyticum
           H10]
 gi|220001005|gb|ACL77606.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
           H10]
          Length = 281

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 67/221 (30%), Gaps = 16/221 (7%)

Query: 7   KKIWEAIDRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           K I  A D   E     +    LA   G+   +  K  +   E          + K L  
Sbjct: 67  KSILSASDLYKEFIEQKVPIEKLADNIGISADTLFKILK--SEEGATEADYYRLCKWLGY 124

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           + E   +           + +  + +  +  P  G         F   N           
Sbjct: 125 SEEKAEEFYLRNSPLTNKSFRFTQNLDFIPVPVLGLIRAGQPA-FAEENNEGYYPTDRQF 183

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
              +  Y         + +  SM   +++G ++++     +  G+  ++     D   K 
Sbjct: 184 ISDDHEY------FYLRIKGDSMDKEFKEGSLVLVQIQSTLESGEIGVVLINGFDATVKK 237

Query: 185 LISRRGRSIDLMSL--NCCYPVDTVE--MSDIEWIARILWA 221
           +  R    I LM    N  +   T +    +I+ + +++ A
Sbjct: 238 VFIR-DNLITLMPQSNNEDHQPQTYDTVKEEIKILGKVVLA 277


>gi|91786898|ref|YP_547850.1| putative phage repressor [Polaromonas sp. JS666]
 gi|91696123|gb|ABE42952.1| putative phage repressor [Polaromonas sp. JS666]
          Length = 284

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 50/206 (24%), Gaps = 13/206 (6%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK-----ILAATNETICQLLDLPFSDG 80
            +A   G+   +    +R   +        E + K           +       L     
Sbjct: 77  DVAATVGVHRNTIWNIERG--DSLPDAFELEVLAKEYNTTPAHLLGDERQGKARLTAMVP 134

Query: 81  RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH 140
            +    + +  +                    +             ++   A        
Sbjct: 135 NSVHAVQVDAFIYVPLFDLKSSAGKDAFNDIESVIAMRPFDARFIRYDLGIAHNDIAMSM 194

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
                SM P     D ++ +        + + +    G ++ K L    G+ + + S N 
Sbjct: 195 -VVGVSMEPWLHSKDAVLTDLQDHDALTEGIHVVRLDGALLVKKLQRLPGKILRVSSYNQ 253

Query: 201 CYPVDTV-----EMSDIEWIARILWA 221
            Y    +        D   + R+ WA
Sbjct: 254 AYEPFDIQGHEDPDRDFSVLGRVRWA 279


>gi|147670021|ref|YP_001214839.1| SOS-response transcriptional repressor, LexA [Dehalococcoides sp.
           BAV1]
 gi|146270969|gb|ABQ17961.1| SOS-response transcriptional repressor, LexA [Dehalococcoides sp.
           BAV1]
          Length = 214

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 60/213 (28%), Gaps = 23/213 (10%)

Query: 11  EAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + I R   R+   PS   +     +  TS                + + + KI     + 
Sbjct: 14  DFIARFRRRYGYPPSIRDIVSGCNISSTSVVDY------------NLKILQKIGLIRRQA 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                        T E +     +            +S  F       ++ V E  +   
Sbjct: 62  EISRGIELVGTEETNEGRISIPVIGQIAAGTPIPVPESDSFAVVTSDESIEVTEDLTRGR 121

Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLI 186
                       + +  SM   L   GD++I+     V+ G+   +      ++  K + 
Sbjct: 122 ------ENIYALRVKGVSMIEDLINDGDLVIMQHTQTVDNGETAAVWLKDQKEVTLKRIY 175

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 + L   N   P    +  ++E   R++
Sbjct: 176 -MEPGRVRLQPANRTMPPIYTKPDNVEIQGRVI 207


>gi|300088777|ref|YP_003759299.1| LexA family transcriptional regulator [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528510|gb|ADJ26978.1| transcriptional repressor, LexA family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 207

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 11/196 (5%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           L   +     RF  + +   P+ + + +I   +  +    ++     G    +  K   +
Sbjct: 12  LQRKTLEAICRFV-DAKGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGI 70

Query: 93  -----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
                     +        G+   G           +           Q    +    SM
Sbjct: 71  AVARRPSEMAASLVSVPVVGMVAAGRPILAEENITGQVLVESDVVRSGQHFALRAVGDSM 130

Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           +      GD++I+        GD ++      +   K L   +   I+L+  N       
Sbjct: 131 VGAGINDGDLIIVRQQPIAEDGDIVVALFN-DEATVKRL-RIKDELIELVPENPEVRKIR 188

Query: 207 V-EMSDIEWIARIL-W 220
           +    D+  + +++ W
Sbjct: 189 IRPEDDLRVLGKVVGW 204


>gi|260842739|ref|YP_003220517.1| putative phage repressor protein CI [Escherichia coli O103:H2 str.
           12009]
 gi|257757886|dbj|BAI29383.1| probable phage repressor protein CI [Escherichia coli O103:H2 str.
           12009]
          Length = 215

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 65/210 (30%), Gaps = 17/210 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ-----LLDLPFSD 79
           + LA   G+D  + ++ +     G+ +  + +++  I  +    I               
Sbjct: 4   ADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGVDIADLFTSAHKSNAVYK 59

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136
               E   +   +             +G+   G+  + +   E R+ +            
Sbjct: 60  NSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +  SM P    GD++ ++ +I    GD + +      I  K L       + ++
Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178

Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223
           S N  Y    +            ++L  SQ
Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207


>gi|148653141|ref|YP_001280234.1| putative prophage repressor [Psychrobacter sp. PRwf-1]
 gi|148572225|gb|ABQ94284.1| putative prophage repressor [Psychrobacter sp. PRwf-1]
          Length = 219

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 63/216 (29%), Gaps = 27/216 (12%)

Query: 14  DRMA---ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL----AATN 66
           DR+    +   L    L +  G+   + +          +   +   + K L        
Sbjct: 8   DRLIYAKDEKGLKQVDLVKATGVSKGTVSNWISGKTTPDD-TVALGDLAKALGVSVDWLV 66

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                      +     + + +  P+L +  +G    +                  + + 
Sbjct: 67  TGRESNNHSFSNVRPVDKHEIRMAPVLNYVQAGEFCEYFDDAIA-------DRFEPVSTK 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVL 185
           H             +    SM+P +   +++++N  +Q + GD ++ K      +  K  
Sbjct: 120 H------PKNSYWVELNGLSMIPDFYPEELVLINPDMQPSPGDYVVAKKAGENAVTFKKW 173

Query: 186 ISRR--GRSI---DLMSLNCCYPVDTVEMSDIEWIA 216
             R      +   +L+ LN  +P+     +      
Sbjct: 174 RPRGFDDDGVEYCELVPLNPDFPIIDSRHTPFTICG 209


>gi|110833870|ref|YP_692729.1| LexA repressor [Alcanivorax borkumensis SK2]
 gi|123050584|sp|Q0VQU1|LEXA_ALCBS RecName: Full=LexA repressor
 gi|110646981|emb|CAL16457.1| LexA repressor [Alcanivorax borkumensis SK2]
          Length = 204

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 57/214 (26%), Gaps = 33/214 (15%)

Query: 6   HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +++ + I    + + +  T + +A   G          +       R    +   K+  
Sbjct: 9   QQQVLDCIRECLKDNGMAPTRAEIADIMGFQS-------KNAASDHLRALERKGYIKL-- 59

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                 + + I LL     G       G    G     +   E 
Sbjct: 60  -------------------HSDRSRGIQLLDHAYWGEEELPVVGKVAAGIPIEAIENVER 100

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P       Q      K Q  SM+      GD++ +  +     G+ ++ +    ++  
Sbjct: 101 TVPVPQGLFKQRPTYLLKVQGDSMVDAGIFDGDLIAVRKSNVARSGEIVVARID-EEVTV 159

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           K L      S  L+  N  Y    V    +    
Sbjct: 160 KTL-KLNKSSATLLPANEAYEPIKVPADQLIIEG 192


>gi|56475434|ref|YP_157023.1| putative bacteriophage-related transcriptional repressor
           [Aromatoleum aromaticum EbN1]
 gi|56311477|emb|CAI06122.1| putative bacteriophage-related transcriptional repressor
           [Aromatoleum aromaticum EbN1]
          Length = 229

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 69/219 (31%), Gaps = 22/219 (10%)

Query: 14  DRMAERHNLTP--SGLARKAGL--DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           +R+  R    P     AR+ GL    +   +  +       R  S E+        N  +
Sbjct: 11  ERLKARFGAVPNREKFAREIGLHGGGSMIYQHIKGI-----RPISREAAVAYAKGFNCRL 65

Query: 70  CQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVG 119
            +        +    S    T  +  E P +   P   G          G   +  + + 
Sbjct: 66  EEISPRIALEIQQATSVLSPTPDRPPESPNICAGPDRKGKVPLISWVRAGEFAHAADLLP 125

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           V E          +Q      + Q  SM P +  G I+++   +    GD ++ +    +
Sbjct: 126 VGEAYEWVETGVNVQPHTFALRVQGDSMEPEFVAGTIIVIEPHMVAEPGDYVIARNGDNE 185

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+      + L  LN  YP+  +  +    I  +
Sbjct: 186 ATFKQLVRDGAD-LYLKPLNPRYPIKPLGAT--AIIGVV 221


>gi|162149420|ref|YP_001603881.1| protease [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787997|emb|CAP57601.1| putative protease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 254

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 74/244 (30%), Gaps = 27/244 (11%)

Query: 1   MTSFSHKKIWEAIDRMAE--RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M+  +  +   A+ R+    + NL    LA   G +     +    G   +      +++
Sbjct: 13  MSILTPSR--YALLRLIAGAQSNLKAESLA--LGRNHAYLQQYIHKGTPQKLPEDVRDAL 68

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----------SGV 108
            +  A +       +D  +          +       P +                  G 
Sbjct: 69  ARRFAVSPNVFRDDMDPNWEPLDPPPFPPRPRRQRPRPSALEPARQGRHSFAGERGGPGA 128

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
            P+         P         +              +    SM P Y+ G+ +++++A 
Sbjct: 129 LPSNMAVEDGPQPVDHWFLPRRFLGAFTDSPEALVVLRVAGDSMEPDYQAGERVLVDTAH 188

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGR----SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      + +      +V K L    G     S+ +MS+N  YP  T  + ++    R++
Sbjct: 189 RTPSPPGVYVLWDGFGLVLKRLEIVYGSEDPVSVQIMSINPGYPTYTRALDEVHINGRVV 248

Query: 220 --WA 221
             W 
Sbjct: 249 GKWV 252


>gi|319782474|ref|YP_004141950.1| peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168362|gb|ADV11900.1| Peptidase S24/S26A/S26B, conserved region [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 234

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 58/222 (26%), Gaps = 17/222 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+  AI +  ++  L    +A     D  +    +          P TE++ K  A    
Sbjct: 12  KVGAAIRKARKQRGLVMRHIAEHNDTDVAAVGNWETGRN-----LPKTENLLKTAAFLRV 66

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEI 123
               L                   +    P  +       +       +        P  
Sbjct: 67  DPVALGQGQVVFLDDAGPVADAEIVTDAGPLPASSMDIEVLGAAVGGDDGDFTFNGEPAG 126

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD---- 179
                       +         SM+P Y  GD++          GD ++I+    +    
Sbjct: 127 YVQRPPGVRNLPKVFALHVLSDSMVPRYEPGDLIYCG-GRDAVPGDHVVIETFPEENERN 185

Query: 180 --IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                K L+ R    + +   N      T     I+ + R++
Sbjct: 186 GKAFIKKLVKRTAGELVVEQYNP-PKTLTFNRYAIKHVWRVI 226


>gi|328944041|ref|ZP_08241506.1| LexA repressor [Atopobium vaginae DSM 15829]
 gi|327492010|gb|EGF23784.1| LexA repressor [Atopobium vaginae DSM 15829]
          Length = 214

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 60/229 (26%), Gaps = 35/229 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR-----N 50
           M       ++I+  +      H   PS   +    GL  P++ +       +        
Sbjct: 1   MRKLGKRQEQIYSYLCSYVSEHGYPPSVREIGEAVGLASPSTVHMHLHALQDLGYIHRDP 60

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           + P    + K++    E               + + +     +   P          +  
Sbjct: 61  KKPRALVLPKLVQDEGEQH-------------SVENDNVELNVTILPVVGRVAAGVPILA 107

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
             N  + + VP   S  +            K Q  SM+      GD +++        G+
Sbjct: 108 EQNIEDRLAVPTSISSDSSS-------FILKVQGESMINAGIFDGDYVVVKEQHDARNGE 160

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            ++      +   K         I L   N        +      I ++
Sbjct: 161 IVIAMID-NECTVKRFFKES-SYIRLQPENDTMKPIIAKHP--TIIGKV 205


>gi|51245882|ref|YP_065766.1| repressor protein [Desulfotalea psychrophila LSv54]
 gi|50876919|emb|CAG36759.1| related to repressor protein [Desulfotalea psychrophila LSv54]
          Length = 236

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 32/238 (13%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGL-ARKAGLDPTSFNKSKRFGIEGRNRWPST------ 55
                    A+     +     S L A+  G+      + K+   +G             
Sbjct: 1   MLKQTTFSAALVYCLSKKGYGASSLCAKSTGISSGYLTELKKAKKKGSEEQRRLLALYFE 60

Query: 56  ----------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                     E I      T     ++L     +   T K  K+IPLL +  +       
Sbjct: 61  MSYEDFLAAGEQILAGKNPTELISTKILKKRVKNLGITHKSIKKIPLLSWTEAAEWSTTL 120

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
                       + V         I          K    SM P +  GDI+I++  I  
Sbjct: 121 KNTLSA-TINEWITV---------ICKAGKTAFALKVMCQSMEPEFCPGDIIIVDPEIAP 170

Query: 166 NCGDRLLIKPRTG----DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G  ++ +        +   K      G  + L+SLN  Y    V  ++ +    ++
Sbjct: 171 ETGRFVIAQLDGQSSGSEATLKRFERDGGD-LYLVSLNDKYGDKNVTDTNFKICGCVV 227


>gi|293404030|ref|ZP_06648024.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298379809|ref|ZP_06989414.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|291428616|gb|EFF01641.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298279507|gb|EFI21015.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|323972432|gb|EGB67639.1| peptidase S24 [Escherichia coli TA007]
          Length = 215

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 17/210 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD-----LPFSD 79
           + LA   G+D  + ++ +     G+ +  + +++  I  +    I  L            
Sbjct: 4   ADLAEAIGVDAANISRLE----TGKQKQFTEQTLSNIAKSLGVDIADLFTSALKSNTVYK 59

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136
               E   +   +             +G+   G+  + +   E R+ +            
Sbjct: 60  NSNNEDVAQVKDVFRIEMLDISASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +  SM P    GD++ ++ +I    GD + +      I  K L       + ++
Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178

Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223
           S N  Y    +            ++L  SQ
Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207


>gi|227811308|ref|NP_777349.3| hypothetical protein IN93_gp32 [Thermus phage IN93]
 gi|227215237|dbj|BAC55311.3| unnamed protein product [Thermus phage IN93]
          Length = 218

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 23/216 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            EAI    ++  LT   L       L   + +  +   +         E    +L+A   
Sbjct: 9   GEAIKARRKQLGLTQEDLEAATNDILSQKTISDLEVGRV--HPLNLGAEKFLALLSALRW 66

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T  +  +    D     +   E                      G+       PE  S  
Sbjct: 67  TPEEFAEATGLDVPLVYRPSGEPREDVVWVPV-----------VGSGVAGRPWPESGSMP 115

Query: 128 NGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVA 182
                ++      + +  SM        R GD+++++     +  G    ++     I  
Sbjct: 116 VPRPLVRPGSVLIQVEGDSMDTGEEDGLRDGDLVLVDQNLKDLREGRVYAVEIIGDGIAI 175

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K       R I L+S N   P   +E  ++  I  +
Sbjct: 176 KRARKLGNRWI-LISDNPKGP--LLEPEEVRVIGEV 208


>gi|262273578|ref|ZP_06051392.1| SOS-response repressor and protease LexA [Grimontia hollisae CIP
           101886]
 gi|262222556|gb|EEY73867.1| SOS-response repressor and protease LexA [Grimontia hollisae CIP
           101886]
          Length = 207

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 69/225 (30%), Gaps = 37/225 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +A++ G                R+   + E
Sbjct: 1   MKPLTARQQQVFDLIKAKIDDTGMPPTRAEIAKELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                 +      +   + +         G    G    G    
Sbjct: 46  HLKALARK-----------GVLEIVPGASRGIRLLVDTEAAKEEEGLPLIGRVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E+    +        D   +    SM  +    GD+L ++   +V  G  ++ + 
Sbjct: 95  AQEHVEMYYQVDPNLFKPNADFLLRVSGMSMKDIGILDGDLLAVHKTQEVRNGQVVVAR- 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIA 216
              D+  K L  +  + + L + N  +    V++S     IE IA
Sbjct: 154 VEDDVTVKRLERKGNQ-VLLHAENEEFAPIVVDLSQQPFTIEGIA 197


>gi|15887791|ref|NP_353472.1| putative phage repressor [Agrobacterium tumefaciens str. C58]
 gi|15155365|gb|AAK86257.1| putative phage repressor [Agrobacterium tumefaciens str. C58]
          Length = 231

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 64/226 (28%), Gaps = 21/226 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KKI +AI     R  L    LA   G+   +    +R          + E +  I    
Sbjct: 7   RKKIGQAIRTARIRRGLVMRDLAEAGGVSTGAVGNWERGAN-----AIAMEHLQAISQKL 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----P 121
                 L +         E       +  F P+ +G      +       +         
Sbjct: 62  RIDPVALSNGSLRYLDEEEALADAEQVTDFGPAPTGPMDVEVLGVAVGGDDGDFTLNGEV 121

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-- 179
                     A   +         SM+P Y  G+++ +    +   GD ++I+    +  
Sbjct: 122 SGYVRRPPGIAHLRKVFALHVLSDSMIPRYDPGELIYVG-GREAVAGDHVVIEMFPDEGA 180

Query: 180 ----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219
                  K L  R   +I     N       ++     I+ + RI+
Sbjct: 181 TVGKAYVKKLKGRTKGAIVCEQYNP---PKELQFDQYAIKNMWRII 223


>gi|152996139|ref|YP_001340974.1| SOS-response transcriptional repressor LexA [Marinomonas sp. MWYL1]
 gi|189046540|sp|A6VX60|LEXA_MARMS RecName: Full=LexA repressor
 gi|150837063|gb|ABR71039.1| SOS-response transcriptional repressor, LexA [Marinomonas sp.
           MWYL1]
          Length = 207

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 53/215 (24%), Gaps = 31/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +     + E I          P  + +AR+ G    +                + E
Sbjct: 1   MIKLTKRQSDVLETIREFISETGFPPTRAEIARRLGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K L                        +     L        G    G    G    
Sbjct: 45  EHLKALCKKGAIEMLSGASRGIRLVDRASNDDPTDNL--------GLPVIGKVAAGYPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                               D       TSM  +   +GD+L ++    V  G  ++ + 
Sbjct: 97  AQENIASHVNIPANMFSPQADYFLSVSGTSMKDIGIMEGDLLAVHKTTTVRNGQIVVARI 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              ++  K    ++G  + L+  N  +    V++ 
Sbjct: 157 -GDEVTVKRF-EQKGSIVRLIPENEEFNDIIVDLE 189


>gi|238918201|ref|YP_002931715.1| LexA repressor [Edwardsiella ictaluri 93-146]
 gi|259494473|sp|C5B718|LEXA_EDWI9 RecName: Full=LexA repressor
 gi|238867769|gb|ACR67480.1| repressor LexA, putative [Edwardsiella ictaluri 93-146]
          Length = 202

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I    E+  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQQVYDLIRDHIEQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +            E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALQRKGVIEIVSGASRGIRLLMEDETGLPLVGQVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGFYQIDPSLFKPGADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  NC +    V++ +
Sbjct: 150 -EDEVTVKRLKKQ-GNMVQLLPENCDFQPIVVDLRE 183


>gi|104782433|ref|YP_608931.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila
           L48]
 gi|95111420|emb|CAK16140.1| putative transcriptional regulator, Cro/CI family [Pseudomonas
           entomophila L48]
          Length = 229

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 12/218 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   E + R    HNL    LA + G+         R       R P+ E++ + L    
Sbjct: 13  ENWIEFLSRYKREHNLKQYQLAERLGMTQGGLGHWLRGT-----RRPTLETVNEKLEQLG 67

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-S 125
               +   +         ++     +       +                   +PE   +
Sbjct: 68  LVYLEARVMVVERDIMAREERGVYAVERPLSVNAMRHASFRFPVLSWADLQGALPESSET 127

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                Y           ++ SM         +G ++++++ I+V  G  ++ +      V
Sbjct: 128 QELTGYMPAGNAFWLPVENDSMNAASGRSLPQGVLVLVDAGIEVAPGRLVVARQPGKPAV 187

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            + LI   G+   L  LN  YP   +     E++  ++
Sbjct: 188 LRELIEEGGQR-MLRPLNTLYPT-VLCEEGCEFLGVVV 223


>gi|225026221|ref|ZP_03715413.1| hypothetical protein EUBHAL_00462 [Eubacterium hallii DSM 3353]
 gi|224956472|gb|EEG37681.1| hypothetical protein EUBHAL_00462 [Eubacterium hallii DSM 3353]
          Length = 243

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 27/232 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKA---GLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAA 64
            E +    ++   + S L       G+  T+   +K +    E       T  + ++L  
Sbjct: 5   GEILAENRKKKGYSQSDLVDLLSQEGIQVTTKAISKWETNAREPALHVFLT--LCQLLDI 62

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLY----------------FPPSGSGGFFDSGV 108
            +       + P++      ++ +   + +                  P           
Sbjct: 63  EDIYESFFGENPYNIMSGLNEEGRNKLIEFADILKASKKFSPLSAKIIPFHHPVEITWEP 122

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              G   N +      +   G  A +  D   +    SM PLY  GD+  +     +  G
Sbjct: 123 VSAGTG-NYLEDSVKETYDVGHLAPEQTDFGVRISGDSMEPLYHTGDVAWIQKIDSLANG 181

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWIARIL 219
           +  +     G+   K L       + L+SLN  Y     +E    +   +++
Sbjct: 182 EIGI-FYLNGNTYIKELHDEPDG-VYLISLNQKYRPIQVLESDSFKIFGKVI 231


>gi|240141185|ref|YP_002965665.1| putative phage repressor [Methylobacterium extorquens AM1]
 gi|240011162|gb|ACS42388.1| putative phage repressor [Methylobacterium extorquens AM1]
          Length = 212

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 57/213 (26%), Gaps = 30/213 (14%)

Query: 31  AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90
            G+    F K +R       R     +    +  +                T    +   
Sbjct: 1   MGVSRGQFIKLERGERGLTERTIGLAARAFSVPPSRVIGEGSSAEGERHTTTPPLPQPNA 60

Query: 91  PLLYFPPSGSGGFFD----------------SGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
            +     +     F                       G   +    P          A +
Sbjct: 61  AIPDQAEAVDPSVFRGPRNVPVYGTGSGGDGGDFSFNGQLIDHAPRPPGI-------ANR 113

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR------TGDIVAKVLISR 188
                      S+ P Y  G  + ++   +    D ++++ R       G    K L+SR
Sbjct: 114 KDVYVVYLVGDSVAPAYEDGSPIYVDPHRRPAPRDYVVVELRGEREGEPGPAFVKRLVSR 173

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220
            G  + L   N    ++ ++ +D+  + R++ W
Sbjct: 174 GGGKLRLEQHNPPKQLEPIDEADVVRVHRVIPW 206


>gi|6729334|dbj|BAA89781.1| repressor protein [Enterobacteria phage VT2-Sakai]
          Length = 191

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 50/197 (25%), Gaps = 19/197 (9%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           +         R      +R PS   I  +                               
Sbjct: 1   MTQGGIGHWLRG-----SRHPSLSDIGVVFKYLGIDNISFNHDGTFSPVGEYSSAPVKKQ 55

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML---- 148
             +P             P    +       + S               + +  SM     
Sbjct: 56  YEYPVFSHVQAGM--FSPELRTFTKGDAERLVSTTKKA---SDSAFWLEVEGNSMTAPTG 110

Query: 149 --PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
             P +  G +++++    V  GD  + +    +   K LI   G+   L  LN  YP+  
Sbjct: 111 SKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIP 169

Query: 207 VEMSDIEWIARILWASQ 223
                   + +++ ASQ
Sbjct: 170 CN-ESCSVVGKVI-ASQ 184


>gi|194432334|ref|ZP_03064622.1| LexA repressor [Shigella dysenteriae 1012]
 gi|194419537|gb|EDX35618.1| LexA repressor [Shigella dysenteriae 1012]
 gi|332084337|gb|EGI89540.1| lexA repressor [Shigella dysenteriae 155-74]
          Length = 202

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 60/216 (27%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E              D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVAPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|330987826|gb|EGH85929.1| repressor protein cI [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 250

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 38/238 (15%)

Query: 11  EAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-------------NRWP 53
            A+  +     +   LT    A   G++  SF+                           
Sbjct: 15  AALKAIFMEKRKALGLTQEKAAEALGMNQGSFSHYLNGRNALNTPFAVQVAHLLQVPVEA 74

Query: 54  STESIFKILAAT----------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            +  + K++              +   +             +  +  PL+ +  +G+   
Sbjct: 75  FSPRLAKLIHMMTKAVSGEGLAEKHQGEREGSNVEPVTQPWRAPRRYPLISWVAAGARAE 134

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
             +GVFP  +    +   E          ++           S  P + +G  +++    
Sbjct: 135 SPAGVFPASS-EEYIASTENAGEAGYWLEVKGASM-----TASTNPSFPEGTRILVQPEG 188

Query: 164 -QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
             +  G   + +   G+   K  +        L  LN  +   TV M D    I R++
Sbjct: 189 FDLVNGKFYIAQHVDGETTFKQYV-HDAGWEYLAPLNPAF--RTVNMDDSWVLIGRVI 243


>gi|146299728|ref|YP_001194319.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146154146|gb|ABQ05000.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
           UW101]
          Length = 257

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 16/216 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I  +  +H ++   LA    +    + K +    E        + + KI    + +I 
Sbjct: 6   DNIRALRVKHKISQEKLAENLSITRGRYVKYEDGTSEA-----PYDILKKIALYFHMSID 60

Query: 71  -----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEI 123
                 +  +   +    E     +P+       +     S     G  N +      E 
Sbjct: 61  LILSVDIRKIDVQNLIKLEGNRLILPIQVDSFGENYIEIVSQKAKAGYLNGYADPEYIES 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDI 180
                  +    +      +  SM P    G I+I   +    +V  G   ++  +   +
Sbjct: 121 LQQITLPFLGPGKHRGFPVEGDSMPPH-EDGSIIIGRYVEKLGEVMDGKTYILITKNEGM 179

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           V K L   +  ++ L S N  YP   V+ SDI  I 
Sbjct: 180 VYKRLNKNKKNALVLESDNSFYPNYEVKASDILEIW 215


>gi|289679295|ref|ZP_06500185.1| transcriptional repressor pyocin R2_PP [Pseudomonas syringae pv.
           syringae FF5]
          Length = 244

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 24/205 (11%)

Query: 32  GLDPTS--FNKSKRFGIEG--------------RNRWPSTESIFKILAATNETICQLLDL 75
           G+  T+   +K                      R  W     + K               
Sbjct: 41  GVHKTTQAVSKWLNGEAIAEADSMMALCAWLKVRREWLEYGVLPK-APGLETYEEAGSVK 99

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
             +    ++   +   +       +G + ++  F   +  + +  P   S +     ++ 
Sbjct: 100 SEAAENVSKIPLRFGKVPLISWVQAGAWCEAANFDPYDNEDWISCPVPISKNGFALKVRG 159

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSID 194
               ++    S    Y  G I+ ++  I+ N GDR++ + PRT ++  KVL+   GR   
Sbjct: 160 DSMTNQGSGRS----YPAGCIIFVDPDIEANPGDRVIARVPRTDEMTFKVLVEDAGRQF- 214

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L  +N  YP+  +   +     +++
Sbjct: 215 LRPINPQYPIIDIT-EETYICGKVI 238


>gi|330953440|gb|EGH53700.1| LexA repressor [Pseudomonas syringae Cit 7]
          Length = 202

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 55/216 (25%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                       +               +  + +     P                   +
Sbjct: 45  ---------KHIVALTEAGLIEVVAHQARGIRLLNSEPLPELLEIPVLGRVAAGAPIGPD 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                 +    +    +   D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 96  LDIHSTLHLDRSTFTRVP--DYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R    + L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLQRR-AEQVRLLPRNPAYEPIIVTPDQ 187


>gi|332533269|ref|ZP_08409136.1| SOS-response repressor and protease LexA [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037348|gb|EGI73803.1| SOS-response repressor and protease LexA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 205

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 35/215 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I    +   + P  + +A+  G    +                + E
Sbjct: 1   MRPLTNRQAQILELIKVFIKDTGMPPTRAEIAQTLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA       +            ++ E+             G    G    G+   
Sbjct: 45  EHLKALAKKGAIKMKPGASRGIQLIEEDEPEQL------------GLPLIGRVAAGSPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     + +      D   +    SM  +    GD+L ++       G  ++ + 
Sbjct: 93  AQEHVESHCKIDPLMFKPAADFLLRVNGMSMKDIGIMDGDLLAVHRTQTAENGQVVVARL 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + GR + L + N  +    V++ 
Sbjct: 153 D-EDVTVKRL-EKAGRKVLLHAENDDFDSIEVDLE 185


>gi|255036105|ref|YP_003086726.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
           18053]
 gi|254948861|gb|ACT93561.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
           18053]
          Length = 279

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 63/229 (27%), Gaps = 25/229 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I  + ER  LT    A + G+        +     GR   PS   + KI      +I
Sbjct: 9   GSNIRFLRERRRLTQEDFAEQLGVTRVKLAAIE----AGRTENPSAVDLIKISDFFGLSI 64

Query: 70  CQLLDLP------------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             L  +              +      K      L       +    +         + +
Sbjct: 65  DNLFRIDLRGVGELPLRELEAGSPLYMKGTNLRVLAISTDKANKENVEYVPVKAKAGYRS 124

Query: 118 VGVPEIRSPHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDR 170
                        +++             T   SMLP+    D++   +     +  G  
Sbjct: 125 GYANPEFIASLPKFSVPGLPQTGTFRMFPTTGDSMLPVPEGADVICRYVEDWTALKPGTL 184

Query: 171 -LLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            ++I     D V K +     G  + L SLN  Y    +   D+  I +
Sbjct: 185 CIVILDGEQDFVFKKVTILPEGNKMRLESLNRAYEPYEISAGDVLEIWK 233


>gi|330867023|gb|EGH01732.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 202

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 45  --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLELPVLGRV-----AAGAPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 98  IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L     + + L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 187


>gi|320105069|ref|YP_004180660.1| SOS-response transcriptional repressor, LexA [Isosphaera pallida
           ATCC 43644]
 gi|319752351|gb|ADV64111.1| SOS-response transcriptional repressor, LexA [Isosphaera pallida
           ATCC 43644]
          Length = 201

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 45/181 (24%), Gaps = 7/181 (3%)

Query: 40  KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
           K +R G     R    +   K        +  L         T   +  ++      P  
Sbjct: 21  KIQRRGYGPTVREIGQQFDIKSPNGVMCHLKALQKKGLIHRETNMARAIQLLDDPTTP-E 79

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILI 158
             G    G    G     V   E  +  +   A        +    SM       GD +I
Sbjct: 80  PVGIPLRGRIAAGQPIEAVEQEEFLAVQDWQLA--GDKFALQVSGDSMIEEHIADGDYVI 137

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +        G  + +     ++  K     +     L   N  Y         +E +  +
Sbjct: 138 IKQQKVARDGQIVAVADGDNEVTLKRFFKEKN-RYRLEPANKNYKPIY--RDHVEILGVL 194

Query: 219 L 219
           +
Sbjct: 195 V 195


>gi|257487771|ref|ZP_05641812.1| LexA repressor [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289627967|ref|ZP_06460921.1| LexA repressor [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649729|ref|ZP_06481072.1| LexA repressor [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 205

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 4   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 48  --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLELPVLGRV-----AAGAPIGPDLD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L     + + L+  N  Y    V    
Sbjct: 157 D-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 190


>gi|294634335|ref|ZP_06712873.1| repressor LexA [Edwardsiella tarda ATCC 23685]
 gi|291092232|gb|EFE24793.1| repressor LexA [Edwardsiella tarda ATCC 23685]
          Length = 202

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I    E+  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQQVYDLIRDHIEQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +            E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALQRKGVIEIVSGASRGIRLLMEDESGLPLIGQVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGYYQVDPSLFKPNADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 -EDEVTVKRLKKQ-GNVVQLLPENSDFQPIVVDLRE 183


>gi|2293118|gb|AAB68649.1| LexA [unidentified cloning vector]
          Length = 230

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|330974540|gb|EGH74606.1| repressor protein c2 [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 234

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 28/237 (11%)

Query: 3   SFSHKKIWEA----IDRMAERHNLTPSG----LARKAGLDPTSFNKSKRFGIEGRNRWPS 54
               +++  A    + +    +++ P G    L++  G+ P + +K            P 
Sbjct: 1   MVQIEELRAAFATRLKKALAENHVEPWGAGVRLSKMTGVTPKAASKWLNGEAI-----PG 55

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP--SGSGGFFDSGVFPTG 112
              +  +  A N  +  L +       +      E+  +      S    +        G
Sbjct: 56  PAKMRALSEALNTPLGWLQNGAEGLPVSGHPVSIELSNVSEVEQSSRMYRYPVVSSVAAG 115

Query: 113 NKWNTVGVPEIRSPHNGI---YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQV 165
                V               Y  + +    +    SM         +G ++++++ ++ 
Sbjct: 116 AWAEAVEPHPNGFSDRYEVSDYKAKGKAFWLEVVGDSMTAPAGTSVPEGMLILVDTGVEA 175

Query: 166 NCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RI 218
             G  ++   P + D   K LI      + L  LN  Y +      D + I    R+
Sbjct: 176 RPGKLVVAKLPSSNDATFKKLI-DDAGQLYLKPLNPGYSMIKCT-DDCKIIGVAVRV 230


>gi|225871051|ref|YP_002746998.1| phage repressor protein [Streptococcus equi subsp. equi 4047]
 gi|225700455|emb|CAW94865.1| putative phage repressor protein [Streptococcus equi subsp. equi
           4047]
          Length = 262

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 59/236 (25%), Gaps = 39/236 (16%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           +    N     L++  G+ P++     +         P   ++ KI          +   
Sbjct: 26  LLNETNTKQVELSKATGIPPSTLTGYVKGTS-----LPIPGNVQKIADYFGLMKSDIDPR 80

Query: 76  PFSDGRTTE-------------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                +  E                      ++  +L F         +         + 
Sbjct: 81  FAPRKKNHELKIPTSPLVKKITTTVVELNVPRKQKVLDFATDQLKEQKNKMTSMEKKLYE 140

Query: 117 TVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                ++ +     Y                 D        SM P Y  G+++++     
Sbjct: 141 YKVYEKLSAGTGYGYFGDGNYDTVFYEEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGF 200

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
              G  +      G    K +   +   + L+SLN  Y         D   I +I+
Sbjct: 201 DYEG-GVYAVEWDGQTYIKKVYREKDG-LRLVSLNKKYKDKFAPFSEDPRIIGKIV 254


>gi|218132379|ref|ZP_03461183.1| hypothetical protein BACPEC_00238 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992717|gb|EEC58719.1| hypothetical protein BACPEC_00238 [Bacteroides pectinophilus ATCC
           43243]
          Length = 232

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 21/230 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNR-WPSTESIFKIL 62
           + E I    ++  ++   L+   G     L   + +  ++   E           +  I 
Sbjct: 4   LGEIISTHRKKLGISQVELSNMLGTHGYSLTNKAISTWEKDAAEPSISVLLLLCKLLNIT 63

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               E   +  D P +D     + + +  +     SG      + + P         +P 
Sbjct: 64  DIYGEHYGENPDNPLADLNEEGQAKAKEYIELLKMSGMYTPTPAVIIPFRRNIRLFDIPA 123

Query: 123 IRSPHNGI----YAI--------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                + +    Y+I           D   +    SM P +  G I+ ++    ++ G+ 
Sbjct: 124 SAGTGSFLDGENYSILEVGEEVPAEADFGIRISGDSMEPQFINGQIVWVHQQETLSTGEI 183

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            +     G+   K L       + L+SLN  Y    + E S  +   +++
Sbjct: 184 GIFYFD-GNAYCKKL-KDDEDGLFLLSLNTRYEPIPIKETSSFKVFGKVV 231


>gi|317969088|ref|ZP_07970478.1| SOS-response transcriptional repressor LexA [Synechococcus sp.
           CB0205]
          Length = 208

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 7/190 (3%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL-DLPFSDGRTTEKKEKEIPLL 93
                      I      PS   + + +   +    Q         G  T K+ +   L 
Sbjct: 15  QQELYDWLSQYIGEHRHSPSIRQMMEAMGLRSPAPIQSRLRHLQQKGWITWKEGQARTLQ 74

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YR 152
               +  GG    G    G    T    E R     + A +           SM+     
Sbjct: 75  LLGDALGGGIPVLGAVAAGGLVETFDDVEERLELEPVLATRG-LFALTVNGDSMVDAHIA 133

Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            GD++++    +      G  +           K      GR + L + N  Y    ++ 
Sbjct: 134 DGDVVLMEPVSEPSRLREGTIVSALVPGSGTTLKHFHRD-GRQVRLEAANPAYEPILIDA 192

Query: 210 SDIEWIARIL 219
             +    +++
Sbjct: 193 DQVAIQGKLV 202


>gi|332308547|ref|YP_004436398.1| transcriptional repressor, LexA family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175876|gb|AEE25130.1| transcriptional repressor, LexA family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 207

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 33/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I        + P  + +AR  G        +    ++   R  + E
Sbjct: 1   MRPLTPRQEEVLQLIKTTMLDTGMPPTRAEIARHLGFKSA---NAAEEHLKALARKGAIE 57

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +                           +   +           G    G    G    
Sbjct: 58  IL-----------------------PGTSRGIRLTEPLEDQLEDQGLPLIGRVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E+    +      + D   +    SM  +    GD+L ++    V+ G  ++ + 
Sbjct: 95  AQEHVEMHYKVDPSLFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTTDVHNGQVVVARV 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + GR + L + N  +    V+++
Sbjct: 155 D-EDVTVKRLERK-GRQVVLHAENDDFQPIKVDLA 187


>gi|319937230|ref|ZP_08011637.1| hypothetical protein HMPREF9488_02472 [Coprobacillus sp. 29_1]
 gi|319807596|gb|EFW04189.1| hypothetical protein HMPREF9488_02472 [Coprobacillus sp. 29_1]
          Length = 198

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 66/218 (30%), Gaps = 33/218 (15%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I     RH LT   +A + G+  ++ ++       G  +    E++ ++ A    
Sbjct: 2   ELKDIIKDYKYRHQLTNDEIAAQLGVTKSTVSRWI----SGDVKRIQEETLSRLNALLGY 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            I  ++       +       +     +                      V   +     
Sbjct: 58  NIDPIIKGKSVHLKRPILGYAKAGYDMYAQENYM------------GDEEVTEEDFY--- 102

Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                    D   + Q  SM+      GD+ ++     V+ G+  ++     ++  K +I
Sbjct: 103 -------KGDYFLQIQGDSMIGSGIMDGDLALIKQCSTVSSGEIAVVMIGDDEVTVKKVI 155

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219
            +    + L + N           +     I  I +++
Sbjct: 156 KKPD-MLVLEATNPLTENRYFSQQEIQQLPIRIIGKVI 192


>gi|301300653|ref|ZP_07206842.1| peptidase S24-like protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851761|gb|EFK79456.1| peptidase S24-like protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 258

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 42/247 (17%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   ++ + +        + R+ G+  ++     +       R PS  ++ K+    N  
Sbjct: 17  ISATLNELLQLSGKKQIDITRQTGIPASTLTGYFKGT-----RLPSPVNVQKLADFFNVL 71

Query: 69  ICQLLDLP-------------------------------FSDGRTTEKKEKEIPLLYFPP 97
              +                                          + ++++   ++   
Sbjct: 72  KSDVDPRFKKISESDTDGLRIRLLSKYEKLNTENKKKVVDYADNKLKDQKRQQNKIHPIN 131

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                ++   +             E              D   +    SM P +  G I+
Sbjct: 132 ENDNTYYVDVLGSVSAGTGEWLTDEQHEEVMVNNEPPAHDFALRVNGDSMTPTFSDGQII 191

Query: 158 ILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEM-SDI 212
            +N      +V     ++     G+   K ++    R    L+SLN  Y    V    D 
Sbjct: 192 YVNKIYDTDEVRNNQFVI-AELNGNSYVKKIVFDNNRKDCQLISLNKEYNPINVTKDDDF 250

Query: 213 EWIARIL 219
           + +  ++
Sbjct: 251 KIVGLVV 257


>gi|327198274|ref|YP_004306849.1| gp5 [Burkholderia phage KS14]
 gi|310657237|gb|ADP02350.1| gp5 [Burkholderia phage KS14]
          Length = 235

 Score = 75.6 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 21/222 (9%)

Query: 8   KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +I   +DRM E   + +   LA   G   +S    K      R+R P  E +        
Sbjct: 7   RIQGIVDRMKEVVGVKSDVDLAEAIGASRSSPAVWK-----IRDRMPLAECVSLAEKEGV 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT----GNKWNTVGVPE 122
                +L          E+    I +      GS     +   P         +T+ +P 
Sbjct: 62  SLDWLVLGRGTPGIEEPEQNLNPIAMPDIEGGGSYVELPAFEMPAFIEGETAQSTIRLPR 121

Query: 123 IRSPHNGIYAIQT---------QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                  +  ++          +    +    SM      GD+++++   +    D + +
Sbjct: 122 AWLEPEALGIVEGVNDSSFAPMETIAMRVPGNSMATTINNGDVVLVDR--RPRDVDGVYV 179

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
                 I  + +    G  + L++ N  Y  + +    ++ +
Sbjct: 180 LRMGDSIRLRRVQRMHGGELHLLTDNPAYKSEIISAEQVDAV 221


>gi|15674725|ref|NP_268899.1| putative cI-like repressor [Streptococcus pyogenes M1 GAS]
 gi|94992052|ref|YP_600151.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096]
 gi|13621848|gb|AAK33620.1| putative cI-like repressor, phage associated [Streptococcus
           pyogenes M1 GAS]
 gi|94545560|gb|ABF35607.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096]
          Length = 253

 Score = 75.6 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---------GRNRWP 53
             ++ +I   I    E   ++ S LAR  G+  ++ ++      E          +    
Sbjct: 1   MRTNSEIISLIQSKVEERKMSMSELARNVGIAKSTMSRYFNKTREFPLNRADDFAKALNI 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           STE +  I   +     +LL +             +              F        +
Sbjct: 61  STEFLLGIDLNSEVDGSELLGIYRELEEQRRVIVLDTAKEQLEEQTKIINFSDKKTDIED 120

Query: 114 KWNT--VGVPEIRSPHNGIYAI--------------QTQDTRHKTQDTSMLPLYRKGDIL 157
            +           S     +                   D     +  SMLP Y +GD+L
Sbjct: 121 IFEVKGTTFAAAASGFGRGFEADDYDTYTVYTDEEPPHYDYAIGIRGDSMLPKYEQGDML 180

Query: 158 -ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIE 213
            I++  +    G   ++    G+   K + +     + L+SLN  Y    +      D  
Sbjct: 181 YIVDKGMSTYSGQLCIVVHN-GNTYFKKVYTEHDG-LRLVSLNKKYSDIFIGYPPAEDTY 238

Query: 214 W 214
            
Sbjct: 239 I 239


>gi|256378025|ref|YP_003101685.1| LexA repressor [Actinosynnema mirum DSM 43827]
 gi|255922328|gb|ACU37839.1| SOS-response transcriptional repressor, LexA [Actinosynnema mirum
           DSM 43827]
          Length = 219

 Score = 75.6 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 54/217 (24%), Gaps = 28/217 (12%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I E I     RH   P    +    GL  TS                S       L 
Sbjct: 22  QRRILEVIQDSVRRHGYAPGAREIGDAVGLRSTS----------------SVSRHLAALE 65

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                          D R   + E+             G         G         + 
Sbjct: 66  EHGFLRRGASVSRPVDVRLFLRPERRAESGDAVAVPVVG-----HIAAGAPIAAEEHVDD 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +     +      + +  SM+      GDI+++    + + G  +       +   
Sbjct: 121 VLTLSRDLTGRGTVFALRVRGDSMVDAAICDGDIVVVRQQHEAHSGQIVAAMID-DEATV 179

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +  RRG  + L   N  Y     +      +  ++
Sbjct: 180 K-VYRRRGGHVVLEPRNKAYADI--DGDGAAILGVVV 213


>gi|270308887|ref|YP_003330945.1| LexA repressor [Dehalococcoides sp. VS]
 gi|270154779|gb|ACZ62617.1| LexA repressor [Dehalococcoides sp. VS]
          Length = 214

 Score = 75.6 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 59/213 (27%), Gaps = 23/213 (10%)

Query: 11  EAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + I R   R+   PS   +     +  TS                + + + K+     + 
Sbjct: 14  DFIARFRRRYGYPPSIRDIVNGCNISSTSVVDY------------NLKILQKMGLIRRQA 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                        T E +     +            +S  F        + V E  +   
Sbjct: 62  EISRGIELVGTEETEEGRISIPVIGQIAAGIPIPVPESDSFAVVTSDENIEVTEDLTRGR 121

Query: 129 GIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLI 186
                       + +  SM   L   GD++I+     V+ G+   +      ++  K + 
Sbjct: 122 ------ENIYALRVKGVSMIEDLINDGDLVIMQHTQTVDNGETAAVWLKDQKEVTLKKVY 175

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 + L   N   P    +  ++E   R++
Sbjct: 176 -MEPGRVRLQPANRTMPPIYTQPDNVEIQGRVI 207


>gi|260655665|ref|ZP_05861138.1| toxin-antitoxin system, antitoxin component, Xre family
           [Jonquetella anthropi E3_33 E1]
 gi|260629582|gb|EEX47776.1| toxin-antitoxin system, antitoxin component, Xre family
           [Jonquetella anthropi E3_33 E1]
          Length = 247

 Score = 75.6 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 42/240 (17%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL------- 62
              I  + ++  ++   LA    +        +          P   +I +         
Sbjct: 9   GANIRELRKKRGISARVLAEAVNISTPFVYDIENGRT--LPSVPVLNAIAQYFGVTTDYL 66

Query: 63  -------------AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                          T  +  +    P           + +PLL    +   G   S   
Sbjct: 67  MGLDEPGAPSSADKQTAASDNEAASYPNDPRVIPLTNCRRVPLLSPEATAHCGGGCSFFE 126

Query: 110 PTGNKWNTV-----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
            T +    +      +          +A+ ++    ++           GD L++N A++
Sbjct: 127 ITSDSTEFIICTPDELGSPIDDLRPPFAVSSEGNCLQSSG------ISDGDKLVVNPAVE 180

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-----EWIARIL 219
           V   +  +I  R   + AK +   +   I+L S N    V  V   D+     E   +++
Sbjct: 181 VRDFNVCVICWR-DHLSAKRIRKLQNGDIELRSDNG---VAVVPADDVENGLFEIWGKVI 236


>gi|187939816|gb|ACD38956.1| hypothetical protein PACL_0716 [Pseudomonas aeruginosa]
          Length = 251

 Score = 75.6 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 62/246 (25%), Gaps = 26/246 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +  +   A+  +AE+   T    A +   +PT  ++                 I +
Sbjct: 1   MIDITTIRRANAL-TLAEKEGGTV-AFAARIDREPTQVSRLIGSNPTKNIGNKLARHIEE 58

Query: 61  ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      Q              + +    L    + S G   +        ++ V 
Sbjct: 59  KFNMPRGWLDIQHTPEQHQRVAEPTAEYRSGGNLESLSAWSDGDPLAPDEVEIPYFDEVE 118

Query: 120 VPEIRSPHNG-----------------IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162
           +                              ++          SM PL   G I+ ++ +
Sbjct: 119 IAAGGGRVPDLELAKRKIRFPKATLREAAVDKSTSVCVNVTGNSMEPLIADGSIIGVDLS 178

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMS-----DIEWIA 216
           +       +        +  K +    G  I L S N   YP +          DI  I 
Sbjct: 179 VNTIVDGEIYALKHDDLLRVKFVYRLPGGGIRLRSYNREEYPDEEYTRDQMRAGDISVIG 238

Query: 217 RILWAS 222
            + W S
Sbjct: 239 WVFWWS 244


>gi|260599564|ref|YP_003212135.1| LexA repressor [Cronobacter turicensis z3032]
 gi|260218741|emb|CBA34089.1| LexA repressor [Cronobacter turicensis z3032]
          Length = 202

 Score = 75.6 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVLEIVSGASRGIRLLQEEETGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPGLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNIVELLPENNEFKPIVVDLRE 183


>gi|218780148|ref|YP_002431466.1| phage repressor [Desulfatibacillum alkenivorans AK-01]
 gi|218761532|gb|ACL03998.1| putative phage repressor [Desulfatibacillum alkenivorans AK-01]
          Length = 230

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 12/219 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +W+++ + A +     + LAR+ G+     N  K+       +    +++ + L A +  
Sbjct: 13  LWKSVWKQARQRGWIMAELARRTGISAQHLNAIKKGE-----KGMGEKTLNRFLKALDMD 67

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +LL    +      +         F          SG   + +  + V          
Sbjct: 68  VEELLAQGAAPRPEGWEGPSGEGRPEFALVPKYKARLSGGPGSLSSSDEVEANFAFRADW 127

Query: 129 GIYAIQTQDTRH-KTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAK 183
                  +     +    SM P+   GD+++++ +      V  G              K
Sbjct: 128 IASKGGGESLALFEVTGDSMYPVICHGDVVLVDQSLSGPEDVISGRP-YALVEGAHTKVK 186

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILWA 221
            L  +              P   ++ S     I R++W 
Sbjct: 187 NLQWQGAELWVHSGKESGEPPYCLDQSAYFRIIGRVIWV 225


>gi|239998667|ref|ZP_04718591.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae 35/02]
 gi|240013800|ref|ZP_04720713.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae DGI18]
 gi|240016241|ref|ZP_04722781.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae FA6140]
 gi|240112585|ref|ZP_04727075.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae MS11]
 gi|240116011|ref|ZP_04730073.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae PID18]
 gi|240117625|ref|ZP_04731687.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae PID1]
 gi|240121382|ref|ZP_04734344.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae PID24-1]
 gi|240123183|ref|ZP_04736139.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae PID332]
 gi|240125432|ref|ZP_04738318.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae SK-92-679]
 gi|260440859|ref|ZP_05794675.1| putative lambda repressor protein cI, putative phage associated
           protein [Neisseria gonorrhoeae DGI2]
          Length = 115

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
               +  SM P    GD++ +++A++   GD L +      + AK L S  G  + ++S 
Sbjct: 24  VITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLKAKRLQSTVGGGLMIISD 83

Query: 199 NCCYPVDTVEMSD---IEWIARI 218
           N  Y  +TV   D   +  I RI
Sbjct: 84  NSSYRTETVRGEDLNAVRIIGRI 106


>gi|284006683|emb|CBA71944.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 220

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 28/224 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + + +  + +    T   L +  G+   +    ++   E     P  +++ K+  A N
Sbjct: 6   KTLGQRLKYLRKLKKYTQVTLGKAIGVTGVTVGYWEKDLNE-----PGGKALSKLARALN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T   LL                  +       +  F  +G +          +P     
Sbjct: 61  TTENYLLYGKNPGSVIPINNSNIRFIPLLTWEEAISFTKNGGY---------EMPNQEKV 111

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-- 179
                +   +    +  D +M      P   KG I+ ++   +   G  +          
Sbjct: 112 IPDFVSASPKAFCVRIDDDTMVNPYGEPSIPKGAIITIDPLDEPTNGKIVAAIISDNLSN 171

Query: 180 -----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                ++ K L+     S  LM LN  Y    +     E I  +
Sbjct: 172 PPRSIMMVKKLVIDGLNSY-LMPLNPRYDKILIT-DSCEIIGTV 213


>gi|253991400|ref|YP_003042756.1| LexA repressor [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782850|emb|CAQ86015.1| LexA repressor [Photorhabdus asymbiotica]
          Length = 201

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
           G    G    G         E     +      + D   +    SM  +    GD+L ++
Sbjct: 74  GLPLIGRVAAGEPLLAQEHIESHYQVDPALFKPSADFLLRVSGMSMKDIGIMDGDLLAVH 133

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               V  G  ++ +    ++  K    + G  ++L++ N  +    +++ +
Sbjct: 134 KTQDVRNGQVIVARI-EDEVTVKRF-KQTGNKVELLAENPEFKPIVIDLRE 182


>gi|326575737|gb|EGE25660.1| peptidase S24-like protein [Moraxella catarrhalis CO72]
          Length = 228

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 58/225 (25%), Gaps = 17/225 (7%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  +     + PS  A KA   P    +  +   + + R    + + + L      +  
Sbjct: 2   FLSHLLNAQGVMPSERA-KADQFPKMIRRYSKG--QAKPRNDKMKLLTQCLGVPITWLDY 58

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGVPEIRSPHN-- 128
                  +        +           +   F     F  G+       P         
Sbjct: 59  GEGEMTKNNDKLTPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMG 118

Query: 129 -----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                 +  +          D SM P  + GD + ++   +     R+         + K
Sbjct: 119 RRTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCK 178

Query: 184 VLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
            L       + ++S N   +P        +   + E I  +   S
Sbjct: 179 RLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 223


>gi|157370276|ref|YP_001478265.1| putative phage repressor [Serratia proteamaculans 568]
 gi|157322040|gb|ABV41137.1| putative phage repressor [Serratia proteamaculans 568]
          Length = 214

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 21/225 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + +   E +        L  +          +  ++          R     +  ++ 
Sbjct: 1   MNTTENRRERLKAWFADKTLPANE--------KSYLSQLMTGKASFGER-----AARRLE 47

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                    L D+  +     E     I +L    S   G  +S V        ++   +
Sbjct: 48  TTYGMPAGFLDDVSDARLAQQEVANYRIEVLDVQASAGPGVINSEVV---QTIRSIEYTD 104

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             +         +Q         SM      GD + ++ +     GD + +      +  
Sbjct: 105 EHALQMFGGKQASQVKMITVDGDSMAGTIELGDAIFVDVSKDYFSGDGIYVFLYKNHLHV 164

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA-SQ 223
           K L       + + S N  Y    +       ++ I R+L + SQ
Sbjct: 165 KRLQMLPD-HLLVHSDNAQYSDWVITEENEHKLKVIGRVLLSQSQ 208


>gi|91217490|ref|ZP_01254449.1| hypothetical protein P700755_19772 [Psychroflexus torquis ATCC
           700755]
 gi|91184375|gb|EAS70759.1| hypothetical protein P700755_19772 [Psychroflexus torquis ATCC
           700755]
          Length = 217

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 37/224 (16%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + +   +T +  A K G+   +    ++ G+  +++    E++ K            
Sbjct: 6   VKEVRKALKMTQTEFAEKVGVSKITIISYEKGGVIPKSKSKILENMHKEA---------- 55

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRSPHNGI 130
                        K                      F +G   +     +P+I       
Sbjct: 56  -------FENDTSKASLKDYELIKLVPLVASRVQAGFLSGWGDDEYIGELPKIPWEVEKE 108

Query: 131 YAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQ--------VNCGDRLLIKPRT 177
           +  +      + +  SM            DIL+     +        +N  D ++     
Sbjct: 109 F--KGNYFCFEVEGDSMNNSNPSEAILDKDILLCREIQKHHWKNKLHINSWDFVIAHKDR 166

Query: 178 GDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G IV K +   +     + L SLN  Y   TV + D+  +  ++
Sbjct: 167 G-IVVKRITDQNVEYGKLALHSLNNLYEDYTVNIEDVIALFNVV 209


>gi|282882014|ref|ZP_06290655.1| repressor LexA [Peptoniphilus lacrimalis 315-B]
 gi|281298044|gb|EFA90499.1| repressor LexA [Peptoniphilus lacrimalis 315-B]
          Length = 205

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 55/214 (25%), Gaps = 29/214 (13%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I   I +  ER    P+   + +  G+  TS                   ++ K+   + 
Sbjct: 12  ILFFIKKEIERKGYPPTVREICQGVGIKSTSTVYY---------------ALEKLENKSY 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                            +            P          +    N  +T+ +      
Sbjct: 57  IRKDPSKTRAIEIIDQNDGILTSKKKTIDVPILGKVTAGIPILAVENLEDTMPLSSD--- 113

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               +         K    SM+ +    GD +I+        GD++L      +   K  
Sbjct: 114 ----FVRDRDLFILKVSGESMINVGILDGDYVIIQRTNYAESGDKVLALIN-DEATIKTF 168

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +     L   N       V+  D++ +  I+
Sbjct: 169 YKEKDG-FRLQPENDFMKPIYVK--DLKILGTIV 199


>gi|15988320|pdb|1JHH|A Chain A, Lexa S119a Mutant
 gi|15988321|pdb|1JHH|B Chain B, Lexa S119a Mutant
          Length = 202

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    +M  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMAMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|119943901|ref|YP_941581.1| SOS-response transcriptional repressor, LexA [Psychromonas
           ingrahamii 37]
 gi|166224642|sp|A1SR67|LEXA_PSYIN RecName: Full=LexA repressor
 gi|119862505|gb|ABM01982.1| SOS-response transcriptional repressor, LexA [Psychromonas
           ingrahamii 37]
          Length = 209

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 67/225 (29%), Gaps = 35/225 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ + I     +  + P+   LA+  G        +    ++   R  + E
Sbjct: 1   MKELTKRQNEVLDVIKDQILKTGMPPTRVELAKILGFRSA---NAAEEHLKALARKGAIE 57

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +                       T+          +   +   G    G    G    
Sbjct: 58  ILA---------------------GTSRGIRLLGEHQHNEKAHQDGLPLIGQVAAGEPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   + Q  SM  +    GD+L ++    +  G  ++ + 
Sbjct: 97  AQQHIETYYDVDPALFHPSADFLLRVQGESMKDIGIMDGDLLAVHKTQDIKNGQVVIAR- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
              D+  K      GR + L + N  +    ++++    DIE IA
Sbjct: 156 VEDDVTVKRFYR-EGRQVILKAENNDFGPIKIDLAYQSFDIEGIA 199


>gi|117925371|ref|YP_865988.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp.
           MC-1]
 gi|117609127|gb|ABK44582.1| SOS-response transcriptional repressor, LexA [Magnetococcus sp.
           MC-1]
          Length = 132

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 43/123 (34%), Gaps = 8/123 (6%)

Query: 101 GGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
              F + + P G      + +        +  +          +    SM+      GDI
Sbjct: 4   PIPFFTSLVPAGFPSPADDYLE--GHLDLNELLIKRPAATFFVRVTGDSMIGAGIHSGDI 61

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           L+++ +++   G  ++    +G++  K L  + G  + LM  N  +    +       + 
Sbjct: 62  LVVDRSLEPINGSIVIAV-VSGELTVKRL-KKDGGRVWLMPENKDFQPMEISEEQEMTVW 119

Query: 217 RIL 219
            ++
Sbjct: 120 GVV 122


>gi|313900347|ref|ZP_07833841.1| peptidase S24-like protein [Clostridium sp. HGF2]
 gi|312954896|gb|EFR36570.1| peptidase S24-like protein [Clostridium sp. HGF2]
          Length = 194

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 63/209 (30%), Gaps = 37/209 (17%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
             R +L+   +    G+  ++  + +        +      + ++       +       
Sbjct: 11  RHRDSLSLESVGDFVGVSKSTVKRWESGESSNVPQA----RLDRLSELFGIDV------- 59

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
                    +    P+L +  +G   F +  +      +  V                  
Sbjct: 60  -----PACLQGHVKPILGYVKAGYDLFANENLL----GYEEVS----------AREAAQG 100

Query: 137 DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
           D   + Q  SM       GD++ + S   V  GD  ++     ++  K ++ +   ++ L
Sbjct: 101 DYYLRVQGDSMTGSRIYDGDLVYVKSCSDVENGDIAVVLLNHSEVTIKKILKKE-HTVIL 159

Query: 196 MSLNCCYPVDTVEMSDIE-----WIARIL 219
           M+ N           +IE      I ++L
Sbjct: 160 MATNPVVEPRVFTQEEIEEGQLKIIGKVL 188


>gi|56750016|ref|YP_170717.1| DNA polymerase V [Synechococcus elongatus PCC 6301]
 gi|81300358|ref|YP_400566.1| SOS mutagenesis protein UmuD [Synechococcus elongatus PCC 7942]
 gi|56684975|dbj|BAD78197.1| DNA polymerase V [Synechococcus elongatus PCC 6301]
 gi|81169239|gb|ABB57579.1| UmuD protein. Serine peptidase. MEROPS family S24 [Synechococcus
           elongatus PCC 7942]
          Length = 186

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +   +    +  +          +    SM+ +    GD++I++ +++   G  ++
Sbjct: 77  ADDYIE--QRLDLNRHLIKNPAATFMARVSGDSMIGVGIHDGDVIIVDRSLEPRDGQIVI 134

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  +  + + L + N  YP   +  +    I  ++
Sbjct: 135 AVLN-GELTVKRL-RQERQRLFLQAENPNYPDLEITDASAFQIWGVV 179


>gi|238922409|ref|YP_002935923.1| repressor LexA [Eubacterium eligens ATCC 27750]
 gi|238874081|gb|ACR73789.1| repressor LexA [Eubacterium eligens ATCC 27750]
          Length = 143

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
                     G     V  P+     +     +      +    SM P +  G I  +  
Sbjct: 15  IDIFENAVSAGTGNFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHDGQIAWVLQ 74

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              V  G+  +     G+   K L + +   I L+SLN  Y    V E   ++   ++L
Sbjct: 75  QESVANGEIGIFALN-GEAYIKKLQNDKDG-ISLISLNEKYAPIKVGENDRLDIFGKVL 131


>gi|330968365|gb|EGH68625.1| cI repressor protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 205

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 22/195 (11%)

Query: 48  GRNRWPSTESIFKILAATNETICQ---------LLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           G     + E++ K+    +                    +    TE +E  I       +
Sbjct: 6   GGKLALNLEALIKLSEVLDFEPEDVSPTLGRGITRKTNSTAPGKTESRESFIQRDEGDEN 65

Query: 99  GSGGFFDSGVFPTGNKWN--TVGVPEIRSPHNGIYAI----QTQDTRHKTQDTSMLPLYR 152
            +     + +   G   +   V +    +      A                 SM P   
Sbjct: 66  YAFIPQYTAMAAAGAGHDNPHVEIRSTLAFKKEWLASKGLQPRNLRVIYADGESMWPAIN 125

Query: 153 KGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTV- 207
             D+L+++S+  +       +I+      V K L+    +   L S N     YP     
Sbjct: 126 DQDVLLVDSSQVEPVENGVFVIESGVDGTVVKRLVRAPLQQWILRSDNTDKAKYPDRFYL 185

Query: 208 --EMSDIEWIARILW 220
             E ++ + + R++W
Sbjct: 186 RSESNEHQIVGRVIW 200


>gi|160896773|ref|YP_001562355.1| putative phage repressor [Delftia acidovorans SPH-1]
 gi|160362357|gb|ABX33970.1| putative phage repressor [Delftia acidovorans SPH-1]
          Length = 204

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 53/212 (25%), Gaps = 31/212 (14%)

Query: 27  LARKAG--------LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
           +A   G        + P +    ++ G                         +       
Sbjct: 1   MAEALGPDWMAGMEVQPETVRTWRKRGEVP-------------ARQLLRASQRAGRPLEY 47

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------VPEIRSPHNGIYA 132
              T   K             +           G+                 S       
Sbjct: 48  FNGTGAAKPVARHGGAAEDEFTQIEMLDAHVSAGHGAVNGPDEVIGRFAFRTSWLQSKGL 107

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-RGR 191
            +      + +  SM      GDIL++N+++     D + +    G+   K+L       
Sbjct: 108 GRHNAKIVRARGRSMADRINDGDILLVNTSVDTLTQDGVYVIELEGENYVKLLERDFSTG 167

Query: 192 SIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
            + ++S N  YP   +E      +    R+LW
Sbjct: 168 GVRIVSYNPAYPPQVLEGEAANRLRICGRVLW 199


>gi|13471985|ref|NP_103552.1| phage repressor protein C [Mesorhizobium loti MAFF303099]
 gi|14022730|dbj|BAB49338.1| probable phage repressor protein C [Mesorhizobium loti MAFF303099]
          Length = 234

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 60/223 (26%), Gaps = 19/223 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+  AI +  ++  L    +A     D  +    +          P TE++ K  A    
Sbjct: 12  KVGAAIRQARKQRGLVMRHIAEHNDTDVAAVGNWETGRN-----LPKTENLLKTAAFLRV 66

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-----PE 122
               L                +  ++        G  D  V       +         P 
Sbjct: 67  DPVAL-GKGEVVFLDDADALSDAEIVTDAGPMPAGSMDIEVLGAAVGGDDGDFTFNGEPA 125

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--- 179
                        +         SM+P Y  GD++          GD ++I+    +   
Sbjct: 126 GYVQRPPGVRNLPKVFALHVLSDSMVPRYEPGDLIYCG-GRDAIPGDHVVIETFPEENEK 184

Query: 180 ---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 K L+ R    + +   N      T     I+ + R++
Sbjct: 185 NGKAFVKKLVKRTASELVVEQYNP-PKTLTFNRYAIKHVWRVI 226


>gi|219850095|ref|YP_002464528.1| SOS-response transcriptional repressor, LexA [Chloroflexus
           aggregans DSM 9485]
 gi|219544354|gb|ACL26092.1| SOS-response transcriptional repressor, LexA [Chloroflexus
           aggregans DSM 9485]
          Length = 216

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 60/218 (27%), Gaps = 22/218 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +I++ I        ++PS   + R   +  TS                  E + KI+ 
Sbjct: 10  QAEIYQYIVDFIRERGISPSIRDIQRDLHISSTSVVSYNLNV---------LERLGKIIR 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               +      +   +       +    +       +G           N  + + VP  
Sbjct: 61  NDKISR----GISLPNLTPALLNQAVGRVPLLGTITAGSPLPDPEEIDLNSADQIVVPAD 116

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK-PRTGDIV 181
             P N +          + +  SM+      GDI++L        G  +  +      + 
Sbjct: 117 VIPPNRL----NGVYAMRVRGQSMIDALIDDGDIVLLRWQETAENGQMVAARLIDENAVT 172

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K         I L   N   P       +++   R++
Sbjct: 173 LKKFYR-EDGRIRLQPANATMPPIYTAPDNVQIQGRVI 209


>gi|325272948|ref|ZP_08139268.1| LexA repressor [Pseudomonas sp. TJI-51]
 gi|324101918|gb|EGB99444.1| LexA repressor [Pseudomonas sp. TJI-51]
          Length = 202

 Score = 75.2 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + + K+  I++ I      H   PS   +A + G    S  +                
Sbjct: 1   MNNLTPKRRAIFDFIRERISDHGQPPSLADIATRFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K + A  +     +    + G       +   +L  P  G            G    
Sbjct: 45  ---KHITALCQAGYIDVTPNQARGIRLADPLRRPEMLEVPVLGQVAAGAPIGPDLGIHEQ 101

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +  P +                 K +  SM+      GD++ +        G  ++ + 
Sbjct: 102 LLLDPSLFRRTPD--------YLLKVRGDSMIDDGIFDGDLVGILQQADARDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L    G+   L+  N  Y    V  + 
Sbjct: 154 D-GEVTIKRLQRV-GKHYRLLPRNPAYAPIDVLPTQ 187


>gi|259908182|ref|YP_002648538.1| Protein UmuD [Erwinia pyrifoliae Ep1/96]
 gi|224963804|emb|CAX55306.1| Protein UmuD [Erwinia pyrifoliae Ep1/96]
 gi|283478109|emb|CAY74025.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia
           pyrifoliae DSM 12163]
 gi|310767905|gb|ADP12855.1| Protein UmuD [Erwinia sp. Ejp617]
          Length = 139

 Score = 75.2 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +       +     K    SM       GD+LI++ ++    GD ++  
Sbjct: 32  DYVE--DRIDLNKLAIKHPSATYFIKVSGDSMREAGIGDGDLLIVDRSLNAVHGDIVVAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218
              G+   K L +     + L+  N  YP  + +   ++E    +
Sbjct: 90  I-AGEFTVKELRTHP--VLQLVPHNPHYPPISFQNAEELEIFGVV 131


>gi|260597557|ref|YP_003210128.1| protein umuD [Cronobacter turicensis z3032]
 gi|260216734|emb|CBA30137.1| Protein umuD [Cronobacter turicensis z3032]
          Length = 155

 Score = 75.2 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 6/132 (4%)

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSMLP 149
             L +P +     F + +   G         +      + + A  +     +    SM  
Sbjct: 14  HPLVWPVTPVNIPFYADLISAGFPSPAADYIDSGIDLVSHLIAHPSSTYVLRVAGDSMRD 73

Query: 150 L-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TV 207
                G +L+++ ++     D ++     G+   K L++       L + N  YP     
Sbjct: 74  AGILDGSLLLVDFSLHAKHNDIVV-ANIGGEFTVKRLVTYP--VAQLRAENPAYPPIAVY 130

Query: 208 EMSDIEWIARIL 219
           +  D+E +  ++
Sbjct: 131 DADDLEIVGVVI 142


>gi|237748614|ref|ZP_04579094.1| transcriptional repressor LexA [Oxalobacter formigenes OXCC13]
 gi|229379976|gb|EEO30067.1| transcriptional repressor LexA [Oxalobacter formigenes OXCC13]
          Length = 212

 Score = 75.2 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 24/224 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   ++I + I R  ++    P+     A L   S N ++                
Sbjct: 1   MIKLTVRQQEILDLIARSIDQTGFPPTRAEIAAELGFKSVNAAEEH-------------- 46

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              L A        +    S G    + +  +P +             G    G+     
Sbjct: 47  ---LQALARKGVIEMVPGISRGIRLVQTDVAVPFVARENQIQYSVPLVGRVAAGSPILAQ 103

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E     +        D   K +  SM  +   +GD++ +    +   G  ++ +   
Sbjct: 104 EHIEKNYQLDPALFTDKPDYLLKVRGLSMRDIGILEGDLIAVKKTEKARDGQIIVAR-LG 162

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL 219
            D+  K      G+S++L+S N  +    V  E  + +    ++
Sbjct: 163 DDVTVKRFKKV-GQSVELISENPDFAPIKVNRESDNFQIEGLVV 205


>gi|260911931|ref|ZP_05918496.1| SOS mutagenesis and repair protein UmuD [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260633954|gb|EEX52079.1| SOS mutagenesis and repair protein UmuD [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 146

 Score = 75.2 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
              + E    +  +          + +  SM       GDI +++ +++   GD ++   
Sbjct: 32  EDYLHETLDFNRDLIRNPEATFYGRVEGDSMIEAGICDGDIAVIDRSLEPRDGDVVVG-Y 90

Query: 176 RTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILW 220
              +   K L    R    I+L   N  +    ++  D  E    ++W
Sbjct: 91  INEEFTIKYLDLCHREEGYIELRPANPNFCPIRIDEDDSFEVWGVVIW 138


>gi|218510024|ref|ZP_03507902.1| peptidase S24 and S26 domain protein [Rhizobium etli Brasil 5]
          Length = 237

 Score = 75.2 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 70/236 (29%), Gaps = 36/236 (15%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           W+ +D        + + LAR+AG+   + NK       G+   P  E + K+ +A  ++ 
Sbjct: 7   WKRLDSRRIELGWSGAELARRAGIPYANINKYLN----GKIEQPRGEEMQKLASAIGKSA 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L D            E  +  +        G F        ++   + +P      + 
Sbjct: 63  LWLRDGLELSDVEAAPIEGRLLPVAVVGKVEAGTFREVDDMDQSERELLSLPADDRFPS- 121

Query: 130 IYAIQTQDTRHKTQDTSMLP----LYRKGDILI------LNSAIQVNCGDRLLIKPRTG- 178
                 +         SM          GD +I      +     +  G  ++++     
Sbjct: 122 -----ARLMAFDVSGDSMNDLRPRPILPGDRVICVSYEDVAHEAPLRDGMVVVVERSRDG 176

Query: 179 ----DIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSD-------IEWIA---RIL 219
               +   K +   + R+     S N  +    V           +E I    R++
Sbjct: 177 GQTREWSVKQIELYQDRTEYHPRSTNLKHRPIVVPRDHSADTGTMVEIIGLVRRVV 232


>gi|326774358|ref|ZP_08233623.1| SOS-response transcriptional repressor, LexA [Streptomyces cf.
           griseus XylebKG-1]
 gi|326654691|gb|EGE39537.1| SOS-response transcriptional repressor, LexA [Streptomyces cf.
           griseus XylebKG-1]
          Length = 231

 Score = 75.2 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 56/219 (25%), Gaps = 25/219 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFG--IEGRNRWPSTESIFKI 61
            +KI +A+          PS   L +  GL  TS    +      +G  R         +
Sbjct: 27  QRKIVDAVRSSISDRGYPPSMRELGKATGLANTSSVAHQVGALMRKGVLRQDPRRPRAYV 86

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
              T                +  +      ++   P                  + + +P
Sbjct: 87  PTMTG---------AGVAAESGSQDAASSLMVIHAPLVGRIAAGVPTTAEEQVEDVLVLP 137

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         Q    K    SM+      G  + +        G  +      G+ 
Sbjct: 138 RQLVGG-------GQVFVLKVSSDSMIKAHIMDGATVAVRRQPDAEIGGSVAAMID-GEA 189

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L  + G ++ L+  N        + +    + +++
Sbjct: 190 TVKRLRRK-GSTVWLIPENDAVEPICADAAS--ILGKVV 225


>gi|78485203|ref|YP_391128.1| putative prophage repressor [Thiomicrospira crunogena XCL-2]
 gi|78363489|gb|ABB41454.1| UmuD protein. Serine peptidase. MEROPS family S24 [Thiomicrospira
           crunogena XCL-2]
          Length = 206

 Score = 75.2 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V        ++ +   +        Q  SM     + GDIL+++ ++    G  ++
Sbjct: 97  ADDYVE--TRLDLNDKLIQNKQATFLLTVQGDSMKKAGIQDGDILVVDRSLTPQDGKIVI 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  +   +  L+  N  YP   V       I  ++
Sbjct: 155 AALD-GELTVKTLSIKSTGT-WLVPENDNYPPIPVREESDIVIWGVV 199


>gi|262195666|ref|YP_003266875.1| transcriptional repressor, LexA family [Haliangium ochraceum DSM
           14365]
 gi|262079013|gb|ACY14982.1| transcriptional repressor, LexA family [Haliangium ochraceum DSM
           14365]
          Length = 226

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 53/215 (24%), Gaps = 20/215 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNK-SKRFGIEGRNRWPSTESIFKI 61
            ++I + I    +     P+   +    G+  T+  N   K    +G  R    +S    
Sbjct: 9   QREILDFITDFIQERGYPPTLREIGEHFGIRSTNGVNDHLKALEKKGYLRREDLKSRA-- 66

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                            +  T  + +                   G    G     V   
Sbjct: 67  ---------MWPVQVPPEHETENRGKVIPLRKNVEEDAVVDIPILGRVAAGLPILAVENV 117

Query: 122 EIRSPHNGIY--AIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           E R   +  +      Q    +    SM       GD + +        GD ++      
Sbjct: 118 EDRVRVDRFFLGTPPQQLFGLRVVGESMIEDGILDGDYVFVKKTPTAQPGDIVV-AMIEE 176

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           +   K     R  SI     N       V+ SD  
Sbjct: 177 EATVKRYYPERD-SIRFEPANSNMRPIVVKKSDFR 210


>gi|149377898|ref|ZP_01895627.1| LexA repressor [Marinobacter algicola DG893]
 gi|149357840|gb|EDM46333.1| LexA repressor [Marinobacter algicola DG893]
          Length = 202

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 60/207 (28%), Gaps = 31/207 (14%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             ++ + I R  +     P+     A L   S N ++             E +  +    
Sbjct: 7   QTQVLDIIRRYLDETGYPPTRAEIAAELGFRSANAAE-------------EHLRALARK- 52

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                         G           +         G    G    G+        E   
Sbjct: 53  --------------GAIEMVPGASRGIRLPDVEADLGLPVVGQVAAGSPILAQEHIEDHC 98

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +   + D   + +  SM  +    GD+L ++    V+ G  ++ +    D+  K 
Sbjct: 99  TLQPEFFSPSADYLLRVRGMSMKDIGILDGDLLAVHRTQDVHNGQVVVAR-VGEDVTVKR 157

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD 211
              + G  + L++ N  +    V++++
Sbjct: 158 F-RKEGSKVYLIAENEEFDPIEVDLTE 183


>gi|88808444|ref|ZP_01123954.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 7805]
 gi|88787432|gb|EAR18589.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 7805]
          Length = 147

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V V      ++ +    +     +    SM       GD+L+++ ++    G  ++
Sbjct: 38  ADDYVEV--GIDLNDQLIRHPSSTFFLRVSGDSMTGAGIHDGDLLVVDRSLDPRPGRVVV 95

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                G    K L   R   + L + N  YP   +E
Sbjct: 96  AVLD-GGFTLKRLARHR-GRLRLEAANPDYPPLELE 129


>gi|303245343|ref|ZP_07331627.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
 gi|302493192|gb|EFL53054.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
          Length = 232

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 7/218 (3%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           EA DR+ +   + T   +A+   +  +S + +KR      + W         L       
Sbjct: 15  EAFDRIKQATGMRTQVEIAKLLDIRQSSISDAKRRQSIP-DSWLIKLYQIYNLNPNWIID 73

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +                +        P            P   + +             
Sbjct: 74  GEQPQFLGEKRGGALHVRESGDGYGRKPKYYQMPVAPMSAPEPEQQDETVTIAETLAVPE 133

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISR 188
            +   +     +  ++ M P+  +G  + ++     +  G    +      ++ K ++  
Sbjct: 134 QFHKPS-LVIVRMDESDMEPVIHRGAYVGIDKDRRTIRSGGLYALDMPMEGLIIKRVVHD 192

Query: 189 -RGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
                + L S N  Y   T+         + R+ W  Q
Sbjct: 193 AENSRLILRSENQTYADQTIPADGAADRVVGRVTWVFQ 230


>gi|78356975|ref|YP_388424.1| LexA repressor [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219380|gb|ABB38729.1| SOS-response transcriptional repressor, LexA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 207

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 56/196 (28%), Gaps = 11/196 (5%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           L   +     RF  + +   P+ + + +I   +  +    ++          +  K   +
Sbjct: 12  LQRKTLEAICRFV-DAKGFPPTVKELSEIFEISPASAHDRINQLVRKRYLKREGGKSRGI 70

Query: 93  -----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
                     +        G+   G           +           Q    +    SM
Sbjct: 71  AVARRPSEMAASLVSVPVVGMVAAGRPILAEENITGQVLVESDVVRSGQHFALRAVGDSM 130

Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           +      GD++I+        GD ++      +   K L   +   I+L+  N       
Sbjct: 131 IGAGINDGDLIIVRQQPIAEDGDIVVALLN-NEATVKRL-KIKDELIELVPENPEVRKIR 188

Query: 207 V-EMSDIEWIARIL-W 220
           +    D+  + +++ W
Sbjct: 189 IRPEDDLRVLGKVVGW 204


>gi|319428033|gb|ADV56107.1| putative phage repressor [Shewanella putrefaciens 200]
 gi|319428273|gb|ADV56347.1| putative phage repressor [Shewanella putrefaciens 200]
          Length = 252

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 58/218 (26%), Gaps = 27/218 (12%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           +    A +A L P    K            P+ E +  I  A   T+  L          
Sbjct: 33  SIRSFALRANLSPPVIKKYVENDST-----PNVERLVAIAEAAGVTVEWLATGKGPKYPN 87

Query: 83  TEKKEKEIPLL-----------YFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHN 128
              +     ++            F    +     S     G      + +      +   
Sbjct: 88  GIIESGHQQIMEGRCGAYKANNDFLSEFALIPGYSIQVSAGWGSEGSDDIEPSRHLAFRK 147

Query: 129 GIYA----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                    +        +  SM P+    + L++N+         + +      +  K 
Sbjct: 148 RWLKWRGFAEKDLVIVWAKGDSMEPIISNNNTLLINTQRTELTDGNIYVIRSDNQLWVKR 207

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
           +  +   +  L+S N  YP   V  ++      + +++
Sbjct: 208 VQVKPN-AWLLLSDNPLYPPIEVPKTEQHNFHVVGQVV 244


>gi|33151742|ref|NP_873095.1| LexA repressor [Haemophilus ducreyi 35000HP]
 gi|44888096|sp|Q7VNI6|LEXA_HAEDU RecName: Full=LexA repressor
 gi|33147963|gb|AAP95484.1| probable LexA repressor [Haemophilus ducreyi 35000HP]
          Length = 211

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 62/218 (28%), Gaps = 33/218 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I++ +    +   + P+   +AR+ G    +                + E   K LA
Sbjct: 10  QQEIFDFLKHHIDTTGMPPTRVEIAREIGFKSPN----------------AAEEHLKALA 53

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                  E     L  P          G    G     +   E 
Sbjct: 54  RKGYIEMLSGTSRGIRILINNDNEDVTQDLSLP--------LIGKVAAGTPIMAIEHVES 105

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG       D   K    SM  +    GD+L ++       G  ++ +    ++  
Sbjct: 106 HYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVAR-VEDEVTV 164

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       V+      +IE IA
Sbjct: 165 KRLEKK-GELIYLHPENDELQPIIVDPRLKYIEIEGIA 201


>gi|33770547|ref|NP_892084.1| prophage repressor [Yersinia phage PY54]
 gi|33636130|emb|CAD91799.1| prophage repressor [Yersinia phage PY54]
          Length = 215

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++   +   LA + G+     +  +          P+ +  FK+    +  I  +
Sbjct: 19  LKALDKKR-FSVRALAERVGITSAGVSHLENSNA-----MPALDLAFKLARELDRPIEWV 72

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L    +  +                +   G     +   G   NT+   +IR P   +Y 
Sbjct: 73  LTGIGNYQQPGIP---------IIGTTLTGPNIEWLEKNGQGVNTLEFVDIRVPARRLY- 122

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGR 191
                   K  + + LP Y +G++LI +       G+ +++  + G + V KV  S+R  
Sbjct: 123 ------GLKVSNDASLPRYTEGEVLIADPDATPITGEEVVVITKNGDEPVIKVFASKRDN 176

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
            + L S +    V   ++ +I  I  I++ 
Sbjct: 177 QVLLESADRKQRVIR-DLDEIIVIHPIIFV 205


>gi|119953755|ref|YP_950560.1| putative repressor [Streptococcus phage SMP]
 gi|118430567|gb|ABK91891.1| putative repressor [Streptococcus phage SMP]
          Length = 240

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 24/202 (11%)

Query: 21  NLTPSGLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
            + P  LA       +S   +         R          K+L      + +   +   
Sbjct: 55  GIDPKALAEGVDFSSSSSPIHAIYNQLEPTRQ--------EKVLDYAEVQLEEQNKVTSI 106

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
                + ++     +    +   G F         +     VP            +  DT
Sbjct: 107 FQVREDSEDYITDYVEGLVAAGHGTFQEDNLHMEVRLRANDVP------------KKYDT 154

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
             K    SM P+ +  D+L +N   QV   D  + +   G    K L         L SL
Sbjct: 155 IAKVAGDSMEPMIKDNDLLFINVTSQVGINDIGVFQIN-GKNFVKKLKRDYDGRWYLQSL 213

Query: 199 NCCYPVDTV-EMSDIEWIARIL 219
           N  Y    + E  +I  I  ++
Sbjct: 214 NNSYEEIYLTEDDEIRTIGEVV 235


>gi|328472910|gb|EGF43758.1| P22 repressor protein c2 [Vibrio parahaemolyticus 10329]
          Length = 228

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 22/202 (10%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86
           LA++ G+ P + +K      E   R    + + K+L  +           +      +  
Sbjct: 33  LAKRLGVTPKAVSKWLN--SESMPRQGKMKELAKVLNVS---------ASWLQYGEPDNG 81

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
            + +  L   PS  G F   G    G     V         +                 S
Sbjct: 82  VENVTHLDIQPSHKGDFPVLGKVSAGKFKEAV-QHFDLEYLSTTVKCHPDSYWLIVDGHS 140

Query: 147 MLP------LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLN 199
           M         + +G +++++   +   G+ ++           K +      +  L+ LN
Sbjct: 141 MTAPQGSGVSFLEGMLILVDPEREYCNGNFVVAYCENKHMATFKKISIEPEGTF-LVPLN 199

Query: 200 CC--YPVDTVEMSDIEWIARIL 219
               Y    +     E    ++
Sbjct: 200 PDPTYKRINIAEEFCEIAGVVV 221


>gi|322385675|ref|ZP_08059319.1| phage transcriptional repressor [Streptococcus cristatus ATCC
           51100]
 gi|321270413|gb|EFX53329.1| phage transcriptional repressor [Streptococcus cristatus ATCC
           51100]
          Length = 258

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 27/231 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + ++  +    L+R  G+  ++     +         P  E++ KI    +  
Sbjct: 19  ISKKIKTLLKQKQIKQIELSRGTGIPASTLTGYIKGNS-----LPVLENMQKIADFFDMD 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------VPE 122
           + +L     S    T    +   +                    +   T         P 
Sbjct: 74  VQELDPRYLSVHSPTPFSLEFTDIFQSLDQTRKQAVTDFAKKELDDQTTEERLKDNYFPY 133

Query: 123 IRSPHNGIYAIQTQ-------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                   +  + +             D     +  S+ P Y +G + ++ +      G 
Sbjct: 134 KVYESFQTFLNKPEQADIVWLDKELDYDIALWIRTDSLEPKYPQGSVALIKNTHFEFAG- 192

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
            +      G  + K + +     I L+SLN  Y    +    + + I R++
Sbjct: 193 AIYAIDYDGQTILKRVFNDPTG-IRLISLNKKYSDKFIPHQEEPKVIGRVM 242


>gi|254245084|ref|ZP_04938406.1| hypothetical protein PA2G_05970 [Pseudomonas aeruginosa 2192]
 gi|126198462|gb|EAZ62525.1| hypothetical protein PA2G_05970 [Pseudomonas aeruginosa 2192]
          Length = 265

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 63/236 (26%), Gaps = 39/236 (16%)

Query: 10  WEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE- 67
            +AI  +      LT  G+AR+ G+   S +              + E   KI       
Sbjct: 36  LKAIYQQKRHELGLTQEGIARRLGITQGSLSHYLNGRN-----ALNAEFAVKIAELLQVA 90

Query: 68  -----------------------TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
                                     +      +      +  +  P++ +  +G     
Sbjct: 91  VGSFSPRLEEEITRMIMALPAKGRRQEREASNVTLALQPHRSPRRYPVISWVAAGERAES 150

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI- 163
                P G     +   E    +     I               P +  G  +++     
Sbjct: 151 PDLH-PPGVADEWLPSTENAGANGYWLIILGDSMSSP-----TPPSFPPGTPILVQPEGF 204

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +  G   + K   G+   K  +   G    L+ LN  Y    ++  D E I R++
Sbjct: 205 DLISGKYYVAKHSDGETTFKQYVYDAGVKY-LVPLNKAYRTLEMD-DDWEIIGRVI 258


>gi|325453307|gb|ADZ13610.1| protein umuD [Cronobacter phage ENT39118]
          Length = 145

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 6/132 (4%)

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSMLP 149
             L +P +     F + +   G         +      + + A  +     +    SM  
Sbjct: 4   HPLVWPVTPVNIPFYADLISAGFPSPAADYIDSGIDLVSHLIAHPSSTYVLRVAGDSMRD 63

Query: 150 L-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TV 207
                G +L+++ ++     D ++     G+   K L++       L + N  YP     
Sbjct: 64  AGILDGSLLLVDFSLHAKHNDIVV-ANIGGEFTVKRLVTYP--VAQLRAENPAYPPIAVY 120

Query: 208 EMSDIEWIARIL 219
           +  D+E +  ++
Sbjct: 121 DADDLEIVGVVI 132


>gi|311695227|gb|ADP98100.1| LexA repressor [marine bacterium HP15]
          Length = 202

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 61/207 (29%), Gaps = 31/207 (14%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             ++ + I R  +     P+     A L   S N ++             E +  +    
Sbjct: 7   QSQVLDIIRRYVDETGYPPTRAEIAAELGFRSANAAE-------------EHLRALARK- 52

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                         G           +         G    G    G+        E   
Sbjct: 53  --------------GAIEMVPGASRGIRLPEAEEDLGLPVIGQVAAGSPILAQEHIEDHC 98

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +   + D   + +  SM  +    GD+L ++S   V+ G  ++ +    ++  K 
Sbjct: 99  TLQPEFFSPSADYLLRVRGMSMKDIGILDGDLLAVHSTQDVHNGQVVVAR-VGDEVTVKR 157

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD 211
              + G  + L++ N  +    V++++
Sbjct: 158 F-RKEGSKVYLIAENEEFAPIEVDLTE 183


>gi|289423764|ref|ZP_06425559.1| cI-like protein [Peptostreptococcus anaerobius 653-L]
 gi|289155803|gb|EFD04473.1| cI-like protein [Peptostreptococcus anaerobius 653-L]
          Length = 226

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 64/228 (28%), Gaps = 17/228 (7%)

Query: 6   HKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            K+I+   +    +  +++   L++   ++  S +         +      + IF I  A
Sbjct: 2   EKQIFISRLKLAMKTRHISQYKLSKLTKINKGSLSSYMSGKYLPKP-----DKIFIIADA 56

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEI 123
            N     L+            K  E   L            S   P   +        +I
Sbjct: 57  LNINPDWLMCNSEEMELLETYKSSEPTSLNIHSYPLISGSVSAGIPDLIDPQEEFDYIDI 116

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDI 180
                G Y  +      K    SM      G  +++     +     GD ++        
Sbjct: 117 PDSMLGKYKSRKDMVVMKVNGESMNRTIPDGANILVARDYDIKSISTGDIVVFSHNYS-Y 175

Query: 181 VAKVLISRRGRS---IDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222
             K   + +          S + C+    +      ++  I ++++ S
Sbjct: 176 SVKRFTNDKKNKRFIFSPESYDDCFKDLIISYDNSQELILIGKVVFYS 223


>gi|319896743|ref|YP_004134936.1| hypothetical protein HIBPF04060 [Haemophilus influenzae F3031]
 gi|317432245|emb|CBY80597.1| conserved hypothetical protein [Haemophilus influenzae F3031]
          Length = 322

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 70/256 (27%), Gaps = 48/256 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+ S     E +  +     +  +  A   G+   S  K       G  R P    I +
Sbjct: 68  MTTLS-----ERLKALLVEKGINQTEFANMIGIAQPSMQKIL----AGETRNPR--KIVE 116

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94
           I      T   LL    +   +T +  +                          +   L 
Sbjct: 117 IAKELGTTPDYLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLQKQQVSLK 176

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQDT 145
             P+    F                 P      +                        + 
Sbjct: 177 TKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFNE 236

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PV 204
           SM P+  K D++ +++  +   G+ + +     ++  + L       +++++ N      
Sbjct: 237 SMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNVVAENERVGSS 296

Query: 205 DTV-EMSDIEWIARIL 219
             + ++S +  + R +
Sbjct: 297 FEIDDLSRLNVLGRCV 312



 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 11/79 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+       E +  +    N+T + LA   G    + +   +   + + R     +I +
Sbjct: 1  MTTL-----GERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49

Query: 61 ILAATNETICQLLDLPFSD 79
          I  A       L       
Sbjct: 50 IANALGVDPNWLKYGSTKM 68


>gi|307719870|ref|YP_003875402.1| transcriptional repressor [Spirochaeta thermophila DSM 6192]
 gi|306533595|gb|ADN03129.1| transcriptional repressor [Spirochaeta thermophila DSM 6192]
          Length = 201

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 34/217 (15%)

Query: 6   HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            K++   I R  E H    +   +AR   ++  +         E                
Sbjct: 9   QKEVLSFIQRFRELHGYVPSYREIARHFSVNVRAIYDILNALKEK--------------- 53

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                          +    +        L    +              +    V VPE 
Sbjct: 54  --GYVRHSPHKSRALEIVEEDPPPVVYLPLVGEVAAGRPL-----LAEEHIEGEVVVPES 106

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P  G      +    + +  SM      KGD+ I+        GD ++          
Sbjct: 107 FLPRGG-----GRFFVLRVKGESMEGAGILKGDLAIIREQDWAVDGDIVVALLEEN-ATL 160

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K     +   I L S +  YP      + ++ + +++
Sbjct: 161 KRFFKEK-HRIRLESSHPSYPPIY--TTQVKILGKLV 194


>gi|121604820|ref|YP_982149.1| LexA repressor [Polaromonas naphthalenivorans CJ2]
 gi|171769293|sp|A1VNK0|LEXA_POLNA RecName: Full=LexA repressor
 gi|120593789|gb|ABM37228.1| SOS-response transcriptional repressor, LexA [Polaromonas
           naphthalenivorans CJ2]
          Length = 234

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 16/214 (7%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              +    +I E I     +    P+     A L   S N ++             +++ 
Sbjct: 15  PKLTARQAQILELIRNAIAQTGAPPTRAEIAAELGFRSPNAAEEH----------LKALA 64

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTV 118
           K       +         +D      + +                   G    G+     
Sbjct: 65  KKGVIELVSGTSRGIRLRTDSLQALNESRISQFSPPVQRLEQLTLPLVGRVAAGSPILAQ 124

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E           Q  D   K +  SM  +    GD+L +  A +   G  ++ +   
Sbjct: 125 EHIERTYFFESRLFEQQPDYLLKVRGMSMRDIGIMDGDLLAVKQAREAKNGQIVVAR-LG 183

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            ++  K         I+L+S N  +    V+  +
Sbjct: 184 DEVTVKRFHR-NQHLIELLSENPDFKPIVVQPGE 216


>gi|330875013|gb|EGH09162.1| LexA repressor [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330963587|gb|EGH63847.1| LexA repressor [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 202

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 45  --KHIVALTEAGLIEVVAHQARGIRLLNTEPRPELLEIPVLGRV-----AAGAPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 98  IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R  + + L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 187


>gi|264678802|ref|YP_003278709.1| prophage repressor [Comamonas testosteroni CNB-2]
 gi|262209315|gb|ACY33413.1| putative prophage repressor [Comamonas testosteroni CNB-2]
          Length = 179

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +             +      +  SM P +++GD +I++ +++   G  +  K    +  
Sbjct: 70  DAHDWLITSDKHSKETFVLTIRGNSMEPDFKEGDAVIIDPSVKPRPGSFVAAKNGREEAT 129

Query: 182 AKVLISR-----RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K    R          +L+ LN  YP    +   IE I  ++
Sbjct: 130 FKKYRPRSIDVLGNEVFELVPLNEDYPTMRSDEQPIEIIGTMV 172


>gi|331092945|ref|ZP_08341450.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022479|gb|EGI02536.1| LexA repressor [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 202

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 45  --KHIVALTEAGLIEVVPHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 98  IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R  + + L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 187


>gi|68249874|ref|YP_248986.1| hypothetical protein NTHI1517 [Haemophilus influenzae 86-028NP]
 gi|68058073|gb|AAX88326.1| hypothetical protein NTHI1517 [Haemophilus influenzae 86-028NP]
          Length = 322

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 48/256 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT  S     E +  +     +  +  A   G+   S  K       G  R P    I +
Sbjct: 68  MTKLS-----ERLKALLVEKGINQTEFANMIGIAQPSMQKIL----AGETRNPR--KIVE 116

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94
           I      T   LL    +   +T +  +                          +   L 
Sbjct: 117 IAKELGTTPDYLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLHKQQISLK 176

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQDT 145
             P+    F              V  P      +                        + 
Sbjct: 177 TKPTEEWVFALDVNRLAETDIINVHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFNE 236

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PV 204
           SM P+  K D++ +++  +   G+ + +     ++  + L       ++ ++ N      
Sbjct: 237 SMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGSS 296

Query: 205 DTV-EMSDIEWIARIL 219
             + ++S +  + R +
Sbjct: 297 FEIDDLSRLNVLGRCV 312



 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 11/79 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+       E +  +    N+T + LA   G    + +   +   + + R     +I +
Sbjct: 1  MTTL-----GERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49

Query: 61 ILAATNETICQLLDLPFSD 79
          I  A       L       
Sbjct: 50 IANALGVDPNWLKYGSTKM 68


>gi|114707513|ref|ZP_01440409.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114537072|gb|EAU40200.1| prophage MuSo1, transcriptional regulator, Cro/CI family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 183

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 12/179 (6%)

Query: 55  TESIFKILAATNETICQLLDLPF-SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            +++ KI  AT  ++  L       +  T+    ++ P++      +           G 
Sbjct: 1   MDALVKISEATGVSMDWLCTGSGAREHLTSLTLSRDEPIMVDEGRVAIVPRIGTRADAGP 60

Query: 114 K-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                    +        +                    SMLP ++ GD  ++++ I   
Sbjct: 61  GALVQIEDDDVSYFGFRSAWLRAQGVEPKAVRLLDIHGDSMLPTFKDGDTALVDTGINRV 120

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI---EWIARILWA 221
              R+      G ++ K +I +R  S+ L S N   Y  + V   ++       R+ WA
Sbjct: 121 VDSRIYAIVFAGLLIVKRVILKRDGSLILRSDNRDVYEDEMVPSGEVSDLHVAGRVFWA 179


>gi|323190487|gb|EFZ75761.1| helix-turn-helix family protein [Escherichia coli RN587/1]
          Length = 238

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 15/211 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I E I    +   LT   +A+  G+   S  K +    +     P  E+++ +    +
Sbjct: 17  NTISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSK-----PDGENLYLLSKLLS 71

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++   +L       +T + +  + P +    +                     +P I + 
Sbjct: 72  KSPEWILYGKDCHDKTDDLRLNQYPYISDNIARLPVLTWEQAGYWDMSCPVTKIPGINNW 131

Query: 127 HNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRL-LIKPRT 177
            + +            +  +M     LP    G  +++           G  + +    T
Sbjct: 132 VDVMTKTAENSFLLHVEGDAMTNSNGLPTIPDGSTVLITPCSSNIRELVGKIILIQLEGT 191

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
            ++  K +       I L+SLN  Y    + 
Sbjct: 192 PNVTLKKVAIDGPN-IYLLSLNPLYKPIELN 221


>gi|293395287|ref|ZP_06639572.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422244|gb|EFE95488.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 248

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 62/240 (25%), Gaps = 31/240 (12%)

Query: 11  EAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
             +  +  R+    +     +R       + ++      +   R        +I A  + 
Sbjct: 9   NNLRDLMARYARNGINQHEFSRLVESSAPTLSQI---TGDKSCRNLGDNLARRIEARLSL 65

Query: 68  TICQLLDLPF--------------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
               L                          K                       F  G+
Sbjct: 66  PTGWLDVFHEKSLARPFENVAAGSDFQPARLKPVVWEETEQDREEFVEIPLLDIDFSAGD 125

Query: 114 K-WNTVGVPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
             ++ V +          Y  +           +   +SM P  + GD++ +N+      
Sbjct: 126 GCYDIVDLEAFSLIFRRYYLHKMGIPVNAARIIRISGSSMEPRLQDGDVVGINTDDTRIR 185

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVE----MSDIEWIARILWAS 222
             +         +  K+LI +    + + SLN   Y  + +        +  + R+ W+S
Sbjct: 186 EGKTYAIRHGNLLRVKILIEQPDGGVIIRSLNREEYQDEQLSYQQRKEQLIVLGRVFWSS 245


>gi|319787765|ref|YP_004147240.1| transcriptional repressor, LexA family [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466277|gb|ADV28009.1| transcriptional repressor, LexA family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 212

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +        D   + Q  SM       GD++ ++   +   G  ++ +   G++ 
Sbjct: 110 EALWLDRRLFSPRPDYLLRVQGDSMIEDGILDGDLVGVHRTPEARDGQTVVARVD-GELT 168

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L       I L+  N  +    V    
Sbjct: 169 IKRLQR-GADRIRLLPRNPAHAPIEVHPGQ 197


>gi|300727303|ref|ZP_07060717.1| protein UmuD [Prevotella bryantii B14]
 gi|299775347|gb|EFI71943.1| protein UmuD [Prevotella bryantii B14]
          Length = 144

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E    +  +          + +  SM       GDI +++ +++   GD ++      + 
Sbjct: 37  ETLDFNRDLIRNPEATFYGRVEGNSMIEAGINDGDIAVIDRSVEAQHGDIVVG-YINDEF 95

Query: 181 VAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILW 220
             K L    R+   I+L+  N  +    ++  D  E    ++W
Sbjct: 96  TIKYLDLQHRKDGYIELLPANKDFKPIRIDPDDRFEVWGVVIW 138


>gi|89093206|ref|ZP_01166156.1| LexA repressor [Oceanospirillum sp. MED92]
 gi|89082502|gb|EAR61724.1| LexA repressor [Oceanospirillum sp. MED92]
          Length = 200

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 35/212 (16%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             ++ + I R        P  + +AR  G    S N ++             +++ K   
Sbjct: 7   QTEVLDCIKRHIGETGYPPTRADIARDLGFK--SANAAEEH----------LKALAK--- 51

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                           G           +         G    G    G+        E 
Sbjct: 52  ---------------KGAIEIIPGTSRGIRVPELEEETGLPIVGQVAAGSPILAQEHVED 96

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +  +     D   + + TSM  +    GD+L ++   Q   G+ ++ +    ++  
Sbjct: 97  HCTISSDFFHPKADYLLRVKGTSMKDIGIMDGDLLAVHQCQQARDGEIVVARLD-DEVTV 155

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           K    + G  + L++ N  +    V++S+ E 
Sbjct: 156 KRF-KQEGNIVYLIAENEEFEPIVVDLSEQEI 186


>gi|326795507|ref|YP_004313327.1| SOS-response transcriptional repressor, LexA [Marinomonas
           mediterranea MMB-1]
 gi|326546271|gb|ADZ91491.1| SOS-response transcriptional repressor, LexA [Marinomonas
           mediterranea MMB-1]
          Length = 207

 Score = 74.8 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 52/216 (24%), Gaps = 33/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M   +     + E I +        P  + +A + G                  R P+  
Sbjct: 1   MIKLTKRQSDVLETIRQHISETGFPPTRAEIAARLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K L+                             L        G    G    G   
Sbjct: 44  EEHLKALSKKGAIEMLSGASRGIRLINETPAGANDSDL--------GLPVVGKVAAGAPI 95

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                                D        SM  +    GD+L ++    V  G  ++ +
Sbjct: 96  LAQENVATHISVPPSMFSPKADYLLSVSGMSMKDVGIMDGDLLAVHKTHAVRNGQIVVAR 155

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
               ++  K    + G  + L++ N  +    V++ 
Sbjct: 156 I-GEEVTVKRFEKK-GSKVRLIAENTEFDDILVDLE 189


>gi|326565740|gb|EGE15902.1| peptidase S24-like protein [Moraxella catarrhalis BC1]
          Length = 228

 Score = 74.8 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 57/225 (25%), Gaps = 17/225 (7%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  +     + PS  A KA   P    +  +   + + R    + + + L      +  
Sbjct: 2   FLSHLLNAQGVMPSERA-KADQFPKMIRRYSKG--QAKPRNDKMKLLTQCLGVPITWLDY 58

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGVPEIRSPHN-- 128
                  +        +           +   F     F  G        P         
Sbjct: 59  GEGEMTKNNDKLTPITEWDDSTPLDDDEAEIPFYKDIAFACGYGAVNGDAPLEGRKLRMG 118

Query: 129 -----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                 +  +          D SM P  + GD + ++   +     R+         + K
Sbjct: 119 RRTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCK 178

Query: 184 VLISRRGRSIDLMSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
            L       + ++S N   +P        +   + E I  +   S
Sbjct: 179 RLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 223


>gi|254498799|ref|ZP_05111510.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
           drancourtii LLAP12]
 gi|254351963|gb|EET10787.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
           drancourtii LLAP12]
          Length = 185

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        +  +               SM  +    GD+LI++ +++   G  ++
Sbjct: 75  GDDYID--RYLDLNQQLVQHPAATFIVTATGDSMTDVGIHSGDMLIVDKSLEAQHGKIVI 132

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L   R   + L+  N  Y    +       I  ++
Sbjct: 133 AALN-GELTVKRLSKIR-GRVQLLPENPRYKPIDITDEQDLVIWGVV 177


>gi|330962394|gb|EGH62654.1| LexA repressor [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 202

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +               +
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------K 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            I  +  A    +            +  + E     +    +            +    +
Sbjct: 46  HIVALAEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRVAAGAPIGPDLDIHSTLHLD 105

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                 +                 + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 106 RGTFTRVPD------------YLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R  + + L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 187


>gi|146282101|ref|YP_001172254.1| LexA repressor [Pseudomonas stutzeri A1501]
 gi|145570306|gb|ABP79412.1| LexA repressor [Pseudomonas stutzeri A1501]
          Length = 145

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
           P     G    G    G         E     +  +     D   +    SM  +    G
Sbjct: 16  PAPAETGLPIIGRVAAGAPILAQQHVEESCQISPAFFHPRADYLLRVHGMSMKDIGIYDG 75

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DI 212
           D+L +++  +   G  ++ +    ++  K      G+ + L++ N  +    V++   ++
Sbjct: 76  DLLAVHTTREARNGQIVVAR-VGDEVTVKRFKRD-GKKVWLLAENPEFAPIEVDLEHQEL 133

Query: 213 EWIA 216
               
Sbjct: 134 VIEG 137


>gi|221135031|ref|ZP_03561334.1| LexA repressor [Glaciecola sp. HTCC2999]
          Length = 207

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 37/225 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I        + P  + +AR+ G              E   +  + +
Sbjct: 1   MRPLTPRQQEVLDLIKAKMLDTGMPPTRAEIARQLGFKSP-------NAAEEHLKALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + +ILA T                    +  ++ +         G    G    G    
Sbjct: 54  GVIEILAGT-------------------SRGIKLNIPLDDTPEELGLPLIGRVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++  I V+ G  ++ + 
Sbjct: 95  AQEHVESHYQVDPNLFHPQADFLLRVNGMSMKDIGILDGDLLAVHRTIDVHNGQVVVAR- 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIA 216
              D+  K L  + G+ + L + N  +    V++++    IE IA
Sbjct: 154 VGEDVTVKRL-EKNGQHVLLHAENEDFDPIKVDLAEEPFNIEGIA 197


>gi|291285761|ref|YP_003502579.1| putative regulatory protein [Escherichia coli O55:H7 str. CB9615]
 gi|290765634|gb|ADD59595.1| Putative regulatory protein [Escherichia coli O55:H7 str. CB9615]
 gi|320199709|gb|EFW74298.1| regulatory protein cI [Escherichia coli EC4100B]
 gi|323969504|gb|EGB64796.1| peptidase S24 [Escherichia coli TA007]
          Length = 215

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 17/210 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79
           + LA   G+D  + ++ +     G+ +  + +++  I  +    I  L    F       
Sbjct: 4   ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDFKSNTVCK 59

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136
              +E   +   +             +G+   G+  + +   E R+ +            
Sbjct: 60  NSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +  SM P    GD++ ++ +I    GD + +      I  K L       + ++
Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178

Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223
           S N  Y    +            ++L  SQ
Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207


>gi|153004966|ref|YP_001379291.1| SOS-response transcriptional repressor LexA [Anaeromyxobacter sp.
           Fw109-5]
 gi|166224551|sp|A7HC61|LEXA_ANADF RecName: Full=LexA repressor
 gi|152028539|gb|ABS26307.1| SOS-response transcriptional repressor, LexA [Anaeromyxobacter sp.
           Fw109-5]
          Length = 231

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 57/228 (25%), Gaps = 13/228 (5%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +    ++   I R  E +   P+   +     +  T  N           +   T 
Sbjct: 1   MDALTDRQLEVLRFIARQIEDNGYPPTIREIGEALDIRST--NGVNDHLKALERKGFLTR 58

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K  A       + +    +         +   +   P          G    G    
Sbjct: 59  DPVKSRALIPTPQAREVLGGGARASNVVPFTRTPAVGLKPAGRLVEIPILGRVAAGQPIL 118

Query: 117 TVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIK 174
                E     +  +     +    + Q  SM+      GD + +   +    GD ++  
Sbjct: 119 AQERVEDTVQVDSFLLGTNKKVYGLRVQGDSMIGDGILPGDYIFVKKQLHAEDGDIVVAM 178

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
               +   K +    G  +     N       V  SD      +  ++
Sbjct: 179 ID-EEATVKRVYF-EGDRVRFQPSNPRMAPIYVRGSDFRTTMILGVVV 224


>gi|313498056|gb|ADR59422.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 234

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 16/202 (7%)

Query: 10  WEAIDR-MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           W A+ R   E   LT   LA + G+   S           + R P  ES+ +        
Sbjct: 20  WIALVRDRMEELGLTQEQLAERVGVSQGSVGHWVN-----KRRQPKIESMNRTFVEIGMP 74

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRS 125
               + L         ++     +          +     +P    W+ +      E   
Sbjct: 75  HY-NVSLQLRIQGQVGEERSVYEIADDDELDLMRYIVCFRYPV-LGWSELDAATAVEPAV 132

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                Y  Q +      ++ +M  +      +G  ++++  ++   G  ++ +      +
Sbjct: 133 FEQTDYLAQGKAFWLTVENDAMSAVSGRSVPQGMRMLVDPGVEAEAGRLVIARQPGKPAI 192

Query: 182 AKVLISRRGRSIDLMSLNCCYP 203
            + L    G+   L +LN  YP
Sbjct: 193 FRELAEEGGQRY-LKALNSNYP 213


>gi|330951526|gb|EGH51786.1| peptidase S24, S26A and S26B [Pseudomonas syringae Cit 7]
          Length = 201

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 44/178 (24%), Gaps = 10/178 (5%)

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           RW  T    K                         +      ++     + G   + +  
Sbjct: 16  RWLRTGEGPKHPNECANENTGGDTRVIIHQARNVSRGDVEIQIFMEAESTQGLGKTVLAE 75

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                  + +P     + GI               SM    + G IL ++  +       
Sbjct: 76  APG--QKIRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGE 131

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           +      G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 132 IYALEHGGILRVRYLYRLPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 189


>gi|220936308|ref|YP_002515207.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997618|gb|ACL74220.1| Repressor lexA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 154

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 129 GIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             + ++      + +  SM+    + GDI+++        G  ++       +  K    
Sbjct: 57  PAHMVRRNTYALRVRGHSMIDDNIQDGDIIVVERRQSAENGQTVVAMINGEQVTLKKFYV 116

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            R   I L   N       +   +IE +  +
Sbjct: 117 EREG-IRLQPANPDMEPIILRNEEIEILGIV 146


>gi|71899794|ref|ZP_00681945.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1]
 gi|71730489|gb|EAO32569.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1]
          Length = 278

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 62/214 (28%), Gaps = 23/214 (10%)

Query: 17  AERHNLTPSGL-ARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            E+  +T     A K G    PT  ++          +        KI  +       + 
Sbjct: 65  LEKSGITRRQDQAEKLGGLFSPTYISQFLDG------KHIVDNVAKKISESLGYDSNWMD 118

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN----- 128
              + +      +  E       P         G    G        PE+          
Sbjct: 119 RPQWYEDEQIFSQYIEATP---QPGYVLFKLFEGAAGMGTGIRNQDYPEVMRTMEVAEWE 175

Query: 129 -----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                G      +      +  SM PL   GDI+ ++++I    GD   +     +   K
Sbjct: 176 VRKKLGFLPSPGRIQMITGRGPSMRPLIEDGDIVWIDTSIDYFNGDDYYLINYGDETQIK 235

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +L  R    + ++S+N  +     E ++I    +
Sbjct: 236 MLQRRIDG-LYVVSVNPEFKEWRCEPNEIFIRGK 268


>gi|209363835|ref|YP_001423989.2| repressor protein C2 [Coxiella burnetii Dugway 5J108-111]
 gi|207081768|gb|ABS77587.2| repressor protein C2 [Coxiella burnetii Dugway 5J108-111]
          Length = 238

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 19/210 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S S       +  +    ++  S LAR+  +     ++       G+N  P   +I  
Sbjct: 23  MASLS-----SNLKTLMTSVHINASELARRTEIAQPIIHRL----STGQNTNPKLATIKP 73

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--GFFDSGVFPTGNKWNTV 118
           I       I QL+         + +           P  S           P     + V
Sbjct: 74  IARYFMVNISQLIGEEPLPSDQSPQITGNYRAWNRVPLISWKDATSWPEALPHYQTSDEV 133

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                 +  + +            Q  +M PL+  G  +I+    +    D ++++ +  
Sbjct: 134 MYISTDANVSKL------AYGLIIQGCAMEPLFPNGTTIIVEPERKPKDRDFVVVRLQGE 187

Query: 179 -DIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
            +   + +I+       L SLN       V
Sbjct: 188 PEARLRQIITEGNDRY-LKSLNPELEKLEV 216


>gi|237806922|ref|YP_002891362.1| SOS-response transcriptional repressor, LexA [Tolumonas auensis DSM
           9187]
 gi|259494480|sp|C4L7X7|LEXA_TOLAT RecName: Full=LexA repressor
 gi|237499183|gb|ACQ91776.1| SOS-response transcriptional repressor, LexA [Tolumonas auensis DSM
           9187]
          Length = 206

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++   I    ++  + P  + +A + G              E   +  + +
Sbjct: 1   MKQLTPRQAEVLALIRSAVQQTGMPPTRAEIASELGFKSA-------NAAEEHLKALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + +++  T                      + I LL   P    G    G    G    
Sbjct: 54  GVIRMMPGT---------------------SRGIQLLTDEPEEDEGLPLIGRVAAGEPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +G       D   +    SM  +    GD+L ++   Q N G  ++ + 
Sbjct: 93  AQQHIETHYQIDGSLFHPRADFLLRVHGMSMKNIGILDGDLLAVHKTTQANNGQVVVARV 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K    + G  + L+  N       V+++ 
Sbjct: 153 GDDEVTVKRFERK-GHIVQLLPENEELQPIVVDLTQ 187


>gi|94310919|ref|YP_584129.1| LexA repressor [Cupriavidus metallidurans CH34]
 gi|48474945|sp|Q9AGM5|LEXA_RALEU RecName: Full=LexA repressor
 gi|123383747|sp|Q1LLW6|LEXA_RALME RecName: Full=LexA repressor
 gi|13183716|gb|AAK15316.1|AF330820_1 LexA [Cupriavidus necator]
 gi|93354771|gb|ABF08860.1| DNA-binding transcriptional repressor of SOS regulon [Cupriavidus
           metallidurans CH34]
          Length = 218

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 21/216 (9%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++I++ I          P  + +A + G              E   R  + +
Sbjct: 1   MATLTPRQQQIFDLIRDTIRNTGFPPTRAEIAAEFGFSSP-------NSAEEHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++    +  I   +    S+             L  P          G    G+   
Sbjct: 54  GVIELTPGASRGIRLKVTRSDSERPDQFS-------LPMPGVLQLTLPLVGRVAAGSPIL 106

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                + +   +     +  D   + +  SM       GD+L +  A +   G  ++ + 
Sbjct: 107 AAEHIDRQYQVDASVFDERPDYLLRVRGLSMRDAGILDGDLLAVKKASEAANGKVVVAR- 165

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K L  R G +I+L++ N  +    +    
Sbjct: 166 LGDDVTVKRLKKR-GDTIELIAENPDFQNIVLHAGR 200


>gi|324117929|gb|EGC11828.1| peptidase S24 [Escherichia coli E1167]
          Length = 215

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 17/210 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79
           + LA   G+D  + ++ +     G+ +  + +++  I  +    I  L    F       
Sbjct: 4   ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDFKSNTVCK 59

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136
              +E   +   +             +G+   G+  + +   E R+ +            
Sbjct: 60  NSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +  SM P    GD++ ++ +I    GD + +      I  K L       + ++
Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178

Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223
           S N  Y    +            ++L  SQ
Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207


>gi|289423964|ref|ZP_06425757.1| hypothetical phagelike protein [Peptostreptococcus anaerobius
           653-L]
 gi|289155741|gb|EFD04413.1| hypothetical phagelike protein [Peptostreptococcus anaerobius
           653-L]
          Length = 253

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 63/219 (28%), Gaps = 23/219 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I        LT   L +  G    + NK +   +E   R     +I ++    N    
Sbjct: 41  KRIKEKRLELGLTQEELGKMIGTQRAAVNKYESGLVENMKRS----TIKQLSLIFNVDPK 96

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L+     +  T     +         +G                +T  +  I     G 
Sbjct: 97  WLMAFDIDEINTGNNHNEYRMFPVSISAGCLEDI--------EAIDTYDIVTIADEIMGK 148

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILN----SAIQVNCGDRLLIKPRTGDIVAKVLI 186
           YA +      K    SM  +   G  ++++        ++  D ++     G    K  +
Sbjct: 149 YAGRKGIILLKVNGESMNNVIPDGSYIVVDTYKTKVTDISDRDIVV-FSENGSYSVKRYV 207

Query: 187 SR-RGRSIDLMSLNCC--YPVDTV---EMSDIEWIARIL 219
           +            +    +    V     S+++ I +++
Sbjct: 208 NDIANERFLFKPDSTDDTFTAIEVKYENSSNLKLIGKVV 246


>gi|254509256|ref|ZP_05121350.1| LexA repressor [Vibrio parahaemolyticus 16]
 gi|219547810|gb|EED24841.1| LexA repressor [Vibrio parahaemolyticus 16]
          Length = 206

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 63/214 (29%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KEAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 94  AQEHVETHYQVDPSMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVVVARV 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G ++ L + N  +    V++
Sbjct: 154 D-EDVTVKRLERK-GSTVLLHAENEEFEPIKVDL 185


>gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D
           str. JGS1721]
 gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D
           str. JGS1721]
          Length = 342

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 10/163 (6%)

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +I       I  L +    +     KK K+   +               F        +
Sbjct: 174 IEIAYELTPNIEDLRNKKLKEWENQYKKNKDYKNITRIDKYGNVAAGLPSFACEEVEKLL 233

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +P         ++             SM  LY  G+++I+     V  GD ++     G
Sbjct: 234 YLP------KKYFSSAYDYFALTINGDSMNKLYEDGEVIIVRKQNYVRNGDIIIACIL-G 286

Query: 179 DIVAKVLISRRGR---SIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +   K            +   S N  +        +I  + ++
Sbjct: 287 EATCKEYYFNEDEDKHELIPHSTNPKHKPQFYSDDEIMILGKV 329



 Score = 39.7 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +    + + LT   LA++  +  ++ +  +   +E     PS   +  +    N +
Sbjct: 8  NNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVE-----PSIYFLINLANEMNCS 60


>gi|116495434|ref|YP_807168.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334]
 gi|89953887|gb|ABD83418.1| putative phage transcriptional repressor [Lactobacillus casei phage
           Lca1]
 gi|116105584|gb|ABJ70726.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC
           334]
          Length = 227

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 69/221 (31%), Gaps = 17/221 (7%)

Query: 14  DRMAERHN-LTPSGLARKA-G-LDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETI 69
           D + +    ++    ++++ G +   +  ++++     G+   PS E++ +     N + 
Sbjct: 6   DYLRQLRGTMSLREASQRSHGRISHAAIAQAEKGINSHGKPFTPSAETLKEFAKLYNVST 65

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----GNKWNTVGVPEIR 124
            +L+ +     ++++     IP+           +             +    + V +  
Sbjct: 66  TKLMKMAGYIEKSSDLPSNAIPVSSEVADQPVMVYGEIQAGVAKWAKQDIIGQINVTKSF 125

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           +   G           K    SM      G   + +  ++   GD + +   +     K 
Sbjct: 126 AKRYGA----KNLFALKVDGESMNREIPNGYTAVFSKDLEPESGDIVAVMIDSESATIKR 181

Query: 185 LISRR-GRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221
                     +  S +  +           D + I + L+A
Sbjct: 182 FRETSLAVMFEPSSWDPSFKPYVFPKDGIQDFKIIGKFLYA 222


>gi|238921803|ref|YP_002935317.1| repressor LexA [Eubacterium eligens ATCC 27750]
 gi|238873475|gb|ACR73183.1| repressor LexA [Eubacterium eligens ATCC 27750]
          Length = 179

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 38/159 (23%), Gaps = 3/159 (1%)

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +    +  +                                     G     V  P
Sbjct: 11  ADPFSSLTDEGREKAMDYINLLHASGMYEKQTAKIIPFRSIDIFENAVSAGTGNFLVDGP 70

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           +     +     +           SM P +  G I  +     V  G+  +     G+  
Sbjct: 71  KETVRIDESLLPEDTTFGVCISGDSMEPEFHDGQIAWVLQQESVANGEIGIFALN-GEAY 129

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            K L       I L+SLN  Y    V E   ++   ++L
Sbjct: 130 IKKL-KDDKDGIFLISLNEKYAPIKVGENDRLDIFGKVL 167


>gi|52841463|ref|YP_095262.1| SOS response transcriptional regulator [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54296998|ref|YP_123367.1| hypothetical protein lpp1039 [Legionella pneumophila str. Paris]
 gi|52628574|gb|AAU27315.1| SOS response transcriptional regulator [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53750783|emb|CAH12190.1| hypothetical protein lpp1039 [Legionella pneumophila str. Paris]
          Length = 168

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + +        +       +     +    SM       GD L+++ +I+ + G  ++
Sbjct: 58  ADDYIE--GYLDLNTKFIKHPSSTFVLQATGESMVEAGIFSGDWLLVDRSIEPSDGRIVI 115

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  + G  + L+  N  +    +       I  ++
Sbjct: 116 AAVN-GELTVKRLSKK-GGRVQLLPANPKFQPIDITEDSEMVIWGVV 160


>gi|332652440|ref|ZP_08418185.1| toxin-antitoxin system, antitoxin component, Xre family
           [Ruminococcaceae bacterium D16]
 gi|332517586|gb|EGJ47189.1| toxin-antitoxin system, antitoxin component, Xre family
           [Ruminococcaceae bacterium D16]
          Length = 275

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 56/240 (23%), Gaps = 30/240 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARK-----AGLDPTSFNKSKRFGIEGRN-------RWPSTE 56
           I + +    +R  LT   L          +     NK ++              R    E
Sbjct: 35  IGQRLSMERKRRGLTLEALRELLQNHGVEIQIQGLNKWEKGLTVPNAYQFIALCRILGIE 94

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                +         L  L                   +  +       +     G    
Sbjct: 95  DCMVGMEPVLLNDTGLRKLDEYKMDLIASGRYRPAPERYTETYIEMPVSTLAVSAGVGEF 154

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                               D   +    SM P+Y  G I+ +     +  G+  +    
Sbjct: 155 LDEGGFEMIRFPKSAVPGNADFGVRVNGDSMEPVYHDGQIVWVEKRDTLQPGEVGVFICN 214

Query: 177 TGDIVAKVLISRRG----------------RSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            G+   KV   +                  + I L+S N  Y    +  SD    + R++
Sbjct: 215 -GEGYLKVYDHQEPSEESKDDYVDSYGILHQQIILVSYNKLYSPKLISPSDTFFVVGRVI 273


>gi|218960805|ref|YP_001740580.1| hypothetical protein CLOAM0474 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729462|emb|CAO80373.1| hypothetical protein CLOAM0474 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 242

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 65/232 (28%), Gaps = 29/232 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I   +  + +   L       K G+   S ++ K        R+P  + + +++ A  
Sbjct: 4   NDIGSRLGMLIKAMKLKQYQFTEKFGISANSLDRYKNNE-----RFPDPQFLARLIDAGV 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------------- 109
                L            +   ++          G       F                 
Sbjct: 59  NVNWLLRGEGSMFILAPWELGDDVRTTKKVQIVDGKPVLVNDFDTTYVRTSIFPIVAEIS 118

Query: 110 ---PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
              P     +      +  P   I          +    SM P    GDI+++   I  +
Sbjct: 119 AGSPMEVPEDMEPAESVEVPTRYIPFGTDNYVAFRINGQSMEPQILHGDIVLIKKQITWD 178

Query: 167 --CGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSDIEWI 215
              G    ++  TG I  K +     R  + L  LN  Y ++ ++    +W+
Sbjct: 179 GLDGKICAVRYETG-ITLKRIQYDEARRGVALQPLNKDYRIEFIDADQSQWL 229


>gi|147724743|gb|ABQ45979.1| repressor [Linear cloning vector pJAZZ-OC]
          Length = 198

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 29/211 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +        LT   +A   G+        +R  +      PS E    +     + +
Sbjct: 5   GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDV-----MPSLEIGLSLAKCLRKPV 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                                 +LY   S        G   TG   +        +    
Sbjct: 60  QW--------------------ILYGTESDPDRVPVIGTTETGPDRDWQPGEPANTERFL 99

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +  Q       T    +   Y+ GD+++++S++ +  G+ +L+    G+I  + L    
Sbjct: 100 PFVSQRNTVYALTVGNQIQRNYQPGDVILVDSSLTLVPGEDVLVCDNNGEITIQRLARYD 159

Query: 190 GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            +   L S N       + + SD++++ +++
Sbjct: 160 EQHYYLDSANSQ---RVIHDKSDLQFVHQVV 187


>gi|83593475|ref|YP_427227.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576389|gb|ABC22940.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC
           11170]
          Length = 196

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 34/218 (15%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I    +   ++   LA+  G++ ++    +R     +  W   E + +IL  +  
Sbjct: 3   EIGKRIAEARKDQGMSQYALAKLLGVNQSTIAYYERGRNTPKP-WI-VEDLARILNVS-- 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                               +E      P  G  G                 +P   S  
Sbjct: 59  -------------AAFLLYGRERTDPLVPVVGRVGLGGQVTLAPAEPIGFTELPPGAS-- 103

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILI-----LNSAIQVNCGDRLLIKPRTGDIVA 182
                  ++      +  ++ P+YR GDI+      ++ + +   G   +++   G  + 
Sbjct: 104 -------SRTEALIVEGDALWPVYRAGDIVFFSEEDVHRSPEDLHGRDCVVRLADGTTLI 156

Query: 183 KVLISRRGRS-IDLMSLN-CCYPVDTVE-MSDIEWIAR 217
           K++   R ++   L S N        +E  + I W+ R
Sbjct: 157 KLIKRGRTKALFTLASYNAPDIEDIALEKAAPIRWVKR 194


>gi|15895107|ref|NP_348456.1| LexA repressor [Clostridium acetobutylicum ATCC 824]
 gi|25453102|sp|Q97I23|LEXA_CLOAB RecName: Full=LexA repressor
 gi|15024807|gb|AAK79796.1|AE007692_4 SOS regulatory protein LexA [Clostridium acetobutylicum ATCC 824]
 gi|325509246|gb|ADZ20882.1| LexA repressor [Clostridium acetobutylicum EA 2018]
          Length = 204

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 57/221 (25%), Gaps = 44/221 (19%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-----FNKSKRFGIEGR-NRWPSTES 57
             +I+E I +        PS   +  K GL  TS      ++ ++ G+  R    P    
Sbjct: 11  QSEIYEFIRQEVLDKGYPPSVREICAKVGLSSTSTVHGHLSRLEKKGLIRRDPTKPRAIE 70

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + K                                +   P          +    N  + 
Sbjct: 71  LIK-------------------------DPISKREMIDIPIVGKVQAGQPILAVENIDDY 105

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           + +P     +             K    SM       GD+ I+        GD ++    
Sbjct: 106 LTIPLNFVRNTN------DLFILKISGNSMIEAGIYDGDLAIIEKTNYAQNGDIVVALI- 158

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
             D   K     +   I L   N       V+  ++  I +
Sbjct: 159 ENDATIKRFFKEKD-KIRLQPENHTMDPIIVDNCEV--IGK 196


>gi|309776091|ref|ZP_07671082.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916042|gb|EFP61791.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53]
          Length = 198

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 34/218 (15%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + ++   +R N+T   +A + G++ ++ ++  +       R      I K+      
Sbjct: 2   QLKDLLNEYKKRMNVTNDYIAEQVGVNKSTVSRWMKEDT----RVMKPMVIEKLSYLLGI 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +  LL       +      K    LY   + +              +  V   +     
Sbjct: 58  DVESLLKGSDRFEKPVLGTAKAGYGLYAEENLT-------------GYEEVSKSDFYRG- 103

Query: 128 NGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                    D   +    SM        D++ +        G   +I     ++  K +I
Sbjct: 104 ---------DYFLRVCGDSMTGAHIHDQDLIYVKQCDDAESGTIAVILIANTEVTIKRVI 154

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219
            +    + L + N   P       +     ++ I ++L
Sbjct: 155 KK-DHLLILEAANPAVPARYFTYEEVQELPVKIIGKVL 191


>gi|327251986|gb|EGE63658.1| repressor protein CI [Escherichia coli STEC_7v]
          Length = 197

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 13/198 (6%)

Query: 31  AGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL-----AATNETICQLLDLPFSDGRTTEK 85
            G+  +                 +   + KIL       +     ++ ++  +       
Sbjct: 1   MGMGQSGVGALFNGINALNAYNAAL--LAKILNVSVEEFSPSIAREIYEMYEAVSMQPSL 58

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
           + +    ++          +   F  G+    V   +  S       ++       T   
Sbjct: 59  RSEYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPT--- 115

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
              P +  G +++++    V  GD  + +    +   K LI   G+   L  LN  YP+ 
Sbjct: 116 GSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMI 174

Query: 206 TVEMSDIEWIARILWASQ 223
                    + +++ ASQ
Sbjct: 175 PCN-ESCSVVGKVI-ASQ 190


>gi|319792666|ref|YP_004154306.1| phage repressor [Variovorax paradoxus EPS]
 gi|315595129|gb|ADU36195.1| putative phage repressor [Variovorax paradoxus EPS]
          Length = 243

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 20/229 (8%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESIFKILAATNETICQ 71
           R+ E+    P+  AR   +    F   +    +   G+ R    E+  +I  A  +    
Sbjct: 13  RLIEQERGGPAEAARIVNMSAAQFANLRDGAKDSKTGKPRGMRKETARRIEEAAKKPEGW 72

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-------FPTGNKWNTVGVPEIR 124
           L     +                       G              P G   +     E  
Sbjct: 73  LDQEHQASTVPPSPAPSVSENEVVIVQYEVGGGMDTRGKLLLEAEPPGIIKSWKVDREWL 132

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
             +   Y              SM  ++  GD L+++  +     + +       +   K+
Sbjct: 133 QLNVRSYTSLANLCIVTGFGPSMKGMFNPGDPLLMDRGVNRVDHEGVYFFRVGDEGYIKI 192

Query: 185 LISRR---GRSIDL--MSLNC-CYPVDTVEMSD--IEWIARI--LWASQ 223
           L       G    L  +S N   +P   +   +  +  I +I  +W S+
Sbjct: 193 LQRVPEFNGPGFVLRVISKNKDDFPPYDISPKNPHLHIIGKILTVWKSE 241


>gi|315058094|gb|ADT72423.1| hypothetical protein CJS3_0682 [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 142

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-------QDTRHKTQDTSMLP 149
              +  FF++     G+              +  +  +          +    Q  SM P
Sbjct: 9   DMINIPFFENVRASAGSGAYNDEESTQALGLSKSFLRECFGLYSFINLSVILGQGDSMTP 68

Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              +   L++        G+  + +    ++  K L  R    + L+S N  Y    +E 
Sbjct: 69  TLPENCYLLIQQGEVAE-GEICVTRI-EDELYVKRLQKRP--KLKLLSDNKAYEPINLEG 124

Query: 210 SDIEWIARIL 219
            + E + R++
Sbjct: 125 ENFEILGRVV 134


>gi|218442219|ref|YP_002380548.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC
           7424]
 gi|218174947|gb|ACK73680.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC
           7424]
          Length = 201

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 48/189 (25%), Gaps = 6/189 (3%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I      PS   + K +   +    Q            +  E +   + 
Sbjct: 8   QQELYDWLCEYIRTSQHAPSIRQMMKAMNLRSPAPIQSRLERLRSKGYIDWTEGKARTIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153
                + G    G    G         E +      +         +    SM   L   
Sbjct: 68  ILHQPAVGIPIYGSIAAGGLVEPFTDIEEKLDLTSFFQQP-NWFALRVTGDSMIEDLITD 126

Query: 154 GDILIL---NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++I+   +    +  G+ +  +        K      G  + L   N  Y    V + 
Sbjct: 127 GDMVIMRPLDPDENLKNGEIVAARVGGHGTTLKHYY-LEGEKVTLQPSNPNYRPIEVGLH 185

Query: 211 DIEWIARIL 219
           ++E    ++
Sbjct: 186 EVEIQGILV 194


>gi|309808149|ref|ZP_07702061.1| peptidase S24-like protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168618|gb|EFO70724.1| peptidase S24-like protein [Lactobacillus iners LactinV 01V1-a]
          Length = 177

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 4/111 (3%)

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
             G               +        D     +  SM P      I+  +    +  G+
Sbjct: 69  AAGEPIEYGDFDSEMIQTD---VPAKADKAIHIKGDSMEPKIASNSIIFYHEQPTLEIGE 125

Query: 170 RLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + +     +  K        + I L S+N  Y         +  + +++
Sbjct: 126 IGIFEINGSAVTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVV 176


>gi|126696785|ref|YP_001091671.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543828|gb|ABO18070.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9301]
          Length = 205

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 56/198 (28%), Gaps = 8/198 (4%)

Query: 29  RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88
            K  +  ++     +  +      PS   + + +   +    Q       +      +E 
Sbjct: 7   DKLTVAQSALYGWIKDYMREYQHSPSIRQMMQAMGLKSPAPIQSRLKHLQEKGYISWQEG 66

Query: 89  EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
           +   L        G    G    G   +T    +     + +   +           SM+
Sbjct: 67  KARTLQIIDEVLEGVPIMGSVAAGGLIDTYSDVQENLDISEVLK-KKDIFALSVNGDSMI 125

Query: 149 PL-YRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
                 GD++++     +  +  G  +           K    + GR I L + N  Y  
Sbjct: 126 DAFIAHGDMVLMEPILDSYSLRNGMIVSALVPGLGTTLKYFFKK-GRQISLEAANPAYEP 184

Query: 205 DTVEMSDIEWIARI--LW 220
             ++   +    ++  +W
Sbjct: 185 ILIDQDQVSIQGKLLAVW 202


>gi|323187631|gb|EFZ72938.1| peptidase S24-like family protein [Escherichia coli RN587/1]
 gi|325498373|gb|EGC96232.1| putative regulatory protein [Escherichia fergusonii ECD227]
          Length = 215

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 67/210 (31%), Gaps = 17/210 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79
           + LA   G+D  + ++ +     G+ +  + +++  I  +    I  L            
Sbjct: 4   ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDVKSNTVCK 59

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136
              +E   +   +             +G+   G+  + +   E R+ +            
Sbjct: 60  NSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +  SM P    GD++ ++ +I    GD + +      I  K L       + ++
Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDVSINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178

Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223
           S N  Y    +            ++L  SQ
Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207


>gi|317505418|ref|ZP_07963339.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663473|gb|EFV03219.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 256

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 28/236 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI   I+ ++++  +T   L +K G      +++   G + + +W   ES+  +      
Sbjct: 19  KILSRIEELSKQEGITIGALEKKIGASKGVLSRAIAKGTDIQAKW--IESL--VENYPMY 74

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---------------G 112
           +   LL       +   ++ +    L  P +                             
Sbjct: 75  STEWLLTGNGPMLKAATQESQVTAQLSTPTAKDRIPEAFRCLDALHFTHELIPLVSQKAA 134

Query: 113 NKWNTVGVPEIRSPHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDIL---ILNSAIQ 164
             +         S     Y I        D   +    SM P Y  GDI+   I++++  
Sbjct: 135 AGFGNADFAITESDVKEYYVIPKWRRQHVDFMIEVTGDSMQPKYNAGDIVGCTIIHNSGF 194

Query: 165 VNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +I  R   ++ K L+      S+  +S N  YP   +   +I  IA ++
Sbjct: 195 IQWNRPHVIATREQGLLIKRLMPGTTANSLSAVSENIQYPPFDIPKDEITGIALVI 250


>gi|258592052|emb|CBE68357.1| LexA repressor [NC10 bacterium 'Dutch sediment']
          Length = 197

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 58/185 (31%), Gaps = 7/185 (3%)

Query: 40  KSKRFGIEGRNR---WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +   F    + R    P+   I + +      +   L+     G  T   ++   +    
Sbjct: 9   QILNFIASYKARHGAPPTQREIARHVKIYIRGVQYHLERLERAGHLTRTPKRARAIDLRR 68

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155
              +      G    G    +    E   P    +    +    K Q  SM       GD
Sbjct: 69  EQRATLTPLLGRVTAGRPVLSDEHIEASYPLPLEWTGSGKAFLLKVQGDSMRDARIFDGD 128

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
           ++++ +  + + G+ ++      ++  K        ++ L   N  +    +E    ++ 
Sbjct: 129 LVLVTAQPEAHPGEIVV-AMIEDEVTVKRFQLDGA-TVILQPENEQFAPIRIENGERVKI 186

Query: 215 IARIL 219
           + +++
Sbjct: 187 LGKVI 191


>gi|220917338|ref|YP_002492642.1| SOS-response transcriptional repressor, LexA [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|254809085|sp|B8JA57|LEXA_ANAD2 RecName: Full=LexA repressor
 gi|219955192|gb|ACL65576.1| SOS-response transcriptional repressor, LexA [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 228

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 60/229 (26%), Gaps = 18/229 (7%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNK-SKRFGIEGRNRWPS 54
           M   +    ++   I    E H   P+   +     +  T+  N   K    +G      
Sbjct: 1   MEGLTDRQLEVLRFIASQIEDHGYPPTIREIGEALDIRSTNGVNDHLKALERKGYLSRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            +S   I  +         +   +         +    +   P          +      
Sbjct: 61  VKSRALIPTSAAREALGGGETGSNVVPLVRGPARPGSRMIEIPIVGRVAAGMPILAQERV 120

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLI 173
            +TV V         +     +    + Q  SM+      GD + +   +  + G+ ++ 
Sbjct: 121 EDTVQVDA------FLLGTNKKVYGLRVQGDSMIGDGILPGDYVFVKKQLNADDGEIVVA 174

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
                +   K +    G  +     N       V  SD      +  ++
Sbjct: 175 MID-DEATVKRVYF-EGDRVRFQPSNPRMAPIYVRHSDFRSTMILGVVV 221


>gi|9630498|ref|NP_046933.1| CB [Enterobacteria phage N15]
 gi|1184742|gb|AAB81655.1| repressor protein [Enterobacteria phage N15]
 gi|3192717|gb|AAC19070.1| gp38 [Enterobacteria phage N15]
 gi|89158281|gb|ABD62892.1| cB [Cloning vector pJAZZ-KA]
 gi|124491097|gb|ABN12903.1| CB [Cloning vector pN15E4]
 gi|124491104|gb|ABN12909.1| CB [Cloning vector pN15E6]
 gi|205318621|gb|ACI02337.1| CB [Linear cloning vector pJAZZ-OK]
 gi|269974867|gb|ACZ55231.1| phage repressor cB [Cloning vector pJAZZ-OCmin]
          Length = 202

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 29/211 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +        LT   +A   G+        +R  +      PS E    +     + +
Sbjct: 9   GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDV-----MPSLEIGLSLAKCLRKPV 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                                 +LY   S        G   TG   +        +    
Sbjct: 64  QW--------------------ILYGTESDPDRVPVIGTTETGPDRDWQPGEPANTERFL 103

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +  Q       T    +   Y+ GD+++++S++ +  G+ +L+    G+I  + L    
Sbjct: 104 PFVSQRNTVYALTVGNQIQRNYQPGDVILVDSSLTLVPGEDVLVCDNNGEITIQRLARYD 163

Query: 190 GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            +   L S N       + + SD++++ +++
Sbjct: 164 EQHYYLDSANSQ---RVIHDKSDLQFVHQVV 191


>gi|226940501|ref|YP_002795575.1| UmuD protein [Laribacter hongkongensis HLHK9]
 gi|226715428|gb|ACO74566.1| UmuD protein [Laribacter hongkongensis HLHK9]
          Length = 206

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLL 172
             + V   +    ++ +          + +  SM       GDIL+++ +   + GD ++
Sbjct: 97  ADDYVE--DTLDLNHYLIDDAPSTFLVRAKGESMTGAHVFDGDILVVDKSRTPSSGDIVV 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K L  + G  + L + N  YP           I  ++
Sbjct: 155 AAI-EGEFTVKRLQRQ-GGRVILKAANPDYPDIVPSYEQELVIWGVV 199


>gi|320198552|gb|EFW73152.1| regulatory protein cI [Escherichia coli EC4100B]
          Length = 215

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 17/210 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79
           + LA   G+D  + ++ +     G+ +  + +++  I  +    I  L            
Sbjct: 4   ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDVKSNTVCK 59

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136
               E   +   +             +G+   G+  + +   E R+ +            
Sbjct: 60  NSIGEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +  SM P    GD++ ++ +I    GD + +      I  K L       + ++
Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178

Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223
           S N  Y    +            ++L  SQ
Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207


>gi|331269497|ref|YP_004395989.1| SOS-response transcriptional repressor, LexA [Clostridium botulinum
           BKT015925]
 gi|329126047|gb|AEB75992.1| SOS-response transcriptional repressor, LexA [Clostridium botulinum
           BKT015925]
          Length = 209

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 57/218 (26%), Gaps = 36/218 (16%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFK 60
              +I+E I     +    PS   + +  GL  TS   +   +   +G  R  ST+    
Sbjct: 15  KQIEIYEFIKTQILQKGYPPSVREICKGVGLSSTSSVHSHLSKLEKKGLIRRDSTK---- 70

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                                   K+      +   P          +    N  +T  +
Sbjct: 71  -----------------PRTIEILKEPMIRKEMVNIPIVGKVTAGIPILAVENIEDTFPI 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                P N            K    SM       GD  I+      + G+ ++      +
Sbjct: 114 SLNFIPKN------KDLFILKVSGESMIEAGILDGDFAIIEKVDYASDGEIVVALI-ENE 166

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
              K     +   I L   N       V+  D + + +
Sbjct: 167 ATLKRFFKEKD-HIRLQPENQTMEPIIVK--DCKILGK 201


>gi|325272250|ref|ZP_08138668.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324102622|gb|EGC00051.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 142

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
             P G         E     + ++ I+       K +  SM       GD++I++   + 
Sbjct: 22  HVPAGFPSPAADHLEGHISLDELFDIRAPHVYLVKVEGDSMQGAGIYSGDLVIVDRGREA 81

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             GD ++      + V K L  R    + L S N  YP   +   D   +  ++  S
Sbjct: 82  EHGDIVIAAVNC-EPVCKRLHRR-DGVVILKSENPAYPARYIMEGDDFVVWGVVRYS 136


>gi|330830140|ref|YP_004393092.1| phage repressor [Aeromonas veronii B565]
 gi|328805276|gb|AEB50475.1| Phage repressor [Aeromonas veronii B565]
          Length = 144

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 14/138 (10%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
               K IP+L +  +G+                           +    I         +
Sbjct: 1   MLPGKRIPILSYVQAGNWREMCEQ---------ATTFDGNVEFVSASGEIGPFGFGLWLR 51

Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-----RGRSIDLMSL 198
             SMLP +++GD++I++       GD ++ K  + +   K    R          +L+ L
Sbjct: 52  GDSMLPQFKEGDLIIVDPDEAPQPGDYVVAKNGSNEATFKKYRPRGIDENGQEVFELVPL 111

Query: 199 NCCYPVDTVEMSDIEWIA 216
           N  YP    +   I+ I 
Sbjct: 112 NEDYPTMHSDRQHIQIIG 129


>gi|254427485|ref|ZP_05041192.1| LexA repressor [Alcanivorax sp. DG881]
 gi|196193654|gb|EDX88613.1| LexA repressor [Alcanivorax sp. DG881]
          Length = 204

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 55/214 (25%), Gaps = 33/214 (15%)

Query: 6   HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +++ + I        +  T + +A   G          +       R    +   K+  
Sbjct: 9   QQQVLDCIRECLSDSGMAPTRAEIADIMGFQS-------KNAASDHLRALERKGYIKL-- 59

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                 + + I LL     G       G    G     +   E 
Sbjct: 60  -------------------HSDRSRGIQLLDNAYWGEEELPIVGRVAAGVPIEAIENVER 100

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P       Q      K Q  SM+      GD++ +  +     G+ ++ +    ++  
Sbjct: 101 TVPVPQGLFKQRPTYLLKVQGDSMVDAGIFDGDLIAVRKSNVARTGEIVVARID-EEVTV 159

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           K L      S  L+  N  Y    V    +    
Sbjct: 160 KTL-KLNKSSATLLPANEAYEPIKVPADQLIIEG 192


>gi|291525626|emb|CBK91213.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Eubacterium rectale DSM 17629]
          Length = 173

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
                     G     V  P+     +     +      +    SM P +  G I  +  
Sbjct: 44  IDIFENAVSAGTGSFLVDGPKETVRIDESILPEDTTFGVRISGDSMEPEFHDGQIAWVLQ 103

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              V  G+  +     G+   K L + +   I L+SLN  Y    V E   ++   ++L
Sbjct: 104 QESVANGEIGIFALN-GEAYIKKLQNDKDG-IFLISLNEKYTPIKVGENDRLDIFGKVL 160


>gi|262192231|ref|ZP_06050389.1| SOS-response repressor and protease LexA [Vibrio cholerae CT
           5369-93]
 gi|297581861|ref|ZP_06943782.1| LexA repressor [Vibrio cholerae RC385]
 gi|262031904|gb|EEY50484.1| SOS-response repressor and protease LexA [Vibrio cholerae CT
           5369-93]
 gi|297533955|gb|EFH72795.1| LexA repressor [Vibrio cholerae RC385]
          Length = 209

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +A++ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +             +       +      +           G    G    G    
Sbjct: 46  HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 97  AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G  + L + N  +    V+++
Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189


>gi|70731140|ref|YP_260881.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345439|gb|AAY93045.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
           Pf-5]
          Length = 262

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 70/246 (28%), Gaps = 38/246 (15%)

Query: 7   KKIWEAIDRMAERHN--LTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           K I+E     A+     LT + +A   G    ++F++     +       + E++ K+  
Sbjct: 19  KAIYEQRKSAAKAAGRNLTQADVAEACGWSGQSAFSQYATGKVP-----LNVEALLKLAK 73

Query: 64  ATNETICQLLDL-----PFSDGRTTEKKEKEIPLLYFPPSGS-------GGFFDSGVFPT 111
           A N    ++                +   K   +  +  +           F        
Sbjct: 74  ALNFDASEVSSRLISTVANVQQERIQPDIKLGTIETWDDATPLPDDEVYVPFLREVELAA 133

Query: 112 GNKWNTVGVPEIR------SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
           G+    +   +        S         +       +  SM P+ R G  + +N+    
Sbjct: 134 GSGRFVIEESDTAKLRFFKSDLRRNNVQFSNAKCVIVRGNSMFPVLRDGATVGVNTGKNS 193

Query: 166 NCGDRL----LIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV-----EMSDIEWI 215
             GD +          G +  K +       + L S N   +P +       +   I  +
Sbjct: 194 L-GDIVDGDLYAINHNGQLRVKQVYRLPTG-LRLRSFNRDEHPDEDYTFAEAQEQQISIL 251

Query: 216 ARILWA 221
             + W 
Sbjct: 252 GHVFWW 257


>gi|15640124|ref|NP_229751.1| LexA repressor [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587645|ref|ZP_01677408.1| LexA repressor [Vibrio cholerae 2740-80]
 gi|121727782|ref|ZP_01680858.1| LexA repressor [Vibrio cholerae V52]
 gi|147674841|ref|YP_001218323.1| LexA repressor [Vibrio cholerae O395]
 gi|153214612|ref|ZP_01949488.1| LexA repressor [Vibrio cholerae 1587]
 gi|153801685|ref|ZP_01956271.1| LexA repressor [Vibrio cholerae MZO-3]
 gi|153818212|ref|ZP_01970879.1| LexA repressor [Vibrio cholerae NCTC 8457]
 gi|153822131|ref|ZP_01974798.1| LexA repressor [Vibrio cholerae B33]
 gi|153826622|ref|ZP_01979289.1| LexA repressor [Vibrio cholerae MZO-2]
 gi|153829104|ref|ZP_01981771.1| LexA repressor [Vibrio cholerae 623-39]
 gi|227080328|ref|YP_002808879.1| LexA repressor [Vibrio cholerae M66-2]
 gi|229508375|ref|ZP_04397879.1| SOS-response repressor and protease LexA [Vibrio cholerae BX
           330286]
 gi|229508943|ref|ZP_04398433.1| SOS-response repressor and protease LexA [Vibrio cholerae B33]
 gi|229515868|ref|ZP_04405326.1| SOS-response repressor and protease LexA [Vibrio cholerae TMA 21]
 gi|229517057|ref|ZP_04406503.1| SOS-response repressor and protease LexA [Vibrio cholerae RC9]
 gi|229520109|ref|ZP_04409537.1| SOS-response repressor and protease LexA [Vibrio cholerae TM
           11079-80]
 gi|229524994|ref|ZP_04414399.1| SOS-response repressor and protease LexA [Vibrio cholerae bv.
           albensis VL426]
 gi|229527160|ref|ZP_04416554.1| SOS-response repressor and protease LexA [Vibrio cholerae 12129(1)]
 gi|229606650|ref|YP_002877298.1| LexA repressor [Vibrio cholerae MJ-1236]
 gi|254851478|ref|ZP_05240828.1| LexA repressor [Vibrio cholerae MO10]
 gi|255743948|ref|ZP_05417903.1| SOS-response repressor and protease LexA [Vibrio cholera CIRS 101]
 gi|262151323|ref|ZP_06028457.1| SOS-response repressor and protease LexA [Vibrio cholerae INDRE
           91/1]
 gi|262167242|ref|ZP_06034953.1| SOS-response repressor and protease LexA [Vibrio cholerae RC27]
 gi|298501132|ref|ZP_07010932.1| LexA repressor [Vibrio cholerae MAK 757]
 gi|13431643|sp|Q9KVP9|LEXA_VIBCH RecName: Full=LexA repressor
 gi|172047512|sp|A5F4F6|LEXA_VIBC3 RecName: Full=LexA repressor
 gi|254809109|sp|C3LPT4|LEXA_VIBCM RecName: Full=LexA repressor
 gi|9654490|gb|AAF93270.1| LexA repressor [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548086|gb|EAX58161.1| LexA repressor [Vibrio cholerae 2740-80]
 gi|121629906|gb|EAX62318.1| LexA repressor [Vibrio cholerae V52]
 gi|124115218|gb|EAY34038.1| LexA repressor [Vibrio cholerae 1587]
 gi|124122778|gb|EAY41521.1| LexA repressor [Vibrio cholerae MZO-3]
 gi|126511241|gb|EAZ73835.1| LexA repressor [Vibrio cholerae NCTC 8457]
 gi|126520337|gb|EAZ77560.1| LexA repressor [Vibrio cholerae B33]
 gi|146316724|gb|ABQ21263.1| LexA repressor [Vibrio cholerae O395]
 gi|148875432|gb|EDL73567.1| LexA repressor [Vibrio cholerae 623-39]
 gi|149739560|gb|EDM53784.1| LexA repressor [Vibrio cholerae MZO-2]
 gi|227008216|gb|ACP04428.1| LexA repressor [Vibrio cholerae M66-2]
 gi|227011906|gb|ACP08116.1| LexA repressor [Vibrio cholerae O395]
 gi|229335391|gb|EEO00874.1| SOS-response repressor and protease LexA [Vibrio cholerae 12129(1)]
 gi|229338575|gb|EEO03592.1| SOS-response repressor and protease LexA [Vibrio cholerae bv.
           albensis VL426]
 gi|229342897|gb|EEO07887.1| SOS-response repressor and protease LexA [Vibrio cholerae TM
           11079-80]
 gi|229346120|gb|EEO11092.1| SOS-response repressor and protease LexA [Vibrio cholerae RC9]
 gi|229347131|gb|EEO12092.1| SOS-response repressor and protease LexA [Vibrio cholerae TMA 21]
 gi|229354060|gb|EEO18993.1| SOS-response repressor and protease LexA [Vibrio cholerae B33]
 gi|229354648|gb|EEO19570.1| SOS-response repressor and protease LexA [Vibrio cholerae BX
           330286]
 gi|229369305|gb|ACQ59728.1| SOS-response repressor and protease LexA [Vibrio cholerae MJ-1236]
 gi|254847183|gb|EET25597.1| LexA repressor [Vibrio cholerae MO10]
 gi|255738431|gb|EET93821.1| SOS-response repressor and protease LexA [Vibrio cholera CIRS 101]
 gi|262024306|gb|EEY42996.1| SOS-response repressor and protease LexA [Vibrio cholerae RC27]
 gi|262030862|gb|EEY49492.1| SOS-response repressor and protease LexA [Vibrio cholerae INDRE
           91/1]
 gi|297540166|gb|EFH76227.1| LexA repressor [Vibrio cholerae MAK 757]
 gi|327482999|gb|AEA77406.1| SOS-response repressor and protease LexA [Vibrio cholerae
           LMA3894-4]
          Length = 209

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +A++ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +             +       +      +           G    G    G    
Sbjct: 46  HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 97  AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G  + L + N  +    V+++
Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189


>gi|294788391|ref|ZP_06753634.1| repressor protein C2 [Simonsiella muelleri ATCC 29453]
 gi|294483822|gb|EFG31506.1| repressor protein C2 [Simonsiella muelleri ATCC 29453]
          Length = 220

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 60/212 (28%), Gaps = 10/212 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  +  +H L  + LA  A  +  S  +          R P  +++          +
Sbjct: 10  GKNLIYLMNKHGLNVTSLANAAKANQPSLFRIVNGES----RDPREDTLKPYAEYFGIEV 65

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--FDSGVFPTGNKWNTVGVPEIRSPH 127
             L     +    +  +         P         + +      +           S  
Sbjct: 66  ADLRTKDLTSTAHSNVEPVINLHGRIPVIEWTSIKDWQNMDINIKDIKEWRSTTREHSSK 125

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                ++           S    +  GDI++++   ++  G  ++ +      +    + 
Sbjct: 126 TFALRVKGITMVRYGHKES----FEDGDIILVDPEREIINGSLVIAQIGNETELVFRKLY 181

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                + L +LN  +    +E+ D   I  ++
Sbjct: 182 IENGKMFLHALNPNWTEPLIELKDKSMIKGVV 213


>gi|70727393|ref|YP_254309.1| hypothetical protein SH2394 [Staphylococcus haemolyticus JCSC1435]
 gi|68448119|dbj|BAE05703.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 224

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 76/229 (33%), Gaps = 26/229 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARK------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              I ++ ++  +T   L+        A     SF K K    E     P  +++ ++  
Sbjct: 4   GSRIKKLRKQKGMTLQQLSDDLHEQFPAKDKRNSFTKGKLSNWENDKSEPIAKTVSQLAT 63

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               ++  L+ L        +  +      Y   S                   + VP+I
Sbjct: 64  YFGVSMDYLIGLEDDIVPIEKIDKYYQVPYYGQVSAGNFETVEVDTK------ELEVPDI 117

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTG 178
                       +    +    SM  +   G  +I++        ++N  D L+++   G
Sbjct: 118 AFNGRN----PKECIALQVNGDSMNKVLSNGSYIIIHDYRRNQDYRLNNNDILVLR-LGG 172

Query: 179 DIVAKVLISRRGR-SIDLMSLNCCYPVDTVE---MSDIEWIARILWASQ 223
           +   K +     +  +D +S +  +  +T +     +IE I ++++  Q
Sbjct: 173 EYTVKRVRRTETKLHLDPVSYSDEFKTNTYDIDSTDEIEVIGKVIYNYQ 221


>gi|299529267|ref|ZP_07042709.1| peptidase S24, S26A and S26B [Comamonas testosteroni S44]
 gi|298722745|gb|EFI63660.1| peptidase S24, S26A and S26B [Comamonas testosteroni S44]
          Length = 120

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%)

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
           G     +            +    Q    + +  SM P YR G+ +++  +I+   G  +
Sbjct: 3   GGDDGYLVQDTTPDGWVEYWTGDPQAYALRIKGDSMHPRYRAGEFVVVTPSIEAQPGRDV 62

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           ++K   G  + K L   RG  I L+S+N  Y   T+   D+E + R+
Sbjct: 63  VVKLHDGKCLLKELNWIRGDEIQLLSINNGYAPMTISKEDVECVCRV 109


>gi|262404835|ref|ZP_06081389.1| SOS-response repressor and protease LexA [Vibrio sp. RC586]
 gi|262348919|gb|EEY98058.1| SOS-response repressor and protease LexA [Vibrio sp. RC586]
          Length = 209

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +A++ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +             +       +      +           G    G    G    
Sbjct: 46  HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 97  AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G  + L + N  +    V+++
Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189


>gi|256827991|ref|YP_003156719.1| peptidase S24 and S26 domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577167|gb|ACU88303.1| peptidase S24 and S26 domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 153

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        +  +          +    SM       GD+L+++ + Q   G  ++
Sbjct: 44  ADDYIE--TALDLNTYLIRNPAATFMVRVSGDSMTGAGISDGDVLVVDRSEQPAHGKIVV 101

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L+ + G+++ L   N CY   TV       +  ++
Sbjct: 102 AVLD-GELTVKRLVMKNGQTL-LAPENPCYQPITVTEGQDLHVWGVV 146


>gi|15808003|ref|NP_285667.1| lexA repressor [Deinococcus radiodurans R1]
 gi|6460733|gb|AAF12438.1|AE001863_63 lexA repressor [Deinococcus radiodurans R1]
          Length = 220

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 34/218 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           + + I +A   +      T   +A++ G+   + ++                 + K+   
Sbjct: 18  TRRSILQA--TLRLGAGATAGQVAQEVGITKQAISQ-------------QVNILRKL--- 59

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                               +            +   G    G    G        PE  
Sbjct: 60  ------------GYLQPAETRYGPLQVTDRARAALGEGLPIYGQIAAGIPALAEQSPEDF 107

Query: 125 SPH-NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR-LLIKPRTGDIV 181
           +P    +  ++  D   + +  SM  +    GD +++  A +V+ G+  +++ P      
Sbjct: 108 TPSIEALLGLKAGDFLLRVRGESMTGIGVMDGDYVVVRPAPEVHDGEVAVVLVPGDNAAT 167

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K L    G+ I L S N   P  +     ++   R++
Sbjct: 168 LKRLY-HFGQDILLTSENPAMPRLSFPAEQVQVQGRMV 204


>gi|194437246|ref|ZP_03069344.1| regulatory protein [Escherichia coli 101-1]
 gi|194423802|gb|EDX39791.1| regulatory protein [Escherichia coli 101-1]
          Length = 215

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 67/210 (31%), Gaps = 17/210 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS-----D 79
           + LA   G+D  + ++ +     G+ +  + +++  I  +    I  L            
Sbjct: 4   ADLAEAIGVDAANISRLE----TGKQKQFTEQALSNIARSLGVDIADLFTSDLKSNTVCK 59

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH---NGIYAIQTQ 136
              +E   +   +             +G+   G+  + +   E R+ +            
Sbjct: 60  NSISEDVAQVKDVFRIEMLDVSASAGNGLIQGGDVIDVIHAIEYRTDNAVSMFGGRPANH 119

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +  SM P    GD++ ++ +I    GD + +      I  K L       + ++
Sbjct: 120 IKVINVRGDSMCPTIEPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPD-KLLVI 178

Query: 197 SLNCCYPVDTVEMS---DIEWIARILWASQ 223
           S N  Y    +            ++L  SQ
Sbjct: 179 SDNQIYREWGITSENEHRFMVFGKVL-ISQ 207


>gi|146310671|ref|YP_001175745.1| putative phage repressor [Enterobacter sp. 638]
 gi|145317547|gb|ABP59694.1| putative phage repressor [Enterobacter sp. 638]
          Length = 218

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 14/219 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S   +W+ ++  A         L+R   + P      +      + R  S      I   
Sbjct: 9   SEPGVWKWLNAAAIPDQTNILALSRWLNVRPEWLEYGRNQAANDKEREAS------IPPE 62

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           +     +  D          +      + +   +G  G  D   +        +   +  
Sbjct: 63  SEWGSVEAWDDSTPVSDDEVEVPFFKDIEFACGAGRTGDEDYNGYK-------LRFSKST 115

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
               G             +  SM P    G  + +N+  +     ++      G    K+
Sbjct: 116 LRRIGASTDGHSIICFPARGNSMEPNIPDGTTVAVNTEDKKIIDGKMYAISEDGWKRIKL 175

Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
           L      ++ + S N   +P +   + +IE I R+ W S
Sbjct: 176 LYRTGPETVSIRSYNAAEHPPEEKPLGNIEVIGRVFWWS 214


>gi|27364582|ref|NP_760110.1| LexA repressor [Vibrio vulnificus CMCP6]
 gi|37678307|ref|NP_932916.1| LexA repressor [Vibrio vulnificus YJ016]
 gi|320154986|ref|YP_004187365.1| SOS-response repressor and protease LexA [Vibrio vulnificus
           MO6-24/O]
 gi|29427708|sp|Q8DD47|LEXA_VIBVU RecName: Full=LexA repressor
 gi|44888093|sp|Q7MQ85|LEXA_VIBVY RecName: Full=LexA repressor
 gi|27360701|gb|AAO09637.1| LexA repressor [Vibrio vulnificus CMCP6]
 gi|37197046|dbj|BAC92887.1| SOS-response transcriptional repressor [Vibrio vulnificus YJ016]
 gi|319930298|gb|ADV85162.1| SOS-response repressor and protease LexA [Vibrio vulnificus
           MO6-24/O]
          Length = 207

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 33/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIEVTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                 +      +   I L     +   G    G    G    
Sbjct: 46  HLKALARK-----------QVIEIVPGASRGIRILLEEEAANDEPGLPLIGRVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E+    +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 95  AQEHVEMHYQVDPSMFRPQADFLLRVHGESMKDIGIMDGDLLAVHKTQDVRNGQVVVAR- 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G ++ L + N  +    V++
Sbjct: 154 VEDDVTVKRLERK-GSTVLLHAENEEFAPIEVDL 186


>gi|146309913|ref|YP_001174987.1| LexA repressor [Enterobacter sp. 638]
 gi|166990801|sp|A4W5F6|LEXA_ENT38 RecName: Full=LexA repressor
 gi|145316789|gb|ABP58936.1| SOS-response transcriptional repressor, LexA [Enterobacter sp. 638]
          Length = 202

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVLEIVSGASRGIRLLVEEETGIPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPGMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G ++ L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNTVQLLPENSEFSPIVVDLRE 183


>gi|254242224|ref|ZP_04935546.1| hypothetical protein PA2G_02958 [Pseudomonas aeruginosa 2192]
 gi|126195602|gb|EAZ59665.1| hypothetical protein PA2G_02958 [Pseudomonas aeruginosa 2192]
          Length = 253

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 21/198 (10%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86
           +A   G+     +  +    +  +R+ ++    + +                  + + +K
Sbjct: 63  IADAFGVR---VDWLEHGQGDKNSRYMTSNRTEEAVRNLVAGRAGDYGNVQPTAQPS-RK 118

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
           +K  PL+ +  +G+         P G+    +                      +    S
Sbjct: 119 KKGYPLISWVAAGAWAESHDNFQP-GDAEEWIESEAKAGE---------NGYWLEVHGDS 168

Query: 147 MLPLYRKGDILILNSAI-QVNCGDRLLIKPR----TGDIVAKVLISRRGRSIDLMSLNCC 201
           MLP + +G  +++      +  G   +          +   K  +   GR   LM LN  
Sbjct: 169 MLPSFPEGTRILVQPEGFDLVSGKFYVALLYEPGKQRETTFKQYVRDAGREY-LMPLNKD 227

Query: 202 YPVDTVEMSDIEWIARIL 219
           Y    V   ++  I R++
Sbjct: 228 YKPLQVT-ENVRVIGRVI 244


>gi|332141670|ref|YP_004427408.1| LexA repressor [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143404|ref|YP_004429142.1| LexA repressor [Alteromonas macleodii str. 'Deep ecotype']
 gi|229495162|sp|B4S1W7|LEXA_ALTMD RecName: Full=LexA repressor
 gi|327551692|gb|AEA98410.1| LexA repressor [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553426|gb|AEB00145.1| LexA repressor [Alteromonas macleodii str. 'Deep ecotype']
          Length = 208

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 32/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ E I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MRPLTARQTEVLELIKTTMQETGMPPTRAEIARQLGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                     T +  K    L        G    G    G    
Sbjct: 46  HLKALARK----------GVIEILPGTSRGIKLNIPLDNEAEEEEGLPLIGRVAAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V+ G  ++ + 
Sbjct: 96  AQEHVESHYKVDPALFQPQADFLLRVNGMSMKDIGILDGDLLAVHRTTDVHNGQVVVARV 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  R GR + L + N  +    V+++
Sbjct: 156 D-EDVTVKRLEKR-GREVLLHAENEEFSPIKVDLA 188


>gi|289165200|ref|YP_003455338.1| SOS (Error prone) mutagenesis protein UmuD [Legionella longbeachae
           NSW150]
 gi|288858373|emb|CBJ12241.1| putative SOS (Error prone) mutagenesis protein UmuD [Legionella
           longbeachae NSW150]
          Length = 168

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 9/108 (8%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + +        +       +     +    SM       GD L+++ +I+   G  ++
Sbjct: 58  ADDYIE--GYLDLNTKFIKHPSATFVLQVMGDSMVEAGIFSGDWLLVDRSIEATDGRIVI 115

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
                G++  K L  +    I L+  N  +    +   D E    ++W
Sbjct: 116 AAVN-GELTVKRLSKKE-GKIQLLPANPKFKPIDIT-QDCEM---VVW 157


>gi|257464911|ref|ZP_05629282.1| LexA repressor [Actinobacillus minor 202]
 gi|257450571|gb|EEV24614.1| LexA repressor [Actinobacillus minor 202]
          Length = 210

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 62/218 (28%), Gaps = 34/218 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I+E +        + P+   +AR+ G                     + E +  +  
Sbjct: 10  QQEIFEFVKNHITTTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                              T +  + +       +   G    G    G     +   E 
Sbjct: 55  K----------GYIEMLSGTSRGIRILVNDETEAANDDGLPLIGKVAAGTPIEAIEHIEN 104

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG       D   +    SM  +    GD+L ++       G  ++ +    ++  
Sbjct: 105 YYPVNGAMFSPAADYLLRVNGNSMEKIGILDGDLLAVHKTNYAKNGQVIVARVD-DEVTV 163

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       V+      +IE IA
Sbjct: 164 KRLEKK-GDLIYLHPENDELEAIVVDPRIEYIEIEGIA 200


>gi|116751196|ref|YP_847883.1| SOS-response transcriptional repressor LexA [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700260|gb|ABK19448.1| SOS-response transcriptional repressor, LexA [Syntrophobacter
           fumaroxidans MPOB]
          Length = 207

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 11/196 (5%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           L   +     RF  + +   P+ + + +I   +  +    ++     G    +  K   +
Sbjct: 12  LQRKTLEAICRFV-DAKGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGI 70

Query: 93  -----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
                     +        G+   G           +           Q    +    SM
Sbjct: 71  AVARRPSEMAASLVSVPVVGMVAAGCPILAEENVTGQVLVESDVVRSGQHFALRAVGDSM 130

Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           +      GD++I+        GD ++      +   K L   +   I+L+  N       
Sbjct: 131 VGAGINDGDLIIVRQQPIAEDGDIVVALLN-NEATVKRL-KIKDELIELVPENPEVRKIR 188

Query: 207 V-EMSDIEWIARIL-W 220
           +    D+  + +++ W
Sbjct: 189 IRPEDDLRVLGKVVGW 204


>gi|330943671|gb|EGH45975.1| LexA repressor [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 126

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G         E     N  +   + +   +    SM  +    GD+L +++  +   
Sbjct: 10  VAAGAPILAQQHIEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARN 69

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           G  ++ +    ++  K      G  + L++ N  +    V++ D
Sbjct: 70  GQIVVARI-GDEVTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 111


>gi|258626612|ref|ZP_05721442.1| LexA repressor [Vibrio mimicus VM603]
 gi|258581116|gb|EEW06035.1| LexA repressor [Vibrio mimicus VM603]
          Length = 209

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +A++ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +             +       +      +           G    G    G    
Sbjct: 46  HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAEAGLPLIGRVAAGEPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 97  AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G  + L + N  +    V+++
Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189


>gi|322389640|ref|ZP_08063188.1| phage transcriptional repressor [Streptococcus parasanguinis ATCC
           903]
 gi|321143639|gb|EFX39069.1| phage transcriptional repressor [Streptococcus parasanguinis ATCC
           903]
          Length = 254

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 70/228 (30%), Gaps = 24/228 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  + +        L+R  G+  ++     +            E++ KI A     
Sbjct: 22  ISEKIRELLKEQGKKQIELSRITGIPASTLTGYVKGTSLPVP-----ENLEKIAAFFQVA 76

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--------------SGVFPTGNK 114
           +  +     +D    + + + +       +                        + + + 
Sbjct: 77  VADIDPRLRNDFVVIDSEIERLYKQLDEGNQENLLSYGKSLLTHQKERQKIEKQYHSYSV 136

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDT--RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +++    + +   + ++  Q             S+ P Y KG ++++        G  + 
Sbjct: 137 YDSFAAYQNQKQADIVWFDQKIPYDLAFWIHTDSLEPKYEKGAVVLIKQTYYDQAG-AIY 195

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                G  + K +       I L+SLN  Y    + + +    I +++
Sbjct: 196 AIDFDGQTLIKRVFREANG-IRLVSLNKKYSDQIIPLDEEPGVIGKVI 242


>gi|227113709|ref|ZP_03827365.1| LexA repressor [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 202

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKVLTARQQQVYDLIRDHIAQTGMPPTRAEIAQQLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEETGIPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQEHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTEDVRNGQIVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G ++ L++ N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNTVHLLAENEEFAPIVVDLRQ 183


>gi|167771331|ref|ZP_02443384.1| hypothetical protein ANACOL_02689 [Anaerotruncus colihominis DSM
           17241]
 gi|167666582|gb|EDS10712.1| hypothetical protein ANACOL_02689 [Anaerotruncus colihominis DSM
           17241]
          Length = 250

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 44/168 (26%), Gaps = 6/168 (3%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           PS   I   L   + +          +    E++      +  P          G    G
Sbjct: 82  PSVREICARLGMKSTSTAHHYLKSLEEKGYIEREGSLNRAIRLPCGNVTRVPLVGTVTAG 141

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRL 171
                V   E   P   I          + + +SM+      GDI+I         GD +
Sbjct: 142 QPILAVESIEAYLPVP-IRGDAKDFFALRVRGSSMIKAAILDGDIVIAQRRDTAEDGDIV 200

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +      +   K     + +   L   N            +  + +++
Sbjct: 201 VALID-DEATVKRFFREK-KRYRLQPENDAMEPIY--TDHVTILGQVV 244


>gi|300714896|ref|YP_003739699.1| LexA repressor [Erwinia billingiae Eb661]
 gi|299060732|emb|CAX57839.1| LexA repressor [Erwinia billingiae Eb661]
          Length = 202

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 46/176 (26%), Gaps = 3/176 (1%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  I      P+   I   L   +    +      +     E        + 
Sbjct: 8   QQQVYDLIRDHINQTGMPPTRAEIAAQLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G         E     +        D   +    SM  +    
Sbjct: 68  LMMEEEEGLPLIGRVAAGEPLLAEEHIEGHYKVDPELFKPGADFLLRVSGMSMKDIGIMD 127

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           GD+L ++    V  G  ++ +    ++  K L  + G  + L+  N  +    V++
Sbjct: 128 GDLLAVHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GNIVHLLPENGEFQPIVVDL 181


>gi|258623122|ref|ZP_05718134.1| LexA repressor [Vibrio mimicus VM573]
 gi|262163660|ref|ZP_06031401.1| SOS-response repressor and protease LexA [Vibrio mimicus VM223]
 gi|262172856|ref|ZP_06040534.1| SOS-response repressor and protease LexA [Vibrio mimicus MB-451]
 gi|258584605|gb|EEW09342.1| LexA repressor [Vibrio mimicus VM573]
 gi|261893932|gb|EEY39918.1| SOS-response repressor and protease LexA [Vibrio mimicus MB-451]
 gi|262027876|gb|EEY46540.1| SOS-response repressor and protease LexA [Vibrio mimicus VM223]
          Length = 209

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +A++ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +             +       +      I           G    G    G    
Sbjct: 46  HLKALARK---------QVIEMVPGASRGIRILIDNAANEEEAETGLPLIGRVAAGEPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 97  AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G  + L + N  +    V+++
Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189


>gi|6685589|sp|O32506|LEXA_DEIRA RecName: Full=LexA repressor
 gi|2257478|dbj|BAA21376.1| orf144d [Deinococcus radiodurans]
          Length = 210

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 34/218 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           + + I +A   +      T   +A++ G+   + ++                 + K+   
Sbjct: 8   TRRSILQA--TLRLGAGATAGQVAQEVGITKQAISQ-------------QVNILRKL--- 49

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                               +            +   G    G    G        PE  
Sbjct: 50  ------------GYLQPAETRYGPLQVTDRARAALGEGLPIYGQIAAGIPALAEQSPEDF 97

Query: 125 SPH-NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR-LLIKPRTGDIV 181
           +P    +  ++  D   + +  SM  +    GD +++  A +V+ G+  +++ P      
Sbjct: 98  TPSIEALLGLKAGDFLLRVRGESMTGIGVMDGDYVVVRPAPEVHDGEVAVVLVPGDNAAT 157

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K L    G+ I L S N   P  +     ++   R++
Sbjct: 158 LKRLY-HFGQDILLTSENPAMPRLSFPAEQVQVQGRMV 194


>gi|307250364|ref|ZP_07532312.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857574|gb|EFM89682.1| LexA repressor [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 173

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 7/126 (5%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
             +   G    G    G     +   E   P NG       D   K    SM  +    G
Sbjct: 40  TAANDDGLPLIGKVAAGTPIIAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDG 99

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---- 210
           D+L ++       G  ++ +    ++  K L  + G  I L   N       V+      
Sbjct: 100 DLLAVHKTNFARNGQVVVARVD-DEVTVKRLEKK-GDLIYLHPENDELQPIIVDPRIEYI 157

Query: 211 DIEWIA 216
           +IE IA
Sbjct: 158 EIEGIA 163


>gi|302059723|ref|ZP_07251264.1| LexA repressor [Pseudomonas syringae pv. tomato K40]
 gi|302134131|ref|ZP_07260121.1| LexA repressor [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 205

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 4   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 48  --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVAR- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R  + + L+  N  Y    V    
Sbjct: 156 LEGEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 190


>gi|28869978|ref|NP_792597.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213966983|ref|ZP_03395133.1| LexA repressor [Pseudomonas syringae pv. tomato T1]
 gi|301385168|ref|ZP_07233586.1| LexA repressor [Pseudomonas syringae pv. tomato Max13]
 gi|37999579|sp|Q881U0|LEXA2_PSESM RecName: Full=LexA repressor 2
 gi|28853223|gb|AAO56292.1| LexA repressor [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213928305|gb|EEB61850.1| LexA repressor [Pseudomonas syringae pv. tomato T1]
          Length = 202

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 1   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 45  --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 98  IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVAR- 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R  + + L+  N  Y    V    
Sbjct: 153 LEGEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 187


>gi|325108926|ref|YP_004269994.1| SOS-response transcriptional repressor, LexA [Planctomyces
           brasiliensis DSM 5305]
 gi|324969194|gb|ADY59972.1| SOS-response transcriptional repressor, LexA [Planctomyces
           brasiliensis DSM 5305]
          Length = 202

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 4/131 (3%)

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
                + I L             +G    G+    V   E                  + 
Sbjct: 64  ESHMSRAIQLTDHAQMRPTSMKLAGQIAAGSPVLAVEEEERVDFSG--LFDDDNHFCLRV 121

Query: 143 QDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
           +  SM      +GD +I+        GD ++      D   K         I L   N  
Sbjct: 122 KGDSMIEDHIAEGDYVIVERRKSCKEGDIVVALVEGQDATLKRFFR-ENGRIRLEPANST 180

Query: 202 YPVDTVEMSDI 212
                 +  +I
Sbjct: 181 MQPIYTDHCEI 191


>gi|261492383|ref|ZP_05988941.1| putative LexA family repressor/S24 family protease [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261497010|ref|ZP_05993372.1| putative LexA family repressor/S24 family protease [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261307331|gb|EEY08672.1| putative LexA family repressor/S24 family protease [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261311957|gb|EEY13102.1| putative LexA family repressor/S24 family protease [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 227

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 4/189 (2%)

Query: 35  PTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
            +  ++ K        R     E+ + + +   +   +      S     E +  + P+ 
Sbjct: 29  KSYISQLKSGKSSFGERAARRLENEYGMPSFYLDYDEETESAIVSAMSIQETQSHQYPIH 88

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                   G              ++                           SM P   K
Sbjct: 89  LIDFKAKAGETGFINTNYPEIIQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMSPTINK 148

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           GD++ +++ I     + + I     ++  K L    G     +S N  Y    ++   ++
Sbjct: 149 GDVVFIDTTINYYNNEGVYIFVIDDEVYIKRLQKIPGGIYRALSDNKTYEPFDIKRETLD 208

Query: 214 ---WIARIL 219
               + + +
Sbjct: 209 TAIILGKFI 217


>gi|254374758|ref|ZP_04990239.1| prophage repressor protein [Francisella novicida GA99-3548]
 gi|151572477|gb|EDN38131.1| prophage repressor protein [Francisella novicida GA99-3548]
          Length = 217

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                              +L +  +G        + P     + + +P+          
Sbjct: 63  PSDTSIITVANVP------VLSYVQAGEFTESQENIDP----IDYLQIPDSL-------- 104

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN  +    +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVV 209


>gi|323498070|ref|ZP_08103076.1| LexA repressor [Vibrio sinaloensis DSM 21326]
 gi|323316878|gb|EGA69883.1| LexA repressor [Vibrio sinaloensis DSM 21326]
          Length = 206

 Score = 74.0 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 63/214 (29%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KEAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 94  AQEHVETHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVVVARV 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G ++ L + N  +    V++
Sbjct: 154 D-EDVTVKRLERK-GSTVLLHAENEEFEPIKVDL 185


>gi|316984797|gb|EFV63755.1| peptidase S24-like family protein [Neisseria meningitidis H44/76]
          Length = 146

 Score = 74.0 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             + +    +  SM  +    D +++N A   +  D L +     D+  K +       +
Sbjct: 52  PEKLSVITVKGDSMEGVLNHEDSILINHAET-DPRDGLYVLRIGNDLFVKRVQRIP-GKL 109

Query: 194 DLMSLNCCYPVDTVEM----SDIEWIARILWA 221
            + S N  Y    +++     DI  I R+ W 
Sbjct: 110 LVTSENPRYAPFEIDLSNAQDDIAIIGRVEWY 141


>gi|197690562|emb|CAQ19389.1| putative transcriptional regulator [Geobacillus stearothermophilus]
          Length = 152

 Score = 74.0 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              GN        E   P    +    +    K +  SM+      GD+L++     V+ 
Sbjct: 34  VSCGNGVIAYEEIESYEPVPADWIDGGEYFFAKAKGDSMIGARIMDGDLLLIRRQDDVDN 93

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIAR 217
           G+   +     +IV K +      +I L S N  Y    V   D   +  I +
Sbjct: 94  GEIAAVLID-DEIVLKRVYK-TDDTIILQSENPAYKPIVVRPEDAKNVRIIGK 144


>gi|184158540|ref|YP_001846879.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213156198|ref|YP_002318618.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Acinetobacter baumannii AB0057]
 gi|301346671|ref|ZP_07227412.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein
           [Acinetobacter baumannii AB056]
 gi|301596889|ref|ZP_07241897.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein
           [Acinetobacter baumannii AB059]
 gi|332852712|ref|ZP_08434346.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332871084|ref|ZP_08439697.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
 gi|183210134|gb|ACC57532.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213055358|gb|ACJ40260.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Acinetobacter baumannii AB0057]
 gi|323516960|gb|ADX91341.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|323518461|gb|ADX92842.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332729065|gb|EGJ60413.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332731844|gb|EGJ63124.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
          Length = 254

 Score = 74.0 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 68/246 (27%), Gaps = 32/246 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +D +  ++   P+ L +K   +  ++  +      +   R  + E I K    T  
Sbjct: 4   LKSNLDYLLTKNETNPTDLEQKHPEIKQSTVFRILNGITKD-PRRSTLEPIAKWAGVTVN 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------------FFDSGVFPTGNK 114
            +           +       E  L+Y                     F+       G+ 
Sbjct: 63  DLFDKDLSVLERNQNEHNPGPENNLIYDTEIHLYEDGDPVPDGYVAIDFYSEIKVSAGSG 122

Query: 115 WNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
           +  +            +                    SM+P    G  + ++++ +    
Sbjct: 123 YLNIEHQSPHKFLFPINEIRRYDVKPDCAKVLVVDGESMIPDLYPGQRISIDTSAKRIFD 182

Query: 169 DRLLIKPRTGDIVAKVLIS---RRGRSIDLMSLNCC--------YPVDTVEMSDIEWIAR 217
             +    +  ++  K+L     +       +S N          Y    +E  +++ I +
Sbjct: 183 GEIYAFLKGDELKIKMLFEWNEQGKGGFKAVSRNTDKVKYPDEYYSPARIEAENVQIIGQ 242

Query: 218 ILWASQ 223
             W S+
Sbjct: 243 YWWKSE 248


>gi|311281411|ref|YP_003943642.1| transcriptional repressor, LexA family [Enterobacter cloacae SCF1]
 gi|308750606|gb|ADO50358.1| transcriptional repressor, LexA family [Enterobacter cloacae SCF1]
          Length = 202

 Score = 74.0 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGAIEIVSGASRGIRLLTEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPAMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GSVVELLPENSEFSPIVVDLRQ 183


>gi|298489951|ref|YP_003720128.1| LexA family transcriptional repressor ['Nostoc azollae' 0708]
 gi|298231869|gb|ADI63005.1| transcriptional repressor, LexA family ['Nostoc azollae' 0708]
          Length = 200

 Score = 74.0 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 43/173 (24%), Gaps = 8/173 (4%)

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            PS   + + +   +    Q       +    +  E +   +        G    G    
Sbjct: 25  SPSIRQMMQAMNLKSPAPIQSRLEHLRNKGYIDWNEGKARTIRVLRQTKQGVPILGTIAA 84

Query: 112 GNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV---N 166
           G         +     +    ++       +    SM   L   GD++ L    +     
Sbjct: 85  GGLIE--PFTDAVEHLDFSNLSLPAHSYALRVAGDSMIEDLIADGDVVFLRPVPEPNHLK 142

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G  +  +        K    +    + L   N  Y    V    +E    ++
Sbjct: 143 NGTIVAARVEGHGTTLKRFYRQEN-MVTLKPANPKYQPIEVPAMHVEVQGSLV 194


>gi|260886437|ref|ZP_05897700.1| repressor LexA [Selenomonas sputigena ATCC 35185]
 gi|260863819|gb|EEX78319.1| repressor LexA [Selenomonas sputigena ATCC 35185]
          Length = 152

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 10/112 (8%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
               N  +    P+     +      ++    + +  SM+      GD + +      + 
Sbjct: 44  LAEENIEDVFSFPQGLIGTH------SKVFVLRVKGRSMINAGIHDGDFVFVKQQETADN 97

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D ++     G    K     +   I L   N           ++  + +++
Sbjct: 98  NDIVVALVDDGSATVKRFFKEKD-CIRLQPENDEMEPFY--EKNVRILGKVI 146


>gi|162452745|ref|YP_001615112.1| LexA repressor [Sorangium cellulosum 'So ce 56']
 gi|189046550|sp|A9F881|LEXA_SORC5 RecName: Full=LexA repressor
 gi|161163327|emb|CAN94632.1| LexA repressor [Sorangium cellulosum 'So ce 56']
          Length = 230

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 53/223 (23%), Gaps = 18/223 (8%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPT-----SFNKSKRFGIEGRNR 51
           M   +   +++   I +        P+   +    G+  T          +R G   R  
Sbjct: 1   MQGLTERQQQVLHYIRQSISERGYPPTLREIGAHMGIRSTNGVNDHLRALERKGYLTRED 60

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             S     + L          L     +G        +   L              +   
Sbjct: 61  MKSRALRPRDLDGAGAGGGADLRGALVNGGNDAPANDQEDDLVEIAVVGRIAAGLPILAE 120

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDR 170
            +  +TV +               +    +    SM       GD + +   +    GD 
Sbjct: 121 EHVLDTVRIERTLVRGGR------EVFGLRVTGDSMIEAGIFSGDYIFVRRQLTAQRGDI 174

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           ++      +   K     +   +     N       V  SD +
Sbjct: 175 VVALI-GDEATVKYFFPEKD-YVRFQPANAAMAPILVRASDFK 215


>gi|254291837|ref|ZP_04962621.1| LexA repressor [Vibrio cholerae AM-19226]
 gi|150422273|gb|EDN14236.1| LexA repressor [Vibrio cholerae AM-19226]
          Length = 209

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +A++ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIKSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +             +       +      +           G    G    G    
Sbjct: 46  HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAEIGLPLIGRVAAGEPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 97  AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G  + L + N  +    V+++
Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189


>gi|75908417|ref|YP_322713.1| SOS-response transcriptional repressor LexA [Anabaena variabilis
           ATCC 29413]
 gi|75702142|gb|ABA21818.1| SOS-response transcriptional repressor, LexA [Anabaena variabilis
           ATCC 29413]
          Length = 201

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 46/190 (24%), Gaps = 8/190 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                +     I      PS   + + +   +    Q            E  E +   + 
Sbjct: 8   QQELYEWLAEYIRIHQHSPSIRQMMQAMNLKSPAPIQSRLEHLRTKGYIEWTEGKARTIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYR 152
                  G    G    G         +     +   +A+  Q    +    SM   L  
Sbjct: 68  ILQPIKQGVPVLGAIAAGGLIE--PFTDAVEHIDFSNFALPAQTYALRVTGDSMIEDLIT 125

Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            GD++ L    +      G  +  +        K      G  I L   N  Y    V  
Sbjct: 126 DGDLVFLRPVPEPDQLKNGTIVAARVDGYGNTLKRFYR-SGDRITLKPANPKYNPIEVAA 184

Query: 210 SDIEWIARIL 219
             +E    ++
Sbjct: 185 IQVEVQGSLV 194


>gi|54293947|ref|YP_126362.1| hypothetical protein lpl1004 [Legionella pneumophila str. Lens]
 gi|53753779|emb|CAH15239.1| hypothetical protein lpl1004 [Legionella pneumophila str. Lens]
 gi|307609767|emb|CBW99282.1| hypothetical protein LPW_10611 [Legionella pneumophila 130b]
          Length = 168

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        +       +     +    SM+      GD L+++ +I+ + G  ++
Sbjct: 58  ADDYIE--GYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLVDRSIEPSDGRIVI 115

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  + G  + L+  N  +    +       I  ++
Sbjct: 116 AAVN-GELTVKRLSKK-GGRVQLLPANPKFQPIDITEDSEMVIWGVV 160


>gi|315128231|gb|EFT84267.1| phage repressor protein, putative [Staphylococcus aureus subsp.
           aureus CGS03]
          Length = 243

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 65/242 (26%), Gaps = 33/242 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLA--------RKAGLDPTSFNKSKRFGIEGRNRWPST----- 55
           I E + ++ +  N+T   LA            L     +K +    E R           
Sbjct: 3   IGEGLKKLRKNKNMTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYF 62

Query: 56  ----ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF------- 104
                 ++     T +    +  +        ++                          
Sbjct: 63  NVKINDLYSESNTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNKVISIDGYKESK 122

Query: 105 ---DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILI 158
                    TG         +I          +T    D        SM P+ ++G    
Sbjct: 123 LVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAF 182

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIAR 217
           +     +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +
Sbjct: 183 IKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGK 240

Query: 218 IL 219
           ++
Sbjct: 241 VV 242


>gi|310827729|ref|YP_003960086.1| putative prophage repressor [Eubacterium limosum KIST612]
 gi|308739463|gb|ADO37123.1| putative prophage repressor [Eubacterium limosum KIST612]
          Length = 226

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 15/213 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  +    N T   ++RK  L P S ++  R  +      P   +I ++ A  + + 
Sbjct: 13  GQRLKYLMTNFNETTYSMSRKFNLSPPSISRYTRGEM-----APKITTIREMAAYFDVSP 67

Query: 70  CQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             L+  P S          +               +   VF      +T+ +P       
Sbjct: 68  LWLMGRPGSMYEREVLDDTEPFGAEVTLSVFGSIKYQLPVFSNEKTIHTLTLPS------ 121

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
              A        +  D SM P   K D +++     +  GD   +     D+  + +  R
Sbjct: 122 DQLAKWGPVFAMEITDASMEPTLMKNDFVVVRLNTFLKSGDLTALHVGESDLKIRKVSFR 181

Query: 189 RGRSIDLMSLNCCYPVDTVEM--SDIEWIARIL 219
           + + I L   N  + V+  ++   +++ I  ++
Sbjct: 182 KNQVI-LQPHNPAFEVEIYDLNKDNVQVIGSVV 213


>gi|197284836|ref|YP_002150708.1| phage repressor [Proteus mirabilis HI4320]
 gi|194682323|emb|CAR42114.1| putative phage repressor [Proteus mirabilis HI4320]
          Length = 215

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I     + +LT   LA+   +   S  K +    E     P  E++  +      +   
Sbjct: 4   RIKERRLQLSLTQEALAKMLSVSRVSITKWETRVTE-----PDGENLQALAKVLEVSPEW 58

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           LL    S         ++   +   P  +             +++T+ + +I+       
Sbjct: 59  LLYGGNSSEADALIITRKTVNIKKIPIITLEQAADWK----ARYDTLRLSDIQHWCCATV 114

Query: 132 AIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQVNC---GDRLLIKPRT-GDIVA 182
            +  Q      Q  SM     LP   KG  +I+  + +      G  ++ K     DIV 
Sbjct: 115 PVSEQAYGLIYQGESMTNPYSLPSIPKGSTVIIEPSFKNKIELYGKIIIAKNIITNDIVI 174

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           K  I    +   L+SLN  +       +D + I  ++   Q
Sbjct: 175 KKFIHEPPQ-FYLISLNTAFTPILFT-NDYQIIGYVIQIIQ 213


>gi|206580872|ref|YP_002241016.1| LexA repressor [Klebsiella pneumoniae 342]
 gi|288937661|ref|YP_003441720.1| transcriptional repressor, LexA family [Klebsiella variicola At-22]
 gi|290512400|ref|ZP_06551767.1| LexA repressor [Klebsiella sp. 1_1_55]
 gi|226694235|sp|B5XXY9|LEXA_KLEP3 RecName: Full=LexA repressor
 gi|206569930|gb|ACI11706.1| LexA repressor [Klebsiella pneumoniae 342]
 gi|288892370|gb|ADC60688.1| transcriptional repressor, LexA family [Klebsiella variicola At-22]
 gi|289775395|gb|EFD83396.1| LexA repressor [Klebsiella sp. 1_1_55]
          Length = 202

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGAIEIVSGASRGIRLLTEEEHGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSMFKPNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNVVELLPENSEFTPIVVDLRQ 183


>gi|54292962|ref|YP_122349.1| hypothetical protein plpl0056 [Legionella pneumophila str. Lens]
 gi|53755870|emb|CAH17375.1| hypothetical protein plpl0056 [Legionella pneumophila str. Lens]
          Length = 168

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        +       +     +    SM+      GD L+++ +I+ + G  ++
Sbjct: 58  ADDYIE--GYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLVDRSIEPSDGRIVI 115

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  + G  + L+  N  +    +       I  ++
Sbjct: 116 AAVN-GELTVKRLSKK-GGRVQLLPANPKFQPIDITEDSEMVIWGVV 160


>gi|293606987|ref|ZP_06689331.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814584|gb|EFF73721.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 225

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 10/223 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +     +D   + + ++ + LA + G+   +    +  G   R       ++ ++   +
Sbjct: 2   QRDFVAKLDFQMQSNGVSAAALAERLGVSTPAVYGWRNNGRFDREHAM---ALAQVFGTS 58

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                       +    +     +   +  P  G+   + + + PT      + V     
Sbjct: 59  IAYWLSPEIPVGAPTDLSALAGSDAETIDIPFLGARLNYGTMLPPTACAIRHLRVSRAWL 118

Query: 126 PHNGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                  A  T       +   M P +R+GDI  + S ++    D L +  +   +  + 
Sbjct: 119 NGRLPLDANLTTVGFVYIEGAFMEPTFRQGDIAFVQSDVKEVNADGLYLIRQGEQVDLRF 178

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARI--LWA 221
           +    G  + L + +       V + D    ++ +AR+   WA
Sbjct: 179 VQRLPGGGLRLSTESTKVAPIDVPVQDLDDFVQIVARVPFTWA 221


>gi|157413820|ref|YP_001484686.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9215]
 gi|157388395|gb|ABV51100.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9215]
          Length = 205

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 54/189 (28%), Gaps = 8/189 (4%)

Query: 38  FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
                +  ++     PS   + + +   +    Q       +      +E +   +    
Sbjct: 16  LYGWIKEYMKDFQHSPSIRQMMQAMGLKSPAPIQSRLKHLQEKGYISWQEGKARTMQIVD 75

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
               G    G    G    T    +     + +   +           SM+      GD+
Sbjct: 76  EIIEGVPIMGSVAAGGLIETYSDVQENLDISDVLK-RKNVFALTVNGDSMIDACIADGDM 134

Query: 157 LILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           +++     +  +  G  +           K  + R G  I L + N  Y    + + ++ 
Sbjct: 135 VLMEPIKDSYSLKNGTIVSALVPGLGTTLKYFVKR-GGKIFLEAANPAYEPIELNLDEVV 193

Query: 214 WIARI--LW 220
           +  ++  +W
Sbjct: 194 FQGKLLAVW 202


>gi|161869964|ref|YP_001599133.1| UmuD/LexA family transcriptional regulator [Neisseria meningitidis
           053442]
 gi|161595517|gb|ABX73177.1| transcriptional regulator, UmuD/LexA family [Neisseria meningitidis
           053442]
          Length = 146

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             + +    +  SM  +   GD +++N A   +  D L +     D+  K +       +
Sbjct: 52  PEKLSVITVKGDSMEGVLNHGDSILINHAKT-DPRDGLYVLRIGNDLFVKRVQRIP-GKL 109

Query: 194 DLMSLNCCYPVDTVE----MSDIEWIARILWA 221
            + S N  Y    ++      DI  I R+ W 
Sbjct: 110 LVTSENPRYAPFEIDFSNAQDDIAIIGRVEWY 141


>gi|319761849|ref|YP_004125786.1| lexa repressor [Alicycliphilus denitrificans BC]
 gi|317116410|gb|ADU98898.1| LexA repressor [Alicycliphilus denitrificans BC]
          Length = 193

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             PE+ +  + +     + + HK +  SM      +GD++++        GD ++     
Sbjct: 86  EEPEVLTIDDYLIDDPNRTSLHKVRGDSMKDAGILEGDLVVVEHHTPTKPGDIVVAWAD- 144

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++  K L+        L   N  Y       + +E +  ++
Sbjct: 145 NELTVKTLLLDPQGRYYLQPANSAYQPI-FPATSLEVMGVVI 185


>gi|313905803|ref|ZP_07839162.1| LexA repressor [Eubacterium cellulosolvens 6]
 gi|313469409|gb|EFR64752.1| LexA repressor [Eubacterium cellulosolvens 6]
          Length = 200

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 55/216 (25%), Gaps = 36/216 (16%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I   ++   + +  +PS   +A   G+   +  K                          
Sbjct: 12  IKAFVEEYYKNYRHSPSTTEIADAVGIARGTAYKY-----------------------LV 48

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                 +        +TEK EK                             V +P     
Sbjct: 49  AMNDNGMIRYDGQQISTEKTEKVQTEFTSVALLGAVSCGVPTLEEEYIEEYVSLPASMFG 108

Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                  +      + +  SM       GD++++    +   GD ++      +   K  
Sbjct: 109 -------KGTFFLLRAKGESMIEAGISPGDLVLVRRQSEAKDGDIVVAL-VANENTLKRY 160

Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIA-RIL 219
              +  + I L   N       V    I+ +A +++
Sbjct: 161 FVDKENQKIRLHPENKTMKDIIVSDCKIQGVAVKVI 196


>gi|258405026|ref|YP_003197768.1| Peptidase S24, S26A and S26B, conserved region [Desulfohalobium
           retbaense DSM 5692]
 gi|257797253|gb|ACV68190.1| Peptidase S24, S26A and S26B, conserved region [Desulfohalobium
           retbaense DSM 5692]
          Length = 148

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 8/130 (6%)

Query: 94  YFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
                       +   P G      + +  P     H  + + +      +    SM   
Sbjct: 16  PLVQKEQQTPLYTARVPAGFPSPADDHLDRP--LDLHEYLISNEAATFMVRVSGDSMSGA 73

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
               GDIL+++ ++    G  ++     G++  K L  R G    L + +  YP  TV  
Sbjct: 74  GILDGDILVVDRSLSPRTGHIVVAVLD-GELTVKRLTRR-GEQWRLEAAHDGYPPLTVRP 131

Query: 210 SDIEWIARIL 219
                +  ++
Sbjct: 132 EQEFLVWGVV 141


>gi|187940114|gb|ACD39246.1| hypothetical protein PACL_0458 [Pseudomonas aeruginosa]
          Length = 253

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 61/248 (24%), Gaps = 56/248 (22%)

Query: 11  EAIDRMAERHNLTP----SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   A           + LA+     P + +K            P  +++  I  A  
Sbjct: 14  ARLKEAASDAGFQEWGLGARLAKITKRTPKAVSKWMNLES-----MPERDAMLSIADAFG 68

Query: 67  ETICQLLDLPFSDGRTTEKKEKE------------------------------IPLLYFP 96
             +  L               +                                PL+ + 
Sbjct: 69  VRVDWLEHGQGEKNSRYMTSNRTEDAVRNLVAERAGDYGNVQPTAQPSRKKKGYPLISWV 128

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
            +G+         P G+    +                      +    SMLP + +G  
Sbjct: 129 AAGAWAESHDNFQP-GDAEEWIESEAKAGE---------NGYWLEVHGDSMLPSFPEGTR 178

Query: 157 LILNSAI-QVNCGDRLLIKPR----TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           +++      +  G   +          +   K  +   GR   LM LN  Y    V   +
Sbjct: 179 ILVQPEGFDLVSGKFYVALLYEPGKQRETTFKQYVRDAGREY-LMPLNKDYKPLQVT-EN 236

Query: 212 IEWIARIL 219
           +  I R++
Sbjct: 237 VRVIGRVI 244


>gi|283852524|ref|ZP_06369792.1| putative phage repressor [Desulfovibrio sp. FW1012B]
 gi|283572132|gb|EFC20124.1| putative phage repressor [Desulfovibrio sp. FW1012B]
          Length = 278

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 67/252 (26%), Gaps = 43/252 (17%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---------WPSTESIFK 60
           W+A+  +A   N   + +A   G+     +K        +             S E +  
Sbjct: 25  WKALVDLAAMENANQAEMAAFVGVSQGYVSKILAGKQAPKPALRRRFAAFFKLSYEDMVA 84

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------- 109
           +     E+   + +   +                 P + +  F                 
Sbjct: 85  LGRERLESQAYVSEGAGAKRYHVRDPLYGGDAAGRPQASATDFAALKSLLRDLRAREVHQ 144

Query: 110 ------------------PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
                              T      +     R+            T  +    SM P  
Sbjct: 145 ASYTEVPLREATGSMGGGSTETGDRALTYLSFRTDWIRSKGNPEYMTVIRAFGDSMEPTI 204

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EM 209
             G +++++   +    +++      G +  K L+ R    + + S N   P   +  + 
Sbjct: 205 PDGSVVLIDEGRRQFVKNKVYYLRYNGQMYIKRLVER-DGRLAIASDND--PNLLLVSDA 261

Query: 210 SDIEWIARILWA 221
            D E I R +W+
Sbjct: 262 DDFEIIGRCIWS 273


>gi|331014287|gb|EGH94343.1| LexA repressor [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 205

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M++ S ++  I   I     +   +PS   ++   G    S  +                
Sbjct: 4   MSTLSPRRSAILTFIRDRIAQQGQSPSLAEISEAFGFASRSVAR---------------- 47

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               I+A T   + +++       R    + +   L             +   P G   +
Sbjct: 48  --KHIVALTEAGLIEVVAHQARGIRLLNSEPRPELLEIPVLGRV-----AAGAPIGPDLD 100

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                      +     +  D   + Q  SM       GD++ ++   Q + G  ++ + 
Sbjct: 101 IH----TTLHLDRSTFTRVPDYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVPRL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L  R  + + L+  N  Y    V    
Sbjct: 157 D-GEVTIKRLQHRGDQ-LHLLPRNPAYQPIIVTPDQ 190


>gi|296102600|ref|YP_003612746.1| DNA polymerase V UmuD [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057059|gb|ADF61797.1| DNA polymerase V UmuD [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 123

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     +    SM+      GD+L+++ ++    GD ++  
Sbjct: 11  DYVE--DSLDLNKLVIKHPSATYFVRVSGDSMIGAGISHGDLLVVDRSLTAVHGDIVIAA 68

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G+   K L +     + L+  N  Y         ++E    +
Sbjct: 69  -VAGEFTVKELQTHP--RLQLIPHNPDYAPVFFAAEDELEIFGVV 110


>gi|289208993|ref|YP_003461059.1| transcriptional repressor, LexA family [Thioalkalivibrio sp.
           K90mix]
 gi|288944624|gb|ADC72323.1| transcriptional repressor, LexA family [Thioalkalivibrio sp.
           K90mix]
          Length = 207

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155
            +        G    G+        E     +        D   +    SM       GD
Sbjct: 72  AARPAELPLVGRVAAGSPILATEHIERHYRIDDGLFRARPDYLLRVHGESMRDAGILDGD 131

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---- 211
           +L +    + + G  ++ +    ++  K    + G  + L+  N  +    +++      
Sbjct: 132 LLAVRQTPEAHPGQIVVARI-EDEVTVKRY-EQDGARVRLLPENPDFAPIEIDLERQALA 189

Query: 212 IEWIA 216
           IE I 
Sbjct: 190 IEGIG 194


>gi|186684595|ref|YP_001867791.1| SOS-response transcriptional repressor, LexA [Nostoc punctiforme
           PCC 73102]
 gi|186467047|gb|ACC82848.1| SOS-response transcriptional repressor, LexA [Nostoc punctiforme
           PCC 73102]
          Length = 201

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 44/187 (23%), Gaps = 8/187 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                +     I      PS   + + +   +    Q            E  E +   + 
Sbjct: 8   QQELYEWLAEYIRTHQHSPSIRQMMQAMNLKSPAPIQSRLEHLRTKGYIEWTEGQARTIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYR 152
                  G    G    G         +     +   + +  Q    +    SM   L  
Sbjct: 68  ILRPVKQGVPILGTIAAGGLIE--PFTDAVDHLDFSNFDLPPQTYALRVAGDSMIEDLIT 125

Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            GD++ L    +      G  +  +        K    + G  + L   N  Y    V  
Sbjct: 126 DGDVVFLRPVAEPNHLKNGTIVAARVDGFGTTLKRFYRQ-GDRVTLKPANPKYNPIEVSA 184

Query: 210 SDIEWIA 216
             ++   
Sbjct: 185 MQVQVQG 191


>gi|253574140|ref|ZP_04851482.1| SOS-response transcriptional repressor [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846617|gb|EES74623.1| SOS-response transcriptional repressor [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 290

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 77/284 (27%), Gaps = 71/284 (25%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     K + E I +      +T   L  + G+  ++ +K ++  +       ++E++F 
Sbjct: 1   MADLK-KALGERIKKCRLEKGMTLRELGSQVGMTSSALSKVEKGSV-----SITSENLFA 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----------- 109
           I  A   ++  LL    +  +       E+     P      +     F           
Sbjct: 55  ISEAFGVSVDWLLTGKEAQFKDEGYDTNEVRKEATPIFFDEEWEVVSQFRNLSDEEKTFV 114

Query: 110 ----------------------------PTGNKWNT-------------------VGVPE 122
                                         G   +T                   + +  
Sbjct: 115 KQYLRFTQAQKKDQQSSEDEKEDTIREEAAGYAIDTNSADEYTGSAPIWGEAAAGIPIES 174

Query: 123 IRSPHNGIYAIQTQ---DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           IR        +  +       K +  SM       G  +I+ S   V+  D   +     
Sbjct: 175 IRMYEGKRLRVPAKYNKCFAVKVKGDSMKDSGILNGGYVIVRSQNMVDDDDI-ALMMIEN 233

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221
               K    R    + L+S N  +       S +++ + ++++ 
Sbjct: 234 QATIKRFHLRGND-VVLISDNDDFEPMVFHRSKEMQVVGKVVYY 276


>gi|84624899|ref|YP_452271.1| LexA repressor [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368839|dbj|BAE69997.1| LexA repressor [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 201

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 66/215 (30%), Gaps = 35/215 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + ++  +   +     +  ++PS   +A+  G          R   +   +  +  
Sbjct: 1   MPPLTPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++L           +               +  L      + G       P G    
Sbjct: 53  GLIELL----------PNQKRGIRVPGCAGRDALLNLPVLGRVAAG------VPIGA--- 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +G+         +++++      + Q  SM+      GD++ ++ + +   G  ++ + 
Sbjct: 94  DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSKEARDGQIVVARV 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G+I  K L       I L+  N  +    V   
Sbjct: 153 D-GEITIKRLER-GTERIRLLPRNRAHAPIVVAAD 185


>gi|300777210|ref|ZP_07087068.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
 gi|300502720|gb|EFK33860.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
          Length = 260

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 17/219 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I  +  +  L+   LA++  L    ++K +    +GR+  P  E + +I    N +I 
Sbjct: 6   ENIRYLRAQKKLSQQELAKEIFLSRVRYSKYE----DGRSEAP-YEVLIRISKYFNISID 60

Query: 71  -----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEI 123
                 +   P  D       +  +P++      +           G    ++     E 
Sbjct: 61  LLLTVDIRKYPLEDMINLPANKVLLPIVVDTEGNNFIEIVPQKASMGYLKGFSDPEYIEN 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDI 180
                  +    +         SM P +    ILI   +     +       I      I
Sbjct: 121 LQKIYFPFLKNGKYRGFLADGDSM-PPFADQSILIGEYVEKLEDLKANKE-YIFVTQEGI 178

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K  + R  + I +++ N  Y    + + +I  + R +
Sbjct: 179 TYKTFLKRNKKYITVLADNSFYEPYNIALDEIAQVWRYV 217


>gi|114331472|ref|YP_747694.1| putative phage repressor [Nitrosomonas eutropha C91]
 gi|114308486|gb|ABI59729.1| putative phage repressor [Nitrosomonas eutropha C91]
          Length = 344

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 69/251 (27%), Gaps = 37/251 (14%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-------------WP 53
            ++ E +  +      +P  LA+   +     ++      +   +             W 
Sbjct: 95  DRLLEVMRELRIE---SPRELAKFCNVSEGLVSQWFSGQTKLGPKPLLALSKTKFSIEWL 151

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            T  + K    ++  +    +     G      +    + +F  +          +  G 
Sbjct: 152 LTGKLPKYSPRSDIEMHGFNESNVEPGLDITTPQPSHRVSFFDSTPQPDEVVIPQYDAGG 211

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ--------------DTSMLPLYRKGDILIL 159
                 + +        + +  +  R   +                SM P++  GD L++
Sbjct: 212 SMGNGLILDGMVGVIKSWHVDHEWLRLNVRRHTGVNNLCIVTGFGPSMQPMFNPGDPLLM 271

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRR---GRSI-DLMSLNCCYPVD-TVEMSDIEW 214
           +  +     D +           K +       G  I    S N  Y     VE  D E 
Sbjct: 272 DRGVTEVDSDAVYFFRVGNHGYIKTIQRIPTTDGGVIYRAKSKNSDYDPFDIVEGMDFEV 331

Query: 215 IARI--LWASQ 223
             +I  +W S+
Sbjct: 332 FGKILTVWKSE 342


>gi|312866700|ref|ZP_07726914.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
           F0405]
 gi|311097781|gb|EFQ56011.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
           F0405]
          Length = 251

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 24/228 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  + +        L+R  G+  ++     +            E++ KI A     
Sbjct: 19  ISEKIRELLKEQGKKQIELSRITGIPASTLTGYVKGTSLPVP-----ENLEKIAAFFQVA 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS----GGFFDSGVFPTGNKWNTVGVPEIR 124
           + ++     +D    + + + +       +       G           K          
Sbjct: 74  VAEIDPRLRNDFVVIDSEIERLYKQLDEGNQENLLSYGKSLLTHQKEKQKIEKQYHSYSV 133

Query: 125 SPHNGIYAIQTQD------------TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
                 Y  Q Q                     S+ P Y KG ++++        G  + 
Sbjct: 134 YDSFAAYQNQKQADIVWFDQKIPYDLAFWIHTDSLEPKYEKGAVVLIKQTYYDQAG-AIY 192

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                G  + K +       I L+SLN  Y    + + +    I +++
Sbjct: 193 AIDFDGQTLIKRVFREANG-IRLVSLNKKYSDQIIPLDEEPGVIGKVI 239


>gi|240949485|ref|ZP_04753825.1| LexA repressor [Actinobacillus minor NM305]
 gi|240296058|gb|EER46719.1| LexA repressor [Actinobacillus minor NM305]
          Length = 210

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 62/218 (28%), Gaps = 34/218 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I++ +        + P+   +AR+ G                     + E +  +  
Sbjct: 10  QQEIFDFVKNHITTTGMPPTRVEIAREIGFKSP---------------NAAEEHLKALAR 54

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                              T +  + +       +   G    G    G     +   E 
Sbjct: 55  K----------GYIEMLSGTSRGIRILVNDEMEAANDEGLPLIGKVAAGTPIEAIEHIED 104

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P NG       D   +    SM  +    GD+L ++       G  ++ +    ++  
Sbjct: 105 HYPVNGSMFSPAADYLLRVNGNSMEKIGILDGDLLAVHKTNYAKNGQVVVARVD-DEVTV 163

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K L  + G  I L   N       V+      +IE IA
Sbjct: 164 KRLEKK-GDLIYLHPENDELEAIVVDPRIEYIEIEGIA 200


>gi|294676566|ref|YP_003577181.1| S24 family peptidase [Rhodobacter capsulatus SB 1003]
 gi|294475386|gb|ADE84774.1| peptidase, S24 family [Rhodobacter capsulatus SB 1003]
          Length = 203

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 61/202 (30%), Gaps = 20/202 (9%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK--EI 90
           ++P +    +R         P  + + +        +  L+       +++    +    
Sbjct: 1   MNPETLGGYERGDT-----SPDMQFLARYKQDFAVNLDWLITGDGEMFQSSAGSSQGLPA 55

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--------YAIQTQDTRHKT 142
           P++ F                      V   E                 A     +    
Sbjct: 56  PIMDFSQPDFVRLPVYNDVHASAGSGMVPASEQADGVVAFTRRFLANQGARPDHCSVIWA 115

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC- 201
           + TSM P    G +L+++ + +      + +   +  ++ K    R    ++L+S N   
Sbjct: 116 RGTSMKPTIPDGALLVVDHSQREVEHGCIYVFNVSDRLLVKRARWRLDGRLELVSDNADE 175

Query: 202 -YPVDTVEM---SDIEWIARIL 219
            YPV+T        +  + R++
Sbjct: 176 GYPVETFGAESVDQLRVVGRVV 197


>gi|167856622|ref|ZP_02479319.1| putative regulatory protein [Haemophilus parasuis 29755]
 gi|167852251|gb|EDS23568.1| putative regulatory protein [Haemophilus parasuis 29755]
          Length = 227

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 51/186 (27%), Gaps = 7/186 (3%)

Query: 35  PTSFNKSKRFGI---EGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
            +  ++ K       E   R    E          +   +   +     + T   +  I 
Sbjct: 29  KSYISQLKSGKSSFGERAARRLENEYGMPSFYLDYDEETESAIVSAISIQETHSHQYPIH 88

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
           L+ F        F +  +P      ++                           SM P  
Sbjct: 89  LINFKAKAGETGFINTNYPE--IIQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMAPTI 146

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS- 210
            KGD++ +++ I     + + I     ++  K L    G     +S N  Y    ++   
Sbjct: 147 NKGDVVFIDTTINYYDNEGVYIFAIDDEVYIKRLQKIPGGVYRALSDNKTYEPFDIKREI 206

Query: 211 -DIEWI 215
            D   I
Sbjct: 207 LDTAII 212


>gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987]
 gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987]
          Length = 340

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 10/162 (6%)

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++      +I  L +       T  KK K+   +               F   +    + 
Sbjct: 175 EVADELVPSIEDLRNEKLKKWETQYKKNKDYKNITCINKYGKVAAGIPSFACEDVEKLLY 234

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +P         ++             SM  LY  G+++I+        GD ++     G+
Sbjct: 235 LP------KKYFSPVYDYFALTINGDSMNKLYEDGEVIIVRKQNYARNGDIIIACIL-GE 287

Query: 180 IVAKVLIS-RRGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218
              K     +     +L+    N  +   +    +I  +  +
Sbjct: 288 ATCKEYYFNKDDDKNELIPHSTNPKHKPKSYSNDEIIILGIV 329



 Score = 37.8 bits (86), Expect = 0.97,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            + +  + + LT   LA++  +  ++ +  ++  +E     PS   +  +    N +
Sbjct: 8  NNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVE-----PSIFFLINLANEMNCS 60


>gi|219854874|ref|YP_002471996.1| hypothetical protein CKR_1531 [Clostridium kluyveri NBRC 12016]
 gi|219568598|dbj|BAH06582.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 257

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 24/215 (11%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + E +NLT   +A    L   + +K +   ++     P+ E++  +    N +I  
Sbjct: 56  RLRELREENNLTQGAIASILNLTKANISKYELGRLQ-----PNIETLKLLSDHFNVSI-- 108

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
              +  ++ +  E        ++         F +        +     PE  S +   +
Sbjct: 109 DYLIGVTNIKKVESNYLSRIPIFQITKNHPSLFIAENIS---GYEYFDKPEELSKNYFFF 165

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            I+                  K D++ +     +     +LI+ +   I+ + ++     
Sbjct: 166 KIEDNSM--------SNARIFKDDLVCIYKQDHIEDNKLMLIQVKNMGIILRRVLKCGDS 217

Query: 192 SIDLMSLNCCYPVDTVEMSDIE-----WIARILWA 221
            I L   N  Y    +   D+E      I + ++ 
Sbjct: 218 LIIL-PENHKYRPIALSKKDLEEDSFKVIGKAVYV 251


>gi|123968993|ref|YP_001009851.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. AS9601]
 gi|123199103|gb|ABM70744.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. AS9601]
          Length = 205

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 41/223 (18%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +++E I    +    +PS   + +  GL   +                  +S  K L 
Sbjct: 13  QDELYEWIKEYMKNFQHSPSIRQMMQAMGLKSPA----------------PIQSRLKHLQ 56

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  Q               E +   +        G    G    G    T    + 
Sbjct: 57  EKGYISWQ---------------EGKARTMQIVDEIIEGVPIMGSVAAGGLIETYSDVQE 101

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNS---AIQVNCGDRLLIKPRTGD 179
               + +   +           SM+      GD++++     +  +  G  +        
Sbjct: 102 NLDISDVLK-KKNVFALTVNGDSMIDACIADGDMVLMEPIKDSYSLRNGMIVSALVPGLG 160

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220
              K  + R G  I L + N  Y    + + ++ +  ++  +W
Sbjct: 161 TTLKYFVKR-GGKIFLEAANPAYEPIELNLDEVIFQGKLLAVW 202


>gi|119898355|ref|YP_933568.1| LexA repressor [Azoarcus sp. BH72]
 gi|166224552|sp|A1K776|LEXA_AZOSB RecName: Full=LexA repressor
 gi|119670768|emb|CAL94681.1| repressor LexA [Azoarcus sp. BH72]
          Length = 202

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 52/175 (29%), Gaps = 5/175 (2%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  +E   R P+   +       +    +      +       +E     + 
Sbjct: 12  QQEILDFIRQTVESEGRPPTRAEVCSAFGFKSPNAAETHLRALAAKGAILLEEGRARGIR 71

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
              +   G    G    GN        E R   +        D   + +  SM       
Sbjct: 72  LAEAL--GLPLVGRVAAGNPILAAEHVEARIQFDPALFSPRADYLLRVRGMSMRDAGILD 129

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           GD++ ++ + +   G  ++ +    D+  K L  R G  ++L+  N  +    V+
Sbjct: 130 GDLIAVHRSHEARNGQVVVARID-DDVTVKTL-RRNGPIVELLPANPDFDPIVVD 182


>gi|87122369|ref|ZP_01078250.1| regulator for SOS(lexA) regulon [Marinomonas sp. MED121]
 gi|86162344|gb|EAQ63628.1| regulator for SOS(lexA) regulon [Marinomonas sp. MED121]
          Length = 206

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 52/215 (24%), Gaps = 32/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +     + + I          P  + +A K G    +                + E
Sbjct: 1   MIKLTKRQSDVMDTIRDFIAETGFPPTRAEIANKLGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K L                        +    L         G    G    G    
Sbjct: 45  EHLKALCKKGAIEILPGASRGLRIIDEASNDANTEL---------GLPIIGKVAAGYPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                               D        SM  +   +GD+L ++    V  G  ++ + 
Sbjct: 96  AQENVASHVQVPASMFSPQADYLLSVNGMSMKDVGIMEGDLLAVHKTSTVRNGQIVVARI 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              ++  K    + G +I L++ N  +    V++ 
Sbjct: 156 -GDEVTVKRFEKK-GNTIRLIAENEEFNDILVDLE 188


>gi|261210193|ref|ZP_05924490.1| SOS-response repressor and protease LexA [Vibrio sp. RC341]
 gi|260840733|gb|EEX67282.1| SOS-response repressor and protease LexA [Vibrio sp. RC341]
          Length = 209

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 31/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +A++ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIRSKIDETGMPPTRAEIAKELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +             +       +      +           G    G    G    
Sbjct: 46  HLKALARK---------QVIEMVPGASRGIRILVDNAANEEEAETGLPLIGRVAAGEPIL 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 97  AQEHVEAHYQVDPSMFRPQADFLLRVHGESMKNIGILDGDLLAVHKTQDVRNGQVVVAR- 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G  + L + N  +    V+++
Sbjct: 156 VEDDVTVKRLERK-GSKVFLHAENEEFAPIEVDLA 189


>gi|309791896|ref|ZP_07686379.1| SOS-response transcriptional repressor, LexA [Oscillochloris
           trichoides DG6]
 gi|308226068|gb|EFO79813.1| SOS-response transcriptional repressor, LexA [Oscillochloris
           trichoides DG6]
          Length = 215

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 53/218 (24%), Gaps = 24/218 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +KI   I     +H   P+   +     +  TS                   ++  +  
Sbjct: 11  QEKILNYIQEFFAKHGYWPAIRDIQTDLKISSTSVVAY---------------NLKALQD 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                    +    +   T         +       +G                V VP  
Sbjct: 56  KGKINRQGKVSRGITLPNTLGVHNGAHQVPLLGTITAGQPLPDPEEVDIEAAEKVDVPLD 115

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP-RTGDIV 181
            +  + +          + +  SM+      GDI++L      N GD +         + 
Sbjct: 116 LASADKL----KDVYALRVRGLSMIDALIDDGDIVLLRRQDSANNGDMVAALLLDENSVT 171

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K    +    + L   N           ++    R++
Sbjct: 172 LKKFY-QDNGRVRLQPANSTMQPIFTAAENVRIQGRVV 208


>gi|58583065|ref|YP_202081.1| LexA repressor [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188577892|ref|YP_001914821.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|71648695|sp|Q5GX75|LEXA1_XANOR RecName: Full=LexA repressor 1
 gi|58427659|gb|AAW76696.1| LexA repressor [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188522344|gb|ACD60289.1| LexA repressor [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 201

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + ++  +   +     +  ++PS   +A+  G          R   +   +  +  
Sbjct: 1   MPPLTPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++L                 G         +P+L    +G          P G    
Sbjct: 53  GLIELLPN-------QKRGIRVPGGAGRDALLNLPVLGRVAAG---------VPIGA--- 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +G+         +++++      + Q  SM+      GD++ ++ + +   G  ++ + 
Sbjct: 94  DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSKEARDGQIVVARV 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G+I  K L       I L+  N  +    V   
Sbjct: 153 D-GEITIKRLER-GTERIRLLPRNRAHAPIVVAAD 185


>gi|320013822|gb|ADV97393.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 202

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ +     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEEGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L+++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSLFKPGADFLLRVNGMSMRDIGILDGDLLVVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNIVHLLPENSEFQPIVVDLRE 183


>gi|291296371|ref|YP_003507769.1| peptidase S24 and S26 domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290471330|gb|ADD28749.1| peptidase S24 and S26 domain protein [Meiothermus ruber DSM 1279]
          Length = 241

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 27/218 (12%)

Query: 13  IDRMAERHNLT-PSGLARKAGLDPTSFNKSK--RFGIEGRNRWPSTESIFKILAATNETI 69
           I     R  ++ P+  A K G+  T+   +   R    G    P   +++++  A     
Sbjct: 32  IFAAMRRDGISKPNEWADKWGIGRTALRTAMVGRQSAAGTWVRPDIRTLWRLAKAL---- 87

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                    D       E+    L    +        G    G+      + E   P + 
Sbjct: 88  ---------DVPLVYLIERFYDDLEDVEALWPQIPIIGWVGAGSGSEE-DIREKYVPVDM 137

Query: 130 IYAIQTQDTRHKTQDTSMLPL---YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             A++      K +  SM         GD++I++   +   G R++ +   G+ V K+L 
Sbjct: 138 DIALRGSAVAFKVRGNSMCAGPKPICDGDVIIVDCRNKGRVGSRVVARLADGNYVCKLLK 197

Query: 187 SRRGRSIDLMSLNC----CYPVDTVEMSDI-EWIARIL 219
                +  L+S N      YP   +  S + E + +++
Sbjct: 198 HGPNGNY-LVSANPSSDNSYPD-VIPASSVKEIVGKVI 233


>gi|293371159|ref|ZP_06617696.1| peptidase S24-like protein [Bacteroides ovatus SD CMC 3f]
 gi|292633817|gb|EFF52369.1| peptidase S24-like protein [Bacteroides ovatus SD CMC 3f]
          Length = 265

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 66/236 (27%), Gaps = 28/236 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M  FS   ++I + +D       +T     +  G+     ++             S +++
Sbjct: 5   MRDFSILKQRILQYLDF----KGITKYECYKNTGITNGVLSQ---------PNGMSEDNL 51

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K L+  ++     L          + + K   ++                  G      
Sbjct: 52  LKFLSYYSDISTDWLLAGCGSMLRDDNQAKISKIVPIESEFESIPIVDISVAAGYGCENP 111

Query: 119 GVPEIRSPHNGIY---AIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDR 170
              E+    +  Y       +    K +  SM P       LIL         ++     
Sbjct: 112 DFIEVVETISLPYNMLRRNRKYFCVKVRGESMSPTLLDCSYLILRLLDRSEWNEIKDNHV 171

Query: 171 LLIKPRTGDIVAKVL--ISRRGRSIDLMSLN---CCYPVDTVEMSDIEWIARILWA 221
            ++  R+G    K +    R    I   S N     YP   +   +I  I  + W 
Sbjct: 172 YVVSDRSGRAYVKRIKNRFREHGFIVCTSDNVDKANYPNFNLMEDEINTILYVEWY 227


>gi|15988318|pdb|1JHF|A Chain A, Lexa G85d Mutant
 gi|15988319|pdb|1JHF|B Chain B, Lexa G85d Mutant
          Length = 202

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G         
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAADEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|167553752|ref|ZP_02347498.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205321891|gb|EDZ09730.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 139

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
               +   L          +     FP+    + +   +    +  + +  +     K  
Sbjct: 1   MDFFRPTELRDIISLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAT 57

Query: 144 DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM+      GD+L+++S+     GD ++     G+   K L  R   ++ L  +N  Y
Sbjct: 58  GDSMIDAGINDGDLLVVDSSRTAEHGDIVIAAVD-GEFTVKRLQLRP--TVQLNPMNSAY 114

Query: 203 PVDTVEMSD 211
               V   D
Sbjct: 115 SPIIVGSED 123


>gi|148239417|ref|YP_001224804.1| SOS-regulated protein [Synechococcus sp. WH 7803]
 gi|147847956|emb|CAK23507.1| Bacterial UmuD protein homolog (SOS-regulated protein)
           [Synechococcus sp. WH 7803]
          Length = 147

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V V      ++ +    T     +    SM       GD+L+++ ++    G  ++
Sbjct: 38  ADDYVEV--GIDLNDQLIRHPTSTFFLRVSGDSMTGAGIHDGDLLVVDRSLDPRPGRVVV 95

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G    K L   RG+ + L + N  YP   +    D++ 
Sbjct: 96  AVLD-GGFTLKRLARHRGQ-LRLEAANPDYPPLDLHRCGDVQI 136


>gi|763050|gb|AAA85499.1| repressor protein [Streptococcus phage T270]
 gi|1877427|gb|AAC48865.1| repressor [Streptococcus pyogenes phage T12]
          Length = 256

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 9/184 (4%)

Query: 40  KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD---GRTTEKKEKEIPLLYFP 96
                        P  E I   L   N T  QL      +      T+ +++        
Sbjct: 69  NMLNMDNPSTPTTPKVELIPSTLQKINSTSSQLEHKRQLNVLDYAETQLEQQNTGRKNHK 128

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
           P  +   +       G       V   +      Y     D        SM P Y  GD 
Sbjct: 129 PPTTPSNYYDHAASAGTGQYLNDVQVEKIELPVDY---DADFVIPVYGDSMEPKYHSGDY 185

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWI 215
           + +  ++++  GD  +     GD   K L+     +  L SLN  Y    ++   D   I
Sbjct: 186 VFVKLSVELTDGDIGV-FEYYGDAYIKQLLINDEGAF-LHSLNSKYEDILIDRDSDFRII 243

Query: 216 ARIL 219
             ++
Sbjct: 244 GEVV 247


>gi|300821563|ref|ZP_07101710.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
 gi|331667993|ref|ZP_08368849.1| putative repressor protein encoded within prophage [Escherichia
           coli TA271]
 gi|300526066|gb|EFK47135.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
 gi|331064803|gb|EGI36706.1| putative repressor protein encoded within prophage [Escherichia
           coli TA271]
          Length = 212

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 63/211 (29%), Gaps = 21/211 (9%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S + I E I +     NL    L    G    S ++    G    +R+ S  S+ KIL 
Sbjct: 1   MSKQTISERITQRMHALNLKGKDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILK 58

Query: 64  AT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              N  +             +    K +PLL    + S               + +    
Sbjct: 59  VNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSS 105

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRT 177
           I S    +  I         +  SM           G  + ++    V  G+ +L  P+ 
Sbjct: 106 ITSCVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKG 165

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                   +   G  I L+  N  YP   +E
Sbjct: 166 TTTPVIRKLEIEGPDILLVPTNPRYPSIMLE 196


>gi|227327408|ref|ZP_03831432.1| LexA repressor [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
 gi|261820054|ref|YP_003258160.1| LexA repressor [Pectobacterium wasabiae WPP163]
 gi|417244|sp|Q04596|LEXA_PECCC RecName: Full=LexA repressor
 gi|41918|emb|CAA44871.1| lexA [Pectobacterium carotovorum]
 gi|261604067|gb|ACX86553.1| transcriptional repressor, LexA family [Pectobacterium wasabiae
           WPP163]
          Length = 202

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKVLTARQQQVYDLIRDHIAQTGMPPTRAEIAQQLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEETGIPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E R   +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQEHIECRYQVDPAMFKPSADFLLRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQIVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G ++ L++ N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNTVHLLAENEEFAPIVVDLRQ 183


>gi|317052100|ref|YP_004113216.1| peptidase S24/S26A/S26B [Desulfurispirillum indicum S5]
 gi|316947184|gb|ADU66660.1| Peptidase S24/S26A/S26B, conserved region [Desulfurispirillum
           indicum S5]
          Length = 165

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V        +             +    SM+      GDILI++ +++   GD ++
Sbjct: 56  ARDYVD--RSLDLNELCIRHPAATYFVRADGDSMIGAGIFSGDILIVDRSLEAADGDIII 113

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
                G+++ K L  +    + L ++N  YP   + + S++E    ++
Sbjct: 114 AC-LHGELLVKRLRLQ--GQVRLEAMNPDYPPLELHDESELEVFGVVI 158


>gi|167949822|ref|ZP_02536896.1| LexA repressor [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 211

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 35/211 (16%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +I E I          P  + +A   G    S N ++        R  + +   ++L 
Sbjct: 7   QTQILELIRSHLADTGFPPTRAEIAEALGFR--SVNSAEEH-----LRALAKKGAIELLK 59

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            T                           L        G    G    G         E 
Sbjct: 60  GT----------------------SRGIRLLEREMPEAGLPVVGQVAAGQPILAQEHIEE 97

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           R   +        D   + Q  SM  +    GD+L ++ +   + G  ++ +    ++  
Sbjct: 98  RYDFSPDLFQPRADYLLRVQGMSMKDIGIMDGDLLAVHCSQDAHNGQIVVARI-EDEVTV 156

Query: 183 KVLISRRGRS--IDLMSLNCCYPVDTVEMSD 211
           K        S  + L+  N  +    V++ +
Sbjct: 157 KRFFRDERSSHLVVLLPENDDFEPIRVDLRE 187


>gi|299144565|ref|ZP_07037638.1| repressor LexA [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517548|gb|EFI41294.1| repressor LexA [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 203

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 33/219 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKI 61
            K I   I R  E     P+   +  K  +  TS      +R   +G  +   T+     
Sbjct: 9   EKDILFFIKRFLESKGYPPTVREIGIKLNIKSTSTVHTSIERLENKGYLKKDPTK----- 63

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                  +       +      +      G    G         
Sbjct: 64  -------------------PRAIEIIDNNDDVLMIKKKTVDIPIVGSVTAGMPILAYDNI 104

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E   P    +         K +  SM+ +    GD +I+  +     GD++ +     + 
Sbjct: 105 EDTCPLPIEFVRDKNLFILKVKGESMINVGIFDGDYVIIEKSEYAKNGDKV-LALIGDES 163

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K     +     L   N       V+  +++ + +I+
Sbjct: 164 TIKTFYKEKD-FYKLQPENDFMEPIYVK--ELKILGKII 199


>gi|152972907|ref|YP_001338053.1| LexA repressor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238892515|ref|YP_002917249.1| LexA repressor [Klebsiella pneumoniae NTUH-K2044]
 gi|262045553|ref|ZP_06018574.1| LexA repressor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|330004867|ref|ZP_08305049.1| repressor LexA [Klebsiella sp. MS 92-3]
 gi|166224634|sp|A6TGV2|LEXA_KLEP7 RecName: Full=LexA repressor
 gi|150957756|gb|ABR79786.1| LexA repressor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238544831|dbj|BAH61182.1| LexA repressor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259037112|gb|EEW38362.1| LexA repressor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|328536486|gb|EGF62828.1| repressor LexA [Klebsiella sp. MS 92-3]
          Length = 202

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGAIEIVSGASRGIRLLTEEEQGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSMFKPNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-EEVTVKRLKKQ-GNVVELLPENSEFSPIVVDLRQ 183


>gi|50119579|ref|YP_048746.1| LexA repressor [Pectobacterium atrosepticum SCRI1043]
 gi|71658812|sp|Q6D9I5|LEXA_ERWCT RecName: Full=LexA repressor
 gi|49610105|emb|CAG73545.1| LexA repressor [Pectobacterium atrosepticum SCRI1043]
          Length = 202

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I        + P  + +A++ G                  R P+  
Sbjct: 1   MKVLTARQQQVYDLIRDHIAHSGMPPTRAEIAQQLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEETGIPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E R   +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQEHIECRYQVDPAMFKPSADFLLRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQIVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G ++ L++ N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNTVHLLAENEEFAPIVVDLRQ 183


>gi|167751804|ref|ZP_02423931.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216]
 gi|167660045|gb|EDS04175.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216]
          Length = 224

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 15/218 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAATNE 67
            + +  + +   LT   LA++ G+   + +  +       +R  +   + +       + 
Sbjct: 3   GDRLKLLRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDWLDS 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++ +          + +  +PL   P     G          +   T  V  I  P+
Sbjct: 63  GEGEMFNAEPDLTAYMHRTDNTLPLQSVPLYSIEGTAGLVPLFADHA-QTRPVNFIHIPN 121

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI---QVNCGDRLLIKPRTGD---IV 181
                +   D        SM PL + GDI++         +  GD  L+         I 
Sbjct: 122 -----LPKCDGAIYIVGDSMYPLLKSGDIVLYKQLKDIGDIFWGDMYLLSIDIDGEEYIT 176

Query: 182 AKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            K +    R   + L+S N  +    V +  I  +A +
Sbjct: 177 VKYIQKSEREGYVKLVSQNPHHADKEVAVDRIRALALV 214


>gi|325921690|ref|ZP_08183524.1| SOS-response transcriptional repressor, LexA [Xanthomonas gardneri
           ATCC 19865]
 gi|325547830|gb|EGD18850.1| SOS-response transcriptional repressor, LexA [Xanthomonas gardneri
           ATCC 19865]
          Length = 205

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 33/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGRNRWPST 55
           M   S K+  +   +     R  ++PS   +A+  G     +  K  +   E        
Sbjct: 1   MEPLSPKRAAVLIFLQE-QARAGVSPSLAEIAQAFGFASRNAAQKHVQALAE-------- 51

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                ++         +                 +P+L    +G          P G   
Sbjct: 52  ---AGLIELLPNQKRGIRVPGRMRPDPARDAVLALPVLGRVAAG---------VPIGAD- 98

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
             +G+         +++++      + Q  SM+      GD++ ++ +     G  ++ +
Sbjct: 99  --IGLDRQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNDARDGQIVVAR 155

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              G+I  K L       I L+  N  +    V   
Sbjct: 156 VD-GEITIKRLER-GDERIRLLPRNRAHAPIVVAAD 189


>gi|322832500|ref|YP_004212527.1| Peptidase S24/S26A/S26B, conserved region [Rahnella sp. Y9602]
 gi|321167701|gb|ADW73400.1| Peptidase S24/S26A/S26B, conserved region [Rahnella sp. Y9602]
          Length = 222

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 63/220 (28%), Gaps = 11/220 (5%)

Query: 3   SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             ++ +I      ++ +      S  A     +PT  ++        +        I K 
Sbjct: 1   MKTNDEIRRDNARKLRDSAGGN-SSFAGLIEREPTQVSRVIGKNPTKKIGDDLARHIEKC 59

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                                     +      T   ++ V + 
Sbjct: 60  FDLP-----DGWLDKEHQATNITSAPDVTDTELTIKMVPVISWVQAGAWTEIGYSEVDL- 113

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTGDI 180
            +   +       +     +    SM+  YR GD++ ++  +    GD ++     +G+ 
Sbjct: 114 SLSETYPCPVPCGSMTYILRVIGDSMIDEYRPGDMIFVDPEVAPVHGDDVIALLLDSGET 173

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
             K L+   G    L +LN  +P   +++  +   I  ++
Sbjct: 174 TFKRLVEDAGSKY-LKALNKGWPEQYIKIDGNCSIIGTVV 212


>gi|294102131|ref|YP_003553989.1| transcriptional regulator, XRE family [Aminobacterium colombiense
           DSM 12261]
 gi|293617111|gb|ADE57265.1| transcriptional regulator, XRE family [Aminobacterium colombiense
           DSM 12261]
          Length = 226

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 20/226 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S ++    I R+ +    T   LA   G+  T+    ++        +P+ E++ K+ 
Sbjct: 1   MISGEE----IRRLRKAKGWTQQQLADNVGVAKTTIVDWEKDRY-----FPTGENVHKLS 51

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLY---FPPSGSGGFFDSGVFPTGNKWNTVG 119
            +   +I  L+    +  +  +    +   L               +G+           
Sbjct: 52  RSLEVSIAYLMGETDNPIQIGKDNIFKDYDLIPVALISPEQTACCGAGMIDMDTTCEPEK 111

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +  +     G Y          T   SM       G ++ +N    +   D   +    G
Sbjct: 112 ILVLSRREIGEYDPNRPPYAIHTDGVSMEGFGIPSGSVVFINPREHLESFDVC-LICYYG 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-----IEWIARIL 219
            +  K +I +   + ++ S +       +   +      E   +++
Sbjct: 171 RLAIKKVIFKPNGNFEIFSDSED-DNREISKEEFDSGLFEIRGKVI 215


>gi|251791093|ref|YP_003005814.1| LexA repressor [Dickeya zeae Ech1591]
 gi|247539714|gb|ACT08335.1| SOS-response transcriptional repressor, LexA [Dickeya zeae Ech1591]
          Length = 203

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 37/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTTRQQQVYDLIRDHIAQTGMPPTRAEIASQLGF-----------------RSPNAA 43

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         + L      G           +         G    G    G    
Sbjct: 44  E-------------EHLKALARKGVIEIVTGASRGIRLLMEEEDQGLPLIGRVAAGEPLL 90

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 91  AQQHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L++ N  +    V++ +
Sbjct: 151 -EDEVTVKRLKKQ-GNVVQLLAENKDFAPIVVDLRE 184


>gi|21233670|ref|NP_639968.1| UV protection and mutation protein [Proteus vulgaris]
 gi|11245982|gb|AAG33672.1| MucA [IncT plasmid Rts-1]
 gi|21202854|dbj|BAB93570.1| UV protection and mutation protein [Proteus vulgaris]
          Length = 145

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 101 GGFFDSGVFPTGN-KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
            G      FP+    W    +    + H  +          +    SM       GD+L+
Sbjct: 19  FGELVPAGFPSPAAGWEEAEL----NLHTLVVTHPASTYFLRVTGDSMQDARIHSGDVLV 74

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216
           ++ +     G  ++      +   K LI R      LM +N  YP    +    D+E   
Sbjct: 75  VDRSETPEQGSIVVASID-NEFTVKKLILRPRSC--LMPMNPAYPPIYFDPESNDVEIWG 131

Query: 217 RI 218
            +
Sbjct: 132 VV 133


>gi|307708163|ref|ZP_07644630.1| transcriptional regulator [Streptococcus mitis NCTC 12261]
 gi|307615609|gb|EFN94815.1| transcriptional regulator [Streptococcus mitis NCTC 12261]
          Length = 225

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 12/215 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  E   L    LA   G+   ++ K ++     +    +   + K+L      + + 
Sbjct: 7   LKQKREELGLEQQELAELIGVSKQAYFKWEKGLS--KPTKVNIAKLEKVLKIPEGYLSED 64

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-------VPEIRS 125
                    T   +EK I  +    S       S      + +  +          ++  
Sbjct: 65  EISSLYKQLTEPNQEKAITYVRDLLSSQKIVSISEKRSEYHVYEKLSAGIGASVYGDLDY 124

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                      D        SM P Y+ G++ ++        G  +           K +
Sbjct: 125 DVVYYNEELPHDFASWVDRNSMEPTYQNGEVALIIETGFDYDG-AVYAVVWDSQTYIKKV 183

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                  + L+S++  YP       +    + +I+
Sbjct: 184 YREEEG-LRLVSIDKGYPDKFAPFDENPRVVGKIV 217


>gi|320322392|gb|EFW78486.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 201

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 44/178 (24%), Gaps = 10/178 (5%)

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           RW  T    K    +                    +      +Y     + G   + +  
Sbjct: 16  RWLRTGDGPKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSE 75

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                  + +P       GI               SM    + G IL ++  +       
Sbjct: 76  APG--QKIRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGE 131

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
           +      G +  + L       + L S N   YP +     D     I  +  I W S
Sbjct: 132 IYALEHGGILRVRYLYRMPNGGLRLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 189


>gi|296876405|ref|ZP_06900457.1| phage transcriptional repressor [Streptococcus parasanguinis ATCC
           15912]
 gi|296432695|gb|EFH18490.1| phage transcriptional repressor [Streptococcus parasanguinis ATCC
           15912]
          Length = 254

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 26/229 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN-- 66
           I E I  + +        L+R  G+  ++     +            E++ KI A     
Sbjct: 22  ISEKIRELLKEQGKKQIELSRITGIPASTLTGYVKGTSLPVP-----ENLEKIAAFFQVA 76

Query: 67  ---------------ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                          ++  + L     +G           LL               +  
Sbjct: 77  VADIDPRLRNDFVVIDSEIERLYKQLDEGNQENLLSYGKSLLTHQKERQKIEKQYHSYSV 136

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            + +      +          I            S+ P Y KG ++++        G  +
Sbjct: 137 YDSFAAYQHQKQADIVWFDQKIPYDL-AFWIHTDSLEPKYEKGAVVLIKQTYYDQAG-AI 194

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                 G  + K +       I L+SLN  Y    + + +    I +++
Sbjct: 195 YAIDFDGQTLIKRVFREANG-IRLVSLNKKYSDQIIPLDEEPGVIGKVI 242


>gi|258448877|ref|ZP_05696987.1| cI-like repressor [Staphylococcus aureus A6224]
 gi|257857914|gb|EEV80805.1| cI-like repressor [Staphylococcus aureus A6224]
 gi|329730605|gb|EGG66990.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus
           21193]
          Length = 243

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 65/242 (26%), Gaps = 33/242 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLA--------RKAGLDPTSFNKSKRFGIEGRNRWPST----- 55
           I E + ++ +  N+T   LA            L     +K +    E R           
Sbjct: 3   IGEGLKKLRKNKNMTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYF 62

Query: 56  ----ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF------- 104
                 ++     T +    +  +        ++                          
Sbjct: 63  NVKINDLYSESNTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNKVTSIDGYKESK 122

Query: 105 ---DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILI 158
                    TG         +I          +T    D        SM P+ ++G    
Sbjct: 123 LVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAF 182

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIAR 217
           +     +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +
Sbjct: 183 IKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGK 240

Query: 218 IL 219
           ++
Sbjct: 241 VV 242


>gi|254361512|ref|ZP_04977651.1| possible LexA family repressor/S24 family protease [Mannheimia
           haemolytica PHL213]
 gi|153093026|gb|EDN74047.1| possible LexA family repressor/S24 family protease [Mannheimia
           haemolytica PHL213]
          Length = 227

 Score = 73.3 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 4/189 (2%)

Query: 35  PTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
            +  ++ K        R     E+ + + +   +   +      S     E +  + P+ 
Sbjct: 29  KSYISQLKSGKSSFGERAARRLENEYGMPSFYLDYDEETESAIVSAMSIQETQSHQYPIH 88

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                   G              ++                           SM P   K
Sbjct: 89  LIDFKAKAGETGFVNTNYPEIIQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMSPTINK 148

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           GD++ +++ I     + + I     ++  K L    G     +S N  Y    ++   ++
Sbjct: 149 GDVVFIDTTINYYDNEGVYIFVIDDEVYIKRLQKIPGGIYRALSDNKTYEPFDIKRETLD 208

Query: 214 ---WIARIL 219
               + + +
Sbjct: 209 TAIILGKFI 217


>gi|253570494|ref|ZP_04847902.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251839443|gb|EES67526.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 265

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 65/236 (27%), Gaps = 28/236 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M  FS   ++I + +D       +T     +  G+     ++             S +++
Sbjct: 5   MRDFSVLKQRILQYLDF----KGITKYECYKNTGITNGVLSQ---------PNGMSEDNL 51

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K L+  ++     L          + + K   ++                  G      
Sbjct: 52  LKFLSYYSDISTDWLLAGCGSMLRDDNQTKISKIVPIESEFESIPIVDISVAAGYGCENP 111

Query: 119 GVPEIRSPHNGIY---AIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDR 170
              E+       Y       +    K +  SM P       LIL         ++     
Sbjct: 112 DFIEVVETIRLPYNMLRRNRKYFCVKVRGESMSPTLLDCSYLILRLLDRSEWNEIKDNHV 171

Query: 171 LLIKPRTGDIVAKVL--ISRRGRSIDLMSLN---CCYPVDTVEMSDIEWIARILWA 221
            ++  R+G    K +    R    I   S N     YP   +   +I  I  + W 
Sbjct: 172 YVVSDRSGRAYVKRIKNRFREYGFIVCTSDNVDKANYPNFNLMEDEINTILYVEWY 227


>gi|325202165|gb|ADY97619.1| putative transcriptional regulator [Neisseria meningitidis
           M01-240149]
          Length = 151

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             + +    +  SM  +   GD +++N A   +  D L +     D+  K +       +
Sbjct: 57  PEKLSVITVKGDSMEGVLNHGDSILINHAET-DPRDGLYVLRIGNDLFVKRVQRIP-GKL 114

Query: 194 DLMSLNCCYPVDTVEM----SDIEWIARILWA 221
            + S N  Y    +++     DI  I R+ W 
Sbjct: 115 LVTSENPRYAPFEIDLSNAQDDIAIIGRVEWY 146


>gi|166711026|ref|ZP_02242233.1| LexA repressor [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 201

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + ++  +   +     +  ++PS   +A+  G          R   +   +  +  
Sbjct: 1   MPPLTPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++L                 G         +P+L    +G          P G    
Sbjct: 53  GLIELLPN-------QKRGIRVPGGAGRDALLNLPVLGRVAAG---------VPIGA--- 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +G+         +++++      + Q  SM+      GD++ ++ + +   G  ++ + 
Sbjct: 94  DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G+I  K L       I L+  N  +    V   
Sbjct: 153 D-GEITIKRLER-GTERIRLLPRNRAHAPIVVAAD 185


>gi|71910863|ref|YP_282413.1| phage transcriptional repressor [Streptococcus pyogenes phage
           5005.1]
 gi|71853645|gb|AAZ51668.1| phage transcriptional repressor [Streptococcus pyogenes phage
           5005.1]
          Length = 274

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 62/270 (22%), Gaps = 63/270 (23%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-------------------------- 41
           K+ E I    E   L+    A K+GL     +                            
Sbjct: 2   KLGEIIKNFREEKKLSMDRFAEKSGLTKGYISMLEKNEHPKSKKPIIPTEETLLKVAKGM 61

Query: 42  -----------------------KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
                                  K          P+T  +  I +   +       L  S
Sbjct: 62  GVDIDFVLSKLDSDQEIQINISPKNMLNMDNPSTPTTPKVELIPSTLQKINSTSSQLEHS 121

Query: 79  DGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                    +                       +       G       V   +      
Sbjct: 122 RQIIVLDTAETLLEQQKEIKNNEDTIAELFSYNYYDHAASAGTGQYLNDVQVEKIELPVD 181

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           Y     D        SM P Y  GD + +  ++++  GD  +     GD   K L+    
Sbjct: 182 Y---DADFVIPVYGDSMEPKYHSGDYVFVKLSVELTDGDIGV-FEYYGDAYIKQLLINDE 237

Query: 191 RSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            +  L SLN  Y    ++   D   I  ++
Sbjct: 238 GAF-LHSLNSKYEDIPIDRDSDFRIIGEVV 266


>gi|239907530|ref|YP_002954271.1| UmuD protein [Desulfovibrio magneticus RS-1]
 gi|239797396|dbj|BAH76385.1| UmuD protein [Desulfovibrio magneticus RS-1]
          Length = 143

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +   +    +  +          +    SM       GDIL+++ A++   G  ++
Sbjct: 34  AEDYID--KKIDLNEHLVRHPAATFFVRVDGDSMRDAGVASGDILVVDRALEAKDGSIVV 91

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  R    + L+  N  Y    V       +  ++
Sbjct: 92  AALD-GELTVKRLRRR-DGKLLLVPENPDYQAVEVAPEASFMVWGVV 136


>gi|254362102|ref|ZP_04978223.1| LexA family repressor/S24 family protease [Mannheimia haemolytica
           PHL213]
 gi|153093661|gb|EDN74619.1| LexA family repressor/S24 family protease [Mannheimia haemolytica
           PHL213]
          Length = 149

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 7/126 (5%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
                 G    G    G     V   E   P NG     + D   K    SM  +    G
Sbjct: 16  ANDEDEGLPLIGKVAAGTPILAVEHVENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDG 75

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---- 210
           D+L ++       G  ++ +    ++  K L  + G  I L   N       V  +    
Sbjct: 76  DLLAVHKTNTARNGQVVVARVN-DEVTVKRLEKK-GELIYLHPENDELKPIVVNPAQEYI 133

Query: 211 DIEWIA 216
           +IE IA
Sbjct: 134 EIEGIA 139


>gi|163846070|ref|YP_001634114.1| LexA repressor [Chloroflexus aurantiacus J-10-fl]
 gi|222523803|ref|YP_002568273.1| SOS-response transcriptional repressor, LexA [Chloroflexus sp.
           Y-400-fl]
 gi|163667359|gb|ABY33725.1| LexA repressor [Chloroflexus aurantiacus J-10-fl]
 gi|222447682|gb|ACM51948.1| SOS-response transcriptional repressor, LexA [Chloroflexus sp.
           Y-400-fl]
          Length = 216

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 50/218 (22%), Gaps = 22/218 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +I++ I R  +   ++PS   + R   +  TS                  E + KI+ 
Sbjct: 10  QAEIYQYIVRFIKERGISPSIRDIQRDLHISSTSVVSYNLDV---------LEKLGKIVR 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               +                        +   P        S +              +
Sbjct: 61  NDKISR--------GISLPGMVPALLRNDVGRVPLLGTITAGSPLPDPEEIDINRAEQVV 112

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181
                            K +  SM+      GDI++L        G  +         + 
Sbjct: 113 VPADVVPPERLNNVYALKVRGQSMIDALIDDGDIVLLRQQETAENGQMVAAWLIDENAVT 172

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K         + L   N           ++    R++
Sbjct: 173 LKKFY-LEDGRVRLQPANSTMQPIYTSPDNVRIRGRVI 209


>gi|304440240|ref|ZP_07400130.1| repressor LexA [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371289|gb|EFM24905.1| repressor LexA [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 205

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 46/213 (21%), Gaps = 25/213 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I +  E +   PS              +             ST ++   +     
Sbjct: 11  DILLFIKKYIENNGYPPS------------VREICNGCSIK-----STSTVHAAMEKLEL 53

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                            +       L      +      G    G         E   P 
Sbjct: 54  LDY---IRKDPSKPRAIEILDPSDDLLLAKKKTVDIPIVGTVTAGMPILAFDNIEDTFPL 110

Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +A        K +  SM+      GD +I+        GD++ +     +   K   
Sbjct: 111 PLDFAKDKDLFILKVKGESMINAGILDGDFVIIEKRSSARNGDKV-LALIGDEATIKTYY 169

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                   L   N           ++  +  I+
Sbjct: 170 KEED-RFRLQPENEFMDPIY--TKELIILGHIV 199


>gi|330816008|ref|YP_004359713.1| putative phage repressor [Burkholderia gladioli BSR3]
 gi|327368401|gb|AEA59757.1| putative phage repressor [Burkholderia gladioli BSR3]
          Length = 249

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 74/238 (31%), Gaps = 24/238 (10%)

Query: 3   SFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE---GRNRWPSTESI 58
             ++ +I  A +    +R   T   LA  A +     ++ K    E   G+ +    E  
Sbjct: 1   MKTNDEIRRANLTVAIKRFG-TAKKLAEAADVSVAYLSQVKNGQPESRTGKPKNMGDEVA 59

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKE-------------KEIPLLYFPPSGSGGFFD 105
            KI AA  E    +     S  R +                     L Y   S +     
Sbjct: 60  RKIEAALGEPAGWMDADHSSVSRISIDTAEIGSQKTSLSDTFSPSLLHYPVSSKNFRNVF 119

Query: 106 SGVFPTGNKWNTVG----VPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILN 160
                 G     +      P   +      A              SM P +  G+  ++ 
Sbjct: 120 VIGRAQGGLPERIWTDGGYPVGIADEYAEIATADPHAFLVPVVGGSMAPRFNPGEFALIE 179

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            A + +  D +L++  +G  + K L+SRRG  I L S        T    +I W+  +
Sbjct: 180 PATEPDIEDDVLVRLASGVTMLKRLLSRRGGMIRLGSY-AEAETHTFAPEEISWMYYV 236


>gi|319943956|ref|ZP_08018236.1| LexA repressor [Lautropia mirabilis ATCC 51599]
 gi|319742717|gb|EFV95124.1| LexA repressor [Lautropia mirabilis ATCC 51599]
          Length = 263

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 69/254 (27%), Gaps = 39/254 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAG-------------LDPTSFNKSKR 43
           M   +   +++   I    ++    P  + +A   G             L      +   
Sbjct: 1   MRPLTARQREVLAQIQAHLDQTGFPPTRAEIASALGFRSVNAAEDHLKALARKGMIELCA 60

Query: 44  FGIEGRNRWPSTE-SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP------ 96
               G    P+ E S+   +               ++G T  +  + + +          
Sbjct: 61  GTSRGIRLLPAAEGSLEGAIHPAASGTAGHATARGANGTTLTRGGRSVTVRGLGAGAMER 120

Query: 97  --------PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
                    S S      G    G+        E     +     +  D   + +  SM 
Sbjct: 121 AAAAGLLGSSPSISLPLVGRVAAGHPILAESHIEASFTLDASLFERHPDYLLRIRGDSMR 180

Query: 149 PL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDT 206
                 GD+L + +    + G  ++ +    ++  K L        ++L+  N  Y    
Sbjct: 181 DAGMLDGDLLAVKATSDAHNGQIVVAR-LGQEVTVKRLHRNGLNGPVELLPENPAYEPIV 239

Query: 207 VEMS----DIEWIA 216
           V +      IE I 
Sbjct: 240 VPVGTRDFHIEGIG 253


>gi|300713283|ref|YP_003739322.1| DNA polymerase V subunit [Erwinia billingiae Eb661]
 gi|299060354|emb|CAX53604.1| DNA polymerase V subunit [Erwinia billingiae Eb661]
          Length = 142

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
            +  FP+    + V        +      +      +    SM     + GD+++++ + 
Sbjct: 25  CAAGFPSPAA-DYVE--AALDLNELCIRHRAATYFVRASGNSMTDAGIKDGDLMVVDKSE 81

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
           + + GD ++     G+   KVL  R    + L  +N  +P    +   +E    + W
Sbjct: 82  KPSHGDIVIAAVD-GEFTVKVLQLRP--RLALQPMNPAFPTIYPDPDALEIFGVVTW 135


>gi|118497942|ref|YP_898992.1| prophage repressor protein [Francisella tularensis subsp. novicida
           U112]
 gi|194323164|ref|ZP_03056948.1| helix-turn-helix domain protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423848|gb|ABK90238.1| prophage repressor protein [Francisella novicida U112]
 gi|194322528|gb|EDX20008.1| helix-turn-helix domain protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 217

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                              +L +  +G        + P     + + +P+          
Sbjct: 63  PSDTSIITVANVP------VLSYVQAGEFTESQENIDP----IDYLQIPDSL-------- 104

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN  +    +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVI 209


>gi|45658153|ref|YP_002239.1| LexA repressor [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45601395|gb|AAS70876.1| transcriptional repressor (LexA family) [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 206

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 54/210 (25%), Gaps = 30/210 (14%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + K+  +   I  + +     P+   +  + G+                       
Sbjct: 4   MKDLTDKQQAVLAFITAIIKERGFPPTIREIGDEFGITAK-----------------GAY 46

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K +                +       E         P          +F   N  +
Sbjct: 47  DHLKAIEKKGYLKTAKNQSRAIELIRQSPMESLPVQATSIPVIGQVAAGLPIFAEENIES 106

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            + VP+  +  N            + Q  SM+ +    GDI I+        G+ ++   
Sbjct: 107 YIPVPDEMAKGNVP------MYALRVQGDSMIEVGINDGDIAIIEKRDIARNGEIVVALI 160

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
              +   KV    + + I L + N  Y   
Sbjct: 161 -EDEATLKVYYKEQDQ-IRLEARNPKYKPI 188


>gi|254526959|ref|ZP_05139011.1| LexA repressor [Prochlorococcus marinus str. MIT 9202]
 gi|221538383|gb|EEE40836.1| LexA repressor [Prochlorococcus marinus str. MIT 9202]
          Length = 205

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/189 (9%), Positives = 53/189 (28%), Gaps = 8/189 (4%)

Query: 38  FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
             +  +  ++     PS   + + +   +    Q       +      +E +   +    
Sbjct: 16  LYRWIKEYMKNFQHSPSIRQMMQAMGLKSPAPIQSRLKHLQEKGYISWQEGKARTMQIVD 75

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
                    G    G    T    +     + +   +           SM+      GD+
Sbjct: 76  EIIESVPIMGSVAAGGLIETYSDVQDNLDISDVLK-KKNVFALTVNGDSMIDACIADGDM 134

Query: 157 LILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           +++     +  +  G  +           K  + +    I L + N  Y    + + ++ 
Sbjct: 135 VLMEPITDSSSLRNGTIVSALVPGLGTTLKYFVKKE-GKIFLEAANPAYEPIELNLEEVV 193

Query: 214 WIARI--LW 220
           +  ++  +W
Sbjct: 194 FQGKLLAVW 202


>gi|71733236|ref|YP_274592.1| S24 family peptidase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71553789|gb|AAZ33000.1| peptidase, S24 family [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 240

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 19/218 (8%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA---------TNETI 69
           +     + +A K   + +   +     +   NR    E   + +            + ++
Sbjct: 18  QFGGVKAKIAAKLEREASYIARCLSLTVAPENRKKIGEDFARHIEERLGLERYALDSPSL 77

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIRSPHN 128
                     G  +   E     +   P     +        G     V   P+  S   
Sbjct: 78  NAGKRDDAGGGVASSASEPSNVAMIAQPERMYRYPVVSWVTAGTWSEAVQPFPDGFSDRY 137

Query: 129 GI--YAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIV 181
            +  Y  +      + +  SM     P   +G  +++++   V  G  ++     + +  
Sbjct: 138 DVSDYKAKGPAFWLEVKGDSMTSTSAPSIPEGSQILVDTEADVRPGKLVIAKLADSNEAT 197

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K L+   G    L  LN  YP       D + I  ++
Sbjct: 198 FKKLVEDGGVRY-LKPLNPAYPTVQCS-DDCKIIGVVV 233


>gi|169633042|ref|YP_001706778.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii SDF]
 gi|169151834|emb|CAP00666.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii]
          Length = 254

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 33/217 (15%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            LAR  G+ P S +        G+++    E++ +     N     L         +T+ 
Sbjct: 24  ELARAVGVKPPSVSDWL----SGKSKTMEGENLLRASKFLNVNPSWLASGTGEIQTSTKD 79

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN----------------- 128
           K K++ +  F    +    D  +           +P  +                     
Sbjct: 80  KFKQLDIEEFKKKYNISDSDEALL-FSTIIEKPFIPSSKRWVPVKAYSKMGMDGYFTDIG 138

Query: 129 ----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                       +   ++    K    SM P  R G  ++ +    +   + + +  + G
Sbjct: 139 YEGNAGDGYVPTHTAGSRAYAVKGTGDSMFPAIRNGWYVVCDPDADLVPNEFVQVCLKDG 198

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
               K  +   G  + L+S+N        EM ++E I
Sbjct: 199 RCTIKEFVGINGGVLSLLSVNGG-ERFFFEMDEVESI 234


>gi|283470765|emb|CAQ49976.1| phage repressor [Staphylococcus aureus subsp. aureus ST398]
          Length = 243

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 65/242 (26%), Gaps = 33/242 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLA--------RKAGLDPTSFNKSKRFGIEGRNRWPST----- 55
           I E + ++ +  N+T   LA            L     +K +    E R           
Sbjct: 3   IGEGLKKLRKNKNMTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYF 62

Query: 56  ----ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF------- 104
                 ++     T +    +  L        ++                          
Sbjct: 63  NVKINDLYSESNTTYKDDNDITSLYNKLTPPRQENVLNYANEQLEEQNKVTSIDGYKESK 122

Query: 105 ---DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILI 158
                    TG         +I          +T    D        SM P+ ++G    
Sbjct: 123 LVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAF 182

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIAR 217
           +     +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +
Sbjct: 183 IKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGK 240

Query: 218 IL 219
           ++
Sbjct: 241 VV 242


>gi|328949504|ref|YP_004366840.1| putative phage repressor [Treponema succinifaciens DSM 2489]
 gi|328449828|gb|AEB15543.1| putative phage repressor [Treponema succinifaciens DSM 2489]
          Length = 206

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 61/211 (28%), Gaps = 20/211 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           W  + +  +  +     LA  +GL   +            +R PS +    IL   N T 
Sbjct: 7   WTKVKKRLKELDKKQDWLASNSGLLVQTLRN-----NIHNDRLPSLKDTLSILKTLNLTW 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +    P    +   +        +    G     +          + V VP        
Sbjct: 62  EEFEHYPNLTSKDGIRNIPVGEQYFSAGHGQHVPDNYVETK-----DYVAVPNSLKYLGD 116

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                        +  SM P +   DI+I ++    +  + +           K L   +
Sbjct: 117 ------NIRAAYVRGDSMEPTFFDSDIIIYDTNG-YDGNEGIYAIIYNSKGFVKRLQPTK 169

Query: 190 GRSIDLMSLNCCYPVD--TVEMSDIEWIARI 218
              ++++S N  Y     + E  D   I R+
Sbjct: 170 NG-VNIISDNKIYEPMFESSESDDFIVIGRV 199


>gi|309787529|ref|ZP_07682141.1| lexA repressor [Shigella dysenteriae 1617]
 gi|308925107|gb|EFP70602.1| lexA repressor [Shigella dysenteriae 1617]
 gi|323174430|gb|EFZ60055.1| lexA repressor [Escherichia coli LT-68]
 gi|333014426|gb|EGK33777.1| lexA repressor [Shigella flexneri K-227]
          Length = 192

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 3/160 (1%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           P+   I + L   +    +      +     E        +        G    G    G
Sbjct: 16  PTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAG 75

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171
                    E     +        D   +    SM  +    GD+L ++    V  G  +
Sbjct: 76  EPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVV 135

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           + +    ++  K L  + G  ++L+  N  +    V++  
Sbjct: 136 VARID-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 173


>gi|50914370|ref|YP_060342.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394]
 gi|50903444|gb|AAT87159.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394]
          Length = 262

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 65/245 (26%), Gaps = 39/245 (15%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I   I+ +   +NL    LA    +  +SFN+  +         P+  ++ KI     
Sbjct: 17  KIISAKINSLLLENNLKQGHLADALEIPRSSFNEYVKGNS-----LPNPGNVQKIADYFG 71

Query: 67  ETICQLLDLPFSDGRTTE-------------------KKEKEIPLLYFPPSGSGGFFDSG 107
                +        +  E                      ++  +L F         +  
Sbjct: 72  LMKSDIDPRFAPRKKNHELKIPTSPLVKKITTTVVELNVPRKQKVLDFATEQLKEQKNKI 131

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGD 155
                  +      ++ +     Y                 D        SM P Y  G+
Sbjct: 132 TSIEKKLYEYKVYEKLSAGTGYGYFGDGNYDTVFYDEELDYDFASWVFGDSMEPTYVNGE 191

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EW 214
           ++++        G         G    K +   +   + L+SLN  Y       S+    
Sbjct: 192 VVLIKQTGFDYEGGI-YAVEWDGQTYIKKVYREKDG-LRLVSLNKKYNDKFAPFSEGPRI 249

Query: 215 IARIL 219
           I  I+
Sbjct: 250 IGEIV 254


>gi|208779650|ref|ZP_03246995.1| helix-turn-helix domain protein [Francisella novicida FTG]
 gi|208744611|gb|EDZ90910.1| helix-turn-helix domain protein [Francisella novicida FTG]
          Length = 217

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                              +L +  +G        + P     + + +P+          
Sbjct: 63  PSDTSIITVANVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN  +    +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVI 209


>gi|74317501|ref|YP_315241.1| SOS-response transcriptional repressor, LexA [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056996|gb|AAZ97436.1| peptidase S24, LexA repressor [Thiobacillus denitrificans ATCC
           25259]
          Length = 261

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 42/223 (18%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++I   I    +     P  + +A+  G      N +++            +
Sbjct: 62  MRDLTPRQEEILNLIREWIDTTGSPPTRAEIAQHFGFSSP--NAAEQH----------LK 109

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K                         +            G GG    G    G+   
Sbjct: 110 TLAK---------------------KGALELVSGASRGIRLPGGGGLAVVGQVAAGSPIL 148

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K +  SM  +    GD+L ++ + +   G  ++ + 
Sbjct: 149 AQENIERHVQVDTALFSPRADYLLKVRGQSMKDIGILDGDLLAVHRSAEARAGQVVVARI 208

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEWIA 216
              ++  K    R G ++ L+  N  +    V++   ++    
Sbjct: 209 -GDEVTVKRFQKR-GHTVQLLPENADFEPIVVDLKRQELVIEG 249


>gi|134300463|ref|YP_001113959.1| putative prophage repressor [Desulfotomaculum reducens MI-1]
 gi|134053163|gb|ABO51134.1| putative prophage repressor [Desulfotomaculum reducens MI-1]
          Length = 205

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 64/224 (28%), Gaps = 33/224 (14%)

Query: 1   MTSFSHKKIW--EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   +   E +  + E  N     LA    L P + +K     +E     P   +I
Sbjct: 1   MVETTFDILKFSERLKELMENSNYNTYSLAEAVFLTPGTISKYVNAKME-----PKRNTI 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +          L+          +  + +        + +            + +  V
Sbjct: 56  ELLAKHFQVNPAWLMGYDVDKWLDGQAPKAKTIPFIKSANYADNEI--------DGYEVV 107

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E                    QD SM+     +GDI  ++    V  G+   +    
Sbjct: 108 SSSEEIDLS------------FLVQDNSMINARIFEGDIAYISKQSTVENGEIAAVVID- 154

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARI 218
           G I  K L      SI L S N   P   +   +  DI  + ++
Sbjct: 155 GAITLKRLY-MMDNSIVLHSENPTIPDKVLSKKDKKDITILGKV 197


>gi|319775719|ref|YP_004138207.1| hypothetical protein HICON_10620 [Haemophilus influenzae F3047]
 gi|317450310|emb|CBY86526.1| conserved hypothetical protein [Haemophilus influenzae F3047]
          Length = 322

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 69/256 (26%), Gaps = 48/256 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+ S     E +  +     +  +  A   G+   S  K       G  R P    I +
Sbjct: 68  MTTLS-----ERLKALLVEKGINQTEFANMIGIAQPSMQKIL----AGETRNPR--KIVE 116

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94
           I      T   LL    +   +T +  +                          +   L 
Sbjct: 117 IAKELGTTPDYLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLQKQQVSLK 176

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQDT 145
             P+    F                 P      +                        + 
Sbjct: 177 TKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFNE 236

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PV 204
           SM P+  K D++ +++  +   G+ + +     ++  + L       ++ ++ N      
Sbjct: 237 SMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGSS 296

Query: 205 DTV-EMSDIEWIARIL 219
             + ++S +  + R +
Sbjct: 297 FEIDDLSRLNVLGRCV 312



 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 11/79 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+       E +  +    N+T + LA   G    + +   +   + + R     +I +
Sbjct: 1  MTTL-----GERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49

Query: 61 ILAATNETICQLLDLPFSD 79
          I  A       L       
Sbjct: 50 IANALGVDPNWLKYGSTKM 68


>gi|298387177|ref|ZP_06996730.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298259846|gb|EFI02717.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 265

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 26/228 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I + +D       +T     +  G+     ++             S +++ K L+  +
Sbjct: 13  QRILQYLDF----KGITKYECYKNTGITNGVLSQ---------PNGMSEDNLLKFLSYYS 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           +     L          + + K   ++                  G         E+   
Sbjct: 60  DISTDWLLAGCGSMLRDDNQTKISKIIPIESEFESIPIVDISVAAGYGCENPDFIEVVET 119

Query: 127 HNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTG 178
               Y +     +    K +  SM P       LIL         ++      ++  R+G
Sbjct: 120 IRLPYNMLHRNRKYFCVKVRGESMSPTLLDCSYLILRLLDRSEWNEIKDNHVYVVSDRSG 179

Query: 179 DIVAKVL--ISRRGRSIDLMSLN---CCYPVDTVEMSDIEWIARILWA 221
               K +         I   S N     YP   +   +I  I  + W 
Sbjct: 180 RAYVKRIKNRFHEHGFIVCTSDNVDKANYPNFNLMEDEINTILYVEWY 227


>gi|149371840|ref|ZP_01891159.1| transcriptional regulator [unidentified eubacterium SCB49]
 gi|149354980|gb|EDM43541.1| transcriptional regulator [unidentified eubacterium SCB49]
          Length = 256

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 59/218 (27%), Gaps = 17/218 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
               ++ E    T    A+   +  T+    +R   +      S   + ++L        
Sbjct: 10  RRFKKVREEQGYTQQSFAQLLKIGATT-ADIERGKTK-----ISGLVVMELLQQFGINPL 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L    ++     +  +    ++                     +               
Sbjct: 64  WLFGKSYTKVINIDGGDVSPKVVTL-DIEQNETIALVNQKAAAGYPHNIQDVDWYETLPA 122

Query: 131 YAIQ------TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVA 182
           + I             + +  SMLP  R  + ++      +      ++ I      ++ 
Sbjct: 123 FNIPLPQYRNATYRGFQVEGDSMLPNIRPNEWVLGKAVPNVSEASDSKIYIIVLRDSVLV 182

Query: 183 KVLISRRG--RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K L         + L+SLN  Y    V + DI+ +  +
Sbjct: 183 KKLQKVPNSHGKVRLISLNPEYLPIDVSIIDIQEMWLV 220


>gi|253686915|ref|YP_003016105.1| SOS-response transcriptional repressor, LexA [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259494478|sp|C6DKD2|LEXA_PECCP RecName: Full=LexA repressor
 gi|251753493|gb|ACT11569.1| SOS-response transcriptional repressor, LexA [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 202

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKVLTARQQQVYDLIRDHIAQTGMPPTRAEIAQQLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEETGIPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQEHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTEDVRNGQIVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L++ N  +    V++  
Sbjct: 150 D-DEVTVKRLKKQ-GNMVHLLAENEEFAPIVVDLRQ 183


>gi|238920196|ref|YP_002933711.1| repressor protein CI [Edwardsiella ictaluri 93-146]
 gi|238869765|gb|ACR69476.1| repressor protein CI [Edwardsiella ictaluri 93-146]
          Length = 223

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 61/198 (30%), Gaps = 6/198 (3%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            LARK   +P+  ++      + + +  + + +  I +A       +  +          
Sbjct: 25  DLARKISREPSYISRMLYPEGKKQKKRIADDMVEVIESAFGLPRGWMDRINDGYHDEKSI 84

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
                  L+              +   +    +   +     +    +            
Sbjct: 85  SSINKYPLFTTVQAGAFTSTPESYAEKDAKAWIETSKKAGSRSFWLEVDGASMTAPA--- 141

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
              P + +G +++++    V   D  + +    +   K LI   G +  L  LN  +P+ 
Sbjct: 142 GNRPSFPEGMLILVDPDQDVEVNDFCIARVNGNEFTFKKLIRDSGINY-LQPLNPQFPLL 200

Query: 206 TVEMSDIEWIARILWASQ 223
           T       ++ +++  SQ
Sbjct: 201 TCS-DGCTFVGKVIM-SQ 216


>gi|585395|sp|Q07267|LEXA_PRORE RecName: Full=LexA repressor
 gi|297815|emb|CAA50300.1| LexA repressor [Providencia rettgeri]
          Length = 205

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 37/217 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   +++++ +     +  + P  + +A   G                  R P+  
Sbjct: 1   MKALTARQQQVYDLVRDHISQTGMPPTRAEIAASLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                        + I LL    +   G    G    G   
Sbjct: 44  EEHLKALARKGV------------IEIVSGASRGIRLLLEEETEDQGLPLIGRVAAGEPL 91

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +        D   +    SM  +    GD+L ++    V+ G  ++ +
Sbjct: 92  LAQEHIESHYQVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNVHNGQVVVAR 151

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               ++  K    ++G  ++L++ N  +    V++  
Sbjct: 152 I-EDEVTVKRF-KQQGNRVELIAENPEFEPIVVDLRQ 186


>gi|118578636|ref|YP_899886.1| SOS-response transcriptional repressor LexA [Pelobacter propionicus
           DSM 2379]
 gi|118501346|gb|ABK97828.1| SOS-response transcriptional repressor, LexA [Pelobacter
           propionicus DSM 2379]
          Length = 200

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 60/225 (26%), Gaps = 38/225 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +K+ + I    + ++  P+   +A   G+  T                    
Sbjct: 1   MIPLTDRQQKVLDFITSFIKTNSFPPTWRDIAAHLGITST-------------------- 40

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                       + + LD     G           +L      S      G    G+   
Sbjct: 41  ----------FGVNRHLDALEKKGWIKRAGTSRRIVLTSQEVRSISLPIVGTVRAGHLQP 90

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            V   +     +            + +  SM+      GD+ ++      +  D +++  
Sbjct: 91  AVEDIQGFFAVDQEQVKGDGCFLLRVKGDSMIGAGIFDGDLALVRPQPVADNRDTVVVMV 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
             G+   K     +   I L   N       V    D+  + +++
Sbjct: 151 D-GEATLKWFHREQN-RIRLQPANPNMAPIFVGPDKDVSIVGKVI 193


>gi|268591548|ref|ZP_06125769.1| repressor LexA [Providencia rettgeri DSM 1131]
 gi|291313002|gb|EFE53455.1| repressor LexA [Providencia rettgeri DSM 1131]
          Length = 205

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 37/217 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   +++++ +     +  + P  + +A   G                  R P+  
Sbjct: 1   MKALTARQQQVYDLVRDHISQTGMPPTRAEIAASLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                        + I LL    +   G    G    G   
Sbjct: 44  EEHLKALARKGV------------IEIVSGASRGIRLLLEEETEDQGLPLIGRVAAGEPL 91

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +        D   +    SM  +    GD+L ++    V+ G  ++ +
Sbjct: 92  LAQEHIESHYQVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNVHNGQVVVAR 151

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               ++  K    ++G  ++L++ N  +    V++  
Sbjct: 152 I-EDEVTVKRF-KQQGNRVELIAENPEFEPIIVDLRQ 186


>gi|153954271|ref|YP_001395036.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347152|gb|EDK33688.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 207

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 24/215 (11%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + E +NLT   +A    L   + +K +   ++     P+ E++  +    N +I  
Sbjct: 6   RLRELREENNLTQGAIASILNLTKANISKYELGRLQ-----PNIETLKLLSDHFNVSI-- 58

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
              +  ++ +  E        ++         F +        +     PE  S +   +
Sbjct: 59  DYLIGVTNIKKVESNYLSRIPIFQITKNHPSLFIAENIS---GYEYFDKPEELSKNYFFF 115

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            I+                  K D++ +     +     +LI+ +   I+ + ++     
Sbjct: 116 KIEDNSM--------SNARIFKDDLVCIYKQDHIEDNKLMLIQVKNMGIILRRVLKCGDS 167

Query: 192 SIDLMSLNCCYPVDTVEMSDIE-----WIARILWA 221
            I L   N  Y    +   D+E      I + ++ 
Sbjct: 168 LIIL-PENHKYRPIALSKKDLEEDSFKVIGKAVYV 201


>gi|126010900|ref|YP_001039870.1| putative repressor protein [Vibrio phage VP882]
 gi|123203910|gb|ABM73422.1| putative repressor protein [Vibrio phage VP882]
          Length = 243

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 23/218 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
              I R+ +    T   +  +    +     ++ +R  +      PS      I  +   
Sbjct: 31  GNVIRRLRKAKGWTLQRVCEEMNGAIQTGHLSRIERGELT-----PSVYIARNIARSLGT 85

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSP 126
           ++  +L             +    +       +G +  S         +  V  P     
Sbjct: 86  SLDTMLAEADGGPLAQVVPDPAQRVPVLSWVQAGLWTSSPTGVVPELCDKWVVAPRA--- 142

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRT-GDIV 181
                 +  +    + +  SM       + +G  +I++          ++       +  
Sbjct: 143 -----KLPPRCYALEVRGDSMQAQYGMSFPEGCYIIVDPNRVPENKSFVVAMQTNAEEAT 197

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K LI        L  LN  YP+  ++  ++     ++
Sbjct: 198 FKQLIIEGADKY-LKPLNPQYPLLKID-QEVITCGVVI 233


>gi|300724726|ref|YP_003714051.1| SOS response transcriptional repressor [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631268|emb|CBJ91963.1| transcriptional repressor for SOS response (signal peptidase of
           LexA family) [Xenorhabdus nematophila ATCC 19061]
          Length = 205

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 37/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   ++++  +     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTARQQQVYNLVRDHISQTGMPPTRAEIAARLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                        + I LL    +   G    G    G   
Sbjct: 44  EEHLKALARKGV------------IEIISGASRGIRLLREAENEGAGLPLIGRVAAGEPL 91

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +      + D   +    SM  +    GD+L ++    V+ G  ++ +
Sbjct: 92  LAQEHIESHYKVDPELFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVHNGQVIVAR 151

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
               ++  K    + G  I+L++ N  + +  V++S
Sbjct: 152 I-EDEVTVKRF-RQAGNRIELIAENPEFELIVVDLS 185


>gi|238912035|ref|ZP_04655872.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 139

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 7/129 (5%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            +  +   L          +     FP+    + +   +    +  + +  +     K  
Sbjct: 1   MEFFRPTELREIIYLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAT 57

Query: 144 DTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM+      GD+L+++S+     GD ++     G+   K L  R   ++ L  +N  Y
Sbjct: 58  GDSMIDAGINDGDLLVVDSSRTAEHGDIVIAAVD-GEFTVKRLQLRP--TVQLNPMNSAY 114

Query: 203 PVDTVEMSD 211
               V   D
Sbjct: 115 SPIIVGSED 123


>gi|294827875|ref|NP_711628.2| transcriptional repressor LexA [Leptospira interrogans serovar Lai
           str. 56601]
 gi|29427775|sp|Q8F663|LEXA_LEPIN RecName: Full=LexA repressor
 gi|73920224|sp|P61611|LEXA_LEPIC RecName: Full=LexA repressor
 gi|293385720|gb|AAN48646.2| transcriptional repressor LexA [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 203

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 54/210 (25%), Gaps = 30/210 (14%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + K+  +   I  + +     P+   +  + G+                       
Sbjct: 1   MKDLTDKQQAVLAFITAIIKERGFPPTIREIGDEFGITAK-----------------GAY 43

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K +                +       E         P          +F   N  +
Sbjct: 44  DHLKAIEKKGYLKTAKNQSRAIELIRQSPMESLPVQATSIPVIGQVAAGLPIFAEENIES 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            + VP+  +  N            + Q  SM+ +    GDI I+        G+ ++   
Sbjct: 104 YIPVPDEMAKGNVP------MYALRVQGDSMIEVGINDGDIAIIEKRDIARNGEIVVALI 157

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
              +   KV    + + I L + N  Y   
Sbjct: 158 -EDEATLKVYYKEQDQ-IRLEARNPKYKPI 185


>gi|291615809|ref|YP_003518551.1| LexA [Pantoea ananatis LMG 20103]
 gi|291150839|gb|ADD75423.1| LexA [Pantoea ananatis LMG 20103]
          Length = 252

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 38/214 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   +++++ I     +  + P  + +A + G                  R P+  
Sbjct: 49  MKALTSRQQQVYDLIRDHINQTGMPPTRAEIAAQLGF-----------------RSPNAA 91

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                             L      S G    G    G   
Sbjct: 92  EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEPSEGLPLIGRVAAGEPL 138

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +      + D   +    SM  +    GD+L ++    V  G  ++ +
Sbjct: 139 LAQEHIETHYKVDPDMFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 198

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
               ++  K    + G  + L+  N  +    V+
Sbjct: 199 ID-DEVTVKRWKKQ-GSVVHLLPENNDFEPIVVD 230


>gi|295099517|emb|CBK88606.1| Predicted transcriptional regulator [Eubacterium cylindroides
           T2-87]
          Length = 238

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 60/222 (27%), Gaps = 19/222 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I + I     R  ++   L+   G     ++  + +             + +  I     
Sbjct: 15  IGKQIKEGRTRKGISLDTLSDLIGGIKTKSTLKRYEDGNSR-----IEMDVLKMICDQIG 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRS 125
                ++          + +      +                  G+    +   P+   
Sbjct: 70  LDYLDVISKARESLNKDQVETLSK--VNIIFDDYFPLHYCTNLSAGSPTELLEAEPDAVV 127

Query: 126 PHNGIYAIQTQ-DTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVA 182
                +  + +     +   TSM  + + G I++        +  G  ++     GD   
Sbjct: 128 YVPIKFQNRKKRLHAFQVNGTSMNNVIQDGSIVVAEEVPDTVLKEGTIVV-AWLNGDATV 186

Query: 183 KVLISRRGRSIDLMSLNCC--YPVDTV--EMSDIEWIARILW 220
           K L       + LM  +    +    +  +   I  + R++W
Sbjct: 187 KRLYP-GDSQVTLMPDSTDKGHQPIIINTDEDQIYILGRVIW 227


>gi|319956938|ref|YP_004168201.1| phage repressor [Nitratifractor salsuginis DSM 16511]
 gi|319419342|gb|ADV46452.1| putative phage repressor [Nitratifractor salsuginis DSM 16511]
          Length = 200

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 54/214 (25%), Gaps = 33/214 (15%)

Query: 3   SFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             +H+K    +  +         + LA     D    ++          +      +  +
Sbjct: 1   MKTHEK----LKMLLREKGRGAQTKLAEMLNEDKGFVSRWVSG-----KQEIPKSKLKAV 51

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               N T+               ++      +      S G      +        + VP
Sbjct: 52  ANYLNVTV--------DYLLDETQEIPLNRYIPLIGEASCGVPTGAFY---ESDEYIAVP 100

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                        +     K    SM P    G+I++ ++    +    ++     G+  
Sbjct: 101 PGVDA--------SSSYAVKASGDSMWPTIADGEIVVCDTKRPPSDNS-VVHYTFDGESG 151

Query: 182 AKVLISRRGRSIDLMSLNCCYP---VDTVEMSDI 212
            K +  +   S+ L+  N          +    +
Sbjct: 152 IKRVKRQSDGSVILLPDNTSCEGCTPIVIPKDRV 185


>gi|153818456|ref|ZP_01971123.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio
           cholerae NCTC 8457]
 gi|126511015|gb|EAZ73609.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio
           cholerae NCTC 8457]
          Length = 242

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 30/228 (13%)

Query: 7   KKIWEAIDRMAERHN----LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           ++I    +R+ E       L+    A+K+G+         R        +PS + +  I 
Sbjct: 21  ERIIRFKERLVEVIGDEAVLS---FAKKSGMSEGVMRSYIRGDT-----FPSLDRLEAIA 72

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--- 119
            A    +  L     +  +  E   ++  ++                  G     V    
Sbjct: 73  NAAEVDLNWLATGKEATRQLVEAPVRKDNVVEVVQ-------YDFRASAGAGCLIVSENP 125

Query: 120 ---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKP 175
                  R             T  +    SM P     D++++          D + +  
Sbjct: 126 VAKFEFSREWLIKQGLNGKHLTVVEVYGDSMEPTLMDEDLMLVEVVDDPKQARDGVCVFR 185

Query: 176 RTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219
              +++ K +          + S N  Y    +        + + R++
Sbjct: 186 IDDEVMVKRVQYDFASGGYHVTSDNTAYSPFFIGKEFEGRFQLLGRMV 233


>gi|325918520|ref|ZP_08180636.1| SOS-response transcriptional repressor, LexA [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535255|gb|EGD07135.1| SOS-response transcriptional repressor, LexA [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 201

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 69/215 (32%), Gaps = 35/215 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT    K+  +   + +   +  ++PS   +A+  G          R   +   +  +  
Sbjct: 1   MTPLPPKRAAVLAFLQQ-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++L                 G         +P+L    +G          P G    
Sbjct: 53  GLIELLPN-------QKRGIRVPGGAGRDALLALPVLGRVAAG---------VPIGA--- 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +G+         +++++      K Q  SM+      GD++ ++ + +   G  ++ + 
Sbjct: 94  DIGLERQLWLDRTLFSLRPD-YLLKVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G+I  K L       I L+  N  +    V   
Sbjct: 153 D-GEITIKRLER-GPERIRLLPRNRAHAPIVVAAD 185


>gi|242240801|ref|YP_002988982.1| LexA repressor [Dickeya dadantii Ech703]
 gi|242132858|gb|ACS87160.1| SOS-response transcriptional repressor, LexA [Dickeya dadantii
           Ech703]
          Length = 203

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 37/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTTRQQQVYDLIRDHISQTGMPPTRAEIASQLGF-----------------RSPNAA 43

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         + L      G           +         G    G    G    
Sbjct: 44  E-------------EHLKALARKGVIEIVTGASRGIRLLMEEEDQGLPLIGRVAAGEPLL 90

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 91  AQQHIECHYQVDPAMFKPNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L++ N  +    V++ +
Sbjct: 151 -EDEVTVKRLKKQ-GNIVQLLAENKDFEPIVVDLRE 184


>gi|332678658|gb|AEE87787.1| prophage repressor protein [Francisella cf. novicida Fx1]
          Length = 217

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHLEVMRILGLKDNYC 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                              +L +  +G        + P     + + +P+          
Sbjct: 63  PSDTSIITVANVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN  +    +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVI 209


>gi|218890078|ref|YP_002438942.1| hypothetical protein PLES_13381 [Pseudomonas aeruginosa LESB58]
 gi|218770301|emb|CAW26066.1| hypothetical protein PLES_13381 [Pseudomonas aeruginosa LESB58]
          Length = 251

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 60/248 (24%), Gaps = 30/248 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +  +   A+  +AE+   T    A +   +PT  ++                 I +
Sbjct: 1   MIDITTIRRANAL-TLAEKEGGTV-AFAARIDREPTQVSRLIGSNPTKNIGNRLARHIEE 58

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKE------------IPLLYFPPSGSGGFFDSGV 108
                   +                 E                    P      +FD   
Sbjct: 59  KFNMPRGWLDIQHTPEQQLRVAEPTAEYHSGGNLEPLSPWSDGDPLAPDEVEIPYFDEVE 118

Query: 109 FPTGNKWN--------TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
              G             +  P+       +   ++          SM PL   G I+ ++
Sbjct: 119 VAAGGGRVPDLELAKRKIRFPKATLREAAV--DKSTSVCVNVTGNSMEPLIADGAIIGVD 176

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD-----IEW 214
            ++       +        +  K +    G  I L S N   YP +           I  
Sbjct: 177 LSVNTIVDGEIYALKHDDLLRVKFVYRLPGGGIRLRSYNRDEYPDEEYTRDQMRAGGISV 236

Query: 215 IARILWAS 222
           I  + W S
Sbjct: 237 IGWVFWWS 244


>gi|168705638|ref|ZP_02737915.1| LexA repressor [Gemmata obscuriglobus UQM 2246]
          Length = 243

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 58/217 (26%), Gaps = 31/217 (14%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + I+  I +  E     P+   +  + G+                           ++
Sbjct: 44  KQQSIYNYIRKHIEEKGFPPAIRDICTEFGISSP----------------------NGVM 81

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                   +        G  ++K +     +    SG       GV   G    +    +
Sbjct: 82  CHLKALQTKGYINRVQKGENSQKAQARGITIPGVTSGGFSLPFVGVVAAGKAIESAE--D 139

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
            +                K + TSM       GD +++  A     G++++       + 
Sbjct: 140 DQRLEMRELFGSEDLFVVKVRGTSMIEGHIADGDFVVIRKAETCENGEKVVAMIEKA-MT 198

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEWIA 216
            K    ++   I L  +N       V+    DI  + 
Sbjct: 199 LKKYYKKKNE-IQLHPMNSTMEPIIVDPSREDIRILG 234


>gi|26989752|ref|NP_745177.1| transcriptional repressor pyocin R2_PP [Pseudomonas putida KT2440]
 gi|24984646|gb|AAN68641.1|AE016494_1 pyocin R2_PP, transcriptional repressor, CI/C2 family [Pseudomonas
           putida KT2440]
          Length = 243

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 25/208 (12%)

Query: 29  RKAGLDPTS--FNKSKRFGIEG--------------RNRWPSTESIFKILAATNETICQL 72
           +  G+  T+   +K                      R  W     + K     N  + QL
Sbjct: 38  KMVGVHKTTQAISKWLNGEAIAEADSMAALCAWLNVRREWLEYGVLPK-AQEPNSKVHQL 96

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                S+     ++  ++PL+ +  +G+     S   P     + +  P   S       
Sbjct: 97  QVGDQSNVSGILERFGKVPLISWVQAGAWCEAISNFEP-YQADSWLSCPVPISDSGYALK 155

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGR 191
           +      +     S    Y  G I+ ++  ++ N GDR++ + PRT ++  KVL+S  GR
Sbjct: 156 VLGDSMTNPGPGRS----YPTGCIIFVDPEVEANTGDRVIARVPRTNEVTFKVLVSDAGR 211

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              L  +N  YP+  +   +     +++
Sbjct: 212 QF-LRPINPQYPIIDIT-EETHICGKVV 237


>gi|296100669|ref|YP_003610815.1| LexA repressor [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055128|gb|ADF59866.1| LexA repressor [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 202

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVFDLIRDHIGQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLVEEETGIPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPGMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G ++ L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNTVQLLPENNEFSPIVVDLRE 183


>gi|298244997|ref|ZP_06968803.1| transcriptional repressor, LexA family [Ktedonobacter racemifer DSM
           44963]
 gi|297552478|gb|EFH86343.1| transcriptional repressor, LexA family [Ktedonobacter racemifer DSM
           44963]
          Length = 217

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 51/192 (26%), Gaps = 12/192 (6%)

Query: 38  FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
            N  KR G+   NR    E    I +  +      +    S      KK + I L+    
Sbjct: 18  VNYMKREGMPPTNREIGRE--LGIASTGHVDYHLTMLEKKSLIIRQPKKSRGIKLVKQDE 75

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDI 156
           S   G    G    G   +       R      +           +  SM       GD 
Sbjct: 76  SVPAGIPLVGTIAAGEPLDIYADGSQRIDMGRDFIDSENCYALIVKGRSMIEDHICDGDY 135

Query: 157 LILNSAIQVNCGDRLLIKPRTGD----IVAKV-LISRRGRSIDLMSLNCCYPVDTVEMS- 210
           +++        GD ++   +          K     +    + L   N       +  S 
Sbjct: 136 VVIQPQHICQNGDIVVAVHKFEGESGSATLKRFFQEKDHDRVRLQPANSELDPILIPKSI 195

Query: 211 ---DIEWIARIL 219
              + E   +++
Sbjct: 196 WDREWEIQGKVV 207


>gi|270262434|ref|ZP_06190705.1| protein UmuD [Serratia odorifera 4Rx13]
 gi|270043118|gb|EFA16211.1| protein UmuD [Serratia odorifera 4Rx13]
          Length = 140

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 14/144 (9%)

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
                 +E  +    L  F    + GF            + V           +      
Sbjct: 1   MMFISPSEDNKTTPALPLFADPVACGFPSPAQ-------DYVE--ARLDIGKLLVRHPNA 51

Query: 137 DTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
               +    SM     + GD+LI++S+++   G+ ++     G+   K L       + L
Sbjct: 52  TYFVRASGDSMVEGNIKDGDLLIVDSSLRAEHGNIVIAAID-GEFTVKKLQRHPD--LRL 108

Query: 196 MSLNCCYPVDTVEMSD-IEWIARI 218
           + +N  Y        D +E    +
Sbjct: 109 LPMNPAYAPIVFGDEDALEIFGVV 132


>gi|6491870|gb|AAF14052.1|AF039836_1 MucA [IncT plasmid R394]
          Length = 145

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 101 GGFFDSGVFPTGN-KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
            G      FP+    W    +    + H  +          +    SM       GD+L+
Sbjct: 19  FGELVPAGFPSPAAGWEEAEL----NLHTLVVTHPASTYFLRVTGDSMQDARIHSGDVLV 74

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWIA 216
           ++ +     G  ++      +   K LI R      LM +N  YP    +    D+E   
Sbjct: 75  VDRSETPEQGSIVVASID-NEFTVKKLILRP--RPCLMPMNPAYPPIYFDPESNDVEIWG 131

Query: 217 RI 218
            +
Sbjct: 132 VV 133


>gi|92112828|ref|YP_572756.1| putative prophage repressor [Chromohalobacter salexigens DSM 3043]
 gi|91795918|gb|ABE58057.1| putative prophage repressor [Chromohalobacter salexigens DSM 3043]
          Length = 157

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H     ++      + +  SM+      GDI+I+        G+  ++     ++  K L
Sbjct: 55  HVPSRMVRRNTYALRVRGDSMIDCNIFDGDIIIIERFESAENGETAVVLINNQEVTLKKL 114

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   + L   N   P   ++  D++ +  ++
Sbjct: 115 FIEKSG-VRLQPANDDMPPIYLKNDDVQVLGLVM 147


>gi|322507694|gb|ADX03148.1| Putative repressor protein from bacteriophage [Acinetobacter
           baumannii 1656-2]
          Length = 243

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 65/216 (30%), Gaps = 31/216 (14%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            LAR  G+ P S +        G+++    E++ +     N     L         +T  
Sbjct: 13  ELARAVGVKPPSVSDWL----SGKSKTMEGENLLRASKFLNVNPSWLASGTGEIQSSTRD 68

Query: 86  KEKEIPLLYFPPSGSGGFFDSG-----------------VFPT---------GNKWNTVG 119
           K K++ +  F    +    D                     P          G   +   
Sbjct: 69  KFKQLDIEAFKKKYNISDSDEALLFSTIIEKPFTPSSKRWVPVKAYSKMGMDGYFTDMGY 128

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                  +   ++   +    K    SM P  R G  ++ +    +   + + +  + G 
Sbjct: 129 EGNAGDGYVPTHSAGPRAYGIKGTGDSMFPAIRNGWYVVCDPDADLVPNEFVQVCLKDGR 188

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
              K  +   G  + L+S+N        EM ++E I
Sbjct: 189 CTIKEFVGINGGVLSLLSVNGG-ERFFFEMDEVESI 223


>gi|161503561|ref|YP_001570673.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864908|gb|ABX21531.1| hypothetical protein SARI_01639 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 139

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 7/129 (5%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            +  +   L          +     FP+    + V   +    +  + +        K  
Sbjct: 1   MEFFRPTELPGIISLPFFSYLVPCGFPSPAA-DYVE--QRIDLNELLVSHPGSTYFVKAT 57

Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM       GD+L+++S+     GD ++     G+   K L  R   ++ L  +N  Y
Sbjct: 58  GDSMIEAGISDGDLLVVDSSRTAEHGDIVIAA-VGGEFTVKRLQLRP--TVQLNPMNSAY 114

Query: 203 PVDTVEMSD 211
               +   D
Sbjct: 115 SPIIIGSED 123


>gi|307243939|ref|ZP_07526064.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492761|gb|EFM64789.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis
           DSM 17678]
          Length = 227

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 64/220 (29%), Gaps = 17/220 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +    +  +++   L++ + ++  + +         +        +  IL    E + 
Sbjct: 8   NRLKAAMKNKSISQYSLSKISCINRGTISSYMSGKYLPKQDKIFI--LADILEVNPEWLA 65

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
              D        T+    +  L+   P    G           + + + +  I     G 
Sbjct: 66  CNSDSMDRIDLNTQSTFDDGLLINSYPFVDAGVSAGLANEIEAQQD-IDLVNIPDLLLGR 124

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLIS 187
           YA +      +    SM  +   G ++ L + +     + GD ++      +   K    
Sbjct: 125 YAGRKDLLLMRVNGESMNRVIPNGSLIGLITNVSPSSLSNGDIVV-FSNNYEYSVKRFFK 183

Query: 188 -RRGRSIDLMSLNCCYP----VDTVEMSD---IEWIARIL 219
            ++ +          Y        +   +   +  I +++
Sbjct: 184 DKKNKRYIFSPD--SYETCFDDIIIPFDNSDGLNIIGKVI 221


>gi|260463034|ref|ZP_05811237.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
 gi|259031155|gb|EEW32428.1| putative phage repressor [Mesorhizobium opportunistum WSM2075]
          Length = 234

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 60/223 (26%), Gaps = 19/223 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+  AI +  ++  L    +A     D  +    +          P TE++ K  A    
Sbjct: 12  KVGAAIRQARKQRGLVMRHIAEHNDTDVAAVGNWETGRN-----LPKTENLLKTAAFLRV 66

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE----- 122
               L                +  ++        G  D  +       +           
Sbjct: 67  DPVALGQGQVVFLDDAG-PVADAEIVTDAGPLPAGPMDIELLGAAVGGDDGDFTFNGEVA 125

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--- 179
                    A   +         SM+P Y  G++L          GD ++I+    +   
Sbjct: 126 GYVQRPPGIAHLRKVFALHVLSDSMVPRYEPGEMLYCG-GRDAVPGDHVVIETFPEENER 184

Query: 180 ---IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 K L+ R    + +   N      T     I+ + R++
Sbjct: 185 NGKAFIKKLVKRTAGELVVEQYNP-PKTLTFNRYAIKHVWRVI 226


>gi|183600458|ref|ZP_02961951.1| hypothetical protein PROSTU_04034 [Providencia stuartii ATCC 25827]
 gi|188019942|gb|EDU57982.1| hypothetical protein PROSTU_04034 [Providencia stuartii ATCC 25827]
          Length = 207

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 64/217 (29%), Gaps = 35/217 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   +++++ +     +  + P  + +A   G                  R P+  
Sbjct: 1   MKALTARQQQVYDLVRDHISQTGMPPTRAEIAASLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                  +   +   + L         G    G    G   
Sbjct: 44  EEHLKALARKGVIEI----------VSGASRGIRLLLEEENDPEIQGLPLIGRVAAGEPL 93

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +        D   +    SM  +    GD+L ++    V  G  ++ +
Sbjct: 94  LAQEHIESHYQVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 153

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               ++  K    ++G  ++L++ N  +    V++  
Sbjct: 154 I-EDEVTVKRF-KQQGNRVELIAENPEFAPIIVDLRQ 188


>gi|303328406|ref|ZP_07358843.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3]
 gi|302861400|gb|EFL84337.1| peptidase, S24 family [Desulfovibrio sp. 3_1_syn3]
          Length = 211

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 73/229 (31%), Gaps = 30/229 (13%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S+  + + +  + ER     + L R A  DP +  KSK +   G    P  +++ + L
Sbjct: 1   MESYDILKKQVGELLERMGGNKADLMRLATADPEN-EKSKFYKFLGGQSIPQGDALVEWL 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                TI             T   EK       P   +       +  +G         E
Sbjct: 60  VRMGFTI-------------TPPDEKLQGYAMIPKVRAIAGAGESLVTSGKVTGQYAFRE 106

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGD 179
                  I+    +         SM PL R+GD ++++      ++  G  + +      
Sbjct: 107 SFLEREHIH--PEKCVLMCVAGDSMEPLIREGDTILVDESEKGKELRDG-YIFVVGLNDA 163

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---------IEWIARIL 219
           ++ K L         L S N   P   V+  D         + W  R++
Sbjct: 164 LMVKRLAKIPNG-WRLCSENKERPDIDVQGDDFNTFRVYGRVRWFGRVV 211


>gi|270614132|ref|ZP_06221718.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
 gi|270318000|gb|EFA29286.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
          Length = 183

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 41/125 (32%), Gaps = 2/125 (1%)

Query: 100 SGGFFDSGVFPTGNKWNT-VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
               F+       N +   + +   ++                    SM P+   G  + 
Sbjct: 56  GWIAFEGMDANVKNGFEHKIKLRFSKATLRKQGVQYENAVCVIADGNSMEPVIPDGTTVG 115

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSDIEWIAR 217
           ++   +     ++      G +  K+L +     + + S N   +P +  E+ DI  + +
Sbjct: 116 IDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYNTEEHPDEIAELQDISVLGK 175

Query: 218 ILWAS 222
           + W S
Sbjct: 176 VFWYS 180


>gi|148548161|ref|YP_001268263.1| putative prophage repressor [Pseudomonas putida F1]
 gi|148512219|gb|ABQ79079.1| putative prophage repressor [Pseudomonas putida F1]
          Length = 158

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILNSAIQV 165
             P G         E     + ++ ++       K +  SM       GDI+I++   + 
Sbjct: 38  HVPAGFPSPAADHLESHISLDELFDLRAPHVYLVKVEGDSMQGAGIYSGDIVIVDRGREA 97

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             GD ++    + + V K L  R    + L S N  YP   +   D   +  ++  S
Sbjct: 98  EHGDIVIAAVNS-EPVCKRLHRR-DGVVILKSENTAYPPRYIMEGDDLVVWGVVRYS 152


>gi|253682017|ref|ZP_04862814.1| repressor LexA [Clostridium botulinum D str. 1873]
 gi|253561729|gb|EES91181.1| repressor LexA [Clostridium botulinum D str. 1873]
          Length = 202

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 39/225 (17%)

Query: 1   MTSFSHK---KIWEAIDRMAERHNLTPS--GLARKAGLDPTS--FNKSKRFGIEGRNRWP 53
           M+  S     +I+E I     +    PS   + +  GL  TS   +   +   +G  R  
Sbjct: 1   MSRSSEDKQMEIYEFIKTQIVQKGYPPSVREICKGVGLSSTSSVHSHLSKLEKKGLIRRD 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           ST+                            K+      +   P          +    N
Sbjct: 61  STK---------------------PRTIEILKEPMIRKEMVNIPIVGKVTAGMPILAVEN 99

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +T  +     P N            K    SM+      GD  I+      + G+ ++
Sbjct: 100 IEDTFPISLNFIPKN------KDLFILKVSGESMIDAGILDGDFAIIEKVDYASDGEIVV 153

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
                 +   K     +   I L   N       V+  D + + +
Sbjct: 154 ALID-NEATLKRFFKEKD-HIRLQPENQTMESIIVK--DCKILGK 194


>gi|25011270|ref|NP_735665.1| hypothetical protein gbs1221 [Streptococcus agalactiae NEM316]
 gi|23095694|emb|CAD46880.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 262

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/255 (10%), Positives = 65/255 (25%), Gaps = 45/255 (17%)

Query: 3   SFSHKKI------WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
             + ++I         ++ +    +     L++  G+ P++     +         P   
Sbjct: 7   KLTPQEIEALRFFSSKLNDLLNETSTKQVELSKATGIPPSTLTGYVKGTS-----LPIPG 61

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTE-------------------KKEKEIPLLYFPP 97
           ++ KI          +        +  E                      ++  +L +  
Sbjct: 62  NVQKIADYFGLMKSDIDPRFAPRKKKHELKIPTSPLVNKITKTVVELNVPRKQQVLDYAT 121

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDT 145
                  +         +      ++ +     Y                 D        
Sbjct: 122 EQLKEQKNKITSIEETLYEYKVYEKLSAGTGYGYFGDGNYDTVFYDEQLDYDFASWVFGD 181

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           SM P Y  G++ ++        G  +      G    K +   +G  + L+SLN  Y   
Sbjct: 182 SMEPTYLNGEVALIKQTGFDYDG-AIYAVEWDGQTYIKKVFREKGG-LRLVSLNKKYKDK 239

Query: 206 TVE-MSDIEWIARIL 219
                 D   I +++
Sbjct: 240 FAPFSEDPRIIGKVV 254


>gi|307151336|ref|YP_003886720.1| transcriptional repressor, LexA family [Cyanothece sp. PCC 7822]
 gi|306981564|gb|ADN13445.1| transcriptional repressor, LexA family [Cyanothece sp. PCC 7822]
          Length = 202

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 51/190 (26%), Gaps = 8/190 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I      PS   + K +   +    Q            +  E +   + 
Sbjct: 8   QQELYDWLCEYIRTSQHAPSIRQMMKAMNLRSPAPIQSRLERLRSKGYIDWTEGKARTIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSM-LPLYR 152
                + G    G    G         +++   +   +  +      +    SM   L  
Sbjct: 68  ILHQPAVGIPIHGSIAAGGLVE--PFTDVQEKLDLTSFFQKPHWFALRVTGDSMIEDLIT 125

Query: 153 KGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           +GD++I+        +  G+ +  +        K    + G  + L   N  Y    + +
Sbjct: 126 EGDLVIMRPRNPDENLKNGEIVAARVDGHGTTLKRYY-QEGEKVTLKPSNPKYNPIIIPL 184

Query: 210 SDIEWIARIL 219
             +E    ++
Sbjct: 185 HQVEIQGILV 194


>gi|239993697|ref|ZP_04714221.1| LexA repressor [Alteromonas macleodii ATCC 27126]
          Length = 208

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 32/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ E I        + P  + +AR+ G                R+   + E
Sbjct: 1   MRPLTARQTEVLELIKTTMLETGMPPTRAEIARQLGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                     T +  K    L        G    G    G    
Sbjct: 46  HLKALARK----------GVIEILPGTSRGIKLNIPLDNDAQEEEGLPLIGRVAAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V+ G  ++ + 
Sbjct: 96  AQEHVESHYKVDPALFQPHADFLLRVNGMSMKDIGILDGDLLAVHRTTDVHNGQVVVARV 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  R GR + L + N  +    V+++
Sbjct: 156 D-EDVTVKRLEKR-GREVLLHAENDEFAPIKVDLA 188


>gi|78358014|ref|YP_389463.1| SOS mutagenesis protein UmuD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220419|gb|ABB39768.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 208

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 8/171 (4%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           P+  ++                             +         + +           G
Sbjct: 35  PAAHALRPSRTRDAVPAHAHTGGADGLHMLAGAVPQHEGAEKIRHAAADRPLMLSCVAAG 94

Query: 113 ---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
                 + +        +  +          +    SM       GDIL+++ A+Q   G
Sbjct: 95  FPSPADDYID--RRLDLNEYLVRNPESTFYVRVHGESMRDAGIWAGDILVVDRAVQPATG 152

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            R++I    G++  K L  + G  + L+  N  Y    V   +   +  ++
Sbjct: 153 -RVVIAVLDGELTVKRL-KKEGDRLLLVPENPDYSPVDVSGREDFSVWGVV 201


>gi|88803785|ref|ZP_01119308.1| transcription regulator [Polaribacter irgensii 23-P]
 gi|88780313|gb|EAR11495.1| transcription regulator [Polaribacter irgensii 23-P]
          Length = 257

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 59/218 (27%), Gaps = 8/218 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             + + I  +     LT   LA +  +  +  +  +         +    S +  +    
Sbjct: 2   NNLSKNIKHLRTLKKLTQESLAEELSVTRSRISSYEENRSSPTIDFLIDFSAYFRIPIDI 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEIR 124
                L             K    P+     + +           G    ++     E  
Sbjct: 62  IIKNDLSKAKDVSFIDVGNKRVLFPIAVDQDNENLIEVIPAKASAGYLLGYDDPEYIEQL 121

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIV 181
                 +  + +      +  SMLP+ + G  ++   +        G   ++  +   + 
Sbjct: 122 EKIKLPFLPKGKHRAFPIKGDSMLPM-KDGSYVVAEFVEDIKAAKSGCSYIVVTKDDGMT 180

Query: 182 AKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            K L       +S  L   N  Y    V + ++  + +
Sbjct: 181 YKRLENQVEEKQSFLLKPDNTSYQSYEVPVVEVLELWK 218


>gi|78485578|ref|YP_391503.1| putative prophage repressor [Thiomicrospira crunogena XCL-2]
 gi|78363864|gb|ABB41829.1| S24 family peptidase [Thiomicrospira crunogena XCL-2]
          Length = 153

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 132 AIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
            ++ +    + + +SM       GDI+I+        G+ ++++    ++  K     + 
Sbjct: 60  MVRKETFALRVKGSSMIEENIEDGDIVIIERRSTAENGESVVVRINNEEVTMKKFYIEKN 119

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             I L   N       +   +IE +  +
Sbjct: 120 G-IRLQPANADMEPIYITNENIEILGIV 146


>gi|327490807|gb|EGF22588.1| hypothetical transcriptional regulator [Streptococcus sanguinis
           SK1058]
          Length = 231

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 53/217 (24%), Gaps = 14/217 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +     +  L    +  K  +   +++  ++   + +    + + +  IL        +L
Sbjct: 11  LKNRRLKLGLRQVDIIEKLNVSKQAYSAWEKG--KIKPSQDNLKKLETILKVPEGYFTEL 68

Query: 73  LDLPFSDGRTTEKKEKEIPLL---------YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                        ++K    +                  +                  ++
Sbjct: 69  EIATLYKKLNKPNQQKAKIYVEDLLETQKSKVQSIKKERYEYHVYEKMSAGIGASIYGDV 128

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                        D        SM P Y+ G + ++        G  +           K
Sbjct: 129 NYDTVYFDEEFAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNSQTYIK 187

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            +       + L+S+N  Y    +    D   +  I+
Sbjct: 188 RVFREEDG-LRLVSINQKYKDIFIPYEDDPRVVGVIV 223


>gi|296106561|ref|YP_003618261.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Legionella pneumophila 2300/99 Alcoy]
 gi|295648462|gb|ADG24309.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Legionella pneumophila 2300/99 Alcoy]
          Length = 168

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        +       +     +    SM+      GD L+++ +I+ + G  ++
Sbjct: 58  ADDYIE--GYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLVDRSIEPSDGRIVI 115

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  + G  + L+  N  +    +       I  ++
Sbjct: 116 AAVN-GELTVKRLSKK-GGRVQLLPANPKFQPIDITEGSEMVIWGVV 160


>gi|319408671|emb|CBI82326.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 206

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 35/216 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++    NLT   +A++  +   S +K  +   +   R  + ++I  +      
Sbjct: 6   NIINTLKKILTEFNLTQEDVAKRLNVTQASVSKWLK---DSDPRGSNRDAILALYRELTG 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                                 +PL+ +  +G+         P       V +P      
Sbjct: 63  ESHLTTF---------------VPLMGYIGAGTEIDPSFEQIPEE-GLAQVEIP------ 100

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAK 183
              +A        + +  SM P Y+ GD++I+       I+   G   +I         K
Sbjct: 101 ---FAFPDDMIAFEVRGDSMYPAYKDGDMVIVRRRQIKTIESFIGKEAVILTHDNKRYIK 157

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +       IDL+S N   P   ++   + W+  I 
Sbjct: 158 QISRGMNGEIDLISWNNVSP---IKNVKVTWVGEIF 190


>gi|315187286|gb|EFU21042.1| transcriptional repressor, LexA family [Spirochaeta thermophila DSM
           6578]
          Length = 201

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 56/217 (25%), Gaps = 34/217 (15%)

Query: 6   HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            K++   I R  E H    +   +AR   ++  +         E                
Sbjct: 9   QKEVLSFIQRFRELHGYVPSYREIARHFSVNVRAIYDVLNALKEK--------------- 53

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                          +    +        L    +              +    V VPE 
Sbjct: 54  --GYIRHSPHKSRALEIVEEDPPPVVYLPLVGEVAAGKPL-----LAEEHIEGEVVVPES 106

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             P  G      +    + +  SM      KGD+ I+        G+ ++          
Sbjct: 107 FLPRGG-----GRFFVLRVKGESMEGAGILKGDLAIIREQDWAVDGEIVVALLEEN-ATL 160

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K     +   I L S +  YP      + ++ + +++
Sbjct: 161 KRFFKEK-HRIRLESSHPSYPPIY--TTQVKILGKLV 194


>gi|295095411|emb|CBK84501.1| SOS-response transcriptional repressor, LexA [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 202

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVFDLIRDHIGQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLVEEESGIPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPGMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G ++ L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNTVQLLPENNEFSPIVVDLRE 183


>gi|322421350|ref|YP_004200573.1| LexA family transcriptional repressor [Geobacter sp. M18]
 gi|320127737|gb|ADW15297.1| transcriptional repressor, LexA family [Geobacter sp. M18]
          Length = 211

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 30/214 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT    KK+ + I    ER     +   +A+  G                       ES+
Sbjct: 1   MTP-KQKKVLDFILGFIERQGFQPSQQEIAQGCGF----------------------ESL 37

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +                ++ +   +  +   +     S +      G+   G      
Sbjct: 38  GTVQHYLRVLERGGHLSRNNNAKRGLQLSQRKVVAPAATSPAFELPLVGIVAAGRPVEAF 97

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +         A        + +  SM+ +    GD + ++       G  ++     
Sbjct: 98  QLSDAI-EVPSAMAGPGNVVY-EVRGDSMVEMGIMDGDFVAVHPQSVAENGQTVI-AEVN 154

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           G I  K  + +    I L+  N      TV   D
Sbjct: 155 GSITIKKYVRKENG-IQLLPANSAMSPITVTEDD 187


>gi|298501785|ref|YP_003723725.1| bifunctional S24 family peptidase/transcriptional regulator
           [Streptococcus pneumoniae TCH8431/19A]
 gi|298237380|gb|ADI68511.1| bifunctional S24 family peptidase/transcriptional regulator
           [Streptococcus pneumoniae TCH8431/19A]
          Length = 246

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 63/247 (25%), Gaps = 38/247 (15%)

Query: 3   SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S  +K+I    I R+     L P  LA       T+ N       +   R    E +   
Sbjct: 2   SLGNKQIMADNIKRLLSAKGLNPRQLAIALDFKYTTVNDWVN--AKTYPRIDKIEMLANF 59

Query: 62  LAATNETICQL-----------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
              +   + +              +        + K             +       +  
Sbjct: 60  FNVSKSDLVENKNAETPTTSLIQSIYDQLTPPRQAKALTYLKKQLLEQKNENIVSENIIS 119

Query: 111 TGNKWNTVGVPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRK 153
             +   +  +P I                         I             SM P  + 
Sbjct: 120 LDDYRESKTLPVIGVVTAGNGITQDDNLNIEKCFYTDEIPDDYDAIAYVVGNSMEPKIKN 179

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DI 212
           GD L + +  QV+     + +   G    K L  +      L SLN       ++ S DI
Sbjct: 180 GDYLFIKNTPQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDCADIQLDESNDI 233

Query: 213 EWIARIL 219
             I  ++
Sbjct: 234 RTIGEVV 240


>gi|289673956|ref|ZP_06494846.1| LexA repressor [Pseudomonas syringae pv. syringae FF5]
          Length = 99

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 137 DTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
           D   + Q  SM       GD++ ++   Q + G  ++ +   G++  K L  R  + I L
Sbjct: 11  DYLLRVQGDSMIEDGILDGDLVGVHRNPQASDGQIVVARLD-GEVTIKRLQRRADQ-IRL 68

Query: 196 MSLNCCYPVDTVEMSD 211
           +  N  Y    V    
Sbjct: 69  LPRNPAYEPIIVTPDQ 84


>gi|293372213|ref|ZP_06618600.1| peptidase S24-like protein [Bacteroides ovatus SD CMC 3f]
 gi|292632839|gb|EFF51430.1| peptidase S24-like protein [Bacteroides ovatus SD CMC 3f]
          Length = 223

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 61/214 (28%), Gaps = 19/214 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I +  +   ++   L  +AGL    +         G+ +  S +   KI     + 
Sbjct: 3   IKEKIQKYIDYKGISVYRLEAEAGLSKGYW---------GKTKSISADIAMKISRVYGDM 53

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-----KWNTVGVPEI 123
             + L     +     ++E++   +            + ++           +     E 
Sbjct: 54  STEWLLRDKGEMIKNAEREQKTIEISESAISETKRKGALIYDIDATCGLSGRDIEFTDEK 113

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNCGDRLLIKPRTGDIV 181
                    I            SMLPL   GD +++    +       ++ +       +
Sbjct: 114 VIGSIDAPEINPDSKIIFATGDSMLPLIASGDRVVIRKIESWDYFNYGQVYLIITNEYRL 173

Query: 182 AKVLISRR---GRSIDLMSLNCCYPVDTVEMSDI 212
            K +          I L S N  Y    +   +I
Sbjct: 174 IKRVRRHPKDADNLILLRSENPDYDDIDLPKREI 207


>gi|163787227|ref|ZP_02181674.1| putative UmuD/RumA DNA repair protein [Flavobacteriales bacterium
           ALC-1]
 gi|159877115|gb|EDP71172.1| putative UmuD/RumA DNA repair protein [Flavobacteriales bacterium
           ALC-1]
          Length = 146

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 4/118 (3%)

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPL-YRKGDILILNS 161
           F       G         E R   +       +     +    SM+       D+L+++ 
Sbjct: 24  FFDTGISAGFPSPADDFKEQRLSLDDELVKNKEATFYARVSGQSMIGAGLDDNDLLVIDR 83

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +++       +     G+   K L       + L   N  YP+  +   +   +  I+
Sbjct: 84  SLEPENNKIAVCFLD-GEFTVKRL-RVSEGEVWLQPENPDYPIIKISEENSFVVWGIV 139


>gi|22124486|ref|NP_667909.1| LexA repressor [Yersinia pestis KIM 10]
 gi|45440324|ref|NP_991863.1| LexA repressor [Yersinia pestis biovar Microtus str. 91001]
 gi|51594724|ref|YP_068915.1| LexA repressor [Yersinia pseudotuberculosis IP 32953]
 gi|108809960|ref|YP_653876.1| LexA repressor [Yersinia pestis Antiqua]
 gi|108813515|ref|YP_649282.1| LexA repressor [Yersinia pestis Nepal516]
 gi|145600904|ref|YP_001164980.1| LexA repressor [Yersinia pestis Pestoides F]
 gi|150260639|ref|ZP_01917367.1| LexA repressor [Yersinia pestis CA88-4125]
 gi|153950737|ref|YP_001402724.1| LexA repressor [Yersinia pseudotuberculosis IP 31758]
 gi|162419551|ref|YP_001605833.1| LexA repressor [Yersinia pestis Angola]
 gi|165926677|ref|ZP_02222509.1| LexA repressor [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936375|ref|ZP_02224943.1| LexA repressor [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010401|ref|ZP_02231299.1| LexA repressor [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213964|ref|ZP_02239999.1| LexA repressor [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402457|ref|ZP_02307914.1| LexA repressor [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418922|ref|ZP_02310675.1| LexA repressor [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426198|ref|ZP_02317951.1| LexA repressor [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167467145|ref|ZP_02331849.1| LexA repressor [Yersinia pestis FV-1]
 gi|170026073|ref|YP_001722578.1| LexA repressor [Yersinia pseudotuberculosis YPIII]
 gi|186893727|ref|YP_001870839.1| LexA repressor [Yersinia pseudotuberculosis PB1/+]
 gi|218927520|ref|YP_002345395.1| LexA repressor [Yersinia pestis CO92]
 gi|229836571|ref|ZP_04456737.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
           pestis Pestoides A]
 gi|229840179|ref|ZP_04460338.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229842261|ref|ZP_04462416.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229904001|ref|ZP_04519114.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
           pestis Nepal516]
 gi|270489014|ref|ZP_06206088.1| repressor LexA [Yersinia pestis KIM D27]
 gi|294502381|ref|YP_003566443.1| LexA repressor [Yersinia pestis Z176003]
 gi|25453097|sp|Q8ZJ16|LEXA_YERPE RecName: Full=LexA repressor
 gi|71658818|sp|Q66FG7|LEXA_YERPS RecName: Full=LexA repressor
 gi|123072492|sp|Q1C0U1|LEXA_YERPA RecName: Full=LexA repressor
 gi|123246202|sp|Q1CE98|LEXA_YERPN RecName: Full=LexA repressor
 gi|166224657|sp|A4TRU5|LEXA_YERPP RecName: Full=LexA repressor
 gi|166990804|sp|A7FN96|LEXA_YERP3 RecName: Full=LexA repressor
 gi|229470193|sp|B2K1U7|LEXA_YERPB RecName: Full=LexA repressor
 gi|229470194|sp|A9R273|LEXA_YERPG RecName: Full=LexA repressor
 gi|229470195|sp|B1JNE3|LEXA_YERPY RecName: Full=LexA repressor
 gi|21957278|gb|AAM84160.1|AE013659_4 regulator for SOS(lexA) regulon [Yersinia pestis KIM 10]
 gi|45435180|gb|AAS60740.1| LexA repressor [Yersinia pestis biovar Microtus str. 91001]
 gi|51588006|emb|CAH19610.1| LexA repressor [Yersinia pseudotuberculosis IP 32953]
 gi|108777163|gb|ABG19682.1| SOS-response transcriptional repressor, LexA [Yersinia pestis
           Nepal516]
 gi|108781873|gb|ABG15931.1| SOS-response transcriptional repressor, LexA [Yersinia pestis
           Antiqua]
 gi|115346131|emb|CAL18999.1| LexA repressor [Yersinia pestis CO92]
 gi|145212600|gb|ABP42007.1| SOS-response transcriptional repressor, LexA [Yersinia pestis
           Pestoides F]
 gi|149290047|gb|EDM40124.1| LexA repressor [Yersinia pestis CA88-4125]
 gi|152962232|gb|ABS49693.1| LexA repressor [Yersinia pseudotuberculosis IP 31758]
 gi|162352366|gb|ABX86314.1| LexA repressor [Yersinia pestis Angola]
 gi|165915491|gb|EDR34100.1| LexA repressor [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921300|gb|EDR38524.1| LexA repressor [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990491|gb|EDR42792.1| LexA repressor [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204939|gb|EDR49419.1| LexA repressor [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962916|gb|EDR58937.1| LexA repressor [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048145|gb|EDR59553.1| LexA repressor [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054909|gb|EDR64711.1| LexA repressor [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169752607|gb|ACA70125.1| transcriptional repressor, LexA family [Yersinia pseudotuberculosis
           YPIII]
 gi|186696753|gb|ACC87382.1| transcriptional repressor, LexA family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679771|gb|EEO75874.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
           pestis Nepal516]
 gi|229690571|gb|EEO82625.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696545|gb|EEO86592.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229706255|gb|EEO92263.1| DNA-binding transcriptional repressor of SOS regulon [Yersinia
           pestis Pestoides A]
 gi|262360464|gb|ACY57185.1| LexA repressor [Yersinia pestis D106004]
 gi|262364410|gb|ACY60967.1| LexA repressor [Yersinia pestis D182038]
 gi|270337518|gb|EFA48295.1| repressor LexA [Yersinia pestis KIM D27]
 gi|294352840|gb|ADE63181.1| LexA repressor [Yersinia pestis Z176003]
          Length = 202

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ +     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEEGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSLFKPGADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNIVHLLPENSEFQPIVVDLRE 183


>gi|332995784|gb|AEF05839.1| LexA repressor [Alteromonas sp. SN2]
          Length = 208

 Score = 72.5 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 32/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    ++ E I        + P  + +AR  G                R+   + E
Sbjct: 1   MRPLTARQTEVLELIKTTMLETGMPPTRAEIARHLGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                     T +  K    L        G    G    G    
Sbjct: 46  HLKALARK----------GVIEILPGTSRGIKLNIPLEDETPEEEGLPLIGRVAAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V+ G  ++ + 
Sbjct: 96  AQEHIESHYKVDPALFQPHADFLLRVSGMSMKDIGILDGDLLAVHRTTDVHNGQVVVARV 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  R GR + L + N  +    V+++
Sbjct: 156 D-EDVTVKRLEKR-GREVLLHAENDEFSPIKVDLA 188


>gi|251810407|ref|ZP_04824880.1| phage repressor protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|251806011|gb|EES58668.1| phage repressor protein [Staphylococcus epidermidis BCM-HMP0060]
          Length = 240

 Score = 72.5 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 82/238 (34%), Gaps = 28/238 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARK------AGLDPTSFNKSKRFGIEGRNRWPST 55
                    + I ++ ++  LT   L+ +      A     SF K K    E     P  
Sbjct: 12  KELKQMTFGDRIRKLRKQKGLTLQQLSDELHEQFPAKDKKNSFTKGKLSNWENDKSEPIA 71

Query: 56  ESIFKILAATNETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +++ ++      ++  L+ L        T  +  ++P      +G+              
Sbjct: 72  KTVSQLATYFGVSMDYLIGLEDDIVPLETVHQYYQVPFYGKVSAGNFEMVADETK----- 126

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGD 169
                VP+            ++    +    SM  +   G  +I++        ++N  D
Sbjct: 127 --EFDVPDKAFNGRK----PSECIALQVNGDSMNKILANGSYIIVHDYRKNQDYKLNSND 180

Query: 170 RLLIKPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEM---SDIEWIARILWASQ 223
            L+++   G+   K +     +  +D +S +  +  ++ ++    +IE I ++++  Q
Sbjct: 181 ILVLR-LGGEYTVKRVRRTETKLHLDPVSYSDEFKTNSYDLDSIDEIEVIGKVIYNYQ 237


>gi|21910513|ref|NP_664781.1| putative repressor protein - phage associated [Streptococcus
           pyogenes MGAS315]
 gi|28876261|ref|NP_795430.1| putative repressor protein [Streptococcus pyogenes phage 315.2]
 gi|21904712|gb|AAM79584.1| putative repressor protein - phage-associated [Streptococcus
           pyogenes phage 315.2]
          Length = 262

 Score = 72.5 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 67/245 (27%), Gaps = 39/245 (15%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I   I+ +   +NL    LA    +  +SFN+  +         P+  ++ KI     
Sbjct: 17  KIISAKINSLLLENNLKQGHLADALEIPRSSFNEYVKGNS-----LPNPGNVQKIADYFG 71

Query: 67  ETICQLLDLPFSDGRTTEKK-------------------EKEIPLLYFPPSGSGGFFDSG 107
                +        +  E K                    ++  +L F         +  
Sbjct: 72  LMKSDIDPRFAPRKKNHELKIPTSPLVKKITTTVVELKVPRKQKVLDFATEQLKEQKNKI 131

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGD 155
                  +      ++ +     Y                 D        SM P Y  G+
Sbjct: 132 TSIEKKLYEYKVYEKLSAGTGYGYFGDGNYDTVFYDEELDYDFASWVFGDSMEPTYLNGE 191

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EW 214
           ++++        G         G    K +   +G  + L+SLN  Y       S+    
Sbjct: 192 VVLIKQTGFDYEGGI-YAVEWDGQTYIKKVYREKGG-LRLVSLNKKYNDKFAPFSEGPRV 249

Query: 215 IARIL 219
           I  I+
Sbjct: 250 IGEIV 254


>gi|146743438|gb|ABQ43165.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Ca]
          Length = 350

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIHDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKGLEKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|146743442|gb|ABQ43168.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Cb]
          Length = 349

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIHDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVKGLEKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|91210491|ref|YP_540477.1| putative prophage CP-933O repressor protein [Escherichia coli
           UTI89]
 gi|117623476|ref|YP_852389.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli APEC O1]
 gi|218558195|ref|YP_002391108.1| repressor protein from phage origin [Escherichia coli S88]
 gi|237705232|ref|ZP_04535713.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91072065|gb|ABE06946.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli UTI89]
 gi|115512600|gb|ABJ00675.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli APEC O1]
 gi|218364964|emb|CAR02661.1| putative repressor protein from phage origin [Escherichia coli S88]
 gi|226899989|gb|EEH86248.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294491136|gb|ADE89892.1| peptidase, S24 (LexA) family [Escherichia coli IHE3034]
 gi|307627215|gb|ADN71519.1| putative repressor protein from phage origin [Escherichia coli
           UM146]
 gi|315288641|gb|EFU48039.1| peptidase S24-like domain protein [Escherichia coli MS 110-3]
          Length = 212

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 62/208 (29%), Gaps = 21/208 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT- 65
           + I E I +     NL    L    G    S ++    G    +R+ S  S+ KIL    
Sbjct: 4   QTISERITQRMHALNLKGKDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILKVNE 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           N  +             +    K +PLL    + S               + +    I S
Sbjct: 62  NWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSSITS 108

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
               +  I         +  SM           G  + ++    V  G+ +L  P+    
Sbjct: 109 CVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKGTTT 168

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                +   G  I L+  N  YP   ++
Sbjct: 169 PVIRKLEIEGPDILLVPTNPRYPSIMLD 196


>gi|313891813|ref|ZP_07825418.1| repressor LexA [Dialister microaerophilus UPII 345-E]
 gi|313119807|gb|EFR42994.1| repressor LexA [Dialister microaerophilus UPII 345-E]
          Length = 224

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 57/230 (24%), Gaps = 29/230 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGL-------ARKAGL--DPTSFNKSKRF-GIEGRN 50
           M   S K   E +  +          +       A+K G+  + +  ++        G++
Sbjct: 1   MKKRSTK---ERLKELMTARRYRQVDIIELCKPYAKKYGVKINKSDISQYVSGKVSPGQD 57

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           +     S   +  A        ++         + K          P          ++ 
Sbjct: 58  KLFVLGSALNVDEAWLMGYDVPMERKTRTTEPLQAKNIIPIQKKKIPLLGTIAAGQPIYA 117

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
             +    + + +              D   K    SM+      GDI+ +     V  G 
Sbjct: 118 EEHIEEYLPIDDDLHA----------DFALKVSGDSMINADINDGDIVFIKKQEIVENGQ 167

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIA 216
              +         K      G  + L + N  Y     +     +   I 
Sbjct: 168 IAAVLID-DSATLKRFYKI-GSIVQLQAENPKYSPIICDESNCDNCRIIG 215


>gi|298485973|ref|ZP_07004047.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159450|gb|EFI00497.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 238

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 15/208 (7%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT--- 83
           ++   G+   +  +       G  +     S+ + L  T + +      P          
Sbjct: 27  ISNTCGVSYEAVRQWFAGDT-GNIKNEHLLSLARSLDTTVDWLLDGAGEPPQRRAAGNVA 85

Query: 84  ---EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI----YAIQTQ 136
                + +    +  P     G    G         TV    +R+ +       Y     
Sbjct: 86  QGDFTRHQRDDEIDIPQYDVVGSMGPGQVLPKEYIETVRNITVRTEYLREQGITYTHDKN 145

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
            +       SM   +  GD LI++  I     D + +    G +  K L     + + ++
Sbjct: 146 LSVITGFGESMGATFASGDPLIVDQGINEVVVDGVYVFTLDGMLYIKRLQRLP-KMLRML 204

Query: 197 SLNCCYPVDTVEMSD---IEWIARILWA 221
           S N  +P   ++  +   I   AR+L A
Sbjct: 205 SDNETFPPYDIKGDELNSIVIHARVLLA 232


>gi|295135526|ref|YP_003586202.1| HTH_3 family transcriptional regulator protein [Zunongwangia
           profunda SM-A87]
 gi|294983541|gb|ADF54006.1| HTH_3 family transcriptional regulator protein [Zunongwangia
           profunda SM-A87]
          Length = 262

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 15/214 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
             + E +N T +  A   G+  ++    +R   +      S + + ++L         L 
Sbjct: 12  KEVREENNFTQAEFAEILGIKNST-ADIERGRTK-----LSGKVVSELLRQFGINPLWLF 65

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                      K +    ++    +                +               + I
Sbjct: 66  GDSGQKYLKISKGDVSPKVVTVDRNTDNENIVMVNQKAAAGYPHNVQDVEWYTQLPAFEI 125

Query: 134 Q------TQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKVL 185
                        + +  SMLP YR G+ ++    + ++    +R+ +      ++ K +
Sbjct: 126 PLPEFRNASYRGFQVEGDSMLPNYRPGEWVMAKGIAGMEEVNNNRVYVVVMYDSVLIKKI 185

Query: 186 ISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                   + L+SLN  Y    V++ DI+ + ++
Sbjct: 186 QRLPDPSKLLLISLNEEYLPIEVKLGDIQELWQV 219


>gi|303324865|pdb|3JSO|A Chain A, Classic Protein With A New Twist: Crystal Structure Of A
           Lexa Repressor Dna Complex
 gi|303324866|pdb|3JSO|B Chain B, Classic Protein With A New Twist: Crystal Structure Of A
           Lexa Repressor Dna Complex
 gi|303324869|pdb|3JSP|A Chain A, Classic Protein With A New Twist: Crystal Structure Of A
           Lexa Repressor Dna Complex
 gi|303324870|pdb|3JSP|B Chain B, Classic Protein With A New Twist: Crystal Structure Of A
           Lexa Repressor Dna Complex
 gi|303324897|pdb|3K3R|E Chain E, Unrefined Crystal Structure Of A Lexa-Dna Complex
 gi|303324898|pdb|3K3R|F Chain F, Unrefined Crystal Structure Of A Lexa-Dna Complex
          Length = 202

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++    L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DEVTVARLKKQ-GNKVELLPENSEFKPIVVDLRQ 183


>gi|328952600|ref|YP_004369934.1| putative phage repressor [Desulfobacca acetoxidans DSM 11109]
 gi|328452924|gb|AEB08753.1| putative phage repressor [Desulfobacca acetoxidans DSM 11109]
          Length = 258

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 2   TSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
             FS +     + ++     +          G+   + ++ K          PS +S+  
Sbjct: 4   KMFSKEIFLRQVKKLMAEKGIKDQKVFNDMVGV-QRAISRWKSGESR-----PSVDSLMV 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW----- 115
           I     ++I  LL           +    +                   P          
Sbjct: 58  IQEIFGKSIDWLLTGEEPPAFRPVQPIISLAGTEPEVPEGLRPEYYLAVPMVEGRIAAGY 117

Query: 116 ------NTVGVPEIRSPHNGIYAIQTQDTRHKT--QDTSMLPLYRKGDILILNSAIQVNC 167
                 + V                      +      SM P   +G I+I++       
Sbjct: 118 AGAIPGDYVEDLVWVYKPEIGARQHHNLRAVRLRHDSESMEPTIHRGSIVIIDPTEIQIT 177

Query: 168 GDRL--LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWA 221
              +  +     G    K +  +      L+S N  Y    +E + I    I R++W+
Sbjct: 178 PKAIFAVRLDSEGGCALKRVQ-QTKDLWVLVSDNPEYDPIAIEKARIPTIIIGRVIWS 234


>gi|327473020|gb|EGF18447.1| hypothetical transcriptional regulator [Streptococcus sanguinis
           SK408]
          Length = 227

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 53/217 (24%), Gaps = 14/217 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +     +  L    +  K  +   +++  ++   + +    + + +  IL        +L
Sbjct: 7   LKNRRLKLGLRQVDIIEKLNVSKQAYSAWEKG--KIKPSQDNLKKLETILKVPEGYFTEL 64

Query: 73  LDLPFSDGRTTEKKEKEIPLL---------YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                        ++K    +                  +                  ++
Sbjct: 65  EIATLYKKLNKPNQQKAKIYVEDLLETQKSKVQSIKKERYEYHVYEKMSAGIGASIYGDV 124

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                        D        SM P Y+ G + ++        G  +           K
Sbjct: 125 NYDTVYFDEEFAHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNSQTYIK 183

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
            +       + L+S+N  Y    +    D   +  I+
Sbjct: 184 RVFREEDG-LRLVSINQKYKDIFIPYEDDPRVVGVIV 219


>gi|303246849|ref|ZP_07333126.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
 gi|302491866|gb|EFL51746.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
          Length = 274

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 71/251 (28%), Gaps = 43/251 (17%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNK-----------------------SKRFGI 46
           W+A+  +A   N   +GLA   G+     +K                        +    
Sbjct: 21  WKALVDLAAMENANQAGLAAFVGVSQGYVSKILSGKQMPKHGLRRRFAAFFELSYEEMLA 80

Query: 47  EGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE---KKEKEIPLLYFPPSGSGGF 103
            GR R  +   + +   +    + +      + GR             +L    +     
Sbjct: 81  LGRERLENQAYLPEGEGSRRYHVREPQYGGEATGRPASTGADNAALKSMLRDIRAREMHQ 140

Query: 104 FDSGVFP------------TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
                 P            T     T+     R+            T  +    SM P  
Sbjct: 141 VYYTEVPLREATGSMGGGSTETGDRTLTYLSFRTEWIRSKGNPEYMTVIRAFGDSMDPTI 200

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EM 209
             G +++++   +    +++      G +  K L+ R    + + S N   P   +  + 
Sbjct: 201 TDGSVVLIDEGRRQFVKNKVYYLRYNGQMYIKRLVERE-GHLAIASDND--PNVLLVSDA 257

Query: 210 SDIEWIARILW 220
            D E I R +W
Sbjct: 258 DDFEIIGRCIW 268


>gi|253999192|ref|YP_003051255.1| peptidase S24 and S26 domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253985871|gb|ACT50728.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4]
          Length = 153

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                +  +               SM+     +G  L+++ +I+      ++     G++
Sbjct: 49  AELDLNKRLVRNPPATFFFTVSGDSMIGAGIFEGSTLVVDRSIKAKSTSIVV-AMVEGEL 107

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + K L  R    + L+S N  Y   T+       I  ++
Sbjct: 108 MVKRLYKRGA-VVKLLSDNPAYAPITLTEGQELIIWGVV 145


>gi|260174776|ref|ZP_05761188.1| putative phage repressor [Bacteroides sp. D2]
 gi|315923030|ref|ZP_07919270.1| predicted protein [Bacteroides sp. D2]
 gi|313696905|gb|EFS33740.1| predicted protein [Bacteroides sp. D2]
          Length = 215

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 18/221 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + ++  E +        +  +     +GL   + ++             S  SI KI 
Sbjct: 1   MTTKERFIEYLKI----KGIGQTSFEESSGLSRGAISQ---------KSGFSANSIEKIA 47

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGV 120
            A  +     L     +   +                            G+    +    
Sbjct: 48  IACPDLNLDWLITGNGEILKSSHTNIIAKAPMEYGKEQTRPRVPLTAAAGSLSGDSIGVT 107

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNCGDRLLIKPRTG 178
            E       I+ I + D     +  SM P +  GD +        +     ++ +   T 
Sbjct: 108 LEQCEQMPLIHQIPSYDFTMFIKGDSMSPRFESGDEIACRHIDQSRFIQWGKVHVLDTTQ 167

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             V K +    G  I  +S N  Y   +V   DI  ++ ++
Sbjct: 168 GFVIKRVYED-GDKIRCVSYNPEYSDFSVPKEDILSMSLVV 207


>gi|299771254|ref|YP_003733280.1| putative repressor protein from bacteriophage [Acinetobacter sp.
           DR1]
 gi|298701342|gb|ADI91907.1| putative repressor protein from bacteriophage [Acinetobacter sp.
           DR1]
          Length = 262

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 55/256 (21%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M+     H+       ++ +   LT S  A K  +     ++      +   +    E+ 
Sbjct: 1   MSELKTIHEIRLGNTRKLMKESGLTRSEFAEKIDMSYGLVSQY---IGKNPTKNIGDETA 57

Query: 59  FKILAATN---------------------------------------ETICQLLDLPFSD 79
            KI  A N                                             +      
Sbjct: 58  LKIEEAFNKPRGYLDQSDIQNENAHQLDGTASFKQLDIEAFKKKYNIPDSEDAVLFSNVI 117

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
            +     ++ +P+  +   G  G+F    +        V                     
Sbjct: 118 EKPLVISKRWVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPTHTAGDR----------SYA 167

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
            K    SM P  R G  ++ +   ++   + + +  + G    K  I      ++L+++N
Sbjct: 168 IKGTGDSMYPAIRNGWYVVCDPDAELTPTEFVQVCLKDGRCTIKEFIGIHNNVLNLLAVN 227

Query: 200 CCYPVDTVEMSDIEWI 215
                 T +M ++E I
Sbjct: 228 GG-ERLTFDMDEVESI 242


>gi|163800585|ref|ZP_02194486.1| putative phage repressor [Vibrio sp. AND4]
 gi|159176028|gb|EDP60822.1| putative phage repressor [Vibrio sp. AND4]
          Length = 220

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 52/205 (25%), Gaps = 11/205 (5%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRN---RWPSTESIFKILAATNETICQLLDLPFSD 79
               LA+  G +    +K  R   +      + P+TE   K+     +   +       D
Sbjct: 11  NARALAKAIGGNAAFSDKIDRSTTQVSRFMGKRPTTEIGPKMARHIEQCFEKPEGWLDVD 70

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
              T   +                 +      G+      + +          I      
Sbjct: 71  REKTPSSDISSVSYTTRTKQVPILSEVQAGTWGSVDTRAALDDDIEWQITSSNISDDAFA 130

Query: 140 HKTQDTSM-----LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193
            +    SM      P    G I+++      + G  ++           K L     +  
Sbjct: 131 MRVTGNSMTNPHGSPSIPAGSIVVVEPCNCPDNGKIVVATLNDAPQATIKKLEIDGPQKF 190

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARI 218
            L+ LN  Y    +  +    +  +
Sbjct: 191 -LVPLNPKYDPIPINGN-CRIVGYV 213


>gi|281357484|ref|ZP_06243972.1| Peptidase S24/S26A/S26B [Victivallis vadensis ATCC BAA-548]
 gi|281316087|gb|EFB00113.1| Peptidase S24/S26A/S26B [Victivallis vadensis ATCC BAA-548]
          Length = 312

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 16/224 (7%)

Query: 8   KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESIFKILAA 64
           ++ E I     R  + + + L R  G    S +  +R    G+  W      ++ + L  
Sbjct: 87  ELRECIKDAMLREGVASAADLNRLIG--YDSVHTLERLLS-GKLNWFPDILSAVAEALGI 143

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV--PE 122
            ++++                 +  + +   P                          PE
Sbjct: 144 DHDSLPISPAERMQLLPAGYFGDGAMLVRPIPVVSWANAAGHLDLLANPDTRLFSRWDPE 203

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA---IQVNCGDRLLIKPRTG- 178
                      +      +    SM P     DI+++       +V     ++ +   G 
Sbjct: 204 NTETVPAPVGTRKGTQAFRVTGISMEPTIMDDDIILVEQRMSLDEVPNNKIVVARLTEGK 263

Query: 179 ---DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +V K L  + G    L S N    V  VE SD++W+  ++
Sbjct: 264 FEDCVVCKRLRRQ-GGHCWLTSDNPAGMVIPVEPSDLQWLGIVV 306


>gi|289678686|ref|ZP_06499576.1| LexA repressor [Pseudomonas syringae pv. syringae FF5]
          Length = 107

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E     N  +   + +   +    SM  +    GD+L +++  +   G  ++ +    +
Sbjct: 3   IEESCNINPSFFHPSANYLLRVHGMSMKDVGILDGDLLAVHTTREARNGQIVVARI-GDE 61

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           +  K      G  + L++ N  +    V++ D
Sbjct: 62  VTVKRFKR-EGSKVWLLAENPDFAPIEVDLKD 92


>gi|52841932|ref|YP_095731.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629043|gb|AAU27784.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 184

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +    +   +  +          +    SM+      GDILI++  I+   G  ++
Sbjct: 74  GDDYIE--SMLDLNEYLIKHPASTFFVRASGESMINAGIYSGDILIVDRGIEATHGKIVI 131

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +    G++  K L  + G+ + L++ N  +P   +       I  ++
Sbjct: 132 VALN-GELTVKRLSRQHGQ-VKLLAENPDFPPIDITEEYDMVIWGVV 176


>gi|304443270|ref|YP_003857100.1| phage repressor protein [Staphylococcus phage SAP-26]
 gi|302749878|gb|ADL66963.1| phage repressor protein [Staphylococcus phage SAP-26]
          Length = 212

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 26/216 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  +   + L+   +ARK  +   +    +    E     P    + KI +  N +   L
Sbjct: 7   IKEIRLNNRLSKVEMARKLDVSEGTIRMWESGRTE-----PRMGMVEKISSLFNVSKGYL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L             E E+P      +G+                 + VP           
Sbjct: 62  LGEIEEIVLPEFDSEIEVPYFGKVSAGNFEEVAIEN-------EKLKVPPFAFNGRK--- 111

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             ++    K    SM  +   G  +I++        ++N  D L+++   G+   K +  
Sbjct: 112 -PSECIALKINGDSMNKILANGSYIIVHDYRKSCDHKLNSNDILVLR-LGGEYTVKRVRR 169

Query: 188 RRGR-SIDLMSLNCCYPVDTVEM---SDIEWIARIL 219
              +  +D +S +  +  ++ ++    +IE I +++
Sbjct: 170 TETKLHLDPVSYSDEFKTNSYDLDSIDEIEVIGKVI 205


>gi|159903846|ref|YP_001551190.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9211]
 gi|159889022|gb|ABX09236.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9211]
          Length = 202

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 8/125 (6%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
           G    G    G    T    +     N +   +           SM+      GD++++ 
Sbjct: 77  GVPVLGAVAAGGLVETFDDVQETLDLNTVLQTKG-IFALTVNGDSMIDSYIADGDMVLME 135

Query: 161 SAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
                     G  +           K    +    + L + N  Y    ++   ++   +
Sbjct: 136 PVNDPSALRNGTVVSAMVPGSGTTLKHFFRKGP-LVRLEAANPAYEPIEIDADQVQIQGK 194

Query: 218 I--LW 220
           +  +W
Sbjct: 195 LLAVW 199


>gi|304398841|ref|ZP_07380711.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304353545|gb|EFM17922.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 210

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 70/219 (31%), Gaps = 20/219 (9%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             ++ + + I    +   LT   LA++  +   + ++ ++         P  E++ ++  
Sbjct: 1   MKNETLGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEET-----LPRGENLLRLAE 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A                     +     L   P              +  +   +     
Sbjct: 56  ALGCAP----AFLIDGDGPVFSESAYGGLHQIPLLNQRDVTRWLTDDSSVRHELL----- 106

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
               +   A+  Q    + ++ +M+P   + D++I++  +    GD +L   +   ++  
Sbjct: 107 ---MHNDMALSQQSFAFRVEEQAMMPAIVRDDVVIIDPQVSPQPGDSVLALQQQIALIRT 163

Query: 184 VLISRRGRSI---DLMSLNCCYPVDTVEMSDIEWIARIL 219
                    +   +L  +N  +P       +++ I  ++
Sbjct: 164 WRQRSSEGGVTQFELAPININFPELHSSRENLKLIGTVV 202


>gi|33866116|ref|NP_897675.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           WH 8102]
 gi|33639091|emb|CAE08097.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           WH 8102]
          Length = 234

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 50/198 (25%), Gaps = 21/198 (10%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEK 85
           LA   G    S +  ++       R P+  +S  + L        Q              
Sbjct: 47  LAEYIGTHRHSPS-IRQMMQAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQLLGDMA 105

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
               IP+L    +G             +    + +  +                      
Sbjct: 106 AAAGIPVLGAVAAGGLVTAFD------DVQEHLDLAPVLETRG--------LFALTVNGD 151

Query: 146 SMLPL-YRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
           SM+      GD++++           G  +           K    +   ++ L + N  
Sbjct: 152 SMVDAHIADGDVVLMEPVPDPQRLRNGTVVSALVAGSGTTLKHFHRKGA-AVVLEAANPA 210

Query: 202 YPVDTVEMSDIEWIARIL 219
           Y    +    +E   R++
Sbjct: 211 YDPIELPAEQVEVQGRLV 228


>gi|17232400|ref|NP_488948.1| SOS function regulatory protein, LexA repressor [Nostoc sp. PCC
           7120]
 gi|17134046|dbj|BAB76607.1| SOS function regulatory protein, LexA repressor [Nostoc sp. PCC
           7120]
          Length = 201

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 45/190 (23%), Gaps = 8/190 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                +     I      PS   + + +   +    Q            E  E +   + 
Sbjct: 8   QQELYEWLAEYIRIHQHSPSIRQMMQAMNLKSPAPIQSRLEHLRTKGYIEWTEGKARTIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSM-LPLYR 152
                  G    G    G         +     +   + +  Q    +    SM   L  
Sbjct: 68  VLQPIKQGVPVLGAIAAGGLIE--PFTDAVEHIDFSNFVLPAQTYALRVTGDSMIEDLIT 125

Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            GD++ L    +      G  +  +        K      G  I L   N  Y    V  
Sbjct: 126 DGDLVFLRPVPEPDQLKNGTIVAARVDGYGNTLKRFYR-SGDRITLKPANPKYNPIEVAA 184

Query: 210 SDIEWIARIL 219
             +E    ++
Sbjct: 185 IQVEVQGSLV 194


>gi|54294587|ref|YP_127002.1| hypothetical protein lpl1663 [Legionella pneumophila str. Lens]
 gi|54297618|ref|YP_123987.1| hypothetical protein lpp1669 [Legionella pneumophila str. Paris]
 gi|53751403|emb|CAH12821.1| hypothetical protein lpp1669 [Legionella pneumophila str. Paris]
 gi|53754419|emb|CAH15903.1| hypothetical protein lpl1663 [Legionella pneumophila str. Lens]
          Length = 138

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +    +   +  +          +    SM+      GDILI++  I+   G  ++
Sbjct: 28  GDDYIE--SMLDLNEYLIKHPASTFFVRASGESMINAGIYSGDILIVDRGIEATHGKIVI 85

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +    G++  K L  + G+ + L++ N  +P   +       I  ++
Sbjct: 86  VALN-GELTVKRLSRQHGQ-VKLLAENPDFPPIDITEEYDMVIWGVV 130


>gi|283852604|ref|ZP_06369871.1| putative phage repressor [Desulfovibrio sp. FW1012B]
 gi|283572052|gb|EFC20045.1| putative phage repressor [Desulfovibrio sp. FW1012B]
          Length = 241

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 33/237 (13%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA------ATN 66
           I  + +R+    S L R  G+  ++ N+  +         P  + + KIL          
Sbjct: 7   IQALLDRYRGNQSELVRLTGVPQSTLNRLFKGTG-----SPKADILAKILDAVGAKLVLP 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125
               +                   PL       +           G    + +    +  
Sbjct: 62  GERPETTRDVCWVDAKIVSAGDGQPLPPSENYFAVPLVGEAGAGPGVMSDDVIKSWVLVY 121

Query: 126 PHNGIYAIQTQDTRHKT--QDTSMLPLYRKGDILILNSA--IQVNCGDR--LLIKPRTGD 179
            H     +++     +     TSM PL   GDI++ +         G    +    + G 
Sbjct: 122 RHQHAVRLKSNLLAVEIGQGSTSMEPLLHPGDIVLCDRDDFKPTKPGGIFLVREPGQHGG 181

Query: 180 IVAKVLISRRGRSIDLMSL------NCCYPVDTVEM-----SDI--EWIARILWASQ 223
              K +  +      L++       N   P +T  +      +I    I R +WA Q
Sbjct: 182 AKIKRVSIKPVDHDLLITFYSQDTVNS--PPETFSLRGDYNDNITEAIIGRCVWAWQ 236


>gi|258545393|ref|ZP_05705627.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826]
 gi|258519362|gb|EEV88221.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826]
          Length = 284

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 63/276 (22%), Gaps = 71/276 (25%)

Query: 14  DRMAERHNL----TPSGLARKAGLDPTSFNKSKRFGIEG--------------------- 48
            R+ E+  L    +   L    G+  T+  + ++                          
Sbjct: 5   KRLLEQRKLAGYSSQEQLGDALGVSFTTIARWEKDQSPIPSDKLVGMNALGLDAVYILTG 64

Query: 49  ---------RNRWPSTESIF--------------------KILAATNETICQLLDLPFSD 79
                    + R      I                     ++   T        ++    
Sbjct: 65  KTGDVAGFQKPRSRKNNEIAESQNTKPATSPVLGDEIVADQMADGTWRVRSSSGEILRGT 124

Query: 80  GRTTEKKEKEIPLLY--------FPPSGSGGFFDSGVFPTGNKW----NTV--GVPEIRS 125
                +  +E    Y             +           G         V   +   + 
Sbjct: 125 TDEVIRHLRERAAPYEAGRDRTPDVNDYAWIPLYDVEVSAGGGRFFDGENVLTYLAFTKY 184

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                          +    SM P  +  D ++++           + +     +  K L
Sbjct: 185 SLRKQGLQPDMLACVRVSGDSMEPTIQSNDAVMIDMRQTTADSGIFVFRH-GEVLYLKRL 243

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220
           +      + ++S N  YP   ++   DI+ I + +W
Sbjct: 244 MREGAG-VRVISDNEIYPSWLIQPGEDIQIIGKRVW 278


>gi|294789597|ref|ZP_06754832.1| putative prophage repressor protein [Simonsiella muelleri ATCC
           29453]
 gi|294482534|gb|EFG30226.1| putative prophage repressor protein [Simonsiella muelleri ATCC
           29453]
          Length = 243

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 16/219 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           F+ K+I+           L    LA K G+  +  N              + +   +   
Sbjct: 37  FTLKEIFNRKKA---ELELKQELLAEKLGISQSGLNHYLNGTN-----LLNAQIASQFAR 88

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               ++    +    + R   K              + G   +  + TG           
Sbjct: 89  ELRISVDDFSERLAEEIRQMAKMVNNKNSSVSIQGSNHG---TQNYFTGQSQTNTVNNNF 145

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                   +++         D +MLP + +G  L ++++       ++           +
Sbjct: 146 LPSEPHSGSLKK----IVMPDNAMLPTFPQGSELTIDTSQTAIIDGKIYEIQSGERFFIR 201

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-WA 221
            + S+   S+ ++  N  +    V   +++ + R++ W+
Sbjct: 202 KIFSQISGSLKIVCDNPEFESAIVSSENVQIVGRVIRWS 240


>gi|288575295|ref|ZP_05976691.2| putative phage repressor [Neisseria mucosa ATCC 25996]
 gi|288568389|gb|EFC89949.1| putative phage repressor [Neisseria mucosa ATCC 25996]
          Length = 239

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 19/214 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I +  ++ N+T   LA +   D  + ++ +        +    + I     A   
Sbjct: 27  EIGKIIRQRRKQLNMTQEELALEVNSDAGNLSRVENG-----KQGIPLDKIELYAKALRC 81

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               LL                   +    +     +D     TG    +  +       
Sbjct: 82  RPADLLVEETQVSEPPLPLG--FIRIPLLDAIQAFNWDKLKSHTGELDISDWLISSAD-- 137

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                I T     K  D SM+P +++G+++I++  +    GD +L+     D++ +    
Sbjct: 138 -----ISTDSFGFKIMDFSMMPEFKQGELVIIDPELTPEAGDIVLVATVNRDVLLRKYKQ 192

Query: 188 RR---GRSI--DLMSLNCCYPVDTVEMSDIEWIA 216
           R      S   +L  LN  + + +   S+++ + 
Sbjct: 193 RGISDDGSFIYELHPLNDDFEILSSTSSELKILG 226


>gi|123968457|ref|YP_001009315.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           AS9601]
 gi|123198567|gb|ABM70208.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           AS9601]
          Length = 138

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +     E    +  + +        + +  SM+    +  D++I++ ++    G+ ++
Sbjct: 28  ADDYTE--ENIDLNEHLISNPFSTFFLRVKGDSMINAGIKDKDLIIVDKSLTARPGNIII 85

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
                G+   K L  +    + L + N  YP    +   D++    ++
Sbjct: 86  AMID-GEFTIKRLSIK-NNELYLKAENHNYPDFRFKNHIDVQIWGVVI 131


>gi|325283869|ref|YP_004256410.1| LexA repressor [Deinococcus proteolyticus MRP]
 gi|324315678|gb|ADY26793.1| LexA repressor [Deinococcus proteolyticus MRP]
          Length = 221

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 56/224 (25%), Gaps = 34/224 (15%)

Query: 1   MTSFSHK----KIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           M+   H     +I E +  +   H  +T   L     L   +  +      +        
Sbjct: 1   MSPLDHAPRQREILEQVAALEAAHQPVTTQSLTHALSLPRQNVRQYLLALRDK------- 53

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                        +             T  +E      +  P          +   G   
Sbjct: 54  ------------GLIHYEASDRQRALITLTEEGRKLTEHSYPVLGTVAAGHPILAEGEIQ 101

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI-QVNCGDRL-L 172
             V      +    +  ++  D        SM+      GD++ +  +  +   G+ + +
Sbjct: 102 RYV------TRLEDVLDLKPGDFLLPVSGDSMIGAGIFDGDLVAIRPSQAEPLRGEIVLV 155

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           + P       K         + L S N  Y    V  + +E   
Sbjct: 156 LLPDVSTATLKRWNRL-NGVVSLHSENPAYAPIVVPATSVEIQG 198


>gi|260767588|ref|ZP_05876524.1| SOS-response repressor and protease LexA [Vibrio furnissii CIP
           102972]
 gi|260617488|gb|EEX42671.1| SOS-response repressor and protease LexA [Vibrio furnissii CIP
           102972]
 gi|315178782|gb|ADT85696.1| LexA repressor [Vibrio furnissii NCTC 11218]
          Length = 208

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 62/214 (28%), Gaps = 32/214 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIRSKIDETGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  + +       +   G    G    G    
Sbjct: 46  HLKALARK----------QVIEIVPGASRGIRILVEAANDNADDAGLPLIGRVAAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V+ G  ++ + 
Sbjct: 96  AQEHVEAHYQVDPGMFRPQADFLLRVHGESMKNIGIMDGDLLAVHKTQDVHNGQVVVAR- 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  +    + L + N  +    V++
Sbjct: 155 VEDDVTVKRLERKGA-KVLLHAENEAFSPIEVDL 187


>gi|13431650|sp|Q9PH24|LEXA_XYLFA RecName: Full=LexA repressor
          Length = 211

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 23/209 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I        ++PS   +AR  G            G+              ++ 
Sbjct: 7   QQAILSLITNHINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 56

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   +     ++   T    +   +L  P  G            G           
Sbjct: 57  RVPRQARGIRLKHLTEVDETALALQSEDVLRLPVLGRVAAGQPIGADIGEG--------R 108

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               + ++     D   + Q  SM       GD++ ++     + G  ++ +    +I  
Sbjct: 109 VVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVARID-DEITV 167

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L+      I L+  N  +    V    
Sbjct: 168 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 195


>gi|153212036|ref|ZP_01947853.1| repressor protein C2 [Vibrio cholerae 1587]
 gi|124116832|gb|EAY35652.1| repressor protein C2 [Vibrio cholerae 1587]
          Length = 225

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 62/226 (27%), Gaps = 23/226 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARK-------AGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           + + + ++    +  +T   L  K       A  +  + +  +    +            
Sbjct: 2   ETLGKRVEWRRTQLKITQDELVTKVKKLLPDASFNRVTVSNIENEVQKSFKENVFLVVCR 61

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTV 118
            +    +        +        +                 G +     P  N+    +
Sbjct: 62  VLKCRPDWLAFGTGPVEDKGPNIAQVGPPVEQKCPILSWVQAGMWTEMGSPVSNEDVELM 121

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIK-PR 176
             P   S               + +  SM   Y +GD L ++    +   GD ++     
Sbjct: 122 PCPVKCS---------AGTYVLRVRGDSMRHEYEEGDYLFVDPTKIEPANGDYVIAMLED 172

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPV--DTVEMSDIE-WIARIL 219
           + +   K  I   GR   L + N  YP     + ++     + +++
Sbjct: 173 SKEATFKQYIELDGRK-MLKATNPDYPPEMRFLPINGTCLILGKVI 217


>gi|22536726|ref|NP_687577.1| prophage LambdaSa1, repressor protein [Streptococcus agalactiae
           2603V/R]
 gi|22533569|gb|AAM99449.1|AE014217_4 prophage LambdaSa1, repressor protein, putative [Streptococcus
           agalactiae 2603V/R]
          Length = 265

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 76/258 (29%), Gaps = 48/258 (18%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK--RFGIEGRNRWPSTESIFKILAATN 66
           + + I +  + +NL+ +  A+++G+     +  +  R    G+   PS   I K+     
Sbjct: 3   LGKYIKKYRDTNNLSMAEFAKESGISKAYVSILEKNRDPRNGKEIIPSIPIIKKVSDTIG 62

Query: 67  ETICQLLDLPFSDG-----------------------------RTTEKKEKEIPLLYFPP 97
            +   LL+    +                              +  ++K           
Sbjct: 63  ISFDDLLNSLDENQIVALNETKTEKNLTSSTLQKITSTSSQLEQPRQEKVLSFANEQLEE 122

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY---------------AIQTQDTRHKT 142
                            + T  V  + +   G Y                    DT  K 
Sbjct: 123 QNKVVSMFDRKVEETENYITDYVEGLVAAGLGAYQEDNLHMEVKLRADDVPDKYDTIAKV 182

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM PL +  D+L +  + QV+  D  +     G    K L      +  L SLN  Y
Sbjct: 183 AGNSMEPLIQDNDLLFVKVSSQVDMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNKSY 241

Query: 203 PVDTVEMSD-IEWIARIL 219
               +  +D I  I  ++
Sbjct: 242 EEIYLSENDNIRTIGEVV 259


>gi|15836727|ref|NP_297415.1| LexA repressor [Xylella fastidiosa 9a5c]
 gi|9104904|gb|AAF82935.1|AE003865_12 LexA repressor [Xylella fastidiosa 9a5c]
          Length = 223

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 23/209 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I        ++PS   +AR  G            G+              ++ 
Sbjct: 19  QQAILSLITNHINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 68

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   +     ++   T    +   +L  P  G            G           
Sbjct: 69  RVPRQARGIRLKHLTEVDETALALQSEDVLRLPVLGRVAAGQPIGADIGEG--------R 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               + ++     D   + Q  SM       GD++ ++     + G  ++ +    +I  
Sbjct: 121 VVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVARID-DEITV 179

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L+      I L+  N  +    V    
Sbjct: 180 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 207


>gi|329122224|ref|ZP_08250815.1| hypothetical protein HMPREF9095_0033 [Haemophilus aegyptius ATCC
           11116]
 gi|327474070|gb|EGF19482.1| hypothetical protein HMPREF9095_0033 [Haemophilus aegyptius ATCC
           11116]
          Length = 322

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 68/256 (26%), Gaps = 48/256 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+ S       +  +     +  +  A   G+   S  K       G  R P    I +
Sbjct: 68  MTTLSG-----RLKALLVEKGINQTEFANMIGIAQPSMQKIL----AGETRNPR--KIVE 116

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK--------------------------EIPLLY 94
           I      T   LL    +   +T +  +                          +   L 
Sbjct: 117 IAKELGTTPDYLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLQKQQVSLK 176

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQDT 145
             P+    F                 P      +                        + 
Sbjct: 177 TKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFNE 236

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PV 204
           SM P+  K D++ +++  +   G+ + +     ++  + L       ++ ++ N      
Sbjct: 237 SMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGSS 296

Query: 205 DTV-EMSDIEWIARIL 219
             + ++S +  + R +
Sbjct: 297 FEIDDLSRLNVLGRCV 312



 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 11/79 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+       E +  +    N+T + LA   G    + +   +   + + R     +I +
Sbjct: 1  MTTL-----GERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49

Query: 61 ILAATNETICQLLDLPFSD 79
          I  A       L       
Sbjct: 50 IANALGVDPNWLKYGSTKM 68


>gi|330971619|gb|EGH71685.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 119

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 6/95 (6%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                       SM    + G IL ++  +       +      G +  + L       +
Sbjct: 13  PKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHGGILRVRYLYRLPNGGL 72

Query: 194 DLMSLNCC-YPVDTVEMSD-----IEWIARILWAS 222
            L S N   YP +     D     I  +  I W S
Sbjct: 73  RLRSHNDAEYPDELFSAEDIDREKIRILGWIFWWS 107


>gi|323159200|gb|EFZ45190.1| peptidase S24-like family protein [Escherichia coli E128010]
          Length = 103

 Score = 72.1 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           I       +    SM P +++GDI+I++  +    G+ ++ K    +   K         
Sbjct: 6   IPETCFALRIDGDSMQPEFKEGDIVIIDPDLCPAPGEFVVAKNDGHEATFKKYRPLGIGI 65

Query: 193 --IDLMSLNCCYPVDTVEMSDIEWIA 216
              +L+ LN  YP+      +++ I 
Sbjct: 66  DDFELIPLNPDYPIFRSADMNLQIIG 91


>gi|78779740|ref|YP_397852.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713239|gb|ABB50416.1| SOS-response transcriptional repressor, LexA [Prochlorococcus
           marinus str. MIT 9312]
          Length = 205

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 46/188 (24%), Gaps = 11/188 (5%)

Query: 41  SKRFGIEGRNRWPSTESIFKILA-ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
             R  +      PS   + + +   +   I   L      G    ++ K   L       
Sbjct: 18  WIRDYMNEFQHSPSIRQMMQAMGLKSPAPIQSRLKHLQDKGFIKWQEGKARTLQIVEDVF 77

Query: 100 SGGFFDSGVFPTGNKWNTV-GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
             G    G    G    T     E           +           SM       GD +
Sbjct: 78  RQGIPILGSIAAGGLIETFNDFQEELD--ISSVIKKKGLFALIVNGDSMKDAFIADGDTV 135

Query: 158 ILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           +L        +  G  +           K    + G  + L + N  Y    +E   I  
Sbjct: 136 LLEPIESTGSIKNGTIVSAYIPGSGATLKYFYKK-GNKVSLEAANPNYSPIVLENEQISI 194

Query: 215 IARI--LW 220
             R+  +W
Sbjct: 195 QGRLCAVW 202


>gi|88800078|ref|ZP_01115648.1| LexA repressor [Reinekea sp. MED297]
 gi|88777204|gb|EAR08409.1| LexA repressor [Reinekea sp. MED297]
          Length = 200

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 39/216 (18%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I    E     P  + +A+  G    +                + E
Sbjct: 1   MEKLTARQQQVLDVIKDNIEDTGYPPTRAEIAKTLGFKSPN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                   +E            P        S V    +   
Sbjct: 45  EHIKALARKGYIEIVQGASRGIRLPESESGL---------PVVGRVAAGSPVLAEEHVAE 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            V +P+            T D   + Q  SM  +   + D++ ++   +V  GD ++ + 
Sbjct: 96  YVDLPKGLFH-------PTADFLLQVQGLSMKNIGILEDDLIAVHKTDRVRNGDIVVAR- 147

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K    + G ++ L   N  +    V + +
Sbjct: 148 VGDDVTVKRYEKK-GHTVTLYPENDDFEPIQVNLRE 182


>gi|297250266|ref|ZP_06863965.2| putative repressor protein [Neisseria polysaccharea ATCC 43768]
 gi|296839394|gb|EFH23332.1| putative repressor protein [Neisseria polysaccharea ATCC 43768]
          Length = 190

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
            + +    +  SM  +   GD +++N A      D L +     D+  K +       + 
Sbjct: 97  DKLSVIAVKGDSMEGILNHGDNILINHAET-EPRDGLYVLRIGNDLFVKRVQRMP-GKLL 154

Query: 195 LMSLNCCYPVDTVEM----SDIEWIARILW 220
           + S N  Y    +++     DI  + R+ W
Sbjct: 155 VTSANPHYAPFEIDLSHTDDDIAIVGRVEW 184


>gi|150020298|ref|YP_001305652.1| XRE family transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149792819|gb|ABR30267.1| transcriptional regulator, XRE family [Thermosipho melanesiensis
           BI429]
          Length = 244

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 23/229 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E I ++    +++   LA++ G+   S +  +   I           I KI   +  
Sbjct: 2   DLGEKIKQLRLERDISQEQLAKRLGISRESISHYENNRIVPPVHILR--EIAKIFNVSVN 59

Query: 68  TICQLLDLPFSDGRTT----EKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPE 122
              +      +    +        +         S S G   +            +  P 
Sbjct: 60  YFFEEEHYDKNVKGESELVDYNIPQNFMGFMVVGSHSRGKLLNNKISKKQKGIPVLRFPN 119

Query: 123 IRSPHN----------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGD- 169
                                +  D   +     + PL  KG +L++++        G+ 
Sbjct: 120 PSEGEPENQLIKVRYIDYLQKKDIDYALRLNSDIIEPLIPKGALLLVSTRNNRLPQNGEL 179

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +        +       ++G ++ L++ N  Y        D ++   +
Sbjct: 180 IVYYLNGKFGV---RWYFQKGDNVILIAENSKYLPIITTRVDFKFAGIV 225


>gi|330825883|ref|YP_004389186.1| peptidase S24/S26A/S26B [Alicycliphilus denitrificans K601]
 gi|329311255|gb|AEB85670.1| Peptidase S24/S26A/S26B, conserved region [Alicycliphilus
           denitrificans K601]
          Length = 189

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 55/194 (28%), Gaps = 33/194 (17%)

Query: 31  AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90
           AG+   +    +R+        P  ES  ++ A    +  +++              + I
Sbjct: 13  AGITQRAAQSVRRWFDASEPGLPDLESFARLCAGLGCSADEIIGALRPHADDEVHCAQLI 72

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
            +     + +      G                                 +     M P 
Sbjct: 73  QVANCIQAITDSLAHHGQLGIP---------------------------MQVPGDEMAPH 105

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT---- 206
            + GD++ ++SA+    G+ +      G +  + +  R  RSI L   N  Y        
Sbjct: 106 LKAGDLVFVDSAVTQLAGNGIYAFNCNGSLFIRRVERRMDRSIVLKCDNKAYQDYEWTGA 165

Query: 207 --VEMSDIEWIARI 218
                  +E + ++
Sbjct: 166 TAAAKRRVEILGKV 179


>gi|53803557|ref|YP_114590.1| LexA repressor [Methylococcus capsulatus str. Bath]
 gi|71658816|sp|Q605V8|LEXA_METCA RecName: Full=LexA repressor
 gi|53757318|gb|AAU91609.1| LexA repressor [Methylococcus capsulatus str. Bath]
          Length = 202

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 39/226 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++I + I R  E     P  + +AR  G+                       
Sbjct: 1   MKPLTVRQREILDCIRRSVENEGFPPTIAEIARAIGVSSP-------------------- 40

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                       + + L      G           +     +   G    G    G    
Sbjct: 41  ----------HGVREQLRALERKGVIELIPSASRGIRLLARAEEPGLPLIGKVAAGRPLL 90

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
           T    E              D   + Q  SM       GD+L++  A +   G  ++++ 
Sbjct: 91  TEAQVERYCQLGPELFEHKGDYLLRVQGMSMRDAGIIDGDLLVVQQAQEARSGQIVVVR- 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARIL 219
              ++  K L    G    L   N  + V  V+     +     ++
Sbjct: 150 LHDEVTVKRL-RLEGALAYLEPANPEFSVIAVDPERQPLCIEGIVV 194


>gi|15988315|pdb|1JHC|A Chain A, Lexa S119a C-Terminal Tryptic Fragment
          Length = 137

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 3/116 (2%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155
                G    G    G         E     +        D   +    +M  +    GD
Sbjct: 3   QEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMAMKDIGIMDGD 62

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           +L ++    V  G  ++ +    ++  K L  + G  ++L+  N  +    V++  
Sbjct: 63  LLAVHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 116


>gi|307129325|ref|YP_003881341.1| DNA-binding transcriptional repressor of SOS regulon [Dickeya
           dadantii 3937]
 gi|306526854|gb|ADM96784.1| DNA-binding transcriptional repressor of SOS regulon [Dickeya
           dadantii 3937]
          Length = 203

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 37/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTTRQQQVYDLIRDHISQTGMPPTRAEIASQLGF-----------------RSPNAA 43

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         + L      G           +         G    G    G    
Sbjct: 44  E-------------EHLKALARKGVIEIVTGASRGIRLLMEEEDQGLPLIGRVAAGEPLL 90

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 91  AQQHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L++ N  +    V++ +
Sbjct: 151 -EDEVTVKRLKKQ-GNVVQLLAENKEFAPIVVDLRE 184


>gi|261363945|ref|ZP_05976828.1| putative repressor protein [Neisseria mucosa ATCC 25996]
 gi|288567968|gb|EFC89528.1| putative repressor protein [Neisseria mucosa ATCC 25996]
          Length = 190

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
            + +    +  SM  +   GD +++N A      D L +     D+  K +       + 
Sbjct: 97  DKLSVIAVKGDSMEGILNHGDNILINHAET-EPRDGLYVLRIGNDLFVKRVQRMP-GKLL 154

Query: 195 LMSLNCCYPVDTVEM----SDIEWIARILW 220
           + S N  Y    +++     DI  + R+ W
Sbjct: 155 VTSANPHYAPFEIDLSHTDDDIAIVGRVEW 184


>gi|325285953|ref|YP_004261743.1| peptidase S24/S26A/S26B [Cellulophaga lytica DSM 7489]
 gi|324321407|gb|ADY28872.1| Peptidase S24/S26A/S26B, conserved region [Cellulophaga lytica DSM
           7489]
          Length = 144

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 4/127 (3%)

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSMLPL-YR 152
              S S   F       G         E R   +             +    SM+     
Sbjct: 13  DASSKSTSIFVDTGISAGFPSPADDFKENRISLDKELIKNPEATFFARVSGESMIGAGLE 72

Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
             D+L+++ +++       +     G+   K L       + L   N  Y    +   + 
Sbjct: 73  DNDLLVIDRSLEPAHNKIAV-CYLDGEFTVKRL-KVENNLVWLQPENPNYKPIQITEENN 130

Query: 213 EWIARIL 219
             I  I+
Sbjct: 131 FIIWGIV 137


>gi|299533246|ref|ZP_07046630.1| putative phage repressor [Comamonas testosteroni S44]
 gi|298718776|gb|EFI59749.1| putative phage repressor [Comamonas testosteroni S44]
          Length = 220

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 29/218 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +AI R+ +          + AG  +   +  +        R      ESI K       
Sbjct: 22  GKAIGRLRDEM--------KAAGYAIGQGTLARIIAGDTGVR-----MESIQKFADFFQI 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +               E +   +P+         G        T        +   R   
Sbjct: 69  S-----TGSLLHEPIEEGENDFVPVARLSVQVGAGNGRPVDVVTELGL----LQFRRDFL 119

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                          +  SM P  R G +L+LN A +     ++      G+++ K    
Sbjct: 120 RSAGVSPINSAVVTVKGMSMEPTIRDGSVLLLNRADREPRAGQIYAFSWDGEMLVKRFQ- 178

Query: 188 RRGRSIDLMSLNCC---YPVDTVE-MSDIEWIARILWA 221
             G     +S N     YP   ++  ++     R +W 
Sbjct: 179 LVGGQWRAVSDNADKSEYPDIIIDGKAETLIQGRAIWV 216


>gi|158340060|ref|YP_001521230.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina
           MBIC11017]
 gi|158310301|gb|ABW31916.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina
           MBIC11017]
          Length = 144

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172
             + +  P        +          +    SM        D++I++ ++    G  ++
Sbjct: 32  ADDHLQNPLNLD--EALIPHPGATFLMRVDGDSMKGCGIFSEDLVIVDRSLNPVDGSVII 89

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K    +    I L + N  YP   ++      +  ++
Sbjct: 90  AVLD-GEFTVKRF-RQSNGRILLAAENPDYPPIVIQDGSDFHVWGVV 134


>gi|257784573|ref|YP_003179790.1| SOS-response transcriptional repressor, LexA [Atopobium parvulum
           DSM 20469]
 gi|257473080|gb|ACV51199.1| SOS-response transcriptional repressor, LexA [Atopobium parvulum
           DSM 20469]
          Length = 217

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 64/216 (29%), Gaps = 25/216 (11%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFKILA 63
           I++ I    ++H   PS   +     L  P++ +   +   +    +R P      KI++
Sbjct: 13  IYDYICSYTDQHGYPPSVREIGTAVNLASPSTVHMHLKVLEQFGLIDRDPKKPRTMKIVS 72

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  Q  +   +       ++    ++  P         + +    N   ++ +P  
Sbjct: 73  -------QASNASDTAKLAPVTQDVANNVISLP-LVGRVAAGTPILAEQNVEESLSLPTS 124

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                      +     + +  SM+      GD +++      + G+ ++          
Sbjct: 125 IVG-------DSSSFILRVRGESMINAGIFDGDYIVVKEQQDAHDGEIVVALID-DSATV 176

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K         I L   N       V+      + R+
Sbjct: 177 KTFYR-ENDRIRLQPENDFMEPIYVKNP--VILGRV 209


>gi|87301143|ref|ZP_01083984.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           WH 5701]
 gi|87284111|gb|EAQ76064.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           WH 5701]
          Length = 212

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 53/190 (27%), Gaps = 7/190 (3%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL-DLPFSDGRTTEKKEKEIPLL 93
                      I+     PS   + + +   +    Q         G  T ++ +   L 
Sbjct: 19  QQQLYDWLVQYIQQHRHSPSIRQMMEAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQ 78

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YR 152
              PSG+GG    G    G    +      R     +   +           SM+     
Sbjct: 79  LLGPSGTGGIPVLGSVAAGGLIESFDDVRERLDLAPLLDTRG-LFALTVNGDSMVDAHID 137

Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            GDI+++   I       G  +           K    + G  + L + N  Y    +E 
Sbjct: 138 DGDIVLMEPVIDPARLRPGTIVAAHVAGSGTTLKHFSCK-GGKVRLEAANPAYAPIELEA 196

Query: 210 SDIEWIARIL 219
             +    R++
Sbjct: 197 EQVTVQGRMV 206


>gi|308187276|ref|YP_003931407.1| LexA repressor [Pantoea vagans C9-1]
 gi|308057786|gb|ADO09958.1| LexA repressor [Pantoea vagans C9-1]
          Length = 210

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 75/220 (34%), Gaps = 22/220 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             ++ + + I    +   LT   LA++  +   + ++ ++         P  E++ ++  
Sbjct: 1   MKNETLGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEET-----LPRGENLLRLAE 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A   T   L+D           +     L   P              +  +   +     
Sbjct: 56  ALGCTPAYLIDGD----GPVFSENSWAGLHQIPLLSQRDVAQWLNDASSVRHELL----- 106

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
               +   A+  Q    + ++ +M P   +GD++I++ ++    GD  ++  +  + + +
Sbjct: 107 ---MHNDMALSQQSFAIRVEEQAMTPAILRGDVVIIDPSLAPQPGD-CVLAMQQQNALLR 162

Query: 184 VLISRRGRS----IDLMSLNCCYPVDTVEMSDIEWIARIL 219
               R         +L  +N  +P        ++ I  ++
Sbjct: 163 TWRQRGSEEGVAQFELAPVNINFPELHSSRDSLQLIGTLV 202


>gi|212703112|ref|ZP_03311240.1| hypothetical protein DESPIG_01151 [Desulfovibrio piger ATCC 29098]
 gi|212673378|gb|EEB33861.1| hypothetical protein DESPIG_01151 [Desulfovibrio piger ATCC 29098]
          Length = 134

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 11/131 (8%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI-----QTQDTRHKTQDTSMLPLYRKGD 155
                      G           RS       +            +    SM P     D
Sbjct: 1   MIPMVEARLSAGQGSLQTDGNSERSYAFRSDFLHRKGNPDNMVLMRVSGDSMQPEILNND 60

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---- 211
           +++L+ +       R+        I  K +       + L S N  YP   +++ D    
Sbjct: 61  VVLLDQSKTDILPGRIYAVGFEEAIYLKRVDMLP-GKVILKSANPAYPPVELDIRDQQRD 119

Query: 212 -IEWIARILWA 221
               I ++LW+
Sbjct: 120 AFRVIGQVLWS 130


>gi|149918134|ref|ZP_01906627.1| LexA repressor [Plesiocystis pacifica SIR-1]
 gi|149821139|gb|EDM80545.1| LexA repressor [Plesiocystis pacifica SIR-1]
          Length = 207

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 9/119 (7%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIY---AIQTQDTRHKTQDTSM-LPLYRKGDILILNSAI 163
               G           R   +  +   A   +      +  SM       GD + +    
Sbjct: 84  QVAAGQPILAQENISDRVTIDRFFVGKAPSKEVFGLVIRGDSMIEDGIYDGDYIFVRKQS 143

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
               G+  +     G+   K +    G  + L   N       V  S+   I+ I +++
Sbjct: 144 TAENGEIAV-VMIEGEATCKRVF-HEGDRVRLQPANETMAPIYVHRSEFRAIDVIGKVV 200


>gi|161784699|emb|CAP54238.1| putative regulator protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 273

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 75/266 (28%), Gaps = 53/266 (19%)

Query: 1   MTSFS----HKKIWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           M   S    +++I   + R+ E  + T     +A +  +  ++ +           R   
Sbjct: 8   MRDLSDLAKNRQIEPMVIRLREVVDRTGGAKAVAARTDIPLSTLSGYLSG------RELK 61

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN- 113
                KI  A   ++  L               ++                +     G+ 
Sbjct: 62  LSVARKITEACGVSLDWLAAGEDGPAAREFGNARQAGPESVEFLNYDVILSAHQGVDGDS 121

Query: 114 --KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR- 170
                 + +P    P + I +     +    +  SM P+   GDIL+      +N     
Sbjct: 122 SYIETRISIPRDFLPLS-IQSNTDNISAVTAKCDSMNPIIDDGDILLERDDFGLNRNMGT 180

Query: 171 -------------------------LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
                                    +        ++ + LI +   ++ ++S N  YP +
Sbjct: 181 QIAENLIQHAVWIGGQHGHTLTSGSIYALRVENTLLVRRLILKTNGNVQVISENPRYPTE 240

Query: 206 TVEMSDI-----------EWIARILW 220
            +   D+             I R++W
Sbjct: 241 ELNAEDVRRMVQDDGFPARIIGRVIW 266


>gi|148359239|ref|YP_001250446.1| SOS (error prone) mutagenesis protein UmuD [Legionella pneumophila
           str. Corby]
 gi|296107284|ref|YP_003618984.1| umuD SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148281012|gb|ABQ55100.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
           pneumophila str. Corby]
 gi|295649185|gb|ADG25032.1| umuD SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610400|emb|CBW99969.1| hypothetical protein LPW_17261 [Legionella pneumophila 130b]
          Length = 174

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +    +   +  +          +    SM+      GDILI++  I+   G  ++
Sbjct: 64  GDDYIE--SMLDLNEYLIKHPASTFFVRASGESMINAGIYSGDILIVDRGIEATHGKIVI 121

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +    G++  K L  + G+ + L++ N  +P   +       I  ++
Sbjct: 122 VALN-GELTVKRLSRQHGQ-VKLLAENPDFPPIDITEEYDMVIWGVV 166


>gi|145588889|ref|YP_001155486.1| putative prophage repressor [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047295|gb|ABP33922.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 163

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++ +   +        +  SML      GD ++++ A++    D ++    + +
Sbjct: 50  EDGLDLNHYLVQNKPATFMFTVKGDSMLGAGICDGDKVVVDKALKPKHKDIVVAVVDS-E 108

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              K L   R   I+L   N  +   T  E S+++    ++
Sbjct: 109 YTIKRLYQLR-GRIELQPENPHFEPITFNEGSELQIWGVVV 148


>gi|212710565|ref|ZP_03318693.1| hypothetical protein PROVALCAL_01628 [Providencia alcalifaciens DSM
           30120]
 gi|212686802|gb|EEB46330.1| hypothetical protein PROVALCAL_01628 [Providencia alcalifaciens DSM
           30120]
          Length = 205

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G         E     +        D   +    SM  +    GD+L ++    V+ 
Sbjct: 85  VAAGEPLLAQEHIESHYQVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNVHN 144

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           G  ++ +    ++  K    ++G  ++L++ N  +    V++ +
Sbjct: 145 GQIVVARI-EDEVTVKRF-KQQGNRVELIAENPEFAPIVVDLRE 186


>gi|319762239|ref|YP_004126176.1| lexa repressor [Alicycliphilus denitrificans BC]
 gi|317116800|gb|ADU99288.1| LexA repressor [Alicycliphilus denitrificans BC]
          Length = 193

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             PE+ +  + +     + + HK +  SM      +GD++++        GD ++     
Sbjct: 86  EEPEVLTIDDYLIDDPNRTSLHKVRGDSMKDAGILEGDLVVVEHHTPTKPGDIVVAWAD- 144

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++  K L+        L   N  Y       + +E +  ++
Sbjct: 145 NELTVKTLLLDPQSRYYLQPANSAYKPI-FPATSLEVMGVVI 185


>gi|225855406|ref|YP_002736918.1| cI repressor [Streptococcus pneumoniae JJA]
 gi|225724232|gb|ACO20085.1| cI repressor [Streptococcus pneumoniae JJA]
          Length = 250

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 68/248 (27%), Gaps = 44/248 (17%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW---------------- 52
           +  +I  + +   LT   LA   G    + +  +    +   +                 
Sbjct: 4   LGSSIKEVRKSKKLTQKKLAELTGFKQNTISNHENGNRQLDEKDIRIYAQALEVSPQYLF 63

Query: 53  -----------PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS--- 98
                      P+T  I  I           +          ++ E+E  +     +   
Sbjct: 64  DLAKPSSIEIIPTTSPIQTIYDELEPPRQGKVLNYAKRQLKEQRNEEETKINEVSENIIR 123

Query: 99  -----GSGGFFDSGVFPTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR 152
                 +     +GV   G+       +    S +                  SM P  +
Sbjct: 124 LDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYDAIA-YVVGNSMEPKIK 182

Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-D 211
            GD L + +  QV+     + +   G    K L  +      L SLN  Y    ++ S D
Sbjct: 183 NGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDYEDIHLDESND 236

Query: 212 IEWIARIL 219
           I  I  ++
Sbjct: 237 IRTIGEVV 244


>gi|195970156|ref|NP_386132.2| putative phage repressor protein [Sinorhizobium meliloti 1021]
 gi|307311314|ref|ZP_07590957.1| putative phage repressor [Sinorhizobium meliloti BL225C]
 gi|307318847|ref|ZP_07598279.1| putative phage repressor [Sinorhizobium meliloti AK83]
 gi|187904193|emb|CAC46605.2| Phage-related repressor protein C [Sinorhizobium meliloti 1021]
 gi|306895568|gb|EFN26322.1| putative phage repressor [Sinorhizobium meliloti AK83]
 gi|306899615|gb|EFN30243.1| putative phage repressor [Sinorhizobium meliloti BL225C]
          Length = 229

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 66/228 (28%), Gaps = 30/228 (13%)

Query: 11  EAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIE---------GR-----NRWPST 55
           E +     +      S  A   G+  +++   +    E         GR       W  T
Sbjct: 6   ERLREARVKAGYRFASDAANALGIVASTYRAHENGQNEFELSEAEVYGRKFNVDPLWLLT 65

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            +  +I   T   +   +            K             + G  D      GN  
Sbjct: 66  GTDRRI--PTGSALGSTMTEIDVPNARIGAKVIGQGEKIPVFGQAVGGVDGEFIMNGNVL 123

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
             V  P I S  +G YA             SM P Y  G++  ++ + +V  GD ++ + 
Sbjct: 124 YEVMAPPILSDISGAYA-------VSVSGDSMYPRYEDGEVCFVDPSRRVRKGDYVIAQI 176

Query: 176 RTGD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           R  +        K  +      + L   N  +     E + +  +  I
Sbjct: 177 RLEEGGALLAYVKKFVRHNSSELVLEQFNP-HKELRFEANTVHSVHYI 223


>gi|160872667|ref|ZP_02062799.1| peptidase, family S24 [Rickettsiella grylli]
 gi|159121466|gb|EDP46804.1| peptidase, family S24 [Rickettsiella grylli]
          Length = 211

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 24/206 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  +     +  S LAR+ G+     ++      +     P   ++  I      +I 
Sbjct: 3   RILKELMAELGINESELARRTGIGQPVVHRICSGETD----NPKVATLSPIANFFAISIS 58

Query: 71  Q-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           Q         D          +  ++IPLL +              P  +    V     
Sbjct: 59  QLIGDEPLPADRIPGTFNPGVQGWRQIPLLTWKQVLYWPDLSEKSTPLPSISTDVP---- 114

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                    +         +DT+M P + +G +L+++  ++ N  D  ++     ++   
Sbjct: 115 ---------MSQYAYAVSARDTTMEPRFPEGTLLLIDPDLKPNSLDFAIVHIEGHELPHF 165

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEM 209
             I   G    L  LN  +    ++ 
Sbjct: 166 KQILIDGGHTILKPLNTDFKTLLLDK 191


>gi|56459373|ref|YP_154654.1| LexA repressor [Idiomarina loihiensis L2TR]
 gi|61213260|sp|Q5QUP5|LEXA_IDILO RecName: Full=LexA repressor
 gi|56178383|gb|AAV81105.1| SOS-response transcriptional repressor [Idiomarina loihiensis L2TR]
          Length = 205

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 61/216 (28%), Gaps = 35/216 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I        + P  + +A K G    +                S E
Sbjct: 1   MRPLTPRQSEILELIKDNLHATGMPPTRAEIAHKLGFRSAN----------------SAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                        + I L+      + G    G    G    
Sbjct: 45  EHLKALARKGVIEILPGM------------SRGIRLVGDDYDIADGLPLIGQVAAGEPLL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +            K    SM  +    GD+L ++   Q   G  ++ + 
Sbjct: 93  AEQHVEGHYKIDESLFHPAASFLLKVNGMSMRDIGILDGDLLAVHKTEQARNGQIVVAR- 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K    +RG++I L   N  +   TV +++
Sbjct: 152 VEDEVTVKRF-EQRGKTILLHPENEDFSTITVNLAE 186


>gi|213961921|ref|ZP_03390186.1| transcriptional regulator [Capnocytophaga sputigena Capno]
 gi|213955274|gb|EEB66591.1| transcriptional regulator [Capnocytophaga sputigena Capno]
          Length = 258

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 64/216 (29%), Gaps = 8/216 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E I +  +   L+ S   +   +     N   +     +      E   ++      
Sbjct: 2   NVKERIKKFIDHEGLSISAFEKTIEVSNGYVNSISKNIGIDKLNVI-VEKYPQLSLEWLI 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN--KWNTVGVPEIRS 125
           T    +  P      T K      ++                  G    ++ +   E   
Sbjct: 61  TGKGEMLKPTLPTTKTNKLLMPKVVVVDDKDNERIPLVPIRAQAGYLTGYDDITFIESLP 120

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVA 182
            ++            + +  SM P  +    ++   ++  + ++     ++  +   I+ 
Sbjct: 121 TYSLPNMTNGTYRMFQVKGLSMYPTLQDSSYVVGRFVDDWLALSSNRVCVVVTQNDGIIV 180

Query: 183 KVLIS--RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           K + +   +  ++   S N  +P  +V   DI+ I 
Sbjct: 181 KRITNTLEKYGTLYCRSDNRDFPHLSVAAEDIKEIW 216


>gi|197116899|ref|YP_002137326.1| LexA repressor [Geobacter bemidjiensis Bem]
 gi|197086259|gb|ACH37530.1| LexA repressor [Geobacter bemidjiensis Bem]
          Length = 249

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 26/231 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL--TPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTES 57
           MT    K++ + I   AERH    +   +A   G     +     R   +      + + 
Sbjct: 1   MTP-KQKRVLDFILSFAERHGFQPSQQEIASGCGFGSLGTVQHYLRALEKDG--HLTRQW 57

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K         C       +         K  P              +   P       
Sbjct: 58  NAKRGLQLANPPCPPFAKGGTQVLAQRFVGKYSPGSPESQELHFAEGGNPQTPAVAPIIG 117

Query: 118 VGVP----------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
           + +P                          A        + +  SM+ +    GD + ++
Sbjct: 118 MELPLVGIVAAGRPVQAFQLADAIEVPSAMAGPGNVVY-EVRGDSMVEMGIMDGDYVAVH 176

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
                  G  ++     G I  K  + + G SI L   N       V   D
Sbjct: 177 PQAVAETGQTVI-AEVNGSITIKKYVRK-GNSIQLQPANSAMSPIMVTEDD 225


>gi|159528148|ref|YP_001542711.1| SOS response transcriptional regulator [Fluoribacter dumoffii]
 gi|159157993|dbj|BAF92682.1| SOS response transcriptional regulator [Fluoribacter dumoffii]
          Length = 168

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + +        +       +     +    SM       GD L+++ +I+ + G  ++
Sbjct: 58  ADDYIE--GYLDLNTKFIKHPSSTFVLQATGDSMVEAGIFSGDWLLVDRSIEPSDGRIVI 115

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  + G  + L+  N  +    +       I  ++
Sbjct: 116 AAVN-GELTVKRLSKK-GSQVQLLPANPKFKPIDITQECEMVIWGVV 160


>gi|145632102|ref|ZP_01787837.1| LexA repressor [Haemophilus influenzae 3655]
 gi|144987009|gb|EDJ93539.1| LexA repressor [Haemophilus influenzae 3655]
          Length = 207

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + + R  E   + P  + ++R+ G              E   +  S +
Sbjct: 1   MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +I+                             L         G    G    G    
Sbjct: 54  GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGCVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K    SM  +    GD+L ++S   V  G  ++ + 
Sbjct: 94  AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  I L + N  +    V + +
Sbjct: 154 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 187


>gi|260911961|ref|ZP_05918525.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633908|gb|EEX52034.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 231

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 63/226 (27%), Gaps = 10/226 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRF----GIEGRNRWPSTE 56
               +++ EA +   +   L  T   LA   G    + +K+ R       +   R  +  
Sbjct: 1   MDREERLREAFN-YVKSKGLVHTQKDLAVHMGTTEANMSKALRGDKLVLTDNFLRRFNQS 59

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                           +    +      ++      +                  G+  +
Sbjct: 60  FDNIFSYQWLCLGEGQMINDEAQTELLSQRLGRTASVGLSDEVYSIPLLPISAQGGSLND 119

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS--AIQVNCGDRLLIK 174
            V   +       I  I+  D        SM P Y  G  +++            R+ + 
Sbjct: 120 FVVSVKNNECEKIISPIKGVDYAITVSGESMSPEYPSGSQVLIKKINERAFIDWGRVYVL 179

Query: 175 PRTGDIVAKVLI-SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 V K L  S     +   S+N  YP   V M D+  + R+L
Sbjct: 180 DTCNGTVIKRLFPSDAAGCVVCKSINPEYPSFEVSMEDVYGVYRVL 225


>gi|294790734|ref|ZP_06755892.1| UmuD protein [Scardovia inopinata F0304]
 gi|294458631|gb|EFG26984.1| UmuD protein [Scardovia inopinata F0304]
          Length = 146

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 2/102 (1%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                 S    +          +    SM       GDILI++ ++     D ++     
Sbjct: 21  YFDGDFSFDENVITHPDTTFVVRVSGDSMEGAGIFNGDILIVDKSLAAEESDIVIAAIN- 79

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G++  K L+        L   N  YP   + + +   I  ++
Sbjct: 80  GELTVKRLLLNTDNLPFLHPENRAYPDIPLYLEEEVAIWGVV 121


>gi|260434281|ref|ZP_05788251.1| LexA repressor [Synechococcus sp. WH 8109]
 gi|260412155|gb|EEX05451.1| LexA repressor [Synechococcus sp. WH 8109]
          Length = 214

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 51/201 (25%), Gaps = 23/201 (11%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKILAATNETICQLLDLPFSDGRTTEK 85
           LA   G    S +  ++       R P+  +S  + L        Q              
Sbjct: 27  LADYIGTHRHSPS-IRQMMQAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQLLGDMV 85

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
               IP+L    +G             +    + +  +                      
Sbjct: 86  GAAGIPVLGAVAAGGLVTAFD------DVQEHLDLAPVLETRG--------LFALTVNGD 131

Query: 146 SMLP-LYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
           SM+      GD++++           G  +           K    +   ++ L + N  
Sbjct: 132 SMVDSHIADGDVVLMEPVQDPQRLRNGTVVSALVAGSGTTLKHFHRQGA-TVVLEAANPA 190

Query: 202 YPVDTVEMSDIEWIARI--LW 220
           Y    +    +E   R+  +W
Sbjct: 191 YQPIELPAEQVEVQGRLIAVW 211


>gi|261346654|ref|ZP_05974298.1| repressor LexA [Providencia rustigianii DSM 4541]
 gi|282565360|gb|EFB70895.1| repressor LexA [Providencia rustigianii DSM 4541]
          Length = 205

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 65/217 (29%), Gaps = 37/217 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   ++++  +     +  + P  + +A   G                  R P+  
Sbjct: 1   MKALTARQQQVYNLVRDHISQTGMPPTRAEIAASLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                        + I LL    +   G    G    G   
Sbjct: 44  EEHLKALARKGV------------IEIVSGASRGIRLLLEESNDDIGLPLIGRVAAGEPL 91

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +        D   +    SM  +    GD+L ++    V+ G  ++ +
Sbjct: 92  LAEEHIESHYHVDPELFKPHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNVHNGQVVVAR 151

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               ++  K    ++G  ++L++ N  +    V++  
Sbjct: 152 I-EDEVTVKRF-KQQGNRVELIAENPEFAPIVVDLRQ 186


>gi|309704840|emb|CBJ04191.1| e14 prophage; repressor protein phage e14 [Escherichia coli ETEC
           H10407]
          Length = 224

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H        ++ +      S  A     +PT  ++    G            I K
Sbjct: 1   MKTI-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58

Query: 61  ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      +      +         K+I L+        G +          ++ V 
Sbjct: 59  CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178
           +      +             +    SM+  YR GD++ ++  +    GD ++     TG
Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           +   K LI    +   L +LN  +P   ++++ +   I  ++
Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212


>gi|300948726|ref|ZP_07162802.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
 gi|300956201|ref|ZP_07168514.1| peptidase S24-like domain protein [Escherichia coli MS 175-1]
 gi|300974606|ref|ZP_07172667.1| peptidase S24-like domain protein [Escherichia coli MS 45-1]
 gi|284921949|emb|CBG35025.1| putative prophage repressor [Escherichia coli 042]
 gi|300316955|gb|EFJ66739.1| peptidase S24-like domain protein [Escherichia coli MS 175-1]
 gi|300410548|gb|EFJ94086.1| peptidase S24-like domain protein [Escherichia coli MS 45-1]
 gi|300451791|gb|EFK15411.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
 gi|315293024|gb|EFU52376.1| peptidase S24-like domain protein [Escherichia coli MS 153-1]
          Length = 212

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 21/211 (9%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S + I E I +     NL    L    G    S ++    G    +R+ S  S+ KIL 
Sbjct: 1   MSKQTISERITQRMHALNLKGKDLVNGTGASKGSVSQWMNGGGAPSSRYIS--SLAKILK 58

Query: 64  AT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              N  +             +    K +PLL    + S               + +    
Sbjct: 59  VNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSS 105

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRT 177
           I S    +  I         +  SM           G  + ++    V  G+ +L  P+ 
Sbjct: 106 ITSCVQLVGEIPVNTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKG 165

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                   +   G  I L+  N  YP   ++
Sbjct: 166 TTTPVIRKLEIEGPDILLVPTNPRYPSIMLD 196


>gi|291612660|ref|YP_003522817.1| phage repressor [Sideroxydans lithotrophicus ES-1]
 gi|291582772|gb|ADE10430.1| putative phage repressor [Sideroxydans lithotrophicus ES-1]
          Length = 242

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 52/204 (25%), Gaps = 15/204 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I   +     R        A +  +   +    KR     + +  S E + K     N
Sbjct: 10  DDIASRLRAFRLRTGKAQDVFALEIEIAYGT---YKRLEAGDKPKSESLEKLRKAGLNIN 66

Query: 67  E--TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF----PTGNKWNTVG- 119
              +    + L   D        +   +L                      G        
Sbjct: 67  WLLSGEGEMLLSDQDQHRPYDLGRAPTVLTAGEPDGNYVAIDKYVNVNGSAGPGAEVHEE 126

Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
                  ++R     I     +         SM P    GD ++++++      D +   
Sbjct: 127 AIVKVRVDLRLLRERIGNNFGKIKIASVSGDSMEPTLSHGDQVLVDTSCSRFIDDAIYAI 186

Query: 175 PRTGDIVAKVLISRRGRSIDLMSL 198
            + G +  K +  +   SI + S 
Sbjct: 187 QQDGHLRFKRIQLKLDGSIVVKSD 210


>gi|21241950|ref|NP_641532.1| LexA repressor [Xanthomonas axonopodis pv. citri str. 306]
 gi|294625891|ref|ZP_06704505.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|44888106|sp|Q8PN77|LEXA1_XANAC RecName: Full=LexA repressor 1
 gi|21107342|gb|AAM36068.1| LexA repressor [Xanthomonas axonopodis pv. citri str. 306]
 gi|292599801|gb|EFF43924.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 201

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M S   ++  +   +     +  ++PS   +A+  G          R   +   +  +  
Sbjct: 1   MPSLPPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALADA 52

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++L                 G         +P+L    +G          P G    
Sbjct: 53  GLIELLPN-------QKRGIRLPGGAGRDALLALPVLGRVAAG---------LPIGA--- 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +G+         +++++      + Q  SM+      GD++ ++ + +   G  ++ + 
Sbjct: 94  DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G+I  K L       I L+  N  +    V   
Sbjct: 153 D-GEITIKRLER-GAERIRLLPRNRAHAPIVVAAD 185


>gi|261341541|ref|ZP_05969399.1| repressor LexA [Enterobacter cancerogenus ATCC 35316]
 gi|288316340|gb|EFC55278.1| repressor LexA [Enterobacter cancerogenus ATCC 35316]
          Length = 202

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVFDLIRDHIGQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLVEEETGIPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIESHYQVDPGMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G ++ L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNTVQLLPENNEFTPIVVDLRE 183


>gi|149179486|ref|ZP_01858035.1| LexA repressor [Planctomyces maris DSM 8797]
 gi|148841673|gb|EDL56087.1| LexA repressor [Planctomyces maris DSM 8797]
          Length = 200

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 12/107 (11%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRL 171
                +          G           K +  SM       GD +I++       GD +
Sbjct: 98  QDDEHIDF--------GSLFDPDDQFCLKVKGVSMIEDQIADGDYVIVHKQNTCKEGDIV 149

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +      +   K   S  G  I L   N           +++ +  +
Sbjct: 150 VALVDGQEATLKRYYS-EGDRIRLEPANSSMQPIY--SKNVDILGVV 193


>gi|89901765|ref|YP_524236.1| LexA repressor [Rhodoferax ferrireducens T118]
 gi|123397057|sp|Q21U48|LEXA_RHOFD RecName: Full=LexA repressor
 gi|89346502|gb|ABD70705.1| SOS-response transcriptional repressor, LexA [Rhodoferax
           ferrireducens T118]
          Length = 224

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 14/213 (6%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              +   ++I + I          P+       L   S N ++                 
Sbjct: 5   PKLTARQQQILDLIQNAITLTGSPPTRAEIATELGFRSANAAEEHLQA---------LAR 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K          + + L     R+  +   +   L  P          G    G+      
Sbjct: 56  KGAIELVSGTSRGIRLKSEALRSINESRSKQFPLSLPGLSQLMLPLIGRVAAGSPILAQE 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
             +           +  D   K +  SM       GD+L + S      G  ++ +    
Sbjct: 116 HIDQTYYVESSLFQRKPDYLLKVRGMSMRDAGIMDGDLLAVQSTRDAKNGQIVVAR-LGD 174

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           ++  K    R    I+L   N  Y +  VE  +
Sbjct: 175 EVTVKRF-RRTKDLIELCPENPDYQIIVVEPGE 206


>gi|37676526|ref|NP_936922.1| hypothetical protein VVA0866 [Vibrio vulnificus YJ016]
 gi|37201068|dbj|BAC96892.1| hypothetical protein [Vibrio vulnificus YJ016]
          Length = 214

 Score = 71.7 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 16/194 (8%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           + + LA++ G  P+  ++      +  +R  + + +  I  A N     L  +       
Sbjct: 22  SQAELAQRIGRRPSYISRMLSDPSKTGHRRIADDMVDVITHAFNLPNTWLDTINHHSNLQ 81

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
           T     +I +     S         +         +             A        K 
Sbjct: 82  TGCTIAKINME---ASFKQNGEAEMINSEYLGELYIP------------ASFGVVDVIKV 126

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
               + P  + G+ ++L+   +   GD + +    T +++ K L + RG    +  +N  
Sbjct: 127 NGEGLFPRIKHGESIVLSRTAEPTPGDDVAIWLKETNELMIKTLTADRGGHYQVFDVNNA 186

Query: 202 YPVDTVEMSDIEWI 215
              +T++  DI  I
Sbjct: 187 SRPETIQKDDIRSI 200


>gi|238754679|ref|ZP_04616032.1| LexA repressor [Yersinia ruckeri ATCC 29473]
 gi|238707138|gb|EEP99502.1| LexA repressor [Yersinia ruckeri ATCC 29473]
          Length = 202

 Score = 71.7 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ +     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQQVYDLVRDHISQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIISGASRGIRLLMEDEEGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSLFKPNADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 183


>gi|315930558|gb|EFV09597.1| peptidase S24-like family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 243

 Score = 71.7 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 20/222 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKA-----GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           E + ++ +   ++ +  A+        +         R        + +  ++ K+L   
Sbjct: 13  EYLSQILKEKKISRAKFAQMLSENGYEITLDGITYWYRSENNQPEDYKNIITMAKVLEVP 72

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              +  + D   S  +   +         +  +G G    S           V V E   
Sbjct: 73  VSKLAPVNDSIKSFLQDDNQINFRYFPDIYASAGLGTSSQSEEVKI------VSVDENFL 126

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGDIV 181
                  I+      K    SM P+   GD +I++ +      ++  D ++ +    D+ 
Sbjct: 127 KEILDIPIKKSYDIIKINGDSMEPILSNGDFIIIDRSKNSLETISNADIVIFRKN-DDLF 185

Query: 182 AKVLISRR-GRSIDLMSLNCCYPVDTVEMSDI---EWIARIL 219
            K +        I L+S N  Y    V+ S+    E +  ++
Sbjct: 186 CKKIKKEPFEDYIFLVSENKKYEDKKVDNSEFEQCEILGAVV 227


>gi|145636699|ref|ZP_01792366.1| LexA repressor [Haemophilus influenzae PittHH]
 gi|145270225|gb|EDK10161.1| LexA repressor [Haemophilus influenzae PittHH]
          Length = 191

 Score = 71.7 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + + R  E   + P  + ++R+ G              E   +  S +
Sbjct: 1   MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +I+                             L         G    G    G    
Sbjct: 54  GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K    SM  +    GD+L ++S   V  G  ++ + 
Sbjct: 94  AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  I L + N  +    V + +
Sbjct: 154 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 187


>gi|238752157|ref|ZP_04613639.1| LexA repressor [Yersinia rohdei ATCC 43380]
 gi|238709630|gb|EEQ01866.1| LexA repressor [Yersinia rohdei ATCC 43380]
          Length = 202

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ +     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEDGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPAMFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 183


>gi|16129108|ref|NP_415663.1| e14 prophage; repressor protein phage e14 [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89107991|ref|AP_001771.1| repressor protein phage e14 [Escherichia coli str. K-12 substr.
           W3110]
 gi|91212005|ref|YP_541991.1| putative phage repressor [Escherichia coli UTI89]
 gi|117624884|ref|YP_853797.1| putative phage repressor [Escherichia coli APEC O1]
 gi|218559636|ref|YP_002392549.1| repressor protein phage e14; e14 prophage [Escherichia coli S88]
 gi|237706738|ref|ZP_04537219.1| repressor protein phage [Escherichia sp. 3_2_53FAA]
 gi|256018600|ref|ZP_05432465.1| repressor protein phage e14; e14 prophage [Shigella sp. D9]
 gi|300823465|ref|ZP_07103595.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
 gi|301020180|ref|ZP_07184306.1| peptidase S24-like domain protein [Escherichia coli MS 69-1]
 gi|331650000|ref|ZP_08351073.1| repressor protein phage e14 [Escherichia coli M605]
 gi|332279667|ref|ZP_08392080.1| repressor protein phage e14 [Shigella sp. D9]
 gi|14195551|sp|P75974|YMFK_ECOLI RecName: Full=Putative lambdoid prophage e14 repressor protein C2
 gi|1787391|gb|AAC74229.1| e14 prophage; repressor protein phage e14 [Escherichia coli str.
           K-12 substr. MG1655]
 gi|4062720|dbj|BAA35971.1| repressor protein phage e14 [Escherichia coli str. K12 substr.
           W3110]
 gi|91073579|gb|ABE08460.1| putative phage repressor [Escherichia coli UTI89]
 gi|115514008|gb|ABJ02083.1| putative phage repressor [Escherichia coli APEC O1]
 gi|218366405|emb|CAR04157.1| repressor protein phage e14; e14 prophage [Escherichia coli S88]
 gi|226899778|gb|EEH86037.1| repressor protein phage [Escherichia sp. 3_2_53FAA]
 gi|260449716|gb|ACX40138.1| peptidase S24 and S26 domain protein [Escherichia coli DH1]
 gi|294490545|gb|ADE89301.1| peptidase, S-24 domain protein [Escherichia coli IHE3034]
 gi|300398887|gb|EFJ82425.1| peptidase S24-like domain protein [Escherichia coli MS 69-1]
 gi|300524083|gb|EFK45152.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
 gi|307625781|gb|ADN70085.1| repressor protein phage e14; e14 prophage [Escherichia coli UM146]
 gi|315135778|dbj|BAJ42937.1| e14 prophage; repressor protein phage e14 [Escherichia coli DH1]
 gi|315284913|gb|EFU44358.1| peptidase S24-like domain protein [Escherichia coli MS 110-3]
 gi|323951131|gb|EGB47007.1| peptidase S24 [Escherichia coli H252]
 gi|331040945|gb|EGI13102.1| repressor protein phage e14 [Escherichia coli M605]
 gi|332102019|gb|EGJ05365.1| repressor protein phage e14 [Shigella sp. D9]
          Length = 224

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H        ++ +      S  A     +PT  ++    G            I K
Sbjct: 1   MKTI-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58

Query: 61  ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      +      +         K+I L+        G +          ++ V 
Sbjct: 59  CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178
           +      +             +    SM+  YR GD++ ++  +    GD ++     TG
Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           +   K LI    +   L +LN  +P   ++++ +   I  ++
Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212


>gi|85710795|ref|ZP_01041856.1| LexA repressor [Idiomarina baltica OS145]
 gi|85695199|gb|EAQ33136.1| LexA repressor [Idiomarina baltica OS145]
          Length = 205

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 35/216 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I    +   + P  + +A + G                R+   + E
Sbjct: 1   MRPLTPRQAEILELIKDNLQATGMPPTRAEIASRLGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +       I   +           ++E  +PL+    +G        +        
Sbjct: 46  HLKALAKKGVIEIMPGMSRGIRLVAEDIEEELGLPLIGQVAAGEPILAQEHIERHYQLDE 105

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
           ++  P  +                +    SM  +    GD+L ++   Q   G  ++ + 
Sbjct: 106 SMFYPSAQ-------------FLLRVNGMSMRNIGILDGDLLAVHKTEQARNGQIVVAR- 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K    ++GR + L   N  +    V+++ 
Sbjct: 152 VEDEVTVKRF-EQKGRQVLLHPENEEFSTIVVDLAQ 186


>gi|317485643|ref|ZP_07944517.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923104|gb|EFV44316.1| peptidase S24-like protein [Bilophila wadsworthia 3_1_6]
          Length = 205

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 30/217 (13%)

Query: 11  EAIDRMAERH----NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +AI+ + ++      +T   L +  G   ++F +  + G       P  + +   ++   
Sbjct: 7   KAIEWLNKKAEKAGGIT--NLGKTVGAPASTFFRVLKGGSP-----PGADKLLDWISQLG 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I    +                 ++    +GS       V       +          
Sbjct: 60  GKIVFPDERMEGYTLIP-------KVVAQAGAGSSLITSDEVLGMYAFRD--------DF 104

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +     +         SM P+ R  D ++++ +++      + +     +++ K + 
Sbjct: 105 LRRVGVHTKESVMLDVIGHSMEPMIRHKDTILVDQSVKELRDGDIFLVGFGEELLVKRVQ 164

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILW 220
               R   L S N  +    VE  D+E      R+ W
Sbjct: 165 R-TPRGWLLKSENRDFSDIVVEGPDLETFRVYGRVRW 200


>gi|19549021|ref|NP_599066.1| repressor [Enterobacteria phage SfV]
 gi|260856753|ref|YP_003230644.1| putative phage repressor protein [Escherichia coli O26:H11 str.
           11368]
 gi|19483765|gb|AAL89436.1| repressor [Enterobacteria phage SfV]
 gi|257755402|dbj|BAI26904.1| putative phage repressor protein [Escherichia coli O26:H11 str.
           11368]
 gi|323155025|gb|EFZ41215.1| peptidase S24-like family protein [Escherichia coli EPECa14]
          Length = 224

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H        ++ +      S  A     +PT  ++    G            I K
Sbjct: 1   MKTV-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58

Query: 61  ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      +      +         K+I L+        G +          ++ V 
Sbjct: 59  CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178
           +      +             +    SM+  YR GD++ ++  +    GD ++     TG
Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           +   K LI    +   L +LN  +P   ++++ +   I  ++
Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212


>gi|78046779|ref|YP_362954.1| LexA repressor [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035209|emb|CAJ22854.1| LexA repressor [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 201

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M S   ++  +   +     +  ++PS   +A+  G          R   +   +  +  
Sbjct: 1   MPSLPPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALADA 52

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++L                 G         +P+L    +G          P G    
Sbjct: 53  GLIELLPN-------QKRGIRVPGGAGRDALLALPVLGRVAAG---------LPIGA--- 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +G+         +++++      + Q  SM+      GD++ ++ + +   G  ++ + 
Sbjct: 94  DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G+I  K L       I L+  N  +    V   
Sbjct: 153 D-GEITIKRLER-GAERIRLLPRNRAHAPIVVAAD 185


>gi|59801958|ref|YP_208670.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae FA 1090]
 gi|240014865|ref|ZP_04721778.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae DGI18]
 gi|240017310|ref|ZP_04723850.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae FA6140]
 gi|240081048|ref|ZP_04725591.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae FA19]
 gi|240113258|ref|ZP_04727748.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae MS11]
 gi|240115331|ref|ZP_04729393.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae PID18]
 gi|240118675|ref|ZP_04732737.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae PID1]
 gi|240121954|ref|ZP_04734916.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae PID24-1]
 gi|240124219|ref|ZP_04737175.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae PID332]
 gi|240128889|ref|ZP_04741550.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae SK-93-1035]
 gi|260440172|ref|ZP_05793988.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae DGI2]
 gi|268597160|ref|ZP_06131327.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268599338|ref|ZP_06133505.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268601016|ref|ZP_06135183.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268604387|ref|ZP_06138554.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268682845|ref|ZP_06149707.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|268687271|ref|ZP_06154133.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291043464|ref|ZP_06569180.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398766|ref|ZP_06642935.1| phage repressor protein [Neisseria gonorrhoeae F62]
 gi|59718853|gb|AAW90258.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae FA 1090]
 gi|268550948|gb|EEZ45967.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268583469|gb|EEZ48145.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268585147|gb|EEZ49823.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268588518|gb|EEZ53194.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268623129|gb|EEZ55529.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|268627555|gb|EEZ59955.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291011927|gb|EFE03916.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610823|gb|EFF39929.1| phage repressor protein [Neisseria gonorrhoeae F62]
          Length = 251

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 17/218 (7%)

Query: 18  ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
           E   LT   LA   G+  ++ N              S     KIL          L    
Sbjct: 26  EELKLTQYKLAEAVGVTQSAVNHYLNGTNALNASIAS--QFAKILQIPVSDFSLRLAEEI 83

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPEIR----SPHNGIY 131
           S        +K + L       +             G+       P++      P++ ++
Sbjct: 84  SSMSIGIDGDKLLALQADNLDTNTITLNLYDVSASCGHGVVNPDYPQLLRSIEIPNDALF 143

Query: 132 AIQTQDTRHKT-----QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +   +             SM P   +  I ++ + +       + +    G    K L 
Sbjct: 144 ELLGTNNLTNVQLMPPDGDSMEPTIPQKSITLIKTDVSKFQTGGIYLFTFDGYTYIKRLS 203

Query: 187 SRRGRSIDLMSLNCCYP--VDTVEMSDIE--WIARILW 220
             +G +I   S N  Y      +   + +   I    W
Sbjct: 204 RGKGGAIHATSDNRHYAKSDFLINPEEADKFHIHGKFW 241


>gi|309776822|ref|ZP_07671796.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915570|gb|EFP61336.1| LexA repressor [Erysipelotrichaceae bacterium 3_1_53]
          Length = 194

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 37/218 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +     R NL+   +   AG+  ++  + +           S   + K+      
Sbjct: 2   KLSELLTYYRHRDNLSLESVGDYAGVSKSTVKRWESGESS----NVSQARLDKLSELFGI 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +                +    P+L +  +G   F +  +      +  V         
Sbjct: 58  DV------------NACLQGNVKPILGYVKAGYDLFANENLL----GYEEV--------- 92

Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            G  A Q      + Q  SM       GD++ + S   V  G   ++     ++  K ++
Sbjct: 93  TGKEAAQGDYY-LRVQGDSMTGSRIYDGDLVYVKSCSDVESGAIAVVLLEYNEVTIKKIL 151

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219
            +   ++ LM+ N           +IE      I ++L
Sbjct: 152 KKEN-TVILMATNPTVEPRVFTRQEIEEGQMQIIGKVL 188


>gi|291513608|emb|CBK62818.1| Predicted transcriptional regulator [Alistipes shahii WAL 8301]
          Length = 223

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 15/217 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI--EGRNRWPSTESIFKILAATNET 68
           E +  + ++  +T   LA++ G+   + +  +        RNR    + +          
Sbjct: 3   ERVKLIRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDWLETG 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              + +          + +  +PL   P     G        T     +  V  I  P+ 
Sbjct: 63  KGNMFNAEPDLTAYMHRTDNSLPLQSVPLYSIEGTAGLVPLFTDQA-QSKPVNFIHIPN- 120

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGD---IVA 182
               +   D        SM PL + GDI++      +N    GD  L+         +  
Sbjct: 121 ----LPKCDGAIYIVGDSMYPLLKSGDIVLYKQLRDINDIFWGDMYLLSIDIDGEEYVTV 176

Query: 183 KVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           K +    R   + L+S N  +    VE+S I  IA +
Sbjct: 177 KYIQKSDRAGYVKLVSQNQHHADKDVEISRIRAIALV 213


>gi|85060119|ref|YP_455821.1| LexA repressor [Sodalis glossinidius str. 'morsitans']
 gi|123752583|sp|Q2NR09|LEXA_SODGM RecName: Full=LexA repressor
 gi|84780639|dbj|BAE75416.1| lexA repressor [Sodalis glossinidius str. 'morsitans']
          Length = 202

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   K++++ I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTTRQKEVFDLIRDHITQTGMPPTRAEIASRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGAIEIVSGASRGIRLMIEEESGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++       G  ++ + 
Sbjct: 90  ATQHIESHYQVDPALFKPHADFLLRVSGMSMKDIGIMDGDLLAVHKTQDACNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D+  K L  + G  ++L+  N  +    V++  
Sbjct: 150 D-DDVTVKRLKRQ-GNIVELLPENSEFDPIVVDLRQ 183


>gi|329296557|ref|ZP_08253893.1| LexA repressor [Plautia stali symbiont]
          Length = 204

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 38/217 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   ++I++ I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTSRQQQIYDLIRDHINQTGMPPTRAEIASQLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                             L      S G    G    G   
Sbjct: 44  EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEASEGLPLIGRVAAGEPL 90

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +      + D   +    SM  +    GD+L ++   +V  G  ++ +
Sbjct: 91  LAQEHIEAHYQVDANLFKPSADFLLRVSGMSMTDIGIMDGDLLAVHKTQEVRNGQVVVAR 150

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               ++  K    +    + L+  N  +    V+  +
Sbjct: 151 ID-DEVTVKRWKKQGA-IVQLLPENNDFQPIVVDTRE 185


>gi|260596932|ref|YP_003209503.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
 gi|260216109|emb|CBA28883.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
          Length = 118

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +     ++        ++       +  SM      GD++ ++  + V  GD + +    
Sbjct: 4   IEYVPDQARVIFGNRPESSVKLINVRGDSMEGTIEPGDLIFVDVGVSVFDGDGIYVFNFN 63

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWA-SQ 223
           GD+  K L   + + I  +S N  Y   T+   ++       R++ + SQ
Sbjct: 64  GDMFVKRLQKVKSQLIV-ISDNPRYREWTISEEEMHMFHVAGRVMLSQSQ 112


>gi|239906993|ref|YP_002953734.1| hypothetical protein DMR_23570 [Desulfovibrio magneticus RS-1]
 gi|239796859|dbj|BAH75848.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 234

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 6/218 (2%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           EA DR+ +   + T   +A+   +  +S + +KR      +       I+ +        
Sbjct: 16  EAFDRIKKATGMRTQVEIAKMLDIRQSSISDAKRRQSIPDSWLIKLYQIYNLNPNWILDG 75

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                L    G     KE        P       +                P        
Sbjct: 76  EMPQFLGEQRGGAFPVKEPVEAYGRKPKHHQMPVYSMTPDNVDQPGLWQERPVEFLSVPD 135

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLIS 187
                      +  ++ M P+ ++G  + ++   +      L       + +   KVL  
Sbjct: 136 QLHRPG-LLVVRMDESDMEPVIQRGAYVGIDRDRKAVRSGMLYALDMPVEGLIIKKVLHD 194

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
                + L S N  +    +   +     + R++W  Q
Sbjct: 195 AENARLVLRSENTKFTDQLLPAENAADRVVGRVVWVMQ 232


>gi|258440880|ref|ZP_05690715.1| phage repressor protein [Staphylococcus aureus A8115]
 gi|282894660|ref|ZP_06302887.1| phage repressor [Staphylococcus aureus A8117]
 gi|257852394|gb|EEV76315.1| phage repressor protein [Staphylococcus aureus A8115]
 gi|282762937|gb|EFC03070.1| phage repressor [Staphylococcus aureus A8117]
 gi|319894709|gb|ADV76520.1| phage repressor protein [Staphylococcus phage TEM126]
          Length = 212

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 73/216 (33%), Gaps = 26/216 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  +   + L+   +ARK  +   +    +    E     P    + KI +  N +   L
Sbjct: 7   IKEIRLNNRLSKVEMARKLDVSEGTIRMWESGRTE-----PRMGMVEKISSLFNVSKGYL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L             E E+P      +G+                 + VP           
Sbjct: 62  LGEIEEIVLPEFDSEIEVPYFGKVSAGNFEEVAIDN-------EKLKVPPFAFNGRK--- 111

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             ++    K    SM  +   G  +I++        +++  D L+++   G+   K +  
Sbjct: 112 -PSECIALKINGDSMNKILANGSYIIVHDYRKSCDHKLSSNDILVLR-LGGEYTVKRVRR 169

Query: 188 RRGR-SIDLMSLNCCYPVDTVEM---SDIEWIARIL 219
              +  +D +S +  +  ++ ++    +IE I +++
Sbjct: 170 TETKLHLDPVSYSDEFKTNSYDLDSIDEIEVIGKVI 205


>gi|172046707|sp|Q3SIT9|LEXA_THIDA RecName: Full=LexA repressor
          Length = 200

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 5/118 (4%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
           G    G    G+        E     +        D   K +  SM  +    GD+L ++
Sbjct: 73  GLAVVGQVAAGSPILAQENIERHVQVDTALFSPRADYLLKVRGQSMKDIGILDGDLLAVH 132

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM--SDIEWIA 216
            + +   G  ++ +    ++  K    R G ++ L+  N  +    V++   ++    
Sbjct: 133 RSAEARAGQVVVARI-GDEVTVKRFQKR-GHTVQLLPENADFEPIVVDLKRQELVIEG 188


>gi|148609423|ref|YP_001272554.1| Repressor [Phage cdtI]
 gi|194426862|ref|ZP_03059415.1| repressor protein C2 [Escherichia coli B171]
 gi|148524752|dbj|BAF63374.1| Repressor [Phage cdtI]
 gi|194415198|gb|EDX31467.1| repressor protein C2 [Escherichia coli B171]
          Length = 224

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H        ++ +      S  A     +PT  ++    G            I K
Sbjct: 1   MKTV-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58

Query: 61  ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      +      +         K+I L+        G +          ++ V 
Sbjct: 59  CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178
           +      +             +    SM+  YR GD++ ++  +    GD ++     TG
Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           +   K LI    +   L +LN  +P   ++++ +   I  ++
Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212


>gi|114326596|ref|YP_743755.1| putative prophage repressor [Nitrosomonas eutropha C91]
 gi|114309535|gb|ABI60777.1| UmuD protein. Serine peptidase. MEROPS family S24 [Nitrosomonas
           eutropha C91]
          Length = 147

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  + +  SM +     GDI++++ A++   G  ++     G+   K L    G +
Sbjct: 56  PEATFLMRIKGHSMTMAGIDDGDIVVVDKAVKPEHGKIVIACVD-GEFTCKRLYLLDGET 114

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
             L   N  Y     +   I  +  ++
Sbjct: 115 -RLQPANPDYKDIIFKDGQILEVWGVV 140


>gi|323941148|gb|EGB37334.1| peptidase S24 [Escherichia coli E482]
          Length = 108

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 10  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 69

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 70  SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 101


>gi|320191842|gb|EFW66490.1| prophage repressor [Escherichia coli O157:H7 str. EC1212]
 gi|326347828|gb|EGD71544.1| prophage repressor [Escherichia coli O157:H7 str. 1044]
          Length = 108

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 10  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 69

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 70  SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 101


>gi|265998933|ref|ZP_06111490.1| repressor protein [Brucella ceti M490/95/1]
 gi|262553669|gb|EEZ09391.1| repressor protein [Brucella ceti M490/95/1]
          Length = 153

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 55  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 114

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 115 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 146


>gi|257874654|ref|ZP_05654307.1| lambda repressor [Enterococcus casseliflavus EC10]
 gi|257808818|gb|EEV37640.1| lambda repressor [Enterococcus casseliflavus EC10]
          Length = 149

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 51  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 110

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 111 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 142


>gi|256160568|ref|ZP_05458243.1| Repressor protein CI from prophage [Brucella ceti M490/95/1]
          Length = 153

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 55  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 114

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 115 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 146


>gi|253730853|ref|ZP_04865018.1| possible heat-sensitive lambda citS857 repressor protein/VP16
           fusion protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725410|gb|EES94139.1| possible heat-sensitive lambda citS857 repressor protein/VP16
           fusion protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 150

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 52  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 111

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 112 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 143


>gi|224438775|ref|ZP_03659638.1| Repressor protein CI from prophage [Helicobacter cinaedi CCUG
           18818]
          Length = 108

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 10  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 69

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 70  SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 101


>gi|26247415|ref|NP_753455.1| repressor protein [Escherichia coli CFT073]
 gi|26107816|gb|AAN80015.1|AE016759_289 Repressor protein [Escherichia coli CFT073]
          Length = 140

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 42  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 101

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 102 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 133


>gi|9633419|ref|NP_050522.1| similar to CI repressor [Enterobacteria phage VT2-Sakai]
 gi|5881615|dbj|BAA84306.1| cI [Enterobacteria phage VT2-Sakai]
          Length = 169

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 71  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 130

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 131 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 162


>gi|18158895|pdb|1KCA|A Chain A, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain Octamer
 gi|18158896|pdb|1KCA|B Chain B, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain Octamer
 gi|18158897|pdb|1KCA|C Chain C, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain Octamer
 gi|18158898|pdb|1KCA|D Chain D, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain Octamer
 gi|18158899|pdb|1KCA|E Chain E, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain Octamer
 gi|18158900|pdb|1KCA|F Chain F, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain Octamer
 gi|18158901|pdb|1KCA|G Chain G, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain Octamer
 gi|18158902|pdb|1KCA|H Chain H, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain Octamer
          Length = 109

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 11  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 70

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 71  SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 102


>gi|323940227|gb|EGB36420.1| peptidase S24 [Escherichia coli E482]
          Length = 127

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 3/104 (2%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G         E     +        D   +    SM  +    GD+L ++    V  
Sbjct: 7   VAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRN 66

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           G  ++ +    ++  K L  + G  ++L+  N  +    V++  
Sbjct: 67  GQVVVARID-DEVTVKRLKKQ-GNKVELLPENSEFKPIVVDLRQ 108


>gi|218703074|ref|YP_002410703.1| repressor protein phage e14; e14 prophage [Escherichia coli IAI39]
 gi|218373060|emb|CAR20950.1| repressor protein phage e14; e14 prophage [Escherichia coli IAI39]
 gi|294490166|gb|ADE88922.1| peptidase, S-24 domain protein [Escherichia coli IHE3034]
          Length = 224

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 13/222 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H        ++ +      S  A     +PT  ++    G            I K
Sbjct: 1   MKTV-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58

Query: 61  ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      +      +         K+I L+        G +          ++ V 
Sbjct: 59  CFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178
           +      +             +    SM+  YR GD++ ++  +    GD ++     +G
Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDSG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           +   K LI    +   L +LN  +P   ++++ +   I  ++
Sbjct: 172 ETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 212


>gi|119510068|ref|ZP_01629208.1| SOS function regulatory protein, LexA repressor [Nodularia
           spumigena CCY9414]
 gi|119465255|gb|EAW46152.1| SOS function regulatory protein, LexA repressor [Nodularia
           spumigena CCY9414]
          Length = 200

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 50/190 (26%), Gaps = 8/190 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I+     PS   + + +   +    Q            +  E +   + 
Sbjct: 8   QQQLYDWLVEYIKIHQYSPSIRQMMEAMKLKSPAPIQSRLEHLRTKGYIDWNEGKARTIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSM-LPLYR 152
                  G    G    G         +     +  + ++  Q    +    SM   L  
Sbjct: 68  ILHPVKQGIPILGTIAAGGLIE--PFTDAIDHLDFSHVSLPPQSYGLRVAGDSMIEDLIA 125

Query: 153 KGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            GD++ L+  ++      G  +  +        K    + G  + L   N  Y    V  
Sbjct: 126 DGDLVFLHPVLEPDQLKNGTIVAARVDGYGTTLKRFYRQ-GDRVTLKPANSKYKPIEVLA 184

Query: 210 SDIEWIARIL 219
           + ++    ++
Sbjct: 185 TQVQVQGSLV 194


>gi|300779104|ref|ZP_07088962.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
 gi|300504614|gb|EFK35754.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
          Length = 258

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 21/226 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+ FS     + I  +  + N+T   LA    L  + +   +    E     P  E + +
Sbjct: 1   MSKFS-----DNIVFLRGKKNMTQQELADLLFLTRSRYVAYEYGRTE-----PPIEILLR 50

Query: 61  ILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--N 113
           I    N +I       +      +     +    +P+       +           G  N
Sbjct: 51  ISKFYNISIDLLLTVDVRKFSIDELMELPENRIVLPIKVDQDGNNQIEIIPQKASMGYLN 110

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170
            +      E     +  +    +         SM P Y+ G  ++   + +   +     
Sbjct: 111 GYGDPEYIESLETISLPFLKGGKFRAFPADGDSM-PPYKNGTYIVGKYVENLSDLKTDRT 169

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            +       I  K         I + + N  Y    + + +I+ I 
Sbjct: 170 YVFITTNDGISYKRFQFHEADGIWVKADNQFYEPYKIPLPEIKEIW 215


>gi|86158126|ref|YP_464911.1| SOS-response transcriptional repressor LexA [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|123736646|sp|Q2IIJ0|LEXA_ANADE RecName: Full=LexA repressor
 gi|85774637|gb|ABC81474.1| SOS-response transcriptional repressor, LexA [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 229

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 61/230 (26%), Gaps = 19/230 (8%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKSKRFGIEGR--NRWP 53
           M   +    ++   I    E H   P+   +     +  T+  N   +        +R P
Sbjct: 1   MEGLTDRQLEVLRFIASQIEDHGYPPTIREIGEALDIRSTNGVNDHLKALERKGYLSRDP 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
                    +A  E +    +   +         +    +   P          +     
Sbjct: 61  VKSRALIPTSAAREALGGGGEAGSNVVPLVRGPARPGSRMIEIPIVGRVAAGMPILAQER 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLL 172
             +TV V         +     +    + Q  SM+      GD + +   +  + G+ ++
Sbjct: 121 VEDTVQVDA------FLLGTNKKVYGLRVQGDSMIGDGILPGDYVFVKKQLNADDGEIVV 174

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
                 +   K +    G  +     N       V  SD      +  ++
Sbjct: 175 AMID-DEATVKRVYF-EGDRVRFQPSNPRMAPIYVRHSDFRSTMILGVVV 222


>gi|87303597|ref|ZP_01086376.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 5701]
 gi|87281821|gb|EAQ73785.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 5701]
          Length = 153

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 14/146 (9%)

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
                                 G   +  FP+    + V        +  +    +    
Sbjct: 11  FSEPFTPLPLRERRRALLLPLAGDSVAAGFPSPA-DDYVE--TGIDLNEQLIRHPSSTFF 67

Query: 140 HKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
            +    SM+      GD+LI++ +++   G R+++    G    K L+      + L + 
Sbjct: 68  LRVSGDSMIGAGIHHGDLLIVDRSVEPRHG-RVVVAAVEGAFTLKRLVRH-QGRLRLEAA 125

Query: 199 NCCYPVDTVEMSD--------IEWIA 216
           +  YP   +  +D        I  I 
Sbjct: 126 HPAYPPLELSDADDTRLWGVAIHVIH 151


>gi|270635221|ref|ZP_06222072.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
 gi|270317432|gb|EFA28935.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
          Length = 107

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                      SM P+   G  + ++   +     ++      G +  K+L +     + 
Sbjct: 16  ENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVK 75

Query: 195 LMSLN-CCYPVDTVEMSDIEWIARILWAS 222
           + S N   +P +  E+ DI  + ++ W S
Sbjct: 76  IRSYNTEEHPDEIAELQDISVLGKVFWYS 104


>gi|27383436|ref|NP_774966.1| MucA [Citrobacter freundii]
 gi|216967817|ref|YP_002333325.1| MucA [Klebsiella pneumoniae]
 gi|27261289|gb|AAN87630.1| MucA [Citrobacter freundii]
 gi|215397989|gb|ACJ65266.1| MucA [Klebsiella pneumoniae]
 gi|323700911|gb|ADY00064.1| translesion synthesis protein A [Escherichia coli]
          Length = 144

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H+            +    SM       GD+L+++ A +   G  ++      +   K L
Sbjct: 43  HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             R      LM LN  +P    +   ++    +
Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132


>gi|332360920|gb|EGJ38725.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK355]
          Length = 257

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +        L+R+ G+  ++     +         P   ++ KI       
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--------FFDSGVFPTGNKWNTVGV 120
           + ++           ++      +         G                   K +    
Sbjct: 74  VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQGKGLKLLEASLTEQETHASLKDDYFPY 133

Query: 121 ------------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
                       PE          I   D     +  S+ P Y   D + L         
Sbjct: 134 LVYENYYLSQHKPEQADLVWLDREID-YDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPTG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|124026385|ref|YP_001015500.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. NATL1A]
 gi|123961453|gb|ABM76236.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. NATL1A]
          Length = 202

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 50/192 (26%), Gaps = 8/192 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      IE  +  PS   + + +   +    Q            + +E +   L 
Sbjct: 10  QQELYDWLVDFIEDHHHSPSIRQMMQAMGLRSPAPIQSRLRHLQQKGWIKWQEGQARTLQ 69

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G    T    +     N +  ++           SM+      
Sbjct: 70  LIEESISGVPVLGAIAAGGLVETFDDVQETLDLNSVLQLKG-LFALTVNGDSMIDSFIAD 128

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++++    +      G  +           K      G  + L + N  Y    ++  
Sbjct: 129 GDMVLMEPVNEPARLRNGTIVSAMVPGLGTTLKHFFRD-GSLVRLEAANTSYDPIEIDAE 187

Query: 211 DIEWIARI--LW 220
            +    ++  +W
Sbjct: 188 QVHIQGKLAAVW 199


>gi|315633588|ref|ZP_07888878.1| LexA repressor [Aggregatibacter segnis ATCC 33393]
 gi|315477630|gb|EFU68372.1| LexA repressor [Aggregatibacter segnis ATCC 33393]
          Length = 207

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 35/224 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   +++++ +    E   + P+    +A +        +             +++
Sbjct: 1   MKPLTARQQEVYDFLKHHLETTGMPPT----RAEISK------ELGFRSPNAAEEHLKAL 50

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K                      +        LL        G    G    G      
Sbjct: 51  AK---------------KGVIEIVSGTSRGIRLLLEDNGQEEPGLPLIGRVAAGEPILAE 95

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E     +        D   K    SM  +    GD+L ++S   V  G  ++ +   
Sbjct: 96  QHIEGTYHVDPTMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQVVVARI-E 154

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216
            ++  K L  + G ++ L + N  +    V+++     +IE IA
Sbjct: 155 DEVTVKRLERK-GSTVYLHAENEEFAPIVVDLTQPTQFEIEGIA 197


>gi|238854759|ref|ZP_04645089.1| repressor LexA [Lactobacillus jensenii 269-3]
 gi|260663991|ref|ZP_05864844.1| LexA repressor [Lactobacillus jensenii SJ-7A-US]
 gi|282932850|ref|ZP_06338247.1| repressor LexA [Lactobacillus jensenii 208-1]
 gi|313472279|ref|ZP_07812771.1| repressor LexA [Lactobacillus jensenii 1153]
 gi|238832549|gb|EEQ24856.1| repressor LexA [Lactobacillus jensenii 269-3]
 gi|260561877|gb|EEX27846.1| LexA repressor [Lactobacillus jensenii SJ-7A-US]
 gi|281302885|gb|EFA95090.1| repressor LexA [Lactobacillus jensenii 208-1]
 gi|313449108|gb|EFR61341.1| repressor LexA [Lactobacillus jensenii 1153]
          Length = 211

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 62/217 (28%), Gaps = 27/217 (12%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           KI E I    E     P+   +     L  TS                    + +++   
Sbjct: 11  KILEFIYDTVEDRGFPPTVREICEAVNLSSTSTVH---------------GHLNRLVKTG 55

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                          +         P + +  + + G  D+ +         V  PE   
Sbjct: 56  YLYKDPSKPRALEITQEGLNALGVDPGIPYLGTVAAGDPDTALADDSGAEYYVERPERFD 115

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
             + +Y         +    SM        D++I+        GD ++          K 
Sbjct: 116 KRDPLY-------MLRVDGMSMIERGIYPDDLVIVRHQNVAAQGDLVIAYTENNGTTLKE 168

Query: 185 LISR-RGRSIDLMSLNCC-YPVDTVEMSDIEWIARIL 219
           L+   + + + L + N   YP + +  ++ +   +++
Sbjct: 169 LVRDHKSKRLRLKAYNKEMYPDELLPDTNFKICGKVV 205


>gi|313115948|ref|ZP_07801375.1| peptidase S24-like domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621712|gb|EFQ05240.1| peptidase S24-like domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 275

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 58/253 (22%), Gaps = 46/253 (18%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARK-----AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            ++ + +    +R+  +    +         +     +K ++         PS   +  I
Sbjct: 28  NEVGQILAGTRKRNGYSLVAFSELLRHYGVDVSDKGISKWEKGYTT-----PSIYQLVAI 82

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             A N                      +  +  +                  + + + +P
Sbjct: 83  CHALNIKEGPSYFTKAFQKPALLNDIGQKKVAEYEMDLIASRRYQPDTEEPAEIDYIMMP 142

Query: 122 EIRSPHNGIYAIQ------------------TQDTRHKTQDTSMLPLYRKGDILILNSAI 163
               P +                          +        SM P Y  G I+ +    
Sbjct: 143 VSELPVSAGLGAFLEGEMFQQIQVPASSVPAGAEFGIYVSGDSMEPRYHSGQIVWVKRCE 202

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRS----------------IDLMSLNCCYPVDTV 207
           ++ CGD  +          K                           L+SLN  Y    +
Sbjct: 203 ELECGDIGIFVYDDCG-YLKKYDEHTPDKSQAEFLTDSYGVVHNQPVLVSLNTKYSPILI 261

Query: 208 EMSD-IEWIARIL 219
                 E + ++L
Sbjct: 262 SPEQRFEIVGKVL 274


>gi|254496193|ref|ZP_05109088.1| phage repressor [Legionella drancourtii LLAP12]
 gi|254354585|gb|EET13225.1| phage repressor [Legionella drancourtii LLAP12]
          Length = 220

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 14/222 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               ++I   I +  +   +T   LA +   L P   +  ++       R P       +
Sbjct: 1   MDIREQIGNRITKARKELGITIKELAARTVTLSPARISNWEQCT-----RSPGPLEAKLL 55

Query: 62  LAATNETICQLLDLPFSDGRT--TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                 +   LL L  +         + K   +       +    +         +    
Sbjct: 56  AEQLGVSASYLLCLTDNPQGDLIQNPENKFRHIPILNTKEALHAREILGQQEPFIFEKTI 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTG 178
           + +  +P     A+          D+SM P    GD+++++  +Q N G  + +   +  
Sbjct: 116 LVDSLNPSIKSLAL----FATSVDDSSMQPELTPGDVVVIDGDLQPNPGHYVLVYLTQKK 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
             V +      G    L++ +  +   ++ +  + + I  ++
Sbjct: 172 QTVLRRYGEADGYHFQLLASSDLWATVSIKDAQEAQIIGVVV 213


>gi|325579221|ref|ZP_08149177.1| LexA repressor [Haemophilus parainfluenzae ATCC 33392]
 gi|325159456|gb|EGC71590.1| LexA repressor [Haemophilus parainfluenzae ATCC 33392]
          Length = 208

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 62/216 (28%), Gaps = 33/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ E + R  E   + P  + ++R+ G        +    ++   R  + E
Sbjct: 1   MRPLTARQQEVLELLKRHLETTGMPPTRAEISRELGFKSP---NAAEEHLKALARKGAIE 57

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +                           +   I           G    G    G    
Sbjct: 58  IVA-----------------------GASRGIRIVDDSANDEEEEGLPLIGRVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K    SM  +    GD+L ++S   V  G  ++ + 
Sbjct: 95  AEQHIEGTYRVDANMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQIVVARI 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  I L + N  +    V + +
Sbjct: 155 -EDEVTVKRLERK-GSVIYLHAENEEFQPIVVNLEE 188


>gi|303246530|ref|ZP_07332809.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
           fructosovorans JJ]
 gi|302492240|gb|EFL52115.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
           fructosovorans JJ]
          Length = 140

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +   +    +  +          +    SM       GDIL+++ A++   G  ++
Sbjct: 31  AEDYID--KKLDLNEQLVRHPAATFFVRVDGDSMRDAGVASGDILVVDRAVEPRDGHIVI 88

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  +    + L+  N  Y    V       +  ++
Sbjct: 89  AALD-GELTVKRLRRK-NGQVLLVPENPDYAPVAVGPEASFEVWGVV 133


>gi|238801225|gb|ACR56332.1| MucA [Enterobacter cloacae]
          Length = 136

 Score = 71.3 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H+            +    SM       GD+L+++ A +   G  ++      +   K L
Sbjct: 43  HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             R      LM LN  +P    +   ++    +
Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132


>gi|255022991|ref|ZP_05294977.1| LexA repressor [Listeria monocytogenes FSL J1-208]
          Length = 166

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 54/186 (29%), Gaps = 32/186 (17%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFK 60
            + I+E I    +     PS   +    GL  +S        +EG+    R P+     +
Sbjct: 7   QQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTKPRAIE 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL                    + + E E P +   P          +    N      +
Sbjct: 67  IL--------------------SLEDEAETPNVVNIPIIGKVTAGMPITAIENIDEYFPL 106

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE  +      A +T     +    SM+      GD +I+        G+ ++      +
Sbjct: 107 PEYMA------AGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE 160

Query: 180 IVAKVL 185
              K  
Sbjct: 161 ATCKRF 166


>gi|78185048|ref|YP_377483.1| peptidase S24, LexA repressor [Synechococcus sp. CC9902]
 gi|78169342|gb|ABB26439.1| Peptidase S24, LexA repressor [Synechococcus sp. CC9902]
          Length = 207

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 8/191 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
                      I      PS   + +   L +      +L  L      T ++ +     
Sbjct: 13  QQELYDWLSDYIGTHRHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 72

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151
           L    + S G    G    G   +T    +       +   +           SM+    
Sbjct: 73  LLGDVAASVGIPVLGAVAAGGLVDTFDDVQDHLDLAPVLETRG-LFALTVNGDSMVDAHI 131

Query: 152 RKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
             GD++++   +       G  +           K    +   ++ L + N  Y    + 
Sbjct: 132 ADGDVVLMEPVVDPQRLRDGTVVSALVAGSGTTLKHFHRQGP-TVVLEAANPAYSPIELP 190

Query: 209 MSDIEWIARIL 219
              ++   +++
Sbjct: 191 AEQVQVQGKLV 201


>gi|284006472|emb|CBA71732.1| LexA repressor [Arsenophonus nasoniae]
          Length = 213

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
             +   G    G    G         E     +      + D   +    SM  +    G
Sbjct: 80  EENEDEGLPLIGRVAAGEPLLAQEHIESHYRIDATIFRPSADFLLRVNGMSMKNIGIIDG 139

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           D+L ++   QV+ G  ++ +    ++  K    + G  ++L++ N  +    V++
Sbjct: 140 DLLAVHKTQQVHNGQIVVARID-DEVTVKRF-KQAGSKVELIAENPEFEPIIVDL 192


>gi|254284026|ref|ZP_04958994.1| LexA repressor [gamma proteobacterium NOR51-B]
 gi|219680229|gb|EED36578.1| LexA repressor [gamma proteobacterium NOR51-B]
          Length = 197

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 4/176 (2%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  IE     P+   I +I+   +    +      +     E        + 
Sbjct: 7   QQQVLDIIRSNIEDTGFPPTRADIAQIMGFKSANAAEEHLKALAKKGAIEMIPGTSRGIR 66

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
               G  G    G    G         E      G +   + D     Q  SM+ +    
Sbjct: 67  LT--GQKGIPIVGRVAAGEPVLAQEHVEEHCELPGSFFSPSADYLLNVQGDSMVDVGIYD 124

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           GD+L ++S         ++ +    ++  K       + + L+  N  Y    V +
Sbjct: 125 GDLLAVHSTPVAADNQIVVARID-DEVTVKRFKRTSKQIVTLLPENSLYQPIVVNL 179


>gi|204931364|ref|ZP_03222063.1| protein UmuD [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204319847|gb|EDZ05056.1| protein UmuD [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 139

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            +  +   L    P     +     FP+    + +   +    +  + +  +     K  
Sbjct: 1   MEFFRPTELCEIIPLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAT 57

Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM       GD+L+++S+   + GD ++     G+   K L  R   ++ L+ +N  Y
Sbjct: 58  GDSMIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRLQLRP--TVQLIPMNSAY 114

Query: 203 PVDTVEMSD-IEWIARI 218
               V   D ++    +
Sbjct: 115 RPIPVGSEDTLDIFGVV 131


>gi|260583118|ref|ZP_05850899.1| conserved hypothetical protein [Haemophilus influenzae NT127]
 gi|260093830|gb|EEW77737.1| conserved hypothetical protein [Haemophilus influenzae NT127]
          Length = 256

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 70/257 (27%), Gaps = 49/257 (19%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+       E + R     NLT + LA   G    + +   +   + + R     +I +
Sbjct: 1   MTTL-----AERLKRTLLERNLTQNDLAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49

Query: 61  ILAATNETICQLLDLPFSDGRTTEKK---------------------------EKEIPLL 93
           I  A       L +        +  +                            K+   L
Sbjct: 50  IANALGVDPNWLRNGGDMIVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLHKQQVSL 109

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQD 144
              P+    F                 P      +                        +
Sbjct: 110 KTKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFN 169

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-P 203
            SM P+  K D++ +++  +   G+ + +     ++  + L       ++ ++ N     
Sbjct: 170 ESMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGS 229

Query: 204 VDTV-EMSDIEWIARIL 219
              + ++S +  + R +
Sbjct: 230 SFEIDDLSRLNVLGRCV 246


>gi|218133889|ref|ZP_03462693.1| hypothetical protein BACPEC_01778 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991264|gb|EEC57270.1| hypothetical protein BACPEC_01778 [Bacteroides pectinophilus ATCC
           43243]
          Length = 199

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 37/213 (17%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +I + I+    ++  +PS   +A   G+   +  K                 + ++    
Sbjct: 11  EIKKYIEDYYLQNRQSPSTTKIAEAVGIARGTAYKY----------------LVEMAEKN 54

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                          + + ++ +   +             S  +   N    V +P    
Sbjct: 55  MIEYDGQEIRTNVTRKYSGEQTQTPIV-------GSIPCGSPQYEEENIEEYVSLPTAIF 107

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                   +      +    SM       GD++++   ++ N GD ++          K 
Sbjct: 108 G-------KGDFFILRASGQSMIEAGIDDGDLVVVKKQVEANDGDIVVALVD-NQNTLKR 159

Query: 185 LIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                  + I L   N       V   +     
Sbjct: 160 YFRDDENKKIILHPENKKMKDIIV--DECCIQG 190


>gi|256855230|ref|ZP_05560588.1| temperature-sensitive lambda-repressor [Enterococcus faecalis T8]
 gi|256709444|gb|EEU24494.1| temperature-sensitive lambda-repressor [Enterococcus faecalis T8]
          Length = 169

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 71  DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 130

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 131 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 162


>gi|153821431|ref|ZP_01974098.1| protein UmuD [Vibrio cholerae B33]
 gi|229509132|ref|ZP_04398619.1| error-prone repair protein UmuD [Vibrio cholerae B33]
 gi|229608804|ref|YP_002879452.1| error-prone repair protein UmuD [Vibrio cholerae MJ-1236]
 gi|254850921|ref|ZP_05240271.1| SOS mutagenesis and repair protein UmuD [Vibrio cholerae MO10]
 gi|255743722|ref|ZP_05417680.1| error-prone repair protein UmuD [Vibrio cholera CIRS 101]
 gi|17017486|gb|AAK64594.1| RumA [Vibrio cholerae MO10]
 gi|21885340|gb|AAL59746.1| UV repair [Vibrio cholerae]
 gi|32469330|dbj|BAC79073.1| UV repair [Vibrio cholerae]
 gi|126521031|gb|EAZ78254.1| protein UmuD [Vibrio cholerae B33]
 gi|194687002|dbj|BAG66137.1| UV repair protein, RumA [Vibrio cholerae O1 biovar El tor]
 gi|229353889|gb|EEO18824.1| error-prone repair protein UmuD [Vibrio cholerae B33]
 gi|229371459|gb|ACQ61882.1| error-prone repair protein UmuD [Vibrio cholerae MJ-1236]
 gi|238815147|gb|ACR56736.1| UV repair protein [Escherichia coli]
 gi|254846626|gb|EET25040.1| SOS mutagenesis and repair protein UmuD [Vibrio cholerae MO10]
 gi|255738583|gb|EET93970.1| error-prone repair protein UmuD [Vibrio cholera CIRS 101]
 gi|259156259|gb|ACV96206.1| protein UmuD [Vibrio cholerae Ban5]
 gi|259156355|gb|ACV96301.1| protein UmuD [Vibrio cholerae Ind4]
 gi|259156441|gb|ACV96386.1| protein UmuD [Vibrio cholerae Ind5]
 gi|259156578|gb|ACV96521.1| protein UmuD [Vibrio fluvialis Ind1]
 gi|270124431|dbj|BAI52787.1| RumA, UV repair DNA polymerase [Vibrio cholerae O1 biovar El Tor]
          Length = 149

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             + +  SM+       DIL+++ ++Q   GD ++  
Sbjct: 39  DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G++  K L  R    + L+  N  Y    +   +++E    +
Sbjct: 96  GIHGELTVKELQLRP--CVKLIPRNQAYEPIHIPEGAELEIFGVV 138


>gi|170752098|ref|YP_001758358.1| XRE family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658620|gb|ACB27675.1| transcriptional regulator, XRE family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 239

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 65/217 (29%), Gaps = 17/217 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             A+ +  ER  LT   LA  AG       + +        R  + E   ++  A     
Sbjct: 1   MSALKQFRERARLTQQELADAAGTSQPQIRRLEAGE-----RKLTKEWAERLAPALGINA 55

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LL  P +             +         G   +G F T +      + E       
Sbjct: 56  ETLLFPPANLNEPEGDDGPGWTIDGEAGLDVPGEVAAGRFLTVDTAVDETIYERAPVVPD 115

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILIL----NSAIQVNCGDRLLIKPRTG-----DI 180
               +        + TS+  +   GDIL       S  Q   GD ++++         + 
Sbjct: 116 SRYPRKAQYGLVVRGTSINQIAIDGDILHCVDIGISGHQPQNGDLVIVEQIQFGGHLRER 175

Query: 181 VAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEW 214
            AKV     G S++L   +          V   ++EW
Sbjct: 176 TAKVYRVAEGGSVELHPDSDDPRWQEPIHVPRRELEW 212


>gi|9955121|pdb|1F39|A Chain A, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain
 gi|9955122|pdb|1F39|B Chain B, Crystal Structure Of The Lambda Repressor C-Terminal
           Domain
          Length = 101

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM       P +  G +++++    V  GD  + +    +   K LI  
Sbjct: 3   ASAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 62

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 63  SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 94


>gi|301155562|emb|CBW15030.1| DNA-binding transcriptional repressor of SOS regulon [Haemophilus
           parainfluenzae T3T1]
          Length = 208

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 33/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ E + R  E   + P  + ++R+ G        +    ++   R  + E
Sbjct: 1   MRPLTARQQEVLELLKRHLETTGMPPTRAEISRELGFKSP---NAAEEHLKALARKGAIE 57

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +               D                           G    G    G    
Sbjct: 58  IVAGASRGIRIIDDSANDEEEE-----------------------GLPLIGRVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K    SM  +    GD+L ++S   V  G  ++ + 
Sbjct: 95  AEQHIEGTYRVDANMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQIVVARI 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  I L + N  +    V + +
Sbjct: 155 -EDEVTVKRLERK-GSVIYLHAENEEFQPIVVNLEE 188


>gi|323181266|gb|EFZ66764.1| peptidase S24-like family protein [Escherichia coli 1357]
          Length = 212

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 21/211 (9%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S + I E I +     NL    L    G    S ++    G    +R+ S  S+ KIL 
Sbjct: 1   MSKQTISERITQRMHALNLKGKDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILK 58

Query: 64  AT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              N  +             +    K +PLL    + S               + +    
Sbjct: 59  VNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSS 105

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRT 177
           I S    +  I         +  SM           G  + ++    V  G+ +L  P+ 
Sbjct: 106 ITSCVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKG 165

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                   +   G  I L+  N  YP   ++
Sbjct: 166 TTTPVIRNLEIEGPDILLVPTNPRYPSIMLD 196


>gi|213970585|ref|ZP_03398712.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv.
           tomato T1]
 gi|213924756|gb|EEB58324.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv.
           tomato T1]
          Length = 218

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 4/193 (2%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            S LA   G      ++      +   +    +   ++  A +     L  L   D + +
Sbjct: 13  QSRLAEMLGKPQNLLSRYLSSPEKAGAKTIGEDFAREVEKAFDLPRYALDILEAPDDQVS 72

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
                E+      P+       +        W  +   +         +        + +
Sbjct: 73  ASNNFEVGPPITSPTRRIAIVGTAQLGPDGYWAGLDTTDGWVETW---SRDEDAYALRLK 129

Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
             SM P  R G + +   + ++  G+ +++K   G  + K L+      + LMS+N  Y 
Sbjct: 130 GDSMAPAIRSGWVAVCEPSHRLVPGEYVMVKLCDGQSMVKELLFETEDGVSLMSVNSAYG 189

Query: 204 VD-TVEMSDIEWI 215
              T+  SDIE I
Sbjct: 190 ERTTLSWSDIERI 202


>gi|77543205|gb|ABA87017.1| RumA [Vibrio cholerae]
 gi|259156489|gb|ACV96433.1| protein UmuD [Vibrio cholerae Mex1]
          Length = 149

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             + +  SM+       DIL+++ ++Q   GD ++  
Sbjct: 39  DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G++  K L  R    + L+  N  Y    +   +++E    +
Sbjct: 96  GIHGELTVKELQLRP--CVMLIPRNQAYEPIHIPEGTELEIFGVV 138


>gi|33865578|ref|NP_897137.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 8102]
 gi|33632747|emb|CAE07559.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. WH 8102]
          Length = 143

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V V      ++ +    T     +    SML      GD+L+++ ++    G  ++
Sbjct: 34  ADDYVEV--GIDLNDQLIRHPTSTFFLRVSGESMLGAGIHDGDLLVVDRSLDPRPGRVVV 91

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G+   K L+ +    + L + N  YP   +    D++ 
Sbjct: 92  AVLD-GEFTLKRLV-QHHGRLRLEAANPAYPPLELHRCGDVQI 132


>gi|302188082|ref|ZP_07264755.1| putative UV resistance protein [Pseudomonas syringae pv. syringae
           642]
          Length = 143

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +    P        + A        +T+  SM P     G  L+++ A     G+ ++  
Sbjct: 35  DHYEAPISLDDLVDLRA--PHVWLGETEGDSMSPAGILNGTKLVIDRARTPQVGNVVVAY 92

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
                 V K L  +      L S N  YP     + +IE    + W+
Sbjct: 93  ID-NQPVVKRLDRQLNGGWMLSSDNPKYPPIQ-GLEEIEVFGVVTWS 137


>gi|255010704|ref|ZP_05282830.1| hypothetical protein Bfra3_16308 [Bacteroides fragilis 3_1_12]
 gi|313148511|ref|ZP_07810704.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313137278|gb|EFR54638.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 228

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 63/221 (28%), Gaps = 8/221 (3%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + ++   I  + ER    PS  A+  G     +              +   +       
Sbjct: 4   KNTEVSARIAAIIERVGENPSSFAKSLGYSRAQTIYDILSGKSA--PSYDFFKRFANTGF 61

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPE 122
           + N  +  L        +  E    E P+         G          G       V E
Sbjct: 62  SANINLQWLFTGNGDMFKKEEAIADERPVASLATQPGKGIPLIPIEAMAGALTGEQTVLE 121

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGD 179
                  +   +  D     + +SM P Y  GDI+       +      +++ +      
Sbjct: 122 YECERYVVPVFKGADFLIPVKGSSMYPKYSSGDIVACQRVPMSDLFFQWNKVYVIDTNQG 181

Query: 180 IVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            + K +        + ++S N  Y    + +S I  +A ++
Sbjct: 182 ALIKRIKPGSDKEHVLIVSDNEKYDPFELPISSIHAVALVI 222


>gi|218282466|ref|ZP_03488725.1| hypothetical protein EUBIFOR_01307 [Eubacterium biforme DSM 3989]
 gi|218216562|gb|EEC90100.1| hypothetical protein EUBIFOR_01307 [Eubacterium biforme DSM 3989]
          Length = 196

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 71/209 (33%), Gaps = 36/209 (17%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
            +N+     A++ G+   ++ +  +             ++ K+    +  +         
Sbjct: 13  ENNIKHDEAAKRIGIGRATYFRWLKGEST----HLKANTLKKLSDMLDCDVK-------- 60

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
                +++++  P++    +G  G      FP  +    + +          +       
Sbjct: 61  --SILDEEDRIKPIVGSVKAGYDG------FPMEDIEGYIELNRHDGKKGDYF------- 105

Query: 139 RHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
             + +  SM+     +GD++ +    +V  G   ++     +   K ++ ++G  I L +
Sbjct: 106 -LRVRGDSMINAHIYEGDLVFVKQTNEVESGSIAIVL-VGEEATLKRVLYKKGLMI-LEA 162

Query: 198 LNCCYPVDTVEMSDIE-----WIARILWA 221
            N           ++E      I ++L+A
Sbjct: 163 ANPKIDTKVFTPEEVEELPVKVIGKVLYA 191


>gi|219882924|ref|YP_002478088.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
           A6]
 gi|219861930|gb|ACL42271.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 143

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                +    SM       GD L+++ AI    G+ ++     G++  K L       + 
Sbjct: 54  STFLVRVSGHSMEGAGISDGDELVVDRAITPVDGNVVVAIVD-GELTIKRL-RLEHGRVR 111

Query: 195 LMSLNCCYPVDTVE-MSDIEWIARI 218
           L + N  YP   V  ++++     +
Sbjct: 112 LAAENPDYPDLVVPELAELSIWGTV 136


>gi|238764118|ref|ZP_04625072.1| LexA repressor [Yersinia kristensenii ATCC 33638]
 gi|238798487|ref|ZP_04641966.1| LexA repressor [Yersinia mollaretii ATCC 43969]
 gi|238697655|gb|EEP90418.1| LexA repressor [Yersinia kristensenii ATCC 33638]
 gi|238717649|gb|EEQ09486.1| LexA repressor [Yersinia mollaretii ATCC 43969]
          Length = 202

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ +     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEDGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 183


>gi|123444033|ref|YP_001008003.1| LexA repressor [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|238760283|ref|ZP_04621426.1| LexA repressor [Yersinia aldovae ATCC 35236]
 gi|238782916|ref|ZP_04626944.1| LexA repressor [Yersinia bercovieri ATCC 43970]
 gi|332163195|ref|YP_004299772.1| LexA repressor [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|166224656|sp|A1JRT9|LEXA_YERE8 RecName: Full=LexA repressor
 gi|122090994|emb|CAL13877.1| LexA repressor [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|238701485|gb|EEP94059.1| LexA repressor [Yersinia aldovae ATCC 35236]
 gi|238716119|gb|EEQ08103.1| LexA repressor [Yersinia bercovieri ATCC 43970]
 gi|318603920|emb|CBY25418.1| SOS-response repressor and protease LexA [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667425|gb|ADZ44069.1| LexA repressor [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 202

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ +     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEDGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 183


>gi|319946970|ref|ZP_08021204.1| phage transcriptional repressor [Streptococcus australis ATCC
           700641]
 gi|319747018|gb|EFV99277.1| phage transcriptional repressor [Streptococcus australis ATCC
           700641]
          Length = 253

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 24/228 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  + +  N     L+R  G+  ++     +         P +E++ KI +     
Sbjct: 22  ISEKIRELLKVQNKKQVDLSRTTGIPASTLTGYVKGTS-----LPVSENLEKIASFFEIP 76

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPP--------------SGSGGFFDSGVFPTGNK 114
           I  L           + K + I                       +        +     
Sbjct: 77  ISDLDPRYGQPDTLEDSKIEFIYKQLDEDFQDSLLEEANRLLVLQAERKRIEKKYTPYTV 136

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDT--RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +++    +  S  + ++  Q             S+ P Y KG + ++        G  + 
Sbjct: 137 FDSYAASQSASKGDLVWFDQKLAYDLALWIHTDSLEPKYPKGSVALIKQTFYDTAG-AIY 195

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                G  + K +     + I L+SLN  Y    + + +    I +++
Sbjct: 196 AIEYDGQTLIKRVFR-EAQGIRLVSLNKKYSDKVIPLEEEPRVIGKVI 242


>gi|303246421|ref|ZP_07332700.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
 gi|302492131|gb|EFL52006.1| putative phage repressor [Desulfovibrio fructosovorans JJ]
          Length = 188

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             +         SM P+   GD ++++ + +      +       ++  K L+      +
Sbjct: 91  PKKMVLMDVAGDSMEPMLFDGDTVLIDESQREIIAGAIFAVGIEQEVFVKSLLRVP-GKL 149

Query: 194 DLMSLNCCYPVDTVEMS-----DIEWIARILWA 221
            L S N  Y    V+M+      +  I R++W+
Sbjct: 150 VLQSRNERYAPIEVDMNGDLAGTVRIIGRVVWS 182


>gi|269861614|ref|XP_002650506.1| DNA polymerase V subunit [Enterocytozoon bieneusi H348]
 gi|220066032|gb|EED43551.1| DNA polymerase V subunit [Enterocytozoon bieneusi H348]
          Length = 143

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +    P        + A        +T+  SM P        L+++ A     G+ ++  
Sbjct: 35  DHYEAPISLDDLVDLRA--PHVWLGETEGDSMSPAGILNATKLVIDRARTPQVGNVVVAY 92

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
                 V K L  +      L S N  YP     + +IE    + W+
Sbjct: 93  ID-NQPVVKRLDRQLNGGWMLSSDNPKYPPIQ-GLEEIEVFGVVTWS 137


>gi|120597913|ref|YP_962487.1| putative prophage repressor [Shewanella sp. W3-18-1]
 gi|120558006|gb|ABM23933.1| UmuD protein. Serine peptidase. MEROPS family S24 [Shewanella sp.
           W3-18-1]
          Length = 149

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             + +  SM+       DIL+++ ++Q   GD ++  
Sbjct: 39  DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G++  K L  R    + L+  N  Y    +   +++E    +
Sbjct: 96  GIHGELTVKELQLRP--CVKLIPRNQAYEPIHIPEGTELEIFGVV 138


>gi|271499115|ref|YP_003332140.1| LexA family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342670|gb|ACZ75435.1| transcriptional repressor, LexA family [Dickeya dadantii Ech586]
          Length = 203

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 37/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTTRQQQVYDLIRDHISQTGMPPTRAEIASQLGF-----------------RSPNAA 43

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         + L      G           +         G    G    G    
Sbjct: 44  E-------------EHLKALARKGVIEIVTGASRGIRLLMEEEDQGLPLIGRVAAGEPLL 90

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 91  AQQHIECHYQVDPAMFKPSADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARI 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L++ N  +    V++ +
Sbjct: 151 -EDEVTVKRLKKQ-GNIVQLLAENKEFSPIVVDLRE 184


>gi|38638093|ref|NP_943203.1| translesion synthesis protein [Erwinia amylovora]
 gi|37681991|gb|AAQ97878.1| MucA [Erwinia amylovora]
          Length = 144

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H+            +    SM       GD+L+++ A +   G  ++      +   K L
Sbjct: 43  HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             R      LM LN  +P    +   ++    +
Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132


>gi|307823398|ref|ZP_07653627.1| transcriptional repressor, LexA family [Methylobacter tundripaludum
           SV96]
 gi|307735383|gb|EFO06231.1| transcriptional repressor, LexA family [Methylobacter tundripaludum
           SV96]
          Length = 211

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/200 (10%), Positives = 42/200 (21%), Gaps = 14/200 (7%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
                              P+ E +   +   +            +    E  E++   +
Sbjct: 8   KQQEVFDFLLQNQNNFPHPPTLEELCAGMGLKSRGSLHNHIKALINENLVEAPERKQRGI 67

Query: 94  YFPPS---------GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
                                 G    G     V      S        Q      K + 
Sbjct: 68  RLTEYAKEMIGYSNDQSALPFVGFIAAGKPIEAVENITYMS-IPEQLKTQNPCYVLKVKG 126

Query: 145 TSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
            SM       GD +I+        G+ ++      +   K +      ++ L+  N    
Sbjct: 127 DSMLEQGIYDGDWVIIEQRCHARNGEIVVALINKAEATLKFIEQYPHETL-LIPANSTME 185

Query: 204 VDTVEMSDIEWIARILWASQ 223
                   +E     +   Q
Sbjct: 186 AMRYTPEQVEIQG--VLVGQ 203


>gi|85860762|ref|YP_462964.1| DNA polymerase V subunit [Syntrophus aciditrophicus SB]
 gi|85723853|gb|ABC78796.1| DNA polymerase V subunit [Syntrophus aciditrophicus SB]
          Length = 195

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 8/185 (4%)

Query: 36  TSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT-TEKKEKEIPLLY 94
            S  K        R R P+ E +  +L   ++++         + +   + +   +    
Sbjct: 8   PSVKKQIAGFFRERKRMPTYEEMVALLGVRSKSVVHFWINKLVEAKILEKDRGGHLAWKE 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
            P S       +  FP+        + +I S    + A        +    SM       
Sbjct: 68  RPFSIPMVGEVAAGFPSP---EEEELRDILSLDEYLVARPDASFLLQVSGDSMTGAGILP 124

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           GD++I+    +   GD ++I    G+   K    +    + L + N  Y        +++
Sbjct: 125 GDLVIVEKGREPKNGD-VVIAEVDGEWTMKTF-RKEKGEVYLEAANPKY-PIIRPRQELK 181

Query: 214 WIARI 218
               +
Sbjct: 182 LAGVV 186


>gi|315637279|ref|ZP_07892498.1| XRE family transcriptional regulator [Arcobacter butzleri JV22]
 gi|315478443|gb|EFU69157.1| XRE family transcriptional regulator [Arcobacter butzleri JV22]
          Length = 216

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 25/201 (12%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
             ++ K  +   S  + KR                K +  T   IC+   +  +  +T +
Sbjct: 24  REISEKYKITQQSVGQLKR---------------KKAINETISFICEAEKINLNWIQTGK 68

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPEIRSPHNGIYAIQTQDTRHK- 141
            +      +            +     G       +   +  S     +       + K 
Sbjct: 69  GEMFISEDIVKNSDSYSIDLLNVRAGAGEGIYNYVIETVDTISLDKSFFRSPINTNKVKG 128

Query: 142 --TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
                 SM P  R GD ++++  I              G I+ K L  +   +I ++S N
Sbjct: 129 ICVDGDSMEPTLRDGDYVLIDENINFGTNGI-YAIQYGGQILIKRLQFKMDGTIIIISDN 187

Query: 200 CCYPVDTVEMSD----IEWIA 216
             Y  +    S+       I 
Sbjct: 188 EKYDREIFNPSENQLPFNIIG 208


>gi|292488579|ref|YP_003531463.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia
           amylovora CFBP1430]
 gi|292899749|ref|YP_003539118.1| protein UmuD [Erwinia amylovora ATCC 49946]
 gi|291199597|emb|CBJ46714.1| protein UmuD [Erwinia amylovora ATCC 49946]
 gi|291554010|emb|CBA21063.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia
           amylovora CFBP1430]
 gi|312172726|emb|CBX80982.1| Error-prone repair, SOS-response transcriptional repressor [Erwinia
           amylovora ATCC BAA-2158]
          Length = 139

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +       +     K    SM       GD+LI++ ++    GD ++  
Sbjct: 32  DYVE--DRIDLNKLAIKHPSATYFIKVSGDSMCEAGIGDGDLLIVDRSLNAVHGDIVVAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
              G+   K L +     + L+  N  Y   +     ++E    +
Sbjct: 90  I-AGEFTVKELRTHP--FLQLVPHNPHYSPISFRNEEELEIFGVV 131


>gi|2688954|gb|AAC82517.1| MucA [IncL/M plasmid R446b]
          Length = 144

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H+            +    SM       GD+L+++ A +   G  ++      +   K L
Sbjct: 43  HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             R      LM LN  +P    +   ++    +
Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132


>gi|238794668|ref|ZP_04638273.1| LexA repressor [Yersinia intermedia ATCC 29909]
 gi|238725974|gb|EEQ17523.1| LexA repressor [Yersinia intermedia ATCC 29909]
          Length = 202

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ +     +  + P  + +A++ G                  R P+  
Sbjct: 1   MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEEEDGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  + L+  N  +    V++ +
Sbjct: 150 D-DEVTVKRLKKQ-GNIVQLLPENSEFQPIIVDLRE 183


>gi|71275911|ref|ZP_00652194.1| Peptidase S24, LexA repressor [Xylella fastidiosa Dixon]
 gi|71899251|ref|ZP_00681413.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1]
 gi|170729336|ref|YP_001774769.1| LexA repressor [Xylella fastidiosa M12]
 gi|229470192|sp|B0U1K7|LEXA_XYLFM RecName: Full=LexA repressor
 gi|71163288|gb|EAO13007.1| Peptidase S24, LexA repressor [Xylella fastidiosa Dixon]
 gi|71730984|gb|EAO33053.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1]
 gi|167964129|gb|ACA11139.1| Repressor lexA [Xylella fastidiosa M12]
          Length = 211

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 54/209 (25%), Gaps = 23/209 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I        ++PS   +AR  G            G+              ++ 
Sbjct: 7   QQAILSLITNHINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 56

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   +     +         +   +L  P  G            G         + 
Sbjct: 57  RVPGQARGIRLKHLTQVDEAALALQSEDVLRLPVLGRVAAGQPIGADIGE--------DR 108

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               + ++     D   + Q  SM       GD++ ++     + G  ++ +    +I  
Sbjct: 109 VVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTHDAHSGQIVVARID-DEITV 167

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L+      I L+  N  +    V    
Sbjct: 168 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 195


>gi|200389474|ref|ZP_03216085.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199601919|gb|EDZ00465.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 158

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 7/143 (4%)

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +      S      +  +   L          +     FP+    + +   +    +  
Sbjct: 6   NEATVYKNSIWVWIMEFFRPTELREIIYLPFFSYLVPCGFPSPAA-DYIE--QRIDLNEL 62

Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           + +  +     K    SM+      GD+L+++S+     GD ++     G+   K L  R
Sbjct: 63  LVSHPSSTYFVKATGDSMIDAGINDGDLLVVDSSRTAEHGDIVIAAVD-GEFTVKRLQLR 121

Query: 189 RGRSIDLMSLNCCYPVDTVEMSD 211
              ++ L  +N  Y    V   D
Sbjct: 122 P--TVQLNPMNSAYSPIIVGSED 142


>gi|145629809|ref|ZP_01785603.1| hypothetical protein CGSHi22121_00852 [Haemophilus influenzae
           22.1-21]
 gi|148827552|ref|YP_001292305.1| hypothetical protein CGSHiGG_04885 [Haemophilus influenzae PittGG]
 gi|144977955|gb|EDJ87743.1| hypothetical protein CGSHi22121_00852 [Haemophilus influenzae
           22.1-21]
 gi|148718794|gb|ABQ99921.1| hypothetical protein CGSHiGG_04885 [Haemophilus influenzae PittGG]
          Length = 256

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 70/257 (27%), Gaps = 49/257 (19%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+       E + R     NLT + LA   G    + +   +   + + R     +I +
Sbjct: 1   MTTL-----AERLKRTLLERNLTQNDLAEMVGTTQGAISNIVKGETQ-KPR-----NILE 49

Query: 61  ILAATNETICQLLDLPFSDGRTTEKK---------------------------EKEIPLL 93
           I  A       L +        +  +                            K+   L
Sbjct: 50  IANALGVDPNWLRNGGDMIVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLHKQQISL 109

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI---------YAIQTQDTRHKTQD 144
              P+    F                 P      +                        +
Sbjct: 110 KTKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFN 169

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-P 203
            SM P+  K D++ +++  +   G+ + +     ++  + L       ++ ++ N     
Sbjct: 170 ESMSPVINKKDLMFVDTNCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNAVAENERVGS 229

Query: 204 VDTV-EMSDIEWIARIL 219
              + ++S +  + R +
Sbjct: 230 SFEIDDLSRLNVLGRCV 246


>gi|126696260|ref|YP_001091146.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543303|gb|ABO17545.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9301]
          Length = 138

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +     E    +  + +        + +  SM+    +  D++I++ ++    G+ ++
Sbjct: 28  ADDYEE--ENIDLNEHLISNPFSTFFLRVKGDSMVNAGIKDKDLIIVDKSLTARPGNIII 85

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
                G+   K L  +    + L + N  YP    +   D++    ++
Sbjct: 86  AMID-GEFTIKRLSIK-NNELYLKAENHNYPDFRFKNHIDVQIWGVVI 131


>gi|258514188|ref|YP_003190410.1| peptidase S24 and S26 domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777893|gb|ACV61787.1| peptidase S24 and S26 domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 338

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 11/112 (9%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
               NK   + VP                        SM+     +GD+++         
Sbjct: 176 LSEQNKIGEIDVPANLVGRVD--------FALYVNGNSMIGAGINEGDLVLCKQDYNPYP 227

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++    T +   K  I      + L + N  Y    +   D +    ++
Sbjct: 228 GEIVVALVNTDETTLKYYIK-ENDKVLLRAANPKYKDIELGPGD-QIQGNVV 277


>gi|332360345|gb|EGJ38157.1| phage transcriptional repressor [Streptococcus sanguinis SK49]
          Length = 257

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +        L+R+ G+  ++     +         P   ++ KI       
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111
           + ++           ++      +                        +        FP 
Sbjct: 74  VEEIDPRYRLIADIPQQFPDLNHIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +    + + +     +  +  +   D     +  S+ P Y   D + L         
Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|300722911|ref|YP_003712207.1| putative prophage repressor protein [Xenorhabdus nematophila ATCC
           19061]
 gi|297629424|emb|CBJ90025.1| putative prophage repressor protein ( phage repressor protein cI)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 237

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 65/233 (27%), Gaps = 21/233 (9%)

Query: 2   TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + ++I +A  +  +     ++  +T   LA +     ++ +              + 
Sbjct: 3   KKLTTEQIADAARLKELFESKKKQLGITQETLAEEIDKTQSAISHYLNGIN-----ALNL 57

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E            I           R   +      + +         +    +     W
Sbjct: 58  EMATYFAQKLGIRIADFSPSLDKQARKLARVLYGDKVSFVNHPQFQKQYPLLDWENAGHW 117

Query: 116 NTVGVPEIRS-----PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVN 166
                P   S      +  +     +      +  +M+        +G I++++  ++  
Sbjct: 118 CEETTPTYHSNSIEKRYETVVECSQRAFWLAVKGDAMVSPSGLSIPQGMIILVDPEVKPK 177

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + ++ K    + +    +   G    L  LN  Y +  ++   +  +  ++
Sbjct: 178 TNNLVVAKLDGEEELIFRQLISEGYDTFLKPLNSQYNMIPLD-DHVYIMGVVV 229


>gi|114324653|gb|ABI63635.1| unknown [Streptococcus salivarius]
          Length = 264

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 67/251 (26%), Gaps = 47/251 (18%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++ +    T    + K G    +  K +          P+ + + K++     T  
Sbjct: 17  DRLIKLRQARGWTKKEFSAKIGKTQQTVGKWENGSN-----APTFKDLVKLVGLFGVTSD 71

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSG---------SGGFFDSGVFPTGNKWNTV--- 118
            LL L  S  +       +                   +   F        +    +   
Sbjct: 72  YLLGLSDSPSKYAYPPINDNKQEQVEEMFKELDEGNQDATVDFIENRLDNQHISKEIKEN 131

Query: 119 ----------GVPEIRSP-------------------HNGIYAIQTQDTRHKTQDTSMLP 149
                       P  R                      +    I   D   K    SM P
Sbjct: 132 DLKKQTGINEERPTKRVSIYARVDAQGFELSEVPVDCLDYPVPIPVHDIALKVVGNSMEP 191

Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-E 208
           ++   +++ +     +  GD  +++  +   V KV  +     I L SLN      ++  
Sbjct: 192 IFLDDEVIFVMKNSILRTGDIAIVQLDSRYCVMKVCKNSENGDIILNSLNTDETAISLTR 251

Query: 209 MSDIEWIARIL 219
            +      +++
Sbjct: 252 KNSCTIFGKVV 262


>gi|270263338|ref|ZP_06191608.1| transcriptional repressor [Serratia odorifera 4Rx13]
 gi|270043026|gb|EFA16120.1| transcriptional repressor [Serratia odorifera 4Rx13]
          Length = 202

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I        + P  + +A + G                  R P+  
Sbjct: 1   MKALTTRQQEVYDLIRDHISSTGMPPTRAEIAMRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEDEEGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSLFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L    G  ++L+  N  +    V++  
Sbjct: 150 -EDEVTVKRLKKH-GNVVELLPENSEFQPIVVDLRQ 183


>gi|328946013|gb|EGG40159.1| phage transcriptional repressor [Streptococcus sanguinis SK1087]
          Length = 257

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +        L+R+ G+  ++     +         P   ++ KI       
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111
           + ++           ++  +   +                        +        FP 
Sbjct: 74  VEEIDPRYRLIADIPQQFPELNRIYQQLNQDRQEQGLKLLEASLTEQETHASLKDDYFP- 132

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +    + + +     +  +  +   D     +  S+ P Y   D + L         
Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|862632|gb|AAC45831.1| RumA(R391) [IncJ plasmid R391]
 gi|19571780|emb|CAD27658.1| RumA protein [Providencia rettgeri]
 gi|20095189|gb|AAM08055.1| RumA [Providencia rettgeri]
 gi|262318127|dbj|BAI48453.1| RumA [Proteus mirabilis]
 gi|1096690|prf||2112258A rumA gene
          Length = 149

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             + +  SM+       DIL+++ ++Q   GD ++  
Sbjct: 39  DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G++  K L  R    + L+  N  Y    +   +++E    +
Sbjct: 96  GIHGELTVKELQLRP--CVKLIPRNQAYEPIHIPEGTELEIFGVV 138


>gi|160899547|ref|YP_001565129.1| putative phage repressor [Delftia acidovorans SPH-1]
 gi|160365131|gb|ABX36744.1| putative phage repressor [Delftia acidovorans SPH-1]
          Length = 216

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 58/223 (26%), Gaps = 29/223 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
                +K    +    +R             +   +  + K      R      ES+ K 
Sbjct: 14  AMLFGEKSIAGLRAEMKRDGY---------DIGQGTLGRIKNGETGVR-----MESLQKF 59

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                  I  LL     D     +  +    +   P  S G  +              + 
Sbjct: 60  ADYFRVDIDTLLRGQVDDEDDYIQISRLSVEVGAGPGRSNGVVEHLS----------ALQ 109

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             R                    TSM P  R G IL+LN A +      +      GD++
Sbjct: 110 FRRDFLRAAGVSPLNAAVVNVVGTSMEPTIRDGSILLLNRADKEPRNGSIYAFSWDGDML 169

Query: 182 AKVLISRRGRSIDLMSLNCC---YPVDTVE-MSDIEWIARILW 220
            K            +S N     +P   V+  ++     R +W
Sbjct: 170 VKRFQRVSD-VWHAVSDNADKDEHPDIVVDGKAEALIQGRAIW 211


>gi|270619286|ref|ZP_06221803.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
 gi|270317856|gb|EFA29200.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
          Length = 96

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                      SM P+   G  + ++   +     ++      G +  K+L +     + 
Sbjct: 5   ENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVK 64

Query: 195 LMSLN-CCYPVDTVEMSDIEWIARILWAS 222
           + S N   +P +  E+ DI  + ++ W S
Sbjct: 65  IRSYNTEEHPDEIAELQDISVLGKVFWYS 93


>gi|167821752|ref|ZP_02453432.1| repressor protein, putative [Burkholderia pseudomallei 91]
          Length = 208

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 11/174 (6%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           P  E++ K   AT + I  LL          E +  +          S  F     +P  
Sbjct: 39  PGLETLRKFRDATGKPIGWLLGEDVLYVSADENQALKPK-------ESDEFVYIPRYPRN 91

Query: 113 NKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
                V +   R        A   +    +  D  M   + + D +++N        D L
Sbjct: 92  GALEQVTMAFRRYWVEKYLQANPEKLIVLRVDDDVMEGTFNRADNILVNMNPLSPVKDGL 151

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWAS 222
                   +V + +       I +M  N  YP     + +   +E     +W S
Sbjct: 152 YALYINDAMVVRRVQVLPNNVIRVMPDNPRYPSFETSLEEGSGVEIAGVPVWYS 205


>gi|2688959|gb|AAC82521.1| MucA [IncL/M plasmid R471a]
 gi|44443459|gb|AAS47041.1| MucA [Enterobacter cloacae]
          Length = 144

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H+            +    SM       GD+L+++ A +   G  ++      +   K L
Sbjct: 43  HDYCVRHPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             R      LM LN  +P    +   ++    +
Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132


>gi|21230556|ref|NP_636473.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769453|ref|YP_244215.1| LexA repressor [Xanthomonas campestris pv. campestris str. 8004]
 gi|44888105|sp|Q8PBM1|LEXA1_XANCP RecName: Full=LexA repressor 1
 gi|21112131|gb|AAM40397.1| LexA repressor [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574785|gb|AAY50195.1| LexA repressor [Xanthomonas campestris pv. campestris str. 8004]
          Length = 201

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176
           +G+         ++A++      + Q  SM+     +GD++ +  +     G  ++ +  
Sbjct: 95  IGLDRQLWLDRSLFALRPD-YLLQVQGDSMIDDGILEGDLVGVQRSSDARNGQIVVARVD 153

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            G+I  K L      +I L+  N  +    V   
Sbjct: 154 -GEITIKRLER-SADAIRLLPRNPAHAPIVVAAD 185


>gi|270159934|ref|ZP_06188590.1| UmuD [Legionella longbeachae D-4968]
 gi|289165318|ref|YP_003455456.1| UmuD protein [Legionella longbeachae NSW150]
 gi|269988273|gb|EEZ94528.1| UmuD [Legionella longbeachae D-4968]
 gi|288858491|emb|CBJ12372.1| putative UmuD protein [Legionella longbeachae NSW150]
          Length = 168

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        ++      +     +    SM+      GD L+++ +I+ + G  ++
Sbjct: 58  ADDYIE--GYLDLNSKFIKHPSSTFVLQATGDSMVDAGIFSGDWLLVDRSIEPSDGRIVI 115

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L+++ G  + L+  N  +    +       I  ++
Sbjct: 116 AAVN-GELTVKRLLNK-GGKVQLLPANPKFKPIDITEGSEMVIWGVV 160


>gi|259156159|gb|ACV96107.1| protein UmuD [Providencia alcalifaciens Ban1]
          Length = 149

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             + +  SM+       DIL+++ ++Q   GD ++  
Sbjct: 39  DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G++  K L  R    + L+  N  Y    +   +++E    +
Sbjct: 96  GIHGELTVKELQLRP--CVMLIPRNRAYEPIHIPEGTELEIFGVV 138


>gi|302038441|ref|YP_003798763.1| lexA repressor [Candidatus Nitrospira defluvii]
 gi|300606505|emb|CBK42838.1| LexA repressor [Candidatus Nitrospira defluvii]
          Length = 183

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 49/199 (24%), Gaps = 42/199 (21%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++ E+  LT   LA        S  + +               + +I  A    I QL 
Sbjct: 8   RQIREQLGLTQEELAAALRTTRVSVARYESG-------------MRRISGAVQVAITQLA 54

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
           +               I  +                        V VP            
Sbjct: 55  NRTQIPMAGVVAAGLPIEPVTQS-------------------EWVEVPPGMVR------- 88

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           + +    + +  SM       GD++++      + G  ++      +   K    R    
Sbjct: 89  KGETFALRVKGESMIEDGILPGDLVVVRKQATAHNGQTVVALVNR-EATIKTYFKRATN- 146

Query: 193 IDLMSLNCCYPVDTVEMSD 211
           I+L   N       V   D
Sbjct: 147 IELHPANVAMKPFVVTPED 165


>gi|293390737|ref|ZP_06635071.1| LexA repressor [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951271|gb|EFE01390.1| LexA repressor [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 207

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 65/224 (29%), Gaps = 35/224 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   +++++ +    E   + P+    +A +        +             +++
Sbjct: 1   MKPLTARQQEVYDFLKHHLETTGMPPT----RAEISK------ELGFRSPNAAEEHLKAL 50

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K                      +        LL        G    G    G      
Sbjct: 51  AK---------------KGVIEIVSGTSRGIRLLLEDHSQEEAGLPLIGRVAAGEPILAE 95

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E     +        D   K    SM  +    GD+L ++S   V  G  ++ +   
Sbjct: 96  QHIEGTYHVDPNMFKPQADFLLKVYGQSMKDVGILDGDLLAVHSTKDVRNGQIVVARI-E 154

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216
            ++  K L  + G  + L + N  +    V+++     +IE IA
Sbjct: 155 DEVTVKRLERK-GSVVYLHAENEEFSPIVVDLTQPMHFEIEGIA 197


>gi|157372693|ref|YP_001480682.1| LexA repressor [Serratia proteamaculans 568]
 gi|166990803|sp|A8GKB4|LEXA_SERP5 RecName: Full=LexA repressor
 gi|157324457|gb|ABV43554.1| transcriptional repressor, LexA family [Serratia proteamaculans
           568]
          Length = 202

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I        + P  + +A + G                  R P+  
Sbjct: 1   MKALTTRQQEVYDLIRDHISSTGMPPTRAEIAMRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIISGASRGIRLLMEDEEGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSLFKPSADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L    G  ++L+  N  +    V++  
Sbjct: 150 -EDEVTVKRLKKH-GNVVELLPENSEFQPIVVDLRQ 183


>gi|302127790|emb|CBO78204.1| MucA protein [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 144

 Score = 70.6 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H+            +    SM       GD+L+++ A +   G  ++      +   K L
Sbjct: 43  HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVKQL 101

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             R      LM LN  +P    +   ++    +
Sbjct: 102 QLRPYPC--LMPLNPAFPPIRFDPEALQIWGVV 132


>gi|255320061|ref|ZP_05361256.1| peptidase S24-like domain protein [Acinetobacter radioresistens
           SK82]
 gi|262378255|ref|ZP_06071412.1| HTH-type transcriptional regulator PrtR [Acinetobacter
           radioresistens SH164]
 gi|255302870|gb|EET82092.1| peptidase S24-like domain protein [Acinetobacter radioresistens
           SK82]
 gi|262299540|gb|EEY87452.1| HTH-type transcriptional regulator PrtR [Acinetobacter
           radioresistens SH164]
          Length = 234

 Score = 70.6 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 19/228 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E I    ++ NL    L         + +K          +  S   + K L  T E
Sbjct: 3   NVSERILLRMKQLNLQQVDLIAATESSKGTVSKWISGVNMPSGK--SIIPLAKALKTTPE 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPL-LYFPPSGSGGFFDSGVFPTGNKW-------NTVG 119
            I      P    +T ++                  FF +  F  G+          +  
Sbjct: 61  WILTGEGPPLLKDQTLQEVSTWDESTPINKDEIEIPFFQNFSFDCGSGSVGEALKAQSQV 120

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +   ++    +   +           SM P  + GD + L+   +     ++      G 
Sbjct: 121 LRISKATLRDLGIEKENAVATGASGDSMKPTIKDGDTIYLDLGRKTIKDGKIFAICHGGL 180

Query: 180 IVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSD--------IEWIARI 218
            VAK L +     + ++S N   YP   +   +        + W+ RI
Sbjct: 181 FVAKRLYNLPMGGVRIVSDNTAEYPEVLLNAEERKEQEFEIVGWVWRI 228


>gi|54301769|ref|YP_131762.1| prophage MuSo1, Cro/CI family transcriptional regulator
           [Photobacterium profundum SS9]
 gi|46915189|emb|CAG21962.1| putative prophage MuSo1, transcriptional regulator, Cro/CI family
           [Photobacterium profundum SS9]
          Length = 220

 Score = 70.6 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 58/204 (28%), Gaps = 14/204 (6%)

Query: 30  KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE 89
           K G+   S    +  G   +    ++ +I  +    +       D   S    +    ++
Sbjct: 17  KDGIAHFSVRLKELIGNGPKLTESTSHTIEHLQPINHINKNLKWDNLISVCAYSNDDAQQ 76

Query: 90  IPLLYFPPSGSGGFF--DSGVFPTGNKWNTVGVPEIRS------PHNGIYAIQTQDTRHK 141
                   +               G+  + +  P  R                 +     
Sbjct: 77  EDGANDAINEEFVLVPGYHIQVSAGHGTSAIYAPVKRYLAFRRKYIQYRKLDPNKLAVIF 136

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
            +     P+ +  D L+++         ++ +     ++ AK +      S+ L+S N  
Sbjct: 137 AKGD---PMIKDNDSLLIDLNANKPLDGKIFVVRLGDELYAKRVQKSFDGSLRLISDNKE 193

Query: 202 YPVDTVEMSDIE---WIARILWAS 222
           Y    V    ++    I R++  S
Sbjct: 194 YSPIEVSTDQLDQLCIIGRVVQRS 217


>gi|293386435|ref|YP_003540597.1| UV protection protein [Erwinia amylovora ATCC 49946]
 gi|291201078|emb|CBJ48216.1| UV protection protein [Erwinia amylovora ATCC 49946]
          Length = 142

 Score = 70.6 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V        ++     ++     +    SM     + GD+++++ ++    GD ++  
Sbjct: 35  DYVE--ASLDLNDLCIRHRSATYFVRASGDSMNDAGIKDGDLMVVDKSLTAEHGDIVIAA 92

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
              G+   KVL  R    + L  +N  +P    E   +E    + W
Sbjct: 93  -VEGEFTVKVLQLRP--RLALQPMNPSFPTLFPEPDTLEIFGVVTW 135


>gi|301381627|ref|ZP_07230045.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           tomato Max13]
          Length = 232

 Score = 70.6 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 4/193 (2%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            S LA   G      ++      +   +    +   ++  A +     L  L   D + +
Sbjct: 27  QSRLAEMLGKPQNLLSRYLSSPEKAGAKTIGEDFAREVEKAFDLPRYALDILEAPDDQVS 86

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
                E+      P+       +        W  +   +         +        + +
Sbjct: 87  ASNNFEVGPPITSPTRRIAIVGTAQLGPDGYWAGLDTTDGWVETW---SRDEDAYALRLK 143

Query: 144 DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
             SM P  R G + +   + ++  G+ +++K   G  + K L+      + LMS+N  Y 
Sbjct: 144 GDSMAPAIRSGWVAVCEPSHRLVPGEYVMVKLCDGQSMVKELLFETEDGVSLMSVNSAYG 203

Query: 204 VD-TVEMSDIEWI 215
              T+  SDIE I
Sbjct: 204 ERTTLSWSDIERI 216


>gi|255019440|ref|ZP_05291546.1| Error-prone repair protein UmuD [Acidithiobacillus caldus ATCC
           51756]
 gi|254971117|gb|EET28573.1| Error-prone repair protein UmuD [Acidithiobacillus caldus ATCC
           51756]
          Length = 158

 Score = 70.6 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
              + +  L+           +  FP+    + V   +    +  +   +      +   
Sbjct: 21  TSPRPVGALHRYRLPLMVSRIAAGFPSPA-DDYVE--KQIDLNAHLILHKEATFILRVTG 77

Query: 145 TSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
            SM       GD ++++ AI    G  ++     GD+  K L    G ++ L++ N  +P
Sbjct: 78  WSMRDAGIFDGDEILVDRAITPTDGRIVVAAIN-GDLTVKRLRRI-GGAVHLVAENPEFP 135

Query: 204 VDTVEMSDIEWIARIL 219
              +   +   I  ++
Sbjct: 136 PIVLHEGEELCIWGVV 151


>gi|260654737|ref|ZP_05860225.1| toxin-antitoxin system, antitoxin component, Xre family
           [Jonquetella anthropi E3_33 E1]
 gi|260630452|gb|EEX48646.1| toxin-antitoxin system, antitoxin component, Xre family
           [Jonquetella anthropi E3_33 E1]
          Length = 240

 Score = 70.6 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 71/230 (30%), Gaps = 31/230 (13%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI-- 61
            + +++ + +    E   +T   ++   G+   +  + +               +  +  
Sbjct: 1   MNGQELKKRLRAAREAAGVTQKTVSETLGISKMTIVRWESLDAPNEPTASQLVQLASLYG 60

Query: 62  -------LAATNETICQLLDLPFSDGRTTEKKE------KEIPLLYFPPSGSGGFFDSGV 108
                    AT     +      +     + +       + +PLL    +   G      
Sbjct: 61  TSVAALTAEATPADKKEAAPDDGTALYPNDPRVIPLTNCRRVPLLSPEATAHCGGGCPFH 120

Query: 109 FPTGNKWNTV-----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
             T +    +      +          +A+ ++    ++           GD LI+N A 
Sbjct: 121 EITSDATEYILCTPDELGSPIDDLRPPFAVPSEGDCLESVG------VYDGDKLIINPAA 174

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           ++   D  ++  R   + AK +  R   +I+L S +    V  V   DI+
Sbjct: 175 EIRDFDICVVCWR-DSLSAKRICKR-NGTIELRSDSG---VMIVPEDDID 219


>gi|78779247|ref|YP_397359.1| SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT
           9312]
 gi|78712746|gb|ABB49923.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Prochlorococcus marinus str. MIT 9312]
          Length = 138

 Score = 70.6 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             +     E    +  + +        + +  SM+    +  D++I++ ++    G+ ++
Sbjct: 28  ADDYTE--ENIDLNEHLISNPFSTFFLRVRGDSMINAGIKDKDLIIVDKSLTAKPGNIII 85

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
                G+   K L  +    + L + N  YP    +   D++    ++
Sbjct: 86  AMID-GEFTIKRLSIKNDE-LYLKAENHNYPDFRFKNHIDVQIWGVVI 131


>gi|303328306|ref|ZP_07358744.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861636|gb|EFL84572.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 242

 Score = 70.6 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 64/238 (26%), Gaps = 25/238 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  F   +I+E I         T   LA    +  +S + +KR            +   K
Sbjct: 13  MPVF--AEIYERIKLATSSR--TQVELAEVLDIRQSSISDAKRRNSVP------GDWYMK 62

Query: 61  ILAATNETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           +          L                             ++  + +     +      
Sbjct: 63  LFEKYGLNPDWLKQGVGPMYLRTEQGYMPQDAPASLAENAAHYGDALAKNSVCTEYDMHC 122

Query: 113 NKWNTVGVPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCG 168
              +    PE+         +   +      + +  +M PL   G  L +++    V  G
Sbjct: 123 AYSDKKPRPELTPAGKISLPLSLSREGLLVLRMRGANMSPLILPGAHLGVDTLDNNVVSG 182

Query: 169 DRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
               +      ++ + +          L S +  +P  ++    +    + +++W  Q
Sbjct: 183 QIYALFAPNEGLMLRRVFLNGAQDGYLLRSESPDFPEISLTPDLLAKRLLGKVVWVLQ 240


>gi|330897548|gb|EGH28967.1| putative UV resistance protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 143

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +    P        + A        +T+  SM P     G  L+++ A     G+ ++  
Sbjct: 35  DHYEAPISLDDLVDLRA--PHVWLGETEGDSMSPAGILNGTKLVIDRARTPQVGNVVVAY 92

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
                 V K L   R     L S N  YP     + +IE    + W+
Sbjct: 93  ID-NQPVVKRLDRPRNGGWMLSSDNPKYPPIQ-GLEEIEVFGVVTWS 137


>gi|238789914|ref|ZP_04633694.1| LexA repressor [Yersinia frederiksenii ATCC 33641]
 gi|238721987|gb|EEQ13647.1| LexA repressor [Yersinia frederiksenii ATCC 33641]
          Length = 202

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 3/178 (1%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  +      P+   I + L   +    +      +     E        + 
Sbjct: 8   QQEVYDLVRDHLSQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G         E     +      + D   +    SM  +    
Sbjct: 68  LLMEEEDGLPLIGRVAAGEPLLAQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILD 127

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           GD+L ++    V  G  ++ +    ++  K L  + G  + L+  N  +    V++ +
Sbjct: 128 GDLLAVHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GNIVQLLPENTEFQPIIVDLRE 183


>gi|313900736|ref|ZP_07834229.1| peptidase S24-like protein [Clostridium sp. HGF2]
 gi|312954798|gb|EFR36473.1| peptidase S24-like protein [Clostridium sp. HGF2]
          Length = 198

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 62/218 (28%), Gaps = 34/218 (15%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + ++    R ++T   +A   G++ ++ ++  +       +      I K+      
Sbjct: 2   QLKDLLNEYKCRMSVTNDYIAEHVGVNKSTVSRWMKGET----KVMKPAVIEKLSYLLGT 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +  LL       +      K             G F          +  V   +     
Sbjct: 58  DVESLLKNSDRFEKPLLGTAKA----------GYGLFAEENLA---GYEEVSKSDYYRG- 103

Query: 128 NGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                    D   +    SM        D++ +     V  G   +I     ++  K +I
Sbjct: 104 ---------DYFLRVCGDSMTGAHIHDQDLIYVKQCDDVKSGTIAVILIGNTEVTVKRII 154

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARIL 219
            +    + L + N   P       ++       I ++L
Sbjct: 155 KKEP-FLILEAANPTVPARYFTQEEVRDLPVKIIGKVL 191


>gi|319762368|ref|YP_004126305.1| peptidase s24/s26a/s26b, conserved region protein [Alicycliphilus
           denitrificans BC]
 gi|317116929|gb|ADU99417.1| Peptidase S24/S26A/S26B, conserved region protein [Alicycliphilus
           denitrificans BC]
          Length = 256

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 39/237 (16%)

Query: 12  AIDRMAERHNLTPSGLARKAGLD--PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            +  + +   L P  L  K+G     ++ ++     +    R  + + +   L       
Sbjct: 26  FLKAVMDARGLNPHALGAKSGNPSLQSTVHRYLERKVN-EPRRATLQPLADFLQVDVAAF 84

Query: 70  CQLL--------------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                                 S+           PL+    +G         F  G+  
Sbjct: 85  FDADKARAELARLGLLAGPREESNITEGPAIRGLYPLISEVQAGMWTELCDN-FARGDAE 143

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDR 170
           + +   +          +       + +  SM        + +G +L + + +    GD 
Sbjct: 144 DWLPSTKD---------LGECGYMLRVRGKSMENPGARLSFPEGMVLHVRAHLDAVPGDF 194

Query: 171 L-LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD----TVEMSDIEWIARILWAS 222
           + + +  TG+   K  +        L ++N  +P +     ++  D+ W   ++ AS
Sbjct: 195 VIVRREGTGEATFKKFVMI-DGHPYLEAINPDWPKELKYLPMQPGDV-WCGVVVDAS 249


>gi|256826753|ref|YP_003150712.1| SOS response transcriptional repressor, RecA-mediated autopeptidase
           [Cryptobacterium curtum DSM 15641]
 gi|256582896|gb|ACU94030.1| SOS response transcriptional repressor, RecA-mediated autopeptidase
           [Cryptobacterium curtum DSM 15641]
          Length = 228

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 64/229 (27%), Gaps = 16/229 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S     + +    E   +T   +A        + NK +  G++ R R    + +  
Sbjct: 1   MAQVSRSVFGKNLRAFRESRGITQQQIADVTDTTNVTVNKWENRGVQPR-RKIVDDLLAY 59

Query: 61  --ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-T 117
             +      +    L        +               +   G   +G     +  +  
Sbjct: 60  YSLDEDDLLSDVSGLYAQIHGLTSAPAGAIAAKKPRRAYAPLLGRVHAGEAVEPDILDSE 119

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P     H+            + + + M  +Y +G  + ++  +    G   +     
Sbjct: 120 IPIPYEVWEHH------QSGYFLQVEGSCMNRVYPEGCYVFIDPDMTPQDGSIAVSSIDE 173

Query: 178 GDIVAKVLISRRGRSIDLMSLN--CCYPVDTVEMSD---IEWIARILWA 221
            D + + L      ++ L   +    +    +       + +   ++W 
Sbjct: 174 TDYIMRRLH-MGATTMILSPESFDEQWEDLIITRDSGKTVSFQGVVVWY 221


>gi|92113335|ref|YP_573263.1| XRE family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796425|gb|ABE58564.1| transcriptional regulator, XRE family [Chromohalobacter salexigens
           DSM 3043]
          Length = 205

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 19/212 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   I ++     L+ + LAR+ G+   + +  +     G  +    E +  +  A  
Sbjct: 2   DTLGPRIKQLRMEAGLSKAALARRVGVSDVTISYWE----SGTIKQIGHERLLSLAEALE 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             + +LLD         E +     +L    +    +    + P  +       P     
Sbjct: 58  CPLERLLDNNTPTHHEFEGELAHASILALHSASPPPWERHFLAPVASA------PGSALS 111

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                 +Q           +       GDI  +         + L +      +V + L 
Sbjct: 112 EL----LQGCYLVTPADGETFAH-LGTGDIAAVFPT-SHFDEEGLYLLQWRHTLVIQQLS 165

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                ++   S++   P +T+    +  I RI
Sbjct: 166 RLPSGAL---SMDGEPPSETLPPQSLCIIGRI 194


>gi|289661574|ref|ZP_06483155.1| LexA repressor [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 201

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   S ++  +   +     +  ++PS   +A+  G          R   +   +  +  
Sbjct: 1   MPPLSPQRAAVLVFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALAEA 52

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++L                 GR        +P+L    +G          P G    
Sbjct: 53  GLIELLPN-------QKRGIRMPGRAGRDALLNLPVLGRVAAG---------VPIGA--- 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +G+         ++ ++      + Q  SM+      GD++ ++ + +   G  ++ + 
Sbjct: 94  DIGLERQLWLDRALFPLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G+I  K L       I L+  N  +    V   
Sbjct: 153 D-GEITIKRLER-GAERIRLLPRNRAHAPIVVAAD 185


>gi|126642082|ref|YP_001085066.1| EsvI [Acinetobacter baumannii ATCC 17978]
          Length = 154

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
            K  P+L +  +G+     S           + +P+  +               K Q  S
Sbjct: 15  AKLAPVLSWVQAGTFTNVQSVDLSM--VEEWLPLPDECT----------NCFYLKVQGVS 62

Query: 147 MLPLYRKGDILILNSA---IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
             P + +GD ++++       +  GD ++++ R  D   K L+     S  L +LN  + 
Sbjct: 63  NQPDFLEGDYILVDPDVYYSDMQSGDMVVVR-RFEDATFKKLVIETDGSRYLQALNPKFE 121

Query: 204 VDTVEMSD-IEWIARIL 219
            + + + +   ++ +++
Sbjct: 122 PNIIPLDEHCYFVGQVV 138


>gi|149926948|ref|ZP_01915207.1| LexA repressor [Limnobacter sp. MED105]
 gi|149824500|gb|EDM83718.1| LexA repressor [Limnobacter sp. MED105]
          Length = 220

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 61/214 (28%), Gaps = 20/214 (9%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++I + I     +    P  + +AR+ G                       +
Sbjct: 1   MKGLTARQQEILDLIRDQITQFGRPPTRAEIARQLGF------------RSANAAEDHLQ 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K      +           +     ++                    G    G+   
Sbjct: 49  ALAKKNVIALDASTSRGIRLLGEYAEGLEETASKAAERAVEQFMQ-LPLIGRVAAGSPIL 107

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E + P +        D   K +  SM  +    GD+L +  A     G  ++ + 
Sbjct: 108 AQEHVEKQIPVDPSLFPDKPDYLLKVRGMSMKDIGIMDGDLLAVKKASTARAGQVVVARV 167

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K    ++G  ++L + N  +    V++
Sbjct: 168 N-DDVTVKRFF-QKGHVVELQAENSDFAPIEVDL 199


>gi|254498939|ref|ZP_05111643.1| hypothetical protein LDG_3019 [Legionella drancourtii LLAP12]
 gi|254351843|gb|EET10674.1| hypothetical protein LDG_3019 [Legionella drancourtii LLAP12]
          Length = 182

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 44/162 (27%), Gaps = 5/162 (3%)

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +          ++  L     R     +  +   Y   S                 + V
Sbjct: 17  CRYFGFLKGGAYEVPKLMEVSVRHEWVIKPFLADEYTTYSIPLYASKVQAGFPSPADDYV 76

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +    +          SM+      GD LI++ +++   G  ++     
Sbjct: 77  EC--SLDLNQALIRHPSATFILIAAGESMIDAGIHPGDKLIVDRSVEAVDGKIVIAA-LE 133

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G++  K L  +    + L+  N  +    +       I  ++
Sbjct: 134 GELTVKRLSRK-ANRVQLLPANPKFKSIDITEDSEMVIWGVV 174


>gi|319793471|ref|YP_004155111.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595934|gb|ADU37000.1| transcriptional regulator, XRE family [Variovorax paradoxus EPS]
          Length = 236

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 31/236 (13%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I +      E   LT       +G+   S +K +R       R     ++ +     +
Sbjct: 2   ETIAKRAKAAREYAKLTQKQAEVVSGVKQASISKIERGAT---IRTGGLLALAR-AYRAD 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE---- 122
                  D P        ++ +                    +      +TV +      
Sbjct: 58  PNWLDTGDGPAPWDPIQIRQAQHQANEPAAIYRVVRVPPELPYFKPGTPDTVPLISWSQA 117

Query: 123 -----------IRSPHNGIYAIQTQDTRHKTQDTSMLPL------YRKGDILILNSA-IQ 164
                       R      +    +    +    SM         Y +G I+ +++    
Sbjct: 118 ANWEIAGKHTTDRWIPCIAHHSPEKTYALRVDGDSMAAASGELKSYPEGSIIFVDTNLKT 177

Query: 165 VNCGDRLLIKPRTGD-IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G+R++     G  +  K    + G    L+ LN  +       +    +  ++
Sbjct: 178 PADGERVIALVTEGGKLTFKEFKEQDGPR-WLLPLNPKHEPI---RTAFVVLGTVI 229


>gi|327459757|gb|EGF06097.1| phage transcriptional repressor [Streptococcus sanguinis SK1057]
          Length = 257

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +        L+R+ G+  ++     +         P   ++ KI       
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111
           + ++           ++      +                        +        FP 
Sbjct: 74  VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLKASLTEQETQASLKDDYFP- 132

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +    + + +     +  +  +   D     +  S+ P Y   D + L         
Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|291616447|ref|YP_003519189.1| CI [Pantoea ananatis LMG 20103]
 gi|291151477|gb|ADD76061.1| CI [Pantoea ananatis LMG 20103]
 gi|327392887|dbj|BAK10309.1| 26 kDa repressor protein CI [Pantoea ananatis AJ13355]
          Length = 239

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 16/224 (7%)

Query: 11  EAIDRMAERHNLT------PSGLA-RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +    E   +T          A ++ G   ++    K F  +      +  ++ ++L 
Sbjct: 13  ARLIAACESAGITGHGRNKQVACALQRQGCKISAPGVWKWFNAQSVPDNGNLLALSQLLG 72

Query: 64  -ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                    +   P S         K    +     G                  +   +
Sbjct: 73  VRVEWLQHGMDQPPESYPLHAFPGPKNTFRVNSFDLGQKSAVGDDFV---EIIQAIEYDQ 129

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             +                    +M   +   D L ++ ++Q   GD + I      +  
Sbjct: 130 DEARVLFSGRPADHIRLIAINSDAMSDTFAPRDQLFVDISVQNFDGDGIYIFTLDEQLYL 189

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWASQ 223
           K L  +  + I ++S N  Y    ++  D+     +A+++  SQ
Sbjct: 190 KRLQLQH-KRIAVISDNKRYETWYLDRDDVGSLNVLAKVIM-SQ 231


>gi|327396074|dbj|BAK13496.1| LexA repressor LexA [Pantoea ananatis AJ13355]
          Length = 204

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 38/214 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   +++++ I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTSRQQQVYDLIRDHINQTGMPPTRAEIAAQLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                             L      S G    G    G   
Sbjct: 44  EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEPSEGLPLIGRVAAGEPL 90

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +      + D   +    SM  +    GD+L ++    V  G  ++ +
Sbjct: 91  LAQEHIETHYKVDPDMFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 150

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
               ++  K    + G  + L+  N  +    V+
Sbjct: 151 ID-DEVTVKRWKKQ-GSVVHLLPENNDFEPIVVD 182


>gi|319937013|ref|ZP_08011423.1| hypothetical protein HMPREF9488_02257 [Coprobacillus sp. 29_1]
 gi|319807949|gb|EFW04528.1| hypothetical protein HMPREF9488_02257 [Coprobacillus sp. 29_1]
          Length = 199

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 37/213 (17%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +I + I+    ++  +PS   +A   G+   +  K                 + ++    
Sbjct: 11  EIKKYIEDYYLQNRQSPSTTKIAEAVGIARGTAYKY----------------LIEMAEKN 54

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                          + + ++ +   +             S  +   N    V +P    
Sbjct: 55  MIEYDGQEISTNVTRKYSGEQTQTPIV-------GSIPCGSPQYEEENIEEYVSLPAAIF 107

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                   +      +    SM       GD++++   ++ N GD ++          K 
Sbjct: 108 G-------KGDFFILRASGQSMIEAGIDDGDLVVVKKQVEANEGDIVVALVD-NQNTLKR 159

Query: 185 LISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                  + I L   N       V   +     
Sbjct: 160 YFRDDENKKIILHPENKKMKDIIV--DECCIQG 190


>gi|264679715|ref|YP_003279624.1| phage repressor [Comamonas testosteroni CNB-2]
 gi|262210230|gb|ACY34328.1| putative phage repressor [Comamonas testosteroni CNB-2]
          Length = 220

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 29/218 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +AI R+ +          + AG  +   +  +        R      ESI K       
Sbjct: 22  GKAIGRLRDEM--------KTAGYAIGQGTLARIIAGDTGVR-----MESIQKFADFFGI 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +   LL  P +DG         + +     +G            G   +   +   R   
Sbjct: 69  STGALLHEPIADGENDFVPVARLSVQVGAGNGRH---------VGVVTSLGLLQFRRDFL 119

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                          +  SM P  R G IL+LN A +     ++      G+++ K   +
Sbjct: 120 KSAGVSPINAAVVTVKGVSMEPTIRDGSILLLNKADREPRAGQIYAFSWDGEMLVKRFQT 179

Query: 188 RRGRSIDLMSLNCC---YPVDTVE-MSDIEWIARILWA 221
             G     +S N     YP   ++  ++     R +W 
Sbjct: 180 I-GGVWRAVSDNADKSEYPDIIIDGKAETLIQGRAIWV 216


>gi|325694374|gb|EGD36286.1| phage transcriptional repressor [Streptococcus sanguinis SK150]
          Length = 257

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +        L+R+ G+  ++     +         P   ++ KI       
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111
           + ++           ++      +                        +        FP 
Sbjct: 74  VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +    + + +     +  +  +   D     +  S+ P Y   D + L         
Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|225076712|ref|ZP_03719911.1| hypothetical protein NEIFLAOT_01763 [Neisseria flavescens
           NRL30031/H210]
 gi|224951988|gb|EEG33197.1| hypothetical protein NEIFLAOT_01763 [Neisseria flavescens
           NRL30031/H210]
          Length = 213

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 8/163 (4%)

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            ++          L   P S   + +  +     L    +   G       P     + V
Sbjct: 47  RRLEEDYGMGSYYLDSTPNSPIGSDDDYQIRFERLNIEAACGNGI---ENLPAE-VVDYV 102

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            V  + +       + +       +  SM     +GD++ +++A+     D + +   + 
Sbjct: 103 NVSRLWAKDKFGGNL-SHIKIITARGDSMAGTIDEGDVIFVDTAVTEIVEDGVYLIHVSD 161

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARI 218
            + AK L       + ++S N  Y  +TV   ++  ++   +I
Sbjct: 162 GLRAKRLQRTVTGGVKILSDNKRYETETVEKHDLEQLKICGKI 204


>gi|303327564|ref|ZP_07358005.1| UmuD protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862504|gb|EFL85437.1| UmuD protein [Desulfovibrio sp. 3_1_syn3]
          Length = 160

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +      H  +   +      +    SML      GD+LI++ +++     R++I  
Sbjct: 52  EDDLDRKLDLHEYLVRNEAATFFLRAHGDSMLGAGIHDGDLLIVDRSVEAGHR-RVVIAA 110

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K L+ R    + L   N C+    +   +   I  ++
Sbjct: 111 LDGELTVKRLLRR-AGRVLLAPENPCFSPIDITEREYVHIWGVV 153


>gi|115314530|ref|YP_763253.1| prophage repressor protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010190|ref|ZP_02275121.1| prophage repressor protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367392|ref|ZP_04983418.1| prophage repressor protein [Francisella tularensis subsp.
           holarctica 257]
 gi|115129429|gb|ABI82616.1| prophage repressor protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253208|gb|EBA52302.1| prophage repressor protein [Francisella tularensis subsp.
           holarctica 257]
          Length = 221

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 12  LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                    T         +L +  +G        + P     + + +P+          
Sbjct: 67  PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 108

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           I       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 109 IPKNSFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 168

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN       +    +D   I R++
Sbjct: 169 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 213


>gi|317046525|ref|YP_004114173.1| transcriptional repressor, LexA family [Pantoea sp. At-9b]
 gi|316948142|gb|ADU67617.1| transcriptional repressor, LexA family [Pantoea sp. At-9b]
          Length = 204

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 38/217 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   +++++ I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTSRQQQVYDLIRDHINQTGMPPTRAEIAAQLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                             L      S G    G    G   
Sbjct: 44  EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEASEGLPLIGRVAAGEPL 90

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +      T D   +    SM  +    GD+L ++   +V  G  ++ +
Sbjct: 91  LAQEHIEAHYQVDANLFKPTADFLLRVSGMSMKDIGIMDGDLLAVHKTQEVRNGQVVVAR 150

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               ++  K    +    + L+  N  +    V+  +
Sbjct: 151 ID-DEVTVKRWKKQGA-IVQLLPENSDFQPIVVDTRE 185


>gi|124515802|gb|EAY57311.1| LexA repressor [Leptospirillum rubarum]
          Length = 222

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 25/209 (11%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++++E I +      L P  S +A+  G+                   P  +S    L 
Sbjct: 11  QREVFEFILKWMRETRLPPTLSEVAQFLGV-------------------PYPKSAATHLD 51

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A  +          + G       +   +     +        G    G    +  VP+ 
Sbjct: 52  ALEKKGFIQRSPGKARGILLTPLGESYQMDRLVENIVEIPI-VGRIRAGRLTGSEIVPDG 110

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +  D   + +  SM       GD+  +    +   GD ++     G++  
Sbjct: 111 TLAVPLSLFSEKPDFVLQIRGDSMNGAGILDGDMAFIRKTREARNGDLIV-AHIQGEMTL 169

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K LI    R I L + N  Y    V   D
Sbjct: 170 KQLI-VEKRQIILRAANPLYADIRVSPDD 197


>gi|197286578|ref|YP_002152450.1| LexA repressor [Proteus mirabilis HI4320]
 gi|227357653|ref|ZP_03842006.1| LexA repressor [Proteus mirabilis ATCC 29906]
 gi|229621741|sp|B4EYR3|LEXA_PROMH RecName: Full=LexA repressor
 gi|194684065|emb|CAR45417.1| LexA repressor [Proteus mirabilis HI4320]
 gi|227162363|gb|EEI47367.1| LexA repressor [Proteus mirabilis ATCC 29906]
          Length = 203

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 37/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ +     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTARQQQVYDLVRDHISQTGMPPTRAEIASQLGF-----------------RSPNAA 43

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         + L      G           +         G    G    G    
Sbjct: 44  E-------------EHLKALARKGVIEIVSGASRGIRLLLEEEPEGLPLIGRVAAGEPLL 90

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     + +    + D   +    SM  +    GD+L ++    V+ G  ++ + 
Sbjct: 91  AQEHIESHYQVDPMLFKPSADFLLRVNGMSMKDIGIMDGDLLAVHKTQDVHNGQVIVARI 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K      G  I+L + N  +    V++ +
Sbjct: 151 -EDEVTVKRFKKV-GSKIELHAENPEFSPIIVDLRE 184


>gi|71899997|ref|ZP_00682142.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1]
 gi|71730207|gb|EAO32293.1| Peptidase S24, LexA repressor [Xylella fastidiosa Ann-1]
          Length = 211

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 55/209 (26%), Gaps = 23/209 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I        ++PS   +AR  G            G+              ++ 
Sbjct: 7   QQAILSLITNNINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 56

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   +     ++        +   +L  P  G            G         + 
Sbjct: 57  RVPGQARGIRLKHLTEVDEAALALQSKDVLRLPVLGRVAAGQPIGADIGE--------DR 108

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               + ++     D   + Q  SM       GD++ ++     + G  ++ +    +I  
Sbjct: 109 VVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVARID-DEITV 167

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L+      I L+  N  +    V    
Sbjct: 168 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 195


>gi|197286330|ref|YP_002152202.1| DNA repair protein [Proteus mirabilis HI4320]
 gi|194683817|emb|CAR44905.1| DNA repair protein [Proteus mirabilis HI4320]
          Length = 149

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             + +  SM+       DIL+++ ++Q   GD ++  
Sbjct: 39  DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G++  K L  R    + L+  N  Y    V   +++E    +
Sbjct: 96  GIHGELTVKELQLRP--CVMLIPRNQAYEPIHVSEGTELEIFGVV 138


>gi|72382667|ref|YP_292022.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. NATL2A]
 gi|72002517|gb|AAZ58319.1| SOS-response transcriptional repressor, LexA [Prochlorococcus
           marinus str. NATL2A]
          Length = 202

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 8/192 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I   +  PS   + + +   +    Q            + +E +   L 
Sbjct: 10  QQELYDWLVDFIGDHHHSPSIRQMMQAMGLRSPAPIQSRLRHLQQKGWIKWQEGQARTLQ 69

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G    T    +     N +  ++           SM+      
Sbjct: 70  LIEESISGVPVLGAIAAGGLVETFDDVQETLDLNSVLQLKG-LFALTVNGDSMIDSFIAD 128

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++++    +      G  +           K      G  + L + N  Y    ++  
Sbjct: 129 GDMVLMEPVNEPARLRNGTIVSAMVPGLGTTLKHFFRD-GSLVRLEAANTSYDPIEIDAE 187

Query: 211 DIEWIARI--LW 220
            +    ++  +W
Sbjct: 188 QVHIQGKLAAVW 199


>gi|325926873|ref|ZP_08188154.1| SOS-response transcriptional repressor, LexA [Xanthomonas perforans
           91-118]
 gi|325542689|gb|EGD14150.1| SOS-response transcriptional repressor, LexA [Xanthomonas perforans
           91-118]
          Length = 191

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNC 167
            P G     +G+         +++++      + Q  SM+      GD++ ++ + +   
Sbjct: 79  LPIGA---DIGLERQLWLDRALFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARD 134

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           G  ++ +   G+I  K L       I L+  N  +    V   
Sbjct: 135 GQIVVARVD-GEITIKRLER-GAERIRLLPRNRAHAPIVVAAD 175


>gi|116073241|ref|ZP_01470503.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           RS9916]
 gi|116068546|gb|EAU74298.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           RS9916]
          Length = 212

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 49/189 (25%), Gaps = 6/189 (3%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I   +  PS   + + +   +    Q              +E +   L 
Sbjct: 20  QQELYDWLSDYIGANHHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 79

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                + G    G    G    T    + R     +   Q           SM+      
Sbjct: 80  LLGGLASGIPVLGAVAAGGLVETFDDVQERLDLAPVLETQG-LFALTVNGDSMVDAHIAD 138

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++++   ++      G  +           K        +I L + N  Y    + + 
Sbjct: 139 GDVVLMEPVLEASRLREGTIVSALVPGSGTTLKHFHR-SKGTIRLEAANPAYEPIVLPVD 197

Query: 211 DIEWIARIL 219
            ++   +++
Sbjct: 198 QVQVQGKLV 206


>gi|158341487|ref|YP_001522652.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina
           MBIC11017]
 gi|158311728|gb|ABW33338.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina
           MBIC11017]
          Length = 143

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 11/122 (9%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH--------NGIYAIQTQDTRHKTQDTSML 148
              +  + D    P  +   + G P     H        + +          + +  SM 
Sbjct: 5   SVHAVEWADPVCLPIFSAPVSAGFPSPADDHLQKNLNLQDALIPRPAATFLMRVEGDSME 64

Query: 149 P-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
                 GD+L+++ +I    G  ++I    G+   K L  +    I L + N  YP  TV
Sbjct: 65  GCGIFSGDLLVVDRSIDPVDG-AVVIAVLEGEFTVKRL-RKTQGKILLTAENPDYPPITV 122

Query: 208 EM 209
           + 
Sbjct: 123 QR 124


>gi|261340380|ref|ZP_05968238.1| repressor protein c2 [Enterobacter cancerogenus ATCC 35316]
 gi|288317471|gb|EFC56409.1| repressor protein c2 [Enterobacter cancerogenus ATCC 35316]
          Length = 238

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 28/223 (12%)

Query: 10  WEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFK------- 60
            +AI    ++   +T   +A +  +   +                S    + K       
Sbjct: 18  LKAIYEAKKKVLGVTQQSIADELDITQGAVGHYLNGRNPLNLPVASVFARLLKVSVEEFS 77

Query: 61  --ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +    +E     ++ P           K  P++    +GS        +   +    +
Sbjct: 78  PTLAKELSEMGLNSVNEPSVPYVIGYTPGKRYPVISSVQAGSWCEAME-PYSIKDVDQWL 136

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-I 173
                         IQ      + +  SM         +G  ++ ++  +   G  ++  
Sbjct: 137 ESDAH---------IQGDAFWLRVEGDSMTAPAGLSIPEGTFVLFDTGREPINGSLVIAK 187

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              + +   K LI   G+   L  LN  +P+  +  +    I 
Sbjct: 188 LSDSNEATFKKLIIDGGQKY-LKGLNPQWPLVPINGN-CRIIG 228


>gi|16765334|ref|NP_460949.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993577|ref|ZP_02574671.1| protein UmuD [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|238912429|ref|ZP_04656266.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|137028|sp|P22493|UMUD_SALTY RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD'
 gi|154413|gb|AAA27247.1| putative [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420532|gb|AAL20908.1| error-prone repair: SOS-response transcriptional repressor
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|205328407|gb|EDZ15171.1| protein UmuD [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261247164|emb|CBG24987.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993990|gb|ACY88875.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158511|emb|CBW18021.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912988|dbj|BAJ36962.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|323130277|gb|ADX17707.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332988886|gb|AEF07869.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 139

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            +  +   L    P     +     FP+    + +   +    +  + +  +     K  
Sbjct: 1   MEFFRPTELREIIPLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAS 57

Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM       GD+L+++S+   + GD ++     G+   K L  R   ++ L+ +N  Y
Sbjct: 58  GDSMIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRLQLRP--TVQLIPMNGAY 114

Query: 203 PVDTVEMSD-IEWIARI 218
               V   D ++    +
Sbjct: 115 RPIPVGSEDTLDIFGVV 131


>gi|89256052|ref|YP_513414.1| prophage repressor protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|156502064|ref|YP_001428129.1| peptidase S24-like domain-containing protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|290954234|ref|ZP_06558855.1| prophage repressor protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312354|ref|ZP_06803139.1| prophage repressor protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143883|emb|CAJ79101.1| prophage repressor protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|156252667|gb|ABU61173.1| Peptidase S24-like domain protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 217

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                    T         +L +  +G        + P     + + +P+          
Sbjct: 63  PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           I       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 105 IPKNSFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN       +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209


>gi|322834782|ref|YP_004214809.1| LexA family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169983|gb|ADW75682.1| transcriptional repressor, LexA family [Rahnella sp. Y9602]
          Length = 202

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 48/178 (26%), Gaps = 3/178 (1%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  I      P+   I   L   +    +      +     E        + 
Sbjct: 8   QQEVYDLIRDHISTTGMPPTRAEIASRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G         E     +      + D   +    SM  +    
Sbjct: 68  LLMEEEEGLPLIGRVAAGEPLLAQQHIEGHYQIDPAMFKPSADFLLRVSGMSMRDIGILD 127

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           GD+L ++    V  G  ++ +    ++  K L  + G  + L+  N  +    V++ +
Sbjct: 128 GDLLAVHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GSVVQLLPENSEFQPIVVDLRE 183


>gi|145628369|ref|ZP_01784170.1| LexA repressor [Haemophilus influenzae 22.1-21]
 gi|145630492|ref|ZP_01786272.1| LexA repressor [Haemophilus influenzae R3021]
 gi|145634840|ref|ZP_01790548.1| LexA repressor [Haemophilus influenzae PittAA]
 gi|145638455|ref|ZP_01794065.1| LexA repressor [Haemophilus influenzae PittII]
 gi|145640833|ref|ZP_01796415.1| LexA repressor [Haemophilus influenzae R3021]
 gi|148826607|ref|YP_001291360.1| LexA repressor [Haemophilus influenzae PittEE]
 gi|148827939|ref|YP_001292692.1| LexA repressor [Haemophilus influenzae PittGG]
 gi|229844618|ref|ZP_04464757.1| LexA repressor [Haemophilus influenzae 6P18H1]
 gi|229845796|ref|ZP_04465908.1| LexA repressor [Haemophilus influenzae 7P49H1]
 gi|319775310|ref|YP_004137798.1| LexA repressor [Haemophilus influenzae F3047]
 gi|319897751|ref|YP_004135948.1| lexa repressor [Haemophilus influenzae F3031]
 gi|329122694|ref|ZP_08251272.1| LexA repressor [Haemophilus aegyptius ATCC 11116]
 gi|88911349|sp|Q4QME9|LEXA_HAEI8 RecName: Full=LexA repressor
 gi|166224570|sp|A5UDX6|LEXA_HAEIE RecName: Full=LexA repressor
 gi|166224571|sp|A5UHQ3|LEXA_HAEIG RecName: Full=LexA repressor
 gi|144980144|gb|EDJ89803.1| LexA repressor [Haemophilus influenzae 22.1-21]
 gi|144983882|gb|EDJ91324.1| LexA repressor [Haemophilus influenzae R3021]
 gi|145268006|gb|EDK08002.1| LexA repressor [Haemophilus influenzae PittAA]
 gi|145272784|gb|EDK12691.1| LexA repressor [Haemophilus influenzae PittII]
 gi|145274347|gb|EDK14211.1| LexA repressor [Haemophilus influenzae 22.4-21]
 gi|148716767|gb|ABQ98977.1| LexA repressor [Haemophilus influenzae PittEE]
 gi|148719181|gb|ABR00309.1| LexA repressor [Haemophilus influenzae PittGG]
 gi|229810800|gb|EEP46517.1| LexA repressor [Haemophilus influenzae 7P49H1]
 gi|229812332|gb|EEP48022.1| LexA repressor [Haemophilus influenzae 6P18H1]
 gi|301169468|emb|CBW29068.1| DNA-binding transcriptional repressor of SOS regulon [Haemophilus
           influenzae 10810]
 gi|309751590|gb|ADO81574.1| SOS-response transcriptional repressor LexA [Haemophilus influenzae
           R2866]
 gi|309973755|gb|ADO96956.1| SOS-response transcriptional repressor LexA [Haemophilus influenzae
           R2846]
 gi|317433257|emb|CBY81632.1| LexA repressor [Haemophilus influenzae F3031]
 gi|317449901|emb|CBY86113.1| LexA repressor [Haemophilus influenzae F3047]
 gi|327472568|gb|EGF17998.1| LexA repressor [Haemophilus aegyptius ATCC 11116]
          Length = 207

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + + R  E   + P  + ++R+ G              E   +  S +
Sbjct: 1   MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +I+                             L         G    G    G    
Sbjct: 54  GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K    SM  +    GD+L ++S   V  G  ++ + 
Sbjct: 94  AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  I L + N  +    V + +
Sbjct: 154 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 187


>gi|291551243|emb|CBL27505.1| SOS regulatory protein LexA [Ruminococcus torques L2-14]
          Length = 191

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 37/213 (17%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +I + I+    ++  +PS   +A   G+   +  K                 + ++    
Sbjct: 3   EIKKYIEDYYLQNRQSPSTTKIAEAVGIARGTAYKY----------------LVEMAEKN 46

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                          + + ++ +   +             S  +   N    V +P    
Sbjct: 47  MIEYDGQEIRTNVTRKYSGEQTQTPIV-------GSIPCGSPQYEEENIEEYVSLPTAIF 99

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                   +      +    SM       GD++++   ++ N GD ++          K 
Sbjct: 100 G-------KGDFFILRASGQSMIEAGIDDGDLVVVKKQVEANEGDIVVALVD-NQNTLKR 151

Query: 185 LISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                  + I L   N       V   +     
Sbjct: 152 YFRDDENKKIILHPENKKMKDIIV--DECCIQG 182


>gi|318042158|ref|ZP_07974114.1| SOS-response transcriptional repressor LexA [Synechococcus sp.
           CB0101]
          Length = 205

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 45/189 (23%), Gaps = 6/189 (3%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I      PS   + + +   +    Q              +E +   L 
Sbjct: 13  QQELYDWLASFIGEHRHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 72

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                + G    G    G    T      R     +   +           SM+      
Sbjct: 73  LLGELTPGIPVLGAVAAGGLVETFDDVSERIDLAPVLETRG-LFALTVNGDSMVDAHIAD 131

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++++    +      G  +           K      G  + L + N  Y    ++  
Sbjct: 132 GDVVLMEPVPEPSRLRNGTIVSALVPGSGTTLKHFHR-EGSQVRLEAANPAYEPIVLDAE 190

Query: 211 DIEWIARIL 219
            +    +++
Sbjct: 191 QVAVQGKLV 199


>gi|221067974|ref|ZP_03544079.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1]
 gi|221068037|ref|ZP_03544142.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1]
 gi|220712997|gb|EED68365.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1]
 gi|220713060|gb|EED68428.1| peptidase S24 and S26 domain protein [Comamonas testosteroni KF-1]
          Length = 153

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR-----RGR 191
               +    SMLP +  GD + ++  +    GD +  K  + +   K    R        
Sbjct: 57  AFFLEIDGDSMLPEFNPGDRVRIDPEVTPRPGDFVAAKNSSEESTFKKYRVRGIDLTGKE 116

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIA 216
             +L+ LN  YPV   +  +++ I 
Sbjct: 117 IFELVPLNDNYPVMRSDEHELKVIG 141


>gi|87125458|ref|ZP_01081303.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           RS9917]
 gi|86166758|gb|EAQ68020.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           RS9917]
          Length = 209

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 47/192 (24%), Gaps = 8/192 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I   +  PS   + + +   +    Q              +E +   L 
Sbjct: 17  QQELYDWLADYIGSHHHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 76

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153
                + G    G    G    T    + R     +   +           SM       
Sbjct: 77  LLGGMASGIPVLGAVAAGGLVETFDDVQERLDLVPLLETRG-LFALTVNGDSMVEAHIAD 135

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++++           G  +           K      G ++ L + N  Y    +   
Sbjct: 136 GDVVLMEPVSDPSRLRQGVIVSALVPGSGTTLKHFHR-EGGTVRLEAANPAYAPIELPAD 194

Query: 211 DIEWIARI--LW 220
            ++   ++  +W
Sbjct: 195 QVQVQGKLMAVW 206


>gi|169796760|ref|YP_001714553.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii AYE]
 gi|169149687|emb|CAM87578.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii AYE]
          Length = 249

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 65/231 (28%), Gaps = 32/231 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I +  E   L  + LAR     P +  K            P+ E++  I      +  
Sbjct: 5   SRIRQKLEEKKLRAADLARATKKSPVAVKKWLDGTSV-----PTAENLKVIAKFLGVSDD 59

Query: 71  QLLDLPFSDGRTTEKKE----------KEIPLLYFPPSGSGGFFDSGVFPT--------- 111
            LL     +  +    +          ++  +     +          FP          
Sbjct: 60  WLLYGGPVEQESNNLPQLNVINIEAFKQKYNIPDSEDAVKFVQTSDKPFPIQKRYVPVKA 119

Query: 112 -------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                  G   +          +   +    +    K    SM P  R G  ++ +    
Sbjct: 120 YSKMGMDGYFTDMGYEGNAGDGYVPTHTAGPRAYGIKGTGDSMFPAIRNGWYVVCDPDAD 179

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   + + +  + G    K  +   G  + L+++N      + +M ++E I
Sbjct: 180 LVPTEFVQVCLKDGRCTIKEFVGINGGVLSLLAVNGG-ERLSFDMDEVESI 229


>gi|118430728|ref|YP_873953.1| phage repressor protein [Staphylococcus phage phiNM]
 gi|151222024|ref|YP_001332846.1| phage repressor [Staphylococcus aureus subsp. aureus str. Newman]
 gi|297246884|ref|ZP_06930667.1| phage repressor [Staphylococcus aureus A8796]
 gi|304379058|ref|ZP_07361805.1| phage repressor protein [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|104641620|gb|ABF73034.1| phage repressor protein [Staphylococcus aureus phage phiNM1]
 gi|150374824|dbj|BAF68084.1| phage repressor [Staphylococcus aureus subsp. aureus str. Newman]
 gi|297176278|gb|EFH35562.1| phage repressor [Staphylococcus aureus A8796]
 gi|304342293|gb|EFM08185.1| phage repressor protein [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
          Length = 212

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 26/216 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  +   + L+   +A+K  +   +    +    E     P    + KI +  N +   L
Sbjct: 7   IKEIRLNNRLSKVEMAKKLDVSEGTIRMWESGRTE-----PRMGMVEKISSLFNVSKGYL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L             E E+P      +G+                 + VP           
Sbjct: 62  LGEIEEIVLPEFDSEIEVPYFGKVSAGNFEEVAIDN-------EKLKVPPFAFNGRK--- 111

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             ++    K    SM  +   G  +I++        ++N  D L+++   G+   K +  
Sbjct: 112 -PSECIALKINGDSMNKILANGSYIIVHDYRKSCDHKLNSNDILVLR-LGGEYTVKRVRR 169

Query: 188 RRGR-SIDLMSLNCCYPVDTVEM---SDIEWIARIL 219
              +  +D  S +  +  ++ ++    +IE I +++
Sbjct: 170 TETKLHLDPASYSDEFKTNSYDLDSIDEIEVIGKVI 205


>gi|116072386|ref|ZP_01469653.1| Peptidase S24, LexA repressor [Synechococcus sp. BL107]
 gi|116064908|gb|EAU70667.1| Peptidase S24, LexA repressor [Synechococcus sp. BL107]
          Length = 209

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 51/191 (26%), Gaps = 8/191 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
                      I      PS   + +   L +      +L  L      T ++ +     
Sbjct: 15  QQELYDWLADYIGTHRHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 74

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151
           L    + S G    G    G   +T    +       +   +           SM+    
Sbjct: 75  LLGDVAASVGIPVLGAVAAGGLVDTFDDVQDHLDLAPVLETRG-LFALTVNGDSMVDAHI 133

Query: 152 RKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
             GD++++   I       G  +           K    +   ++ L + N  Y    + 
Sbjct: 134 ADGDVVLMEPVIDPQRLRDGTVVSALVAGSGTTLKHFHRQGP-TVVLEAANPAYSPIELP 192

Query: 209 MSDIEWIARIL 219
              ++   +++
Sbjct: 193 AEQVQVQGKLV 203


>gi|68249346|ref|YP_248458.1| LexA repressor [Haemophilus influenzae 86-028NP]
 gi|260579840|ref|ZP_05847670.1| LexA repressor [Haemophilus influenzae RdAW]
 gi|260583155|ref|ZP_05850935.1| LexA repressor [Haemophilus influenzae NT127]
 gi|68057545|gb|AAX87798.1| LexA repressor [Haemophilus influenzae 86-028NP]
 gi|260093124|gb|EEW77057.1| LexA repressor [Haemophilus influenzae RdAW]
 gi|260093773|gb|EEW77681.1| LexA repressor [Haemophilus influenzae NT127]
          Length = 209

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + + R  E   + P  + ++R+ G              E   +  S +
Sbjct: 3   MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 55

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +I+                             L         G    G    G    
Sbjct: 56  GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVAAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K    SM  +    GD+L ++S   V  G  ++ + 
Sbjct: 96  AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  I L + N  +    V + +
Sbjct: 156 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 189


>gi|293394069|ref|ZP_06638372.1| LexA repressor [Serratia odorifera DSM 4582]
 gi|291423431|gb|EFE96657.1| LexA repressor [Serratia odorifera DSM 4582]
          Length = 202

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++++ I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTTRQQEVYDLIRDHISQTGMPPTRAEIALRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIVSGASRGIRLLMEDEDGLPLIGRVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSLFKPNADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L    G  ++L+  N  +    V++  
Sbjct: 150 -EDEVTVKRLKKH-GNVVELLPENSEFQPIVVDLRQ 183


>gi|332288839|ref|YP_004419691.1| LexA repressor protein [Gallibacterium anatis UMN179]
 gi|330431735|gb|AEC16794.1| LexA repressor protein [Gallibacterium anatis UMN179]
          Length = 213

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 34/218 (15%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +++++ + +  E+  + P  + +A++ G                R+   + E +  +  
Sbjct: 13  QQQVFDFVKQHLEQTGMPPTRAEIAKQLGF---------------RSANAAEEHLKALAR 57

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                              T +  + I  +        G    G    G         E 
Sbjct: 58  K----------GVIEIVSGTSRGIRLIGEVEAANDEQEGLPLVGRVAAGEPILAEEHIEA 107

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +        D   K Q  SM  +    GD+L ++S   V  G  ++ +     +  
Sbjct: 108 MYQVDVNMFKPKADFLLKVQGMSMKDIGILDGDLLAVHSTKDVRNGQVVVARIGDN-VTV 166

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
           K    + G  + L   N       V++S    +IE IA
Sbjct: 167 KRFERK-GNMLYLHPENSELSPIVVDLSQENVEIEGIA 203


>gi|213021398|ref|ZP_03335845.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 105

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
              +      + D   +    SM  +    GD+L ++    V  G  ++ +    ++  K
Sbjct: 1   YQVDPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID-DEVTVK 59

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            L  + G  ++L+  N  +    V++ +
Sbjct: 60  RLKKQ-GNKVELLPENSEFTPIVVDLRE 86


>gi|261867094|ref|YP_003255016.1| LexA repressor [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412426|gb|ACX81797.1| LexA repressor [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 207

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 35/224 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   +++++ +    E   + P+    +A +        +             +++
Sbjct: 1   MKPLTARQQEVYDFLKHHLETTGMPPT----RAEISK------ELGFRSPNAAEEHLKAL 50

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K                      +        LL        G    G    G      
Sbjct: 51  AK---------------KGVIEIVSGTSRGIRLLLEDHSQEEAGLPLIGRVAAGEPILAE 95

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E     +        D   K    SM  +    GD+L ++S   V  G  ++ +   
Sbjct: 96  QHIEGTYHVDPNMFKPQADFLLKVYGQSMKDVGILDGDLLAVHSTKDVRNGQIVVARI-E 154

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216
            ++  K L  + G  + L + N  +    V ++     +IE IA
Sbjct: 155 DEVTVKRLERK-GSVVYLHAENEEFSPIVVNLTQPTHFEIEGIA 197


>gi|302342949|ref|YP_003807478.1| peptidase S24/S26A/S26B, conserved region [Desulfarculus baarsii
           DSM 2075]
 gi|301639562|gb|ADK84884.1| Peptidase S24/S26A/S26B, conserved region [Desulfarculus baarsii
           DSM 2075]
          Length = 142

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 3/124 (2%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKG 154
                      GV   G     V   E           + +    + + TSM+      G
Sbjct: 11  IDIQDVEIPFMGVVAAGMPIEAVP-EERAIAIPKDMVGRFRTFALEVRGTSMIDEHIAPG 69

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           D++++        G  ++      D+  K     R   I L   N       +   D+  
Sbjct: 70  DVIVVEERQTAENGQMVVALINQSDVTLKKFYLERD-HIRLQPANPGMEPIILRHEDVRV 128

Query: 215 IARI 218
           +  +
Sbjct: 129 LGVV 132


>gi|324993047|gb|EGC24967.1| phage transcriptional repressor [Streptococcus sanguinis SK405]
 gi|324995644|gb|EGC27556.1| phage transcriptional repressor [Streptococcus sanguinis SK678]
 gi|325689837|gb|EGD31841.1| phage transcriptional repressor [Streptococcus sanguinis SK115]
 gi|327461315|gb|EGF07646.1| phage transcriptional repressor [Streptococcus sanguinis SK1]
 gi|327473953|gb|EGF19366.1| phage transcriptional repressor [Streptococcus sanguinis SK408]
 gi|327489174|gb|EGF20967.1| phage transcriptional repressor [Streptococcus sanguinis SK1058]
 gi|332366568|gb|EGJ44313.1| phage transcriptional repressor [Streptococcus sanguinis SK1059]
          Length = 257

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +        L+R+ G+  ++     +         P   ++ KI    +  
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFDVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111
           + ++           ++      +                        +        FP 
Sbjct: 74  VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +    + + +     +  +  +   D     +  S+ P Y   D + L         
Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|183220706|ref|YP_001838702.1| LexA repressor [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910807|ref|YP_001962362.1| LexA repressor [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|229621214|sp|B0SFV4|LEXA_LEPBA RecName: Full=LexA repressor
 gi|229621215|sp|B0SPA2|LEXA_LEPBP RecName: Full=LexA repressor
 gi|167775483|gb|ABZ93784.1| Repressor lexA [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779128|gb|ABZ97426.1| LexA repressor [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 202

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 53/224 (23%), Gaps = 33/224 (14%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + K+  + + I          P+   +  + G+                       
Sbjct: 1   MKDLTEKQEFVLQYISDTVREKGFPPTIREIGDQFGITAK-----------------GAY 43

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K +                +       E  +      P        + +    N   
Sbjct: 44  DHLKAIEKKGYIRTSKNQSRAIELLKGNADEALLVRASGIPLLGQVAAGAPILAEENIEE 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
            + VP+         A +      + +  SM       GDI I+        G+ ++   
Sbjct: 104 YIAVPDDL-------ATKPGTFALRVKGDSMVEAGISDGDIAIIQKKDTARNGEIVVALI 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   KV        I L   N        + +    I +++
Sbjct: 157 -ENEATLKVFFKEPD-MIRLEPRNAKLKPIRTKKA--TIIGKLI 196


>gi|256822330|ref|YP_003146293.1| peptidase S24 and S26 domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795869|gb|ACV26525.1| peptidase S24 and S26 domain protein [Kangiella koreensis DSM
           16069]
          Length = 140

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 6/109 (5%)

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
           G     +   +  S    +          K +  SM+     + DIL+++ ++     D 
Sbjct: 29  GVVDEHME--DTLSLDQLLIQNPATTFFAKVEGDSMIGAGIFQNDILVVDRSLTAKDKDV 86

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++      +   K L      ++ L + N  Y    +       I  ++
Sbjct: 87  VVAMLD-NEFTVKRLC--TSGALRLQAENPAYQDILITGESELVIWGVV 132


>gi|168206983|ref|ZP_02632988.1| LexA repressor [Clostridium perfringens E str. JGS1987]
 gi|170661637|gb|EDT14320.1| LexA repressor [Clostridium perfringens E str. JGS1987]
          Length = 368

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 36/241 (14%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +     +    +DR   R N T   L     L     N+         +R    + + K 
Sbjct: 128 SKLRIDRTLTELDRAINRANRTKEDL----NLSLRRVNRLYDDLKRTNSREERFDKLVKQ 183

Query: 62  LAATNETICQLLDLPFSDGR---------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPT- 111
           L   ++ +    +    D            + ++ ++  +L F              P  
Sbjct: 184 LDDISKNLNPNFENDIIDMTDIEISTDLVPSVEELRKNKILEFKNKSKESNSKYIRIPIL 243

Query: 112 ------------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
                        N  + + +P       G ++        K +  SM  L+  G+++I+
Sbjct: 244 GVVAAGNPSYACENILDNIYLP------KGNFSSSFTYFGLKVKGDSMNELFEDGEVIII 297

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIAR 217
                V+  D ++      +   K         I+L+    N  +      + +++ I  
Sbjct: 298 RKTSLVHNDDIVIAF-VGDEATCKEYYYDGNN-INLIPHSTNSKHKKQVYSVDEVKIIGL 355

Query: 218 I 218
           +
Sbjct: 356 V 356



 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 22/217 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +K+ + I +  + +NLT   LA K  +  +  +  +    E     P+   ++      N
Sbjct: 4   EKLAKIIKKYRKDNNLTQQQLAEKLDISRSVLSYYENTNAE-----PNLYFLYNFSRLLN 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            TI +L+D        +  +  +        S +            +    +   +    
Sbjct: 59  CTIDELVDSADIFDDFSLSQTPQNEFEPIKKSKTKV--KEDTLNINDGQKFLKEIKNMLN 116

Query: 127 HNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQVNCGDRLL-------IKPRT 177
                  +   ++ +   T         + +    +  + +   +RL         +   
Sbjct: 117 KVKKTYDELNYSKLRIDRTLTELDRAINRANRTKEDLNLSLRRVNRLYDDLKRTNSREER 176

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
            D + K L            LN  +  D ++M+DIE 
Sbjct: 177 FDKLVKQLDDISKN------LNPNFENDIIDMTDIEI 207


>gi|254514471|ref|ZP_05126532.1| LexA repressor [gamma proteobacterium NOR5-3]
 gi|219676714|gb|EED33079.1| LexA repressor [gamma proteobacterium NOR5-3]
          Length = 200

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 40/217 (18%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I R      + P  + +AR  G    +                + E
Sbjct: 1   MLKLTARQEQVLDVIRRHIGDTGMPPTRADIARDLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                                      G    G    G    
Sbjct: 45  EHLKALARKGAIEIIPGASRGIRLPE-----------------DVGLPIIGRVAAGQPIL 87

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + Q  SM+ +    GD+L ++S      G  ++ + 
Sbjct: 88  ATENVEEHCAVDPSLFHPPADYLLRVQGDSMIKVGIHDGDLLAVHSTPVAENGAIVVARI 147

Query: 176 RTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L   R  R + L+  N       V+++ 
Sbjct: 148 D-DEVTVKRLKRGRDKRHLQLLPENDALSPIDVDLAQ 183


>gi|198283651|ref|YP_002219972.1| transcriptional repressor, LexA family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665531|ref|YP_002426282.1| LexA repressor [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|226694230|sp|B5EJ91|LEXA_ACIF5 RecName: Full=LexA repressor
 gi|226736095|sp|B7JBX0|LEXA_ACIF2 RecName: Full=LexA repressor
 gi|198248172|gb|ACH83765.1| transcriptional repressor, LexA family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517744|gb|ACK78330.1| LexA repressor [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 205

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 53/191 (27%), Gaps = 8/191 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
            +      R  +   +  P+   + +     +    +      +       +      + 
Sbjct: 8   QSEILAWIRARMAEDSLPPTRAELMRAFDFRSPNAAESHLRVLARKGYILLQSGTARGIR 67

Query: 95  F-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YR 152
                   G    G    G         E + P +        D   + Q  SM      
Sbjct: 68  LCASEEETGLPLIGRVAAGQPMLAEEFREGQLPVDPKLFSPGADYLLRVQGMSMRDAGIL 127

Query: 153 KGDILILNSAI--QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM- 209
            GDIL +       +  G  ++ +   G++  K      G+ + L+  N  +   +V++ 
Sbjct: 128 DGDILAVRHDASLTLQDGQMVVARVN-GEVTVKRWKRD-GKQVWLLPENPDFSPISVDLQ 185

Query: 210 -SDIEWIARIL 219
              +     ++
Sbjct: 186 RDSLTIEGVVV 196


>gi|123966252|ref|YP_001011333.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200618|gb|ABM72226.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9515]
          Length = 143

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E    +  + +        + +  SM+    +  D++I++ ++    G+ ++     
Sbjct: 36  YTEENIDLNEHLISNPFSTFFLRVKGDSMINSGIKDKDLIIVDKSLTAKPGNIIIAMID- 94

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           G+   K L S R   + L + N  YP  +     DI+    ++
Sbjct: 95  GEFTIKRL-SIRNNELYLKAENHNYPDFSFRNHVDIQIWGVVI 136


>gi|330985166|gb|EGH83269.1| repressor protein cI [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 279

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 57/210 (27%), Gaps = 14/210 (6%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
              L    +A + G+ P +             ++ S  ++ ++L                
Sbjct: 68  ELKLNKRKIADEIGVSPAAVAHYLSGVNALNVKFAS--ALARLLGEP-VDRFSPRLAAEI 124

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSPHNGIYAIQT 135
                      +  +  P   +  +        G    +     +       +       
Sbjct: 125 ADLAATTDHSNVTPMVQPRREAREYPLITWVDAGAGIESAGSYPLGISDEWLSSTENAGP 184

Query: 136 QDTRHKTQDTSML----PLYRKGDILILNSAI-QVNCGDRLLIKPR-TGDIVAKVLISRR 189
                + +  SM     P + +G  +++      +  G   + +   TG+   K  I   
Sbjct: 185 SGYWLRVKGKSMTSDTPPTFPEGTPILVRPEGFDIISGKFYVARHTVTGETTFKQYI-LD 243

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                L+ LN  Y    VE  D E I R +
Sbjct: 244 AGVGYLVPLNQAYQTVQVE-GDWEIIGRAI 272


>gi|197122553|ref|YP_002134504.1| transcriptional repressor, LexA family [Anaeromyxobacter sp. K]
 gi|229495163|sp|B4UCX8|LEXA_ANASK RecName: Full=LexA repressor
 gi|196172402|gb|ACG73375.1| transcriptional repressor, LexA family [Anaeromyxobacter sp. K]
          Length = 230

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 20/231 (8%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTS-FNKSKRFGIEGR--NRWP 53
           M   +    ++   I    E H   P+   +     +  T+  N   +        +R P
Sbjct: 1   MEGLTDRQLEVLRFIASQIEDHGYPPTIREIGEALDIRSTNGVNDHLKALERKGYLSRDP 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
             + ++    AA         D   +         +    +   P          +    
Sbjct: 61  VKSRALIPTSAAREALGGGGGDAGSNVVPLVRGPARPGSRMIEIPIVGRVAAGMPILAQE 120

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRL 171
              +TV V         +     +    + Q  SM+      GD + +   +  + G+ +
Sbjct: 121 RVEDTVQVDA------FLLGTNKKVYGLRVQGDSMIGDGILPGDYVFVKKQLNADDGEIV 174

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
           +      +   K +    G  +     N       V  SD      +  ++
Sbjct: 175 VAMID-DEATVKRVYF-EGDRVRFQPSNPRMAPIYVRHSDFRSTMILGVVV 223


>gi|323351709|ref|ZP_08087363.1| phage transcriptional repressor [Streptococcus sanguinis VMC66]
 gi|322122195|gb|EFX93921.1| phage transcriptional repressor [Streptococcus sanguinis VMC66]
          Length = 257

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +        L+R+ G+  ++     +         P   ++ KI       
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFEVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111
           + ++           ++      +                        +        FP 
Sbjct: 74  VEEIDPRYRLIADIPQRFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +    + + +     +  +  +   D     +  S+ P Y   D + L         
Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPTG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|125717860|ref|YP_001034993.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36]
 gi|125497777|gb|ABN44443.1| Transcriptional repressor, XRE family, putative [Streptococcus
           sanguinis SK36]
          Length = 257

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +        L+R+ G+  ++     +         P   ++ KI +     
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIASFFKVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--------FDSGVFPTGNKWNTVGV 120
           I ++           ++      +                             K +    
Sbjct: 74  IEEIDPRYRLIADIPQQFPDLNRIYQQLDQNRQEQGLKLLEASLTEQETKASLKDDYFPY 133

Query: 121 ------------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
                       PE          I   D     +  S+ P Y   D + L         
Sbjct: 134 LVYENYYLSQHKPEQADLVWLDREID-YDIALWVRTDSLEPKY-PRDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
             +      G  + K + +     I L+SLN  Y    +    + + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHGEEPKLIGRVM 242


>gi|104781524|ref|YP_608022.1| LexA repressor [Pseudomonas entomophila L48]
 gi|95110511|emb|CAK15219.1| putative LexA repressor 2 [Pseudomonas entomophila L48]
          Length = 202

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + + K+  I + I          PS   +A + G    S  +                
Sbjct: 1   MDNLTPKRRAILDFIRERITDQAQPPSLADIAERFGFASRSVAR---------------- 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K + A  +     +    + G    +  +   +L  P  G          P G   +
Sbjct: 45  ---KHITALCQAGYIDVTPNQARGIRLAEPLRRPEILELPVLGQVA----AGAPIGPDLD 97

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
                  +   +     +T D   K +  SM       GD++ +        G  ++ + 
Sbjct: 98  IHE----QLLLDPSLFRRTPDYLLKVRGDSMVDDGIFDGDLVGIRQQGDARDGQIVVARL 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             G++  K L   R     L+  N  Y    V    
Sbjct: 154 D-GEVTIKRLQRTREG-YRLLPRNPHYQPIDVGPER 187


>gi|56477174|ref|YP_158763.1| LexA repressor [Aromatoleum aromaticum EbN1]
 gi|71648697|sp|Q5P4A1|LEXA_AZOSE RecName: Full=LexA repressor
 gi|56313217|emb|CAI07862.1| LexA-SOS-response transcriptional repressor (RecA-mediated
           autopeptidases) [Aromatoleum aromaticum EbN1]
          Length = 203

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 9/187 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   R  +E   R P+   I       +    +      +       +E     + 
Sbjct: 12  QAEILDFIRHTVESEGRPPTRAEICTAFGFRSPNAAETHLRTLAAKGAIVLEEGRARGIR 71

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
              +   G    G    G     V   E R   +        D   + +  SM       
Sbjct: 72  LVEAL--GLPLVGHVAAGRPMLAVEHIEARYQIDSALFSPRADYLLRVRGMSMRDAGIID 129

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--- 210
            D+L ++   QV  G  ++ +    ++  K         + L+  N  +    V+     
Sbjct: 130 SDLLAVHRTPQVRAGQVVVAR-LEDEVTVKTFTREGP-IVRLLPANPDFEPIVVDTRHQA 187

Query: 211 -DIEWIA 216
            DIE IA
Sbjct: 188 LDIEGIA 194


>gi|289807247|ref|ZP_06537876.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 102

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
           +      + D   +    SM  +    GD+L ++    V  G  ++ +    ++  K L 
Sbjct: 1   DPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID-DEVTVKRLK 59

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSD 211
            + G  ++L+  N  +    V++ +
Sbjct: 60  KQ-GNKVELLPENSEFTPIVVDLRE 83


>gi|187931404|ref|YP_001891388.1| prophage repressor protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712313|gb|ACD30610.1| prophage repressor protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 217

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRVGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                    T         +L +  +G        + P     + + +P+          
Sbjct: 63  PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN       +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209


>gi|331001378|ref|ZP_08325001.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
           11859]
 gi|329568600|gb|EGG50403.1| peptidase S24-like protein [Parasutterella excrementihominis YIT
           11859]
          Length = 218

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 7/169 (4%)

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+ +  +            +L             +I +    P+             G  
Sbjct: 45  TDKLVPVFKQLGGAKWLRCELERVAEPARTLDTDQILVPAMNPTHLSIPVYECGVQAGFP 104

Query: 115 WNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
                  +     +  + +             SM L    +GD+L+++ + +   GD ++
Sbjct: 105 SPAESYIDKTLDLNEYLVSNPASTFCVYVTGDSMDLAGMDEGDLLVVDRSPEPKNGDIVI 164

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPVD-TVEMSDIEWIARI 218
                 +   K  +    + + L+    N  Y      +  +  +I  +
Sbjct: 165 -MSINNEFTVKRYMKD-DKGLRLLPESSNPIYKPILPKDYDEWRFIGVV 211


>gi|318041288|ref|ZP_07973244.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CB0101]
          Length = 146

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        +  +    +     +    SM+    + GD+L+++ +++   G  ++
Sbjct: 33  ADDYID--AGIDLNEALIRHPSSTFFLRVSGDSMIDAGIQHGDLLVVDRSLEPRPGLIVV 90

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G    K L+      + L + N  YP   +    D++ 
Sbjct: 91  AVLD-GAFTLKRLVRYH-GRLRLEAANSAYPPLELHQCGDVQI 131


>gi|167627547|ref|YP_001678047.1| prophage repressor protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597548|gb|ABZ87546.1| prophage repressor protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 217

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQVELAQKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLEDNYY 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            +       T+      +P+L +  +G        + P     + + +P           
Sbjct: 63  PND------TSIVAIANVPVLSYVQAGEFTESQESIDP----IDYLQIPHSL-------- 104

Query: 133 IQTQDTRHKTQDTSML----------P-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SML          P        +G+ ++++ +        D++++  
Sbjct: 105 VPKNGFSLRVQGESMLYDSSESQLLSPKYAKYTLYEGENILVDPSEISPQNLVDKIVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN  +    +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPTDAVIIGRVV 209


>gi|15801531|ref|NP_287548.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 EDL933]
 gi|189402521|ref|ZP_02783039.2| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4401]
 gi|189406246|ref|ZP_02827173.2| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC508]
 gi|209400263|ref|YP_002270589.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4115]
 gi|217329755|ref|ZP_03445833.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. TW14588]
 gi|254793132|ref|YP_003077969.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226559|ref|ZP_05940840.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259495|ref|ZP_05952028.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. FRIK966]
 gi|12515039|gb|AAG56160.1|AE005346_7 putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EDL933]
 gi|189355076|gb|EDU73495.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4401]
 gi|189375812|gb|EDU94228.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC508]
 gi|209161663|gb|ACI39096.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4115]
 gi|217317247|gb|EEC25677.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. TW14588]
 gi|254592532|gb|ACT71893.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. TW14359]
          Length = 212

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 62/208 (29%), Gaps = 21/208 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT- 65
           + I E I +     NL    L    G    S ++    G    +R+ S  S+ KIL    
Sbjct: 4   QTISERITQRMHALNLKGKDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILKVNE 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           N  +             +    K +PLL    + S               + +    I S
Sbjct: 62  NWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS-------------DYMKNSSITS 108

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
               +  I         +  SM           G  + ++    V  G+ +L  P+    
Sbjct: 109 CVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRIVQPGNIVLALPKGTTT 168

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                +   G  I L+  N  YP   ++
Sbjct: 169 PVIRKLEIEGPDILLVPTNPRYPSIMLD 196


>gi|220906662|ref|YP_002481973.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC
           7425]
 gi|219863273|gb|ACL43612.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC
           7425]
          Length = 209

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 60/227 (26%), Gaps = 35/227 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   K++++ +    +RH   PS   + +   L   +  +S+             +
Sbjct: 1   MQPLTDPQKQLFDWLVDYIDRHQYAPSIRQMMQAMDLKSPAPVQSR------------LD 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K                        +  + +           G    G    G    
Sbjct: 49  HLRK-------------KGYIDWKDGQARTIRILQHPNGKSGQFEGIPLMGAIAAGGLIE 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV---NCGDRLL 172
                  R     ++    Q    +    SM   L  +GDI+++           G  + 
Sbjct: 96  PYADSVERLDLGSLFNQP-QYFALRVTGDSMIEELITEGDIVVMQPVNDPSSLKNGTIVA 154

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                     K    + GR + L   N  Y    V  S +    +++
Sbjct: 155 ALVEGEGTTLKRFFRQ-GRQVTLQPGNPKYDPIKVTASKVRVQGKLV 200


>gi|241668114|ref|ZP_04755692.1| prophage repressor protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876649|ref|ZP_05249359.1| prophage repressor protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842670|gb|EET21084.1| prophage repressor protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 217

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQVELAQKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLEDNYH 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            +       T+      +P+L +  +G        + P     + + +P           
Sbjct: 63  PND------TSIVAIANVPVLSYVQAGEFTESQEIIDP----IDYLQIPHSL-------- 104

Query: 133 IQTQDTRHKTQDTSML----------P-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SML          P        +G+ ++++ +        D++++  
Sbjct: 105 VPKNGFSLRVQGESMLYDSSESQLLSPKYAKYTLYEGENILVDPSEISPQNLVDKIVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN  +    +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPTDAVIIGRVV 209


>gi|308185816|ref|YP_003929947.1| Repressor protein CI [Pantoea vagans C9-1]
 gi|308056326|gb|ADO08498.1| Repressor protein CI [Pantoea vagans C9-1]
          Length = 243

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 54/199 (27%), Gaps = 15/199 (7%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE-KKEKEIP 91
           +      K            P   ++  +       +  L                    
Sbjct: 44  ISTPGVWKWFNAQSV-----PDGGNLLALSQLLGVRVEWLQYGMEQPADPVTLSTFTGHK 98

Query: 92  LLYFPPSGSGGFFDSGVFPTGN----KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
            ++   S   G   +   P  +        +      +                    SM
Sbjct: 99  NVFRVDSLDIGQRSAAGLPARDEFVETIQAIEYGLDEARVLFNGRPAENIRLIAINSDSM 158

Query: 148 LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
              +   D L ++ ++++  GD + I      +  K L  +  + I ++S N  Y    +
Sbjct: 159 ADTFAPRDQLFVDISVRMFDGDGIYIFTLDEQLYLKRLQLQH-KKIAVISDNKRYETWYL 217

Query: 208 EMSDI---EWIARILWASQ 223
              D+   + +A+++  SQ
Sbjct: 218 NHDDVTSLKVLAKVIM-SQ 235


>gi|82524059|emb|CAJ18231.1| SOS-response transcriptional repressor [uncultured Bacteroidetes
           bacterium]
          Length = 145

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              + +    +  +          +    SM+      GDI +++ +++    D ++   
Sbjct: 32  EDYLHDSLDFNRDLIRHPEATFYGRVDGDSMVDAGICDGDIAVIDRSVEPQHNDVIV-AY 90

Query: 176 RTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILW 220
             G+   K L    +    I+L   N  +    ++ +D  E    ++W
Sbjct: 91  VNGEFTIKYLDLSHKEEGFIELRPANQNFKPIRIDANDKFEVWGVVVW 138


>gi|324990806|gb|EGC22741.1| phage transcriptional repressor [Streptococcus sanguinis SK353]
 gi|325687965|gb|EGD29985.1| phage transcriptional repressor [Streptococcus sanguinis SK72]
          Length = 257

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +        L+R+ G+  ++     +         P   ++ KI    +  
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFDVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111
           + ++           ++      +                        +        FP 
Sbjct: 74  VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +    + + +     +  +  +   D     +  S+ P Y   D + L         
Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|315226410|ref|ZP_07868198.1| SOS mutagenesis and repair protein UmuD [Parascardovia denticolens
           DSM 10105]
 gi|315120542|gb|EFT83674.1| SOS mutagenesis and repair protein UmuD [Parascardovia denticolens
           DSM 10105]
          Length = 137

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 2/102 (1%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                 S    +               SM       GD+LI++ ++     D ++     
Sbjct: 21  YFDGDFSFDENVIIHPDTTFIVTVAGDSMQGAGIFDGDLLIVDRSLPAQENDVVIAAID- 79

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G++  K L+  +  +  L   N  YP   +       I  ++
Sbjct: 80  GELTVKRLVIDQEGNPVLHPENPSYPDIHLYWEADALIWGVV 121


>gi|311746355|ref|ZP_07720140.1| transcriptional regulator [Algoriphagus sp. PR1]
 gi|311302506|gb|EFQ79223.1| transcriptional regulator [Algoriphagus sp. PR1]
          Length = 236

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 62/206 (30%), Gaps = 19/206 (9%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86
           +A +  +  T  +  +    E     P   ++ K+       + +LL+           +
Sbjct: 1   MADQLAVQRTMISAYEDGRSE-----PKLLTLKKLSDMLEVGVEELLEHDIEKLGRRAIQ 55

Query: 87  EKEIPLLYFP-PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-----TQDTRH 140
           ++++ +L     +                +               + +            
Sbjct: 56  KRKLNILTIATDANDNENITMVPQKASAGYLNGFADPEYIEELPQFHLPNLPKNATYRAF 115

Query: 141 KTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTGDIVAKVL--ISRRGRSIDLM 196
           +    SMLPL     ++   ++    +  G   ++  +T  +V K +         + L+
Sbjct: 116 ELAGDSMLPLIPGTIVIGEYVDQLTNIKSGKTYVLVTQTEGVVYKRVFNYLSENGKLFLV 175

Query: 197 SLNCCYPVDTVEMSDIEWIARILWAS 222
           S N  Y    V+  D+      +W S
Sbjct: 176 SDNEHYKPFEVKGEDVLE----VWES 197


>gi|332361394|gb|EGJ39198.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK1056]
          Length = 257

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 63/228 (27%), Gaps = 21/228 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI----------------EGRNRW 52
           I + +  + +        L+R+ G+  ++     +                   E +   
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTSLPIAANLEKIASFFEVEVKEID 78

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           P    I  I     +       L  +      K  +         +     +        
Sbjct: 79  PRYRLIADIPQQFPDLNRIYQQLDQNRQEQGLKLLEASLTEQETQASLKDDYFP-YLVYE 137

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           N + +   PE          I   D     +  S+ P Y +  + ++        G  + 
Sbjct: 138 NYYLSQHKPEQADLVWLDREID-YDIALWVRTDSLEPKYPRDSVALIEQTHFELAG-AIY 195

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 196 AIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|332298754|ref|YP_004440676.1| SOS-response transcriptional repressor, LexA [Treponema
           brennaborense DSM 12168]
 gi|332181857|gb|AEE17545.1| SOS-response transcriptional repressor, LexA [Treponema
           brennaborense DSM 12168]
          Length = 204

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 52/221 (23%), Gaps = 32/221 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++   I   +E ++  P+    A   G+   +                   
Sbjct: 1   MKELTDKQQQVLNFIRSYSEENSCPPTFRECAEHFGISLRAVQCHF-------------- 46

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                L                     + + ++   +   P          +    N   
Sbjct: 47  ---AALQKKGCLSQPDKRSRSIRVLIDDPESEKKAAVTRVPLLGTVAAGKPLLCEENLDG 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            V + E        Y         + +  SM+      GDI ++        G  ++   
Sbjct: 104 YVSLAEPFVRSGRTY------FALRVRGCSMINAGILDGDIAVIEQCETARNGQIVVAVL 157

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
               I  K         I L   N  +     +  D+  + 
Sbjct: 158 D-ESITLKRFYK-EACRIRLQPENPDFKPIYCQ--DVRVVG 194


>gi|255066373|ref|ZP_05318228.1| putative repressor protein [Neisseria sicca ATCC 29256]
 gi|255049253|gb|EET44717.1| putative repressor protein [Neisseria sicca ATCC 29256]
          Length = 213

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 8/163 (4%)

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            ++          L   P S   + + ++     L    +   G       P     + V
Sbjct: 47  RRLEEDYGMGPYYLDSTPNSPIGSDDDQQIRFERLNIEAACGNGI---ENLPAE-VVDYV 102

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            V  + +       + +       +  SM     +GD++ +++A+     D + +   + 
Sbjct: 103 NVSRLWAKDKFGGNL-SHIKIITARGDSMAGTIDEGDVIFVDTAVTEMVEDGVYLIHVSD 161

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARI 218
            + AK L       + ++S N  Y  +TV   ++  ++   +I
Sbjct: 162 GLRAKRLQRTVTGGVKILSDNKRYETETVEKHDLEQLKICGKI 204


>gi|237746242|ref|ZP_04576722.1| transcriptional activator-regulatory protein [Oxalobacter
           formigenes HOxBLS]
 gi|229377593|gb|EEO27684.1| transcriptional activator-regulatory protein [Oxalobacter
           formigenes HOxBLS]
          Length = 235

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 23/228 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++++ +A+   +++    P  L +  G    S +        G+ +    ++   + A  
Sbjct: 5   NERLSKALIARSKK----PVDLVKATGKSAASISGWLN----GQTKMIEADNAMLVCAFL 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT--GNKWNTVGVPEI 123
             +   L+      G   E        +          FD        G        PEI
Sbjct: 57  RISPWWLMFGKGKSGLEEELPTFAEQAVAIRNPDEEAVFDVLDVVAVCGPGRINPDYPEI 116

Query: 124 RS----PHNGIYAI------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                 P    Y +      Q Q       + SM+P  +  DIL +++++    G+ + I
Sbjct: 117 IRSIVMPITEAYNLIGTRNTQGQIKIITAGNDSMVPTIKPSDILFVDTSVTQYSGEAVYI 176

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARIL 219
               G+++ K L    G+ + + S N  Y       +  D + + +++
Sbjct: 177 LVHGGELICKRLSLL-GKDLIVSSDNKFYGSWNWKDKPDDTQIVGKVI 223


>gi|86149763|ref|ZP_01067992.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86151693|ref|ZP_01069907.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85839581|gb|EAQ56841.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85841322|gb|EAQ58570.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|313116387|gb|ADR32195.1| phage repressor protein, putative [Campylobacter jejuni]
          Length = 224

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 27/196 (13%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           + P + +  +             E + KI    N ++  +        R  +   +    
Sbjct: 29  IKPNTLSTWRTRNTIP------YELLLKISKEQNISLDSIFFGK---MRINDDNLQLRYY 79

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT--QDTRHKTQDTSMLPL 150
                +   G  +S +           +   +        +    +    K    SM P 
Sbjct: 80  TDVAAAAGYGAINSKL-------EYTEIVISKKFACEALGLPPLTRLDIIKVIGDSMEPF 132

Query: 151 YRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVD 205
              GD++ ++ +      V  GD ++     G+I  K L+ +     I L S+N  Y   
Sbjct: 133 IHNGDVIAVDVSKNKLELVKNGDIVV-INLDGEIYCKKLLKQPFVNEIVLSSMNSFYKDI 191

Query: 206 TVEMSDI---EWIARI 218
            V +  I   E I  +
Sbjct: 192 VVNIDQISCAEIIGVV 207


>gi|311234974|gb|ADP87828.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio vulgaris
           RCH1]
          Length = 201

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        ++ I          +    SML      GD+L+++ A+    G R++
Sbjct: 92  ADDYID--RSLDLNDHIVKHPAATFYVRASGESMLGAGVHDGDLLVVDRALDPRPG-RVV 148

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218
           I    G++  K L+   G  + L   N  YP   +    D+E    +
Sbjct: 149 IAAVDGELTVKRLVR-EGGRLLLAPENAAYPPLDITGREDVEVWGVV 194


>gi|254448318|ref|ZP_05061780.1| protein ImpA [gamma proteobacterium HTCC5015]
 gi|198262185|gb|EDY86468.1| protein ImpA [gamma proteobacterium HTCC5015]
          Length = 160

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +      ++ + A        + Q  SM       GDIL+++ A     GD ++     G
Sbjct: 49  LESRLDLNDLLIARPAATFYLRYQGDSMRDAGLHPGDILVVDRAESPRHGDIVVAVVD-G 107

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++  K L   R   I L + +  +P   +       I  ++
Sbjct: 108 EMTCKRLY-NRAGLIRLDAEHPEFPNIELRQDSELVIWGVV 147


>gi|218960575|ref|YP_001740350.1| hypothetical protein CLOAM0236 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729232|emb|CAO80143.1| hypothetical protein CLOAM0236 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 254

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 67/232 (28%), Gaps = 29/232 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I   +  + +  NL       K G+   S ++ K        R+P  + + +++ A  
Sbjct: 16  NDIGSRLGMLIKSMNLKQYQFTEKFGISANSLDRYKNNE-----RFPDPQFLARLIDAGV 70

Query: 67  ETICQLLDLPFSDGRTTEK----------------KEKEIPLLYFPPSGSGGFFDSGVFP 110
                L            +                K   +         +  F       
Sbjct: 71  NVNWLLRGEGSMFILAPWELGDDIRTTKKVQIVDGKPVLVNDFDTTYIRTSLFPIVAEIS 130

Query: 111 TGNKWNTVG--VPEIRSPHNGIYAIQTQD--TRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            G+  +      P         Y     D     +    SM P    GDI+++   I  +
Sbjct: 131 AGSPMDVPEGIEPAESVEVPTRYIPYGTDSYVAFRINGQSMEPQILHGDIVLIKKQITWD 190

Query: 167 --CGDRLLIKPRTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMSDIEWI 215
              G    ++  TG I  K +     R  + L  LN  Y ++ ++    +W+
Sbjct: 191 GLDGKICAVRYETG-ITLKRIQYDEARRGVALQPLNKDYRIEFIDADQSQWL 241


>gi|120603324|ref|YP_967724.1| phage repressor [Desulfovibrio vulgaris DP4]
 gi|120563553|gb|ABM29297.1| putative phage repressor [Desulfovibrio vulgaris DP4]
          Length = 232

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 65/233 (27%), Gaps = 15/233 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------- 55
             +  +++E I         T   LA    +  +S + +KR      + +          
Sbjct: 1   MSTFDEVFERIKLATNTR--TQVELAEVLDIRQSSISDAKRRNSVPSDWYMKLFEKFGLN 58

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            + + K          Q  +   +       ++          S     F  G     N 
Sbjct: 59  PDWLKKGSGPMYLRTDQGYEPLDAPVAGLVLEDPARYGDPDAKSSVATVFAMGCAVDENG 118

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLI 173
            +       +      +A        +    +M P+  KG  + +++  + +  G+   +
Sbjct: 119 VSQPLTAIAKLAVPQSFAAPGTQ-IVRVDAGAMEPVIGKGAFVGIDTTQKNIVSGELYGV 177

Query: 174 KPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
                 +  K +          L + N  +P   + +         R++W  Q
Sbjct: 178 FMPFEGVAIKRVFLDAANARFILRTENPTHPEQYLPIDQHADRIFGRVVWVLQ 230


>gi|256851276|ref|ZP_05556665.1| LexA repressor [Lactobacillus jensenii 27-2-CHN]
 gi|260660700|ref|ZP_05861615.1| LexA repressor [Lactobacillus jensenii 115-3-CHN]
 gi|282931496|ref|ZP_06336999.1| repressor LexA [Lactobacillus jensenii 208-1]
 gi|297206143|ref|ZP_06923538.1| repressor lexA [Lactobacillus jensenii JV-V16]
 gi|256616338|gb|EEU21526.1| LexA repressor [Lactobacillus jensenii 27-2-CHN]
 gi|260548422|gb|EEX24397.1| LexA repressor [Lactobacillus jensenii 115-3-CHN]
 gi|281304369|gb|EFA96468.1| repressor LexA [Lactobacillus jensenii 208-1]
 gi|297149269|gb|EFH29567.1| repressor lexA [Lactobacillus jensenii JV-V16]
          Length = 211

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 63/218 (28%), Gaps = 29/218 (13%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAA 64
           KI E I    E     P+   +     L  T + +           R   T  +FK    
Sbjct: 11  KILEFIYNTVEDRGFPPTVREICEAVDLSSTSTVHGHLN-------RLVKTGYLFK---- 59

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                           +         P + +  + + G  D+ +         V  PE  
Sbjct: 60  -----DPSKPRALEITQEGLNALGVDPGIPYLGTVAAGDPDTALADDSGAEYYVQRPERF 114

Query: 125 SPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
              + +Y         K    SM        D++I+        GD ++          K
Sbjct: 115 DKRDPLY-------MLKVDGMSMIERGIYPDDLVIVRHQNVAAQGDLVVAYTENNGTTLK 167

Query: 184 VLISRRGRS-IDLMSLNCC-YPVDTVEMSDIEWIARIL 219
            L+  R    + L + N   YP + +  ++ +   +++
Sbjct: 168 ELVRDRSSKQLRLKAYNKEMYPDELLPDTNFKICGKVV 205


>gi|16760940|ref|NP_456557.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141368|ref|NP_804710.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56413091|ref|YP_150166.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180571|ref|YP_216988.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161613428|ref|YP_001587393.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552766|ref|ZP_02346517.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168234173|ref|ZP_02659231.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168239241|ref|ZP_02664299.1| protein UmuD [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168244852|ref|ZP_02669784.1| protein UmuD [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168259712|ref|ZP_02681685.1| protein UmuD [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168462457|ref|ZP_02696388.1| protein UmuD [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194443595|ref|YP_002041263.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194448647|ref|YP_002046049.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469768|ref|ZP_03075752.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194736107|ref|YP_002115033.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197264643|ref|ZP_03164717.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197362017|ref|YP_002141654.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200390791|ref|ZP_03217402.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|213053457|ref|ZP_03346335.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213420231|ref|ZP_03353297.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426671|ref|ZP_03359421.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580606|ref|ZP_03362432.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213622953|ref|ZP_03375736.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213648749|ref|ZP_03378802.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852544|ref|ZP_03382076.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224583505|ref|YP_002637303.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289806023|ref|ZP_06536652.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289823799|ref|ZP_06543411.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300632|pir||AF0755 UmuD protein (EC 3.4.21.-) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503237|emb|CAD05745.1| UmuD protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29136995|gb|AAO68559.1| UmuD protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56127348|gb|AAV76854.1| UmuD protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|62128204|gb|AAX65907.1| error-prone repair: SOS-response transcriptional repressors (LexA
           homologs, RecA-mediated autopeptidases) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161362792|gb|ABX66560.1| hypothetical protein SPAB_01144 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402258|gb|ACF62480.1| protein UmuD [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194406951|gb|ACF67170.1| protein UmuD [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456132|gb|EDX44971.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194711609|gb|ACF90830.1| protein UmuD [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195634087|gb|EDX52439.1| protein UmuD [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197093494|emb|CAR58954.1| UmuD protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|197242898|gb|EDY25518.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197288061|gb|EDY27448.1| protein UmuD [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|199603236|gb|EDZ01782.1| protein UmuD [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205322612|gb|EDZ10451.1| protein UmuD [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205331856|gb|EDZ18620.1| protein UmuD [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336376|gb|EDZ23140.1| protein UmuD [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205350842|gb|EDZ37473.1| protein UmuD [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|224468032|gb|ACN45862.1| UmuD protein [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|322616990|gb|EFY13898.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618230|gb|EFY15122.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625900|gb|EFY22719.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626352|gb|EFY23162.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632767|gb|EFY29512.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639109|gb|EFY35802.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640381|gb|EFY37038.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647214|gb|EFY43713.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648413|gb|EFY44866.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655546|gb|EFY51854.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660324|gb|EFY56562.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663005|gb|EFY59212.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668190|gb|EFY64349.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674051|gb|EFY70145.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675597|gb|EFY71671.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682992|gb|EFY79008.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686686|gb|EFY82664.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715047|gb|EFZ06618.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323195073|gb|EFZ80257.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197873|gb|EFZ82998.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204482|gb|EFZ89488.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207572|gb|EFZ92520.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210989|gb|EFZ95849.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217557|gb|EGA02276.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219153|gb|EGA03651.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227479|gb|EGA11641.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231579|gb|EGA15692.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236022|gb|EGA20101.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240592|gb|EGA24635.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245484|gb|EGA29484.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247602|gb|EGA31553.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254432|gb|EGA38248.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257758|gb|EGA41438.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263557|gb|EGA47080.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266258|gb|EGA49748.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270735|gb|EGA54174.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 139

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            +  +   L    P     +     FP+    + +   +    +  + +  +     K  
Sbjct: 1   MEFFRPTELREIIPLPFFSYLVPCGFPSPAA-DYIE--QRIDLNELLVSHPSSTYFVKAT 57

Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM       GD+L+++S+   + GD ++     G+   K L  R   ++ L+ +N  Y
Sbjct: 58  GDSMIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRLQLRP--TVQLIPMNGAY 114

Query: 203 PVDTVEMSD-IEWIARI 218
               V   D ++    +
Sbjct: 115 RPIPVGSEDTLDIFGVV 131


>gi|288928163|ref|ZP_06422010.1| UmuD protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330997|gb|EFC69581.1| UmuD protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 146

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            + E    ++ +          K +  SM       GDI +++ +I+   GD ++     
Sbjct: 34  YIHETLDFNHDLIRNPEATFYGKVEGDSMIEAGICNGDIAVIDRSIEPRDGDVVVG-YIN 92

Query: 178 GDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARILW 220
            +   K L    R+   I+L   N  +    ++  D  E    I+W
Sbjct: 93  EEFTIKYLDLSHRQEGYIELRPANSNFKPIRIDEDDAFEVWGVIVW 138


>gi|66044672|ref|YP_234513.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
 gi|257486996|ref|ZP_05641037.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|63255379|gb|AAY36475.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
 gi|68637933|emb|CAI36138.1| SOS-response transcriptional repressor [Pseudomonas syringae pv.
           phaseolicola]
 gi|330901393|gb|EGH32812.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330942040|gb|EGH44717.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 144

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165
             P G     V   E     + +  ++       K    SM+       D+++++ +   
Sbjct: 22  QVPAGFASPAVDYIEKHVSLDELAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRTA 81

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             G+ ++      + + K L       + L S N  YP   +   D   I  ++  S
Sbjct: 82  EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENSAYPSKHILEGDNLVIWGVVNYS 137


>gi|307610830|emb|CBX00445.1| phage repressor [Legionella pneumophila 130b]
          Length = 220

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 71/220 (32%), Gaps = 12/220 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARK-AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               ++I   I +  +   +T   LA +   L P   +  ++       R P       +
Sbjct: 1   MDIREQIGNRITKARKELGITIKELATRTVELSPARISNWEQGT-----RSPGPLEAKLL 55

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               N +   LL L  +      +  +         S         +       +T    
Sbjct: 56  ADQLNVSASYLLCLTDNPQGDLIQSYENKLRYIPILSMKEAPHAREILGQK---DTFAFE 112

Query: 122 EIRSPHNGIYAIQTQ-DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGD 179
           +     N   +I++        +D+SM P    GD++I++  +Q N G  + +       
Sbjct: 113 KTIVIDNFNLSIKSAVLFAASVEDSSMQPELNPGDMVIIDGQLQPNPGQYVLVYLTEKKQ 172

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
            V +      G    L+  +  +   ++ + ++ + I  +
Sbjct: 173 TVLRRYGEADGCLFQLLPNSELWATISIKQANEAQLIGVV 212


>gi|282159642|gb|ADA79033.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 217

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                    T         +L +  +G        + P     + + +P+          
Sbjct: 63  PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN       +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209


>gi|188992642|ref|YP_001904652.1| LexA repressor [Xanthomonas campestris pv. campestris str. B100]
 gi|167734402|emb|CAP52612.1| LexA repressor [Xanthomonas campestris pv. campestris]
          Length = 201

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176
           +G+         ++A++      + Q  SM+     +GD++ +  +     G  ++ +  
Sbjct: 95  IGLDRQLWLDRSLFALRPD-YLLQVQGDSMIDDGILEGDLVGVQRSSDARNGQIVVARVD 153

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            G+I  K L      +I L+  N  +    V   
Sbjct: 154 -GEITIKRLER-SADAIRLLPRNPAHAPIVVADD 185


>gi|224457600|ref|ZP_03666073.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371073|ref|ZP_04987075.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151569313|gb|EDN34967.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 221

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 12  LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                    T         +L +  +G        + P     + + +P+          
Sbjct: 67  PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 108

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 109 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 168

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN       +    +D   I R++
Sbjct: 169 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 213


>gi|134301558|ref|YP_001121526.1| peptidase S24-like domain-containing protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|254875293|ref|ZP_05248003.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|134049335|gb|ABO46406.1| Peptidase S24-like domain protein/prophage repressor protein
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|254841292|gb|EET19728.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 217

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                    T         +L +  +G        + P     + + +P+          
Sbjct: 63  PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 104

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 105 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN       +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209


>gi|56708449|ref|YP_170345.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670920|ref|YP_667477.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|56604941|emb|CAG46034.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321253|emb|CAL09417.1| prophage repressor protein [Francisella tularensis subsp.
           tularensis FSC198]
          Length = 221

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 12  LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                    T         +L +  +G        + P     + + +P+          
Sbjct: 67  PSDTSIITVTNVP------VLSYVQAGEFTESQENIDP----IDYLQIPDTL-------- 108

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 109 VPKNGFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 168

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN       +    +D   I R++
Sbjct: 169 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 213


>gi|307258155|ref|ZP_07539905.1| Possible LexA family repressor/S24 family protease [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863340|gb|EFM95273.1| Possible LexA family repressor/S24 family protease [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 107

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-- 190
           +       K +  SM P +  GDI+I++  ++ + G+ +       +   K         
Sbjct: 6   VSGDAFALKIKGDSMEPEFIAGDIVIIDPRVEPHAGEFVAAINGDYEATFKKYRPLEDLD 65

Query: 191 ----RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +  +L+ LN  +   +    +I  I  ++
Sbjct: 66  EYGRQHFELVPLNPDWHSMSSLKQEIRIIGTMV 98


>gi|304395409|ref|ZP_07377292.1| putative phage repressor [Pantoea sp. aB]
 gi|304356703|gb|EFM21067.1| putative phage repressor [Pantoea sp. aB]
          Length = 243

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 66/227 (29%), Gaps = 18/227 (7%)

Query: 11  EAIDRMAERHNL----TPSGLARKA---GLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +    E   +        +AR     G   ++    K F  +      +  ++ ++L 
Sbjct: 13  ARLIAACESAGIVGHGRNKQVARALQQQGCKISTPGVWKWFNAQSVPDGGNLLALSQLLG 72

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN----KWNTVG 119
                      +  S              ++   S   G   +   P  +        + 
Sbjct: 73  V--RVEWLQYGMEQSTEPVAMSTLTGQKSVFRIDSLDIGQRSAAGLPARDEFVETIQAIE 130

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                +                    SM   +   D L ++ ++++  GD + I      
Sbjct: 131 YGLDEARVLFNGRPAENIRLIAINSDSMADTFAPRDQLFVDISVRMFDGDGIYIFTLDEQ 190

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI---EWIARILWASQ 223
           +  K L  +  + I ++S N  Y    +   ++   + +A+++  SQ
Sbjct: 191 LYLKRLQLQH-KKIAVISDNKRYETWYLNRDEVTSLKVLAKVIM-SQ 235


>gi|254368876|ref|ZP_04984889.1| hypothetical protein FTAG_00694 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121797|gb|EDO65967.1| hypothetical protein FTAG_00694 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 217

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQIELAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMRILGLKDNYC 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                    T         +L +  +G        + P     + + +P+          
Sbjct: 63  PSDTSIITVTNVP------VLSYIQAGEFTESQENIDP----IDYLQIPDTL-------- 104

Query: 133 IQTQDTRHKTQDTSM----------LP-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           I       + Q  SM           P        +G+ ++++          D++++  
Sbjct: 105 IPKNSFSLQVQGESMLYDFSESQLLNPKYSKYTIYEGENILVDPNQVNPQDLIDKVVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN       +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKLQNNDEIKSPADAVIIGRVV 209


>gi|153952309|ref|YP_001398209.1| putative phage repressor protein [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939755|gb|ABS44496.1| putative phage repressor protein [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 239

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 24/222 (10%)

Query: 13  IDRMAERHNLTPSGLARKAGL-----DPTSFNKSKR-FGIEGRNRW-PSTESIFKILAAT 65
           I       N+T   LA    L       T+    K  F  +  +R  P    +  I    
Sbjct: 11  IKSKMREKNITNQYLADYITLHDEKNKRTTVEAIKSWFRSDDNSRTVPEIHKLKYISELL 70

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 LL+    + +          +      G+    +            V V E   
Sbjct: 71  ELDANYLLNFENKNTKEEVIFRYFPDIYASAGFGTSSQSEEVKI--------VSVDENFL 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIV 181
                  I+      K    SM P+   GD +I++ +      ++  D ++ +    D+ 
Sbjct: 123 KEILDIPIKKSYDIIKINGDSMEPILSNGDFIIVDRSKNSLGAISNADIVIFRKN-DDLF 181

Query: 182 AKVLISRR-GRSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219
            K +        + L+S N  Y    V+       E +  ++
Sbjct: 182 CKKIKKEPFEDYLFLVSENKKYEDKKVDNVEFEQCEILGAVV 223


>gi|57237571|ref|YP_178585.1| phage repressor protein, putative [Campylobacter jejuni RM1221]
 gi|57166375|gb|AAW35154.1| phage repressor protein, putative [Campylobacter jejuni RM1221]
          Length = 244

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 18/194 (9%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
              +  K      + + + P  + I  +  A +    +++                  + 
Sbjct: 45  SEATIKKWLMSKEDNKTK-PKPQYIKILCNALDIPFNEVILQDVFRNDNQINFRYFPDIY 103

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                G+    +            V V E          I+      K    SM P+   
Sbjct: 104 ASAGLGTSSQSEEVKI--------VSVDENFLKEILDIPIKKSYDIIKINGDSMEPILSN 155

Query: 154 GDILILNSAI----QVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVE 208
           GD +I++ +      ++  D ++ +    D+  K +        I L+S N  Y    V+
Sbjct: 156 GDFIIVDRSKNSLQTISNADIVIFRKN-DDLFCKKIKKEPFEDYIFLVSENKKYEDKKVD 214

Query: 209 MSDI---EWIARIL 219
            S+    E +  ++
Sbjct: 215 NSEFEQCEILGAVV 228


>gi|294786785|ref|ZP_06752039.1| UmuD protein [Parascardovia denticolens F0305]
 gi|294485618|gb|EFG33252.1| UmuD protein [Parascardovia denticolens F0305]
          Length = 140

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 2/102 (1%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                 S    +               SM       GD+LI++ ++     D ++     
Sbjct: 24  YFDGDFSFDENVIIHPDTTFIVTVAGDSMQGAGIFDGDLLIVDRSLPAQENDVVIAAID- 82

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G++  K L+  +  +  L   N  YP   +       I  ++
Sbjct: 83  GELTVKRLVIDQEGNPVLHPENPSYPDIHLYWEADALIWGVV 124


>gi|294789667|ref|ZP_06754900.1| peptidase, S24 family [Simonsiella muelleri ATCC 29453]
 gi|294482379|gb|EFG30073.1| peptidase, S24 family [Simonsiella muelleri ATCC 29453]
          Length = 198

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 65/218 (29%), Gaps = 34/218 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++++A  ++ + H++  + LA    +   +    ++ G+  +               
Sbjct: 4   TTARLYQAAAQLRQIHDI--AELALALAVSQQTLRNWEQKGLSKK--------------- 46

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                           +  ++             G         F   +   T  +   +
Sbjct: 47  --------------GFQEAKQVFGLSIKWLESGDGDMLERLPEKFSEPSIVPTHNLDLTQ 92

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +             + +ML     GDI+++++ IQ   G  +         +   
Sbjct: 93  FALQRLGLANKHIITQIVNNDNMLNTLSIGDIVLIDTTIQQYIGSGIYAITTPNGNMIYR 152

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
           + + +   + L+  N  YP + V   +   +    R++
Sbjct: 153 INTFQNGFLMLIHDNPAYPPEIVRPDELGSLNITGRVV 190


>gi|123966656|ref|YP_001011737.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9515]
 gi|123201022|gb|ABM72630.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9515]
          Length = 210

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 50/186 (26%), Gaps = 8/186 (4%)

Query: 41  SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
             +  ++     PS   + + +   +    Q       +      +E +   L       
Sbjct: 24  WIKEYMKDFQHSPSIRQMMQAMGLKSPAPIQSRLKHLQEKGYISWQEGKARTLQLIDEVI 83

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
            G    G    G    T          + +   +           SM+      GD++++
Sbjct: 84  EGIPVMGSVAAGGLIETYSDVNENLDISEVLK-KKNVFALTVNGDSMIDACIADGDMVLM 142

Query: 160 NS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                +  +  G  +           K    R    I L + N  Y    + +  + +  
Sbjct: 143 EPIIDSNSLRNGTIVSAMVPGLGTTLKYFSKRGA-KIFLEAANPAYEPIELNLDQVVFQG 201

Query: 217 RI--LW 220
           ++  +W
Sbjct: 202 KLLAVW 207


>gi|224453|prf||1105256A repressor lambda mutant
          Length = 136

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSML------PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +D SM       P +  G +++++    V  GD  + +    ++  K LI  
Sbjct: 38  DSAFWFEVEDNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLEGDELTFKKLIRD 97

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 98  SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 129


>gi|307546321|ref|YP_003898800.1| LexA repressor [Halomonas elongata DSM 2581]
 gi|307218345|emb|CBV43615.1| LexA repressor [Halomonas elongata DSM 2581]
          Length = 158

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 14/119 (11%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILN 160
           G         G+    + VP                   +    SM+      GD++I+ 
Sbjct: 43  GMPIEACLDAGS----IEVPTRMVRR--------NTYALRVHGNSMIDCNIFDGDVIIIE 90

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  G+  ++     ++  K L   +   + L   N       +  SDI+ +  ++
Sbjct: 91  RRESAENGETAVVMINDQEVTLKKLYIEKSG-VRLQPANEEMAPIYLRNSDIQVLGLVM 148


>gi|304398438|ref|ZP_07380311.1| transcriptional repressor, LexA family [Pantoea sp. aB]
 gi|304353943|gb|EFM18317.1| transcriptional repressor, LexA family [Pantoea sp. aB]
          Length = 204

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 38/214 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   +++++ I        + P  + +A + G                  R P+  
Sbjct: 1   MKALTSRQQQVYDLIRDHISSTGMPPTRAEIAAQLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                             L      S G    G    G   
Sbjct: 44  EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEVSEGLPLIGRVAAGEPI 90

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +      + D   +    SM  +    GD+L ++    V  G  ++ +
Sbjct: 91  MAQEHIETHYKVDPGLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 150

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
               ++  K    +    + L+  N  +    V+
Sbjct: 151 ID-DEVTVKRWKKQGA-IVHLLPENSDFDPIVVD 182


>gi|300312765|ref|YP_003776857.1| SOS mutagenesis protein [Herbaspirillum seropedicae SmR1]
 gi|300075550|gb|ADJ64949.1| SOS mutagenesis protein [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score = 69.8 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 137 DTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
                    SM      +GD ++++ ++    G  ++     G+   K L      + +L
Sbjct: 52  TFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQPGHIVVAIVN-GEFTIKRL-RLVNGAYEL 109

Query: 196 MSLNCCYPVDTVEMSDI-EWIARIL 219
              N  +        ++ E    ++
Sbjct: 110 HPENPDFRPIRFGDGEVLEVFGVVV 134


>gi|326570390|gb|EGE20430.1| peptidase S24-like protein [Moraxella catarrhalis BC8]
          Length = 216

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 55/213 (25%), Gaps = 17/213 (7%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
           PS  A KA   P    +  +   + + R    + + + L      +         +    
Sbjct: 2   PSERA-KADQFPKMIRRYSKG--QAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKL 58

Query: 84  EKKEKEIPLLYFPPSGSGGFFD-SGVFPTGNKWNTVGVPEIRSPHN-------GIYAIQT 135
               +           +   F     F  G+       P               +  +  
Sbjct: 59  TPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGRRTLSNLGVMPI 118

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
                   D SM P  + GD + ++   +     R+         + K L       + +
Sbjct: 119 NAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRI 178

Query: 196 MSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
           +S N   +P        +   + E I  +   S
Sbjct: 179 VSDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 211


>gi|317969758|ref|ZP_07971148.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CB0205]
          Length = 148

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + + V      +  +    +     +    SM     + GD+L+++ +++   G  ++
Sbjct: 35  ADDYIDV--GIDLNETLIRHPSSTFFLRVSGDSMVEAGIQHGDLLVVDRSLEARPGHVVV 92

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G    K L       + L + N  YP   +    D++ 
Sbjct: 93  AVLD-GAFTLKRLARH-QGRLRLEAANSAYPPLELHHCGDVQI 133


>gi|251793277|ref|YP_003008005.1| LexA repressor [Aggregatibacter aphrophilus NJ8700]
 gi|247534672|gb|ACS97918.1| LexA repressor [Aggregatibacter aphrophilus NJ8700]
          Length = 208

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 34/224 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   +++++ +    E   + P+    +A +        +             +++
Sbjct: 1   MKPLTARQQEVYDFLKHHLETTGMPPT----RAEISK------ELGFRSPNAAEEHLKAL 50

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K                  +  +   +   + L         G    G    G      
Sbjct: 51  AK--------------KGVIEIISGASRGIRLLLEDNNVEEEPGLPLIGRVAAGEPILAE 96

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E     +        D   K    SM  +    GD+L ++S   V  G  ++ +   
Sbjct: 97  QHIEGTYHVDPAMFKPRADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQVVVARI-E 155

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216
            ++  K L  + G  I L + N  +    V+++     +IE IA
Sbjct: 156 DEVTVKRLERK-GSIIYLHAENEEFAPIVVDLTQRPHFEIEGIA 198


>gi|188533594|ref|YP_001907391.1| Protein UmuD [Erwinia tasmaniensis Et1/99]
 gi|188028636|emb|CAO96498.1| Protein UmuD [Erwinia tasmaniensis Et1/99]
          Length = 139

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  + A        K    SM       GD+L+++ ++    GD ++  
Sbjct: 32  DYVE--DRLDLNTLLIAHPGATYFIKVSGESMTGAGIGDGDLLVVDRSLSARHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
              G+   K L +    S+ L+  N  Y   T     ++E    +
Sbjct: 90  -VAGEFTVKELRTHP--SLQLVPHNDSYSPMTFHNAEELEIFGVV 131


>gi|126641272|ref|YP_001084256.1| peptidase S24 S26A and S26B [Acinetobacter baumannii ATCC 17978]
          Length = 197

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 48/194 (24%), Gaps = 6/194 (3%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKI-LAATNETICQLLDLPFSDGRTTEKKEKEIP 91
           +   ++   +          P       +          +           T        
Sbjct: 1   MSQPAYQALESGKNLKSAFLPLIAQFLGVDAYWLTTGNSEDSFRESDVFSPTVVNNDAAD 60

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
              +       F           ++ +   +P   S        Q      K +  SM  
Sbjct: 61  QYVWIEVVEASFSCGTGESIEFHFDAINGKIPFPASFFKEKRVAQECMRIIKAKGDSMTD 120

Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
             + GD++ ++ +        +      G+ + K +      S+ L SLN  +    V  
Sbjct: 121 YIKDGDLVGIDISQTEVIDGEIYAVYFAGEGMIKQIFKEADGSLILHSLNEKFRDRRVTE 180

Query: 210 S---DIEWIARILW 220
               + + + R  W
Sbjct: 181 ENGKNFKVMGRQFW 194


>gi|330861945|emb|CBX72114.1| lexA repressor [Yersinia enterocolitica W22703]
          Length = 133

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 3/113 (2%)

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
             G    G    G         E     +      + D   +    SM  +    GD+L 
Sbjct: 4   EDGLPLIGRVAAGEPLLAQQHIEGHYKVDPSMFKPSADFLLRVNGMSMRDIGILDGDLLA 63

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           ++    V  G  ++ +    ++  K L  + G  + L+  N  +    V++ +
Sbjct: 64  VHKTQDVRNGQVVVARID-DEVTVKRLKKQ-GNIVQLLPENSEFQPIVVDLRE 114


>gi|312129359|ref|YP_003996699.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM
           17132]
 gi|311905905|gb|ADQ16346.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM
           17132]
          Length = 252

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 69/225 (30%), Gaps = 19/225 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+  S     + +  +  R  L+   +A +  +    + K +    E     P  E + K
Sbjct: 1   MSLLS-----DNMRFLRARMGLSQQAVADELIITRGRYAKYEDGMSE-----PPIELLLK 50

Query: 61  ILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--N 113
           I      +I       +  +P  + +        +P++      +           G  +
Sbjct: 51  ISRFYKVSIDLLVSVDIRRVPLDELQQLPDNRILLPIVVDTEGRNRIEIIPHKARMGYLS 110

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRL 171
            ++     E     +  +    +         SM P      I+   ++S   +  G   
Sbjct: 111 GYSDPEYIESLQHISLPFLSHAKYRAFPATGDSMPPHTEGSFIIGKYVSSRADLRVGKTY 170

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +   R   I  K L   +   + L S N  Y    VE +D+  I 
Sbjct: 171 VFLTRQEGISYKRLGEIKAHGLVLHSDNPFYKPFEVEYADLLEIW 215


>gi|326789355|ref|YP_004307176.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326540119|gb|ADZ81978.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 805

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 109 FPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVN 166
              G     V            +   +      + +  SM     + GD ++++S+    
Sbjct: 689 IAAGIPIEIVDEIRGTFDLPRELLRGKESVYILQVKGDSMIEKDIQNGDYVVIDSSA-AV 747

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +      G    K ++   G S+ L+S N  Y    +E  D+  + +++
Sbjct: 748 NDQDIAAVYYNGATTLKQVMHM-GDSVLLISANPKYEPIHIEEGDLSIMGKLV 799


>gi|171058765|ref|YP_001791114.1| LexA repressor [Leptothrix cholodnii SP-6]
 gi|229621219|sp|B1Y250|LEXA_LEPCP RecName: Full=LexA repressor
 gi|170776210|gb|ACB34349.1| transcriptional repressor, LexA family [Leptothrix cholodnii SP-6]
          Length = 231

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 16/216 (7%)

Query: 2   TSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
              +   ++I + I    ER    P  + +A + G              E   +  + + 
Sbjct: 5   PKLTARQQQILDLIQSTIERTGAPPTRAEIATEFGFRSA-------NAAEEHLQALARKG 57

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG--SGGFFDSGVFPTGNKW 115
           + ++L  T+  I    D   S   +  +   +   L               G    G+  
Sbjct: 58  VIELLGGTSRGIRLKSDTLRSINESRLRGIGQQFSLPLSNMPPAQLTLPLVGRVAAGSPI 117

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 +           +  D   K +  SM       GD++ +  A +   G  ++ +
Sbjct: 118 LAQQHIDQSYTFEAHMFSRKPDFLLKVRGMSMRDAGILDGDLIAVQRASEAKNGQIVVAR 177

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
               ++  K     +   IDL+  N  + +  V   
Sbjct: 178 -LGDEVTVKRWRRSKSG-IDLIPENPDFDIIHVPAD 211


>gi|120601508|ref|YP_965908.1| prophage repressor [Desulfovibrio vulgaris DP4]
 gi|120561737|gb|ABM27481.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Desulfovibrio vulgaris DP4]
          Length = 202

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        ++ I          +    SML      GD+L+++ A+    G R++
Sbjct: 93  ADDYID--RSLDLNDHIVKHPAATFYVRASGESMLGAGVHDGDLLVVDRALDPRPG-RVV 149

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218
           I    G++  K L+   G  + L   N  YP   +    D+E    +
Sbjct: 150 IAAVDGELTVKRLVR-EGGRLLLAPENAAYPPLDITGREDVEVWGVV 195


>gi|28198029|ref|NP_778343.1| LexA repressor [Xylella fastidiosa Temecula1]
 gi|182680656|ref|YP_001828816.1| LexA repressor [Xylella fastidiosa M23]
 gi|32129716|sp|Q87F45|LEXA_XYLFT RecName: Full=LexA repressor
 gi|229470197|sp|B2I679|LEXA_XYLF2 RecName: Full=LexA repressor
 gi|28056089|gb|AAO27992.1| LexA repressor [Xylella fastidiosa Temecula1]
 gi|182630766|gb|ACB91542.1| transcriptional repressor, LexA family [Xylella fastidiosa M23]
 gi|307579117|gb|ADN63086.1| LexA repressor [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 211

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 57/209 (27%), Gaps = 23/209 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + I   I        ++PS   +AR  G            G+              ++ 
Sbjct: 7   QQAILSLITNNINADGVSPSQTEIARAFGFK----------GVRAVQHHLDVLEQQGMIR 56

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                   +     ++        +   +L  P  G            G   + V +   
Sbjct: 57  RIPGQARGIRLKHLTEVDEVALALQSKDVLRLPVLGRVAAGQPIGADIG--EDHVVL--- 111

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               + ++     D   + Q  SM       GD++ ++     + G  ++ +    +I  
Sbjct: 112 ---LDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVARID-DEITV 167

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L+      I L+  N  +    V    
Sbjct: 168 K-LLKISKDRIRLLPRNPDFAPIEVRSDQ 195


>gi|332519273|ref|ZP_08395740.1| Peptidase S24/S26A/S26B, conserved region [Lacinutrix algicola
           5H-3-7-4]
 gi|332045121|gb|EGI81314.1| Peptidase S24/S26A/S26B, conserved region [Lacinutrix algicola
           5H-3-7-4]
          Length = 147

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 4/142 (2%)

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-EIRSPHNGIYAIQTQDT 138
            +   K       +  P   +           G    T     E  S    +   +    
Sbjct: 1   MKILHKSTGLTLYVPEPIKDAAAQLFDTGISAGFPSPTEDFSQERLSLDQELVKNKETTF 60

Query: 139 RHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
             +    SM+       D+L+++ +++       +     G+   K L       I L  
Sbjct: 61  YARVSGQSMIGAGLDDNDLLVIDRSLEPENNKIAVCFLD-GEFTVKRL-RVTKDEIWLKP 118

Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
            N  YP+  +   +   I  I+
Sbjct: 119 ENPDYPIINITEENNFLIWGIV 140


>gi|71281427|ref|YP_267004.1| LexA repressor [Colwellia psychrerythraea 34H]
 gi|123733835|sp|Q48AA9|LEXA_COLP3 RecName: Full=LexA repressor
 gi|71147167|gb|AAZ27640.1| LexA repressor [Colwellia psychrerythraea 34H]
          Length = 211

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 34/208 (16%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++I++ I    +   + P  + +A   G    S N ++             +++ K   
Sbjct: 15  QQQIYDLIKAKIQDTGMPPTRAEIANFFGFK--SANAAEEH----------LKALAK--- 59

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                        L      + G    G    G         E 
Sbjct: 60  --------------KGYIEMLAGTSRGIRLVEEMLEAEGLPLIGRVAAGEPILAQEHIEE 105

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +G       D   +    SM  +    GD+L ++   +V  G  ++ +    D+  
Sbjct: 106 HYKMDGNLFHPAADYLLRVNGESMKDIGILDGDLLAVHQTTEVQNGQVVVAR-VENDVTV 164

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           K      G  + L + N  +    V+++
Sbjct: 165 KRFKR-EGNVVYLHAENEDFSPIKVDLA 191


>gi|120599727|ref|YP_964301.1| putative phage repressor [Shewanella sp. W3-18-1]
 gi|120559820|gb|ABM25747.1| putative phage repressor [Shewanella sp. W3-18-1]
          Length = 253

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 26/220 (11%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           +    A  +G+  T+  +      +     PS +++  I  +    +  L          
Sbjct: 34  SIRAFALDSGVSETAMRQYVSGKSD-----PSRKALIAIARSGKVGVEWLASGKGPKLTV 88

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEIRSPHNGIYAIQTQDTR 139
              ++  I         S       V    +                         +   
Sbjct: 89  DHIEDSYIQKADGFIYVSNIRIQKEVSSEEDTTSKIVNTRYAFRSDWIEKEGLQAQRLAM 148

Query: 140 HKTQDTSMLPLYRKGDILIL------NSAIQVNCG---------DRLLIKPRTGDIVAKV 184
              +  SM PL ++GD L++      + + +++ G         D + +      +V K 
Sbjct: 149 VNAKGDSMEPLIKEGDKLLVETFFYKDPSGRIHQGLEPSTFIESDGVYVIRLDKHMVVKR 208

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
           L       + + + N  Y    +  ++   I  +A+++ A
Sbjct: 209 LQLDMKGGVYIKNDNPAYETIHLTKAELVSIVIVAKVILA 248


>gi|150397057|ref|YP_001327524.1| putative phage repressor [Sinorhizobium medicae WSM419]
 gi|150028572|gb|ABR60689.1| putative phage repressor [Sinorhizobium medicae WSM419]
          Length = 241

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 68/236 (28%), Gaps = 27/236 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSF-------NKSKRFGIEGRNRW 52
           M+    ++  E +     +      S  A   G+  +++       N  +    E   R 
Sbjct: 9   MSPVMSER-AERLREARVKAGYRFASDAANALGIVTSTYRAHENGQNDFELGEAEVYGRK 67

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL-----YFPPSGSGGFFDSG 107
            + + ++ +      T   L                   ++           + G  D  
Sbjct: 68  FNVDPLWLLTGTDRRTSIPLPPATTLPEVHAPNARVGAKVIGQGEKIPVFGQAVGGVDGE 127

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
               GN    V  P I S  +G YA             SM P Y  G++  ++ + +V  
Sbjct: 128 FIMNGNVLYEVMAPPILSDVSGAYA-------VSVSGDSMYPRYEDGEVCFVDPSRRVRK 180

Query: 168 GDRLLIKPRTGD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           GD ++ + R  +        K  +      + L   N        E   +  +  I
Sbjct: 181 GDYVIAQIRLEESGALLAYVKKFVRHNSSELVLEQFNP-PKELRFEAHTVHSVHYI 235


>gi|283956310|ref|ZP_06373790.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792030|gb|EFC30819.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 244

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 18/194 (9%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
              +  K      + + + P  + I  +  A +    +++                  + 
Sbjct: 45  SEATIKKWLMSKEDNKTK-PKPQYIKILCNALDIPFNEVILQDVFRNDNQINFRYFPDIY 103

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                G+    +            V V E          I+      K    SM P+   
Sbjct: 104 ASAGLGTSSQSEEVKI--------VSVDENFLKEILDIPIKKSYDIIKINGDSMEPILSN 155

Query: 154 GDILILNSAI----QVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVE 208
           GD +I++ +      ++  D ++ +    D+  K +        I L+S N  Y    V+
Sbjct: 156 GDFIIIDRSKNSLETISNADIVIFRKN-DDLFCKKIKKEPFENYIFLVSENKKYEDKKVD 214

Query: 209 MSDI---EWIARIL 219
            S+    E +  ++
Sbjct: 215 NSEFEQCEILGAVV 228


>gi|294085036|ref|YP_003551796.1| DNA polymerase V [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664611|gb|ADE39712.1| DNA polymerase V [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 129

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        +  +          +    SM       GD+L+++ ++     D ++
Sbjct: 21  AEDYID--STLDLNAHLIENPAATFFLRVAGDSMTGAGIHSGDLLMVDRSLTPKINDIVI 78

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
                 +   K L   +     L S N  YP   +       I  ++  S
Sbjct: 79  -ATIHNEFTVKRLGQHKEGWF-LQSENPDYPCLEIPEDS--HIWGVVTYS 124


>gi|163792598|ref|ZP_02186575.1| prophage MuMc02-like, peptidase, family S24 [alpha proteobacterium
           BAL199]
 gi|159182303|gb|EDP66812.1| prophage MuMc02-like, peptidase, family S24 [alpha proteobacterium
           BAL199]
          Length = 243

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 18/198 (9%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            LA   G+D ++         +G    P T    ++ A T         +   D      
Sbjct: 56  ALAAHLGVDESAL-------RDGSLPMPVTTGARQVDAVTARRPRVYSRILDPDTEPGVV 108

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
              E+ +      G+   +           ++   P     H  + A             
Sbjct: 109 AVPEVRVTAAAGGGAVAEY-------EALGDSWYFPVDWLRHE-LRARAADLKIISIDGD 160

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG---RSIDLMSLNCCY 202
           SM P+   GD ++++++        + +      +VAK +         ++ + S N  Y
Sbjct: 161 SMEPVLSAGDKVLIDTSRVAPSPPGIFVLHDGLGLVAKQVEYVPNTDPPTLVIKSANSRY 220

Query: 203 PVDTVEMSDIEWIARILW 220
                 + ++    R++W
Sbjct: 221 QDYERTVDEVTIAGRVIW 238


>gi|15603046|ref|NP_246118.1| LexA repressor [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431624|sp|P57917|LEXA_PASMU RecName: Full=LexA repressor
 gi|12721532|gb|AAK03265.1| LexA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 211

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 38/220 (17%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62
            +++++ + R  E   + P  + ++++ G                  R P+  E   K L
Sbjct: 11  QQEVYDLLKRHLENTGMPPTRAEISKELGF-----------------RSPNAAEEHLKAL 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                  +   +   + L       + G    G    G         E
Sbjct: 54  ARKGVIEI----------ISGTSRGIRLLLEESESDENQGLPLVGRVAAGEPILAEQHIE 103

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +        +   K    SM  +    GD+L ++S   V  G  ++ +    ++ 
Sbjct: 104 GTYQVDANMFKPQANFLLKVYGQSMKNIGILDGDLLAVHSTKDVRNGQIVVARI-EDEVT 162

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216
            K L  + G  I L + N  +    V+++     +IE IA
Sbjct: 163 VKRLERK-GSVIYLHAENEEFAPIVVDLNQQPNFEIEGIA 201


>gi|303245282|ref|ZP_07331566.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
           fructosovorans JJ]
 gi|302493131|gb|EFL52993.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
           fructosovorans JJ]
          Length = 142

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 3/104 (2%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              + +    ++   A        +    SM     + GDIL+++ A +   G  ++   
Sbjct: 34  EDYLDQALDLNDLCIAHPAATFYVRASGESMRGAGIQSGDILVVDRAEEARPGRIVIAAV 93

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K L       + L   N  Y    +       I  ++
Sbjct: 94  D-GELTVKRL-KHMDGRLFLAPENDAYKPIEIRPESSFEIWGVV 135


>gi|218886530|ref|YP_002435851.1| peptidase S24 and S26 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757484|gb|ACL08383.1| peptidase S24 and S26 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 150

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +  P   + H   +         + Q  SM       GD+L+++ A++     ++ 
Sbjct: 41  ADDYMDRPLDIAEHLVRH--PEATFFLRAQGQSMTGAGIHDGDLLVVDRAVEPVHN-KVA 97

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I    G++  K L   R   + L+  N  Y    V   D   +  ++
Sbjct: 98  IVAVDGELTVKRLY-LRAGRVVLLPENPDYEPLDVTGRDDVHVWGVV 143


>gi|255527634|ref|ZP_05394495.1| LexA repressor [Clostridium carboxidivorans P7]
 gi|296185312|ref|ZP_06853722.1| repressor LexA [Clostridium carboxidivorans P7]
 gi|255508676|gb|EET85055.1| LexA repressor [Clostridium carboxidivorans P7]
 gi|296050146|gb|EFG89570.1| repressor LexA [Clostridium carboxidivorans P7]
          Length = 487

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 9/121 (7%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155
           P  S       +       +   VP                   K +  SM+      GD
Sbjct: 366 PVYSDIAAGEPILMNPEIEDVFYVPTYWLKGM------KDCFILKVRGDSMIGADIDNGD 419

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
            +I+         D + +    G+   K  ++++   I LM  N  Y    +       I
Sbjct: 420 YVIIKKQYTAQNKDIVAVNLD-GNATLKRFVNKKEG-IYLMPENKKYEPIRINDEGARII 477

Query: 216 A 216
            
Sbjct: 478 G 478


>gi|294665466|ref|ZP_06730751.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604765|gb|EFF48131.1| LexA repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 201

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 68/215 (31%), Gaps = 35/215 (16%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M S   ++  +   +     +  ++PS   +A+  G          R   +   +  +  
Sbjct: 1   MPSLPPQRAAVLAFLQE-QAQAGVSPSLAEIAQAFGFAS-------RNAAQKHVQALADA 52

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++L                 G         +P+L    +G          P G    
Sbjct: 53  GLIELLPN-------QKRGIRLPGGAGRDALLALPVLGRVAAG---------LPIGA--- 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
            +G+         +++++      + Q  SM+      GD++ ++ + +   G  ++ + 
Sbjct: 94  DIGLERQLWLDRAMFSLRPD-YLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARV 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             G I  K L       I L+  NC +    V   
Sbjct: 153 D-GGITIKRLER-GAERIRLLPRNCAHAPIVVAAD 185


>gi|270159187|ref|ZP_06187843.1| LexA repressor protein [Legionella longbeachae D-4968]
 gi|289165985|ref|YP_003456123.1| Peptidase S24 family protein [Legionella longbeachae NSW150]
 gi|269987526|gb|EEZ93781.1| LexA repressor protein [Legionella longbeachae D-4968]
 gi|288859158|emb|CBJ13087.1| Peptidase S24 family protein [Legionella longbeachae NSW150]
          Length = 168

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + +        +       +     +    SM       GD L+++ +I+ + G  ++
Sbjct: 58  ADDYIE--GYLDLNMKFIKHPSDTFVVQAIGESMVEAGIFSGDWLLVDRSIEPSDGRIVI 115

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  +    + L+  N  +    +       I  ++
Sbjct: 116 AAIN-GELTVKRLFKK-AGKVQLLPANPQFNPIDINEDSEMVIWGVV 160


>gi|113952925|ref|YP_730045.1| LexA repressor [Synechococcus sp. CC9311]
 gi|113880276|gb|ABI45234.1| LexA repressor [Synechococcus sp. CC9311]
          Length = 212

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 46/192 (23%), Gaps = 8/192 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I      PS   + + +   +    Q              +E +   L 
Sbjct: 20  QQELYDWLSDYIGSHRHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWLTWQEGQARTLQ 79

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                + G    G    G    T    +       +   +           SM+      
Sbjct: 80  LLGDVASGIPVLGAVAAGGLVETFDDVQEHLDLAPVLETRG-LFALTVNGDSMVDAHIAD 138

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++++    +      G  +           K      G  + L + N  Y    +   
Sbjct: 139 GDVVLMEPVQEPGRLRQGTIVSALVAGSGTTLKHFH-LDGSVVRLEAANPAYDPIELPAE 197

Query: 211 DIEWIARI--LW 220
            ++   ++  +W
Sbjct: 198 QVQVQGKLMAVW 209


>gi|116749299|ref|YP_845986.1| putative phage repressor [Syntrophobacter fumaroxidans MPOB]
 gi|116698363|gb|ABK17551.1| putative phage repressor [Syntrophobacter fumaroxidans MPOB]
          Length = 244

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 21/226 (9%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + ++ +   L+ +  AR+  +   +    +          P+   + K+    + +   
Sbjct: 19  RLKKIIQNSGLSLAEFARRTQVSKNTLVNYRDEAT-----SPTGTFLEKVCRNFSVSASW 73

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPEIRSP--HN 128
           LL         +   ++ +     P   S       G    G+  +              
Sbjct: 74  LLLGDGGPYDVSGGGKRAVEYTLIPLLKSRVSTGPDGEILFGDIEDHYPFKLWWLEKLVG 133

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTGDIVAKV 184
                Q      + Q  +MLP   +GD+ +++S          G   L+    G    + 
Sbjct: 134 EGERRQKGLFLIRVQGDAMLPTVNQGDVALVDSDEAERMRVLSGRIYLVVLPDGATAFRR 193

Query: 185 LISRRGR---SIDLMSLN-CCYPVDTVEMS-----DIEWIARILWA 221
           L    GR    +  +S N   +      +          + RI W 
Sbjct: 194 LALSGGRDCPRLVCLSDNTAAFRPFEFALDPGKPLRNHILGRIRWV 239


>gi|332184476|gb|AEE26730.1| cI [Francisella cf. novicida 3523]
          Length = 217

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 68/226 (30%), Gaps = 43/226 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  +    LA+K G    +               PS +   +++          
Sbjct: 8   LKPALKRIGMKQIDLAKKLGKSDRTIKGWVAGTN-----CPSYDGHIEVMKILGLEDNYH 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            +        +      +P+L +  +G        + P     + + +P           
Sbjct: 63  PN------ARSIVAIANVPVLSYVQAGEFTESQESIDP----IDYLQIPHSL-------- 104

Query: 133 IQTQDTRHKTQDTSML----------P-----LYRKGDILILNSAIQVNCG--DRLLIKP 175
           +       + Q  SML          P        +G+ ++++          D++++  
Sbjct: 105 VPKNGFSLRVQGESMLYDSSESQLLSPKYAKYTLYEGENILVDPNEISPQNLVDKIVVAR 164

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            +     K L+ +    + LM LN  +    +    +D   I R++
Sbjct: 165 NSDGATVK-LLYKDNNRLYLMPLNSKFQNNDEIKSPADAVIIGRVV 209


>gi|313672654|ref|YP_004050765.1| transcriptional repressor, lexa family [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939410|gb|ADR18602.1| transcriptional repressor, LexA family [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 206

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 31/119 (26%), Gaps = 3/119 (2%)

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILI 158
           + G    G    G   +     E   P   I    +     +    SM       GDI I
Sbjct: 71  NNGIPILGRITAGIPIDAEENIEGYIPLEDILGDISGYFGLRVIGDSMVEKGILDGDIAI 130

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIA 216
           +     +     +      G+   K         I L   N  Y    +  +D  E + 
Sbjct: 131 IKKQPDILNNQ-VGAFMINGEFTLKTFKMMDDGRIYLKPENNKYKPIYITENDTFEVVG 188


>gi|152996004|ref|YP_001340839.1| putative prophage repressor [Marinomonas sp. MWYL1]
 gi|150836928|gb|ABR70904.1| putative prophage repressor [Marinomonas sp. MWYL1]
          Length = 148

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V +    +    A        + Q  SM+ +    GD+L+++ ++    GD ++     G
Sbjct: 41  VEKSLDLNEFCVAHPNATFYVRAQGDSMIDVGIYSGDVLVVDRSLTARHGDIVIACI-HG 99

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218
           ++  K L  +    + L   N  Y    +    ++E    +
Sbjct: 100 EMTVKTLELKPN--VLLRPKNKAYKAIHITEESELEIFGVV 138


>gi|121593926|ref|YP_985822.1| putative phage repressor [Acidovorax sp. JS42]
 gi|120606006|gb|ABM41746.1| putative phage repressor [Acidovorax sp. JS42]
          Length = 240

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 34/217 (15%)

Query: 9   IWEAIDRMAERHNLTPSG-LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + +        +     ++  AG+   +    +R+        P  ES  ++ A    
Sbjct: 41  VRDRLQARLIAMGIPADKTVSHVAGITQRAAQSVRRWFDASEPGLPDLESFARLCAGLGC 100

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  +++    +         + I +     + +      G                    
Sbjct: 101 SADEIIGALRAHADDEAHCAQLIEVANCIQAITDSLAHHGQLGIP--------------- 145

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                        +     M P  + GD++ ++SA+    G+ +      G +  + +  
Sbjct: 146 ------------MRVPGDEMAPHLKAGDLVFVDSAVTQLAGNGIYAFNCNGSLYIRRVER 193

Query: 188 RRGRSIDLMSLNCCYPVDT------VEMSDIEWIARI 218
           R  RSI L   N  Y               ++ + ++
Sbjct: 194 RMDRSIVLKCDNKAYQDYEWTGATAAARRRVKVLGKV 230


>gi|308188951|ref|YP_003933082.1| LexA repressor [Pantoea vagans C9-1]
 gi|308059461|gb|ADO11633.1| LexA repressor [Pantoea vagans C9-1]
          Length = 204

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 38/214 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + +   +++++ I        + P  + +A + G                  R P+  
Sbjct: 1   MKALTSRQQQVYDLIRDHISSTGMPPTRAEIAAQLGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                             L      S G    G    G   
Sbjct: 44  EEHLKALARKGV-------------IEIVSGASRGIRLLMEEEASEGIPLIGRVAAGEPI 90

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +      + D   +    SM  +    GD+L ++    V  G  ++ +
Sbjct: 91  MAQEHIETHYKVDPGLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVAR 150

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
               ++  K    +    + L+  N  +    V+
Sbjct: 151 ID-DEVTVKRWKKQGA-IVHLLPENSDFDPIVVD 182


>gi|148242855|ref|YP_001228012.1| SOS-response transcriptional repressor [Synechococcus sp. RCC307]
 gi|147851165|emb|CAK28659.1| SOS-response transcriptional repressor [Synechococcus sp. RCC307]
          Length = 204

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 48/191 (25%), Gaps = 8/191 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
                      I      PS   + +   L +      +L  L      T ++ +     
Sbjct: 10  QQELYDWLAEFIADNRHSPSIRQMMQGMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQ 69

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151
           L    + S G    G    G    T    +           +           SM     
Sbjct: 70  LLGDAADSLGIPVLGAVAAGGLIETFDDVQEHLDIAPTLERRG-LFALTVNGDSMKDAHI 128

Query: 152 RKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
             GD++++           G  +           K     RG  + L + N  Y   T+ 
Sbjct: 129 ADGDVVLMEPVRDPSRLKPGTIVSALVAGSGTTLKHFH-LRGGEVSLEAANPNYEPITLP 187

Query: 209 MSDIEWIARIL 219
             ++    +++
Sbjct: 188 AEEVTVQGQLV 198


>gi|325696642|gb|EGD38531.1| phage transcriptional repressor [Streptococcus sanguinis SK160]
          Length = 257

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 66/232 (28%), Gaps = 29/232 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + ++ + +        L+R+ G+  ++     +         P   ++ KI    +  
Sbjct: 19  ISKKLEELLKETGKKQVELSRETGIPASTLTGYIKGTS-----LPIAANLEKIARFFDVE 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLY-----------------FPPSGSGGFFDSGVFPT 111
           + ++           ++      +                        +        FP 
Sbjct: 74  VEEIDPRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP- 132

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +    + + +     +  +  +   D     +  S+ P Y   D + L         
Sbjct: 133 YLVYENYYLSQHKPEQADLVWLDREIDYDIALWVRTDSLEPKYP-RDSVALIKQTHFELA 191

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
             +      G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 192 GAIYAIDYDGQTIIKRVFNDPSG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|237731165|ref|ZP_04561646.1| SOS mutagenesis [Citrobacter sp. 30_2]
 gi|226906704|gb|EEH92622.1| SOS mutagenesis [Citrobacter sp. 30_2]
          Length = 139

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 8/130 (6%)

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
            L                FP+    + V   +    +  +          K+   SM   
Sbjct: 8   ELRQIVALPLFSDLVPCGFPSPAH-DYVE--QRIDLNELLVQHPCATYFVKSSGDSMTGA 64

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
               GD+L+++ + + + GD ++     G+   K L       + L+  N  Y   T+  
Sbjct: 65  GIGNGDLLVVDRSRKPSHGDIVIAAID-GEFTVKRLQLHP--ILMLVPENNAYAPITINS 121

Query: 210 SD-IEWIARI 218
            D ++    +
Sbjct: 122 EDTLDIFGVV 131


>gi|299769731|ref|YP_003731757.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein
           [Acinetobacter sp. DR1]
 gi|298699819|gb|ADI90384.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein
           [Acinetobacter sp. DR1]
          Length = 254

 Score = 69.4 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 32/246 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I+ +  +++  P+ L +K   +  ++  +      +   R  + E I K    T  
Sbjct: 4   LKSNIEYLLNKNDTNPNDLEQKHPEIKQSTVFRILNGITKD-PRRSTLEPIAKWAGVTVN 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------------FFDSGVFPTGNK 114
            +           +       +  ++Y                     F+       G  
Sbjct: 63  DLFDKDLSVLERNQNQHNPGPDNNIIYDTEIHLYEEGDPIPDGYVAIDFYSEIKVSAGGG 122

Query: 115 WNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
           +  +            +                    SM P    G  + ++++ +    
Sbjct: 123 YLNIEQQSPHKFLFPVNEIRRYDVKPDCAKVIIVDGESMFPDLIPGQRISIDTSAKRIFD 182

Query: 169 DRLLIKPRTGDIVAKVLIS---RRGRSIDLMSLNCC--------YPVDTVEMSDIEWIAR 217
             +    R  ++  K+L     +       +S N          Y    +E  +++ I +
Sbjct: 183 GEIYAFLRGDELKIKMLFEWNEQGRGGFKAVSRNTDKVKYPDEYYSPARIEAENVQIIGQ 242

Query: 218 ILWASQ 223
             W S+
Sbjct: 243 YWWKSE 248


>gi|219883263|ref|YP_002478424.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
           A6]
 gi|219862108|gb|ACL42448.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 143

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +    T     +    SM       GD LI++ A++   G  ++     
Sbjct: 37  YFDGRIDLNAHLIKDVTSTYVVRVSGESMEGAGISDGDELIVDRALEPRDGSVVIAVLD- 95

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           G++  K L       + L + N  YP   V  
Sbjct: 96  GELTIKRL-RITPTGVILQAENPAYPDIEVPA 126


>gi|146311560|ref|YP_001176634.1| putative prophage repressor [Enterobacter sp. 638]
 gi|145318436|gb|ABP60583.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Enterobacter sp. 638]
          Length = 144

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     +    SM+      GD+L+++ A+    GD ++  
Sbjct: 32  DYVE--DRIDLNKLVIKHPSATYFIRVSGESMIGAGITDGDLLVVDRALTPEHGDIVVAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G+   K L  R    + L+  N  +     +   +++    +
Sbjct: 90  -VAGEFTVKELRVRP--ILQLVPRNPRFSPIIFDAEEELQIFGVV 131


>gi|261866727|ref|YP_003254649.1| putative transcription regulator [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412059|gb|ACX81430.1| probable transcription regulator [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 137

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 100 SGGFFDSGVFPTGNKW--NTVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYR 152
               F S     G       V  P+ + P++           T         TSM P   
Sbjct: 1   MIDCFCSVNVSAGFGSFNEGVTAPDGQVPYSDSLLQKLGIKSTHAAVFWADGTSMRPTID 60

Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD 211
            GD ++++ + +   GD++ +      +  K +       I+L+S N   Y   T+   +
Sbjct: 61  DGDQMLVDLSKKEIKGDKIYLVQNRESVWVKRV-KLNWNGIELISDNKEEYAPITLTKEE 119

Query: 212 ---IEWIARI 218
              +E I ++
Sbjct: 120 ADKLEIIGQV 129


>gi|312438260|gb|ADQ77331.1| repressor LexA [Staphylococcus aureus subsp. aureus TCH60]
          Length = 195

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 29/196 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +    +I+  I ++ +     PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +   ++     +++  +       K      +                   N 
Sbjct: 61  TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +PE  +  +      +          SM       GD +I+ S      GD ++ 
Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158

Query: 174 KPRTGDIVAKVLISRR 189
                +   K     +
Sbjct: 159 MTEEDEATVKRFYKEK 174


>gi|90416646|ref|ZP_01224576.1| LexA repressor [marine gamma proteobacterium HTCC2207]
 gi|90331399|gb|EAS46635.1| LexA repressor [marine gamma proteobacterium HTCC2207]
          Length = 201

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 39/215 (18%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++I++ I    E     P  + +A++ G              E   R  + +
Sbjct: 1   MDRLTARQQQIFDLIRDNIEDTGYPPTRAEIAQQLGFKSA-------NAAEDHLRALARK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + +                        +  + +      P          +    N  +
Sbjct: 54  GVIE------------------MIPGASRGIRIVEQFSGIPIIGRVAAGDPILAEQNIED 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              VP               D   + Q  SM+ +    GD+L ++          ++ + 
Sbjct: 96  YQEVPSSTFH-------PHADYFLRVQGQSMINVGIMDGDLLAVHQQPTAENSQIVVARV 148

Query: 176 RTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEM 209
             G++  K L   R +  I L+  N  Y    V++
Sbjct: 149 D-GEVTVKRLKRTRSKHEIHLLPENHDYSPILVDL 182


>gi|333005008|gb|EGK24528.1| protein umuD [Shigella flexneri VA-6]
          Length = 139

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQRLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132


>gi|310780566|ref|YP_003968898.1| Peptidase S24/S26A/S26B, conserved region [Ilyobacter polytropus
           DSM 2926]
 gi|309749889|gb|ADO84550.1| Peptidase S24/S26A/S26B, conserved region [Ilyobacter polytropus
           DSM 2926]
          Length = 810

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 128 NGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                        + +  SM       GD+++L   +    GD + +    G+   K L+
Sbjct: 712 PKELVKDESGFFLRVRGDSMKNADIDDGDLVLLRQDLDPKSGDIIAVAID-GEATLKRLM 770

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
             R  +I L+  N  Y    +   D+  + 
Sbjct: 771 KMRN-AIILLPENPEYEEIYINEQDVNLLG 799


>gi|52842273|ref|YP_096072.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629384|gb|AAU28125.1| hypothetical phage repressor [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 207

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 65/212 (30%), Gaps = 27/212 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI   I    +    T   LA   G      +  +R       R P  +    + +A   
Sbjct: 14  KIGLRIKESRKNKKFTAVQLAEVTGFSAQRISNWERGT-----RTPRFKDAEILGSALGV 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +   LL L        +   + IP++                 +      + +P     +
Sbjct: 69  SPTWLLFLDIDHKPMKDHPFQTIPIIN---------------ASSKIEGYLPIPSSIQDN 113

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                I   D      D SM P+Y  GD++      Q +C D +LI     +      IS
Sbjct: 114 -----ITHDDFAFIVHDKSMSPIYNAGDLVTFCKEKQNHC-DLVLIHINATEENLFRKIS 167

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDI-EWIARI 218
               +     +N  +P    E + + + I  +
Sbjct: 168 SEDNTFICSPINPDWPQIRFESASMFQIIGWV 199


>gi|38505658|ref|NP_942279.1| hypothetical protein sll5123 [Synechocystis sp. PCC 6803]
 gi|38423682|dbj|BAD01893.1| sll5123 [Synechocystis sp. PCC 6803]
          Length = 144

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +      +  +          +    SM+      GDILI++ +++   G +++I  
Sbjct: 36  EDYLEGKLDLNQYLIKHPAATFFVRVTGDSMIGAGIHAGDILIVDRSLEPRDG-KVVIAV 94

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
             G+++ K L     + I L S N  YP   + ++ D E    +
Sbjct: 95  VNGELLVKRL-RMEKQKIYLASENSDYPPLVITDLMDFEVWGVV 137


>gi|290510869|ref|ZP_06550239.1| lambdoid prophage e14 repressor protein C2 [Klebsiella sp. 1_1_55]
 gi|289777585|gb|EFD85583.1| lambdoid prophage e14 repressor protein C2 [Klebsiella sp. 1_1_55]
          Length = 219

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 65/199 (32%), Gaps = 17/199 (8%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT---- 82
            A     +PT  ++    G            I K        + Q               
Sbjct: 25  FANMIDREPTQTSRFMGDGATKNIGDAMARHIEKCFDLPMGWLDQEHQTTNVAKSPDVSD 84

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
           T +    +P++ +  +G+   F          +  V +      +             + 
Sbjct: 85  TNRNFVMVPVISWVQAGAWTEF---------GYAEVDL-NSTENYPCPVPCGPMTYILRV 134

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              SM+  YR GD++ ++  +    GD ++     +G+   K LI   G+   L +LN  
Sbjct: 135 IGDSMIDEYRPGDMIFVDPEVPAVHGDDVIALMHDSGETTFKRLIEDAGQRY-LKALNTN 193

Query: 202 YPVDTVEMS-DIEWIARIL 219
           +P   ++++ +   I  ++
Sbjct: 194 WPEPYIKINGNCSIIGTVI 212


>gi|311232940|gb|ADP85794.1| CI repressor [Desulfovibrio vulgaris RCH1]
          Length = 232

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 65/233 (27%), Gaps = 15/233 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------- 55
             +  +++E I         T   LA    +  +S + +KR      + +          
Sbjct: 1   MSTFDEVFERIKLATNTR--TQVELAEVLDIRQSSISDAKRRNSVPSDWYMKLFEKFGLN 58

Query: 56  -ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            + + K          Q  +   +       ++          S     F  G     N 
Sbjct: 59  PDWLKKGSGPMYLRTDQGYEPLDAPVAGLVLEDPARYGDPDAKSSVATVFAMGCAVDENG 118

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLI 173
            +       +      +A        +    +M P+  KG  + +++  + +  G+   +
Sbjct: 119 VSQPLTAIAKLAVPQSFAAPGTQ-IVRVDAGAMEPVIGKGAFVGIDTTQKNIVSGELYGV 177

Query: 174 KPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
                 +  K +          L + N  +P   + +         RI+W  Q
Sbjct: 178 FMPFEGVAIKRVFLDAANARFILRTENPTHPEQYLPIDQHADRIFGRIVWVLQ 230


>gi|160946037|ref|ZP_02093263.1| hypothetical protein FAEPRAM212_03570 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443768|gb|EDP20773.1| hypothetical protein FAEPRAM212_03570 [Faecalibacterium prausnitzii
           M21/2]
          Length = 358

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 72/260 (27%), Gaps = 60/260 (23%)

Query: 7   KKIWEAIDRMAERHNLTP---SGLARKAGLDPT--SFNKSKRFGIEGRNRWPSTESIFKI 61
            ++   +  + +R+  +    S L R  G+D +    +K ++         PS   +  I
Sbjct: 111 NEVGLILAAVRKRNGYSLVTFSELLRHYGVDVSDKGISKWEKGYTT-----PSIYQLVAI 165

Query: 62  LAATNETI-------------------------CQLLDLPFSDGRTTEKKEKEIPLLYFP 96
             A N                             ++  +     +   ++  +I  +  P
Sbjct: 166 CHALNIKEGPSYFTKTFQKPALLNAIGQKKVAEYEMDLIASRRYQPGTEEPAKIDCIMMP 225

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
            S        G F  G  +  + VP    P          +        SM P Y  G I
Sbjct: 226 VSELPVSAGLGAFLEGEMFQQIQVPASSVPA-------GAEFGIYVSGDSMEPRYHSGQI 278

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS----------------IDLMSLNC 200
           + +    ++ CGD  +          K                           L+SLN 
Sbjct: 279 VWVKRCEELECGDIGIFVYDDCG-YLKKYDEHTPDKSQAEFFTDSYGVVHNQPVLVSLNT 337

Query: 201 CYPVDTVEMSD-IEWIARIL 219
            Y    +      E + ++L
Sbjct: 338 KYSPILISPEQRFEVVGKVL 357


>gi|310287284|ref|YP_003938542.1| peptidase S24-like domain [Bifidobacterium bifidum S17]
 gi|309251220|gb|ADO52968.1| Conserved hypothetical protein with peptidase S24-like domain
           [Bifidobacterium bifidum S17]
          Length = 131

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E  S    +               SM       GD L+++ ++    GD ++     G+
Sbjct: 21  EEGFSLDAHVIEHPEYTFIVTVAGDSMEGAGIFHGDWLVVDRSLTPEDGDVVVAVLD-GE 79

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +  K L+SR      L + N  YP           I  ++
Sbjct: 80  LTVKRLLSR-DGRPMLHAENPRYPDFVPSEHGDVVIWGVV 118


>gi|294673651|ref|YP_003574267.1| prophage PRU01 UmuD protein [Prevotella ruminicola 23]
 gi|294473678|gb|ADE83067.1| prophage PRU01, umuD protein [Prevotella ruminicola 23]
          Length = 153

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 42/140 (30%), Gaps = 5/140 (3%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            KK KE  +     S             G    +    +    +             + +
Sbjct: 1   MKKMKEPDIQKADVSTELELPMYDAIAAGFPITSDYPADRLDFNRDFIKHPESTFYVRVK 60

Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS--RRGRSIDLMSLNC 200
             SM       GD+ +++ A ++  G+ +      G    K L +  +    I L+  N 
Sbjct: 61  GDSMKEAGIFDGDLCLVDKAEEMVHGNIV-AAYVNGGFTVKYLDTSTKDQGFIRLVPANK 119

Query: 201 CYPVDTVE-MSDIEWIARIL 219
            +    ++   +     +++
Sbjct: 120 DFKPFIIDSSDEFTVWGKVI 139


>gi|149908619|ref|ZP_01897281.1| LexA repressor [Moritella sp. PE36]
 gi|149808453|gb|EDM68390.1| LexA repressor [Moritella sp. PE36]
          Length = 207

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 39/226 (17%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST- 55
           M + + ++  + E + +  +   + P  + +A++ G                  R P+  
Sbjct: 1   MKALTQRQAEVLELVKQHIKNTGMPPTRAEIAKELGF-----------------RSPNAA 43

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E   K LA                      +   + +     S   G    G    G   
Sbjct: 44  EEHLKALARKGHIEI----------LAGTSRGLRLLVNAEDASNDKGLPLIGQVAAGEPI 93

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 E     +        D   + +  SM  +    GD+L ++    V+ G  ++ +
Sbjct: 94  LAQEHIEAHYNVDPSMFTPNADFLLRVRGESMRNIGIMDGDLLAVHKTKNVSKGQVVVAR 153

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIA 216
               ++  K    ++G  I L   N       V+++    DIE +A
Sbjct: 154 VD-DEVTVKRF-EQQGNEILLHPENDEMSTIRVDLNFQSFDIEGVA 197


>gi|82776514|ref|YP_402863.1| DNA polymerase V subunit UmuD [Shigella dysenteriae Sd197]
 gi|301648166|ref|ZP_07247919.1| peptidase S24-like domain protein [Escherichia coli MS 146-1]
 gi|307137796|ref|ZP_07497152.1| DNA polymerase V subunit UmuD [Escherichia coli H736]
 gi|309789205|ref|ZP_07683798.1| UmuD protein [Shigella dysenteriae 1617]
 gi|331641709|ref|ZP_08342844.1| protein UmuD [Escherichia coli H736]
 gi|331652213|ref|ZP_08353232.1| protein UmuD [Escherichia coli M718]
 gi|81240662|gb|ABB61372.1| UmuD [Shigella dysenteriae Sd197]
 gi|301073752|gb|EFK88558.1| peptidase S24-like domain protein [Escherichia coli MS 146-1]
 gi|308922959|gb|EFP68473.1| UmuD protein [Shigella dysenteriae 1617]
 gi|315615980|gb|EFU96606.1| UmuD protein [Escherichia coli 3431]
 gi|331038507|gb|EGI10727.1| protein UmuD [Escherichia coli H736]
 gi|331050491|gb|EGI22549.1| protein UmuD [Escherichia coli M718]
          Length = 139

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132


>gi|153951225|ref|YP_001397532.1| putative phage repressor protein [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938671|gb|ABS43412.1| putative phage repressor protein [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 244

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 57/194 (29%), Gaps = 18/194 (9%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
              +  K      + + + P  + I  +  A +    +++                  + 
Sbjct: 45  SEATIKKWLMSKEDNKTK-PKPQYIKILCNALDIPFNEVILQDVFRNDNQVDFRYFPDIY 103

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                G+    +            V V E          I+      K    SM P+   
Sbjct: 104 ASAGFGTSSQSEEVKI--------VSVDENFLKEILDIPIKKSYDIIKINGDSMEPILSN 155

Query: 154 GDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVE 208
           GD +I++ +      ++  D ++ +    D+  K +        I L+S N  Y    V+
Sbjct: 156 GDFIIVDRSKNSLGAISNADIVIFRKN-DDLFCKKIKKEPFEDYIFLVSENKKYEDRKVD 214

Query: 209 M---SDIEWIARIL 219
                  E +  ++
Sbjct: 215 NVEFEQCEILGAVV 228


>gi|116327807|ref|YP_797527.1| repressor lexA [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116331539|ref|YP_801257.1| repressor lexA [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|122280716|sp|Q04RH1|LEXA_LEPBJ RecName: Full=LexA repressor
 gi|122284398|sp|Q053A1|LEXA_LEPBL RecName: Full=LexA repressor
 gi|116120551|gb|ABJ78594.1| Repressor lexA [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116125228|gb|ABJ76499.1| Repressor lexA [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 203

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 32/224 (14%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   + K+  +   I  + +     P+   +  + G+                       
Sbjct: 1   MKDLTDKQQAVLAFITTIIKERGFPPTIREIGDEFGITAK-----------------GAY 43

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K +                +       E         P          +F   N  +
Sbjct: 44  DHLKAIEKKGYLKTAKNQSRAIELIRQSPMESIPVQATSIPVIGRVAAGLPIFADENIES 103

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            + VP+  +  N            + Q  SM+ +    GDI I+        G+ ++   
Sbjct: 104 YIPVPDEMAKGNVP------MYALRVQGDSMIEVGIDSGDIAIIEKRDIARNGEIVVALI 157

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   KV    + + I L + N  Y     + +    I +++
Sbjct: 158 -EDEATLKVYYKEQDQ-IRLEARNPKYKPIKTKKA--TVIGKLV 197


>gi|46581311|ref|YP_012119.1| umuD protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450732|gb|AAS97379.1| umuD protein [Desulfovibrio vulgaris str. Hildenborough]
          Length = 164

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        ++ I          +    SML      GD+L+++ A+    G R++
Sbjct: 55  ADDYID--RSLDLNDHIVKHPAATFYVRASGESMLGAGVHDGDLLVVDRALDPRPG-RVV 111

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARI 218
           I    G++  K L+   G  + L   N  YP   +    D+E    +
Sbjct: 112 IAAVDGELTVKRLVR-EGGRLLLAPENAAYPPLDITGREDVEVWGVV 157


>gi|331672716|ref|ZP_08373502.1| protein UmuD [Escherichia coli TA280]
 gi|331069937|gb|EGI41306.1| protein UmuD [Escherichia coli TA280]
          Length = 139

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLILHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132


>gi|87119978|ref|ZP_01075874.1| prophage MuSo2, transcriptional regulator, Cro/CI family protein
           [Marinomonas sp. MED121]
 gi|86164680|gb|EAQ65949.1| prophage MuSo2, transcriptional regulator, Cro/CI family protein
           [Marinomonas sp. MED121]
          Length = 253

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
           +        +  SM P     D L+++   +      + I     ++  K   S    + 
Sbjct: 158 EKDLVIVWAKGDSMEPTINNNDTLVVHVGRKRPKDGHIYIFRCEDELFVKRYQSV-VGTW 216

Query: 194 DLMSLNCCYPVDTVEMSD---IEWIARIL 219
            L+S N  Y    ++  +    E I +++
Sbjct: 217 RLISDNHMYTPLDIKKEEQHQFEVIGQVV 245


>gi|86143064|ref|ZP_01061486.1| regulatory protein [Leeuwenhoekiella blandensis MED217]
 gi|85830509|gb|EAQ48968.1| regulatory protein [Leeuwenhoekiella blandensis MED217]
          Length = 244

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 66/208 (31%), Gaps = 20/208 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + E  +L+   +A + G+   +++  +           +TE +  +      +
Sbjct: 3   ISKQLKTLRESSSLSQKKVAEELGITQGAYSLIENGQN-----SITTEHLLTLSKL--YS 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +     L  S              L    + +G           N+ N   +  +     
Sbjct: 56  VPTDRILKGSHNSIMMSSSNGFVPLINVEARAGF--------IENRDNEQWMSTLDMFKL 107

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI---QVNCGDRLLIKPRTGDIVAKVL 185
             Y         + +  SM P    GDILI        ++  G   +I      +  K +
Sbjct: 108 PGYEPAQGQKLFEVEGDSMAPTLMHGDILITQHTDDLNEILDGSVAVIVTTKSVLT-KRI 166

Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDI 212
                  ++ L+S N  Y   + +M +I
Sbjct: 167 KKDLPNNALILISDNSKYESISYDMENI 194


>gi|332092221|gb|EGI97298.1| protein umuD [Shigella boydii 5216-82]
          Length = 139

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132


>gi|307126175|ref|YP_003878206.1| cI repressor [Streptococcus pneumoniae 670-6B]
 gi|306483237|gb|ADM90106.1| cI repressor [Streptococcus pneumoniae 670-6B]
          Length = 238

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 37/238 (15%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I R+     L P  LA       T+ N       +   R    E +      +   + 
Sbjct: 3   DNIKRLLSAKGLNPRQLAIALDFKYTTVNDWVN--AKTYPRIDKIEMLANFFNVSKSDLV 60

Query: 71  QLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVG--- 119
           +  +         +         ++   L +         +  +      +  +      
Sbjct: 61  ENKNAETPTTSPIQSIYDQLTPPRQEKALTYLKKQLLEQKNENIVSENIISLDDYRESKT 120

Query: 120 VPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRKGDILILNSA 162
           +P I                         I             SM P  + GD L + + 
Sbjct: 121 LPVIGVVTAGNGITQDDNLNMEKCFYTDEIPDDYDAIAYVVGNSMEPKIKNGDYLFIKNT 180

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            QV+     + +   G    K L  +      L SLN       ++ S DI  I  ++
Sbjct: 181 PQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDCADIQLDESNDIRTIGEVV 232


>gi|302875630|ref|YP_003844263.1| Peptidase S24/S26A/S26B, conserved region [Clostridium
           cellulovorans 743B]
 gi|307690163|ref|ZP_07632609.1| Peptidase S24/S26A/S26B, conserved region [Clostridium
           cellulovorans 743B]
 gi|302578487|gb|ADL52499.1| Peptidase S24/S26A/S26B, conserved region [Clostridium
           cellulovorans 743B]
          Length = 648

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 4/130 (3%)

Query: 89  EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSM 147
           E   +    S             G+                 +     +    K    SM
Sbjct: 512 EDSYVDVEESELKRIPVFNNIAAGSPILINEEESDGFFLPKAFLKNNKEFFMLKVSGDSM 571

Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           +       D +I+  + QV+      +     +   K +   +G S+ L+S N  YP   
Sbjct: 572 INANLNNEDYVIIERSAQVDNMQIAAVAI-GEEATLKRI-KIKGNSVTLISENQNYPPMM 629

Query: 207 VEMSDIEWIA 216
           V   D+  + 
Sbjct: 630 VHSKDVRILG 639


>gi|88705077|ref|ZP_01102789.1| LexA repressor [Congregibacter litoralis KT71]
 gi|88700772|gb|EAQ97879.1| LexA repressor [Congregibacter litoralis KT71]
          Length = 200

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 62/217 (28%), Gaps = 40/217 (18%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I R      + P  + +A++ G    +                + E
Sbjct: 1   MLKLTARQEQVLDVIRRHIGATGMPPTRADIAKELGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                                      G    G    G    
Sbjct: 45  EHLKALARKGAIEIVPGASRGIRLPE-----------------DAGLPIVGKVAAGEPIL 87

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + +  SM+ +    GD+L ++S    + G  ++ + 
Sbjct: 88  AAENVEDHCAVDPSMFHPPADYLLRVEGDSMINVGIHDGDLLAVHSTPVADNGAIVVARI 147

Query: 176 RTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L   R  R + L+  N      TV+++D
Sbjct: 148 D-DEVTVKRLKRGRDKRHLQLLPENDHLSPITVDLAD 183


>gi|300781920|ref|YP_003739155.1| SamA [Erwinia billingiae Eb661]
 gi|299060186|emb|CAX53376.1| Protein SamA [Erwinia billingiae Eb661]
          Length = 148

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + V        +      +      +   +SM       GD+++++ A + + GD ++  
Sbjct: 40  DYVE--SELDLNELCIRRRASTFFVRASGSSMQELGLFDGDVMVVDRAEEASQGDIVI-A 96

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
              G+   K L  +    + L+ +N  YPV      D++ +  + W 
Sbjct: 97  EVNGEFTVKRLQLQP--CLALLPMNPAYPVIY--PEDLQLLGVVTWW 139


>gi|212704955|ref|ZP_03313083.1| hypothetical protein DESPIG_03022 [Desulfovibrio piger ATCC 29098]
 gi|212671619|gb|EEB32102.1| hypothetical protein DESPIG_03022 [Desulfovibrio piger ATCC 29098]
          Length = 229

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 23/231 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I+E I      +  T   LA    +  +S + +KR            +   K+      
Sbjct: 5   EIYERIK--LATNCRTQVELAELLNIRQSSISDAKRRDSVP------GDWYMKLFERFGL 56

Query: 68  TICQLLDLPFS--------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
               L                     +     +  +    +               +   
Sbjct: 57  NPDWLKYGVGPLYLRTDKGYCPQEAPQALAETVACYGDDFTRSTVVDVYDMACVYTDEAP 116

Query: 120 VPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKP 175
            P +            ++      + +  +M PL R+G  + ++        G    +  
Sbjct: 117 RPALSISGRVPLPQAFLRPSLQVLRLRGQAMEPLLREGAYIGVDMEDLAPVSGRTYALFA 176

Query: 176 RTGDIVAKVLISRRGRS-IDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223
               +V + +     +    L + +  YP  +++ +      + R++W  Q
Sbjct: 177 PLEGVVVRQVFLDGSQRGYVLRAQSPDYPETSLDAALLQRRMLGRVVWTFQ 227


>gi|119961687|ref|YP_947146.1| SOS mutagenesis protein UmuD [Arthrobacter aurescens TC1]
 gi|119948546|gb|ABM07457.1| putative SOS mutagenesis protein UmuD [Arthrobacter aurescens TC1]
          Length = 143

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +    T     +    SM       GD LI+N A++   G  ++     
Sbjct: 37  YFDGRIDLNEHLIKDVTSTFVVRVTGQSMEGAGISDGDELIVNRALEPKDGSVVVAVLD- 95

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
           G++  K L       + L + N  YP   V   S++  
Sbjct: 96  GELTIKRL-RVTPSGVILQADNPKYPDIRVPALSELTI 132


>gi|221194461|ref|ZP_03567518.1| LexA repressor [Atopobium rimae ATCC 49626]
 gi|221185365|gb|EEE17755.1| LexA repressor [Atopobium rimae ATCC 49626]
          Length = 218

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 22/204 (10%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSKRFGIEGR--NRWPSTESIFKILA 63
           I+E I    + H   PS   + +   L  P++ +   +   E    +R P      KI+ 
Sbjct: 13  IYEYICSYTDTHGYPPSVREIGKAVCLASPSTVHMHLKVLEELGFISRDPKKPRTMKIV- 71

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               +  Q  +   S  +        +P++    +G+            N  + + +P  
Sbjct: 72  TNQTSDNQSTNKLSSISQDLNSNVITLPVIGNVAAGTPI------LAEQNVEDKLSLPTS 125

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                      +     +    SM+      GD +I+    + + G  ++          
Sbjct: 126 IVG-------DSSTFILRVHGESMINAGIFDGDYIIVKEQAEAHDGQIVVALID-DSATV 177

Query: 183 KVLISRRGRSIDLMSLNCCYPVDT 206
           K     +   I L   N       
Sbjct: 178 KTFYREKD-RIRLQPENDTMAPIY 200


>gi|254673413|emb|CBA08743.1| prophage MuMc02, peptidase, family S24 [Neisseria meningitidis
           alpha275]
          Length = 213

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 17/198 (8%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
            + +A    +    F++    G       P +E++ KI      +I  LL    +     
Sbjct: 18  QAKIASDIEMTIAGFSRIWNEGG-----LPKSETLKKIKQLKGCSIDWLLTGEGNPFPDE 72

Query: 84  EKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAI---- 133
             K+                            G     +        +            
Sbjct: 73  APKKSLAYDTLGNEVDTDEFVFVPRYDIRAAAGYGQFVDHEEPVFTMAFRRHWIENYVTR 132

Query: 134 -QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                +    +  SM  +   GD +++N +      D L +     +++ K L    G  
Sbjct: 133 NTKNLSVISVKGDSMEGVLNDGDSILVNHSENT-PRDGLYVLRINENLLVKRLQIVPGGI 191

Query: 193 IDLMSLNCCYPVDTVEMS 210
           I+++S N  YP   + ++
Sbjct: 192 INVISANEAYPAFEINLN 209


>gi|301167041|emb|CBW26620.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
           complex with UmuC [Bacteriovorax marinus SJ]
          Length = 143

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
             +   V    S        +      +    SMLP  + GDILI++ + +V     + +
Sbjct: 31  GISDDFVESYLSLDELFMRNRESTFFVRASGDSMLPEIKNGDILIVDRSYKVLDQSIVAV 90

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
                 +  K L       I L SLN  Y    + +  +++    ++
Sbjct: 91  FHNGNPLCKKFLQRE--NHILLRSLNKKYSDIQICDDDELQVFGVVI 135


>gi|126640703|ref|YP_001083687.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978]
 gi|126386587|gb|ABO11085.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978]
          Length = 167

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +   +      K    SM+       D L+++ +++    D ++      +   
Sbjct: 62  MDMNEHLIRNEAATFIVKVCSLSMINAGIDINDELVVDRSLEAKNNDIVVALI-ENEFTV 120

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L    G  I L + N  Y            +  ++
Sbjct: 121 KRL-KIEGSKIWLKAENPDYQDIYFNEGQKLIVWGVV 156


>gi|317491869|ref|ZP_07950304.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920303|gb|EFV41627.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 139

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 9/113 (7%)

Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
                  P G      + +  P     +  + A        +    SM+ +    G +L+
Sbjct: 16  PLYDDRVPAGFPSPAADYIDKP--IDLNELLIAHPAATYFVRVAGDSMVGIGIFDGSLLL 73

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           ++S+I+    D ++     G+   K  ++       L++ N  YP   +   +
Sbjct: 74  VDSSIRPKHNDIIIAC-LGGEFTVKRYVTHP--RTRLLAENPAYPPIELHEGE 123


>gi|225860041|ref|YP_002741550.1| cI repressor [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229463|ref|ZP_06963144.1| cI repressor [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255147|ref|ZP_06978733.1| cI repressor [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|225727071|gb|ACO22922.1| cI repressor [Streptococcus pneumoniae Taiwan19F-14]
          Length = 238

 Score = 69.0 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 59/238 (24%), Gaps = 37/238 (15%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I R+     L P  LA       T+ N       +   R    E +      +   + 
Sbjct: 3   DNIKRLLSAKGLNPRQLAIALDFKYTTVNDWVN--AKTYPRIDKIEMLANFFNVSKSDLV 60

Query: 71  QL-----------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +              +        + K             +       +    +   +  
Sbjct: 61  ENKNAETPTTSLIQSIYDQLTPPRQAKALTYLKKQLLEQKNENIVSENIISLDDYRESKT 120

Query: 120 VPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRKGDILILNSA 162
           +P I                         I             SM P  + GD L + + 
Sbjct: 121 LPVIGVVTAGNGITQDDNLNIEKCFYTDEIPDDYDAIAYVVGNSMEPKIKNGDYLFIKNT 180

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            QV+     + +   G    K L  +      L SLN       ++ S DI  I  ++
Sbjct: 181 PQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDCADIQLDESNDIRTIGEVV 232


>gi|294673887|ref|YP_003574503.1| UmuD protein [Prevotella ruminicola 23]
 gi|294473803|gb|ADE83192.1| umuD protein [Prevotella ruminicola 23]
          Length = 150

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 36/122 (29%), Gaps = 5/122 (4%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILN 160
                     G    +    +    +             + +  SM       GD+ +++
Sbjct: 16  ELPMYDAIAAGFPITSDYPADRLDFNRDFIKHPESTFYVRVKGDSMKEAGIFDGDLCLVD 75

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLIS--RRGRSIDLMSLNCCYPVDTVE-MSDIEWIAR 217
            A ++  G+ +      G    K L +  +    I L+  N  +    ++   +     +
Sbjct: 76  KAEEMEHGNIV-AAYVNGGFTVKYLDTSTKDQGFIRLVPANKDFKPFIIDSSDEFTVWGK 134

Query: 218 IL 219
           ++
Sbjct: 135 VI 136


>gi|149178259|ref|ZP_01856852.1| LexA repressor [Planctomyces maris DSM 8797]
 gi|148842908|gb|EDL57278.1| LexA repressor [Planctomyces maris DSM 8797]
          Length = 202

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 120 VPEIRSPHNGIYAI---QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
           +P         ++       +   K +  SM     ++GD +++        G+ ++   
Sbjct: 95  IPPAADDSQVDFSALFESGDNFCLKVKGNSMIEAQIQEGDFVVVKKQDTCQQGEIVVALV 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              +   K    +    + L   N          +D++ +  +
Sbjct: 155 DNQEATLKRFY-QEADRVRLEPANSTMSPIY--STDVQVLGVV 194


>gi|124007647|ref|ZP_01692351.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134]
 gi|123986945|gb|EAY26710.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134]
          Length = 275

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 72/232 (31%), Gaps = 30/232 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I    E++ +T   LA   G+  ++ +  +    E     P    + KI      +I
Sbjct: 7   LRYIRE--EKYKITQGALAEILGVSRSALSAYEDGRAE-----PRILLLIKIAQYFAVSI 59

Query: 70  CQLLDLP------------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
            +++++                 +     + +I  +    S    + +         +  
Sbjct: 60  DEMVNVNFAEAEQAYVTRIEQLNKYITAHQIKINRVQTEHSTPKDYLELVPQKATAGYTQ 119

Query: 118 VGVPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGD 169
                        Y I            +    SMLP  + G I+I   + +   +  G 
Sbjct: 120 GFANPEYLNTLPKYKIPFLSKGKIYRAFEIDGDSMLP-LQSGAIVIGEKIANWDDLTSGQ 178

Query: 170 RLLIKPRTGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             ++  +   IV K +  R      + L S N  Y    +E ++I  + + +
Sbjct: 179 TCVVVSKHEGIVLKKVYKRLFDYGKLLLKSENISYRPYEIEATEILELWKFV 230


>gi|254526260|ref|ZP_05138312.1| SOS-response transcriptional repressor [Prochlorococcus marinus
           str. MIT 9202]
 gi|221537684|gb|EEE40137.1| SOS-response transcriptional repressor [Prochlorococcus marinus
           str. MIT 9202]
          Length = 137

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E    +  + +        + +  SM+    +  D++I++ ++    G+ ++     
Sbjct: 31  YTEENIDLNEHLISNPFSTFFLRVKGDSMINAGIKDKDLIIVDKSLIAKPGNIIIAMID- 89

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           G+   K L  +    + L + N  YP    +   D++    ++
Sbjct: 90  GEFTIKRLSIKNDE-LYLKAENNNYPDFRFKNHIDVQIWGVVI 131


>gi|15801405|ref|NP_287422.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 EDL933]
 gi|15830932|ref|NP_309705.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str. Sakai]
 gi|16129146|ref|NP_415701.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24112570|ref|NP_707080.1| DNA polymerase V subunit UmuD [Shigella flexneri 2a str. 301]
 gi|30062700|ref|NP_836871.1| DNA polymerase V subunit UmuD [Shigella flexneri 2a str. 2457T]
 gi|74311713|ref|YP_310132.1| DNA polymerase V subunit UmuD [Shigella sonnei Ss046]
 gi|82544364|ref|YP_408311.1| DNA polymerase V subunit UmuD [Shigella boydii Sb227]
 gi|89108028|ref|AP_001808.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
           W3110]
 gi|110641408|ref|YP_669138.1| DNA polymerase V subunit UmuD [Escherichia coli 536]
 gi|110805182|ref|YP_688702.1| DNA polymerase V subunit UmuD [Shigella flexneri 5 str. 8401]
 gi|157159399|ref|YP_001462433.1| DNA polymerase V subunit UmuD [Escherichia coli E24377A]
 gi|157160686|ref|YP_001458004.1| DNA polymerase V subunit UmuD [Escherichia coli HS]
 gi|168752764|ref|ZP_02777786.1| protein UmuD [Escherichia coli O157:H7 str. EC4113]
 gi|168756548|ref|ZP_02781555.1| protein UmuD [Escherichia coli O157:H7 str. EC4401]
 gi|168771074|ref|ZP_02796081.1| protein UmuD [Escherichia coli O157:H7 str. EC4486]
 gi|168778216|ref|ZP_02803223.1| protein UmuD [Escherichia coli O157:H7 str. EC4196]
 gi|168782541|ref|ZP_02807548.1| protein UmuD [Escherichia coli O157:H7 str. EC4076]
 gi|168787684|ref|ZP_02812691.1| protein UmuD [Escherichia coli O157:H7 str. EC869]
 gi|170020449|ref|YP_001725403.1| DNA polymerase V subunit UmuD [Escherichia coli ATCC 8739]
 gi|170080811|ref|YP_001730131.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187732911|ref|YP_001879965.1| DNA polymerase V subunit UmuD [Shigella boydii CDC 3083-94]
 gi|188493785|ref|ZP_03001055.1| protein UmuD [Escherichia coli 53638]
 gi|191169122|ref|ZP_03030882.1| protein UmuD [Escherichia coli B7A]
 gi|191170936|ref|ZP_03032487.1| protein UmuD [Escherichia coli F11]
 gi|193066783|ref|ZP_03047799.1| protein UmuD [Escherichia coli E22]
 gi|193071165|ref|ZP_03052088.1| protein UmuD [Escherichia coli E110019]
 gi|194430792|ref|ZP_03063189.1| protein UmuD [Escherichia coli B171]
 gi|194437085|ref|ZP_03069184.1| protein UmuD [Escherichia coli 101-1]
 gi|195938838|ref|ZP_03084220.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809140|ref|ZP_03251477.1| protein UmuD [Escherichia coli O157:H7 str. EC4206]
 gi|208815181|ref|ZP_03256360.1| protein UmuD [Escherichia coli O157:H7 str. EC4045]
 gi|208822366|ref|ZP_03262685.1| protein UmuD [Escherichia coli O157:H7 str. EC4042]
 gi|209400795|ref|YP_002270123.1| protein UmuD [Escherichia coli O157:H7 str. EC4115]
 gi|209918422|ref|YP_002292506.1| DNA polymerase V subunit UmuD [Escherichia coli SE11]
 gi|217328507|ref|ZP_03444589.1| protein UmuD [Escherichia coli O157:H7 str. TW14588]
 gi|218553738|ref|YP_002386651.1| DNA polymerase V subunit UmuD [Escherichia coli IAI1]
 gi|218694697|ref|YP_002402364.1| DNA polymerase V subunit UmuD [Escherichia coli 55989]
 gi|218704698|ref|YP_002412217.1| DNA polymerase V subunit UmuD [Escherichia coli UMN026]
 gi|238900414|ref|YP_002926210.1| DNA polymerase V, subunit D [Escherichia coli BW2952]
 gi|253773819|ref|YP_003036650.1| DNA polymerase V subunit UmuD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161265|ref|YP_003044373.1| DNA polymerase V subunit UmuD [Escherichia coli B str. REL606]
 gi|254792660|ref|YP_003077497.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018567|ref|ZP_05432432.1| DNA polymerase V subunit UmuD [Shigella sp. D9]
 gi|256023141|ref|ZP_05437006.1| DNA polymerase V subunit UmuD [Escherichia sp. 4_1_40B]
 gi|260843475|ref|YP_003221253.1| DNA polymerase V subunit D [Escherichia coli O103:H2 str. 12009]
 gi|260854844|ref|YP_003228735.1| DNA polymerase V subunit D [Escherichia coli O26:H11 str. 11368]
 gi|261224920|ref|ZP_05939201.1| DNA polymerase V, subunit D [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257223|ref|ZP_05949756.1| DNA polymerase V subunit D [Escherichia coli O157:H7 str. FRIK966]
 gi|291282198|ref|YP_003499016.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. CB9615]
 gi|293404718|ref|ZP_06648710.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1412]
 gi|293409561|ref|ZP_06653137.1| DNA polymerase V subunit UmuD [Escherichia coli B354]
 gi|293414453|ref|ZP_06657102.1| DNA polymerase V subunit UmuD [Escherichia coli B185]
 gi|293433501|ref|ZP_06661929.1| DNA polymerase V subunit UmuD [Escherichia coli B088]
 gi|297516123|ref|ZP_06934509.1| DNA polymerase V subunit UmuD [Escherichia coli OP50]
 gi|298380361|ref|ZP_06989960.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1302]
 gi|300816870|ref|ZP_07097090.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|300821050|ref|ZP_07101199.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
 gi|300896557|ref|ZP_07115078.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|300906914|ref|ZP_07124588.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300917942|ref|ZP_07134573.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
 gi|300921855|ref|ZP_07138012.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
 gi|300928274|ref|ZP_07143811.1| peptidase S24-like domain protein [Escherichia coli MS 187-1]
 gi|300951645|ref|ZP_07165469.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
 gi|300955578|ref|ZP_07167937.1| peptidase S24-like domain protein [Escherichia coli MS 175-1]
 gi|300996032|ref|ZP_07181366.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|301017203|ref|ZP_07181984.1| peptidase S24-like domain protein [Escherichia coli MS 69-1]
 gi|301029520|ref|ZP_07192600.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
 gi|301307334|ref|ZP_07213343.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|301327108|ref|ZP_07220388.1| peptidase S24-like domain protein [Escherichia coli MS 78-1]
 gi|307310063|ref|ZP_07589713.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W]
 gi|309794268|ref|ZP_07688692.1| peptidase S24-like domain protein [Escherichia coli MS 145-7]
 gi|312971365|ref|ZP_07785540.1| protein umuD [Escherichia coli 1827-70]
 gi|331657227|ref|ZP_08358189.1| protein UmuD [Escherichia coli TA206]
 gi|331662576|ref|ZP_08363499.1| protein UmuD [Escherichia coli TA143]
 gi|331667564|ref|ZP_08368428.1| protein UmuD [Escherichia coli TA271]
 gi|331676959|ref|ZP_08377655.1| protein UmuD [Escherichia coli H591]
 gi|332279629|ref|ZP_08392042.1| UmuD protein [Shigella sp. D9]
 gi|84029417|sp|P0AG12|UMUD_ECO57 RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD'
 gi|84029418|sp|P0AG11|UMUD_ECOLI RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD'
 gi|84029419|sp|P0AG13|UMUD_SHIFL RecName: Full=Protein umuD; Contains: RecName: Full=Protein umuD'
 gi|12514880|gb|AAG56034.1|AE005335_7 SOS mutagenesis; error-prone repair; processed to UmuD'; forms
           complex with UmuC [Escherichia coli O157:H7 str. EDL933]
 gi|148125|gb|AAA24728.1| UmuD protein [Escherichia coli]
 gi|148128|gb|AAA98073.1| umuD [Escherichia coli]
 gi|1651580|dbj|BAA36030.1| DNA polymerase V, subunit D [Escherichia coli str. K12 substr.
           W3110]
 gi|1787431|gb|AAC74267.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13361142|dbj|BAB35101.1| UmuD protein [Escherichia coli O157:H7 str. Sakai]
 gi|24051468|gb|AAN42787.1| mutagenesis and repair protein [Shigella flexneri 2a str. 301]
 gi|30040948|gb|AAP16678.1| mutagenesis and repair protein [Shigella flexneri 2a str. 2457T]
 gi|73855190|gb|AAZ87897.1| UmuD [Shigella sonnei Ss046]
 gi|81245775|gb|ABB66483.1| UmuD [Shigella boydii Sb227]
 gi|110343000|gb|ABG69237.1| UmuD protein [Escherichia coli 536]
 gi|110614730|gb|ABF03397.1| SOS mutagenesis [Shigella flexneri 5 str. 8401]
 gi|157066366|gb|ABV05621.1| protein UmuD [Escherichia coli HS]
 gi|157081429|gb|ABV21137.1| protein UmuD [Escherichia coli E24377A]
 gi|169755377|gb|ACA78076.1| peptidase S24 and S26 domain protein [Escherichia coli ATCC 8739]
 gi|169888646|gb|ACB02353.1| DNA polymerase V, subunit D [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187429903|gb|ACD09177.1| protein UmuD [Shigella boydii CDC 3083-94]
 gi|187766778|gb|EDU30622.1| protein UmuD [Escherichia coli O157:H7 str. EC4196]
 gi|188013531|gb|EDU51653.1| protein UmuD [Escherichia coli O157:H7 str. EC4113]
 gi|188488984|gb|EDU64087.1| protein UmuD [Escherichia coli 53638]
 gi|189000043|gb|EDU69029.1| protein UmuD [Escherichia coli O157:H7 str. EC4076]
 gi|189356367|gb|EDU74786.1| protein UmuD [Escherichia coli O157:H7 str. EC4401]
 gi|189360079|gb|EDU78498.1| protein UmuD [Escherichia coli O157:H7 str. EC4486]
 gi|189372424|gb|EDU90840.1| protein UmuD [Escherichia coli O157:H7 str. EC869]
 gi|190900836|gb|EDV60625.1| protein UmuD [Escherichia coli B7A]
 gi|190908668|gb|EDV68256.1| protein UmuD [Escherichia coli F11]
 gi|192925573|gb|EDV80251.1| protein UmuD [Escherichia coli E22]
 gi|192955497|gb|EDV85977.1| protein UmuD [Escherichia coli E110019]
 gi|194411164|gb|EDX27589.1| protein UmuD [Escherichia coli B171]
 gi|194424068|gb|EDX40056.1| protein UmuD [Escherichia coli 101-1]
 gi|208728941|gb|EDZ78542.1| protein UmuD [Escherichia coli O157:H7 str. EC4206]
 gi|208731829|gb|EDZ80517.1| protein UmuD [Escherichia coli O157:H7 str. EC4045]
 gi|208737851|gb|EDZ85534.1| protein UmuD [Escherichia coli O157:H7 str. EC4042]
 gi|209162195|gb|ACI39628.1| protein UmuD [Escherichia coli O157:H7 str. EC4115]
 gi|209772708|gb|ACI84666.1| UmuD protein [Escherichia coli]
 gi|209772710|gb|ACI84667.1| UmuD protein [Escherichia coli]
 gi|209772712|gb|ACI84668.1| UmuD protein [Escherichia coli]
 gi|209772714|gb|ACI84669.1| UmuD protein [Escherichia coli]
 gi|209772716|gb|ACI84670.1| UmuD protein [Escherichia coli]
 gi|209911681|dbj|BAG76755.1| mutagenesis and repair protein UmuD [Escherichia coli SE11]
 gi|217318934|gb|EEC27360.1| protein UmuD [Escherichia coli O157:H7 str. TW14588]
 gi|218351429|emb|CAU97137.1| DNA polymerase V, subunit D [Escherichia coli 55989]
 gi|218360506|emb|CAQ98062.1| DNA polymerase V, subunit D [Escherichia coli IAI1]
 gi|218431795|emb|CAR12680.1| DNA polymerase V, subunit D [Escherichia coli UMN026]
 gi|238860840|gb|ACR62838.1| DNA polymerase V, subunit D [Escherichia coli BW2952]
 gi|242376963|emb|CAQ31685.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
           complex with UmuC, subunit of DNA polymerase V
           [Escherichia coli BL21(DE3)]
 gi|253324863|gb|ACT29465.1| peptidase S24 and S26 domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973166|gb|ACT38837.1| DNA polymerase V, subunit D [Escherichia coli B str. REL606]
 gi|253977380|gb|ACT43050.1| DNA polymerase V, subunit D [Escherichia coli BL21(DE3)]
 gi|254592060|gb|ACT71421.1| DNA polymerase V, subunit D [Escherichia coli O157:H7 str. TW14359]
 gi|257753493|dbj|BAI24995.1| DNA polymerase V subunit D [Escherichia coli O26:H11 str. 11368]
 gi|257758622|dbj|BAI30119.1| DNA polymerase V subunit D [Escherichia coli O103:H2 str. 12009]
 gi|260449683|gb|ACX40105.1| peptidase S24 and S26 domain protein [Escherichia coli DH1]
 gi|281600596|gb|ADA73580.1| DNA polymerase V subunit [Shigella flexneri 2002017]
 gi|284920987|emb|CBG34052.1| SOS mutagenesis and repair protein [Escherichia coli 042]
 gi|290762071|gb|ADD56032.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. CB9615]
 gi|291324320|gb|EFE63742.1| DNA polymerase V subunit UmuD [Escherichia coli B088]
 gi|291426926|gb|EFE99952.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1412]
 gi|291434511|gb|EFF07484.1| DNA polymerase V subunit UmuD [Escherichia coli B185]
 gi|291470029|gb|EFF12513.1| DNA polymerase V subunit UmuD [Escherichia coli B354]
 gi|298277803|gb|EFI19317.1| DNA polymerase V subunit UmuD [Escherichia coli FVEC1302]
 gi|299877584|gb|EFI85795.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
 gi|300304639|gb|EFJ59159.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|300317554|gb|EFJ67338.1| peptidase S24-like domain protein [Escherichia coli MS 175-1]
 gi|300359586|gb|EFJ75456.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|300400334|gb|EFJ83872.1| peptidase S24-like domain protein [Escherichia coli MS 69-1]
 gi|300401347|gb|EFJ84885.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300414855|gb|EFJ98165.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
 gi|300421781|gb|EFK05092.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
 gi|300449091|gb|EFK12711.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
 gi|300463743|gb|EFK27236.1| peptidase S24-like domain protein [Escherichia coli MS 187-1]
 gi|300526349|gb|EFK47418.1| peptidase S24-like domain protein [Escherichia coli MS 119-7]
 gi|300530644|gb|EFK51706.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|300837480|gb|EFK65240.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|300846286|gb|EFK74046.1| peptidase S24-like domain protein [Escherichia coli MS 78-1]
 gi|306909781|gb|EFN40275.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W]
 gi|308122173|gb|EFO59435.1| peptidase S24-like domain protein [Escherichia coli MS 145-7]
 gi|309701483|emb|CBJ00790.1| SOS mutagenesis and repair protein [Escherichia coli ETEC H10407]
 gi|310335962|gb|EFQ01162.1| protein umuD [Escherichia coli 1827-70]
 gi|313649361|gb|EFS13792.1| UmuD protein [Shigella flexneri 2a str. 2457T]
 gi|315060433|gb|ADT74760.1| DNA polymerase V, subunit D [Escherichia coli W]
 gi|315135819|dbj|BAJ42978.1| DNA polymerase V subunit UmuD [Escherichia coli DH1]
 gi|315254862|gb|EFU34830.1| peptidase S24-like domain protein [Escherichia coli MS 85-1]
 gi|320181810|gb|EFW56720.1| Error-prone repair protein UmuD [Shigella boydii ATCC 9905]
 gi|320183054|gb|EFW57918.1| Error-prone repair protein UmuD [Shigella flexneri CDC 796-83]
 gi|320187967|gb|EFW62634.1| Error-prone repair protein UmuD [Escherichia coli O157:H7 str.
           EC1212]
 gi|320195837|gb|EFW70462.1| Error-prone repair protein UmuD [Escherichia coli WV_060327]
 gi|320199220|gb|EFW73811.1| Error-prone repair protein UmuD [Escherichia coli EC4100B]
 gi|320637328|gb|EFX07135.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str. G5101]
 gi|320643189|gb|EFX12390.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H- str.
           493-89]
 gi|320648126|gb|EFX16802.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H- str. H
           2687]
 gi|320653960|gb|EFX22034.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320659439|gb|EFX27008.1| DNA polymerase V subunit UmuD [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320664576|gb|EFX31727.1| DNA polymerase V subunit UmuD [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323153149|gb|EFZ39413.1| UmuD protein [Escherichia coli EPECa14]
 gi|323162294|gb|EFZ48152.1| protein umuD [Escherichia coli E128010]
 gi|323165667|gb|EFZ51454.1| protein umuD [Shigella sonnei 53G]
 gi|323172469|gb|EFZ58106.1| protein umuD [Escherichia coli LT-68]
 gi|323185656|gb|EFZ71017.1| protein umuD [Escherichia coli 1357]
 gi|323379004|gb|ADX51272.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli KO11]
 gi|323937901|gb|EGB34165.1| peptidase S24 [Escherichia coli E1520]
 gi|323942461|gb|EGB38629.1| peptidase S24 [Escherichia coli E482]
 gi|323947535|gb|EGB43539.1| peptidase S24 [Escherichia coli H120]
 gi|323962760|gb|EGB58338.1| peptidase S24 [Escherichia coli H489]
 gi|323964674|gb|EGB60145.1| peptidase S24 [Escherichia coli M863]
 gi|323973420|gb|EGB68607.1| peptidase S24 [Escherichia coli TA007]
 gi|323977255|gb|EGB72342.1| peptidase S24 [Escherichia coli TW10509]
 gi|324015677|gb|EGB84896.1| peptidase S24-like domain protein [Escherichia coli MS 60-1]
 gi|324017572|gb|EGB86791.1| peptidase S24-like domain protein [Escherichia coli MS 117-3]
 gi|324117269|gb|EGC11176.1| peptidase S24 [Escherichia coli E1167]
 gi|326342722|gb|EGD66492.1| Error-prone repair protein UmuD [Escherichia coli O157:H7 str.
           1044]
 gi|326346428|gb|EGD70165.1| Error-prone repair protein UmuD [Escherichia coli O157:H7 str.
           1125]
 gi|327253865|gb|EGE65494.1| protein umuD [Escherichia coli STEC_7v]
 gi|331055475|gb|EGI27484.1| protein UmuD [Escherichia coli TA206]
 gi|331060998|gb|EGI32962.1| protein UmuD [Escherichia coli TA143]
 gi|331065149|gb|EGI37044.1| protein UmuD [Escherichia coli TA271]
 gi|331075648|gb|EGI46946.1| protein UmuD [Escherichia coli H591]
 gi|332094406|gb|EGI99455.1| protein umuD [Shigella boydii 3594-74]
 gi|332101981|gb|EGJ05327.1| UmuD protein [Shigella sp. D9]
 gi|332342762|gb|AEE56096.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332757824|gb|EGJ88151.1| protein umuD [Shigella flexneri 4343-70]
 gi|332759425|gb|EGJ89733.1| protein umuD [Shigella flexneri 2747-71]
 gi|332760265|gb|EGJ90555.1| protein umuD [Shigella flexneri K-671]
 gi|332767406|gb|EGJ97600.1| UmuD protein [Shigella flexneri 2930-71]
 gi|333005615|gb|EGK25133.1| protein umuD [Shigella flexneri K-218]
 gi|333019357|gb|EGK38640.1| protein umuD [Shigella flexneri K-304]
          Length = 139

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132


>gi|170683779|ref|YP_001744018.1| DNA polymerase V subunit UmuD [Escherichia coli SMS-3-5]
 gi|218700236|ref|YP_002407865.1| DNA polymerase V subunit UmuD [Escherichia coli IAI39]
 gi|300939591|ref|ZP_07154248.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
 gi|170521497|gb|ACB19675.1| protein UmuD [Escherichia coli SMS-3-5]
 gi|218370222|emb|CAR18018.1| DNA polymerase V, subunit D [Escherichia coli IAI39]
 gi|300455595|gb|EFK19088.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
          Length = 139

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYIE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132


>gi|325300608|ref|YP_004260525.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides salanitronis
           DSM 18170]
 gi|324320161|gb|ADY38052.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides salanitronis
           DSM 18170]
          Length = 165

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E    +  +          +    SM       GD+L+++ AI    GD ++     G+ 
Sbjct: 56  ESIDLNRELVRHPATTFYARAVGDSMKDCGIDNGDLLVIDKAIDPQEGDIVVAYID-GEF 114

Query: 181 VAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K +    +G  + LM  N  YP   V   +   +  +L
Sbjct: 115 TLKRVKFDVKGDCLWLMPANKDYPPIKVTEENNFIVWGVL 154


>gi|239904824|ref|YP_002951562.1| hypothetical protein DMR_01850 [Desulfovibrio magneticus RS-1]
 gi|239794687|dbj|BAH73676.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 273

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 60/244 (24%), Gaps = 34/244 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-----------------W 52
           W+A+  +A     +   LA  AG      +K        +                    
Sbjct: 25  WKALVELAAAQEASQGELAAFAGASQGYVSKILAGKQAPKPALRRRLAAFFGLSYEDMLA 84

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE-----------IPLLYFPPSGSG 101
              + +        E   +   +       +E   +                    + + 
Sbjct: 85  FGRQRLDAAAYPAEEGASRRCQVREPAYGGSEATGRGGEALRAWLRDLHAREDRQSAYTE 144

Query: 102 GFFDSGVFPTGNKWNT-----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
                     G          +     R+            T  +    SM P    G +
Sbjct: 145 VPLREATASMGGGSTETGDRTLSYLSFRTDWIRSKGNPEYMTAIRAFGDSMEPTIADGSV 204

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           ++++   +    +++      G +  K LI   G  + + S      +   +  D E I 
Sbjct: 205 VLIDEGRRQFVKNKVYYLRYNGQMYIKRLI-DAGGRLGIASDADANVLLVSDADDFEIIG 263

Query: 217 RILW 220
           R +W
Sbjct: 264 RCIW 267


>gi|187477795|ref|YP_785819.1| phage repressor [Bordetella avium 197N]
 gi|115422381|emb|CAJ48906.1| Putative phage repressor [Bordetella avium 197N]
          Length = 360

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 33/235 (14%)

Query: 20  HNLTPSGLARKAG--------------LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             L+P+ L++  G              +   S +++++ G        + E   +I    
Sbjct: 120 RALSPTQLSKLEGALALALGQMEIGLEVSRPSVSQAQKRGGLVNMDTAADEFSMRIPGLP 179

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-------GGFFDSGVFPTGNKWNTV 118
                     P         ++     +      +                  G     +
Sbjct: 180 PGPSQIKEPAPAYVAPRLSLEQAVAVNVAPGEHHAANDKFERVPELADVRLAAGEGIENL 239

Query: 119 GVP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD--- 169
                      RS    + A   +      +  SM P+ R G  L++   + +   D   
Sbjct: 240 TEEMTGFVQFRRSFLRSVGADGGRGRVVYAKGDSMEPIIRDGAALLVVPDLGLTLRDVAA 299

Query: 170 -RLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221
             +      G ++ K +   R        S N  +P  T+E    +  + R++WA
Sbjct: 300 GGVYAINYDGKMIVKTVARDRLTGRWVARSFNTQHPDITLEGDVSVRVLGRVVWA 354



 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          I + I ++ E+  L+   LA   G+   +  + +        +    E++ K L
Sbjct: 30 IHQRIKQLREQRQLSMEQLAELVGVSWQTVQQWENGKTA--PKRARLEAVAKAL 81


>gi|89889519|ref|ZP_01201030.1| hypothetical protein BBFL7_01334 [Flavobacteria bacterium BBFL7]
 gi|89517792|gb|EAS20448.1| hypothetical protein BBFL7_01334 [Flavobacteria bacterium BBFL7]
          Length = 254

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 17/214 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++ E    T S  A   G   ++    +R       +  + + + ++L         L 
Sbjct: 13  KKVREELGKTQSEFAELLGAGSST-ADIERG-----KKKITGKIVTELLRQFFINPLWLY 66

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
              ++    T        +                   G   N +            + I
Sbjct: 67  GNSYNKHLETTASTAPKIISMNSSDRENMIMVPIKASAGYASNVLD--TDWYQDLPAFNI 124

Query: 134 Q------TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKVL 185
                        + +  SMLP+ +  + ++  +   V     +R+ +      +V K L
Sbjct: 125 PLPQYKEGSFRAFQVRGDSMLPVLQPAEWVMGKAVESVRQANDNRIHVVVTADTVVVKKL 184

Query: 186 ISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                   ++L+SLN  YPV    +S+I+ +  +
Sbjct: 185 RKSEISDLVNLISLNRDYPVIEQPISEIKELWEV 218


>gi|291551274|emb|CBL27536.1| SOS regulatory protein LexA [Ruminococcus torques L2-14]
          Length = 191

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 37/213 (17%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +I + I+    ++  +PS   +A   G+   +  K                 + ++    
Sbjct: 3   EIKKYIEDYYLQNRQSPSTTKIAEAVGIARGTAYKY----------------LVEMAEKN 46

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                          + + ++ +   +             S  +   N    V +P    
Sbjct: 47  MIEYDGQEIRTNVTRKYSGEQTQTPIV-------GSIPCGSPQYEKENIEEYVSLPTAIF 99

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                   +      +    SM       GD++++   ++ N GD ++          K 
Sbjct: 100 G-------KGDFFILRASGQSMIEAGIDDGDLVVVKKQVEANEGDIVVALVD-NQNTLKR 151

Query: 185 LISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                  + I L   N       V   +     
Sbjct: 152 YFRDDENKKIILHPENKKMKDIIV--DECCIQG 182


>gi|332878745|ref|ZP_08446462.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683382|gb|EGJ56262.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 270

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 63/227 (27%), Gaps = 18/227 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-------WPSTESIF- 59
            + E I +  E  NLT S   ++        N   +     +           + E +  
Sbjct: 2   NVKERIKQFIEAQNLTVSAFEKEINASNGYINSISKNIGIDKLNTILEKYPKLNVEWLIT 61

Query: 60  ---KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NK 114
              ++L +                +   +      ++                  G  N 
Sbjct: 62  GKGEMLKSGGALPLLPRVEIIKPIKVEGRSLVPKVIVVDDRDNDRIPLVPVRAQAGYLNG 121

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL 171
           ++     E    ++            +    SM P  +    ++   +     ++     
Sbjct: 122 YDDERFIEQLPTYSLPTMQNGTYRMFQVSGLSMYPTLQDSSYVVGKFVEDWDMLSNNRVC 181

Query: 172 LIKPRTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           ++      ++ K ++    +  ++   S N  YP  ++ + D++ I 
Sbjct: 182 VVVTANDGVIVKRVVNSISKYGTLYCKSDNRDYPHLSIHIEDVKEIW 228


>gi|172079600|ref|ZP_02709311.2| cI repressor [Streptococcus pneumoniae CDC1873-00]
 gi|172042354|gb|EDT50400.1| cI repressor [Streptococcus pneumoniae CDC1873-00]
          Length = 238

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 61/238 (25%), Gaps = 37/238 (15%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I R+     L P  LA       T+ N       +   R    E +      +   + 
Sbjct: 3   DNIKRLLSAKGLNPRQLAIALDFKYTTVNDWVN--AKTYPRIDKIEMLANFFNVSKSDLV 60

Query: 71  QLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVG--- 119
           +  +         +         ++   L +         +  +      +  +      
Sbjct: 61  ENKNAETPTTSPIQSIYDQLTPPRQEKALTYLKKQLLEQKNENIVSENIISLDDYRESKT 120

Query: 120 VPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRKGDILILNSA 162
           +P I                         I             SM P  + GD L + + 
Sbjct: 121 LPVIGVVTAGNGITQDDNLNIEKCFYTDEIPDDYDAIAYVVGNSMEPKIKNGDYLFIKNT 180

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            QV+     + +   G    K L  +      L SLN       ++   DI  I  ++
Sbjct: 181 PQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPECADIQLDEDNDIRTIGEVV 232


>gi|167554278|ref|ZP_02348019.1| protein SamA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205321486|gb|EDZ09325.1| protein SamA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 140

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 10/130 (7%)

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151
                +          FP+          +    +       +     +    SM  +  
Sbjct: 11  PALSTAPLFTERCPAGFPSPAAD---YTEDELDLNAYCIRRPSATYFVRAIGDSMKDMGL 67

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             GD+++++ A +   GD ++ +   G+   K L  +    I L+ +N  YP       +
Sbjct: 68  HSGDLMVVDKAEKPMQGDIVIAETD-GEFTVKRLQLKP--RIALLPMNPAYPTLY--PEE 122

Query: 212 IEWIARILWA 221
           ++    ++ A
Sbjct: 123 LQIFG-VVMA 131


>gi|270160321|ref|ZP_06188975.1| putative mutagenesis protein UmuD [Legionella longbeachae D-4968]
 gi|308051568|ref|YP_003915142.1| Peptidase S24 family protein [Legionella longbeachae NSW150]
 gi|269987170|gb|EEZ93427.1| putative mutagenesis protein UmuD [Legionella longbeachae D-4968]
 gi|288859993|emb|CBJ13985.1| Peptidase S24 family protein [Legionella longbeachae NSW150]
          Length = 168

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + +        +       +     +    SM       GD L+++ +I+   G  ++
Sbjct: 58  ADDYIE--GYLDLNTKFIKHPSATFVLQAIGDSMVEAGIFSGDWLLVDRSIEATDGRIVI 115

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L  +    + L+  N  +    +       I  ++
Sbjct: 116 AAIN-GELTVKRLSKK-QGRVSLLPANPKFKPIEINEECEMVIWGVI 160


>gi|169344592|ref|ZP_02865558.1| LexA repressor [Clostridium perfringens C str. JGS1495]
 gi|169297202|gb|EDS79314.1| LexA repressor [Clostridium perfringens C str. JGS1495]
          Length = 415

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 35/113 (30%), Gaps = 10/113 (8%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
            +   +  +TV +P      N  Y         +    SM  ++     +++        
Sbjct: 298 HYACEDLIDTVYLPNQFFKPNFEY------FGLRIFGDSMNKMFDNDFTIVVRKTNSFIN 351

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218
           GD ++      +   K +  +    I L+    N  + +   +   +  +  +
Sbjct: 352 GDIVIAII-GDEATCKEI-KQVENYIYLIPHSTNPDHQIQKYQADQVIILGVV 402



 Score = 42.1 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 9/178 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    +++ LT   +A+K G+  ++ +  +   IE         S+ K++  + + + 
Sbjct: 11  ENLKSFRKQNKLTQEEMAKKLGIARSTLSYYEHGSIEPNI--FVLISLSKLMNCSLDNLI 68

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L             K  E          S    D       N      + ++       
Sbjct: 69  GLNKEKIIPMPFENNKYPETKTTETNEEESEKTNDDLSDENINATENNLIEDLLKNLKKS 128

Query: 131 YAIQTQDTRHKTQDTSMLPLYR----KGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                     K++   M   +R    + D +           D++  +    +I  K 
Sbjct: 129 KKNCDDLESSKSRADKMYEEFRMSKSRADKMFTEFQKSKQRTDKMYEEF---EISKKR 183


>gi|254362413|ref|ZP_04978522.1| possible bacteriophage transcriptional regulator [Mannheimia
           haemolytica PHL213]
 gi|153094002|gb|EDN74918.1| possible bacteriophage transcriptional regulator [Mannheimia
           haemolytica PHL213]
          Length = 225

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 11/192 (5%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTE---SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
             + N   +  IEG+ R  + E   S   I         Q             +   E+ 
Sbjct: 31  RATKNNWLKRQIEGK-RGVAFEYHYSSLPISVQQELGFAQTAVKEEPRTLVAAQTADEME 89

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
            + F    +   F +         + +G+ +      G Y   +          SM P  
Sbjct: 90  RVPFYNVQASAGFGAFNSEVYAPDDYIGLSKRWLDVRGFYL--SYLAFITASGDSMYPTI 147

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMS 210
             GD+L++N A       ++ +  +   +  K +    G  I L+S N   Y    V   
Sbjct: 148 SDGDMLLVNRATTQPKDGKIYVFRQGEQLWVKRVQGIMGG-IRLISDNKELYSPIDVIFD 206

Query: 211 ---DIEWIARIL 219
              D E I +++
Sbjct: 207 ETLDFEVIGQVV 218


>gi|158320706|ref|YP_001513213.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140905|gb|ABW19217.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
           OhILAs]
          Length = 232

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 15/224 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-----------WPSTE 56
           ++ E I     +  LT   LA+K GL      + +        +                
Sbjct: 3   RVAEKIKEARMKAKLTEKELAKKCGLTANYIIQIESGKRVVNEKLAESILNVLGEKLDFM 62

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           S+  +     +   +  +   +  +    + K         +     F      T     
Sbjct: 63  SMADVAEKEVQATPEKKNKAETIKKEDFYEIKPTEQWADALANIIKKFPIYDVKTNKVVG 122

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
              +P I     G Y          + +       +K D++++    ++       +   
Sbjct: 123 NKELPIIGKKVEG-YNWDKLLFVQASDNDMESLRIKKEDVIMVYLTSEIQNNSI-YLFEI 180

Query: 177 TGDIVAKVLISRRGRSIDLMSL-NCCYPVDTVEMSDIEWIARIL 219
               + + L       +  +SL N        E++ I+ I + +
Sbjct: 181 ENKKMIRQLRKESNNKVV-ISLGNKNNEPMVTELNKIKIIGKCV 223


>gi|33861493|ref|NP_893054.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33634070|emb|CAE19395.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 128

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E    +  + +        + +  SM+    +  D++I++ ++    G+ ++     G+
Sbjct: 23  EENIDLNEHLISNPFSTFFLRVKGDSMINSGIKDKDLIIVDKSLTAKPGNIIIAMID-GE 81

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
              K L  +    + L + N  YP  +     DI+    ++
Sbjct: 82  FTIKRLSIK-NNELYLKAENHKYPDFSFRNHIDIQIWGVVI 121


>gi|333007509|gb|EGK26987.1| protein umuD [Shigella flexneri K-272]
 gi|333019891|gb|EGK39163.1| protein umuD [Shigella flexneri K-227]
          Length = 139

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132


>gi|206602046|gb|EDZ38528.1| LexA repressor [Leptospirillum sp. Group II '5-way CG']
          Length = 222

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 62/209 (29%), Gaps = 25/209 (11%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++++E I +      L P  S +A+  G+                   P  +S    L 
Sbjct: 11  QREVFEFILKWMRETRLPPTLSEVAQFLGV-------------------PYPKSAATHLD 51

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A  +          + G       +   +     +        G    G    +  VP+ 
Sbjct: 52  ALEKKGYIQRSPGKARGILLTPLGESYQMDRLIENILEIPI-VGRIRAGRLTGSEIVPDG 110

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                     +  D   + +  SM       GD+  +    +   GD ++     G++  
Sbjct: 111 TLAVPLSLFTEKPDFALQIRGDSMNGAGILDGDMAFIRKTREARNGDLIV-AHIQGEMTL 169

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K LI  + + I L + N  Y    V   D
Sbjct: 170 KQLIVEKRQMI-LRAANPLYADIRVSPDD 197


>gi|331013546|gb|EGH93602.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 144

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165
             P G     V   E     + +  ++       K    SM+       D+++++ +   
Sbjct: 22  QVPAGFASPPVDYIEKHVSLDELAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRTA 81

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             G+ ++      + + K L       + L S N  YP   +   D   I  ++  S
Sbjct: 82  EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENSAYPSKHILEGDNLVIWGVVNYS 137


>gi|329730929|gb|EGG67305.1| repressor LexA [Staphylococcus aureus subsp. aureus 21189]
          Length = 190

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 29/196 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFN-KSKRFGIEGRNRWPS 54
           M   +    +I+  I ++ +     PS   +    GL   ++ +    R   +G  R   
Sbjct: 1   MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP 60

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           T+   + +   ++     +++  +       K      +                   N 
Sbjct: 61  TK--PRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPIT---------------AVENI 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLI 173
                +PE  +  +      +          SM       GD +I+ S      GD ++ 
Sbjct: 104 EEYFPLPEHLTSTHN-----SDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVA 158

Query: 174 KPRTGDIVAKVLISRR 189
                +   K     +
Sbjct: 159 MTEEDEATVKRFYKEK 174


>gi|323138020|ref|ZP_08073094.1| putative phage repressor [Methylocystis sp. ATCC 49242]
 gi|322396739|gb|EFX99266.1| putative phage repressor [Methylocystis sp. ATCC 49242]
          Length = 241

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 65/218 (29%), Gaps = 28/218 (12%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST----ESIFKILAATNETICQLLDLPFS 78
           + +  AR  G+   +  +++    E   + P      E +   ++              +
Sbjct: 29  SVANAARILGVPDNTLRRARAGENE--PQAPLLLALSEKLGVSMSYLLGVDDDPTPQIAT 86

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
            G     + +   + +     + G               +  P      + + A + +  
Sbjct: 87  HGEKRAPETQFAVVPHLDVRAAAGPGSVNHIVA--VKERLAFPAWML--HKLGAAKAKLA 142

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQV------------NCGDRLLIKPRTGDIVAKVLI 186
             +    SMLP    G +L++N +               +  D  +      +   K L 
Sbjct: 143 FMRASGDSMLPTIADGALLLVNESETDLPPRPPPRKSDWDHPDIYVF---GDEPRVKRLR 199

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARILWA 221
                 I ++S N  Y  + +   +++      R++W 
Sbjct: 200 RNGKGEIVVISDNLAYDPEILRGPELKRCIIHGRVIWW 237


>gi|213157772|ref|YP_002320570.1| putative transcriptional regulator, Cro/CI family [Acinetobacter
           baumannii AB0057]
 gi|301347660|ref|ZP_07228401.1| putative transcriptional regulator, Cro/CI family protein
           [Acinetobacter baumannii AB056]
 gi|301596874|ref|ZP_07241882.1| putative transcriptional regulator, Cro/CI family protein
           [Acinetobacter baumannii AB059]
 gi|213056932|gb|ACJ41834.1| putative transcriptional regulator, Cro/CI family [Acinetobacter
           baumannii AB0057]
          Length = 260

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 63/246 (25%), Gaps = 37/246 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M++   +++  AI             + LAR AG+   +         +         ++
Sbjct: 1   MSTL-QERMSLAIKHYESVTGKRFKNTELARFAGVSRANVGLWVNGPTQ----ELEGSNL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K       +   L         T          +    +    +             T 
Sbjct: 56  VKAAEFLGVSKDWLAGQGNKMIATQLDGGGAQLNVLDIEAFKQKYNIPDSEDAVKFVQTS 115

Query: 119 GVPEIR-----------------------------SPHNGIYAIQTQDTRHKTQDTSMLP 149
             P                                  +   ++   +    K    SM P
Sbjct: 116 DKPFPIQKRYVPVKAYSKMGMDGYFTDMGYDGNAGDGYVPTHSAGPRAYGIKGTGDSMFP 175

Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
             R G  ++ +   ++   + + +  + G    K  +   G  + L+S+N        EM
Sbjct: 176 AIRNGWYVVCDPDAELVPNEFVQVCLKDGRCTIKEFVGINGGVLSLLSVNGG-ERFFFEM 234

Query: 210 SDIEWI 215
            ++E I
Sbjct: 235 DEVESI 240


>gi|116667752|pdb|2HO0|A Chain A, Structure Of A Hyper-Cleavable Monomeric Fragment Of Phage
           Lambda Repressor Containing The Cleavage Site Region
          Length = 133

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSMLP------LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM         +  G +++++    V  GD  + +    +   K LI  
Sbjct: 42  DSAFWLEVEGNSMTTPTGSKTSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD 101

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 102 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 133


>gi|30995398|ref|NP_438908.2| LexA repressor [Haemophilus influenzae Rd KW20]
 gi|1170779|sp|P44858|LEXA_HAEIN RecName: Full=LexA repressor
          Length = 207

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + + R  E   + P  + ++R+ G              E   +  S +
Sbjct: 1   MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +I+                             L         G    G    G    
Sbjct: 54  GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVRAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K    SM  +    GD+L ++S   V  G  ++ + 
Sbjct: 94  AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  I L + N  +    V + +
Sbjct: 154 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 187


>gi|258541604|ref|YP_003187037.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
 gi|256632682|dbj|BAH98657.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
 gi|256635739|dbj|BAI01708.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03]
 gi|256638794|dbj|BAI04756.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07]
 gi|256641848|dbj|BAI07803.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22]
 gi|256644903|dbj|BAI10851.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26]
 gi|256647958|dbj|BAI13899.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32]
 gi|256651011|dbj|BAI16945.1| transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654002|dbj|BAI19929.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12]
          Length = 283

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 78/288 (27%), Gaps = 79/288 (27%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP---STESIFK 60
            +   + + ++R      L+   LARKAG+  T      R  ++G++R P     E I  
Sbjct: 1   MTRSPVADELERRMAHLGLSQKALARKAGVGDTYV----RDILKGKSRNPGGEKLECIAA 56

Query: 61  ILAA-------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF---------- 103
           +L               Q   +                          GF          
Sbjct: 57  VLGCTARDLLFPGVDHAQPGLMLRERRTPYLPPPFTPQESPRDTLRVHGFSSRERPENAP 116

Query: 104 -------------------FDSGVFPTGNKWNTVGVPEIRSPHNGIY------------- 131
                                    P    +  V     RS  +G Y             
Sbjct: 117 QLALDMAQIKRARSTTQPRPAMPAVPAPPGYVMVPYLAQRSITSGRYDEAQLLGSPKYFE 176

Query: 132 ---------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---------VNCGDRLLI 173
                    A          +  +M PL R GD++++++            +  G+ ++ 
Sbjct: 177 ESLITQRLNARAEDLRALNVEGQAMEPLLRDGDLVLMDTQRTTLAEPGLFVLFDGESVVC 236

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           +        +   ++    + +   N  +   T+  S ++ + R++W 
Sbjct: 237 RWAE-----RTFDAQTRPVVQISCENKRFSACTLPASRVQILGRVVWY 279


>gi|332879292|ref|ZP_08446989.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682712|gb|EGJ55612.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 254

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 76/246 (30%), Gaps = 38/246 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++  +A+  + +   LT +G+A   GL P++F++     ++       T++I  +    
Sbjct: 7   NERFIKAVSTLFKDKGLTKAGIAESLGLKPSTFSEILNNRMKA-----GTDTIAALCDKY 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF----------------FDSGVF 109
           + +   +L    +     E K +  P +    S                           
Sbjct: 62  SFSPFWILMGQGTMLIPGELKGRSKPSMALAYSPDRISELLESQKTSPYPKREKAHRVPD 121

Query: 110 PTGNKWNTVGV----------PEIRSPHNGIYAIQ---TQDTRHKTQDTSMLPLYRKGDI 156
            +      + +            +       Y I      D   + +  SM P Y  GD+
Sbjct: 122 NSNEGIPLIPLSAMAGAFTGDTSVMEYECERYVIPAFKGADFLIQVKGDSMQPTYYSGDL 181

Query: 157 LILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI 212
           +              ++  +       + K ++       + ++S N  YP   +  S  
Sbjct: 182 VACQRVPLDDLFFQWNKTYVLDTKQGPLIKRIMPGSDSSHVLIVSDNDSYPPFELSKSQF 241

Query: 213 EWIARI 218
             +A +
Sbjct: 242 HGVALV 247


>gi|241762947|ref|ZP_04761009.1| putative phage repressor [Acidovorax delafieldii 2AN]
 gi|241367899|gb|EER62118.1| putative phage repressor [Acidovorax delafieldii 2AN]
          Length = 191

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 56/194 (28%), Gaps = 33/194 (17%)

Query: 31  AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90
           AG+   +    +R+        P  ES  ++ A    +  +++              + I
Sbjct: 13  AGITHRASQSVRRWFDAPEPGLPDLESFARLCAGLGCSADEIIGALRPQAEDQAHCTQLI 72

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
            +     + +      G   T                             +     M P 
Sbjct: 73  QVANCIQAIADSLAHRGQLGTP---------------------------VQVPGDEMAPH 105

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT---- 206
            + GD++ ++S +    G+ +      G ++ + +  R  RSI L   N  Y        
Sbjct: 106 LKAGDLVFVDSTVTELAGNGIYAFTCNGSLLIRRVERRIDRSIVLKCDNKAYQDYEWTSA 165

Query: 207 --VEMSDIEWIARI 218
                  ++ + ++
Sbjct: 166 TAAARRRVKILGKV 179


>gi|241765291|ref|ZP_04763270.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN]
 gi|241365010|gb|EER59915.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN]
          Length = 144

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  +    SM       GD+L+++ A++   G  ++     G+   K L  +    
Sbjct: 51  PQATFLLRVAGDSMRDAGIDDGDLLVVDRALKPRHGCVVVAVVD-GEFTVKRLHQQF-GR 108

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
           I L + N  +P    +      I  ++ AS
Sbjct: 109 IRLRAANPTFPDILPKEGQTIEIWGVVTAS 138


>gi|145633896|ref|ZP_01789617.1| probable transcription regulator [Haemophilus influenzae 3655]
 gi|144985268|gb|EDJ92111.1| probable transcription regulator [Haemophilus influenzae 3655]
          Length = 222

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 63/210 (30%), Gaps = 14/210 (6%)

Query: 22  LTPSGLARKAGL--DPTSFNK------SKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            + + L    GL   P   NK        +   +G  +  + E  +  L    +      
Sbjct: 8   FSANELKDLEGLPNSPQGINKRARTQNWIKREKDGV-QGGAVEYHYSSLPLDVQRQLGFE 66

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                      +   E  L+    S        G F  G        P   +    +   
Sbjct: 67  QGQEVQKAPISETLNENVLMIDSFSSINVSAGFGSFNEGVTKPDEQTPYSAALLRKLGVN 126

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                       SM P    GD ++++   +   GD++ +      +  K +  R    +
Sbjct: 127 PKYAAVFWADGISMRPTIDDGDQMLVDLKRKEIKGDKIYLVQNGSSVWVKRVKIRWDG-V 185

Query: 194 DLMSLN-CCYPVDTVEMSD---IEWIARIL 219
           +L+S N   YP   +   +   ++ I +++
Sbjct: 186 ELISDNREEYPPIILSKDEAENLQVIGQLV 215


>gi|1573757|gb|AAC22408.1| lexA repressor (lexA) [Haemophilus influenzae Rd KW20]
          Length = 209

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + + R  E   + P  + ++R+ G              E   +  S +
Sbjct: 3   MRPLTARQQEVLDLLKRHLETTGMPPTRAEISRELGFKSA-------NAAEEHLKALSRK 55

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              +I+                             L         G    G    G    
Sbjct: 56  GAIEII--------------------PGASRGIRILDNSSNDEFDGLPLVGRVRAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   K    SM  +    GD+L ++S   V  G  ++ + 
Sbjct: 96  AEQHIEATYRVDADMFKPQADFLLKVYGLSMKNVGILDGDLLAVHSTKDVRNGQIVVARI 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  I L + N  +    V + +
Sbjct: 156 -EDEVTVKRLEKK-GSIIYLHAENEEFDPIVVNLEE 189


>gi|146344048|ref|YP_001201904.1| putative UV resistance protein [Pseudomonas fluorescens SBW25]
 gi|146187860|emb|CAM96189.1| putative UV resistance protein [Pseudomonas fluorescens SBW25]
          Length = 143

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           +    P        + A        + +  SMLP     G  LI++ A     GD ++  
Sbjct: 35  DHYEPPISLDELVDLRA--PHVWLGEAEGVSMLPCGIVSGSRLIIDRARTPKIGDVVV-A 91

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
                 V K L   +  S  L S N  YP       +IE    + W+
Sbjct: 92  YICNQPVVKRLDKSQNGSWVLSSDNPEYPPIE-GSEEIEVFGVVTWS 137


>gi|78184864|ref|YP_377299.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CC9902]
 gi|78169158|gb|ABB26255.1| UmuD protein. Serine peptidase. MEROPS family S24 [Synechococcus
           sp. CC9902]
          Length = 147

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 9/133 (6%)

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
           ++    L+           S   P G      + V +      +  +          K  
Sbjct: 8   QRIPRPLHASRPQQILPLVSERVPAGFPSPADDYVEM--GIDLNEQLIRHPGSTFFLKVS 65

Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM       GD+L+++ ++    G  ++     G    K L       + L + +  Y
Sbjct: 66  GESMTEAGIHDGDLLVVDRSLDPRPGRVVVAVLD-GAFTLKRLARHH-GRLRLEAAHPDY 123

Query: 203 PVDTVEM-SDIEW 214
           P   ++  SD++ 
Sbjct: 124 PPLELQHCSDVQI 136


>gi|326565429|gb|EGE15604.1| peptidase S24-like protein [Moraxella catarrhalis 103P14B1]
 gi|326573368|gb|EGE23336.1| peptidase S24-like protein [Moraxella catarrhalis 101P30B1]
          Length = 216

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 61/212 (28%), Gaps = 15/212 (7%)

Query: 24  PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTT 83
           PS  A KA   P    +  +   + RN      +    +  T     +      +D    
Sbjct: 2   PSERA-KADQFPKMIRRYSKGQAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKLAP 60

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSP-----HNGIYAIQTQ 136
             +      L    +    F+    F  G+    + V     +        + +  +   
Sbjct: 61  ITEWDNGAPLDDDEA-EIPFYKDIAFACGHGAVNDEVTHETRKLRMGKRTLSNLGVMSEN 119

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                 +D SM P  + GD + ++   +     R+         + K L       + ++
Sbjct: 120 AFAVTARDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIV 179

Query: 197 SLNCC-YPVDT-----VEMSDIEWIARILWAS 222
           S N   +P        +   + E I  +   S
Sbjct: 180 SDNAAEFPEQVATKQQISDGEFEVIGWVWSVS 211


>gi|331682667|ref|ZP_08383286.1| protein UmuD [Escherichia coli H299]
 gi|331080298|gb|EGI51477.1| protein UmuD [Escherichia coli H299]
          Length = 139

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y    +   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPIIISSEDTLDVFGVVI 132


>gi|172051552|emb|CAQ34947.1| RumA [Photobacterium damselae subsp. piscicida]
          Length = 149

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             + +  SM+       DIL+++ ++Q   GD ++  
Sbjct: 39  DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 95

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G++  K L  R    + L+  N  Y    +   +++E    +
Sbjct: 96  GIHGELTVKELQLRP--CVMLIPRNQVYEPIHIPEGTELEIFGVV 138


>gi|116070738|ref|ZP_01468007.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. BL107]
 gi|116066143|gb|EAU71900.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. BL107]
          Length = 147

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 9/133 (6%)

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
           ++    L+   +       S   P G      + V +      +  +          K  
Sbjct: 8   QRIPRPLHASRTQQILPLVSERVPAGFPSPADDYVEM--GIDLNEQLIRHPGSTFFLKVS 65

Query: 144 DTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
             SM       GD+L+++ ++    G  ++     G    K L       + L + +  Y
Sbjct: 66  GESMTEAGIHDGDLLVVDRSLDPRPGRVVVAVLD-GAFTLKRLARHH-GRLRLEAAHPDY 123

Query: 203 PVDTVEM-SDIEW 214
           P   ++  SD++ 
Sbjct: 124 PPLELQHCSDVQI 136


>gi|311064132|ref|YP_003970857.1| UmuD protein [Bifidobacterium bifidum PRL2010]
 gi|310866451|gb|ADP35820.1| UmuD protein [Bifidobacterium bifidum PRL2010]
          Length = 141

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 4/130 (3%)

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
           +++  P        + +   G     +    E  S    +               SM   
Sbjct: 1   MVHARPDHRPVPIVTEMVAAGFPSPALDGREEGFSLDAHVIEHPEYTFIVTVAGDSMEGA 60

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
               GD L+++ ++    GD ++     G++  K L+SR      L + N  YP      
Sbjct: 61  GIFHGDWLVVDRSLTPEDGDVVVAVLD-GELTVKRLLSR-DGRPMLHAENPRYPDFVPSE 118

Query: 210 SDIEWIARIL 219
                I  ++
Sbjct: 119 HGDVVIWGVV 128


>gi|317047819|ref|YP_004115467.1| peptidase S24/S26A/S26B, conserved region [Pantoea sp. At-9b]
 gi|316949436|gb|ADU68911.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. At-9b]
          Length = 146

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +        +  +    +     + +  SM      +GD+L+++SA+    GD ++  
Sbjct: 39  DYIE--RKLDLNEHLVPHPSATYFVRVEGDSMRDANISEGDLLVVDSALDAKHGDIVVAA 96

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
              G+   K L       + L+++N  Y   T  E  ++E    +
Sbjct: 97  IN-GEFTVKRLQQFP--RVQLLAMNPRYAPITPGEEEELEIFGVV 138


>gi|157413289|ref|YP_001484155.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387864|gb|ABV50569.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9215]
          Length = 137

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              E    +  + +        + +  SM+    +  D++I++ ++    G+ ++     
Sbjct: 31  YTEENIDLNEHLISNPFSTFFLRVKGDSMINAGIKDKDLIIVDKSLIAKPGNIIIAMID- 89

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           G+   K L  +    + L + N  YP    +   D++    ++
Sbjct: 90  GEFTIKRLSIKNDE-LYLKAENNNYPDFRFKNHIDVQIWGVVI 131


>gi|330989676|gb|EGH87779.1| peptidase [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 130

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGD 155
              +        G+    +            Y  +        +  SM     P   +G 
Sbjct: 1   MYRYPVLSWVAAGDWSEAIEPGGSEEYELTDYKAKGPAFWLTVKGDSMTAPTAPSVPEGS 60

Query: 156 ILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
            +++++   V  G  ++     + +   K L+   G    L  LN  YP       D   
Sbjct: 61  QILVDTRADVRPGKLVIAKLADSNEATFKKLVEDGGVRY-LKPLNSAYPTVQC-ADDCRI 118

Query: 215 IARIL 219
           I  ++
Sbjct: 119 IGVVV 123


>gi|220904141|ref|YP_002479453.1| putative phage repressor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868440|gb|ACL48775.1| putative phage repressor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 242

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 23/231 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I+E I         T   LA    +  +S + +KR            +   K+      
Sbjct: 18  EIYERIKLATNSR--TQVELAEVLDIRQSSISDAKRRNSVP------GDWFMKLFEKFGL 69

Query: 68  TICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
               L                             ++  + + G   S      +  +   
Sbjct: 70  NPDWLKQGIGPMYLRTEQGYMPQDAPAALAENAAHYGDTLARGSVVSVYHMNCDYDDEQP 129

Query: 120 VPEIRSPHNGIYA---IQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKP 175
            P +            ++      + + T+M P       L +++    V  G    +  
Sbjct: 130 RPSLEVAGKISLPHSYMKDSLAVLRMRGTNMTPTIMSDAHLGVDTMDRDVISGRVYALFA 189

Query: 176 RTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
               ++ + L          L S +  +P  T+    +    + R++W  Q
Sbjct: 190 PNEGVILRRLFLNSAQDGYVLRSDSANFPETTLTPDLLTRRLLGRVVWVFQ 240


>gi|260912753|ref|ZP_05919239.1| LexA repressor [Pasteurella dagmatis ATCC 43325]
 gi|260633131|gb|EEX51296.1| LexA repressor [Pasteurella dagmatis ATCC 43325]
          Length = 212

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
               S G    G    G         E     +        D   K    SM  +    G
Sbjct: 78  VNDDSQGLPLVGRVAAGEPILAEQHIEGTYKVDANMFKPQADFLLKVYGQSMKDIGILDG 137

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---- 210
           D+L ++S   V  G  ++ +    ++  K L  + G  I L + N  +    V+++    
Sbjct: 138 DLLAVHSTKDVRNGQVVVARI-EDEVTVKRLERK-GSVIYLHAENEEFAPIVVDLNTQPN 195

Query: 211 -DIEWIA 216
            +IE IA
Sbjct: 196 FEIEGIA 202


>gi|220923732|ref|YP_002499034.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
 gi|219948339|gb|ACL58731.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
          Length = 246

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 63/220 (28%), Gaps = 31/220 (14%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            +R       ++  AGL  T    + + G          E++ ++ +   +    +    
Sbjct: 36  IKRQGRDLKEVSLSAGLGETYVRDALKRGRG------KLENLIRVASVLGKPPEWITTSS 89

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-----------GNKWNTVGVPEIRS 125
            +   T      E        +   G     +              G    +V  P    
Sbjct: 90  KTKPGTRGAVIPEANASAPVAAPRYGGLMPVLGVAKGGSDGRLIFNGQVIESVPRPAALE 149

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK------PRTGD 179
              G YA             SM P ++ G+ + ++       GD ++++          +
Sbjct: 150 NVEGAYA-------VYVSGDSMHPRFKAGEQVWVHPHRPPKRGDDVVVQLYAEDEGDPPE 202

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              K  ++     + L   N       ++ + ++ +  ++
Sbjct: 203 GYIKEFVAWTPSMLILYQHNPA-GEFEIDRALVKSVHTVI 241


>gi|328949098|ref|YP_004366435.1| SOS-response transcriptional repressor, LexA [Treponema
           succinifaciens DSM 2489]
 gi|328449422|gb|AEB15138.1| SOS-response transcriptional repressor, LexA [Treponema
           succinifaciens DSM 2489]
          Length = 204

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 60/221 (27%), Gaps = 31/221 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   K++ E I R  E +   P+   +    G+   +         +         
Sbjct: 1   MKNLTDRQKEVLEFIARFTEENGYPPTVREIGENFGISLRAVQDHIAACQKKG------- 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               +      +    +       R T+    +IPLL    +G     +  +    + + 
Sbjct: 54  ---YLSQCQKRSRSIRVLKDDGLVRETKPFLAKIPLLGTVAAGKPLLCEENL----DGYV 106

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
            +  P +R                  +  SM       GD+ I+  A     G  ++   
Sbjct: 107 NIAEPFVRPG--------KSYFALHVRGASMANAGILDGDLAIIEQAEIATEGQIVVAVV 158

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
               I  K         I L   N  +        D++   
Sbjct: 159 N-NAITLKRFYREE-ERIRLQPENPDFQPIY--TRDVQIAG 195


>gi|311279424|ref|YP_003941655.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae
           SCF1]
 gi|308748619|gb|ADO48371.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae
           SCF1]
          Length = 143

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  + +  +     K    SM       GD+L+++SA+    G+ ++  
Sbjct: 36  DYVE--KRIDLNELLVSHPSATYFVKASGDSMVEAGIGDGDLLVVDSALTAEHGNIVIAA 93

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218
              G+   K L  R   ++ L+ +N  Y    +E    +     +
Sbjct: 94  VD-GEFTVKRLQLRP--TVQLIPMNSAYKPIVIESEGQLSIFGVV 135


>gi|184157332|ref|YP_001845671.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii
           ACICU]
 gi|260555987|ref|ZP_05828207.1| cro/CI family transcriptional regulator [Acinetobacter baumannii
           ATCC 19606]
 gi|183208926|gb|ACC56324.1| putative transcriptional regulator, Cro/CI family [Acinetobacter
           baumannii ACICU]
 gi|260410898|gb|EEX04196.1| cro/CI family transcriptional regulator [Acinetobacter baumannii
           ATCC 19606]
 gi|322507218|gb|ADX02672.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii
           1656-2]
 gi|323517194|gb|ADX91575.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 250

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 66/241 (27%), Gaps = 53/241 (21%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I +  E   L  + LAR     P +  K            P+ E++  I      +   
Sbjct: 6   RIRQKLEEKKLRAADLARATKKSPVAAKKWLDGTSV-----PTAENLKVIAKFLGVSDDW 60

Query: 72  LLDLPFSDGR-------------------------------------TTEKKEKEIPLLY 94
           LL     +                                           +++ +P+  
Sbjct: 61  LLYGGSDEQESSNNLAQLNVIDIEAFKQKYNIPDSEDAVKFVQAPAKPFPIQKRYVPVKA 120

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
           +   G  G+F    +        V            +    +    K    SM P  R G
Sbjct: 121 YSKMGMDGYFTDMGYDGNAGDGYVPT----------HTAGPRAYGIKGTGDSMFPAIRNG 170

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
             ++ +    +   + + +  + G    K  +   G  + L+S+N        EM ++E 
Sbjct: 171 WYVVCDPDADLVPNEFVQVCLKDGRCTIKEFVGINGGVLSLLSVNGG-ERFFFEMDEVES 229

Query: 215 I 215
           I
Sbjct: 230 I 230


>gi|83643488|ref|YP_431923.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidase) [Hahella chejuensis KCTC 2396]
 gi|83631531|gb|ABC27498.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidase) [Hahella chejuensis KCTC 2396]
          Length = 195

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 53/192 (27%), Gaps = 16/192 (8%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           +   + ++ ++     R           +    +  +    +    +     +    +  
Sbjct: 4   VSHVTISQWEKGETSPRGENLHL-LCSALSCQPDWLLYGKAERAGDEKIAGYQPYASLGK 62

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML---- 148
           +          +           NT    +  +       +       K    SM     
Sbjct: 63  VPLITPQQARVWKEIA-------NTFHHKDAIAWRGISVVVGPHAFAMKAVGDSMANPHG 115

Query: 149 -PLYRKGDILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
            P   +G I++++  I    G  +++    + + + K L+        LMSLN  Y    
Sbjct: 116 TPSIPEGAIVVVDPDITPVSGMVVVVGLKGSKEAIIKKLVVDGPNQY-LMSLNPDYKPIE 174

Query: 207 VEMSDIEWIARI 218
           +   +   I  +
Sbjct: 175 LT-EESAVIGVV 185


>gi|187925688|ref|YP_001897330.1| LexA repressor [Burkholderia phytofirmans PsJN]
 gi|187716882|gb|ACD18106.1| LexA repressor [Burkholderia phytofirmans PsJN]
          Length = 199

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
             PE+ +  + +     +    + +  SM  +    GD++++        GD ++     
Sbjct: 92  EPPELLTIDDYLVDDPNRTVLCRVRGESMRDVGLLDGDLVVVEKNRPTRPGDIVVAVVD- 150

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G++  K L   +  +  L   N  + V       +E +  ++
Sbjct: 151 GEMTVKTLRLDKNGAYYLEPANQDFQVIR-PQGSLEIVGVVV 191


>gi|312115168|ref|YP_004012764.1| peptidase S24/S26A/S26B, conserved region [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220297|gb|ADP71665.1| Peptidase S24/S26A/S26B, conserved region [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 129

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 3/102 (2%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            +      +  +          +    SM +     GDIL+++ AI       ++     
Sbjct: 21  YLEGELDLNKFLIRNPAATFYVRLSGDSMVMAGLFDGDILVVDRAISARHRHIVVAVVD- 79

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G++  K L    G  I+L S N  Y    +       I  ++
Sbjct: 80  GELTVKRL-WSSGGVIELRSENPAYQPIKMVEGRELVIWGVV 120


>gi|222148448|ref|YP_002549405.1| Phage repressor protein [Agrobacterium vitis S4]
 gi|221735436|gb|ACM36399.1| Phage repressor protein [Agrobacterium vitis S4]
          Length = 204

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 52/209 (24%), Gaps = 28/209 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       I   I    +   L+ +  + KAG+   +    +R    GR+   S  ++ K
Sbjct: 1   MLM----DILNRIQERLDTVGLSANAASVKAGISKDAIRNIQRACKSGRD-GISITTLIK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--NTV 118
           +      T                       L     +             G     +TV
Sbjct: 56  LAPVLQTTPSW-------------------LLEGSSNANQFRVPKISWVSAGAFDTADTV 96

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +                  + Q  SM  +   G ++ +N A +    +   I     
Sbjct: 97  HSFDEFPTIETSGLPDGDWVALEVQGDSMDRISPPGSVIFVNRADRKLSHNACYIIQDVD 156

Query: 179 D-IVAKVLISRRGRSIDLMSLNCCYPVDT 206
                K    +     + +S N  +    
Sbjct: 157 GSATYKRY-RQSPMRFEPVSTNPEHETIY 184


>gi|148988905|ref|ZP_01820320.1| Transcriptional regulator, Cro/CI family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925716|gb|EDK76792.1| Transcriptional regulator, Cro/CI family protein [Streptococcus
           pneumoniae SP6-BS73]
          Length = 245

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 68/245 (27%), Gaps = 43/245 (17%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + E I    + +  T S LA K      + +K ++  I+      + ++IFK+     
Sbjct: 6   QHVGEKIKFFRKENGWTQSVLAEKMSTSKQTISKYEKGIIK-----VNQDTIFKLADIFG 60

Query: 67  ETICQLLD--------------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
            +I                   +        ++K             +       +    
Sbjct: 61  VSIDSFFPSIIEEIATTSPIQSIYDQLTPPRQEKALTYLKKQLLEQKNENIVSENIISLD 120

Query: 113 NKWNTVGVPEI----------------RSPHNGIYAIQTQDTRH-KTQDTSMLPLYRKGD 155
           +   +  +P I                         I             SM P  + GD
Sbjct: 121 DYRESKTLPVIGVVTAGNGITQDDNLNMEKCFYTDEIPDDYDAIAYVVGNSMEPKIKNGD 180

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEW 214
            L + +  QV+     + +   G    K L  +      L SLN       ++   DI  
Sbjct: 181 YLFIKNTPQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPECADIQLDEDNDIRT 234

Query: 215 IARIL 219
           I  ++
Sbjct: 235 IGEVV 239


>gi|95020387|gb|ABF50720.1| UV repair protein [Vibrio cholerae]
          Length = 131

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             + +  SM+       DIL+++ ++Q   GD ++  
Sbjct: 21  DYVE--QTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVI-A 77

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
              G++  K L  R    + L+  N  Y    +   +++E 
Sbjct: 78  GIHGELTVKELQLRP--CVKLIPRNQAYEPIHIPEGAELEI 116


>gi|270704214|ref|ZP_06223078.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
 gi|270315814|gb|EFA27929.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
          Length = 106

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                      SM  +   G  + ++   +     ++      G +  K+L +     + 
Sbjct: 15  ENAVCVIADGNSMEXVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVK 74

Query: 195 LMSLN-CCYPVDTVEMSDIEWIARILWAS 222
           + S N   +P +  E+ DI  + ++ W S
Sbjct: 75  IRSYNTEEHPDEIAELQDISVLGKVFWYS 103


>gi|152978553|ref|YP_001344182.1| LexA repressor [Actinobacillus succinogenes 130Z]
 gi|171704242|sp|A6VMQ0|LEXA_ACTSZ RecName: Full=LexA repressor
 gi|150840276|gb|ABR74247.1| SOS-response transcriptional repressor, LexA [Actinobacillus
           succinogenes 130Z]
          Length = 210

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 59/209 (28%), Gaps = 32/209 (15%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++++  +    E   + P  + ++R+ G        +    ++   R  + E +     
Sbjct: 11  QQEVYNFLKHYIETTGMPPTRAEISRELGFRSP---NAAEEHLKALARKGAVEILA---- 63

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                                       LL        G    G    G         E 
Sbjct: 64  --------------------GTSRGIRLLLDAANDEPEGLPLIGQVAAGEPILAEQHIEG 103

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               +        D   K    SM  +    GD+L ++S   V  G  ++ +    ++  
Sbjct: 104 TYRVDPDMFKPQADFLLKVNGQSMKNIGILDGDLLAVHSTKDVRNGQVIVARI-EDEVTV 162

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           K L  + G  I L + N  +    V + +
Sbjct: 163 KRLERK-GDVIYLHAENEEFAPIVVNLRE 190


>gi|224371146|ref|YP_002605310.1| UmuD2 [Desulfobacterium autotrophicum HRM2]
 gi|223693863|gb|ACN17146.1| UmuD2 [Desulfobacterium autotrophicum HRM2]
          Length = 139

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 6/125 (4%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
                        FP+    + +        +  +          +    SM+      G
Sbjct: 13  ISCPICISSVEAGFPSPA-EDYME--GSLDLNRHLIKHPAATFFVRVSGDSMINAGIHPG 69

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           DILI++ +++      ++     G++  K L  R    I L   N  Y   ++       
Sbjct: 70  DILIVDRSLEATDKKIVIAVID-GELTVKRLRYRNA-LISLEPDNEDYQPISITQEKSLE 127

Query: 215 IARIL 219
           I  ++
Sbjct: 128 IWGVV 132


>gi|307310240|ref|ZP_07589889.1| putative phage repressor [Sinorhizobium meliloti BL225C]
 gi|306899792|gb|EFN30417.1| putative phage repressor [Sinorhizobium meliloti BL225C]
          Length = 209

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 34/212 (16%)

Query: 30  KAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE 89
           KAGL   +  K        R++ P+ +++  +      +   LL    S      + ++E
Sbjct: 2   KAGLSKDTLRKLL----ANRDQLPTGKTLSALAPTLEVSEQWLLTGQDSGPSQPVQPQQE 57

Query: 90  IPLLYFPPSGSGGFFDSGVFP--------------TGNKWNTVGVPEIRSPHNGIYAIQT 135
           + +       +                        T +  + V  P        IY+   
Sbjct: 58  VRVANIELPTNSAMPKDVPVLGTAAGSHHRGAFQLTSDAIDYVRRPPALMGTKDIYS--- 114

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG--------DIVAKVLIS 187
                  + +SM P Y +GD++ ++       GD ++++ R G        +    + + 
Sbjct: 115 ----LYVEGSSMEPQYWQGDLVYVHPHKPARSGDAVVVQCRIGDEEPDGTVEATIGLYVR 170

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           R G ++ +   N       ++   I    ++L
Sbjct: 171 RTGEALIIRKHNP-PAEIEIKNEAIISYHKVL 201


>gi|116672382|ref|YP_833315.1| SOS mutagenesis protein UmuD [Arthrobacter sp. FB24]
 gi|116612491|gb|ABK05215.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Arthrobacter sp. FB24]
          Length = 143

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 9/104 (8%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +    T     +    SM       GD LI+N A+    G  ++     
Sbjct: 37  YFDGRIDLNEHLIKDITSTYIVRVSGDSMEGAGISDGDELIVNRALDPKDGSVVIAVLD- 95

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220
           G++  K L       + L + N  YP   V   SD+     ++W
Sbjct: 96  GELTIKRL-RVTASGVVLQADNPRYPDIRVPALSDL-----VIW 133


>gi|330837533|ref|YP_004412174.1| SOS-response transcriptional repressor, LexA [Spirochaeta coccoides
           DSM 17374]
 gi|329749436|gb|AEC02792.1| SOS-response transcriptional repressor, LexA [Spirochaeta coccoides
           DSM 17374]
          Length = 209

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 49/211 (23%), Gaps = 28/211 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   K+I   I      +  +PS                 R      +  P     
Sbjct: 1   MKELTARQKEIASYISSFITENGYSPS----------------VRDVASHFHFSPKAAHD 44

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                     I +             ++      +   P          +    N  +TV
Sbjct: 45  HLCALERKGVIRRNEAGLSRTMEVISEQYAPFQEMINVPVLGNIAAGKPIMSEENMEDTV 104

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P                   K +  SM+      GD+ I+  A     GD ++     
Sbjct: 105 PIPASMLKRT-----PDPYYALKVRGESMVGAGIFDGDLAIIRHATTARNGDIVVASVGE 159

Query: 178 GD---IVAKVLISRRGRSIDLMSLNCCYPVD 205
            +   I  K         I+L + N      
Sbjct: 160 MESNAITLKRFYRD-AHMIELRAENPEIGPI 189


>gi|99081523|ref|YP_613677.1| hypothetical protein TM1040_1682 [Ruegeria sp. TM1040]
 gi|99037803|gb|ABF64415.1| hypothetical protein TM1040_1682 [Ruegeria sp. TM1040]
          Length = 216

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 25/218 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKILAATN 66
           +I   I    E   L+   LA ++G+        +R    G +    +  SI K+ +   
Sbjct: 5   EILARITERREELKLSEQALALQSGMSKDGIRNWRRRFEAGDDNAGANVSSISKVASTLG 64

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   LL         T     ++      P         G          V  P    P
Sbjct: 65  VSELWLLHGIGESKTPTISIAGKVGAGSQVPVFDAYEKGDGP--------QVECPPGIGP 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-----IV 181
           H             + +  SM P+Y  GD+L  +     +  D ++      +       
Sbjct: 117 HG--------VVAVEVEGDSMEPVYSAGDLLFYSRNGHDSVPDDVVGYKCVCEDADGMGW 168

Query: 182 AKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            K + +        L+SLN            ++W AR+
Sbjct: 169 VKQVKAGDEPGLFHLISLNPTGANMW--NVRLKWAARV 204


>gi|88809063|ref|ZP_01124572.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           WH 7805]
 gi|88787005|gb|EAR18163.1| SOS function regulatory protein, LexA repressor [Synechococcus sp.
           WH 7805]
          Length = 207

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 8/125 (6%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
           G    G    G    T    + R     +   +           SM+      GD++++ 
Sbjct: 82  GIPVLGAVAAGGLVETFDDVQERLDLAPVLETRG-LFALTVNGDSMVDAHIADGDVVLME 140

Query: 161 SAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
             I+      G  +           K         I L + N  Y    V    ++   +
Sbjct: 141 PVIEPSRLREGTIVSALVPGSGTTLKYFHRDGA-VIRLEAANPAYDPIEVPADQVQVQGK 199

Query: 218 I--LW 220
           +  +W
Sbjct: 200 LAAVW 204


>gi|157159776|ref|YP_001457094.1| helix-turn-helix/peptidase S24-like domain-containing protein
           [Escherichia coli HS]
 gi|157065456|gb|ABV04711.1| helix-turn-helix/peptidase S24-like domain protein [Escherichia
           coli HS]
          Length = 213

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 61/214 (28%), Gaps = 19/214 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +    +    +   +T + L++ AG+        +    + R R      +  +  A  
Sbjct: 5   DQFPSRVSLARQSRGMTQAQLSKLAGVVQRQIAAYEGGEAKPRLR-----VLQALANALG 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T   L             K     +L                 TG              
Sbjct: 60  TTAEWLALGEGQGPG---TKNVMPDVLVKQIPILKLDEVMHYLNTGEH-------SSSRF 109

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           H  IY +         +  +M       + +G ++  +  ++    D ++       I++
Sbjct: 110 HPAIYNVGDSAFALTIEGEAMTTSSGISFPRGSVVTFSPLVKAKSKDYVIASLDKEQILS 169

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              +       +L+SLN  YP   V   D+  +A
Sbjct: 170 FKQVYIGEIETNLVSLNPMYPNILVRNEDVSILA 203


>gi|325300200|ref|YP_004260117.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides salanitronis
           DSM 18170]
 gi|324319753|gb|ADY37644.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides salanitronis
           DSM 18170]
          Length = 148

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 3/100 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E    +  +          +    SML      GD+LI++  ++   GD ++     G+ 
Sbjct: 37  ESIDLNKELVRHPATTFYARAVGDSMLGCGIDDGDLLIIDKGLEPGDGDIVVAYID-GEF 95

Query: 181 VAKVLISRRGRS-IDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K +      S + LM  N  Y    V   +   +  +L
Sbjct: 96  TLKRVRLEPDGSCLWLMPENDSYHPIKVTEENDFIVWGVL 135


>gi|1827863|pdb|1UMU|A Chain A, Structure Determination Of Umud' By Mad Phasing Of The
           Selenomethionyl Protein
 gi|1827864|pdb|1UMU|B Chain B, Structure Determination Of Umud' By Mad Phasing Of The
           Selenomethionyl Protein
          Length = 116

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    S +      GD+LI++SAI  + GD ++  
Sbjct: 8   DYVE--QRIDLNQLLIQHPSATYFVKASGDSXIDGGISDGDLLIVDSAITASHGDIVIAA 65

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+  N  Y   T+   D ++    ++
Sbjct: 66  VD-GEFTVKKLQLRP--TVQLIPXNSAYSPITISSEDTLDVFGVVI 108


>gi|91214910|ref|ZP_01251883.1| hypothetical protein P700755_18634 [Psychroflexus torquis ATCC
           700755]
 gi|91187337|gb|EAS73707.1| hypothetical protein P700755_18634 [Psychroflexus torquis ATCC
           700755]
          Length = 151

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +             + +  SM+      GD+LI++ +++       +     G+   
Sbjct: 49  IDLNREFIKNPNSTFYARVRGRSMVGAGLNDGDLLIIDRSLEPKDDKIAVCFVD-GEFTV 107

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +   +  ++ L+  N  YP   V   +   I  ++
Sbjct: 108 KRIKKEKD-TVWLIPENKEYPPIKVTADNEFVIWGMV 143


>gi|320654549|gb|EFX22567.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 158

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 14/127 (11%)

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDI 156
                 G         E+       +                    +  SM      GD+
Sbjct: 22  DIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDL 81

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---I 212
           L ++  ++   GD +           K L   +   + ++S N  Y     +E  +   +
Sbjct: 82  LFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRV 140

Query: 213 EWIARIL 219
               +++
Sbjct: 141 FIFGKVI 147


>gi|110639449|ref|YP_679658.1| SOS mutagenesis protein UmuD [Cytophaga hutchinsonii ATCC 33406]
 gi|110282130|gb|ABG60316.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 139

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
           FP+        +      +  +    T     + +  SM+      GD+L+++ +++   
Sbjct: 26  FPSPAGD---YLDSRIDIYEYLIQHPTATFYVRVKGNSMINAAIHDGDLLVVDRSVEPKN 82

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
              ++     G+   K +       + L+  N  +    +
Sbjct: 83  NQIVVAIID-GEFTVKRISKY-NNKLYLIPENEKFKPIEI 120


>gi|327469480|gb|EGF14949.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK330]
          Length = 257

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 59/228 (25%), Gaps = 21/228 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI----------------EGRNRW 52
           I + +  + +        L+R+ G+  ++     +                   E     
Sbjct: 19  ISKKLKELLKETGKKQVELSRETGIPASTLTGYIKGTSLPIAANLEKIAIFFEVEVEEID 78

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           P    I  I     +       L         K  +         +     +        
Sbjct: 79  PRYRLIADIPQQFPDLNRIYQQLDQDRQEKGLKLLEASLTEQETQASLKDDYFP-YLVYE 137

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           N + +   PE          I   D     +  S+ P Y   D + L           + 
Sbjct: 138 NYYLSQHKPEQADLVWLNREID-YDIALWVRTDSLEPKYP-RDSVALIKQTHFELAGAIY 195

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
                G  + K + +     I L+SLN  Y    +   +  + I R++
Sbjct: 196 AIDYDGQTIIKRVFNDPTG-IRLISLNKKYSDKFIPHEEEPKLIGRVM 242


>gi|187250867|ref|YP_001875349.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Elusimicrobium minutum Pei191]
 gi|186971027|gb|ACC98012.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Elusimicrobium minutum Pei191]
          Length = 214

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 75/214 (35%), Gaps = 13/214 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I +     NLT   LA+K GL  ++  + +        +  + E + K L    + 
Sbjct: 3   IGKKILQARRELNLTQKELAQKIGLPGSTIARWETDSFSPSPK--NIEKLSKALGREYKY 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLL--YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +  +  F+  +  + + ++   +  +           +GVF  G     +   +    
Sbjct: 61  FYETQEDIFTVFKKAKGEIRDNENIFSFHSDETKNEIKFAGVFKKGAA---IFFEDDDIS 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGDIVAKV 184
           ++    I  Q      +D S+ P + K D L + +  ++      +  I     + +   
Sbjct: 118 NSKNKTIPPQKLFFNVKDNSLSPDFEKTDTLEIITTKEIEPEYNGKYYIVEIKDEQLIYK 177

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                   I+L S+        +  + +E + R+
Sbjct: 178 CTVLGND-INL-SI--AGKTKRIPKNKVEILGRV 207


>gi|218667986|ref|YP_002426169.1| umuD protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218520199|gb|ACK80785.1| umuD protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 164

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDR 170
           G     + +      H             +    SM  +    GD ++++ AI    G  
Sbjct: 57  GYVEQQIDLNTHLIQHREA------TFILRVSGWSMRDVGIFDGDEILVDRAITPVDGKI 110

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++     GD+  K L    G ++ L++ N  +P   ++  +   I  ++
Sbjct: 111 VVAAIN-GDLTVKRLRRI-GSAVHLVAENPEFPTIILKEGEELCIWGVV 157


>gi|121583547|ref|YP_973966.1| putative phage repressor [Polaromonas naphthalenivorans CJ2]
 gi|120596791|gb|ABM40224.1| putative phage repressor [Polaromonas naphthalenivorans CJ2]
          Length = 206

 Score = 67.9 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 58/205 (28%), Gaps = 16/205 (7%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            L+R+  +   +  + K          P   ++ +I         QLL            
Sbjct: 2   ELSRRMDVADGTLGRIKYASGN-----PQLANLVQIACFFKLRPWQLLVKDGYKLPRDFD 56

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-------- 137
             K+ P+             +          +     +    +   A   +         
Sbjct: 57  PSKQ-PVPKIEDGHVRISRFNARPSAILGSESESFSMVLGHIDVAEAWARKHLGVQLDSV 115

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLM 196
                    M P   +GD+  +++  +    D + +      ++ K L +    R I + 
Sbjct: 116 RAVTVAGDGMSPTINEGDLAFIDADCRRFETDGIYVVLFNEAVMTKRLSADFATRKIHVR 175

Query: 197 SLNCCYPVDTVEMSDIEWIARIL-W 220
           S N  +    V  +++    R+L W
Sbjct: 176 SDNDKHDPQLVAQNELTICGRVLAW 200


>gi|167832382|ref|YP_001686773.1| prophage repressor [Halomonas phage phiHAP-1]
 gi|166836356|gb|ABY90405.1| prophage repressor [Halomonas phage phiHAP-1]
          Length = 234

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 73/222 (32%), Gaps = 18/222 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTS--FNKSKRFGIEGRNRWPSTESIFKILAAT 65
            I  AI  +  +  LT   L    G D  +   ++ +   +      PS  ++  I  A 
Sbjct: 14  DIGSAIRHLRRQQGLTLQELCDAIGNDMQTGYLSRVETNKLN-----PSVYTVADIARAL 68

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             T+ +LL    +     ++ +    +  FP   +   +  G++P      T+  P    
Sbjct: 69  GTTVDELLKGSNTFHA-YKETKACRKIPVFPFVAAANPYAVGMYPPTTALTTIPSPVDVP 127

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRTGDI- 180
             +    +     +   +  S       ++   D   L    Q+  G  +++  +   + 
Sbjct: 128 LGSFGLILDDDSMQSS-EGLSFSQGSVVIFAPYDKNRLIREKQIQLGQYVIVHSQNARLG 186

Query: 181 ---VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              + + L++       L   N  YP+  +    +     ++
Sbjct: 187 TPPLFRQLVADGAE-YMLRPRNSRYPIRPLPPEPVFVGYAVV 227


>gi|282895783|ref|ZP_06303870.1| SOS-response transcriptional repressor, LexA [Raphidiopsis brookii
           D9]
 gi|281199283|gb|EFA74149.1| SOS-response transcriptional repressor, LexA [Raphidiopsis brookii
           D9]
          Length = 203

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLI 186
             I  Q    +    SM   L   GD++ L    +      G  +  +        K   
Sbjct: 105 LPIPPQSYALRVAGDSMIEDLIADGDLVFLRPVSEPNLMKNGTIVAARVEGYGTTLKRFY 164

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G ++ L   N  Y    V    +E    ++
Sbjct: 165 -LEGDTVTLKPANSNYQPIQVPAIQVEIQGSLV 196


>gi|206900105|ref|YP_002251537.1| LexA repressor [Dictyoglomus thermophilum H-6-12]
 gi|206739208|gb|ACI18266.1| LexA repressor [Dictyoglomus thermophilum H-6-12]
          Length = 199

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 50/172 (29%), Gaps = 8/172 (4%)

Query: 51  RWPSTESIFKILA-ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           R P+   + K L   ++ +    +      G  ++ K     L              G  
Sbjct: 26  RIPTVREVTKALGLNSSGSGYFHMKALVEKGYLSQDKNGRFYLKNLINEEVIYLPLIGTI 85

Query: 110 PTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNC 167
             G    +    E   P    +  I  +    K +  SM       GD++I+        
Sbjct: 86  RAGIPVESPEYIEEYIPVPKNFVKIPEKSFLLKVRGDSMEGAHILDGDLIIVQKQDTAQK 145

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++     G+   K L S       L   N  Y          + I +++
Sbjct: 146 GEIVVALKD-GESTVKFL-SENYGIPCLKPANPRYSEIYPP---FKIIGKVV 192


>gi|46579557|ref|YP_010365.1| Cro/CI family transcriptional regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46448972|gb|AAS95624.1| transcriptional regulator, Cro/CI family [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311233373|gb|ADP86227.1| putative phage repressor [Desulfovibrio vulgaris RCH1]
          Length = 255

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 72/230 (31%), Gaps = 22/230 (9%)

Query: 4   FSHKKIWEAIDRMAERHN-LTPS---GLARKAGLDPT--SFNKSKRFGIEGRNRWPSTES 57
            SH+ I+ A     +    + P+     AR+  +      F + ++   +       + +
Sbjct: 31  LSHQAIYSA-----KSKGRIPPAWIYEAARRYDVSADWLFFGRGRKKVADPDESADPSPT 85

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + K        +      P         +  +  ++  P   +     +G F TG     
Sbjct: 86  LEK-AEVARRLLATRQATPLDVEHDGIIECADCQIMMMPMVEARLSAGTGSFETGANVER 144

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPR 176
                 R          +Q    +    SM P  +  D+++++ +      G  L     
Sbjct: 145 RY--AFRMDFLMRKGCPSQMVLMRVAGDSMEPEVKHNDVVLIDQSQLTPRPG-ALYAVGV 201

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-----MSDIEWIARILWA 221
              +  K LI+     + + S N  YP   V+      + I  I R +W 
Sbjct: 202 EDMVYLK-LINATPGKLVMTSYNAAYPPLEVDARGDLANGIRIIGRAVWV 250


>gi|237803412|ref|ZP_04590997.1| transcriptional regulator PrtR [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025393|gb|EGI05449.1| transcriptional regulator PrtR [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 260

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 56/244 (22%), Gaps = 35/244 (14%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +   +      LT +  AR   L +  +    K     G   + + E    ++   +  
Sbjct: 10  GQRFRQALADSGLTGAEFARVLDLENEQNITNWK---SRGVPAYMAGEVARTLVVERDWL 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             + + +          +        +       +              +      S   
Sbjct: 67  EGKDVPMRTDTTARNPTRAAANEPPLYVLEPLAPWDSDTPLENDEVELRLYKEVELSSGP 126

Query: 129 GIYA------------------------IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
           G  A                          +          S  PL   G  + +++ + 
Sbjct: 127 GKVARTEVQEVSGPKLRFSRATMRTCGVDPSNAVFATNNGDSNHPLILSGATVGIDTGMT 186

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVDTVEMSD-----IEWIARI 218
                 +      G    K L       I + S N   Y  +  E  D     I  + RI
Sbjct: 187 RIIDGEIYAIDHDGHFRIKFLQRLPAG-IRMKSFNSSEYADEDYEFDDILAQRIVILGRI 245

Query: 219 LWAS 222
            W S
Sbjct: 246 FWWS 249


>gi|212711234|ref|ZP_03319362.1| hypothetical protein PROVALCAL_02306 [Providencia alcalifaciens DSM
           30120]
 gi|212686129|gb|EEB45657.1| hypothetical protein PROVALCAL_02306 [Providencia alcalifaciens DSM
           30120]
          Length = 137

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + E  + ++ +          + +  SM+      GD++I++SA+    GD ++     
Sbjct: 32  YMEERINLNSTLIKHPDSTYMLRVEGNSMIDANINDGDVVIVDSALVAKDGDIVIASVD- 90

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
           G+   K L S       L+ +N  +    + +  D++    +
Sbjct: 91  GEFTVKRLKSYPP---MLIPMNPDFQPIHIGDTQDLQIFGVV 129


>gi|253722209|pdb|1I4V|A Chain A, Solution Structure Of The Umud' Homodimer
 gi|253722210|pdb|1I4V|B Chain B, Solution Structure Of The Umud' Homodimer
          Length = 115

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 8   DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 65

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 66  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 108


>gi|332162334|ref|YP_004298911.1| putative prophage repressor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606400|emb|CBY27898.1| putative cI prophage repressor protein [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666564|gb|ADZ43208.1| putative prophage repressor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 207

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 63/204 (30%), Gaps = 17/204 (8%)

Query: 2   TSFSHKKI--WEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
              + +++   + +  +     +   ++   +A + G+  ++ N+             + 
Sbjct: 4   KPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVT--NA 61

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNK 114
            +  K+L     +    L    +    +        L   PP   +  +        GN 
Sbjct: 62  AAFAKVLNEPISSFSPSLATELAKMAESLSISSLNRLNDKPPGTVANSYPLISWISAGNW 121

Query: 115 WNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167
           + T+    + +I                 + +  SM       + +G I++++   +   
Sbjct: 122 YETIEPYQLSDIEIWPESTKNAHDSAFWLRVKGDSMTSPSGISFPEGMIILVDPEKEPIP 181

Query: 168 GDRLL-IKPRTGDIVAKVLISRRG 190
           G+ ++       +   K LI   G
Sbjct: 182 GNFVVAKLTDDNEATFKKLIVDAG 205


>gi|260435498|ref|ZP_05789468.1| protein UmuD [Synechococcus sp. WH 8109]
 gi|260413372|gb|EEX06668.1| protein UmuD [Synechococcus sp. WH 8109]
          Length = 143

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V V      +  +    T          SM       GD+L+++ ++    G  ++
Sbjct: 34  ADDYVDV--GIDLNEQLIRHPTSTFFLHVSGESMTDAGIHDGDLLVVDRSLDPRPGQVVV 91

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G    K L+  R   + L + +  YP   +    +++ 
Sbjct: 92  AVLD-GAFTLKRLMRHR-GRLRLEAAHPDYPPLELHRCGEVQI 132


>gi|182678381|ref|YP_001832527.1| putative phage repressor [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182634264|gb|ACB95038.1| putative phage repressor [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 225

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 21/217 (9%)

Query: 7   KKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            + +  +    ++    + +  AR  G +  ++   +        R    E   K    +
Sbjct: 2   DQPFHRLQIARQQAGFESATEAARAFGWNENTYRSHENGER--GLRIAIAERYAKAFDVS 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              +    +         ++ +  + L+    +G+    +    P G  ++ V +P    
Sbjct: 60  AAWLLTG-ENEEDRQAPEKEPKYTVRLVGRIGAGAVIDSEFEQEPPG-GFDEVQIP---- 113

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVA 182
                Y   +     +    SM P Y  GDI+I   +        G    ++   G    
Sbjct: 114 -----YPAPSGAVAFEIVGDSMWPRYDPGDIVICWKVAQTRTEADGWEAAVRLTDGRRYL 168

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +        DL+S N       +    IEW  ++ 
Sbjct: 169 KTIRRVSKDRFDLISHNAS----PIHNVQIEWACKVF 201


>gi|227508752|ref|ZP_03938801.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191785|gb|EEI71852.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 263

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 65/229 (28%), Gaps = 25/229 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  + ++++L+ + LAR+ G     S ++ +      +      E +  +       +
Sbjct: 33  ENLRYLRKKYHLSQTTLARRLGRKSVASVSEWESGKYTPKL--AIIEKVAALFEVDVTDL 90

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT---VGVPEIRSP 126
                   ++ ++  +    +     P      +            ++   +  P     
Sbjct: 91  LYRELGKANEPKSRPESFLSMYSKLTPDRQRKVYQRILKLQETESEDSQTPIEQPVTILK 150

Query: 127 HNGIYAI----------------QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                                     D   K   +SMLP +    I+ + +A +   G  
Sbjct: 151 LEKTDLAITDEEESVNRPQKAGKPNFDFAVKIIGSSMLPNFHDQQIVFITAATKAENGQI 210

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218
           +L K   G    +        +  LM  N       ++   D   I  +
Sbjct: 211 VLAKVD-GKYYIRRYEKTSEGA-WLMPFNQDEAQVKIQDDTDFRLIGVV 257


>gi|261885710|ref|ZP_06009749.1| hypothetical protein CfetvA_11544 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 207

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 54/209 (25%), Gaps = 32/209 (15%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  + E + ++    A++ G+   +    +      + +    E + K        
Sbjct: 2   IGNKIRALREENGISQKEFAKEFGIAYGTLQSYEYGLT--KPKTDFIEQLAKKFKIDVNY 59

Query: 69  ICQLLDLPFSDGRTTEK----------------------KEKEIPLLYFPPSGSGGFFDS 106
                     +                             + EI +     +    FF  
Sbjct: 60  FYDDCRQYVVNNDKKLSSICRQSPNLSPSKPLNALNLKKSQNEIHINIKEDTVYVPFFKD 119

Query: 107 GVFPTGNKWNTVG-----VPEIRSPHNGIYAIQT--QDTRHKTQDTSMLPLYRKGDILIL 159
           G    G            +P  +     ++   +            SM P   +G++++ 
Sbjct: 120 GAVSAGFGTEDFANDCDFLPFKKQDLRLMFNAHSTANLAVIPCVGNSMQPTIEEGELVVF 179

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + G   +++    ++  K L  R
Sbjct: 180 QQDGTQSEGAIYVVRF-ENELFVKRLKKR 207


>gi|323161382|gb|EFZ47289.1| peptidase S24-like family protein [Escherichia coli E128010]
 gi|323945404|gb|EGB41458.1| peptidase S24 [Escherichia coli H120]
          Length = 197

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 8/180 (4%)

Query: 43  RFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSG 101
           RF  +G  +         I    +  +  L     +   T +         +   P  S 
Sbjct: 11  RFMGDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISW 70

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
               +        ++ V +      +             +    SM+  YR GD++ ++ 
Sbjct: 71  VQAGAWK---EVGYSEVDL-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDP 126

Query: 162 AIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            +    GD ++     TG+   K LI    +   L +LN  +P   ++++ +   I  ++
Sbjct: 127 EVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 185


>gi|164688219|ref|ZP_02212247.1| hypothetical protein CLOBAR_01864 [Clostridium bartlettii DSM
           16795]
 gi|164602632|gb|EDQ96097.1| hypothetical protein CLOBAR_01864 [Clostridium bartlettii DSM
           16795]
          Length = 79

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 1/73 (1%)

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
            +       D ++++     +    ++          K      G ++ L   N      
Sbjct: 1   MINAGILNNDYVVVDKGSTASNSQIVVALVNKESATVKRFFK-EGSTVRLQPENEFMEPI 59

Query: 206 TVEMSDIEWIARI 218
            +   D+E +  +
Sbjct: 60  ILNERDVEIVGTV 72


>gi|26247496|ref|NP_753536.1| DNA polymerase V subunit UmuD [Escherichia coli CFT073]
 gi|91210396|ref|YP_540382.1| DNA polymerase V subunit UmuD [Escherichia coli UTI89]
 gi|117623397|ref|YP_852310.1| DNA polymerase V subunit UmuD [Escherichia coli APEC O1]
 gi|218558107|ref|YP_002391020.1| DNA polymerase V subunit UmuD [Escherichia coli S88]
 gi|227886404|ref|ZP_04004209.1| DNA polymerase V subunit UmuD [Escherichia coli 83972]
 gi|237705138|ref|ZP_04535619.1| mutagenesis and repair protein UmuD [Escherichia sp. 3_2_53FAA]
 gi|301046821|ref|ZP_07193939.1| peptidase S24-like domain protein [Escherichia coli MS 185-1]
 gi|306813923|ref|ZP_07448096.1| DNA polymerase V subunit UmuD [Escherichia coli NC101]
 gi|26107897|gb|AAN80096.1|AE016759_370 UmuD protein [Escherichia coli CFT073]
 gi|85376582|gb|ABC70509.1| UmuD [Escherichia coli]
 gi|91071970|gb|ABE06851.1| UmuD protein [Escherichia coli UTI89]
 gi|115512521|gb|ABJ00596.1| mutagenesis and repair protein UmuD [Escherichia coli APEC O1]
 gi|218364876|emb|CAR02572.1| DNA polymerase V, subunit D [Escherichia coli S88]
 gi|222032978|emb|CAP75718.1| Protein umuD [Escherichia coli LF82]
 gi|226899895|gb|EEH86154.1| mutagenesis and repair protein UmuD [Escherichia sp. 3_2_53FAA]
 gi|227836608|gb|EEJ47074.1| DNA polymerase V subunit UmuD [Escherichia coli 83972]
 gi|294491049|gb|ADE89805.1| protein UmuD [Escherichia coli IHE3034]
 gi|300301240|gb|EFJ57625.1| peptidase S24-like domain protein [Escherichia coli MS 185-1]
 gi|305852560|gb|EFM53008.1| DNA polymerase V subunit UmuD [Escherichia coli NC101]
 gi|307553233|gb|ADN46008.1| protein UmuD [Escherichia coli ABU 83972]
 gi|307627299|gb|ADN71603.1| DNA polymerase V subunit UmuD [Escherichia coli UM146]
 gi|312945809|gb|ADR26636.1| DNA polymerase V subunit UmuD [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288605|gb|EFU48003.1| peptidase S24-like domain protein [Escherichia coli MS 110-3]
 gi|315290751|gb|EFU50123.1| peptidase S24-like domain protein [Escherichia coli MS 153-1]
 gi|323187408|gb|EFZ72717.1| protein umuD [Escherichia coli RN587/1]
 gi|323949706|gb|EGB45592.1| peptidase S24 [Escherichia coli H252]
 gi|323953967|gb|EGB49766.1| peptidase S24 [Escherichia coli H263]
 gi|324006037|gb|EGB75256.1| peptidase S24-like domain protein [Escherichia coli MS 57-2]
          Length = 139

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L  +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLTPMNSAYSPITISSEDTLDVFGVVI 132


>gi|12084966|ref|NP_073259.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|17233502|ref|NP_490545.1| SamA [Salmonella typhimurium LT2]
 gi|60115500|ref|YP_209292.1| SamA protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161867914|ref|YP_001598095.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|167995153|ref|ZP_02576243.1| protein SamA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|224504282|ref|YP_002635622.1| SamA [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261888739|ref|YP_003264428.1| mutagenesis by UV and mutagens; related to umuDC operon [Salmonella
           enterica subsp. enterica serovar Typhimurium]
 gi|305696890|ref|YP_003864205.1| mutagenesis by UV and mutagens related to umuDC operon [Salmonella
           enterica subsp. enterica serovar Typhimurium]
 gi|134195|sp|P23831|SAMA_SALTY RecName: Full=Protein samA; Contains: RecName: Full=Protein samA'
 gi|217088|dbj|BAA14225.1| UmuD [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|12060336|dbj|BAB20542.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|16445323|gb|AAL23541.1| mutagenesis by UV and mutagens; related to umuDC operon [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|45359324|gb|AAS58911.1| SamA protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161087293|gb|ABX56763.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|205327113|gb|EDZ13877.1| protein SamA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|224470991|gb|ACN48820.1| SamA [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261857327|emb|CBA11400.1| mutagenesis by UV and mutagens; related to umuDC operon [Salmonella
           enterica subsp. enterica serovar Typhimurium]
 gi|267990091|gb|ACY86488.1| SamA [Salmonella enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|304376192|dbj|BAJ15354.1| mutagenesis by UV and mutagens related to umuDC operon [Salmonella
           enterica subsp. enterica serovar Typhimurium]
 gi|312915775|dbj|BAJ39748.1| protein SamA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|322713005|gb|EFZ04577.1| SamA protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323132995|gb|ADX20424.1| mutagenesis protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326626282|gb|EGE32626.1| protein samA [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332991451|gb|AEF10433.1| mutagenesis by UV and mutagens [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 140

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 9/124 (7%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
             +          FP+          E    +             +    SM  +    G
Sbjct: 14  STAPLFTERCPAGFPSPAAD---YTEEELDLNAYCIRRPAATFFVRAIGDSMKEMGLHSG 70

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           D+++++ A +   GD ++ +   G+   K L  +    I L+ +N  YP       +++ 
Sbjct: 71  DLMVVDKAEKPMQGDIVIAETD-GEFTVKRLQLKP--RIALLPINPAYPTLY--PEELQI 125

Query: 215 IARI 218
              +
Sbjct: 126 FGVV 129


>gi|156147239|gb|ABU53817.1| cje0215 [Campylobacter phage CGC-2007]
 gi|321442478|gb|ADW85791.1| phage repressor protein, putative [Campylobacter jejuni]
          Length = 113

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 112 GNKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           G   + +   E I       +    +         SM PL + G I +++          
Sbjct: 1   GGINDLIDCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSI 60

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +       +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 61  CV-INTRDGLFIKQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 107


>gi|188994990|ref|YP_001929242.1| putative error-prone repair: SOS-response transcriptional repressor
           UmuD homolog [Porphyromonas gingivalis ATCC 33277]
 gi|188594670|dbj|BAG33645.1| putative error-prone repair: SOS-response transcriptional repressor
           UmuD homolog [Porphyromonas gingivalis ATCC 33277]
          Length = 141

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              ++ +          + +  SM       GDIL+++ +++   GD  +     G+   
Sbjct: 38  IDLNHELITHPYSTFYGRVKGNSMEDAHVFDGDILVIDKSLEARDGDMAVCFLD-GEFTL 96

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +   +   I L   N  YP   V   +   I  I+
Sbjct: 97  KTI-RIKSEEILLEPANPDYPTIHVSADNDFVIWGIV 132


>gi|217327196|ref|ZP_03443279.1| transcriptional regulator, XRE family [Escherichia coli O157:H7
           str. TW14588]
 gi|217319563|gb|EEC27988.1| transcriptional regulator, XRE family [Escherichia coli O157:H7
           str. TW14588]
          Length = 190

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 27/200 (13%)

Query: 27  LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKK 86
           +A+  G    S    +    E   R  S +    + AA   +  +++         ++  
Sbjct: 1   MAKLCGWAAPS----RLGNYELGTRKVSADDALVLGAALGVSPAKIMFGED-----SDAV 51

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
            ++     F    +G F + G +   +    V      S          +    + +  S
Sbjct: 52  FRQYEYPLFSSVQAGPFSEVGSYTASDAKAWVPTTTKASE---------KAFWLEVKGHS 102

Query: 147 ML------PLYRKGDILILNSAIQVNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMSLN 199
           M       P + +G +++++ A  V  GD  +       +   K      G S  L+ LN
Sbjct: 103 MTAPQGVRPSFPEGMLILVDPAEPVESGDFCVASANGDSEATFKKYEKDAGVSY-LVPLN 161

Query: 200 CCYPVDTVEMSDIEWIARIL 219
             Y     + S    I +++
Sbjct: 162 PAYRTLDCDHS-CRIIGKVV 180


>gi|113953219|ref|YP_730811.1| UmuD protein [Synechococcus sp. CC9311]
 gi|113880570|gb|ABI45528.1| UmuD protein [Synechococcus sp. CC9311]
          Length = 147

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + + V      +  +    +     +    SM       GD+L+++ ++  + G  ++
Sbjct: 38  ADDYIDV--GIDLNEQLIRHPSSTFFLRVSGDSMTGEGIHHGDLLVVDRSLDPHPGRVVV 95

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G    K L+  R   + L + N  YP   +    D++ 
Sbjct: 96  AILD-GAFTLKRLVRHR-GHLRLEAANPDYPHLDLHHCGDVQI 136


>gi|150017433|ref|YP_001309687.1| prophage repressor [Clostridium beijerinckii NCIMB 8052]
 gi|149903898|gb|ABR34731.1| putative prophage repressor [Clostridium beijerinckii NCIMB 8052]
          Length = 512

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 5/104 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172
               +   +  S               K +  SM+      GD ++++        D + 
Sbjct: 404 INEYIE--DSYSLPKDWIRTSKDVFMLKVKGDSMINKNIYDGDYVVISKQNMPRIKDIV- 460

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                G+   K         I L+  N  Y    +E      + 
Sbjct: 461 AVDIEGEATLKTYKVI-DGKIALIPENDKYQPIIIEDQQFNVLG 503


>gi|325271052|ref|ZP_08137637.1| hypothetical protein HMPREF9141_2847 [Prevotella multiformis DSM
           16608]
 gi|324986650|gb|EGC18648.1| hypothetical protein HMPREF9141_2847 [Prevotella multiformis DSM
           16608]
          Length = 236

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI------EGRNRWPSTE 56
                ++   I+  ++      S  AR  G+ P + N               +    S E
Sbjct: 1   MEKKDRLLRLIEHYSDG---NKSEFARMIGVSPQAVNTWISRNTFDIDIVYAKCVSISPE 57

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKW 115
            +        +   Q   +       T K           P  S       V P     +
Sbjct: 58  WLLTGKGPMLKPTIQEPQVTTQPSTPTAKDRLPEAFRCLDPLHSTQELIPLVTPKVAAGF 117

Query: 116 NTVGVPEIRSPHNGIYAIQT-----QDTRHKTQDTSMLPLYRKGDIL---ILNSAIQVNC 167
            +      +S     Y I        D   +    SM P Y  GDI+   I++++  +  
Sbjct: 118 GSADFVIAKSDVKEYYVIPKWKRQHVDFMIEVTGDSMQPKYNAGDIVGCTIIHNSGFIQW 177

Query: 168 GDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +I  R   ++ K L+      S+  +S N  YP   +   +I  IA ++
Sbjct: 178 NRPHVIATREQGLLIKRLMPGTTTNSLSAVSENTQYPPFDIPKEEITGIALVI 230


>gi|325961650|ref|YP_004239556.1| SOS response UmuD protein [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467737|gb|ADX71422.1| SOS response UmuD protein [Arthrobacter phenanthrenivorans Sphe3]
          Length = 128

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                +    SM       GD LI+N A++   G  ++     G++  K L       + 
Sbjct: 39  STFVVRVTGDSMEGAGISDGDELIVNRALEPKDGSVVIAVLD-GELTVKRL-RLTAAGVV 96

Query: 195 LMSLNCCYPVDTVEM-SDIEW 214
           L + N  YP   V   S++  
Sbjct: 97  LQAENPKYPDIRVPALSELTI 117


>gi|82542851|ref|YP_406799.1| phage repressor [Shigella boydii Sb227]
 gi|81244262|gb|ABB64970.1| putative phage repressor [Shigella boydii Sb227]
          Length = 224

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 13/222 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H        ++ +      S  A     +PT  ++    G            I K
Sbjct: 1   MKTI-HDIRRSNARKLRDGVGGN-SSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEK 58

Query: 61  ILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      +      +         K+I L+        G +          ++ V 
Sbjct: 59  CFDLPIGWLDQEHQTTNITKKPEVSITNKQITLVPVISWVQAGAWKEV------GYSEVD 112

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTG 178
           +      +             +    SM+  YR GD++ ++  +    GD ++     TG
Sbjct: 113 L-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTG 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           +   K LI    +   L +L+  +P   ++++ +   I  ++
Sbjct: 172 ETTFKRLIEDGTQRY-LKALHPNWPEPYIKINGNCSIIGTVI 212


>gi|323669712|emb|CBJ94835.1| UV protection protein [Salmonella bongori]
          Length = 140

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 6/133 (4%)

Query: 88  KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
           + I +   P + +   F                 E    +       +     +    SM
Sbjct: 3   QFIHIASIPEALTIPLFTERCAAGFPSPAADYTEEELDLNAYCIRRPSSTFFVRAIGDSM 62

Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
             +    GD+++++ A +   GD ++     G+   K L  +    I L+ +N  YP   
Sbjct: 63  RDMGLHSGDLMVVDKAEKPLQGDIVI-AETEGEFTVKRLQLKP--RIALLPMNPAYP--V 117

Query: 207 VEMSDIEWIARIL 219
           +   +++    ++
Sbjct: 118 LYPEELQIFGVVI 130


>gi|170755273|ref|YP_001780542.1| putative LexA repressor [Clostridium botulinum B1 str. Okra]
 gi|169120485|gb|ACA44321.1| LexA repressor [Clostridium botulinum B1 str. Okra]
          Length = 531

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 36/162 (22%), Gaps = 4/162 (2%)

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K      +                   E +     +                G    
Sbjct: 363 NMDKFEYVDMKHRRSYEFSRGLGSNEEIIVEDQGSKEEYKEDELTKLPVFNDIAAGEPIL 422

Query: 117 TVGVPEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                E        +          K +  SM+      GD +++         D +   
Sbjct: 423 MNPCVEGEFNIPKYWVRGMKNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AV 481

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              G    K L+ ++  ++ L+  N  Y    +       I 
Sbjct: 482 NLEGSATLKRLLIKKSGAV-LIPENKKYKPIEIREEGASIIG 522


>gi|78212467|ref|YP_381246.1| LexA repressor [Synechococcus sp. CC9605]
 gi|78196926|gb|ABB34691.1| LexA repressor [Synechococcus sp. CC9605]
          Length = 207

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 47/191 (24%), Gaps = 8/191 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKI--LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
                      I      PS   + +   L +      +L  L      T ++ +     
Sbjct: 13  QQELYDWIADYIGTHRHSPSIRQMMQAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQ 72

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LY 151
           L     G+ G    G    G         +       +   +           SM+    
Sbjct: 73  LLGDMVGAAGIPVLGAVAAGGLVTAFDDVQEHLDLAPVLETRG-LFALTVNGDSMVDSHI 131

Query: 152 RKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
             GD++++           G  +           K        ++ L + N  Y    + 
Sbjct: 132 ADGDVVLMEPVQDPQRLRNGTVVSALVAGSGTTLKHFHRHGA-TVVLEAANPAYQPIELA 190

Query: 209 MSDIEWIARIL 219
              ++   R++
Sbjct: 191 AEQVDVQGRLV 201


>gi|303327918|ref|ZP_07358357.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861744|gb|EFL84679.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 247

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 73/236 (30%), Gaps = 27/236 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +KI   +     ++  + + LA+ AG+   + ++        + + P    I  +L    
Sbjct: 11  EKILRVLKEGVTQYG-SATALAKAAGVSNANLSRWIN-----KIQSPRMSEISPLLDVLK 64

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I +       D      K         PP          V   G     +   E++S 
Sbjct: 65  INITKPDAEASRDVCFVNAKVVPAGQYATPPVAEDYIAAPMVGEVGAGPGYLPEDEVKSW 124

Query: 127 HNGIYAIQ-----TQDTRHKT--QDTSMLPLYRKGDILILNSAIQV--NCGDRL-LIKPR 176
                 +            +     TSM P    GDI++++   +     G  + ++ P 
Sbjct: 125 FLAYKNLPAIRHRRNLIAVEIGPTSTSMQPTLNPGDIVLVDRDDRDVTKPGHMMLVLDPD 184

Query: 177 TGDIVAKVL---ISRRGRSIDLMSLN-CCYPVDTVEMS-------DIEWIARILWA 221
            G  + K +     +    +   S N   +P     +        D   + R++WA
Sbjct: 185 DGSGMIKRVSVTERKDDFQVTYYSDNGSKWPPMIYSLKQDFCDDWDKAIVGRVIWA 240


>gi|302879604|ref|YP_003848168.1| Peptidase S24/S26A/S26B, conserved region [Gallionella
           capsiferriformans ES-2]
 gi|302582393|gb|ADL56404.1| Peptidase S24/S26A/S26B, conserved region [Gallionella
           capsiferriformans ES-2]
          Length = 146

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPL-YRKGDILILNSAIQ 164
              P G         E R   +             + +  SM+      GD+L+++ ++ 
Sbjct: 26  HKVPAGFPSPADDYIEGRLSLDQHLIQHKDATFFVRAKGNSMVGAGIFDGDLLVVDRSLN 85

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            + GD ++      ++  K LI R    + L   N  +    ++      +  ++
Sbjct: 86  PSSGDIVIAVLDA-ELTVKRLIRR-DGMVILKPENPDFSEIVLKEGQELQVWGVV 138


>gi|218689126|ref|YP_002397338.1| DNA polymerase V subunit UmuD [Escherichia coli ED1a]
 gi|312966417|ref|ZP_07780639.1| UmuD protein [Escherichia coli 2362-75]
 gi|331646495|ref|ZP_08347598.1| protein UmuD [Escherichia coli M605]
 gi|218426690|emb|CAR07525.1| DNA polymerase V, subunit D [Escherichia coli ED1a]
 gi|281178338|dbj|BAI54668.1| mutagenesis and repair protein UmuD [Escherichia coli SE15]
 gi|312288870|gb|EFR16768.1| UmuD protein [Escherichia coli 2362-75]
 gi|315296574|gb|EFU55869.1| peptidase S24-like domain protein [Escherichia coli MS 16-3]
 gi|330911045|gb|EGH39555.1| error-prone repair protein UmuD [Escherichia coli AA86]
 gi|331045247|gb|EGI17374.1| protein UmuD [Escherichia coli M605]
          Length = 139

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIIIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132


>gi|282898795|ref|ZP_06306782.1| SOS-response transcriptional repressor, LexA [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196322|gb|EFA71232.1| SOS-response transcriptional repressor, LexA [Cylindrospermopsis
           raciborskii CS-505]
          Length = 232

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 5/93 (5%)

Query: 131 YAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLI 186
             I  Q    +    SM   L   GD++ L    +      G  +  +        K   
Sbjct: 127 LPIPPQSYALRVAGDSMIEDLIADGDVVFLRPVAEPNLMKNGTIVAARVEGYGTTLKRFY 186

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G  + L   N  Y    V    +E    ++
Sbjct: 187 -LEGDMVTLKPANSNYQPIQVPAIHVEIQGSLV 218


>gi|33240785|ref|NP_875727.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33238314|gb|AAQ00380.1| SOS-response transcriptional repressor LexA [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 202

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 8/192 (4%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I      PS   +   +   +    Q       +      KE +   L 
Sbjct: 10  QQELFDWLSDYIASHQHSPSIRQMMDGMGLRSPAPIQSRLRHLQEKGWITWKEGQARTLQ 69

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
              +   G    G    G    T    +     + +   +           SM+      
Sbjct: 70  LLDNALSGVPVLGAVAAGGLVETFDDVQETLDMSSVLKTRG-LFALTVNGDSMVDSYIAN 128

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++++    +      G  +           K    + G  + L + N  Y    ++  
Sbjct: 129 GDVVLMEPVQEPSLIRNGTVVSAMVPGSGTTLKHFYRK-GSLVILEAANPAYEPIEIDAE 187

Query: 211 DIEWIARI--LW 220
            ++   ++  +W
Sbjct: 188 MVKIQGKLLAVW 199


>gi|28895791|ref|NP_802141.1| repressor protein [Streptococcus pyogenes SSI-1]
 gi|28811040|dbj|BAC63974.1| putative repressor protein [Streptococcus pyogenes SSI-1]
          Length = 236

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 62/233 (26%), Gaps = 39/233 (16%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
            +NL    LA    +  +SFN+  +         P+  ++ KI          +      
Sbjct: 3   ENNLKQGHLADALEIPRSSFNEYVKGNS-----LPNPGNVQKIADYFGLMKSDIDPRFAP 57

Query: 79  DGRTTEKK-------------------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
             +  E K                    ++  +L F         +         +    
Sbjct: 58  RKKNHELKIPTSPLVKKITTTVVELKVPRKQKVLDFATEQLKEQKNKITSIEKKLYEYKV 117

Query: 120 VPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
             ++ +     Y                 D        SM P Y  G+++++        
Sbjct: 118 YEKLSAGTGYGYFGDGNYDTVFYDEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGFDYE 177

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARIL 219
           G         G    K +   +G  + L+SLN  Y       S+    I  I+
Sbjct: 178 GGI-YAVEWDGQTYIKKVYREKGG-LRLVSLNKKYNDKFAPFSEGPRIIGEIV 228


>gi|148240016|ref|YP_001225403.1| SOS-response transcriptional repressor LexA [Synechococcus sp. WH
           7803]
 gi|147848555|emb|CAK24106.1| SOS-response transcriptional repressor LexA [Synechococcus sp. WH
           7803]
          Length = 207

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 8/176 (4%)

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             PS   + + +   +    Q              +E +   L      + G    G   
Sbjct: 31  HSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQLLGGVASGIPVLGAVA 90

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQV---N 166
            G    T    + R     +   +           SM+      GD++++    +     
Sbjct: 91  AGGLVETFDDVQERLDLAPVLETRG-LFALTVNGDSMVDAHIADGDVVLMEPVTEPSRLR 149

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220
            G  +           K         + L + N  Y    +    ++   ++  +W
Sbjct: 150 EGTIVSALVPGSGTTLKHFHRDGA-VVRLEAANPAYEPIELPADQVQVQGKLAAVW 204


>gi|218961278|ref|YP_001741053.1| Protein umuD [Contains: Protein umuD'] [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729935|emb|CAO80847.1| Protein umuD [Contains: Protein umuD'] [Candidatus Cloacamonas
           acidaminovorans]
          Length = 147

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%)

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
                 S   P G         E     +  +          +    SM        DIL
Sbjct: 21  QYRPLMSSKIPAGFPSPAQDYIEGKLDLNEYLIVHPASTFFVRVDGYSMQGAGIMPDDIL 80

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           I++ A++      ++     G++  K L   +G+   L+  N  +    ++      I  
Sbjct: 81  IVDRALEATNNRIVIAIVD-GELTVKRL-KIKGKKYYLVPENDEFEPILIQEGMDFIIWG 138

Query: 218 IL 219
           ++
Sbjct: 139 VV 140


>gi|9187582|emb|CAB96972.1| hypothetical protein [Pseudomonas syringae pv. pisi]
          Length = 144

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165
             P G     V   E     + +  ++       K    SM+       D+++++ +   
Sbjct: 22  QVPAGFASPAVDYIEKHVSLDEMAEVRAPHVYLAKILGDSMIGAGIFDRDLIVVDRSRNA 81

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             G+ ++      + + K L       + L S N  YP   +   D   I  ++  S
Sbjct: 82  EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENTAYPARHILEGDNLVIWGVVNYS 137


>gi|296107978|ref|YP_003619679.1| hypothetical protein lpa_03412 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649880|gb|ADG25727.1| hypothetical protein lpa_03412 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 231

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 75/217 (34%), Gaps = 16/217 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++ +   +  + + +N++ S LAR  GL   + ++       G    P   ++  I A  
Sbjct: 19  NENLSNNLSLLMKENNVSESDLARALGLPYNTIHRL----ASGHTTDPRISTLKSIAAYF 74

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           N ++  LL+   S     +       +                    N  N + +P +  
Sbjct: 75  NVSLDTLLNPIESVTNPLKTNSNPKAVPIISWEQISNNEFLSSIDHQNWVNWLPIPLVSI 134

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKV 184
            +     +       +++  SM P +  G   +++   +   GD  L+   + G +  + 
Sbjct: 135 DN-----LSLNAYALESR-PSMYPRFPTGTFFVIDPECKPIDGDLILIKIKKDGAVSLRE 188

Query: 185 LISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARIL 219
           L+      + L+ +  N          S+ E I  ++
Sbjct: 189 LMIDPP-IMKLLPIIQNSD--SLNFVESEHEIIGVVI 222


>gi|255021590|ref|ZP_05293633.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968978|gb|EET26497.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus
           ATCC 51756]
          Length = 202

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 5/185 (2%)

Query: 29  RKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATNETICQLLDLPFSDGRTTEKKE 87
            K         +     ++  +  P   E +      +       L      G    ++ 
Sbjct: 2   EKLSRRQAEILQWLHRYVQEHDAPPTRVELMQAFAFQSPNAAESHLRTLERKGYLQLQRG 61

Query: 88  KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
           +   +         G    G    G    +    E   P          D   + Q  SM
Sbjct: 62  RARGIRLTEALPQDGLPLVGRVAAGQPILSEAHLEAYLPAADRLF-PEADFLLRVQGMSM 120

Query: 148 LPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
                  GD+L +    +V+ G   +++    ++  K      G  + L+  N  +    
Sbjct: 121 RDAGILDGDLLAVQRCAEVHNGQIAVVR-LEDEVTVKRWQR-EGERLWLLPENPDFAPIQ 178

Query: 207 VEMSD 211
           V++  
Sbjct: 179 VDLGR 183


>gi|66045998|ref|YP_235839.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256705|gb|AAY37801.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
          Length = 143

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILN 160
            + S +   G         E     + +++I+            SM       GD+ I++
Sbjct: 17  PWFSSLVSAGFPSPAADHIEKHISLDELFSIRAPHVYLVTVLGESMQGAGIHSGDLAIVD 76

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
            +++   GD ++      + V K L   R   + L S N  +    + E  ++  +  +
Sbjct: 77  RSLEAEHGDIVVAALNA-EAVCKRLH-MRNDVVILQSENPHFAPRHIMEGDELSILGVV 133


>gi|213972206|ref|ZP_03400288.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1]
 gi|302063813|ref|ZP_07255354.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato K40]
 gi|302133150|ref|ZP_07259140.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213923035|gb|EEB56648.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1]
          Length = 144

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165
             P G     V   E     + +  ++       K    SM+       D+++++ +   
Sbjct: 22  QVPAGFASPAVDYIEKHVSLDEMAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRNA 81

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             G+ ++      + + K L       + L S N  YP   +   D   I  ++  S
Sbjct: 82  EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENSAYPAKHILEGDNLVIWGVVNYS 137


>gi|313205405|ref|YP_004044062.1| sos response umud protein [Paludibacter propionicigenes WB4]
 gi|312444721|gb|ADQ81077.1| SOS response UmuD protein [Paludibacter propionicigenes WB4]
          Length = 153

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
            F  G    G      + + +      +  +    T     K + TSM       GDIL+
Sbjct: 27  PFVDGGIAAGFPSPAQDYIDL--KIDLNTELINNPTSTFYAKVKGTSMQDAGIMDGDILV 84

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           ++ ++    GD  +     G+   K +       I L+  N  +    V   +   I  I
Sbjct: 85  VDKSLDPKDGDTAVCFID-GEFTLKYIKFETD-VIYLVPANPKFEPIKVTEENNFCIWGI 142

Query: 219 LWAS 222
           +  S
Sbjct: 143 VTYS 146


>gi|330954045|gb|EGH54305.1| peptidase S24, S26A and S26B [Pseudomonas syringae Cit 7]
          Length = 143

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILN 160
            + S +   G         E     + +++I+            SM       GD+ I++
Sbjct: 17  PWFSSLVSAGFPSPAADHIEKHISLDELFSIRAPHVYLVTVLGESMQGAGIHSGDLAIVD 76

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
            +++   GD ++      + V K L   R + + L S N  +    + E  ++  +  +
Sbjct: 77  RSLEAEHGDIVVAALNA-EAVCKRLH-MRNKVVILQSENPHFAPRHIMEGDELSILGVV 133


>gi|312971283|ref|ZP_07785461.1| peptidase S24-like family protein [Escherichia coli 1827-70]
 gi|310336485|gb|EFQ01671.1| peptidase S24-like family protein [Escherichia coli 1827-70]
          Length = 173

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 14/127 (11%)

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDI 156
                 G         E+       +                    +  SM      GD+
Sbjct: 37  DIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDL 96

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---I 212
           L ++  ++   GD +           K L   +   + ++S N  Y     +E  +   +
Sbjct: 97  LFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRV 155

Query: 213 EWIARIL 219
               +++
Sbjct: 156 FIFGKVI 162


>gi|77414342|ref|ZP_00790499.1| putative prophage LambdaSa1, repressor protein [Streptococcus
           agalactiae 515]
 gi|77159634|gb|EAO70788.1| putative prophage LambdaSa1, repressor protein [Streptococcus
           agalactiae 515]
          Length = 259

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 64/258 (24%), Gaps = 48/258 (18%)

Query: 2   TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
               +K+I+   +    ER  +  + L    GL  T+     +       R    E + +
Sbjct: 4   KKLENKEIFSKNLAFYMERKRVDRNTLCADLGLKYTTVRDWLKGIT--YPRIGKIELLAE 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG------------------- 101
             +     + +      +  +      + I L  +    +                    
Sbjct: 62  YFSINKSDLIEEHSTNGATSKVNFDPRQAILLSNYSKLNNVRKNKLLAISETLLSEEQGK 121

Query: 102 -----------------GFFDSGVFPTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
                                 G    G   W           +      +         
Sbjct: 122 VINLQEKMAEYGSRKRVSLSVPGKVSAGTGYWQEDDYDTEVDFYADEIPDEKNYDTVAVV 181

Query: 144 -DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P  + GD L +  A QV+     +     G+   K L +       L SLN  Y
Sbjct: 182 VGHSMEPKIKNGDFLFIKLADQVDINKIGI-FQVNGENYVKKLKND-----YLQSLNPKY 235

Query: 203 PVDT-VEMSDIEWIARIL 219
              T  E  D   I  ++
Sbjct: 236 ADITPAEGDDFRTIGEVV 253


>gi|94970418|ref|YP_592466.1| putative prophage repressor [Candidatus Koribacter versatilis
           Ellin345]
 gi|94552468|gb|ABF42392.1| putative prophage repressor [Candidatus Koribacter versatilis
           Ellin345]
          Length = 247

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 67/244 (27%), Gaps = 47/244 (19%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------------------- 55
           R+     +  S  A   G+   S ++ ++ G     R PS                    
Sbjct: 10  RLRAYLKMNQSQFADALGVTQASVSRWEQKGAS--TRGPSRGAWTSMYFLGFDTPLANEL 67

Query: 56  --------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                   E++ ++     + +         +      +   IPLL    +         
Sbjct: 68  YERAGLDPEAVKRLARDFRDDLSGRETTYVRENGDGPVEGVAIPLLTDKAAAG----QPR 123

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
           +    +    +  P    PH       T     + +  SM P+   G I+ ++++ +   
Sbjct: 124 LINEKDIQKYLLFPREMVPH------PTSTRCMRVRGDSMAPIVDDGYIVAVDTSERDPR 177

Query: 168 ---GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN--CCYPVDTVEMSD--IEWIARI-L 219
                 + +         K L         L+  +    +    ++  +     I R+  
Sbjct: 178 KLVESMVAVSDPESGCTIKWLRQAGRARFLLVPQHTSPRHNPIVLDPKEEGWRIIGRVLF 237

Query: 220 WASQ 223
           W  Q
Sbjct: 238 WIGQ 241


>gi|327254894|gb|EGE66510.1| peptidase S24-like family protein [Escherichia coli STEC_7v]
          Length = 156

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 14/127 (11%)

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RHKTQDTSMLPLYRKGDI 156
                 G         E+       +                    +  SM      GD+
Sbjct: 20  DIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDL 79

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSD---I 212
           L ++  ++   GD +           K L   +   + ++S N  Y     +E  +   +
Sbjct: 80  LFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKD-KLLVISDNKSYSPWDPIEKDEMNRV 138

Query: 213 EWIARIL 219
               +++
Sbjct: 139 FIFGKVI 145


>gi|319743917|gb|EFV96303.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 101

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 13/105 (12%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
            T+ +P               D        SM P Y  GD + +  ++++  GD  +   
Sbjct: 3   ETIELPVDYDA----------DFVIPVYGDSMEPDYHSGDYVFVKLSVELVDGDIGV-FE 51

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
             GD   K L+     +  L SLN  Y    ++   D   I  ++
Sbjct: 52  YYGDAYIKQLLINNEGAF-LHSLNDKYSDIQIDRDSDFRIIGEVM 95


>gi|322835568|ref|YP_004215594.1| peptidase S24/S26A/S26B [Rahnella sp. Y9602]
 gi|321170769|gb|ADW76467.1| Peptidase S24/S26A/S26B, conserved region [Rahnella sp. Y9602]
          Length = 139

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM       GD+L+++ ++    GD ++  
Sbjct: 32  DYVE--DRLDLNKLLIRHPSATYFIKVSGESMHGAGISDGDLLVVDRSLSAVHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEWIARIL 219
             +G+   K L +     + L+  N  Y   + +   ++E    ++
Sbjct: 90  -VSGEFTVKELRTHP--YLQLVPHNDDYSSISFQNAEELEIFGVVI 132


>gi|294665736|ref|ZP_06731010.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604520|gb|EFF47897.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 210

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 31/218 (14%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           +T + LA KAG+   +  + +   +        + SI +I  A   +   L         
Sbjct: 1   MTQTALAAKAGISQQAIARLESGQVA------KSGSIIEIANALGVSAAWLALGEGPMEA 54

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ----- 136
                EK                 S     GN    V   E  S      +++ +     
Sbjct: 55  GLSAIEKPE-----AHDYVDVIGYSQAAGLGNGAEAVEYAETHSLKFKKTSLRRRGIFGK 109

Query: 137 -DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG----DIVAKVLISRRGR 191
               +  +  SM P    GD ++ +++        L +    G    +   K   +    
Sbjct: 110 PLAVYYGKGDSMEPTIEDGDAILFDTSDTRVIDGVLYVIQVDGMAYPEYYVKR--ALVAD 167

Query: 192 SIDL-MSLNCC-----YPVDTVE--MSDIEWIARILWA 221
            I L  S N            ++     I  I R+ W 
Sbjct: 168 GITLFQSDNPAGDHNWKRPRRMDSKREPITVIGRVHWI 205


>gi|238762774|ref|ZP_04623743.1| Protein umuD' [Yersinia kristensenii ATCC 33638]
 gi|238699079|gb|EEP91827.1| Protein umuD' [Yersinia kristensenii ATCC 33638]
          Length = 148

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 9/131 (6%)

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
            L                FP+    + V  P     +    A        +    SM   
Sbjct: 11  QLREIVLIPLFNETIPAGFPSPAA-DYVERP--LDLNELCIAHPAATYFVRVSGNSMTGA 67

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
               G +L+++ ++    GD ++     G+   K L       + L ++N  Y    +  
Sbjct: 68  GIYDGSLLVVDRSVTAQHGDIIIAA-VGGEFTVKKLCLHP--VVQLEAMNPDYAPIVLSD 124

Query: 210 --SDIEWIARI 218
              D+E    +
Sbjct: 125 GGDDLETFGVV 135


>gi|333030045|ref|ZP_08458106.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides coprosuis
           DSM 18011]
 gi|32451210|emb|CAD55716.1| putative UV repair protein [Bacteroides coprosuis]
 gi|332740642|gb|EGJ71124.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides coprosuis
           DSM 18011]
          Length = 146

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +      +  +          + +  SM+      GDIL+++ +++   GD  +     
Sbjct: 37  YMESAIDLNKELIKHPASTFYGRVKGDSMIDANVHDGDILVIDKSLEPQNGDMAVCFID- 95

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+   K  I      I L   N  Y    V + +   I  I+
Sbjct: 96  GEFTIK-YIRLEKDVIWLEPANENYEPIKVTIENDFLIWGIV 136


>gi|2914397|pdb|1AY9|A Chain A, Wild-Type Umud' From E. Coli
 gi|2914398|pdb|1AY9|B Chain B, Wild-Type Umud' From E. Coli
          Length = 108

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 1   DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 58

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 59  VD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 101


>gi|254238745|ref|ZP_04932068.1| ultraviolet light resistance protein A [Pseudomonas aeruginosa
           C3719]
 gi|126170676|gb|EAZ56187.1| ultraviolet light resistance protein A [Pseudomonas aeruginosa
           C3719]
          Length = 143

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +           I A        +    SM+      GD+++++ + +   GD ++  
Sbjct: 33  DHLEREISLDEILQIRA--PHTYLVRAGGDSMIRAGIHDGDLMVVDRSREAEPGDIVIAA 90

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
              G+   K L     + + L + N  Y    +   D   +  ++  S
Sbjct: 91  VN-GEPTVKRLAKDGNQ-VVLRAENPRYAPRYILEGDELLVWGVVRYS 136


>gi|19746277|ref|NP_607413.1| repressor protein [Streptococcus pyogenes MGAS8232]
 gi|19748465|gb|AAL97912.1| repressor protein [Streptococcus pyogenes MGAS8232]
          Length = 274

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 63/272 (23%), Gaps = 65/272 (23%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-------------------------- 41
           K+ E I    E   L+    A K+GL     +                            
Sbjct: 2   KLGEIIKNFREEKKLSMDRFAEKSGLTKGYISMLEKNEHPKSKKPIIPTEETLLKVAKGM 61

Query: 42  -----------------------KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
                                  K          P+T  +  I +   +       L  S
Sbjct: 62  GVDIDFVLSKLDSDQEIQINISPKNMLNMDNPSTPTTPKVELIPSTLQKINSTSSQLEHS 121

Query: 79  DGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                    +                       +       G       V   +      
Sbjct: 122 RQIIVLDTAETLLEQQKEIKNNEDTIAELFSYNYYDHAASAGTGQYLNDVQVEKIELPVD 181

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           Y     D        SM P Y  GD + +  ++++  GD  +     GD   K L+    
Sbjct: 182 Y---DADFVIPVYGDSMEPKYHSGDYVFVKLSVELTDGDIGV-FEYYGDAYIKQLLINAE 237

Query: 191 RSIDLMSLNC--CYPVDTVEMS-DIEWIARIL 219
            +  L SLN    YP   ++   D   I  ++
Sbjct: 238 GAF-LHSLNQCGDYPDIPIDRDSDFRIIGEVM 268


>gi|330503085|ref|YP_004379954.1| protein MucA [Pseudomonas mendocina NK-01]
 gi|328917371|gb|AEB58202.1| protein MucA [Pseudomonas mendocina NK-01]
          Length = 143

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172
             + V      S  +            + +  SM       GDI++++ ++    G  ++
Sbjct: 31  AEDHVD--ANLSLDDLCVQHPAATFFLRVRGDSMRDLGIFDGDIVVVDRSLTPRVGMVVV 88

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
                G    K L S+ GR + L + N  YP   + E  ++E    +
Sbjct: 89  ALVN-GAFTCKQLGSQDGRPV-LHAANPAYPDIHLGEGEELEIFGVV 133


>gi|52424799|ref|YP_087936.1| LexA repressor [Mannheimia succiniciproducens MBEL55E]
 gi|52306851|gb|AAU37351.1| LexA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 225

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 31/210 (14%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62
            ++++  +    E   + P  + ++R+ G                  R P+  E   K L
Sbjct: 23  QQEVFNFLKHHIETTGMPPTRAEISRELGF-----------------RSPNAAEEYLKAL 65

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A           +      T+      +           G    G    G         E
Sbjct: 66  ARKG--------VVEILSGTSRGIRLLVDTEESANDEDAGLPLIGRVAAGEPILAEQHIE 117

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +        D   K    SM  +    GD+L ++S   V  G  ++ +    ++ 
Sbjct: 118 GTYKVDADMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQVIVARI-EDEVT 176

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L  + G  + L + N  +    V + +
Sbjct: 177 VKRLERK-GDVVYLHAENEEFKPIVVNLKE 205


>gi|213971544|ref|ZP_03399655.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1]
 gi|301386149|ref|ZP_07234567.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060711|ref|ZP_07252252.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato K40]
 gi|213923736|gb|EEB57320.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. tomato T1]
          Length = 143

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL-YRKGDILILN 160
            + S +   G         E     + +++I+            SM       GD+ I++
Sbjct: 17  PWFSSLVSAGFPSPAADHIEKHISLDELFSIRAPHVYLVTVLGESMQGAGIHSGDLAIVD 76

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
            +++   GD ++      + V K L   R   + L S N  +    + E  ++  +  +
Sbjct: 77  RSLEAEHGDIVVAALNA-EAVCKRLH-MRNEVLILQSENPHFAPRHIMEGDELSILGVV 133


>gi|330968287|gb|EGH68547.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 135

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165
             P G     V   E     + +  ++       K    SM+       D+++++ +   
Sbjct: 22  QVPAGFASPAVDYIEKHVSLDEMAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRNA 81

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+ ++      + + K L       + L S N  YP   +   D   I  ++
Sbjct: 82  EHGEIVVAALNNSEPICKRLF-MMDGVVKLQSENSAYPAKHILEGDNLVIWGVV 134


>gi|224367507|ref|YP_002601670.1| UmuD1 [Desulfobacterium autotrophicum HRM2]
 gi|223690223|gb|ACN13506.1| UmuD1 [Desulfobacterium autotrophicum HRM2]
          Length = 139

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 6/125 (4%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
                        FP+    + +        +  +          +    SM+      G
Sbjct: 13  ISCPICISSVEAGFPSPA-EDYME--GSLDLNRHLIKHPAATFFVRVSGDSMINAGIHPG 69

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           DILI++ +++      ++     G++  K L  R    I L   N  Y   ++       
Sbjct: 70  DILIVDRSLEATDKKIVIAVID-GELTVKRLRYRNA-LISLEPENEDYHPISITQEKSME 127

Query: 215 IARIL 219
           I  ++
Sbjct: 128 IWGVV 132


>gi|73748675|ref|YP_307914.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1]
 gi|147669434|ref|YP_001214252.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|289432701|ref|YP_003462574.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73660391|emb|CAI82998.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1]
 gi|146270382|gb|ABQ17374.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
 gi|288946421|gb|ADC74118.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 214

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 10/212 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I    +    TP  L  ++GL      K ++   +      +  +  K+  A    
Sbjct: 4   IGEKIREFRKARGWTPEYLGTRSGLSGQYIRKLEKGERQ----SITLATANKLSNAFGIE 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             +L+    +      +         F    +      G  P    +N +       P +
Sbjct: 60  PAKLISENDNSSPRQIEDILAEVRSIFKRLETVEVCVHGCMPERKTYNELAYKSFLIPRS 119

Query: 129 GIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
            I          + +D  +       G+++++ +   +  G+ L        +    L S
Sbjct: 120 -IVENLKNIYALQVEDNHLEHFGIYPGEMVVIQAEHTIEDGN-LYACQIDQGVYGYNLYS 177

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  + + N       + +S+I+ + RIL
Sbjct: 178 TENG-FRISNGNGTSHD--LPLSEIKVLGRIL 206


>gi|168178306|ref|ZP_02612970.1| LexA repressor [Clostridium botulinum NCTC 2916]
 gi|182671611|gb|EDT83585.1| LexA repressor [Clostridium botulinum NCTC 2916]
          Length = 531

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM+      GD +++         D +      G+   K L+ ++  ++
Sbjct: 442 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGNATLKRLLIKKSGAV 500

Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
            LM  N  Y    +       I 
Sbjct: 501 -LMPENKKYKPIEIREEGANIIG 522


>gi|71559074|ref|YP_271801.1| SamA [Salmonella enterica]
 gi|68166373|gb|AAY88134.1| SamA [Salmonella enterica]
          Length = 140

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 9/124 (7%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
             +          FP+          E    +             +    SM  +    G
Sbjct: 14  STAPLFTERCPAGFPSPAAD---YTEEKLDLNAYCIRRPAATFFVRAIGDSMKEMGLHSG 70

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           D+++++ A +   GD ++ +   G+   K L  +    I L+ +N  YP       +++ 
Sbjct: 71  DLMVVDKAEKPMQGDIVIAETD-GEFTVKRLQLKP--RIALLPINPAYPTLY--PEELQI 125

Query: 215 IARI 218
              +
Sbjct: 126 FGVV 129


>gi|293604579|ref|ZP_06686982.1| phage repressor [Achromobacter piechaudii ATCC 43553]
 gi|292816995|gb|EFF76073.1| phage repressor [Achromobacter piechaudii ATCC 43553]
          Length = 366

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 12/183 (6%)

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R P   + ++    T +          +            P        +          
Sbjct: 169 RIPGLPAPWEGGRTTYQADRDTKLRVATRDSVVANAGPGAPHAENDEFEAVPELADVRLA 228

Query: 111 TGNKWNTVG------VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
            G+            V   RS    + A   +      +  SM P+ + G  L++     
Sbjct: 229 AGDGIENHDETQTGVVQFRRSFLRDVGADSRKSLVVYAKGDSMEPVIKDGAALLVVPNED 288

Query: 165 VN----CGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
           +      G  +      G ++ K +   +        S N  YP   +E       + ++
Sbjct: 289 LTLRDLAGGGVYAINYDGKMIVKTVAKDKLTGRWVARSFNPAYPDIPLENGHPARVLGQV 348

Query: 219 LWA 221
           +WA
Sbjct: 349 VWA 351


>gi|34541026|ref|NP_905505.1| umuD protein [Porphyromonas gingivalis W83]
 gi|34397341|gb|AAQ66404.1| umuD protein [Porphyromonas gingivalis W83]
          Length = 141

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              ++ +          + +  SM       GDIL+++ +++   GD  +     G+   
Sbjct: 38  IDLNHELITHPYSTFYGRVKGNSMEDAHVFDGDILVIDKSLEARDGDMAVCFLD-GEFTL 96

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +   +   I L   N  YP   V   +   I  I+
Sbjct: 97  KTI-RIKSEEILLEPANPDYPTIHVSADNDFVIWGIV 132


>gi|304397691|ref|ZP_07379568.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB]
 gi|304354863|gb|EFM19233.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB]
          Length = 139

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            +     +    SM       GD+L+++S++  + GD ++     G+   K L       
Sbjct: 48  PSATYFVRVSGESMIEAGINDGDMLVVDSSLTASHGDIVVAAVD-GEFTVKRLQLHP--C 104

Query: 193 IDLMSLNCCYPVDTVEMSD-IEWIARI 218
           + LM +N  +    ++  D +E    +
Sbjct: 105 LQLMPMNTKFKPIAIQTEDALEVFGVV 131


>gi|163754986|ref|ZP_02162107.1| putative UmuD/RumA DNA repair protein [Kordia algicida OT-1]
 gi|161325053|gb|EDP96381.1| putative UmuD/RumA DNA repair protein [Kordia algicida OT-1]
          Length = 147

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 4/119 (3%)

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPL-YRKGDILILN 160
            F +     G           R   +             +    SM+       D+L+++
Sbjct: 24  EFVASGISAGFPSPADDFRNDRINLSDELINDPNTTYYARVNGESMIDAGLDHDDLLVID 83

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +I    G   +     G+   K L       + LM  N  Y    V       I  I+
Sbjct: 84  KSITPKDGKIAVCCVD-GEFTVKRL-KITDECVYLMPANDNYKPIKVTKDKQLLIWGIV 140


>gi|301166914|emb|CBW26493.1| DNA damage-inducible lexA repressor (SOS regulatory protein)
           [Bacteriovorax marinus SJ]
          Length = 207

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 56/211 (26%), Gaps = 30/211 (14%)

Query: 5   SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             K++ + I    ++H +  T   +    GL                    S  S+ + L
Sbjct: 6   KQKEVLDFITSYWDKHEVAPTQKEIKEAFGLK-------------------SFGSVQRYL 46

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               +      +     G   ++ + +            G         G     +  P+
Sbjct: 47  KYLKDAGHIDSNWNARRGLRPKETKAQSVDENTIEIPLLGD-----VAAGIPIEAIENPD 101

Query: 123 IRSPHNGIYAIQ-TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                         +      +  SM       GDI++       + G  ++     G+ 
Sbjct: 102 NTIAIPTHMIRDSKRYYALNVKGDSMIEDGILDGDIIVCRHQQTASKGQTIIAIVD-GEA 160

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             K     +  +I+L+  N       V+ + 
Sbjct: 161 TVKRYSPLKN-TIELIPANSTMKPIQVDPTQ 190


>gi|226948181|ref|YP_002803272.1| putative LexA repressor [Clostridium botulinum A2 str. Kyoto]
 gi|226843339|gb|ACO86005.1| putative LexA repressor [Clostridium botulinum A2 str. Kyoto]
          Length = 531

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM+      GD +++         D +      G+   K L+ ++  ++
Sbjct: 442 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGNATLKRLLIKKSGAV 500

Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
            LM  N  Y    +       I 
Sbjct: 501 -LMPENKKYKPIEIREEGANIIG 522


>gi|255067381|ref|ZP_05319236.1| component of DNA polymerase V [Neisseria sicca ATCC 29256]
 gi|255048351|gb|EET43815.1| component of DNA polymerase V [Neisseria sicca ATCC 29256]
          Length = 204

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 6/115 (5%)

Query: 109 FPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
            P G               +  + A  +     ++   SML     K DI+I++ +    
Sbjct: 80  IPAGFPSPAEPYIADYLDFNEYLIATPSATFAARSGGYSMLDAGISKDDIMIIDRSKTPK 139

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMSDI-EWIARI 218
            GD + +     +   K L    GR  +L S N    YP    + SD    I  +
Sbjct: 140 HGDIV-MADLGNEFTIKRLYKVPGRKPELHSENASGEYPDFVPDESDTWTIIGVV 193


>gi|254518539|ref|ZP_05130595.1| LexA repressor [Clostridium sp. 7_2_43FAA]
 gi|226912288|gb|EEH97489.1| LexA repressor [Clostridium sp. 7_2_43FAA]
          Length = 475

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 4/138 (2%)

Query: 81  RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP-HNGIYAIQTQDTR 139
            +  K+  E   + +  +             G         E                  
Sbjct: 329 ASNRKEVFEGNDICYNENELEDIPMFNNIAAGTPIEMNDNIEGSFCIPKYWLERGKDTFI 388

Query: 140 HKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
            + +  SM       GD++++      N  + +      G+   K L    G    LM  
Sbjct: 389 LRVKGDSMVEKEICDGDLVVIKKQGTANHNEIVAASLD-GEATLKTLN-LNGNLPKLMPA 446

Query: 199 NCCYPVDTVEMSDIEWIA 216
           N  Y   ++E  ++  + 
Sbjct: 447 NSLYAPISLENKEVNILG 464


>gi|146299727|ref|YP_001194318.1| putative prophage repressor [Flavobacterium johnsoniae UW101]
 gi|146154145|gb|ABQ04999.1| putative prophage repressor; UmuD; peptidase family S24
           [Flavobacterium johnsoniae UW101]
          Length = 149

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 4/130 (3%)

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT-QDTRHKTQDTSMLPL 150
            +    +     F       G         E+    N             + +  SM   
Sbjct: 15  YIPDTSTEVKVPFFDVGISAGFPSPADDFIELSIDLNKELIKHKYTTYFARVKGYSMKNA 74

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
               GD+LI++ +++       + +   G+   K +       I L++ N  Y    V  
Sbjct: 75  GIHDGDLLIIDKSLEPQNNKIAVCQID-GEFTVKRI-KIEKDIIWLIAENEDYKPIKVTP 132

Query: 210 SDIEWIARIL 219
            +   I  I+
Sbjct: 133 ENNFVIWGIV 142


>gi|330952468|gb|EGH52728.1| peptidase S24, S26A and S26B [Pseudomonas syringae Cit 7]
          Length = 144

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 3/119 (2%)

Query: 103 FFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILN 160
              S   P G     V   E     + +  ++       K    SM+       D+++++
Sbjct: 17  PLYSFQVPAGFASPAVDYIEKHVSLDEMAEVRAPHVYLAKILGDSMVGAGIYDKDLIVVD 76

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +     G+ ++      D + K L       + L S N  YP   +   D   I  I+
Sbjct: 77  RSRNAEHGEVVVAALNNSDPICKRLY-MMNGVVKLQSENSAYPTRHILEGDNLVIWGIV 134


>gi|254497205|ref|ZP_05110016.1| putative repressor protein C2 [Legionella drancourtii LLAP12]
 gi|254353588|gb|EET12312.1| putative repressor protein C2 [Legionella drancourtii LLAP12]
          Length = 207

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 15/199 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   + ++ ++  ++ + L+++ G+     N+      +     P   +I  I    N  
Sbjct: 4   IGINLKKLLKKECISENELSKRIGIPQQMINRIITGINQ----NPKLSTITPIANYFNVP 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+     D   T      I + Y           +       K+ T  + +      
Sbjct: 60  LQELISNSDFDTGNTPIANTLIKIPYVEFKDIEEHDINHAISHSKKFITADLDQN----- 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                          D SM P + KG IL+         GD  L+K      V + ++  
Sbjct: 115 ------KDYFATTMNDYSMEPKFSKGTILVFEKEKVPFNGDFCLLKDDENHYVFRQIMIN 168

Query: 189 RGRSIDLMSLNCCYPVDTV 207
                 +  LN      T+
Sbjct: 169 STNKKFIKCLNPTSEAFTI 187


>gi|87124247|ref|ZP_01080096.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9917]
 gi|86167819|gb|EAQ69077.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9917]
          Length = 147

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V V      +  +          +    SML      GD+L+++ +++   G  ++
Sbjct: 38  ADDYVEV--GIDLNEQLIRHPLSTFFLRVSGESMLGAGIHDGDLLVVDRSLEPRPGRVVV 95

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G    K L   RG+ + L + +  YP   +    D++ 
Sbjct: 96  AVLD-GAFTLKRLARHRGQ-LRLEAAHPDYPPLELHRCGDVQI 136


>gi|28870585|ref|NP_793204.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853833|gb|AAO56899.1| repressor protein c2 [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 243

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 13/202 (6%)

Query: 29  RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88
           +  G+  T+   SK    E      S E++   L    E +   +    +D        K
Sbjct: 38  KVMGVFKTTQAISKWLNAEAIAEADSMEALCSWLGIRREWLEYGVGPKTNDIHVYSSDPK 97

Query: 89  EIPLLYFPPSGSGG--FFDSGVFPTGNKWNT---VGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            I      P  +             G    T   V      S  +    I +     K +
Sbjct: 98  NISGSNIVPLPNTSGKVPLISWVQAGAWCETYSNVESESAESWLSCPVPISSSGYALKVR 157

Query: 144 DTSMLP-----LYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMS 197
             SM        Y  G I+ ++  ++V+ GDR++ +     +   KV +   G+   L  
Sbjct: 158 GDSMTNPGLGRSYPAGCIIFVDPEVEVHTGDRVIARLDRTNEATFKVFVEDAGQQF-LKP 216

Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
           +N  YP+  +   +     +++
Sbjct: 217 INPQYPIIKIT-EETHICGKVI 237


>gi|221205602|ref|ZP_03578617.1| prophage transcriptional regulator [Burkholderia multivorans CGD2]
 gi|221174440|gb|EEE06872.1| prophage transcriptional regulator [Burkholderia multivorans CGD2]
          Length = 144

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               +               SM P    GD L++N         ++ +     ++  K L
Sbjct: 40  WLERLGMKPEYAATIVADGMSMAPRIEDGDSLVVNYKEHTIASGKVYVFTFAYELFIKRL 99

Query: 186 ISRRGRSIDLMSLNCC---YPVDTVEMS---DIEWIARILWAS 222
                 ++ ++S N     YP   +      D+  IAR++  S
Sbjct: 100 YRGTD-AVRVVSDNPDKSRYPDWQIPAERLNDLTVIARVVAVS 141


>gi|254432149|ref|ZP_05045852.1| LexA repressor [Cyanobium sp. PCC 7001]
 gi|197626602|gb|EDY39161.1| LexA repressor [Cyanobium sp. PCC 7001]
          Length = 210

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 45/189 (23%), Gaps = 6/189 (3%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I      PS   + + +   +    Q              +E +   L 
Sbjct: 18  QQELYDWLVDYIGQHRHSPSIRQMMQAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQ 77

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
              + S G    G    G    T    + R     +   +           SM+      
Sbjct: 78  LLGAASSGIPVLGSVAAGGLVETFDDVQERLDLAPLLETRG-LFGLTVNGDSMVDAHIAD 136

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD+++L           G  +           K        ++ L + N  Y    +   
Sbjct: 137 GDVVLLEPVTDPARLRAGTIVSALVPGSGTTLKHFHRNGA-TVTLEAANPAYEPIVLPAE 195

Query: 211 DIEWIARIL 219
            +    +++
Sbjct: 196 QVTVQGKLV 204


>gi|46579096|ref|YP_009904.1| DNA-binding protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448509|gb|AAS95163.1| DNA-binding protein, putative [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 262

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 65/231 (28%), Gaps = 15/231 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--------E 56
           +  +++E I         T   LA    +  +S + +KR      + +           +
Sbjct: 33  TFDEVFERIKLATNTR--TQVELAEVLDIRQSSISDAKRRNSVPSDWYMKLFEKFGLNPD 90

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K          Q  +   +       ++          S     F  G     N  +
Sbjct: 91  WLKKGSGPMYLRTDQGYEPLDAPVAGLVLEDPARYGDPDAKSSVATVFAMGCAVDENGVS 150

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKP 175
                  +      +A        +    +M P+  KG  + +++  + +  G+   +  
Sbjct: 151 QPLTAIAKLAVPQSFAAPGTQ-IVRVDAGAMEPVIGKGAFVGIDTTQKNIVSGELYGVFM 209

Query: 176 RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
               +  K +          L + N  +P   + +         RI+W  Q
Sbjct: 210 PFEGVAIKRVFLDAANARFILRTENPTHPEQYLPIDQHADRIFGRIVWVLQ 260


>gi|323965383|gb|EGB60839.1| peptidase S24 [Escherichia coli M863]
          Length = 185

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 11/165 (6%)

Query: 58  IFKILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           I K           +      +         K+I L+        G +    +   +   
Sbjct: 17  IEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEVGYSEVDLST 76

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KP 175
           T   P                   +    SM+  YR GD++ ++  +    GD ++    
Sbjct: 77  TETYP-------CPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMH 129

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            TG+   K LI    +   L +LN  +P   ++++ +   I  ++
Sbjct: 130 DTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 173


>gi|253998876|ref|YP_003050939.1| peptidase S24 and S26 domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253985555|gb|ACT50412.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4]
          Length = 145

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 9/130 (6%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
                        P     +    P           +  +          +    SM  +
Sbjct: 10  QGLFHIPLPFYDIPVSAGQSRFPSPAQDYEIAEIDLNKQLITNPPATFLTRVTGDSMTGV 69

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
               G IL++N A++      +++    G+++ K L       + L+S N  Y   T+  
Sbjct: 70  GIYPGSILVVNRALKPRSSSIVVVLLD-GELMVKRLYKH-AGMVKLLSENPTYAPITLTE 127

Query: 210 SDIEWIARIL 219
                I  ++
Sbjct: 128 GQELMIWGVV 137


>gi|311279193|ref|YP_003941424.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae
           SCF1]
 gi|308748388|gb|ADO48140.1| Peptidase S24/S26A/S26B, conserved region [Enterobacter cloacae
           SCF1]
          Length = 139

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     KT   SM      +GD+L+++S+ + + GD ++  
Sbjct: 32  DYVE--KRIDLNELLVQHPSATYFVKTSGDSMKDAGIGEGDLLVVDSSRKAHHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
              G+   K L+      I L + N  Y   T+   D ++    +
Sbjct: 90  VD-GEFTVKRLLLHP--VIMLKAENSAYAPITIGTEDNLDIFGVV 131


>gi|313200966|ref|YP_004039624.1| peptidase s24 and s26 domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440282|gb|ADQ84388.1| peptidase S24 and S26 domain protein [Methylovorus sp. MP688]
          Length = 145

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 9/130 (6%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
                              +    P           +  +          +    SM  +
Sbjct: 10  QDLFHIPLPFYDISVSAGQSRFPSPAQDYEIAEIDLNKQLITNPPATFLTRVTGDSMTGV 69

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
               G IL++N A++      +++    G+++ K L       + L+S N  Y   T+  
Sbjct: 70  GIYPGSILVVNRALKPRSSSIVVVLLD-GELMVKRLYKH-AGMVKLLSENPAYAPITLTE 127

Query: 210 SDIEWIARIL 219
                I  ++
Sbjct: 128 GQELMIWGVV 137


>gi|329907089|ref|ZP_08274548.1| DNA repair protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327547097|gb|EGF31972.1| DNA repair protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 138

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              + +    +  +   +T     + Q  SM+      GD+++++ ++       +L   
Sbjct: 28  EEYLEKGLDLNQYLVRNKTATFYFRVQGDSMVGARIFDGDMVVVDRSLSPKHRSIVLAVV 87

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                  K L  R    I+L + N  Y        +   I  ++
Sbjct: 88  NAD-YTIKRLHKR-AGVIELRAENPRYAPIQFGDGETLEIWGVV 129


>gi|324114222|gb|EGC08195.1| peptidase S24 [Escherichia fergusonii B253]
 gi|325497678|gb|EGC95537.1| DNA polymerase V subunit UmuD [Escherichia fergusonii ECD227]
          Length = 139

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 88  KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
           K   L                FP+    + V   +    +  +    +     K    SM
Sbjct: 5   KPAELREIITLPLFSDLVPCGFPSPAA-DYVE--QRIDLNQLVIQHPSATYFVKAAGDSM 61

Query: 148 -LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
                  GD+L+++SAI  + GD ++     G+   K L  R   S+ L+ +N  Y   T
Sbjct: 62  IEAGIGDGDLLVVDSAITASHGDIVIAAVD-GEFTVKRLQLRP--SVQLVPMNSAYSPIT 118

Query: 207 VEMSD 211
           +   +
Sbjct: 119 LGSEE 123


>gi|283954061|ref|ZP_06371586.1| hypothetical protein C414_000080049 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794340|gb|EFC33084.1| hypothetical protein C414_000080049 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 224

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 16/131 (12%)

Query: 103 FFDSGVFPTGNK--WNTVGVPEIRSPHNGIY-----AIQTQDTRHKTQDTSMLPLYRKGD 155
           ++       G     N +   EI       Y      I T+    K    SM P    GD
Sbjct: 78  YYTDVAAAAGYGATNNQLEYTEITISKKFAYEALDLPISTKLDIIKIIGDSMEPFVHSGD 137

Query: 156 ILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMS 210
           I+ ++        V  GD ++     G+I  K L+ +     I L S+N  Y    + + 
Sbjct: 138 IIAVDITKNKLELVKNGDIVV-INLDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVISVE 196

Query: 211 DI---EWIARI 218
            I   E I  +
Sbjct: 197 QINHAEIIGVV 207


>gi|229515391|ref|ZP_04404851.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae TMA 21]
 gi|229348096|gb|EEO13055.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae TMA 21]
          Length = 198

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 50/191 (26%), Gaps = 13/191 (6%)

Query: 41  SKRFGIEGRNRWPSTESIFKILAATNETICQL--LDLPFSDGRTTEKKEKEIPLLYFPPS 98
             +  +  + R   T++     +       Q        S     +    +  +  F   
Sbjct: 1   MLKGRVHLKRRRQGTKAYEYHASILPPETQQALLGQDSGSINEPIKTYAIKPIIPDFMEE 60

Query: 99  GSGGFFDSGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLY 151
            +           G+          T  +   R   N     +        +  SM P  
Sbjct: 61  FAMIPGYRIQVSAGHGALNPENMEPTRYLAFRRKWLNYRGFNEKDLAIVWAKGDSMEPTI 120

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              D L+++ A        + I     ++  K        S  L+S N  Y    +   +
Sbjct: 121 HNNDTLVVHMARNKPQDGHIYIFRNGDELFVKRYQ-NALGSWRLISDNPIYDKLDIPKHE 179

Query: 212 ---IEWIARIL 219
               E + +++
Sbjct: 180 QHQFEVVGQVV 190


>gi|153939643|ref|YP_001390261.1| putative LexA repressor [Clostridium botulinum F str. Langeland]
 gi|152935539|gb|ABS41037.1| LexA repressor [Clostridium botulinum F str. Langeland]
 gi|295318357|gb|ADF98734.1| LexA repressor [Clostridium botulinum F str. 230613]
          Length = 531

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 35/162 (21%), Gaps = 4/162 (2%)

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K      +                   E +     +                G    
Sbjct: 363 DMDKFEYVDMKHRRSYEFSRGLGSNEEFIVEDQGSKEEYKEDELTKLPVFNDIAAGEPIL 422

Query: 117 TVGVPEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                E        +          K +  SM+      GD +++         D +   
Sbjct: 423 MNPCVEGEFNIPKYWVRGMKNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AV 481

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              G    K L+ ++  ++ LM  N  Y    +       I 
Sbjct: 482 NLEGSATLKRLLIKKSGAV-LMPENKKYKPIEIREEGASIIG 522


>gi|113460532|ref|YP_718596.1| LexA repressor [Haemophilus somnus 129PT]
 gi|170718876|ref|YP_001784049.1| LexA repressor [Haemophilus somnus 2336]
 gi|122945212|sp|Q0I2G7|LEXA_HAES1 RecName: Full=LexA repressor
 gi|189046539|sp|B0USF0|LEXA_HAES2 RecName: Full=LexA repressor
 gi|112822575|gb|ABI24664.1| SOS-response transcriptional repressor, LexA [Haemophilus somnus
           129PT]
 gi|168827005|gb|ACA32376.1| SOS-response transcriptional repressor, LexA [Haemophilus somnus
           2336]
          Length = 210

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 68/220 (30%), Gaps = 39/220 (17%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62
            +++++ I R  E   + P+   ++++ G                  R P+  E   K L
Sbjct: 11  QQEVFDLIKRHIESTGMPPTRVEISKELGF-----------------RSPNAAEEHLKAL 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A                  T  ++             + G    G    G         E
Sbjct: 54  ARKGVIEIVSGVSRGIRLLTDIEEP-----------ENEGLPLIGRVAAGEPILAEQHIE 102

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +        D   K    SM  +    GD+L ++S   +  G  ++ +    ++ 
Sbjct: 103 ATYQVDANMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDIRNGQIVVARI-EDEVT 161

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS-----DIEWIA 216
            K    + G  + L + N  +    V+++     +IE IA
Sbjct: 162 VKRFERK-GSVVYLHAENEEFEPIVVDLTQQPYFEIEGIA 200


>gi|290475034|ref|YP_003467918.1| putative phage repressor (fragment) [Xenorhabdus bovienii SS-2004]
 gi|289174351|emb|CBJ81145.1| Putative phage repressor (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 116

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI-----SRR 189
            +    +    SM P ++ GDI++++  +  N G+ ++      +   K           
Sbjct: 18  ERAFALRIDGDSMEPDFKAGDIVVIDPEVTPNPGEFVVAASYEREATFKKYRPITINIDG 77

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +  +L+ LN  YP+   +   I  I  ++
Sbjct: 78  TQHFELIPLNNDYPILDNQRIKITIIGTMV 107


>gi|307608890|emb|CBW98289.1| hypothetical protein LPW_01461 [Legionella pneumophila 130b]
          Length = 241

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 25/206 (12%)

Query: 8   KIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++ + +  + ER N LTP+ LARK G+      +     +      P   ++ +I     
Sbjct: 39  QLAQTLTDLIERENKLTPAALARKLGIPTNKITRILNGDVT----DPKASTLLQIANYFG 94

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            TI QLL L       T   E  +  L                PT               
Sbjct: 95  ITIEQLLGLESIVREGTSNIEPLVQSLPI---------YEFSHPTQMTNEWYRWSSN--- 142

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR--TGDIVAKV 184
                 +               P + +  +LI+N  +  +    +++K          K 
Sbjct: 143 -----EVDGDYFALAIDTDLYEPTFPQNSLLIVNPDMMPDDRSYIVVKRNDSPQHCSIKK 197

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMS 210
            +    +   L  +N   PV+  + +
Sbjct: 198 YVLEGNQGY-LYPINPKLPVELFDRN 222


>gi|262279851|ref|ZP_06057636.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260202|gb|EEY78935.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 263

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 40/225 (17%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            LAR  G+ P S +        G+++    E++ K       +   L            K
Sbjct: 24  DLARAVGVKPPSVSDWL----SGKSKKMEGENLLKAAKYLKVSAAWLATGVGEPTEEHNK 79

Query: 86  KEKE------------------------------IPLLYFPPSGSGGFFDSGVFPTGNKW 115
           +  +                                ++  P   S   +      +    
Sbjct: 80  EAAKVLSDAQFKIIDIEAFKKKYNISESDEAVLFSNIVEKPFMPSSKRWVPVKAYSKMGM 139

Query: 116 NTVGVPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           +   V      + G   I      ++    K    SM P  R G  ++ +   +    + 
Sbjct: 140 DGYFVDMGFEGNGGDGYIPTHTAGSKAYAVKGTGDSMFPAIRNGWYVVCDPDAEPVPMEF 199

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           + +  + G    K  I  +   + L+++N      T  M ++E I
Sbjct: 200 VQVCLKDGRCTIKEFIGIQNDVLSLIAVNGG-ERLTFNMDEVESI 243


>gi|242277598|ref|YP_002989727.1| phage repressor [Desulfovibrio salexigens DSM 2638]
 gi|242120492|gb|ACS78188.1| putative phage repressor [Desulfovibrio salexigens DSM 2638]
          Length = 228

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 19/226 (8%)

Query: 11  EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E+++R+ +     T   LA    +  +S + +KR            E   K+        
Sbjct: 7   ESLERIKKATGTRTQVQLAEILNIRQSSISDAKRRSSIP------AEWFIKLYRTHGLNP 60

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFPTGNKWN---TVGVPE 122
             L D          K +     +    +   G            +    +    V  P+
Sbjct: 61  EWLSDGIEPVYLKPGKGKIAADQILSETTAQYGQVQSRGRIVPVSSMAGEDAGAEVWKPQ 120

Query: 123 IRSPHN-GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDI 180
             S  +      ++     K + +SM P  R+   + ++ S  ++  GD   I      +
Sbjct: 121 QVSELSIPETYYRSSLVVLKAEGSSMEPSVRRDAFVGIDDSQKRLMAGDIYAIHVPYQGV 180

Query: 181 VAKVLISRR-GRSIDLMSLNCCYPVDTVEMS--DIEWIARILWASQ 223
           V + +          L   +  +P   + +   +   + R++W  Q
Sbjct: 181 VIRRVFFDPENSRFILRPDDSQHPEQYIPVENHEKHVVGRVVWVMQ 226


>gi|215486411|ref|YP_002328842.1| DNA polymerase V subunit UmuD [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264483|emb|CAS08850.1| DNA polymerase V, subunit D [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 139

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIIIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
               +   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-DEFTVKKLQLRP--TVQLIPMNSAYSPITISSEDTLDVFGVVI 132


>gi|269837733|ref|YP_003319961.1| SOS-response transcriptional repressor, LexA [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786996|gb|ACZ39139.1| SOS-response transcriptional repressor, LexA [Sphaerobacter
           thermophilus DSM 20745]
          Length = 213

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 57/218 (26%), Gaps = 24/218 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + + E I+R  E +   P+   + R   +  TS                        L 
Sbjct: 9   QQMMLEYIERFLEENTYPPTIREIQRDLNISSTSVVDY-------------------NLN 49

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
              +      +   S G     +   +  +   P          +    +         I
Sbjct: 50  ILEQRNLIRRNRNISRGIELVNRPVPVRNIVQVPVIGQIAAGEPIPVLDDIVIDETTETI 109

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL-LIKPRTGDIV 181
               + I +        + +  SM+      GDI+IL        G+ + +      +  
Sbjct: 110 NISSDLIGSRTDGLFALRVKGMSMIDALINDGDIVILRHQQTCENGETVAVWLRAEKETT 169

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K      G  I L   N           ++E   +++
Sbjct: 170 LKRFY-HEGSRIRLQPANATMSPIYTTPDNVEIQGKLV 206


>gi|308186721|ref|YP_003930852.1| UmuD protein [Pantoea vagans C9-1]
 gi|308057231|gb|ADO09403.1| UmuD protein [Pantoea vagans C9-1]
          Length = 139

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            +     +    SM       GD+L+++S++  + GD ++     G+   K L       
Sbjct: 48  PSATYFVRVSGESMIEAGINDGDMLVVDSSLTASHGDIVVAAVD-GEFTVKRLQLHP--C 104

Query: 193 IDLMSLNCCYPVDTVEMSD-IEWIARI 218
           + LM +N  +    ++  D +E    +
Sbjct: 105 LQLMPMNTKFKPIAIQTEDALEVFGVV 131


>gi|253999315|ref|YP_003051378.1| peptidase S24 and S26 domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253985994|gb|ACT50851.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4]
          Length = 148

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 11/141 (7%)

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
                          +PP        +  FP+    + V   +  S  + +    T    
Sbjct: 9   QPANVTAIMAHHPGVYPPMPLYDNPVAAGFPSPAA-DHVE--DRLSADDYLVGNPTATYF 65

Query: 140 HKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
            + +  SM+      GD+L+++ +I  + G  +++    G+   K L         L+  
Sbjct: 66  VRVKGDSMIDAGIFDGDVLVVDRSITPSIG-HVVLAELDGEFTVKYL-----GRGQLLPA 119

Query: 199 NCCYPVDTVEMSD-IEWIARI 218
           N  Y     +    +E +  +
Sbjct: 120 NPAYQPIKFKDGQTVEIVGVV 140


>gi|15081541|ref|NP_150054.1| transcription regulator phage-related [Clostridium perfringens str.
           13]
 gi|15076774|dbj|BAB62499.1| probable transcription regulator phage-related [Clostridium
           perfringens str. 13]
          Length = 367

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 10/180 (5%)

Query: 41  SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           SK+           T +  KI+  +   I  L      +    + KE             
Sbjct: 183 SKKRTDRMYEELFRTLNREKIINDSILKIKNLSKENKLELLKEKAKENNYEEFTKLKILG 242

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
                   +   +  +T+ +P      N  Y         +    SM  ++     +I+ 
Sbjct: 243 KISAGIPHYACEDLIDTIYLPNQFFKPNFEY------FGLRIFGDSMNKMFDNDFTIIVR 296

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--NCCYPVDTVEMSDIEWIARI 218
                  GD ++      +   K +  +    I L+    N  + +   +   +  +  +
Sbjct: 297 KTNSFINGDIVVAII-GDEATCKEI-KQVENYIYLIPHSTNPEHQIQKYKADQVMILGVV 354



 Score = 40.1 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          E +    ++  LT   LA+K G+  ++ +  +   IE         ++ K++  
Sbjct: 11 ENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNI--FVLITLSKLMNC 62


>gi|331666049|ref|ZP_08366943.1| repressor protein phage e14 [Escherichia coli TA143]
 gi|331057100|gb|EGI29094.1| repressor protein phage e14 [Escherichia coli TA143]
          Length = 185

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 8/177 (4%)

Query: 46  IEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFF 104
            +G  +         I    +  +  L     +   T +         +   P  S    
Sbjct: 2   GDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQA 61

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
            +        ++ V +      +             +    SM+  YR GD++ ++  + 
Sbjct: 62  GAWK---EVGYSEVDL-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVP 117

Query: 165 VNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
              GD ++     TG+   K LI    +   L +LN  +P   ++++ +   I  ++
Sbjct: 118 ACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 173


>gi|261339962|ref|ZP_05967820.1| UmuD protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317875|gb|EFC56813.1| UmuD protein [Enterobacter cancerogenus ATCC 35316]
          Length = 139

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  + +  +     K    SM       GD+L+++S++    GD ++  
Sbjct: 32  DYVE--QRIDLNELLVSHPSSTYFVKAAGDSMIEAGIGHGDLLVVDSSLNAEHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
              G+   K L  R   ++ L  +N  Y    V   D ++    +
Sbjct: 90  -VEGEFTVKRLQLRP--TVQLNPMNSAYSPIIVGSEDTLDIFGVV 131


>gi|330959810|gb|EGH60070.1| putative UV resistance protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 143

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           +    P        + A        + +  SM P     G  LI++ A     GD ++  
Sbjct: 35  DHYEPPISLDELVELRA--PHVWLGEAEGMSMQPCGIVSGSRLIIDRARPPKVGDVVV-A 91

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
                 V K L   +  S  L S N  YP       +IE    + W+
Sbjct: 92  YIFNQPVVKRLDKSQNGSWVLSSDNPKYPPIE-GTEEIEVFGVVTWS 137


>gi|315124225|ref|YP_004066229.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017947|gb|ADT66040.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 208

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 24/187 (12%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           + P + +  +             E + KI    N ++  +        R  +   +    
Sbjct: 29  IKPNTLSTWRTRNTIP------YELLLKISKEQNISLDSIFFGK---MRINDDNLQLRYY 79

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT--QDTRHKTQDTSMLPL 150
                +   G  +S +           +   +        +    +    K    SM P 
Sbjct: 80  TDVAAAAGYGAINSKL-------EYTEIVISKKFACEALGLPPLTRLDIIKVIGDSMEPF 132

Query: 151 YRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVD 205
              GD++ ++ +      V  GD ++     G+I  K L+ +     I L S+N  Y   
Sbjct: 133 IHNGDVIAVDVSKNKLELVKNGDIVV-INLDGEIYCKKLLKQPFVNEIVLSSMNSFYKDI 191

Query: 206 TVEMSDI 212
            V +  I
Sbjct: 192 VVNIDQI 198


>gi|227522664|ref|ZP_03952713.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus hilgardii ATCC 8290]
 gi|227090184|gb|EEI25496.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus hilgardii ATCC 8290]
          Length = 155

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 5/114 (4%)

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
                      +GV   G     V     R   N    +   D   K    SM P +   
Sbjct: 30  VVELPLEILNIAGVASAGTGEELVD---ERDQINYRGELPKFDFAIKINGDSMEPRFHDQ 86

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
            + ++  A +   G  ++     G    K    +  ++  L+SLN  Y    V+
Sbjct: 87  QVALVKKAFEAENGQIVIAYVD-GRSYIKQF-EQTEQTCRLVSLNRKYAPIEVQ 138


>gi|116074633|ref|ZP_01471894.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9916]
 gi|116067855|gb|EAU73608.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. RS9916]
          Length = 127

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V V      +  +    +     +    SM+      GD+L+++ ++    G  ++
Sbjct: 18  ADDYVDV--GIDLNEQLIRHPSSTFFLRVSGDSMIGAGIHDGDLLVVDRSLNPRPGRIVV 75

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G    K L+    R + L + N  YP   +   +D++ 
Sbjct: 76  AILD-GAFTLKRLMRD-QRGLHLEAANPAYPCLDLHHCTDVQI 116


>gi|206578336|ref|YP_002238664.1| protein UmuD homolog [Klebsiella pneumoniae 342]
 gi|206567394|gb|ACI09170.1| protein UmuD homolog [Klebsiella pneumoniae 342]
          Length = 160

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 13/155 (8%)

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           I + +  T       +        T  +  + + L  +      GF          + + 
Sbjct: 2   ICRPVKTTVYKNSVNVSEFIMQFYTPVELRQIMLLPLYSDLVQCGFPSPAQDYVEQRIDL 61

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
             +              +     K    SM      +GD+L+++S+     GD ++    
Sbjct: 62  NELLVNH---------PSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAAVD 112

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            G+   K L       + L  +N  Y    V   D
Sbjct: 113 -GEFTVKKLQLHP--RVQLNPMNPAYSPIVVGSED 144


>gi|300813616|ref|ZP_07093945.1| putative LexA repressor [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512273|gb|EFK39444.1| putative LexA repressor [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 98

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           +         K    SM+ +    GD +I+        GD++L      +   K     +
Sbjct: 7   FVRDRDLFILKVSGESMINVGILDGDYVIIQRTNYAENGDKVLALIN-DEATIKTFYKEK 65

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                L   N       V+  D++ +  I+
Sbjct: 66  DG-FRLQPENDFMKPIYVK--DLKILGTIV 92


>gi|218296748|ref|ZP_03497454.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23]
 gi|218242837|gb|EED09371.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23]
          Length = 233

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 35/216 (16%)

Query: 17  AERHNL-TPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAATNETICQLL 73
                + +    +R+ G+   +     R      G    P+ +++  +  A +  + +L+
Sbjct: 33  MREWGINSLEEFSRRVGIPRGTIYYLVRGRQTKAGTWVKPNIDTLVALSKALDVPLHELV 92

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT----GNKWNTVGVPEIRSPHNG 129
                                 P +    +      P     G     +     R+    
Sbjct: 93  YRLE------------------PSAPGYEYRFEHHIPILGYVGGGPAQLEEIGDRTVPVR 134

Query: 130 IYAIQTQDTRHKTQDTSMLPL---YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
           +    +     K +  SM         GDI+I+N+  + + G  ++ +      V K + 
Sbjct: 135 VKGSASHLVAFKVRGNSMCAGRRPVCDGDIIIVNTQDKGHPGAIVVARLDEDSYVVKKM- 193

Query: 187 SRRGRSIDLMSLNCCYP--VDTVEMSDI-EWIARIL 219
                +  L S N   P     + +  + E + R++
Sbjct: 194 -GPDGT--LYSTNPEEPNGPPVIPVDQVAEIVGRVV 226


>gi|146311865|ref|YP_001176939.1| DNA polymerase V subunit UmuD [Enterobacter sp. 638]
 gi|145318741|gb|ABP60888.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Enterobacter sp. 638]
          Length = 139

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM       GD+L+++S+     GD ++  
Sbjct: 32  DYVE--QRIDLNELLVQHPSATYFVKAAGDSMIEAGISDGDLLVVDSSRTAEHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              GD   K L  R    + L  +N  Y    +   D
Sbjct: 90  -VEGDFTVKRLQLRPN--VQLNPMNSAYSPIIIGSED 123


>gi|290476944|ref|YP_003469855.1| hypothetical protein XBJ1_3975 [Xenorhabdus bovienii SS-2004]
 gi|289176288|emb|CBJ83093.1| hypothetical protein XBJ1_3975 [Xenorhabdus bovienii SS-2004]
          Length = 247

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 21/237 (8%)

Query: 3   SFSHKKIWEAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
             +       +  +  +H     + +  A   G+ P+  ++                 I 
Sbjct: 1   METKDIRRNNLRTLMTQHVRQGTSKTAFAELIGIPPSQLSQLTSDNAVRNIGDIIARRIE 60

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY-----FPPSGSGGFFDSGVFPTGNK 114
             L      +     L  +   + +++  E   L                    F  G  
Sbjct: 61  VNLELPIGWLDIPQQLIDNRDNSHKERNNENYHLQNISHKVTDLSYRIEQLDVEFSCGGG 120

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHK---------TQDTSMLPLYRKGDILILNSAIQV 165
                 P+I            +    +             SML     G++++L+  +  
Sbjct: 121 RLNSDYPDIVRSIEVDPEYAKRMFGCRPSTSLKLTTALGDSMLGTINPGELVVLDITVSR 180

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219
              D +        +  K L   +   I ++S N  Y    ++            ++
Sbjct: 181 FMSDGIYAFTYGDGMHIKRLQLLKD-RIVVISDNQIYDRWEIDSENESKFHIHGFVV 236


>gi|326562630|gb|EGE12935.1| peptidase S24-like protein [Moraxella catarrhalis 7169]
          Length = 204

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 53/199 (26%), Gaps = 16/199 (8%)

Query: 38  FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
             +  +   + + R    + + + L      +         +        +         
Sbjct: 3   IRRYSKG--QAKPRNDKMKLLAQCLGVPITWLDYGEGEMTKNNYKLAPITEWDDSTPLDD 60

Query: 98  SGSGGFFD-SGVFPTGNK-------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
             +   F     F  G           T  +   +   + +  +         +D SM+P
Sbjct: 61  DEAEIPFYKDIAFACGYGAVNDDVTHETRKLRMGKRTLSNLGVMPENAFAVTARDDSMMP 120

Query: 150 LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDT-- 206
             + GD + ++   +     R+         + K L       + ++S N   +P     
Sbjct: 121 YVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVAT 180

Query: 207 ---VEMSDIEWIARILWAS 222
              +   + E +  +   S
Sbjct: 181 KQQISDGEFEVLGWVWSVS 199


>gi|330950358|gb|EGH50618.1| peptidase [Pseudomonas syringae Cit 7]
          Length = 147

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 10/135 (7%)

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPHNGI-YAIQTQDTRHKTQDTSM-- 147
           +   P+    +        G     V    P     ++   Y  +      + +  SM  
Sbjct: 8   MIHQPAQMYRYPVVSWVAAGGWSEAVEPYAPGAADEYDVSDYQAKGPAFWLEVKGDSMTA 67

Query: 148 --LPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
              P   +G  +++++   V  G  ++     + +   K L+   G    L  LN  YP 
Sbjct: 68  PTAPSIPEGSQILVDTRADVRPGKLVIAKLAGSNEATFKKLVEDGGVRY-LKPLNSAYPT 126

Query: 205 DTVEMSDIEWIARIL 219
                 D   I  ++
Sbjct: 127 VQC-ADDCRIIGVVV 140


>gi|300088463|ref|YP_003758985.1| LexA family transcriptional regulator [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528196|gb|ADJ26664.1| transcriptional repressor, LexA family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 217

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 24/216 (11%)

Query: 8   KIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+ E I      + + PS   +     +  TS        +E        + + + +   
Sbjct: 15  KMLEYIRNYFNDYGIPPSIRDIVSGCNISSTSVADYNLRHLERAGYIRRHKDVSRGIELL 74

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 L  +P        +      +  + P  +                 V VPE   
Sbjct: 75  GSEGRPLQLVPLLGKIAAGRPIPVPDVETWKPELAA--------------ENVDVPETMI 120

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLY-RKGDILILNSAIQVNCGDRL-LIKPRTGDIVAK 183
            H+            K +  SM+      GDI+I+ +A  V  G    +      +   K
Sbjct: 121 GHH------KNLFALKVRGNSMIDALVNDGDIVIMQAADDVENGQMAAVWLKNEKEATLK 174

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +       + L   N           ++    R++
Sbjct: 175 KVFREANGKVRLQPANALMTPMYENAKNVVIQGRVI 210


>gi|260867589|ref|YP_003233991.1| DNA polymerase V subunit D [Escherichia coli O111:H- str. 11128]
 gi|257763945|dbj|BAI35440.1| DNA polymerase V subunit D [Escherichia coli O111:H- str. 11128]
 gi|323179304|gb|EFZ64874.1| protein umuD [Escherichia coli 1180]
          Length = 139

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
              G+   K L  R   ++ L+ +N  Y   T+   D ++    ++
Sbjct: 90  VD-GEFTVKKLQLRP--TVQLIPMNSAYSSITISSEDTLDVFGVVI 132


>gi|206579793|ref|YP_002239124.1| protein UmuD homolog [Klebsiella pneumoniae 342]
 gi|288936023|ref|YP_003440082.1| peptidase S24/S26A/S26B, conserved region [Klebsiella variicola
           At-22]
 gi|290512829|ref|ZP_06552194.1| DNA polymerase V [Klebsiella sp. 1_1_55]
 gi|206568851|gb|ACI10627.1| protein UmuD homolog [Klebsiella pneumoniae 342]
 gi|288890732|gb|ADC59050.1| Peptidase S24/S26A/S26B, conserved region [Klebsiella variicola
           At-22]
 gi|289774712|gb|EFD82715.1| DNA polymerase V [Klebsiella sp. 1_1_55]
          Length = 139

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM       GD+L+++ ++    GD ++  
Sbjct: 32  DYVE--DRLDLNKLLIKHPSATYFIKVSGESMRDAGISDGDLLVVDRSLSAVHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              G+   K L +     + L+  N  Y   +     ++E    ++
Sbjct: 90  I-AGEFTVKELRTHP--FLQLVPHNRDYASISFHNAEELEIFGVVI 132


>gi|323957141|gb|EGB52866.1| peptidase S24 [Escherichia coli H263]
 gi|324112045|gb|EGC06023.1| peptidase S24 [Escherichia fergusonii B253]
 gi|332341602|gb|AEE54936.1| e14 phage repressor protein [Escherichia coli UMNK88]
          Length = 185

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 8/177 (4%)

Query: 46  IEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFF 104
            +G  +         I    +  +  L     +   T +         +   P  S    
Sbjct: 2   GDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQA 61

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
            +        ++ V +      +             +    SM+  YR GD++ ++  + 
Sbjct: 62  GAWK---EVGYSEVDL-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVP 117

Query: 165 VNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
              GD ++     TG+   K LI    +   L +LN  +P   ++++ +   I  ++
Sbjct: 118 ACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCSIIGTVI 173


>gi|58616539|ref|YP_195669.1| DNA repair protein [Azoarcus sp. EbN1]
 gi|56316002|emb|CAI10645.1| DNA repair protein [Aromatoleum aromaticum EbN1]
          Length = 158

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              ++ +            +  SM       GDIL+++ ++    G  ++I    G+ + 
Sbjct: 55  LDINDYLVRNPVSTFYFPVKGDSMQGAQVFDGDILVVDRSVMPAHG-HVVIAFVNGERLV 113

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K    R G  I L++ N  YP   +       I  ++
Sbjct: 114 KRFHRR-GDRIALLAENPGYPPLELTEGSELVIWGVV 149


>gi|84391257|ref|ZP_00991588.1| Putative repressor protein of prophage [Vibrio splendidus 12B01]
 gi|84376546|gb|EAP93424.1| Putative repressor protein of prophage [Vibrio splendidus 12B01]
          Length = 240

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 55/235 (23%), Gaps = 21/235 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSG----LARKA--GLDPTSFNKSKRFGIEGRNRWPS-T 55
               ++    ++   ++  +   G    L +     +      K          +  S  
Sbjct: 1   MDKQQQFTLRLNEACDQAGIPQRGRSAYLQKILPFKISTAGIRKWLVGEAVPDTKKLSDI 60

Query: 56  ESIFKIL--AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            S+ ++           ++  L          +     L       + G     +     
Sbjct: 61  ASLLEVSVEHLLGNVALKVNVLTEGKQDQAFFEHAMKHLPNAQFIDTSGLKAIPILSQVQ 120

Query: 114 KWNT----VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILNSAIQ 164
             N     +                +     K    SM      P    G I+++     
Sbjct: 121 AGNWQTVIIDQDTEFKWQTVAANTSSNAFAMKVSGNSMTNPHGSPSIPAGSIVVVEPCNC 180

Query: 165 VNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            + G  ++       +   K L     +   L+ LN  Y    +  +    +  +
Sbjct: 181 PDNGKIVVATLNDAPEATIKKLEIDGPQKF-LVPLNPKYDPIPINGN-CRIVGYV 233


>gi|213023499|ref|ZP_03337946.1| DNA polymerase V subunit UmuD [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 99

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 127 HNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           +  + +  +     K    SM       GD+L+++S+   + GD ++     G+   K L
Sbjct: 1   NELLVSHPSSTYFVKATGDSMIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRL 59

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
             R   ++ L+ +N  Y    V   D ++    +
Sbjct: 60  QLRP--TVQLIPMNGAYRPIPVGSEDTLDIFGVV 91


>gi|170759678|ref|YP_001786294.1| putative LexA repressor [Clostridium botulinum A3 str. Loch Maree]
 gi|169406667|gb|ACA55078.1| LexA repressor [Clostridium botulinum A3 str. Loch Maree]
          Length = 535

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM+      GD +++         D +      G    K L+ ++  ++
Sbjct: 446 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 504

Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
            LM  N  Y    +       I 
Sbjct: 505 -LMPENKKYKPIEIREEGASIIG 526


>gi|329113614|ref|ZP_08242393.1| Phage Repressor [Acetobacter pomorum DM001]
 gi|326697060|gb|EGE48722.1| Phage Repressor [Acetobacter pomorum DM001]
          Length = 264

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 67/214 (31%), Gaps = 28/214 (13%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
             ++ K+G+  ++ N           R     +  K+  A N ++  LL    +D    +
Sbjct: 51  RAVSEKSGIPLSTLNTYIGG------RDMRVSAAAKLAFACNVSLSWLLLGQDADEPLLK 104

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW----NTVGVPE----IRSPHNGIYAIQTQ 136
               +   L    +    + D         +    +    PE      +   G   +   
Sbjct: 105 INLPQGQSLP-SQANDVAYIDYYNIAASAGYGVCADAGVRPEKVAVSLAFLKGDLGLDPN 163

Query: 137 DT-RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
                +T   SM P  R GD L++++  +       ++    G ++ K L S     I +
Sbjct: 164 YVLMLETSGDSMEPTLRSGDRLLVDTRRRHILDGIHVLVVN-GGLLVKRLSSEPSGKICI 222

Query: 196 MSLNCCYPVDTVEMSD-----------IEWIARI 218
            S N  Y     + S            I  I R+
Sbjct: 223 ASDNHLYKEFLTDASRFRWGEPDGDDAITIIGRV 256


>gi|209963569|ref|YP_002296484.1| DNA-binding protein (HTH domain), putative [Rhodospirillum centenum
           SW]
 gi|209957035|gb|ACI97671.1| DNA-binding protein (HTH domain), putative [Rhodospirillum centenum
           SW]
          Length = 203

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 58/215 (26%), Gaps = 30/215 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  +     ++ S LA K GL     +K +      R      + + K+  A      
Sbjct: 11  SRLRSLRTARGMSLSALAAKVGLSKGELSKLETGVRPLRP-----DHVAKLARAFEIAPS 65

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L+    +       +   +PL                 P G     V  P         
Sbjct: 66  DLVGEASALRAMIAPEPATLPLY---DGRDLARVGDAAEPIG----RVDAPAQLRSVPDA 118

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           YA           D S  P    G +L ++       GD ++ +     +    L     
Sbjct: 119 YA-------ITINDLSNAPALMPGVVLHVHPGRAPALGDLVVNRVSWSPLAF-YLRQDDD 170

Query: 191 RSID---LMSLNCCYPVDTVEMSDIEWIARI--LW 220
                  L           + + ++E + ++  +W
Sbjct: 171 GRFYGLTLSR-----RRVELSLEEVERLHKVAGIW 200


>gi|172046050|sp|Q65UK9|LEXA_MANSM RecName: Full=LexA repressor
          Length = 213

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 31/210 (14%)

Query: 6   HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKIL 62
            ++++  +    E   + P  + ++R+ G                  R P+  E   K L
Sbjct: 11  QQEVFNFLKHHIETTGMPPTRAEISRELGF-----------------RSPNAAEEYLKAL 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A           +      T+      +           G    G    G         E
Sbjct: 54  ARKG--------VVEILSGTSRGIRLLVDTEESANDEDAGLPLIGRVAAGEPILAEQHIE 105

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +        D   K    SM  +    GD+L ++S   V  G  ++ +    ++ 
Sbjct: 106 GTYKVDADMFKPQADFLLKVYGQSMKDIGILDGDLLAVHSTKDVRNGQVIVARI-EDEVT 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K L  + G  + L + N  +    V + +
Sbjct: 165 VKRLERK-GDVVYLHAENEEFKPIVVNLKE 193


>gi|323652315|gb|ADX98396.1| phage repressor protein, putative [Campylobacter jejuni]
          Length = 115

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 3/109 (2%)

Query: 112 GNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           G   + +   E+      + +    +         SM PL + G I +++          
Sbjct: 3   GGINDLIDCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSI 62

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +       +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 63  CV-INARDGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 109


>gi|289667313|ref|ZP_06488388.1| LexA repressor [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 112

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E +   +        D   + Q  SM+      GD++ ++ + +   G  ++ +   G+I
Sbjct: 9   ERQLWLDRALFSLRPDYLLQVQGDSMIDDGILDGDLVGVHRSNEARDGQIVVARVD-GEI 67

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             K L       I L+  N  +    V   
Sbjct: 68  TIKRLER-GAERIRLLPRNRAHAPIVVAAD 96


>gi|87120542|ref|ZP_01076436.1| UmuD protein; UmuD' protein [Marinomonas sp. MED121]
 gi|86164185|gb|EAQ65456.1| UmuD protein; UmuD' protein [Marinomonas sp. MED121]
          Length = 149

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 6/129 (4%)

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSM-LPLY 151
           +   +     F       G         E     +             + Q  SM     
Sbjct: 14  FIDANSVQIPFYVEPVSAGFPSPADDFIERKLDLNALCIKHPEATFFVRVQGESMSEAGI 73

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS- 210
              D+LI++ ++    GD ++     G++  K L+ +    + L   N  Y    +    
Sbjct: 74  YNHDVLIVDRSLTARHGDFVIACI-HGEMTVKELVLKPN--VALRPKNKAYAAIAITEES 130

Query: 211 DIEWIARIL 219
           +++    ++
Sbjct: 131 ELDVFGVVI 139


>gi|167586258|ref|ZP_02378646.1| putative prophage repressor [Burkholderia ubonensis Bu]
          Length = 201

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 30/197 (15%)

Query: 3   SFSHKKIW---EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
             + +++      I  + +R  L+ + LARK G+ P + ++      E     P   ++ 
Sbjct: 1   METSQRLVLMVARIRALMQRQGLSDADLARKTGVSPATLSRVLSMATE----DPRISTVM 56

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            I  A   T   +  L  S+            +L +         ++          TV 
Sbjct: 57  AIADALGTT---VGYLLQSERAYPIPILGWDEMLGYARGVYDVARNTRWL-------TVD 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            P       G +A +T+         SM P +R+G I+I+   I       ++     G+
Sbjct: 107 TP----RRPGTFAARTK--------PSMAPRFREGSIVIVEPGIAFRDAQVVVAAIDGGE 154

Query: 180 IVAKVLISRRGRSIDLM 196
              + +  + G ++ L 
Sbjct: 155 PTLRRVT-QDGEAVWLK 170


>gi|15988316|pdb|1JHE|A Chain A, Lexa L89p Q92w E152a K156a Mutant
 gi|15988317|pdb|1JHE|B Chain B, Lexa L89p Q92w E152a K156a Mutant
          Length = 135

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 3/116 (2%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155
                G    G    G         E     +        D   +    SM  +    GD
Sbjct: 3   QEEEEGLPLVGRVAAGEPLPAQWHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGD 62

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           +L ++    V  G  ++ +     +    L  + G  ++L+  N  +    V++  
Sbjct: 63  LLAVHKTQDVRNGQVVVARID-DAVTVARLKKQ-GNKVELLPENSEFKPIVVDLRQ 116


>gi|320538859|ref|ZP_08038535.1| DNA-binding transcriptional repressor of SOS regulon [Serratia
           symbiotica str. Tucson]
 gi|320031019|gb|EFW13022.1| DNA-binding transcriptional repressor of SOS regulon [Serratia
           symbiotica str. Tucson]
          Length = 202

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 59/216 (27%), Gaps = 38/216 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   ++++E I     +  + P  + +A + G                  R P+  
Sbjct: 1   MKALTTRQQEVYELIRDHILQTGMPPTRAEIAMRLGF-----------------RSPNA- 42

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                         +      +     E        +        G    G    G    
Sbjct: 43  -------------AEEHLKALARKGVIEIISGASRGIRLLMEDEEGLPLIGGVAAGEPLL 89

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L +     V  G  ++ + 
Sbjct: 90  AQQHIEGHYKVDPSLFKPNADFLLRVIGMSMRDIGILDGDLLAVYKTQDVRNGQVIVARI 149

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              ++  K L  + G  ++L+  N  +    V++  
Sbjct: 150 -EDEVTVKRL-KKSGNMVELLPENNEFQPIVVDLRQ 183


>gi|297627274|ref|YP_003689037.1| Prophage repressor precursor (peptidase family S24)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923039|emb|CBL57622.1| Prophage repressor precursor (Peptidase family S24)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 144

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +   +      +    SM+      GD L+++ ++    GD ++     
Sbjct: 38  YFDGDVDLNEHLLVNRPASFIVRVAGDSMIGAGIFDGDELVVDRSLDPVDGDVVIAVVD- 96

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            ++  K L        +L   N  YPV     +D+     +
Sbjct: 97  NELTVKTLH-LGESGPELRPENPAYPVIR-PATDLRVWGVV 135


>gi|296122490|ref|YP_003630268.1| LexA repressor [Planctomyces limnophilus DSM 3776]
 gi|296014830|gb|ADG68069.1| LexA repressor [Planctomyces limnophilus DSM 3776]
          Length = 198

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 34/154 (22%), Gaps = 5/154 (3%)

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ +I           +              +E  +               +   G    
Sbjct: 28  TVREIGTHFGIRSPNGVMCHLKALERKGLISRESHMSRAIQLADSPASRMTLPMAGQIAA 87

Query: 117 TVGVPEIRSPHNGIYA---IQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
            + V   +      ++           + +  SM      +GD +++        G+ ++
Sbjct: 88  GIPVLAEQQEERVDFSHLFDSEDHFCLRVKGDSMIEDQIAEGDYVVIKRQADARDGEIVV 147

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
                 D   K         I L   N       
Sbjct: 148 ALVDGVDATLKRFYREP-TRIRLEPANSTMKPIY 180


>gi|99080630|ref|YP_612784.1| putative phage repressor [Ruegeria sp. TM1040]
 gi|99036910|gb|ABF63522.1| HTH-type transcriptional regulator prtR [Ruegeria sp. TM1040]
          Length = 238

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 70/214 (32%), Gaps = 29/214 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           EA+DR  +   L+   LA KAG+      K ++    G+++  + E   KI  A   +  
Sbjct: 36  EALDRAQDATGLSMRKLADKAGVSYEQLKKVRQ----GKSQTTNAEDALKIATAVGVSF- 90

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                              I +     +G+           G+    V  P    PH   
Sbjct: 91  ------EQFMSGEFDASPTISIAGKVGAGAQVPVFDAYEK-GDGP-QVECPPGIGPHG-- 140

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-----LIKPRTGDIVAKVL 185
                     + +  SM P+Y  GD+L  +     +  D +     + +   G    K +
Sbjct: 141 ------VVAVEVEGDSMEPVYSAGDLLFYSRNGHDSVPDDVIGYKCVCEDADGMGWVKQV 194

Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +        L+SLN            ++W AR+
Sbjct: 195 KAGDEPGLFHLISLNPTGANMW--NVRLKWAARV 226


>gi|284040423|ref|YP_003390353.1| phage repressor [Spirosoma linguale DSM 74]
 gi|283819716|gb|ADB41554.1| putative phage repressor [Spirosoma linguale DSM 74]
          Length = 237

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 56/221 (25%), Gaps = 16/221 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + + ++ +   +T   +A++ G +P+ F        +     PS ++I  +LA   + 
Sbjct: 15  IQDRLKQVFDALGITIYQIAKELGENPSKFYNILNGRAK-----PSYDTIMSLLACYPQI 69

Query: 69  ICQL--LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                   +                                 F                 
Sbjct: 70  SADYLIRGILPILNSPQANARLLSADDDTIEVPFIPVKFYATFVESFAEGIHATDVDSFR 129

Query: 127 HNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIV 181
                          +    SM P    G  ++         +   G  +         V
Sbjct: 130 VRKPIVKGHKNSVVLEISGNSMSPQLAHGAKVLAIPVSENNWEYQSG-GVYAVMYRDYFV 188

Query: 182 AKVLI---SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K +        + + L S N      TV + DI  + +I+
Sbjct: 189 VKRIRDNELLTKKYLTLHSDNPNGGNVTVPLQDIRGLWKIV 229


>gi|146351269|ref|YP_001210496.1| putative UmuD-like protein [Arthrobacter nitroguajacolicus]
 gi|146218833|emb|CAL09904.1| putative UmuD-like protein [Arthrobacter nitroguajacolicus]
          Length = 143

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +    T     +    SM       GD LI+N A++   G  ++     
Sbjct: 37  YFDGRIDLNEYLIKDVTSTFIVRVTGQSMEQAGISDGDELIVNRALEPKDGSVVIAVLD- 95

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
           G++  K L       + L + N  +P   V   S++  
Sbjct: 96  GELTIKRL-RITASGVVLQADNPGFPDIKVPALSELTI 132


>gi|29691170|gb|AAO89163.1| RulA [Pseudomonas cichorii]
          Length = 141

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 8/129 (6%)

Query: 95  FPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150
              SG    F +   P G      + +           + A        K    SM    
Sbjct: 9   LSESGKVIPFYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAK 66

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
                +++++ +     G  ++      + + K+L+ + G  + L S N  YP   +   
Sbjct: 67  IFHDSLVVVDRSRTPVSGSIVIAALN-NEPLCKILVIQ-GEHVVLKSANPAYPPRHILEG 124

Query: 211 DIEWIARIL 219
           +   I  ++
Sbjct: 125 EDLSIWGVV 133


>gi|323700030|ref|ZP_08111942.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio sp. ND132]
 gi|323459962|gb|EGB15827.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio
           desulfuricans ND132]
          Length = 153

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              + +    +  +          +    SM+      GD+L+++ ++    G+ ++I  
Sbjct: 45  EEYLEKRLDLNEHLVTRPEATYFVRVSGDSMIGAGIHHGDLLVVDRSLDPRPGN-VVIAL 103

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   K L  +    ++L   N  Y    +       I  ++
Sbjct: 104 VEGEFTVKRL-RKSPLGLELAPENPEYVAILLSEETDFLIWGVV 146


>gi|148807316|gb|ABR13390.1| hypothetical protein [Pseudomonas aeruginosa]
          Length = 143

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +           I A        +    SM+      GD+++++ + +   GD ++  
Sbjct: 33  DHLEREISLDEILQIRA--PHTYLVRAGGDSMIRAGIHDGDLMVVDRSREAEPGDIVIAA 90

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
              G+   K L    G  + L + N  Y    +   D   +  ++  S
Sbjct: 91  VN-GEPTVKRLAKD-GSQVVLRAENPRYAPRYILEGDELLVWGVVRYS 136


>gi|78357989|ref|YP_389438.1| DNA-binding protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220394|gb|ABB39743.1| DNA-binding protein, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 231

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 61/237 (25%), Gaps = 24/237 (10%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +  +++E I         T   LA    +  +S + +KR            +   K+ 
Sbjct: 1   MSTFDEVFERIKMATNTR--TQVELAEVLDIRQSSISDAKRRNSVPS------DWYMKLF 52

Query: 63  AATNETICQLLDLPFSDG------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    L                        +  ++      P + S       +  
Sbjct: 53  EKFGLNPDWLKMGSGPMYLRTEQGYQPVDGPAAGQVFEDPAKYGDPDAKSTVVTVYAMHD 112

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGD 169
                  +    +                 +   TSM PL  KG  + L++  + +  G+
Sbjct: 113 DQAAEEELPHKSLSKLSVPQSFAGAAMQVFRVDATSMEPLIAKGAFVCLDTQQKSIISGE 172

Query: 170 RLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIE--WIARILWASQ 223
              +      I  + +      +   L S N   P   + +       + R+ W  Q
Sbjct: 173 LYGVFIPYEGIAIRRVFLDAQNQRFILRSENPALPEQYLPLGKHHSSIVGRVSWVLQ 229


>gi|282879124|ref|ZP_06287883.1| peptidase, S24 family [Prevotella buccalis ATCC 35310]
 gi|281298766|gb|EFA91176.1| peptidase, S24 family [Prevotella buccalis ATCC 35310]
          Length = 145

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 8/116 (6%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
           FP+        + +    +             +    SM+      GDI +++ +++   
Sbjct: 27  FPSPAGD---YLQDSLDFNRDFIRHPDATFYGRVSGDSMIDAGINDGDIAVIDRSVEAGH 83

Query: 168 GDRLLIKPRTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARILW 220
            D ++     G+   K L         I+L   N  +    V E+   E    ++W
Sbjct: 84  NDVIVAYFN-GEFTIKYLDMTHVHEGYIELRPANKAFRPIRVSELDKFEVWGVVVW 138


>gi|156933900|ref|YP_001437816.1| hypothetical protein ESA_01726 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532154|gb|ABU76980.1| hypothetical protein ESA_01726 [Cronobacter sakazakii ATCC BAA-894]
          Length = 143

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V        H  ++         +    SM       GD+L+++SA++   GD ++  
Sbjct: 36  DYVEKRVSLDAHCIVH--PNATYFLRAAGESMNGAGIEDGDLLVVDSALKPQEGDIVVAA 93

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221
              G+   K L         L+ +N  +    +    ++     + W 
Sbjct: 94  -LEGEFTVKTLRLHP--VAQLVPMNPDFAPIPLGGDAEVVIFGVVTWV 138


>gi|152969737|ref|YP_001334846.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238894236|ref|YP_002918970.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae NTUH-K2044]
 gi|330007476|ref|ZP_08305957.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
 gi|150954586|gb|ABR76616.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
           complex with UmuC [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546552|dbj|BAH62903.1| DNA polymerase V subunit D [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328535458|gb|EGF61927.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
          Length = 139

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+     +GD+L+++SA +   GD ++  
Sbjct: 32  DYVE--KRIDLNELLVQHPSATYFVKAAGDSMIDAGIDEGDLLVVDSARKAEHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
              G+   K L       + L  +N  Y    V   + ++    +
Sbjct: 90  -VGGEFTVKKLQLLP--RVQLNPMNPAYSPIVVGREETLDIFGVV 131


>gi|163867627|ref|YP_001608826.1| hypothetical protein Btr_0370 [Bartonella tribocorum CIP 105476]
 gi|161017273|emb|CAK00831.1| hypothetical protein BT_0370 [Bartonella tribocorum CIP 105476]
          Length = 216

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 64/223 (28%), Gaps = 47/223 (21%)

Query: 9   IWEAIDRMAERHNLTPSGLARKA------GLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           I + +        L+ S L+R+        +D  + NK  +       R  S   + +I 
Sbjct: 26  ISQWLQNALSEAGLSQSELSRQLTASLGRSIDRAAVNKMLKGT-----RDISARELLEIS 80

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T  +I     +P                                   G     + +  
Sbjct: 81  KLTGASIPTNHLVPLIG------------------------------SVGAGGEIIAIDS 110

Query: 123 I-RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRTGD 179
                     +        +    SM P   +G +L  +  +       +R +IK + G 
Sbjct: 111 GCLEEVEAPPSAPKGTVAVRVVGDSMFPAIEEGSLLFYSYHLPPENLINNRAIIKTKCGK 170

Query: 180 IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           +  KVL   +      L S+N  Y        ++EW A I W 
Sbjct: 171 VYIKVLRLGKEKGKWVLSSINGKYADIV--DVELEWCAPIDWI 211


>gi|270639499|ref|ZP_06222109.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
 gi|270317366|gb|EFA28895.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
           [Haemophilus influenzae HK1212]
          Length = 87

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
                 SM P+   G  + ++   +     ++      G +  K+L +     + + S N
Sbjct: 1   MIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQVKIRSYN 60

Query: 200 -CCYPVDTVEMSDIEWIARILWAS 222
              +P +  E+ DI  + ++ W S
Sbjct: 61  TEEHPDEIAELQDISVLGKVFWYS 84


>gi|218549260|ref|YP_002383051.1| DNA polymerase V subunit UmuD [Escherichia fergusonii ATCC 35469]
 gi|218356801|emb|CAQ89429.1| DNA polymerase V, subunit D [Escherichia fergusonii ATCC 35469]
          Length = 139

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 88  KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
           K   L                FP+    + V   +    +  +    +     K    SM
Sbjct: 5   KPAELREIITLPLFSDLVPCGFPSPAA-DYVE--QRIDLNQLVIQHPSATYFVKAAGDSM 61

Query: 148 -LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
                  GD+L+++SAI  + GD ++     G+   K L  R   S+ L+ +N  Y   T
Sbjct: 62  IEAGIGDGDLLVVDSAITASHGDIVIAAVD-GEFTVKRLQLRP--SVQLVPMNSSYSPIT 118

Query: 207 VEMSD 211
           +   +
Sbjct: 119 LGSEE 123


>gi|108804740|ref|YP_644677.1| SOS-response transcriptional repressor, LexA [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765983|gb|ABG04865.1| SOS-response transcriptional repressor, LexA [Rubrobacter
           xylanophilus DSM 9941]
          Length = 209

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 53/218 (24%), Gaps = 34/218 (15%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGL--DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +I   + R+      + + +AR  GL    T+ +  K     G                 
Sbjct: 12  EILRYLARLGTDERPSVAEIARAVGLRSTQTAHHHLKLLEAGG----------------- 54

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                              +  +     +   S   G    G    G     +      S
Sbjct: 55  -------YIERGEVPAHQRRPVRLTAKGWEAVS---GAPLLGRVAAGPGIEAIVDEGGAS 104

Query: 126 PHNGIYAIQ---TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                  +     +         SM      +GD L++        G  +L   R   + 
Sbjct: 105 SLAAELLVPRPGRRRYTVTVTGDSMTGARIEEGDTLLVEENEDPPDGAVVLALLRGETVT 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K L    G  + L   N       +  S++     ++
Sbjct: 165 VKRLYRD-GDMVRLRYQNGEQREIVLPASEVRIQGEVI 201


>gi|322805231|emb|CBZ02795.1| sos-response repressor and protease LexA [Clostridium botulinum
           H04402 065]
          Length = 334

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM+      GD +++         D +      G    K L+ ++  ++
Sbjct: 245 KNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 303

Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
            LM  N  Y    +       I 
Sbjct: 304 -LMPENKRYKPIEIREEGASIIG 325


>gi|148359928|ref|YP_001251135.1| phage repressor [Legionella pneumophila str. Corby]
 gi|148281701|gb|ABQ55789.1| phage repressor [Legionella pneumophila str. Corby]
          Length = 220

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 14/221 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARK-AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               ++I   I +  +   +T   LA + A L P   +  ++       R P       +
Sbjct: 1   MDIREQIGNRITKARKELGITIKELAARTAELSPARISNWEQGT-----RSPGPLEAKLL 55

Query: 62  LAATNETICQLLDLPFSDGRT--TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
               N +   LL L  +         + +   +       +    +         +    
Sbjct: 56  ADQLNVSAAYLLCLTDNPQGDLIQNPENRFRHIPILSVKDAPHAKEILGQQEPFIFEKTI 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           + +  +P     A+         +D+SM P    GD+++++  +Q + G  +L+      
Sbjct: 116 LIDSLNPSIKSPAL----FATLVEDSSMQPELNPGDVVVVDGELQPSPGHYVLVYLTQKK 171

Query: 180 IVAKVLISRRGRS-IDLMSLNCCYPVDTV-EMSDIEWIARI 218
                           L++ +  +   ++ + +D   I  +
Sbjct: 172 QTVLRQYGEADGCLFQLLASSELWATISIKQSNDAHLIGVV 212


>gi|317505599|ref|ZP_07963508.1| SOS mutagenesis and repair protein UmuD [Prevotella salivae DSM
           15606]
 gi|315663283|gb|EFV03041.1| SOS mutagenesis and repair protein UmuD [Prevotella salivae DSM
           15606]
          Length = 200

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +T    +       +          + +  SM+      GDI+I++ + +      + + 
Sbjct: 88  DTDEQAQDVDILRMLCPNPEASFLIRVKGNSMIDAKIYDGDIIIVDKSNRSPSNHEVAVC 147

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G+   K ++ ++   + L   N  Y    V+  D   +  ++
Sbjct: 148 ELNGEYTIKHVL-QKDGRVWLYPANPDYQPIEVKECDDFSVWGVV 191


>gi|290509915|ref|ZP_06549286.1| DNA polymerase V [Klebsiella sp. 1_1_55]
 gi|289779309|gb|EFD87306.1| DNA polymerase V [Klebsiella sp. 1_1_55]
          Length = 139

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM      +GD+L+++S+     GD ++  
Sbjct: 32  DYVE--QRIDLNELLVNHPSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              G+   K L       + L  +N  Y    V   D
Sbjct: 90  VD-GEFTVKKLQLHP--RVQLNPMNPAYSPIVVGSED 123


>gi|152969991|ref|YP_001335100.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954840|gb|ABR76870.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
           complex with UmuC [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 139

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM      +GD+L+++S+     GD ++  
Sbjct: 32  DYVE--QRIDLNELLVNHPSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              G+   K L       + L  +N  Y    V   D
Sbjct: 90  VD-GEFTVKKLQLHP--RVQLNPMNPAYSPIVVGSED 123


>gi|108763097|ref|YP_632617.1| LexA repressor [Myxococcus xanthus DK 1622]
 gi|123247597|sp|Q1D406|LEXA_MYXXD RecName: Full=LexA repressor
 gi|108466977|gb|ABF92162.1| LexA repressor [Myxococcus xanthus DK 1622]
          Length = 222

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 6/108 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
             +                 +    + +  SM+      GD L +        G+ ++  
Sbjct: 105 ENMEDSVKIDSFLLGGVNGREVFALRVKGQSMIDDGIHDGDYLFVKKTPSAQPGEIVVAL 164

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
               +   K      G  I     N       V  ++      + +++
Sbjct: 165 I-EDEATVKRYYP-EGDRIRFQPANATMQPIYVSRAEFRSTMILGQVV 210


>gi|11640731|gb|AAG39348.1| RulA [Pseudomonas syringae pv. syringae]
          Length = 141

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++ +
Sbjct: 19  YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKINGDSMEGAKIFHDSLVFV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      +++ K+LI   G  + L S N  YP   +   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAAVN-NELLCKILI-LHGDHVVLKSANPAYPPRHILEGEELSIWGVV 133


>gi|253699167|ref|YP_003020356.1| SOS-response transcriptional repressor, LexA [Geobacter sp. M21]
 gi|251774017|gb|ACT16598.1| SOS-response transcriptional repressor, LexA [Geobacter sp. M21]
          Length = 258

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 29/237 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL--TPSGLARKAGL-DPTSFNKSKRFGIEGR--NRWPST 55
           MT    K++ + I   AERH    +   +A   G     +     R   +     R  + 
Sbjct: 1   MTP-KQKRVLDFIVSFAERHGFQPSQQEIASGCGFGSLGTVQHYLRALEKDGHLTRQWNA 59

Query: 56  ESIFKILAAT-------NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           +   ++              +     +      + E + +    L               
Sbjct: 60  KRGLQLANPPCPPFAKGGTRVHGQRLVSSFTPGSPELQNQPFTTLEVEQQPFAKRGTLQT 119

Query: 109 FPTGNKWNTVGV--------PEIRSPHNGIYAIQTQD-----TRHKTQDTSMLPL-YRKG 154
                    + +        P           + +         ++ +  SM+ +    G
Sbjct: 120 PAVAPIIMELPLVGIVAAGRPVQAFQLADAIEVPSAMAGPGNVVYEVRGDSMVEMGIMDG 179

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           D + ++       G  ++     G I  K  + + G SI L+  N       V   D
Sbjct: 180 DYVAVHQQAVAETGQTVI-AEVNGSITIKKYVRK-GNSIQLLPANSAMSPIAVSEDD 234


>gi|290512889|ref|ZP_06552254.1| DNA polymerase V [Klebsiella sp. 1_1_55]
 gi|289774772|gb|EFD82775.1| DNA polymerase V [Klebsiella sp. 1_1_55]
          Length = 139

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM      +GD+L+++S+     GD ++  
Sbjct: 32  DYVE--QRIDLNELLVNHPSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              G+   K L       + L  +N  Y    V   D
Sbjct: 90  VD-GEFTVKKLQLHP--RVQLNPMNPAYSPIVVGSED 123


>gi|160897980|ref|YP_001563562.1| peptidase S24/S26 domain-containing protein [Delftia acidovorans
           SPH-1]
 gi|160363564|gb|ABX35177.1| peptidase S24 and S26 domain protein [Delftia acidovorans SPH-1]
          Length = 149

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 5/109 (4%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
            +   V   E                  +    SM P +R+GD ++++  ++   GD + 
Sbjct: 29  ARSEAVEGLESLGTEVSANEASVHAFFLQLAGNSMTPEFREGDRVLIDPGVKPQPGDYVA 88

Query: 173 IKPRTGDIVAKVLI-----SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            +    + + +               +L+ LN  +PV   +   +  I 
Sbjct: 89  AQVGKTEALFRKYRLHGNDRLGNEVFELIPLNQDHPVMRSDEHGLSVIG 137


>gi|237794204|ref|YP_002861756.1| putative serine peptidase [Clostridium botulinum Ba4 str. 657]
 gi|229263980|gb|ACQ55013.1| putative serine peptidase [Clostridium botulinum Ba4 str. 657]
          Length = 527

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM+      GD +++         D +      G    K L+ ++  ++
Sbjct: 438 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 496

Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
            LM  N  Y    +       I 
Sbjct: 497 -LMPENKKYKPIEIREEGASIIG 518


>gi|323949617|gb|EGB45503.1| peptidase S24 [Escherichia coli H252]
 gi|323953758|gb|EGB49569.1| peptidase S24 [Escherichia coli H263]
          Length = 199

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 21/190 (11%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTT 83
             L    G    S ++    G    +R+ S  S+ KIL    N  +             +
Sbjct: 9   KDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILKVNENWLLNGGELNTGDSLDLS 66

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
               K +PLL    + S               + +    I S    +  I         +
Sbjct: 67  LPPIKTVPLLSLQQAASWS-------------DYMKNSSITSCVQLVGEIPANTFAVVLE 113

Query: 144 DTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
             SM           G  + ++    V  G+ +L  P+         +   G  I L+  
Sbjct: 114 SDSMSTSGGGVSIPNGSTVFVDPDRTVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPT 173

Query: 199 NCCYPVDTVE 208
           N  YP   ++
Sbjct: 174 NPRYPSIMLD 183


>gi|313139988|ref|ZP_07802181.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132498|gb|EFR50115.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 141

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 3/100 (3%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            E  S    +               SM       GD L+++S++    GD ++     G+
Sbjct: 31  EEGFSLDAHVIKHPEYTFIATVAGDSMEGAGIFHGDWLVVDSSLTPEDGDVVVAVLD-GE 89

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +  K L+SR      L + N  YP           I  ++
Sbjct: 90  LTVKRLLSR-DGRPMLHAENPRYPDFVPSEHGDVVIWGVV 128


>gi|328474040|gb|EGF44850.1| LexA repressor [Lactobacillus rhamnosus MTCC 5462]
          Length = 174

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 48/187 (25%), Gaps = 28/187 (14%)

Query: 7   KKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           K+I + I    E H   P+   + +  GL  +S                   ++   L  
Sbjct: 11  KQILQTIYEAIEDHGYPPTVREIGKSVGLSSSS-------------------TVAAYLEK 51

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                     L   D       E     L F    + G    G    G     +   +  
Sbjct: 52  LL-----AAGLIAKDPSKPRTIEVTAAGLDFIGVQAQGIPIVGTVAAGVPITAIENIDDY 106

Query: 125 SPHNGIYAIQTQ-DTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            P               + Q +SM+ +    GD +I+        G  ++      +   
Sbjct: 107 FPVPDDLPYSADELFMLRVQGSSMIKIGILDGDQIIVKKQNDAENGQIVVAMTEEDEATV 166

Query: 183 KVLISRR 189
           K     +
Sbjct: 167 KRFYKEK 173


>gi|163803931|ref|ZP_02197765.1| repressor protein c2 [Vibrio sp. AND4]
 gi|159172268|gb|EDP57162.1| repressor protein c2 [Vibrio sp. AND4]
          Length = 226

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 16/197 (8%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
             ++ ++ +R  I     WP  +   K+   +  +  +            +   +     
Sbjct: 32  SSSTLSRIERGAI---PSWPIVDGFCKLFGWS-LSDLERKLGRTVSNEKPQVSTESPRKR 87

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY--AIQTQDTRHKTQDTSMLP-- 149
           +   +             G  W      E  +         +            SM    
Sbjct: 88  HVSSAIGREIPIVSWVNAG-GWAESPCIESYNQEKQFVTGKMPKNTFGLVVSGNSMENCE 146

Query: 150 ---LYRKGDILILNSAIQVNCGDRLLIKP-RTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
               +  G ++++N  I+   GD ++     T +   K L+   G+   L+ LN  Y V 
Sbjct: 147 MKETFPNGSLILVNPDIEPEIGDYVVAVDEVTQEATFKQLLEDCGKK-MLVPLNSQYQVM 205

Query: 206 TVEMSDIEWIARILWAS 222
            V   +   I  +++ S
Sbjct: 206 NVT--ETTMIKGVVFRS 220


>gi|28198903|ref|NP_779217.1| phage-related repressor protein [Xylella fastidiosa Temecula1]
 gi|28057001|gb|AAO28866.1| phage-related repressor protein [Xylella fastidiosa Temecula1]
          Length = 229

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 65/211 (30%), Gaps = 10/211 (4%)

Query: 12  AIDRMAERHNLTPSG-LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           A+  ++++        +A K G D +  ++      +   +    +    ++ A  +   
Sbjct: 15  ALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMFELLVRAYPDAFK 74

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN-G 129
           ++  +  +     +     +  +        G  +  +       N+V  P        G
Sbjct: 75  EIATMSRALDNREDTNYVRVQHIEAEAHMGPGRINEDL---PEVINSVEFPPNYIRSLIG 131

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +         SM P    G+ +++++      GD L +         K L  R 
Sbjct: 132 FLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLVNTGSGQQIKALHER- 190

Query: 190 GRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218
              I + S++   YP       +   I  R+
Sbjct: 191 NGYIYITSMDKDLYPDFV--ADENTIIGGRV 219


>gi|217966469|ref|YP_002351975.1| SOS-response transcriptional repressor, LexA [Dictyoglomus turgidum
           DSM 6724]
 gi|217335568|gb|ACK41361.1| SOS-response transcriptional repressor, LexA [Dictyoglomus turgidum
           DSM 6724]
          Length = 199

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 8/172 (4%)

Query: 51  RWPSTESIFKILA-ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           R P+   + K L   ++ +    +      G  ++ K+    L              G  
Sbjct: 26  RIPTVREVSKALGLNSSGSGYFHMKALVEKGYLSQDKKGRFYLRNLINEEIIYLPLVGTI 85

Query: 110 PTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNC 167
             G    +    +   P    +  I  +    K +  SM       GD++I+        
Sbjct: 86  KAGIPVESPEYVDEYIPVPKSFVKIPEKSFLLKVKGDSMEGAHILDGDLIIVQKQDIAQK 145

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G+ ++     G+   K L S       L   N  Y          + I +++
Sbjct: 146 GEIVVALKD-GESTVKFL-SENYGIPCLKPANPRYSEIYPP---FKIIGKVI 192


>gi|220926724|ref|YP_002502026.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219951331|gb|ACL61723.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 245

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 29/235 (12%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T  +  +    I    E+  LT   LA   G      ++ +       +R  S +++ KI
Sbjct: 7   TRLTPAEKPNRIAEWREKRGLTLEALAEATGFSTGYLSRMQNG-----SRNVSLKNLAKI 61

Query: 62  LAATNETICQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
             A    +  L+                    ++        G F           + + 
Sbjct: 62  SEALKVPVADLVPEGEEVPPGGEASPIPLPKGMVRVIGIAKAGLFREVESLAYFVHDPIP 121

Query: 120 -VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL----YRKGDILIL----NSAIQVNCGDR 170
             P+   PH   +A          +  SM          G   I     +  I +  G +
Sbjct: 122 AYPDTEFPHARQFA-------VLVEGDSMNAATPVPIPDGAKCICVDFDDINIPLRSGMK 174

Query: 171 LLIKPRTG-----DIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++++         +   K +     R      S +  +    V         R++
Sbjct: 175 VVVEQIRDGGHLREWSVKEVKLFADRVEYHPRSTSREFKPIVVPKDATADTGRVV 229


>gi|168182757|ref|ZP_02617421.1| LexA repressor [Clostridium botulinum Bf]
 gi|182674020|gb|EDT85981.1| LexA repressor [Clostridium botulinum Bf]
          Length = 527

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM+      GD +++         D +      G    K L+ ++  ++
Sbjct: 438 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 496

Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
            LM  N  Y    +       I 
Sbjct: 497 -LMPENKKYKPIEIREEGASIIG 518


>gi|54298316|ref|YP_124685.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris]
 gi|53752101|emb|CAH13528.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris]
          Length = 220

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 14/221 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARK-AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               ++I   I +  +   +T   LA + A L P   +  ++       R P       +
Sbjct: 1   MDIREQIGNRITKARKELGITIKELAERTAELSPARISNWEQGT-----RSPGPMEAKLL 55

Query: 62  LAATNETICQLLDLPFSDGRT--TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
               N +   LL L  +         + K   +       +    +         +    
Sbjct: 56  ADQLNVSAAYLLCLTDNPQGDLIQNPENKFRHIPLLSMKDAIHAKEILGQQEPFIFEKTI 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTG 178
           + +  +P     A+         +D+SM P    GD+++++  +Q + G  + +   +  
Sbjct: 116 LIDSLNPSIKSPAL----FATLVEDSSMQPELNPGDVVVVDGELQSSPGHYVLVYLTQKK 171

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
             V +      G    L++ +  +   ++ + +D   I  +
Sbjct: 172 QTVLRRFGEADGCLFQLLASSELWATISIKQSNDAHLIGVV 212


>gi|239815691|ref|YP_002944601.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802268|gb|ACS19335.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 222

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 58/222 (26%), Gaps = 31/222 (13%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET--------ICQLL 73
           +T       +G+  ++ +K +R       R  +  ++ +                     
Sbjct: 1   MTQKQAEAASGVKQSNISKIERGDTG---RSMALLALARTYRVDPNWLDTGDGPAPWDPP 57

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--------TGNKWNTVGVPEIRS 125
               +    +E           P   S      G  P        +        +   R 
Sbjct: 58  QPGTARDNASEPPGAYRVTRTPPSGPSFNPGTPGTVPLIAWTQVASWKGAAQGTIQAERW 117

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP------LYRKGDILILNSAIQ-VNCGDRLLIKPR-T 177
                +         + +  SM         Y    I+ +++       G+R++ +   +
Sbjct: 118 LPCVAHHSPGNTYALRVRGDSMTAPSGHLKSYPAESIIFVDTQRTTPEDGERIIARLDAS 177

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++  KV   +      L+ LN  +       S    +  ++
Sbjct: 178 NEVTFKVF-KQEDGRRWLLPLNPKHEPI---RSAFTVLGTVV 215


>gi|78212710|ref|YP_381489.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CC9605]
 gi|78197169|gb|ABB34934.1| putative SOS mutagenesis protein UmuD [Synechococcus sp. CC9605]
          Length = 143

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V V      +  +    T          SM       GD+L+++ ++    G  ++
Sbjct: 34  ADDYVDV--GIDLNEQLIRHPTSTFFLHVSGESMTDAGIHDGDLLVVDRSLDPRPGQVVV 91

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G    K L+  R   + L + +  YP   +    +++ 
Sbjct: 92  AVLD-GAFTLKRLMHHR-GRLRLEAAHPDYPPLELHRCGEVQI 132


>gi|156147187|gb|ABU53768.1| cje0215 [Campylobacter phage CGC-2007]
          Length = 111

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           I       +    +         SM PL + G I +++           +       +  
Sbjct: 11  IMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-INTRDGLFI 69

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 70  KQVLKQDDGVI-LHSLNPLYEDIFYKNGDFLLIGVVI 105


>gi|182681608|ref|YP_001829768.1| putative phage repressor [Xylella fastidiosa M23]
 gi|182631718|gb|ACB92494.1| putative phage repressor [Xylella fastidiosa M23]
 gi|307580043|gb|ADN64012.1| phage-related repressor protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 224

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 65/211 (30%), Gaps = 10/211 (4%)

Query: 12  AIDRMAERHNLTPSG-LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           A+  ++++        +A K G D +  ++      +   +    +    ++ A  +   
Sbjct: 10  ALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMFELLVRAYPDAFK 69

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN-G 129
           ++  +  +     +     +  +        G  +  +       N+V  P        G
Sbjct: 70  EIATMSRALDNREDTNYVRVQHIEAEAHMGPGRINEDL---PEVINSVEFPPNYIRSLIG 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +         SM P    G+ +++++      GD L +         K L  R 
Sbjct: 127 FLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLVNTGSGQQIKALHER- 185

Query: 190 GRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218
              I + S++   YP       +   I  R+
Sbjct: 186 NGYIYITSMDKDLYPDFV--ADENTIIGGRV 214


>gi|257897429|ref|ZP_05677082.1| repressor [Enterococcus faecium Com12]
 gi|257833994|gb|EEV60415.1| repressor [Enterococcus faecium Com12]
          Length = 169

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193
            +    K +  SM+P       +++     V  G+   +I     +   K +       +
Sbjct: 78  GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 136

Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222
            LM  N  Y    ++ ++    + + +  S
Sbjct: 137 MLMPDNNDYHPYIIDENNPARILGKAVKVS 166


>gi|315637232|ref|ZP_07892451.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315478396|gb|EFU69110.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 215

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 59/196 (30%), Gaps = 16/196 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
             +A+   +    F K+K++      R P  E +  +            +          
Sbjct: 27  KDIAQALNISYDVFRKAKQYN-----RVPYWEIMQFLAKRNISINWFFFNQLPESLIENT 81

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--RHKT 142
                +         +GG   +        +     P I       Y           + 
Sbjct: 82  SNYIILKYQKNIIGSAGGGAIN--------YEINPEPLIIDKQILDYINSNYKYTEVLQA 133

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P  + G ++ ++ + +      + +     +I  K +I +   +I L S+N  +
Sbjct: 134 FGESMEPDIKDGSLIFVDKSKKDINKKGIFVVSAKDEIYIK-IIKQEQSNILLQSINEEF 192

Query: 203 PVDTVEMSDIEWIARI 218
                 + +I+ I ++
Sbjct: 193 NNIRFNIDEIDIIGKV 208


>gi|300925164|ref|ZP_07141074.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
 gi|300418694|gb|EFK02005.1| peptidase S24-like domain protein [Escherichia coli MS 182-1]
          Length = 79

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           P +  G +++++    V  GD  + +    +   K LI   G+   L  LN  YP+    
Sbjct: 1   PSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN 59

Query: 209 MSDIEWIARILWASQ 223
                 + +++ ASQ
Sbjct: 60  -DSCSVVGKVI-ASQ 72


>gi|291617316|ref|YP_003520058.1| UmuD [Pantoea ananatis LMG 20103]
 gi|291152346|gb|ADD76930.1| UmuD [Pantoea ananatis LMG 20103]
 gi|327393763|dbj|BAK11185.1| SOS-response transcriptional repressor UmuD [Pantoea ananatis
           AJ13355]
          Length = 145

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  I    +     +    SM       GD+L+++SA++ + GD ++  
Sbjct: 38  DYVE--QRIDLNKLIVQHPSSTYFVRVSGESMTGAGINDGDMLVVDSALRASHGDIVV-A 94

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
              G+   K L  +    + LM +N  +    +   D +E    +
Sbjct: 95  SVEGEFTVKRLQLQP--CLQLMPMNRQFKPIAISTEDALEVFGVV 137


>gi|224535599|ref|ZP_03676138.1| hypothetical protein BACCELL_00463 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522790|gb|EEF91895.1| hypothetical protein BACCELL_00463 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 214

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +   ++ S   +  G+   SF +S +    G       E+I +I    N  
Sbjct: 2   ILQRIKEYIDLKGISISAFEKSIGMSNASFGRSLK--NNGAIGTDKLENILRIYQEINPD 59

Query: 69  I----CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                   +    S         ++  +           F               +P   
Sbjct: 60  WLLTGQGNMVRSGSKITLPPPVTEKKGIPLISYQTLPTLFTGKKGTFSQATEYFSLP--- 116

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDIV 181
                       D     +D SM P Y+ GDI+              +++ +       +
Sbjct: 117 -------LFNEADFLIPVKDNSMAPQYKGGDIIACKCLSNEGLFFQWNKIYLLLTPQGAL 169

Query: 182 AKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K +   +    + L+S +  YP   +  S I  +A +L
Sbjct: 170 IKRIHPGKDEEHLTLVSDHTDYPPFQLHRSLIGNVALVL 208


>gi|330886052|gb|EGH19953.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 141

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM        +++++
Sbjct: 19  YTFKIPAGFPNPAA-DYIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDNLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133


>gi|241763576|ref|ZP_04761627.1| putative phage repressor [Acidovorax delafieldii 2AN]
 gi|241367169|gb|EER61523.1| putative phage repressor [Acidovorax delafieldii 2AN]
          Length = 201

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKP 175
            + + E                       SM P +  GDIL++++        D + +  
Sbjct: 88  QIALSEQWVARRLQPTKLNALRFIHAYGDSMSPTFEDGDILLVDTGIKDPKIIDGVYVMA 147

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD--IEWIARILW 220
               +  K +  R    +++ S N       V   D  I+ + R++W
Sbjct: 148 ANDRVYIKRVRQRMDGVVEISSDNATVKTVDVLNGDHRIDILGRVVW 194


>gi|313201787|ref|YP_004040445.1| lexa repressor [Methylovorus sp. MP688]
 gi|312441103|gb|ADQ85209.1| LexA repressor [Methylovorus sp. MP688]
          Length = 192

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              +  S  + +    +Q      +  SM+       D++I+      N GD ++     
Sbjct: 87  DRHDTLSIDDYLIERPSQTVLITVKGDSMIDAGIVPDDVVIVEKRQVANVGDIVVAIVD- 145

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K L   +G+   L+  N  YPV      ++E    ++
Sbjct: 146 NEFTLKTLGREKGQ-FVLLPANKAYPVIR-PQGNLEIFGVVV 185


>gi|321156976|emb|CBW38965.1| Putative phage repressor protein [Streptococcus phage V22]
          Length = 262

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 68/262 (25%), Gaps = 57/262 (21%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG--IEGRNRWPSTESIFKILAAT 65
           K+ E +      H L+       + L     +  ++       +   PS ++I KI    
Sbjct: 2   KLGELLKSYRTEHKLSMDAFCELSDLTKGYISMLEKNEHPKSKKPIVPSYDTIEKIAKGM 61

Query: 66  NETICQLLDLPFSDGR-------------------TTEKKEKEIPLLYFPPSGSGGFFDS 106
             +   L+D+   D                        +  ++  +L +         + 
Sbjct: 62  QISTEDLIDMLDDDQEIQINATPALLSKSPIQTIYDELEPPRQGKVLNYAKRQLKEQRNE 121

Query: 107 GVFPTGNKWNTV----------------------------GVPEIRSPHNGIYAIQTQDT 138
                      +                             +    S +           
Sbjct: 122 EETKINEVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYDAI 181

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                  SM P  + GD L + +  QV+     + +   G    K L  +      L SL
Sbjct: 182 A-YVVGNSMEPKIKNGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLESL 234

Query: 199 NCCYPVDTVEMS-DIEWIARIL 219
           N  Y    ++ S DI  I  ++
Sbjct: 235 NPDYEDIHLDESNDIRTIGEVV 256


>gi|153930906|ref|YP_001383283.1| putative LexA repressor [Clostridium botulinum A str. ATCC 19397]
 gi|153936900|ref|YP_001386831.1| putative LexA repressor [Clostridium botulinum A str. Hall]
 gi|152926950|gb|ABS32450.1| LexA repressor [Clostridium botulinum A str. ATCC 19397]
 gi|152932814|gb|ABS38313.1| LexA repressor [Clostridium botulinum A str. Hall]
          Length = 535

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM+      GD +++         D + +    G    K L+ ++  ++
Sbjct: 446 KNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIVAVNLD-GSATLKRLLIKKSGAV 504

Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
            LM  N  Y    +       I 
Sbjct: 505 -LMPENKKYKPIEILEEGASIIG 526


>gi|15838259|ref|NP_298947.1| phage-related repressor protein [Xylella fastidiosa 9a5c]
 gi|9106718|gb|AAF84467.1|AE003992_3 phage-related repressor protein [Xylella fastidiosa 9a5c]
          Length = 231

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 63/211 (29%), Gaps = 10/211 (4%)

Query: 12  AIDRMAERHNLTPSG-LARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           A+  ++++        +A K G D +  ++      +   +    + +  ++ A  +   
Sbjct: 17  ALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMLELLVRAYPDAFK 76

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNG 129
           ++  +              +  +        G  +          N+V   P       G
Sbjct: 77  EIATMSRVLDNREATNYVRVQHIEAEAHMGPGRINEDF---PEVVNSVEFTPNYIRSLIG 133

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                 +         SM P    G+ +++++      GD L +         K L  R 
Sbjct: 134 FVPPPGRLKLITGTGDSMSPKILPGETVLVDTGCNTFVGDGLYLINTGSGQQIKALHER- 192

Query: 190 GRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218
              I + S++   YP       +   I  R+
Sbjct: 193 NGYIYVTSMDKALYPDFV--ADENTIIGGRV 221


>gi|86139840|ref|ZP_01058406.1| umuD protein [Roseobacter sp. MED193]
 gi|85823469|gb|EAQ43678.1| umuD protein [Roseobacter sp. MED193]
          Length = 140

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              +      +  +          +    SM       GDIL+++ +I    GD ++I  
Sbjct: 29  EDHLEGKLDLNQHLIRRPAATFFVRASGESMRDAGIFDGDILVIDRSITPVAGD-VVIAV 87

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             GD+  K L+        L + N  +P   V+    E    +
Sbjct: 88  LHGDLTVKRLMKAGPEGWALQAENAAFPNIPVDEEGCEIWGVV 130


>gi|330830155|ref|YP_004393107.1| peptidase S24-like domain-containing protein [Aeromonas veronii
           B565]
 gi|328805291|gb|AEB50490.1| Peptidase S24-like domain protein [Aeromonas veronii B565]
          Length = 120

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +    A        +    SM+    R GD+L+++ + +   G  ++     G+   
Sbjct: 17  IDLNQLCVAHPAATYFVRAAGDSMVDHGIRDGDLLVVDRSRKARHGSVVIAAVD-GEFTV 75

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
           K L      ++ L+  N  Y      E  ++E    +
Sbjct: 76  KKLQLAP--TVALLPGNPAYRPIHFNEGQELEIFGVV 110


>gi|322508840|gb|ADX04294.1| Transciptional regulator [Acinetobacter baumannii 1656-2]
          Length = 251

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 29/238 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K++ EA+D MA         LA K  +   +  K            P    +  I     
Sbjct: 10  KRLNEALDEMAIPVRGRAVLLASKFEVSAKAAGKWLNGESI-----PEMTKLIDIALWLG 64

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-------GSGGFFDSGVFPTGNKWNTVG 119
           + +  LL            +  ++ +L +           +  F+D      G  +  + 
Sbjct: 65  KGVEWLLTGSERSTLKENGRITDLEILTYEDGDPIPDGYMAIDFYDDVYASAGGGYLNIE 124

Query: 120 VP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
            P         +                    SM+P    G  + ++++ +      +  
Sbjct: 125 QPSAVKMLFPINELRKYDVKPEYAKVFIVDGESMVPDLYPGQRISIDTSAKKIYDGEIYA 184

Query: 174 KPRTGDIVAKVLI---SRRGRSIDLMSLNCC--------YPVDTVEMSDIEWIARILW 220
             +  ++  K+L             +S N          Y    +E  +I+ + +  W
Sbjct: 185 FLKGDELKVKILFDWDEMGKGGFKAVSRNPDKVRFPDEYYSPARIEADNIQIVGQYWW 242


>gi|254425161|ref|ZP_05038879.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335]
 gi|196192650|gb|EDX87614.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335]
          Length = 156

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +   +    +  +          +    SM P     GD+LI++ +I+   G  ++
Sbjct: 43  ADDYIE--KTLDLNAHLIENPAATFFARACGDSMEPGGIFDGDLLIIDRSIEPRNGRVVV 100

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
           +    G+++ K L +   R++ L + N  YP   V
Sbjct: 101 VALN-GEMLVKRLHTTLDRTV-LSADNRNYPPIEV 133


>gi|224282829|ref|ZP_03646151.1| putative prophage repressor [Bifidobacterium bifidum NCIMB 41171]
          Length = 102

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                       SM       GD L+++S++    GD ++     G++  K L+SR    
Sbjct: 5   PEYTFIATVAGDSMEGAGIFHGDWLVVDSSLTPEDGDVVVAVLD-GELTVKRLLSR-DGR 62

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
             L + N  YP           I  ++
Sbjct: 63  PMLHAENPRYPDFVPSEHGDVVIWGVV 89


>gi|87310842|ref|ZP_01092968.1| LexA protein [Blastopirellula marina DSM 3645]
 gi|87286357|gb|EAQ78265.1| LexA protein [Blastopirellula marina DSM 3645]
          Length = 206

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 4/124 (3%)

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
                   L    +   G    G    G     +   E+    +     +        + 
Sbjct: 69  PNMSRAIQLTCDEADEVGLPLVGQIAAGVLHEAIEQKELIDFRDMF--ARHDQFVLAVKG 126

Query: 145 TSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
            SM       GD +++      + G  ++ +   G+   K     +   I L   N    
Sbjct: 127 DSMIEAHIEDGDYVVVRKQDSASLGQIVVAETDDGEATLKYWFPEKN-RIRLQPANSSMD 185

Query: 204 VDTV 207
              V
Sbjct: 186 PIYV 189


>gi|283833032|ref|ZP_06352773.1| UmuD protein [Citrobacter youngae ATCC 29220]
 gi|291070649|gb|EFE08758.1| UmuD protein [Citrobacter youngae ATCC 29220]
          Length = 139

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +   +    ++ +    +     K+   SM+      GD+LI++SA     GD ++  
Sbjct: 32  DYIE--KRIDLNDLLVQHPSATYFVKSSGDSMVGAGIGDGDLLIVDSARNPAHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
              G+   K L       + L   N  Y    +   D ++    +
Sbjct: 90  I-EGEFTVKRLQVHP--VVMLKPENSAYAPIIIGSEDALDIFGVV 131


>gi|307608950|emb|CBW98359.1| hypothetical protein LPW_02131 [Legionella pneumophila 130b]
          Length = 213

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 16/197 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   +   + E + ++   H  ++ S LAR  G+   + +       +   R  + E + 
Sbjct: 1   MADMT---LSENLQQLMRIHGNISVSELARLTGIPQPTIHHILAGSTK-NPRKKALEELS 56

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +  + +       L              KE   +   P            P+G       
Sbjct: 57  RYFSVS----IDELIGQEPLPAVIPDAVKENLQISTIPVIKWESLKEW--PSGTARTQDT 110

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              +         I          DTSM PL+++  +LI +S    N  D +++      
Sbjct: 111 QEILIDK-----KIDKNSFALIMPDTSMEPLFQQNSLLIFDSGKTPNDRDFVIVHLSKEG 165

Query: 180 IVAKVLISRRGRSIDLM 196
           I+A   +     +  L 
Sbjct: 166 IIAFNRLFIENNTFYLR 182


>gi|257900262|ref|ZP_05679915.1| repressor [Enterococcus faecium Com15]
 gi|257838174|gb|EEV63248.1| repressor [Enterococcus faecium Com15]
          Length = 169

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193
            +    K +  SM+P       +++     V  G+   +I     +   K +       +
Sbjct: 78  GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 136

Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222
            LM  N  Y    ++ ++    + + +  S
Sbjct: 137 MLMPDNNDYHPYIIDENNPARILGKAVKVS 166


>gi|321157243|emb|CBW39227.1| Putative phage repressor protein [Streptococcus phage 8140]
          Length = 267

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 65/258 (25%), Gaps = 51/258 (19%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN---------- 50
           M  FS       ++ +    N   + L+R  G+ P++     +                 
Sbjct: 16  MKVFS-----ANLNSILSDRNCKQAELSRATGIPPSTLTGYVKGTSLPIPGNVQKIADFF 70

Query: 51  --------------------RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90
                                  +T SI  I           +          + KE+  
Sbjct: 71  GVPKSVLDPRFVTNNSMVDDSSSNTSSIQTIYDQLEPPRQGKVLTFAERQLKEQNKEETK 130

Query: 91  PLLYFPPSGSGGFFDSGVF-------PTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
                        +    +         G+       +    S +               
Sbjct: 131 INEVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYDAIA-YV 189

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P  + GD L + +  QV+     + +   G    K L  +      L SLN  Y
Sbjct: 190 VGNSMEPKIKNGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDY 243

Query: 203 PVDTVEMS-DIEWIARIL 219
               ++ S DI  I  ++
Sbjct: 244 EDIHLDESNDIRTIGEVV 261


>gi|126641627|ref|YP_001084611.1| Cro/CI family transcriptional regulator [Acinetobacter baumannii
           ATCC 17978]
          Length = 199

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/198 (9%), Positives = 59/198 (29%), Gaps = 20/198 (10%)

Query: 29  RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88
           R  G    + +   +  +         +S+ ++L  T   +        +          
Sbjct: 2   RGTGAGKATVSSWIKGAVN--PSATYIDSLAQVLKTTPTWLLTGQINDTASNMDNNVDIN 59

Query: 89  EIPLLYFPPSGSG---GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
            +  + + P  S    G +         +   + +               +    + +  
Sbjct: 60  SMASVIYAPVLSWVQAGNWTDMDAVNIQECEKLPLVPGAG---------KKSFYLEVKGL 110

Query: 146 SMLPLYRKGDILILNSA---IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
           S  P + +G+ + ++       +  G+ ++++    +   K L++       L  LN  +
Sbjct: 111 SNAPYFEEGEKICIDPDYVLEDIQTGEMVVVRC-GNEATFKALVAEPNG-YYLKPLNPNW 168

Query: 203 PVDTVEM-SDIEWIARIL 219
               + +  D   + + +
Sbjct: 169 SEQIIPLKEDCILVGKYV 186


>gi|308187214|ref|YP_003931345.1| 26 kDa repressor protein (Regulatory protein CI) [Pantoea vagans
           C9-1]
 gi|308057724|gb|ADO09896.1| 26 kDa repressor protein (Regulatory protein CI) [Pantoea vagans
           C9-1]
          Length = 144

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +   ++      + +      QT       +  SM      GD++ ++ ++    GD + 
Sbjct: 25  DVIRSIEYNADHARNFFGGKPQTTVKMVNVRGDSMSGTIEPGDLIFVDVSVTQFDGDGIY 84

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE---MSDIEWIARILWASQ 223
           +    G I  K L       I ++S N  Y    ++           +++  SQ
Sbjct: 85  VFGFDGKIHIKRLQIVPD-KIVVISDNTRYRDWFIDETNEHRFYIFGKVM-ISQ 136


>gi|260565880|ref|ZP_05836352.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|260151001|gb|EEW86107.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
          Length = 85

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           P +  G +++++    V  GD  + +    +   K LI   G+   L  LN  YP+    
Sbjct: 7   PSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN 65

Query: 209 MSDIEWIARILWASQ 223
                 + +++ ASQ
Sbjct: 66  -ESCSVVGKVI-ASQ 78


>gi|11640727|gb|AAG39346.1| RulA [Pseudomonas syringae pv. syringae]
          Length = 141

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++++
Sbjct: 19  CTFKIPAGFPNPAA-DHIEQDFSYDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + + K+LI + G  + L S N  YP   V   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRQVLEGEELSIWGVV 133


>gi|88608081|ref|YP_506392.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama]
 gi|88600250|gb|ABD45718.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama]
          Length = 194

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 64/214 (29%), Gaps = 37/214 (17%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I +  E   +    LA +AG+  +           G+++ P+++ +  I      +    
Sbjct: 5   IRKRMEEIGINARELAERAGVGKSFVYDILN----GKSKNPTSKKLNSISRELGIS---- 56

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPEIRSPHNGI 130
                              + Y               P  +  N   V     R+     
Sbjct: 57  -------------------ISYLINVSPDSIDYENYLPVHSLDNQLGVSFLFNRTFCEEH 97

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD----RLLIKPRTGDIVAKVLI 186
            +  ++       D SMLP     +ILI+    +   GD     + +     + + + + 
Sbjct: 98  ISETSKLYSCTMYDDSMLPSIMPNEILII---KKFIQGDRMKSGVFLIRDKFNSIVRSVE 154

Query: 187 SR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                + + +   N  Y        +I+ I +++
Sbjct: 155 HIFGSQDVKITPDNEKYSTYIKHFDEIDIIGKVI 188


>gi|256962518|ref|ZP_05566689.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256953014|gb|EEU69646.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|323481895|gb|ADX81330.1| LexA-like bifunctiol S24 family peptidase/transcriptiol regulator
           protein [Enterococcus phage EF62phi]
          Length = 244

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 68/218 (31%), Gaps = 29/218 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I ++A+  N+ P  L   +  D    ++      +         S  K+    +    
Sbjct: 46  ENIIKIADGLNMKPEDLLNLSNEDSDIISRITTILNQ-------LTSDRKLAVLNSAMQQ 98

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                   +   +   +K + L     +G G        P      T+ +PE   P +  
Sbjct: 99  LKEQKQEKNNVISLPVKKSVNLYGIMTAGYGTINYDKCQP----IETIEIPENDIPKDYD 154

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
            A        +    SM P Y  G I+ +    ++  G         G+   K +   + 
Sbjct: 155 LA-------FRVSGDSMYPTYEDGQIIFVRKQSEIEQGMIG-CVEINGNAFIKRIYKEKD 206

Query: 191 RSIDLMSLNCC--------YPV-DTVEMSDIEWIARIL 219
             +  +S N          +P   T E  +I  I +++
Sbjct: 207 -RLRFVSFNTDVDKDGNRLFPDFYTSETDEIYIIGKVV 243


>gi|253999814|ref|YP_003051877.1| LexA repressor [Methylovorus sp. SIP3-4]
 gi|253986493|gb|ACT51350.1| LexA repressor [Methylovorus sp. SIP3-4]
          Length = 196

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              +  S  + +    +Q      +  SM+       D++I+      N GD ++     
Sbjct: 91  DRHDTLSIDDYLIERPSQTVLITVKGDSMIDAGIVPDDVVIVEKRQVANVGDIVVAIVD- 149

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +   K L   +G+   L+  N  YPV      ++E    ++
Sbjct: 150 NEFTLKTLGREKGQ-FVLLPANKAYPVIR-PQGNLEIFGVVV 189


>gi|330974080|gb|EGH74146.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 141

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 8/122 (6%)

Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
               +   P G      + +           + A        K    SM         ++
Sbjct: 16  IPCYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +++ + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  
Sbjct: 74  VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131

Query: 218 IL 219
           ++
Sbjct: 132 VV 133


>gi|15602282|ref|NP_245354.1| hypothetical protein PM0417 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720669|gb|AAK02501.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 216

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
               G      +         SMLP    GD+L++N  +     + + +      +  K 
Sbjct: 112 DWLTGRGITADKLVFVSATGDSMLPTIHHGDLLLINREVNSAKEEGIYVIRSGKQVWIKR 171

Query: 185 LISRRGRSIDLMSLNCC-YPVDTVEMSD---IEWIARIL 219
           +       I LMS N   YP   +       +E I +++
Sbjct: 172 IQGLPNG-IRLMSDNKTLYPPIDLSFEQYHALEIIGKVI 209


>gi|303255702|ref|ZP_07341749.1| hypothetical protein CGSSpBS455_09407 [Streptococcus pneumoniae
           BS455]
 gi|302597374|gb|EFL64473.1| hypothetical protein CGSSpBS455_09407 [Streptococcus pneumoniae
           BS455]
 gi|321157093|emb|CBW39080.1| Putative phage repressor protein [Streptococcus phage 34117]
          Length = 268

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 62/264 (23%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  FS       ++ +    N   + L+R  G+ P++     +         P   ++ K
Sbjct: 16  MKVFS-----ANLNSILSDRNCKQAELSRATGIPPSTLTGYVKGTS-----LPIPGNVQK 65

Query: 61  ILAATNETICQLLDLPFSDGRTTEK----------------KEKEIPLLYFPPSGSGGFF 104
           I          L     ++    +                   ++  +L +         
Sbjct: 66  IADFFGVPKSVLDPRFVTNNSMVDDSSSNTSSIQTIYDQLEPPRQGKVLNYAKRQLKEQR 125

Query: 105 DSGVFPTGNKWNTV----------------------------GVPEIRSPHNGIYAIQTQ 136
           +            +                             +    S +         
Sbjct: 126 NEEETKINEVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYD 185

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                    SM P  + GD L + +  QV+     + +   G    K L  +      L 
Sbjct: 186 AIA-YVVGNSMEPKIKNGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLE 238

Query: 197 SLNCCYPVDTVEMS-DIEWIARIL 219
           SLN  Y    ++ S DI  I  ++
Sbjct: 239 SLNPDYEDIHLDESNDIRTIGEVV 262


>gi|257485801|ref|ZP_05639842.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|302130256|ref|ZP_07256246.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331012897|gb|EGH92953.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 141

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
             F +   P G      + +           + A        K    SM         ++
Sbjct: 16  IPFYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +++ + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  
Sbjct: 74  VVDRSRKPSSGSIVIAAVN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131

Query: 218 IL 219
           ++
Sbjct: 132 VV 133


>gi|152987517|ref|YP_001345496.1| protein MucA [Pseudomonas aeruginosa PA7]
 gi|150962675|gb|ABR84700.1| protein MucA [Pseudomonas aeruginosa PA7]
          Length = 147

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 6/107 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172
             + +      S               +    SM       GDIL+++ +I    G  ++
Sbjct: 35  AEDHIE--ASLSLDELCVVHPAATFFLRVVGDSMTGLGIFDGDILVVDRSITPRAGMVVV 92

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
                G+   K L      +  L + N  YP   + +  D+E    +
Sbjct: 93  AVVN-GEFTCKQLAY-EHGAPVLRAANKAYPDIRLRDGEDLEVFGVV 137


>gi|325913376|ref|ZP_08175743.1| LexA repressor family protein [Lactobacillus iners UPII 60-B]
 gi|325477302|gb|EGC80447.1| LexA repressor family protein [Lactobacillus iners UPII 60-B]
          Length = 157

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 7/124 (5%)

Query: 88  KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
               ++   P          +    N  + +        +             KT+  SM
Sbjct: 24  NTDTVVKQIPLLGDIACGDPITADENIEDYIP-----ETYTRGNVPSGTLFALKTKGHSM 78

Query: 148 LPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
            P    G I+I+     V  G+   ++         K +      ++ L   N  Y    
Sbjct: 79  EPTIPDGSIVIIRQQPNVEDGEIAAVLVDDDARATLKRI-KHSNDAVILQPDNREYDPIV 137

Query: 207 VEMS 210
           +  +
Sbjct: 138 LTPN 141


>gi|257886429|ref|ZP_05666082.1| prophage pi1 protein 03 [Enterococcus faecium 1,231,501]
 gi|257822285|gb|EEV49415.1| prophage pi1 protein 03 [Enterococcus faecium 1,231,501]
          Length = 167

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193
            +    K +  SM+P       +++     V  G+   +I     +   K +       +
Sbjct: 76  GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 134

Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222
            LM  N  Y    ++ ++    + + +  S
Sbjct: 135 MLMPDNNDYHPYIIDENNPARILGKAVKVS 164


>gi|260844567|ref|YP_003222345.1| putative repressor protein [Escherichia coli O103:H2 str. 12009]
 gi|257759714|dbj|BAI31211.1| putative repressor protein [Escherichia coli O103:H2 str. 12009]
          Length = 199

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 21/190 (11%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTT 83
             L    G    S ++    G    +R+ S  S+ KIL    N  +             +
Sbjct: 9   KDLVNATGASKGSVSQWINGGGAPSSRYIS--SLAKILKVNENWLLNGGELNTGDSLDLS 66

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
               K +PLL    + S               + +    I S    +  I         +
Sbjct: 67  LPPIKTVPLLSLQQAASWS-------------DYMKNSSITSCVQLVGEIPANTFAVVLE 113

Query: 144 DTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
             SM           G  + ++    V  G+ +L  P+         +   G  I L+  
Sbjct: 114 SDSMSTSGGGVSIPNGSTVFVDPNRTVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPT 173

Query: 199 NCCYPVDTVE 208
           N  YP   ++
Sbjct: 174 NPRYPSIMLD 183


>gi|229528417|ref|ZP_04417808.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae 12129(1)]
 gi|229334779|gb|EEO00265.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae 12129(1)]
          Length = 145

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 4/137 (2%)

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
                  +  P          G     N   T  +   R   N     +        +  
Sbjct: 2   PSLMDEFVMIPGYRIQVSAGHGALNPENMEPTRYLAFRRKWLNYRGFNEKDLAIVWAKGD 61

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           SM P     D L+++ A        + I     ++  K   S    +  L+S N  Y   
Sbjct: 62  SMEPTIHNNDTLVVHMARNKPQDGHIYIFRNGDELFVKRYQSML-GTWRLISDNAFYSPV 120

Query: 206 TVEMSD---IEWIARIL 219
            +   +    + + +++
Sbjct: 121 DIPKQEQHQFDVVGQVV 137


>gi|172036814|ref|YP_001803315.1| SOS function regulatory protein [Cyanothece sp. ATCC 51142]
 gi|171698268|gb|ACB51249.1| SOS function regulatory protein [Cyanothece sp. ATCC 51142]
          Length = 200

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 8/184 (4%)

Query: 41  SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                I      PS   + K +   +    Q       +    +  E +   L       
Sbjct: 14  WLIKYINDNQHAPSIRQMMKAMNLRSPAPVQSRLERLRNKGYIDWTEGKARTLRILHHQP 73

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSM-LPLYRKGDILI 158
            G    G    G         + +   +  + I   +    +    SM   L   GD+ I
Sbjct: 74  KGVPILGAIAAGGLVE--PFTDEQERLDLSHLIHANNYWGLRVTGDSMIEDLITDGDLAI 131

Query: 159 L---NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   +    +  G+ +  +        K    + G  + L   N  Y    V+ + IE  
Sbjct: 132 MRSLDPDETLKNGEIVAARVEGVGTTLKRFY-QEGEIVMLKPSNLNYQPIEVKANQIEVQ 190

Query: 216 ARIL 219
             ++
Sbjct: 191 GILV 194


>gi|71725310|ref|YP_272258.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558900|gb|AAZ38109.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 141

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 8/122 (6%)

Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
               +   P G      + +           + A        K    SM         ++
Sbjct: 16  IPCYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +++ + + + G  ++      + + K+LI + G  + L S N  YP   V   +   I  
Sbjct: 74  VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHVLEGEELSIWG 131

Query: 218 IL 219
           ++
Sbjct: 132 VV 133


>gi|323345117|ref|ZP_08085341.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323094387|gb|EFZ36964.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 235

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 20/212 (9%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             S  A+  G+ PT          +G+   PS + I KI A  N +   LL       ++
Sbjct: 18  NQSAFAKAIGVTPTVIANVV-GTRQGK---PSFDVITKICANANVSAEWLLTGEGDMLKS 73

Query: 83  TEKKEKEIPLLYFP-------PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
             ++ +                     +        G +       +       I  +  
Sbjct: 74  VREEPQVEVKPIHQPRSTEKKEETQVVYLYDFEASAGLRSLFDNSRQNIIDTIKIPNLPK 133

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNC----GDRL---LIKPRTGDIVAKVLISR 188
            D        SM PL + GDI++             G+             IV K +   
Sbjct: 134 CDGAIHIVGDSMYPLLKSGDIILYKQMPLDINNLLYGEMYLLSYDIDGDDYIVVKYIRKS 193

Query: 189 RGRS--IDLMSLNCCYPVDTVEMSDIEWIARI 218
                 I L S N  +    ++   +  +A +
Sbjct: 194 DKGEPYITLESENPAHAPRDIDFHRVTALALV 225


>gi|291514512|emb|CBK63722.1| SOS response UmuD protein. Serine peptidase. MEROPS family S24
           [Alistipes shahii WAL 8301]
 gi|313157456|gb|EFR56877.1| peptidase S24-like protein [Alistipes sp. HGB5]
          Length = 146

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 8/117 (6%)

Query: 98  SGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
           +             G      +++  P     +  +          +    SM      +
Sbjct: 16  APLEVPLMDSGVHAGFPSPADDSIEQP--LDLNKLVAPNPNATFFARVVGDSMKDAHIEE 73

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD+L ++ +     GD ++     G+   K +  +  + + L+  N  Y    V   
Sbjct: 74  GDLLAVDKSADPLDGDVVVSFID-GEFTLKTIRFKGAQ-VWLVPANEKYKPIEVTTD 128


>gi|159528101|ref|YP_001542664.1| hypothetical protein pLDTEXKL_p06 [Fluoribacter dumoffii]
 gi|159157946|dbj|BAF92635.1| hypothetical protein [Fluoribacter dumoffii]
          Length = 219

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 75/213 (35%), Gaps = 25/213 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +++NL    L R  G+  ++  +  +         P+ + + K+ +    T
Sbjct: 3   IGDVLSELLKKYNLNALELERLTGVPSSTIYRLLKDKGG----NPTIDVLKKLSSFFQVT 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + QL+           +       + F        F         + ++V +        
Sbjct: 59  VSQLIG----------EDPIGCKQIPFIKPMDIFCFLDSSQDRNLEIDSVPID------- 101

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
             + + ++     +QD  M P      I+I++   ++   D +L+     +      I  
Sbjct: 102 --FPLSSKCFATLSQDNMMEPFILVNSIVIVDPERKITNKDFVLLIKSKNEKPIIRQIIS 159

Query: 189 RGRSIDLMSLNCCYPVD--TVEMSDIEWIARIL 219
            G    L  LN  +PV+   + + +  +I  I+
Sbjct: 160 DGDDFYLKVLNSNFPVELKKINLKNYFFIGVIV 192


>gi|156147117|gb|ABU53702.1| cje0215 [Campylobacter phage CGC-2007]
          Length = 113

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 3/109 (2%)

Query: 112 GNKWNTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
           G   + +   E+      + +    +         SM PL + G I +++          
Sbjct: 1   GGINDLIDCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKAFKNKSI 60

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +       +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 61  CV-INTRDGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 107


>gi|229522610|ref|ZP_04412026.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae TM 11079-80]
 gi|229340595|gb|EEO05601.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae TM 11079-80]
          Length = 145

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 4/137 (2%)

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
                  +  P          G     N   T  +   R   N     +        +  
Sbjct: 2   PSPMDEFVMIPGYRIQVSAGHGALNPENMEPTRHLAFRRKWLNYRGFNEKDLAIVWAKGD 61

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           SM P     D L+++ A        + I     ++  K   S    +  L+S N  Y   
Sbjct: 62  SMEPTIHNNDTLVVHMARNKPQDGHIYIFRNGDELFVKRYQSML-GTWRLISDNPIYDKL 120

Query: 206 TVEMSD---IEWIARIL 219
            +   +    + + +++
Sbjct: 121 DIPKQEQHQFDVVGQVV 137


>gi|83815365|ref|YP_445303.1| LexA repressor [Salinibacter ruber DSM 13855]
 gi|294507178|ref|YP_003571236.1| LexA repressor [Salinibacter ruber M8]
 gi|83756759|gb|ABC44872.1| LexA repressor [Salinibacter ruber DSM 13855]
 gi|294343506|emb|CBH24284.1| LexA repressor [Salinibacter ruber M8]
          Length = 216

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 8/173 (4%)

Query: 52  WPSTESIFKILAA-TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           WP+   I       +  ++ Q L      G  T   +       +      G    G+  
Sbjct: 27  WPTYREIIDHFGYNSPNSVTQNLKALHRKGHLTRDDQGYHLATRYQEQEEPGIPVKGIIS 86

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGD 169
            G     V         + ++    Q    +    SM     R GD ++L        G 
Sbjct: 87  AGTLQEAVEADLGTITLDMLFPNLDQIFAIRVSGQSMRGANIRDGDYVLLIDEDIPEGGI 146

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219
             ++    G+   K +       + L   N  Y    ++     ++  + R +
Sbjct: 147 GAVL--YDGETSLKRVH-HDDEGLRLEPCNPEYDDIHIQPDVFEEVTILGRYV 196


>gi|33862653|ref|NP_894213.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634569|emb|CAE20555.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9313]
          Length = 207

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 46/189 (24%), Gaps = 6/189 (3%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I   +  PS   + + +   +    Q              +E +   L 
Sbjct: 15  QQELYDWLADYISSHHHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 74

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G    T    + R     +   +           SM+      
Sbjct: 75  LLGGLVSGIPVLGAVAAGGLVETFDDVQERLDLAPVLETRG-LFALTVNGDSMVDAYIAD 133

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++++    +      G  +           K        S+ L + N  Y    +   
Sbjct: 134 GDVVLMEPVPEPSRLRDGTVVSALVPGSGTTLKHFHRNGA-SVRLEAANTAYEPIELPAD 192

Query: 211 DIEWIARIL 219
            ++   +++
Sbjct: 193 QVQVQGKLV 201


>gi|148378901|ref|YP_001253442.1| putative LexA repressor [Clostridium botulinum A str. ATCC 3502]
 gi|148288385|emb|CAL82462.1| putative serine peptidase [Clostridium botulinum A str. ATCC 3502]
          Length = 535

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM+      GD +++         D +      G    K L+ ++  ++
Sbjct: 446 KNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 504

Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
            LM  N  Y    +       I 
Sbjct: 505 -LMPENKKYKPIEILEEGASIIG 526


>gi|66043996|ref|YP_233837.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254703|gb|AAY35799.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
          Length = 144

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQV 165
             P G     V   E     + +  ++       K    SM+       D+++++ +   
Sbjct: 22  QVPAGFASPAVDYIEKHVSLDELAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRTA 81

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             G+ ++      + + K L       + L S +  YP   +   D   I  ++  S
Sbjct: 82  EHGEIVVAVLNNSEPICKRLF-MMDGGVKLQSEDSAYPSKHILEGDNLVIWGVVSYS 137


>gi|257889195|ref|ZP_05668848.1| prophage pi1 protein 03 [Enterococcus faecium 1,141,733]
 gi|257825267|gb|EEV52181.1| prophage pi1 protein 03 [Enterococcus faecium 1,141,733]
          Length = 167

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193
            +    K +  SM+P       +++     V  G+   +I     +   K +       +
Sbjct: 76  GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 134

Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222
            LM  N  Y    ++ ++    + + +  S
Sbjct: 135 MLMPDNNDYHPYIIDENNPARILGKAVKVS 164


>gi|115376540|ref|ZP_01463773.1| LexA repressor [Stigmatella aurantiaca DW4/3-1]
 gi|310822049|ref|YP_003954407.1| LexA repressor [Stigmatella aurantiaca DW4/3-1]
 gi|115366473|gb|EAU65475.1| LexA repressor [Stigmatella aurantiaca DW4/3-1]
 gi|309395121|gb|ADO72580.1| LexA repressor [Stigmatella aurantiaca DW4/3-1]
          Length = 221

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 51/220 (23%), Gaps = 26/220 (11%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +   ++I   I +  E     P+                +  G +   R  ST  +
Sbjct: 1   MEELTDRQREILSFIVKETELRGFPPT---------------IREIGEQMDIR--STNGV 43

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGN---K 114
              L A             S      K+ + +  L              G    G     
Sbjct: 44  NDHLKALERKGYLNRGEQQSRSLVPTKRARMLLGLGTKKDSGMVEVPLLGKVAAGAPLLA 103

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLI 173
              +             A   +    + +  SM+      GD L +        GD ++ 
Sbjct: 104 QENMEDSVKIDSFLLGGAGGREVFALRVKGQSMIDDGIHDGDYLFVRKTPAAQPGDIVVA 163

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
                +   K      G  I     N       V  +D  
Sbjct: 164 LI-EDEATVKRYYP-EGERIRFQPANATMSPIYVNKADFR 201


>gi|331011638|gb|EGH91694.1| peptidase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 171

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 53/182 (29%), Gaps = 18/182 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   +A + G+ P +             R P  E I + L      I       
Sbjct: 1   METQQISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTSIPA 55

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--YAIQ 134
              G    +   +    Y  P  S                    P   S    I  Y  +
Sbjct: 56  SEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDYKAK 109

Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189
            +      +  SM         +G ++++++ I+   G  ++   P + +   K L+   
Sbjct: 110 GRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVEDA 169

Query: 190 GR 191
           GR
Sbjct: 170 GR 171


>gi|91204821|ref|YP_537176.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Rickettsia bellii RML369-C]
 gi|157826391|ref|YP_001495455.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Rickettsia bellii OSU 85-389]
 gi|91068365|gb|ABE04087.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Rickettsia bellii RML369-C]
 gi|157801695|gb|ABV78418.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Rickettsia bellii OSU 85-389]
          Length = 139

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               ++ +          +    SM+    R+ D+LI++ ++       ++      +  
Sbjct: 39  SLDLNSHLIKHPKSTFFVQVTGDSMIDAGIRENDLLIVDKSLPPTNNKIVIAVIN-NEFT 97

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K L      +  LM  N  +P   +E     +I  ++
Sbjct: 98  VKRLKFINDEAY-LMPENKDFPPTKIENG--TYIWGVV 132


>gi|148241141|ref|YP_001226298.1| SOS-regulated protein [Synechococcus sp. RCC307]
 gi|147849451|emb|CAK26945.1| Bacterial UmuD protein homolog (SOS-regulated protein)
           [Synechococcus sp. RCC307]
          Length = 121

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + +        +  + A        +    SM       GD+L+++ ++Q   G  ++
Sbjct: 12  ADDYLE--AGVDLNRQLIARPLSTFLLQVSGDSMLADGIHHGDLLLVDRSLQPQPGRVVV 69

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
                G    K L    G  + L + +  YP   ++ 
Sbjct: 70  AVLD-GAFTLKRLECH-GGRLRLQAAHPGYPPLELDA 104


>gi|11640739|gb|AAG39352.1| RulA [Pseudomonas syringae pv. tomato]
          Length = 141

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
             F +   P G      + +           + A        K    SM       G ++
Sbjct: 16  IPFYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHGSLV 73

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +++ + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  
Sbjct: 74  VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131

Query: 218 IL 219
           ++
Sbjct: 132 VV 133


>gi|294789897|ref|ZP_06755123.1| peptidase, S24 (LexA) family [Simonsiella muelleri ATCC 29453]
 gi|294482187|gb|EFG29888.1| peptidase, S24 (LexA) family [Simonsiella muelleri ATCC 29453]
          Length = 253

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 13/174 (7%)

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--- 115
             +     + I     +P    +   + ++              +  +     GN +   
Sbjct: 75  AVVAPKAVQPIQPTQPVPDFMRQMVSEYDEWAKSQDISAIVPVRYHTNVFGSAGNGYAML 134

Query: 116 NTVGVPEIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           + V    +    +    +    ++    + +  SM P       ++  +   V   + + 
Sbjct: 135 DNVNTESMWFRASFFDVLGVPPSRCFCTRVKGDSMHPTIIDRGTVM-WAMQSVYTSEGIY 193

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI-----EWIARILW 220
           +  +  ++  K L      +  ++S N   YPV+T+++ ++     E   R LW
Sbjct: 194 LFRQVNELRIKRLQRVNSHTYRIISDNKAFYPVETLDLREMESHEFEIYGRYLW 247


>gi|262043104|ref|ZP_06016243.1| DNA polymerase V subunit D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039555|gb|EEW40687.1| DNA polymerase V subunit D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 139

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+     +GD+L+++SA + + GD ++  
Sbjct: 32  DYVE--KRIDLNELLVQHPSATYFVKAAGDSMIDAGIDEGDLLVVDSARKADHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
              G+   K L       + L  +N  Y    V   + ++    +
Sbjct: 90  -VGGEFTVKKLQLLP--RVQLNPMNPAYSPIVVGREETLDIFGVV 131


>gi|227822462|ref|YP_002826434.1| putative phage repressor [Sinorhizobium fredii NGR234]
 gi|227341463|gb|ACP25681.1| putative phage repressor [Sinorhizobium fredii NGR234]
          Length = 241

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 56/226 (24%), Gaps = 26/226 (11%)

Query: 11  EAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRF-------GIEGRNRWPSTESI---- 58
           E + +          S  A   G+  +++   +           +   R  + + +    
Sbjct: 18  ERLRQARINARYRFASDAANALGIVASTYRAHENGQNEFDFAEAKIYARKFNVDPVWLMG 77

Query: 59  -FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                                       K             + G  D      G   + 
Sbjct: 78  EAADAETGGPIPIPKPAEVDPPNAGPPTKLVGPGKKIPVFGQAVGGVDGEFLMNGTVLHE 137

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           V  P I S  +  YA             SM P Y  G++  ++   +V  GD ++ + R 
Sbjct: 138 VLAPPILSDISDAYA-------VSVSGDSMYPRYEDGEVCFVDPGRRVRKGDYVIAQIRL 190

Query: 178 GD-----IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +        K  +      + L   N        E   +  +  I
Sbjct: 191 EEGGALLAYVKKFVRHNSSELVLEQFNPQ-KELRFEARTVHSVHYI 235


>gi|259418034|ref|ZP_05741953.1| putative phage repressor [Silicibacter sp. TrichCH4B]
 gi|259346940|gb|EEW58754.1| putative phage repressor [Silicibacter sp. TrichCH4B]
          Length = 238

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 31/220 (14%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           EA++       L+   LA KAG+      K      +G+ +  + E   +I AA   +  
Sbjct: 36  EALNGAMSASGLSMRKLAEKAGVSYEQLKKI----NQGKTQSTNAEDALRIAAALGIS-- 89

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                  S      +    I +     +G+        +  G+    +  P   S     
Sbjct: 90  -----LESFMAGEFEGTPTIAIAGKVGAGASVPVFDA-YAKGDGPQVI-CPPGLS----- 137

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-----IQVNCGDRLLIKPRTGDIVAKVL 185
               +     + +  SM P+Y  GD+L  +            G R + +   G    K +
Sbjct: 138 ---PSGVVAVEVEGDSMEPVYSAGDLLFYSRNGHDSVPSDVIGHRCVCEDEEGMGWVKQV 194

Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL--WAS 222
            +        L+SLN          + ++W AR+   W S
Sbjct: 195 KAGDEPGLFHLISLNPGANNIW--NTRLKWAARVRLHWPS 232


>gi|11640737|gb|AAG39351.1| RulA [Pseudomonas syringae pv. syringae]
          Length = 141

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 8/130 (6%)

Query: 94  YFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
           +   SG      +   P G      + +           + A        K    SM   
Sbjct: 8   WLCESGKVIPLYTFKIPAGFPNPAADHIEHDFSFDRLMDLRA--PHIYVAKIDGDSMEGA 65

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
                 +++++ + + + G  ++      + V K+LI + G  + L S N  YP   +  
Sbjct: 66  KIFHDSLVVVDRSRKPSSGSIVIAALN-NEPVCKILILQ-GDHVVLKSANPAYPPRHILE 123

Query: 210 SDIEWIARIL 219
            +   I  ++
Sbjct: 124 GEELSIWGVV 133


>gi|15807742|ref|NP_285397.1| hypothetical protein DR_A0074 [Deinococcus radiodurans R1]
 gi|6460658|gb|AAF12364.1|AE001862_190 hypothetical protein DR_A0074 [Deinococcus radiodurans R1]
          Length = 240

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 17/178 (9%)

Query: 13  IDRMAERHNLT-PSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAATNETI 69
           I     + NL+     A  AG+  TS +   R      G    PS +++ K+  A ++  
Sbjct: 38  IAERMRQLNLSTVKDFADYAGIGRTSIHDLVRGRTTTSGTWTKPSFDTLTKLAVALDKPT 97

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +LL L   +            +  +                G     +           
Sbjct: 98  HELLYLIDPEAPGANLMFDVQQVPVYIAGQ-----------VGAGPQQLWESSDVVYVER 146

Query: 130 IYAIQTQDTRHKTQDTSML---PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
            +A             SM         GD++I++  +       ++ + +    V K 
Sbjct: 147 QFAENRDLIAFTVVGDSMAGGRHPIHDGDVVIVDQRVGGEVNFPVVARLKDDGHVVKR 204


>gi|29171480|ref|NP_808664.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|301385605|ref|ZP_07234023.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063655|ref|ZP_07255196.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           tomato K40]
 gi|28855973|gb|AAO59030.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 141

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
             F +   P G      + +           + A        K    SM         ++
Sbjct: 16  IPFYTFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +++ + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  
Sbjct: 74  VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131

Query: 218 IL 219
           ++
Sbjct: 132 VV 133


>gi|317403636|gb|EFV84124.1| hypothetical protein HMPREF0005_02866 [Achromobacter xylosoxidans
           C54]
          Length = 131

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 38/129 (29%), Gaps = 6/129 (4%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
            G         G         E    +   Y  +           SM PL+  GD L+++
Sbjct: 1   MGPGLELRDQPGVIQAWHVSSEWLRKNVPSYTQKENLCIVTGFGDSMRPLFNPGDPLVVD 60

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS---IDLMSLNCCYPVDTVEMS-DIEWIA 216
             ++    D +           K L +    S   I   S N  Y    +    D E   
Sbjct: 61  RGVRSVDFDAVYFFRVGTQGFIKRLQTIPTESGFVIRAKSENTKYDSWDITEKMDFEVFG 120

Query: 217 RI--LWASQ 223
           R+  +W SQ
Sbjct: 121 RVLKVWCSQ 129


>gi|310828218|ref|YP_003960575.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612]
 gi|308739952|gb|ADO37612.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612]
          Length = 197

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 25/187 (13%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++ +  NL+ + LA + G+  T+ ++ +         +P   +I ++    + T   LL
Sbjct: 5   RQLRKERNLSQANLAERLGVSQTAVSQWETDKN-----YPDINTIKQLADIYSVTTDYLL 59

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
            +  S  +   +      +                 P G +W  +               
Sbjct: 60  GVDSSRLKKDNEIVVYTRV-----------------PAGVEWANIEERAGYEELGVKMLE 102

Query: 134 QTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
             +     K  D  M P++ K D+LI+        G+  L++    D   K +  +    
Sbjct: 103 NGKTYVGFKVSDDEMAPVFLKDDVLIIEVRDNCEDGEIALVQVSGYDAEIKYVFMQPNGV 162

Query: 193 ID--LMS 197
           +   L+ 
Sbjct: 163 LVQPLVP 169


>gi|227511733|ref|ZP_03941782.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus buchneri ATCC 11577]
 gi|227085053|gb|EEI20365.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus buchneri ATCC 11577]
          Length = 241

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 25/229 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKILA------ 63
           E +  + ++H+L+ + LA + G     S ++ +        +    E I  +        
Sbjct: 4   ENLRYLRKKHHLSQTTLAHRLGRKSVASVSEWESGKYT--PQLAIIEKIATLFNVDVADL 61

Query: 64  --------ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---- 111
                      ++  +     +S      +++    +L    +           P     
Sbjct: 62  LYRELGKANDPKSRSESFLSMYSKLTPDRQQKVYQRILELKQAEPEDDQTPIELPVTVLK 121

Query: 112 -GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                  +   E              D   K   +SMLP +    I+ + +A +   G  
Sbjct: 122 LEKTDLAITDEEESVNRPQKAGKPNFDFAVKIIGSSMLPKFCDQQIVFVTAAAKAENGQ- 180

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218
           +++    G    +        +  LM  N       ++   D   I  +
Sbjct: 181 VVLVKVDGKPYIRRYEKTSEGA-WLMPFNQDEAQVKIQYDTDFRLIGVV 228


>gi|325271359|ref|ZP_08137887.1| putative prophage repressor [Pseudomonas sp. TJI-51]
 gi|324103481|gb|EGC00800.1| putative prophage repressor [Pseudomonas sp. TJI-51]
          Length = 142

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
                  F     FP+    + +           + A        + +  SM+      G
Sbjct: 13  AKLPLFSFHVPAGFPSPAA-DHLEKRISLDELLDVRA--PHIYLVRVEGDSMIGAGIYPG 69

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           D++I++ +I+   G  ++      + + K L    G  + L S N  YP   +   +   
Sbjct: 70  DLVIVDRSIEAEPGHIVIAAVNC-EPLCKRLARD-GSQVVLKSENPRYPSRYLLEGEELQ 127

Query: 215 IARILWAS 222
           +  ++  S
Sbjct: 128 VWGVVTYS 135


>gi|39653678|ref|NP_945243.1| cI repressor [Streptococcus phage EJ-1]
 gi|38638846|emb|CAE82086.1| cI repressor [Streptococcus phage EJ-1]
          Length = 267

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 64/263 (24%), Gaps = 61/263 (23%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  FS       ++ +    N     L+R  G+  ++     +         P   ++ K
Sbjct: 16  MKVFS-----ANLNAILSDRNCKQVELSRATGIPASTLTGYVKGTS-----LPIPGNVQK 65

Query: 61  ILAATNETICQLLDLPFSDGR---------------TTEKKEKEIPLLYFPPSGSGGFFD 105
           I          L     S+                       ++  +L F         +
Sbjct: 66  IADYFGVLKSTLDPRFASEDPSIEITPTTSPIQSIYDQLAPPRQGKVLTFAERQLDEQKN 125

Query: 106 SGVFPTGNKWNTV----------------------------GVPEIRSPHNGIYAIQTQD 137
                       +                             +    S +          
Sbjct: 126 EDKTKVNEVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDNYDA 185

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
                   SM P  + GD L + +  QV+     + +   G    K L  +      L S
Sbjct: 186 IA-YVVGNSMEPKIKNGDYLFIKNTPQVDYNTIGIFQVD-GANYVKKL-RQG----YLES 238

Query: 198 LNCCYPVDTVEMS-DIEWIARIL 219
           LN  Y    ++ S DI  I  ++
Sbjct: 239 LNPDYEDIHLDESNDIRIIGEVV 261


>gi|329113888|ref|ZP_08242658.1| Prophage Repressor [Acetobacter pomorum DM001]
 gi|326696787|gb|EGE48458.1| Prophage Repressor [Acetobacter pomorum DM001]
          Length = 236

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 21/212 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   I     R  L+ +     AG+   +    ++ G       P  E++ K+     
Sbjct: 4   ELLLSRIADCLHRSELSETAACEAAGVGVNTIRHIRKRG-----HSPKIENLCKLAYFFG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                 L+     G  ++ +  ++  ++   +   G +   V      W  V  P     
Sbjct: 59  VPPAYFLEAAAVGGEASDGQMLQVQTVFVKGAVQAGRWKDAVEWAPTDWYPVYTPTNIRY 118

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKP---RTGD 179
            N       +      +  SM  +Y  G I+I             G R+++        +
Sbjct: 119 PN------VEKFGLLVRGDSMNKVYPDGSIVIAIKFSDIGSCPQIGQRVVVVRRSVDGFE 172

Query: 180 IVAKVLISRRGRSIDLMSL--NCCY-PVDTVE 208
              K         I L     +  Y     ++
Sbjct: 173 ATVKKFDKDGKGRIILWPESFSPEYQQPIILD 204


>gi|18150867|ref|NP_542804.1| DNA replication and repair protein [Pseudomonas putida]
 gi|18077108|emb|CAC86744.1| ruvA [Pseudomonas putida]
          Length = 143

 Score = 65.2 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +    P        I A        + +  SM       G +LI++ +I    G  + + 
Sbjct: 33  DYYEPPISLDELLNIRA--AHVFIVRVEGESMRDAGIFDGGVLIVDRSITPCSGQIV-LA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARILW 220
                 + K L    G    L S N  Y   T +  + ++    + W
Sbjct: 90  YVDNQPLVKRLAKAPGDGWLLESANPAYKTITPDEYASVDVFGVVTW 136


>gi|153930702|ref|YP_001393350.1| mutagenesis and repair protein MucA [Yersinia pseudotuberculosis IP
           31758]
 gi|152958243|gb|ABS45705.1| mutagenesis and repair protein MucA [Yersinia pseudotuberculosis IP
           31758]
          Length = 139

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171
             +    +    + H             +   +SM+      GD+L+++ ++    G  +
Sbjct: 33  AGYEENEL----NLHEYCVKHPAATYFLRVSGSSMVDARIHDGDVLVVDRSLTPEHGSIV 88

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +      +   K LI R      LM +N  +     +   ++    +
Sbjct: 89  IASID-NEFTVKRLILRPKPC--LMPMNSEFSPIYFDPDSLQIWGVV 132


>gi|300726615|ref|ZP_07060054.1| protein SamA [Prevotella bryantii B14]
 gi|299776102|gb|EFI72673.1| protein SamA [Prevotella bryantii B14]
          Length = 145

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              + E    +               +  SM       GD +I++ A++ + G  ++   
Sbjct: 31  EDYIHETLDFNRDYIRHPEASFYGDVEGDSMKDAGLLDGDRVIIDRAVEPHDGSIVVAWW 90

Query: 176 RTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
             G    K L    R+   I+L   N  YPV  V +  + +    ++
Sbjct: 91  D-GGFTMKFLDLTHRKDGYIELRPANPDYPVFKVKDPENFQIWGTVI 136


>gi|71910727|ref|YP_282277.1| phage transcriptional repressor [Streptococcus pyogenes MGAS5005]
 gi|71853509|gb|AAZ51532.1| phage transcriptional repressor [Streptococcus pyogenes MGAS5005]
          Length = 209

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/200 (10%), Positives = 51/200 (25%), Gaps = 15/200 (7%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           ++  + +  ++       +  +       + +        L  P++    + K++     
Sbjct: 4   VNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDPNYRLLTPYNQLTISNKEKVIGYS 63

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRH 140
                          +      +       + +     Y                 D   
Sbjct: 64  ERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGYSYFGDGNFDVVFYDEQLEYDFAS 123

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
                SM P Y  G+++++        G  +      G    K +       + L+SLN 
Sbjct: 124 WVFGDSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWDGQTYIKKVFR-EDEGLRLVSLNK 181

Query: 201 CYPVDTVE-MSDIEWIARIL 219
            Y         +   I +I+
Sbjct: 182 KYSDKFAPYSEEPRIIGKII 201


>gi|300724254|ref|YP_003713572.1| hypothetical protein XNC1_3411 [Xenorhabdus nematophila ATCC 19061]
 gi|297630789|emb|CBJ91458.1| hypothetical protein XNC1_3411 [Xenorhabdus nematophila ATCC 19061]
          Length = 203

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 20/211 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +        LT S LA KAG+  +   K              T  +  +  A    
Sbjct: 3   LADRLKEAMADKGLTQSALAEKAGMAQSMIWKLLSGKAA------KTGKLVDLAKALGVR 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L D   S  +T E     I    + P                   +  VP   S   
Sbjct: 57  PEWLSDGSGSKYQTGEADFAVIHDNRYVPIKIYEEEQETH-------ESFMVPA-LSELQ 108

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
             +        ++    +      +G ++I++   ++   D +  +      V      +
Sbjct: 109 THF---DSCRAYRITQNTGCAEAPEGTLIIVDKYEEIANDDLVYARIGDHYSV---YRYK 162

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +G S+  +S++       +  SDIE +  I+
Sbjct: 163 QGGSVGFLSVDDTRIPLIIISSDIEIVGVIV 193


>gi|254427731|ref|ZP_05041438.1| Peptidase S24-like domain protein [Alcanivorax sp. DG881]
 gi|196193900|gb|EDX88859.1| Peptidase S24-like domain protein [Alcanivorax sp. DG881]
          Length = 130

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + E                  + +  SM+      GDILI++ +++   GD ++     
Sbjct: 22  YLDEHLDLSRLCIRRPASTFLLRVEGDSMVDAGIFSGDILIVDRSLEAVAGDVVVASLD- 80

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G+   K L  +   +  L   N  Y    +    ++    +
Sbjct: 81  GEFTVKELQLQP--TPMLKPRNPAYAPIPIGGEGVDLFGVV 119


>gi|229514823|ref|ZP_04404284.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae TMA 21]
 gi|229348803|gb|EEO13761.1| prophage MuSo2 transcriptional regulator Cro/CI family [Vibrio
           cholerae TMA 21]
          Length = 141

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 6/106 (5%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            +        + G    +        +  SM P     D L+++ A        + I   
Sbjct: 31  YLAFRRKWLNYRGF--NEKDLAIVWAKGDSMEPTIHNNDTLVVHMARNKPQDGHIYIFRN 88

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
             ++  K   S    +  L+S N  Y    +   +    + + +++
Sbjct: 89  GDELFVKRYQSML-GTWRLISDNAFYSPVDIPKQEQHQFDVVGQVV 133


>gi|298485466|ref|ZP_07003551.1| Error-prone repair protein UmuD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|11640725|gb|AAG39345.1| RulA [Pseudomonas savastanoi]
 gi|298160035|gb|EFI01071.1| Error-prone repair protein UmuD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 141

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++++
Sbjct: 19  YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAAVN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133


>gi|320201046|gb|EFW75630.1| hypothetical protein ECoL_01754 [Escherichia coli EC4100B]
          Length = 119

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRR 189
                   +  SM         +G I++++  ++   G  ++       +   K L+   
Sbjct: 24  EDSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVIDA 83

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GR   L  LN  YP+  +  +  + I  ++
Sbjct: 84  GRRF-LKPLNPQYPMIEINGN-CKIIGVVV 111


>gi|242279790|ref|YP_002991919.1| peptidase S24 and S26 domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242122684|gb|ACS80380.1| peptidase S24 and S26 domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 144

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +   +    +  + + +      +    SM+    ++GDIL+++ ++  +    ++
Sbjct: 34  ADDYID--KKMDLNEHLISNKAATFLIRAYGDSMIDANIKEGDILVVDRSMDAHNNSIII 91

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K +  +R   + L+  N  YP+  +       +  ++
Sbjct: 92  AIFN-GELTVKRI-KQRAGRLFLLPENPEYPLLEITEETSFEVWGVV 136


>gi|150799|gb|AAA98277.1| mucA [Plasmid pKM101]
          Length = 145

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H       +     +   +SM       GD+L+++ ++  + G  ++      +   K L
Sbjct: 42  HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 100

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           + R      LM +N  +PV  ++   +   I  ++
Sbjct: 101 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 133


>gi|331663913|ref|ZP_08364823.1| repressor protein phage e14 [Escherichia coli TA143]
 gi|325496547|gb|EGC94406.1| e14 prophage; repressor protein phage e14 [Escherichia fergusonii
           ECD227]
 gi|331059712|gb|EGI31689.1| repressor protein phage e14 [Escherichia coli TA143]
          Length = 97

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDL 195
               +    SM+  YR GD++ ++  +    GD ++     TG+   K LI    +   L
Sbjct: 2   TYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-L 60

Query: 196 MSLNCCYPVDTVEMS-DIEWIARIL 219
            +LN  +P   ++++ +   I  ++
Sbjct: 61  KALNPNWPEPYIKINGNCSIIGTVI 85


>gi|11640719|gb|AAG39342.1| RulA [Pseudomonas syringae pv. maculicola]
          Length = 141

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++++
Sbjct: 19  YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  ++
Sbjct: 76  DRSAKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133


>gi|153800437|ref|ZP_01955023.1| protein UmuD [Vibrio cholerae MZO-3]
 gi|124124063|gb|EAY42806.1| protein UmuD [Vibrio cholerae MZO-3]
          Length = 149

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             + +  +M+       DIL+++ ++Q   GD ++  
Sbjct: 39  DYVE--QTLDLNELCIKRPAATFFVRVESDAMIDAGIHPDDILVVDRSVQAEHGDIVI-V 95

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G++  K L  R    + L+  N  Y    +   +++E    +
Sbjct: 96  GIHGELTVKELQLRP--CVMLIPRNQVYEPIHIPEGTELEIFGVV 138


>gi|158422455|ref|YP_001523747.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158329344|dbj|BAF86829.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 301

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 58/235 (24%), Gaps = 41/235 (17%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I  + +   +  +  A   G+   S +K +          P T ++ KI         
Sbjct: 64  RRIREIRKNLGMNQAEFAAALGVSQGSVSKWE-----AAKEQPRTTALLKIAELAGLPSF 118

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L      + +          +         G          +    +  P I  P    
Sbjct: 119 SLFSGTDHNQKRQGGLRAVRVVGSIQS--GYGVEAPEWDEEQHFDLMLPTPPIWGPLELS 176

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--------------NCGDRLLIKPR 176
             I         +   +   +  G  +I                       GD +++  +
Sbjct: 177 GWI--------VRGEEIWTNWPPGSYVIAAREADPDDVPQGFRPQKIPLQNGDVVVVSNK 228

Query: 177 TG---DIVAKVLISRRGRSIDLMSL-NC---CYPVDTVEMS-----DIEWIARIL 219
            G   ++  K       ++  LM L N          + +      D E +  ++
Sbjct: 229 IGHLYEVTLKRYFEYDEKTAGLMHLGNETGSAMRPININIGCINGPDFEILGLVI 283


>gi|261493124|ref|ZP_05989660.1| putative repressor protein CI [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496453|ref|ZP_05992836.1| putative repressor protein CI [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307886|gb|EEY09206.1| putative repressor protein CI [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311212|gb|EEY12379.1| putative repressor protein CI [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 279

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 60/200 (30%), Gaps = 16/200 (8%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
           ++  +   L+ + LA +  +   +             R     +I K+L         L 
Sbjct: 83  EQRRKNLGLSQAELADEFEVSQATVGNWLSN-----RREADIYTIAKLLERLGIVDVVLH 137

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                   +         L         G          +    + + +  S H   ++ 
Sbjct: 138 TDATISLTSGIFDTNTPQLKVSAALKFRGQ---------DIGEKLTLEDELSLH--YFSQ 186

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             +    +     + P    G+ +++    ++   D +LIK + G  + +VL++ R +  
Sbjct: 187 DVRAYAVRIDGEKLEPRIVSGEYIVVEPGAKLQSYDEVLIKLKDGRYMIRVLLTGRNKEW 246

Query: 194 DLMSLNCCYPVDTVEMSDIE 213
                N        + S IE
Sbjct: 247 RYADPNTMQQDTDFDPSQIE 266


>gi|218887762|ref|YP_002437083.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758716|gb|ACL09615.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 231

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 24/237 (10%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + ++++E I         T   LA    +  +S + +KR            +   K+ 
Sbjct: 1   MSTFEEVFERIKLATNTR--TQVELAEVLDIRQSSISDAKRRNSVPS------DWYMKLF 52

Query: 63  AATNETICQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                           +        +  +     + L      G      S V       
Sbjct: 53  EKFGLNPDWLKKASGPMYLRTEQGYQPLDAPAAGMVLEDPARYGDPDAKSSVVTVHSMHC 112

Query: 116 NTVGVPEIRSPHNGIYAIQTQDT-----RHKTQDTSMLPLYRKGDILILNS-AIQVNCGD 169
                           ++    T       +   +SM PL RKG  + +++    V  G+
Sbjct: 113 EVTEQGGGPLKAISKLSVPQSYTGPSMQVVRMDASSMEPLVRKGAYVGIDTAQKNVVSGE 172

Query: 170 RLLIKPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
              +      +  K +     +    L S N  +P   + +       + R+ W  Q
Sbjct: 173 LYGVYVPYEGVALKRIFLDAEKARFVLRSENPAHPEQYLPVDKHAERIVGRVAWVLQ 229


>gi|237801540|ref|ZP_04590001.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024400|gb|EGI04456.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 141

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++++
Sbjct: 19  YSFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133


>gi|281420865|ref|ZP_06251864.1| UmuD protein [Prevotella copri DSM 18205]
 gi|281405157|gb|EFB35837.1| UmuD protein [Prevotella copri DSM 18205]
          Length = 152

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
              + + +I   H             +    SM       GD+ +++  I+ + G+ ++ 
Sbjct: 44  EGEIDLNDILVRHREA------TFYVRISGDSMQDAGILDGDLAVVDRQIEPSNGNFVIA 97

Query: 174 KPRTGDIVAKVLISRRGRSI-DLMSLNCCYPVDTVEMSDIEWIARIL 219
               G+   K        +   L+  N  +    V+ ++   I  ++
Sbjct: 98  FVD-GEFTIKQFKIDESGTFGWLIPWNKNFSPIRVDETNRFMIWGVV 143


>gi|45597387|ref|NP_996677.1| phage repressor [Lactococcus phage phiLC3]
 gi|21617869|gb|AAK07510.2|AF242738_1 phage repressor [Lactococcus phage phiLC3]
          Length = 286

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 71/275 (25%), Gaps = 62/275 (22%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTES------- 57
           +K +   I    +   L+   LA+K G+  T+ +  +       + +             
Sbjct: 7   NKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAID 66

Query: 58  -------------------IFKILAATNETICQLLDLPFSDGRTTEKKEKE--------- 89
                              I KI +   E   +++    ++    + +EK+         
Sbjct: 67  DFFPQTDSTRMNVSSILSEINKISSQLEEPRQKIVLNTATNQLDEQNQEKKKESKVIPIN 126

Query: 90  ----------------------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                                   + Y P          G    G   + V   +   P 
Sbjct: 127 KIPDDLPPYISRKILENFVMPTNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPV 186

Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVL 185
              + +             SM P    G  +++ +   V+ G    ++         K +
Sbjct: 187 PAHFLSSARDYYWLMVDGHSMEPKIPYGAYVLIEAVPDVSDGTIGAVLFHDDCQATLKKV 246

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
                  + L+S+N  +        +    I + +
Sbjct: 247 YHEID-CLRLVSINKEFKDQFATQDNPAAVIGQAV 280


>gi|187778023|ref|ZP_02994496.1| hypothetical protein CLOSPO_01615 [Clostridium sporogenes ATCC
           15579]
 gi|187774951|gb|EDU38753.1| hypothetical protein CLOSPO_01615 [Clostridium sporogenes ATCC
           15579]
          Length = 495

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM+      GD +++         D +      G    K L+ ++  ++
Sbjct: 406 KDCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIV-AVNLEGSATLKRLLIKKSGAV 464

Query: 194 DLMSLNCCYPVDTVEMSDIEWIA 216
            LM  N  Y    +       I 
Sbjct: 465 -LMPENKKYKPIEILEEGASIIG 486


>gi|170730314|ref|YP_001775747.1| phage-related repressor protein [Xylella fastidiosa M12]
 gi|167965107|gb|ACA12117.1| phage-related repressor protein [Xylella fastidiosa M12]
          Length = 233

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 11/226 (4%)

Query: 1   MTSFSHKKIWEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPST 55
           MT  +   +     R+     ++H+   +    K  ++    +         G  +  + 
Sbjct: 1   MTFLNSATVALRRRRLKQWIQDQHDGVQAFFVEKISINQGELSGLLNGKKSFGEKKARTI 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E +  +     +T  + +           K       +    + +               
Sbjct: 61  EKLAGMPDNYLDTTEEEIPEKQKSSTFNIKTGNNYIRVDHIEAEAHMGQGRINEDLPEVI 120

Query: 116 NTVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           N+V  P        G      +         SM P    G+ +++++      GD L + 
Sbjct: 121 NSVEFPPNYIRSLIGFLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLV 180

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218
                   K L   R   I + S++   YP       +   I  R+
Sbjct: 181 NTGNGQQIKALH-DRNGYIYITSMDKALYPDFV--ADENTIIGGRV 223


>gi|156147292|gb|ABU53867.1| cje0215 [Campylobacter phage CGC-2007]
          Length = 111

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 116 NTVGVPEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           + +   E+      + +    +         SM PL + G I +++           +  
Sbjct: 3   DLIDCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICV-I 61

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                +  K ++ +    I L SLN  Y     +  D   I  ++
Sbjct: 62  NTRDGLFIKQVLKQDDGVI-LHSLNPLYKDIFYKNGDFLLIGVVI 105


>gi|71276790|ref|ZP_00653051.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Dixon]
 gi|71162412|gb|EAO12153.1| Peptidase S24, S26A and S26B [Xylella fastidiosa Dixon]
          Length = 259

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 11/226 (4%)

Query: 1   MTSFSHKKIWEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPST 55
           MT  +   +     R+     ++H+   +    K  ++    +         G  +  + 
Sbjct: 27  MTFLNSATVALRRRRLKQWIQDQHDGVQAFFVEKISINQGELSGLLNGKKSFGEKKARTI 86

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E +  +     +T  + +           K       +    + +               
Sbjct: 87  EKLAGMPDNYLDTTEEEIPEKQKSSTFNIKTGNNYIRVDHIEAEAHMGQGRINEDLPEVI 146

Query: 116 NTVGVPEIRSPHN-GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           N+V  P        G      +         SM P    G+ +++++      GD L + 
Sbjct: 147 NSVEFPPNYIRSLIGFLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLV 206

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWI-ARI 218
                   K L   R   I + S++   YP       +   I  R+
Sbjct: 207 NTGNGQQIKALH-DRNGYIYITSMDKALYPDFV--ADENTIIGGRV 249


>gi|15895069|ref|NP_348418.1| P-loop ATPase domain-containing fused to LexA-like protein
           [Clostridium acetobutylicum ATCC 824]
 gi|15024765|gb|AAK79758.1|AE007688_7 P-loop ATPase domain fused to LexA-like protein [Clostridium
           acetobutylicum ATCC 824]
 gi|325509207|gb|ADZ20843.1| P-loop ATPase domain fused to LexA-like protein [Clostridium
           acetobutylicum EA 2018]
          Length = 480

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 9/120 (7%)

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151
           +   P  +       +       +   +P                   K +  SM+    
Sbjct: 354 IEKIPIFNEIAAGEPILINSQIEDKFYLPRYWVKDA------KNCFILKIKGDSMINADI 407

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             GD +++         D + +    G    K L   +   I  M  N  Y    V   +
Sbjct: 408 NDGDCVVIKKTGAAENRDIVAVNID-GSATLKRLKMDKDG-IAFMPENELYSPIKVTEDE 465


>gi|54293137|ref|YP_125552.1| hypothetical protein lpl0176 [Legionella pneumophila str. Lens]
 gi|53752969|emb|CAH14405.1| hypothetical protein lpl0176 [Legionella pneumophila str. Lens]
          Length = 239

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 16/197 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   +   + E + ++   H  ++ S LAR  G+   + +       +   R  + E + 
Sbjct: 27  MADMT---LSENLQQLMRIHGNISVSELARLTGIPQPTIHHILAGSTK-NPRKKALEELS 82

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +  + +       L              KE   +   P            P+G       
Sbjct: 83  RYFSVS----IDELIGQEPLPAVIPDAVKENLQISTIPVIKWESLKEW--PSGTARTQDT 136

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              +         I          DTSM PL+++  +LI +S    N  D +++      
Sbjct: 137 QEILIDK-----KIDKNSFALIMPDTSMEPLFQQNSLLIFDSGKAPNDRDFVIVHLSKEG 191

Query: 180 IVAKVLISRRGRSIDLM 196
           I+A   +     +  L 
Sbjct: 192 IIAFNRLFIENNTFYLR 208


>gi|148550233|ref|YP_001270335.1| putative prophage repressor [Pseudomonas putida F1]
 gi|148514291|gb|ABQ81151.1| putative prophage repressor [Pseudomonas putida F1]
          Length = 142

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 7/128 (5%)

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151
                     F     FP+    + +           + A        + +  SM+    
Sbjct: 10  PSTTDLPLYSFQVPAGFPSPAA-DHLEKRISLDELLDVRA--PHIYLVRVEGDSMIGAGI 66

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMS 210
             GD+++++ +I    G  ++      + + K L    G  + L S N  Y     +E  
Sbjct: 67  YPGDLVLVDRSISPEPGHIVIAAVNC-EPLCKRLAR-EGSQVVLRSENPRYSSRYLLEGE 124

Query: 211 DIEWIARI 218
           ++E    +
Sbjct: 125 ELEIWGVV 132


>gi|15896492|ref|NP_349841.1| LacI/xre family transcriptional regulator [Clostridium
           acetobutylicum ATCC 824]
 gi|15026320|gb|AAK81181.1|AE007820_7 Predicted transcriptional regulator, lacI/xre family [Clostridium
           acetobutylicum ATCC 824]
          Length = 243

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 20/223 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------- 59
            +  E + ++ E   L+    A+K G+     N+ +        R   TES+        
Sbjct: 23  NRAGEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECG------RKVVTESLIHRIKKLY 76

Query: 60  -KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--FDSGVFPTGNKWN 116
            K +   N +  +  ++  ++ +   + +K+     +  + S          +      +
Sbjct: 77  GKDINDINMSADEEEEVRETNYQFKSQAKKKETNEVWTDALSSILKSVPVYDYSFKKVID 136

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
              +P I +   G    Q +    K ++  M      K D+   +   ++       +  
Sbjct: 137 KRSLPVIANKIEGF--NQDKVFFIKIENNDMTGFRIMKDDVAFGHMTSEIENNAIC-LIE 193

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                V + +       + L+S N      TV+ ++I+ I RI
Sbjct: 194 YNDLRVLRQIKRLDNNKLLLISNNGNLMTQTVQTNEIKIIGRI 236


>gi|332704668|ref|ZP_08424756.1| peptidase S24/S26A/S26B [Desulfovibrio africanus str. Walvis Bay]
 gi|332554817|gb|EGJ51861.1| peptidase S24/S26A/S26B [Desulfovibrio africanus str. Walvis Bay]
          Length = 249

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 74/241 (30%), Gaps = 33/241 (13%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLD--PTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            +I   ++R+A+    +P+ + R+ G+       ++       G    P+ + + ++L  
Sbjct: 5   DEIRRGVERIAKNRYGSPTAMCRELGMASQQPKISRLL-----GTGSVPAADFVAELLDK 59

Query: 65  TNETICQLLDLPFS-------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--- 114
               +     +  +       D          + +             S     G     
Sbjct: 60  LGVRLIWPDQVKDTAQEVVFIDYEVARTASAALRVTPKAEDYRAIPLTSEDVAAGPGLVP 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKT--QDTSMLPLYRKGDILILNSAI----QVNCG 168
            +++    +   H      +      K      SM P+   GD ++++           G
Sbjct: 120 EDSIQGWVLLWRHIPALMTRRNLVASKIGHNQRSMTPVLHPGDYIVIDRDDITVPDSPHG 179

Query: 169 DRLLIKPRTGDIVAKVLI---SRRGRSIDLMSLNCCYPVDTVEMSD-------IEWIARI 218
           +  L++     +  K +          + L S N  YP D ++++           + R+
Sbjct: 180 NVFLVRDPHDGLAVKRVRVQSRAGHTMLVLYSENPEYPPDIIDLTADYDGDFGRAIVGRV 239

Query: 219 L 219
           +
Sbjct: 240 V 240


>gi|187251428|ref|YP_001875910.1| LexA family transcriptional regulator [Elusimicrobium minutum
           Pei191]
 gi|186971588|gb|ACC98573.1| Transcriptional repressor, LexA family [Elusimicrobium minutum
           Pei191]
          Length = 201

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 47/171 (27%), Gaps = 7/171 (4%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-----DSG 107
            S E + + +  +++++               +                  +      + 
Sbjct: 22  LSMEELAEEMDISSKSVVHHHIKQLEKKGYLIRNTTNPHYYQIKNPEEKVVYLPMYGMAK 81

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
             P G   +      +      +     +    + + +SM  L    D LI+  +     
Sbjct: 82  CGPEGTILDGTPTRIVPVDPGMVQFPIKKGFMVEAKGSSMEDLIHAKDWLIVEQSNTPKV 141

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            D ++      + + K      G SI L+S N  +     +    +    +
Sbjct: 142 NDIVV-CVNNEETMVKRFC-TEGDSIILISDNRKFIPIIADKGSFKVEGIV 190


>gi|11640735|gb|AAG39350.1| RulA [Pseudomonas syringae pv. syringae]
          Length = 141

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++++
Sbjct: 19  YSFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEDLSIWGVV 133


>gi|261086745|gb|ACX54617.1| MucA [Escherichia coli]
          Length = 146

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H       +     +   +SM       GD+L+++ ++  + G  ++      +   K L
Sbjct: 43  HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 101

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           + R      LM +N  +PV  ++   +   I  ++
Sbjct: 102 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 134


>gi|121998067|ref|YP_001002854.1| putative prophage repressor [Halorhodospira halophila SL1]
 gi|121589472|gb|ABM62052.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Halorhodospira halophila SL1]
          Length = 142

 Score = 64.8 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V        +             +    SML +    GD+L+++ A++    D ++  
Sbjct: 35  DYVD--RALDLNELCIEHPAATYFVRAAGESMLGVGIHPGDVLVVDRALEARHRDIVIAA 92

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
              G++  K L  R   ++ L++ N  +P   + E   +E    +
Sbjct: 93  W-QGELTVKRLELRP--TLRLVAENDAFPPIDIAEPEMLEIFGVV 134


>gi|124023614|ref|YP_001017921.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9303]
 gi|123963900|gb|ABM78656.1| SOS function regulatory protein, LexA repressor [Prochlorococcus
           marinus str. MIT 9303]
          Length = 198

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 46/189 (24%), Gaps = 6/189 (3%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I   +  PS   + + +   +    Q              +E +   L 
Sbjct: 6   QQELYDWLADYIGSHHHSPSIRQMMQAMGLRSPAPVQSRLRHLQQKGWITWQEGQARTLQ 65

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                  G    G    G    T    + R     +   +           SM+      
Sbjct: 66  LLGGLVSGIPVLGAVAAGGLVETFDDVQERLDLAPVLETRG-LFALTVNGDSMVDAYIAD 124

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++++    +      G  +           K        S+ L + N  Y    +   
Sbjct: 125 GDVVLMEPVSEPSRLRDGTVVSALVPGSGTTLKHFHRNGA-SVRLEAANTAYEPIELPAD 183

Query: 211 DIEWIARIL 219
            ++   +++
Sbjct: 184 QVQVQGKLV 192


>gi|229547200|ref|ZP_04435925.1| bifunctional S24 family peptidase/transcriptional regulator
           [Enterococcus faecalis TX1322]
 gi|229307649|gb|EEN73636.1| bifunctional S24 family peptidase/transcriptional regulator
           [Enterococcus faecalis TX1322]
          Length = 244

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 69/218 (31%), Gaps = 29/218 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I ++A+  N+ P  L   +  D    ++      +         S  K++   +    
Sbjct: 46  ENIIKIADGLNMKPEDLLNLSNEDSDIISRITTILNQ-------LNSDRKLVVLNSAKQQ 98

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                   +   +   +K + L     +G G        P      T+ +PE   P +  
Sbjct: 99  LKEQKQEKNNVISLPVKKSVNLYGIMTAGYGTINYDKCQP----IETIEIPENDIPKDYD 154

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
            A        +    SM P Y  G I+ +    ++  G         G+   K +   + 
Sbjct: 155 LA-------FRVSGDSMYPTYEDGQIIFVRKQSEIEQGMIG-CVEINGNAFIKRIYKEKD 206

Query: 191 RSIDLMSLNCC--------YPV-DTVEMSDIEWIARIL 219
             +  +S N          +P   T E  +I  I +++
Sbjct: 207 -RLRFVSFNTDVDKDGNRLFPDFYTSETDEIYIIGKVV 243


>gi|148825401|ref|YP_001290154.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
 gi|229844591|ref|ZP_04464731.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
 gi|148715561|gb|ABQ97771.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
 gi|229812840|gb|EEP48529.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
          Length = 127

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
           F  G        P   S    +     +         SMLP    GD ++++ + +   G
Sbjct: 17  FNEGATEADGQEPYSDSLLCSLGVKAEKCAVFWANGNSMLPTINDGDQMLVDLSRKEIQG 76

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTV---EMSDIEWIA 216
           DR+ +      +  K +       I L+S N   YP  ++   +   ++ I 
Sbjct: 77  DRIYLVQNGESMWVKRV-KMEWDGISLISDNKEKYPPISITGKDAQHLQIIG 127


>gi|11640729|gb|AAG39347.1| RulA [Pseudomonas syringae pv. syringae]
          Length = 141

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++++
Sbjct: 19  YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIYGDSMEGAKIFHDSLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + V K+LI + G  + L S N  YP   +   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAALN-NEPVCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133


>gi|92114209|ref|YP_574137.1| XRE family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91797299|gb|ABE59438.1| transcriptional regulator, XRE family with cupin sensor protein
           [Chromohalobacter salexigens DSM 3043]
          Length = 195

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 17/196 (8%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S   +   + ++ +  +L+   LA++AG+  ++ +  ++  +      PS  S+ KIL 
Sbjct: 1   MSGFDVGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNV-----SPSVSSLKKILD 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A   +I +      +  +       E        + S     +     G        P  
Sbjct: 56  AMPVSISEFFAGEETSPQEKFFYRAEELTEIGDGNLSWRLVAARHPSRGMSIIHEHYPPG 115

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                 +   + ++        S+          +       + GD      R       
Sbjct: 116 ADTGEEMLEHEGEEGGVVIAG-SIELTVNGDTQCL-------HAGDAYYFDSRLPH---- 163

Query: 184 VLISRRGRSIDLMSLN 199
              +       ++S N
Sbjct: 164 RFRNPGDGDCVIVSAN 179


>gi|17530618|ref|NP_511216.1| MucA protein [IncN plasmid R46]
 gi|113706797|ref|YP_724516.1| MucA [Escherichia coli]
 gi|133756239|ref|YP_001096389.1| hypothetical protein pLEW517_p64 [Escherichia coli]
 gi|160431656|ref|YP_001551823.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|209901089|ref|YP_002286871.1| MucA protein [Klebsiella pneumoniae]
 gi|215528103|ref|YP_002332908.1| MucA [Klebsiella pneumoniae]
 gi|297622210|ref|YP_003675762.1| MucA [Klebsiella oxytoca KOX105]
 gi|298206584|ref|YP_003717524.1| MucA [Escherichia coli]
 gi|302141632|ref|YP_003813091.1| MucA [Klebsiella pneumoniae]
 gi|61228215|sp|P0A275|MUCA_SALTY RecName: Full=Protein mucA; Contains: RecName: Full=Protein mucA'
 gi|61228216|sp|P0A276|MUCA_ECOLX RecName: Full=Protein mucA; Contains: RecName: Full=Protein mucA'
 gi|45761|emb|CAA34606.1| unnamed protein product [Plasmid R46]
 gi|216827|dbj|BAA14175.1| MucA protein [Escherichia coli]
 gi|4335689|gb|AAB36886.2| MucA protein [Plasmid pKM101]
 gi|17342655|gb|AAL13412.1| MucA protein [IncN plasmid R46]
 gi|109390533|gb|ABG33835.1| MucA [Escherichia coli]
 gi|110084074|gb|ABG49228.1| hypothetical protein [Escherichia coli]
 gi|159885525|dbj|BAF93128.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|165928630|gb|ABY74398.1| MucA [Klebsiella pneumoniae]
 gi|209574246|gb|ACI63132.1| MucA protein [Klebsiella pneumoniae]
 gi|261086742|gb|ACX54615.1| MucA [Escherichia coli]
 gi|261086748|gb|ACX54619.1| MucA [Escherichia coli]
 gi|261086751|gb|ACX54621.1| MucA [Escherichia coli]
 gi|261086754|gb|ACX54623.1| MucA [Escherichia coli]
 gi|261086757|gb|ACX54625.1| MucA [Escherichia coli]
 gi|296033897|gb|ADG84860.1| MucA [Klebsiella pneumoniae]
 gi|296492029|gb|ADH29531.1| MucA [Klebsiella oxytoca KOX105]
 gi|296537989|gb|ADH30009.1| MucA [Escherichia coli O25b:H4 str. EC958]
 gi|296538040|gb|ADH30059.1| MucA [Escherichia coli O25b:H4 str. EC958]
          Length = 146

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H       +     +   +SM       GD+L+++ ++  + G  ++      +   K L
Sbjct: 43  HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 101

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           + R      LM +N  +PV  ++   +   I  ++
Sbjct: 102 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 134


>gi|315929874|gb|EFV09035.1| Signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
           305]
          Length = 224

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 23/194 (11%)

Query: 33  LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           + P + +  +             + + KI    N ++  +            K       
Sbjct: 29  VKPNTLSTWRTRNTIP------YDLLMKISKEHNISLDAIFFDKMRIIDDILKLRYYTDA 82

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR 152
                 G+              +  + + +  +          +    K    SM P   
Sbjct: 83  AAAAGYGAINSQLE--------YTEIAISKKFACEALGLPPLAKLDIIKVIGDSMEPFIH 134

Query: 153 KGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTV 207
            GD++ ++ +      V  GD ++     G+I  K L+ +     I L S+N  Y    V
Sbjct: 135 SGDVIAIDVSKNKLDLVKNGDIVV-INLDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVV 193

Query: 208 EMSDI---EWIARI 218
            +  I   E I  +
Sbjct: 194 NIEHINNAEIIGVV 207


>gi|330971911|gb|EGH71977.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 122

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQDTSMLPL-YRKGDILILNSAIQVNC 167
           P G     V   E     + +  ++       K    SM+       D+++++ +     
Sbjct: 2   PAGFASPAVDYIEKHVSLDELAEVRAPHVYLAKILGDSMIGAGIFDKDLIVVDRSRTAEH 61

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
           G+ ++      + + K L    G  + L S +  YP   +   D   I  ++  S
Sbjct: 62  GEIVVAVLNNSEPICKRLFMMGGG-VKLQSEDSAYPSKHILEGDNLVIWGVVNYS 115


>gi|11640721|gb|AAG39343.1| RulA [Pseudomonas syringae pv. phaseolicola]
          Length = 141

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++++
Sbjct: 19  YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGGKIFHDSLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + + K+LI + G  + L S N  YP   V   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHVLEGEELSIWGVV 133


>gi|302595457|ref|YP_003829319.1| DNA-directed DNA polymerase activity protein [Escherichia coli]
 gi|302310345|gb|ADL14213.1| MucA [Escherichia coli]
          Length = 148

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H       +     +   +SM       GD+L+++ ++  + G  ++      +   K L
Sbjct: 45  HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 103

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           + R      LM +N  +PV  ++   +   I  ++
Sbjct: 104 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 136


>gi|255020434|ref|ZP_05292500.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970147|gb|EET27643.1| SOS-response repressor and protease LexA [Acidithiobacillus caldus
           ATCC 51756]
          Length = 155

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172
             + V        H  + A        +    SML      GD+LI++ A+Q   G  ++
Sbjct: 44  ADDHVE--RSLDLHRHLLAHPDASFFLRISGDSMLAYGIHDGDLLIVDRAVQAKEGMIVV 101

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G++  K L    G+   L+  N  Y    +       +  ++
Sbjct: 102 AALD-GELTVKRLGKHAGQP-ALLPGNDRYAPIPIREGQELVVWGVV 146


>gi|169634082|ref|YP_001707818.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii SDF]
 gi|169152874|emb|CAP01907.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii]
          Length = 260

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 67/256 (26%), Gaps = 57/256 (22%)

Query: 1   MTSFSHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M++   +++  AI             + LAR AG+   +         +         ++
Sbjct: 1   MSTL-QERMSLAIKHYESETGKRFKNTELARFAGVSRANVGLWVNGPTQ----ELEGSNL 55

Query: 59  FKILAATNETICQLLDLPFSDGR------------------------------------- 81
            K       +   L                                              
Sbjct: 56  VKAAEFLGVSKDWLAGQSNKMIATQLDGGGAQLNVLDIEAFKQKYNIPDSEEAVKFVQTP 115

Query: 82  --TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
                 +++ +P+  +   G  G+F    +        V            +    +   
Sbjct: 116 TKPFPIQKRYVPVKAYSKIGMDGYFTDMGYDGNAGDGYVPT----------HTAGPRAYG 165

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
            K    SM P  R G  ++ +   ++   + + +  + G    K  I      + L+++N
Sbjct: 166 IKGTGDSMFPAIRSGWYVVCDPDAELVPTEFVQVCLKDGRCTIKEFIGIHNGVLSLIAVN 225

Query: 200 CCYPVDTVEMSDIEWI 215
                   EM ++E I
Sbjct: 226 GG-ERFFFEMDEVESI 240


>gi|227550340|ref|ZP_03980389.1| possible transcriptional regulator, XRE family protein
           [Enterococcus faecium TX1330]
 gi|227180542|gb|EEI61514.1| possible transcriptional regulator, XRE family protein
           [Enterococcus faecium TX1330]
          Length = 148

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193
            +    K +  SM+P       +++     V  G+   +I     +   K +       +
Sbjct: 57  GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 115

Query: 194 DLMSLNCCYPVDTVEMSD-IEWIARILWAS 222
            LM  N  Y    ++ ++    + + +  S
Sbjct: 116 MLMPDNNDYHPYIIDENNPARILGKAVKVS 145


>gi|317486137|ref|ZP_07944982.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Bilophila wadsworthia 3_1_6]
 gi|316922622|gb|EFV43863.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Bilophila wadsworthia 3_1_6]
          Length = 231

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 62/234 (26%), Gaps = 26/234 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++++ I         T + LA    +  +S + +KR            +   K+     
Sbjct: 5   QEVYDRIRCATNAR--TQTELAAVLEIRQSSISDAKRRNSIPS------DWYMKLFEKFG 56

Query: 67  ETICQLLDLPFSDG--------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                +                      E            +     + V+ T   +   
Sbjct: 57  LNPDWIKSGTGPMFLKIDQVYTPVEGPPEGFHEEPAHYADPNAISTLTKVYSTQCAYEEG 116

Query: 119 GVPEIRSPHNGIYAIQTQDT-----RHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLL 172
             P      +G  A+              +  S  PL R+G  + ++++      G+   
Sbjct: 117 H-PAPDLQTSGKIALPQSYVNAQTLVFHIESDSFSPLVRRGAYVGVDTSRTHPISGEVYA 175

Query: 173 IKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
           +      +  K L          L +    +P   +   D     + R+ W  Q
Sbjct: 176 VYMPHEGVALKRLFLDGDHDRFILRTEQPAHPGVALLPQDCPGRILGRVSWVLQ 229


>gi|126656635|ref|ZP_01727849.1| SOS function regulatory protein, LexA repressor [Cyanothece sp.
           CCY0110]
 gi|126621855|gb|EAZ92563.1| SOS function regulatory protein, LexA repressor [Cyanothece sp.
           CCY0110]
          Length = 200

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 8/174 (4%)

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             PS   + K +   +    Q       +    +  E +   L        G    G   
Sbjct: 24  HAPSIRQMMKAMNLRSPAPVQSRLERLRNKEYIDWTEGKARTLRILHHQPKGVPILGAIA 83

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSM-LPLYRKGDILIL---NSAIQV 165
            G         + +   +  + I   +    +    SM   L   GD+ I+   +    +
Sbjct: 84  AGGLVE--PFTDDQERLDLSHLIHANNYWGLRVTGDSMIEDLITDGDLAIMRSLDPDETL 141

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+ +  +        K    + G  + L   N  Y    V+ + IE    ++
Sbjct: 142 KNGEIVAARVEGVGTTLKRYY-QEGEIVMLKPSNLNYQPIEVKANQIEVQGILV 194


>gi|254796863|ref|YP_003081700.1| DNA-binding protein [Neorickettsia risticii str. Illinois]
 gi|254590099|gb|ACT69461.1| DNA-binding protein [Neorickettsia risticii str. Illinois]
          Length = 205

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 62/214 (28%), Gaps = 37/214 (17%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I +  E   +    LA +AG+  +           G+++ P+++ +  I      +    
Sbjct: 16  IRKRMEEIGINARELAERAGVGKSFVYDILN----GKSKNPTSKKLNSISRELGIS---- 67

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPEIRSPHNGI 130
                              + Y               P  +  N   V     R+     
Sbjct: 68  -------------------ISYLINVSPDSIDYENYLPVHSLDNQLSVSFLFNRAFCEEH 108

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD----RLLIKPRTGDIVAKVLI 186
            +   +       D SM P     + LI+   +Q   GD     + +     + + + + 
Sbjct: 109 ISEAGKLYSCIMYDDSMSPSIMPNETLIIKKFVQ---GDRMKSGVFLIRDKFNSIVRSVE 165

Query: 187 SR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                + + +   N  Y        +I+ I +++
Sbjct: 166 HIFGSQDVKITPDNEKYSTYIKHFDEIDIIGKVI 199


>gi|206576780|ref|YP_002238953.1| protein UmuD [Klebsiella pneumoniae 342]
 gi|206565838|gb|ACI07614.1| protein UmuD [Klebsiella pneumoniae 342]
          Length = 160

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM      +GD+L+++S+     GD ++  
Sbjct: 53  DYVE--QRIDLNELLVNHPSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAA 110

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              G+   K L       + L  +N  Y    V   D
Sbjct: 111 VD-GEFTVKKLQLHP--RVQLNPMNPAYSPIIVGSKD 144


>gi|116667750|pdb|2HNF|A Chain A, Structure Of A Hyper-Cleavable Monomeric Fragment Of Phage
           Lambda Repressor Containing The Cleavage Site Region
          Length = 133

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 135 TQDTRHKTQDTSMLP------LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                 + +  SM         +  G +++++    V  GD  + +    +     LI  
Sbjct: 42  DSAFWLEVEGNSMTTPTGSKTSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFAKLIRD 101

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
            G+   L  LN  YP+          + +++ ASQ
Sbjct: 102 SGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 133


>gi|193077060|gb|ABO11817.2| DNA polymerase V component [Acinetobacter baumannii ATCC 17978]
          Length = 203

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 92  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K LI         + L + N  Y    +E      I  ++
Sbjct: 151 NDFTVKRLIIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195


>gi|28868298|ref|NP_790917.1| peptidase, S24 family [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28851535|gb|AAO54612.1| peptidase, S24 family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 133

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 100 SGGFFDSGVFPTGNKWNTVG-VPEIRSPHNGI--YAIQTQDTRHKTQDTSM----LPLYR 152
              +        G+    V   P   +    +  Y  +        +  SM     P   
Sbjct: 1   MYRYPVVSWVAAGDWSEAVEPYPPGAADEYDVSDYKAKGPAFWLVVKGDSMTAPTAPSIP 60

Query: 153 KGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           +G  +++++  +V  G  ++     + +   K L+   G    L  LN  YP       D
Sbjct: 61  EGSQILVDTRAEVLPGKLVIAKLAGSNEATFKKLVEYGGVRY-LKPLNSAYPTVQCT-ED 118

Query: 212 IEWIARIL 219
              I  ++
Sbjct: 119 CRIIGIVV 126


>gi|119383726|ref|YP_914782.1| putative phage repressor [Paracoccus denitrificans PD1222]
 gi|119373493|gb|ABL69086.1| putative phage repressor [Paracoccus denitrificans PD1222]
          Length = 203

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 39/215 (18%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++     L    L  +  + P   +           + PS + + +I           
Sbjct: 5   IGKILAERGLKQRWLVEQLDVSPGYVSNLVAGT-----KRPSAQMLERIAEVF------- 52

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                       + ++ + +     +G+        +  G     V  P+          
Sbjct: 53  ----ELPASAILEGQRPVAVAGKVGAGNTVVELVDAYAKGGGLYHVAAPDDL-------- 100

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAKVLIS- 187
             +     +    SM PL   GDI+              G   + +   G  + K +   
Sbjct: 101 PSSGIVAVEVAGDSMSPLIEPGDIVFFTRHFVGIDPAAIGHVSICQTDDGRALIKQIRRG 160

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIA-RILWA 221
           R   + DL S+N  +P +            R++WA
Sbjct: 161 REEGTFDLYSVNSAHPPEY---------GVRLVWA 186


>gi|290512990|ref|ZP_06552354.1| regulatory protein CI bacteriophage origin [Klebsiella sp. 1_1_55]
 gi|289774603|gb|EFD82607.1| regulatory protein CI bacteriophage origin [Klebsiella sp. 1_1_55]
          Length = 161

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 14/139 (10%)

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT---------RHKTQD 144
           +                 G         EI        A                   + 
Sbjct: 13  HINHDVFRVDILDLAVSAGPGIVNQEFVEILHSVEYAPAEARHMFDGRKAENIRIINVRG 72

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM      GD+L ++ +++   GD +           K L   +   + ++S N  Y  
Sbjct: 73  DSMSGTIEPGDLLFVDISVKSFDGDGIYAFLYDDTAHVKRLQKMKD-KLLVISDNKSYAA 131

Query: 205 DT-VEMSD---IEWIARIL 219
              +E  +   +    +++
Sbjct: 132 WDPIEKDEMNRVFVFGKVI 150


>gi|294674549|ref|YP_003575165.1| S24 family peptidase [Prevotella ruminicola 23]
 gi|294474294|gb|ADE83683.1| peptidase, S24 (LexA) family [Prevotella ruminicola 23]
          Length = 270

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 3/131 (2%)

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
                    +   +       G       +P        +     Q         SM  +
Sbjct: 9   QWPMEMVCDTPVPYYEVGVSCGLPGEMGELPPEMVLLPSMLTRGRQVFIVDADGDSMTGV 68

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
               GD L++ S  +V+CG+ +++    G+ + KV          L++ N  Y    +  
Sbjct: 69  GIYSGDALLIESTQRVHCGE-VVMVSIDGEELLKVYYVDDTGRHWLLAANPKYQPRELTA 127

Query: 210 S-DIEWIARIL 219
             ++    R++
Sbjct: 128 DMNVRICGRMV 138


>gi|46446610|ref|YP_007975.1| SOS mutagenesis and repair protein UmuD [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400251|emb|CAF23700.1| probable SOS mutagenesis and repair protein UmuD [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 143

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              + +    +  +    +     K   +SM+       DIL+++ ++    G +++I  
Sbjct: 35  ENEMADRIDLNALLIKHPSATFFLKVSGSSMINAGIHHQDILVVDRSLPAVDG-KVVIAS 93

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G++  K L     + + L++ N  YP   +       I  ++
Sbjct: 94  VDGELTVKRL-KIAFKKVQLIAENDQYPSIEISEEMNLHIWGVV 136


>gi|11640733|gb|AAG39349.1| RulA [Pseudomonas syringae pv. syringae]
          Length = 141

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++++
Sbjct: 19  YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIYGDSMEGAKIFHDSLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + V K+LI + G  + L S N  YP   +   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAALN-NEPVCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133


>gi|254422316|ref|ZP_05036034.1| LexA repressor [Synechococcus sp. PCC 7335]
 gi|196189805|gb|EDX84769.1| LexA repressor [Synechococcus sp. PCC 7335]
          Length = 207

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 37/231 (16%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +H  +++++ +      +  +PS                ++   E + + P     
Sbjct: 1   MEPLTHAQQELYDWLVVYIRENRHSPS---------------IRQMMREMKLKSP----- 40

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             + +  +    +           T +  K+   +    + + G        T +   T+
Sbjct: 41  APVQSRLDHLRRKGYIEWKEGQARTIRILKDKQGVPIFGAIAAGSIVETFADTLDADETL 100

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNC--GDRLLIKP 175
                          +  D   + +  SM   L   GDI+I+             ++   
Sbjct: 101 ER-----FDPTALDFKGSDFALRVRGDSMIEALIDDGDIVIMRKVQDPKRIRNGTIVAAR 155

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW----IARILWAS 222
               +  K         + L   N  +       +++      I   +W S
Sbjct: 156 VESAMTLK-YYYLEDGKVTLKPANPRFAPMEYPAAEVSIDGELIG--VWRS 203


>gi|157370845|ref|YP_001478834.1| peptidase S24/S26 domain-containing protein [Serratia
           proteamaculans 568]
 gi|157322609|gb|ABV41706.1| peptidase S24 and S26 domain protein [Serratia proteamaculans 568]
          Length = 140

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 7/124 (5%)

Query: 100 SGGFFDSGVFPTGNKWNTVGVP-EIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDIL 157
                 +   P G               +    +  +          SM       G +L
Sbjct: 13  QFIPLYADNVPAGFPSPAQDYIHARIDLNEYCISHPSATYFLIASGESMIEAGITDGSML 72

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS--DIEWI 215
           +++ +I    GD ++     G+   K L     +   L  +N  +    +     +++ +
Sbjct: 73  VVDRSIGACHGDIVI-ASIAGEFTVKRLCLHPVK--QLEPMNPTFRPIPLPDDGAELDIV 129

Query: 216 ARIL 219
             ++
Sbjct: 130 GVVV 133


>gi|114049346|ref|YP_739896.1| LexA repressor [Shewanella sp. MR-7]
 gi|123325823|sp|Q0HPW6|LEXA_SHESR RecName: Full=LexA repressor
 gi|113890788|gb|ABI44839.1| SOS-response transcriptional repressor, LexA [Shewanella sp. MR-7]
          Length = 206

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A + G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIAETGMPPTRAEIATRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E+   E  L                   G    
Sbjct: 45  EHLKALAKKGCIEIMPGTSRGIRLPVEEEDNSETGLPLIGQ-----------VAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      + D   + +  SM  +   +GD+L ++   Q   G  + +  
Sbjct: 94  AQEHVEQYYQVDPSMFHPSADFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L + N  Y    V++S
Sbjct: 153 VDDDVTVKRFEKK-GNLVYLHAENEDYSPIKVDLS 186


>gi|262043736|ref|ZP_06016841.1| repressor protein c2 [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259038915|gb|EEW40081.1| repressor protein c2 [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 236

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 15/226 (6%)

Query: 2   TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
            + +  +I +A  +  +     +   +T   +A    +                    + 
Sbjct: 5   KTLTSAQIADAERLKALYEAKKKELGITQQSIADMLDISQGGVGHYLNGRNALNAAVAAV 64

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            +    +  ++ +     ++       T   +                  +G +      
Sbjct: 65  FARALQVDVSDFSPSLAKEISAMSAAATSNAKYVGQYTPGIKYPVLSKIQAGHWSE--AC 122

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRL 171
               + +I         IQ        +  SM         +G  ++ ++  +   G  +
Sbjct: 123 EPYALKDIDLWLESDAHIQGDAFWLLVEGESMTAPVGLSIPEGTYVLFDTGREPVNGSLV 182

Query: 172 L-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +     + D   K LI    +   L  LN  +P+  +  +    I 
Sbjct: 183 IAKLSESNDATFKKLIIDGDQKY-LKGLNPQWPLVPINGN-CRIIG 226


>gi|254426362|ref|ZP_05040078.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335]
 gi|196187776|gb|EDX82742.1| Peptidase S24-like domain protein [Synechococcus sp. PCC 7335]
          Length = 142

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            +     +    SM+       D+LI++ + +   G  ++     G++  K L  +  ++
Sbjct: 50  PSATFLVRADGWSMVGEGIHHEDLLIVDRSEEPRHGRVVVAAID-GELTVKKLCQKEQQT 108

Query: 193 IDLMSLNCCYPVDTVEMS-DIEWIARIL 219
             LM+ N  YP   +    D+     ++
Sbjct: 109 F-LMAANPDYPSIELGEDADVRIWGVVI 135


>gi|150007493|ref|YP_001302236.1| hypothetical protein BDI_0844 [Parabacteroides distasonis ATCC
           8503]
 gi|149935917|gb|ABR42614.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 222

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 18/222 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++++   ID +        +  A+   + PTS +       + R   PS + + KI+   
Sbjct: 5   NERLQIIIDEL---FGGNKAKFAKAIEIAPTSISNYL---SDKRQSKPSADMLEKIINVV 58

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                + L             + +         G   +    +      ++ V   +  +
Sbjct: 59  ENISAEWLLTGNGKMLNQYSNDTKDEPKISYTKGVPYYNVDFI----GGFDLVLNDQTIN 114

Query: 126 PHNGIYAIQTQD--TRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGDI 180
           P   I   +  D          SM P    GD++ L        +  G+   I       
Sbjct: 115 PEYLIDFKKYNDATCWCNVTGHSMEPEINHGDMIALKKIEDKSFLPLGEVYAIVTTNDMR 174

Query: 181 VAKVLIS-RRGRSIDLMSLNC--CYPVDTVEMSDIEWIARIL 219
             K L + +   S  L+  N    Y    +    I  I ++L
Sbjct: 175 TIKRLAAGKTDDSYTLIPSNKSAEYSPQQLPSKMIRSIFQVL 216


>gi|315637193|ref|ZP_07892415.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315478560|gb|EFU69271.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 68

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 24/61 (39%)

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +         D +        +  K +  R    +D++S N  YP   +  +D+E + ++
Sbjct: 1   MIKQKNDVSRDGIYAFTTIHGLFVKRIQRRVDGKLDIISDNKDYPSQVLNKNDLEILGKV 60

Query: 219 L 219
           +
Sbjct: 61  I 61


>gi|38348012|ref|NP_941261.1| putative UV protection and repair protein [Serratia marcescens]
 gi|157412150|ref|YP_001481491.1| UV protection and repair protein [Escherichia coli APEC O1]
 gi|190410339|ref|YP_001965842.1| mucA [Klebsiella pneumoniae]
 gi|226807749|ref|YP_002791445.1| MucA [Enterobacter cloacae]
 gi|226810063|ref|YP_002791758.1| MucA [Enterobacter cloacae]
 gi|38259489|emb|CAE51717.1| putative UV protection and repair protein [Serratia marcescens]
 gi|99867175|gb|ABF67820.1| UV protection and repair protein [Escherichia coli APEC O1]
 gi|146151133|gb|ABQ02899.1| mucA [Klebsiella pneumoniae]
 gi|226425976|gb|ACO54069.1| MucA [Enterobacter cloacae]
 gi|226426290|gb|ACO54382.1| MucA [Enterobacter cloacae]
          Length = 144

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H  +   +      +    SM+      G IL+++ ++    G  ++     G+   K+L
Sbjct: 42  HEYVVRNRPSTFFVRAAGLSMINAGINDGAILVVDRSLTARHGSIVVALVD-GEFTVKIL 100

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +     + LM  N  Y    V    +E    +
Sbjct: 101 HTYP--ELLLMPSNPAYKPIRVNPESLEIWGVV 131


>gi|189499875|ref|YP_001959345.1| peptidase S24 and S26 domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495316|gb|ACE03864.1| peptidase S24 and S26 domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 150

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + + +      +  +    +     + +  SM+     +GDIL+++ ++    GD  +
Sbjct: 40  AEDHLEL--KLDLNKELIRHPSATFYGRVKGYSMVDAGIDEGDILVIDKSLDPKEGDIAV 97

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K +  + G  + LM  N  +    V   +   +  I+
Sbjct: 98  CFLD-GEFTVKRIGKQ-GGRMCLMPANEEFDPIPVTGENEFIVWGIV 142


>gi|325510651|gb|ADZ22287.1| transcriptional regulator, lacI/xre family [Clostridium
           acetobutylicum EA 2018]
          Length = 222

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 20/223 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------- 59
            +  E + ++ E   L+    A+K G+     N+ +        R   TES+        
Sbjct: 2   NRAGEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECG------RKVVTESLIHRIKKLY 55

Query: 60  -KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF--FDSGVFPTGNKWN 116
            K +   N +  +  ++  ++ +   + +K+     +  + S          +      +
Sbjct: 56  GKDINDINMSADEEEEVRETNYQFKSQAKKKETNEVWTDALSSILKSVPVYDYSFKKVID 115

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKP 175
              +P I +   G    Q +    K ++  M      K D+   +   ++       +  
Sbjct: 116 KRSLPVIANKIEGF--NQDKVFFIKIENNDMTGFRIMKDDVAFGHMTSEIENNAIC-LIE 172

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                V + +       + L+S N      TV+ ++I+ I RI
Sbjct: 173 YNDLRVLRQIKRLDNNKLLLISNNGNLMTQTVQTNEIKIIGRI 215


>gi|156936736|ref|YP_001436087.1| DNA-binding protein RDGA [Vibrio harveyi ATCC BAA-1116]
 gi|156529983|gb|ABU75067.1| hypothetical protein VIBHAR_p08220 [Vibrio harveyi ATCC BAA-1116]
          Length = 196

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 75/216 (34%), Gaps = 30/216 (13%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + + ++ +   + LT   +   AG+  T+ +K ++  I      P    + ++    N
Sbjct: 2   KTLGQRLEELRVNNRLTKKDVGHVAGVTGTTVDKWEKDLII-----PRDAKLKRLAEHYN 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L         T   +   + +  +       FFD+ + P+G+             
Sbjct: 57  VSFEWLRVGVDGAKVTPVPESFAVSIQSYKEGDESVFFDARLLPSGHSE----------- 105

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                    +    + +  SM  +   G  LI++   +    D+L +      +  + L 
Sbjct: 106 ---------RLVYVQVEGHSMGDILPDGSKLIVDLEDRHYKDDKLYVFKTQDFMSIRRLS 156

Query: 187 SRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARIL 219
                 + L SL      + +   ++S ++ + R++
Sbjct: 157 F-TSTGVRLQSL-GSQKDEVLTFQQLSKVDVLGRVI 190


>gi|290512882|ref|ZP_06552247.1| DNA polymerase V [Klebsiella sp. 1_1_55]
 gi|289774765|gb|EFD82768.1| DNA polymerase V [Klebsiella sp. 1_1_55]
          Length = 97

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            +     K    SM      +GD+L+++S+     GD ++     G+   K L     + 
Sbjct: 6   PSATYFVKAAGDSMKDAGIGEGDLLVVDSSRTAVHGDIVIAAVD-GEFTVKKLQLH--QR 62

Query: 193 IDLMSLNCCYPVDTVEMSD 211
           + L  +N  Y    V   D
Sbjct: 63  VQLNPMNPAYSPIVVGSED 81


>gi|169796315|ref|YP_001714108.1| component of DNA polymerase V [Acinetobacter baumannii AYE]
 gi|213156950|ref|YP_002318995.1| DNA polymerase V component [Acinetobacter baumannii AB0057]
 gi|215483774|ref|YP_002325999.1| Protein samA [Acinetobacter baumannii AB307-0294]
 gi|301345815|ref|ZP_07226556.1| Protein samA [Acinetobacter baumannii AB056]
 gi|301513708|ref|ZP_07238945.1| Protein samA [Acinetobacter baumannii AB058]
 gi|301595076|ref|ZP_07240084.1| Protein samA [Acinetobacter baumannii AB059]
 gi|332851603|ref|ZP_08433552.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332866490|ref|ZP_08437032.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
 gi|169149242|emb|CAM87124.1| component of DNA polymerase V [Acinetobacter baumannii AYE]
 gi|213056110|gb|ACJ41012.1| DNA polymerase V component [Acinetobacter baumannii AB0057]
 gi|213987257|gb|ACJ57556.1| Protein samA [Acinetobacter baumannii AB307-0294]
 gi|332729831|gb|EGJ61165.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332734569|gb|EGJ65678.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
          Length = 203

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 92  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K LI         + L + N  Y    +E      I  ++
Sbjct: 151 NDFTVKRLIIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195


>gi|13487804|ref|NP_108682.1| cI2009 [Lactococcus phage Tuc2009]
 gi|509672|gb|AAA21825.1| cI2009 [Bacteriophage Tuc2009]
          Length = 286

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 70/275 (25%), Gaps = 62/275 (22%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTES------- 57
           +K +   I    +   L+   LA+K G+  T+ +  +       + +             
Sbjct: 7   NKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAID 66

Query: 58  -------------------IFKILAATNETICQLLDLPFSDGRTTEKKEK---------- 88
                              I KI +   E   +++    ++    + +EK          
Sbjct: 67  DFFPQTDSTRMNVSSILSEINKISSQLEEPRQKIVLNTATNQLDEQNQEKKKESKVIPIN 126

Query: 89  ---------------------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                                   + Y P          G    G   + V   +   P 
Sbjct: 127 KIPDDLPPYISRKILENFIMPSNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPV 186

Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVL 185
              + +             SM P    G  +++ +   V+ G    ++         K +
Sbjct: 187 PAHFLSSARDYYWLMVDGHSMEPKIPYGAYVLIEAVPDVSDGTIGAVLFQDDCQATLKKV 246

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
                  + L+S+N  +        +    I + +
Sbjct: 247 YHEID-CLRLVSINKEFKDQFATQDNPAAVIGQAV 280


>gi|315181695|gb|ADT88608.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Vibrio
           furnissii NCTC 11218]
          Length = 198

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 39/152 (25%), Gaps = 15/152 (9%)

Query: 81  RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIYA 132
              +    +I  L                  G           + + +P+      G+  
Sbjct: 41  PPEQSNVSKIVPLADVKDWCELAVFDVHAAAGAGSLVHSEYQIDKLIIPKSLLAEFGL-- 98

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLIS-RRG 190
                        SM P     D L+++   +Q    D + +      +  K L      
Sbjct: 99  APNCAAIIYVDGNSMEPTLSHKDRLLVDTRELQHPVTDGVYVIRIDDAVYVKRLKWNIPK 158

Query: 191 RSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219
               ++S N  Y    +      + + I + +
Sbjct: 159 GIYQVISDNPTYESFEINHKNGRNFKIIGKAI 190


>gi|86134354|ref|ZP_01052936.1| peptidase S24-like protein [Polaribacter sp. MED152]
 gi|85821217|gb|EAQ42364.1| peptidase S24-like protein [Polaribacter sp. MED152]
          Length = 144

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 4/123 (3%)

Query: 99  GSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD-TRHKTQDTSMLPL-YRKGDI 156
             G  F       G    T  +   +   +             K +  SM+       D+
Sbjct: 17  HEGAVFIDTGISAGFPSTTEDIVGEKISLDDTLVRNKDTTFYAKVRGQSMINAGLNHDDL 76

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           L+++ +++       +     G+   K L  ++   I L   N  YP+  +   +   I 
Sbjct: 77  LVIDRSLEPADKKIAVCYID-GEFTVKRLRVQKNE-IWLQPENPDYPIINITEDNDFMIW 134

Query: 217 RIL 219
            I+
Sbjct: 135 GIV 137


>gi|300714992|ref|YP_003739795.1| UmuD protein [Erwinia billingiae Eb661]
 gi|299060828|emb|CAX57935.1| UmuD protein [Erwinia billingiae Eb661]
          Length = 139

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               +N +          K    SM       GD+L++++++    GD ++     G+  
Sbjct: 37  RLDLNNLLIQRPDSTYFIKVSGESMKDAGINDGDLLVVDNSLTAGHGDIVVAAID-GEFT 95

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
            K L  R   ++ L+++N  +    +   D +E    +
Sbjct: 96  VKKLQLRP--TVQLIAMNARWAPIVLSGEDKLEIFGVV 131


>gi|295698218|ref|YP_003602874.1| mutagenesis and repair protein MucA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295060330|gb|ADF65066.1| mutagenesis and repair protein MucA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 145

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA 162
                 P+    +          HN      +     +    SM+       D+L+++ +
Sbjct: 26  PCGFPLPSEGIEDQ-----PLDLHNYCVKRPSSTFFIRCDGLSMIDAGIAPRDLLVVDCS 80

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           I+   G  ++ +   G+   K L  R   +  L+ +N  +PV  VE   +E    +
Sbjct: 81  IRPEHGAIVVARVD-GEFTVKKLQLRPFPA--LIPMNPDFPVIEVEPELLEIFGVV 133


>gi|206579018|ref|YP_002239977.1| phage repressor protein [Klebsiella pneumoniae 342]
 gi|206568076|gb|ACI09852.1| phage repressor protein [Klebsiella pneumoniae 342]
          Length = 238

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 59/226 (26%), Gaps = 15/226 (6%)

Query: 2   TSFSHKKIWEA--IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
            + +  +I EA  +  +     +   +T   +A    +                    + 
Sbjct: 7   KTLTSAQIAEAERLKAIYEAKKKELGITQQSIADMLDISQGGVGHYLNGRNALNAAVAAV 66

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            +    +  ++ +     ++       T                      +G +      
Sbjct: 67  FARALQVDVSDFSPSLAKEISAMSAAATSNARYVGQYTQGIKYPVLSKIQAGHWSE--AC 124

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRL 171
               + +I         IQ        +  SM         +G  ++ ++  +   G  +
Sbjct: 125 EPYALKDIDLWLESDAHIQGDAFWLLVEGESMTAPVGLSIPEGTYVLFDTGREPVNGSLV 184

Query: 172 L-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +     + +   K LI    +   L  LN  +P+  +  +    I 
Sbjct: 185 IAKLSESNEATFKKLIIDGDQKY-LKGLNPQWPLVPINGN-CRIIG 228


>gi|330886947|gb|EGH20312.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 199

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 47/199 (23%), Gaps = 16/199 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y     + G   + +         
Sbjct: 65  GPKHPNESANENTGDDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLM 196
           G +  + L       + L 
Sbjct: 181 GILRVRYLYRMPNGGLRLR 199


>gi|260598021|ref|YP_003210592.1| protein umuD [Cronobacter turicensis z3032]
 gi|260217198|emb|CBA31065.1| Protein umuD [Cronobacter turicensis z3032]
          Length = 143

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V        H  ++         +    SM       GD+L+++SA++    D ++  
Sbjct: 36  DYVEKRVSLDAHCIVH--PNATYFLRASGESMNGAGIEDGDLLVVDSALKPQENDIVVAA 93

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILWA 221
              G+   K L         L+ +N  +     V  +D+     + W 
Sbjct: 94  -LEGEFTVKTLRLHP--VAQLVPMNPDFAPIPLVGDADVVIFGVVTWV 138


>gi|257482356|ref|ZP_05636397.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 199

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 47/199 (23%), Gaps = 16/199 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y     + G   + +         
Sbjct: 65  GPKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSIDLM 196
           G +  + L       + L 
Sbjct: 181 GILRVRYLYRMPNGGLRLR 199


>gi|291530642|emb|CBK96227.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Eubacterium siraeum 70/3]
          Length = 202

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 50/222 (22%), Gaps = 42/222 (18%)

Query: 5   SHKKIWEAIDRMAERHNL------TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
            +  +   I + AE + L      + S +A   G+   +  +  +   E           
Sbjct: 4   KNTDLMNEIKKFAEEYYLEYWKSPSTSEIAGAVGVTRATVYRYLKDMAE----------- 52

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                                      + K      +   G+           G      
Sbjct: 53  ------------------RGMIDYDGSEIKTDVTRKYTDPGNNAVILDCSVSCGIGLPEE 94

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                                 K    SM+      GD +++      N GD ++     
Sbjct: 95  ERVLEYVKLPKTVFGTGDLFLLKANGDSMVDAGIEDGDWIVVRKQTDANEGDIVVALF-E 153

Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCC--YPVDTVEMSDIEWIA 216
           G    K     ++     L S N    Y    V   D++   
Sbjct: 154 GLNNLKYFYWNKKKNCAVLRSANEAKGYKDIEVY--DLQIQG 193


>gi|317051665|ref|YP_004112781.1| peptidase S24/S26A/S26B [Desulfurispirillum indicum S5]
 gi|316946749|gb|ADU66225.1| Peptidase S24/S26A/S26B, conserved region [Desulfurispirillum
           indicum S5]
          Length = 150

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V        +             + +  SM+    R GDILI++ +++    D ++  
Sbjct: 35  DYVE--RTLDLNELCIRNAPATFFVRAEGDSMINAGIRPGDILIVDRSLEPRHKDIVI-A 91

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218
              G++  K+L +    +I L+ +N  Y    V    ++E    +
Sbjct: 92  KIHGELTVKLLHTTP--TISLVPMNPNYQPIQVREEHEMEIFGVV 134


>gi|221128063|ref|XP_002155836.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
 gi|260222725|emb|CBA32570.1| Protein umuD [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 147

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E       +          +    SM        DIL+++ AI+      ++     G+ 
Sbjct: 41  ERIDLSKVLITHPQATFLQRVSGHSMKDAGIFDNDILVIDRAIKPRHKMIVVAVVD-GEF 99

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L  +R   + L + N  YP    +      I  ++
Sbjct: 100 TVKQLY-QRAGRVKLQAANPTYPDIVPKEGQTIEIWGVV 137


>gi|37520278|ref|NP_923655.1| LexA repressor protein [Gloeobacter violaceus PCC 7421]
 gi|35211271|dbj|BAC88650.1| LexA repressor protein [Gloeobacter violaceus PCC 7421]
          Length = 191

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 48  GRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           G    P   ++ + L     T+ + L L    G      + +    Y  P   G      
Sbjct: 18  GSTPLPPIRTLAQELDQHRTTVYRWLQLLEQMGYL----KAQGNRYYIDPDLLGIPLLEN 73

Query: 108 VFPTGN--KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQ 164
             P G+        +    S    +   +T     + +  SM      +GDI+++N   +
Sbjct: 74  RVPAGSPVTVEEDLLNSRMSLDEYLVEERTGTFLLRVKGDSMIEAGIFEGDIVVVNQNRR 133

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
              GD ++ +   G++  K L  R  ++  L   N  Y    
Sbjct: 134 AADGDVVIARVD-GEMTLKTLRRRNQQT-WLEPANSRYSPIH 173


>gi|297539371|ref|YP_003675140.1| peptidase S24/S26A/S26B, conserved region [Methylotenera sp. 301]
 gi|297258718|gb|ADI30563.1| Peptidase S24/S26A/S26B, conserved region [Methylotenera sp. 301]
          Length = 197

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              ++            + +  SM+      G  +I++ A++      ++     G+ + 
Sbjct: 95  LDLNDRYITNPPATFFFQVKGDSMIGAGIYDGSTVIVDRAVKPKSSSIII-ADVDGEWMV 153

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARILWA 221
           K L  R G  + L+S N  +    + E  ++     +++ 
Sbjct: 154 KRLYKR-GNVVKLLSENPEHAPIVLAEGQELVIFGVVMYV 192


>gi|289566177|ref|ZP_06446611.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294619696|ref|ZP_06699112.1| conserved hypothetical protein [Enterococcus faecium E1679]
 gi|289162038|gb|EFD09904.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291594079|gb|EFF25537.1| conserved hypothetical protein [Enterococcus faecium E1679]
          Length = 279

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 67/273 (24%), Gaps = 58/273 (21%)

Query: 2   TSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-------------- 41
              S +       I   + ++   H  T + L+   G+  T+ +                
Sbjct: 4   KPLSEEDKKARSIIANNLKKIT--HGYTRAQLSDMTGIPVTTLSGYFTEKSTISMENAEL 61

Query: 42  --------KRFGIEGRNRWPSTESIFK-ILAATNETICQL----------LDLPFSDGRT 82
                   K       +R  +   + K +L    E                         
Sbjct: 62  IAKAFNVDKSDIDPRYSREYNYYDLKKEVLDELQENNKSFVADKFVELAEKANAAGMTLN 121

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-------NKWNTVGVPEIRSPHNGIYAIQT 135
             K ++   +           F       G          + +    I     G YA   
Sbjct: 122 RTKTDRGNIMTVLSSDIQEYNFFDTSVAAGIPSSVEAFDQDHIEQIAIPDYAMGKYAGYQ 181

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLIS-RRGR 191
                K    SM  +   G ++ +       ++  GD ++      +   K  I+ ++  
Sbjct: 182 DVFFTKINGDSMNNVIPDGSLIAVKKIESCDELKDGDIVV-FSNDNEFSVKRYINDQQNN 240

Query: 192 SIDLMSL--NCCYPVDTVEMSD---IEWIARIL 219
            I       N  +    V   D   ++   +++
Sbjct: 241 RIIFRPDSSNISFTDIVVNYDDTKYVQIYGKVV 273


>gi|54296168|ref|YP_122537.1| hypothetical protein lpp0191 [Legionella pneumophila str. Paris]
 gi|53749953|emb|CAH11338.1| hypothetical protein lpp0191 [Legionella pneumophila str. Paris]
          Length = 215

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 62/206 (30%), Gaps = 25/206 (12%)

Query: 8   KIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++ + +  + ER N LTP+ LARK G+      +     +      P   ++ +I     
Sbjct: 13  QLAQTLTDLIERENKLTPAALARKLGIPTNKITRILNGDVT----DPKASTLLQIANYFG 68

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            TI QLL L       T   E     L                PT               
Sbjct: 69  ITIEQLLGLESIVREGTSITEPLAQSLPI---------YEFSHPTRMTNEWYRWSTN--- 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR--TGDIVAKV 184
                 I               P + +  +LI+N  +  +    +++K          K 
Sbjct: 117 -----EIDGDYFALAIDTDLYEPTFPQNSLLIVNPDMMPDDRSYIVVKRNDSPQHCSIKK 171

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMS 210
            +    +   L  +N   PV+  + +
Sbjct: 172 YVLEGTQGY-LYPINPKLPVELFDRN 196


>gi|46402122|ref|YP_006616.1| Gp36 [Klebsiella phage phiKO2]
 gi|40218266|gb|AAR83052.1| Gp36 [Klebsiella phage phiKO2]
          Length = 202

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +        +T   +A   G+        +R      +  PS E    +       +
Sbjct: 9   GERLKARRLELKMTLKQVAESVGISLPGVQNLERG-----DVMPSLEIGLALAKCLRMPV 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                                 +LY   S        G   +G   +        +    
Sbjct: 64  QW--------------------ILYGTESDPDRVPVIGTTESGPDSDWQPGEPANTERFL 103

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +  Q       T    +   Y+ GD+++ +S +    G+ +L+    G I    L    
Sbjct: 104 PFVSQRNTVYALTVGNQIQHSYQPGDVILADSTLTPVPGEDVLVCDNGGKISILRLARFD 163

Query: 190 GRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
                L   N       + + SD++++ +I+
Sbjct: 164 DERYYLDGANSQ---RVIHDKSDLQFVHQIV 191


>gi|254003147|ref|YP_003052613.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4]
 gi|253987230|gb|ACT52086.1| peptidase S24 and S26 domain protein [Methylovorus sp. SIP3-4]
          Length = 161

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + +   E   P+  +          + +  SM      + DILI+N   +   GD ++
Sbjct: 56  ANDHIE--EEIDPNGYLIDDPNATILIRVKGDSMIEAEIFEDDILIVNRKRRARAGDIVV 113

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
            +   G    K L         L+  N  YPV    +M ++  I  +
Sbjct: 114 AELD-GGFTVKYL-----GKHCLIPANKKYPVIKFQDMQELRLIGVV 154


>gi|255535283|ref|YP_003095654.1| hypothetical protein FIC_01142 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341479|gb|ACU07592.1| hypothetical protein FIC_01142 [Flavobacteriaceae bacterium
           3519-10]
          Length = 257

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 22/226 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+  S     + +  + +R  ++    A    +    + K +    E     P  E + +
Sbjct: 1   MSILS-----DNMRVLRDRLAISQQKTADSLKITRGRYVKYEDGSSE-----PPIEILVR 50

Query: 61  ILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-- 113
           I    N +I       +   P  +          +P++      +     +     G   
Sbjct: 51  IARFFNISIDLLLTVDIRKYPLDNIAALPNNRIVLPIIVDEQGENKIEIVTQKASMGYLT 110

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170
            +      E     +  +    +         SM P Y  G  ++   +     +  G  
Sbjct: 111 GYTDPDYIESLQTLSLPFLRNGKYRAFPAGGDSM-PPYSDGTFIVGKYVERREDLKKGKT 169

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
             +      IV K    +      + S N  Y    +  S++  I 
Sbjct: 170 -YLFITREGIVYKRYAKQNKNGTLISSDNTFYEPYEIPWSEVLEIW 214


>gi|91776134|ref|YP_545890.1| putative prophage repressor [Methylobacillus flagellatus KT]
 gi|91710121|gb|ABE50049.1| putative prophage repressor [Methylobacillus flagellatus KT]
          Length = 194

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            + +    +Q      +  SM       GD++I+      N GD ++      +   K L
Sbjct: 97  DDYLIEKPSQTILITVRGDSMKDAGIFDGDVVIVEKRPFANVGDIVVAILNK-EFTLKTL 155

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G    L+  N  +PV      D E    ++
Sbjct: 156 GK-EGNQFVLIPANKDFPVIR-PEGDFEIFGVVV 187


>gi|282890741|ref|ZP_06299261.1| hypothetical protein pah_c026o068 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499334|gb|EFB41633.1| hypothetical protein pah_c026o068 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 206

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 58/224 (25%), Gaps = 30/224 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++I + I      H  +PS   + +  G                     S  
Sbjct: 1   MKGLTKRQQEILDYIQEFIHSHQFSPSYREIMQNFGYS-------------------SLG 41

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           S+ K L           +   S      + +      +       G         G    
Sbjct: 42  SVSKHLQVLKRKGLLTSEKKCSRSIKPLETKPSNLNQHELELPFIG-----HILAGFPVE 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                +  +    +          + +  S+       GD+LI+ +  +   G+ ++   
Sbjct: 97  IFPKTQSLAVPKFLVQEPDSSYILRARGNSLNDEMISDGDLLIVETGREACSGEWIVALL 156

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              +   K      G+ + L   +       + + D+     ++
Sbjct: 157 NEHETFIKRYYP-EGQYVRLAGHDSAQSPIMIHLDDLVIQGIVV 199


>gi|256819495|ref|YP_003140774.1| putative phage repressor [Capnocytophaga ochracea DSM 7271]
 gi|256581078|gb|ACU92213.1| putative phage repressor [Capnocytophaga ochracea DSM 7271]
          Length = 277

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 60/233 (25%), Gaps = 27/233 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATN 66
            I   +    +   L+        G    +F  + K     G ++    E+I +     N
Sbjct: 3   NIVSRVKDYIDFKGLSVRKFEELVGFSNGAFATQYKNNKSIGSDK---IENILQSFPELN 59

Query: 67  ETICQLLDLPFSDGRTTEKKEK--------------EIPLLYFPPSGSGGFFDSGVFPTG 112
                    P    +   +  +                 ++                   
Sbjct: 60  AEWLLTGKGPMLKNKEIVETPRVEIIKPLKVEGRDLTPKVVVVEEDELFNPIPLVPIYAQ 119

Query: 113 NKWNTVGVPEIRSPHNGIYAIQ----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQV 165
             +              +Y +           +    SM P  + G  ++   + +   +
Sbjct: 120 AGYLNGYEDPEYIKELPMYNLPEMRNGTFRMFQVNGLSMFPTLQDGSYVVGQFVENWEWL 179

Query: 166 NCGDRLLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +     ++      ++ K +    R+  S+   S N  YP  TV   DI+ + 
Sbjct: 180 SDNRVCVVVTERDGVIVKRVLNKIRKYGSLYCKSDNRDYPHITVRAEDIKEVW 232


>gi|213156267|ref|YP_002318687.1| DNA polymerase V component [Acinetobacter baumannii AB0057]
 gi|301348417|ref|ZP_07229158.1| DNA polymerase V component [Acinetobacter baumannii AB056]
 gi|301597848|ref|ZP_07242856.1| DNA polymerase V component [Acinetobacter baumannii AB059]
 gi|332852423|ref|ZP_08434192.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332871004|ref|ZP_08439617.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
 gi|213055427|gb|ACJ40329.1| DNA polymerase V component [Acinetobacter baumannii AB0057]
 gi|332729267|gb|EGJ60609.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
 gi|332731764|gb|EGJ63044.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
          Length = 166

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V        +  +   +      +    SML       D LI++ ++     D ++  
Sbjct: 55  DYVD--RTLDMNEHLIKNEEATFIVRVASLSMLNAGIDIDDELIVDRSLDAKHNDIVVAL 112

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               D   K L+        L + N  Y    +       I  ++
Sbjct: 113 ID-NDFTVKRLMIDENER-WLKAENPDYDDIHLHDGQELIIWGVV 155


>gi|70734371|ref|YP_259105.1| peptidase S24-like domain-containing protein [Pseudomonas
           fluorescens Pf-5]
 gi|68348670|gb|AAY96276.1| peptidase S24-like domain [Pseudomonas fluorescens Pf-5]
          Length = 237

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 60/214 (28%), Gaps = 23/214 (10%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I +  E   ++ S           + +K            P  +S+  + A        L
Sbjct: 33  IIKYLESKGISKSA---------QAVSKWLNGSAI-----PEIDSLTALAAWLGVRREWL 78

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                      ++ + +        +               ++         ++      
Sbjct: 79  EHGVMPALPFEDENQTDEHKASTIQTTRVPVISWVEAINWSSRSLDNETLREKTTLPCPL 138

Query: 132 AIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
           AI       +    SM        Y  G ++ ++  +    G+ ++   P     + KVL
Sbjct: 139 AISKSGFVLQVAGDSMTNYGPGKSYPHGCLIFVDPEVVAKNGECVIASLPNLHHAIFKVL 198

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   G+   L S+N  YP+  +         +++
Sbjct: 199 VEDAGKRF-LKSVNPLYPMIEIT-DGARLCGKVI 230


>gi|27467940|ref|NP_764577.1| lexa repressor [Staphylococcus epidermidis ATCC 12228]
 gi|27315485|gb|AAO04619.1|AE016747_116 lexa repressor [Staphylococcus epidermidis ATCC 12228]
          Length = 77

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
            +      GD +I+ S      GD ++      +   K     +     L   N      
Sbjct: 1   MIEAGILDGDKVIVRSQTIAENGDIIVAMTEDEEATVKRFYKEKN-RYRLQPENSTMEPI 59

Query: 206 TVEMSDIEWIARIL 219
            ++   +  + +++
Sbjct: 60  YLDN--VIVVGKVI 71


>gi|289166242|ref|YP_003456380.1| peptidase, S24 family [Legionella longbeachae NSW150]
 gi|288859415|emb|CBJ13352.1| putative peptidase, S24 family [Legionella longbeachae NSW150]
          Length = 202

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 20/208 (9%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ--LLD 74
            + +N++ S LAR   L   + ++     + G    P   ++  I +  N ++      +
Sbjct: 1   MKENNVSESDLARALNLPYNTIHRL----VSGHTTDPRISTLKSIASYFNVSLDTLLNQN 56

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
               +   T    + +P++ +          +      + W  + +  I +     YA++
Sbjct: 57  QGVPNTLKTHIGPRTVPIVTWEQLSDDELLRTINSLNWDHWLPISLVSIDNLSLNAYALE 116

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSI 193
           ++         SM P +  G   I++   +   GD  L+       +  + LI     SI
Sbjct: 117 SR--------PSMQPRFPIGTFFIIDPDCKPIDGDLILVKIKINNAVSLRELIIDPP-SI 167

Query: 194 DLMS--LNCCYPVDTVEMSDIEWIARIL 219
            L+    N    V     S+ E I  ++
Sbjct: 168 QLLPIIENSD--VLNFNESEHEIIGVVV 193


>gi|158337075|ref|YP_001518250.1| LexA repressor [Acaryochloris marina MBIC11017]
 gi|158307316|gb|ABW28933.1| LexA repressor [Acaryochloris marina MBIC11017]
          Length = 206

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 44/184 (23%), Gaps = 8/184 (4%)

Query: 38  FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
               ++       R        K  A     +  L    + D    + +   I       
Sbjct: 16  VQFIEQHQHAPSIRQMMQAMKLKSPAPVQSRLDHLRKKGYVDWEIGQARTLRIVHPEHLQ 75

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG-IYAIQTQDTRHKTQDTSMLPL-YRKGD 155
           S        G    G         E+          +  +    +    SM+      GD
Sbjct: 76  SDMDQIPILGAIAAGGLIE--PFVEVVDSLEFSPKQLPPKSYALRVNGDSMIDAHITDGD 133

Query: 156 ILILNSAIQVN---CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
           I+I+    +      G  +  +        K     R   + L + N  Y    V  + +
Sbjct: 134 IVIMRPVQEPKTIKNGTIVAARVEGEGTTLKRFHLERNE-VTLEAANLKYQPIKVLATQV 192

Query: 213 EWIA 216
           E   
Sbjct: 193 EIQG 196


>gi|146312264|ref|YP_001177338.1| putative phage repressor [Enterobacter sp. 638]
 gi|145319140|gb|ABP61287.1| putative phage repressor [Enterobacter sp. 638]
          Length = 144

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 5/138 (3%)

Query: 89  EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
              +     S S G          +  + +     ++         +       +  SM 
Sbjct: 1   MYRVEVLDVSASAGTGHIQGSDVIDVIHAIEYNSDQALTLFGGRTSSGVKVINVRGDSMA 60

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                GD++ ++  +    GD + +    G +  K L     + + ++S N  Y    + 
Sbjct: 61  STIEAGDLIFVDVNVNEFDGDGIYVFGFDGKVYVKRLQMIPDQ-LLVISDNPKYREWNIT 119

Query: 209 MS---DIEWIARILWASQ 223
                      ++L  SQ
Sbjct: 120 KENEHRFYVYGKVL-ISQ 136


>gi|114326646|ref|YP_743804.1| putative prophage repressor [Nitrosomonas eutropha C91]
 gi|114309585|gb|ABI60826.1| putative prophage repressor [Nitrosomonas eutropha C91]
          Length = 134

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                + +          + +  SM       GDI++++ A+    G  ++     G+  
Sbjct: 32  RIDLSDELIQHPEATFLMRIKGHSMAMAGIDDGDIVVVDRAVNPEHGKIVIACID-GEFT 90

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K L         L + N  Y     +      +  ++
Sbjct: 91  CKRLY-MMDGITKLQAANPDYEDMVFKDGQTLEVWGVV 127


>gi|125972573|ref|YP_001036483.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC
           27405]
 gi|256005135|ref|ZP_05430104.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM
           2360]
 gi|281416764|ref|ZP_06247784.1| transcriptional regulator, XRE family [Clostridium thermocellum
           JW20]
 gi|125712798|gb|ABN51290.1| transcriptional regulator, XRE family [Clostridium thermocellum
           ATCC 27405]
 gi|255990882|gb|EEU00995.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM
           2360]
 gi|281408166|gb|EFB38424.1| transcriptional regulator, XRE family [Clostridium thermocellum
           JW20]
 gi|316941189|gb|ADU75223.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313]
          Length = 220

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 64/221 (28%), Gaps = 16/221 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            ++   I R+ +   +T   LA+  G+        +        R  + + I K      
Sbjct: 2   NRLGAEIGRLRKELGITQKQLAKLVGVSEGFIIDVESG-----RRILNEDLIKKFSRVLR 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-------FDSGVFPTGNKWNTVG 119
             + +L     +  +    +     +                       +      +   
Sbjct: 57  GEVGKLELYEPNQDKPEPDRNVVKVVEKPVQDIWNDALSGILMTVPVYRYKMDKAVDAKQ 116

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P I++   G    + +      +D  M      K D+ ++     +   D +      G
Sbjct: 117 LPIIQNKVEGF--PKDKVFYLIIEDDDMSGFRILKDDLALVYKTHDI-DKDGIYFVDYKG 173

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               + +       + L+S +     DT+   D+  + R++
Sbjct: 174 KRTVRQIKDIGNGKLLLVSNSGRLITDTIYRKDLNVLGRLI 214


>gi|322514358|ref|ZP_08067408.1| phage transcriptional regulator [Actinobacillus ureae ATCC 25976]
 gi|322119747|gb|EFX91787.1| phage transcriptional regulator [Actinobacillus ureae ATCC 25976]
          Length = 227

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 20/205 (9%)

Query: 29  RKAGLDPTSF-NKSKRFGIEG---------RNRWPSTESIFKILAATNETICQLLDLPFS 78
           R   +   +     ++   +G             P +  +      +  ++ Q   +P  
Sbjct: 22  RATNITRKAIKEGWEKREAQGIKGGGFEYHYTSLPKSVQLALGFEPSMNSLKQSKPMPVL 81

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
               +    + +P      S        G +      + +G+ +      G Y  Q    
Sbjct: 82  AVAQSADSLERVPFYNITASVGFTAISEGTYVP---DDYIGLSKRWLNLRGFYLNQ--LA 136

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                  SM P    GD+L++N   +     ++ +      I  K +       I L+S 
Sbjct: 137 FITASGDSMYPTISDGDMLLVNLGAKQPKDGKIYVLRSGEQIWVKRVQGIING-IRLISD 195

Query: 199 NCC-YPVD--TVEMS-DIEWIARIL 219
           N   Y         S D E I +++
Sbjct: 196 NKEIYSPMDAIFNDSLDFEVIGQVV 220


>gi|320450736|ref|YP_004202832.1| LexA repressor [Thermus scotoductus SA-01]
 gi|320150905|gb|ADW22283.1| LexA repressor [Thermus scotoductus SA-01]
          Length = 115

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
           +T     K    SM PL  +GD  I+++      G  + +      IV K L  R  + +
Sbjct: 13  ETSLFAVKITGNSMEPLLYEGDYAIVDTETPPLTGAIVAVGIPGDGIVVKKLAER-NKQL 71

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
            L S+N  Y    +   D +    ++
Sbjct: 72  YLESVNPLYEDIPLP-EDAKIWGPVI 96


>gi|313159646|gb|EFR59004.1| peptidase S24-like protein [Alistipes sp. HGB5]
          Length = 210

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 11/204 (5%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           +T   LA+  G+   + +  +        R  +   + ++            ++  ++  
Sbjct: 1   MTQEQLAQHLGIGKAALSMIETGKAGLSARNRNI-LVQELNVNPEWLESGKGNMFNAEPD 59

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
            T  + +    L            +              P           +   D    
Sbjct: 60  LTAYRLRTDNSLPLQSVPLYSIEGTAGLVPLFTDQAQAKPVNFIHIPN---LPKCDGAIY 116

Query: 142 TQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGD---IVAKVLIS-RRGRSID 194
               SM PL + GDI++         +  GD  L+         +  K +    R   + 
Sbjct: 117 IVGDSMYPLLKSGDIVLYKQLGNIDDIFWGDMYLLSIDIDGEEYVTVKYIQKSDREGYVK 176

Query: 195 LMSLNCCYPVDTVEMSDIEWIARI 218
           L+S N  +    V +S I  IA +
Sbjct: 177 LVSQNPHHADKEVALSRIRAIALV 200


>gi|291086775|ref|ZP_06344425.2| repressor LexA [Clostridium sp. M62/1]
 gi|291076918|gb|EFE14282.1| repressor LexA [Clostridium sp. M62/1]
          Length = 206

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 62/227 (27%), Gaps = 41/227 (18%)

Query: 1   MTSFS-HKKIWEAI----DRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWP 53
           MT  S + ++  AI    D+    H+ +PS   +A+  G+   +  +             
Sbjct: 1   MTMRSKNPEVMNAICTFVDQYYREHHASPSVNEIAQGVGVSKATSYRY------------ 48

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
                            + +         T++  K     +  P               +
Sbjct: 49  -----------LVAMNERGMLSYDGKTIVTKQVGKCTSGYFSAPVVGSIRCGDPEREEES 97

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
               V +P+           + +    + +  SM+       D++++        GD ++
Sbjct: 98  VEEYVSLPKSIFG-------EGKFYILRAKGDSMVDAGIEDEDLIVIRIQDTAAVGDIVV 150

Query: 173 IKPRTGDIVAKVL--ISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIA 216
                 +   K    I      + L   N   YP   + +  +    
Sbjct: 151 ALDEDNENTLKTFGGIDEENGDVILRYANQTKYPDKEIRVKQLIVQG 197


>gi|145218945|ref|YP_001129654.1| putative prophage repressor [Prosthecochloris vibrioformis DSM 265]
 gi|145205109|gb|ABP36152.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Chlorobium phaeovibrioides DSM 265]
          Length = 151

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
           P  +             +  +          + + +SM+      GD+LI++ A++   G
Sbjct: 40  PAEDHEEM-----SLDLNKALIRHPAATFYARVKGSSMMDAGIEDGDLLIIDKALEPKDG 94

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D  +     G+   K +       + L+  N  +    V   +   +  I+
Sbjct: 95  DVAVCFID-GEFTVKRI-RLGDGDLFLVPANPLFQPVRVTEENEFLVWGIV 143


>gi|229827191|ref|ZP_04453260.1| hypothetical protein GCWU000182_02577 [Abiotrophia defectiva ATCC
           49176]
 gi|229788809|gb|EEP24923.1| hypothetical protein GCWU000182_02577 [Abiotrophia defectiva ATCC
           49176]
          Length = 146

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                     +    E    ++     +  D        SM PLY   +++ +     + 
Sbjct: 34  YYEAVSAGNGSFLDSEDYEMYSSADIPEKADFGVYISGDSMEPLYHNRELIWIEQTEWLE 93

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
            G+  +     G+   K   + R  +  L+SLN  YP   +  S   +   R+L
Sbjct: 94  NGEIGIFYFD-GNAYVKKFQNNRRGAY-LVSLNKDYPPIPITESCSFKIFGRVL 145


>gi|192291732|ref|YP_001992337.1| phage repressor [Rhodopseudomonas palustris TIE-1]
 gi|192285481|gb|ACF01862.1| putative phage repressor [Rhodopseudomonas palustris TIE-1]
          Length = 214

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 66/215 (30%), Gaps = 41/215 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  + +  + T + LA +      + ++          R P  + +  +   +       
Sbjct: 5   IRAILDARDWTQADLAARLRTTQVTVSRWLDGT---EPRGPMRDRLRDLAEESG------ 55

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                      + +   +  +                   +    + +P         Y 
Sbjct: 56  --------LVPQARANHVIKIMGRVGAGAIIDPDYEQTPEDGLEQIELP---------YP 98

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTGDIVAKVLISR 188
           I +     +   TSM+P Y  G+IL++     V+     G   +++   G  + K ++  
Sbjct: 99  IGSDLIGFEVSGTSMMPKYDPGEILVVQREQPVSFDSMIGQYAVVRTDDGRRLVKRVMPG 158

Query: 189 RGRSID-LMSLNCCYPVDTVEMSDIEWIARILWAS 222
              ++  L S N          ++    AR++W S
Sbjct: 159 PKSNLYNLESAN----------AETIVGARLVWGS 183


>gi|317052815|ref|YP_004119581.1| peptidase S24/S26A/S26B [Pantoea sp. At-9b]
 gi|316953555|gb|ADU73025.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. At-9b]
          Length = 168

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 9/158 (5%)

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
              +      +     G T     +                    FP+    + V     
Sbjct: 9   PLYDRQSGHAESETLPGPTGMTLLRPAEHRVQLGIPFYADLCPAGFPSPAA-DYVE--SE 65

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +             +   +SM       GD+++++ A +   GD ++I    G+   
Sbjct: 66  LDLNELCIRRPAASYFVRASGSSMEDLGLFDGDVMVVDRAEEACHGD-VVIAEVNGEFTV 124

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILW 220
           K L       + L+ ++  YP        ++ +  + W
Sbjct: 125 KRLQLHP--RLALLPMSPAYPAIY--PESLQLMGVVTW 158


>gi|223951440|gb|ACN29685.1| UmuD [Acinetobacter baumannii]
          Length = 198

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 92  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K L+         + L + N  Y    +E      I  ++
Sbjct: 151 NDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195


>gi|209901157|ref|YP_002286938.1| MucA protein [Klebsiella pneumoniae]
 gi|209574108|gb|ACI62996.1| MucA protein [Klebsiella pneumoniae]
          Length = 152

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H       +     +   +SM       GD+L+++ ++  + G  ++      +   K L
Sbjct: 49  HEYCVRHPSATYFLRVSGSSMEDGRIHDGDVLVVDRSLTASHGSIVVACI-HNEFTVKRL 107

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           + R      LM +N  +PV  ++   +   I  ++
Sbjct: 108 LLRP--RPCLMPMNKDFPVYYIDPDNESVEIWGVV 140


>gi|4456755|emb|CAB37317.1| RulA [Pseudomonas syringae pv. tomato]
          Length = 120

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +           + A        K    SM         +++++ + + + G  ++  
Sbjct: 12  DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVVDRSRKPSSGSIVIAA 69

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               + + K+LI + G  + L S N  YP   +   +   I  ++
Sbjct: 70  LN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 112


>gi|11640741|gb|AAG39353.1| RulA [Pseudomonas syringae pv. tomato]
          Length = 141

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 8/122 (6%)

Query: 102 GFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDIL 157
             F +   P G      +             + A        K    SM         ++
Sbjct: 16  IPFYTFKIPAGFPNPAADHTEQDSSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLV 73

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +++ + + + G  ++      + + K+LI + G  + L S N  YP   +   +   I  
Sbjct: 74  VVDRSRKPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWG 131

Query: 218 IL 219
           ++
Sbjct: 132 VV 133


>gi|260221077|emb|CBA29281.1| Protein umuD [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 147

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E       +          +    SM        DIL+++ AI+      ++     G+ 
Sbjct: 41  ERIDLSKVLITHPQATFLQRVSGHSMKDAGIFDNDILVIDRAIKPRHKMIVVAVVD-GEF 99

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L  +R   + L + N  YP    +      I  ++
Sbjct: 100 TVKQLY-QRAGRVKLQAANPTYPDIVPKEGQTIEIWGVV 137


>gi|187775938|ref|ZP_02799174.2| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4196]
 gi|188025175|ref|ZP_02776553.2| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4113]
 gi|189010343|ref|ZP_02806584.2| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4076]
 gi|189404535|ref|ZP_02790113.2| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4501]
 gi|195940417|ref|ZP_03085799.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4024]
 gi|208810485|ref|ZP_03252361.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4206]
 gi|208817247|ref|ZP_03258324.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821150|ref|ZP_03261470.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4042]
 gi|187770111|gb|EDU33955.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014462|gb|EDU52584.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000840|gb|EDU69826.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4076]
 gi|189365015|gb|EDU83431.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4501]
 gi|208725001|gb|EDZ74708.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4206]
 gi|208730668|gb|EDZ79359.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741273|gb|EDZ88955.1| putative repressor protein encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EC4042]
          Length = 199

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 21/190 (11%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTT 83
             L    G    S ++    G    +R+ S  S+ KIL    N  +             +
Sbjct: 9   KDLVNATGASKGSVSQWMNGGGAPSSRYIS--SLAKILKVNENWLLNGGELNTGDSLDLS 66

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
               K +PLL    + S               + +    I S    +  I         +
Sbjct: 67  LPPIKTVPLLSLQQAASWS-------------DYMKNSSITSCVQLVGEIPANTFAVVLE 113

Query: 144 DTSMLPL-----YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
             SM           G  + ++    V  G+ +L  P+         +   G  I L+  
Sbjct: 114 SDSMSTSGGGVSIPNGSTVFVDPDRIVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPT 173

Query: 199 NCCYPVDTVE 208
           N  YP   ++
Sbjct: 174 NPRYPSIMLD 183


>gi|315224934|ref|ZP_07866753.1| transcriptional regulator [Capnocytophaga ochracea F0287]
 gi|314945047|gb|EFS97077.1| transcriptional regulator [Capnocytophaga ochracea F0287]
          Length = 276

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 60/234 (25%), Gaps = 32/234 (13%)

Query: 9   IWEAIDRMAERH-NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I  + +   N   S  A K G++  +               P    + KI+     
Sbjct: 4   IKFRIKELVDHFSNGNNSDFANKLGVNEANIRNYIAGT------EPKFNVLEKIVTTFEV 57

Query: 68  TICQLLDLPFSDGRTTEKKEK----------------EIPLLYFPPSGSGGFFDSGVFPT 111
               LL       +  E  E                    ++                  
Sbjct: 58  NYEWLLTGKGPMLKNKEIVETPRVEIIKPLKVEGRDLTPKVVVVEEDELFNPIPLVPIYA 117

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQ----TQDTRHKTQDTSMLPLYRKGDILI---LNSAIQ 164
              +              +Y +           +    SM P  + G  ++   + +   
Sbjct: 118 QAGYLNGYEDPEYIKELPMYNLPEMRNGTFRMFQVNGLSMFPTLQDGSYVVGQFVENWEW 177

Query: 165 VNCGDRLLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           ++     ++      ++ K +    R+  S+   S N  YP  TV   DI+ + 
Sbjct: 178 LSDNRVCVVVTERDGVIVKRVLNKIRKYGSLYCKSDNRDYPHITVRAEDIKEVW 231


>gi|167907362|ref|ZP_02494567.1| helix-turn-helix motif:Peptidase S24, S26A and S26B [Burkholderia
           pseudomallei NCTC 13177]
          Length = 153

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 5/108 (4%)

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
            +   +   RS +        +    K    SM P    GD +++NSA            
Sbjct: 41  EDHAPIVFHRSWYESNGYDPEKLLAIKVAGASMEPGLYDGDWVVVNSADTSPRDGVAFAL 100

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219
              G++V K L           S N     Y    +   D   I R++
Sbjct: 101 SFDGEVVIKRLFR-TDGHWVAASDNQDKRIYRDRPLN-GDTFIIGRVI 146


>gi|184157751|ref|YP_001846090.1| SOS-response transcriptional repressor [Acinetobacter baumannii
           ACICU]
 gi|332876437|ref|ZP_08444204.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
 gi|183209345|gb|ACC56743.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidases) [Acinetobacter baumannii ACICU]
 gi|322508059|gb|ADX03513.1| Component of DNA polymerase V [Acinetobacter baumannii 1656-2]
 gi|323517643|gb|ADX92024.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidases) [Acinetobacter baumannii TCDC-AB0715]
 gi|332735295|gb|EGJ66355.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
          Length = 203

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 92  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K L+         + L + N  Y    +E      I  ++
Sbjct: 151 NDFTVKRLMIDTQFHPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195


>gi|113972116|ref|YP_735909.1| LexA repressor [Shewanella sp. MR-4]
 gi|123324512|sp|Q0HDL5|LEXA_SHESM RecName: Full=LexA repressor
 gi|113886800|gb|ABI40852.1| SOS-response transcriptional repressor, LexA [Shewanella sp. MR-4]
          Length = 206

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 58/215 (26%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A + G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIAETGMPPTRAEIATRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E+   E  L                   G    
Sbjct: 45  EHLKALAKKGCIEIMPGTSRGIRLPVEEEDNSESGLPLIGQ-----------VAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + +  SM  +   +GD+L ++   Q   G  + +  
Sbjct: 94  AQEHVEQYYQVDPSMFHPAADFLLRVRGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L + N  Y    V++S
Sbjct: 153 VDDDVTVKRFEKK-GNLVYLHAENEDYSPIKVDLS 186


>gi|95929179|ref|ZP_01311923.1| putative prophage repressor [Desulfuromonas acetoxidans DSM 684]
 gi|95134677|gb|EAT16332.1| putative prophage repressor [Desulfuromonas acetoxidans DSM 684]
          Length = 143

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +             + Q  SM       GD+L+++ ++    GD ++     
Sbjct: 35  YCERTLDLNALCIQKPAATYFVRVQGDSMIEAGIFPGDVLVVDRSLAAQHGDIVIAALN- 93

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIA 216
           G++  K L      +  L+ +N  +    +   +++E   
Sbjct: 94  GELTVKKL--ETSSTTRLVPMNKQHQAIEIPEGAELEIFG 131


>gi|293395527|ref|ZP_06639810.1| SOS mutagenesis and repair protein UmuD [Serratia odorifera DSM
           4582]
 gi|291421846|gb|EFE95092.1| SOS mutagenesis and repair protein UmuD [Serratia odorifera DSM
           4582]
          Length = 139

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V           +          +    SM+      GD+L+++SA+    G+ ++  
Sbjct: 32  DYVE--SRLDIGKLLVRHPNATYFVRASGNSMIDANIHDGDLLVVDSALNAEHGNIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
              G+   K L     R   L+++N  Y    +     +E    +
Sbjct: 90  ID-GEFTVKRLQLHPTR--QLVAMNPAYAPIILAEDATLEIFGVV 131


>gi|300776584|ref|ZP_07086442.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
 gi|300502094|gb|EFK33234.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
          Length = 251

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 58/211 (27%), Gaps = 16/211 (7%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-----IC 70
           +  + NL+   +A    +    ++K +          P  + + KI    N +       
Sbjct: 4   LRGKLNLSQQKVADDLLITRGRYSKYEDDAA-----APPLDILVKISRYYNISIDLLLTI 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIRSPHN 128
            +      +          +P+                   G  N +      E     +
Sbjct: 59  NVSKYSIDEIMELPDNRIVLPIRVDQDGNDQIEIIPQKASMGYLNGYGDPEYIESLETIS 118

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVAKVL 185
             +    +         SM P Y+ G  ++   + +   +      +       I  K  
Sbjct: 119 LPFLKGGKFRAFPADGDSM-PPYKNGTYIVGKYVENLSDLKTDRTYIFITTNDGISYKRF 177

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                 SI + + N  Y    + +S+I+ I 
Sbjct: 178 QFHEADSIWVKADNQFYEPYKIPLSEIKEIW 208


>gi|126641435|ref|YP_001084419.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978]
          Length = 176

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 65  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 123

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K LI         + L + N  Y    +E      I  ++
Sbjct: 124 NDFTVKRLIIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 168


>gi|157146086|ref|YP_001453405.1| DNA polymerase V subunit UmuD [Citrobacter koseri ATCC BAA-895]
 gi|157083291|gb|ABV12969.1| hypothetical protein CKO_01842 [Citrobacter koseri ATCC BAA-895]
          Length = 138

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 14/138 (10%)

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
           T    + + L  F      GF         ++ +   +              +     K 
Sbjct: 5   TPTDLRHVALPMFSDLVQCGFPSPAQDYVESRIDLNELLVRH---------PSATYFVKA 55

Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              SM      +GD+L+++S+ +   GD ++     G+   K L+      + L   N  
Sbjct: 56  TGDSMRDAGIGEGDLLVVDSSRKAGHGDIVIAAVD-GEFTVKRLLLHPA--VMLKPENSV 112

Query: 202 YPVDTVEMSD-IEWIARI 218
           Y    +   D +E    +
Sbjct: 113 YKPIMIGSEDNLEVFGVV 130


>gi|11640717|gb|AAG39341.1| RulA [Pseudomonas syringae pv. lachrymans]
          Length = 141

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 8/129 (6%)

Query: 95  FPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150
              SG    F S   P G      + +           + A        K    SM    
Sbjct: 9   LSESGKVIPFYSFKIPAGFPNPAADHIEQDFSFDRLMDLRA--PHIYAAKIDGDSMEGAK 66

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
                +++++ +   + G  ++      + + K+LI + G  + L S N  YP   +   
Sbjct: 67  IFHDSLVVVDRSRTPSSGSIVIAALN-NEPLCKILILQ-GDHVVLKSANPAYPARHILEG 124

Query: 211 DIEWIARIL 219
           D   I  ++
Sbjct: 125 DELSIWGVV 133


>gi|239503593|ref|ZP_04662903.1| Protein samA [Acinetobacter baumannii AB900]
 gi|260550570|ref|ZP_05824779.1| samA [Acinetobacter sp. RUH2624]
 gi|260555382|ref|ZP_05827603.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
 gi|260406281|gb|EEW99764.1| samA [Acinetobacter sp. RUH2624]
 gi|260411924|gb|EEX05221.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
          Length = 203

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 92  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALID- 150

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K L+         + L + N  Y    +E      I  ++
Sbjct: 151 NDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195


>gi|304393973|ref|ZP_07375897.1| XRE family transcriptional regulator [Ahrensia sp. R2A130]
 gi|303293948|gb|EFL88324.1| XRE family transcriptional regulator [Ahrensia sp. R2A130]
          Length = 271

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 67/215 (31%), Gaps = 27/215 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + R         +  A +A     + N+      E  NR  S +       A   +  
Sbjct: 77  DRLQRARIDGGFPKAADAARA---HRTINQHTLTSNENGNREISKKMAEVYGQAFGVSAA 133

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            +L     +    E   +         +GS  +      P     + V  P   +     
Sbjct: 134 WILYGDTKNSLQGEVPLRGK-----VGAGSEVYVFDDDHPM----DYVEAPPHAT----- 179

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDIVAKVLIS 187
                  +  +    SM P+Y    I+  +  +         R ++K   G I+ K L  
Sbjct: 180 ----ANTSALEVDGDSMFPVYEDRAIIYYSDNVTDPSVMLNKRCVVKLANGRILVKKLRR 235

Query: 188 RRGRSID-LMSLNCCYPVDTVEMSDIEWIARILWA 221
                +  L S N  +P    ++  +EW+A+I W 
Sbjct: 236 GTTDELWNLDSFNPAFPTMEDQI--VEWVAKIDWV 268


>gi|291613300|ref|YP_003523457.1| peptidase S24/S26A/S26B, conserved region [Sideroxydans
           lithotrophicus ES-1]
 gi|291583412|gb|ADE11070.1| Peptidase S24/S26A/S26B, conserved region [Sideroxydans
           lithotrophicus ES-1]
          Length = 159

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 6/109 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172
             + V      S    +   +      +    SM       GD+L+++ ++    G  ++
Sbjct: 50  ADDYVE--RRLSLDEHLIQHRESTFFMRVAGHSMRDLGIFDGDLLVVDRSVPATHGCVVV 107

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220
                G+   K L+      + L + +  YP   +       I  ++ W
Sbjct: 108 AVID-GEFTVKQLLYTAQGKV-LRAAHPDYPDIAITAEHDFSIWGVVQW 154


>gi|332701451|ref|ZP_08421539.1| CI repressor [Desulfovibrio africanus str. Walvis Bay]
 gi|332551600|gb|EGJ48644.1| CI repressor [Desulfovibrio africanus str. Walvis Bay]
          Length = 223

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 70/220 (31%), Gaps = 14/220 (6%)

Query: 12  AIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            ++R+ +   + T   L +  G+  +S + +KR G          + + K+         
Sbjct: 8   FLERVRKATGVKTQVELGKVLGIRQSSISDAKRRGSVP------ADWLMKLFRTYGLNPD 61

Query: 71  QLLDLPFSDG-RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            LL+       +      K +         S           G +          + H  
Sbjct: 62  WLLEGASPVYLKPGASPSKGLEDEAGAGQPSSSRLVGVSSMLGREDENGQWQPEWTFHME 121

Query: 130 IYAI--QTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLI 186
           I A+  +      +     M P+  KG  + +++    +  G+          ++ K + 
Sbjct: 122 IPAMFHRPSVHVMQVDSVDMAPIILKGAFVGIDTMRRNIVDGEIYAFHVPREGLIIKRVF 181

Query: 187 SRRGR-SIDLMSLNCCYPVDTVE--MSDIEWIARILWASQ 223
                 S  L S++  +   T+   + +   + R++W  Q
Sbjct: 182 HDMHSASYRLASMDPRFSETTLTQALKEQRCVGRVVWVMQ 221


>gi|308233430|ref|ZP_07664167.1| SOS-response transcriptional repressor, LexA [Atopobium vaginae DSM
           15829]
          Length = 186

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 51/201 (25%), Gaps = 31/201 (15%)

Query: 25  SGLARKAGL-DPTSFNKSKRFGIEGR-----NRWPSTESIFKILAATNETICQLLDLPFS 78
             +    GL  P++ +       +        + P    + K++    E           
Sbjct: 1   REIGEAVGLASPSTVHMHLHALQDLGYIHRDPKKPRALVLPKLVQDEGEQH--------- 51

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
               + + +     +   P          +    N  + + VP   S  +          
Sbjct: 52  ----SVENDNVELNVTILPVVGRVAAGVPILAEQNIEDRLAVPTSISSDSSS-------F 100

Query: 139 RHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
             K Q  SM+      GD +++        G+ ++      +   K         I L  
Sbjct: 101 ILKVQGESMINAGIFDGDYVVVKEQHDARNGEIVIAMID-NECTVKRFFKES-SYIRLQP 158

Query: 198 LNCCYPVDTVEMSDIEWIARI 218
            N        +      I ++
Sbjct: 159 ENDTMKPIIAKHP--TIIGKV 177


>gi|325121835|gb|ADY81358.1| component of DNA polymerase V [Acinetobacter calcoaceticus PHEA-2]
          Length = 203

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 92  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDINDPLIVDRSIPAKSGDIVIALID- 150

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K L+         + L + N  Y    +E      I  ++
Sbjct: 151 NDFTVKRLMIDSQFHPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195


>gi|308048864|ref|YP_003912430.1| XRE family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631054|gb|ADN75356.1| transcriptional regulator, XRE family with cupin sensor [Ferrimonas
           balearica DSM 9799]
          Length = 180

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 53/192 (27%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++  +  L+   LA++ G+     ++ ++  +      PS  S+ KIL     
Sbjct: 2   DIGNRLRQLRTQAGLSQRELAKRTGVTNGFISQVEKNSV-----SPSVASLKKILDGLPI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++    D           +  E+P +   P        +             +P      
Sbjct: 57  SLTNFFDSEERQPAQVVFRADEMPNIGSGPIRYKLVGHAVRDRA-IGMLHETMPAGSDTG 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +     ++          L         + +   ++  GD      +           
Sbjct: 116 KEMLTHDGEECGVVIAGQLEL--------TVGDEVNELGPGDGYYFSSQRPH----RFRV 163

Query: 188 RRGRSIDLMSLN 199
                + L+S N
Sbjct: 164 LGDEPVVLVSAN 175


>gi|307274764|ref|ZP_07555934.1| peptidase S24-like domain protein [Enterococcus faecalis TX2134]
 gi|306508586|gb|EFM77686.1| peptidase S24-like domain protein [Enterococcus faecalis TX2134]
          Length = 244

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 69/218 (31%), Gaps = 29/218 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I ++A+  N+ P  L   +  D    ++      +         S  K++   +    
Sbjct: 46  ENIIKIADGLNMKPEDLLNLSNEDSDIISRITTILNQ-------LTSDRKLVVLNSAKQQ 98

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                   +   +   +K + L     +G G        P      T+ +PE   P +  
Sbjct: 99  LKEQKQEKNNVISLPVKKSVNLYGIMTAGYGTINYDKCQP----IETIEIPENDIPKDYD 154

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
            A        +    SM P Y  G I+ +    ++  G         G+   K +   + 
Sbjct: 155 LA-------FRVSGDSMYPTYEDGQIIFVRKQSEIEQGMIG-CVEINGNAFIKRIYKEKD 206

Query: 191 RSIDLMSLNCC--------YPV-DTVEMSDIEWIARIL 219
             +  +S N          +P   T +  +I  I +++
Sbjct: 207 -RLRFVSFNTDVDKDGNRLFPDFYTSKTDEIYIIGKVV 243


>gi|308171850|ref|YP_003915180.1| UmuD-like protein [Arthrobacter arilaitensis Re117]
 gi|307743222|emb|CBQ74045.1| UmuD-like protein [Arthrobacter arilaitensis Re117]
          Length = 143

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                 +   Q      +    SM       GD LI++ ++Q   G  ++     G++  
Sbjct: 42  IDLSEMLIRDQVSTFIVRVSGESMQGAGISDGDELIVDRSVQPRDGHVVIAVID-GEMTV 100

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEW 214
           K L +     + L + N  YP   V E+SD   
Sbjct: 101 KRLSTGPAG-VVLKAENPDYPDLRVAELSDFRI 132


>gi|290474290|ref|YP_003467167.1| putative Helix-turn-helix motif:Peptidase S24, S26A and S26B
           [Xenorhabdus bovienii SS-2004]
 gi|289173600|emb|CBJ80380.1| putative Helix-turn-helix motif:Peptidase S24, S26A and S26B
           [Xenorhabdus bovienii SS-2004]
          Length = 203

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 60/215 (27%), Gaps = 28/215 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +        LT S LA+KAG+  +   K          R      + K L    E 
Sbjct: 3   LADRLKEAMADKGLTQSALAKKAGMAQSMIWKLLSGNAVKTGR---LVDLAKALDVRPEW 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +          G T     +                    F     +             
Sbjct: 60  LSDGSGHKSQSGDTDFA-VRHNNRYVPVKIYEAEQETPEFFMVPAFFEQ----------- 107

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
              A       ++    +      +G ++++++   +   D +  +      V      +
Sbjct: 108 --QAPVESCRAYRITQNTGCTEAPEGTVIVVDTQENIANDDLVYARIGEHYSV---YRYK 162

Query: 189 RGRSIDLMSLNCCYPVDTVEM----SDIEWIARIL 219
           +G ++  +S+        + +    SD+E +  I+
Sbjct: 163 QGGAVSYLSV----DDTRIPLIPLSSDMEIVGVIV 193


>gi|124023302|ref|YP_001017609.1| SOS mutagenesis protein UmuD [Prochlorococcus marinus str. MIT
           9303]
 gi|123963588|gb|ABM78344.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9303]
          Length = 158

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + + +      +  +          +    SM  +    GD+L+++ ++    G  ++
Sbjct: 34  AEDYIEI--GIDLNEQLIRHPASTFFLRVSGHSMTGVGIHNGDLLVVDRSLDARPGHIVV 91

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEW 214
                G    K L+  R   + L + +  YP   +    D++ 
Sbjct: 92  AILD-GAFTLKQLVRHR-GVLRLEAAHSNYPPLDLARFGDVQI 132


>gi|294789817|ref|ZP_06755046.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
 gi|294482259|gb|EFG29957.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
          Length = 201

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 60/220 (27%), Gaps = 29/220 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M +  +      ++ + + +NL T   LA  A +     N+  +            + + 
Sbjct: 1   MNTLKN-----RLEEVMKEYNLKTQQDLANFAEVSKGLVNQWFKGET-----GLGAKPLI 50

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                T+ +   L D      R T      +        G    F               
Sbjct: 51  AFEKKTHFSTQWLADGKGKKYRDTNINATGVKFGDSATIGDSNNFSIIQNS--------- 101

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                        I              LP   +G  + ++         ++ +    G 
Sbjct: 102 --GSLKNKESHSQISDNAFCQP------LPHIPEGSEIWIDENQTDIVDGKIYLVECGGK 153

Query: 180 IVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              + + S+   + I L + N  +P   + M  ++ I R+
Sbjct: 154 RYYRRVFSQPETQEILLNTDNPLFPNKKMPMDKVKIIGRV 193


>gi|293608427|ref|ZP_06690730.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829000|gb|EFF87362.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 203

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 92  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDINDPLIVDRSIPAKSGDIVIALID- 150

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K L+         + L + N  Y    +E      I  ++
Sbjct: 151 NDFTVKRLMIDSQFHPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195


>gi|110637895|ref|YP_678102.1| SOS mutagenesis protein UmuD [Cytophaga hutchinsonii ATCC 33406]
 gi|110280576|gb|ABG58762.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 142

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + + +      +  +          + +  SM+     +GD+LI++ + ++      +  
Sbjct: 32  DYLDL--SIDLNRELITNPNATFCGRVKGNSMIDAGIEEGDVLIIDRSKELTDNSIAVCF 89

Query: 175 PRTGDIVAKVL-ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              G+   K + + +  + I LM  N  +    V   +   I  I+
Sbjct: 90  LD-GEFTVKRVKVYKSKKEIHLMPSNKNFKPIIVTPDNEFTIWGIV 134


>gi|296284322|ref|ZP_06862320.1| prophage MuMc02-like, S24 family peptidase [Citromicrobium
           bathyomarinum JL354]
          Length = 143

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLISRRG 190
           A   Q      Q  SM P    GD+++++ +       D +         + K L     
Sbjct: 50  ARPGQLYWAIGQGDSMEPTISSGDLILIDRSQDTMFDRDLIWACTVGDFGMIKRL-RPTR 108

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + ++S N   P D     ++  I R++
Sbjct: 109 EGVTILSDNPAVPDDFAVDDELRIIGRVI 137


>gi|300779435|ref|ZP_07089293.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300504945|gb|EFK36085.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 317

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 19/223 (8%)

Query: 2   TSFSHKKIWEAIDRMAERH--NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              +   + + I  +  +    L+   LA +  L   S+ K +          P  + + 
Sbjct: 58  KMSTISILADNIRYLRMQQIPELSQQQLADRLFLTRVSYAKYETAKA-----SPPLDVLL 112

Query: 60  KILAATNETIC-----QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN- 113
            I    + +        L      +          +P+       +           G  
Sbjct: 113 AISRYYHISTDLLLTVDLRKYKLQEMLNLPDNRILLPIKTDSVGENKIEIIPYKASMGYL 172

Query: 114 -KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGD 169
             +      +     +  +    +         SM P Y+ G  ++   + +   +  G 
Sbjct: 173 TGYADPEYIDSLQTMSLPFLHNGKYRAFPVVGDSM-PPYKDGTYVVGKYIENIKDIKIGK 231

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
             ++  R+G    K +      SI + + N  Y    +  SD+
Sbjct: 232 THVLITRSG-FTFKRIEKINDNSITVGADNTFYDSYDIPFSDL 273


>gi|146340562|ref|YP_001205610.1| hypothetical protein BRADO3606 [Bradyrhizobium sp. ORS278]
 gi|146193368|emb|CAL77384.1| hypothetical protein; putative LexA, SOS-response transcriptional
           repressor domain fragment [Bradyrhizobium sp. ORS278]
          Length = 219

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 65/224 (29%), Gaps = 18/224 (8%)

Query: 1   MTSFS-HKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M      ++ W  +    +       S LA   G+   + ++         NR  S   +
Sbjct: 1   MKDLQLQQRRW--LSEQLKARGRGARSALANHLGIRTDAISRMTNLDGAKENREISLAEL 58

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNT 117
             +     +   +   L  +  +  + +++    +   P            P      + 
Sbjct: 59  IGMAEFFED---EPPGLKEARSKAKDIRDRTEAKITRVPLLDTVPAGKLAAPMSQLPIDQ 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           V +             +        +  SM  +  +   +I+N A +    ++  +    
Sbjct: 116 VPL------LAFADLGRGDFIALTVRGDSMDRISPESSTIIVNKADRTLVSNKAYVFCDR 169

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARI 218
           G++  K L       +  +S N  +    +     ++   + R+
Sbjct: 170 GEVTFK-LWKPDPPRLAPLSTNPVHEPRYLKTKAEAERMVVGRV 212


>gi|56807692|ref|ZP_00365571.1| COG2932: Predicted transcriptional regulator [Streptococcus
           pyogenes M49 591]
          Length = 203

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/196 (10%), Positives = 49/196 (25%), Gaps = 15/196 (7%)

Query: 37  SFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           + +  ++       +  +       + +        L  P++    + K++         
Sbjct: 2   TISNWEKGKNIPNEKHLNALLHLFNVTSDYFDPNYRLLTPYNQLTISNKEKVIGYSERLL 61

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQD 144
                      +      +       + +     Y                 D       
Sbjct: 62  NHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGYSYFGDGNFDVVFYDEQLEYDFASWVFG 121

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P Y  G+++++        G  +      G    K +       + L+SLN  Y  
Sbjct: 122 DSMEPTYLNGEVVLIKQNSFDYDG-AIYAVEWDGQTYIKKVFR-EDEGLRLVSLNKKYSD 179

Query: 205 DTVE-MSDIEWIARIL 219
                  +   I +I+
Sbjct: 180 KFAPYSEEPRIIGKII 195


>gi|262373008|ref|ZP_06066287.1| LexA repressor [Acinetobacter junii SH205]
 gi|262313033|gb|EEY94118.1| LexA repressor [Acinetobacter junii SH205]
          Length = 203

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V +    +  +   +      K    SML       D L+++ +I    GD ++      
Sbjct: 93  VEQALDLNEFLIRNENSTFIVKANSLSMLDAGIDIDDPLVVDRSIPAKSGDIVIALID-N 151

Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D   K L          + L + N  Y    ++      I  ++
Sbjct: 152 DFTVKRLMIDHHFSPPKVWLKAENPDYQNIYIQEGQELVIWGVV 195


>gi|254436499|ref|ZP_05049993.1| hypothetical protein OA307_1369 [Octadecabacter antarcticus 307]
 gi|198251945|gb|EDY76259.1| hypothetical protein OA307_1369 [Octadecabacter antarcticus 307]
          Length = 230

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 70/227 (30%), Gaps = 12/227 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I E ID       L+ +  +R A  +P+     +     G+ +  + +++ ++    +
Sbjct: 3   QDILEIIDEALAGKGLSAAAASRLAVGNPSLIKNMR--TETGKPKRFNAQALRQLADVLD 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-------NTVG 119
                      +  R      +         +      + G  P             T  
Sbjct: 61  LEFYFGEPRTQTIVRLPAGFAERTVEPLATATARQEALEMGFLPIPYHSAAQPNFRGTAP 120

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           V   R        +    +        M+P    G + +L+S+     GD +      G 
Sbjct: 121 VALARQWLTASELVAESLSFLPVVTDDMVPTLTVGALALLDSSDVEPRGDGIWALALKGR 180

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV---EMSDIEWIARILWASQ 223
            +   +       + L +    +PV      E+  ++ + +++W +Q
Sbjct: 181 YMFARIQRPSPDMLVLKADKPNHPVQVFKGVELRALKVLGKVVWIAQ 227


>gi|254498338|ref|ZP_05111077.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254352446|gb|EET11242.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 202

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 62/204 (30%), Gaps = 24/204 (11%)

Query: 18  ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
             + LTP+ LARK G+      +     +      P   ++ +I      TI QLL +  
Sbjct: 11  RENKLTPAALARKLGIPTNKITRILNGDVT----DPKASTLLQIANYFGITIEQLLGVEP 66

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
                  ++      L                          +P   +            
Sbjct: 67  MVREGISQRLTTTQALPIFELSHPEQMTKEW--------YRWIPNDIA---------GDY 109

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSIDL 195
                      P ++K  +LI+N  I  +    +LIK        + K  + + G  I L
Sbjct: 110 FTLALNTDLYEPTFQKNSLLIINRDIAPDDRSYILIKKNDNPHHYLIKKYV-QEGDQIYL 168

Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
             +N   P++  + +    I  IL
Sbjct: 169 YPINPKLPIEIFDENLYTVIGVIL 192


>gi|24376076|ref|NP_720119.1| LexA repressor [Shewanella oneidensis MR-1]
 gi|29427747|sp|Q8E8Q8|LEXA_SHEON RecName: Full=LexA repressor
 gi|24351098|gb|AAN57563.1|AE015892_3 LexA repressor [Shewanella oneidensis MR-1]
          Length = 206

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A + G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIAETGMPPTRAEIATRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E+   E  L                   G    
Sbjct: 45  EHLKALAKKGCIEIMPGTSRGIRLPVEEEDNSETGLPLIGQ-----------VAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      T +   + +  SM  +   +GD+L ++   Q   G  + +  
Sbjct: 94  AQEHVEQYYQIDPSMFHPTANFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L + N  Y    V++S
Sbjct: 153 VDDDVTVKRFEKK-GNVVYLHAENEDYSPIKVDLS 186


>gi|67924433|ref|ZP_00517859.1| Peptidase S24, LexA repressor [Crocosphaera watsonii WH 8501]
 gi|67853722|gb|EAM49055.1| Peptidase S24, LexA repressor [Crocosphaera watsonii WH 8501]
          Length = 200

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 8/181 (4%)

Query: 41  SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                I+     PS   + K +   +    Q       +    +  E +   L      S
Sbjct: 14  WLIKYIDENQHAPSIRQMMKAMNLRSPAPVQSRLERLRNKGYIDWIEGKARTLRILHYQS 73

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSM-LPLYRKGDILI 158
            G    G    G         + +   +  + +        +    SM   L   GD+ I
Sbjct: 74  RGIPILGAIAAGGLVE--PFVDEQERLDLSHLLHGSSYWGLRVTGDSMIEDLITDGDLAI 131

Query: 159 L---NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   +    +  G+ +  +        K    + G  + L   N  Y    +  + I+  
Sbjct: 132 MRSLDPDETLKNGEIVAARVEGVGTTLKRYY-QEGEMVMLKPSNLNYQPIELNANQIQVQ 190

Query: 216 A 216
            
Sbjct: 191 G 191


>gi|293572871|ref|ZP_06683822.1| cI repressor [Enterococcus faecium E980]
 gi|291607064|gb|EFF36435.1| cI repressor [Enterococcus faecium E980]
          Length = 169

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSI 193
            +    K +  SM+P       +++     V  G+   +I     +   K +       +
Sbjct: 78  GEVFYLKIRGNSMVPTIPSDSYVLIRRQPVVEDGEIAPVIVNGDSEATLKRV-KHVNDVV 136

Query: 194 DLMSLNCCYPVDTVEMSD-IEWIAR 217
            LM  N  Y    ++ ++    + +
Sbjct: 137 MLMPDNNDYHPYIIDENNPARILGK 161


>gi|283954206|ref|ZP_06371731.1| transcriptional regulator, putative [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794485|gb|EFC33229.1| transcriptional regulator, putative [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 215

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 16/219 (7%)

Query: 8   KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   + +M E   +   + LA+   ++ +     ++ G            I+KI   +N
Sbjct: 2   EVSNILQKMFETIGVKNKNQLAKYLNIENSFIAGWEKRGKIPEK------YIYKISQDSN 55

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                 L+    +   T K  +       P          G    G         E+   
Sbjct: 56  LPYEYFLNNTNKNEYNTNKCNQSTTFYSIPKLNISASAGGGNELIG--LEEYETGEMLEL 113

Query: 127 HNGIYAI-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               +          K    SM+P+      ++     +   GD L I      ++ K+L
Sbjct: 114 SKAFFKTTPKNLKAIKVDGYSMVPMLLPDSWVVFEETHEYQ-GDGLYILNFDNQLMVKLL 172

Query: 186 ISRRGRSI-DLMSLNCCYPVDTVEMSD----IEWIARIL 219
                  I D++S+N  Y   ++++ D    +    ++L
Sbjct: 173 QLNPISKILDIISVNKDYKSYSIDLKDSQIELIIQGKVL 211


>gi|220925622|ref|YP_002500924.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
 gi|219950229|gb|ACL60621.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
          Length = 230

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 63/231 (27%), Gaps = 18/231 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKA----GLDPTSFNKSKRFGIEGRNRWPSTE 56
           M    +    E + R         + +A +A    GL  +++   +        R  +  
Sbjct: 1   MRDRDNDARRERLKRARFDAGYKNASMAAEALRDKGLKVSTYKSHENGT-----RDITEN 55

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG----VFPTG 112
           +     +A   +   L               +             G             G
Sbjct: 56  AAMLYASAMGISFEWLWSGKGDMRANDATTPQRNVANAITAVVPSGRLIPVVGRKRVGEG 115

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
                 G    R    G           +     MLP Y  G+++ ++     + G  + 
Sbjct: 116 GAIVIDGTISGRVECPGNLVDVDNAYSTEVVGDCMLPRYEPGELVFIHPTRPYHAGSYVF 175

Query: 173 --IKPRTGDI--VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             ++  +GD+  + K  +      + +  LN      T +   +E +  I+
Sbjct: 176 LNVRDASGDLIGLVKRYVRTTSEHVIVEQLNP-PKTLTFDRRSVEAVHLIV 225


>gi|315655335|ref|ZP_07908235.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii ATCC
           51333]
 gi|315490275|gb|EFU79900.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii ATCC
           51333]
          Length = 130

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +   +      +    SM+      GD LI++ +++ + G+ ++     
Sbjct: 27  YFDRDIDLNEHLIRNRPATFLVRVAGDSMINAGISDGDELIVDRSLEASEGNVVIAIID- 85

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G++  K L        +L   N  YP   +  S+++    +
Sbjct: 86  GEMTVKRL-RFGAHGPELHPANPTYP--ILHPSELQIWGVV 123


>gi|220911002|ref|YP_002486311.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
           A6]
 gi|219857880|gb|ACL38222.1| peptidase S24 and S26 domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 143

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                +    SM       GD LI+N A++   G  ++     G++  K L       I 
Sbjct: 54  STFVVRVTGNSMEGAGISDGDELIVNRALEPKDGSVVIAVLD-GELTVKRL-RITAAGIV 111

Query: 195 LMSLNCCYPVDTVEM-SDIEW 214
           L + N  Y    V   SD+  
Sbjct: 112 LQAENPRYQDIKVSALSDLTI 132


>gi|77361776|ref|YP_341351.1| transcriptional repressor for SOS response [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876687|emb|CAI87909.1| transcriptional repressor for SOS response [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 182

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
            + I L+        G    G    G         E     + +      D   +    S
Sbjct: 40  SRGIQLIEEDEPEQLGLPLIGRVAAGEPILAQQHVESHCKIDPLMFKPAADFLLRVNGMS 99

Query: 147 MLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           M  +    GD+L ++       G  ++ +    D+  K L  + G+ + L + N  +   
Sbjct: 100 MRDIGIMDGDLLAVHRTQVAENGQVIVARVD-DDVTVKRL-EKAGKKVLLHAENKEFSSI 157

Query: 206 TVEMS 210
            V++ 
Sbjct: 158 EVDLE 162


>gi|299770585|ref|YP_003732611.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidases) [Acinetobacter sp. DR1]
 gi|298700673|gb|ADI91238.1| SOS-response transcriptional repressor (RecA-mediated
           autopeptidases) [Acinetobacter sp. DR1]
          Length = 203

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 92  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDINDPLIVDRSISAKSGDIVIALID- 150

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K L+         + L + N  Y    +E      I  ++
Sbjct: 151 NDFTVKRLMIDSQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVV 195


>gi|238022417|ref|ZP_04602843.1| hypothetical protein GCWU000324_02324 [Kingella oralis ATCC 51147]
 gi|237867031|gb|EEP68073.1| hypothetical protein GCWU000324_02324 [Kingella oralis ATCC 51147]
          Length = 270

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 17/179 (9%)

Query: 50  NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            R PS  S   +       + +  D   +         +    ++          +    
Sbjct: 95  RRSPSAASAVGVPFFMRAMVAEYADWAAAQHTDAIVPVRYHVNVFGSAGNGYQVNEPV-- 152

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                 +T  +    S  + +    +     + +  SM P       ++          +
Sbjct: 153 ------DTEAMWFRASFFDYLGVPPSHCFCTRVRGDSMHPTLIDRGTVL-WKMQNGYTRE 205

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDI-----EWIARILW 220
            + +  +  ++  K L         ++S N     YPV+T++++++     E     LW
Sbjct: 206 GIYLFRQVDELRIKRLQRTSRSVYRIISDNSNKDIYPVETLDLAELGEYDFEIYGFYLW 264


>gi|260551643|ref|ZP_05825717.1| DNA polymerase V component [Acinetobacter sp. RUH2624]
 gi|260405386|gb|EEW98880.1| DNA polymerase V component [Acinetobacter sp. RUH2624]
          Length = 165

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 3/85 (3%)

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                K    SML       D LI++ ++    GD ++      +   K L+        
Sbjct: 73  STFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVIALID-NEFTVKRLMIDEKGQ-W 130

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L + N  Y    +       I  ++
Sbjct: 131 LKAENPEYKNIYLSEEQELIIWGVV 155


>gi|221124434|ref|XP_002164597.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 129

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E       +          +    SM        DIL+++ AI+      ++     G+ 
Sbjct: 23  ERIDLSKVLITHPQATFLQRVSGHSMKDAGIFDNDILVIDRAIKPRHKMIVVAVVD-GEF 81

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K L  +R   + L + N  YP    +      I  ++
Sbjct: 82  TVKQLY-QRAGRVKLQAANPTYPDIVPKEGQTIEIWGVV 119


>gi|254497240|ref|ZP_05110048.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353468|gb|EET12195.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 213

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 17/195 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           MT  +   +   + ++   H  ++ S LAR  G+   + +        G  R P  +++ 
Sbjct: 1   MTEMT---LSNNLQQLMRIHGNISVSELARLTGIPQPTIHHIL----TGSTRNPRKKALE 53

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++    + +I +L               KE   +   P        +    T    ++  
Sbjct: 54  ELSLYFSVSINEL-TGQEPLPAVIPDSVKENLQISTIPVIEWASLKTWPSTTVKTQDSQE 112

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +   +        I          D SM PL+++  +LI +S       D +++     +
Sbjct: 113 ILIDK-------KIAKNSFALVMPDASMEPLFQQNSLLIFDSGKTPKDRDFVIVYLSKEE 165

Query: 180 IVAK-VLISRRGRSI 193
           IVA   L      S 
Sbjct: 166 IVAFNRLFIENNTSY 180


>gi|45658491|ref|YP_002577.1| LexA family transcriptional repressor [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45601734|gb|AAS71214.1| transcriptional repressor (LexA family) [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 209

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 35/219 (15%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSF--NKSKRFGIEGR-NRWPSTESIFKI 61
           + KK+ E + R  +    T   L     L   +   +  ++   +G   R P+       
Sbjct: 14  TQKKLLELLKRWKDEPR-TIRELMEALDLKYPNLVYHHIEQLENKGYLKRNPN------- 65

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                 E     +        G  G         G+    + + 
Sbjct: 66  ----------NPKDYEIVSDPEESNIVYLNRYGEAQCGPNGTILD-----GDPVERIPLS 110

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               P +      +     K +  SM+P  + GD++I   A        L++  + G ++
Sbjct: 111 RKMLPFS-----SSDGFIVKARGNSMIPRIKDGDLVIAKKASDA-NDKALIVCVQNGKVL 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218
            K L       I L+SLN  +   T+  +  D +    +
Sbjct: 165 IKQLRKSETG-ILLLSLNDEFDPITINPDKDDFKIEGEV 202


>gi|299771209|ref|YP_003733235.1| DNA polymerase V component [Acinetobacter sp. DR1]
 gi|298701297|gb|ADI91862.1| DNA polymerase V component [Acinetobacter sp. DR1]
          Length = 166

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +   +T     K    SML       D LI++ ++    GD ++      D   
Sbjct: 61  LDMNEHLIKNETATFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVVALID-NDFTV 119

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L+    +   L + N  Y    ++ S    I  ++
Sbjct: 120 KRLMIEESKK-WLKAENPDYKNIYLQDSQELIIWGVV 155


>gi|38257038|ref|NP_940692.1| RulA [Pseudomonas syringae pv. syringae]
 gi|7404542|gb|AAC44638.2| RulA [Pseudomonas syringae]
 gi|37723815|gb|AAR02141.1| RulA [Pseudomonas syringae pv. syringae]
          Length = 141

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        K    SM         ++++
Sbjct: 19  YTFKIPAGFPNPAA-DHIEQDFSFDRLMDLRA--PHIYVAKIDGDSMEGAKIFHDSLVVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + + + + G  ++      + V+K+LI + G  + L S N  YP   +   +   I  ++
Sbjct: 76  DRSRKPSSGSIVIAALN-NEPVSKILILQ-GDHVVLKSANPAYPPRHILEGEELSIWGVV 133


>gi|299529254|ref|ZP_07042698.1| putative phage repressor [Comamonas testosteroni S44]
 gi|298722778|gb|EFI63691.1| putative phage repressor [Comamonas testosteroni S44]
          Length = 185

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 41/145 (28%), Gaps = 6/145 (4%)

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
                   + +      GS G        +      + +               +     
Sbjct: 36  PMYHAPDAVIVPVLSNCGSMGPGSEL-LESDVIVGDLALSPHWINQQIRPQNPQELRFIH 94

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
               SM P +  GD+L++++ +        + + +         K +       + + S 
Sbjct: 95  AYGDSMHPTFTDGDVLLVDTGLNARDPSSREGVYVLRANDRTFIKRVTPTFDGKLQVTSD 154

Query: 199 NCCYPV-DTVEMS-DIEWIARILWA 221
           N       T+     ++ + R++WA
Sbjct: 155 NPSAKTVQTLNGDHQVDVVGRVVWA 179


>gi|218460494|ref|ZP_03500585.1| putative phage-related transcriptional regulator protein
          [Rhizobium etli Kim 5]
          Length = 36

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/36 (80%), Positives = 34/36 (94%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSF 38
            SH++IWEAIDR+AERH+LTPSGLAR+AGLDPTSF
Sbjct: 1  MLSHEQIWEAIDRLAERHDLTPSGLARRAGLDPTSF 36


>gi|120554134|ref|YP_958485.1| putative prophage repressor [Marinobacter aquaeolei VT8]
 gi|120323983|gb|ABM18298.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Marinobacter aquaeolei VT8]
          Length = 145

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + V   +    +             + Q  SM       GD+L+++ +++   GD ++
Sbjct: 32  AEDYVE--KTIDLNELCIKHPAATFFVRVQGESMTEAGIYPGDVLVVDRSLRAGHGDTII 89

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 ++  K L       + L+  N  Y   TVE   +  +  ++
Sbjct: 90  -ASLETEMTVKQLH-LTPPPVRLLPRNPAYQPITVEGDMVMEVFGVV 134


>gi|317485949|ref|ZP_07944805.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Bilophila wadsworthia 3_1_6]
 gi|316922799|gb|EFV44029.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Bilophila wadsworthia 3_1_6]
          Length = 230

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 63/212 (29%), Gaps = 14/212 (6%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESI------FKILAATNETICQLLDL 75
           T + LA+   +  +S  ++KR      + +    E +       K          +   +
Sbjct: 20  TQTELAKLLEVSQSSVAEAKRRQSIPADWYLKLFEKLGVNPDWLKKGNGPVYLRTEAGYV 79

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
           P                L                 TG+    +  P  +      YA + 
Sbjct: 80  PSDGDGPPIDPGLLGSPLAQSALAPVYAMCGDSTKTGSPAAAL-QPIGKIALPKPYAREG 138

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLISRRGRS-I 193
                +  + S  P  R G  + +++       G+   +      I+ + L   R +   
Sbjct: 139 -IIVLEMDNESAAPTARCGAYVGIDTDASHPASGELFAVLLPYEGIILRRLAWDRKKKCF 197

Query: 194 DLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
            L + N  YP   ++  D+    + R+ W  Q
Sbjct: 198 VLRAENPAYPEIRIQ-EDLTGRILGRLAWVMQ 228


>gi|124262592|ref|YP_001023062.1| DNA polymerase V [Methylibium petroleiphilum PM1]
 gi|124261838|gb|ABM96827.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Methylibium petroleiphilum PM1]
          Length = 137

 Score = 62.9 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               +  +          + +  SM       GD+++++ AI    G  ++      +  
Sbjct: 33  RIDLNEVLIKHPQSTFLMRVRGPSMREAGIDDGDVVLVDRAITPCHGHVVVAVVD-HEFT 91

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARI 218
            K L  +RG  + L + N  YP     +  ++E    +
Sbjct: 92  VKRL-WKRGSRVKLQAANPTYPDIVPKDGQEVEVWGVV 128


>gi|261381420|ref|ZP_05985993.1| component of DNA polymerase V [Neisseria subflava NJ9703]
 gi|284795597|gb|EFC50944.1| component of DNA polymerase V [Neisseria subflava NJ9703]
          Length = 193

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +    +  +    +     ++   SML     K DI+I++ +     GD + +     + 
Sbjct: 83  DYLDFNEYLITNPSATFAARSGGYSMLDAGIGKDDIMIIDRSKTPKHGDIV-MADVGNEF 141

Query: 181 VAKVLISRRGRSIDLMSLNC--CYPVDTVEMSD 211
             K L    GR  +L S N    YP    + SD
Sbjct: 142 TIKRLYKVPGRKPELHSENASGEYPDFIPDDSD 174


>gi|46446903|ref|YP_008268.1| putative SOS response regulator lexA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400544|emb|CAF23993.1| putative SOS response regulator lexA [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 203

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 25/217 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT    + I + I +  E H  +PS                +          P+  S+ K
Sbjct: 1   MTP-KQQAILQFIQQFIETHQYSPS---------------YREIMKHFSLASPA--SVHK 42

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            + +         +   S           +           G         G        
Sbjct: 43  HIQSLQRKGVLAAEKKCSRSLIPTHPPASLTFSAEVLLPLIGNIM-----AGYPIEMFMR 97

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+  +  +            + Q  S+   L + GD+L++ +   V  G+ ++      +
Sbjct: 98  PQTIAVPSTFVHHLNNTYILRVQGNSLSEELIQDGDLLVVEARSIVQPGEIIIGAINHHN 157

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            V K      G+ I L S++  +   T+    +    
Sbjct: 158 TVVKRYYP-EGQYIRLESIHINHSSLTLRHDHLAIQG 193


>gi|332703676|ref|ZP_08423764.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553825|gb|EGJ50869.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 151

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V   +    +  +          +    SM  +  R GD+L+++ +I    G  ++
Sbjct: 30  ADDYVE--QSLDLNEHLVRNPPATYFVRASGDSMEGVGIRPGDLLVVDRSIDPRPG-LIV 86

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218
           I    G+   K L  R    + L   N  Y    V    D+E    +
Sbjct: 87  IASVQGEYTVKTLERR-ADRLWLAPANPRYTAIEVTSDSDLEIWGVV 132


>gi|237731625|ref|ZP_04562106.1| DNA polymerase V subunit UmuD [Citrobacter sp. 30_2]
 gi|226907164|gb|EEH93082.1| DNA polymerase V subunit UmuD [Citrobacter sp. 30_2]
          Length = 139

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    ++ +    +     K+   SM+      GD+L+++SA +   GD ++  
Sbjct: 32  DYVE--KRIDLNDLLVQHPSATYFVKSSGDSMMGAGIGAGDLLVVDSARKAAHGDIVIAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
              G+   K L       + L   N  Y    +   D ++    +
Sbjct: 90  I-EGEFTVKRLQLHP--VVMLKPENSAYAPIMIGSEDTLDIFGVV 131


>gi|117922421|ref|YP_871613.1| LexA repressor [Shewanella sp. ANA-3]
 gi|166224649|sp|A0L2D8|LEXA_SHESA RecName: Full=LexA repressor
 gi|117614753|gb|ABK50207.1| SOS-response transcriptional repressor, LexA [Shewanella sp. ANA-3]
          Length = 206

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 58/215 (26%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A + G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIAETGMPPTRAEIATRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E+   E  L                   G    
Sbjct: 45  EHLKALAKKGCIEIMPGTSRGIRLPVEEEDNSESGLPLIGQ-----------VAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        +   + +  SM  +   +GD+L ++   Q   G  + +  
Sbjct: 94  AQEHVEQYYQVDPSMFHPAANFLLRVRGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L + N  Y    V++S
Sbjct: 153 VDDDVTVKRFEKK-GNLVYLHAENEDYSPIKVDLS 186


>gi|213967419|ref|ZP_03395567.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1]
 gi|213927720|gb|EEB61267.1| repressor protein c2 [Pseudomonas syringae pv. tomato T1]
          Length = 160

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 11/147 (7%)

Query: 81  RTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
                  +   +   P  +    +        G     V            Y  +     
Sbjct: 12  EPGTPTSEPSNVAMIPQPARMYRYPVVSSVAAGAWAEAVEEAFSDRYEASDYKAKGPAFW 71

Query: 140 HKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSID 194
            +    SM         +G ++++++ ++   G  ++   P + +   K LI      + 
Sbjct: 72  LEVVGDSMTAPSGTSVPEGMLILVDTGVEARPGKLVVAKLPSSNEATFKKLIED-AGQLY 130

Query: 195 LMSLNCCYPVDTVEMSDIEWIA---RI 218
           L  LN  Y +      D + I    R+
Sbjct: 131 LKPLNPGYSMIKCT-DDCKIIGVAVRV 156


>gi|89091943|ref|ZP_01164898.1| UmuD [Oceanospirillum sp. MED92]
 gi|89083678|gb|EAR62895.1| UmuD [Oceanospirillum sp. MED92]
          Length = 141

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +          + +  SM+      GDILI++ ++    GD ++  
Sbjct: 34  DYVE--KTLDLNELLIQRPAATYFVRAEGDSMIGAGIHSGDILIVDRSLTAKEGDIVIAA 91

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
              G++  K L  +      L+  N  Y   T+ E SD+E    +
Sbjct: 92  -VEGELTVKQLQLKP--VCRLLPRNNAYRPITIAEGSDLELFGVV 133


>gi|227111912|ref|ZP_03825568.1| DNA polymerase V subunit UmuD [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 139

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + V   +    +       +     +    SM       GD+++++SA+Q   GD ++
Sbjct: 30  ANDYVE--QRIDLNTLCVRHPSATYFVRVSGQSMVEGGIHDGDLVVVDSALQARHGDIII 87

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
                G+   K L     R+  L+ +N  Y    +     ++    +
Sbjct: 88  AALD-GEFTIKQLQLTPTRA--LVPMNAAYAPIPINECDSLDIFGVV 131


>gi|261881050|ref|ZP_06007477.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332167|gb|EFA42953.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 215

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 65/217 (29%), Gaps = 19/217 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +    ++     +   + AGL       +        +    ++ + KI     + 
Sbjct: 4   VSDRLAFFLKQKGKGQTAFEKDAGLGRGYVKNA--------SDNMGSKVMSKIKKQCPDL 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN----KWNTVGVPEIR 124
               L          E+ ++   +      G+  ++       G            P   
Sbjct: 56  NIDWLLTGEGSMLIDEENKEVPVVTNEKIRGAVPYYGDLPVSAGQQDLATILNNMEPTGW 115

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIV 181
               G   + +          SM P  + GD +    ++   +++  D+  +     D +
Sbjct: 116 INLPG---MPSSIGAFPVVGCSMEPDIKPGDFISIIEVDRWERLDP-DKTYMIITRDDRM 171

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            K L         L  ++  YP   +E S+I  I R+
Sbjct: 172 IKHLSVDDSDDEILWCISPNYPKFKIEKSEIVAIYRV 208


>gi|33862908|ref|NP_894468.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634824|emb|CAE20810.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9313]
          Length = 164

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + + +      +  +          +    SM  +    GD+L+++ ++    G  ++
Sbjct: 40  AEDYIEI--GIDLNEQLIRHPASTFFLRVSGHSMTGVGIHNGDLLVVDRSLDARPGHIVV 97

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIEW 214
                G    K L+  R   + L + +  YP   +    D++ 
Sbjct: 98  AILD-GAFTLKQLVRHR-GVLRLEAAHSNYPPLDLACFGDVQI 138


>gi|89075604|ref|ZP_01162005.1| hypothetical protein SKA34_03705 [Photobacterium sp. SKA34]
 gi|89048611|gb|EAR54184.1| hypothetical protein SKA34_03705 [Photobacterium sp. SKA34]
          Length = 126

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E       +          +    SM+      GD+L+++ A +V  G  ++ +    + 
Sbjct: 24  ESLDLDEFLIRHPNATFFLRASGESMIGAGIFDGDLLVVDRAEKVIPGRIVIARI-YDEF 82

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K L+     +  L + N       +   D E    +
Sbjct: 83  TCKRLVRI-NDAWWLKAENPAMKSFPLP-QDAEIFGVV 118


>gi|257470284|ref|ZP_05634375.1| hypothetical protein FulcA4_13152 [Fusobacterium ulcerans ATCC
           49185]
 gi|317064495|ref|ZP_07928980.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690171|gb|EFS27006.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 140

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 3/109 (2%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              G       +    S  N              +  SM      G I+ +     +  G
Sbjct: 24  ISAGYGSYENEIENYISVVNFNDVFTGDVFGVVVKGDSMEDTILDGAIVFIKKCDDIPFG 83

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIA 216
                    G    K L  + G  + L S N  Y    ++   D   + 
Sbjct: 84  KIG-AFMLNGCAYLKRLCEKEGEMV-LRSDNSYYDDIEIKASDDFTIVG 130


>gi|222149048|ref|YP_002550005.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221736033|gb|ACM36996.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 191

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 66/225 (29%), Gaps = 41/225 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIF 59
           M       I   I ++          LA   G+  ++ N+ K     EG +R    E   
Sbjct: 1   MPM----DIATYIAQLLSMKKWNQVKLAAHFGVSQSTVNRWKSGSEPEGHHRDAIRE--- 53

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                               G    K  K + L+    +G   +            N V 
Sbjct: 54  --------------LYNMEFGTPDSKPFKRVKLMGKVGAGQEIYAIDD-----GGQNYVD 94

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRT 177
            P                   +    SM P Y +G IL  +  +  +     R +++   
Sbjct: 95  APADAHQ---------NTVAVEVSGESMYPAYEEGTILFYSKTLPPSEMVNRRAVVQLAD 145

Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           G I  K +       +  L S+N  YP    ++  +EW A I W 
Sbjct: 146 GRIFVKTVRPGTTPNTWTLTSINALYPDMIDQI--VEWAAPIDWI 188


>gi|332668057|ref|YP_004450845.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100]
 gi|332336871|gb|AEE53972.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 276

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 61/204 (29%), Gaps = 14/204 (6%)

Query: 28  ARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKE 87
           +R+  L      +S    ++GR R  + + + + +         L           ++++
Sbjct: 25  SRQFALSLDYLPQSLSEILKGR-RDVTIDLLRRAVEIYQVNPIYLYTGEGELFLKPDEEK 83

Query: 88  KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------RHK 141
               L     +                +               Y++              
Sbjct: 84  NLQILTVVTDTQDVERILHVPIAAQGVYPHEIGNPTFVQSLPSYSMPEFQYTNGVHRCFD 143

Query: 142 TQDTSMLPLYRKGDILILNSAIQVN-----CGDRLLIKPRTGDIVAKVL--ISRRGRSID 194
               SM+P + +GD +I                 + +    G++V K +    +  + + 
Sbjct: 144 INGDSMVPTFLEGDKVISCFVEPAQWEVGIKNQHVYVFVAQGEVVVKRVMNKLKEHKQLQ 203

Query: 195 LMSLNCCYPVDTVEMSDIEWIARI 218
           L+S N  Y    ++ S+I  I ++
Sbjct: 204 LISDNSFYESYPLDWSEIREIWQV 227


>gi|283850429|ref|ZP_06367718.1| putative phage repressor [Desulfovibrio sp. FW1012B]
 gi|283574455|gb|EFC22426.1| putative phage repressor [Desulfovibrio sp. FW1012B]
          Length = 232

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 7/224 (3%)

Query: 5   SHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S+ +  EA DR+ +  ++ T   +A+   +  +S + +KR      + W         L 
Sbjct: 9   SNNRFDEAFDRIKKATDMRTQVEIAKLLDIRQSSISDAKRRQSIP-DSWLIKLYQIYNLN 67

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  ++            +  +        P       +S   P   +         
Sbjct: 68  PNWIIDGEMPQFLGEQRGGALQVRESGETYGRKPKYYQMPVNSMSLPEQGQGPWTENSVE 127

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVA 182
                  +   +     +  +  M P+ ++G  + ++     +  G    +      +V 
Sbjct: 128 TLAVPEQFYRPSLVF-VRMDENDMEPVIQRGAYVGIDKERRTIRSGALYALDMPVEGLVI 186

Query: 183 KVLISRR-GRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
           K +        + L S N  Y    +         + R++   Q
Sbjct: 187 KRVFHDTENSRLILRSENQAYTEQALAAEGFGERVLGRVVCVFQ 230


>gi|326791744|ref|YP_004309565.1| peptidase S24/S26A/S26B, conserved region [Clostridium lentocellum
           DSM 5427]
 gi|326542508|gb|ADZ84367.1| Peptidase S24/S26A/S26B, conserved region [Clostridium lentocellum
           DSM 5427]
          Length = 489

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 35/226 (15%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTES------IFKILAATNETICQLLDLPFSD 79
             +R  GL   +  K   + + GR R              K ++     +   +    ++
Sbjct: 261 EFSRMLGLTRGTSYKKLGYDMTGRVRRLKGMRQKGKVKAKKQISLEPTPLEIFMTNQLNN 320

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-------NTVGVP----------- 121
            + +          Y                 G  +       +   +P           
Sbjct: 321 HQASHLPWYVETYKYINKLTGLETIFKQDTSAGETYIDEVKQEDVQSLPIYSDIAAGMPI 380

Query: 122 EIRSPHNGIYAIQT-------QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLI 173
           E+     G + I                Q  SM+      GD +++ +         +  
Sbjct: 381 EVVDDTCGSFEIPGELTGHKKNTYMLHVQGDSMIGAGIDDGDYVVIQAGS--VSDHEIAA 438

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G I  K ++ +    I L+S N  Y    +E  +   + +++
Sbjct: 439 IYYNGAITLKRIV-QEEEHILLVSENPKYRPIVIEDGEFRAMGKLI 483


>gi|315128032|ref|YP_004070035.1| transcriptional repressor for SOS response [Pseudoalteromonas sp.
           SM9913]
 gi|315016546|gb|ADT69884.1| transcriptional repressor for SOS response [Pseudoalteromonas sp.
           SM9913]
          Length = 182

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
            + I L+        G    G    G         E     + +      D   +    S
Sbjct: 40  SRGIQLVEEEEPEQLGLPLIGRVAAGEPILAQQHVESHCKIDPLMFKPAADFLLRVNGMS 99

Query: 147 MLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           M  +    GD+L ++       G  ++ +    D+  K L  + GR + L + N  +   
Sbjct: 100 MKDIGIMDGDLLAVHKTQVAENGQVIVARVD-DDVTVKRL-EKAGRKVLLHAENDEFSAI 157

Query: 206 TVEMS 210
            V++ 
Sbjct: 158 EVDLE 162


>gi|90577841|ref|ZP_01233652.1| hypothetical protein VAS14_12359 [Vibrio angustum S14]
 gi|90440927|gb|EAS66107.1| hypothetical protein VAS14_12359 [Vibrio angustum S14]
          Length = 135

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E       +          +    SM       GD+L+++ A +V  G  ++ +    + 
Sbjct: 33  ESLDLDEYLIRHPNATFFLRASGESMTGAGIFDGDLLVVDRAEKVIPGRIVIARI-YNEF 91

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K L+     +  L + N       +   D E    +
Sbjct: 92  TCKRLVRI-NDAWWLKAENPAMKSFPLP-QDAEIFGVV 127


>gi|78187063|ref|YP_375106.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidase)-like [Chlorobium luteolum DSM 273]
 gi|78166965|gb|ABB24063.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Chlorobium luteolum DSM 273]
          Length = 212

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 3/104 (2%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKP 175
              +      +  +          + + +SM      +GDIL+++ ++    GD  L   
Sbjct: 103 EDHLEVTLDLNRALVRHPDATFYARVKGSSMIEAGIAEGDILVIDRSLDAKEGDIALCFL 162

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   K +       + LM  N  Y    +       +  I+
Sbjct: 163 D-GEFTVKRIA-MDDGVLMLMPENSAYSPIRIGEESDFQVWGIV 204


>gi|226951428|ref|ZP_03821892.1| UmuD-like protein [Acinetobacter sp. ATCC 27244]
 gi|294650948|ref|ZP_06728291.1| UmuD-like protein [Acinetobacter haemolyticus ATCC 19194]
 gi|226837850|gb|EEH70233.1| UmuD-like protein [Acinetobacter sp. ATCC 27244]
 gi|292823165|gb|EFF82025.1| UmuD-like protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 203

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 5/104 (4%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V +    +  +   +      K    SML       D L+++ +I    GD ++      
Sbjct: 93  VEQALDLNEFLIRNENSTFIVKANSLSMLDAGIDIDDPLVVDRSIPAKSGDIVIALID-N 151

Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D   K L          + L + N  Y    +       I  ++
Sbjct: 152 DFTVKRLMIDHHFNPPKVWLKAENPDYQNIYITEGQELVIWGVV 195


>gi|326795100|ref|YP_004312920.1| peptidase S24/S26A/S26B, conserved region [Marinomonas mediterranea
           MMB-1]
 gi|326545864|gb|ADZ91084.1| Peptidase S24/S26A/S26B, conserved region [Marinomonas mediterranea
           MMB-1]
          Length = 151

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V      +       +     + Q  SM       GD+L+++ ++    GD ++     G
Sbjct: 45  VERTLDLNELCIQHPSATFFVRAQGDSMIEAGIHCGDVLVVDRSLTSKHGDIVIAC-VHG 103

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           ++  KVL       + L   N  YPV  +   
Sbjct: 104 EMTVKVLELMPA--VALRPRNKAYPVIPISEE 133


>gi|150389370|ref|YP_001319419.1| helix-turn-helix domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949232|gb|ABR47760.1| helix-turn-helix domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 226

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 61/215 (28%), Gaps = 10/215 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESI-FKILAATNETI 69
           I     +  ++   LA+K GL  +   + +               E +  K+   T +  
Sbjct: 8   IKEARLKAKMSEKVLAKKCGLAESYIVQVESGKKVINENAAEKILEKLGAKVAFVTEQEE 67

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVPEIR 124
                    + R  +++E    +                FP              +P + 
Sbjct: 68  PVQKSQNSKETRVNKQEETFFNVQPTEQWSDALANIIKKFPVYQLDTNKITQYKELPILN 127

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
               G Y          + +       +K DI++++   ++   +   +       + + 
Sbjct: 128 KKVEG-YTWDKILFVQSSNNEMQALRIKKDDIVMISLTNEIQNNNI-YLFEIDNRKMLRQ 185

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           L       + L + N        ++  I+ I + +
Sbjct: 186 LRKEANNKVTLSTGNKGEIPIQTDVKQIKIIGKCV 220


>gi|315497361|ref|YP_004086165.1| hypothetical protein Astex_0316 [Asticcacaulis excentricus CB 48]
 gi|315415373|gb|ADU12014.1| hypothetical protein Astex_0316 [Asticcacaulis excentricus CB 48]
          Length = 233

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 6/221 (2%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNK--SKRFGIEGRNRWPSTESIFK 60
               ++  + + +      LT + LA+KAGL  T+  +  + R    G       E++  
Sbjct: 9   DIQREEQRKWLLQAISESGLTATALAKKAGLAATTVTRRVNPREDGHGGESLLKRETLLA 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   +   L     +      + + +   +         +   G    G+       
Sbjct: 69  LAKAAGVSPPVLGAPYLAARSERRRVDDDEDSVLINQVDLY-YGMGGGSDIGDHVEVEPR 127

Query: 121 PEIRSPHNGI-YAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTG 178
              RS    I  A             S  P    GDIL+++ S  +    D+     +  
Sbjct: 128 KFSRSWLRQISNANPKDLFWTTGNGDSNYPTIADGDILLIDMSQKKPQKNDQFWAITQYN 187

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               K L         ++S N   P D      +  I R++
Sbjct: 188 LGQIKRL-RATADGFQILSDNPQVPSDKATDGSMVIIGRLV 227


>gi|126172410|ref|YP_001048559.1| LexA repressor [Shewanella baltica OS155]
 gi|153002676|ref|YP_001368357.1| LexA repressor [Shewanella baltica OS185]
 gi|160877411|ref|YP_001556727.1| LexA repressor [Shewanella baltica OS195]
 gi|217975253|ref|YP_002360004.1| LexA repressor [Shewanella baltica OS223]
 gi|166224645|sp|A3CYX7|LEXA_SHEB5 RecName: Full=LexA repressor
 gi|166224646|sp|A6WU05|LEXA_SHEB8 RecName: Full=LexA repressor
 gi|189046546|sp|A9KUW8|LEXA_SHEB9 RecName: Full=LexA repressor
 gi|254809106|sp|B8ECL9|LEXA_SHEB2 RecName: Full=LexA repressor
 gi|125995615|gb|ABN59690.1| SOS-response transcriptional repressor, LexA [Shewanella baltica
           OS155]
 gi|151367294|gb|ABS10294.1| SOS-response transcriptional repressor, LexA [Shewanella baltica
           OS185]
 gi|160862933|gb|ABX51467.1| transcriptional repressor, LexA family [Shewanella baltica OS195]
 gi|217500388|gb|ACK48581.1| SOS-response transcriptional repressor, LexA [Shewanella baltica
           OS223]
 gi|315269615|gb|ADT96468.1| transcriptional repressor, LexA family [Shewanella baltica OS678]
          Length = 206

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 55/214 (25%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A + G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIADTGMPPTRAEIATRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                                      G    G    G    
Sbjct: 45  EHLKALAKKGCIEIMPGTSRGIRLTAE-----------VEEVTETGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + +  SM  +   +GD+L ++   Q   G  + +  
Sbjct: 94  AQEHVEQYYQVDPSMFHPAADFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K    + G  + L + N  Y    V++
Sbjct: 153 VDDDVTVKRFEKK-GNVVYLHAENEDYSPIKVDL 185


>gi|254419963|ref|ZP_05033687.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
 gi|196186140|gb|EDX81116.1| Peptidase S24-like domain protein [Brevundimonas sp. BAL3]
          Length = 153

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 12/140 (8%)

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
                     + +  +  +G            G   + + VP           ++     
Sbjct: 23  QPPAGPAYDTLDVYGYAQAGGDDL---VSLADGQVIDRIEVPAGL--------VRGATIG 71

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
            +    SM P    G+ +I+   +        +++ R G  + K    +R  ++ L   N
Sbjct: 72  IRVVGDSMEPRLFSGETVIVGLNMPPQRDRDCVVEFRDGSAIVKQYKGQRDGTVFLHQYN 131

Query: 200 CCYPVDTVEMSDIEWIARIL 219
               V  VE S ++ I  +L
Sbjct: 132 PDKEVR-VEASKVKAIHAVL 150


>gi|258647471|ref|ZP_05734940.1| UmuD protein [Prevotella tannerae ATCC 51259]
 gi|260852649|gb|EEX72518.1| UmuD protein [Prevotella tannerae ATCC 51259]
          Length = 216

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 4/183 (2%)

Query: 40  KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
           +   F IEGR          +     N                  +   +I       S 
Sbjct: 26  RLFSFRIEGRLADFIDSHKNRTAFIHNCIEKAFNKKEEDASFFALQTLGDIYPATSVRSM 85

Query: 100 SGGFFDSGVFPTGN--KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
           +   FD+     G     +T    +       +          K +  SM+      GDI
Sbjct: 86  TLPKFDNARVVAGFPLALDTDEQAQSVDILRMLCPNPEASYLIKVRGDSMIDAGISDGDI 145

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +I++ + +      + +    G+   K ++ + G++  L+  N  YP   +   D   + 
Sbjct: 146 IIVDKSNRTPSEHEVAVCEYNGEYTIKHIVQQAGKT-WLVPANPKYPRIEIFEEDDFSVW 204

Query: 217 RIL 219
            ++
Sbjct: 205 GVV 207


>gi|260769159|ref|ZP_05878092.1| prophage MuSo1 transcriptional regulator Cro/CI family [Vibrio
           furnissii CIP 102972]
 gi|260614497|gb|EEX39683.1| prophage MuSo1 transcriptional regulator Cro/CI family [Vibrio
           furnissii CIP 102972]
          Length = 135

 Score = 62.5 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 15/129 (11%)

Query: 104 FDSGVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
                   G           + + +P+      G+               SM P     D
Sbjct: 1   MFDVHAAAGAGSLVHSEYQIDKLIIPKSLLAEFGL--APNCAAIIYVDGNSMEPTLSHKD 58

Query: 156 ILILN-SAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEM---S 210
            L+++   +Q    D + +      +  K L          ++S N  Y    +      
Sbjct: 59  RLLVDTRELQHPVTDGVYVIRIDDAVYVKRLKWNIPKGIYQVISDNPTYESFEINHKNGR 118

Query: 211 DIEWIARIL 219
           + + I + +
Sbjct: 119 NFKIIGKAI 127


>gi|315656752|ref|ZP_07909639.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492707|gb|EFU82311.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 146

 Score = 62.5 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +   +      +    SM+      GD LI++ +++ + G+ ++     
Sbjct: 43  YFDRDIDLNEHLIRNRPATFLVRVAGDSMINAGISDGDELIVDRSLEASEGNVVIAIID- 101

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G++  K L        +L   N  YP   +  S+++    +
Sbjct: 102 GEMTVKRLHFGTHGP-ELHPANPTYP--ILHPSELQIWGVV 139


>gi|301063310|ref|ZP_07203855.1| repressor LexA [delta proteobacterium NaphS2]
 gi|300442607|gb|EFK06827.1| repressor LexA [delta proteobacterium NaphS2]
          Length = 221

 Score = 62.5 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 53/221 (23%), Gaps = 34/221 (15%)

Query: 6   HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIFKIL 62
            ++I+  I        +  T   +A +  L  T    +  R                   
Sbjct: 11  QEEIFGFIQEYLNGKGVPPTQKEIAERFNLKGTYGVRQHLRL------------------ 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                   +   +                + +            G    G     V   E
Sbjct: 53  -------MEKKGVIRLVRGKARGIRVTSSIFHESDQAIRKIPLLGRIAAGRPLLAVEEVE 105

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                             + Q  SM+    + GDI I+N   +V  G+   +     +  
Sbjct: 106 EVLNIGADVFRGQNLFALRVQGDSMINAGIKAGDIAIINQQPEVQNGEIAAVILD-DEAT 164

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219
            K ++  R   I L + N  Y    V       +    + +
Sbjct: 165 LKRVMLDRD-RIFLKAENDLYQDIIVFPDSNQRLHIAGKFV 204


>gi|71065549|ref|YP_264276.1| S24 family peptidase [Psychrobacter arcticus 273-4]
 gi|71038534|gb|AAZ18842.1| merops peptidase family S24 [Psychrobacter arcticus 273-4]
          Length = 239

 Score = 62.5 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 60/207 (28%), Gaps = 16/207 (7%)

Query: 18  ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
            +  ++  G A  A     +       G          ++  K + ++        + P 
Sbjct: 35  AKRGVSKEG-ALAAAEKYNADANYILSGSSPNTTVSDLKAKIKTMQSSTIQSTTNPNDPE 93

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
              R       +  +       +G F D       +  + +  P+  S          + 
Sbjct: 94  GTLRVPVDYRMDGYVPVISWVAAGSFSDVMPVTIDDVIDWIPRPQHLS---------KRA 144

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRTG-DIVAKVLIS-RRGRS 192
                Q  SM P ++  +I+ +   I       GD ++I          K LI       
Sbjct: 145 FGLIIQGRSMWPEFKPDEIIYVEPEIAPWDLKDGDLVVIHCNDDKQATFKQLIMGNGPED 204

Query: 193 IDLMSLNCCYPVD-TVEMSDIEWIARI 218
           + L  LN  +P    V M +   +  +
Sbjct: 205 MYLKPLNPDWPDQKIVPMGECMLVGIV 231


>gi|21233742|ref|NP_640040.1| DNA polymerase V subunit UmuD [Proteus vulgaris]
 gi|21202926|dbj|BAB93642.1| UV protection and mutation protein [Proteus vulgaris]
          Length = 138

 Score = 62.5 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 103 FFDSGVFPTGNKWNTVGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
            F   + P G               +  +          +   TSM+      GDI+I++
Sbjct: 15  PFFEALIPAGFPSPASDYSKNNIDLNELLITHPAGTYFLRVSGTSMIDANISDGDIVIVD 74

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           S++Q N G+ ++     G+   K L      +  L+ +N  +    + 
Sbjct: 75  SSLQANDGNIVIASID-GEFTVKQLQKTPFPA--LIPMNPDFSPIPIP 119


>gi|159903249|ref|YP_001550593.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888425|gb|ABX08639.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           MIT 9211]
          Length = 153

 Score = 62.5 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +        +  +          K +  SM     + GD+LI++ ++    G  ++
Sbjct: 37  ADDYID--AGIDLNEHLILHPASTFFLKVKGFSMTNAGIQNGDLLIVDRSLDAQPGCIVV 94

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                G    K L   +  ++ L + +  YP   +   D   I  +
Sbjct: 95  AILD-GCFTLKRLTRHK-ETLYLEAEHPNYPAIDMRHYDNVQIWGV 138


>gi|227512107|ref|ZP_03942156.1| possible XRE family transcriptional regulator [Lactobacillus
           buchneri ATCC 11577]
 gi|227084661|gb|EEI19973.1| possible XRE family transcriptional regulator [Lactobacillus
           buchneri ATCC 11577]
          Length = 94

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 6/90 (6%)

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
               +    SM  +   G I +     +V  GD   +     +   K       R++ L 
Sbjct: 1   MFALQVDGDSMSKVIAPGFIAVFAKDCEVENGDICAVLVDGENATLKRF-KETSRAVILE 59

Query: 197 SL--NCCYPVDTVEMS---DIEWIARILWA 221
               N  Y           D   + + ++A
Sbjct: 60  PESFNPIYKPLIFPKGIERDFIILGKYVFA 89


>gi|291286857|ref|YP_003503673.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884017|gb|ADD67717.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 244

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 64/251 (25%), Gaps = 43/251 (17%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            + H  I E I  +    N T   +A    +   ++   ++ G         +  I KI 
Sbjct: 1   MYKH--IGEKIKDLRRIKNYTQVKIADILSITYQTYQHHEKTGN------FDSHKIIKIA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A          +   +   +  K +    L                   N +  + V E
Sbjct: 53  NALGV---DYNTIFDLETPASLAKNRYSSPLVSSDVQVYYGNIPPDVINKNAFEFIPVRE 109

Query: 123 IRSPHNGIYA-------------------IQTQDTRHKTQDTSMLPLYRKGDILILN--- 160
             S                             +      +D SM P   KGDI  +    
Sbjct: 110 TESLAGSSVMRITNNKTLRWVCVPNSASNKFCELKAFHIRDDSMEPHLCKGDIAGVCIYK 169

Query: 161 --SAIQVNCGDRLLIKPRTG----DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE- 213
               +     + +               K     + + + L+  N  +    V +S+   
Sbjct: 170 AVPDLNSLNSEFIYFCQLDDNYGTGYTFKKAKVIKEQFLTLIPENRTHDAIVVNLSEENA 229

Query: 214 ---WIARILWA 221
               I R++W 
Sbjct: 230 SNPIIGRVVWI 240


>gi|324017929|gb|EGB87148.1| peptidase S24-like domain protein [Escherichia coli MS 117-3]
          Length = 103

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
              ++ V +      +             +    SM+  YR GD++ ++  +    GD +
Sbjct: 9   EVGYSEVDL-STAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDV 67

Query: 172 LI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
           +     +G+   K LI    +   L +LN  +P   +
Sbjct: 68  IALMHDSGETTFKRLIEDGTQRY-LKALNPNWPEPYI 103


>gi|261207290|ref|ZP_05921978.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|260078505|gb|EEW66208.1| conserved hypothetical protein [Enterococcus faecium TC 6]
          Length = 224

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 46/172 (26%), Gaps = 15/172 (8%)

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + +   A   T+ +      +         +E        +                 +
Sbjct: 53  ELAEKANAAGMTLNRTKTDRGNIMTVLSSDIQEYNFFDTSVAAGIPSSVEAF-----DQD 107

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLI 173
            +    I     G YA        K    SM  +   G ++ +       ++  GD ++ 
Sbjct: 108 HIEQIAIPDYAMGKYAGYQDVFFTKINGDSMNNVIPDGSLIAVKKIESCDELKDGDIVV- 166

Query: 174 KPRTGDIVAKVLIS-RRGRSIDLMSL--NCCYPVDTVEMSD---IEWIARIL 219
                +   K  I+ ++   I       N  +    V   D   ++   +++
Sbjct: 167 FSNDNEFSVKRYINDQQNNRIIFRPDSSNISFTDIVVNYDDTKYVQIYGKVV 218


>gi|260889363|ref|ZP_05900626.1| putative LexA repressor [Leptotrichia hofstadii F0254]
 gi|260860774|gb|EEX75274.1| putative LexA repressor [Leptotrichia hofstadii F0254]
          Length = 187

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 10/166 (6%)

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---- 114
            K+       + ++L   F +      K++E  +     +        G+   GN     
Sbjct: 4   QKLDTNLLIALSKVLKKDFIEMLGHNPKKQESNVSNEIFTSFIQIPIYGMASAGNGLIEM 63

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDR 170
              V   E  S  N    ++ +D   + +  SM P Y  GDI++++       ++  G  
Sbjct: 64  DENVEEIEYISIPNINKNVKKRDFACRVRGDSMEPHYHDGDIIVVDVQDGIDIRILNGQE 123

Query: 171 LLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWI 215
             +  +      K +    G  ++ L S N  Y    +   +++ +
Sbjct: 124 -ALIYQEDSKYLKRVFFEEGTGNLILKSYNPAYADYIIPNHELDKV 168


>gi|329297965|ref|ZP_08255301.1| Repressor protein CI [Plautia stali symbiont]
          Length = 171

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                      SM   +   D L ++ ++    GD + +      +  K L  +  + + 
Sbjct: 74  ENIRLIALNSDSMAGTFAPRDQLFVDISVHRFDGDGIYLFNLDNQLYLKRLQLQH-KKVA 132

Query: 195 LMSLNCCYPVDTVEMSD---IEWIARILWASQ 223
           ++S N  Y    + + +   ++ IAR++  SQ
Sbjct: 133 VISDNKRYETWYLTLDEAASLQVIARVIM-SQ 163


>gi|282879905|ref|ZP_06288630.1| peptidase, S24 family [Prevotella timonensis CRIS 5C-B1]
 gi|281306207|gb|EFA98242.1| peptidase, S24 family [Prevotella timonensis CRIS 5C-B1]
          Length = 152

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              + +    +  +          +    SM+ +    GDI +++ A +    D ++   
Sbjct: 32  EDYLQDRIDFNRDLIKHPEATFYGRVSGDSMVGVGIYDGDIAVIDRAEEPKDKDIVV-AY 90

Query: 176 RTGDIVAKVLI--SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G+   K L     +   I+LM  N  +    V   D   I  ++
Sbjct: 91  VNGEFTLKFLNTAHAQEGYIELMPANENFKPIKVVNDDDFEIWGVV 136


>gi|330996118|ref|ZP_08320011.1| peptidase S24-like protein [Paraprevotella xylaniphila YIT 11841]
 gi|329573889|gb|EGG55470.1| peptidase S24-like protein [Paraprevotella xylaniphila YIT 11841]
          Length = 169

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 10/99 (10%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               +  +   +      +    SM       GD+++++ +++   GD ++     G+  
Sbjct: 62  GIDLNKELVRHRETTFYARVSGHSMAGAGIEDGDLVVVDKSLEARTGDYVVACID-GEFT 120

Query: 182 AKVLISRRGRSI-DLMSLNCCYPVDTVEMSDIEWIARIL 219
            K            L+  N  +    +   +   +  ++
Sbjct: 121 LKQFRLDAANCCAWLVPANEEFQPIKITGENDFRVWGVV 159


>gi|262042207|ref|ZP_06015379.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259040440|gb|EEW41539.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 148

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 10/133 (7%)

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNGIYAIQ 134
                             P   +   F       FP+    + V   +    +       
Sbjct: 1   MRTEPHFSPTVLQVHPQTPARLAIPLFSEACPAGFPSPAG-DYVE--QELDLNTLCIRHP 57

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
           +     +    SM  +    GDILI++ A     GD ++ +   G    K L  R     
Sbjct: 58  SATYFLRASGESMRDIGLHDGDILIVDRAETAQEGDIVIAEIDRG-FTVKRLRLRP--RP 114

Query: 194 DLMSLNCCYPVDT 206
            L  +N  YP   
Sbjct: 115 ALEPMNPDYPTLY 127


>gi|146318705|ref|YP_001198417.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|146320914|ref|YP_001200625.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|253751815|ref|YP_003024956.1| phage repressor-like protein [Streptococcus suis SC84]
 gi|253753638|ref|YP_003026779.1| phage repressor-like protein [Streptococcus suis P1/7]
 gi|253755481|ref|YP_003028621.1| phage repressor-like protein [Streptococcus suis BM407]
 gi|145689511|gb|ABP90017.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145691720|gb|ABP92225.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
 gi|251816104|emb|CAZ51727.1| putative phage repressor-like protein [Streptococcus suis SC84]
 gi|251817945|emb|CAZ55723.1| putative phage repressor-like protein [Streptococcus suis BM407]
 gi|251819884|emb|CAR45913.1| putative phage repressor-like protein [Streptococcus suis P1/7]
 gi|292558385|gb|ADE31386.1| Helix-turn-helix motif containing protein [Streptococcus suis GZ1]
 gi|319758167|gb|ADV70109.1| transcriptional regulator [Streptococcus suis JS14]
          Length = 266

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 73/264 (27%), Gaps = 59/264 (22%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW--PSTESIFKILAATN 66
           + + +     ++ L+    A  +GL     +  ++       +   P+ +++ K+     
Sbjct: 3   LGDILKEYRSKNKLSMDKFAELSGLTKGYISMLEKNQHPKTKKALLPTMDTLEKVAKGMA 62

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTG----- 112
            ++ +L++   S+             L+  P             G F +     G     
Sbjct: 63  ISVGELIEQLDSNQDIALTITPSQFKLFQQPIHPEVLTLDNELKGDFHAQWLTFGQEQLA 122

Query: 113 --------------NKWNTVGVPEIRSP----------------------HNGIYAIQTQ 136
                         +  +     E+  P                      ++ I   Q+ 
Sbjct: 123 AMQTASVTPSASILHLDDYRERIELPVPGKVSAGTGYWQDTDMNNLVSFYNDEIPDNQSY 182

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
           DT  +    SM P    GD L +     +      +     G+   K           L 
Sbjct: 183 DTIAQVVGDSMAPHIEDGDYLFIRLTPHIPLNTIGI-FSVNGENFVKKFKGD-----YLQ 236

Query: 197 SLNCCYPVDTV-EMSDIEWIARIL 219
           SLN  Y         DI  I +++
Sbjct: 237 SLNSDYDDIYFSPEDDIRPIGQVV 260


>gi|313157271|gb|EFR56698.1| peptidase S24-like protein [Alistipes sp. HGB5]
          Length = 294

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 6/125 (4%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS-MLPLYRKG 154
           P         +  FP  +    V V  +   +  +          K +  S +       
Sbjct: 160 PALFERRAIRASYFPASD----VPVAGLVDLNEELIPNPISTFFGKVRGISLIEDDIEDS 215

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           D +I++  ++   GD  +    +     K +       I LM  N  Y    +   +   
Sbjct: 216 DSVIVDRMLEPRWGDLAV-CVTSEGFTMKYVEVHDDGEIWLMPGNKDYAPIRITGENERL 274

Query: 215 IARIL 219
           I  I+
Sbjct: 275 IWGIV 279


>gi|41189526|ref|NP_958626.1| 77ORF011 [Staphylococcus phage 77]
 gi|40557227|gb|AAR87883.1| 77ORF011 [Staphylococcus phage 77]
          Length = 255

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 10/167 (5%)

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            I  I +       + +    ++    + K   I         S          TG    
Sbjct: 94  KINNIFSQLTPPRQENVLNYANEQLDEQNKVTSIDEYKESKLVSYIACG----ATGAGIG 149

Query: 117 TVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                +I          +T    D        SM P+ ++G    +     +  G   L+
Sbjct: 150 EELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDSIKDGTIALV 209

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
               G  + K +       I+L+SLN  Y    V   SDI+ + +++
Sbjct: 210 VLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSDIKVMGKVV 254


>gi|304412271|ref|ZP_07393879.1| transcriptional repressor, LexA family [Shewanella baltica OS183]
 gi|307306055|ref|ZP_07585800.1| transcriptional repressor, LexA family [Shewanella baltica BA175]
 gi|304349306|gb|EFM13716.1| transcriptional repressor, LexA family [Shewanella baltica OS183]
 gi|306910928|gb|EFN41355.1| transcriptional repressor, LexA family [Shewanella baltica BA175]
          Length = 206

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 55/214 (25%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A + G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIADTGMPPTRAEIATRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                                      G    G    G    
Sbjct: 45  EHLKALAKKGYIEIMPGTSRGIRLPAE-----------VEDLTETGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + +  SM  +   +GD+L ++   Q   G  + +  
Sbjct: 94  AQEHVEQYYQVDPSMFHPAADFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K    + G  + L + N  Y    V++
Sbjct: 153 VDDDVTVKRFEKK-GNVVYLHAENEDYSPIKVDL 185


>gi|298346790|ref|YP_003719477.1| SOS mutagenesis protein UmuD [Mobiluncus curtisii ATCC 43063]
 gi|304389506|ref|ZP_07371469.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236851|gb|ADI67983.1| SOS mutagenesis protein UmuD [Mobiluncus curtisii ATCC 43063]
 gi|304327316|gb|EFL94551.1| SOS mutagenesis and repair protein UmuD [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 146

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +   +      +    SM+      GD LI++ +++ + G+ ++     
Sbjct: 43  YFDRDIDLNEHLIRNRPATFLVRVAGDSMINAGISDGDELIVDRSLEASEGNVVIAIID- 101

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G++  K L        +L   N  YP   +  S+++    +
Sbjct: 102 GEMTVKRLHFGTHGP-ELHPANPTYP--ILHPSELQIWGVV 139


>gi|223932319|ref|ZP_03624322.1| putative phage repressor [Streptococcus suis 89/1591]
 gi|302023839|ref|ZP_07249050.1| phage repressor-like protein [Streptococcus suis 05HAS68]
 gi|223899000|gb|EEF65358.1| putative phage repressor [Streptococcus suis 89/1591]
          Length = 266

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 73/264 (27%), Gaps = 59/264 (22%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW--PSTESIFKILAATN 66
           + + +     ++ L+    A  +GL     +  ++       +   P+ +++ K+     
Sbjct: 3   LGDILKEYRSKNKLSMDKFAELSGLTKGYISMLEKNQHPKTKKALLPTMDTLEKVAKGMA 62

Query: 67  ETICQLLDLPFSDGRTTEKKEKE---------IPLLYFPPSGSGGFFDSGVFPTG----- 112
            ++ +L++   S+                    P +    +   G F +     G     
Sbjct: 63  ISVGELIEQLDSNQDIALTITPSQFKLFQQPIHPEVQTLDNELKGDFHAQWLTFGQEQLA 122

Query: 113 --------------NKWNTVGVPEIRSP----------------------HNGIYAIQTQ 136
                         +  +     ++  P                      ++ I   Q+ 
Sbjct: 123 AMQTTSITPSASILHLDDYRERIDLPVPGKVSAGTGYWQDTDMNNLVSFYNDEIPDNQSY 182

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
           DT  +    SM P    GD L +     +      +     G+   K           L 
Sbjct: 183 DTIAQVVGDSMAPHIEDGDYLFIRLTPHIPLNTIGI-FSVNGENFVKKFKGD-----YLQ 236

Query: 197 SLNCCYPVDTV-EMSDIEWIARIL 219
           SLN  Y         DI  I +++
Sbjct: 237 SLNSDYDDIYFSPEDDIRPIGQVV 260


>gi|126641222|ref|YP_001084206.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978]
 gi|293608694|ref|ZP_06690997.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|126387106|gb|ABO11604.1| DNA polymerase V component [Acinetobacter baumannii ATCC 17978]
 gi|292829267|gb|EFF87629.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 164

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +   +T     K    SML       D LI++ ++    GD ++      +   
Sbjct: 61  LDMNEHLIKNETATFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVIALID-NEFTV 119

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L+        L + N  Y    ++      I  ++
Sbjct: 120 KRLMIDEKGQ-WLKAENPEYKNIYLQEGQELIIWGVV 155


>gi|50085790|ref|YP_047300.1| component of DNA polymerase V [Acinetobacter sp. ADP1]
          Length = 208

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V +    +  +   +      K    SML       D LI++ +I    GD ++      
Sbjct: 98  VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 156

Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K L          + L + N  +    ++      I  ++
Sbjct: 157 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVIWGVV 200


>gi|258616309|ref|ZP_05714079.1| LexA repressor [Enterococcus faecium DO]
          Length = 68

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +I+        GD ++      +   K     +     L   N       +    +  + 
Sbjct: 1   MIVRKQETAQNGDIVIAMTAEDEATCKRFYKEKN-FFRLQPENDLLEPIIL--DQVSILG 57

Query: 217 RIL 219
           R++
Sbjct: 58  RVV 60


>gi|220923486|ref|YP_002498788.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
 gi|219948093|gb|ACL58485.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
          Length = 220

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 57/206 (27%), Gaps = 32/206 (15%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +   ++ S LAR+ G    + ++             S E +  +       +   
Sbjct: 13  LAAALQASGVSASELARRLGTSRQNVHRWADG---------SRELLPPVAQLIASKLGVS 63

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                          +   L+      +                 + +P+  S       
Sbjct: 64  ASALLLMEEAGPSYIRVAGLVGAGGHINNDVTQVHQNEAVRVRINIPLPDGLS------- 116

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDIVAKVLIS-R 188
                  ++    SMLP Y  GD++I+           GD  L+K   G+   K ++   
Sbjct: 117 ------AYEVWGDSMLPRYDPGDLIIVTDQPVPVSRVVGDVALVKTADGNRYLKRVLRGS 170

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEW 214
                 L S N         M D+E 
Sbjct: 171 EPDLYTLESYNAS------PMEDVEI 190


>gi|260222825|emb|CBA32780.1| hypothetical protein Csp_B15740 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 90

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 139 RHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
             K +  SM       GD+L + +      G  ++ +    ++  K    R    I+L +
Sbjct: 1   MLKVRGMSMRDAGIMDGDLLAVQATKDAKNGQIIVAR-LGEEVTVKRF-RRNKHLIELHA 58

Query: 198 LNCCYPVDTVEMSD 211
            N  Y    VE  +
Sbjct: 59  ENPDYQTIVVEPGE 72


>gi|182436872|ref|YP_001824591.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326777467|ref|ZP_08236732.1| helix-turn-helix domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465388|dbj|BAG19908.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657800|gb|EGE42646.1| helix-turn-helix domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 210

 Score = 62.1 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  RH +T + LA + G+  ++ ++ +     G  R P+ E +  +       
Sbjct: 26  VGPRLRELRRRHGMTLAELAERTGISESTLSRLE-----GGTRKPTLELLLPLAEVHAVP 80

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+  P +       +      L + P    G   +         +T           
Sbjct: 81  LDELVGAPRTGDPRIHLRPVTRDGLTYVPLSRPGGVQAHKLLIPPGPDTEPTLRTHEGFE 140

Query: 129 GIYAIQTQDTRH 140
            +Y +  +    
Sbjct: 141 WLYVLAGRLRLI 152


>gi|127511903|ref|YP_001093100.1| XRE family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637198|gb|ABO22841.1| transcriptional regulator, XRE family with cupin sensor [Shewanella
           loihica PV-4]
          Length = 182

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 47/153 (30%), Gaps = 9/153 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DIGANLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++     +  S     +   +   LL               +P           P     
Sbjct: 57  SLVDFFSIEESMPTEQKVVYRSGELLDIGDGNLDYKLIGRDYPNRAMSVMNEVYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
              +   + ++     +          GD + +
Sbjct: 117 GEEMLQHEGEEAAMVIEGQL---EITIGDEVYV 146


>gi|269103888|ref|ZP_06156585.1| SOS-response repressor and protease LexA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163786|gb|EEZ42282.1| SOS-response repressor and protease LexA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 208

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 61/215 (28%), Gaps = 32/215 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIKAKIEDSGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  + +           G    G    G    
Sbjct: 46  HLKALARK----------GVLEIVPGASRGIRLLVGANDSDVEESGLPLIGQVAAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 96  AQEHVECHYDVDPTLFKPRADFLLRVNGMSMKNIGIMDGDLLAVHKTQDVRNGQVV-VAR 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + GR + L + N  +    V++ 
Sbjct: 155 VDDDVTVKRLDKQ-GRKVLLHAENEEFDPIVVDLE 188


>gi|153000861|ref|YP_001366542.1| putative prophage repressor [Shewanella baltica OS185]
 gi|160875569|ref|YP_001554885.1| peptidase S24/S26 domain-containing protein [Shewanella baltica
           OS195]
 gi|151365479|gb|ABS08479.1| putative prophage repressor [Shewanella baltica OS185]
 gi|160861091|gb|ABX49625.1| peptidase S24 and S26 domain protein [Shewanella baltica OS195]
 gi|315267756|gb|ADT94609.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           OS678]
          Length = 139

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             K Q  SM       GDIL+++ ++Q   GD ++  
Sbjct: 32  DYVE--QTLDLNELCIKHPAATFFVKVQGDSMIEAGIFSGDILVVDRSLQPAHGDTVVAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
              G+   K L  R    + L+  N  +    + + S++     +
Sbjct: 90  VN-GEFTVKQLQLRP--VVQLLPRNALFSPIAINDESELNIFGVV 131


>gi|126174565|ref|YP_001050714.1| putative prophage repressor [Shewanella baltica OS155]
 gi|217973182|ref|YP_002357933.1| peptidase S24 and S26 domain-containing protein [Shewanella baltica
           OS223]
 gi|304408934|ref|ZP_07390555.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           OS183]
 gi|307302937|ref|ZP_07582692.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           BA175]
 gi|125997770|gb|ABN61845.1| UmuD protein. Serine peptidase. MEROPS family S24 [Shewanella
           baltica OS155]
 gi|217498317|gb|ACK46510.1| peptidase S24 and S26 domain protein [Shewanella baltica OS223]
 gi|304352755|gb|EFM17152.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           OS183]
 gi|306913297|gb|EFN43719.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           BA175]
          Length = 139

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             K Q  SM       GDIL+++ ++Q   GD ++  
Sbjct: 32  DYVE--QTLDLNELCIKHPAATFFVKVQGDSMIEAGIFSGDILVVDRSLQPAHGDTVVAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
              G+   K L  R    + L+  N  +    + + S++     +
Sbjct: 90  VN-GEFTVKQLQLRP--VVQLLPRNALFSPIAINDESELNIFGVV 131


>gi|154483803|ref|ZP_02026251.1| hypothetical protein EUBVEN_01507 [Eubacterium ventriosum ATCC
           27560]
 gi|149735294|gb|EDM51180.1| hypothetical protein EUBVEN_01507 [Eubacterium ventriosum ATCC
           27560]
          Length = 240

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 25/235 (10%)

Query: 3   SFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             ++K I  E I+R+  + N +   LA +A L   S  K     + G+   P+  +I K+
Sbjct: 7   KITNKNIMVENINRLLYQKNWSIRQLADEAELPYESVKKL----VGGKVNNPTIYTISKV 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-----------FP 110
             A N +I  +L     +    +     +  L    +                      P
Sbjct: 63  CDALNCSIDYILGRSVINTIDKKSLPPRVFNLLVEIAYFESRIADYNKSHKTDCISVLTP 122

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQ-----DTRHKTQDTSMLPLYRKGDILILNSAIQV 165
           TG   + +    I +    I A +           K    ++ P Y   DIL++      
Sbjct: 123 TGYVQDGMVFDSISTNIVNISAYKKDFGDIVLCGIKIVGRNLSPTYFDNDILLIGKDRFP 182

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARIL 219
             G+  +       +  +  I   G  ++L  +N       ++   D+ +  R+L
Sbjct: 183 ESGETGIFLI-GNKVYIRKYI--PGIRLELAPINGDKNSLFIDNIDDVHYFGRVL 234


>gi|10957326|ref|NP_058350.1| putative UV protection protein [Salmonella typhi]
 gi|260752149|ref|YP_003237664.1| putative UV protection and repair protein [Escherichia coli O111:H-
           str. 11128]
 gi|7800379|gb|AAF69975.1|AF250878_136 putative UV protection protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|257767619|dbj|BAI39113.1| putative UV protection and repair protein [Escherichia coli O111:H-
           str. 11128]
          Length = 165

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H+ +   +      +    SM+      G IL+++ ++    G  ++     G+   K+L
Sbjct: 63  HDFVVRNRPATFFVRASGLSMVDAGINDGAILVVDRSLTAEHGSIVVALVD-GEFTVKIL 121

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +     + LM  N  +    V    +E    +
Sbjct: 122 QTFP--KLMLMPSNPAFKPIPVNPDTLEIWGVV 152


>gi|18466630|ref|NP_569438.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|160431843|ref|YP_001551957.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis]
 gi|16505946|emb|CAD09832.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|145849064|emb|CAM91628.1| putative serine protease (putative UV protection protein)
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|159885384|dbj|BAF92988.1| putative DNA-repair modulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis]
          Length = 144

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H+ +   +      +    SM+      G IL+++ ++    G  ++     G+   K+L
Sbjct: 42  HDFVVRNRPATFFVRASGLSMVDAGINDGAILVVDRSLTAEHGSIVVALVD-GEFTVKIL 100

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +     + LM  N  +    V    +E    +
Sbjct: 101 QTFP--KLMLMPSNPAFKPIPVNPDTLEIWGVV 131


>gi|294636509|ref|ZP_06714877.1| toxin-antitoxin system, antitoxin component, Xre family
           [Edwardsiella tarda ATCC 23685]
 gi|291090232|gb|EFE22793.1| toxin-antitoxin system, antitoxin component, Xre family
           [Edwardsiella tarda ATCC 23685]
          Length = 141

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCG 168
            N   + + +     I     +      +  SM       P + +G +++++ A  V   
Sbjct: 23  DNAYTLHDAKRRIKTIKRASDKAFWLIVEGASMTAPTGTSPSFPEGMLILVDPAQNVEIN 82

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           D  +      +   K LI   G +  L  LN  +P+        + I +++  SQ
Sbjct: 83  DFCIAVMNGNEFTFKRLIRDGGINY-LQPLNPQFPLLNCANG-CQIIGKVVM-SQ 134


>gi|326576998|gb|EGE26894.1| peptidase S24-like protein [Moraxella catarrhalis O35E]
          Length = 98

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
                  +D SM+P  + GD + ++   +     R+         + K L       + +
Sbjct: 1   NAFAVTARDDSMMPYVQDGDTIYIDKGRKEIKDGRIFAIRFGELCLCKRLYRLPDGGVRI 60

Query: 196 MSLNCC-YPVDT-----VEMSDIEWIARILWAS 222
           +S N   +P        +   + E I  +   S
Sbjct: 61  VSDNSDEFPEQVATKQQISDGEFEVIGWVWSVS 93


>gi|166366552|ref|YP_001658825.1| SOS-response transcriptional repressor [Microcystis aeruginosa
           NIES-843]
 gi|166088925|dbj|BAG03633.1| SOS-response transcriptional repressor [Microcystis aeruginosa
           NIES-843]
          Length = 204

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 5/180 (2%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I      PS   + + +   +    Q            +  E +   L 
Sbjct: 11  QQELYDWLIEYISTTQHAPSIRQMMRAMNLRSPAPIQSRLERLRAKGYIDWTEGKARTLR 70

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153
                  G    G    G         E +   + +          +    SM       
Sbjct: 71  ILKQPVQGLPVLGAIAAGGLVEPFTDVEEKLDLSNLLQRSQDCYALRVSGDSMIEDHIAD 130

Query: 154 GDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           GD++I+ S      V+ G+ +  +        K    + G  I L   N  Y   T    
Sbjct: 131 GDLVIMRSLTGNEAVSNGEIVAARVEGHGTTLKRFY-QEGEIITLQPSNQKYQPITANTE 189


>gi|126662465|ref|ZP_01733464.1| putative UmuD/RumA DNA repair protein [Flavobacteria bacterium
           BAL38]
 gi|126625844|gb|EAZ96533.1| putative UmuD/RumA DNA repair protein [Flavobacteria bacterium
           BAL38]
          Length = 145

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            S  + +   +      K    SM+      GDIL+++ +++       +     G+   
Sbjct: 43  LSLDHLLIKNREATFYAKASGNSMIGAGIDDGDILVIDRSLEPRNNAIAVCFID-GEFTV 101

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +  +    + L+  N  Y    V   +   I  I+
Sbjct: 102 KRI-KKENDEVYLIPENAQYKAIKVAPENELIIWGIV 137


>gi|300309564|ref|YP_003773656.1| peptidase S24 LexA-like protein [Herbaspirillum seropedicae SmR1]
 gi|300072349|gb|ADJ61748.1| peptidase S24 LexA-like protein [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
            +Q         +M P   +GD+L+L++    +  D L      G +V + L  R    I
Sbjct: 174 PSQLALIDMNGDAMAPTVAQGDLLLLDTRSAQSWRDGLYAIAVNGMLVVRRLCQRLSGQI 233

Query: 194 DLMSLNCCYPVDTVEMSDI---EWIARILW 220
           ++ + N  Y V+T++   +   + + R++W
Sbjct: 234 EIGADNPFYGVETLDAQQVARLDIVGRVVW 263


>gi|299769832|ref|YP_003731858.1| DNA polymerase V component [Acinetobacter sp. DR1]
 gi|298699920|gb|ADI90485.1| DNA polymerase V component [Acinetobacter sp. DR1]
          Length = 165

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +   +T     K    SML       D LI++ ++    GD ++      D   
Sbjct: 61  LDMNEHLIKNETATFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVVALID-NDFTV 119

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L+        L + N  Y    +       I  ++
Sbjct: 120 KRLMIDEKGQ-WLKAENPDYKDIHLLDGQELIIWGVV 155


>gi|149196416|ref|ZP_01873471.1| putative SOS mutagenesis protein UmuD [Lentisphaera araneosa
           HTCC2155]
 gi|149140677|gb|EDM29075.1| putative SOS mutagenesis protein UmuD [Lentisphaera araneosa
           HTCC2155]
          Length = 127

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           H+ +          +    SM       GDIL+++ ++Q    D ++     G+   K L
Sbjct: 30  HDHLIKHPCASFFLRVGGESMKGAGIYPGDILVVDRSLQAQKSDIVIAII-EGEFTVKQL 88

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDI 212
              +     L++ N  Y     +  +I
Sbjct: 89  KFNQHGKPRLIAANRAYAPIECDNIEI 115


>gi|11640723|gb|AAG39344.1| RulA [Pseudomonas syringae pv. pisi]
          Length = 141

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 8/129 (6%)

Query: 95  FPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150
              SG    F S   P G      + +           + A        K    SM    
Sbjct: 9   LSESGKVIPFYSFKIPAGFPNPAADHIEQDSSFDRLMDLRA--PHIYVAKIDGDSMEGAK 66

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
                +++++ +   + G  ++      + + K+LI +    + L S N  YP   +   
Sbjct: 67  IFHDSLVVVDRSRTPSSGSIVIAALN-NEPLCKILILQGDD-VVLKSANPAYPARHILEG 124

Query: 211 DIEWIARIL 219
           D   I  ++
Sbjct: 125 DELSIWGVV 133


>gi|327405551|ref|YP_004346389.1| helix-turn-helix domain-containing protein [Fluviicola taffensis
           DSM 16823]
 gi|327321059|gb|AEA45551.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823]
          Length = 273

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 26/233 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+   +  + +    +   +A   GL  +S++  +    E     P  +++  + +    
Sbjct: 2   KLGNNLKLVRKSKKKSQEEVAADLGLTRSSYSGYENQIAE-----PGIDTLIALSSYYGV 56

Query: 68  TICQ------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            I                    S             L     +      +         +
Sbjct: 57  PIDALLTKDFSTFTDSDWTTISSGLYADINGNNLRVLTSLVDADDNEMIELIPQQARAGY 116

Query: 116 NTVGVPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCG 168
            T             +++       +         SM P+     ++   + +   V  G
Sbjct: 117 TTGYADPDYLKVLPTFSLPFLSKNRKYRSFPIVGDSMPPVDEGSFVVAEYIQNWGSVRNG 176

Query: 169 DRLLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              ++  +   IV K++       +S +L S N  Y    V +++I  + + +
Sbjct: 177 TPCIVVTKDDGIVFKIVNNFIETQQSFELCSTNPLYLPYYVNVNEIVEMWKFV 229


>gi|256556935|gb|ACU83558.1| SOS-response transcriptional repressor [uncultured bacterium
           HF130_AEPn_1]
          Length = 204

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 10/114 (8%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G         E   P  G      +    + +  SM      + D++ +        
Sbjct: 90  VSAGTGILAEENVETYLPDLG----GGESFVLRVRGDSMKDAGIYEDDLVYVEQKALPRN 145

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARI 218
           GD ++      +   KV  +     I L+  N  Y V +    D   I  +  +
Sbjct: 146 GDIVVAL-VENEATIKVYENHEN-VIRLIPRNSSYKVQSFNSEDEHRINIVGVV 197


>gi|325267659|ref|ZP_08134310.1| hypothetical protein HMPREF9098_2038 [Kingella denitrificans ATCC
           33394]
 gi|324980783|gb|EGC16444.1| hypothetical protein HMPREF9098_2038 [Kingella denitrificans ATCC
           33394]
          Length = 270

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 9/169 (5%)

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K  A T   I + +    ++      ++    ++      +        +  G +  T  
Sbjct: 97  KTPARTGGGIPEFMRPMVAEYDDWAAEQGTDSIVPVRYHTNVFGSAGNGYAFGEELRTEA 156

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +    S  + +          + +  SM P       ++         G  + +  +  +
Sbjct: 157 MWFRSSFFDVLGVKPAHCFCTRVKGDSMYPTLTDRGTVL-WQMTSRYTGAGIYLFRQVDE 215

Query: 180 IVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDI-----EWIARILW 220
           +  K L    G +  ++S N     YP +T+++ ++     E   R LW
Sbjct: 216 LRIKRLQQINGHTFSVISDNANKDIYPTETLDLREMQDYEFEVYGRYLW 264


>gi|9635195|ref|NP_058469.1| repressor [Staphylococcus phage PVL]
 gi|21283665|ref|NP_646753.1| phage repressor [Staphylococcus aureus subsp. aureus MW2]
 gi|29028670|ref|NP_803358.1| cI-like repressor [Staphylococcus phage phi13]
 gi|49486810|ref|YP_044031.1| putative repressor [Staphylococcus aureus subsp. aureus MSSA476]
 gi|88195908|ref|YP_500719.1| repressor [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|258444476|ref|ZP_05692809.1| repressor [Staphylococcus aureus A8115]
 gi|282929202|ref|ZP_06336778.1| CI-like repressor [Staphylococcus aureus A9765]
 gi|300912914|ref|ZP_07130352.1| bifunctional S24 family peptidase/transcriptional regulator
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|3341939|dbj|BAA31905.1| repressor [Staphylococcus phage PVL]
 gi|18920594|gb|AAL82333.1| cI-like repressor [Staphylococcus phage phi13]
 gi|21205106|dbj|BAB95801.1| phage repressor [Staphylococcus aureus subsp. aureus MW2]
 gi|49245253|emb|CAG43726.1| putative repressor [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87203466|gb|ABD31276.1| repressor [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|257850367|gb|EEV74316.1| repressor [Staphylococcus aureus A8115]
 gi|282591847|gb|EFB96894.1| CI-like repressor [Staphylococcus aureus A9765]
 gi|300885692|gb|EFK80899.1| bifunctional S24 family peptidase/transcriptional regulator
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|320139618|gb|EFW31487.1| peptidase S24-like domain protein [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 256

 Score = 61.7 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 68/258 (26%), Gaps = 48/258 (18%)

Query: 6   HKKIWEAIDRMAERHNLTPSGL-------ARKAGLD--PTSFNKSKRFGIEGRNRWPSTE 56
            +K+   +  + +  NL    +        +K G+    ++ ++                
Sbjct: 2   REKVSNRLKHIMKIRNLKQVDIINKSKPYQKKLGISLSKSTLSQYINDVQS--PDQDRIY 59

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF------- 109
            + K L      +       +       + E  +  +    S         V        
Sbjct: 60  LLSKTLNVGEAWLMGYDVDSYRVPDEERQDETIMSKINNIFSQLTPPRQENVLNYANEQL 119

Query: 110 ------------------------PTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKT 142
                                    TG         +I          +T    D     
Sbjct: 120 EEQNKVTSIDGYKESKLVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILV 179

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P+ ++G    +     +  G   L+    G  + K +       I+L+SLN  Y
Sbjct: 180 NGDSMEPMLKQGTYAFIKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKY 237

Query: 203 PVDTV-EMSDIEWIARIL 219
               V   SDI+ + +++
Sbjct: 238 DDIKVASFSDIKVMGKVV 255


>gi|313200782|ref|YP_004039440.1| phage repressor [Methylovorus sp. MP688]
 gi|312440098|gb|ADQ84204.1| putative phage repressor [Methylovorus sp. MP688]
          Length = 189

 Score = 61.7 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                   M PL   GD + ++       GD L    + G I  K +  R   S+ +   
Sbjct: 96  LVHVYGDGMEPLLSDGDEVFIDIRCNAFDGDALYAIRQHGRITIKRVQVRLDGSVAIKYD 155

Query: 199 NC-CYPVDTVEMS---DIEWIARIL 219
           N   +P++        D+E + +++
Sbjct: 156 NDGGFPIEVYSAENAKDVEVVGKVM 180


>gi|326319247|ref|YP_004236919.1| peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376083|gb|ADX48352.1| Peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 231

 Score = 61.7 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 9/177 (5%)

Query: 51  RWPSTESIFKILAATNETICQLLDL-----PFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
           R  S +++  I +                   +          E+  L+           
Sbjct: 49  RAVSDKTVRHIESLRGMHAWFSQPPAPAGIRETSVAYDFDAGPEMYELFPVSLHLRPGIA 108

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
                         +   R        +       + +   M P  + GDI+++N++   
Sbjct: 109 DYAIWPDETDEDAPITFHRHWLERRGYMPQCLLAIRVRGCGMEPSIQAGDIVVVNTSDTT 168

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219
               ++      G+++ + +    G    L   N     YP       D   I R++
Sbjct: 169 LRDGQVFAINGFGEVLLRRVQRD-GGRWWLSCDNPDQARYPRKAWAEPDCIPIGRLV 224


>gi|254468433|ref|ZP_05081839.1| LexA/MucA/RumA/RuvA family protein [beta proteobacterium KB13]
 gi|207087243|gb|EDZ64526.1| LexA/MucA/RumA/RuvA family protein [beta proteobacterium KB13]
          Length = 194

 Score = 61.7 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 3/100 (3%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                 +  + +        + +  SM+       DI+I++ +   +  D +L     G+
Sbjct: 89  ESRLDLNEYLISQTEATFFVRIKGDSMIDAGILDNDIVIVDRSKSASINDIVLASID-GE 147

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              KVL     +   LM  N  +    +E      I  ++
Sbjct: 148 FTVKVLAK-NNKRPYLMPANKEFKPIYIEEGSQFEIWGVV 186


>gi|157100474|emb|CAG69478.2| component of DNA polymerase V [Acinetobacter sp. ADP1]
          Length = 203

 Score = 61.7 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V +    +  +   +      K    SML       D LI++ +I    GD ++      
Sbjct: 93  VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 151

Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K L          + L + N  +    ++      I  ++
Sbjct: 152 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVIWGVV 195


>gi|284800199|ref|ZP_06390602.1| component of DNA polymerase V [Neisseria subflava NJ9703]
 gi|284795726|gb|EFC51073.1| component of DNA polymerase V [Neisseria subflava NJ9703]
          Length = 193

 Score = 61.7 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +    +  +    +     ++   SML     K DI+I++ +     GD + +     + 
Sbjct: 83  DYLDFNEYLITNPSATFAARSGGYSMLDAGIGKDDIMIIDRSKTPKHGDIV-MADVGNEF 141

Query: 181 VAKVLISRRGRSIDLMSLNC--CYPVDTVEMSD 211
             K L    GR  +L S N    YP    + SD
Sbjct: 142 TIKRLYKVPGRKPELHSENASGEYPDFIPDDSD 174


>gi|332711665|ref|ZP_08431596.1| SOS-response transcriptional repressor, LexA [Lyngbya majuscula 3L]
 gi|332349643|gb|EGJ29252.1| SOS-response transcriptional repressor, LexA [Lyngbya majuscula 3L]
          Length = 210

 Score = 61.7 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 42/177 (23%), Gaps = 6/177 (3%)

Query: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                      I   +  PS   + + +   +    Q            +  E +   + 
Sbjct: 8   QQELYDWLVNYIRVSHHAPSIRQMMRAMNLRSPAPIQSRLEHLRSKGYIDWTEGKARTIR 67

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRK 153
                + G    G    G               +G +         +    SM   L  +
Sbjct: 68  LLRHSNLGVPVLGAIAAGGLVEPFTDTVEELNISGFFHQPGN-FALRVTGDSMIEDLITE 126

Query: 154 GDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
           GD++I+           G  +  +        K    + G  + L   N  Y    V
Sbjct: 127 GDVVIMRPVPDPDDIKNGLIVAARVDGHGTTLKRFYRK-GHKVTLKPSNAKYHPIEV 182


>gi|262278728|ref|ZP_06056513.1| SOS-response transcriptional repressor [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259079|gb|EEY77812.1| SOS-response transcriptional repressor [Acinetobacter calcoaceticus
           RUH2202]
          Length = 203

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ ++    GD ++     
Sbjct: 92  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSLPAKSGDIVIALID- 150

Query: 178 GDIVAKVLISRRG---RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            D   K L+         I L + N  Y    +E      I  ++
Sbjct: 151 NDFTVKRLMIDNNYHPPKIWLKAENSDYQNIYIEEGQELVIWGVV 195


>gi|300717122|ref|YP_003741925.1| DNA polymerase V, subunit D [Erwinia billingiae Eb661]
 gi|299062958|emb|CAX60078.1| DNA polymerase V, subunit D [Erwinia billingiae Eb661]
          Length = 139

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 13/134 (9%)

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
                     + + +  F    + GF            + V        +  + +  +  
Sbjct: 1   MHMHQLVVSPRPLTIPLFVERVACGFPSPAA-------DYVE--SRIDLNELLVSHPSAT 51

Query: 138 TRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
              +    SM       GD+L+++S+++   GDR++     G+   K L      S+ L+
Sbjct: 52  YFIRAAGNSMIEGNINDGDMLVVDSSLKPQHGDRVIAAID-GEFTLKKLQLTP--SVKLL 108

Query: 197 SLNCCYPVDTVEMS 210
            +N  Y    ++  
Sbjct: 109 PMNPSYAAIDIDDE 122


>gi|57234348|ref|YP_181599.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195]
 gi|57224796|gb|AAW39853.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195]
          Length = 222

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 13/219 (5%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T  S   I E I    +    TP  L  ++GL      K ++   +      +  +  K+
Sbjct: 8   TMMS---IGEKIREFRKARGWTPEYLGSRSGLSGQYIRKLEKGERQ----SITLTTASKL 60

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
            +A      +L+    +      +         F    +      G  P     N +   
Sbjct: 61  SSAFGIEPSKLISESEATLPRQIEDILTEIRSVFQRLETVEVCVHGCMPERRPRNELKYK 120

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            +  P  G+          +  D  +       G+++++ +   +  G+ L        I
Sbjct: 121 SLLIP-RGLVENLKNIYALQVDDNHLEHFGIYPGEMVVIQAGQAIKDGN-LYACQIGQGI 178

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               L       + +   N       + +++I+ + +IL
Sbjct: 179 YGYHLY-ITDNGLRISDGNGT--NRNLPLTEIKVLGKIL 214


>gi|187960704|gb|ACD43619.1| TumD [Tetrathiobacter kashmirensis]
          Length = 142

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            T       +  SM       GD LI++ ++       ++ +   GD+  K L  +    
Sbjct: 50  PTSTFYLCVKGHSMKEAGIEDGDHLIVDRSLTAKHNSIVIAEID-GDVTVKRLHKK-NGV 107

Query: 193 IDLMSLNCCYPVDT-VEMSDIEWIARIL 219
           I L + N  YP    V   +   I  ++
Sbjct: 108 IRLKAANLTYPDIVPVPGQEW-MIWGVV 134


>gi|194334990|ref|YP_002016850.1| peptidase S24 and S26 domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194312808|gb|ACF47203.1| peptidase S24 and S26 domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 150

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 6/112 (5%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
           FP+  + +          +  +          + + +SM       GD+LI++ +++   
Sbjct: 36  FPSPAEDDE---ELSLDLNKALIKHPAATFYARVKGSSMRDAGIVDGDLLIVDKSLEAKD 92

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD  +     G+   K +   R  ++ LM  N  +    +       +  I+
Sbjct: 93  GDIAVCFLD-GEFTVKRIA-LRQDALFLMPANDEFQPIRITEESDFLVWGIV 142


>gi|332880955|ref|ZP_08448625.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681129|gb|EGJ54056.1| peptidase S24-like protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 148

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 10/99 (10%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               +  +   +      +    SM       GD+++++ +++   GD ++     G+  
Sbjct: 41  GIDLNKELVRHRETTFYARVSGHSMSGAGIEDGDLVVVDKSLEARTGDYVVACID-GEFT 99

Query: 182 AKVLISRRGRSI-DLMSLNCCYPVDTVEMSDIEWIARIL 219
            K            L+  N  +    +   +   +  ++
Sbjct: 100 LKQFRIDAANRCAWLLPANEEFQPIKITGENDFRVWGVV 138


>gi|294787630|ref|ZP_06752874.1| peptidase, S24 (LexA) family [Simonsiella muelleri ATCC 29453]
 gi|294483923|gb|EFG31606.1| peptidase, S24 (LexA) family [Simonsiella muelleri ATCC 29453]
          Length = 100

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
            ++    + +  SM P       ++  +   V   + + +  +  ++  K L      + 
Sbjct: 3   PSRCFCTRVKGDSMHPTIIDRGTVM-WAMQSVYTSEGIYLFRQVNELRIKRLQRVNSHTY 61

Query: 194 DLMSLNCC-YPVDTVEMSDI-----EWIARILW 220
            ++S N   YPV+T+++ ++     E   R LW
Sbjct: 62  RIISDNKAFYPVETLDLREMESHEFEIYGRYLW 94


>gi|283778285|ref|YP_003369040.1| SOS-response transcriptional repressor, LexA [Pirellula staleyi DSM
           6068]
 gi|283436738|gb|ADB15180.1| SOS-response transcriptional repressor, LexA [Pirellula staleyi DSM
           6068]
          Length = 211

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 4/122 (3%)

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
            + I L     +   G   +G    G         E           +      + +  S
Sbjct: 75  ARAIELAPEIVAEDKGLPLAGTVAAGLTNLAFEQNERIDFAEMF--SKKNLFVLQVRGDS 132

Query: 147 M-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           M       GD +++      N G  ++ +   G+   K       + + L   N      
Sbjct: 133 MIEAHISDGDYVVVKKQKSANAGQMVVAQSPEGEATLKYWFP-EAKGVRLQPANSTMQPI 191

Query: 206 TV 207
            +
Sbjct: 192 YL 193


>gi|193214005|ref|YP_001995204.1| XRE family transcriptional regulator [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087482|gb|ACF12757.1| transcriptional regulator, XRE family [Chloroherpeton thalassium
           ATCC 35110]
          Length = 270

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 71/270 (26%), Gaps = 64/270 (23%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--------------------- 44
            + I +    + +   L     ++  G+  +S ++ +                       
Sbjct: 2   EEMIGDRFKAVRKALMLNQDAFSKDIGISQSSLSEIENGKFSPGSDIILSLCRYFNIDSN 61

Query: 45  ---GIEGR---NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEK---------- 88
                 G+    + P +E+I +     +    QL     +    +  + +          
Sbjct: 62  WLLTGTGKMFLEKKPESENISEAGDEPSAADWQLQAEQAAKTAASRSESEALAGDVAALK 121

Query: 89  -----------------EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                            E  ++  P           V  +      + +P +   H    
Sbjct: 122 KQVNELFGLVRGRMDVLEDAMVEIPVFMHRVSAGPAVASSSEIEEYIKLPTVLLKH---- 177

Query: 132 AIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
               +    +    SM+      GD+LI++    +     ++     G+   K L+    
Sbjct: 178 --PKRSYAVRASGNSMVGAGIHSGDLLIVDQEAAIKHKCIVI-ASINGEQTVKRLL-IED 233

Query: 191 RSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
             + L   N  Y    +    +   +  ++
Sbjct: 234 GELVLAPENSHYQSTPITKEMNFSILGVVM 263


>gi|223940256|ref|ZP_03632115.1| SOS-response transcriptional repressor, LexA [bacterium Ellin514]
 gi|223891083|gb|EEF57585.1| SOS-response transcriptional repressor, LexA [bacterium Ellin514]
          Length = 207

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 30/221 (13%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I +  ++  +TPS   +A   G                R      E
Sbjct: 1   MHKITRRQNQILEYILKCQQKDGITPSMRDIAAHFGF------------RSPRTVTDHVE 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K        + +          +  +  ++  +                +       
Sbjct: 49  ALRKK----GALVSEPGLARTLRVVSPLQAFRKRVVDIPVFGSIPAGLAENRYEEARGCV 104

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKP 175
           ++ V  +            +    + +  SM+      GDI+IL   ++   GD ++   
Sbjct: 105 SIDVGTLNIKPTT------RTFALEVRGDSMIGKNICPGDIVILEHGVEAKVGD-VVAAL 157

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              +   K  +  R ++  L + N  Y    +   ++    
Sbjct: 158 IDNESTLKTYVKERSKTY-LRAENPKYSKL-IPADELVIQG 196


>gi|163751558|ref|ZP_02158780.1| transcriptional regulator, putative [Shewanella benthica KT99]
 gi|161328566|gb|EDP99719.1| transcriptional regulator, putative [Shewanella benthica KT99]
          Length = 184

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 59/194 (30%), Gaps = 18/194 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  I  ++  + ++  L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+  
Sbjct: 2   HLDIGASLKVIRKQKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVNSLKKVLSGL 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIR 124
           + ++     +  +     +   +   LL               +P           P   
Sbjct: 57  SLSLVDFFSMEGNTQSEAKVVYRSDDLLDIGDGNLDYKLIGRDYPNRAMSVMSETYPPGS 116

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                +   + ++     +          GD + +     +  GD       +       
Sbjct: 117 DTGAEMLKHEGEEAAMVIEGRL---ELTVGDEVFI-----LEAGDSYYFNSESPH----R 164

Query: 185 LISRRGRSIDLMSL 198
             +       L+S 
Sbjct: 165 FRNPFDEECRLVSA 178


>gi|330448347|ref|ZP_08311995.1| peptidase S24-like family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492538|dbj|GAA06492.1| peptidase S24-like family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 126

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 4/98 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E       +          +    SM+      GD+L+++ A  V  G  ++ +    + 
Sbjct: 24  ESLDLDEYLIRHPNATFFLRASGESMIGAGIYDGDLLVVDRAETVAPGRIVIARI-YDEF 82

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K L+        L + N       +   D E    +
Sbjct: 83  TCKRLVRHE-GVWWLKAENPAMKSFPLP-QDAEIFGVV 118


>gi|330946623|gb|EGH47614.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 193

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 46/196 (23%), Gaps = 16/196 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 2   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGE 61

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K                         +      ++     + G   + +         
Sbjct: 62  GPKHPNECANENTGGDTRLIIHQARNVSRGDVEIQIFMEAESTHGVGKTVLAEAPG--QK 119

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P     + GI               SM    + G IL ++  +       +      
Sbjct: 120 IRLPLQVLQNMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 177

Query: 178 GDIVAKVLISRRGRSI 193
           G +  + L       +
Sbjct: 178 GILRVRYLYRLPNGGL 193


>gi|330881144|gb|EGH15293.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 269

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 46/196 (23%), Gaps = 16/196 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGRN-----------RWPSTES 57
            + +  +    +LT +  A    + P   N   KR     R            RW  T  
Sbjct: 5   GDRLRILLRECHLTATDFAANRKITPQHVNNWFKRGVPMARIDEVAELLTVNARWLRTGD 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K    +                    +      +Y     + G   + +         
Sbjct: 65  GPKHPNESANENTGEDTRMVIQQTRNVLRGDVEIQIYTEVESTHGVGKTVLSEAPG--QK 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       GI               SM    + G IL ++  +       +      
Sbjct: 123 IRLPVQVLQTMGI--DPKNCMCVAMVGNSMADKIQDGSILGVDRELTQVIDGEIYALEHG 180

Query: 178 GDIVAKVLISRRGRSI 193
           G +  + L       +
Sbjct: 181 GILRVRYLYRMPNGGL 196


>gi|118594372|ref|ZP_01551719.1| putative prophage repressor [Methylophilales bacterium HTCC2181]
 gi|118440150|gb|EAV46777.1| putative prophage repressor [Methylophilales bacterium HTCC2181]
          Length = 191

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
            + S   P G      + V   +    ++ + A +        +  SM+      GDI+I
Sbjct: 67  AWFSHKVPAGFPSPADDHVE--KRLDLNDYLIAQKEATFFVSIKGDSMIDASIHDGDIVI 124

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           ++ +     GD +L     G+   K L         L+  N  Y    +    +  I  +
Sbjct: 125 VDRSKDAKIGDIVLASID-GEFTVKTLAKHL-SHPRLLPANSEYKYIDITEGMVFEIWGV 182

Query: 219 L 219
           +
Sbjct: 183 V 183


>gi|333031394|ref|ZP_08459455.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides coprosuis
           DSM 18011]
 gi|332741991|gb|EGJ72473.1| Peptidase S24/S26A/S26B, conserved region [Bacteroides coprosuis
           DSM 18011]
          Length = 147

 Score = 61.3 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                +  +    +     + +  SM+      GDIL+++ +++    D  +     G+ 
Sbjct: 40  ASIDLNKELVKHPSTTFYGRVKGDSMIDANVFDGDILVIDKSLEPQSNDMAVCFID-GEF 98

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             K  I      + L+  N  YP   +       I  I+
Sbjct: 99  TLK-FIEIHDDIVCLIPANPSYPTMKITSDHELIIWGIV 136


>gi|117621500|ref|YP_855615.1| protein UmuD [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562907|gb|ABK39855.1| protein UmuD [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 147

 Score = 61.3 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +      +             + +  SM  +    GD+L+++ ++    GD ++     
Sbjct: 33  YLEGKLDLNTHCVPHPAATFYLRAEGESMTRVGIFPGDLLVVDKSLTPRHGDVVIALLD- 91

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           G    K L  +    + L+  N  +    
Sbjct: 92  GGFTVKTLQLKP--RLRLLPANPAFAPID 118


>gi|110597365|ref|ZP_01385652.1| Peptidase S24, S26A and S26B [Chlorobium ferrooxidans DSM 13031]
 gi|110340909|gb|EAT59380.1| Peptidase S24, S26A and S26B [Chlorobium ferrooxidans DSM 13031]
          Length = 150

 Score = 61.3 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + + +      +  +          + + +SM+     +GDIL+++ ++    GD  +
Sbjct: 40  ADDYMEL--SLDLNKALVRHPAATFYARVKGSSMIDAGILEGDILVIDKSLDPKDGDIAI 97

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K ++      + LM  N  +    +   +   +  ++
Sbjct: 98  CFLD-GEFTVKRIMQHADG-LLLMPANEEFTPIRITEENDFLVWGVV 142


>gi|120596968|ref|YP_961542.1| LexA repressor [Shewanella sp. W3-18-1]
 gi|146294862|ref|YP_001185286.1| LexA repressor [Shewanella putrefaciens CN-32]
 gi|166224648|sp|A4YC04|LEXA_SHEPC RecName: Full=LexA repressor
 gi|166224650|sp|A1RE93|LEXA_SHESW RecName: Full=LexA repressor
 gi|120557061|gb|ABM22988.1| SOS-response transcriptional repressor, LexA [Shewanella sp.
           W3-18-1]
 gi|145566552|gb|ABP77487.1| SOS-response transcriptional repressor, LexA [Shewanella
           putrefaciens CN-32]
 gi|319424559|gb|ADV52633.1| transcriptional repressor, LexA family [Shewanella putrefaciens
           200]
          Length = 206

 Score = 61.3 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 58/215 (26%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I R      + P  + +A + G    +                + E
Sbjct: 1   MRPLTPRQAEILELIKRNIADTGMPPTRAEIATRLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA                    E                 G    G    G    
Sbjct: 45  EHLKALAKKGCIEIMPGTSRGIRLPAEE-----------EVVVEYGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +      T D   + +  SM  +   +GD+L ++   Q   G  + +  
Sbjct: 94  AQEHVEQYYQVDPSMFHPTADFLLRVKGDSMKNIGILEGDLLAVHKVQQARNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    + G  + L + N  Y    V++S
Sbjct: 153 VDDDVTVKRFEKK-GNLVYLYAENEDYSPIKVDLS 186


>gi|326802770|ref|YP_004320588.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651230|gb|AEA01413.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 194

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 33/220 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + ++      +    E   LT   ++ K G   ++  + ++   E      + ES+ K
Sbjct: 1   MPTLAN-----RLKSAREAAGLTIEAVSEKIGKSVSTVWRYEQGKSE-----VNQESLTK 50

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      +   L            +              +       +   G     +  
Sbjct: 51  LAELYGVSELYLRGFSDMKSADVIEVPVYKKYKKGKLKAAKKKHFFELASMGLPNEEI-- 108

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGD 179
                               +  D S+  L  K D  +++   +V  GD   L    +G 
Sbjct: 109 -----------------FAVRINDPSIQSLLSKKDYALVDPLAEVKAGDILCLADKDSGH 151

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +        +   + L  L      +  +  D E + R+ 
Sbjct: 152 LKLAKYQVYQDLPLYL-PLGDK--TEVRDSDDFEVLGRVF 188


>gi|298483272|ref|ZP_07001451.1| transcriptional regulator [Bacteroides sp. D22]
 gi|298270589|gb|EFI12171.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 237

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 21/232 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             ++  +   I R  +  NL   S LA   G+   +           RN       + K+
Sbjct: 1   MDTNLDVLGIIKRAKQALNLKRDSELAEYLGVSRATVTNW-----GARNSIDFRLLLDKL 55

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +     L            + E     +    +            T          
Sbjct: 56  GDKVDYNWLLLGKGNPKHQPRHCESELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANL 115

Query: 122 EIRSPHNGIYAIQTQDT--------RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170
           +    +   YA+                    SM P+ + GDI+    ++S   V  G+ 
Sbjct: 116 KTLFTNKKQYALGKILIPNISVCDGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEI 175

Query: 171 LLIKPRTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            L+         +  K +    +   + L+S N  +    +  + I  +A +
Sbjct: 176 YLVSFMIDGDEYLAVKYVNRSEKEGHLKLVSYNTHHEPMDIPFASINAMAIV 227


>gi|158340177|ref|YP_001521347.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina
           MBIC11017]
 gi|158310418|gb|ABW32033.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina
           MBIC11017]
          Length = 143

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  K +  SM       GD+LI++ ++    G  ++I    G+   K     +G+ 
Sbjct: 50  PAATFFMKVEGYSMTGCGIFSGDLLIVDRSLDPVDG-AVVIAVLDGEFTVKRFRRSKGQ- 107

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + L + N  YP  TV+     ++  ++
Sbjct: 108 VLLAAENSDYPPITVQKGMDFYVWGVV 134


>gi|157960771|ref|YP_001500805.1| XRE family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845771|gb|ABV86270.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC
           700345]
          Length = 182

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E + R+ +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DIGENLKRVRKEKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++     +  S     +   +   LL               FP           P     
Sbjct: 57  SLVDFFSIEDSTLVEQKVVYRSDELLDIGDGMLDFKLIGRDFPNRAMSVMSETYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + Q+     + 
Sbjct: 117 GIEMLKHEGQEAAMVIEG 134


>gi|330988947|gb|EGH87050.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 144

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
             F     FP     + +           + A        +    SM  +    GD++++
Sbjct: 19  YSFKIPAGFPNPAA-DHIEQDFSFDRLMDVRA--PHIYVAQIDGDSMKGVGIFDGDLIVV 75

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + +++   G  ++     G+ V K L  +    I LMS N  Y    +   +   I  ++
Sbjct: 76  DRSLKAGNGSIVIAAVN-GEPVCKRLCIQGENVI-LMSENSGYTPRYILEGEELMIWGVV 133


>gi|330830846|ref|YP_004393798.1| protein UmuD [Aeromonas veronii B565]
 gi|328805982|gb|AEB51181.1| Protein UmuD [Aeromonas veronii B565]
          Length = 147

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +      +             + +  SM  +    GD+L+++ ++    GD ++     
Sbjct: 33  YLEGKLDLNTHCVPHPAATFYLRAEGESMTGVGIFPGDLLVVDKSLTPRHGDVVIALLD- 91

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           G    K L  +    + L+  N  +    
Sbjct: 92  GGFTVKTLQLKP--RLRLLPANPAFAPID 118


>gi|323517031|gb|ADX91412.1| DNA polymerase V component [Acinetobacter baumannii TCDC-AB0715]
          Length = 104

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           +  +   +      +    SML       D LI++ ++     D ++      D   K L
Sbjct: 2   NEHLIKNEEATFIVRVASLSMLNAGIDIDDELIVDRSLDAKHNDIVVALID-NDFTVKRL 60

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +        L + N  Y    +       I  ++
Sbjct: 61  MIDENER-WLKAENPDYDDIHLHDGQELIIWGVV 93


>gi|288799785|ref|ZP_06405244.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333033|gb|EFC71512.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 230

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 54/217 (24%), Gaps = 19/217 (8%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
             +   LT       A L        ++   E +       ++ K     N       + 
Sbjct: 13  FIKYKGLTMKEFESLADLSTGYITSMRKSFGEQK-----LSNVLKAFPELNRDWLLYGEG 67

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
                 +TE         Y           S         + +           +Y  + 
Sbjct: 68  EMLKSTSTEDNNASFVAPYIKDELIYLPLFSVPALASFA-DNLSQASATLETYPVYVAKG 126

Query: 136 QDT------RHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAKVL 185
           +          + +  SM P  +   +++              ++++          K +
Sbjct: 127 EAYTKERHIVIEAKGESMSPTIQNKAMILCEKIEPEQWDYIQNEKIIAIIYDNSFTIKRV 186

Query: 186 ISR---RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +        +I L + N  Y    V   DI+ I R +
Sbjct: 187 LRNNLATANTITLSADNTKYGTLEVSRCDIKGIYRAI 223


>gi|237747874|ref|ZP_04578354.1| impA [Oxalobacter formigenes OXCC13]
 gi|229379236|gb|EEO29327.1| impA [Oxalobacter formigenes OXCC13]
          Length = 140

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
           +          + +  SM  +   +GD ++++ +I       +L      + + + L  R
Sbjct: 44  LLVNPCSSFLFRMKGDSMEGIGIYEGDTIVVDRSIDPQHNHIVLGVADQ-EYLVRRLYKR 102

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
            GR++ LM  N  Y    +       I  ++ AS
Sbjct: 103 -GRTVRLMPENEKYRPLELTEGRELQIWGVVTAS 135


>gi|240142321|ref|YP_002966831.1| component of DNA polymerase V, subunit D [Methylobacterium
           extorquens AM1]
 gi|240012265|gb|ACS43490.1| component of DNA polymerase V, subunit D [Methylobacterium
           extorquens AM1]
          Length = 144

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 9/133 (6%)

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEI------RSPHNGIYAIQTQDTRHKTQDTSM 147
               S   G         G        P              +   +      +    SM
Sbjct: 1   MLQISRPWGAPVPLPLLAGAVRAGFPSPAEDFIEQEIDLQRLLVPNRPSTFLVRVSGDSM 60

Query: 148 -LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
            L     GDI +++ ++  + GD +++    G+   K+   R    + L   N  +P   
Sbjct: 61  VLARLFDGDIAVVDRSLTPSDGDIVVVDID-GERSFKIWSRR-AGRVQLSFANPRFPEFE 118

Query: 207 VEMSDIEWIARIL 219
           ++   +  I  I+
Sbjct: 119 IQADAVVEIWGIV 131


>gi|323142841|ref|ZP_08077553.1| peptidase S24-like protein [Succinatimonas hippei YIT 12066]
 gi|322417383|gb|EFY08005.1| peptidase S24-like protein [Succinatimonas hippei YIT 12066]
          Length = 144

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +      ++ +               SM+      GD++++++  +    D ++      
Sbjct: 39  IDRRLDVNSYLLDHPKATIAFTVSGESMIDAGILPGDLVLVDTMKEACDKDVVVASVD-N 97

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
           +   K L       + L+  N  Y     E   +++ +  ++
Sbjct: 98  EYTIKELRIGPP--LQLLPKNKEYSPIKFEDGMEVKILGPVV 137


>gi|218886771|ref|YP_002436092.1| phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757725|gb|ACL08624.1| putative phage repressor [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 244

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 30/230 (13%)

Query: 17  AERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET---ICQ 71
                +   PS LA +A ++  S ++  R       +  S ES+ K+L A         +
Sbjct: 13  RASQGMFRNPSHLAAEAHVEQASVSRYLRNE-----KGLSLESVGKLLDAIGARLVFPDE 67

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPHN 128
            L          +       L                   G        +    +   H 
Sbjct: 68  QLPSREVCWVDAKVVAAGNGLPSPEHEDYYAVPLVDEAGAGPGIIPQGQLISWFLVWRHQ 127

Query: 129 GIYAIQTQDTRHKTQ--DTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKV 184
                +      +      SM P    GDI++++   +     G  +L+    G    K 
Sbjct: 128 ETIRHRADLIAVRIAKGSDSMAPTLAPGDIVLVDRQDKNADRPGRIMLVMDPDGAGKVKR 187

Query: 185 LI-----SRRGRSIDLMSLN-CCYPVDTVEMSD-------IEWIARILWA 221
           +        +   +   S N   YP +   +            + R++WA
Sbjct: 188 VHAQHLPEEKDYRLTYYSDNAAAYPPEVYSLKRDFDSDWHRAIVGRVIWA 237


>gi|302877876|ref|YP_003846440.1| LexA repressor [Gallionella capsiferriformans ES-2]
 gi|302580665|gb|ADL54676.1| LexA repressor [Gallionella capsiferriformans ES-2]
          Length = 197

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 46/183 (25%), Gaps = 14/183 (7%)

Query: 41  SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                 +    W S  S  ++           +    +     +  E+     + P    
Sbjct: 11  YLNKLQDYYADWKSIPSYARLCEIFGIASKSWVKTILTRLGEADFIERTPDGAWIPT--- 67

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPL-YRK 153
              F +           + V    +  +            ++ T    +  SM+      
Sbjct: 68  -RQFFARPLAESTVQAGMPVSVTATQGDFFVIDEMLIDTPSKTTLITVKGDSMIDAGIHD 126

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           GD+ ++   +  N GD ++      D   K L      +  L   N  +         +E
Sbjct: 127 GDVAVVEKRMTANIGDIVVAIVD-DDFTLKTLDR-ENGAFILRPANPAF-PIIRPQGTLE 183

Query: 214 WIA 216
              
Sbjct: 184 IFG 186


>gi|307128309|ref|YP_003880340.1| cI repressor [Streptococcus pneumoniae 670-6B]
 gi|306485371|gb|ADM92240.1| cI repressor [Streptococcus pneumoniae 670-6B]
 gi|321157300|emb|CBW39283.1| Putative phage repressor protein [Streptococcus phage 2167]
          Length = 255

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 60/256 (23%), Gaps = 44/256 (17%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR----------- 49
           M   + +     +    E+  +  + L     L  T+     +     R           
Sbjct: 1   MKVENKEIFANNLSFYMEQKGVDRNTLCADLDLKYTTVRDWLKGITYPRIGKIELLANYF 60

Query: 50  -------------NRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
                           PS   + +I     +       +         + ++        
Sbjct: 61  NINKSDLIENKIFTAQPSDSLLEEITNTARKLNTDNKKIVLRTSEELLESQENEEETKIN 120

Query: 97  PSGSGGFFDSGV-----------FPTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
                                     G+       +    S +                 
Sbjct: 121 EVSENIIRLDDYRQTTYRRVTGVVSAGSGSIQDDDLDMEVSFYEDEIPDDYDAIA-YVVG 179

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P  + GD L + +  QV+     + +   G    K L  +      L SLN  Y  
Sbjct: 180 NSMEPKIKNGDYLFIKNTQQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDYED 233

Query: 205 DTVEMS-DIEWIARIL 219
             ++ S DI  I  ++
Sbjct: 234 IHLDESNDIRTIGEVV 249


>gi|309798706|ref|ZP_07692971.1| phage transcriptional repressor [Streptococcus infantis SK1302]
 gi|308117649|gb|EFO55060.1| phage transcriptional repressor [Streptococcus infantis SK1302]
          Length = 148

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
             D        SM P Y+ G + ++        G  +           K +       + 
Sbjct: 57  AHDFASWVSGDSMEPKYQNGSVALIRETGFDYDG-AVYAVVCNNQTYIKRVYR-EAEGLR 114

Query: 195 LMSLNCCYPVDTVE-MSDIEWIARIL 219
           L+S+N  Y    +    D   +  I+
Sbjct: 115 LVSINPKYKDIFISYEEDPRIVGIIV 140


>gi|4063729|gb|AAC98440.1| UmuD MucA homolog [Streptococcus pneumoniae]
          Length = 224

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 46/181 (25%), Gaps = 15/181 (8%)

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            P+  ++ K+    N                 +  E+         +      ++ V   
Sbjct: 38  NPNQNNLSKLSEILNVDPRYFESEYEIVQTYLKLTERNQEATLHYATELLNKQNAKVVEI 97

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQ------------DTRHKTQDTSMLPLYRKGDILIL 159
             ++      ++ +     Y                 D        SM P Y  G + ++
Sbjct: 98  PERFAYKVYEKLSAGTGTAYFDDGNYDTVYFNHQFDYDFASWVFGNSMEPTYEDGSVALI 157

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI-EWIARI 218
                   G  +      G    K +       + L+SLN  Y        +    I +I
Sbjct: 158 KQTGFDYDG-AIYAIDWDGQTYIKKVYREENG-LRLVSLNRNYSDKFAPYDENPRIIGKI 215

Query: 219 L 219
           +
Sbjct: 216 V 216


>gi|222149508|ref|YP_002550465.1| bacteriophage repressor protein C1 [Agrobacterium vitis S4]
 gi|221736490|gb|ACM37453.1| bacteriophage repressor protein C1 [Agrobacterium vitis S4]
          Length = 191

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 67/225 (29%), Gaps = 41/225 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIF 59
           MT      I   I ++          LA   G+  ++ N+ K     EG +R    E   
Sbjct: 1   MTM----DIATYIAQLLSMKKWNQVKLAAHFGVSQSTVNRWKSGSEPEGHHRDAIRE--- 53

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                               G    K  K + L+    +G   +            + V 
Sbjct: 54  --------------LYNTEFGTPDSKPFKRVKLMGKVGAGQEIYAIDD-----GGQSDVD 94

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIKPRT 177
            P                   +    SM P Y +G IL  +  +  +     R +++   
Sbjct: 95  APADAHQ---------NTVAVEVSGESMYPAYEEGTILFYSKTLPPSEMVNRRAVVQLAD 145

Query: 178 GDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           G I  K +       +  L S+N  YP    ++  +EW A I W 
Sbjct: 146 GRIFVKTVRPGTTPNTWTLTSINALYPDMIDQI--VEWAAPIDWI 188


>gi|162134177|gb|ABX82519.1| UmuC [Acinetobacter radioresistens]
 gi|162134180|gb|ABX82521.1| UmuD [Acinetobacter genomosp. 14TU]
          Length = 179

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V +    +  +   +      K    SML       D LI++ +I    GD ++      
Sbjct: 69  VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 127

Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   K L          + L + N  +    ++      I  ++
Sbjct: 128 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVIWGVV 171


>gi|262375862|ref|ZP_06069094.1| LexA repressor [Acinetobacter lwoffii SH145]
 gi|262309465|gb|EEY90596.1| LexA repressor [Acinetobacter lwoffii SH145]
          Length = 168

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +   +      K    SM        D LI++ +++    D ++      +   
Sbjct: 63  LDMNEHLIKNEAATFIVKVASLSMRDAGIDIDDELIVDRSMEAKHEDIVIALID-NEFTV 121

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L+        L + N  Y    ++      I  ++
Sbjct: 122 KRLMIEGDER-WLKAENPDYSDIHLKDGQEMVIWGVV 157


>gi|296137339|ref|YP_003644581.1| Peptidase S24/S26A/S26B, conserved region [Thiomonas intermedia
           K12]
 gi|295797461|gb|ADG32251.1| Peptidase S24/S26A/S26B, conserved region [Thiomonas intermedia
           K12]
          Length = 165

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 109 FPTGNKWNTVGVP--------EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
            P G     +G P        +    +  +         ++    SM+      GD+LI+
Sbjct: 30  LPMGAARVAMGFPSPAEDFEDDSVDLNQLLVRNPPATFLYRATGWSMIQAGICDGDVLIM 89

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218
           + +++   GD ++        V KVL       I+L S N       +    ++E  A +
Sbjct: 90  DRSVRPQDGDVVIAVWDGNAPVCKVLH-VFDDRIELHSRNPRIAPIVLSPDTEVEIFAVV 148

Query: 219 LWASQ 223
             A Q
Sbjct: 149 GVARQ 153


>gi|296270862|ref|YP_003653494.1| putative phage repressor [Thermobispora bispora DSM 43833]
 gi|296093649|gb|ADG89601.1| putative phage repressor [Thermobispora bispora DSM 43833]
          Length = 107

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
               +    SMLP  R GD L++     +  GD ++ + R   ++ K           L 
Sbjct: 2   LIAVRVAGESMLPALRPGDCLLVRRGAPIRPGDLVVAR-RPHGLIVKRAFRLMPEGWWLE 60

Query: 197 SLNCCYPVDTVEMS-----DIEWIARIL 219
           S N   P            + E + R++
Sbjct: 61  SDNQSAPGRQDSWDFGAVPEREIVGRVI 88


>gi|218246999|ref|YP_002372370.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC
           8801]
 gi|257060074|ref|YP_003137962.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC
           8802]
 gi|218167477|gb|ACK66214.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC
           8801]
 gi|256590240|gb|ACV01127.1| SOS-response transcriptional repressor, LexA [Cyanothece sp. PCC
           8802]
          Length = 200

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 5/87 (5%)

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRR 189
           Q      +    SM      +GD+ I+ +     +   GD +           K    + 
Sbjct: 106 QKNCYALRVTGDSMIEDYIAEGDVAIMRTLSGDERPKEGDIVAAIVAGLGTTLKRFY-QE 164

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           G  + L + N  Y    V    +    
Sbjct: 165 GEMVILQASNARYQPIRVSADQVTIQG 191


>gi|213052515|ref|ZP_03345393.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213418856|ref|ZP_03351922.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213426679|ref|ZP_03359429.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586424|ref|ZP_03368250.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213620597|ref|ZP_03373380.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213647572|ref|ZP_03377625.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213855468|ref|ZP_03383708.1| SamA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 117

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
           P+   P + +   F            T    E    +       +     +    SM  +
Sbjct: 6   PIASIPEALTIPLFTERCAAGFPSPATDYTEEELDLNAYCIRRPSSTFFVRAIGDSMRDM 65

Query: 151 -YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYP 203
               GD+++++ A +   GD ++     G+   K L  +    I L+ +N  Y 
Sbjct: 66  GLHSGDLMVVDKAEKPLQGDIVI-AETEGEFTVKRLQLKP--RIALLPMNPAYH 116


>gi|84394325|ref|ZP_00993048.1| LexA repressor [Vibrio splendidus 12B01]
 gi|84375055|gb|EAP91979.1| LexA repressor [Vibrio splendidus 12B01]
          Length = 206

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIEDFGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KEAIEIIPGASRGIRILLEDAANEEQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E+    +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVEMHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G ++ L + N  +    V++ 
Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIHVDLE 186


>gi|189463056|ref|ZP_03011841.1| hypothetical protein BACCOP_03758 [Bacteroides coprocola DSM 17136]
 gi|198276546|ref|ZP_03209077.1| hypothetical protein BACPLE_02741 [Bacteroides plebeius DSM 17135]
 gi|255691241|ref|ZP_05414916.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|189430338|gb|EDU99322.1| hypothetical protein BACCOP_03758 [Bacteroides coprocola DSM 17136]
 gi|198270634|gb|EDY94904.1| hypothetical protein BACPLE_02741 [Bacteroides plebeius DSM 17135]
 gi|260623156|gb|EEX46027.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 227

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 59/222 (26%), Gaps = 12/222 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +A    +T   + R  G      +++   G + + +W S         +T  
Sbjct: 3   NILSRIQEIASNEGITIGAMERTIGASKGVLSRAINNGTDIQAKWLSIIVENYPRYSTGW 62

Query: 68  TICQLLDL-PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +     +            E     +                     ++ V   ++  P
Sbjct: 63  LLTGAGSMLKDDLNGIKTIDEANPSFMPTTSMNPSVGTPYYDVDFIGGFDEVFNSQVNIP 122

Query: 127 HNGIYAI--QTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGDIVA 182
              I     +           SM P    GDI+ L       +  G+   +   T     
Sbjct: 123 ATNIVIRGFEKASLWCNVTGHSMEPKINHGDIIALRQCTLNDIQYGEIYAVVLDTI-RTI 181

Query: 183 KVLISRRG-RSIDLMSLN-CCYPVDTVEMSDI----EWIARI 218
           K+L        +  + +N   Y     + S I    E I  I
Sbjct: 182 KILRRSPDPSKLRFIPINTEDYDEQEFDKSRIMNVFEVIGSI 223


>gi|256371471|ref|YP_003109295.1| SOS-response transcriptional repressor, LexA [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008055|gb|ACU53622.1| SOS-response transcriptional repressor, LexA [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 207

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 43/222 (19%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSF-NKSKRFGIEGRN-RWPSTESIFK 60
            + I   + ++ E     PS   +A   GL  P S  +  +R   +GR  R P       
Sbjct: 9   REAILAYVTQVVEERGWAPSVREIADAVGLKSPASVQHHLRRLERDGRLVRSPLKARSLS 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +                            +P+L    +G          P      +V V
Sbjct: 69  VARR--------------------APSAAVPVLAEVGAGYHV------VPEVEVETSVAV 102

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P   +               + +  SM+ +    GD++++  +     GD ++       
Sbjct: 103 PASMAAPG--------AFALRVRGHSMVDVGILDGDLVVVAPSDVAADGDIVVASVGDDV 154

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWI-ARIL 219
              K+L  R G S+ L   N   P    +  ++   +  R++
Sbjct: 155 GTVKIL-RRNGSSVWLEGANEDDPSLAPMPWNETCHLHGRVV 195


>gi|253998706|ref|YP_003050769.1| putative phage repressor [Methylovorus sp. SIP3-4]
 gi|253985385|gb|ACT50242.1| putative phage repressor [Methylovorus sp. SIP3-4]
          Length = 232

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                   M PL   GD + ++       GD L    + G I  K +  R   S+ +   
Sbjct: 139 LVHVYGDGMEPLLSDGDEVFIDIRCNAFDGDALYAIRQHGRITIKRVQVRLDGSVAIKYD 198

Query: 199 NC-CYPVDTVEMS---DIEWIARIL 219
           N   +P++        D+E + +++
Sbjct: 199 NDGGFPIEVYSAENAKDVEVVGKVM 223


>gi|253569290|ref|ZP_04846700.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251841309|gb|EES69390.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 241

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 51/209 (24%), Gaps = 21/209 (10%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA   G+   + +                  +   L   +                + 
Sbjct: 29  SELASYLGVARATLSNWCARNSIDFP------LLLNKLHHVDYNWLLTGKGSPLHDPKSF 82

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI--------QTQ 136
              K    +    +            T                   YA+           
Sbjct: 83  DNGKIRGEVETIHNSKTTEAIDDRSVTLYDITAAANLRTLLSDKRQYALGKILIPSIPAC 142

Query: 137 DTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRRG 190
           D        SM P+ + GDI+    +N+   V  G+  ++         +  K +     
Sbjct: 143 DGAIFVNGDSMYPILKSGDIVGFKGINNFSNVIYGEMYIVAFHLDGDQYLTVKYVNRSEK 202

Query: 191 RSID-LMSLNCCYPVDTVEMSDIEWIARI 218
                L+S N  +    + +  I+ +A +
Sbjct: 203 EGYVKLVSYNPHHEPMDLPVDTIQDMAIV 231


>gi|171779679|ref|ZP_02920635.1| hypothetical protein STRINF_01516 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281781|gb|EDT47215.1| hypothetical protein STRINF_01516 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 260

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 62/259 (23%), Gaps = 49/259 (18%)

Query: 2   TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
            S  +K+I+   +     +  +  + L     L  T+     +       R    E +  
Sbjct: 4   KSVKNKEIFSKNLAYYMNKKGIDRNTLCSDLDLKYTTVRDWLKGIT--YPRIGKIELLAN 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL--------------------------- 93
                   + +                ++  LL                           
Sbjct: 62  YFNVNKSDLIEDKSEKSDISSKINFDPRQAILLSNYNKLNDNRKDKLVQVSEKLLAEEDG 121

Query: 94  ----------YFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPHNGIYAIQTQDTRH-K 141
                      +           G    G   W       +   +      +++      
Sbjct: 122 RALDICEKRAEYETRKRVSLPVPGKVSAGTGYWQEDDYDTMVDFYEDEIPDESEYDTIAI 181

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
               SM P  + GD L +    QV+     + K   G+   K L S       L SLN  
Sbjct: 182 VVGHSMEPKIKNGDFLFIKLKNQVDLNKIGIFKVD-GENYVKKLKSD-----RLESLNKE 235

Query: 202 YPVDTVEMS-DIEWIARIL 219
           Y    +    D+  I  ++
Sbjct: 236 YDDIQLSEENDVRTIGEVV 254


>gi|72382115|ref|YP_291470.1| SOS mutagenesis protein UmuD [Prochlorococcus marinus str. NATL2A]
 gi|124025651|ref|YP_001014767.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           NATL1A]
 gi|72001965|gb|AAZ57767.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Prochlorococcus marinus str. NATL2A]
 gi|123960719|gb|ABM75502.1| putative SOS mutagenesis protein UmuD [Prochlorococcus marinus str.
           NATL1A]
          Length = 144

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + + +      +  +          +    SM        D+LI++ +I  N G  ++
Sbjct: 30  AEDYIEL--GIDLNKYLIKNPISTFFLRVSGNSMNNAGIYNNDLLIIDRSINPNPGHIVV 87

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
                G+   K LI ++  S  L +    YP   +
Sbjct: 88  ALLD-GEFTLKRLIKKQD-SYYLKADKENYPAINL 120


>gi|194336454|ref|YP_002018248.1| peptidase S24 and S26 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308931|gb|ACF43631.1| peptidase S24 and S26 domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 150

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 4/116 (3%)

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAI-QTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
                 G         E+    N             + +  SM+    R GD+LI++ +I
Sbjct: 29  DTGISAGFPSPAEDFGELVLDLNKALIKHPAATFYARAKGVSMMDAGIRDGDLLIIDKSI 88

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               G   +     G+   K +  +    + LM  N  +    +   +   I  I+
Sbjct: 89  DPKEGSIAVCFLN-GEFTVKRISLQDDG-LYLMPANSEFKPIRISEENEFQIWGIV 142


>gi|156972616|ref|YP_001443523.1| LexA repressor [Vibrio harveyi ATCC BAA-1116]
 gi|269961501|ref|ZP_06175864.1| LexA repressor [Vibrio harveyi 1DA3]
 gi|166224655|sp|A7N0W6|LEXA_VIBHB RecName: Full=LexA repressor
 gi|156524210|gb|ABU69296.1| hypothetical protein VIBHAR_00268 [Vibrio harveyi ATCC BAA-1116]
 gi|269833730|gb|EEZ87826.1| LexA repressor [Vibrio harveyi 1DA3]
          Length = 206

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIEDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KQAIEIIPGASRGIRILLEDAANDDQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVESHYQVDPAMFKPKADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G ++ L + N  +    V++
Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIQVDL 185


>gi|66395604|ref|YP_239964.1| ORF016 [Staphylococcus phage 3A]
 gi|156603954|ref|YP_001429900.1| repressor [Staphylococcus phage tp310-2]
 gi|258455601|ref|ZP_05703558.1| repressor [Staphylococcus aureus A5937]
 gi|295407667|ref|ZP_06817456.1| CI-like repressor [Staphylococcus aureus A8819]
 gi|297246768|ref|ZP_06930583.1| CI-like repressor [Staphylococcus aureus A8796]
 gi|62635950|gb|AAX91061.1| ORF016 [Staphylococcus phage 3A]
 gi|154818040|gb|ABS87467.1| repressor [Staphylococcus phage tp310-2]
 gi|257862289|gb|EEV85060.1| repressor [Staphylococcus aureus A5937]
 gi|294967481|gb|EFG43521.1| CI-like repressor [Staphylococcus aureus A8819]
 gi|297176394|gb|EFH35667.1| CI-like repressor [Staphylococcus aureus A8796]
          Length = 228

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 58/229 (25%), Gaps = 33/229 (14%)

Query: 22  LTPSGLA--------RKAGLDPTSFNKSKRFGIEGRNRWPST---------ESIFKILAA 64
           +T   LA            L     +K +    E R                 ++     
Sbjct: 1   MTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYFNVKINDLYSESNT 60

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF----------DSGVFPTGNK 114
           T +    +  +        ++                                   TG  
Sbjct: 61  TYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNKVTSIDGYKESKLVSYIACGATGAG 120

Query: 115 WNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
                  +I          +T    D        SM P+ ++G    +     +  G   
Sbjct: 121 IGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDSIKDGTIA 180

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           L+    G  + K +       I+L+SLN  Y    V   S+I+ + +++
Sbjct: 181 LVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 227


>gi|260557538|ref|ZP_05829753.1| DNA polymerase V component [Acinetobacter baumannii ATCC 19606]
 gi|260409164|gb|EEX02467.1| DNA polymerase V component [Acinetobacter baumannii ATCC 19606]
          Length = 164

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 3/85 (3%)

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                K    SML       D LI++ ++    GD ++      +   K L+        
Sbjct: 73  STFIVKVASLSMLNAGIDIDDELIVDRSLDAKHGDIVIALID-NEFTVKRLMIDEKGQ-W 130

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L + N  Y    +       I  ++
Sbjct: 131 LKAENPEYKNIYLADGQELIIWGVV 155


>gi|291614655|ref|YP_003524812.1| phage repressor [Sideroxydans lithotrophicus ES-1]
 gi|291584767|gb|ADE12425.1| putative phage repressor [Sideroxydans lithotrophicus ES-1]
          Length = 130

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
            +         SM P + +G+IL++     V+ G  ++ +    + + + L         
Sbjct: 28  KEIVALMVLGDSMAPEFTEGEILVIEMGAPVSDGSFVVGEAN-EEFIFRQLRRGDHGGWQ 86

Query: 195 LMSLNCCYPVDTV 207
           L +LN  YP   +
Sbjct: 87  LHALNPAYPDIAI 99


>gi|182415864|ref|YP_001820930.1| LexA family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177843078|gb|ACB77330.1| transcriptional repressor, LexA family [Opitutus terrae PB90-1]
          Length = 200

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 50/216 (23%), Gaps = 27/216 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   + I + I  +  +  + PS                         R    ES   
Sbjct: 1   MLTEKQEAILDYIRSVQAQRGVPPS--------------------TREIQRHFGYESQNA 40

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +        +       DG T   K  E+   +  P                   T+  
Sbjct: 41  AMNHLRALARKGQLHQ-VDGATWGLKVSEVQGHFELPIYGTIPAGVPSMQEQQPKETITF 99

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                          +    +    SM+  +     + +    +   GD +         
Sbjct: 100 DPAVFRLRR----PERLWGLEVHGDSMIDAHILDGDIAVLERREAKPGDIVAALVDETTT 155

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
             K L   +G+ + L   N  Y    V    +E   
Sbjct: 156 TLKRLAYVKGKPV-LKPENARYA-LIVPKDRLEIQG 189


>gi|262279800|ref|ZP_06057585.1| DNA polymerase V component [Acinetobacter calcoaceticus RUH2202]
 gi|262260151|gb|EEY78884.1| DNA polymerase V component [Acinetobacter calcoaceticus RUH2202]
          Length = 166

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 4/129 (3%)

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSPHNGIYAIQTQDTRHKTQDTSM-LPL 150
           L  P S     +       G         +     +  +   +T     K    SM    
Sbjct: 29  LIIPTSHMLIPYALEKISAGFPSPAQDYIDKALDMNEHLIKNETATFIVKVASLSMFNAG 88

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
               D LI++ ++    GD ++      D   K L+        L + N  Y    +   
Sbjct: 89  IDIDDELIVDRSLDAKHGDIVVALID-DDFTVKRLMIDETGQ-WLKAENPDYKNIYLADG 146

Query: 211 DIEWIARIL 219
               I  ++
Sbjct: 147 QELIIWGVV 155


>gi|167622932|ref|YP_001673226.1| XRE family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352954|gb|ABZ75567.1| transcriptional regulator, XRE family [Shewanella halifaxensis
           HAW-EB4]
          Length = 182

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E + ++ +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DIGENLKKVRKEKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++ +   +  +     +   +   LL               FP           P     
Sbjct: 57  SLVEFFSIEDTQETEQKVVYRSDELLDIGDGMLDFKLIGRDFPNRAMSVMSETYPSGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + Q+     + 
Sbjct: 117 GIEMLKHEGQEAAMVIEG 134


>gi|221194515|ref|ZP_03567572.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626]
 gi|221185419|gb|EEE17809.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 70/227 (30%), Gaps = 31/227 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E ++ +    N+T   +AR +G+   +    ++  +      P  ES+ K+  A   +  
Sbjct: 5   ENLEALLVLKNVTQDEIARLSGVTAGAVTGWRKGSL------PRKESLKKLCNAFGISED 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L+   +   +  +        +  P       FD+      +    + +P   + +   
Sbjct: 59  DLISDTYGLAQKYKSTLSSDEQIKIP--LIKVLFDTHGNVKEDSCILISIPAYIAQNR-- 114

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRL-LIKPRTGDI-------- 180
                       +D        +G  ++++    Q   G  + +      ++        
Sbjct: 115 ----KNLFAFIVEDDGYNLKIPQGVAVVVDPNEKQPKNGSIVAVEVLNYQELSTLWNQKS 170

Query: 181 -VAKVLISRRGRSIDLM--SLNCC----YPVDTVEMSDIEWIARILW 220
            V     +   + + L   S N          +   S IE +  I+W
Sbjct: 171 YVILRTWNEGAKHLMLSPYSHNKNLDDIIIGISDIDSTIEVLGTIIW 217


>gi|150024495|ref|YP_001295321.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
           complex with UmuC [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771036|emb|CAL42503.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
           complex with UmuC [Flavobacterium psychrophilum
           JIP02/86]
          Length = 148

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           V +  S      +        K +  SM P  + GDILI+ S + +      ++     D
Sbjct: 45  VEQKLSLDEKYISNPNNTYLIKVRGNSMYPTLQIGDILIVKSDLDLKDNKIAIVSINNSD 104

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
              K    R+      ++ N  YP   +E  D
Sbjct: 105 YTVKRYSKRKK---TFVADNSEYPNIDIEEED 133


>gi|311107821|ref|YP_003980674.1| peptidase S24-like family protein [Achromobacter xylosoxidans A8]
 gi|310762510|gb|ADP17959.1| peptidase S24-like family protein [Achromobacter xylosoxidans A8]
          Length = 367

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%)

Query: 106 SGVFPTGNKWNTVGVP------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
                 G+                +S    + A   +      +  SM P+ R G  L++
Sbjct: 225 DVRLAAGDPIENHAEEQTGMIQFRKSFLRSVGADNGKGRVVYAKGDSMEPVIRDGAALLV 284

Query: 160 NSAIQVNCGDR----LLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEM-SDIE 213
                +   D     +      G ++ K +   R        S N  +    +E  + + 
Sbjct: 285 VPNESLTLQDIAAGGVYAINYDGKMIVKTVARERLTGQWVARSFNSLHDDIPLENGASVR 344

Query: 214 WIARILWA 221
            + R++WA
Sbjct: 345 VLGRVVWA 352


>gi|330982709|gb|EGH80812.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 150

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 10/145 (6%)

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPHNGI--YAIQTQDT 138
              +           PS    +        G     V   P   S    I  Y  + +  
Sbjct: 1   PASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISDYKAKGRAF 60

Query: 139 RHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193
               +  SM         +G ++++++ I+   G  ++   P + +   K L+       
Sbjct: 61  WLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED-AGRY 119

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARI 218
            L  LN  YP   V   + + I  I
Sbjct: 120 FLKPLNPAYPTLAVT-EECKLIGVI 143


>gi|284008236|emb|CBA74538.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 209

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 21/218 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   I E I     +  L    + +       + ++    G +     PS + +  
Sbjct: 1   MKKTT---INERIILRMRQLKLKHKDIVKATKASKGAVSQWVNGGNK-----PSADYVAA 52

Query: 61  ILAATNETICQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +      +   L       +      K K+IPLL    + +                 + 
Sbjct: 53  LAHVLKVSEKWLLEGELNDEVIPYHNKMKKIPLLSLEQAVTWSDSIMNNDH------WIE 106

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                +       I+          T       +G  LI++   +V+ G  +     + D
Sbjct: 107 TSSNTNNSCFAVQIKGDSM---VSTTGSGISLPEGAFLIIDPKYKVSSGLIVAAHLPSSD 163

Query: 180 IVA-KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            +  K LI      I L+S+N  Y    ++  D   I 
Sbjct: 164 AIIIKKLIIDGPN-IYLVSINPNYKPIQIDTLD-YIIG 199


>gi|330447172|ref|ZP_08310822.1| lexA repressor [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491363|dbj|GAA05319.1| lexA repressor [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 206

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTLRQQQVFDLIKAKIDETGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                              L+        G    G    G    
Sbjct: 46  HLKALAR------------KEVLEIIPGASRGIRLLVTEEEPEEQGLPLIGRVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     + +      D   +    SM  +    GD+L ++    V+ G  + +  
Sbjct: 94  AQEHVEAHYEVDPMLFKPRADFLLRVNGMSMKNIGIMDGDLLAVHKTQDVHNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G  + L + N  +    V++ 
Sbjct: 153 VDDDVTVKRLDKK-GSKVLLHAENEEFSPIEVDLE 186


>gi|54302652|ref|YP_132645.1| hypothetical protein PBPRB0973 [Photobacterium profundum SS9]
 gi|46916076|emb|CAG22845.1| hypothetical protein PBPRB0973 [Photobacterium profundum SS9]
          Length = 147

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E       +          +    SM+ +    GD+L+++ A Q   G  ++++    + 
Sbjct: 43  EQLELDEYLIRNPNATFLLRASGESMIGVGIYDGDLLVVDRAEQAVAGRIVIVRI-YDEF 101

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K LI     +  L + N  +    +   D E    +
Sbjct: 102 TCKRLIRY-NDAWWLKAENPTFKAFPIP-EDAEIFGVV 137


>gi|312233589|gb|ADQ53882.1| DNA-binding protein RDGA [Vibrio harveyi]
          Length = 132

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
            +TV VP   + H  I     Q    +    SM P+   G +++++ +       ++ + 
Sbjct: 35  ISTVPVPSYVTKHRNI----NQIVSIQVMGDSMEPMLYDGGLVVIDKSEVSIRDGKVYVF 90

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
            + G +  K L+   G  + + S N  Y  +T++
Sbjct: 91  RQDGMLRVKRLVLISGG-VLIKSQNPAYNSETLQ 123


>gi|90412714|ref|ZP_01220715.1| LexA repressor [Photobacterium profundum 3TCK]
 gi|90326289|gb|EAS42708.1| LexA repressor [Photobacterium profundum 3TCK]
          Length = 205

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 64/214 (29%), Gaps = 35/214 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQEVFDLIKAKIEDSGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                          + I +L    +   G    G    G    
Sbjct: 46  HLKALARK-------------EVIEIVPGASRGIRVLLHDEAEEKGLPLIGRVAAGEPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E+    +        D   +    SM  +    GD+L ++    V+ G  + +  
Sbjct: 93  AQEHVEMHYEVDPTLFKPRADFLLRVNGMSMKDIGIMDGDLLAVHKTQDVHNGQVV-VAR 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G  + L + N  +    V++
Sbjct: 152 VDDDVTVKRLDKQ-GSQVLLHAENEDFAPIVVDL 184


>gi|148555124|ref|YP_001262706.1| putative phage repressor [Sphingomonas wittichii RW1]
 gi|148500314|gb|ABQ68568.1| putative phage repressor [Sphingomonas wittichii RW1]
          Length = 250

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 64/253 (25%), Gaps = 39/253 (15%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M      +  I   ID++      T   ++   G         +R G  G       + I
Sbjct: 1   MAKKPEDRMAILARIDQLIAERGTTEFAVSTAVGRK-DLIRDLRRKGTIGP------DGI 53

Query: 59  FKILAATNETICQLLDLPFS-----DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
             +      ++  L                 K+       ++                  
Sbjct: 54  RLLADYFGVSVDWLRYEEGPVSVPTTPGPPHKEAYPDFQRHYERPQDEPPTVPVWGSGLG 113

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD----------------TRHKTQDTSMLPLYRKGDIL 157
               V    +      +     +                      +  SM P Y  G+  
Sbjct: 114 ATVEVDADGVLVSVETLLIFPNEAVDQLRRPFRLIGRPGIYAFYFEGDSMEPKYSPGEPA 173

Query: 158 ILNSAIQVNCGDRLLIKPRTGD--------IVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
            ++        D +L++ R  +        ++AK L+ R    ++L   N       V  
Sbjct: 174 FVDGNKPPVVMDYVLVQLRRPEGDDETIHTVLAKRLVKRTAAYVELEQFNPPMR-FKVPR 232

Query: 210 SDIEWIARILWAS 222
             I  + +IL +S
Sbjct: 233 EQIARMHKILQSS 245


>gi|260425213|ref|ZP_05779194.1| putative phage repressor [Citreicella sp. SE45]
 gi|260423785|gb|EEX17034.1| putative phage repressor [Citreicella sp. SE45]
          Length = 228

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 40/210 (19%)

Query: 21  NLTPSGLARKAG------LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
            L+ + LA +        +D ++ NK          R  S E + +I   T   +     
Sbjct: 35  GLSQAALAERLDAVVPKNVDRSTINKMTLG-----KRAISAEELLRISEITGFDVPGEAP 89

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
           +  +     +        ++      GG               V  P   SPH       
Sbjct: 90  IRPTTAIAGKVGAGAQVPVFDAYPKGGGP-------------QVECPPGLSPHG------ 130

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAI-----QVNCGDRLLIKPRTGDIVAKVLIS-R 188
                 + +  SM P+Y  GD+L               G R +++ + G    K + +  
Sbjct: 131 --VVAVEVEGDSMEPVYSAGDLLFYTRDTHDGIPDDAIGHRCIVEDQDGMGWVKQVKAGE 188

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                 L+SLN            ++W AR+
Sbjct: 189 EPGLFHLISLNPGATNMW--NKRLKWAARV 216


>gi|254521402|ref|ZP_05133457.1| SOS-response transcriptional repressor [Stenotrophomonas sp. SKA14]
 gi|219718993|gb|EED37518.1| SOS-response transcriptional repressor [Stenotrophomonas sp. SKA14]
          Length = 160

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +    H  +         ++    SM       GDIL+++ ++    GD ++        
Sbjct: 47  DAIDLHRLLVRNPAATFLYRADGWSMSGAGVSDGDILVVDRSVTPQGGDLVIAIWDGNQP 106

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             KVL       ++L S N  +P   +E S
Sbjct: 107 TCKVLQ-LFESHMELHSANPDFPPIVLEQS 135


>gi|117928571|ref|YP_873122.1| putative phage repressor [Acidothermus cellulolyticus 11B]
 gi|117649034|gb|ABK53136.1| putative phage repressor [Acidothermus cellulolyticus 11B]
          Length = 190

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 18/118 (15%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKP 175
            +  P   +      A+       +    SM PL   G   +   A         +L++ 
Sbjct: 62  QIPEPLGWAKAPRYRAVDPFMFIARVVGRSMEPLIPDGAWCLFRRAQPGSRNNKIVLVQC 121

Query: 176 RT-------GDIVAKVLISRRGRS---------IDLMSLNCCYPVDTV-EMSDIEWIA 216
           R        G    K   S + R+         I L  +N  +P       +DI  +A
Sbjct: 122 RDFTDPETGGSYTVKRYRSEKARTWDGSWRHTVIRLEPINPEFPPIVFRSGADIHVVA 179


>gi|241764024|ref|ZP_04762064.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN]
 gi|241366698|gb|EER61163.1| peptidase S24 and S26 domain protein [Acidovorax delafieldii 2AN]
          Length = 148

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 6/120 (5%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILIL 159
            G      FP+      V   +I      +          + +  SM       G I+ +
Sbjct: 25  CGVSVRAGFPSPADDFVVERLDIM---QLLVKHPQATYFWRVRGDSMRDAGIEDGSIIAV 81

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + AI+      ++     G+   K L  +R   I L + N  YP      S    +  ++
Sbjct: 82  DRAIKPKHNSIVVAIVD-GECTVKYLH-QRAGRIKLRAANPTYPDIIPRDSQTIEVWGVV 139


>gi|329298544|ref|ZP_08255880.1| DNA polymerase V subunit UmuD [Plautia stali symbiont]
          Length = 98

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            +     + +  SM     R+GD+L+++S++     D ++     G+   K L +     
Sbjct: 4   PSATYFVRVEGDSMRDANIREGDLLVVDSSLNARHDDIVIAAIN-GEFTVKRLQTHP--C 60

Query: 193 IDLMSLNCCYPV 204
           + LM +N  Y  
Sbjct: 61  VQLMPMNPRYQP 72


>gi|271969128|ref|YP_003343324.1| XRE family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270512303|gb|ACZ90581.1| putative transcriptional regulator, XRE family [Streptosporangium
           roseum DSM 43021]
          Length = 199

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+  +  ++ S LA   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 13  QVGSRLKRIRTQRGISLSALAEATGISKSTLSRLETGQ-----RRPSLELLLPIAQAHQV 67

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L+  P         K          P                       P     +
Sbjct: 68  PLDELVGAPEVGDPRIRSKPSVRNGRTVIPLTVHPGALQAWKSIIPAEQNRPEPVTHEGY 127

Query: 128 NGIYAIQTQDTRH 140
             +Y +  +    
Sbjct: 128 EWLYVLSGRMRLI 140


>gi|182624278|ref|ZP_02952063.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177910496|gb|EDT72869.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 223

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I    E+  +T   LA+K G+     N+ +           S   + K+L     
Sbjct: 3   RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118
            I  ++           +K+                                    +  +
Sbjct: 61  DINMVVTDEELQKELKAEKQVRQRKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                +   +       +    + ++  M     ++ D+ +  S  ++      L++   
Sbjct: 121 ATASNKIDGHTA----NKVFYLRIENNDMNGYRIQENDLALCYSIKEIENNSICLVEFN- 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           G  V + +         L+S N     +T  + +++ IA+
Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEVKAIAK 215


>gi|114561448|ref|YP_748961.1| LexA repressor [Shewanella frigidimarina NCIMB 400]
 gi|122301038|sp|Q089E2|LEXA_SHEFN RecName: Full=LexA repressor
 gi|114332741|gb|ABI70123.1| SOS-response transcriptional repressor, LexA [Shewanella
           frigidimarina NCIMB 400]
          Length = 204

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 59/215 (27%), Gaps = 36/215 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I + I        + P  + +A + G    S N ++             +
Sbjct: 1   MRPLTPRQAEILDLIKNNIAETGMPPTRAEIANRLGFK--SANAAEEH----------LK 48

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ K                                L        G    G    G    
Sbjct: 49  ALAK-----------------KGFIEIMPGTSRGIRLPQEEQVETGLPLIGQVAAGEPIL 91

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + +  SM  +   +GD+L ++   Q   G  + +  
Sbjct: 92  AQEHVEQYYQVDPNMFKPAADFLLRVRGDSMKNIGILEGDLLAVHKMQQARNGQVV-VAR 150

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K    ++G  I L + N  Y    V++S
Sbjct: 151 VDDDVTVKRF-EQKGNVIYLHAENEDYNPIKVDLS 184


>gi|145642325|ref|ZP_01797888.1| transcriptional activator-regulatory protein [Haemophilus
           influenzae R3021]
 gi|145272982|gb|EDK12865.1| transcriptional activator-regulatory protein [Haemophilus
           influenzae 22.4-21]
          Length = 181

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 21/174 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+  S       +  + E   L+ +  ++  G+   + +      + G+ R P   +I +
Sbjct: 1   MSDLS-----TRLKTLLEEKGLSMNAFSKMVGVSQPAISDI----VSGKTRSPK--NIVE 49

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVG 119
           I  A    +  L                 +             +       G+       
Sbjct: 50  IATALGVDVNWLKTGEGEPIAQGSLISSLVSTDSDEHHRFRVDYLDVQAAAGHSGIENAD 109

Query: 120 VPEIRSPHNGI---------YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
            PE+                 +     +       SM+P   KGDI+      Q
Sbjct: 110 YPEVIQSIYFSKEGLLEIVGKSTNDGISLINVPTDSMVPTINKGDIVFCRYQSQ 163


>gi|1854946|gb|AAB48301.1| RvuZ homolog [Rattus norvegicus]
          Length = 79

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                     SM       GD LI++ A++   GD ++     GD+  K L     +S  
Sbjct: 5   HTYVVLVSGDSMTGAGIFDGDYLIVSRALEAKSGDVVVACLN-GDVFVKRLGR-CQKSYV 62

Query: 195 LMSLNCCYPVDTVEMSD 211
           L S +  Y    V   D
Sbjct: 63  LQSEHPDYAPRYVLDDD 79


>gi|332883114|gb|EGK03398.1| hypothetical protein HMPREF9456_02035 [Dysgonomonas mossii DSM
           22836]
          Length = 231

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 65/227 (28%), Gaps = 24/227 (10%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++++ E   L P+  A   GL+ T   +     I  + +  ST    KILA         
Sbjct: 9   LNKILENEKLNPNQFAESIGLERT---QPIYDIINCKVKKISTNYAKKILAVYPHYSYNW 65

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIRSPHNGI 130
           L     +    + +                 +       G     +   +PE        
Sbjct: 66  LTTGEGEMLKIKSEVT----PKAESDYMMVEYVDLRASAGRLGGADIDLLPETHVRLVPK 121

Query: 131 YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDR-----LLIKPRTGDIV 181
                     +    SM          GD +++      +  D      + +       V
Sbjct: 122 EYKNGGFLVVRVDGDSMDDGTKRSLCDGDEVLIKEKKDFHVKDLPIKKTVFVITSREGNV 181

Query: 182 AKVLISR--RGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWASQ 223
            K +         I   S N  YP   +E+SD   I  + +++ A Q
Sbjct: 182 LKQIKEINTEEGYIICHSFNPIYPDFKMELSDIYQIFIVCKVV-ARQ 227


>gi|205320764|gb|ACI02880.1| RumA [uncultured bacterium HHV216]
          Length = 193

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 49/179 (27%), Gaps = 3/179 (1%)

Query: 42  KRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
           K    +G  R        K +      I ++ +    + + T      I L+        
Sbjct: 6   KGGYRKGSGRKAIYNEPTKTMRVPESRIVEIKNFLAGNKKPTFNDVASITLINPTTFKRI 65

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
                 V           + +    +  +   +      K    SM        D L+++
Sbjct: 66  PLASEKVAAGFPSPAQDYIDKTLDMNEHLVKNEAATFVVKVASLSMRDAGIEIDDELLVD 125

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +++    D ++      D   K L+   G    L + N  Y    +       I  ++
Sbjct: 126 RSLEAKHEDIVIALID-NDFTVKRLM-VEGDKCWLKAENPDYDDIHLNDCQELLIWGVV 182


>gi|86148646|ref|ZP_01066927.1| LexA repressor [Vibrio sp. MED222]
 gi|218710904|ref|YP_002418525.1| LexA repressor [Vibrio splendidus LGP32]
 gi|254809110|sp|B7VM94|LEXA_VIBSL RecName: Full=LexA repressor
 gi|85833565|gb|EAQ51742.1| LexA repressor [Vibrio sp. MED222]
 gi|218323923|emb|CAV20284.1| LexA repressor [Vibrio splendidus LGP32]
          Length = 206

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIEDCGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KEAIEIIPGASRGIRILLEDAANEEQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E+    +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVEMHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G ++ L + N  +    V++ 
Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIHVDLE 186


>gi|153835507|ref|ZP_01988174.1| LexA repressor [Vibrio harveyi HY01]
 gi|148867920|gb|EDL67132.1| LexA repressor [Vibrio harveyi HY01]
          Length = 206

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIEDTGMPPTRAEIARELGF---------------RSANAAQE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KQAIEIIPGASRGIRILLEDAANDDQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVESHYQVDPAMFKPKADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G ++ L + N  +    V++
Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIQVDL 185


>gi|319762557|ref|YP_004126494.1| peptidase s24/s26a/s26b, conserved region protein [Alicycliphilus
           denitrificans BC]
 gi|330824653|ref|YP_004387956.1| peptidase S24/S26A/S26B [Alicycliphilus denitrificans K601]
 gi|317117118|gb|ADU99606.1| Peptidase S24/S26A/S26B, conserved region protein [Alicycliphilus
           denitrificans BC]
 gi|329310025|gb|AEB84440.1| Peptidase S24/S26A/S26B, conserved region [Alicycliphilus
           denitrificans K601]
          Length = 161

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 11/136 (8%)

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVP--------EIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
             +         P G     +G P        +    +  +         ++ +  SM+ 
Sbjct: 17  GPAQIDAHVLRLPVGAVHVALGFPSPAEDFEDDRVDLNEMLVRNPPATFLYRAEGWSMIQ 76

Query: 150 L-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                GD+L+++ +++   GD ++        V KVL    G  ++L   N       + 
Sbjct: 77  AGICDGDVLVVDRSVRPQHGDVVIAMWDGNAPVCKVLH-VCGDHVELHGRNPAIASIVLP 135

Query: 209 MS-DIEWIARILWASQ 223
              ++E  A +  A Q
Sbjct: 136 PDTEVEIFAVVGVARQ 151


>gi|29348341|ref|NP_811844.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340245|gb|AAO78038.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
          Length = 241

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 51/209 (24%), Gaps = 21/209 (10%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA   G+   + +                  +   L   +                + 
Sbjct: 29  SELASYLGVARATLSNWCARNSIDFP------LLLNKLRHVDYNWLLTGKGSPLHDPKSF 82

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI--------QTQ 136
              K    +    +            T                   YA+           
Sbjct: 83  DNGKIRGEVETIHNSKTTEAIDDRSVTLYDITAAANLRTLLSDKRQYALGKILIPSIPAC 142

Query: 137 DTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRRG 190
           D        SM P+ + GDI+    +N+   V  G+  ++         +  K +     
Sbjct: 143 DGAIFVNGDSMYPILKSGDIVGFKGINNFSNVIYGEMYIVAFHLDGDQYLTVKYVNRSEK 202

Query: 191 RSID-LMSLNCCYPVDTVEMSDIEWIARI 218
                L+S N  +    + +  I+ +A +
Sbjct: 203 EGYVKLVSYNPHHEPMDLPVDTIQDMAIV 231


>gi|119356859|ref|YP_911503.1| SOS mutagenesis protein UmuD [Chlorobium phaeobacteroides DSM 266]
 gi|119354208|gb|ABL65079.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Chlorobium phaeobacteroides DSM 266]
          Length = 150

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + + +      +  +          + + +SM     R+GDIL+++ ++    GD  +
Sbjct: 40  ADDAMEL--GLDLNKALIRHPEATFYARVKGSSMVEANLREGDILVIDKSLHPKNGDIAI 97

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G+   K + S+    + LM  N  +    +   +   +  I+
Sbjct: 98  CFLD-GEFTVKRI-SQDKSGLSLMPANDAFKPIRITEENDFLVWGIV 142


>gi|319900303|ref|YP_004160031.1| CI repressor [Bacteroides helcogenes P 36-108]
 gi|319415334|gb|ADV42445.1| CI repressor [Bacteroides helcogenes P 36-108]
          Length = 266

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 58/223 (26%), Gaps = 20/223 (8%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E + R     N  T S LA   G+  ++ +                  + +        +
Sbjct: 39  EIVKRAKLEKNFKTDSELAAFLGISRSTLSNWIARNSIDFP-----LVLGRFGDVDYNWL 93

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-------VGVPE 122
                 P       E       +       +    D       +               +
Sbjct: 94  LTGNGSPALRPAFCESPLARGEVELIHNPKTTEALDDRDVSLYDISAAANLKTLLTDKSQ 153

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTG 178
                  I  +   D        SM P+ + GDI+   S       +     ++   R G
Sbjct: 154 HILGSIRIPNVPRCDGAVYVSGDSMYPILKAGDIIGFRSIQDFASVIFGEMYIVSFQRDG 213

Query: 179 D--IVAKVL-ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           D  +  K +  S     + L+S N  +    + + DI  +  +
Sbjct: 214 DEYLTVKYVNHSDAPDCLKLVSYNPHHDPMDLPLKDINAMGIV 256


>gi|118590964|ref|ZP_01548364.1| putative prophage repressor [Stappia aggregata IAM 12614]
 gi|118436486|gb|EAV43127.1| putative prophage repressor [Stappia aggregata IAM 12614]
          Length = 244

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 72/241 (29%), Gaps = 26/241 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M       +   +  + +R  L+   +AR  G  + +S  +        +   PS + + 
Sbjct: 1   MDMDEQSAVSRQLADLKDRSGLSIRAIARAMGYQNASSIQRYFSADY-MKPALPS-DFVA 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           K+L        +                 ++     P   +      G    G    +  
Sbjct: 59  KLLPVL-LGKGEQPITREDILALAPDSITDLDASSAPSRAATPLEIKGQVAAGLWMESAL 117

Query: 120 VPEI----RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN----SAIQVNCGDR- 170
                    S    +          +    S+  +   GD ++      + +++  GD  
Sbjct: 118 FETDAAKKTSFAGDLRFPSENQYLLQINGESLNRIAWNGDFILCVDYLGAGLEIKSGDLA 177

Query: 171 LLIKPRTGDIVA----KVLISRRGRSIDLMSL-N-CCYPVDTV------EMSDIEWIARI 218
           ++ + R G        K +I R    I+L    N   +    +      E +++  IA++
Sbjct: 178 VVERTRDGGHTIERTAKRIIRR-NGQIELQPESNDPRFQEPVIFNEHDEEATEVRIIAKV 236

Query: 219 L 219
           L
Sbjct: 237 L 237


>gi|284005775|ref|YP_003391594.1| Peptidase S24, S26A and S26B, conserved region [Spirosoma linguale
           DSM 74]
 gi|283820959|gb|ADB42795.1| Peptidase S24, S26A and S26B, conserved region [Spirosoma linguale
           DSM 74]
          Length = 178

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 4/135 (2%)

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHNGIYAIQTQD 137
                ++      +     +     F S     G         E     +      +   
Sbjct: 1   MIAPDDRIPIHDIVKATVQTTFFIPFYSYYVNAGFASPAESYIERACDLNELCIDNEEAT 60

Query: 138 TRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
              +    SM      +GD+L+++ + + + G  +++         K +     + + L+
Sbjct: 61  YFVRVGSDSMSGDRIERGDVLVVDCSKEPSDGKIVVVWYNGDHA-VKRIYHVE-KMVVLL 118

Query: 197 SLNCCYPVDTVEMSD 211
           S N  Y    V   +
Sbjct: 119 SSNPKYDPIYVHPGE 133


>gi|326326060|ref|YP_004250869.1| putative Lambda repressor-like, DNA-binding fused with Peptidase
           S24, S26A, S26B and S26C [Vibrio nigripulchritudo]
 gi|323669111|emb|CBJ93158.1| putative Lambda repressor-like, DNA-binding fused with Peptidase
           S24, S26A, S26B and S26C [Vibrio nigripulchritudo]
          Length = 200

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 67/223 (30%), Gaps = 33/223 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S  ++ + ++ +     LT   + R AG+   +  K +R         P  E +  
Sbjct: 1   MNQMS--ELGKRLENLRLGQGLTQEQMGRIAGVTGVTVGKWERGDAV-----PRDEKLKA 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + A    +   L          +  +++ + +  +                 +  +T+  
Sbjct: 54  VAAHFRVSFEYLRVGFDQTALLSATQQEVVVIPSYR----------------SGEDTLIY 97

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGD 179
                P    +           +  +M  ++  G  +++++    +  G           
Sbjct: 98  DARLLPQQRSH----HLVYLAIEGGNMGDVFPVGSRVVVDTDDLHLKEGQF-YALELNEF 152

Query: 180 IVAKVLISRRGRSIDLM-SLN-CCYPVDTVE-MSDIEWIARIL 219
           +  + +       + L    N   +   T   M+ I  I R++
Sbjct: 153 LTIRKVFYTTNG-VSLEMPGNTQHFESITFPEMNRITVIGRVV 194


>gi|319778233|ref|YP_004129146.1| Error-prone repair protein UmuD [Taylorella equigenitalis MCE9]
 gi|317108257|gb|ADU91003.1| Error-prone repair protein UmuD [Taylorella equigenitalis MCE9]
          Length = 200

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +    +  +          ++   SM+ +   K DILI++ ++     D + +     + 
Sbjct: 92  DYLDFNTYLVQNPMATIAVRSGGDSMIDVGISKDDILIIDRSVTAKHMDIV-MADIGNEY 150

Query: 181 VAKVLISRRGRSIDLMSLNCC--YPVDTV-EMSDIEWIA 216
             K L      S++L   N    Y      +   +  + 
Sbjct: 151 TIKRLCILPDGSVELRPENRSGIYTPIKFRDQEQLRIVG 189


>gi|237710566|ref|ZP_04541047.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|229455288|gb|EEO61009.1| predicted protein [Bacteroides sp. 9_1_42FAA]
          Length = 256

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 70/227 (30%), Gaps = 42/227 (18%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTS----FNKSKRFGIEG--RNRWPSTESIFKILAA 64
           + ID   E+++++ + L    GL   +       S++   +     R  S  +I K+   
Sbjct: 55  KTIDAFCEKYDVSRAWLYTGEGLFAKTPSGQIEPSEKDIRDALKNARMQSDSTISKVAPY 114

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
             + +                    + + Y P   +  F +S         +   +PE  
Sbjct: 115 LQDIL--------------------VKVKYVPMDAAASFVESLYNTAYEIDSYGVMPEEG 154

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVA 182
              +  Y         + +  SM P    G  ++     +        ++       +  
Sbjct: 155 EVLDDSY------MVFQVRGDSMEPTIPDGAKILARKIEEGLWESASGVVSIVYGKTLSV 208

Query: 183 KVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWIA---RILWASQ 223
           K ++         + L + N  +    VE  +I  +    RI+  SQ
Sbjct: 209 KRILKNSLFLDNVLTLKADNPKHGQLDVERREIRGMWQALRII--SQ 253


>gi|330966814|gb|EGH67074.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 97

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                K    SM         +++++ + + + G  ++      + + K+LI + G  + 
Sbjct: 7   HIYVAKIDGDSMEGAKIFHDSLVVVDRSRKPSSGSIVIAALN-NEPLCKILIMQ-GDHVV 64

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L S N  YP   +   +   I  ++
Sbjct: 65  LKSANPAYPPRHILEGEELSIWGVV 89


>gi|196234434|ref|ZP_03133260.1| peptidase S24 and S26 domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196221490|gb|EDY16034.1| peptidase S24 and S26 domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 163

 Score = 60.2 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 3/120 (2%)

Query: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILN 160
           G    G  P G    T+  P        + + +  D   + +  SM+      GD  +L 
Sbjct: 35  GLPVLGEIPAGPLAATLAEPVEIMEDENLLSWRAGDFLLRVKGDSMIGDGILPGDYALLR 94

Query: 161 SAIQVNCGDRL-LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             I  + G+   +      +   K +   + + + L + N  Y    V   +   +A + 
Sbjct: 95  PDIHCDQGEIAAVHARDDYEGTLKHVFVEKDQ-VRLKASNPEYDDIIVSSHEWRGVAGVF 153


>gi|328725290|ref|XP_003248415.1| PREDICTED: protein umuD-like [Acyrthosiphon pisum]
          Length = 140

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    ++      +     K    SM       GD+LI++SA++   GD ++  
Sbjct: 32  DYVE--QRIDLNDLCVTHPSATYFIKVSGDSMIEGGISDGDMLIVDSAVEPEQGDVVVAA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
              G+   K L+ +    + L  +N  + +  + +    E    +
Sbjct: 90  I-AGEFTVKQLMLKP--CLHLKPMNAAHAIIPIPDPDQFEIFGVV 131


>gi|260888841|ref|ZP_05900104.1| repressor protein CI [Selenomonas sputigena ATCC 35185]
 gi|260861424|gb|EEX75924.1| repressor protein CI [Selenomonas sputigena ATCC 35185]
          Length = 73

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
            +++++    V  GD  + +    +   K LI   G+   L  LN  YP+          
Sbjct: 1   MLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSV 58

Query: 215 IARILWASQ 223
           + +++ ASQ
Sbjct: 59  VGKVV-ASQ 66


>gi|255035795|ref|YP_003086416.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
           18053]
 gi|254948551|gb|ACT93251.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
           18053]
          Length = 273

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 27/223 (12%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET--- 68
            I  +  R  L+   LA K G+     N  +     GR   P+ + +         +   
Sbjct: 11  NIKFLRLRQKLSQEALAEKLGISRVKLNAIE----SGRTANPTVDDLINFSEYFRMSIDS 66

Query: 69  ---------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      Q L           K ++   L            +         + +  
Sbjct: 67  LLKIELSKLSDQKLKDLEEGSELFMKGDQIRVLAITVDKEDKENIEYVPVQARAGYRSGY 126

Query: 120 VPEIRSPHNGIYAIQ-----TQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNC--GDR 170
                      + +             T   SMLP+    DI+   +     V       
Sbjct: 127 ADPEFLATLPRFNLPTVPKNGTFRMFPTVGDSMLPVPEGADIITRYVQDWTTVKPETPCI 186

Query: 171 LLIKPRTGDIVAKVL-ISRRGRSIDLMSLNCCYPVDTVEMSDI 212
           +++K      V K + I++   ++ L S N  Y   TV + ++
Sbjct: 187 VILKGDQD-FVFKQVTINQEAGTMLLQSFNKQYFAYTVPIGEV 228


>gi|110803374|ref|YP_699815.1| LacI family transcription regulator [Clostridium perfringens SM101]
 gi|110683875|gb|ABG87245.1| DNA-binding protein [Clostridium perfringens SM101]
          Length = 223

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I    E+  +T   LA+K G+     N+ +           S   + K+L     
Sbjct: 3   RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118
            I  ++           +K+                                    +  +
Sbjct: 61  DINMVVTDEELQKELKAEKQLRQTKPADVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                +   +       +    K ++  M     ++ D+ +  S  ++      L++   
Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           G  V + +         L+S N     +T  + +++ IA+
Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEVKAIAK 215


>gi|319943589|ref|ZP_08017871.1| LexA repressor [Lautropia mirabilis ATCC 51599]
 gi|319743404|gb|EFV95809.1| LexA repressor [Lautropia mirabilis ATCC 51599]
          Length = 216

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 61/222 (27%), Gaps = 21/222 (9%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M + +   +++ + + R  + H L P+   L    G    +       G     +  +  
Sbjct: 1   MRALTERQRQVLDFLHRHLQTHGLPPTLHELMHAFGWASPA-------GAAKHLQALAAR 53

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++       I  L     +       +  +        + +      G    G    
Sbjct: 54  GLIELSPGKARGIRLLQGAAPAGADAGRDEAGDD------EADTLRLPLVGRVAAGQPIL 107

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   + Q  SM+      GD++   +  Q   G  ++ + 
Sbjct: 108 AGDRIERHLKIDRWLFSPRPDFLLRVQGDSMIDDGILDGDLVAGKATPQALHGQIVIARV 167

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIA 216
             G I  K L  +    + L+  N  +         D     
Sbjct: 168 D-GGITIKRL-WQHNGQVRLLPRNARHVPIDPSPWEDFAIEG 207


>gi|253566820|ref|ZP_04844272.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251944383|gb|EES84872.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 146

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +          +    SM      +GDIL+++ ++++   D  +     GD   
Sbjct: 41  IDLNKELIKHPASTFFGRVVGDSMRDEGIEEGDILVIDKSLELQDDDLAVCFID-GDFTV 99

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +      ++ L+  N  Y +  V   +   +  I+
Sbjct: 100 KRV-RIEPNAVWLIPANPKYSLIKVTKENEFIVWGIV 135


>gi|330938422|gb|EGH42047.1| peptidase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 144

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 17/148 (11%)

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIYAIQT 135
             +   T +  +           +GG +   V P    + +T  + +        Y  + 
Sbjct: 1   MHNVEPTVQPSRFYRYPVISWVEAGG-WSEAVEPYPAGYSDTFEISD--------YKAKG 51

Query: 136 QDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRG 190
           +      +  SM         +G ++++++ I+   G  ++   P + +   K L+    
Sbjct: 52  RAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKLPESNEATFKKLVED-A 110

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
               L  LN  YP   V   + + I  I
Sbjct: 111 GRYFLKPLNPAYPTIAVT-EECKLIGVI 137


>gi|315924489|ref|ZP_07920710.1| prophage repressor [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622193|gb|EFV02153.1| prophage repressor [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 223

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 16/223 (7%)

Query: 1   MTSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M++  HK I  + + ++ +  N T   L+ +  L P S ++  R  +      P   +++
Sbjct: 1   MSNSIHKSIFGQRLKQLMKNFNETTYSLSEQFNLSPPSISRYTRGEM-----APKMTTVY 55

Query: 60  KILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +    +     L+    S   +            +         +D  +F      + +
Sbjct: 56  ALADYFDVNPEWLMGKTVSMYESEILGDTHAAGHAFDISVFDEIRYDRPIFSNHKTADHL 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +P  +    G          ++  D +M P Y  GD++++    ++  G  + +     
Sbjct: 116 SIPIDKLTEWGP------VFGYRIPDNAMQPAYTAGDLVVIRLNTELTSGATVALHVNKE 169

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDIEWIARIL 219
            ++ + +I    + I     N      V  +    ++ I  I+
Sbjct: 170 PMIIRKIILMGNKLIT-QPFNADADAAVYDIRKHHVQTIGTIV 211


>gi|78033458|emb|CAJ30074.1| putative phage-related transcriptional regulator [Magnetospirillum
           gryphiswaldense MSR-1]
 gi|144900669|emb|CAM77533.1| Peptidase S24, S26A and S26B [Magnetospirillum gryphiswaldense
           MSR-1]
 gi|144901118|emb|CAM77982.1| phage-related transcriptional regulator [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 186

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +   + +  +T   +A  AG++ +      R    GR+  PS E +  I  A N    
Sbjct: 7   DRLRARSRQLGMTAGRVAELAGVNRSFVYDIMR----GRSENPSLEKLDLISEALNVERN 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSP-HN 128
            LL         +   E  + +     S        G     ++          RS   +
Sbjct: 63  WLLHGIGGVDGESPIMEDPMGVFVSISSVQVSASMGGGNLVSDEVENGEPYHFQRSWILH 122

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTG 178
            + A          +  SM+P    GD+++++ + +        ++    G
Sbjct: 123 DLKADPNNLRIMHVEGDSMMPTLHSGDVVLVDLSKRLPTPPGIFVLFDGIG 173


>gi|53713153|ref|YP_099145.1| SOS-response transcriptional repressor UmuD-like protein
           [Bacteroides fragilis YCH46]
 gi|52216018|dbj|BAD48611.1| error-prone repair: SOS-response transcriptional repressor UmuD
           homolog [Bacteroides fragilis YCH46]
 gi|301162875|emb|CBW22422.1| putative UmuD/RumA DNA repair protein [Bacteroides fragilis 638R]
          Length = 147

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +          +    SM      +GDIL+++ ++++   D  +     GD   
Sbjct: 42  IDLNKELIKHPASTFFGRVVGDSMRDEGIEEGDILVIDKSLELQDDDLAVCFID-GDFTV 100

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +      ++ L+  N  Y +  V   +   +  I+
Sbjct: 101 KRV-RIEPNAVWLIPANPKYSLIKVTKENEFIVWGIV 136


>gi|302876666|ref|YP_003845299.1| helix-turn-helix domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307687341|ref|ZP_07629787.1| helix-turn-helix domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302579523|gb|ADL53535.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 231

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 19/205 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +     +  L+   LA+K G      N  +             + + K L     
Sbjct: 3   RVGERLKETRIKQGLSQKQLAKKIGAAENFINDIELGRKV--IPEAIIDKLSKALGENLN 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +    D         ++ +K  P    P +      D+             +P      
Sbjct: 61  DMTMYNDEAEEKASEAKRPQKSYPNFSSPKAKKEEAPDAAWSSA-FGSILRSIPVFDYNM 119

Query: 128 NGIYA--------------IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
           N   A               Q +    + +D  ML     KGD+   +   ++    +L 
Sbjct: 120 NKPLATKEFPIKANKINGYSQDKVFMLQIEDDEMLGYRIAKGDLAFCHVENEIQNN-KLY 178

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMS 197
                G+ + + +       I L+S
Sbjct: 179 FVEYKGERMVRQVKKLDNTKILLIS 203


>gi|320539971|ref|ZP_08039629.1| putative DNA polymerase V, subunit D [Serratia symbiotica str.
           Tucson]
 gi|320029959|gb|EFW11980.1| putative DNA polymerase V, subunit D [Serratia symbiotica str.
           Tucson]
          Length = 163

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 7/106 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +            +         +    SM       GD+L++        GD ++  
Sbjct: 56  DYLEQRLSLDDICIRF--PESTYLVRADGHSMRDAGILDGDLLVIECCYPARHGDIVI-A 112

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE-WIARIL 219
              G    K L         L+  N  +    V+  D+E  I  ++
Sbjct: 113 TVDGAFTCKCLQLHP--RPLLLPANPAFAPIEVDNEDMETVIFGVV 156


>gi|168209805|ref|ZP_02635430.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|170712069|gb|EDT24251.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
          Length = 223

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I    E+  +T   LA+K G+     N+ +           S   + K+L     
Sbjct: 3   RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118
            I  ++           +K+                                    +  +
Sbjct: 61  DINMVVTDEELQKELKAEKQVRQRKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                +   +       +    K ++  M     ++ D+ +  S  ++      L++   
Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           G  V + +         L+S N     +T  + +++ IA+
Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEVKAIAK 215


>gi|114777903|ref|ZP_01452817.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1]
 gi|114551690|gb|EAU54242.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1]
          Length = 190

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 7/168 (4%)

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           PS   I  ++  + +   + +D     G   +     +       +          F + 
Sbjct: 23  PSYADIAALVGVSKQGAVKFVDRMVFAGYLQKAPGGRVGPANMFFARPHVGQAPAGFASP 82

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171
                  V  I      +    +          SM+      GD L++      + G  +
Sbjct: 83  ATEALGDVITI---DEYLVEHPSSTVLVAVSGDSMIGAGIHDGDFLVVERKQNPSIGKIV 139

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +     GD   K L     R   L   N  YP        ++    ++
Sbjct: 140 VAIVD-GDFTIKYL-RGDSRGPYLEPANADYPCI-YPEQSLDIYGEVV 184


>gi|291614758|ref|YP_003524915.1| LexA repressor [Sideroxydans lithotrophicus ES-1]
 gi|291584870|gb|ADE12528.1| LexA repressor [Sideroxydans lithotrophicus ES-1]
          Length = 198

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 6/171 (3%)

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-FFDSGVFP 110
           W S  S   +           +             E+    ++ P               
Sbjct: 24  WKSIPSYAALCDVFGIASKSWVKAILDRLEKAGFVERTPDGMWIPSRQFFARPLAEATVQ 83

Query: 111 TGNKWNTVGVPEIRSPHNGIYAI-QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
            G               + +     +  T    +  SM+     +GD+ ++      N G
Sbjct: 84  AGMPVAVNETHGEYFVIDEMLVDKPSTTTMITVKGDSMIDAGIHEGDVAVVEKRHVANIG 143

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           D ++      +   K L   RG+ I L   N  YPV       +E    ++
Sbjct: 144 DIVVAIVD-NEFTLKTLDKERGQYI-LRPANPAYPVIR-PQGTLEIFGVLV 191


>gi|120602096|ref|YP_966496.1| peptidase S24, S26A and S26B [Desulfovibrio vulgaris DP4]
 gi|120562325|gb|ABM28069.1| peptidase S24, S26A and S26B [Desulfovibrio vulgaris DP4]
          Length = 257

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 64/233 (27%), Gaps = 25/233 (10%)

Query: 4   FSHKKIWEAIDRMAER--HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             H+ +   I RM E        S +AR   +   + N+          R P  E++ ++
Sbjct: 24  LEHE-LLAGIKRMCEEQWRG-NVSSMARDLRMPQATLNQFLNGV-----RKPGYETLTRM 76

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L A    I        +              +      +            +  ++    
Sbjct: 77  LDALGIKIVWPGQGEQTTRPVQICAGDIPEDVARS-YRAIPVVTERDALNKSAPSSPEAW 135

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRT 177
            +    +     +T     +    SM PL   GD +I++ A  V      G+  L+    
Sbjct: 136 AMVWKTHPAILQRTNLVCVRVSQDSMAPLLHVGDYVIIDRADCVVTEQGHGNIFLVNDPQ 195

Query: 178 GDIVAKVLISR---RGRSIDLMSLNCCYPV--DTVEMSDIEWI------ARIL 219
                K    +       +     N   P     +   D  ++       R++
Sbjct: 196 DGPTIKRARIQSTPTSTVLFCYCDNVRIPPSFIQIPQDDDNYLSHGVLGGRVV 248


>gi|261493123|ref|ZP_05989659.1| hypothetical protein COK_1537 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496454|ref|ZP_05992837.1| hypothetical protein COI_2175 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307887|gb|EEY09207.1| hypothetical protein COI_2175 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311211|gb|EEY12378.1| hypothetical protein COK_1537 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 219

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 14/210 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R  +  ++  +  A + G+  +             +R P+ + I K+L         L
Sbjct: 9   VKRRIKELDIHRTVFAERVGVSSSGLGSWLN-----ESRVPNLDQIAKMLYLVGIDSVTL 63

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                        K  +I  +    S + GF + G         T    +         A
Sbjct: 64  HSADCLMSVRESYKLNKIEGVPVKGSLAFGFPEMGNAVEKATLKTAEQKQFIDFR----A 119

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL-LIKPRTGDIVAKVLI---SR 188
              +   ++   T++ P  R+ + ++++   +    D + +    T +   K L+    +
Sbjct: 120 SSPRSEAYQILGTALSPRIRRNEFVVIDPNKKPLETDEVLVYFKETEEYAIKRLVELAKK 179

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            G  + L  LN       VE   I  + RI
Sbjct: 180 EGDPVFLADLNQDMLRMAVEEDAIT-MYRI 208


>gi|184159083|ref|YP_001847422.1| hypothetical protein ACICU_02763 [Acinetobacter baumannii ACICU]
 gi|332875911|ref|ZP_08443697.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
 gi|183210677|gb|ACC58075.1| hypothetical protein ACICU_02763 [Acinetobacter baumannii ACICU]
 gi|332735777|gb|EGJ66818.1| peptidase S24-like protein [Acinetobacter baumannii 6014059]
          Length = 258

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 65/244 (26%), Gaps = 39/244 (15%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAATN-- 66
             + ++ E+++ T    A       +   +  +   G  G+          +I    N  
Sbjct: 9   ANLIKLLEKYS-TQKEFAELVDTPTSYITQITQGTLGKNGKPVSLGNTVARRIEKMLNLE 67

Query: 67  -----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---------- 111
                       +           K  ++ +       S    ++   P           
Sbjct: 68  HGFMDVDHSTDHNNIVPFNPQVNPKSDDLRISPVEFKSSFENKNTIKIPVHKNVRASCGD 127

Query: 112 ------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
                  +  + + V        GI     +     + + SM P       L +++    
Sbjct: 128 GVANFLEDVTDYLEVDPNFLRLMGINIKPERLRIIYSTEYSMWPTVVPDSPLFVDTTPVD 187

Query: 166 ----NCGDRLLIKPRTGDIVAKVLISRRGR--SIDLMSLNCC---YPVDTVEMS---DIE 213
                 GD + +      +  K +    G   ++ L S N     YP + +      ++ 
Sbjct: 188 TSAMISGD-VYVFMHNSLLRMKRVFISYGDEKTVRLQSDNPDKKKYPDEIITREQLNELV 246

Query: 214 WIAR 217
           ++ R
Sbjct: 247 FLGR 250


>gi|262392923|ref|YP_003284777.1| SOS-response repressor and protease LexA [Vibrio sp. Ex25]
 gi|262336517|gb|ACY50312.1| SOS-response repressor and protease LexA [Vibrio sp. Ex25]
          Length = 207

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 33/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                 +      +   I L     +   G    G    G    
Sbjct: 46  HLKALARK-----------QAIEIIPGASRGIRILLDDSAANDEQGLPLIGQVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 95  AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G +I L + N  +    V++
Sbjct: 154 VDDDVTVKRLERK-GSTILLHAENEEFAPIQVDL 186


>gi|18311546|ref|NP_563480.1| hypothetical protein CPE2564 [Clostridium perfringens str. 13]
 gi|18146230|dbj|BAB82270.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 223

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I    E+  +T   LA+K G+     N+ +           S   + K+L     
Sbjct: 3   RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118
            I  ++           +K+                                    +  +
Sbjct: 61  DINMVVTDEELQKELKAEKQVRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                +   +       +    K ++  M     ++ D+ +  S  ++      L++   
Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           G  V + +         L+S N     +T  + +I+ IA+
Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEIKAIAK 215


>gi|330902832|gb|EGH33834.1| repressor protein c2 [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 140

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
                 +    P++ +  +G         +P G   +T  + +        Y  + +   
Sbjct: 2   HTVQPSRFYRYPVISWVEAGGWSEAVE-PYPAGY-SDTFEISD--------YKAKGRAFW 51

Query: 140 HKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSID 194
              +  SM         +G ++++++   V  G  ++   P + +   K L+   G    
Sbjct: 52  LVVRGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVIAKLPASNEATFKKLVEDGGTRY- 110

Query: 195 LMSLNCCYPVDTVEMSDIEWIA 216
           L  LN  Y +      D   I 
Sbjct: 111 LKPLNPAYKMIECGA-DCRIIG 131


>gi|89075957|ref|ZP_01162329.1| umuD protein [Photobacterium sp. SKA34]
 gi|89048306|gb|EAR53885.1| umuD protein [Photobacterium sp. SKA34]
          Length = 242

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 10/162 (6%)

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +            +L       + K+  ++ ++         F    + P  +    + +
Sbjct: 82  VFEQHGSNHIARWNLLCQHIAASGKEWDDLHVIGVITLSIHHFRQPPLLPWHHDLTELDL 141

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                 H  +   +      +    SMLP     DIL+L   +     D ++      D+
Sbjct: 142 ------HQLVITQEHSTILCRAAGLSMLPYIWDHDILVLERHLNPENEDVIV-LSLNNDL 194

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
           V K +         L S N  +    +   D   +  ++  S
Sbjct: 195 VVKRVNLHSR---TLYSDNPSFQPHQINPDDYTRLHGVVRYS 233


>gi|157374197|ref|YP_001472797.1| XRE family transcriptional regulator [Shewanella sediminis HAW-EB3]
 gi|157316571|gb|ABV35669.1| transcriptional regulator, XRE family [Shewanella sediminis
           HAW-EB3]
          Length = 184

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 6/140 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+  
Sbjct: 2   HLDIGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGL 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIR 124
             ++     +  S G   +   +   LL               +P           P   
Sbjct: 57  PMSLVDFFSMEDSGGSEQKVVYRSDELLDIGDGNLDYKLVGRDYPNRAMSVMSETYPPGS 116

Query: 125 SPHNGIYAIQTQDTRHKTQD 144
                +   + ++     + 
Sbjct: 117 DTGEEMLKHEGEEAAMVIEG 136


>gi|110834444|ref|YP_693303.1| LexA repressor [Alcanivorax borkumensis SK2]
 gi|110647555|emb|CAL17031.1| LexA repressor [Alcanivorax borkumensis SK2]
          Length = 163

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + E    +             + +  SM+      GDILI++ +++   GD ++     
Sbjct: 49  YLDEHLDLNRLCIRHPASTFLLRVEGDSMVDAGIYSGDILIVDRSLEAVAGDVVV-ASLE 107

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G+   K L         L   N  Y    +    ++    +
Sbjct: 108 GEFTVKELQLLPVP--MLKPRNAAYAPILIGEEGLDLFGVV 146


>gi|168205827|ref|ZP_02631832.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|168213491|ref|ZP_02639116.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|169343302|ref|ZP_02864312.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169298600|gb|EDS80681.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|170662662|gb|EDT15345.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170715060|gb|EDT27242.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
          Length = 223

 Score = 59.8 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I    E+  +T   LA+K G+     N+ +           S   + K+L     
Sbjct: 3   RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118
            I  ++           +K+                                    +  +
Sbjct: 61  DINMVVTDEELQKELKAEKQVRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                +   +       +    K ++  M     ++ D+ +  S  ++      L++   
Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           G  V + +         L+S N     +T  + +++ IA+
Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEVKSIAK 215


>gi|224538220|ref|ZP_03678759.1| hypothetical protein BACCELL_03111 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520152|gb|EEF89257.1| hypothetical protein BACCELL_03111 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 255

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 57/208 (27%), Gaps = 19/208 (9%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           + LA   G+  ++ +                  + K+       +      P S  ++  
Sbjct: 43  ADLAAYLGVSRSTLSNWIARNSIDFP-----LLLSKMKDVDYNWLLVGKGTPMSHLQSYH 97

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-------AIQTQD 137
            +     +       +            +      +  + +  +          +I   D
Sbjct: 98  SELATGNVEIIHNPKTPDAMKDRSVVLYDITAAANLRTLLANKHQFVMGRIQIPSIPVCD 157

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGD---IVAKVLISRR-G 190
                   SM P+ + GDI+        +    G+  L+         +  K +      
Sbjct: 158 GALYISGDSMYPILKSGDIVGFKEMNSFSNVIYGEMYLVSFDIDGDEYLAVKYVNRSEQE 217

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             I L+S N  +    V  + I+ +A +
Sbjct: 218 GCIKLVSYNPHHEPMDVPFASIQAMAIV 245


>gi|238607367|ref|XP_002396959.1| hypothetical protein MPER_02697 [Moniliophthora perniciosa FA553]
 gi|215470480|gb|EEB97889.1| hypothetical protein MPER_02697 [Moniliophthora perniciosa FA553]
          Length = 81

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN-CCYPVD 205
           M P    G  + +N+  +     ++      G    K+L       + + S N   +  +
Sbjct: 1   MEPNIPDGTTVAVNTDDKKIVDGKIYAINEGGWKRIKILYRVGPDKVSVRSFNSEEHKDE 60

Query: 206 TVEMSDIEWIARILWAS 222
              ++ IE I R+ W S
Sbjct: 61  EKNLTAIEIIGRVFWWS 77


>gi|60681418|ref|YP_211562.1| putative UmuD/RumA DNA repair protein [Bacteroides fragilis NCTC
           9343]
 gi|60492852|emb|CAH07627.1| putative UmuD/RumA DNA repair protein [Bacteroides fragilis NCTC
           9343]
          Length = 145

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +          +    SM      +GDIL+++ ++++   D  +     GD   
Sbjct: 40  IDLNKELIKHPASTFFGRVVGDSMRDEGIEEGDILVIDKSLELQDDDLAVCFID-GDFTV 98

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +      ++ L+  N  Y +  V   +   +  I+
Sbjct: 99  KRV-RIEPNAVWLIPANPKYSLIKVTKENEFIVWGIV 134


>gi|168217329|ref|ZP_02642954.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|182380554|gb|EDT78033.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 223

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I    E+  +T   LA+K G+     N+ +           S   + K+L     
Sbjct: 3   RVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118
            I  ++           +K+                                    +  +
Sbjct: 61  DINMVVTDEELQKELKAEKQVRQRKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                +   +       +    K ++  M     ++ D+ +  S  ++      L++   
Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           G  V + +         L+S N     +T  + +I+ IA+
Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEIKAIAK 215


>gi|162134169|gb|ABX82515.1| UmuD [Acinetobacter genomosp. 3 str. DSM 21653]
 gi|162134175|gb|ABX82518.1| UmuD [Acinetobacter calcoaceticus subsp. anitratus]
          Length = 167

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +    +  +   +      K    SML       D LI++ +I    GD ++     
Sbjct: 68  DIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDINDPLIVDRSIPAKSGDIVIALID- 126

Query: 178 GDIVAKVLISRR---GRSIDLMSLNCCYPVDTVEMSDIEWI 215
            D   K L+         + L + N  Y    +E      I
Sbjct: 127 NDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVI 167


>gi|325497801|gb|EGC95660.1| putative prophage repressor CI [Escherichia fergusonii ECD227]
          Length = 125

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 40/112 (35%), Gaps = 7/112 (6%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCG 168
                  + +I   ++    +       K +  SM         +G ++++++  +   G
Sbjct: 9   EACEPYDIKDIDEWYDSDVNLLGDGFWLKVEGDSMTSPVGQSIPEGHMVLVDTGREPVNG 68

Query: 169 DRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             ++       +   K L+   G+   L  LN  +P+  +  +  + I  ++
Sbjct: 69  SLVVAKLTDANEATFKKLVIDGGQKY-LKGLNPSWPMTPINGN-CKIIGVVV 118


>gi|90581348|ref|ZP_01237144.1| umuD protein [Vibrio angustum S14]
 gi|90437458|gb|EAS62653.1| umuD protein [Vibrio angustum S14]
          Length = 235

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 10/162 (6%)

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +     +      +L       + K+  ++ ++         F    + P  +    + +
Sbjct: 75  VFEQHGDNHIARWNLLCQHIAASGKEWDDLHVIGVITLSIHHFRQPPLLPWHHDLTELDL 134

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                 H  +   +      +    SMLP     DIL+L   +     D ++      D+
Sbjct: 135 ------HQLVITQEHSTILCRAAGLSMLPYIWDHDILVLERHLNPENEDVIV-LSLNNDL 187

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
           V K +         L S N  +    +   D   +  ++  S
Sbjct: 188 VVKRVNLHSR---TLYSDNPSFKPQKINQDDYTRLHGVVRYS 226


>gi|257894829|ref|ZP_05674482.1| peptidase S24/S26A/S26B [Enterococcus faecium 1,231,408]
 gi|257831208|gb|EEV57815.1| peptidase S24/S26A/S26B [Enterococcus faecium 1,231,408]
          Length = 190

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 13/134 (9%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTV--GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
                     G+   G+         P               D        SM P +  G
Sbjct: 58  EDEKQEVSYVGLLSAGHGCPNYDKERPFGTVTMRESQIPSHYDLAFMVNGNSMYPTFENG 117

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL--------NCCYPVDT 206
           +I+ +     V  G    ++   G+   K +     R + L+SL        N  YP   
Sbjct: 118 EIVFIKQTPNVMNGQIGAVEIN-GEAFLKKMY-VENRRLRLVSLNCECDENGNRLYPDFY 175

Query: 207 VEM-SDIEWIARIL 219
            +   D+  I R++
Sbjct: 176 ADEYDDLYVIGRVI 189


>gi|265763248|ref|ZP_06091816.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255856|gb|EEZ27202.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 146

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +          +    SM      +GDIL+++ ++++   D  +     GD   
Sbjct: 41  IDLNKELIKHPVSTFFGRVVGDSMRDEGIEEGDILVIDKSLELQDDDLAVCFID-GDFTV 99

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K +      ++ L+  N  Y +  V   +   +  I+
Sbjct: 100 KRV-RIEPNAVWLIPANPKYSLIKVTKENEFIVWGIV 135


>gi|261492931|ref|ZP_05989477.1| S24 family peptidase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496719|ref|ZP_05993094.1| S24 family peptidase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307558|gb|EEY08886.1| S24 family peptidase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311472|gb|EEY12629.1| S24 family peptidase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 242

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSI 193
            +         SM P    GD L+++ +     GD  + I      +  K +       +
Sbjct: 147 KKCAVFWASGDSMYPTIDNGDQLLVDLSRNEIRGDNNIYIVQNGDSVWVKRVKLLWDG-V 205

Query: 194 DLMSLN-CCYPVDTVEMSD---IEWIARIL 219
           +L+S N   Y +  +       ++ I +++
Sbjct: 206 ELISDNREEYELIKITADQAQNLQIIGQVV 235


>gi|156603892|ref|YP_001429839.1| repressor [Staphylococcus phage tp310-1]
 gi|154817978|gb|ABS87406.1| repressor [Staphylococcus phage tp310-1]
          Length = 256

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 68/258 (26%), Gaps = 48/258 (18%)

Query: 6   HKKIWEAIDRMAERHNLTPSGL-------ARKAGLD--PTSFNKSKRFGIEGRNRWPSTE 56
            +K+   +  + +  NL    +        +K G+    ++ ++                
Sbjct: 2   REKVSNRLKHIMKIRNLKQVDIINKSKPYQKKLGISLSKSTLSQYINDVQS--PDQDRIY 59

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF------- 109
            + K L      +       +       + E  +  +    S         V        
Sbjct: 60  LLSKTLNVGEAWLMGYDVDSYRVPDEERQDETIMSKINNIFSQLTPPRQENVLNYANEQL 119

Query: 110 ------------------------PTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKT 142
                                    TG         +I          +T    D     
Sbjct: 120 EEQNKVTSIDGYKESKLVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILV 179

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P+ ++G    +     +  G   L+    G  + K +       I+L+SLN  Y
Sbjct: 180 NGDSMEPMLKQGTYAFIKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKY 237

Query: 203 PVDTV-EMSDIEWIARIL 219
               V   S+I+ + +++
Sbjct: 238 DDIKVASFSNIKVMGKVV 255


>gi|260774816|ref|ZP_05883718.1| SOS-response repressor and protease LexA [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609241|gb|EEX35396.1| SOS-response repressor and protease LexA [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 205

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 35/215 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                          + I +L    +   G    G    G    
Sbjct: 46  HLKALARK-------------QAIEIIPGASRGIRILLEDAANDDGLPLIGQVAAGEPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V+ G  + +  
Sbjct: 93  AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVHDGQVV-VAR 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G ++ L + N  +    V++S
Sbjct: 152 VDDDVTVKRLERK-GSTVLLHAENEEFEPIKVDLS 185


>gi|298529605|ref|ZP_07017008.1| Peptidase S24/S26A/S26B, conserved region [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511041|gb|EFI34944.1| Peptidase S24/S26A/S26B, conserved region [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 144

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            +      +  +   Q      +    SM       GDIL+++ +++      ++     
Sbjct: 37  YLDRTLDLNEYLIHNQAASFFIRVAGESMQGAGILPGDILLVDRSVEPAHNKIVVAVLD- 95

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            ++V K L  R+GR + L+  +  +    +  +    I  ++
Sbjct: 96  DEMVVKRLRYRQGRGV-LVPEHPGFRPIEITDAMEAHIWGVV 136


>gi|254361311|ref|ZP_04977453.1| S24 family peptidase [Mannheimia haemolytica PHL213]
 gi|153092812|gb|EDN73849.1| S24 family peptidase [Mannheimia haemolytica PHL213]
          Length = 242

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD-RLLIKPRTGDIVAKVLISRRGRSI 193
            +         SM P    GD L+++ +     GD  + I      +  K +       +
Sbjct: 147 KKCAVFWASGDSMYPTIDNGDQLLVDLSRNEIRGDNNIYIVQNGDSVWVKRVKLLWDG-V 205

Query: 194 DLMSLN-CCYPVDTVEMSD---IEWIARIL 219
           +L+S N   Y +  +       ++ I +++
Sbjct: 206 ELISDNREEYELIKITADQAQNLQIIGQVV 235


>gi|312137328|ref|YP_004004665.1| phage repressor [Methanothermus fervidus DSM 2088]
 gi|311225047|gb|ADP77903.1| putative phage repressor [Methanothermus fervidus DSM 2088]
          Length = 214

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 41/157 (26%)

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           S   +  I+     T    +   F +    E   +    +           +S      N
Sbjct: 28  SFHRLNIIIETNGTTSDIKISNFFINPPPPEMLHEISNYVSAAIYDPDSTVESIKENVKN 87

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                G  ++       +              SM P  + G  +I         GD ++ 
Sbjct: 88  IAEKYGYKDVNVKIISQFGEDKLPMFAIVSGDSMYPTLKNGQEIIAVKTKDFKVGDIVIA 147

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
           K     ++ K +    G  + L+S N       +   
Sbjct: 148 KHPVYGLIVKRVGKIEGDMVYLVSDNKSVKKIYLPNE 184


>gi|148978333|ref|ZP_01814838.1| putative phage repressor [Vibrionales bacterium SWAT-3]
 gi|145962492|gb|EDK27770.1| putative phage repressor [Vibrionales bacterium SWAT-3]
          Length = 236

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 50/203 (24%), Gaps = 26/203 (12%)

Query: 39  NKSKRFGIEGRNRWPST------ESIFKIL-AATNETICQLLDLPFSDGRTTEKKEKEIP 91
           N   +   EG  R            + K+L         +   L              + 
Sbjct: 30  NNWLKRKAEGNGRSMEYHLSNFGPEVRKLLIETYITDEVEKNQLLEKFENLMPSNAYGLK 89

Query: 92  LLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            L      +           G               +P       G+       +     
Sbjct: 90  PLSEFGEWAKLPVYDVHAAAGAGALVQSEYQIGVFSLPVELLLEYGL--KPEFSSVIFVD 147

Query: 144 DTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLN 199
             SM P+   GD L+++       V  G  + +      +  K L          ++S N
Sbjct: 148 GDSMEPILSDGDRLLVDIRERQHPVANG--VYVIRIDEAVYVKRLQWDIENGVYKIISDN 205

Query: 200 CCYPVDTVEMS---DIEWIARIL 219
             YP   +  +   + + I + +
Sbjct: 206 LKYPAFNINHNNGRNFKIIGKAV 228


>gi|294054768|ref|YP_003548426.1| transcriptional repressor, LexA family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614101|gb|ADE54256.1| transcriptional repressor, LexA family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 213

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 60/222 (27%), Gaps = 24/222 (10%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-ST 55
           M   +   K+I E I+    R+    +   +  K     T         + G  R     
Sbjct: 1   MRDLTDRQKEILEFIEDHEWRNGFWPSIREIQDKFEFAST-------NAVMGHLRALEKK 53

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
             + +I            D P +        E     +    +             G   
Sbjct: 54  GVLERIAGQARTFRIIRPDDPETTDVPDNASEVVEIPVMGAIAAGYPDRVESGGEIGRLQ 113

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
             +         +  +  + +    + +  SM+      GD++I+        GD +   
Sbjct: 114 VDI--------GSAGFGNRRRSFALQVRGESMVDAEIYDGDMVIIE-QRDAQDGDIVAAL 164

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
               +   K  I + G    L + N  YP     ++++    
Sbjct: 165 ID-NETTLKRFIQKPGEPPYLKAENKFYPEL-YPVNELTVQG 204


>gi|300857320|ref|YP_003782304.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300437435|gb|ADK17202.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 222

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            ++ + I        ++   LA+K G+     N+++        R  +   I K+     
Sbjct: 2   NRVGQKIKLARTEMGISQKQLAKKLGVSEKFINEAESG-----KRIVNQNIIDKLSKILG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPL-----LYFPPSGSGGF----FDSGVFPTGNKWNT 117
           ++I  +      +    ++  K  P+     +    S + G          +        
Sbjct: 57  KSINDITMSFEEEVYKEDRTPKSSPITKKEKVQDVWSEAFGSVLKKVPIYKYDMRTVVGF 116

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPR 176
             +P I +   G    Q +    + +   M     ++GD++ ++S  ++       +   
Sbjct: 117 RQLPLIDNKIEGY--AQDKVMYVQVESDDMEGFRIQRGDLVFVHSTGEIYNNSI-YLVEY 173

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +G    + +       + L+S       +T+E+  ++ IA+
Sbjct: 174 SGKRELRQIKKLDSNKVLLISSRSGIRTETIEIKSLKIIAK 214


>gi|13477014|ref|NP_108584.1| repressor protein C [Mesorhizobium loti MAFF303099]
 gi|14027777|dbj|BAB54370.1| repressor protein C [Mesorhizobium loti MAFF303099]
          Length = 246

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 60/227 (26%), Gaps = 19/227 (8%)

Query: 10  WEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK----ILAA 64
            + +    E+   +  +  A   G+  ++F   +    E        E   +      A 
Sbjct: 17  GDRLRAAREKAGYSSAAKAAAALGISASTFRAHENGQNEFGPVE--AERYARRFGTSAAH 74

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---P 121
                   ++      R +  K        +      G         G       +    
Sbjct: 75  LLTGATATVERLPIPERESLPKPNASFPPRYEQFPQVGTIPVLGQSVGGPNGRFVLNGQE 134

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI- 180
             R     +          +   TSM P Y  G+ + +N    V  GD ++++    D  
Sbjct: 135 AGRVFCPPMLENVEGAYAVRVYGTSMEPRYFAGETIWINPHEPVRSGDFVVVQVVGDDDD 194

Query: 181 -----VAKVLISRRGRSIDLMSLNCCY---PVDTVEMSDIEWIARIL 219
                  K  +SR    + L  LN               +  + +I+
Sbjct: 195 DTRDSYIKQFMSRSNSLVRLRQLNPDEGENETLDFPTKRVFSVHKIV 241


>gi|237728500|ref|ZP_04558981.1| UV protection and mutation protein [Citrobacter sp. 30_2]
 gi|226909978|gb|EEH95896.1| UV protection and mutation protein [Citrobacter sp. 30_2]
          Length = 138

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLY 151
               S G F   V P    + +V    V E    +  +    +     +   +SM     
Sbjct: 6   VTQQSPGQFPLFVEPVSAGFPSVASDYVDEFIDLNTHLIKHPSATYFLRVTGSSMVEARI 65

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMS 210
            +GD++I++S+++   GD ++     GD   K L      +  L+ +N       + E  
Sbjct: 66  HEGDLVIVDSSLEAKEGDIVI-ATVDGDFTIKRLQLSPAPA--LLPMNSRMSPIYLKEGE 122

Query: 211 DIEWIARI 218
           ++     +
Sbjct: 123 ELAIFGVV 130


>gi|114567063|ref|YP_754217.1| XRE family transcriptional regulator [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
 gi|114337998|gb|ABI68846.1| putative transcriptional regulator, XRE family [Syntrophomonas
          wolfei subsp. wolfei str. Goettingen]
          Length = 359

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I+++ +  N++ + LA +AGL   + ++ +        R PS ES+ K+ +A    
Sbjct: 3  ISERINKLRKERNMSQALLAERAGLKAPAISQYESGA-----RSPSFESLIKLSSALGVP 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
             LL    +             +++    
Sbjct: 58 SDYLLLGEEAAPYEESSDSLSRMIMHISGM 87


>gi|302342291|ref|YP_003806820.1| LexA family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301638904|gb|ADK84226.1| transcriptional repressor, LexA family [Desulfarculus baarsii DSM
           2075]
          Length = 203

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 3/127 (2%)

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
           + + + ++       GG    G    G         +     +  Y         + +  
Sbjct: 63  RPRALEVIGARKRAHGGIPMLGRIAAGQPIMAAEEADEFVDIDPAYFGSGAFFALRVRGE 122

Query: 146 SML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
           SM+      GD++IL S      G  ++      ++  K         ++L + N     
Sbjct: 123 SMIGDHIADGDMVILRSQTTAQPGQ-VVAAMIDDEVTLKHYHP-GADVLELRATNPAVAN 180

Query: 205 DTVEMSD 211
             V   D
Sbjct: 181 IRVGRGD 187


>gi|159026334|emb|CAO86423.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 191

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 5/164 (3%)

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
             PS   + + +   +    Q            +  E +   L        G    G   
Sbjct: 14  HAPSIRQMMRAMNLRSPAPIQSRLERLRAKGYIDWTEGKARTLRILKQPVQGLPVLGAIA 73

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNS---AIQVN 166
            G         E +   + +          +    SM       GD++I+ S      V+
Sbjct: 74  AGGLVEPFTDVEEKLDLSNLLQRSQDCYALRVSGDSMIEDHIADGDLVIMRSLTGNEGVS 133

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            G+ +  +        K    + G  I L   N  Y   T    
Sbjct: 134 NGEIVAARVEGHGTTLKRFY-QEGEIITLQPSNQKYQPITANTE 176


>gi|148981491|ref|ZP_01816431.1| LexA repressor [Vibrionales bacterium SWAT-3]
 gi|145960846|gb|EDK26178.1| LexA repressor [Vibrionales bacterium SWAT-3]
          Length = 206

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 62/215 (28%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++ + I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVLDLIKGKIEDSGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KEAIEIIPGASRGIRILLEDAANEEQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E+    +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVEMHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G ++ L + N  +    V++ 
Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFSPIRVDLE 186


>gi|91227491|ref|ZP_01261828.1| LexA repressor [Vibrio alginolyticus 12G01]
 gi|269968655|ref|ZP_06182652.1| LexA repressor [Vibrio alginolyticus 40B]
 gi|91188515|gb|EAS74807.1| LexA repressor [Vibrio alginolyticus 12G01]
 gi|269826742|gb|EEZ81079.1| LexA repressor [Vibrio alginolyticus 40B]
          Length = 206

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KQAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G +I L + N  +    V++
Sbjct: 153 VDDDVTVKRLERK-GSTILLHAENEEFAPIQVDL 185


>gi|89076081|ref|ZP_01162441.1| LexA repressor [Photobacterium sp. SKA34]
 gi|89048233|gb|EAR53815.1| LexA repressor [Photobacterium sp. SKA34]
          Length = 206

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 60/215 (27%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTLRQQEVFDLIKAKIDETGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                              L+        G    G    G    
Sbjct: 46  HLKALAR------------KEVLEIIPGASRGIRLLVNQEEPEEQGLPLIGRVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     + +      D   +    SM  +    GD+L ++    V+ G  + +  
Sbjct: 94  AQEHVEAHYEVDPMLFKPRADFLLRVNGMSMKNIGIMDGDLLAVHKTQDVHNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  +    + L + N  +    V++ 
Sbjct: 153 VDDDVTVKRLDKQGA-KVLLHAENEEFSPIEVDLE 186


>gi|227514054|ref|ZP_03944103.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
 gi|227087582|gb|EEI22894.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
          Length = 69

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
            +++++    V  GD  + +    +   K LI   G+   L  LN  YP+          
Sbjct: 1   MLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSV 58

Query: 215 IARILWASQ 223
           + +++ ASQ
Sbjct: 59  VGKVI-ASQ 66


>gi|294789924|ref|ZP_06755148.1| putative transcriptional regulator [Simonsiella muelleri ATCC
           29453]
 gi|294482148|gb|EFG29851.1| putative transcriptional regulator [Simonsiella muelleri ATCC
           29453]
          Length = 112

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
               +    D +MLP + +G  L ++++       ++           + + S+   S+ 
Sbjct: 22  GSLKKIVMPDNAMLPTFPQGSELTIDTSQTAIIDGKIYQIQSGERFFIRKIFSQISGSLK 81

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL-W 220
           ++  N  +    V    ++ + R++ W
Sbjct: 82  IVCDNPEFESVIVSSDSVQIVGRVIEW 108


>gi|114778581|ref|ZP_01453408.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1]
 gi|114551170|gb|EAU53730.1| putative prophage repressor [Mariprofundus ferrooxydans PV-1]
          Length = 194

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 5/167 (2%)

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             S   I           +    S  +     + ++P    P S        G  P G  
Sbjct: 23  LPSYAGIAELLGMKSRASVQQLVSRLKENGYLDNKVPRRLVPTSKFLERPLVGSAPAGFP 82

Query: 115 W-NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                 + +  S  + +    +     +    SM+      GDI+I+    +      ++
Sbjct: 83  SPAEEALGDAISIDDYLVEHPSATVLVQVDGDSMIGAGINSGDIMIVRRESRPRVDRIIV 142

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                GD   K L  +  +   L   N  Y       +D++    ++
Sbjct: 143 AIVD-GDFTIKYL-RKDKQGYFLEPANPAY-PIIRPDNDLQMYGVVV 186


>gi|261350924|ref|ZP_05976341.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288860262|gb|EFC92560.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 204

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%)

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
             ++   TSMLP  + G  +++N    V+ GD ++        + K +       I L+S
Sbjct: 109 VIYQVDGTSMLPTLQDGQNVLVNKTQDVHVGDIVVANSSEYGNIIKRVDEVNNNQIHLVS 168

Query: 198 LNCC 201
            N  
Sbjct: 169 DNKN 172


>gi|257793772|ref|ZP_05642751.1| phage repressor [Staphylococcus aureus A9781]
 gi|258420982|ref|ZP_05683913.1| repressor [Staphylococcus aureus A9719]
 gi|257787744|gb|EEV26084.1| phage repressor [Staphylococcus aureus A9781]
 gi|257842930|gb|EEV67348.1| repressor [Staphylococcus aureus A9719]
          Length = 256

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 6/119 (5%)

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNS 161
                 TG         +I          +T    D        SM P+ ++G    +  
Sbjct: 139 YIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKK 198

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +++
Sbjct: 199 EDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 255


>gi|224824355|ref|ZP_03697463.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002]
 gi|224603774|gb|EEG09949.1| peptidase S24 and S26 domain protein [Lutiella nitroferrum 2002]
          Length = 174

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 6/129 (4%)

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
             +  +   +L               FP+        +    + ++ +          + 
Sbjct: 31  PRQAFRAAEVLSETELPLYASRVPAGFPSPADD---YLEASLNLNDYLIRHPESTFFVRV 87

Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              SM       GD+L+++  ++    D ++I    G++  K L  R      L+  +  
Sbjct: 88  SGESMSGAGIFDGDMLVVDRLLRPRHRD-VVIAVVAGELTVKRLELRADGP-WLVPDHPD 145

Query: 202 YPVDTVEMS 210
           YP       
Sbjct: 146 YPALRANPE 154


>gi|222444537|ref|ZP_03607052.1| hypothetical protein METSMIALI_00149 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434102|gb|EEE41267.1| hypothetical protein METSMIALI_00149 [Methanobrevibacter smithii
           DSM 2375]
          Length = 207

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%)

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
             ++   TSMLP  + G  +++N    V+ GD ++        + K +       I L+S
Sbjct: 112 VIYQVDGTSMLPTLQDGQNVLVNKTQDVHVGDIVVANSSEYGNIIKRVDEVNNNQIHLVS 171

Query: 198 LNCC 201
            N  
Sbjct: 172 DNKN 175


>gi|148642292|ref|YP_001272805.1| signal peptidase I [Methanobrevibacter smithii ATCC 35061]
 gi|148551309|gb|ABQ86437.1| signal peptidase I [Methanobrevibacter smithii ATCC 35061]
          Length = 204

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%)

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
             ++   TSMLP  + G  +++N    V+ GD ++        + K +       I L+S
Sbjct: 109 VIYQVDGTSMLPTLQDGQNVLVNKTQDVHVGDIVVANSSEYGNIIKRVDEVNNNQIHLVS 168

Query: 198 LNCC 201
            N  
Sbjct: 169 DNKN 172


>gi|110798931|ref|YP_697253.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110673578|gb|ABG82565.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
          Length = 223

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I    ++  +T   LA+K G+     N+ +           S   + K+L     
Sbjct: 3   RVGERIKEARQKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLIS--KVSKVLNTDLN 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------GGFFDSGVFPTGNKWNTV 118
            I  ++           +K+                                    +  +
Sbjct: 61  DINMVVTDEELQKELKAEKQVRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL 120

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                +   +       +    K ++  M     ++ D+ +  S  ++      L++   
Sbjct: 121 ATASNKIDGHTA----NKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFN- 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           G  V + +         L+S N     +T  + +I+ IA+
Sbjct: 176 GKRVIRQIKKLDNVKALLISNNGSMRTETANIKEIKAIAK 215


>gi|220921966|ref|YP_002497267.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219946572|gb|ACL56964.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 227

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/179 (10%), Positives = 41/179 (22%), Gaps = 6/179 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE-----SIFKILA 63
           I   +     R  +T   LA  A +  T+ +K +R   +     P         I ++  
Sbjct: 4   IGNNVRNARLRLGMTQEQLAEAANVSQTTIDKIERGLTKRSKYLPWIAIALSVDISELDN 63

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-E 122
           +   +  +                                           +  +     
Sbjct: 64  SLRYSPTEKEKDVGEVVSRPHLLAFRPGKNEQGTGNDSIPVYIATEAGNGGFLKIDFSNV 123

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             +                    +M P    GD+   ++ + V  G  +L +     + 
Sbjct: 124 DYALRPRNLDNSPSAYGLYIAGGTMHPELSPGDMAFFDTRLPVIVGSTVLFQRDDDVVT 182


>gi|192359942|ref|YP_001982170.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107]
 gi|190686107|gb|ACE83785.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107]
          Length = 201

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 14/174 (8%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           SH  +   +  + E HNL+   LA++AG+  +S +  ++  +      PS +S+ +IL A
Sbjct: 15  SHMDLGRKLKAIREAHNLSQRELAKRAGITNSSISMIEQGQV-----SPSVQSLERILTA 69

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNKWNTVGVPEI 123
              ++ +                + + L        +                       
Sbjct: 70  FPLSLAEFFSPGGILPAPVLITRQLLELQQDNQVYGATIQHLVNGIDKPELDMQRIFLPP 129

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            +     YA     +         L        +I+     +  GD + ++   
Sbjct: 130 GTRSALAYARVGDVSAVLLDGYITL----YCGEVIM----SLQPGDGVYLRRGH 175


>gi|148358333|ref|YP_001249540.1| hypothetical protein LPC_0196 [Legionella pneumophila str. Corby]
 gi|296105684|ref|YP_003617384.1| hypothetical protein lpa_00264 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280106|gb|ABQ54194.1| hypothetical protein LPC_0196 [Legionella pneumophila str. Corby]
 gi|295647585|gb|ADG23432.1| hypothetical protein lpa_00264 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 217

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 23/200 (11%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           L+P+ LAR+ G+      +     +      P   ++ +I    + TI QLL L     +
Sbjct: 28  LSPAALARQLGIPTNKITRILNGDVT----DPKASTLLQIANYFDITIEQLLGLEPIARQ 83

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
              ++++    L           +         +  V              I  +     
Sbjct: 84  EEIEQQQATRQLPIFEFSKVNQSN----AAKEWYRWVENE-----------IAGEYYALA 128

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV--AKVLISRRGRSIDLMSLN 199
                  P + K  ILI+N+ I+      +LIK +        K  +   G  I L  +N
Sbjct: 129 IDTDLYEPTFPKNSILIINTDIEPEDRSYILIKKKNDPSYCSIKKYV-LEGNQIYLYPIN 187

Query: 200 CCYPVDTVEMSDIEWIARIL 219
              PV+  +   +  IA ++
Sbjct: 188 PKLPVEIFD-DHLYTIAGVI 206


>gi|307546683|ref|YP_003899162.1| hypothetical protein HELO_4093 [Halomonas elongata DSM 2581]
 gi|307218707|emb|CBV43977.1| hypothetical protein HELO_4093 [Halomonas elongata DSM 2581]
          Length = 147

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLL 172
             + +        H  +    +     + +  SM+      GD+LI++ +++   GD ++
Sbjct: 33  ADDYLETELDLVDH--LVQHPSATFYVRAKGESMMRHGIYDGDLLIVDRSLEPRNGDVII 90

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           I    G++  K L    GR   L+S N  +    +E  +      +
Sbjct: 91  IAVD-GELTCKQLDLI-GRRPYLVSGNSAFTPIPLEGRECHVWGVV 134


>gi|170725490|ref|YP_001759516.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908]
 gi|169810837|gb|ACA85421.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC
           51908]
          Length = 182

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DIGASLKAVRKIKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++     +  +     +   +   LL               +P           P     
Sbjct: 57  SLVDFFSMEDTAASEAKVVYRSDELLDIGDGNLDYKLVGRDYPNRAMSVMSETYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++     + 
Sbjct: 117 GEEMLKHEGEEAAIVIEG 134


>gi|23465571|ref|NP_696174.1| hypothetical protein BL1002 [Bifidobacterium longum NCC2705]
 gi|189439618|ref|YP_001954699.1| SOS-response transcriptional repressor [Bifidobacterium longum
           DJO10A]
 gi|227546168|ref|ZP_03976217.1| SOS mutagenesis protein UmuD [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239621790|ref|ZP_04664821.1| peptidase S24 [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312133017|ref|YP_004000356.1| lexa2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481879|ref|ZP_07940906.1| peptidase S24-like protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688821|ref|YP_004208555.1| hypothetical protein BLIF_0634 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|23326237|gb|AAN24810.1| hypothetical protein with similarity to ImpA of Salmonella involved
           in UV protection and mutation [Bifidobacterium longum
           NCC2705]
 gi|189428053|gb|ACD98201.1| SOS-response transcriptional repressor [Bifidobacterium longum
           DJO10A]
 gi|227213149|gb|EEI81021.1| SOS mutagenesis protein UmuD [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514981|gb|EEQ54848.1| peptidase S24 [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|291517117|emb|CBK70733.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Bifidobacterium longum subsp. longum
           F8]
 gi|311774004|gb|ADQ03492.1| LexA2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916670|gb|EFV38065.1| peptidase S24-like protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460157|dbj|BAJ70777.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 128

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 130 IYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
             A +      +    SM+      GD+LI++ ++    GD ++      +I  K L+SR
Sbjct: 9   AMAHEATLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGD-VVAAVMDDEIAIKRLVSR 67

Query: 189 RGRSIDLMSLNCCYPVD 205
            G +I L + N  YP  
Sbjct: 68  AGITI-LHAENPRYPDY 83


>gi|90581416|ref|ZP_01237211.1| LexA repressor [Vibrio angustum S14]
 gi|90437393|gb|EAS62589.1| LexA repressor [Vibrio angustum S14]
          Length = 206

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 60/215 (27%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTLRQQEVFDLIKAKIDETGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                              L+        G    G    G    
Sbjct: 46  HLKALAR------------KEVLEIIPGASRGIRLLVNQEEPEEQGLPLIGRVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     + +      D   +    SM  +    GD+L ++    V+ G  + +  
Sbjct: 94  AQEHVEAHYEVDPMLFKPRADFLLRVNGMSMKNIGIMDGDLLAVHKTQDVHNGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  +    + L + N  +    V++ 
Sbjct: 153 VDDDVTVKRLDKQGA-KVLLHAENEEFSPIEVDLE 186


>gi|323492937|ref|ZP_08098077.1| LexA repressor [Vibrio brasiliensis LMG 20546]
 gi|323312830|gb|EGA65954.1| LexA repressor [Vibrio brasiliensis LMG 20546]
          Length = 206

 Score = 59.0 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KQAIEIIPGASRGIRILLEDAANDDQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVETHYQVDPSMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G ++ L + N  +    V++
Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFEPIKVDL 185


>gi|323494354|ref|ZP_08099466.1| DNA-binding protein [Vibrio brasiliensis LMG 20546]
 gi|323311517|gb|EGA64669.1| DNA-binding protein [Vibrio brasiliensis LMG 20546]
          Length = 182

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 59/195 (30%), Gaps = 22/195 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I      + E+  L+   LA++AG+     ++ +   +      PS  S+ K+L+    
Sbjct: 4   EIGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAV-----SPSVASLSKLLSKIPT 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +   +          +++E P +     S        G    G    T  +      
Sbjct: 59  SMAEFFAIDDPQPEQFYTRKEEQPEIGQGEISYRQVGHFHGDRHIGMLRET--LKPNADT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVL 185
              +   + Q+     Q             L ++   + ++ GD                
Sbjct: 117 GEEMLTHEGQECGVIVQGQLE---------LTVDLQTVTLHVGDGYYFDSTRPH----RF 163

Query: 186 ISRRGRSIDLMSLNC 200
            +       ++S N 
Sbjct: 164 RNTAEEECVIISANS 178


>gi|332098137|gb|EGJ03110.1| protein umuD [Shigella dysenteriae 155-74]
          Length = 79

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              GD+LI++SAI  + GD ++     G+   K L  R   ++ L+ +N  Y   T+   
Sbjct: 6   ISDGDLLIVDSAITASHGDIVIAAVD-GEFTVKKLQLRP--TVQLIPMNSAYSPITISSE 62

Query: 211 D-IEWIARIL 219
           D ++    ++
Sbjct: 63  DTLDVFGVVI 72


>gi|325983090|ref|YP_004295492.1| peptidase S24/S26A/S26B, conserved region [Nitrosomonas sp. AL212]
 gi|325532609|gb|ADZ27330.1| Peptidase S24/S26A/S26B, conserved region [Nitrosomonas sp. AL212]
          Length = 206

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 7/109 (6%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V   +       +            +  SM+ +     D ++++     + GD +L
Sbjct: 93  ADDHVE--KRLDVSEFLIDHAASTFFVTIRGESMIDVGLLPDDKVVVDRCKTPSHGDIVL 150

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS-DIEWIARI 218
                 +   K+L     +   LM  N    Y    +      E    +
Sbjct: 151 AVVDR-EFTIKILDYGANKMPRLMPANSTGAYRPIYIRPDTQFEIFGVV 198


>gi|312887770|ref|ZP_07747358.1| Peptidase S24/S26A/S26B, conserved region [Mucilaginibacter paludis
           DSM 18603]
 gi|311299756|gb|EFQ76837.1| Peptidase S24/S26A/S26B, conserved region [Mucilaginibacter paludis
           DSM 18603]
          Length = 152

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + +   +  S  +   +        + +  S+  +   +GDI++++ +++    D ++
Sbjct: 33  ADDYLE--DAISLDDICVSNPASTFLGRVKGQSLRDICIYEGDIVVIDKSLEPEHRDLVV 90

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARILWASQ 223
                G+  AK+L     + I L+S N  +    + +++D      + +  Q
Sbjct: 91  CAID-GEFNAKILHLDALQGIRLLSANPGFQPIVIHDLTDFRVWGVVTYIIQ 141


>gi|269119772|ref|YP_003307949.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC
           33386]
 gi|268613650|gb|ACZ08018.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC
           33386]
          Length = 229

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 18/222 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +++  +   ++ + LA   G+ P   +         R      E  + I     E  
Sbjct: 5   GEILEKYLKGR-MSMTDLAGLLGITPQYISSVLNNTK--RPSKNFLEKFYMIFDVMEEDK 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-----VGVP-EI 123
             + +           +++ + L       +        FP      +       +  E 
Sbjct: 62  ENIENYEEFRRLPENFQKEYLKLKEKNSKNTPKGSGILKFPLKAIVESGLGLLNELEKEE 121

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGD 179
                   ++       K     + P +   D+L+++        +      ++K    +
Sbjct: 122 YISIPETDSVSENSFFIKIYGNELEPEFINKDMLLMDPESCGELYLMNNKICVLKHN-NE 180

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI---ARI 218
           +  + +   +   + L  +N       +   +IE I    R+
Sbjct: 181 LFLRRVEYFK-EVVILRCINNKLNPIVITGENIEKIQCTGRV 221


>gi|302135318|ref|ZP_07261308.1| repressor protein c2, putative [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 129

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 10/127 (7%)

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGD 155
              +        G     V            Y  +      +    SM         +G 
Sbjct: 1   MYRYPVVSSVAAGAWAEAVEDGFSDRYETSDYKAKGPAFWLEVVGDSMTAPSGTSVPEGM 60

Query: 156 ILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           ++++++ ++   G  ++   P + D   K LI      + L  LN  Y +      D + 
Sbjct: 61  LILVDTGVEARPGKLVVAKLPSSNDATFKKLI-DDAGQLYLKPLNPGYSMIKCS-DDCKI 118

Query: 215 IA---RI 218
           I    R+
Sbjct: 119 IGVAVRV 125


>gi|27311229|ref|NP_758899.1| ORF6 [Vibrio phage VHML]
 gi|26891749|gb|AAN12361.1| ORF6 [Vibrio phage VHML]
          Length = 226

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 14/223 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAG--LDPTSFNKSKRFGIEGRNRWPSTESIF 59
                  I   + R+     LT   L+R     + P++ ++ +  G     +  +T    
Sbjct: 5   KRMIEIDIGPVLKRIRYERGLTLQKLSRLTDDKVLPSNISRIESAGAGATLKTLTT---- 60

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTV 118
            +  A   +   +L       +   K ++ + +       +G + +S   P  G+    V
Sbjct: 61  -LANALGTSPSDILREAEGGDKVITKPQQVLYVPVLSWVQAGTWTESPEQPADGDYDEWV 119

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             P         +  +    +      S+        +   N  I       LL+  +T 
Sbjct: 120 EAPRGAPGRLSAFEFKGIGMQAPI-GKSLPGRMLHSCLTQPNKQITAR---LLLLAWQTQ 175

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220
           +      +   G    L  LN  Y    V  S++     +L W
Sbjct: 176 ESTRSEQLIIDGPHQYLKPLNPSYRTIEVN-SEVHVCGVVLAW 217


>gi|212636884|ref|YP_002313409.1| helix-turn-helix domain-containing protein [Shewanella
           piezotolerans WP3]
 gi|212558368|gb|ACJ30822.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3]
          Length = 182

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DIGASLKTVRKEKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGLPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++ +   +        +   +   LL               FP           P     
Sbjct: 57  SLVEFFSIEDETVSEQKVVYRSDELLDIGDGVLDFKLIGRDFPNRAMSVMSETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + Q+     + 
Sbjct: 117 GIEMLKHEGQEAAMVIEG 134


>gi|156318637|ref|XP_001618084.1| hypothetical protein NEMVEDRAFT_v1g9678 [Nematostella vectensis]
 gi|156197349|gb|EDO25984.1| predicted protein [Nematostella vectensis]
          Length = 69

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      K    SM+       D+L+++ +I        +     G+   K L       
Sbjct: 2   KEATFFAKVSGQSMIGAGLDDNDLLVIDRSIPPTNNKIAVCFLD-GEFTVKRL-RVENDE 59

Query: 193 IDLMSLNCCY 202
           + L   N  Y
Sbjct: 60  VWLQPENPNY 69


>gi|160890216|ref|ZP_02071219.1| hypothetical protein BACUNI_02656 [Bacteroides uniformis ATCC 8492]
 gi|156859948|gb|EDO53379.1| hypothetical protein BACUNI_02656 [Bacteroides uniformis ATCC 8492]
          Length = 233

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 26/223 (11%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           + E+  L P+     +GL     N           R P+ E I K     N         
Sbjct: 10  LIEKEGLNPNQFYTISGLGNGYLNNV-----GESFRKPTIEKIKKSFPHWNMDWILYEKG 64

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ- 134
                 + E  E    +             +     G          I +     + I  
Sbjct: 65  EPISNISKENIEILEAIPLNQNYIINVPLVNQYAQAGYLCGFQDAAYIATLPTIPFIIDH 124

Query: 135 ---TQDTRHKTQDTSM----LPLYRKGDILILNSAIQ---------VNCGDRLLIKPRTG 178
                    + +  SM       Y +GD L+               +   D +++     
Sbjct: 125 EAKGNYVAFEVRGDSMNDGTEESYLEGDRLLCREIAPYLWAESKLHIRKWDFVIV--HED 182

Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            I+ K +   +    +I + SLN  YP   ++++++  I  ++
Sbjct: 183 GILVKRIIDHNVENHTITIHSLNDMYPDRVIDLAEVRQIFNVI 225


>gi|298251517|ref|ZP_06975320.1| Peptidase S24/S26A/S26B, conserved region [Ktedonobacter racemifer
           DSM 44963]
 gi|297546109|gb|EFH79977.1| Peptidase S24/S26A/S26B, conserved region [Ktedonobacter racemifer
           DSM 44963]
          Length = 164

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 12/108 (11%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                     ++ +            +  SM  +     D+++++ A+Q   G+ ++   
Sbjct: 36  ERWRERSLDLNDLLQMHPEATFFMLVRGESMKGVGIYDRDLVVVDRALQATHGNIIIALV 95

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI---LW 220
             G    K L      S++L S +  +P   +         R+   +W
Sbjct: 96  N-GGFSIKQLRILSDGSMELASAHPRFPPLVITP-------RVSFEVW 135


>gi|226362101|ref|YP_002779879.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226240586|dbj|BAH50934.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 186

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 9/140 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  M +   LT + L+   GL P   ++ +R         PS  ++ ++    +  
Sbjct: 4   VGNKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLAN-----PSFTTLAQLAHGLDIP 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----WNTVGVPEIR 124
           + +             +K +   L+       G      + P           +  P   
Sbjct: 59  VGRFFIGQPDTTSPVVRKHERRNLVGVTKKSMGEAVYELLTPEQGGGALEAQWIETPPGH 118

Query: 125 SPHNGIYAIQTQDTRHKTQD 144
                 +    ++       
Sbjct: 119 DTSATPFRHSGEEFGIIISG 138


>gi|213692631|ref|YP_002323217.1| putative prophage repressor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213524092|gb|ACJ52839.1| putative prophage repressor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 128

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      +    SM+      GD+LI++ ++    GD ++      +I  K L+SR   +
Sbjct: 13  EATLFVMQMAGDSMINAGIHNGDLLIVDRSLTPVPGD-VVAAVMDDEIAIKRLVSRASTT 71

Query: 193 IDLMSLNCCYPVD 205
           I L + N  YP  
Sbjct: 72  I-LHAENPRYPDY 83


>gi|28899719|ref|NP_799324.1| LexA repressor [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361671|ref|ZP_05774698.1| repressor LexA [Vibrio parahaemolyticus K5030]
 gi|260879367|ref|ZP_05891722.1| repressor LexA [Vibrio parahaemolyticus AN-5034]
 gi|260897194|ref|ZP_05905690.1| repressor LexA [Vibrio parahaemolyticus Peru-466]
 gi|260899147|ref|ZP_05907542.1| repressor LexA [Vibrio parahaemolyticus AQ4037]
 gi|31076752|sp|Q87KN2|LEXA_VIBPA RecName: Full=LexA repressor
 gi|28807971|dbj|BAC61208.1| LexA repressor [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089330|gb|EFO39025.1| repressor LexA [Vibrio parahaemolyticus Peru-466]
 gi|308092835|gb|EFO42530.1| repressor LexA [Vibrio parahaemolyticus AN-5034]
 gi|308107501|gb|EFO45041.1| repressor LexA [Vibrio parahaemolyticus AQ4037]
 gi|308111297|gb|EFO48837.1| repressor LexA [Vibrio parahaemolyticus K5030]
 gi|328472453|gb|EGF43319.1| LexA repressor [Vibrio parahaemolyticus 10329]
          Length = 206

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KQAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G ++ L + N  +    V++
Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFAPIQVDL 185


>gi|330721314|gb|EGG99396.1| Error-prone repair protein UmuD [gamma proteobacterium IMCC2047]
          Length = 144

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
            +     P G      + +   +    +  +    +     +   +SM  +     D+LI
Sbjct: 18  PYFISQVPAGFPSPADDYMD--KKLDLNEHLIQHPSATFYCRVSGSSMTAVGIFDDDLLI 75

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIAR 217
           ++ A++   GD +++    G +  K+L  R  +   L+  N  YP   + E +D E    
Sbjct: 76  VDRALKPRQGD-VVLAFVNGGLACKILDIRGKQ---LLPANDQYPPIPIREGTDFEVEGV 131

Query: 218 IL 219
           ++
Sbjct: 132 VI 133


>gi|323517754|gb|ADX92135.1| putative repressor protein from bacteriophage [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 246

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 27/218 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+I   ++R+ +   +T + LA      P      +R       R  S    FK+    N
Sbjct: 20  KQIHPTMERVYQVTKITGADLAYALDETPQIVYNWER-------RGISKTGAFKVSNKFN 72

Query: 67  ETICQLLDLPFSDGRTTEKKEK---------EIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             +  +L    S    + + +K          +P+  +   G  G++    +        
Sbjct: 73  IDVGWILTGKGSPSIDSVRNKKITTDTKRGGWVPVKSYSKMGMDGYYTEMGYLGNGGDGY 132

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           V                      +    SM P  R G  ++ +   +    + + ++ + 
Sbjct: 133 VP----------SLTAGPNAYAVRGTGDSMYPAIRNGWYVVCDPDAEPTPTEFVEVQLKD 182

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           G    K  I      + L+++N      T++M D+  I
Sbjct: 183 GRRTIKEFIGIVNNVLHLLAVNGE-ARMTIDMEDVSAI 219


>gi|331646999|ref|ZP_08348098.1| protein SamB [Escherichia coli M605]
 gi|331044316|gb|EGI16447.1| protein SamB [Escherichia coli M605]
          Length = 297

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 7/110 (6%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKG 154
             +          FP+        + E    +             +    SM  +    G
Sbjct: 14  STAPLFTERCPAGFPSPAAD---YMEEELDLNTYCIRHPASTFFVRAIGDSMKDMGLHSG 70

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
           D++I++ A +   GD ++ +   G+   K L  +    + L+ +N   P 
Sbjct: 71  DLMIVDKAEKPQQGDIVIAETD-GEFTVKRLQLKP--RVALLPMNPVSPP 117


>gi|317480198|ref|ZP_07939306.1| peptidase S24-like protein [Bacteroides sp. 4_1_36]
 gi|316903636|gb|EFV25482.1| peptidase S24-like protein [Bacteroides sp. 4_1_36]
          Length = 227

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 26/223 (11%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           + E+  L P+     +GL     N           R P+ E I K     N         
Sbjct: 4   LIEKEGLNPNQFYTISGLGNGYLNNV-----GESFRKPTIEKIKKSFPHWNMDWILYEKG 58

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ- 134
                 + E  E    +             +     G          I +     + I  
Sbjct: 59  EPISNISKENIEILEAIPLNQNYIINVPLVNQYAQAGYLCGFQDAAYIATLPTIPFIIDH 118

Query: 135 ---TQDTRHKTQDTSM----LPLYRKGDILILNSAIQ---------VNCGDRLLIKPRTG 178
                    + +  SM       Y +GD L+               +   D +++     
Sbjct: 119 EAKGNYVAFEVRGDSMNDGTEESYLEGDRLLCREIAPYLWAESKLHIRKWDFVIV--HED 176

Query: 179 DIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            I+ K +   +    +I + SLN  YP   ++++++  I  ++
Sbjct: 177 GILVKRIIDHNVENHTITIHSLNDMYPDRVIDLAEVRQIFNVI 219


>gi|332661789|ref|YP_004451259.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100]
 gi|332337286|gb|AEE54386.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 167

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 8/138 (5%)

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
           +      +                P G      + V   E  +    +          + 
Sbjct: 24  EADTRVPVIEISHIHSNLPYFQSVPAGFPSPADDYVE--EKLNLDKYLIKNPAATFFVRV 81

Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              SM        DILI++ ++     D ++     G    K L+        L   N  
Sbjct: 82  SGDSMTGAGIYPEDILIVDRSLSAKTDDVIIALLD-GAFTVKRLVY-EQGRYWLKPENPQ 139

Query: 202 YPVDTVEMSDIEWIARIL 219
             +  V       +  ++
Sbjct: 140 LALIEVMAESEFLVWGVV 157


>gi|313200830|ref|YP_004039488.1| peptidase s24 and s26 domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440146|gb|ADQ84252.1| peptidase S24 and S26 domain protein [Methylovorus sp. MP688]
          Length = 80

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
             +G  L+++ +I+      ++     G+++ K L  R    + L+S N  Y    +   
Sbjct: 6   IFEGSTLVVDRSIKAKSSSIVV-AMVEGELMVKRLYKRGA-VVKLLSDNPAYAPIALTEG 63

Query: 211 DIEWIARIL 219
               I  ++
Sbjct: 64  QELIIWGVV 72


>gi|226951294|ref|ZP_03821758.1| UmuD family protein [Acinetobacter sp. ATCC 27244]
 gi|226837967|gb|EEH70350.1| UmuD family protein [Acinetobacter sp. ATCC 27244]
          Length = 161

 Score = 58.6 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  + + +      K    SM        D LI++ ++     D ++      D   
Sbjct: 58  IDMNEHLISNECATFIVKVGSLSMKNAGIDIDDELIVDRSLDAKHDDIVVALID-NDFTV 116

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L   + R+  L + N  Y    ++      I  ++
Sbjct: 117 KRLKIEQHRT-WLKAENPDYDDIHLKDGQQLIIWGVV 152


>gi|253995835|ref|YP_003047899.1| peptidase S24 and S26 domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253982514|gb|ACT47372.1| peptidase S24 and S26 domain protein [Methylotenera mobilis JLW8]
          Length = 205

 Score = 58.6 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
              + +   P+  +   +        Q  SM+ +    GD  +++ A   + GD +L   
Sbjct: 93  EDHLEQRLDPNEFLIDKKDTTFFVTIQGYSMVDVGLLPGDKAVVDRAKIASIGDIVLAVI 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNC--CYPVDTVEMS 210
             G+   K L   +  ++ L+  N    Y    +   
Sbjct: 153 D-GEFTIKTLSRSKEGNVRLLPANSSADYAPINITEE 188


>gi|324120120|ref|YP_004249881.1| hypothetical protein pc15-k-030 [Klebsiella pneumoniae]
 gi|323388248|gb|ADX60397.1| hypothetical protein pc15-k-030 [Klebsiella pneumoniae]
          Length = 224

 Score = 58.6 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 7/155 (4%)

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           T      +    F  G  T K    +                  FP+             
Sbjct: 65  TGLPAHTVYIYSFKRGENTMKFIPAVSEASIVKIPLFTERCPAGFPSPAAD---YTESEL 121

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
             +      +      +    SM  +    GD+++++ A Q   GD ++     G+   K
Sbjct: 122 DLNEYCIHRRHSTYFVRAIGNSMTDIGLYSGDLMVVDKAEQPRHGDIVI-AEIEGEFTVK 180

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            L+        L ++N  +P    +   ++    +
Sbjct: 181 RLLLTP--RPALQAMNPDFPSLYPDPETLQIFGVV 213


>gi|90414172|ref|ZP_01222153.1| hypothetical protein P3TCK_08893 [Photobacterium profundum 3TCK]
 gi|90324722|gb|EAS41260.1| hypothetical protein P3TCK_08893 [Photobacterium profundum 3TCK]
          Length = 128

 Score = 58.6 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E       +          +    SM+      GD+L+++ A Q   G R++I     + 
Sbjct: 24  EQLELDEYLIRNPNATFLLRASGESMIGAGIFDGDLLVVDRAEQAVAG-RVVIVRIYDEF 82

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K L+     +  L + N  +    +   D E    +
Sbjct: 83  TCKRLMRY-NDAWWLKAENPTFRAFPIP-EDAEIFGVV 118


>gi|295115454|emb|CBL36301.1| SOS regulatory protein LexA [butyrate-producing bacterium SM4/1]
          Length = 204

 Score = 58.6 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 56/214 (26%), Gaps = 36/214 (16%)

Query: 9   IWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I   +D+    H+ +PS   +A+  G+   +  +                          
Sbjct: 12  ICTFVDQYYREHHASPSVNEIAQGVGVSKATSYRY-----------------------LV 48

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               + +         T++  K     +  P               +    V +P+    
Sbjct: 49  AMNERGMLSYDCKTIVTKQVGKCTSGYFSAPVVGSIRCGDPEREEESVEEYVSLPKSIFG 108

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                  + +    + +  SM+       D++++        GD ++      +   K  
Sbjct: 109 -------EGKFYILRAKGDSMVDAGIEDEDLIVIRIQDTAAVGDIVVALDEDNENTLKTF 161

Query: 186 --ISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIA 216
             I      + L   N   YP   + +  +    
Sbjct: 162 GGIDEENGDVILRYANQTKYPDKEIRVKQLIVQG 195


>gi|46190225|ref|ZP_00206374.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Bifidobacterium longum DJO10A]
          Length = 119

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 132 AIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           A +      +    SM+      GD+LI++ ++    GD ++      +I  K L+SR G
Sbjct: 2   AHEATLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGD-VVAAVMDDEIAIKRLVSRAG 60

Query: 191 RSIDLMSLNCCYPVD 205
            +I L + N  YP  
Sbjct: 61  ITI-LHAENPRYPDY 74


>gi|237720871|ref|ZP_04551352.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|229449706|gb|EEO55497.1| predicted protein [Bacteroides sp. 2_2_4]
          Length = 256

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 30/221 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + ID   E+++++ + L    GL   + +             PS + I   L        
Sbjct: 55  KTIDAFCEKYDVSRAWLYTGEGLFAKTPSG---------QIEPSDKDIRDALKNARM--- 102

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                          ++  + + Y P   +  F +S         +   +PE     +  
Sbjct: 103 --QSDSTISKVAPYLQDILVKVKYVPMDAAASFVESLYNTAYEIDSYGVMPEEGEVLDDS 160

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRTGDIVAKVLISR 188
           Y         + +  SM P    G  ++     +        ++       +  K ++  
Sbjct: 161 Y------MVFQVRGDSMEPTIPDGAKILARKIEEGLWESASGVVSIVYGKTLSVKRILKN 214

Query: 189 R---GRSIDLMSLNCCYPVDTVEMSDIEWIA---RILWASQ 223
                  + L + N  +    VE  +I  +    RI+  SQ
Sbjct: 215 SLFLDNVLTLKADNPKHGQLDVERREIRGMWQALRII--SQ 253


>gi|261249994|ref|ZP_05942571.1| SOS-response repressor and protease LexA [Vibrio orientalis CIP
           102891]
 gi|260939498|gb|EEX95483.1| SOS-response repressor and protease LexA [Vibrio orientalis CIP
           102891]
          Length = 206

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKNKIESTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KEAIEIIPGASRGIRILLEDAANDDEGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVETHYQVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G ++ L + N  +    V++
Sbjct: 153 VDDDVTVKRLERK-GSTVLLHAENEEFAPIKVDL 185


>gi|289807210|ref|ZP_06537839.1| SamA [Salmonella enterica subsp. enterica serovar Typhi str. AG3]
 gi|289827509|ref|ZP_06546119.1| SamA [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
          Length = 69

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            +     +    SM  +    GD+++++ A +   GD ++     G+   K L  +    
Sbjct: 1   PSSTFFVRAIGDSMRDMGLHSGDLMVVDKAEKPLQGDIVI-AETEGEFTVKRLQLKP--R 57

Query: 193 IDLMSLNCCYP 203
           I L+ +N  Y 
Sbjct: 58  IALLPMNPAYH 68


>gi|299533285|ref|ZP_07046669.1| DNA polymerase V [Comamonas testosteroni S44]
 gi|298718815|gb|EFI59788.1| DNA polymerase V [Comamonas testosteroni S44]
          Length = 140

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  +    SM       GDI++++ A++   G  ++      D   KVL    G  
Sbjct: 48  PQATFLLRVAGPSMREYGIDDGDIIVVDRALRARHGSIVVAVLD-NDFTVKVLH-NAGGC 105

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
             L + N  YP    + +    I  ++
Sbjct: 106 FKLRAGNPTYPDIVPKENQELEIWGVV 132


>gi|121533664|ref|ZP_01665491.1| putative prophage repressor [Thermosinus carboxydivorans Nor1]
 gi|121307655|gb|EAX48570.1| putative prophage repressor [Thermosinus carboxydivorans Nor1]
          Length = 66

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 3/63 (4%)

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           +I+        GD ++      +   K     R   I L   N        +   +  + 
Sbjct: 1   MIVREQNTARNGDIVVALLDGEEATVKRFYKERD-YIRLQPENNYMEPIYSQN--VTILG 57

Query: 217 RIL 219
           +++
Sbjct: 58  KVV 60


>gi|265756280|ref|ZP_06090609.1| predicted protein [Bacteroides sp. 3_1_33FAA]
 gi|263233871|gb|EEZ19480.1| predicted protein [Bacteroides sp. 3_1_33FAA]
          Length = 219

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 67/236 (28%), Gaps = 44/236 (18%)

Query: 3   SFSHKKIWEAID-------RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
             + ++  E +           E   L+   +A+K G +  S  K      +    W   
Sbjct: 1   MSTKERFVEYLKIKGIGQTAFEESAGLSRGAIAKKTGFNADSIEKIASACPDLNINWL-- 58

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                    T      +          T  K+ +I  +        GF  +     G   
Sbjct: 59  --------ITGIGNMTINTNSSITETPTTNKDIKILDIRVCAGHGIGFDGNENKVIG--- 107

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLI 173
             V +PE            T          SM  +Y  GD + +      +     +  +
Sbjct: 108 -YVNIPE-----------FTGCYGITVYGDSMYDMYMSGDTIFVREIKDKRNIDNGQPYM 155

Query: 174 KPRTGDIVAKVLISRRGRSIDLMS-----LNCC----YPVDTVEMS-DIEWIARIL 219
                D + K++     R   ++S      N      YP   +++  D+  + +++
Sbjct: 156 IITKEDRLLKMIHIDYERKKTILSSYNNIANPDGKRKYPDMEIDIDNDVIHLYKVV 211


>gi|89885828|ref|YP_516026.1| putative prophage repressor [Rhodoferax ferrireducens T118]
 gi|89347826|gb|ABD72028.1| putative prophage repressor [Rhodoferax ferrireducens T118]
          Length = 146

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  +    SM       GDIL+++ AI+   G  ++     GD   K L  +R   
Sbjct: 53  PQATYFLRASGQSMIEAGIFDGDILVVDRAIKPRHGHIVIAILD-GDFTVKQLH-QRQGR 110

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I L + N  +     +      I  ++
Sbjct: 111 IKLKAANPTFAEIVPKDGQTIEIWGVV 137


>gi|332661938|ref|YP_004451407.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100]
 gi|332337435|gb|AEE54534.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 150

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V   E  +    +          +    SM        DILI++ ++     D ++
Sbjct: 38  ADDYVE--EKLNLDKYLIKNPAATFFVRVSGDSMTGAGIYPEDILIVDRSLSAKTDDVII 95

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                G    K L+        L   N    +  V       +  ++
Sbjct: 96  ALLD-GAFTVKRLVY-EQGRYWLKPENPQLALIEVGAESEFLVWGVV 140


>gi|302877875|ref|YP_003846439.1| Peptidase S24/S26A/S26B, conserved region [Gallionella
           capsiferriformans ES-2]
 gi|302580664|gb|ADL54675.1| Peptidase S24/S26A/S26B, conserved region [Gallionella
           capsiferriformans ES-2]
          Length = 153

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLL 172
             + V   +  S    +   +      +    SM       GD+L+++ A+    G  ++
Sbjct: 44  ADDYVE--QRISLDEHLIGRRESTFFMRVAGESMRGLGIFDGDLLVVDRALPATSGCVVI 101

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL-W 220
                G+   K L+      + L + +  Y    ++      I  ++ W
Sbjct: 102 AVVD-GEFTVKQLLHTSDGPV-LRAAHPDYDDMRIQPEQDFSIWGVVSW 148


>gi|330892375|gb|EGH25036.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330894653|gb|EGH27314.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 84

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                K    SM         +++++ +   + G  ++      + + K+LI + G  + 
Sbjct: 12  HIYVAKIDGDSMEGAKIFHDSLVVVDRSRTPSSGSIVIAALN-NEPLCKILILQ-GDHVV 69

Query: 195 LMSLNCCYPVDT 206
           L S N  YP   
Sbjct: 70  LKSANPAYPPRE 81


>gi|325840878|ref|ZP_08167213.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|325490135|gb|EGC92473.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 330

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H ++   I  + +R  ++   LA + G+   + +  +R   +     P  E + K+ A  
Sbjct: 3  HHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQ-----PDLEMLMKLAAIF 57

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
             +  L+ +         +   +     +
Sbjct: 58 ETDLDGLMGIKSDIKEEPVELNLKPMKWMY 87


>gi|160888118|ref|ZP_02069121.1| hypothetical protein BACUNI_00526 [Bacteroides uniformis ATCC 8492]
 gi|270295144|ref|ZP_06201345.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478142|ref|ZP_07937317.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Bacteroides sp. 4_1_36]
 gi|156862429|gb|EDO55860.1| hypothetical protein BACUNI_00526 [Bacteroides uniformis ATCC 8492]
 gi|270274391|gb|EFA20252.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905740|gb|EFV27519.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Bacteroides sp. 4_1_36]
          Length = 240

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 66/221 (29%), Gaps = 12/221 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAAT 65
             I  A  ++A+    T S LA   G+  ++ +               S + +      T
Sbjct: 13  DIIKRA--KLAKEFK-TDSELAAFLGISRSTLSNWNARNSIDFPLLLGSLDDVDYNWLLT 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVPEIR 124
            +           +     + E         P          +    N    +   P+  
Sbjct: 70  GKGSPAHHSKFCDNDLVQGEVEILHTPKTADPMDDRSVTLYDISAAANLKTLLADRPQYA 129

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD-- 179
                I  I   D        SM P+ + GDI+    +     V  G+  L+    G   
Sbjct: 130 LGRIVIPNIPVCDGAVYVSGDSMYPILKSGDIVGFKSIRDFTDVIYGEMYLVSFERGGDE 189

Query: 180 -IVAKVL-ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            +  K +  S R   I L+S N  +    + ++ +  +A +
Sbjct: 190 YLAVKYVNHSERPDCIRLVSYNNHHDPMDLPLAAVNAMAIV 230


>gi|154503786|ref|ZP_02040846.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149]
 gi|153795886|gb|EDN78306.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149]
          Length = 262

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 66/236 (27%), Gaps = 28/236 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP-STESIFKILAATN 66
           KI   I       NL+   LA K  + P++    +      +     +  +   + A   
Sbjct: 2   KIGNQIRHRRTELNLSRGELANKIQVTPSAIANYENGVSYPKPDILVALMNALDVDANYL 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-----FFDSGVFPTGNKWNTVGVP 121
                         R     E++  +L +      G           +   N+   + +P
Sbjct: 62  YWNYLSNSTIQRLYRKVLSPEEKESILKYRELSENGKSLVRLIIDEEYKRMNQSEYINLP 121

Query: 122 E------------------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
                                      +  +  D   +       P+++K DIL L   I
Sbjct: 122 FYRPGIRKVHSGFLFQDTTQTIRVRRKHVPKDSDFCFQVLIDRYQPVFQKNDILALQR-I 180

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
             +  +          I    ++S  G    L SLN   P   V E   +E I +I
Sbjct: 181 NASHNEI--GLFWFNGIYYIRILSEEGSIRRLRSLNVIDPDIVVNEQDQLECIGKI 234


>gi|226326602|ref|ZP_03802120.1| hypothetical protein PROPEN_00452 [Proteus penneri ATCC 35198]
 gi|225205027|gb|EEG87381.1| hypothetical protein PROPEN_00452 [Proteus penneri ATCC 35198]
          Length = 83

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              GD+L ++    V+ G  ++ +    ++  K    + G  I+L + N  +    V++ 
Sbjct: 6   IMDGDLLAVHKTQDVHNGQVIVARI-EDEVTVKRF-KKSGNKIELHAENPEFSPIIVDLR 63

Query: 211 D 211
           +
Sbjct: 64  E 64


>gi|297246897|ref|ZP_06930678.1| CI-like repressor [Staphylococcus aureus A8796]
 gi|297176265|gb|EFH35551.1| CI-like repressor [Staphylococcus aureus A8796]
          Length = 256

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIY---AIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
                 TG         +I           A    D        SM P+ ++G    +  
Sbjct: 139 YIACGATGAGIGEELYDDILHEEVFFKEDEAPSNADFCILINGDSMEPMLKQGTYAFIKK 198

Query: 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
              +  G   L+    G  + K +       I+L+SLN  Y    V   S+I+ + +++
Sbjct: 199 EDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKYDDIKVASFSNIKVMGKVV 255


>gi|209696292|ref|YP_002264223.1| LexA repressor [Aliivibrio salmonicida LFI1238]
 gi|226694231|sp|B6ENU0|LEXA_ALISL RecName: Full=LexA repressor
 gi|208010246|emb|CAQ80577.1| LexA repressor [Aliivibrio salmonicida LFI1238]
          Length = 207

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 62/214 (28%), Gaps = 33/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++++E I    E   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTARQQEVFELIKAKIEDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                 +      +   I L         G    G    G    
Sbjct: 46  HLKALARK-----------QAIEIIPGASRGIRILLQDPVEPEDLGLPLIGQVAAGEPIL 94

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V+ G  + +  
Sbjct: 95  AQEHVESHYQVDPSMFKPQADFLLRVNGESMKNIGIMDGDLLAVHKTQDVHDGQVV-VAR 153

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G  + L + N  +    V++
Sbjct: 154 VDDDVTVKRLERK-GSMVFLHAENEEFAPIQVDL 186


>gi|120613182|ref|YP_972860.1| putative phage repressor [Acidovorax citrulli AAC00-1]
 gi|120591646|gb|ABM35086.1| putative phage repressor [Acidovorax citrulli AAC00-1]
          Length = 231

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 44/177 (24%), Gaps = 9/177 (5%)

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           R  S +++  I +              +  R +                           
Sbjct: 49  RAVSDKTVRHIESMRGMHAWFSQPPAPAGTRESSAAYDFDAGPEMYELFPVSLHLRPGIA 108

Query: 111 TGNKW-----NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
               W         +   R        I       + +   M P  + GDI+++N++   
Sbjct: 109 DYAIWPDETDEDAPITFHRQWLERRGYIPQCLLAIRVRGCGMEPSIQAGDIVVVNTSDTT 168

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219
               ++      G+++ +           +   N     YP       D   I R++
Sbjct: 169 LRDGQVFAINGFGEVLLRRAQRD-DGRWWISCDNPDQARYPRKAWAEPDCIPIGRLV 224


>gi|256819705|ref|YP_003140984.1| putative phage repressor [Capnocytophaga ochracea DSM 7271]
 gi|256581288|gb|ACU92423.1| putative phage repressor [Capnocytophaga ochracea DSM 7271]
          Length = 244

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 66/229 (28%), Gaps = 18/229 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +I +    + +    +   LA++  GL        +    +  +      +        +
Sbjct: 16  EINQRFIEVMKYKGYSGYKLAQEIDGLSEAKITHIRSGRNKVSSEILKLIT----NKFPD 71

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT------VGV 120
                LL    +  +     EK I       +     +     P  N   T      V  
Sbjct: 72  INPIWLLTGKETMIKGENTPEKTITSSVPIIANEVINYSEKGVPYYNVDFTNGFMGVVEF 131

Query: 121 PEIRSPHNGIYAIQTQD-TRHKTQDTSMLPLYRKGDILILNS-AIQVNC-GDRLLIKPRT 177
             I+  +   Y               SM  +   GDI+ +    +     G+   I    
Sbjct: 132 ENIKPDYYINYPPANNCDFWINATGRSMENMINHGDIVAVKEVDLSWFPLGEIYAIVTSN 191

Query: 178 GDIVAKVLISRRGRS-IDLMSLNCC---YPVDTVEMSDIEWIARILWAS 222
           G  + K +   R +    L+S N     YP   +    I  + +++ AS
Sbjct: 192 GYRLIKRITESRNKKCFRLVSENPDKDNYPDQDIPKQYITRLFKVIIAS 240


>gi|182418771|ref|ZP_02950040.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237667098|ref|ZP_04527082.1| serine peptidase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377370|gb|EDT74929.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237655446|gb|EEP53002.1| serine peptidase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 563

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 135 TQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K +  SM       GD +++N        D ++     G+   K     +G+ +
Sbjct: 472 KDLFILKIKGDSMVKKNINDGDHVLINKNKYPCAND-VVAVEIEGEATLKTF-KTKGKYV 529

Query: 194 DLMSLNCCYPVDTVEMSD 211
            L   N  Y    +    
Sbjct: 530 ILKPENDKYDPIILNGEQ 547


>gi|148257097|ref|YP_001241682.1| putative LexA repressor [Bradyrhizobium sp. BTAi1]
 gi|146409270|gb|ABQ37776.1| putative LexA repressor [Bradyrhizobium sp. BTAi1]
          Length = 206

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 44/212 (20%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I+R  E+   T  GLAR  G+ P + ++               + + K       T    
Sbjct: 7   IERALEKPGKTKGGLARAMGVRPGAVSEI-----------LGGQRLIKAAEIPLIT---- 51

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                        +   +P++    +GS    +    P       V +P         + 
Sbjct: 52  ----------EYLELNSVPIMGRVGAGSVIEPEYEQVPAE-GLGEVALP---------FP 91

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV----NCGDRLLIKPRTGDIVAKVLISR 188
           I  +    +    SMLP Y  GD++++    +       G+  +++ +TG+   K +   
Sbjct: 92  ISEETIAFEVSGDSMLPKYENGDVIVVYREQRHPLSSFYGEEAVVRLKTGERYLKTIERG 151

Query: 189 RGRSID-LMSLNCCYPVDTVEMSDIEWIARIL 219
           +  ++  L S N       +    ++WI  I 
Sbjct: 152 KSSTLVNLKSFNAK----PILGVKLDWIGEIF 179


>gi|160935455|ref|ZP_02082837.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441813|gb|EDP19513.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC
           BAA-613]
          Length = 184

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 15/176 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I ++ +   LT   +A   GL     ++ +R  +E     PS  S+ K+      +
Sbjct: 2   VGEKIRKLRKEKKLTLKDIAEATGLSIGYISQLERGAVE-----PSLSSLRKVSEFLGVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPEIRSP 126
              L+D         +  ++ I                 +  +   +      +      
Sbjct: 57  PYLLVDQSEHHPAMVKSDQRPIIKFPKSEIFYEIVSPMSAPEYTPSSMVIQFQIEPGGHD 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                   +++     Q  +        D+++  ++  +N GD L+++P       
Sbjct: 117 SEEFLTHPSEEIVILLQGEA--------DMVLGETSYHLNAGDSLVVRPNMPHRTI 164


>gi|145301000|ref|YP_001143841.1| transcriptional regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853772|gb|ABO92093.1| putative transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 180

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +  +  L+   LA+++G+     ++ ++  +      PS  S+ K+L     
Sbjct: 2   DIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQV-----SPSVSSLRKVLEGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++          G     +  ++P L   P        S           + +P      
Sbjct: 57  SLASFFTEETEMGTEVIFRASDMPDLGTHPISYRLVGHSRANRAIGMMQEI-LPPGADTG 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
           + + + + ++     Q T         ++ I     Q+  GD      RT         +
Sbjct: 116 DDMLSHEGEECGIVIQGTV--------EVTIGEQIHQLAPGDGYYFDSRTPH----RFRN 163

Query: 188 RRGRSIDLMSLN 199
              +   L+S N
Sbjct: 164 VGEQECVLISAN 175


>gi|59713049|ref|YP_205825.1| LexA repressor [Vibrio fischeri ES114]
 gi|71648705|sp|Q5E209|LEXA_VIBF1 RecName: Full=LexA repressor
 gi|59481150|gb|AAW86937.1| DNA-binding transcriptional repressor of SOS regulon [Vibrio
           fischeri ES114]
          Length = 208

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 32/214 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTARQQEVFDLIKAKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  + +           G    G    G    
Sbjct: 46  HLKALARK----------QVIEIIPGASRGIRILLQDADHHDEELGVPLIGQVAAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 96  AQEHVESHYKVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G  + L + N  +    V++
Sbjct: 155 VDDDVTVKRLERK-GSMVFLHAENEEFSPIEVDL 187


>gi|240126049|ref|ZP_04738935.1| putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae SK-92-679]
          Length = 59

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
             ++    + G    K LI + G S+ + S N   YP +T  +  +  I R+ W S
Sbjct: 1   DGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLTVIGRVFWWS 56


>gi|261253380|ref|ZP_05945953.1| DNA-binding protein [Vibrio orientalis CIP 102891]
 gi|260936771|gb|EEX92760.1| DNA-binding protein [Vibrio orientalis CIP 102891]
          Length = 182

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 58/194 (29%), Gaps = 22/194 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I      + E+  L+   LA++AG+     ++ +   +      PS  S+ K+L+    +
Sbjct: 5   IGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAV-----SPSVASLSKLLSKIPTS 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           + +   +          +++E P +     S        G    G    T  +       
Sbjct: 60  MAEFFAIDDPQPEQFYTRKEEQPEIGQGEISYRQVGHFHGDRHIGMLRET--LKPDADTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLI 186
             +   + Q+     Q             L ++   + ++ GD                 
Sbjct: 118 EEMLTHEGQECGVVVQGQLE---------LTVDLHTVTLHVGDGYYFDSTRPH----RFR 164

Query: 187 SRRGRSIDLMSLNC 200
           +       ++S N 
Sbjct: 165 NTAEEECVIISANS 178


>gi|89070253|ref|ZP_01157577.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus
           HTCC2516]
 gi|89044173|gb|EAR50331.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus
           HTCC2516]
          Length = 187

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 61/199 (30%), Gaps = 19/199 (9%)

Query: 1   MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   SH + + + +  + +   L+   LAR+ G+   + ++ +    +     PS   + 
Sbjct: 1   MAQPSHDQMVAQRLRVVRQSRGLSQRELARRTGVGSGTISQIESMATQ-----PSVAVLK 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           KIL      +        + G     +++E   +  P                   +   
Sbjct: 56  KILDGVPMDLATFFSFELALGDAPVFRKEEHVDIGAPGVAYRLVAAQRPNRALQMLHEFY 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            P  R       + + ++       +  + +   GD + +     +N GD       T  
Sbjct: 116 QP-GRDSGRRPLSHEGEECAIVVAGSLEVTV---GDEVFV-----LNRGDAYYFASSTPH 166

Query: 180 IVAKVLISRRGRSIDLMSL 198
                  +      +++S 
Sbjct: 167 ----RFRNVGDTVCEVVSA 181


>gi|73853267|ref|YP_308763.1| hypothetical protein LH0099 [Escherichia coli]
 gi|73476851|gb|AAZ76466.1| hypothetical protein LH0099 [Escherichia coli]
          Length = 145

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L  R   +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLRLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134


>gi|242280484|ref|YP_002992613.1| phage repressor [Desulfovibrio salexigens DSM 2638]
 gi|242123378|gb|ACS81074.1| putative phage repressor [Desulfovibrio salexigens DSM 2638]
          Length = 214

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 55/205 (26%), Gaps = 24/205 (11%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
            P+ +A+  G+ P    +  +     + R    + + ++L      I    D   ++   
Sbjct: 23  NPTQMAKACGVAPNQIIRYIK-----KERGKHIQVLARVLDEVGARIVFPEDKSPNNDNF 77

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
              ++                   G       W                           
Sbjct: 78  LTPQKALARANRDGEKLKVDSETQGKLAFNLDW------------MAEKGDPDSMKLLTV 125

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              +M P    G+ ++++ + +     R+       +I+ + +       I L+S N   
Sbjct: 126 TGNAMAPRIEDGNQVLVDESQKDFFEGRIYAVRIDEEILVRRVAREP-GKILLISENQEI 184

Query: 203 P--VDTV----EMSDIEWIARILWA 221
                 +       +   I R+++ 
Sbjct: 185 SPGPIVLESNNPAHNWAPIGRVVFV 209


>gi|154247615|ref|YP_001418573.1| putative phage repressor [Xanthobacter autotrophicus Py2]
 gi|154161700|gb|ABS68916.1| putative phage repressor [Xanthobacter autotrophicus Py2]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 14/213 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  +          ++   G +     +    G+ G       + +  IL   +E 
Sbjct: 8   ILDRIADL----GTDLKAVSLALGRNHAYLQQFISRGVPGELGERDRKKLAIILKVNDEH 63

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +                 ++             G+  +G     +  +            
Sbjct: 64  LRSRPVEHIDSMDVASLVDRSKKRKPDQEVRVVGYIGAG--AEVHTVDDHEKGAGLDLVQ 121

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI---QVNCGDRLLIKPRTGDIVAKVL 185
             + ++        +  SMLP++  GD++         +   G   ++K   G    K L
Sbjct: 122 VDFPVKHGTVGVIVRGDSMLPMFEDGDLIGYIRDASGPEQLIGKICVVKVVDGPTYIKRL 181

Query: 186 IS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
                     L+S N       +E  DIEW AR
Sbjct: 182 KRGTEPGLYTLVSANA----RDIEDVDIEWAAR 210


>gi|88799578|ref|ZP_01115154.1| transcriptional regulator, Cro/CI family protein [Reinekea sp.
           MED297]
 gi|88777663|gb|EAR08862.1| transcriptional regulator, Cro/CI family protein [Reinekea sp.
           MED297]
          Length = 181

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 50/167 (29%), Gaps = 14/167 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + +  + ++  ++   LA++ G+  ++ +  ++  +      PS  S+ K+L+  + 
Sbjct: 2   NVGKRLQEVRKKAGISQRELAKRVGVTNSTISMIEKNNV-----SPSVSSLQKVLSGMSM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           T+ +  +   +D    +    +        S          FP           P     
Sbjct: 57  TLLEFFEAEDNDIYVPQINYTDDDFQDVSSSQVRRRLLGQYFPNRKLEFVSETFPPGAER 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
              +                +L        ++    + +  G+    
Sbjct: 117 RIRLGVESGDKAGMVISGQLVL--------ILGERTVVLEPGNGFYF 155


>gi|312884411|ref|ZP_07744116.1| LexA repressor [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367933|gb|EFP95480.1| LexA repressor [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 206

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 63/215 (29%), Gaps = 34/215 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKCKVDETGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KQAIEIIPGASRGIRILLDTASNDDSGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V+ G  + +  
Sbjct: 94  AQEHVETHYQVDPSMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVHDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K L  + G  + L + N  +    V+++
Sbjct: 153 VDDDVTVKRLERQ-GSVVLLHAENQDFEPIKVDLA 186


>gi|269838163|ref|YP_003320391.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269787426|gb|ACZ39569.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 367

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     ++I  AI R+ +   +T   LA +AG+  +  ++ +R         PS   + K
Sbjct: 1  MQPVQRQRIGPAIRRLRQERGMTLDALAAQAGISASHLSRLERSQT-----LPSFTVLAK 55

Query: 61 ILAATNETICQL 72
          I       I + 
Sbjct: 56 IAEVLGVGIDEF 67


>gi|262043812|ref|ZP_06016906.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038840|gb|EEW40017.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 70

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +++    V  GD  + +    +   K LI   G+   L  LN  YP+          + +
Sbjct: 1   LVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGK 58

Query: 218 ILWASQ 223
           ++ ASQ
Sbjct: 59  VI-ASQ 63


>gi|325267675|ref|ZP_08134326.1| prophage MuMc02 protein [Kingella denitrificans ATCC 33394]
 gi|324980799|gb|EGC16460.1| prophage MuMc02 protein [Kingella denitrificans ATCC 33394]
          Length = 138

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                      +M P +    +++ + +  +    ++           + +       I 
Sbjct: 45  ENCGFFMADGIAMKPTFEGECLILADLSDTILKDGKIYCLEIGAHRWVRRVQVLLD-KII 103

Query: 195 LMSLNCCYPVDTVEMSD---IEWIARI--LW 220
           LM+ N  Y    +   D   +  + R+  +W
Sbjct: 104 LMADNPDYADMEISGEDLNRLNVLGRVRGVW 134


>gi|331680936|ref|ZP_08381576.1| protein ImpA [Escherichia coli H299]
 gi|331081924|gb|EGI53082.1| protein ImpA [Escherichia coli H299]
          Length = 145

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++   +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRGEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134


>gi|319787703|ref|YP_004147178.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466215|gb|ADV27947.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis
           11-1]
          Length = 182

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 40/138 (28%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + R+     L+   LAR+ G+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DIGARLQRVRTARGLSQRELARRVGVTNSTISLIEQNKV-----SPSVSSLKKVLDGIPI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSP 126
           ++          G+  +       L     +    +      P         V P     
Sbjct: 57  SLADFFTQDLDPGQPEQPFYTADELPDVGNNDIHYYLVGQHRPQRQMCILREVMPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++       
Sbjct: 117 GEAMIVHEGEEGGVIVAG 134


>gi|321224644|gb|EFX49707.1| Error-prone repair protein UmuD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 79

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
            +      GD+L+++S+   + GD ++     G+   K L  R   ++ L+ +N  Y   
Sbjct: 1   MIEAGISDGDLLVVDSSRNADHGDIVIAAI-EGEFTVKRLQLRP--TVQLIPMNGAYRPI 57

Query: 206 TVEMSD-IEWIARI 218
            V   D ++    +
Sbjct: 58  PVGSEDTLDIFGVV 71


>gi|304314715|ref|YP_003849862.1| hypothetical protein MTBMA_c09540 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588174|gb|ADL58549.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 203

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%)

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
               SM P  R G  LI+        GD ++ K     ++ K +       + LMS N  
Sbjct: 112 VSGDSMYPTLRDGQELIVLKTDDYKVGDIVIAKHPEYGLIVKRVGKIEPTRVYLMSDNKK 171

Query: 202 YPVDTVEMS 210
                   S
Sbjct: 172 VERIYTPTS 180


>gi|258620266|ref|ZP_05715305.1| putative transcriptional regulator [Vibrio mimicus VM573]
 gi|258587624|gb|EEW12334.1| putative transcriptional regulator [Vibrio mimicus VM573]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 61/227 (26%), Gaps = 26/227 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +  +      +    A++ G+  T   K  + G       P  ++  +I A    +
Sbjct: 4   LQERLKFIIGEQ--SLRSFAQEVGVSETMIRKYLKGG------MPGLDNAARICATKGIS 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS--- 125
           +                 ++   +  +         D      G                
Sbjct: 56  VHWFATGEGDVYFADLDPQERARV--YIQDEETALLDDFALIDGYHVTIEETTRDAHPKV 113

Query: 126 ---------PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                                     +      L   GD ++++++      D +     
Sbjct: 114 RRRLAFRKKWLEYRGLQPENLKIFFVKSYIEGALISGGDSVMIDTSDTEVS-DGVFAIEL 172

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILW 220
             + V + L +R   S+D+ S     P + V       I+ + R++W
Sbjct: 173 LSNTVIRWLKARIDGSVDVYSDIDSEPDENVAPDMLDKIKILGRVVW 219


>gi|300772191|ref|ZP_07082061.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760494|gb|EFK57320.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 243

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 39/239 (16%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I  + +   +T   LA   G+   +              +PST+   +I+     T  +
Sbjct: 7   YIKSILKERGITIEELANYLGMTRVTL-----GNRLKHEVYPSTDEKVRIIEFLKMTPSE 61

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD------SGVFPTGNKWNTVGVPEIRS 125
           +  L    G   +    E   +      S G F             G   +      +  
Sbjct: 62  INSLNAMGGNAFDLGSIEEDQVSELVEISPGRFRMKVELVPMYAQAGYLTDYTDTHFLEE 121

Query: 126 PHNGIY----AIQTQDTRHKTQDTSMLP-----LYRKGDILILN-----------SAIQV 165
                +      +      +T   SM           G I++              + + 
Sbjct: 122 LPVHYFTTDRPAKGNYRAFETYGDSMDNGDIKEAIPSGIIVVGRELDRKYWTSKLHSHKW 181

Query: 166 NCGDRLLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCC---YPVDTVEMSDIEWIARIL 219
                 +    T  IV K +   +     + L SLN     YP  T+ + D++ I  ++
Sbjct: 182 PNW---IFVHNTEGIVVKQIADQNLETGDLTLTSLNPDKRKYPDFTINLDDVKQIYNVI 237


>gi|28209943|ref|NP_780887.1| transcriptional regulator [Clostridium tetani E88]
 gi|28202378|gb|AAO34824.1| predicted transcriptional regulator [Clostridium tetani E88]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 21/220 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I       N++   L +K G+     N+ +        R  +   I +I    N+
Sbjct: 3   RVGRNIKTYRLEANMSQKQLGKKIGVSENFINEIETG-----KRIINENLIDRIGKILNK 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +  +            K EKE  +     +     +           N       ++  
Sbjct: 58  DLNDITMFYED-----MKDEKENKVYDIKENKVQEVWKEAFGSVLRDVNIFDYSLNKTLG 112

Query: 128 NGIYAI---------QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRT 177
           +    +         Q +    K +D  M      K D+++ +   ++       +    
Sbjct: 113 SRRLPVIDNKVNGYPQDKVFYLKVEDNDMNGFRVFKEDLVLCHITGEIQNNSI-YLIEHN 171

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
                + + +       L+S +     + VE   ++ IAR
Sbjct: 172 DKRQIRQIKNLDNSKFLLISNSTMVNTEAVEKKQVKIIAR 211


>gi|225025369|ref|ZP_03714561.1| hypothetical protein EIKCOROL_02267 [Eikenella corrodens ATCC
           23834]
 gi|224941813|gb|EEG23022.1| hypothetical protein EIKCOROL_02267 [Eikenella corrodens ATCC
           23834]
          Length = 138

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                      +M P +    +++ + +  +    ++           + +       I 
Sbjct: 45  ENCGFFMADGIAMKPTFEGECLILADLSDTILKDGKIYCLEIGAHRWVRRVQVLLD-KII 103

Query: 195 LMSLNCCYPVDTVEMSD---IEWIARI--LW 220
           LM+ N  Y    +   D   +  + R+  +W
Sbjct: 104 LMADNPDYADMEISGEDLNRLNVLGRVRGVW 134


>gi|70732027|ref|YP_261774.1| ultraviolet light resistance protein A [Pseudomonas fluorescens
           Pf-5]
 gi|68346326|gb|AAY93932.1| ultraviolet light resistance protein A [Pseudomonas fluorescens
           Pf-5]
          Length = 150

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +           I A             SM       GD+ I++ +I+   G  ++  
Sbjct: 42  DHIEQQISLDQVLNIRA--PHVYLVSISGESMQGAGIFDGDLAIVDRSIEAMHGHIVIAL 99

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               D V K +   RG+ I L+S N  YP   V   D   I  ++
Sbjct: 100 LN-NDPVCKRVC-LRGKDIVLLSENPKYPPRYVLEGDELTIWGVV 142


>gi|91775748|ref|YP_545504.1| putative phage repressor [Methylobacillus flagellatus KT]
 gi|91709735|gb|ABE49663.1| putative phage repressor [Methylobacillus flagellatus KT]
          Length = 239

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/188 (6%), Positives = 49/188 (26%), Gaps = 7/188 (3%)

Query: 36  TSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
                + R       ++     + +++               +          +  +   
Sbjct: 46  PYIEVASRGRKGRTKKYHPPAELRELINKQYPNGRPAPHRYSTGSGAKAHVANDYAVASS 105

Query: 96  PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
                                ++      +  +  +           + TS+ P    GD
Sbjct: 106 RVVRYERPNYRYESLEEYLVESIDFNPASNQLDTPF---QYLKIFTVRGTSLEPSMHDGD 162

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC-CYPVDTVEMSD--- 211
            ++++   +    + + +  +   I  K +  R   ++ + + N    P +     +   
Sbjct: 163 EVLVDIRCRSFDDNAVFVIGQNDIIRIKRVQLRLDGTVVVRNDNDGDLPPEIYTAEEAKR 222

Query: 212 IEWIARIL 219
            + I +++
Sbjct: 223 FKVIGKVI 230


>gi|304399134|ref|ZP_07381002.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB]
 gi|304353374|gb|EFM17753.1| Peptidase S24/S26A/S26B, conserved region [Pantoea sp. aB]
          Length = 146

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
                  P     +      +T     + +  SM+      GD+L+++ +     G  ++
Sbjct: 33  AIGYEDTP--LDLNEYCVRAKTATYFVRCEGESMIGAGIFDGDLLVVDKSKAAADGQIVI 90

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                G+   K L  R      L+++N  +    VE   +E    +
Sbjct: 91  ASVD-GEFTVKKLQLRPVP--MLLAMNPRFKPIPVEPDGLEIWGVV 133


>gi|170078455|ref|YP_001735093.1| LexA repressor [Synechococcus sp. PCC 7002]
 gi|169886124|gb|ACA99837.1| LexA repressor [Synechococcus sp. PCC 7002]
          Length = 205

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 47/197 (23%), Gaps = 7/197 (3%)

Query: 29  RKAGLDPTSFNKSKRFGIEGRNRWPSTESI--FKILAATNETICQLLDLPFSDGRTTEKK 86
           +K  +          + I+     PS   +     L +      +L  L           
Sbjct: 2   QKLTVAQQELYDWLVYYIQTNQHAPSIRQMMVAMNLRSPAPIQSRLERLRKKKYIDWIDG 61

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
           +     +  P     G    G    G         +  +        Q      K    S
Sbjct: 62  KARTLKILRPQQQREGLPILGTITAGGLVEPFTDDQSETLILNQVVNQPNCYALKVTGDS 121

Query: 147 M-LPLYRKGDILILNSAIQV---NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
           M      +GD  I+           G  +  +        K      G+ + L   N  Y
Sbjct: 122 MIEAFITEGDYAIMQKVFDPDRVKNGTIVAARVTGDGTTLKHFYR-EGKKVVLKPANPKY 180

Query: 203 PVDTVEMSDIEWIARIL 219
                +  +++    ++
Sbjct: 181 DEIKTDALNVDLQGVLV 197


>gi|197336396|ref|YP_002157228.1| LexA repressor [Vibrio fischeri MJ11]
 gi|226694243|sp|B5FCB2|LEXA_VIBFM RecName: Full=LexA repressor
 gi|197317886|gb|ACH67333.1| LexA repressor [Vibrio fischeri MJ11]
          Length = 208

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 32/214 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTARQQEVFDLIKAKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                       +  + +           G    G    G    
Sbjct: 46  HLKALARK----------QVIEIIPGASRGIRILLQDADDHDEELGVPLIGQVAAGEPIL 95

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 96  AQEHVESHYKVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 154

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  + G  + L + N  +    V++
Sbjct: 155 VDDDVTVKRLERK-GSMVFLHAENEEFSPIEVDL 187


>gi|325103718|ref|YP_004273372.1| Peptidase S24/S26A/S26B, conserved region [Pedobacter saltans DSM
           12145]
 gi|324972566|gb|ADY51550.1| Peptidase S24/S26A/S26B, conserved region [Pedobacter saltans DSM
           12145]
          Length = 229

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 14/223 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFN-KSKRFGIEGRNRWPSTESIFKILAATNET 68
            E I +  +   +T     ++ G    +F+ + K     G ++    E+I K     N  
Sbjct: 4   LERIKQFIDSKGITNQKFEKEVGFSNGAFSSQLKNNRTIGVDK---LENILKKYPELNPI 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                +    +  +  +                      +  + +            P +
Sbjct: 61  WALTGNGDMLNMESLSEDNIVTYGEKDKKREIQNIPLYSITASASILELFSDHNRTIPID 120

Query: 129 GIYA--IQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---I 180
            I    +   D        SM PL + GD++    + +   +  G+  ++          
Sbjct: 121 YIRIPNLPKCDGAIYITGDSMYPLLKSGDMVFYKNILNKDNIIWGEMYVLYIDNDGDEYF 180

Query: 181 VAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             K L    R   +  +S N  +      +  I+ +A I+ AS
Sbjct: 181 FTKYLQKSERPGYVKCVSQNQHHQPVEFPIGSIKALA-IVKAS 222


>gi|329963276|ref|ZP_08300989.1| bacteriophage CI repressor protein [Bacteroides fluxus YIT 12057]
 gi|328528815|gb|EGF55759.1| bacteriophage CI repressor protein [Bacteroides fluxus YIT 12057]
          Length = 240

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 56/211 (26%), Gaps = 21/211 (9%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           T S LA   G+  ++ +                  I K  +  +                
Sbjct: 26  TDSELAAFLGISRSTLSNWTARNSIDFP------LILKRFSDIDYNWLLAGKGTPMHQPV 79

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI--------Q 134
               E     +    +            T    +     +        YA+         
Sbjct: 80  FCNSELAKGEVEIIHNPKTPECIDDRSVTLYDISAAANLKTMLADRPQYALGKILIPNVP 139

Query: 135 TQDTRHKTQDTSMLPLYRKGDIL---ILNSAIQVNCGDRLLIKPRTGD---IVAKVLISR 188
             D        SM P+ + GDI+    ++S   V  G+  L+    G    +  K +   
Sbjct: 140 QCDGAVYVSGDSMYPILKAGDIVGFKSISSFSDVIYGEMYLVSFERGGDEYLAVKYINRS 199

Query: 189 R-GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                + L+S N  +    + +  I  +A +
Sbjct: 200 EQAGCLKLVSYNTHHDPMDLPLQAINAMAIV 230


>gi|189424042|ref|YP_001951219.1| phage repressor [Geobacter lovleyi SZ]
 gi|189420301|gb|ACD94699.1| putative phage repressor [Geobacter lovleyi SZ]
          Length = 284

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 31/235 (13%)

Query: 4   FSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGR--------NRWPS 54
            S +++   I    E+  L T   LA   G+     +  K                    
Sbjct: 37  LSTRQVLARIK---EQLGLDTDIELAEAMGIGIRRIHNWKHRNTVPTEEIVAICGKEGLD 93

Query: 55  TESI-----------------FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
            + I                  K     N    Q      +   +     +  P      
Sbjct: 94  LQYILTGPGPLQGGGAMQAGAKKGAVHCNFDPEQANKPRDTYTPSQCGHPRIHPPYKAYT 153

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
             S        F +    + +  P +   ++ +          K    +M P  + GD++
Sbjct: 154 QRSEKGEVLSSFSSPQIVDVLA-PGLNWLNHSLGIAPEHFLLVKALGDNMAPWLQDGDLI 212

Query: 158 ILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           +++++      G  LL++   G ++ + +       + +   N C P D ++ +D
Sbjct: 213 MVDTSIKTTTAGGCLLLRYPDGVLMVRRVFRSPEGRLMVRDDNECSPPDAIDPND 267


>gi|165924000|ref|ZP_02219832.1| hypothetical protein COXBURSA334_0750 [Coxiella burnetii RSA 334]
 gi|165916563|gb|EDR35167.1| hypothetical protein COXBURSA334_0750 [Coxiella burnetii RSA 334]
          Length = 228

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 73/231 (31%), Gaps = 24/231 (10%)

Query: 1   MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     +++  A  +    E   L+    A+K+G+  T+    +    +G       +S+
Sbjct: 1   MKRLKEERLARAKRVQAAREMTKLSRREFAKKSGIANTTLQHWE----DGEKHTLPEKSV 56

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + + A    +       +         +    +++   +           PT       
Sbjct: 57  RRFIKAL-LNLGVHCSYDWLMHGKGPAPQYAGHVIFQEETTD--------LPTHGARQKN 107

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIK 174
              EI+       +           D +M P + +G+++    +    I+   G   ++ 
Sbjct: 108 EDEEIKEELTLFLSRNKNTVHLVVSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVL 167

Query: 175 PRTGDIVAKVLISRRGRSIDLMSL-NC---CYPVDTVEMSDIEWIARILWA 221
            + GD++ + ++         +   N            + ++   A ++WA
Sbjct: 168 VQGGDLLLRTILKGDVEGYYHLGYTNPKTTASKPFLYNI-ELVNAAPVIWA 217


>gi|319408510|emb|CBI82163.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 191

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 37/218 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KIW  +    +   L+ S LAR+                E   R     ++ K+L     
Sbjct: 2   KIW--LSEALQESGLSQSSLARQL--------------SEKMQRPIYRSAVNKMLTGERG 45

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSP 126
              Q         +    ++K IPL+ +  +GS         P  + W   V +P   + 
Sbjct: 46  ISMQEGIAIEEITKYPLPRKKTIPLMGYVGAGSEVT------PYEDGWLEEVEIPPYIT- 98

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKV 184
                         K +  SM P      IL  +  +  N     + ++  + G    K+
Sbjct: 99  --------KDTYAVKVEGDSMEPFIEDKSILFYSQNMSPNLLLNKKAIVYTQDGRCFVKI 150

Query: 185 L-ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           +    +    +L SLN  YP   ++   + W A I W 
Sbjct: 151 VKQGSKPDLFNLESLNRLYP--EIKDIQLVWAAPIDWI 186


>gi|305667801|ref|YP_003864275.1| putative UV protection protein [Escherichia coli]
 gi|304655550|emb|CBM42208.1| putative UV protection protein [Escherichia coli]
          Length = 145

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134


>gi|299142200|ref|ZP_07035333.1| conserved hypothetical protein [Prevotella oris C735]
 gi|298576289|gb|EFI48162.1| conserved hypothetical protein [Prevotella oris C735]
          Length = 221

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 68/203 (33%), Gaps = 12/203 (5%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             S  A+  G+ PT          +G+   PS + I KI A  N +   LL    +  +T
Sbjct: 18  NQSAFAKAVGVTPTVIANVV-GTRQGK---PSFDVISKICANANISADWLLTGKGAMLKT 73

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRSPHNGIYAIQTQDTRH 140
           T+++   +  +       G  +    F  G    +N   +    +     +      T  
Sbjct: 74  TQQEHMIVEPVRSNSPNKGAPYYDVDFLGGFDLTFNDQTINPEYNIDFRPFNKPG-VTWV 132

Query: 141 KTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMS 197
                SM P    GDI+ L       V  G+   +   T     K+L   +    +  + 
Sbjct: 133 NITGHSMEPKINHGDIIALKECRLEDVQYGEIYAVVLDTI-RTVKILRKAKDPNRMRYVP 191

Query: 198 LN-CCYPVDTVEMSDIEWIARIL 219
           +N   Y     + S I  I  +L
Sbjct: 192 INEENYDEQEYDNSRILRIFEVL 214


>gi|162134183|gb|ABX82523.1| UmuD [Acinetobacter johnsonii]
          Length = 191

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V +    +  +   +      K    SML       D LI++ +I    GD ++      
Sbjct: 93  VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 151

Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   K L          + L + N  +    ++      I
Sbjct: 152 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVI 191


>gi|239760526|gb|ACS15169.1| hypothetical protein [Campylobacter fetus subsp. venerealis NCTC
           10354]
 gi|299469437|emb|CBH51838.1| hypothetical protein [Campylobacter fetus subsp. fetus]
          Length = 229

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 64/219 (29%), Gaps = 15/219 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + ++   + LT S    K G+     N  +             +  +KI  AT   I
Sbjct: 7   GDKLRKLRNAYGLTQSEFGDKIGISRVRVNSYENNITP-----LPMQVKYKIAEATGINI 61

Query: 70  CQLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIR 124
               +        ++     +  ++ +     +    + D   F  G    +        
Sbjct: 62  EYFDNDIDLATAISKYGISSENGKLQIKTNKETICTIYDDLYDFANGRYSIDPYLQKVQI 121

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                  +           +   +P    GDIL++           L+      +I+ K 
Sbjct: 122 LTKLFNLSKPYDYNFVVATNKKAIPFASDGDILVIVKDNIPKDNALLI-LKVNDEILVKY 180

Query: 185 LISRR-GRSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
                  ++I L S N  +    +   +   +E++  I+
Sbjct: 181 CRINPFNQNIKLFSTNDDFSNIELSQKELYGVEFLGYIV 219


>gi|307544613|ref|YP_003897092.1| hypothetical protein HELO_2023 [Halomonas elongata DSM 2581]
 gi|307216637|emb|CBV41907.1| hypothetical protein HELO_2023 [Halomonas elongata DSM 2581]
          Length = 142

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                 +  +          + +  SM        DIL+++ ++    G  ++     G+
Sbjct: 37  ERTLDLNERLVKHPAATFFMRVEGHSMQAHSIHHDDILVVDRSVTACFGHIVIALVD-GE 95

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +V K L  R GR+  L S +  +    V    ++    +
Sbjct: 96  VVVKRLEQRHGRTF-LCSGHPDHAPIPVNERSLQIWGVV 133


>gi|296453865|ref|YP_003661008.1| putative prophage repressor [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183296|gb|ADH00178.1| putative prophage repressor [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 128

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            T     +    SM+      GD+LI++ ++    GD ++      +I  K L+SR G +
Sbjct: 13  DTTLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGD-VVAAVMDDEIAIKRLVSRAGIT 71

Query: 193 IDLMSLNCCYPVD 205
           I L + N  YP  
Sbjct: 72  I-LHAENPRYPDY 83


>gi|301310297|ref|ZP_07216236.1| UmuD protein [Bacteroides sp. 20_3]
 gi|300831871|gb|EFK62502.1| UmuD protein [Bacteroides sp. 20_3]
          Length = 148

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + + +      +  +    T     +    SM      +GDIL+++ ++++   D  +  
Sbjct: 36  DYMEL--AIDLNKELIKHPTSTFYGRVVGDSMKDEGIEEGDILVIDKSLELMDDDLAVCF 93

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              GD   K +      +  L+  N  YP   V   +   +  I+
Sbjct: 94  ID-GDFTVKRV-RLESDAAWLVPSNAKYPPIKVTKDNEFMVWGIV 136


>gi|295402699|ref|ZP_06812642.1| putative phage repressor [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975271|gb|EFG50906.1| putative phage repressor [Geobacillus thermoglucosidasius C56-YS93]
          Length = 98

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                    D  M P    GD  I++++++    G  + +    G I       R  R +
Sbjct: 2   GNLFVLHVTDDQMAPTILAGDTAIVDTSVKPLPNGKDVAVLAVDGKIHVCRFTRRENRIV 61

Query: 194 DLMSLNCCYP---VDTVEMSDIEWIARILWAS 222
                   Y       +    +E I +++  S
Sbjct: 62  M------AYDNGTTRIIPERQVEVIGKVILVS 87


>gi|218779193|ref|YP_002430511.1| XRE family transcriptional regulator [Desulfatibacillum
          alkenivorans AK-01]
 gi|218760577|gb|ACL03043.1| transcriptional regulator, XRE family [Desulfatibacillum
          alkenivorans AK-01]
          Length = 115

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+    KKI + I  +   +NLT + LA   GL   S ++ +R         PS +++ K
Sbjct: 1  MSGL-EKKIGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVT-----LPSVKTLAK 54

Query: 61 ILAATNETICQLLDLPF 77
          +  +   ++ Q  D   
Sbjct: 55 VAESLGSSLKQFFDFDE 71


>gi|9507468|ref|NP_052475.1| hypothetical protein ColIb-P9_p029 [Plasmid ColIb-P9]
 gi|32470183|ref|NP_863407.1| hypothetical protein R64_p052 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|58000288|ref|YP_190180.1| ImpA UV protection protein [Escherichia coli]
 gi|60115646|ref|YP_209437.1| ImpA [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|168758407|ref|ZP_02783414.1| protein ImpA [Escherichia coli O157:H7 str. EC4401]
 gi|168770622|ref|ZP_02795629.1| protein ImpA [Escherichia coli O157:H7 str. EC4486]
 gi|168770704|ref|ZP_02795711.1| protein ImpA [Escherichia coli O157:H7 str. EC4486]
 gi|191166311|ref|ZP_03028144.1| protein ImpA [Escherichia coli B7A]
 gi|193063037|ref|ZP_03044129.1| protein ImpA [Escherichia coli E22]
 gi|194447054|ref|YP_002039080.1| protein ImpA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194447279|ref|YP_002043875.1| protein ImpA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|209921994|ref|YP_002296067.1| ImpA protein [Escherichia coli SE11]
 gi|218711093|ref|YP_002418713.1| Peptidase S24 impA [Escherichia coli ED1a]
 gi|226201033|ref|YP_002756645.1| ImpA UV protection protein [Escherichia coli]
 gi|256367545|ref|YP_003108104.1| UV protection and mutation protein [Escherichia coli]
 gi|300904889|ref|ZP_07122712.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300939497|ref|ZP_07154158.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
 gi|300993848|ref|ZP_07180581.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|301029903|ref|ZP_07192915.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
 gi|301307367|ref|ZP_07213372.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|307313339|ref|ZP_07592962.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W]
 gi|309783588|ref|ZP_07678238.1| ImpA UV protection protein [Shigella dysenteriae 1617]
 gi|317054706|ref|YP_004119773.1| ImpA [Escherichia coli]
 gi|331675767|ref|ZP_08376485.1| protein ImpA [Escherichia coli H591]
 gi|124420|sp|P18641|IMPA_SALTY RecName: Full=Protein impA; Contains: RecName: Full=Protein impA'
 gi|75381951|sp|Q7BSM9|IMPA_SHIFL RecName: Full=Protein impA; Contains: RecName: Full=Protein impA'
 gi|75485096|sp|Q5J3U9|IMPA_SALCH RecName: Full=Protein impA; Contains: RecName: Full=Protein impA'
 gi|115502231|sp|Q7M1C0|IMPA_ECOLX RecName: Full=Protein impA; Contains: RecName: Full=Protein impA'
 gi|47747|emb|CAA37607.1| unnamed protein product [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|4138833|gb|AAD03592.1| ImpA [Shigella flexneri]
 gi|4512465|dbj|BAA75114.1| impA [Plasmid ColIb-P9]
 gi|20521551|dbj|BAB91615.1| DNA polymerase V subunit ImpA [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|45758204|gb|AAS76416.1| ImpA [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|47716802|gb|AAT37579.1| ImpA UV protection protein [Escherichia coli]
 gi|189354801|gb|EDU73220.1| protein ImpA [Escherichia coli O157:H7 str. EC4401]
 gi|189360479|gb|EDU78898.1| protein ImpA [Escherichia coli O157:H7 str. EC4486]
 gi|189360565|gb|EDU78984.1| protein ImpA [Escherichia coli O157:H7 str. EC4486]
 gi|190903738|gb|EDV63454.1| protein ImpA [Escherichia coli B7A]
 gi|192931296|gb|EDV83898.1| protein ImpA [Escherichia coli E22]
 gi|194358498|gb|ACF56942.1| protein ImpA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194405583|gb|ACF65804.1| protein ImpA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|209915172|dbj|BAG80245.1| ImpA protein [Escherichia coli SE11]
 gi|218349876|emb|CAQ87282.1| Peptidase S24 impA [Escherichia coli ED1a]
 gi|219881662|gb|ACL52032.1| ImpA UV protection protein [Escherichia coli]
 gi|228480800|gb|ACQ42126.1| UV protection and mutation protein [Escherichia coli]
 gi|284433234|gb|ADB84973.1| ImpA [Escherichia coli]
 gi|299877279|gb|EFI85490.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
 gi|300305049|gb|EFJ59569.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|300403222|gb|EFJ86760.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300455635|gb|EFK19128.1| peptidase S24-like domain protein [Escherichia coli MS 21-1]
 gi|300837451|gb|EFK65211.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|306906761|gb|EFN37271.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli W]
 gi|308928484|gb|EFP73941.1| ImpA UV protection protein [Shigella dysenteriae 1617]
 gi|315063808|gb|ADT78134.1| UV protection and mutation protein [Escherichia coli W]
 gi|315253192|gb|EFU33160.1| peptidase S24-like domain protein [Escherichia coli MS 85-1]
 gi|315297100|gb|EFU56380.1| peptidase S24-like domain protein [Escherichia coli MS 16-3]
 gi|321271697|gb|ADW79784.1| UV protection protein UmuD [Escherichia coli]
 gi|323184005|gb|EFZ69387.1| protein samA [Escherichia coli 1357]
 gi|323380947|gb|ADX53214.1| Peptidase S24/S26A/S26B, conserved region [Escherichia coli KO11]
 gi|324015240|gb|EGB84459.1| peptidase S24-like domain protein [Escherichia coli MS 60-1]
 gi|324016378|gb|EGB85597.1| peptidase S24-like domain protein [Escherichia coli MS 117-3]
 gi|331076541|gb|EGI47817.1| protein ImpA [Escherichia coli H591]
 gi|332346557|gb|AEE59889.1| DNA repair protein UmuD [Escherichia coli UMNK88]
 gi|333011765|gb|EGK31171.1| protein samA [Shigella flexneri K-227]
          Length = 145

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134


>gi|237745715|ref|ZP_04576195.1| repressor protein [Oxalobacter formigenes HOxBLS]
 gi|229377066|gb|EEO27157.1| repressor protein [Oxalobacter formigenes HOxBLS]
          Length = 224

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 16/175 (9%)

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  I  +  +      D P      +E +   +P+L    +   G F+  V   G    
Sbjct: 52  RMEDISPSLAKKAKLFSDTPKEPQSPSEDEYFLVPILDVHAACGNGHFNDQVLVEGG--- 108

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
              +P++     G+   + +      +  SM P  + G ++++N A +     ++     
Sbjct: 109 -FALPKVMLHDLGV--PEGEGRIIHAKGNSMAPTIQDGAVVLINLADREPMMSKVYAVCL 165

Query: 177 TGD-IVAKVLISRRGR-----SIDLMSLNCC---YPVDTVEMSDIEWI-ARILWA 221
             + +V K L              + S +     +P   +   +   I  R +W 
Sbjct: 166 PHEGLVLKRLTYEYNEAAGTSVWMMKSDSPDKHQHPDRRLPPDESTIIVGRAVWY 220


>gi|171910449|ref|ZP_02925919.1| SOS-response transcriptional repressor, LexA [Verrucomicrobium
           spinosum DSM 4136]
          Length = 202

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 8/112 (7%)

Query: 109 FPTGNKWNTVGVPEI---RSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQ 164
            P G   +     +            + +++    K +  SM      +GD +IL     
Sbjct: 83  IPAGFTADNPEHSDGNLTLDLRTMGLSPRSKPFALKVRGDSMTGAHIIQGDYVILE-QRD 141

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
               D +      G+   K  +   G+   L + N  YP   +   ++    
Sbjct: 142 PRPKDIVAALMD-GETTLKRYLVDNGQPF-LRAENPSYPDL-IPARELMIQG 190


>gi|240126045|ref|ZP_04738931.1| Putative phage repressor protein, putative phage associated protein
           [Neisseria gonorrhoeae SK-92-679]
          Length = 59

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARILWAS 222
             ++    + G    K LI + G S+ + S N   YP +T  +  +  I R+ W S
Sbjct: 1   DGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWS 56


>gi|321271597|gb|ADW79685.1| UV protection protein UmuD [Salmonella enterica subsp. enterica
           serovar Kentucky]
          Length = 145

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R    ++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLRPRPVLEPVSDSPEF--RTLYPENICIFGVV 134


>gi|145596662|ref|YP_001160959.1| helix-turn-helix domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145305999|gb|ABP56581.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
          Length = 191

 Score = 57.5 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 7/139 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + R   +  +T + LA   G+  ++ ++ +        R PS E +  I AA   
Sbjct: 11  EIGPRLKRARAQRGVTLAELAEATGISKSTLSRLEAGQ-----RKPSLELLLPIAAAHRI 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L+D+P         + +++      P                   ++  P+    +
Sbjct: 66  PLDKLVDVPQIGDPRVRLQPRKVNGRTVLPLTQHPGSLQAWKVIIPVDQSMPEPKTHEGY 125

Query: 128 NGIYAIQTQDTRHKTQDTS 146
             +Y +  +          
Sbjct: 126 EWLYVLAGRLRL--VLGDH 142


>gi|332662749|ref|YP_004445537.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100]
 gi|332331563|gb|AEE48664.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 150

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + E  +  N +          +    SM        DILI++ ++Q    D ++     
Sbjct: 41  YLEEKLNLDNYLIKNPASTFFIRADGDSMTGAGIYPEDILIVDRSLQAKSKDVIV-AWLD 99

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD   K L+  +GR   L   N  +    V   +   +  ++
Sbjct: 100 GDFTLKRLVYEQGRC-WLRPENPQFTAIEVIAENDFRVWGVV 140


>gi|205320819|gb|ACI02934.1| RumA [uncultured bacterium HH1107]
          Length = 168

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +   +    +  +   +      K    SM        D L+++ +++    D ++  
Sbjct: 57  DYID--KTLDMNEHLVKNEAATFVVKVASLSMRDAGIEIDDELLVDRSLEAKHEDIVIAL 114

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               D   K L+   G    L + N  Y    +       I  ++
Sbjct: 115 ID-NDFTVKRLM-VEGDKCWLKAENPDYDDIHLNDCQELLIWGVV 157


>gi|145641694|ref|ZP_01797270.1| hypothetical protein CGSHiR3021_02044 [Haemophilus influenzae
           R3021]
 gi|145273508|gb|EDK13378.1| hypothetical protein CGSHiR3021_02044 [Haemophilus influenzae
           22.4-21]
          Length = 85

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR------SIDLMSLNC 200
           MLP + +GD+++++  I    G  +       +   K       R        +L+ LN 
Sbjct: 1   MLPRFNEGDLVLIDPDIVPTPGKFVAAINGDNEATFKQYKELGIRTPEGIPHFELVPLNP 60

Query: 201 CYPVDTVEMSDIEWIA 216
            +P  +    +I  I 
Sbjct: 61  MFPTLSSLDQEIRIIG 76


>gi|293376878|ref|ZP_06623096.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|292644488|gb|EFF62580.1| DNA-binding protein [Turicibacter sanguinis PC909]
          Length = 330

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H ++   I  + +R  ++   LA + G+   + +  +R   +     P  E + K+ A  
Sbjct: 3  HHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQ-----PDLEMLMKLAAIF 57

Query: 66 NET 68
             
Sbjct: 58 ETD 60


>gi|89894953|ref|YP_518440.1| hypothetical protein DSY2207 [Desulfitobacterium hafniense Y51]
 gi|89334401|dbj|BAE83996.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 252

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 41/231 (17%)

Query: 19  RHNLTPSGLARKAG------LDPT--SFNKSKRFGIEG-------------RNRWPSTES 57
           R  +T +  A            P+  +  K +    E              +    S E+
Sbjct: 30  RGGMTDAEFASALKSFTDGKFSPSANTIQKYRTGQREPSYENLQSILAYGTKTNRISPET 89

Query: 58  IFKILA--ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK- 114
             K++      E + Q   L  +D ++    E+E   L      +         P G+  
Sbjct: 90  AEKLMEFFHLGELMSQYAALSNTDNQSFMVAEEESKYLVDKSRDNREIPILNEIPLGSIP 149

Query: 115 ---WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
               + +  P         + ++           +        D++++           +
Sbjct: 150 ATTHDFITFPSTLLSDEEYFLLKGSL----VDGKN----IEGDDLVLVRKTSIAESNQTV 201

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA---RIL 219
           +    +G ++ K        ++  +  N       V +  ++ I    R++
Sbjct: 202 I-AKLSGGVICKKFFKTDDNNVIFLPSNEDSEP--VPLDSVQIIGVVERVI 249


>gi|91206309|ref|YP_538663.1| UV protection and mutation protein [Escherichia coli UTI89]
 gi|191174393|ref|ZP_03035897.1| protein ImpA [Escherichia coli F11]
 gi|218692925|ref|YP_002406037.1| UV protection and mutation protein [Escherichia coli UMN026]
 gi|256855308|ref|YP_003162552.1| DNA repair protein UmuD [Escherichia coli]
 gi|293404641|ref|ZP_06648634.1| ImpA protein [Escherichia coli FVEC1412]
 gi|300897127|ref|ZP_07115584.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|91075760|gb|ABE10640.1| UV protection and mutation protein [Escherichia coli UTI89]
 gi|190905326|gb|EDV64961.1| protein ImpA [Escherichia coli F11]
 gi|218350088|emb|CAQ87505.1| UV protection and mutation protein [Escherichia coli UMN026]
 gi|256275520|gb|ACU68793.1| DNA repair protein UmuD [Escherichia coli]
 gi|281181675|dbj|BAI58004.1| ImpA protein [Escherichia coli SE15]
 gi|291428353|gb|EFF01379.1| ImpA protein [Escherichia coli FVEC1412]
 gi|300359069|gb|EFJ74939.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|307629853|gb|ADN74156.1| DNA repair protein UmuD [Escherichia coli UM146]
 gi|315290862|gb|EFU50231.1| peptidase S24-like domain protein [Escherichia coli MS 153-1]
 gi|323954217|gb|EGB50005.1| peptidase S24 [Escherichia coli H263]
 gi|324005329|gb|EGB74548.1| peptidase S24-like domain protein [Escherichia coli MS 57-2]
          Length = 145

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +T   SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRTSGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGIV 134


>gi|154706811|ref|YP_001424168.1| hypothetical protein CBUD_0775 [Coxiella burnetii Dugway 5J108-111]
 gi|154356097|gb|ABS77559.1| hypothetical protein CBUD_0775 [Coxiella burnetii Dugway 5J108-111]
          Length = 228

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 73/231 (31%), Gaps = 24/231 (10%)

Query: 1   MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     +++  A  +    E   L+    A+K+G+  T+    +    +G       +S+
Sbjct: 1   MKRLKEERLARAKRVQAAREMTKLSRREFAKKSGIANTTLQHWE----DGEKHTLPEKSV 56

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + + A    +       +         +    +++   +           PT       
Sbjct: 57  RRFIKAL-LNLGVHCSYDWLMHGKGPAPQYAGHVIFQEETTD--------LPTHGVRQKN 107

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIK 174
              EI+       +           D +M P + +G+++    +    I+   G   ++ 
Sbjct: 108 EDEEIKEELTLFLSRNKNTVHLVVSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVL 167

Query: 175 PRTGDIVAKVLISRRGRSIDLMSL-NC---CYPVDTVEMSDIEWIARILWA 221
            + GD++ + ++         +   N            + ++   A ++WA
Sbjct: 168 VQGGDLLLRTILKGDVEGYYHLGYTNPKTTASKPFLYNI-ELVNAAPVIWA 217


>gi|284007721|emb|CBA73522.1| SOS-response transcriptional repressor [Arsenophonus nasoniae]
          Length = 199

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 26/206 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I + + R+    ++    L+   GL   + N  KR         P+  ++  +    N
Sbjct: 4   KTIAKNLTRLMNEKHIESQQLSDITGLGIATVNSLKRGVGN-----PTLTTLEVLANFFN 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++ +L++                                 +    +  N     +    
Sbjct: 59  TSVSELIEKKEKGV--------------LSKVIVEPMPLISLSRIDDYINNQLFEDTFIA 104

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             G Y+  +     K  + ++ P    G I I++  ++V  GD  L+K        + + 
Sbjct: 105 EIGNYS-SSSLFAIKIDNDTLNPHIPIGTICIVSKEVKVKDGDITLVKINHHTPFFRRVY 163

Query: 187 SRRG----RSIDLMSLNCC-YPVDTV 207
                     I + S N   Y    +
Sbjct: 164 IESKYLAFSPIMIES-NPTVYENYEL 188


>gi|149190500|ref|ZP_01868770.1| hypothetical protein VSAK1_13631 [Vibrio shilonii AK1]
 gi|148835624|gb|EDL52591.1| hypothetical protein VSAK1_13631 [Vibrio shilonii AK1]
          Length = 230

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 62/219 (28%), Gaps = 19/219 (8%)

Query: 15  RMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE----SIFKILAATNET 68
            + +   +  + SG+A+KA  D       K     G++R             +     + 
Sbjct: 9   ELMDLPGMPSSNSGIAQKAKRD-----GWKSRKTRGQSRALEYHISSFDERDLAELREKY 63

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR--SP 126
             +++    ++    +  +    +           + S  F   N        E+   S 
Sbjct: 64  GTEVIPDNVTEISNVKAIKDFSQVGELCAVPVYNVYASCGFGAQNDAEYQLRTELLPCSR 123

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVL 185
                  +           SM      GD ++++   ++      + +      +  K L
Sbjct: 124 LKQYGLNENTARIVICHGDSMEDTLSDGDEVLVDTRELEHPVKHGVYVVRIGKHVYIKRL 183

Query: 186 ISR-RGRSIDLMSLNC-CYPVDTVEMS---DIEWIARIL 219
                    +++S N   Y    V      +   I +++
Sbjct: 184 KYDIMAEGYEVISDNKEEYLPFIVNGEKLQEFAVIGKVV 222


>gi|83816438|ref|YP_444450.1| umuD protein [Salinibacter ruber DSM 13855]
 gi|83757832|gb|ABC45945.1| umuD protein [Salinibacter ruber DSM 13855]
          Length = 140

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V      + H  +   +      +   TSM       GDIL+++ A++   GD ++
Sbjct: 30  ASDYVETELDLAEH--LIEHEAATYYLRVSGTSMTRAGIHDGDILVVDRAVEPADGDVVV 87

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
                 ++  K L +R GR+  L+  +  +    V    
Sbjct: 88  AALDA-ELTVKRLRTRDGRAF-LVPESQHHDPIPVRDGQ 124


>gi|152997972|ref|YP_001342807.1| prophage MuMc02, S24 family peptidase [Marinomonas sp. MWYL1]
 gi|150838896|gb|ABR72872.1| prophage MuMc02, peptidase, family S24 [Marinomonas sp. MWYL1]
          Length = 57

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWA 221
           +    G++  K +  +    + + S N  Y   T+ +     ++ I R++W+
Sbjct: 1   MINYDGELFVKRVQKQLDGLVAITSDNKNYQPMTIPLEGLSKLKIIGRVVWS 52


>gi|226326319|ref|ZP_03801837.1| hypothetical protein PROPEN_00167 [Proteus penneri ATCC 35198]
 gi|225205270|gb|EEG87624.1| hypothetical protein PROPEN_00167 [Proteus penneri ATCC 35198]
          Length = 81

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVD 205
           M P+   G  + +++         +    +      K+L  + G  + + S N   +P +
Sbjct: 1   MSPVIPNGSTVTVDTGNTRIVDGGIYAIEQDALFRIKLLYRQPGGKLIIRSYNKDEFPDE 60

Query: 206 TVEMSDIEWIARILWAS 222
           + E S ++ + RI+  S
Sbjct: 61  SAETSSVKIMGRIIHWS 77


>gi|331001323|ref|ZP_08324948.1| conserved domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329568825|gb|EGG50624.1| conserved domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 231

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 9/210 (4%)

Query: 11  EAIDRM-AERHNLTPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  +  ERH L+     ++ G+   +  ++             +   + K        
Sbjct: 5   ERLKLLWNERHKLSQREFGKRYGIGSGAMVSQYLLGKAP-----LNLAVVVKFAKGLGCK 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + ++        ++      ++       S +     S  +   +          ++   
Sbjct: 60  LEEISPSLALLAQSANALSSKVSETEGGGSQTKLPILSDDYLLSHTTIPENQRSEKNSIT 119

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
               +          D SM P +  GD+L+  S      G  +L +     +  K     
Sbjct: 120 SSLVLTEGAFAWALLDQSMAPEFFSGDLLLFESKELPQPGCFVLAEYDGKILFRKYTEQA 179

Query: 189 RGRSID--LMSLNCCYPVDTVEMSDIEWIA 216
               I   L  LN  YP  +    +IE + 
Sbjct: 180 IDNKIIINLKPLNPDYPTISNSTKEIEILG 209


>gi|161831045|ref|YP_001596928.1| hypothetical protein COXBURSA331_A1189 [Coxiella burnetii RSA 331]
 gi|161762912|gb|ABX78554.1| hypothetical protein COXBURSA331_A1189 [Coxiella burnetii RSA 331]
          Length = 228

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 62/231 (26%), Gaps = 24/231 (10%)

Query: 1   MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     +++  A  +    E   L+    A+K+G+  T+    +           S    
Sbjct: 1   MKRLKEERLARAKRVQAAREMTKLSRREFAKKSGIANTTLQHWEDGEKHTLPEK-SVRRF 59

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K L            +                                  PT       
Sbjct: 60  IKALLNLGVHSSYDWLMHGKGPAPQYAGHVIFQEETT------------DLPTHGARQKN 107

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIK 174
              EI+       +           D +M P + +G+++    +    I+   G   ++ 
Sbjct: 108 EDEEIKEELTLFLSRNKNTVHLVVSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVL 167

Query: 175 PRTGDIVAKVLISRRGRSIDLMSL-NC---CYPVDTVEMSDIEWIARILWA 221
            + GD++ + ++         +   N            + ++   A ++WA
Sbjct: 168 VQGGDLLLRTILKGDVEGYYHLGYTNPKTTASKPFLYNI-ELVNAAPVIWA 217


>gi|163798141|ref|ZP_02192077.1| SOS-response transcriptional repressor [alpha proteobacterium
           BAL199]
 gi|159176584|gb|EDP61162.1| SOS-response transcriptional repressor [alpha proteobacterium
           BAL199]
          Length = 147

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  + Q  SM       GD+LI++ AI     D ++     G++  K L      +
Sbjct: 54  PAATFFVRAQGESMRDAGLFDGDLLIVDRAITPQVSDIVIAAVN-GELTVKRLKKL-QGT 111

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARI 218
             L + N  +    +  +  E    +
Sbjct: 112 WALSAENPEFSDIHLGDAGCEVWGVV 137


>gi|119640088|gb|ABL85463.1| ImpA [Escherichia coli]
          Length = 146

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 40  EQELDLNSYCISRPAATFFLRASGKSMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 98

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +  +   T+   +I     I
Sbjct: 99  FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVI 135


>gi|330825351|ref|YP_004388654.1| putative phage repressor [Alicycliphilus denitrificans K601]
 gi|329310723|gb|AEB85138.1| putative phage repressor [Alicycliphilus denitrificans K601]
          Length = 188

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 51/174 (29%), Gaps = 27/174 (15%)

Query: 31  AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90
           AG+   +    +R+        P  ES  ++      +  +++    +  R      +  
Sbjct: 13  AGITQRAAQSVRRWFDAREPGLPDLESFARLCIGLGCSADEII---GALHREGHDPARCA 69

Query: 91  PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
            ++                        +          G   I       +     M P 
Sbjct: 70  HMVQMANC-------------------IRAITDSLTRRGELGIP-----VRVPGDEMAPR 105

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            + GDI+ + +AI    G+ +    R   ++ + +  R  +SI L   N  Y  
Sbjct: 106 LKAGDIVFVKTAITRIEGNGIYAFTRDDGLLIRRVEQRIDKSIVLQCDNKAYRD 159


>gi|23455722|ref|NP_695031.1| Repressor [Lactococcus phage r1t]
 gi|1353520|gb|AAB18678.1| Repressor protein [Lactococcus phage r1t]
          Length = 278

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 68/269 (25%), Gaps = 58/269 (21%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------------------- 48
           ++ E ID   + +  T      K G   ++ +K  +                        
Sbjct: 5   RLPEMIDYFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDKMVNLFNTDPETL 64

Query: 49  ----RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE--------------- 89
                +   +   I KI +   E   +++    ++    + +EK+               
Sbjct: 65  MYGASDLSTTLSEINKISSQLEEPRQKVVLNTANNQLDEQNQEKKKESKVIPINKIPDDL 124

Query: 90  ----------------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-A 132
                             + Y            G    G   + V   +   P    + +
Sbjct: 125 PPYISRKILENFVMPTNTMEYEADEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLS 184

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191
                        SM P    G  +++ +   V+ G    ++         K +      
Sbjct: 185 SARDYYWLMVDGHSMEPKIPYGAYVLIEAVPDVSDGTIGAVLFHDDCQATLKKVYHEID- 243

Query: 192 SIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            + L+S+N  +        +    I + +
Sbjct: 244 CLRLVSINKEFKDQFATQDNPAAVIGQAV 272


>gi|323493806|ref|ZP_08098924.1| putative phage repressor [Vibrio brasiliensis LMG 20546]
 gi|323311940|gb|EGA65086.1| putative phage repressor [Vibrio brasiliensis LMG 20546]
          Length = 236

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 47/203 (23%), Gaps = 26/203 (12%)

Query: 39  NKSKRFGIEGRNRWPST-------ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
           N   +    G  R           +   +I+        +   L   D          + 
Sbjct: 30  NNWLKRKAIGHARAVEYHISNFHPDIQKQIIERFVTDKTEQKKLLEKDWSLPPSNAHGLK 89

Query: 92  LLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            L      +           G               +P       G+       +     
Sbjct: 90  PLNEFEEWAKLPVYDVHAAAGAGTLVQSEFQIGVFSLPIELLHEYGL--KPDFSSVIFVD 147

Query: 144 DTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLN 199
             SM P     D L+++       V  G  + +      +  K L          ++S N
Sbjct: 148 GDSMEPTLSHRDRLLVDIREQQHPVVNG--VYVIRIDDAVYVKRLHWDIENGVYKVISDN 205

Query: 200 CCYPVDTVEM---SDIEWIARIL 219
             YP   +      + + I + +
Sbjct: 206 LKYPAFNINHKNGRNFKIIGKAV 228


>gi|325479315|gb|EGC82411.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 177

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I R+ +    T   LA K G+  T  ++ +    +     PS E++ KI      T+ 
Sbjct: 4  ENIKRLRKEKGFTQKDLAVKVGVSITFISQIENGISK-----PSDENLKKIADVLGVTVN 58

Query: 71 Q 71
          +
Sbjct: 59 E 59


>gi|294506195|ref|YP_003570253.1| umuD protein [Salinibacter ruber M8]
 gi|294342523|emb|CBH23301.1| umuD protein [Salinibacter ruber M8]
          Length = 194

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + V      + H  +   +      +   TSM       GDIL+++ A++   GD ++
Sbjct: 84  ASDYVETELDLAEH--LIEHEAATYYLRVSGTSMTRAGIHDGDILVVDRAVEPADGDVVV 141

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
                 ++  K L +R GR+  L+  +  +    V    
Sbjct: 142 AALDA-ELTVKRLRTRDGRAF-LVPESQHHDPIPVRDGQ 178


>gi|163814618|ref|ZP_02206007.1| hypothetical protein COPEUT_00769 [Coprococcus eutactus ATCC 27759]
 gi|158450253|gb|EDP27248.1| hypothetical protein COPEUT_00769 [Coprococcus eutactus ATCC 27759]
          Length = 252

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 41/226 (18%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +     +T S LA   G+   +     +    G+ + P  + +  I  A   
Sbjct: 11  DIGYRLKDVMAEKGVTISQLADMTGISEDTI----KAIRSGKTKSPGIQLMISIADALGC 66

Query: 68  TICQLLDLPFSDGRT------------------------TEKKEKEIPLLYFPPSGSGGF 103
           T+   L                                  +  ++++P      S     
Sbjct: 67  TMDGFLHRQSLTHEELYLLSKFRTLNIHGKNMVMLMADSEDHMQRQLPGRNSTASTRKIP 126

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
             S      +  +              Y   T D   +     + P+Y K D+L +    
Sbjct: 127 CISSTHTLASNTDYSTHATEFIDMPADYF-PTADYCLRLTTNMLHPIYMKDDLLAVEKDF 185

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRG-----------RSIDLMSL 198
               GD  +     G  + +    R G           +SI L S 
Sbjct: 186 -PRLGDIAVFLNEDGVEMIRKYTERDGSPYLEAVSRCDKSIYLTSD 230


>gi|312792894|ref|YP_004025817.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312878073|ref|ZP_07738009.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311795152|gb|EFR11545.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|312180034|gb|ADQ40204.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 285

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  + E   LT   LA   GL   S +  +  G     R P   ++ KI      T+  
Sbjct: 5  RLKELREEKGLTQEELALMLGLKRQSISNYENGG-----RQPDYNTLIKIADFFGVTVDY 59

Query: 72 LLDLPFSDGRTTEKKEKEIP 91
          L+       R  E K +   
Sbjct: 60 LVGHSDFRTREEEFKGRNFY 79


>gi|237716927|ref|ZP_04547408.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405696|ref|ZP_06082246.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643378|ref|ZP_06721197.1| bacteriophage CI repressor protein [Bacteroides ovatus SD CC 2a]
 gi|294810638|ref|ZP_06769288.1| bacteriophage CI repressor protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|229442910|gb|EEO48701.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356571|gb|EEZ05661.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641256|gb|EFF59455.1| bacteriophage CI repressor protein [Bacteroides ovatus SD CC 2a]
 gi|294442180|gb|EFG10997.1| bacteriophage CI repressor protein [Bacteroides xylanisolvens SD CC
           1b]
          Length = 237

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 55/209 (26%), Gaps = 20/209 (9%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA   G+   + +         RN       + K     +     L            
Sbjct: 24  SELAEYLGVSRATVSNW-----GARNSIDFRLLLDKFGDKVDYNWLLLGKGNPKHQPRHC 78

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------ 138
           + E     +    +            T          +    +   YA+           
Sbjct: 79  ESELVQGEVEIIHNPKIPEPIDDRSVTLYDITAAANLKTLFTNKKQYALGKILIPNISVC 138

Query: 139 --RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRR- 189
                    SM P+ + GDI+    ++S   V  G+  L+         +  K +     
Sbjct: 139 DGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSFMIDGDEYLAVKYVNRSEQ 198

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              + L+S N  +    +  + I  +A +
Sbjct: 199 EGHLKLVSYNTHHEPMDIPFASINAMAIV 227


>gi|77461744|ref|YP_351251.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
 gi|77385747|gb|ABA77260.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 182

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +         + T+   K   L+                P+    +     P     
Sbjct: 57  SMVEFFSEEILQEKPTQIVYKANELIDISDGAVTMKLVGRAHPSRAIAFLNEIYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLTHEGEETGILVEG 134


>gi|289676789|ref|ZP_06497679.1| peptidase [Pseudomonas syringae pv. syringae FF5]
          Length = 175

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 18/177 (10%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I  AI        L    +A + G+  ++  +          +    E+++ + 
Sbjct: 1   MTRQERIARAIAT----SGLKKGEIAAQCGVANSAVTQWISGES----KSLRPENLYALA 52

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV-GVP 121
            AT      L      +             L   P  S  +        G+    V   P
Sbjct: 53  RATGFRAEWLAIGEGPEQAPAFD---ANVALIDQPKMSFRYPVISWVSAGSWEEAVQPYP 109

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLL 172
           +  S    I  Y  +      + +  SM         +G ++++++   V  G  ++
Sbjct: 110 DGFSDRYEISDYDSKGPAFWLEVKGDSMTAPTGVSVPEGMMILVDTEADVQPGKLVI 166


>gi|146342189|ref|YP_001207237.1| putative LexA repressor [Bradyrhizobium sp. ORS278]
 gi|146194995|emb|CAL79020.1| putative LexA repressor [Bradyrhizobium sp. ORS278]
          Length = 208

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 44/212 (20%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I+R  E+   T  GLAR  G+ P + ++               + + K       T    
Sbjct: 7   IERALEKPGKTKGGLARAMGVRPGAVSEI-----------LGGQRLIKAAEIPLITEYLE 55

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L+     GR       E      P                     V +P         + 
Sbjct: 56  LNSVPIMGRVGAGSVIEPDYEQVPL---------------EGIGEVALP---------FP 91

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV----NCGDRLLIKPRTGDIVAKVLIS- 187
           I  +    +    SMLP Y  GD++++    +       G+  +++ ++G+   K +   
Sbjct: 92  IFEETIAFEVTGDSMLPKYENGDVIVVYKEQRHPLSSYYGEEAVVRLKSGERYLKTIERG 151

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +    ++L S N            ++WI  I 
Sbjct: 152 KSPSVVNLKSFNA--KPIV--GVKLDWIGEIF 179


>gi|160884906|ref|ZP_02065909.1| hypothetical protein BACOVA_02896 [Bacteroides ovatus ATCC 8483]
 gi|156109941|gb|EDO11686.1| hypothetical protein BACOVA_02896 [Bacteroides ovatus ATCC 8483]
          Length = 237

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 54/209 (25%), Gaps = 20/209 (9%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA   G+   + +         RN       + K     +     L            
Sbjct: 24  SELAEYLGVSRATVSNW-----GARNSIDFRLLLDKFGDKVDYNWLLLGKGNPKHQPRHC 78

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------ 138
           + E     +    +                       +    +   YA+           
Sbjct: 79  ESELVKGEVEIIHNPKTAEPTDDRSVMLYDITAAANLKTLFTNKQQYALGKILIPNISVC 138

Query: 139 --RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRR- 189
                    SM P+ + GDI+    ++S   V  G+  L+         +  K +     
Sbjct: 139 DGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSFMIDGDEYLAVKYVNRSEQ 198

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              + L+S N  +    +  + I  +A +
Sbjct: 199 EGHLKLVSYNTHHEPMDIPFASINAMAIV 227


>gi|330812572|ref|YP_004357034.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380680|gb|AEA72030.1| putative transcription regulator, Xre family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 182

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +         + T+   K   L+                P+    +     P     
Sbjct: 57  SMVEFFSEEILQEKPTQIVYKANELIDISDGAVTMKLVGRAHPSRAIAFLNEIYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLTHEGEETGILVEG 134


>gi|149187671|ref|ZP_01865968.1| transcriptional regulator, XRE family with cupin sensor protein
           [Vibrio shilonii AK1]
 gi|148838551|gb|EDL55491.1| transcriptional regulator, XRE family with cupin sensor protein
           [Vibrio shilonii AK1]
          Length = 182

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 16/167 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I      + ER  L+   LA++AG+     ++ +   +      PS  S+ K+L+    
Sbjct: 4   EIGPRFKALRERAGLSQRELAKRAGVTNGFISQIESNAV-----SPSVASLSKLLSKIPS 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYF--PPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           ++ +   +          ++++ P +          G +       G    T  +     
Sbjct: 59  SMAEFFAVDEPKPDQFFSRKQQQPEIGRGKISYRQIGHYHDDRQ-IGMLRET--LSPGAD 115

Query: 126 PHNGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVN 166
             + + A + Q+     Q        S + +  +GD    +S     
Sbjct: 116 TGDEMLAHEGQECGVIVQGELELTVDSEVVVLHEGDSYYFDSTRTHR 162


>gi|15678595|ref|NP_275710.1| hypothetical protein MTH567 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621644|gb|AAB85073.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 206

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%)

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
               SM P  + G  LI+    +   GD ++ +     ++ K +       + LMS N  
Sbjct: 115 VSGDSMYPTLKDGQDLIVLKTDRYTVGDIVIARHPEYGLIVKRVGKIEPERVYLMSDNKK 174

Query: 202 YPVDTVEMS 210
                   S
Sbjct: 175 VERIYTPTS 183


>gi|162134167|gb|ABX82514.1| UmuD [Acinetobacter genomosp. 14]
 gi|162134171|gb|ABX82516.1| UmuD [Acinetobacter junii]
 gi|162134173|gb|ABX82517.1| UmuD [Acinetobacter genomosp. 9]
 gi|270266209|gb|ACZ65037.1| UmuD [Acinetobacter genomosp. 16BJ]
 gi|270266211|gb|ACZ65038.1| UmuD [Acinetobacter berezinae]
 gi|270266213|gb|ACZ65039.1| UmuD [Acinetobacter genomosp. 6]
          Length = 167

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           V +    +  +   +      K    SML       D LI++ +I    GD ++      
Sbjct: 69  VEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITAKAGDIVIAMVD-N 127

Query: 179 DIVAKVL---ISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +   K L          + L + N  +    ++      I
Sbjct: 128 EFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVI 167


>gi|254419340|ref|ZP_05033064.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3]
 gi|196185517|gb|EDX80493.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3]
          Length = 256

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 22/235 (9%)

Query: 2   TSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           T+ + ++ + EA+ R+ +R  L+    A +A +   ++ + ++             ++  
Sbjct: 8   TTLTEQQSLGEALKRLRQRAGLSQEQAAERAEIVEITWRRYEKGVRGVTLDKLIGLAMAI 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                   + Q      S    T +   E    Y PP G  G         GN       
Sbjct: 68  GFDRDALLMEQAAVAGGSVAPPTARGHLERMAAYTPPPGDAGLVIRDRVQAGNWLEADDT 127

Query: 121 PEIRSP----HNGIYAIQTQDTRHKTQDTSMLP-LYRKGDIL----ILNSAIQVNCGDRL 171
            +                      +    S+      +GD++     +         D +
Sbjct: 128 GQSTYRTYPAVRDARYPHADQWLSEVMGDSVNRLNIFEGDMVHLVDCIAIGYHPRTDDVV 187

Query: 172 -LIKPRTG----DIVAKVLISRRGR-SIDLMSLNCCY-PVDTV-----EMSDIEW 214
            + + R G    ++  K +   +    +   S N  +     +     +  +IE 
Sbjct: 188 EVERLRNGGAERELTIKQIELVQDGLLLWPRSTNTRWSQPLELRDGAGDGEEIEV 242


>gi|55822086|ref|YP_140527.1| transcriptional regulator , truncated [Streptococcus thermophilus
           CNRZ1066]
 gi|55738071|gb|AAV61712.1| transcriptional regulator, putative, truncated [Streptococcus
           thermophilus CNRZ1066]
          Length = 92

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 2/85 (2%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
             D        SM P Y  G + ++        G  +           K +       + 
Sbjct: 2   AHDFASWVSGDSMEPKYHNGSVALIRETGFDYDG-AVYAVVCNSQTYIKRVY-LEAEGLR 59

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L+S+N  Y    +   +   + RI+
Sbjct: 60  LVSINPKYKDIFISYDEDPRVVRII 84


>gi|114328137|ref|YP_745294.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1]
 gi|114316311|gb|ABI62371.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1]
          Length = 258

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 62/221 (28%), Gaps = 20/221 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++ +      + L++++G+   + N+          +     ++  +      ++ 
Sbjct: 40  QRLRQIMKEFGGN-NLLSKESGIPVGNLNRYIAG------QEMKVSALVALAETCGVSVE 92

Query: 71  QLLDLPFSDGRTTE----KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            L         T E           ++  P                 +         R  
Sbjct: 93  WLATGRGRKKVTPEGSIAADLGHKDIINLPYFDKEVASKYAYLNDHQEIVPKSYLFERQF 152

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
               +              +M P   K D L++++   V   D +        I  K + 
Sbjct: 153 VESCFKGVNGLVIFNVLADNMTPTIYKEDNLVIDTNESVVY-DGVYAVVMNEIINVKRIK 211

Query: 187 SRRGRSIDLMSLNCCY--PVDTV------EMSDIEWIARIL 219
           S++  +  L S N  Y      +      + S+     R++
Sbjct: 212 SKQNNNFILSSDNALYSSSDIEIKNIGYDKNSECFIFGRVV 252


>gi|222529019|ref|YP_002572901.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455866|gb|ACM60128.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 321

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 6/123 (4%)

Query: 3   SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               + I+   +  + E  NLT + LA K G+   + +  +        R P  +++ KI
Sbjct: 41  DLIEENIFAMRLKELREEANLTQNELAEKLGIGRATLSNYELGV-----RKPDIDTLQKI 95

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               N +   LL +     R +    +EI            F          ++      
Sbjct: 96  ANYFNVSSDYLLGMTPIKKRDSLNSIEEIIKEKKVKELKNFFKHEENVKAYFEYIVSLFE 155

Query: 122 EIR 124
            + 
Sbjct: 156 PLL 158


>gi|238854543|ref|ZP_04644880.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3]
 gi|282932361|ref|ZP_06337794.1| DNA-binding protein [Lactobacillus jensenii 208-1]
 gi|238832836|gb|EEQ25136.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3]
 gi|281303518|gb|EFA95687.1| DNA-binding protein [Lactobacillus jensenii 208-1]
          Length = 213

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++I E ++ + ++  +TP  LA K G+  T+ N  +R   +     PS +++  +  A 
Sbjct: 16 RERIKENLNELLKKRGMTPKELAEKTGIAYTTINNYRRVYAQ--PSLPSKKNLLAMAKAL 73

Query: 66 NETICQLLDLP 76
          N    ++    
Sbjct: 74 NCEPDEIDPSY 84


>gi|91223886|ref|ZP_01259150.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|269966489|ref|ZP_06180573.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
 gi|91191378|gb|EAS77643.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|269828946|gb|EEZ83196.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 185

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +++I + I ++ ++H L+   LA +AG+  ++ +  +   +      PS  S+ KI+ 
Sbjct: 1  MDNQEIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKV-----SPSVSSLQKIVN 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
            + ++ +            +   K   L+  
Sbjct: 56 VFSLSLSEFFTFEQPSNDEVKVVIKPSDLVEI 87


>gi|283954211|ref|ZP_06371735.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794229|gb|EFC32974.1| phage repressor protein, putative [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 77

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           M PL + G I I++           +       +  K ++ +    + L SLN  Y    
Sbjct: 1   MEPLIKDGSICIVDRNKTFKDKSICV-INTRDGLFIKQVLKQDDG-VMLHSLNPLYKDIF 58

Query: 207 VEMSDIEWIARIL 219
            +  D   I  ++
Sbjct: 59  YKNGDFLLIGVVI 71


>gi|189464654|ref|ZP_03013439.1| hypothetical protein BACINT_00997 [Bacteroides intestinalis DSM
           17393]
 gi|189436928|gb|EDV05913.1| hypothetical protein BACINT_00997 [Bacteroides intestinalis DSM
           17393]
          Length = 240

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 58/208 (27%), Gaps = 19/208 (9%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           + LA   G+  ++ +                  + K+       +      P    +   
Sbjct: 28  AALAAYLGVSRSTLSNWCARNSIDFP-----LLLEKLKDVDYNWLLVGKGTPVHQTKICN 82

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA-------IQTQD 137
               +  +       +    D+      +      +  + +  +           I   D
Sbjct: 83  SGIVQGEVEMIHNPKAVEALDNRSISLYDITAAANLKTLLANKDQHVVGRIQIPNIPACD 142

Query: 138 TRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL---LIKPRTGDIVAKVLISRR-G 190
                   SM P+ + GD++    +NS   V  G+             +  K +      
Sbjct: 143 GALYISGDSMYPILKSGDVVGFKEVNSFSSVIYGEMYLVSFCIDGDEYLSVKYVNRSDVE 202

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             I L+S N  +    + ++ I+ +A +
Sbjct: 203 GCIKLVSYNPHHEPMDIPLASIQAMAIV 230


>gi|116494736|ref|YP_806470.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334]
 gi|239631670|ref|ZP_04674701.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066285|ref|YP_003788308.1| XRE family transcriptional regulator [Lactobacillus casei str.
           Zhang]
 gi|116104886|gb|ABJ70028.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC
           334]
 gi|239526135|gb|EEQ65136.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438692|gb|ADK18458.1| Transcriptional regulator, xre family [Lactobacillus casei str.
           Zhang]
          Length = 185

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ ++  L+ + LA   G+   + +K +    E     P  + I K+      + 
Sbjct: 3   GERLTQLRKQKGLSQNDLAEAIGISRQAISKYENGLAE-----PDLDKIAKLRDILGVSY 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
             LL        T+         +    +   G +       G
Sbjct: 58  ADLLGKEPKQQITSNNVSSASITITSLINDRLGSYTGFQVAEG 100


>gi|73490241|dbj|BAE19798.1| hypothetical protein [Pseudomonas fluorescens]
          Length = 198

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 47/138 (34%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 18  DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 72

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +           T+   K   L+                P+    +     P     
Sbjct: 73  SMVEFFSEEILQENPTQIVYKANELIDISDGAVTMKLVGKAHPSRAIAFLNEIYPPGADT 132

Query: 127 HNGIYAIQTQDTRHKTQD 144
            + +   + ++T    + 
Sbjct: 133 GDEMLTHEGEETGILVEG 150


>gi|30248335|ref|NP_840405.1| hypothetical protein NE0318 [Nitrosomonas europaea ATCC 19718]
 gi|30138221|emb|CAD84229.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 265

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 25/76 (32%)

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                             Q   M P  + GD +++++A      D +    +   +  K 
Sbjct: 158 DWRRYAGLNPEHIKIIDVQGDGMKPTLQHGDQVLVDTACNRFVDDAIYAIRQGDMLRIKR 217

Query: 185 LISRRGRSIDLMSLNC 200
           +  R   SI++ S N 
Sbjct: 218 IRLRLDGSIEIRSDNS 233


>gi|117927775|ref|YP_872326.1| putative phage repressor [Acidothermus cellulolyticus 11B]
 gi|117648238|gb|ABK52340.1| putative phage repressor [Acidothermus cellulolyticus 11B]
          Length = 138

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           T+ +  I S        + +      +  SMLP    GD L++    +++ GD ++ +  
Sbjct: 2   TLPLALIASLRTAPVGWRNRWRAVVVEGASMLPTLHSGDCLLVVRTSRLHPGDMVVARHP 61

Query: 177 --TGDIVAKVLISRRGRSIDLMSLNCCYP--VDTVEMSDI---EWIARIL 219
              G +V K L         L+S N   P   D+     +   + + R++
Sbjct: 62  REPGRLVVKRLAWETETGWWLVSDNPQAPGAADSFHFGAVPSADIVGRVV 111


>gi|152973532|ref|YP_001338583.1| umuDC operon protein-like protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330001990|ref|ZP_08304141.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
 gi|150958324|gb|ABR80353.1| umuDC operon protein-like protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328537509|gb|EGF63739.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
          Length = 141

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                         FP+               +      +      +    SM  +    
Sbjct: 12  IVKIPLFTERCPAGFPSPASD---YTESELDLNEYCIHRRHSTYFVRAIGNSMTDIGLYS 68

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           GD+L+++ A Q   GD ++     G+   K L+        L ++N  +P    +   ++
Sbjct: 69  GDLLVVDKAEQPRHGDIVI-AEIEGEFTVKRLLLTP--RPALQAMNPDFPSLYPDPETLQ 125

Query: 214 WIARI 218
               +
Sbjct: 126 IFGVV 130


>gi|323492807|ref|ZP_08097949.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis
          LMG 20546]
 gi|323312878|gb|EGA66000.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis
          LMG 20546]
          Length = 185

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           ++++I + I ++ ++H L+   LA +AG+  ++ +  +   +      PS  S+ KI+ 
Sbjct: 1  MNNQEIGKNIVQLRKQHGLSQRELAERAGITHSAISSIENGKV-----SPSVSSLQKIVN 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
            + ++ +            +    E  L+
Sbjct: 56 VFSLSLSEFFTFEKPQSDEVKVVMTEDELV 85


>gi|271961986|ref|YP_003336182.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505161|gb|ACZ83439.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 189

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + I R+ E   ++ S LAR+AG+   + +  +        R P+ E+++ + A   
Sbjct: 24 DVGQRIRRLREERGISLSELARRAGVGKATLSGLENGT-----RNPTLETLWAVTAQLG 77


>gi|229593332|ref|YP_002875451.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|312963834|ref|ZP_07778305.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6]
 gi|229365198|emb|CAY53478.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|311281869|gb|EFQ60479.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6]
          Length = 182

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +           T+   K   L+                P+    +     P     
Sbjct: 57  SMVEFFSEEILQEIPTQIVYKANELIDISDGAVTMKLVGRAHPSRAIAFLNEIYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLTHEGEETGILVEG 134


>gi|218780466|ref|YP_002431784.1| XRE family transcriptional regulator [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761850|gb|ACL04316.1| transcriptional regulator, XRE family [Desulfatibacillum
          alkenivorans AK-01]
          Length = 115

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+    KKI + I  +   +NLT + LA   GL   S ++ +R        +PS +++ +
Sbjct: 1  MSGL-EKKIGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVT-----FPSVKTLAR 54

Query: 61 ILAATNETICQLLDLPF 77
          +  A   ++ Q  D   
Sbjct: 55 VAEALGSSLKQFFDFDE 71


>gi|156345367|ref|XP_001621343.1| hypothetical protein NEMVEDRAFT_v1g145237 [Nematostella vectensis]
 gi|156207159|gb|EDO29243.1| predicted protein [Nematostella vectensis]
          Length = 72

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  + +  SM+      GD+L+++  ++   GD ++ +   GD   K   +R  + 
Sbjct: 5   PQCTFLLRVRGDSMIGAGIFDGDLLVVDKYLRPQHGDIVVAEVD-GDFTCKRFWARYDQ- 62

Query: 193 IDLMSLNCCY 202
           + L + N  Y
Sbjct: 63  VMLRAENPTY 72


>gi|168239703|ref|ZP_02664761.1| protein SamA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194733785|ref|YP_002112883.1| protein SamA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|313116750|ref|YP_004032900.1| LexA-like protein [Edwardsiella tarda]
 gi|194709287|gb|ACF88510.1| protein SamA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287633|gb|EDY27025.1| protein SamA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|312192387|gb|ADQ43873.1| LexA-like protein [Edwardsiella tarda]
          Length = 141

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 95  FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                         FP+               +      +      +    SM  +    
Sbjct: 12  IVKIPLFTERCPAGFPSPAAN---YTESELDLNEYCIHRRHSTYFVRAIGNSMTDIGLYS 68

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
           GD+++++ A Q   GD ++     G+   K L+        L ++N  +P    +   ++
Sbjct: 69  GDLMVVDKAEQPRHGDIVI-AEIEGEFTVKRLLLTP--RPALQAMNPDFPSLYPDPETLQ 125

Query: 214 WIARI 218
               +
Sbjct: 126 IFGVV 130


>gi|254487954|ref|ZP_05101159.1| transcriptional Regulator, XRE family with Cupin sensor domain
           [Roseobacter sp. GAI101]
 gi|214044823|gb|EEB85461.1| transcriptional Regulator, XRE family with Cupin sensor domain
           [Roseobacter sp. GAI101]
          Length = 183

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 35/140 (25%), Gaps = 7/140 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + E   L+   LA KAGL   + +  ++         PS  S+  +L A   
Sbjct: 2   DIGHRLRTIREERGLSQRELAAKAGLTNGTISLIEKNKT-----SPSVASLKSLLDAIPI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125
           ++ +                +   +   P S              +         P    
Sbjct: 57  SMAEFFSPLEDAETPKVFYRQSEFIEISPSSEGQVSLRQLGNAEQHSLQVLHETYPPGAD 116

Query: 126 PHNGIYAIQTQDTRHKTQDT 145
               +     ++        
Sbjct: 117 TGPELLVHDGEEAGVVISGE 136


>gi|15615472|ref|NP_243775.1| hypothetical protein BH2909 [Bacillus halodurans C-125]
 gi|10175531|dbj|BAB06628.1| BH2909 [Bacillus halodurans C-125]
          Length = 189

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 27/181 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S K+I + + R+     +T   LA+K G+      + +R         P+  +++KI 
Sbjct: 5   MLS-KRIGQRLKRIRSDRGMTLDQLAKKTGVSKPMLGQIERGESN-----PTVSTLWKIA 58

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              + +                        +              V P  +  +    P 
Sbjct: 59  TGLHVSF--------------------TAFIEDEKPNVTVIKRDQVLPIIDGCDFQVFPL 98

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIV 181
                +  + I +      T  TS        + +I+    + V  GD + +  R   I 
Sbjct: 99  FPRSKDKPFEIFSVKLEAGTDHTSEGHAQGVHEFVIVEKGTLNVKIGDEVYVLERGDGIH 158

Query: 182 A 182
            
Sbjct: 159 F 159


>gi|325276799|ref|ZP_08142502.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324098071|gb|EGB96214.1| peptidase S24/S26 domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 101

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 136 QDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                K +  SM       GD+LI++   +   G  +++    GD   K ++ R  R + 
Sbjct: 8   NVYLVKVEGDSMQGAGIYTGDLLIVDRLAEPTSGSIIIVAQN-GDATCKRMVIR-DRQVV 65

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L+S N  +P   +   D   +  ++
Sbjct: 66  LISDNPKFPSRDIMEGDQFEVWGVV 90


>gi|149191757|ref|ZP_01869996.1| LexA repressor [Vibrio shilonii AK1]
 gi|148834399|gb|EDL51397.1| LexA repressor [Vibrio shilonii AK1]
          Length = 206

 Score = 56.7 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 61/214 (28%), Gaps = 34/214 (15%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +A++ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIDDVGMPPTRAEIAKELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KKAIEIIPGASRGIRILLEDAANEDAGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  + +  
Sbjct: 94  AQEHVEAHYQVDPSMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VAR 152

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              D+  K L  +   ++ L + N  +    V++
Sbjct: 153 VDDDVTVKRLERKGA-TVLLHAENEEFSPIEVDL 185


>gi|119471364|ref|ZP_01613836.1| transcriptional repressor for SOS response [Alteromonadales
           bacterium TW-7]
 gi|119445640|gb|EAW26924.1| transcriptional repressor for SOS response [Alteromonadales
           bacterium TW-7]
          Length = 205

 Score = 56.7 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 61/215 (28%), Gaps = 35/215 (16%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +    +I E I    +   + P  + +A+  G    +                + E
Sbjct: 1   MRPLTKRQAQILELIKVFIKDTGMPPTRAEIAQTLGFKSAN----------------AAE 44

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              K LA       +                + I L+        G    G    G+   
Sbjct: 45  EHLKALAKKGVIKMKPG------------ASRGIQLVEEEEPEQLGLPLIGRVAAGSPIL 92

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     + +      D   +    SM  +    GD+L ++       G  + +  
Sbjct: 93  AQEHVESHCKIDPLMFKPAADFLLRVNGMSMKDIGIMDGDLLAVHKTQVAENGQVV-VAR 151

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              D+  K +  + GR + L + N  +    V++ 
Sbjct: 152 VDDDVTVKRI-EKAGRQVLLHAENDEFAPIKVDLE 185


>gi|13095808|ref|NP_076698.1| repressor [Lactococcus phage bIL309]
 gi|15672420|ref|NP_266594.1| prophage pi1 protein 03 [Lactococcus lactis subsp. lactis Il1403]
 gi|12723316|gb|AAK04536.1|AE006281_2 prophage pi1 protein 03, transcriptional regulator [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12830997|gb|AAK08351.1|AF323670_3 repressor [Lactococcus phage bIL309]
          Length = 278

 Score = 56.7 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 68/269 (25%), Gaps = 58/269 (21%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------------------- 48
           ++ E ID   + +  T      K G   ++ +K  +                        
Sbjct: 5   RLPEMIDYFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDKMVNLFNTDPDTL 64

Query: 49  ----RNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE--------------- 89
                +   +   I KI +   E   +++    ++    + +EK+               
Sbjct: 65  MYGASDLSTTLSEINKISSQLEEPRQKVVLNTATNQLDEQNQEKKKESKVIPINKIPDDL 124

Query: 90  ----------------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-A 132
                             + Y P          G    G   + V   +   P    + +
Sbjct: 125 PPYISRKILENFVMPTNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLS 184

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGR 191
                        SM P    G  +++ +   V  G    ++         K +      
Sbjct: 185 SARDYYWLMVDGHSMEPKIPFGSYVLIEAVPDVTDGTIGAVLFQDDCQATLKKVYHEID- 243

Query: 192 SIDLMSLNCCYPVDTVEMSD-IEWIARIL 219
            + L+S+N  +        +    I + +
Sbjct: 244 CLRLVSINKEFKDQFATQDNPAAVIGQAV 272


>gi|294813544|ref|ZP_06772187.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326442049|ref|ZP_08216783.1| XRE family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326143|gb|EFG07786.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 244

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 5/137 (3%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +  ++   + R+     +T + LA   G+  ++ ++ +  G     R PS E +  I  
Sbjct: 36  RTLNEVGPRLKRLRAERGITLAALAETTGISKSTLSRLESGG-----RRPSLELLLPISQ 90

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A    + +L+  P           + I      P                       P  
Sbjct: 91  AYQVPLDELVGAPEVGDPRVRLTPRTIHGSTVVPLTRQPGPLQAFKMVVPVSRATPEPVT 150

Query: 124 RSPHNGIYAIQTQDTRH 140
              +  +Y +  +    
Sbjct: 151 HEGYEWLYVLAGRLRLV 167


>gi|269119864|ref|YP_003308041.1| phage repressor [Sebaldella termitidis ATCC 33386]
 gi|268613742|gb|ACZ08110.1| putative phage repressor [Sebaldella termitidis ATCC 33386]
          Length = 226

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 68/222 (30%), Gaps = 16/222 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLA---RKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
               +++ + I    E   L    +A   ++ G+   + +   R    GR +      + 
Sbjct: 1   MDKIERVTKKIRSRREELGLRLEDVANSLKRQGV-EITISGLHRIESGGRQK-LDANLLV 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +    +     +L        +    +++  +L    +             G       
Sbjct: 59  GLSNILDYNFFDMLGWKAPKENSNYSIKEKEKILVKIHTYDSS-------KAGRIDLENF 111

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPR 176
             E     + I     +    K +   M P + +GD+L++      N      ++++   
Sbjct: 112 TEEALMVEDEISNSVNEGIIIKIKGNFMQPHFYEGDVLLIEKEKFENWQELDRKIVLYEF 171

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            G+   + ++    +   +   N  Y    +    I +I R+
Sbjct: 172 DGETYIRKVLFENAKGYLIAFNNRLYENIEIN-EKITYIGRV 212


>gi|312965280|ref|ZP_07779513.1| repressor protein C2 [Escherichia coli 2362-75]
 gi|312289954|gb|EFR17841.1| repressor protein C2 [Escherichia coli 2362-75]
          Length = 120

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 11/95 (11%)

Query: 133 IQTQDTRHKTQDTSM-----LPLYRKGDILILNSA---IQVNCGDRLLIKPRTG-DIVAK 183
           +       + +  SM      P   +G I+I+       +   G  ++     G +   K
Sbjct: 21  VSEMAFALRVRGDSMTNPLGSPSIPEGSIVIVEPDIIDTECINGKIVVAHINGGQEATLK 80

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             +        L+ LN  Y        +   +  +
Sbjct: 81  KFVEDWPNRY-LVPLNPNYKTIEC-GENCRIVGLV 113


>gi|148550378|ref|YP_001270480.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148514436|gb|ABQ81296.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 199

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 19  DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 73

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           ++ +   +       T+   K   L+     
Sbjct: 74  SMVEFFSVELEPQSPTQIVYKAHELIDISDG 104


>gi|295697906|ref|YP_003602563.1| SOS mutagenesis and repair protein UmuD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295060018|gb|ADF64755.1| SOS mutagenesis and repair protein UmuD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295097799|emb|CBK86889.1| SOS response UmuD protein. Serine peptidase. MEROPS family S24
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 143

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           + V        H+      +     +    SM       GD+L+++SA +   GD ++  
Sbjct: 34  DYVE--SDLDLHDYCIRHPSATYYLRASGDSMSDGSLYNGDLLVVDSAEKPRHGDIVV-A 90

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              G+   K         + L  +N  +P    +  D++    +
Sbjct: 91  SVQGEFTVK--RLLLTPRLTLQPMNAAWPPIYPDPDDLDIFGVV 132


>gi|153952785|ref|YP_001393550.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853450|ref|YP_002470572.1| hypothetical protein CKR_0107 [Clostridium kluyveri NBRC 12016]
 gi|146345666|gb|EDK32202.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219567174|dbj|BAH05158.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 224

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 18/221 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I        ++   L +K G+     N+ +           S   I K+     +
Sbjct: 3   RVGEKIKSARIELGISQKLLGKKLGVSEKFINEVELGRKIA-----SQGIIDKLSKILGK 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-----------FPTGNKWN 116
            I  +           EK EK  P+           +               +      N
Sbjct: 58  NINDITMSFEEQAYEEEKNEKFSPVPKKEKIQVQDVWSEAFSSVLKKIPIYGYDINKIIN 117

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
              +P I +   G YA           +       + GD+ + +   ++       +   
Sbjct: 118 FKQLPIINNKVEG-YAQDKVIYLQIESNDMEGFRIQDGDLALAHITGEIENNSIC-LVEY 175

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            G    + +     + + L+S       +T+E+ D++ IA+
Sbjct: 176 GGKREVRQIKKMDNKKVLLISGKNSIRTETIEIKDLKIIAK 216


>gi|223038457|ref|ZP_03608751.1| conserved hypothetical protein [Campylobacter rectus RM3267]
 gi|222880314|gb|EEF15401.1| conserved hypothetical protein [Campylobacter rectus RM3267]
          Length = 148

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARI 218
            +   G   + +    +++ K    R      L+S N  Y    +E    IE + R+
Sbjct: 84  QKAIEGAIYVCRYD-NELLVKRFKKRP--HFALISDNRDYEPIKIEEDLSIEILGRV 137


>gi|120537133|ref|YP_957190.1| putative prophage repressor [Marinobacter aquaeolei VT8]
 gi|120326968|gb|ABM21275.1| UmuD protein. Serine peptidase. MEROPS family S24 [Marinobacter
           aquaeolei VT8]
          Length = 142

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +   +  S  +            +   +SM       GD+L+++ ++       ++  
Sbjct: 34  DYIE--KTLSLDDLCIRTPAATYFVRASGSSMERAGIHDGDVLVVDRSLPPGHRKIVIAS 91

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
              G+ V K L         L + +  YP  T+ E  ++E    +
Sbjct: 92  VD-GEFVCKRLDLSVPSRPVLRAESEDYPDITLREEDELEIFGVV 135


>gi|325272717|ref|ZP_08139070.1| DNA replication and repair protein [Pseudomonas sp. TJI-51]
 gi|324102163|gb|EGB99656.1| DNA replication and repair protein [Pseudomonas sp. TJI-51]
          Length = 142

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +    P        I A        + +  SM       G +L+++ +I    G  + + 
Sbjct: 33  DYYEAPLSLDERMNIRA--PHVWIVQVEGDSMRDAGIFDGSLLVVDRSISPTAGHIV-LA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILW 220
                 + K L       + L S N  Y   ++  S+   IE    + W
Sbjct: 90  YVDNQPLVKRLARSAAGWV-LESANPAYK--SIAPSEYGTIEVFGVVTW 135


>gi|302342128|ref|YP_003806657.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301638741|gb|ADK84063.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM
           2075]
          Length = 432

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + I  +  +  L+ + LA+  G+ P++ ++ +   I     +PS  ++ K+      
Sbjct: 252 DLGKRIKELRGKKGLSQTDLAKMVGVTPSTISQVESNHI-----YPSLPALIKMAEVL-- 304

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                      +  +      E        +           P G     +  P      
Sbjct: 305 ---------SVEIASFFNDGAEDRQRVVFSAEEAVEVKLVDMPAGAVRAQLLSPVDLDSK 355

Query: 128 NGIYAIQ 134
              Y I+
Sbjct: 356 TEPYIIE 362


>gi|149919002|ref|ZP_01907487.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149820155|gb|EDM79574.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 108

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + +++ E +  + +R  LT   LA  A +   S  + +          PS +++ K
Sbjct: 1   MEVMTREELGERLRTLRKRRGLTQEALAEAAEVSVDSVRRLENAAF-----SPSFDTLTK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
           +    N     L+   + +        + +P  +   + + 
Sbjct: 56  LAKGLNVPKVALITDHYDEEDDLAVMLRALPSPHKEVAVAM 96


>gi|26991944|ref|NP_747369.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24987072|gb|AAN70833.1|AE016728_2 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
 gi|313501243|gb|ADR62609.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          BIRD-1]
          Length = 182

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2  DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          ++ +   +       T+   K   L+     
Sbjct: 57 SMVEFFSVELEPQSPTQIVYKAHELIDISDG 87


>gi|237808604|ref|YP_002893044.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187]
 gi|237500865|gb|ACQ93458.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187]
          Length = 214

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 58/220 (26%), Gaps = 31/220 (14%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
             +   LT   LA   G+   + ++ +          P  +++ ++              
Sbjct: 2   RRKMFGLTMQALADYVGVSQPTVSQWESDLT-----LPKGQNMRRLEEILRTNSDW---- 52

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
                   +   + + +             S   P       +   ++        A ++
Sbjct: 53  --LTWGEGDPDARYVLVRPSTDEFKVIDSFSRQLPVITIAQALTWCDLSPDEQNKAASKS 110

Query: 136 QD---------TRHKTQDTSML-----PLYRKGDILILNSAIQVNCGD---RLLIKPRTG 178
                            + SM+        + G  L++    + N  +    ++      
Sbjct: 111 NIVSIATSKGGFILIMPNDSMVGPNNPRSLQAGCQLVVEPEFKPNELNEKVVVVAVEDAP 170

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             + +  I + G  + L S N  YP   +   +   I  +
Sbjct: 171 VAMVREFI-QDGPLVFLRSFNPSYP--ILNAVNFRVIGVV 207


>gi|104784313|ref|YP_610811.1| transcriptional regulator [Pseudomonas entomophila L48]
 gi|95113300|emb|CAK18028.1| putative transcriptional regulator [Pseudomonas entomophila L48]
          Length = 182

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +   +  +    T+   K   L+                P     +     P     
Sbjct: 57  SMVEFFSVELAPESPTQIVYKAHELIDISDGAVTMKLVGKSHPNRAIAFLNEVYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +     ++T    + 
Sbjct: 117 GEEMLTHDGEETGILLEG 134


>gi|282879409|ref|ZP_06288150.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
 gi|281298453|gb|EFA90881.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
          Length = 241

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 30/235 (12%)

Query: 10  WEAIDRMAER------HNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            E +DR+ +         +  T   +A K G   T+ + +      G+ R+ +   + + 
Sbjct: 1   MERVDRLQKAFEYLRYKGIANTQVDVANKMGRQRTNVSSAFN----GKERYLTDSFLKEF 56

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLY---------FPPSGSGGFFDSGVFPTG 112
                      L     +    E    E+  +                           G
Sbjct: 57  CDTFGVFSFDWLLTGEGNMLKDEPHVSEVTEVKSLSNLKSKEVKKDEQMVNLYDFEASAG 116

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCG 168
            +               I  +   D        SM PL + GDI++          +  G
Sbjct: 117 LRSLLDNNHANVIDSIRIPNLPKCDGAIHIVGDSMYPLLKSGDIVLYKEMPVDMQHLFYG 176

Query: 169 DRL---LIKPRTGDIVAKVLISRRGRS--IDLMSLNCCYPVDTVEMSDIEWIARI 218
           +      +      +V K +         + L+S N  +    ++   +  +A +
Sbjct: 177 EMYLISYLIEGDAYVVVKYINRSPQGEPYVTLVSQNPHHADRDIDFRTVNALALV 231


>gi|145218938|ref|YP_001129647.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205102|gb|ABP36145.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides
           DSM 265]
          Length = 210

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 18/154 (11%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++++I   I  +  ++ L+   LAR+  L  T+  K +    E R R      + K   
Sbjct: 1   MTNEQIGLRIKELRSQNGLSQEELARRVELPRTAVTKIESGSQELRFRE-----LEKFAE 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A                  +   EK           S  F D+    T            
Sbjct: 56  ALG-------------TPISALVEKPHESPASVMCMSSTFMDNSFMMTSESSEEYKASNT 102

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
           R     ++ +Q      +  D  +       D L
Sbjct: 103 RLRTMLLFILQRTAGNPEMDDRRIADTILTADRL 136


>gi|330964277|gb|EGH64537.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 182

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +          + +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEETVPENSAQVVYKASELIDISDGAMTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLVHEGEETGILVEG 134


>gi|153954474|ref|YP_001395239.1| phage transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347355|gb|EDK33891.1| Predicted phage transcriptional regulator [Clostridium kluyveri
          DSM 555]
          Length = 268

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I R+  +  LT   LA+   + PT+    +        R PS +++ KI      
Sbjct: 2  NIGENIKRIRTQKGLTQKELAKSIHVTPTTIQNYENN-----RRKPSVDTLDKIAKVLGV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          TI               +  K +    +
Sbjct: 57 TINSFTFNYNFCYELLMRLIKVLNTENY 84


>gi|224143138|ref|XP_002335997.1| predicted protein [Populus trichocarpa]
 gi|222837887|gb|EEE76252.1| predicted protein [Populus trichocarpa]
          Length = 194

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 14/185 (7%)

Query: 47  EGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK-------KEKEIPLLYFPPSG 99
           + R+R    + + K+ A            P +    +             + L +  P+ 
Sbjct: 2   KSRHRPIKEDFVEKLEALPGYAGWFTAPSPDTPAPVSMPASDRDDIPPGYVRLQHLSPTP 61

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
           S G       P       + V E             +         SMLP  R  D++ +
Sbjct: 62  SMGPGRGMSEPV-QIIRHLDVLESWVRQKVGSTNYDRIKILTGIGQSMLPTIRDHDLVFV 120

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN----CCYPVDTVE--MSDIE 213
           +   +      + +      ++ K  +     ++ L S N           +      I 
Sbjct: 121 DMGQKSIDVPGIYVLDVCDRLLLKRALIHSTGTLVLRSDNAEEFPDEERIDLRTAADSIN 180

Query: 214 WIARI 218
              R+
Sbjct: 181 VAGRV 185


>gi|217970467|ref|YP_002355701.1| peptidase S24 and S26 domain protein [Thauera sp. MZ1T]
 gi|217507794|gb|ACK54805.1| peptidase S24 and S26 domain protein [Thauera sp. MZ1T]
          Length = 151

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 128 NGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
             +            +  SM      +GD+L+++ +I+   G  ++     G+ + K L 
Sbjct: 52  EYLVRNPISTFFFTVKGDSMQEADIFEGDVLVVDRSIKPVHGHLVVAFVN-GERLVKRL- 109

Query: 187 SRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARILWA 221
           S R  S+ L++ +  YP  T+ E +D+E     +W 
Sbjct: 110 SIRVGSVMLLAGHPKYPPLTLKERNDLE-----VWV 140


>gi|33240210|ref|NP_875152.1| family S24 peptidase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237737|gb|AAP99804.1| UmuD ortholog, peptidase family S24 [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 143

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            V +    +  +          + +  SM       GD+LI++ ++    G+ ++     
Sbjct: 33  YVEDNIDLNEELIHRPASTFFLRVKGDSMSNAGILDGDLLIVDRSLDAKPGNIVVAILD- 91

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           G    K L  R+     L + N  YP+  +  
Sbjct: 92  GAFTLKKLTYRKNIPY-LEAANHNYPIIDLRR 122


>gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator [Vibrio orientalis CIP 102891]
 gi|260938714|gb|EEX94702.1| putrescine utilization regulator [Vibrio orientalis CIP 102891]
          Length = 185

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +++I + I  + + H L+   LA +AG+  ++ +  +   +      PS  S+ KI+ 
Sbjct: 1  MDNQEIGKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKV-----SPSVSSLQKIVN 55

Query: 64 ATNETICQLLDLPFSDGRT 82
            + ++ +           
Sbjct: 56 VFSLSLSEFFTFEQPQSEE 74


>gi|330866552|gb|EGH01261.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330895723|gb|EGH28013.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330943309|gb|EGH45692.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952098|gb|EGH52358.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae Cit 7]
 gi|330972181|gb|EGH72247.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 182

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLVHEGEETGILVEG 134


>gi|289674441|ref|ZP_06495331.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. syringae FF5]
          Length = 182

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLVHEGEETGILVEG 134


>gi|302531671|ref|ZP_07284013.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4]
 gi|302440566|gb|EFL12382.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4]
          Length = 193

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 5/133 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I   + R  +   ++ + L+R  G+  ++ ++ +        R PS E +  I AA  
Sbjct: 12  EQIAPRLRRARDHRGVSLAELSRSTGISTSTLSRLESGQ-----RKPSLELLLPITAALG 66

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +++  P        ++  +       P                  +    P     
Sbjct: 67  IPFDEIVAAPRIVDPRVPQQAAKRDGRVLIPLSRHQGELRAYKQIIPAGDVEPHPRSHDG 126

Query: 127 HNGIYAIQTQDTR 139
           H  +Y ++ +   
Sbjct: 127 HEWLYVLRGRLRV 139


>gi|66043508|ref|YP_233349.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. syringae B728a]
 gi|63254215|gb|AAY35311.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a]
          Length = 199

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 19  DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 74  SMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 134 GEEMLVHEGEETGILVEG 151


>gi|325273200|ref|ZP_08139486.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324101665|gb|EGB99225.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 182

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2  DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          ++ +   +        +   K   L+     
Sbjct: 57 SMVEFFSVELEAQSPAQIVYKAHELIDISDG 87


>gi|170718802|ref|YP_001783983.1| phage repressor [Haemophilus somnus 2336]
 gi|168826931|gb|ACA32302.1| putative phage repressor [Haemophilus somnus 2336]
          Length = 81

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           M P  + G+ +I++ + +     ++ +    G ++ K +       ++L+S N  Y    
Sbjct: 1   MYPTLKDGEEIIVDRSKRNLVDGKIFVLNNDGSMLVKKVQ-LTYDGVELISDNPTYRPLK 59

Query: 207 VEMSD---IEWIARIL 219
           +E  +   +  I +++
Sbjct: 60  LEAEEANSLIVIGQVV 75


>gi|167036306|ref|YP_001671537.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862794|gb|ABZ01202.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 182

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2  DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          ++ +   +       T+   K   L+     
Sbjct: 57 SMVEFFSVELEPESPTQIVYKAHELIDISDG 87


>gi|294778750|ref|ZP_06744169.1| peptidase S24-like protein [Bacteroides vulgatus PC510]
 gi|294447406|gb|EFG15987.1| peptidase S24-like protein [Bacteroides vulgatus PC510]
          Length = 224

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 13/215 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++     +T   +A   G++ T+  +      +   R  S   I       +      
Sbjct: 4   LRQIIRNQGVTNKVIADALGIESTNIGRY----DDLSKRRLSELIIISKALDMSLGDLVQ 59

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
             +             +   +                    K   V   +       I  
Sbjct: 60  QAMADEIELGDVTIINKPKYIERIDEEGIINLYDIEAAANLKSLLVNKDQNILGKISIPN 119

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRL-LIKPRTGD--IVAKVL 185
           I   D     +  SM PL + GDI+           +  G+   +     G+  +  K +
Sbjct: 120 IPKCDGAVYVKGDSMYPLLKSGDIIAYKEVPVEIQHIFYGEMYLVSIDVEGEEYLTVKYI 179

Query: 186 --ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
               + G  I L+S N  +      ++ ++ +A +
Sbjct: 180 NQSEKGGDWIKLVSYNQHHQPKDFPLASVKALALV 214


>gi|221199771|ref|ZP_03572814.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M]
 gi|221208624|ref|ZP_03581624.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2]
 gi|221171435|gb|EEE03882.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2]
 gi|221180010|gb|EEE12414.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M]
          Length = 189

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 61/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 10  EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + R+   +  E+P L                        +  P      
Sbjct: 65  SLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGAGVKDRNMCIMREIYQP-HADTG 123

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             + A    +          L +   G   +L+       GD    + R          +
Sbjct: 124 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 171

Query: 188 RRGRSI-DLMSLNC 200
                I +++S N 
Sbjct: 172 PSADQICEVVSANS 185


>gi|238020422|ref|ZP_04600848.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC 51147]
 gi|237867402|gb|EEP68408.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC 51147]
          Length = 198

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 28/205 (13%)

Query: 16  MAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
             ++ NLT   LA   G     S +  +    +     P+ + + KI    N  +     
Sbjct: 12  ARKQANLTQEELAEAIGFSGKGSVSAIENGRNK-----PTFDIMVKISEVCNYPLPYQNQ 66

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
           +  ++    +        + +                 + +  +     +          
Sbjct: 67  VINNNATHIQVGGNNFGEVSYSNITENN----------HAFINLDNITQQDFIKP----- 111

Query: 135 TQDTRHKTQ-DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 K   +        K D+L +N  I  N G+ +L+    G  +   L        
Sbjct: 112 ---FIVKVPNNDLHSEGIFKDDMLTINPNITANHGNFVLVLSTYGRGLIAKLFIDLKNQY 168

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARI 218
            L   N   P   +   D   I  +
Sbjct: 169 ALK-HNESNP--ELMPDDARIIGVV 190


>gi|209916853|ref|YP_002291173.1| UV protection protein ImpA [Escherichia coli SE11]
 gi|209915279|dbj|BAG80351.1| UV protection protein ImpA [Escherichia coli SE11]
          Length = 145

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRSAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134


>gi|330957317|gb|EGH57577.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 182

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 47/138 (34%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +          + +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLVHEGEETGILVEG 134


>gi|91780754|ref|YP_555961.1| transcriptional regulator [Burkholderia xenovorans LB400]
 gi|91693414|gb|ABE36611.1| Transcriptional regulator, XRE family with Cupin sensor domain
           [Burkholderia xenovorans LB400]
          Length = 204

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 14/128 (10%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             SH  +   +  +     L+ + LA +AG+   + ++ +R       R    E + + L
Sbjct: 13  DLSHGDVGARLRALRVAQGLSVNELAMRAGVSVGTVSQVERNKANPSVRI--LERLRQAL 70

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLY------------FPPSGSGGFFDSGVFP 110
                 + +  D           ++     L+             P           + P
Sbjct: 71  EVPLTALLEEDDAVSDPITGDFVRKAAERPLFEVGKNGMQKELLSPHGDHDLQMMIIMLP 130

Query: 111 TGNKWNTV 118
            G+    V
Sbjct: 131 AGSGSEEV 138


>gi|237797760|ref|ZP_04586221.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020610|gb|EGI00667.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 182

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 58/192 (30%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +   + ++T    +    L        ++ +    +  GD    +            
Sbjct: 117 GEEMLVHEGEETGILVEGRLEL--------VVGHDTYVLEAGDSYYFESTRPH----RFR 164

Query: 187 SRRGRSIDLMSL 198
           +    +  L+S 
Sbjct: 165 NPFDVAARLISA 176


>gi|291287634|ref|YP_003504450.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884794|gb|ADD68494.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 191

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 63/216 (29%), Gaps = 33/216 (15%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +KKI + +  + +  +++ +   RK G +  S  + +   +      P +  I  I  
Sbjct: 1   MQYKKIADRLKELRKALDMSQTDFGRKIGKNYHSVMRWELGRV-----LPPSNVIVHICE 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           + + +   L          ++    E     +                    +++ +P+ 
Sbjct: 56  SFDVSPDWLKSGKGKMFLNSDPYIAEAETAPYDFQQEKISLQP---------DSIFMPDG 106

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            +                   +   P   + DI++ N A  V  GD + +          
Sbjct: 107 AAAMKAA--------------SGSTPPVSENDIIVYNPACDV-DGDGMYLIEDNYGDCYV 151

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               +  R     S    YP      + +    +++
Sbjct: 152 RFYKKADRLF--HSKRPDYPDVDYSQAKVT--GKVI 183


>gi|289624831|ref|ZP_06457785.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647732|ref|ZP_06479075.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 199

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 19  DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 74  SMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 134 GEEMLVHEGEETGILVEG 151


>gi|295085879|emb|CBK67402.1| Peptidase S24-like./Bacteriophage CI repressor helix-turn-helix
           domain. [Bacteroides xylanisolvens XB1A]
          Length = 237

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 56/209 (26%), Gaps = 20/209 (9%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA   G+   + +         RN       + K     +     L            
Sbjct: 24  SELAEYLGVSRATVSNW-----GARNSIDFRLLLDKFGDKVDYNWLLLGKGNPKHQPRYC 78

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------ 138
           + E     +    +            T          +    +   YA+           
Sbjct: 79  ESELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANLKTLFTNKKQYALGKILIPNISVC 138

Query: 139 --RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLIS-RR 189
                    SM P+ + GDI+    ++S   V  G+  L+         +  K +    +
Sbjct: 139 DGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSFMIDGDEYLAVKYVNRSDK 198

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              + L+S N  +    +  + I  +A +
Sbjct: 199 EGYLKLVSYNTHHEPMDIPFASINAMAIV 227


>gi|117617483|ref|YP_854772.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117558890|gb|ABK35838.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 180

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +  +  L+   LA+++G+     ++ ++  +      PS  S+ K+L     
Sbjct: 2   DIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQV-----SPSVASLRKVLEGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++                +  ++P L   P        S           + +P      
Sbjct: 57  SLATFFTDETEMDSEVIFRAADMPDLGTHPISYRLVGHSRANRAIGMMQEI-LPPGADTG 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
           + + + + ++     Q    + +  +  +L          GD      RT         +
Sbjct: 116 DDMLSHEGEECGIVIQGQVEVTVGEQVYLLT--------PGDGYYFDSRTPH----RFRN 163

Query: 188 RRGRSIDLMSLN 199
                  L+S N
Sbjct: 164 VDEHECVLISAN 175


>gi|302184902|ref|ZP_07261575.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 182

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLVHEGEETGILVEG 134


>gi|291548981|emb|CBL25243.1| Predicted transcriptional regulator [Ruminococcus torques L2-14]
 gi|295110023|emb|CBL23976.1| Predicted transcriptional regulator [Ruminococcus obeum A2-162]
          Length = 211

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  + +   +    LA K G++  S +K +R        +P+ +++ KI+     T
Sbjct: 11  LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65

Query: 69  ICQLLDLPFSDGRTTEKKE-KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             +LL   +      EK+  + + +     +          F +  +W    +
Sbjct: 66  PNELLSGEWKYVNQAEKEVCQFLRIEERLNAELKHGHYDNFFDSEEEWLEYEL 118


>gi|255524012|ref|ZP_05390974.1| transcriptional regulator, XRE family [Clostridium carboxidivorans
           P7]
 gi|296186870|ref|ZP_06855271.1| helix-turn-helix domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255512299|gb|EET88577.1| transcriptional regulator, XRE family [Clostridium carboxidivorans
           P7]
 gi|296048584|gb|EFG88017.1| helix-turn-helix domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 222

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 8/215 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I  +     +T   L +K G++ +  N+ +             + I K+L     
Sbjct: 3   RVGEKIKNIRNSIGMTQKQLGKKLGVNESFVNEVENGRKI--INQNLIDRISKVLGKDIN 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPE-I 123
            I    +    +    +K              +  F           ++    V   +  
Sbjct: 61  DITMSFEEQVFEEEKDKKYSAAPKKEAVKDVWNEAFGSVLKNIPIYGYDLQKAVSFKQLP 120

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +      Q +    + +D  ML     KGD+    S  ++       +       V 
Sbjct: 121 LINNKVEGHSQDKVFYLQIEDDDMLGFRIAKGDLAFAYSTHEIENNSIC-LIEHGSKRVI 179

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           + +       + L+S    +  +T E+ +I  IA+
Sbjct: 180 RQIKRLDNNKVLLISNKGSFRTETAEIKEINIIAK 214


>gi|330876473|gb|EGH10622.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 182

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +          + +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLVHEGEETGILVEG 134


>gi|218779224|ref|YP_002430542.1| XRE family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760608|gb|ACL03074.1| transcriptional regulator, XRE family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 433

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 50/166 (30%), Gaps = 11/166 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   I ++  +  L+   +A+  G+  ++ ++ +          P    + +IL  +  
Sbjct: 253 DLGTRIKQLRVKKGLSQVQMAKMVGVTASTISQVEN--NSIYPSIPGLLKMAEILNVSPG 310

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSP 126
            +        S       +   + L             + +   GN     + +   ++ 
Sbjct: 311 YLFSSDFEKRSQIVFPSGQASAVTLANLSEYEGSVKMLTPLDFEGNAEPFMIEIEPEQTV 370

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
               +A + Q+  +  +          GD +      +   GD + 
Sbjct: 371 SGHFFAHRGQEMGYVARG---ALEISFGDEI-----HKAKSGDLVY 408


>gi|218529001|ref|YP_002419817.1| XRE family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218521304|gb|ACK81889.1| transcriptional regulator, XRE family [Methylobacterium
           chloromethanicum CM4]
          Length = 228

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 41/167 (24%), Gaps = 1/167 (0%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S   I   +     +   +   LA  A +  T+ +K +    +     P       + 
Sbjct: 1   MVSTTSIGSTVRDARIKRGWSQQQLAEAARVSQTTVDKIENGITKKSRFLPEIFKALGLD 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A         +        +  + ++  +  F             +        +   +
Sbjct: 61  LADVVLHGGSEESSLRSLDPSRNRMRKRSVRAFSQKSDLIKVFFPQYVDNKGVFNIDFSK 120

Query: 123 -IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
             + P   I                + P    GDI   +S + V  G
Sbjct: 121 WDKVPRPRILDNDRDACAICVTHHYLAPELEIGDIAFFHSQLPVQVG 167


>gi|221215602|ref|ZP_03588565.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1]
 gi|221164590|gb|EED97073.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1]
          Length = 189

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 10  EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + R+   +  E+P L                        V  P      
Sbjct: 65  SLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGAGVKDRNMCIMREVYQP-HADTG 123

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             + A    +          L +   G   +L+       GD    + R          +
Sbjct: 124 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 171

Query: 188 RRGRSI-DLMSLNC 200
                I +++S N 
Sbjct: 172 PSADQICEVVSANS 185


>gi|161526154|ref|YP_001581166.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|189349130|ref|YP_001944758.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|160343583|gb|ABX16669.1| transcriptional regulator, XRE family [Burkholderia multivorans
           ATCC 17616]
 gi|189333152|dbj|BAG42222.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
          Length = 183

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + R+   +  E+P L                        V  P      
Sbjct: 59  SLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGAGVKDRNMCIMREVYQP-HADTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             + A    +          L +   G   +L+       GD    + R          +
Sbjct: 118 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                I +++S N 
Sbjct: 166 PSADQICEVVSANS 179


>gi|71734605|ref|YP_274103.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555158|gb|AAZ34369.1| ultraviolet light resistance protein RulA, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 147

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M     R GD+L+++ +     GD ++        + + L   RG  
Sbjct: 45  EPHVYLARVEDEGMQGSGMRTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDV 102

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S +  YP   V +  D+  +  +
Sbjct: 103 VILKSEHPDYPPLHVTDHDDLIILGVV 129


>gi|119775778|ref|YP_928518.1| XRE family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119768278|gb|ABM00849.1| putative transcriptional regulator, XRE family [Shewanella
           amazonensis SB2B]
          Length = 182

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+LA    
Sbjct: 2   DIGASLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLAGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++ +   +  S     +   +   LL               +P           P     
Sbjct: 57  SLVEFFSIGDSASAEQKIVYRADELLDIGTGPLEFKLIGRDYPNRAMSVMSEIYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +     ++     + 
Sbjct: 117 GEEMLKHVGEEAALVIEG 134


>gi|168485021|ref|ZP_02709959.1| cI repressor [Streptococcus pneumoniae CDC1873-00]
 gi|172041867|gb|EDT49913.1| cI repressor [Streptococcus pneumoniae CDC1873-00]
          Length = 255

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 63/256 (24%), Gaps = 44/256 (17%)

Query: 1   MTSFSHKKIWEA------IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-------- 46
           M   S + I         ++ +     +    L    G+  ++     +           
Sbjct: 1   MAKNSPQDIENREYFSNKLNELMNAKAVRQIDLHNALGIPKSTLTGYVKGRSLPTAGNLQ 60

Query: 47  -------------EGRNRWPS-----TESIFKILAATNETICQLLDLPFSDGRTTEKKEK 88
                        + R   PS     TE I  I         +            +K E 
Sbjct: 61  KLADFFGVLKSTLDPRFASPSAPATITEKITLIADQLTPPRQEKALTYLKKQLLEQKNEN 120

Query: 89  ---EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRH-KTQD 144
              E  +       S      GV   GN                   I            
Sbjct: 121 IVSENIISLDDYRESKTLPVIGVVTAGNGITQDDN-LNIEKCFYTDEIPDDYDAIAYVVG 179

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
            SM P  + GD L + +  QV+     + +   G    K L  +      L SLN     
Sbjct: 180 NSMEPKIKNGDYLFIKNTPQVDYNTIGIFQVD-GANYVKKL-RQG----YLESLNPDCAD 233

Query: 205 DTVEMS-DIEWIARIL 219
             ++   DI  I  ++
Sbjct: 234 IQLDEDNDIRTIGEVV 249


>gi|297208786|ref|ZP_06925210.1| bifunctional S24 family peptidase/transcriptional regulator
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|296886574|gb|EFH25483.1| bifunctional S24 family peptidase/transcriptional regulator
           [Staphylococcus aureus subsp. aureus ATCC 51811]
          Length = 252

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 65/255 (25%), Gaps = 48/255 (18%)

Query: 6   HKKIWEAIDRMAERHNLTPSGL-------ARKAGLD--PTSFNKSKRFGIEGRNRWPSTE 56
            +K+   +  + +  NL    +        +K G+    ++ ++                
Sbjct: 2   REKVSNRLKHIMKIRNLKQVDIINKSKPYQKKLGISLSKSTLSQYINDVQS--PDQDRIY 59

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF------- 109
            + K L      +       +       + E  +  +    S         V        
Sbjct: 60  LLSKTLNVGEAWLMGYDVDSYRVPDEERQDETIMSKINNIFSQLTPPRQENVLNYANEQL 119

Query: 110 ------------------------PTGNKWNTVGVPEIRSPHNGIYAIQT---QDTRHKT 142
                                    TG         +I          +T    D     
Sbjct: 120 EEQNKVTSIDGYKESKLVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILV 179

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P+ ++G    +     +  G   L+    G  + K +       I+L+SLN  Y
Sbjct: 180 NGDSMEPMLKQGTYAFIKKEDSIKDGTIALVVLD-GVSLIKRVDICED-YINLVSLNPKY 237

Query: 203 PVDTV-EMSDIEWIA 216
               V   SDI+ + 
Sbjct: 238 DDIKVASFSDIKVMG 252


>gi|301382555|ref|ZP_07230973.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302063078|ref|ZP_07254619.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40]
          Length = 182

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +          + +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 117 GEEMLIHEGEETGILVEG 134


>gi|213970668|ref|ZP_03398793.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|213924502|gb|EEB58072.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
          Length = 198

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 18  DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 72

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +          + +   K   L+     + +              + T   P     
Sbjct: 73  SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 132

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 133 GEEMLIHEGEETGILVEG 150


>gi|156933786|ref|YP_001437702.1| hypothetical protein ESA_01612 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532040|gb|ABU76866.1| hypothetical protein ESA_01612 [Cronobacter sakazakii ATCC BAA-894]
          Length = 201

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 58/225 (25%), Gaps = 41/225 (18%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T+ S       ++        + + LA  AG+   +  K          R  S+  I  +
Sbjct: 3   TTLSQ-----RLEIAMTAGGFSQASLAEAAGVSQPTVWKIVSG------RTQSSAKIVDL 51

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             A       L     S      +      ++Y       G     ++    K   + V 
Sbjct: 52  AKALGVRPEWLAHGVGSMKSEQVETSNASSIVY------EGTIALPLYDESEKQIGLTVV 105

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                H    A +           +  P   +G  ++++S       D +  K       
Sbjct: 106 PDAINHEKSRAYKLNY-------ETGFPELPQGCTIVVDSEETPVNNDFVYAKINGKSSA 158

Query: 182 AKVLIS-------RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            + L              + L+ +             +E +  I+
Sbjct: 159 YRYLTRGPQNYLDVGDSRLGLVPI----------DERVEILGVIV 193


>gi|28867345|ref|NP_789964.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|302133575|ref|ZP_07259565.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28850579|gb|AAO53659.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331018535|gb|EGH98591.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 199

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 19  DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +          + +   K   L+     + +              + T   P     
Sbjct: 74  SMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++T    + 
Sbjct: 134 GEEMLIHEGEETGILVEG 151


>gi|149188518|ref|ZP_01866811.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1]
 gi|148837736|gb|EDL54680.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1]
          Length = 185

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I ++ +   L+   LA KAG+  ++ +  +   +      PS  S+ KI+   + 
Sbjct: 5  QIGKNIAQLRKERGLSQRELAEKAGITHSAISSIENAKV-----SPSVSSLQKIVNVFSL 59

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          ++ +   L   + +  +   K   L+  
Sbjct: 60 SLSEFFTLEQQENKEIKVVVKPEDLIEI 87


>gi|150005927|ref|YP_001300671.1| putative SOS-response transcriptional repressor [Bacteroides
           vulgatus ATCC 8482]
 gi|149934351|gb|ABR41049.1| putative SOS-response transcriptional repressor [Bacteroides
           vulgatus ATCC 8482]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  + Q  SM       GDI+I++ + +     ++ +    G+   K +  +    
Sbjct: 131 PDSSYLIRVQGRSMIEAGVNDGDIIIVDKSERNPTEKQIAVCELNGEYTLKRVCKKE-GI 189

Query: 193 IDLMSLNCCYPVD-TVEMSDIEWIARI 218
           + L+  N  YP    ++  D      +
Sbjct: 190 LWLVPANPEYPEIKIIDGDDFSVWGVV 216


>gi|78186413|ref|YP_374456.1| XRE family transcriptional regulator [Chlorobium luteolum DSM
          273]
 gi|78166315|gb|ABB23413.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM
          273]
          Length = 205

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + + I + I  +  +  L+   LAR+  +  T+  K +    E R R      + K   
Sbjct: 1  MTEENIGQRIKELRGQKGLSQEELARRIAMPRTAVTKIESGSQEVRFRE-----LAKFAE 55

Query: 64 ATNET 68
          A   +
Sbjct: 56 ALGIS 60


>gi|193214608|ref|YP_001995807.1| peptidase S24 and S26 domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088085|gb|ACF13360.1| peptidase S24 and S26 domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 251

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 10/133 (7%)

Query: 89  EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
           E  ++  P           V  +      + +P +   H        +    +    SM+
Sbjct: 120 EDAMVEIPVFMHRVSAGPAVASSSEIEEYIKLPTVLLKH------PKRSYAVRASGNSMV 173

Query: 149 PL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
                 GD+LI++    +     ++     G+   K L+      + L   N  Y    +
Sbjct: 174 GAGIHSGDLLIVDQEAAIKHKCIVI-ASINGEQTVKRLL-IEDGELVLAPENSHYQSTPI 231

Query: 208 EMS-DIEWIARIL 219
               +   +  ++
Sbjct: 232 TKEMNFSILGVVM 244


>gi|182676970|ref|YP_001831117.1| XRE family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636600|gb|ACB97373.1| transcriptional regulator, XRE family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 217

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 24/198 (12%)

Query: 8   KIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++  + R  +     + +  AR  G +  ++   +        R    E   K    + 
Sbjct: 2   ELFHRLRRARKNAGFPSATEAARAFGWNANTYRSHENGER--GVRMAMAERYAKAFRVSV 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +   +  P +             +                 P G+       P     
Sbjct: 60  PWLLTGMPHPDARC-----------VACLAGRVVAQGRIETHRPGGS-------PLSCKN 101

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRTGDIVAK 183
               Y +       +     + P Y  GD+++       +Q   G    +K   G I  K
Sbjct: 102 IMLPYPVPEGALVFEITGDHLWPRYESGDVVVCWKPARTLQEADGWEAAVKLADGQIYLK 161

Query: 184 VLISRRGRSIDLMSLNCC 201
            +  R G   DL+S N  
Sbjct: 162 TVRYREGHQADLVSHNSA 179


>gi|320322230|gb|EFW78326.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331879|gb|EFW87817.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 199

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 19  DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 74  SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +     ++T    + 
Sbjct: 134 GEEMLVHDGEETGILVEG 151


>gi|71737818|ref|YP_272531.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558371|gb|AAZ37582.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|330873076|gb|EGH07225.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330986843|gb|EGH84946.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009416|gb|EGH89472.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 182

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +     ++T    + 
Sbjct: 117 GEEMLVHDGEETGILVEG 134


>gi|238852892|ref|ZP_04643295.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4]
 gi|238834484|gb|EEQ26718.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4]
          Length = 213

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++ E ++ + ++  +T   LA K G+   + N  +R   +     PS +++  +  A 
Sbjct: 16 RERVKENLNELLKKRGMTQKELAEKTGISYATINNYRRAYAQSSL--PSKKNLLAMAKAL 73

Query: 66 NETICQLLDLP 76
          N    ++    
Sbjct: 74 NCEPDEIDPSY 84


>gi|258406641|ref|YP_003199382.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
          DSM 5692]
 gi|257798868|gb|ACV69804.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
          DSM 5692]
          Length = 76

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     +++ + I    ++  L+   LA K G D T  +  +R       R PS  ++ K
Sbjct: 2  MKPL--EELGQEIKSRRKQLGLSQEKLADKCGFDRTYISMVERG-----KRNPSLLNLLK 54

Query: 61 ILAATNETICQ 71
          I      ++ +
Sbjct: 55 IAKGLEASVSE 65


>gi|21230716|ref|NP_636633.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|188992439|ref|YP_001904449.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. B100]
 gi|21112308|gb|AAM40557.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|167734199|emb|CAP52407.1| transcriptional regulator [Xanthomonas campestris pv. campestris]
          Length = 460

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+ GL P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRP 50


>gi|293397071|ref|ZP_06641345.1| XRE family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291420542|gb|EFE93797.1| XRE family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 189

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 47/137 (34%), Gaps = 7/137 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESIFK 60
           +++ + +  + ++   +   LA++ G+   + ++ +R          +T       ++ +
Sbjct: 10  QRLAQRLVALRQQRGWSLEALAQQTGISRATLSRIERMETSPTASLLNTLCAAYGLTMSR 69

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L+  +    +LL                   +  P +     F  G   +G +      
Sbjct: 70  LLSELDNEPPELLSRQQQPVWVDHASGFHRRSVSPPTALYQAEFIEGTLQSGARIEY-DA 128

Query: 121 PEIRSPHNGIYAIQTQD 137
           P I    + ++ I  + 
Sbjct: 129 PSIHGLEHHLWMIDGEL 145


>gi|257481782|ref|ZP_05635823.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 199

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 19  DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 73

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 74  SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 133

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +     ++T    + 
Sbjct: 134 GEEMLVHDGEETGILVEG 151


>gi|189468069|ref|ZP_03016854.1| hypothetical protein BACINT_04463 [Bacteroides intestinalis DSM
           17393]
 gi|189436333|gb|EDV05318.1| hypothetical protein BACINT_04463 [Bacteroides intestinalis DSM
           17393]
          Length = 250

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 59/210 (28%), Gaps = 19/210 (9%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           T + LA   G+  ++ +                  + K+       +      P    + 
Sbjct: 36  TDADLAAYLGVSRSTLSNWIARNSTDFP-----LLLSKMKDVDYNWLLLGKGSPVYQAKL 90

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-------AIQT 135
              +     +       +            +      +  + +  +          +I  
Sbjct: 91  CNSEYARGEVEIVHNPKTPDLVGDRSVALYDITAAANLKTLLANKHQYVVGKIQIPSIPL 150

Query: 136 QDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGD---IVAKVLISRR 189
            D        SM P+ + GDI+    ++S   V  G+  L+         +  K +    
Sbjct: 151 CDGALYISGDSMYPILKSGDIVGFKEISSFSNVIYGEMYLVSFNIDGDEYLAVKYVNRSE 210

Query: 190 -GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
               I L+S N  +    V  + I+ +A +
Sbjct: 211 IDGCIKLVSYNPHHEPMDVPFAAIQAMAIV 240


>gi|152985210|ref|YP_001351391.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960368|gb|ABR82393.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 182

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 50/167 (29%), Gaps = 14/167 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +   L       T+   K   L+                P+    +     P     
Sbjct: 57  SLVEFFSLDLEQDSHTQVVYKADELIDISSGAVSMRLVGKAHPSRAIAFLDETYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
              +   + ++          L        ++ +    +  GD    
Sbjct: 117 GEEMLNHEGEEAGVLVDGRLEL--------IVGSETYVLERGDSYYF 155


>gi|153835210|ref|ZP_01987877.1| repressor protein c2 [Vibrio harveyi HY01]
 gi|148868320|gb|EDL67448.1| repressor protein c2 [Vibrio harveyi HY01]
          Length = 231

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 56/200 (28%), Gaps = 20/200 (10%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
              + ++ +R        WP  +   K+   +  +  +            +         
Sbjct: 32  SQPTLSRVERG---AVPSWPIVDGYCKLFGWS-LSELEKRLHREIPETNLDSMPAPTRKR 87

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA--IQTQDTRHKTQDTSML--- 148
               +             GN W      E  +                 K   TSM    
Sbjct: 88  SVNQNAGRDIAVLSWVQAGN-WGESPCIEKHNQETKFIPGKSPKNAYLLKVNGTSMENCG 146

Query: 149 --PLYRKGDILILNS----AIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSIDLMSLNCC 201
               +  G  +++N      IQ   G  ++     T +   K L+   G    L  LN  
Sbjct: 147 GKDHFPNGSFILVNPDVSGTIQDYVGKFVVAVDESTQEATFKQLVEDGGARY-LKPLNLQ 205

Query: 202 YPVDTV-EMSDIE-WIARIL 219
           YPV  V E + I+  + R++
Sbjct: 206 YPVIKVTETTHIKGVVCRVI 225


>gi|123442595|ref|YP_001006572.1| repressor protein CI [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122089556|emb|CAL12404.1| repressor protein CI [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 199

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 26/179 (14%)

Query: 9   IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E ++   +    +T   LA+ +G+   +  +  +   +G      T+ +  I  A N 
Sbjct: 5   LAERLNIAMQLRGNMTQGALAKASGISQPTIWRLIKGEAKG------TKKLVDIANALNV 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSP 126
               L +                             +       G   ++V  P+   +P
Sbjct: 59  NAEWLANGVGEMEGNNPTPR--------VDRIDNNSYVPVWTVAGQTNDSVVAPDGKVTP 110

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               Y +            S  P    G I+I++++++    D ++     G       
Sbjct: 111 SWRAYILDRN------SGCSEAPA---GSIVIVDTSLKPGTNDLVVAI-NGGSASVYRF 159


>gi|94987119|ref|YP_595052.1| hypothetical protein LI0677 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731368|emb|CAJ54731.1| hypothetical protein LI0677 [Lawsonia intracellularis PHE/MN1-00]
          Length = 253

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 25/219 (11%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
           T + LA    +  +S + +KR            E   K+          +          
Sbjct: 40  TQAELANILEIRQSSISDAKRRDSVPP------EWYIKLFEKFGLNPDWIKQGVGPMYLR 93

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGV--------FPTGNKWNTVGVPEIRSPHNGIYAIQ 134
           TE+      L       +   +   +        F     +             G  A+ 
Sbjct: 94  TEQGYIPRELPLTGVQETPMHYGDPISKSVLHTVFSMRCNYIENSNSLPILQPTGKIALP 153

Query: 135 -----TQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLISR 188
                      +T+  + LPL R+   L +N+       G+   +      I  K L   
Sbjct: 154 QPYTGANILVFQTESDAFLPLVRRYTYLGINTDFTHPQSGEIYAVFMPYEGIALKRLFLS 213

Query: 189 R-GRSIDLMSL-NCCYPVDTVEMSD--IEWIARILWASQ 223
                  L +  N  +    +   +  I  + R+ W  Q
Sbjct: 214 TQKNGFCLCTDQNDSHESF-LPAQECPIRILGRLAWVFQ 251


>gi|66769288|ref|YP_244050.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|66574620|gb|AAY50030.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
          Length = 460

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+ GL P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRP 50


>gi|332800291|ref|YP_004461790.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332698026|gb|AEE92483.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 103

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I ++ E   L+   LA KAGL     N+ +        R    E++ KI  A   
Sbjct: 7  DIGKRIRQLRESLGLSNRQLAIKAGLSQPVMNRIENGN-----RKADIETLEKICYALGI 61

Query: 68 TICQLLDLPFSDGRTTE 84
          T+     +   +     
Sbjct: 62 TLIDFFSIDEEEMSPEY 78


>gi|126173345|ref|YP_001049494.1| cupin 2 domain-containing protein [Shewanella baltica OS155]
 gi|152999697|ref|YP_001365378.1| cupin 2 domain-containing protein [Shewanella baltica OS185]
 gi|160874315|ref|YP_001553631.1| XRE family transcriptional regulator [Shewanella baltica OS195]
 gi|217974352|ref|YP_002359103.1| XRE family transcriptional regulator [Shewanella baltica OS223]
 gi|304409280|ref|ZP_07390900.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183]
 gi|307303638|ref|ZP_07583391.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175]
 gi|125996550|gb|ABN60625.1| transcriptional regulator, XRE family with cupin sensor [Shewanella
           baltica OS155]
 gi|151364315|gb|ABS07315.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS185]
 gi|160859837|gb|ABX48371.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
 gi|217499487|gb|ACK47680.1| transcriptional regulator, XRE family [Shewanella baltica OS223]
 gi|304351798|gb|EFM16196.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183]
 gi|306912536|gb|EFN42959.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175]
 gi|315266550|gb|ADT93403.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS678]
          Length = 182

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++     +  S     +   +   LL               +P           P     
Sbjct: 57  SLVDFFSIEASADSEQKVVYRSNELLDIGTGPLEFKLIGRDYPNRAMSVMSEIYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +   + ++     +          GD + +     +  GD                 
Sbjct: 117 GEEMLKHEGEEAAMVIEGKF---ELTVGDEVYI-----LEAGDSYYFNSEVPH----RFR 164

Query: 187 SRRGRSIDLMSL 198
           +       L+S 
Sbjct: 165 NPFDEPCRLVSA 176


>gi|196232729|ref|ZP_03131580.1| transcriptional repressor, LexA family [Chthoniobacter flavus
           Ellin428]
 gi|196223189|gb|EDY17708.1| transcriptional repressor, LexA family [Chthoniobacter flavus
           Ellin428]
          Length = 203

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
            +    K +  SM+        L +    +   G  +      G+   K L+ +R     
Sbjct: 114 KRVFALKVRGDSMIGAAINDGDLAILENREPQAGAIVAALID-GETTLKRLVQQR-GRYY 171

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L + N  +P   + M+++     ++
Sbjct: 172 LRAENPNFPDL-MPMAELSVQGVLV 195


>gi|157414964|ref|YP_001482220.1| hypothetical protein C8J_0644 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385928|gb|ABV52243.1| hypothetical protein C8J_0644 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747603|gb|ADN90873.1| Transcriptional regulator, putative [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 141

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR-GRS 192
                  K    SM+P+      ++     +   GD L I      ++ K+L      + 
Sbjct: 48  PKNMKAIKVDGYSMVPMLLPDSWVVFEETHKYQ-GDGLYILNFDNQLMVKLLQLDPISKV 106

Query: 193 IDLMSLNCCYPVDTVEMSD----IEWIARIL 219
           +D++S+N  Y   ++++ D    +    ++L
Sbjct: 107 LDIISVNKDYKSYSLDLKDSQVELIIQGKVL 137


>gi|294669733|ref|ZP_06734799.1| hypothetical protein NEIELOOT_01633 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308299|gb|EFE49542.1| hypothetical protein NEIELOOT_01633 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 102

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
           +           +M P       L+++ +        +         + + +     R I
Sbjct: 8   RNHCGIFSVHGEAMKPTLDGRCELLVDFSDNKLADGGIYALQIGSRSLVRRVKLLL-RQI 66

Query: 194 DLMSLNCCYPVDTVEMSD---IEWIARI--LW 220
            L   N  YP  T+E  D   ++ I R+  +W
Sbjct: 67  ILACDNPEYPDMTIEGEDLNRLKVIGRVRGVW 98


>gi|254785721|ref|YP_003073150.1| DNA-binding protein [Teredinibacter turnerae T7901]
 gi|237684567|gb|ACR11831.1| DNA-binding protein [Teredinibacter turnerae T7901]
          Length = 200

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 63/190 (33%), Gaps = 44/190 (23%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + ++ E +  + ++H L+   LAR+A +  ++ +  ++  +      PS  S+ K+L+A 
Sbjct: 19  NNRLGERLQAVRKQHGLSQRELARRAEVTNSTLSMIEQGKV-----SPSVASLEKVLSAI 73

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             T+ +             +    + +                    +    + +P   +
Sbjct: 74  PMTLQEFFSDTLEILPPIYRAADFLSIRK------------------DGTENLIMPLPEA 115

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            H+G+Y  +           +  P  +     ++        G  ++     G++V    
Sbjct: 116 GHDGVYLSRQ----------TYSPGSQISTEWMIRKG---FVGGIVVE----GELVL--- 155

Query: 186 ISRRGRSIDL 195
               G    L
Sbjct: 156 -RLDGNEYQL 164


>gi|313207466|ref|YP_004046643.1| hypothetical protein Riean_1984 [Riemerella anatipestifer DSM
           15868]
 gi|312446782|gb|ADQ83137.1| hypothetical protein Riean_1984 [Riemerella anatipestifer DSM
           15868]
 gi|315023362|gb|EFT36372.1| hypothetical protein RAYM_09285 [Riemerella anatipestifer RA-YM]
 gi|325335076|gb|ADZ11350.1| hypothetical protein RIA_0163 [Riemerella anatipestifer RA-GD]
 gi|329025331|gb|AEB71695.1| hypothetical protein [Riemerella phage RAP44]
          Length = 252

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 77/249 (30%), Gaps = 32/249 (12%)

Query: 1   MTSFSHKKIWEAI-DRMAERHNL--------TPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
           M     K I   + DR+   +N         T + LA K G   ++F+ +      G  R
Sbjct: 1   MKKIIQKSIKNNLKDRLNTVYNYLKKTTEFTTQTLLAEKIGYTRSNFSAALN----GDER 56

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI--------PLLYFPPSGSGGF 103
           + +   + KI+ A  +   +       +   + ++                      G  
Sbjct: 57  YLTEGVVDKIVEAFPQLNREWFITGKGEMLKSSEETPIKGEGVKVILDAEIKRTPSEGTP 116

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LN 160
           +    F  G   + +      S +      +  +        S+  +   G I+    + 
Sbjct: 117 YYDVDFAGGWNSDEIFSLGNPSFYIQSPDFRRAEFATNLVGNSISKIIPSGAIVGFRQVE 176

Query: 161 SAIQVNCGDRLLIKPRTGDI-VAKVLISRRG--RSIDLMSL----NCCYPVDTVEMSDIE 213
                   + L       ++   K +  ++G   ++ L+      +  Y  + + +  + 
Sbjct: 177 DWKTYFPTNELYGIITKNEMRTVKRVKRKKGDSNTLVLIPDPLEVHSGYEPEELPIDFVS 236

Query: 214 WIARIL-WA 221
            + +++ WA
Sbjct: 237 KMFQVVAWA 245


>gi|330973936|gb|EGH74002.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 147

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213
           D+L+++ +     GD ++       I  + L   RG  + L S N  YP   V +  D+ 
Sbjct: 67  DMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDVVILESQNPDYPPLHVTDNDDLI 124

Query: 214 WIARI 218
            +  +
Sbjct: 125 ILGVV 129


>gi|330942619|gb|EGH45192.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 147

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M       GD+L+++ +     GD ++       I  + L   RG  
Sbjct: 45  EPHAYLARIEDQGMQGGGMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDV 102

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S N  YP   V +  D+  +  +
Sbjct: 103 VILESQNPDYPPLHVTDNDDLIILGVV 129


>gi|330897598|gb|EGH29017.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 147

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213
           D+L+++ +     GD ++       I  + L   RG  + L S N  YP   V +  D+ 
Sbjct: 67  DMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDVVILESQNPDYPPLHVTDNDDLI 124

Query: 214 WIARI 218
            +  +
Sbjct: 125 ILGVV 129


>gi|15600494|ref|NP_253988.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116053448|ref|YP_793775.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894404|ref|YP_002443274.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254238004|ref|ZP_04931327.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719]
 gi|254243812|ref|ZP_04937134.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192]
 gi|296392160|ref|ZP_06881635.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313106725|ref|ZP_07792942.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9951617|gb|AAG08686.1|AE004943_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115588669|gb|ABJ14684.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169935|gb|EAZ55446.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719]
 gi|126197190|gb|EAZ61253.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192]
 gi|218774633|emb|CAW30450.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310879444|gb|EFQ38038.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 182

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +   L       T+   K   L+                P+    +     P     
Sbjct: 57  SLVEFFSLDLEQDSHTQVVYKADELIDISSGAVSMRLVGKAHPSRAIAFLDETYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++       
Sbjct: 117 GEEMLNHEGEEAGVLVDG 134


>gi|329890293|ref|ZP_08268636.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
 gi|328845594|gb|EGF95158.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
          Length = 188

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                I   +  + +R  L+   LARKAG+  ++ +  +          PS  S+ ++L
Sbjct: 6  MEEENIIGPRLRALRDRLGLSQRALARKAGVPSSTVSLVESGRT-----SPSVGSLKRLL 60

Query: 63 AATNETICQLL 73
           A   ++    
Sbjct: 61 DAAGISLGDFF 71


>gi|225377108|ref|ZP_03754329.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans
          DSM 16841]
 gi|225211013|gb|EEG93367.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans
          DSM 16841]
          Length = 178

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +  +I   I +  +   LT   +A++ G+   + NK +          P  E +  I  
Sbjct: 1  MTQMQIGSVIRKYRKECGLTQEEMAKRLGVTTPAVNKWENGNTN-----PDIELLAPIAR 55

Query: 64 ATNET 68
            + +
Sbjct: 56 LLHIS 60


>gi|66045157|ref|YP_234998.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255864|gb|AAY36960.1| Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           B728a]
          Length = 147

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M       GD+L+++ +     GD ++       I  + L   RG  
Sbjct: 45  EPHAYLARIEDQGMQGSGMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDV 102

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S N  YP   V +  D+  +  +
Sbjct: 103 VILESQNPDYPPLHVTDNDDLIILGVV 129


>gi|217979165|ref|YP_002363312.1| putative phage repressor [Methylocella silvestris BL2]
 gi|217504541|gb|ACK51950.1| putative phage repressor [Methylocella silvestris BL2]
          Length = 211

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 23/189 (12%)

Query: 34  DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
            P +    KR    G  R  +TE++  +      T   LL+               + ++
Sbjct: 30  KPDAIRNLKRAVKSGDRRGVTTETLTALAPVLKTTAAWLLEGVGDP-----TPGNRVHVV 84

Query: 94  YFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
               +G+  F +    P          PE        + I T     + +  SM P Y  
Sbjct: 85  GRIGAGAEIFPEFEQTP----------PEGLYEIEVPFPIATDAIAFQVEGDSMWPRYDP 134

Query: 154 GDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEM 209
           GD++I        +   G    ++   G    K +    +  + DL S N       +  
Sbjct: 135 GDVIICWREGADAEEVVGWEAAVRTADGKRYLKRIQRGAKAGTFDLESHNAA----PIRS 190

Query: 210 SDIEWIARI 218
             IEW A I
Sbjct: 191 VKIEWAAAI 199


>gi|281355057|ref|ZP_06241551.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
 gi|281317937|gb|EFB01957.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
          Length = 73

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            S + I E +  +  +   +   LAR+ G+  ++ N+ +    +   
Sbjct: 1  MPSMENIAEQLKALRRQRGWSQEDLARELGVSFSTVNRWENGKAKPSR 48


>gi|330980471|gb|EGH78574.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 109

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 6/109 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +    +   L  + LA +AG+  TS +  +R   +       T  + KI         
Sbjct: 5   DRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKA------TAHVAKIADVCGVNAL 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            L D            E     +    S    +        G     V 
Sbjct: 59  WLSDGKGDMTAFITSNEPSNVSMAEQSSRMYRYPLVSWVAAGEWSEAVE 107


>gi|313111272|ref|ZP_07797090.1| cI repressor protein [Pseudomonas aeruginosa 39016]
 gi|310883592|gb|EFQ42186.1| cI repressor protein [Pseudomonas aeruginosa 39016]
          Length = 85

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---YP 203
           M P    GD+L+++ +       ++ +   +   + K L+S       + S N     +P
Sbjct: 1   MEPTINDGDVLLVDLSKIEPEDHQVFVLAGSDGAIVKRLVSSTFGRWIIRSDNEDKAEFP 60

Query: 204 VDTV---EMSDIEWIARILW 220
              +   +  +   I +++W
Sbjct: 61  DRNLSREDNDEHRIIGKVIW 80


>gi|283954865|ref|ZP_06372381.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793705|gb|EFC32458.1| signal peptidase I, putative [Campylobacter jejuni subsp. jejuni
           414]
          Length = 284

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 73/223 (32%), Gaps = 29/223 (13%)

Query: 25  SGLARKAGLDPTSFNKSKRFGI----EGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80
              + K G+D       +        E    + + +S+ ++            +   +  
Sbjct: 48  KEFSEKLGIDMNLITNPEMENYYELVEELKTFFNVKSLEEVAERLGYKKNNANNWRNNKQ 107

Query: 81  RTTEKKEKEIP---------LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
            + +  +K            + +   S +  +F       G    +          +  +
Sbjct: 108 LSAQALKKYYELKKANNSVSIHHHKDSITIRYFPDIYASAGFGNASENENFQLINIDKTF 167

Query: 132 AIQ-------TQDTRHKTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGDI 180
            I+       +Q    K    SM P  + G  +I+++      ++  GD ++ +  + ++
Sbjct: 168 LIEVLGVPYKSQYDMIKIFGNSMEPFIQNGSFIIIDTTKNSLDKIRNGDVVIFRKDS-EL 226

Query: 181 VAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
             K ++      +I + S N  +    V+ + ++   +I  ++
Sbjct: 227 FCKRILKNAFDDNIIISSDNVNFNDKKVKKTALKEYIFIGVVV 269


>gi|216905986|ref|YP_002333582.1| gp21 [Bacillus phage TP21-L]
 gi|215809713|gb|ACJ70547.1| gp21 [Bacillus phage TP21-L]
          Length = 210

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 21/181 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I R+ E+       +    G+  ++ +                 ++ KI  A   T  
Sbjct: 19  ENIKRLMEKKGFRQVDMVNATGIARSTMSTYINAKSV-----IPMVALQKIADALGVTKA 73

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           Q++DL  S                    G           +      +  P         
Sbjct: 74  QIVDLDSS--------------ESVSVMGVKKLPIYNNIKSEYGEIELNDPSGYLDTPFS 119

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           +        ++ QD SM      G   +++    V  GD + +     +I+ + +   + 
Sbjct: 120 WIGNNDHFYYEVQDDSMF-GITAGSKALVHRQSVVENGD-MALIAVNNEILIRRVYKDKN 177

Query: 191 R 191
            
Sbjct: 178 E 178


>gi|117618444|ref|YP_856575.1| umuD protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559851|gb|ABK36799.1| umuD protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 140

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +             +    SM+      GD+L+++ A++ + G  +++ 
Sbjct: 31  DYVE--QTIDLNQVCIQHPAATFYVRACGYSMVGEGIHDGDLLVIDRAVKASHG-AVVLA 87

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWIARI 218
              G+   K L         L+  N  +    ++   ++E    +
Sbjct: 88  CLDGEFTVKKLQETP--IPALLPSNPDFQPIYLQEGQELEIFGVV 130


>gi|49081740|gb|AAT50270.1| PA5301 [synthetic construct]
          Length = 183

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGARLRTIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +   L       T+   K   L+                P+    +     P     
Sbjct: 57  SLVEFFSLDLEQDSHTQVVYKADELIDISSGAVSMRLVGKAHPSRAIAFLDETYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +   + ++       
Sbjct: 117 GEEMLNHEGEEAGVLVDG 134


>gi|289662784|ref|ZP_06484365.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum
          NCPPB702]
          Length = 184

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+ GL P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRP 50


>gi|170719389|ref|YP_001747077.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169757392|gb|ACA70708.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 182

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 56/192 (29%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLSGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +   +        +   K   L+                P     + T   P     
Sbjct: 57  SMVEFFSVELEAESHAQIVYKAHELIDISDGAVTMKLVGKSHPNRAIAFLTEVYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +     ++T    +    L        ++      +  GD    +            
Sbjct: 117 GAEMLTHDGEETGILLEGRLEL--------VVGTETFVLEEGDSYYFESTRPH----RFR 164

Query: 187 SRRGRSIDLMSL 198
           +       L+S 
Sbjct: 165 NPFDEPARLISA 176


>gi|312126654|ref|YP_003991528.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776673|gb|ADQ06159.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 105

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + E+  L+ S LA+ AG+  ++ +  +        R P+ + I KI  A   
Sbjct: 3  DVGKRIKELREQCGLSMSKLAKIAGVGQSTLSYIENGE-----RSPTIDVIMKICNALGI 57

Query: 68 TICQLLDLPFSDGRTTE 84
          T+ +           + 
Sbjct: 58 TLVEFFGGEEKTHLESP 74


>gi|70733319|ref|YP_263093.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68347618|gb|AAY95224.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 182

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2  DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          ++ +           ++   K   L+     
Sbjct: 57 SMVEFFSEEVLQETPSQIVYKAHELIDISDG 87


>gi|332829077|gb|EGK01741.1| hypothetical protein HMPREF9455_01889 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 237

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 68/232 (29%), Gaps = 34/232 (14%)

Query: 4   FSH-KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +   +I + ID    +  ++ +    + G+   +           +    + E+I KI 
Sbjct: 5   LTQKDRIIQFID----KQGISKNKFYNQTGVSNGTL---------DKKSGITGETIAKIY 51

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A  E   + L     +   +        L       +          +         P 
Sbjct: 52  TAYPEINLEWLISGEGEMIKSSLFWSYDNLQSVREQYAAVMNIDPATVSDKNLLKAESPL 111

Query: 123 IRSPH---------NGIYAIQ---TQDTRHKTQDTSMLPLYRKGDILIL---NSAIQVNC 167
              P          +G  +I    + D     +  SM PL + GDI+     N    +  
Sbjct: 112 EFIPIFSYKGSHKCHGYLSIPNLSSCDGAGFVKTDSMYPLIKPGDIVCYKTANHTNDIYW 171

Query: 168 GD--RLLIKPRTGD-IVAKVLIS--RRGRSIDLMSLNCCYPVDTVEMSDIEW 214
           G+   + +     + +  K L         I L   N  Y    V ++ I+W
Sbjct: 172 GEMYIIYLTIDGEEFLTIKNLDKSDIGDDFIRLSGYNQKYHPKDVPINSIQW 223


>gi|320354394|ref|YP_004195733.1| XRE family transcriptional regulator [Desulfobulbus propionicus DSM
           2032]
 gi|320122896|gb|ADW18442.1| transcriptional regulator, XRE family [Desulfobulbus propionicus
           DSM 2032]
          Length = 436

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +   I  + ++  L+   LA KAG+ P+S ++ ++  I     +PS  ++F++  + 
Sbjct: 255 DLGARIKAVRKKQGLSQKELAEKAGVTPSSISQIEKNLI-----YPSLPALFRLAESL 307


>gi|153806948|ref|ZP_01959616.1| hypothetical protein BACCAC_01224 [Bacteroides caccae ATCC 43185]
 gi|149130068|gb|EDM21278.1| hypothetical protein BACCAC_01224 [Bacteroides caccae ATCC 43185]
          Length = 237

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 62/232 (26%), Gaps = 21/232 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             ++  +   I R  +  NL   S LA   G+   +                    + K+
Sbjct: 1   MDTNLDVPGIIKRAKQALNLKRDSELAEFLGVSRATVTNWAARNSIDFR-----LLLDKL 55

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +     L            + E     +    +            T          
Sbjct: 56  GNTVDYNWLLLGKGNPKHQSRFCESELAQGEVQIIHNPKTAEPVDDRSVTLYDITAAANL 115

Query: 122 EIRSPHNGIYAIQT--------QDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170
           +    +   YA+           D        SM P+ + GDI+    +NS   V  G+ 
Sbjct: 116 KTLFTNKHQYALGKIRIPNISACDGAVYVNGDSMYPILKSGDIIGYKEINSFESVIYGEI 175

Query: 171 LLIKPRTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            L+         +  K      +   I L+S N  +    +  + I  +A +
Sbjct: 176 YLVSFMIDGDEYLAVKYANRSEKEGCIKLVSYNTHHEPMDIPFAAINAMAIV 227


>gi|160872218|ref|ZP_02062350.1| putative lambdoid prophage e14 repressor protein C2 [Rickettsiella
           grylli]
 gi|159121017|gb|EDP46355.1| putative lambdoid prophage e14 repressor protein C2 [Rickettsiella
           grylli]
          Length = 222

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 59/208 (28%), Gaps = 16/208 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +A       + L+ +     +  +                  I K     +  + 
Sbjct: 9   KNLRILARTAG-GITVLSERLDRSQSQISHLIGNNPIKNIGDRLASHIEKTFNKPHGWLD 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                   +G    +  +    +    +                   + V       +  
Sbjct: 68  HEHVAEEVEGTYHYQNIQPYYQVPLLSAQEAKERFLHFTK-------ISVKTYSKYLSTN 120

Query: 131 YAIQTQDTRHKTQDTSML----PLYRKGDILILNSAIQVNCGDRL---LIKPRTGDIVAK 183
             + +     + ++  M     P + K  I++L++    +  D +   + +  +  ++ +
Sbjct: 121 IPLTSDAFALRVENDCMETAQGPSFSKNCIIVLDTDCVPHNADFVLAKVKQDPSSTLLFR 180

Query: 184 VLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            L+    R   L +LN  YP   ++  D
Sbjct: 181 QLVFDGNRRY-LKALNRQYPTTEMQPDD 207


>gi|330501217|ref|YP_004378086.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328915503|gb|AEB56334.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 182

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLSGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSP 126
           ++ +   L        +   +   L                 P+    +     P     
Sbjct: 57  SLVEFFSLDMEQENQIQVVYRASELTDICSGAITMKLIGKAHPSRAISFLDETYPAGTDT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
            + +YA + ++     + 
Sbjct: 117 GDEMYAHEGEEAGMLVEG 134


>gi|269138965|ref|YP_003295666.1| regulatory prophage protein cI [Edwardsiella tarda EIB202]
 gi|267984626|gb|ACY84455.1| regulatory prophage protein cI [Edwardsiella tarda EIB202]
          Length = 86

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           M       D++ ++ +++   GD +           K L   +  ++ ++S N  Y   +
Sbjct: 1   MKGTIDPEDLVFIDISVKYFDGDGVYAFTYGSTSHIKRLQMVKN-TLTVISDNPAYANWS 59

Query: 207 V---EMSDIEWIARIL 219
           +   +   +    +++
Sbjct: 60  IEKGDEDQMHINGKVI 75


>gi|298486437|ref|ZP_07004498.1| Peptidase S24, S26A and S26B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159065|gb|EFI00125.1| Peptidase S24, S26A and S26B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 147

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M     R GD+L+++ +     GD ++        + + L   RG  
Sbjct: 45  EPHVYLARVEDEGMQGGGMRTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDV 102

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S +  YP   V +  D+  +  +
Sbjct: 103 VILKSEHPDYPPLHVTDHDDLIILGVV 129


>gi|146305289|ref|YP_001185754.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145573490|gb|ABP83022.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp]
          Length = 182

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 57/192 (29%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +   L       T+   +   L                 P+    +     P     
Sbjct: 57  SLVEFFSLDLEQENQTQVVYRASELTDICSGAITMKLIGKAHPSRAIAFLDETYPAGADT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            + +YA + ++     +          G  + +     +  GD    +            
Sbjct: 117 GDEMYAHEGEEAGMLVEGKL---ELTVGSEVFV-----LEPGDSYYFESSKPH----RFR 164

Query: 187 SRRGRSIDLMSL 198
           +       L+S 
Sbjct: 165 NPFDEPARLISA 176


>gi|239630752|ref|ZP_04673783.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527035|gb|EEQ66036.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 190

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  +      I         T S LA+KAG+  T+ +  +R       R PS E + K
Sbjct: 1   MITLKN-----RIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGT-----RTPSAEVLKK 50

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           +          L+ L  +    T        + +   SG+     + V   G+++
Sbjct: 51  LADIFETNTAYLMGLTDA-PAETLTNSNLKNIEFEVRSGAFQRLANIVLSIGSEY 104


>gi|319646361|ref|ZP_08000591.1| YqaE protein [Bacillus sp. BT1B_CT2]
 gi|317392111|gb|EFV72908.1| YqaE protein [Bacillus sp. BT1B_CT2]
          Length = 120

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +   L+   LA + G         ++       R P  E++ KI      +
Sbjct: 2  LGKRIAALRKEKGLSQYELADRLGFSRGKLANYEQGT-----REPDYETLIKIADFFEVS 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
             LL       +    +++   +L  P 
Sbjct: 57 TDYLLRGVDPKVQDKIFEDEAKRILNDPK 85


>gi|331005212|ref|ZP_08328606.1| Transcriptional regulator, MerR family [gamma proteobacterium
           IMCC1989]
 gi|330420994|gb|EGG95266.1| Transcriptional regulator, MerR family [gamma proteobacterium
           IMCC1989]
          Length = 180

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 12/166 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I   + ++ + + L+   LA++AG+  +S +  ++  +      PS  S+ K+L    
Sbjct: 3   DEIAVRLQKVRKIYGLSQRELAKRAGVTNSSVSMIEQGRV-----SPSLSSLEKLLKGIP 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +      + F+D      +  ++                           V  P     
Sbjct: 58  MSTKDFFTIDFNDEADCFFRSYQMFSRTNKAVDCYHLLRDENDERSQLSYEVYEP-GSDT 116

Query: 127 HNGIYAIQTQDTRHKTQDT------SMLPLYRKGDILILNSAIQVN 166
              +   Q + +    Q        S +     GD  I+ +     
Sbjct: 117 GEDMLVDQGRSSGFVVQGKLNVIISSQIDDLDAGDGFIVEAGHPYR 162


>gi|28898552|ref|NP_798157.1| DNA-binding transcriptional repressor PuuR [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|153836272|ref|ZP_01988939.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AQ3810]
 gi|260365009|ref|ZP_05777580.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          K5030]
 gi|260879596|ref|ZP_05891951.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AN-5034]
 gi|260894929|ref|ZP_05903425.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          Peru-466]
 gi|260901062|ref|ZP_05909457.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AQ4037]
 gi|28806770|dbj|BAC60041.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
          2210633]
 gi|149750547|gb|EDM61292.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AQ3810]
 gi|308085951|gb|EFO35646.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          Peru-466]
 gi|308093441|gb|EFO43136.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AN-5034]
 gi|308110714|gb|EFO48254.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AQ4037]
 gi|308111572|gb|EFO49112.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          K5030]
 gi|328468839|gb|EGF39799.1| DNA-binding transcriptional repressor PuuR [Vibrio
          parahaemolyticus 10329]
          Length = 185

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I ++ ++H L+   LA +AG+  ++ +  +   +      PS  S+ KI+   + 
Sbjct: 5  EIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKV-----SPSVSSLQKIVNVFSL 59

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          ++ +      S     +   K   L+  
Sbjct: 60 SLSEFFIFEQSSNDEVKVVFKPSDLVEI 87


>gi|213963953|ref|ZP_03392198.1| transcriptional regulator [Capnocytophaga sputigena Capno]
 gi|213953366|gb|EEB64703.1| transcriptional regulator [Capnocytophaga sputigena Capno]
          Length = 323

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170
            ++     E    ++            +    SM P  + G  +I   + +   ++    
Sbjct: 170 GYDDSNYIEELPTYSVPDMRNGTYRMFQVSGFSMYPTLQDGSYVIGKFVENWEWLSDNRV 229

Query: 171 LLIKPRTGDIVAKVL--ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            ++      I+ K +   +R    +   S N  Y   TV + DI  I 
Sbjct: 230 CVVVTECDGIIVKRVTNRAREKGFLYCKSDNRDYKHITVRVEDIREIW 277


>gi|227551856|ref|ZP_03981905.1| transcriptional regulator [Enterococcus faecium TX1330]
 gi|257895552|ref|ZP_05675205.1| repressor protein [Enterococcus faecium Com12]
 gi|293568950|ref|ZP_06680263.1| prophage Lp1 protein 8 [Enterococcus faecium E1071]
 gi|294619352|ref|ZP_06698816.1| prophage Lp1 protein 8 [Enterococcus faecium E1679]
 gi|227179028|gb|EEI60000.1| transcriptional regulator [Enterococcus faecium TX1330]
 gi|257832117|gb|EEV58538.1| repressor protein [Enterococcus faecium Com12]
 gi|291588383|gb|EFF20218.1| prophage Lp1 protein 8 [Enterococcus faecium E1071]
 gi|291594401|gb|EFF25814.1| prophage Lp1 protein 8 [Enterococcus faecium E1679]
          Length = 123

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  + ++H  T + LA+K  +   +    +    E     P++E++ K+    N +
Sbjct: 2   LKDRIKELRKQHGWTQAELAKKMSVSQQTIGSWEVGRAE-----PNSEALTKLAHLFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
              LL    +    T++   E+  L    +  
Sbjct: 57  TDYLLSNHKTPEWATKEDIIELDKLLESNANM 88


>gi|237751081|ref|ZP_04581561.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229373526|gb|EEO23917.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 222

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 56/224 (25%), Gaps = 18/224 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S  K  E +  +     L+    A K GL  +     +           S   + ++ 
Sbjct: 1   MKSEHKKNEKLRNLRLSLGLSQKKFAEKLGLTRSLIAAYETEKNP-----ISNNVLLRVS 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--- 119
                                +       +L   P                  N +    
Sbjct: 56  EIFGIKNEYFESEMTPQEAFEKYSINPADILKINPFDDMVCCVYESLEDYAGRNPLVKAN 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +                    K  +++  P  + GDILI+    +   GD ++ K +   
Sbjct: 116 LKIQFLSLLFAANTDGNYHFIKLNNSTNEPFAKNGDILIVERQGRAVNGDFIVAKFQESY 175

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-----EMSDIEWIARI 218
           I+ +  +     ++     N       +     E   IE +  I
Sbjct: 176 IIFQYFVVGIDEAL-FKGSN----NIEIKLKGNEREQIEILGII 214


>gi|330954514|gb|EGH54774.1| peptidase S24, S26A and S26B [Pseudomonas syringae Cit 7]
          Length = 147

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M       GD+L+++ +     GD ++       I  + L   RG  
Sbjct: 45  EPHAYLARIEDQGMQGGGMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDV 102

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S N  YP   V +  D+  +  +
Sbjct: 103 VILESQNPDYPPLRVTDNDDLIILGVV 129


>gi|295094537|emb|CBK83628.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1]
          Length = 248

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 49/213 (23%), Gaps = 31/213 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                 I + +  +     +T S LA    +   +     +    G+ + P  + +  I 
Sbjct: 1   MQQQYDIGKRLREVMAERGVTISQLAELTDVSEDTI----KAIRSGKTKSPGIQLMISIA 56

Query: 63  AATNETICQLLDLP-----FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-- 115
            A   T+   L                +                        P+ + +  
Sbjct: 57  DALGCTMDGFLHRRSLTDEELYLLQKYRTLNIHGKRMVMLMADSEDHMQKKLPSADAYRA 116

Query: 116 ------------------NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                             +              Y     D   +     + P+Y K DI+
Sbjct: 117 KTRRIPCISSTHTLASNSDYSTHATEFIEIPADYF-PNADYCLRLTTNMLHPIYIKDDII 175

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
            +        GD  L     G  + +    + G
Sbjct: 176 AVEQNFPHF-GDIALFLNENGVEMIRKYTEKDG 207


>gi|113971256|ref|YP_735049.1| XRE family transcriptional regulator [Shewanella sp. MR-4]
 gi|114048494|ref|YP_739044.1| XRE family transcriptional regulator [Shewanella sp. MR-7]
 gi|117921538|ref|YP_870730.1| XRE family transcriptional regulator [Shewanella sp. ANA-3]
 gi|113885940|gb|ABI39992.1| transcriptional regulator, XRE family with cupin sensor [Shewanella
           sp. MR-4]
 gi|113889936|gb|ABI43987.1| transcriptional regulator, XRE family with cupin sensor [Shewanella
           sp. MR-7]
 gi|117613870|gb|ABK49324.1| transcriptional regulator, XRE family with cupin sensor [Shewanella
           sp. ANA-3]
          Length = 208

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 28  DIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 82

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++     +  S     +   +   LL               FP           P     
Sbjct: 83  SLVDFFSIEASIESEQKVVYRSDELLDIGTGPLEFKLIGRDFPNRAMSVMSETYPPGSDT 142

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +   + ++     +          GD + +     +  GD                 
Sbjct: 143 GEEMLKHEGEEAAMVIEGKF---ELTVGDEVYI-----LEAGDSYYFNSELPH----RFR 190

Query: 187 SRRGRSIDLMSL 198
           +       L+S 
Sbjct: 191 NPFDEPCRLVSA 202


>gi|2231995|gb|AAC45921.1| aldehyde dehydrogenase [Azotobacter vinelandii]
          Length = 185

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 46/166 (27%), Gaps = 14/166 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 5   DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSP 126
           ++ +   L      +     +                     P     + +V  P     
Sbjct: 60  SLMEFFSLDLEAEASAPVVYRAAEQAELSRGLLSMRLIGKDHPDRALTFLSVTYPPGADS 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
              +     ++     +    L         +      +  GD   
Sbjct: 120 GEALLLRDGEEAGILVEGRLEL--------QVGEQRYTLESGDTYY 157


>gi|313205461|ref|YP_004044118.1| helix-turN-helix domain protein [Paludibacter propionicigenes
          WB4]
 gi|312444777|gb|ADQ81133.1| helix-turn-helix domain protein [Paludibacter propionicigenes
          WB4]
          Length = 266

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          + S K+I + I  + +   L+   LA+  G    S  + +        R      + K+ 
Sbjct: 4  TLSQKQIGQRITELRKTKGLSQEELAKSIGFSRPSLAQVELGN-----RNIGILEMQKLA 58

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
               ++  ++   F+     + +      +
Sbjct: 59 TVLGFSLDDIMSENFNSKHELKHETAMPKEI 89


>gi|146283672|ref|YP_001173825.1| ultraviolet light resistance protein A [Pseudomonas stutzeri A1501]
 gi|145571877|gb|ABP80983.1| ultraviolet light resistance protein A [Pseudomonas stutzeri A1501]
          Length = 143

 Score = 54.8 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 103 FFDSGVFPTG---NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158
            F S   P G      + +           I A        +    SM+ +     DILI
Sbjct: 17  PFFSFCVPAGFPSPAQDHMEGSISLDELMNIRA--PHTYLARADGESMIQVGIFDRDILI 74

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           ++   +   G+ ++I     + + K+     G  + L S N  +P   +  S+  ++  +
Sbjct: 75  IDRGREAEKGE-VIIAALNNEPLVKIFDR-AGSQVILRSANPKFPPRYLLESEELYVWGV 132

Query: 219 LWAS 222
           +  S
Sbjct: 133 VSYS 136


>gi|24372846|ref|NP_716888.1| transcriptional regulator, putative [Shewanella oneidensis MR-1]
 gi|24346951|gb|AAN54333.1|AE015570_7 transcriptional regulator, putative [Shewanella oneidensis MR-1]
          Length = 182

 Score = 54.8 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++     +  S     +   +   LL               +P           P     
Sbjct: 57  SLVDFFSIEASSECEQKVVYRSDELLNIGTGPLEFKLIGRDYPNRAMSVMSETYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +   + ++     +          GD + +     +  GD                 
Sbjct: 117 GEEMLKHEGEEAAMVVEGRF---ELTVGDEVYI-----LEAGDSYYFNSELPH----RFR 164

Query: 187 SRRGRSIDLMSL 198
           +       L+S 
Sbjct: 165 NPFDEPCRLVSA 176


>gi|66394691|ref|YP_240858.1| ORF021 [Staphylococcus phage X2]
 gi|62636915|gb|AAX92026.1| ORF021 [Staphylococcus phage X2]
          Length = 200

 Score = 54.8 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 37/209 (17%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIF 59
           M    H      +  + E  + +    +   GL  T+  +  +R     +      E+I 
Sbjct: 1   MDKEKH------LKHLMEMKSGSVKAFSEDIGLAYTTVRSILERGVFNAK-----VENII 49

Query: 60  KILAATNETICQLLDLPFSDGRTTEK------KEKEIPLLYFPPSGSGGFFDSGVFPT-- 111
           KI    N     ++DL  +    +          ++  +L +  S        G      
Sbjct: 50  KICKGLNIKPENIMDLNDTIISESITTLIKLTPPRQENVLNYANSQLDEQNSKGDNVVDI 109

Query: 112 ----------------GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
                                     E          +   D   K    SM P+++ G+
Sbjct: 110 NSYKQDKTPVNVNGCVSAGVGERLHDETLFTEMVKAPVPPHDLALKVNGDSMEPMFKDGE 169

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           I+ +     +  G   +      +   K 
Sbjct: 170 IIFVEKTHNIKNGQIGIFII-EEEAYVKK 197


>gi|258539030|ref|YP_003173529.1| hypothetical protein LC705_00839 [Lactobacillus rhamnosus Lc 705]
 gi|257150706|emb|CAR89678.1| Putative protein without homology [Lactobacillus rhamnosus Lc 705]
          Length = 72

 Score = 54.8 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 168 GDRLLIKPRTGDIVAKVLISR-RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           GD  + +     +  K L    + + I L SLN  YP   ++  DI  I  ++
Sbjct: 19  GDLGVGRVADEGVTFKQLSRDYQQKKIVLHSLNDKYPDRCLDPEDISIIGVVI 71


>gi|323958898|gb|EGB54574.1| peptidase S24 [Escherichia coli H489]
          Length = 173

 Score = 54.8 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           + V        H+      +     +    SM       GD+L+++SA +   GD ++  
Sbjct: 64  DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 120

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              G+   K         + L  +N  +     +  +++    +
Sbjct: 121 SMQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 162


>gi|74317534|ref|YP_315274.1| hypothetical protein Tbd_1516 [Thiobacillus denitrificans ATCC
           25259]
 gi|74057029|gb|AAZ97469.1| hypothetical protein Tbd_1516 [Thiobacillus denitrificans ATCC
           25259]
          Length = 120

 Score = 54.8 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
           ++         SM+P + +G+I+++  +  V  G  ++      + + + ++ R      
Sbjct: 24  SEPYALMVLGDSMMPEFEEGEIIVVEPSGLVKDGSYVV-AYVNDEYIFRQIVKRDDG-WM 81

Query: 195 LMSLNCCYPVDTVEMSDI 212
           L  +N  Y    V+  D+
Sbjct: 82  LKPVNPLYENIPVDDLDV 99


>gi|116751481|ref|YP_848168.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700545|gb|ABK19733.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans
           MPOB]
          Length = 432

 Score = 54.8 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 57/170 (33%), Gaps = 19/170 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  +  +  ++ + LA+  G+ P++ ++ +   I     +PS  ++ K+    + 
Sbjct: 252 DLGLRLKELRTKRGISQTELAKSVGVTPSTISQVESNLI-----YPSLPALMKMAEVLSV 306

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT----VGVPEI 123
            I        +  +       E   + F     G  +   + P  + +      + +P  
Sbjct: 307 DISSFFQERLAGKKKFVFSAMESLQVKFADFPEGSIYARALTPIDSDFKVEPYLIEIPSE 366

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLL 172
           ++  +  ++ + ++  +                + L      V  GD + 
Sbjct: 367 KTVFSHFFSHKGEEIGYLISGEL---------QVRLEKEVHTVRAGDTVY 407


>gi|301310367|ref|ZP_07216306.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300831941|gb|EFK62572.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 213

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 56/230 (24%), Gaps = 36/230 (15%)

Query: 3   SFSHKKIWEAID-------RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
             + ++  E +           E   L+   +A+K G +  S  K      +    W  T
Sbjct: 1   MTTKERFVEYLKFKGFGQTAFEESAGLSRGAIAKKTGFNADSIEKIAMACPDLNINWLVT 60

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                        +    +    + + +  K      + F         D  + P     
Sbjct: 61  GL---------GGMLSHSNNEEDEPKISYTKGVPYYNVDFIGGFDLVLNDQTINPEY--- 108

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLL 172
                                         SM P    GD++ L        +  G+   
Sbjct: 109 -----------LIDFKKYNDATCWCNVTGHSMEPEINHGDMIALKKIEDRSFLPLGEVYA 157

Query: 173 IKPRTGDIVAKVL-ISRRGRSIDLMSLN--CCYPVDTVEMSDIEWIARIL 219
           I         K L   +   +  L+  N    Y    +    I  I ++L
Sbjct: 158 IVTTNDMRTIKRLGAGKTDDTYTLVPSNKSPEYSTQQLPARMIRTIFQVL 207


>gi|330831530|ref|YP_004394482.1| putative transcriptional regulator [Aeromonas veronii B565]
 gi|328806666|gb|AEB51865.1| Putative transcriptional regulator [Aeromonas veronii B565]
          Length = 180

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 60/192 (31%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +  +  L+   LA+++G+     ++ ++  +      PS  S+ K+L     
Sbjct: 2   DIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQV-----SPSVASLRKVLEGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++          G     +  ++P L   P        S           V +P      
Sbjct: 57  SLASFFTEETEMGTEVIFRAADMPDLGTHPISYRLVGHSRANRAIGMLQEV-LPPGADTG 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
           + + + + ++     +    + +  +  +L          GD      RT         +
Sbjct: 116 DDMLSHEGEECGIVIKGEVEVTVGEQIYLLGA--------GDGYYFDSRTPH----RFRN 163

Query: 188 RRGRSIDLMSLN 199
              +   L+S N
Sbjct: 164 SGEQECVLISAN 175


>gi|302184832|ref|ZP_07261505.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae
           642]
          Length = 139

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 155 DILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIE 213
           D+L+++ +     GD ++       I  + L   RG  + L S N  YP   V +  D+ 
Sbjct: 59  DMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDVVILESQNPDYPPLHVTDNDDLI 116

Query: 214 WIARI 218
            +  +
Sbjct: 117 ILGVV 121


>gi|187736281|ref|YP_001878393.1| peptidase S24 and S26 domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426333|gb|ACD05612.1| peptidase S24 and S26 domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 268

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 45/174 (25%), Gaps = 17/174 (9%)

Query: 40  KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
           K +R   E     P  + +  +     E                    ++ P        
Sbjct: 84  KYERAASEKGV--PLRQWLTDLADEAAEER-----QLRPMHSPLVPLVRQFPSHAGHARR 136

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
                  G    G+   +  VP           +   +   + +  SM PL   G ++I+
Sbjct: 137 EYSTQIIGNIAAGSLAESDTVPSTIYMERP---LGKNEYVVRVEGKSMEPLIPDGSLVIM 193

Query: 160 NSAI--QVNCGDRLLIKPRTGDIVAKVLISRRG-----RSIDLMSLNCCYPVDT 206
                  +     ++       +  K LI R+          L  +N  +   T
Sbjct: 194 RRHTAPPIPKPGTIVEYNDGRGVTLKKLIRRKNAETGKTEYVLQPINPAFKDIT 247


>gi|254246992|ref|ZP_04940313.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184]
 gi|124871768|gb|EAY63484.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184]
          Length = 189

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 60/194 (30%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 10  EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + R    +  E+P L            +           +  P +    
Sbjct: 65  SLAEFFTFELVESRAVVSRRDEMPNLGNESLAFHLVGANVKDRNMCILREIYQP-LADTG 123

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +      +          L +       +L+       GD    + R          +
Sbjct: 124 PEMLVHAGHEGGVVVSGRLELTV--DSATWLLDP------GDGYYFESRLPH----RFRN 171

Query: 188 RRGRSI-DLMSLNC 200
                I +++S N 
Sbjct: 172 PSAELICEVVSANS 185


>gi|107023923|ref|YP_622250.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691009|ref|YP_836632.1| XRE family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734344|ref|YP_001766291.1| XRE family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105894112|gb|ABF77277.1| transcriptional regulator, XRE family with cupin sensor
           [Burkholderia cenocepacia AU 1054]
 gi|116649098|gb|ABK09739.1| transcriptional regulator, XRE family with cupin sensor
           [Burkholderia cenocepacia HI2424]
 gi|169817586|gb|ACA92169.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
           MC0-3]
          Length = 183

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 60/194 (30%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + R    +  E+P L            +           +  P +    
Sbjct: 59  SLAEFFTFELVESRAVVSRRDEMPNLGNESLAFHLVGANVKDRNMCILREIYQP-LADTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +      +          L +       +L+       GD    + R          +
Sbjct: 118 PEMLVHAGHEGGVVVSGRLELTV--DSATWLLDP------GDGYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                I +++S N 
Sbjct: 166 PSAELICEVVSANS 179


>gi|283138937|gb|ADB12540.1| hypothetical protein [uncultured bacterium 9F08]
          Length = 125

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             +         SM P + +GD++++        G  ++             +     + 
Sbjct: 28  DKEPYVLMVLGDSMEPEFNEGDVIVIEPGANYRDGSYIIAYHNDE--YIFRQLRVINDNF 85

Query: 194 DLMSLNCCY 202
            L  LN  Y
Sbjct: 86  YLTPLNPNY 94


>gi|225830|prf||1314257A phage 16-3 repressor ORF C
          Length = 197

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 50/200 (25%), Gaps = 47/200 (23%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS---------------KRFG 45
           M+  +     + +    E   +T + LAR+ G    + N                 +   
Sbjct: 8   MSRLT-----DTLAAKLEEAGITQAELARRVGQSQQAINNLFAAVRRRQWFARLARELGI 62

Query: 46  IEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
            E + R   TE+       T+    +         R      ++   L  P +  G   +
Sbjct: 63  DEQQMRQMMTEAGRDPEKVTSLAGLRKYRAVLPSPREPFPIIRQQEHLPRPNATIGEETN 122

Query: 106 S--------------------GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
                                     G+  + V  P                        
Sbjct: 123 MEPRKKKLLPVLGEAVGGEDGEYIFNGSVLDYVDCPPSLENVP-------NAYAVYIDGE 175

Query: 146 SMLPLYRKGDILILNSAIQV 165
           SM+P +R G+ + ++     
Sbjct: 176 SMVPRFRPGETVWVHPTKPP 195


>gi|330878565|gb|EGH12714.1| RulA protein [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330967768|gb|EGH68028.1| RulA protein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 147

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M      +GD+L+++ +     GD ++       +  + L   RG  
Sbjct: 45  EPHVYLARVEDEGMRGCGMSRGDMLVVDRSQYAEHGDIVVASLNARQL-CRRLH-MRGHV 102

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S N  YP   V +  D+  +  +
Sbjct: 103 VILQSENADYPPLHVTDNDDLIILGVV 129


>gi|229918124|ref|YP_002886770.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b]
 gi|229469553|gb|ACQ71325.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b]
          Length = 179

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I R+  +  LT   LA +  L     ++ +R         PS E++F +L     
Sbjct: 2  EVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLS-----SPSLETLFDLLNVLGS 56

Query: 68 TICQLLDLP 76
          +  +  D  
Sbjct: 57 SPKEFFDEE 65


>gi|254251221|ref|ZP_04944539.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158]
 gi|124893830|gb|EAY67710.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158]
          Length = 189

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 10  EVAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRV-----SPSVGSLKKLLECIPM 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + RT   +  E+P L                        V  P      
Sbjct: 65  SLAEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGAGVKDRNMCIMREVYQP-HADTG 123

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             + A    +          L +   G   +L+       GD    + R          +
Sbjct: 124 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 171

Query: 188 RRGRSI-DLMSLNC 200
                + +++S N 
Sbjct: 172 PSAEHVCEVVSANS 185


>gi|237797707|ref|ZP_04586168.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331020557|gb|EGI00614.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 146

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M       GD+L+++ +     GD ++       I  + L   RG  
Sbjct: 44  EPHVYLARVEDEGMRDAAMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGEV 101

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S N  YP   V +  D+  +  +
Sbjct: 102 VILESENADYPPLRVTDNDDLIILGVV 128


>gi|288961553|ref|YP_003451863.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913833|dbj|BAI75319.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 188

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   + ++ E+H L+   LA++AG+   + +  ++         PS  S+ K+L     
Sbjct: 4  DVGARLKQIREQHGLSQRALAQRAGVTNGTISLIEQNRS-----SPSVSSLRKVLQGIPM 58

Query: 68 TICQLLDLPFSDGRTT 83
          ++ +            
Sbjct: 59 SLAEFFSSDDLPPPEQ 74


>gi|307292241|ref|ZP_07572105.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306496747|gb|EFM66300.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
          Length = 418

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 6/146 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + + + EAI    E    T   LA K G+  +  +K ++       R  S E +  
Sbjct: 1   MNQVNQRDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RRLSAEKLNL 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119
           +L +  E I  +  +            + + L+          F+   + P G     V 
Sbjct: 56  VLDSLQEEIVPVNRVLIDYLTIHFFSNQHLKLIEEIIGMPIERFEELDYAPKGYIGQYVW 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145
              I   ++    ++        Q  
Sbjct: 116 NQVITIRYSIDDTVKGTVMEFSGQGC 141


>gi|126207981|ref|YP_001053206.1| hypothetical protein APL_0497 [Actinobacillus pleuropneumoniae L20]
 gi|126096773|gb|ABN73601.1| hypothetical protein APL_0497 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 88

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG------RSIDLMSLNC 200
           M P +  GDI+I++  ++ + G+ +       +   K             +  +L+ LN 
Sbjct: 1   MEPEFIAGDIVIIDPRVEPHAGEFVAAINGDYEATFKKYRPLEDLDEYGRQHFELVPLNP 60

Query: 201 CYPVDTVEMSDIEWIARIL 219
            +   +    +I  I  ++
Sbjct: 61  DWHSMSSLKQEIRIIGTMV 79


>gi|120599870|ref|YP_964444.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146292194|ref|YP_001182618.1| XRE family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120559963|gb|ABM25890.1| transcriptional regulator, XRE family with cupin sensor [Shewanella
           sp. W3-18-1]
 gi|145563884|gb|ABP74819.1| transcriptional regulator, XRE family with cupin sensor [Shewanella
           putrefaciens CN-32]
          Length = 182

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++     +  +     +   +   LL               +P           P     
Sbjct: 57  SLVDFFSIEATSECEQKVVYRSDELLDIGTGPLEFKLIGRDYPNRAMSVMSETYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +   Q ++     +          GD + +     +  GD                 
Sbjct: 117 GEEMLKHQGEEAAMVIEGKF---ELTVGDEVYI-----LETGDSYYFNSELPH----RFR 164

Query: 187 SRRGRSIDLMSL 198
           +       L+S 
Sbjct: 165 NPFDEPCRLISA 176


>gi|167754509|ref|ZP_02426636.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402]
 gi|237733852|ref|ZP_04564333.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705341|gb|EDS19920.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402]
 gi|229383190|gb|EEO33281.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 242

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +++  ++  L+   LA + G+   S +K +          P  E I +I      ++ 
Sbjct: 5   DNLNKYRKQKGLSQEELAFRLGVSRQSVSKWESGQST-----PELERIIEIADLFGISLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           +L+    +D  T +++E    + +         F  G  P
Sbjct: 60  ELIGHESNDYVTVDREELRSVVRHLFTYEYKSKFKIGNVP 99


>gi|302523093|ref|ZP_07275435.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302431988|gb|EFL03804.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 191

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 6/137 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  R  LT S LA  AG+     ++ +R         PS  ++ K+  A    
Sbjct: 12  LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGN-----PSYTTLIKLADALRVP 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPH 127
           +    D                            +        G        +P   S  
Sbjct: 67  VGAFFDGSEDAWEPAAVVRAGGRRRLSLSDEGLVYELLTPSLHGRLGMMRAEIPPGYSNA 126

Query: 128 NGIYAIQTQDTRHKTQD 144
              +  + ++     + 
Sbjct: 127 LAPHRHEGEEVMLLLEG 143


>gi|318057227|ref|ZP_07975950.1| hypothetical protein SSA3_04771 [Streptomyces sp. SA3_actG]
 gi|318075235|ref|ZP_07982567.1| hypothetical protein SSA3_00560 [Streptomyces sp. SA3_actF]
          Length = 210

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 6/137 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  R  LT S LA  AG+     ++ +R         PS  ++ K+  A    
Sbjct: 31  LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGN-----PSYTTLIKLADALRVP 85

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPH 127
           +    D                            +        G        +P   S  
Sbjct: 86  VGAFFDGSEDAWEPAAVVRAGGRRRLSLSDEGLVYELLTPSLHGRLGMMRAEIPPGYSNA 145

Query: 128 NGIYAIQTQDTRHKTQD 144
              +  + ++     + 
Sbjct: 146 LAPHRHEGEEVMLLLEG 162


>gi|149920158|ref|ZP_01908630.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149818924|gb|EDM78363.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 113

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +H+++ + +        L+   LA KA +   +  + ++ G       PS  ++ K+  
Sbjct: 12 LTHEELGDRVRERRRELGLSQEKLAEKAQVSKETIGRLEQGGGT-----PSLFTVRKVAN 66

Query: 64 ATNET 68
          A  ET
Sbjct: 67 ALGET 71


>gi|320089228|emb|CBY98981.1| K03503 DNA polymerase V [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 79

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              GD+++++ A +   G+ ++ +   G+   K L       I L+ +N  YP       
Sbjct: 6   LHSGDLMVVDKAEKPLQGNIVIAETD-GEFTVKRLQLTP--RIALLPMNPAYPTLY--PE 60

Query: 211 DIEWIARI 218
           D++    +
Sbjct: 61  DLQIFGVV 68


>gi|223985675|ref|ZP_03635723.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM
          12042]
 gi|223962366|gb|EEF66830.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM
          12042]
          Length = 283

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + + ++  + I  +  +   T   L  K G+   + +K +R        +P    + +
Sbjct: 11 MQNLTEERTGQLIRELRLKAGWTQKELGMKIGISDKAISKWERGLS-----FPDITLLPR 65

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKE 87
          +    + ++ +++            ++
Sbjct: 66 LAEVFHVSVGEIISGQQLSEPALNPEQ 92


>gi|153954565|ref|YP_001395330.1| hypothetical protein CKL_1947 [Clostridium kluyveri DSM 555]
 gi|219855059|ref|YP_002472181.1| hypothetical protein CKR_1716 [Clostridium kluyveri NBRC 12016]
 gi|146347423|gb|EDK33959.1| Phage-related protein [Clostridium kluyveri DSM 555]
 gi|219568783|dbj|BAH06767.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 261

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I  + E  NLT   LA K G+ P +  + +        R PS E++ KI  A + 
Sbjct: 2  NVGAKIKEIRESKNLTQKQLAEKIGVTPVTITRYENN-----KREPSIETLNKIAKALDV 56

Query: 68 TICQ 71
          TI  
Sbjct: 57 TIND 60


>gi|323189774|gb|EFZ75052.1| repressor protein C2 domain protein [Escherichia coli RN587/1]
 gi|327250312|gb|EGE62031.1| repressor protein C2 domain protein [Escherichia coli STEC_7v]
          Length = 86

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           M+  YR GD++ ++  +    GD ++     TG+   K LI    +   L +LN  +P  
Sbjct: 1   MIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEP 59

Query: 206 TVEMS-DIEWIARIL 219
            ++++ +   I  ++
Sbjct: 60  YIKINGNCSIIGTVI 74


>gi|320335423|ref|YP_004172134.1| peptidase S24/S26A/S26B, conserved region [Deinococcus maricopensis
           DSM 21211]
 gi|319756712|gb|ADV68469.1| Peptidase S24/S26A/S26B, conserved region [Deinococcus maricopensis
           DSM 21211]
          Length = 154

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 9/117 (7%)

Query: 108 VFPTGNKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSA 162
               G   +        R      Y              SM          G  +++++ 
Sbjct: 21  FISAGVPLDATPFERLGRLTVPRAYRRPG-MFAFAVTGDSMTAPGGAGLPHGAYVLVDTH 79

Query: 163 IQVNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             +     +      G + VAK L   RGR   + S N  YP   +   D+  + RI
Sbjct: 80  DLITQTGHVYAFCLPGGEYVAKRLRLHRGRP-AMYSDNPTYPPAPLTP-DVRRVGRI 134


>gi|218561643|ref|YP_002394555.1| Protein impA [Contains: Protein impA'] (modular protein)
           [Escherichia fergusonii ATCC 35469]
 gi|218350157|emb|CAQ86919.1| Protein impA [Contains: Protein impA'] (modular protein)
           [Escherichia fergusonii]
          Length = 235

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           + V        H+      +     +    SM       GD+L+++SA +   GD ++  
Sbjct: 126 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 182

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              G+   K         + L  +N  +     +  +++    +
Sbjct: 183 SMQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 224


>gi|152973662|ref|YP_001338702.1| putative ImpA protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|294496737|ref|YP_003560430.1| putative ImpA protein [Klebsiella pneumoniae]
 gi|150958444|gb|ABR80472.1| putative ImpA protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|293339446|gb|ADE44000.1| putative ImpA protein [Klebsiella pneumoniae]
          Length = 143

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 6/104 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           + V        H+      +     +    SM       GD+L+++ A +   GD ++  
Sbjct: 34  DYVE--SDLDLHDYCIRHPSATYYLRASGDSMSDGSLYNGDLLVVDCAEKPRHGDIVV-A 90

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              G+   K         + L  +N  +     +  D++    +
Sbjct: 91  SVQGEFTVK--RLLLTPRLTLQPMNAAWSPIYPDPDDLDIFGVV 132


>gi|167588944|ref|ZP_02381332.1| transcriptional regulator, XRE family protein [Burkholderia
           ubonensis Bu]
          Length = 183

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVAERLRYVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + RT   +  E+P L                        V  P      
Sbjct: 59  SLAEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGAGVKDRNMCIMREVYQP-HADTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             + A    +          L +   G   +L+       GD    + R          +
Sbjct: 118 PEMLAHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                + +++S N 
Sbjct: 166 PSAEQVCEVVSANS 179


>gi|313669568|ref|YP_004049993.1| peptidase S24/S26A/S26B [Sulfuricurvum kujiense DSM 16994]
 gi|313156765|gb|ADR35440.1| Peptidase S24/S26A/S26B, conserved region [Sulfuricurvum kujiense
           DSM 16994]
          Length = 124

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
           ++     K    SM P+ +   +++ + + +      + +      +  K          
Sbjct: 34  KSSLFVIKVDGKSMQPVIKDRALVVADLSQKKLEDGGIYLVYYDNKMWIKQAKEILTGM- 92

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
            L+S+N  Y     + +++  +A+ +
Sbjct: 93  TLVSINQAYSHLVYQEAEVRVVAKAV 118


>gi|299800882|gb|ADJ51146.1| SOS mutagenesis and repair protein D [Klebsiella pneumoniae]
          Length = 227

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           + V        H+      +     +    SM       GD+L+++SA +   GD ++  
Sbjct: 118 DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 174

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              G+   K         + L  +N  +     +  +++    +
Sbjct: 175 SMQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 216


>gi|220928578|ref|YP_002505487.1| XRE family transcriptional regulator [Clostridium cellulolyticum
           H10]
 gi|219998906|gb|ACL75507.1| plasmid maintenance system antidote protein, XRE family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 61/231 (26%), Gaps = 28/231 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA--- 64
           +I + I+++  +  +TP  LAR  G+        +               + K L     
Sbjct: 3   RIGQEINKLRLKKGMTPKQLARALGVSEKFVLDIESGKKIVS--DDMIGRVSKALDFELG 60

Query: 65  -----------TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
                      T                     E    +                +    
Sbjct: 61  PIGLFASDDKLTPGNGNDANVRSVKKVAPIVSNEPVQQVWDDAFGNILKTVPVYDYKMDR 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
             +   +P  ++   G YA +                  KGD        Q+   D + +
Sbjct: 121 IIDKKLLPIEKNRVEG-YAKEKVFYLDIEDTDMSGFRIFKGDRAFGILENQI-DKDGIYL 178

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYP-----VDTVEMSDIEWIARIL 219
               G+   + +    G  + L+     Y       +TV   +I+ IAR++
Sbjct: 179 IEYNGERAVRQVKKLHGNKLLLV-----YNRGTLITETVGTKEIKVIARLI 224


>gi|255652577|ref|ZP_05399479.1| putative phage DNA-binding protein [Clostridium difficile
           QCD-37x79]
          Length = 278

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 13/150 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I    +   +T   LA KAG+   +    +R       R P+ + + K+  A + +
Sbjct: 3   IGENIKTFRKDRRMTQEQLAEKAGISRVALGNYER-----EERVPNLDILEKLATALDTS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              +++L             EI  L           +        K +      I +PH+
Sbjct: 58  TDIIMNLHKF-------SLDEIHELNITDGNDIPLTEEKYAYIKEKIDFYTSEIIEAPHH 110

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
            + +   +   +                +I
Sbjct: 111 ALESYYQRAFMYAILGD-YENAIADYTKVI 139


>gi|99081161|ref|YP_613315.1| putative phage repressor [Ruegeria sp. TM1040]
 gi|99037441|gb|ABF64053.1| hypothetical protein TM1040_1320 [Ruegeria sp. TM1040]
          Length = 211

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 31/224 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M          AI         +   +A  AG+             +G+++  + +   +
Sbjct: 1   MQQTFRDAFLAAIKT----TGKSMRQVALDAGVSYEQLKNL----SQGKSKSTNVDDAIR 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I A+    +             T    +    +               +P G     V  
Sbjct: 53  IAASFGTNL------ENFLEGNTAPSVRPTISIAGTVGAGAQVPVFDAYPKGGGP-QVEC 105

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-----IQVNCGDRLLIKP 175
           P   SPH             + +  SM P+Y   D+L  +            G R + + 
Sbjct: 106 PPGLSPHG--------IVAVEVEGDSMEPVYSDRDLLFYSRNGHDSVPSDIIGHRCVCED 157

Query: 176 RTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             G    K + +        L+SLN            ++W AR+
Sbjct: 158 EDGMGWVKQVKAGDEPGLFHLISLNPGANNIW--NVRLKWAARV 199


>gi|290956608|ref|YP_003487790.1| UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22]
 gi|260646134|emb|CBG69227.1| putative UDP-N-acetylglucosamine transferase [Streptomyces
          scabiei 87.22]
          Length = 509

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++I + I    +    T S LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 7  ERIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|226946801|ref|YP_002801874.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ]
 gi|226721728|gb|ACO80899.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ]
          Length = 182

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 41/138 (29%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSP 126
           ++ +   L      +     +                     P     + +V  P     
Sbjct: 57  SLMEFFSLDLEAEASAPVVYRAAEQAELSRGLLSMRLIGKDHPDRALTFLSVTYPPGADS 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +     ++     + 
Sbjct: 117 GEALLLRDGEEAGILVEG 134


>gi|325977288|ref|YP_004287004.1| HTH-type transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177216|emb|CBZ47260.1| Uncharacterized HTH-type transcriptional regulator Mb0023
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 210

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 48/161 (29%), Gaps = 9/161 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  +  +   + + ++ ++  +T + LA   G+   + +K +         + + + I +
Sbjct: 1   MNDYLIQNFGKNVAQLRKKKGVTQAELAEVIGVKKAAISKIELGTS--YPTFANLDKIAR 58

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFPTGNKWN 116
              AT   +         +    +  +          + S           +  T  + +
Sbjct: 59  YFKATPNELFGTSTDIELERAVIKTDKYSEKAEKIIRAVSKIEEYSEKADRILYTLERID 118

Query: 117 TVGVPEIRSP---HNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
            +      S    +  IY +         +     PLYR  
Sbjct: 119 ELERILDSSQDYSNEVIYILDRLTYAPIMETDKGEPLYRDD 159


>gi|117165275|emb|CAJ88837.1| putative transcriptional regulators [Streptomyces ambofaciens ATCC
           23877]
          Length = 192

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 46/159 (28%), Gaps = 10/159 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESIFKI 61
           ++   +  +      +   LA ++G+  ++ ++++R          +        ++ ++
Sbjct: 14  RLAARLAELRAERGWSLGELAERSGVSRSTLSRAERAETSPTASLLNRLCAVYGRTMSRL 73

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L+        L+                   +  P +G  G    G    G        P
Sbjct: 74  LSEVEAEPALLVRAAEQPRWEDRSAGFVRRSVSPPHAGLRGELVEGRLAAGADIAY-DRP 132

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
            +      ++ ++      +     +      GD L + 
Sbjct: 133 PVPGLEQHVWVLEG---ALEVTAQDVEHHLGTGDCLRMR 168


>gi|83952999|ref|ZP_00961721.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83841967|gb|EAP81135.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 183

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 35/140 (25%), Gaps = 7/140 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +  + E   L+   LA KAGL   + +  ++         PS  S+  +L A   
Sbjct: 2   DIGQRLRSIREERGLSQRELATKAGLTNGTISLIEKNKT-----SPSVASLKSLLDAIPI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125
           ++ +                +       P                +         P    
Sbjct: 57  SMAEFFSTLEDTQSPKVFYRESEFTKVSPTYDGQVSLRQLGNAEQHSLQVLHETYPPGAD 116

Query: 126 PHNGIYAIQTQDTRHKTQDT 145
               +   + ++        
Sbjct: 117 TGPELLVHEGEEAGVVISGE 136


>gi|261208780|ref|ZP_05923217.1| replication initiation factor [Enterococcus faecium TC 6]
 gi|289565535|ref|ZP_06445982.1| replication initiation factor [Enterococcus faecium D344SRF]
 gi|294614440|ref|ZP_06694356.1| replication initiation factor family [Enterococcus faecium E1636]
 gi|294617958|ref|ZP_06697563.1| putative phage replication protein [Enterococcus faecium E1679]
 gi|260077282|gb|EEW65002.1| replication initiation factor [Enterococcus faecium TC 6]
 gi|289162617|gb|EFD10470.1| replication initiation factor [Enterococcus faecium D344SRF]
 gi|291592748|gb|EFF24341.1| replication initiation factor family [Enterococcus faecium E1636]
 gi|291595767|gb|EFF27055.1| putative phage replication protein [Enterococcus faecium E1679]
          Length = 410

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 6/146 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   + EAI    E    T   LA K G+  +  +K ++       R  S E +  
Sbjct: 1   MNQVNQHDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RQLSEEKLNL 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119
           +L +  E +  +  +            + + L+          F+   + P G     V 
Sbjct: 56  VLDSLQEEVVPVNRVLIDYLTIHFFSNQHLKLIEEIIEMPIERFEELDYAPKGYIGQYVW 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145
              I   ++   A++        Q  
Sbjct: 116 NQVITIRYSIDDAVKGTVMEFSGQGC 141


>gi|302342745|ref|YP_003807274.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301639358|gb|ADK84680.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM
           2075]
          Length = 238

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 13/226 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E          L  S +A   G+  +  +  +R                       + 
Sbjct: 12  LGERFKSFRADLGLNQSNMASLLGISQSMLSLVERGEAPMPFEAVCALLGRFPALDLRDL 71

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIRSPH 127
           +   +     D R +  +                         G+  ++      +   H
Sbjct: 72  LLGDVTNLMVDSRDSSARASAATAGLIGDDYLAVPLVGDRLAVGDDCFSWAKARRLLLIH 131

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPR---TGDIVAK 183
                 + +    +  D +M P    G I+I++          R +   R    G +  +
Sbjct: 132 RRDLGARQRFVAIRVADEAMRPTIPAGAIVIVDLDERDPRRRQRHVWAIRADADGLLAVR 191

Query: 184 VLISRRGR-SIDLMSLN-CCYPV---DTVEMSDIEWIARIL--WAS 222
            L + + R    ++S +   +P     T +  ++  + R++  W S
Sbjct: 192 RLQALKNRPGFMIVSDDFDNHPPQIAWTSDAREL-ILGRVIRLWRS 236


>gi|313905283|ref|ZP_07838650.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313469894|gb|EFR65229.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 184

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +K I   I  + +R+ LT   LA +A L     ++ +R         PS E++  ++   
Sbjct: 7  NKDIGRRIKDLRQRNGLTQQELADRAELTKGFISQLERGLG-----SPSVETLMHMIEIL 61

Query: 66 NETICQLLDLPFSD 79
                        
Sbjct: 62 GSNPADFFKDEGEQ 75


>gi|291288944|ref|YP_003517447.1| UmuD [Klebsiella pneumoniae]
 gi|290792076|gb|ADD63402.1| UmuD [Klebsiella pneumoniae]
          Length = 148

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           + V        H+      +     +    SM       GD+L+++SA +   GD ++  
Sbjct: 39  DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 95

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              G+   K         + L  +N  +     +  +++    +
Sbjct: 96  SVQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 137


>gi|156933444|ref|YP_001437360.1| hypothetical protein ESA_01262 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531698|gb|ABU76524.1| hypothetical protein ESA_01262 [Cronobacter sakazakii ATCC BAA-894]
          Length = 89

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD-TVEMSDIEWI 215
           ++++ ++     D ++     G+   K L++       L + N  YP     +  D++ +
Sbjct: 1   MLVDFSLHAKHNDIMV-ASIGGEFTIKRLVTYP--VAQLRAENPAYPPIAVYDADDLDIV 57

Query: 216 ARIL 219
             ++
Sbjct: 58  GVVI 61


>gi|159038022|ref|YP_001537275.1| XRE family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916857|gb|ABV98284.1| transcriptional regulator, XRE family [Salinispora arenicola
           CNS-205]
          Length = 191

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 7/139 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + +   +  +T + LA   G+  ++ ++ +        R PS E +  I AA   
Sbjct: 11  EIGPRLKQARAQRGVTLAELAETTGISKSTLSRLEAGQ-----RKPSLELLLPIAAAHRI 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L+ +P S       + +++      P                   +   P+    +
Sbjct: 66  PLDKLVGVPQSGDPRVRLQPRKVNGRTVLPLTQHPGSLQAWKVIIPVDQSTPEPKTHEGY 125

Query: 128 NGIYAIQTQDTRHKTQDTS 146
             +Y +  +          
Sbjct: 126 EWLYVLAGRLRL--VLGDH 142


>gi|91779152|ref|YP_554360.1| transcriptional regulator [Burkholderia xenovorans LB400]
 gi|91691812|gb|ABE35010.1| Transcriptional regulator, XRE family with Cupin sensor domain
           [Burkholderia xenovorans LB400]
          Length = 189

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 62/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  + ++H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 10  EVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +         R+   +  ++P L            S           V  P +    
Sbjct: 65  SLAEFFTFEVEVERSVVSRRADMPNLGNESIEFYLAGSSVKDRNMGILREVYQP-LSDTG 123

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +   +  +          L +   G   +L+       GD    + R          +
Sbjct: 124 PEMLEHEGHEGGVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFRN 171

Query: 188 RRGRSI-DLMSLNC 200
                + +++S N 
Sbjct: 172 PSAEHLCEIVSANS 185


>gi|117676113|ref|YP_863689.1| putative prophage repressor [Shewanella sp. ANA-3]
 gi|117614937|gb|ABK50390.1| putative prophage repressor [Shewanella sp. ANA-3]
          Length = 244

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 135 TQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                 + +  SM  +    GDILI++  +  + GD ++I     + V KVL        
Sbjct: 149 ESTFVGRARGESMTGVGIHSGDILIVSRQLTPSSGD-VIIAMYNEEFVCKVLDLSNS--- 204

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARILWAS 222
            L+S N  +   ++ + D  W   ++ AS
Sbjct: 205 RLLSANDDFEPVSIRLDDRFWCEGVVPAS 233


>gi|239943369|ref|ZP_04695306.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|239989822|ref|ZP_04710486.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           11379]
 gi|291446837|ref|ZP_06586227.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349784|gb|EFE76688.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 213

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 44/135 (32%), Gaps = 10/135 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  RH +T + LA + G++ ++ ++ +     G  R P+ E +  +       
Sbjct: 24  VGPRLRELRRRHGMTLAELAERTGINESTLSRLE-----GGTRKPTLELLLPLAEVHAVP 78

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF---PTGNKWNTVGVPEIRS 125
           + +L+  P +       +      L + P    G   +      P+              
Sbjct: 79  LDELVGAPRTGDPRIHLRPVTRDGLTYVPLSRPGGVQAHKLLIRPSPAGTE--PTLRTHE 136

Query: 126 PHNGIYAIQTQDTRH 140
               +Y +  +    
Sbjct: 137 GFEWLYVLAGRLRLI 151


>gi|116006845|ref|YP_788028.1| ImpA UV protection protein [Escherichia coli]
 gi|115500700|dbj|BAF33931.1| ImpA UV protection protein [Escherichia coli]
          Length = 145

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +    + T+   +I     +
Sbjct: 98  FTVKRLLLRPRPALEPVSDSP--ELRTLYPENICIFGIV 134


>gi|150016491|ref|YP_001308745.1| helix-turn-helix domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149902956|gb|ABR33789.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB
          8052]
          Length = 123

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I E I  + E  NL    LA  AG+   + ++ +        R P  E I K+    N
Sbjct: 2  KTIGEKIQILREERNLKQKELAELAGITEATLSRYENG-----KREPKGEIISKLANVLN 56

Query: 67 ET 68
           +
Sbjct: 57 VS 58


>gi|255013810|ref|ZP_05285936.1| hypothetical protein B2_07877 [Bacteroides sp. 2_1_7]
          Length = 226

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 52/227 (22%), Gaps = 30/227 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I +  E   ++     +++GL   + +K +  G +            KIL A  +   
Sbjct: 5   QRIRQYIENKGISKYRFYQQSGLSNGALDKGENIGSD---------KCEKILYAFPDLNS 55

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
             L             E          +             G  +  V            
Sbjct: 56  DWLLTGRGSMLKNNGLELIDNKEDIEKNELPEVNYEYK---GAPYYNVDFIGGFDLVLND 112

Query: 131 YAIQTQDT------------RHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKP 175
                                      SM P    GD + L              +    
Sbjct: 113 QTNNPDYYINFPPYNKEGVVWCNITGHSMEPELNNGDFIALKEMTDPIEYLPYGEIYGII 172

Query: 176 RTGDIVAKVLI-SRRGRSIDLMSLN--CCYPVDTVEMSDIEWIARIL 219
                  K +  S R   + L+  N    Y    + ++ I  +  +L
Sbjct: 173 TDNYRTVKRIRMSERKGFVRLIPTNKSPEYGEQEIPINMIRKVFAVL 219


>gi|331668090|ref|ZP_08368942.1| protein ImpA [Escherichia coli TA271]
 gi|331064604|gb|EGI36511.1| protein ImpA [Escherichia coli TA271]
          Length = 139

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+     +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLSLRPALEPVSDSPEF--RTLYPENICIFGVV 134


>gi|325677861|ref|ZP_08157503.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324110415|gb|EGC04589.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 180

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 58/176 (32%), Gaps = 10/176 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I    ++  +T   LA K G+   + +K +          P TE + ++ A    
Sbjct: 2   DIGENIRNARKKKGMTQEMLAEKMGVSRQAVSKWESGKG-----MPETEKLAELSALLGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  +L+ +   + ++ +    +  +      GS     S  +           P I    
Sbjct: 57  SADRLIGIRPQEEQSEKGCAVDSRIHICSHDGSITAVLSVRYSKIAAPAKNEPPYILVGV 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           +    I  + T       S     ++ + +       ++ G+R+       ++  K
Sbjct: 117 DRTG-IFGEHTVILGWYESEDEAAKELECI----ERAIDDGERIYKLSYFTEVEFK 167


>gi|167946726|ref|ZP_02533800.1| putative prophage repressor [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 118

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
           +    +  D SM P + +  I+++  A     G  ++ +   G+   +  IS       L
Sbjct: 9   ELYPLQVLDDSMEPEFPEKCIIVIEPAEVCATGAYIIAEVD-GERWFRQYISEGEGKKRL 67

Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
           ++L   YP   ++ S+ + +  I+
Sbjct: 68  VALKPGYPEIDLQGSEFKILGVIV 91


>gi|301646989|ref|ZP_07246825.1| peptidase S24-like domain protein [Escherichia coli MS 146-1]
 gi|301074834|gb|EFK89640.1| peptidase S24-like domain protein [Escherichia coli MS 146-1]
          Length = 145

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLRPRPALEPVSDSREF--RTLYPENICIFGVV 134


>gi|222530394|ref|YP_002574276.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457241|gb|ACM61503.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 105

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + E+  L+ S LA+ AG+  ++ +  +        R P+ + I KI  A + 
Sbjct: 3  DVGKRIKELREKCGLSMSKLAKIAGVGQSTLSYIENGE-----RNPTIDVIIKICNALDI 57

Query: 68 TICQLLDLPFSDGRTTE 84
          T+ +           + 
Sbjct: 58 TLVEFFGGEEKPHMESP 74


>gi|218689364|ref|YP_002397576.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|218426928|emb|CAR07787.2| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|315298577|gb|EFU57832.1| helix-turn-helix protein [Escherichia coli MS 16-3]
          Length = 178

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 43/160 (26%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSSTPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH-- 124

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           ++ I  Q                +G     +       G 
Sbjct: 125 VFVIDGQLD-LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163


>gi|192289071|ref|YP_001989676.1| phage repressor [Rhodopseudomonas palustris TIE-1]
 gi|192282820|gb|ACE99200.1| putative phage repressor [Rhodopseudomonas palustris TIE-1]
          Length = 263

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 47/199 (23%), Gaps = 13/199 (6%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
            + +  G     + +                 + +I   T      L+            
Sbjct: 71  EIEKLIGRSIKQYWRYVEGQDVP------LSILLRICEVTGIPESYLVLGQQPSEDKFVH 124

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
           KE+   +     +                     VP                        
Sbjct: 125 KERLETVFVRLLAFQASAGSGASVRE---DEERTVPFANEALERAGVRPQNARLLYAAGD 181

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC-YPV 204
           SM P    GD L+ +         R+ +      ++ K L     R +   + N   YP 
Sbjct: 182 SMRPTIEDGDPLLADVGDTDIIDGRIYVFSIGDQVLVKRLRRLGSRLLM-RADNRDLYPD 240

Query: 205 -DTVEM-SDIEWIARILWA 221
            + V M   +  I R+ W 
Sbjct: 241 EEEVPMIEPVRIIGRVKWV 259


>gi|254498607|ref|ZP_05111326.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254352147|gb|EET10963.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 212

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 35/228 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    +K + E +  +  +   +    A K G    +    +    +GR   P    +  
Sbjct: 1   MNREIYKIVGERLKSVRMQLGFSRREFADKCGFSAATLQAWE----DGRYPVPKKSMVKY 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    +  +    +   +      +   +  +       +                    
Sbjct: 57  VQTLFDCGLATSPEWFLNGEGLPPRPINKFSMSTIAEKDA-------------------- 96

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI-----LNSAIQVNCGDRLLIKP 175
             I    N               D +MLP Y  GD +      ++ A +   G   +IK 
Sbjct: 97  --ILREINFFETENKNPIITVITDDTMLPFYSVGDYVGGKLVPVDYAERYI-GTFCIIKL 153

Query: 176 RTGDIVAKVLIS-RRGRSIDLMSLN--CCYPVDTVEMSDIEWIARILW 220
            TG+ V + L         +L+S N     PV  +   ++  IA+++W
Sbjct: 154 VTGETVVRKLRPGSEEGRFNLISTNLDTNSPVACLLNCEVAQIAQVIW 201


>gi|167464931|ref|ZP_02330020.1| Transcriptional regulator, xre family protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 57

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +   + + R+ ++  ++   LA K  +   + +  +R       R+P+ E++ KI    
Sbjct: 3  ENFGQNVARLRKKKGMSQEELAEKLDVKKQTISNIERGV-----RYPTFENLEKIAQLF 56


>gi|153816388|ref|ZP_01969056.1| hypothetical protein RUMTOR_02640 [Ruminococcus torques ATCC 27756]
 gi|317500743|ref|ZP_07958960.1| hypothetical protein HMPREF1026_00903 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089779|ref|ZP_08338673.1| hypothetical protein HMPREF1025_02256 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846276|gb|EDK23194.1| hypothetical protein RUMTOR_02640 [Ruminococcus torques ATCC 27756]
 gi|316897836|gb|EFV19890.1| hypothetical protein HMPREF1026_00903 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403662|gb|EGG83217.1| hypothetical protein HMPREF1025_02256 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 245

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 37/247 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI-F 59
           MT      I   I +  +  N++   LA    + P++    +      +        I  
Sbjct: 1   MTM-----IRNKIRKRRQELNMSRVQLAEAVQVTPSAIANYENGISYPKPDIFVALMITL 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-----FFDSGVFPTGNK 114
           ++ A                 +    +++   L  +    S G           +    +
Sbjct: 56  EVDANYFYEEYVRNREIAIACKRAITQDEIYALEKYRQLTSSGKKLVRMVIEEEYSRMQQ 115

Query: 115 WNTVGVPEIRSPHNGIYAI------------------QTQDTRHKTQDTSMLPLYRKGDI 156
              +  P ++    GI AI                     +   + Q     P++R GD+
Sbjct: 116 EEWISFPCMKDMGGGIDAICKKRAEYFEFRVRKENMIDGMEFCLQLQTDRYEPVFRNGDV 175

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW-- 214
           + L +  +    +         ++    L+ +      L +LN       V+  D     
Sbjct: 176 IAL-TEKKAGQNEI--GIFLVNEVYYLRLLYQENEEKKLKALNVLEQDVVVKPKDRFICM 232

Query: 215 ---IARI 218
              + ++
Sbjct: 233 GTVLGKV 239


>gi|42523852|ref|NP_969232.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100]
 gi|39576059|emb|CAE80225.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100]
          Length = 188

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 17/177 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   I  + ++  LT + LA+ AG+  ++    +          PS  ++ K+ AA  
Sbjct: 9   QNLAAQITELRKKRQLTQAALAKLAGVPRSTLTNMESGMGN-----PSLVNLAKVCAALQ 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +  +LL  P S  +   K E                    +   G   + + +      
Sbjct: 64  VSFEELLATPRSQTKLIRKDEIPANKKAKGNVTVYKLLPDPI--PGMAIDRMELEVGARM 121

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVA 182
               ++  T++  H  Q             ++++  + ++  GD L     +     
Sbjct: 122 GGIPHSSGTKEYLHCVQG---------QMTVVVSGESFELKPGDVLAFPGDSAHNYV 169


>gi|319938782|ref|ZP_08013146.1| XRE family transcriptional regulator [Streptococcus anginosus
          1_2_62CV]
 gi|319811832|gb|EFW08098.1| XRE family transcriptional regulator [Streptococcus anginosus
          1_2_62CV]
          Length = 91

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   +  +  R  L  + LA+KAG+   + +  +R         PS     KI     E
Sbjct: 2  KLENRLKELRARDGLNQTELAKKAGVSRQTVSLIERGEY-----APSVIIALKIAHIFGE 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +  +  L  +     ++  +     YF 
Sbjct: 57 NVENVFYLKENSDEKMDENYRFTSSEYFA 85


>gi|310779760|ref|YP_003968092.1| phage repressor [Ilyobacter polytropus DSM 2926]
 gi|309749083|gb|ADO83744.1| putative phage repressor [Ilyobacter polytropus DSM 2926]
          Length = 237

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 32/233 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +    E+++     +A K     ++    +        R P  + I K + A N   
Sbjct: 6   GKFLIEFMEKNDYKLEYVAEKTNTSFSTIGHYRTG-----RRLPKDDFIEKFIKAFNFNE 60

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------------FFDSGVFPTGNKWN 116
            +  ++  +  +     E    L  F                        G    G  + 
Sbjct: 61  HEKKNIYDAVLKDRTPPEILDKLERFERYSKIENAKGNARRIDTVKVPLYGTASAGPGYL 120

Query: 117 T--VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK---GDILILNS----AIQVNC 167
              + + E   P       +      K +  SM    +    G + + +      I+   
Sbjct: 121 NLDIELKEFIIPKEDY---REGRFTVKVEGNSMTGPIKSIPCGSVALADPNMCTDIEELI 177

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
           G   +      +   K L   R   I L+S N       V     ++   R++
Sbjct: 178 GKVCV-FTYNDETFIKQLTVDRQNLIHLVSFNPEEQDIIVLNPKMLKCNGRVV 229


>gi|296274196|ref|YP_003656827.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299]
 gi|296098370|gb|ADG94320.1| putative phage repressor [Arcobacter nitrofigilis DSM 7299]
          Length = 119

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
           +           SM P+     ++I + + +    + + +      +  K       ++ 
Sbjct: 31  EKSLFAILVDGKSMEPVINHKAVIIADLSNKKLEDENVYLVYYENKMWVKKYD-LENKTF 89

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
             +S+N  +     +  +I  +A+++
Sbjct: 90  --ISINPNFSHLVYKEEEIHLVAKVI 113


>gi|213967337|ref|ZP_03395485.1| RulA protein [Pseudomonas syringae pv. tomato T1]
 gi|301381696|ref|ZP_07230114.1| RulA protein, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302059642|ref|ZP_07251183.1| RulA protein, putative [Pseudomonas syringae pv. tomato K40]
 gi|302131534|ref|ZP_07257524.1| RulA protein, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927638|gb|EEB61185.1| RulA protein [Pseudomonas syringae pv. tomato T1]
 gi|331019559|gb|EGH99615.1| RulA protein, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 147

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M      +GD+L+++ +     GD ++    T  I  + L   RG  
Sbjct: 45  EPHVYLARVEDEGMQGCGMSRGDMLVVDRSQYAEHGDIVVASLNTRQI-CRRLH-MRGHV 102

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S N  YP   V +  D+  +  +
Sbjct: 103 VILQSENADYPPLHVTDNDDLIILGVV 129


>gi|307545572|ref|YP_003898051.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217596|emb|CBV42866.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581]
          Length = 200

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 53/199 (26%), Gaps = 20/199 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   + ++ +   L+   LA++A +  ++ +  ++  +      PS  S+ KIL A   
Sbjct: 6   DVGARLRQLRQERQLSQRELAKRAQVTNSTISLIEQNSV-----SPSVSSLKKILDALPV 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +I                + +E+  +      S     +              P      
Sbjct: 61  SITAFFAGEEPSHPRPFYRAEELTEIGD-GVLSWRLVAARRPDRRMSVLHERYPPGADSG 119

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +     ++                   + +     ++ GD      R          +
Sbjct: 120 EDMLEHDGEEGGVVISGHI---EITVNGEVAV-----LSAGDAYYFDSRLPH----RFRN 167

Query: 188 RRGRSIDLMSLN--CCYPV 204
                  ++S N    +  
Sbjct: 168 AGDTECVIVSANTPPSFSD 186


>gi|319425493|gb|ADV53567.1| Cupin 2 conserved barrel domain protein [Shewanella putrefaciens
           200]
          Length = 182

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 18/192 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLSGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSP 126
           ++     +  +     +   +   LL               +P           P     
Sbjct: 57  SLVDFFSIEATSECEQKVVYRSDELLDIGTGPLEFKLIGRDYPNRAMSVMSETYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +   Q ++     +          GD + +     +  GD                 
Sbjct: 117 GEEMLKHQGEEAAMVIEGKF---ELTVGDEVYI-----LEAGDSYYFNSELPH----RFR 164

Query: 187 SRRGRSIDLMSL 198
           +       L+S 
Sbjct: 165 NPFDEPCRLISA 176


>gi|116669644|ref|YP_830577.1| XRE family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609753|gb|ABK02477.1| transcriptional regulator, XRE family with cupin sensor
           [Arthrobacter sp. FB24]
          Length = 199

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 37/139 (26%), Gaps = 8/139 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  M +   +T + L+   GL     ++ +R         PS  ++ ++    +  
Sbjct: 18  VGNKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLAN-----PSFTTLAQLAHGLDVP 72

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRS 125
           + +             +K     L        G      + P  +       +  P    
Sbjct: 73  VGRFFIGQDESKSPVVRKSDRRNLKNVTRESVGEAVHELLTPNRDGNIEAQWISTPPGHD 132

Query: 126 PHNGIYAIQTQDTRHKTQD 144
                +    ++  +    
Sbjct: 133 TSGTPFTHSGEEFCYIISG 151


>gi|215486671|ref|YP_002329102.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312969257|ref|ZP_07783462.1| helix-turn-helix family protein [Escherichia coli 2362-75]
 gi|215264743|emb|CAS09124.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312286144|gb|EFR14059.1| helix-turn-helix family protein [Escherichia coli 2362-75]
          Length = 178

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 43/160 (26%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH-- 124

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           ++ I  Q                +G     +       G 
Sbjct: 125 VFVIDGQLD-LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163


>gi|182676898|ref|YP_001831045.1| peptidase S24/S26 domain-containing protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636528|gb|ACB97301.1| peptidase S24 and S26 domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 149

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            + E    ++ +   Q      +    SM       GD+L+++ ++    GD +++    
Sbjct: 38  YLDESIDLNDLLIRNQPATFLWRVDGHSMREAGIFHGDLLVVDRSLAPADGDIVVVIVN- 96

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPV-DTV-EMSDIEWIARI 218
           G+   K L  R+G+ + L   N  YP    + E  +IE    +
Sbjct: 97  GERSLKRLQIRKGQ-LTLSFENKDYPEGLALHEGDEIEIWGVV 138


>gi|301066067|ref|YP_003788090.1| transcriptional regulator [Lactobacillus casei str. Zhang]
 gi|300438474|gb|ADK18240.1| transcriptional regulator [Lactobacillus casei str. Zhang]
          Length = 187

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I         T S LA+KAG+  T+ +  +R       R PS E + K+         
Sbjct: 3  NRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGT-----RTPSAEVLKKLADIFETNTA 57

Query: 71 QLL 73
           L+
Sbjct: 58 YLM 60


>gi|296156536|ref|ZP_06839374.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295893135|gb|EFG72915.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 183

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 62/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  + ++H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +         R+   +  ++P L            S           V  P +    
Sbjct: 59  SLAEFFTFEVEVERSVVSRRADMPNLGNESIEFYLAGSSVKDRNMGILREVYQP-LSDTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +   +  +          L +   G   +L+       GD    + R          +
Sbjct: 118 PEMLEHEGHEGGVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                + +++S N 
Sbjct: 166 PSAEHLCEIVSANS 179


>gi|310778021|ref|YP_003966354.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM
           2926]
 gi|309747344|gb|ADO82006.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM
           2926]
          Length = 182

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 15/178 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I +      L+   LA +  L  +  ++ ++         PS E++ KI    +  
Sbjct: 3   LGERIKKNRNEKGLSLRDLAGRVDLSASFLSQIEQGKA-----SPSIENLKKIANCLDVR 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPH 127
           +  L++       T   ++ E   +    S +     +      N       +       
Sbjct: 58  VSYLIEDDEVKKNTDIIRKGERHFIESIDSNTKISLLTSSDIEKNMEPILYEIYPGGESG 117

Query: 128 NGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVN---CGDRLLIKPR 176
              Y    ++     +         M+    +GD L   S+ +      GD++     
Sbjct: 118 RDYYTHPGEEFIFILEGTLEIYINDMVHSLNEGDSLYFKSSQKHRFVNNGDKVARALW 175


>gi|229084370|ref|ZP_04216650.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44]
 gi|228698910|gb|EEL51615.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44]
          Length = 107

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI       
Sbjct: 2   IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIANVLQTP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL    +     + +   +         S   F  
Sbjct: 58  VDTLLHDEPAAESQLDSEWTHLVKEAMSSGVSKEQFRE 95


>gi|15800839|ref|NP_286855.1| DicA, regulator of DicB; encoded within cryptic prophage CP-933M
           [Escherichia coli O157:H7 EDL933]
 gi|254792181|ref|YP_003077018.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str.
           TW14359]
 gi|12514168|gb|AAG55466.1|AE005287_13 similar to DicA, regulator of DicB; encoded within cryptic prophage
           CP-933M [Escherichia coli O157:H7 str. EDL933]
 gi|254591581|gb|ACT70942.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str.
           TW14359]
          Length = 132

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I ++ +    + + LAR+ G+   +  +            P   S+ K++  +   +  
Sbjct: 10  RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVSGHPLHW 64

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
            L  P    +       +I         +   F   
Sbjct: 65  FLLPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEE 100


>gi|168183639|ref|ZP_02618303.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|237797020|ref|YP_002864572.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|182673224|gb|EDT85185.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|229263790|gb|ACQ54823.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 220

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 14/217 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65
           ++ + I     +  LT   LA+K G+  +  N+ +           +  S  + K +   
Sbjct: 3   RVSDKIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGKGINDI 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  + +           K  K   +     S          +      +   +P I +
Sbjct: 63  GISFEEEVSSEPKREMPINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVIGN 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
              GI+  Q +    K ++  M      KGDI       ++       +         + 
Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNDKRSVRQ 179

Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217
           L    G  I L    +SL      + V + DI+ IAR
Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212


>gi|118580799|ref|YP_902049.1| putative phage repressor [Pelobacter propionicus DSM 2379]
 gi|118503509|gb|ABK99991.1| putative phage repressor [Pelobacter propionicus DSM 2379]
          Length = 130

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKT-QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
           +P I       +         +  +   M P    GD++++++ ++    + + +    G
Sbjct: 3   LPGIAKHTGFTHTPPEGRFLRRICESDCMEPHIYSGDVVVIDTEVRNIN-EGVFMLHFGG 61

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE--WIARIL 219
               K L      +++++  N  Y  +      ++   + R++
Sbjct: 62  SDQFKRLQPVGDNAVNVICDNPHYGNEACASEVLKPLIVGRVV 104


>gi|28869324|ref|NP_791943.1| RulA protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852565|gb|AAO55638.1| RulA protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 147

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M      +GD+L+++ +     GD ++    T  I  + L   RG  
Sbjct: 45  EPHVYLARVEDEGMQGCGMSRGDMLVVDRSQYAEHGDIVVASLNTRQI-CRRLH-MRGHV 102

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S N  YP   V +  D+  +  +
Sbjct: 103 VILQSENADYPPLHVTDNDDLIILGVV 129


>gi|194437865|ref|ZP_03069959.1| protein SamA [Escherichia coli 101-1]
 gi|194423086|gb|EDX39079.1| protein SamA [Escherichia coli 101-1]
          Length = 140

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 9/125 (7%)

Query: 93  LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-Y 151
                +          FP+          +    +       +     +    SM  +  
Sbjct: 11  PTRSTAPLYTERCPAGFPSPTAD---YTEDELDLNAYCIHRPSATYFVRAIGDSMKDMGL 67

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             GD+++++ A     GD ++ +   G+   K L  +    I L+ +N           +
Sbjct: 68  YSGDLMVVDKAENPMQGDIVIAETD-GEFTVKRLQLKP--RIALLPMNSASSSLY--SEE 122

Query: 212 IEWIA 216
           ++   
Sbjct: 123 LQIFG 127


>gi|262040488|ref|ZP_06013730.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259042170|gb|EEW43199.1| SOS mutagenesis and repair protein UmuD [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 154

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           + V        H+      +     +    SM       GD+L+++SA +   GD ++  
Sbjct: 45  DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 101

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              G+   K         + L  +N  +     +  +++    +
Sbjct: 102 SVQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 143


>gi|220914053|ref|YP_002489362.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus
           A6]
 gi|219860931|gb|ACL41273.1| transcriptional regulator, XRE family [Arthrobacter
           chlorophenolicus A6]
          Length = 201

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 8/139 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  M +   +T + L+   GL     ++ +R         PS  ++ ++    +  
Sbjct: 20  VGNKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMAN-----PSFTTLAQLAHGLDIP 74

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRS 125
           + +             ++     L        G      + P  +       +  P    
Sbjct: 75  VGRFFIGQDQSRSPVVRRSARRNLQNVTRESVGEAIHELLTPDRDGTIEAQWISTPPGHD 134

Query: 126 PHNGIYAIQTQDTRHKTQD 144
                +    ++  +    
Sbjct: 135 TSATPFTHSGEEFCYIISG 153


>gi|190576850|ref|YP_001966182.1| micA(umuD) [Klebsiella pneumoniae]
 gi|110264434|gb|ABG56797.1| micA(umuD) [Klebsiella pneumoniae]
          Length = 143

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           + V        H+      +     +    SM       GD+L+++SA +   GD ++  
Sbjct: 34  DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 90

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              G+   K         + L  +N  +     +  +++    +
Sbjct: 91  SMQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 132


>gi|38703909|ref|NP_309096.2| regulatory protein [Escherichia coli O157:H7 str. Sakai]
 gi|195935171|ref|ZP_03080553.1| putative regulatory protein [Escherichia coli O157:H7 str. EC4024]
 gi|260854273|ref|YP_003228164.1| putative phage repressor protein [Escherichia coli O26:H11 str.
           11368]
 gi|261225700|ref|ZP_05939981.1| putative regulatory protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254659|ref|ZP_05947192.1| putative phage repressor protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|257752922|dbj|BAI24424.1| predicted phage repressor protein [Escherichia coli O26:H11 str.
           11368]
          Length = 133

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I ++ +    + + LAR+ G+   +  +            P   S+ K++  +   +  
Sbjct: 11  RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVSGHPLHW 65

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
            L  P    +       +I         +   F   
Sbjct: 66  FLLPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEE 101


>gi|76800121|ref|ZP_00781981.1| cI repressor [Streptococcus agalactiae 18RS21]
 gi|76584599|gb|EAO61425.1| cI repressor [Streptococcus agalactiae 18RS21]
          Length = 79

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           M PL +  D+L +  + QV+  D  +     G    K L      +  L SLN  Y    
Sbjct: 1   MEPLIQDNDLLFIKVSSQVDMNDIGI-FQVNGKNFVKKLKRDYDGAWYLQSLNKSYEEIY 59

Query: 207 VEMSD-IEWIARIL 219
           +  +D I  I  ++
Sbjct: 60  LSENDNIRTIGEVV 73


>gi|330977318|gb|EGH77271.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 182

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 6/136 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     ++
Sbjct: 4   GERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPMSM 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
            +            +   K   L+     + +              + T   P       
Sbjct: 59  VEFFSEESVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADTGE 118

Query: 129 GIYAIQTQDTRHKTQD 144
            +   + ++T    + 
Sbjct: 119 EMLVHEGEETGILVEG 134


>gi|303242187|ref|ZP_07328676.1| transcriptional repressor, LexA family [Acetivibrio cellulolyticus
           CD2]
 gi|302590269|gb|EFL60028.1| transcriptional repressor, LexA family [Acetivibrio cellulolyticus
           CD2]
          Length = 216

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 57/222 (25%), Gaps = 29/222 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             KK++  I+   +   + P+   +    G   P +         +             I
Sbjct: 11  KQKKVYSVIESFIKLKGIPPTVREIGEMVGEKTPGAVQGILNRLEQKGVIKREVGMARSI 70

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
              T+ +            + T +   ++                  F   N       P
Sbjct: 71  QLVTDTSQYMTPVYLPKIKKITNRNISDL------------------FNIYNIVKYYPFP 112

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSA--IQVNCGDRLLIKPRTG 178
                                 D S+L    +  D LI++      +  GD +L+     
Sbjct: 113 SELFKSENA---SENYFIMSCPDNSLLNSGIKYEDCLIIDRQSANSLEDGDIVLVLYD-N 168

Query: 179 DIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + +         ++ L + +     D     ++  I +++
Sbjct: 169 HALLRYFSKHEDTNNVVLKADSDLIGKDVFNKDEVMIIGKLI 210


>gi|237722102|ref|ZP_04552583.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448971|gb|EEO54762.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 237

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 63/232 (27%), Gaps = 21/232 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             ++  +   I R  +  NL   S LA    +   +           RN       + K 
Sbjct: 1   MDTNLDVLGIIKRAKQALNLKRDSELAEYLEVSRATVTNW-----GARNSIDFRLLLDKF 55

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +     L            + E     +    +            T          
Sbjct: 56  GDKVDYNWLLLGKGNPKHQPRFCQSELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANL 115

Query: 122 EIRSPHNGIYAIQT--------QDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170
           +    +   YA+           D        SM P+ + GDI+    ++S   V  G+ 
Sbjct: 116 KTLFTNKQQYALGKIWIPNISVCDGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEI 175

Query: 171 LLIKPRTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            L+         +  K +    +   + L+S N  +    +  + I  +A +
Sbjct: 176 YLVSFMIDGDEYLAVKYVNRSEKEGYLKLVSYNTHHEPMDIPFASINAMAIV 227


>gi|330986268|gb|EGH84371.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 118

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M     R GD+L+++ +     GD ++        + + L   RG  
Sbjct: 16  EPHVYLARVEDEGMQGGGMRTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDV 73

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S +  YP   V +  D+  +  +
Sbjct: 74  VILKSEHPDYPPLHVTDHDDLIILGVV 100


>gi|283784957|ref|YP_003364822.1| SOS mutagenesis and repair protein [Citrobacter rodentium ICC168]
 gi|282948411|emb|CBG87999.1| SOS mutagenesis and repair protein [Citrobacter rodentium ICC168]
          Length = 140

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 9/129 (6%)

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
              K  +   +   P  +         P     + V   +  + +  +    +     + 
Sbjct: 3   MYHKPVDSRQIVTIPLFADIVQCGFPSPAQ---DYVE--QRINLNELLIQHPSATFFVRA 57

Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              SM+      GD+L+++SA++   GD ++     G+   K L  R    + L  +N  
Sbjct: 58  AGDSMIDGGIGDGDLLVVDSALRPTHGDIVI-ASVEGEFTVKQLQLRP--VVQLNPMNSA 114

Query: 202 YPVDTVEMS 210
           +    V   
Sbjct: 115 WSPIKVSSE 123


>gi|268608967|ref|ZP_06142694.1| XRE family transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 324

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 9/116 (7%)

Query: 106 SGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ--DTRHKTQDTSMLPLYRKGDILILNSAI 163
                 G  ++    P+       +   + +  D   + +  SM P Y  GDI+ +    
Sbjct: 209 ENKVSAGIGFDLND-PDQWKAIEVVDTAEARHADFAVEVEGRSMEPDYYDGDIVYIELTS 267

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +V  G  + +  + G    K         I  +S N  Y   +    DIE   R++
Sbjct: 268 EVPIGQ-VGLFIQNGKGYIK---EAGNGCI--ISRNPEYDDISPADGDIECKGRVI 317



 Score = 38.6 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  +  + NL    LA    +  ++    +        R P    + KI      +
Sbjct: 2  LGDILKELRNKKNLYQQDLADILSVSKSTIAMWE-----TNKREPDLLMLKKIANYFEVS 56


>gi|238063042|ref|ZP_04607751.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
 gi|237884853|gb|EEP73681.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
          Length = 199

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 5/133 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+  +  +T + LA   G+  ++ ++ +     G  R PS E +  I  A   
Sbjct: 14  EVGPRLKRLRTQRGVTLTALAEATGISKSTLSRLE-----GGQRRPSLELLLPIAQAHQV 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L+  P           +        P                   T     +   +
Sbjct: 69  PLDELVGAPEVGDPRIRLVPRRANGRTVLPLTRQASSLQAWKVIIPADQTEPDLRVHEGY 128

Query: 128 NGIYAIQTQDTRH 140
             +Y +  +    
Sbjct: 129 EWLYVLSGRLRLV 141


>gi|224586148|ref|YP_002639947.1| mutagenesis by UV and mutagens-related protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224470676|gb|ACN48506.1| mutagenesis by UV and mutagens-related protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 68

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           ++++ A +   GD ++     G+   K L  +    I L+ +N  YP   +   +++   
Sbjct: 1   MVVDKAEKPLQGDIVI-AETEGEFTVKRLQLKP--RIALLPMNPAYP--VLYPEELQIFG 55

Query: 217 RIL 219
            ++
Sbjct: 56  VVI 58


>gi|269838045|ref|YP_003320273.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787308|gb|ACZ39451.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 131

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 5/114 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            ++I  AI R+ ++  L+ S LA + G+  +  ++ ++         PS   + ++    
Sbjct: 16  RQRIGPAIRRLRQQQGLSLSDLAERTGISVSYLSRLEKGRSV-----PSFTLLSRLGNEL 70

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
              I   ++            E+E+     P       F   +       +   
Sbjct: 71  GVDIGFFVETEREAQDVDRALEEELSKTSIPEDVWPEIFSLSIEARKALLDYFE 124


>gi|222098975|ref|YP_002533543.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana
           DSM 4359]
 gi|221571365|gb|ACM22177.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana
           DSM 4359]
          Length = 188

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 50/185 (27%), Gaps = 20/185 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E + ++     LT   LA +  L  +  ++ +          PS +++ +IL A   
Sbjct: 14  RIGEKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKT-----SPSIDTLERILEALGT 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +         +    +K+E+           S            +       P  ++  
Sbjct: 69  DLKHFFSDFEEERVVFKKEERVPVYDEPEGVKSEILMSGVEDKEIDPILVTLEPGAQTEE 128

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              +         + +    L               ++  GD    +        K  + 
Sbjct: 129 ESYHEGSEFGFVIQGKIDLYLDG----------KRYRLKEGDCFYYRADK-----KHYVK 173

Query: 188 RRGRS 192
             G+ 
Sbjct: 174 NPGKK 178


>gi|167648095|ref|YP_001685758.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167350525|gb|ABZ73260.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 78

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               + +   + R+ +   L+   LA   GL PT   + +R       R P+ + + + 
Sbjct: 5  PMRLGQALGINVRRLRKERGLSQEALADAVGLAPTYVGQIERG-----LRNPTLDVVERF 59

Query: 62 LAATN 66
               
Sbjct: 60 ADVLG 64


>gi|330890951|gb|EGH23612.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 182

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2   DVGGRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLRKVLGGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +            +   K   L+     + +              + T   P     
Sbjct: 57  SMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLVGKSHQGRAIAFLTETYPPGADT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +     ++T    + 
Sbjct: 117 GEEMLVHDGEETGILVEG 134


>gi|260844424|ref|YP_003222202.1| putative phage regulatory protein CI [Escherichia coli O103:H2 str.
           12009]
 gi|13360529|dbj|BAB34492.1| putative regulatory protein [Escherichia coli O157:H7 str. Sakai]
 gi|257759571|dbj|BAI31068.1| predicted phage regulatory protein CI [Escherichia coli O103:H2
           str. 12009]
 gi|320188717|gb|EFW63377.1| Putative regulatory protein [Escherichia coli O157:H7 str. EC1212]
 gi|323157248|gb|EFZ43369.1| helix-turn-helix family protein [Escherichia coli EPECa14]
 gi|326338913|gb|EGD62729.1| Putative regulatory protein [Escherichia coli O157:H7 str. 1125]
 gi|326344317|gb|EGD68076.1| Putative regulatory protein [Escherichia coli O157:H7 str. 1044]
          Length = 125

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I ++ +    + + LAR+ G+   +  +            P   S+ K++  +   +  
Sbjct: 3   RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVSGHPLHW 57

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
            L  P    +       +I         +   F   
Sbjct: 58  FLLPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEE 93


>gi|324009966|gb|EGB79185.1| helix-turn-helix protein [Escherichia coli MS 57-2]
          Length = 178

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 43/160 (26%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF---PTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQRAPGAISESTPHEKGVIEH-- 124

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           ++ I  Q                +G     +       G 
Sbjct: 125 VFVIDGQLD-LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163


>gi|256833482|ref|YP_003162209.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM
           20603]
 gi|256687013|gb|ACV09906.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM
           20603]
          Length = 141

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 7/115 (6%)

Query: 3   SFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
               +++  A  I  + ER  ++   L+   G+   + +  +R         P+++S+ K
Sbjct: 9   MTQAERVEAAATIADIRERLGISQQELSDATGISRQTISNIERGATR-----PNSKSLEK 63

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           I  A   +     D              E                      G   
Sbjct: 64  IFEALGVSDAPEFDAATEKWLVMVGTLVERIPAQRRQKAMDSTMHYLALSVGADI 118


>gi|323191579|gb|EFZ76837.1| protein samA [Escherichia coli RN587/1]
          Length = 145

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +    D ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHEDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLRPRPALEPVSDSPEF--RTLYPENICIFGVV 134


>gi|311108474|ref|YP_003981327.1| hypothetical protein AXYL_05312 [Achromobacter xylosoxidans A8]
 gi|310763163|gb|ADP18612.1| helix-turn-helix family protein 12 [Achromobacter xylosoxidans A8]
          Length = 190

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 50/161 (31%), Gaps = 20/161 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   +  + +    +   LA +AGL   + ++ +   +      P+  ++ K+  A   
Sbjct: 14  RIAGRLKALRQERGWSLDELAGRAGLSRATLSRLENAEV-----SPTASALGKLCGAYGL 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116
           T+ +L+ +   D      ++ +   +                   G   +     G +  
Sbjct: 69  TMSRLMRMVEDDFAPLVPQQAQAVWVDGSAGFRRRSVSPPAQRLAGEVLACELAAGARIA 128

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
               P     H+ +  ++ +                +GD L
Sbjct: 129 YDSSPRPGLEHH-LLMLEGEL-AITVDGQ--AHSLSQGDCL 165


>gi|312905525|ref|ZP_07764639.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|310631254|gb|EFQ14537.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
          Length = 418

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 6/146 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   + EAI    E    T   LA K G+  +  +K ++       R  S E +  
Sbjct: 1   MNQVNQHDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RRLSAEKLNL 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119
           +L +  E I  +  +            + + L+          F+   + P G     V 
Sbjct: 56  VLDSLQEEIVPVNRVLIDYLTIHFFSNQHLKLIEEIIGMPIERFEELDYAPKGYIGQYVW 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145
              I   ++    ++        Q  
Sbjct: 116 NQVITIRYSIDDTVKGTVMEFSGQGC 141


>gi|300783917|ref|YP_003764208.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299793431|gb|ADJ43806.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 211

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 55/191 (28%), Gaps = 17/191 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++   I  +     LT   LA + GL     ++ +R         PS  S+ +I  A  
Sbjct: 27  ERVGTRIRELRRSRGLTLVQLAGRTGLSHPFLSQLERGHTR-----PSMVSLDRIAKALG 81

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125
            T  +L+          +    ++              +  +   G   ++ +      +
Sbjct: 82  TTQVELIAAGAPGLPDADIGRADVLRAGEGARNQFPHGEVRLLTRGRRAFDPIEWTGTTT 141

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                +     +        ++L    K   + L++      GD +          A   
Sbjct: 142 EFGDYFRHPEDEF-VHVVGGALLLDLEKDGTVRLDA------GDSVYYP----GGTAHRW 190

Query: 186 ISRRGRSIDLM 196
            S  G    L+
Sbjct: 191 CSPDGSRFHLV 201


>gi|256397793|ref|YP_003119357.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256364019|gb|ACU77516.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM
           44928]
          Length = 200

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 5/139 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  +  R  LT + LA + G++ ++ ++ +     G  R P+ E +  +     
Sbjct: 20  DAVGPRLRELRHRRGLTLADLAERTGINESTLSRLE-----GGARKPTLELLLPLAEVYA 74

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +  L+  P +       +      +   P    G   +       + +     +    
Sbjct: 75  VPLDDLVGAPRTGDPRIHLRPVNRHGMTHIPLSQPGGVQAHKLLIPPRPDVEPDLKTHEG 134

Query: 127 HNGIYAIQTQDTRHKTQDT 145
              +Y I  +         
Sbjct: 135 FEWLYVISGRLRLLLGDQD 153


>gi|163759234|ref|ZP_02166320.1| putative prophage repressor [Hoeflea phototrophica DFL-43]
 gi|162283638|gb|EDQ33923.1| putative prophage repressor [Hoeflea phototrophica DFL-43]
          Length = 196

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 36/212 (16%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           +T + +A + GLD T++N+ +   +E      +   + ++    N     L+        
Sbjct: 1   MTQAEVAERLGLDLTNYNRLENGKVE-----LTYNRMRELADIFNVEPVDLISDS----- 50

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
                 + + +  +  +GS              W  V VP                   +
Sbjct: 51  ---SGVRTVRVRGWVEAGSWREASEWD---EQDWYDVAVPATPGLSTLSL------YGAE 98

Query: 142 TQDTSMLPLYRKGDILI----LNSAIQVNCGDRLLIKPRT----GDIVAKVLISRRGRSI 193
           T+  SM  +Y +G ++I    +    ++  G R +++        +   K L      ++
Sbjct: 99  TRGPSMNRVYPEGTVIIFTSMIERPEELEVGKRYVVEREKSDGLREATVKALARDESGNL 158

Query: 194 DLMSLNCC---YPVDTVEMSD---IEWIARIL 219
            LM  +          +       I  I R++
Sbjct: 159 WLMPDSNDPRHQEPIALGGDAGDIIRIIGRVV 190


>gi|251778147|ref|ZP_04821067.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082462|gb|EES48352.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 222

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 10/216 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I +  E++ L+   L +K G+     N  +             E + K L     
Sbjct: 3   RVGEKIKQAREKNGLSAKVLGKKLGVAEKYINDIELGRKVAN--EAFIERVSKFLKTDLN 60

Query: 68  TIC------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
            I       +L+    +  +T   K ++  +     +          +   N   T  + 
Sbjct: 61  DINMVVTDEELMKEKEAFKKTVNTKVEKSEVWTDAFASVIKNVPIYNYSLSNTKGTRELT 120

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              +   G    Q +    + ++  M         L  +  ++    + + +    G+  
Sbjct: 121 VHSNKVEGY--PQDKVLYLQIENDDMSGFRILKGDLAFSHMVKEFSNNGIFLIDHKGERK 178

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            + + S     + L+S       +T EM +I  IA+
Sbjct: 179 IRQIRSLGNSKVLLISNGGSLITETTEMKEINIIAK 214


>gi|152973797|ref|YP_001338836.1| ImpA-like protein; UV protection [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|300837030|ref|YP_003754084.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae]
 gi|329998716|ref|ZP_08303191.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
 gi|150958579|gb|ABR80606.1| ImpA-like protein; UV protection [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|299474834|gb|ADJ18658.1| DNA polymerase V subunit UmuD [Klebsiella pneumoniae]
 gi|328538586|gb|EGF64689.1| peptidase S24-like protein [Klebsiella sp. MS 92-3]
          Length = 143

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIK 174
           + V        H+      +     +    SM       GD+L+++SA +   GD ++  
Sbjct: 34  DYVE--SDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVV-A 90

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              G+   K         + L  +N  +     +  +++    +
Sbjct: 91  SVQGEFTVK--RLLLTPRLTLQPMNASWSPIYPDPDELDIFGVV 132


>gi|288941562|ref|YP_003443802.1| putative phage repressor [Allochromatium vinosum DSM 180]
 gi|288896934|gb|ADC62770.1| putative phage repressor [Allochromatium vinosum DSM 180]
          Length = 119

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
              +     M P +  G I+I+    +      +      G    +           L++
Sbjct: 18  FALRVLGDEMDPEFPDGCIIIIEPNDRCPNPSYIF-VEVEGVRWFRQYRRDADGRERLVA 76

Query: 198 LNCCYPVDTVEMSDIEWIARIL 219
           LN  YP   +   +   +  I+
Sbjct: 77  LNPLYPEIDLTGLEWSVLGVII 98


>gi|57238176|ref|YP_179426.1| signal peptidase I, putative [Campylobacter jejuni RM1221]
 gi|57166980|gb|AAW35759.1| signal peptidase I, putative [Campylobacter jejuni RM1221]
          Length = 220

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/190 (10%), Positives = 58/190 (30%), Gaps = 24/190 (12%)

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP---------LLYFPPSGSGGFF 104
           + +S+ ++            +   +   + +  +K            + +   + +  +F
Sbjct: 16  NVKSLEEVAERLGYKKNNANNWRNNKQLSAQALKKYYELKKANNSVSIHHHKDTITIRYF 75

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ-------TQDTRHKTQDTSMLPLYRKGDIL 157
                  G               +  +          TQ    K    SM P  + G  +
Sbjct: 76  PDICASAGFGNANENENFQLINIDKAFLTDVLGVPYKTQYDMIKIYGESMEPFIQNGSFI 135

Query: 158 ILNSAI----QVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLMSLNCCYPVDTVEMSDI 212
           I+++      ++   D ++ +    ++  K ++       I + S N  +    ++ S +
Sbjct: 136 IIDTTKNSLEKIRNADVVIFRDNDNELFCKRILKNAFDDDIVISSDNFNFGDKKIKKSAL 195

Query: 213 ---EWIARIL 219
               +I  ++
Sbjct: 196 KNYVFIGVVV 205


>gi|319950565|ref|ZP_08024474.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4]
 gi|319435759|gb|EFV90970.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4]
          Length = 195

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 13/147 (8%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           MT  + +    +   +  +    ++T + LA K G+ P++ ++ +        R P+ E 
Sbjct: 1   MTDPTAQTLTGVGPRLRSLRRHRDMTLAELADKTGISPSTLSRLESGQ-----RRPTLEL 55

Query: 58  IFKILAATNETICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +  +  A   T+  L+D P +            +    ++       G      V P G 
Sbjct: 56  LLPLARAHGVTLDHLVDAPPTGDPRIALRPFTTDYGATVIPLSRRPGGIQAYKFVLPRGR 115

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRH 140
             +   +  +   H+ ++ +  +    
Sbjct: 116 DDDEPHLH-VHDGHDWVFVLDGRLRLV 141


>gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp. Re1]
          Length = 190

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 49/182 (26%), Gaps = 13/182 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   K I   I  +     LT   L +K  L  +  ++ +R          S  ++ K
Sbjct: 1   MKTIKRKDIGNKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTS-----AVSITALEK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I  A    +     LP        +  ++               +               
Sbjct: 56  IAHALETELAYFFTLPQKHENLIMRSYEQEVFSVEESRVYNRLTNDTNGKVLESMLITLF 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P  +      Y  + ++  +  +    +        LI +   Q+N GD + +       
Sbjct: 116 PNQKENKVATYTHEGEEFAYVLEGILTI--------LIDDEEYQLNPGDCVHMASTIPHE 167

Query: 181 VA 182
             
Sbjct: 168 WV 169


>gi|54307386|ref|YP_128406.1| LexA repressor [Photobacterium profundum SS9]
 gi|62288352|sp|Q6LVS1|LEXA_PHOPR RecName: Full=LexA repressor
 gi|46911806|emb|CAG18604.1| putative LexA repressor [Photobacterium profundum SS9]
          Length = 192

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 3/124 (2%)

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
            + I +L      + G    G    G         E     +        D   +    S
Sbjct: 50  SRGIRVLRHDEVEAKGLPLIGRVAAGEPILAQEHVETHYEVDPALFKPRADFLLRVNGMS 109

Query: 147 MLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
           M  +    GD+L ++    V+ G  + +     D+  K L  + G  + L + N  +   
Sbjct: 110 MKDIGIMDGDLLAVHKTQDVHNGQVV-VARVDDDVTVKRLDKQ-GSQVLLHAENEDFAPI 167

Query: 206 TVEM 209
            V++
Sbjct: 168 VVDL 171


>gi|302864813|ref|YP_003833450.1| helix-turn-helix domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|315501098|ref|YP_004079985.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|302567672|gb|ADL43874.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315407717|gb|ADU05834.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 187

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 5/125 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I  +     ++ S LAR AG+   + +  +        R P  E+++ I A    
Sbjct: 14  EVGRRIRSLRTERGISLSELARLAGVGKATLSGLENGV-----RNPRLETLYAITAQLGV 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +  +L  P               L  F    +           G    +       + H
Sbjct: 69  PLTAVLATPDQAPTLRGAAVGGTLLEVFSDREATYELYRMWVTPGPAQLSPAHSSGVTEH 128

Query: 128 NGIYA 132
             +++
Sbjct: 129 VTVFS 133


>gi|20090666|ref|NP_616741.1| hypothetical protein MA1815 [Methanosarcina acetivorans C2A]
 gi|19915714|gb|AAM05221.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 187

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 15/124 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + +     + +      LT S LA++AG+      + +   ++     P   ++ K
Sbjct: 1   MQLPTPED----LKKRRNELGLTQSDLAKRAGVSQPLIARIESGDVD-----PRLSTVRK 51

Query: 61  ILAATNETICQLL------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           IL A  E   +                + E   +E+  L      S      G  P G+ 
Sbjct: 52  ILDAFEEAEKEQQIIIKDLMHSPVFHVSPEDSVEEVVNLMHIHGFSQIPVLDGGIPVGSI 111

Query: 115 WNTV 118
              +
Sbjct: 112 SEDM 115


>gi|299145162|ref|ZP_07038230.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|298515653|gb|EFI39534.1| transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 237

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 62/232 (26%), Gaps = 21/232 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             ++  +   I R  +  NL   S LA    +   +           RN       + K 
Sbjct: 1   MDTNLDVLGIIKRAKQALNLKRDSELAEYLEVSRATVTNW-----GARNSIDFRLLLDKF 55

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +     L            + E     +    +            T          
Sbjct: 56  GDKVDYNWLLLGKGNPKHQTRFCQSELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANL 115

Query: 122 EIRSPHNGIYAIQTQDT--------RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDR 170
           +    +   YA+                    SM P+ + GDI+    ++S   V  G+ 
Sbjct: 116 KTLFTNKQQYALGKILIPNISVCDGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEI 175

Query: 171 LLIKPRTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            L+         +  K +    +   + L+S N  +    +  + I  +A +
Sbjct: 176 YLVSFMIDGDEYLAVKYVNRSEKEGYLKLVSYNTHHEPMDIPFASINAMAIV 227


>gi|164685759|ref|ZP_01947326.2| hypothetical protein A35_A0745 [Coxiella burnetii 'MSU Goat Q177']
 gi|164601270|gb|EAX32065.2| hypothetical protein A35_A0745 [Coxiella burnetii 'MSU Goat Q177']
          Length = 228

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 64/208 (30%), Gaps = 20/208 (9%)

Query: 1   MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     +++  A  +    E   L+    A+K+G+  T+    +    +G       +S+
Sbjct: 1   MKRLKEERLARAKRVQAAREMTKLSRREFAKKSGIANTTLQHWE----DGEKHTLPEKSV 56

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + + A            +         +    +++   +           PT       
Sbjct: 57  RRFIKALLNLGV-HCSYDWLMHGKGPAPQYAGHVIFQEETTD--------LPTHGARQKN 107

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIK 174
              EI+       +           D +M P + +G+++    +    I+   G   ++ 
Sbjct: 108 EDEEIKEELTLFLSRNKNTVHLVVSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVL 167

Query: 175 PRTGDIVAKVLISRRGRSIDLMSL-NCC 201
            + GD++ + ++         +   N  
Sbjct: 168 VQGGDLLLRTILKGDVEGYYHLGYTNPK 195


>gi|68304976|gb|AAY89987.1| predicted phage repressor [uncultured bacterium BAC13K9BAC]
          Length = 111

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
           ++    +  D SM P + K  I+I++ +     G  + ++   G    +      G    
Sbjct: 18  SEPYALQVTDNSMEPEFPKDCIVIVDPSGSCVDGQYIFVEYD-GVRWFRRFKEIDGDKY- 75

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L+++N  YP   ++ S  + I  I+
Sbjct: 76  LLAVNDEYPEIKLDNS-YDVIGIIV 99


>gi|302037568|ref|YP_003797890.1| putative repressor LexA [Candidatus Nitrospira defluvii]
 gi|300605632|emb|CBK41965.1| putative Repressor LexA [Candidatus Nitrospira defluvii]
          Length = 181

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 47/207 (22%), Gaps = 42/207 (20%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            R      LT   LA +      +  + +                               
Sbjct: 7   KRTRLALGLTQQALADQLKRKRLAIARYEGGTR--------------------------- 39

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
                           + +       S      G+   G+    +   E           
Sbjct: 40  -----------TIPGVVEVALQSIGQSSRISLVGIVAAGDPIEPIPQTERI-EVPKSMLG 87

Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           + +    + + TSM       GD++++        G  ++      +   K        +
Sbjct: 88  RGETFALRVKGTSMRDDGILPGDVVVVQKQDVARNGQTVIALLN-DEATIKTYHR-TAGA 145

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
           I+L   N       V  +D   I  I+
Sbjct: 146 IELHPANEAMTPILVHETDTFHIEGIV 172


>gi|320321508|gb|EFW77617.1| putative ultraviolet light resistance B protein RuvA [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 142

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 6/107 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +    P        I A        + +  SM       G  L+++  I    G  + + 
Sbjct: 33  DYYQAPISLDDLLNIRA--PHVFIVQVEGHSMTGAGILHGCRLVVDRTITPMSGHIV-LA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT-VEMSDIEWIARILW 220
                 + K L+   G    L S +  +P     + S+I     + W
Sbjct: 90  YVDNQPIVKRLL-NEGGKWLLASEHPDFPPLVQTDFSEITTFGVVTW 135


>gi|297539388|ref|YP_003675157.1| peptidase S24/S26A/S26B, conserved region [Methylotenera sp. 301]
 gi|297258735|gb|ADI30580.1| Peptidase S24/S26A/S26B, conserved region [Methylotenera sp. 301]
          Length = 198

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 11/109 (10%)

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDR 170
               + + + E            +          SM       GD +I+      N GD 
Sbjct: 93  SEGGDYITIDEHLVKK------PSITELIPVAGDSMRDLGILDGDTVIVEKRPLANIGDI 146

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           ++          K L   +     L+  N  +    +   +   I  ++
Sbjct: 147 VVAIID-DKFTIKTLGKEKD-LFVLIPANPDFD--IIRPREAFGIYGVV 191


>gi|317487075|ref|ZP_07945882.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316921647|gb|EFV42926.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 116

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +   I    +    T +  A K G+ P S ++ +R  +    R+P  E + ++L  + 
Sbjct: 13 VGANITARRKLKGWTQAEFAEKMGMGPDSLSRIERGTVA--PRFPRLEEMARLLECSP 68


>gi|300936711|ref|ZP_07151612.1| helix-turn-helix protein [Escherichia coli MS 21-1]
 gi|300458170|gb|EFK21663.1| helix-turn-helix protein [Escherichia coli MS 21-1]
          Length = 133

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I ++ +    + + LAR+ G+   +  +            P   S+ K++  T   +  
Sbjct: 11  RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVTGHPLHW 65

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
            L  P    +       +I         +   F   
Sbjct: 66  FLLPPEEGEQIFTPDTMKIGPRQRELLQAFSAFPEE 101


>gi|86355908|ref|YP_467800.1| LacI family transcription regulator [Rhizobium etli CFN 42]
 gi|86280010|gb|ABC89073.1| probable transcriptional regulator protein, LacI family [Rhizobium
           etli CFN 42]
          Length = 189

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I   I  +     LT   LA  +G+     ++ +R         P+   + +
Sbjct: 1   MEQELEQAIGIRIRTLRLEKGLTLDELAEASGVSRAMISRIERAEA-----SPTASLLAR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + AA   ++               +++++                +    +      V  
Sbjct: 56  VCAALGLSLSAFFAEEGQQASPLARRQEQQVWRDPETGYLRRAVSAPGTASVVDIVEVEF 115

Query: 121 PEIRSPHNGIYA 132
           P         +A
Sbjct: 116 PPGARVSFPPHA 127


>gi|159184228|ref|NP_353276.2| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|159139556|gb|AAK86061.2| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 193

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 10/135 (7%)

Query: 3   SFSHKKIWEA-----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
             +  +I E      I  +     LT   LA ++G+     ++ +R         P+   
Sbjct: 2   METEDRILERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEA-----SPTASL 56

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           + +I AA   ++               KK  +                     +      
Sbjct: 57  LARICAALGLSLSGFFAENEEAVSPLVKKRDQQLWKDPETGYVRRAISPPRVGSDVDIVE 116

Query: 118 VGVPEIRSPHNGIYA 132
           V  P         +A
Sbjct: 117 VEFPAGARVGFPPHA 131


>gi|330982364|gb|EGH80467.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 147

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +      + +D  M       GD+L+++ +     GD ++       I  + L   RG  
Sbjct: 45  EPHAYLARIEDQGMQGGGMCSGDMLVVDRSQYAEHGDIVVASLNARQI-CRRLH-MRGDV 102

Query: 193 IDLMSLNCCYPVDTV-EMSDIEWIARI 218
           + L S N  +P   V +  D+  +  +
Sbjct: 103 VILESQNPDFPPLHVTDNDDLIILGVV 129


>gi|223984327|ref|ZP_03634469.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM
           12042]
 gi|223963684|gb|EEF68054.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM
           12042]
          Length = 647

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E I R  +    T   LA+K  +   + +K +          PS + + ++      
Sbjct: 2   KLAENIQRRRKAAGWTQEQLAQKCAVSRQAVSKWEAGQSV-----PSLDKLRQLANCFGI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           ++ +L+    +       +     L+    +        G    
Sbjct: 57  SVDELVQDDPAAEPADAHQTGSPSLVELDQARQTRQRRHGWTAA 100


>gi|302388655|ref|YP_003824476.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
           16646]
 gi|302199283|gb|ADL06853.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
           16646]
          Length = 257

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 12/157 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  + +   ++ S LA KAG+  T   + ++         PS  ++  +  A   T
Sbjct: 75  IGEKIALLRQEKGISLSELAEKAGISATYLCQIEKGNA-----LPSLSTLKALAEALCMT 129

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L+      G   +K  +E  L     +   G     +    +       P +++   
Sbjct: 130 AQDLMVATSHVGYKIKKIRQERGLTQVELAKKAGVSTGLIGQIESGRVE---PSLKTLEK 186

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDI----LILNS 161
             +A+        T D  +  L R  +     L+++ 
Sbjct: 187 IAHALSLSPCYFVTDDDEIASLLRPMNPELKRLLVDP 223



 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          I  +  + N++   LAR+A L  +  ++ +R   +     PS E+I K+  A N +  
Sbjct: 7  IRNIRRKRNMSLQELARRADLSVSYLSEIERGIKQ-----PSLETIEKMANALNISKN 59


>gi|224824859|ref|ZP_03697966.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224603352|gb|EEG09528.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 182

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 54/194 (27%), Gaps = 20/194 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + ER+ L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 2   DIGPRLKLVRERYKLSQRELAKRAGVTNATISLIEQNRV-----SPSVSSLVKLLEGIPM 56

Query: 68  TICQLLDLPFSDGRTTE--KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           ++                 +  ++  L                         +  P   +
Sbjct: 57  SLADFFTFDEPPRENRYVFRPGEQPDLGNNGLRLLLVGATVQDRQMRMLRE-LYAPGADT 115

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               I   + ++     +  ++         ++       + GD                
Sbjct: 116 GPEAITHSEGEECGIVVRG-TVELTIDGQVNVL-------HAGDGYYFPSTLPH----RF 163

Query: 186 ISRRGRSIDLMSLN 199
            +      +++S N
Sbjct: 164 RNIGQDEAEIISAN 177


>gi|317132933|ref|YP_004092247.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
 gi|315470912|gb|ADU27516.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
          Length = 262

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 5/109 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  + ++  L+   LA   G+   + +K +    +     P  + +  +      ++ 
Sbjct: 5   ERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQ-----PDMDKLVLLSKLFGISLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +L+      G    +    +    +    +           G     V 
Sbjct: 60  ELVKGKADAGPREFRFGLPVYHYEYKSKHTIFGIPLFHVNVGWGRPYVA 108


>gi|294492433|gb|ADE91189.1| putative transcriptional regulator DicA [Escherichia coli IHE3034]
          Length = 125

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I ++ +    + + LAR+ G+   +  +            P   S+ K++  T   +  
Sbjct: 3   RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKAT-----PKASSLDKLVEVTGHPLHW 57

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
            L  P    +       +I         +   F   
Sbjct: 58  FLLPPEEGEQIFTPDTMKIGPRQRELLQAFSAFPEE 93


>gi|91217921|ref|ZP_01254874.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC
           700755]
 gi|91183898|gb|EAS70288.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC
           700755]
          Length = 247

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/218 (8%), Positives = 55/218 (25%), Gaps = 16/218 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I ++     L+    A    L   +    +    E     P  ++I K+    + +I
Sbjct: 5   GKNIKKIRAIKGLSQQAFAELFSLKRATLGAYEEGRSE-----PKIDTIIKVANYFSISI 59

Query: 70  CQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                     +            +     +                       +  S   
Sbjct: 60  DDFLTKEVTVNQLLRFNGGITTDINQIVKASLKEIPFVNSLNVKLFIENFKTSQSYSALP 119

Query: 129 GI-YAIQTQ-DTRHKTQDT----SMLPLYRKGDILI--LNSAIQVNCGDRLLIKPRTGDI 180
            I   ++   D            S        D++I     +  +  GD +++     ++
Sbjct: 120 TIRVPVEGNLDFLAFMVTDLFMVSDEEALFPNDVVIGESRDSNALIQGDVVVVLVN-HEL 178

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           + +       +   L++ +   P   +      +  ++
Sbjct: 179 LIRRYT-ISDKGYKLLTDHTHIPSIDISFDAAIYFWKV 215


>gi|78067809|ref|YP_370578.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77968554|gb|ABB09934.1| transcriptional regulator, XRE family with cupin sensor
           [Burkholderia sp. 383]
          Length = 183

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + RT   +  E+P L            S           +  P+  +  
Sbjct: 59  SLAEFFTFELVESRTVVSRRDEMPNLGNDTLAFHLVGASMKDRNMCILREIYQPQADTGP 118

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +     +           L +   G   +L+       GD    + R          +
Sbjct: 119 EMLVHAGHEGGGV-VSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                I +++S N 
Sbjct: 166 PSADLICEVVSANS 179


>gi|329118649|ref|ZP_08247353.1| hypothetical protein HMPREF9123_0781 [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465384|gb|EGF11665.1| hypothetical protein HMPREF9123_0781 [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 139

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +   R   + +   +         D ++ P       L+++ +        +       
Sbjct: 31  PLLFSRELMSELGIDKNHCGIFSVHDEAIKPTLDGRCELLVDFSDNKLTDGGIYALQIGS 90

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWASQ 223
             + + +     R I L   N  YP   VE  D   ++ I R+ +  Q
Sbjct: 91  RSLVRRVKLLL-RQIILACDNPEYPDMVVEGEDLNRLKVIGRVRYIGQ 137


>gi|219848414|ref|YP_002462847.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM
           9485]
 gi|219542673|gb|ACL24411.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM
           9485]
          Length = 211

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 24/174 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT   H  + + +  + ER  ++   LA  +GL   + +  +          PS  ++ +
Sbjct: 14  MTKRGHVDVGKRLRTLRERQRMSIRALAEASGLAVNTLSLIENGRT-----SPSVSTLQR 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG- 119
           +  A    I           R       +     FP               G    T+  
Sbjct: 69  LAVALQVPISAFFTPEVPQQRIVYTPAGQAIASIFPHGTL------ADLAPGFINRTLEP 122

Query: 120 ----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
               +               Q+         +          + +    +N GD
Sbjct: 123 LLLTLNPGAGSGPEAIIHTGQEFVFGVNGQIL--------YTVADQTYTINPGD 168


>gi|293394088|ref|ZP_06638391.1| transcriptional activator-regulatory protein [Serratia odorifera
           DSM 4582]
 gi|291423450|gb|EFE96676.1| transcriptional activator-regulatory protein [Serratia odorifera
           DSM 4582]
          Length = 272

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 49/198 (24%), Gaps = 30/198 (15%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + +  E    T + LA++ G+  +   K       G +       + K L    E + 
Sbjct: 27  SRLKKAMEEGGFTQAALAKETGMAQSMIWKLVSGNANGTS---KLVILSKALGVRPEWLG 83

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           +         +    +    P+            ++           + VP         
Sbjct: 84  EGSGPMREGDKNEHHRIGSGPIFGVEIYDGDIRTNT----------WITVPG-------- 125

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS--- 187
            A       +   + +       G  ++++SA +    D +              +    
Sbjct: 126 LAKSDSCKAYHMTEDTGCSEVPAGTYIVVDSAEEAGNNDLVY-ATTGKKSSVYRFVRGGV 184

Query: 188 -----RRGRSIDLMSLNC 200
                     + L+  N 
Sbjct: 185 EDFLSVDDSRVPLIPANS 202


>gi|157737880|ref|YP_001490564.1| hypothetical protein Abu_1647 [Arcobacter butzleri RM4018]
 gi|157699734|gb|ABV67894.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 215

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/196 (10%), Positives = 58/196 (29%), Gaps = 16/196 (8%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
             +A+   ++   F K+K++      R P  E +  +            +          
Sbjct: 27  KDIAQSLNINYDVFRKNKQYN-----RVPYLEIMQFLAKRNISINWFFFNQLPESLIENT 81

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT--RHKT 142
                +         +GG   +        +     P +       Y   +       + 
Sbjct: 82  SNYIILKYQKNIIGSAGGGAIN--------YEINPEPLVIDKQLLDYINSSYKYTEVLEV 133

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              SM P  + G ++ ++ + +      + +      +  K +       + L S N  +
Sbjct: 134 FGESMEPDIKDGSLIFIDKSKKDIDDKNIFLINTKDGLYVKSIN-VNNDKVILKSNNHTF 192

Query: 203 PVDTVEMSDIEWIARI 218
               +++ +++ I ++
Sbjct: 193 NDIYLDIDEVDVIGKV 208


>gi|118602364|ref|YP_903579.1| putative prophage repressor [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567303|gb|ABL02108.1| putative prophage repressor [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 131

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
           ++    +     M P + +  I+I++ +IQ++     +++    ++  +  I R      
Sbjct: 19  SEPFALQNLGNYMTPEFSENCIVIIDPSIQIHNRAYAVVRFD-DELYFRQYIERGSNKF- 76

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L+ LN  +    +   + E I  ++
Sbjct: 77  LICLNTQHDDIEL-KGEFEIIGCVV 100


>gi|260893514|ref|YP_003239611.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260865655|gb|ACX52761.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 256

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
               +   +  + E + LT + LA  AG+      + ++  ++     PS +++ KI  A
Sbjct: 135 QQGTLGARLRALREEYGLTQAQLAAMAGVTAGLIGQIEQGKVQ-----PSLKTLEKIAQA 189

Query: 65  TNETICQL 72
              + C  
Sbjct: 190 MGVSPCYF 197



 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            + E I  +      +   LA +AG+  +  ++ +R  +     +PS  ++ ++     
Sbjct: 73  NVGERIRLLRTEKGWSLQELACRAGISASYLSEIERGTV-----YPSLSTLKRLAEELG 126



 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E I  + E   ++   LARKA +  +  ++ +R       + PS  +I K+  A N +
Sbjct: 5  GERIRALREEKGMSLHDLARKAQISLSYLSEIERGT-----KRPSLRTIEKLAQALNVS 58


>gi|238024352|ref|YP_002908584.1| XRE family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879017|gb|ACR31349.1| Transcriptional regulator, XRE family with Cupin sensor domain
           [Burkholderia glumae BGR1]
          Length = 204

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 10/127 (7%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---------- 51
           T   H  +   +  +     L+ + LA +AG+   + ++ +R       R          
Sbjct: 12  TELRHSDVGGRLRALRVEQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALS 71

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            P +  +    AA++  +   +            K+     L  PP          + P 
Sbjct: 72  VPLSALLEDEGAASDPVVGDFVRKADERPLFDVGKQGMQKELLSPPGDHDLKMMIILLPA 131

Query: 112 GNKWNTV 118
           G   + V
Sbjct: 132 GAGSDEV 138


>gi|307544496|ref|YP_003896975.1| XRE family transcriptional regulator [Halomonas elongata DSM
          2581]
 gi|307216520|emb|CBV41790.1| transcriptional regulator, XRE family [Halomonas elongata DSM
          2581]
          Length = 195

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +   +  +     ++   LA++ G+  +S +  ++  +      PS  S+ KIL A  
Sbjct: 15 DDVGARLRALRNLRGISQRELAKRCGVTHSSLSLIEQGKV-----SPSVSSLKKILDAIP 69

Query: 67 ETICQLLDLP 76
           ++     + 
Sbjct: 70 MSVGDFFTMD 79


>gi|298372166|ref|ZP_06982156.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275070|gb|EFI16621.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 219

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 29/216 (13%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  + ++  L+   LA   G+   +    +  G+   ++      + KIL          
Sbjct: 6   IKDLRKKKGLSQEKLAEMLGVHHRTVQNWEHGGVVPTSKH---ALLRKILEE-------- 54

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
             +  +    +    K+IPL      G      +   P       +   +          
Sbjct: 55  -AMSENKTPVSSAGRKKIPLYDTYSVGGTNGLVATNEPISAPLEWIDAGDWFVDATAAMH 113

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGR 191
                         +           ++    +  G   +I+     I  K L   +  +
Sbjct: 114 HYGDSMAEYPSGCILALR-------EVHDKRLIIWGKNYVIETDEYRIT-KRLQRSKDPK 165

Query: 192 SIDLMSLNCC--------YPVDTVEMSDIEWIARIL 219
            I   S N          +    +  S I  +A +L
Sbjct: 166 CITAYSTNEETYQDGTLIHQPIDIPKSAIRRLALVL 201


>gi|308270544|emb|CBX27156.1| Protein impA [uncultured Desulfobacterium sp.]
          Length = 152

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               +  +          K +D SM+      GD+L+++ +++     +++I    G ++
Sbjct: 50  SLDLNEHLIKHPAATFFVKIKDDSMIKAGIFHGDLLMVDRSLKPCD-KKVVIALHEGGML 108

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIA 216
            +     +   I LMS +  Y    V    +IE + 
Sbjct: 109 VRRFRKIK-GKIYLMSESPEYRHVEVSEDMNIEILG 143


>gi|163939188|ref|YP_001644072.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
           KBAB4]
 gi|229010668|ref|ZP_04167868.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM
           2048]
 gi|229132174|ref|ZP_04261032.1| HTH-type transcriptional regulator sinR [Bacillus cereus
           BDRD-ST196]
 gi|163861385|gb|ABY42444.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis
           KBAB4]
 gi|228651321|gb|EEL07298.1| HTH-type transcriptional regulator sinR [Bacillus cereus
           BDRD-ST196]
 gi|228750633|gb|EEM00459.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM
           2048]
          Length = 107

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2   IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL    +     + +  ++         S   F  
Sbjct: 58  VDTLLHDETTTEGHLDSEWTQLVKDAMSSGVSKEQFRE 95


>gi|308071596|ref|YP_003873201.1| transcriptional regulator sinR [Paenibacillus polymyxa E681]
 gi|305860875|gb|ADM72663.1| HTH-type transcriptional regulator sinR [Paenibacillus polymyxa
          E681]
          Length = 114

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT      + E I  + +   LT   LA  +GLD       +R       R  S +++ K
Sbjct: 1  MTKL-RDSVGERIRTIRKAKGLTQQQLAELSGLDDAYIGSVERGE-----RNFSIDTLEK 54

Query: 61 ILAATNETICQLLDLPFSDGRTT 83
          +L A N +I +L+       +  
Sbjct: 55 VLTALNVSISELMFSKEHMTKDE 77


>gi|332291093|ref|YP_004429702.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169179|gb|AEE18434.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 251

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 57/223 (25%), Gaps = 17/223 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I ++     L+    A    L   +    +    E     P  ++I KI    +  I
Sbjct: 5   GKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSE-----PKIDTIIKIANYFSIPI 59

Query: 70  CQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--WNTVGVPEIRS 125
             LL    +       +        +    + +     +           +         
Sbjct: 60  DDLLTKELTVNSLLKFKANLTTDHDIITKQAFASIPCITSKNAKEYLLYNDKEAFVSDMQ 119

Query: 126 PHNGIYAIQTQDTRHKTQD---TSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTG 178
                   + +       +   +S        DI+I     +          L++     
Sbjct: 120 VLQLPINPEKEFRAFTVDNLEMSSNDKGLFPKDIVIGEMIPKDVYKKLNNGHLVLAVFED 179

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
            +V +        +I L + +         + +++ + RI + 
Sbjct: 180 QLVLRRCY-LSENTITLRADHKNIDDLEFPIQEVKELWRIRYV 221


>gi|330891562|gb|EGH24223.1| LexA repressor [Pseudomonas syringae pv. mori str. 301020]
          Length = 65

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 160 NSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           +   Q + G  ++ +   G++  K L     + + L+  N  Y    V    
Sbjct: 1   HRNPQASDGQIVVARLD-GEVTIKRLHRSADQ-VRLLPRNPAYEPIIVTPDQ 50


>gi|310815924|ref|YP_003963888.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare
          Y25]
 gi|308754659|gb|ADO42588.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare
          Y25]
          Length = 183

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +     L+   LA++ G+  ++ +  +          PS  S+ +IL     
Sbjct: 5  DIGGRLRALRMARGLSQRVLAKRVGVPNSTISLIESGRAN-----PSVGSLKRILDGLPI 59

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         R   
Sbjct: 60 GMAEFFAFDPEAQRQVF 76


>gi|118445169|ref|YP_879281.1| MerR family transcriptional regulator [Clostridium novyi NT]
 gi|118135625|gb|ABK62669.1| Transcriptional regulator, MerR family [Clostridium novyi NT]
          Length = 147

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E I +  +   LT S LA K  L   +  + ++       R P+ + + KI  A   
Sbjct: 2  NVGENIRKYRKEKGLTQSELAEKTHLATNTIQRYEKGH-----RQPTMQVLEKIADALGI 56

Query: 68 TICQLLDLPF 77
           + +L     
Sbjct: 57 PVYRLTFNDE 66


>gi|77999999|ref|YP_358780.1| CI-like repressor [Lactobacillus phage Lc-Nu]
 gi|37826025|gb|AAR04646.1| CI-like repressor [Lactobacillus phage Lc-Nu]
          Length = 141

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 6/125 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++ +I + ++ +  R  ++ S LAR+  +  +S ++          R      + K  
Sbjct: 1   MKTNDEIIKTLNDLRNREGISISELARRVDMAKSSVSRYFNGT-----REFPLNYVDKFA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           +A   T  + L           KK       Y P   S G   +    T +   T+ +P+
Sbjct: 56  SAL-HTTPESLIGVSPVDSFKVKKLNVHSYPYIPTEISAGILCNVDPLTSDDVETIQLPD 114

Query: 123 IRSPH 127
                
Sbjct: 115 SVMGR 119


>gi|307308188|ref|ZP_07587901.1| DNA-binding protein RdgA [Shewanella baltica BA175]
 gi|306909999|gb|EFN40449.1| DNA-binding protein RdgA [Shewanella baltica BA175]
          Length = 82

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           M P+ + G IL +N          L +     ++  K+L S     I L S N  Y  +T
Sbjct: 1   MEPVLKSGSILAVNPCQTRIDDGGLYVVKLGSELRVKIL-SLSNEGITLKSFNKQYLDET 59

Query: 207 VEMSDIE--WIARILWAS 222
           V+  D+      ++ W S
Sbjct: 60  VKQGDVRFSVEGKVFWFS 77


>gi|257484392|ref|ZP_05638433.1| ultraviolet light resistance protein RulA, putative [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289627284|ref|ZP_06460238.1| ultraviolet light resistance protein RulA, putative [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289650426|ref|ZP_06481769.1| ultraviolet light resistance protein RulA, putative [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869479|gb|EGH04188.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889099|gb|EGH21760.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv.
           mori str. 301020]
 gi|331013196|gb|EGH93252.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 90

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMS 210
           R GD+L+++ +     GD ++        + + L   RG  + L S +  YP   V +  
Sbjct: 7   RTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDVVILKSEHPDYPPLHVTDHD 64

Query: 211 DIEWIARI 218
           D+  +  +
Sbjct: 65  DLIILGVV 72


>gi|308273674|emb|CBX30276.1| hypothetical protein N47_D30850 [uncultured Desulfobacterium sp.]
          Length = 433

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +   +   +  +  +   + + LA+  G+  ++ ++ +   I     +PS  ++ KI   
Sbjct: 250 TQLDLGTRLKEIRSKRGFSQTELAKLIGVTSSTISQIESNQI-----YPSLPALIKIAET 304

Query: 65  T 65
            
Sbjct: 305 L 305


>gi|329769474|ref|ZP_08260885.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325]
 gi|328838805|gb|EGF88401.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325]
          Length = 130

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++K + + I  + +   +T   LA    +   + +K +R        +P T ++ KI  
Sbjct: 1   MTNKSMGDIISTLRKEKGMTQKDLADMLNITDKAVSKWERNIA-----FPDTATLPKIAE 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
               ++ +L++     G   +       ++      + G  
Sbjct: 56  IFGVSVEELMNAKSIPGNRHKGAPYLFNIILKAIPTAMGIA 96


>gi|50122315|ref|YP_051482.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612841|emb|CAG76291.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 133

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 2/103 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  + +   +T + LA K G+   +    +      R +  S  S+ +I + + E 
Sbjct: 26  LGERITTLRKERGITQAELAEKLGVSQQTVQAWEAGRR--RIKVSSLPSVAQIFSVSLEE 83

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +      P    R    K ++          +     S +   
Sbjct: 84  VFGEAPEPARRKRGPAPKWQQQMEEIDSLPKAKQKMISEMLSA 126


>gi|317049516|ref|YP_004117164.1| XRE family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951133|gb|ADU70608.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 203

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 9/177 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I   ID + +    T +  A + G+   +  K      EG+       +I +I     
Sbjct: 10  DNIINNIDYLIKSRGETKASFANRTGVTRATLYKIL----EGKVSNVQQSTITRIADFFG 65

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +     ++  +      +  +         + +            +    VG    + P
Sbjct: 66  VS----CEIIENCDLKHIEFIESTLSPDGDKNPAAIPVVPQSEFVSHMEKRVGHLVTQYP 121

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
               +   +     + +      ++  GD+LI+            +   + GDI  K
Sbjct: 122 LTWYFGDVSNMIAMRVEKNIGN-MFFSGDVLIIRRHHPPKKKQIAIFYSQVGDIFLK 177


>gi|146297100|ref|YP_001180871.1| XRE family transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410676|gb|ABP67680.1| transcriptional regulator, XRE family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 211

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + E  N++ S LA   G+   +    +        R P+ +++ KI      T+  
Sbjct: 7   RLKELREEKNISRSDLAEILGVSTQTIANYENGH-----REPNFDTLLKIADYFGVTVDY 61

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           L+          +  ++     +   +      D 
Sbjct: 62  LIGRSEYRTVEEQFSKRTKFERFVVENLPYVISDE 96


>gi|310826605|ref|YP_003958962.1| toxin-antitoxin system [Eubacterium limosum KIST612]
 gi|308738339|gb|ADO35999.1| toxin-antitoxin system [Eubacterium limosum KIST612]
          Length = 118

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K++ E + R+ E   L+   +A   G+  +S N+ ++         PS E++ +     +
Sbjct: 2   KELGERLRRLRESVKLSQVKMAELLGVKQSSINRYEQGQS-----APSLETLVRYADYFD 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
            ++  LL    +      +   +I                   P
Sbjct: 57  VSLDYLLARTDNPQGKLYEHRPKIAPGSEEMKQFIEMCFDPQSP 100


>gi|148269420|ref|YP_001243880.1| cupin 2 domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147734964|gb|ABQ46304.1| Cupin 2, conserved barrel domain protein [Thermotoga petrophila
           RKU-1]
          Length = 188

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 20/185 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E + ++     LT   LA +  L  +  ++ +          PS +++ +IL A   
Sbjct: 14  RIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKT-----SPSIDTLERILEALGT 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +         +    +K+E+           S            +       P  ++  
Sbjct: 69  DLKHFFSDVEEERVVFKKEERVPVYDEPEGVKSEILMSGVEDKEIDPILVTLEPGAQTEE 128

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              +  +  +     Q           D+ + +   ++  GD    K        K  + 
Sbjct: 129 ESYH--EGSEFGFVIQGRI--------DLYLDDKRYRLKEGDCFYYKADK-----KHYVK 173

Query: 188 RRGRS 192
             G+ 
Sbjct: 174 NSGKK 178


>gi|90576555|ref|YP_534797.1| putative ultraviolet light resistance B protein RuvA [Pseudomonas
           putida]
 gi|90567908|dbj|BAE92131.1| putative ultraviolet light resistance B protein RulA [Pseudomonas
           putida]
          Length = 142

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 10/110 (9%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +    P        I A        K +  SM       G  LI++  +    G  + + 
Sbjct: 33  DYYEPPISLDELLNIRA--PHIWIVKVEGESMRDAGIFTGTRLIIDRTVTACSGHIV-MA 89

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWA 221
                 V K L         L S N  Y    V   +   +E    + W+
Sbjct: 90  YVDNQPVVKRLAKSAAG-WTLESANPTYKA--VTPDEYSTVEVFGVVTWS 136


>gi|256397796|ref|YP_003119360.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256364022|gb|ACU77519.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM
           44928]
          Length = 223

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 10/142 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +   +   + R+ +R ++T + LA+K G+  ++ ++ +        R P+ E +  + 
Sbjct: 36  DRTLDAVGPRLKRLRQRSDITLTDLAKKTGISASTLSRLEAG-----LRRPTLEQLLPLA 90

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEI----PLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            A   T+ +L+D P +       +         +L       G      V P G   +  
Sbjct: 91  RAHGVTLDELVDAPPTGDPRLHLRPIACGDGSVILPLTRRPGGIQAYKFVLPAGRDDDAP 150

Query: 119 GVPEIRSPHNGIYAIQTQDTRH 140
             P   +  + +Y +       
Sbjct: 151 D-PRTHAGFDWVYVLNGTLRLV 171


>gi|229020917|ref|ZP_04177610.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273]
 gi|229022840|ref|ZP_04179361.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272]
 gi|228738451|gb|EEL88926.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272]
 gi|228740379|gb|EEL90684.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273]
          Length = 107

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2   IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL    +     + +  ++         S   F  
Sbjct: 58  VDTLLHDETTTESHLDSEWTQLVKDAMSSGVSKEQFRE 95


>gi|198283398|ref|YP_002219719.1| XRE family transcriptional regulator [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|198247919|gb|ACH83512.1| transcriptional regulator, XRE family [Acidithiobacillus
          ferrooxidans ATCC 53993]
          Length = 152

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 3  SFSH-KKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
             H   I + I  + +R  LT + L + A GL  ++ ++ +  G   +  W +  ++ K
Sbjct: 1  MLDHMDDIGDRIKEIRKRLGLTQAELGKHAGGLSKSAVHQWENGGT--KPAWDALTALRK 58

Query: 61 ILAATNETICQ 71
           L    + + Q
Sbjct: 59 NLGINPDWVMQ 69


>gi|310644824|ref|YP_003949583.1| transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309249775|gb|ADO59342.1| Transcriptional regulator [Paenibacillus polymyxa SC2]
          Length = 114

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   I  + +    T   LA  AGL  +     +R      +R  S E++ KI+ A  
Sbjct: 5  ESVGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERG-----DRNISLETLEKIILALK 59

Query: 67 ETICQLLDLPFSDGRTTEKKE 87
              +L     +  R     E
Sbjct: 60 VPPFELFQFDETTDRKQIINE 80


>gi|255021528|ref|ZP_05293572.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969056|gb|EET26574.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus
           ATCC 51756]
          Length = 181

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 60/174 (34%), Gaps = 17/174 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++   + ++ E   L+   L   AG+  ++ ++ +   +      PS  ++ KI  A  
Sbjct: 2   EQLGRQLQKLREERQLSLRSLGELAGVSASAISQMEAGKV-----SPSIATLEKICNALG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP---TGNKWNTVGVPEI 123
             I  L D P  D      +  E   +Y   S +     +  F          ++  P  
Sbjct: 57  VHIASLFDEPQGDQGPILLRTNERRRVYSADSHASIEPLARNFAGKKMQPILISLE-PGG 115

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
               +   + + ++       T+    + + D        Q++ GD +   PR 
Sbjct: 116 VCGEHPYTSAEGEEFAMLIAGTA---EFEQQD-----KRYQLSQGDAVYYDPRQ 161


>gi|225019677|ref|ZP_03708869.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum
          DSM 5476]
 gi|224947522|gb|EEG28731.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum
          DSM 5476]
          Length = 261

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E +  + +   L+   LA K G+   + +K +          P  E++  +      
Sbjct: 2  QLNEKLQILRKEAGLSQERLAEKLGVSRQAVSKWESGQST-----PDIENLSALSDLFGV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T+ +L+    +       +   
Sbjct: 57 TLDELIKKESAPQPAQAVRPAY 78


>gi|323938205|gb|EGB34465.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Escherichia coli E1520]
 gi|323942720|gb|EGB38885.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Escherichia coli E482]
          Length = 191

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 40/221 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESI 58
           MT    K    AI+RM E +   T   L    G+  ++   +  R            E +
Sbjct: 1   MTMNLEKGGRGAIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWV 53

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +    T  ++  L     S   +      E+                     G      
Sbjct: 54  IQCALETGTSLNWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDG 99

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                R      +              +        +         +  G  ++     G
Sbjct: 100 FYIFDREFLPSAFKN------LFVITDNNSEFICDKEF------DDIRDGKWVISID--G 145

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +I  + +    G  I +   N  +     ++ DIE I +I+
Sbjct: 146 EITIRDITRLPGGRIFVEGGNRAF---ECKIEDIEIIGKII 183


>gi|153847580|ref|ZP_01993943.1| LexA repressor [Vibrio parahaemolyticus AQ3810]
 gi|149744723|gb|EDM56191.1| LexA repressor [Vibrio parahaemolyticus AQ3810]
          Length = 173

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150
           LL    +   G    G    G         E     +        D   +    SM  + 
Sbjct: 36  LLEDAANDEQGLPLIGQVAAGEPILAQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIG 95

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
              GD+L ++    V  G  + +     D+  K L  + G ++ L + N  +    V++
Sbjct: 96  IMDGDLLAVHKTQDVRDGQVV-VARVDDDVTVKRLERK-GSTVLLHAENEEFAPIQVDL 152


>gi|15838718|ref|NP_299406.1| hypothetical protein XF2127 [Xylella fastidiosa 9a5c]
 gi|9107257|gb|AAF84926.1|AE004027_8 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 339

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 53/231 (22%), Gaps = 18/231 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K++    D  A    LT   +A           +     I       S     + L    
Sbjct: 106 KRLHAQWDERAFSSGLTQKEIAEILDSTQDLATQYLTRKIPLDYETLSL--FSRALNTAP 163

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP---EI 123
           E I                +        +    +                 V +      
Sbjct: 164 EIIRGTSQKQGVMEPQGVMESSTSNENSWADVRTYSQQMGLGTTGPEIAENVDIHTVKFR 223

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG----D 179
           R   N    I            SMLP  + GD ++ + +        + +    G    +
Sbjct: 224 RDSLNKHNLIPNNLVIMHGAGDSMLPYIQSGDSIMFDESDTTPHHKHIYVIITPGAGADE 283

Query: 180 IVAKVLISRR--GRSIDLMSLNCC-YPVDTVEM--SD----IEWIARILWA 221
              K  I      + +   + N        +     D    I+ I R+ W 
Sbjct: 284 YNVKRCIIDDKHSKRVFFAADNPEGDHDWQLPRWKDDPNYPIKIIGRVRWV 334


>gi|320324808|gb|EFW80880.1| ultraviolet light resistance protein RulA, putative [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329174|gb|EFW85171.1| ultraviolet light resistance protein RulA, putative [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330881546|gb|EGH15695.1| ultraviolet light resistance protein RulA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 90

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMS 210
           R GD+L+++ +     GD ++        + + L   RG  + L S +  YP   V +  
Sbjct: 7   RTGDMLVVDRSQYAEHGDIVVASLNARQ-MCRRLH-MRGDVVILKSEHPDYPPLHVTDHD 64

Query: 211 DIEWIARI 218
           D+  +  +
Sbjct: 65  DLIILGVV 72


>gi|301052920|ref|YP_003791131.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300375089|gb|ADK03993.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 107

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2   IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL    +     + +  ++         S   F  
Sbjct: 58  VDTLLHDETTKENHLDSEWTQLVKDAMSSGVSKEQFRE 95


>gi|325276625|ref|ZP_08142361.1| transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098243|gb|EGB96353.1| transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 26/230 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  +     LTPS  A + G+ P   N   +       R      + ++        
Sbjct: 5   GDRLRALLHECGLTPSDFAAQRGVTPQHVNNWVK-------RGVPLARLDEMADLFCVHR 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-----------V 118
             L         +   +      L+ P           +                    +
Sbjct: 58  RWLHTGEGPKHPSPILRNARPRKLHTPAPSPLLVDHGRLVKVPYYELHDGLLSPVASKPL 117

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +P       G+ A           D++MLPL  +  +L+++ ++              G
Sbjct: 118 RLPAKALQGLGVRA--DDAISVTMPDSNMLPLIPQEAVLVIDVSMTQVFQGETYALLHNG 175

Query: 179 DIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222
            +    L   +  ++ L S     Y V+    +      +E +  +   S
Sbjct: 176 ALRVNTLSLGQHGTLYLHSQDRRNYAVERYTPAQRQAQGLEVLGWVFHWS 225


>gi|146280879|ref|YP_001171032.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145569084|gb|ABP78190.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|327479148|gb|AEA82458.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 182

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 6/138 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+L+    
Sbjct: 2   DVGVRLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSISSLKKVLSGIPM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSP 126
           ++ +     F     T+   K   L+                P     +     P     
Sbjct: 57  SLVEFFSPDFDQDSDTQVVYKGSELIDISDGAVSMKLVGKAHPGRAIAFLDETYPPGSDT 116

Query: 127 HNGIYAIQTQDTRHKTQD 144
              + + Q ++     + 
Sbjct: 117 GMDMLSHQGEEAGMLVEG 134


>gi|92113496|ref|YP_573424.1| SOS mutagenesis protein UmuD [Chromohalobacter salexigens DSM 3043]
 gi|91796586|gb|ABE58725.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24
           [Chromohalobacter salexigens DSM 3043]
          Length = 146

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 41/139 (29%), Gaps = 9/139 (6%)

Query: 87  EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI------RSPHNGIYAIQTQDTRH 140
            ++  + +  P+         +       +    P           +  +          
Sbjct: 1   MRDPEIRHPHPAPPYRALPHPLVTIRAGISGFPSPAEDYVGRTLDLNERLVKRPAATFFM 60

Query: 141 KTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
                SM+    + GD L+++ +I    G  ++     G+++ K      GR   L S N
Sbjct: 61  TVAGDSMVDFGIQDGDTLVVDRSIDAKPGHIVVALVD-GEVIVKRYEII-GRRPYLCSGN 118

Query: 200 CCYPVDTVEMSDIEWIARI 218
             Y    +   + +    +
Sbjct: 119 FQYAPIPLANIECQVWGVV 137


>gi|15676898|ref|NP_274044.1| hypothetical protein NMB1009 [Neisseria meningitidis MC58]
 gi|7226249|gb|AAF41410.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|325206162|gb|ADZ01615.1| conserved domain protein [Neisseria meningitidis M04-240196]
 gi|325208040|gb|ADZ03492.1| conserved domain protein [Neisseria meningitidis NZ-05/33]
          Length = 64

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222
               L     +  +  K +  +   S+ L+S N  YP   + ++   DI+ I +++  S
Sbjct: 2   NNYYLYRNCSSDVLWVKRIQRQIDGSLLLISDNSTYPPMPLALAEHPDIQIIGQVVQVS 60


>gi|327441218|dbj|BAK17583.1| predicted transcriptional regulator [Solibacillus silvestris
           StLB046]
          Length = 180

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 14/166 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  +  +  LT   L  +  L     ++ +R         PS E++F +L     
Sbjct: 2   QIGSKIKALRIKKGLTQEELGERTDLSKGYISQLERDLN-----SPSIETLFNLLEVLGC 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T     D    + +      K+    +                   +   V +   +   
Sbjct: 57  TPRDFFDDTQENEKIVFT--KDDQTCFIDQDKKYEIEWLIPTSNEKEMEPVFITLQKDAE 114

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
              +     +T    Q+  +  +    + +        + GD +  
Sbjct: 115 FKAFEPSLAETFIYVQNGRIRVVLGNDEYI-------ASEGDAVYY 153


>gi|326382822|ref|ZP_08204512.1| transcriptional regulator, XRE family protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198412|gb|EGD55596.1| transcriptional regulator, XRE family protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 186

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 22/186 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  +     L+ S LAR+A +   + ++ +        R P+ E+++ + A  +  
Sbjct: 6   IGDRLRELRAARGLSLSELARRADIGKATLSEIESG-----RRNPNIETLYALCAPLDVP 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  +L        T       + L                FP G        P   +   
Sbjct: 61  LTGMLGETPGTHGTAAGGMVTVLLSTRHLPAETVEVFRLEFPAGA---HHVSPAHGAGVR 117

Query: 129 GIYAIQTQDTRHKTQDTSMLPLY----------RKGDILILNSAIQVNCGDRLLIKPRTG 178
              A+           T+  P               D +             ++  P   
Sbjct: 118 EQLAVVAGTLTV---GTADAPTIVHRGDCHAWTSDTDHVFSAPDGPAEAI-VVISTPHAH 173

Query: 179 DIVAKV 184
           +   K 
Sbjct: 174 ENRTKQ 179


>gi|238062141|ref|ZP_04606850.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
 gi|237883952|gb|EEP72780.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
          Length = 189

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + E   ++ S LAR AG+   + +  +        R P+ E+++ + A     
Sbjct: 22  VGARVRALREERGMSLSTLARLAGVGKATLSGLENGT-----RNPTLETLYAVTAQLGVP 76

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L  P +             L  F  + +           G    +       + H 
Sbjct: 77  LTAALSGPAATPTVRGTAVSATLLEVFTEAEATFELYRMRVAPGVGQLSPAHQPGVTEHV 136

Query: 129 GIYA 132
            ++A
Sbjct: 137 TVFA 140


>gi|187919377|ref|YP_001888408.1| XRE family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717815|gb|ACD19038.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
           PsJN]
          Length = 183

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 62/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  + +++ L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVATRLQYIRKKNGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +         R+   +  ++P L            S           V  P +    
Sbjct: 59  SLAEFFTFEVEVERSVVSRRADMPNLGNESIEFYLAGSSVKDRNMGILREVYQP-LSDTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +   +  +          L +   G   +L+       GD    + R          +
Sbjct: 118 PEMLEHEGHEGGVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                + +++S N 
Sbjct: 166 PSADHLCEIVSANS 179


>gi|295094003|emb|CBK83094.1| nucleotide sugar dehydrogenase [Coprococcus sp. ART55/1]
          Length = 493

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S  ++ + +    +   +T + LA   G++    ++ ++     ++  PS E +  
Sbjct: 1  MKKLSQSRLADTVMNGRKEKGMTQAQLADATGINRALISRIEQ-----KDFVPSIEQLES 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86
          +    N  + ++     +    +   
Sbjct: 56 LSEVLNFDLTEMFINAGAHKLESPSP 81


>gi|115353089|ref|YP_774928.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|170702522|ref|ZP_02893400.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           IOP40-10]
 gi|172061941|ref|YP_001809593.1| XRE family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115283077|gb|ABI88594.1| transcriptional regulator, XRE family with cupin sensor
           [Burkholderia ambifaria AMMD]
 gi|170132560|gb|EDT01010.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           IOP40-10]
 gi|171994458|gb|ACB65377.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MC40-6]
          Length = 183

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + R+   +  E+P L                        +  P +    
Sbjct: 59  SLAEFFTFELVESRSVVSRRDEMPNLGNDTLAFHLVGAGVKDRNMCIMREIYQP-LADTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +      +          L +       +L+       GD    + R          +
Sbjct: 118 PEMLVHAGHEGGVVVSGRLELTV--DSATWLLDP------GDGYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                + +++S N 
Sbjct: 166 PSAEQLCEVVSANS 179


>gi|229166214|ref|ZP_04293974.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621]
 gi|228617312|gb|EEK74377.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621]
          Length = 107

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2   IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL    +     + +  ++         S   F  
Sbjct: 58  VDTLLHDETTTESHLDSEWTQLVKDAMSSGVSKEQFRE 95


>gi|209515409|ref|ZP_03264275.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209504129|gb|EEA04119.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 204

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 14/125 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  +   +  +   H L+ + LA +AG+   + ++ +R       R    E + + L   
Sbjct: 16  HGDVGTRLRALRIAHGLSVNELAMRAGVSVGTVSQVERNKANPSVRI--LERLRQALEVP 73

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLY------------FPPSGSGGFFDSGVFPTGN 113
              + +  D           ++     L+             P           + P G+
Sbjct: 74  LTALLEEDDAVSDPVTGDFVRKAAERPLFEVGKNGMQKELLSPHGDHDLQMMIIMLPAGS 133

Query: 114 KWNTV 118
               V
Sbjct: 134 GSEEV 138


>gi|283785313|ref|YP_003365178.1| transcriptional regulator [Citrobacter rodentium ICC168]
 gi|282948767|emb|CBG88362.1| putative transcriptional regulator [Citrobacter rodentium ICC168]
          Length = 178

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA   G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLKTLRSQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P S    T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSTFIAPPESTRLPTFDPQQQAMVVTPLFPWDPELCFDHFSILLAPGALSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHEAGVIEH 124


>gi|302869679|ref|YP_003838316.1| nickel-type superoxide dismutase maturation protease
           [Micromonospora aurantiaca ATCC 27029]
 gi|315503839|ref|YP_004082726.1| nickel-type superoxide dismutase maturation protease
           [Micromonospora sp. L5]
 gi|302572538|gb|ADL48740.1| nickel-type superoxide dismutase maturation protease
           [Micromonospora aurantiaca ATCC 27029]
 gi|315410458|gb|ADU08575.1| nickel-type superoxide dismutase maturation protease
           [Micromonospora sp. L5]
          Length = 112

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL--LIKPRTGDI 180
            +P     A++           SM P  R GD +++      V  GD +  + + R   +
Sbjct: 1   MAPTGEPPALRGPLVPVLVTGPSMAPTLRHGDAVLVRTKGRPVRPGDVVVAVFRSRPDLL 60

Query: 181 VAKVLISRRGRSIDLMSLNC--CYPVDTVEMSDIEWIARIL--WA 221
           V K  +  R     L   N           ++D+    R++  W 
Sbjct: 61  VVKRAVEPRDGGWWLRGDNEFVADDSRAYGVADVR--GRVVARWW 103


>gi|307822273|ref|ZP_07652505.1| Peptidase S24/S26A/S26B, conserved region [Methylobacter
           tundripaludum SV96]
 gi|307736839|gb|EFO07684.1| Peptidase S24/S26A/S26B, conserved region [Methylobacter
           tundripaludum SV96]
          Length = 81

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD 205
               DIL+++ +I+   G  L+     G++  K L     +   L + N  Y   
Sbjct: 6   IHPNDILVVDRSIEPLPGKILICALN-GELTVKRLDRYNDQ-WQLKAENPNYAEL 58


>gi|308071595|ref|YP_003873200.1| transcriptional regulator yazB [Paenibacillus polymyxa E681]
 gi|305860874|gb|ADM72662.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus
          polymyxa E681]
          Length = 114

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +    T   LA  AGL  +     +R      +R  S E++ KI+ A N  
Sbjct: 7  VGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERG-----DRNISLETLEKIILALNVP 61

Query: 69 ICQLLDLPFSDGRTTEKKE 87
            +L     +  R     E
Sbjct: 62 AFELFQFDENTDRKQIINE 80


>gi|270294200|ref|ZP_06200402.1| transcriptional regulator [Bacteroides sp. D20]
 gi|270275667|gb|EFA21527.1| transcriptional regulator [Bacteroides sp. D20]
          Length = 269

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 23/228 (10%)

Query: 3   SFSHKKIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               + I E I ++  ++     +  A   G +  +    +          P  + + KI
Sbjct: 1   MQKDETIHERITQLVNKYGNGKNTVFASLIGSNEANVRGYRTST------MPKFDFLEKI 54

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG----NKWNT 117
               +  +  LL    S     +  +    L                   G    +  + 
Sbjct: 55  ARNIDINLDWLLTGRGSM--EKQPPKSSFALSQINNDFVSIPLVDISVAAGCCGYDNPDY 112

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-----SAIQVNCGDRLL 172
           + V +     + +     +    + +  SM P       +I+          +      +
Sbjct: 113 LEVVDTIKMPSSMVRNSEKYFCVRIKGESMSPTLLDSSYVIVRLLDRSEWQDMPDQHIYV 172

Query: 173 IKPRTGDIVAKVL--ISRRGRSIDLMSLNCC---YPVDTVEMSDIEWI 215
           I    G    K +    R+   +  MS N     YP   +E  +I  I
Sbjct: 173 ISDTDGRSYIKRIKNRFRQHGFLVCMSDNVDKINYPNFNLEAQEINTI 220


>gi|260172733|ref|ZP_05759145.1| hypothetical protein BacD2_12771 [Bacteroides sp. D2]
 gi|315921023|ref|ZP_07917263.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694898|gb|EFS31733.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 20/209 (9%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA   G+   + +         RN       + K     +     L            
Sbjct: 24  SELAEYLGVSRATVSNW-----GARNSIDFRLLLDKFGDKVDYNWLLLGKGNPKHQSRYC 78

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT------ 138
           + E     +    +            T          +    +   YA+           
Sbjct: 79  ESELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANLKTLFTNKKQYALGKILIPNISVC 138

Query: 139 --RHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRL---LIKPRTGDIVAKVLIS-RR 189
                    SM P+ + GDI+    ++S   V  G+      +      +  K +    +
Sbjct: 139 DGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSFMIDGDEYLAVKYVNRSDK 198

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              + L+S N  +    +  + I  +A +
Sbjct: 199 EGYLKLVSYNTHHEPMDIPFAVINAMAIV 227


>gi|329940155|ref|ZP_08289437.1| UDP-N-acetylglucosamine transferase [Streptomyces
          griseoaurantiacus M045]
 gi|329300981|gb|EGG44877.1| UDP-N-acetylglucosamine transferase [Streptomyces
          griseoaurantiacus M045]
          Length = 509

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T S LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|302541927|ref|ZP_07294269.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302459545|gb|EFL22638.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces himastatinicus ATCC 53653]
          Length = 509

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T S LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|217958856|ref|YP_002337404.1| transcriptional regulator SinR [Bacillus cereus AH187]
 gi|222095015|ref|YP_002529075.1| transcriptional regulator sinr [Bacillus cereus Q1]
 gi|229138068|ref|ZP_04266666.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26]
 gi|229172021|ref|ZP_04299586.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3]
 gi|217067870|gb|ACJ82120.1| transcriptional regulator SinR [Bacillus cereus AH187]
 gi|221239073|gb|ACM11783.1| transcriptional regulator SinR [Bacillus cereus Q1]
 gi|228611364|gb|EEK68621.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3]
 gi|228645413|gb|EEL01647.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26]
 gi|324325398|gb|ADY20658.1| transcriptional regulator SinR [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 107

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2   IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL    +     + +  ++         S   F  
Sbjct: 58  VDTLLHDETTKENHLDSEWTQLVKDAMSSGVSKEQFRE 95


>gi|325919915|ref|ZP_08181904.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325549624|gb|EGD20489.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 461

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
              H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 6  PPLRH-QLGLRLQRLRQRHGLTQAELARRLALSPSYLNQIERNQRP 50


>gi|228899959|ref|ZP_04064198.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          IBL 4222]
 gi|228964335|ref|ZP_04125453.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228795344|gb|EEM42833.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228859670|gb|EEN04091.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          IBL 4222]
          Length = 107

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57


>gi|218235129|ref|YP_002366064.1| transcriptional regulator SinR [Bacillus cereus B4264]
 gi|228938496|ref|ZP_04101105.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228971375|ref|ZP_04132001.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228977987|ref|ZP_04138367.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          Bt407]
 gi|229108836|ref|ZP_04238441.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock1-15]
 gi|229149581|ref|ZP_04277813.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550]
 gi|218163086|gb|ACK63078.1| transcriptional regulator SinR [Bacillus cereus B4264]
 gi|228633927|gb|EEK90524.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550]
 gi|228674605|gb|EEL29844.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock1-15]
 gi|228781775|gb|EEM29973.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          Bt407]
 gi|228788242|gb|EEM36195.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228821233|gb|EEM67249.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326939004|gb|AEA14900.1| SinR protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 107

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57


>gi|148381499|ref|YP_001256040.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933346|ref|YP_001385874.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936871|ref|YP_001389281.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148290983|emb|CAL85119.1| putative transcriptional regulator [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929390|gb|ABS34890.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932785|gb|ABS38284.1| DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 220

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 14/217 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65
           ++ + I     +  LT   LA+K G+     N+ +           +  S  + K +   
Sbjct: 3   RVSDKIKEARLKKGLTQKQLAKKLGVAENFINEIESGRKIINESLMNRISKVLGKGINDI 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  + + L      +  K  K   +     S          +      +   +P + +
Sbjct: 63  GISFEEEVSLEPKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVVGN 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
              GI+  Q +    K ++  M      KGDI       ++       +         + 
Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNNKRSVRQ 179

Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217
           L    G  I L    +SL      + V + DI+ IAR
Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212


>gi|9858108|gb|AAG00996.1|AF287346_1 regulator SinR [Bacillus thuringiensis]
          Length = 107

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57


>gi|323963980|gb|EGB59472.1| helix-turn-helix protein [Escherichia coli M863]
 gi|327254078|gb|EGE65707.1| helix-turn-helix family protein [Escherichia coli STEC_7v]
          Length = 178

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCEEGARFAADVTHVYRNGG 163


>gi|229029051|ref|ZP_04185150.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271]
 gi|228732331|gb|EEL83214.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271]
          Length = 107

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2   IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL    +     + +  ++         S   F  
Sbjct: 58  VDTLLHDETTKENHLDSEWTQLVKDAMSSGVSKEQFRE 95


>gi|171320839|ref|ZP_02909842.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MEX-5]
 gi|171093917|gb|EDT39035.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MEX-5]
          Length = 183

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + R+   +  E+P L                        +  P +    
Sbjct: 59  SLAEFFTFELVESRSIVSRRDEMPNLGNDTLAFHLVGAGVKDRNMCIMREIYQP-LADTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +      +          L +       +L+       GD    + R          +
Sbjct: 118 PEMLVHAGHEGGVVVSGRLELTV--DSATWLLDP------GDGYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                + +++S N 
Sbjct: 166 PSAEQLCEVVSANS 179


>gi|227539936|ref|ZP_03969985.1| phage repressor [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240214|gb|EEI90229.1| phage repressor [Sphingobacterium spiritivorum ATCC 33300]
          Length = 230

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 18/219 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    +        +A K G+ P + N           +    + I K +  +   
Sbjct: 2   IGNDLKIRLKNLGYELKEIAEKMGISPQALN---SKFASDDLKVSFLQQIAKSINKSVYF 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +      +   T E+       L+                  +        + RS   
Sbjct: 59  LMEEPGPITNVIETKEEGVSRSEFLFRTDKLMHNQIIPLYDVHASASLITLFQQDRSTVV 118

Query: 129 GIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRL---LIKPRTG 178
             ++I      D        SM P+ + GDI+           +  G+     +      
Sbjct: 119 DYFSIPNMPKVDGAMAITGDSMYPILKSGDIIFFRKINNFMENLFFGEMYLLDISNDDDD 178

Query: 179 DIVAKVLIS--RRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
               K + +  R    I ++S N  +    + +S   WI
Sbjct: 179 YTTVKYVQTSDRGPDWIKIVSQNQHHSSKDIHLS---WI 214


>gi|169826912|ref|YP_001697070.1| hypothetical protein Bsph_1332 [Lysinibacillus sphaericus C3-41]
 gi|168991400|gb|ACA38940.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 180

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 8/138 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  +  +  LT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2   QIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLN-----SPSIETLFSILEVLGS 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T  +  D    + +    +  E   ++                   +   + +    +  
Sbjct: 57  TPKEFFDDESPEQKVVYTE--EDQSIFTDEEKKYEIQWLIPTSNEKEMEPIFLTFEANGE 114

Query: 128 NGIYAIQ-TQDTRHKTQD 144
              +    ++   +  + 
Sbjct: 115 FKQFEPSLSETFIYVVKG 132


>gi|331672348|ref|ZP_08373139.1| repressor protein [Escherichia coli TA280]
 gi|331070543|gb|EGI41907.1| repressor protein [Escherichia coli TA280]
          Length = 191

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 40/221 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESI 58
           MT    K    AI+RM E +   T   L    G+  ++   +  R            E +
Sbjct: 1   MTMNLEKGGRGAIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWV 53

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +    T  ++  L     S   +      E+                     G      
Sbjct: 54  IQCALETGTSLNWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDG 99

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
                R      +              +        +         +  G  ++     G
Sbjct: 100 FYIFDREFLPSAFKN------LFVITDNNFEFICDKEF------DDIRDGKWVISID--G 145

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +I  + +    G  I +   N  +     ++ DIE I +I+
Sbjct: 146 EITIRDITRLPGGRIFVEGGNRAF---ECKIEDIEIIGKII 183


>gi|307325149|ref|ZP_07604353.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889295|gb|EFN20277.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 509

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T S LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|241896321|ref|ZP_04783617.1| repressor lexA [Weissella paramesenteroides ATCC 33313]
 gi|241870301|gb|EER74052.1| repressor lexA [Weissella paramesenteroides ATCC 33313]
          Length = 191

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           +    P        +++        +    +ML +     D LI+     V  GD +++K
Sbjct: 83  DETKEPVTNITIQNLFSFDDDTFILQQHSNTMLNIGILNNDYLIVKKQKSVVNGDIIVVK 142

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                 V +    + G    L   N       +E      + R++
Sbjct: 143 INEMTNVYRYF--KEGTHCRLQPENSNLKPVIIENP--TILGRVV 183


>gi|262376873|ref|ZP_06070100.1| RumA [Acinetobacter lwoffii SH145]
 gi|262308218|gb|EEY89354.1| RumA [Acinetobacter lwoffii SH145]
          Length = 165

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 3/97 (3%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +  +   +      K    SM        D LI++ +I     D ++      D   
Sbjct: 61  LDMNEHLIRNEAATFVVKVASLSMRDAGIEIDDELIVDRSIDAKHEDIVIALID-NDFTV 119

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           K L+        L + N       ++      I  ++
Sbjct: 120 KRLMIENNYR-WLKAENPDCSDIHLQDGQEMVIWGVV 155


>gi|254513121|ref|ZP_05125187.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
 gi|221533120|gb|EEE36115.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
          Length = 193

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 48/150 (32%), Gaps = 9/150 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            + +  +I   + R+ +  +LT + LA +A +     ++ +   +      PS  ++  +
Sbjct: 5   KTETELEIGRTLQRLRQERSLTVTELAARAKVSTPMISRIENGHV-----SPSLGTLQAL 59

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----WNT 117
             A + ++  L     +       +           +G    +      +G         
Sbjct: 60  ADALSVSMMALFSHTANAADVHHVQSGNGLPSRRVTNGHAHDYLLLGKHSGPGGSFQSAR 119

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
           + +P+        Y  +     +  +  ++
Sbjct: 120 IRIPKQNPDSLPSYQHEGYVFIYMIEGDAI 149


>gi|218513526|ref|ZP_03510366.1| probable transcriptional regulator protein, LacI family [Rhizobium
           etli 8C-3]
          Length = 219

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I   I ++     LT   LA  +G+     ++ +R         P+   + +
Sbjct: 1   MEEQLEQAIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I AA   ++               +++ +                +    +      V  
Sbjct: 56  ICAALGLSLSAFFAEEGQQASPLARRQDQQVWRDPETGYLRRSVSAPGTASDVDIVEVEF 115

Query: 121 PEIRSPHNGIYA 132
           P         +A
Sbjct: 116 PAGARVSFPPHA 127


>gi|302554854|ref|ZP_07307196.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          viridochromogenes DSM 40736]
 gi|302472472|gb|EFL35565.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          viridochromogenes DSM 40736]
          Length = 509

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   I    +    T S LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|220926324|ref|YP_002501626.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
 gi|219950931|gb|ACL61323.1| putative phage repressor [Methylobacterium nodulans ORS 2060]
          Length = 245

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 51/219 (23%), Gaps = 26/219 (11%)

Query: 10  WEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            E +          +    A + G   +++   +        R    +   +        
Sbjct: 29  GERLRLARLAAGYRSARDAALRNGWPESTYRAHEAGT-----RTMGQDDAERYAERFRRD 83

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             Q+       G     +                   S                      
Sbjct: 84  GVQVTAKGLLFGDDEAAEPPGDG----AQVVGVRGVISAGGLIATGDEQPDPSGNLFEVT 139

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVL 185
             +A+       +    SM P Y   DI++      + +   G    +    G+   K +
Sbjct: 140 VPFALPPGTIAFRVAGGSMHPKYEPDDIVLCAQAGESPERLVGCYAAVATADGNRFLKKI 199

Query: 186 IS-RRGRSIDLMSLN-CCYPVDTVEMSDIEWIARILWAS 222
           +   R  +  L S N    P             R++WAS
Sbjct: 200 LRGSRRGTYHLESHNAPLMPDR-----------RLVWAS 227


>gi|30019433|ref|NP_831064.1| SinR protein [Bacillus cereus ATCC 14579]
 gi|206967979|ref|ZP_03228935.1| transcriptional regulator SinR [Bacillus cereus AH1134]
 gi|228920093|ref|ZP_04083442.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228951761|ref|ZP_04113860.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|229043120|ref|ZP_04190847.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676]
 gi|229068931|ref|ZP_04202225.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185]
 gi|229078565|ref|ZP_04211123.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2]
 gi|229126696|ref|ZP_04255708.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-Cer4]
 gi|229143985|ref|ZP_04272401.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-ST24]
 gi|229177788|ref|ZP_04305161.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W]
 gi|296501962|ref|YP_003663662.1| SinR protein [Bacillus thuringiensis BMB171]
 gi|29894977|gb|AAP08265.1| SinR protein [Bacillus cereus ATCC 14579]
 gi|206736899|gb|EDZ54046.1| transcriptional regulator SinR [Bacillus cereus AH1134]
 gi|228605579|gb|EEK63027.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W]
 gi|228639382|gb|EEK95796.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-ST24]
 gi|228656636|gb|EEL12462.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-Cer4]
 gi|228704709|gb|EEL57137.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2]
 gi|228714215|gb|EEL66096.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185]
 gi|228726212|gb|EEL77442.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676]
 gi|228807883|gb|EEM54403.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228839549|gb|EEM84841.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|296323014|gb|ADH05942.1| SinR protein [Bacillus thuringiensis BMB171]
          Length = 107

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57


>gi|290243024|ref|YP_003494694.1| helix-turn-helix domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945529|gb|ADC73227.1| helix-turn-helix domain protein [Thioalkalivibrio sp. K90mix]
          Length = 199

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 29/194 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +   K +   I +   +   +   LA+  G+ P S     + G        + E++ +
Sbjct: 1   METEIKKALGVQIQQRLAQVGRSKRWLAQAVGVSPASVTGWVQDG------HITIENLCR 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   +   L+ +  S   T                 + G         G        
Sbjct: 55  VAGALGVSTQWLMGISVSGEHT----------------QAHGQAAVYGSTAGVATE---- 94

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG-DRLLIKPRTGD 179
           P       G  A +      K     + P YR G++L+L+       G D LL    +G+
Sbjct: 95  PTGHLDTGGPIAPE--YWALKVAGVELDPRYRDGEVLLLDRIKPPVPGTDVLLYSKESGE 152

Query: 180 IVAKVLISRRGRSI 193
              + L++    ++
Sbjct: 153 ARVRALVADTSDAV 166


>gi|255008916|ref|ZP_05281042.1| hypothetical protein Bfra3_07237 [Bacteroides fragilis 3_1_12]
 gi|313146657|ref|ZP_07808850.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313135424|gb|EFR52784.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 279

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 26/214 (12%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             + +A   G+  T  ++     ++       T+ I  +    + +   +L       R 
Sbjct: 25  NKAEIAESLGIGATRLSEILNNRMKA-----GTDLIACLCFKYDISSDWILMGKGPMFRD 79

Query: 83  TEKKEKEIPL-------LYFPPSGSGGFFDSGVFPTG-NKWN---TVGVPEIRSPHNGIY 131
            +  E    +       +                  G + ++    + V ++    + + 
Sbjct: 80  NKISEGPKQVHIPDTIPILSNEDFISIPLVEISVAAGCSGYDNPSYLDVIDVIKMPSTML 139

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD----RLLIKPRTGD-IVAKVLI 186
               Q    + +  SM P       +I  +  +   G      + I          K + 
Sbjct: 140 KNNGQYFCIRVKGESMTPTILDSSYIIARTLDRSEWGHMPDRHVYIISDRDGRAYLKRVK 199

Query: 187 SR--RGRSIDLMSLNCC---YPVDTVEMSDIEWI 215
           +R      I  MS N     YP   +E  +I  I
Sbjct: 200 NRLSNSGFIVCMSDNVDKLNYPNFNLEEQEINCI 233


>gi|269929183|ref|YP_003321504.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269788540|gb|ACZ40682.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 367

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 5/115 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S ++I  A+  + ER   T + LA ++G+  +   + ++         PS  ++ ++  
Sbjct: 13  RSRQQIGPALRALRERRGWTLAQLAAESGVSRSQVWRLEQGQNV-----PSYLTLARLAK 67

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           A    I        +           +  +  P      F   G+   G   + +
Sbjct: 68  ALEVEINYFTSFESTATELDRDLSSYLRRVGVPEDTWAEFGRLGLEARGALLDAL 122


>gi|30261384|ref|NP_843761.1| transcriptional regulator SinR [Bacillus anthracis str. Ames]
 gi|47526558|ref|YP_017907.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49184213|ref|YP_027465.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne]
 gi|49479785|ref|YP_035509.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|52144053|ref|YP_082775.1| transcriptional regulator [Bacillus cereus E33L]
 gi|65318649|ref|ZP_00391608.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|165870458|ref|ZP_02215113.1| transcriptional regulator SinR [Bacillus anthracis str. A0488]
 gi|167634445|ref|ZP_02392766.1| transcriptional regulator SinR [Bacillus anthracis str. A0442]
 gi|167639233|ref|ZP_02397505.1| transcriptional regulator SinR [Bacillus anthracis str. A0193]
 gi|170686721|ref|ZP_02877941.1| transcriptional regulator SinR [Bacillus anthracis str. A0465]
 gi|170706389|ref|ZP_02896850.1| transcriptional regulator SinR [Bacillus anthracis str. A0389]
 gi|177651426|ref|ZP_02934215.1| transcriptional regulator SinR [Bacillus anthracis str. A0174]
 gi|190568774|ref|ZP_03021678.1| transcriptional regulator SinR [Bacillus anthracis
          Tsiankovskii-I]
 gi|196040706|ref|ZP_03108005.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99]
 gi|196046437|ref|ZP_03113662.1| transcriptional regulator SinR [Bacillus cereus 03BB108]
 gi|218902488|ref|YP_002450322.1| transcriptional regulator SinR [Bacillus cereus AH820]
 gi|225863243|ref|YP_002748621.1| transcriptional regulator SinR [Bacillus cereus 03BB102]
 gi|227815879|ref|YP_002815888.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684]
 gi|228913951|ref|ZP_04077575.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228926412|ref|ZP_04089484.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228932662|ref|ZP_04095536.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228944980|ref|ZP_04107341.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229090334|ref|ZP_04221578.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-42]
 gi|229120921|ref|ZP_04250163.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201]
 gi|229183574|ref|ZP_04310798.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC
          6E1]
 gi|229600133|ref|YP_002865801.1| transcriptional regulator SinR [Bacillus anthracis str. A0248]
 gi|254682559|ref|ZP_05146420.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254726220|ref|ZP_05188002.1| transcriptional regulator [Bacillus anthracis str. A1055]
 gi|254733977|ref|ZP_05191691.1| transcriptional regulator [Bacillus anthracis str. Western North
          America USA6153]
 gi|254740336|ref|ZP_05198027.1| transcriptional regulator [Bacillus anthracis str. Kruger B]
 gi|254753723|ref|ZP_05205758.1| transcriptional regulator [Bacillus anthracis str. Vollum]
 gi|254758819|ref|ZP_05210846.1| transcriptional regulator [Bacillus anthracis str. Australia 94]
 gi|30255238|gb|AAP25247.1| transcriptional regulator SinR [Bacillus anthracis str. Ames]
 gi|47501706|gb|AAT30382.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49178140|gb|AAT53516.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne]
 gi|49331341|gb|AAT61987.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|51977522|gb|AAU19072.1| transcriptional regulator [Bacillus cereus E33L]
 gi|164713953|gb|EDR19475.1| transcriptional regulator SinR [Bacillus anthracis str. A0488]
 gi|167512672|gb|EDR88046.1| transcriptional regulator SinR [Bacillus anthracis str. A0193]
 gi|167530333|gb|EDR93059.1| transcriptional regulator SinR [Bacillus anthracis str. A0442]
 gi|170128923|gb|EDS97789.1| transcriptional regulator SinR [Bacillus anthracis str. A0389]
 gi|170669244|gb|EDT19987.1| transcriptional regulator SinR [Bacillus anthracis str. A0465]
 gi|172082704|gb|EDT67767.1| transcriptional regulator SinR [Bacillus anthracis str. A0174]
 gi|190560190|gb|EDV14171.1| transcriptional regulator SinR [Bacillus anthracis
          Tsiankovskii-I]
 gi|196022621|gb|EDX61303.1| transcriptional regulator SinR [Bacillus cereus 03BB108]
 gi|196028496|gb|EDX67104.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99]
 gi|218539564|gb|ACK91962.1| transcriptional regulator SinR [Bacillus cereus AH820]
 gi|225790845|gb|ACO31062.1| transcriptional regulator SinR [Bacillus cereus 03BB102]
 gi|227003466|gb|ACP13209.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684]
 gi|228599984|gb|EEK57580.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC
          6E1]
 gi|228662581|gb|EEL18179.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201]
 gi|228693028|gb|EEL46745.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-42]
 gi|228814649|gb|EEM60909.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228826980|gb|EEM72740.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228833236|gb|EEM78801.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228845673|gb|EEM90700.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|229264541|gb|ACQ46178.1| transcriptional regulator SinR [Bacillus anthracis str. A0248]
          Length = 107

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
          +  LL    +     + +  +
Sbjct: 58 VDTLLHDETTKEANLDSEWTQ 78


>gi|254884591|ref|ZP_05257301.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837384|gb|EET17693.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 224

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 17/220 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + ++ +   +T   +A   G++ T+  +      +   R  S   +  I  + N ++
Sbjct: 1   MTTLRQIIKNQGVTNKVVADALGIESTNIGRY----DDLSKRKLS--ELITISKSLNMSL 54

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNTVGVPEIRSPH 127
            +L+    SD    E+        Y       G  +          K   V   +     
Sbjct: 55  SELIQQSVSDDVELEEVTIINRPKYTEKVEENGELYLYDIEAAANLKSLLVNKDQNILGK 114

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA----IQVNCGDRL-LIKPRTGD--I 180
             I  I   D     +  SM PL + GDI+           +  G+   +     G+  +
Sbjct: 115 ISIPNIPKCDGAVYVKGDSMYPLLKSGDIIAYKEVPVEIQHIFYGEMYLVSIDIEGEEYL 174

Query: 181 VAKVLISRRGR--SIDLMSLNCCYPVDTVEMSDIEWIARI 218
             K +         I L+S N  +      +S +  +A +
Sbjct: 175 TVKYINQSERGCEWIKLVSYNQHHQPKDFPLSSVRALALV 214


>gi|187933619|ref|YP_001884331.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B]
 gi|187721772|gb|ACD22993.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B]
          Length = 222

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 68/216 (31%), Gaps = 10/216 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I +  E++ L+   L +K G+     N  +             E + K L     
Sbjct: 3   RVGEKIKQAREKNGLSAKVLGKKLGVAEKYINDIELGRKVAN--EAFIERVSKFLKTDLN 60

Query: 68  TIC------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
            I       +L+    +  +    K ++  +     +          +   N   T  + 
Sbjct: 61  DINMVVTDEELMKEKEAFKKIVNTKAEKSEVWTDAFASVIKNVPIYNYSLSNTKGTRELT 120

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              +   G    Q +    + ++  M         L     ++    + + +    G+  
Sbjct: 121 VHSNKVEGY--PQDKVLYLQIENDDMSGFRILKGDLAFAHMVKEFSNNGIFLIDHKGERK 178

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            + + S     + L+S       +T E+ +I  IA+
Sbjct: 179 IRQIRSLGNSKVLLISNGGSLITETTEIKEINIIAK 214


>gi|317403702|gb|EFV84189.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 189

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 16/141 (11%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +H  +   + R+ +   L+   LA  +G+        +           S  S+ K+  
Sbjct: 15  LTH--VGANLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSN-----ISLSSLDKLAQ 67

Query: 64  ATNETICQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           A                    +     ++   +  LL   P+             G    
Sbjct: 68  ALEVGFVDLVSDPAPERRRIEARAWRGKRPGSQAMLLGAAPASCEAQLWLWTLAPG--ET 125

Query: 117 TVGVPEIRSPHNGIYAIQTQD 137
            V  P+    H  IY I+   
Sbjct: 126 YVAEPDPEGWHEMIYVIEGTL 146


>gi|327473016|gb|EGF18443.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK408]
          Length = 158

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + +   LT   +A K G+   ++ + +        R P  E++ K     N +
Sbjct: 42 ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESG-----KRKPGEETLKKFADFFNVS 94


>gi|225387376|ref|ZP_03757140.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme
           DSM 15981]
 gi|225046508|gb|EEG56754.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme
           DSM 15981]
          Length = 1690

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 49/180 (27%), Gaps = 8/180 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I  +     LT + LA + G+  +  ++ +    +G     S E + K LA    
Sbjct: 29  ELAEQIKALRIARGLTQNDLAERMGVPQSQVSRWEN---KGGCEIESLERLCKALAQIRV 85

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-DSGVFPTGNKWNTVGVPEIRSP 126
              +       +  T  ++E  I   +   S + G           +    + +     P
Sbjct: 86  VKVKAWIWKNLEINTGVQQELSIYAEFELYSWAEGSAGREDGNRAESIRQYLELRFPF-P 144

Query: 127 HNGIYAIQTQDTRHKTQDTS-MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               +              +             +     +      L +     ++ +  
Sbjct: 145 AKKAHTKSGVKFLISVDGEAQSAQGILDRPEASVR--WTLYELQHYLCRGERDSLLIRRY 202


>gi|224823652|ref|ZP_03696761.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224604107|gb|EEG10281.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 132

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          +   I    ER   + + LA++AG+  T+    +R       +        K+
Sbjct: 22 LGTRIKAERERRGWSQAALAQRAGISQTTVADLERGTSAATTKLIPIARALKV 74


>gi|188590670|ref|YP_001919515.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188500951|gb|ACD54087.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 222

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 68/216 (31%), Gaps = 10/216 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I +  E++ L+   L +K G+     N  +             E + K L     
Sbjct: 3   RLGEKIKQAREKNGLSAKVLGKKLGVAEKYINDIELGRKVAN--EAFIERVSKFLKTDLN 60

Query: 68  TIC------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
            I        L+    +  +T   K ++  +     +          +   N   T  + 
Sbjct: 61  DINMVVTDEDLMKEKEAFKKTVNTKVEKSEVWTDAFASVIKNVPIYNYSLSNTKGTRELT 120

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              +   G    Q +    + ++  M         L     ++    + + +    G+  
Sbjct: 121 VHSNKVEGY--PQDKVLYLQIENDDMSGFRILKGDLAFAHMVKEFSNNGIFLIDHKGERK 178

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            + + S     + L+S       +T E+ +I  IA+
Sbjct: 179 IRQIRSLGNSKVLLISNGGSLITETTEIKEINIIAK 214


>gi|291557731|emb|CBL34848.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a]
          Length = 302

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++  +T   LA K G+   + +K +         +P  + + KI    + +I  L
Sbjct: 9   LQKLRKQSGITQEQLADKLGVTAQAVSKWENGS------YPDGDLLPKIADIFDVSIDNL 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                      ++    +  +      S   +       
Sbjct: 63  YGRGEEKCSFEQQVLNHMRAIADSSQDSCAEWLKSYLNI 101


>gi|190889915|ref|YP_001976457.1| transcriptional regulator protein, LacI family [Rhizobium etli CIAT
           652]
 gi|190695194|gb|ACE89279.1| probable transcriptional regulator protein, LacI family [Rhizobium
           etli CIAT 652]
          Length = 189

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I   I ++     LT   LA  +G+     ++ +R         P+   + +
Sbjct: 1   MEEQLEQAIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I AA   ++               +++ +                +    +      V  
Sbjct: 56  ICAALGLSLSAFFAEEGQQASPLARRQDQQVWRDPETGYLRRSVSAPGTASDVDIVEVEF 115

Query: 121 PEIRSPHNGIYA 132
           P         +A
Sbjct: 116 PAGARVSFPPHA 127


>gi|317501992|ref|ZP_07960176.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896672|gb|EFV18759.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 102

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I+ + ++H L+    A    +   + +  +         +P  E I K+      
Sbjct: 2   NIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKS-----YPDLEMIIKVSDYFKI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +I +LL       +  + ++K+   + +  +    F +      
Sbjct: 57  SIDELLKNDVQTVKKIDNEKKDKKEVSYTIASFMFFRNCYYLGI 100


>gi|170288077|ref|YP_001738315.1| XRE family transcriptional regulator [Thermotoga sp. RQ2]
 gi|281411883|ref|YP_003345962.1| XRE family transcriptional regulator [Thermotoga naphthophila
           RKU-10]
 gi|170175580|gb|ACB08632.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2]
 gi|281372986|gb|ADA66548.1| transcriptional regulator, XRE family [Thermotoga naphthophila
           RKU-10]
          Length = 176

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 20/185 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E + ++     LT   LA +  L  +  ++ +          PS +++ +IL A   
Sbjct: 2   RIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKT-----SPSIDTLERILEALGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +         +    +K+E+           S            +       P  ++  
Sbjct: 57  DLKHFFSDVEEERVVFKKEERVPVYDEPEGVKSEILMSGVEDKEIDPILVTLEPGAQTEE 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              +  +  +     Q           D+ + +   ++  GD    K        K  + 
Sbjct: 117 ESYH--EGSEFGFVIQGRI--------DLYLDDKRYRLKEGDCFYYKADK-----KHYVK 161

Query: 188 RRGRS 192
             G+ 
Sbjct: 162 NSGKK 166


>gi|75760672|ref|ZP_00740699.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC
          35646]
 gi|74491853|gb|EAO55042.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC
          35646]
          Length = 114

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 9  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 64


>gi|332885359|gb|EGK05608.1| hypothetical protein HMPREF9456_02410 [Dysgonomonas mossii DSM
           22836]
          Length = 231

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 62/236 (26%), Gaps = 26/236 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + + K   E +    +      +     AG+     +              + E +  
Sbjct: 1   MKNLTTK---ERLQFFVKEMGYGRNKFEEYAGIGSGYLS-----SKSTSITSDTIEKVIA 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG- 119
                N       +          K      L     +                   +  
Sbjct: 53  KFPNLNVEWLLTGNGLMIIPENENKNITLRQLKSDYFNQDEKLIPLYELDASAGLTVLFD 112

Query: 120 -----VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL---ILNSAIQVNCGDRL 171
                +P               D     +  SM P+ + GDIL   ++     +  G+  
Sbjct: 113 NQNKQIPIDIIKIPQA---PNCDGALYVRGDSMYPIIKAGDILCYKVITDFENIRYGNIY 169

Query: 172 LIKPRTGD---IVAKVLIS--RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI-LWA 221
           L+    GD   +  K +    +    + L+S N  +     + ++I  +A + +W 
Sbjct: 170 LLDINDGDDQYLTVKYVQKSDKGDNYLKLVSENGHHSPKDEKKNNIRSMAIVKMWV 225


>gi|327490803|gb|EGF22584.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1058]
          Length = 120

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + +   LT   +A K G+   ++ + +        R P  E++ K     N +
Sbjct: 4  ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESG-----KRKPGEETLKKFADFFNVS 56


>gi|281178569|dbj|BAI54899.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 178

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 42/160 (26%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    ++   +    H  
Sbjct: 67  ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESMPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163


>gi|228907010|ref|ZP_04070876.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          IBL 200]
 gi|228852624|gb|EEM97412.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          IBL 200]
          Length = 107

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57


>gi|134297168|ref|YP_001120903.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140325|gb|ABO56068.1| transcriptional regulator, XRE family with cupin sensor
           [Burkholderia vietnamiensis G4]
          Length = 183

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + R+   +  ++P L                        +  P +    
Sbjct: 59  SLAEFFTFELVESRSVVSRRDQMPNLGNDALAFHLVGAGVKDRNMCIMREIYQP-LADTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             + A    +          L +   G+  +L+       GD    + R          +
Sbjct: 118 AEMLAHAGHEGGVVVSGRLELTV--DGETWLLDP------GDGYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                + +++S N 
Sbjct: 166 PSAEQLCEVVSANS 179


>gi|326790576|ref|YP_004308397.1| hypothetical protein Clole_1473 [Clostridium lentocellum DSM
          5427]
 gi|326541340|gb|ADZ83199.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 189

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I  + +    + + +A K G++ T+++  +        R P+ ++I KI    + 
Sbjct: 8  QIGTRIKEIRKSKGFSQAYMAEKIGVNRTTYSNYENNN-----REPNLKTIEKICEILDV 62

Query: 68 TICQ 71
          TI  
Sbjct: 63 TISD 66


>gi|118476856|ref|YP_894007.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118416081|gb|ABK84500.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 114

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 9  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 64

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
          +  LL    +     + +  +
Sbjct: 65 VDTLLHDETTKEANLDSEWTQ 85


>gi|42780467|ref|NP_977714.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987]
 gi|42736386|gb|AAS40322.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987]
          Length = 107

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2   IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL    +     + +  ++         S   F  
Sbjct: 58  VDTLLHDETTRENHLDSEWTQLVKDAMSSGVSKEQFRE 95


>gi|229819917|ref|YP_002881443.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229565830|gb|ACQ79681.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM
          12333]
          Length = 195

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +     LT S LA + G+  ++ ++ +  G     R P+ E +  +       
Sbjct: 14 VGPRLRALRHERGLTLSELAERTGISTSTLSRLESGG-----RKPTLELLLPLARVHGVP 68

Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91
          +  L+  P +       +     
Sbjct: 69 LDDLVGAPPTGDPRVHIRPVYRY 91


>gi|149190228|ref|ZP_01868503.1| hypothetical protein VSAK1_15062 [Vibrio shilonii AK1]
 gi|148835975|gb|EDL52937.1| hypothetical protein VSAK1_15062 [Vibrio shilonii AK1]
          Length = 214

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 58/226 (25%), Gaps = 41/226 (18%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKILAATNETI 69
           E I  + +  N+T + LA   G    +  +      +G  R  PS E +  I        
Sbjct: 7   ERISTLLKEKNITNNELAEAIGKGKATIGRYL---TKGPTRTYPSIEDLSLIADYFKVQA 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--TGNKWNTVGVPEIRSPH 127
             L           E             +       + +          ++ VP      
Sbjct: 64  HWLCFGVGDKHTDAEDITHAANQSAITVAVYNRTEVNALLSGDMPPSVGSIPVPPEYKEC 123

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD-----IVA 182
            G          +    +     Y+   I ++N        D +L +           + 
Sbjct: 124 FG--------VMYPVTGSVS---YKWDCIALVNPNKPWVNDDIVLARLPGNPYPDFFTLV 172

Query: 183 K----VLISRRGRS----IDLMSLNCCYPVDTVEMSDIEWIARILW 220
           K    + +     +    I  +S N           DI+ +  + W
Sbjct: 173 KVGTIIHVWYGDDTTKNAIHQVSDN-----------DIDVLGVVRW 207


>gi|255283010|ref|ZP_05347565.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens
           DSM 14469]
 gi|255266549|gb|EET59754.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens
           DSM 14469]
          Length = 185

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 41/138 (29%), Gaps = 11/138 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + +I + I  +  R  LT   LA +A L     ++ +R  +      PS  ++  ++   
Sbjct: 7   NAQIGKRIRDLRNRKGLTQQELADRAELTKGFISQLERGQV-----SPSVVTLLDLIECL 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPL------LYFPPSGSGGFFDSGVFPTGNKWNTVG 119
             T          +     ++     +      + +    +  +    +        ++ 
Sbjct: 62  GTTASDFFKEAVEEQIVFTEEGFFEKVDEGGNSIQWIVPTAQKYQMEPLLVVMQPHQSLD 121

Query: 120 VPEIRSPHNGIYAIQTQD 137
             +        Y I  + 
Sbjct: 122 EDKPHDGEEFGYVISGKL 139


>gi|325291680|ref|YP_004277544.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325059533|gb|ADY63224.1| transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 197

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  +  ++ LT   LA ++G+     ++ +R         P+   + +I AA   +
Sbjct: 17  IGDRIKTLRAQNGLTLDRLAAESGVSRAMISRIERGEA-----SPTASLLARICAALGLS 71

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +               KK  +                     +      V  P       
Sbjct: 72  LSGFFAEDEEAVSPLVKKRDQQLWKDPETGYVRRAISPPRVGSDVDIVEVEFPAGARVGF 131

Query: 129 GIYA 132
             +A
Sbjct: 132 PPHA 135


>gi|330982590|gb|EGH80693.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 159

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 17/161 (10%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            ++ E   ++   +A + G+ P +             R P  E I + L      I    
Sbjct: 10  RQVMETQEISQEEMAERMGVTPGAVGHWLNG-----KREPKIEVINRFLTELGLPILTTS 64

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI--Y 131
                 G    +   +    Y  P  S                    P   S    I  Y
Sbjct: 65  IPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVE------PYPAGYSDTFEISDY 118

Query: 132 AIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCG 168
             + +      +  SM         +G ++++++ I+   G
Sbjct: 119 KAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAG 159


>gi|295399294|ref|ZP_06809276.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294978760|gb|EFG54356.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 113

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E +    E+  L+   +A K G+   + +  +        R P  E++ K+      
Sbjct: 2  DLGERLKLCREKKGLSQKEVAEKIGIKNNTLSNYESGE-----RRPDYETLCKLADLYEV 56

Query: 68 TICQLLDLPFSDGRTTEKK 86
          ++  L+           K 
Sbjct: 57 SLDYLIKGQEHKEEKENKN 75


>gi|218704902|ref|YP_002412421.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|293404913|ref|ZP_06648905.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412]
 gi|298380556|ref|ZP_06990155.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302]
 gi|300900069|ref|ZP_07118264.1| helix-turn-helix protein [Escherichia coli MS 198-1]
 gi|331646712|ref|ZP_08347815.1| putative oxidoreductase/putative repressor [Escherichia coli M605]
 gi|218431999|emb|CAR12884.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|291427121|gb|EFF00148.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412]
 gi|298277998|gb|EFI19512.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302]
 gi|300356415|gb|EFJ72285.1| helix-turn-helix protein [Escherichia coli MS 198-1]
 gi|323187286|gb|EFZ72597.1| helix-turn-helix family protein [Escherichia coli RN587/1]
 gi|330911245|gb|EGH39755.1| transcriptional regulator yidN, Cro/CI family [Escherichia coli
           AA86]
 gi|331045464|gb|EGI17591.1| putative oxidoreductase/putative repressor [Escherichia coli M605]
          Length = 178

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163


>gi|319935773|ref|ZP_08010202.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319809208|gb|EFW05657.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 255

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 7/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + ++ +    +   LA++ G+   + +K +R         P T+++ ++      
Sbjct: 4   EIANKLLQLRKEKGYSQEALAQELGISRQAVSKWERAEA-----SPDTDNLIELAKLYGI 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRS 125
           ++ QLL    ++   T   + E                      G     V     E+  
Sbjct: 59  SLDQLLLHEPTETEETISDKTEDMKESQEEYAYKYEDGDEYVHVGFDGIHVKDDESEVHV 118

Query: 126 PHNGIYAIQTQDTRHKT 142
              GI+ I         
Sbjct: 119 SWKGIHVIDRNGDGVNI 135


>gi|299534571|ref|ZP_07047903.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1]
 gi|298729944|gb|EFI70487.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1]
          Length = 180

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 8/138 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  +  +  LT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2   QIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLN-----SPSIETLFSILEVLGS 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                 D    + +    +E +    Y                   +   + +       
Sbjct: 57  RPKDFFDDESPEQKVVYTEEDQST--YTDEEKKYEIQWLIPTSNEKEMEPIFLTFAADGE 114

Query: 128 NGIYAIQ-TQDTRHKTQD 144
              +    ++   +  + 
Sbjct: 115 FKQFEPSLSETFIYVVKG 132


>gi|300856997|ref|YP_003781981.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300437112|gb|ADK16879.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 120

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + ++ +    +   LA K G+   + +K +          P   +I K+    N +
Sbjct: 3  ISERLQKLRKHEGYSQEQLAEKLGVTRQAISKWESNQGN-----PDINNIIKLSEIYNVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91
             LL       +  E   KE  
Sbjct: 58 TDYLLKGEEQISKPIEINSKENK 80


>gi|309701401|emb|CBJ00704.1| putative prophage repressor [Escherichia coli ETEC H10407]
          Length = 174

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 46/170 (27%), Gaps = 19/170 (11%)

Query: 45  GIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
              G        S+ KIL    N  +             +    K +PLL    + S   
Sbjct: 2   NGGGAPSSRYISSLAKILKVNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS- 60

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILI 158
                       + +    I S    +  I         +  SM           G  + 
Sbjct: 61  ------------DYMKNSSITSCVQLVGEIPVNTFAVVLESDSMSTSGGGVSIPNGSTVF 108

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           ++    V  G+ +L  P+         +   G  I L+  N  YP   ++
Sbjct: 109 VDPDRTVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPTNPRYPSIMLD 158


>gi|289642165|ref|ZP_06474316.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289508011|gb|EFD28959.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 286

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   + + + + I    +  +++   LAR+AG+     ++ +R       R PS E + +
Sbjct: 1  MPPLNVRDLGDFIRDQRKAAHISVRQLARQAGVSNPYLSQIERG-----LRKPSAEILQQ 55

Query: 61 ILAATNET 68
          I  A   +
Sbjct: 56 IAKALRIS 63


>gi|255658319|ref|ZP_05403728.1| repressor LexA [Mitsuokella multacida DSM 20544]
 gi|260849638|gb|EEX69645.1| repressor LexA [Mitsuokella multacida DSM 20544]
          Length = 205

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 37/220 (16%)

Query: 6   HKKIWEAIDRMAERHNLTPS--GLARKAGL-DPTSFNKSK-RFGIEGR-NRWPSTESIFK 60
            K+I++ I          PS   +    GL   ++ +    R    G   R P+      
Sbjct: 11  QKEIFQFIKAFLLEKGYPPSVREIGEAVGLKSSSTVHGYLSRLEANGMIKRDPTKPRAID 70

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL          + +     +                          +F   N  +    
Sbjct: 71  ILDERPWRQNVPVPMLMGIHKGA-----------------------ALFSERNIRDVYSF 107

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P+     +       +       D  +      +GD+L +      N  D ++ +  T  
Sbjct: 108 PQDMLGTH------KKTYLLHMPDDGLQQAGIAEGDVLFITPQEFANDFDLVVAE--TEG 159

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
                   +      L S            + +  +AR++
Sbjct: 160 RTLVRYFRQDEDGTYLQSTAETADSTEPCKNAVTIVARVI 199


>gi|300694645|ref|YP_003750618.1| transcriptional regulator, xre family [Ralstonia solanacearum
           PSI07]
 gi|299076682|emb|CBJ36021.1| putative transcriptional regulator, XRE family [Ralstonia
           solanacearum PSI07]
          Length = 216

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 24/187 (12%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +HK++   I    +   LT S L+ ++G+  ++ +K++R  I       + E    +  
Sbjct: 21  LNHKEVGARIREARKALGLTLSALSERSGVALSTISKAERGDI-----ALTYEKFAGLAH 75

Query: 64  ATNETICQLLDLPFSDGRTTEKK---EKEIPLLYFPPSGSGGFFDSG-----VFPTGNKW 115
           A      QLL           +         ++Y  P+   G          + P     
Sbjct: 76  ALGLEFEQLLGRRRDPASGPLRPSFTPSGGQVIYDTPNYEYGMLADELTGKRMVPMRAHI 135

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
                    +          ++        ++   +  GD+  L+       GD L    
Sbjct: 136 ----RARSLADFPDYIRHPGEEFVF-VLGGTLELRFENGDVFRLSP------GDSLYFDS 184

Query: 176 RTGDIVA 182
             G +  
Sbjct: 185 AVGHVYL 191


>gi|224824162|ref|ZP_03697270.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224603581|gb|EEG09756.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 180

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R  L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 2  DIGARLRMVRARFGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVSSLKKVLEGLPM 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T+                   E+P L
Sbjct: 57 TLSDFFTFDAEPEHKVFYNADELPNL 82


>gi|153813857|ref|ZP_01966525.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756]
 gi|331088191|ref|ZP_08337110.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848253|gb|EDK25171.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756]
 gi|330408435|gb|EGG87901.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 215

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 61/187 (32%), Gaps = 11/187 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I+ + ++H L+    A    +   + +  +         +P  E I K+      
Sbjct: 2   NIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKS-----YPDLEMIIKVSDYFKI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSP 126
           +I +LL       +  + ++K                   ++   +K+ +++ V      
Sbjct: 57  SIDELLKNDVQTVKKIDNEKKAKKKYLILLLVLCFLGTVIIWGLYSKYQDSIEVDFTMEK 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
           H    + +T++      +        K + L +     V+ G   +      +   K+  
Sbjct: 117 HETYKSNETKEPSMNIANGYF--SVPKDEKLDIQVKGTVDNGKLHITIADKDN---KIYY 171

Query: 187 SRRGRSI 193
              G+ +
Sbjct: 172 QLDGQEL 178


>gi|262174076|ref|ZP_06041752.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451]
 gi|261890256|gb|EEY36244.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451]
          Length = 226

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 34/228 (14%)

Query: 9   IWEAIDRMAERHN------LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +   +  + ++         T   + +  G+  ++++  +        R PS + I ++ 
Sbjct: 8   VASRLRELRKQKEIDDGRPWTADQVGKAIGIGQSTYSNYEN-----EIRKPSLDRIEELA 62

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A    T   L       G          P+L                P G+   ++ + E
Sbjct: 63  AFYKVTPSYLAAFTDHKGSGGGDALHVTPMLTDSAKDVSV------NPAGDYSISIELLE 116

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD---RLLIKPRTGD 179
           +         I          D +M P   KGDI+I+     ++       +        
Sbjct: 117 MHGLRKESILIDA------IPDNAMAPHLIKGDIVIVKREPSLSIETLPLGIYCIKEQNG 170

Query: 180 IV-AKVLISRRGRSIDLMSLNC-CYPVDTVEMSDIE---WIA---RIL 219
               + +       + +   N   Y   T    D +    +    R++
Sbjct: 171 RTWMRWVKREINGMVKVYPENSTHYESHTFSEEDFKQFTILGTIFRVI 218


>gi|229160333|ref|ZP_04288331.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803]
 gi|228623057|gb|EEK79885.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803]
          Length = 107

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
          +  LL    +     + +  +
Sbjct: 58 VDTLLHDETTKEANLDSEWTQ 78


>gi|229114819|ref|ZP_04244233.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3]
 gi|228668884|gb|EEL24312.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3]
          Length = 107

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
          +  LL          + +  +
Sbjct: 58 VDTLLHDETEKEAHLDSEWTQ 78


>gi|167461386|ref|ZP_02326475.1| transcriptional regulator, XRE family protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 183

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 26/178 (14%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAA 64
             + + ++++      +    A+K+ L  T     +        +   PS +S+ K+  A
Sbjct: 2   NNLGKYLEQVRREKKFSLREAAQKSDLSYTYIRDIELGMNRKTKKKVKPSPDSLKKLAEA 61

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIP---------------LLYFPPSGSGGFFDSGVF 109
                 +LL         TE    E                  +   P         G+ 
Sbjct: 62  YGIEYYELLQKAGILDEGTESALDEANSKLDKLIEETVNNSTHISTIPLIRTICAGDGII 121

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
            T N  + V  P        +      D   + Q  SM  +    GDI+ L +A  V 
Sbjct: 122 ATENIEDYVAYP--------LLKGNKPDYALRVQGDSMKDVGIDDGDIVFLKAANWVE 171


>gi|104781203|ref|YP_607701.1| transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110190|emb|CAK14897.1| putative transcriptional regulator [Pseudomonas entomophila L48]
          Length = 181

 Score = 52.5 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 54/193 (27%), Gaps = 23/193 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + ER+NL+   LAR++GL  ++ ++ ++  +      PS  S+ K+L     ++
Sbjct: 4   GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRV-----SPSVSSLKKLLEGIPMSL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +                    +         G     +   G                 
Sbjct: 59  AEFFSFDEPVREERF-------VFRGGEQPDLGRNGLRMLLVGASVEG----RQMRMLRE 107

Query: 130 IYAIQTQDTRHKTQDTSMLPLY--RKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLI 186
           +YA                     R    L ++  + V   GD   I             
Sbjct: 108 LYAPGADSGEPIVHSEGEECGLVTRGTMELWVDGQVSVLNAGDGYYIPTTLPHS----FK 163

Query: 187 SRRGRSIDLMSLN 199
           +      +++S N
Sbjct: 164 NIGPDEAEIISAN 176


>gi|238898657|ref|YP_002924338.1| phage repressor protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466416|gb|ACQ68190.1| phage repressor protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 202

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 53/174 (30%), Gaps = 22/174 (12%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + K + E +    ++  LT + LA  AG+   S  K                 I K+L 
Sbjct: 1   MNEKTLAERLRMAMKKTGLTQAKLADAAGMTQPSIWKLLNGKA---LSSTKLIEIAKVLR 57

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
              E + +   L   + +   +K      ++                 G     V VP++
Sbjct: 58  VRPEWLSEGKGLIRENEKENLEKNISYDDIFSVAVYG---------KNGPTGEKVLVPDL 108

Query: 124 R-SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
             S +   Y +            +  P    G ++++++      GD +     
Sbjct: 109 VKSKYCRAYRLDIN------SGCADAPA---GTLIVVDTEEIPGTGDLVYACIN 153


>gi|297203046|ref|ZP_06920443.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sviceus ATCC 29083]
 gi|197712042|gb|EDY56076.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sviceus ATCC 29083]
          Length = 509

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   I    +    T S LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|126649830|ref|ZP_01722066.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905]
 gi|126593549|gb|EAZ87494.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905]
          Length = 180

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 8/138 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  +  +  LT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2   QIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLN-----SPSIETLFSILEVLGS 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T  +  D    + +    +  E   ++                   +   + +    +  
Sbjct: 57  TPKEFFDDGTPEQKVVYTE--EDQSIFTDEEKKYEIQWLIPTSNEKEMEPIFLTFEANGE 114

Query: 128 NGIYAIQ-TQDTRHKTQD 144
              +    ++   +  + 
Sbjct: 115 FKQFEPSLSETFIYVVKG 132


>gi|304395793|ref|ZP_07377676.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304357087|gb|EFM21451.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 187

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 45/171 (26%), Gaps = 11/171 (6%)

Query: 1   MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST---- 55
           M+   + +++   +  +  +   +   LA   G+   + ++ +R          +     
Sbjct: 1   MSELNTEQRLAVRLSELRLQRGWSLDELAVATGISRATLSRIERGETSPTAALLNRLCVA 60

Query: 56  --ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
              ++ ++L+   E    L+          E        +  P          G    G 
Sbjct: 61  YGLTMSRLLSEVEEESSLLVTSQHQPVWQDEASGFIRRNISPPALHFRCELVEGRLRPGA 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
           + +    P      +                 S     + GD L  +   +
Sbjct: 121 RIDYDAPPIQGLEQHIWLREGG----LTVTMGSQAWTLQPGDCLRFHLTGK 167


>gi|302555556|ref|ZP_07307898.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
 gi|302473174|gb|EFL36267.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
          Length = 191

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 48/170 (28%), Gaps = 20/170 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  +   H  +   LA ++G+  ++ ++++R         P+   + ++ A    
Sbjct: 13  RLGARLAELRAEHGWSLGELAERSGVSRSTLSRAERAET-----SPTAALLNRLCAVYGR 67

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKWN 116
           T+ QLL    ++     +   +                 P     G    G    G    
Sbjct: 68  TMSQLLSEVEAEPAPVMRAPDQPVWQDRTSGFVRRSVSPPHPALRGELVEGRLTAGADIA 127

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
               P +      I+ ++                   GD L +       
Sbjct: 128 Y-DRPPVAGLEQHIWILEG---ALLVTAQDTEHRLGTGDCLRMRVWGPTR 173


>gi|251772558|gb|EES53124.1| transcriptional regulator, XRE family [Leptospirillum
           ferrodiazotrophum]
          Length = 181

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 13/166 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K++ E +  + +  NL+   LA+KAG+  +S ++ +   +      PS  ++ K+ AA  
Sbjct: 2   KQVSERLRELRKNQNLSLRTLAKKAGISASSLSQIESGQV-----SPSIATLEKVCAALE 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRS 125
             I  L D    +        +    +Y   S +     +  F         + +     
Sbjct: 57  LPITTLFDETPGESDPLVMPARNRRRVYSTTSHATVEPLARGFAAKKMQPLLITLDPGGE 116

Query: 126 PHNGIYA-IQTQDTRHKTQDTSMLPL------YRKGDILILNSAIQ 164
                YA I+ ++       T++             D +  +    
Sbjct: 117 VGEQPYAGIKGEEFAVVLSGTTLFEQAGKVYDLGPLDAVYFDPHQP 162


>gi|126459405|ref|YP_001055683.1| XRE family transcriptional regulator [Pyrobaculum calidifontis JCM
           11548]
 gi|126249126|gb|ABO08217.1| transcriptional regulator, XRE family [Pyrobaculum calidifontis JCM
           11548]
          Length = 528

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 62/221 (28%), Gaps = 25/221 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  +     L+ S LA +AG+  ++  + +   +      PS  +++KI  A    
Sbjct: 9   VGERIAALRRERGLSLSELAERAGVSKSTLYEIEMGRV-----APSVTTLWKIANALEVG 63

Query: 69  I---CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                    L           E+      +                G     V V +  +
Sbjct: 64  FGALVPEWVLVSERSVDVLLIERGDGFEAYLMRLKPYAVHVSRPHVGVVSEYVFVAKGAA 123

Query: 126 PHN----GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                   I+  + + T            +     LI+           +  +  + ++ 
Sbjct: 124 VVGPVDSPIFLREGEATEFPGNVPHFYAPFGGETRLIVR---------LVYAQKESAELP 174

Query: 182 A-KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
               ++ R    + L S      V     +   +I R  WA
Sbjct: 175 LGVRVVKRPPGPLGLWS---SGDVREFGTTRGRYIYRSFWA 212


>gi|229189462|ref|ZP_04316479.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC
          10876]
 gi|228594053|gb|EEK51855.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC
          10876]
          Length = 107

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57


>gi|209515043|ref|ZP_03263912.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209504669|gb|EEA04656.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 183

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 62/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  + ++H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +         R+   +  ++P L            S           V  P +    
Sbjct: 59  SLAEFFTFELEAQRSVVSRRADMPNLGNESIELYLAGSSVKDRNMGILREVYQP-LSDTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +   +  +          L +   G   +L+       GD    + R          +
Sbjct: 118 LEMLKHEGHEGGVVVSGQIELTV--DGVTWLLDP------GDSYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                + +++S N 
Sbjct: 166 PSVEHLCEIVSANS 179


>gi|167749663|ref|ZP_02421790.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702]
 gi|167657416|gb|EDS01546.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702]
          Length = 302

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  +T   LA K G+   + +K +         +P  + + KI    + +I  L
Sbjct: 9   LQMLRKQSGITQEQLAAKLGVTAQAVSKWENGS------YPDGDLLPKIADIFDVSIDNL 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                      ++    +  +      S   +       
Sbjct: 63  YGRGEERCSFEQQVVNHMQAIADSSQDSCAEWLENYLNI 101


>gi|158522276|ref|YP_001530146.1| XRE family transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158511102|gb|ABW68069.1| transcriptional regulator, XRE family [Desulfococcus oleovorans
           Hxd3]
          Length = 433

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 49/169 (28%), Gaps = 17/169 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   I  +  +  ++   LAR  G+ P++ ++ +   I     +PS  ++ K+    + 
Sbjct: 252 DLGLRIKELRTKKGMSQVALARGIGVTPSTISQVENNQI-----FPSVPALIKMSEILSV 306

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS----GSGGFFDSGVFPTGNKWNTVGVPEI 123
            +                 E E      P       S                 + +   
Sbjct: 307 DVGYFFQTGAGSAPRVVFSEFEAMPSPVPGMARRLISCRRLMPEDMEAQCVPYIIEIQPG 366

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
                  ++++ ++T    +            + + + A  +  GD + 
Sbjct: 367 AVLDGHFFSLKGEETGFLMEGEL--------HMTLGHGAQPLQTGDLVY 407


>gi|196035367|ref|ZP_03102772.1| transcriptional regulator SinR [Bacillus cereus W]
 gi|195992044|gb|EDX56007.1| transcriptional regulator SinR [Bacillus cereus W]
          Length = 107

 Score = 52.5 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
          +  LL    +     + +  +
Sbjct: 58 VDTLLHDETTKEANLDSEWTQ 78


>gi|47566166|ref|ZP_00237194.1| SinR protein [Bacillus cereus G9241]
 gi|228984453|ref|ZP_04144631.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|229154947|ref|ZP_04283061.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC
          4342]
 gi|229195577|ref|ZP_04322343.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293]
 gi|47556719|gb|EAL15050.1| SinR protein [Bacillus cereus G9241]
 gi|228587826|gb|EEK45878.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293]
 gi|228628505|gb|EEK85218.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC
          4342]
 gi|228775319|gb|EEM23707.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 107

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
          +  LL    +     + +  +
Sbjct: 58 VDTLLHDETTKENHLDSEWTQ 78


>gi|330465134|ref|YP_004402877.1| helix-turn-helix domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328808105|gb|AEB42277.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032]
          Length = 195

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  + E   ++ S LAR+AG+   + +  +        R P+ E+++ I A     
Sbjct: 28  IGRRVRALREARGISLSALARQAGVGKATLSGLENGT-----RNPTLETLYAITAQLGVP 82

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +  +L  P S             L  F  S             G  
Sbjct: 83  LTAVLSAPASGATVRGAAVSATLLEVFEDSDVTYELYRMQVAPGPG 128


>gi|294497044|ref|YP_003560744.1| transcriptional regulator [Bacillus megaterium QM B1551]
 gi|294346981|gb|ADE67310.1| transcriptional regulator [Bacillus megaterium QM B1551]
          Length = 180

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 23/175 (13%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I  +  +  LT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLS-----SPSLETFFSILEVLGC 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              +  ++     +   ++E                +        +    +    +    
Sbjct: 57  EPKEFFEIDTHVQKVVYREEDYTSYCEDEKG-----YHIQWLVHESNEKEMEPIRLILHE 111

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            G +                 P   +    IL   ++V  G R+    +   I  
Sbjct: 112 KGAFKR-------------FEPSLSETFGYILRGCVKVKLGGRIYEAKQGETIYF 153


>gi|257063253|ref|YP_003142925.1| hypothetical protein Shel_05170 [Slackia heliotrinireducens DSM
           20476]
 gi|256790906|gb|ACV21576.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM
           20476]
          Length = 436

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I  + ++  LT + LA+  G+   + +K +    +     PS ES+ K+    + ++
Sbjct: 7   GNYIFHLRKQAGLTQAELAKLVGVTNKAVSKWEVGKSK-----PSVESVRKLSGLFHVSV 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +LL    +  R    K           S +  +  +     G     V 
Sbjct: 62  DELLRQRDAGRRAEITKVVITGGPCAGKSTAMSWVQNAFTQMGYVVLFVP 111


>gi|237733314|ref|ZP_04563795.1| predicted protein [Mollicutes bacterium D7]
 gi|229383695|gb|EEO33786.1| predicted protein [Coprobacillus sp. D7]
          Length = 297

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 36/113 (31%), Gaps = 5/113 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + ++   +   LA +  +   + +K +         +P  ES+  +      TI 
Sbjct: 11  DNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNG-----YPEMESLIILSDLFECTID 65

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            LL    +    T K+  +        + + G     +      +  +   E 
Sbjct: 66  DLLKNDLTQHNPTAKQAYDKHYSLIAKAYTFGVVSILLGVCAYLFAEIYFSEN 118


>gi|228957650|ref|ZP_04119398.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228802035|gb|EEM48904.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 107

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57


>gi|225872075|ref|YP_002753530.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793611|gb|ACO33701.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
          Length = 363

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 51/214 (23%), Gaps = 26/214 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN----RWPSTESIFKIL 62
            ++ + I  + ER  ++    A   G+D  S ++ +R  I        R        K L
Sbjct: 107 DQVAKNIKALRERLEMSQQRFALALGVDQGSVSRWERGKIRPTPETFARMAKLSDDEKKL 166

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               E                        +       +      G+F      + +   +
Sbjct: 167 YFLEEAGVPASYFLGEKMLPEMLFAASEAVAKSLEDSNQVTATKGIFTPQESLSIIPYVQ 226

Query: 123 IRSPHNGIYAIQTQDTRHKTQ------------DTSMLPLYRKGDILIL------NSAIQ 164
                    A+ T  +  +                   P        ++           
Sbjct: 227 DPLKVGTKEAMSTSSSILQFPSSWLPLEGTLQATRFPNPGIPYMSTEVIGIVDVSRRDPD 286

Query: 165 VNCGDRLLIKPRTG-DIVAKVLISRRGRSIDLMS 197
              G  + +    G + +    + R G +  L+ 
Sbjct: 287 RLVGCIVAVIGYEGLEAMV---LRRDGTTYLLLP 317


>gi|167755998|ref|ZP_02428125.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402]
 gi|167703990|gb|EDS18569.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402]
          Length = 291

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 36/113 (31%), Gaps = 5/113 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + ++   +   LA +  +   + +K +         +P  ES+  +      TI 
Sbjct: 5   DNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNG-----YPEMESLIILSDLFECTID 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            LL    +    T K+  +        + + G     +      +  +   E 
Sbjct: 60  DLLKNDLTQHNPTAKQAYDKHYSLIAKAYTFGVVSILLGVCAYLFAEIYFSEN 112


>gi|33594274|ref|NP_881918.1| putative phage repressor protein [Bordetella pertussis Tohama I]
 gi|33564349|emb|CAE43653.1| putative phage repressor protein [Bordetella pertussis Tohama I]
 gi|332383687|gb|AEE68534.1| putative phage repressor protein [Bordetella pertussis CS]
          Length = 203

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            +         SM P+ R  + ++++    ++       +    R G ++ K L   +  
Sbjct: 93  KRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDG 152

Query: 192 SIDLMSLN--CCYPVDTVEMSD---IEWIARILWA 221
               +S N    +    +   D   +  I  +LW+
Sbjct: 153 RWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWS 187


>gi|256396383|ref|YP_003117947.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362609|gb|ACU76106.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM
           44928]
          Length = 189

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 18/174 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I R+     ++ S LAR A +   + +  +    +G    P+ E+++ I      
Sbjct: 12  QIGARIRRLRLERGVSLSALARDAAVGKATLSGLE----DGSRGNPTIETLYAIAGRLGV 67

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPL-----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            I  LL  P   G    +      +       F  + +           G++  +   P 
Sbjct: 68  PIGALLPDPPHPGEKPLETIHGTAVSASLLETFSDADADTELFRLHIRPGHEQLSPAHPP 127

Query: 123 IRSPHNGIY----AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
               +  ++     +   D           P         +         D + 
Sbjct: 128 GTVEYLTVFTGTARVGRPDALLTVP-----PGAHVSWTADVPHTYTAISDDDVY 176


>gi|322378177|ref|ZP_08052662.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. M334]
 gi|321280907|gb|EFX57922.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. M334]
          Length = 151

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  +  +H  +   LA + G+   S++  +    +     P+ E + KI      ++  
Sbjct: 92  RLKELRLQHGFSQEELAEQIGIKQNSYSDWEHGKSK-----PNYEKLEKIADFFGVSLDW 146


>gi|239906995|ref|YP_002953736.1| hypothetical protein DMR_23590 [Desulfovibrio magneticus RS-1]
 gi|239796861|dbj|BAH75850.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 145

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLISRR-GR 191
           +      + +D+ M P+ R+   + L+        G+   +      +V K +     G+
Sbjct: 50  RPHLLVVRMEDSGMEPVIRRKAYVGLDCDDVTARSGEIYALSIPGEGLVIKQVERDSAGQ 109

Query: 192 SIDLMSLNCCYPVDTVEM--SDIEWIARILWASQ 223
            + L+S +  +   ++         + R++W  Q
Sbjct: 110 RLRLVSASPRHAARSLAQGGHAYVVVGRVIWVIQ 143


>gi|237708561|ref|ZP_04539042.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457490|gb|EEO63211.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 226

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 71/225 (31%), Gaps = 24/225 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    E+  +  + +   AGL      K+K  G     +  S+ +I KIL A  E   
Sbjct: 5   ERLQYFMEKKGINDNQMTVNAGLSVGLIGKAKVSG-----KGMSSMNIEKILLAYPELSA 59

Query: 71  QL-------LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                    +     +G  T  +     L     + S G     V   G  ++ V   ++
Sbjct: 60  DWLLTGAGSMLKDDLNGIKTIDEANSSTLPTTSMNPSIGTPYYDVDFIG-GFDEVFNSQV 118

Query: 124 RSPHNGIYAI--QTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGD 179
             P   I     +           SM P    GDI+ L+      +  G+   +   T  
Sbjct: 119 NIPATNIVIRGFEKASLWCNVTGHSMEPKINHGDIIALHQCTLNDIQYGEIYAVVLDTI- 177

Query: 180 IVAKVLISRRG-RSIDLMSLN-CCYPVDTVEMSDI----EWIARI 218
              K+L        +  + +N   Y     + S I    E I  I
Sbjct: 178 RTIKILRRSPDPDKLRFIPINTNDYDEQEFDKSRIINVFEVIGSI 222


>gi|228990384|ref|ZP_04150349.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides
          DSM 12442]
 gi|228996484|ref|ZP_04156123.1| HTH-type transcriptional regulator sinR [Bacillus mycoides
          Rock3-17]
 gi|229004136|ref|ZP_04161937.1| HTH-type transcriptional regulator sinR [Bacillus mycoides
          Rock1-4]
 gi|228756997|gb|EEM06241.1| HTH-type transcriptional regulator sinR [Bacillus mycoides
          Rock1-4]
 gi|228763116|gb|EEM12024.1| HTH-type transcriptional regulator sinR [Bacillus mycoides
          Rock3-17]
 gi|228768910|gb|EEM17508.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides
          DSM 12442]
          Length = 107

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI       
Sbjct: 2  IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIANVLQIP 57


>gi|296102221|ref|YP_003612367.1| XRE family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056680|gb|ADF61418.1| XRE family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 191

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 12/156 (7%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T   +++I   I    E    + S LA +AG+     +K +R         P+   + ++
Sbjct: 5   TDTMNQRISARIRLERESRGWSLSELADRAGVSRAMIHKIERGDS-----SPTATLLARL 59

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             A   ++  L+           +     P+   P +       S           V +P
Sbjct: 60  SGAFGISMSTLIARAEMQEGKLLR-LANQPVWRDPQTHYLRRHVSPRTDLPIDLVQVELP 118

Query: 122 EIRSPHNGI--YAIQTQDTRHKTQDTSMLPLYRKGD 155
                      YA+  Q    +    S   ++++GD
Sbjct: 119 AGSDVPMPASSYALARQLIWLQ----SGELVFQEGD 150


>gi|251778801|ref|ZP_04821721.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083116|gb|EES49006.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 179

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 14/140 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E I  +     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2   QIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLMDILEILGT 56

Query: 68  TICQLLD--------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            + +              +D   T+ +E +  L++  P+      +  +         + 
Sbjct: 57  NLNEFFSETKEEQVIFSNNDMFKTDDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIE 116

Query: 120 VPEIRSPHNGIYAIQTQDTR 139
             E        Y +      
Sbjct: 117 -EEPHDGEEFGYVLSGSIYL 135


>gi|238020740|ref|ZP_04601166.1| hypothetical protein GCWU000324_00630 [Kingella oralis ATCC 51147]
 gi|237867720|gb|EEP68726.1| hypothetical protein GCWU000324_00630 [Kingella oralis ATCC 51147]
          Length = 139

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDI--V 181
             +    A             +M P       L+++ S  ++  G+  +++  +  +   
Sbjct: 37  LFNELGIADAQTCGIVIGYGEAMKPTISGKCELLVDLSDNKLAEGNIYVLEIGSRALIRR 96

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD---IEWIARILWASQ 223
            K+L+ +    I L   N  YP   VE  D   ++ I R+ +  Q
Sbjct: 97  VKLLLRQ----IILACDNPNYPDMVVEGEDLSRLKVIGRVRYIGQ 137


>gi|119962787|ref|YP_946870.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens
           TC1]
 gi|119949646|gb|ABM08557.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens
           TC1]
          Length = 175

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 36/132 (27%), Gaps = 8/132 (6%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           M +   +T + L+   GL     ++ +R         PS  ++ ++    +  + +    
Sbjct: 1   MRKAKGMTLAQLSDVTGLSQAIVSQIERGMAN-----PSFTTLAQLAHGLDIPVGRFFIG 55

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPHNGIYA 132
                    ++     L        G      + P  +       +  P      +  + 
Sbjct: 56  QDESKSPVVRRSDRRNLKNVTRESVGEAVHELLTPNRDGSIEAQWISTPPGHDTSDTPFT 115

Query: 133 IQTQDTRHKTQD 144
              ++  +    
Sbjct: 116 HSGEEFCYIISG 127


>gi|325132066|gb|EGC54762.1| hypothetical protein NMBM6190_1101 [Neisseria meningitidis M6190]
 gi|325137999|gb|EGC60572.1| hypothetical protein NMBES14902_1186 [Neisseria meningitidis
           ES14902]
 gi|325142329|gb|EGC64741.1| hypothetical protein NMB9615945_1082 [Neisseria meningitidis
           961-5945]
 gi|325198286|gb|ADY93742.1| conserved domain protein [Neisseria meningitidis G2136]
          Length = 71

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILWA 221
                D+  K +       + + S N  Y    +++     DI  I R+ W 
Sbjct: 1   MRIGNDLFVKRVQRIP-GKLLVTSENPRYAPFEIDLSNTQDDIAIIGRVEWY 51


>gi|325288923|ref|YP_004265104.1| phage repressor like transcriptional regulator, XRE family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964324|gb|ADY55103.1| phage repressor like transcriptional regulator, XRE family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 259

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
              G         E   P      I+      + +  SM+    R GD++I++    V  
Sbjct: 128 VAAGMPIMADEFLEGFLPVPTK-KIKKNTYIVRAKGESMIDAGIRDGDLIIISPQPTVEQ 186

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
           G+   +    GD+  K         + L   N       +
Sbjct: 187 GES-ALIKVDGDVTIKKFYRY-DHEVRLKPANDKMKDIVI 224


>gi|92112522|ref|YP_572450.1| XRE family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91795612|gb|ABE57751.1| transcriptional regulator, XRE family [Chromohalobacter salexigens
           DSM 3043]
          Length = 178

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S +   I   + R+ E    + S LA +A +  ++ ++ +          P+ E+++ 
Sbjct: 1   MPSPT-PVIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGN-----PTIETLWT 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      T  +LL          E    ++ ++                 +G   ++ G 
Sbjct: 55  LANTLGVTFSELLAEKTGGVTVGEPGGGQVQVVARGRQSPRVEVYLMQLASGEIKHSRGH 114

Query: 121 PEIRSPH 127
           P      
Sbjct: 115 PRGVRER 121


>gi|54022912|ref|YP_117154.1| hypothetical protein nfa9450 [Nocardia farcinica IFM 10152]
 gi|54014420|dbj|BAD55790.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 394

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 5/113 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT     ++ + I +   RH LT + LA   G+D ++  K +     G  R  S   +  
Sbjct: 24  MTELPAGELGDRIAQARSRHGLTQAQLAAAIGIDRSALAKIE-----GGTRRVSALELAG 78

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           I     E I   +        +    ++                 +  F T +
Sbjct: 79  IAEELGERIEWFVLPSPPAIVSHRNLQEPGTPSPEIDKLLERLAWNVEFMTEH 131


>gi|26247719|ref|NP_753759.1| hypothetical protein c1858 [Escherichia coli CFT073]
 gi|110641615|ref|YP_669345.1| hypothetical protein ECP_1437 [Escherichia coli 536]
 gi|191172851|ref|ZP_03034387.1| DNA-binding protein [Escherichia coli F11]
 gi|227886179|ref|ZP_04003984.1| possible transcriptional regulator [Escherichia coli 83972]
 gi|300975406|ref|ZP_07172980.1| helix-turn-helix protein [Escherichia coli MS 200-1]
 gi|300976462|ref|ZP_07173445.1| helix-turn-helix protein [Escherichia coli MS 45-1]
 gi|301046759|ref|ZP_07193881.1| helix-turn-helix protein [Escherichia coli MS 185-1]
 gi|331657437|ref|ZP_08358399.1| putative oxidoreductase/putative repressor [Escherichia coli TA206]
 gi|26108121|gb|AAN80321.1|AE016760_180 Hypothetical protein ydcN [Escherichia coli CFT073]
 gi|47600733|emb|CAE55854.1| hypothetical protein YdcN [Escherichia coli Nissle 1917]
 gi|110343207|gb|ABG69444.1| hypothetical protein YdcN (putative DNA-binding protein)
           [Escherichia coli 536]
 gi|190906857|gb|EDV66460.1| DNA-binding protein [Escherichia coli F11]
 gi|227836844|gb|EEJ47310.1| possible transcriptional regulator [Escherichia coli 83972]
 gi|300301320|gb|EFJ57705.1| helix-turn-helix protein [Escherichia coli MS 185-1]
 gi|300308732|gb|EFJ63252.1| helix-turn-helix protein [Escherichia coli MS 200-1]
 gi|300410034|gb|EFJ93572.1| helix-turn-helix protein [Escherichia coli MS 45-1]
 gi|307553442|gb|ADN46217.1| putative HTH-type transcriptional regulator YdcN [Escherichia coli
           ABU 83972]
 gi|315290641|gb|EFU50013.1| helix-turn-helix protein [Escherichia coli MS 153-1]
 gi|320195607|gb|EFW70232.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
           WV_060327]
 gi|324015156|gb|EGB84375.1| helix-turn-helix protein [Escherichia coli MS 60-1]
 gi|331055685|gb|EGI27694.1| putative oxidoreductase/putative repressor [Escherichia coli TA206]
          Length = 178

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSSTPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163


>gi|28377509|ref|NP_784401.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1]
 gi|308181218|ref|YP_003925346.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|28270341|emb|CAD63242.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1]
 gi|308046709|gb|ADN99252.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 66

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + ++  L+ S LA K+G+  T+ +  +           + E+  K+  A   +  +
Sbjct: 6  RIRELRQKLGLSQSALADKSGVPQTTISAIESGTN------LTYETAKKLARALGVSTDE 59


>gi|118578963|ref|YP_900213.1| XRE family transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118501673|gb|ABK98155.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM
           2379]
          Length = 187

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 59/196 (30%), Gaps = 17/196 (8%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S   I   I ++ +   LT   +A++ G  P   ++ +   +       S   I K   
Sbjct: 1   MSGLNIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLS--KIAKFFD 58

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV--- 120
                     D           + K +  ++ P   S G+    +               
Sbjct: 59  VKIGYFFIEDDDECGFEIVHANQRKSVSKVFAPIGTSHGYSYQSLSFRKQNKKMEPFFLT 118

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              ++     Y+   +     T+    L        ++ + +I ++ GD +         
Sbjct: 119 VTEKANEESAYSHDGEKFLFVTKGDVEL--------ILDDKSISLSEGDSIYFDSSIKH- 169

Query: 181 VAKVLISRRGRSIDLM 196
               L SR G+ ++L+
Sbjct: 170 ---RLRSRDGKEVNLL 182


>gi|320120590|gb|EFE29126.2| GTP pyrophosphokinase [Filifactor alocis ATCC 35896]
          Length = 271

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I R+ E    T   LA K  +   + +  +R   +     P  +++ K+    + 
Sbjct: 2   NIGMNIRRLREERGFTQEKLAEKLNVSFQAVSAWEREEYK-----PDLDNLIKLTEILDV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           ++  +++   +  +T++       +  +  + +  F  +     
Sbjct: 57  SLSAIVEQQETRFQTSDVIYNWEHMKTYVKTVAKNFEMTDTLKA 100


>gi|326792010|ref|YP_004309831.1| cupin [Clostridium lentocellum DSM 5427]
 gi|326542774|gb|ADZ84633.1| Cupin 2 conserved barrel domain protein [Clostridium lentocellum
           DSM 5427]
          Length = 179

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 16/141 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I+++ +++ LT   LA +  L     ++ +R         PS  ++  IL     
Sbjct: 2   DIGAKINQLRKKNGLTQEELADRCELSKGFISQVERGLT-----SPSIATLIDILECLGT 56

Query: 68  TICQLLDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +    +                  +K    +     P +         +       ++V
Sbjct: 57  NLKDFFNESSQEKIVFTKEDVFEKEDKDHNNMITWLIPNAQKNDMEPILIHIEPGGKSSV 116

Query: 119 GVPEIRSPHNGIYAIQTQDTR 139
           G P         Y I      
Sbjct: 117 GAP--HDGEEFGYVIAGNVYV 135


>gi|257869747|ref|ZP_05649400.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803911|gb|EEV32733.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 211

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA K G++  S +K +R        +P+ +++ KI+     T
Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65

Query: 69 ICQLLDLPFSDGRTTEKKE 87
            +LL   +      EK+ 
Sbjct: 66 PNELLSGEWKYVNQAEKEV 84


>gi|33601182|ref|NP_888742.1| putative phage repressor protein [Bordetella bronchiseptica RB50]
 gi|33575617|emb|CAE32695.1| putative phage repressor protein [Bordetella bronchiseptica RB50]
          Length = 209

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
            +         SM P+ R  + ++++    ++       +    R G ++ K L   +  
Sbjct: 93  KRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDG 152

Query: 192 SIDLMSLN--CCYPVDTVEMSD---IEWIARILWA 221
               +S N    +    +   D   +  I  +LW+
Sbjct: 153 RWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWS 187


>gi|114564176|ref|YP_751690.1| XRE family transcriptional regulator [Shewanella frigidimarina
          NCIMB 400]
 gi|114335469|gb|ABI72851.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella frigidimarina NCIMB 400]
          Length = 182

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I  ++  + +   L+   LA++AG+  ++ +  ++  +      PS  S+ K+LA    
Sbjct: 2  DIGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLAGIPM 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          ++     +        +   +   LL  
Sbjct: 57 SLVDFFSIDDGSIGDQKVVYRGNELLDI 84


>gi|225572879|ref|ZP_03781634.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM
          10507]
 gi|317500124|ref|ZP_07958358.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331087647|ref|ZP_08336575.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|225039744|gb|EEG49990.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM
          10507]
 gi|316898479|gb|EFV20516.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330399826|gb|EGG79486.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 211

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA K G++  S +K +R        +P+ +++ KI+      
Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----FPTFDTLEKIMDVLGVM 65

Query: 69 ICQLLDLPFSDGRTTEKKE 87
            +LL   +     +EK+ 
Sbjct: 66 PNELLSGEWKYVNQSEKEV 84


>gi|220924118|ref|YP_002499420.1| hypothetical protein Mnod_4241 [Methylobacterium nodulans ORS 2060]
 gi|219948725|gb|ACL59117.1| hypothetical protein Mnod_4241 [Methylobacterium nodulans ORS 2060]
          Length = 351

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 62/249 (24%), Gaps = 39/249 (15%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E I+R  E   L+    + KAG  P +    +R   +   +  ST ++  +      
Sbjct: 100 EILERIERRLEATGLSERAASEKAG-KPDAIRNLRRALEKDGRQGVSTATLNALAPVLGT 158

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS--------GVFPTGNKWNTVG 119
           T   L      +            +                      G    G+      
Sbjct: 159 TSVWLFAGAGPEEPAKAPSSGSTSISSAAGGEEIVQATQPAVRVLYGGFVEAGSYREISE 218

Query: 120 V----PEIRSPHNGIYAIQTQDTRHKTQDTSML-----PLYRKGDILILN----SAIQVN 166
                PE           + Q      +  SM      P+ R   ++ L+          
Sbjct: 219 FIDVPPEDIFLPPDSEYPRVQQVAFDVRGDSMNALTPRPILRGDRVVALDFEGLHGRVAL 278

Query: 167 CGDRLLIKP------RTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMS-------DI 212
               ++I           +   K L     R      S    Y    V  S       ++
Sbjct: 279 HTGMVVIVQQSREGGHLVERSVKQLEVYEDRYEFHPRSTVSRYKPIVVPHSMEADDGREV 338

Query: 213 EWIARILWA 221
             +A   WA
Sbjct: 339 RILA---WA 344


>gi|167746452|ref|ZP_02418579.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662]
 gi|167653412|gb|EDR97541.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662]
          Length = 171

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             KKI   I  +     +T + L  + G+   + ++ +          P   ++  +  
Sbjct: 16 LDQKKIGAFIALLRRERGITQAELGERIGVTNKTVSRWENGNY-----MPDIATMLSLCE 70

Query: 64 ATNETICQ 71
              +I +
Sbjct: 71 EFEISINE 78


>gi|158312832|ref|YP_001505340.1| putative phage repressor [Frankia sp. EAN1pec]
 gi|158108237|gb|ABW10434.1| putative phage repressor [Frankia sp. EAN1pec]
          Length = 105

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMS 197
               +  SM P    GD  ++        GD ++ +     +  K         S  L S
Sbjct: 3   AVAVRGESMQPTLNDGDTCLVLWGASPRPGDVVVARLPERGLGVKRAEFTDPDGSWWLRS 62

Query: 198 LN----CCYPVD-TVEMSDIEWIARIL 219
            N            V   D+  + R++
Sbjct: 63  DNVRAGTDSATFGMVPAGDV--LGRVV 87


>gi|154250733|ref|YP_001411557.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154154683|gb|ABS61900.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans
           DS-1]
          Length = 204

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
               I   +  +   H  +   LA++AG+   + +  ++  I      PS  S+ K+L  
Sbjct: 23  KGPDIGARLRELRVMHGFSQRELAKRAGVTNGTISLIEQNRI-----SPSVGSLKKVLDG 77

Query: 65  TNETICQLLDLPFSDGRTTEKKEKE 89
              +I   L L          + KE
Sbjct: 78  FPISIADFLTLDMKPRAKVFYQAKE 102


>gi|289578606|ref|YP_003477233.1| XRE family transcriptional regulator [Thermoanaerobacter italicus
          Ab9]
 gi|289528319|gb|ADD02671.1| transcriptional regulator, XRE family [Thermoanaerobacter
          italicus Ab9]
          Length = 129

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + +  + +   LT   LA K G+   +    +        R P TE++ K+      +
Sbjct: 5  KRLATLRKEAGLTQKELADKLGVSRGTIGMYEIGQ-----RDPDTETLQKLSDIFGVS 57


>gi|192291025|ref|YP_001991630.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gi|192284774|gb|ACF01155.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          TIE-1]
          Length = 474

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   + R+ E+  +T   LA   G+ P+  N+ +        R  +   + K+ A     
Sbjct: 6  VGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQ-----RPLTVPVLLKLNATLGID 60


>gi|91210676|ref|YP_540662.1| hypothetical protein UTI89_C1653 [Escherichia coli UTI89]
 gi|117623680|ref|YP_852593.1| hypothetical protein APECO1_579 [Escherichia coli APEC O1]
 gi|218558366|ref|YP_002391279.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|237705412|ref|ZP_04535893.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91072250|gb|ABE07131.1| hypothetical protein YdcN [Escherichia coli UTI89]
 gi|115512804|gb|ABJ00879.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218365135|emb|CAR02845.1| putative DNA-binding transcriptional regulator [Escherichia coli
           S88]
 gi|222033183|emb|CAP75923.1| Uncharacterized HTH-type transcriptional regulator [Escherichia
           coli LF82]
 gi|226900169|gb|EEH86428.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294493300|gb|ADE92056.1| DNA-binding protein [Escherichia coli IHE3034]
 gi|307627046|gb|ADN71350.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UM146]
 gi|312946016|gb|ADR26843.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315289769|gb|EFU49159.1| helix-turn-helix protein [Escherichia coli MS 110-3]
 gi|323952682|gb|EGB48551.1| helix-turn-helix protein [Escherichia coli H252]
 gi|323956844|gb|EGB52577.1| helix-turn-helix protein [Escherichia coli H263]
          Length = 178

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163


>gi|227500450|ref|ZP_03930512.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098]
 gi|227217513|gb|EEI82832.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098]
          Length = 492

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 54/181 (29%), Gaps = 17/181 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S +K+ + +    +   LT + LA   G++    ++ ++         PS + +  
Sbjct: 1   MKKLSIEKMADTVINKRKEMGLTQAKLAEMTGINRAMISRLEQADYT-----PSIDQLQA 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    +  I  L +              +   +    +G  G   + +    N    V +
Sbjct: 56  IGEVLHFEIVDLFEEEEK--AENIIPIDKKYKIAVAGTGYVGMSIATLLSQHNHVEAVDI 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL---NSAIQVNCGDRLLIKPRT 177
              +                  QD  +     + D+ ++   +        D ++I   T
Sbjct: 114 VPEKVDLINKKISP-------IQDDYIEKYLAEKDLDLVATLDGESAYKDADFVVIAAPT 166

Query: 178 G 178
            
Sbjct: 167 N 167


>gi|330817706|ref|YP_004361411.1| transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370099|gb|AEA61455.1| transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 183

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  + ++H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4  EVATRLQFIRKKHGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPM 58

Query: 68 TICQLLDLPFSDGRT 82
          ++ +     F D   
Sbjct: 59 SLAEFFTFEFEDDAP 73


>gi|71278291|ref|YP_271323.1| putative transcriptional regulator [Colwellia psychrerythraea
          34H]
 gi|71144031|gb|AAZ24504.1| putative transcriptional regulator [Colwellia psychrerythraea
          34H]
          Length = 180

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + + +  + E + L+   LA++ GL  ++ +  +R  +      PS  S+ KIL 
Sbjct: 2  DVGKRLKEVREMYGLSQRELAKRVGLTNSTISMIERDAV-----SPSISSLKKILE 52


>gi|77412886|ref|ZP_00789090.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae
           515]
 gi|77161026|gb|EAO72133.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae
           515]
          Length = 117

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + R+ ++  L+   LA+K G+ P + +  +    +G   + + + I +    +   +  
Sbjct: 8   NLIRLRKQKGLSQKELAKKIGMLPQTISNIENQ--KGYPTFSNLDKIARYFNVSATELFG 65

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                  +    +  E          + S        +       
Sbjct: 66  TPQQIELERVMFQTDEYSRKAEKILSAVSVFENFVKKYDYQKIIE 110


>gi|302537531|ref|ZP_07289873.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. C]
 gi|302446426|gb|EFL18242.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. C]
          Length = 509

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T S LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|206559002|ref|YP_002229762.1| MerR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035039|emb|CAR50911.1| MerR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 189

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 10  EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + R    +  E+P L    S +     + V              +    
Sbjct: 65  SLAEFFTFELVESRAVVSRRDEMPNLGN-ESLAFQLVGANVKDRNMCILRETYQPLADTG 123

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +      +          L +   G   +L+       GD    + R          +
Sbjct: 124 PEMLVHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 171

Query: 188 RRGRSI-DLMSLNC 200
                I +++S N 
Sbjct: 172 PSAELICEVVSANS 185


>gi|254386053|ref|ZP_05001368.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1]
 gi|194344913|gb|EDX25879.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1]
          Length = 509

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T S LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|330948546|gb|EGH48806.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 75

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDI 212
              +++++ + + + G  ++      + + K+LI   G  + L S N  YP   +   + 
Sbjct: 3   HDSLVVVDRSRKPSSGSIVIAAVN-NEPLCKILI-LHGDHVVLKSANPAYPPRHILEGEE 60

Query: 213 EWIARIL 219
             I  ++
Sbjct: 61  LSIWGVV 67


>gi|313496911|gb|ADR58277.1| Transcriptional regulator, putative [Pseudomonas putida BIRD-1]
          Length = 233

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 28/231 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR-----------NRWPSTES 57
            + +  + +   LTPS  A +  +     N   KR     R            RW  T  
Sbjct: 5   GDRLRALLQECGLTPSDFAAQRSVTAQHVNNWFKRGVPLARLDELADLFCVHRRWLRTGE 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K                      TE + + + + Y+               +      
Sbjct: 65  GPKHPNPLLRNGLPRPAPANPLTPLTEHRGRVLKVPYYEVRNG--------LLSPVGSKH 116

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       G+ A            ++MLPL      L ++  +            + 
Sbjct: 117 LRLPAKALKGLGVQA--GNAICLAMPTSNMLPLIPLQATLAIDLGMTQVVEGETYALLQN 174

Query: 178 GDIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222
           G +    L      ++ L S     Y V+    +      +E +  +   S
Sbjct: 175 GMLRVNNLSLGPHDTLYLHSHDRRNYTVERYTAAQRQAQGLEILGWVFHWS 225


>gi|226951015|ref|YP_002806106.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226841154|gb|ACO83820.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 220

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 19/224 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--I 58
           M+  S+K     I     +  LT   LA+K G+     N+ +           +  S  +
Sbjct: 1   MSRVSNK-----IKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            K +     +  + + L      +  K  K   +     S          +      +  
Sbjct: 56  GKGINDIGISFEEEVSLESKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKK 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRT 177
            +P + +   GI+  Q +    K ++  M      KGDI       ++       +    
Sbjct: 116 QLPVVGNKVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHN 172

Query: 178 GDIVAKVLISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217
                + L    G  I L    +SL      + V + DI+ IAR
Sbjct: 173 NKRSVRQLKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212


>gi|188587862|ref|YP_001920327.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188498143|gb|ACD51279.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 179

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 14/140 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E I  +     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2   QIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLMDILEILGT 56

Query: 68  TICQLLD--------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            + +               D   T+ +E +  L++  P+      +  +         + 
Sbjct: 57  NLNEFFSETKEEQVIFSNDDMFKTDDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIE 116

Query: 120 VPEIRSPHNGIYAIQTQDTR 139
             E        Y +      
Sbjct: 117 -EEPHDGEEFGYVLSGSIYL 135


>gi|168181028|ref|ZP_02615692.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182668073|gb|EDT80052.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|322807884|emb|CBZ05459.1| putative transcription regulator, lacI/xre family [Clostridium
           botulinum H04402 065]
          Length = 220

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 14/217 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65
           ++ + I     +  LT   LA+K G+     N+ +           +  S  + K +   
Sbjct: 3   RVSDKIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGKGINDI 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  + + L      +  K  K   +     S          +      +   +P + +
Sbjct: 63  GISFEEEVSLESKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVVGN 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
              GI+  Q +    K ++  M      KGDI       ++       +         + 
Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNNKRSVRQ 179

Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217
           L    G  I L    +SL      + V + DI+ IAR
Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212


>gi|314935353|ref|ZP_07842706.1| putative helix-turn-helix containing protein [Staphylococcus
          hominis subsp. hominis C80]
 gi|313656688|gb|EFS20427.1| putative helix-turn-helix containing protein [Staphylococcus
          hominis subsp. hominis C80]
          Length = 137

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I ++ +  N++   LA K G+   S +  +R         P  ++I +I    N 
Sbjct: 4  KIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWERQVSN-----PDLKTILEITKLFNV 58

Query: 68 TICQLLDLPFSDGRTTE 84
          ++ QL+           
Sbjct: 59 SLNQLIKGVEIMQVNKY 75


>gi|229057010|ref|ZP_04196404.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603]
 gi|228720287|gb|EEL71863.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603]
          Length = 107

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2   IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKISAVLQIP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL    +     + +  ++         S   F  
Sbjct: 58  VDTLLHDETTTESHLDSEWTQLVKDAMSSGVSKEQFRE 95


>gi|223985169|ref|ZP_03635261.1| hypothetical protein HOLDEFILI_02567 [Holdemania filiformis DSM
          12042]
 gi|223962878|gb|EEF67298.1| hypothetical protein HOLDEFILI_02567 [Holdemania filiformis DSM
          12042]
          Length = 93

 Score = 52.1 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 1  MTS---FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          M      SH  I   I  +A+   ++   L++ +G+  ++ N             P+  +
Sbjct: 1  MKMSNELSH-TIKLRIQALAKEQGMSLYQLSQISGMTQSTVNNLMNRETS----SPTIAT 55

Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I ++      T+ +  D        T+   KE    
Sbjct: 56 IKRLCDGLGITLAEFFDTDDFMELKTKPTPKEKNKE 91


>gi|332638348|ref|ZP_08417211.1| XRE family transcriptional regulator [Weissella cibaria KACC 11862]
          Length = 180

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 5/111 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I +  E   ++   LA   G+   S +K +          PS +++  +      
Sbjct: 2   EIGHNIQQRREDKGMSQQDLADYLGISRQSISKWENGSA-----LPSFKNVLALSDLFVV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           ++ +L+    +     E  E            +        +     W  +
Sbjct: 57  SLDELVKGDEALIEKFESGESTKITPANIIVFTTLVLGVVTYIIEKIWLHI 107


>gi|21226349|ref|NP_632271.1| putative inosine monophosphate dehydrogenase [Methanosarcina mazei
           Go1]
 gi|20904600|gb|AAM29943.1| putative inosine monophosphate dehydrogenase [Methanosarcina mazei
           Go1]
          Length = 187

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +      LT S LA++AG+      + +   ++     P   ++ KIL A  E   + 
Sbjct: 9   LKKRRNELGLTQSDLAKRAGVSQPLIARIESGDVD-----PRLSTVRKILDAFEEAEKER 63

Query: 73  L------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                          + E   +E+  L      S         P G+    +
Sbjct: 64  QILIRDLMHSPVLHVSPEDSVEEVVNLMHVHGFSQIPVLDRGIPVGSVSEDM 115


>gi|300939145|ref|ZP_07153832.1| helix-turn-helix protein [Escherichia coli MS 21-1]
 gi|300455960|gb|EFK19453.1| helix-turn-helix protein [Escherichia coli MS 21-1]
          Length = 178

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163


>gi|293568751|ref|ZP_06680065.1| putative transcriptional regulator [Enterococcus faecium E1071]
 gi|291588468|gb|EFF20302.1| putative transcriptional regulator [Enterococcus faecium E1071]
          Length = 410

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 6/146 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   + E+I    E    T   LA K G+  +  +K ++       R  S E +  
Sbjct: 1   MNQVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RQLSEEKLNL 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119
           IL +  E +  +  +            + + L+          F+   + P G     V 
Sbjct: 56  ILDSLQEELVPVNRVLIDYLTIHFFSNQYLKLIEAIIGMPIERFEELDYAPKGYIGQYVW 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145
              I   ++    ++        Q  
Sbjct: 116 NQVITIRYSIDDTVKGTVMEFSGQGC 141


>gi|293409776|ref|ZP_06653352.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470244|gb|EFF12728.1| conserved hypothetical protein [Escherichia coli B354]
 gi|323976926|gb|EGB72013.1| helix-turn-helix protein [Escherichia coli TW10509]
          Length = 178

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163


>gi|188494052|ref|ZP_03001322.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli
           53638]
 gi|331652693|ref|ZP_08353704.1| putative oxidoreductase/putative repressor [Escherichia coli M718]
 gi|331662905|ref|ZP_08363815.1| putative oxidoreductase/putative repressor [Escherichia coli TA143]
 gi|188489251|gb|EDU64354.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli
           53638]
 gi|331049799|gb|EGI21865.1| putative oxidoreductase/putative repressor [Escherichia coli M718]
 gi|331058704|gb|EGI30681.1| putative oxidoreductase/putative repressor [Escherichia coli TA143]
          Length = 178

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163


>gi|220924934|ref|YP_002500236.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219949541|gb|ACL59933.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 232

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 36/227 (15%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            + + E I        +    L+   GL   + ++          R    + + +I A  
Sbjct: 20  RELLREWIAGQLRDRRIPQKALSSAIGLSEDAVSRMLSG-----KRTIKADELKRICAFL 74

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +             T +   +++  +      + G F    +     ++   +P +  
Sbjct: 75  GASPP----------LTAQLPARDVSYVKVVGEVAAGAFIDMQYVDFVDYD---IPYVAD 121

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNC---GDRLLIKPRTG--- 178
           P     AI      +  +  S+    R GD +I+ +++        GD ++++ R G   
Sbjct: 122 PRWPKEAIT----AYIVRGESINRQARDGDHIIVLDASAAPRPYQSGDWVVVEQRCGDLV 177

Query: 179 DIVAKVLISRRGRSIDLMSL-NCC--YPVDTVE---MSDIEWIARIL 219
           +   K +      + +L    N         V      ++  I  +L
Sbjct: 178 ETTVKQV-RGSEGAWELWPDSNDDRFQRPLVVAGNGGDNVRVIGFVL 223


>gi|187933000|ref|YP_001885196.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B]
 gi|187721153|gb|ACD22374.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B]
          Length = 179

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 14/140 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E I  +     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2   QIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLMDILEILGT 56

Query: 68  TICQLLD--------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            + +               D   T+ +E +  L++  P+      +  +         + 
Sbjct: 57  NLNEFFSETKEEQVIFSNDDMFKTDDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIE 116

Query: 120 VPEIRSPHNGIYAIQTQDTR 139
             E        Y +      
Sbjct: 117 -EEPHDGEEFGYVLSGSIYL 135


>gi|229074639|ref|ZP_04207662.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock4-18]
 gi|228708521|gb|EEL60671.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock4-18]
          Length = 107

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57


>gi|56419028|ref|YP_146346.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|56378870|dbj|BAD74778.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
          Length = 125

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + + ++ +   LT   L +K  +   S +  +        R P TE++ K+    N T
Sbjct: 7  LGDRLRKLRQEKKLTQEELGKKINVTKVSISGYENGN-----RTPDTETLQKLADFFNVT 61

Query: 69 ICQLLDLPFSDGRTTEKK 86
             LL          +  
Sbjct: 62 TDYLLGRTDHPNPPDQDD 79


>gi|229029511|ref|ZP_04185592.1| Transcriptional regulator, MerR [Bacillus cereus AH1271]
 gi|228731793|gb|EEL82694.1| Transcriptional regulator, MerR [Bacillus cereus AH1271]
          Length = 181

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ AG+ P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|260905809|ref|ZP_05914131.1| Helix-turn-helix family protein [Brevibacterium linens BL2]
          Length = 183

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 20/165 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--- 57
           M+S   ++I  AI R   R +L+ S +AR+AG+  ++ +  +          PS E+   
Sbjct: 1   MSSQPREQIAAAIKRERLRADLSLSEVARRAGIGKSTMSGLEAGTGN-----PSVETMWA 55

Query: 58  --------IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                   + ++L      +  L+         +        LL   P+ +         
Sbjct: 56  LAAALDIPLARLLDPPQHEV-ALVHAKDLPSLPSNTANYAATLLSASPANARRDVYFIQA 114

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
             G   ++   P     H     +     R +    S        
Sbjct: 115 EPGQPRDSQPHPIGTVEH---VILGQGAARIEVLGNSYELHVGDY 156


>gi|291536677|emb|CBL09789.1| transcriptional regulator, XRE family [Roseburia intestinalis
          M50/1]
          Length = 68

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +KI   I  + +   ++   LA  A LD T     +        R PS +S+ KIL A +
Sbjct: 4  EKIGSRIKELRKEKGISQEKLAFSADLDRTYVAGVESG-----KRNPSVKSLEKILVALD 58

Query: 67 ETICQLLDL 75
           +  +    
Sbjct: 59 VSFEEFFKN 67


>gi|284921317|emb|CBG34385.1| putative transcriptional regulator [Escherichia coli 042]
          Length = 178

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHVYRNGG 163


>gi|282601309|ref|ZP_06257987.1| toxin-antitoxin system, antitoxin component, Xre family
           [Subdoligranulum variabile DSM 15176]
 gi|282569451|gb|EFB74986.1| toxin-antitoxin system, antitoxin component, Xre family
           [Subdoligranulum variabile DSM 15176]
          Length = 117

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/104 (9%), Positives = 27/104 (25%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  + E    +   +A+  G   +S N+ +          PS E   +     + 
Sbjct: 3   EVGRRLKALRESIGFSQVKMAQALGTTQSSINRYENGQS-----SPSVELFRRYADYFDV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           ++  +          T   + +                    P 
Sbjct: 58  SLDYIFARTDKPQGETYHFKPKAAPEREELRRFIEMCFDPQSPM 101


>gi|237748329|ref|ZP_04578809.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229379691|gb|EEO29782.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 131

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 5/107 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            KI + I+      N + S LARK G+ P +  K ++         P   ++ K+     
Sbjct: 2   DKIAKRIENCRRHLNFSQSELARKVGVTPQAVQKWEKAKTV-----PRGYTLEKLAGVLG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            +   +               ++    Y     S             
Sbjct: 57  VSPAYIQFGITDASSGGHFSVEDEKTEYLVTGCSKQEEWPFSISREQ 103


>gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 188

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I  +I R  ER  L+ S LA++AG+  ++ ++ +          PS E+++ +  A   
Sbjct: 13 QIAASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGN-----PSVETLWALAVALGV 67

Query: 68 TI 69
            
Sbjct: 68 PF 69


>gi|170756661|ref|YP_001783198.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|170758689|ref|YP_001788899.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169121873|gb|ACA45709.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169405678|gb|ACA54089.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 220

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 14/217 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65
           ++ + I     +  LT   LA+K G+     N+ +           +  S  + K +   
Sbjct: 3   RVSDKIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGKGINDI 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  + + L      +  K  K   +     S          +      +   +P + +
Sbjct: 63  GISFEEEVSLEPKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVVGN 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
              GI+  Q +    K ++  M      KGDI       ++       +         + 
Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNNKRSVRQ 179

Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217
           L    G  I L    +SL      + V + DI+ IAR
Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAR 212


>gi|153940644|ref|YP_001392517.1| putative transcriptional regulator [Clostridium botulinum F str.
          Langeland]
 gi|152936540|gb|ABS42038.1| putative transcriptional regulator [Clostridium botulinum F str.
          Langeland]
 gi|295320504|gb|ADG00882.1| putative transcriptional regulator [Clostridium botulinum F str.
          230613]
          Length = 121

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E +  +     L+   LA+K GL  ++    +    EG       E+I KI      
Sbjct: 3  NLGERLKELRNEAKLSQKDLAKKLGLSSSTVGMIESGKREGNK-----ETIQKIANFFGV 57

Query: 68 TICQLL 73
          +I  L 
Sbjct: 58 SIDYLY 63


>gi|239983013|ref|ZP_04705537.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074]
 gi|291454845|ref|ZP_06594235.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074]
 gi|291357794|gb|EFE84696.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074]
          Length = 509

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|74312212|ref|YP_310631.1| hypothetical protein SSON_1704 [Shigella sonnei Ss046]
 gi|73855689|gb|AAZ88396.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323169618|gb|EFZ55286.1| helix-turn-helix family protein [Shigella sonnei 53G]
          Length = 178

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P S   +    +++  ++                    +G    +    +    H
Sbjct: 67  ISPPQSAMPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124


>gi|152974807|ref|YP_001374324.1| XRE family transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023559|gb|ABS21329.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH
           391-98]
          Length = 107

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +  ++ + LA KAG+  +  +  +R   +     PS + + KI A     
Sbjct: 2   IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQ----NPSIQFLEKIAAVLQIP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           I  LL          + +   +         S   F  
Sbjct: 58  IDTLLHDTTPLENQLDSEWTHLVKEAMNSGVSKEQFRE 95


>gi|258405832|ref|YP_003198574.1| CI repressor [Desulfohalobium retbaense DSM 5692]
 gi|257798059|gb|ACV68996.1| CI repressor [Desulfohalobium retbaense DSM 5692]
          Length = 212

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 54/198 (27%), Gaps = 16/198 (8%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             S LA+  G+   + +  K+      +RW    S    L                    
Sbjct: 20  NQSQLAKVLGVGRAAISLVKQKNSVP-SRWILLLSRAYDLDPVWLAGEDEEPEQDMSSAD 78

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKT 142
             +    +P +        G       P        G P      +   +   Q      
Sbjct: 79  HTEGIATLPWVRPELDPGTGTLRPLERP--------GWPVSAGWLSQWGS-PEQTVVLYA 129

Query: 143 QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              ++ P    GDIL ++ A        + +      I+ + L  +    + L       
Sbjct: 130 PSAALEPEITPGDILAVDQAQTTATDGGIFLLTLPTGIILRRLWLQPDG-VRLEPG---- 184

Query: 203 PVDTVEMSD-IEWIARIL 219
              T++  +  + + R+L
Sbjct: 185 SDQTLQAEEGGDLLGRVL 202


>gi|255010194|ref|ZP_05282320.1| hypothetical protein Bfra3_13720 [Bacteroides fragilis 3_1_12]
 gi|313147988|ref|ZP_07810181.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136755|gb|EFR54115.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 218

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 61/217 (28%), Gaps = 13/217 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I ++ E   +       K G+   SF        + ++   ++ +I  IL+   + 
Sbjct: 2   IKDRIIQIIENKGIAKESFYTKIGMTSASF------RGKAKSMPLNSNAIENILSEIPDL 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             + L            +    P + +   G+  +    +       N   +      + 
Sbjct: 56  NAEWLLTGKGSMLKESSQAIPTPTINYEYKGAPYYNVDFIGGFDLVLNDQTINPDYYINF 115

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIVAKVL 185
             Y              SM P    GD + L              +           K +
Sbjct: 116 EPYNKPG-VVWCNITGHSMEPELSNGDYIALKEMTDPVQYLPYGEIYAIVTESYRTVKRI 174

Query: 186 ISRRGRS-IDLMSLN--CCYPVDTVEMSDIEWIARIL 219
                +  + L+  N    Y    + +S I+ +  +L
Sbjct: 175 GKAEQKDFVRLIPTNKSPEYSPQDIPISMIQKVYAVL 211


>gi|309778439|ref|ZP_07673354.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913802|gb|EFP59627.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 211

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA K G++  S +K +R        +P+ +++ KI+     T
Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGMN-----YPTFDTLEKIMDVLGVT 65

Query: 69 ICQLLDLPFSDGRTTEKKE 87
            +LL   +      EK+ 
Sbjct: 66 PNELLSGEWKYVNQAEKEV 84


>gi|307276550|ref|ZP_07557668.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306506660|gb|EFM75812.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
          Length = 418

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 6/146 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   + E+I    E    T   LA K G+  +  +K ++       R  S E +  
Sbjct: 1   MNQVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGT-----RQLSEEKLNL 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVG 119
           IL +  E +  +  +            + + L+          F+   + P G     V 
Sbjct: 56  ILDSLQEAVIPVNRVLIDYLTIHFFSNQHLKLIEEIIGMPIERFEELDYAPKGYIGQYVW 115

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDT 145
              I   ++    ++        Q  
Sbjct: 116 NQVITIRYSIDDTVKGTVMEFSGQGC 141


>gi|257413316|ref|ZP_05591602.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia
           intestinalis L1-82]
 gi|257203934|gb|EEV02219.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia
           intestinalis L1-82]
          Length = 187

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I+++ +   +T   LA K  +   + +K +          P  ESI KI    + 
Sbjct: 16  EIGNKINQLRKLSGMTQEQLAEKLNVSRQTISKWESDST-----SPDLESIVKISRIFHV 70

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           ++  LL    +       ++  +  L      +
Sbjct: 71  SLDDLLKEGEAGVANKTDEQITLEDLMKINLHN 103


>gi|170721568|ref|YP_001749256.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169759571|gb|ACA72887.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 181

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 23/193 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + ER+NL+   LAR++GL  ++ ++ ++  +      PS  S+ K+L     T+
Sbjct: 4   GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRV-----SPSVSSLKKLLEGIPMTL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +                    +         G     +   G                 
Sbjct: 59  AEFFSFDEPVREERF-------VFRASEQPDLGRNGLRMLLVGASVEA----RQMRMLRE 107

Query: 130 IYAIQTQDTRHKTQDTSMLPLY--RKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLI 186
           +YA                     R    L ++  + V   GD   I             
Sbjct: 108 LYAPGADSGEPIVHAEGEECGLVTRGTVELWVDGQVSVLNSGDGYYIPTTLPHS----FK 163

Query: 187 SRRGRSIDLMSLN 199
           +      +++S N
Sbjct: 164 NIGQDEAEIISAN 176


>gi|187777459|ref|ZP_02993932.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC
           15579]
 gi|187774387|gb|EDU38189.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC
           15579]
          Length = 220

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 14/217 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65
           ++ + I     +  LT   LA+K G+  +  N+ +           +  S  + K +   
Sbjct: 3   RVSDKIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGKGINDI 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  + +           K  K   +     S          +      +   +P I +
Sbjct: 63  GISFEEEVSSEPKREIPINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVIGN 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
              GI+  Q +    K ++  M      KGDI       ++       +         + 
Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYIHYEMENNCI-FLIEHNNKRSVRQ 179

Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217
           L    G  I L    +SL      + V + DI+ IA+
Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAK 212


>gi|323357690|ref|YP_004224086.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323274061|dbj|BAJ74206.1| predicted transcriptional regulator [Microbacterium testaceum
           StLB037]
          Length = 209

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 47/168 (27%), Gaps = 12/168 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++   +  + +   LT + LA  A L     ++ +R         PS  S+ ++  A  
Sbjct: 18  ERLGARVRGLRKARGLTLTQLAEAAALSHPFLSQLERGLAR-----PSMASLERLARALG 72

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +  +L+          + +   +                 +     ++  +      + 
Sbjct: 73  TSRVELIAASEPRRADADAEPSFVLADEGAIGPYAEGTARLLADGPRRFEPLEFSGSNAE 132

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
               Y  +  +     +             L     + V  GD +  +
Sbjct: 133 AGDHYVHEEDEFLTVLEG-----TIVISFGLFGERRLSV--GDSVYCR 173


>gi|325279967|ref|YP_004252509.1| peptidase S24/S26A/S26B [Odoribacter splanchnicus DSM 20712]
 gi|324311776|gb|ADY32329.1| Peptidase S24/S26A/S26B, conserved region [Odoribacter splanchnicus
           DSM 20712]
          Length = 790

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 18/120 (15%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL- 171
                   E      G+  + +     +    SM P    GD  +  + I     G  + 
Sbjct: 662 GEWQQAEEEGWIKTEGMGKLTSGMFIIQANGHSMEPRIMDGDFCVFRANIVGSRIGKIVL 721

Query: 172 ------LIKPRTGDIVAKVLISRRGR----------SIDLMSLNCCYPVDTVEMSDIEWI 215
                       G    K   S + +           I L  LN  Y    +   +   +
Sbjct: 722 VQHPEHYDFENGGSYSIKKYSSEKKQDPETGEWMHERIILYPLNPDYQPIEIRNEEGFIV 781


>gi|189220309|ref|YP_001940949.1| SOS-response transcriptional repressor LexA/UmuD (HTH,
           RecA-mediated autopeptidase) [Methylacidiphilum
           infernorum V4]
 gi|189187167|gb|ACD84352.1| SOS-response transcriptional repressor LexA/UmuD (HTH,
           RecA-mediated autopeptidase) [Methylacidiphilum
           infernorum V4]
          Length = 188

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTG 178
           + +  S    +          K    SM     R GDIL+++ A +   G  ++     G
Sbjct: 78  LEKSLSLDELLIKRPAATFFVKASGNSMEGEGIRDGDILVVDRAEKPKNGSIVVAAIN-G 136

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIE-WIARIL 219
           ++V K L         L S+          M    ++E  I  ++
Sbjct: 137 ELVVKKL-WMEAGHSWLKSV-PAEGAKAFSMEIHEEVELVIWGVV 179


>gi|148360856|ref|YP_001252063.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby]
 gi|296106080|ref|YP_003617780.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282629|gb|ABQ56717.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby]
 gi|295647981|gb|ADG23828.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 224

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 55/217 (25%), Gaps = 23/217 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I R      L+   L  K G+   +    +              S+  IL   + + 
Sbjct: 15  GQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNK--AKAASLVGILNQYDVSC 72

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                L       +  + +     +   +                        I+   + 
Sbjct: 73  SIDWLLEGIGKGPSVIENEFQNYPFLADTVGNLLASEQ--------------AIQKEIDF 118

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV----AKVL 185
                         D +M P Y+ GDI+     I  N  ++ +      +       + L
Sbjct: 119 FKTNNPNAVVITVSDDAMEPEYKVGDIVGGIKFINQNKKNQCVGHNCIVETTEGTFFRRL 178

Query: 186 ISRRGRSIDLMSLNC--CYPVDTVEMSDIEWIARILW 220
           I        L+  N         +    I  IA ++W
Sbjct: 179 IKSED-KYLLVCNNNRTSVSDPVMSADSILSIAPVIW 214


>gi|325915811|ref|ZP_08178110.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325537932|gb|EGD09629.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 462

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
              H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 7  PVLRH-QLGLRLQRLRQRHGLTQAELARRLALSPSYLNQIERNQRP 51


>gi|24376244|ref|NP_720352.1| SOS mutagenesis protein RulA [Shewanella oneidensis MR-1]
 gi|24344710|gb|AAN52952.1| SO_S mutagenesis protein RulA [Shewanella oneidensis MR-1]
          Length = 134

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 12/124 (9%)

Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
                 P          P         S    +    +       Q  SM  +    GD+
Sbjct: 1   MRVIPIPAQAGITGFESPAAEYTQLGLSLDELLIIHPSASFLCVAQGDSMQGVGIYDGDV 60

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWI 215
           LI++       GD ++       +    +I    R + L+S N  +   TV+   D    
Sbjct: 61  LIVDRHETARNGDVIVA--NFNGLFVCKII-DTQRRL-LLSCNEQFQPVTVQEFDDFSIE 116

Query: 216 ARIL 219
             ++
Sbjct: 117 GVVI 120


>gi|21225095|ref|NP_630874.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|256783752|ref|ZP_05522183.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289767634|ref|ZP_06527012.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|6855358|emb|CAB71249.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|289697833|gb|EFD65262.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 192

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/165 (9%), Positives = 45/165 (27%), Gaps = 10/165 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESIFKI 61
           ++   +  +      +   LA ++G+  ++ ++++R          +        ++ ++
Sbjct: 14  RLAARLAELRAERGWSLGELAERSGVSRSTLSRAERAETSPTAAVLNRLCAVYGRTMSRL 73

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L+        L+                   +  P  G  G    G    G        P
Sbjct: 74  LSEVEAEPALLVRAAEQPVWEDRPAGFVRRSVSPPHPGLRGELVEGRLAAGADIAY-DRP 132

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            +      ++ ++      +     +      GD L +       
Sbjct: 133 PVPGLEQHVWLLEG---ALEITAQDVEHHLAAGDCLRMRVWGPTR 174


>gi|319760985|ref|YP_004124922.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC]
 gi|317115546|gb|ADU98034.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC]
          Length = 102

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I +AI     +  L+ + LA++AG+  +  +  +R       R P   ++ +I AA   
Sbjct: 2  NIGQAIQLARSKRKLSQAALAKRAGISVSYLSLLERG-----RRDPPLSTLQRIAAALVM 56

Query: 68 T 68
           
Sbjct: 57 P 57


>gi|312127026|ref|YP_003991900.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311777045|gb|ADQ06531.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 267

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 6  HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           + I+   +  + E  NLT + LA K G+   + +  +        R P  +++ KI 
Sbjct: 2  EENIFAVRLKELREEANLTQNELAEKLGIGRATLSNYELGV-----RKPDIDTLQKIA 54


>gi|254459203|ref|ZP_05072625.1| putative repressor [Campylobacterales bacterium GD 1]
 gi|207084096|gb|EDZ61386.1| putative repressor [Campylobacterales bacterium GD 1]
          Length = 124

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
           +      K    SM P+ +   +++ + + +      + +      +  K    +    +
Sbjct: 34  KGSLFVIKVDGESMEPVIKDRTLVVADLSQRGVVDADIYLVYYENRMWIKK-AKQESDGM 92

Query: 194 DLMSLNCCYPVDTVEMSDIEWIARIL 219
             +S+N  Y     + +D+  +A+ +
Sbjct: 93  TFVSINKEYGHLVYKEADVRVVAKAV 118


>gi|152982223|ref|YP_001353027.1| hypothetical protein mma_1337 [Janthinobacterium sp. Marseille]
 gi|151282300|gb|ABR90710.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 152

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/115 (10%), Positives = 32/115 (27%), Gaps = 2/115 (1%)

Query: 9   IWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +D+  +   + + S LAR +G+   + ++  +          + + + K    +  
Sbjct: 26  IGNRLDQAMKAARIKSQSELARISGVPQATISRILKGVGSKGPETETVKKLAKACRVSFS 85

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVP 121
            + +            E     +                     T    +T+  P
Sbjct: 86  WLNEGTAGDDEHAGAQEDSYPAMDKRIAHAVKLMQQMPEYKLNQTIKIIDTIAEP 140


>gi|312882544|ref|ZP_07742285.1| putative phage repressor [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369944|gb|EFP97455.1| putative phage repressor [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 236

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 48/201 (23%), Gaps = 22/201 (10%)

Query: 39  NKSKRFGIEGRNR-------WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
           N   +   EG  R           +   +++        + + L              + 
Sbjct: 30  NNWLKRKAEGNGRAMEYHISNFGPDVRKRLIETYVTDESERIQLLDKFKTLPPNNAYGLK 89

Query: 92  LLYFPPSGSGGFFDSGVFPTGNK--------WNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
            L      +           G               +P       G+       +     
Sbjct: 90  PLSEFSEWAKLPVYDVHAAAGAGTLVQTEYQIGVFSLPVELLVEYGL--RPEFSSIIFVD 147

Query: 144 DTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID-LMSLNCC 201
             SM P     D L+++    Q    + + +      +  K L      S   ++S N  
Sbjct: 148 GDSMEPTLSDRDRLLVDIREQQHPVANGVYVIRIDEAVYVKRLHWDIEHSFYKVISDNLK 207

Query: 202 YPVDTVEM---SDIEWIARIL 219
           +P   +      +   I + +
Sbjct: 208 HPAFNINHKNGRNFRIIGKAV 228


>gi|293371176|ref|ZP_06617712.1| bacteriophage CI repressor protein [Bacteroides ovatus SD CMC 3f]
 gi|292633737|gb|EFF52290.1| bacteriophage CI repressor protein [Bacteroides ovatus SD CMC 3f]
          Length = 233

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 21/227 (9%)

Query: 8   KIWEAIDRMAERHNLTP-SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +   I R  +  NL   S LA    +   +           RN       + K     +
Sbjct: 2   DVLGIIKRAKQALNLKRDSELAEYLKVSRATVTNW-----GARNSIDFRLLLDKFGDKVD 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                L            + E     +    +            T          +    
Sbjct: 57  YNWLLLGKGNPKHQPRFCQSELVQGEVEIIHNPKTPEPIDDRSVTLYDITAAANLKTLFT 116

Query: 127 HNGIYAIQT--------QDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKP 175
           +   YA+           D        SM P+ + GDI+    ++S   V  G+  L+  
Sbjct: 117 NKQQYALGKIWIPNISVCDGAVYVNGDSMYPILKSGDIIGYKEISSFDNVIYGEIYLVSF 176

Query: 176 RTGD---IVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                  +  K +    +   + L+S N  +    +  + I  +A +
Sbjct: 177 MIDGDEYLAVKYVNRSEKEGYLKLVSYNTHHEPMDIPFASINAMAIV 223


>gi|91790801|ref|YP_551752.1| SOS mutagenesis protein UmuD [Polaromonas sp. JS666]
 gi|91700681|gb|ABE46854.1| UmuD protein. Serine peptidase. MEROPS family S24 [Polaromonas sp.
           JS666]
          Length = 146

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 132 AIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
           + +           SM+      GD+L++    +   G  ++     G+ + K+L  R  
Sbjct: 51  SDKEDAFFMMASGHSMVKFGIFDGDLLLIRKRKRPRDGHIVI-ADVDGEFLVKMLYKR-A 108

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             + L+S N   P    +      +  ++
Sbjct: 109 GQVKLVSGNPEIPDLEPKDGQTIRVWGVV 137


>gi|85716772|ref|ZP_01047739.1| hypothetical protein NB311A_10318 [Nitrobacter sp. Nb-311A]
 gi|85696379|gb|EAQ34270.1| hypothetical protein NB311A_10318 [Nitrobacter sp. Nb-311A]
          Length = 199

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            I + +    E+  L+   L+ + G+  +  +K +  G +   R  S   + + L  
Sbjct: 11 DDILQTLRAAREQTGLSQRDLSARIGVPQSHISKIESGGTD--LRLSSLVELARALDY 66


>gi|117618127|ref|YP_856555.1| putative DNA-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559534|gb|ABK36482.1| putative DNA-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 201

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 19/157 (12%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++ +   L P+ LARK GL   + +             P   S+  I         
Sbjct: 6   ERLRQLMDESGLKPADLARKTGLSKPTLSAILNGTTT----DPRISSVLSIARVVGCDPI 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           QL               K           S           G   + + + +  +  + +
Sbjct: 62  QLYV------------GKSSSEFASSAEISRVPIWELEDIAGQPSDALPLID--TGRHLV 107

Query: 131 YAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
                        +  +     RKGD ++++ A +  
Sbjct: 108 VEDGGHLCAVVAGNDDLAGSGIRKGDFIVIDMATEQR 144


>gi|309701701|emb|CBJ01009.1| putative transcriptional regulator [Escherichia coli ETEC H10407]
 gi|323937517|gb|EGB33787.1| helix-turn-helix protein [Escherichia coli E1520]
          Length = 178

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 8/120 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + ++ ++   + S LA   G+      + +R         P+  +++KI    N    
Sbjct: 10  ATLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFS 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
             +  P S   +    +++  ++                    +G    +    +    H
Sbjct: 65  TFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124


>gi|229101980|ref|ZP_04232694.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-28]
 gi|228681563|gb|EEL35726.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-28]
          Length = 107

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + PS + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPSIQFLEKIAAVLQIP 57


>gi|329957103|ref|ZP_08297670.1| bacteriophage CI repressor protein [Bacteroides clarus YIT 12056]
 gi|328523371|gb|EGF50470.1| bacteriophage CI repressor protein [Bacteroides clarus YIT 12056]
          Length = 219

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 49/206 (23%), Gaps = 23/206 (11%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             +  A+  G+   + +           R      +  I           L         
Sbjct: 18  NKAKFAQLLGVSAQTISAW-------GARNTFDSEL--IYTKCIGLSPDWLLTGEGSMLR 68

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIYAIQTQDTR 139
                   P+        G  + +  F  G ++   +   +P+    +      +     
Sbjct: 69  VNDAPTSEPIPSINQEYKGAPYFNVDFIGGFEFVFNDQTQLPDYYINYPPY--NKPGVMW 126

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIVAKVLISRRGRS-IDL 195
                 SM P    GD++ L              +           K +     +  + L
Sbjct: 127 CNLTGHSMEPEISNGDVIALKEVKSPIEYLPAGEIYGIITDDYRTVKRIRPGAQKGFVRL 186

Query: 196 MSLN--CCYPVDTVEMSDIEWIARIL 219
           +  N    +    +    +E I R+ 
Sbjct: 187 IPANKSPEFCEQEIP---VEMIRRVF 209


>gi|227529402|ref|ZP_03959451.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
 gi|227350681|gb|EEJ40972.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
          Length = 65

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
           V  GD  + +    +   K LI   G+   L  LN  YP+          + +++ ASQ
Sbjct: 3   VEPGDFCIARLGGDEFTFKKLIRDSGQVF-LQPLNPQYPMIPCN-ESCSVVGKVI-ASQ 58


>gi|119487560|ref|ZP_01621170.1| hypothetical protein L8106_26927 [Lyngbya sp. PCC 8106]
 gi|119455729|gb|EAW36865.1| hypothetical protein L8106_26927 [Lyngbya sp. PCC 8106]
          Length = 84

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 29/66 (43%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + ++ +   ++   LAR+ G+   + ++ +          P  +++ ++L +  +TI  L
Sbjct: 16 LKKLRDELGMSQEELARQLGISSRTVSRWEAGDNVPTFTIPQIKALARLLESKGKTIEDL 75

Query: 73 LDLPFS 78
           D    
Sbjct: 76 PDHFGP 81


>gi|78046918|ref|YP_363093.1| putative DNA-binding protein [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78035348|emb|CAJ22993.1| putative DNA-binding protein [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
          Length = 461

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50


>gi|254160927|ref|YP_003044035.1| Repressor protein [Escherichia coli B str. REL606]
 gi|253972828|gb|ACT38499.1| Repressor protein [Escherichia coli B str. REL606]
 gi|253977048|gb|ACT42718.1| Repressor protein [Escherichia coli BL21(DE3)]
          Length = 187

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 54/210 (25%), Gaps = 40/210 (19%)

Query: 12  AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           AI+RM E +   T   L    G+  ++   +  R            E + +    T  ++
Sbjct: 8   AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 60

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L     S   +      E+                     G           R     
Sbjct: 61  NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDGFYIFDREFLPS 106

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +              +        +         +  G  ++     G+I  + +    
Sbjct: 107 AFKN------LFVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 152

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G  I +   N  +     ++ D+E I +I+
Sbjct: 153 GGRIFVEGGNRAF---ECKIEDVEIIGKII 179


>gi|253774148|ref|YP_003036979.1| CI repressor [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297520844|ref|ZP_06939230.1| CI repressor [Escherichia coli OP50]
 gi|242376640|emb|CAQ31350.1| ybl29 [Escherichia coli BL21(DE3)]
 gi|253325192|gb|ACT29794.1| CI repressor [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
          Length = 189

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 54/210 (25%), Gaps = 40/210 (19%)

Query: 12  AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           AI+RM E +   T   L    G+  ++   +  R            E + +    T  ++
Sbjct: 10  AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L     S   +      E+                     G           R     
Sbjct: 63  NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDGFYIFDREFLPS 108

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +              +        +         +  G  ++     G+I  + +    
Sbjct: 109 AFKN------LFVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 154

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G  I +   N  +     ++ D+E I +I+
Sbjct: 155 GGRIFVEGGNRAF---ECKIEDVEIIGKII 181


>gi|319942064|ref|ZP_08016383.1| peptidase S24 and S26 domain-containing protein [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804448|gb|EFW01326.1| peptidase S24 and S26 domain-containing protein [Sutterella
           wadsworthensis 3_1_45B]
          Length = 315

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           E       +          +    SM+      GD+LI +   Q   GD +L     G+I
Sbjct: 209 EDIDLSAWLVRKPNSTFIVEASGDSMIDAGISDGDMLIFDRDAQPRGGDIVLALYD-GNI 267

Query: 181 VAKVLISRRGRSIDLMSLNCC 201
             K L        +L   N  
Sbjct: 268 TVKRLRIV-DGRPELHPENAA 287


>gi|239945081|ref|ZP_04697018.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces roseosporus NRRL 15998]
 gi|239991543|ref|ZP_04712207.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces roseosporus NRRL 11379]
 gi|291448543|ref|ZP_06587933.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus
          NRRL 15998]
 gi|291351490|gb|EFE78394.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus
          NRRL 15998]
          Length = 509

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|154499775|ref|ZP_02037813.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC
           29799]
 gi|150271373|gb|EDM98630.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC
           29799]
          Length = 267

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I ++ ++  L+   LA K  +   + +K +          P  + I ++    N +
Sbjct: 3   LGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQS-----LPDLDFIAQLSDIFNVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
              L+    ++      K++   L             +     G
Sbjct: 58  SDYLIKDEMTEPDELPYKKRNYRLSERSKRIILVIVSAAALVAG 101


>gi|134298753|ref|YP_001112249.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051453|gb|ABO49424.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 67

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + ++ E+  L+ + LA+ A +  ++ +  +        R P  +++ K+     
Sbjct: 5  NLKQLREQKGLSQNQLAKLANVPQSAIHYIENGE-----RNPGLQTVEKLADGLG 54


>gi|270307510|ref|YP_003329568.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS]
 gi|270153402|gb|ACZ61240.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS]
          Length = 72

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 3  SFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
            + K I     E I  + ++  ++   LA +AG+  T     +R       R PS ++I
Sbjct: 1  MMTEKTIEQRFGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGE-----RNPSLKNI 55

Query: 59 FKILAATNETICQLLDL 75
          + I  A    +  L   
Sbjct: 56 YAISKALKVPVSDLFKN 72


>gi|260587052|ref|ZP_05852965.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
           hansenii DSM 20583]
 gi|260542542|gb|EEX23111.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
           hansenii DSM 20583]
          Length = 215

 Score = 51.7 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 11/187 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I+ + ++H L+    A    +   + +  +         +P  E I KI      
Sbjct: 2   NIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKS-----YPDLEMIIKISDYFKI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +LL          + ++K                        G   ++V V      
Sbjct: 57  SVDELLRNDVQSEEKIDNEKKVKKRYLILLLVLCFLGAMIIWGLYGKYQDSVAVNFTMEK 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
           H      +T++      +        K + L +      + G   +      +   KV  
Sbjct: 117 HETYKNNETKEQSINIANGYF--SVPKDEKLSVQVKGDTDDGKLHVTITNQDN---KVYY 171

Query: 187 SRRGRSI 193
              G+ +
Sbjct: 172 QLDGQEL 178


>gi|239928289|ref|ZP_04685242.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC
          14672]
 gi|291436618|ref|ZP_06576008.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC
          14672]
 gi|291339513|gb|EFE66469.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC
          14672]
          Length = 509

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   I    +    T + LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGRLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|218694781|ref|YP_002402448.1| transcriptional repressor DicA [Escherichia coli 55989]
 gi|309793330|ref|ZP_07687757.1| transcriptional repressor DicA [Escherichia coli MS 145-7]
 gi|218351513|emb|CAU97222.1| putative repressor protein of division inhibition from phage
          origin [Escherichia coli 55989]
 gi|308122917|gb|EFO60179.1| transcriptional repressor DicA [Escherichia coli MS 145-7]
          Length = 152

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + K + + I    ++  L+ +GL++ AG+  +S +  +          P  +++ ++  
Sbjct: 18 MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 72

Query: 64 ATNETICQLLDLPFSDGRTTE 84
              +   +L           
Sbjct: 73 VLQCSPTWILFGDEDKTPAPP 93


>gi|220935340|ref|YP_002514239.1| hypothetical protein Tgr7_2172 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996650|gb|ACL73252.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 126

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           V  P++  P  G     ++    +    SM P +  G I+I++ A  V  G  ++ +   
Sbjct: 15  VETPDV-DPGVGSGCATSEPFALRVLGDSMSPEFEHGVIIIVDPAGHVESGSYVVAR--H 71

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            +      +        L++L   +    +    ++ IA ++
Sbjct: 72  EEEYLFRQLLIEEGRYYLVALKDDHRKLEISG--VDAIAGVV 111


>gi|154500477|ref|ZP_02038515.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC
           29799]
 gi|150270708|gb|EDM98004.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC
           29799]
          Length = 259

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++     ++   LA   G+   +  K +    +     P+ +++  I      T+ 
Sbjct: 4   ERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQ-----PNIDNLVAISEYFGVTLD 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
            LL         ++   ++   +   P  +   +
Sbjct: 59  YLLKGDEPGWEESDIPFEDTSQVICAPYRTHYEY 92


>gi|153810274|ref|ZP_01962942.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174]
 gi|149833453|gb|EDM88534.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174]
          Length = 124

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 8/109 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M      +I E I    ++  L+   LA + G++  +  K +        R P  E + K
Sbjct: 24  MKDM---EINEKIRYFRKQRGLSQELLAERTGINVNTIRKYEIGI-----RKPKVEQLKK 75

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           I      ++ + LD+   +        K+I   +               
Sbjct: 76  IADGLEISVIEFLDIEIENEADLIAMLKKISPFFKWDGLLHVLVGEKFL 124


>gi|222150964|ref|YP_002560117.1| hypothetical protein MCCL_0714 [Macrococcus caseolyticus JCSC5402]
 gi|222120086|dbj|BAH17421.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 180

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 12/146 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   DIGKKIKDLRRQKNLTQEELGERTDLSKGYISQLERNLC-----SPSMETFFNILEVLGS 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126
                      + R    K ++            G+  + + P  N+++   V     P 
Sbjct: 57  KPKDFFSEQQYEQRIHYPKSEQTIY----DEYDDGYMINWLVPDSNEFDMEPVIITIEPG 112

Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPL 150
             +       +    +  Q  + + +
Sbjct: 113 KKYKKFLPSMSDSFIYVLQGEASIHI 138


>gi|146291286|ref|YP_001181710.1| putative prophage repressor [Shewanella putrefaciens CN-32]
 gi|145562976|gb|ABP73911.1| putative prophage repressor [Shewanella putrefaciens CN-32]
          Length = 141

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 12/123 (9%)

Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
                 P          P         S    +            +  SM  +    GD+
Sbjct: 1   MRVIPIPAHAGITGFESPAAEYTQLGLSLDELLITHPNASFLCLAEGDSMQDVGIYDGDV 60

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWI 215
           LI++       GD ++       +    LI    R + L+S N  Y   +V    +    
Sbjct: 61  LIVDRHETARNGDVIVA--NFNGLFVCKLI-DTQRRL-LLSCNEQYQPVSVHEYDEFSIE 116

Query: 216 ARI 218
             +
Sbjct: 117 GVV 119


>gi|314937221|ref|ZP_07844566.1| putative helix-turn-helix containing protein [Staphylococcus
          hominis subsp. hominis C80]
 gi|313654654|gb|EFS18401.1| putative helix-turn-helix containing protein [Staphylococcus
          hominis subsp. hominis C80]
          Length = 137

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I ++ +  N++   LA K G+   S +  +R         P  ++I +I    N 
Sbjct: 4  KIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSN-----PDLKTILEITKLFNV 58

Query: 68 TICQLLDLPFSDGRTTE 84
          ++ QL+           
Sbjct: 59 SLNQLIKGVEIMQVNKY 75


>gi|166712847|ref|ZP_02244054.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 461

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50


>gi|14141827|ref|NP_115293.1| hypothetical protein SAVP004 [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|228475859|ref|ZP_04060571.1| putative bacteriophage CI repressor protein [Staphylococcus
          hominis SK119]
 gi|14020888|dbj|BAB47512.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu50]
 gi|228270091|gb|EEK11556.1| putative bacteriophage CI repressor protein [Staphylococcus
          hominis SK119]
          Length = 137

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I ++ +  N++   LA K G+   S +  +R         P  ++I +I    N 
Sbjct: 4  KIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSN-----PDLKTILEITKLFNV 58

Query: 68 TICQLLDLPFSDGRTTE 84
          ++ QL+           
Sbjct: 59 SLNQLIKGVEIMQVNKY 75


>gi|256422517|ref|YP_003123170.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
          2588]
 gi|256037425|gb|ACU60969.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
          2588]
          Length = 97

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I +AI  +  + N+T   LA K G+  T  +  +        + PS  S+ KI  A   
Sbjct: 2  NIGKAIQTLRTKKNITQKELAEKIGITQTGLSYIETGV-----KHPSENSLEKIANALGS 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|218705070|ref|YP_002412589.1| transcriptional repressor DicA [Escherichia coli UMN026]
 gi|291283201|ref|YP_003500019.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615]
 gi|300895972|ref|ZP_07114540.1| transcriptional repressor DicA [Escherichia coli MS 198-1]
 gi|301326444|ref|ZP_07219796.1| transcriptional repressor DicA [Escherichia coli MS 78-1]
 gi|218432167|emb|CAR13055.1| putative repressor protein of division inhibition from phage
          origin [Escherichia coli UMN026]
 gi|290763074|gb|ADD57035.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615]
 gi|300360122|gb|EFJ75992.1| transcriptional repressor DicA [Escherichia coli MS 198-1]
 gi|300846860|gb|EFK74620.1| transcriptional repressor DicA [Escherichia coli MS 78-1]
 gi|320652127|gb|EFX20458.1| transcriptional repressor DicA [Escherichia coli O157:H- str. H
          2687]
 gi|320657721|gb|EFX25510.1| transcriptional repressor DicA [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
          Length = 152

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + K + + I    ++  L+ +GL++ AG+  +S +  +          P  +++ ++  
Sbjct: 18 MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 72

Query: 64 ATNETICQLLDLPFSDGRTTE 84
              +   +L           
Sbjct: 73 VLQCSPTWILFGDEDKTPAPP 93


>gi|218694976|ref|YP_002402643.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|300823240|ref|ZP_07103372.1| helix-turn-helix protein [Escherichia coli MS 119-7]
 gi|331667806|ref|ZP_08368670.1| putative oxidoreductase/putative repressor [Escherichia coli TA271]
 gi|331677280|ref|ZP_08377962.1| putative oxidoreductase/putative repressor [Escherichia coli H591]
 gi|218351708|emb|CAU97423.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|300524204|gb|EFK45273.1| helix-turn-helix protein [Escherichia coli MS 119-7]
 gi|323170076|gb|EFZ55731.1| helix-turn-helix family protein [Escherichia coli LT-68]
 gi|331065391|gb|EGI37286.1| putative oxidoreductase/putative repressor [Escherichia coli TA271]
 gi|331075131|gb|EGI46444.1| putative oxidoreductase/putative repressor [Escherichia coli H591]
          Length = 178

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 34/118 (28%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P     +    ++   ++                    +G    +    +    H
Sbjct: 67  ISPPQPATPSVYDPQQHAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124


>gi|122879139|ref|YP_200480.6| transcriptional regulator [Xanthomonas oryzae pv. oryzae
          KACC10331]
          Length = 461

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50


>gi|188577297|ref|YP_001914226.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521749|gb|ACD59694.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 461

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50


>gi|220911413|ref|YP_002486722.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus
           A6]
 gi|219858291|gb|ACL38633.1| transcriptional regulator, XRE family [Arthrobacter
           chlorophenolicus A6]
          Length = 198

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 45/135 (33%), Gaps = 10/135 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  R ++T + LA   G+  ++ ++ +        R P+ E +  +  A    
Sbjct: 12  VGPRLKALRLRRDVTLTALAAATGISVSTLSRLESGQ-----RRPNLELLLPLAQAHQVP 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + +L+  P +       +        ++       G      + P G        P++  
Sbjct: 67  LDELVGAPATGDPRVHLRPMTAHGMTIIPLTRKPGGVQAYKHIVPAGPVEE--PNPQVHE 124

Query: 126 PHNGIYAIQTQDTRH 140
            +  +Y +  +    
Sbjct: 125 GYEWLYVLNGKLRMV 139


>gi|163813936|ref|ZP_02205330.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC
          27759]
 gi|158450806|gb|EDP27801.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC
          27759]
          Length = 242

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    ++  L     A K G+   + +K +R        +P  + +  I    +  
Sbjct: 4  IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKA-----YPDLDRLVCICEILDVQ 58

Query: 69 ICQLLDLPFSDGRTTEKKEK 88
          + +L+     +  T E+  +
Sbjct: 59 VGELVYGKGEESETPEEVSR 78


>gi|310827041|ref|YP_003959398.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612]
 gi|308738775|gb|ADO36435.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612]
          Length = 183

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  ++ I + I R+ E   L+   LAR +G+  +   + +R         P+  +++K
Sbjct: 1   MDTM-NQIIAKNIKRLREERKLSMEELARLSGVSKSMLAQIERGEGN-----PTISTLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           +          L   P +     +  E +  L       +   F   
Sbjct: 55  LSNGMGVPFDALTVRPKNPYEIVKTAELQPLLEDDGRVKNYALFPDD 101


>gi|294631998|ref|ZP_06710558.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. e14]
 gi|292835331|gb|EFF93680.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. e14]
          Length = 509

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|293433714|ref|ZP_06662142.1| transcriptional repressor DicA [Escherichia coli B088]
 gi|291324533|gb|EFE63955.1| transcriptional repressor DicA [Escherichia coli B088]
          Length = 135

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + K + + I    ++  L+ + L++ AG+  +S +  +          P  +++ ++  
Sbjct: 1  MNEKTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 55

Query: 64 ATNETICQLLDLPFSDGRTTE 84
              +   +L           
Sbjct: 56 VLQCSPTWILFGDEDKTPDPP 76


>gi|254390574|ref|ZP_05005789.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus
          ATCC 27064]
 gi|294815656|ref|ZP_06774299.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus
          ATCC 27064]
 gi|326444005|ref|ZP_08218739.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          clavuligerus ATCC 27064]
 gi|197704276|gb|EDY50088.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus
          ATCC 27064]
 gi|294328255|gb|EFG09898.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus
          ATCC 27064]
          Length = 509

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|254389389|ref|ZP_05004617.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294817070|ref|ZP_06775712.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326445868|ref|ZP_08220602.1| putative XRE family transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703104|gb|EDY48916.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294321885|gb|EFG04020.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 246

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 13/156 (8%)

Query: 1   MTSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +  ++ +A    +  +     +T + LA   G+  ++ ++ +        R P+ E
Sbjct: 1   MDRTTDDEVLDAVGPRLRALRRDRGITLADLATTTGVSESTLSRLENGQ-----RRPTLE 55

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEI---PLLYFPPSGSGGFFDSGVFPTGN 113
            +  +    N  +  L+  P +       K         +       G      + P   
Sbjct: 56  LLLPLARTYNVPLDDLVGAPRTGDPRVHLKPVSRFGITFVPLSRRPGGVHAFKMIIPARP 115

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
                  P        +Y +  +      +    LP
Sbjct: 116 GPLE-PAPRTHEGFEWLYVLSGRLRLVLGERDLTLP 150


>gi|46202976|ref|ZP_00208741.1| COG1396: Predicted transcriptional regulators [Magnetospirillum
          magnetotacticum MS-1]
          Length = 71

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +H  +   +         +    A KAG+     +   R   +   R  +   + +
Sbjct: 2  MTDLTHDDVRARLSAAIREAG-SQKAFAHKAGVSAGFLSDVIRGRRDPGERVLNALDLRR 60

Query: 61 I 61
          +
Sbjct: 61 V 61


>gi|308272656|emb|CBX29260.1| hypothetical protein N47_J02410 [uncultured Desulfobacterium sp.]
          Length = 98

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          I  + E+  L+   LA   G    + ++ +    EG     + +++ KI  AT  
Sbjct: 39 IAELREKKGLSQRQLAELMGTSQQAISRIESGEYEG----FTLKTLEKIAEATGM 89


>gi|239625419|ref|ZP_04668450.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519649|gb|EEQ59515.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 141

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E I  + ++  LT   LA K GL  ++  K +   +    R     ++FK+      
Sbjct: 2  ELGERIRSLRKKKGLTQEELASKLGLQKSAVAKYENGRVTNIKRA----TLFKMAEILEV 57

Query: 68 TICQLLDLPFSDGRTTE 84
          +  +L+      G+   
Sbjct: 58 SPGELMYGKEDKGQDDH 74


>gi|84623394|ref|YP_450766.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|84367334|dbj|BAE68492.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
          311018]
          Length = 461

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50


>gi|211907951|gb|ACJ12471.1| DNA binding regulatory protein [Rhodococcus sp. T104]
          Length = 197

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 62/180 (34%), Gaps = 12/180 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +++ +   + R  +   L+ + LAR++GL   + +K ++         P+ E++      
Sbjct: 8   TNQLVARNVRRYRQERGLSLAELARRSGLSKQTLSKVEQGVGN-----PTVETLA----L 58

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
               +        ++  +    ++    ++    G        V+ +G   N +   +  
Sbjct: 59  LGAALDMPARRLLTEWGSPVFVQRRDEDVWTTEDGRSERILDEVYGSGYVRNHLVRLDRG 118

Query: 125 SPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVN-CGDR-LLIKPRTGDIV 181
           +   G  A +   T H     S         D + L +   V   GD   + +  + D+ 
Sbjct: 119 ATTAGPDASEPPGTLHHVYVISGWLRTGPLTDPVTLEAGDFVRFPGDVPYVYEGLSDDVT 178


>gi|21242064|ref|NP_641646.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21107469|gb|AAM36182.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 461

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50


>gi|328948203|ref|YP_004365540.1| hypothetical protein Tresu_1336 [Treponema succinifaciens DSM
          2489]
 gi|328448527|gb|AEB14243.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 107

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   + ++ +  NL+   LA KAGL   + N  +     G+  WPS +++ KI  A  
Sbjct: 8  NRLSANLKKIRKAKNLSQFELAEKAGLSDQTINSIE-----GKRLWPSDKTMIKIANALE 62

Query: 67 ETICQL 72
              Q 
Sbjct: 63 TDAYQF 68


>gi|198282281|ref|YP_002218602.1| XRE family transcriptional regulator [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|198246802|gb|ACH82395.1| transcriptional regulator, XRE family [Acidithiobacillus
          ferrooxidans ATCC 53993]
          Length = 152

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 3  SFSH-KKIWEAIDRMAERHNLTPSGLARKA-GLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
             H   I + + ++ +R  LT + L + A GL  ++ ++ +  G   +  W +  ++ K
Sbjct: 1  MLDHMDDIGDRVKKIRKRLGLTQAELGKHAGGLSKSAVHQWENGGT--KPAWDALTALRK 58

Query: 61 ILAATNETICQ 71
           L    + + Q
Sbjct: 59 NLGINPDWVMQ 69


>gi|297191369|ref|ZP_06908767.1| UDP-N-acetylglucosamine transferase [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|197720621|gb|EDY64529.1| UDP-N-acetylglucosamine transferase [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 509

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA   G   ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|168185962|ref|ZP_02620597.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C
          str. Eklund]
 gi|169295926|gb|EDS78059.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C
          str. Eklund]
          Length = 107

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I    +   ++ + LA+ AG+ P+  +  +      ++  PS E + K+       
Sbjct: 2  LGDNIKAFRKEKGMSLNKLAKSAGMSPSYLSDLENN----KSVNPSMEKLNKLAEILEVR 57

Query: 69 ICQLLDLPFSDGRTTEKKEK 88
          I         +    E++ K
Sbjct: 58 IEDFYKEDSDEIDKLEEEMK 77


>gi|313204771|ref|YP_004043428.1| helix-turN-helix domain protein [Paludibacter propionicigenes
          WB4]
 gi|312444087|gb|ADQ80443.1| helix-turn-helix domain protein [Paludibacter propionicigenes
          WB4]
          Length = 186

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +I E I  +  +  L+   LA +AG++  +  + +    E   R  +   I K+L    
Sbjct: 2  NEIGEKIKELRRKKGLSQEELAEQAGINLRTIQRIENNESE--PRGNTMHLICKVLDIHA 59

Query: 67 ETICQLLDLPFSDGRTTEK 85
          E I        +       
Sbjct: 60 EDILDYGKQTDNSFMVYFH 78


>gi|218462689|ref|ZP_03502780.1| probable transcriptional regulator protein, LacI family [Rhizobium
           etli Kim 5]
          Length = 189

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I   I  +     LT   LA  +G+     ++ +R         P+   + +
Sbjct: 1   MEQQLEQAIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I AA   ++               +++++                +    +      V  
Sbjct: 56  ICAALGLSLSAFFAEEGQQASPLARRQEQQVWRDPETGYIRRSVSAPGTASDVDIVEVEF 115

Query: 121 PEIRSPHNGIYA 132
           P         +A
Sbjct: 116 PAGARVSFPPHA 127


>gi|157160330|ref|YP_001457648.1| putative bacteriophage CI repressor protein [Escherichia coli HS]
 gi|157066010|gb|ABV05265.1| putative bacteriophage CI repressor protein [Escherichia coli HS]
          Length = 189

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 54/210 (25%), Gaps = 40/210 (19%)

Query: 12  AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           AI+RM E +   T   L    G+  ++   +  R            E + +    T  ++
Sbjct: 10  AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L     S   +      E+                     G           R     
Sbjct: 63  NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALCEDGFYIFDREFLPS 108

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +              +        +         +  G  ++     G+I  + +    
Sbjct: 109 AFKN------LFVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 154

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G  I +   N  +     ++ DIE I +I+
Sbjct: 155 GGRIFVEGGNRAF---ECKIEDIEIIGKII 181


>gi|82777001|ref|YP_403350.1| hypothetical protein SDY_1742 [Shigella dysenteriae Sd197]
 gi|81241149|gb|ABB61859.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 178

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163


>gi|302872413|ref|YP_003841049.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis
          OB47]
 gi|302575272|gb|ADL43063.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis
          OB47]
          Length = 285

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  + E  N++ S LA   G+   +    +        R P+ +++ KI    N T+  
Sbjct: 7  RLKELREEKNISRSDLAEILGVSTQTIANYENGH-----REPNFDTLLKIADYFNVTVDY 61

Query: 72 LLDLPFSDGRTTEKKEKE 89
          L+          +  ++ 
Sbjct: 62 LIGRSEYRTVEEQISKRS 79


>gi|58426058|gb|AAW75095.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae
          KACC10331]
          Length = 466

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 13 LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 55


>gi|83594673|ref|YP_428425.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577587|gb|ABC24138.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC
           11170]
          Length = 125

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 2/110 (1%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++I   I  + ER  LT S LA   G    + +  +R  +    +    + + K+L
Sbjct: 1   MELGQQIGRKIRTLRERRGLTQSQLASLLGKSGETISNFERGKVVTSIQT--LDQMAKVL 58

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                     + +  +D +   ++ +         +      +      G
Sbjct: 59  NVRLMDFFDGVAVGAADRQHRAERARSSHAQTVRNAADLLPEEDLEILAG 108


>gi|312884735|ref|ZP_07744436.1| hypothetical protein VIBC2010_19520 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367648|gb|EFP95199.1| hypothetical protein VIBC2010_19520 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 222

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 69/229 (30%), Gaps = 34/229 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     ++I  A         LT   L  K GL+  +    +    +   +    + + +
Sbjct: 12  MKMTQGERIRSA----RNLSGLTRQQLLDKYGLNTNTLQSWELERNKLSAK--GAKKLAE 65

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  +    + Q   L         K                       F T    +    
Sbjct: 66  VFESEGLKVSQEWLLFGEGLPPQTKFFDSG---------------EEFFQTSISEDE--- 107

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKPR 176
             I++  N       Q       D SM P++ K   +    I +    +  G   +++  
Sbjct: 108 -AIQNEINFFKKNNKQAIVKVVPDDSMEPVFSKHSYVGGVLIPDGCYDLYLGKYSIVETS 166

Query: 177 TGDIVAKVLIS-RRGRSIDLMSLNCCYP---VDTVEMSDIEWIARILWA 221
            GD V + +   ++  + +L ++N           E + I  +A ILW 
Sbjct: 167 AGDTVIRRVHRAKKPDTYNLSAINPNTESDCPVIYEAT-IVSLAPILWY 214


>gi|260664721|ref|ZP_05865573.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
 gi|260561786|gb|EEX27758.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
          Length = 103

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I  +   H+LT   LA+   + PT+ +  +    E     PS +++ K+ +  N 
Sbjct: 2  NISSRIKYLRNEHHLTQKELAKMLNVKPTTISGWELGRNE-----PSIDTLKKLSSLFNV 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|86131733|ref|ZP_01050330.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134]
 gi|85817555|gb|EAQ38729.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134]
          Length = 251

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 57/223 (25%), Gaps = 17/223 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I ++     L+    A    L   +    +    E     P  +++ KI    +  I
Sbjct: 5   GKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSE-----PKIDTVIKIANYFSIPI 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW----NTVGVPEIRS 125
             LL    +     + K             +            N +    +         
Sbjct: 60  DDLLTKELTVNSLLKFKADLTTDHEQITKETFATIPCITPKNTNDYLLYNDREAFVADMP 119

Query: 126 PHNGIYAIQTQDTRHKTQD---TSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTG 178
                   +         +   +S        DI+I     +          L++     
Sbjct: 120 VLQLPVNPEKDFRAFTVDNLEMSSNDKGLFPKDIVIGEHIPKNVYKKLNNGHLILAVFND 179

Query: 179 DIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
            +V +      G +I L + +         + +I+ + RI + 
Sbjct: 180 RLVLRRCY-LSGNTITLRADHKNIDDLEFPIKEIKELWRIRYV 221


>gi|293607287|ref|ZP_06689628.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292814379|gb|EFF73519.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 189

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 46/158 (29%), Gaps = 18/158 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   +  + +    +   LA  AG+   + ++ +   +      P+   + K+ AA   
Sbjct: 13  RIAHRLRALRQDRGWSLDELAGLAGVSRATLSRLENAEV-----SPTASVLGKLCAAHGM 67

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116
           T+ +L+ +   D      +  +   +                   G   +     G +  
Sbjct: 68  TMSRLMMMVEDDFAPLVPEHAQAVWVDDSAGFRRRSVSPPAQQLAGEVLACELAPGARIA 127

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
               P     H+ +  ++ Q  +      +        
Sbjct: 128 YDQSPRPGLEHH-LLMLEGQL-QITVDGQTYALAPGDC 163


>gi|187919965|ref|YP_001888996.1| XRE family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718403|gb|ACD19626.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
           PsJN]
          Length = 190

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 45/161 (27%), Gaps = 20/161 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +  +    N +   LA+ +G+   + ++ +   +      P+   + K+  A   
Sbjct: 14  RIAQRLRALRAERNWSLDELAKLSGVSRATLSRLENAAV-----SPTANVLGKLCVAYGL 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116
            + +L+ +   D      +  +                       G         G +  
Sbjct: 69  PMSRLMHMVEEDFAPLVPRAAQPLWTDASVGFRRRSVSPPAQALSGEALECELDAGVQIA 128

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
               P     H+ I        +      S     + GD L
Sbjct: 129 YDASPRPGLEHHLILLDGE--LQITVDGQS--HGLQPGDCL 165


>gi|83590661|ref|YP_430670.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
           39073]
 gi|83573575|gb|ABC20127.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC
           39073]
          Length = 252

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +   +   + +  E   LT + LAR AG+      + ++  ++   +    E +  +L  
Sbjct: 134 TGGSLGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQPSLKT--LERVGAVLDI 191

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           +                    + +++ +     S
Sbjct: 192 SPCYFIADDAGVDEVLNQMSPELRQLLIEPQVQS 225



 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  + E    +   LA++AG+  +  ++ +R       + PS +++ K+  A N   
Sbjct: 5  GKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGA-----KRPSLKTLDKVARALNLPR 59

Query: 70 CQ 71
           Q
Sbjct: 60 EQ 61



 Score = 39.7 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            E I  + ER     + LA  AG+  +  ++ +R  +     +P+ +++ KI AA  
Sbjct: 74  GERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNV-----YPAIDTLKKITAALE 125


>gi|294626974|ref|ZP_06705564.1| transcriptional regulator [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
 gi|292598636|gb|EFF42783.1| transcriptional regulator [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
          Length = 461

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50


>gi|294664868|ref|ZP_06730187.1| transcriptional regulator [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
 gi|292605360|gb|EFF48692.1| transcriptional regulator [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
          Length = 461

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50


>gi|197285559|ref|YP_002151431.1| transcriptional regulator [Proteus mirabilis HI4320]
 gi|194683046|emb|CAR43543.1| putative transcriptional regulator [Proteus mirabilis HI4320]
          Length = 186

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 61/165 (36%), Gaps = 14/165 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I ++I R  ++  L+ + +AR+AG+  ++ ++ +          PS E+++ I  A N
Sbjct: 9   EIISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGN-----PSIETLWAICVALN 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               QL+  P  + +   K +            +            + +  +  P  +  
Sbjct: 64  IPFSQLISSPKPEVKVIRKGDGFKISAEKAYYHAFLLSSCPNGAKRDIYTVIAQP-GKDR 122

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            +  ++    +        +++           ++  +++ GD +
Sbjct: 123 VSDPHSKNVTEHILIISGRAIVGTL--------DNQQELSPGDYI 159


>gi|52786374|ref|YP_092203.1| SinR [Bacillus licheniformis ATCC 14580]
 gi|319645045|ref|ZP_07999278.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2]
 gi|52348876|gb|AAU41510.1| SinR [Bacillus licheniformis ATCC 14580]
 gi|317392854|gb|EFV73648.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2]
          Length = 113

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 4   IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           +  LLD         +   +   L+    +  
Sbjct: 60  VHTLLDEKDETEYDGQLDSEWENLVRDAMASG 91


>gi|325927009|ref|ZP_08188283.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|325542628|gb|EGD14096.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 461

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            H ++   + R+ +RH LT + LAR+  L P+  N+ +R    
Sbjct: 8  LRH-QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRP 50


>gi|324995381|gb|EGC27293.1| transcriptional regulator [Streptococcus sanguinis SK678]
          Length = 108

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LAR AG+   + +  +R         PS     KI    NE
Sbjct: 41 QLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95

Query: 68 T 68
           
Sbjct: 96 N 96


>gi|312197902|ref|YP_004017963.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311229238|gb|ADP82093.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 197

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +K +   + R  E   L+   LAR++GL   + +K ++    G     S E+I   L  T
Sbjct: 5   NKLVARNVRRFREERKLSLGELARRSGLSKQTLSKIEQGT--GNPTIDSIEAIADALHLT 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
              +      P    R            +        +
Sbjct: 63  MRRLVTEWGSPLYVQRAQGAAWDGQHDDWSVRMMDQVY 100


>gi|215486344|ref|YP_002328775.1| transcriptional repressor DicA [Escherichia coli O127:H6 str.
          E2348/69]
 gi|254792795|ref|YP_003077632.1| transcriptional repressor DicA [Escherichia coli O157:H7 str.
          TW14359]
 gi|260843554|ref|YP_003221332.1| putative phage repressor protein CI [Escherichia coli O103:H2
          str. 12009]
 gi|261257017|ref|ZP_05949550.1| putative phage repressor protein CI [Escherichia coli O157:H7
          str. FRIK966]
 gi|215264416|emb|CAS08774.1| predicted phage repressor protein [Escherichia coli O127:H6 str.
          E2348/69]
 gi|254592195|gb|ACT71556.1| transcriptional repressor DicA [Escherichia coli O157:H7 str.
          TW14359]
 gi|257758701|dbj|BAI30198.1| predicted phage repressor protein CI [Escherichia coli O103:H2
          str. 12009]
 gi|323977164|gb|EGB72251.1| helix-turn-helix protein [Escherichia coli TW10509]
          Length = 135

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + K + + I    ++  L+ + L++ AG+  +S +  +          P  +++ ++  
Sbjct: 1  MNEKTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 55

Query: 64 ATNETICQLLDLPFSDGRTTE 84
              +   +L           
Sbjct: 56 VLQCSPTWILFGDEDKTPDPP 76


>gi|218896313|ref|YP_002444724.1| transcriptional regulator SinR [Bacillus cereus G9842]
 gi|218541453|gb|ACK93847.1| transcriptional regulator SinR [Bacillus cereus G9842]
          Length = 107

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +  ++ + LA KAG+  +  +  +R       + P  + + KI A     
Sbjct: 2  IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNL----QKNPFIQFLEKIAAVLQIP 57


>gi|15643421|ref|NP_228465.1| hypothetical protein TM0656 [Thermotoga maritima MSB8]
 gi|4981179|gb|AAD35740.1|AE001739_3 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 176

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 50/185 (27%), Gaps = 20/185 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E + ++     LT   LA +  L  +  ++ +          PS +++ +IL A   
Sbjct: 2   RIGEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKT-----SPSIDTLERILEALGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +         +    +K+E+           S            +       P  ++  
Sbjct: 57  DLKHFFSDVEEERIVFKKEERVPVYDEPEGVKSEILMSGVEDKEIDPILVTLEPGAQTEE 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              +         + +    L               ++  GD    K        K  + 
Sbjct: 117 ESYHEGSEFGFVIQGRIDLYLDG----------KRYRLKEGDCFYYKADK-----KHYVK 161

Query: 188 RRGRS 192
             G+ 
Sbjct: 162 NPGKK 166


>gi|330962297|gb|EGH62557.1| peptidase S24, S26A and S26B [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 145

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                 Y  +  D   +     +      GD+L+++ +     GD ++       I  + 
Sbjct: 43  VREPHAYLARIDDEGMRGVGMCL------GDMLVVDRSQYAEHGDIVVASLNARQI-CRR 95

Query: 185 LISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
           L   RG  + L S N  YP   V +  D+  +  +
Sbjct: 96  LY-MRGEFVVLQSENSDYPSLQVTDNDDLIILGVV 129


>gi|271969495|ref|YP_003343691.1| nner membrane protease subunit 1-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512670|gb|ACZ90948.1| nner membrane protease subunit 1-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 101

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSIDL 195
            R + +  SMLP  R GD L +     V  GD ++ +       ++ K           L
Sbjct: 1   MRVRVEGDSMLPALRSGDWLWVRRGAPVRPGDLVVARLPSDPSRLIVKRAAWEADGGWWL 60

Query: 196 MSLN 199
            S N
Sbjct: 61  ESDN 64


>gi|260892597|ref|YP_003238694.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260864738|gb|ACX51844.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 151

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       +   I     R  LT + LA+K  + P +  K +R         P  E++ K
Sbjct: 1  MPRKGTDDLGLRIKFARLRKGLTQAELAQKLNVHPETLGKYERGTNR-----PDAETLRK 55

Query: 61 ILAATNET 68
          +      +
Sbjct: 56 LADILEVS 63


>gi|188585658|ref|YP_001917203.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350345|gb|ACB84615.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 89

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   + ++ +   L+   LA K G   ++ ++ +          PS E ++KI  A + 
Sbjct: 28 DIKRQVIKLRKEKGLSQKELAEKIGTKQSAISRLENESYN-----PSIELLYKIAKACDR 82

Query: 68 TIC 70
           + 
Sbjct: 83 DLH 85


>gi|167755494|ref|ZP_02427621.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402]
 gi|237733722|ref|ZP_04564203.1| predicted protein [Mollicutes bacterium D7]
 gi|167704433|gb|EDS19012.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402]
 gi|229383320|gb|EEO33411.1| predicted protein [Coprobacillus sp. D7]
          Length = 287

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 45/173 (26%), Gaps = 10/173 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            F + +I   + R+ +  NL+   LA + G+   + +K +R         P T+++  + 
Sbjct: 11  KFMNIEIANRLVRLRKEKNLSQEALANELGISRQAVSKWERAEA-----SPDTDNLILLA 65

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVG 119
                ++  LL     +  +   ++                        G      +   
Sbjct: 66  KLYGMSLDDLLKTDQKEFESGNNQQASKEKTEEDKKQKKKESVHISLKHGIHVTGEDGEE 125

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           V    +  +     +            +       +        +    D   
Sbjct: 126 VHVGWNGIHVEDPKEDSRIHIDGSGVFVDDKKYDQEEW--RKIRKEKGWDYYY 176


>gi|134503|sp|P22753|SINR_BACLI RecName: Full=HTH-type transcriptional regulator sinR
 gi|551703|gb|AAA22439.1| flaD (sin) homologue; putative [Bacillus licheniformis]
          Length = 111

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 2   IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           +  LL+         +   +   L+    +  
Sbjct: 58  VHTLLNEKDETEYDGQLDSEWENLVRDAMASG 89


>gi|325299362|ref|YP_004259279.1| hypothetical protein Bacsa_2257 [Bacteroides salanitronis DSM
           18170]
 gi|324318915|gb|ADY36806.1| hypothetical protein Bacsa_2257 [Bacteroides salanitronis DSM
           18170]
          Length = 253

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 61/241 (25%), Gaps = 45/241 (18%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           WE I  + E+     +  +   G+    +  +          R PS  +  KI     + 
Sbjct: 4   WERIKFIMEKEGYNKNSFSYAIGMSNNVTITRLIN-----EKRKPSPNTCAKIAQRFPQY 58

Query: 69  ICQLL----------------------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
             + +                                  + ++I    F           
Sbjct: 59  NPEWILNGTGNMYRTETGTHIEDPNTATEKAVHQLIARNEGRQIENALFMNVPLIHVRAQ 118

Query: 107 GVFPTGNKW-NTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILN 160
             +  G      +  +P +    +  Y         + +  SM          GDI++  
Sbjct: 119 CGYLNGYGDKEYIESLPTLPVIVDKTY--HGNYRLFEAEGDSMDDGSRHSICDGDIVLGR 176

Query: 161 SAIQV-------NCGDRLLIKPRTGDIVAKVLISRRGRS--IDLMSLNCCYPVDTVEMSD 211
              +              +I  RT  I  K +I        I   SLN  +    V + +
Sbjct: 177 EVQRPLWQYKLHINDWYFIIVHRTEGISIKKIIDHDVEHGIITCHSLNNMFQDYKVPLDE 236

Query: 212 I 212
           +
Sbjct: 237 V 237


>gi|227356056|ref|ZP_03840447.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|227163833|gb|EEI48741.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 187

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 61/165 (36%), Gaps = 14/165 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I ++I R  ++  L+ + +AR+AG+  ++ ++ +          PS E+++ I  A N
Sbjct: 10  EIISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGN-----PSIETLWAICVALN 64

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               QL+  P  + +   K +            +            + +  +  P  +  
Sbjct: 65  IPFSQLISSPKPEVKVIRKGDGFKISAEKAYYHAFLLSSCPNGAKRDIYTVIAQP-GKDR 123

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            +  ++    +        +++           ++  +++ GD +
Sbjct: 124 VSDPHSKNVTEHILIISGRAIVGTL--------DNQQELSPGDYI 160


>gi|153955926|ref|YP_001396691.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856268|ref|YP_002473390.1| hypothetical protein CKR_2925 [Clostridium kluyveri NBRC 12016]
 gi|146348784|gb|EDK35320.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569992|dbj|BAH07976.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 200

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
              +  + + HN++ + LA K G+   + +K +       +R P TE++  + +  N +
Sbjct: 69  MNRLSLLRKSHNMSQAELAEKLGVTQQTISKYENG-----SREPDTETLKLLSSIFNVS 122



 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 39/153 (25%), Gaps = 14/153 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++    N+T   LA+   +  ++    ++       R P  E++  I      + 
Sbjct: 3   GEKLKKLRMDKNMTQQELAKILKISSSTIGMYEQN-----RRSPDIETLKLIADYFQCST 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             LL     +        ++   +     +   G     +    N          R P  
Sbjct: 58  DYLLGKNDIENMNRLSLLRKSHNMSQAELAEKLGVTQQTISKYENG--------SREPDT 109

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
               + +                R  D   +  
Sbjct: 110 ETLKLLSSIFNVSIDYLLGATNIRNHDTTYITP 142


>gi|270297085|ref|ZP_06203284.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273072|gb|EFA18935.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 219

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 50/206 (24%), Gaps = 23/206 (11%)

Query: 23  TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82
             +  A+  G+   + +           R      +  I           L         
Sbjct: 18  NKAKFAQLLGVSAQTISAW-------GTRNTFDSEL--IYTKCIGLSPDWLLTGEGAMLR 68

Query: 83  TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW---NTVGVPEIRSPHNGIYAIQTQDTR 139
           T       PL        G  + +  F  G ++   +   +P+    +      +     
Sbjct: 69  TNDVSTSEPLPSINQEYKGAPYYNVDFIGGFEFVSNDQTQLPDYYINYPPY--NKPGVMW 126

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIVAKVLISRRGRS-IDL 195
                 SM P    GD++ L              +           K +     +  + L
Sbjct: 127 CNLTGHSMEPEISNGDVIALKEVRSPIEYLPAGEIYGIITDDYRTVKRIRPGAQKGFVRL 186

Query: 196 MSLN--CCYPVDTVEMSDIEWIARIL 219
           +  N    +    +    +E I R+ 
Sbjct: 187 IPANKSPEFCEQEIP---VEMIRRVF 209


>gi|257878016|ref|ZP_05657669.1| peptidase S24 [Enterococcus faecium 1,230,933]
 gi|257881198|ref|ZP_05660851.1| peptidase S24 [Enterococcus faecium 1,231,502]
 gi|257884861|ref|ZP_05664514.1| peptidase S24 [Enterococcus faecium 1,231,501]
 gi|257889785|ref|ZP_05669438.1| peptidase S24 [Enterococcus faecium 1,231,410]
 gi|257892278|ref|ZP_05671931.1| peptidase S24 [Enterococcus faecium 1,231,408]
 gi|258616495|ref|ZP_05714265.1| signal peptidase I [Enterococcus faecium DO]
 gi|260559066|ref|ZP_05831252.1| peptidase S24 [Enterococcus faecium C68]
 gi|261207600|ref|ZP_05922285.1| peptidase S24 [Enterococcus faecium TC 6]
 gi|289565112|ref|ZP_06445565.1| signal peptidase I [Enterococcus faecium D344SRF]
 gi|293563417|ref|ZP_06677866.1| signal peptidase I [Enterococcus faecium E1162]
 gi|293568075|ref|ZP_06679413.1| signal peptidase I [Enterococcus faecium E1071]
 gi|294614826|ref|ZP_06694721.1| signal peptidase I [Enterococcus faecium E1636]
 gi|294617505|ref|ZP_06697136.1| signal peptidase I [Enterococcus faecium E1679]
 gi|294622298|ref|ZP_06701341.1| signal peptidase I [Enterococcus faecium U0317]
 gi|257812244|gb|EEV41002.1| peptidase S24 [Enterococcus faecium 1,230,933]
 gi|257816856|gb|EEV44184.1| peptidase S24 [Enterococcus faecium 1,231,502]
 gi|257820699|gb|EEV47847.1| peptidase S24 [Enterococcus faecium 1,231,501]
 gi|257826145|gb|EEV52771.1| peptidase S24 [Enterococcus faecium 1,231,410]
 gi|257828657|gb|EEV55264.1| peptidase S24 [Enterococcus faecium 1,231,408]
 gi|260074823|gb|EEW63139.1| peptidase S24 [Enterococcus faecium C68]
 gi|260077983|gb|EEW65689.1| peptidase S24 [Enterococcus faecium TC 6]
 gi|289163119|gb|EFD10966.1| signal peptidase I [Enterococcus faecium D344SRF]
 gi|291589296|gb|EFF21106.1| signal peptidase I [Enterococcus faecium E1071]
 gi|291592288|gb|EFF23902.1| signal peptidase I [Enterococcus faecium E1636]
 gi|291596245|gb|EFF27507.1| signal peptidase I [Enterococcus faecium E1679]
 gi|291598190|gb|EFF29288.1| signal peptidase I [Enterococcus faecium U0317]
 gi|291604678|gb|EFF34163.1| signal peptidase I [Enterococcus faecium E1162]
          Length = 183

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/104 (9%), Positives = 36/104 (34%), Gaps = 13/104 (12%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
            +    +       + ++         +  SM  + ++GD++++    ++   D ++ + 
Sbjct: 12  WLVFKYLLVSVFLAFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQL 71

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G I  K +I   G               + +   ++   +++
Sbjct: 72  ADGTIYIKRVIGLPG------------ENVSYQNDQLKINGKVV 103


>gi|312792346|ref|YP_004025269.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312179486|gb|ADQ39656.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 274

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  + E  N++ S LA   G+   +    +        R P+ +++ KI    + T+  
Sbjct: 7  RLKELREEKNISRSDLAEILGVSTQTIANYENGH-----REPNFDTLLKIAEYFDVTVDY 61

Query: 72 LLDLPFSDGRTTEKKEKE 89
          L+          +  ++ 
Sbjct: 62 LVGRSDYRTVEEQISKRS 79


>gi|254390836|ref|ZP_05006047.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326444447|ref|ZP_08219181.1| putative XRE family transcriptional regulator [Streptomyces
          clavuligerus ATCC 27064]
 gi|197704534|gb|EDY50346.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 199

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   +  +  +  ++ + +A   G+  ++ ++ +        R PS E +  I  A  
Sbjct: 12 DEVGPRLRWLRTQRGVSLTAIAEATGISKSTLSRLESGQ-----RRPSLELLLPIAQAHQ 66

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIP 91
            + +L+  P           + + 
Sbjct: 67 VPLDELVGAPEVGDPRIRTSPRSVN 91


>gi|167628808|ref|YP_001679307.1| helix-turn-helix domain protein [Heliobacterium modesticaldum
          Ice1]
 gi|167591548|gb|ABZ83296.1| helix-turn-helix domain protein [Heliobacterium modesticaldum
          Ice1]
          Length = 119

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            I   I  + ++  LT   LA+   + P   +  +R          S + +  IL  T
Sbjct: 2  DSIGNRIKHLRKQRGLTQPQLAKLLNVSPQVISNWERG-YTPTIAPESIDKLASILETT 59


>gi|148927479|ref|ZP_01810979.1| transcriptional regulator, XRE family [candidate division TM7
          genomosp. GTL1]
 gi|147887175|gb|EDK72643.1| transcriptional regulator, XRE family [candidate division TM7
          genomosp. GTL1]
          Length = 528

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     +KI + I +       T + +A+  G   ++ N+ +  G        S E + +
Sbjct: 21 MEPLYKQKIGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQN-----LSMEMLAR 75

Query: 61 ILAATN 66
          I    N
Sbjct: 76 ISDVLN 81


>gi|148927476|ref|ZP_01810976.1| transcriptional regulator, XRE family [candidate division TM7
          genomosp. GTL1]
 gi|147887172|gb|EDK72640.1| transcriptional regulator, XRE family [candidate division TM7
          genomosp. GTL1]
          Length = 92

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     +KI + I +       T + +A+  G   ++ N+ +  G        S E + +
Sbjct: 1  MEPLYKQKIGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQN-----LSMEMLAR 55

Query: 61 ILAATN 66
          I    N
Sbjct: 56 ISDVLN 61


>gi|254384685|ref|ZP_05000024.1| signal peptidase [Streptomyces sp. Mg1]
 gi|194343569|gb|EDX24535.1| signal peptidase [Streptomyces sp. Mg1]
          Length = 139

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLM 196
             +    SM+P    GD L++     V  GD ++++       +V K  + RR     ++
Sbjct: 13  VFEVTGPSMVPTLLHGDRLVVRHGKAVRPGDVVVLRHPFQQDLLVVKRAVERRPGGWWVL 72

Query: 197 SLNC 200
             N 
Sbjct: 73  GDNP 76


>gi|163789213|ref|ZP_02183655.1| transcriptional regulator [Flavobacteriales bacterium ALC-1]
 gi|159875428|gb|EDP69490.1| transcriptional regulator [Flavobacteriales bacterium ALC-1]
          Length = 195

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 55/191 (28%), Gaps = 14/191 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG----RNRWPSTESIFKIL 62
           + I E I  +    +L     +++ G+  T+ +       +     +   P  + +  I+
Sbjct: 2   EGIDEKISAIINHFHLNNFSFSKRIGVTGTTVDSIVNGRPQADGSRKKTKPGYDVLNAII 61

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIP-LLYFPPSGSGGFFDSGVFPTG------NKW 115
              N     L        ++   K +    +         G  +    P        + +
Sbjct: 62  DTFNVNPDFLFSKSTIMLKSDVVKGQTYSGMPQVIAVNQTGDENVVYVPVKARAGYLDGY 121

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLL 172
                 E     N  +         + +  SM+  +  GD++    +     +  G   +
Sbjct: 122 GDPEYIETLPSFNMPHLTNGTYRCFEVKGNSMVRTFFDGDLVFGKYVEDLNDIKDGRIYV 181

Query: 173 IKPRTGDIVAK 183
           I  +   I  K
Sbjct: 182 IVSKNDGISIK 192


>gi|126699176|ref|YP_001088073.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|115250613|emb|CAJ68437.1| Transcriptional regulator, HTH-type [Clostridium difficile]
          Length = 404

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KI + I R+ +  NLT   LA+  G+   + +K +         +P  E +  +    
Sbjct: 2  QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56

Query: 66 NET 68
          N +
Sbjct: 57 NVS 59


>gi|317488752|ref|ZP_07947286.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA]
 gi|316912122|gb|EFV33697.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA]
          Length = 112

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 11/74 (14%)

Query: 1  MTSFSHK------KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          M+  S K      +I + +  M      +   LA + GL   + +K +R         P 
Sbjct: 1  MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAES-----SPD 55

Query: 55 TESIFKILAATNET 68
          T ++  +      +
Sbjct: 56 TGNLIALAKLYGVS 69


>gi|218289581|ref|ZP_03493801.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|258511692|ref|YP_003185126.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218240231|gb|EED07414.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|257478418|gb|ACV58737.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 145

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + +    +   LA +AG+     +  +R       R PS +   ++  A    +
Sbjct: 6   GARVRAIRQSRGWSQQELAMRAGVSTPHISSIERD-----KRRPSLDYAKRLADALGVPL 60

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             L D   +      +                      +   
Sbjct: 61  QVLCDPEMTYEPKRMRNSVYELPTPLQHFVLNEESFPYLEAA 102


>gi|1174332|emb|CAA64677.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens]
          Length = 182

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  RHN++   LAR+AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         R   
Sbjct: 59 GLAEFFAFEPETSRKAF 75


>gi|302559931|ref|ZP_07312273.1| PbsX family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477549|gb|EFL40642.1| PbsX family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 165

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 42/166 (25%), Gaps = 9/166 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 7   MASLNVGNLGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   +   L           ++ E E   +              +      + +   
Sbjct: 62  VAKALRISAETLYVRAGILDAERDRDEVETRAVVLADPTLTERQKQVLL---QIYESFRK 118

Query: 121 PEIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQV 165
               +      A              S  P  R  D    +     
Sbjct: 119 ENGFAGAEDGQATPGGAPAPGAVDAPSAEPRPRVVDGSDTDPRRTA 164


>gi|90592580|ref|YP_529840.1| putative CI-like repressor [Lactobacillus phage KC5a]
 gi|89891909|gb|ABD78782.1| putative CI-like repressor [Lactobacillus phage KC5a]
          Length = 74

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          +  +     LT + LA++ G+   + ++ +R     + ++   +++ K+     + I 
Sbjct: 5  LKSLRVGAGLTQAELAKRLGVTNVTVSRWERGETIPKPKY--IKAMAKLFNIKGQDIF 60


>gi|91778751|ref|YP_553959.1| XRE family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691411|gb|ABE34609.1| transcriptional regulator, XRE family [Burkholderia xenovorans
           LB400]
          Length = 190

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 44/161 (27%), Gaps = 20/161 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +  +    N +   LAR +G+   + ++ +   +      P+   + K+  A   
Sbjct: 14  RIAQRLRALRAERNWSLDDLARLSGVSRATLSRLENAAV-----SPTASVLGKLCVAYGL 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116
            + +L+ +   D      +  +                       G         G +  
Sbjct: 69  PMSRLMHMVEEDFAPLVPRAAQPLWTDASVGFRRRSVSPPARALSGEALECELDAGVRIT 128

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
               P     H+ I          +          + GD L
Sbjct: 129 YDASPRPGLEHHLILLEGE----LRISVDGQSHDLQPGDCL 165


>gi|26989603|ref|NP_745028.1| XRE family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148548020|ref|YP_001268122.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|167033897|ref|YP_001669128.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|325276264|ref|ZP_08142055.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|24984484|gb|AAN68492.1|AE016481_8 transcriptional regulator, putative [Pseudomonas putida KT2440]
 gi|148512078|gb|ABQ78938.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
 gi|166860385|gb|ABY98792.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
 gi|298682210|gb|ADI95276.1| XRE family transcriptional regulator [Pseudomonas putida]
 gi|313499097|gb|ADR60463.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1]
 gi|324098604|gb|EGB96659.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 181

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 23/193 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + ER+NL+   LAR++GL  ++ ++ ++  +      PS  S+ K+L     ++
Sbjct: 4   GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRV-----SPSVSSLKKLLEGIPMSL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +                +E  +         G     +   G                 
Sbjct: 59  AEFFSFDE-------PVREERYVFRGGEQPDLGRNGLRMLLVGASVEG----RQMRMLRE 107

Query: 130 IYAIQTQDTRHKTQDTSMLPLY--RKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLI 186
           +YA                     R    L ++  + V   GD   I             
Sbjct: 108 LYAPGADSGEPIVHAEGEECGLVTRGTVELWVDGQVSVLNSGDGYYIPTTLPHS----FK 163

Query: 187 SRRGRSIDLMSLN 199
           +      +++S N
Sbjct: 164 NIGPDEAEIISAN 176


>gi|260855310|ref|YP_003229201.1| putative phage repressor CI [Escherichia coli O26:H11 str. 11368]
 gi|260868064|ref|YP_003234466.1| putative phage repressor protein CI [Escherichia coli O111:H-
          str. 11128]
 gi|293405073|ref|ZP_06649065.1| transcriptional repressor DicA [Escherichia coli FVEC1412]
 gi|298380719|ref|ZP_06990318.1| transcriptional repressor DicA [Escherichia coli FVEC1302]
 gi|331652950|ref|ZP_08353955.1| HTH-type transcriptional regulator DicA (Repressor protein of
          divisioninhibition protein dicA) [Escherichia coli
          M718]
 gi|331683077|ref|ZP_08383678.1| HTH-type transcriptional regulator DicA (Repressor protein of
          divisioninhibition protein dicA) [Escherichia coli
          H299]
 gi|257753959|dbj|BAI25461.1| predicted phage repressor CI [Escherichia coli O26:H11 str.
          11368]
 gi|257764420|dbj|BAI35915.1| predicted phage repressor protein CI [Escherichia coli O111:H-
          str. 11128]
 gi|291427281|gb|EFF00308.1| transcriptional repressor DicA [Escherichia coli FVEC1412]
 gi|298278161|gb|EFI19675.1| transcriptional repressor DicA [Escherichia coli FVEC1302]
 gi|320646852|gb|EFX15716.1| transcriptional repressor DicA [Escherichia coli O157:H- str.
          493-89]
 gi|320663403|gb|EFX30700.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. USDA
          5905]
 gi|331049048|gb|EGI21120.1| HTH-type transcriptional regulator DicA (Repressor protein of
          divisioninhibition protein dicA) [Escherichia coli
          M718]
 gi|331079292|gb|EGI50489.1| HTH-type transcriptional regulator DicA (Repressor protein of
          divisioninhibition protein dicA) [Escherichia coli
          H299]
          Length = 135

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + K + + I    ++  L+ +GL++ AG+  +S +  +          P  +++ ++  
Sbjct: 1  MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHT-----APRGQNLHRLAE 55

Query: 64 ATNETICQLLDLPFSDGRTTE 84
              +   +L           
Sbjct: 56 VLQCSPTWILFGDEDKTPAPP 76


>gi|210612788|ref|ZP_03289482.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787]
 gi|314950371|ref|ZP_07853647.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|317501730|ref|ZP_07959917.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|319937809|ref|ZP_08012211.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1]
 gi|210151402|gb|EEA82410.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787]
 gi|313643322|gb|EFS07902.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|316896852|gb|EFV18936.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|319807039|gb|EFW03655.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1]
          Length = 223

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA K G++  S +K +R        +P+ +++ KI+     T
Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65

Query: 69 ICQLLDLPFSDGRTTEK 85
            +LL   +     TE 
Sbjct: 66 PNELLSGEWKYIDHTEP 82


>gi|163784885|ref|ZP_02179654.1| hypothetical protein HG1285_00035 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879846|gb|EDP73581.1| hypothetical protein HG1285_00035 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 128

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          I  + ++  LT    A+  G+  T+ N+ +    E   R  + E++ K+
Sbjct: 6  IRELRKKLGLTQEEFAQLLGVGFTTVNRWENGKSE--PRGQALEALEKL 52


>gi|218290563|ref|ZP_03494672.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218239466|gb|EED06662.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 205

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 3/87 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + +  + E+  ++   LA   G+  +S    +    +   R P  E + KI      T  
Sbjct: 5  DRLKTLREQRGISQERLAEILGIPRSSIAHYESPEND---RLPRPERLKKIADFFGVTTD 61

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           L+               +   +    
Sbjct: 62 YLIGRTNDPHGHAIVNFADSEPIVTAE 88


>gi|291521013|emb|CBK79306.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 345

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I +  +   +T   +A + G+   + NK +    +     P  E +  I    + 
Sbjct: 2  DIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSK-----PDIELLAPIARLLDI 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          ++  LL    +   T  ++        F  
Sbjct: 57 SLDTLLSFHENLSDTEIEEIIRKMDRMFSE 86


>gi|330825988|ref|YP_004389291.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329311360|gb|AEB85775.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 117

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 1  MTSFSH------KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          M    H      +++   I  + +    T + LA + G++P + ++ +R         PS
Sbjct: 1  MVKKKHPGKPLAQRLGTQIATLRKTKEWTQADLAERIGVEPETISRVERGATT-----PS 55

Query: 55 TESIFKILAATNETICQ 71
           +++ KI       I +
Sbjct: 56 LQTLEKISHCLRVRIGE 72


>gi|289769674|ref|ZP_06529052.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289699873|gb|EFD67302.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 208

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 7/139 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MTS         +  + +   LT + LA   G+  ++ ++ +    E   R     +   
Sbjct: 18  MTSL-----GARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAH 72

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L        +  D        T   +  +PL   P  G   +      P   +      
Sbjct: 73  RLPLDELVGSRTGDPRVHPRPFTRHGQTWVPLTRNPNDGLHAYKQILPAPATPRTEWTPR 132

Query: 121 PE--IRSPHNGIYAIQTQD 137
           PE      H  +Y +  + 
Sbjct: 133 PEQGSHEGHEWLYVLSGRL 151


>gi|134298752|ref|YP_001112248.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051452|gb|ABO49423.1| putative transcriptional regulator, XRE family [Desulfotomaculum
          reducens MI-1]
          Length = 218

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I  +  +  L+ + L+R++G+  +S +  +        R P+ + I +I +    
Sbjct: 2  DIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQ-----RQPTFDVIERICSGLGL 56

Query: 68 TICQLLDLPFSDGR 81
          ++ +  +  F    
Sbjct: 57 SVAEFFNEGFMPCP 70


>gi|311111466|ref|ZP_07712863.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus gasseri MV-22]
 gi|311066620|gb|EFQ46960.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus gasseri MV-22]
          Length = 116

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  +   H L+ + L++   +   +  K +    E     PS+ ++ K+    + +
Sbjct: 2   IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAE-----PSSGALAKLAEYFDVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
              LL    +    +   EK +  L    +       
Sbjct: 57  ADYLLGSDKTSEPKSVDLEKTLSFLAMVDALCQMKTW 93


>gi|283780906|ref|YP_003371661.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068]
 gi|283439359|gb|ADB17801.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068]
          Length = 183

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 13/165 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I  M     LT   LA K G+     +K + F +      PS  ++ KI  A   
Sbjct: 5   QLSQRIREMRTSAGLTLEELAEKTGMTRGVISKIENFRVT-----PSLPTLAKIAEAFGV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +   LL       +    +++E   +    S    F  +           +   +     
Sbjct: 60  STADLLAGLDQRPQIVVVRKEERQEITRDGSAIRYFALAHKRAIKLMEPMLLEIQPGKGR 119

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           +   A + ++       T              + + ++  GD + 
Sbjct: 120 DEKLAHEGEEFVMVVDGTIEYE--------YGDESYRLEPGDCIY 156


>gi|86157573|ref|YP_464358.1| XRE family transcriptional regulator [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197121618|ref|YP_002133569.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220916382|ref|YP_002491686.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85774084|gb|ABC80921.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196171467|gb|ACG72440.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
 gi|219954236|gb|ACL64620.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 69

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +  +    + R+  + NL+   LA K G+  +  +  +R       R P  E+I K
Sbjct: 1  MDLLT--RFAGNVRRLRSKKNLSQKALADKVGISVSYVSMLERGQ-----RSPPLETIEK 53

Query: 61 ILAATNETI 69
          +  A     
Sbjct: 54 MAKALGVPP 62


>gi|291549706|emb|CBL25968.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 345

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I +  +   +T   +A + G+   + NK +    +     P  E +  I    + 
Sbjct: 2  DIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSK-----PDIELLAPIARLLDI 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          ++  LL        T  ++        F  
Sbjct: 57 SLDTLLSFHEKLSDTEIEEIIRKMDRMFSE 86


>gi|21223122|ref|NP_628901.1| hypothetical protein SCO4743 [Streptomyces coelicolor A3(2)]
 gi|3449255|emb|CAA20399.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 201

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 7/139 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MTS         +  + +   LT + LA   G+  ++ ++ +    E   R     +   
Sbjct: 11  MTSL-----GARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAH 65

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L        +  D        T   +  +PL   P  G   +      P   +      
Sbjct: 66  RLPLDELVGSRTGDPRVHPRPFTRHGQTWVPLTRNPNDGLHAYKQILPAPATPRTEWTPR 125

Query: 121 PE--IRSPHNGIYAIQTQD 137
           PE      H  +Y +  + 
Sbjct: 126 PEQGSHEGHEWLYVLSGRL 144


>gi|209918706|ref|YP_002292790.1| hypothetical protein ECSE_1515 [Escherichia coli SE11]
 gi|209911965|dbj|BAG77039.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|324021052|gb|EGB90271.1| helix-turn-helix protein [Escherichia coli MS 117-3]
          Length = 178

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P S   +    +++  ++                    +G    +    +    H
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124


>gi|170680755|ref|YP_001743794.1| DNA-binding protein [Escherichia coli SMS-3-5]
 gi|170518473|gb|ACB16651.1| DNA-binding protein [Escherichia coli SMS-3-5]
          Length = 178

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P S   +    +++  ++                    +G    +    +    H
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124


>gi|71736787|ref|YP_274675.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557340|gb|AAZ36551.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 203

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 55/211 (26%), Gaps = 43/211 (20%)

Query: 4   FSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
            SHK I      +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K
Sbjct: 16  LSHKAIMDTGARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKK 70

Query: 61  ILAATNETICQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGV 108
           +L     T+          G+                  + + +    PS    F     
Sbjct: 71  LLEGIPMTLADFFTFDQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQY 130

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
            P     ++   P + S       +              +                   G
Sbjct: 131 AP---GADSGEEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PG 171

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
           D                 +      +++S N
Sbjct: 172 DGYYFPTTLPH----RFRNIGQDEAEIISSN 198


>gi|16129393|ref|NP_415951.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108277|ref|AP_002057.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157157044|ref|YP_001462706.1| DNA-binding protein [Escherichia coli E24377A]
 gi|157160911|ref|YP_001458229.1| DNA-binding protein [Escherichia coli HS]
 gi|170020236|ref|YP_001725190.1| XRE family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|170081108|ref|YP_001730428.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|191164983|ref|ZP_03026827.1| DNA-binding protein [Escherichia coli B7A]
 gi|193066983|ref|ZP_03047952.1| DNA-binding protein [Escherichia coli E110019]
 gi|194436585|ref|ZP_03068686.1| DNA-binding protein [Escherichia coli 101-1]
 gi|238900660|ref|YP_002926456.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|253773591|ref|YP_003036422.1| XRE family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161493|ref|YP_003044601.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|256022888|ref|ZP_05436753.1| predicted DNA-binding transcriptional regulator [Escherichia sp.
           4_1_40B]
 gi|260855159|ref|YP_003229050.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|260867878|ref|YP_003234280.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|293433816|ref|ZP_06662244.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088]
 gi|297521909|ref|ZP_06940295.1| putative DNA-binding transcriptional regulator [Escherichia coli
           OP50]
 gi|300921799|ref|ZP_07137960.1| helix-turn-helix protein [Escherichia coli MS 182-1]
 gi|300928985|ref|ZP_07144486.1| helix-turn-helix protein [Escherichia coli MS 187-1]
 gi|300948113|ref|ZP_07162247.1| helix-turn-helix protein [Escherichia coli MS 116-1]
 gi|300958230|ref|ZP_07170381.1| helix-turn-helix protein [Escherichia coli MS 175-1]
 gi|301020147|ref|ZP_07184274.1| helix-turn-helix protein [Escherichia coli MS 196-1]
 gi|301326006|ref|ZP_07219420.1| helix-turn-helix protein [Escherichia coli MS 78-1]
 gi|301645375|ref|ZP_07245319.1| helix-turn-helix protein [Escherichia coli MS 146-1]
 gi|307138086|ref|ZP_07497442.1| putative DNA-binding transcriptional regulator [Escherichia coli
           H736]
 gi|307309783|ref|ZP_07589433.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|309794168|ref|ZP_07688592.1| helix-turn-helix protein [Escherichia coli MS 145-7]
 gi|312971601|ref|ZP_07785776.1| helix-turn-helix family protein [Escherichia coli 1827-70]
 gi|331642010|ref|ZP_08343145.1| putative oxidoreductase/putative repressor [Escherichia coli H736]
 gi|2829660|sp|P77626|YDCN_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
           ydcN
 gi|1742340|dbj|BAA15062.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|1787704|gb|AAC74516.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157066591|gb|ABV05846.1| DNA-binding protein [Escherichia coli HS]
 gi|157079074|gb|ABV18782.1| DNA-binding protein [Escherichia coli E24377A]
 gi|169755164|gb|ACA77863.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739]
 gi|169888943|gb|ACB02650.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|190904755|gb|EDV64460.1| DNA-binding protein [Escherichia coli B7A]
 gi|192959573|gb|EDV90007.1| DNA-binding protein [Escherichia coli E110019]
 gi|194424617|gb|EDX40603.1| DNA-binding protein [Escherichia coli 101-1]
 gi|238862307|gb|ACR64305.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|242377187|emb|CAQ31919.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|253324635|gb|ACT29237.1| transcriptional regulator, XRE family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973394|gb|ACT39065.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253977605|gb|ACT43275.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|257753808|dbj|BAI25310.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|257764234|dbj|BAI35729.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|260449440|gb|ACX39862.1| transcriptional regulator, XRE family [Escherichia coli DH1]
 gi|291324635|gb|EFE64057.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088]
 gi|299881904|gb|EFI90115.1| helix-turn-helix protein [Escherichia coli MS 196-1]
 gi|300315108|gb|EFJ64892.1| helix-turn-helix protein [Escherichia coli MS 175-1]
 gi|300421824|gb|EFK05135.1| helix-turn-helix protein [Escherichia coli MS 182-1]
 gi|300452356|gb|EFK15976.1| helix-turn-helix protein [Escherichia coli MS 116-1]
 gi|300463050|gb|EFK26543.1| helix-turn-helix protein [Escherichia coli MS 187-1]
 gi|300847223|gb|EFK74983.1| helix-turn-helix protein [Escherichia coli MS 78-1]
 gi|301076329|gb|EFK91135.1| helix-turn-helix protein [Escherichia coli MS 146-1]
 gi|306909501|gb|EFN39995.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|308122073|gb|EFO59335.1| helix-turn-helix protein [Escherichia coli MS 145-7]
 gi|310336198|gb|EFQ01398.1| helix-turn-helix family protein [Escherichia coli 1827-70]
 gi|315060712|gb|ADT75039.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315136074|dbj|BAJ43233.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|315619613|gb|EFV00138.1| helix-turn-helix family protein [Escherichia coli 3431]
 gi|320187371|gb|EFW62064.1| Transcriptional regulator yidN, Cro/CI family [Shigella flexneri
           CDC 796-83]
 gi|320199440|gb|EFW74031.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
           EC4100B]
 gi|323157392|gb|EFZ43506.1| helix-turn-helix family protein [Escherichia coli EPECa14]
 gi|323178085|gb|EFZ63664.1| helix-turn-helix family protein [Escherichia coli 1180]
 gi|323185431|gb|EFZ70792.1| helix-turn-helix family protein [Escherichia coli 1357]
 gi|323378722|gb|ADX50990.1| transcriptional regulator, XRE family [Escherichia coli KO11]
 gi|323942192|gb|EGB38365.1| helix-turn-helix protein [Escherichia coli E482]
 gi|323947787|gb|EGB43789.1| helix-turn-helix protein [Escherichia coli H120]
 gi|323962367|gb|EGB57953.1| helix-turn-helix protein [Escherichia coli H489]
 gi|323973651|gb|EGB68830.1| helix-turn-helix protein [Escherichia coli TA007]
 gi|324117665|gb|EGC11569.1| helix-turn-helix protein [Escherichia coli E1167]
 gi|331038808|gb|EGI11028.1| putative oxidoreductase/putative repressor [Escherichia coli H736]
 gi|332343099|gb|AEE56433.1| helix-turn-helix family protein YdcN [Escherichia coli UMNK88]
          Length = 178

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P S   +    +++  ++                    +G    +    +    H
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEH 124


>gi|160896156|ref|YP_001561738.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361740|gb|ABX33353.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 104

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I        +T   LA  AG+  ++ ++ +     G  R    +++ ++  A   T
Sbjct: 4  IGERIRARRAELGMTQGRLAEAAGITASAVSQIE----SGAIRTLKNDTLARVALALQTT 59

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
            +L      D       E+ 
Sbjct: 60 ALELTAGLEDDNAPLPVDEQR 80


>gi|310827449|ref|YP_003959806.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612]
 gi|308739183|gb|ADO36843.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612]
          Length = 67

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +   I E I    E  NL  S LA KAG+   + N  +        R P   +I KI 
Sbjct: 1  MMT---IGEIIRTAREEKNLNQSQLAAKAGISQATVNYLETG-----KRNPGFTTIVKIA 52

Query: 63 AAT 65
             
Sbjct: 53 KVL 55


>gi|261819878|ref|YP_003257984.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261603891|gb|ACX86377.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 103

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+  + ++I E++     R   +   L+ ++G+  +  +K +  G++   R  S  ++ +
Sbjct: 1  MSYVT-EQILESLREARARKGFSQRELSARSGVPQSHISKIESGGVD--LRVSSLIALAR 57

Query: 61 ILA 63
          +L 
Sbjct: 58 VLD 60


>gi|209550040|ref|YP_002281957.1| peptidase S24 and S26 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535796|gb|ACI55731.1| peptidase S24 and S26 domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 244

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 69/233 (29%), Gaps = 29/233 (12%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + + R  E     +P+  A      P   NK+     E  NR  S ++  +         
Sbjct: 6   DRLKRAREAAGFQSPTDAANAF---PRDINKNTLISNENGNRAISKKAAERYGELFGVKA 62

Query: 70  CQL-LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             +       +G      E  +  L        G  ++G F   ++++     E+  P +
Sbjct: 63  GWILFGDNAEEGAAPVVSELTLNRLGMVAGRVAGVVEAGTFREVDEFDQSDPVEVMLPRD 122

Query: 129 GIYAIQTQDTRHKTQDTSMLP----LYRKGDILI------LNSAIQVNCGDRLLIKPRTG 178
             +    Q         SM          GD L+      +   +++  G  ++++    
Sbjct: 123 EKFPNARQLV-FDCSGDSMNDLRPRPIFPGDRLVCLSYEDIEHQVELRSGMVVVVERTRD 181

Query: 179 -----DIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMS-------DIEWIARI 218
                +   K L     R      S N  +    ++          ++ IA +
Sbjct: 182 GGHFREWSVKQLELFPDRAEFHPRSTNPKHKPIVIQRDHEADDGVSVQVIALV 234


>gi|254465332|ref|ZP_05078743.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
           Y4I]
 gi|206686240|gb|EDZ46722.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
           Y4I]
          Length = 287

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++  + ++R      L+ S LAR  G+D ++ ++      +   R P+   +     A  
Sbjct: 12  EQFRQRLNRALSESGLSQSALARAVGVDRSTISQLL---TDEGARLPNAHVVGACAGALG 68

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            +   LL L        E     + L   P +               
Sbjct: 69  VSADWLLSLSDRPESAAELLASSLSLSEAPRALVDERIFDWHQEAEG 115


>gi|160933713|ref|ZP_02081101.1| hypothetical protein CLOLEP_02574 [Clostridium leptum DSM 753]
 gi|156867590|gb|EDO60962.1| hypothetical protein CLOLEP_02574 [Clostridium leptum DSM 753]
          Length = 102

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I + I R+    N T   LA+K+GL  ++ +   R     + + PS +++ KI     
Sbjct: 2  KDILKEITRLRLERNWTEYELAKKSGLAQSTISSWYR-----KKQTPSIQTLDKICKGFG 56

Query: 67 ETICQLL 73
           T+ Q  
Sbjct: 57 ITLSQFF 63


>gi|307129154|ref|YP_003881170.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306526683|gb|ADM96613.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 195

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 48/146 (32%), Gaps = 17/146 (11%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           + +++   +  +      +   LA+ +G+   + ++ +R         P+   + ++ A 
Sbjct: 14  TDRRLAGRLAALRRERGWSLDELAQNSGISRATLSRLERMES-----SPTAALLGRLCAV 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLY-----------FPPSGSGGFFDSGVFPTGN 113
              T+  LL    +         ++   +             P +G       G  P G 
Sbjct: 69  YGCTMSCLLAEVETQLPQKLSAAQQPVWIDPETGFVRRSISPPSAGFRAEMIHGELPAGA 128

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTR 139
           + +    P +    + +Y ++ Q   
Sbjct: 129 RIDY-SAPPLAGLEHHLYVLEGQLVM 153


>gi|294495785|ref|YP_003542278.1| XRE family transcriptional regulator [Methanohalophilus mahii DSM
           5219]
 gi|292666784|gb|ADE36633.1| transcriptional regulator, XRE family [Methanohalophilus mahii DSM
           5219]
          Length = 185

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I +      LT SGLA++AG+      + +   ++     P   ++ KI AA +++  + 
Sbjct: 9   IKQQRIELGLTQSGLAKRAGVSQPLIARIEAGDVD-----PRLSTLRKIFAAFDQSEKEK 63

Query: 73  LDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           + +           ++++       +      S         P G+    +
Sbjct: 64  ICVRDIMHTLVVFVSSDESVDHAVSIMQEHGYSQVPVIDNGVPVGSISEDM 114


>gi|284006686|emb|CBA71947.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 133

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 6/105 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++ +      S LAR+ G+ P S     +  I      P  + + K+   T +T+ 
Sbjct: 9   KRLQQVLDELGWNQSELARRMGVKPQSVQGWLKNVI------PRMDKLKKLSEVTGKTVD 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                  ++      +   +                   P  +  
Sbjct: 63  WFFSDKLTNQENKSHEIFSMKKNTLTEKQKLILQLFESLPESDVD 107


>gi|193062540|ref|ZP_03043634.1| DNA-binding protein [Escherichia coli E22]
 gi|260843745|ref|YP_003221523.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|192931662|gb|EDV84262.1| DNA-binding protein [Escherichia coli E22]
 gi|257758892|dbj|BAI30389.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|323163586|gb|EFZ49411.1| helix-turn-helix family protein [Escherichia coli E128010]
          Length = 178

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 33/118 (27%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P     +    ++   ++                     G    +    +    H
Sbjct: 67  ISPPQPATPSVYDPQQHAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124


>gi|116629238|ref|YP_814410.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC
          33323]
 gi|116629298|ref|YP_814470.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC
          33323]
 gi|116094820|gb|ABJ59972.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
          33323]
 gi|116094880|gb|ABJ60032.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
          33323]
          Length = 74

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          +  +     LT + LA++ G+   + ++ +R     + ++   +++ K+     + I 
Sbjct: 5  LKSLRVGAGLTQTELAKRLGVTNVTVSRWERGEAIPKPKY--IKAMAKLFNIKGQDIF 60


>gi|311111418|ref|ZP_07712815.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri
          MV-22]
 gi|311111467|ref|ZP_07712864.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri
          MV-22]
 gi|311066572|gb|EFQ46912.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri
          MV-22]
 gi|311066621|gb|EFQ46961.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri
          MV-22]
          Length = 75

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          +  +     LT + LA++ G+   + ++ +R     + ++   +++ K+     + I 
Sbjct: 5  LKSLRVGAGLTQAELAKRLGVTNVTVSRWERGEAVPKPKY--IKAMAKLFNIKGQDIF 60


>gi|296133125|ref|YP_003640372.1| transcriptional regulator, XRE family [Thermincola sp. JR]
 gi|296031703|gb|ADG82471.1| transcriptional regulator, XRE family [Thermincola potens JR]
          Length = 89

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I   I R+     L+   LA K G   ++ ++ +          PS E + KI  A  
Sbjct: 28 NIKREIIRLRLEQGLSQKDLADKVGTKQSAISRLESGEYN-----PSVEFLTKIAHALG 81


>gi|260597879|ref|YP_003210450.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032]
 gi|260217056|emb|CBA30782.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032]
          Length = 191

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 47/170 (27%), Gaps = 23/170 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I E I    E    + S LA +AG+     +K +R         P+   + ++  A 
Sbjct: 9   NQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAL 63

Query: 66  NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             ++  L+     +         +   +  +   L       S    D          + 
Sbjct: 64  GLSMSTLIARAEMNEGRLLRFADQPVWRDPQSHYLRRHVSPKSDLPLDLVQVELPAGSD- 122

Query: 118 VGVPE---------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
           + +P          I      +   + +      +   +          I
Sbjct: 123 IPMPASAYAFARQLIWVQQGELVFREGETRHLMREGDCLELGPPNECHFI 172


>gi|332716117|ref|YP_004443583.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3]
 gi|325062802|gb|ADY66492.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3]
          Length = 182

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  RHN++   LAR+AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         R   
Sbjct: 59 GLAEFFAYEPETSRKAF 75


>gi|209551825|ref|YP_002283742.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537581|gb|ACI57516.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 189

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 5/132 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I   I ++     LT   LA  +G+     ++ +R         P+   + +
Sbjct: 1   MEEQLEQAIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I AA   ++               +++++                +    +      V  
Sbjct: 56  ICAALGLSLSAFFAEEGEQAAPLARRQEQQVWRDPETGYLRRSVSAPGTASDVDIVEVEF 115

Query: 121 PEIRSPHNGIYA 132
           P         +A
Sbjct: 116 PAGARVSFPPHA 127


>gi|325955461|ref|YP_004239121.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
           complex with UmuC [Weeksella virosa DSM 16922]
 gi|323438079|gb|ADX68543.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms
           complex with UmuC [Weeksella virosa DSM 16922]
          Length = 154

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 4/99 (4%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           E  S      +        +    SM P Y+  D+L+  S  Q+  GD  ++     D  
Sbjct: 47  ERISLDERFLSKPESTFLVRVGGLSMYPHYQMNDVLVNRSDYQLMHGDDAVVSINNSDFT 106

Query: 182 AKVLISRRGRSIDLMSLNCCYPV-DTVEMSDIEWIARIL 219
            K             +LN  +     ++  D+     ++
Sbjct: 107 LKR---WDANKKMFYALNPDFKDSLIIQPEDVVVCLGVV 142


>gi|256785782|ref|ZP_05524213.1| hypothetical protein SlivT_14926 [Streptomyces lividans TK24]
          Length = 202

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 7/139 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MTS         +  + +   LT + LA   G+  ++ ++ +    E   R     +   
Sbjct: 12  MTSL-----GARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAH 66

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L        +  D        T   +  +PL   P  G   +      P   +      
Sbjct: 67  RLPLDELVGSRTGDPRVHPRPFTRHGQTWVPLTRNPNDGLHAYKQILPAPATPRTEWTPR 126

Query: 121 PE--IRSPHNGIYAIQTQD 137
           PE      H  +Y +  + 
Sbjct: 127 PEQGSHEGHEWLYVLSGRL 145


>gi|295094125|emb|CBK83216.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1]
          Length = 242

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    ++  L     A K G+   + +K +R        +P  + +  I    +  
Sbjct: 4  IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKA-----YPDLDRLVCICEILDVQ 58

Query: 69 ICQLLDLPFSDGRTT 83
          + +L+     +    
Sbjct: 59 VGELIYGKGDEPEAP 73


>gi|227508605|ref|ZP_03938654.1| conserved hypothetical protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191937|gb|EEI72004.1| conserved hypothetical protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 184

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 40/159 (25%), Gaps = 12/159 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR-NRWPSTESIFKILAATN 66
           KI + +    E+ + + + LA K  +   S +K ++           +   +FKI     
Sbjct: 2   KIGKVLQVQREKRHWSQAELAEKLSISRQSISKWEQEVALPSFANVVAISDLFKISLDDL 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP----- 121
                 L    S         K +   +                  + WN V  P     
Sbjct: 62  IKGDDKLMDKLSRNDKMRPVTKILLWAFGFAISIYVLLQVLHIGVADVWNWVEFPLFVTF 121

Query: 122 ------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
                       N  ++  T           ++P     
Sbjct: 122 IALLFTINWRQLNRAFSKPTIILGIIVLTLFLVPEIYGF 160


>gi|255655594|ref|ZP_05401003.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296878842|ref|ZP_06902842.1| probable transcriptional regulator [Clostridium difficile NAP07]
 gi|296430114|gb|EFH15961.1| probable transcriptional regulator [Clostridium difficile NAP07]
          Length = 403

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KI + I  + +  NLT   LA+  G+   + +K +         +P  E +  +    
Sbjct: 2  QIKIGKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56

Query: 66 NET 68
          N +
Sbjct: 57 NVS 59


>gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 345

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I +  +    T   +A + G+   + NK +          P  E +  I    + 
Sbjct: 2  NIGNVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSN-----PDIELLAPIARLLHI 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          ++  LL    +       +  +     F  
Sbjct: 57 SLDTLLSFHENLTDVEITELIQEMDKMFSA 86


>gi|261366797|ref|ZP_05979680.1| toxin-antitoxin system, antitoxin component, Xre family
           [Subdoligranulum variabile DSM 15176]
 gi|282571333|gb|EFB76868.1| toxin-antitoxin system, antitoxin component, Xre family
           [Subdoligranulum variabile DSM 15176]
          Length = 117

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/104 (9%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + +  + E    +   +A+  G   +S N+ +          PS E   +     + 
Sbjct: 3   EVGKRLKALRESIGFSQVKMAQALGSTQSSINRYENGQS-----SPSVELFRRYADYFDV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           ++  +          T   + +                    P 
Sbjct: 58  SLDYIFARTDKPQGETYHFKPKAAPEREELRQFIEMCFDPQSPM 101


>gi|313897846|ref|ZP_07831387.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312957381|gb|EFR39008.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 223

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA K G++  S +K +R        +P+ +++ KI+     T
Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65

Query: 69 ICQLLDLPFSDGRTTEK 85
            +LL   +     TE 
Sbjct: 66 PNELLSGEWKYIDHTEP 82


>gi|257062849|ref|YP_003142521.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256790502|gb|ACV21172.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 459

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E +  +     L+   LA + GL   + +K +R         P T+++  +      
Sbjct: 4  EVAERLAELRRAKGLSQEELAHELGLSRQAVSKWERAES-----SPDTDNLIALAKLYGM 58

Query: 68 TICQLLD 74
          T+ +L+ 
Sbjct: 59 TLDELVH 65


>gi|52787332|ref|YP_093161.1| hypothetical protein BLi03647 [Bacillus licheniformis ATCC 14580]
 gi|52349834|gb|AAU42468.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 134

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M      +  E +  + E+ +L+ + LA  AG+   + ++ +     G    P   +I K
Sbjct: 1   MAMT---RFGERLKELREQRSLSVNQLAMYAGVSAAAISRIEN----GHRGVPKPATIRK 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           +  A      QL+D+         +++    +     +   G  D  +F   
Sbjct: 54  LAEALKMPYEQLMDIAGYMRADEIREQPRGYVTMQEIAAKHGVEDLWLFKPE 105


>gi|291530756|emb|CBK96341.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 302

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  +T   LA K G+   + +K +         +P  + + KI    + +I  L
Sbjct: 9   LQMLRKQSGITQEQLADKLGVTAQAVSKWENGS------YPDGDLLPKIADIFDVSIDNL 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                      ++    +  +          +       
Sbjct: 63  YGRGEERCSFEQQVLNHMRAIADSNQDFSAEWMKNYLNI 101


>gi|295702409|ref|YP_003595484.1| transcriptional regulator [Bacillus megaterium DSM 319]
 gi|294800068|gb|ADF37134.1| transcriptional regulator [Bacillus megaterium DSM 319]
          Length = 180

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 10/124 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I  +  +  LT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLS-----SPSLETFFSILEVLGC 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              +  ++     +   ++E                +        +    +    +    
Sbjct: 57  EPKEFFEIDTHVQKVVYREEDYTSYCEDEKG-----YHIQWLVHESNEKEMEPIRLILHE 111

Query: 128 NGIY 131
            G +
Sbjct: 112 KGAF 115


>gi|52080997|ref|YP_079788.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52004208|gb|AAU24150.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
          Length = 111

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 2   IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           +  LLD         +   +   L+    +  
Sbjct: 58  VHTLLDEKDETEYDGQLDSEWENLVRDAMASG 89


>gi|254975202|ref|ZP_05271674.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255092592|ref|ZP_05322070.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255314329|ref|ZP_05355912.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255517008|ref|ZP_05384684.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255650110|ref|ZP_05397012.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260683237|ref|YP_003214522.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686833|ref|YP_003217966.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|260209400|emb|CBA62866.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212849|emb|CBE04052.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 404

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KI + I R+ +  NLT   LA+  G+   + +K +         +P  E +  +    
Sbjct: 2  QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56

Query: 66 NET 68
          N +
Sbjct: 57 NVS 59


>gi|317505065|ref|ZP_07963012.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663843|gb|EFV03563.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 245

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 17/226 (7%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M     +K  I + I     +  ++     +++G               G+N   S E+I
Sbjct: 25  MQENKQEKSLIKQNISLYLAKKGVSDYVYYKESGTTRGIL---------GQNNGISEENI 75

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + LA   +   + L     +    E+ E     +       G  +    F  G      
Sbjct: 76  SRFLAYAPDVNHEWLLTGKGNMLKEEETEDVSTPVVSYDPKVGQPYYDVDFLGGFSEIYN 135

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRT 177
               +   +  +               SM P    GDI+ L    I       +      
Sbjct: 136 SQVSLPDHNIIVPGFDRAHLWCNVTGHSMEPQISHGDIIALRPCTIDDIQYGEMYAVVLD 195

Query: 178 GDIVAKVLISRRGRSI-DLMSLNCCYPVDTVEMSDI----EWIARI 218
                K++     +     + +N  +     E++ I    E I  I
Sbjct: 196 TIRTIKIIRRGSSKKFLRYVPINPNFDEQEFEVNRIINVFEVIGSI 241


>gi|317132318|ref|YP_004091632.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
 gi|315470297|gb|ADU26901.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
          Length = 373

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I  + +   +T   LA   G+   + +K +         +P    + ++ A  N 
Sbjct: 5  QIGANIASLRKEKGVTQEELADYLGISKPAVSKWESGQS-----YPDILLLPRLAAYFNR 59

Query: 68 TICQLLDLPFSDGRTT 83
          T+ +LL          
Sbjct: 60 TVDELLGYAAQMTVEE 75


>gi|57641274|ref|YP_183752.1| transcription regulator [Thermococcus kodakarensis KOD1]
 gi|57159598|dbj|BAD85528.1| predicted transcription regulator, containing DNA-binding HTH
          domain [Thermococcus kodakarensis KOD1]
          Length = 65

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E   LT   LA+  G+   +    ++   +     PS +  FKI       I 
Sbjct: 3  NRLRELREERGLTQEELAKALGVTRQTIIAIEKGKYD-----PSLKLAFKIARFFGLNIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DIFIYEG 64


>gi|66045941|ref|YP_235782.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. syringae B728a]
 gi|63256648|gb|AAY37744.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a]
          Length = 203

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 54/211 (25%), Gaps = 43/211 (20%)

Query: 4   FSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
            SHK        +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K
Sbjct: 16  LSHKATMDTGARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKK 70

Query: 61  ILAATNETICQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGV 108
           +L     T+          G+                  + + +    PS    F     
Sbjct: 71  LLEGIPMTLADFFTFDQPPGQDQYVFRAGDQPDLGRNGARLLLVGATLPSRQMRFLREQY 130

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
            P     ++   P + S       +              +                   G
Sbjct: 131 AP---GADSGDEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PG 171

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
           D                 +      +++S N
Sbjct: 172 DGYYFPTTLPH----RFRNIGHDEAEIISAN 198


>gi|306520117|ref|ZP_07406464.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
          Length = 405

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KI + I R+ +  NLT   LA+  G+   + +K +         +P  E +  +    
Sbjct: 2  QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56

Query: 66 NET 68
          N +
Sbjct: 57 NVS 59


>gi|146305038|ref|YP_001192354.1| XRE family transcriptional regulator [Metallosphaera sedula DSM
           5348]
 gi|145703288|gb|ABP96430.1| transcriptional regulator, XRE family [Metallosphaera sedula DSM
           5348]
          Length = 184

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 11/112 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I +M E   LT + LAR+ G+  +   K ++  I+     P    + KIL      I   
Sbjct: 8   IRKMREMAGLTQTELARRVGVSQSLIAKIEKGKID-----PKLSVVRKILDELTPLIEVP 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------TGNKWNTV 118
                         + +  +                         G  ++ V
Sbjct: 63  EVAVNLMHSPVISAKMDDRVKDIVELMESNNISQVPVVNSSGKLMGMIYDYV 114


>gi|146311755|ref|YP_001176829.1| XRE family transcriptional regulator [Enterobacter sp. 638]
 gi|145318631|gb|ABP60778.1| transcriptional regulator, XRE family [Enterobacter sp. 638]
          Length = 191

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 8/143 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    + +I   I    E    + S LA +AG+     +K +R         P+   + +
Sbjct: 4   MPDDMNHRISARIRLERESRGWSLSELAERAGVSRAMIHKIERSES-----SPTATLLAR 58

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   ++  L+           +     P+   P S       S           V +
Sbjct: 59  LSGAFGISMSTLIARAEMQEGKLLR-FANQPVWRDPQSQYLRRHVSPRTDLPIDLVQVEL 117

Query: 121 PEIRSPHNGI--YAIQTQDTRHK 141
           P           YA+  Q    +
Sbjct: 118 PARSDVPMPASSYALARQLIWLQ 140


>gi|317484534|ref|ZP_07943442.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924195|gb|EFV45373.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 184

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 49/166 (29%), Gaps = 20/166 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + R+ E   L+   +A+ +G+  +   + +R         P+  +++KI      +
Sbjct: 8   VAENLKRLREERKLSLDAVAKCSGVSKSMLGQIERGVTN-----PTISTLWKIANGLKIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF----------DSGVFPTGNKWNTV 118
              L+  P +D     +      +       +   F           +     G + +  
Sbjct: 63  FTSLMMRPETDVEVVPRSAITPFVETDGKYRNYPVFPFDSSRGFEMYAIELDPGVRLDAE 122

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
             PE       +++                     GD +   +  +
Sbjct: 123 PHPEGTQEFITVFSG-----ALTVLLDGERWGIADGDSIRFKADRK 163


>gi|270340204|ref|ZP_06007424.2| transcriptional regulator [Prevotella bergensis DSM 17361]
 gi|270332301|gb|EFA43087.1| transcriptional regulator [Prevotella bergensis DSM 17361]
          Length = 238

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 32/238 (13%)

Query: 3   SFSHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE-- 56
             + ++    I + I + +    ++      K G+   +   +     +   ++ +T   
Sbjct: 1   MQTKEQKISPIKQRILQFSATLGVSKRNFYSKIGVSRGTLESNTGITEDIMAKFIATYPE 60

Query: 57  -SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---- 111
            +I  ++    + +  + + P  + +   +                 F  S         
Sbjct: 61  VNISWLITGEGDMLKSIWEEPQIEVKPIHQPRSTEKKEETQVVYLYDFEASAGLRALFDN 120

Query: 112 --GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-- 167
              N  +T+ +P           +   D        SM PL + GDI++           
Sbjct: 121 NRQNIIDTIKIPN----------LPKCDGAIHIVGDSMYPLLKSGDIILYRQMPLDINNL 170

Query: 168 --GDRL---LIKPRTGDIVAKVLISRRGRS--IDLMSLNCCYPVDTVEMSDIEWIARI 218
             G+             IV K +         I L S N  +    ++   I  +A +
Sbjct: 171 LYGEMYLLSYDIDGDDYIVVKYIRKSEKGEPFITLGSENPAHAPRDIDFRRITALALV 228


>gi|167767648|ref|ZP_02439701.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1]
 gi|319938591|ref|ZP_08012978.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1]
 gi|167710665|gb|EDS21244.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1]
 gi|291560782|emb|CBL39582.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [butyrate-producing bacterium SSC/2]
 gi|319806227|gb|EFW02919.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1]
          Length = 223

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA K G++  S +K +R        +P+ +++ KI+     T
Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65

Query: 69 ICQLLDLPFSDGRTTEK 85
            +LL   +     TE 
Sbjct: 66 PNELLSGEWKYIDHTEP 82


>gi|301017870|ref|ZP_07182512.1| helix-turn-helix protein [Escherichia coli MS 69-1]
 gi|300399967|gb|EFJ83505.1| helix-turn-helix protein [Escherichia coli MS 69-1]
          Length = 178

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHIYRNGG 163


>gi|291526868|emb|CBK92454.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 190

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + KKI   +  + +   +T    A K  +   + ++ +          P    +  I  
Sbjct: 1  MNQKKIGSFLKELRKEMGITQEEFAEKLDVSSRTISRWETGAN-----MPDISLLVNIAE 55

Query: 64 ATNETICQ 71
            N +I +
Sbjct: 56 IFNVSIPE 63


>gi|57235098|ref|YP_182252.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
 gi|57225546|gb|AAW40603.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
          Length = 72

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 3  SFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
            + K I     E I  + ++  ++   LA +AG+  T     +R       R PS ++I
Sbjct: 1  MMTEKTIEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGE-----RNPSLKNI 55

Query: 59 FKILAAT 65
          + I  A 
Sbjct: 56 YAISRAL 62


>gi|269121461|ref|YP_003309638.1| phage repressor [Sebaldella termitidis ATCC 33386]
 gi|268615339|gb|ACZ09707.1| putative phage repressor [Sebaldella termitidis ATCC 33386]
          Length = 220

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 60/210 (28%), Gaps = 14/210 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +    +  + T   LA    +   S +           R P    I    +  N +  
Sbjct: 10  DYLKNFIKERDYTLESLAEDLNVSFGSLSHYTTG-----KRIPKDVFIDNFASYFNLSKE 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           Q  ++            K+   L+           S     G       + +        
Sbjct: 65  QKNEIKALIELDRSPFLKDRIKLHNKKETPRLTVFSLNT-AGEGLLQ-ELSKEVFVLPAD 122

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAKVLI 186
             I       + +   + P    GD +++ S      +   G  ++      +  AK + 
Sbjct: 123 LEIYEDSFIVEIRGDKLAPEILNGDRILVESFNFNNWRELDGKIVV-IDIKNEKFAKRVG 181

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
              G +I L SL   Y  + +   +I+++ 
Sbjct: 182 FYDGEAI-LKSL-TGYEKNILVDENIKYVG 209


>gi|87119803|ref|ZP_01075700.1| transcriptional regulator, putative [Marinomonas sp. MED121]
 gi|86165279|gb|EAQ66547.1| transcriptional regulator, putative [Marinomonas sp. MED121]
          Length = 184

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E +  +     L+   LA++AG+  ++ +  +   +      PS  S+ KILA    
Sbjct: 2  DIGERLLTIRRNKGLSQRDLAKRAGVTNSAISMIETNRV-----SPSVSSLEKILAGMGM 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          ++ +   +   D    +   +   LL   
Sbjct: 57 SLTEFFSIKQKDKLDYQVVYRSDELLDVS 85


>gi|291449844|ref|ZP_06589234.1| regulatory protein [Streptomyces albus J1074]
 gi|291352793|gb|EFE79695.1| regulatory protein [Streptomyces albus J1074]
          Length = 202

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 8/135 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL---AAT 65
           +   +  + +    T +GL+   G+  ++ ++ +        R PS E +  I       
Sbjct: 18  VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGN-----RRPSLELLLPIAAAHDVP 72

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            + +           R    ++    ++       G      V   G   + V       
Sbjct: 73  LDRLVGAPPAGDPRVRLEPIEQGNRTVIPLSRRPGGLQAFKWVLRPGEGCDPVEEQRTHE 132

Query: 126 PHNGIYAIQTQDTRH 140
            +  +Y I  +    
Sbjct: 133 GYEWLYVISGRLRLL 147


>gi|167031598|ref|YP_001666829.1| transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858086|gb|ABY96493.1| transcriptional regulator [Pseudomonas putida GB-1]
          Length = 233

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 55/230 (23%), Gaps = 26/230 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  +     LTPS  A +  + P   N   +       R      + ++        
Sbjct: 5   GDRLKALLHECGLTPSDFAAQRSVTPQHVNNWFK-------RGVPLARLDELADLFCVHR 57

Query: 70  CQLLDLPFSDGRTTE-----------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             L                            + + +        +       +      +
Sbjct: 58  RWLRTGEGPKHPNPILRNGPPKPALANPPTPLSVRHGRVLNVPYYEMHNSLLSPVAGKNL 117

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +P       G+ A             +MLPL      L ++ ++              G
Sbjct: 118 RLPAKALKGLGVQA--GNAICLAMPAGNMLPLIPLEATLAIDLSMTRVVDGETYALLHNG 175

Query: 179 DIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222
            +    L      ++ L S     Y V+    +      +E +  +   S
Sbjct: 176 MLRVNSLSLGLHDTLYLHSHDRRNYAVERYTPAQRQAQGLEILGWVFHWS 225


>gi|223983505|ref|ZP_03633690.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM
           12042]
 gi|223964500|gb|EEF68827.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM
           12042]
          Length = 270

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/124 (8%), Positives = 32/124 (25%), Gaps = 5/124 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  +    +   LA +  +   + +K +         +P  E + ++      ++ +L
Sbjct: 7   LQKRRKEVGFSQEQLAFELNVSRQAVSKWESGQG-----YPEVEKLIQLSELLGISLDEL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           +           K   E    +     S       +    +          R        
Sbjct: 62  MKETREHPSAPIKPLDEEEQEWRDEPHSPITLPDDILDEDSLIGRFAYSTDRDTVERYLD 121

Query: 133 IQTQ 136
           +  +
Sbjct: 122 LNQR 125


>gi|94499248|ref|ZP_01305786.1| transcriptional regulator, Cro/CI family protein [Oceanobacter
          sp. RED65]
 gi|94428880|gb|EAT13852.1| transcriptional regulator, Cro/CI family protein [Oceanobacter
          sp. RED65]
          Length = 182

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + ++  L+   LA++AG+  ++ +  ++  +      PS  S+ K+L     
Sbjct: 2  DVGTRLKEVRKKSGLSQRELAKRAGVTNSTISMIEKNSV-----SPSVSSLKKVLGGIPL 56

Query: 68 TICQLLDLPF 77
          ++ +  +   
Sbjct: 57 SLTEFFETED 66


>gi|328945491|gb|EGG39642.1| transcriptional regulator [Streptococcus sanguinis SK1087]
          Length = 108

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95

Query: 68 T 68
           
Sbjct: 96 N 96


>gi|260438757|ref|ZP_05792573.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876]
 gi|292808744|gb|EFF67949.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876]
          Length = 267

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I ++ ++  L+   LA K  +   + +K +          P  + I ++    + +
Sbjct: 3   LGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQS-----LPDLDFIAQLSDIFSVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
              L+    ++      K++   L             +     G
Sbjct: 58  SDYLIKDEMTEPDELPYKKRNYRLSERSKRIILVIVSAAALVAG 101


>gi|194431949|ref|ZP_03064239.1| DNA-binding protein [Shigella dysenteriae 1012]
 gi|331682878|ref|ZP_08383497.1| putative oxidoreductase/putative repressor [Escherichia coli H299]
 gi|194419857|gb|EDX35936.1| DNA-binding protein [Shigella dysenteriae 1012]
 gi|320182531|gb|EFW57422.1| Transcriptional regulator yidN, Cro/CI family [Shigella boydii ATCC
           9905]
 gi|331080509|gb|EGI51688.1| putative oxidoreductase/putative repressor [Escherichia coli H299]
 gi|332094663|gb|EGI99708.1| helix-turn-helix family protein [Shigella dysenteriae 155-74]
          Length = 178

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGARFAADVTHIYRNGG 163


>gi|327458674|gb|EGF05022.1| transcriptional regulator [Streptococcus sanguinis SK1057]
          Length = 96

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LAR AG+   + +  +R         PS     KI    NE
Sbjct: 29 QLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 83

Query: 68 T 68
           
Sbjct: 84 N 84


>gi|297162225|gb|ADI11937.1| putative transcriptional regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 190

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 21/160 (13%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT      + +   + R       T   LA ++G+      + ++         PS  + 
Sbjct: 1   MTDLDQLTQSLARNLKRWRNERGFTLDALAARSGVSRGMIIQIEQARTN-----PSVGTT 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSG 107
            K+  A   +I  LLD             + + +                +         
Sbjct: 56  VKLADALGVSITTLLDYESGPKVQLVPAAQAVRMWSTDAGSYTALLVGTEARGPLEMWEW 115

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
               G+  ++   P        + A +         D S 
Sbjct: 116 RLMPGDGSDSDPHPSGTFELLHVRAGE---LTLTVGDESY 152


>gi|187477387|ref|YP_785411.1| transcriptional regulator [Bordetella avium 197N]
 gi|115421973|emb|CAJ48494.1| putative transcriptional regulator [Bordetella avium 197N]
          Length = 177

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 9/134 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+    + +   + R+     L+ + LA +AGL        +           S   +  
Sbjct: 1   MSEPVLEHVSANVRRLRAERGLSQTALAARAGLSRRMIVGLESGEAN-----ISLAKLGL 55

Query: 61  ILAATNETICQLLDLPFSDGRT----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           I  A +    +L+  P                +  L+   P  +           G ++ 
Sbjct: 56  IATALDVNFIELVSSPGQTPGALTWRGLHPGSQAHLVASAPGKANTELWIWTLAPGERYQ 115

Query: 117 TVGVPEIRSPHNGI 130
               P   S    +
Sbjct: 116 AEPDPPGWSEILYV 129


>gi|153815811|ref|ZP_01968479.1| hypothetical protein RUMTOR_02056 [Ruminococcus torques ATCC 27756]
 gi|145846836|gb|EDK23754.1| hypothetical protein RUMTOR_02056 [Ruminococcus torques ATCC 27756]
          Length = 146

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     +K++E  +++ +++ ++   +A+  G+  ++ +  KR         P +E++ K
Sbjct: 1   MFVKGGQKMYEIFEQLLQKYGVSAYKVAKATGVTQSTLSDWKRGRST-----PKSENMKK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG------SGGFFDSGVFPTGNK 114
           +      +I  L+       +  + K K+   +    +         G    G   +   
Sbjct: 56  LADYFGVSIDYLMTGKEETEKEPKLKPKDEKDIKEILANTEQLLKQDGLMFDGDPASPEA 115

Query: 115 WNTV 118
             ++
Sbjct: 116 IESI 119


>gi|118594424|ref|ZP_01551771.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181]
 gi|118440202|gb|EAV46829.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181]
          Length = 516

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 12/178 (6%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K +   I  +   H LT +  A K  L P++ ++ +R  +  +        + KI    
Sbjct: 2   QKIVGNNIRELRTLHGLTLNAFAEKLALSPSNLSRIERGSLNIK-----VSLLQKIAEVL 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +     +    +     K  K+    +   S     +    F  G     +   ++ S
Sbjct: 57  GTSPHVFFNKYGQNTGP-IKSIKDFTHQFRESSRYINEYSGKTFVIGFGGEIIQDNQLIS 115

Query: 126 PHNGIYAIQT-QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             + I  +Q+            + P     D L+   + +    +  +    +   V 
Sbjct: 116 LVHDINLLQSLNIRIVLVYG--IRPQI---DFLLNKKSTETMVNNIRVTTKDSMGHVI 168


>gi|118472418|ref|YP_885545.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
 gi|118173705|gb|ABK74601.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
          Length = 201

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 9/151 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   I  + +   LT   LA  AG+     ++ +R         PS  ++ ++      
Sbjct: 19  DLGSRIRMLRKERQLTTERLAETAGVSAGLISQIERGNGN-----PSFATLVQLAHGLQM 73

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125
            I QLL+ P S      K E+     +   +  GG ++              V  P    
Sbjct: 74  PIGQLLEAPESKSVVVRKNERRRLDGHGLANDDGGSYELLTPDLNGALEATWVVTPPGYD 133

Query: 126 PHNGIYAIQTQDTRHKTQD--TSMLPLYRKG 154
                Y    ++            L   R  
Sbjct: 134 TSATPYHHHGEEFGIVLSGTKDVYLDGIRHR 164


>gi|330469929|ref|YP_004407672.1| nickel-type superoxide dismutase maturation protease
           [Verrucosispora maris AB-18-032]
 gi|328812900|gb|AEB47072.1| nickel-type superoxide dismutase maturation protease
           [Verrucosispora maris AB-18-032]
          Length = 115

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 140 HKTQDTSMLPLYRKGDILILNSA-IQVNCGDRL--LIKPRTGDIVAKVLISRRGRSIDLM 196
                 SM P  R GD +++     ++  GD +  + + R   +V K  +        L 
Sbjct: 18  VLVTGPSMSPTLRHGDAVLVRRGGREIRPGDVVIAVFRSRPDLLVVKRAVRPTDGGWWLY 77

Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
             N     D+      + + R++
Sbjct: 78  GDNDLVTDDSRAYGVADVLGRVV 100


>gi|312865953|ref|ZP_07726174.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311098357|gb|EFQ56580.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 158

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 40/146 (27%), Gaps = 6/146 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + + H+LT    A   G+   S ++ +           STE + +I    N +
Sbjct: 2   IGDNLKALRKSHHLTQPEFAAMIGISRNSLSRYENGTS-----SVSTELLDRICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L           E  +  + +      G+G       +      +   V       +
Sbjct: 57  YIDL-VGQEKMLGPVEDYQLTLKIEIIKERGAGILSQLYRYQDSQGIDFDDVSNPWILMS 115

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKG 154
              +       +       L  Y   
Sbjct: 116 DDLSDLINSKIYLVASFDELDRYNGY 141


>gi|302387287|ref|YP_003823109.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302197915|gb|ADL05486.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 331

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + ++   +   LA + G+   S +K +          P  E I K+      +
Sbjct: 3  LAEKITALRKKVGWSQEELAYQMGVSRQSVSKWESGTSI-----PDLERILKLSQVFGVS 57


>gi|239820585|ref|YP_002947770.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805438|gb|ACS22504.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 190

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S S  +I   +  +    +++   LA+ +G+  +  ++ +R  +      PS E++ +
Sbjct: 1  MRSLSAARIGAQVRALRMAADVSGGALAKASGISASMLSRIERGLV-----SPSVETLER 55

Query: 61 ILAATNET 68
          +      +
Sbjct: 56 LSKGLGVS 63


>gi|226312433|ref|YP_002772327.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226095381|dbj|BAH43823.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 185

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 19/180 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  I E I R+ +  NL+    +   G+  T   + +R         P+  +++KI +  
Sbjct: 5   HTNIGENIKRIRKERNLSLDKTSEITGVSKTMLGQIERGKS-----APTITTLWKIASGL 59

Query: 66  NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             +   L+     +             + + +  +    P      F+            
Sbjct: 60  RLSFSSLISQYKPNVTIVKKKEVNPIIENDGQYRVYPLVPYNPEQQFEIFSVTLEPGCEH 119

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIK 174
           +  P        I   +      +      + +    D LI  +         GDR++  
Sbjct: 120 IAEPHTTGVEEFILVNEG---TLEVVVNEQIYVVEPEDTLIFKADRPHIYQNNGDRIVKC 176


>gi|283833076|ref|ZP_06352817.1| toxin-antitoxin system, antitoxin component, Xre family
           [Citrobacter youngae ATCC 29220]
 gi|291070694|gb|EFE08803.1| toxin-antitoxin system, antitoxin component, Xre family
           [Citrobacter youngae ATCC 29220]
          Length = 191

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 14/148 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E    + + LA +AG+     +K +R         P+   + ++  A 
Sbjct: 9   NQRIGARIRLERESRGWSLTDLAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAF 63

Query: 66  NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             ++  L+               +      +   L       S    D          + 
Sbjct: 64  GISMSMLIARAEMQEGKLLRFADQPVWHDPQSHYLRRHVSPRSDLPIDLVQIELPAGSD- 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
           + +P              Q      +  
Sbjct: 123 IPMPASSYVQARQLIWLQQGELVFVEGD 150


>gi|220920598|ref|YP_002495899.1| peptidase S24 and S26 domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219945204|gb|ACL55596.1| peptidase S24 and S26 domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 171

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 38/141 (26%), Gaps = 4/141 (2%)

Query: 84  EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKT 142
               +               F       G   +     E         A         + 
Sbjct: 1   MSLYRVGEQAADWSGLVRIPFMRTTLCAGFPSSAEDFTEGALELPRWLAPNPAATFIWRV 60

Query: 143 QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
           +   M        D+ +++ ++  + G  ++     G++  K L+   G  + L   N  
Sbjct: 61  RGWCMKGAGIHDQDLAVVDRSLHPSPGAVVVAIVN-GEMSLKRLV-LDGNRLALTFDNPE 118

Query: 202 YPVDTVEMSDIEWIARILWAS 222
            P   +E  +   I  +L  S
Sbjct: 119 MPAFGLEDLEECQIWGVLLFS 139


>gi|258508248|ref|YP_003170999.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|257148175|emb|CAR87148.1| Transcriptional regulator, xre family protein [Lactobacillus
           rhamnosus GG]
 gi|259649565|dbj|BAI41727.1| putative transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 176

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ +R  L+ + LA   G+   + +K +    E     P  + I +       + 
Sbjct: 3   GERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAE-----PDLQKIQQFTMILGVSY 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
             LL     + +    +      +    +   G +       G
Sbjct: 58  ADLLGNEPPEPKPAANRPSSAITITSLINDRLGNYTGFQIAEG 100


>gi|225405507|ref|ZP_03760696.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme
          DSM 15981]
 gi|225042960|gb|EEG53206.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme
          DSM 15981]
          Length = 398

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I   I  +     +T   LAR  G+   + +K +          P  + +  I     
Sbjct: 2  NIGATIVNLRREKGVTQEQLARAVGVSKPAVSKWETGQS-----CPDIQLLAPIARYFG 55


>gi|199597505|ref|ZP_03210934.1| Transcriptional regulator, xre family protein [Lactobacillus
           rhamnosus HN001]
 gi|199591528|gb|EDY99605.1| Transcriptional regulator, xre family protein [Lactobacillus
           rhamnosus HN001]
          Length = 176

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ +R  L+ + LA   G+   + +K +    E     P  + I +       + 
Sbjct: 3   GERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAE-----PDLQKIQQFTMILGVSY 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
             LL     + +    +      +    +   G +       G
Sbjct: 58  ADLLGNEPPEPKPAANRPSSAITITSLINDRLGNYTGFQIAEG 100


>gi|157145741|ref|YP_001453060.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895]
 gi|157082946|gb|ABV12624.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895]
          Length = 191

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 14/147 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E    + + LA +AG+     +K +R         P+   + ++  A 
Sbjct: 9   NQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAF 63

Query: 66  NETI--------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             ++         Q   L     +      +   L       S    D          + 
Sbjct: 64  GISMSTLIARAEMQEGKLLRFADQPVWHDPQTHYLRRHVSPRSDLPIDLVQISLPAGSD- 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQD 144
           V +P              Q      + 
Sbjct: 123 VPMPAASYALARQLIWLQQGELVFVEG 149


>gi|282861056|ref|ZP_06270121.1| putative phage repressor [Streptomyces sp. ACTE]
 gi|282563714|gb|EFB69251.1| putative phage repressor [Streptomyces sp. ACTE]
          Length = 145

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179
           PE+     G  A++      +    SM+P +  GD L++    +V  GD ++++      
Sbjct: 2   PELTQEPGGGRAVRRPFQVVEVTGPSMVPTFYHGDWLLVQYGARVRPGDVVILRHPFQQD 61

Query: 180 -IVAKVLISRRGRSIDLMSLN 199
            +V K    RRG    ++  N
Sbjct: 62  LLVVKRAAERRGNGWWVLGDN 82


>gi|238060873|ref|ZP_04605582.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
 gi|85720864|gb|ABC75843.1| SigN [Micromonospora sp. ATCC 39149]
 gi|237882684|gb|EEP71512.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
          Length = 120

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLL--IKPRTGDIV 181
                   ++   T       SM P  R GD L++      +  GD ++   + R   +V
Sbjct: 4   DDPRAADRLRGPLTAVLVTGPSMAPTLRHGDALLVRRGGRPIRPGDIVVAVFRSRPDLLV 63

Query: 182 AKVLISRRGRSIDLMSLNC--CYPVDTVEMSDIEWIARIL 219
            K  +        +   N           ++D+    R++
Sbjct: 64  VKRAVRPAAGGWWVRGDNDLVTDDSRAYGVADVR--GRVI 101


>gi|50121835|ref|YP_051002.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612361|emb|CAG75811.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043]
          Length = 370

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 38/127 (29%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    ER  LT   LA  AGL   + +  ++ GI       S E I  +L    E   
Sbjct: 5   ERLCIARERRGLTQRALAEAAGLTSKTISNYEKAGIFDAIASDSMERISAVLEYPIEFFL 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                  +    + +   ++       +   G     +    +    +  P +       
Sbjct: 65  DRDVPSLTPEAVSFRAMTKLSAQKRDSALGAGKLAQELSAWIDGQFKLPKPNVPDSSFDG 124

Query: 131 YAIQTQD 137
           Y+   + 
Sbjct: 125 YSEPERA 131


>gi|303240597|ref|ZP_07327112.1| putative phage repressor [Acetivibrio cellulolyticus CD2]
 gi|302591834|gb|EFL61567.1| putative phage repressor [Acetivibrio cellulolyticus CD2]
          Length = 223

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 69/229 (30%), Gaps = 32/229 (13%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I ++ +   +T   L +  G+        +        R    E + K  +    
Sbjct: 4   RMGSEISKLRKELGITQKQLGKIVGVSEGFIIDVETG------RRILNEDLIKKFSKALR 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF----------FDSGVFPTGNKWNT 117
                LD+  ++ +    + ++  +          +               +    +   
Sbjct: 58  GEVGKLDIYEAEEKAYRPEPQKNVVKVVEKPVQDIWNDALAGVLMVVPVYNYKMEKQVEV 117

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
             +P I +   G +A           +        KGD++++++  ++   D +      
Sbjct: 118 KQLPIINNKVEG-FAKDKVFYLVIEDNDMAGFRVLKGDLVLVHNTHEI-DKDGIFFVEYK 175

Query: 178 GDIVAKVLISRRGRSIDLMSLNC-------CYPVDTVEMSDIEWIARIL 219
           G    + + +  G  + ++S N         Y        D+  + R++
Sbjct: 176 GKRTIRQIKNIEGGRLLIVS-NRGSLVTDTAY------RKDVNVLGRLV 217


>gi|239977932|ref|ZP_04700456.1| putative transcriptional regulator [Streptomyces albus J1074]
          Length = 211

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 8/135 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL---AAT 65
           +   +  + +    T +GL+   G+  ++ ++ +        R PS E +  I       
Sbjct: 27  VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGN-----RRPSLELLLPIAAAHDVP 81

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            + +           R    ++    ++       G      V   G   + V       
Sbjct: 82  LDRLVGAPPAGDPRVRLEPIEQGNRTVIPLSRRPGGLQAFKWVLRPGEGCDPVEEQRTHE 141

Query: 126 PHNGIYAIQTQDTRH 140
            +  +Y I  +    
Sbjct: 142 GYEWLYVISGRLRLL 156


>gi|297153462|gb|ADI03174.1| putative transcriptional regulator, XRE family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 204

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 11/155 (7%)

Query: 1   MTSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   + +A    +  +     +T + LA   G+  ++ ++ +        R PS E
Sbjct: 4   MDPKTDDDVLDAVGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQ-----RRPSLE 58

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            +  +       +  L+  P +       K  +   + + P S   G   +       + 
Sbjct: 59  LLLPLARIYGVPLDDLVGAPRTGDPRIHLKPIRRYGMTFVPLSRRPGGVHAFKMIIPARP 118

Query: 116 NTVG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
             +   P+       +Y +         +    LP
Sbjct: 119 EPLEPTPQTHEGFEWLYVLNGHLRLVIGERDLTLP 153


>gi|237737466|ref|ZP_04567947.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421328|gb|EEO36375.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 152

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I +  E   L+   LA KAG+   +    +R   +G+       ++ KI  A N T  + 
Sbjct: 14 IKKFREDRGLSQKQLAEKAGIGSGTIGDIERGDRKGK-----ISTLDKISKALNLTKEER 68

Query: 73 LDLPFSDGRTTEKKEKEIPLLYF 95
            L  +            P +  
Sbjct: 69 DRLDNAFMGRNITSSSIDPRVEI 91


>gi|325529272|gb|EGD06223.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 183

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +  +H L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 4   EVAERLRFVRNKHALSQRELAKRAGVTNGTISLIEQGRV-----SPSVGSLKKLLECIPM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +       + RT   +  E+P L                        V  P +    
Sbjct: 59  SLAEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGAGVKDRNMCIMREVYQP-LADTG 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             +      +          L +   G   +L+       GD    + R          +
Sbjct: 118 PEMLVHAGHEGGVVVSGRLELTV--DGATWLLDP------GDGYYFESRLPH----RFRN 165

Query: 188 RRGRSI-DLMSLNC 200
                I +++S N 
Sbjct: 166 PSAEQICEVVSANS 179


>gi|312891075|ref|ZP_07750598.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311296383|gb|EFQ73529.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 116

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +++ + I  +      + S  A K G+   +F+K +    +         +I KIL  
Sbjct: 2  QELGKNIKLLRHEKGWSQSDFAAKLGISVPAFSKIENGLTDLHLS--RLNNIAKILDM 57


>gi|282865716|ref|ZP_06274766.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282559360|gb|EFB64912.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 199

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 14/99 (14%)

Query: 1  MTSFSHKK---------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          M   S +          +   + R+ +   +T + LA   G+  ++ ++ +  G     R
Sbjct: 1  MKEKSQEDPELDAVLTGVGPRLRRLRKDRGVTLAALAEATGISVSTLSRLESGG-----R 55

Query: 52 WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90
           PS E +  I  A    +  L+  P         K    
Sbjct: 56 RPSLELLLPIARAHEVPLDDLVGAPPPGDPRVRAKPIVH 94


>gi|261253382|ref|ZP_05945955.1| probable transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260936773|gb|EEX92762.1| probable transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 180

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 56/198 (28%), Gaps = 32/198 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + +  +     L+   LA+++G+  +  ++ ++  +      PS  S+ KIL A   
Sbjct: 2   DVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVN-----PSVGSLKKILDAIPI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-------KWNTVGV 120
           ++ +   L          + K+            G     +   G               
Sbjct: 57  SMGEFFTLEV--------EAKDDIFFTVDQMADLGDGKIKMLLVGAKREGRQLAILREFY 108

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P            + ++     +    +         + +    +  GD    + R    
Sbjct: 109 PPGSDTGPDFLQHEGEEGGVVIRGEIEI--------TVGSKTQVLKAGDSYYFETRKPH- 159

Query: 181 VAKVLISRRGRSIDLMSL 198
                 ++     +L+S 
Sbjct: 160 ---RFRNKGKVECELISA 174


>gi|157145722|ref|YP_001453041.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895]
 gi|157082927|gb|ABV12605.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895]
          Length = 178

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +H  +   +  + ++   + S LA   G+      + +R         P+  +++K
Sbjct: 1  MDNLTH-YLATTLKALRQQREWSLSRLAEATGVSKAMLGQIERNES-----SPTVSTLWK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I    N      +  P ++   T   +++  ++
Sbjct: 55 IATGLNVPFSTFISPPEAEDLPTFDPQQQAMVI 87


>gi|118472941|ref|YP_890853.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
 gi|118174228|gb|ABK75124.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
          Length = 472

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          I   + R+ E H LT   LAR  GL  +  N+ +     
Sbjct: 6  IGPRLRRLREEHGLTQVALARALGLSTSYINQLENDQRP 44


>gi|38232985|ref|NP_938752.1| putative regulatory protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199243|emb|CAE48874.1| Putative regulatory protein [Corynebacterium diphtheriae]
          Length = 474

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 5/121 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++ +  +LT + LA   G+  +  N+ +        R  + + + KI A+    
Sbjct: 6   VGSRLRQLRKERDLTQAALAELLGISASYINQIEHDV-----RPLTPQVLRKITASFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S              +   P                    V +        
Sbjct: 61  ATFFSRDDSSRLIAELHDVMFDKEVCPQPIDVTELSTLVDHHPEAARAMVEMHRRYRRLR 120

Query: 129 G 129
            
Sbjct: 121 D 121


>gi|300812901|ref|ZP_07093295.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|300496127|gb|EFK31255.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
          Length = 122

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +  +  R  ++   LA   G+   + +  +        + P  +++ KI      +
Sbjct: 6  IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKTVEKIANIFGVS 60

Query: 69 IC 70
            
Sbjct: 61 RN 62


>gi|15831463|ref|NP_310236.1| repressor protein [Escherichia coli O157:H7 str. Sakai]
 gi|13361675|dbj|BAB35632.1| putative repressor protein [Escherichia coli O157:H7 str. Sakai]
          Length = 174

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 46/170 (27%), Gaps = 19/170 (11%)

Query: 45  GIEGRNRWPSTESIFKILAAT-NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
              G        S+ KIL    N  +             +    K +PLL    + S   
Sbjct: 2   NGGGAPSSRYISSLAKILKVNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWS- 60

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-----YRKGDILI 158
                       + +    I S    +  I         +  SM           G  + 
Sbjct: 61  ------------DYMKNSSITSCVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVF 108

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
           ++    V  G+ +L  P+         +   G  I L+  N  YP   ++
Sbjct: 109 VDPDRIVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPTNPRYPSIMLD 158


>gi|306813594|ref|ZP_07447777.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|305853041|gb|EFM53485.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
          Length = 178

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P S   +    +++  ++                     G    +    +    H
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124


>gi|293556759|ref|ZP_06675322.1| signal peptidase I [Enterococcus faecium E1039]
 gi|291601091|gb|EFF31380.1| signal peptidase I [Enterococcus faecium E1039]
          Length = 183

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/104 (9%), Positives = 36/104 (34%), Gaps = 13/104 (12%)

Query: 117 TVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
            +    +       + ++         +  SM  + ++GD++++    ++   D ++ + 
Sbjct: 12  WLIFKYLLVSVFLAFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQL 71

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
             G I  K +I   G               + +   ++   +++
Sbjct: 72  ADGTIYIKRVIGLPG------------ENVSYQNDQLKINGKVV 103


>gi|218553960|ref|YP_002386873.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|256018347|ref|ZP_05432212.1| putative DNA-binding transcriptional regulator [Shigella sp. D9]
 gi|300901847|ref|ZP_07119882.1| helix-turn-helix protein [Escherichia coli MS 84-1]
 gi|301306843|ref|ZP_07212892.1| helix-turn-helix protein [Escherichia coli MS 124-1]
 gi|332279399|ref|ZP_08391812.1| conserved hypothetical protein [Shigella sp. D9]
 gi|218360728|emb|CAQ98289.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|300406059|gb|EFJ89597.1| helix-turn-helix protein [Escherichia coli MS 84-1]
 gi|300837928|gb|EFK65688.1| helix-turn-helix protein [Escherichia coli MS 124-1]
 gi|315253499|gb|EFU33467.1| helix-turn-helix protein [Escherichia coli MS 85-1]
 gi|332101751|gb|EGJ05097.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 178

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P S   +    +++  ++                     G    +    +    H
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124


>gi|210612865|ref|ZP_03289498.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787]
 gi|210151386|gb|EEA82394.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787]
          Length = 223

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA K G++  S +K +R        +P+ +++ KI+     T
Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65

Query: 69 ICQLLDLPFSDGRTTEK 85
            +LL   +     TE 
Sbjct: 66 PNELLSGEWKYIDHTEP 82


>gi|288549632|ref|ZP_05967658.2| DNA-binding protein [Enterobacter cancerogenus ATCC 35316]
 gi|288318084|gb|EFC57022.1| DNA-binding protein [Enterobacter cancerogenus ATCC 35316]
          Length = 183

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    H  +   +  + +    + S LA K G+      + +R         P+  +++K
Sbjct: 9   MDMTQH--LASTLKALRQARGWSLSMLAEKTGVSKAMLGQIERNES-----SPTVSTLWK 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I    N      +          + +++ + +  L+           S     G    + 
Sbjct: 62  IATGLNVPFSAFITPEAESPAVYDPQQQAMVVKPLFPWDEALKFDHFSITLAPGALSEST 121

Query: 119 GVPEIRSPH 127
                   H
Sbjct: 122 PHEAGVIEH 130


>gi|154250004|ref|YP_001410829.1| cupin 2 domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153940|gb|ABS61172.1| Cupin 2 conserved barrel domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 175

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 44/171 (25%), Gaps = 18/171 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI   I R+      T   LA +  L  +  ++ +   +      PS E++ ++L     
Sbjct: 2   KIGSKIKRLRLARGYTQEELADRCDLSRSFISQLESDKV-----SPSVETLERVLRVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +           +   KK + +P+   P                       +       
Sbjct: 57  DL--KHFFSDEQKKIIFKKNERVPMYELPKGVKIDILMD-------GIEDKEIDAKIVEL 107

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRT 177
                 + +D            +      + ++    + N GD        
Sbjct: 108 EPGSQTEQEDYH---DGDEFGYVIEGSVEIYIDGKKYRANEGDCFYYSADC 155


>gi|153810982|ref|ZP_01963650.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174]
 gi|149832870|gb|EDM87953.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174]
          Length = 126

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + ++ +  +L+   LA+K G+   S N  +        R PS ++  KI       I ++
Sbjct: 10 LAQLRQNAHLSQKQLAQKLGVSQASINYWENGQ-----RTPSVKAAQKISDYFKMPISEI 64

Query: 73 LDLP 76
              
Sbjct: 65 FSPY 68


>gi|148380346|ref|YP_001254887.1| DNA-binding phage protein [Clostridium botulinum A str. ATCC
          3502]
 gi|148289830|emb|CAL83938.1| putative DNA-binding phage protein [Clostridium botulinum A str.
          ATCC 3502]
          Length = 144

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I E I  + E   +    L++   +   S +  +        R P  + + KI    N
Sbjct: 2  KTIGERIKELREEKGINQLELSKILNVHKGSVSNWENN-----KRTPDADMLTKIADFFN 56

Query: 67 ET 68
           +
Sbjct: 57 CS 58


>gi|119491284|ref|ZP_01623338.1| Transcriptional Regulator of molybdate metabolism, XRE family
           protein [Lyngbya sp. PCC 8106]
 gi|119453448|gb|EAW34610.1| Transcriptional Regulator of molybdate metabolism, XRE family
           protein [Lyngbya sp. PCC 8106]
          Length = 377

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 37/139 (26%), Gaps = 5/139 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                ++   + ++  R  L+   LA+  G+   + +  +          PS     ++ 
Sbjct: 1   MKQDNELQNRLKQIRTRLGLSQQDLAKVVGVSRQTISGVESGQY-----APSARIALRLA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A    +  L  L     R      + +P+               +       +      
Sbjct: 56  KALGCQMEDLFWLEEDCLRVEATPAQAVPVDQDVRFTLARVGGKLMAYPLLGEDAFRTEM 115

Query: 123 IRSPHNGIYAIQTQDTRHK 141
           I +   G    +    + K
Sbjct: 116 IPADGEGWGQTENDAVQVK 134


>gi|328880928|emb|CCA54167.1| putative transcriptional regulatory protein [Streptomyces
           venezuelae ATCC 10712]
          Length = 190

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 18/145 (12%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M+      + +   + R  +   LT   LA +AG+      + ++         PS  + 
Sbjct: 1   MSDLDQLTQSLARNLKRWRKERGLTLDALAARAGVSRGMIIQIEQARTN-----PSVGTT 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSG 107
            K+  A   +I  LLD            ++ + +                +       S 
Sbjct: 56  VKLADALGVSITTLLDYEQGPQVRIVPPDQAVRMWSTSTGSHTTLLVGTEARGPLELWSW 115

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYA 132
               G+   +   P+       + A
Sbjct: 116 TLMPGDGSASDPHPDGTVELLNVTA 140


>gi|163745179|ref|ZP_02152539.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45]
 gi|161381997|gb|EDQ06406.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45]
          Length = 183

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 7/139 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + +  + ++H L+   LA KAGL   + +  ++         PS  S+  +L A   
Sbjct: 2   NVGDKLRAIRKKHGLSQRELAAKAGLTNGTISLIEKNRT-----SPSVASLKSLLDAIPI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRS 125
           ++ +   +   D         +      P    G           +              
Sbjct: 57  SMAEFFSILEEDDSAKVFYRAQELTEISPSHQGGVSLRQLGNAAQHALQVLHETYEPGAD 116

Query: 126 PHNGIYAIQTQDTRHKTQD 144
                     ++     + 
Sbjct: 117 TGPEFLHHDGEEAGVVVRG 135


>gi|163815391|ref|ZP_02206766.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC
          27759]
 gi|158449365|gb|EDP26360.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC
          27759]
          Length = 172

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   + ++ +   +T   +A K G+   S ++ +          P    + ++ 
Sbjct: 13 MIDQVKIGNFLRKLRKEKGMTQEEIATKFGVSSRSVSRWENGNT-----MPDLAILVELA 67

Query: 63 AATNETICQ 71
             +  I +
Sbjct: 68 DYYDVDIRE 76


>gi|150014927|ref|YP_001307181.1| helix-turn-helix domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901392|gb|ABR32225.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 222

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 64/216 (29%), Gaps = 10/216 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK--RFGIEGRNRWPSTESIFKILAAT 65
           ++ E I +  E+  LT   LA+K G+     N+ +  R          + + +   L   
Sbjct: 3   RVGENIKQAREKSGLTVKALAKKLGVAEKYLNEVEMGRKVAPESLIDKAGKVLKADLNDI 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS----GGFFDSGVFPTGNKWNTVGVP 121
           +  +   + +          K        +  + S                     + + 
Sbjct: 63  SMVVTDEVLMEERKTLKEIPKRNVESSEVWTDAFSSVLRSVPIYDYSLSNKKGSKEMPIH 122

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             +  +      Q +    + +D  M         +    A++        +    G   
Sbjct: 123 SNKIENYP----QDKVFYLEIEDDEMNGFRMLKGDVAFAHAVKDISNSGFFLIDYKGKRK 178

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            + +       + L+S       +T+E+ +++ IA+
Sbjct: 179 VRQIKVLGNSKLLLVSNAGSLLTETMELKEVDVIAK 214


>gi|332363049|gb|EGJ40836.1| transcriptional regulator [Streptococcus sanguinis SK355]
          Length = 108

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LAR AG+   + +  +R         PS    FKI    NE
Sbjct: 41 QLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYT-----PSIVIAFKIAHIFNE 95

Query: 68 T 68
          +
Sbjct: 96 S 96


>gi|323173144|gb|EFZ58775.1| transcriptional regulator, XRE family [Escherichia coli LT-68]
 gi|332088053|gb|EGI93178.1| transcriptional regulator, XRE family [Shigella boydii 5216-82]
          Length = 87

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS-----RRGRSIDLMSLNCC 201
           M P +++GDI+I+++ +    G+ +     + +   K         +     +L+ LN  
Sbjct: 1   MEPEFKEGDIVIIDTDVYPTPGEFVAACNGSHEATFKKYRPVGIGAKGEEDFELVPLNSD 60

Query: 202 YPVDTVEMSDIEWIARIL 219
           YP+       I+ I  ++
Sbjct: 61  YPICRSWEKPIKIIGTMV 78


>gi|307130384|ref|YP_003882400.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306527913|gb|ADM97843.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 188

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 17/167 (10%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M+  ++  K+I   I    E    + S LA KA +     +K +R         P+   +
Sbjct: 1   MSKETNMDKRIAARIRSERENRGWSLSDLAEKASVSRAMIHKIERGES-----SPTANLL 55

Query: 59  FKILAATNETICQLLDLPFSDG--------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
            K+  A   ++  LL               + T +  +   +      GS   FD     
Sbjct: 56  GKLSGAFGLSMSTLLARAEMKQGRLLRVNDQPTWQDPETGYIRRHVSPGSDLPFDIVHIT 115

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                  V +P                     +   +    ++GD L
Sbjct: 116 LPPG-EKVPMPASAYAFLRQLVWVLSGELVFVEGD-VTHEMKQGDCL 160


>gi|295108419|emb|CBL22372.1| Helix-turn-helix. [Ruminococcus obeum A2-162]
          Length = 124

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E I    ++  ++   LA + G++  +  K +        R P  E + KI      
Sbjct: 28  EINEKIRYFRKQRGISQELLAERTGINVNTIRKYEIGI-----RKPKVEQLKKIADGLEI 82

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           +  + LD+   +        K+I   +               
Sbjct: 83  SAIEFLDIEIENEADLIAMLKKISPFFKWDGLLHVLEGEKFL 124


>gi|269794649|ref|YP_003314104.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter
          keddieii DSM 10542]
 gi|269096834|gb|ACZ21270.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter
          keddieii DSM 10542]
          Length = 509

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+    +I   I    + H  T + LA K G   ++ N+ ++ G        S +++ +
Sbjct: 1  MTTIDAARIGTLIRDARKLHGWTQAHLADKIGTSQSAVNRIEKGGQN-----LSLDTVRR 55

Query: 61 ILAAT 65
          I  A 
Sbjct: 56 ISEAL 60


>gi|331660294|ref|ZP_08361229.1| protein ImpA [Escherichia coli TA206]
 gi|331052561|gb|EGI24597.1| protein ImpA [Escherichia coli TA206]
          Length = 81

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           + GD+L+++ A +   GD ++ +   G+   K L+ R   +++L+S +  +   T+   +
Sbjct: 7   QNGDLLVVDRAEKPQHGDIVIAEID-GEFTVKRLLLRPCPALELVSDSPEF--RTLYPEN 63

Query: 212 IEWIARI 218
           I     +
Sbjct: 64  ICIFGVV 70


>gi|295099191|emb|CBK88280.1| Predicted transcriptional regulator with C-terminal CBS domains
           [Eubacterium cylindroides T2-87]
          Length = 464

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 6/104 (5%)

Query: 1   MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M      +KI   +        ++ + LAR+ G+  +  N+ +          P+ + I 
Sbjct: 1   MDELRKRQKIISQLVEARLEQGISQAELARRLGIQRSGINRLESGTQN-----PTLDMIL 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
           KI +A  + +   L+                  L        G 
Sbjct: 56  KIASALGKDVSLELNDKEEPMSNVYSLRIYDTELMRFSMEKQGL 99


>gi|260550789|ref|ZP_05824996.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406099|gb|EEW99584.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 210

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 17/144 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T   H  +   I  + +   L+   LA +AG+   +    +   +       S   +  I
Sbjct: 33  TVLQH--VGTNIRSLRDERGLSQQELADQAGVSRRTIAALETGQVN-----ISLAKLDAI 85

Query: 62  LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
                     ++  P               EK+E +  LL   PS S     +     G 
Sbjct: 86  AIVLGVNFRTIVSAPEHKEHALVNVLAWQGEKEESKATLLASVPSHSQVELWTWSLAVGE 145

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137
            +     PE       IY ++ + 
Sbjct: 146 SYIAEADPEGW--QELIYVLEGEL 167


>gi|228475590|ref|ZP_04060308.1| putative bacteriophage CI repressor protein [Staphylococcus
          hominis SK119]
 gi|228270372|gb|EEK11807.1| putative bacteriophage CI repressor protein [Staphylococcus
          hominis SK119]
          Length = 137

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I ++ +  N++   LA K G+   S +  +R         P  ++I +I    N 
Sbjct: 4  KIGHQIQKLRKSENMSQEKLAEKLGVSRHSISNWEREISN-----PDLKTILEITKLFNV 58

Query: 68 TICQLLDLPFSDGRTTE 84
          ++ QL+           
Sbjct: 59 SLNQLIKGVEIMQVNKY 75


>gi|15801709|ref|NP_287727.1| hypothetical protein Z2285 [Escherichia coli O157:H7 EDL933]
 gi|15831292|ref|NP_310065.1| hypothetical protein ECs2037 [Escherichia coli O157:H7 str. Sakai]
 gi|168748967|ref|ZP_02773989.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113]
 gi|168759171|ref|ZP_02784178.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401]
 gi|168761476|ref|ZP_02786483.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501]
 gi|168769035|ref|ZP_02794042.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486]
 gi|168774335|ref|ZP_02799342.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196]
 gi|168781404|ref|ZP_02806411.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076]
 gi|168788512|ref|ZP_02813519.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869]
 gi|168799439|ref|ZP_02824446.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508]
 gi|195936926|ref|ZP_03082308.1| hypothetical protein EscherichcoliO157_10762 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810881|ref|ZP_03252714.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206]
 gi|208815156|ref|ZP_03256335.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045]
 gi|208818249|ref|ZP_03258569.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042]
 gi|209397754|ref|YP_002270440.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115]
 gi|217329087|ref|ZP_03445167.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254792977|ref|YP_003077814.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261224380|ref|ZP_05938661.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257365|ref|ZP_05949898.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282537|ref|YP_003499355.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615]
 gi|12515268|gb|AAG56341.1|AE005362_11 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361504|dbj|BAB35461.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770139|gb|EDU33983.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196]
 gi|188016678|gb|EDU54800.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113]
 gi|189000937|gb|EDU69923.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076]
 gi|189354230|gb|EDU72649.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401]
 gi|189361883|gb|EDU80302.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486]
 gi|189368111|gb|EDU86527.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501]
 gi|189371782|gb|EDU90198.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869]
 gi|189378128|gb|EDU96544.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508]
 gi|208724387|gb|EDZ74095.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206]
 gi|208731804|gb|EDZ80492.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045]
 gi|208738372|gb|EDZ86054.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042]
 gi|209159154|gb|ACI36587.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115]
 gi|209771028|gb|ACI83826.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|209771030|gb|ACI83827.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|209771032|gb|ACI83828.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|209771034|gb|ACI83829.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|209771036|gb|ACI83830.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|217317526|gb|EEC25954.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592377|gb|ACT71738.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|290762410|gb|ADD56371.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615]
 gi|320190111|gb|EFW64762.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
           O157:H7 str. EC1212]
 gi|320637032|gb|EFX06893.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. G5101]
 gi|320642399|gb|EFX11685.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H- str. 493-89]
 gi|320647755|gb|EFX16500.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H- str. H 2687]
 gi|320653362|gb|EFX21499.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320659028|gb|EFX26651.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320663862|gb|EFX31090.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326340694|gb|EGD64491.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
           O157:H7 str. 1044]
 gi|326340945|gb|EGD64738.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
           O157:H7 str. 1125]
          Length = 178

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P S   +    +++  ++                     G    +    +    H
Sbjct: 67  ISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124


>gi|320321358|gb|EFW77485.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 130

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I   I  + +  +LT   LA     +  +  + +R         PS E I K+     
Sbjct: 26  KIIGTRIKALRKHRSLTQEALAEAMACETATIGRYERGEF-----SPSVEQIAKMADVLG 80

Query: 67  ETICQLLDLPFSDGRTTEKKEKE 89
            +  +++   +   R      +E
Sbjct: 81  VSPAEIIPSSYEISRQELVDLRE 103


>gi|222530393|ref|YP_002574275.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457240|gb|ACM61502.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 77

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + + ++  +  L+   LA+ AG+  ++    +R       R P+ +++ ++  A   +
Sbjct: 2  VGKKLRKLRTQKGLSQQQLAKIAGVPQSTIWYIEREN-----RNPTIKTMKRLATALGVS 56

Query: 69 ICQL 72
          I + 
Sbjct: 57 IEEF 60


>gi|150398353|ref|YP_001328820.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150029868|gb|ABR61985.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 182

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   + R+  RHNL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGNRLRRVRLRHNLSQRELAKRAGVTNSTISLIESNSSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         R   
Sbjct: 59 GLAEFFSFEPEKPRKAF 75


>gi|82543302|ref|YP_407249.1| repressor protein [Shigella boydii Sb227]
 gi|81244713|gb|ABB65421.1| repressor protein [Shigella boydii Sb227]
 gi|323953491|gb|EGB49357.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Escherichia coli H252]
          Length = 189

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 54/210 (25%), Gaps = 40/210 (19%)

Query: 12  AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           AI+RM E +   T   L    G+  ++   +  R            E + +    T  ++
Sbjct: 10  AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L     S   +      E+                     G           +     
Sbjct: 63  NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPS 108

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +              +        +         +  G  ++     G++  + +    
Sbjct: 109 TFKKP------FVITDNNSEFICDKEF------DDIRDGKWVISID--GEVTIRDITRLP 154

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G  I +   N  +     ++ DIE I +I+
Sbjct: 155 GGRIFVEGGNRAF---ECKIEDIEIIGKII 181


>gi|16762234|ref|NP_457851.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29143723|ref|NP_807065.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213419177|ref|ZP_03352243.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213425644|ref|ZP_03358394.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213580196|ref|ZP_03362022.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213608063|ref|ZP_03368889.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
 gi|213646691|ref|ZP_03376744.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213857947|ref|ZP_03384918.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|289805295|ref|ZP_06535924.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
 gi|289825759|ref|ZP_06544927.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25350381|pir||AC0925 repressor protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504538|emb|CAD09421.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139358|gb|AAO70925.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 189

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 54/210 (25%), Gaps = 40/210 (19%)

Query: 12  AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           AI+RM E +   T   L    G+  ++   +  R            E + +    T  ++
Sbjct: 10  AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L     S   +      E+                     G           +     
Sbjct: 63  NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPS 108

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +              +        +         +  G  ++     G++  + +    
Sbjct: 109 TFKKP------FVITDNNSEFICDKEF------DDIRDGKWVISID--GEVTIRDITRLP 154

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G  I +   N  +     ++ DIE I +I+
Sbjct: 155 GGRIFVEGGNRAF---ECKIEDIEIIGKII 181


>gi|317471258|ref|ZP_07930622.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp.
          3_2_56FAA]
 gi|316901266|gb|EFV23216.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp.
          3_2_56FAA]
          Length = 155

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             KKI   I  +     +T + L  K G+   + ++ +          P   ++  +  
Sbjct: 16 LDQKKIGIFIALLRRERGITQAELGEKIGVTNKTVSRWENGNY-----MPDIATMLSLCE 70

Query: 64 ATNETICQ 71
              +I +
Sbjct: 71 EFEISINE 78


>gi|284038170|ref|YP_003388100.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817463|gb|ADB39301.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74]
          Length = 67

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT    K++ + I     +  +T     +  G+  T+ N  +        +  + +++ K
Sbjct: 1  MTELK-KQVGQRIKEARNQKGITQREFGKMLGVSHTTVNGYETG-----KQNLTLDTLEK 54

Query: 61 ILAATNE 67
          + AA   
Sbjct: 55 VAAALGM 61


>gi|284040164|ref|YP_003390094.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819457|gb|ADB41295.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74]
          Length = 68

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 3  SFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              K+I    I    +   LT   LA K G+  ++ N+ +        +  + +++ KI
Sbjct: 1  MTDIKQITSTQIRDARKAKGLTQKELAEKLGVSESTVNQYESG-----KQNLTIDTLVKI 55

Query: 62 LAATNETI 69
            A     
Sbjct: 56 ANALGMKF 63


>gi|116629237|ref|YP_814409.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC
           33323]
 gi|116629297|ref|YP_814469.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC
           33323]
 gi|116094819|gb|ABJ59971.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
           33323]
 gi|116094879|gb|ABJ60031.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
           33323]
          Length = 115

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  +   H L+ + L++   +   +  K +    E     PS+ ++ K+    + +
Sbjct: 5   IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAE-----PSSGALAKLAEYFDVS 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
              LL    +    +   EK+  +L +            +   
Sbjct: 60  ADYLLGSDKTSEPKSVDLEKDPVVLSYGGRPVSEEDMDVIKAI 102


>gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1]
 gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1]
          Length = 140

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 31/136 (22%), Gaps = 6/136 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    +   LT   LA + G+   +  K +          P   +   +  A + +
Sbjct: 2   IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDST-----PDLANAGALAEALDVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPH 127
           +  L+               +                               +  +    
Sbjct: 57  LDALVGYDPHGTMLPMPPRGKHLFGTVTVGERWQIVIPKQARELFGIEAGDALLVLGDEE 116

Query: 128 NGIYAIQTQDTRHKTQ 143
            G+  ++  +   +  
Sbjct: 117 QGLAILKADEFMDRVS 132


>gi|52081992|ref|YP_080783.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580]
 gi|52787379|ref|YP_093208.1| Slr [Bacillus licheniformis ATCC 14580]
 gi|319647856|ref|ZP_08002074.1| slr protein [Bacillus sp. BT1B_CT2]
 gi|52005203|gb|AAU25145.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580]
 gi|52349881|gb|AAU42515.1| Slr [Bacillus licheniformis ATCC 14580]
 gi|317390197|gb|EFV71006.1| slr protein [Bacillus sp. BT1B_CT2]
          Length = 152

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 12/143 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    +R   + + LA  AG+  +  +K +R       R PS E + KI  A    
Sbjct: 2   IGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVH----RNPSVEFLKKISRALKVE 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF--------PTGNKWNTVGV 120
           + +L D      R TE++++    L           +   F             +    +
Sbjct: 58  LKELFDTEVILYRRTEQEDEWRTHLVQAVQAGMNQEELFQFTHRLKQKKKERALYRNREL 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQ 143
                       ++ ++     +
Sbjct: 118 TRANIDEWRALMLEAKEMGLTVK 140


>gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA]
 gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA]
          Length = 143

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 31/136 (22%), Gaps = 6/136 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    +   LT   LA + G+   +  K +          P   +   +  A + +
Sbjct: 5   IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDST-----PDLANAGALAEALDVS 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG-VPEIRSPH 127
           +  L+               +                               +  +    
Sbjct: 60  LDALVGYDPHGTMLPMPPRGKHLFGTVTVGERWQIVIPKQARELFGIEAGDALLVLGDEE 119

Query: 128 NGIYAIQTQDTRHKTQ 143
            G+  ++  +   +  
Sbjct: 120 QGLAILKADEFMDRVS 135


>gi|313898355|ref|ZP_07831892.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956737|gb|EFR38368.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 268

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             K+I   I    ++   T   LA K G+   + +K +R        +P    +  +  
Sbjct: 1  MQQKEIGMQISAARKKLKYTQRELAEKLGVSDKTISKWERGVG-----YPDISLLLPLCR 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
               + QLL    +D +    ++    L  + 
Sbjct: 56 ELGIEVSQLLGDEETDTQKQGNEKNLKNLADYA 88


>gi|294102133|ref|YP_003553991.1| hypothetical protein Amico_1144 [Aminobacterium colombiense DSM
           12261]
 gi|293617113|gb|ADE57267.1| hypothetical protein Amico_1144 [Aminobacterium colombiense DSM
           12261]
          Length = 91

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 151 YRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVE 208
                 +++N A +V  GD  L+   R  +   K +   +   S+++ S    Y      
Sbjct: 6   IPDRSTVVVNPAEEVYDGDTALVCFGRQNEWAIKWVYFNKADGSVEIRSAAPQYKPMVFT 65

Query: 209 MSDIE-----WIARI 218
             DIE      + ++
Sbjct: 66  KEDIELGLFCIVGKV 80


>gi|153004060|ref|YP_001378385.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp.
          Fw109-5]
 gi|152027633|gb|ABS25401.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 68

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +  +    + R+  +  L+   LA K G+  +  +  +R       R P  E+I K
Sbjct: 1  MDLLT--RFAGNVRRLRAKKKLSQKALADKVGISVSYVSMLERGQ-----RSPPLETIEK 53

Query: 61 ILAATNETI 69
          +  A     
Sbjct: 54 MAKALGVPP 62


>gi|120401822|ref|YP_951651.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954640|gb|ABM11645.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 176

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   I    E   ++   LA KAG+     ++ +R       R PS + + +I  A  
Sbjct: 16  QDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRKPSADVLNQIAKALR 70

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
            +   L         +   + ++  +    
Sbjct: 71  VSAEVLYVRAGILEPSETNEVRDAIVTDTA 100


>gi|298294446|ref|YP_003696385.1| hypothetical protein Snov_4510 [Starkeya novella DSM 506]
 gi|296930957|gb|ADH91766.1| hypothetical protein Snov_4510 [Starkeya novella DSM 506]
          Length = 259

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 68/237 (28%), Gaps = 43/237 (18%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            ++ EA+ +  E   + P+  A  AGL+    N   +    GR R    ++  K+  A  
Sbjct: 3   DELKEAVAKRVEELGIAPTPAAVGAGLERNFINDILQ----GRKRSVRGDNFVKLARALQ 58

Query: 67  ETICQLLDLPFSDG-----------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            T  +LL+                          +     I       +   G F     
Sbjct: 59  MTPAELLEATTLHSFKGGVVTPVKEEIRVTLSPGKPTPSPIAQARVQGAAQAGTFHRVDE 118

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILI------L 159
              ++   V VP         +A Q        +  SM          G  ++      L
Sbjct: 119 LEEDRDEWVNVPRD---EEFPFARQ---LVFDIRGDSMNKLEPVPLPDGSRVVTVAFEDL 172

Query: 160 NSAIQVNCGDRLLIKPR-----TGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMS 210
           ++ + +  G  ++++         +   K +     +      S N  +    +E  
Sbjct: 173 DNRVPLQDGMVVIVEQTLADGQVREWSCKQIEIHGEQVEFHPRSTNPRHKPIIIEPD 229


>gi|158339605|ref|YP_001520994.1| hypothetical protein AM1_A0344 [Acaryochloris marina MBIC11017]
 gi|158309846|gb|ABW31462.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 72

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + E   L+ S LARK  +  T+    +             E + ++    N T 
Sbjct: 1  MSNIKALREDRGLSQSQLARKMQMTETTIRNWEHGRTGVEW----FERVARLCEILNCTP 56

Query: 70 CQLLDLPF 77
            L     
Sbjct: 57 NDLFGYEE 64


>gi|332365977|gb|EGJ43733.1| transcriptional regulator [Streptococcus sanguinis SK1059]
          Length = 92

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 25 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 79

Query: 68 T 68
           
Sbjct: 80 N 80


>gi|317128356|ref|YP_004094638.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315473304|gb|ADU29907.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 111

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + R  +   +T + LA KAG+  +  +  +R         PS + + K+      +
Sbjct: 2   IGERVKRYRKEAGMTLTELADKAGVAKSYLSALERNIQT----NPSIQFLEKVANVLGLS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           I  LL     +    ++   +  +     + + G      
Sbjct: 58  IDYLLKDQVDNVSIVDEDIDKEWVNLVQEAMNSGVSKEEF 97


>gi|327191555|gb|EGE58568.1| putative transcriptional regulator protein, LacI family [Rhizobium
           etli CNPAF512]
          Length = 189

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 5/132 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I   I ++     LT   L+  +G+     ++ +R         P+   + +
Sbjct: 1   MEEQLEQAIGIRIRKLRLEKGLTLDDLSTASGVSRAMISRIERAEA-----SPTASLLAR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I AA   ++               +++ +                +    +      V  
Sbjct: 56  ICAALGLSLSAFFAEERQQASPLARRQDQQVWRDPETGYLRRSVSAPGTASDVDIVEVEF 115

Query: 121 PEIRSPHNGIYA 132
           P         +A
Sbjct: 116 PAGARVSFPPHA 127


>gi|324990569|gb|EGC22505.1| transcriptional regulator [Streptococcus sanguinis SK353]
 gi|325688320|gb|EGD30339.1| transcriptional regulator [Streptococcus sanguinis SK72]
          Length = 108

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95

Query: 68 T 68
           
Sbjct: 96 N 96


>gi|323356598|ref|YP_004222994.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323272969|dbj|BAJ73114.1| predicted transcriptional regulator [Microbacterium testaceum
           StLB037]
          Length = 197

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +  A+    +R  L+   L+ KAG+     ++ +R         PS +S+ ++  A  
Sbjct: 14  ETLGAAVRDARKRLGLSVQALSEKAGVSFGLVSQLERGLGN-----PSLQSLQRLAGALG 68

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
             + QLLD P        + ++ I  +      S       + P G 
Sbjct: 69  IPVAQLLDEPAVPLAVVTRAKRHIMPVAVDAPASQRAVRELLTPRGE 115


>gi|256811069|ref|YP_003128438.1| XRE family transcriptional regulator [Methanocaldococcus fervens
          AG86]
 gi|256794269|gb|ACV24938.1| transcriptional regulator, XRE family [Methanocaldococcus fervens
          AG86]
          Length = 64

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + + H +T   LA+  G+   +    ++   +     PS +   KI+      + 
Sbjct: 3  NRLRELRKEHGITQEELAKALGVTRQTIIAIEKGKYD-----PSLKLALKIVKFFGVKVE 57

Query: 71 QLLDLPF 77
           + +L  
Sbjct: 58 DVFELEE 64


>gi|212693058|ref|ZP_03301186.1| hypothetical protein BACDOR_02565 [Bacteroides dorei DSM 17855]
 gi|212664344|gb|EEB24916.1| hypothetical protein BACDOR_02565 [Bacteroides dorei DSM 17855]
          Length = 150

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             H  + +AID+      L+ S L RK G+     N+         +R      + K+ 
Sbjct: 4  DIKHVHVGQAIDKRRNELGLSKSELGRKIGVPQQHINRILERETMETSR------LIKVS 57

Query: 63 AATNETICQLLDLPFSDGRTT 83
           A +     L           
Sbjct: 58 EALDFNFFSLFCPKQHHISAH 78


>gi|150398499|ref|YP_001328966.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419]
 gi|150030014|gb|ABR62131.1| transcriptional regulator, XRE family [Sinorhizobium medicae
           WSM419]
          Length = 209

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 23/188 (12%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S + I E + ++ + + LT + LAR+  L P++ +K +   +      P+ ++I  + 
Sbjct: 14  PRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQM-----SPTYDTILSLA 68

Query: 63  AATNETICQLLDLPFSDGRTTEKK-------EKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                 + +L     +   +  +               Y               P     
Sbjct: 69  EGLGADVAELFARRQTTTVSGRRTINRAGDGVAHNTDQYDYQMLCTELAHKQFVPLKAII 128

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
                    S   G+ +   ++  +       L                ++ GD      
Sbjct: 129 KA----NSISRFGGMLSHSGEEFVYVLSGEIELHT------QFYAPTR-LHTGDSCYFDS 177

Query: 176 RTGDIVAK 183
             G  + K
Sbjct: 178 TMGHALLK 185


>gi|295133936|ref|YP_003584612.1| prophage LambdaCh01, repressor protein [Zunongwangia profunda
           SM-A87]
 gi|294981951|gb|ADF52416.1| putative prophage LambdaCh01, repressor protein [Zunongwangia
           profunda SM-A87]
          Length = 251

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 22/222 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I ++     L+    A    L   +    +    E     P  E+I KI    + TI
Sbjct: 5   GKNIRKIRNVKKLSQQAFAELFELKRGTLGAYEEERSE-----PRIETIIKIANHFSITI 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIRSP 126
             LL    +  +  + K+       F                 +           E    
Sbjct: 60  DDLLTQELTVNKLLKFKDDLALQGSFHKEKFAEIPCITPKTEADYILYYDKPHFIEDLPK 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP---LYRKGDILILNSAIQVNCGDR-------LLIKPR 176
            +       +   +   +  M      Y   D++I     +V+  D        L+I   
Sbjct: 120 LHLPVDPDKEYRAYLISNLEMTNNDKAYCPKDVVI---GEKVDPNDFTKIDTSSLVIALV 176

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            G ++ +         I L + N       +E  +I+ +  +
Sbjct: 177 HGKVLFRKFYY-SSSKIILRANNTNIEDIEIESGEIKEMWHV 217


>gi|317484279|ref|ZP_07943203.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316924460|gb|EFV45622.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 272

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            H  I   I    +   L+   LA+  G+   S  K +          P  + + ++  
Sbjct: 3  RKHLNIGGKIQARRKAMGLSQEDLAQLTGVSRQSVTKWETGQS-----APDLDRLVEVSD 57

Query: 64 ATNETICQLLDLPFSDGRTT 83
              ++  LL  P       
Sbjct: 58 VLGVSLDFLLREPQQVSSPP 77


>gi|148259560|ref|YP_001233687.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326402766|ref|YP_004282847.1| Xre family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|146401241|gb|ABQ29768.1| putative transcriptional regulator, XRE family [Acidiphilium
           cryptum JF-5]
 gi|325049627|dbj|BAJ79965.1| Xre family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 203

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 58/191 (30%), Gaps = 17/191 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + RM +   LT   LAR+AG+   + +  ++  +      PS  S+ KIL     +
Sbjct: 25  VGARLRRMRQIFGLTQRELARRAGVTNGAISLIEQGRV-----SPSISSLKKILDGIPMS 79

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +   L  +          ++  + F    S       +     +              
Sbjct: 80  LAEFFTLDLTAPEDVFFTAADLTEIAFDERISFRMVGRRLKDRALQMLHETYSPGADTGE 139

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            +   + ++     +   +        + + +    +  G+    + R          + 
Sbjct: 140 AMLRHEGEEAGVIIRGRIV--------VTVGDQERTLGAGEAYYFRSRIPH----RFRNP 187

Query: 189 RGRSIDLMSLN 199
                +++S N
Sbjct: 188 FDEVCEVISAN 198


>gi|291008215|ref|ZP_06566188.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 201

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 16/159 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I  A+ R  +R  L+ + LA++AG+  ++ ++ +          PS E+++ +  A  
Sbjct: 25  EIISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGN-----PSVETLWALAVALG 79

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L+D P    R     +            +         P G + +   +      
Sbjct: 80  VPFSRLVDPPRPQVRIVRAGQATFVR---SEQSTYAAALLSSCPAGARRDLYLLELEPGG 136

Query: 127 HNGIYA-IQT-------QDTRHKTQDTSMLPLYRKGDIL 157
                A I            R +    S L     GD +
Sbjct: 137 VRDAQAHIPGTVEHVVLTAGRMRVGPESNLVEIGPGDYV 175


>gi|134098587|ref|YP_001104248.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133911210|emb|CAM01323.1| possible DNA-binding protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 186

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 16/159 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I  A+ R  +R  L+ + LA++AG+  ++ ++ +          PS E+++ +  A  
Sbjct: 10  EIISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGN-----PSVETLWALAVALG 64

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L+D P    R     +            +         P G + +   +      
Sbjct: 65  VPFSRLVDPPRPQVRIVRAGQATFVR---SEQSTYAAALLSSCPAGARRDLYLLELEPGG 121

Query: 127 HNGIYA-IQT-------QDTRHKTQDTSMLPLYRKGDIL 157
                A I            R +    S L     GD +
Sbjct: 122 VRDAQAHIPGTVEHVVLTAGRMRVGPESNLVEIGPGDYV 160


>gi|317122090|ref|YP_004102093.1| XRE family transcriptional regulator [Thermaerobacter marianensis
          DSM 12885]
 gi|315592070|gb|ADU51366.1| transcriptional regulator, XRE family [Thermaerobacter
          marianensis DSM 12885]
          Length = 216

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I  +  +  ++   LAR++G+     ++ +        R PS + I +I  A   
Sbjct: 2  EVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPA----RKPSVDVILRIATALGV 57

Query: 68 TICQ 71
          ++ +
Sbjct: 58 SLTE 61


>gi|288924207|ref|ZP_06418242.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288344443|gb|EFC78937.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 208

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  +   I  + ++  L+ + LAR+AGL   + +K ++         P+ +++F I +A 
Sbjct: 13  HAVVARNIRLLRQQRGLSLAELARQAGLAKQTLSKLEQSSGN-----PTVDTLFSIASAL 67

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              + +L+             ++   +++    G        V+ +G   N V
Sbjct: 68  GVPVTRLVAEREQIVAV----QRASDVVWQHHDGHEVRLLDHVYGSGVIENYV 116


>gi|308174255|ref|YP_003920960.1| post-exponential-phase response transcriptional regulator [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607119|emb|CBI43490.1| transcriptional regulator for post-exponential-phase response
           [Bacillus amyloliquefaciens DSM 7]
 gi|328912595|gb|AEB64191.1| transcriptional regulator for post-exponential-phase response
           [Bacillus amyloliquefaciens LL3]
          Length = 113

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 4   IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           +  LLD         +   +   L+    +          F    KW
Sbjct: 60  VHTLLDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLEYQKW 106


>gi|311111417|ref|ZP_07712814.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus gasseri MV-22]
 gi|311111482|ref|ZP_07712879.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus gasseri MV-22]
 gi|311066571|gb|EFQ46911.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus gasseri MV-22]
 gi|311066636|gb|EFQ46976.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus gasseri MV-22]
          Length = 112

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  +   H L+ + L++   +   +  K +    E     PS+ ++ K+    + +
Sbjct: 2   IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAE-----PSSGALAKLAEYFDVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
              LL    +    +   EK+  +L +            +   
Sbjct: 57  ADYLLGSDKTSEPKSVDLEKDPVVLSYGGRPVSDEDMDVIKAI 99


>gi|332184077|gb|AEE26331.1| hypothetical protein FN3523_1028 [Francisella cf. novicida 3523]
          Length = 265

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 74/271 (27%), Gaps = 66/271 (24%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   SH KI      + ++  +T   LA K G+   +  K  +         P+     +
Sbjct: 1   MNM-SHIKI-----ELRKK-GITQKELAEKLGITTNAIQKWFKGET-----SPTMNRYLQ 48

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--------------------LYFPPSGS 100
           IL     T  +          T      +  +                           +
Sbjct: 49  ILDILGITTGEAEMYKLGRTSTGNIIHSQRTVDGDITNLAVSNNKGIVGSNNSNIAFGKN 108

Query: 101 GGFFDSGVFPTGNK---------------------WNTVGVPEIRSPHNGIYAIQTQDTR 139
                +   P+ +                       ++V +      HN  +A +   T 
Sbjct: 109 SNVSINSDAPSNDGSLASIPVIKREDILDFKNAKRIDSVAMKLPADKHNKCFAFEYTGTD 168

Query: 140 HKTQDTSMLPL-----YRKGDILILNSAIQVNC----GDRLLIKPRTGDIVAKVLISRRG 190
            +    SMLP         G  + ++ +         GD ++       +  +VL +   
Sbjct: 169 MRYDTNSMLPAYSYYSIDDGSKIFVDISKDAINSLTSGDLVVCIAD-NKVNVRVLYNDGY 227

Query: 191 RSIDLMSLNC--CYPVDTVEMSDIEWIARIL 219
            +  LM LN          E+S  + + R+ 
Sbjct: 228 DT-TLMPLNSIAQNKDQNKELSKNKIVGRVF 257


>gi|257792132|ref|YP_003182738.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476029|gb|ACV56349.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 247

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 11/74 (14%)

Query: 1  MTSFSHK------KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          M+  S K      +I + +  M      +   LA + GL   + +K +R         P 
Sbjct: 1  MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAES-----SPD 55

Query: 55 TESIFKILAATNET 68
          T ++  +      +
Sbjct: 56 TGNLIALAKLYGVS 69


>gi|269956326|ref|YP_003326115.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305007|gb|ACZ30557.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 145

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I    ER  L+ + LAR+AG+ P++ +  +        R  S   + ++L A       
Sbjct: 3   NIRHARERAGLSQAELARRAGIAPSNLSAIESGT-----RPASAAMVNRLLDAMGRPSVA 57

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-----GVFPTGNKWNTVGVPEIRSP 126
           L +       T E+     P ++   +       S          G  W+ V +P + S 
Sbjct: 58  LREHRDEVMATIERLGGSDPRVFGSVARGEDGPGSDIDLLVRAVPGRTWDFVTLPRVLSD 117

Query: 127 HNGI 130
             G+
Sbjct: 118 LLGV 121


>gi|73748044|ref|YP_307283.1| hypothetical protein cbdb_B7 [Dehalococcoides sp. CBDB1]
 gi|73659760|emb|CAI82367.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
          Length = 77

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +   I   +  + ER  LT    A K G+   + N+ +    +      + + I K+ 
Sbjct: 1  MKNQADIPRLVQELRERMGLTQEKFAAKLGVTYPTINRWENGRAKPSP--LAMKQIEKLT 58

Query: 63 AATNETICQ 71
              E    
Sbjct: 59 KGLGERGRD 67


>gi|323494352|ref|ZP_08099464.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis
           LMG 20546]
 gi|323311515|gb|EGA64667.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis
           LMG 20546]
          Length = 180

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/198 (9%), Positives = 56/198 (28%), Gaps = 32/198 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + +  +     L+   LA+++G+  +  ++ ++  +      PS  S+ KIL A   
Sbjct: 2   DVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVN-----PSVGSLKKILDAIPI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-------KWNTVGV 120
           ++ +   +          + K+            G     +   G               
Sbjct: 57  SMGEFFTIE--------IEAKDDIFFTVDQMADLGDGKIKMLLVGAKREGRQLAILREFY 108

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P            + ++     +    +         + +    +  GD    + +    
Sbjct: 109 PPGSDTGPDFLQHEGEEGGVVIRGEIEI--------TVGSKTQVLKAGDSYYFETKKPH- 159

Query: 181 VAKVLISRRGRSIDLMSL 198
                 ++     +L+S 
Sbjct: 160 ---RFRNKGKVECELISA 174


>gi|322830791|ref|YP_004210818.1| XRE family transcriptional regulator [Rahnella sp. Y9602]
 gi|321165992|gb|ADW71691.1| transcriptional regulator, XRE family [Rahnella sp. Y9602]
          Length = 188

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/145 (8%), Positives = 36/145 (24%), Gaps = 6/145 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +H  I   +  +      + S  A   G+      + +R         P+  +++K
Sbjct: 1   MQELTH-HIGSQLKAVRSERGWSLSQTAEHTGVSKAMLGQIERGES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I +  N +  + L+ P +      +                                + +
Sbjct: 55  IASGLNVSFSEFLETPPAQSAALHRHGLLTTFNSDTSGMRVVPLFPFDTTLRMDMFVIDL 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145
                  +  +     +     +  
Sbjct: 115 EPGGCSESTPHEAGVIEHVIVIEGE 139


>gi|317488245|ref|ZP_07946813.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA]
 gi|316912657|gb|EFV34198.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA]
          Length = 197

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  + E   LT   LA   G+   + +K +R G       P  E +  +       
Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGG-----CPDIELLPGLSERLGTP 60


>gi|315651060|ref|ZP_07904094.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
           3986]
 gi|315486650|gb|EFU76998.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
           3986]
          Length = 166

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E I R+ +   LT   +A+K G+   SF + +R         P  +++  I  A +
Sbjct: 3   KSMGENIKRIRKSKGLTQKEVAKKLGISQQSFAQYERIDAI-----PKFKTLQNIADALD 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            ++  ++     D      +  +    +      G    +     G+
Sbjct: 58  VSVGDIIYDGPKDKSRYLIEFTKYLYDHGFKYEYGDESLAAFMGIGD 104


>gi|257791038|ref|YP_003181644.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257474935|gb|ACV55255.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 197

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  + E   LT   LA   G+   + +K +R G       P  E +  +       
Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGG-----CPDIELLPGLSERLGTP 60


>gi|315223186|ref|ZP_07865047.1| helix-turn-helix protein [Streptococcus anginosus F0211]
 gi|315187618|gb|EFU21372.1| helix-turn-helix protein [Streptococcus anginosus F0211]
          Length = 81

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    H K+   +  +  R  L  + LA+KAG+   + +  +R         PS     K
Sbjct: 1  MKGEEHMKLENRLKELRARDRLNQTELAKKAGVSRQTVSLIERGEY-----APSIIIALK 55

Query: 61 ILAATNETICQLLDLPFS 78
          I     E +  +  L  +
Sbjct: 56 IAHIFGENVENVFYLKEN 73


>gi|300117591|ref|ZP_07055374.1| DNA-binding protein [Bacillus cereus SJ1]
 gi|298725026|gb|EFI65685.1| DNA-binding protein [Bacillus cereus SJ1]
          Length = 181

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA++A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|291484905|dbj|BAI85980.1| transcriptional regulator [Bacillus subtilis subsp. natto
          BEST195]
          Length = 113

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 4  IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          +  LLD         +   +   L+   
Sbjct: 60 VHTLLDEKHETEYDGQLDSEWEKLVRDA 87


>gi|228967552|ref|ZP_04128578.1| hypothetical phagelike protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792131|gb|EEM39707.1| hypothetical phagelike protein [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 177

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 14/171 (8%)

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           I + L  +   +    +  +           E    YFP S S G        T     T
Sbjct: 5   IAQALDISINDLFPPTNEVYKANNQIISLVNESDYTYFPTSISAGLPIQVDGMTEMDLET 64

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKP 175
           + +P+      G +A +      +    SM  +     ++ +      ++   D ++   
Sbjct: 65  IRIPDSL---MGKWAGREDIFMTRVNGDSMNKVIPHSSLIAVKEVTLEELYDNDMVVFSN 121

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP----VDTVEMSD---IEWIARIL 219
                V +    +  + +        Y       TV   D   I+   +++
Sbjct: 122 GCDYCVKRFFNDKENKRLIFRPD--SYDNCFFDYTVSYEDAANIKIHGKVV 170


>gi|254511384|ref|ZP_05123451.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221535095|gb|EEE38083.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 196

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +++ E + +  E+  L+   L+ +AG+  +  +K +   ++   R  S  +I   L 
Sbjct: 6  EQVAETLRKAREQKGLSQRALSARAGVPQSHISKIENNTVD--LRTSSLTAIAHALD 60


>gi|154686724|ref|YP_001421885.1| SinR [Bacillus amyloliquefaciens FZB42]
 gi|154352575|gb|ABS74654.1| SinR [Bacillus amyloliquefaciens FZB42]
          Length = 113

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 4  IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          +  LLD         +   +   L+   
Sbjct: 60 VHTLLDEKHETEYDGQLDSEWEKLVRDA 87


>gi|153940900|ref|YP_001392913.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936796|gb|ABS42294.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295320889|gb|ADG01267.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 220

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 14/217 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAAT 65
           ++ + I     +  LT   LA+K G+     N+ +           +  S  + K +   
Sbjct: 3   RVSDKIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGKGINDI 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  + + L      +  K  K   +     S          +      +   +P + +
Sbjct: 63  GISFEEEVSLEPKRETSINKDNKIKDVWDNAFSSIIKDVPVYNYNLDRVIDKKQLPVVGN 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
              GI+  Q +    K ++  M      KGDI       ++       +         + 
Sbjct: 123 KVEGIH--QDKVLFLKIEEEDMSGFRINKGDIAFGYMHHEMENNSI-FLIEHNNKRSVRQ 179

Query: 185 LISRRGRSIDL----MSLNCCYPVDTVEMSDIEWIAR 217
           L    G  I L    +SL      + V + DI+ IA+
Sbjct: 180 LKRLDGDKILLINNGISL----RTEAVRLKDIKIIAK 212


>gi|186471163|ref|YP_001862481.1| XRE family transcriptional regulator [Burkholderia phymatum STM815]
 gi|184197472|gb|ACC75435.1| transcriptional regulator, XRE family [Burkholderia phymatum
           STM815]
          Length = 189

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 6/136 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I   I    E    + + LA K+G+     +K +R         P+   + K+  A  
Sbjct: 10  QRIGARIRAEREGRGWSLTSLAEKSGVSRAMVHKVERGES-----SPTASLLAKLAGAFG 64

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++  LL L   +     ++ ++   +                   N    + +P     
Sbjct: 65  MSMSALLALAELEDGRLLRRAEQPLWVDPQSGYVRRHVSPKSASPLNLVE-IDLPPSTEI 123

Query: 127 HNGIYAIQTQDTRHKT 142
                A          
Sbjct: 124 PMPASAYLHSQQLIWV 139


>gi|84686686|ref|ZP_01014578.1| hypothetical protein 1099457000242_RB2654_00590 [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84665360|gb|EAQ11838.1| hypothetical protein RB2654_00590 [Rhodobacterales bacterium
          HTCC2654]
          Length = 199

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          + I E++    ER  ++   L+ KAG+  +  +K +   ++   R  S   + ++L 
Sbjct: 6  EHIAESLKAARERKGISQRALSAKAGVPQSHISKIENGAVD--LRLSSLVELARVLD 60


>gi|290959392|ref|YP_003490574.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260648918|emb|CBG72032.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 156

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 36/156 (23%), Gaps = 12/156 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1   MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG-------FFDSGVFPTGN 113
           +  A   +   L           ++ E E   +                           
Sbjct: 56  VAKALRISAETLYVRAGILDAERDRDEVETRAVILADPTLNERQKQVLLQIYESFRKENG 115

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP 149
               + +               +            P
Sbjct: 116 FEIDIDLGPGAETDPEAPPAPGRAPHAAGDGDDAGP 151


>gi|195873244|ref|ZP_02696881.2| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197264542|ref|ZP_03164616.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|195634360|gb|EDX52712.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197242797|gb|EDY25417.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 185

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 8   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 62  IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 122 TPHKAGVVEH 131


>gi|191639701|ref|YP_001988867.1| Transcriptional regulator, xre family [Lactobacillus casei BL23]
 gi|190714003|emb|CAQ68009.1| Transcriptional regulator, xre family [Lactobacillus casei BL23]
 gi|327383814|gb|AEA55290.1| Transcriptional regulator [Lactobacillus casei LC2W]
          Length = 185

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+  S   +   + ++ +   +T S LA    +   + +  +    +     P  ++I +
Sbjct: 1  MSDLS---LGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQ-----PDLQTICR 52

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE 89
          + +    T+  L+          ++    
Sbjct: 53 LASYYQLTVDDLIHQQSVPCADDQRPITW 81


>gi|194445981|ref|YP_002040851.1| XRE family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404644|gb|ACF64866.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 178

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHKAGVVEH 124


>gi|118587639|ref|ZP_01545049.1| putative DNA-binding protein [Stappia aggregata IAM 12614]
 gi|118439261|gb|EAV45892.1| putative DNA-binding protein [Stappia aggregata IAM 12614]
          Length = 185

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 7/137 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPS 54
           M++     +   +  +    N     LA++ G+   + ++ +R          G+     
Sbjct: 1   MSNLDQD-LARRLTDLRRARNWPLEELAKRTGISRATLSRVERGDTSPTANVLGKLASAF 59

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             S+ ++  + + T+ +L+        T  +       L    SG  G    G  P G  
Sbjct: 60  GLSMAELFGSASSTVERLVPREAQAVWTDPETGYTRRTLTPAASGYRGAMIEGCIPAGAT 119

Query: 115 WNTVGVPEIRSPHNGIY 131
                 P     H  + 
Sbjct: 120 VAYAAPPVPDLEHQLVL 136


>gi|326790508|ref|YP_004308329.1| hypothetical protein Clole_1405 [Clostridium lentocellum DSM 5427]
 gi|326541272|gb|ADZ83131.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427]
          Length = 159

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ +   ++   LA  +GL  +   + +     G+   PS E++  I    +  +
Sbjct: 3   GEKLKQLRKEKKISQKELAELSGLSISYIQQIE----SGKKNNPSLEALTAIAKVLDTPM 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             LLD    + +     ++ I  L         +    
Sbjct: 59  YHLLDESMKEYKDEFYFKQCIDWLRPILIDEPEYASEE 96


>gi|323486025|ref|ZP_08091356.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
 gi|323400592|gb|EGA92959.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
          Length = 216

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 6/136 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I ++ +   LT   L +K G+   + +  +    E     P++E++ ++      ++
Sbjct: 5   GNIIKQLRKEAGLTQGELGKKLGVVKQTISSWENNVSE-----PNSETLSELSKLFGVSV 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-EIRSPHN 128
            QL D    +      K      +           +            VG   E +  + 
Sbjct: 60  AQLYDHGVPNIDYANFKMDTPEFVLDFKMRIRDLMEEQKMSEDEFAQRVGFHKEEKDAYL 119

Query: 129 GIYAIQTQDTRHKTQD 144
               + + +   K   
Sbjct: 120 YGNKMPSIEDLIKIAG 135


>gi|320106693|ref|YP_004182283.1| XRE family transcriptional regulator [Terriglobus saanensis
          SP1PR4]
 gi|319925214|gb|ADV82289.1| transcriptional regulator, XRE family [Terriglobus saanensis
          SP1PR4]
          Length = 71

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   I  +     LT   LA   G+   + N  +     G    P+ E+ F+I    
Sbjct: 4  RIRNNIRNLRAEAGLTQQELADLIGVTRQTVNAIE-----GDKYSPTLEAAFRIAEVL 56


>gi|260892045|ref|YP_003238142.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260864186|gb|ACX51292.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 118

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +  + + ++ +R  L    +AR  G++ ++    +R   +     PS E++ K+      
Sbjct: 3  RFGDTLKQLRQRMGLRQDDVARMVGVERSTVANWERGVKQ-----PSLETLVKLSQLFGV 57

Query: 68 TICQ 71
          ++ +
Sbjct: 58 SLDE 61


>gi|257875583|ref|ZP_05655236.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257809749|gb|EEV38569.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 293

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H+ + + +     RHNLT   LA +  +   + +K +R         P  E++ ++    
Sbjct: 2  HESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNG-----LPDIETLVRLADLL 56

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
             + +LL           K E+ +  L  
Sbjct: 57 GTPVEELLKEKKETYYYEYKSERTVLRLPL 86


>gi|257865956|ref|ZP_05645609.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257872289|ref|ZP_05651942.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257799890|gb|EEV28942.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257806453|gb|EEV35275.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 293

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H+ + + +     RHNLT   LA +  +   + +K +R         P  E++ ++    
Sbjct: 2  HESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNG-----LPDIETLVRLADLL 56

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
             + +LL           K E+ +  L  
Sbjct: 57 GTPVEELLKEKKETYYYEYKSERTVLRLPL 86


>gi|308067835|ref|YP_003869440.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305857114|gb|ADM68902.1| Putative HTH-type transcriptional regulator [Paenibacillus
          polymyxa E681]
          Length = 115

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+    + +   I  + +   L+   LA KAG + +     +R       R  S +++ K
Sbjct: 1  MSELL-ELVGTRIRDIRKSKGLSQEALAEKAGFNSSYIGFIERAE-----RNISLKNLEK 54

Query: 61 ILAATNETICQ 71
          I  A N  + Q
Sbjct: 55 IAKALNVGVYQ 65


>gi|289825657|ref|ZP_06544828.1| transcriptional regulator, XRE family protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 185

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 8   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 62  IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 122 TPHKAGVIEH 131


>gi|153815596|ref|ZP_01968264.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC
          27756]
 gi|317501623|ref|ZP_07959815.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331088574|ref|ZP_08337485.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145847027|gb|EDK23945.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC
          27756]
 gi|295100105|emb|CBK89194.1| Predicted transcriptional regulator [Eubacterium cylindroides
          T2-87]
 gi|316896966|gb|EFV19045.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330407531|gb|EGG87031.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 223

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA K G++  S +K +R        +P+ +++ KI+     T
Sbjct: 11 LGENIQIIRKHRGMKQQELANKIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLGVT 65

Query: 69 ICQLLDLPFSDGRTTEK 85
            +LL   +     TE 
Sbjct: 66 PNELLSGEWKYIDHTEP 82


>gi|33866161|ref|NP_897720.1| peptidase S26 family protein [Synechococcus sp. WH 8102]
 gi|33639136|emb|CAE08142.1| Possible peptidase S26 family protein [Synechococcus sp. WH 8102]
          Length = 125

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRS 192
            +    K Q  SMLP     D +++N   +   G+ ++     + G  + K +       
Sbjct: 19  GRRQLLKVQGESMLPHLGPEDRILVNQRRRPQPGEVVVAWHPSKPGVRLIKRMHGMDANG 78

Query: 193 IDLMSLNCC 201
           + L+  N  
Sbjct: 79  MHLLGDNPS 87


>gi|88856689|ref|ZP_01131345.1| putative regulatory protein [marine actinobacterium PHSC20C1]
 gi|88814150|gb|EAR24016.1| putative regulatory protein [marine actinobacterium PHSC20C1]
          Length = 195

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 5/133 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + R  +  NLT   LA+  G+  ++ ++ +        R PS E +  ++AA + 
Sbjct: 13  QIAPRLRRARQNKNLTLDDLAQATGISKSTLSRLESGQ-----RKPSLELLLPVVAALSV 67

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + Q++  P        +K          P             T    +          +
Sbjct: 68  PLDQIVTSPRIADPRVAQKSTRADGRMLTPLSQHLGKPQAFKITIAATDGEPTLRTHGGY 127

Query: 128 NGIYAIQTQDTRH 140
             IY ++ +    
Sbjct: 128 EWIYVLEGRLRLV 140


>gi|293414771|ref|ZP_06657420.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185]
 gi|291434829|gb|EFF07802.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185]
          Length = 178

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA   G+      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPH 127
           +  P S   +    +++  ++                     G    +    +    H
Sbjct: 67  ISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEH 124


>gi|229488922|ref|ZP_04382788.1| regulatory protein [Rhodococcus erythropolis SK121]
 gi|229324426|gb|EEN90181.1| regulatory protein [Rhodococcus erythropolis SK121]
          Length = 208

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 5/133 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + R+  + N+T + L+   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 27  QIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGE-----RRPSLELLLPIALAHQV 81

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + QL+  P       +   + +      P             T     T   P++   +
Sbjct: 82  PLDQLVAAPQVADPRIQSAPRSVSGRTVLPLTRQPGGLQAFKMTIPASQTEPDPQVHDGY 141

Query: 128 NGIYAIQTQDTRH 140
             +Y +  +    
Sbjct: 142 EWLYVLSGRLRLV 154


>gi|329117060|ref|ZP_08245777.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326907465|gb|EGE54379.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 183

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           + R+ ++  L+   LA++ G+   + +  +         +P+  ++ KI    N +   
Sbjct: 8  NLIRLRKQKGLSQKELAQELGISSQTISNIENQSA-----YPTFTNLEKIAGFFNASPTD 62

Query: 72 LLDLPFSDG 80
          L   P    
Sbjct: 63 LFGTPQQIQ 71


>gi|204927953|ref|ZP_03219154.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323295|gb|EDZ08491.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322634804|gb|EFY31535.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|323243422|gb|EGA27441.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
          Length = 185

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 8   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 62  IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 122 TPHKTGVIEH 131


>gi|288560390|ref|YP_003423876.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
 gi|288543100|gb|ADC46984.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
          Length = 113

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI + +  + E   L+ S LA   G+     ++ +        R  +   + K+ A   
Sbjct: 2  KKIGQRLQGLRESKGLSQSDLANYLGISQPLLSQIEAGN-----RNLNLSLLDKLCALYG 56

Query: 67 ETICQLLDLPFSDGRTTEK 85
           T   +L            
Sbjct: 57 CTDSYILCKDDEYNAVNFS 75


>gi|302523303|ref|ZP_07275645.1| regulatory protein [Streptomyces sp. SPB78]
 gi|318062276|ref|ZP_07980997.1| regulatory protein [Streptomyces sp. SA3_actG]
 gi|318080822|ref|ZP_07988154.1| regulatory protein [Streptomyces sp. SA3_actF]
 gi|302432198|gb|EFL04014.1| regulatory protein [Streptomyces sp. SPB78]
          Length = 219

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 37/132 (28%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +  + +   +T + L+   G+  ++ ++ +        R P+ E +  +  A    
Sbjct: 36  VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESG-----LRRPTLELLLPLARAHRVA 90

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+            +          P                  +    P     + 
Sbjct: 91  LDELVGTRPVADPRVRAEPIVRHHRRMYPLSRHPGGVQAYRMVIEGGSRDPEPRTHEGYE 150

Query: 129 GIYAIQTQDTRH 140
            +Y +  +    
Sbjct: 151 WMYVLHGRLRVV 162


>gi|332653080|ref|ZP_08418825.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332518226|gb|EGJ47829.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 208

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 52/190 (27%), Gaps = 10/190 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + R+ +   L+   +AR   +   + +K +    E     P  +++  +      T
Sbjct: 20  LGENLQRLRKEKGLSQEDVARALFVSRQTISKWETDKAE-----PGVDNLKALADLYEVT 74

Query: 69  ICQ-----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           + Q            +       ++   +     +       +G    G  +  +     
Sbjct: 75  LDQLTGRARTGTDSKESHEQTPSDQYRTMALIRLAVWLAVAAAGQLHGGEPFQVLAFAGT 134

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                   ++  +             L      +    A Q+  G   +       I  K
Sbjct: 135 LGSAAVFLSLWFRSIYVWGGILCGEGLSILASAICTICAEQLASGMISVGLAAMLGIWVK 194

Query: 184 VLISRRGRSI 193
            L S+  R +
Sbjct: 195 YLTSQSVRQL 204


>gi|220922470|ref|YP_002497772.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219947077|gb|ACL57469.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 211

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 70/218 (32%), Gaps = 37/218 (16%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
           ++ +R  +    L+   GL   + ++          R    + + +I A    +      
Sbjct: 9   QLRDRR-IPQKALSSAIGLSEDAVSRMLSG-----KRTIKADELKRICAFLGVSPP---- 58

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
                  T +   +++  +      + G F    +     ++   +P +  P     AI 
Sbjct: 59  ------LTAQLPARDVSYVKVVGEVAAGAFVDMQYVDFVDYD---IPYVADPRWPKEAIT 109

Query: 135 TQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNC---GDRLLIKPRTG---DIVAKVLIS 187
                +  +  S+    R GD +I+ ++         GD ++++ R G   +   K +  
Sbjct: 110 ----AYIVRGESINRQARDGDHIIVLDANAAPRPYQLGDWVVVEQRCGDLVETTVKQV-R 164

Query: 188 RRGRSIDLMSLNCC---YPVDTVE---MSDIEWIARIL 219
               + +L   +          V      ++  I  +L
Sbjct: 165 GSEGAWELWPDSNDGRFQRPLVVAGDGGDNVRVIGFVL 202


>gi|156934075|ref|YP_001437991.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532329|gb|ABU77155.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894]
          Length = 191

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I E I    E    + S LA +AG+     +K +R         P+   + ++  A 
Sbjct: 9   NQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAL 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             ++  L+     +     +   + P+ + P S       S           V +P    
Sbjct: 64  GLSMSTLIARAEMNEGRLLR-FADQPVWHDPQSHYLRRHVSPKSDLPLDMVQVELPAGSD 122

Query: 126 PHNGIYAIQTQDTRHKTQ 143
                 A          Q
Sbjct: 123 IPMPASAYAFARQLIWVQ 140


>gi|125717610|ref|YP_001034743.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK36]
 gi|125497527|gb|ABN44193.1| Transcriptional regulator, XRE family, putative [Streptococcus
          sanguinis SK36]
          Length = 70

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 3  QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 57

Query: 68 T 68
           
Sbjct: 58 N 58


>gi|260588066|ref|ZP_05853979.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|260541593|gb|EEX22162.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
          Length = 107

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I  A+    +  N+T   LA K G+     ++ +        R PS + I ++      
Sbjct: 40 DIIRAMVAARKERNMTQKELAEKTGITQADISRIENGT-----RNPSLDMIKRLAKGMGM 94


>gi|255654357|ref|ZP_05399766.1| DNA-binding protein [Clostridium difficile QCD-23m63]
          Length = 364

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 59/198 (29%), Gaps = 14/198 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +    +   +T   LA   G+   S +K +         +P    + ++    N 
Sbjct: 5   NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQS-----YPDITFLPQLATYFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T+ +L+       +    K        F        FD  +                   
Sbjct: 60  TVDELICYEPQMMKEDINKLYNKLCKDFTAK----PFDEVMIEIREIIKRYYSCFPLIFR 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
            G+  +   D      +     L  +   + +      N  D    + +  +    +L++
Sbjct: 116 MGLLIVNHYDI---VDEKKRELLIDEALEIFIRIQETCNDIDIC-RQAKNMEATCYILLN 171

Query: 188 RRGRSIDLMSLNCCYPVD 205
           +  + IDL+  N  +P+ 
Sbjct: 172 QPIQVIDLLQ-NSNFPMI 188


>gi|170739100|ref|YP_001767755.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193374|gb|ACA15321.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46]
          Length = 183

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           ++ ++   +  +   H L+   LARKAG+  ++ +  +          PS  ++ +IL 
Sbjct: 1  MTNDEVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTN-----PSVGALKRILD 55

Query: 64 ATNETICQLL 73
          A    + +  
Sbjct: 56 AVPIGLAEFF 65


>gi|170742021|ref|YP_001770676.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196295|gb|ACA18242.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46]
          Length = 183

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           ++ ++   +  +   H L+   LARKAG+  ++ +  +          PS  ++ +IL 
Sbjct: 1  MTNDEVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTN-----PSVGALKRILD 55

Query: 64 ATNETICQLL 73
          A    + +  
Sbjct: 56 AVPIGLAEFF 65


>gi|168186644|ref|ZP_02621279.1| helix-turn-helix domain protein [Clostridium botulinum C str.
          Eklund]
 gi|169295453|gb|EDS77586.1| helix-turn-helix domain protein [Clostridium botulinum C str.
          Eklund]
          Length = 210

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + E I  +    NLT S LA+ AG+   +    +R       R P+ + +  I  A  
Sbjct: 2  NLGERIKMLRLEKNLTQSELAKIAGISRVAIGNYERGT-----RIPNIDILLNISKALG 55


>gi|78044374|ref|YP_359408.1| AraC family transcriptional regulator [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996489|gb|ABB15388.1| transcriptional regulator, AraC family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 257

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ E   LT + LA +AG+ P    + ++  ++     PS ++I K+      T C  
Sbjct: 143 LKKLREDMGLTQAELASQAGVSPGLIGQIEQGKVQ-----PSLKTIEKLAEVLGTTPCYF 197



 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          I  + E   LT + L++KAGL  +  ++ +R      ++ PS ++I KI  A N    Q
Sbjct: 8  IRELREERGLTLNELSKKAGLSISYLSEIERG-----SKKPSLKTIDKIAKALNVNKAQ 61



 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  + E   LT S LA + G+  +  ++ +R  +      PS  ++ +I      +
Sbjct: 74  LGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVN-----PSVATLRRIAEELGVS 128

Query: 69  ICQLLDLPF 77
           +  L+    
Sbjct: 129 VADLMGKEH 137


>gi|73669575|ref|YP_305590.1| XRE family transcriptional regulator [Methanosarcina barkeri str.
           Fusaro]
 gi|72396737|gb|AAZ71010.1| transcriptional regulator, XRE family [Methanosarcina barkeri str.
           Fusaro]
          Length = 186

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 15/124 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + +     + +      LT S LA++AG+      + +   ++     P   ++ K
Sbjct: 1   MQLPTPED----LKKRRNELGLTQSDLAKRAGVSQPLIARIESGDVD-----PRLSTVRK 51

Query: 61  ILAATNETICQLL------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           IL A  E   +                +     +E+  L      S         P G+ 
Sbjct: 52  ILDAFEEVEKEQQIIIIDLMHSPVIHVSPGDSVEEVVNLMQKYGFSQVPVLDRGIPVGSV 111

Query: 115 WNTV 118
              +
Sbjct: 112 SEDM 115


>gi|328958145|ref|YP_004375531.1| transcriptional regulator for post-exponential-phase response
           [Carnobacterium sp. 17-4]
 gi|328674469|gb|AEB30515.1| transcriptional regulator for post-exponential-phase response
           [Carnobacterium sp. 17-4]
          Length = 180

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  +  + NLT   LA +  L     ++ +R         PS E  F IL     
Sbjct: 2   EIGNRIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSV-----PSMEVFFDILEVLGC 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           +     D    + R     ++              +    
Sbjct: 57  SPKDFFDEKQEEQRVVYTNDEMTVYEDDEKGYEIKWLVPE 96


>gi|147677406|ref|YP_001211621.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146273503|dbj|BAF59252.1| hypothetical transcriptional regulator [Pelotomaculum
           thermopropionicum SI]
          Length = 255

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + E + LT + LA  AG+      + ++  ++     PS +++ KI      T C  
Sbjct: 143 LRALREEYGLTQAQLASMAGVTAGLIGQIEQGKVQ-----PSLKTLEKIAEVMGVTPCYF 197

Query: 73  LDLPF 77
           +    
Sbjct: 198 IMESG 202



 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           E I  + E    T   LAR+  L  +  ++ +R      ++ PS ++I K+ AA N
Sbjct: 5  GEQIRALREERGYTLQDLARRTNLSLSYLSEIERG-----SKRPSLKTIDKLAAALN 56



 Score = 41.3 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + + I  +    N++   LA+ +G+  +  ++ +R  +     +P+  ++ +I A  
Sbjct: 74  LGDKIRMLRAEKNMSLQELAQASGISLSYLSEIERGTV-----YPALTTLKRIAAGL 125


>gi|325830857|ref|ZP_08164241.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325487264|gb|EGC89707.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 197

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  + E   LT   LA   G+   + +K +R G       P  E +  +       
Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGG-----CPDVELLPGLSERLGTP 60


>gi|264679683|ref|YP_003279590.1| prophage repressor [Comamonas testosteroni CNB-2]
 gi|262210196|gb|ACY34294.1| putative prophage repressor [Comamonas testosteroni CNB-2]
          Length = 80

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              GDI++++ A++   G  ++      D   KVL    G    L + N  YP    + +
Sbjct: 6   IDDGDIIVVDRALRARHGSIVVALLD-NDFTVKVLH-NAGGCFKLRAGNPTYPDIVPKEN 63

Query: 211 DIEWIARIL 219
               I  ++
Sbjct: 64  QELEIWGVV 72


>gi|172058533|ref|YP_001814993.1| XRE family transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991054|gb|ACB61976.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum
           255-15]
          Length = 181

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 5/99 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  +  +  LT   L  +  L     ++ +R         PS E++F +L     +
Sbjct: 4   IGNKIKNLRLQKGLTQEELGERTDLSKGYISQIEREIS-----SPSIETLFSLLEVLGIS 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                D    + +    ++               +    
Sbjct: 59  AKDFFDEDTLNQKVVYSQKDVTRYEDPEQGYHVTWLIPE 97


>gi|327398988|ref|YP_004339857.1| helix-turn-helix domain-containing protein [Hippea maritima DSM
          10411]
 gi|327181617|gb|AEA33798.1| helix-turn-helix domain protein [Hippea maritima DSM 10411]
          Length = 72

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +    K+ + I ++     L+   LARKA +  T+  K +     G  + PS   + K
Sbjct: 1  MENNQGNKLGKKIKKLRTGLGLSQDELARKADVPYTTLTKIE----TGVIKKPSVYVVAK 56

Query: 61 ILAATNETICQ 71
          I  A N TI +
Sbjct: 57 IAKALNITIEE 67


>gi|289642892|ref|ZP_06475027.1| putative phage repressor [Frankia symbiont of Datisca glomerata]
 gi|289507275|gb|EFD28239.1| putative phage repressor [Frankia symbiont of Datisca glomerata]
          Length = 118

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV-LISRRGRSIDLMS 197
                  SM P  R GD  ++   +    GD ++ +     +  K         S  L S
Sbjct: 20  MVSVSGRSMTPTLRDGDACVVLWGMSPRVGDVVVARLPGRGLGVKRAAFVEPDGSWWLRS 79

Query: 198 LN----CCYPVD-TVEMSDIEWIARIL 219
            N           +V   D+  + R++
Sbjct: 80  DNVAAGTDSATFGSVPAEDV--LGRVI 104


>gi|257896190|ref|ZP_05675843.1| peptidase S24 [Enterococcus faecium Com12]
 gi|293377191|ref|ZP_06623399.1| signal peptidase I [Enterococcus faecium PC4.1]
 gi|257832755|gb|EEV59176.1| peptidase S24 [Enterococcus faecium Com12]
 gi|292644211|gb|EFF62313.1| signal peptidase I [Enterococcus faecium PC4.1]
          Length = 183

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 38/108 (35%), Gaps = 15/108 (13%)

Query: 115 WNTVGVPEIRSPHNG--IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            +   +       +G   + ++         +  SM  + ++GD++++    ++   D +
Sbjct: 8   IDRFWLIFKYLLVSGFIAFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIV 67

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + +   G I  K +I   G               + +   ++   +++
Sbjct: 68  VFQLADGTIYIKRVIGLPG------------ENVSYQNDQLKINGKVV 103


>gi|16760275|ref|NP_455892.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141958|ref|NP_805300.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213021706|ref|ZP_03336153.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213052213|ref|ZP_03345091.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213416599|ref|ZP_03349743.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426252|ref|ZP_03359002.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582138|ref|ZP_03363964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|25512933|pir||AG0668 probable DNA-binding protein STY1459 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502570|emb|CAD01720.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137587|gb|AAO69149.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 178

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHKAGVIEH 124


>gi|237725545|ref|ZP_04556026.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436232|gb|EEO46309.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 153

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             H  + +AID+      L+ S L RK G+     N+         +R      + K+ 
Sbjct: 4  DIKHVHVGQAIDKRRNELGLSKSELGRKIGVPQQHINRILERETMETSR------LIKVS 57

Query: 63 AATNETICQLLDLPFSDGRTT 83
           A +     L           
Sbjct: 58 EALDFNFFSLFCPKQHHISAH 78


>gi|229172472|ref|ZP_04300031.1| Transcriptional regulator, MerR [Bacillus cereus MM3]
 gi|228610943|gb|EEK68206.1| Transcriptional regulator, MerR [Bacillus cereus MM3]
          Length = 181

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA  AG+ P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|160893206|ref|ZP_02073994.1| hypothetical protein CLOL250_00752 [Clostridium sp. L2-50]
 gi|156865289|gb|EDO58720.1| hypothetical protein CLOL250_00752 [Clostridium sp. L2-50]
          Length = 493

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 54/167 (32%), Gaps = 15/167 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S  ++ + I R+ ++ ++T + LA + G++ +  ++ ++         PS   +  
Sbjct: 1   MKKLSTAQLADTIIRLRKQQHMTQAQLAAETGINRSLVSRMEKQDF-----MPSIGQLEA 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK--------EIPLLYFPPSGSGGFFDSGVFPTG 112
           +    +  I +L          +    K            +    +         + P  
Sbjct: 56  LGDVLHFDITELFISDLPVKYPSPSPLKIAIAGTGYVGLSIATLLAQHNHVTAVDIIPEK 115

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
                     I+  +   Y  +       T D +M   Y+  D +++
Sbjct: 116 VDMINRHQSPIQDEYIEKYLAEKDLDLTATTDGAM--AYKDADFVVI 160


>gi|317050874|ref|YP_004111990.1| helix-turn-helix domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945958|gb|ADU65434.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5]
          Length = 101

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 1   MTSF---SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           MT F   + + + + +  + +   LT   LA+ AG+  ++ + ++        R    E+
Sbjct: 1   MTQFFAPTPEYLGKTLQALRKAKGLTQEELAKLAGVKQSTVSHAENNT-----RGMRIET 55

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
           ++ +LAA +  +        +  +   +            +    F
Sbjct: 56  LYSLLAALDLYLNLRPRQDQARAKEEWQGNSAETFSPQIFADGRRF 101


>gi|257887696|ref|ZP_05667349.1| peptidase S24 [Enterococcus faecium 1,141,733]
 gi|257823750|gb|EEV50682.1| peptidase S24 [Enterococcus faecium 1,141,733]
          Length = 183

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 38/108 (35%), Gaps = 15/108 (13%)

Query: 115 WNTVGVPEIRSPHNG--IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            +   +       +G   + ++         +  SM  + ++GD++++    ++   D +
Sbjct: 8   IDRFWLIFKYLLVSGFIAFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIV 67

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           + +   G I  K +I   G               + +   ++   +++
Sbjct: 68  VFQLADGTIYIKRVIGLPG------------ENVSYQNDQLKINGKVV 103


>gi|225388847|ref|ZP_03758571.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme
           DSM 15981]
 gi|225045122|gb|EEG55368.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme
           DSM 15981]
          Length = 201

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 14/185 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT       W  I    ++   T + +AR+ G      ++ +R   E     PS  ++ K
Sbjct: 1   MTMN-----WNRIREERKKKGYTLAQVARETGYSIGYISQLERNQKE-----PSLAALRK 50

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL---LYFPPSGSGGFFDSGVFPTGNKWNT 117
           I A    +   L+    ++   +   +++ P                   +    + +  
Sbjct: 51  IAACLGCSEVYLIMGQENETAVSHSPDQDTPYGPGYILRRDQRVPMKIPEIDTAYSIFTP 110

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
             +P+   P      +  +       +T +L       +LI    ++V+ G  +      
Sbjct: 111 DRLPDNHKPCMTGLFVTLKPGC-WVTETMILHQNMDETVLITEGQLEVHIGTHVYDAGTG 169

Query: 178 GDIVA 182
             +  
Sbjct: 170 DCLYI 174


>gi|302390463|ref|YP_003826284.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302201091|gb|ADL08661.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 181

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 7/138 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I E I ++ ++  LT   L+   GL  +  ++ +           +  S+ KI  A N
Sbjct: 3   NEIAEKISKLRKQKGLTLKELSEMTGLSVSFLSQVENGYS-----SLAITSLKKIADALN 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I +          +   K  E  +     + +     SG FP       +   +    
Sbjct: 58  VPITEFF--SSYHNHSYHIKLSEQKVFKIEGNSAEYVLLSGEFPKRTLEAMIVYIQPGEG 115

Query: 127 HNGIYAIQTQDTRHKTQD 144
               ++   ++  +  + 
Sbjct: 116 LGSKFSHPGEEFVYVLEG 133


>gi|237731580|ref|ZP_04562061.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907119|gb|EEH93037.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 191

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 14/148 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E    + + LA +AG+     +K +R         P+   + ++  A 
Sbjct: 9   NQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGES-----SPTATLLGRLSGAF 63

Query: 66  NETI--------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             ++         Q   L     +      +   L       S    D          + 
Sbjct: 64  GISMSTLIARAEMQEGKLLRFVDQPVWHDPQSHYLRRHVSPRSDLPIDLVQIELPAGSD- 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
           + +P              Q      +  
Sbjct: 123 IPMPASSYVQARQLIWLQQGELVFVEGD 150


>gi|225019713|ref|ZP_03708905.1| hypothetical protein CLOSTMETH_03666 [Clostridium methylpentosum
          DSM 5476]
 gi|224947558|gb|EEG28767.1| hypothetical protein CLOSTMETH_03666 [Clostridium methylpentosum
          DSM 5476]
          Length = 83

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              K I   I ++ +R  ++   L+  AGLD T ++K +R       R P+ +++FKI 
Sbjct: 1  MVDTKLIGAVIQQLRQRKGISQEVLSGLAGLDRTHYSKIERG-----LRSPTIDTLFKIG 55

Query: 63 AATNETIC 70
          +A      
Sbjct: 56 SALQMPPH 63


>gi|154174979|ref|YP_001409102.1| hypothetical protein CCV52592_0048 [Campylobacter curvus 525.92]
 gi|112803024|gb|EAU00368.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 228

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 55/203 (27%), Gaps = 28/203 (13%)

Query: 17  AERHNLTPSGLARKAG-----LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + T S L    G     +  ++  K        R    + +++ K +      + +
Sbjct: 14  IKELSYTYSDLVNVMGENGDFITESAIKKWFMKNNPIRPTIENIQALSKAIKVPLNELVE 73

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                            E      P   S   +D   + + + WN               
Sbjct: 74  QTIFENVSAVKEIPVVGEASC-GIPEPNSYQDYDQKTYCSADIWNE-------------- 118

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG- 190
                         SM  L  +GD +I +    +  GD +  +   G+   KV       
Sbjct: 119 ----DIYAVIASGDSMYDLIERGDEVICDPRADILSGDIVHYEFN-GESAIKVYFKEEKF 173

Query: 191 RSIDLMSLNC--CYPVDTVEMSD 211
             +  +  N    +   +  ++D
Sbjct: 174 GVVRFVPYNRSGEFKTLSFSVND 196


>gi|88854610|ref|ZP_01129277.1| predicted transcription regulator, containing DNA-binding HTH
          domain [marine actinobacterium PHSC20C1]
 gi|88816418|gb|EAR26273.1| predicted transcription regulator, containing DNA-binding HTH
          domain [marine actinobacterium PHSC20C1]
          Length = 73

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               K+   I  + E   LT + LAR+ G+   +    ++         P+ E  F+I 
Sbjct: 1  MVKPTKVTNNIRALREAEGLTQAELARRIGVTRQTLIAIEQGRY-----SPTLELAFQIS 55

Query: 63 AATNETICQLLDLP 76
                +  +   P
Sbjct: 56 RNFGTGLDDVFHYP 69


>gi|293399884|ref|ZP_06644030.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306284|gb|EFE47527.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 168

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + +KI E +  + ++  LT    A    +   + ++ +          P  + + +I  
Sbjct: 1  MNQQKIGEFLKELRKQKGLTQEQFAEIVNVSNRTVSRWENGNN-----LPDLDILIEISD 55

Query: 64 ATNETICQ 71
               + +
Sbjct: 56 YYEIDLRE 63


>gi|259047500|ref|ZP_05737901.1| Cro/CI family transcriptional regulator [Granulicatella adiacens
           ATCC 49175]
 gi|259035691|gb|EEW36946.1| Cro/CI family transcriptional regulator [Granulicatella adiacens
           ATCC 49175]
          Length = 180

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   +  +  +  LT   LA +  L     ++ +          PS ++ F IL     
Sbjct: 2   EIGHQLRALRIQKGLTQEELAERTDLSKGYISQLENDLS-----SPSMDTFFDILEVLGC 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                 D    +  T  ++E    +       +  + +  
Sbjct: 57  PAADFFDEGPEEALTIYREEDMTMMEDAKHHTTVTWLNPD 96


>gi|225575279|ref|ZP_03783889.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037475|gb|EEG47721.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM
           10507]
          Length = 341

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/107 (10%), Positives = 27/107 (25%), Gaps = 6/107 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFK 60
               +KI      + +++  +   LA K G+   S +K +               E    
Sbjct: 1   MLLSEKILT----LRKKNGWSQEELAEKCGVSRQSISKWEGNLSTPELSKIVLLSELFQV 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                 +   Q      ++    E     +  +    + +       
Sbjct: 57  STDYLLKEDVQPQTDTDAELPPMEAPSHSLRQVTLAEATAFIQAREQ 103


>gi|116496181|ref|YP_807915.1| XRE family transcriptional regulator [Lactobacillus casei ATCC
          334]
 gi|239630630|ref|ZP_04673661.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|301067783|ref|YP_003789806.1| XRE family transcriptional regulator [Lactobacillus casei str.
          Zhang]
 gi|116106331|gb|ABJ71473.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC
          334]
 gi|239526913|gb|EEQ65914.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|300440190|gb|ADK19956.1| Transcriptional regulator, xre family [Lactobacillus casei str.
          Zhang]
          Length = 185

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+  S   +   + ++ +   +T S LA    +   + +  +    +     P  ++I +
Sbjct: 1  MSDLS---LGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQ-----PDLQTICR 52

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE 89
          + +    T+  LL          ++    
Sbjct: 53 LASYYQLTVDDLLHQQSVPCADDQRPITW 81


>gi|324993316|gb|EGC25236.1| transcriptional regulator [Streptococcus sanguinis SK405]
 gi|325694019|gb|EGD35937.1| transcriptional regulator [Streptococcus sanguinis SK150]
 gi|327461585|gb|EGF07916.1| transcriptional regulator [Streptococcus sanguinis SK1]
 gi|327473309|gb|EGF18729.1| transcriptional regulator [Streptococcus sanguinis SK408]
 gi|327489444|gb|EGF21237.1| transcriptional regulator [Streptococcus sanguinis SK1058]
          Length = 108

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95

Query: 68 T 68
           
Sbjct: 96 N 96


>gi|291534410|emb|CBL07522.1| Helix-turn-helix [Roseburia intestinalis M50/1]
          Length = 242

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 12/120 (10%)

Query: 3   SFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             +   +I E I ++ +   L+ + LA+  G+  T +   +        + P TES  K+
Sbjct: 1   MLTNQDEIRERIIQIRKERGLSQNQLAKDFGISRTHYCNVENG------KKPVTESFLKV 54

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           LA+  +   +      +       +     +          F     +      +    P
Sbjct: 55  LASGYKIPMEAFIPNENGDLMQYCECTNDFVNAIIDEYFNSFEIRKYY-----IDEYEQP 109


>gi|297560986|ref|YP_003679960.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845434|gb|ADH67454.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 194

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 9/140 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IFKILAAT 65
           +   +  +  RH +T + L+   G+  ++ ++ +        R P  E    + K     
Sbjct: 12  VGPRLRALRHRHGITLTALSETTGIAVSTLSRLESGQ-----RRPGLELLLPLAKAYNVP 66

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            + +                    + ++    +  G      V P G   +    P    
Sbjct: 67  LDELVGAPANGDPRVYPRPTVRNGMTVIPLSRNPGGLQAFKQVLPAGP-DDLEPDPRSHE 125

Query: 126 PHNGIYAIQTQDTRHKTQDT 145
            ++ +Y +  +         
Sbjct: 126 GYHWLYVLSGRLRLVLGDQD 145


>gi|269957698|ref|YP_003327487.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269306379|gb|ACZ31929.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 102

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 25/54 (46%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          H+K+ +++ R  ++H LT + +A + G+   +    +R+            ++ 
Sbjct: 23 HEKLLDSLVRFRKKHGLTQADVAERMGVSQPTVAAFERYDANPTLSTIRRYALA 76


>gi|226308038|ref|YP_002767998.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226187155|dbj|BAH35259.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
           PR4]
          Length = 195

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 5/133 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + R+  + N+T + L+   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 14  QIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGE-----RRPSLELLLPIALAHQV 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + QL+  P       +   + +      P             T     T   P++   +
Sbjct: 69  PLDQLVAAPQVADPRIQSAPRSVSGRTVLPLTRQPGGLQAFKMTIPASQTDPDPQVHDGY 128

Query: 128 NGIYAIQTQDTRH 140
             +Y +  +    
Sbjct: 129 EWLYVLSGRLRLV 141


>gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica ATCC
           39073]
 gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica ATCC
           39073]
          Length = 178

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I ++     ++   +A K GL  +  ++ +R   +     PS  S+ KI  A +  
Sbjct: 2   LGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLAD-----PSITSLRKIAEALDIP 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I   L  P        K ++   +L FP S       S       +     +    +  +
Sbjct: 57  IFYFLLNPEDHSPVVRKDQR--KVLRFPQSHLTYELLSPDLNRNMEVMMARLEPGAASCD 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPL 150
              A   ++     Q    + +
Sbjct: 115 EPLAHPGEECIVVLQGVMEIDI 136


>gi|325685380|gb|EGD27486.1| XRE family transcriptional regulator [Lactobacillus delbrueckii
          subsp. lactis DSM 20072]
          Length = 122

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +  +  R  ++   LA   G+   + +  +        + P  +++ KI      +
Sbjct: 6  IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVEKIANIFGVS 60

Query: 69 IC 70
            
Sbjct: 61 RN 62


>gi|167549918|ref|ZP_02343676.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325107|gb|EDZ12946.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 178

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHKAGVIEH 124


>gi|325690086|gb|EGD32090.1| transcriptional regulator [Streptococcus sanguinis SK115]
          Length = 108

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95

Query: 68 T 68
           
Sbjct: 96 N 96


>gi|257439609|ref|ZP_05615364.1| toxin-antitoxin system, antitoxin component, Xre family
           [Faecalibacterium prausnitzii A2-165]
 gi|257197976|gb|EEU96260.1| toxin-antitoxin system, antitoxin component, Xre family
           [Faecalibacterium prausnitzii A2-165]
          Length = 212

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + EAI    +   LT   L+ + G+  T  +K +R         PS  ++ ++ A    
Sbjct: 149 VIEAILAARKESGLTQQQLSERTGIAQTDISKLERGNGN-----PSLRTLQRLAAGMGM 202


>gi|322614855|gb|EFY11780.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619297|gb|EFY16177.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623108|gb|EFY19950.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628399|gb|EFY25187.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322638630|gb|EFY35325.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640981|gb|EFY37628.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645436|gb|EFY41964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651679|gb|EFY48051.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654419|gb|EFY50741.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661261|gb|EFY57487.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665035|gb|EFY61223.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667779|gb|EFY63939.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671809|gb|EFY67930.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677145|gb|EFY73209.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680191|gb|EFY76230.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685379|gb|EFY81375.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194734|gb|EFZ79923.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199893|gb|EFZ84981.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204415|gb|EFZ89423.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205808|gb|EFZ90771.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213863|gb|EFZ98638.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218217|gb|EGA02928.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219101|gb|EGA03605.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223909|gb|EGA08207.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231997|gb|EGA16104.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234524|gb|EGA18611.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237976|gb|EGA22035.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323246445|gb|EGA30427.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253730|gb|EGA37557.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259005|gb|EGA42655.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260789|gb|EGA44393.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266543|gb|EGA50030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271267|gb|EGA54694.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 178

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHKTGVIEH 124


>gi|150398657|ref|YP_001329124.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419]
 gi|150030172|gb|ABR62289.1| transcriptional regulator, XRE family [Sinorhizobium medicae
           WSM419]
          Length = 197

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 13/131 (9%)

Query: 1   MTSFSHKKIWEAID--------RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
           M S   + +   +D         +    +LT   LA +AG+     ++ +R         
Sbjct: 1   MQSLIMENLGSQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEA-----S 55

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           P+ + + ++ +A   T+  L     S+     +++ +                     + 
Sbjct: 56  PTAQLLARLCSALGTTLSALFASGVSEASPLARRQDQRLWRDPESGYLRRSVSPEGVGSP 115

Query: 113 NKWNTVGVPEI 123
                V  P  
Sbjct: 116 IDIVEVEFPPG 126


>gi|269928755|ref|YP_003321076.1| hypothetical protein Sthe_2842 [Sphaerobacter thermophilus DSM
           20745]
 gi|269788112|gb|ACZ40254.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM
           20745]
          Length = 372

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 38/158 (24%), Gaps = 7/158 (4%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    +R  L+ S LA + GL   S    +R         P   ++  I       I  
Sbjct: 14  RLTLARKRRGLSISALAERVGLSRRSIFNYERGRSV-----PGDHTLATIAQTLGFPITF 68

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSPHNGI 130
                  +        + +  +            +      +  +    +P +  P    
Sbjct: 69  FFGNDIEELSPDAVSFRAMSKMTAAQRDMALAEGALALLIDSWIDERFELPPVDLPDLSH 128

Query: 131 YAIQTQ-DTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
                      +          R    L+ +  ++V  
Sbjct: 129 ETDPETAAIALRRYWGCGEWPIRNMVHLLESKGVRVFS 166


>gi|269468586|gb|EEZ80235.1| hypothetical protein Sup05_0706 [uncultured SUP05 cluster
          bacterium]
          Length = 131

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I   I +  E   L+   LA K G+  ++ ++ +       +  PS +++ K+    N
Sbjct: 2  KSIAIRIKQSRELKGLSQKELADKIGVSSSAISQYES--TSYFHSEPSVKNLIKLTKVLN 59

Query: 67 ETICQ 71
           +   
Sbjct: 60 VSFEW 64


>gi|227549950|ref|ZP_03979999.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM
          44291]
 gi|227077966|gb|EEI15929.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM
          44291]
          Length = 143

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG-IEGRNRWPSTESIFKILAATNE 67
          + E +  + E   L+   LA  AG+  +  +  +R      R+  P+  ++++I  A + 
Sbjct: 17 LAERLRALREMRGLSQRRLAELAGVSRSLISNLERNQYNTARSADPTLSTVYRIAHALHV 76

Query: 68 TI 69
            
Sbjct: 77 PP 78


>gi|194735253|ref|YP_002114629.1| transcriptional regulator, XRE family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197300747|ref|ZP_02660781.2| transcriptional regulator, XRE family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194710755|gb|ACF89976.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291093|gb|EDY30446.1| transcriptional regulator, XRE family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 185

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 8   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 62  IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 122 APHKAGVIEH 131


>gi|14251159|ref|NP_116527.1| cI repressor [Lactococcus phage BK5-T]
 gi|928836|gb|AAA98587.1| cI repressor [Lactococcus phage BK5-T]
 gi|26005556|emb|CAC80176.1| cI repressor [Lactococcus phage BK5-T]
          Length = 297

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 4/133 (3%)

Query: 90  IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-AIQTQDTRHKTQDTSML 148
             + Y P          G    G   + V   +   P    + +             SM 
Sbjct: 160 NTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSME 219

Query: 149 PLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
           P    G  +++ +   V  G    ++         K +       + L+S+N  +     
Sbjct: 220 PKIPYGAYVLIEAVPDVTDGTIGAVLFHDDCQATLKKVYHEID-CLRLVSINKEFKDQFA 278

Query: 208 EMSD-IEWIARIL 219
              +    I + +
Sbjct: 279 TQDNPAAVIGQAV 291


>gi|328554201|gb|AEB24693.1| transcriptional regulator SinR [Bacillus amyloliquefaciens TA208]
          Length = 111

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 2   IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           +  LLD         +   +   L+    +          F    KW
Sbjct: 58  VHTLLDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLEYQKW 104


>gi|322388685|ref|ZP_08062284.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
 gi|321140474|gb|EFX35980.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
          Length = 113

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + ++ +LT   LA++ G+  +S+   +R       + P+ E++ KI    + +
Sbjct: 5  ERLKELRKQAHLTQVELAKRLGIGQSSYADWERG-----KKKPTQENLVKIAQILDVS 57


>gi|297158498|gb|ADI08210.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 159

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGTLGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L             + +   ++
Sbjct: 56 LAKALRISAETLYVQAGILDERERDETETRSVI 88


>gi|260906368|ref|ZP_05914690.1| hypothetical protein BlinB_13653 [Brevibacterium linens BL2]
          Length = 180

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 11/137 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I  + E   +T + L+R AG+     ++ +R    G   + +   I K         
Sbjct: 2   GALIRSLRESAGMTLTDLSRMAGVSQGLLSQIERGR--GNPAYLTLLKIAKAFDVPVGRF 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPL--------LYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                 P  +      K +++ +        L  P             P G    +V   
Sbjct: 60  FGSGGEPADNRVVRADKRRQLQVTDRGLVYELLTPTMNGQLLVLKARIPAGYSNESVPF- 118

Query: 122 EIRSPHNGIYAIQTQDT 138
                   ++ ++    
Sbjct: 119 NHHRAEECLFVLEGTCY 135


>gi|261366338|ref|ZP_05979221.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|282571941|gb|EFB77476.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
          Length = 399

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I    ++  L+   LA + G+   +  K ++         PS +++  + AA + +
Sbjct: 3  LGENIQAARKKKGLSQEALAEQVGVSRQALGKWEKDTA-----LPSLDNLQALAAALDVS 57


>gi|332798069|ref|YP_004459568.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332695804|gb|AEE90261.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 190

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 50/158 (31%), Gaps = 8/158 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           +  I +  +   +T   LA KA +  +  ++ +R         PS  ++  I  A +  +
Sbjct: 12  YSRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLAN-----PSINTMKLIANALDVPL 66

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSPHN 128
            +       D R+     +    +Y P S    +        G      + +    S  +
Sbjct: 67  FKFFMEEEDDIRSQVVTPENRRRVYLPDSNGVIYELLTPDLAGTIEFCQLTLEPYMSTSD 126

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                + ++       T+ L        +I+ +   + 
Sbjct: 127 TPMGHEGEEVAIVISGTAEL--ILDDSKIIMEAGDSIR 162


>gi|323483037|ref|ZP_08088431.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum
          WAL-14163]
 gi|323403666|gb|EGA95970.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum
          WAL-14163]
          Length = 129

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I    +   +T   LA K G+   + +K +R        +P   S+ K+      ++ QL
Sbjct: 3  IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLS-----YPDVNSLPKLAGIFGISVDQL 57

Query: 73 LDLPFSDGRTTEKKEKEIPLLYF 95
          + +  +DG   ++      +   
Sbjct: 58 MQIKTNDGPVNDRPVANRIIPIV 80


>gi|291525173|emb|CBK90760.1| SOS-response transcriptional repressors (RecA-mediated
           autopeptidases) [Eubacterium rectale DSM 17629]
          Length = 85

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206
           M P +  G+I  ++    +  G+  +      +   K L       + L+SLN  Y    
Sbjct: 1   MEPEFHSGEIAWVSQQDTLCDGEIGI-FGLNNEAYIKKLKRY-ADRLYLVSLNSKYSPIE 58

Query: 207 VEMSD 211
           ++ SD
Sbjct: 59  IKESD 63


>gi|291294894|ref|YP_003506292.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279]
 gi|290469853|gb|ADD27272.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279]
          Length = 238

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 31/221 (14%)

Query: 2   TSFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
            S + + +       +    E+  L+   LA  AG+ P+   K ++   +   R  S   
Sbjct: 9   ASLTPENVTPDWGRLLQTRREKLGLSREALALAAGVSPSLIAKLEQGNHD--LRDVSVGR 66

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +L   +      L         T       PL Y+         +     T + ++T
Sbjct: 67  LHALLRTLHLPSIDFLLGEGPTEEFTPSAPGITPLPYYSSLTLACAGEEA--STRSHFDT 124

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
             +P   S  N   AI  QD        S      +G +L++            L+    
Sbjct: 125 RLLPTRPSYTNFFLAILEQDVL-----RSEDLSLVEGSVLVVER-KPARERGIALLGFVE 178

Query: 178 GDIVAKV--LISRRGR------------SIDLMSLNCCYPV 204
                +   L                     L+      P 
Sbjct: 179 E---IRRPLLYRLPPEPRLVRPVSGMGAVYWLLPDGSLQPP 216


>gi|28199642|ref|NP_779956.1| hypothetical protein PD1771 [Xylella fastidiosa Temecula1]
 gi|28057757|gb|AAO29605.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 141

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S + + + + + R+ E   L+   LA  +G+   S N    +G    ++ P   +I K
Sbjct: 16 MNSLAIRAVADNVRRLLEARRLSQKELAALSGVSQKSINDLLNYGGT-VSKEPRLGTIEK 74

Query: 61 ILAATNETICQ 71
          +         Q
Sbjct: 75 LAKGFGIATWQ 85


>gi|325570037|ref|ZP_08145962.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus
          ATCC 12755]
 gi|325156865|gb|EGC69036.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus
          ATCC 12755]
          Length = 293

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H+ + + +     RHNLT   LA +  +   + +K +R         P  E++ ++    
Sbjct: 2  HETLSKKLKDYRSRHNLTQKELAARLFVSDKAISKWERGNG-----LPDIETLVRLADLL 56

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
             + +LL           K E+ +  L  
Sbjct: 57 GTPVEELLKEKKETYYYEYKSERRVLRLPL 86


>gi|16079517|ref|NP_390341.1| transcriptional regulator for post-exponential-phase response
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310384|ref|ZP_03592231.1| SinR [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314708|ref|ZP_03596513.1| SinR [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221319631|ref|ZP_03600925.1| SinR [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323907|ref|ZP_03605201.1| SinR [Bacillus subtilis subsp. subtilis str. SMY]
 gi|296333382|ref|ZP_06875835.1| transcriptional regulator SinR [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305675112|ref|YP_003866784.1| transcriptional regulator for post-exponential-phase response
          [Bacillus subtilis subsp. spizizenii str. W23]
 gi|321311945|ref|YP_004204232.1| transcriptional regulator SinR [Bacillus subtilis BSn5]
 gi|134504|sp|P06533|SINR_BACSU RecName: Full=HTH-type transcriptional regulator sinR
 gi|4389349|pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX
 gi|143547|gb|AAA22757.1| Sin regulatory protein (ttg start codon) [Bacillus subtilis]
 gi|1303886|dbj|BAA12542.1| SinR [Bacillus subtilis]
 gi|2634895|emb|CAB14392.1| transcriptional regulator for post-exponential-phase response
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|296149580|gb|EFG90476.1| transcriptional regulator SinR [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305413356|gb|ADM38475.1| transcriptional regulator for post-exponential-phase response
          [Bacillus subtilis subsp. spizizenii str. W23]
 gi|320018219|gb|ADV93205.1| transcriptional regulator SinR [Bacillus subtilis BSn5]
          Length = 111

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 2  IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          +  LLD         +   +   L+   
Sbjct: 58 VHTLLDEKHETEYDGQLDSEWEKLVRDA 85


>gi|319940112|ref|ZP_08014466.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus
          1_2_62CV]
 gi|319810826|gb|EFW07153.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus
          1_2_62CV]
          Length = 169

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I  + +    +   LA K  +   S +K +    +          + KI   T
Sbjct: 2  QINKRIFELRKERGWSQDQLAEKVNVSRQSISKWES--AQALPEIEKVIELSKIFQVT 57


>gi|311069063|ref|YP_003973986.1| transcriptional regulator SinR [Bacillus atrophaeus 1942]
 gi|310869580|gb|ADP33055.1| transcriptional regulator SinR [Bacillus atrophaeus 1942]
          Length = 111

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 2  IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLKKVSAVLDVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          +  LLD         +   +   L+   
Sbjct: 58 VHTLLDEKHETEYDGQLDSEWEKLVRDA 85


>gi|325833019|ref|ZP_08165646.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485736|gb|EGC88201.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 242

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +  M      +   LA + GL   + +K +R         P T ++  +      
Sbjct: 14 EIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAES-----SPDTGNLIALAKLYGV 68

Query: 68 TICQ 71
          ++  
Sbjct: 69 SLDD 72


>gi|294790815|ref|ZP_06755973.1| DNA-binding protein [Scardovia inopinata F0304]
 gi|294458712|gb|EFG27065.1| DNA-binding protein [Scardovia inopinata F0304]
          Length = 373

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          +I   I ++     +T   LA   G+   + +K +    
Sbjct: 5  QIGRNISQLRREKGITQEELAEYLGVSKPAVSKWESGQS 43


>gi|320008611|gb|ADW03461.1| nickel-type superoxide dismutase maturation protease [Streptomyces
           flavogriseus ATCC 33331]
          Length = 145

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTG 178
           PE         A +      +    SM+P    GD+L++     V  GD ++++   +  
Sbjct: 2   PEPAEEPWSGRAARRPFQVVEVTGPSMVPTLYHGDLLLVQRGAPVRPGDVVILRHPLQQD 61

Query: 179 DIVAKVLISRRGRSIDLMSLNC 200
            +V K    RR     ++  N 
Sbjct: 62  LLVVKRASERRDGGWWVLGDNS 83


>gi|154502629|ref|ZP_02039689.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC
          29149]
 gi|153796821|gb|EDN79241.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC
          29149]
          Length = 125

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          HK+I   I  + E++N + + LA +  L  +  +  +        R  S ESI +I+ A 
Sbjct: 10 HKQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENA-----KRKASLESIIRIVNAL 64

Query: 66 NETICQLLDLPFSDGRTTE 84
            T+ +LL        T  
Sbjct: 65 GITVDELLAGVQLHNPTAY 83


>gi|153814290|ref|ZP_01966958.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC
          27756]
 gi|145848686|gb|EDK25604.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC
          27756]
          Length = 125

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          HK+I   I  + E++N + + LA +  L  +  +  +        R  S ESI +I+ A 
Sbjct: 10 HKQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENA-----KRKASLESIIRIVNAL 64

Query: 66 NETICQLLDLPFSDGRTTE 84
            T+ +LL        T  
Sbjct: 65 GITVDELLAGVQLHNPTAY 83


>gi|56750781|ref|YP_171482.1| transcriptional regulator [Synechococcus elongatus PCC 6301]
 gi|56685740|dbj|BAD78962.1| transcriptional regulator [Synechococcus elongatus PCC 6301]
          Length = 132

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I  + +R  L+ + LA   G+DP +    +R              + K+  A + +   
Sbjct: 54  NIAALRKRTGLSQTQLANIVGVDPVTIRNWERGRSGLDW----FVKLAKLCEALDCSPRD 109

Query: 72  LLDLPFSDGRTTEKKEKE 89
           L+  P S+ +   +   E
Sbjct: 110 LVKDPDSESKKVPRTVNE 127


>gi|313124538|ref|YP_004034797.1| transcriptional regulator (xre family) [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|312281101|gb|ADQ61820.1| Putative transcriptional regulator (Xre family) [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
          Length = 122

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +  +  R  ++   LA   G+   + +  +        + P  +++ KI      +
Sbjct: 6  IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVEKIANIFGVS 60

Query: 69 IC 70
            
Sbjct: 61 RN 62


>gi|308186159|ref|YP_003930290.1| hypothetical protein Pvag_0639 [Pantoea vagans C9-1]
 gi|308056669|gb|ADO08841.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea
           vagans C9-1]
          Length = 187

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 44/167 (26%), Gaps = 11/167 (6%)

Query: 1   MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST---- 55
           MT   + +++   +  +  +   +   L+   G+   + ++ +R          +     
Sbjct: 1   MTELNTEQRLAVRLAELRLQRGWSLDELSVATGISRATLSRIERSETSPTAALLNRLCVA 60

Query: 56  --ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
              ++ ++L+   E    L+          +        +  P          G    G 
Sbjct: 61  YGLTMSRLLSEVEEESRLLVRNEQQPVWQDDASGFVRRNISPPAVHFRCELVEGKLRPGA 120

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
           + +    P      +                 S     + GD L  +
Sbjct: 121 RIDYDAPPIQGLEQHIWLREGG----LTVTMGSQAWTLQPGDCLRFH 163


>gi|260890727|ref|ZP_05901990.1| toxin-antitoxin system, antitoxin component, Xre family
           [Leptotrichia hofstadii F0254]
 gi|260859605|gb|EEX74105.1| toxin-antitoxin system, antitoxin component, Xre family
           [Leptotrichia hofstadii F0254]
          Length = 203

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 48/191 (25%), Gaps = 11/191 (5%)

Query: 1   MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M      +   E +  + ++ NLT  GLA K G+      K ++         PS E++ 
Sbjct: 1   MAKTKFKENFKEILKELRKKKNLTQRGLAEKTGISLAMITKYEQGLNT-----PSIENLR 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +      +I   L+      R  +    E        +      D            + 
Sbjct: 56  VLADFFKVSIRNFLEEDRDRDRVFKVFLSEEEASIDIENYDSSTNDKKFLSISKGRQYIY 115

Query: 120 VP---EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC--GDRLLIK 174
                            +      ++ D   +         +      +     D   + 
Sbjct: 116 HILKFLEAVGFEIYIDEKQNIFNIRSSDPKYIMNIYWTINNLQFQIQFLRNIIIDYSYMF 175

Query: 175 PRTGDIVAKVL 185
            +  D   K +
Sbjct: 176 FKDMDNHIKKI 186


>gi|182420050|ref|ZP_02951284.1| DNA-binding protein [Clostridium butyricum 5521]
 gi|237669498|ref|ZP_04529478.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376087|gb|EDT73674.1| DNA-binding protein [Clostridium butyricum 5521]
 gi|237654942|gb|EEP52502.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 222

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 10/216 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I +  E+  LT   LA+K G+     N+ +         +   +   K+L A   
Sbjct: 3   RVGENIKKAREKSGLTVKALAKKLGVAEKYLNEVEMGRKVAPESF--IDKAAKVLKADLN 60

Query: 68  T------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                     L++   +     ++K     +     S          +          +P
Sbjct: 61  DISMVVTDNDLMEEKKTFKELPKRKNDSNEVWTDAFSSVLRNVPIYNYSLTKNNGNKEMP 120

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              +   G    Q +    + +D  M+        L     ++    +   +    G   
Sbjct: 121 VHSNKIEGY--PQDKVFYIQIEDDEMIGFRMLKGDLAFAHIVKELNNNGFFLIEYNGKRK 178

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            + +       + L+S +     +T+E+ DI  IA+
Sbjct: 179 IRQVKILGNSKVLLVSNSGSLLTETMEVRDINVIAK 214


>gi|294632875|ref|ZP_06711434.1| DNA-binding protein [Streptomyces sp. e14]
 gi|292830656|gb|EFF89006.1| DNA-binding protein [Streptomyces sp. e14]
          Length = 190

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 10/179 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I     R  +  + LA ++GL     ++ +R         PS  SI+KI  A +  
Sbjct: 13  VGSVIRGHRRRLGVPMAELAARSGLSQPFLSQLERGLTT-----PSLASIYKIADALSLP 67

Query: 69  ICQLLDLPFSDGRTTEKK-EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               L    +      ++  + I +       +      G       +     P      
Sbjct: 68  PGIFLRPSSTSDTVAHEEDPQVIRVTEGTGQFAHVLIPGGQSDVMEAYEQHFTPGQ--GE 125

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVL 185
            G +    +D  +  +   +    R  + + L +    +  GD        G+  A+ L
Sbjct: 126 RGWFEHTGEDFIYVLEGE-VALELRGEEPIRLRAGQSAHHRGDVPHRCRLVGETAARTL 183


>gi|213857689|ref|ZP_03384660.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 178

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHKAGVIEH 124


>gi|149195750|ref|ZP_01872807.1| hypothetical protein LNTAR_17698 [Lentisphaera araneosa HTCC2155]
 gi|149141212|gb|EDM29608.1| hypothetical protein LNTAR_17698 [Lentisphaera araneosa HTCC2155]
          Length = 726

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 19/101 (18%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIK-------PRTGDIVAKV 184
                 +    SM P      + +      +        +L            G +  K 
Sbjct: 620 QDMFVLRVVGKSMEPKIPDNSLCVFRKGSALAGSRQNRIMLFYLHDDSDPNDGGRLTVKK 679

Query: 185 LISRRG--------RSIDLMSLNCCYPVDTVEM-SDIEWIA 216
             S++          SI L +LN  Y    +     I  I 
Sbjct: 680 YHSQKSQTEEGWQHGSISLQALNPDYQNIEISEGEQISVIG 720


>gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 101

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 6/99 (6%)

Query: 1  MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M     H  + + I +  +   +T   LA K G+     ++ +R          +   + 
Sbjct: 1  MKMKQDHLLVGKRIQKRRKELGMTAVKLAEKIGISQQQLSRYERGINR-----INLSHLV 55

Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          +I +     I                 +     +    +
Sbjct: 56 QIASILETPINWFFLDCSYPASNNSINKLTDQYIPIAEA 94


>gi|331270313|ref|YP_004396805.1| signal peptidase I [Clostridium botulinum BKT015925]
 gi|329126863|gb|AEB76808.1| signal peptidase I [Clostridium botulinum BKT015925]
          Length = 174

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPR 176
           +P   +    ++  +    + K   TSM P  + GD ++   ++S   ++ GD ++   +
Sbjct: 12  IPIGLALFLALFIWKFIGFQVKVPSTSMYPTIKPGDHILITRVHSEKSLHRGDIVVFYSK 71

Query: 177 -TGDIVAKVLISRRGRSIDLMSL 198
              + + K L+   G  + + S 
Sbjct: 72  ERNETMIKRLMGLPGDKVSITSD 94


>gi|320160947|ref|YP_004174171.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1]
 gi|319994800|dbj|BAJ63571.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1]
          Length = 206

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + +  + E  N++   LAR +GL   + +  +R         PS  ++ K+  A   
Sbjct: 12  DVGQRLRALREERNISIRALARLSGLSANALSMIERGMT-----SPSVSTLNKLAIALKV 66

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            +               +K  E   + F      G       
Sbjct: 67  PVTAFFRTMPVKEAVVFRKASERTRIPFLRGMMEGLGGEHFI 108


>gi|294630087|ref|ZP_06708647.1| PbsX family transcriptional regulator [Streptomyces sp. e14]
 gi|292833420|gb|EFF91769.1| PbsX family transcriptional regulator [Streptomyces sp. e14]
          Length = 230

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 11  MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 65

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           +  A   +   L           ++ E E   +    
Sbjct: 66  VAKALRISAETLYVRAGILDAERDRDEVETRAVILAD 102


>gi|260892586|ref|YP_003238683.1| helix-turn-helix domain protein [Ammonifex degensii KC4]
 gi|260864727|gb|ACX51833.1| helix-turn-helix domain protein [Ammonifex degensii KC4]
          Length = 349

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I        L+   LA K G+   + +K +R         P +  + ++  A   
Sbjct: 10 QIGLRIKEARLSRGLSLRALAEKVGVSAQAISKYERGLDI-----PGSGVLLRLAEALGV 64

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
               +     +      +++ 
Sbjct: 65 KWEYFIRPRRVECLEPAYRKRS 86


>gi|167917954|ref|ZP_02505045.1| helix-turn-helix protein [Burkholderia pseudomallei BCC215]
          Length = 107

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  + +   LT   LA  AG+  +   + +    +     PS E + K+      
Sbjct: 4  RLGAKLRELRKEKGLTLEKLAELAGMSKSYVWELENRESQ----RPSAEKLTKLADVLGV 59

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
               ++          + E        
Sbjct: 60 AASYFIEEDVRKPEERHRDEAFFRNYKT 87


>gi|327468930|gb|EGF14402.1| transcriptional regulator [Streptococcus sanguinis SK330]
          Length = 108

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 95

Query: 68 T 68
           
Sbjct: 96 N 96


>gi|257898827|ref|ZP_05678480.1| peptidase S24 [Enterococcus faecium Com15]
 gi|293570270|ref|ZP_06681339.1| signal peptidase I [Enterococcus faecium E980]
 gi|257836739|gb|EEV61813.1| peptidase S24 [Enterococcus faecium Com15]
 gi|291609677|gb|EFF38938.1| signal peptidase I [Enterococcus faecium E980]
          Length = 183

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            + ++         +  SM  + ++GD++++    ++   D ++ +   G I  K +I  
Sbjct: 25  AFMLRGFLFIPVPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIKRVIGL 84

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G               + +   ++   +++
Sbjct: 85  PG------------ENVSYQNDQLKINGKVV 103


>gi|260589804|ref|ZP_05855717.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583]
 gi|260539845|gb|EEX20414.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583]
          Length = 336

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +R   +   LA K G+   S +K +     G    P    I K+      +
Sbjct: 3  LADKIVNLRKRAGWSQEELAEKMGVSRQSISKWE-----GAQSVPDMNRILKLSEVFCVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
             LL     +        +E   L     
Sbjct: 58 TDYLLRDDIEEVPCIVNPLEEAEPLEDSKG 87


>gi|37783322|gb|AAP44573.1| unknown protein [Lactobacillus sakei]
          Length = 165

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 18 ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +   L+ + LA K G+   + +  +R       R+P+ ES+ K     + T  Q
Sbjct: 6  KEMGLSQTELAEKIGVQKQTISNIERGI-----RYPTFESLEKFATVFHATPIQ 54


>gi|170020794|ref|YP_001725748.1| CI repressor [Escherichia coli ATCC 8739]
 gi|169755722|gb|ACA78421.1| CI repressor [Escherichia coli ATCC 8739]
          Length = 189

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 53/210 (25%), Gaps = 40/210 (19%)

Query: 12  AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           AI+RM E +   T   L    G+  ++   +  R            E + +    T  ++
Sbjct: 10  AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L     S   +      E+                     G           +     
Sbjct: 63  NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPS 108

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +                       +         +  G  ++     G+I  + +    
Sbjct: 109 TFKKP------FVITDKNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 154

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G  I +   N  +     ++ D+E I +I+
Sbjct: 155 GGRIFVEGGNRAF---ECKIEDVEIIGKII 181


>gi|29829529|ref|NP_824163.1| signal peptidase protein [Streptomyces avermitilis MA-4680]
 gi|29606637|dbj|BAC70698.1| putative signal peptidase protein [Streptomyces avermitilis
           MA-4680]
          Length = 144

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLM 196
             +    SM+P  + GD L+L    +V  GD ++++       +V K  + RR     ++
Sbjct: 19  AAEVTGPSMVPTLQHGDRLLLQYGARVRPGDIVVLRHPFQQDLLVVKRAVERREGGWWVL 78

Query: 197 SLNC 200
             N 
Sbjct: 79  GDNP 82


>gi|225028123|ref|ZP_03717315.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353]
 gi|224954593|gb|EEG35802.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353]
          Length = 178

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 48/176 (27%), Gaps = 29/176 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I  +  +  LT   LA +A L     ++ +R         PS  ++  +L     
Sbjct: 2   ELGEKIKELRNKQGLTQEELADRAELSKGFISQLERDMT-----SPSIATLEDLLQCLGT 56

Query: 68  T----------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           T            Q++          +++ K       P +         +         
Sbjct: 57  TLGEFFNEEQEEEQIVFTEEDFFVKKDEEYKNQIKWIIPNAQKNCMEPIHLLLEKGGETC 116

Query: 118 VGVP--------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
              P              EI        A +     ++   T  L    + +++ +
Sbjct: 117 PDNPHEGEEFGYILKGKVEIHLGKRICIAQKGDAFYYRADKTHYLKGIERTELIWV 172


>gi|29348605|ref|NP_812108.1| hypothetical protein BT_3196 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569054|ref|ZP_04846464.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29340510|gb|AAO78302.1| putative transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841073|gb|EES69154.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 236

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 57/208 (27%), Gaps = 19/208 (9%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA   G+   + +         RNR      + K+       +      P    +  +
Sbjct: 24  SELASYLGVSRATLSNWC-----ARNRIDFHLLLNKMRDVDLNWLLVGKGTPRHQTKLCK 78

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-------AIQTQD 137
                  +       +    D       +      +  + +             +I   D
Sbjct: 79  SDLASGEVQMIHNPKTVEALDDRSVALYDITAAANLKTLLTNKRQYMVGKIQIPSIPLCD 138

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGD---IVAKVLIS-RRG 190
                   SM P+ + GDI+        +    G+  L+         +  K +    + 
Sbjct: 139 GAVYISGDSMYPILKSGDIVGFKEINSFSNLIYGEMYLVSFTIEGDEYLAVKYVNRSEKE 198

Query: 191 RSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             + L+S N  +    +  S I  +A +
Sbjct: 199 GCLKLVSYNAHHDPMDIPFSTINAMAIV 226


>gi|304440189|ref|ZP_07400079.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371238|gb|EFM24854.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 182

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 6/134 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +    NLT   LA+++ L     ++ +R         PS  ++  IL A   
Sbjct: 6   DIGNKLKLIRISQNLTQDELAKRSELTKGFISQVERNLT-----SPSVTTLIDILEALGT 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  +      +    +E    E        S S    ++  F       T+  P+ +S  
Sbjct: 61  SPIEFFKDDEAKFFFSEDDYFENTNEELGHSISWIVPNAQRFMMEPIIITI-NPDGKSEE 119

Query: 128 NGIYAIQTQDTRHK 141
              +  +T     K
Sbjct: 120 IPPFEGETFGYVLK 133


>gi|108803433|ref|YP_643370.1| XRE family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108764676|gb|ABG03558.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 134

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + ++  +   +   LAR++G+D  + +  +        R PS  ++ K+  A    + +L
Sbjct: 5  LRQLRRQMGWSQHELARRSGVDRATISAIESG-----KRDPSGSTMRKLADALGVPVAEL 59

Query: 73 LDLP 76
             P
Sbjct: 60 YKEP 63


>gi|293400092|ref|ZP_06644238.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306492|gb|EFE47735.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 247

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 2/108 (1%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +++K+   I  + +   LT   LA K  +   + +K +R         P    +  
Sbjct: 1   MDQINNEKVGSYISELRKAKKLTQKDLADKLYVSDKTVSKWERGVSM--PSIPLLMPLAN 58

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           +   T   + +                    ++Y         +    
Sbjct: 59  LFDITVTELLKGEHQNIESLTKPCDIHAYDHVIYHTLQQHRKHWIIAY 106


>gi|269838246|ref|YP_003320474.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269787509|gb|ACZ39652.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 71

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  + E    T   LA + G+ P +    +    E     P    + K+      ++
Sbjct: 1  MKTIKELREARGWTQLELAYRVGVTPATIYNWEAGRNE-----PKASQLRKLAQIFGVSM 55

Query: 70 CQLLDLPF 77
           ++   P 
Sbjct: 56 DEIDFTPS 63


>gi|187250978|ref|YP_001875460.1| helix-turn-helix domain-containing protein [Elusimicrobium minutum
           Pei191]
 gi|186971138|gb|ACC98123.1| helix-turn-helix domain protein [Elusimicrobium minutum Pei191]
          Length = 238

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 71/247 (28%), Gaps = 45/247 (18%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIF 59
           M     +KI   I R+     +T   LA + G+   ++ ++  +            E++ 
Sbjct: 1   MKM--GEKIAANIKRL----KITKVKLAERIGISDSSAISQWVKGKTRPLP-----ENLE 49

Query: 60  KILAATNETICQLLDLPFSDGRTTE---------------------KKEKEIPLLYFPPS 98
           K+ +    T+ +L D   +     E                      +++E         
Sbjct: 50  KLASEFGITVQELDDDIETGENLEEKTRALLYAIESITKKMSFGVSDEQEEYSTSSLSNK 109

Query: 99  GSGGFFDSGVFPT-GNKWNTVGVPEIRSPHNGIYAI------QTQDTRHKTQDTSMLPLY 151
                F        G       +    S  +    +             K +   +    
Sbjct: 110 TKIDVFMPKHIAVTGEAKEEFFIYPSYSSVDEYLPMLIDSPDDKTPFALKIESGEVYAYA 169

Query: 152 RKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           ++G+  ++  A +   G   L+K      + K++     + I L S           + D
Sbjct: 170 KEGEYAVIMPADKAITGKTALVKFNKKYCIKKIIF--NDKEIVLKS---GKKEIKANLED 224

Query: 212 IEWIARI 218
           +E +  +
Sbjct: 225 VEVLGFV 231


>gi|81299574|ref|YP_399782.1| XRE family transcriptional regulator [Synechococcus elongatus PCC
          7942]
 gi|81168455|gb|ABB56795.1| transcriptional regulator, XRE family [Synechococcus elongatus
          PCC 7942]
          Length = 109

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + +R  L+ + LA   G+DP +    +R              + K+  A + +   
Sbjct: 31 NIAALRKRTGLSQTQLANIVGVDPVTIRNWERGRSGLDW----FVKLAKLCEALDCSPRD 86

Query: 72 LLDLPF 77
          L+  P 
Sbjct: 87 LVKDPD 92


>gi|26987275|ref|NP_742700.1| transcriptional regulator, putative [Pseudomonas putida KT2440]
 gi|24981919|gb|AAN66164.1|AE016244_5 transcriptional regulator, putative [Pseudomonas putida KT2440]
          Length = 278

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 60/231 (25%), Gaps = 28/231 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR-----------NRWPSTES 57
            + +  +     LTPS  A +  +     N   KR     R            RW  T  
Sbjct: 50  GDRLRALLHECGLTPSDFAAQRSVTAQHVNNWFKRGVPLARLDELADLFCVHRRWLRTGE 109

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K                      +E + + + + Y+               +      
Sbjct: 110 GPKHPNPLLRNGRPRPAPANPLTPLSEHRGRVLKVPYYEVRNG--------LLSPVGSKH 161

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       G+ A            ++MLPL      L ++  +            + 
Sbjct: 162 LRLPAKALKGLGVQA--GNAICLAMPASNMLPLIPLQATLAIDLGMTQVVEGETYALLQN 219

Query: 178 GDIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222
           G +    L      ++ L S     Y V+    +      +E +  +   S
Sbjct: 220 GMLRVNNLSLGPHDTLYLHSHDRRNYTVERYTAAQRQAQGLEILGWVFHWS 270


>gi|328886799|emb|CCA60038.1| Transcriptional regulator, MerR family [Streptomyces venezuelae
           ATCC 10712]
          Length = 189

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 9/165 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I    ++  ++ + LA ++GL     ++ +R         PS  SI++I  A + 
Sbjct: 12  EVGRVIRSCRKQRGVSMAVLAARSGLSQPFLSQLERGLAT-----PSLSSIYRIAEALDV 66

Query: 68  TICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           T    L  P   G  +     + I +       +      G       +     P     
Sbjct: 67  TPGTFLRPPGRPGAVSHESDPQTIRVNETAGQVAQVLIPGGRSTVMEAYEHHFDPGQ--G 124

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
             G +    +D  +  +   +L      + L L +    +    +
Sbjct: 125 ERGWFEHPGEDFLYVLEGEIVL-EVEGEEPLTLRAGQSAHHRGEV 168


>gi|283785296|ref|YP_003365161.1| DNA-binding protein [Citrobacter rodentium ICC168]
 gi|282948750|emb|CBG88345.1| putative DNA-binding protein [Citrobacter rodentium ICC168]
          Length = 191

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 14/148 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E    + + LA KAG+     +K +R         P+   + ++  A 
Sbjct: 9   NQRIGVRIRIERESRGWSLTELAEKAGVSRAMIHKIERGES-----SPTATLLGRLSGAF 63

Query: 66  NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             ++  L+               +   +  +   L       S    D          + 
Sbjct: 64  GISMSTLIARAEMPEGKLLRAADQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPGGSD- 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
           + +P              Q      +  
Sbjct: 123 IPMPASSYARARQLIWLQQGELVFVEGE 150


>gi|258650681|ref|YP_003199837.1| XRE family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258553906|gb|ACV76848.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM
           44233]
          Length = 197

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 5/134 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++   + R+  +  +T + LA   G+  ++ ++ +        R  S E +  +  A N
Sbjct: 13  EQVGPRLKRLRTQRQVTLTALAAATGISKSTLSRLETGQ-----RKASLELLLPLAMAYN 67

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +  L+  P         K + +      P                   +   P     
Sbjct: 68  VPLDDLVGGPDIGDPRVRLKPRRVKGRTVIPLTQQPGSTQAWKIVIPTTKSTPEPRSHEG 127

Query: 127 HNGIYAIQTQDTRH 140
           H  +Y +  +    
Sbjct: 128 HEWLYVLSGRMRLV 141


>gi|296139176|ref|YP_003646419.1| XRE family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027310|gb|ADG78080.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
           DSM 20162]
          Length = 171

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  +     L+ S LAR+AG+   S ++ +  G     R P+ E+++ +    + 
Sbjct: 5   DVGGRLRELRSERGLSLSELARRAGVGKGSLSEIEAGG-----RNPTVETLYSLCGPLDV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            +  LL        T     + + L                FP  +
Sbjct: 60  PLTALLGESPGTDSTAHGGMRTVLLSVRHLPHVTVEVFRLEFPESS 105


>gi|119716897|ref|YP_923862.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides
          sp. JS614]
 gi|119537558|gb|ABL82175.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides
          sp. JS614]
          Length = 508

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+     +I   I    +   LT   LA   G   ++ N+ ++          S E + +
Sbjct: 1  MSEGYKNRIGNLIRDARKHRGLTQHQLADLLGTSQSAINRIEKGHQN-----LSLEMLAR 55

Query: 61 ILAAT 65
          I AA 
Sbjct: 56 IGAAL 60


>gi|27381246|ref|NP_772775.1| hypothetical protein blr6135 [Bradyrhizobium japonicum USDA 110]
 gi|27354413|dbj|BAC51400.1| blr6135 [Bradyrhizobium japonicum USDA 110]
          Length = 202

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 65/211 (30%), Gaps = 44/211 (20%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I+R  E+   +  GLA   G+ P + ++       G  R      I  I+      +  +
Sbjct: 7   IERGLEKTGKSKGGLAAAMGVRPGAVSEIL-----GGERLVKASEIIPIMEYLELNLAPI 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           +                                         +  V  PE        + 
Sbjct: 62  MGRVG-----------------------------AGAVIEPDYEQVP-PEGLGDIALPFP 91

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV----NCGDRLLIKPRTGDIVAKVLIS- 187
           I  +    +    SMLP Y  GD++++    +       G+  +++ +TG+   K +   
Sbjct: 92  IMEETIAFEIVGDSMLPKYESGDVIVVYKDQRHPLSSFYGEEAVVRLKTGERYLKTIERG 151

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +    ++L S N            ++W+  I
Sbjct: 152 KSPSVVNLNSFNAK--PIV--GVKLDWVGEI 178


>gi|325661815|ref|ZP_08150437.1| hypothetical protein HMPREF0490_01173 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471904|gb|EGC75120.1| hypothetical protein HMPREF0490_01173 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 205

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
           R+    +   +      K +  SM+      GD LI+    +   GD ++      +   
Sbjct: 100 RTSLPTVIFGKGPFYILKAKGDSMVDAGIESGDTLIIRKNAEPKLGDIVVALDENNENTL 159

Query: 183 KVL--ISRRGRSIDLMSLNCC-YPVDTV 207
           K    I +    + L  +N   YP   +
Sbjct: 160 KRYAGIDKESNKVVLEYMNQEVYPDKKI 187


>gi|257870456|ref|ZP_05650109.1| predicted protein [Enterococcus gallinarum EG2]
 gi|257804620|gb|EEV33442.1| predicted protein [Enterococcus gallinarum EG2]
          Length = 207

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E I ++ +   +T   +A +  + P + +K +R        +P  + + K+    + 
Sbjct: 3  EIGENIKKLRKAKRMTQKEVANQLNVTPQTISKWERNIS-----YPDLDMLVKLSQLFHI 57

Query: 68 T 68
          +
Sbjct: 58 S 58


>gi|225375055|ref|ZP_03752276.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM
           16841]
 gi|225213127|gb|EEG95481.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM
           16841]
          Length = 305

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 50/154 (32%), Gaps = 3/154 (1%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK--RFGIEGRNRWPSTESIFKILAA 64
           +KI + I +      +T   LA K  +   + ++ +  R   +     P  E +   +  
Sbjct: 4   EKIGKYIRKKRIEKGMTQQQLAEKIQVTEKAVSRWETGRGVPDISLLEPLAEELHVSVTE 63

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                 ++ +    D +          ++ +        +++G F  G     V +    
Sbjct: 64  LLNGEERVQEEAVHDTKAHMADIDITNVIEYVQENRKEKYNTG-FKIGIGCLVVSLVLFL 122

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
                 Y  Q        + T +  ++  G++++
Sbjct: 123 LYLREAYRFQGNYFGTMIRMTVISGIFLLGEMVL 156


>gi|194471472|ref|ZP_03077456.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|205358313|ref|ZP_02655078.2| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|194457836|gb|EDX46675.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|205335557|gb|EDZ22321.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
          Length = 185

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 8  MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I    N      +  P ++   T   +++  ++
Sbjct: 62 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 94


>gi|197251173|ref|YP_002146431.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|238911841|ref|ZP_04655678.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Tennessee str.
          CDC07-0191]
 gi|197214876|gb|ACH52273.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
          Length = 178

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1  MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I    N      +  P ++   T   +++  ++
Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 87


>gi|34497476|ref|NP_901691.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34103331|gb|AAQ59693.1| probable transcriptional regulator [Chromobacterium violaceum
          ATCC 12472]
          Length = 181

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  +  R  L+   LA++AG+   + +  ++  +      PS  S+ K+L     
Sbjct: 2  DVGARLRMVRTRFGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVSSLKKVLEGLPI 56

Query: 68 TICQLLDLPFSDGRT 82
          T+ +         + 
Sbjct: 57 TLAEFFTFDAEPAQP 71


>gi|89069114|ref|ZP_01156487.1| DNA binding protein, putative [Oceanicola granulosus HTCC2516]
 gi|89045287|gb|EAR51353.1| DNA binding protein, putative [Oceanicola granulosus HTCC2516]
          Length = 285

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 4/102 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +     R  L  S LAR+AG+D ++ ++  +       R P+             +   
Sbjct: 17  RLAAAMARRGLNQSDLARQAGVDRSTVSQLLKDDT----RLPNAHVAALCAEVLGVSADW 72

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           LL L        +     + +   P +               
Sbjct: 73  LLGLTQRPELAADLVAAAMKITEAPRALVDEQIFDWHREAEG 114


>gi|291447690|ref|ZP_06587080.1| signal peptidase protein [Streptomyces roseosporus NRRL 15998]
 gi|291350637|gb|EFE77541.1| signal peptidase protein [Streptomyces roseosporus NRRL 15998]
          Length = 145

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179
           PE R    G    +      +    SM+P    GD+L++   + V  GD ++++      
Sbjct: 5   PERRQVSGGGRVTRRPLRVVEVTGPSMVPTLYHGDLLLVQYGVPVRPGDVVILRHPFQQD 64

Query: 180 -IVAKVLISRRGRSIDLMSLNC----CYPVDTVEMSDIEWIARI 218
            +V K  + RR     +   N           V   ++  +AR+
Sbjct: 65  LLVVKRAVERRPGGWWVRGDNTFAGGDSTDYGVVPEEL-VLARV 107


>gi|254669535|emb|CBA03488.1| probable transcription regulator [Neisseria meningitidis alpha153]
 gi|316985890|gb|EFV64831.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325128155|gb|EGC51047.1| hypothetical protein NMXN1568_1090 [Neisseria meningitidis N1568]
 gi|325130148|gb|EGC52927.1| hypothetical protein NMBOX9930304_1071 [Neisseria meningitidis
           OX99.30304]
 gi|325134224|gb|EGC56873.1| hypothetical protein NMBM13399_1167 [Neisseria meningitidis M13399]
 gi|325140271|gb|EGC62796.1| hypothetical protein NMBCU385_1110 [Neisseria meningitidis CU385]
 gi|325144414|gb|EGC66716.1| hypothetical protein NMBM01240013_1198 [Neisseria meningitidis
           M01-240013]
 gi|325200306|gb|ADY95761.1| conserved domain protein [Neisseria meningitidis H44/76]
 gi|325202205|gb|ADY97659.1| conserved domain protein [Neisseria meningitidis M01-240149]
          Length = 51

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARILWAS 222
           +  K +  +   S+ L+S N  YP   + ++   DI+ I +++  S
Sbjct: 2   LWVKRIQRQIDGSLLLISDNSTYPPMPLALAEHPDIQIIGQVVQVS 47


>gi|198283913|ref|YP_002220234.1| XRE family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666348|ref|YP_002426547.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248434|gb|ACH84027.1| transcriptional regulator, XRE family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518561|gb|ACK79147.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 181

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 13/166 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++ + I ++ E    +  GLA +A + P++ ++ +          PS  ++ KI AA  
Sbjct: 2   EQVCKKIRQLREDRGWSVRGLAARAEISPSALSQIEAGQN-----SPSIATLEKICAALQ 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIR 124
             I  + D   + G     +  +    Y   S +     +   P         V  P   
Sbjct: 57  IPIAAIFDDGETAGLPWIMRSGDRRKFYSAGSHASLEPLARGLPQKKMQPLLMVLEPGGE 116

Query: 125 SPHNGIYAIQTQDTRHKTQDTS------MLPLYRKGDILILNSAIQ 164
              +   + + ++     + T+      +     +GD +  +  + 
Sbjct: 117 CGEHPYTSAEGEEFTIVIRGTAAFEQSGVTTELGEGDAIYYDPRLP 162


>gi|167747594|ref|ZP_02419721.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662]
 gi|239623032|ref|ZP_04666063.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167652956|gb|EDR97085.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662]
 gi|239522611|gb|EEQ62477.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 123

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I E I R  E   LT   LA  AG+  +  +K +       +R    ++  KIL A  
Sbjct: 8  ITENIRRAREERGLTQEALAELAGISHSHLSKVESG-----SRTIGMKTYIKILEALE 60


>gi|160947244|ref|ZP_02094411.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270]
 gi|158446378|gb|EDP23373.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270]
          Length = 180

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 6/135 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I  +     LT   LA +A L     ++ +R         PS  S+  +L A   
Sbjct: 2   DIGEKIKNLRTILGLTQEELAERAELTKGFISQLERGLT-----SPSISSLEDVLEALGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG-SGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            I         +    +K +    +     S       ++          T+   +  S 
Sbjct: 57  NISDFFKEEKEEKFVFQKFDAYETIFENGNSKLEWIVPNAQKNSMEPIIITLNEQKSFSR 116

Query: 127 HNGIYAIQTQDTRHK 141
               +  +      K
Sbjct: 117 TYEPFEGEEFGYVLK 131


>gi|330985511|gb|EGH83614.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 225

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 8/164 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++   E +  +     LT   L   AG+  +  +K +          P  + + K+  A 
Sbjct: 2   NETFAERLAHLRAEKGLTQRELGAAAGVAWSMISKYESGKS-----APRLKVLMKLADAL 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  +L           +  +     L    + +          TG   + +   E+  
Sbjct: 57  GVSADELKGALSKQTNKLKIYDGFSSRLIAARANAAFSRKKLCEATGLSGDDLADMELGD 116

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                  ++       T   S+     + + ++L+    V  GD
Sbjct: 117 LLPSPEDVKKIAHALGTSVDSLAGAKHEEEAVLLH---FVEPGD 157


>gi|161613938|ref|YP_001587903.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|161363302|gb|ABX67070.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
          Length = 178

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1  MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I    N      +  P ++   T   +++  ++
Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 87


>gi|220923328|ref|YP_002498630.1| XRE family transcriptional regulator [Methylobacterium nodulans
          ORS 2060]
 gi|219947935|gb|ACL58327.1| transcriptional regulator, XRE family [Methylobacterium nodulans
          ORS 2060]
          Length = 183

 Score = 49.8 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           ++  +   +  +  RH L+   LA+KAG+  ++ +  +          PS  ++ +IL 
Sbjct: 1  MTNDGVGARLRYVRLRHGLSQRALAKKAGVVNSTISLIESGKAN-----PSVGALKRILD 55

Query: 64 ATNETICQLL 73
          A    + +  
Sbjct: 56 AVPIGLAEFF 65


>gi|222150840|ref|YP_002559993.1| type-I signal peptidase SipB homolog [Macrococcus caseolyticus
           JCSC5402]
 gi|222119962|dbj|BAH17297.1| type-I signal peptidase SipB homolog [Macrococcus caseolyticus
           JCSC5402]
          Length = 182

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
               SM P +  GD +I+N    ++ GD ++    +     K +I + G  ++  
Sbjct: 32  VSGDSMYPTFTDGDKVIVNKMSTLHHGDVIVFHTGSTQDYVKRIIGKPGDKVEYR 86


>gi|149201921|ref|ZP_01878895.1| possible transcriptional regulator, XRE family protein [Roseovarius
           sp. TM1035]
 gi|149144969|gb|EDM32998.1| possible transcriptional regulator, XRE family protein [Roseovarius
           sp. TM1035]
          Length = 129

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +        L    LA KAGL P+S +  ++       R PS +++  +  + + T 
Sbjct: 24  GRRLRAARTERGLEQQQLAEKAGLPPSSISHFEKGA-----RKPSFDNLRNLAKSLDVTT 78

Query: 70  CQLLDLPFSDGRTTEKKEKEIPL 92
             LL    +  R    +     L
Sbjct: 79  DYLLGRVDTMDRVESAQRLHRHL 101


>gi|78187738|ref|YP_375781.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273]
 gi|78167640|gb|ABB24738.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273]
          Length = 120

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I     R   +   LA KAGL  T     +R       R  +  +  KI  A N  
Sbjct: 11  LGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGE-----RNITLLNYAKIADALNLA 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +  L+          ++  K+  ++          F      +G  
Sbjct: 66  MHDLMKDLVYPPPPPKQTSKKNRVVGLLAGRCRFLFIEARPGSGLG 111


>gi|325697167|gb|EGD39054.1| transcriptional regulator [Streptococcus sanguinis SK160]
          Length = 108

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS    FKI    NE
Sbjct: 41 QLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIAFKIAHIFNE 95

Query: 68 T 68
           
Sbjct: 96 N 96


>gi|298246750|ref|ZP_06970555.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
 gi|297549409|gb|EFH83275.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
          Length = 930

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 9/144 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +     + +     R   +   LA + G+   + N+ +R         PS     K
Sbjct: 1   MKKLAPAGANQRLRAERLRKRWSQQELADRIGVSVITINRWERGVT-----APSPYFRLK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + +   ++  +L   P          E   P+ +        +      P       +  
Sbjct: 56  LCSLFGKSATELGLFPDQQAEQAMSPEPGPPVDHPQLPQQLKYLPYRRNPFFTGREAL-- 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
             +   H  + A  TQ        
Sbjct: 114 --LERLHTRLQASPTQIYALCGLG 135


>gi|260425895|ref|ZP_05779874.1| putative transcriptional regulator [Citreicella sp. SE45]
 gi|260420387|gb|EEX13638.1| putative transcriptional regulator [Citreicella sp. SE45]
          Length = 89

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 147 MLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC---Y 202
           M P    GD+++++    V   G     + +        L     R +   S N     +
Sbjct: 1   MAPAICDGDLVMVDRKATVLRNGKAYAYQTQEDGFCLARLELVPERILIARSDNPDTEQF 60

Query: 203 PVDTVEMSDIE-----WIARILWA 221
                  ++I       +  ++W+
Sbjct: 61  SPKYYSGNEIALVQAGILGEVIWS 84


>gi|254409465|ref|ZP_05023246.1| hypothetical protein MC7420_7098 [Microcoleus chthonoplastes PCC
          7420]
 gi|196183462|gb|EDX78445.1| hypothetical protein MC7420_7098 [Microcoleus chthonoplastes PCC
          7420]
          Length = 74

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 26/53 (49%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + ++ +R  LT   LA   G+   + +  ++  +E +  +  T+ + ++L  T
Sbjct: 10 LTKLRQRAGLTQQELASAIGVTQKTISIWEKGSVEPKLTFEQTKLLIEVLNCT 62


>gi|206976223|ref|ZP_03237132.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97]
 gi|206745677|gb|EDZ57075.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97]
          Length = 119

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + ++  LT   LA +  L        +R       R  S  ++ KI      +
Sbjct: 8  VGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGE-----RNISMLTLQKIADGLEVS 62

Query: 69 I 69
           
Sbjct: 63 P 63


>gi|170729039|ref|YP_001763065.1| XRE family transcriptional regulator [Shewanella woodyi ATCC
          51908]
 gi|169814386|gb|ACA88970.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC
          51908]
          Length = 327

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I R+ ++   +   LA K  +   S +K +          P    I K+      +
Sbjct: 3  LAEKIIRLRKQLGWSQEELAEKMAISRQSVSKWESANSI-----PDLNKIIKLADIFEVS 57


>gi|257062841|ref|YP_003142513.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
 gi|256790494|gb|ACV21164.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
          Length = 369

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I R+ +   LT  GLA   G+   S +K +         +P  E + KI A  + T
Sbjct: 7   IGTTIYRLRKEARLTQDGLAMHLGVTKASVSKWENGQS-----YPDIELLPKIAAYFDIT 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I QL+       R    +E       F                G+ ++   +
Sbjct: 62  IDQLIGYEPQMSRVGIARECARLRAAFANEPFDQAHRQCQQLVGDYYSCYPL 113


>gi|224543174|ref|ZP_03683713.1| hypothetical protein CATMIT_02374 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523961|gb|EEF93066.1| hypothetical protein CATMIT_02374 [Catenibacterium mitsuokai DSM
           15897]
          Length = 159

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 50/170 (29%), Gaps = 28/170 (16%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + +  E+  ++   +A++ G++ ++  +  +   +      + E I K+       + 
Sbjct: 5   DYLKKYKEKMGVSNEYIAKQLGVNRSTVTRWLKGDTKVT----NPEVIEKLSFILGADVE 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L++      +    + K    L    +                +  V   +        
Sbjct: 61  SLINNEERFEKPVLGEVKAGYDLLIDENF-------------EGYEQVTQDDYYRG---- 103

Query: 131 YAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                 D   +    SM       GD+L +     V  G   ++     +
Sbjct: 104 ------DFFLRVVGDSMSGAHIHDGDLLYVKKCQDVPSGTIAVVLIGRSE 147


>gi|83589168|ref|YP_429177.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572082|gb|ABC18634.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 146

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 7  KKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          K+    I  + E+    + + LAR +G+  ++  + +     G+ R P  E++ K+    
Sbjct: 4  KEFGSYIAHLREKAGFESQAALARASGVWNSTIARIE----AGQTRQPDPETLKKLAPFL 59

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
            +   L+          +  +      ++
Sbjct: 60 KVSAQDLMTAAGYLPEEEKPTKPIDTREWY 89


>gi|282851951|ref|ZP_06261311.1| DNA-binding protein [Lactobacillus gasseri 224-1]
 gi|282556960|gb|EFB62562.1| DNA-binding protein [Lactobacillus gasseri 224-1]
          Length = 153

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I ++ E   ++ S +A   G+   + +  ++       R P  E   K+      ++
Sbjct: 1  MNRIKQLREEKGVSQSDVANAVGITRQAVSLYEQG-----KRAPKLEIWQKLADLFEVSV 55

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
            L  L     +    +  +  +     
Sbjct: 56 PYLQGLSEMSEQVYLIQSTDCLVDRAIQ 83


>gi|227544982|ref|ZP_03975031.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|227185043|gb|EEI65114.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
          Length = 247

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    +KK    I  + +   LT   +A   G+   + ++ +        R P  E+  K
Sbjct: 12 MYMSENKKPHNRIAELRKEKGLTLQQVADAIGVGNNTISRYETG-----KREPKLETWQK 66

Query: 61 ILAATNETICQLLDL 75
          +    + T+  L   
Sbjct: 67 LANYFDVTVYYLQGY 81


>gi|290474343|ref|YP_003467222.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004]
 gi|289173655|emb|CBJ80435.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004]
          Length = 121

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + + KK  + +  +  +  L+ S L + A L  T   + +R     R    + + +  
Sbjct: 1  MAAATEKKFAQRLRELRRQKGLSQSELGKLAELHYTHIGRFERGTS--RPGSDTLKRLAD 58

Query: 61 ILAAT 65
          +L  T
Sbjct: 59 VLDVT 63


>gi|291456508|ref|ZP_06595898.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213]
 gi|291381785|gb|EFE89303.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213]
          Length = 161

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 37/147 (25%), Gaps = 7/147 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT--N 66
           I + I  + E   LT S  A K  +   + ++ ++   E     PS + I  I       
Sbjct: 3   IGQVIKVVREERGLTQSQFAHKLFVTQQALSRWEKGTAE-----PSIDMIRLISTRFEVP 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                 +              +       P     G + +  +  G         +    
Sbjct: 58  MARLMEMPDNGFCQSCAMPFYRPEDHGTEPDGTRSGDYCNYCYDDGVFLQDYANSDELVA 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                  ++     +  +  M  L   
Sbjct: 118 ACAPMMAESCHISVEQAEDCMSALLPN 144


>gi|169824019|ref|YP_001691630.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|167830824|dbj|BAG07740.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
          Length = 176

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +     E I  + +++ L+   LA +  +   + +K +R         P ++S+ K
Sbjct: 1  MKMLN-----ENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSV-----PDSDSLIK 50

Query: 61 ILAATNET 68
          +      +
Sbjct: 51 LSEILQTS 58


>gi|15891606|ref|NP_357278.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens
          str. C58]
 gi|15160044|gb|AAK90063.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens
          str. C58]
          Length = 182

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  +  RHN++   LAR+AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DLGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         R   
Sbjct: 59 GLAEFFAFEPETSRKAF 75


>gi|85060022|ref|YP_455724.1| hypothetical protein SG2044 [Sodalis glossinidius str. 'morsitans']
 gi|84780542|dbj|BAE75319.1| hypothetical protein [Sodalis glossinidius str. 'morsitans']
          Length = 217

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 18/180 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           KKI + +  + ++  +    L+   G+   + N  +R         P+  ++  I     
Sbjct: 17  KKIGKNLVYLMKKQEIDAQHLSTLTGIGIATINNLRRGVGN-----PTISTLSAISDFFG 71

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +  L D    D + T    K++PL+ +      G +          + TV V +    
Sbjct: 72  VKMGNLTDTVMEDCKNTLGNIKKMPLIKY---NDLGSYYHSKIDITKSY-TVEVEDNADN 127

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                         +  + ++ P +  G I +++     N GD +L+K +   +  + + 
Sbjct: 128 ---------SLIAIEIANNALSPFFESGTICVVSEQECFNDGDVVLVKIKDYPLCFRRVF 178


>gi|330508360|ref|YP_004384788.1| Helix-turn-helix protein [Methanosaeta concilii GP-6]
 gi|328929168|gb|AEB68970.1| Helix-turn-helix protein [Methanosaeta concilii GP-6]
          Length = 70

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +H      I  +  RH LT   LAR  G+   +    ++         PS +   K
Sbjct: 1  MVLRTH------IKELRARHGLTQEELARMVGVRRETILFLEKGKYN-----PSLKLACK 49

Query: 61 ILAATNETICQLLDLPF 77
          I  A   +I ++     
Sbjct: 50 IALALQASIDEIFIFEE 66


>gi|323694108|ref|ZP_08108287.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
 gi|323501825|gb|EGB17708.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
          Length = 177

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 16/139 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +     LT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2   NIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56

Query: 68  TICQLLDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           TI +  +                  + + K       P +         +  +   +   
Sbjct: 57  TIGEFFNETPEEQIVFGKNDYFTKEDTELKNEIKWIIPNAQKNIMEPIHLVLSPGGFTYP 116

Query: 119 GVPEIRSPHNGIYAIQTQD 137
             P         Y +Q   
Sbjct: 117 DTP--HEGEEFGYVLQGSI 133


>gi|254973959|ref|ZP_05270431.1| DNA-binding protein [Clostridium difficile QCD-66c26]
 gi|255091345|ref|ZP_05320823.1| DNA-binding protein [Clostridium difficile CIP 107932]
 gi|255313003|ref|ZP_05354586.1| DNA-binding protein [Clostridium difficile QCD-76w55]
 gi|255515762|ref|ZP_05383438.1| DNA-binding protein [Clostridium difficile QCD-97b34]
 gi|255648855|ref|ZP_05395757.1| DNA-binding protein [Clostridium difficile QCD-37x79]
 gi|260682072|ref|YP_003213357.1| DNA-binding protein [Clostridium difficile CD196]
 gi|260685670|ref|YP_003216803.1| DNA-binding protein [Clostridium difficile R20291]
 gi|306518972|ref|ZP_07405319.1| DNA-binding protein [Clostridium difficile QCD-32g58]
 gi|260208235|emb|CBA60614.1| DNA-binding protein [Clostridium difficile CD196]
 gi|260211686|emb|CBE01972.1| DNA-binding protein [Clostridium difficile R20291]
          Length = 364

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 14/198 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +    +   +T   LA   G+   S +K +         +P    + ++    N 
Sbjct: 5   NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQS-----YPDITFLPQLATYFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T+ +L+       +    K        F         D         ++   +       
Sbjct: 60  TVDELICYEPQMMKEDINKLYNKLCKDFTVKPFDEVMDEIREIIKKYYSCFPLIFRM--- 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
            G+  +   D      +     L  +   + +      N  D    + ++ +    +L++
Sbjct: 117 -GLLIVNHYDI---VDEKKRELLISEALEIFIRIQETCNDIDIC-RQAKSMEATCYILLN 171

Query: 188 RRGRSIDLMSLNCCYPVD 205
           +  + IDL+  N  +P+ 
Sbjct: 172 QPIQVIDLLQ-NSNFPMI 188


>gi|320105343|ref|YP_004180933.1| hypothetical protein AciPR4_0098 [Terriglobus saanensis SP1PR4]
 gi|319923864|gb|ADV80939.1| hypothetical protein AciPR4_0098 [Terriglobus saanensis SP1PR4]
          Length = 237

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 71/230 (30%), Gaps = 23/230 (10%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ +   ++R      LT S LAR AG      +         + R  S E + ++L + 
Sbjct: 7   HELLRAELERRISAGRLTGSVLARMAGFQQAHISNFLN-----KKRALSLEGLDRVLESQ 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             T+ + +         T+  ++  PL   P   +                TV V   R 
Sbjct: 62  GLTV-EQILPIDLAASATQPPDQADPLESVPVVSAAAAMGEPRIAPAATQETVYVSAARL 120

Query: 126 PHNGIYAIQTQD-----TRHKTQDTS---MLPLYRKGDILILNSA----IQVNCGDRLLI 173
             N       +         +        M P+   G ++IL+         +     + 
Sbjct: 121 HGNRPRIAPHRGQWQRFVALRIDAQQAAPMEPVLPSGAVVILDRHYNSVAPYSAHQPSVF 180

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE-----WIARI 218
             R G  ++   ++     + L      +PV  V +   E      + R+
Sbjct: 181 AVRHGSGLSLRYVTLEESRLVLRPYAREFPVQLVRLLQTEAPGDFIVGRV 230


>gi|237746118|ref|ZP_04576598.1| predicted protein [Oxalobacter formigenes HOxBLS]
 gi|229377469|gb|EEO27560.1| predicted protein [Oxalobacter formigenes HOxBLS]
          Length = 130

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 5/99 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            KI + I+      N++ S LARK G+ P +  K ++         P   ++ K+  A  
Sbjct: 2   DKIAKRIEDCRHGLNISQSELARKIGVTPQAVQKWEKAKTV-----PRGATLRKLADALG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
            +   +              E+E              + 
Sbjct: 57  VSPAYIQFGISDPVPDYPAVEQEKAEYIVNKRPGQNDWP 95


>gi|225375203|ref|ZP_03752424.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM
           16841]
 gi|225212954|gb|EEG95308.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM
           16841]
          Length = 187

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 5/103 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             ++K+   I  + +   LT + LA+K  +   + +K +R        +P  + +  +  
Sbjct: 1   MDNQKLGIFITELRKEKGLTQAQLAQKLNVTDKAVSKWERGVG-----FPDIKLLEPLAD 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
             + ++ +L+        T    +            S      
Sbjct: 56  VLDISLLELMKSERLPKTTVSAPDTTDAFQNVIDLASYERKIE 98


>gi|82703709|ref|YP_413275.1| putative prophage repressor [Nitrosospira multiformis ATCC 25196]
 gi|82411774|gb|ABB75883.1| putative prophage repressor [Nitrosospira multiformis ATCC 25196]
          Length = 210

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           PE+    + +    +Q      +  SM+     +GDI+I+  +   + G+ +++     +
Sbjct: 90  PELLRIDDYLIEKPSQTILFPVKGDSMIDLGILEGDIVIIERSSSASPGE-VVLAIVDSE 148

Query: 180 IVAKVLISRRGRSIDLMSLNCC----YPVDTVEMSDIEWIARIL 219
              KVL   +     L + N      YP        +E     +
Sbjct: 149 FTLKVLARDKEG-YYLEARNEARGKEYPPIR-PQQKLEIYGFYV 190


>gi|296395417|ref|YP_003660301.1| XRE family transcriptional regulator [Segniliparus rotundus DSM
          44985]
 gi|296182564|gb|ADG99470.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM
          44985]
          Length = 148

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           +A+ R  E+  +T + LAR  GL  ++  K +          P+ E++ K  AA    +
Sbjct: 11 LDALVRAREKRRMTRADLARLTGLSTSTIQKWESGAT-----SPNIETLAKAAAALGVPM 65


>gi|118467518|ref|YP_885321.1| XRE family transcriptional regulator protein [Mycobacterium
          smegmatis str. MC2 155]
 gi|118168805|gb|ABK69701.1| transcriptional regulator, XRE family protein [Mycobacterium
          smegmatis str. MC2 155]
          Length = 142

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I   I    E   ++   LA KAG+     ++ +R       R PS + + +I  A  
Sbjct: 16 QDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRKPSADVLNQIAKALR 70

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL 92
           +   L         +   + ++  +
Sbjct: 71 VSAEVLYVRAGILEPSEPSEVRDAIV 96


>gi|77404719|ref|YP_345292.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77390369|gb|ABA81551.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides
           2.4.1]
          Length = 141

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + ++ ER  L+ + LAR+AG+   ++N+  R         P  + +  +         
Sbjct: 14  RRLQQLTERSGLSQAELARRAGMSRDTYNRYCRGLTR-----PPRKKVLALAELFGVETW 68

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           ++  L         + E+ +  L   P  S   +      +G+
Sbjct: 69  EIDPLEAGIAALRRESERSLEALGEQPIPSTPPYTLSPPSSGD 111


>gi|302876797|ref|YP_003845430.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307687480|ref|ZP_07629926.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302579654|gb|ADL53666.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 208

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M++ +   + + I  + E+  LT   LA K  +   +F+++       R    + E I K
Sbjct: 1  MSNLNIDILNQNIQTLMEQEGLTQQQLAEKIDMSQPNFSRAFNNKGGQR---FTLEQICK 57

Query: 61 ILAATNET 68
          I      +
Sbjct: 58 IADHFQVS 65


>gi|52081948|ref|YP_080739.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|319647811|ref|ZP_08002029.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
 gi|52005159|gb|AAU25101.1| possible transcriptional regulator [Bacillus licheniformis ATCC
           14580]
 gi|317390152|gb|EFV70961.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
          Length = 132

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +  E +  + E+ +L+ + LA  AG+   + ++ +     G    P   +I K+  A   
Sbjct: 3   RFGERLKELREQRSLSVNQLAMYAGVSAAAISRIEN----GHRGVPKPATIRKLAEALKM 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
              QL+D+         +++    +     +   G  D  +F   
Sbjct: 59  PYEQLMDIAGYMRADEIREQPRGYVTMQEIAAKHGVEDLWLFKPE 103


>gi|306812748|ref|ZP_07446941.1| repressor protein [Escherichia coli NC101]
 gi|305853511|gb|EFM53950.1| repressor protein [Escherichia coli NC101]
          Length = 189

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 55/211 (26%), Gaps = 40/211 (18%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +AI+R+ E +   T   L    G+  ++   +  R            + + +    T  +
Sbjct: 9   KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L     S   +      E+                     G           +    
Sbjct: 62  LNWLTTGHGSKQASANTNTIEVVKYLLSD--------------GALQEDGFYIFDKGFLP 107

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
             +              +        +         +  G  ++     G+I  + +   
Sbjct: 108 STFKKP------FVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRL 153

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G  I +   N  +     ++ D+E I +I+
Sbjct: 154 PGGRIFVEGGNRAF---ECKIEDVEIIGKII 181


>gi|224583902|ref|YP_002637700.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468429|gb|ACN46259.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 185

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 8   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 62  IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 121

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 122 TPHKAGVVEH 131


>gi|168241154|ref|ZP_02666086.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450448|ref|YP_002045645.1| XRE family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408752|gb|ACF68971.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339362|gb|EDZ26126.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 178

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHKAGVVEH 124


>gi|62180172|ref|YP_216589.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127805|gb|AAX65508.1| putative oxidoreductase/putative repressor [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714645|gb|EFZ06216.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 178

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHKAGVVEH 124


>gi|256848878|ref|ZP_05554312.1| predicted protein [Lactobacillus crispatus MV-1A-US]
 gi|256714417|gb|EEU29404.1| predicted protein [Lactobacillus crispatus MV-1A-US]
          Length = 68

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +     ++ S LA+  G    + +  +      R        + KI      +   +
Sbjct: 5  LKILRVEKGMSQSDLAQALGTTQVTVSAWETGRSTPRP-----PMMQKIADYFGVSKDDI 59

Query: 73 LDLPFSD 79
              F+ 
Sbjct: 60 FFSAFNY 66


>gi|253575334|ref|ZP_04852672.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845331|gb|EES73341.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 111

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I E I ++ +    + S LA KA +  +  +  +R         PS   I KI  A N
Sbjct: 3   EHIGERIQKLRQDRGYSLSELAEKADVAKSYLSNVERNIQS----NPSISFIEKIADALN 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
            +I  LL          + +  E+         S   F  
Sbjct: 59  VSINLLLYGDRPAPELLDPEWSELVQEAMTSGVSKKEFKE 98


>gi|237738616|ref|ZP_04569097.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
 gi|229424099|gb|EEO39146.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
          Length = 131

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT S LA +  + P++    ++       R PS E + ++    N 
Sbjct: 6  EIKDRIISLRNEKNLTQSQLAEELNISPSAIGMYEQG-----RRKPSYELLEELCDYFNV 60

Query: 68 TICQ 71
           +  
Sbjct: 61 DMDY 64


>gi|222053702|ref|YP_002536064.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221562991|gb|ACM18963.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 106

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + + +   I  + +   +T   LA + G+DP   +  +          PS E++ KI 
Sbjct: 2   KTTKELLGARIKELRKLRKMTQEKLAEQIGVDPKYVSFIEVGRS-----SPSLEAMEKIA 56

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
            A +  +  + D    + R    ++ +  L            
Sbjct: 57  QALDVEMKDMFDFSHHEAREVSIEQIDEMLSGVTEDQLKIIH 98


>gi|146299587|ref|YP_001194178.1| hypothetical protein Fjoh_1827 [Flavobacterium johnsoniae UW101]
 gi|146154005|gb|ABQ04859.1| hypothetical protein Fjoh_1827 [Flavobacterium johnsoniae UW101]
          Length = 230

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 58/224 (25%), Gaps = 18/224 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAAT 65
           +   + I +  +   +      R  G+   SF ++ K     G       + +  IL   
Sbjct: 3   ENTLKRIKQYLDYKGIRIRAFERVVGMSNGSFASQLKNDKTIG------VDKLENILHQY 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            +   + L     D    +   +                      T  +   +       
Sbjct: 57  PDINSEWLLKGNGDMLLYDTVNEGRAFYRKTEKTQSRNIPVYDIETTAEIADLLGETNSQ 116

Query: 126 PHNGIYAIQT---QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR------LLIKPR 176
                  +      D      D SM PL + GDI++      +           + +   
Sbjct: 117 KPISFLNVPRISQYDGALYLLDDSMYPLLKSGDIVVYKKINNLENNIIWGEMYLIYVSSD 176

Query: 177 TGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
             +      + +  R       + N  Y      +S I+ IA I
Sbjct: 177 NNEFFLIRYLRQSEREGYAQFAAYNSHYQTQEFPISSIKAIALI 220


>gi|256370857|ref|YP_003108681.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans
          DSM 10331]
 gi|256007441|gb|ACU53008.1| transcriptional regulator, XRE family [Acidimicrobium
          ferrooxidans DSM 10331]
          Length = 169

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            + E +     R  LT + L R+AG+  +  +  +        R PS   + +++AA  
Sbjct: 2  DSVGEVLREARRRAGLTQAELGRRAGVTQSVVSAYESGA-----RQPSVSMLARLVAAAG 56


>gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307688943|ref|ZP_07631389.1| helix-turn-helix domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578220|gb|ADL52232.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 226

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/197 (8%), Positives = 49/197 (24%), Gaps = 25/197 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTESIFKIL-AATN 66
           + + +  + +   LT    A   G+   +  K +        +R     +++K+      
Sbjct: 3   LQQKLQALRKEKGLTQEEFAETIGVSRQAVAKWEAGQSYPDLDRLIEISNLYKVSIDKLV 62

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           +   +                + I  L      +     S    +    + +   E    
Sbjct: 63  KDCKENCSFNEEKTYKDYADNEMICFLCKAKKVTYAGSGSETVSSRPNSHDLEYTEGNLK 122

Query: 127 HNGIY-----------------AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--- 166
           +   Y                  + + +   +  D      + K  + +++         
Sbjct: 123 YIDTYLGGEKFVGEEALWKDNVPVWSMNYIGRIIDEGFSGSFLKAALSLVSKDYPYRGPM 182

Query: 167 ---CGDRLLIKPRTGDI 180
               GD +      G+ 
Sbjct: 183 VYANGDYIYHCIVNGEF 199


>gi|210608450|ref|ZP_03287826.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787]
 gi|210153061|gb|EEA84067.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787]
          Length = 157

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            SH  +   I  + +   +    LA K G++  S +K +R        +P+ E++ KI+
Sbjct: 7  KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59

Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87
             + T  +LL   +     +EK+ 
Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84


>gi|15837102|ref|NP_297790.1| phage-related repressor protein [Xylella fastidiosa 9a5c]
 gi|9105353|gb|AAF83310.1|AE003899_2 phage-related repressor protein [Xylella fastidiosa 9a5c]
          Length = 143

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
            + +++  AI +  +   +TP+ +A   G+   S     + G   + + PS 
Sbjct: 1  MLTGEQLGRAIKQAMQLKGVTPTKMAEHFGVKAPSVYGWIKEGRISKEKLPSL 53


>gi|150391108|ref|YP_001321157.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149950970|gb|ABR49498.1| putative transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 89

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I ++     L+   LA K G   ++ ++ +     G    PS E + K+  A  + 
Sbjct: 29 IKKEIIQLRLAQGLSQKELAEKVGTKQSAISRLE-----GGEYNPSIEFLSKVAHALGKE 83

Query: 69 ICQLLD 74
          I     
Sbjct: 84 IHINFH 89


>gi|331082365|ref|ZP_08331491.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330400851|gb|EGG80452.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 90

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I  A+    +  N+T   LA K G+     ++ +        R PS + I ++      
Sbjct: 29 DIIRAMVAARKERNMTQKELAEKTGITQADISRIENGT-----RNPSLDMIKRLAKGMGM 83


>gi|319937527|ref|ZP_08011932.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1]
 gi|319807367|gb|EFW03976.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1]
          Length = 182

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  +  R+ L+   +A+   +   S +K ++   +     PST+++ ++    + +
Sbjct: 3   IGEKIRELRIRNQLSQESIAQLLDVSRQSVSKWEKGLSK-----PSTDNLLRLSEIFSVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT---------GNKWNTVG 119
           +  L+D      +  E        L+            G+F           G  ++T  
Sbjct: 58  VEDLIDNDIQFKKDYESTSFFKEFLFRKKVLIPISIFLGLFIVIFLFAVVMKGYGYDTNT 117

Query: 120 VPEIRSPHNG----IYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
           V  I           Y I              +   +    +++
Sbjct: 118 VNFIAGLSGFFMFCAYLIFLVMILKYVYKDCQMRHIQPIGYVLV 161


>gi|303230899|ref|ZP_07317643.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
 gi|302514412|gb|EFL56410.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
          Length = 91

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          AI +  E   LT   LA ++G+  ++  + +R          S +++ KI  A N
Sbjct: 35 AITKAREAAGLTQRELAERSGVPQSTIARIERGYNT------SIDTLSKIAFALN 83


>gi|313651389|gb|EFS15785.1| UmuD protein [Shigella flexneri 2a str. 2457T]
          Length = 70

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           ++ ++    G  ++     G+   K+L +     + LM  N  +    V    +E    +
Sbjct: 1   MDRSLTAEHGSIVVALVD-GEFTVKILQTFP--KLMLMPSNPAFKPIPVNPDTLEIWGVV 57


>gi|284045281|ref|YP_003395621.1| XRE family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949502|gb|ADB52246.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
           14684]
          Length = 201

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 40/135 (29%), Gaps = 5/135 (3%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +++   + ++ +   LT + +A  AG+  ++ ++ +        R  +   +  +  A 
Sbjct: 28  EERVRGRLRQLRDERGLTLAEVAFAAGMATSTLSRLETGA-----RRLTLAHLPALARAL 82

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                +L+  P                + F P    G                  P+   
Sbjct: 83  GIATDELVAAPRRAVAPDRSPWTTADGVTFVPLTEPGDGPRVCRLLLPAGLHHPAPKTHE 142

Query: 126 PHNGIYAIQTQDTRH 140
            H  ++ I  +    
Sbjct: 143 GHQRLHVIDGRLRLV 157


>gi|158335678|ref|YP_001516850.1| SOS mutagenesis protein UmuD [Acaryochloris marina MBIC11017]
 gi|158305919|gb|ABW27536.1| SOS mutagenesis protein UmuD, putative [Acaryochloris marina
           MBIC11017]
          Length = 81

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              GD+LI++ ++    G  ++I    G+   K L     ++I L + N  Y    V+  
Sbjct: 6   IFSGDLLIVDRSLTPVDG-AVVIAVLNGEFTVKQL-RLSQKTILLAAANADYTPIVVKAG 63

Query: 211 DIEWIARIL 219
               +  ++
Sbjct: 64  MEFQVWGVV 72


>gi|15837516|ref|NP_298204.1| hypothetical protein XF0914 [Xylella fastidiosa 9a5c]
 gi|9105835|gb|AAF83724.1|AE003931_1 hypothetical protein XF_0914 [Xylella fastidiosa 9a5c]
          Length = 141

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S + + + + + R+ E   L+   LA  +G+   S N    +G    ++ P   +I K
Sbjct: 16 MNSLAIRAVADNVRRLLEARRLSQKELAVLSGVSQKSINDLLNYGGT-VSKEPRLGTIEK 74

Query: 61 ILAATNETICQ 71
          +         Q
Sbjct: 75 LAKGFGIATWQ 85


>gi|326330669|ref|ZP_08196973.1| toxin-antitoxin system, antitoxin component, Xre family
           [Nocardioidaceae bacterium Broad-1]
 gi|325951510|gb|EGD43546.1| toxin-antitoxin system, antitoxin component, Xre family
           [Nocardioidaceae bacterium Broad-1]
          Length = 184

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 26/177 (14%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   I    E   +T + LA  +G+     +K +R   +     P+   + ++  A  
Sbjct: 4   DALAANIRSAREAAGMTVAALAEASGVSRAMISKIERGEAQ-----PTAVLLARLSGALE 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIR 124
            T+ +L+           +  +      +    +G    +   P         V  P   
Sbjct: 59  LTLSELIARVE---GDAVRVARRAEQPEWTDPETGYVRRAVSPPAREILELVEVEFPAGA 115

Query: 125 S--PHNGIYAIQTQDTRH------KTQDTSM--------LPLYRKGDILILNSAIQV 165
           S       YA + Q            +   +        L L    D + +N   + 
Sbjct: 116 SVAAPASAYAFKEQQIWVLSGHLRFVEGDLVHELDAGDCLQLGPPADCVFVNPTDEP 172


>gi|302388210|ref|YP_003824032.1| transcriptional regulator, XRE family [Clostridium saccharolyticum
           WM1]
 gi|302198838|gb|ADL06409.1| transcriptional regulator, XRE family [Clostridium saccharolyticum
           WM1]
          Length = 177

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 14/138 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +     LT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2   DIGAKLKELRVLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLLDILQCLGT 56

Query: 68  TICQLLDLPFS--------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++ +  +            D       E +  + +  P+      +  +        T  
Sbjct: 57  SVGEFFNESPEEQIVFGKSDYFEKHDAELKNAIKWIIPNAQKNMMEPILLTLEAGGETYP 116

Query: 120 VPEIRSPHNGIYAIQTQD 137
                      Y +Q   
Sbjct: 117 -DNPHEGEEFGYVLQGNI 133


>gi|225019513|ref|ZP_03708705.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum
           DSM 5476]
 gi|224947734|gb|EEG28943.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum
           DSM 5476]
          Length = 154

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T F+H      + ++     LT + LA+   +   +    +     G  R P   ++ ++
Sbjct: 45  TMFAH-----RLRQLRLERGLTQAALAKHLDVSQGTVGNWE-----GGKREPDFATVARL 94

Query: 62  LAATNETICQ 71
            A    T+  
Sbjct: 95  AALFGTTVDD 104


>gi|160945921|ref|ZP_02093147.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443652|gb|EDP20657.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium
          prausnitzii M21/2]
          Length = 169

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I R  ++  L+   LA K G+   +  K +          P  E I  +      +  
Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLA-----SPELEKIVSLSECFKVSTD 66

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           LL    ++    ++   +        +
Sbjct: 67 YLLKDNLTEPTPPQESALKGKQRMSWRA 94


>gi|89097356|ref|ZP_01170246.1| post-exponential-phase response transcriptional regulator
          [Bacillus sp. NRRL B-14911]
 gi|89088179|gb|EAR67290.1| post-exponential-phase response transcriptional regulator
          [Bacillus sp. NRRL B-14911]
          Length = 115

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I R+      + + LA K+G+  +  +  +R       + PS + + K+ A    +
Sbjct: 2  VGERIKRLRLLRGFSINELAEKSGVSKSYLSYIERDI----QKNPSLQVLSKLAATLGTS 57

Query: 69 ICQ 71
          + +
Sbjct: 58 VEE 60


>gi|282865815|ref|ZP_06274865.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282559459|gb|EFB65011.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 721

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 46/153 (30%), Gaps = 10/153 (6%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
           +R+ + H LT   +A    +   +    +    E   R P  E+  ++L    E      
Sbjct: 25  ERLRKAHGLTQEQVAAALKVRRPTVVSWENGRTE--PRPPQREAYARLLEKLAELYPARA 82

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR------SPH 127
                D    E  +     +    +     F     P G    TV  P  +      S  
Sbjct: 83  ADDAEDTHEAEAPQTSG--VPASTTAPHAPFTPPPAPEGTGAPTVEHPPRQAVAARPSTG 140

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
           +   A +    R      +  P +  G + +++
Sbjct: 141 SRPSASRRPAARKAAPKDTHDPRFENGPLAVVD 173


>gi|169828759|ref|YP_001698917.1| Signal peptidase I T [Lysinibacillus sphaericus C3-41]
 gi|168993247|gb|ACA40787.1| Signal peptidase I T [Lysinibacillus sphaericus C3-41]
          Length = 188

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGRSIDL--- 195
            K Q  SM P Y   DI+I++   ++      +   P   ++  K +I   G  +++   
Sbjct: 40  IKVQGASMYPTYHDKDIIIVSKTSKIERFDQIVFQSPVEDELYIKRVIGLPGDKVEMKDD 99

Query: 196 ------MSLNCCYPVDTV-EMSDIEW 214
                  + N  Y      + + +  
Sbjct: 100 VLYVNGKAYNEDYVNRETDDPNQLRI 125


>gi|160884374|ref|ZP_02065377.1| hypothetical protein BACOVA_02352 [Bacteroides ovatus ATCC 8483]
 gi|255691687|ref|ZP_05415362.1| putative helix-turn-helix protein [Bacteroides finegoldii DSM
          17565]
 gi|156110113|gb|EDO11858.1| hypothetical protein BACOVA_02352 [Bacteroides ovatus ATCC 8483]
 gi|260622760|gb|EEX45631.1| putative helix-turn-helix protein [Bacteroides finegoldii DSM
          17565]
          Length = 150

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I EAI++      L+ S L RK G+     N+          R      + K+  A    
Sbjct: 10 IGEAIEKRRNELGLSKSELGRKIGVPQQHVNRILERETMETKR------LIKVSEALGFN 63

Query: 69 ICQLLDLPFSD 79
             L       
Sbjct: 64 FFTLFCPVQHQ 74


>gi|259418297|ref|ZP_05742215.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
 gi|259345692|gb|EEW57536.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
          Length = 190

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + +  + E+  ++   LA+K G+  ++ +  +   +      PS  ++ +IL     
Sbjct: 12 ELGQRLRAVREQSGVSQRALAKKTGVPNSTISLIESGKMN-----PSVGALRRILDGVPI 66

Query: 68 TICQLLDLP 76
          ++ +     
Sbjct: 67 SLSEFFAFE 75


>gi|283796930|ref|ZP_06346083.1| toxin-antitoxin system, antitoxin component, Xre family
           [Clostridium sp. M62/1]
 gi|291075340|gb|EFE12704.1| toxin-antitoxin system, antitoxin component, Xre family
           [Clostridium sp. M62/1]
          Length = 111

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 5/107 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+I + + +  ER  ++   LA K GL     +  +R        +P  E +  +L    
Sbjct: 4   KRIGKRVKQCRERLGISQEELAEKTGLTANYISTVERGMS-----FPRCEKLIILLNGLE 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            +   +         + +  E    L    P                
Sbjct: 59  VSADAIFCDVLEHSTSYKSSELSEKLASLSPQAQKRILQMVELMIQQ 105


>gi|83645643|ref|YP_434078.1| hypothetical protein HCH_02876 [Hahella chejuensis KCTC 2396]
 gi|83633686|gb|ABC29653.1| hypothetical protein HCH_02876 [Hahella chejuensis KCTC 2396]
          Length = 229

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 70/229 (30%), Gaps = 19/229 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLT------PSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           M + +  +I     R     +++         L +K G   +  ++  +       +   
Sbjct: 3   MGTLNISEIRRINLRKIAEKHVSGHDRKGYQALTKKIGCHHSYLSQILKENP---TKDIG 59

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                K   A       L   P+         ++E  +       +  F  +   P    
Sbjct: 60  PGFARKAEKALGLEPHSLDTPPWLSNLKDNIPDREQSIQEGIIKVAETFLITTTLPVMEV 119

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
            N       ++ H    A   +       D SM P+  +  ++ ++ A+ +  G   L  
Sbjct: 120 VNGNLKETGQTRHILGNASD-RAFITHAIDRSMEPIINQHQLIAVDPALPLEDGVICLYW 178

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDI---EWIARIL 219
              G ++ K L    G   ++   N   Y    +  + +   +++ RI 
Sbjct: 179 DGGGAVMGKYLGRNGG---EIHPANEDRYRPIYL--NQVTGGKYLGRIF 222


>gi|83593377|ref|YP_427129.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170]
 gi|83576291|gb|ABC22842.1| Transcriptional Regulator, XRE family with Cupin sensor domain
          [Rhodospirillum rubrum ATCC 11170]
          Length = 188

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + E   L+   LAR+AG+   + +  ++         PS  S+ K+L     
Sbjct: 4  DVGARLRAIREAKALSQRELARRAGVTNGTISLIEQNQS-----SPSVASLRKVLQGIPM 58

Query: 68 TICQLLDLPFSDGRT 82
          T+ +           
Sbjct: 59 TLAEFFSQETPPPDQ 73


>gi|139438005|ref|ZP_01771558.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC
          25986]
 gi|133776202|gb|EBA40022.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC
          25986]
          Length = 238

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + +  +      +  GLARK GL   + +K +R         P TE++  +      ++ 
Sbjct: 7  QRLADLRRSKGFSQEGLARKLGLSRQAVSKWERAES-----SPDTENLISLAKLYGVSLD 61

Query: 71 Q 71
          +
Sbjct: 62 E 62


>gi|326331111|ref|ZP_08197409.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951152|gb|EGD43194.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 181

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 49/187 (26%), Gaps = 9/187 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++   +  + +   +T   LA    L     ++ +R         PS  S+F+I     
Sbjct: 2   QRLGSRVRELRKAQGMTLVQLAEATDLSHPFLSQIERGMAR-----PSMSSLFRIAQTLG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            T   LL                        + +G          G     + +  +   
Sbjct: 57  TTQQGLLADSVESPSAGPAAVVRRSDPGTAEASNGAV---QALVAGADHAFIPMEFVGDE 113

Query: 127 -HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                Y    +D        ++       + ++  +      G            + ++L
Sbjct: 114 TSWDRYWQHEEDEFVYVVGGTLRIDLDGEEQVMETADSVYIPGGVRHRWASADGELFRLL 173

Query: 186 ISRRGRS 192
           + +  R 
Sbjct: 174 VVKEQRG 180


>gi|307946613|ref|ZP_07661948.1| helix-turn-helix domain-containing protein [Roseibium sp.
          TrichSKD4]
 gi|307770277|gb|EFO29503.1| helix-turn-helix domain-containing protein [Roseibium sp.
          TrichSKD4]
          Length = 130

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +   + E I R  +   L+ + LAR+ G+  ++    +    E   R      +  
Sbjct: 14 MPETTDYTLGERICRARDAAGLSTAQLARRLGVKSSTLQGWESDRSE--PRSNKLVLLAG 71

Query: 61 ILAATNET 68
          +L  +   
Sbjct: 72 VLNVSPTW 79


>gi|300118308|ref|ZP_07056055.1| transcriptional regulator [Bacillus cereus SJ1]
 gi|298724277|gb|EFI64972.1| transcriptional regulator [Bacillus cereus SJ1]
          Length = 373

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 54/194 (27%), Gaps = 14/194 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I++ I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIYKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             N +I +L+      G+   K         F                   ++   +   
Sbjct: 56  YFNISIDELICYTPQMGQEDIKNLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPL--- 112

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182
                 +  +              + +  +   L      +   GD  L+ +  T     
Sbjct: 113 ---LLQMGLLFINHHMLTGDTDKRIEILEEAMSLFSRVQEE--SGDVSLVKEAVTFQATC 167

Query: 183 KVLISRRGRSIDLM 196
            ++++R    + L+
Sbjct: 168 YLILNRPNEVLQLL 181


>gi|290957472|ref|YP_003488654.1| hypothetical protein SCAB_29922 [Streptomyces scabiei 87.22]
 gi|260646998|emb|CBG70097.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 144

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179
           PE+        A+       +    SM+P  R GD L+++   ++  GD L+++      
Sbjct: 2   PELSRESERGGALLPFGVA-EVTGPSMVPTLRHGDRLLVHYGARLRVGDVLVLRHPFQQD 60

Query: 180 -IVAKVLISRRGRSIDLMSLNCCYP-----VDTVEMSDIEWIARI 218
            +V K +  RR     ++  N  Y         V   ++  + R+
Sbjct: 61  LLVVKRVAERRDGGWWVLGDN-AYAGGDSTDYGVVPDEL-VLGRV 103


>gi|228477738|ref|ZP_04062367.1| conserved domain protein [Streptococcus salivarius SK126]
 gi|228250627|gb|EEK09838.1| conserved domain protein [Streptococcus salivarius SK126]
          Length = 69

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          ++   +  +  R  L  S LA+ AG+   S +  +R     
Sbjct: 2  RLKNRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTP 42


>gi|225628403|ref|ZP_03786437.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo]
 gi|237816216|ref|ZP_04595211.1| Cro/CI family transcriptional regulator [Brucella abortus str.
          2308 A]
 gi|225616249|gb|EEH13297.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo]
 gi|237788678|gb|EEP62891.1| Cro/CI family transcriptional regulator [Brucella abortus str.
          2308 A]
          Length = 652

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +  +I   + R+ +R  LT  GLA  + +   + +  +          P  E+++ 
Sbjct: 1  MTMSNSAEIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWS 55

Query: 61 ILAATNETICQ 71
          +  A      +
Sbjct: 56 LANALGIEFGE 66


>gi|226325896|ref|ZP_03801414.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758]
 gi|225206020|gb|EEG88374.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758]
 gi|291546627|emb|CBL19735.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 129

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I    ++  L+   LA  A L     +  +        R PS ES+ KI  A   T
Sbjct: 8  IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENA-----KRKPSLESLIKISNALEIT 62

Query: 69 ICQLLDLPFSDGRTTE 84
          I +LL        T  
Sbjct: 63 IDELLYGNLLYNPTEY 78


>gi|153812213|ref|ZP_01964881.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174]
 gi|149831620|gb|EDM86707.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174]
          Length = 112

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I R  +   L  S +  KAGL     +  +R         PS E I K+    N 
Sbjct: 11  EIGKRIARRRKALGLKQSEVEEKAGLGQKYLSNIERSISI-----PSIEVIMKLAYVLNT 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           T  + L    +      KK  E+         +            +
Sbjct: 66  TPDEFLIGTLNSNDEEWKKSAELLRPLNSKQLNLVHNFLIWLSEQD 111


>gi|302562106|ref|ZP_07314448.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces griseoflavus Tu4000]
 gi|302479724|gb|EFL42817.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces griseoflavus Tu4000]
          Length = 194

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 49/170 (28%), Gaps = 20/170 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  +   H  +   LA ++G+  ++ ++++R         P+   + ++ A    
Sbjct: 16  RLGGRLAELRIEHGWSLGELAERSGISRSTLSRAERAET-----SPTASLLNRLCAVYGR 70

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-----------GGFFDSGVFPTGNKWN 116
           T+ QLL    ++     +   +                       G    G    G   +
Sbjct: 71  TMSQLLSEIEAEPAPLVRAADQPVWEDRASGFVRRSVSPPHRGLRGELVEGRLAVGADIS 130

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
               P +      I+ ++                  +GD L L       
Sbjct: 131 Y-DRPPVPGLEQHIWVLEGS---LTVTAQDAEHRLGEGDCLRLRVWGPTR 176


>gi|239930441|ref|ZP_04687394.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438799|ref|ZP_06578189.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341694|gb|EFE68650.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 191

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +  A   +   L           ++ E E   +    
Sbjct: 56 VAKALRISAETLYVRAGILDAERDRDEVETRAVLLAD 92


>gi|126697864|ref|YP_001086761.1| DNA-binding protein [Clostridium difficile 630]
 gi|255099463|ref|ZP_05328440.1| DNA-binding protein [Clostridium difficile QCD-63q42]
 gi|255305320|ref|ZP_05349492.1| DNA-binding protein [Clostridium difficile ATCC 43255]
 gi|115249301|emb|CAJ67114.1| Transcriptional regulator, HTH-type [Clostridium difficile]
          Length = 364

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 14/198 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +    +   +T   LA   G+   S +K +         +P    + ++    N 
Sbjct: 5   NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQS-----YPDITFLPQLATYFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T+ +L+       +    K        F         D         ++   +       
Sbjct: 60  TVDELICYEPQMMKEDINKLYNKLCKDFTVKPFDEVMDEIREIIKKYYSCFPLIFRM--- 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
            G+  +   D      +     L  +   + +      N  D    + ++ +    +L++
Sbjct: 117 -GLLIVNHYDI---VDEKKRELLISEALEIFIRIQETCNDIDIC-RQAKSMEATCYILLN 171

Query: 188 RRGRSIDLMSLNCCYPVD 205
           +  + IDL+  N  +P+ 
Sbjct: 172 QPIQVIDLLQ-NSNFPMI 188


>gi|323352640|ref|ZP_08087610.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|322121676|gb|EFX93422.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|332362630|gb|EGJ40428.1| transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 69

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 2  KLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 56

Query: 68 T 68
           
Sbjct: 57 N 57


>gi|311278399|ref|YP_003940630.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
          SCF1]
 gi|308747594|gb|ADO47346.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 76

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +    + ++  +  L+    A K GLD T  +  +R       R P+ E I  +    
Sbjct: 8  QAQFGAHLKKLRLQSGLSQEAFADKCGLDRTYVSGIERGV-----RNPTLEVIGVLAKGL 62

Query: 66 NETICQLLDLPF 77
             I +L     
Sbjct: 63 GMDIKELFSFER 74


>gi|251790166|ref|YP_003004887.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538787|gb|ACT07408.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 76

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  +  +  L+    A K GLD T  +  +R       R P+ E ++ + A  +  
Sbjct: 11 LGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGV-----RNPTLEVLYILAAGLHTD 65

Query: 69 ICQLLDLPFS 78
          +  L      
Sbjct: 66 LTTLFVFRDP 75


>gi|210621510|ref|ZP_03292670.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275]
 gi|210154709|gb|EEA85715.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275]
          Length = 136

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I  + +   +T   LA+K G+   + +K +R        +P   SI K+    + ++
Sbjct: 7   GEMISSLRKDRGMTQLDLAKKMGVTDKAVSKWERDLS-----FPDINSIPKLAEIFDVSV 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            +L+ +        E+  KE            G   +     
Sbjct: 62  DELMQVKSDVNVGEEEVVKESKFEEVMDVAPKGIGLAMGIAV 103


>gi|197105530|ref|YP_002130907.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
 gi|196478950|gb|ACG78478.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
          Length = 128

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +   L+   LA  AG+      K +R          S   + +I       
Sbjct: 16 VGARIRLLRKLKGLSQQALAEAAGVTFQQIQKYERGANR-----VSASMLARIARTLGVP 70

Query: 69 ICQLL 73
          + ++ 
Sbjct: 71 VAEMF 75


>gi|94971398|ref|YP_593446.1| hypothetical protein Acid345_4372 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553448|gb|ABF43372.1| hypothetical protein Acid345_4372 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 238

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +++   +    ++  LT   LA K G      +           R  S +++ +ILAA 
Sbjct: 8   QEQLRRLLRSRIDQGELTGMMLAEKTGFRQAHISNFLNH-----KRGLSFDAVDRILAAE 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + ++  L+     + R +     E              F             +   +   
Sbjct: 63  DLSVLDLVPADDINSRASIPPPPEDEYANILLVSPQRAFQP-QVHAREVLEVLKFKQTFL 121

Query: 126 PHNGIYAIQTQDTRH--------KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLI 173
                   + + T          +    +M P    G  ++L+           G++ + 
Sbjct: 122 RRMKAEPSRQRATWLRFVMMKTSRACTEAMSPRVGPGCTVLLDRHYNSLTAYRKGEKTMY 181

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDIE----WIARILWAS 222
             R G         R    + L   +       +   SD+      + R+ + S
Sbjct: 182 AIRVGGDTIVRYAHRDDDMLVLEPESRDARTRILHIPSDLTAEDLIVGRVAYVS 235


>gi|326791705|ref|YP_004309526.1| hypothetical protein Clole_2627 [Clostridium lentocellum DSM
          5427]
 gi|326542469|gb|ADZ84328.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 176

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I    ++  LT   LA++ G+   +  K ++       R P+ E+I K+      T
Sbjct: 2  LGNNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGE-----REPNLETIEKLAVTLKVT 56

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
            +LL    +          E
Sbjct: 57 PYELLGNLNNSVALNHAPMAE 77


>gi|293606756|ref|ZP_06689108.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553]
 gi|292814847|gb|EFF73976.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553]
          Length = 184

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 10/163 (6%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  +  +  L+   LA++ GL  +  +K +R   E     PS  ++ ++  A    + Q
Sbjct: 7   RLRTLRRQQALSLEQLAQRTGLTKSYLSKLERGLSE-----PSISTVLRLAEAYGVGVSQ 61

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L+    +         +          G G  +       G++      P +  P     
Sbjct: 62  LVGADDAAQDEVVSVVRVADREALQRGGPGSQYHYESL-AGHRKIKAMEPFVVHPPRDF- 119

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNCGDRLLI 173
                           L + +    + +     ++  GD +  
Sbjct: 120 --PDAAAVFPHPGEEFLLVLKGAIEVQVGERQFRLETGDSVYF 160


>gi|325678958|ref|ZP_08158556.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324109462|gb|EGC03680.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 181

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 50/210 (23%), Gaps = 44/210 (20%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +       +LT + L+++ G+  +  ++        + R     ++ + L  T   + 
Sbjct: 6   ENLRAAMAERSLTQAELSKRTGISKSFISQYLSGKF--KPRDDKLSALAQALGTTKGALL 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                                                  P  +  +    P         
Sbjct: 64  GYESR-------------------SADGVENVASGIIKVPVYSADD----PHNAWGEEYA 100

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI--SR 188
            A       +  +D    P    GD L+++       G   ++K     +  +      R
Sbjct: 101 GAEHGNYRFYICRDDKNRPFVMFGDYLLVSVDEIGPTGLYAVVKEGVERVYFREFSEPRR 160

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
               + L                   I R+
Sbjct: 161 EANELGLR-----------------IIGRV 173


>gi|291454087|ref|ZP_06593477.1| signal peptidase [Streptomyces albus J1074]
 gi|291357036|gb|EFE83938.1| signal peptidase [Streptomyces albus J1074]
          Length = 156

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRS 192
            +    +    SM+P    GD L++    +V  GD ++++       +V K  + RR   
Sbjct: 21  GRFGVVEVDGPSMVPTLEHGDWLLVRYGARVRPGDVVVLRHPFQQDLLVVKRAVERREGG 80

Query: 193 IDLMSLN 199
             ++  N
Sbjct: 81  WWVLGDN 87


>gi|167565153|ref|ZP_02358069.1| aldehyde dehydrogenase-like protein [Burkholderia oklahomensis
           EO147]
          Length = 183

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 19/195 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            ++   +  +  ++ L+   LA++AG+   + +  ++         PS  S+ K+L    
Sbjct: 3   NEVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQ-----SRVSPSVGSLKKLLECIP 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++ +       + R+   +  E+P L     G                  V  P +   
Sbjct: 58  MSLAEFFTFEVDEDRSVVSRRGEMPNLGNDAIGFYLAGSGVKDRNMCIMREVYQP-LADT 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              + A    +          L +   G   +L+       GD    + R          
Sbjct: 117 GTEMLAHAGHEGGVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFR 164

Query: 187 SRRGRSI-DLMSLNC 200
           +     + +++S N 
Sbjct: 165 NPSAEHVCEVVSANS 179


>gi|83589152|ref|YP_429161.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572066|gb|ABC18618.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 101

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  + E+H+LT   LA+ +G+  +  ++ +       ++ P+T ++ KI +A   T
Sbjct: 3  LGNRLKELREKHHLTQYRLAKLSGVSQSHISEIESG-----DKEPTTGTLMKICSAMGLT 57

Query: 69 ICQLLDLPFSDGRT 82
          + +           
Sbjct: 58 LAEFFTEETPSLPP 71


>gi|29654276|ref|NP_819968.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA
           493]
 gi|161830755|ref|YP_001596754.1| DNA-binding protein [Coxiella burnetii RSA 331]
 gi|212212602|ref|YP_002303538.1| transcriptional regulator [Coxiella burnetii CbuG_Q212]
 gi|29541543|gb|AAO90482.1| transcriptional regulator [Coxiella burnetii RSA 493]
 gi|161762622|gb|ABX78264.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA
           331]
 gi|212011012|gb|ACJ18393.1| transcriptional regulator [Coxiella burnetii CbuG_Q212]
          Length = 183

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +   ++   LA  AG+  +   K +   ++     P+ +   K+  A  +T+ 
Sbjct: 6   ERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQ-----PTLDVAGKLAVALGKTLS 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPE--IRSP 126
           ++   P +    +  +        +  + +    +      G+K     V  P     + 
Sbjct: 61  EMFHSPQT---PSVIQLTTEEQAIWIDAQNIKRRNISPILEGSKVEWLFVEFPPGASLTK 117

Query: 127 HNGIYAIQTQDTRHKTQD 144
               Y  +T+     T+ 
Sbjct: 118 PLTPYTPETEKYILITKG 135


>gi|320159692|ref|YP_004172916.1| hypothetical protein ANT_02820 [Anaerolinea thermophila UNI-1]
 gi|319993545|dbj|BAJ62316.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
          Length = 798

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                  SM PL+ KGD+++L  A     GD ++ +      V   ++ RR     L   
Sbjct: 39  YVIVSGDSMEPLFHKGDLVLLRRAPFYEVGDIVVYRYPGIGAVIHRIVDRRLDRFVLKGD 98

Query: 199 N----CCYPVDTVEMSDI 212
           +      Y        +I
Sbjct: 99  HNTWVDGYEP---APDEI 113


>gi|291441034|ref|ZP_06580424.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
 gi|291343929|gb|EFE70885.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
          Length = 190

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 5/138 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   + R+ +   +T + L+   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 9   DVGPRLRRIRKEREVTLAALSEATGISVSTLSRLESG-----LRRPSLELLLPIAQAHQV 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L+  P         K  E       P                +      P     +
Sbjct: 64  PLDELVGAPPVGDPRVRSKPIERYGRTHWPLTRQPGGLQAYKVLEPRRKLEPEPRTHEGY 123

Query: 128 NGIYAIQTQDTRHKTQDT 145
             +Y +  +      ++ 
Sbjct: 124 EWLYVLSGRLRLVLGEND 141


>gi|289770224|ref|ZP_06529602.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289700423|gb|EFD67852.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 154

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 14  MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 68

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           +  A   +   L           ++++ E   +    
Sbjct: 69  VAKALRISAETLYVRAGILDAERDREDVETRAVILAD 105


>gi|170755295|ref|YP_001781771.1| transcriptional regulator [Clostridium botulinum B1 str. Okra]
 gi|169120507|gb|ACA44343.1| transcriptional regulator [Clostridium botulinum B1 str. Okra]
          Length = 149

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I ++ +  ++T   LA+  G+  +     +        R PS E + KI      +
Sbjct: 4  ERIKKLRKERDITQEELAKNIGVSTSMVGMYETNA-----RKPSYEVLSKIAKYFRVS 56


>gi|83589146|ref|YP_429155.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572060|gb|ABC18612.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 128

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  + E+  LT   LA +  +  ++    +        R P  E + +   A N +
Sbjct: 3  IGKRIKELREKIGLTQEELAERVQISRSALANYESGY-----REPKGEILVRFAKALNTS 57


>gi|47565513|ref|ZP_00236554.1| transcriptional regulator, putative [Bacillus cereus G9241]
 gi|47557503|gb|EAL15830.1| transcriptional regulator, putative [Bacillus cereus G9241]
          Length = 181

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +                K++K I         S  F  +           + VP   +  
Sbjct: 63  SFLLEDTNTDDLIVRPHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
             +   + ++       
Sbjct: 117 ENLLEHKGEELAFVLDG 133


>gi|317062103|ref|ZP_07926588.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
 gi|313687779|gb|EFS24614.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
          Length = 184

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I +      L+   LA K  L  +  ++ ++         PS E++ KI  + +  
Sbjct: 5   IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKA-----SPSIENLKKIATSLDVK 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  L++           K+ E   +    S +      +       +     +       
Sbjct: 60  VSYLIEDEEETRNMEVVKKDERKYIESIDSNTKMALLTTSNIDKTMEPILYEIGPNGESG 119

Query: 128 NGIYAIQTQDTRHKTQD 144
              Y    ++     + 
Sbjct: 120 RSFYTHNGEEFIFIIEG 136


>gi|307329866|ref|ZP_07609020.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306884477|gb|EFN15509.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 140

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L            ++ +   ++
Sbjct: 56 LAKALRISAETLYVQAGILDERDREETEVRSVI 88


>gi|228920539|ref|ZP_04083884.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839169|gb|EEM84465.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 181

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + K++K I         S  F  +           + +P   +  
Sbjct: 63  SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTIPPNTASS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
             +   + ++       
Sbjct: 117 ENVLEHKGEELAFVLDG 133


>gi|317054283|ref|YP_004118308.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
 gi|316952278|gb|ADU71752.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 192

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +    E+   + + LA  +G+     +K +R         P+   + ++  + + 
Sbjct: 15  RIGQKVKAEREKRGWSLTDLAENSGVSRAMIHKIERGES-----SPTATLLARLAGSFDM 69

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ QL+ L      T  ++ ++                 G  P      +V +P   S  
Sbjct: 70  SMSQLIALSEVQTGTLIRQAQQPVWQDPETGYIRRHVSPGQIPVDLV--SVDLPAGVSVP 127

Query: 128 NGIYAIQTQDTRHKT 142
               +  ++      
Sbjct: 128 MPAISYLSRRQLIWV 142


>gi|257467814|ref|ZP_05631910.1| MerR family transcriptional regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 183

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I +      L+   LA K  L  +  ++ ++         PS E++ KI  + +  
Sbjct: 4   IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKA-----SPSIENLKKIATSLDVK 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS-GGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  L++           K+ E   +    S +      +       +     +       
Sbjct: 59  VSYLIEDEEETRNMEVVKKDERKYIESIDSNTKMALLTTSNIDKTMEPILYEIGPNGESG 118

Query: 128 NGIYAIQTQDTRHKTQD 144
              Y    ++     + 
Sbjct: 119 RSFYTHNGEEFIFIIEG 135


>gi|237733521|ref|ZP_04564002.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383354|gb|EEO33445.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 211

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            SH  +   I  + +   +    LA K G++  S +K +R        +P+ E++ KI+
Sbjct: 7  KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59

Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87
             + T  +LL   +     +EK+ 
Sbjct: 60 EVLDVTPNELLSGEWKYINQSEKEV 84


>gi|111220424|ref|YP_711218.1| putative DNA-binding protein [Frankia alni ACN14a]
 gi|111147956|emb|CAJ59622.1| Putative DNA-binding protein (partial match) [Frankia alni
          ACN14a]
          Length = 328

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + + + + + I        ++   LA++AG+     ++ +R       R PS E + +
Sbjct: 1  MAALNVRDLGDFIRDQRRAAQISLRQLAKQAGVSNPYLSQIERG-----LRRPSAEILQQ 55

Query: 61 ILAATNET 68
          I  A   +
Sbjct: 56 IAKALRIS 63


>gi|332654130|ref|ZP_08419874.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium
           D16]
 gi|332517216|gb|EGJ46821.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium
           D16]
          Length = 259

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     ++++E    + ++  L+  GLA   G+   +  K +          P  +++  
Sbjct: 1   MEMEFQQRLYE----LRKQSGLSQEGLADLLGVSRQAVQKWEAGTSR-----PDLDNLAA 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
           +    N ++  L+    +    ++     +   Y P     
Sbjct: 52  LGRYFNVSLDYLVTGQEAQVSPSQVTTTIVNNYYTPFHYEY 92


>gi|328954168|ref|YP_004371502.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454492|gb|AEB10321.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 172

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           +  I  + ++  +T   LAR+A L   +  K +     G +  P+ E+I  + +    T 
Sbjct: 6   FSIIRTLRKKRGITAEELARRANLTRATVAKIE-----GGDSNPTIETIEALSSVFQLTS 60

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +L+ L           +      +         F+               PE       
Sbjct: 61  SELIRLAEVVHCEMAITKTFAADGFKGHHIWFPSFEVYCIRADAGIRKESDPEFHENTAE 120

Query: 130 IYAIQTQDTRHKTQDTS 146
           I  + + + +   +  S
Sbjct: 121 ICLVLSGEVKVTVRGQS 137


>gi|319936497|ref|ZP_08010913.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319808612|gb|EFW05164.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 241

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K++E +  + ++   +    A   G+   S +K +          P  E + +I      
Sbjct: 2  KLYENLSSLRKQKGYSQEEFAYLLGVSRQSVSKWESGASI-----PELERLVEIANIFEV 56

Query: 68 TICQ 71
          ++ +
Sbjct: 57 SLDE 60


>gi|194017717|ref|ZP_03056327.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC
           7061]
 gi|194010617|gb|EDW20189.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC
           7061]
          Length = 113

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I +       + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 4   IGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           +  LL          +   +   L+    +          F     W
Sbjct: 60  VHTLLHEKDETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQIW 106


>gi|86361163|ref|YP_473050.1| MerR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86285265|gb|ABC94323.1| putative transcriptional regulator protein, MerR family [Rhizobium
           etli CFN 42]
          Length = 203

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +   H L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 25  DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 79

Query: 68  TICQLLDLPFSDGRTTEKKEKE 89
            + +         +      +E
Sbjct: 80  GLAEFFAFEPERPKKAFYAAQE 101


>gi|86143509|ref|ZP_01061894.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis
          MED217]
 gi|85829956|gb|EAQ48417.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis
          MED217]
          Length = 71

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI   I ++ E+   T S LAR+ G D  +  K +   +      P+  S+F+I  A  
Sbjct: 8  KKIGNRIVKLREQKGWTQSDLARECGKDRQAIEKLENGKVN-----PTAYSLFEISKALK 62

Query: 67 ETICQ 71
            + Q
Sbjct: 63 IELYQ 67


>gi|71276456|ref|ZP_00652732.1| Helix-turn-helix motif [Xylella fastidiosa Dixon]
 gi|71901271|ref|ZP_00683370.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
 gi|170731009|ref|YP_001776442.1| XRE family transcriptional regulator [Xylella fastidiosa M12]
 gi|182682388|ref|YP_001830548.1| helix-turn-helix domain-containing protein [Xylella fastidiosa
          M23]
 gi|71162772|gb|EAO12498.1| Helix-turn-helix motif [Xylella fastidiosa Dixon]
 gi|71728962|gb|EAO31094.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
 gi|167965802|gb|ACA12812.1| putative transcriptional regulator, XRE family [Xylella
          fastidiosa M12]
 gi|182632498|gb|ACB93274.1| helix-turn-helix domain protein [Xylella fastidiosa M23]
 gi|307578669|gb|ADN62638.1| hypothetical protein XFLM_03235 [Xylella fastidiosa subsp.
          fastidiosa GB514]
          Length = 126

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S + + + + + R+ E   L+   LA  +G+   S N    +G    ++ P   +I K
Sbjct: 1  MNSLAIRAVADNVRRLLEARRLSQKELAALSGVSQKSINDLLNYGGT-VSKEPRLGTIEK 59

Query: 61 ILAATNETICQ 71
          +         Q
Sbjct: 60 LAKGFGIATWQ 70


>gi|296141343|ref|YP_003648586.1| XRE family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296029477|gb|ADG80247.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
           DSM 20162]
          Length = 466

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/100 (9%), Positives = 23/100 (23%), Gaps = 5/100 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + +   L+ + LA    + P+  N+ +        R  S   + KI       
Sbjct: 6   VGARLRGLRKERGLSQASLAEALEISPSYLNQIEHDV-----RPLSVPVLLKITDVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
                    +      ++                      
Sbjct: 61  TSFFNSQDQTRLIAELREVTMDVDAPTSTEELSDLARDHP 100


>gi|220909139|ref|YP_002484450.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219865750|gb|ACL46089.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
          Length = 81

 Score = 49.4 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + + + I + +  + +R  L+   LA + G+   S N+ +           + + I K
Sbjct: 1  MPART-EGIADRLRGLRQRLGLSQQQLATQLGVSFRSVNRWENGHAVPLP--LALKQIEK 57

Query: 61 ILAATN 66
          +     
Sbjct: 58 LQQELE 63


>gi|332983435|ref|YP_004464876.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332701113|gb|AEE98054.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 127

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + E   ++ + LA   G+   + +  +        R P  ++I KI      +I
Sbjct: 1  MNRIKELREEAKISQAELASILGVTQQALSNYENG-----LREPDLDTINKIANYFGVSI 55

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLL 93
            LL           ++  +    
Sbjct: 56 DYLLCRTNVRNSDVIEEAIKDDPE 79


>gi|160932466|ref|ZP_02079856.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753]
 gi|156868425|gb|EDO61797.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753]
          Length = 114

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 5/107 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +     +  E+  LT   LA K GL P   +  +R        +PS E +  I+     T
Sbjct: 10  VGSRFKQYREQSGLTQETLAEKVGLSPNYISAIERGVN-----FPSLEKLILIINEIGAT 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
             Q+      +   T        +   P       F           
Sbjct: 65  ADQIFTDVIKNTYQTRASFLSEKVESLPFDEQQRIFAVVETLISEAD 111


>gi|319957536|ref|YP_004168799.1| peptidase s24/s26a/s26b, conserved region [Nitratifractor
           salsuginis DSM 16511]
 gi|319419940|gb|ADV47050.1| Peptidase S24/S26A/S26B, conserved region [Nitratifractor
           salsuginis DSM 16511]
          Length = 237

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-RS 192
           +      +    SM+P+      +I   AI+    D L +   + +++ K+L        
Sbjct: 145 KGPIRLMQVDGYSMVPMLYPDSWVIYEDAIEYTV-DGLYVINYSNELMVKLLQFNPEEDV 203

Query: 193 IDLMSLNCCYPVDTVEMSD---IEWIARIL 219
           ++++S N  Y    V   D    + + ++L
Sbjct: 204 LEIISKNPEYKSWKVRPGDQSTFQIVGKVL 233


>gi|307129603|ref|YP_003881619.1| MunI regulatory protein [Dickeya dadantii 3937]
 gi|306527132|gb|ADM97062.1| MunI regulatory protein [Dickeya dadantii 3937]
          Length = 76

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  +  +  L+    A K GLD T  +  +R       R P+ E ++ +    +  
Sbjct: 11 LGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGV-----RNPTLEVLYILATGLHTD 65

Query: 69 ICQLLDLPFS 78
          +  L      
Sbjct: 66 LTTLFVFRDP 75


>gi|114798978|ref|YP_761236.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114739152|gb|ABI77277.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 69

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +K  + + ++ E    +    A +AGL  T  +  +R            E + K L
Sbjct: 1  MDIRQKFGKRLRQLREERGWSQEEFADRAGLHRTYVSAVERGVRNPTLSV--LERLAKAL 58

Query: 63 A 63
           
Sbjct: 59 D 59


>gi|322688843|ref|YP_004208577.1| hypothetical protein BLIF_0656 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460179|dbj|BAJ70799.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 161

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES------IFKIL 62
           I + I  + E   LT S  A +  +   + ++ ++   E         S      + +++
Sbjct: 3   IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMARLM 62

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
              +   CQ   +PF        +        +             +   +
Sbjct: 63  EMPDNGFCQSCAMPFYCPEDHGTEPDGTRNGDYCNYCYEDGVFLQDYANSD 113


>gi|167038623|ref|YP_001666201.1| XRE family transcriptional regulator [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320117014|ref|YP_004187173.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166857457|gb|ABY95865.1| transcriptional regulator, XRE family [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319930105|gb|ADV80790.1| helix-turn-helix domain protein [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 129

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  +    NLT   LAR   L P++    +        R+P  E++ KI    N +
Sbjct: 2  LKDRLKTLRNEKNLTQRELARLLNLSPSTIAMYETGQ-----RFPDPETLKKIADFFNVS 56


>gi|331082825|ref|ZP_08331947.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330400154|gb|EGG79803.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 91

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I+ + ++H L+    A    +   + +  +         +P  E I KI      
Sbjct: 2  NIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKS-----YPDLEMIIKISDYFKI 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          ++ +LL          + ++K    +
Sbjct: 57 SVDELLRNDVQSEEKIDNEKKVKRDI 82


>gi|320007854|gb|ADW02704.1| transcriptional regulator, XRE family [Streptomyces flavogriseus
          ATCC 33331]
          Length = 509

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T S LA       ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQSQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|327193279|gb|EGE60185.1| putative transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 220

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +   H L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 42  DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 96

Query: 68  TICQLLDLPFSDGRTTE 84
            + +         +   
Sbjct: 97  GLAEFFAFEPERPKKAF 113


>gi|325282199|ref|YP_004254741.1| helix-turn-helix domain-containing protein [Odoribacter
          splanchnicus DSM 20712]
 gi|324314008|gb|ADY34561.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM
          20712]
          Length = 151

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I +AID+      L+ S L R+ G+     N+              T  + K+  A +  
Sbjct: 10 IGQAIDKRRNELGLSKSELGRRIGVPQQHINRILERET------METSKLAKVSQALDYN 63

Query: 69 ICQLLDLPFSD 79
             L       
Sbjct: 64 FFALFCSMSHQ 74


>gi|288560837|ref|YP_003424323.1| signal peptidase I [Methanobrevibacter ruminantium M1]
 gi|288543547|gb|ADC47431.1| signal peptidase I [Methanobrevibacter ruminantium M1]
          Length = 242

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
               T+  SMLP  + GD +++N +  ++ G+ +         + K +    G S+ L+S
Sbjct: 145 VIFTTEGDSMLPTIKSGDKVLVNKSHNIHVGNLVSANSSEYGPICKRVADIDGDSVYLVS 204

Query: 198 LNCC 201
            N  
Sbjct: 205 DNKK 208


>gi|190894990|ref|YP_001985283.1| putative transcriptional regulator [Rhizobium etli CIAT 652]
 gi|190700651|gb|ACE94733.1| putative transcriptional regulator protein [Rhizobium etli CIAT
          652]
          Length = 203

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +   H L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 25 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 79

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         +   
Sbjct: 80 GLAEFFAFEPERPKKAF 96


>gi|94968442|ref|YP_590490.1| XRE family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550492|gb|ABF40416.1| transcriptional regulator, XRE family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 179

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S  +I ++I  + +R  L+   LA +  +  T  +K +           S E + K L  
Sbjct: 63  SQLQIAQSIRNLRQRAGLSQRQLALRMQVPRTYVSKIENEKATPTLS--SLERLAKALQV 120

Query: 65  T 65
           T
Sbjct: 121 T 121


>gi|90417214|ref|ZP_01225141.1| hypothetical protein GB2207_05804 [marine gamma proteobacterium
          HTCC2207]
 gi|90330990|gb|EAS46251.1| hypothetical protein GB2207_05804 [marine gamma proteobacterium
          HTCC2207]
          Length = 121

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 1/93 (1%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +  I   + ++ +  +++ + L+R  G+   + N+     +    R  S E +      T
Sbjct: 2  NNTISMRLSKLMKERDISQNALSRATGVAQPTINRIL-CEVTLNPRHDSMERLANFFDVT 60

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
            ++ +               E    +     S
Sbjct: 61 PGSMYRSPSKEAFFSNEASLDELCENIERLSAS 93


>gi|331270556|ref|YP_004397048.1| putative transcriptional regulator, lacI/xre family [Clostridium
           botulinum BKT015925]
 gi|329127106|gb|AEB77051.1| Predicted transcriptional regulator, lacI/xre family [Clostridium
           botulinum BKT015925]
          Length = 221

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 58/213 (27%), Gaps = 5/213 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---WPSTESIFKILAA 64
           +I   I     + N+T   LA+K G+      + +              S      +   
Sbjct: 3   RIGSKIKEARLKSNMTEKQLAKKIGVSEKFIKEVESGKKVINESVMGKISKVLGKDLNDV 62

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           T     ++ +         +  EK   +                +          +P I 
Sbjct: 63  TMSFETEVYEEEKVQNTNKKTVEKINDVWNDALGSVLKPVPVYGYDMARIIEMRKLPIIG 122

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           +   G +A           D  +     KGD+       ++       +    G+   + 
Sbjct: 123 NRVEG-HAKDKVLFLKVEDDDMIGSRIAKGDVAFGYITHEIENNALC-LVEYKGERHIRQ 180

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +       + L+S       +TV + DI  + R
Sbjct: 181 IKRLDSNKLLLISNGNSLRTETVTVRDIRVLVR 213


>gi|322373236|ref|ZP_08047772.1| putative transcriptional regulator [Streptococcus sp. C150]
 gi|321278278|gb|EFX55347.1| putative transcriptional regulator [Streptococcus sp. C150]
          Length = 69

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          ++   +  +  R  L  S LA+ AG+   S +  +R     
Sbjct: 2  RLKNRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTP 42


>gi|32141280|ref|NP_733681.1| UDP-N-acetylglucosamine transferase [Streptomyces coelicolor
          A3(2)]
 gi|256784482|ref|ZP_05522913.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24]
 gi|289768363|ref|ZP_06527741.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24]
 gi|24429550|emb|CAD55243.1| putative UDP-N-acetylglucosamine transferase [Streptomyces
          coelicolor A3(2)]
 gi|289698562|gb|EFD65991.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24]
          Length = 509

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   I    +    T S LA       ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGRLIRDARQHRGWTQSQLAEALNTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|332361662|gb|EGJ39466.1| transcriptional regulator [Streptococcus sanguinis SK1056]
          Length = 69

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 2  KLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYT-----PSIVIALKIAHIFNE 56

Query: 68 T 68
           
Sbjct: 57 N 57


>gi|296453887|ref|YP_003661030.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183318|gb|ADH00200.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 161

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES------IFKIL 62
           I + I  + E   LT S  A +  +   + ++ ++   E         S      + K++
Sbjct: 3   IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAKLM 62

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
              +   CQ   +PF        +        +             +   +
Sbjct: 63  EMPDNGFCQSCAMPFYRPEDHGTEPDGTRNGDYCNYCYDDGVFLQDYANSD 113


>gi|196033431|ref|ZP_03100843.1| DNA-binding protein [Bacillus cereus W]
 gi|229196038|ref|ZP_04322790.1| Transcriptional regulator, MerR [Bacillus cereus m1293]
 gi|195993865|gb|EDX57821.1| DNA-binding protein [Bacillus cereus W]
 gi|228587420|gb|EEK45486.1| Transcriptional regulator, MerR [Bacillus cereus m1293]
          Length = 181

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + K++K I         S  F  +           + VP   +  
Sbjct: 63  SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
             +   + ++       
Sbjct: 117 ENVLEHKGEELAFVLDG 133


>gi|206970891|ref|ZP_03231843.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|229189930|ref|ZP_04316940.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
 gi|206734527|gb|EDZ51697.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|228593604|gb|EEK51413.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
          Length = 181

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + K++K I         S  F  +           + VP   +  
Sbjct: 63  SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
             +   + ++       
Sbjct: 117 ENVLEHKGEELAFVLDG 133


>gi|30019868|ref|NP_831499.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579]
 gi|229043585|ref|ZP_04191294.1| Transcriptional regulator, MerR [Bacillus cereus AH676]
 gi|229127155|ref|ZP_04256152.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4]
 gi|29895413|gb|AAP08700.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579]
 gi|228656271|gb|EEL12112.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4]
 gi|228725807|gb|EEL77055.1| Transcriptional regulator, MerR [Bacillus cereus AH676]
          Length = 181

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + K++K I         S  F  +           + VP   +  
Sbjct: 63  SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
             +   + ++       
Sbjct: 117 ENVLEHKGEELAFVLDG 133


>gi|75763251|ref|ZP_00743006.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218896766|ref|YP_002445177.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228900413|ref|ZP_04064641.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|228938947|ref|ZP_04101547.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228952211|ref|ZP_04114302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228958114|ref|ZP_04119849.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228969645|ref|ZP_04130433.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971829|ref|ZP_04132450.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978437|ref|ZP_04138814.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
 gi|229069382|ref|ZP_04202672.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
 gi|229079014|ref|ZP_04211566.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|229109288|ref|ZP_04238887.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15]
 gi|229144444|ref|ZP_04272849.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24]
 gi|229178237|ref|ZP_04305608.1| Transcriptional regulator, MerR [Bacillus cereus 172560W]
 gi|296502428|ref|YP_003664128.1| MerR family transcriptional regulator [Bacillus thuringiensis
           BMB171]
 gi|74489263|gb|EAO52724.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218543988|gb|ACK96382.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228605367|gb|EEK62817.1| Transcriptional regulator, MerR [Bacillus cereus 172560W]
 gi|228639075|gb|EEK95500.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24]
 gi|228674298|gb|EEL29543.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15]
 gi|228704428|gb|EEL56862.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|228713869|gb|EEL65754.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
 gi|228781454|gb|EEM29655.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
 gi|228787919|gb|EEM35877.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228790054|gb|EEM37848.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228801631|gb|EEM48513.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807482|gb|EEM54010.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228820796|gb|EEM66821.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228859211|gb|EEN03643.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|296323480|gb|ADH06408.1| MerR family transcriptional regulator [Bacillus thuringiensis
           BMB171]
 gi|326939449|gb|AEA15345.1| MerR family transcriptional regulator [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 181

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + K++K I         S  F  +           + VP   +  
Sbjct: 63  SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
             +   + ++       
Sbjct: 117 ENVLEHKGEELAFVLDG 133


>gi|323691518|ref|ZP_08105787.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum
          WAL-14673]
 gi|323504412|gb|EGB20205.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum
          WAL-14673]
          Length = 136

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I    +   +T   LA K G+   + +K +R  +     +P   S+ K+      ++ QL
Sbjct: 10 IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLL-----YPDVNSLPKLAGIFGISVDQL 64

Query: 73 LDLPFSDGRTTEKKEKEIPLLYF 95
          + +  +DG   ++      +   
Sbjct: 65 MQIKTNDGPVNDRPVANRIIPIV 87


>gi|332654251|ref|ZP_08419995.1| putative transcriptional regulator [Ruminococcaceae bacterium
          D16]
 gi|332517337|gb|EGJ46942.1| putative transcriptional regulator [Ruminococcaceae bacterium
          D16]
          Length = 230

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E I    ++  L+   L  K G+   + +K +          P    + ++      
Sbjct: 2  ELKERIALARKQAGLSQEQLGEKLGVSRQAVSKWESGQNN-----PDVAYLAEMCRLFGV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          +   LL    ++  +   +  +   +
Sbjct: 57 SSDWLLLGKETEQASAPARCPDCQTI 82


>gi|317055082|ref|YP_004103549.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315447351|gb|ADU20915.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 165

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   + ++     L+   LA   G+   S ++ +          P    I ++      
Sbjct: 5  KIGAFLKQLRNEKGLSQEKLAEVFGVSSRSVSRWENGRT-----MPDISIIIELADYYGI 59

Query: 68 TICQ 71
           I +
Sbjct: 60 DIRE 63


>gi|256377491|ref|YP_003101151.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921794|gb|ACU37305.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
           43827]
          Length = 192

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 5/133 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +      T + LA   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 8   QVGERLRALRASRGATLADLAEVTGISKSTLSRLESGQ-----RRPSLELLLPIARAHRV 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L+  P                +   P                       P     +
Sbjct: 63  PLDELVGAPPVGDPRVRLAPVRRNGMTVVPLTQQPGGIQAYKMLIPYRGDDPDPRTHGGY 122

Query: 128 NGIYAIQTQDTRH 140
             +Y +  +    
Sbjct: 123 EWLYVLAGRLRLV 135


>gi|119967867|ref|YP_950697.1| putative cI-like repressor [Staphylococcus phage PH15]
 gi|112790031|gb|ABI21751.1| putative cI-like repressor [Staphylococcus phage PH15]
 gi|329736005|gb|EGG72280.1| putative HTH-type transcriptional regulator AnsR [Staphylococcus
          epidermidis VCU045]
          Length = 107

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +  +I + I ++ + +N+  +  A K G++ ++ ++ +       +R    E I +I 
Sbjct: 1  MRTSAEIGKLIKQLRKENNINLTDFATKIGVNKSTLSRYENG-----SRKIPMEDIAEIA 55

Query: 63 AATNETI 69
           A N T 
Sbjct: 56 NALNVTP 62


>gi|148545826|ref|YP_001265928.1| hypothetical protein Pput_0576 [Pseudomonas putida F1]
 gi|148509884|gb|ABQ76744.1| transcriptional regulator [Pseudomonas putida F1]
          Length = 233

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 61/231 (26%), Gaps = 28/231 (12%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKS-KRFGIEGR-----------NRWPSTES 57
            + +  + +   LTPS  A +  +     N   KR     R            RW  T  
Sbjct: 5   GDRLRALLQECGLTPSDFAAQRSVTAQHVNNWFKRGVPLARLDELADLFCVHRRWLRTGE 64

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             K                      +  + + + + Y+  S            +      
Sbjct: 65  GPKHPNPLLRNGLPRPVPANPLTPLSGHRGRLLKVPYYEVSNG--------LLSPVSSKH 116

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
           + +P       G+ A            ++MLPL      L ++  +            + 
Sbjct: 117 LRLPAKALKGLGVQA--GNAICLAMPASNMLPLIPLEATLAIDLGMTQVVEGETYALLQN 174

Query: 178 GDIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222
           G +    L      ++ L S     Y V+    +      +E +  +   S
Sbjct: 175 GMLRVNNLSLGPHDTLYLHSHDRRNYTVERYTAAQRQAQGLEILGWVFHWS 225


>gi|71898886|ref|ZP_00681053.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
 gi|71731298|gb|EAO33362.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
          Length = 126

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S + + + + + R+ E   L+   LA  +G+   S N    +G    ++ P   +I K
Sbjct: 1  MNSLAIRAVADNVRRLLEARRLSQKELAALSGVSQKSINDLLNYGGT-VSKEPRLGTIEK 59

Query: 61 ILAATNETICQ 71
          +         Q
Sbjct: 60 LAKGFGIATWQ 70


>gi|218507568|ref|ZP_03505446.1| putative transcriptional regulator protein [Rhizobium etli Brasil
          5]
          Length = 167

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +   H L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         +   
Sbjct: 59 GLAEFFAFEPERPKKAF 75


>gi|172040064|ref|YP_001799778.1| HTH family transcriptional regulator [Corynebacterium urealyticum
          DSM 7109]
 gi|171851368|emb|CAQ04344.1| putative transcriptional regulator (HTH_3 family)
          [Corynebacterium urealyticum DSM 7109]
          Length = 115

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++  AI+       L+   LA + GL  ++ ++  +       R      + +I  AT  
Sbjct: 9  EMISAIESALSSAGLSQRDLAARTGLSQSTVHRILKGE-----RNVKMPELIRIADATGC 63

Query: 68 TICQ 71
          T+ Q
Sbjct: 64 TVAQ 67


>gi|119505191|ref|ZP_01627266.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [marine gamma proteobacterium HTCC2080]
 gi|119458882|gb|EAW39982.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [marine gamma proteobacterium HTCC2080]
          Length = 70

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          HK +   ++++ +    T   L+  AG+   S N  +          PST    KI    
Sbjct: 5  HKNLLNNLEQLRKAAGFTQQQLSDSAGVSRKSINAIENGIYV-----PSTVLALKISQTL 59

Query: 66 NETICQLLD 74
            T+  L  
Sbjct: 60 KCTVDDLFQ 68


>gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM
          2379]
 gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM
          2379]
          Length = 107

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 3  SFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            + ++ +   I  + +R  +T   LA   G+D    ++ +         +PS + + KI
Sbjct: 1  MRTANELLGLRIRELRKRAGMTQEQLAELLGIDQKHMSRIELGKS-----YPSLDRLLKI 55

Query: 62 L 62
           
Sbjct: 56 A 56


>gi|333009490|gb|EGK28944.1| repressor protein C2 domain protein [Shigella flexneri VA-6]
          Length = 77

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 156 ILILNSAIQVNCGDRLLI-KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIE 213
           ++ ++  +    GD ++     TG+   K LI    +   L +LN  +P   ++++ +  
Sbjct: 1   MIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRY-LKALNPNWPEPYIKINGNCS 59

Query: 214 WIARIL 219
            I  ++
Sbjct: 60  IIGTVI 65


>gi|301053367|ref|YP_003791578.1| MerR family transcriptional regulator [Bacillus anthracis CI]
 gi|300375536|gb|ADK04440.1| transcriptional regulator, MerR family [Bacillus cereus biovar
          anthracis str. CI]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|291548676|emb|CBL24938.1| Helix-turn-helix [Ruminococcus torques L2-14]
          Length = 129

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          I E I    +   ++   LA K G    TS NK +    E   R    + I   L  T  
Sbjct: 3  IGERIKARRDELGMSQEELAHKIGYKSKTSINKIELGIQE--LRQSKIKQIADALQTTPA 60

Query: 68 TICQLLDLPFSDGRTTEKK 86
           I    +          ++
Sbjct: 61 YIMGWKETEEDQQLKKCRE 79


>gi|228907521|ref|ZP_04071378.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
 gi|228852013|gb|EEM96810.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|228914405|ref|ZP_04078019.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228845250|gb|EEM90287.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|228933114|ref|ZP_04095975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228826555|gb|EEM72328.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|229155408|ref|ZP_04283518.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342]
 gi|228628123|gb|EEK84840.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|196044996|ref|ZP_03112229.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225863689|ref|YP_002749067.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|229184021|ref|ZP_04311235.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1]
 gi|196023998|gb|EDX62672.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225789365|gb|ACO29582.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|228599460|gb|EEK57066.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|218902948|ref|YP_002450782.1| DNA-binding protein [Bacillus cereus AH820]
 gi|228926864|ref|ZP_04089931.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229121381|ref|ZP_04250611.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201]
 gi|218538383|gb|ACK90781.1| DNA-binding protein [Bacillus cereus AH820]
 gi|228662070|gb|EEL17680.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201]
 gi|228832805|gb|EEM78375.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|164605267|dbj|BAF98445.1| putative phage repressor [Sphingopyxis macrogoltabida]
          Length = 182

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKV 184
               +               +M P  + GD +I+      +   D L     + +   + 
Sbjct: 79  WLRRLCNRPAGLAILPIAGEAMQPTLQNGDEVIIQRLRSHDALQDGLYAVRGSSETFVRR 138

Query: 185 LISRR-GRSIDLMSLNCCYPVDT-VEMSDIEWIARILWA-SQ 223
           +        I +++ +  YP    V+   I  + R++W  SQ
Sbjct: 139 IALDPTKNRISVLTDHPAYPSWNGVQRKAINVVGRVIWIGSQ 180


>gi|49477369|ref|YP_035961.1| MerR family transcriptional regulator [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|49328925|gb|AAT59571.1| transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar konkukian str. 97-27]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|52143637|ref|YP_083193.1| MerR family transcriptional regulator [Bacillus cereus E33L]
 gi|196039098|ref|ZP_03106405.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|51977106|gb|AAU18656.1| transcriptional regulator, MerR family [Bacillus cereus E33L]
 gi|196030243|gb|EDX68843.1| DNA-binding protein [Bacillus cereus NVH0597-99]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|42780924|ref|NP_978171.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206974833|ref|ZP_03235748.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217959313|ref|YP_002337861.1| DNA-binding protein [Bacillus cereus AH187]
 gi|222095451|ref|YP_002529511.1| DNA-binding protein [Bacillus cereus Q1]
 gi|229090798|ref|ZP_04222029.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42]
 gi|229138526|ref|ZP_04267113.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
 gi|42736845|gb|AAS40779.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206746852|gb|EDZ58244.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217066610|gb|ACJ80860.1| DNA-binding protein [Bacillus cereus AH187]
 gi|221239509|gb|ACM12219.1| DNA-binding protein [Bacillus cereus Q1]
 gi|228644934|gb|EEL01179.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
 gi|228692549|gb|EEL46277.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42]
 gi|324325844|gb|ADY21104.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|83594740|ref|YP_428492.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC
          11170]
 gi|83577654|gb|ABC24205.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC
          11170]
          Length = 97

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++  A+     R  L+ + LA + G   ++  + +     G   WPS  ++ ++ AAT 
Sbjct: 29 ELATALIAARARAGLSQAELAERMGTTQSAIARLE-----GGRHWPSRRTLERLAAATG 82


>gi|325830940|ref|ZP_08164293.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1]
 gi|325487102|gb|EGC89547.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1]
          Length = 77

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + +   L+  G A + G+ PT     +R       R  S +++ +I      T  +
Sbjct: 17 RIKDLRDERGLSQRGFAARIGMSPTYLADVERGA-----RNVSIDNMKRIADGFGVTFHE 71

Query: 72 LLDLPF 77
          + +   
Sbjct: 72 MTEGME 77


>gi|86158311|ref|YP_465096.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774822|gb|ABC81659.1| transcriptional regulator, XRE family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 136

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +  A+  M E   LT + LA   G    S  + ++   +   RW   E++ KI  A  +
Sbjct: 45  DVAIAVRSMRENAGLTQAQLAEIVGTSQPSIARMEKGLDQRTPRW---ETLHKIARALGK 101

Query: 68  T 68
            
Sbjct: 102 N 102


>gi|84496251|ref|ZP_00995105.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp.
          HTCC2649]
 gi|84383019|gb|EAP98900.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp.
          HTCC2649]
          Length = 511

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I        LT + LA K G   ++  + ++          S E + ++      
Sbjct: 9  RIGTLIRDARRHQGLTQNELADKLGTSQSAVARIEQGRQN-----LSLEMLARVGETLGS 63

Query: 68 TI 69
            
Sbjct: 64 EF 65


>gi|99082024|ref|YP_614178.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038304|gb|ABF64916.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040]
          Length = 289

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 4/113 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +  + ++R      L+ S LAR  G+D ++ ++      +   R P+   I     A   
Sbjct: 13  QFRDRLERALRDSGLSQSALARATGVDRSTISQLL---TDDGARLPNAHVIGACAEALGV 69

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119
           +   LL L        E     I +   P +              G K   V 
Sbjct: 70  SADWLLSLSERPESAAELLASSIAMTEAPRALVDERIYEWHREAAGYKIRHVP 122


>gi|291521725|emb|CBK80018.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 129

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I    ++  L+   LA  A L     +  +        R PS ES+ KI  A   T
Sbjct: 8  IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENA-----KRKPSLESLIKISNALEIT 62

Query: 69 ICQLLDLPFSDGRTTE 84
          I +LL        T  
Sbjct: 63 IDELLYGNLLYNPTEY 78


>gi|148266749|ref|YP_001245692.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus JH9]
 gi|150392790|ref|YP_001315465.1| hypothetical protein SaurJH1_0316 [Staphylococcus aureus subsp.
          aureus JH1]
 gi|258419674|ref|ZP_05682641.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|258448642|ref|ZP_05696755.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|269203649|ref|YP_003282918.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282925315|ref|ZP_06332972.1| XRE family transcriptional regulator [Staphylococcus aureus
          A9765]
 gi|283771021|ref|ZP_06343912.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus H19]
 gi|284024165|ref|ZP_06378563.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus 132]
 gi|295407180|ref|ZP_06816981.1| XRE family transcriptional regulator [Staphylococcus aureus
          A8819]
 gi|297245933|ref|ZP_06929792.1| XRE family transcriptional regulator [Staphylococcus aureus
          A8796]
 gi|147739818|gb|ABQ48116.1| transcriptional regulator, XRE family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149945242|gb|ABR51178.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
          aureus JH1]
 gi|257844259|gb|EEV68641.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|257858273|gb|EEV81161.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|262075939|gb|ACY11912.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282592591|gb|EFB97601.1| XRE family transcriptional regulator [Staphylococcus aureus
          A9765]
 gi|283459615|gb|EFC06706.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus H19]
 gi|294968033|gb|EFG44061.1| XRE family transcriptional regulator [Staphylococcus aureus
          A8819]
 gi|297177097|gb|EFH36351.1| XRE family transcriptional regulator [Staphylococcus aureus
          A8796]
 gi|315130281|gb|EFT86268.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
          aureus CGS03]
          Length = 107

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +  +I + I ++ + +N+  +  A K G++ ++ ++ +       +R    E I +I 
Sbjct: 1  MRTSAEIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENG-----SRKIPMEDIAEIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89
           A   T   LL          + +   
Sbjct: 56 NALKVTPEYLLLKNRQTENEVQHRAAH 82


>gi|53721509|ref|YP_110494.1| MerR family transcriptional regulator [Burkholderia pseudomallei
          K96243]
 gi|126443308|ref|YP_001061732.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          668]
 gi|126457392|ref|YP_001074677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1106a]
 gi|134282910|ref|ZP_01769612.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          305]
 gi|167921777|ref|ZP_02508868.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          BCC215]
 gi|226196538|ref|ZP_03792119.1| transcriptional regulator PuuR [Burkholderia pseudomallei
          Pakistan 9]
 gi|237509401|ref|ZP_04522116.1| transcriptional regulator PuuR [Burkholderia pseudomallei
          MSHR346]
 gi|242312333|ref|ZP_04811350.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b]
 gi|254198938|ref|ZP_04905356.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          S13]
 gi|254265312|ref|ZP_04956177.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1710a]
 gi|254296722|ref|ZP_04964176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          406e]
 gi|52211923|emb|CAH37928.1| putative MerR-family transcriptional regulator [Burkholderia
          pseudomallei K96243]
 gi|126222799|gb|ABN86304.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          668]
 gi|126231160|gb|ABN94573.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106a]
 gi|134245558|gb|EBA45650.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          305]
 gi|157806591|gb|EDO83761.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          406e]
 gi|169657110|gb|EDS88504.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          S13]
 gi|225931414|gb|EEH27420.1| transcriptional regulator PuuR [Burkholderia pseudomallei
          Pakistan 9]
 gi|235001606|gb|EEP51030.1| transcriptional regulator PuuR [Burkholderia pseudomallei
          MSHR346]
 gi|242135572|gb|EES21975.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b]
 gi|254216314|gb|EET05699.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1710a]
          Length = 183

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   +  +  ++ L+   LA++AG+   + +  ++  +      PS  S+ K+L    
Sbjct: 3  NEVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIP 57

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
           ++ +       + R+   +  E+P L
Sbjct: 58 MSLAEFFTFEIDENRSVVSRRGEMPNL 84


>gi|82702660|ref|YP_412226.1| XRE family transcriptional regulator [Nitrosospira multiformis
          ATCC 25196]
 gi|82410725|gb|ABB74834.1| transcriptional regulator, XRE family [Nitrosospira multiformis
          ATCC 25196]
          Length = 189

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 5/87 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I    E+  L  S LA   G+ P +  + +    +     P  + + KI      
Sbjct: 7  DIARIIREGREKLKLNQSELAELVGVSPQAVQQWESGATQ-----PRGKRLNKIAEVLKL 61

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLY 94
              +      +               
Sbjct: 62 PPAMMHFGMSLEVPAAPDAAVSRQPEN 88


>gi|76817873|ref|YP_337176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1710b]
 gi|217424647|ref|ZP_03456145.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576]
 gi|254185399|ref|ZP_04891987.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1655]
 gi|254187284|ref|ZP_04893798.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|76582346|gb|ABA51820.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1710b]
 gi|157934966|gb|EDO90636.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|184209634|gb|EDU06677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1655]
 gi|217392571|gb|EEC32595.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576]
          Length = 189

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   +  +  ++ L+   LA++AG+   + +  ++  +      PS  S+ K+L    
Sbjct: 9  NEVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIP 63

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
           ++ +       + R+   +  E+P L
Sbjct: 64 MSLAEFFTFEIDENRSVVSRRGEMPNL 90


>gi|295100273|emb|CBK97818.1| Predicted transcriptional regulator with C-terminal CBS domains
           [Faecalibacterium prausnitzii L2-6]
          Length = 184

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 6/112 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + +    E   ++   LA K G    +S NK +        R  +   I  I  A   
Sbjct: 3   IGQRVKIRREELGMSQEELATKVGYKSKSSINKIELGF-----RVLTQSKIKVIADALET 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           T   ++       +     +    ++    +       +           + 
Sbjct: 58  TPSYIMGWDEESHQNEWSSKFRDSVMQILNNADPADLKAAGISVQEIEEELD 109


>gi|167767646|ref|ZP_02439699.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1]
 gi|167710663|gb|EDS21242.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1]
 gi|291560781|emb|CBL39581.1| Predicted transcriptional regulators [butyrate-producing bacterium
           SSC/2]
          Length = 204

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 6/148 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I  + +   ++   LA K G+   + +K +          P  E I  +      T  
Sbjct: 5   DRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQST-----PDLEKIIIMSDFFGVTTD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            +L          +K ++    + +  S +           GN +    +  +       
Sbjct: 60  YILKGIEPVADKEQKNKELTSKVLYISSTAFVAIGLFC-AFGNWYAEQTMEAVWGSMIIQ 118

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILI 158
                     +       P Y     +I
Sbjct: 119 AIGIVGYFIARILSEEKSPFYVNWLNII 146


>gi|83589108|ref|YP_429117.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572022|gb|ABC18574.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 115

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +  E++  + +R  L    +AR  G++  +    +R   +     P  E++ ++      
Sbjct: 3  RFGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQ-----PGLETLVRLSRLFGV 57

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          ++ +L+ +  +         + 
Sbjct: 58 SLDELVGVERAATPLPLASYRS 79


>gi|326563163|gb|EGE13432.1| putative prophage repressor [Moraxella catarrhalis 103P14B1]
 gi|326568826|gb|EGE18896.1| putative prophage repressor [Moraxella catarrhalis BC8]
          Length = 191

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 58/214 (27%), Gaps = 46/214 (21%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    ++    PS +A    +   +  K K+          S +++  ++        
Sbjct: 6   ERLQFAIKQAGSNPSKVAEAVNVTAQATQKWKKG-------QISVDTLTNVIKEIGVDAN 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            LL    ++         +   +    + S     +     G+ W               
Sbjct: 59  WLLLGEQANQNQV---NNQHGYIGGSVNQSVVNNYASQLTGGDDW--------------- 100

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                        +  M P +  GD + ++   +   G+ + +         K+L   R 
Sbjct: 101 ---------LTIINNDMFPAFAIGDCVRIDVKQEAQAGNYVYVDCEGK----KMLRKYRP 147

Query: 191 RSI--------DLMSLNCCYPVDTVEMSDIEWIA 216
           +           L++ N  YPV          + 
Sbjct: 148 KGYDENGTPYTHLVAENEDYPVIDSRHQAFTVLG 181


>gi|326201089|ref|ZP_08190961.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325988657|gb|EGD49481.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 230

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 63/229 (27%), Gaps = 24/229 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I+++  +   TP  LA+  G+  +     +               I K L     
Sbjct: 3   RIGQEINKVRLKKGKTPKQLAKALGVSESFVLDIESGKKIVS--DDMIGRISKALDFELG 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG---VPEIR 124
            I            T  K            + +           GN   TV        +
Sbjct: 61  PIGLFASDDKFAPSTGNKDSVRPVKKVASVATNEPVQQVWDDAFGNILKTVPVYGYKMDK 120

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI--LILNSAIQVN-------CGDRLLIKP 175
                +  I+        ++          D+    +    +           D + +  
Sbjct: 121 IIDKKLLPIEKNKVEGYAKEKVFYLNIEDTDMAGFRIFKGDRAFGVLENQIDKDGIFLIE 180

Query: 176 RTGDIVAKVLISRRGRSIDLMSLNCCYP-----VDTVEMSDIEWIARIL 219
             G+   + +   +G  + L+     Y       +TV   +I+ +AR++
Sbjct: 181 YNGERAVRQVKKLQGDKLLLV-----YNRGTLITETVSTKEIKIVARLV 224


>gi|261369061|ref|ZP_05981944.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|282568797|gb|EFB74332.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
          Length = 90

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + +  + E    +   +A+  G   +S N+ +          PS E   +     + 
Sbjct: 3  EVGKRLKALRESIGFSQVKMAQALGTTQSSINRYENGQS-----SPSVELFRRYADYFDV 57

Query: 68 TICQLLDLPFSDGRTTEK 85
          ++  +          T  
Sbjct: 58 SLDYIFARTDKPQGETYH 75


>gi|262280440|ref|ZP_06058224.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258218|gb|EEY76952.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 182

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 73/192 (38%), Gaps = 17/192 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + ++R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N
Sbjct: 6   EIIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L++ P +  +     +            +            + +  +  P     
Sbjct: 61  IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPSE-DR 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +  + + + +     +  +++         +++ A++++ GD   I            +
Sbjct: 120 LSEPHPVGSVEHIIVVEGKALVG--------LIDEAVELSVGD--YICYPADQKHIFRAL 169

Query: 187 SRRGRSIDLMSL 198
            +  +++ L+S 
Sbjct: 170 EKGTKAL-LISE 180


>gi|169832243|ref|YP_001718225.1| helix-turn-helix domain-containing protein [Candidatus
          Desulforudis audaxviator MP104C]
 gi|169639087|gb|ACA60593.1| helix-turn-helix domain protein [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 95

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + + +  E    T S LA K  +   + ++ ++       R+P  E++ ++      ++ 
Sbjct: 4  DRLRKAREARGWTQSQLAAKLNVSDATISRYEKG-----LRYPDIETLKRLALVLETSVD 58

Query: 71 QLLDLPFSDGRTTEKKEKEI 90
           L+     D       E   
Sbjct: 59 YLVGEKPDDPDEKLPPEARR 78


>gi|315037973|ref|YP_004031541.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus
           GRL 1112]
 gi|312276106|gb|ADQ58746.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus
           GRL 1112]
          Length = 147

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 25/100 (25%), Gaps = 5/100 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I ++     +T + LA   G+        +        R P  E+  K+      ++
Sbjct: 1   MNRIRQVRSEKGITQAELANAIGMSRQGLAYYENNQ-----REPKLETWQKLADYLGVSV 55

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
             L     S      +         F    +    +    
Sbjct: 56  PYLQGFSDSLANGASRNSNGFGFFNFSEEANEAKINDQSL 95


>gi|306825347|ref|ZP_07458687.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432285|gb|EFM35261.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 158

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 6/135 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  + + HNLT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2   IGENIKALRKTHNLTQPEFAKIVGISRNSLSRYENGIS-----SVSTELIDRICKKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               +          E  +  + +      G+        F                  +
Sbjct: 57  YID-IVGEEKMLTPVEDYQLTLKIEVIKERGANILAQLYRFQDEQGIAFDDTSNPWVLMS 115

Query: 129 GIYAIQTQDTRHKTQ 143
              +       +   
Sbjct: 116 DDLSDLINTRIYLVS 130


>gi|239982240|ref|ZP_04704764.1| putative signal peptidase [Streptomyces albus J1074]
          Length = 132

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLM 196
             +    SM+P    GD L++    +V  GD ++++       +V K  + RR     ++
Sbjct: 1   MVEVDGPSMVPTLEHGDWLLVRYGARVRPGDVVVLRHPFQQDLLVVKRAVERREGGWWVL 60

Query: 197 SLN 199
             N
Sbjct: 61  GDN 63


>gi|228969784|ref|ZP_04130548.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228789936|gb|EEM37754.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 90

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + ++  LT   LA +  L        +R       R  S  ++ KI      +
Sbjct: 2  VGENIRILRKKRGLTQEELAERINLQQAYIGGIERGE-----RNISMLTLQKIAVGLEIS 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93
            ++ +    +     ++E+ + ++
Sbjct: 57 PDKIFNFSNINSLENPQQEEFLSII 81


>gi|146296435|ref|YP_001180206.1| XRE family transcriptional regulator [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145410011|gb|ABP67015.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 103

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I  + ++   +   LA +AG+  ++ +  +R   +     P+ E++  I  A N 
Sbjct: 2  EVGKKIKELRKQKKWSQEKLAAEAGISQSALSAIERGIKQ-----PTVETLNNICNALNI 56

Query: 68 TICQLLDLPFSDGRTT 83
          T+        ++    
Sbjct: 57 TLVDFFSEEKTELSPA 72


>gi|186685408|ref|YP_001868604.1| XRE family transcriptional regulator [Nostoc punctiforme PCC
          73102]
 gi|186467860|gb|ACC83661.1| putative transcriptional regulator, XRE family [Nostoc
          punctiforme PCC 73102]
          Length = 87

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++  +A+ R     +L+   LA +A L  T  +  +R  +      PS E++ K+  A N
Sbjct: 11 QRFGKAVRRRRRELDLSQEQLAERAELHRTYISNLERGELN-----PSLETMEKLANALN 65

Query: 67 ETICQLLDLPFSDGRTTEKK 86
           +I  +            +K
Sbjct: 66 ISIPAMFINYGIQVENEPRK 85


>gi|322385844|ref|ZP_08059487.1| XRE family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
 gi|321270129|gb|EFX53046.1| XRE family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
          Length = 68

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   +  +  R  L  + LA+KAG+   + +  +R         PS     KI    NE
Sbjct: 2  KLKNRLKELRARDGLNQTDLAKKAGVSRQTISLLERDEYT-----PSVVIALKIAQIFNE 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|312794293|ref|YP_004027216.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181433|gb|ADQ41603.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 68

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             I  + +   L+    A+ AGL  +  ++ +          PS   I KI  A 
Sbjct: 4  GRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKT----NPSLSVIKKISKAL 55


>gi|311279673|ref|YP_003941904.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
           SCF1]
 gi|308748868|gb|ADO48620.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 191

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 14/148 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + +I   I    E  + + S LA +AG+  T  +K +R         P+   + ++  A 
Sbjct: 9   NARIGARIRIERESRSWSLSELADRAGVSRTMIHKIERGDS-----SPTATMLGRLSGAF 63

Query: 66  NETICQLLDLPFSDG--------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             ++  L+               +   +  +   L       S    D          + 
Sbjct: 64  GISMSTLIARAEMQEGKLLRFASQPVWRDPQSHYLRRHVSPRSDLPIDLVQVELPPGSD- 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
           + +P              Q      +  
Sbjct: 123 IPMPASSYALARQLIWLQQGELLFIEGD 150


>gi|260585081|ref|ZP_05852823.1| transcriptional regulator, Cro/CI family [Granulicatella elegans
          ATCC 700633]
 gi|260157277|gb|EEW92351.1| transcriptional regulator, Cro/CI family [Granulicatella elegans
          ATCC 700633]
          Length = 180

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   +  +  +  LT   LA +  L     ++ +          PS ++ F IL     
Sbjct: 2  EIGSHLKALRVQKGLTQEELAERTDLSKGYISQLENDLS-----SPSMDTFFDILEVLGC 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
                +    +  T    E    + 
Sbjct: 57 APKDFFEDGPEEALTVYGPEDMTVME 82


>gi|225377956|ref|ZP_03755177.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM
           16841]
 gi|225210207|gb|EEG92561.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM
           16841]
          Length = 339

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 49/190 (25%), Gaps = 22/190 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I   I  +     ++   +A K G+   + +K +  G       P    +  I +   
Sbjct: 2   KTIGNKIKELRRSKGMSQKDIADKLGVTSQAVSKWENDGS-----LPEMTMLPDIASLFG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I  L +        + +K+ +   +                   +  N          
Sbjct: 57  IQIDDLFEYSTEKRYESIEKKLQYGRVMTNMEFENEEAFLIREVEADPTNY--------- 107

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                ++      H+ +      +Y     + L+   +   GD   I         K   
Sbjct: 108 --HAISLLGDFYGHRAECMYQKSVYYAKRAIDLHPNQK---GD---INNINNGNHGKRFD 159

Query: 187 SRRGRSIDLM 196
                  +L+
Sbjct: 160 WDTANHQELI 169


>gi|257066745|ref|YP_003153001.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
           20548]
 gi|256798625|gb|ACV29280.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
           20548]
          Length = 491

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 52/181 (28%), Gaps = 18/181 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S +K+ + +    +   +T   LA   G++    ++ +          PS + +  
Sbjct: 1   MKKLSIEKLADTVINKRKEKGITQKSLADTTGINRAMISRLESCDYT-----PSIDQLQA 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    +  +  + +    +      K+ +I +      G                + V  
Sbjct: 56  IGEVLDFEVVDMFEEETYEKEIKSDKKYKIAVAGTGYVGMSIATLLSQHNEVTAVDIVEE 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRT 177
              +            +     QD  +     + D+ +   ++        D ++I   T
Sbjct: 116 KVEKI----------NNKISPIQDDYIEKYLEEKDLNLRATIDGEAAYKDADFVVIAAPT 165

Query: 178 G 178
            
Sbjct: 166 N 166


>gi|209546895|ref|YP_002278813.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209538139|gb|ACI58073.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 182

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +   H L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         R   
Sbjct: 59 GLAEFFAFEPERPRKAF 75


>gi|163738607|ref|ZP_02146021.1| transcriptional regulator, XRE family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161387935|gb|EDQ12290.1| transcriptional regulator, XRE family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 286

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 4/132 (3%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
                ++    ++R      L+ S LAR  G+D ++ ++      +   R P+   +   
Sbjct: 7   KRLRAEQFRLRLNRALRDSGLSQSALARAIGVDRSTISQLL---TDAGARLPNAHVVGAC 63

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             A   +   LL L        +     + +   P +                +    VP
Sbjct: 64  AGALGVSADWLLSLSDRPENAADLVAASLSMAKAPRALVDERIFEWHQEA-QGYKIRHVP 122

Query: 122 EIRSPHNGIYAI 133
                     A+
Sbjct: 123 AALPDMLKTRAL 134


>gi|163743006|ref|ZP_02150389.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10]
 gi|161383689|gb|EDQ08075.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10]
          Length = 287

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 4/132 (3%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
                ++    ++R      L+ S LAR  G+D ++ ++      +   R P+   +   
Sbjct: 7   KRLRAEQFRLRLNRALRDSGLSQSALARAIGVDRSTISQLL---TDAGARLPNAHVVGAC 63

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             A   +   LL L        +     + +   P +                +    VP
Sbjct: 64  AGALGVSADWLLSLSDRPENAADLVAASLSMAKAPRALVDERIFEWHQEA-QGYKIRHVP 122

Query: 122 EIRSPHNGIYAI 133
                     A+
Sbjct: 123 AALPDMLKTRAL 134


>gi|157692960|ref|YP_001487422.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032]
 gi|157681718|gb|ABV62862.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032]
          Length = 111

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I +       + S LA KAG+  +  +  +R         PS + + K+ A  + +
Sbjct: 2   IGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQT----NPSIQFLEKVSAVLDVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           +  LL          +   +   L+    +          F     W
Sbjct: 58  VHTLLHEKDETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQIW 104


>gi|15616111|ref|NP_244416.1| immunity repressor protein (phage-related protein) [Bacillus
           halodurans C-125]
 gi|10176173|dbj|BAB07268.1| immunity repressor protein (phage-related protein) [Bacillus
           halodurans C-125]
          Length = 154

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 4/109 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+    I  + ++   T + LA  +G+     ++ +          P  E+I K+  A  
Sbjct: 4   KQFGSFIRALRKKKGFTVNQLALYSGVSSAQISRIENGLRG----VPKPETIKKLSEALG 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                L+         T+     +                    TGN +
Sbjct: 60  HPYEDLMQAAGYIDDNTKTDLPALTERDERDIQKELEKIIKGLKTGNGF 108


>gi|311031854|ref|ZP_07709944.1| transcriptional regulator SinR [Bacillus sp. m3-13]
          Length = 110

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I +  E+  ++ S LA +AG+  +  +  +R         PS + + K+ +     
Sbjct: 2   IGERIKKYREQRKMSMSELAERAGVAKSYLSSIERNLQS----NPSVQFLEKVSSVLGVN 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           +  LL              +   L+       
Sbjct: 58  VNTLLHDEDEAQAKENLDREWATLVKEAMDSG 89


>gi|302869035|ref|YP_003837672.1| helix-turn-helix domain-containing protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315504494|ref|YP_004083381.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|302571894|gb|ADL48096.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
          27029]
 gi|315411113|gb|ADU09230.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 186

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          I  A+ R  ER  L+ + LAR+AG+  ++ ++ +          PS E+++ +
Sbjct: 12 IAAALRRERERAGLSLTELARRAGIAKSTLSQLESGSGN-----PSVETLWAL 59


>gi|229160788|ref|ZP_04288779.1| Transcriptional regulator, MerR [Bacillus cereus R309803]
 gi|228622636|gb|EEK79471.1| Transcriptional regulator, MerR [Bacillus cereus R309803]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LAR A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|30261830|ref|NP_844207.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47527071|ref|YP_018420.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184664|ref|YP_027916.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|165869280|ref|ZP_02213939.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167633298|ref|ZP_02391623.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167638844|ref|ZP_02397119.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170686265|ref|ZP_02877487.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170707323|ref|ZP_02897778.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177650592|ref|ZP_02933559.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190566460|ref|ZP_03019378.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227815396|ref|YP_002815405.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229604640|ref|YP_002866215.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254683329|ref|ZP_05147190.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723912|ref|ZP_05185698.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254734684|ref|ZP_05192396.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254741092|ref|ZP_05198780.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254755336|ref|ZP_05207370.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254759873|ref|ZP_05211897.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30256058|gb|AAP25693.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47502219|gb|AAT30895.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178591|gb|AAT53967.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|164714720|gb|EDR20238.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167513308|gb|EDR88679.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167531336|gb|EDR94014.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170127822|gb|EDS96694.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170669962|gb|EDT20703.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172083736|gb|EDT68796.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190562595|gb|EDV16562.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227006572|gb|ACP16315.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229269048|gb|ACQ50685.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEQQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|16764949|ref|NP_460564.1| repressor [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|167992775|ref|ZP_02573871.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16420129|gb|AAL20523.1| putative oxidoreductase [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|205329040|gb|EDZ15804.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246798|emb|CBG24612.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267993529|gb|ACY88414.1| putative repressor [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 14028S]
 gi|301158133|emb|CBW17630.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312912593|dbj|BAJ36567.1| putative repressor protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|321224229|gb|EFX49292.1| Transcriptional regulator yidN, Cro/CI family [Salmonella
          enterica subsp. enterica serovar Typhimurium str.
          TN061786]
 gi|323129874|gb|ADX17304.1| putative repressor [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 4/74]
 gi|332988492|gb|AEF07475.1| putative repressor [Salmonella enterica subsp. enterica serovar
          Typhimurium str. UK-1]
          Length = 178

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1  MDNLTH-YLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I    N      +  P ++   T   +++  ++
Sbjct: 55 IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVI 87


>gi|330896289|gb|EGH28384.1| peptidase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 78

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 152 RKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
            +G ++++++   V  G  ++   P + +   K L+   G    L  LN  Y +      
Sbjct: 6   PEGMMILVDTEADVQPGKLVIAKLPASNEATFKKLVEDGGTRY-LKPLNPAYKMIECGA- 63

Query: 211 DIEWIA 216
           D   I 
Sbjct: 64  DCRIIG 69


>gi|323702211|ref|ZP_08113878.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532898|gb|EGB22770.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 255

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + E + LT + LA  AG+      + ++  ++     PS +++ K+      + C  
Sbjct: 143 LKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQ-----PSLKTLEKLSEVMGVSPCYF 197

Query: 73  LDLP---FSDGRTTEKKEKEIPLLYFPPS 98
           +  P            + +E+ +     +
Sbjct: 198 IMEPGAVDQMVSLMNPELRELLIHPNVQA 226



 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I  + E    T   LAR+A L  +  ++ +R      ++ PS ++I K+ AA N
Sbjct: 5  GDQIRALREERGYTLQDLARRAKLSLSYLSEIERG-----SKRPSLKTIDKLAAALN 56



 Score = 41.7 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  +   +N++   LA K G+  +  ++ +R  +     +P+  ++ ++       
Sbjct: 74  LGEKIRIIRTENNMSLQELADKIGISLSYLSEIERGTV-----YPALNTLKRVAEGLGVP 128

Query: 69  ICQLLDLPF 77
              L+    
Sbjct: 129 ATALMGHEG 137


>gi|307324662|ref|ZP_07603868.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889544|gb|EFN20524.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 403

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 4/67 (5%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           H    EAI         T   LA   G   ++ ++ +R     R+     + +  +   
Sbjct: 6  QHSSAGEAISAARRARGWTQQQLADICGYSQSTISRLERGRQSARD----VDVLALVADR 61

Query: 65 TNETICQ 71
                 
Sbjct: 62 LGMDPSD 68


>gi|255019083|ref|ZP_05291209.1| transcription regulator, putative [Listeria monocytogenes FSL
          F2-515]
          Length = 81

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90
          T     D    + ++  ++ +  
Sbjct: 57 TPKDFFDEEEHNQKSNLRRTRAY 79


>gi|254390107|ref|ZP_05005328.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326441822|ref|ZP_08216556.1| helix-turn-helix domain protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197703815|gb|EDY49627.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 420

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          ++I + I R      L+   LA KAGL  ++  K+++     R +   T
Sbjct: 3  QEIGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHT 51


>gi|295835925|ref|ZP_06822858.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SPB74]
 gi|197698390|gb|EDY45323.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SPB74]
          Length = 509

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    + + LA       ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|160916303|ref|ZP_02078510.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991]
 gi|158432027|gb|EDP10316.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991]
          Length = 258

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I ++ +   L+   LA + G    + +K +         +P TE + ++      +
Sbjct: 3  LGEKIFKLRKEKGLSQEALAEQVGTTRQAISKWENDQG-----FPETEKLLRLSNIFEVS 57


>gi|39996520|ref|NP_952471.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens
          PCA]
 gi|39983401|gb|AAR34794.1| transcriptional regulator, Cro/CI family [Geobacter
          sulfurreducens PCA]
 gi|307634843|gb|ADI84259.2| helix-turn-helix DNA-binding protein, putative [Geobacter
          sulfurreducens KN400]
          Length = 142

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKA--GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           I  A+ R+     LT   LA     GLD T   K +R       + PS + +  I  A 
Sbjct: 4  NIGHALKRLRSERGLTQKDLAALVSGGLDYTYIGKIERGE-----QLPSLKILIGISEAL 58

Query: 66 N 66
           
Sbjct: 59 G 59


>gi|134298768|ref|YP_001112264.1| helix-turn-helix domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134051468|gb|ABO49439.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1]
          Length = 255

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + E + LT + LA  AG+      + ++  ++     PS +++ K+      + C  
Sbjct: 143 LKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQ-----PSLKTLEKLSEVMGVSPCYF 197

Query: 73  LDLP---FSDGRTTEKKEKEIPLLYFPPS 98
           +  P            + +E+ +     +
Sbjct: 198 IMEPGAVDQMVSLMNPELRELLIHPNVQA 226



 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  + E    T   LAR+A L  +  ++ +R      ++ PS ++I K+ AA N + 
Sbjct: 5  GDQIRALREERGYTLQDLARRAKLSLSYLSEIERG-----SKRPSLKTIDKLAAALNVSK 59

Query: 70 CQ 71
           Q
Sbjct: 60 TQ 61



 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  +     L+   LA K G+  +  ++ +R  +     +P+  ++ ++       
Sbjct: 74  LGEKIRIIRNETGLSLQELADKIGISLSYLSEIERGTV-----YPALNTLKRVAEGLGVP 128

Query: 69  ICQLLDLPF 77
              L+    
Sbjct: 129 ATALMGHEG 137


>gi|296277306|ref|ZP_06859813.1| phage repressor [Staphylococcus aureus subsp. aureus MR1]
          Length = 107

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +  +I + I ++ + +N+  +  A K G++ ++ ++ +       +R    E I +I 
Sbjct: 1  MRTSAEIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENG-----SRKIPMEDIAEIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89
           A   T   LL          + +   
Sbjct: 56 NALKVTPEYLLLKNRQPENEVQHRAAH 82


>gi|218677789|ref|ZP_03525686.1| transcriptional regulator, XRE family protein [Rhizobium etli
          CIAT 894]
          Length = 182

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +   H L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         R   
Sbjct: 59 GLAEFFAFEPERPRKAF 75


>gi|218463407|ref|ZP_03503498.1| MerR family transcriptional regulator [Rhizobium etli Kim 5]
 gi|218663344|ref|ZP_03519274.1| MerR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 182

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +   H L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGSRLRHLRLAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         +   
Sbjct: 59 GLAEFFAFEPERPKKAF 75


>gi|220916216|ref|YP_002491520.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans
          2CP-1]
 gi|219954070|gb|ACL64454.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans
          2CP-1]
          Length = 410

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S +K+ E I    +  NLT + LA K G+  T+    ++       R PS   + K+ 
Sbjct: 1  MISSQKLGERIAFARKNANLTQADLAAKIGVARTTLVAVEKGE-----RRPSNAELIKLA 55

Query: 63 AATNETICQ 71
               ++  
Sbjct: 56 GFLKVSVHD 64


>gi|330819769|ref|YP_004348631.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327371764|gb|AEA63119.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 189

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 19/164 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I    E    + + LA  +G+     +K +R         P+  S+ K+  A N 
Sbjct: 11  RIGARIRAERESRGWSLTNLAENSGVSRAMIHKIERGES-----SPTATSLAKLAGAFNL 65

Query: 68  TIC--------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNT 117
           ++         +   L   D +      +   +       S           P G     
Sbjct: 66  SMSALLALAELEDGRLLRVDDQPVWIDPQSGYVRRHVSPKSVSPLTLVEIDLPPGAG--- 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
           + +P     +          T    +        + GD L +  
Sbjct: 123 IPMPASAYLNMRQLIWVLDGTLVFVEG-GERHELQAGDCLEIGP 165


>gi|325453311|gb|ADZ13614.1| putative phage repressor [Cronobacter phage ENT39118]
          Length = 128

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 7/112 (6%)

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-ILNSAIQVNCGDRLLI 173
            +    P     +       T+         SM P     +++  +    +       + 
Sbjct: 8   EDNQKTPTDLVGNCEYSNFGTKVQHCVMNGDSMHPTIAPCEVVAFIACGGRAMTPGIYVY 67

Query: 174 KPRTGDIV---AKVLISRRGRSIDLMSLNCCYPVDTVEMS---DIEWIARIL 219
                       K +    G S+  +S N  Y   T+ +    D++   +++
Sbjct: 68  SRDVFGRTCMFIKRIEPLPGGSLRFISDNHFYKTFTLGIEEQNDLKIHGKVM 119


>gi|317403875|gb|EFV84348.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 201

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 46/151 (30%), Gaps = 18/151 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++ + +  +      +   LA +AG+   + ++ +   +      P+   + K+  A  
Sbjct: 24  QRLADRLKTLRVERGWSLDELAGRAGVSRATLSRLENAEV-----SPTASVLGKLCGAYG 78

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLY-----------FPPSGSGGFFDSGVFPTGNKW 115
            T+ +L+ +   D         +   +             P     G   +   P     
Sbjct: 79  MTMSRLMRMVEDDFTPLVPSAAQALWVDGGTGFRRRSVSPPSQKLAGEVLACELPAATHI 138

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
                P     H+ +  ++ +    +    S
Sbjct: 139 AYEHSPRAGLEHHLV-MLEGEL-SVRVDGQS 167


>gi|225575392|ref|ZP_03784002.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037337|gb|EEG47583.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM
           10507]
          Length = 167

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/116 (6%), Positives = 29/116 (25%), Gaps = 5/116 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   + E +  + ++   +   LA +  +   + +  +          PS     +
Sbjct: 1   MRKGTKGMLGEKLMTLRKKSGYSQQELADRLKVSRQTISNWELNQG-----APSIGKAKE 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +      ++  L+          +++     L                       +
Sbjct: 56  LADIYKISLDDLVGDEVEVVARKKREPDLHVLKKLVGKMVKLECSDIDLALEEGND 111


>gi|169351319|ref|ZP_02868257.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM
          1552]
 gi|169291541|gb|EDS73674.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM
          1552]
          Length = 212

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            SH  +   I  + +   +    LA K G++  S +K +R        +P+ E++ KI+
Sbjct: 7  KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59

Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87
             + T  +LL   +     +EK+ 
Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84


>gi|51247031|ref|YP_066914.1| related to transcription regulator proteins [Desulfotalea
          psychrophila LSv54]
 gi|50878068|emb|CAG37924.1| related to transcription regulator proteins [Desulfotalea
          psychrophila LSv54]
          Length = 85

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          M   S K+I +A+    ++  L+ S L ++ GLD    +  +      R
Sbjct: 6  MLLVSTKEIGDALRHKRKQMGLSQSELGKRVGLDQKKVSLMENGNPNTR 54


>gi|266623939|ref|ZP_06116874.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288864240|gb|EFC96538.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 147

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I  + E+  +T + LA K G    +  K +   +     +     + K L  T  
Sbjct: 2  NIGERIRGLREKQEMTQTELAEKIGSTKQTVYKYENGVVTNIP-YDKLILLAKALGTTPS 60

Query: 68 TICQLLDLPFSDGRTTEK 85
          ++     +  +      +
Sbjct: 61 SLMGWDKIEEAINEEFTR 78


>gi|210623634|ref|ZP_03293960.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275]
 gi|210153504|gb|EEA84510.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 18/147 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M      +I + I R+     LT   LA +  L     ++ +          PS  ++  
Sbjct: 1   MKM----EIGKKIKRLRIEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLID 51

Query: 61  ILAATNETICQLLDLPF--------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           IL      + +  +            D   TE +E +    +  P+      +  +    
Sbjct: 52  ILEILGTNLKEFFNDTESEKIVFVKDDMFETEDEELKYEFKWLVPNSQKNEMEPVIVTIQ 111

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTR 139
                    +        Y +      
Sbjct: 112 PGGQYKE-EKPHEGEEFGYVLAGSVFL 137


>gi|187921899|ref|YP_001893488.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
 gi|187720337|gb|ACD21559.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
          Length = 79

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           +A+  +  R  ++   LA +A LD +  +  +R       R P+ E++  +  A N +I
Sbjct: 10 GKALRSLRARRGMSQYSLANEANLDRSYISLLERGH-----RSPTLETMCSLAQALNVSI 64

Query: 70 CQLLDLPFSD 79
           +++ +  S 
Sbjct: 65 GEMIFVVESF 74


>gi|302522509|ref|ZP_07274851.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SPB78]
 gi|318058819|ref|ZP_07977542.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SA3_actG]
 gi|318075294|ref|ZP_07982626.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SA3_actF]
 gi|333023793|ref|ZP_08451857.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp.
          Tu6071]
 gi|302431404|gb|EFL03220.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SPB78]
 gi|332743645|gb|EGJ74086.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp.
          Tu6071]
          Length = 509

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    + + LA       ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|237786506|ref|YP_002907211.1| HTH_3 family transcriptional regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759418|gb|ACR18668.1| transcriptional regulator, HTH_3 family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 498

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/125 (9%), Positives = 31/125 (24%), Gaps = 5/125 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++ +   L+ + LA   GL  +  N+ +       +R  ++  + KI       
Sbjct: 16  VGTRLKQLRKERELSQATLAHALGLSASYVNQIEND-----SRPLTSSVLRKITHVFGID 70

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S              +           D            V +       +
Sbjct: 71  EAFFSREDDSRLVAEVHDVTLDREVCPTSIDVQEVADLVHTHPELARALVDIHRRYRNVS 130

Query: 129 GIYAI 133
              ++
Sbjct: 131 DKLSL 135


>gi|160894107|ref|ZP_02074885.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50]
 gi|156864140|gb|EDO57571.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50]
          Length = 313

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI   + +  +  NLT   LA K G+   + ++ +          P    + ++    +
Sbjct: 4  KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGIN-----MPDLSILVQLAEYYD 58

Query: 67 ETICQ 71
            + +
Sbjct: 59 VEMRE 63


>gi|21222594|ref|NP_628373.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|256786334|ref|ZP_05524765.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|9857155|emb|CAC04034.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 141

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +  A   +   L           ++++ E   +    
Sbjct: 56 VAKALRISAETLYVRAGILDAERDREDVETRAVILAD 92


>gi|310828555|ref|YP_003960912.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612]
 gi|308740289|gb|ADO37949.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612]
          Length = 268

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 5/100 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++ ++   +   LA + G+   + +K +          P   ++  +      ++ 
Sbjct: 5   ERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSN-----PDINNLVFLSEIFEVSLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           +L+          E+  K + +              G  P
Sbjct: 60  ELIKGEAPQASEKEETIKIVEVPCSRHYEYKSRHHIGGIP 99


>gi|295705479|ref|YP_003598554.1| DNA-binding protein [Bacillus megaterium DSM 319]
 gi|294803138|gb|ADF40204.1| DNA-binding protein [Bacillus megaterium DSM 319]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +++  +   L+   LA+ A + P+  ++ +R              + K L     
Sbjct: 5   DIGKKVEKFRKEKGLSSRELAKLADITPSMLSQIERGLANPSISTLKL--LAKSLDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + +++            S  F  +           + VP + +  
Sbjct: 63  SFLLEEINTSHLVVRSNERKTMKVKELKYSLLSPDFTGNLATAI------MEVPPMMASS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
               A + ++  +  + 
Sbjct: 117 ETPLAHKGEEVAYVLEG 133


>gi|256544578|ref|ZP_05471950.1| Xre family toxin-antitoxin system, antitoxin component
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399467|gb|EEU13072.1| Xre family toxin-antitoxin system, antitoxin component
           [Anaerococcus vaginalis ATCC 51170]
          Length = 132

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 8/124 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ E  NLT   LA+  G+   + ++ +    + R R        KI     E +   
Sbjct: 7   LRKLRENKNLTQEELAKLVGVSLKTISRYEMGESKPRYR--------KIYDKLAEVLDTS 58

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            D   +D        +E                      G + N      I       Y 
Sbjct: 59  HDYLVTDEENFILDVREKYGYKGAKDAKEMVDGVIGLMAGGEINEEDKKAILDSIQEAYY 118

Query: 133 IQTQ 136
           I   
Sbjct: 119 IAKN 122


>gi|237736543|ref|ZP_04567024.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229420405|gb|EEO35452.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 183

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I +      L+   LA K  L  +  ++ ++         PS E++ KI  + +  
Sbjct: 4   IGERIKKSRNDRGLSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIATSLDVK 58

Query: 69  ICQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  L++       T   +K+    +     +       +       +     +       
Sbjct: 59  VSYLIEDEEEKQNTELVRKDNRKYIESLDSNTKMALLTTSNIDKAMEPILYEIGPYGESG 118

Query: 128 NGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVN 166
              Y+   ++  +  +         ++    +GD L   S+ +  
Sbjct: 119 RSYYSHHGEEFIYIVEGKLDVYIDDVVHSLNEGDSLYFKSSQRHR 163


>gi|210611267|ref|ZP_03288822.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787]
 gi|210152031|gb|EEA83038.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787]
          Length = 122

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K+I + I +  ER  LT    A K G      +  +R        +P  E++  +L A  
Sbjct: 15 KRIGKRIKQCRERLGLTQEEFAEKTGFTANYISTLERGAS-----FPRCENLILLLNALE 69

Query: 67 ETICQLLDLPFSD 79
           +   +       
Sbjct: 70 VSADAIFCDVLDH 82


>gi|154125371|gb|ABS59302.1| hypothetical protein [Vibrio cholerae]
          Length = 80

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 146 SMLPLYRKGDILILNSAIQVNCGDRLLIK-PRTGDIVAKVLISRRGRSIDLMSLNCCYPV 204
           S      +G +++++  +  + G  ++ +   + +   K L+    +   L  LN  YP 
Sbjct: 1   SGKKSIPEGAVIVVDPELPYSSGSLVVARLDDSKEATFKQLVIDGEQKY-LKPLNPQYPA 59

Query: 205 DTVEMSDIEWIARI 218
             +  +    I  +
Sbjct: 60  IPINGN-CTIIGVV 72


>gi|322436743|ref|YP_004218955.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164470|gb|ADW70175.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 73

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++I  + E    +   LA +AGL        +R       R    E+I K+  A 
Sbjct: 11 GKSIRTLREERGYSQEELAERAGLHRNYVGGIERGE-----RNVGLENIVKLAKAL 61


>gi|266619410|ref|ZP_06112345.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM
           13479]
 gi|288869037|gb|EFD01336.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM
           13479]
          Length = 177

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 14/138 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +     LT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2   DIGAKLKELRILKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56

Query: 68  TICQLLDLPFS--------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I +  +            D      +E +  + +  P+      +  +        T  
Sbjct: 57  SIGEFFNETPEEQIVFGKTDYFEKHDQELKNEIKWIIPNAQKNMMEPILLTLEPGGETYP 116

Query: 120 VPEIRSPHNGIYAIQTQD 137
                      Y +Q   
Sbjct: 117 -DNPHEGEEFGYVLQGNI 133


>gi|258515474|ref|YP_003191696.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257779179|gb|ACV63073.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 255

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           E I  + E    T   LAR+A L  +  ++ +R      ++ PS ++I K+ A  N
Sbjct: 5  GEQIRALREERGYTLQELARRANLSFSYLSEIERG-----SKKPSLKTIEKLAAVLN 56



 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + E+   T + LA  AG+      + ++  ++     PS +++ K+      +
Sbjct: 139 LGNKLKALREKQGYTQAKLAELAGVTAGLIGQIEQSKVQ-----PSLKTLEKLSGVLGIS 193

Query: 69  ICQLLDLPF 77
            C  +  P 
Sbjct: 194 ACYFIMEPG 202


>gi|227824109|ref|YP_002828082.1| putative transcriptional regulator with cupin 2 conserved barrel
           [Sinorhizobium fredii NGR234]
 gi|227343111|gb|ACP27329.1| putative transcriptional regulator with cupin 2 conserved barrel
           [Sinorhizobium fredii NGR234]
          Length = 197

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 5/118 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            + I E +  M     LT   LA ++G+     ++ +R         P+ + + K+ +A 
Sbjct: 14  EQTIGERVREMRTVQALTLDELAIRSGVSRAMISRIERGEA-----SPTAQLLAKLCSAL 68

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             T+  L      +     ++ ++                            V  P  
Sbjct: 69  GTTLSALFASAAENASPVARRAEQRLWRDPESGYLRRSVSPDGLGAPVDIVEVEFPPG 126


>gi|210610950|ref|ZP_03288675.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787]
 gi|210152250|gb|EEA83257.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787]
          Length = 198

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 38/172 (22%), Gaps = 16/172 (9%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T  S ++I +AI +      +T    A++ G    +  K +   I         + + +I
Sbjct: 10  TMSSSEEIGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEI-----LLKIDVLKQI 64

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               N    +LL    ++        +         +         +             
Sbjct: 65  ANELNVPWQELLFAKDTNTPKDNTTAEYP-------AYEFHTMSDVINALFAITELTDFS 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTS---MLPLYRKGDILILNSAIQVNCGDR 170
              +               K            +       +     +  G  
Sbjct: 118 FELTNTKPP-ESPEWTAGIKVNGKGNGKYDADFCLFMENWIEKKNMLQTGKI 168


>gi|54023526|ref|YP_117768.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54015034|dbj|BAD56404.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 391

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   + + +  + +R +LT + LA  AG+  ++  K ++         P   ++ K
Sbjct: 1   MPDRTRD-LGDRLASIRKRRSLTQAELAEAAGVSVSTVCKLEQHEYG----TPRLATLRK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           + AA       L      D    +    ++         +    D    PT
Sbjct: 56  LAAALGVPTSVLQGEHHGDAEPADTATLDLWEPVRHALAAPPEPDETDQPT 106


>gi|322392499|ref|ZP_08065959.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
 gi|321144491|gb|EFX39892.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
          Length = 99

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          T      +   +  +  R  L  + LA+ AG+   + +  +R         PS     KI
Sbjct: 27 TKEKKDMLKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIVIALKI 81

Query: 62 LAATN 66
              +
Sbjct: 82 AQIFH 86


>gi|304439266|ref|ZP_07399183.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372234|gb|EFM25823.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 185

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I  + + + ++   LA K G+   + +K +          P  E I  +      T  
Sbjct: 5   DRIQYLRKTNGISQEELAVKVGVSRQAVSKWESGQS-----LPDLEKIITMSDYFGVTTD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            +L          +K  +    + +  S +  F   G+F     W
Sbjct: 60  YILKGIEPVADKEQKSSELKSKILYIASTA--FVWIGLFSAFAGW 102


>gi|149187669|ref|ZP_01865966.1| probable transcriptional regulator [Vibrio shilonii AK1]
 gi|148838549|gb|EDL55489.1| probable transcriptional regulator [Vibrio shilonii AK1]
          Length = 180

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/191 (9%), Positives = 54/191 (28%), Gaps = 18/191 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + +  +     ++   LA+++G+  +  ++ ++  +      PS  S+ KIL A   
Sbjct: 2   DVGKQLKTIRTMRGMSQRELAKRSGVTNSMISQIEQNLVN-----PSVGSLKKILDAIPI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +   L            +++  L                        +  P      
Sbjct: 57  SMGEFFTLDVEPKDDIFFSAEQMADLGDGQIKMLLVGAKREGRQLAVLREI-YPPGSDTG 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
                   ++     +    +         + +    +  GD    + R          +
Sbjct: 116 TDFIEHDGEEGGVIIRGEIEI--------TVGSHTRVLKAGDSYYFETRKPH----RFRN 163

Query: 188 RRGRSIDLMSL 198
           +     +L+S 
Sbjct: 164 KGKVECELISA 174


>gi|170728642|ref|YP_001762668.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908]
 gi|169813989|gb|ACA88573.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC
           51908]
          Length = 181

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 12/147 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +H LT   LA  AG+   +    +          PS   + K+  A   T
Sbjct: 5   INEGIKRLRAQHKLTQIELAEMAGIPRATLANMESSNSN-----PSISVVMKVAQALGVT 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------- 121
           +  L+    S   T  +++                            + + +P       
Sbjct: 60  VDDLITQRQSVHVTKVERKDMPVSHQDEGKFISTRTSPISTQNLQISDVIMMPGCNTKGV 119

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML 148
                 + ++         + Q     
Sbjct: 120 PHPEGSHELFLCLDGTATLEVQGELFE 146


>gi|330399475|ref|YP_004030573.1| Cro/CI family transcriptional regulator [Burkholderia rhizoxinica
          HKI 454]
 gi|312170212|emb|CBW77251.1| Transcriptional regulator, Cro/CI family [Burkholderia
          rhizoxinica HKI 454]
          Length = 130

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I +AI R      LT   L+  AGL   S ++ +R  +      P  + + ++    +  
Sbjct: 15 IGQAIARQRRLRGLTQEQLSEAAGLAQASLSQIERGRV-----LPGLDRLAQLAQLLDCR 69

Query: 69 ICQ 71
          +  
Sbjct: 70 LVD 72


>gi|256845921|ref|ZP_05551379.1| predicted protein [Fusobacterium sp. 3_1_36A2]
 gi|256719480|gb|EEU33035.1| predicted protein [Fusobacterium sp. 3_1_36A2]
          Length = 139

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 9/141 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S       + ++ E+  +T   L + +G+   +    +R    G+ +    E++ K
Sbjct: 1   MADLSI-----TLKKLREKKGITQQELVKLSGVGQGTIGDIER----GKIKKSRLETLEK 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I  A      +  +L           +     LY      G    + +            
Sbjct: 52  IAKALKLDEEERKELFSVLVPKDIGIKILQNPLYRQLDSRGKRQFNDIIEQSALMFNDET 111

Query: 121 PEIRSPHNGIYAIQTQDTRHK 141
                    + AIQ+     K
Sbjct: 112 ISEEDKERVLMAIQSAFFIAK 132


>gi|288947755|ref|YP_003445138.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
          180]
 gi|288898271|gb|ADC64106.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
          180]
          Length = 79

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 15/45 (33%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
           K++   +        L  + LA + GL     ++ +      R 
Sbjct: 7  RKELGHRLKVRRTELGLNQTELAERIGLTQAYISQWELGTRAMRI 51


>gi|238921784|ref|YP_002935298.1| hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC
          27750]
 gi|238873456|gb|ACR73164.1| Hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC
          27750]
          Length = 177

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          S   KKI   +  + +  ++T   LA K  +   + ++ +          P    + ++ 
Sbjct: 6  SMDQKKIGSFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGSN-----MPDISLLAQLA 60

Query: 63 AATNETICQ 71
             + +I +
Sbjct: 61 DFYDVSIPE 69


>gi|164687366|ref|ZP_02211394.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM
           16795]
 gi|164603790|gb|EDQ97255.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM
           16795]
          Length = 125

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + + ++    NL+ S L++  G+  ++    ++       R+P    + KI    + + 
Sbjct: 3   GQNLKKLRTSKNLSQSKLSKILGISSSTIGMYEQG-----RRFPDQTILTKIADFFDVST 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIP--LLYFPPSGSGGFFDSGVFPTGNKWN 116
             LL     +  T      +    +L  P   + G +D+         +
Sbjct: 58  DYLLGRNPQNPPTEFNNATDAMEFILKLPTVMAYGGYDATKLSDEEIID 106


>gi|166033610|ref|ZP_02236439.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC
          27755]
 gi|210608449|ref|ZP_03287825.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787]
 gi|317500066|ref|ZP_07958301.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|166026795|gb|EDR45552.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC
          27755]
 gi|210153068|gb|EEA84074.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787]
 gi|316898551|gb|EFV20587.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 211

 Score = 49.0 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            SH  +   I  + +   +    LA K G++  S +K +R        +P+ E++ KI+
Sbjct: 7  KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59

Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87
             + T  +LL   +     +EK+ 
Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84


>gi|257871225|ref|ZP_05650878.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805389|gb|EEV34211.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 346

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E I +  ++  LT   LA++ G+   + NK ++         P    +  I    + 
Sbjct: 2  EMGEVIRQYRKKKGLTQEELAKRLGVTAPAVNKWEKGHS-----HPDILLLAPIARLLDI 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|258512333|ref|YP_003185767.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479059|gb|ACV59378.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 165

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I ++ +   LT + LA +A L  ++    +        R P   ++ +I  A    
Sbjct: 10  VGERIAQLRKERGLTQAKLAERARLSTSAIAMYE-----TNRRQPDERTLAQIAEALGVE 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           + Q+     +   + + K           + +    +      G+ 
Sbjct: 65  MTQIAPHLTASAASRQAKPAPNESHPGDRAAAASEPNRAEREVGDA 110


>gi|83717911|ref|YP_440137.1| Cro/CI family transcriptional regulator [Burkholderia
          thailandensis E264]
 gi|83651736|gb|ABC35800.1| transcriptional regulator, Cro/CI family, putative [Burkholderia
          thailandensis E264]
          Length = 189

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S S++ +   +  +  ++ L+   LA++AG+   + +  ++         PS  S+ K+
Sbjct: 5  PSMSNE-VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQ-----SRVSPSVGSLKKL 58

Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          L     ++ +       + R+   +  E+P L
Sbjct: 59 LECIPMSLAEFFTFEVDENRSVVSRRDEMPNL 90


>gi|119714341|ref|YP_921306.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614]
 gi|119535002|gb|ABL79619.1| helix-turn-helix domain protein [Nocardioides sp. JS614]
          Length = 210

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            AI R+  +  L+ S LA ++G+   + +  +R         P+ E+IF +       I 
Sbjct: 17  RAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGN-----PTLETIFALSRGLGVPIG 71

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           +L+        T   ++    +             +        ++   +P  R
Sbjct: 72  ELVSSEEEAASTFVGRDDARHIRGVAVELMLYDRFASTGSATEIYDFRCLPGDR 125


>gi|320006892|gb|ADW01742.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 202

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 6/130 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+ +   +T + L+   G+  ++ ++ +  G     R PS E +  I  A    
Sbjct: 21  VGPRLRRLRKDRGVTLAALSEATGISVSTLSRLESGG-----RRPSLELLLPIARAHEVP 75

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLY-FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  L+  P         K          P +   G   +           V        +
Sbjct: 76  LDDLVGAPPVSDPRVRAKPIVHGSRTSLPLTSRPGGLQAYKVVQKAPCTEVPEQRTHEGY 135

Query: 128 NGIYAIQTQD 137
             +Y +  + 
Sbjct: 136 EWLYVLSGRL 145


>gi|253579239|ref|ZP_04856509.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849337|gb|EES77297.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 313

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI   + +  +  NLT   LA K G+   + ++ +          P    + ++    +
Sbjct: 4  KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGIN-----MPDLSILVQLAEYYD 58

Query: 67 ETICQ 71
            + +
Sbjct: 59 VEMRE 63


>gi|251791287|ref|YP_003006008.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247539908|gb|ACT08529.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 195

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 48/146 (32%), Gaps = 17/146 (11%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           + +++ E +  +      +   L++ +G+   + ++ +R         P+   + ++ A 
Sbjct: 14  TDRRLAERLAALRRERGWSLDELSQSSGISRATLSRLERMES-----SPTAVLLGRLCAV 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLY-----------FPPSGSGGFFDSGVFPTGN 113
              T+  LL              ++   +             P +G       G  P G 
Sbjct: 69  YGCTMSSLLAEVEIQLPQKLSAAQQPVWIDPETGFIRRSVSPPSAGFRAEMIHGELPAGA 128

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTR 139
           + +    P +    + +Y ++ Q   
Sbjct: 129 RIDYHA-PPLAGLEHHLYVLEGQLVM 153


>gi|148244468|ref|YP_001219162.1| hypothetical protein COSY_0313 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326295|dbj|BAF61438.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 138

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
           ++    +     M+P + +  I+I++ +++++     +++    +I  +  I R  R   
Sbjct: 19  SEPFALQNLGKYMIPEFSENCIVIIDPSMKIHNHAYTVVRYDM-EIYFRQYIERGSRKF- 76

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L+ LN  Y    +   +   +  ++
Sbjct: 77  LICLNTQYDDIEL-KGEFTVVGCVI 100


>gi|323485345|ref|ZP_08090694.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum
           WAL-14163]
 gi|323401381|gb|EGA93730.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum
           WAL-14163]
          Length = 177

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 35/139 (25%), Gaps = 16/139 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +     LT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2   NIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56

Query: 68  TICQLLDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           TI +  +                  + + K       P +         +  +       
Sbjct: 57  TIGEFFNETPEEQIVFGKNDYFTKEDTELKNEIKWIIPNAQKNIMEPIHLVLSPGGSTYP 116

Query: 119 GVPEIRSPHNGIYAIQTQD 137
             P         Y +Q   
Sbjct: 117 DTP--HEGEEFGYVLQGSI 133


>gi|309774998|ref|ZP_07670014.1| transcriptional regulator, PbsX family [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|319936258|ref|ZP_08010677.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1]
 gi|325262574|ref|ZP_08129311.1| transcriptional regulator, PbsX family [Clostridium sp. D5]
 gi|308917252|gb|EFP62976.1| transcriptional regulator, PbsX family [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|319808690|gb|EFW05232.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1]
 gi|324032406|gb|EGB93684.1| transcriptional regulator, PbsX family [Clostridium sp. D5]
          Length = 211

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            SH  +   I  + +   +    LA K G++  S +K +R        +P+ E++ KI+
Sbjct: 7  KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59

Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87
             + T  +LL   +     +EK+ 
Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84


>gi|302558470|ref|ZP_07310812.1| signal peptidase [Streptomyces griseoflavus Tu4000]
 gi|302476088|gb|EFL39181.1| signal peptidase [Streptomyces griseoflavus Tu4000]
          Length = 144

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD L+++   +V  GD ++++       +V K    RR     ++  
Sbjct: 21  EVTGPSMVPTLHHGDRLLVHYGARVKRGDVIVLRHPFQQDLLVVKRAAERRDGGWWVLGD 80

Query: 199 NCCYP-----VDTVEMSDIEWIARI 218
           N  Y         V   ++  + R+
Sbjct: 81  N-AYAGGDSTDYGVVPDEL-VLGRV 103


>gi|222530625|ref|YP_002574507.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457472|gb|ACM61734.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 118

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    +KKI + +  + ++   T   +A+  G+     +  +        R  S + + +
Sbjct: 1  MKEEVYKKIGKRLQELRKQRGFTQEQVAKYLGITQEQLSHYENG-----KREVSVDILLQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
          +          LL    +         +   +
Sbjct: 56 LARLYGCDYNYLLGEEQNTDEQITMNFRADEI 87


>gi|251778650|ref|ZP_04821570.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243082965|gb|EES48855.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 96

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +   +T   LA    +  +S N  +  G+E     PS   + KI    N +
Sbjct: 2  LGDRIKSLRKEQGITQDQLAEYINVSRSSVNGYENDGVE-----PSLSVLVKISDRFNVS 56

Query: 69 ICQLLDLPFSDGR 81
          +  LL+       
Sbjct: 57 LDYLLERTEEKHN 69


>gi|167578709|ref|ZP_02371583.1| transcriptional regulator, Cro/CI family, putative [Burkholderia
          thailandensis TXDOH]
 gi|167616842|ref|ZP_02385473.1| transcriptional regulator, Cro/CI family, putative [Burkholderia
          thailandensis Bt4]
 gi|257140768|ref|ZP_05589030.1| Cro/CI family transcriptional regulator putative [Burkholderia
          thailandensis E264]
          Length = 183

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   +  +  ++ L+   LA++AG+   + +  ++         PS  S+ K+L    
Sbjct: 3  NEVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQ-----SRVSPSVGSLKKLLECIP 57

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
           ++ +       + R+   +  E+P L
Sbjct: 58 MSLAEFFTFEVDENRSVVSRRDEMPNL 84


>gi|291546039|emb|CBL19147.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 318

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI   + +  +  NLT   LA K G+   + ++ +          P    + ++    +
Sbjct: 4  KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGIN-----MPDLSVLVQLAEYYD 58

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
            + +LLD   S     + KE    +  +  
Sbjct: 59 VEMRELLDGERSQTMNKDMKETLDKVAVYEE 89


>gi|331085708|ref|ZP_08334791.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406631|gb|EGG86136.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 129

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I     +  ++   LA  A L     +  +        R PS ES+ KI  A   T
Sbjct: 8  IGIRIKETRNQQGISAEELAELANLSSVYISYIENA-----KRKPSLESLIKICNALGIT 62

Query: 69 ICQLLDLPFSDGRTTE 84
          + +LL        T  
Sbjct: 63 LDELLYGNLLYNPTEY 78


>gi|313885249|ref|ZP_07819001.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619940|gb|EFR31377.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 371

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I    ++  LT   LA   G+  ++ +K +R         P   ++ +I      +
Sbjct: 7  VGPQIKIFRKQKGLTQEALAEALGVTVSAVSKWERGQT-----LPDLPTLLEIAQFFQIS 61


>gi|238924521|ref|YP_002938037.1| hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656]
 gi|238876196|gb|ACR75903.1| Hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656]
 gi|291525206|emb|CBK90793.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
 gi|291529334|emb|CBK94920.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 179

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  ++ LT   LA +A L     ++ +R         PS  ++  I+     
Sbjct: 2  DIGHRMKELRIQYGLTQQELADRAELTKGFISQLERNQN-----SPSVGTLLDIIQCLGM 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
          T  +       +    +  +    +
Sbjct: 57 TPAEFFTDSEPEQIVYKANDYFEKI 81


>gi|29830555|ref|NP_825189.1| DNA-binding protein [Streptomyces avermitilis MA-4680]
 gi|29607667|dbj|BAC71724.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680]
          Length = 158

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +  A   +   L           ++ E E   +    
Sbjct: 56 VAKALRISAETLYVRAGILDAERDRDEVETRAVLLAD 92


>gi|325134241|gb|EGC56889.1| hypothetical protein NMBM13399_1086 [Neisseria meningitidis M13399]
 gi|325144713|gb|EGC67010.1| hypothetical protein NMBM01240013_0858 [Neisseria meningitidis
           M01-240013]
 gi|325204122|gb|ADY99575.1| conserved domain protein [Neisseria meningitidis M01-240355]
 gi|325206098|gb|ADZ01551.1| conserved domain protein [Neisseria meningitidis M04-240196]
          Length = 56

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM----SDIEWIARILWA 221
                D+  K +       + + S N  Y    +++     DI  I R+ W 
Sbjct: 1   MRIGNDLFVKRVQRIP-GKLLVTSENPRYAPFEIDLSNTQDDIAIIGRVEWY 51


>gi|302878682|ref|YP_003847246.1| helix-turn-helix domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302581471|gb|ADL55482.1| helix-turn-helix domain protein [Gallionella capsiferriformans
          ES-2]
          Length = 124

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I    ++ N T + LA + G+D  + ++ +R         PS   + K+  A    
Sbjct: 16 LGANIAERRKKLNWTQAELAERIGVDTETVSRFERGSN-----LPSLHRLEKLAEALKIP 70

Query: 69 IC 70
          + 
Sbjct: 71 LY 72


>gi|261339922|ref|ZP_05967780.1| toxin-antitoxin system, antitoxin component, Xre family
           [Enterobacter cancerogenus ATCC 35316]
 gi|288317836|gb|EFC56774.1| toxin-antitoxin system, antitoxin component, Xre family
           [Enterobacter cancerogenus ATCC 35316]
          Length = 191

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 38/148 (25%), Gaps = 14/148 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E    + S LA +A +     +K +R         P+   + ++  A 
Sbjct: 9   NQRISARIRLERESRGWSLSELADRASVSRAMIHKIERGES-----SPTATLLARLSGAF 63

Query: 66  NETICQLLDLPFSD--------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             ++  L+               +   +  +   L       +    D          + 
Sbjct: 64  GISMSTLIARAEMQEGKLLRLANQPVWRDPQTHYLRRHVSPRTDLPIDLVQVELPAGSD- 122

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
           V +P                     +  
Sbjct: 123 VPMPASSYALARQLIWLQSGKLVFLEGD 150


>gi|34496668|ref|NP_900883.1| hypothetical protein CV_1213 [Chromobacterium violaceum ATCC
          12472]
 gi|34102523|gb|AAQ58888.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
          12472]
          Length = 115

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +++I +A+ R  +   +    LA K G+   + ++ +R  I+     P+   + ++    
Sbjct: 10 NQRIGQAVARHRKALGMNQEDLAEKLGVGLEAISRLERGRIK-----PTLVRLLELAEVL 64

Query: 66 NETICQ 71
            ++  
Sbjct: 65 GCSVND 70


>gi|312887403|ref|ZP_07747002.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM
           18603]
 gi|311300043|gb|EFQ77113.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM
           18603]
          Length = 138

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 3/103 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +F    I   I+R+ E   +    LA   G+   + ++ ++            E I K
Sbjct: 1   MQTFRKIHIGRNIERLREFKGIKQEVLASGLGVSQQTISRIEQSETVD---EVKLEQIAK 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
           +L  T E I    D        T          Y   S     
Sbjct: 58  LLGVTKEAIKNYSDEAVIFHIQTMNDNASANYQYNSNSVERIV 100


>gi|210617016|ref|ZP_03291351.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787]
 gi|210149539|gb|EEA80548.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787]
          Length = 163

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 7/61 (11%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I  + +   ++   +++   +  ++++  +        R PS + I K+      
Sbjct: 8  QIGSTIKELRKAKGISQKEMSKLLDIPYSTYSNYENNN-----REPSADVIKKVSDILEI 62

Query: 68 T 68
          +
Sbjct: 63 S 63


>gi|169342435|ref|ZP_02863498.1| LexA repressor [Clostridium perfringens C str. JGS1495]
 gi|169299434|gb|EDS81499.1| LexA repressor [Clostridium perfringens C str. JGS1495]
          Length = 330

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 11/219 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++++ E++N +   L          FN+ KR      N     + + K    T +   ++
Sbjct: 92  LNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDIKLFQELSKEFTNTLDKEHEI 151

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNG 129
                 + +             F  S       +  F   +    V            + 
Sbjct: 152 NLSDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISK 211

Query: 130 IYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
             A+ +        + +  SM  L++  +++I         GD ++       +      
Sbjct: 212 SIALPSNYKDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC-KK 270

Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222
           I ++   ++L   +   Y +   +  SDI  I  ++  S
Sbjct: 271 IHKKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 308



 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I    +++ L+ + LA K G+  T+    +R  +E     P+  ++ ++    N +
Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVE-----PNIYTLIQLSKLMNRS 63


>gi|120401814|ref|YP_951643.1| hypothetical protein Mvan_0799 [Mycobacterium vanbaalenii PYR-1]
 gi|119954632|gb|ABM11637.1| protein of unknown function DUF955 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 475

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGARIRQLRSERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    +      ++      L      +      G  P 
Sbjct: 61  ATFFASQDDTRLIAELREVLMDRDLDVDVDPAEVADMVGSHPA 103


>gi|289671657|ref|ZP_06492547.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. syringae FF5]
 gi|302187361|ref|ZP_07264034.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. syringae 642]
 gi|330941463|gb|EGH44274.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330954133|gb|EGH54393.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae Cit 7]
 gi|330970149|gb|EGH70215.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 182

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L     T+
Sbjct: 4   GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58

Query: 70  CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                     G+                  + + +    PS    F      P     ++
Sbjct: 59  ADFFTFDQPPGQDQYVFRAGDQPDLGRNGARLLLVGATLPSRQMRFLREQYAP---GADS 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              P + S       +              +                   GD        
Sbjct: 116 GDEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PGDGYYFPTTL 159

Query: 178 GDIVAKVLISRRGRSIDLMSLN 199
                    +      +++S N
Sbjct: 160 PH----RFRNIGQDEAEIISAN 177


>gi|167041843|gb|ABZ06584.1| putative helix-turn-helix motif protein [uncultured marine
           microorganism HF4000_097M14]
          Length = 474

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 54/194 (27%), Gaps = 24/194 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I        ++ + +A+K  + P+  N  +        R  S + + K+      
Sbjct: 7   QIGYKIKSKRRSLGISQADMAKKLSISPSYLNLIESG-----KRKISVDLLLKVANELGI 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI-RSP 126
            I  +     ++            L+           D   F      NT  +       
Sbjct: 62  EISDISKKTDTNL--------YQNLMDVLGDNLFEDLDITNFDIKEIINTSPLIAKALIK 113

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
               Y  + Q+   K ++ S            +++      G+ +    +  +     L 
Sbjct: 114 LGDNYKKKNQEIVSKVENISGK---------FIDNQKNSFPGEVVSDFIQENENYFPKLE 164

Query: 187 SRRGRSI-DLMSLN 199
               +   ++ + N
Sbjct: 165 EFANKVFSEIQNDN 178


>gi|149927176|ref|ZP_01915433.1| hypothetical protein LMED105_07038 [Limnobacter sp. MED105]
 gi|149824115|gb|EDM83336.1| hypothetical protein LMED105_07038 [Limnobacter sp. MED105]
          Length = 792

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 29/136 (21%), Gaps = 19/136 (13%)

Query: 97  PSGSGGFFDSGVFPTGNKWNTVGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
            + +        F  G                             + +  SM      G 
Sbjct: 645 EAANSVPIFDLKFAAGQFSEYQQADTFDHVVLPAHLRASEGYFVARVEGDSMNKRIPPGA 704

Query: 156 ILILNSAIQ-VNCGDRLLIKPRT-------GDIVAKVLISRR--------GRSIDLMSL- 198
             + +   Q    G  ++++ R        G    K   S +           + L    
Sbjct: 705 WCLFHFNPQGTRNGKIVVVQHRRISDPELGGQYTIKRYKSEKHFGEDGVVNSVVVLTPES 764

Query: 199 -NCCYPVDTVEMSDIE 213
            N  +    +   D E
Sbjct: 765 TNDKHEAIVLSAEDAE 780


>gi|83940972|gb|ABC48877.1| hypothetical protein [Enterococcus faecium]
          Length = 203

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 47/169 (27%), Gaps = 8/169 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I  + +   ++   LA K G+   + +K +          P  E +  +      T  
Sbjct: 5   DRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQST-----PDLEKVIIMSDFFGVTTD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            +L          +K ++    + +  S +              W  +   E+ +    I
Sbjct: 60  YILKGIEPVNDKEQKSKEIASKILYISSTAFVAIGLLC--AFGGWYELQTMEVVAGSMII 117

Query: 131 YAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            A+        +         Y     +I  + + +     +   P   
Sbjct: 118 QAVGIIGYFIARILSEEKATFYVSWFNIIGITFMPIFYDYGIYFYPCFQ 166


>gi|86559618|ref|YP_473438.1| LexA repressor [Clostridium perfringens]
 gi|86475890|dbj|BAE79065.1| LexA repressor [Clostridium perfringens]
          Length = 330

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 11/219 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++++ E++N +   L          FN+ KR      N     + + K    T +   ++
Sbjct: 92  LNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDIKLFQELSKEFTNTLDKEHEI 151

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNG 129
                 + +             F  S       +  F   +    V            + 
Sbjct: 152 NLSDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISK 211

Query: 130 IYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
             A+ +        + +  SM  L++  +++I         GD ++       +      
Sbjct: 212 SIALPSNYKDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC-KK 270

Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222
           I ++   ++L   +   Y +   +  SDI  I  ++  S
Sbjct: 271 IHKKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 308



 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I    +++ L+ + LA K G+  T+    +R  +E     P+  ++ ++    N +
Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVE-----PNIYTLIQLSKLMNRS 63


>gi|325126457|gb|ADY85787.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
          Length = 119

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +  +  R  ++   LA   G+   + +  +        + P  +++ KI      +
Sbjct: 6  IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVDKIANIFGVS 60

Query: 69 IC 70
            
Sbjct: 61 RN 62


>gi|325264311|ref|ZP_08131042.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324030382|gb|EGB91666.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 139

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I +  +   LT   LA K G    +  + +        R P  E + KI    N  
Sbjct: 3  VGDNIKKARKNAGLTQKELAEKCGAAEITIRQYES-----SKREPRNEQLMKIARLLNVE 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          +  LL     +     +K +   L   
Sbjct: 58 LYDLLGYTVPEQNEHVQKARAQVLQDI 84


>gi|288573106|ref|ZP_06391463.1| transcriptional regulator, XRE family [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568847|gb|EFC90404.1| transcriptional regulator, XRE family [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 212

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 38/137 (27%), Gaps = 1/137 (0%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +  + I  + +R  LT   LA+K G+  T+    ++   E  +R  + +    +   T+ 
Sbjct: 3   QTGDRIKELRKRKQLTQDQLAQKMGVSRTTVVSWEKSKFEP-DRQNTIDLAAALETTTSY 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +  D                P+                 P  +        +     
Sbjct: 62  LMGETDDPSPQKADRQVPSGILAPMRQETGLSLDEAAALIDLPAEDLELMEKYEDRADSV 121

Query: 128 NGIYAIQTQDTRHKTQD 144
                I+        +D
Sbjct: 122 LKQKLIKAYGRYLSARD 138


>gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 513

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   I    +   LT + LA   G   ++ N+ +R          S + + ++  A 
Sbjct: 14 RIGTLIRDARKHRGLTQTQLADLLGTSQSAVNRIERGAQN-----LSVDMLNRVSEAL 66


>gi|169334705|ref|ZP_02861898.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257443|gb|EDS71409.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM
           17244]
          Length = 125

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +++ + + I +  ++   + S LA K        +K +R   +      S +++  
Sbjct: 1   MIKINYENLGKQIKKYRKQKKYSQSDLAEKIDKSVQHISKIERGISKA-----SLQTLVD 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           I  A + ++ +LL++           +  I +          F    + 
Sbjct: 56  ITNALDISMDELLNMSVKKSSDNFLNKDFINIFSDCSLKERTFLMENLL 104


>gi|46579929|ref|YP_010737.1| transcriptional regulator cI, truncation [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46449345|gb|AAS95996.1| transcriptional regulator cI, truncation [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234073|gb|ADP86927.1| helix-turn-helix domain protein [Desulfovibrio vulgaris RCH1]
          Length = 96

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           IDR+ E   L+ S LAR +GL   +  +  R        +P   S      +   +  QL
Sbjct: 13  IDRIREEQGLSYSALARMSGLKTPTVWRHCRGKS-----FPDLGSCAAYARSLGISFEQL 67

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
               F+   T+    ++        S  
Sbjct: 68  RPDLFAGTPTSPSTPRKPRSHQHDASKQ 95


>gi|171317966|ref|ZP_02907140.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MEX-5]
 gi|171096866|gb|EDT41740.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MEX-5]
          Length = 159

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 10/120 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I +A+ +     +LT + LA+ AGL   + N+ +     G+ +      +  +L     
Sbjct: 5   EIGQAVAKRRAELDLTQAQLAKLAGLSRLTVNQLE----TGKIKDLGVNKLLPLLGVLGI 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN------KWNTVGVP 121
            +        S                           +G  P G         + V +P
Sbjct: 61  ELHAQPRPAQSGLYKAVVSSNVSYRGELTERLLADALTTGQIPAGYESQISVILDEVPLP 120


>gi|313897216|ref|ZP_07830760.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312957937|gb|EFR39561.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 212

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E I  + +   ++   LA KAG+   + +K +          P  E I  +      
Sbjct: 2   KLAERIQYLRKMKGISQEELAEKAGVSRQAVSKWESDQST-----PDVEKIIIMSDYFGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           T   +L    +     +K  +    + +  S +    
Sbjct: 57  TTDYILKGIQTVESKEQKSRELASKVLYISSAAFVVI 93


>gi|294633421|ref|ZP_06711980.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces sp. e14]
 gi|292831202|gb|EFF89552.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces sp. e14]
          Length = 181

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 11/117 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + ++   +  +     L+ S LAR++G+   + ++ +        R P+ ++++ +  A 
Sbjct: 4   NDEVGRRLRELRTARGLSLSELARRSGVGKGTLSELESGT-----RNPTLDTLYALTTAL 58

Query: 66  NET------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           N                  +G  +      + +     + +           G    
Sbjct: 59  NRPLSAVLADDAPPHGEHHEGAVSGSAVTAVLVERHEDADAVTDVFRVTIAAGATQE 115


>gi|262371446|ref|ZP_06064763.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262313668|gb|EEY94718.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 191

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 42/179 (23%), Gaps = 24/179 (13%)

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +         +  +     +  E   K         +          F  G  + T    
Sbjct: 1   MGPDGAPSPTVNTVFEKIQKEHELGSKFDLKEISVKTRLEIPSALERFSAGPAFGTKDHI 60

Query: 122 E-IRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +     ++ +          +    SML   +   D  +++ +I     D +L      +
Sbjct: 61  DKSIDLNDFLIFNPISTFMGRVDSESMLYAGFEIDDPFLVDKSITAQHRDIVLALIDERE 120

Query: 180 IVAKVL-------------------ISRRGRSIDLMSLNCCYPVDTVEMSD-IEWIARI 218
           I  K L                          I L + N  Y     + S  I     +
Sbjct: 121 ITLKRLMMTAKMSKQEIKEMFGDEDYELPP--IWLRAENPAYEHIIPKDSQSISIQGVV 177


>gi|227532834|ref|ZP_03962883.1| XRE family transcriptional regulator [Lactobacillus paracasei
          subsp. paracasei ATCC 25302]
 gi|227189538|gb|EEI69605.1| XRE family transcriptional regulator [Lactobacillus paracasei
          subsp. paracasei ATCC 25302]
          Length = 185

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+  S   +   + ++ +   +T S LA    +   + +  +    +     P  ++I +
Sbjct: 1  MSDLS---LGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQ-----PDLQTICR 52

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKE 89
          + +    T+  LL          ++    
Sbjct: 53 LASYYQLTVDDLLHQQSVPHADDQRAITW 81


>gi|297193564|ref|ZP_06910962.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718161|gb|EDY62069.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 151

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 7  MASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 61

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L             + +   ++
Sbjct: 62 VAKALRISAETLYVRAGILDEQERDELETRAVI 94


>gi|25011198|ref|NP_735593.1| hypothetical protein gbs1147 [Streptococcus agalactiae NEM316]
 gi|23095622|emb|CAD46806.1| unknown [Streptococcus agalactiae NEM316]
          Length = 65

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+ +  ++      + ++  L+   LA + G+   + +  +           ST++  K
Sbjct: 1  MTTITQNRV----KELRKQAGLSQQALADQIGVMRKTISHWELGN-----HRISTDNAKK 51

Query: 61 ILAATNETICQ 71
          +      +I  
Sbjct: 52 LSQFFQVSIDD 62


>gi|19551915|ref|NP_599917.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62389574|ref|YP_224976.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|41324909|emb|CAF19390.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 124

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 1/92 (1%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNETI 69
             + ++      +   LA  +G+   + +  +R    +G    P   +I+++  A +   
Sbjct: 15  SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 74

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
             L+             E     + +P     
Sbjct: 75  IALMPAGSVPVAKICVDETAAIDVRWPSEKDP 106


>gi|317501524|ref|ZP_07959721.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316897079|gb|EFV19153.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 211

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA   G++  S +K +R        +P+ +++ KI+     T
Sbjct: 11 LGENIQTIRKHRKMKQQELADAIGINMQSLSKIERGVN-----YPTFDTLEKIMDVLEVT 65

Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90
            +LL   +   +  EK+  + 
Sbjct: 66 PNELLSGEWKFVQQAEKEVNQF 87


>gi|310644825|ref|YP_003949584.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus
          polymyxa SC2]
 gi|309249776|gb|ADO59343.1| Predicted transcription factor,eukaryotic MBF1-like protein
          [Paenibacillus polymyxa SC2]
          Length = 114

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K+I   I  +     LT   LA  A LD       +R       R  S +++ K
Sbjct: 1  MAEL-RKQIGTRIRAIRNAKGLTQQKLADIASLDYRYIGALERGE-----RNFSIDTLEK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTE 84
          +L A N +I +L+           
Sbjct: 55 VLTALNVSISELMFSEEHMTTDEM 78


>gi|218663328|ref|ZP_03519258.1| probable transcriptional regulator protein, LacI family [Rhizobium
           etli IE4771]
          Length = 190

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 6/133 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I   I  +     LT   LA  +G+     ++ +R         P+   + +
Sbjct: 1   MEQQLEQAIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEA-----SPTASLLAR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVG 119
           I AA   ++               +++++                 +   P+      V 
Sbjct: 56  ICAALGLSLSAFFAEEGQQASPLARRQEQQVWRDPENRLHQAVGLGAPARPSDVDIVEVE 115

Query: 120 VPEIRSPHNGIYA 132
            P         +A
Sbjct: 116 FPAGARVSFPPHA 128


>gi|254388231|ref|ZP_05003467.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294817295|ref|ZP_06775937.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197701954|gb|EDY47766.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294322110|gb|EFG04245.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 389

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + +R  L+   LA+ +G+  +   K ++         P  E++ K+ +  +   
Sbjct: 6  GRKLKEVRKRRGLSQRDLAKASGVSLSLIRKLEQGDYG----TPMLETLRKLASVLDIPT 61

Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92
            L+     D  T    +    +
Sbjct: 62 MCLVGEDREDRATPMTTDLWQNV 84


>gi|146319181|ref|YP_001198893.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|146321385|ref|YP_001201096.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|253752226|ref|YP_003025367.1| DNA-binding phage protein [Streptococcus suis SC84]
 gi|253754052|ref|YP_003027193.1| DNA-binding phage protein [Streptococcus suis P1/7]
 gi|253755986|ref|YP_003029126.1| DNA-binding phage protein [Streptococcus suis BM407]
 gi|145689987|gb|ABP90493.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145692191|gb|ABP92696.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
 gi|251816515|emb|CAZ52151.1| putative DNA-binding phage protein [Streptococcus suis SC84]
 gi|251818450|emb|CAZ56279.1| putative DNA-binding phage protein [Streptococcus suis BM407]
 gi|251820298|emb|CAR46798.1| putative DNA-binding phage protein [Streptococcus suis P1/7]
 gi|292558817|gb|ADE31818.1| prophage Sa05, DNA-binding protein [Streptococcus suis GZ1]
 gi|319758615|gb|ADV70557.1| transcriptional regulator [Streptococcus suis JS14]
          Length = 173

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          +  + + +NLT   LA+K G++  +  K +        R  + E + K  
Sbjct: 4  LKTLRKENNLTQEELAKKIGVNLRTLQKWENGESS--IRTKNAEKLAKHF 51


>gi|254450110|ref|ZP_05063547.1| UmuD protein [Octadecabacter antarcticus 238]
 gi|198264516|gb|EDY88786.1| UmuD protein [Octadecabacter antarcticus 238]
          Length = 144

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNC 167
           FP+    +   + +   P   +    +     + +   +  +  R GDI+ ++ A +   
Sbjct: 28  FPSPAGDD---LEDEIDPIAWVVRHPSSTFWWRVEGDCLWDVGIRDGDIIAVDRAGKRRL 84

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN--CCYPVDTVEMSDIEW--IARIL 219
           G R ++    G + AK+L  R G    L   N    +P   +      W  IA ++
Sbjct: 85  G-RAVLAVVEGAVTAKILRKRNGN-FYLAPANTREAFPDIELNEDSEIWGVIAGVV 138


>gi|241207203|ref|YP_002978299.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861093|gb|ACS58760.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 188

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 14/136 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I   I  + +   LT   LA  +G+     ++ +R         P+   + +
Sbjct: 1   MEPELEQAIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEA-----SPTASLLAR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---- 116
           I AA   ++               ++E++            G+    V P G   +    
Sbjct: 56  ICAALGLSLSAFFAEDGQASPLARRQEQQ-----VWRDPETGYMRRSVSPPGTASDVDIV 110

Query: 117 TVGVPEIRSPHNGIYA 132
            V  P         +A
Sbjct: 111 EVEFPAGARVSFPPHA 126


>gi|157370727|ref|YP_001478716.1| XRE family transcriptional regulator [Serratia proteamaculans
          568]
 gi|157322491|gb|ABV41588.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 189

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           AI R  ER  L+ + LAR+AG+  ++ ++ +          PS E+++ +  A +  + 
Sbjct: 17 SAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGN-----PSLETLWALAMALDVPVS 71

Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92
          +L+  P    +     E    +
Sbjct: 72 RLISQPRQHVQVIRANEGVTTV 93


>gi|21323451|dbj|BAB98078.1| Predicted transcriptional regulators [Corynebacterium glutamicum
           ATCC 13032]
          Length = 128

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 1/92 (1%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNETI 69
             + ++      +   LA  +G+   + +  +R    +G    P   +I+++  A +   
Sbjct: 19  SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 78

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
             L+             E     + +P     
Sbjct: 79  IALMPAGSVPVAKICVDETAAIDVRWPSEKDP 110


>gi|326331894|ref|ZP_08198181.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325950391|gb|EGD42444.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 209

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 10/143 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T  +   +   + ++ +R ++T S LA + G+  ++ ++ +        R P+ E +  +
Sbjct: 5   TDRTLDAVGPRLKQLRQRRDITLSHLAEETGISTSTLSRLEAG-----LRRPTLEQLLPL 59

Query: 62  LAATNETICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             A   T+  L+D P +                 +L       G      V PTG     
Sbjct: 60  ARAYGVTLDDLVDAPPTGNPRINLRPIPCADGSMILPLTRRPGGIQAYKFVLPTGRDDAH 119

Query: 118 VGVPEIRSPHNGIYAIQTQDTRH 140
             +      ++ +Y +  +    
Sbjct: 120 PDL-RTHEGYDWVYVLNGRLRLV 141


>gi|317490116|ref|ZP_07948605.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA]
 gi|325833610|ref|ZP_08166059.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|316910821|gb|EFV32441.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA]
 gi|325485534|gb|EGC88003.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 380

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +    ++  L+   LA + G+   + +K +R         P T+++  +      
Sbjct: 4  EIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSES-----SPDTDNLIALAQLYGL 58

Query: 68 TICQLLDLPF 77
          ++  LL +  
Sbjct: 59 SLDDLLYVDE 68


>gi|271966776|ref|YP_003340972.1| XRE family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270509951|gb|ACZ88229.1| putative transcriptional regulator, XRE family [Streptosporangium
           roseum DSM 43021]
          Length = 198

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 10/167 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESIF 59
             ++ + + ++      +   LA++ G+  ++ ++ +R  I       G+       ++ 
Sbjct: 18  EARLADRLAQLRVERGWSLEELAQRTGVSRSTLSRLERMEISPTAAMLGKLCAAYGRTMS 77

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++LA       Q +          E        +  P  G  G    GV   G   +   
Sbjct: 78  QLLAEAEAEPPQTVRADRQVVWRDETSGFTRRSVSPPHPGLRGEIVEGVLRPGADISY-D 136

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            P +      I+ ++      +      +   R GD L      +  
Sbjct: 137 GPPVPGLEQHIWVLEG---VLEVTTGGGVHEIRAGDCLRFRLWDRSR 180


>gi|257792196|ref|YP_003182802.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476093|gb|ACV56413.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 380

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +    ++  L+   LA + G+   + +K +R         P T+++  +      
Sbjct: 4  EIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSES-----SPDTDNLIALAQLYGL 58

Query: 68 TICQLLDLPF 77
          ++  LL +  
Sbjct: 59 SLDDLLYVDE 68


>gi|219883177|ref|YP_002478339.1| prophage MuMc02, S24 family peptidase [Cyanothece sp. PCC 7425]
 gi|219867302|gb|ACL47640.1| prophage MuMc02, S24 family peptidase [Cyanothece sp. PCC 7425]
          Length = 51

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMS----DIEWIARILWA 221
           + K L  +    I + S +  Y    V ++    D   + R++W 
Sbjct: 1   MVKRLQRQPKGIIRVTSDDPAYDPFLVNLADESTDFAVLGRVVWI 45


>gi|261409127|ref|YP_003245368.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|329923481|ref|ZP_08278961.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
 gi|261285590|gb|ACX67561.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
 gi|328941241|gb|EGG37537.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
          Length = 122

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E I  + E+   T   LA   G+   + +  ++       R P  E++ ++    + +I
Sbjct: 4  GERIAELREQRGWTQEELATSVGITRAALSHYEKN-----RRKPDFETLTRLADLFDVSI 58

Query: 70 CQLLDLPFSDGRTTEKKEKEI 90
            L+     +    + + +  
Sbjct: 59 DYLIGRTTLEKSVLDPEVRSF 79


>gi|167749516|ref|ZP_02421643.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702]
 gi|167657544|gb|EDS01674.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702]
          Length = 159

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          E + ++ +   LT   LA   G+  +S+ K +R  I      PS E++ KI    +
Sbjct: 3  EQLQQLRKSRGLTQDDLAEILGISLSSYQKYERDAI-----SPSYETLCKIADFYH 53


>gi|15887370|ref|NP_353051.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|15154869|gb|AAK85836.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 121

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          EA+ ++ ER  +T   +A   G+ P   +  +     G+   PS + + +I    N    
Sbjct: 6  EAVRQLRERKGVTQKEMAAAIGVSPAYLSALE----HGKRGKPSFDLLQRIAGYFNIIWD 61

Query: 71 Q 71
          +
Sbjct: 62 E 62


>gi|70726855|ref|YP_253769.1| hypothetical protein SH1854 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68447579|dbj|BAE05163.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 179

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   +  +  + NLT   LA +  L     ++ +          PS E+   IL     
Sbjct: 2  QIGNKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHA-----SPSMETFLNILEVLGT 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          +          +     K E+ I   Y 
Sbjct: 57 SPSDFFKEKSKEKVLYTKNERTIYDEYD 84


>gi|88858937|ref|ZP_01133578.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2]
 gi|88819163|gb|EAR28977.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2]
          Length = 170

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 7/105 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I E +    ++  LT + LA K G+   +    +    + +        +  I  A  
Sbjct: 13  NTIGERVAAERKKLGLTQTALAEKVGVTQQAIGNIENNRSDSK-------RLADIAEALG 65

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            T   L     +          +  + Y   S +       + P+
Sbjct: 66  VTYTYLKTGNNTTIANHLSVVNDTNVNYNINSTATYDEIKDIVPS 110


>gi|229827219|ref|ZP_04453288.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC
           49176]
 gi|229788837|gb|EEP24951.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC
           49176]
          Length = 202

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 5/112 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I  + +   ++   LA K  +   + +K +          P  E +  +      
Sbjct: 2   NISERIQELRKAKGISQEELADKIDVSRQAVSKWENGQSI-----PDLEKVILLSEYFEV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           T   +L       +    K     +LY   +              +++  + 
Sbjct: 57  TTDYILKGIEPVKKNGTDKGLISKILYVIATFFTFTGLFTGIGRWHEYQRIE 108


>gi|312794244|ref|YP_004027167.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181384|gb|ADQ41554.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 66

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 8/64 (12%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + ++  L+   L++ A +  ++    +          P+ +++ K+  A    
Sbjct: 2  LGEKIKELRQKKGLSQQKLSKLANVPQSTIWYIENGIS-----SPTLKTLEKLARALEVP 56

Query: 69 ICQL 72
          + + 
Sbjct: 57 VHEF 60


>gi|229150033|ref|ZP_04278258.1| Transcriptional regulator, MerR [Bacillus cereus m1550]
 gi|228633471|gb|EEK90075.1| Transcriptional regulator, MerR [Bacillus cereus m1550]
          Length = 181

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|198244633|ref|YP_002215542.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|197939149|gb|ACH76482.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
          Length = 185

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 8  MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 61

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I    N      +  P ++   T   +++  ++
Sbjct: 62 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 94


>gi|218233568|ref|YP_002366514.1| DNA-binding protein [Bacillus cereus B4264]
 gi|218161525|gb|ACK61517.1| DNA-binding protein [Bacillus cereus B4264]
          Length = 181

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|254853777|ref|ZP_05243125.1| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|300765112|ref|ZP_07075099.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017]
 gi|258607157|gb|EEW19765.1| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|300514237|gb|EFK41297.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017]
          Length = 180

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 57/190 (30%), Gaps = 20/190 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2   EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T     D    + +    + +      F      G+    + P  N+     V      +
Sbjct: 57  TPKDFFDEEEHNQKVIYGELEHT----FFEDEEKGYRIKWLVPESNEKEMEPVLLEIEAN 112

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGDIVAKVLI 186
           +   + +           +   + +    ++L         G+ +             +I
Sbjct: 113 SCFKSFEPSL------SETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEH----QII 162

Query: 187 SRRGRSIDLM 196
           +R    + L+
Sbjct: 163 NRSNEQVTLI 172


>gi|254500680|ref|ZP_05112831.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222436751|gb|EEE43430.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 183

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 10/160 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESIFK 60
           + + + +  + +   L+   LA K+G+   + ++ +R          GR       S+  
Sbjct: 4   QDLAQRLIGLRKTKGLSLDELAEKSGISRATLSRIERGDTSPTAAALGRLATAFGVSVAD 63

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +           L           +   +   +    SG  G    G  P G   +    
Sbjct: 64  LFGLGAAAHDAKLAQNEQAVWRDPETGFQRRSVSPAISGFRGSVIEGTLPAGAIISYAAP 123

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
           P     H+ +                       GD L   
Sbjct: 124 PLPDLEHHLVLLSG----ALTVVLGDTRHDLSPGDCLRFR 159


>gi|15967045|ref|NP_387398.1| putative aldehyde dehydrogenase protein [Sinorhizobium meliloti
          1021]
 gi|307302508|ref|ZP_07582265.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
 gi|307316162|ref|ZP_07595606.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|17646727|gb|AAL41014.1|AF448466_4 putative aldehyde dehydrogenase [Sinorhizobium meliloti]
 gi|15076318|emb|CAC47871.1| Putative aldehyde dehydrogenase [Sinorhizobium meliloti 1021]
 gi|306898002|gb|EFN28744.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|306903178|gb|EFN33768.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
          Length = 182

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   + ++  RH L+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGSRLRQVRLRHKLSQRELAKRAGVTNSTISLIESNASN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLP 76
           + +     
Sbjct: 59 GLAEFFSFE 67


>gi|332654058|ref|ZP_08419802.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332517144|gb|EGJ46749.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 223

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                I + I  + +R  LT   LA++  +   + +  +          P  E++  I 
Sbjct: 1  MVMRLSIAKHIRSLRKRAGLTQEELAQRLYVTRQTVSLWELGKTR-----PDVETLQAIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKK 86
                + Q+L  P      +  +
Sbjct: 56 DCLGVDLLQVLYGPEQTAPQSTTR 79


>gi|328475511|gb|EGF46270.1| transcription regulator [Listeria monocytogenes 220]
          Length = 180

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +   ++ + 
Sbjct: 57 TPKDFFDEEEHNQKVIYRELEH 78


>gi|303229040|ref|ZP_07315846.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-134-V-Col7a]
 gi|302516251|gb|EFL58187.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-134-V-Col7a]
          Length = 91

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          A+ R  E   L+   LA ++G+  ++  + +R          S +++ KI  A N
Sbjct: 35 ALLRARENAGLSQRELAERSGVPQSTIARIERGYNT------SIDTLSKIAFALN 83


>gi|298386978|ref|ZP_06996532.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298260128|gb|EFI02998.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 236

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 55/210 (26%), Gaps = 23/210 (10%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA   G+   + +         RNR      + K+       +      P    +  E
Sbjct: 24  SELASYLGVSRATLSNWC-----ARNRIDFHLLLNKMRDVDLNWLLVGKGTPRHQAKFCE 78

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY-------AIQTQD 137
                  +       +    D       +      +  + +             +I   D
Sbjct: 79  SDLASGEVQMIHNPKTVEALDDRSVALYDITAAANLKTLLTNKRQYMVGKIQIPSIPLCD 138

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV--------AKVLIS-R 188
                   SM P+ + GDI+          G+ +  +                K +    
Sbjct: 139 GAVYISGDSMYPILKSGDIVGFKEINSF--GNLIYGEMYLVSFTIEGDEYLAVKYVNRSE 196

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           +   + L+S N  +    +  S I  +A +
Sbjct: 197 KEGYLKLVSYNAHHDPMDIPFSTINAMAIV 226


>gi|294813464|ref|ZP_06772107.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus
          ATCC 27064]
 gi|294326063|gb|EFG07706.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus
          ATCC 27064]
          Length = 457

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          ++I + I R      L+   LA KAGL  ++  K+++     R +   T
Sbjct: 40 QEIGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHT 88


>gi|153208917|ref|ZP_01947136.1| DNA-binding protein/cupin domain protein [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165923365|ref|ZP_02219702.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA
           334]
 gi|212218472|ref|YP_002305259.1| transcriptional regulator [Coxiella burnetii CbuK_Q154]
 gi|120575638|gb|EAX32262.1| DNA-binding protein/cupin domain protein [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165916691|gb|EDR35295.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA
           334]
 gi|212012734|gb|ACJ20114.1| transcriptional regulator [Coxiella burnetii CbuK_Q154]
          Length = 183

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +   ++   LA  AG+  +   K +   ++     P+ +   K+  A  +T+ 
Sbjct: 6   ERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQ-----PTLDVAGKLAVALGKTLS 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPE--IRSP 126
           ++L  P +    +  +        +  + +    +      G+K     V  P     + 
Sbjct: 61  EMLHSPQT---PSVIQLTTEEQAIWIDAQNIKRRNISPILEGSKVEWLFVEFPPGASLTK 117

Query: 127 HNGIYAIQTQDTRHKTQD 144
               Y  +T+     T+ 
Sbjct: 118 PLTPYTPETEKYILITKG 135


>gi|154707262|ref|YP_001424459.1| transcriptional regulator [Coxiella burnetii Dugway 5J108-111]
 gi|154356548|gb|ABS78010.1| transcriptional regulator [Coxiella burnetii Dugway 5J108-111]
          Length = 183

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R+ +   ++   LA  AG+  +   K +   ++     P+ +   K+  A  +T+ 
Sbjct: 6   ERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQ-----PTLDVAGKLAVALGKTLS 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT--VGVPE--IRSP 126
           ++L  P +    +  +        +  + +    +      G+K     V  P     + 
Sbjct: 61  EMLHSPQT---PSVIQLTTEEQAIWIDAQNIKRRNISPILEGSKVEWLFVEFPPGASLTK 117

Query: 127 HNGIYAIQTQDTRHKTQD 144
               Y  +T+     T+ 
Sbjct: 118 PLTPYTPETEKYILITKG 135


>gi|309777433|ref|ZP_07672391.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308914829|gb|EFP60611.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 83

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          I   +  + ++  LT + LA    +D T+ +  +R   + R R 
Sbjct: 5  IGMMLRELRKKRGLTQAQLAMMLKVDQTAVSMWERGITQPRMRK 48


>gi|241113139|ref|YP_002972974.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240861347|gb|ACS59013.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 182

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +   H L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGNRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         R   
Sbjct: 59 GLAEFFAFEPERPRKAF 75


>gi|149916993|ref|ZP_01905494.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149822271|gb|EDM81662.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 115

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 2  TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           +   KK++   + R+     LT   LA ++ L   +  + +     G    PS E++ K
Sbjct: 8  PALDRKKLFAKRLRRLRANLGLTQEELAERSELSADTIRRLE-----GSKFNPSLETLHK 62

Query: 61 ILAATNET 68
          I A    +
Sbjct: 63 IAAGLEMS 70


>gi|218463233|ref|ZP_03503324.1| putative phage-related transcriptional regulator protein [Rhizobium
           etli Kim 5]
          Length = 30

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 196 MSLNCCYPVDTVEMSDIEWIARILWASQ 223
           MSLN  +   T+++SD+EWIARI+WASQ
Sbjct: 3   MSLNPEHANRTLDLSDVEWIARIIWASQ 30


>gi|206971646|ref|ZP_03232596.1| transcriptional regulator Xre [Bacillus cereus AH1134]
 gi|206733631|gb|EDZ50803.1| transcriptional regulator Xre [Bacillus cereus AH1134]
          Length = 117

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           FSH++    +  + E+  +T   LA   G+   S             + P T ++ KI 
Sbjct: 1  MFSHQR----LKLLIEKRGITQQQLADAIGVSHVSVYNYVEG-----KKSPGTRTLQKIA 51

Query: 63 AATN 66
             N
Sbjct: 52 NHLN 55


>gi|282882924|ref|ZP_06291529.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B]
 gi|300814135|ref|ZP_07094418.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|281297335|gb|EFA89826.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B]
 gi|300511792|gb|EFK39009.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 179

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 20/192 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  +     LT   LA ++ L     ++ +R         PS +S+  IL A   
Sbjct: 2   EIGNKIKELRVASGLTQEELATRSELTKGFISQIERDLT-----SPSVDSLLDILEALGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  +            E+        +   +   GFF   + P  N    +  P + S  
Sbjct: 57  SPSEFFSKD-----KNERIIFSEDDYFEYENEDLGFFLQWIVP--NAQKNMMEPTLISLK 109

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVL 185
            G  + +      +                  +   ++  G     + +    +   K  
Sbjct: 110 EGGKSKKIAPFEGEVFGYVEKGSICLH---YGDKIFELKSGQTFYFEAKREHFLVNNK-- 164

Query: 186 ISRRGRSIDLMS 197
             R  + I + S
Sbjct: 165 -KREAKVIWISS 175


>gi|169349646|ref|ZP_02866584.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM
          1552]
 gi|169293721|gb|EDS75854.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM
          1552]
          Length = 211

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            SH  +   I  + +   +    LA K G++  S +K +R        +P+ E++ KI+
Sbjct: 7  KISH--LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLN-----YPAYETLEKIM 59

Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87
             + T  +LL   +     +EK+ 
Sbjct: 60 EVLDVTPNELLSGEWKYVNQSEKEV 84


>gi|153008873|ref|YP_001370088.1| helix-turn-helix domain-containing protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560761|gb|ABS14259.1| helix-turn-helix domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 230

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 66/226 (29%), Gaps = 20/226 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S+  +   I+       ++P  LA+ AGL+    N        GR +    + +  + 
Sbjct: 1   MSSNDSLRSRIEERVNTLGISPITLAKSAGLERGYINDLL----IGRKKSIRGDKLNIVA 56

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A       LL       +    ++ E   +    +G           +G        P 
Sbjct: 57  KALQCDPEYLLLEQDEVRKHKVIEKIEFGGVC--EAGVWRSASLSNQNSGKSVPIEPDPR 114

Query: 123 IRSPHNGIYAIQTQDTRHKT--QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--- 177
                N  + ++      +      ++  +        +        G  ++        
Sbjct: 115 FPHLRNIAFDVRGNSFAAEGISDGMTVAGIALDEWTQTIGPLST---GMIVVAHANRADG 171

Query: 178 --GDIVAKVLISRRGR-SIDLMSLNC--CYPVDTVEMSDIEWIARI 218
              ++  + +  +    S+ +   +    +P   V  +D++ +A I
Sbjct: 172 SEFELSLRRVSVKPNGISLSVRPTDPTLEFPSIDV-GNDVKIVAVI 216


>gi|157373772|ref|YP_001472372.1| DNA-binding protein [Shewanella sediminis HAW-EB3]
 gi|157316146|gb|ABV35244.1| DNA-binding protein [Shewanella sediminis HAW-EB3]
          Length = 181

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 12/147 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+  +H LT   LA  AG+   +    +     G N  PS   + K+  A   T
Sbjct: 5   INEGIKRLRAQHKLTQIELAEMAGIPRATLANME-----GANSNPSISVVMKVAQALGVT 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP------- 121
           +  L+    S   T  +++                            + + +P       
Sbjct: 60  VDDLITRRQSVHVTKVERKDMPVSHQHDGKFISTRTSPISTQNLQINDVIMMPGCNTKGV 119

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML 148
                 + ++         + Q     
Sbjct: 120 PHPEGSHELFLCLEGTATLEVQGEMFE 146


>gi|91783413|ref|YP_558619.1| XRE family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687367|gb|ABE30567.1| Predicted transcriptional regulator, XRE family [Burkholderia
           xenovorans LB400]
          Length = 152

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I  AI    +   +T   L+    ++ +S ++ +R  +      PS E +  I       
Sbjct: 33  IGAAIAARRKALGMTQERLSELIQIEQSSLSRIERGTLI-----PSLERLASIAEELECG 87

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           +  L  +   +      +  E      P    
Sbjct: 88  LADLFYVGGVNSHDRAARVHEKLSHLTPSQQE 119


>gi|313680009|ref|YP_004057748.1| XRE family transcriptional regulator [Oceanithermus profundus DSM
          14977]
 gi|313152724|gb|ADR36575.1| transcriptional regulator, XRE family [Oceanithermus profundus
          DSM 14977]
          Length = 71

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +      + + LA + G+   + N  ++   +     PS    FKI A     I 
Sbjct: 3  NRLPVLRAERGWSQAALAERLGVSRQTVNAIEKGRYD-----PSLPLAFKIAAVFGLAIE 57

Query: 71 QLLDLPF 77
           + +   
Sbjct: 58 DVFEPEE 64


>gi|260589352|ref|ZP_05855265.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
           hansenii DSM 20583]
 gi|260540433|gb|EEX21002.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
           hansenii DSM 20583]
          Length = 203

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 6/115 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              + +I   I    +   +  + LA   G    +  K +   IE      S   + +I 
Sbjct: 6   KLHNNQIGLRIRTARKEKGINQTELANLLGKSLRTIQKYESGEIE-----VSIAMLNEIA 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWN 116
              +     L+             +    L         GF      P   + W 
Sbjct: 61  KVLDCESTYLIGYDAERKPLENLSDIMNFLFQLDKIKELGFNIEVKRPPHYDGWE 115


>gi|225405526|ref|ZP_03760715.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme
           DSM 15981]
 gi|225042938|gb|EEG53184.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme
           DSM 15981]
          Length = 257

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+FS + I     ++ ++  L+   L    G+   + +K +          P    + +
Sbjct: 6   MTAFSEQLI-----KLRKQKGLSQEQLGAAVGVTRQTVSKWELGDTT-----PELGKLVQ 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
           +      +I +L+     +      +    P ++     S   + 
Sbjct: 56  LSDYFQLSIDELVGHAAENDGDRTVELNGAPAVWHYEYKSKRTWF 100


>gi|239814987|ref|YP_002943897.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801564|gb|ACS18631.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 190

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S S  +I   +  +     ++   LA+ +G+  +  ++ +R  +      PS E++ +
Sbjct: 1  MRSLSAARIGAQVRALRMAAEVSGGELAKTSGISASMLSRIERGLV-----SPSVETLER 55

Query: 61 ILAATN 66
          +    +
Sbjct: 56 LAQGLH 61


>gi|168819389|ref|ZP_02831389.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205343670|gb|EDZ30434.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|320085906|emb|CBY95680.1| Uncharacterized HTH-type transcriptional regulator ydcN
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
          Length = 178

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1  MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I    N      +  P ++   T   +++  ++
Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 87


>gi|330835893|ref|YP_004410621.1| XRE family transcriptional regulator [Metallosphaera cuprina Ar-4]
 gi|329568032|gb|AEB96137.1| XRE family transcriptional regulator [Metallosphaera cuprina Ar-4]
          Length = 184

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 5/102 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +M E   LT S LA++ G+  +   K ++  ++     P    + +I+   +  I   
Sbjct: 8   LRKMRESAGLTQSELAKRVGVSQSYIAKIEKGSVD-----PRLSIVRRIMDELSPLIEIP 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                         + +  L                  T   
Sbjct: 63  EIALSLMHSPVISVKTDARLKDIADIMEVNNISQVPVITSEG 104


>gi|297156604|gb|ADI06316.1| UDP-N-acetylglucosamine transferase [Streptomyces bingchenggensis
          BCW-1]
          Length = 509

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA       ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQAQLAEALNTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|227512461|ref|ZP_03942510.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
 gi|227084286|gb|EEI19598.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
          Length = 131

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S   + + E I  + +R   + + +A+K G+D T+F+K K        R  S + + K
Sbjct: 1  MASRLEQSLAERIAYLQDRSQFSQADIAKKMGIDRTAFSKIKNGT-----RKVSADELNK 55

Query: 61 ILAATNET 68
          +      +
Sbjct: 56 LSEIFGVS 63


>gi|319939789|ref|ZP_08014145.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus
          1_2_62CV]
 gi|319811002|gb|EFW07317.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus
          1_2_62CV]
          Length = 133

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             + +   I  + +   +T   LA K G+   + +K +R        +P   +I K+  
Sbjct: 1  MKKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLS-----YPDINTIPKLAD 55

Query: 64 ATNETICQLLDLPFSDGRTTEKK 86
            + ++ +L+          + +
Sbjct: 56 LFDTSVDELMQGQTVMKENKKNR 78


>gi|315222450|ref|ZP_07864351.1| helix-turn-helix protein [Streptococcus anginosus F0211]
 gi|315188474|gb|EFU22188.1| helix-turn-helix protein [Streptococcus anginosus F0211]
          Length = 133

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             + +   I  + +   +T   LA K G+   + +K +R        +P   +I K+  
Sbjct: 1  MKKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLS-----YPDINTIPKLAD 55

Query: 64 ATNETICQLLDLPFSDGRTTEKK 86
            + ++ +L+          + +
Sbjct: 56 LFDTSVDELMQGQTVMKENKKNR 78


>gi|282916348|ref|ZP_06324110.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139]
 gi|282319788|gb|EFB50136.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139]
          Length = 179

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 35/197 (17%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +    NLT   LA +  L     ++ +          PS E+   I+     
Sbjct: 2   NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126
           T  +      ++    +K+E+ I   Y       G+  + +    N+++   +     P 
Sbjct: 57  TPSEFFKDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111

Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183
             +      ++    +                      I +N G  +        +  K 
Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEVYQAQEEDVLYFKA 154

Query: 184 ----VLISRRGRSIDLM 196
                L +       ++
Sbjct: 155 LDNHRLSNESNNETRIL 171


>gi|138896497|ref|YP_001126950.1| immunity repressor protein, phage-like protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268010|gb|ABO68205.1| Immunity repressor protein, phage-related protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 156

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 4/113 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               K+    I ++ E+   T + L+  +G+     ++ +          P  E+I K+ 
Sbjct: 1   MTKAKQFGSYIRQLREKKGYTVNQLSLYSGVSSAQISRIENGLRG----VPKPETIKKLS 56

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            A   +   L+          + K  E+                    TG+ +
Sbjct: 57  EALGHSYEDLMQAAGYLDDNAQPKLPELTEKDERDIQKELERLIRGLKTGSGF 109


>gi|49483261|ref|YP_040485.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425150|ref|ZP_05601576.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427813|ref|ZP_05604211.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430448|ref|ZP_05606830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433150|ref|ZP_05609508.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436049|ref|ZP_05612096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903647|ref|ZP_06311535.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905416|ref|ZP_06313271.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908388|ref|ZP_06316219.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910675|ref|ZP_06318478.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913873|ref|ZP_06321660.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282918797|ref|ZP_06326532.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427]
 gi|282923919|ref|ZP_06331595.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101]
 gi|283770160|ref|ZP_06343052.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19]
 gi|283957842|ref|ZP_06375293.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293500910|ref|ZP_06666761.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509866|ref|ZP_06668575.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809]
 gi|293526452|ref|ZP_06671137.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295427586|ref|ZP_06820218.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591460|ref|ZP_06950098.1| cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49241390|emb|CAG40074.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272126|gb|EEV04258.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274654|gb|EEV06141.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278576|gb|EEV09195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281243|gb|EEV11380.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284331|gb|EEV14451.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313891|gb|EFB44283.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101]
 gi|282316607|gb|EFB46981.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427]
 gi|282321941|gb|EFB52265.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325280|gb|EFB55589.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328053|gb|EFB58335.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330708|gb|EFB60222.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595265|gb|EFC00229.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus C160]
 gi|283460307|gb|EFC07397.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19]
 gi|283470309|emb|CAQ49520.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283789991|gb|EFC28808.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920524|gb|EFD97587.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095915|gb|EFE26176.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467316|gb|EFF09833.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809]
 gi|295127944|gb|EFG57578.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576346|gb|EFH95062.1| cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312438525|gb|ADQ77596.1| cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315193766|gb|EFU24161.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 179

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 35/197 (17%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +    NLT   LA +  L     ++ +          PS E+   I+     
Sbjct: 2   NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126
           T  +      ++    +K+E+ I   Y       G+  + +    N+++   +     P 
Sbjct: 57  TPSEFFKDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111

Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183
             +      ++    +                      I +N G  +        +  K 
Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEVYQAQEEDVLYFKA 154

Query: 184 ----VLISRRGRSIDLM 196
                L +       ++
Sbjct: 155 RDNHRLSNESNNETRIL 171


>gi|69246753|ref|ZP_00604101.1| Peptidase S24, S26A and S26B [Enterococcus faecium DO]
 gi|314938028|ref|ZP_07845338.1| signal peptidase I [Enterococcus faecium TX0133a04]
 gi|314941986|ref|ZP_07848847.1| signal peptidase I [Enterococcus faecium TX0133C]
 gi|314948761|ref|ZP_07852133.1| signal peptidase I [Enterococcus faecium TX0082]
 gi|314951779|ref|ZP_07854818.1| signal peptidase I [Enterococcus faecium TX0133A]
 gi|314991814|ref|ZP_07857272.1| signal peptidase I [Enterococcus faecium TX0133B]
 gi|314995855|ref|ZP_07860942.1| signal peptidase I [Enterococcus faecium TX0133a01]
 gi|68195107|gb|EAN09567.1| Peptidase S24, S26A and S26B [Enterococcus faecium DO]
 gi|313589959|gb|EFR68804.1| signal peptidase I [Enterococcus faecium TX0133a01]
 gi|313593625|gb|EFR72470.1| signal peptidase I [Enterococcus faecium TX0133B]
 gi|313596058|gb|EFR74903.1| signal peptidase I [Enterococcus faecium TX0133A]
 gi|313599238|gb|EFR78083.1| signal peptidase I [Enterococcus faecium TX0133C]
 gi|313642603|gb|EFS07183.1| signal peptidase I [Enterococcus faecium TX0133a04]
 gi|313644827|gb|EFS09407.1| signal peptidase I [Enterococcus faecium TX0082]
          Length = 157

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
              +  SM  + ++GD++++    ++   D ++ +   G I  K +I   G         
Sbjct: 10  VPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIKRVIGLPG--------- 60

Query: 200 CCYPVDTVEMSDIEWIARIL 219
                 + +   ++   +++
Sbjct: 61  ---ENVSYQNDQLKINGKVV 77


>gi|330467102|ref|YP_004404845.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328810073|gb|AEB44245.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 476

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          + R+   H LT + LAR+  +  +  N+ +    +     P    + K+L    E    
Sbjct: 13 LRRLRREHGLTQAELARRLDISTSYLNQIEN--SQRTLTAPILLRLAKVLGVDPEHFAD 69


>gi|319948667|ref|ZP_08022789.1| transcriptional regulator [Dietzia cinnamea P4]
 gi|319437649|gb|EFV92647.1| transcriptional regulator [Dietzia cinnamea P4]
          Length = 176

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   I    E   ++   LA +AG+     ++ +R       R PS E + +I     
Sbjct: 61  QDIGSFIRAQREAAQVSIRQLAERAGVSNPYLSQIERG-----LRKPSAEVLGQIARGLR 115

Query: 67  ETICQLLDLPFSDGRTTEKKEK 88
            +   L               +
Sbjct: 116 LSAEVLYARAGILELKQGSPVR 137


>gi|311278398|ref|YP_003940629.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
          SCF1]
 gi|308747593|gb|ADO47345.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 83

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K + E I  +     L+    A K G+D T  +  +R       R P+   I  I     
Sbjct: 9  KILGERIRTLRLDMGLSQEAFADKCGIDRTYMSGIERGV-----RNPTLIVICAISDGLE 63

Query: 67 ETICQLLDLPFSDGRTTEKK 86
            +  L           E  
Sbjct: 64 MDLSHLFMFADGAHADNEAP 83


>gi|307324310|ref|ZP_07603518.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu
          4113]
 gi|306890041|gb|EFN21019.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu
          4113]
          Length = 279

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +I   +  + ER  LT   +A +AG+  T+ ++ + +    R RW + +++     
Sbjct: 2  QIARGLISLRERCGLTQVQVAERAGVSKTTVSRYEMWQDRARIRWATVKALADACE 57


>gi|221195133|ref|ZP_03568189.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626]
 gi|221185036|gb|EEE17427.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626]
          Length = 244

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 5/113 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S + +   I R+      T   LAR+  + P + +K +         +P    + ++   
Sbjct: 4   SQETLGRRIARLRLAKAATQERLARELSVSPQAVSKWENDIN-----YPDISLLPQLAQF 58

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
              +I +LL    +  R        I       S             GN    
Sbjct: 59  LGVSIDELLRGASTQERKGLDVSMSITKEADESSDKREAGKEQNLAIGNFAEE 111


>gi|116250024|ref|YP_765862.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254672|emb|CAK05746.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 192

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 6/132 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     + I   I  + +   LT   LA  +G+     ++ +R         P+   + +
Sbjct: 5   MEPELEQAIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEA-----SPTASLLAR 59

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I AA   ++               +++++                    P+      V  
Sbjct: 60  ICAALGLSLS-AFFAEEGQASPLARRQEQQVWRDPETGYIRRSVSPPGTPSDVDIVEVEF 118

Query: 121 PEIRSPHNGIYA 132
           P         +A
Sbjct: 119 PPGARVSFPPHA 130


>gi|309795403|ref|ZP_07689821.1| bacteriophage CI repressor protein [Escherichia coli MS 145-7]
 gi|308121053|gb|EFO58315.1| bacteriophage CI repressor protein [Escherichia coli MS 145-7]
          Length = 189

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 54/210 (25%), Gaps = 40/210 (19%)

Query: 12  AIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           AI+RM E +   T   L    G+  ++   +  R            E + +    T  ++
Sbjct: 10  AIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSL 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L     S   +      E+                     G           +     
Sbjct: 63  NWLTTGHGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPS 108

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +              +        +         +  G  ++     G+I  + +    
Sbjct: 109 TFKKP------FVITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRLP 154

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           G  I +   N  +     ++ D+E I +I+
Sbjct: 155 GGRIFVEGGNRTF---ECKIEDVEIIGKII 181


>gi|163816452|ref|ZP_02207816.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC
          27759]
 gi|158448152|gb|EDP25147.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC
          27759]
          Length = 268

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I    ++ N++    A K G+   + +K +         +P  + +  I      
Sbjct: 3  QIGSRILEYRKKMNMSQEEFANKIGVSRQAVSKWELDKA-----YPDLDKLVDICGMFGL 57

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          ++ +L++    D     + E+ + +   P
Sbjct: 58 SLDELVNGVEQDEEPVMEAEQRVEIPNDP 86


>gi|83311163|ref|YP_421427.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82946004|dbj|BAE50868.1| Predicted transcriptional regulator [Magnetospirillum magneticum
          AMB-1]
          Length = 93

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E + R  +R  L+ + LA+K G   +   + +          PS+ S+ +  AAT  
Sbjct: 29 EIAETLIRARQRAGLSQAELAKKMGTTQSVVARLESGRS-----LPSSTSLARFAAATGS 83

Query: 68 TIC 70
           + 
Sbjct: 84 RLH 86


>gi|320140814|gb|EFW32662.1| toxin-antitoxin system, antitoxin component, Xre family
          [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142985|gb|EFW34777.1| toxin-antitoxin system, antitoxin component, Xre family
          [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 136

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 21/45 (46%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            ++ +I   I    +  N++ S LAR+ G+  ++ ++      E
Sbjct: 27 MRTNDEIITIIKTSMKEQNMSLSELARRVGVAKSAVSRYLNLTRE 71


>gi|297624714|ref|YP_003706148.1| XRE family transcriptional regulator [Truepera radiovictrix DSM
          17093]
 gi|297165894|gb|ADI15605.1| transcriptional regulator, XRE family [Truepera radiovictrix DSM
          17093]
          Length = 93

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 6/65 (9%)

Query: 3  SFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            + K  I+  +  +     L+   LA   G++  +    +R         PS E  F+ 
Sbjct: 1  MPTQKTTIYNRLAVLRAERGLSRQALADAVGVNYQTIGYLERGDYN-----PSLELAFRF 55

Query: 62 LAATN 66
               
Sbjct: 56 AKLFG 60


>gi|302873538|ref|YP_003842171.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
 gi|307688282|ref|ZP_07630728.1| transcriptional regulator, XRE family protein [Clostridium
          cellulovorans 743B]
 gi|302576395|gb|ADL50407.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
          Length = 296

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +  +   I  + + +  T   L+   G+  T+    ++       R P TE + K+    
Sbjct: 2  NNSLANRIKDLRKNNGYTQKELSSLLGIGQTTVANYEQGT-----RIPDTEKLNKMADLF 56

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
            T+  LL        + ++ + +   L    
Sbjct: 57 EVTLDYLLGRNEKISPSNKEVKSKTIDLKSAN 88


>gi|218670812|ref|ZP_03520483.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 96

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +   H L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         +   
Sbjct: 59 GLAEFFAFEPERPKKAF 75


>gi|213966012|ref|ZP_03394201.1| DNA-binding protein [Corynebacterium amycolatum SK46]
 gi|213951307|gb|EEB62700.1| DNA-binding protein [Corynebacterium amycolatum SK46]
          Length = 478

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 33/131 (25%), Gaps = 5/131 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           S S   +   + ++    +L+ + LA+  GL  +  N+ +        R  +   + +I 
Sbjct: 4   SMSKTYVGSRLRQLRRERDLSQAALAQALGLSASYVNQIEHDV-----RPLTVPVLLRIT 58

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                          S      +       +   P       +            V +  
Sbjct: 59  DTFGVDATFFSRDDDSRLLAEVQDVVMDKEIAKSPMDLQEISEMVRDHPDIARIMVDIHR 118

Query: 123 IRSPHNGIYAI 133
                    ++
Sbjct: 119 RYRNVTDKLSL 129


>gi|149916994|ref|ZP_01905495.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149822272|gb|EDM81663.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 130

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + + E +        L+   LA++AG+   + +K +   +      PS +++ KI A  
Sbjct: 7  RESLAEVVRGRRAELGLSQRELAKRAGVADATISKLETQQL-----SPSLDTLAKIAAGL 61


>gi|325961967|ref|YP_004239873.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468054|gb|ADX71739.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 191

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 10/135 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +      T S LA   G+  ++ ++ +        R P+ E +  +  A    
Sbjct: 12  VGPRLRALRLSRETTLSALAEATGISVSTLSRLESGQ-----RRPNLELLLPLAKAHQVP 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + +L+  P +       +  E     ++       G      + P G        P++  
Sbjct: 67  LDELVGAPATGDPRVHLRPIEAHGMTIVPLTRKPGGIQAYKHILPAGPLEE--PDPKVHE 124

Query: 126 PHNGIYAIQTQDTRH 140
            +  +Y +  +    
Sbjct: 125 GYEWLYVLNGKLRMV 139


>gi|310640587|ref|YP_003945345.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus
          polymyxa SC2]
 gi|309245537|gb|ADO55104.1| Predicted transcription factor,eukaryotic MBF1-like protein
          [Paenibacillus polymyxa SC2]
          Length = 115

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+    + +   I  + +   L+   LA +AG + +     +R       R  S +++ K
Sbjct: 1  MSELL-ELVGTRIRDIRKSKGLSQEALAEQAGFNSSYIGFIERAE-----RNISLKNLEK 54

Query: 61 ILAATNETICQ 71
          I  A N  + Q
Sbjct: 55 IAKALNVGVYQ 65


>gi|226325758|ref|ZP_03801276.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758]
 gi|225205882|gb|EEG88236.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758]
          Length = 319

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI E +  + +   LT   LA    +   + ++ +          P    + K+    N
Sbjct: 4  KKIGEFLKVLRKERGLTQEQLAEILLVSGRTISRWETGTN-----MPDLSILIKMAEFYN 58

Query: 67 ETICQ 71
            + +
Sbjct: 59 VEVKE 63


>gi|225390137|ref|ZP_03759861.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme
          DSM 15981]
 gi|225043790|gb|EEG54036.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme
          DSM 15981]
          Length = 194

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI + I  + +   LT   LA    +   + +K +R        +P    + ++      
Sbjct: 5  KIGKLIRALRKDQGLTQRQLAAAMNISEQAVSKWERGLG-----FPDVSLLPELSEVLGV 59

Query: 68 TI 69
          + 
Sbjct: 60 SP 61


>gi|153839842|ref|ZP_01992509.1| LexA repressor [Vibrio parahaemolyticus AQ3810]
 gi|149746637|gb|EDM57625.1| LexA repressor [Vibrio parahaemolyticus AQ3810]
          Length = 154

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 32/181 (17%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTP--SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   +++++ I    +   + P  + +AR+ G                R+   + E
Sbjct: 1   MKPLTPRQQQVFDLIKSKIDDTGMPPTRAEIARELGF---------------RSANAAEE 45

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  +                +             LL    +   G    G    G    
Sbjct: 46  HLKALAR------------KQAIEIIPGASRGIRILLEDAANDEQGLPLIGQVAAGEPIL 93

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
                E     +        D   +    SM  +    GD+L ++    V  G  ++ + 
Sbjct: 94  AQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVVVARV 153

Query: 176 R 176
            
Sbjct: 154 D 154


>gi|89096956|ref|ZP_01169847.1| dna-binding protein [Bacillus sp. NRRL B-14911]
 gi|89088336|gb|EAR67446.1| dna-binding protein [Bacillus sp. NRRL B-14911]
          Length = 69

 Score = 48.6 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + +   L+   LA+  G+   + N  +    +     PS    F++  +   T+ QL
Sbjct: 5  IKEVRKSSGLSQEELAKACGVSRQTINAIENNKYD-----PSLALAFQLAESLGMTVDQL 59

Query: 73 LDLPFS 78
                
Sbjct: 60 FHFRSR 65


>gi|323357780|ref|YP_004224176.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323274151|dbj|BAJ74296.1| predicted transcriptional regulator [Microbacterium testaceum
           StLB037]
          Length = 211

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 41/145 (28%), Gaps = 13/145 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +   ++   LA   G+ P++ ++ +R  ++     PS   +  I  A    
Sbjct: 27  VGARIRDLRQARGISARALAATLGISPSAVSQIERGVMQ-----PSVSRLIAITDALGVP 81

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG----SGGFFDSGVFPTGNKWNTVG--VPE 122
           +    D                       +     SG  F      +    +      P 
Sbjct: 82  LVAAFDPASDRPVEPVGPSGFTLQRAAQAADIVLESGVSFRRLTPGSSPGVDYFESVYPP 141

Query: 123 IRSPH--NGIYAIQTQDTRHKTQDT 145
             S H  +G++  +  +        
Sbjct: 142 GASAHGADGLFHHEGYEVGTVVAGE 166


>gi|296877340|ref|ZP_06901380.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|296431860|gb|EFH17667.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
          Length = 113

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + ++ +LT   LA++ G+  +S+   +R       + P+ E++ ++    N +
Sbjct: 5  ERLKELRKQAHLTQVELAKQLGIGQSSYADWERG-----KKNPTQENLIRLAQILNVS 57


>gi|217967677|ref|YP_002353183.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM
          6724]
 gi|217336776|gb|ACK42569.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM
          6724]
          Length = 110

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I E +  + E+  LT   LA K G+ P++  + +  G     R P    + +I    +
Sbjct: 8  KIISERLKEVREKRGLTKKELALKIGVSPSTITRYEEEG-----RVPKLTILKRISEVLD 62

Query: 67 ET 68
           +
Sbjct: 63 VS 64


>gi|168260202|ref|ZP_02682175.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|205350640|gb|EDZ37271.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|326623288|gb|EGE29633.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
          Length = 178

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1  MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I    N      +  P ++   T   +++  ++
Sbjct: 55 IATGLNVPFSMFISPPQAEFPPTFDPQQQAMVI 87


>gi|15614006|ref|NP_242309.1| transcriptional regulator [Bacillus halodurans C-125]
 gi|10174060|dbj|BAB05162.1| transcriptional regulator [Bacillus halodurans C-125]
          Length = 107

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  + ++H LT   L +K  +  ++ +  +        R P  +++ K+    N +  
Sbjct: 4   ERLRYLRKKHGLTMKELGKKINVAESTISGYENGN-----RKPDMDTLVKMAEYFNSSTD 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            LL          ++  ++  L     +     F       
Sbjct: 59  YLLGRTEEPAPYQKQPPEKQFLYSETVTDEEVEFLRESLAV 99


>gi|145220707|ref|YP_001131385.1| XRE family transcriptional regulator [Mycobacterium gilvum
          PYR-GCK]
 gi|315442341|ref|YP_004075220.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
 gi|145213193|gb|ABP42597.1| transcriptional regulator, XRE family [Mycobacterium gilvum
          PYR-GCK]
 gi|315260644|gb|ADT97385.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
          Length = 182

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I   I    E   ++   LA KAG+     ++ +R       R PS + + +I  A  
Sbjct: 19 QDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRKPSADVLNQIAKALR 73

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL 92
           +   L             + ++  +
Sbjct: 74 VSAEVLYIQAGILEPGDTNEVRDAII 99


>gi|302672095|ref|YP_003832055.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302396568|gb|ADL35473.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 346

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/176 (9%), Positives = 39/176 (22%), Gaps = 19/176 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +     + N++   LA   G+   + +  +        R P  E I K+       + 
Sbjct: 4   KNLKYYRLKKNMSMKDLADAVGVTSMAISNYESG-----KRQPEIEIINKMAEVLGIKVV 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
             L    S       + ++   L               F             +       
Sbjct: 59  DFLASRNSHLEIKHCEFRKHSTLTKTQQEFIRESVEEYFS-------RFFDALDCLCGDP 111

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-------NCGDRLLIKPRTGD 179
                +    +   +         + L L     +            ++ +    D
Sbjct: 112 LPTPPKCYTLELSGSYQQDALNLREHLGLPKEGPIDELIGILENKGIIVFELDIDD 167


>gi|284992987|ref|YP_003411541.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM
           43160]
 gi|284066232|gb|ADB77170.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
           DSM 43160]
          Length = 170

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++ E I        ++   LAR AG+     ++ +R       R PS E +  I   
Sbjct: 40  TGSQVGEFIREQRSAARVSLRELARTAGVSNPYLSQVERG-----LRKPSAEILAAIAKG 94

Query: 65  TNETICQLLDLPFSDGRTTEKK 86
              +   L +      R     
Sbjct: 95  LKISAETLYEQAGILDRRDGNP 116


>gi|222530443|ref|YP_002574325.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457290|gb|ACM61552.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 67

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  + +    +   LA+  G+  +  ++ +          PS + I +I       I
Sbjct: 4  GKKIKELRKLKGFSQKELAKLTGVSQSYISELEAGIKT----NPSIKVIKRIAEVLEIDI 59

Query: 70 CQ 71
          CQ
Sbjct: 60 CQ 61


>gi|297202323|ref|ZP_06919720.1| signal peptidase [Streptomyces sviceus ATCC 29083]
 gi|197710157|gb|EDY54191.1| signal peptidase [Streptomyces sviceus ATCC 29083]
          Length = 145

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179
           PE+         +       +    SM+P  R GD L+++   +V  GD ++++      
Sbjct: 2   PELSQETERGRPLLPFVGVAEVTGPSMVPTLRHGDQLVVHWGARVVPGDIVVLRHPFQQD 61

Query: 180 -IVAKVLISRRGRSIDLMSLN 199
            +V K  + RR     ++  N
Sbjct: 62  LLVVKRAVERREGGWWVLGDN 82


>gi|164687559|ref|ZP_02211587.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM
          16795]
 gi|164603333|gb|EDQ96798.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM
          16795]
          Length = 139

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + ++ +   L+   LA +  +   + +K ++         P  + + KI      ++ 
Sbjct: 4  ENLKQLRKSKGLSQEELAIRLNVVRQTISKWEKGLSV-----PDADMLIKIADIFEVSVS 58

Query: 71 Q 71
          +
Sbjct: 59 E 59


>gi|160878668|ref|YP_001557636.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160427334|gb|ABX40897.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 114

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + ++ ++H LT S LA   GL PT+ +  +      R   PS E +  +    + +
Sbjct: 6  RLKQLRQKHKLTQSELAEILGLKPTAVSNYES-----RRNEPSFEKLIALSRYFDVS 57


>gi|332534116|ref|ZP_08409964.1| hypothetical protein PH505_bb00220 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036405|gb|EGI72874.1| hypothetical protein PH505_bb00220 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 208

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 54/216 (25%), Gaps = 36/216 (16%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + +      L+    A K G+  +  +  +    +        +   K    + E + 
Sbjct: 18  ERMRKARINAGLSQREAAEKIGVGQSRVSNYENEINKNVPPEF-LKLCAKAYNCSLEYLY 76

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
              D            +  +  +                                     
Sbjct: 77  GFTDEIEGGYAYRPINKDSVIAINKRELAKQNLTF------------------------- 111

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG 190
                        D++ML  + KG+ ++++  + V     +      G  V + L     
Sbjct: 112 ----QDLDEITVTDSAMLDAFTKGEQIVISKKVGVISKPAIYAITYGGTTVMRGLRKELN 167

Query: 191 RSIDLMSLNC-CYPVDTVEMSDIE---WIARIL--W 220
               L   N   Y   T+   +++    I + +  W
Sbjct: 168 GVYTLFVHNKQNYDDQTLTEDELKNLTIIGKYIGHW 203


>gi|325168260|ref|YP_004277301.1| XRE family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|325052939|dbj|BAJ83272.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 73

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+    ++    + ++      T   LA   GL PT     +R       R    +++ K
Sbjct: 1  MSLTDKQRFGRKVKQLRLAKGWTQEELAEHTGLHPTYIGGVERGE-----RNLGLDNLLK 55

Query: 61 ILAATNETI 69
          I  A  E  
Sbjct: 56 IARALGEPP 64


>gi|291458798|ref|ZP_06598188.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418594|gb|EFE92313.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 97

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + I  ++ R  +   LT + L+ K G+     ++ +        R PS   + +I  
Sbjct: 27 ERDITMSLIRARKEAGLTQAELSEKTGISQADISRLENGT-----RNPSLALLNRIAE 79


>gi|268591417|ref|ZP_06125638.1| putative transcriptional regulatory protein [Providencia rettgeri
           DSM 1131]
 gi|291313069|gb|EFE53522.1| putative transcriptional regulatory protein [Providencia rettgeri
           DSM 1131]
          Length = 185

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    + KI + I  + +  +L+ + L+R +G+   + +K +        R  + ESI  
Sbjct: 1   MDKKINIKIGQKIRLLRQARDLSLNELSRISGISKAALSKLESGDSN--PRIDTLESIAI 58

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L      +       +         EKE    +      G   +            +  
Sbjct: 59  ALRFPLSDLFTRQHEAYPYFLKATPSEKEYSQQFKFRISMGNISEIWQLTMKRGAI-INS 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSML 148
           P   S  +    + +     +  +   +
Sbjct: 118 PAHMSGTHEHIMVNSGSLMLRLHNDQNI 145


>gi|225376377|ref|ZP_03753598.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM
           16841]
 gi|225211753|gb|EEG94107.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM
           16841]
          Length = 380

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 27/109 (24%), Gaps = 7/109 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  + +++  +   LA K G+   S +K +     G    P  + I K+      T
Sbjct: 51  LADKIINLRKKNGWSQEELAEKLGVTRQSISKYE-----GAQSIPDLDKILKLSEIFGVT 105

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                 +            +                           + 
Sbjct: 106 T--DYLIKDELEEEEYASSQMQENESESDRSVHKVTMEMANEYLQIIDW 152


>gi|59711876|ref|YP_204652.1| DNA polymerase V, subunit D [Vibrio fischeri ES114]
 gi|197334590|ref|YP_002156066.1| DNA polymerase V subunit [Vibrio fischeri MJ11]
 gi|59479977|gb|AAW85764.1| DNA polymerase V, subunit D [Vibrio fischeri ES114]
 gi|197316080|gb|ACH65527.1| DNA polymerase V subunit [Vibrio fischeri MJ11]
          Length = 135

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
            +          +    P              +    +     +    SM  +    GD+
Sbjct: 1   MNVIPLHASAGISGFESPAAEYSQLSFDLDELLIEHPSSTFIGRASGDSMQGVGIFDGDL 60

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           LI++  + V   D ++     G+ V K+L     R + L+S N  Y    +   D   I 
Sbjct: 61  LIVDRYVTVQSNDVIVANFN-GEFVCKIL--DTQRRL-LVSANERYQTVPINDYDTFTIE 116

Query: 217 RIL 219
            ++
Sbjct: 117 GVV 119


>gi|237797306|ref|ZP_04585767.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020156|gb|EGI00213.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 182

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L     T+
Sbjct: 4   GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58

Query: 70  CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                     G+                  + + +    PS    F      P     ++
Sbjct: 59  ADFFTFDQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAP---GADS 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              P + S       +              +                   GD        
Sbjct: 116 GEEPIVHSEGEECGLVTRGTVELTINGQVNILG----------------PGDGYYFPTTL 159

Query: 178 GDIVAKVLISRRGRSIDLMSLN 199
                    +      +++S N
Sbjct: 160 PH----RFRNIGQDEAEIVSAN 177


>gi|332162055|ref|YP_004298632.1| putative UV protection and mutation protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606098|emb|CBY27596.1| error-prone repair protein UmuD [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666285|gb|ADZ42929.1| putative UV protection and mutation protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 118

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTS-MLPLYRKGDILILNSAIQVNCGDRL 171
              + +   +    +               +  S +      G +L+++ ++    GD +
Sbjct: 7   AAQDYIE--KRIDINEHCIVHPAATFFMTAEGESLIEAGIHHGALLVIDRSLPAKHGDIV 64

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218
           +     G+   K L  R   +  L +LN   P   +     D+     I
Sbjct: 65  V-ATIGGEFSIKRLYLRP--TPRLEALNAGTPALILCEGDEDLVIFGVI 110


>gi|297192149|ref|ZP_06909547.1| signal peptidase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151237|gb|EDY64114.2| signal peptidase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 139

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD L+++    +  GD  +++   +   ++ K L  RR     ++  
Sbjct: 16  EVTGPSMVPTLLHGDQLLVDYRASLRVGDVAVLRHPLQQDLLIVKRLAERRDGGWWVLGD 75

Query: 199 NC 200
           N 
Sbjct: 76  NP 77


>gi|271498957|ref|YP_003331982.1| XRE family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342512|gb|ACZ75277.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586]
          Length = 195

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 10/162 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESI 58
           + +++ E +  +    + +   L++++G+   + ++ +R          GR       ++
Sbjct: 14  TDRRLAERLAALRRERDWSLDELSQRSGISRATLSRLERMASSPTAVLLGRLCAVYGCTM 73

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +LA     + Q L +         +      ++    +G       G  P G + +  
Sbjct: 74  SGLLAEVELPLPQKLSVTQQPVWVDPETGFIRRVVSPSSAGFRAEMIHGELPAGARIDYN 133

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
             P +    + +Y +  Q          ++      D L   
Sbjct: 134 A-PPLAGLEHHLYVLDGQ---LTITLEGVIHTLGPQDSLRYR 171


>gi|255525754|ref|ZP_05392685.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296188039|ref|ZP_06856431.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium carboxidivorans P7]
 gi|255510577|gb|EET86886.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296047165|gb|EFG86607.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium carboxidivorans P7]
          Length = 140

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 4/89 (4%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  + +   L+   LA    +  T  ++ +    +     PS   +  I      + 
Sbjct: 4  GEFLKNLRKEKGLSQRQLADLCNISNTEISRIESGERQK----PSPNILKAIAPHLEISY 59

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           +L+        T + ++    +      
Sbjct: 60 GELMTKAGYIEETIDHEKYTELIFRTEDG 88


>gi|223937259|ref|ZP_03629165.1| transcriptional regulator, XRE family [bacterium Ellin514]
 gi|223894044|gb|EEF60499.1| transcriptional regulator, XRE family [bacterium Ellin514]
          Length = 73

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 5  SHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           H+++  EA+    +    +   LA KA L     ++ +R         P+ +++ KI  
Sbjct: 6  KHRRLLGEAVRAKRKEAGFSQEKLAEKADLSAVFVSRIERG-----KESPTLDNLVKIAK 60

Query: 64 ATNETICQ 71
          A    +  
Sbjct: 61 ALGTHVRD 68


>gi|75908414|ref|YP_322710.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
          29413]
 gi|75702139|gb|ABA21815.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
          29413]
          Length = 83

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +  +AI R     + +   LA KAGL     +  +        R PS ++I K+  A N 
Sbjct: 11 RFGKAIRRRRRELDYSQEELAEKAGLHRNYISSIETGT-----RNPSLKNIEKLAKALNI 65

Query: 68 TICQLLDLPF 77
          +I  L     
Sbjct: 66 SISDLFTNYG 75


>gi|125974946|ref|YP_001038856.1| XRE family transcriptional regulator [Clostridium thermocellum
          ATCC 27405]
 gi|125715171|gb|ABN53663.1| transcriptional regulator, XRE family [Clostridium thermocellum
          ATCC 27405]
          Length = 79

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 6/76 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E I       NLT   LA   G+D T+ +K +          PS  S  KI      
Sbjct: 9  EVRELIKEKRAALNLTQKQLADLVGVDRTTISKIENGIR------PSVNSAKKIAQILGL 62

Query: 68 TICQLLDLPFSDGRTT 83
                D        T
Sbjct: 63 DWTIFFDSDEEHQTET 78


>gi|300785112|ref|YP_003765403.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299794626|gb|ADJ45001.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 192

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 7/144 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +     +T + +A   G+  ++ ++ +        R    E +  +  A +  
Sbjct: 12  VGPRLRALRRHRGMTLADVAAATGVSESTLSRLESGQ-----RRAGLELLLPLARAYDVP 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP--EIRSP 126
           +  L+  P +              + F P                  +   VP  +I   
Sbjct: 67  LDDLVGAPRTGDPRIHLTPIHRHGMTFVPLSRRPGGMQAYKMIIPSADRPPVPHHQIHEG 126

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL 150
           H  +Y +         +   +LP 
Sbjct: 127 HEWLYVLHGNLRLVLGEHDLVLPA 150


>gi|295110461|emb|CBL24414.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 315

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI   + +  +  NLT   LA K G+   + ++ +          P    + ++    +
Sbjct: 4  KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGTN-----LPDLSILVELAEYYD 58

Query: 67 ETICQ 71
            + +
Sbjct: 59 VEMRE 63


>gi|291560642|emb|CBL39442.1| Predicted transcriptional regulators [butyrate-producing bacterium
           SSC/2]
          Length = 138

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 6/136 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +   +   I  + ++  LT   LA K G+   S ++    G     R P   +I  I  
Sbjct: 1   MNENNLGGRIADLLKKSGLTQRELANKVGVTEASMSRYISGG-----RIPKGPTIANIAN 55

Query: 64  ATNETICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           A + T   LL       +  +        +                       +    P 
Sbjct: 56  ALHTTSDYLLGTEEDITKEQKTIAGIAGAVKEDREKSKTVTDILEEVKQEICDDYCKYPT 115

Query: 123 IRSPHNGIYAIQTQDT 138
           I +    ++A  +   
Sbjct: 116 IVNDREDLFADDSPCM 131


>gi|260768699|ref|ZP_05877633.1| putrescine utilization regulator [Vibrio furnissii CIP 102972]
 gi|260616729|gb|EEX41914.1| putrescine utilization regulator [Vibrio furnissii CIP 102972]
          Length = 184

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 53/192 (27%), Gaps = 17/192 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I + I ++ + H L+   LA KA +  ++ +  +   +      PS  S+ KI+   N
Sbjct: 4   DSIGQKIAQLRKEHKLSQRELAEKANITHSAISSIENNKV-----SPSVSSLHKIVKVFN 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++ +                 E  +       S      G       +           
Sbjct: 59  LSLSEFFTQDQEIDDRPVVIAPEQLIEIGNERVSMRLVCDGRDKRRMGFLIECFQPHTDT 118

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
                  + ++       T +        + + +    +  G+           V     
Sbjct: 119 GVISIKHEGEE-----SGTVLEGEIE---LTLGDKTYVIREGE----CYLFDTNVPHKFT 166

Query: 187 SRRGRSIDLMSL 198
           ++  R   ++S 
Sbjct: 167 NKTDRVCRIISA 178


>gi|229017114|ref|ZP_04174030.1| Transcriptional regulator, MerR [Bacillus cereus AH1273]
 gi|229023292|ref|ZP_04179801.1| Transcriptional regulator, MerR [Bacillus cereus AH1272]
 gi|228737997|gb|EEL88484.1| Transcriptional regulator, MerR [Bacillus cereus AH1272]
 gi|228744173|gb|EEL94259.1| Transcriptional regulator, MerR [Bacillus cereus AH1273]
          Length = 181

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 8/138 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + K++K I         S  F  +           + +P   +  
Sbjct: 63  SFLLEETNTDDLIVRSHKRKKMIIDNLSYELLSPDFTGNLATAI------MTIPPNTASS 116

Query: 128 NGIYAIQTQDTRHKTQDT 145
             +   + ++        
Sbjct: 117 ENVLEHKGEELAFVLDGE 134


>gi|226313174|ref|YP_002773068.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226096122|dbj|BAH44564.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 120

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + I ++ + +N T    A +  + P   +  +R         PS E I +I    N
Sbjct: 5  ETVGQRIRKLRKANNWTQEQFANRVNVSPQKVSNWERDYT-----SPSVEDIARIAQICN 59


>gi|295836548|ref|ZP_06823481.1| signal peptidase [Streptomyces sp. SPB74]
 gi|295826090|gb|EDY44256.2| signal peptidase [Streptomyces sp. SPB74]
          Length = 187

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198
           + +  SMLP  R GD L++    +V  GD ++++       ++ K    RRG    +++ 
Sbjct: 21  EVRGPSMLPTLRHGDRLLVRYGARVRPGDVVVLRHPFQQDLLIVKRAAERRGAGWWVLAD 80

Query: 199 NC----CYPVDTVEMSDIEWIARIL 219
           N           V   ++  + R+L
Sbjct: 81  NPWAGGDSNDYGVVPREL-VLGRVL 104


>gi|162453255|ref|YP_001615622.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
 gi|161163837|emb|CAN95142.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
          Length = 186

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I ++ E   LT   LA+ AG+   ++   +          P+   + +  AA   
Sbjct: 10 RLAKNIKQLREARGLTQQQLAKLAGVPRATWAHLESGAAN-----PTLGVLHRAAAALQV 64

Query: 68 TICQLLDLPFSDGR 81
          +I ++L  P +  +
Sbjct: 65 SIEEMLSAPRATCQ 78


>gi|153002766|ref|YP_001368447.1| putative prophage repressor [Shewanella baltica OS185]
 gi|160877509|ref|YP_001556825.1| peptidase S24/S26 domain-containing protein [Shewanella baltica
           OS195]
 gi|151367384|gb|ABS10384.1| putative prophage repressor [Shewanella baltica OS185]
 gi|160863031|gb|ABX51565.1| peptidase S24 and S26 domain protein [Shewanella baltica OS195]
 gi|315269708|gb|ADT96561.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           OS678]
          Length = 135

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 12/120 (10%)

Query: 108 VFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
                        P         S    +    +       +  SM  +    GD+LI++
Sbjct: 5   PIHASAGITGFESPAAEYGQLGLSLDELLVVHPSATFIGIAKGDSMQGVGIFYGDLLIVD 64

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
                  GD ++     G+ V K+L  +      L+S N  +    + +  +      ++
Sbjct: 65  RQETARHGDVIVANFN-GEFVCKILDKK---HRMLLSSNEQHQPQPIHDYDNFTIEGVVI 120


>gi|71910858|ref|YP_282408.1| transcriptional regulator [Streptococcus pyogenes MGAS5005]
 gi|71853640|gb|AAZ51663.1| transcriptional regulator [Streptococcus pyogenes MGAS5005]
          Length = 66

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          AI R+ E   ++   LA K+G+  T+ +  +      ++      ++ K+  A +  I  
Sbjct: 5  AIQRLREEKKMSQEELANKSGVSRTTISLIE----TDKSTTVKLSTLQKLAVALDVPIGY 60

Query: 72 LLDLP 76
               
Sbjct: 61 FFKHN 65


>gi|329941606|ref|ZP_08290871.1| regulatory protein [Streptomyces griseoaurantiacus M045]
 gi|329299323|gb|EGG43223.1| regulatory protein [Streptomyces griseoaurantiacus M045]
          Length = 229

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 5/133 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+ +    T + L+   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 47  EVGPRLRRIRKERGATLAALSEATGISVSTLSRLESG-----LRKPSLELLLPIARAHQV 101

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L+  P         +        + P                +  +   P     +
Sbjct: 102 PLDELVGAPRVGDPRVRAEPIARFGRTYWPLTRQPGGLQAFKVLEPQRASEPHPRTHEGY 161

Query: 128 NGIYAIQTQDTRH 140
             +Y +  +    
Sbjct: 162 EWLYVMSGKLRLV 174


>gi|325526296|gb|EGD03907.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 132

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++  AI        LT + LA    L+  + ++ +R       R P+   + ++  A + 
Sbjct: 20 RVGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGT-----RMPTLHRLQQLSDALDC 74

Query: 68 TICQ 71
          ++ Q
Sbjct: 75 SVDQ 78


>gi|325696215|gb|EGD38106.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK160]
          Length = 180

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 16/41 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
             I  + ++  L+   LA+K G+   +    +    + + 
Sbjct: 1  MNRIKEIRQKEGLSQQALAKKIGVSYRTIQNWENGVNQIKP 41


>gi|313898798|ref|ZP_07832332.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956380|gb|EFR38014.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 206

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +   +    LA K G++  S +K +R        +P+ +++ KI+   + T
Sbjct: 6  LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLN-----YPAYDTLEKIMEVLDVT 60

Query: 69 ICQLLDLPFSDGRTTEKKE 87
            +LL   +      EK+ 
Sbjct: 61 PNELLSGEWKYINQAEKEV 79


>gi|209966373|ref|YP_002299288.1| DNA-binding protein, putative [Rhodospirillum centenum SW]
 gi|209959839|gb|ACJ00476.1| DNA-binding protein, putative [Rhodospirillum centenum SW]
          Length = 101

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          M   + K +  AI R      L+   LA KAG+             +GR R
Sbjct: 1  MRVLTPKDLGTAIGRRRRALGLSQRALAEKAGVSR----DWLIGLEQGRPR 47


>gi|160944131|ref|ZP_02091361.1| hypothetical protein FAEPRAM212_01633 [Faecalibacterium
          prausnitzii M21/2]
 gi|158444807|gb|EDP21811.1| hypothetical protein FAEPRAM212_01633 [Faecalibacterium
          prausnitzii M21/2]
 gi|295105048|emb|CBL02592.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 101

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I R+ E   L+ + LARK G+   S N  +          P+ + +  +    + T
Sbjct: 2  ISDNIKRLRENTGLSQAALARKLGVTRASVNAWE-----MELSAPTAQYLIALAQLFHTT 56

Query: 69 ICQ 71
             
Sbjct: 57 TDD 59


>gi|114563134|ref|YP_750647.1| putative prophage repressor [Shewanella frigidimarina NCIMB 400]
 gi|114334427|gb|ABI71809.1| putative prophage repressor [Shewanella frigidimarina NCIMB 400]
          Length = 137

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 12/124 (9%)

Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
                            P         S    +    +       Q  SM  +    GD+
Sbjct: 1   MRVIPIAASAGITGFESPAAEYLQLGLSLDEILIQHPSSTFIGLAQGESMQGVGIYDGDL 60

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWI 215
           LI++       GD ++     G+ V K+L   R     LMS N  +   T+ +  D    
Sbjct: 61  LIVDRHETARNGDVIVANFN-GEFVCKILDMHRR---MLMSSNEQHLPVTICDYDDFSIE 116

Query: 216 ARIL 219
             ++
Sbjct: 117 GVVI 120


>gi|99078239|ref|YP_611497.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035377|gb|ABF62235.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
          sp. TM1040]
          Length = 190

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   +  + E+ NL+   LA+K G+  ++ +  +   +      PS  ++ +IL    
Sbjct: 11 EDLGPRLRSVREKANLSQRALAKKTGVPNSTISLIESGKMN-----PSVGALRRILDGIP 65

Query: 67 ETICQLLDLPFSDGRTTE 84
           ++           + + 
Sbjct: 66 ISLSDFFAFEPETEKASF 83


>gi|257055531|ref|YP_003133363.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256585403|gb|ACU96536.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 184

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ R   +  L+ + LAR+AG+  ++ ++ +          PS E+I+ +  A   +
Sbjct: 10 IAASLQRERRKAGLSLAELARRAGIAKSTLSQLESGSGN-----PSVETIWALSTALGVS 64

Query: 69 ICQ 71
            Q
Sbjct: 65 FSQ 67


>gi|255524707|ref|ZP_05391659.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296185668|ref|ZP_06854077.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium carboxidivorans P7]
 gi|255511601|gb|EET87889.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296049796|gb|EFG89221.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium carboxidivorans P7]
          Length = 120

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + ++ +    +   LA K G+   + +K +          P   +I K+    N +
Sbjct: 3  ISERLQKLRKDERYSQEQLAEKLGVTRQAISKWESNQGN-----PDINNIIKLSEIYNVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91
             LL       +  E   KE  
Sbjct: 58 TDYLLKGEEQISKPIEIDSKENK 80


>gi|251795933|ref|YP_003010664.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247543559|gb|ACT00578.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 231

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +  R  ++   LA +AGLD +  +  +R       R  S  +I KI +A    +
Sbjct: 8  GQRIKELRARSGMSQEHLAYRAGLDRSYISGVERGE-----RNVSIINIEKIASALQIGV 62

Query: 70 CQLLDLPFSDGRTTEKK 86
            L        +   + 
Sbjct: 63 AYLFSGERFSPKQAYQP 79


>gi|310658782|ref|YP_003936503.1| Xre family transcriptional regulator [Clostridium sticklandii DSM
           519]
 gi|308825560|emb|CBH21598.1| Transcriptional regulator, XRE family [Clostridium sticklandii]
          Length = 179

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 44/215 (20%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+   +NLT   LA +  L     +K +R         PS  ++  IL A    
Sbjct: 3   IGEKIKRLRILNNLTQEELALRCDLTKGFISKLERDLT-----SPSIATLVDILEALGTD 57

Query: 69  ICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +    +   ++     ++   +    +          +S           +  PE  S  
Sbjct: 58  LKDFFNESSNNKIVFGKEDIYDAYYEHNKSKIHWLIPNSQKNSMEPILIEIE-PEGISEL 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
           +  +  +      K                          G  +L+         K    
Sbjct: 117 DRPHPGEEFGYVLK--------------------------GSIILVVGN------KKYKV 144

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
           ++G S         Y    +  S     A I+W S
Sbjct: 145 KKGESFYFTPDKEHY---IINNSTTN--AEIIWVS 174


>gi|229541996|ref|ZP_04431056.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
 gi|229326416|gb|EEN92091.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
          Length = 189

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI + I  +  +  LT   L  +  L     ++ +R         PS ++ F IL     
Sbjct: 11  KIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLS-----SPSIDTFFNILEVLGC 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           T  +  D    + +    +E +   L        G+    + P  N+     +
Sbjct: 66  TPKEFFDEEEREQKVVYGEEDQTDYL----DEERGYKIQWLVPESNEKEMEPI 114


>gi|229059476|ref|ZP_04196859.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
 gi|228719842|gb|EEL71434.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
          Length = 181

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|254515458|ref|ZP_05127518.1| conserved domain protein [gamma proteobacterium NOR5-3]
 gi|219675180|gb|EED31546.1| conserved domain protein [gamma proteobacterium NOR5-3]
          Length = 394

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 6/122 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + +  +   ++    A   GLD  + ++ +   ++ +       +I+K+  A N  
Sbjct: 8   VGERLTQARKARGVSAGDFADMVGLDRVTISRYETGKMDPKP-----STIYKMAEALNFP 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPH 127
                    S   +     +                   +             P++  P 
Sbjct: 63  TGYFSRELNSREGSGPLFWRARLTAPVKMRERTAVRLEWLEDIIEFLEEYFDFPDMNLPD 122

Query: 128 NG 129
            G
Sbjct: 123 LG 124


>gi|205352715|ref|YP_002226516.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856901|ref|YP_002243552.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272496|emb|CAR37385.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708704|emb|CAR33030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326627783|gb|EGE34126.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 178

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHKAGVVEH 124


>gi|254385813|ref|ZP_05001133.1| transcriptional regulatory protein [Streptomyces sp. Mg1]
 gi|194344678|gb|EDX25644.1| transcriptional regulatory protein [Streptomyces sp. Mg1]
          Length = 192

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 7/142 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S   +   +     R  LT  GLA +AGL      + ++         PS E++ K
Sbjct: 3   MDQLSQ-SLARNLKHWRTRRGLTLDGLAARAGLSRGMVIQVEQARTN-----PSLETMVK 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A    +  LLDL            + + + +   SGS     +G    G     +  
Sbjct: 57  LADALGVDMTALLDLNQEPHVRITPPGRAVRV-WSTDSGSFSTLLTGRCNQGAIELWLWR 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKT 142
            E                    
Sbjct: 116 LEPGEMSESSPHPPGTTELLHV 137


>gi|167756656|ref|ZP_02428783.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402]
 gi|237733944|ref|ZP_04564425.1| predicted protein [Mollicutes bacterium D7]
 gi|167702831|gb|EDS17410.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402]
 gi|229383025|gb|EEO33116.1| predicted protein [Coprobacillus sp. D7]
          Length = 139

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 1/105 (0%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I         + S L +  GL  +S +  +     G +   S  S+ KI  A   +
Sbjct: 9   IGKYIKSTRLSKGWSQSKLEKITGLSASSISNIELGNR-GVSYNISLPSLVKIAHAFEMS 67

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +  LL          ++  +      +  +         + P   
Sbjct: 68  LVDLLSQSGYLSAIGDECYEAEKSQIYIHNYELINIYHRLTPIQQ 112


>gi|163939634|ref|YP_001644518.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229132657|ref|ZP_04261504.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196]
 gi|229166679|ref|ZP_04294429.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
 gi|163861831|gb|ABY42890.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228616676|gb|EEK73751.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
 gi|228650784|gb|EEL06772.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196]
          Length = 181

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|225376313|ref|ZP_03753534.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans
          DSM 16841]
 gi|225211689|gb|EEG94043.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans
          DSM 16841]
          Length = 110

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K I   I +  +   +T   +A    ++P+  +  +          PS  ++ K
Sbjct: 1  MADLDFKVIGLKIKQRRQELGITQEYIANALDVNPSHISNIECGRAN-----PSLTALIK 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          I    + ++   +   ++      +++     +  
Sbjct: 56 IANILSCSVDYFISDEYTFEINKNREKTLDDKIID 90


>gi|239828402|ref|YP_002951026.1| XRE family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808695|gb|ACS25760.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70]
          Length = 97

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    ++ N++   LA + G+  ++  + +          P  E++FKI  A N  
Sbjct: 26 IAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLT-----SPRVETLFKISQALNTP 80

Query: 69 ICQLLDLPFSDGRTTE 84
                         +
Sbjct: 81 FIIDGTSRQDHNLHVQ 96


>gi|166030939|ref|ZP_02233768.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC
          27755]
 gi|166029206|gb|EDR47963.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC
          27755]
          Length = 179

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  +     LT   LA ++ L     ++ +R         PS  ++  IL     
Sbjct: 2  DIGKKIKELRVAKGLTQEELADRSELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
          T+ +       D    + ++    +
Sbjct: 57 TVSEFFQEEPEDQIVFQNEDYFEKI 81


>gi|75676148|ref|YP_318569.1| XRE family transcriptional regulator [Nitrobacter winogradskyi
          Nb-255]
 gi|74421018|gb|ABA05217.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi
          Nb-255]
          Length = 410

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++ + +    ER  L+   +A   GL  T+    +        R  ST  + ++ 
Sbjct: 1  MIDAAQLGDRLRAARERRGLSQQAVAEALGLPRTAVTNMESGT-----RSVSTLELTRLA 55

Query: 63 AATNETICQLLDLPF 77
              +     L +  
Sbjct: 56 DLYGQQATFFLSMHE 70


>gi|167036464|ref|YP_001664042.1| XRE family transcriptional regulator [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320114890|ref|YP_004185049.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166855298|gb|ABY93706.1| transcriptional regulator, XRE family [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319927981|gb|ADV78666.1| helix-turn-helix domain protein [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 69

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +  ++ LT   LA+  G+ P   ++ +R       R P  E+  KI    N T+ ++
Sbjct: 4  LKELRIKYKLTQKELAKNLGVTPDYISQIERG------RIPGMETAIKIANFFNTTVDEI 57

Query: 73 L 73
           
Sbjct: 58 F 58


>gi|325677942|ref|ZP_08157584.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324110496|gb|EGC04670.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 196

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 1   MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M  FS    I + I R+ E   ++     +  G+   +  + +        R PS  +  
Sbjct: 128 MQEFSGNSMIGKRIVRLREESGMSRQDFIKAMGVSAQTVYRWENGE-----RIPSMATYM 182

Query: 60  KILAATN 66
           KI+    
Sbjct: 183 KIMQVLG 189


>gi|260684687|ref|YP_003215972.1| putative phage DNA-binding protein [Clostridium difficile CD196]
 gi|260688345|ref|YP_003219479.1| putative phage DNA-binding protein [Clostridium difficile R20291]
 gi|260210850|emb|CBA65947.1| putative phage DNA-binding protein [Clostridium difficile CD196]
 gi|260214362|emb|CBE06743.1| putative phage DNA-binding protein [Clostridium difficile R20291]
          Length = 280

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 54/181 (29%), Gaps = 14/181 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + + ++ ++  LT   LA  +G+   +    +        R PS +++ K+  A   
Sbjct: 28  QIGKNLKKIRKQKELTQIQLAEISGISRNALINYEND-----KRIPSIDTLSKLAKALKI 82

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                     +        E  +  L          FD  +    N      +    S  
Sbjct: 83  EKTIFYFDIEN---EVMTNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLL 139

Query: 128 NGIYAIQTQDT----RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            G ++ + Q      + +  +  +        +        ++  D    +    D++ K
Sbjct: 140 LGAWSDKDQYYKLGEKLELNENQVYNWILSDCVSNTELDFSLHPDDI--KEIIKNDVLIK 197

Query: 184 V 184
            
Sbjct: 198 Q 198


>gi|307244113|ref|ZP_07526231.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492484|gb|EFM64519.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 179

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 15/139 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E + R+     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2   EIGEKLRRLRTEKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLIDILEILGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-----PE 122
            +        ++  T          ++       G+    + P   K++   V     P 
Sbjct: 57  NLRDFFADEVNEKVTF-----AEDDMFETYDEDLGYQFKWLVPNSQKYDMEPVLVNIEPG 111

Query: 123 IRSPHNGIYAIQTQDTRHK 141
                   +  +      K
Sbjct: 112 GSYKEEKPHEGEEFGFVLK 130


>gi|302535844|ref|ZP_07288186.1| DNA-binding protein [Streptomyces sp. C]
 gi|302444739|gb|EFL16555.1| DNA-binding protein [Streptomyces sp. C]
          Length = 145

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +     +  L+   LA  AG+     ++ +R       R PS + + +
Sbjct: 7  MASLNVGNLGEYLREQRRQAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSADILQQ 61

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L             + +   ++
Sbjct: 62 LAKALRISAETLYVQAGILDERDRDEVETRAVI 94


>gi|239834303|ref|ZP_04682631.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG
          3301]
 gi|239822366|gb|EEQ93935.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG
          3301]
          Length = 470

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 4  FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S +KI+    I R+     LT + +A   G+ P+  N  +R       R  + + + K+
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55

Query: 62 L 62
           
Sbjct: 56 A 56


>gi|239503877|ref|ZP_04663187.1| Helix-turn-helix family protein [Acinetobacter baumannii AB900]
          Length = 182

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 70/194 (36%), Gaps = 21/194 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + + R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N
Sbjct: 6   EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L++ P +  +     +            +            + +  +  P     
Sbjct: 61  IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +  + + + +     +  +++         +++ A++++ GD +           K + 
Sbjct: 120 LSEPHPVGSVEHIIVVEGRALVG--------LIDEAVELDVGDYICYPADQ-----KHIF 166

Query: 187 S--RRGRSIDLMSL 198
                G    L+S 
Sbjct: 167 RALETGTKALLISE 180


>gi|227551187|ref|ZP_03981236.1| signal peptidase I [Enterococcus faecium TX1330]
 gi|227179655|gb|EEI60627.1| signal peptidase I [Enterococcus faecium TX1330]
          Length = 157

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLN 199
              +  SM  + ++GD++++    ++   D ++ +   G I  K +I   G         
Sbjct: 10  VPVEGNSMENVLKQGDMVVMEKFSEIRRFDIVVFQLADGTIYIKRVIGLPG--------- 60

Query: 200 CCYPVDTVEMSDIEWIARIL 219
                 + +   ++   +++
Sbjct: 61  ---ENVSYQNDQLKINGKVV 77


>gi|254976735|ref|ZP_05273207.1| putative phage DNA-binding protein [Clostridium difficile
           QCD-66c26]
 gi|255094119|ref|ZP_05323597.1| putative phage DNA-binding protein [Clostridium difficile CIP
           107932]
 gi|255315870|ref|ZP_05357453.1| putative phage DNA-binding protein [Clostridium difficile
           QCD-76w55]
 gi|255518531|ref|ZP_05386207.1| putative phage DNA-binding protein [Clostridium difficile
           QCD-97b34]
 gi|255651650|ref|ZP_05398552.1| putative phage DNA-binding protein [Clostridium difficile
           QCD-37x79]
          Length = 254

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 54/181 (29%), Gaps = 14/181 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + + ++ ++  LT   LA  +G+   +    +        R PS +++ K+  A   
Sbjct: 2   QIGKNLKKIRKQKELTQIQLAEISGISRNALINYEND-----KRIPSIDTLSKLAKALKI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                     +        E  +  L          FD  +    N      +    S  
Sbjct: 57  EKTIFYFDIEN---EVMTNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLL 113

Query: 128 NGIYAIQTQDT----RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
            G ++ + Q      + +  +  +        +        ++  D    +    D++ K
Sbjct: 114 LGAWSDKDQYYKLGEKLELNENQVYNWILSDCVSNTELDFSLHPDDI--KEIIKNDVLIK 171

Query: 184 V 184
            
Sbjct: 172 Q 172


>gi|145294858|ref|YP_001137679.1| hypothetical protein cgR_0805 [Corynebacterium glutamicum R]
 gi|140844778|dbj|BAF53777.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 124

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 1/92 (1%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNETI 69
             + ++      +   LA  +G+   + +  +R    +G    P   +I+++  A +   
Sbjct: 15  SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 74

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
             L+             E     + +P     
Sbjct: 75  IVLMPAGSVPVAKICVDETAAIDVRWPSEKDP 106


>gi|332653867|ref|ZP_08419611.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
 gi|332516953|gb|EGJ46558.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
          Length = 87

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + ++ +   L+ S LA  AG+      + +R   +         ++ KI  A    + 
Sbjct: 12 EGLQKLRKAAGLSQSQLADLAGIKVQVLQQYERGARD--INGAKLPTLLKICNALECRLA 69

Query: 71 QLLDLPF 77
           ++    
Sbjct: 70 DIITDEE 76


>gi|296876191|ref|ZP_06900245.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|312867365|ref|ZP_07727574.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|319946640|ref|ZP_08020874.1| XRE family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|322389882|ref|ZP_08063423.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
 gi|296432902|gb|EFH18695.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|311097066|gb|EFQ55301.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|319746688|gb|EFV98947.1| XRE family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|321143463|gb|EFX38900.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
          Length = 69

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   +  +  R  L  S LA+ AG+   S +  +R     
Sbjct: 3  LKNRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTP 42


>gi|228474268|ref|ZP_04059003.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
           SK119]
 gi|314936712|ref|ZP_07844059.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
           subsp. hominis C80]
 gi|228271627|gb|EEK12974.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
           SK119]
 gi|313655331|gb|EFS19076.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
           subsp. hominis C80]
          Length = 179

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 13/141 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   +  +  + NLT   LA +  L     ++ +          PS E+   IL     
Sbjct: 2   QIGYKLKNLRRQKNLTQEELAERTDLSKGYISQIESEYA-----SPSMETFLSILEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T          +    +K E+ I   Y       G+  + V P+ N+     +     P 
Sbjct: 57  TPSDFFKEKAKEKVLYKKSERTIYDEY-----DRGYILNWVVPSSNENEMEPLIITIKPG 111

Query: 128 NGIYA---IQTQDTRHKTQDT 145
           +   +    ++    +  +  
Sbjct: 112 SSYKSFEPSESDTFIYCLEGC 132


>gi|332796468|ref|YP_004457968.1| XRE family transcriptional regulator [Acidianus hospitalis W1]
 gi|332694203|gb|AEE93670.1| XRE family transcriptional regulator [Acidianus hospitalis W1]
          Length = 190

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 11/121 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ +   LT + LA++ G+  +   K +   I+     P    I KI       I   
Sbjct: 8   LKKLRQIAGLTQAELAKRVGVSQSFIAKIENGKID-----PKFSIIKKIYDELLLMINIQ 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP------TGNKWNTVGVPEIRSP 126
                          ++  +L                        G  ++ V + +I S 
Sbjct: 63  DTAEKIMHSPVIVAHEKDDILSVVNKMENYNISQIPVVNNDEKLIGIIYDYVLLRKIISN 122

Query: 127 H 127
           +
Sbjct: 123 N 123


>gi|222147026|ref|YP_002547983.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221734016|gb|ACM34979.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 131

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      +A+  + ER  ++   +A+  G+ P   +  +     GR   PS + + +
Sbjct: 1  MTPF-----GDAVRGLRERKGVSQKDMAKAIGVTPAYLSALE----HGRRGKPSFDLLQR 51

Query: 61 ILAATNETICQ 71
          I    N    +
Sbjct: 52 IAGYFNIIWDE 62


>gi|148555803|ref|YP_001263385.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148500993|gb|ABQ69247.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1]
          Length = 473

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/216 (9%), Positives = 49/216 (22%), Gaps = 36/216 (16%)

Query: 1   MTSFSHKKIWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   +  +++    +  + +R  L  + +A + GL  +  ++ +    + R   P+    
Sbjct: 1   MARRTGTRLFAGHELRALRQRVGLGQAAMAARVGLSVSYLSQLEN---DDRPITPAVGEA 57

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                A      +           T ++    PL      G                  V
Sbjct: 58  --FAKAFPIDWNRDTAGDAERRLATLREAFADPLFANAEVGPQMLHRMVEQQPVFADQFV 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI--------LNSAIQV----- 165
            + +          +              LP     D           ++ A +      
Sbjct: 116 RLHDAWRRAEERLQLVDDRIASGVPGDDRLPWEEVRDWFHEEGNYVDAIDRAAEALADDL 175

Query: 166 ----------------NCGDRLLIKPRTGDIVAKVL 185
                             G  ++     G  + +  
Sbjct: 176 DAEPLPEALIAHALKRRHGVDIVTAADDGGGMLRRF 211


>gi|222053821|ref|YP_002536183.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221563110|gb|ACM19082.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 106

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + + + +   I  + +   +T   LA K G+DP   +  +          PS E++  
Sbjct: 1   MKT-TKELLGARIKELRKLRKVTQEKLAEKIGVDPKYVSFIEVGRS-----SPSLEALEN 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           I  A +  I  L +    + R     + +  L            
Sbjct: 55  ISQALDVEIKDLFEFSHHEARPASIDQIDSVLETVTDDQLKILH 98


>gi|310779002|ref|YP_003967335.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
           2926]
 gi|309748325|gb|ADO82987.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
           2926]
          Length = 179

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 12/138 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+ +   LT   LA +  L     ++ +R         PS  ++  IL +    
Sbjct: 3   IGEKIKRLRQGKLLTQEELADRCELSKGFISQLERDLT-----SPSIATLVDILESLGTN 57

Query: 69  ICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           + +  +    +            +       + +    +       +  T  +  +  + 
Sbjct: 58  LKEFFNEEEDEKIVFSNDDFFEFEDNDLKYRIDWIVPNAQKNAMEPILITLAQEGSYKLE 117

Query: 122 EIRSPHNGIYAIQTQDTR 139
                    Y ++     
Sbjct: 118 SAHEGEEFGYVLKGNIYV 135


>gi|302379450|ref|ZP_07267937.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna ACS-171-V-Col3]
 gi|303233840|ref|ZP_07320493.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna BVS033A4]
 gi|302312795|gb|EFK94789.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna ACS-171-V-Col3]
 gi|302495035|gb|EFL54788.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna BVS033A4]
          Length = 98

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I  A+       NLT   L+ K G+D +  +K +        R PS   + ++      
Sbjct: 29 DIIRALVSARTSQNLTQKQLSEKTGIDQSDISKLENGT-----RNPSINLLKRLADGLGM 83

Query: 68 T 68
           
Sbjct: 84 D 84


>gi|284029961|ref|YP_003379892.1| SARP family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283809254|gb|ADB31093.1| transcriptional regulator, SARP family [Kribbella flavida DSM
          17836]
          Length = 1081

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  E +     +  +T   LA +AGL   +    ++    GR R P  +S+  +  A  
Sbjct: 19 RFGELLRAFRRQAGITQRALADRAGLSAGAIRDLEQ----GRTRSPKADSVQALATALG 73


>gi|269139111|ref|YP_003295812.1| predicted transcriptional regulator [Edwardsiella tarda EIB202]
 gi|267984772|gb|ACY84601.1| predicted transcriptional regulator [Edwardsiella tarda EIB202]
          Length = 194

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 1   MTSFSHKKIWEA-IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           M   S  +I ++ I R+     +    T + LA+++G+     +K +R         PS 
Sbjct: 1   MDKTSKNQIVDSDIARLLLKHRKTRGWTVAELAQRSGVSQAMISKVERGTS-----SPSA 55

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
             + ++ +A N T+            +  +   +        S   G     + P G   
Sbjct: 56  TILSRLASAMNITLSTFFAELEQHQNSRVRFAHQQQHWTDEQS---GITRWSLSPVGACP 112

Query: 116 NTVGV 120
             + V
Sbjct: 113 ELIRV 117


>gi|21283165|ref|NP_646253.1| phage repressor [Staphylococcus aureus subsp. aureus MW2]
 gi|300911879|ref|ZP_07129322.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
 gi|21204605|dbj|BAB95301.1| phage repressor [Staphylococcus aureus subsp. aureus MW2]
 gi|300886125|gb|EFK81327.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
          Length = 107

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +  +I + I ++ + +N+  +  A K G++ ++ ++ +       +R    E I +I 
Sbjct: 1  MRTSAEIGKLIKQLRKENNVNLTDFAIKIGVNKSTLSRYENG-----SRKIPMEDIAEIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89
           A   T   LL          + +   
Sbjct: 56 NALKVTPEYLLLKNRQPENEVQHRAAH 82


>gi|325282527|ref|YP_004255068.1| transcriptional regulator, XRE family [Deinococcus proteolyticus
          MRP]
 gi|324314336|gb|ADY25451.1| transcriptional regulator, XRE family [Deinococcus proteolyticus
          MRP]
          Length = 67

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  +   H LT + LA +  +   + N  +    +     PS    F++       I 
Sbjct: 3  NRIKVLRAEHGLTQAELADRLDVSRQTVNALETGKYD-----PSLPLAFRLARLFGLRIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DIFQDEE 64


>gi|322390908|ref|ZP_08064416.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903]
 gi|321142421|gb|EFX37891.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903]
          Length = 158

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 6/146 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  + + H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2   IGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               +          E  +  + +      G+        F      +           +
Sbjct: 57  YID-IVGEEKMLTPVEDYQLTLKIEVIKERGANILAQLYRFQDEQGISFDDTSNPWVLMS 115

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKG 154
              +       +       +  Y   
Sbjct: 116 DDLSDLLNTKIYLVGTVDEVERYNGY 141


>gi|307328736|ref|ZP_07607908.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885685|gb|EFN16699.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
          Length = 204

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 6/127 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESIF 59
             ++   +  +      +   LAR+ G+  ++ ++ +R  I       +T       ++ 
Sbjct: 24  EARLATRLGDLRRERGWSLDELARRTGISRSTLSRLERGEISPTAALLNTLCAAYERTMS 83

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++LA       Q++          E        +  P +G  G    G    G      G
Sbjct: 84  RLLAEVEAEPPQVVRAAAQPVWRDETSGFARRSVSPPHAGLRGEVVEGTLRPGADIAYDG 143

Query: 120 VPEIRSP 126
            P     
Sbjct: 144 PPVPGVE 150


>gi|302557707|ref|ZP_07310049.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          griseoflavus Tu4000]
 gi|302475325|gb|EFL38418.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          griseoflavus Tu4000]
          Length = 509

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA       ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQTQLAEALNTSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|15894128|ref|NP_347477.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023733|gb|AAK78817.1|AE007599_13 Predicted transcriptional regulator [Clostridium acetobutylicum
          ATCC 824]
 gi|325508255|gb|ADZ19891.1| transcriptional regulator [Clostridium acetobutylicum EA 2018]
          Length = 179

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I R+     LT   LA +  L     ++ +R         PS  ++  IL A   
Sbjct: 2  DIGEKIKRLRIEKQLTQEELANRCELSKGFISQIERNLT-----SPSIATLTDILDALGT 56

Query: 68 TICQLLDLPFS 78
           +         
Sbjct: 57 NLPDFFKEDNQ 67


>gi|325979442|ref|YP_004289158.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325179370|emb|CBZ49414.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 119

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/99 (9%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++ +   LT   +A+K  +   S++  ++        +P+ E + ++   + + + 
Sbjct: 4   ERLKKLRKEAGLTQQQVAKKLRVGQNSYSNWEKGIRT--PIFPTIEKLAELFNVSTDYLT 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
              D+   +   + +    +         +         
Sbjct: 62  GKTDIKEKNENNSIETTANVLFRTTVKDLNLTPEQEEQL 100


>gi|284030440|ref|YP_003380371.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283809733|gb|ADB31572.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 508

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   I    +    T + LA   G   ++ N+ ++          + E + +I  A 
Sbjct: 8  RIGNLIRDARKHRGWTQTQLADVLGTSQSAVNRIEKGHQN-----LTLEMLARIGEAL 60


>gi|254450252|ref|ZP_05063689.1| putative phage repressor [Octadecabacter antarcticus 238]
 gi|198264658|gb|EDY88928.1| putative phage repressor [Octadecabacter antarcticus 238]
          Length = 218

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 57/222 (25%), Gaps = 16/222 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              ID    R  L+ +  +R A  +P+     +     G  +  +  ++ ++    +   
Sbjct: 1   MSIIDAALLRKGLSAAAASRLAVGNPSLIKNMRN--KTGNPKRFNAHALKQLADVLDLEF 58

Query: 70  CQLLDLPFSDGR---------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                   +                                  + S   P       V +
Sbjct: 59  YFGDARTQTVVHLPAGFAERTIEPLAAATARQEALEMGFLPIPYHSAALPNFRGTAPVAL 118

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                  + + A              M+P    G + +L+++      D +      G  
Sbjct: 119 ARQWLTASTLVA--ETLAFLPVVTDDMIPTLTIGALALLDTSDVDLHDDGIWALALKGRY 176

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE---WIARIL 219
           V   +       + L       PV   + +++     + +++
Sbjct: 177 VFARIQRPSPNMLVLKGDKPNQPVQVFKDAELRTLKVLGKVV 218


>gi|197284169|ref|YP_002150041.1| fimbrial operon regulator [Proteus mirabilis HI4320]
 gi|227357957|ref|ZP_03842299.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
 gi|194681656|emb|CAR40714.1| fimbrial operon regulator [Proteus mirabilis HI4320]
 gi|227161692|gb|EEI46724.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
          Length = 106

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I +  +    T S LA K G+    F++ +R   +    +     + K L      
Sbjct: 15 VGKRIQKRRKELGYTGSQLAAKLGVSQQQFSRYERGLNKIDLTYLVL--LAKFLNTPIYW 72

Query: 69 ICQLL 73
            +  
Sbjct: 73 FFEDC 77


>gi|317131914|ref|YP_004091228.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469893|gb|ADU26497.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 118

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/107 (8%), Positives = 25/107 (23%), Gaps = 5/107 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+I   +  + E   L+ + +A   G    + N+ +          P    +       +
Sbjct: 2   KEIGNRLRALREGVKLSQAKIANLVGTTQATINRYETGVS-----SPPLNVLIWYADHFD 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            ++  +                +                    P  +
Sbjct: 57  VSMDYIFARTEKPQGKLYDYRPKFIESNEEFKQFLEMCFDPTSPMND 103


>gi|226305077|ref|YP_002765035.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226184192|dbj|BAH32296.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
           PR4]
          Length = 168

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E   ++   LA+ AG+     ++ +R       R PS + + +I      
Sbjct: 36  DIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERG-----LRKPSADVLAQIAKGLRV 90

Query: 68  TICQLLDLPFSDGRTTEKKEK 88
           +   L        +      +
Sbjct: 91  SSEVLYVQAGYLEQRPHSPIR 111


>gi|255306587|ref|ZP_05350758.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
          Length = 404

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KI + I  + +  NLT   LA+  G+   + +K +         +P  E +  +    
Sbjct: 2  QIKIGKVIQCLRKERNLTQEQLAKFIGVSTPAVSKWESGNS-----YPDIELLPLLADFF 56

Query: 66 NET 68
          N +
Sbjct: 57 NVS 59


>gi|224283083|ref|ZP_03646405.1| Hypothetical transcriptional regulator [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313140233|ref|ZP_07802426.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132743|gb|EFR50360.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 161

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 7/147 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT--N 66
           I + I  + E   LT S  A +  +   + ++ ++   E     PS + I  I       
Sbjct: 3   IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAE-----PSIDMIRLISTRFEVP 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                 +              +       P     G + +  +  G         +    
Sbjct: 58  MPRLMEMPDNGFCQSCAMPFYRPEDHGTEPDGTRSGDYCNYCYDDGVFLQDYANSDELVA 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                  ++     +  +  M  L   
Sbjct: 118 ACAPMMAESCHISVEQAEDCMSALLPN 144


>gi|197103371|ref|YP_002128749.1| transcriptional regulator, MerR family [Phenylobacterium zucineum
          HLK1]
 gi|196480647|gb|ACG80174.1| transcriptional regulator, MerR family [Phenylobacterium zucineum
          HLK1]
          Length = 120

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K +  AI    ER  LT + LA   GL        +R       R PS  ++  +    
Sbjct: 16 QKSVGRAIRMHRERVGLTQAALAEAVGLTEQYIGVVERGA-----RAPSFRTLEALARTL 70

Query: 66 NETICQLLDLP 76
             +      P
Sbjct: 71 KTPVRDFFPHP 81


>gi|167769004|ref|ZP_02441057.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM
           17241]
 gi|167668644|gb|EDS12774.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM
           17241]
          Length = 136

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 5/100 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+   H+ + + I    E    T   LA +A    +  +K +          P+   + +
Sbjct: 7   MSMKLHRMLGKNIRFWREARGFTQEELAFRAQTSSSYISKMELGKEN-----PTITVLER 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           I  A     C LL          +KK+             
Sbjct: 62  IAKALAIDPCMLLLNTCRCAENAKKKQICDQQPVLTDYQE 101


>gi|163790911|ref|ZP_02185335.1| DNA-binding protein [Carnobacterium sp. AT7]
 gi|159873864|gb|EDP67944.1| DNA-binding protein [Carnobacterium sp. AT7]
          Length = 180

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 36/190 (18%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  +  + NLT   LA +  L     ++ +R         PS E  F IL     
Sbjct: 2   EIGNQIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSV-----PSMEVFFDILEVLGC 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +     D         ++       +        G+    + P  N+     V       
Sbjct: 57  SPKDFFDEKQ----EEQRVVYTKDEITVYEDDEKGYEIKWLVPESNENEMEPV------- 105

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              +   T + + K    S+   +             V  G+  +          K   +
Sbjct: 106 ---FLKLTTNGQFKEFGPSLAETFGY-----------VLEGEICVEIG------LKRYFA 145

Query: 188 RRGRSIDLMS 197
           ++G SI   +
Sbjct: 146 KKGESIYFHA 155


>gi|15895325|ref|NP_348674.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025041|gb|AAK80014.1|AE007708_10 Predicted transcriptional regulator [Clostridium acetobutylicum
           ATCC 824]
 gi|325509470|gb|ADZ21106.1| transcriptional regulator [Clostridium acetobutylicum EA 2018]
          Length = 136

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 1/114 (0%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   E I R+ E    +   L+  + L  T+  + ++    G    P  E++ K+     
Sbjct: 11  ETFGEYIKRIRELRGYSQRKLSTLSDLSNTTICRIEKGSENG-IENPDAETVVKLAEGLK 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                LL           ++  ++           G+ +S           V  
Sbjct: 70  LEKKALLIAAGYLDNENVEETTDLKECIRIALQKLGWINSYNDINEETITYVEF 123


>gi|303327942|ref|ZP_07358381.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861768|gb|EFL84703.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 156

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I    ++  LT   LA K G+   S ++ +R  I      P  E +  + A    +
Sbjct: 50  VGTNIQERRKKLGLTQECLAEKIGVGQQSLSRMERGDI-----APKLERLPDVAATLRCS 104

Query: 69  ICQ 71
           +  
Sbjct: 105 VAD 107


>gi|269104497|ref|ZP_06157193.1| error-prone repair protein UmuD [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161137|gb|EEZ39634.1| error-prone repair protein UmuD [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 79

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNC 200
              GD+L+++ A ++  G  ++ +    +   K L+     S  L   N 
Sbjct: 6   IYDGDLLVVDRAEEIKPGRIVIARI-YDEFTCKRLVRY-DESWWLQPENP 53


>gi|240103181|ref|YP_002959490.1| HTH-type transcriptional regulator, putative [Thermococcus
          gammatolerans EJ3]
 gi|239910735|gb|ACS33626.1| HTH-type transcriptional regulator, putative [Thermococcus
          gammatolerans EJ3]
          Length = 65

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E   LT   LA+  G+   +    ++   +     PS    FKI       I 
Sbjct: 3  NRLRELREAKGLTQEELAKALGVTRQTIIAIEKGKYD-----PSLRLAFKIARFFGLKIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DVFIYEG 64


>gi|227891904|ref|ZP_04009709.1| hypothetical protein HMPREF0545_1403 [Lactobacillus salivarius
          ATCC 11741]
 gi|227866238|gb|EEJ73659.1| hypothetical protein HMPREF0545_1403 [Lactobacillus salivarius
          ATCC 11741]
          Length = 95

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +++ I+   +  N+ P  LA KAG+   + +  K     GR + PS E + KI     
Sbjct: 26 ESMYKIIELRLKEKNMKPRELANKAGISTGTLSDLK----SGRLKKPSFELLEKIADVLE 81

Query: 67 ETICQLLDLPF 77
            +        
Sbjct: 82 MDMNDFRKNEG 92


>gi|90412517|ref|ZP_01220520.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90326554|gb|EAS42960.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 212

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 53/215 (24%), Gaps = 12/215 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I ++A+   ++   L    GL   + ++          R      + +I    N + 
Sbjct: 4   LERIKQLAKIQGISQKQLGESLGLQQGTMSRKLSGKYGIEVRE-----LERIAETLNTS- 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             +  L      T  +    I       S             G+  +   V  +      
Sbjct: 58  --IGYLLTGQIDTGTQATTAITHESSQGSTCTYIPIIHRKDFGSFIDGESVNVVSKRVIP 115

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +  +         + ++      G   +            +    R  +     +    
Sbjct: 116 QHLERDDCLGLFVDNENISQCAPIGSYALATKQATYRPKQPVFASVRDSEPDFYHMTQLA 175

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221
              I   S    +P   V   + +    I+   WA
Sbjct: 176 DGVIFSTSQ-PDFPNLFVNNDEFKVHGYIIQSDWA 209


>gi|89069298|ref|ZP_01156661.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516]
 gi|89045174|gb|EAR51242.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516]
          Length = 202

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 7/162 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  KI  A+ R  +   +T   +A  AGL     ++++R         PS  S+ KI   
Sbjct: 12  TDSKIGAALRRYRKSQGMTLRDVAEGAGLSTGFISQAERDIAV-----PSLSSLRKIAQV 66

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              ++  +L         + + E+ +   +   S +  +        G   ++V + +  
Sbjct: 67  LGVSLQDILPETVPAMEASRRSERRVYSAHPGSSAAMAYERISTTFPGATLSSVIMRQPP 126

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
              + + +   ++     +    +     G+ +IL+    ++
Sbjct: 127 GHRSELQSHDGEEIFFVLEGCVTIE--LDGERIILHPGDSLH 166


>gi|221195204|ref|ZP_03568260.1| transcriptional regulator, xre family [Atopobium rimae ATCC
          49626]
 gi|221185107|gb|EEE17498.1| transcriptional regulator, xre family [Atopobium rimae ATCC
          49626]
          Length = 236

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI + +  + +   LT   LA + G+   + ++ +          P  + + ++      
Sbjct: 5  KIGKVLQELRKEKGLTQEQLAEQMGVTRRTVSRWETGSN-----MPDLDILMELSDFYAV 59

Query: 68 TICQLLD 74
           + ++L 
Sbjct: 60 DLREILC 66


>gi|200390330|ref|ZP_03216941.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602775|gb|EDZ01321.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 178

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA  +G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNT 117
           I    N      +  P ++   T   +++  ++                     G    +
Sbjct: 55  IATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHKAGVVEH 124


>gi|42519880|ref|NP_965810.1| hypothetical protein LJ1831 [Lactobacillus johnsonii NCC 533]
 gi|41584170|gb|AAS09776.1| hypothetical protein LJ_1831 [Lactobacillus johnsonii NCC 533]
          Length = 161

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I R+ + +NLT   +A+K  +   + +  +          P  E I  I      ++ 
Sbjct: 5  EQIKRLRKENNLTQEEMAKKLNVTRQTISNWENNRN-----LPDFEIIILIAETFGVSLD 59

Query: 71 QLLDLPFSDGRTTEK 85
          +L+       +  + 
Sbjct: 60 ELILGDKKMNKIEQT 74


>gi|57650163|ref|YP_185761.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus COL]
 gi|87161187|ref|YP_493503.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus USA300_FPR3757]
 gi|161509095|ref|YP_001574754.1| bacteriophage repressor [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|282926178|ref|ZP_06333813.1| bacteriophage repressor [Staphylococcus aureus A9765]
 gi|294850170|ref|ZP_06790906.1| bacteriophage repressor [Staphylococcus aureus A9754]
 gi|15625525|gb|AAL04143.1|AF410775_19 unknown [Staphylococcus aureus subsp. aureus COL]
 gi|57284349|gb|AAW36443.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus COL]
 gi|87127161|gb|ABD21675.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus USA300_FPR3757]
 gi|160367904|gb|ABX28875.1| bacteriophage repressor [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|282592319|gb|EFB97336.1| bacteriophage repressor [Staphylococcus aureus A9765]
 gi|294822944|gb|EFG39377.1| bacteriophage repressor [Staphylococcus aureus A9754]
 gi|315197246|gb|EFU27584.1| bacteriophage repressor [Staphylococcus aureus subsp. aureus
          CGS01]
 gi|329313560|gb|AEB87973.1| Bacteriophage repressor [Staphylococcus aureus subsp. aureus
          T0131]
          Length = 110

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 21/45 (46%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            ++ +I   I    +  N++ S LAR+ G+  ++ ++      E
Sbjct: 1  MRTNDEIITIIKTSMKEQNMSLSELARRVGVAKSAVSRYLNLTRE 45


>gi|329767803|ref|ZP_08259319.1| hypothetical protein HMPREF0428_01016 [Gemella haemolysans M341]
 gi|328838904|gb|EGF88498.1| hypothetical protein HMPREF0428_01016 [Gemella haemolysans M341]
          Length = 245

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 26/233 (11%)

Query: 11  EAIDRMAERHNLTPSGLARK-------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + + ++    NL P  + R+         +     N S                + K L 
Sbjct: 8   DRLKQIMSERNLRPIDILRQSEYYQKEMNIKLNKVNLSHYISGRNEPNKEKVRLLAKTLK 67

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----TGNKWNTVG 119
            + + +        +    +E  +    +           +    +P     GN  +   
Sbjct: 68  VSEQWLNGFDAPKDAVLTKSELYKHFDMVNQSDKIALDVKYLEKKYPNDTTIGNIISNYD 127

Query: 120 VPEIRSP----------HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
             E +                Y   + D      D SMLPLYR  + L++        G+
Sbjct: 128 KLEDKQRQSLLQYSDILLEASYQADSYDIVATMMDNSMLPLYRTDERLMVTFGYDFKYGE 187

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARIL 219
             LI+      + KV       SI L+ +N  YPV T+ +      + I +I+
Sbjct: 188 IYLIECDKDIYIRKVFY--NEYSIKLVPINDEYPVITISLPLEKHFKIIGKIV 238


>gi|317495181|ref|ZP_07953551.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424]
 gi|316914603|gb|EFV36079.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424]
          Length = 181

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 9/122 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + R+  + NLT   L  +  L     ++ +R         PS E+ F IL      
Sbjct: 4   IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLA-----SPSMETFFNILEVLGCA 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                D   +  +     E +            G+  + + P  N+     +      H+
Sbjct: 59  PKDFFDKESTSQKVYYSLEDQTSYEETDE----GYILTWLVPESNEKEMESLILRLEKHS 114

Query: 129 GI 130
             
Sbjct: 115 NY 116


>gi|266619976|ref|ZP_06112911.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479]
 gi|288868440|gb|EFD00739.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479]
          Length = 260

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 40/173 (23%), Gaps = 7/173 (4%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           + +   L+   LA +      + +K +         +P TE + K+       +  LL  
Sbjct: 10  LRKEKGLSQEALAEQLNTTRQAISKWENNHG-----YPETEKLLKLSDIFQVPVDFLLKE 64

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
                            +      S    +         W   G+P    P         
Sbjct: 65  TTGIENQNSGNIYVTREMAVSYLSSESMVNRYFGLGTAAWLLGGIPYNMLPDGDPLKTPG 124

Query: 136 QD-TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA-KVLI 186
                       ++  +++ D   +     +        +     +   K   
Sbjct: 125 IAVFLLAGICIWIVGAFKENDTHKILKQEPLILDHVFYQELSAQYMQIKKRYQ 177


>gi|226322466|ref|ZP_03797984.1| hypothetical protein COPCOM_00237 [Coprococcus comes ATCC 27758]
 gi|225209083|gb|EEG91437.1| hypothetical protein COPCOM_00237 [Coprococcus comes ATCC 27758]
          Length = 45

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          KKI   + +  +  NLT   LA K G+   + ++ +  G 
Sbjct: 4  KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGGS 43


>gi|333022876|ref|ZP_08450940.1| putative regulatory protein [Streptomyces sp. Tu6071]
 gi|332742728|gb|EGJ73169.1| putative regulatory protein [Streptomyces sp. Tu6071]
          Length = 184

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 36/131 (27%), Gaps = 5/131 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + +   +T + L+   G+  ++ ++ +        R P+ E +  +  A    +
Sbjct: 2   GERLRGLRKERGMTLAALSTSTGISVSTLSRLESG-----LRRPTLELLLPLARAHRVAL 56

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +L+            +          P                  +    P     +  
Sbjct: 57  DELVGTRPVADPRVRAEPIVRHHRRMYPLSRHPGGVQAYRMVIEGGSRDPEPRTHEGYEW 116

Query: 130 IYAIQTQDTRH 140
           +Y +  +    
Sbjct: 117 MYVLHGRLRVV 127


>gi|313106352|ref|ZP_07792591.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310879093|gb|EFQ37687.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 195

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 14/178 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+  +  L+   LAR A +        +   +       S  ++ +I AA  
Sbjct: 22  EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 76

Query: 67  ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                L+  P +D              E    LL   P+       +     G     V 
Sbjct: 77  VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 134

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            P+       +  I+ +           +                VN GD ++   R 
Sbjct: 135 EPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRN 192


>gi|264678746|ref|YP_003278653.1| DNA polymerase V [Comamonas testosteroni CNB-2]
 gi|262209259|gb|ACY33357.1| DNA polymerase V [Comamonas testosteroni CNB-2]
          Length = 136

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  +    SM       GDI++++  ++   G  ++      ++V + L S  G +
Sbjct: 43  PKATFLLRVAGPSMQEHGIDDGDIVVVDRELRARDGSIVVAVVER-ELVIRALDSD-GDT 100

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
             L +    YP           I  ++
Sbjct: 101 CKLRAGAPTYPDIVPPEGQTLEIWGVV 127


>gi|167761228|ref|ZP_02433355.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704]
 gi|167660894|gb|EDS05024.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704]
          Length = 234

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +FS     E +    ++ ++T   LA +  +   + +K +         +P  E I +
Sbjct: 1   MAAFS-----ENLQFYRKKADMTQEELAERMEVSRQTISKWESGAT-----YPEMEKILQ 50

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
           +       +  L+    ++    +  + +     F  + + G 
Sbjct: 51  LCEMFRCDMDTLIRGDATESFAEDNAQYDQHKNEFSKAVAFGV 93


>gi|167590249|ref|ZP_02382637.1| putative transcription regulator protein [Burkholderia ubonensis
           Bu]
          Length = 217

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 49/191 (25%), Gaps = 18/191 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIF 59
           +++I   +  +      T   LA ++G+  +  +  +R           +       S+ 
Sbjct: 16  NERIARRVRALRATRGHTLDALAARSGVSRSMISLIERGAASPTAVVLDKLAAGLGVSLA 75

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNT 117
            +     +       +  +                  P G           FP G +   
Sbjct: 76  SLFDGAPDDAPAQPLVRRAQQAQWRDPASGYVRRNLSPPGWPSPIQLVEVTFPAGARVAY 135

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL-------ILNSAIQVNCGDR 170
                  + H  ++ I+ +     T    +    R GD L       ++ S         
Sbjct: 136 EAAGRESAVHQQVWVIRGRIDV--TLGDQV-HALRDGDCLAMRLDQPLVFSNPTSRPAHY 192

Query: 171 LLIKPRTGDIV 181
           +++        
Sbjct: 193 VVVLCEGHAAT 203


>gi|82750708|ref|YP_416449.1| transcriptional regulator [Staphylococcus aureus RF122]
 gi|82656239|emb|CAI80652.1| probable transcriptional regulator [Staphylococcus aureus RF122]
          Length = 179

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 56/197 (28%), Gaps = 35/197 (17%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +    NLT   LA++  L     ++ +          PS E+   I+     
Sbjct: 2   NIGNKIKNLRRIKNLTQEELAKRTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126
           T  +      ++    +K+E+ I   Y       G+  + +    N+++   +     P 
Sbjct: 57  TPSEFFKDSENENVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111

Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183
             +      ++    +                      I +N G  +        +  K 
Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEIYQAQEEDVLYFKA 154

Query: 184 ----VLISRRGRSIDLM 196
                L +       ++
Sbjct: 155 RDNHRLSNESNNETRIL 171


>gi|330821781|ref|YP_004350643.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3]
 gi|327373776|gb|AEA65131.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3]
          Length = 186

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H +I E +  + +    +   LA  +G+  ++ +  +R         P+   + K+  A 
Sbjct: 4   HDRIAERLRALRDARGWSLETLAEHSGVSRSNISLIERGQS-----SPTAVVLDKLATAL 58

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
              +  L          +         L+  P+   
Sbjct: 59  AVPLSSLFGESGESEAPSPIARAADQPLWTDPASGY 94


>gi|313901693|ref|ZP_07835124.1| transcriptional regulator, XRE family [Thermaerobacter
          subterraneus DSM 13965]
 gi|313468044|gb|EFR63527.1| transcriptional regulator, XRE family [Thermaerobacter
          subterraneus DSM 13965]
          Length = 216

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I  +  +  ++   LAR++G+     ++ +        R PS + + +I AA   
Sbjct: 2  EVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPA----RKPSVDVVLRIAAALEV 57

Query: 68 TICQ 71
           + +
Sbjct: 58 DLAE 61


>gi|313900820|ref|ZP_07834310.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312954240|gb|EFR35918.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 162

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 2/104 (1%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K +   I  + +   +T   LA K G+ P + +K +          P    +      + 
Sbjct: 2   KALGTKISELRKARGMTQDELADKMGVSPQAVSKWENDLSM--PDLPVLIELSDFFHISL 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           +   +            ++K+ E   L        G       P
Sbjct: 60  DDFLKEKVQTVELLPEDKRKDIEQMFLRVYVDSENGDRVRVNLP 103


>gi|258516973|ref|YP_003193195.1| helix-turn-helix domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780678|gb|ACV64572.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 383

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 35/136 (25%), Gaps = 5/136 (3%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              K I   + R+ E    T S +A  AG+   ++   +          P   ++  I +
Sbjct: 1   MDQKIIGANLRRIREAKGWTQSQVADLAGISRVAYRNIENGNTT-----PKVSTLQNIAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A    +  L     +      +  K++       +    + D   +      +       
Sbjct: 56  AVGVKLQDLFIPVRTLKGVRFRASKKMNSRDNILTEVAHWLDDFNYLERLLNDHKDYQFE 115

Query: 124 RSPHNGIYAIQTQDTR 139
                        D  
Sbjct: 116 DLTRELSSMPPGDDRA 131


>gi|228959512|ref|ZP_04121199.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228800192|gb|EEM47122.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 373

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 14/194 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKTIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             N +I +L+      G+   K         F                   ++   +   
Sbjct: 56  YFNISIDELICYTPQMGQEDIKNLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPL--- 112

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182
                 +  +              + +  +   L      +   GD  L+ +  T     
Sbjct: 113 ---LLQMGLLFINHHMLTGDTDKRIEILEEAMSLFSRVQEE--SGDVSLVKEAVTFQATC 167

Query: 183 KVLISRRGRSIDLM 196
            ++++R    + L+
Sbjct: 168 YLILNRPNEVLQLL 181


>gi|221369865|ref|YP_002520961.1| hypothetical protein RSKD131_4028 [Rhodobacter sphaeroides KD131]
 gi|221162917|gb|ACM03888.1| Hypothetical Protein RSKD131_4028 [Rhodobacter sphaeroides KD131]
          Length = 222

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 61/208 (29%), Gaps = 22/208 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +       +  + E   +    L+  AG+  +      R         P   + + 
Sbjct: 1   MQKKTLDAFVRGLQIVMEAEGIKMKPLSVAAGMGESGVRDLIRNES-----SPKVANAYA 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      T+ +++ +  +           I +     +G+           G+    V  
Sbjct: 56  LARELGRTVDEIIQIGMTGDLNARPAHAPIAVAGCVGAGARVDLLDAYEK-GDGMYHVAR 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI------QVNCGDRLLIK 174
           P    PH             + +  SM+PLYR G +L    A       +       + +
Sbjct: 115 PPQLKPHG--------IVAVEVKGESMMPLYRPGSVLFYTRAAAEGVPVEALNT-PCVCE 165

Query: 175 PRTGDIVAKVLISRR-GRSIDLMSLNCC 201
              G    KV+       +  L+SLN  
Sbjct: 166 DADGRAWLKVVKVGSQEGTFSLLSLNPD 193


>gi|218281756|ref|ZP_03488112.1| hypothetical protein EUBIFOR_00680 [Eubacterium biforme DSM 3989]
 gi|218217207|gb|EEC90745.1| hypothetical protein EUBIFOR_00680 [Eubacterium biforme DSM 3989]
          Length = 83

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          KKI   I    ++   T   LA K G+   + ++ +    + +
Sbjct: 39 KKIGAFIAMNRKKKGYTQEQLAEKLGVTNKTISRWENGVSQTK 81


>gi|326329678|ref|ZP_08195999.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325952443|gb|EGD44462.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 185

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 6/130 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K++   I  +      T   LA  A + P++ ++ +        R  S E +  +     
Sbjct: 6   KQVGPRIRAIRHSKGWTLEQLAAMAEMSPSTLSRLESG-----KRQASLELLIPLTRHLG 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +   L  P        +       +   P    G   S    T      V  P +   
Sbjct: 61  VGL-DSLVTPSVPDPRVRRPVIRRDGMEIAPLTPEGSPVSTFKITYEPVTEVPEPRVHDG 119

Query: 127 HNGIYAIQTQ 136
           +  +Y +  +
Sbjct: 120 YEWLYVLSGK 129


>gi|317506959|ref|ZP_07964728.1| hypothetical protein HMPREF9336_01099 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316254717|gb|EFV14018.1| hypothetical protein HMPREF9336_01099 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 148

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            A+    ER  +T + LAR  GL  ++  K +          P+ E++ K  AA  
Sbjct: 11 LSALAHARERRRMTRADLARVTGLSTSTIQKWESGAA-----SPNIETLAKAAAALG 62


>gi|284007818|emb|CBA73695.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 137

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K + E I    +   L+   LA   G+   S ++ +R         P  E++  
Sbjct: 1  MNM---KTLGERIKARRQELKLSQRALASILGIAHVSISQWERNEST-----PKGENLMA 52

Query: 61 ILAATNETICQLLDLPFS 78
          +    +     L +   +
Sbjct: 53 LAKTLHCEPSWLFEEQGN 70


>gi|307324538|ref|ZP_07603745.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889782|gb|EFN20761.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 410

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  S   + + + R+ +  +LT   LA +AG+   +  + ++    G  R  + + +  
Sbjct: 1  MTDLS---VGKRLARLRDIRDLTQEQLADRAGVSVDTIRRLEQGTQRG-ARIATYQKLAG 56

Query: 61 ILA 63
           L 
Sbjct: 57 ALD 59


>gi|282866826|ref|ZP_06275862.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282558318|gb|EFB63884.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 509

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA       ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|256160334|ref|ZP_05458027.1| hypothetical protein BcetM4_15110 [Brucella ceti M490/95/1]
 gi|256255538|ref|ZP_05461074.1| hypothetical protein BcetB_14887 [Brucella ceti B1/94]
 gi|261222746|ref|ZP_05937027.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|265998708|ref|ZP_06111265.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260921330|gb|EEX87983.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|262553332|gb|EEZ09166.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 470

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 4  FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S +KI+    I R+     LT + +A   G+ P+  N  +R       R  + + + K+
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55

Query: 62 L 62
           
Sbjct: 56 A 56


>gi|239907891|ref|YP_002954632.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
 gi|239797757|dbj|BAH76746.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
          Length = 107

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H+ + + I  + ++  LT   LA KA L      + +R         P+ ES+  +  A 
Sbjct: 5  HEILGKRIQSLRKKAGLTQLELAEKANLSLKHLGEIERGRGN-----PTLESLHNLSVAL 59

Query: 66 NETIC 70
          + ++ 
Sbjct: 60 DISLM 64


>gi|228984922|ref|ZP_04145092.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774872|gb|EEM23268.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 181

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKLEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + K++K I         S  F  +           + VP   +  
Sbjct: 63  SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTASS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
             +   + ++       
Sbjct: 117 ENVLEHKGEELAFVLDG 133


>gi|172036041|ref|YP_001802542.1| hypothetical protein cce_1126 [Cyanothece sp. ATCC 51142]
 gi|171697495|gb|ACB50476.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 381

 Score = 48.2 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 4/115 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-PSTESIFKILAATNET 68
            E I+ + E   +T S LA + G    + N+  +             E + KI A     
Sbjct: 24  GETIEEILEEKGMTQSELAERMGRPKKTINEIIKGKAAITPETALQLELVLKIPANFWNN 83

Query: 69  ICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             QL     +     ++   K   +  + +      G+  +           +  
Sbjct: 84  REQLYRDYLARQEENKRLKEKVAWLEKIPYQAMIKLGWIRNFNNKVEQLRELLDF 138


>gi|300023570|ref|YP_003756181.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525391|gb|ADJ23860.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 472

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 5/100 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + R+ E   LT   LAR   L P+  N+ ++       R  +   + KI +     +  
Sbjct: 9   RLKRLREERGLTQVALARALELSPSYLNQIEKNQ-----RPLTVPILLKINSVFGVDVQL 63

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             +   +      K     P L    + +     +   P 
Sbjct: 64  FSEDEEARLIADLKDVLADPGLGEHVALTEIREIAANMPA 103


>gi|229084977|ref|ZP_04217229.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44]
 gi|228698293|gb|EEL51026.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44]
          Length = 193

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/197 (10%), Positives = 53/197 (26%), Gaps = 19/197 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I ++     +T   L+ K+ L     ++ +R          S E +  +      
Sbjct: 2   NIGMEIKKLRAEKGITLKELSEKSELSVGFLSQLERGLTT--IAVDSLEKLADVFEVHLT 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                          + ++E    +       S                   +P+ +   
Sbjct: 60  HFFDYPLKRKDMVLRSYEQEIMDSVEGGCIKYSLSTNLENKQLVPRLIEI--LPQKKDEE 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRLLIKPRTGDIVAKVLI 186
              Y  + ++  +  +             + +N    +V  GD +         +     
Sbjct: 118 ILSYKHEGEEFIYVLEGIL---------TIYINGKRHEVYPGDSV----HMDSNIVHNWA 164

Query: 187 SRRGRSIDLMSLN-CCY 202
           +   + + L+++N   Y
Sbjct: 165 NYTNKKVKLIAVNTPNY 181


>gi|119487541|ref|ZP_01621151.1| subunit S of type I restriction-modification system [Lyngbya sp.
          PCC 8106]
 gi|119455710|gb|EAW36846.1| subunit S of type I restriction-modification system [Lyngbya sp.
          PCC 8106]
          Length = 72

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     KK+   I ++     L+   LA KA L  T     +R       R  S ++I  
Sbjct: 1  MKHEPRKKLGSNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGE-----RNVSLDNIVA 55

Query: 61 ILAATN 66
          I  A  
Sbjct: 56 IAHALG 61


>gi|328884992|emb|CCA58231.1| signal peptidase protein [Streptomyces venezuelae ATCC 10712]
          Length = 144

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD L+++   ++  G   +++   +   ++ K LI RR     ++  
Sbjct: 20  EVTGVSMVPTLLHGDQLLVHYGARLRPGCVAVVRHPLQQDLLIVKRLIERRDGGWWVLGD 79

Query: 199 NCC 201
           N  
Sbjct: 80  NPD 82


>gi|251779839|ref|ZP_04822759.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243084154|gb|EES50044.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 167

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            I   I  + E  N++ S LARK  + P      +          PS E + KI  A 
Sbjct: 2  NTIGNKIKTLRESKNISKSELARKIEVSPAYITMLENGTKT----NPSLEILNKISFAL 56


>gi|218288780|ref|ZP_03493043.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241138|gb|EED08314.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 167

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I ++ +   LT + LA +A L  ++    +        R P   ++ +I  A    
Sbjct: 10  VGERIAQLRKERGLTQAKLAERARLSTSAIAMYE-----TNRRQPDERTLAQIAEALGVE 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           + Q+     +      ++ K  P    P   +    +          
Sbjct: 65  MAQIAPHLTAAAAPASRQAKPAPNESHPDDRAATAPEPNREEREVGD 111


>gi|212697471|ref|ZP_03305599.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675470|gb|EEB35077.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 140

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 8/124 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ E  NLT   LA+  G+   + ++ +    + R R        K+     E +   
Sbjct: 15  LRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYR--------KVYDKLAEVLDTS 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            D   +D        +E                      G + +      I       Y 
Sbjct: 67  HDYLVTDEDNFILDAREKYGYKGAKDAKEMVDGVIGLMAGGEIDEKDKKAILDSIQEAYY 126

Query: 133 IQTQ 136
           I   
Sbjct: 127 IAKN 130


>gi|281491984|ref|YP_003353964.1| phage repressor [Lactococcus lactis subsp. lactis KF147]
 gi|281375693|gb|ADA65197.1| Phage protein, repressor [Lactococcus lactis subsp. lactis KF147]
          Length = 189

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I   I    +   ++ +  AR+AG+ PT+ +   +         P+  ++ KI     
Sbjct: 17 ISNNIRTKIKEEGISQAEFARRAGIPPTTLSGYIKGVTR-----PNAGNLQKISDTLG 69


>gi|182435303|ref|YP_001823022.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326775942|ref|ZP_08235207.1| transcriptional regulator, XRE family [Streptomyces cf. griseus
          XylebKG-1]
 gi|178463819|dbj|BAG18339.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326656275|gb|EGE41121.1| transcriptional regulator, XRE family [Streptomyces cf. griseus
          XylebKG-1]
          Length = 509

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA       ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|23502476|ref|NP_698603.1| Cro/CI family transcriptional regulator [Brucella suis 1330]
 gi|148559184|ref|YP_001259476.1| Cro/CI family transcriptional regulator [Brucella ovis ATCC
          25840]
 gi|161619553|ref|YP_001593440.1| hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365]
 gi|163843861|ref|YP_001628265.1| hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445]
 gi|254702330|ref|ZP_05164158.1| hypothetical protein Bsuib55_15923 [Brucella suis bv. 5 str. 513]
 gi|254704859|ref|ZP_05166687.1| hypothetical protein Bsuib36_13258 [Brucella suis bv. 3 str. 686]
 gi|254710644|ref|ZP_05172455.1| hypothetical protein BpinB_10311 [Brucella pinnipedialis B2/94]
 gi|254714828|ref|ZP_05176639.1| hypothetical protein BcetM6_16109 [Brucella ceti M644/93/1]
 gi|254717885|ref|ZP_05179696.1| hypothetical protein BcetM_16061 [Brucella ceti M13/05/1]
 gi|256032137|ref|ZP_05445751.1| hypothetical protein BpinM2_16082 [Brucella pinnipedialis
          M292/94/1]
 gi|256061658|ref|ZP_05451797.1| hypothetical protein Bneo5_15035 [Brucella neotomae 5K33]
 gi|256370026|ref|YP_003107537.1| transcriptional regulator, Cro/CI family [Brucella microti CCM
          4915]
 gi|260565903|ref|ZP_05836373.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261219732|ref|ZP_05934013.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261318215|ref|ZP_05957412.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261322622|ref|ZP_05961819.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261325667|ref|ZP_05964864.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261752894|ref|ZP_05996603.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261755553|ref|ZP_05999262.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|265989247|ref|ZP_06101804.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|23348469|gb|AAN30518.1| transcriptional regulator, Cro/CI family [Brucella suis 1330]
 gi|148370441|gb|ABQ60420.1| transcriptional regulator, Cro/CI family [Brucella ovis ATCC
          25840]
 gi|161336364|gb|ABX62669.1| Hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365]
 gi|163674584|gb|ABY38695.1| Hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445]
 gi|256000189|gb|ACU48588.1| transcriptional regulator, Cro/CI family [Brucella microti CCM
          4915]
 gi|260155421|gb|EEW90501.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|260924821|gb|EEX91389.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261295312|gb|EEX98808.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261297438|gb|EEY00935.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261301647|gb|EEY05144.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261742647|gb|EEY30573.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261745306|gb|EEY33232.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|264661444|gb|EEZ31705.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 470

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 4  FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S +KI+    I R+     LT + +A   G+ P+  N  +R       R  + + + K+
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55

Query: 62 L 62
           
Sbjct: 56 A 56


>gi|332527737|ref|ZP_08403778.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332112135|gb|EGJ12111.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 12/125 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +    +   L+ + LA  +GL        ++          S   + ++  A    
Sbjct: 18  VGQNLRAARQNAGLSQAALAEASGLSRRMIVALEQGDTN-----ISLSRLDRLAEALGVG 72

Query: 69  ICQLLDLPFSDG-------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
              L+  P +              ++    L    P+       +     G +++    P
Sbjct: 73  FADLVRDPAAQTLRLDAVAWRGRHEDSVAVLQASVPARHEAQLWAWTLAPGERYDAEPDP 132

Query: 122 EIRSP 126
           E    
Sbjct: 133 EGWHE 137


>gi|291551052|emb|CBL27314.1| Predicted transcriptional regulator [Ruminococcus torques L2-14]
          Length = 101

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 147 MLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVD- 205
           M PLY  GD+  +     +  G+  +     G+   K L       + L+SLN  Y    
Sbjct: 1   MEPLYHTGDVAWIQKKDSLANGEIGI-FYLNGNTYIKELHDEPDG-VYLISLNQKYRPIQ 58

Query: 206 TVEMSDIEWIARIL 219
            +E    +   +++
Sbjct: 59  VLESDSFKIFGKVI 72


>gi|291301862|ref|YP_003513140.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290571082|gb|ADD44047.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 76

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      ++   ID +     +T + LAR+ G+   + +  K     GR +     ++  
Sbjct: 1  MDEPKRPEVRVTIDALLAERGMTATELARRVGITLANLSILKN----GRAKAIRLSTLAA 56

Query: 61 ILAATNETICQ 71
          +          
Sbjct: 57 VCRELECQPGD 67


>gi|229490145|ref|ZP_04383992.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
           SK121]
 gi|229322893|gb|EEN88667.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
           SK121]
          Length = 168

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E   ++   LA+ AG+     ++ +R       R PS + + +I      
Sbjct: 36  DIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERG-----LRKPSADVLAQIAKGLRV 90

Query: 68  TICQLLDLPFSDGRTTEKKEK 88
           +   L        +      +
Sbjct: 91  SSEVLYVQAGYLEQRPHSPIR 111


>gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991]
 gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991]
          Length = 110

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + ++  L+ + L +  G+   + +  +    E     P+ ++I K+  A +  + 
Sbjct: 15 EKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSE-----PNLKTINKLCEALDVPLR 69

Query: 71 QLLDLPFSDGR 81
            ++    D +
Sbjct: 70 YFINEERVDYQ 80


>gi|332980703|ref|YP_004462144.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332698381|gb|AEE95322.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 130

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I ++     L+   +A   G+D T++NK +    +     P  +++ K+      +
Sbjct: 5  EIIKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQ-----PDFDTVQKLADFFGVS 57


>gi|325263078|ref|ZP_08129813.1| DNA-binding protein [Clostridium sp. D5]
 gi|324031471|gb|EGB92751.1| DNA-binding protein [Clostridium sp. D5]
          Length = 207

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 7/113 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +   LT   L+ + G++  S +K +R        +P+ +++ K+    + T
Sbjct: 11  LGHNIQVIRKLKGLTQQELSEQIGINLQSLSKIERGIN-----YPTFDTLQKLAEILDVT 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             +   L      T+  +   +  L      +            +    +   
Sbjct: 66  PNE--LLAGELKSTSHIEANILKFLEHEERLNVELAHGQYDNPLDADEWIEYE 116


>gi|299768445|ref|YP_003730471.1| Helix-turn-helix family protein [Acinetobacter sp. DR1]
 gi|298698533|gb|ADI89098.1| Helix-turn-helix family protein [Acinetobacter sp. DR1]
          Length = 182

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 67/194 (34%), Gaps = 21/194 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + ++R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N
Sbjct: 6   EIIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L++ P +  +     +            +            + +  +  P     
Sbjct: 61  IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +  + + + +     +  +++ L  +   L +        GD +           K + 
Sbjct: 120 LSEPHPVGSVEHIIVVEGKALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166

Query: 187 S--RRGRSIDLMSL 198
                G    L+S 
Sbjct: 167 RALETGTKALLISE 180


>gi|302552372|ref|ZP_07304714.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
 gi|302469990|gb|EFL33083.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
          Length = 195

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +   + + +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MATLNVGNLGDYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +  A   +   L           ++ E E   +    
Sbjct: 56 VAKALRISAETLYVRAGILDAERDRDEVETRAVILAD 92


>gi|326390754|ref|ZP_08212307.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
 gi|325993148|gb|EGD51587.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
          Length = 130

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + +  + +  NLT   LA+  G+  ++    +        + P  E++ KI    N +
Sbjct: 5  DRLKELRKEKNLTQGDLAKILGISRSTIAGYE-----TERKEPDYETLKKIADFFNVS 57


>gi|229592426|ref|YP_002874545.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229364292|emb|CAY52026.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 81

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +++ + I  + +   L+ S LA + G+  ++ +  +   I        T  +  IL    
Sbjct: 2  EELGKLIRSLRKTAGLSQSQLAHRHGMSRSTISGIENNTIS----EVGTRKVAAILEGLG 57

Query: 67 ET 68
            
Sbjct: 58 YE 59


>gi|170016442|ref|YP_001727361.1| transcriptional regulator [Leuconostoc citreum KM20]
 gi|169803299|gb|ACA81917.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
          Length = 122

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 5/108 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I  + ++  LT  GLA K      +  K +        R P    I  I    + T+ 
Sbjct: 6   DRIKELRKQKQLTQQGLADKIEASRDTITKYENG-----RRIPKLAMISLIADVLDTTVD 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            L     +  +T+              +     +      T      +
Sbjct: 61  YLQGKTDNALKTSHNGSNNGDEQPLTDAQKQVAYFIDPSATQEDIEQI 108


>gi|222054772|ref|YP_002537134.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221564061|gb|ACM20033.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 181

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 14/137 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E + R+   ++LT   LA +A L     ++ +          PS  ++  I+     
Sbjct: 2   KIGERLKRLRMINSLTQEELASRADLTKGYISQLENDAT-----SPSIATLKDIIDVFGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEI--------PLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++ +       +     K  +           +    P+      D  +           
Sbjct: 57  SMQEFFSETIDEDVVYGKDYRVQASGDDEKIRVELLIPAAQNRDMDPAMVTLEPGEEMEE 116

Query: 120 VPEIRSPHNGIYAIQTQ 136
            P         + +  +
Sbjct: 117 QPF-HEGEEFGFVLSGK 132


>gi|319936228|ref|ZP_08010648.1| HTH domain-containing protein [Coprobacillus sp. 29_1]
 gi|319808802|gb|EFW05335.1| HTH domain-containing protein [Coprobacillus sp. 29_1]
          Length = 151

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +  +  +T   LAR+  +   + +  +R   E     P    + KI       +
Sbjct: 11 GKQIRHLRTQAGMTQEELARELNVTRQALSNWERDVNE-----PDLNMLKKICFLFGVYM 65

Query: 70 CQLLDLPFSDGRTTEKKEKEI 90
                  +   T EKKEK+ 
Sbjct: 66 DDFAKGVITKMETYEKKEKQQ 86


>gi|295401783|ref|ZP_06811748.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312112235|ref|YP_003990551.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1]
 gi|294976150|gb|EFG51763.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311217336|gb|ADP75940.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1]
          Length = 97

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    ++ N+T   LA + G+  ++  + +          P  E++FKI  A N  
Sbjct: 26 IAAQIKTRRKQLNMTQQELADRIGVPKSTIGRIEAGLT-----SPRVETLFKISQALNTP 80

Query: 69 ICQLLDLPFSDGRTTE 84
                         +
Sbjct: 81 FIIDGTSRQDHNLHVQ 96


>gi|146311912|ref|YP_001176986.1| XRE family transcriptional regulator [Enterobacter sp. 638]
 gi|145318788|gb|ABP60935.1| transcriptional regulator, XRE family [Enterobacter sp. 638]
          Length = 145

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++  A+D       ++ S L R+ G++  + +     G      +P  E +     A 
Sbjct: 15 EERLLRALD----EAGISQSELGRRVGVNSQTVSNWCNTGN-----FPRKEKLALFPKAL 65

Query: 66 NETICQLLDLPF 77
           + +        
Sbjct: 66 GKPLYWFFLTDE 77


>gi|116688944|ref|YP_834567.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|116647033|gb|ABK07674.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          HI2424]
          Length = 132

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++  AI        LT + LA    L+  + ++ +R       R P+   + ++  A N 
Sbjct: 20 RVGTAIAEQRRARGLTQAKLAEMIDLEQEAVSRWERGT-----RVPTLHRLQQLSDALNC 74

Query: 68 TICQ 71
          ++ Q
Sbjct: 75 SVDQ 78


>gi|326388271|ref|ZP_08209874.1| transcription regulator, putative [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326207437|gb|EGD58251.1| transcription regulator, putative [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 197

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 1  MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          MT  S     + + +  +  R  L+   LA +A +     ++ +   I      PS  S+
Sbjct: 1  MTDTSGDVFDVGQRLLELRRRAGLSQRALAARADVPHAQISQIESNRI-----SPSIASL 55

Query: 59 FKILAATNETICQLLDLPF 77
           +IL     ++ +  +   
Sbjct: 56 RRILGGLGLSMAEFFEPER 74


>gi|325847068|ref|ZP_08169894.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481040|gb|EGC84085.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 132

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 8/124 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ E  NLT   LA+  G+   + ++ +    + R R        K+     E +   
Sbjct: 7   LRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYR--------KVYDKLAEVLDTS 58

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            D   +D        +E                      G + +      I       Y 
Sbjct: 59  HDYLVTDEDNFILDAREKYGYKGAKDAKEMVDGVIGLMAGGEIDEKDKKAILDSIQEAYY 118

Query: 133 IQTQ 136
           I   
Sbjct: 119 IAKN 122


>gi|260550240|ref|ZP_05824453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406768|gb|EEX00248.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 182

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + + R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N
Sbjct: 6   EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L++ P +  +     E            +            + +  +  P     
Sbjct: 61  IPFARLMEEPSNQVQVIRCGEGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +  + + + +     +  +++ L  +   L +        GD +           K + 
Sbjct: 120 LSEPHPVGSVEHIIVVEGKALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166

Query: 187 S--RRGRSIDLMSL 198
                G    L+S 
Sbjct: 167 RALETGTKALLISE 180


>gi|312109734|ref|YP_003988050.1| hypothetical protein GY4MC1_0611 [Geobacillus sp. Y4.1MC1]
 gi|311214835|gb|ADP73439.1| protein of unknown function DUF955 [Geobacillus sp. Y4.1MC1]
          Length = 388

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 6/122 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +        +T + LA K G+   + ++ ++         PS ESIFK+         
Sbjct: 13  RRLKAARVFRGMTITELADKIGVTRQAVSQFEQGKTP-----PSLESIFKLTNVLQFPRD 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSPHNG 129
                  S         +           +       +F         V  PE+  P   
Sbjct: 68  FFYAEDKSVDYIGNTFFRSNSTATKRLREAQKVRVDFIFDVQQFLEKYVNFPELNLPDTK 127

Query: 130 IY 131
            +
Sbjct: 128 SF 129


>gi|169631162|ref|YP_001704811.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977]
 gi|169243129|emb|CAM64157.1| Possible transcriptional regulator [Mycobacterium abscessus]
          Length = 139

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I    E   ++   LA KAG+     ++ +R       R PS E + +I  A   
Sbjct: 17 DIGGFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRRPSAEVLNQIAKALRV 71

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
          +   L        R+     ++  +
Sbjct: 72 SAEVLYVRAGILDRSDASPVRDAII 96


>gi|126738803|ref|ZP_01754499.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126719984|gb|EBA16691.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 287

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 1   MTSFSHKKIWEA-----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           M +   K++  A     ++R  +   L+ S LAR  G+D ++ ++      +   R P+ 
Sbjct: 1   MQNLIDKRLRAAQFRTRLNRALKDSGLSQSALARATGVDRSTISQLL---TDEGARLPNA 57

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNK 114
             +    +A   +   LL L        E     + +   P +              G K
Sbjct: 58  HVVGACASALGVSADWLLSLSERPESAAELLALSMAMTEAPRALVDERIYEWHREAMGYK 117

Query: 115 WNTVG 119
              V 
Sbjct: 118 IRHVP 122


>gi|300024182|ref|YP_003756793.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526003|gb|ADJ24472.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 213

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 6/158 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +  +  +  L+   LA K+G+      + +          P+   + +I  A   +
Sbjct: 26  VGENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKS-----APTINLLGRIAEALQVS 80

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+  P + G     +++   L       +         P   +   V +    S   
Sbjct: 81  VPSLISHPAAGGTVIVPRDRATVLASSNGGFTCRALFPWGDPQSIEIYEVTIIAHHSEDV 140

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
             +               +     +     L+    + 
Sbjct: 141 AAFE-PGVKKALVVLTGEIELTIAEDSPARLSEGDSII 177


>gi|196231108|ref|ZP_03129968.1| transcriptional regulator, XRE family [Chthoniobacter flavus
          Ellin428]
 gi|196224938|gb|EDY19448.1| transcriptional regulator, XRE family [Chthoniobacter flavus
          Ellin428]
          Length = 224

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I        ++   LA +AGL  T  +  +R       R  S  SI K+  A   ++
Sbjct: 11 GTTIKSKRSELGMSQEELADRAGLHRTYVSDVERGM-----RNVSLISIEKLAHALGLSV 65

Query: 70 CQLLDLPFSDGRTTE 84
           +L +   +     +
Sbjct: 66 WRLFEQASNGTAPDQ 80


>gi|83590463|ref|YP_430472.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
           39073]
 gi|83573377|gb|ABC19929.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC
           39073]
          Length = 300

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 6/137 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+ E+  +T S L+R++G+     ++ +R          S +++ K+ A    +
Sbjct: 73  VGARLRRLREQKGITLSELSRRSGVSLAHISEIERSRSTA-----SLKTLEKLAAVLEVS 127

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               L           K ++    +                  G        P + +  +
Sbjct: 128 TS-SLLRSGQQDSLGAKLKRLREKIGLTQKELAQQVGISHSLIGQIETDRIQPSLSTLSS 186

Query: 129 GIYAIQTQDTRHKTQDT 145
              A+         +D 
Sbjct: 187 LAEALGVSTCYFLMEDD 203



 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
               +   + R+ E+  LT   LA++ G+  +   + +   I+     PS  ++  +  A
Sbjct: 136 QQDSLGAKLKRLREKIGLTQKELAQQVGISHSLIGQIETDRIQ-----PSLSTLSSLAEA 190

Query: 65  TNETICQLLDLPF 77
              + C  L    
Sbjct: 191 LGVSTCYFLMEDD 203



 Score = 36.7 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + ++ E   +    LA +  + P    + ++       R  S  ++ ++ A     
Sbjct: 3  IGEKLKKLREDRGIPLEELADRLDIAPACMVEVEQGT-----RRLSLATLKEVAAILGVD 57

Query: 69 ICQLLDLPFSDGRTT 83
          +    +   +    +
Sbjct: 58 VSYFQEENDNKNDNS 72


>gi|291279081|ref|YP_003495916.1| transcriptional regulator [Deferribacter desulfuricans SSM1]
 gi|290753783|dbj|BAI80160.1| transcriptional regulator [Deferribacter desulfuricans SSM1]
          Length = 196

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 45/139 (32%), Gaps = 7/139 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I ++     +T   +A   G      ++ +   +      P   ++ KI    N 
Sbjct: 7   NIGERIRKLRNDRGMTLQDVANLTGFSKALISQIENNVV-----MPPITTLAKIANVLNV 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNT-VGVPEIRS 125
            +    +   +       K+ +   ++   +  G  ++        + + T V   +   
Sbjct: 62  KMTYFFEEEINYKDYYVVKKGDRQFVFREGAKHGYLYEELAHIKNNDLFETFVVTIKPGD 121

Query: 126 PHNGIYAIQTQDTRHKTQD 144
            H  +++ +  +  +  + 
Sbjct: 122 THKKLFSHEGYEFMYILEG 140


>gi|254510889|ref|ZP_05122956.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
           KLH11]
 gi|221534600|gb|EEE37588.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
           KLH11]
          Length = 184

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 53/177 (29%), Gaps = 20/177 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M      ++   ++ + +    +   LA ++G+   + ++ ++      +  P+ E++ +
Sbjct: 1   MLDTLSDRLACRLNELRQGRGWSLEQLADQSGISRANLSRMEKG-----DVSPTAETLGR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVF 109
           + AA    + +LL +           EK+          +            G    G  
Sbjct: 56  LCAAYGLPMSRLLMMVEDSFDPKVPFEKQPEWHDPETGFTRRSVSPPAEGLGGEVLEGHL 115

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
           P G        P      + +  +             +  +   GD L  + +    
Sbjct: 116 PPGTVITY-DTPPKPGQEHHLIVLDGGL-TLTVDG--IAHVLSGGDCLRYHLSGPTR 168


>gi|222530442|ref|YP_002574324.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222457289|gb|ACM61551.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 143

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I  + E++ LT   L+  +G+  ++ ++ +R   +     P+  ++  I  A N 
Sbjct: 2   NIGKKIAELREKYGLTRYKLSELSGVSQSALSEIERGIKQ-----PTITTLENICKALNI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           T+         +     K      +   P            F          +P     
Sbjct: 57  TLADFFAEKEPEIPPEVKSLINTVVRLSPTQIRLLDSFLKTFQPSKVIFLDDLPPEAVE 115


>gi|166367802|ref|YP_001660075.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843]
 gi|166090175|dbj|BAG04883.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843]
          Length = 73

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          ++ + + ++ E   LT   LA + G+   + +  +    E R     T  + + L  
Sbjct: 2  ELGQRMQKLRENAGLTQRKLAERLGVTVQTVSNWETGHREPRMNPSQTLKLCQSLNC 58


>gi|241661721|ref|YP_002980081.1| XRE family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240863748|gb|ACS61409.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D]
          Length = 194

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 37/123 (30%), Gaps = 8/123 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTE 56
              H++I + +  + +   L+   LA ++ +  ++ +  +R           R       
Sbjct: 1   MDIHQRIAQRLRELRDAQGLSLDALAERSQVSRSAISLIERGQSSPTAAVLDRLSSALGV 60

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY--FPPSGSGGFFDSGVFPTGNK 114
           ++  +   +     +   +  +  +          +     P + S        FP G +
Sbjct: 61  TLASLFEDSAAPAAEPSPVSRAAEQPEWTDPASGYVRRNLSPAARSPLQLVEVHFPPGER 120

Query: 115 WNT 117
              
Sbjct: 121 VAY 123


>gi|322378039|ref|ZP_08052526.1| putative transcriptional regulator [Streptococcus sp. M334]
 gi|321281021|gb|EFX58034.1| putative transcriptional regulator [Streptococcus sp. M334]
          Length = 71

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          ++   +  +  R  L  + LA+ AG+   + +  +R     
Sbjct: 5  QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYTP 45


>gi|298375961|ref|ZP_06985917.1| GIY-YIG catalytic domain-containing protein [Bacteroides sp.
           3_1_19]
 gi|298266998|gb|EFI08655.1| GIY-YIG catalytic domain-containing protein [Bacteroides sp.
           3_1_19]
          Length = 747

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 29/114 (25%), Gaps = 20/114 (17%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL-------LIK 174
                + +  +       + +  SM P    GD  +  +       G  +          
Sbjct: 626 GWIKVSNLGKLDKNMFVVQAKGNSMEPTIHDGDYCVFRANPVGSRQGKIVLTQHINFYDG 685

Query: 175 PRTGDIVAKVLISR---------RGRSIDLMSLNCCYPVDTVEM---SDIEWIA 216
              G+   K   S              I L   N  Y   +++    ++ + I 
Sbjct: 686 DNVGNYSIKTYTSLKKYSETGEWEHEKIVLEPKNKDYKSISIDNVDCNEFKVIG 739


>gi|294852923|ref|ZP_06793596.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026]
 gi|294821512|gb|EFG38511.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026]
          Length = 470

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 4  FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S +KI+    I R+     LT + +A   G+ P+  N  +R       R  + + + K+
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55

Query: 62 L 62
           
Sbjct: 56 A 56


>gi|288905901|ref|YP_003431123.1| transcriptional regulator, Cro/CI family [Streptococcus
          gallolyticus UCN34]
 gi|288732627|emb|CBI14199.1| putative transcriptional regulator, Cro/CI family [Streptococcus
          gallolyticus UCN34]
          Length = 117

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + + ++ +  NLT   LA+   +        +R       R P  E+I  I    N +  
Sbjct: 4  KRLKKLRKEANLTQQELAKNLNVSQQIIGLWERGE-----RKPKIEAINNIAKYFNVSTE 58

Query: 71 QLLDLPFSDGRTTEK 85
           L     +     ++
Sbjct: 59 YLQGKTDNKEIEEDE 73


>gi|15903970|ref|NP_359520.1| transcriptional regulator [Streptococcus pneumoniae R6]
 gi|149011979|ref|ZP_01833127.1| hypothetical protein CGSSp19BS75_02943 [Streptococcus pneumoniae
          SP19-BS75]
 gi|303259622|ref|ZP_07345598.1| hypothetical protein CGSSp9vBS293_08359 [Streptococcus pneumoniae
          SP-BS293]
 gi|303262067|ref|ZP_07348012.1| hypothetical protein CGSSp14BS292_05459 [Streptococcus pneumoniae
          SP14-BS292]
 gi|15459626|gb|AAL00731.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|147763934|gb|EDK70867.1| hypothetical protein CGSSp19BS75_02943 [Streptococcus pneumoniae
          SP19-BS75]
 gi|302636707|gb|EFL67197.1| hypothetical protein CGSSp14BS292_05459 [Streptococcus pneumoniae
          SP14-BS292]
 gi|302639174|gb|EFL69633.1| hypothetical protein CGSSpBS293_08359 [Streptococcus pneumoniae
          SP-BS293]
          Length = 71

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 5  QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYT-----PSIIIALKISQIFNE 59

Query: 68 T 68
          T
Sbjct: 60 T 60


>gi|94313728|ref|YP_586937.1| putative DNA-binding transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357580|gb|ABF11668.1| putative DNA-binding transcriptional regulator, Helix-turn-helix
           motif [Cupriavidus metallidurans CH34]
          Length = 203

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 36/122 (29%), Gaps = 7/122 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+     +  A+  + +   L+   L+R+AG+  +  ++ +R         P+   +++
Sbjct: 13  MTAEGPPAVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWR 67

Query: 61  ILAATNETICQL--LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +  A   ++                             P         G      ++   
Sbjct: 68  LANALGVSLTDFLAQGTAAPQAPAITVVPPHATPALKSPDTRCELRILGPIDMAGRFEWY 127

Query: 119 GV 120
            +
Sbjct: 128 EL 129


>gi|319936780|ref|ZP_08011192.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319808048|gb|EFW04620.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 191

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          +K+ + I R+ +   LT   LA + G+   + +K +R   
Sbjct: 4  QKVGDLIYRLRKEKQLTQKELANQIGISDKTISKWERGLG 43


>gi|261419589|ref|YP_003253271.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297530435|ref|YP_003671710.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319766405|ref|YP_004131906.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
 gi|261376046|gb|ACX78789.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61]
 gi|297253687|gb|ADI27133.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3]
 gi|317111271|gb|ADU93763.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
          Length = 97

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    ++ N++   LA + G+  ++  + +          P  E++FKI  A N  
Sbjct: 26 IAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLT-----SPRVETLFKISQALNTP 80

Query: 69 ICQLLDLPFSDG 80
                      
Sbjct: 81 FIIDGTSRQDHN 92


>gi|288572784|ref|ZP_06391141.1| transcriptional regulator, XRE family [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568525|gb|EFC90082.1| transcriptional regulator, XRE family [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 211

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 3/133 (2%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R+ +    T   LA + G+  T+    ++          +  S+ K L  +   I   
Sbjct: 7   LKRLRKEKGWTQQDLASRVGVTKTTILDWEKDRYS--PVGQNLISLAKALNVSAAFIMGE 64

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS-GVFPTGNKWNTVGVPEIRSPHNGIY 131
            + P   G   +  E  +  L      S     +    P  +        +         
Sbjct: 65  TNDPSPQGTGKKAPEGVLRYLRDQTGLSLDEAAALIDLPAEDLELMEQYEDRADDTLKQK 124

Query: 132 AIQTQDTRHKTQD 144
            I+        +D
Sbjct: 125 LIKAYGRYLSARD 137


>gi|94264573|ref|ZP_01288358.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|94265496|ref|ZP_01289245.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|94270188|ref|ZP_01291673.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93450906|gb|EAT01913.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93453984|gb|EAT04328.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93454991|gb|EAT05225.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
          Length = 95

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M         +AI        +T + +A + G  P +  + +   + G+   PS  ++ K
Sbjct: 29 MPML------DAILNARAEAGMTQAQVAERMGTKPPAVARLENSLVTGK-HSPSVATLQK 81

Query: 61 ILAATN 66
            AA  
Sbjct: 82 YAAALG 87


>gi|300718357|ref|YP_003743160.1| transcriptional regulator, XRE family protein [Erwinia billingiae
          Eb661]
 gi|299064193|emb|CAX61313.1| Transcriptional regulator, XRE family protein [Erwinia billingiae
          Eb661]
          Length = 72

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 1  MTSFSHKKIW--EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M   +  K+   + + ++  +  L+    A K GLD T  +  +R       R P+ E I
Sbjct: 1  MEKLNTTKVLFGKRVKQLRLQAGLSQEAFAHKCGLDRTYVSGIERG-----LRNPTLEVI 55

Query: 59 FKILAATNET 68
            +       
Sbjct: 56 AILAKGLGIE 65


>gi|284048419|ref|YP_003398758.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
 gi|283952640|gb|ADB47443.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
          Length = 97

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I  AI       +LT   LA KAG+  T  ++ +        R PS + + ++      
Sbjct: 29 NIIRAIVDARINQHLTQKELAAKAGIAQTEISRIENGT-----RNPSLKILQRLAEGMGM 83


>gi|218133469|ref|ZP_03462273.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990844|gb|EEC56850.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC
           43243]
          Length = 143

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           TS +H++I   I  + E ++++ + LA    L  +  +  +        R  S ESI +I
Sbjct: 22  TSVNHRQIGYRIKEVRELNHISQAQLAEMTDLSVSYISHIENA-----KRKASLESIIRI 76

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
           + A   T+ +LL     +     + + ++ + 
Sbjct: 77  VNALGITVDELLAGVQMNNPAAYQTDIDMLME 108


>gi|254173699|ref|ZP_04880371.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4]
 gi|214032391|gb|EEB73221.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4]
          Length = 65

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E   LT   LA+  G+   +    ++   +     PS    FKI       I 
Sbjct: 3  NRLRELREARGLTQEELAKALGVTRQTIIAIEKGKYD-----PSLRLAFKIARFFGAKIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DIFIYDG 64


>gi|168214025|ref|ZP_02639650.1| helix-turn-helix domain protein [Clostridium perfringens CPE str.
          F4969]
 gi|170714494|gb|EDT26676.1| helix-turn-helix domain protein [Clostridium perfringens CPE str.
          F4969]
          Length = 204

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E I    E+  ++ S LAR+ G+ P    K +          PS E   KI     +
Sbjct: 2  NLNEKITFYREKKGISKSQLAREIGVSPAYITKLENGEKS----NPSLELKIKIANVLEQ 57

Query: 68 T 68
           
Sbjct: 58 P 58


>gi|169343406|ref|ZP_02864410.1| regulator SinR [Clostridium perfringens C str. JGS1495]
 gi|169298492|gb|EDS80578.1| regulator SinR [Clostridium perfringens C str. JGS1495]
          Length = 204

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E I    E+  ++ S LAR+ G+ P    K +          PS E   KI     +
Sbjct: 2  NLNEKITFYREKKGISKSQLAREIGVSPAYITKLENGEKS----NPSLELKIKIANVLEQ 57

Query: 68 T 68
           
Sbjct: 58 P 58


>gi|311107907|ref|YP_003980760.1| hypothetical protein AXYL_04732 [Achromobacter xylosoxidans A8]
 gi|310762596|gb|ADP18045.1| helix-turn-helix family protein 10 [Achromobacter xylosoxidans A8]
          Length = 184

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 15/174 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    H      +  +  +  L+   LA++ GL  +  +K +R   E     PS  ++ +
Sbjct: 1   MIDLPH-----RLRALRRQQTLSLEQLAQRTGLTKSYLSKLERGLSE-----PSISTVLR 50

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A    + +L+    +         +          G G  +         K   +  
Sbjct: 51  LAEAYGLGVSELVGTDDAAQEEVVSVVRVADREALQRRGLGSEYHYESLAGRRKVKAME- 109

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNCGDRLLI 173
           P +  P                     L + +    + +    +++  GD +  
Sbjct: 110 PFVVHPPREF---PDATAVFPHPGEEFLLVLKGAIEVHVGERQLRLEAGDSVYF 160


>gi|296452644|ref|ZP_06894337.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296880944|ref|ZP_06904891.1| DNA-binding protein [Clostridium difficile NAP07]
 gi|296258525|gb|EFH05427.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296428057|gb|EFH13957.1| DNA-binding protein [Clostridium difficile NAP07]
          Length = 364

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 58/198 (29%), Gaps = 14/198 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +    +   +T   LA   G+   S +K +         +     + ++    N 
Sbjct: 5   NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQS-----YLDITFLPQLATYFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T+ +L+       +    K        F        FD  +                   
Sbjct: 60  TVDELICYEPQMMKEDINKLYNKLCKDFTAK----PFDEVMIEIREIIKRYYSCFPLIFR 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
            G+  +   D      +     L  +   + +      N  D    + +  +    +L++
Sbjct: 116 MGLLIVNHYDI---VDEKKRELLIDEALEIFIRIQETCNDIDIC-RQAKNMEATCYILLN 171

Query: 188 RRGRSIDLMSLNCCYPVD 205
           +  + IDL+  N  +P+ 
Sbjct: 172 QPIQVIDLLQ-NSNFPMI 188


>gi|253990606|ref|YP_003041962.1| regulatory protein DicA [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782056|emb|CAQ85220.1| similar to dica, regulator of dicb encoded by prophage cp-933
          (putative regulatory protein) [Photorhabdus
          asymbiotica]
          Length = 135

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTS-FNKSKRFGIEGRNRWPSTESIFKI 61
            +++ I   I R+  +  ++ + LA   G    S     +        R  ST+    +
Sbjct: 1  MKTNESIGARIKRLRNQQKMSQAALAELCGWASQSRIGNYESGI-----RNVSTDDAVIL 55

Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
            A   +  +L+       +  E  E    L
Sbjct: 56 SKALGVSPAELMFGDAESSQENETSETCQEL 86


>gi|227519526|ref|ZP_03949575.1| possible transcriptional repressor [Enterococcus faecalis TX0104]
 gi|257090868|ref|ZP_05585229.1| predicted protein [Enterococcus faecalis CH188]
 gi|312902504|ref|ZP_07761710.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|227072975|gb|EEI10938.1| possible transcriptional repressor [Enterococcus faecalis TX0104]
 gi|256999680|gb|EEU86200.1| predicted protein [Enterococcus faecalis CH188]
 gi|310634174|gb|EFQ17457.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|315579687|gb|EFU91878.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 162

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          F  + + E I R+    NLT   LA K GL   + NK ++  +E   R    E + K  
Sbjct: 11 FKIETMGERIKRLRLEKNLTQEELASKFGLKRAAINKYEKGNVENMKRSV-IEDMSKFF 68


>gi|163797612|ref|ZP_02191561.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199]
 gi|159177087|gb|EDP61649.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199]
          Length = 125

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
            A+    E   L+ S LA +AGL     ++ +    +G
Sbjct: 67  SALRVWREHRGLSASELAERAGLSQAYVSQLETGKRDG 104


>gi|123442034|ref|YP_001006017.1| putative UV protection and mutation protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088995|emb|CAL11808.1| putative uv protection and mutation protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 137

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 8/109 (7%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRL 171
              + +   +    +               +  S++      G +L+++ ++    GD +
Sbjct: 26  AAQDYIE--KRIDINEHCIVHPAATFFMTAEGESLIAAGIHHGALLVIDRSLPAKHGDIV 83

Query: 172 LIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV--EMSDIEWIARI 218
           +     G+   K L  R   +  L +LN   P   +     D+     I
Sbjct: 84  V-ATIGGEFSIKRLYLRP--TPRLEALNAGTPALILCEGDEDLVIFGVI 129


>gi|186473005|ref|YP_001860347.1| XRE family transcriptional regulator [Burkholderia phymatum STM815]
 gi|184195337|gb|ACC73301.1| transcriptional regulator, XRE family [Burkholderia phymatum
           STM815]
          Length = 199

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 11/171 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTE 56
              H  I   +  + + H L+   LA ++G+  ++ +  +R           +       
Sbjct: 4   MDIHSLIARRVRELRDGHGLSLEALAERSGVSRSNISLIERARSSPTAAVLDKLATALGV 63

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF--PPSGSGGFFDSGVFPTGNK 114
           ++  +  A   +      L  +  +      +   +     P   S        FP G +
Sbjct: 64  TLASLFEAPAPSAQTPSPLSRAATQAVWTDPESGYVRRTLSPEQPSPLQLVEVHFPAGQR 123

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
                       H  I+ I+      +            GD + +     V
Sbjct: 124 VAYETGARDAEIHQQIWLIEG---AMEIGAGDQHWRLEPGDCVTMRLDCPV 171


>gi|260431832|ref|ZP_05785803.1| transcriptional regulator, XRE family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415660|gb|EEX08919.1| transcriptional regulator, XRE family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 184

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 47/149 (31%), Gaps = 18/149 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            ++   ++ +      +   LAR +G+   + ++ ++  +      P+ E++ ++ AA  
Sbjct: 7   DRLARHLNDLRHGRGWSLEQLARASGISRATLSRMEKAEV-----SPTAENLGRLCAAYG 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKW 115
             + +LL +           E++I             +  P +G  G       P G   
Sbjct: 62  LPMSRLLMMVEDSFDPKVPLERQIEWRDPETGFTRRSVSPPSAGLTGEVLECHLPPGTTI 121

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
                P     H+    +           
Sbjct: 122 TYDAPPRPGQEHH--LIVLDGALTLTVDG 148


>gi|225016323|ref|ZP_03705515.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum
          DSM 5476]
 gi|224950928|gb|EEG32137.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum
          DSM 5476]
          Length = 119

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+  S   +   I  + ++  ++   LA KA L      + +R       + P+ +++  
Sbjct: 7  MSELSR-VLGSRIRTLRQQKGMSQEELAFKASLSAAHLGQIERA-----LKNPTVDTVSH 60

Query: 61 ILAATNETICQLLDLPFSDGRTTE 84
          I  A   T+ QL            
Sbjct: 61 IADALGITVDQLFQFDLPKQEREN 84


>gi|297203878|ref|ZP_06921275.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
 gi|197713065|gb|EDY57099.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
          Length = 194

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 48/172 (27%), Gaps = 22/172 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  +      +   LA ++G+  ++ ++++R  I      P+   + ++      
Sbjct: 14  RLGVRLAELRAERGWSLGELAERSGVSKSTLSRAERAEI-----SPTASLLNRLCGVYGR 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTGNK 114
           T+ QLL    ++             ++   +                G    G    G  
Sbjct: 69  TMSQLLSEIEAEAEPAPLVRSAGQPVWEDRAAGFVRRSVSPPHPGLRGELVEGRLAAGAD 128

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                 P +      I+ ++            +      GD L L       
Sbjct: 129 LAY-DRPPVPGLEQHIWVLEG---ALDVTAQDVEHHLDTGDCLRLRVWGPTR 176


>gi|254168446|ref|ZP_04875290.1| CBS domain pair protein [Aciduliprofundum boonei T469]
 gi|197622501|gb|EDY35072.1| CBS domain pair protein [Aciduliprofundum boonei T469]
          Length = 184

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S S      +I    +R   T   LA ++G+  ++  K ++  +      PS     K
Sbjct: 2  MPSLS------SIKERRKRLGWTQKELAERSGVSQSAITKIEKGDMN-----PSYTLAVK 50

Query: 61 ILAATNETICQLL 73
          I  A +E   +  
Sbjct: 51 IFNALDEGEREKY 63


>gi|254385553|ref|ZP_05000879.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194344424|gb|EDX25390.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 126

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +     +  L+   LA  AG+     ++ +R       R PS + + +
Sbjct: 1  MASLNVGNLGEYLREQRRQAQLSLRQLAEAAGVSNPYLSQIERG-----LRKPSADILQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L             + +   ++
Sbjct: 56 LAKALRISAETLYVQAGILDERDPDEVETRAVI 88


>gi|149185489|ref|ZP_01863805.1| DNA-binding protein, putative [Erythrobacter sp. SD-21]
 gi|148830709|gb|EDL49144.1| DNA-binding protein, putative [Erythrobacter sp. SD-21]
          Length = 242

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           H+ +   I R+      T  GLA   G+   +  K +  G + R R  + + + K L 
Sbjct: 126 HETLGTRIKRLRTTRGFTMCGLAESVGVSKPTLWKWE--GDQVRPRHETMQRLAKQLD 181


>gi|15901934|ref|NP_346538.1| transcriptional regulator, putative [Streptococcus pneumoniae
          TIGR4]
 gi|182685055|ref|YP_001836802.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CGSP14]
 gi|14973631|gb|AAK76178.1| putative transcriptional regulator [Streptococcus pneumoniae
          TIGR4]
 gi|182630389|gb|ACB91337.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CGSP14]
          Length = 71

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 5  QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYT-----PSIIIALKISQIFNE 59

Query: 68 T 68
          T
Sbjct: 60 T 60


>gi|315652455|ref|ZP_07905442.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM
           3986]
 gi|315485293|gb|EFU75688.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM
           3986]
          Length = 177

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 33/150 (22%), Gaps = 16/150 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + R+     LT   LA +A L     ++ +          PS  ++  IL     
Sbjct: 2   DIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENNIT-----SPSIATLLDILQCLGV 56

Query: 68  TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            I                       +K+         P +                    
Sbjct: 57  QIKDFFDEETETQVVFTEEDYFIKEDKELNNTVKWIIPNAQKNMMEPILQIIEPGGLTYP 116

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
             P         Y +      H+  D  + 
Sbjct: 117 DNP--HDGEEFGYILSGSVEIHRGNDMYVA 144


>gi|256380271|ref|YP_003103931.1| phage repressor [Actinosynnema mirum DSM 43827]
 gi|255924574|gb|ACU40085.1| putative phage repressor [Actinosynnema mirum DSM 43827]
          Length = 109

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL--IKPRTGDIVAKVLISRRGRSIDLM 196
             K +  SM P  R GD++ +        GD +L     R G +  K  +   G    + 
Sbjct: 4   MLKVRGPSMHPTVRTGDLVSVAHGRPPRAGDVVLVRWAHRPGQLSVKRAVRVDGTGWHVE 63

Query: 197 SLNCCYPVDTVEMSDIEWIARI---LW 220
             N     D+ E+   E +  +   +W
Sbjct: 64  GDNPFASTDSRELGPAEVLGVVRFRVW 90


>gi|313624590|gb|EFR94572.1| DNA-binding protein [Listeria innocua FSL J1-023]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|308186861|ref|YP_003930992.1| hypothetical protein Pvag_1353 [Pantoea vagans C9-1]
 gi|308057371|gb|ADO09543.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea
          vagans C9-1]
          Length = 82

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  + +R+  T S LA+K GL   + +  +           S  ++FK+L A   
Sbjct: 7  QLANRLKLIRQRNGWTQSELAKKVGLKQATISHFENA-----PDSTSLATLFKLLQALEV 61

Query: 68 T 68
          +
Sbjct: 62 S 62


>gi|291526522|emb|CBK92109.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
          Length = 190

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + KKI   +  + +   +T    A    +   + ++ +          P    +  I  
Sbjct: 1  MNQKKIGSFLKELRKEKGITQEEFAENLNVSGRTVSRWETGVN-----MPDISLLVDIAE 55

Query: 64 ATNETICQ 71
            N +I +
Sbjct: 56 FFNVSIPE 63


>gi|218133061|ref|ZP_03461865.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991934|gb|EEC57938.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC
          43243]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +KI   I     +  +T   LA K G+   + +K +          P    +  +  
Sbjct: 1  MDQEKIGRFIAETRNQAGMTQKELAGKIGISDKTISKWECGKS-----MPDITYLETLCD 55

Query: 64 ATNETICQ 71
          +   ++ +
Sbjct: 56 SLAISMNE 63


>gi|217965105|ref|YP_002350783.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|290893768|ref|ZP_06556748.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
 gi|217334375|gb|ACK40169.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|290556717|gb|EFD90251.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
 gi|307570335|emb|CAR83514.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes
          L99]
 gi|313609965|gb|EFR85345.1| DNA-binding protein [Listeria monocytogenes FSL F2-208]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|182440037|ref|YP_001827756.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780706|ref|ZP_08239971.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468553|dbj|BAG23073.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326661039|gb|EGE45885.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 190

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 18/139 (12%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M+      + +   + R       T   LA +AG+      + ++         PS  + 
Sbjct: 1   MSDLDQLTQSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTN-----PSVGTT 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSG 107
            K+  A   +I  LLD           + + + +                +       + 
Sbjct: 56  VKLADALGVSITTLLDHEEGAQVRLVPESRAVRMWSTEAGSSTTLLVGAEARGPLELWTC 115

Query: 108 VFPTGNKWNTVGVPEIRSP 126
               G    +   PE    
Sbjct: 116 RLVAGEGTTSDPHPEGTVE 134


>gi|16799870|ref|NP_470138.1| hypothetical protein lin0796 [Listeria innocua Clip11262]
 gi|16413247|emb|CAC96028.1| lin0796 [Listeria innocua Clip11262]
 gi|313619917|gb|EFR91474.1| DNA-binding protein [Listeria innocua FSL S4-378]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|313667112|gb|ADR73004.1| C.BspHIP [Bacillus sp. H(2010)]
          Length = 71

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   I  + +   ++   LA+++ +  T   + +   +      PS   I KI    N
Sbjct: 7  ESLGSKIKILRKSRGVSQEDLAKQSEITRTYLTQIENGKVN-----PSIGKIKKISENLN 61

Query: 67 ETICQLL 73
           ++C++ 
Sbjct: 62 ISLCEMF 68


>gi|251790167|ref|YP_003004888.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538788|gb|ACT07409.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 77

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  + +  +  +  L+    A K GLD T  +  +R       R P+ E I  I     
Sbjct: 15 RFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGV-----RNPTLEVIGVIADGLE 68


>gi|251788780|ref|YP_003003501.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537401|gb|ACT06022.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 72

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  + +  +  +  L+    A K GLD T  +  +R       R P+ E I  I     
Sbjct: 10 RFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGV-----RNPTLEVIGVIADGLE 63


>gi|239815237|ref|YP_002944147.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801814|gb|ACS18881.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 190

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S S  +I   +  +    +++   LA+ +G+  +  ++ +R  +      PS E++ +
Sbjct: 1  MRSLSAVRIGTQVRALRMAADVSGGELAKTSGISASMLSRIERGLV-----SPSVETLER 55

Query: 61 ILAATN 66
          +     
Sbjct: 56 LANGLG 61


>gi|154496785|ref|ZP_02035481.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC
          29799]
 gi|150274037|gb|EDN01137.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC
          29799]
          Length = 94

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I R+ E    + S LA+K  +  ++ N  +          P+T+ +  I      +
Sbjct: 2  IGDTIKRLREDAGFSQSALAKKLNVTRSAVNAWEMGLSV-----PTTQYVVDIAKLFRVS 56


>gi|83589232|ref|YP_429241.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572146|gb|ABC18698.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 100

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++  A+ ++   + LT   LA+K G+  +  ++ +          PS  S+ KI     
Sbjct: 30 QVARAVIKLRLDYGLTQEELAQKTGVPQSVISRLESG-----RHLPSLRSLEKISKKLG 83


>gi|329668140|gb|AEB94088.1| hypothetical protein LJP_1772 [Lactobacillus johnsonii DPC 6026]
          Length = 161

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 43/163 (26%), Gaps = 16/163 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I R+ + +NLT   +A+K  +   + +  +          P  E I  I      ++ 
Sbjct: 5   EQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRN-----LPDFEMIILIAETFGVSLD 59

Query: 71  QLLDLPFSDGRTTE---------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +L+       +  +         +  K   +     S            +G   + +   
Sbjct: 60  ELILGDKKMNKIEQTLINDGKRSRAAKFNMVTTIIGSAFIILGIIFFLISGASVSYID-- 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
                H   + I             ++        L +     
Sbjct: 118 SNGFLHENFFLIPLGYLSLFVGTVIIIARVINSICLAIKERKN 160


>gi|329936216|ref|ZP_08286009.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
 gi|329304326|gb|EGG48206.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
          Length = 196

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +   + E +        L+   LA  AG+     ++ +R       R PS + + +
Sbjct: 1  MATLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSADVLQQ 55

Query: 61 ILAATNET 68
          +  A   +
Sbjct: 56 VAKALRIS 63


>gi|312868183|ref|ZP_07728385.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|311096288|gb|EFQ54530.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
          Length = 158

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  + + HNLT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2  IGENIKTLRKAHNLTQPEFAKIVGISRNSLSRYENGAS-----SVSTELIDRICQKFNVS 56

Query: 69 ICQ 71
             
Sbjct: 57 YID 59


>gi|304439932|ref|ZP_07399826.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|304371671|gb|EFM25283.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
          Length = 138

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 16/41 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
           + + I  + +   ++   LA K G+   + +K +      
Sbjct: 2  NLSDRIRELRKIKGISQDELAEKLGVSRQAISKWENEQSIP 42


>gi|251779375|ref|ZP_04822295.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243083690|gb|EES49580.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 115

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               +  E +  + +   LT   LA + G         ++      +R P  E++ KI 
Sbjct: 1  MIKSVQFKERLVTLRKEKGLTQYDLATQLGFSRGQIGNYEQG-----SREPDQETLLKIA 55

Query: 63 AATNET 68
             N +
Sbjct: 56 KFFNVS 61


>gi|227530573|ref|ZP_03960622.1| bacteriophage transcriptional regulator [Lactobacillus vaginalis
          ATCC 49540]
 gi|227349511|gb|EEJ39802.1| bacteriophage transcriptional regulator [Lactobacillus vaginalis
          ATCC 49540]
          Length = 101

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  +A +H +T + L RK G+     +K          R P TE++ K+    + 
Sbjct: 2  NLADRIKDLANKHGITIAELERKTGISNGQISKW-------NVRSPKTENLEKVANYFHV 54

Query: 68 T 68
          +
Sbjct: 55 S 55


>gi|157150523|ref|YP_001450843.1| transcription regulator, -related protein [Streptococcus gordonii
          str. Challis substr. CH1]
 gi|262283141|ref|ZP_06060908.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|157075317|gb|ABV10000.1| transcription regulator, probable -related protein [Streptococcus
          gordonii str. Challis substr. CH1]
 gi|262261393|gb|EEY80092.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 67

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   +  +  R  L  + LAR+A +   + +  +R         PS     KI     E
Sbjct: 2  KLKNRLKELRARDGLNQTELARRAEVSRQTISLLERGEYT-----PSIIIALKIAHIFGE 56

Query: 68 TICQLLDLPF 77
          T+  +  +  
Sbjct: 57 TVENVFRIEE 66


>gi|313899162|ref|ZP_07832684.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956040|gb|EFR37686.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 206

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +   +    LA K G++  S +K +R        +P+ +++ KI+   + T
Sbjct: 6  LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLN-----YPAYDTLEKIMEVLDVT 60

Query: 69 ICQLLDLPFSDGRTTEKKE 87
            +LL   +      EK+ 
Sbjct: 61 PNELLSGEWKYINQAEKEV 79


>gi|262282955|ref|ZP_06060722.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261207|gb|EEY79906.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA]
          Length = 121

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E I +  +   ++   L+ + G+  ++  + ++  IE        E + KI    N 
Sbjct: 2  NVGERIKQRRKELKMSADALSERVGVSRSTIFRYEKGDIEKV----GPEVLKKIADTLNI 57

Query: 68 TICQLLDLPFSD 79
          +  QL+     +
Sbjct: 58 SPAQLMGWEEQN 69


>gi|300768444|ref|ZP_07078344.1| HicB family toxin-antitoxin system [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|300493962|gb|EFK29130.1| HicB family toxin-antitoxin system [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
          Length = 68

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   I ++  +   T + LA  AG+  ++ N  +           +   + K +  T
Sbjct: 2  IGSEIKKIRSKLGWTQAKLADAAGVSQSTVNTLENRTK--HPDAVTLNLLAKAMGVT 56


>gi|295835325|ref|ZP_06822258.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74]
 gi|197696396|gb|EDY43329.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74]
          Length = 187

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 37/132 (28%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +  + +   +T + L+   G+  ++ ++ +        R P+ E +  +  A    
Sbjct: 4   VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESG-----LRRPTLELLLPLARAHRVA 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+            +          P                  +    P     + 
Sbjct: 59  LDELVGTRPVADPRVRAEPIVRHQRRMYPLSRHPGGVQAYRMIIEGGSREPDPRTHEGYE 118

Query: 129 GIYAIQTQDTRH 140
            +Y +  +    
Sbjct: 119 WMYVLHGRLRLV 130


>gi|152970487|ref|YP_001335596.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238894976|ref|YP_002919710.1| putative regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|262044571|ref|ZP_06017627.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330003723|ref|ZP_08304741.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
 gi|150955336|gb|ABR77366.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238547292|dbj|BAH63643.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259038115|gb|EEW39330.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328536860|gb|EGF63164.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/124 (9%), Positives = 36/124 (29%), Gaps = 8/124 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   +  + ++   + S LA + G+      + +R         P+  +++KI    N
Sbjct: 5   QHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLN 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEI 123
                 +    S   +    +++  ++                     G    +    + 
Sbjct: 60  VPFSAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKG 119

Query: 124 RSPH 127
              H
Sbjct: 120 VIEH 123


>gi|7715980|gb|AAF68232.1|AF203972_5 unknown [Shuttle vector pBA]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 22/160 (13%)

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
                       ++++  +      +   +  G            +P I           
Sbjct: 6   NNTPQYNEATPIQQDVVYIPLVNQFAYAGYLDGYTDASYMEQLPKIPFIVDKEG-----H 60

Query: 135 TQDTRHKTQDTSM----LPLYRKGDILILNSAIQV---------NCGDRLLIKPRTGDIV 181
                 + +  SM       Y +GD L                    D +++   T  I+
Sbjct: 61  GNYIAFEVKGDSMNNGTEESYLEGDRLYCREIAPYLWATSKLHLRKWDFVIV--HTDGII 118

Query: 182 AKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            K +I       +I + SLN  YP   +++ D++ I  ++
Sbjct: 119 VKRIIDHDVENHTITIHSLNDMYPDRVIDLCDVKQIFNVI 158


>gi|11138961|gb|AAG31560.1| SgraIC control protein [Streptomyces griseus]
          Length = 79

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 1  MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M    SH  +  A+  +  R   +   L+ K+GLD T  +  +R       R P+  ++ 
Sbjct: 1  MPDLCSH--LGLAVRAVRLRRGWSQELLSEKSGLDRTYVSGLERG-----RRNPALLTLA 53

Query: 60 KILAATNETICQLLDLPFSD 79
          ++  A    + +L+     +
Sbjct: 54 RLADALEVPLSELIRDAEEN 73


>gi|323519724|gb|ADX94105.1| hypothetical protein ABTW07_3688 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 182

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + + R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N
Sbjct: 6   EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L++ P +  +     +            +            + +  +  P     
Sbjct: 61  IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +  + + + +     +  ++L L  +   L +        GD +           K + 
Sbjct: 120 LSEPHPVGSVEHIIVVEGRALLGLIDEAVELGV--------GDYICYPADQ-----KHIF 166

Query: 187 S--RRGRSIDLMSL 198
                G    L+S 
Sbjct: 167 RALETGTKALLISE 180


>gi|270261929|ref|ZP_06190201.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270043805|gb|EFA16897.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           AI R  ER  L+ + LAR+AG+  ++ ++ +          PS E+++ +  A +  + 
Sbjct: 17 AAIRRERERLGLSVTELARRAGIAKSTLSQLETGSGN-----PSLETLWSLAMALDVPVS 71

Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92
          +L+  P    +     E    +
Sbjct: 72 RLISQPRQHVQVIRANEGVTTV 93


>gi|184159797|ref|YP_001848136.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183211391|gb|ACC58789.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322509710|gb|ADX05164.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
          Length = 182

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + + R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N
Sbjct: 6   EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L++ P +  +     E            +            + +  +  P     
Sbjct: 61  IPFARLMEEPSNQVQVIRCGEGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +  + + + +     +  +++ L  +   L +        GD +           K + 
Sbjct: 120 LSEPHPVGSVEHIIVVEGRALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166

Query: 187 S--RRGRSIDLMSL 198
                G    L+S 
Sbjct: 167 RALETGTKALLISE 180


>gi|315302119|ref|ZP_07873074.1| DNA-binding protein [Listeria ivanovii FSL F6-596]
 gi|313629507|gb|EFR97685.1| DNA-binding protein [Listeria ivanovii FSL F6-596]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|315281473|ref|ZP_07870091.1| DNA-binding protein [Listeria marthii FSL S4-120]
 gi|313614873|gb|EFR88399.1| DNA-binding protein [Listeria marthii FSL S4-120]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|311031859|ref|ZP_07709949.1| transcriptional regulator SinR [Bacillus sp. m3-13]
          Length = 124

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + R+ +    + S L+  AG+  +  +  +R         PS + + KI       
Sbjct: 2   LGERLKRLRKVKGYSLSELSELAGVSKSYLSYLERNIQT----NPSLQFLNKIAVTLETD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  LL+    + +   +   E        + + G          +    +  
Sbjct: 58  LDFLLNGESDNDKPDVQVLDEEWRRLVQRAIAEGLSKEDFI---HFKEYMEF 106


>gi|310287452|ref|YP_003938710.1| helix-turn-helix motif [Bifidobacterium bifidum S17]
 gi|311064368|ref|YP_003971093.1| hypothetical protein BBPR_0984 [Bifidobacterium bifidum PRL2010]
 gi|309251388|gb|ADO53136.1| Conserved hypothetical protein with helix-turn-helix motif
           [Bifidobacterium bifidum S17]
 gi|310866687|gb|ADP36056.1| Conserved hypothetical protein with helix-turn-helix motif
           [Bifidobacterium bifidum PRL2010]
          Length = 161

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 7/147 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT--N 66
           I + I  + E   LT S  A +  +   + ++ ++   E     PS + I  I       
Sbjct: 3   IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAE-----PSIDMIRLISTRFEVP 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                 +              +       P     G + +  +  G         +    
Sbjct: 58  MARLMEMPDNGFCQSCAMPFYRPEDHGTEPDGTRSGDYCNYCYDDGVFLQDYANSDELVA 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                  ++     +  +  M  L   
Sbjct: 118 ACAPMMAESCHISVEQAEDCMSALLPN 144


>gi|289434068|ref|YP_003463940.1| transcriptional regulator, Cro/CI family [Listeria seeligeri
          serovar 1/2b str. SLCC3954]
 gi|289170312|emb|CBH26852.1| transcriptional regulator, Cro/CI family [Listeria seeligeri
          serovar 1/2b str. SLCC3954]
 gi|313638856|gb|EFS03917.1| DNA-binding protein [Listeria seeligeri FSL S4-171]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|254828889|ref|ZP_05233576.1| DNA-binding protein [Listeria monocytogenes FSL N3-165]
 gi|255028672|ref|ZP_05300623.1| transcription regulator, putative [Listeria monocytogenes LO28]
 gi|258601302|gb|EEW14627.1| DNA-binding protein [Listeria monocytogenes FSL N3-165]
          Length = 157

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|238059739|ref|ZP_04604448.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237881550|gb|EEP70378.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 206

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 10/141 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +   +   + ++ +R  +T + LA + G+  ++ ++ +        R P+ E +  +  
Sbjct: 15  RTLDAVGPRLKQLRQRREITLADLADETGISTSTLSRLEAG-----LRRPTLEQLLPLAR 69

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEI----PLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           A   ++ +L+D P +       +         +L       G      V P G+      
Sbjct: 70  AYGVSLDELVDAPATGNPRINLRPIACGDGSTILPLTRRPGGIQAYKFVLPRGDDDAEPD 129

Query: 120 VPEIRSPHNGIYAIQTQDTRH 140
           +      ++  Y +       
Sbjct: 130 L-RTHEGYDWAYVLNGTLRLV 149


>gi|167752709|ref|ZP_02424836.1| hypothetical protein ALIPUT_00969 [Alistipes putredinis DSM 17216]
 gi|167659778|gb|EDS03908.1| hypothetical protein ALIPUT_00969 [Alistipes putredinis DSM 17216]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 29/216 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           W  ++R+ E   LT +  AR  GL    +  + KR          S     KI A   + 
Sbjct: 9   WRRLERVIESSGLTINSFARYVGLPRGENLYQIKRGNY-----GVSLGVAKKIHAKFPQY 63

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               L    ++                  +   G       P     +    P    P  
Sbjct: 64  PISWLMHGEAE----------------SAATPEGDAFVVRIPVYRDSSVAEFPPKEVPER 107

Query: 129 GIYAIQTQDTRHKT---QDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            +     +    +     D     + +   +L+     +V  G R+         +   +
Sbjct: 108 YLLLSAEEARGAQIALCTDDQFGTVLQHWLVLLREPDGEVING-RVYFVMTECFYLFCSV 166

Query: 186 ISRRGR--SIDLMSL-NCCYPVDTVEMSDIEWIARI 218
               G    + L SL         V   +I  +  +
Sbjct: 167 YRIEGDPARLRLKSLFATADDDLEVRCEEICVMWPV 202


>gi|170719775|ref|YP_001747463.1| transcriptional regulator [Pseudomonas putida W619]
 gi|169757778|gb|ACA71094.1| transcriptional regulator [Pseudomonas putida W619]
          Length = 233

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 57/230 (24%), Gaps = 26/230 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  +     LT S  A + G+ P   N   +       R      + ++        
Sbjct: 5   GDRLKALLHECGLTSSDFAAQRGVTPQHINNWFK-------RGVPLARLDELADLFCVHR 57

Query: 70  CQLLDLPFSDGRTT--EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---------TV 118
             L         ++              P S S         P     +          +
Sbjct: 58  RWLRCGEGPKHPSSILHSCALPPASDNSPSSLSTQATRLLQVPFQQVHDGKLVALDGKYL 117

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
            +P       G+             + +M PL  +  IL ++ +               G
Sbjct: 118 QLPIEALQALGV--ATENVVCLAMPNQNMTPLVPRDAILAIDVSQTQVKDGETYALLHNG 175

Query: 179 DIVAKVLISRRGRSIDLMS-LNCCYPVDTVEMSD-----IEWIARILWAS 222
            +    L      ++ L S     Y V+    +      ++ +  +   S
Sbjct: 176 TLRVNSLSLGHKGTLCLHSHDRRNYTVERFTPAQRQAQHLKILGWVFHWS 225


>gi|116872182|ref|YP_848963.1| transcription regulator, putative [Listeria welshimeri serovar 6b
          str. SLCC5334]
 gi|116741060|emb|CAK20180.1| transcription regulator, putative [Listeria welshimeri serovar 6b
          str. SLCC5334]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|108797622|ref|YP_637819.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866709|ref|YP_936661.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433246|ref|YP_001068937.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768041|gb|ABG06763.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119692798|gb|ABL89871.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|126233046|gb|ABN96446.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
          Length = 161

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I   I    E   ++   LA KAG+     ++ +R       R PS + + +I  A  
Sbjct: 16 QDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERG-----LRKPSADVLNQIAKALR 70

Query: 67 ET 68
           +
Sbjct: 71 VS 72


>gi|46907036|ref|YP_013425.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|226223423|ref|YP_002757530.1| transcription regulator [Listeria monocytogenes Clip81459]
 gi|254823927|ref|ZP_05228928.1| DNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|254931186|ref|ZP_05264545.1| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|254993305|ref|ZP_05275495.1| transcription regulator [Listeria monocytogenes FSL J2-064]
 gi|255521055|ref|ZP_05388292.1| transcription regulator [Listeria monocytogenes FSL J1-175]
 gi|46880302|gb|AAT03602.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|225875885|emb|CAS04589.1| Putative transcription regulator [Listeria monocytogenes serotype
          4b str. CLIP 80459]
 gi|293582734|gb|EFF94766.1| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|293593153|gb|EFG00914.1| DNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|328467356|gb|EGF38436.1| transcription regulator [Listeria monocytogenes 1816]
 gi|332311210|gb|EGJ24305.1| DNA-binding protein [Listeria monocytogenes str. Scott A]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|16802848|ref|NP_464333.1| hypothetical protein lmo0806 [Listeria monocytogenes EGD-e]
 gi|224499672|ref|ZP_03668021.1| hypothetical protein LmonF1_08239 [Listeria monocytogenes Finland
          1988]
 gi|224501890|ref|ZP_03670197.1| hypothetical protein LmonFR_05157 [Listeria monocytogenes FSL
          R2-561]
 gi|254830206|ref|ZP_05234861.1| hypothetical protein Lmon1_02557 [Listeria monocytogenes 10403S]
 gi|254899023|ref|ZP_05258947.1| hypothetical protein LmonJ_04380 [Listeria monocytogenes J0161]
 gi|254911489|ref|ZP_05261501.1| DNA-binding protein [Listeria monocytogenes J2818]
 gi|254935815|ref|ZP_05267512.1| DNA-binding protein [Listeria monocytogenes F6900]
 gi|255026637|ref|ZP_05298623.1| hypothetical protein LmonocytFSL_10420 [Listeria monocytogenes
          FSL J2-003]
 gi|284801136|ref|YP_003413001.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578]
 gi|284994278|ref|YP_003416046.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923]
 gi|16410195|emb|CAC98884.1| lmo0806 [Listeria monocytogenes EGD-e]
 gi|258608402|gb|EEW21010.1| DNA-binding protein [Listeria monocytogenes F6900]
 gi|284056698|gb|ADB67639.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578]
 gi|284059745|gb|ADB70684.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923]
 gi|293589432|gb|EFF97766.1| DNA-binding protein [Listeria monocytogenes J2818]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|47093927|ref|ZP_00231665.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|47017687|gb|EAL08482.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
          Length = 194

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 16 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 70

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 71 TPKDFFDEEEHNQKVIYGELEH 92


>gi|325568656|ref|ZP_08144949.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
 gi|325157694|gb|EGC69850.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
          Length = 139

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E I +  +        LA K G+  ++  + ++  IE       TE + K+  + N 
Sbjct: 2  EVGERIKQRRKELGYNADYLASKLGVSRSTIFRYEKGEIEKLP----TEVLEKLAISLNT 57

Query: 68 TICQLLDLPFSDGRT 82
          T   L+         
Sbjct: 58 TPGYLMGWTEKPQDK 72


>gi|262282005|ref|ZP_06059774.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262262459|gb|EEY81156.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 190

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 2/88 (2%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I     +  +T   LA+  G+   +    ++   +    W   E I K L    + +   
Sbjct: 18  IKSARLKAGMTQKELAKIIGVTKQTIINYEKGTTD--PSWERLEDIAKALKVDVDALFPY 75

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            +     G        E     +  +  
Sbjct: 76  NEFGEMKGDVKWADHLERLANDWHYARM 103


>gi|262201756|ref|YP_003272964.1| hypothetical protein Gbro_1813 [Gordonia bronchialis DSM 43247]
 gi|262085103|gb|ACY21071.1| Protein of unknown function DUF2083,transcriptional regulator
          [Gordonia bronchialis DSM 43247]
          Length = 474

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          I   + R+ +   L+ +GLAR+  L  +  N+ +     
Sbjct: 3  IGARLRRLRDERGLSQAGLARRVELSTSYVNQLENDQRP 41


>gi|49188540|ref|YP_025638.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv.
          maculicola]
 gi|47525123|gb|AAT35137.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv.
          maculicola]
 gi|320321602|gb|EFW77709.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|330962559|gb|EGH62819.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 116

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S   K I   I    +   LT S LA     +  S  + +R         P  E + K
Sbjct: 1  MMSSIRKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAET-----APDGEQLIK 55

Query: 61 ILAATNETICQ 71
          +      +   
Sbjct: 56 MAEFFEISPMD 66


>gi|119387120|ref|YP_918175.1| XRE family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377715|gb|ABL72479.1| transcriptional regulator, XRE family [Paracoccus denitrificans
           PD1222]
          Length = 213

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 47/199 (23%), Gaps = 25/199 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  +    N++   LA  +G+     +  +          PS  S+ KIL     
Sbjct: 26  DVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRS-----SPSVASLRKILGGLGV 80

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLL--YFPPSGSGGFFDSGVFPTGNK------WNTVG 119
           T+ +  +              E+  L      +  G      +   G+            
Sbjct: 81  TMSEFFEPDLPQSPQPFFTPAELRDLTSRLYSAAQGPVGRMTLRQVGDARLHNLQILHER 140

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
                     + A    +          L         + +    +  GD  L       
Sbjct: 141 YEPGADTGETMLAHHGSEGGIVVAGEIEL--------TVADQTRVLKAGDSYLFASTQPH 192

Query: 180 IVAKVLISRRGRSIDLMSL 198
                  +   R   ++S 
Sbjct: 193 ----RFRNVSDREAVVVSA 207


>gi|313676267|ref|YP_004054263.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312942965|gb|ADR22155.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 178

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI   I  +     L+ + +A   GL   +    ++   +     PS E++  I      
Sbjct: 3   KISNNIKYLRTEKGLSQTAMAEAVGLKRGNIASYEKELAQ-----PSIENLVNIADYFGI 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            I Q+++          K ++    ++       G 
Sbjct: 58  DIHQIVNEDLQYSTKKVKHDRNPFKIFEENFPIQGL 93


>gi|229011119|ref|ZP_04168312.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
 gi|228750002|gb|EEL99834.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
          Length = 181

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|257792570|ref|YP_003183176.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
 gi|325832727|ref|ZP_08165490.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257476467|gb|ACV56787.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
 gi|325485866|gb|EGC88327.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 176

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 38/135 (28%), Gaps = 7/135 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + ++ ++  ++   +A   G+   + +  +          PS +    +      +
Sbjct: 2   VGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQG-----APSLDKAADLARLYGVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+            +    P          G      +   +  + + + +  S   
Sbjct: 57  LDDLVADEVEVVVADPDQAAGKPRDLHVLRHLEGKQCRICYRYTH--DEIDIFKAVSMPE 114

Query: 129 GIYAIQTQDTRHKTQ 143
               +   D   + +
Sbjct: 115 KARVLDVSDGWLRVE 129


>gi|167630842|ref|YP_001681341.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593582|gb|ABZ85330.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 272

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S +   I   +  + E+  LT + +A +AG+ P    + ++  ++     PS  +I +
Sbjct: 128 MGSLT--VIATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKVQ-----PSLRTIER 180

Query: 61  ILAATNETICQL 72
           +  A   T C  
Sbjct: 181 VAEAVGVTPCYF 192



 Score = 42.1 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 46/165 (27%), Gaps = 18/165 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +  + E   L    LAR AG+   +    +          PS +++  +    N +
Sbjct: 69  LGQKLRLLREERGLALQELARLAGISIETLRAIE-----AEEVRPSVDTLRTLADHLNVS 123

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK--------WNTVGV 120
           I QL+              +++ L     +   G     +                 V  
Sbjct: 124 IPQLMGSLTVIATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKVQPSLRTIERVAE 183

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM-----LPLYRKGDILILN 160
               +P   +    + +         +      P  ++   +I +
Sbjct: 184 AVGVTPCYFLVPQPSLENLLPVLGDDLIRLLGEPPIQQTLRMIYD 228



 Score = 41.7 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 19/39 (48%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          I R+ E   L+   ++R +G+  +  ++ +R   +   R
Sbjct: 6  IRRVREEKGLSLQEVSRLSGVSVSYLSEIERGTKQPAPR 44


>gi|302521880|ref|ZP_07274222.1| signal peptidase [Streptomyces sp. SPB78]
 gi|302430775|gb|EFL02591.1| signal peptidase [Streptomyces sp. SPB78]
          Length = 200

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSLN 199
            +  SMLP  R GD L++    +V  GD ++++       ++ K    RRG    +++ N
Sbjct: 1   MRGPSMLPTLRHGDRLLVRYGARVRPGDVVVLRHPFQQDLLIVKRAAERRGAGWWVLADN 60

Query: 200 C----CYPVDTVEMSDIEWIARIL 219
                      V   ++  + R+L
Sbjct: 61  PWAGGDSNDYGVVPQEL-VLGRVL 83


>gi|304315786|ref|YP_003850931.1| XRE family transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777288|gb|ADL67847.1| transcriptional regulator, XRE family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 126

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 5/108 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + +  N+T   +A   G+ P++    ++       R P  E++ KI    N +
Sbjct: 2   IGDKLKSLRKIKNVTQKDIADYLGVSPSAIGLYEQN-----RREPDLETVQKIADFFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +  LL         T     E         G          P      
Sbjct: 57  VDYLLGRTNKRNVDTSDDVDERLHKVMQELGPDILLAFYDLPNMTDEE 104


>gi|210615069|ref|ZP_03290438.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787]
 gi|210150452|gb|EEA81461.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787]
          Length = 179

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 16/139 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +    NLT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2   NIGNKIKELRIEKNLTQEELANRAELSKGFISQLERNLT-----SPSIATLIDILQCLGT 56

Query: 68  TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + +                     +   +       P +         +         +
Sbjct: 57  NLTEFFAEESDEQIVFRKDDFFVKKDTGLRNTIEWIIPNAQKNMMEPILLTLEAGGSTYL 116

Query: 119 GVPEIRSPHNGIYAIQTQD 137
            VP         Y +Q   
Sbjct: 117 DVP--HEGEEFGYVLQGSI 133


>gi|107100810|ref|ZP_01364728.1| hypothetical protein PaerPA_01001838 [Pseudomonas aeruginosa PACS2]
 gi|296390262|ref|ZP_06879737.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 185

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 14/178 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+  +  L+   LAR A +        +   +       S  ++ +I AA  
Sbjct: 12  EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 66

Query: 67  ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                L+  P +D              E    LL   P+       +     G     V 
Sbjct: 67  VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 124

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            P+       +  I+ +           +                VN GD ++   R 
Sbjct: 125 EPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRN 182


>gi|322834164|ref|YP_004214191.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
 gi|321169365|gb|ADW75064.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
          Length = 184

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 5/114 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  + +   L+   LA  +G+     +K +R         PS   + ++ A+   +
Sbjct: 7   IATRLQALRKSQGLSLEQLASSSGVSKAMISKIERQDS-----SPSASLLGRLAASLGVS 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           + QLL              ++                +     G +   + +P 
Sbjct: 62  LAQLLSEDNEQPAPLRPLAQQEVWQDPDIGYLRRQVTAHEENGGAELVEITLPA 115


>gi|300817090|ref|ZP_07097309.1| bacteriophage CI repressor protein [Escherichia coli MS 107-1]
 gi|300530442|gb|EFK51504.1| bacteriophage CI repressor protein [Escherichia coli MS 107-1]
          Length = 218

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +AI+R+ E +   T   L    G+  ++   +  R            + + +    T  +
Sbjct: 38  KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 90

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L     S   +      E+                        ++   +P       
Sbjct: 91  LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 143

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                            +        +         +  G  ++     G+I  + +   
Sbjct: 144 -------------VITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRL 182

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G  I +   N  +     ++ DIE I +I+
Sbjct: 183 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 210


>gi|300916301|ref|ZP_07133048.1| bacteriophage CI repressor protein [Escherichia coli MS 115-1]
 gi|300416390|gb|EFJ99700.1| bacteriophage CI repressor protein [Escherichia coli MS 115-1]
          Length = 218

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +AI+R+ E +   T   L    G+  ++   +  R            + + +    T  +
Sbjct: 38  KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 90

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L     S   +      E+                        ++   +P       
Sbjct: 91  LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 143

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                            +        +         +  G  ++     G+I  + +   
Sbjct: 144 -------------VITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRL 182

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G  I +   N  +     ++ DIE I +I+
Sbjct: 183 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 210


>gi|261207860|ref|ZP_05922545.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566605|ref|ZP_06447025.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260078243|gb|EEW65949.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161595|gb|EFD09475.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 203

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I  + +   ++   LA K G+   + +K +          P  E +  +      T  
Sbjct: 5   DRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQST-----PDLEKVIIMSDFFGVTTD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
            +L          +K ++    + +  S +    
Sbjct: 60  YILKGIEPVNDKEQKSKEIASKILYISSTAFVAI 93


>gi|256023555|ref|ZP_05437420.1| repressor protein [Escherichia sp. 4_1_40B]
 gi|323191017|gb|EFZ76284.1| bacteriophage CI repressor helix-turn-helix domain protein
           [Escherichia coli RN587/1]
 gi|324112715|gb|EGC06691.1| bacteriophage CI repressor helix-turn-helix domain-containing
           protein [Escherichia fergusonii B253]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +AI+R+ E +   T   L    G+  ++   +  R            + + +    T  +
Sbjct: 9   KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L     S   +      E+                        ++   +P       
Sbjct: 62  LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                            +        +         +  G  ++     G+I  + +   
Sbjct: 115 -------------VITDNNSEFICDKEF------DDIRDGKWVISID--GEITIRDITRL 153

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G  I +   N  +     ++ DIE I +I+
Sbjct: 154 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 181


>gi|189439596|ref|YP_001954677.1| putative transcriptional regulator [Bifidobacterium longum DJO10A]
 gi|317481901|ref|ZP_07940928.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|189428031|gb|ACD98179.1| Hypothetical transcriptional regulator [Bifidobacterium longum
           DJO10A]
 gi|316916692|gb|EFV38087.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 161

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 7/147 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT--N 66
           I + I  + E   LT S  A +  +   + ++ ++   E     PS + I  I       
Sbjct: 3   IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAE-----PSIDMIRLISTRFEVP 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                 +              +       P     G + +  +  G         +    
Sbjct: 58  MARLMEMPDNGFCQSCAMPFYRPEDHGTEPDGTRSGDYCNYCYDDGVFLQDYANSDELVA 117

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                  ++     +  +  M  L   
Sbjct: 118 ACAPMMAESCHISVEQAEDCMSALLPN 144


>gi|94311101|ref|YP_584311.1| XRE family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|93354953|gb|ABF09042.1| hypothetical protein Rmet_2163 [Cupriavidus metallidurans CH34]
          Length = 710

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN-------RWP 53
          M++ +   I   + ++ E   L  + LARK    P   ++ +    E          R  
Sbjct: 1  MSTQTPMAIGHYLTQLREHAGLKQAELARKVTWSPAVLSRVESGERELNPEELGEVLRAI 60

Query: 54 STESIFKILAATNETI 69
           T+   K+      + 
Sbjct: 61 GTDDALKLGERLQRSW 76


>gi|239814989|ref|YP_002943899.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801566|gb|ACS18633.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 187

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/95 (9%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S  +I   +  +     ++   LA+ +G+  +  ++ +R  +      PS E++ ++  
Sbjct: 1  MSAARIGAQVRALRMAAEMSAGSLAKASGVSASMLSRIERGLV-----SPSVETLERVAQ 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
            +  + +           +  +  +  ++    +
Sbjct: 56 GLHVPVSRFFGDQARRTDFSHVRAGKGVVVDRVGA 90


>gi|124408|sp|P13772|IMMF_BPPH1 RecName: Full=ImmF control region 10 kDa protein
 gi|15521|emb|CAA29475.1| unnamed protein product [Bacillus phage phi105]
 gi|295002744|gb|ADF59165.1| hypothetical protein PHI105_00160 [Bacillus phage phi105]
          Length = 90

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              KK+   I    +  +L  + +A+  G+  T  +  +          PST+++ +I 
Sbjct: 1  MLDGKKLGALIKDKRKEKHLKQTEMAKALGMSRTYLSDIENGRY-----LPSTKTLSRIA 55


>gi|332298033|ref|YP_004439955.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332181136|gb|AEE16824.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 331

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          K+ E I+ + +R+  +   LA K  +   S +K +  G   
Sbjct: 2  KLAEKIEILRKRNGWSQEELADKVAVSRQSVSKWESGGAVP 42


>gi|293556240|ref|ZP_06674830.1| prophage Lp1 protein 8 [Enterococcus faecium E1039]
 gi|291601659|gb|EFF31921.1| prophage Lp1 protein 8 [Enterococcus faecium E1039]
          Length = 126

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K +   I  + E+ +   + L RK GL+ ++ NK +        R  STE + K+    N
Sbjct: 3   KDLVNRIIDLREKRDWNQAELGRKIGLEKSAMNKIENGT-----RRVSTEELQKLAEVFN 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            T   LL    +    T++   E+  L    +  
Sbjct: 58  VTTDYLLGRNQTPEWATKEDIIELDKLLESNANM 91


>gi|237744347|ref|ZP_04574828.1| predicted protein [Fusobacterium sp. 7_1]
 gi|229431576|gb|EEO41788.1| predicted protein [Fusobacterium sp. 7_1]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 21/192 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E I  + + +NLT   +A+K G+  +S  K +         +PS E I KI+   N 
Sbjct: 2   KISEKIKELRKNNNLTQKEMAKKLGVSLSSLQKYEYGDF-----YPSIEVIRKIVEFFNI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T+   LD+          +EKE+       S               +   +   +    +
Sbjct: 57  TLNDFLDVSDI-----SNEEKEVINWNIKRSREVEKEIENDIEENARNIEILTEDEGIKN 111

Query: 128 NG----IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                 I+ +   +   K             + L             +     T D   K
Sbjct: 112 LYCDNIIWQMSIMNFYFKVNTEKKEVNIEFYNDL------NFENNKGVYDVTLTFDE-FK 164

Query: 184 VLISRRGRSIDL 195
           + +S    ++ L
Sbjct: 165 IFLSHIEETLKL 176


>gi|229815891|ref|ZP_04446215.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM
          13280]
 gi|229808586|gb|EEP44364.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM
          13280]
          Length = 201

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   I  + E   LT S LA  A +   S    +R         P  +S+  +  A N 
Sbjct: 6  KVGSRIRILREAAGLTQSELAATAYVTRQSVGNWERGNT-----LPDVQSLQLVAKALNT 60

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           +  LL     D      + +         
Sbjct: 61 KVDGLLGDGLPDMLEETAEARRQLTHCLAA 90


>gi|138896745|ref|YP_001127198.1| prophage LambdaBa04, DNA-binding protein [Geobacillus
          thermodenitrificans NG80-2]
 gi|196249440|ref|ZP_03148138.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|134268258|gb|ABO68453.1| Prophage LambdaBa04, DNA-binding protein [Geobacillus
          thermodenitrificans NG80-2]
 gi|196211197|gb|EDY05958.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 137

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KK+ E + R+ ++   T   LA +  +  +  +K +          P  +S+ K+    N
Sbjct: 3  KKLGEMLKRLRKQQRWTQEQLAEQLNVSRSQISKWENGST-----LPDIQSLEKLCRLFN 57

Query: 67 ET 68
           +
Sbjct: 58 VS 59


>gi|225017440|ref|ZP_03706632.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum
          DSM 5476]
 gi|224949850|gb|EEG31059.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum
          DSM 5476]
          Length = 172

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I R  ++  L+   LA K G+   +  K +          P  E I  +      +  
Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLA-----SPELEKIVSLSECFKVSTD 66

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFP 96
           LL    ++    ++   +       
Sbjct: 67 YLLKDNITEPTPPQESALKGNKRMSW 92


>gi|210624086|ref|ZP_03294186.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275]
 gi|210153219|gb|EEA84225.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275]
          Length = 158

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            +   K + E +    E++++T   +A   G+   + +K +    +     PST ++  +
Sbjct: 88  KTIIRKSLGEVLKSHREKNHMTQEFVAEAIGVSRQAVSKWENGVSD-----PSTSNLIAL 142

Query: 62  LAATNETICQ 71
               N +  +
Sbjct: 143 AKLFNMSPEE 152


>gi|108758632|ref|YP_630926.1| putative transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108462512|gb|ABF87697.1| putative transcriptional regulator [Myxococcus xanthus DK 1622]
          Length = 116

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERH--NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M+    K+I + I  +  +     T   LA +A +  +  +  +R       R P  E++
Sbjct: 1  MSDL-GKRIGQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGE-----RVPHVETL 54

Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEK 88
            +  A   ++ +L          TE   +
Sbjct: 55 AALANALGVSLGELFTGTEQTLAQTEDLLR 84


>gi|307298381|ref|ZP_07578185.1| transcriptional regulator, XRE family [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916467|gb|EFN46850.1| transcriptional regulator, XRE family [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 135

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 5/107 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +    +   L+   L    G      +  +R          S E++ KI A    
Sbjct: 34  QVASQLMSYRKERGLSQKQLGELLGFKQPYVSNIERGEEN-----LSLETLVKISACLKG 88

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            +   L +     + T++  K +P+     S           P+   
Sbjct: 89  RLNVDLGITDRKTKITKEVIKYVPIYIPVISVQNNESSFCWKPSEAA 135


>gi|291297562|ref|YP_003508840.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290566782|gb|ADD39747.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 183

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + + I   I  +     ++   LA +AG+     ++ +R       R PS E + +I  
Sbjct: 1  MAERDIGGFIRDLRRNAKVSLRQLADQAGVSNPYLSQIERG-----LRKPSAEVLQQIAN 55

Query: 64 ATNETICQLL 73
          A   +   + 
Sbjct: 56 ALKVSTPLMY 65


>gi|167820072|ref|ZP_02451752.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 91]
          Length = 113

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+    +   AI ++ E    +   LA  AGL+ +   + +R          S  ++ K
Sbjct: 20 MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 73

Query: 61 ILAATNETICQLLDLPFSDGRTTE 84
          +  A    I +LL      G    
Sbjct: 74 LARAFGVPIARLLSPAGDAGPPPH 97


>gi|167759352|ref|ZP_02431479.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704]
 gi|167662909|gb|EDS07039.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704]
          Length = 257

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 39/148 (26%), Gaps = 10/148 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++  +  ++   LA + G+   S +K +          P    +  +      +I 
Sbjct: 5   EKLIQLRRKQGMSQEQLADRLGITRQSVSKWESGSA-----APELSKLITLSEMFQVSID 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L+          +++ + +             +               VP +    +  
Sbjct: 60  YLVKDAEEPKGAEKEESRRLEEKVDNIVRYMKGYHYTSKAMIKG-----VPFVCVRLSRR 114

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILI 158
              +             + +   G I +
Sbjct: 115 LGKEGVAKGIIAVGNVAIGVLSFGCISV 142


>gi|154499890|ref|ZP_02037928.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC
           29799]
 gi|150271488|gb|EDM98745.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC
           29799]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 23/90 (25%), Gaps = 2/90 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAAT 65
           +    I  +     +T   LA   G+   + +K +R               ++       
Sbjct: 39  RTGSFIASLRREKGMTQKELASLLGISDKAVSKWERGESYPEITLFPALGATLGVTADEL 98

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
                Q      +       ++   PLL  
Sbjct: 99  MAGERQPHTPTEAPEPVRIPEQALYPLLMD 128


>gi|104774634|ref|YP_619614.1| XRE family transcriptional regulator [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|103423715|emb|CAI98696.1| Putative transcriptional regulator (Xre family) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 119

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +  +  R  ++   LA   G+   + +  +        + P  +++ KI      +
Sbjct: 6  IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVDKIANIFGVS 60

Query: 69 IC 70
            
Sbjct: 61 RN 62


>gi|83311030|ref|YP_421294.1| hypothetical protein amb1931 [Magnetospirillum magneticum AMB-1]
 gi|82945871|dbj|BAE50735.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 241

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 21/154 (13%)

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAI 133
           +      +   +     P +     G  G         G   +    P         +  
Sbjct: 96  NPLQFIHKLMHQPTTPSPQIPIRAVGRAGPAQEAFIGDGPV-DWTERP--------AFLR 146

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS----RR 189
                      TSM+P YR G ++ ++       G  +++      ++ K  +       
Sbjct: 147 GVDAYGVYVAGTSMVPRYRPGQLVFVDPHRPPVNGQGVVVVRYDNAVLIKEFVGYGLDHD 206

Query: 190 GRSIDLMSLNCCYPVDTVE----MSDIEWIARIL 219
              + L      Y     E     S+I  I  I+
Sbjct: 207 EDVVILR----EYAPVDREFAVFGSEITAIHVIV 236


>gi|78049460|ref|YP_365635.1| putative polymerase V subunit [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037890|emb|CAJ25635.1| putative polymerase V subunit [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 159

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           +    +  +         ++ +  SM+      GDIL+++ ++    GD +L        
Sbjct: 47  DELDLNRVLIRNPPATFLYRAEGWSMILAGVCDGDILVVDRSVSPINGDMVLAIWEGNQP 106

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
           V K+L       I+L S +       +  
Sbjct: 107 VCKILQ-VAVDHIELHSRSPHCAPIVLAP 134


>gi|295107669|emb|CBL05212.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 137

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I R  +   +T + LA   GL   +    +      +      E +  I      +
Sbjct: 3  VGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRTVKP-----ELLESIADTLGVS 57


>gi|260589839|ref|ZP_05855752.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|325662733|ref|ZP_08151327.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|260539646|gb|EEX20215.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|325470970|gb|EGC74198.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 143

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I +       T   LA  +GL  ++    +        R+PS+E + KI  +   +
Sbjct: 3  VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGN-----RFPSSEQLEKIANSLKIS 57

Query: 69 ICQLLDLPFSDGRTTEK 85
             + D  F    +   
Sbjct: 58 PYAMSDPNFDTYVSVMH 74


>gi|269127887|ref|YP_003301257.1| putative phage repressor [Thermomonospora curvata DSM 43183]
 gi|268312845|gb|ACY99219.1| putative phage repressor [Thermomonospora curvata DSM 43183]
          Length = 110

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 140 HKTQDTSMLPLYRKGDILIL-NSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLM 196
            +    SMLP  R GD L++      V  GD ++ +   R G ++ K  + R      L 
Sbjct: 5   VEVSGESMLPALRPGDWLLVRRRGRPVAAGDVVVARHPRRAGLLIVKRAVRRTAEGWWLE 64

Query: 197 SLN 199
           S N
Sbjct: 65  SDN 67


>gi|206578107|ref|YP_002238269.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|288935257|ref|YP_003439316.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|290509310|ref|ZP_06548681.1| DNA-binding protein [Klebsiella sp. 1_1_55]
 gi|206567165|gb|ACI08941.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|288889966|gb|ADC58284.1| transcriptional regulator, XRE family [Klebsiella variicola At-22]
 gi|289778704|gb|EFD86701.1| DNA-binding protein [Klebsiella sp. 1_1_55]
          Length = 193

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 8/138 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E    + + LA +AG      +K +R         P+   + ++  A 
Sbjct: 9   NQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGES-----SPTASMLGRLSGAF 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             ++  L+           +     P+ + P S       S           + +P    
Sbjct: 64  GISMSTLIARAEMQEGKLLR-FASQPVWHDPQSHYLRRHVSPRSDLPIDLVQIELPPGSD 122

Query: 126 PHNGI--YAIQTQDTRHK 141
                  YA+  Q    +
Sbjct: 123 VPMPASSYALARQLIWLQ 140


>gi|254413974|ref|ZP_05027742.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC
          7420]
 gi|196179110|gb|EDX74106.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC
          7420]
          Length = 142

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++ + I+++ E    T S LA   G+D ++  +  +   +      +   + K+   T
Sbjct: 13 QQRLNQLIEQLLED-GWTQSSLANAIGVDFSTVYRWLKGKTKPEPDSRNFRQLAKVSGGT 71

Query: 66 NET 68
            T
Sbjct: 72 PRT 74


>gi|20808515|ref|NP_623686.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517137|gb|AAM25290.1| predicted Transcriptional regulator [Thermoanaerobacter
           tengcongensis MB4]
          Length = 144

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I ++   H +T     +  G+   S +  +          PS E   KI    N +
Sbjct: 4   LGERIKQLRLEHGMTQEEFGKLFGVTKYSISLYESNKT-----SPSDEIKKKIAEYFNVS 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           +  L+ L         +  KE   +          F   V  
Sbjct: 59  MDWLMGLTDVRKPFIPENYKEKYKITKRDMLQYENFIQHVNA 100


>gi|116514765|ref|YP_813671.1| XRE family transcriptional regulator [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC BAA-365]
 gi|116094080|gb|ABJ59233.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC BAA-365]
          Length = 119

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +  +  R  ++   LA   G+   + +  +        + P  +++ KI      +
Sbjct: 6  IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVG-----RKVPRMKAVDKIANIFGVS 60

Query: 69 IC 70
            
Sbjct: 61 RN 62


>gi|319948673|ref|ZP_08022795.1| Xre family DNA-binding protein [Dietzia cinnamea P4]
 gi|319437655|gb|EFV92653.1| Xre family DNA-binding protein [Dietzia cinnamea P4]
          Length = 479

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + R+ E + LT +  A+  GL  +  N+ ++      +R      + KI        
Sbjct: 2   GARLRRLREENGLTQAAFAQSLGLSSSYLNQLEKDTRPVTSR-----VLVKISEVYGVDS 56

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                   +       +      L                P 
Sbjct: 57  TFFASDSDTRLIAAVTEALTDTQLSTEVPADEVVDLVRAHPA 98


>gi|304440739|ref|ZP_07400622.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|304370772|gb|EFM24395.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
          Length = 135

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I  + E   LT   LA   G    + +  +  G   R    + E + +I  
Sbjct: 7  IKSLREEKGLTQKELADMLGTSLKTISNYEVKGTRPRT-MKNFEKLAEIFD 56


>gi|295106118|emb|CBL03661.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 83

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 15/44 (34%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          ++   +        L+ + LAR  G+   + +  +        +
Sbjct: 20 ELKNRLKAARAEQGLSQTDLARLVGVSRQTISAIETGLFNPTAK 63


>gi|293374084|ref|ZP_06620420.1| cupin domain protein [Turicibacter sanguinis PC909]
 gi|325845732|ref|ZP_08169012.1| cupin domain protein [Turicibacter sp. HGF1]
 gi|292647291|gb|EFF65265.1| cupin domain protein [Turicibacter sanguinis PC909]
 gi|325488246|gb|EGC90675.1| cupin domain protein [Turicibacter sp. HGF1]
          Length = 180

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R+     LT   LA +  L     ++ +R         PS  ++  IL A   T
Sbjct: 3   IGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLA-----SPSIATLVDILEALGTT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPH 127
           + +      +D +   ++E          + +  +          +   V + P   S  
Sbjct: 58  LGEFFAEEKNDQKVVFQREDVFIKEELDYNMTIRWIIPNAQKNEMEPIIVDLEPGGMSYD 117

Query: 128 NGIYAIQTQDTRHK 141
           +  +  +      K
Sbjct: 118 DEPHHGEEFGYVLK 131


>gi|254431041|ref|ZP_05044744.1| peptidase family protein [Cyanobium sp. PCC 7001]
 gi|197625494|gb|EDY38053.1| peptidase family protein [Cyanobium sp. PCC 7001]
          Length = 182

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLL 172
             + V        +  +    T     + +  +M       GD+L+++ ++    G  ++
Sbjct: 43  ADDYVE--ASIDLNAALIPRPTSTFLMRVEGDAMRAAGIHHGDLLVIDRSVNARPGCTVV 100

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +    G  + + L  +R     L++ +       ++  D      ++
Sbjct: 101 VVHD-GRFLLRQLRGQRPP-WQLVASDPAIAPMVLQDDDALIWGVVI 145


>gi|126652627|ref|ZP_01724791.1| post-exponential-phase response transcriptional regulator
          [Bacillus sp. B14905]
 gi|126590618|gb|EAZ84735.1| post-exponential-phase response transcriptional regulator
          [Bacillus sp. B14905]
          Length = 248

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + +   EAI        ++   LAR+ G+     ++ +          PS E I KI  
Sbjct: 1  MTKETFGEAIKEARIARKISLRELARRIGISHPYLSQLENNHNN----NPSLEIIVKISN 56

Query: 64 ATNETICQ 71
              ++  
Sbjct: 57 ELGISLQH 64


>gi|116695934|ref|YP_841510.1| XRE family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530433|emb|CAJ96780.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16]
          Length = 199

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 18/169 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E +  + + + LT   LA++A L  +  +K +R         P+  ++ K+  A + T
Sbjct: 16  IAERLAALRKLNGLTLEELAQRASLTKSYLSKLERGLS-----SPTIGTVLKLAEALDVT 70

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEIR 124
           + QL+  P         K     + + P +   G+    +                P   
Sbjct: 71  VDQLIAKPQRGNEILLVKAA-DRVPFSPSAERQGYTYEAIATERVDKAMQPFVMVPPFTL 129

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
           +    + +   ++                 ++L  +  +++  GD L  
Sbjct: 130 AQDQPMASHAGEELIFVVSGEM--------EVLFDDRTVRMRAGDSLYF 170


>gi|75762482|ref|ZP_00742345.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228901189|ref|ZP_04065390.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
 gi|74490035|gb|EAO53388.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228858439|gb|EEN02898.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
          Length = 122

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + ++  LT   LA +  L        +R       R  S  ++ KI      +
Sbjct: 11 VGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGE-----RNISMLTLQKIAVGLEVS 65

Query: 69 I 69
           
Sbjct: 66 P 66


>gi|331002934|ref|ZP_08326447.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413227|gb|EGG92601.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 177

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 34/150 (22%), Gaps = 16/150 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + R+     LT   LA +A L     ++ +          PS  ++  IL     
Sbjct: 2   EIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENDIT-----SPSIATLLDILQCLGV 56

Query: 68  TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            I                       +K+         P +                    
Sbjct: 57  EIKDFFDEETETQVVFTEEDYFIKEDKELNNTIKWIIPNAQKNMMEPILQIIEPGGLTYP 116

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
             P         Y +      H+  D  + 
Sbjct: 117 DNP--HDGEEFGYVLSGTVEIHRGSDVYLA 144


>gi|331085854|ref|ZP_08334937.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406777|gb|EGG86282.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 179

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +     LT   LA +A L     ++ +R         PS  ++  +L     
Sbjct: 2  NIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLT-----SPSIATLVDLLQCLGT 56

Query: 68 TICQLLDLPF 77
           +        
Sbjct: 57 NLKDFFSDDS 66


>gi|325662004|ref|ZP_08150623.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325471667|gb|EGC74886.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 186

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +     LT   LA +A L     ++ +R         PS  ++  +L     
Sbjct: 9  NIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLT-----SPSIATLVDLLQCLGT 63

Query: 68 TICQLLDLPF 77
           +        
Sbjct: 64 NLKDFFSDDS 73


>gi|296533827|ref|ZP_06896363.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296265845|gb|EFH11934.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 20/172 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             ++   + R+     L+   LA + G+   + ++ +R         P+   + ++  A 
Sbjct: 11  EARLAACLARLRAEQGLSLEELAGRTGISRATLSRLERAEA-----SPTAAMLGRLCTAY 65

Query: 66  NETICQLLDLPFSDGRTTEKKEKEI-----------PLLYFPPSGSGGFFDSGVFPTGNK 114
             T+  ++    +      +   +             ++  P  G  G    G  P G  
Sbjct: 66  GRTLSWMMGEVEAQAPAVVRDAAQPRWTDPESGFRRRVVSPPGPGLRGELLEGRLPPGAS 125

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
                 P   +       +         +          GD L         
Sbjct: 126 VAYAASP--LAGLEHHLWLLEGVLEMAVEG--GEHRLLPGDCLRYRLHGPSR 173


>gi|229088202|ref|ZP_04220142.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44]
 gi|228695098|gb|EEL48134.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44]
          Length = 181

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 49/185 (26%), Gaps = 13/185 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +  I   I R+ +   LT   +A +  L  +  ++ +R          + ES+ KI  A 
Sbjct: 2   NDLIGVKIKRLRKERKLTLKQIADQTNLSISFLSQVERSKS-----SITLESLKKISEAL 56

Query: 66  NETICQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                     P      T  +                    +   P  N    +  P  +
Sbjct: 57  GVNPSYFFSEPEKQTTPTVMRNIINKTNTLHYQFFYRDLAGNIENPIFNPILVLLNPGAK 116

Query: 125 SPHNGIYAIQTQDTR----HKTQDTSMLPLYRKGDILILN---SAIQVNCGDRLLIKPRT 177
              +  ++ Q                   +    D + L+       VN  D ++     
Sbjct: 117 REESYSHSGQEFLYVLEGKLTIIIDKEEHVLNPYDCISLDSTTPHNWVNKTDSIVKFLCV 176

Query: 178 GDIVA 182
             I+ 
Sbjct: 177 SSILV 181


>gi|168206392|ref|ZP_02632397.1| LexA repressor [Clostridium perfringens E str. JGS1987]
 gi|170662087|gb|EDT14770.1| LexA repressor [Clostridium perfringens E str. JGS1987]
          Length = 330

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 11/219 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++++ E++N +   L          FN+ KR      N     + + K    T +   ++
Sbjct: 92  LNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDIKLFQELSKEFTNTLDKEHEI 151

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNG 129
                 + +             F  S       +  F   +    V            + 
Sbjct: 152 NLSDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISK 211

Query: 130 IYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
             A+ +        + +  SM  L++  +++I         GD ++       +      
Sbjct: 212 SIALPSNYKDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIIIAYLSENNEATC-KK 270

Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222
           I ++   ++L   +   Y +   +  SDI  I  ++  S
Sbjct: 271 IHKKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 308



 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I    +++ L+ + LA K G+  T+    +R  +E     P+  ++ ++    N +
Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVE-----PNIYTLIQLSKLMNRS 63


>gi|307265008|ref|ZP_07546569.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|306919993|gb|EFN50206.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
          Length = 130

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + +  + +  NLT   LA+  G+  ++    +        + P  E++ KI    N +
Sbjct: 5  DRLKELRKEKNLTQEDLAKILGISRSTIAGYE-----TERKEPDYETLKKIADFFNVS 57


>gi|149002955|ref|ZP_01827866.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP14-BS69]
 gi|147758958|gb|EDK65953.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP14-BS69]
          Length = 47

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          ++   +  +  R  L  + LA+ AG+   + +  +R  
Sbjct: 2  QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDE 39


>gi|218892536|ref|YP_002441405.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234475|ref|ZP_04927798.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719]
 gi|254239730|ref|ZP_04933052.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192]
 gi|126166406|gb|EAZ51917.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719]
 gi|126193108|gb|EAZ57171.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192]
 gi|218772764|emb|CAW28549.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 216

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 14/178 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+  +  L+   LAR A +        +   +       S  ++ +I AA  
Sbjct: 43  EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 97

Query: 67  ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                L+  P +D              E    LL   P+       +     G     V 
Sbjct: 98  VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 155

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            P+       +  I+ +           +                VN GD ++   R 
Sbjct: 156 EPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRN 213


>gi|220930676|ref|YP_002507585.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|220001004|gb|ACL77605.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
          H10]
          Length = 60

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + + +  E  NLT S LA + G+     +  +     G     S E++ ++  A + ++
Sbjct: 1  MKKLKQARESKNLTQSELASRTGISQQHISMIENGERIG-----SVETLRELAKALDTSV 55

Query: 70 CQ 71
           Q
Sbjct: 56 DQ 57


>gi|282860479|ref|ZP_06269545.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282564215|gb|EFB69751.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 161

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61 ILAATNET 68
          +  A   +
Sbjct: 56 VAKALRIS 63


>gi|254391929|ref|ZP_05007122.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294811944|ref|ZP_06770587.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197705609|gb|EDY51421.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294324543|gb|EFG06186.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 287

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 6/45 (13%), Positives = 14/45 (31%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
             +  + +    T   LA++ G   T  +  +        R+  
Sbjct: 29 GARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPTPRFAK 73


>gi|116049312|ref|YP_791886.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584533|gb|ABJ10548.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 216

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 14/178 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+  +  L+   LAR A +        +   +       S  ++ +I AA  
Sbjct: 43  EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 97

Query: 67  ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                L+  P +D              E    LL   P+       +     G     V 
Sbjct: 98  VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 155

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
            P+       +  I+ +           +                VN GD ++   R 
Sbjct: 156 EPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRN 213


>gi|56961729|gb|AAW31820.1| Orf213 [Dichelobacter nodosus]
          Length = 213

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 69/223 (30%), Gaps = 26/223 (11%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLT----PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M+      I   I R   +  ++     + +A+  G+   +     +   E   R P+ +
Sbjct: 1   MSQEKLNTIATEITRAFAKIGISGRGTKAKIAKICGVTSAAVGAWFQ---ENNPRQPTID 57

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++ KI   TN ++ QL+    +       +  E+P        +   +            
Sbjct: 58  NLLKISKVTNTSLEQLIRGREALDSIPMLEMGELPRFLQQSQEAEISYR----------- 106

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL---LI 173
            +    I      I  I   D+       +  P  +   ++   S  +    D +   + 
Sbjct: 107 -LLSEVIHDEGGNIAIIAGDDSMMHLGTINYYP--KGAILVFRISDAKPQHEDLVLVKVT 163

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
                  + +  +   G+    ++LN  Y   T E    E I 
Sbjct: 164 IQGRDFFMFRQYLENAGKE-SFVALNPAYENIT-EFDRYEVIG 204


>gi|302335133|ref|YP_003800340.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
 gi|301318973|gb|ADK67460.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
          Length = 335

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 5/104 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +     +T   LA   G+   S  K +         +P  + + KI    + TI 
Sbjct: 5   DNLQHLRATRGMTQEQLAMMVGVSRQSVTKWESERA-----YPEMDKLLKICQVFDCTID 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            L+    +      K+                   +        
Sbjct: 60  DLVQGDLTTRAGEPKRAMPQEAGDSIGYEEHCRSHALRLAVSVG 103


>gi|293570577|ref|ZP_06681629.1| prophage Lp2 protein 9 [Enterococcus faecium E980]
 gi|291609365|gb|EFF38635.1| prophage Lp2 protein 9 [Enterococcus faecium E980]
          Length = 126

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K +   I  + E+ +   + L RK GL+ ++ NK +        R  STE + K+    N
Sbjct: 3   KDLVNRIIDLREKRDWNQAELGRKIGLEKSAMNKIENGT-----RKVSTEELQKLAEVFN 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            T   LL    +     E    E+  +       
Sbjct: 58  VTTDYLLGRNQTPEWADENDLVELDKMLDSNVNM 91


>gi|289175228|emb|CBJ82031.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 401

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 41/175 (23%), Gaps = 11/175 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + +M E   L+   L +     P++  K +              S+ ++L        
Sbjct: 11  ARLTQMREARGLSKISLGKLVERSPSTVTKWENGNHSPDAEI--LHSLSRVLNCPVGWFT 68

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           + +                   L        G+F    F      +   V          
Sbjct: 69  KPVIKYEKKPVFFRTLSSTAKDLCISAERYMGWFQELSFKMQEYLDYPDVDIPHLDVRDY 128

Query: 131 YAIQTQD---TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
            AI  Q       + +    L +    D+L++           ++          
Sbjct: 129 RAIDDQLIERMAFECRKAWGLGIAPIDDLLLVMENA------GVVCSRFEQGSTV 177


>gi|254465481|ref|ZP_05078892.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
 gi|206686389|gb|EDZ46871.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H+ I  AI R   R   + S LA +AG+  ++ ++ +          PS E+++ + AA 
Sbjct: 5  HQMIAAAIQRERNRAGKSLSALAAQAGIAKSTLSQLEAGNGN-----PSVETLWALAAAL 59

Query: 66 N 66
           
Sbjct: 60 G 60


>gi|126698607|ref|YP_001087504.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|254974574|ref|ZP_05271046.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255091964|ref|ZP_05321442.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255100060|ref|ZP_05329037.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255305949|ref|ZP_05350121.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|255313699|ref|ZP_05355282.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255516381|ref|ZP_05384057.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255649481|ref|ZP_05396383.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|255655000|ref|ZP_05400409.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|260682647|ref|YP_003213932.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686247|ref|YP_003217380.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|296449749|ref|ZP_06891519.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296877934|ref|ZP_06901953.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|115250044|emb|CAJ67864.1| putative transcriptional regulator, HTH [Clostridium difficile]
 gi|260208810|emb|CBA61711.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212263|emb|CBE02999.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|296261473|gb|EFH08298.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296431002|gb|EFH16830.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 179

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I R+     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2  DIGEKIKRLRTEKQLTQEELANRCELSKGFISQLENNLT-----SPSIATLIDILEILGT 56

Query: 68 TICQLLDLPF 77
           + +  +   
Sbjct: 57 NLREFFNEID 66


>gi|291543170|emb|CBL16280.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63]
          Length = 164

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              KI + I  +  +  LT   L  K G+   + +  +          P  E +  +  
Sbjct: 1  MDQIKIGKFIATLRRQSGLTQEKLGEKIGVTNKTISPWENGNY-----MPDIEMLQLLAK 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPL 92
            N +I +LL           K   E  +
Sbjct: 56 EFNVSINELLAGQKMSDEEFRKNADENII 84


>gi|27469304|ref|NP_765941.1| hypothetical protein SE2386 [Staphylococcus epidermidis ATCC
          12228]
 gi|57865991|ref|YP_187629.1| Cro/CI family transcriptional regulator [Staphylococcus
          epidermidis RP62A]
 gi|242243285|ref|ZP_04797730.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|251811329|ref|ZP_04825802.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|282874681|ref|ZP_06283563.1| DNA-binding protein [Staphylococcus epidermidis SK135]
 gi|293367617|ref|ZP_06614269.1| conserved hypothetical protein [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|27316854|gb|AAO06029.1|AE016752_62 conserved hypothetical protein [Staphylococcus epidermidis ATCC
          12228]
 gi|57636649|gb|AAW53437.1| transcriptional regulator, Cro/CI family [Staphylococcus
          epidermidis RP62A]
 gi|242233234|gb|EES35546.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|251805196|gb|EES57853.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|281296605|gb|EFA89117.1| DNA-binding protein [Staphylococcus epidermidis SK135]
 gi|291318187|gb|EFE58581.1| conserved hypothetical protein [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|319399817|gb|EFV88065.1| helix-turn-helix family protein [Staphylococcus epidermidis
          FRI909]
 gi|329723842|gb|EGG60369.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU144]
 gi|329734356|gb|EGG70670.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU028]
 gi|329736140|gb|EGG72413.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU045]
          Length = 67

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R     + LA+KAG+   + +  +R         PS  +  KI     E + 
Sbjct: 3  NRLKELRARDGYNQTELAKKAGISRQTVSLIERNDFT-----PSILTAIKIARIFGEPVE 57

Query: 71 QLLDLPFSDG 80
           +  +   D 
Sbjct: 58 DIFIMEEEDF 67


>gi|328464777|gb|EGF36092.1| putative transcriptional regulator [Lactobacillus helveticus MTCC
          5463]
          Length = 65

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          A+ +  E   LT   LA KAG+  ++  + +R          ST+++ K+ +A N+T+
Sbjct: 9  ALLKAREDAGLTQRELAEKAGVPQSTVARIERGYST------STKTLSKLASAMNKTM 60


>gi|323466137|gb|ADX69824.1| Putative transcriptional regulator [Lactobacillus helveticus H10]
          Length = 98

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          A+ +  E   LT   LA KAG+  ++  + +R          ST+++ K+ +A N+T+
Sbjct: 42 ALLKAREDAGLTQRELAEKAGVPQSTVARIERGYST------STKTLSKLASAMNKTM 93


>gi|302869889|ref|YP_003838526.1| helix-turn-helix domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|315501351|ref|YP_004080238.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|302572748|gb|ADL48950.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315407970|gb|ADU06087.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 241

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + R  E+  LT   LA ++GL   +  + +R      +R PS  +  ++LAA   
Sbjct: 9   EIARTLRREREQAGLTQQALAARSGLSQAAIARIERG-----DRLPSLTAAERLLAALGR 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
            +   ++   S       +     L               
Sbjct: 64  QLRIEVEPLDSHLDAALDEMAGTVLAERIEVLRLDRIMDA 103


>gi|167580903|ref|ZP_02373777.1| transcriptional regulator, XRE family protein [Burkholderia
          thailandensis TXDOH]
          Length = 132

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++  AI        LT + LA    L+  + ++ +R       R P+   + ++  A + 
Sbjct: 20 RVGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGT-----RMPTLHRLQQLSDALDC 74

Query: 68 TICQ 71
          ++ Q
Sbjct: 75 SVDQ 78


>gi|161507836|ref|YP_001577800.1| putative transcriptional regulator [Lactobacillus helveticus DPC
          4571]
 gi|160348825|gb|ABX27499.1| putative transcriptional regulator [Lactobacillus helveticus DPC
          4571]
          Length = 90

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          A+ +  E   LT   LA KAG+  ++  + +R          ST+++ K+ +A N+T+
Sbjct: 34 ALLKAREDAGLTQRELAEKAGVPQSTVARIERGYST------STKTLSKLASAMNKTM 85


>gi|21232394|ref|NP_638311.1| polymerase V subunit [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|21114172|gb|AAM42235.1| polymerase V subunit [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 159

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 10/121 (8%)

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVP--------EIRSPHNGIYAIQTQDTRHKTQDTSML- 148
             +         P       +G P        +    +  +         ++ +  SM+ 
Sbjct: 15  GPACLDPVPLCLPVSALRIQLGFPSPAEDFQDDELDLNRVLIRNPPATFLYRAEGWSMIL 74

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
                GDIL+++ +++   GD +L        V K+L       I+L S +       + 
Sbjct: 75  AGVCDGDILVVDRSVRPIQGDMVLAIWDGNQPVCKILQ-VAVDHIELHSRSPHCAPIVLA 133

Query: 209 M 209
            
Sbjct: 134 P 134


>gi|332653833|ref|ZP_08419577.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332516919|gb|EGJ46524.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 252

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  +     L+   LA K  +   S +K +          P  E I K+       
Sbjct: 39  LGEKICTLRTGKGLSQEDLAAKLEVSRQSVSKWETGQSV-----PDLEKIIKLADLFGVN 93

Query: 69  ICQLLDLPFSDGRT 82
           + +L+         
Sbjct: 94  VDELVREGERPQPP 107


>gi|229192127|ref|ZP_04319095.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876]
 gi|228591334|gb|EEK49185.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876]
          Length = 118

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  + +   LT   +    G+   + +K ++         PS E+I K+    N  
Sbjct: 4  IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKI-----PSRENIEKLADFFNVP 58

Query: 69 ICQLLDLPFSDGRTTEK 85
             L     +  +++  
Sbjct: 59 TDYLFGKSDNSIKSSNN 75


>gi|118579884|ref|YP_901134.1| molybdate metabolism transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118502594|gb|ABK99076.1| transcriptional regulator of molybdate metabolism, XRE family
           [Pelobacter propionicus DSM 2379]
          Length = 368

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 44/174 (25%), Gaps = 32/174 (18%)

Query: 3   SFSHKKIWEA--------IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           + +H  I           I +  E    +   LA +AGL     +  +    +      +
Sbjct: 12  TVTHSIIMSREEIPLSNHIKKFREERGWSQQELAERAGLSRAGVSAIE--TGKLVPSTVA 69

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             ++ K+ A   E + Q+               +     +     +              
Sbjct: 70  ALALAKVFACPVEELFQVGGQAELHWA--WPPLQAPCRCWRAMVSNRLLLYPVEHS---- 123

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
                 P    PH+G++           +       +      ++ ++     G
Sbjct: 124 ------PLGMVPHDGVFR----------EGRLFENPFSDPYRTLVMASCDPAAG 161


>gi|293610621|ref|ZP_06692921.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826965|gb|EFF85330.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123811|gb|ADY83334.1| DNA-binding protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + + R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N
Sbjct: 6   EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L++ P +  +     +            +            + +  +  P     
Sbjct: 61  IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +  + + + +     +  +++ L  +   L +        GD +           K + 
Sbjct: 120 LSEPHPVGSVEHIIVVEGKALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166

Query: 187 S--RRGRSIDLMSL 198
                G    L+S 
Sbjct: 167 RALETGTKALLISE 180


>gi|293605930|ref|ZP_06688300.1| XRE family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
 gi|292815717|gb|EFF74828.1| XRE family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
          Length = 106

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             +  ++   +    +   LT S LA + GL  +  +  +           S E +   
Sbjct: 26 PLLTPGQLGSVLQAARKAQGLTQSALAIRIGLSQSRVSHLELH-----PHELSVEQLITW 80

Query: 62 LAATN 66
           +A  
Sbjct: 81 CSALG 85


>gi|289626698|ref|ZP_06459652.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646258|ref|ZP_06477601.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866821|gb|EGH01530.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L     T+
Sbjct: 4   GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58

Query: 70  CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                     G+                  + + +    PS    F      P     ++
Sbjct: 59  ADFFTFHQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAP---GADS 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              P + S       +              +                   GD        
Sbjct: 116 GEEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PGDGYYFPTTL 159

Query: 178 GDIVAKVLISRRGRSIDLMSLN 199
                    +      +++S N
Sbjct: 160 PH----RFRNIGQDEAEIISSN 177


>gi|152988204|ref|YP_001349378.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963362|gb|ABR85387.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 195

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 42/171 (24%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+  +  L+   LAR A +        +   +          +    +   +
Sbjct: 22  EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRIAAALGVLFPD 81

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                  D    +      +  E        + +    +   +  G     V  P+    
Sbjct: 82  LVQAAATDRSRINAVAWVGRHPESRATLLASAPARREVELWAWSLGPGERYVSEPDAAGW 141

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              +  I+ +           +                VN GD ++   R 
Sbjct: 142 REMVLVIEGRLRLELADGERCIAAGDFHAFASDQPYAYVNDGDEVVRFTRN 192


>gi|262046886|ref|ZP_06019846.1| predicted protein [Lactobacillus crispatus MV-3A-US]
 gi|260572868|gb|EEX29428.1| predicted protein [Lactobacillus crispatus MV-3A-US]
          Length = 74

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +   K   + + R  +   LT   LA + G   T+ ++ +         +PS   + +
Sbjct: 1  MMTMQAKLFGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLS-----FPSKRRLSE 55

Query: 61 ILAATNETICQ 71
          I       +  
Sbjct: 56 IAHFLGVKVDW 66


>gi|251798465|ref|YP_003013196.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546091|gb|ACT03110.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 112

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S   I E I  + ++   +   LA +A ++ +   + +R       + P+ + + K
Sbjct: 1  MNEISR-NIGENIRAIRKQKGFSQEQLALRAEINGSYMGQVERGE-----KSPTVDVLSK 54

Query: 61 ILAATNETICQLLDLPFSDGRTT 83
          I  A    + QL+ +P +    +
Sbjct: 55 IAHALQCPLEQLVHMPGTPHEDS 77


>gi|160914483|ref|ZP_02076698.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991]
 gi|158433641|gb|EDP11930.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991]
          Length = 251

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S  H+KI   I  M +  N+    L  +  +   + +K +          P+   +  
Sbjct: 1  MESLDHEKIGHFISEMRKAKNMKQKELGDQLFVSDKTISKWENGIS-----MPNIVLLAP 55

Query: 61 ILAATNETICQ 71
          +    + ++ +
Sbjct: 56 LAELLDISVNE 66


>gi|54027183|ref|YP_121425.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54018691|dbj|BAD60061.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 136

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I    E   ++   LA  AG+     ++ +R       R PS E + +I  A   
Sbjct: 16 DIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERG-----LRNPSAEVLAQIAKALRV 70

Query: 68 TICQLLDLPFSDGRTTEKKEK 88
          +   L        +      +
Sbjct: 71 SSEVLYVRAGYLEQRPHGPVR 91


>gi|328545047|ref|YP_004305156.1| XRE family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326414789|gb|ADZ71852.1| XRE family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 207

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 43/156 (27%), Gaps = 10/156 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESIFKI 61
           +I + +  +  +   +   LAR +G+   S ++ +   +       GR        + ++
Sbjct: 31  QIADRLKALRLQRGWSLDDLARLSGVSRASLSRLENAEVSASAATLGRLCAAHGMPLSRL 90

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +    E    L+           +       +  P     G    G  P   + +    P
Sbjct: 91  MYLVEEGFAPLIRYSDQPLWRDPETGFRRRAVSPPAQALAGEVLEGSLPPATRISYERPP 150

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                H+ +      D                GD L
Sbjct: 151 RPGLEHHLVLL----DGALAVSLDGTRHTLSAGDCL 182


>gi|312862452|ref|ZP_07722695.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
           F0396]
 gi|319945713|ref|ZP_08019964.1| cro/CI family transcriptional regulator [Streptococcus australis
           ATCC 700641]
 gi|311102095|gb|EFQ60295.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
           F0396]
 gi|319748073|gb|EFW00316.1| cro/CI family transcriptional regulator [Streptococcus australis
           ATCC 700641]
 gi|328945360|gb|EGG39513.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK1087]
 gi|332364441|gb|EGJ42213.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK1059]
          Length = 170

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 49/189 (25%), Gaps = 34/189 (17%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1   MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    N T  QL             KE E+       +         +       + +  
Sbjct: 55  IAEYFNATPTQLF---------GTSKEIELEKSVLESNEYSDKVSEILKAVKYIEDFLET 105

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA-------IQVNCGDRLLI 173
                          Q                 GD L ++          Q   G  +  
Sbjct: 106 DGQYLEDLLYLTRGNQLYT------------EDGDELYIDPTSQKRTLHNQYEPGFIVAR 153

Query: 174 KPRTGDIVA 182
                +++ 
Sbjct: 154 DKSPLELLI 162


>gi|307129602|ref|YP_003881618.1| MunI regulatory protein [Dickeya dadantii 3937]
 gi|306527131|gb|ADM97061.1| MunI regulatory protein [Dickeya dadantii 3937]
          Length = 89

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  + +  +  +  L+    A K GLD T  +  +R       R P+ E I  I     
Sbjct: 27 RFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGV-----RNPTLEVIGVIADGLE 80


>gi|302189655|ref|ZP_07266328.1| e14 prophage; putative phage repressor [Pseudomonas syringae pv.
           syringae 642]
          Length = 138

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 4/114 (3%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++ + + + R+      + + LA+  G      ++S+    E   R P+   I  +  A 
Sbjct: 21  NESLAQRLQRLRNAAGKSQAALAKLCGWS----SQSRVGNYESGTREPTLGDIELMAKAL 76

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                 LL    +   T    E         PS    +        G     V 
Sbjct: 77  GVPYGVLLIGEDAAAATRALSEPSNIAEVEQPSRMYRYPIVSWVAAGEWSEAVE 130


>gi|326201072|ref|ZP_08190944.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325988640|gb|EGD49464.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 213

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  + +   ++   LA + G+   + +K +          P  E I  +      
Sbjct: 2  NISDRIQSLRKTKGISQEQLADELGVSRQAVSKWESGQS-----MPDIEKIILMSEYFKI 56

Query: 68 T 68
          T
Sbjct: 57 T 57


>gi|255284549|ref|ZP_05349104.1| UDP-glucose 6-dehydrogenase [Bryantella formatexigens DSM 14469]
 gi|255264903|gb|EET58108.1| UDP-glucose 6-dehydrogenase [Bryantella formatexigens DSM 14469]
          Length = 505

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S   + E   R+ +  +LT   LA   G++    ++ ++         PS   + K
Sbjct: 5  MKKLSLPLLAETTARLRKEKSLTQQQLAELTGINRAMLSRLEKQNY-----LPSIPQLEK 59

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
          +         +L         + E+       
Sbjct: 60 LGEILGFEPAELFTEATETAASAEETSSAPEH 91


>gi|254410170|ref|ZP_05023950.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC
          7420]
 gi|196183206|gb|EDX78190.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC
          7420]
          Length = 75

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +K    +    E    +   LA  AG+  T     +R       R  S E+I K+ 
Sbjct: 1  MTLREKFGADVRARREELGFSQEQLAELAGMHRTYVGSIERGE-----RNISLENIVKLC 55

Query: 63 AATN 66
           A  
Sbjct: 56 EALQ 59


>gi|66396007|ref|YP_240340.1| ORF046 [Staphylococcus phage ROSA]
 gi|62636427|gb|AAX91538.1| ORF046 [Staphylococcus phage ROSA]
          Length = 107

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +  +I + I ++ + +N+  +  A K G++ ++ ++ +    +        E I +I 
Sbjct: 1  MRTSAEIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSGK-----IPMEDIAEIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89
           A   T   LL          + +   
Sbjct: 56 NALKVTPEYLLLKNRQTENEVQHRAAH 82


>gi|323136745|ref|ZP_08071826.1| hypothetical protein Met49242DRAFT_1213 [Methylocystis sp. ATCC
           49242]
 gi|322398062|gb|EFY00583.1| hypothetical protein Met49242DRAFT_1213 [Methylocystis sp. ATCC
           49242]
          Length = 233

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 63/230 (27%), Gaps = 24/230 (10%)

Query: 11  EAIDRMAERHNLTPSGLA-RKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + + +       + +  A R+ G   +++   +    +              ++      
Sbjct: 3   DRLKKARISAGYSTATDAIRRFGWKGSTYRAHENSQNQYDAETAKIYGQAYGVSPGWLLT 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG---GFFDSGVFPTGNKWNTVGVPEIRSP 126
            +    P +      +  +      F P       G +        +       P    P
Sbjct: 63  GEGDMSPRTAAAYLAEPREGARNACFVPLKGKVAAGIWSEVFLAEKDDTQQRRTPLPTDP 122

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL----NSAIQVNCGDRLLIKPRTG---- 178
                  +        +  S+    ++GD +      ++  ++  GD ++I+        
Sbjct: 123 RFP----EEIQFDLVIEGASLNRFAQEGDYIRCIDARDADAEIQDGDLVVIERMREKTLR 178

Query: 179 DIVAKVLISRRGRS-IDLMSLNCCYPVDTV-------EMSDIEWIARILW 220
           +I  + L     R      S +  +    V          +I  I +ILW
Sbjct: 179 EISGRRLQRNGDRHEFWPESDDPRWQAPLVAKNGLSESGEEIRVIGKILW 228


>gi|311894296|dbj|BAJ26704.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 208

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++   +  +     L+ S LAR++G+   + +  +        R P+ E+++ +  A  
Sbjct: 14 RVGLRLRELRVARGLSLSELARRSGVGKATLSGLESGT-----RNPTLETLYALTTALG 67


>gi|310830237|ref|YP_003965337.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
 gi|308753143|gb|ADO44286.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I   +  + +   LT S LA ++GL  ++ +K +   +      P+ ++I  +     
Sbjct: 24 IAARLRALRKEAGLTLSDLAMRSGLAASTLSKIENEQM-----SPTYDTILSLAEGLG 76


>gi|288870099|ref|ZP_06112925.2| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288868454|gb|EFD00753.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 67

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I  M ++  L+   LA+K G+   + N  +    + 
Sbjct: 9  IRSMRKQQGLSQEELAKKCGVSRQTINAIENNKYDP 44


>gi|260103128|ref|ZP_05753365.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
 gi|260083038|gb|EEW67158.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
          Length = 98

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          A+ +  E   LT   LA KAG+  ++  + +R          ST+++ K+ +A N+T+
Sbjct: 42 ALLKAREDAGLTQRELAEKAGVPQSTVARIERGYST------STKTLSKLASAMNKTM 93


>gi|239814040|ref|YP_002942950.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800617|gb|ACS17684.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 195

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 32/117 (27%), Gaps = 5/117 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + +I + +  +     L+   LA   G+  +  +  +R         P+   + K+    
Sbjct: 9   NDRIAQRVRDLRADRGLSLEALAAHCGVSRSMISLIERGES-----SPTAVLLEKLATGL 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              +  L + P        +   ++                G   +      +  P 
Sbjct: 64  GVPLASLFEAPVPASGPVSRLADQLQWRDPHSGYVRRNVSPGGSASPIHIVEILFPP 120


>gi|119383229|ref|YP_914285.1| XRE family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372996|gb|ABL68589.1| transcriptional regulator, XRE family [Paracoccus denitrificans
           PD1222]
          Length = 204

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  + ER   + +  A + G+ P++ ++ +      R   P+ + + KI+   +    
Sbjct: 16  ERLRALRERKGWSLNRAAEEVGVPPSTLSRIEN-----RKMSPTLDLLLKIVRTFDMHPN 70

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            +           E               +
Sbjct: 71  DVFSGRPDQQEKQEISVSRASDPALIELPN 100


>gi|323482910|ref|ZP_08088310.1| hypothetical protein HMPREF9474_00059 [Clostridium symbiosum
          WAL-14163]
 gi|323403769|gb|EGA96067.1| hypothetical protein HMPREF9474_00059 [Clostridium symbiosum
          WAL-14163]
          Length = 106

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                + + I+ + E+   +   LA+++G+  ++ +       +     P+  ++ K+ 
Sbjct: 1  MMDEGYVLKRIEELCEKEGWSHYVLAKRSGISQSTISNMFSRTNQ-----PTFITVAKVC 55

Query: 63 AATNETICQLLDLPFS 78
           A   T+ Q  D    
Sbjct: 56 DAFGITMAQFFDSEQH 71


>gi|303326709|ref|ZP_07357151.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
 gi|302862697|gb|EFL85629.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
          Length = 108

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  +  +H L+   L+  +G+     ++ +R         PS + + ++  A   +
Sbjct: 9  LGKRIRELRVKHGLSQEKLSELSGISSRHISEMERGESN-----PSFQVMEQLTFALGVS 63

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          + +  D          + E    L+ F 
Sbjct: 64 MKEFFDFEHHADDEAIRDELCRMLVGFS 91


>gi|295398102|ref|ZP_06808151.1| XRE family transcriptional regulator [Aerococcus viridans ATCC
           11563]
 gi|294973621|gb|EFG49399.1| XRE family transcriptional regulator [Aerococcus viridans ATCC
           11563]
          Length = 263

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 30/221 (13%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +K++ E I ++ ++  ++    ++  G   ++ +  +          P+ E I  I 
Sbjct: 1   MEQNKRLGERIKKIRKKLGMSQLEFSKAIGATKSAVSNWENGYN-----APNNERIKAIA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              N T+  LL    +D                            +    N  + V    
Sbjct: 56  NLGNTTVDALLYGSLNDRVGNLLNAAIDSDNPTYNKKLDDLITDYLVKHENLIDIV---- 111

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIV 181
                   Y     D     +         +   + +N   IQ    D  +I    G   
Sbjct: 112 ------IGYNPDADDENIDIEQAMKENFINQNLPVFINKFDIQAQDDDEDIINKFIG--Y 163

Query: 182 AKVLISRRGRSID---------LMSLNCCYPVDTVEMSDIE 213
            K +I     + +         L  +N            IE
Sbjct: 164 VKSIIPFDVNTFEGVKKSIFYTLEQINPK---IVYTQETIE 201


>gi|257881839|ref|ZP_05661492.1| phage transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257817497|gb|EEV44825.1| phage transcriptional regulator [Enterococcus faecium 1,231,502]
          Length = 114

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          ++E +  + ++  ++ S L  + G    S  K        + + P  E++ K+    + +
Sbjct: 2  LFERVKELCKKRGISISELENRIGFGKNSIYKW-------KTQSPKIETLQKVADYFHVS 54

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93
             LL            +E+++ + 
Sbjct: 55 TDYLLGRTDDPNAGVAPEERKLTVE 79


>gi|254502876|ref|ZP_05115027.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222438947|gb|EEE45626.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +   I +AI R   +  ++ S LA+ AGL  ++ ++ +          PS E+++ 
Sbjct: 1  MTPIT--LIAKAIQRERLKAGMSLSALAKTAGLAKSTLSQLEAGQGN-----PSVETLWA 53

Query: 61 ILAATNETI 69
          I +A N   
Sbjct: 54 IASALNVPF 62


>gi|91794584|ref|YP_564235.1| peptidase S24, S26A and S26B [Shewanella denitrificans OS217]
 gi|91716586|gb|ABE56512.1| peptidase S24, S26A and S26B [Shewanella denitrificans OS217]
          Length = 135

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 11/123 (8%)

Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
                            P         S  + +    +       Q  SM  +    GD+
Sbjct: 1   MRVIPISARAGITGFESPAAEYHQLGLSLDDLLVTHPSATFIGLAQGDSMQDVGIFDGDV 60

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           LI++       GD ++     G+ V K++       + L S N  Y    +   D   I 
Sbjct: 61  LIVDRHETARNGDVIVANFN-GEFVCKII--DTKSRLLLSS-NEQYQAVAIHDYDTFSIE 116

Query: 217 RIL 219
            ++
Sbjct: 117 GVV 119


>gi|116751125|ref|YP_847812.1| molybdate metabolism transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700189|gb|ABK19377.1| transcriptional regulator of molybdate metabolism, XRE family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 374

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 6/116 (5%)

Query: 1   MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M+  S  +++   +    +   L+ S LA + G+   +    +          P+T    
Sbjct: 1   MSMGSVKERVVCNLKSARKARGLSQSELAGRVGVKRQAIYDMESGRY-----LPNTALAL 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            I       +  L  L  S+        ++        + +        +P   KW
Sbjct: 56  YIARELGCRVEDLFVLEESEEEQPVTLVEKAGAANPRVAVASVRERLVAYPVDGKW 111


>gi|323486452|ref|ZP_08091776.1| hypothetical protein HMPREF9474_03527 [Clostridium symbiosum
          WAL-14163]
 gi|323400264|gb|EGA92638.1| hypothetical protein HMPREF9474_03527 [Clostridium symbiosum
          WAL-14163]
          Length = 106

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                + E I+ + ++   +   LA+++G+  ++ +       +     P+  ++ KI 
Sbjct: 1  MMDEGYVLERIEELCDKEGWSHYVLAKRSGISQSTISNMFSRTNQ-----PTFITVAKIC 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           A   T+ Q  +       T E+++     
Sbjct: 56 DAFGITMAQFFNSKKHLDLTEEQEDILCMF 85


>gi|315612472|ref|ZP_07887385.1| XRE family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
 gi|315315453|gb|EFU63492.1| XRE family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
          Length = 71

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+    I  + ++  L+   LA + G+   + +  +    +      S E+  K+    
Sbjct: 2  RKQTQNRIKELRKQSRLSQQALADQIGVFRNTISNWETGYSQ-----ISLENAKKVAEYF 56

Query: 66 N 66
           
Sbjct: 57 G 57


>gi|260587029|ref|ZP_05852942.1| transcriptional regulator [Blautia hansenii DSM 20583]
 gi|331086463|ref|ZP_08335542.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|260542519|gb|EEX23088.1| transcriptional regulator [Blautia hansenii DSM 20583]
 gi|330410521|gb|EGG89949.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 143

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I +       T   LA  +GL  ++    +        R+PS+E + KI  +   +
Sbjct: 3  VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGN-----RFPSSEQLEKIANSLKIS 57

Query: 69 ICQLLDLPFSDGRTTEK 85
             + D  F    +   
Sbjct: 58 PYAMSDPNFDTYVSVMH 74


>gi|320009434|gb|ADW04284.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 167

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61 ILAATNET 68
          +  A   +
Sbjct: 56 VAKALRIS 63


>gi|239928988|ref|ZP_04685941.1| signal peptidase protein [Streptomyces ghanaensis ATCC 14672]
 gi|291437327|ref|ZP_06576717.1| signal peptidase protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340222|gb|EFE67178.1| signal peptidase protein [Streptomyces ghanaensis ATCC 14672]
          Length = 145

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD L+++   ++  GD ++++       +V K    RR     ++  
Sbjct: 22  EVTGPSMVPTLHHGDRLLVHYGARIKRGDVVVLRHPFQQDLLVVKRAAERREGGWWVLGD 81

Query: 199 NCCYP-----VDTVEMSDIEWIARI 218
           N  Y         V   ++  + R+
Sbjct: 82  N-AYAGGDSTDYGVVPDEL-VLGRV 104


>gi|225011082|ref|ZP_03701546.1| transcriptional regulator, XRE family [Flavobacteria bacterium
          MS024-3C]
 gi|225004802|gb|EEG42760.1| transcriptional regulator, XRE family [Flavobacteria bacterium
          MS024-3C]
          Length = 64

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  +  RH LT   LA K G+   + N  ++   +     PS    FK+    +  I  +
Sbjct: 5  IKELRARHQLTQEDLAHKVGVSRQTINAIEKGKFD-----PSLPLAFKLAHLFHTPIEGI 59

Query: 73 LDLPF 77
               
Sbjct: 60 FTHES 64


>gi|218133396|ref|ZP_03462200.1| hypothetical protein BACPEC_01261 [Bacteroides pectinophilus ATCC
          43243]
 gi|217992269|gb|EEC58273.1| hypothetical protein BACPEC_01261 [Bacteroides pectinophilus ATCC
          43243]
          Length = 47

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
           I   I +  +   +T   +A + G+   + NK +     G
Sbjct: 2  DIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSNG 42


>gi|156974896|ref|YP_001445803.1| hypothetical protein VIBHAR_02615 [Vibrio harveyi ATCC BAA-1116]
 gi|156526490|gb|ABU71576.1| hypothetical protein VIBHAR_02615 [Vibrio harveyi ATCC BAA-1116]
          Length = 142

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 16/143 (11%)

Query: 11  EAIDRMAERHNLTPSGLARK--------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           E + R+ E   LT   LA K        A +DP + ++ +R         P+T  + K+L
Sbjct: 4   EYLKRLREEVGLTQKELATKLNLASVDFASIDPVTISRWERGTT-----APTTVKVIKVL 58

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                    L+    S     +K   +  + Y   S                 + +  P 
Sbjct: 59  RVL---TTDLMPFLSSLPVEPDKSIFDEIVEYRFKSPWAKLMSDSYEAPTQCKDVLEAPL 115

Query: 123 IRSPHNGIYAIQTQDTRHKTQDT 145
           + S  +             +   
Sbjct: 116 LESSQDDYLNSLKHFFASLSLGC 138


>gi|47564876|ref|ZP_00235920.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|228984110|ref|ZP_04144296.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|47558249|gb|EAL16573.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|228775638|gb|EEM24018.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 117

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I ++ +  N+T   L    G+   + +  ++       + P  E++ KI    N T
Sbjct: 2  IGEIIKKLRKEKNITQEQLGAAVGVSKMAISYFEKG-----KKAPGRETLEKIADFFNTT 56


>gi|297588232|ref|ZP_06946875.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC
          53516]
 gi|297573605|gb|EFH92326.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC
          53516]
          Length = 179

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E I  +  +  LT   LA ++ L     ++ +R         PS +S+  +L A   
Sbjct: 2  EIGEKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLT-----SPSVDSLNDLLNALGT 56

Query: 68 TICQLLDLP 76
           +       
Sbjct: 57 DMATFFMDK 65


>gi|18313906|ref|NP_560573.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2]
 gi|18161474|gb|AAL64755.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2]
          Length = 516

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I  + E+  L+ + LA+ +G+  ++    +R  +      P+  +++ I  A   
Sbjct: 4  DVGSRIAELREKRGLSLTALAKLSGVSKSTLWGIERGEVV-----PTVSTLWNIANALGV 58

Query: 68 TICQLLDLP 76
          T  +L+   
Sbjct: 59 TFGELITYD 67


>gi|298385979|ref|ZP_06995536.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298261207|gb|EFI04074.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 236

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 55/209 (26%), Gaps = 21/209 (10%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           S LA   G+   + +         RNR      + K+          L            
Sbjct: 24  SELASYLGVSRATVSNW-----GARNRIDFHLLLNKMRDVD-LNWLLLGKGSPKHPAKFC 77

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY--------AIQTQ 136
           + E     +    +            T          +    +   Y        +I   
Sbjct: 78  ESELAKGEVQIIHNPKTVEAIDDRSVTLYDITAAANLKTMLTNKQQYTVGKIQIPSIPLC 137

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGD---IVAKVL-ISRR 189
           D        SM P+ + GDI+        N    G+  L+         +  K +  S R
Sbjct: 138 DGAVYISGDSMYPILKSGDIIGFKEINSFNNLIYGEMYLVSFTIEGDEYLAVKYVNHSDR 197

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              + L+S N  +    +    I  +A +
Sbjct: 198 EGYLKLVSYNTHHDPMDIPFDTINAMAIV 226


>gi|284045488|ref|YP_003395828.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949709|gb|ADB52453.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 84

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I ++     L+   LA  AG+ P   ++ +R   +     P   ++ ++  A   +
Sbjct: 13 LARTIRQLRRDRELSQEALANAAGVHPKHLSEIERGNKD-----PRASTVARLADALGVS 67

Query: 69 ICQLLDLPFSDGR 81
          I +L   P  D  
Sbjct: 68 IGELYGQPGGDEP 80


>gi|77465797|ref|YP_355300.1| hypothetical protein RSP_3771 [Rhodobacter sphaeroides 2.4.1]
 gi|77390215|gb|ABA81399.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 234

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 61/208 (29%), Gaps = 22/208 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +       +  + E   +    L+  AG+  +      R         P   + + 
Sbjct: 13  MQKKTLDAFVRGLQIVMEAEGIKMKPLSVAAGMGESGVRDLIRNES-----SPKVANAYA 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      T+ +++ +  +           I +     +G+           G+    V  
Sbjct: 68  LARELGRTVDEIIQIGMTGDLNARPAHAPIAVAGCVGAGARVDLLDAYEK-GDGMYHVAR 126

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI------QVNCGDRLLIK 174
           P    PH             + +  SM+PLYR G +L    A       +       + +
Sbjct: 127 PPQLKPHG--------IVAVEVKGESMMPLYRPGSVLFYTRAAAEGVPVEALNT-PCVCE 177

Query: 175 PRTGDIVAKVLISRR-GRSIDLMSLNCC 201
              G    KV+       +  L+SLN  
Sbjct: 178 DADGRAWLKVVKVGSQEGTFSLLSLNPD 205


>gi|70729282|ref|YP_259019.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68343581|gb|AAY91187.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 104

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  AI R  +   LT + L  K G DP + ++ +          PS E++F +     
Sbjct: 6  LGAAIKRYRKVAGLTQAELGEKTGFDPKTISRFETGTYT-----PSVEALFLLAEVLG 58


>gi|332142295|ref|YP_004428033.1| hypothetical protein MADE_1014505 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552317|gb|AEA99035.1| hypothetical protein MADE_1014505 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 215

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 23/183 (12%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW--PSTESIFKILAATNETICQLLDLP 76
              LT    A+  G+   +F+           +    +T+ I K  A        +    
Sbjct: 23  EKGLTQQKAAKILGISQPAFSYYLSGRNPSAKKSMALNTDIIRKFAAMVGCKPSDIDSDL 82

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQ 136
                      K    + +  SG      S           V  P          A+   
Sbjct: 83  TDVNTVVSGLTKAWVPVKYALSGMESTMKSL---------AVNFP----------AVPKD 123

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
               +  D       +KG  +I + A +V+  D +++     ++   +L     + +   
Sbjct: 124 CFAIEV-DVENYDGLKKGQHIICDPASKVHEHDYVIVIKD-NEVFYGLLRYLSAQWVVTY 181

Query: 197 SLN 199
           SLN
Sbjct: 182 SLN 184


>gi|289551814|ref|YP_003472718.1| Signal peptidase I [Staphylococcus lugdunensis HKU09-01]
 gi|315660014|ref|ZP_07912872.1| signal peptidase I LepB [Staphylococcus lugdunensis M23590]
 gi|289181345|gb|ADC88590.1| Signal peptidase I [Staphylococcus lugdunensis HKU09-01]
 gi|315494915|gb|EFU83252.1| signal peptidase I LepB [Staphylococcus lugdunensis M23590]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 142 TQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
               SM P ++  + ++++   +    ++ GD ++ K        K LI + G  ++   
Sbjct: 32  VSGDSMYPTFKDREKVVVSKISKTLDHIDNGDIVVFKEDKDRDFIKRLIGKPGDKVEYKG 91

Query: 198 L 198
            
Sbjct: 92  D 92


>gi|257868500|ref|ZP_05648153.1| DNA binding protein [Enterococcus gallinarum EG2]
 gi|257802664|gb|EEV31486.1| DNA binding protein [Enterococcus gallinarum EG2]
          Length = 70

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  + E   L+   LA   G+   + N  +          PS E   +I      +
Sbjct: 3  VINRLRSIREEQGLSQGELAAIMGVSRQTINAIETHKYN-----PSLELALRIAHYFKLS 57

Query: 69 ICQ 71
          + +
Sbjct: 58 VEE 60


>gi|108803769|ref|YP_643706.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108765012|gb|ABG03894.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM
           9941]
          Length = 155

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  + ER  L+   L R+AGL P S  +++    EG     S E+++++  A   +   
Sbjct: 89  LRALRERAGLSQEELERRAGLAPGSVARAE-GAGEGDEIRASVETLWRLARALETSPTH 146



 Score = 36.3 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             +  + ER  L+   L+   G   T   + +R    
Sbjct: 8  GARLRELRERAGLSQEELSEIVGYSRTWVAELERQSRT 45


>gi|325680803|ref|ZP_08160341.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324107583|gb|EGC01861.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 217

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 6/110 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +   +T + LA K G+   + +K +          P    + ++      +
Sbjct: 21  IGKFIAACRKEKKMTQAQLAEKLGISDRAVSKWETGKC-----MPDASLMPELCEQLGIS 75

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I  L +          K+  E  +L    +             G    +V
Sbjct: 76  INDLFNGRRVTM-ENYKEAAEAAMLQLKENEEKKNRMMLDLEIGMGIPSV 124


>gi|309777338|ref|ZP_07672299.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914879|gb|EFP60658.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 190

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  +   H L+   LA    +   S +K ++   +     PS+E++ ++    +  I  L
Sbjct: 4  IKMLRTEHQLSQESLAALLDVSRQSVSKWEKGLSK-----PSSENLARLAEIFSVHIQDL 58

Query: 73 LDLPFSDGRTTEKKEKEIPLL 93
          ++      R+         +L
Sbjct: 59 MNDSIQLERSFHTTHFFTDML 79


>gi|254719638|ref|ZP_05181449.1| hypothetical protein Bru83_08855 [Brucella sp. 83/13]
 gi|265984647|ref|ZP_06097382.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306837728|ref|ZP_07470596.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653]
 gi|264663239|gb|EEZ33500.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306407184|gb|EFM63395.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653]
          Length = 470

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 4  FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S +KI+    I R+     LT + +A   G+ P+  N  +R       R  + + + K+
Sbjct: 1  MSERKIFTGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55

Query: 62 L 62
           
Sbjct: 56 A 56


>gi|210620597|ref|ZP_03292145.1| hypothetical protein CLOHIR_00088 [Clostridium hiranonis DSM
          13275]
 gi|210155311|gb|EEA86317.1| hypothetical protein CLOHIR_00088 [Clostridium hiranonis DSM
          13275]
          Length = 71

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I  AI    +   +T   LA   G++    ++ +          PS +++ ++     +
Sbjct: 10 QIVRAILESRKETGITQKQLAEITGINQADISRYENGSGN-----PSLKTLKRLAEGMGK 64

Query: 68 T 68
          T
Sbjct: 65 T 65


>gi|206580811|ref|YP_002238246.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|290509290|ref|ZP_06548661.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55]
 gi|206569869|gb|ACI11645.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|289778684|gb|EFD86681.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55]
          Length = 189

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/124 (9%), Positives = 36/124 (29%), Gaps = 8/124 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   +  + ++   + S LA + G+      + +R         P+  +++KI    N
Sbjct: 5   QHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLN 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEI 123
                 +    S   +    +++  ++                     G    +    + 
Sbjct: 60  VPFSAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKG 119

Query: 124 RSPH 127
              H
Sbjct: 120 VIEH 123


>gi|56709057|ref|YP_165102.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56680742|gb|AAV97407.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 188

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + +  + ER  L+   LA+++G+  ++ +  +     G    PS  ++ ++L     
Sbjct: 10 ELGQRLRVIRERAGLSQRALAKRSGIPNSTISLIE-----GGKINPSVSTLRRVLGGIPI 64

Query: 68 TICQLLDLPFSDGRTTE 84
           +           + + 
Sbjct: 65 GLSDFFAFEPEQEKASF 81


>gi|147668752|ref|YP_001213570.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|147668945|ref|YP_001213763.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|289432070|ref|YP_003461943.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|146269700|gb|ABQ16692.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
 gi|146269893|gb|ABQ16885.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
 gi|288945790|gb|ADC73487.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 71

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 1  MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          MT  +  ++  E I  + ++  ++   LA +AG+  T     +R       R PS ++I 
Sbjct: 1  MTKKTIEQRFGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGE-----RNPSLKNIE 55

Query: 60 KILAATNETICQ 71
           I  A    I  
Sbjct: 56 AIAKALEVPISD 67


>gi|317488862|ref|ZP_07947392.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA]
 gi|316911936|gb|EFV33515.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA]
          Length = 176

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 38/135 (28%), Gaps = 7/135 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + ++ ++  ++   +A   G+   + +  +          PS +    +      +
Sbjct: 2   VGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQG-----APSLDKAADLARLCGVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+            +    P          G      +   +  + + + +  S   
Sbjct: 57  LDDLVADEVEVVVADPDQAAGKPRDLHVLRHLEGKQCRICYRYTH--DEIDIFKAVSMPE 114

Query: 129 GIYAIQTQDTRHKTQ 143
               +   D   + +
Sbjct: 115 KARVLDVSDGWLRVE 129


>gi|294633078|ref|ZP_06711637.1| DNA-binding protein [Streptomyces sp. e14]
 gi|292830859|gb|EFF89209.1| DNA-binding protein [Streptomyces sp. e14]
          Length = 482

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/168 (8%), Positives = 35/168 (20%), Gaps = 19/168 (11%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R+   H +    +AR  G+  +  N+ ++       R  +   + +I           
Sbjct: 16  LRRLRREHGMNQVEMARALGISTSYANQIEQ-----SRRPLTATVLLRIAEVFGVD---- 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
              P       + +              G              +   +       +  Y 
Sbjct: 67  ---PEFFSEADQDRLAAELRTALADEACGAPSPDPRELAEAVRDHPELARALVALHRRYR 123

Query: 133 I-QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
               Q     +      P              +V   D         +
Sbjct: 124 DTAEQAAALASPGGGGAPALLPPG----EPHDEVR--DFFYTHHNHFE 165


>gi|262197947|ref|YP_003269156.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262081294|gb|ACY17263.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 187

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +   +   + ++ E   ++ + +A+ AG+   +++  +R         P+   + +  AA
Sbjct: 9  TGAHLAHNVKQLREARGMSQAQIAKLAGIPRPTWSTLERGDGN-----PTLSVLLRAAAA 63

Query: 65 TNETICQ 71
             ++ +
Sbjct: 64 LQVSLEE 70


>gi|169634707|ref|YP_001708443.1| hypothetical protein ABSDF3388 [Acinetobacter baumannii SDF]
 gi|169794401|ref|YP_001712194.1| hypothetical protein ABAYE0206 [Acinetobacter baumannii AYE]
 gi|213159023|ref|YP_002321021.1| transcriptional regulator, XRE family [Acinetobacter baumannii
           AB0057]
 gi|215481956|ref|YP_002324138.1| Helix-turn-helix family protein [Acinetobacter baumannii
           AB307-0294]
 gi|260556833|ref|ZP_05829050.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301345186|ref|ZP_07225927.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056]
 gi|301510677|ref|ZP_07235914.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058]
 gi|301595815|ref|ZP_07240823.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059]
 gi|332854786|ref|ZP_08435549.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013150]
 gi|332868898|ref|ZP_08438475.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013113]
 gi|332872792|ref|ZP_08440757.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6014059]
 gi|169147328|emb|CAM85189.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|169153499|emb|CAP02656.1| conserved hypothetical protein [Acinetobacter baumannii]
 gi|193078630|gb|ABO13673.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
 gi|213058183|gb|ACJ43085.1| transcriptional regulator, XRE family [Acinetobacter baumannii
           AB0057]
 gi|213989083|gb|ACJ59382.1| Helix-turn-helix family protein [Acinetobacter baumannii
           AB307-0294]
 gi|260409439|gb|EEX02740.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|332727788|gb|EGJ59192.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013150]
 gi|332733046|gb|EGJ64247.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013113]
 gi|332738953|gb|EGJ69815.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6014059]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 66/194 (34%), Gaps = 21/194 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + + R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N
Sbjct: 6   EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGN-----PSIETLWALCVALN 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L++ P +  +     +            +            + +  +  P     
Sbjct: 61  IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGE-DR 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
            +  + + + +     +  +++ L  +   L +        GD +           K + 
Sbjct: 120 LSEPHPVGSVEHIIVVEGRALVGLIDEAVELGV--------GDYICYPADQ-----KHIF 166

Query: 187 S--RRGRSIDLMSL 198
                G    L+S 
Sbjct: 167 RALETGTKALLISE 180


>gi|319794332|ref|YP_004155972.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596795|gb|ADU37861.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 199

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 8/118 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  + +   L+ + LA  +G+     +K +R         P+   + ++ A    +
Sbjct: 19  IATRLLALRQAKGLSLAELAELSGVSKAMISKVERAQS-----SPTAVLLGRLAAGLGVS 73

Query: 69  ICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEI 123
           + QLL            + +    +   P +G      +    TG+      V +P  
Sbjct: 74  LAQLLTEEKEKEAPQRLRTKAMQEVWRDPEAGYLRRQVAERGATGSGVELVEVELPRS 131


>gi|296450909|ref|ZP_06892658.1| helix-turn-helix domain protein [Clostridium difficile NAP08]
 gi|296878611|ref|ZP_06902616.1| helix-turn-helix domain protein [Clostridium difficile NAP07]
 gi|296260281|gb|EFH07127.1| helix-turn-helix domain protein [Clostridium difficile NAP08]
 gi|296430418|gb|EFH16260.1| helix-turn-helix domain protein [Clostridium difficile NAP07]
          Length = 258

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I ++ +   ++   LA + G    + +K +         +P TE + ++      +
Sbjct: 3  LGEKIFKLRKEKGISQEALAEQIGTTRQAISKWENNQG-----FPETEKLLQLSNIFEVS 57


>gi|163757981|ref|ZP_02165069.1| hypothetical protein HPDFL43_00110 [Hoeflea phototrophica DFL-43]
 gi|162284270|gb|EDQ34553.1| hypothetical protein HPDFL43_00110 [Hoeflea phototrophica DFL-43]
          Length = 103

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 21/50 (42%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           + ++  LT   +A K G   ++ ++ +    +   R  + E   ++L  
Sbjct: 40 ALRKQAGLTQEQMAEKLGTKKSNISRLESLNSDVSPRLATLEDYARVLGY 89


>gi|15924088|ref|NP_371622.1| Cro/CI family transcriptional regulator protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926683|ref|NP_374216.1| hypothetical protein SA0949 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282710|ref|NP_645798.1| hypothetical protein MW0981 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485936|ref|YP_043157.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651707|ref|YP_185971.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161040|ref|YP_493696.1| hypothetical protein SAUSA300_0998 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194797|ref|YP_499594.1| hypothetical protein SAOUHSC_01045 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267591|ref|YP_001246534.1| XRE family transcriptional regulator [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393646|ref|YP_001316321.1| hypothetical protein SaurJH1_1180 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221176|ref|YP_001331998.1| hypothetical protein NWMN_0964 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979421|ref|YP_001441680.1| hypothetical protein SAHV_1090 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509281|ref|YP_001574940.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140502|ref|ZP_03564995.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316351|ref|ZP_04839564.1| hypothetical protein SauraC_09456 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731709|ref|ZP_04865874.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733667|ref|ZP_04867832.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005885|ref|ZP_05144486.2| hypothetical protein SauraM_05430 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795171|ref|ZP_05644150.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258407120|ref|ZP_05680269.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258421788|ref|ZP_05684709.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258423598|ref|ZP_05686488.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258436152|ref|ZP_05689135.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258443359|ref|ZP_05691702.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258444969|ref|ZP_05693286.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|258449856|ref|ZP_05697954.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|258451955|ref|ZP_05699971.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258454955|ref|ZP_05702918.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
           A5937]
 gi|262048684|ref|ZP_06021566.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30]
 gi|262052206|ref|ZP_06024412.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3]
 gi|269202709|ref|YP_003281978.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894125|ref|ZP_06302356.1| DNA-binding protein [Staphylococcus aureus A8117]
 gi|282925282|ref|ZP_06332939.1| DNA-binding protein [Staphylococcus aureus A9765]
 gi|282928620|ref|ZP_06336217.1| DNA-binding protein [Staphylococcus aureus A10102]
 gi|284024023|ref|ZP_06378421.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus 132]
 gi|294848087|ref|ZP_06788834.1| DNA-binding protein [Staphylococcus aureus A9754]
 gi|295405902|ref|ZP_06815711.1| DNA-binding protein [Staphylococcus aureus A8819]
 gi|296276499|ref|ZP_06859006.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297208264|ref|ZP_06924694.1| cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297246372|ref|ZP_06930216.1| DNA-binding protein [Staphylococcus aureus A8796]
 gi|300912341|ref|ZP_07129784.1| cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304381344|ref|ZP_07363997.1| cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|13700899|dbj|BAB42195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246868|dbj|BAB57260.1| similar to transcriptional regulator Cro/CI family [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21204148|dbj|BAB94846.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244379|emb|CAG42807.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285893|gb|AAW37987.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127014|gb|ABD21528.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202355|gb|ABD30165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740660|gb|ABQ48958.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946098|gb|ABR52034.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373976|dbj|BAF67236.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721556|dbj|BAF77973.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368090|gb|ABX29061.1| possible transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724523|gb|EES93252.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728367|gb|EES97096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257789143|gb|EEV27483.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257841275|gb|EEV65720.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257842121|gb|EEV66549.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257846299|gb|EEV70323.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257848841|gb|EEV72826.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257851449|gb|EEV75388.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257856091|gb|EEV79009.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|257856776|gb|EEV79679.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|257860170|gb|EEV83002.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257862835|gb|EEV85600.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
           A5937]
 gi|259159877|gb|EEW44915.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3]
 gi|259163140|gb|EEW47700.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30]
 gi|262074999|gb|ACY10972.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|269940593|emb|CBI48972.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282589659|gb|EFB94745.1| DNA-binding protein [Staphylococcus aureus A10102]
 gi|282592558|gb|EFB97568.1| DNA-binding protein [Staphylococcus aureus A9765]
 gi|282763611|gb|EFC03740.1| DNA-binding protein [Staphylococcus aureus A8117]
 gi|285816779|gb|ADC37266.1| putative DNA-binding protein [Staphylococcus aureus 04-02981]
 gi|294824887|gb|EFG41309.1| DNA-binding protein [Staphylococcus aureus A9754]
 gi|294969337|gb|EFG45357.1| DNA-binding protein [Staphylococcus aureus A8819]
 gi|296887003|gb|EFH25906.1| cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297176738|gb|EFH35998.1| DNA-binding protein [Staphylococcus aureus A8796]
 gi|300886587|gb|EFK81789.1| cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302332708|gb|ADL22901.1| transcriptional regulator Cro/CI family [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|302750922|gb|ADL65099.1| transcriptional regulator Cro/CI family [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340327|gb|EFM06268.1| cro/CI family transcriptional regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312829492|emb|CBX34334.1| helix-turn-helix family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130316|gb|EFT86303.1| possible transcriptional regulator [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315196128|gb|EFU26485.1| possible transcriptional regulator [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141086|gb|EFW32933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143143|gb|EFW34933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323440647|gb|EGA98357.1| transcriptional regulator [Staphylococcus aureus O11]
 gi|323441674|gb|EGA99320.1| transcriptional regulator [Staphylococcus aureus O46]
 gi|329313766|gb|AEB88179.1| Transcriptional regulator, XRE family [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329730799|gb|EGG67178.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 179

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 35/197 (17%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +    NLT   LA +  L     ++ +          PS E+   I+     
Sbjct: 2   NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126
           T  +      ++    +K+E+ I   Y       G+  + +    N+++   +     P 
Sbjct: 57  TPSEFFKDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111

Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183
             +      ++    +                      I +N G  +        +  K 
Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEIYQAQEEDVLYFKA 154

Query: 184 ----VLISRRGRSIDLM 196
                L +       ++
Sbjct: 155 RDNHRLSNESNNETRIL 171


>gi|325475695|gb|EGC78871.1| DNA-binding protein [Treponema denticola F0402]
          Length = 93

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          M+ F  ++    I+R+ +      L+   LA +A +     N  +        R PS ++
Sbjct: 1  MSVFLREQQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETG-----KRTPSLDT 55

Query: 58 IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
          + KI  A N     L      +    +K+  ++   +
Sbjct: 56 LLKICHALNINPAVLFSDTEEEKAEAKKQVLDMIQRW 92


>gi|254389013|ref|ZP_05004244.1| signal peptidase protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814949|ref|ZP_06773592.1| Signal peptidase [Streptomyces clavuligerus ATCC 27064]
 gi|326443320|ref|ZP_08218054.1| hypothetical protein SclaA2_19743 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702731|gb|EDY48543.1| signal peptidase protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327548|gb|EFG09191.1| Signal peptidase [Streptomyces clavuligerus ATCC 27064]
          Length = 127

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198
           +    SM P    GD L+++   +V  G   +++   +   ++ K L  RR     ++  
Sbjct: 16  EVTGPSMYPTLHHGDRLLVHYGARVRPGQVAVLRHPLQQDLLIVKRLAGRRDGGWWVLGD 75

Query: 199 NC 200
           N 
Sbjct: 76  NP 77


>gi|251798962|ref|YP_003013693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546588|gb|ACT03607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 122

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I  + E    T    A K G+   + +  ++       R P TE++ K       
Sbjct: 2  NIGNRIAGLREERKWTQEQTASKLGISRAALSHYEKN-----RREPDTETLAKFADLYQV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90
          TI  L+    +      +  +  
Sbjct: 57 TIDYLVGRTTNTQAALSEDVRNF 79


>gi|323463311|gb|ADX75464.1| transcriptional regulator, Cro/CI family [Staphylococcus
          pseudintermedius ED99]
          Length = 67

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R     + LA+KAG+   + +  +R G       PS  +  KI     
Sbjct: 3  NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNGFT-----PSILTAIKIARIFG 53


>gi|307266068|ref|ZP_07547614.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|306918937|gb|EFN49165.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +  + +   LT   +    G+   ++ K ++   E     PS ES+ KI      +
Sbjct: 2  IGERLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAE-----PSIESLIKIADYFQVS 56


>gi|291006644|ref|ZP_06564617.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 278

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 6/135 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT  +   +  AI  + ER  ++   L+++ GL   + +  +        R P+ E +  
Sbjct: 1   MTPRARA-LSAAIRSIRERSGVSGRELSKRLGLSHGTVSHWETG-----RRVPTPEDVAS 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L A   T  +   +       +E     + +   P   +G         +  +W  +G+
Sbjct: 55  LLTAAGITGDEKQRVVELARHASEPNWLTVGMPGIPQQLAGAVECERAASSIAEWAPMGL 114

Query: 121 PEIRSPHNGIYAIQT 135
           P +    +    I  
Sbjct: 115 PGLLQTADYARTISK 129


>gi|237797335|ref|ZP_04585796.1| putative UV resistance protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020185|gb|EGI00242.1| putative UV resistance protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 58

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY 202
              G  L+++ A     G+ ++        V K L  +      L S N  Y
Sbjct: 6   ILNGTKLVIDRARTHQVGNVVVAYID-NQPVVKRLDRQLNGGWMLSSDNPKY 56


>gi|261420641|ref|YP_003254323.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768311|ref|YP_004133812.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
 gi|261377098|gb|ACX79841.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61]
 gi|317113177|gb|ADU95669.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
          Length = 135

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E + ++ ++   T   LA +  +  +  +K +   +      P  +S+ K+    N 
Sbjct: 3  NLGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSL-----LPDVQSLEKLCQLFNI 57

Query: 68 T 68
          +
Sbjct: 58 S 58


>gi|212224500|ref|YP_002307736.1| Hypothetical transcription regulator [Thermococcus onnurineus
          NA1]
 gi|212009457|gb|ACJ16839.1| Hypothetical transcription regulator [Thermococcus onnurineus
          NA1]
          Length = 68

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  + E   LT   LA+  G+   +    ++   +     PS +  FKI     
Sbjct: 3  NRVRELREARGLTQEELAKALGVTRQTIIAIEKGKYD-----PSLKLAFKIARFFG 53


>gi|183981401|ref|YP_001849692.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183174727|gb|ACC39837.1| transcriptional regulatory protein [Mycobacterium marinum M]
          Length = 473

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             + R+ E H LT   LAR  GL  +  N+ +        R  +   +  +    +   
Sbjct: 7  GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQ-----RPITVSVLLALAERFDLPT 61

Query: 70 CQLLDLPF 77
                  
Sbjct: 62 HYFAPDSD 69


>gi|118617981|ref|YP_906313.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118570091|gb|ABL04842.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
          Length = 483

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             + R+ E H LT   LAR  GL  +  N+ +        R  +   +  +    +   
Sbjct: 17 GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQ-----RPITVSVLLALAERFDLPT 71

Query: 70 CQLLDLPF 77
                  
Sbjct: 72 HYFAPDSD 79


>gi|56421725|ref|YP_149043.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|56381567|dbj|BAD77475.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
          Length = 135

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E + ++ ++   T   LA +  +  +  +K +   +      P  +S+ K+    + 
Sbjct: 3  NLGETLKQLRKQRRWTQEELAEQLNVSRSQISKWENGSL-----LPDVQSLEKLCQLFDV 57

Query: 68 T 68
          +
Sbjct: 58 S 58


>gi|326390747|ref|ZP_08212300.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
 gi|325993141|gb|EGD51580.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
          Length = 67

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +  ++ LT   LA+  G+ P   ++ +R       R P  E+  KI    N TI ++
Sbjct: 4  LKELRMKYKLTQKELAKNLGITPDYVSQIERG------RIPGMETAIKIANFFNTTIDEI 57

Query: 73 L 73
           
Sbjct: 58 F 58


>gi|317128355|ref|YP_004094637.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
 gi|315473303|gb|ADU29906.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
          Length = 73

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I E I +  +   ++ S L+R  G+  +  +  +R       + PS E I +I  + N
Sbjct: 2  IGEIIRKKRKERGISLSELSRMTGVSKSYLSYIERGM----KKNPSIEVIKRIFHSLN 55


>gi|302873656|ref|YP_003842289.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307686620|ref|ZP_07629066.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302576513|gb|ADL50525.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 140

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E + ++     L+   LA  + +  T  ++ +    +     PS + + +I      + 
Sbjct: 4  GEFLKKLRAEKGLSQRQLADLSKISNTEISRMESGERQK----PSPKILKEIAPHLGISY 59

Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92
           +L+        T E ++    +
Sbjct: 60 RELMAQAGYIEETIEHEKYTEHI 82


>gi|238923032|ref|YP_002936545.1| hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656]
 gi|238874704|gb|ACR74411.1| Hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656]
          Length = 147

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I +       T   LA  +GL  ++    +        R+PS+E + KI  +   +
Sbjct: 3  VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGN-----RFPSSEQLEKIANSLKIS 57

Query: 69 ICQLLDLPFSDGRTTEK 85
             + D  F    +   
Sbjct: 58 PYAMSDPNFDTYVSVMH 74


>gi|271962441|ref|YP_003336637.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505616|gb|ACZ83894.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 99

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          ++ EA+    E+  LT S LA + GL   +  + +  G       P  E + + L  
Sbjct: 32 ELGEAVRLRREQLGLTQSELAERTGLKQPAVARFEAGGTMPTI--PMLERLAEALEM 86


>gi|225569026|ref|ZP_03778051.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM
           15053]
 gi|225161825|gb|EEG74444.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM
           15053]
          Length = 323

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +     E +  + ++   T   +A +  +   S +K +  G      +P  + + +
Sbjct: 1   MKEETKMGFAENLQFLRQKKGYTQEQIAEQLQVSRQSVSKWESGGS-----FPEMDKLLQ 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
           +       +  L+     +    E  E E  +  +  + S G 
Sbjct: 56  LSEMFQCGMDVLVQGDARNSYVEEHDEYEKHMNEYSRAISFGV 98


>gi|15963764|ref|NP_384117.1| hypothetical protein SMc02783 [Sinorhizobium meliloti 1021]
 gi|307302567|ref|ZP_07582324.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
 gi|307316102|ref|ZP_07595546.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|15072939|emb|CAC41398.1| Putative HTH-type transcriptional regulator [Sinorhizobium
          meliloti 1021]
 gi|306897942|gb|EFN28684.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|306903237|gb|EFN33827.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
          Length = 125

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EA+  +  R  ++   +A   G+ P   +  +     G+   PS + + +
Sbjct: 1  MTPF-----GEAVRELRRRKGVSQKEMAAAIGVSPAYLSALE----HGKRGAPSFDFLQR 51

Query: 61 ILAATNETICQ 71
          +    N    +
Sbjct: 52 VAGYFNVIWDE 62


>gi|27376226|ref|NP_767755.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349366|dbj|BAC46380.1| blr1115 [Bradyrhizobium japonicum USDA 110]
          Length = 196

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 40/127 (31%), Gaps = 9/127 (7%)

Query: 1   MTSFSHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M +   +K    I   +  +  +  +T + LA ++G+      + +R          +  
Sbjct: 1   MKTMDQQKLDRAIGRRLKTLRTQAGMTLNELAGRSGVSRAMIGRVERAQSSA-----TAA 55

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + K+ AA + T+  ++ L         +   +                     +G +  
Sbjct: 56  LLNKLCAALDVTLSDVVALAEKPPERLMRLADQPHWRDPDSGYRRRHASPPDAASGIEII 115

Query: 117 TVGVPEI 123
            V +P  
Sbjct: 116 VVDLPAG 122


>gi|284044033|ref|YP_003394373.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283948254|gb|ADB50998.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + ++I E +    +R  LT S LA +  L     ++ +R         PS  S+ ++  
Sbjct: 1  MTPEQIGERLRAARQRQELTLSALAERVELTKGFLSQVERGLT-----SPSVGSLLRLCE 55

Query: 64 AT 65
            
Sbjct: 56 VL 57


>gi|257054282|ref|YP_003132114.1| putative transcriptional regulator [Saccharomonospora viridis DSM
           43017]
 gi|256584154|gb|ACU95287.1| predicted transcriptional regulator [Saccharomonospora viridis DSM
           43017]
          Length = 201

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 32/132 (24%), Gaps = 3/132 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +     +T + LA   G+  ++ ++ +               + ++     + 
Sbjct: 12  VGPRLRALRRHRGITLAELATATGVSESTLSRLESGQRRATLEL--LLPLARVYNVPLDD 69

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +             T      +  +       G      + P          P+      
Sbjct: 70  LVGAPRTGDPRVHLTPIHRFGMTFVPLSRRPGGVQAFKMIIPARP-EPAEPTPQTHDGFE 128

Query: 129 GIYAIQTQDTRH 140
            +Y +  +    
Sbjct: 129 WLYVLNGRLRLV 140


>gi|39996460|ref|NP_952411.1| hypothetical protein GSU1358 [Geobacter sulfurreducens PCA]
 gi|39983340|gb|AAR34734.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
          Length = 800

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 38/157 (24%), Gaps = 23/157 (14%)

Query: 86  KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE-IRSPHNGIYAIQTQDTRHKTQD 144
             + +      P  +           G   +   V +         +  +      +   
Sbjct: 640 PFRLLGPEQARPYENCVPLYDFKIAAGGFSDEQQVDDCDWVELPEEFRPRKGLFVAQVVG 699

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT--------GDIVAKVLISRRGR----- 191
            SM      G   +   A   +   ++++            G    K+  S +       
Sbjct: 700 ESMNRRIPNGAWCLFRIASAGSRNGKVVLASHREIADNDTGGHYTVKIYESTKESFSDGT 759

Query: 192 ----SIDLMSLN--CCYPVDTV---EMSDIEWIARIL 219
               SI L   +    Y    +   +  D+  I  ++
Sbjct: 760 WRHASIILRPDSALPGYEPIVLSEEQAEDLRVIGELV 796


>gi|23099979|ref|NP_693445.1| post-exponential-phase response transcriptional regulator
           [Oceanobacillus iheyensis HTE831]
 gi|22778210|dbj|BAC14480.1| transcriptional regulator of post-exponential-phase responses
           (PbsX(xre)family) [Oceanobacillus iheyensis HTE831]
          Length = 108

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I ++     ++ S LA KAG+  +  +  +R         PS + I KI      T
Sbjct: 2   IGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQS----NPSIQFIEKISNVLGVT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           + +++    +D    +++  +I         S   F   
Sbjct: 58  VNEIILENNNDDADLDEEWMQIVQEAMKSGVSKEQFKEY 96


>gi|332971234|gb|EGK10197.1| XRE family transcriptional regulator [Desmospora sp. 8437]
          Length = 108

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/107 (9%), Positives = 32/107 (29%), Gaps = 2/107 (1%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  + ++  +T + LA+  G+D T+ +K +    E      + + I      + + +
Sbjct: 4   GQRLKELRKKRKITQAELAKVLGVDNTTISKWESNTYE--PEMTAIKEIADFFNVSADYL 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               ++P         +  +        +                  
Sbjct: 62  LGRTNVPSQFETEAAHRTDDPMDDLPQQAREDIEKFKEFIRQKYGIE 108


>gi|325291464|ref|YP_004277328.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325059317|gb|ADY63008.1| transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 121

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          EA+  + ER  +T   +A   G+ P   +  +     G+   PS + + +I    N    
Sbjct: 6  EAVRLLRERKGVTQKEMAAAIGVSPAYLSALE----HGKRGKPSFDLLQRIAGYFNIIWD 61

Query: 71 Q 71
          +
Sbjct: 62 E 62


>gi|297617997|ref|YP_003703156.1| XRE family transcriptional regulator [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297145834|gb|ADI02591.1| transcriptional regulator, XRE family [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 216

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I ++ E   LT   L +   +   + +K ++         P +E++ K+    N +
Sbjct: 4  VGSRIKQLREERGLTQEQLGKILNVQKAAISKYEKGHT-----LPDSEALKKLAKFFNVS 58

Query: 69 ICQLLDLPFSDGR 81
          +  LL L  +   
Sbjct: 59 VDYLLCLTDTREP 71


>gi|291539377|emb|CBL12488.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis
          XB6B4]
          Length = 393

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 11/68 (16%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT        E I     +  L     A K G+ P + +K +          PS E++  
Sbjct: 16 MTM------AENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQS-----CPSIENLCV 64

Query: 61 ILAATNET 68
          I    + +
Sbjct: 65 ISEILDVS 72


>gi|237795789|ref|YP_002863341.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657]
 gi|229262761|gb|ACQ53794.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657]
          Length = 152

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              ++   E I R+ +    +   LA   G+  T+ ++ ++         P   ++  +
Sbjct: 3  KKMINESFGEYITRLRKLKGYSQRKLALITGISNTTISRIEKNITT----NPDLNTLKLL 58

Query: 62 LAATNETICQLLDLPFSDGRTTEKKE 87
              N     +L+       +   K+
Sbjct: 59 AQHLNIDEIYMLEAAGYKDDSNHNKQ 84


>gi|257413729|ref|ZP_05591775.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia
          intestinalis L1-82]
 gi|257202528|gb|EEV00813.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia
          intestinalis L1-82]
          Length = 403

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 11/68 (16%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT        E I     +  L     A K G+ P + +K +          PS E++  
Sbjct: 26 MTM------AENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQS-----CPSIENLCV 74

Query: 61 ILAATNET 68
          I    + +
Sbjct: 75 ISEILDVS 82


>gi|167771688|ref|ZP_02443741.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM
          17241]
 gi|167666328|gb|EDS10458.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM
          17241]
          Length = 110

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +I + I ++ + H L+   LA + G+  T  +  +      +   P   ++   L 
Sbjct: 5  EIGQRIRKIRKAHGLSQESLAERVGISNTHMSHIETGNT--KLSLPVLVALADALD 58


>gi|120436831|ref|YP_862517.1| hypothetical protein GFO_2494 [Gramella forsetii KT0803]
 gi|117578981|emb|CAL67450.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 20/182 (10%)

Query: 52  WPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            PS   + K          +                     +      +   F SG    
Sbjct: 62  QPSKSVVEK-FENFYNLKIEDFKYDNFSEEALPVDFNSYMKIPIINHRARAGFLSGW--- 117

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNC 167
           G+      +P      +  Y  + +    +    SM         + D L+     +V+ 
Sbjct: 118 GDPEYIQELPTTLWEVDKEY--KGKYVCFEVTGDSMDNNTRESIVENDTLLCREIQRVHW 175

Query: 168 GDRL--------LIKPRTGDIVAKVLISR--RGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
            ++L        +I  R   I+ K ++        + L SLN  Y   TV M D+  I  
Sbjct: 176 KNKLHLHRWKNFVIVHREEGILIKRVLEHDTETGKLILQSLNPMYEDQTVYMDDLIAIFN 235

Query: 218 IL 219
           ++
Sbjct: 236 VI 237


>gi|296118462|ref|ZP_06837041.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968603|gb|EFG81849.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 5/133 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++    +L+ + LA   GL  +  N+ +        R  +   + +I       
Sbjct: 6   VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S      +   +   L   P       +            V +        
Sbjct: 61  ATFFSRDDDSRLLAEIQDVVQDKELCPTPVEFQELSELVYNHPSVARIMVDIHRRYRNAR 120

Query: 129 GIYAIQTQDTRHK 141
              ++ T   R +
Sbjct: 121 DKLSLATDTRRTR 133


>gi|288935233|ref|YP_003439292.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889942|gb|ADC58260.1| transcriptional regulator, XRE family [Klebsiella variicola At-22]
          Length = 189

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/124 (9%), Positives = 36/124 (29%), Gaps = 8/124 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   +  + ++   + S LA + G+      + +R         P+  +++KI    N
Sbjct: 5   QHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLN 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEI 123
                 +    S   +    +++  ++                     G    +    + 
Sbjct: 60  VPFSAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKG 119

Query: 124 RSPH 127
              H
Sbjct: 120 VIEH 123


>gi|257438062|ref|ZP_05613817.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii
          A2-165]
 gi|257199393|gb|EEU97677.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii
          A2-165]
          Length = 208

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + +   LT   LA    +  T+ +K +         +PS +S+ +I    + +I 
Sbjct: 8  EKLQELRKSRGLTQEELAEALFVSRTAISKWESGRG-----YPSIDSLKEISRYFSVSID 62

Query: 71 Q 71
          +
Sbjct: 63 E 63


>gi|218134985|ref|ZP_03463789.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990370|gb|EEC56381.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC
          43243]
          Length = 368

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + I  + +++  +   LA + G+   S +K +     G    P  + I K+     
Sbjct: 3  LADKIINLRKKNGWSQEELAERLGVSRQSVSKYE-----GAQSVPDLDKILKLSEIFG 55


>gi|254388551|ref|ZP_05003785.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|197702272|gb|EDY48084.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 202

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 7  MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 61

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L             + +   ++
Sbjct: 62 VAKALRISAETLYVRAGILDERDRDELETRAVI 94


>gi|307153159|ref|YP_003888543.1| transcriptional regulator of molybdate metabolism, XRE family
           [Cyanothece sp. PCC 7822]
 gi|306983387|gb|ADN15268.1| transcriptional regulator of molybdate metabolism, XRE family
           [Cyanothece sp. PCC 7822]
          Length = 377

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 7/155 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               K++   I ++  R  L+   LA+ AG+   + +  +               + K L
Sbjct: 1   MKQDKELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYA--PSATVALRLAKAL 58

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               E +  L D          +            +  GG                    
Sbjct: 59  GCRVEDLFWLEDDDAVIEAQPTESVPMGQPFRLSLAQVGG-----QLVAHPLIQEDAFRT 113

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                +G    ++QD+  K +  +   +  +  ++
Sbjct: 114 EIIAADGEGWRESQDSTVKVKLWTSADVIHRTVVI 148


>gi|297531429|ref|YP_003672704.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254681|gb|ADI28127.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3]
          Length = 135

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E + ++ ++   T   LA +  +  +  +K +   +      P  +S+ K+    N 
Sbjct: 3  NLGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSL-----LPDVQSLEKLCQLFNI 57

Query: 68 T 68
          +
Sbjct: 58 S 58


>gi|302524530|ref|ZP_07276872.1| predicted protein [Streptomyces sp. AA4]
 gi|302433425|gb|EFL05241.1| predicted protein [Streptomyces sp. AA4]
          Length = 178

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 53/190 (27%), Gaps = 24/190 (12%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I        LT   LA +AG+     ++ +R   +     PS E++ +I    +  +  
Sbjct: 5   RIREFRTLRGLTVRQLADQAGVSTGLISQVERGVTD-----PSLETMRRIAEVLDIPLFS 59

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPHNG 129
           L   P                 Y   S       +   P G K   +   +       + 
Sbjct: 60  LFQEPD----EETVAVIRHDDRYRISSPHHAITYTRASPGGAKLEVLEGVLEPGGVSSDE 115

Query: 130 IYAIQTQDTRHKTQDT------SMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           + +  +++                  + + GD    +S +              G   A+
Sbjct: 116 LRSHPSEECVVVIAGRLTVQVGEQTHVLKTGDSCHFDSTVPHR-------FRNDGRTTAR 168

Query: 184 VLISRRGRSI 193
            L+S    S 
Sbjct: 169 FLVSVTPPSY 178


>gi|227431010|ref|ZP_03913071.1| transcriptional regulator [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
 gi|227353202|gb|EEJ43367.1| transcriptional regulator [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
          Length = 118

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I +   ++A+   L+ S L  K G+  TS    K          P  E+I K     +
Sbjct: 2  ETILDRTKKLAKEKGLSLSELEEKIGIAKTSIYSWKSNI-------PKGETIQKTADVLD 54

Query: 67 ETICQLLDLPFSDGR 81
           +   LL        
Sbjct: 55 TSTDYLLGRTDDPTP 69


>gi|227522686|ref|ZP_03952735.1| possible transcriptional regulator [Lactobacillus hilgardii ATCC
          8290]
 gi|227090134|gb|EEI25446.1| possible transcriptional regulator [Lactobacillus hilgardii ATCC
          8290]
          Length = 159

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S   + + E I  + +R   + + +A+K G+D T+F+K K        R  S + + K
Sbjct: 29 MASHLEQSLAERIAYLQDRSQFSQADIAKKMGIDRTAFSKIKNGT-----RKVSADELNK 83

Query: 61 ILAATNET 68
          +      +
Sbjct: 84 LSEIFGVS 91


>gi|254169279|ref|ZP_04876111.1| CBS domain pair protein [Aciduliprofundum boonei T469]
 gi|289596725|ref|YP_003483421.1| transcriptional regulator, XRE family [Aciduliprofundum boonei
          T469]
 gi|197621756|gb|EDY34339.1| CBS domain pair protein [Aciduliprofundum boonei T469]
 gi|289534512|gb|ADD08859.1| transcriptional regulator, XRE family [Aciduliprofundum boonei
          T469]
          Length = 184

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            +I     R   +   LA+++G+  ++  K ++  +      PS     KI  A +E  
Sbjct: 5  LSSIKERRRRLGWSQKELAKRSGVSQSAITKIEKGDMN-----PSYTLAVKIFNALDEGE 59

Query: 70 CQLL 73
           +  
Sbjct: 60 REKY 63


>gi|310825925|ref|YP_003958282.1| DNA binding protein [Eubacterium limosum KIST612]
 gi|308737659|gb|ADO35319.1| DNA binding protein [Eubacterium limosum KIST612]
          Length = 113

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            K+   I  + +   LT   LA   G+   +    ++         PS    +KI     
Sbjct: 39  DKLKNRIKELRKEKGLTQLQLADAVGVSTRTIISLEKGQYN-----PSIMLAYKIARLFG 93

Query: 67  ETICQLLDLPFSDGRTTEK 85
            TI  L  L  +     E 
Sbjct: 94  TTIEALYCLEENLKNEMEN 112


>gi|187778373|ref|ZP_02994846.1| hypothetical protein CLOSPO_01966 [Clostridium sporogenes ATCC
          15579]
 gi|187771998|gb|EDU35800.1| hypothetical protein CLOSPO_01966 [Clostridium sporogenes ATCC
          15579]
          Length = 139

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +I + +     R +L  + LA+   +   + +  +        R P T ++ K
Sbjct: 1  MKKL--AEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSK 53

Query: 61 ILAATNETICQLLDLPFSDGR 81
          +    N ++  +L    +   
Sbjct: 54 LADFFNCSVDYILGRSENRNG 74


>gi|169335357|ref|ZP_02862550.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258095|gb|EDS72061.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 138

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I++ +  + + + LT   L+ K G+   +  K ++     
Sbjct: 2  IYKNLKDLRKNNGLTQEQLSEKIGVSRQAIGKWEKGESIP 41


>gi|153011249|ref|YP_001372463.1| hypothetical protein Oant_3929 [Ochrobactrum anthropi ATCC 49188]
 gi|151563137|gb|ABS16634.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC
          49188]
          Length = 483

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 5  SHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          S +KI+    I R+     LT + +A   G+ P+  N  +R       R  + + + K+ 
Sbjct: 15 SERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKLA 69


>gi|152964472|ref|YP_001360256.1| XRE family transcriptional regulator [Kineococcus radiotolerans
           SRS30216]
 gi|151358989|gb|ABS01992.1| transcriptional regulator, XRE family [Kineococcus radiotolerans
           SRS30216]
          Length = 194

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 9/132 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + +    +   LT + LA+ +G+   S  K +R   +     PS   + ++      
Sbjct: 14  RLAQVLRAARQARGLTTAALAQASGVSRGSVVKLERGDSQ-----PSAALLGRLCGPLGL 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T+ +L     +   T           +  P            P G       + EI  P 
Sbjct: 69  TLSELFARVEARTATGRLVRAASAPTWTDPVSGHRRRSLSPSPAGPAQ----LTEIVLPA 124

Query: 128 NGIYAIQTQDTR 139
                   Q   
Sbjct: 125 GAAVTYPAQAYA 136


>gi|15485444|emb|CAC67538.1| hypothetical transcriptional regulator [Streptococcus
          thermophilus]
          Length = 111

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + ++ +LT   LA K G+  +S+   +R       + P+ E++ KI    N +
Sbjct: 5  ERLKELRKQAHLTQVELASKLGIVQSSYADWERG-----KKKPTQENLVKIAQILNVS 57


>gi|25010888|ref|NP_735283.1| hypothetical protein gbs0833 [Streptococcus agalactiae NEM316]
 gi|77413146|ref|ZP_00789346.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae 515]
 gi|23095267|emb|CAD46477.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160847|gb|EAO71958.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae 515]
          Length = 71

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 15/40 (37%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   +  +  R  +  + LA+  G+   + +  +R     
Sbjct: 5  LKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTP 44


>gi|331086470|ref|ZP_08335549.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330410528|gb|EGG89956.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 143

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I +       T   LA  +GL  ++    +        R+PS+E + KI  +   +
Sbjct: 3  VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGN-----RFPSSEQLEKIANSLKIS 57

Query: 69 ICQLLDLPFSDGRTTEK 85
             + D  F    +   
Sbjct: 58 PYAMSDPNFDTYVSVMH 74


>gi|329725199|gb|EGG61688.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 179

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 56/197 (28%), Gaps = 35/197 (17%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +    NLT   LA +  L     ++ +          PS E+   I+     
Sbjct: 2   NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126
           T  +  +   ++    +K+E+ I   Y       G+  + +    N+++   +     P 
Sbjct: 57  TPSEFFEDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111

Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183
             +      ++    +                      I +N G  +        +  K 
Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEIYQAQEEDVLYFKA 154

Query: 184 ----VLISRRGRSIDLM 196
                L +       ++
Sbjct: 155 RDNHRLSNESNNETRIL 171


>gi|326332875|ref|ZP_08199132.1| putative signal peptidase protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325949233|gb|EGD41316.1| putative signal peptidase protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 124

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRG-----RSIDL 195
           K    SM P  R GD L +        G  ++ +   G +V K  + RR          L
Sbjct: 17  KVVGVSMEPTLRAGDRLWVAYGRTPVPGRVVVARLADGAVVVKRAVERRTTASGRSGWWL 76

Query: 196 MSLNCCYP 203
           +S N   P
Sbjct: 77  LSDNPAAP 84


>gi|294814036|ref|ZP_06772679.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326635|gb|EFG08278.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 217

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 22  MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 76

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
           +  A   +   L             + +   ++
Sbjct: 77  VAKALRISAETLYVRAGILDERDRDELETRAVI 109


>gi|293401810|ref|ZP_06645951.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304762|gb|EFE46010.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 371

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 8/109 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M      K+ E I  +  + N+T   LA   G+  +S +K +         +P    + +
Sbjct: 1   MKPL---KLGENIAALRRKANITQDQLANWIGVSKSSVSKWETNTS-----YPDIIFLPQ 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           +    N T+ +L+       +    +                       
Sbjct: 53  LATLFNVTVDELMGYEPQLTQEAIVELYHQLSDEIAHDSDEALKHCEEL 101


>gi|283787659|ref|YP_003367524.1| SOS response protein [Citrobacter rodentium ICC168]
 gi|282951113|emb|CBG90801.1| putative SOS response protein [Citrobacter rodentium ICC168]
          Length = 119

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 10/104 (9%)

Query: 98  SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
           +          FP+          E    +       +     +    SM         L
Sbjct: 16  APLFTEHCLAGFPSPAAD---YTEEELDLNAWCIRRPSATYFVRAIGDSMRNKGLHSGDL 72

Query: 158 ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
           ++        GD ++ +   G+   K L  +    + L+ +N  
Sbjct: 73  LVKPQQ----GDIVIAETD-GEFTVKRLQLKP--RVALLPMNPA 109


>gi|260460388|ref|ZP_05808640.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034033|gb|EEW35292.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum
           WSM2075]
          Length = 202

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 49/191 (25%), Gaps = 35/191 (18%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WP------------ 53
           ++   +  +     L+ + LA KAG+   + ++ +R     R +  WP            
Sbjct: 18  RVGRRVRALRLERGLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSAL 77

Query: 54  ---STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                +++  +      +   +        +                  + G        
Sbjct: 78  IADGNDAVNDLYCVRANSRRAIPVKSEGIAKALLSPPGATLTGMLVTVEANGGTAEAYAH 137

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-----------PLYRKGDILIL 159
            G+++  V              + +     K +  S             P   +  IL +
Sbjct: 138 AGHEFGYV------LAGEVELVVDSTKYVLK-EGDSFAFKSTLLHAFRNPGAEQCQILWV 190

Query: 160 NSAIQVNCGDR 170
           N+       D 
Sbjct: 191 NTTKPSEVRDG 201


>gi|238855118|ref|ZP_04645444.1| transcriptional regulator, XRE family [Lactobacillus jensenii
           269-3]
 gi|260664951|ref|ZP_05865802.1| predicted protein [Lactobacillus jensenii SJ-7A-US]
 gi|282934260|ref|ZP_06339535.1| transcriptional repressor [Lactobacillus jensenii 208-1]
 gi|313472501|ref|ZP_07812991.1| DNA-binding protein [Lactobacillus jensenii 1153]
 gi|238832258|gb|EEQ24569.1| transcriptional regulator, XRE family [Lactobacillus jensenii
           269-3]
 gi|239529934|gb|EEQ68935.1| DNA-binding protein [Lactobacillus jensenii 1153]
 gi|260561434|gb|EEX27407.1| predicted protein [Lactobacillus jensenii SJ-7A-US]
 gi|281301669|gb|EFA93938.1| transcriptional repressor [Lactobacillus jensenii 208-1]
          Length = 138

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I E +  M     ++   LA K  +   S +K +    +        + + K+   + 
Sbjct: 2   DQINERLKEMRLNAGMSQEELASKLNVSRQSVSKWE--TGDSLPDILKLKQLSKLYDVSI 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           + I    +    +      ++  +       +  G  + +           +
Sbjct: 60  DYIVGNTEFDRKEDTQKTSEQAVLKKQKAKRALKGVLWGTACMLAAFGMEVL 111


>gi|225420264|ref|ZP_03762567.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme
          DSM 15981]
 gi|225041081|gb|EEG51327.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme
          DSM 15981]
          Length = 177

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   +  +     LT   LA +  L     ++ +R         PS  ++  IL     
Sbjct: 2  QIGAKLKELRILKGLTQEELADRTELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56

Query: 68 TICQLLDLPF 77
          +I +  +   
Sbjct: 57 SIGEFFNETQ 66


>gi|313884124|ref|ZP_07817890.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312620571|gb|EFR31994.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 138

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
               +   I    +   +T   LAR+ G+   + +K +R        +P   SI  +  
Sbjct: 1  MKDDSLGRLIANRRKELGMTQLDLARRMGVTDKAVSKWERDLS-----FPDLSSIPNLAE 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
            + ++  L+ +    G+  +  EK I  L      
Sbjct: 56 TLDYSLVDLMQVKEKTGKPQKVAEKPIITLILTVVP 91


>gi|297153993|gb|ADI03705.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 443

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R+ ER  L+   LA++  +  ++ ++         +  P  E + ++  AT E + +L
Sbjct: 24  LRRLKERSGLSYGALAKRLDMSTSTLHRYCNGRAVPNDYAP-VERLARVCRATGEELVEL 82

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                       ++           +G GG     + P      
Sbjct: 83  HRRWILADAARVRRGPGPDGTEPEGAGPGGSGSEKMAPGSTGSE 126


>gi|297617508|ref|YP_003702667.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145345|gb|ADI02102.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 314

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           I  + ++  L+    A++ G  P + N+ +   +      P+  ++ K L
Sbjct: 75  IRSLRKKTGLSQREFAKRLGWSPATVNRYENGALP----SPAHNTVLKWL 120


>gi|229145225|ref|ZP_04273615.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
 gi|228638236|gb|EEK94676.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
          Length = 113

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + ++  LT   LA +  L        +R       R  S  ++ KI      +
Sbjct: 2  VGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGE-----RNISMLTLQKIAVGLEVS 56

Query: 69 ICQ 71
            +
Sbjct: 57 PDE 59


>gi|30020775|ref|NP_832406.1| MerR family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|229127990|ref|ZP_04256973.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
 gi|29896327|gb|AAP09607.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC
          14579]
 gi|228655457|gb|EEL11312.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
          Length = 119

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + ++  LT   LA +  L        +R       R  S  ++ KI      +
Sbjct: 8  VGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGE-----RNISMLTLQKIAVGLEVS 62

Query: 69 ICQ 71
            +
Sbjct: 63 PDE 65


>gi|77458352|ref|YP_347857.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
 gi|77382355|gb|ABA73868.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 53/193 (27%), Gaps = 22/193 (11%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L     ++
Sbjct: 4   GSRLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSVSSLKKLLEGIPMSL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPH 127
                             +          G          P+           P   S  
Sbjct: 59  ADFFTFDQPPREHQY-VFRANEQPDLGRHGLRLLLIGASVPSRQMRLLREQYAPGASSGE 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLI 186
             I   + ++    T+ T           L ++  + V   GD                 
Sbjct: 118 EPIVHAEGEECGLVTRGTVE---------LTVDGQVSVLSAGDGYYFPTTLPH----KFR 164

Query: 187 SRRGRSIDLMSLN 199
           +      +++S N
Sbjct: 165 NIGADEAEIISAN 177


>gi|323126522|gb|ADX23819.1| Cro/CI family transcriptional regulator [Streptococcus
          dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 112

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + +   LT   +A+K G+   ++   ++   +        + + +I      +
Sbjct: 4  ERLKTLRKEAGLTQEEVAKKLGISRPAYTYWEKGEKKPTP-----DKLTQIANLFGVS 56


>gi|288917479|ref|ZP_06411845.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288351182|gb|EFC85393.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 98

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++  ++  + +R   +   LAR AG+  ++  + +  G       P  E + + L 
Sbjct: 32 ELGRSVRELRQRRGWSQEELARAAGMTQSAVARFEAGGTV--PTLPVLERLAEALD 85


>gi|256545809|ref|ZP_05473165.1| UDP-glucose 6-dehydrogenase [Anaerococcus vaginalis ATCC 51170]
 gi|256398505|gb|EEU12126.1| UDP-glucose 6-dehydrogenase [Anaerococcus vaginalis ATCC 51170]
          Length = 490

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 17/181 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S +K+ + +    +  NLT   L    G++ T  +K +          PS E +  
Sbjct: 1   MKKLSIEKLSKTVSDKRKEKNLTQKKLEEITGINRTMISKLESQNYI-----PSIEQLES 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +       I  L     +        +K    +    +G  G   + +    N    V +
Sbjct: 56  LSDTLEFEITDLFQDDKNKVNKKISNKKYN--IAVAGTGYVGLSIATLLSQHNHVTAVDI 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD---ILILNSAIQVNCGDRLLIKPRT 177
            + +                  QD  +     + D      L+        D ++I   T
Sbjct: 114 IKEKVDLINERKSP-------IQDEYIEKYLEEKDLDLTATLDGEAAYRNADFVVIAAPT 166

Query: 178 G 178
            
Sbjct: 167 N 167


>gi|228932646|ref|ZP_04095521.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228827018|gb|EEM72777.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 156

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I  +      T   LA K G+     +  +R         P+ E + K+    N
Sbjct: 9  IKELRIAKGWTQKSLAEKLGVSSQVISNWERAYT-----SPNQEDLIKLAKVFN 57


>gi|228943047|ref|ZP_04105548.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228955929|ref|ZP_04117866.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228976620|ref|ZP_04137063.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228783089|gb|EEM31225.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228803756|gb|EEM50438.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228816632|gb|EEM62756.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar berliner ATCC 10792]
          Length = 60

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I     +   T   LA+K+G+   + ++ +     G  ++P+ ++I KI  A      +L
Sbjct: 2  IREARLQKGWTQLDLAKKSGVPQPTISQIE----SGERKYPTYQNIKKIAEALGIKTEEL 57

Query: 73 L 73
          +
Sbjct: 58 M 58


>gi|323350704|ref|ZP_08086365.1| XRE family transcriptional regulator [Streptococcus sanguinis
           VMC66]
 gi|322123124|gb|EFX94815.1| XRE family transcriptional regulator [Streptococcus sanguinis
           VMC66]
          Length = 169

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 38/145 (26%), Gaps = 5/145 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 3   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL    +         ++    Y+    S GF+             +       P 
Sbjct: 58  TTDYLLLEDSNKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152
                +            ++    +
Sbjct: 118 KFTALVWLTFFLLIASTMAINKALK 142


>gi|320008066|gb|ADW02916.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 190

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          +   I R  E+  ++ + LAR+AGL   + ++ +              +I 
Sbjct: 17 VGAQIRRRREQRGMSSAELARRAGLGKATLSQLEAGRGNPTIETLDALAIA 67


>gi|257791197|ref|YP_003181803.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
 gi|317488068|ref|ZP_07946646.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA]
 gi|325831244|ref|ZP_08164536.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257475094|gb|ACV55414.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
 gi|316912819|gb|EFV34350.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA]
 gi|325486845|gb|EGC89292.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 147

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 31/124 (25%), Gaps = 3/124 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + + R+ +  NLT   LARK  +   + ++ +               +          
Sbjct: 3   IGDVLVRIRKERNLTQEDLARKLYVTRQAVSRWENGETTPGI---DMCKLIAATCDVPVA 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   +              +E              + S  +  G       + E+     
Sbjct: 60  LLLEMPDGAYCQSCGMPFYQEKDHGTEADGSLSADYCSWCYANGAFLEDETLEELIERCA 119

Query: 129 GIYA 132
              A
Sbjct: 120 PFMA 123


>gi|326440324|ref|ZP_08215058.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 275

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/45 (13%), Positives = 14/45 (31%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
             +  + +    T   LA++ G   T  +  +        R+  
Sbjct: 17 GARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPTPRFAK 61


>gi|212703137|ref|ZP_03311265.1| hypothetical protein DESPIG_01176 [Desulfovibrio piger ATCC
          29098]
 gi|212673403|gb|EEB33886.1| hypothetical protein DESPIG_01176 [Desulfovibrio piger ATCC
          29098]
          Length = 117

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I    +      +  A + G+   S ++ +R  +    R+   E I +IL  +   
Sbjct: 17 VGANITARRKLLGWNQAAFAERLGMGADSLSRIERGLVA--PRFQRLEEIAEILECSVAE 74

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
          +    +            ++E
Sbjct: 75 LFMTQEDLEKYRINFSSPKQE 95


>gi|307154482|ref|YP_003889866.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306984710|gb|ADN16591.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 80

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + E+  LT   LA K G+  T+    ++            E + ++  A      +L
Sbjct: 9  IAILREKAGLTQRELADKVGVTETTIRNYEKGRSVLEW----IERVIRLCDALECAPNEL 64

Query: 73 LDLPF 77
          ++   
Sbjct: 65 IEYLE 69


>gi|182418674|ref|ZP_02949950.1| helix-turn-helix domain protein [Clostridium butyricum 5521]
 gi|237669723|ref|ZP_04529700.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
 gi|182377451|gb|EDT75006.1| helix-turn-helix domain protein [Clostridium butyricum 5521]
 gi|237654797|gb|EEP52360.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
          Length = 171

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   I ++ +  N++   +A+K  +  ++++  +        R P+  ++ KI    + 
Sbjct: 8  KVGNNIKKIRKEKNISQKDMAKKLNMPSSTYSNYENNN-----REPNALTLKKIADVLSV 62

Query: 68 TICQ 71
           +  
Sbjct: 63 DVHD 66


>gi|329577403|gb|EGG58858.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467]
          Length = 180

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T  Q       + +    +E+             G+    + P  N+     V      +
Sbjct: 57  TPEQFFSQQPLEQKIAYNEEESTLYY----DEEHGYELKWLIPASNEKEMEPVIITFDKN 112

Query: 128 NGI 130
              
Sbjct: 113 GEY 115


>gi|323490759|ref|ZP_08095961.1| DNA-binding protein [Planococcus donghaensis MPA1U2]
 gi|323395641|gb|EGA88485.1| DNA-binding protein [Planococcus donghaensis MPA1U2]
          Length = 172

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 51/158 (32%), Gaps = 14/158 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN-- 66
           I   +  + +   LT   LA +  +  +  ++ +R          + ES+ KI  A N  
Sbjct: 6   IGVTLKSLRKERKLTLKELAEQTNVSISFLSQVERGKS-----SVTLESLRKIADALNVD 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++    +   +D  +  +K     L +     +       + P      + G P   S 
Sbjct: 61  PSLFFANETEKTDWESRLEKFHYKDLSHGVKEANLVPMLVIMKPA----ESEGNPFAHSG 116

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
           +  ++ +         +         +   ++ ++  +
Sbjct: 117 YEFLFVLDG---VLTVEVDGERTELTERQSIMFDARKR 151


>gi|319946276|ref|ZP_08020516.1| transcriptional regulator [Streptococcus australis ATCC 700641]
 gi|319747658|gb|EFV99911.1| transcriptional regulator [Streptococcus australis ATCC 700641]
          Length = 158

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  + + H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2  IGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56

Query: 69 ICQ 71
             
Sbjct: 57 YID 59


>gi|312879205|ref|ZP_07739005.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM
           12260]
 gi|310782496|gb|EFQ22894.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM
           12260]
          Length = 134

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 10/132 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I    +   L    LA + G+     ++ +R       R  S + + +  A     +
Sbjct: 5   GSRIREARKARGLEQKELAERMGISAAFLSRIERGE-----RGCSLDLLRRASAVLGCPL 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +L +          +++    LL                 +G   +           + 
Sbjct: 60  AELAEET-----PRPERQALEDLLDLAVREHPEVALYLRHLSGKAGDLTEEERRFLADHL 114

Query: 130 IYAIQTQDTRHK 141
             A+   D   +
Sbjct: 115 KLALGQADEALR 126


>gi|260662801|ref|ZP_05863695.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
 gi|260552882|gb|EEX25881.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 322

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + ++   +    A + G+   S +K +     G    P    I ++      +
Sbjct: 3  LADKITNLRKKEGWSQEEFAERMGVSRQSISKWE-----GGRSTPDMNKILQMSELFGVS 57


>gi|255280652|ref|ZP_05345207.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
 gi|255268589|gb|EET61794.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
          Length = 47

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          +   I ++ + H++T   LA   G+   S +K +R   + +
Sbjct: 5  LAANISKLRKEHSMTQEQLAEALGVTFASVSKWERGVSQTK 45


>gi|225573231|ref|ZP_03781986.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039363|gb|EEG49609.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM
          10507]
          Length = 217

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   +    LA   G++  S +K +R        +P+ E++ KI+     T
Sbjct: 6  LGENIQIIRKHRKMKQQELADAIGINLQSLSKIERGVN-----YPTFETLEKIINVLGVT 60

Query: 69 ICQLLDLPFSDGRT 82
            +LL   +     
Sbjct: 61 PNELLTGEWEQTSH 74


>gi|210623799|ref|ZP_03294059.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM
          13275]
 gi|210153381|gb|EEA84387.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM
          13275]
          Length = 359

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  + +++  +   LA +  +   S +K +          P+ E + +I      +
Sbjct: 5  EKIMNLRKKNGWSQEELAERLDISRQSVSKWESGESV-----PTLEKLIRISEIFEVS 57


>gi|182625365|ref|ZP_02953138.1| putative helix-turn-helix domain protein [Clostridium perfringens
          D str. JGS1721]
 gi|177909362|gb|EDT71814.1| putative helix-turn-helix domain protein [Clostridium perfringens
          D str. JGS1721]
          Length = 224

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E I    E+  ++ S LAR+ G+ P    K +          PS E   KI  A  +
Sbjct: 2  NLNEKITFYREKKGISKSQLAREIGVSPAYITKLENGEKT----NPSLELKVKIANALEQ 57

Query: 68 T 68
           
Sbjct: 58 P 58


>gi|303229830|ref|ZP_07316610.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-134-V-Col7a]
 gi|302515590|gb|EFL57552.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-134-V-Col7a]
          Length = 90

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I E I +     ++T + L+   G+  +  +K +          PS +++ KI  A  
Sbjct: 29 QIIENIVKARIEAHMTQTQLSEVTGITQSDISKIENGNGN-----PSLKTLRKIAHAFG 82


>gi|302382071|ref|YP_003817894.1| XRE family transcriptional regulator [Brevundimonas subvibrioides
          ATCC 15264]
 gi|302192699|gb|ADL00271.1| transcriptional regulator, XRE family [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 69

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          ++   +  +     LT + LA +AG+   + N  +   
Sbjct: 5  RLGSRLKEIRTEAGLTQAELADRAGVSRKTINTVENGV 42


>gi|262194743|ref|YP_003265952.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262078090|gb|ACY14059.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 260

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +    E+  L+ + LA+ AG++ ++ N+          R P TE +  + AA   ++
Sbjct: 15 GDRLVSFLEKRELSQTELAKMAGIERSTLNRLANN-----KREPRTEEVEWLAAALKISV 69

Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92
           +L+     D    E+ E+E  L
Sbjct: 70 DELVAGVEFDSEPPERDEREAEL 92


>gi|255316610|ref|ZP_05358193.1| putative regulatory protein [Clostridium difficile QCD-76w55]
          Length = 116

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I    +R   +   LA+KAGL      + +R   +   R     SIFKI  A    
Sbjct: 10 IGKRIRNYRKRAGYSQEALAKKAGLFHAYLGQIERGESKASLR-----SIFKIANALEMP 64


>gi|169830948|ref|YP_001716930.1| helix-turn-helix domain-containing protein [Candidatus
          Desulforudis audaxviator MP104C]
 gi|169637792|gb|ACA59298.1| helix-turn-helix domain protein [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 123

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +  E + R+  R  L  + +A   G++ ++    +R   +     PS +++ K+     
Sbjct: 2  NRFGETLKRLRHRMGLRQNDVAGMLGVERSTVANWERGVKQ-----PSLDTLIKLSETFG 56

Query: 67 ETICQ 71
           ++ +
Sbjct: 57 VSLDE 61


>gi|209551516|ref|YP_002283433.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209537272|gb|ACI57207.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 125

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EAI ++  R  ++   +A    + P   +  +     G+   P+ + + +
Sbjct: 1  MTPF-----GEAIRKLRARKGVSQKEMAEALNVSPAYLSALE----HGKRGLPTFDLLQR 51

Query: 61 ILAATNETICQ 71
          I    N    +
Sbjct: 52 IAGYFNIIWDE 62


>gi|157369697|ref|YP_001477686.1| XRE family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321461|gb|ABV40558.1| transcriptional regulator, XRE family [Serratia proteamaculans 568]
          Length = 189

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 48/159 (30%), Gaps = 10/159 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS------TESIFKI 61
           ++ + +  + ++   +   LA++ G+   + ++ +R          +        ++ ++
Sbjct: 11  RLAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLCSAYGLTMSRL 70

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L+   +   +LL                   +  P +     F       G        P
Sbjct: 71  LSEVEDEPPELLHREQQTVWVDRASGFHRCSVSPPAALYKAEFIECTLEAGAVIAY-DAP 129

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
            I +  + ++ +  +      +  +       GD L   
Sbjct: 130 SIHALEHHLWLLAGRL-ELTLEGRTFQ--LEPGDCLRYR 165


>gi|329767054|ref|ZP_08258582.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341]
 gi|328837779|gb|EGF87404.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341]
          Length = 181

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + R+  + NLT   L  +  L     ++ +R         PS E+ F IL      
Sbjct: 4   IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLA-----SPSMETFFNILQVLGCA 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                D   +  +     E +           
Sbjct: 59  PKDFFDKESTSQKVYYSLEDQTSYEETDEGYE 90


>gi|291539157|emb|CBL12268.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 184

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S ++I +AI +      +T    A++ G    +  K +   I         + + +I 
Sbjct: 1  MSSSEEIGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEI-----LLKIDVLKQIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
             N    +LL    ++        +     +   S 
Sbjct: 56 NELNVPWQELLFAKDTNTPKDNTTAEYPSYEFHTMSD 92


>gi|254284054|ref|ZP_04959022.1| transcriptional regulator, XRE family [gamma proteobacterium
           NOR51-B]
 gi|219680257|gb|EED36606.1| transcriptional regulator, XRE family [gamma proteobacterium
           NOR51-B]
          Length = 219

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 9/149 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  + +   +T S L++ + L     ++ +R         PS +++  I  A   TI   
Sbjct: 42  IRDLRKARGMTLSELSKISELSQGYLSQVERGISV-----PSIKALHSISRALGVTISWF 96

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRSPHNG 129
                +      +            + + G  D  + P  ++   +     P   S  + 
Sbjct: 97  FQNQVTGEDPAMRAWVVRSGNRRKLTFNTGIVDELLSPNLSRQIEMLKCTFPPGTSSGDV 156

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
            Y  Q ++          L       I++
Sbjct: 157 PYTHQGEEAGIILSGKLNLW-IEDTHIVL 184


>gi|71279451|ref|YP_269397.1| umuD protein [Colwellia psychrerythraea 34H]
 gi|71145191|gb|AAZ25664.1| umuD protein [Colwellia psychrerythraea 34H]
          Length = 137

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 11/108 (10%)

Query: 111 TGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAI 163
                +    P         S    I          +    SM  +    GDILI++ ++
Sbjct: 8   AEAGISGFESPAAEYKELGLSLDQLIIKHPNATFIGQASGQSMKGVGIFDGDILIVDRSL 67

Query: 164 QVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
               GD ++     G  V K++   +     L+S +  +   ++   D
Sbjct: 68  TARNGDVIV-ANYNGCFVCKLIDKVQA---RLLSASADFAPVSITPED 111


>gi|297543548|ref|YP_003675850.1| XRE family transcriptional regulator [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|296841323|gb|ADH59839.1| transcriptional regulator, XRE family [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
          Length = 67

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +  ++ LT   LA+K G+ P   ++ +        R P  E+  KI    N TI  +
Sbjct: 4  LKELRIKYKLTQKELAKKLGVTPDYISQIEGG------RIPGMETAIKIANFFNTTIDDI 57

Query: 73 L 73
           
Sbjct: 58 F 58


>gi|254385485|ref|ZP_05000812.1| transcriptional regulator [Streptomyces sp. Mg1]
 gi|194344357|gb|EDX25323.1| transcriptional regulator [Streptomyces sp. Mg1]
          Length = 192

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 8/133 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I    +R  ++ + LA  +GL     ++ +R         PS  SI++I  A + 
Sbjct: 13  EVGRVIRAWRKRRGISMASLAAGSGLSQPFLSQLERGLAT-----PSLSSIYRIAEALDV 67

Query: 68  TICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           T    L  P   G  +     + I +       +      G       +     P     
Sbjct: 68  TPGTFLRPPDRPGAVSHESDPQVIRVSEAAGQVARVLIPGGRSGLMEAYEHHFEPGR--G 125

Query: 127 HNGIYAIQTQDTR 139
             G +    +D  
Sbjct: 126 ERGWFEHPGEDFL 138


>gi|111656869|ref|ZP_01407706.1| hypothetical protein SpneT_02001881 [Streptococcus pneumoniae
          TIGR4]
 gi|116516030|ref|YP_817335.1| transcriptional regulator, putative [Streptococcus pneumoniae
          D39]
 gi|148989946|ref|ZP_01821229.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP6-BS73]
 gi|148992033|ref|ZP_01821807.1| hypothetical protein CGSSp9BS68_11120 [Streptococcus pneumoniae
          SP9-BS68]
 gi|148998083|ref|ZP_01825596.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP11-BS70]
 gi|149006908|ref|ZP_01830589.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP18-BS74]
 gi|149023820|ref|ZP_01836281.1| aspartyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168484056|ref|ZP_02709008.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00]
 gi|168486222|ref|ZP_02710730.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00]
 gi|168494125|ref|ZP_02718268.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|168575990|ref|ZP_02721895.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|169832746|ref|YP_001695479.1| hypothetical protein SPH_2309 [Streptococcus pneumoniae
          Hungary19A-6]
 gi|183603223|ref|ZP_02713383.2| conserved domain protein [Streptococcus pneumoniae SP195]
 gi|183603587|ref|ZP_02715791.2| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|194398055|ref|YP_002038707.1| hypothetical protein SPG_2056 [Streptococcus pneumoniae G54]
 gi|221232829|ref|YP_002511983.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225855609|ref|YP_002737121.1| hypothetical protein SPJ_2142 [Streptococcus pneumoniae JJA]
 gi|225857692|ref|YP_002739203.1| hypothetical protein SPP_2174 [Streptococcus pneumoniae P1031]
 gi|225859875|ref|YP_002741385.1| hypothetical protein SP70585_2226 [Streptococcus pneumoniae
          70585]
 gi|225861935|ref|YP_002743444.1| hypothetical protein SPT_2128 [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|237650451|ref|ZP_04524703.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CCRI 1974]
 gi|237820955|ref|ZP_04596800.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CCRI 1974M2]
 gi|298229785|ref|ZP_06963466.1| transcriptional regulator, putative [Streptococcus pneumoniae
          str. Canada MDR_19F]
 gi|298254105|ref|ZP_06977691.1| transcriptional regulator, putative [Streptococcus pneumoniae
          str. Canada MDR_19A]
 gi|298501621|ref|YP_003723561.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303254924|ref|ZP_07341008.1| transcriptional regulator [Streptococcus pneumoniae BS455]
 gi|303264524|ref|ZP_07350443.1| hypothetical protein CGSSpBS397_01200 [Streptococcus pneumoniae
          BS397]
 gi|303267196|ref|ZP_07353062.1| hypothetical protein CGSSpBS457_05975 [Streptococcus pneumoniae
          BS457]
 gi|303270043|ref|ZP_07355765.1| hypothetical protein CGSSpBS458_11298 [Streptococcus pneumoniae
          BS458]
 gi|307068736|ref|YP_003877702.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|307128380|ref|YP_003880411.1| hypothetical protein SP670_2261 [Streptococcus pneumoniae 670-6B]
 gi|116076606|gb|ABJ54326.1| transcriptional regulator, putative [Streptococcus pneumoniae
          D39]
 gi|147756093|gb|EDK63136.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP11-BS70]
 gi|147761509|gb|EDK68474.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP18-BS74]
 gi|147924731|gb|EDK75816.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP6-BS73]
 gi|147929082|gb|EDK80093.1| hypothetical protein CGSSp9BS68_11120 [Streptococcus pneumoniae
          SP9-BS68]
 gi|147929616|gb|EDK80609.1| aspartyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168995248|gb|ACA35860.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6]
 gi|172042681|gb|EDT50727.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00]
 gi|183570711|gb|EDT91239.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00]
 gi|183572237|gb|EDT92765.1| conserved domain protein [Streptococcus pneumoniae SP195]
 gi|183574065|gb|EDT94593.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|183575838|gb|EDT96366.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|183578106|gb|EDT98634.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|194357722|gb|ACF56170.1| conserved domain protein [Streptococcus pneumoniae G54]
 gi|220675291|emb|CAR69884.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC
          700669]
 gi|225721839|gb|ACO17693.1| conserved domain protein [Streptococcus pneumoniae 70585]
 gi|225723335|gb|ACO19188.1| conserved domain protein [Streptococcus pneumoniae JJA]
 gi|225726035|gb|ACO21887.1| conserved domain protein [Streptococcus pneumoniae P1031]
 gi|225727179|gb|ACO23030.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237216|gb|ADI68347.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301795045|emb|CBW37510.1| putative DNA-binding protein [Streptococcus pneumoniae INV104]
 gi|301800866|emb|CBW33523.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141]
 gi|301802790|emb|CBW35564.1| putative DNA-binding protein [Streptococcus pneumoniae INV200]
 gi|302598106|gb|EFL65168.1| transcriptional regulator [Streptococcus pneumoniae BS455]
 gi|302640426|gb|EFL70851.1| hypothetical protein CGSSpBS458_11298 [Streptococcus pneumoniae
          BS458]
 gi|302643260|gb|EFL73541.1| hypothetical protein CGSSpBS457_05975 [Streptococcus pneumoniae
          BS457]
 gi|302645894|gb|EFL76122.1| hypothetical protein CGSSpBS397_01200 [Streptococcus pneumoniae
          BS397]
 gi|306410273|gb|ADM85700.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|306485442|gb|ADM92311.1| conserved domain protein [Streptococcus pneumoniae 670-6B]
 gi|327388855|gb|EGE87203.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA04375]
 gi|332071194|gb|EGI81689.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17545]
 gi|332071389|gb|EGI81883.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41301]
 gi|332071555|gb|EGI82048.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17570]
 gi|332198540|gb|EGJ12623.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41317]
 gi|332198731|gb|EGJ12813.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47368]
 gi|332198933|gb|EGJ13014.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47901]
          Length = 68

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 2  QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYT-----PSIIIALKISQIFNE 56

Query: 68 T 68
          T
Sbjct: 57 T 57


>gi|306826280|ref|ZP_07459614.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
          73H25AP]
 gi|304431556|gb|EFM34538.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
          73H25AP]
          Length = 116

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   +  +  R  L  + LA+ AG+   + +  +R     
Sbjct: 50 LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTP 89


>gi|302879146|ref|YP_003847710.1| helix-turn-helix domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302581935|gb|ADL55946.1| helix-turn-helix domain protein [Gallionella capsiferriformans
          ES-2]
          Length = 117

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I    ++ N T + LA + G+D  + ++ +R         PS   + K+  A    + 
Sbjct: 11 ANIAERRKKLNWTQAELAERIGVDTETVSRFERGSN-----LPSLHRLEKLAEALKIPLY 65


>gi|295401476|ref|ZP_06811446.1| transcriptional regulator, XRE family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976526|gb|EFG52134.1| transcriptional regulator, XRE family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 179

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 47/138 (34%), Gaps = 8/138 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I++ I  + ++ +LT   L+ K GL  +  ++ +R          +  S+ KI  A  
Sbjct: 2   EEIYKKIRDLRKQRDLTLKELSEKTGLSISFLSQVERGST-----SLAITSLKKIADALE 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I    +   +        + E    +     S  +   G    G     + V      
Sbjct: 57  VPITDFFENEEN---KNFVVKLENQKPFRIEGSSAEYVRLGGNFNGRSLEPLIVTLEPGF 113

Query: 127 HNGIYAIQTQDTRHKTQD 144
              +++   ++  +  + 
Sbjct: 114 QGDVFSHPGEEFYYILEG 131


>gi|288923632|ref|ZP_06417738.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288345013|gb|EFC79436.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 284

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +   K + + I        ++   LAR+AG+     ++ +R       R PS E + +
Sbjct: 1  MAAIHVKDVGDFIREQRHGAQISLRQLARQAGVSNPYLSQIERG-----LRRPSAEILQQ 55

Query: 61 ILAATNET 68
          I  A   +
Sbjct: 56 IAKALRIS 63


>gi|326317279|ref|YP_004234951.1| XRE family transcriptional regulator [Acidovorax avenae subsp.
          avenae ATCC 19860]
 gi|323374115|gb|ADX46384.1| transcriptional regulator, XRE family [Acidovorax avenae subsp.
          avenae ATCC 19860]
          Length = 469

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + ++     L+   LA+  GL P+  N+ ++       R  +   + KI       + + 
Sbjct: 10 LRKLRAERGLSQIALAQALGLSPSYLNQIEQNQ-----RPLTVSVLLKIHRVLGVDVQEF 64

Query: 73 LDLPF 77
           +   
Sbjct: 65 SEDEE 69


>gi|256026281|ref|ZP_05440146.1| ImpA UV protection protein [Escherichia sp. 4_1_40B]
          Length = 145

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
            +    ++   +        +    SM     + GD+L+++ A +   GD ++ +   G+
Sbjct: 39  EQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEID-GE 97

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
              K L+ R   +++ +S +  +   T+   +I     +
Sbjct: 98  FTVKRLLLRPRLTLEPVSDSPEF--RTLYPENICIFGVV 134


>gi|163846695|ref|YP_001634739.1| helix-turn-helix domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524502|ref|YP_002568973.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl]
 gi|163667984|gb|ABY34350.1| helix-turn-helix domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448381|gb|ACM52647.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl]
          Length = 165

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 30/125 (24%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++ I + I R+      T   LA +  +   + +  +        R  +  +        
Sbjct: 17  NEPIGQRIARLRNELGWTQQELAERLAISRVAVSHIELGLSVPGERTITLLAGLFKREPL 76

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                       ++             L          + + V P      T  + E R 
Sbjct: 77  QLVAGTDYPPARAERLPFVTCRYTEVELQLALLARDCEWIAAVGPIATGRATAILDEWRI 136

Query: 126 PHNGI 130
               +
Sbjct: 137 RLERL 141


>gi|262368260|ref|ZP_06061589.1| SOS-response transcriptional repressor [Acinetobacter johnsonii
           SH046]
 gi|262315938|gb|EEY96976.1| SOS-response transcriptional repressor [Acinetobacter johnsonii
           SH046]
          Length = 204

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 19/182 (10%)

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           S+ +++    +    +  +        E  EK       P S           P G  ++
Sbjct: 12  SLQELMGPEGKPSPTINTVLEQIAVQNELVEKLGLTAVLPKSKVSIPVSLERIPAGPAFS 71

Query: 117 T-VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           T     +    +  +               SML   +   D +I++ +I+    D ++  
Sbjct: 72  TKDEQDKALDLNEFLIHNPISTFIAYVDSESMLDAGFEINDPIIVDRSIEAKHYDIVIAL 131

Query: 175 PRTGDIVAKVL-----------ISRRGRS------IDLMSLNCCYPVDTVEMSDIEWIAR 217
                   K L               G        + L + N  Y       S    I  
Sbjct: 132 IDNSSSTIKRLMITSKMSKSEIKEIFGDEDYPLPDLWLKAENPRYNHIIPNDSQTISIWG 191

Query: 218 IL 219
           ++
Sbjct: 192 VV 193


>gi|257064611|ref|YP_003144283.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792264|gb|ACV22934.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 141

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + E I  +     LT   LA   GL  ++    +        R PS + +  +  +  
Sbjct: 3  VGERIRALRRSAGLTQKELAASIGLTESAVRNYELG-----LRTPSDDQLAAMADSIG 55


>gi|225017731|ref|ZP_03706923.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum
          DSM 5476]
 gi|224949524|gb|EEG30733.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum
          DSM 5476]
          Length = 70

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +  +  RH L  S LA +A +   + +  +R           T  + +IL 
Sbjct: 7  LKELRARHGLNQSELADRADVSRQTISLIERGNYSPSITLALT--LARILE 55


>gi|149202181|ref|ZP_01879154.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035]
 gi|149144279|gb|EDM32310.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035]
          Length = 468

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + ++      T + +ARK  + P+  N  +        R  S + +  I  A    
Sbjct: 6  IGPRLRQLRRERGQTQADMARKLDVSPSYINLLENNQ-----RSLSVQMLMSIADAYAVD 60

Query: 69 ICQ 71
             
Sbjct: 61 WRD 63


>gi|146298229|ref|YP_001192820.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146152647|gb|ABQ03501.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 138

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 1  MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M++ S  K I   I R+ E  ++    LA+  G    + +  +             E + 
Sbjct: 1  MSTLSRPKHIGRNISRIRELRDMKQEALAQALGTSQQTISAIENSETID---DAKLEEVA 57

Query: 60 KILAATN 66
          K L  T 
Sbjct: 58 KALGVTP 64


>gi|50954710|ref|YP_061998.1| transcriptional regulator [Leifsonia xyli subsp. xyli str.
          CTCB07]
 gi|50951192|gb|AAT88893.1| transcriptional regulator [Leifsonia xyli subsp. xyli str.
          CTCB07]
          Length = 184

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          I E + ++      +   LAR+ G+  T  ++ +R   +   R   
Sbjct: 8  IGERLHQLRVERGRSVRALARETGVSATLLSQIERGLSDPSLRTLR 53


>gi|77408842|ref|ZP_00785569.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae COH1]
 gi|77172528|gb|EAO75670.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae COH1]
          Length = 71

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +  R  +  + LA+  G+   + +  +R         PS     KI     E+
Sbjct: 5  LKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYT-----PSVIIAMKISQVFKES 59


>gi|332653067|ref|ZP_08418812.1| transcriptional regulator [Ruminococcaceae bacterium D16]
 gi|332518213|gb|EGJ47816.1| transcriptional regulator [Ruminococcaceae bacterium D16]
          Length = 285

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R   R  L+   LA + G+   + +K +    +          + ++L  + +T
Sbjct: 5  IGEIIQRERTRLGLSQEKLAEQVGVSRQAVSKWELG--DAVPDTDKLVPLARVLEISVDT 62

Query: 69 ICQLLDLPFSDGRTTEKKEK 88
          +         +     +++K
Sbjct: 63 LLDHHPQETEETPKEIEEKK 82


>gi|326319182|ref|YP_004236854.1| peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376018|gb|ADX48287.1| Peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 234

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                               D SM P    GD++ +++        ++ +    G  + +
Sbjct: 132 HEWLERRSLRARDLIAVAVGDDSMQPSLHPGDVVAVDTREPSPADGQVFVVDYEGACLVR 191

Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARIL 219
            ++     +  L + N   +P   +       + R++
Sbjct: 192 RVVRDS-GAWWLAAENALRFPRKQLTAPSARLVGRVV 227


>gi|240141318|ref|YP_002965798.1| putative transcriptional regulator, XRE family [Methylobacterium
           extorquens AM1]
 gi|240011295|gb|ACS42521.1| putative transcriptional regulator, XRE family [Methylobacterium
           extorquens AM1]
          Length = 209

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60
           ++ + I R+ + +NL+ S LA ++G+  +  ++ +R           R       SI + 
Sbjct: 26  QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLTTIWRLSQALDVSIERV 85

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  +  E   +      +    ++  +  + ++ +  +     +       G    +   
Sbjct: 86  LATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADAGGVLESDAH 145

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145
                      ++            
Sbjct: 146 QRGSVE---SLSVLEGSFEVDVAGE 167


>gi|163853865|ref|YP_001641908.1| helix-turn-helix domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665470|gb|ABY32837.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1]
          Length = 209

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60
           ++ + I R+ + +NL+ S LA ++G+  +  ++ +R           R       SI + 
Sbjct: 26  QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  +  E   +      +    ++  +  + ++ +  +     +       G    +   
Sbjct: 86  LATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADAGGVLESDAH 145

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145
                      ++            
Sbjct: 146 QRGSVE---SLSVLEGSFEVDVAGE 167


>gi|223932874|ref|ZP_03624870.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591]
 gi|223898455|gb|EEF64820.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591]
          Length = 168

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/109 (7%), Positives = 29/109 (26%), Gaps = 2/109 (1%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + +   L+   LA   G++  + ++ +      +      +++          +
Sbjct: 1   MNRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIK--SDKAQALADYFEVEVGYL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
               +          K  K+  +            + G    G   + +
Sbjct: 59  LGYNEGHRRMYELFGKHPKKGAMGIIDFDELLEAHELGYIKDGKILDEL 107


>gi|332980702|ref|YP_004462143.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332698380|gb|AEE95321.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 80

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +        LT   LA   G+D T+  K +          PS  +  KI  A +      
Sbjct: 14 LKERRNAKGLTQEQLAALIGVDRTTITKIENGSAR-----PSVNNAKKIAQALDFDWTIF 68

Query: 73 LDLPFSDGRTT 83
           ++  +    T
Sbjct: 69 FNINDNQTSET 79


>gi|299132893|ref|ZP_07026088.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298593030|gb|EFI53230.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 118

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +    +   L+ + LA KAGL P S +  +        R PS +++  +  A + T  
Sbjct: 12  KRLREARDLRGLSQALLAAKAGLPPASVSHFESG-----PRKPSFDNLKALAKALDVTTD 66

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
            LL    +   + E   +    L+   S        
Sbjct: 67  YLLGRSETPDASAETVGRLHRDLHKLSSQDLELAQD 102


>gi|291534827|emb|CBL07939.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis
          M50/1]
          Length = 382

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 11/68 (16%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT        E I     +  L     A K G+ P + +K +          PS E++  
Sbjct: 5  MTM------AENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGLS-----CPSVENLCV 53

Query: 61 ILAATNET 68
          I    + +
Sbjct: 54 ISEILDVS 61


>gi|210634420|ref|ZP_03298108.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279]
 gi|210158823|gb|EEA89794.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279]
          Length = 351

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 40/142 (28%), Gaps = 5/142 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I        +T   +A++ G+   + NK +R             S+ ++      T
Sbjct: 3   ISEIIRSRRRELGMTQEQVAQRLGVSAPAVNKWERGIC--YPDITLIPSLARLFETDANT 60

Query: 69  --ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +             + ++ +    +            ++PT +    + + +    
Sbjct: 61  LLSFEPELREEESLAIQREVDRLVREEGYEAGFDYAQEKMRLYPTSD-ELAIVLTQYLDG 119

Query: 127 HNGIYAIQTQDTRHKTQDTSML 148
              +  I   +      D +  
Sbjct: 120 SLVLRQIPGAEGYRPVLDDAYA 141


>gi|332655408|ref|ZP_08421147.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
 gi|332515703|gb|EGJ45314.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
          Length = 166

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + I  + +   LT   LA++ G+   +    +        R P+++++  +      +
Sbjct: 2  GQRIQELRKDAGLTQEQLAQRIGVSMAAVRNYENG-----LREPNSKAMAALERFFKVS 55


>gi|323693418|ref|ZP_08107631.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum
           WAL-14673]
 gi|323502526|gb|EGB18375.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum
           WAL-14673]
          Length = 180

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 53/174 (30%), Gaps = 9/174 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I R+ E + L+   L+R +G+  +   + +R         P+  +++KI       
Sbjct: 5   VAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGN-----PTISTLWKISNGMKVP 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L   P +  +  +  E +  L       +   F          +  + + E     +
Sbjct: 60  FDALTVRPENLYQIVKTSEIQPLLEDNGKVRNYPVFPDDENRRFAVY-YLELEEGSFWES 118

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIV 181
             +     +     +    +  Y      I+     +    D +      GD  
Sbjct: 119 EPHLKGAAEFITVFKGQVEI--YADSQPFIVGQGESIRFRADTVHSYKNAGDGT 170


>gi|319744195|gb|EFV96562.1| XRE family transcriptional regulator [Streptococcus agalactiae
          ATCC 13813]
          Length = 129

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + ++ +LT   +A K G+   ++   +R       + P+ E+  K+    N T+ 
Sbjct: 17 ERLKTLRKQAHLTQKEIAEKLGISQPAYGDWERGV-----KMPTHENSKKLARLFNITLD 71

Query: 71 QLLDLPF 77
           L+    
Sbjct: 72 TLMGNQE 78


>gi|307710471|ref|ZP_07646908.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307618734|gb|EFN97873.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 158

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 38/146 (26%), Gaps = 6/146 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  + + H+LT    A+  G+   S ++ +           STE + +I    N +
Sbjct: 2   IGENIKTLRKTHDLTQPEFAKIIGISRNSLSRYENGIS-----SVSTELVDRICKKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               +          E  +  + +      G+        F                  +
Sbjct: 57  YLD-IVGEEKMLTPVEDYQLTLKIELIKERGANILAQLYRFQDEQGIEFDDSANPWVLMS 115

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKG 154
              +       +       +  Y   
Sbjct: 116 DDLSDLINTKIYLVATFDEVERYNGY 141


>gi|223984183|ref|ZP_03634332.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM
          12042]
 gi|223963841|gb|EEF68204.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM
          12042]
          Length = 321

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K + E I  + +  N+T    A   G+   + +  +R   E     P   ++ KI     
Sbjct: 2  KTLGEKIAGLRQEKNMTQQAFADVMGVTRQAISNWERNKTE-----PDVAALKKIGQIFG 56

Query: 67 ETICQ 71
            +  
Sbjct: 57 VDMND 61


>gi|205375274|ref|ZP_03228064.1| post-exponential-phase response transcriptional regulator
          [Bacillus coahuilensis m4-4]
          Length = 107

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + ++    N++ + LA +AG+  +  +  +R       + PS + + K+  A   +
Sbjct: 2  IGERVKQLRLEKNMSMTELAERAGVAKSYLSAIERNL----QKNPSVQFLEKVAQALGVS 57

Query: 69 ICQLLDLPFSDGRTTEKKE 87
          +  +L     D +  +   
Sbjct: 58 MDSILFNQQEDKQAVDPDW 76


>gi|195940391|ref|ZP_03085773.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str.
           EC4024]
          Length = 175

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 44/154 (28%), Gaps = 13/154 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    H  +   +  + +    + S LA + G+      + +R         P+  +++K
Sbjct: 1   MDITQH--LATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNES-----SPTVSTLWK 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I    N      +          + +++ + +  L+           S     G    + 
Sbjct: 54  IATGLNVPFSAFITPESDPQAVFDPQQQAMVVKPLFPWDDQLKFDHFSITLSPGALSEST 113

Query: 119 GVPEIRSPH----NGIYAIQTQDTRHKTQDTSML 148
                   H    +G+  +Q        Q  S  
Sbjct: 114 PHESGVIEHVVVISGVLDMQIDGIWRTIQADSGA 147


>gi|182414116|ref|YP_001819182.1| LexA family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841330|gb|ACB75582.1| transcriptional repressor, LexA family [Opitutus terrae PB90-1]
          Length = 199

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 56/219 (25%), Gaps = 37/219 (16%)

Query: 1   MTSFSHKKIWEAIDRM--AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT  + +K+ + I       +  +T   +    G   +          +   R      +
Sbjct: 4   MTE-TQRKVLDFIRARVRRSQRGVTFREVQAAFGWRSS-------NAAQDHVRALREAGL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +                     +  +  + I  +                P        
Sbjct: 56  LR---------------------SDLRGARSILPVTIHDGIPIFGTIPAGIPIDAASENG 94

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
              ++  P              + +  SM+    + GD +++ +A     GD ++     
Sbjct: 95  EFLDV-EPSLFDSKPGIPVFALRVRGHSMVNAGIKDGD-VVVLAARDPRKGD-VVAALVD 151

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
            +   K     RGR+  L +    +    +   ++    
Sbjct: 152 KESTLKRYCVERGRAY-LKAEGPGFDDI-LPAEELIIQG 188


>gi|91202186|emb|CAJ75246.1| conserved hypothetical protein [Candidatus Kuenenia
          stuttgartiensis]
          Length = 121

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I  + E+   T S  A+  G+  ++ ++ +    + 
Sbjct: 6  IKELREKLGATQSEFAKALGISFSTVSRWESGISQP 41


>gi|302387526|ref|YP_003823348.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302198154|gb|ADL05725.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 195

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + K+   I  +   H++T   LA K  L   + +K +R    G         + +IL 
Sbjct: 1  MQNNKVGSIIRALRLEHSMTQKQLADKMNLSDKTVSKWERGM--GLPDISLIPELSRILE 58

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
               +      P +      K  K     
Sbjct: 59 IDIMHLLSGDMTPNNFTGGNMKNTKYFVCP 88


>gi|296156060|ref|ZP_06838899.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295893566|gb|EFG73345.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 190

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 44/161 (27%), Gaps = 20/161 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +  +    N +   LAR + +   + ++ +   +      P+   + K+  A   
Sbjct: 14  RIAQRLRALRAERNWSLDDLARLSSVSRATLSRLENAAV-----SPTASVLGKLCVAYGL 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-----------GFFDSGVFPTGNKWN 116
            I +L+ +   D      +  +                       G         G +  
Sbjct: 69  PISRLMHMVEEDFAPHVPRAAQPLWTDASVGFRRRSVSPPAQALSGEALECELDAGVRIT 128

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
               P     H+    +     +      S     + GD L
Sbjct: 129 YDASPRPGLEHH--LILLEGQLQITVDGQS--HNLQPGDCL 165


>gi|187777952|ref|ZP_02994425.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC
           15579]
 gi|187774880|gb|EDU38682.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC
           15579]
          Length = 384

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 16/215 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +     I   I    +   +T   LA   G+   S +K +         +P    + +
Sbjct: 1   MINLRGLNIGNCIVHKRKEKGITQEQLADYIGVSKASVSKWESGLS-----YPDILLLPE 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    N ++ +LL       +   KK        F         +         ++    
Sbjct: 56  IATYFNISVDELLGYSPQLTKEDIKKIYSKLSHEFAVRPFDEVMEQCNKLIKKYYSCFPF 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                     Y+          +D ++     +  IL+     + +     +    T + 
Sbjct: 116 LLSIIQLLLNYSS-------LIKDDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 168

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           ++++ +      I L+  N   P       D+  I
Sbjct: 169 LSEMTLGNSEEVIRLL-DNKLDP---YRGDDVILI 199


>gi|154496299|ref|ZP_02034995.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC
           29799]
 gi|150274382|gb|EDN01459.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC
           29799]
          Length = 155

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + +  E   LT   +A K  L  T+ +  +    E     PS E++ ++      +
Sbjct: 53  VSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSE-----PSMETLVQLANLYGVS 107

Query: 69  ICQLLDLPFSDGRTTEKKEK 88
           +  L+    +     E++ K
Sbjct: 108 LDYLMCRTDTRIEFNEEEYK 127


>gi|41406396|ref|NP_959232.1| hypothetical protein MAP0298 [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41394745|gb|AAS02615.1| hypothetical protein MAP_0298 [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 502

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             + R+ E   LT   LAR  GL  +  N+ +     
Sbjct: 35 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRP 72


>gi|313889218|ref|ZP_07822872.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312844772|gb|EFR32179.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 179

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 7/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  M     LT   LA ++ L     ++ +R         PS +S+  IL A   
Sbjct: 2   NIGNKIREMRIEKGLTQEELADRSELTKGFISQIERDLT-----SPSVDSLLDILEALGT 56

Query: 68  TICQLLDLPFSDGRTTEKK-EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                     ++     ++   E               ++           +  P  RS 
Sbjct: 57  DPGLFFKREENEKIIFNEEDFFESENEELSYVLDWVVPNAQKNQMEPMRILI-KPGGRSK 115

Query: 127 HNGIYAIQTQDTRHKTQ 143
               Y  +      +  
Sbjct: 116 EVQPYEGEEFGFVLRGS 132


>gi|296451585|ref|ZP_06893320.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296259650|gb|EFH06510.1| DNA-binding protein [Clostridium difficile NAP08]
          Length = 44

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
            KI + I  + +  NLT   LA+  G+   + +K +  G 
Sbjct: 2  QIKIGKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGGS 42


>gi|270291758|ref|ZP_06197974.1| putative transcriptional regulator [Streptococcus sp. M143]
 gi|270279843|gb|EFA25684.1| putative transcriptional regulator [Streptococcus sp. M143]
          Length = 68

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 17/43 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          ++   +  +  R  L  + LA+ AG+   + +  +R       
Sbjct: 2  QLKNRLKELRARDGLNQTDLAKLAGVSRQTISLLERDEYTPSI 44


>gi|218532810|ref|YP_002423626.1| XRE family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|254563828|ref|YP_003070923.1| XRE family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|218525113|gb|ACK85698.1| transcriptional regulator, XRE family [Methylobacterium
           chloromethanicum CM4]
 gi|254271106|emb|CAX27113.1| putative transcriptional regulator, XRE family [Methylobacterium
           extorquens DM4]
          Length = 209

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60
           ++ + I R+ + +NL+ S LA ++G+  +  ++ +R           R       SI + 
Sbjct: 26  QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  +  E   +      +    ++  +  + ++ +  +     +       G    +   
Sbjct: 86  LATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADAGGVLESDAH 145

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145
                      ++            
Sbjct: 146 QRGSVE---SLSVLEGSFEVDVAGE 167


>gi|118444284|ref|YP_879117.1| LacI/xre family transcriptional regulator [Clostridium novyi NT]
 gi|118134740|gb|ABK61784.1| Predicted transcriptional regulator, lacI/xre family [Clostridium
           novyi NT]
          Length = 221

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 11/214 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL----- 62
           ++   I     + N+T   LA+K G+      + +    +        E I K+L     
Sbjct: 3   RVGSKIRDARLKANMTEKQLAKKIGVAEKFIKEVESG--KKVINESVMEKISKVLGKDLN 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T     ++ +      +   K E+   +                +          +P 
Sbjct: 61  DVTMSFEAEVYEEEKVQTKKNTKLERVNDVWDDALGSVLKPVPVYGYDMARIIEMRKLPI 120

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           I +   G    + +    K +D  M+     KGDI       ++      L++    +  
Sbjct: 121 INNKVEGH--AKDKVLYLKVEDDDMIGSRIAKGDIAFGYITHEIINNSLCLVEYN-DERH 177

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
            + +       + L+S       +TV   DI  +
Sbjct: 178 IRQIKRLDSNKLLLISNGNSLRTETVTAKDINVL 211


>gi|16799151|ref|NP_469419.1| hypothetical protein lin0073 [Listeria innocua Clip11262]
 gi|16412493|emb|CAC95306.1| lin0073 [Listeria innocua Clip11262]
          Length = 158

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/144 (8%), Positives = 34/144 (23%), Gaps = 12/144 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + ++   +   LA + G         ++       R P  +++ KI    N +  
Sbjct: 4   KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGT-----REPDYQTLLKIAEFFNVST- 57

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
             L     +                        +             + + +I +  +  
Sbjct: 58  DYLLGRDDNNLADTIAAHIDSNASEEDMKEILAYIEEKRKEHANEEEIDITDIAAKKDAD 117

Query: 131 YAI------QTQDTRHKTQDTSML 148
            A         +    +  D    
Sbjct: 118 VAKFVEENPDFKAVAARVMDDEEA 141


>gi|323485634|ref|ZP_08090973.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
 gi|323401045|gb|EGA93404.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
          Length = 289

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 44/164 (26%), Gaps = 16/164 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  + ++ NLT    A +  +   + +K +         +P  E + +I      ++ 
Sbjct: 5   ENLQYLRKKQNLTQEQFAEQMEVSRQAVSKWESGQS-----YPEMEKLLQICEQFGCSMD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPL----LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            L+    ++    +       +    +    + +   F   +  + +   +  V  I   
Sbjct: 60  SLIKGDVTEAAKEDSTGYNRHMNRYSIMVSSAVALIIFSVAIIASLDGIVSEAVTSIILF 119

Query: 127 HNGIYAIQTQDTRHKTQDTS---MLPLYRKGDILILNSAIQVNC 167
                A+            S       Y   D            
Sbjct: 120 VLIGIAV----YILIIAGISHQYYRRRYPDIDNFYTEEQHANFN 159


>gi|220908355|ref|YP_002483666.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219864966|gb|ACL45305.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
          Length = 224

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + +R + + + LAR  G+   + N  +    +     PS E  FKI    N  I 
Sbjct: 3  NRLKELRQRRSWSQADLARSLGISRQAVNGFESGKFD-----PSLEMAFKIARLFNVAIE 57

Query: 71 QLLDLPFSDGRTT 83
           +          T
Sbjct: 58 DVFVYEARHSMPT 70


>gi|149921945|ref|ZP_01910388.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149817207|gb|EDM76685.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 108

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             +  + E   LT + LAR AG+   + ++ +          PS +++ KI    
Sbjct: 7  GARVRLLREGRGLTQARLARMAGVASDTISRVESARF-----SPSLDTMIKIADGL 57


>gi|83589109|ref|YP_429118.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572023|gb|ABC18575.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 81

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          A+ R+  +  LT S LAR  GL   S+   ++         PS  +  +I  A N  + +
Sbjct: 4  ALRRVRLQAGLTQSELARLVGLTRASYTNIEKGHKN-----PSVGTALRIARALNRPVEE 58

Query: 72 LLDLPFSDGRTTEKKEKEIP 91
          L        +  + + + + 
Sbjct: 59 LFADESPAVQDVKSEGRAMR 78


>gi|24379134|ref|NP_721089.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gi|290580856|ref|YP_003485248.1| putative transcriptional regulator [Streptococcus mutans NN2025]
 gi|24377038|gb|AAN58395.1|AE014909_11 putative transcriptional regulator [Streptococcus mutans UA159]
 gi|254997755|dbj|BAH88356.1| putative transcriptional regulator [Streptococcus mutans NN2025]
          Length = 81

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    +      +  +  R  +  + LA+ AG+   + +  +R         PS    FK
Sbjct: 1  MPILKN-----RLKELRARDGINQTQLAKLAGISRQTVSLIERNEYT-----PSVVIAFK 50

Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86
          I  +  E +  +  L   +    ++ 
Sbjct: 51 IAKSFGEPVENVFSLMEEENEKVKRS 76


>gi|220931592|ref|YP_002508500.1| helix-turn-helix domain protein [Halothermothrix orenii H 168]
 gi|219992902|gb|ACL69505.1| helix-turn-helix domain protein [Halothermothrix orenii H 168]
          Length = 301

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + +   L    LA   G+  T+    ++       R+P+ + + K+    N +I 
Sbjct: 6  SRLRSLRKEKKLRQKDLAGALGVAQTTIANYEQN-----LRFPNQDILNKLADYFNVSID 60

Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92
           LL        T     K   +
Sbjct: 61 YLLGRSCLRQPTNFTSFKNNHI 82


>gi|311069952|ref|YP_003974875.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|310870469|gb|ADP33944.1| transcriptional regulator [Bacillus atrophaeus 1942]
          Length = 151

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    +R   + + LA +AG+  +  +K +R         PS + + K+       
Sbjct: 2   IGRIIRLYRKRKGYSINQLAVEAGVSKSYLSKIERGVHT----NPSIQFLKKVSETLEVE 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           + +L D      + T  +E+   LL         
Sbjct: 58  LTELFDAETILHQKTGGEEEWRLLLVQAVQAGME 91


>gi|315500763|ref|YP_004089564.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
 gi|315418775|gb|ADU15413.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
          Length = 68

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E + R+ +   LT   L  ++GL     +  +R       R P+  ++++I  A    
Sbjct: 2  VGENLKRLRQEKGLTQEVLESRSGLSQQYLSGLERG-----KRNPTIITVYEISQALGVH 56

Query: 69 ICQ 71
            +
Sbjct: 57 YLE 59


>gi|291302743|ref|YP_003514021.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290571963|gb|ADD44928.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 194

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 13/150 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  + N+T + LA   G+  ++ ++ +        R P+ E +  +       
Sbjct: 14  VGPRLRELRRQRNVTLARLAEATGISESTLSRLESGA-----RRPNLELLLPLAKVYGVP 68

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+  P +       +      + F P                      +P   S   
Sbjct: 69  LDELVGAPTTGDPRVHLRPVHRGGMTFIPLTRRAGGIQSYKMV--------IPGDTSGRE 120

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
                          +  +  L    D+++
Sbjct: 121 PDLKTHEGYEWMYVLNGRLRLLLGDKDLVL 150


>gi|228926912|ref|ZP_04089978.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228936979|ref|ZP_04099721.1| Transcriptional regulator [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228822694|gb|EEM68584.1| Transcriptional regulator [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832647|gb|EEM78218.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 118

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I E I  + +   L    L +  G+   + +K ++         PS E+I K+    
Sbjct: 4  IGERIFELRKEKKLVQEELGKYIGVSKQTISKYEKGTKI-----PSRENIEKLADFF 55


>gi|228960178|ref|ZP_04121835.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228799446|gb|EEM46406.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 118

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  + +   LT   +    G+   + +K ++         PS E+I K+    N  
Sbjct: 4  IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKI-----PSRENIEKLADFFNVP 58

Query: 69 ICQLLDLPFSDGRTTEK 85
          I  L     +  +++  
Sbjct: 59 IDYLFGKSDNSIKSSNN 75


>gi|228966936|ref|ZP_04127974.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228792670|gb|EEM40234.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 118

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  + +   LT   +    G+   + +K ++         PS E+I K+    N  
Sbjct: 4  IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKI-----PSRENIEKLADFFNVP 58

Query: 69 ICQLLDLPFSDGRTTEK 85
          I  L     +  +++  
Sbjct: 59 IDYLFGKSDNSIKSSNN 75


>gi|154687569|ref|YP_001422730.1| Slr [Bacillus amyloliquefaciens FZB42]
 gi|308175181|ref|YP_003921886.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens
           DSM 7]
 gi|154353420|gb|ABS75499.1| Slr [Bacillus amyloliquefaciens FZB42]
 gi|307608045|emb|CBI44416.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555152|gb|AEB25644.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens
           TA208]
 gi|328913510|gb|AEB65106.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens
           LL3]
          Length = 151

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I     R   + + LA +AG+  +  +K +R         PS + + K+ A     
Sbjct: 2   IGRIIRLYRRRKGYSINQLAVEAGVSKSYLSKIERGVHS----NPSIQFLKKVSATLQVD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           + +L D         + +++    ++   +   G     +F
Sbjct: 58  LTELFDAETMLHHMGDTEDEWR--IHLVQAVQSGMPKEELF 96


>gi|148263396|ref|YP_001230102.1| XRE family transcriptional regulator [Geobacter uraniireducens
          Rf4]
 gi|146396896|gb|ABQ25529.1| transcriptional regulator, XRE family [Geobacter uraniireducens
          Rf4]
          Length = 174

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKA--GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   + R+    +LT   LA +   GLD T   K +R       + PS + + KI  A 
Sbjct: 30 EIGSRLKRLRMERSLTQKELAVRVSGGLDYTYIGKIERGE-----QLPSLKILLKISEAL 84


>gi|320189654|gb|EFW64311.1| putative repressor protein [Escherichia coli O157:H7 str. EC1212]
 gi|326338881|gb|EGD62698.1| putative repressor protein [Escherichia coli O157:H7 str. 1125]
 gi|326340087|gb|EGD63892.1| putative repressor protein [Escherichia coli O157:H7 str. 1044]
          Length = 113

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 11/98 (11%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDT-----SMLPLYRKGDILILNSAIQVNCGDRLLIK--- 174
                   + ++  D      D      S  P    G  +IL        G  + +    
Sbjct: 3   NVDRITTFFDVEEGDFAVSMPDDTMHNPSGSPSIPVGATVILRPGESYKNGSIVAVIVPD 62

Query: 175 --PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS 210
                  +  K L+   G+ + L  LN  Y    +   
Sbjct: 63  PLKNEPSMTIKKLV-IDGKLVYLSPLNPRYQSSLLTPE 99


>gi|75761153|ref|ZP_00741144.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228904571|ref|ZP_04068647.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|74491352|gb|EAO54577.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228855052|gb|EEM99635.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
          Length = 194

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            + I + I  + +   ++   L    G+   + ++ +        R  S E +  I  A 
Sbjct: 2   QENIGKVIKEIRKAKGISAFVLGEMIGVSQQAISQYENG-----KRKISFEVLNNIAKAL 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           N  +  LL +          +     L   P   +
Sbjct: 57  NVPMDTLLFVNHEAIEQKIAERGVEALEKEPSLFN 91


>gi|328885857|emb|CCA59096.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          venezuelae ATCC 10712]
          Length = 509

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I + I    +    T + LA       ++ N+ +R          S E I +I  A 
Sbjct: 8  RIGKLIRDARQHRGWTQTQLADALATSQSAVNRIERGNQN-----ISLEMIARIGEAL 60


>gi|310826136|ref|YP_003958493.1| hypothetical protein ELI_0514 [Eubacterium limosum KIST612]
 gi|308737870|gb|ADO35530.1| hypothetical protein ELI_0514 [Eubacterium limosum KIST612]
          Length = 220

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 22/173 (12%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T F+ K++ E I        L+   L ++  ++ ++  + +  G++ + R      + + 
Sbjct: 5   TMFTPKQVGERIKERRIELKLSMPELGKRISVNKSTIQRYEADGVDPK-RTMIINGLAEA 63

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--------------------- 100
           L  T E +  L +    D +T  +++ E  +  +  S S                     
Sbjct: 64  LLTTPEWLTGLSEEKEYDAKTLCQRDIEAHIAKYLDSVSVVQGEPHQQLLTTFLGKMIDL 123

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
                        + + V   E        YAI++     K     M      
Sbjct: 124 YSVLCYHFADAMAEVDRVAADEGLKESLMRYAIESGAITEKVYRNEMEAPIED 176


>gi|302380010|ref|ZP_07268489.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
 gi|302312236|gb|EFK94238.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
          Length = 174

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  + +++ L+   LA +  +   + +K +R         P ++S+ K+    + +
Sbjct: 4  ENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSV-----PDSDSLIKLSEILHTS 56


>gi|260439179|ref|ZP_05792995.1| toxin-antitoxin system, antitoxin component, Xre family
           [Butyrivibrio crossotus DSM 2876]
 gi|292808378|gb|EFF67583.1| toxin-antitoxin system, antitoxin component, Xre family
           [Butyrivibrio crossotus DSM 2876]
          Length = 140

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 30/127 (23%), Gaps = 6/127 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I  +  +  LT   LA   G+   +    +      + R    E+  K+    +  I
Sbjct: 4   GERIRELRTQKGLTQPQLADSIGVSVRTVKSYELGTSLPKTR----ETYQKLAEFFDVNI 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LL                               +      G       + E+      
Sbjct: 60  NYLLAKDEQFILDAGATYGSRG--KHKQQAHALIAEVSGLFAGGGIAEEDMDEMMKAIQD 117

Query: 130 IYAIQTQ 136
            Y I  +
Sbjct: 118 AYWIAKE 124


>gi|158340467|ref|YP_001521461.1| helix-turn-helix domain-containing protein [Acaryochloris marina
          MBIC11017]
 gi|158310708|gb|ABW32322.1| helix-turn-helix domain protein [Acaryochloris marina MBIC11017]
          Length = 81

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          M  +  LT   +A   G+   S +  +R            +++ KIL  T
Sbjct: 22 MRRKQGLTQDDIAEALGISGQSVSNWERGRSIPTLTIDQVKTLCKILDCT 71


>gi|55820955|ref|YP_139397.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55822875|ref|YP_141316.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736940|gb|AAV60582.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55738860|gb|AAV62501.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
          Length = 111

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            SHK     I ++ E  NLT   LA + G    S  + +          P+ +++ +I 
Sbjct: 46 KLSHK-----IKQLRENINLTQQELADRMGKSQASIGRIENGTTN-----PTYKTLEEIA 95

Query: 63 AATN 66
          AATN
Sbjct: 96 AATN 99


>gi|332141631|ref|YP_004427369.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|332143443|ref|YP_004429181.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|327551653|gb|AEA98371.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|327553465|gb|AEB00184.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
          Length = 106

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++I E++     R   +   L+ ++G+  +  +K +  G++   R  S  ++ ++L 
Sbjct: 6  EQILESLREARVRKGFSQRELSARSGVPQSHISKIESGGVD--LRISSLIALARVLD 60


>gi|330718084|ref|ZP_08312684.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC
          3537]
          Length = 67

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + +    +   LA+ AG+   + N  +    +     PS E  FK+ +     + 
Sbjct: 3  NNIKTLRKAQKFSQDELAQAAGVTRQTINAIENDKYD-----PSLELAFKLASILLVRVD 57

Query: 71 QLLDLP 76
          +L    
Sbjct: 58 ELFLWH 63


>gi|222084519|ref|YP_002543048.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221721967|gb|ACM25123.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 189

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 5/115 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I ++     +T   LA  + +     ++ +R         P+   + ++ AA   +
Sbjct: 9   IGARIKQLRIARGMTLDELANASAVSRAMISRIERAEA-----SPTASLLARLCAALGLS 63

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           +         D     + + +                     +      V  P  
Sbjct: 64  LSSFFAEEEEDVSPLARSDAQPIWRDPETGYVRRAVSPAGTQSPVDLVEVTFPAG 118


>gi|170696997|ref|ZP_02888093.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|170138171|gb|EDT06403.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
          Length = 95

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +A+        L+ + +A + G    +  + +R    GR   PS +++ K  AA  
Sbjct: 31 LLDAMLAARRAAGLSQADVAERMGTKAPAVTRLERALATGR-HSPSIDTLRKYAAACG 87


>gi|172062317|ref|YP_001809968.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171994834|gb|ACB65752.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 95

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +A+        L+ + +A + G    +  + +R    GR   PS +++ K  AA  
Sbjct: 31 LLDAMLAARRAAGLSQADVAERMGTKAPAVTRLERALATGR-HSPSIDTLRKYAAACG 87


>gi|23465550|ref|NP_696153.1| hypothetical protein BL0981 [Bifidobacterium longum NCC2705]
 gi|239621901|ref|ZP_04664932.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|23326214|gb|AAN24789.1| hypothetical protein with helix turn helix motif [Bifidobacterium
           longum NCC2705]
 gi|239515092|gb|EEQ54959.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291517097|emb|CBK70713.1| Predicted transcriptional regulators [Bifidobacterium longum subsp.
           longum F8]
          Length = 277

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES------IFKIL 62
           I + I  + E   LT S  A +  +   + ++ ++   E         S      + +++
Sbjct: 119 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMARLM 178

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
              +   CQ   +PF        +        +             +   +
Sbjct: 179 EMPDNGFCQSCAMPFYRPEDHGTEPDGTRNGDYCNYCYEDGVFLQAYANSD 229


>gi|17229162|ref|NP_485710.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75907407|ref|YP_321703.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
          29413]
 gi|17135490|dbj|BAB78036.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75701132|gb|ABA20808.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
          29413]
          Length = 115

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + E+  LT   L+R  G+  ++    +     GR      E I +   A N  +  
Sbjct: 8  RIALLREKAGLTQLELSRLVGVTESTIQNWE----SGRTGTDHIERIIRFCKALNCQVED 63

Query: 72 LLDLPFSDGRTTEKKEKEIPLLYF 95
          L++       T+  K   +  ++ 
Sbjct: 64 LIEYKDETTETSVNKPTSLSDIHH 87


>gi|150018568|ref|YP_001310822.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149905033|gb|ABR35866.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 359

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I ++ +   LT   LA   G+   + +K +          P    +  +  A N 
Sbjct: 5  NIGETILKLRKERKLTQEELALMIGISAGAVSKWENGNS-----MPDISILAPLARALNT 59

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          +I  LL              K 
Sbjct: 60 SIDTLLSFHKELSEEEVNNIKS 81


>gi|332157761|ref|YP_004423040.1| Predicted transcription regulator, containing DNA-binding HTH
          domain protein [Pyrococcus sp. NA2]
 gi|331033224|gb|AEC51036.1| Predicted transcription regulator, containing DNA-binding HTH
          domain protein [Pyrococcus sp. NA2]
          Length = 66

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E + LT   LA+K G+   +    ++   +     PS    FKI       I 
Sbjct: 3  NRLRELREMYGLTQEELAKKLGVTRQTIIAIEKGKYD-----PSLRLAFKIAKFFGVKIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DIFIYDD 64


>gi|307707790|ref|ZP_07644268.1| conserved domain protein [Streptococcus mitis NCTC 12261]
 gi|307616172|gb|EFN95367.1| conserved domain protein [Streptococcus mitis NCTC 12261]
          Length = 68

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R     + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 2  QLKNRLKELRARDGFNQTELAKLAGVSRQTISLLERDEYT-----PSIIIALKISQIFNE 56

Query: 68 T 68
          T
Sbjct: 57 T 57


>gi|284009381|emb|CBA76570.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 137

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K I E I    +   LT   L ++ G+   + ++ ++   E     P  +++  
Sbjct: 1  MEM---KSIGERIRLRRKELELTQKQLGKRVGVSHVAISQWEKEETE-----PKGDNLLS 52

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
          +  A   T   +L    S+       +    
Sbjct: 53 LADALMCTAEYILRGTTSEKPIRCDNDTYKY 83


>gi|254294734|ref|YP_003060757.1| XRE family transcriptional regulator [Hirschia baltica ATCC
          49814]
 gi|254043265|gb|ACT60060.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
          Length = 70

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + +   LT   LA   G+   +    ++         PS E+ F+I     +++  +
Sbjct: 11 IQELRKAKKLTQQELADAIGMTRQTIVAIEKGKY-----SPSLEAAFRIAQTLEQSLTDV 65

Query: 73 LDLPF 77
               
Sbjct: 66 FVWSE 70


>gi|227832086|ref|YP_002833793.1| putative transcriptional regulator, MerR family [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184059|ref|ZP_06043480.1| putative transcriptional regulator, MerR family protein
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227453102|gb|ACP31855.1| putative transcriptional regulator, MerR family [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 468

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++    +L+ + LA   GL  +  N+ +        R  +   + KI  A    
Sbjct: 6   VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLKITEAFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S      +   +   +   P       +            V +        
Sbjct: 61  ATFFSRDDDSRLLAEIQDVVQDQEICPSPVELQELSELVYNHPTVARTLVDIHRRYRNIR 120

Query: 129 GIYAIQTQD 137
              ++ T  
Sbjct: 121 DKLSLATDT 129


>gi|168211008|ref|ZP_02636633.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|170710935|gb|EDT23117.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
          Length = 330

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 67/219 (30%), Gaps = 11/219 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           ++++ E++N +   L          FN+ KR      N       + K    T +   ++
Sbjct: 92  LNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDIKLFRELSKEFTNTLDKEHEI 151

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNG 129
                 + +             F  S       +  F   +    V            + 
Sbjct: 152 NLSDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISK 211

Query: 130 IYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVL 185
             A+ +        + +  SM  L++  +++I         GD ++       +      
Sbjct: 212 SIALPSNYKDCFALRVKGNSMNKLFKNNELIICCRNKTPIDGDIVIAYLSENNEATC-KK 270

Query: 186 ISRRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222
           I ++   ++L   +   Y +   +  SDI  I  ++  S
Sbjct: 271 IHKKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 308



 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I    +++ L+ + LA K G+  T+    +R  +E          + K++  + +++  
Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYT--LVQLSKLMNRSIDSLLG 69

Query: 72 LLDLPFSDGRTTEKKEKEIPLL 93
          L     +          +   +
Sbjct: 70 LNHSTENTNDLNNSDLSKKIFI 91


>gi|12746568|gb|AAK07492.1| hypothetical protein [IncJ plasmid R391]
 gi|20095202|gb|AAM08068.1| hypothetical protein [Providencia rettgeri]
 gi|262318118|dbj|BAI48444.1| hypothetical protein [Proteus mirabilis]
          Length = 106

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++I E++     R   +   L+ ++G+  +  +K +   ++   R  S  ++ ++L 
Sbjct: 6  EQILESLREARVRKGFSQRELSARSGVPQSHISKIESGSVD--LRISSLIALARVLD 60


>gi|27467714|ref|NP_764351.1| hypothetical protein SE0796 [Staphylococcus epidermidis ATCC 12228]
 gi|57866618|ref|YP_188269.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis
           RP62A]
 gi|251810551|ref|ZP_04825024.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366914|ref|ZP_06613589.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315258|gb|AAO04393.1|AE016746_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637276|gb|AAW54064.1| transcriptional regulator, Cro/CI family [Staphylococcus
           epidermidis RP62A]
 gi|251805962|gb|EES58619.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|291318889|gb|EFE59260.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329732828|gb|EGG69174.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
           VCU144]
 gi|329734233|gb|EGG70549.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
           VCU028]
 gi|329735546|gb|EGG71834.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
           VCU045]
          Length = 179

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 58/197 (29%), Gaps = 35/197 (17%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +    NLT   LA +  L     ++ +          PS E+   ++     
Sbjct: 2   DIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHA-----SPSMETFLNLIEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126
           +       P  +    +KKE+ I   Y       G+  + +    N+++   +     P 
Sbjct: 57  SASDFFKEPSDEKVLYKKKEQTIYDEY-----DKGYILNWLVANSNEFDMEPLILTLRPN 111

Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183
             +      ++    +                      + +  G+++    +   +  K 
Sbjct: 112 ASYKNFKPSESDTFIYCLNGE-----------------VSLQLGNQVYKACKEDVLYFKA 154

Query: 184 ----VLISRRGRSIDLM 196
                L +   + + ++
Sbjct: 155 KDKHRLYNETDKEVKVL 171


>gi|329770320|ref|ZP_08261704.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325]
 gi|328836744|gb|EGF86398.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325]
          Length = 181

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + R+  + NLT   L  +  L     ++ +R         PS E+ F IL      
Sbjct: 4   IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLA-----SPSMETFFNILQVLGCA 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                D   S  +     E +           
Sbjct: 59  PKDFFDKESSSQKVYYSLEDQTSYEETDDGYE 90


>gi|313904105|ref|ZP_07837485.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
           6]
 gi|313471254|gb|EFR66576.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
           6]
          Length = 123

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +  AI       NLT   LA + G++    +K +        R PS   + ++      
Sbjct: 57  DVIRAIVDARTSQNLTQKELAERTGINQADISKLENGT-----RNPSVNLLKRLAEGMGM 111

Query: 68  T 68
           T
Sbjct: 112 T 112


>gi|300717227|ref|YP_003742030.1| phage repressor protein CI [Erwinia billingiae Eb661]
 gi|299063063|emb|CAX60183.1| Phage repressor protein CI [Erwinia billingiae Eb661]
          Length = 185

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 26/175 (14%)

Query: 21  NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80
            +T   LA+ +G+   +  +  +   EG         I + L                  
Sbjct: 3   GITQGALAKASGVSQPTIWRLTKGEAEGSR---KLVDIARALDV-----------NVQWL 48

Query: 81  RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP--EIRSPHNGIYAIQTQDT 138
              E + +    +        G   S   P G     V  P           Y +     
Sbjct: 49  ANGEGEMRGASAISAIDKVKSGTTISVWGPDGKTGEVVSAPNGAKAKKSWRAYILDRN-- 106

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                  S       G I+I+++ +    GD ++ K  +  +     +       
Sbjct: 107 ----SGCSEATA---GSIVIIDTEVPAESGDLVIAKVNSR-LSVYRYLEGPSNGF 153


>gi|255974995|ref|ZP_05425581.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2]
 gi|256963766|ref|ZP_05567937.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecalis HIP11704]
 gi|257421770|ref|ZP_05598760.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98]
 gi|307271713|ref|ZP_07552984.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|307285503|ref|ZP_07565642.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|255967867|gb|EET98489.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2]
 gi|256954262|gb|EEU70894.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecalis HIP11704]
 gi|257163594|gb|EEU93554.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98]
 gi|306502727|gb|EFM71992.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306511591|gb|EFM80590.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|315155529|gb|EFT99545.1| helix-turn-helix protein [Enterococcus faecalis TX0043]
          Length = 180

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T  Q       + +    +E+             G+    + P  N+     V      +
Sbjct: 57  TPEQFFSQQPLEQKIVYNEEESTLYY----DEEHGYELKWLIPASNEKEMEPVIITFDKN 112

Query: 128 NGI 130
              
Sbjct: 113 GEY 115


>gi|213692944|ref|YP_002323530.1| transcriptional regulator, XRE family [Bifidobacterium longum
          subsp. infantis ATCC 15697]
 gi|213524405|gb|ACJ53152.1| transcriptional regulator, XRE family [Bifidobacterium longum
          subsp. infantis ATCC 15697]
 gi|320459123|dbj|BAJ69744.1| putative transcriptional regulator [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 164

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 18/42 (42%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            ++ E +  +  +  +T   LA + G+  +  ++ +    +
Sbjct: 20 EDQLLEELVSLRAQRGMTQKQLADELGVSQSYVSQIENGRKK 61


>gi|182440719|ref|YP_001828438.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178469235|dbj|BAG23755.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 205

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 42/146 (28%), Gaps = 12/146 (8%)

Query: 1   MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           M   + +       + + I  +      +   LA +A +  ++ ++ +        R  +
Sbjct: 1   MPM-TQEDGELDSLVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENG-----RRRLA 54

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            + +  +  A + ++ QL++    D  +    +     L +P     G        T   
Sbjct: 55  LDQLVTLARALDTSLDQLVETASDDVVSNPTVDGAHGQLRWPIKAEPGMTVIRQRVTEPP 114

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140
            +             +  +       
Sbjct: 115 PDNPARLRAHPGREWLVVLSGTAILL 140


>gi|171778925|ref|ZP_02919987.1| hypothetical protein STRINF_00848 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282571|gb|EDT47995.1| hypothetical protein STRINF_00848 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 65

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + + + ++ + LA   G+   +    ++          S E   KI      TI +
Sbjct: 4  RIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNA-----SLELAHKIAEYFGMTIEE 58

Query: 72 LLDLPF 77
          +     
Sbjct: 59 IFIFDE 64


>gi|119871924|ref|YP_929931.1| XRE family transcriptional regulator [Pyrobaculum islandicum DSM
          4184]
 gi|119673332|gb|ABL87588.1| transcriptional regulator, XRE family [Pyrobaculum islandicum DSM
          4184]
          Length = 516

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   +  +  R  L+ S LAR AG+  ++  + +   I      PS  +++ I  A   
Sbjct: 4  KLGNRLSELRRRKGLSLSRLARLAGVSKSTLWEIENDKI-----SPSINTLWAIANALGV 58

Query: 68 TICQ 71
             +
Sbjct: 59 PFGE 62


>gi|332671809|ref|YP_004454817.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC
           484]
 gi|332340847|gb|AEE47430.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484]
          Length = 221

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   +  + +   LT + +A   G+  ++ ++ +  G     R P+ E +  +     
Sbjct: 34  EGVGSRLRALRQDRGLTLAQVADATGVSLSTLSRLESGG-----RRPTLELLLPLAREYQ 88

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
             + +L+D P +       +  E     F P
Sbjct: 89  VPLDELVDAPATGDPRVFARPFERHGRTFVP 119


>gi|315649281|ref|ZP_07902370.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
 gi|315275269|gb|EFU38638.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
          Length = 122

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + E+   T   LA   G+   + +  ++       R P  E++ ++    + +I  
Sbjct: 6  RISELREQRGWTQEELATSVGITRAALSHYEKN-----RRKPDFETLTRLADLFDVSIDY 60

Query: 72 LLDLPFSDGRTTEKKEKEI 90
          L+     +    + + +  
Sbjct: 61 LIGRTAQEKAVLDPEVRSF 79


>gi|291518587|emb|CBK73808.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Butyrivibrio fibrisolvens 16/4]
          Length = 251

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +  K    I  M +   LT   LA   G+   + ++ +    +G         + K
Sbjct: 1  MLDLT--KTGSFISEMRKEKGLTQKQLADLVGVSDKAVSRWE--TGKGLPDTSIMPELCK 56

Query: 61 ILA 63
           L 
Sbjct: 57 ALD 59


>gi|257484178|ref|ZP_05638219.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298486948|ref|ZP_07005001.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158510|gb|EFH99577.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320324095|gb|EFW80177.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327822|gb|EFW83829.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|320328658|gb|EFW84658.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330885478|gb|EGH19627.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330891025|gb|EGH23686.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020]
 gi|330985445|gb|EGH83548.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331008257|gb|EGH88314.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 182

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L     T+
Sbjct: 4   GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58

Query: 70  CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                     G+                  + + +    PS    F      P     ++
Sbjct: 59  ADFFTFDQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAP---GADS 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              P + S       +              +                   GD        
Sbjct: 116 GEEPIVHSEGEECGLVTRGTVELTIDGQVNILG----------------PGDGYYFPTTL 159

Query: 178 GDIVAKVLISRRGRSIDLMSLN 199
                    +      +++S N
Sbjct: 160 PH----RFRNIGQDEAEIISSN 177


>gi|154482431|ref|ZP_02024879.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC
          27560]
 gi|149736708|gb|EDM52594.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC
          27560]
          Length = 293

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I    ++  L+   +A K G+   +  K +          P   ++  I      ++ 
Sbjct: 5  EQIKHYRKQAGLSQEKMAEKIGVSRQAITKWENGTGT-----PDIANLMAIADLFQISVD 59

Query: 71 Q 71
          +
Sbjct: 60 E 60


>gi|329667149|gb|AEB93097.1| transcriptional regulator, XRE family [Lactobacillus johnsonii
          DPC 6026]
          Length = 114

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   L+ + LA + G+  ++    +        R PS +++  I    ++T
Sbjct: 4  LGENISNLRKSRGLSQAQLADRLGIATSTLGMYE-----TNKREPSNQTLLLIADFFDKT 58

Query: 69 ICQ 71
          + +
Sbjct: 59 VDE 61


>gi|328953825|ref|YP_004371159.1| transcriptional regulator, XRE family [Desulfobacca acetoxidans DSM
           11109]
 gi|328454149|gb|AEB09978.1| transcriptional regulator, XRE family [Desulfobacca acetoxidans DSM
           11109]
          Length = 415

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 2/103 (1%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            E   ++   LA++AGLD +  N+ +      R R  +   +   L  T + +   L   
Sbjct: 17  REAAGISQRALAQQAGLDVSYINRLESGER--RPRRGTLLKLASALRITGQELEAWLMAG 74

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                      +         +G      +    T + W  + 
Sbjct: 75  DLAPTPLLASLRNQLGRTAVAAGPDVSGQTPEAETLSLWERLE 117


>gi|331698894|ref|YP_004335133.1| peptidase S24/S26A/S26B, conserved region [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953583|gb|AEA27280.1| Peptidase S24/S26A/S26B, conserved region [Pseudonocardia
           dioxanivorans CB1190]
          Length = 109

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMS 197
              +  SM P    GD++I+     V  GD +L++   R G +  K      G    +  
Sbjct: 11  VAVRGPSMSPALTDGDVVIVRFGAPVRAGDVVLVRWASRPGQLSVKRARRPEGEGWWVEG 70

Query: 198 LNC--CYPVDTVEMSDI--EWIARILW 220
            N        T+  +++    +AR +W
Sbjct: 71  DNPFGSTDSRTLGPAEVDAVVVAR-MW 96


>gi|291543534|emb|CBL16643.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 201

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + ++  +T   LA    +  T+ +K +         +PS +S+  I      ++ 
Sbjct: 5  EKLQELRKQRGMTQEELATALYVSRTAVSKWESGRG-----YPSIDSLKAISGFFGVSLD 59

Query: 71 Q 71
          Q
Sbjct: 60 Q 60


>gi|302546828|ref|ZP_07299170.1| putative helix-turn-helix domain protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464446|gb|EFL27539.1| putative helix-turn-helix domain protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 102

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + R      ++   LAR+ G+      + +          P  +++   + A    +
Sbjct: 25  GAFLKRARRSRGMSQRALARELGVSQARIAQIENGAST-----PQIDTMAAYITALGGEL 79

Query: 70  CQLLDLPFSDGRTTEKKEKEIP 91
               D      +TT  ++    
Sbjct: 80  TLRADFHDHVTQTTWPEQHPTE 101


>gi|305681668|ref|ZP_07404474.1| bacteriophage CI repressor protein [Corynebacterium matruchotii
          ATCC 14266]
 gi|305658828|gb|EFM48329.1| bacteriophage CI repressor protein [Corynebacterium matruchotii
          ATCC 14266]
          Length = 95

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I R      L    LA  AG+   S +  +          P   ++  I  AT  
Sbjct: 14 ELQDRIQRARRHAGLEQGQLAELAGVSRKSVSNWEIGKTV-----PRRSALIAIAFATGV 68

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
           +  L            K  K 
Sbjct: 69 NLYWLETGESPYPPEPVKDAKS 90


>gi|227505364|ref|ZP_03935413.1| conserved hypothetical protein [Corynebacterium striatum ATCC
          6940]
 gi|227198066|gb|EEI78114.1| conserved hypothetical protein [Corynebacterium striatum ATCC
          6940]
          Length = 116

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATNETI 69
            +    ER  ++   LA  +G+  +  +  +R       R  P   ++FK+  A     
Sbjct: 17 SRLRETRERRGMSQKALAEISGVSRSQISNLERTDKALNLRADPQLSTLFKLAYALEVPP 76


>gi|212709705|ref|ZP_03317833.1| hypothetical protein PROVALCAL_00753 [Providencia alcalifaciens DSM
           30120]
 gi|212687516|gb|EEB47044.1| hypothetical protein PROVALCAL_00753 [Providencia alcalifaciens DSM
           30120]
          Length = 220

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 26/177 (14%)

Query: 11  EAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +    +    +T   LA  +G+   +  +      +G  +      +  I  A    +
Sbjct: 30  ERLQEAMKYRGNMTQGALAEASGVAQPTIWRLVNGKAKGSVK------LVDIANALGVNV 83

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPHN 128
             L +          +++                  S    +G   + V  P  +  P  
Sbjct: 84  DWLANGIGEMEGPNSEQKFR---------LDKSLNISVWDESGETDDFVISPMGKPLPSY 134

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
             Y +            +  P    G I I+++ I    GD ++ +      V K L
Sbjct: 135 RAYVLSRNT------GCAEAP---NGSIAIVDTEITPGTGDLVIAQVNNSISVYKFL 182


>gi|152987569|ref|YP_001349079.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
 gi|150962727|gb|ABR84752.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
          Length = 258

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +  +I R  ER  L+ S LA++AG+  ++ ++ +          PS E+++ + 
Sbjct: 84  LAASIKRERERLGLSISELAKRAGIAKSTLSQLEAGVGN-----PSLETLWALA 132


>gi|331697390|ref|YP_004333629.1| helix-turn-helix domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326952079|gb|AEA25776.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
          CB1190]
          Length = 190

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I +A+ R   R +L+   LAR+AGL  ++ ++ +          PS E+++ +  A    
Sbjct: 16 IADAVRRERTRRDLSLGELARRAGLSKSTLSQLESGAGN-----PSVETLWALAVALGVP 70

Query: 69 I 69
           
Sbjct: 71 F 71


>gi|326442440|ref|ZP_08217174.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 196

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L             + +   ++
Sbjct: 56 VAKALRISAETLYVRAGILDERDRDELETRAVI 88


>gi|325000344|ref|ZP_08121456.1| XRE family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 196

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +     +T + L+   G+  ++ ++ +  G     R P+ E +  +  A    
Sbjct: 12  VGPRLAGLRSERGMTLADLSEATGISVSTLSRLESGG-----RRPTLELLLPLATAHQVP 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+  P         + + +      P                       P++   + 
Sbjct: 67  LDELVAAPPVGDPRVRLRPRRVHGSTVVPLTERPGGLQAFKMIVPWRGDEPAPQVHEGYE 126

Query: 129 GIYAIQTQDTRH 140
            +Y +  +    
Sbjct: 127 WLYVLDGRLRLV 138


>gi|291544357|emb|CBL17466.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 112

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I R  E   +T   L+    L        +R       R PS E++ KI      +
Sbjct: 10 IGDRIRRYRELSRMTQEQLSELCSLSTGYIGHLERGT-----RSPSLETLAKIAQLLRVS 64

Query: 69 ICQLLDLPFSDGRTT 83
          +  L+          
Sbjct: 65 LDDLVFGEAEIHNNM 79


>gi|241889565|ref|ZP_04776863.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC
          10379]
 gi|241863187|gb|EER67571.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC
          10379]
          Length = 181

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + R+  + NLT   L  +  L     ++ +R         PS E+ F IL      
Sbjct: 4  IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLA-----SPSMETFFNILQVLGCA 58

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
               D   +  +     E +          
Sbjct: 59 PKDFFDKESTSQKVYYSLEDQTSYEETDEGY 89


>gi|239932677|ref|ZP_04689630.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
          Length = 181

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 5/136 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + R+ +   +T + L+   G+  ++ ++ +        R PS E +  I  A    +
Sbjct: 2   GPRLRRIRKEREVTLAALSEATGISVSTLSRLESG-----LRRPSLELLLPIAQAHQVPL 56

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +L+  P         K  E       P                +      P     +  
Sbjct: 57  DELVGAPPVGDPRVRSKPIERYGRTHWPLTRQPGGLQAYKVLEPRRKLEPEPRTHEGYEW 116

Query: 130 IYAIQTQDTRHKTQDT 145
           +Y +  +      ++ 
Sbjct: 117 LYVLSGRLRLVLGEND 132


>gi|196230222|ref|ZP_03129085.1| transcriptional regulator, XRE family [Chthoniobacter flavus
           Ellin428]
 gi|196225819|gb|EDY20326.1| transcriptional regulator, XRE family [Chthoniobacter flavus
           Ellin428]
          Length = 207

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +     L+   LA ++G+  +  +  +R         P+   + K+ +  
Sbjct: 17  NQRIAGRVRELRAAQGLSLDTLANRSGVSRSMISLIERGES-----SPTAVVLEKLASGL 71

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
             T+  L D   +                     + G+    + P G
Sbjct: 72  GATLPSLFDGLSAKASGPTSPVSRREDQPEWRDPASGYIRRNISPVG 118


>gi|307151755|ref|YP_003887139.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306981983|gb|ADN13864.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 78

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+    +  + +   L+   LA    LD +     +R       R  S  +I KI  A 
Sbjct: 10 RKQFGNRLRYLRQTRGLSQEALADLCNLDRSYIGGVERGE-----RNISLLNIKKIADAL 64

Query: 66 NETICQLLDLPF 77
            +  +  D   
Sbjct: 65 GISPKEFFDEQD 76


>gi|134298741|ref|YP_001112237.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051441|gb|ABO49412.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 77

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +  ++   I  + E+  L+   LA   G+  +   K +     G     S  ++ KI 
Sbjct: 1  MVTLIQLGHKIKNLREKKGLSQVQLAHMVGVTNSLICKIETGQTSG-----SIHTLKKIA 55

Query: 63 AATNET 68
             + +
Sbjct: 56 NKLDVS 61


>gi|53716572|ref|YP_105616.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|53722368|ref|YP_111353.1| DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|67642241|ref|ZP_00441000.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|76818883|ref|YP_335523.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121597603|ref|YP_990060.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124381912|ref|YP_001024022.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126445750|ref|YP_001078595.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|126456449|ref|YP_001075854.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|166999565|ref|ZP_02265402.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|167742899|ref|ZP_02415673.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 14]
 gi|167828452|ref|ZP_02459923.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 9]
 gi|167849906|ref|ZP_02475414.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei B7210]
 gi|167898508|ref|ZP_02485909.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 7894]
 gi|167906857|ref|ZP_02494062.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei NCTC 13177]
 gi|167915218|ref|ZP_02502309.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 112]
 gi|167923046|ref|ZP_02510137.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei BCC215]
 gi|217418478|ref|ZP_03449985.1| DNA-binding protein [Burkholderia pseudomallei 576]
 gi|226198499|ref|ZP_03794066.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
 gi|242312902|ref|ZP_04811919.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
 gi|254173994|ref|ZP_04880657.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254183723|ref|ZP_04890315.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|254191201|ref|ZP_04897706.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254193556|ref|ZP_04899990.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|254200408|ref|ZP_04906773.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|254204434|ref|ZP_04910787.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|254265606|ref|ZP_04956471.1| DNA-binding protein [Burkholderia pseudomallei 1710a]
 gi|254356660|ref|ZP_04972935.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|52212782|emb|CAH38814.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|52422542|gb|AAU46112.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|76583356|gb|ABA52830.1| possible transcriptional regulator, XRE family, CUPIN domain
          [Burkholderia pseudomallei 1710b]
 gi|121225401|gb|ABM48932.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124289932|gb|ABM99201.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126230217|gb|ABN93630.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|126238604|gb|ABO01716.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|147748020|gb|EDK55095.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|147754020|gb|EDK61084.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|148025687|gb|EDK83810.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|157938874|gb|EDO94544.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160695041|gb|EDP85011.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|169650309|gb|EDS83002.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|184214256|gb|EDU11299.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|217397782|gb|EEC37797.1| DNA-binding protein [Burkholderia pseudomallei 576]
 gi|225929422|gb|EEH25442.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
 gi|238523345|gb|EEP86784.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|242136141|gb|EES22544.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
 gi|243064397|gb|EES46583.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|254216608|gb|EET05993.1| DNA-binding protein [Burkholderia pseudomallei 1710a]
          Length = 94

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+    +   AI ++ E    +   LA  AGL+ +   + +R          S  ++ K
Sbjct: 1  MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTE 84
          +  A    I +LL      G    
Sbjct: 55 LARAFGVPIARLLSPAGDAGPPPH 78


>gi|330989818|gb|EGH87921.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 134

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 8/103 (7%)

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
           P                    Y         +    SM  +     D++ ++ +++    
Sbjct: 33  PAAAHIEQDFSSGRLMDVRAPY-----IYVAQIDSDSMRGIGIFDADLIAVDRSLKAGHK 87

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             ++     G+ + K L  +    + L S N  Y    +   +
Sbjct: 88  SIVIAAVN-GEPMCKRLCIKGDD-VSLQSENPSYAAKYILKGE 128


>gi|304409138|ref|ZP_07390759.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           OS183]
 gi|307303141|ref|ZP_07582896.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           BA175]
 gi|304352959|gb|EFM17356.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           OS183]
 gi|306913501|gb|EFN43923.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           BA175]
          Length = 135

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 12/120 (10%)

Query: 108 VFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILN 160
                        P         S    +    +       +  SM  +    GD+LI++
Sbjct: 5   PIHASAGITGFESPAAEYGQLGLSLDELLVVHPSATFIGIAKGDSMQGVGIFYGDLLIVD 64

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
                  GD ++     G+ V K+L         L+S N  +    + +  +      ++
Sbjct: 65  RQETARHGDVIVANFN-GEFVCKILDKT---HRMLLSSNEQHQPQPIHDYDNFTIEGVVI 120


>gi|228915212|ref|ZP_04078807.1| transcriptional regulator [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228844443|gb|EEM89499.1| transcriptional regulator [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 117

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           FSH++    +  + E+  +T   LA   G+   S             + P T ++ KI 
Sbjct: 1  MFSHER----LKSLIEKKGITQQQLADVIGVSHVSVYNYVEG-----KKAPGTRTLQKIA 51

Query: 63 AAT 65
             
Sbjct: 52 NYL 54


>gi|228950422|ref|ZP_04112582.1| transcriptional regulator [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228809237|gb|EEM55698.1| transcriptional regulator [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 117

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           FSH++    +  + E+  +T   LA   G+   S             + P T ++ KI 
Sbjct: 1  MFSHER----LKSLIEKKGITQQQLADVIGVSHVSVYNYVEG-----KKAPGTRTLQKIA 51

Query: 63 AAT 65
             
Sbjct: 52 NYL 54


>gi|157693790|ref|YP_001488252.1| hypothetical protein BPUM_3038 [Bacillus pumilus SAFR-032]
 gi|157682548|gb|ABV63692.1| hypothetical protein BPUM_3038 [Bacillus pumilus SAFR-032]
          Length = 132

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 1/124 (0%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E   L+ + LA  + +     ++ +     G  + P+ + +   L    E +
Sbjct: 4   GAYLRALREEKKLSVNQLAMYSEVSAAGISRIENGKR-GIPKPPTIKKLASALKVPYEDM 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            Q            + KE+E+ L     + +           G+ W+T+   EI   +  
Sbjct: 63  MQAAGYIEEASSVHQLKEEEMALSKIKEAAAQYELGDLELFDGDIWSTLSKKEIEDLNRY 122

Query: 130 IYAI 133
           +  I
Sbjct: 123 LLFI 126


>gi|147677060|ref|YP_001211275.1| hypothetical protein PTH_0725 [Pelotomaculum thermopropionicum
          SI]
 gi|146273157|dbj|BAF58906.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 355

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E +        L+   LA + G+ P + +K +R         PS+  + ++  A    
Sbjct: 2  VGERLRLARRAAGLSLRELANRVGVSPQAISKYERGLDI-----PSSGVLLRLAEALGVN 56

Query: 69 ICQLLDLPF 77
          +        
Sbjct: 57 VEYFFRTRR 65


>gi|86137152|ref|ZP_01055730.1| DNA-binding protein, putative [Roseobacter sp. MED193]
 gi|85826476|gb|EAQ46673.1| DNA-binding protein, putative [Roseobacter sp. MED193]
          Length = 187

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 38/144 (26%), Gaps = 11/144 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +   I   + ++     L+ S  A   G+      + +R         P+  +++KI  
Sbjct: 1   MTEDIIGANLRKIRNAAGLSLSKAADLTGVSKAMLGQIERGES-----SPTIATLWKIAK 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG------VFPTGNKWNT 117
             +  +  L+  P +D        + +             FD                  
Sbjct: 56  GFHLPLTALIGAPDADQPDPAVAFETVQFPGSIAVKIIFPFDPALGGETFRISLTPGQTH 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHK 141
           V  P        ++ +       +
Sbjct: 116 VSQPHESGVVEEVFVLSGDMEVLR 139


>gi|326692876|ref|ZP_08229881.1| Rep protein [Leuconostoc argentinum KCTC 3773]
          Length = 118

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I +   ++A+   L+ S L  K G+  TS    K          P  E+I K     +
Sbjct: 2  ETILDRTKKLAKEKGLSLSELEEKIGIAKTSIYSWKSNI-------PKGETIQKTADVLD 54

Query: 67 ETICQLLDLPFSDGR 81
           +   LL        
Sbjct: 55 TSTDYLLGRTDDPTP 69


>gi|326804313|ref|YP_004322131.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326651167|gb|AEA01350.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 328

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + I  + ++   +   LA++  +   S +K +R         P  E I  +     
Sbjct: 3  LADKILHLRKQAGWSQEELAQQLNVSRQSISKWERAEAI-----PDLEKILDLARIFG 55


>gi|326388406|ref|ZP_08210002.1| XRE family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207138|gb|EGD57959.1| XRE family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 485

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 5/124 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I R+     LT   +A   G+ P+     +R       R  + + + ++  +    
Sbjct: 29  LGPRIKRLRRELGLTQQAMAEDLGISPSYVALIERNQ-----RPLTADLLLRLARSYKLD 83

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L      D         + P+       S    D      G     + +        
Sbjct: 84  MSELAADERDDYARRLSGMLKDPIFAEIDLTSLEISDIATSFPGVAEAMLRLHGAYIREQ 143

Query: 129 GIYA 132
              A
Sbjct: 144 QALA 147


>gi|299537453|ref|ZP_07050747.1| Signal peptidase I T [Lysinibacillus fusiformis ZC1]
 gi|298727014|gb|EFI67595.1| Signal peptidase I T [Lysinibacillus fusiformis ZC1]
          Length = 186

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
            K Q  SM P Y   DI+I++   ++      +   P   ++  K +I   G  +++ 
Sbjct: 38  IKVQGASMYPTYHDKDIIIVSKTSKIERFDQIVFQSPVEDELYIKRVIGLPGDKVEMK 95


>gi|262283318|ref|ZP_06061084.1| cro/CI family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|262260809|gb|EEY79509.1| cro/CI family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 120

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  +    NLT + +A+   +   S+ + +        R PS+E++ K     N +  
Sbjct: 4  ERLKALRLEANLTQNDIAKSLNISQPSYAQWENG-----RRKPSSETLEKFAQFYNVSTD 58

Query: 71 QLLDLPFSDGRTTEK 85
           LL            
Sbjct: 59 YLLGKSDYKNSDEID 73


>gi|221640096|ref|YP_002526358.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          KD131]
 gi|221160877|gb|ACM01857.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides
          KD131]
          Length = 211

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S+  I + + ++ +   L+ SGL+ ++G+   + ++ +R         PS  +I +I 
Sbjct: 1  MNSNHLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGR-----PSLRTIERIS 55

Query: 63 AATNETICQLLDLPFSDGRTT 83
           A       LL++P       
Sbjct: 56 QALGVPPFWLLEMPDQHNPEH 76


>gi|169335255|ref|ZP_02862448.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257993|gb|EDS71959.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 143

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I + I  + + + LT   L  K G+   + +  ++       R  S E   K+    N
Sbjct: 18 NTIGDRIKELRKENKLTQQELGEKLGVHSNTISMYEKGN-----RKVSAEMANKLSEIFN 72

Query: 67 ET 68
           +
Sbjct: 73 VS 74


>gi|150398411|ref|YP_001328878.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150029926|gb|ABR62043.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 125

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EA+  +  R  +T   +A   G+ P   +  +     G+   PS + + +
Sbjct: 1  MTPF-----GEAVRELRRRKGVTQKEMAAAIGVSPAYLSALE----HGKRGAPSFDFLQR 51

Query: 61 ILAATNETICQ 71
          +    N    +
Sbjct: 52 VAGYFNVIWDE 62


>gi|134096914|ref|YP_001102575.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909537|emb|CAL99649.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 285

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            AI  + ER  ++   L+++ GL   + +  +        R P+ E +  +L A   T  
Sbjct: 17  AAIRSIRERSGVSGRELSKRLGLSHGTVSHWETG-----RRVPTPEDVASLLTAAGITGD 71

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           +   +       +E     + +   P   +G         +  +W  +G+P +    +  
Sbjct: 72  EKQRVVELARHASEPNWLTVGMPGIPQQLAGAVECERAASSIAEWAPMGLPGLLQTADYA 131

Query: 131 YAIQT 135
             I  
Sbjct: 132 RTISK 136


>gi|66395850|ref|YP_240187.1| ORF047 [Staphylococcus phage EW]
 gi|62636272|gb|AAX91383.1| ORF047 [Staphylococcus phage EW]
          Length = 109

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K + E ++++ +  N+T   L+   G+  ++ +   +       R    + +       
Sbjct: 7  RKILSENLEQLMKERNITQVELSEAIGVSQSTVSNWLK--ESKYPRISKIQELANYFNVP 64

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
             I +  +L          KE            
Sbjct: 65 KSRITEENNLHQETIAAHFDKENLTEEEMDEVMQ 98


>gi|29377137|ref|NP_816291.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
           V583]
 gi|227519665|ref|ZP_03949714.1| transcriptional regulator [Enterococcus faecalis TX0104]
 gi|227554145|ref|ZP_03984192.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|229549226|ref|ZP_04437951.1| transcriptional regulator [Enterococcus faecalis ATCC 29200]
 gi|255971941|ref|ZP_05422527.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1]
 gi|256616839|ref|ZP_05473685.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
           ATCC 4200]
 gi|256763285|ref|ZP_05503865.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3]
 gi|256853958|ref|ZP_05559323.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256957887|ref|ZP_05562058.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
           DS5]
 gi|256961092|ref|ZP_05565263.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecalis Merz96]
 gi|257079824|ref|ZP_05574185.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecalis JH1]
 gi|257081830|ref|ZP_05576191.1| cro/CI family transcriptional regulator [Enterococcus faecalis
           E1Sol]
 gi|257084372|ref|ZP_05578733.1| cro/CI family transcriptional regulator [Enterococcus faecalis
           Fly1]
 gi|257087629|ref|ZP_05581990.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecalis D6]
 gi|257090791|ref|ZP_05585152.1| cro/CI family transcriptional regulator [Enterococcus faecalis
           CH188]
 gi|257416836|ref|ZP_05593830.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
           AR01/DG]
 gi|257420051|ref|ZP_05597045.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11]
 gi|293384038|ref|ZP_06629932.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
           R712]
 gi|293386851|ref|ZP_06631421.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
           S613]
 gi|294779476|ref|ZP_06744872.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|300861098|ref|ZP_07107185.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|307270635|ref|ZP_07551926.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|307276897|ref|ZP_07558007.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307290339|ref|ZP_07570254.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|312900023|ref|ZP_07759340.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|312902423|ref|ZP_07761629.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|312908012|ref|ZP_07766995.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312953680|ref|ZP_07772517.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|312978460|ref|ZP_07790198.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|29344603|gb|AAO82361.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
           V583]
 gi|227072889|gb|EEI10852.1| transcriptional regulator [Enterococcus faecalis TX0104]
 gi|227176771|gb|EEI57743.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|229305463|gb|EEN71459.1| transcriptional regulator [Enterococcus faecalis ATCC 29200]
 gi|255962959|gb|EET95435.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1]
 gi|256596366|gb|EEU15542.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
           ATCC 4200]
 gi|256684536|gb|EEU24231.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3]
 gi|256710901|gb|EEU25944.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256948383|gb|EEU65015.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
           DS5]
 gi|256951588|gb|EEU68220.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecalis Merz96]
 gi|256987854|gb|EEU75156.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecalis JH1]
 gi|256989860|gb|EEU77162.1| cro/CI family transcriptional regulator [Enterococcus faecalis
           E1Sol]
 gi|256992402|gb|EEU79704.1| cro/CI family transcriptional regulator [Enterococcus faecalis
           Fly1]
 gi|256995659|gb|EEU82961.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecalis D6]
 gi|256999603|gb|EEU86123.1| cro/CI family transcriptional regulator [Enterococcus faecalis
           CH188]
 gi|257158664|gb|EEU88624.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
           ARO1/DG]
 gi|257161879|gb|EEU91839.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11]
 gi|291078518|gb|EFE15882.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
           R712]
 gi|291083685|gb|EFE20648.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
           S613]
 gi|294453433|gb|EFG21839.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|295113617|emb|CBL32254.1| Predicted transcriptional regulators [Enterococcus sp. 7L76]
 gi|300850137|gb|EFK77887.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|306498532|gb|EFM68034.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306506320|gb|EFM75480.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306512945|gb|EFM81586.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|310626103|gb|EFQ09386.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|310628518|gb|EFQ11801.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|310634093|gb|EFQ17376.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|311288609|gb|EFQ67165.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|311292780|gb|EFQ71336.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|315025573|gb|EFT37505.1| helix-turn-helix protein [Enterococcus faecalis TX2137]
 gi|315030296|gb|EFT42228.1| helix-turn-helix protein [Enterococcus faecalis TX4000]
 gi|315032780|gb|EFT44712.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
 gi|315035163|gb|EFT47095.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
 gi|315143822|gb|EFT87838.1| helix-turn-helix protein [Enterococcus faecalis TX2141]
 gi|315148623|gb|EFT92639.1| helix-turn-helix protein [Enterococcus faecalis TX4244]
 gi|315149967|gb|EFT93983.1| helix-turn-helix protein [Enterococcus faecalis TX0012]
 gi|315151947|gb|EFT95963.1| helix-turn-helix protein [Enterococcus faecalis TX0031]
 gi|315159172|gb|EFU03189.1| helix-turn-helix protein [Enterococcus faecalis TX0312]
 gi|315162150|gb|EFU06167.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315168640|gb|EFU12657.1| helix-turn-helix protein [Enterococcus faecalis TX1341]
 gi|315170416|gb|EFU14433.1| helix-turn-helix protein [Enterococcus faecalis TX1342]
 gi|315173738|gb|EFU17755.1| helix-turn-helix protein [Enterococcus faecalis TX1346]
 gi|315576252|gb|EFU88443.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
 gi|315579167|gb|EFU91358.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
 gi|315582897|gb|EFU95088.1| helix-turn-helix protein [Enterococcus faecalis TX0309A]
 gi|323481583|gb|ADX81022.1| helix-turn-helix/ cupin_2 family protein [Enterococcus faecalis 62]
 gi|327535878|gb|AEA94712.1| cro/CI family transcriptional regulator [Enterococcus faecalis
           OG1RF]
          Length = 180

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T  Q       + +    +E+             G+    + P  N+     V      +
Sbjct: 57  TPEQFFSQQPLEQKIVYNEEESTLYY----DEEHGYELKWLIPASNEKEMEPVIITFDKN 112

Query: 128 NGI 130
              
Sbjct: 113 GEY 115


>gi|313634226|gb|EFS00863.1| DNA-binding protein [Listeria seeligeri FSL N1-067]
          Length = 104

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|253987942|ref|YP_003039298.1| transcription regulator [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779392|emb|CAQ82553.1| similar to transcription regulator and to restriction enzyme
          contro elements [Photorhabdus asymbiotica]
          Length = 78

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +  + +   ++    A K G+D T  +  +R       R P+ E I  I +     +
Sbjct: 12 GQRVRHLRQSSGMSQEAFADKCGIDRTYISGIERGI-----RNPTLEVINIIASGLQIEL 66

Query: 70 CQLLDL 75
            L D 
Sbjct: 67 TDLFDF 72


>gi|297587137|ref|ZP_06945782.1| XRE family transcriptional regulator [Finegoldia magna ATCC
          53516]
 gi|297575118|gb|EFH93837.1| XRE family transcriptional regulator [Finegoldia magna ATCC
          53516]
          Length = 134

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             + ++ E   LT + LA K G+   + +  +  G   R +    +   KI    N
Sbjct: 4  GAKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQ----DMYKKIAEFFN 56


>gi|169335178|ref|ZP_02862371.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257916|gb|EDS71882.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 172

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I ++ +   L+   L    G+   +  + +   I  R + P  ESI   L     
Sbjct: 5  EIGNRIKQVRQEKGLSLRELGEIIGISGATIQRYENGLIN-RLKLPVIESIANALGVNPS 63

Query: 68 T 68
           
Sbjct: 64 W 64


>gi|161528460|ref|YP_001582286.1| XRE family transcriptional regulator [Nitrosopumilus maritimus
          SCM1]
 gi|160339761|gb|ABX12848.1| transcriptional regulator, XRE family [Nitrosopumilus maritimus
          SCM1]
          Length = 185

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          E+I +M ++  +T   LA   G+  +  N+ +    +     PS E+  KI    
Sbjct: 6  ESIKQMRQKLGITQKKLASMTGVSTSMINQIESGRSQ-----PSYETAKKIFENL 55


>gi|323483984|ref|ZP_08089357.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum
           WAL-14163]
 gi|323402700|gb|EGA95025.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum
           WAL-14163]
          Length = 183

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 53/174 (30%), Gaps = 9/174 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I R+ E + L+   L+R +G+  +   + +R         P+  +++KI       
Sbjct: 8   VAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGN-----PTISTLWKISNGMKVP 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L   P +  +  +  E +  L       +   F          +  + + E     +
Sbjct: 63  FDALTVRPENLYQIVKTSEIQPLLEDNGKVRNYPVFPDDENRRFAVY-YLELEEGSFWES 121

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIV 181
             +     +     +    +  Y      I+     +    D +      GD  
Sbjct: 122 EPHLKGAAEFITVFKGQVEI--YADSQPFIVGQGESIRFRADTVHSYKNAGDGT 173


>gi|270262620|ref|ZP_06190891.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043304|gb|EFA16397.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 462

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E  + + S LA +AG+     +K +R         P+   + ++  A 
Sbjct: 282 NQRIGARIRIEREARHWSLSDLAERAGVSRAMVHKIERGDS-----SPTAMLLARLSGAF 336

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLL 93
             ++ +L+    +      ++E +   +
Sbjct: 337 GLSMSKLIARAETQEGRLLRREDQPVWV 364


>gi|254773353|ref|ZP_05214869.1| hypothetical protein MaviaA2_01546 [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 477

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             + R+ E   LT   LAR  GL  +  N+ +     
Sbjct: 10 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRP 47


>gi|171778203|ref|ZP_02919432.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283027|gb|EDT48451.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 184

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  + +  N++   +A K  +   + +K +R        +P   S+  +    + 
Sbjct: 2   ELERRLAELRKEKNVSQEEIAEKLYVSRQTISKWERGKT-----YPDINSLLLMANYFDV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
           ++  L+       +    + +    L F       F
Sbjct: 57  SLDHLIKGDVDTMKHQVDQSQFKRWLIFGGISWFIF 92


>gi|332559101|ref|ZP_08413423.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
 gi|332276813|gb|EGJ22128.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
          Length = 211

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S+  I + + ++ +   L+ SGL+ ++G+   + ++ +R         PS  +I +I 
Sbjct: 1  MNSNHLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGR-----PSLRTIERIS 55

Query: 63 AATNETICQLLDLPFSDGRTT 83
           A       LL++P       
Sbjct: 56 QALGVPPFWLLEMPDQHNPEH 76


>gi|310640682|ref|YP_003945440.1| transcriptional regulator, xre family [Paenibacillus polymyxa
          SC2]
 gi|309245632|gb|ADO55199.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa
          SC2]
          Length = 122

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + E   L    LA+  G+   + +  ++       R P  E++ K+      TI
Sbjct: 4  GTRIAELREHKGLKQEELAQSLGITRAALSHYEKN-----RRKPDFETLTKLADIFEVTI 58

Query: 70 CQLLDLPFSDGRTTEKKEKEI 90
            L+          +   +E 
Sbjct: 59 DYLVGRTSHPTAILDSDVREF 79


>gi|309799302|ref|ZP_07693549.1| conserved domain protein [Streptococcus infantis SK1302]
 gi|308117080|gb|EFO54509.1| conserved domain protein [Streptococcus infantis SK1302]
          Length = 67

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    N
Sbjct: 2  LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIVIALKIAQIFN 54


>gi|304407873|ref|ZP_07389524.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304343356|gb|EFM09199.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 95

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 3  SFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            + +  I   I R+ +   +T   LA   G+D  S ++ +          P  E+I K+
Sbjct: 1  MSTQEAAIGNRISRIRKHRGITQQQLADALGIDRASLSQIETCRY-----SPRAETIRKL 55

Query: 62 LAATNETICQLLDLP 76
                 I  +   P
Sbjct: 56 SDFFQLPIGDIFFNP 70


>gi|227823807|ref|YP_002827780.1| transcriptional regulator, XRE family with cupin sensor
           [Sinorhizobium fredii NGR234]
 gi|227342809|gb|ACP27027.1| transcriptional regulator, XRE family with cupin sensor
           [Sinorhizobium fredii NGR234]
          Length = 220

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +   HNL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 42  DIGNRLRHVRLMHNLSQRELAKRAGVTNSTISLIESNASN-----PSVGALKRILDGIPI 96

Query: 68  TICQLLDLPFSDGRTTE 84
            + +         R   
Sbjct: 97  GLAEFFSFEPERPRKAF 113


>gi|194015377|ref|ZP_03053993.1| YvaO [Bacillus pumilus ATCC 7061]
 gi|194012781|gb|EDW22347.1| YvaO [Bacillus pumilus ATCC 7061]
          Length = 133

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 1/124 (0%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E   L+ + LA  + +     ++ +     G  + P+ + +   L    E +
Sbjct: 4   GAYLRALREEKKLSVNQLAMYSEVSAAGISRIENGKR-GIPKPPTIKKLAGALKVPYEEM 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            Q            + KE+E  L     + +           G+ W+T+   EI   +  
Sbjct: 63  MQAAGYIEEASSVHQLKEEETALSKIKEAAAQYELGDLELFDGDIWSTLSKKEIEDLNRY 122

Query: 130 IYAI 133
           +  I
Sbjct: 123 LLFI 126


>gi|317484077|ref|ZP_07943008.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316924665|gb|EFV45820.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 97

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            AI        L+  GLA +  + P+  +  +        R+PS E + +I  A N
Sbjct: 26 GTAIRHFRHEAGLSQDGLADRMDVSPSYISMLESG-----KRYPSIEMLIRIALALN 77


>gi|257877826|ref|ZP_05657479.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257811992|gb|EEV40812.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 209

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   +T   LA+   + P + +K +R         P  +++  +    N 
Sbjct: 3  DLGKNIKELRQSKKMTQKSLAKMLNVTPQAVSKWERNESN-----PDIQTLISLSNYFNV 57

Query: 68 TICQL 72
          ++ ++
Sbjct: 58 SVDEM 62


>gi|257469363|ref|ZP_05633457.1| hypothetical protein FulcA4_08479 [Fusobacterium ulcerans ATCC
          49185]
 gi|317063609|ref|ZP_07928094.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
 gi|313689285|gb|EFS26120.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
          Length = 168

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 20/39 (51%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          K++  I ++ +++ ++   LA+  G+   S +K +    
Sbjct: 2  KLFVKIQQLRKQNGMSQEKLAQLLGVSRQSVSKWESGQS 40


>gi|167754979|ref|ZP_02427106.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402]
 gi|167705029|gb|EDS19608.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402]
          Length = 73

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 3  SFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
               KI       I  +  + N++   LA + GL     +  +R       R  S +SI
Sbjct: 1  MIKMDKIEVKFGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGT-----RNVSLKSI 55

Query: 59 FKILAATNETICQLLDLP 76
           KI       + +L D  
Sbjct: 56 EKIANGFAVNLKELFDFK 73


>gi|153834790|ref|ZP_01987457.1| helix-turn-helix domain protein [Vibrio harveyi HY01]
 gi|148868768|gb|EDL67839.1| helix-turn-helix domain protein [Vibrio harveyi HY01]
          Length = 306

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 13/130 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARK--------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            E + R+ E   LT   LA K        A +DP + ++ +R         P+T    K+
Sbjct: 3   GEYLKRLREEVGLTQKELATKLNLASVDFASIDPVTISRWERGTT-----APTTVKAIKV 57

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L      +   L     +       E        P +              +  +   + 
Sbjct: 58  LRVLTTDLMPFLSSLPVESGKNIFDEIVEYRFKSPWAKLMSDSYEAPTQCKDVLDAPLLE 117

Query: 122 EIRSPHNGIY 131
             +  +    
Sbjct: 118 SSQDDYLNSL 127


>gi|134103762|ref|YP_001109423.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916385|emb|CAM06498.1| transcriptional regulator, XRE family with cupin sensor
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 194

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 43/140 (30%), Gaps = 9/140 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  R   T + L+   G+  ++ ++ +        R P  E +  +  A    
Sbjct: 12  VGPRLRALRRRSGATLTALSETTGIPVSTLSRLESGH-----RKPGLELLLPLANAYQVP 66

Query: 69  ICQLLDLPFSDGRTTEKKE---KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + +L+  P S       +      + ++       G      + P G   +    P    
Sbjct: 67  LDELVGAPASGDPRVHPRPITRNGMTVIPLTRKPGGLQAFKQILPAGPT-DVEPDPRSHE 125

Query: 126 PHNGIYAIQTQDTRHKTQDT 145
            ++ +Y +  +         
Sbjct: 126 GYHWLYVLNGRLRLVLGDQD 145


>gi|167032895|ref|YP_001668126.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859383|gb|ABY97790.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 104

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   +  A+ R  +   LT + LA + G DP + ++ +          PS +++ +   
Sbjct: 1  MTRSALGFALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYT-----PSIDALMEFAQ 55

Query: 64 ATNETICQLLDLPF 77
                      P 
Sbjct: 56 VLGVKPKDFFAEPD 69


>gi|70729712|ref|YP_259451.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68344011|gb|AAY91617.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 182

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 57/191 (29%), Gaps = 18/191 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L     ++
Sbjct: 4   GTRLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSVSSLKKLLEGIPMSL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                         +   +   +         G     +   G       +  +R  +  
Sbjct: 59  ADFFTFD-------QPPREHQYVFRANEQPDLGRDGLRLLMIGAPVANRQMRFLREQY-A 110

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV-NCGDRLLIKPRTGDIVAKVLISR 188
             A   ++     +      + R    L ++  + V N GD                 + 
Sbjct: 111 PGASSGEEAIVHAEGEECGLVTRGTVELTVDGQVSVLNPGDGYYFPTTLPHS----FRNI 166

Query: 189 RGRSIDLMSLN 199
                +++S N
Sbjct: 167 GQDEAEIISAN 177


>gi|56696154|ref|YP_166510.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56677891|gb|AAV94557.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 130

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           + +    E   +T + LAR+ G+   + N  +    E R    S 
Sbjct: 16 GDRLAAAREASGMTQAQLARRLGVKKATINGWEDDLSEPRANRLSM 61


>gi|325695326|gb|EGD37226.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK150]
 gi|332365308|gb|EGJ43071.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK1059]
          Length = 168

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 5/145 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E + ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL    +         ++    Y+    S GF+             +       P 
Sbjct: 57  TTDYLLLEDSNKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152
                +            ++    +
Sbjct: 117 KFTALVWLTFFLLIASTMAINKALK 141


>gi|311071151|ref|YP_003976074.1| phage element (ICEBs1)transcriptional regulator (Xre family)
           protein [Bacillus atrophaeus 1942]
 gi|310871668|gb|ADP35143.1| phage element (ICEBs1)transcriptional regulator (Xre family)
           protein [Bacillus atrophaeus 1942]
          Length = 127

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + ++  LT   LA K  L  +S  + ++  I      P++E++ KI    + + 
Sbjct: 4   GHKLKTLRKQRGLTQKELAEKLFLSQSSITRFEKDEI-----LPTSETLSKIANYFDVS- 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             +  L        +K                          G+    
Sbjct: 58  --IDFLLDRPQPPQKKNSNLEKAFNEAIEELKDEETLLFMKNGDIDEE 103


>gi|312141149|ref|YP_004008485.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|325674029|ref|ZP_08153719.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC
          33707]
 gi|311890488|emb|CBH49806.1| putative transcriptional regulator [Rhodococcus equi 103S]
 gi|325555294|gb|EGD24966.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC
          33707]
          Length = 155

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I   I    E   ++   LA+ AG+     ++ +R       R PS + + +I     
Sbjct: 20 QDIGSFIRSQREAAQVSLRQLAQLAGVSNPYLSQIERG-----LRKPSADVLAQIAKGLR 74

Query: 67 ETICQLLDLPFSDGRTTEKKEK 88
           +   L        +      +
Sbjct: 75 VSSEVLYVQAGILEQRPHSPVR 96


>gi|312200129|ref|YP_004020190.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311231465|gb|ADP84320.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 273

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +   +++ + I       +++   LA++AG+     ++ +R       R PS E + +
Sbjct: 1  MAALHVRELGDYIRDQRRAAHISLRQLAQQAGVSNPYLSQIERG-----LRKPSAEILQQ 55

Query: 61 ILAATNET 68
          I  A   +
Sbjct: 56 IAKALRIS 63


>gi|226322725|ref|ZP_03798243.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758]
 gi|225208886|gb|EEG91240.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758]
          Length = 194

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 57/203 (28%), Gaps = 20/203 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +H  I E I    ++  +T   L    GL     +  ++         P+ +S+ +
Sbjct: 1   MLDLAH--IGERIRECRKKKMMTIRVLGEYTGLSAGYLSMLEQNKT-----SPNVDSLAR 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I  A +  I   L+          ++E    L                    + +  + +
Sbjct: 54  ICEALDIDIQYALEGEMPGKTVIHREEMSKHLYPEENMTVEVADFGQG---ESIFEYITI 110

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL------YRKGDILILNSAIQV---NCG-DR 170
               S     Y     +     + T  + +         GD + + S  +    N G + 
Sbjct: 111 EPGESAKKEEYRHVFSEMCMVIKGTLNVEVEGKICSLHPGDSVYIKSRERHSISNPGKEP 170

Query: 171 LLIKPRTGDIVAKVLISRRGRSI 193
            +        V +       + +
Sbjct: 171 CVSIWVYHRDVPRRFERNENKIV 193


>gi|224535505|ref|ZP_03676044.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224522872|gb|EEF91977.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 69

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     ++I + I  + +   L+ + LA    + P +  + +             + + K
Sbjct: 1  MEMNDRERIGKRIAEIRKSKGLSQAKLAELTDIAPGNIARIETGRYST-----GIDLLSK 55

Query: 61 ILAATNE 67
          I  A   
Sbjct: 56 IADALGY 62


>gi|160913567|ref|ZP_02076257.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991]
 gi|158434028|gb|EDP12317.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991]
          Length = 227

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
              +KI   I    +   LT   L    G+   S +K +        
Sbjct: 1  MMDQRKIGIFIATCRKEKGLTQEQLGELLGVTNKSISKWENGKSLPDP 48


>gi|254301853|ref|ZP_04969296.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|157811641|gb|EDO88811.1| DNA-binding protein [Burkholderia pseudomallei 406e]
          Length = 88

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+    +   AI ++ E    +   LA  AGL+ +   + +R          S  ++ K
Sbjct: 1  MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTE 84
          +  A    I +LL      G    
Sbjct: 55 LARAFGVPIARLLSPAGDAGPPPH 78


>gi|291286562|ref|YP_003503378.1| helix-turn-helix domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883722|gb|ADD67422.1| helix-turn-helix domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 351

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 5/146 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + E   ++ + L    G+   +    +       +R PS     +I      ++  
Sbjct: 2   RLKELREERGVSQAELGEFLGVSRQTIAAWENG-----DREPSVLQFSRICKLLKVSLEL 56

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           LLD   S       +  +  LL                        V    I        
Sbjct: 57  LLDEEHSAEPVLLFRADKRELLSNDMRRICATKAYDYANIEAIVGAVPTIPITHHLYEYD 116

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDIL 157
            +  +    +T+D   +     GD+L
Sbjct: 117 EVVIEKKALETRDWLGIEDAPLGDVL 142


>gi|121730295|ref|ZP_01682667.1| fumarate reductase flavoprotein subunit [Vibrio cholerae V52]
 gi|121627957|gb|EAX60522.1| fumarate reductase flavoprotein subunit [Vibrio cholerae V52]
          Length = 176

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +     +  L  + +A+  G+   ++ K +    E +        + KIL  + + +CQ 
Sbjct: 10  LREARTKLGLKQNEVAKLVGVTAQTYLKWENGKSEPKISQAG--KLAKILKISEKELCQG 67

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                     T  ++ E+ L + P +         +         +
Sbjct: 68  EFHKQKMEPLTFIRKVEVLLRHVPHAEFLIGIQEYIDDEEGFIEML 113


>gi|21219711|ref|NP_625490.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|6468452|emb|CAB61612.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 191

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 3   SFSHKKIWE----AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             +   +       + ++ +   +T + L+   G+  ++ ++ +        R PS E +
Sbjct: 1   MTTPDDVLAGVGPRLRQVRKEREVTLAALSEATGISVSTLSRLESG-----LRRPSLELL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             I  A    + +L+  P         +        ++P +   G   +           
Sbjct: 56  LPIARAHQVPLDELVGAPPVGDPRVRARPVVRHGRTHWPLTRQAGGLQAFKVLEPQSREE 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRH 140
              P     +  +Y +  +    
Sbjct: 116 PD-PRTHEGYEWLYVLSGRLRLV 137


>gi|77464212|ref|YP_353716.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          2.4.1]
 gi|126463054|ref|YP_001044168.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          ATCC 17029]
 gi|77388630|gb|ABA79815.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides
          2.4.1]
 gi|126104718|gb|ABN77396.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides
          ATCC 17029]
          Length = 211

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S+  I + + ++ +   L+ SGL+ ++G+   + ++ +R         PS  +I +I 
Sbjct: 1  MNSNHLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGR-----PSLRTIERIS 55

Query: 63 AATNETICQLLDLPFSDGRTT 83
           A       LL++P       
Sbjct: 56 QALGVPPFWLLEMPDQHNPEH 76


>gi|326776661|ref|ZP_08235926.1| nickel-type superoxide dismutase maturation protease [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656994|gb|EGE41840.1| nickel-type superoxide dismutase maturation protease [Streptomyces
           cf. griseus XylebKG-1]
          Length = 142

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179
           PE R    G    +      +    SM+P    GD+L++     V+ GD ++++      
Sbjct: 2   PERRQVSGGGRVTRRPLRVVEVTGPSMVPTLYHGDLLLVQYGAPVSPGDVVILRHPFQQD 61

Query: 180 -IVAKVLISRRGRSIDLMSLN 199
            +V K    RR     +   N
Sbjct: 62  LLVVKRATERRPGGWWVRGDN 82


>gi|291536345|emb|CBL09457.1| Uncharacterized conserved protein, contains double-stranded
           beta-helix domain [Roseburia intestinalis M50/1]
          Length = 179

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 11/137 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +  +  ++ LT   LA ++ L     ++ +R         PS  ++  I+     
Sbjct: 2   DIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQN-----SPSIGTLLDIIQCLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIR 124
           T  +               EK+         G+            N    V +   P   
Sbjct: 57  TPAEFFTDEE---PEQIVFEKDDYFEKISEDGNKMIEWIIPNAQKNSMEPVRLTLKPGGS 113

Query: 125 SPHNGIYAIQTQDTRHK 141
           S  +  +A +      K
Sbjct: 114 SDTHLPHAGEEFGYVLK 130


>gi|257886679|ref|ZP_05666332.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,141,733]
 gi|257895254|ref|ZP_05674907.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium Com12]
 gi|257897876|ref|ZP_05677529.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium Com15]
 gi|257822733|gb|EEV49665.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,141,733]
 gi|257831819|gb|EEV58240.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium Com12]
 gi|257835788|gb|EEV60862.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium Com15]
          Length = 180

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 15/139 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56

Query: 68  TICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           T  +                D      +E    L +     +    +  +          
Sbjct: 57  TPEEFFHQEAANLQVVYSKEDHTVYFDEENGYELEWLVADSNEKEMEPVLLTFEGAGEYK 116

Query: 119 GVPEIRSPHNGIYAIQTQD 137
                 S    I+ ++ + 
Sbjct: 117 TFEPSLSE-TFIFVLEGEL 134


>gi|255513995|gb|EET90259.1| transcriptional regulator, XRE family [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 291

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 35/162 (21%), Gaps = 16/162 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-------------EGRNRWPSTE 56
            E I  + +   ++   LA++ GL   S  + +                  GR+    TE
Sbjct: 127 GELIKSLRKLSGMSREDLAKEVGLSKDSIYRYESGKSWISKKNLKKLEDYFGRSLKFDTE 186

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
               +L     +   +              +          +          F       
Sbjct: 187 EYANVLEPIGTSSKGMKFTYIRKDPFRMIGKGRKRYEIGRLANQRTMKKWSEFYRKLNEE 246

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
               P   +                    S+    +  D L+
Sbjct: 247 FDDYPFYLTERKVY---SKSINGVPVISRSIFDSLQDEDALL 285


>gi|251788781|ref|YP_003003502.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537402|gb|ACT06023.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 76

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  +  +  L+    A K GLD T  +  +R       R P+ E ++ +    +  
Sbjct: 11 LGQRVKMLRLQAGLSQEAFAEKCGLDRTYISGIERGV-----RNPTLEVLYILATGLHTD 65

Query: 69 ICQLLDLPFS 78
          +  L      
Sbjct: 66 LTTLFVFRDP 75


>gi|227892270|ref|ZP_04010075.1| XRE family transcriptional regulator [Lactobacillus salivarius
          ATCC 11741]
 gi|227865911|gb|EEJ73332.1| XRE family transcriptional regulator [Lactobacillus salivarius
          ATCC 11741]
          Length = 220

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           +KI + I +  +  N T + LA K G+   + +K +    
Sbjct: 20 QEKIGKFIAKCRKEQNFTQANLAEKLGITNQAVSKWENGKS 60


>gi|227552156|ref|ZP_03982205.1| transcriptional regulator [Enterococcus faecium TX1330]
 gi|227178738|gb|EEI59710.1| transcriptional regulator [Enterococcus faecium TX1330]
          Length = 213

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 15/139 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 35  EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 89

Query: 68  TICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           T  +                D      +E    L +     +    +  +          
Sbjct: 90  TPEEFFHQEAANLQVVYSKEDHTVYFDEENGYELEWLVADSNEKEMEPVLLTFEGAGEYK 149

Query: 119 GVPEIRSPHNGIYAIQTQD 137
                 S    I+ ++ + 
Sbjct: 150 TFEPSLSE-TFIFVLEGEL 167


>gi|149914326|ref|ZP_01902857.1| DNA binding protein, putative [Roseobacter sp. AzwK-3b]
 gi|149811845|gb|EDM71678.1| DNA binding protein, putative [Roseobacter sp. AzwK-3b]
          Length = 288

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 9/125 (7%)

Query: 1   MTSFSHKKIWEAIDRMA-----ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           M   + K++   + R+           + S LAR  G+D ++ ++  +       R P+ 
Sbjct: 1   MVEKTDKRLRADLFRLRLTTALNERGSSQSALARAVGVDRSTISQLLKGQG---ARLPNA 57

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNK 114
           + + +   A   +   LL L        +     + L   P +              G K
Sbjct: 58  QVVGECARALGVSADWLLGLTDRPETAADILATSMSLTEAPRALVDEQIFQWHKEAAGYK 117

Query: 115 WNTVG 119
              V 
Sbjct: 118 IRHVP 122


>gi|69245031|ref|ZP_00603189.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO]
 gi|257879271|ref|ZP_05658924.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,230,933]
 gi|257881911|ref|ZP_05661564.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,231,502]
 gi|257883903|ref|ZP_05663556.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,231,501]
 gi|257890099|ref|ZP_05669752.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,231,410]
 gi|257892889|ref|ZP_05672542.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,231,408]
 gi|258615672|ref|ZP_05713442.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO]
 gi|260558717|ref|ZP_05830906.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecium C68]
 gi|261208793|ref|ZP_05923230.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecium TC 6]
 gi|289566416|ref|ZP_06446843.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecium D344SRF]
 gi|293553978|ref|ZP_06674581.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1039]
 gi|293563215|ref|ZP_06677668.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1162]
 gi|293567490|ref|ZP_06678836.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1071]
 gi|293573068|ref|ZP_06684008.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E980]
 gi|294614455|ref|ZP_06694371.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1636]
 gi|294617942|ref|ZP_06697547.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1679]
 gi|294622380|ref|ZP_06701409.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           U0317]
 gi|314937335|ref|ZP_07844675.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
 gi|314940969|ref|ZP_07847872.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|314949058|ref|ZP_07852420.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|314953462|ref|ZP_07856378.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|314994151|ref|ZP_07859458.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|314995961|ref|ZP_07861041.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|68196032|gb|EAN10464.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO]
 gi|257813499|gb|EEV42257.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,230,933]
 gi|257817569|gb|EEV44897.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,231,502]
 gi|257819741|gb|EEV46889.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,231,501]
 gi|257826459|gb|EEV53085.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,231,410]
 gi|257829268|gb|EEV55875.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           faecium 1,231,408]
 gi|260075176|gb|EEW63489.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecium C68]
 gi|260077295|gb|EEW65015.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecium TC 6]
 gi|289161791|gb|EFD09664.1| helix-turn-helix domain-containing protein:Cupin region
           [Enterococcus faecium D344SRF]
 gi|291589799|gb|EFF21601.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1071]
 gi|291592763|gb|EFF24356.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1636]
 gi|291595751|gb|EFF27039.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1679]
 gi|291598140|gb|EFF29243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           U0317]
 gi|291601861|gb|EFF32110.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1039]
 gi|291604810|gb|EFF34291.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E1162]
 gi|291606861|gb|EFF36243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
           E980]
 gi|313589837|gb|EFR68682.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|313591418|gb|EFR70263.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|313594495|gb|EFR73340.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|313600201|gb|EFR79044.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|313643286|gb|EFS07866.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
 gi|313644535|gb|EFS09115.1| helix-turn-helix protein [Enterococcus faecium TX0082]
          Length = 180

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 15/139 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56

Query: 68  TICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           T  +                D      +E    L +     +    +  +          
Sbjct: 57  TPEEFFHQEAANLQVVYSKEDHTVYFDEENGYELEWLVADSNEKEMEPVLLTFEGAGEYK 116

Query: 119 GVPEIRSPHNGIYAIQTQD 137
                 S    I+ ++ + 
Sbjct: 117 TFEPSLSE-TFIFVLEGEL 134


>gi|299820914|ref|ZP_07052803.1| transcriptional regulator [Listeria grayi DSM 20601]
 gi|299817935|gb|EFI85170.1| transcriptional regulator [Listeria grayi DSM 20601]
          Length = 69

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   + ++ E   L+   LA K G+   + +  ++         PS E   K+ A   +
Sbjct: 2  KVKNNVKKLREEKELSQVELAAKMGVSRQTIHAIEKEKY-----SPSLELALKLAAFFEK 56

Query: 68 TICQLLDLPF 77
           I  +  L  
Sbjct: 57 AIEMVFYLEE 66


>gi|228952237|ref|ZP_04114326.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807365|gb|EEM53895.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 146

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E + ++ E    +   +A+K G+   +  K +         +P  +++  +    N 
Sbjct: 2   NLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYKWENDKS-----YPDIDNLILLSEMYNV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           T+ +L+       +      ++         G        +      + 
Sbjct: 57  TLDELIKGNQDFKKKIHSDAEDEDFEKGNEFGFYIGCGLLILSAFVDYE 105


>gi|297582579|ref|YP_003698359.1| XRE family transcriptional regulator [Bacillus selenitireducens
          MLS10]
 gi|297141036|gb|ADH97793.1| transcriptional regulator, XRE family [Bacillus selenitireducens
          MLS10]
          Length = 210

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I +  +  NL+ + +A + G+   + +K +          PST  + ++       
Sbjct: 3  LGTTISQRRKELNLSQAFVAEEMGVSRQAVSKWETGQSV-----PSTAHLIRLAEVLGCD 57

Query: 69 ICQLLDLPFSDGRTTEKKE 87
          +  L +           +E
Sbjct: 58 VQDLAEPDQEAQPAQPAEE 76


>gi|163803395|ref|ZP_02197270.1| LexA repressor [Vibrio sp. AND4]
 gi|159172799|gb|EDP57644.1| LexA repressor [Vibrio sp. AND4]
          Length = 99

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
              D   +    SM  +    GD+L ++    V  G  + +     D+  K L  + G S
Sbjct: 4   PKADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQVV-VARVDDDVTVKRLERK-GSS 61

Query: 193 IDLMSLNCCYPVDTVEM 209
           + L + N  +    V++
Sbjct: 62  VLLHAENEEFSPIQVDL 78


>gi|28870080|ref|NP_792699.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213966893|ref|ZP_03395043.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301381575|ref|ZP_07229993.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302061669|ref|ZP_07253210.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40]
 gi|302134354|ref|ZP_07260344.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28853326|gb|AAO56394.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213928215|gb|EEB61760.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|331015365|gb|EGH95421.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 182

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 51/202 (25%), Gaps = 40/202 (19%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L     T+
Sbjct: 4   GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58

Query: 70  CQLLDLPFSDGRTTE------------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                     G+                  + + +    PS    F      P     ++
Sbjct: 59  ADFFTFDQPPGQDQYVFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAP---GADS 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
              P + S       +              +                   GD        
Sbjct: 116 GEEPIVHSEGEECGLVTRGTVELTINGQVNILG----------------PGDGYYFPTTL 159

Query: 178 GDIVAKVLISRRGRSIDLMSLN 199
                    +      +++S N
Sbjct: 160 PH----RFRNIGQDEAEIISSN 177


>gi|39997635|ref|NP_953586.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens
          PCA]
 gi|39984527|gb|AAR35913.1| transcriptional regulator, Cro/CI family [Geobacter
          sulfurreducens PCA]
 gi|298506575|gb|ADI85298.1| helix-turn-helix transcriptional regulator PuuR, cupin
          domain-containing [Geobacter sulfurreducens KN400]
          Length = 181

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI E + R+   ++LT   LA +A L     ++ +          PS  ++  IL     
Sbjct: 2  KIGERLKRLRMINSLTQEELANRADLTKGYISQLENDAT-----SPSIATLKDILDVFGV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
          ++ +    P  +     K  +  P        
Sbjct: 57 SMQEFFSDPIGEDVVYGKDARVQPSADDAAVM 88


>gi|314933990|ref|ZP_07841355.1| toxin-antitoxin system, antitoxin component, Xre family
           [Staphylococcus caprae C87]
 gi|313654140|gb|EFS17897.1| toxin-antitoxin system, antitoxin component, Xre family
           [Staphylococcus caprae C87]
          Length = 109

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++ +I   I    +  N++ S LAR+ G+  ++ ++          R           
Sbjct: 1   MRNNDEIITIIKSAMKEQNMSLSELARRVGVAKSAVSRYLNLT-----REFPLNRTEDFA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            A + +   LL    S+ +  + K +   L         
Sbjct: 56  KALSISTEYLLGFDKSEQQDEQPKHRAAHLEGELTDEEW 94


>gi|306825566|ref|ZP_07458905.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
 gi|304431927|gb|EFM34904.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
          Length = 69

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+  +  +    I  + ++  L+   LA + G+   + +  +    +      S E+  K
Sbjct: 1  MSKQTQNR----IRELRKQSRLSQQALADQIGVFRNTISNWETGYSQ-----ISLENAKK 51

Query: 61 ILAATN 66
          +     
Sbjct: 52 VAEYFG 57


>gi|295838009|ref|ZP_06824942.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74]
 gi|295826798|gb|EFG65058.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74]
          Length = 120

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 5/98 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S     + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MVSLDVGGLGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          +  A   +   L             +     +L   P+
Sbjct: 56 LAKALRISAETLYVQAGILDERDRSEAGTRAVLLADPA 93


>gi|302870146|ref|YP_003838783.1| helix-turn-helix domain-containing protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315503577|ref|YP_004082464.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|302573005|gb|ADL49207.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
          27029]
 gi|315410196|gb|ADU08313.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 216

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I  +     ++   LA +AG+     ++ +R       R PS E + ++ +A   
Sbjct: 9  DVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERG-----LRKPSAEVLQQLASALRV 63

Query: 68 TICQLL 73
          +   + 
Sbjct: 64 STPAMY 69


>gi|257880858|ref|ZP_05660511.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|260562694|ref|ZP_05833195.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
 gi|261209352|ref|ZP_05923730.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          TC 6]
 gi|257815086|gb|EEV43844.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|260072923|gb|EEW61277.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
 gi|260076680|gb|EEW64429.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          TC 6]
          Length = 153

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          + +   +  +  +   T   +ARK  +   + +K +          P  E++ KI   
Sbjct: 2  EDLGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTT-----PDIETLKKICEF 54


>gi|253578952|ref|ZP_04856223.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849895|gb|EES77854.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 170

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  +   +N T   LA K GL P   +  ++       R P  + I K++   N +
Sbjct: 3   IESRIKDLRIENNYTQRELAAKIGLTPKMISFYEKGE-----RVPPLDIIVKLVQIFNVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
              LL L        +   +   +          +  +      +
Sbjct: 58  SDYLLGLSDKRYPDEDLGWRSPHIENRFGKILSDYRRTNDISISD 102


>gi|224477323|ref|YP_002634929.1| putative transcriptional regulator [Staphylococcus carnosus
          subsp. carnosus TM300]
 gi|222421930|emb|CAL28744.1| putative transcriptional regulator [Staphylococcus carnosus
          subsp. carnosus TM300]
          Length = 68

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  +  R     + LA+KAG+   + +  +R         PS  +  KI     E I  
Sbjct: 4  RLKELRARDGYNQTQLAKKAGISRQTVSLIERNEF-----MPSVLTAAKIARIFGERIED 58

Query: 72 LL 73
          + 
Sbjct: 59 IF 60


>gi|253988431|ref|YP_003039787.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC
          43949]
 gi|253988437|ref|YP_003039793.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC
          43949]
 gi|211638957|emb|CAR67572.1| putative phage regulatory protein [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
 gi|253779881|emb|CAQ83042.1| putative phage regulator [Photorhabdus asymbiotica]
 gi|253779887|emb|CAQ83048.1| putative phage regulator [Photorhabdus asymbiotica]
          Length = 133

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + E  NL+   LA   G+DP ++N+ ++         P  E++ KI      TI 
Sbjct: 18 ERLRLLREARNLSQVRLAELLGVDPRAYNRWEKGAS-----APHLETVIKIADVLQVTID 72

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +L+           +      L     
Sbjct: 73 ELVGRKAISDEVKIRNHTLHSLWQKAD 99


>gi|120613133|ref|YP_972811.1| putative phage repressor [Acidovorax citrulli AAC00-1]
 gi|120591597|gb|ABM35037.1| putative phage repressor [Acidovorax citrulli AAC00-1]
          Length = 234

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                               D SM P    GD++ +++        ++ +    G  + +
Sbjct: 132 HEWLERRSLRARDLIAIAVGDDSMQPSLHPGDVVAVDTRDPSPADGQVFVVDYEGACLVR 191

Query: 184 VLISRRGRSIDLMSLNC-CYPVDTVEMSDIEWIARIL 219
            ++     +  L + N   +P   +       + R++
Sbjct: 192 RVVRDS-GAWWLAAENALRFPRKQLTAPSARLVGRVV 227


>gi|69248820|ref|ZP_00604806.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|257894941|ref|ZP_05674594.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,408]
 gi|294623392|ref|ZP_06702249.1| transcriptional regulator [Enterococcus faecium U0317]
 gi|68194345|gb|EAN08856.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|257831320|gb|EEV57927.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,408]
 gi|281336179|gb|ADA62728.1| hypothetical membrane protein [Enterococcus faecium]
 gi|291597192|gb|EFF28386.1| transcriptional regulator [Enterococcus faecium U0317]
          Length = 153

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          + +   +  +  +   T   +ARK  +   + +K +          P  E++ KI   
Sbjct: 2  EDLGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTT-----PDIETLKKICEF 54


>gi|302546759|ref|ZP_07299101.1| putative helix-turn-helix domain protein [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302464377|gb|EFL27470.1| putative helix-turn-helix domain protein [Streptomyces
          himastatinicus ATCC 53653]
          Length = 101

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   + R       + + LAR+AG+   +  + +          PST ++ ++  A  +
Sbjct: 37 EIGRTVHRCRTELGWSQTELARRAGMTQPAIARLETSLT-----LPSTRTLLRVATALGQ 91

Query: 68 TIC 70
           + 
Sbjct: 92 PLH 94


>gi|192360811|ref|YP_001984256.1| Helix-turn-helix domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190686976|gb|ACE84654.1| Helix-turn-helix domain protein [Cellvibrio japonicus Ueda107]
          Length = 152

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 2/112 (1%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++  +   +   LA   GL   +  + +R    G     S  S+F++  AT E+    
Sbjct: 3   VRKLRLQRGWSQEQLAELTGLSIRTIQRIERGSKPGLETIKSLASVFEVDPATFESGADD 62

Query: 73  LDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           +             +  K I   Y        F    +F  G++   +  P 
Sbjct: 63  MSEQPLKVDEVEAMQYVKGIKEFYSHVLMYVVFTSVFLFSGGHQIEHIYWPF 114


>gi|182436037|ref|YP_001823756.1| putative signal peptidase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178464553|dbj|BAG19073.1| putative signal peptidase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 142

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD- 179
           PE R    G    +      +    SM+P    GD+L++     V+ GD ++++      
Sbjct: 2   PERRQVSGGGRVTRRPLRVVEVTGPSMVPTLYHGDLLLVQYGAPVSPGDVVILRHPFQQD 61

Query: 180 -IVAKVLISRRGRSIDLMSLN 199
            +V K    RR     +   N
Sbjct: 62  LLVVKRATERRPGGWWVRGDN 82


>gi|169823920|ref|YP_001691531.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|302379963|ref|ZP_07268442.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna ACS-171-V-Col3]
 gi|303234408|ref|ZP_07321047.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna BVS033A4]
 gi|167830725|dbj|BAG07641.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|302312189|gb|EFK94191.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna ACS-171-V-Col3]
 gi|302494524|gb|EFL54291.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna BVS033A4]
          Length = 134

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             + ++ E   LT + LA K G+   + +  +  G   R +    +   KI    N
Sbjct: 4  GSKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQ----DMYKKIAEFFN 56


>gi|167766444|ref|ZP_02438497.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1]
 gi|167711853|gb|EDS22432.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1]
          Length = 260

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S++K    +  + +  NLT   LA K  +   + +K +R         P+   +  
Sbjct: 8  MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 62

Query: 61 ILAATNETICQ 71
          I    + T+ +
Sbjct: 63 IADILDVTVTE 73


>gi|325846548|ref|ZP_08169463.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481306|gb|EGC84347.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 65

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          I ++ + + L    LA+K G+   +    +    +     PS E   KI
Sbjct: 5  IKKLRKENGLRQEDLAKKLGVSRQTIIAIENNKYD-----PSLELAIKI 48


>gi|300717762|ref|YP_003742565.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661]
 gi|299063598|emb|CAX60718.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661]
          Length = 69

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +       + +  + +  +LT   LA    L+ T  +  +        R PS  +I K
Sbjct: 1  MKTLLQVYFGKRVALLRKDKHLTQEALAEACDLNRTYLSGLETG-----KRNPSLSTISK 55

Query: 61 ILAATNETICQLL 73
          +  A    + ++ 
Sbjct: 56 LAKALGIQMKEIF 68


>gi|291540762|emb|CBL13873.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 111

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/74 (10%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  +     L+   LA K  +   +  K +    E     P+ + +  +    + ++
Sbjct: 1  MNRLKDLRREMGLSQQALADKLNVSQQTICKYENNTNE-----PNIDMLEAMADIFDVSV 55

Query: 70 CQLLDLPFSDGRTT 83
            L+       +  
Sbjct: 56 DYLIGYSSYAHKVE 69


>gi|289167024|ref|YP_003445291.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288906589|emb|CBJ21422.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 68

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          ++   +  +  R  L  + LA+ AG+   + +  +R     
Sbjct: 2  QLKNRLKELRARDGLNQTDLAKLAGVSRQTVSLLERDEYTP 42


>gi|251800099|ref|YP_003014830.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547725|gb|ACT04744.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 150

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  M +        LA K  +   S +K +         +PS E I KI      TI
Sbjct: 4   GEKLKAMRQSKGWPQDELAEKLFVSRQSVSKWENNQN-----YPSIEIIIKISDLFGVTI 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            +LL       +   K  +++       S  
Sbjct: 59  DELLRSDEELTQKVIKDSRQLAYPRLKASFD 89


>gi|148807463|gb|ABR13534.1| phage-related DNA-binding protein [Pseudomonas aeruginosa]
          Length = 400

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++     LT  GLA   G    + +K +          PS   I +    +   + 
Sbjct: 11  ERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSS--YPTAPSFHKICEFFGVSESWLL 68

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           +          +  + +   P + +  + +   +   +  +     ++  P I  P
Sbjct: 69  EKPIKSGFLRPSFFRSQVTTPKISWDVADARLDWLEEI--SYKLQESLEFPPINIP 122


>gi|197118272|ref|YP_002138699.1| transcriptional regulator with cupin-like beta-barrel domain
           [Geobacter bemidjiensis Bem]
 gi|197087632|gb|ACH38903.1| transcriptional regulator with cupin-like beta-barrel domain,
           putative [Geobacter bemidjiensis Bem]
          Length = 188

 Score = 47.1 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 64/200 (32%), Gaps = 23/200 (11%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S   I   I ++     LT   +A + G  P   ++ +   +      P   ++ KI 
Sbjct: 1   MSSEYNIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNV-----SPPIATLSKIA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP---PSGSGGFFDSGVFPTGNKWNTVG 119
              +  + Q       + R    +  +  ++           G+F   +           
Sbjct: 56  KFFDVKLAQFFSEDEDNRRFEVVRADQRTIVPRVISKEGTRQGYFYESLSFYKQNKKMDA 115

Query: 120 V---PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                  ++P    Y+   ++  +    T+        D ++ +  I +N GD L  +  
Sbjct: 116 FMVTLTEKAPEANTYSHDGEEFIYVMNGTA--------DFILEDQKITLNEGDSLYFEST 167

Query: 177 TGDIVAKVLISRRGRSIDLM 196
            G      L+S  G+ + ++
Sbjct: 168 LGH----RLLSHDGKEVRVL 183


>gi|256379559|ref|YP_003103219.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255923862|gb|ACU39373.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 155

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 1  MTSFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTE 56
          M S S +++      +    ER N +    AR+ G+   +           G    PS  
Sbjct: 1  MHSGSGEQVTTLGGRLQAAIERRNWSGREAARRLGISQQTVRNLLADQTHRGDPFRPSRA 60

Query: 57 SIFKILAATNETICQL 72
          ++ KI     E +   
Sbjct: 61 TLLKIADGLGEPVHPW 76


>gi|226325982|ref|ZP_03801500.1| hypothetical protein COPCOM_03796 [Coprococcus comes ATCC 27758]
 gi|225205524|gb|EEG87878.1| hypothetical protein COPCOM_03796 [Coprococcus comes ATCC 27758]
          Length = 219

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 61/203 (30%), Gaps = 33/203 (16%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +F+ K++ E +       NLT   L ++ G++ ++  + +  G++ + R      + + L
Sbjct: 9   TFTAKQVGERVKERRTELNLTMPELGKRIGVNKSTIQRYEADGVDPK-RTMIINGLAEAL 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS---------------------- 100
             T E +  L +    D RT  +K+ E  +  +    S                      
Sbjct: 68  LTTPEWLTGLSEDKEYDSRTLCEKDLEEHIKKYIDIVSTVVNGEPHQQLLTTFLGKMIDL 127

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
                        + + V   E        YAI++     +     M          +  
Sbjct: 128 YSVLCYHFSDAMAEVDRVAEDEGLKQSLRRYAIESGAITERVYHKEMEAPIEDMKRFL-- 185

Query: 161 SAIQVNCGDRLLIKPRTGDIVAK 183
                   D +L     G    K
Sbjct: 186 --------DGILHIYDEGRTAVK 200


>gi|229815035|ref|ZP_04445372.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM
          13280]
 gi|229809265|gb|EEP45030.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM
          13280]
          Length = 155

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          ++ + +  +  +   +   LA   G+   + +K +  G +GR    +   + +I
Sbjct: 29 QLADRLLDLRRKAGYSQEQLADLLGVSRQAISKWE--GAQGRPEVDNVVKLAQI 80


>gi|83593651|ref|YP_427403.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC
          11170]
 gi|83576565|gb|ABC23116.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC
          11170]
          Length = 474

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + R+ E   LT + LAR   + P+  N+ +R       R  +   + +I AA  
Sbjct: 9  RLQRLREERGLTQAALARTLEISPSYLNQMERNQ-----RPLTVPVLLRINAAFG 58


>gi|318059210|ref|ZP_07977933.1| hypothetical protein SSA3_14776 [Streptomyces sp. SA3_actG]
          Length = 174

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++   I  + E   L+ S LAR++GL   + +  +        R P+ E+++ +  A  
Sbjct: 7  EVGARIRELREARALSLSALARRSGLGKATLSGLEAGT-----RNPTLETLYAVTTALG 60


>gi|302520593|ref|ZP_07272935.1| predicted protein [Streptomyces sp. SPB78]
 gi|302429488|gb|EFL01304.1| predicted protein [Streptomyces sp. SPB78]
          Length = 211

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++   I  + E   L+ S LAR++GL   + +  +        R P+ E+++ +  A  
Sbjct: 44 EVGARIRELREARALSLSALARRSGLGKATLSGLEAGT-----RNPTLETLYAVTTALG 97


>gi|297158106|gb|ADI07818.1| transcriptional regulator, XRE family protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 193

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I  +I +   R  L+ S LA++AG+  ++ ++ +          PS E+++ I    
Sbjct: 18 RIAASIRKERGRAGLSLSELAKRAGIAKSTLSQLESGAGN-----PSVETLWAISVTL 70


>gi|292491070|ref|YP_003526509.1| hypothetical protein Nhal_0949 [Nitrosococcus halophilus Nc4]
 gi|291579665|gb|ADE14122.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4]
          Length = 253

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 18/44 (40%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
                + I + + R+ E    + S LAR+  + P +  + +   
Sbjct: 66  PMRLGEYIADTVKRLREEQGWSQSELARRVKVKPQNIQQLEDGT 109



 Score = 39.0 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 4/125 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E + +     N+T   LA  +G+     +K +       +      S+ K L   +E
Sbjct: 2   NLGERLKKARLEANMTQRQLAETSGVKQQMISKLEVGRASETS---DIVSLAKALGVRSE 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-TVGVPEIRSP 126
            +    +         +  ++      +  S                 + TV  P     
Sbjct: 59  WLDSGEEPMRLGEYIADTVKRLREEQGWSQSELARRVKVKPQNIQQLEDGTVKQPRYLME 118

Query: 127 HNGIY 131
              ++
Sbjct: 119 LARVF 123


>gi|256789205|ref|ZP_05527636.1| regulatory protein [Streptomyces lividans TK24]
 gi|289773098|ref|ZP_06532476.1| regulatory protein [Streptomyces lividans TK24]
 gi|289703297|gb|EFD70726.1| regulatory protein [Streptomyces lividans TK24]
          Length = 191

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 44/143 (30%), Gaps = 11/143 (7%)

Query: 3   SFSHKKIWE----AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             +   +       + ++ +   +T + L+   G+  ++ ++ +        R PS E +
Sbjct: 1   MTTPDDVLAGVGPRLRQVRKEREVTLAALSEATGISVSTLSRLESG-----LRRPSLELL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             I  A    + +L+  P         +        ++P +   G   +       +   
Sbjct: 56  LPIARAHQVPLDELVGAPPVGDPRVRARPVVRHGRTHWPLTRQAGGLQAFKVLEPQRREE 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRH 140
              P     +  +Y +  +    
Sbjct: 116 PD-PRTHEGYEWLYVLSGRLRLV 137


>gi|241763784|ref|ZP_04761831.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
 gi|241367003|gb|EER61399.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
          Length = 102

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           SH  I  ++    +   LT + LA +AGL   +  +      EG    P   ++ ++  
Sbjct: 1  MSHDLI-ASLALARKAAGLTQAQLAERAGLSRMTVQR-----TEGGELDPRFSTLAEMAR 54

Query: 64 ATNETIC 70
               + 
Sbjct: 55 VLGMDLM 61


>gi|258511714|ref|YP_003185148.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478440|gb|ACV58759.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 436

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 50/193 (25%), Gaps = 25/193 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + + + I  + +   +T S LAR  GL   +  ++ +          PS + +  I A  
Sbjct: 2   ETLGQKIRALRKARGMTQSELAR--GLATASMISQIESDRT-----MPSAQLLAHIAARL 54

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              + +                +   L                      + ++  P    
Sbjct: 55  GVDVSEFQRELAGSSEEAHTYRRAKQLAEQGHYEEAIRH----------FLSLSWPLHSQ 104

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVAK 183
               +      D   K  D       R  D L+         GD   ++     G +  +
Sbjct: 105 FRPELVFQDMGDCYLKVGD--YEQAARLYDALVF---AGFARGDMSSVVRGYYYGALARR 159

Query: 184 VLISRRGRSIDLM 196
            L       + L 
Sbjct: 160 RLQRDEEAILYLQ 172


>gi|154500872|ref|ZP_02038910.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC
           29799]
 gi|150270372|gb|EDM97698.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC
           29799]
          Length = 157

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/156 (5%), Positives = 36/156 (23%), Gaps = 3/156 (1%)

Query: 3   SFSHKK---IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
               +    +  ++    ++  L+   +A K G+   + +K +        R     ++ 
Sbjct: 2   MLQEENAMSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAML 61

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
             +           +        +  +E +  + +           +    T    +   
Sbjct: 62  YNMTLDELIEYDFDEQQAQQMIESVSEEAQARIDWNKVWSKKYPVLATYHRTVRIDDYAP 121

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
                     +                +  +++   
Sbjct: 122 TLREMLTQLRVDYGYNNTDALLVLKDILARVWKGQM 157


>gi|332830065|gb|EGK02693.1| hypothetical protein HMPREF9455_00943 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 216

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 15/197 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           W+ + ++ E  NL+ +  A   GL  + +  + K+             SI K LA    T
Sbjct: 5   WDRLVKVIESTNLSINKFATSIGLKRSENLYRIKKGKN----------SISKDLAEQITT 54

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               +   +           E        S     F   +    +    + +PE      
Sbjct: 55  KYCNISKAWLLTGEGTMYINESEENRKSSSKKKIPFYDSIIMDSDAQTEITLPEPLYYIE 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLIS 187
                            SM P    G I+ L    + +     + +         K L +
Sbjct: 115 VPSLANCDLAALFV-GESMKPEIPSGSIVALKEINLHLILPGEMYLIVTDKYTTIKYLRT 173

Query: 188 RRGR--SIDLMSLNCCY 202
                  + L+  N  Y
Sbjct: 174 VNENNALLRLIPRNTEY 190


>gi|326774009|ref|ZP_08233291.1| transcriptional regulator [Actinomyces viscosus C505]
 gi|326636148|gb|EGE37052.1| transcriptional regulator [Actinomyces viscosus C505]
          Length = 146

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 2/138 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  + ++H  T   LA K G+   +  K +     G     S   +  +   + + 
Sbjct: 2   INSNIATLRKKHRWTQEALANKVGVSRQTIAKWE--APGGNPDISSCVRLAHVFDVSIDD 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +        +      K      ++      +       VF        + + +I     
Sbjct: 60  LVNGDTSFVAMLDRPGKYIFGTVVIDQDGRLTLPVRARQVFNIKAGDELLLIGDIDRGLA 119

Query: 129 GIYAIQTQDTRHKTQDTS 146
            +Y           +   
Sbjct: 120 LMYTQFFVQAARHVEGDH 137


>gi|296162693|ref|ZP_06845479.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295887081|gb|EFG66913.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 113

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +  + ++  LT   LA   GL  T   + +    +     PS E+I KI      T
Sbjct: 3  IAARLATLRKQKGLTQQALADAIGLHITQIKRYEAGTSQ-----PSLEAIKKIARTLRVT 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
             L+          +   +   +
Sbjct: 58 TDSLIFEEEELEPDADLAMQFQAI 81


>gi|269127822|ref|YP_003301192.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268312780|gb|ACY99154.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 99

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          ++ EA+    E   LT + LA +AGL   +  + +  G       P  E + + L  
Sbjct: 32 QLGEAVRLRREELGLTQAQLAERAGLKQPAVARFEAGGTMPTI--PMLERLAEALEM 86


>gi|220909656|ref|YP_002484967.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219866267|gb|ACL46606.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
          Length = 239

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 19/43 (44%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           +  + +R  LT S  A   G+   + ++ ++   + + R+   
Sbjct: 169 LQTLRQRLGLTQSQFAATLGVTLMTISRWEKGRGKPKRRFMPL 211



 Score = 41.3 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I  + +R   T    A++ G+   +    ++   +  +R  S  S+ +++    
Sbjct: 16 ILTLRQRTGWTKEEFAQRLGVSLQTIINWEQGKCQPMSR--SILSLQQLMQELE 67



 Score = 37.0 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 3/97 (3%)

Query: 2   TSFSHK-KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
            +   +  +   I  +  R  L+    A   G+   +    ++   +   R      I +
Sbjct: 80  ATLGQEPSLAHLILTLRHRMGLSQVEFAALLGVTFKTVISWEKERCQPNPRL--MAQIER 137

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           ++    +    LL L F       +      L     
Sbjct: 138 LVQQLGDRGTDLLQLYFPHPTVPTEPSTARLLQTLRQ 174


>gi|313202884|ref|YP_004041541.1| peptidase s24/s26a/s26b, conserved region [Paludibacter
           propionicigenes WB4]
 gi|312442200|gb|ADQ78556.1| Peptidase S24/S26A/S26B, conserved region [Paludibacter
           propionicigenes WB4]
          Length = 258

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 29/213 (13%)

Query: 26  GLARKAGLDPTSFNKSKRFGI-----------EGRNRWPSTESIFKILAATNETICQLLD 74
            LA+   + P   +     G            +    W  +     +L +        + 
Sbjct: 20  ELAKFLEITPQILSNWDSRGTFDLHKIYTKCVDVSPDWILSNGQGNMLRSNYTQNENEVR 79

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
                    +   K   +     +      D   F   N ++ + +P+   P N  Y   
Sbjct: 80  KINLSKPNNDLNIKIHIVDTSVITKVSDQLDEINF---NVFDCIVLPKTALPDNYKYL-- 134

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVN----CGDRLLIKPRTG-DIVAKVLI-SR 188
                      SMLP     D +++    +        + + +          K +    
Sbjct: 135 ----CINMSGNSMLPTLYDKDKIVVRLLKKSEWYEMPNEHVYVVVDKNKKTYIKRVRNKL 190

Query: 189 RGRSIDLMSLNCC---YPVDTVEMSDIEWIARI 218
               I   S N     YP   +  SDI  I  +
Sbjct: 191 NNGFIVCTSDNLDKMNYPCFNIAESDIMSIWHV 223


>gi|257483709|ref|ZP_05637750.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331012135|gb|EGH92191.1| ultraviolet light resistance protein A [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 131

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 8/103 (7%)

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
           P                    Y         +    SM  +     D++ ++ +++    
Sbjct: 30  PAAAHIEQDFSSGRLMDVRAPY-----IYVAQIDSDSMRGIGIFDADLIAVDRSLKAGHK 84

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
             ++     G+ + K L  +    + L S N  Y    +   +
Sbjct: 85  SIVIAAVN-GEPMCKRLCIKGDD-VSLQSENPSYAAKYILKGE 125


>gi|269122272|ref|YP_003310449.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC
           33386]
 gi|268616150|gb|ACZ10518.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC
           33386]
          Length = 180

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 7/134 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E +  + +   LT + LA +  L     ++ +R         PS  ++  IL     
Sbjct: 2   KIGEKLKSLRQEKLLTQNELADRCELSKGFISQLERDLT-----SPSLSTLEDILEVLGT 56

Query: 68  TICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            I    +    +    + +   E               ++          T+  P  R  
Sbjct: 57  NIRDFFNETQQEKIVFSVEDFYEFQNEELGYEIKWIIPNAQKNKMEPILITLE-PGGRYK 115

Query: 127 HNGIYAIQTQDTRH 140
               +  +      
Sbjct: 116 LEVAHEGEEFGYVL 129


>gi|229825438|ref|ZP_04451507.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC
           49176]
 gi|229790001|gb|EEP26115.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC
           49176]
          Length = 116

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 2/100 (2%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + ++ ++  LT   LA   GL PT+ +  +    E    +    ++ K    T + +  
Sbjct: 6   RLKQLRQKKGLTQGELANILGLKPTAISNYESNRNE--PSFDKLIALSKEFDVTCDYLLG 63

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           + D     G     KE     L +             +  
Sbjct: 64  ISDSALPIGGEILDKEIVDFFLVYQQLMPESAASVRDYAE 103


>gi|198276387|ref|ZP_03208918.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135]
 gi|198270829|gb|EDY95099.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135]
          Length = 120

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            E +    +   +T   LA + G + T  N+ +R   +         S  +I  A  
Sbjct: 59  GEILRERRKELGMTQKELAERVGRERTYINRIERGETD-----LQLSSFIRIAEALG 110


>gi|331092206|ref|ZP_08341036.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401978|gb|EGG81552.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 347

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI E I +  +   +T   +A   G+   + NK +          P    +  I      
Sbjct: 2  KIGEVIRKYRKEKQMTQEEMAEYLGVTTPAVNKWENGNS-----MPDISLLAPIARLLGI 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|325831430|ref|ZP_08164684.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325486684|gb|EGC89132.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 205

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           E +  +     LT   LA +  +  T+ +K +  G  G     S +++ ++  
Sbjct: 4  GEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGG--GSPNLDSLQAVARLFD 55


>gi|317490559|ref|ZP_07949035.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA]
 gi|316910339|gb|EFV31972.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA]
          Length = 205

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           E +  +     LT   LA +  +  T+ +K +  G  G     S +++ ++  
Sbjct: 4  GEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGG--GSPNLDSLQAVARLFD 55


>gi|300917191|ref|ZP_07133875.1| helix-turn-helix protein [Escherichia coli MS 115-1]
 gi|300415568|gb|EFJ98878.1| helix-turn-helix protein [Escherichia coli MS 115-1]
          Length = 178

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 40/160 (25%), Gaps = 11/160 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ ++   + S LA    +      + +R         P+  +++KI    N      
Sbjct: 12  LKQLRQQRGWSLSRLAEATRVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSTF 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV---FPTGNKWNTVGVPEIRSPHNG 129
           +  P S   +    +++  ++                     G    +    +    H  
Sbjct: 67  ISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMAPGAISESTPHEKGVIEHVV 126

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +   Q                  +G     +       G 
Sbjct: 127 VIDGQLD---LCVDGEWQSLNCGEGVRFAADVTHVYRNGG 163


>gi|298694333|gb|ADI97555.1| probable transcriptional regulator [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 179

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 51/179 (28%), Gaps = 30/179 (16%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +    NLT   LA +  L     ++ +          PS E+   I+     
Sbjct: 2   NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126
           T  +      ++    +K+E+ I   Y       G+  + +    N+++   +     P 
Sbjct: 57  TPSEFFKDSENEKVLYKKEEQVIYDEYDE-----GYILNWLVSKSNEYDMEPLILTLKPG 111

Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
             +      ++    +                      I +N G  +        +  K
Sbjct: 112 ASYKNFNPSESDTFIYCMSG-----------------QITLNLGKEIYQAQEEDVLYFK 153


>gi|226312429|ref|YP_002772323.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226095377|dbj|BAH43819.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 466

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 3/112 (2%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ +   I++       T S L    G++P + ++          R  +   +  +    
Sbjct: 9   HQSLRSEIEQHRRARGYTLSKLGDLTGINPGTLSEILNGKP---PRAITISQLDALAEVF 65

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                 + +L   +     K  +   + Y   S   G  D            
Sbjct: 66  GYEPGWMYELYPDECLYEGKISRPRLIPYLIRSAENGRKDCIEAVASQLLEN 117


>gi|22536979|ref|NP_687830.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|76787451|ref|YP_329560.1| DNA-binding protein [Streptococcus agalactiae A909]
 gi|76799305|ref|ZP_00781471.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae 18RS21]
 gi|77405543|ref|ZP_00782634.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae H36B]
 gi|77410671|ref|ZP_00787030.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae CJB111]
 gi|22533834|gb|AAM99702.1|AE014229_3 transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 2603V/R]
 gi|76562508|gb|ABA45092.1| DNA-binding protein [Streptococcus agalactiae A909]
 gi|76585348|gb|EAO61940.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae 18RS21]
 gi|77163207|gb|EAO74159.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae CJB111]
 gi|77175850|gb|EAO78628.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae H36B]
          Length = 71

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +  R  +  + LA+  G+   + +  +R         PS     KI     E+
Sbjct: 5  LKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYT-----PSVIIAMKISQVFKES 59


>gi|298385377|ref|ZP_06994935.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
 gi|298261518|gb|EFI04384.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
          Length = 103

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I EAI +  +  N+T   LA+K G+     +K +        R  +  ++ ++  A    
Sbjct: 37 IGEAIKKARKSQNMTQEELAQKIGVQRAQVSKIESG------RNLTLSTVARVFRAMGME 90


>gi|255024118|ref|ZP_05296104.1| transcription regulator, putative [Listeria monocytogenes FSL
          J1-208]
          Length = 110

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +R         PS E++F IL     
Sbjct: 2  EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIETLFAILEVLGS 56

Query: 68 TICQLLDLPFSDGRTTEKKEKE 89
          T     D    + +    + + 
Sbjct: 57 TPKDFFDEEEHNQKVIYGELEH 78


>gi|228478091|ref|ZP_04062702.1| transcriptional regulator, xre family [Streptococcus salivarius
           SK126]
 gi|228250271|gb|EEK09524.1| transcriptional regulator, xre family [Streptococcus salivarius
           SK126]
          Length = 169

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 12/167 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1   MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    N T  QL              E                +      T    +   +
Sbjct: 55  IAEYFNATPTQLFGTSKEIELEKSVLESNEYSDKVSEILKAVKYIEHFLQT----DGQYL 110

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI--LILNSAIQV 165
            ++     G               TS    +        I+      
Sbjct: 111 EDLLYLTRGNQLYTEDGDELYIDPTSQKRTFHNQYEPGFIVARDKSP 157


>gi|322388557|ref|ZP_08062158.1| XRE family transcriptional regulator [Streptococcus infantis ATCC
          700779]
 gi|321140596|gb|EFX36100.1| XRE family transcriptional regulator [Streptococcus infantis ATCC
          700779]
          Length = 67

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    +
Sbjct: 2  LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIIIALKIAQIFH 54


>gi|297626284|ref|YP_003688047.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate
          transferase) [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
 gi|296922049|emb|CBL56613.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate
          transferase) [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
          Length = 511

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 1  MT-SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          MT   +  +I   I    ++  +T + LA +     ++ ++ +           S E+I 
Sbjct: 1  MTQETTPARIGRLIRDARKQRGMTQNQLAEELSTSQSAIHRIESGHQN-----LSLETIN 55

Query: 60 KILAATN 66
          +I  A  
Sbjct: 56 RIAGALE 62


>gi|264680621|ref|YP_003280531.1| hypothetical protein CtCNB1_4489 [Comamonas testosteroni CNB-2]
 gi|262211137|gb|ACY35235.1| hypothetical protein CtCNB1_4489 [Comamonas testosteroni CNB-2]
          Length = 104

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +H  + E I    +   L+   LA+ A +  ++ ++ +     G  R    +++ ++  
Sbjct: 1  MTH--LGERIRARRQALGLSQGRLAQMADVTASAISQIE----SGAIRTLKNDTLARLAI 54

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKE 89
          A   T  +L+    S+  +    E+ 
Sbjct: 55 ALQTTALELMAGLHSETASLPSDEQR 80


>gi|257879453|ref|ZP_05659106.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|257813681|gb|EEV42439.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|295100939|emb|CBK98484.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii L2-6]
          Length = 101

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           + I  + + H LT   LA + G+   +  + +    
Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNR 75


>gi|227509610|ref|ZP_03939659.1| helix-turn-helix XRE-family transcriptional regulator
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190972|gb|EEI71039.1| helix-turn-helix XRE-family transcriptional regulator
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 125

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 8/120 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT     +  + + +    +NL+   LA+K  +   + +K ++         P   ++ K
Sbjct: 1   MTML---QFSKQLKKYRAANNLSQDDLAKKLFVSRQAISKWEQGDAT-----PDLNNLVK 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    N ++  L+        T ++ +              G  +   F     W    +
Sbjct: 53  LAEIFNISLDTLVLGASETKSTVDQNQYTFDPTSGLYKRRYGQMNFWDFLARFWWLIFPI 112


>gi|239814566|ref|YP_002943476.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801143|gb|ACS18210.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 262

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 19/43 (44%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
           +         +    +R   T + LA ++G+  T+ ++++R 
Sbjct: 36 PTLDRTTFGHRLRAARKRFGWTLAQLAERSGVSITTISRAERG 78


>gi|170692929|ref|ZP_02884090.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M]
 gi|170141927|gb|EDT10094.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M]
          Length = 217

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 61/200 (30%), Gaps = 31/200 (15%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-------------- 47
            S  HK +   + +  +   LT + L+ ++G+  ++ +K++R  I               
Sbjct: 20  PSLDHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 79

Query: 48  -------GRNRWPSTESIFKILAATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSG 99
                  GR R P+  ++     A  +                    ++ +P+     + 
Sbjct: 80  LEFDAIFGRRRKPAAGAMKPSFTAAGKQQVYDTPNYEYGMLANNLTGKRMMPMRAHIHAR 139

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
           +   F   +  +G          + S    +     +  R      S+   Y    +  +
Sbjct: 140 AVADFPEYIRHSGE-----EFVFLLSGKLELRFENGKSFRL-MPGDSL---YFDSSVGHI 190

Query: 160 NSAIQVNCGDRLLIKPRTGD 179
             ++     D L+    T +
Sbjct: 191 YVSVGEEDADALVCCVDTDE 210


>gi|304321631|ref|YP_003855274.1| XRE family transcriptional regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303300533|gb|ADM10132.1| transcriptional regulator, XRE family protein [Parvularcula
           bermudensis HTCC2503]
          Length = 226

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 3/128 (2%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I + I    +R  L    L R+ G+   +    +    +   R      +   L  T 
Sbjct: 17  DTIGQRIKAARKRCRLNQENLGRELGVSQPTVANWEADIHQ--PRPFMLGKLADRLEVTV 74

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRS 125
             +    +                PL + P   +               ++ +    + S
Sbjct: 75  GWLAGGDEGGSVSVDHPMASYLRRPLRHVPIYNARPLAGLQSLVNLEATFDPIEFLPVSS 134

Query: 126 PHNGIYAI 133
             +G+ A+
Sbjct: 135 EADGLVAL 142


>gi|158317899|ref|YP_001510407.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113304|gb|ABW15501.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
          Length = 277

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +   + + + I        ++   LAR+AG+     ++ +R       R PS E + +
Sbjct: 1  MAAIHVRDVGDFIREQRRGAQISLRQLARQAGVSNPYLSQIERG-----LRRPSAEILQQ 55

Query: 61 ILAATNET 68
          I  A   +
Sbjct: 56 IAKALRIS 63


>gi|312887464|ref|ZP_07747063.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM
           18603]
 gi|311300104|gb|EFQ77174.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM
           18603]
          Length = 262

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 18/164 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S KKI E I  +    + + + +A    +  +++++ +        ++PS ES+ KI +
Sbjct: 5   LSKKKIGERIRSVRLERHYSQAFVASILNISRSNYSQIEIGN-----QFPSFESLSKIAS 59

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             +++   LL    +D            +     +               ++      E 
Sbjct: 60  YYSKSYEWLLHGQEADPYVENSARSSQEI----QAEKKVPSKILYVTESAEYARNLKSES 115

Query: 124 RSPHNGIYAIQT---------QDTRHKTQDTSMLPLYRKGDILI 158
              H  ++ +           +     +   +ML     GD+LI
Sbjct: 116 YLKHLPVFDLPGSFIVDHARYRAFTIDSSGNNMLKYINTGDLLI 159


>gi|311279701|ref|YP_003941932.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
           SCF1]
 gi|308748896|gb|ADO48648.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 180

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++   + S LA + G+      + +R         P+  +++KI    N      
Sbjct: 11  LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLNVPFSLF 65

Query: 73  LDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  P S+    + +++ + +  L+   +       S +   G    +         H
Sbjct: 66  ITPPESEAAAYDPQQQAMVVTPLFPWDAELRFDHFSIMLAPGALSESAPHEAGVIEH 122


>gi|307545860|ref|YP_003898339.1| XRE family transcriptional regulator [Halomonas elongata DSM
          2581]
 gi|307217884|emb|CBV43154.1| transcriptional regulator, XRE family [Halomonas elongata DSM
          2581]
          Length = 179

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S   + + +  +      + S LA  AG+  ++ ++ ++         P+ ++I++
Sbjct: 4  MDKLSLSTLGQHLQTLRRARGWSLSQLATAAGIAKSNLSRLEQGDGN-----PTLDTIWR 58

Query: 61 ILAATNETI 69
          +    N   
Sbjct: 59 LAVQLNVPF 67


>gi|255528296|ref|ZP_05395109.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|255508014|gb|EET84441.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
          Length = 71

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +   LT + LA K GL  +  ++ +R  I+     PS  S+ KI  +    
Sbjct: 2  LGPKIREIRQEKGLTLNELADKTGLTASYLSQIERNIID-----PSLSSLRKISLSLEVP 56

Query: 69 ICQL 72
          I   
Sbjct: 57 IYTF 60


>gi|330470351|ref|YP_004408094.1| helix-turn-helix domain-containing protein [Verrucosispora maris
          AB-18-032]
 gi|328813322|gb|AEB47494.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032]
          Length = 226

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I  +     ++   LA +AG+     ++ +R       R PS E + ++ +A   
Sbjct: 9  DVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERG-----LRRPSAEVLQQLASALRV 63

Query: 68 TICQLL 73
          +   + 
Sbjct: 64 STPAMY 69


>gi|330468037|ref|YP_004405780.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328811008|gb|AEB45180.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 192

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  + +    T S LA   G+  ++ ++ +        R P+ E +  +  A    
Sbjct: 11 VGPRLRALRKNRGTTLSELADTTGISVSTLSRLESGQ-----RRPTLELLLPLARAHQVP 65

Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91
          + +L+  P         +     
Sbjct: 66 LDELVGAPAVGDPRVHPRPIVRH 88


>gi|307711152|ref|ZP_07647574.1| putative transcriptional regulator [Streptococcus mitis SK321]
 gi|307617114|gb|EFN96292.1| putative transcriptional regulator [Streptococcus mitis SK321]
          Length = 149

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/139 (8%), Positives = 33/139 (23%), Gaps = 12/139 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + +   L+   LA   G+   +    +    + +      E   ++      ++
Sbjct: 1   MNRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKP-----EKAKQLADYFGVSV 55

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LL+   S     +                            + ++     E    H  
Sbjct: 56  GYLLNYTNSKKDPFDGYIPTPREYRSWQEFDYMQLSKTDL---DFYDY----EKLRKHLE 108

Query: 130 IYAIQTQDTRHKTQDTSML 148
            +A++         D    
Sbjct: 109 PFALELMLNYFFCTDDERE 127


>gi|291543337|emb|CBL16446.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Ruminococcus sp. 18P13]
          Length = 110

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I + I     +  L+   LA  AG  PT   + +R          + ES+ KI +A +
Sbjct: 6  KIIGQRIRNYRTQKGLSQEKLAELAGCHPTYIGQLERGEKNA-----TLESVEKIASAMD 60

Query: 67 ETICQ 71
           ++ +
Sbjct: 61 ISLSE 65


>gi|293364648|ref|ZP_06611369.1| xre family toxin-antitoxin system [Streptococcus oralis ATCC
          35037]
 gi|307702906|ref|ZP_07639854.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
 gi|291316906|gb|EFE57338.1| xre family toxin-antitoxin system [Streptococcus oralis ATCC
          35037]
 gi|307623586|gb|EFO02575.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
          Length = 67

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    +
Sbjct: 2  LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIVIALKIAQIFH 54


>gi|154504585|ref|ZP_02041323.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC
          29149]
 gi|260590057|ref|ZP_05855970.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|153795067|gb|EDN77487.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC
          29149]
 gi|260539569|gb|EEX20138.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
          Length = 65

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E I +  +   ++ S LA +  +     ++ +          P+ E   KI    N 
Sbjct: 2  NLGENIRKARKAAGVSQSELAERLQVHQKDISRWENGA-----HAPTIEMFAKICRELNA 56

Query: 68 TICQ 71
          +  +
Sbjct: 57 SADE 60


>gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC
          29799]
 gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC
          29799]
          Length = 360

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 5/86 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   LT   LA   G+   + +K +          P    + ++      +
Sbjct: 5  LAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCV-----PDVSLMMELAEFFETS 59

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY 94
          +  LL          ++ E+   L  
Sbjct: 60 VDVLLGYEQQSMALEDRLERLKNLRM 85


>gi|307130525|ref|YP_003882541.1| MunI regulatory protein [Dickeya dadantii 3937]
 gi|306528054|gb|ADM97984.1| MunI regulatory protein [Dickeya dadantii 3937]
          Length = 102

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  + +  +  +  L+    A K GLD T  +  +R       R P+ E I  I     
Sbjct: 40 RFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGV-----RNPTLEVIGVIADRLE 93


>gi|304395940|ref|ZP_07377822.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304356309|gb|EFM20674.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 82

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  + +R+  T S LA+K GL   + +  +           S  ++FK+L A   
Sbjct: 7  QLANQLKFIRQRNGWTQSELAKKVGLKQATISHFENA-----PDSTSLATLFKLLQALEV 61

Query: 68 T 68
          +
Sbjct: 62 S 62


>gi|254883834|ref|ZP_05256544.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641491|ref|ZP_07996181.1| hypothetical protein HMPREF9011_01778 [Bacteroides sp. 3_1_40A]
 gi|254836627|gb|EET16936.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386892|gb|EFV67781.1| hypothetical protein HMPREF9011_01778 [Bacteroides sp. 3_1_40A]
          Length = 789

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 29/182 (15%)

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            +S+ K LAA  E   + +     +    ++ +    L  +    + G+F  G     + 
Sbjct: 606 DKSLAKYLAAQLEPQHESIPKLRIEPEINDEVKYIDFLPLYSIRAACGYFGEGELVDESG 665

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL-- 171
           W  V           +  +       +    SM PL   GD  +  +       G  +  
Sbjct: 666 WMKVE---------SMGKLNRNMFIVQAVGHSMEPLIHDGDYCVFRANPAGSRQGKIILA 716

Query: 172 -----LIKPRTGDIVAKVLISRRG---------RSIDLMSLNCCYPVDTVE---MSDIEW 214
                      G    K+  S++            I L+  N  Y    +E     +   
Sbjct: 717 EHHNYYDPDYAGSYSIKIYTSKKSFDEEGNWAHEEILLLPKNSIYSPIVIEEENADEFRI 776

Query: 215 IA 216
           + 
Sbjct: 777 VG 778


>gi|300362045|ref|ZP_07058222.1| bacteriophage transcriptional regulator [Lactobacillus gasseri
           JV-V03]
 gi|300354664|gb|EFJ70535.1| bacteriophage transcriptional regulator [Lactobacillus gasseri
           JV-V03]
          Length = 115

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I  +    +LT   LA+   + PT+ +  +    E     PS +++  +    N 
Sbjct: 2   NIAQRIKDLRLSKHLTQKELAQLLNVKPTTISGWELGRNE-----PSIDTLKDLAHIFNV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           ++  +     +  +  +  + E   +     G     +    
Sbjct: 57  SVDYMAGDTENQNKDKKSIDLEKDPVVLSYGGRPVSDEDMEV 98


>gi|222151038|ref|YP_002560192.1| type-1 signal peptidase 1B [Macrococcus caseolyticus JCSC5402]
 gi|222120161|dbj|BAH17496.1| type-1 signal peptidase 1B [Macrococcus caseolyticus JCSC5402]
          Length = 194

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHK-TQDTSMLPLYRKGDILILNS----AIQVNCGDRLLI 173
            +  I       Y + T           SM P ++  + +I+N        ++ GD ++ 
Sbjct: 8   WIISILVALVVFYIVHTFLFATYAVNGDSMFPTFKDKERVIINKISTKTDSIDRGDIIVF 67

Query: 174 KPRTGDIVAKVLISRRGRSID 194
              T +   K LI + G +++
Sbjct: 68  HTDTKNDYIKRLIGKPGDTVE 88


>gi|253700937|ref|YP_003022126.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251775787|gb|ACT18368.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 188

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 23/200 (11%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S   I   I ++     LT   +A + G  P   ++ +   +      P   ++ KI 
Sbjct: 1   MSSEYNIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNV-----SPPIATLSKIA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP---PSGSGGFFDSGVFPTGNKWNTVG 119
              +  + Q       + +    +  +  ++           G+F   +           
Sbjct: 56  KFFDVKLAQFFSEDEDNRKFEVVRADQRTIVPRVISKEGTRQGYFYESLSFYKQNKKMDA 115

Query: 120 V---PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                  ++P    Y+   ++  +    T+        D ++ +  I +N GD L  +  
Sbjct: 116 FMVTLTEKAPEANTYSHDGEEFIYVMNGTA--------DFILEDQKITLNEGDSLYFEST 167

Query: 177 TGDIVAKVLISRRGRSIDLM 196
            G      L+S  G+ + ++
Sbjct: 168 LGH----RLLSHDGKEVRVL 183


>gi|86739621|ref|YP_480021.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566483|gb|ABD10292.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 121

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 5/124 (4%)

Query: 1   MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M+   H++ + + I R      L+   LAR+ G+ P++ ++ +          P+ E + 
Sbjct: 1   MSEAGHREPLGQRIRRARLDRQLSGVQLARRVGVHPSNISRIENGDTT----SPTAELLQ 56

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +I  A      +LL                     +P        ++    T        
Sbjct: 57  RIAHALELDQAELLVYLGLTVPRAIPPLHAYLRATYPGLPDEAIQEAEDAVTRIAERYEA 116

Query: 120 VPEI 123
            P  
Sbjct: 117 GPRE 120


>gi|320528113|ref|ZP_08029278.1| helix-turn-helix protein [Solobacterium moorei F0204]
 gi|320131461|gb|EFW24026.1| helix-turn-helix protein [Solobacterium moorei F0204]
          Length = 176

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          KI + +  + +   +T   LA + G+   + ++ +          P  + + ++   
Sbjct: 5  KIGKLLQTLRKEKGITQEQLAEQVGVTRRTVSRWETGSN-----MPDLDVLIELSDF 56


>gi|317047445|ref|YP_004115093.1| XRE family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949062|gb|ADU68537.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 187

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 46/166 (27%), Gaps = 10/166 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58
           +  ++   +  +  +   +   L+   G+   + ++ +R          +        ++
Sbjct: 6   TEDRLAARLAELRLQRGWSLDELSMATGISRATLSRIERAETSPTAALLNRLCVAYGLTM 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            ++L+   +    LL          E    +   +  P +        GV   G++ +  
Sbjct: 66  SRLLSEVEDEAPLLLKPEQQPVWVDELSGFQRRNVSPPATHFRAEMVEGVLQPGSRIDYD 125

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
             P      +                 +     + GD L  +   +
Sbjct: 126 APPIQGLEQHIWLQSGE----LTISMEAQSWTLQAGDCLRFHLTGK 167


>gi|237735295|ref|ZP_04565776.1| predicted protein [Mollicutes bacterium D7]
 gi|229381040|gb|EEO31131.1| predicted protein [Coprobacillus sp. D7]
          Length = 70

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  +  + N++   LA + GL     +  +R       R  S +SI KI       +
Sbjct: 9  GHRIKELRLKQNISQEELAFRCGLSKNYISDVERGT-----RNVSLKSIEKIANGFAVNL 63

Query: 70 CQLLDLP 76
           +L D  
Sbjct: 64 KELFDFK 70


>gi|229544959|ref|ZP_04433684.1| transcriptional regulator [Enterococcus faecalis TX1322]
 gi|307287527|ref|ZP_07567570.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|229309851|gb|EEN75838.1| transcriptional regulator [Enterococcus faecalis TX1322]
 gi|306501265|gb|EFM70568.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|315164925|gb|EFU08942.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
          Length = 180

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T  Q       + +    +E+             G+    + P  N+     V      +
Sbjct: 57  TPEQFFSQQPLEQKIVYNEEESTLYY----DEEHGYELKWLIPASNEKEMEPVIITFDKN 112

Query: 128 NGI 130
              
Sbjct: 113 GEY 115


>gi|134298751|ref|YP_001112247.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051451|gb|ABO49422.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 218

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I ++     L+ + L+R++G+  +  +  +        R P+ + I +I +    
Sbjct: 2  DIGSRIKKLRTYQGLSMNELSRRSGVAQSHLSYVESGQ-----RQPTFDVIERICSGLGL 56

Query: 68 TICQLLDLPFSDGR 81
          ++ +  +  F    
Sbjct: 57 SVAEFFNEGFMPSP 70


>gi|325697795|gb|EGD39679.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK160]
 gi|327466976|gb|EGF12490.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK330]
          Length = 170

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 41/167 (24%), Gaps = 12/167 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1   MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    N T  QL              E                +      T    +   +
Sbjct: 55  IAEYFNATPTQLFGTSKEIELEKSVLESNEYSDKVSEILKAVKYIEHFLHT----DGQYL 110

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI--LILNSAIQV 165
            ++     G               TS             I+      
Sbjct: 111 EDLLYLTRGNQLYTEDGDELYIDPTSQKRTLHNQYEPGFIVARDKSP 157


>gi|325847281|ref|ZP_08169999.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325480912|gb|EGC83961.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 167

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I    +  NLT   LA++  +   + +K ++   E     PS +++ K+       
Sbjct: 2  IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSE-----PSMDNLVKLSEIFGVD 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93
          I    +    +  +   K     L 
Sbjct: 57 IKYFKNNDEKENDSFISKIFWDFLY 81


>gi|315037492|ref|YP_004031060.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112]
 gi|325955952|ref|YP_004286562.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
 gi|312275625|gb|ADQ58265.1| putative transcriptional regulator [Lactobacillus amylovorus GRL
          1112]
 gi|325332517|gb|ADZ06425.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
          Length = 169

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K+ + I  + ++  L+   LA K  +   + +K +          P  E I  +     
Sbjct: 2  KLGQKIAELRKKSGLSQEALAEKMNVSRQAVSKWESNQSI-----PDIEKIVDLSELFG 55


>gi|291532130|emb|CBK97715.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 106

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           E + ++     +T   LA +  +   + +  +        R PS E+I KI     
Sbjct: 5  GERVKQLRLSAGMTQEQLAERIWVTKAAISNYE-----LSERNPSPETIIKIAGVFG 56


>gi|289549667|ref|YP_003470571.1| Transcriptional regulator, Cro/CI family [Staphylococcus
          lugdunensis HKU09-01]
 gi|315659694|ref|ZP_07912555.1| transcriptional regulator [Staphylococcus lugdunensis M23590]
 gi|289179199|gb|ADC86444.1| Transcriptional regulator, Cro/CI family [Staphylococcus
          lugdunensis HKU09-01]
 gi|315495427|gb|EFU83761.1| transcriptional regulator [Staphylococcus lugdunensis M23590]
          Length = 67

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R     + LA+KAG+   + +  +R         PS  +  KI     E++ 
Sbjct: 3  NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAMKIARIFGESVE 57

Query: 71 QLLDLPF 77
           +  +  
Sbjct: 58 DVFIIEE 64


>gi|197106670|ref|YP_002132047.1| predicted transcriptional regulator [Phenylobacterium zucineum
           HLK1]
 gi|196480090|gb|ACG79618.1| predicted transcriptional regulator [Phenylobacterium zucineum
           HLK1]
          Length = 479

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 44/159 (27%), Gaps = 15/159 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     LT + +A   G+ P+  N  +R       R  + + + ++  A +  
Sbjct: 12  LGARLKRLRRDLGLTQTRMAEDLGVSPSYLNLLERNQ-----RPVTAQVLLRLAEAYDLD 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L   P S   T   +     +            +      G       V E      
Sbjct: 67  LKTLSSDPESASATDLAEVFSDQMFRDLGVARHEVAEVADSAPG-------VSEAIVRLY 119

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC 167
             Y  Q + +            +      ++  +  V  
Sbjct: 120 RAYLDQRRLSELGQVGRPEEGAFENS---VVTPSDWVRD 155


>gi|169639269|gb|ACA60745.1| SodX [Streptomyces peucetius ATCC 27952]
          Length = 139

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD L+++       GD  +++   +   ++ K L  RRG    ++  
Sbjct: 16  EVTGPSMVPTLVHGDQLLVDYRATFRTGDVAVLRHPLQQDLLIVKRLAERRGEGWWVLGD 75

Query: 199 NC 200
           N 
Sbjct: 76  NP 77


>gi|167749402|ref|ZP_02421529.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702]
 gi|167657574|gb|EDS01704.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702]
          Length = 124

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           E + ++     +T   LA +  +   + +  +        R PS E+I KI     
Sbjct: 23 GERVKQLRLSAGMTQEQLAERIWVTKAAISNYE-----LSERNPSPETIIKIAGVFG 74


>gi|160939992|ref|ZP_02087337.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436572|gb|EDP14339.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC
          BAA-613]
          Length = 74

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   I ++ +   L+   LA KAGLD T     +        R  S  S+ KI+ A + 
Sbjct: 10 KVGNRIRQLRKELLLSQESLAFKAGLDRTYIASVENG-----KRNLSIMSLEKIIVALDC 64

Query: 68 TICQLLDLPF 77
          ++ +  +   
Sbjct: 65 SMAEFFETFE 74


>gi|311747857|ref|ZP_07721642.1| toxin-antitoxin system, antitoxin component, Xre family
          [Algoriphagus sp. PR1]
 gi|126575850|gb|EAZ80160.1| toxin-antitoxin system, antitoxin component, Xre family
          [Algoriphagus sp. PR1]
          Length = 203

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          T   +K + E +  +  ++  +   LA  AG+   +  + +          P  ++I ++
Sbjct: 3  TKMENKALGEKLKTLRLKNGFSQDELAESAGVSLRTVQRIENAEAV-----PRMDTIKRL 57

Query: 62 LAATNETICQLLDLPF 77
                +  ++LD   
Sbjct: 58 FQIFGMSPEEVLDWSQ 73


>gi|108757425|ref|YP_634451.1| DNA-binding protein [Myxococcus xanthus DK 1622]
 gi|108461305|gb|ABF86490.1| DNA-binding protein [Myxococcus xanthus DK 1622]
          Length = 185

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 21/172 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I  + E    T + L+R AG+   ++   +          P+   + ++ AA   
Sbjct: 9   RLARNIRSLRETRGATQAQLSRLAGVPRATWAHLESGAAN-----PTLSVLHRVAAALQV 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +L+  P     +     +    +     G          P G +++ V +P      
Sbjct: 64  SLEELIAKPR---ASARHYPRATLPVRTRGGGMLRKLLPDPLP-GMEFDRVELPPQVRIT 119

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKPRT 177
              +          T  T        G+++++ S  +  +  GD ++ +   
Sbjct: 120 GVPH----------TPGTREYLACESGELVLVASGERFHLQPGDVVVFRGDQ 161


>gi|107027576|ref|YP_625087.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693712|ref|YP_839245.1| XRE family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896950|gb|ABF80114.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU
           1054]
 gi|116651712|gb|ABK12352.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
           HI2424]
          Length = 159

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 10/120 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I +A+ +     +LT + LA+ AGL   + N+ +     G+ +      +  +L+    
Sbjct: 5   EIGQAVAKRRAELDLTQAQLAKLAGLSRLTVNQLE----SGKVKDLGINKLIPLLSVLGI 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN------KWNTVGVP 121
            +  L     +                           +G  P G         + V +P
Sbjct: 61  ELLALPRQAQNGLYKAVVSANVSYKGELTERLLADALTTGRIPEGYESQFSVILDEVPLP 120


>gi|262280383|ref|ZP_06058167.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258161|gb|EEY76895.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 209

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 11/181 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T   H  +   I  + +   L+   LA +AG+   +    +    +        ++I  +
Sbjct: 32  TVLQH--VGTNIRSLRDERGLSQQDLADQAGVSRRTIAALE--TGQVNISLAKLDAIAAV 87

Query: 62  LAATNETICQLLDLPFSD-----GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           L+    TI    +L              K+E +  LL   PS S     +     G   +
Sbjct: 88  LSVDFRTIVSAPELKEQTLVNVLAWQGNKEESKATLLASVPSRSQVELWTWSLAVG--ES 145

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
            +   +       IY ++ + T   T    ++P           +   +N G+++L   R
Sbjct: 146 YIAEADAEGWQELIYVLEGELTIQFTDSIKIIPAGSSFSFASSVTYTYINSGNQVLKFMR 205

Query: 177 T 177
            
Sbjct: 206 N 206


>gi|255012031|ref|ZP_05284157.1| DNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313149871|ref|ZP_07812064.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313138638|gb|EFR55998.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 72

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K+  + +  + E   ++   LA +AGL  T     +R       R PS   I KI     
Sbjct: 11 KQFAQRVRTLREAQGISQEKLAERAGLHRTYIGMVERLE-----RNPSLVCIHKIANGLG 65

Query: 67 ETICQ 71
            + +
Sbjct: 66 VHVTE 70


>gi|118477924|ref|YP_895075.1| transcriptional regulator, DNA-binding protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|118417149|gb|ABK85568.1| transcriptional regulator, DNA-binding protein [Bacillus
          thuringiensis str. Al Hakam]
          Length = 69

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 9/77 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    H +I             T   LA++ G+   +    ++         PS    FK
Sbjct: 1  MFLLLHNRIV----VYRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFK 51

Query: 61 ILAATNETICQLLDLPF 77
          I     ++I  + D   
Sbjct: 52 IANVFEKSITDVFDYQE 68


>gi|157164171|ref|YP_001466787.1| anthranilate synthase component II [Campylobacter concisus 13826]
          Length = 71

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 165 VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD----IEWIARIL 219
              GD L +   +  ++ K+L       + ++S+N  +    V++S+     + + +++
Sbjct: 10  AFTGDGLYMVNFSNQLMVKILQLMPYGMLKIVSVNPDFQSYEVDLSETQEHFKIVDKVV 68


>gi|163941382|ref|YP_001646266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163863579|gb|ABY44638.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 142

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   I  + ++ NLT   LA K G+        +        R+P  + + K+    
Sbjct: 2  IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLSKLADCF 53


>gi|332879673|ref|ZP_08447366.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332682390|gb|EGJ55294.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 111

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            + ++I + I ++      T   +A   G++  S++  ++       R  S E + +I 
Sbjct: 1  MITQEQILKNILKIRTDKGFTQQNVAEHLGIEQGSYSLIEKG-----RRELSIERLLQIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
                +  ++  P  +   ++ + K +  +  
Sbjct: 56 IFLGVDVKDIITYPNREYNNSDDEVKAVLQIEL 88


>gi|331646068|ref|ZP_08347171.1| repressor protein [Escherichia coli M605]
 gi|331044820|gb|EGI16947.1| repressor protein [Escherichia coli M605]
          Length = 218

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +AI+R+ E +   T   L    G+  ++   +  R            + + +    T  +
Sbjct: 38  KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 90

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L     S   +      E+                        ++   +P       
Sbjct: 91  LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 143

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                            +        +         +  G  ++     G+I  + +   
Sbjct: 144 -------------VITDNNSEFICDKEF------DDIRDGKWIISID--GEITIRDITRL 182

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G  I +   N  +     ++ DIE I +I+
Sbjct: 183 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 210


>gi|319744842|gb|EFV97180.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813]
          Length = 72

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +  R  +  + LA+  G+   + +  +R         PS     KI     E+
Sbjct: 6  LKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYT-----PSVIIAMKISQVFKES 60


>gi|330910588|gb|EGH39098.1| repressor protein [Escherichia coli AA86]
          Length = 189

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 40/211 (18%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +AI+R+ E +   T   L    G+  ++   +  R            + + +    T  +
Sbjct: 9   KAIERLVEAYGFGTRQALCDHLGVSKSTMATRYMRDI-------FPADWVIQCALETGTS 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L     S   +      E+                        ++   +P       
Sbjct: 62  LNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKDGF-------YIFDKGFLPSTFKKPF 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                            +        +         +  G  ++     G+I  + +   
Sbjct: 115 -------------VITDNNSEFICDKEF------DDIRDGKWIISID--GEITIRDITRL 153

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G  I +   N  +     ++ DIE I +I+
Sbjct: 154 PGGRIFVEGGNRAF---ECKIEDIEIIGKII 181


>gi|229170554|ref|ZP_04298202.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621]
 gi|228612903|gb|EEK70080.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621]
          Length = 69

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 9/77 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    H KI             T   LA++ G+   +    ++         PS    FK
Sbjct: 1  MLLLLHNKIV----VCRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFK 51

Query: 61 ILAATNETICQLLDLPF 77
          I     ++I  + D   
Sbjct: 52 IANIFEKSITDVFDYQE 68


>gi|254393361|ref|ZP_05008507.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294811335|ref|ZP_06769978.1| Putative transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|326439932|ref|ZP_08214666.1| XRE family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|197706994|gb|EDY52806.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294323934|gb|EFG05577.1| Putative transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
          Length = 400

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       I   I    +  +LT +GLA++AG+  T+  K +          P   ++ +
Sbjct: 1  MPHSQDDHIGARIADYRKLRHLTQAGLAQRAGVSRTTVAKIEAGLSPATP--PIVAAVAR 58

Query: 61 ILA 63
          +L 
Sbjct: 59 VLE 61


>gi|163757791|ref|ZP_02164880.1| Transcriptional regulator, XRE family protein [Hoeflea
           phototrophica DFL-43]
 gi|162285293|gb|EDQ35575.1| Transcriptional regulator, XRE family protein [Hoeflea
           phototrophica DFL-43]
          Length = 182

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  + ++ + + ++      +   LA  +G+  ++ ++ +   +      P+ E++  
Sbjct: 1   MDTL-NDRLADRLKQLRATRGWSLQQLADISGVSRSALSRIETGEV-----SPTAETLGA 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           + +A   TI QLL    +  +   + E++          S         P G     V
Sbjct: 55  MSSAFQMTISQLLAPVEAPFQPLVRAEEQSTWRDDENGFSRRVVSP---PAGGLSAEV 109


>gi|153955922|ref|YP_001396687.1| hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555]
 gi|219856264|ref|YP_002473386.1| hypothetical protein CKR_2921 [Clostridium kluyveri NBRC 12016]
 gi|146348780|gb|EDK35316.1| Hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555]
 gi|219569988|dbj|BAH07972.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 80

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I    +   +T + LA K G++  + +K +          PS  +++KI  A N T
Sbjct: 2  LGTKIREYRKSLGMTATSLAEKVGVELATISKIENNKAN-----PSMPTLYKIAEALNTT 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
            +L+            +  +  +
Sbjct: 57 PSELIKDTEIKSFNINSEGTKEVV 80


>gi|89902154|ref|YP_524625.1| XRE family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89346891|gb|ABD71094.1| transcriptional regulator, XRE family [Rhodoferax ferrireducens
           T118]
          Length = 169

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 4/102 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++  A+        LT + LA+  GL   + N+ +     G  R  S     K+L     
Sbjct: 6   ELSSAVRTRRADMGLTQTTLAKLTGLSRATVNQVEN----GTIRDLSLTRAAKLLGILGL 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           ++      P S    T K                   ++   
Sbjct: 62  SVTVTAPRPKSHSHQTAKSSALDIAARTASVSYRVSINADQL 103


>gi|302543610|ref|ZP_07295952.1| PbsX family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302461228|gb|EFL24321.1| PbsX family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 133

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + + +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGDFLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L            ++ +   ++
Sbjct: 56 LAKALRISAETLYVQAGILDERDREETEVRSVI 88


>gi|77543203|gb|ABA87016.1| hypothetical protein [Vibrio cholerae]
 gi|259156517|gb|ACV96461.1| transcriptional regulator, XRE family [Vibrio cholerae Mex1]
          Length = 106

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+  + ++I +++     R   +   L+ ++G+  +  +K +   ++   R  S  ++ +
Sbjct: 1  MSYVT-EQILKSLREARVRKGFSQRELSARSGVPQSHISKIESGSVD--LRISSLIALAR 57

Query: 61 ILA 63
          +L 
Sbjct: 58 VLD 60


>gi|56419132|ref|YP_146450.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|56378974|dbj|BAD74882.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
          Length = 115

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             H  I E I  + ++  ++ +  A +  + P   +  +     G+        + K+ 
Sbjct: 1  MLQH--IGERIRVLRKQKGISLNAFAERLNVSPAYLSNLE----TGKTDTIQLSLLEKLQ 54

Query: 63 AAT 65
             
Sbjct: 55 EEL 57


>gi|291558136|emb|CBL35253.1| Predicted transcriptional regulators [Eubacterium siraeum
          V10Sc8a]
          Length = 106

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           E + ++     +T   LA +  +   + +  +        R PS E+I KI     
Sbjct: 5  GERVKQLRLSAGMTQEQLAERIWVTKAAISNYE-----LSERNPSPETIIKIAGVFG 56


>gi|291514914|emb|CBK64124.1| Peptidase S24-like [Alistipes shahii WAL 8301]
          Length = 109

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILIL----NSAIQVNCGDRLLIKPRTGD---IVAKVL 185
           I   D   +    SM PL + GDI+      +    +  G+  LI         +  K L
Sbjct: 6   IPKCDGGLRIVGDSMYPLLKSGDIVFYKQVHDIMHSIIWGEMYLISFDIDGDEYVSVKYL 65

Query: 186 ISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                   I L+S N  +    + ++ I  +A I
Sbjct: 66  QKSDIPDHIVLVSYNEHHKPMEIHINRIRALAFI 99


>gi|291445816|ref|ZP_06585206.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291348763|gb|EFE75667.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 205

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S +   + E +        L+   LA   G+     ++ +R       R PS + + +
Sbjct: 39  MASLNVGNLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERG-----LRKPSADVLQQ 93

Query: 61  ILAATNET 68
           +  A   +
Sbjct: 94  VAKALRIS 101


>gi|126650379|ref|ZP_01722607.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905]
 gi|126593029|gb|EAZ87011.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905]
          Length = 182

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 46/137 (33%), Gaps = 5/137 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I +M +++ ++   LA +  L  +  +K +          PS  ++ KI    + 
Sbjct: 5   EVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKAT-----PSLVTLSKIAEIFDV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +   +     DG +   K++    +     G      +      N   ++      + +
Sbjct: 60  PMAWFVIQDQFDGISIVSKKERNETVETNQLGYQYELLANKSYMSNINPSIVTVHNGAEN 119

Query: 128 NGIYAIQTQDTRHKTQD 144
             +Y  +  +  +    
Sbjct: 120 LALYTHENDEFIYIISG 136


>gi|78222121|ref|YP_383868.1| XRE family transcriptional regulator [Geobacter metallireducens
          GS-15]
 gi|78193376|gb|ABB31143.1| transcriptional regulator, XRE family [Geobacter metallireducens
          GS-15]
          Length = 181

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI E + R+   ++LT   LA +A L     ++ +          PS  ++  IL     
Sbjct: 2  KIGERLKRLRMINSLTQEELANRADLTKGYISQLENDAT-----SPSIATLKDILDVFGV 56

Query: 68 TICQLLDLP 76
          ++ +    P
Sbjct: 57 SMQEFFSDP 65


>gi|330877739|gb|EGH11888.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965172|gb|EGH65432.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 182

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 54/192 (28%), Gaps = 20/192 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L     T+
Sbjct: 4   GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG--VPEIRSPH 127
                     G+      +         +G          P+           P   S  
Sbjct: 59  ADFFTFDQPPGQDQY-VFRAGDQPDLGRNGVRLLLVGATLPSRQMRFLREQYAPGADSGE 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             I   + ++    T+  ++         ++         GD                 +
Sbjct: 118 EPIVHNEGEECGLVTRG-TVELTINGQVNILG-------PGDGYYFPTTLPH----RFRN 165

Query: 188 RRGRSIDLMSLN 199
                 +++S N
Sbjct: 166 IGQDEAEIISSN 177


>gi|331085520|ref|ZP_08334605.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330407758|gb|EGG87256.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 134

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             + +   I  + +   +T   LA K G+   + +K +R         P   SI ++  
Sbjct: 1  MKKQTLGVMIASIRKERGMTQLELAEKMGVTDKAVSKWERDLS-----CPDVSSIPQLAE 55

Query: 64 ATNETICQLLDLPF 77
              ++ +L+ +  
Sbjct: 56 ILGVSVDELMQVKD 69


>gi|269103372|ref|ZP_06156069.1| transcriptional regulator XRE family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163270|gb|EEZ41766.1| transcriptional regulator XRE family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 212

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 55/215 (25%), Gaps = 12/215 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I R+A+   ++   L    GL   + ++          R    E+I      T  T 
Sbjct: 4   LERIKRLAKIQGISQKQLGEALGLQQGTMSRKLSGKYGIEVRE--LETIA----TTLNTS 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              +     D  T                          F +    +TV V   R+    
Sbjct: 58  IGYILTGQVDTGTQATTTITNESATGSTCTYIPVIHRKDFTSYASGDTVDVVSKRAIPQ- 116

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +  + +       + ++      G   +     Q      +    R  +     +    
Sbjct: 117 -HLDREECLGLLVDNENIAQCAPVGSYALATKTAQYRPKQPVFASVRGSEPDFYHMTQLA 175

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221
              +   S    +P   V   + E    I+   WA
Sbjct: 176 DGVVFSTSQ-PDFPNLFVNNGEFEVHGYIIQSDWA 209


>gi|229168347|ref|ZP_04296072.1| Helix-turn-helix domain protein [Bacillus cereus AH621]
 gi|228615173|gb|EEK72273.1| Helix-turn-helix domain protein [Bacillus cereus AH621]
          Length = 277

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 46/184 (25%), Gaps = 9/184 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14  THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              ++   L    ++     +    +           G   S     G     +      
Sbjct: 69  FEVSL-DYLLKETAEQINETEHGYYVSTEMAEGYIVYGQKISKYIALGFSLLILSTIPYL 127

Query: 125 SPHNGIYAIQTQDTRHKTQD---TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                +                   +     +    +L     +   + L    +  +++
Sbjct: 128 LFKEDVTMSTFLVIIIAVLGIGAMMVPATIEESRYNVLKKEELLFDQNFLKELTKRYEVI 187

Query: 182 AKVL 185
            K  
Sbjct: 188 KKRY 191


>gi|196048104|ref|ZP_03115282.1| helix-turn-helix domain protein [Bacillus cereus 03BB108]
 gi|196021360|gb|EDX60089.1| helix-turn-helix domain protein [Bacillus cereus 03BB108]
          Length = 235

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I    + ++L+ S LA+K G+     ++ +          PS   I K+L   N     L
Sbjct: 5  IKFYRKSNSLSQSELAKKMGVSQKRISQLENSMPNSST-EPSLTEIIKLLTIFNCNFEDL 63

Query: 73 LDLPFSDGRTTE 84
           +    +     
Sbjct: 64 FEFKRRNSEMPN 75


>gi|324997738|ref|ZP_08118850.1| XRE family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 163

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   I    E   ++   LAR AG+     ++ +R       R PS E + +I     
Sbjct: 45  EDIGSYIRSQREAAQVSMRQLARSAGVSNPYLSQVERG-----LRKPSAEILQQIAKGLR 99

Query: 67  ET 68
            +
Sbjct: 100 IS 101


>gi|319938593|ref|ZP_08012980.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319806229|gb|EFW02921.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 114

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + I  + +   ++   LA K G+   + +K +          P  E I  +      T  
Sbjct: 5  DRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQST-----PDLEKIIIMSDFFGVTTD 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
           +L          +K +      + 
Sbjct: 60 YILKGIEPVADKEQKIKSLRVRYFI 84


>gi|296110909|ref|YP_003621290.1| transcriptional regulator, Cro/CI family [Leuconostoc kimchii
          IMSNU 11154]
 gi|295832440|gb|ADG40321.1| transcriptional regulator, Cro/CI family [Leuconostoc kimchii
          IMSNU 11154]
          Length = 192

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I  + +  N + + LA   G+   + +  ++   +   R P  E+  K+     
Sbjct: 1  MNRISELRKETNTSQTELAELLGVTRQAISLYEK-WPDKGGREPKLETWKKLADHFG 56


>gi|239941410|ref|ZP_04693347.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|239987874|ref|ZP_04708538.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379]
 gi|291444855|ref|ZP_06584245.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291347802|gb|EFE74706.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 286

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/176 (9%), Positives = 40/176 (22%), Gaps = 29/176 (16%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    E   LT   LA  A +  +  +  +        R PS E   ++           
Sbjct: 9   LKAQREAAGLTQQQLAELALMTRSHISHIEAG-----RRMPSEEDARRLDLVLGTGNVLT 63

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                                  P +   G          +      +    +       
Sbjct: 64  SFR--------------------PGAEDDGVLADYFGAARHLEQQATMIREFALSLLPGI 103

Query: 133 IQTQDTRHKTQDTSMLPLYR-KGDILILNSAIQVNCGDRL---LIKPRTGDIVAKV 184
           +QT+         +  PL   + D  ++    +      +   ++     +   + 
Sbjct: 104 LQTEAYARSVLGMAFPPLSPAECDKAVVARLNRAKIFQGVKPPVVWAILDEASLRR 159


>gi|83950958|ref|ZP_00959691.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM]
 gi|83838857|gb|EAP78153.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM]
          Length = 199

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          + I  A+    E   L+   L++++G+  +  +K +   ++   R  S  S+   L 
Sbjct: 6  EHIAVALREARENKGLSQRELSKRSGVPQSHISKIESNNVD--LRLSSLASLAHALD 60


>gi|15923339|ref|NP_370873.1| transcription regulator [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|15926050|ref|NP_373583.1| hypothetical protein SA0337 [Staphylococcus aureus subsp. aureus
          N315]
 gi|148266836|ref|YP_001245779.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus JH9]
 gi|150392881|ref|YP_001315556.1| hypothetical protein SaurJH1_0407 [Staphylococcus aureus subsp.
          aureus JH1]
 gi|156978677|ref|YP_001440936.1| hypothetical protein SAHV_0346 [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|253316550|ref|ZP_04839763.1| hypothetical protein SauraC_10475 [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|255005144|ref|ZP_05143745.2| hypothetical protein SauraM_01715 [Staphylococcus aureus subsp.
          aureus Mu50-omega]
 gi|257795026|ref|ZP_05644005.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258413531|ref|ZP_05681806.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258421345|ref|ZP_05684272.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|258436954|ref|ZP_05689294.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|258444329|ref|ZP_05692663.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258444866|ref|ZP_05693187.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          A6300]
 gi|258448071|ref|ZP_05696200.1| transcription regulator [Staphylococcus aureus A6224]
 gi|258455904|ref|ZP_05703859.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|269201997|ref|YP_003281266.1| putative transcriptional regulator, Cro/CI family [Staphylococcus
          aureus subsp. aureus ED98]
 gi|282893508|ref|ZP_06301741.1| transcriptional regulator [Staphylococcus aureus A8117]
 gi|282927402|ref|ZP_06335020.1| transcriptional regulator [Staphylococcus aureus A10102]
 gi|295405621|ref|ZP_06815431.1| hypothetical protein SMAG_00775 [Staphylococcus aureus A8819]
 gi|296275176|ref|ZP_06857683.1| putative transcriptional regulator, Cro/CI family protein
          [Staphylococcus aureus subsp. aureus MR1]
 gi|297245528|ref|ZP_06929396.1| transcriptional regulator [Staphylococcus aureus A8796]
 gi|13700263|dbj|BAB41561.1| SA0337 [Staphylococcus aureus subsp. aureus N315]
 gi|14246117|dbj|BAB56511.1| probable transcription regulator [Staphylococcus aureus subsp.
          aureus Mu50]
 gi|147739905|gb|ABQ48203.1| transcriptional regulator, XRE family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149945333|gb|ABR51269.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
          aureus JH1]
 gi|156720812|dbj|BAF77229.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788998|gb|EEV27338.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257839778|gb|EEV64247.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257842769|gb|EEV67191.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|257848745|gb|EEV72732.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|257850588|gb|EEV74536.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257856184|gb|EEV79098.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          A6300]
 gi|257858586|gb|EEV81460.1| transcription regulator [Staphylococcus aureus A6224]
 gi|257862116|gb|EEV84889.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|262074287|gb|ACY10260.1| putative transcriptional regulator, Cro/CI family [Staphylococcus
          aureus subsp. aureus ED98]
 gi|282590726|gb|EFB95802.1| transcriptional regulator [Staphylococcus aureus A10102]
 gi|282764194|gb|EFC04321.1| transcriptional regulator [Staphylococcus aureus A8117]
 gi|285816071|gb|ADC36558.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus
          04-02981]
 gi|294969696|gb|EFG45715.1| hypothetical protein SMAG_00775 [Staphylococcus aureus A8819]
 gi|297177514|gb|EFH36765.1| transcriptional regulator [Staphylococcus aureus A8796]
 gi|312828871|emb|CBX33713.1| helix-turn-helix family protein [Staphylococcus aureus subsp.
          aureus ECT-R 2]
 gi|315129994|gb|EFT85983.1| hypothetical protein CGSSa03_03972 [Staphylococcus aureus subsp.
          aureus CGS03]
 gi|329725743|gb|EGG62222.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21172]
          Length = 67

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R  L  + LA+ AG+   + +  +R         PS  +  KI    NET+ 
Sbjct: 3  NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57

Query: 71 QLLDLPF 77
           +  +  
Sbjct: 58 TVFIIEE 64


>gi|326331424|ref|ZP_08197714.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Nocardioidaceae bacterium Broad-1]
 gi|325950680|gb|EGD42730.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Nocardioidaceae bacterium Broad-1]
          Length = 508

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT     +I   I    +   LT + LA       ++ N+ ++          S E I +
Sbjct: 1  MTDGYKGRIGNLIRDARKHKGLTQAQLADLLNTSQSAINRIEQGQQN-----LSLEMIAR 55

Query: 61 ILAATNETICQ 71
          + AA + ++  
Sbjct: 56 VGAALDSSLVD 66


>gi|298717173|ref|YP_003729815.1| HTH-type transcriptional regulatory protein [Pantoea vagans C9-1]
 gi|298361362|gb|ADI78143.1| Putative HTH-type transcriptional regulatory protein [Pantoea
           vagans C9-1]
          Length = 192

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 5/135 (3%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + +I   +    ER   + + LA  +G+     +K +R         P+   + ++  A 
Sbjct: 13  NARIGLKVKAERERRGWSLTDLAENSGVSRAMIHKIERGES-----SPTATLLARLSGAF 67

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + ++ QLL           + E +                 G  P       +       
Sbjct: 68  DMSMSQLLAEMEVRTGVLVRYENQAVWQDPETGYIRRHASPGQIPVDLVSIELPANTAVP 127

Query: 126 PHNGIYAIQTQDTRH 140
                Y  + Q    
Sbjct: 128 MPAISYLSRRQLIWV 142


>gi|296875997|ref|ZP_06900055.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|296432988|gb|EFH18777.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
          Length = 175

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/90 (6%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + +   L+   +A++  +   + ++ +    + +      E   ++      ++
Sbjct: 1  MNRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKP-----EKAQQLADCFGVSV 55

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
            LL             +        P + 
Sbjct: 56 GYLLGYSEYRDSQEASYQLYQKDPDDPYNH 85


>gi|291521015|emb|CBK79308.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 253

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S++K    +  + +  NLT   LA K  +   + +K +R         P+   +  
Sbjct: 1  MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 55

Query: 61 ILAATNETICQ 71
          I    + ++ +
Sbjct: 56 IADILDVSVTE 66


>gi|163794397|ref|ZP_02188369.1| hypothetical protein BAL199_22059 [alpha proteobacterium BAL199]
 gi|159180565|gb|EDP65086.1| hypothetical protein BAL199_22059 [alpha proteobacterium BAL199]
          Length = 295

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +++  +R   T + LAR+ G+D ++ ++          R P  +++  I +A   ++ 
Sbjct: 21  ERLEQAMDRAGTTRAALARRIGVDRSTLSQVLSSESV---RLPRADTVAAIASALQVSLD 77

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            LL L  S+    +  E+   +     +          +     +    VP        I
Sbjct: 78  WLLGLTESNQLGADILERAPEISPRSRAPEDENLR-RWYAESAGYKIRYVPTNLPDPLKI 136

Query: 131 YAIQTQDT 138
             +   + 
Sbjct: 137 TEVVGHEY 144


>gi|160936523|ref|ZP_02083890.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440314|gb|EDP18059.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC
          BAA-613]
          Length = 177

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   +  +     LT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2  EIGSKLKELRVLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56

Query: 68 TICQLLD 74
          TI +  +
Sbjct: 57 TIGEFFN 63


>gi|306521451|ref|ZP_07407798.1| putative phage DNA-binding protein [Clostridium difficile
           QCD-32g58]
          Length = 166

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 8/133 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + + ++ ++  LT   LA  +G+   +    +        R PS +++ K+  A   
Sbjct: 2   QIGKNLKKIRKQKELTQIQLAEISGISRNALINYEND-----KRIPSIDTLSKLAKALKI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                     +        E  +  L          FD  +    N      +    S  
Sbjct: 57  EKTIFYFDIEN---EVMTNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLL 113

Query: 128 NGIYAIQTQDTRH 140
            G ++ + Q  + 
Sbjct: 114 LGAWSDKDQYYKL 126


>gi|134093774|ref|YP_001098849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133737677|emb|CAL60722.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
          Length = 78

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +K    +    E   ++   LA KAGL  T   + +R       R  S +++ ++  A 
Sbjct: 14 RQKYGSRLRFAREALGISQEALAEKAGLHRTYIGQVERGE-----RNISIDNLERLADAV 68

Query: 66 NETICQL 72
           E + ++
Sbjct: 69 GEQLWEM 75


>gi|119854959|ref|YP_935564.1| helix-turn-helix domain-containing protein [Mycobacterium sp. KMS]
 gi|119697677|gb|ABL94749.1| helix-turn-helix domain protein [Mycobacterium sp. KMS]
          Length = 399

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E IDR    H ++ S +AR+ G+   +  K +   I G +R P  E++  +     +
Sbjct: 5   RLVELIDRYRTAHGVSESEVARRIGMSRENLRKWR---INGVSRLPDRENLAAVARVIGK 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
              +++     D       +   P  +        
Sbjct: 62  PYREVVSAALFDTGYLTDDQASTPRPHDEVLHDAI 96


>gi|52141788|ref|YP_085042.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51975257|gb|AAU16807.1| conserved hypothetical protein; possible transcriptional
          regulator [Bacillus cereus E33L]
          Length = 145

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   I  + ++ NLT   LA K G+        +        R+P  + + K+    
Sbjct: 5  IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLSKLADCF 56


>gi|310830055|ref|YP_003962412.1| Transcriptional regulator [Eubacterium limosum KIST612]
 gi|308741789|gb|ADO39449.1| Transcriptional regulator [Eubacterium limosum KIST612]
          Length = 130

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E I ++ +   ++   L  K G+   +  K            P+TE++ K+    N 
Sbjct: 2   NVLERIQKLGKEKGISVGFLEEKLGIGRGTIYKW-------NKSAPNTENLVKVADYFNV 54

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +I  LL    S     EK   +I         +   +             + + +I    
Sbjct: 55  SIDYLLGRDHSLNEEDEKDIAKIMDKMKKQLANETDWVFDGEAMNPATIELLLQDIEQQE 114

Query: 128 NGIYAIQTQDT 138
             + A+     
Sbjct: 115 RIVKALNKNYI 125


>gi|332655055|ref|ZP_08420796.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
 gi|332515915|gb|EGJ45524.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
          Length = 101

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           + I  + + H LT   LA + G+   +  + +    
Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNR 75


>gi|238894952|ref|YP_002919686.1| putative regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|238547268|dbj|BAH63619.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 193

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 8/138 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E    + + LA +AG      +K +R         P+   + ++  A 
Sbjct: 9   NQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGES-----SPTASMLGRLSGAF 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             ++  L+           +     P+   P S       S           + +P    
Sbjct: 64  GISMSTLIARAEMQEGKLLR-FASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPGSD 122

Query: 126 PHNGI--YAIQTQDTRHK 141
                  YA+  Q    +
Sbjct: 123 VPMPAASYALARQLIWLQ 140


>gi|226948868|ref|YP_002803959.1| putative DNA-binding protein [Clostridium botulinum A2 str.
          Kyoto]
 gi|226843124|gb|ACO85790.1| putative DNA-binding protein [Clostridium botulinum A2 str.
          Kyoto]
          Length = 370

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          M   S   I E I R+ +   +T   LA   G+   + +K +    
Sbjct: 1  MEKLS---IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETS 43


>gi|257413803|ref|ZP_04744284.2| transcriptional regulator, Cro/CI family [Roseburia intestinalis
           L1-82]
 gi|257202203|gb|EEV00488.1| transcriptional regulator, Cro/CI family [Roseburia intestinalis
           L1-82]
 gi|291538784|emb|CBL11895.1| Uncharacterized conserved protein, contains double-stranded
           beta-helix domain [Roseburia intestinalis XB6B4]
          Length = 183

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 11/137 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +  +  ++ LT   LA ++ L     ++ +R         PS  ++  I+     
Sbjct: 6   DIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQN-----SPSIGTLLDIIQCLGT 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIR 124
           T  +               EK+         G+            N    V +   P   
Sbjct: 61  TPAEFFTDEE---PEQIVFEKDDYFEKISEDGNKMIEWIIPNAQKNSMEPVRLTLKPGGS 117

Query: 125 SPHNGIYAIQTQDTRHK 141
           S  +  +A +      K
Sbjct: 118 SDTHLPHAGEEFGYVLK 134


>gi|224535561|ref|ZP_03676100.1| hypothetical protein BACCELL_00425 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522851|gb|EEF91956.1| hypothetical protein BACCELL_00425 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 266

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 10/114 (8%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC----G 168
              +++   E   P       Q  D        SM P    G  ++L      N     G
Sbjct: 148 EVSDSLEYAEKLIPFTDA---QEGDIALVVSGNSMDPTCPSGSKVLLREVQNWNEYFGFG 204

Query: 169 DRLLIKPRTGDIVAKVLIS---RRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +  ++    G  + K +          +   S N  YP + +  S I  + +++
Sbjct: 205 NIFVLLLTDGRRILKEVQKYQDDPKNYVLCKSHNDKYPEEELPKSMISSVWKVV 258


>gi|168180189|ref|ZP_02614853.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182668963|gb|EDT80939.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916]
          Length = 370

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          M   S   I E I R+ +   +T   LA   G+   + +K +    
Sbjct: 1  MEKLS---IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETS 43


>gi|152970466|ref|YP_001335575.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|330003695|ref|ZP_08304714.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
 gi|150955315|gb|ABR77345.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|328536870|gb|EGF63173.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
          Length = 193

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 8/138 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E    + + LA +AG      +K +R         P+   + ++  A 
Sbjct: 9   NQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGES-----SPTASMLGRLSGAF 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             ++  L+           +     P+   P S       S           + +P    
Sbjct: 64  GISMSTLIARAEMQEGKLLR-FASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPGSD 122

Query: 126 PHNGI--YAIQTQDTRHK 141
                  YA+  Q    +
Sbjct: 123 VPMPAASYALARQLIWLQ 140


>gi|71907867|ref|YP_285454.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Dechloromonas aromatica RCB]
 gi|71847488|gb|AAZ46984.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB]
          Length = 119

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K++   +    ++   T   +A + G+D  + ++ +R         PS  ++ ++  A  
Sbjct: 13 KRLGGNLSERRKQLGWTQEMVAERVGVDAETISRIERGA-----HLPSLPTLDRLAVALR 67

Query: 67 ETICQ 71
           +   
Sbjct: 68 CSAGD 72


>gi|306828548|ref|ZP_07461743.1| transcriptional regulator [Streptococcus mitis ATCC 6249]
 gi|304429347|gb|EFM32432.1| transcriptional regulator [Streptococcus mitis ATCC 6249]
          Length = 99

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   +  +  R  L  + LA+ AG+   + +  +R     
Sbjct: 33 LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTP 72


>gi|296448802|ref|ZP_06890649.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
 gi|296253688|gb|EFH00868.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
          Length = 93

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   + +   R  L+ + LA + G   ++  + +          PST+++ +   AT  
Sbjct: 30 EISAELVKARLRAGLSQAELATRMGTSQSAIARLESGQT-----LPSTKTLLRFAEATGS 84

Query: 68 TIC 70
             
Sbjct: 85 KFH 87


>gi|295112179|emb|CBL28929.1| Predicted transcriptional regulators [Synergistetes bacterium SGP1]
          Length = 155

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 35/147 (23%), Gaps = 3/147 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI + +  + +   L+   LA+  G+D  +  + +           S + + + L  T  
Sbjct: 2   KISDRVKTLRDLRGLSQGDLAQIIGVDVNTIWRWENGRSSPAR---SIQKLAQALDTTTA 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +    D P        +            +                +       +  P 
Sbjct: 59  YLLGETDNPKRYTSRLLELVGTDGNESSLVTSEHSTLGDSEAVARLIYERPDGERLELPA 118

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKG 154
                   +         S+   +   
Sbjct: 119 TPEGYALFEKLVVAMMTDSLKKEFSDS 145


>gi|83590551|ref|YP_430560.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
           39073]
 gi|83573465|gb|ABC20017.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC
           39073]
          Length = 152

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K + E +  + +   L+ + +A+   +  ++    ++       R P  E++ ++    +
Sbjct: 2   KSLGERLAFLRKERALSQAEMAKLLNMGQSTIAMYEKN-----KRRPDPETLERLADFFD 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            +I  LL    S  + T   + E            G       P 
Sbjct: 57  VSIDYLLGRADSRQKETYPLQDETQARTTMVLLEPGVRTLLADPI 101


>gi|29654094|ref|NP_819786.1| hypothetical protein CBU_0762 [Coxiella burnetii RSA 493]
 gi|212212773|ref|YP_002303709.1| hypothetical protein CbuG_1240 [Coxiella burnetii CbuG_Q212]
 gi|29541360|gb|AAO90300.1| hypothetical protein CBU_0762 [Coxiella burnetii RSA 493]
 gi|212011183|gb|ACJ18564.1| hypothetical protein CbuG_1240 [Coxiella burnetii CbuG_Q212]
          Length = 208

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 65/208 (31%), Gaps = 22/208 (10%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           L+    A+K+G+  T+    +    +G       +S+ + + A            +    
Sbjct: 4   LSRREFAKKSGIANTTLQHWE----DGEKHTLPEKSVRRFIKALLNLGV-HCSYDWLMHG 58

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHK 141
                +    +++   +           PT          EI+       +         
Sbjct: 59  KGPAPQYAGHVIFQEETTD--------LPTHGARQKNEDEEIKEELTLFLSRNKNTVHLV 110

Query: 142 TQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
             D +M P + +G+++    +    I+   G   ++  + GD++ + ++         + 
Sbjct: 111 VSDDAMEPRFVQGEVVAGVRVYGKEIEKLIGLDCIVLVQGGDLLLRTILKGDVEGYYHLG 170

Query: 198 L-NC---CYPVDTVEMSDIEWIARILWA 221
             N            + ++   A ++WA
Sbjct: 171 YTNPKTTASKPFLYNI-ELVNAAPVIWA 197


>gi|288904450|ref|YP_003429671.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|306830483|ref|ZP_07463653.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977446|ref|YP_004287162.1| hypothetical protein SGGBAA2069_c02460 [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731175|emb|CBI12723.1| putative transcriptional regulator [Streptococcus gallolyticus
           UCN34]
 gi|304427508|gb|EFM30610.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177374|emb|CBZ47418.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 208

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 53/211 (25%), Gaps = 23/211 (10%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I+ + +++NL+    A    +   + +  +         +P  E + KI      ++  
Sbjct: 2   NINELRKKNNLSQDEFANLFHVSRQTVSSWENGKS-----YPDVEMLIKISQHFGISVDD 56

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L+         T  K K    L+                  NK N+  V           
Sbjct: 57  LVKNE--MHLPTSNKPKTKSRLWLIALPIFVLICVIAVGIWNKHNSQSVNFSMKDDKTYR 114

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR---LLIKPRTGDIVA------ 182
           +  T  T              K   L +      + G+    ++                
Sbjct: 115 SNDTAQTSLTVAKGYF--TVPKAGKLEVKVNATTDNGNLHLTIVDNNNHHYYQIDGDDLK 172

Query: 183 ---KVLISRRGRSIDLMSLNCCYPVDTVEMS 210
              K+        I + +    Y    V + 
Sbjct: 173 DSQKLYFKSGDYCIRITAD--AYTEKVVSLD 201


>gi|257439384|ref|ZP_05615139.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257198259|gb|EEU96543.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 90

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I  AI+   +   LT   LA K G    + ++ +          PS E + K+ A   
Sbjct: 29 EAICAAIES-RKAAGLTQKQLAEKMGTAQANISRFENGNSN-----PSLEFLQKMAACMG 82

Query: 67 ETIC 70
          +T+ 
Sbjct: 83 KTLH 86


>gi|160901295|ref|YP_001566877.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366879|gb|ABX38492.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 470

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 17/188 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++   H L+   LA   GL P+  N+ ++       R  +   + K+  A    I Q 
Sbjct: 10  LRKLRAEHGLSQIALAHALGLSPSYLNQLEQNQ-----RPLTVSVLLKLNRALGVDIQQF 64

Query: 73  LDLPF-------SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR- 124
            +           +      +   +P L    +       + +         +   E   
Sbjct: 65  SEDEEARLVAGLREALAESPESIALPELQEVAAQMPALGRAVMALHRRHLEALERIESMA 124

Query: 125 --SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                +       +    +             D   ++ A Q   G+         D + 
Sbjct: 125 LRLGDDRSDMPVARTMPFEAVRDFFFAHQNYFDE--VDRAAQALAGEARADPGHLADWLV 182

Query: 183 KVLISRRG 190
           + L  R G
Sbjct: 183 RRLQQRHG 190


>gi|296840682|ref|ZP_06863200.2| transcriptional regulator, Cro/CI family [Neisseria polysaccharea
          ATCC 43768]
 gi|296840230|gb|EFH24168.1| transcriptional regulator, Cro/CI family [Neisseria polysaccharea
          ATCC 43768]
          Length = 68

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +KI   I  + +  NL+    A KA +D T     ++       R  S +++ KI+ A  
Sbjct: 4  EKIGARIRELRKAQNLSQEKFALKAEIDRTYLAGIEQG-----KRNLSMKNMEKIINALG 58

Query: 67 ETICQLL 73
           T  Q  
Sbjct: 59 TTFHQFF 65


>gi|282866669|ref|ZP_06275710.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282558455|gb|EFB64016.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 521

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
             + ER  L+ + +AR  G+ P++ +  +        R P+ E+  K     +    +L 
Sbjct: 27  RELRERAQLSKAQVARALGVSPSTLSGWESG------RDPAGEARAKYAYLLDGLNAKLA 80

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                       +  E P+     + +     S     G   + V +
Sbjct: 81  TEETPTETENTAELAEQPMASGAAAAAVTSTSSPE--VGQDEDEVEL 125


>gi|290954828|ref|YP_003486010.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260644354|emb|CBG67439.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 204

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S  +  +   +  + E+  L+ + LAR+AGL   + +  ++         P+ +++F 
Sbjct: 1   MVSAGNAVVARNVRLLREQRGLSLARLAREAGLAKQTLSNLEQGTGN-----PTVDTLFS 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I  A    + +L+             ++   +++    G        V+ +G   N +
Sbjct: 56  IATALGVPVTRLVAEREQ----VMTVQRGADVVWKEHEGLETRALDHVYGSGVIENYL 109


>gi|256004475|ref|ZP_05429455.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
 gi|255991616|gb|EEU01718.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
          Length = 376

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       I   I +M     LT   +A   G+   S +K +         +P    + +
Sbjct: 1  MKM-KEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQS-----YPDITFLPQ 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86
          +    N +I +L+       +   +K
Sbjct: 55 LATLFNISIDELMGYEPQMSKEDIRK 80


>gi|229170243|ref|ZP_04297926.1| Transcriptional regulator, XRE [Bacillus cereus AH621]
 gi|228613239|gb|EEK70381.1| Transcriptional regulator, XRE [Bacillus cereus AH621]
          Length = 166

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   I  + ++ NLT   LA K G+        +        R+P  + + K+    
Sbjct: 26 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCF 77


>gi|281418200|ref|ZP_06249220.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
 gi|281409602|gb|EFB39860.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
          Length = 376

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       I   I +M     LT   +A   G+   S +K +         +P    + +
Sbjct: 1  MKM-KEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQS-----YPDITFLPQ 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86
          +    N +I +L+       +   +K
Sbjct: 55 LATLFNISIDELMGYEPQMSKEDIRK 80


>gi|169344650|ref|ZP_02865615.1| LexA repressor [Clostridium perfringens C str. JGS1495]
 gi|169297260|gb|EDS79372.1| LexA repressor [Clostridium perfringens C str. JGS1495]
          Length = 365

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193
                 + +  SM  L++  +++I         GD ++       +      I ++   +
Sbjct: 255 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSEHNEATC-KKIHKKKDKL 313

Query: 194 DLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222
           +L   +   Y +   +  SDI  I  ++  S
Sbjct: 314 ELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 343



 Score = 37.8 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +    + + ++    A++  +  ++ +  +R   E     P   ++ K+    N 
Sbjct: 9  RLATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSE-----PPIYTLVKMSEVMNC 63

Query: 68 TICQ 71
          +I +
Sbjct: 64 SIDE 67


>gi|149275690|ref|ZP_01881835.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39]
 gi|149233118|gb|EDM38492.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39]
          Length = 71

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             K + + I  + ++  ++   LA+K G+   + +K +   IE      S   ++++  
Sbjct: 1  MKSKIVLQRIRILRKKSGMSQLALAKKLGMSQNALSKIELGEIE-----LSLSHLYQLAD 55

Query: 64 ATNETICQLLDLPF 77
               +  L+ +  
Sbjct: 56 LLEIDLFDLVRIDE 69


>gi|126724437|ref|ZP_01740280.1| Transcriptional Regulator, XRE family protein [Rhodobacterales
          bacterium HTCC2150]
 gi|126705601|gb|EBA04691.1| Transcriptional Regulator, XRE family protein [Rhodobacterales
          bacterium HTCC2150]
          Length = 199

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          + I  ++    E   L+   L+ ++G+  +  +K +   ++   R  S  S+   L 
Sbjct: 6  ENIAASLKSARENKGLSQRELSARSGVPQSHISKIESNAVD--LRLSSLASLAHALD 60


>gi|323142578|ref|ZP_08077394.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322413011|gb|EFY03914.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 101

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           + I  + + H LT   LA + G+   +  + +    
Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNR 75


>gi|302554082|ref|ZP_07306424.1| signal peptidase [Streptomyces viridochromogenes DSM 40736]
 gi|302471700|gb|EFL34793.1| signal peptidase [Streptomyces viridochromogenes DSM 40736]
          Length = 145

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD L+++   ++  GD ++++       +V K +  RR     ++  
Sbjct: 22  EVTGPSMVPTLYHGDRLLVHYGARIKPGDVIVLRHPFQQDLLVVKRIAERRETGWWVLGD 81

Query: 199 NCCYP-----VDTVEMSDIEWIARI 218
           N  Y         V   D+  + R+
Sbjct: 82  N-AYAGGDSTDYGVVPDDL-VLGRV 104


>gi|312198778|ref|YP_004018839.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311230114|gb|ADP82969.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 200

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 39/139 (28%), Gaps = 7/139 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I  +I  +  +  LT   LA KA L     ++ +R         PS  S+ ++  A   
Sbjct: 18  RIGRSIRVLRRQQGLTLVQLATKAELSHPFLSQLERGLAR-----PSMASLHRLAQALGT 72

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNT-VGVPEIRS 125
           T   L+ +   DG       +   +                    G +    V      +
Sbjct: 73  TQPALMSMAADDGAALSADGRVSLVTAGSGVPVDNPGGVARSLVAGARAIYPVLFDGAPA 132

Query: 126 PHNGIYAIQTQDTRHKTQD 144
                Y     +  H    
Sbjct: 133 EFGQAYTHPGDEFVHVIAG 151


>gi|159039604|ref|YP_001538857.1| putative phage repressor [Salinispora arenicola CNS-205]
 gi|157918439|gb|ABV99866.1| putative phage repressor [Salinispora arenicola CNS-205]
          Length = 108

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL--LIKPRTGDIVAKVLISRRGRSIDL 195
                  SM+P  R GD++++    + V  GD +  + + R   +V K  ++       L
Sbjct: 10  AVLVSGPSMVPTLRHGDVVLVRRGDRGVRVGDVVIAVFRSRPDLLVVKRAVAPAAGGWWL 69

Query: 196 MSLNC--CYPVDTVEMSDIEWIARIL 219
              N           ++DI    R++
Sbjct: 70  TGDNPLVSDDSRAYGVADIR--GRVV 93


>gi|125623644|ref|YP_001032127.1| hypothetical protein llmg_0793 [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|124492452|emb|CAL97394.1| CI [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070411|gb|ADJ59811.1| hypothetical protein LLNZ_04110 [Lactococcus lactis subsp.
          cremoris NZ9000]
          Length = 165

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          E +    +  NL+   LA K G   ++ ++ +      +
Sbjct: 8  ERLKEARKAANLSQQALADKIGRTKSTISRWESGERNPK 46


>gi|296533524|ref|ZP_06896097.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957]
 gi|296266156|gb|EFH12208.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957]
          Length = 208

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          S +++ E +  + +R  L+   L R+ GL     ++ +R       R     S+ 
Sbjct: 24 SDRRLGECVRLLRQRLGLSIQELGRRTGLSIGMISQLERGLATPSVRTLRLLSLA 78


>gi|312141162|ref|YP_004008498.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|325674016|ref|ZP_08153706.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
 gi|311890501|emb|CBH49819.1| putative transcriptional regulator [Rhodococcus equi 103S]
 gi|325555281|gb|EGD24953.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
          Length = 469

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++     L+ + LA+   +  +  N+ +        R  +   + +I       
Sbjct: 6   VGARLRQLRTERGLSQAALAKTLDISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      +                P
Sbjct: 61  TTFFSSQDDTRLIAELREVALDKDMGIDADAQEIAEMVSSHP 102


>gi|227364856|ref|ZP_03848903.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
 gi|325682519|ref|ZP_08162036.1| LexA repressor [Lactobacillus reuteri MM4-1A]
 gi|227070119|gb|EEI08495.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
 gi|324978358|gb|EGC15308.1| LexA repressor [Lactobacillus reuteri MM4-1A]
          Length = 86

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR-TGDIVAKVLI 186
             +  +      + +  SM P    G I+ +     V  G+          +   K + 
Sbjct: 27  KRFFPKGNLFALRCKGKSMEPTIHDGSIVTIREQPTVEDGEIAAALVDGDNEATLKRVK 85


>gi|188534357|ref|YP_001908154.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188029399|emb|CAO97276.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 187

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 47/162 (29%), Gaps = 10/162 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58
           + K++ + +  +    + +   LA   G+   S ++ +R          +        ++
Sbjct: 6   TEKRLAQRLCDLRREKSWSLETLAELTGISRASLSRIERAESSPTATLLNRLCNAYGLTM 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            ++L+       QLL           +   +   +    +             G + +  
Sbjct: 66  SRLLSDVERDGIQLLRPESQSLWRDAQNGYQRRSVSPTAAAFHAELVEARLDAGARIDY- 124

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
            +P +      I+ +       +           +GD L  +
Sbjct: 125 DIPPLAGLEQHIWMLGG---VLEFAMDDRQWRLEQGDCLRFH 163


>gi|118619637|ref|YP_907969.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118571747|gb|ABL06498.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
          Length = 138

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 10/124 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E  +++   LA ++G+     ++ +R       R PS + + +I  A   
Sbjct: 20  DIGSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLAQIAKALRV 74

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-----TGNKWNTVGVPE 122
           +   L         +   + +++ +     +         ++                P 
Sbjct: 75  SAEVLYVRAGILEPSETSQVRDVIITDTAITERQKQILLDIYASFTQQNEAVCEEYSSPS 134

Query: 123 IRSP 126
               
Sbjct: 135 EIDD 138


>gi|84502726|ref|ZP_01000845.1| DNA binding protein, putative [Oceanicola batsensis HTCC2597]
 gi|84389121|gb|EAQ01919.1| DNA binding protein, putative [Oceanicola batsensis HTCC2597]
          Length = 288

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++    + +  +   ++ S LAR  G+D ++ ++          R P+ + + +  AA  
Sbjct: 12  EQFRMRLSQAMQNEGMSQSALARAVGVDRSTISQLLTGSG---ARLPNAQVVGECAAALG 68

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119
            +   LL +              + L   P +       +      G K   V 
Sbjct: 69  VSSDWLLSISQHPETAANLLAASLSLTAAPRALVDEQIFAWHREAAGYKIRHVP 122


>gi|317503022|ref|ZP_07961104.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665859|gb|EFV05444.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 199

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 39/216 (18%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  + H +  + LA + G+ P   N               +  + +I     + I  +
Sbjct: 6   VRKTLQEHCINLAWLAEQLGISPQGLN------SRLNAHLFKSSYLQEITNILQKDIFGI 59

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
              P        +    I       +                   V +P        IY 
Sbjct: 60  GTKPNMQPILNIRVRDNITKELSTTNFP-------------VIEYVSIPAFAGCLGFIY- 105

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIVAKVLISRRGR 191
                           P Y  GDI+ +    +    G + LI   +   V     + +  
Sbjct: 106 ----------YGKDAAPKYEAGDIIFILPETEAITPGRKYLIITDSDRFVRFAYEADKKG 155

Query: 192 SIDLMSLNCC--------YPVDTVEMSDIEWIARIL 219
            + L ++N          YP   ++ SDI    +++
Sbjct: 156 RVRLSAINPATDTEGARIYPDTEIKTSDILHAYKVV 191


>gi|300115617|ref|YP_003762191.1| XRE family transcriptional regulator [Nitrosococcus watsoni
          C-113]
 gi|299541559|gb|ADJ29870.1| transcriptional regulator, XRE family [Nitrosococcus watsonii
          C-113]
          Length = 76

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  +     LT + LA+KA +D +  +K +R   E      +   + KI  A + +
Sbjct: 3  VGKNIKGLRIAAGLTQTQLAKKAHIDQSGLSKIERGENE----SVTLPMLRKIAKALDCS 58


>gi|297538223|ref|YP_003673992.1| XRE family transcriptional regulator [Methylotenera sp. 301]
 gi|297257570|gb|ADI29415.1| transcriptional regulator, XRE family [Methylotenera sp. 301]
          Length = 184

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  +  RH L+   LA+KAG+   + +  +          PS  ++ +ILA    
Sbjct: 4  DLGARLKIVRLRHQLSQRALAKKAGVANATISLIESGNT-----SPSVSALKRILAGIPM 58

Query: 68 TICQLLDLPFSDGRTT 83
          T+ +       + ++ 
Sbjct: 59 TLAEFFSDELPNMQSE 74


>gi|293378126|ref|ZP_06624295.1| DNA-binding protein [Enterococcus faecium PC4.1]
 gi|292642990|gb|EFF61131.1| DNA-binding protein [Enterococcus faecium PC4.1]
          Length = 180

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 15/139 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFSILEVLGV 56

Query: 68  TICQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           T  +                D      +E    L +     +    +  +          
Sbjct: 57  TPEEFFHQEAANLQVVYSKEDHTVYFDEENGYELEWLVVDSNEKEMEPVLLTFEGAGEYK 116

Query: 119 GVPEIRSPHNGIYAIQTQD 137
                 S    I+ ++ + 
Sbjct: 117 TFEPSLSE-TFIFVLEGEL 134


>gi|253681078|ref|ZP_04861881.1| DNA-binding protein [Clostridium botulinum D str. 1873]
 gi|253562927|gb|EES92373.1| DNA-binding protein [Clostridium botulinum D str. 1873]
          Length = 221

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 58/213 (27%), Gaps = 5/213 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR---WPSTESIFKILAA 64
           +I   I     + N+T   LA+K G+      + +              S      +   
Sbjct: 3   RIGSKIREARLKSNITEKQLAKKIGVSEKFIKEVESGKKVINESVMGKISKVLGKDLNDV 62

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           T     +  +   S     +  E    +                +          +P I 
Sbjct: 63  TMSFEAEFYEEEKSQNTNKKTVETINDVWNDALGSVLKPVPVYGYDMARIIEMRKLPIIG 122

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           +   G +A           D  +     KGDI       ++       +    G+   + 
Sbjct: 123 NKVEG-HAKDKVLFLKVEDDDMIGSRIAKGDIAFGYITHEIENNALC-LIEYNGERHIRH 180

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIAR 217
           +       + L+S       +TV + DI+ + R
Sbjct: 181 IKKLDSNKLLLISNGNSLRTETVTVRDIKVLVR 213


>gi|253681413|ref|ZP_04862210.1| DNA-binding protein [Clostridium botulinum D str. 1873]
 gi|253561125|gb|EES90577.1| DNA-binding protein [Clostridium botulinum D str. 1873]
          Length = 179

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI E + ++     LT   LA +  L     ++ +R         PS  ++  IL     
Sbjct: 2  KIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLT-----SPSIATLVDILECLGT 56

Query: 68 TICQLLDLPF 77
           +    +   
Sbjct: 57 NLKDFFNNDE 66


>gi|239942360|ref|ZP_04694297.1| putative DNA-binding protein [Streptomyces roseosporus NRRL
          15998]
 gi|239988825|ref|ZP_04709489.1| putative DNA-binding protein [Streptomyces roseosporus NRRL
          11379]
          Length = 167

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA   G+     ++ +R       R PS + + +
Sbjct: 1  MASLNVGNLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERG-----LRKPSADVLQQ 55

Query: 61 ILAATNET 68
          +  A   +
Sbjct: 56 VAKALRIS 63


>gi|228474760|ref|ZP_04059491.1| helix-turn-helix domain protein [Staphylococcus hominis SK119]
 gi|228271423|gb|EEK12791.1| helix-turn-helix domain protein [Staphylococcus hominis SK119]
          Length = 200

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      ++   I  + +  N+T S L+ K G    + +  +        +    E   K
Sbjct: 1  MPENKPSQLGLIIKNIRKSKNMTQSKLSEKTGFSQNTISNHENGRRSIGEKE--VEKYAK 58

Query: 61 ILAATNETICQL 72
           L  T ++I   
Sbjct: 59 ALEVTKKSIYNH 70


>gi|188584169|ref|YP_001927614.1| XRE family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347667|gb|ACB83079.1| transcriptional regulator, XRE family [Methylobacterium populi
           BJ001]
          Length = 209

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60
           ++ + I R+ + +NL+ S LA ++G+  +  ++ +R           R       SI + 
Sbjct: 26  QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  +  E   +      +    ++  +  + ++ +  +     +       G    +   
Sbjct: 86  LATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADPGGVLESDAH 145

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145
                      ++       +    
Sbjct: 146 QRGSVE---SLSVLEGSFEVEVAGE 167


>gi|160875153|ref|YP_001554469.1| peptidase S24/S26 domain-containing protein [Shewanella baltica
           OS195]
 gi|160860675|gb|ABX49209.1| peptidase S24 and S26 domain protein [Shewanella baltica OS195]
 gi|315267346|gb|ADT94199.1| Peptidase S24/S26A/S26B, conserved region [Shewanella baltica
           OS678]
          Length = 135

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             S    +    +       +  SM  +    GDILI++       GD ++     G+ V
Sbjct: 26  GLSLDELLVVHPSATFIGVAKGDSMQGVGIFYGDILIVDRQETARHGDVIVANFN-GEFV 84

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
            K+L         L+S N  +    + +  +      ++
Sbjct: 85  CKILDKT---HRMLLSSNEQHQPQPIHDYDNFTIEGVVI 120


>gi|297162135|gb|ADI11847.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 101

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   + +       + + LAR+AG+   +  + +          PST ++ ++  A  +
Sbjct: 37 EIGRTVYQRRTELGWSQTELARRAGMTQPAIARLETSLT-----LPSTRTLLRVATALGQ 91

Query: 68 TIC 70
           + 
Sbjct: 92 PLH 94


>gi|261758784|ref|ZP_06002493.1| transcriptional regulator [Brucella sp. F5/99]
 gi|261738768|gb|EEY26764.1| transcriptional regulator [Brucella sp. F5/99]
          Length = 340

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 4  FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S +KI+    I R+     LT + +A   G+ P+  N  +R       R  + + + K+
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55

Query: 62 L 62
           
Sbjct: 56 A 56


>gi|229589612|ref|YP_002871731.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229361478|emb|CAY48354.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 65

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           ++      + + LA + G+   + N  +    +     P    I K+     E I +
Sbjct: 6  RQLRSELGWSQADLAERLGVSRQTINAIETGRYD--PSLPLAFKIAKVFERPIEGIFE 61


>gi|227874017|ref|ZP_03992229.1| DNA-binding protein [Oribacterium sinus F0268]
 gi|227840133|gb|EEJ50551.1| DNA-binding protein [Oribacterium sinus F0268]
          Length = 203

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
              KI + I    +   +T + LA K G+   + +K +    
Sbjct: 1  MDQIKIGKFIASCRKEEGMTQAELAEKLGISDRAVSKWETGKS 43


>gi|226361258|ref|YP_002779036.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226239743|dbj|BAH50091.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 470

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++     L+ + LA+   +  +  N+ +        R  +   + +I       
Sbjct: 6   VGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      +                P
Sbjct: 61  TTFFSSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHP 102


>gi|111019118|ref|YP_702090.1| DNA binding protein [Rhodococcus jostii RHA1]
 gi|110818648|gb|ABG93932.1| possible DNA binding protein [Rhodococcus jostii RHA1]
          Length = 470

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++     L+ + LA+   +  +  N+ +        R  +   + +I       
Sbjct: 6   VGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      +                P
Sbjct: 61  TTFFSSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHP 102


>gi|83859577|ref|ZP_00953097.1| predicted transcription regulator, containing DNA-binding
          HTHdomain [Oceanicaulis alexandrii HTCC2633]
 gi|83851936|gb|EAP89790.1| predicted transcription regulator, containing DNA-binding
          HTHdomain [Oceanicaulis alexandrii HTCC2633]
          Length = 75

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 3  SFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               +I   I  +      +T + LAR+ G+   +    ++         PS E  F+I
Sbjct: 1  MAKSTQIKNRIRELRFHAGEMTQAELARRIGVTRQTVLAIEQGKY-----SPSLEVAFQI 55

Query: 62 LAATNETICQLLDL 75
                 +  + + 
Sbjct: 56 AEVFKTPLTDVFEY 69


>gi|322382691|ref|ZP_08056546.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321153337|gb|EFX45770.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 110

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K++   I ++ E   LT   LA   G+  T+    +   +      P    +  
Sbjct: 1  MNEKEKKQMGLRIKKLREEKGLTQDELAEMLGMKRTNIANYEAGRVI-----PPGNVLRD 55

Query: 61 ILAATNET 68
          +      +
Sbjct: 56 LADIFAVS 63


>gi|313158570|gb|EFR57964.1| transcriptional regulator, y4mF family [Alistipes sp. HGB5]
          Length = 70

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+  AI    +   +T   LA  AG+   +  K +R         P+ E + KIL    
Sbjct: 5  DKVGNAIKERRKILKITQRTLAELAGVGINTLTKIERGEGN-----PTIEVLEKILDTLG 59


>gi|295107458|emb|CBL05001.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 79

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I  AI       NLT   LA + G+  ++F + +          P+ +++ ++     
Sbjct: 18 DIISAITMARAEQNLTQRELAERCGMRQSAFARLESGNAN-----PTLKTLQQVAKGLG 71


>gi|291560882|emb|CBL39682.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SSC/2]
          Length = 253

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S++K    +  + +  NLT   LA K  +   + +K +R         P+   +  
Sbjct: 1  MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 55

Query: 61 ILAATNETICQ 71
          I    + T+ +
Sbjct: 56 IADILDVTVTE 66


>gi|225387206|ref|ZP_03756970.1| hypothetical protein CLOSTASPAR_00958 [Clostridium asparagiforme
          DSM 15981]
 gi|225046685|gb|EEG56931.1| hypothetical protein CLOSTASPAR_00958 [Clostridium asparagiforme
          DSM 15981]
          Length = 88

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S   +  A+       NLT   LA + G+D    +K +        R PS   + ++   
Sbjct: 20 SELDVIRALVEARISQNLTQKELAARTGIDQADISKLENGT-----RNPSLNLLKRLADG 74

Query: 65 TNE 67
             
Sbjct: 75 MGM 77


>gi|162448051|ref|YP_001621183.1| XRE family transcriptional regulator [Acholeplasma laidlawii PG-8A]
 gi|161986158|gb|ABX81807.1| transcriptional regulator, XRE family [Acholeplasma laidlawii
           PG-8A]
          Length = 182

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 9/137 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I  +   +NLT   LA +  L     ++ +          PS +++F +L     
Sbjct: 3   DIGKKIRALRLGNNLTQEELANRLELTKGYISQLENNLT-----SPSIQTLFSLLEVLGV 57

Query: 68  TICQLLDLPFSDGRT---TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              +    P  +      T++   E        + S    ++  +        + +P  +
Sbjct: 58  ETHEFFSKPEGEDAKIVFTKEDFYEKENPDLGSTISWIVPNALKYEMEPIIIEI-MPGGQ 116

Query: 125 SPHNGIYAIQTQDTRHK 141
           S  +  +  +      +
Sbjct: 117 STIDDSHPGEEFGYVLE 133


>gi|160932607|ref|ZP_02079997.1| hypothetical protein CLOLEP_01449 [Clostridium leptum DSM 753]
 gi|156868566|gb|EDO61938.1| hypothetical protein CLOLEP_01449 [Clostridium leptum DSM 753]
          Length = 83

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            + + +  AI ++ E+  ++   ++  AG+  T  +  +R       R P+ E+ F++ 
Sbjct: 1  MLNAETVGAAIRQVREKKGISQEVVSSFAGIGRTHLSAIERGQ-----RKPTLETFFRLS 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKE 89
           A       L+     + +    K++E
Sbjct: 56 EALGMAASDLMREIEKEIQKENDKQEE 82


>gi|190015751|ref|YP_001967756.1| probable transcriptional regulator [Clostridium perfringens]
 gi|86450173|gb|ABC96282.1| probable transcriptional regulator [Clostridium perfringens]
          Length = 344

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 63/217 (29%), Gaps = 13/217 (5%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
           ++          +++K       FN+ KR      N     + + K    T +   +   
Sbjct: 110 KLRTERMFNELQMSKK--RTERMFNELKRTRNRAENDIKLFQELSKEFTNTLDKEHETDL 167

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS---PHNGIY 131
               + +             F  S       +  F   +    V            +   
Sbjct: 168 SDALEYQDINYNFSTTEKEDFLSSNLKDLISNLNFIPIDVVGEVSCGTPSYAFNEISKSI 227

Query: 132 AIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLIS 187
           A+ +        + +  SM  L++  +++I         GD ++       +      I 
Sbjct: 228 ALPSNYKDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC-KKIH 286

Query: 188 RRGRSIDLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222
           ++   ++L   +   Y +   +  SDI  I  ++  S
Sbjct: 287 KKKDKLELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 322



 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I    +++ L+ + LA K G+  T+    +R  +E          + K++  + +++  
Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYT--LVQLSKLMNRSIDSLLG 69

Query: 72 LLDLPFSDGRTTEKKEKEIPLL 93
          L     +          +   +
Sbjct: 70 LNHPNETTNDLNNSDLSKKIFI 91


>gi|297160908|gb|ADI10620.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 387

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          M   +H  I   + ++ +R  L+   LA  +G+  +   K ++  ++   
Sbjct: 1  MPEETH--IGARLRKIRKRRGLSQRDLAVASGVSLSLIRKLEQGTLDDTR 48


>gi|294648560|ref|ZP_06726027.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825548|gb|EFF84284.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 208

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 46/182 (25%), Gaps = 19/182 (10%)

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW- 115
           S+ +++    +    +  +        E  EK       P S           P G  + 
Sbjct: 16  SLQELMGPEGKPSPTINTVLEQIAVQNELVEKLGLTAVLPKSKVSIPVSLERIPAGPAFS 75

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
                 +    +  +               SML   +   D +I++ +I+    D ++  
Sbjct: 76  IKDEQDKALDLNEFLIHNPISTFIAYVDSESMLDAGFEINDPIIVDRSIEAKHYDIVIAL 135

Query: 175 PRTGDIVAKVL-----------ISRRGRS------IDLMSLNCCYPVDTVEMSDIEWIAR 217
                   K L               G        + L + N  Y       S    I  
Sbjct: 136 IDNSASTIKRLMITSKMSKSEIKEIFGDEDYPLPDLWLKAENPRYNHIIPNDSQTISIWG 195

Query: 218 IL 219
           ++
Sbjct: 196 VV 197


>gi|116249086|ref|YP_764927.1| putative aldehyde dehydrogenase-like protein [Rhizobium
          leguminosarum bv. viciae 3841]
 gi|115253736|emb|CAK12129.1| putative aldehyde dehydrogenase-like protein [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 182

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +   + L+   LA++ G+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGSRLRYLRIANKLSQRELAKRTGVPNSTISLIESNASN-----PSVGALKRILDGIPI 58

Query: 68 TICQLLDLPFSDGRTTE 84
           + +         R   
Sbjct: 59 GLAEFFAFEPERPRKAF 75


>gi|134298755|ref|YP_001112251.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051455|gb|ABO49426.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 77

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + ++ E  N +   L   + +  +S ++ ++       R P  E++ K+  A N +
Sbjct: 6  IGENVIKLREAKNWSQQDLEEASKVPQSSISRIEKGL----LRNPGVETVRKLATALNVS 61

Query: 69 ICQ 71
          + +
Sbjct: 62 VAE 64


>gi|303231632|ref|ZP_07318355.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
 gi|302513581|gb|EFL55600.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
          Length = 90

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I E I +     ++T + L+   G+  +  +K +          PS +++ KI  A  
Sbjct: 29 QIIENIVKARIEAHMTQTQLSEITGITQSDISKIENGNGN-----PSVKTLKKIAHAFG 82


>gi|295095877|emb|CBK84967.1| Predicted transcriptional regulators [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 175

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    H  +   +  + +    + S LA + G+      + +R         P+  +++K
Sbjct: 1   MDITQH--LATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNES-----SPTVSTLWK 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I    N      +          + +++ + +  L+           S     G    + 
Sbjct: 54  IATGLNVPFSAFITPESEPQAVFDPQQQAMVVKPLFPWDEQLKFDHFSITLSPGALSEST 113

Query: 119 GVPEIRSPH 127
                   H
Sbjct: 114 PHEAGVIEH 122


>gi|325680471|ref|ZP_08160020.1| nucleotide sugar dehydrogenase [Ruminococcus albus 8]
 gi|324107840|gb|EGC02107.1| nucleotide sugar dehydrogenase [Ruminococcus albus 8]
          Length = 501

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 9/179 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S + + E ++   +   +T + LA K G++    ++ +          PS E +  
Sbjct: 1   MKKLSIQLLAETVEGRRKSLKITQAQLAEKTGINRGLLSRLESQDFT-----PSIEQLQA 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A       +           +        +    +G  G   + +    N    V +
Sbjct: 56  LGEALGFEPTDMFV---EMSGVGKIAVDRSYRIAVAGTGYVGLSLAVLLAQHNDVTAVDI 112

Query: 121 PEIRSPHNGIYAIQ-TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
              +      Y      D   +  D +            ++ A      D ++I   T 
Sbjct: 113 IPEKVEKLNKYISPIQDDYIERYLDEAKKGRRELHLTATVDGASAYKDADFIIIAAPTN 171


>gi|119488949|ref|ZP_01621884.1| hypothetical protein L8106_19346 [Lyngbya sp. PCC 8106]
 gi|119454905|gb|EAW36048.1| hypothetical protein L8106_19346 [Lyngbya sp. PCC 8106]
          Length = 79

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 1  MTSFSH-KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M   +    I   +  + ER  L+   LA   G+   + N+ +R     +    +  +I 
Sbjct: 1  MPVTTPVSDIPNLVRTLRERLGLSQEKLAASLGVSFQTVNRWERGRA--KPSQLALNAIE 58

Query: 60 KILAATN 66
          + LA   
Sbjct: 59 QKLAEMG 65


>gi|15922405|ref|NP_378074.1| transcriptional regulator [Sulfolobus tokodaii str. 7]
 gi|15623194|dbj|BAB67183.1| 515aa long hypothetical transcriptional regulator [Sulfolobus
          tokodaii str. 7]
          Length = 515

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  + E+  ++ + LA+ AG+  ++  + +   I      P+  +++ I  A   T
Sbjct: 5  IGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKI-----SPNISTLWSIANALGVT 59

Query: 69 ICQLLDLP 76
            +L+   
Sbjct: 60 FGELITYD 67


>gi|23006264|ref|ZP_00048663.1| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase
          [Magnetospirillum magnetotacticum MS-1]
          Length = 216

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          ++   I    +   LT + LA + G   ++ ++ ++          S E + +I
Sbjct: 11 QVGALIRGARQNRGLTQTQLAERLGTSQSAVHRIEQGSQN-----LSLEMLNRI 59


>gi|312164184|gb|ADQ38323.1| transcriptional regulator [Azospirillum brasilense]
          Length = 75

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   + ++ E H L+   LA++AG+   + +  ++         PS  S+ K+L     
Sbjct: 9  NVGARLKQVREAHALSQRQLAQRAGVTNGTISLIEQNRC-----SPSVSSLRKVLQGIPM 63

Query: 68 TICQLLDLPF 77
          T+ +      
Sbjct: 64 TLAEFFSSDD 73


>gi|309777434|ref|ZP_07672392.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914830|gb|EFP60612.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 183

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            I ++ +   LT   +ARK  ++ T+ ++ +R         P  E + ++      +
Sbjct: 3  NRIRQVRKAKKLTQQDIARKLNINQTAISQWERGSTV-----PKNEKLIQLCEILETS 55


>gi|293115444|ref|ZP_05791516.2| DNA-binding protein [Butyrivibrio crossotus DSM 2876]
 gi|292809724|gb|EFF68929.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876]
          Length = 202

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 5/110 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                KI   I    +R   T   L+ K G+   + +K +R        +P    +  + 
Sbjct: 1   MMDQIKIGGFIAEERKRKGYTQKILSEKLGISDKTISKWERGNG-----FPEVSLLIPLC 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           +  + T+ +LL           KK +E  +     +             G
Sbjct: 56  SELDITVNELLSGERVSEEQYRKKAEENMVNLVKEAQENKKKIILSVMVG 105


>gi|260662345|ref|ZP_05863240.1| predicted protein [Lactobacillus fermentum 28-3-CHN]
 gi|260553036|gb|EEX25979.1| predicted protein [Lactobacillus fermentum 28-3-CHN]
          Length = 188

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          + + I + I R+ + +  T    A K      + +K +R         PST+S+  I   
Sbjct: 26 TGQIIGQNIRRLRKDNGYTQKQFAEKLETIEQTVSKIERGVF-----SPSTDSLMNICTI 80

Query: 65 TNETICQLL 73
             T   L+
Sbjct: 81 FGVTPNDLM 89


>gi|302540449|ref|ZP_07292791.1| cro/CI family transcriptional regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458067|gb|EFL21160.1| cro/CI family transcriptional regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 196

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 16/139 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  +  K+  A  
Sbjct: 15  QSLARNLKRWRNERGYTLDALAARAGVSRGMIIQIEQARTN-----PSVGTTVKLADALG 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSGVFPTGNKW 115
            +I  LLD            E+ + +                +             G+  
Sbjct: 70  VSITTLLDYEQEARVRLVPPEQAVRMWSTEAGSHTVLLVGTEARGPLELWDWRLMPGDGS 129

Query: 116 NTVGVPEIRSPHNGIYAIQ 134
           ++   P        + A +
Sbjct: 130 SSDPHPAGTFELLRVTAGE 148


>gi|229496507|ref|ZP_04390221.1| putative transcriptional regulator [Porphyromonas endodontalis ATCC
           35406]
 gi|229316404|gb|EEN82323.1| putative transcriptional regulator [Porphyromonas endodontalis ATCC
           35406]
          Length = 180

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 5/115 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  +I + +  M E   +T    A +AG+ P +F+++     +     PS  ++ KI   
Sbjct: 20  TIDQITQRLRYMMESLGMTAKTFAEQAGIPPATFSQTLENRNK-----PSLSTLLKIANG 74

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
             E     +     + R    K +E   L                     W    
Sbjct: 75  FPEWNPTWIIFGQGEERMEISKNREGLFLENSFGEGVDTSVYQKNTNLKSWENSE 129


>gi|291288546|ref|YP_003505362.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290885706|gb|ADD69406.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 79

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          + +AI        LT S LA K GL   + +  +      +
Sbjct: 11 LGQAIKAARLEAKLTQSQLAEKTGLRQGTISDIENGTQRAK 51


>gi|322376588|ref|ZP_08051081.1| putative transcriptional regulator [Streptococcus sp. M334]
 gi|321282395|gb|EFX59402.1| putative transcriptional regulator [Streptococcus sp. M334]
          Length = 158

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 6/134 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHK 141
           +  Y I T     +
Sbjct: 117 DLSYLIHTNIYLVE 130


>gi|312130063|ref|YP_003997403.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM
           17132]
 gi|311906609|gb|ADQ17050.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM
           17132]
          Length = 255

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 5/128 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  +  R  LT   LA   G++  +    +          P  + + ++ +    +
Sbjct: 4   VNENIKVLRNRMGLTQEKLAALLGINRKAVGSYEENRAT-----PPLDKLNRLASLFGVS 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + QL+   FS      +++                 +     +   W    +P I   + 
Sbjct: 59  MDQLIHHRFSTESPLFEEQAPEVPTEVVKEAPALIVEKKKPFSRTAWIDEAIPYISYKYF 118

Query: 129 GIYAIQTQ 136
             Y +   
Sbjct: 119 DKYILDED 126


>gi|262376108|ref|ZP_06069339.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262309202|gb|EEY90334.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 107

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + ++  LT   LA K+G+  TS +  +       +R PS E+ +K++   N +  
Sbjct: 12 ARLKEIRKQRKLTQQELAEKSGIPSTSISHIEAG-----SRKPSLENFYKLVIVLNVSAD 66

Query: 71 QLLDLPFSDGRTTEKKEKEIPLL 93
           LL               +    
Sbjct: 67 YLLGRTERSSDVGNDPIAKSIQE 89


>gi|253583791|ref|ZP_04860989.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834363|gb|EES62926.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 168

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 20/39 (51%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          K++  I ++ +++ ++   LA+  G+   S +K +    
Sbjct: 2  KLFVKIQQLRKQNGMSQEKLAQLLGVSKQSVSKWESGQS 40


>gi|300768439|ref|ZP_07078339.1| XRE family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|300493957|gb|EFK29125.1| XRE family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
          Length = 133

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 11 EAIDRMAE-RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          E +  + +    LT   LA + G+  T+    ++       R P  E++ KI    
Sbjct: 17 ERLKELRKKEAGLTQERLAMQLGMAKTTLASYEQG-----KRQPDLETLSKIADRF 67


>gi|255655987|ref|ZP_05401396.1| putative phage regulatory protein [Clostridium difficile
          QCD-23m63]
 gi|296450586|ref|ZP_06892339.1| probable phage regulatory protein [Clostridium difficile NAP08]
 gi|296879295|ref|ZP_06903290.1| probable phage regulatory protein [Clostridium difficile NAP07]
 gi|296260430|gb|EFH07272.1| probable phage regulatory protein [Clostridium difficile NAP08]
 gi|296429838|gb|EFH15690.1| probable phage regulatory protein [Clostridium difficile NAP07]
          Length = 123

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + I  + +  ++    LA K G+   S ++ +        R P +E I ++  A  
Sbjct: 2  ESLGDRIANLRKELDINQKELATKVGITEASLSRYENN-----LREPKSEIIVRLAKALE 56

Query: 67 ET 68
           +
Sbjct: 57 TS 58


>gi|167839985|ref|ZP_02466669.1| DNA-binding protein [Burkholderia thailandensis MSMB43]
          Length = 95

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+    +   AI ++ E    +   LA  AGL+ +   + +R          S  ++ K
Sbjct: 1  MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54

Query: 61 ILAATN 66
          +  A  
Sbjct: 55 LARAFG 60


>gi|317054659|ref|YP_004119726.1| UmuD [Escherichia coli]
 gi|119434067|gb|ABL75134.1| UmuD-like protein [Acinetobacter baumannii]
 gi|284433188|gb|ADB84927.1| UmuD [Escherichia coli]
          Length = 142

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
            + +   P   I    +     +    S++      GD++ ++ + +   G  +L     
Sbjct: 33  DLEDEIDPIAWIVPHPSATFWWRVSGDSLVDEGIHDGDLIAVDRSGKARVGRIVLAVVD- 91

Query: 178 GDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G I  K L  R G+  +D  S    Y    +     E    I
Sbjct: 92  GSITLKKLAKRDGQYWLDPKSKGNNYQPIRIT-DQTEIWGVI 132


>gi|139439103|ref|ZP_01772555.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC
          25986]
 gi|133775450|gb|EBA39270.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC
          25986]
          Length = 127

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 5/76 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + +  + +  + + LA    +D  +    +R         P  E ++K     +     L
Sbjct: 5  LKQARKENGYSQADLADALNVDIKTVGNWERGKT-----LPDIEQLWKCAKILHTDPNDL 59

Query: 73 LDLPFSDGRTTEKKEK 88
          L               
Sbjct: 60 LGWYEEHPEDRPTVPA 75


>gi|28377505|ref|NP_784397.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1]
 gi|28270337|emb|CAD63238.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1]
          Length = 120

 Score = 46.7 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 11 EAIDRMAE-RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          E +  + +    LT   LA + G+  T+    ++       R P  E++ KI    
Sbjct: 4  ERLKELRKREAGLTQERLAMQLGMAKTTLASYEQG-----KRQPDLETLSKIADRF 54


>gi|332687060|ref|YP_004456834.1| MerR family transcriptional regulator [Melissococcus plutonius ATCC
           35311]
 gi|332371069|dbj|BAK22025.1| transcriptional regulator, MerR family, near polyamine transporter
           [Melissococcus plutonius ATCC 35311]
          Length = 180

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +  +  + +LT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGDRLRNLRIQRDLTQEELGERTDLTKGYISQLERNLS-----SPSMETFFTILEVLGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           +  +  +    + +   + +             
Sbjct: 57  SPEEFFNEQTMEQKIVYQDKDNTHYYDEENGYE 89


>gi|331090730|ref|ZP_08339577.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330399838|gb|EGG79497.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 156

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
             H+ I + I    +   LT   LA   G+   S ++ +    
Sbjct: 1  MNQHE-IGDFISCCRKEKGLTQVELAEMLGVSDKSISRWENAKT 43


>gi|331268528|ref|YP_004395020.1| DNA-binding protein [Clostridium botulinum BKT015925]
 gi|329125078|gb|AEB75023.1| DNA-binding protein, putative [Clostridium botulinum BKT015925]
          Length = 185

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 12/139 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E + ++     LT   LA +  L     ++ +R         PS  ++  IL     
Sbjct: 8   KIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLT-----SPSIATLVDILECLGT 62

Query: 68  TICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +    +    +            +  +    + +    +       +  T         
Sbjct: 63  NLKDFFNDEEEEKIVFSKEDIFESEDSELNYKVQWVIPNAQKNMMEPILLTLESNGQYKN 122

Query: 121 PEIRSPHNGIYAIQTQDTR 139
            E        Y +      
Sbjct: 123 DEPHEGEEFGYVLAGTIYI 141


>gi|308067920|ref|YP_003869525.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305857199|gb|ADM68987.1| Transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 122

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + E   L    LA+  G+   + +  ++       R P  E + K+      TI
Sbjct: 4  GSRIAELREHKGLKQEELAQSLGITRAALSHYEKN-----RRKPDFEILTKLADIFGVTI 58

Query: 70 CQLLDLPFSDGRTTEKKEKEI 90
            L+          +   +E 
Sbjct: 59 DYLVGRTSHPAAILDSDVREF 79


>gi|291531329|emb|CBK96914.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 168

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 7/99 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + +KI E +  + +   LT   LA    +   + ++ +          P  + + ++  
Sbjct: 1   MNQQKIGEFLKYLRKNKGLTQEQLAEHFCVSSRTVSRWENGNN-----MPDIDILIELAD 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
                I +   +          K+ +  ++      + G
Sbjct: 56  FYEVDIRE--LIDGERKSENMDKKTKETVIKAAEYMNMG 92


>gi|291299515|ref|YP_003510793.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568735|gb|ADD41700.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 388

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 6/132 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + +  +    +   LA + G++ ++  + +    E +  W       K+  A   T  
Sbjct: 6   SRLAQRRKAAGFSQEKLAERLGVERSTVVRWETAETEPQP-WLRL----KLAQALGITTD 60

Query: 71  QLLD-LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            L   L   +  T    ++   +L  P S                  +       +    
Sbjct: 61  DLHVLLDDVEYVTAGPSDRMDYVLEHPASVDLVAVAYLHERVRQLDESYDRSPSTALLGP 120

Query: 130 IYAIQTQDTRHK 141
              I  Q    +
Sbjct: 121 AGQIHGQVAFLR 132


>gi|228945433|ref|ZP_04107787.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228814236|gb|EEM60503.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 181

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   LT   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|289582562|ref|YP_003481028.1| XRE family transcriptional regulator [Natrialba magadii ATCC
          43099]
 gi|289532115|gb|ADD06466.1| transcriptional regulator, XRE family [Natrialba magadii ATCC
          43099]
          Length = 79

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +    E   L+   LA    +   + N  +R   +     PS E  FK+ A     I +L
Sbjct: 5  LTERREEAGLSQGDLAEAVDVTRQTINAIERERYD-----PSLELAFKLAAFFECHIEEL 59

Query: 73 LDLP 76
           +  
Sbjct: 60 FEPD 63


>gi|330447342|ref|ZP_08310991.1| helix-turn-helix family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491533|dbj|GAA05488.1| helix-turn-helix family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 213

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 54/215 (25%), Gaps = 12/215 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I R+A+   ++   L     L   + ++          R      + KI    N + 
Sbjct: 4   LERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRE-----LEKIAETLNTS- 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              +     D  T         L                F      ++V V   R+    
Sbjct: 58  IGYILTGQVDTGTQATTTISTELDNAATCTYIPVIHRKDFSAYTDGSSVEVISKRAIPQ- 116

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +  + +       + ++      G   +     +      +    R  +     +    
Sbjct: 117 -HLEREECLGLLIDNENIAQCAPVGSYALATKKAEYRPKQPVFASVRGSEPDFYHMTQLA 175

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221
              +   S    +P   V   + +    I+   WA
Sbjct: 176 DGVVFSTSQ-PDFPNLFVNNDEFQIHGYIIQSDWA 209


>gi|325524150|gb|EGD02302.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 95

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +A+        L+ + +A + G    +  + +R    G+   PS E++ K  AA  
Sbjct: 31 LLDAMLAARRAAGLSQADVAERMGTKAPAVTRLERSLATGQ-HSPSIETLRKYAAACG 87


>gi|302542605|ref|ZP_07294947.1| signal peptidase [Streptomyces hygroscopicus ATCC 53653]
 gi|302460223|gb|EFL23316.1| signal peptidase [Streptomyces himastatinicus ATCC 53653]
          Length = 144

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198
           +  + SM P    GD L++   + V  GD ++++   R   ++ K  + RR     +M  
Sbjct: 3   EVYNPSMQPSLYPGDQLVVRYRVPVRPGDVVVLRHPFRQDLLIVKRAVERREGGWWVMGD 62

Query: 199 NCC 201
           N  
Sbjct: 63  NPD 65


>gi|241765791|ref|ZP_04763733.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
 gi|241364329|gb|EER59474.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
          Length = 87

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 10/71 (14%)

Query: 1  MTSFSHK-----KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          M S SH      ++   +    +   LT S LA + GL  +  +  +           S 
Sbjct: 1  MASTSHPLVTAGQLGTVLQAARKAQGLTQSALASRVGLSQSRVSHLELNA-----HELSV 55

Query: 56 ESIFKILAATN 66
          E +    AA  
Sbjct: 56 EQLLAWCAALG 66


>gi|207721990|ref|YP_002252428.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2]
 gi|206587163|emb|CAQ17747.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2]
          Length = 209

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 5/97 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA + G+  +  +  +R         P+   + K+ A  
Sbjct: 17  NERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAA-----SPTAAVLDKLAAGL 71

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
             ++  L               +     +  P     
Sbjct: 72  GISLASLFGGEREGMPAQPLMRRAQQTQWRDPESGYV 108


>gi|126699634|ref|YP_001088531.1| putative phage regulatory protein [Clostridium difficile 630]
 gi|254975609|ref|ZP_05272081.1| putative phage regulatory protein [Clostridium difficile
          QCD-66c26]
 gi|255092997|ref|ZP_05322475.1| putative phage regulatory protein [Clostridium difficile CIP
          107932]
 gi|255101147|ref|ZP_05330124.1| putative phage regulatory protein [Clostridium difficile
          QCD-63q42]
 gi|255307021|ref|ZP_05351192.1| putative phage regulatory protein [Clostridium difficile ATCC
          43255]
 gi|255314738|ref|ZP_05356321.1| putative phage regulatory protein [Clostridium difficile
          QCD-76w55]
 gi|255517412|ref|ZP_05385088.1| putative phage regulatory protein [Clostridium difficile
          QCD-97b34]
 gi|255650522|ref|ZP_05397424.1| putative phage regulatory protein [Clostridium difficile
          QCD-37x79]
 gi|260683623|ref|YP_003214908.1| putative phage regulatory protein [Clostridium difficile CD196]
 gi|260687283|ref|YP_003218417.1| putative phage regulatory protein [Clostridium difficile R20291]
 gi|306520479|ref|ZP_07406826.1| putative phage regulatory protein [Clostridium difficile
          QCD-32g58]
 gi|115251071|emb|CAJ68902.1| Transcriptional regulator, HTH-type [Clostridium difficile]
 gi|260209786|emb|CBA63606.1| putative phage regulatory protein [Clostridium difficile CD196]
 gi|260213300|emb|CBE04858.1| putative phage regulatory protein [Clostridium difficile R20291]
          Length = 123

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + I  + +  ++    LA K G+   S ++ +        R P +E I ++  A  
Sbjct: 2  ESLGDRIANLRKELDINQKELATKVGITEASLSRYENN-----LREPKSEIIVRLAKALE 56

Query: 67 ET 68
           +
Sbjct: 57 TS 58


>gi|257437962|ref|ZP_05613717.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257199622|gb|EEU97906.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 94

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I  A+       NLT   LA + G++    +K +        R PS + + ++      
Sbjct: 22 DIIRAMADARISQNLTQKELAERTGINQADISKLENGT-----RNPSLKLLKRLADGMGM 76

Query: 68 TICQLLDLPFSDG 80
           +  +        
Sbjct: 77 DLKLVFTPKEPQN 89


>gi|289579057|ref|YP_003477684.1| XRE family transcriptional regulator [Thermoanaerobacter italicus
          Ab9]
 gi|289528770|gb|ADD03122.1| transcriptional regulator, XRE family [Thermoanaerobacter
          italicus Ab9]
          Length = 182

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +  + +   LT   +    G+   ++ K ++   E     PS ES+ KI      +
Sbjct: 2  IGDRLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAE-----PSIESLIKIADYFQVS 56


>gi|169631196|ref|YP_001704845.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC
           19977]
 gi|169243163|emb|CAM64191.1| Probable transcriptional regulatory protein [Mycobacterium
           abscessus]
          Length = 476

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGGRLRQLRSERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    S      ++  +   L      +         P 
Sbjct: 61  ATFFSSQDDSRLIAELREVVQDKDLDIDVDPAEIADVVAGHPA 103


>gi|167767712|ref|ZP_02439765.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1]
 gi|240145134|ref|ZP_04743735.1| DNA-binding protein [Roseburia intestinalis L1-82]
 gi|317497495|ref|ZP_07955815.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|167710451|gb|EDS21030.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1]
 gi|257202808|gb|EEV01093.1| DNA-binding protein [Roseburia intestinalis L1-82]
 gi|291558919|emb|CBL37719.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SSC/2]
 gi|316895281|gb|EFV17443.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 252

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +++K    +  + +   +T   LA K  +   + +K +R         P+   +  
Sbjct: 1  MYQINNEKFGHFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNS-----MPNVTLLIP 55

Query: 61 ILAATNETICQ 71
          I      T+ +
Sbjct: 56 IADVLGITVTE 66


>gi|118444657|ref|YP_877308.1| DNA-binding protein [Clostridium novyi NT]
 gi|118135113|gb|ABK62157.1| DNA-binding protein, putative [Clostridium novyi NT]
          Length = 185

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 34/139 (24%), Gaps = 12/139 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E + ++     LT   LA +  L     ++ +R         PS  ++  IL     
Sbjct: 8   NIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLT-----SPSIATLVDILECLGT 62

Query: 68  TICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +    +    +            +  +    + +    +       +  T         
Sbjct: 63  NLKDFFNNDEEEKIVFSKEDIFEAEDTELNYNVQWVIPNAQKNMMEPILVTLEPNGQYKN 122

Query: 121 PEIRSPHNGIYAIQTQDTR 139
            E        Y +      
Sbjct: 123 DEPHEGEEFGYVLAGTVYI 141


>gi|91216775|ref|ZP_01253739.1| transcriptional regulator, XRE family protein [Psychroflexus
          torquis ATCC 700755]
 gi|91184936|gb|EAS71315.1| transcriptional regulator, XRE family protein [Psychroflexus
          torquis ATCC 700755]
          Length = 102

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I  AI +  +  NLT + L    G+  +  +K +    + R      E+I K+  A N
Sbjct: 39 IGNAIKQARKERNLTQTQLGELVGVQKSQISKLENHLTDAR-----FETILKVFKALN 91


>gi|332706948|ref|ZP_08427008.1| putative transcriptional regulator, CBS domain family [Lyngbya
          majuscula 3L]
 gi|332354213|gb|EGJ33693.1| putative transcriptional regulator, CBS domain family [Lyngbya
          majuscula 3L]
          Length = 93

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H  I   + ++ ++  LT   LA   G+   + +  +R  ++ +  +  T+ + + L  T
Sbjct: 5  HHDI--TLLKLRQQVGLTQRELAEALGVTQKTISIWERGKMQPKLSFWQTKLMMEKLNCT 62

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
           + +    +L   +    +  +       F
Sbjct: 63 LDQLIIATELKHQNHNEIKSTKIRPHNPRF 92


>gi|309777464|ref|ZP_07672419.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914778|gb|EFP60563.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 118

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + ++  L+   LA   G+  +  +  ++         PS + + ++    N  
Sbjct: 9  IGGKIKDLRKQRGLSQKELASSIGISASFLSDIEKERSN-----PSFDKLQRLCVVLNVQ 63

Query: 69 ICQLLDLPFSD 79
              L    + 
Sbjct: 64 PGYFLSHENTY 74


>gi|308068009|ref|YP_003869614.1| hypothetical protein PPE_01233 [Paenibacillus polymyxa E681]
 gi|305857288|gb|ADM69076.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 124

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/116 (11%), Positives = 35/116 (30%), Gaps = 6/116 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I+  I+ + +   +T     ++ G+   +F   KR         P T  + +I +  +
Sbjct: 2   QSIYHRIEELIKERGMTKKAFCQQLGISTGNFGDWKRGKTT-----PGTNKLIEIASFFD 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            ++  ++      G   ++ +              G   S           +    
Sbjct: 57  ASLDWIMLGRDVQGEVLKESQDPYFFEASGQLNCQGEPLSEAERN-FILEYIEFTR 111


>gi|258404526|ref|YP_003197268.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257796753|gb|ACV67690.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 135

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 6/102 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I+R+  +  LT + LA K G+      K  R          S +++ K+ +A     C  
Sbjct: 36  INRIMCKEGLTKAELADKMGVSRPYITKLLRGTNV------SLQTLAKVASALGYKTCIS 89

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +     + R                +     F          
Sbjct: 90  MIPKHWEARVFAVSPVNKQRQGDRRARFADGFREKEGYAYAG 131


>gi|221070070|ref|ZP_03546175.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
 gi|220715093|gb|EED70461.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
          Length = 104

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +H  + E I    +   L+   LA+ A +  ++ ++ +     G  R    +++ ++  
Sbjct: 1  MTH--LGERIRARRQALGLSQGRLAQMADVTASAISQIE----SGAIRTLKNDTLARLAI 54

Query: 64 ATNETICQLL 73
          A   T  +L+
Sbjct: 55 ALQTTALELM 64


>gi|254431374|ref|ZP_05045077.1| LexA repressor, putative [Cyanobium sp. PCC 7001]
 gi|197625827|gb|EDY38386.1| LexA repressor, putative [Cyanobium sp. PCC 7001]
          Length = 132

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           P        +          +    SM       GD+LI++  ++   G  +++      
Sbjct: 28  PVAIDLQRLLLPDPRGCLLLRVAGESMRDAGIHHGDLLIVDRRLEPRPG-LVVVALLEEG 86

Query: 180 IVAKVLISRRGRSIDLMSL 198
              K L  R G  + L + 
Sbjct: 87  FTVKRLAGR-GTRLWLEAA 104


>gi|111221785|ref|YP_712579.1| putative DNA-binding protein [Frankia alni ACN14a]
 gi|111149317|emb|CAJ61003.1| putative DNA-binding protein [Frankia alni ACN14a]
          Length = 500

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +   +  + E   ++   LAR  G+ P+  N+ +       +R  +   + +I  A  
Sbjct: 6  VGTRLRELREERAMSQVELARLLGISPSYLNQIEHN-----SRPLTVPVLLRITEAFG 58


>gi|323487530|ref|ZP_08092823.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum
           WAL-14163]
 gi|323399131|gb|EGA91536.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum
           WAL-14163]
          Length = 375

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 8/100 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       I   I R      +T + LA   G+   S +K +         +P    +  
Sbjct: 1   MKEL---NIARQIIRKRRERGITQAALAAHMGVSKASVSKWETGQS-----YPDITLLPG 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           + +  N +I +L+           ++        F    +
Sbjct: 53  LASYFNMSIDELMGCSMQMTEEEIQELFSRLAREFSQENA 92


>gi|302520148|ref|ZP_07272490.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|333026104|ref|ZP_08454168.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|302429043|gb|EFL00859.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|332745956|gb|EGJ76397.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 120

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S     + E +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MVSLDVGGLGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEILQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L             + +   +L
Sbjct: 56 LAKALRISAETLYVQAGILDERERAEAETRAVL 88


>gi|298693687|gb|ADI96909.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus ED133]
 gi|302332086|gb|ADL22279.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus JKD6159]
          Length = 67

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R  L  + LA+ AG+   + +  +R         PS  +  KI    NET+ 
Sbjct: 3  NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57

Query: 71 QLLDLPF 77
           +  +  
Sbjct: 58 TIFIIEE 64


>gi|296269837|ref|YP_003652469.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296092624|gb|ADG88576.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 490

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 3  SFSHK-KIWE---AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          S +H+  +      +  + ++  LT + LA + G  P+  +  +        R P    +
Sbjct: 11 SLTHELDLLAFGQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENG-----KREPKLSLL 65

Query: 59 FKILAATNETICQ 71
            +  A N  + +
Sbjct: 66 KSLATALNVPVEE 78


>gi|295106679|emb|CBL04222.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 76

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I  +     ++    A   G+  + F + +        R  +  ++ KI      
Sbjct: 9  KIGLRIKELRAERGVSQEEFANLIGMSRSYFGEVETG-----KRNVAAVNLEKIAKGLGV 63

Query: 68 TICQLLD 74
          ++ +  D
Sbjct: 64 SLAEFFD 70


>gi|293602468|ref|ZP_06684914.1| XRE family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
 gi|292819230|gb|EFF78265.1| XRE family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
          Length = 91

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+     I E +    +   L+   +AR+A +  T+  + +           S  ++ +
Sbjct: 7  MTTLG--DIAEMLRAARKESGLSQEEMARRADVARTTLTRMENLARN----DMSVSALVR 60

Query: 61 ILAATNET 68
          +L A    
Sbjct: 61 LLEAAGYD 68


>gi|251811388|ref|ZP_04825861.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805137|gb|EES57794.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|319399894|gb|EFV88140.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909]
 gi|320142644|gb|EFW34450.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 108

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + ++HN T   LA K      + +K ++   E     P    + ++    + +
Sbjct: 2   ISKQIKDLRKQHNYTQEELAEKLNTSRQTISKWEQGISE-----PDLIMLMQLSQLFSVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
              L+    +  +   K   E+    F            +   G  
Sbjct: 57  TDYLITGSDNIIKKDNKSYYEMNFWAFMSEKWWVIIIIVIIICGTI 102


>gi|158333704|ref|YP_001514876.1| peptidase S26 family protein [Acaryochloris marina MBIC11017]
 gi|158303945|gb|ABW25562.1| peptidase S26 family protein, putative [Acaryochloris marina
           MBIC11017]
          Length = 102

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 141 KTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGD--IVAKVLISRRGRSID 194
           + Q  SM+P    GD ++++           GD +L +        + K + S    S  
Sbjct: 12  EVQGRSMMPTLSPGDQVLIDPRAYRLTTPQVGDIVLARHPFQSQLYLIKRIQSVDDNSYF 71

Query: 195 LMSLN 199
           L+  N
Sbjct: 72  LIGDN 76


>gi|76799152|ref|ZP_00781336.1| transcription regulator [Streptococcus agalactiae 18RS21]
 gi|76799661|ref|ZP_00781770.1| transcription regulator [Streptococcus agalactiae 18RS21]
 gi|76584989|gb|EAO61638.1| transcription regulator [Streptococcus agalactiae 18RS21]
 gi|76585504|gb|EAO62078.1| transcription regulator [Streptococcus agalactiae 18RS21]
          Length = 97

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I +      LT   +A K G+    + + +  G     R P  E++ K+      +
Sbjct: 2  LKDNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGG-----RNPKDETVEKLAEIFGTS 56


>gi|125973269|ref|YP_001037179.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC
           27405]
 gi|256003748|ref|ZP_05428736.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM
           2360]
 gi|281417471|ref|ZP_06248491.1| transcriptional regulator, XRE family [Clostridium thermocellum
           JW20]
 gi|125713494|gb|ABN51986.1| transcriptional regulator, XRE family with cupin sensor
           [Clostridium thermocellum ATCC 27405]
 gi|255992309|gb|EEU02403.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM
           2360]
 gi|281408873|gb|EFB39131.1| transcriptional regulator, XRE family [Clostridium thermocellum
           JW20]
 gi|316940499|gb|ADU74533.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum
           DSM 1313]
          Length = 179

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 62/217 (28%), Gaps = 46/217 (21%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I ++   + +T   LA +A L     ++ +          PS  ++  IL     
Sbjct: 2   QIGAKIRQLRIANQMTQEELADRAELSKGFISQIENDLT-----SPSINTLVDILQCLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +                                  F    + +          E   P+
Sbjct: 57  DLKTFFSDSEDK---------------------QIVFREKDYFSKTDNELKNTIEWVVPN 95

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
           +   A++      +    S+     +G+    ++  +I+V+ G+                
Sbjct: 96  SQKNAMEPIRMTLQPGGRSLEDHPHEGEEFGYVVKGSIEVHIGNECYRVN---------- 145

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
               G S    S    Y    V + + +  A+++W S
Sbjct: 146 ---EGESFYFESTRKHY---IVNVGESD--AQVIWVS 174


>gi|326204709|ref|ZP_08194564.1| Cupin 2 conserved barrel domain protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325985080|gb|EGD45921.1| Cupin 2 conserved barrel domain protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 179

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I ++  ++ LT   LA +  L     ++ +R         PS  ++  IL +   
Sbjct: 2  NIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLT-----SPSIATLIDILESLGT 56

Query: 68 TICQLLD 74
           I    +
Sbjct: 57 NIKDFFN 63


>gi|297162420|gb|ADI12132.1| putative transcriptional regulator, XRE family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 196

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/176 (8%), Positives = 42/176 (23%), Gaps = 17/176 (9%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                 +   +  +     LT   LA  A +  +  +  +R       + P+   + +I 
Sbjct: 1   MLDLLTLGTRVQGLRHERGLTLQQLADAAEVSVSMLSSVERGQ-----KAPTVLVLARIA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GV 120
                 + +L+  P        +   +  +      G            G  +  +   +
Sbjct: 56  DGLGVPLAELVAEPEDSRVIVRRAADQDTVE---EPGGWRRTILTPVVPGVNFEWIRTTL 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           P                     +  ++               + ++ GD +     
Sbjct: 113 PPGCDAGRFPAYAPGSHEFVVVESGTLRLTLAG-------RTVDLDAGDSVYFAAD 161


>gi|293374278|ref|ZP_06620606.1| toxin-antitoxin system, antitoxin component, Xre family
          [Turicibacter sanguinis PC909]
 gi|292647111|gb|EFF65093.1| toxin-antitoxin system, antitoxin component, Xre family
          [Turicibacter sanguinis PC909]
          Length = 119

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + ++     LT   LA K  +  ++ +  +        R P TE++ K     N
Sbjct: 2  LGKRLKQLRNSAGLTQKELANKMNISSSAVSMYE-----ADRRDPDTETLVKFSKVFN 54


>gi|293400046|ref|ZP_06644192.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306446|gb|EFE47689.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 134

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I    + + LT   L    G       + +        R P  E++ KI  A N 
Sbjct: 8  DIKDKIKSYRKSNGLTQKQLGEMIGSSEGMIRQYELG-----LRNPKMETLTKIANALNI 62

Query: 68 TICQLLDLPFS 78
           +   + L   
Sbjct: 63 NLFDFVPLAEW 73


>gi|239636398|ref|ZP_04677400.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri
          L37603]
 gi|239597753|gb|EEQ80248.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri
          L37603]
          Length = 179

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   +  + +  NLT   LA +  L     ++ +          PS E+   IL     
Sbjct: 2  EIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNA-----SPSMETFLNILEVLGT 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          +               +K+E+ I   Y 
Sbjct: 57 SASDFFKETEQQKVIYKKEEQVIYDEYD 84


>gi|228975724|ref|ZP_04136261.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228784000|gb|EEM32042.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
          Length = 142

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + ++ NLT   LA K G+        +        R+P  + + K+    + +
Sbjct: 2  IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCFSVS 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93
             LL    +D    +   K+   +
Sbjct: 57 ADYLLGRSVTDEPNEQVTPKDEKDI 81


>gi|254518274|ref|ZP_05130330.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912023|gb|EEH97224.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 110

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + +   L+  GLA   G+   S  K +      +  +P  + + ++      +I 
Sbjct: 8  EKLQGLRKEKGLSQEGLAELVGVSRQSVAKWES-----KKSYPEVDKLVQLSNVFGVSID 62

Query: 71 QLLDLPFSDG 80
          +LL     + 
Sbjct: 63 KLLKNIEEEC 72


>gi|255100685|ref|ZP_05329662.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
          Length = 44

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
            KI + I R+ +  NLT   LA+  G+   + +K +    
Sbjct: 2  QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGVS 42


>gi|218440552|ref|YP_002378881.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218173280|gb|ACK72013.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 87

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
              +I + I  + +  NLT    A   G+  T+ N+ ++       
Sbjct: 9  LPQPEIGKLIRNLRQEMNLTQEQFAMMVGVVFTTVNRWEKGHANPSP 55


>gi|229514886|ref|ZP_04404346.1| hypothetical protein VCB_002537 [Vibrio cholerae TMA 21]
 gi|229521557|ref|ZP_04410976.1| hypothetical protein VIF_002094 [Vibrio cholerae TM 11079-80]
 gi|229525929|ref|ZP_04415334.1| hypothetical protein VCA_003576 [Vibrio cholerae bv. albensis
          VL426]
 gi|297579049|ref|ZP_06940977.1| fumarate reductase flavoprotein subunit [Vibrio cholerae RC385]
 gi|229339510|gb|EEO04527.1| hypothetical protein VCA_003576 [Vibrio cholerae bv. albensis
          VL426]
 gi|229341655|gb|EEO06658.1| hypothetical protein VIF_002094 [Vibrio cholerae TM 11079-80]
 gi|229347591|gb|EEO12550.1| hypothetical protein VCB_002537 [Vibrio cholerae TMA 21]
 gi|297536643|gb|EFH75476.1| fumarate reductase flavoprotein subunit [Vibrio cholerae RC385]
          Length = 151

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  M E+  L  S +A   G+ P ++ K +    E     P   +I K+      +  +L
Sbjct: 9  LKEMREKAGLKQSEVAEYVGVTPQTYMKWENGKNE-----PKASNIKKLAEILKVSETEL 63

Query: 73 LDLPFSDGRTTEKKEKEIPLLYF 95
                       +  +    Y 
Sbjct: 64 CRGERFHKEDNPIEFMKKVAQYI 86


>gi|317120863|ref|YP_004100866.1| hypothetical protein Tmar_0014 [Thermaerobacter marianensis DSM
          12885]
 gi|315590843|gb|ADU50139.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM
          12885]
          Length = 131

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 5/84 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +  + + +M E   LT   LA   G+   +    +        R P   +I K+      
Sbjct: 2  QFADRLRKMREARGLTQRELATAIGVSRQAIGLYEAGE-----REPDLTTIQKLAHVLRT 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIP 91
          +I  L+                  
Sbjct: 57 SISYLVGETDDPSPLPRSGVAAHR 80


>gi|307330189|ref|ZP_07609338.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306884209|gb|EFN15246.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 190

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 1  MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          MT      + +   + R       T   LA +AG+      + ++         PS  + 
Sbjct: 1  MTDLDQLTQSLARNLKRCRNERGFTLDALAARAGVSRGMIIQIEQARTN-----PSVGTT 55

Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           K+  A   +I  LLD       T    E+ + +      
Sbjct: 56 VKLADALGVSITTLLDYEHGPRVTFVPPEQAVRMWSTEAG 95


>gi|302670002|ref|YP_003829962.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302394475|gb|ADL33380.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 174

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I    +  +L+ + LA + G    +  K +   IE     PS   + +I    N 
Sbjct: 6  DIGNRIKEARKAQHLSQTELANRLGKTMRTVQKYESGEIE-----PSIGVLNEIANNLNI 60

Query: 68 TICQ 71
          +  +
Sbjct: 61 SPAE 64


>gi|291536948|emb|CBL10060.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1]
          Length = 198

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 5/98 (5%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T  S ++I +AI +      +T    A+  G    +  K +   I  +      + + +I
Sbjct: 10  TMSSPEEIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMK-----IDVLKQI 64

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
               N    +LL    ++        K     +   S 
Sbjct: 65  ANELNVPWQELLSPEDNNIPKDNTTTKYPAYEFHTMSD 102


>gi|170754823|ref|YP_001782088.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169120035|gb|ACA43871.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 81

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + ++ E  N++ S LA  AG+  +  ++ +        + PS + + +I  A  
Sbjct: 4  NLKKIREEKNISQSKLAILAGISRSYVSEIESG-----KKTPSLDMLERIAEALE 53


>gi|153932832|ref|YP_001384724.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936860|ref|YP_001388245.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|152928876|gb|ABS34376.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932774|gb|ABS38273.1| DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 81

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + ++ E  N++ S LA  AG+  +  ++ +        + PS + + +I  A  
Sbjct: 4  NLKKIREEKNISQSKLAILAGISRSYVSEIESG-----KKTPSLDMLERIAEALE 53


>gi|126652284|ref|ZP_01724460.1| SipS [Bacillus sp. B14905]
 gi|126590859|gb|EAZ84972.1| SipS [Bacillus sp. B14905]
          Length = 188

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNC-GDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
            K Q  SM P Y   D++I++   ++      +   P   ++  K +I   G  +++ 
Sbjct: 40  IKVQGASMYPTYHDKDVIIVSKTSKIERFDQIVFQSPVEDELYIKRVIGVPGDKVEMK 97


>gi|21282054|ref|NP_645142.1| hypothetical protein MW0325 [Staphylococcus aureus subsp. aureus
          MW2]
 gi|49485229|ref|YP_042450.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|297209138|ref|ZP_06925537.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|300911139|ref|ZP_07128588.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|21203490|dbj|BAB94190.1| MW0325 [Staphylococcus aureus subsp. aureus MW2]
 gi|49243672|emb|CAG42096.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|296886071|gb|EFH25005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|300887318|gb|EFK82514.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH70]
          Length = 67

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R  L  + LA+ AG+   + +  +R         PS  +  KI    NET+ 
Sbjct: 3  NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57

Query: 71 QLLDLPF 77
           +  +  
Sbjct: 58 TVFIIEE 64


>gi|323175288|gb|EFZ60901.1| peptidase S24-like family protein [Escherichia coli LT-68]
          Length = 83

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%)

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
              G  + ++    V  G+ +L  P+         +   G  I L+  N  YP   ++
Sbjct: 10  IPNGSTVFVDPDRTVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPTNPRYPSIMLD 67


>gi|229096313|ref|ZP_04227286.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
 gi|229102426|ref|ZP_04233134.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
 gi|229115267|ref|ZP_04244677.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3]
 gi|228668407|gb|EEL23839.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3]
 gi|228681073|gb|EEL35242.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
 gi|228687273|gb|EEL41178.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
          Length = 181

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I++  +   LT   LA  A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKIEKQRKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + K++K I         S  F  +           + VP   S  
Sbjct: 63  SFLLEETNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAI------MTVPPNTSSS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
           + I   + ++       
Sbjct: 117 DNILEHKGEELAFVLDG 133


>gi|257792707|ref|YP_003183313.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
 gi|257476604|gb|ACV56924.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
          Length = 312

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 7/104 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + +  N+T S LA   G+   S  K +         +P  + + K+      T+ 
Sbjct: 5   DNLQHLRDTRNMTQSELAMLVGVSRQSVAKWE-----AEKSYPEMDKLLKLCDLFECTLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF--DSGVFPTG 112
            L+    +       +            G        +   P G
Sbjct: 60  DLVRGDLTGRAPDPTRSLPEDAPPVDACGYDEHMRRRAWTVPAG 103


>gi|297200612|ref|ZP_06918009.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
 gi|297147685|gb|EDY53778.2| DNA-binding protein [Streptomyces sviceus ATCC 29083]
          Length = 195

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + + +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +  A   +   L           ++ + E   +    
Sbjct: 56 VAKALRISAETLYVRAGILDAERDRDDVETRAVILAD 92


>gi|225571242|ref|ZP_03780240.1| hypothetical protein CLOHYLEM_07331 [Clostridium hylemonae DSM
           15053]
 gi|225160073|gb|EEG72692.1| hypothetical protein CLOHYLEM_07331 [Clostridium hylemonae DSM
           15053]
          Length = 251

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 63/230 (27%), Gaps = 24/230 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I  + ++   T   LA  +G+  ++  K      E    + + E I K+L  + +   
Sbjct: 10  EKIKLIMQKRGFTFEDLAWLSGVPYSTLTKIGSGATE-NPGFAAMERIAKVLDCSLDEFT 68

Query: 71  QLLDLPFSDGRT------------------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
               +   D                     T   E +  +                   G
Sbjct: 69  DREPMVPYDYADYVYRFKKLPDNMKEYIKYTIDSEYDQMIHSASSEKIKIKCFEFTNIVG 128

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--ILNSAIQVNCGDR 170
                    E     +     +            + P + +G +L    +       G+ 
Sbjct: 129 GLAQYDSRIERDIMVSSNEISRACTFCVYLSTHVLFPKFPEGSLLGFRYDDDYDPKNGEI 188

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARIL 219
             I  R G +    +  R  R I + +LN       +   +  + I R++
Sbjct: 189 -WIIMRGGFLFMGRVYKR-NRDIYVKALNGTIDHWHINSHTQYKRIGRLV 236


>gi|212697366|ref|ZP_03305494.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675558|gb|EEB35165.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 199

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I    +  NLT   LA++  +   + +K ++   E     PS +++ K+       
Sbjct: 34  IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSE-----PSMDNLVKLSEIFGVD 88

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLL 93
           I    +    +  +   K     L 
Sbjct: 89  IKYFKNKDDKENESFISKIFWDFLY 113


>gi|199597759|ref|ZP_03211186.1| putative transcriptional regulator [Lactobacillus rhamnosus
          HN001]
 gi|199591375|gb|EDY99454.1| putative transcriptional regulator [Lactobacillus rhamnosus
          HN001]
          Length = 99

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          A+        L+   LA K+G+  T+  + +R          S E++ KI  A  
Sbjct: 43 AVLEARRNAGLSQQELANKSGVPKTTIARIERGNNT------SIETLTKIANALG 91


>gi|295107365|emb|CBL04908.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 289

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + +  + +  +++ + LA++ G+   S  K +         +P  + + KI      ++ 
Sbjct: 21 DNLQHLRDLQDMSQADLAQRIGVSRQSVAKWE-----AEKSYPEMDKLIKICDLFGCSLD 75

Query: 71 Q 71
           
Sbjct: 76 D 76


>gi|291458779|ref|ZP_06598169.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418696|gb|EFE92415.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 183

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I E I R+ +   LT   L  + G+        +      + +  S E++ K L 
Sbjct: 3  IGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLK--SLEALAKALH 55


>gi|328947447|ref|YP_004364784.1| hypothetical protein Tresu_0542 [Treponema succinifaciens DSM
          2489]
 gi|328447771|gb|AEB13487.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 71

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 1  MTSFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          MT+     +      + ++      +    A    LD T  +  +R       R PS   
Sbjct: 1  MTTEEQDILSDFGNRLRKLRIEKGFSQEKFADLTQLDRTYVSGLERG-----KRNPSYLI 55

Query: 58 IFKILAATNETICQ 71
          + KI  + N ++  
Sbjct: 56 LLKIAKSLNISVKD 69


>gi|311900230|dbj|BAJ32638.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 200

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + ++H  T + L+ + G+  ++ ++ +  G     R P+ E +  +  A    
Sbjct: 12  VGPRLRAIRQQHGTTLAQLSEQTGISVSTLSRLESGG-----RRPTLELLLPLARAHGVA 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           + +L+D P +       +         L    S  G      V P G             
Sbjct: 67  LDELVDAPPTGDPRVRLRPFVRHGWTYLPLARSLGGMQAYKIVVPPGGGRENCEQ-RTHE 125

Query: 126 PHNGIYAIQTQD 137
            H  +Y +  + 
Sbjct: 126 GHEWLYVLSGEL 137


>gi|294631347|ref|ZP_06709907.1| signal peptidase [Streptomyces sp. e14]
 gi|292834680|gb|EFF93029.1| signal peptidase [Streptomyces sp. e14]
          Length = 144

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD L++    ++  GD ++++       +V K    RR     +++ 
Sbjct: 21  EVTGPSMVPTLYHGDRLLVRYGARIRPGDVIVLRHPFQQDLLVVKRAAERREGGWWVLAD 80

Query: 199 N 199
           N
Sbjct: 81  N 81


>gi|294620196|ref|ZP_06699530.1| UDP-glucose 6-dehydrogenase [Enterococcus faecium E1679]
 gi|314940182|ref|ZP_07847360.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133a04]
 gi|314942401|ref|ZP_07849244.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133C]
 gi|314952323|ref|ZP_07855334.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133A]
 gi|314994234|ref|ZP_07859537.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133B]
 gi|314997149|ref|ZP_07862135.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133a01]
 gi|291593549|gb|EFF25089.1| UDP-glucose 6-dehydrogenase [Enterococcus faecium E1679]
 gi|313588723|gb|EFR67568.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133a01]
 gi|313591321|gb|EFR70166.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133B]
 gi|313595582|gb|EFR74427.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133A]
 gi|313598801|gb|EFR77646.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133C]
 gi|313640621|gb|EFS05201.1| nucleotide sugar dehydrogenase [Enterococcus faecium TX0133a04]
          Length = 492

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 62/212 (29%), Gaps = 31/212 (14%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S K++ + I    +   +T   LA   G++    ++ +          PS + +  
Sbjct: 1   MKKLSQKRLAQIIIDSRKSLKMTQQQLAVATGINRALISRLESLDFI-----PSIQQLES 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    N     L     +    T+ + K I +      G                + +  
Sbjct: 56  LAEVLNFEPTDLFINESNKSNRTKHQSKNIAVAGTGYVGLSIATLLAQHNQVTAVDILPE 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLLIKPRT 177
              +  +               QD  +     + ++ ++ +          D ++I   T
Sbjct: 116 KVKQINNKKS----------PIQDDYIEKYLAEKNLNLIATTDGAAAYREADFVVIAAPT 165

Query: 178 G-------------DIVAKVLISRRGRSIDLM 196
                         + V K+++    ++I ++
Sbjct: 166 NYDSKQNYFDTSAVESVIKLVLEVNPKAIMVI 197


>gi|239814884|ref|YP_002943794.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801461|gb|ACS18528.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 70

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S S  +  + +  + +  +L+    A   GLD T  +  +R       R PS   I  
Sbjct: 1  MISLS-VRFGKRLRELRKERDLSQEEFAAHCGLDRTYVSGMERGV-----RNPSLAVIET 54

Query: 61 ILAATNETICQ 71
          +  A    + +
Sbjct: 55 LAGALGIRVEE 65


>gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202]
 gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202]
          Length = 127

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 1  MTSFSHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
          M+  S       I + I +  +   LT S L+ + G+     ++ +R   +      +  
Sbjct: 1  MSKLSVTDVDRFIGKRIQQRRKELGLTASALSEQIGIAQQQLSRYERGDNK-----INVS 55

Query: 57 SIFKILAATNETICQLL 73
           + +I  A + +I    
Sbjct: 56 HLVEIATALDTSIGWFF 72


>gi|210612353|ref|ZP_03289278.1| hypothetical protein CLONEX_01479 [Clostridium nexile DSM 1787]
 gi|210151613|gb|EEA82620.1| hypothetical protein CLONEX_01479 [Clostridium nexile DSM 1787]
          Length = 231

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 32/227 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +F+ K++ E +       NLT   L ++ G++ ++  + +  G++ + R      + + L
Sbjct: 9   TFTAKQVGERVKERRTELNLTMPELGKRVGVNKSTIQRYEADGVDPK-RTMIINGLAEAL 67

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYF----------------------PPSGS 100
             T E +  L +    D RT   ++ E  +  +                           
Sbjct: 68  LTTPEWLTGLSEDKEYDSRTLCARDMEEHIKKYLDTVSSVVKGEPHQQLLTTFLGKMIDL 127

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--- 157
                        + + V   E        YAI+++    +     M             
Sbjct: 128 YTVMAYHFADATAEVDRVAEDEGLKQSLRRYAIESRAIMERVYRKEMELPIEDMKQFLDG 187

Query: 158 ---ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              I +          L       +         RG    L S N  
Sbjct: 188 ILHIYDEGRTAVKMGDLFGIVTAAEERVAEKEKFRGS---LTSENDD 231


>gi|160940628|ref|ZP_02087971.1| hypothetical protein CLOBOL_05522 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436363|gb|EDP14130.1| hypothetical protein CLOBOL_05522 [Clostridium bolteae ATCC
          BAA-613]
          Length = 102

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I  +    + +   LA K+G+  ++ +   R         P+  ++ KI  A   
Sbjct: 3  DINERIIELRMERHWSEYQLAEKSGIGQSTISSWTRTKS-----MPTVPNLEKICNAFGI 57

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
          T+ Q          +    ++E+  
Sbjct: 58 TLSQFFADKEERTVSLSPVQQEMLH 82


>gi|170736538|ref|YP_001777798.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|169818726|gb|ACA93308.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 95

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + +A+        L+ + +A + G    +  + +R    G+   PS +++ K  AA  +T
Sbjct: 31 LLDAMLAARREAGLSQADVAARMGTKAPAITRLERALATGQ-HSPSVDTLRKYAAACGKT 89


>gi|86140912|ref|ZP_01059471.1| hypothetical protein MED217_17210 [Leeuwenhoekiella blandensis
          MED217]
 gi|85832854|gb|EAQ51303.1| hypothetical protein MED217_17210 [Leeuwenhoekiella blandensis
          MED217]
          Length = 135

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+     I   I R+ E   +    LA + G+   S +  ++            E + K
Sbjct: 1  MTTTKPNHIGRKIARIRELRGMKQEALAHELGISQQSVSHMEQSES---LEDSKLEEVAK 57

Query: 61 ILAAT 65
          +L  T
Sbjct: 58 VLGVT 62


>gi|320547716|ref|ZP_08042001.1| XRE family transcriptional regulator [Streptococcus equinus ATCC
           9812]
 gi|320447791|gb|EFW88549.1| XRE family transcriptional regulator [Streptococcus equinus ATCC
           9812]
          Length = 114

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 6/100 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++     L+   LA +  +   S +K +          P  E++ KI      ++ +L
Sbjct: 11  LKKLRVERKLSQDALAEQLFISRQSISKYETGEST-----PDLENLIKIADILGVSLDEL 65

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           +             E++              +    FP G
Sbjct: 66  VLGKKPCKIVERVIERKESSSMNIWEFLDKKWWLV-FPIG 104


>gi|296128685|ref|YP_003635935.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
 gi|296020500|gb|ADG73736.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
          Length = 446

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + E I    ER  L+ + LAR A + P+  +  +R       R P   ++ ++  A  
Sbjct: 19 VSERIRDARERSGLSQADLARAAMMHPSYVSHLERGV-----RGPGDGALERLARALG 71


>gi|258654748|ref|YP_003203904.1| XRE family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258557973|gb|ACV80915.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM
           44233]
          Length = 129

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 1   MTSFS---HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M   S    +++ + +        L+ S +AR+A + P S  + +        R PS E+
Sbjct: 1   MPQLSFTQQEELADLLRGRRHELGLSASEVARRADITPASVTRLENCTN---PR-PSVET 56

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           +  I A  +  +  +L L      +            +         +   +
Sbjct: 57  LTAICAVLDIPVADMLALVNVMPDSQLPSFTPYLRTKYHRMPDEAVQEMSAY 108


>gi|256823110|ref|YP_003147073.1| XRE family transcriptional regulator [Kangiella koreensis DSM
           16069]
 gi|256796649|gb|ACV27305.1| transcriptional regulator, XRE family [Kangiella koreensis DSM
           16069]
          Length = 175

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 45/180 (25%), Gaps = 12/180 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++  +   +   LA   G+   +  + +R   +     PS E+   + A     I   
Sbjct: 3   VRKLRLKRGWSQEQLAELTGVSTRTIQRIERGQTK-----PSLETQKSLAAVFEVDIATF 57

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPHNGIY 131
                 D                P           V          V   +    H  I+
Sbjct: 58  EPSLSMDSTGEPDMSTTDTNATEPKQQPDKPAIETVSHEEAEAMEYVKGIKEFYSHLLIF 117

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVA-KVLISR 188
            I T       +   ML  +      ++   +Q      ++          +  K L  +
Sbjct: 118 IIFTVMFIFTGKINDMLIAWSAWTFGLIIHGLQAFE---VINLFKINWEKKMVEKRLKKK 174


>gi|197105901|ref|YP_002131278.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
 gi|196479321|gb|ACG78849.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
          Length = 206

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I  A+    +   LT   LA ++GL     ++ +R         PS  S+ +I  A   
Sbjct: 23 NIGPAVRVRRKELGLTLKELAERSGLSVAFISQIERGKT-----APSIISLLQISDALGV 77

Query: 68 TICQL 72
           +   
Sbjct: 78 GVNHF 82


>gi|163746908|ref|ZP_02154265.1| probable transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
 gi|161380022|gb|EDQ04434.1| probable transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
          Length = 205

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +   +   +  + +   LT S LA  +G+  ++ +K +   +      P+ + + ++ 
Sbjct: 1  MTTAHALGARLRHLRKSRKLTLSALASLSGVAVSTISKIENGAL-----SPTLDKVLRLA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEK 88
             + +I QL+     D   ++   +
Sbjct: 56 DGLDLSIGQLIGEEQIDDHKSQPNSR 81


>gi|83945538|ref|ZP_00957885.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83851114|gb|EAP88972.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 71

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S   +  A+  +     LT + LA + G+   + N  +          PS     KI  
Sbjct: 1  MSRSGLENAMKALRAEAGLTQADLAARVGVTRKTINTVENGVFT-----PSALLALKIAR 55

Query: 64 ATNETICQLL 73
          A  + + Q+ 
Sbjct: 56 ALGQPVEQVF 65


>gi|257870115|ref|ZP_05649768.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           gallinarum EG2]
 gi|257804279|gb|EEV33101.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           gallinarum EG2]
          Length = 180

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 5/100 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGEKLRNLRVQKNLTQEELGERTDLSKGYISQLERDLS-----SPSMETFFTILEVLGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           T  +      +D +   ++E               +    
Sbjct: 57  TPEEFFRQENADHQVVYREEDSTSYYDEENGYELRWLIPD 96


>gi|326202757|ref|ZP_08192625.1| Peptidase S24/S26A/S26B, conserved region [Clostridium
           papyrosolvens DSM 2782]
 gi|325987341|gb|EGD48169.1| Peptidase S24/S26A/S26B, conserved region [Clostridium
           papyrosolvens DSM 2782]
          Length = 800

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/122 (9%), Positives = 27/122 (22%), Gaps = 21/122 (17%)

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
              V         N    +       +    SM P  + G   +       +   ++++ 
Sbjct: 673 EEYVEQ-LGWMKVNEQLKLGNDMFIAQVVGRSMEPTIKDGAFCVFRFERGGSRNGKVVLV 731

Query: 175 PRTG--------DIVAKVLI----SRRGR-----SIDLMSLNCCYPVDTVE---MSDIEW 214
                           K        +         I L   N  +    +E     + + 
Sbjct: 732 ESRHVSDPESLQSYTIKRYRSKKVYQTDGTWIHEKIILSPDNIDFEDIILENVNEDEFKV 791

Query: 215 IA 216
           +A
Sbjct: 792 VA 793


>gi|158339609|ref|YP_001520998.1| hypothetical protein AM1_A0348 [Acaryochloris marina MBIC11017]
 gi|158309850|gb|ABW31466.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 83

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 17/53 (32%)

Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            + +   L+ S LAR   +  ++     +              + K+L  + 
Sbjct: 2  KTLRQDAGLSQSELARALDIAESTVRNWDQGRSIPTLSALEYPHLLKLLNCSP 54


>gi|189426730|ref|YP_001953906.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ]
 gi|189422989|gb|ACD97386.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ]
          Length = 79

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I   I     R  +T   +A+  G+  T+ ++ ++  ++          + +IL    
Sbjct: 5  IGSNIREARRRRKITQEQMAKALGMSRTTISQIEKGIVQ----EVGVRKLIRILEYLG 58


>gi|315441649|ref|YP_004074526.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
 gi|315265304|gb|ADU02045.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
          Length = 399

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E IDR    H ++ S +AR+ G+   +  K +   I G +R P  E++  +     +
Sbjct: 5   RLVELIDRYRTAHGVSESEVARRIGMSRENLRKWR---INGVSRLPDRENLAAVARVIGK 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
              +++     D       +   P  +        
Sbjct: 62  PYREVVSAALFDTAYLTDDQASTPRPHNEVLHDAI 96


>gi|291549688|emb|CBL25950.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 253

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S++K    +  + +  NLT   LA K  +   + +K +R         P+   +  
Sbjct: 1  MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 55

Query: 61 ILAATNETICQ 71
          I    + T+ +
Sbjct: 56 IADILDVTVTE 66


>gi|242398850|ref|YP_002994274.1| Predicted transcription regulator, containing CBS domains
           [Thermococcus sibiricus MM 739]
 gi|242265243|gb|ACS89925.1| Predicted transcription regulator, containing CBS domains
           [Thermococcus sibiricus MM 739]
          Length = 186

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I R  +   +T   LA++AG+      K +   ++     P   +  +IL A  E     
Sbjct: 13  IKRFRKELGITQEELAQRAGVTQAYIAKLETGKVD-----PRLSTFNRILQALKECKKSR 67

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
                         +    + Y     +           GN
Sbjct: 68  FTAKELMSSPIIGVKPYETVEYVVKLMNEYNISQVPVIAGN 108


>gi|154501020|ref|ZP_02039058.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC
          29799]
 gi|150270044|gb|EDM97563.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC
          29799]
          Length = 114

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    ++ I   I  + +   L+ + LA +A L     +  +R       +  S  ++ +
Sbjct: 1  MREQDYRNIGVRIHNLRKLRGLSQAALAERAELSTPYISHIERGM-----KLLSLPALLR 55

Query: 61 ILAAT 65
          I  A 
Sbjct: 56 IAEAL 60


>gi|332283797|ref|YP_004415708.1| hypothetical protein PT7_0544 [Pusillimonas sp. T7-7]
 gi|330427750|gb|AEC19084.1| hypothetical protein PT7_0544 [Pusillimonas sp. T7-7]
          Length = 111

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   ++ + +   LT   LA +AGL+  +  + +   ++     P   ++ ++  A    
Sbjct: 5  LVSELEALRKAAGLTQGQLADRAGLNRMTVQRLESGSLD-----PRVSTLLEMARAMGME 59

Query: 69 IC 70
          + 
Sbjct: 60 LM 61


>gi|331699134|ref|YP_004335373.1| helix-turn-helix domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953823|gb|AEA27520.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 175

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 34/140 (24%), Gaps = 9/140 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             AI        +  + LA  +GL     ++ +R       R  S  ++   L  T   +
Sbjct: 2   GAAIRSRRRSIGINITELAALSGLSRPFVSQLERGLARPSMR--SLTALANALNTTAHAL 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L D         +             +         + P   +       E       
Sbjct: 60  MALPDEAPVTLVRRDAPNSLGIGHSDGQARGLFRERRTMLPVEYRSGPREFEE------- 112

Query: 130 IYAIQTQDTRHKTQDTSMLP 149
            Y  + ++  +       + 
Sbjct: 113 YYVHRGEEFMYVVSGDFEMD 132


>gi|322376010|ref|ZP_08050520.1| putative transcriptional regulator [Streptococcus sp. C300]
 gi|321278960|gb|EFX56003.1| putative transcriptional regulator [Streptococcus sp. C300]
          Length = 67

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    N
Sbjct: 2  LKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYT-----PSIVIALKISHIFN 54


>gi|307330907|ref|ZP_07610040.1| putative phage repressor [Streptomyces violaceusniger Tu 4113]
 gi|306883448|gb|EFN14501.1| putative phage repressor [Streptomyces violaceusniger Tu 4113]
          Length = 164

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198
           +  + SM P    GD L++     V  GD ++++   R   ++ K  + RR     +   
Sbjct: 26  EVYNPSMQPTLYPGDQLVVRYGAPVRPGDVVVVRHPFRQDLLIVKRAVERREGGWWVKGD 85

Query: 199 NC 200
           N 
Sbjct: 86  NP 87


>gi|295110993|emb|CBL27743.1| Predicted transcriptional regulator with C-terminal CBS domains
          [Synergistetes bacterium SGP1]
          Length = 140

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I        +    LARK G+   + ++ +        +  S++ +  I +A +  
Sbjct: 4  IGANIKARRRALGMNQEELARKLGVTQANISRIESSV-----KGLSSDMLLPIASALSCD 58

Query: 69 ICQ 71
          + +
Sbjct: 59 VRE 61


>gi|240169850|ref|ZP_04748509.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
           12478]
          Length = 474

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRSERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    +      ++      L      +      G  P 
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVGAHPA 103


>gi|195546600|ref|YP_002117628.1| p070 [Rhizobium phage 16-3]
 gi|102642543|gb|ABF71324.1| p070 [Rhizobium phage 16-3]
          Length = 203

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/205 (10%), Positives = 57/205 (27%), Gaps = 23/205 (11%)

Query: 18  ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77
            +  LT    A++ G+   +++  K   +      P       I    + +   +     
Sbjct: 7   AKRGLTDYKAAKEIGVLQQTYSSWKHGSV------PRPNRYAAIAGWLHIS-IDMARELC 59

Query: 78  SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD 137
            +   +    K   +     +G       G F               +  +    I +  
Sbjct: 60  EEAVASTGNTKLPRVAPVAEAGRVADRKEGKFK-------FDTASPGNAGSSGSRIPSSR 112

Query: 138 TRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
                    M P    G    L+ ++    G+ +++  + G      L S      ++  
Sbjct: 113 YTVSVDTKVMEPALLVGTKAWLDPSVWPKIGNEVMVHGKGGIAWLGRLESLENGRAEISR 172

Query: 198 L---NCCYPVDTVEMSDIEWIARIL 219
               N       + + D++ +  ++
Sbjct: 173 YALGN------RITIDDVQAVHAVV 191


>gi|163813853|ref|ZP_02205247.1| hypothetical protein COPEUT_00006 [Coprococcus eutactus ATCC
          27759]
 gi|158450723|gb|EDP27718.1| hypothetical protein COPEUT_00006 [Coprococcus eutactus ATCC
          27759]
          Length = 45

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 17/43 (39%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
             KK+   +  + +   LT   LA + G+   S ++ +    
Sbjct: 1  MDQKKVGSFLRELRKEKQLTQEQLAERFGVTNRSVSRWETGVS 43


>gi|328944742|gb|EGG38903.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK1087]
          Length = 168

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 5/145 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E + ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL       +      ++    Y+    S GF+             +       P 
Sbjct: 57  TTDYLLLEDSDKPKIKPVLSEDEKNRYYKEVKSYGFWQVLYIFISALAIFLFFAGSSFPA 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152
                +            ++    +
Sbjct: 117 KFTALVWLSFFLLIASAMAINKALK 141


>gi|317473654|ref|ZP_07932943.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp.
          3_2_56FAA]
 gi|316898944|gb|EFV20969.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp.
          3_2_56FAA]
          Length = 239

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 6/62 (9%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          +E ++R+ +    +   L  +  +   + +K +          P    + ++      +I
Sbjct: 4  YENLNRLRKEKGWSQEELGNRLNVSRQTVSKWELGSTT-----PELNKLMELSRIFQVSI 58

Query: 70 CQ 71
           +
Sbjct: 59 DE 60


>gi|78187660|ref|YP_375703.1| hypothetical protein Plut_1806 [Chlorobium luteolum DSM 273]
 gi|78167562|gb|ABB24660.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 370

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 35/147 (23%), Gaps = 5/147 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + R+      +   LA  AG+   +    +    E     P   S+  I  A +  + 
Sbjct: 8   ANVRRLRSMKRFSQKELAEAAGMSLPAIKNLELQKSE-----PRMSSLQAIARALDVPLQ 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                         +  + +       +    + D   +        +         +  
Sbjct: 63  DFFRPVRQLHSVRFRSGRRMQNRENVLADVSRWLDDYEYLEQCLKRELPFRLEAERASCF 122

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDIL 157
            A   +      +   + P     DI 
Sbjct: 123 RARPVEAAALCREKLGLKPTEPIHDIC 149


>gi|332798146|ref|YP_004459645.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332695881|gb|AEE90338.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 100

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I ++     L    LA K G+     +  +          PS E++ KI  A   
Sbjct: 2  NIGHRIKQIRIAKGLQGIQLAEKVGITNVYLSYLENGTKI-----PSIETLQKICDALGI 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          T+ +      ++     ++  E   +  P 
Sbjct: 57 TLSEFFMDENANLPPEYQELIENVKVLSPK 86


>gi|325479131|gb|EGC82228.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 91

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++   +  + +   +  + L  K G+   + +  +R   +         S+ ++  
Sbjct: 24 RLVNNLSSLRKEKGMNQTELGEKVGVSRQTISLIERG--DYNPSVLVALSLARVFE 77


>gi|294619377|ref|ZP_06698838.1| plasmid maintenance system antidote protein, XRE family
           [Enterococcus faecium E1679]
 gi|291594381|gb|EFF25797.1| plasmid maintenance system antidote protein, XRE family
           [Enterococcus faecium E1679]
          Length = 367

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 5/103 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  +AE   L+   LA + G+ P + +K               E+  K+      + 
Sbjct: 18  GETLKEVAEELGLSHKDLAERLGITPKTISKIVNGTAPITP-----ETALKLERVLGISS 72

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
                L  +      + E E  L             + +   G
Sbjct: 73  NFWNQLELNYREKLTEIEAEAKLKDEIEILKEYIPYNEIANAG 115


>gi|225570293|ref|ZP_03779318.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM
           15053]
 gi|225160825|gb|EEG73444.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM
           15053]
          Length = 262

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M      +  E + ++ +  NLT   LA    +  T+ +K +         +PS +S+ +
Sbjct: 59  MAKL---EFNEKLQKLRKSKNLTQEQLAEILSVSRTAISKWESGRG-----YPSIDSLKE 110

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           I      ++  LL          E  +++I  
Sbjct: 111 ISKFFTISLDDLLSSEEILNAAQEDTDRKIHH 142


>gi|210635071|ref|ZP_03298410.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279]
 gi|210158511|gb|EEA89482.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279]
          Length = 226

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 10/135 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI   I  +   H ++   LA +  +   + +  +         +P  +S+  +      
Sbjct: 19  KIGGRIRELRAIHGMSQDDLAARVYVSRQTISSWENGKT-----YPDVQSLLLLSEIFGA 73

Query: 68  TICQLLDLPFSDGRTTEKKEKEIP----LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           ++  L+    +    T  ++ +         F          +        W+   +P+ 
Sbjct: 74  SVDSLIKGDVNAMNETIDRDAKTMKRLTYAMFAFLLLMIAALAWAVVQLVAWDW-PLPQT 132

Query: 124 RSPHNGIYAIQTQDT 138
                  + +     
Sbjct: 133 APSFILAFVLWGIAM 147


>gi|297190678|ref|ZP_06908076.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719901|gb|EDY63809.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 202

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 38/144 (26%), Gaps = 9/144 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IFKILAAT 65
           +   +  +     +T + LA   G+  ++ ++ +        R PS E    + +I    
Sbjct: 13  VGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQ-----RRPSLELLLPLARIYDVP 67

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            + +                +   +  +       G      + P           +   
Sbjct: 68  LDDLVGAPRTGDPRIHLKPIRRFGMTFVPLSRRPGGVHAFKMIIPAQPGPLE-PTLQTHE 126

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP 149
               +Y +  +      +    LP
Sbjct: 127 GFEWLYVLNGRLRLVLGERDLTLP 150


>gi|15895220|ref|NP_348569.1| phage related transcriptional regulator [Clostridium
          acetobutylicum ATCC 824]
 gi|15024927|gb|AAK79909.1|AE007699_19 Phage related transcriptional regulator (Xre family) [Clostridium
          acetobutylicum ATCC 824]
 gi|325509365|gb|ADZ21001.1| Phage related transcriptional regulator [Clostridium
          acetobutylicum EA 2018]
          Length = 123

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E + ++ +   LT   LA + GL  +  +K +     G     S E++  +    N T
Sbjct: 2  LGENLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTG-----SIETLQTLSNYFNVT 56

Query: 69 ICQ 71
          + +
Sbjct: 57 VDE 59


>gi|310639686|ref|YP_003944444.1| transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309244636|gb|ADO54203.1| Predicted transcriptional regulator [Paenibacillus polymyxa SC2]
          Length = 116

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   I +  +R NLT   LA +  L      + +R       R  S E++ K+     
Sbjct: 5  DLGTRIRQERQRLNLTQEKLAERVDLSHAYIGQIERGE-----RSLSLETLVKLANELG 58


>gi|310828547|ref|YP_003960904.1| hypothetical protein ELI_2972 [Eubacterium limosum KIST612]
 gi|308740281|gb|ADO37941.1| hypothetical protein ELI_2972 [Eubacterium limosum KIST612]
          Length = 118

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 1/87 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +    +    +   LA   G   T     +R   E   R    ++I K L  + E 
Sbjct: 3  IGERLKEARKAKGFSQDKLAEAIGTSRTVITDIERDKTE-HPRVSYVDTICKTLEISKEW 61

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          + +               E    +   
Sbjct: 62 LLREEGPMAYPLPEWNANEILTQIHEI 88


>gi|269956025|ref|YP_003325814.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269304706|gb|ACZ30256.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 88

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          ++ +AI  +     +T + LA   G+        ++   E
Sbjct: 21 RLGQAIKALRRERGMTQADLADAIGVSRQWIIGIEKGTKE 60


>gi|297560997|ref|YP_003679971.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845445|gb|ADH67465.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 187

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 41/141 (29%), Gaps = 11/141 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+      +   +  +     L+   LA  +G+     ++ +    +     P+   + +
Sbjct: 1   MSDTLGTALASTLRELRRARGLSGGALAELSGVSRGMISRIENGEAQ-----PTASLLGR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + AA   T+ +L+          +++               G+    V P       + +
Sbjct: 56  LAAALGITLSELIARAEQ----GDRRLVRAREQPVWTDPGTGYRRRAVSPASGGP--IEL 109

Query: 121 PEIRSPHNGIYAIQTQDTRHK 141
            E+  P         Q     
Sbjct: 110 VEVELPPGARVGFPAQAYALT 130


>gi|257791416|ref|YP_003182022.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257475313|gb|ACV55633.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 205

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           E +  +     LT   LA K  +  T+ +K +  G  G     S + + ++  
Sbjct: 4  GEKLKALRTERGLTQEQLAAKLYVSRTAVSKWETGG--GSPNLDSLQVVARLFD 55


>gi|226361238|ref|YP_002779016.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226239723|dbj|BAH50071.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 168

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E   ++   LA+ AG+     ++ +R       R PS E + +I      
Sbjct: 25  DIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERG-----LRKPSAEVLGQIAKGLRV 79

Query: 68  TICQLLDLPFSDGRTTEKKEK 88
           +   L        +      +
Sbjct: 80  SSEVLYVQAGYLEQRPHGPLR 100


>gi|327472198|gb|EGF17635.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK408]
          Length = 168

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 37/145 (25%), Gaps = 5/145 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL              ++    Y+    S GF+             +       P 
Sbjct: 57  TTDYLLLEDSDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152
                +            ++    +
Sbjct: 117 KFTALVWLSFFLLIASAMAINKALK 141


>gi|289547795|ref|YP_003472783.1| transcriptional regulator of molybdate metabolism, XRE family
          [Thermocrinis albus DSM 14484]
 gi|289181412|gb|ADC88656.1| transcriptional regulator of molybdate metabolism, XRE family
          [Thermocrinis albus DSM 14484]
          Length = 329

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + ER  L+   LA+   +  T+ +  +R  +      PS     +I  A   ++ 
Sbjct: 3  NRVKELRERAGLSQEELAKLCKIPRTTLSAIEREMVV-----PSVSHAIRIARALGCSVE 57

Query: 71 QLLDLPF 77
          +L     
Sbjct: 58 ELFPQEE 64


>gi|251810483|ref|ZP_04824956.1| bacteriophage repressor [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875460|ref|ZP_06284331.1| toxin-antitoxin system, antitoxin component, Xre family
           [Staphylococcus epidermidis SK135]
 gi|251806087|gb|EES58744.1| bacteriophage repressor [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295487|gb|EFA88010.1| toxin-antitoxin system, antitoxin component, Xre family
           [Staphylococcus epidermidis SK135]
 gi|329732997|gb|EGG69338.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
           VCU028]
          Length = 109

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++ +I   I    +  +++ S LAR+ G+  ++ ++          R           
Sbjct: 1   MRNNDEIITIIKSAMKEQDMSLSELARRVGVAKSAVSRYLNLT-----REFPLNRTEDFA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            A + +   LL    S+ +  + K +   L         
Sbjct: 56  KALSISTEYLLGFDKSEQQDEQPKHRAAHLEGELTDEEW 94


>gi|254387045|ref|ZP_05002322.1| transcriptional regulator [Streptomyces sp. Mg1]
 gi|194345867|gb|EDX26833.1| transcriptional regulator [Streptomyces sp. Mg1]
          Length = 223

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 43/135 (31%), Gaps = 8/135 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + ++   T + L    G+  ++ ++ +        R P+ E +  +  A    
Sbjct: 17  VGPRLRALRQQRGTTLAQLGEITGISLSTLSRLESGQ-----RRPTLELLLPLAKAHRVA 71

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-GSGGFFDSGVFPTGNKWNTVGVPE--IRS 125
           + +L+  P +       +        + P     G   +          +  +PE  +  
Sbjct: 72  LDELVGAPETGDPRIRPRPFVRHGSTYVPLTRHFGGVHAFKTIMPPVDGSAPLPELRVHE 131

Query: 126 PHNGIYAIQTQDTRH 140
            +  +Y +  +    
Sbjct: 132 GYEWLYVLSGRVRLL 146


>gi|196038315|ref|ZP_03105624.1| immunity repressor protein [Bacillus cereus NVH0597-99]
 gi|225865525|ref|YP_002750903.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102]
 gi|228916172|ref|ZP_04079742.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228930568|ref|ZP_04093562.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229185777|ref|ZP_04312953.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1]
 gi|196030723|gb|EDX69321.1| immunity repressor protein [Bacillus cereus NVH0597-99]
 gi|225790340|gb|ACO30557.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102]
 gi|228597689|gb|EEK55333.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1]
 gi|228829089|gb|EEM74732.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228843370|gb|EEM88448.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 142

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   I  + ++ NLT   LA K G+        +        R+P  + + K+    
Sbjct: 2  IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCF 53


>gi|90581518|ref|ZP_01237311.1| hypothetical transcriptional regulator [Vibrio angustum S14]
 gi|90437280|gb|EAS62478.1| hypothetical transcriptional regulator [Vibrio angustum S14]
          Length = 213

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 55/215 (25%), Gaps = 12/215 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I R+A+   ++   L     L   + ++          R      + KI    N + 
Sbjct: 4   LERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRE-----LEKIADTLNTS- 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              +     D  T         L                F   N  ++V V   R+    
Sbjct: 58  IGYILTGQVDTGTQATTTISTELDSAATCTYIPVIHRKDFSAYNDGSSVEVISKRAIPQ- 116

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +  + +       + ++      G   +     +      +    R  +     +    
Sbjct: 117 -HLEREECLGLLIDNENISQCAPVGSYALATKKAEYRPKQPVFASVRGSEPDFYHMTQLA 175

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221
              +   S    +P   V   + +    I+   WA
Sbjct: 176 DGVVFSTSQ-PDFPNLFVNNDEFQIHGYIIQSDWA 209


>gi|310829907|ref|YP_003962264.1| transcriptional regulator [Eubacterium limosum KIST612]
 gi|308741641|gb|ADO39301.1| transcriptional regulator [Eubacterium limosum KIST612]
          Length = 112

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    HK I   I +     N++   LARK G+ PT     +        +  S +S+ +
Sbjct: 1  MQELDHKAIGLRIRKQRTFLNMSRDELARKIGITPTFLADIELGT-----KGFSLKSLNR 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEK 85
                 +   +L  P     T   
Sbjct: 56 FCDVLKMSADAILYGPKEYMGTKYA 80


>gi|269963924|ref|ZP_06178236.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831411|gb|EEZ85558.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 335

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 37/139 (26%), Gaps = 13/139 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARK--------AGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            E + ++ E   LT   LA K        A +DP + ++ +R         P+T    +I
Sbjct: 32  GEYLKQLREEIGLTQKELATKLNLASTDFASIDPVTISRWERGTT-----APTTVKAIRI 86

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L      +   L    S+      +E        P +                  +  + 
Sbjct: 87  LRVLTTDLMPFLITLPSESGKGIFEEIVEYRFKSPWATLMSSSYDTQSKCNAITESQLLE 146

Query: 122 EIRSPHNGIYAIQTQDTRH 140
             +  +             
Sbjct: 147 SDKDDYLTSLKHFFNSLSL 165


>gi|258517093|ref|YP_003193315.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780798|gb|ACV64692.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 61

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I ++  ++ +T   LA+K G+     ++ +     GR + PST  + KI    +  + +L
Sbjct: 4  IRKLRIKYGVTQEKLAQKVGISRIYLSELEN----GRKKNPSTTLLEKIAKNFDVRVSEL 59

Query: 73 L 73
           
Sbjct: 60 Y 60


>gi|225377083|ref|ZP_03754304.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM
           16841]
 gi|225210988|gb|EEG93342.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM
           16841]
          Length = 240

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +  +  ++ LT   LA ++ L     ++ +R         PS  ++  I+     
Sbjct: 63  DIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNT-----PSIGTLLDIIQCLGT 117

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPL 92
           T  +       +    + ++    +
Sbjct: 118 TPAEFFTDEEPEQIVFKNEDFFTKV 142


>gi|332982996|ref|YP_004464437.1| helix-turn-helix domain-containing protein [Mahella australiensis
           50-1 BON]
 gi|332700674|gb|AEE97615.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 222

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/109 (9%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   +  + ++   + +  A K GL    ++  +    +   +   T+ +  I   + +
Sbjct: 78  EIANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEEGNRQPDIKL--TKKLADIFNVSAD 135

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +   +++P S       +   +                  F   +   
Sbjct: 136 YLIGRINVPNSYIPEEYAQRYPVTKRDLSQYEDFIEHIDQFFMNDDVPE 184



 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E + ++ ++  LT   L++KAG+  +  +  +          PS + + ++      T
Sbjct: 3  VGERLKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSN-----PSLKRLSELAEVLGTT 57


>gi|332798913|ref|YP_004460412.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332696648|gb|AEE91105.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 184

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 44/163 (26%), Gaps = 12/163 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------ 59
           +  I + +    E+  +T   LA KAG+ P+  ++ +   +          SI       
Sbjct: 3   NANIGKKLQLYREQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVPMF 62

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV- 118
           K     ++T   ++            +E  I  L  P       F     P       V 
Sbjct: 63  KFFITDDDTKKYIVRKDSRKTIGWPSEEDIIYWLLTPGISGDIEFCIMEIPPHKNQEGVV 122

Query: 119 -----GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
                              +        T D+ ++P +     
Sbjct: 123 QSHVGEEVAYILEGPVNILLDGNLYTLYTGDSLVIPSFTNHRW 165


>gi|327463455|gb|EGF09774.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK1057]
          Length = 167

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           T   LL              ++    Y+    S GF+         
Sbjct: 57  TTDYLLLEESDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFISA 102


>gi|319893634|ref|YP_004150509.1| transcriptional regulator, Cro/CI family [Staphylococcus
          pseudintermedius HKU10-03]
 gi|317163330|gb|ADV06873.1| transcriptional regulator, Cro/CI family [Staphylococcus
          pseudintermedius HKU10-03]
          Length = 67

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R     + LA+KAG+   + +  +R G       PS  +  KI     
Sbjct: 3  NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNGFT-----PSILTSIKIARIFG 53


>gi|254551040|ref|ZP_05141487.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
          Length = 346

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + +    +   LT   LA   GL   + N+ +       +R P    + K+     
Sbjct: 4  LGDVLAVARKARGLTQIELAELVGLTQPAINRYESG-----DRDPDQHIVAKLAEILG 56


>gi|166362821|ref|YP_001655094.1| hypothetical protein MAE_00800 [Microcystis aeruginosa NIES-843]
 gi|166085194|dbj|BAF99901.1| hypothetical protein MAE_00800 [Microcystis aeruginosa NIES-843]
          Length = 73

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 1  MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          M S   ++I    + R  +    +   LA   GL  T  ++ +R       R  S
Sbjct: 1  MQSGQLEQILGRELQRYRQEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLS 55


>gi|153854463|ref|ZP_01995741.1| hypothetical protein DORLON_01736 [Dorea longicatena DSM 13814]
 gi|149752989|gb|EDM62920.1| hypothetical protein DORLON_01736 [Dorea longicatena DSM 13814]
          Length = 499

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 19/181 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S   +   +    +  ++T   LA   G++ +  ++ ++         PS   + +
Sbjct: 7   MKKLSQSLLANLVTNRRKEKHMTQQDLADITGINRSMISRLEKEDFI-----PSIPQLEQ 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    +     L     +    +         +    +G  G   + +    N    V +
Sbjct: 62  LGETLDFEPQTLFVDAGNTKLPSPSPLN----IAVAGTGYVGLSIATLLAQHNHVTAVDI 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD---ILILNSAIQVNCGDRLLIKPRT 177
              +                  QD  +     + D      L+        D ++I   T
Sbjct: 118 IPEKVELINNRKSP-------IQDDYIEKYLAEKDLDLTATLDGESAYKDADFVVIAAPT 170

Query: 178 G 178
            
Sbjct: 171 N 171


>gi|150018645|ref|YP_001310899.1| XRE family transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905110|gb|ABR35943.1| transcriptional regulator, XRE family [Clostridium beijerinckii
           NCIMB 8052]
          Length = 371

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 54/199 (27%), Gaps = 38/199 (19%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       I E I    +   +T   LA   G+   S +K +         +P    + +
Sbjct: 1   MKKL---NIGECIAYKRKEKGVTQEQLADYIGVSKASVSKWESGLS-----YPDILLLPE 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    N ++ +LL       +   KK        F                         
Sbjct: 53  LATYFNISVDELLGYSPQLKKEDIKKIYNELSHEFAIK---------------------- 90

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P     +     I+   +          P     D L++N +I     D      +   +
Sbjct: 91  PFDEVTNRCEKLIKKYYSCF--------PFLLSMDQLLINYSILAKTEDIKREIFQKCIL 142

Query: 181 VAKVLISRRGRSIDLMSLN 199
           ++K +        ++ S N
Sbjct: 143 LSKRIKEESDNITEIKSSN 161


>gi|328883993|emb|CCA57232.1| Transcriptional regulator, XRE family [Streptomyces venezuelae
          ATCC 10712]
          Length = 138

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + + +        L+   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGNLGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERG-----LRKPSAEVLQQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  A   +   L             + +   ++
Sbjct: 56 VAKALRISAETLYVRAGILDEKERDELETRAVI 88


>gi|294500115|ref|YP_003563815.1| DNA-binding protein [Bacillus megaterium QM B1551]
 gi|294350052|gb|ADE70381.1| DNA-binding protein [Bacillus megaterium QM B1551]
          Length = 181

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +++  +   L+   LA+ A + P+  ++ +R              + K L     
Sbjct: 5   DIGKKVEKFRKAKGLSSRELAKLAEITPSMLSQIERGLANPSISTLKI--LAKCLDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +                +++            S  F  +           + VP ++S  
Sbjct: 63  SFLLEEINTSHLVVRLNERKTMKVKELTYSLVSPDFTGNLATAI------MEVPPMKSSS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
               A + ++  +  + 
Sbjct: 117 ESPLAHKGEEVAYVLEG 133


>gi|220909774|ref|YP_002485085.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219866385|gb|ACL46724.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
          Length = 99

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          T  +  +I   I ++ +   LT    A   G+  T+ N+ +   ++      + + I ++
Sbjct: 14 TRLAQPQISHLIRQIRQGMGLTQEQFAMVLGVTYTTVNRWENAHMQPSP--LALKQICQM 71

Query: 62 LAATNETICQLLDLPFSDGRTTEKKEK 88
          L   + T        +         E 
Sbjct: 72 LKELSTTADPAYRQQWQLMLEDYFPEA 98


>gi|169627870|ref|YP_001701519.1| putative transcriptional regulator [Mycobacterium abscessus ATCC
           19977]
 gi|169239837|emb|CAM60865.1| Hypothetical transcriptional regulator [Mycobacterium abscessus]
          Length = 185

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+     L+ + LA ++G+   S ++ +        R    +++F +  A   
Sbjct: 10  EVGARLRRLRTEAGLSLAELATRSGVGKGSISELENG-----RRTARLDTLFALTKALGA 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
            +   + +       +   +    +         G+ +       
Sbjct: 65  PLSAAVGVSPPADGPSVHGQAVHAVSLSGWQTDDGYVEVYRITVE 109


>gi|325128210|gb|EGC51097.1| hypothetical protein NMXN1568_1041 [Neisseria meningitidis N1568]
          Length = 55

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM---SDIEWIARILW 220
                D+  K +       + + S N  Y    +++    DI  + R+ W
Sbjct: 1   MRIGNDLFVKRVQRIP-GKLLVTSENSRYAPFEIDLSHTDDIAIVGRVEW 49


>gi|255324218|ref|ZP_05365340.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141]
 gi|255298734|gb|EET78029.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141]
          Length = 492

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 5/129 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++    +L+ + LA   GL  +  N+ +        R  +   + +I       
Sbjct: 29  VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 83

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S      +   +   L   P       +            V V        
Sbjct: 84  ATFFSRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDVHRRYRNVR 143

Query: 129 GIYAIQTQD 137
              ++ T  
Sbjct: 144 DKLSLATDA 152


>gi|311741010|ref|ZP_07714835.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303812|gb|EFQ79890.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 492

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 5/129 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++    +L+ + LA   GL  +  N+ +        R  +   + +I       
Sbjct: 29  VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 83

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S      +   +   L   P       +            V V        
Sbjct: 84  ATFFSRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDVHRRYRNVR 143

Query: 129 GIYAIQTQD 137
              ++ T  
Sbjct: 144 DKLSLATDA 152


>gi|225570465|ref|ZP_03779490.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM
           15053]
 gi|225160662|gb|EEG73281.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM
           15053]
          Length = 194

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 16/139 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +  +    +LT   LA +A L     ++ +R         PS  ++  +L     
Sbjct: 17  DIGKKLKELRIAKDLTQEELADRAELSKGFISQLERDLT-----SPSIATLVDLLQVLGT 71

Query: 68  TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           TI +                     +   K       P +         +         +
Sbjct: 72  TINEFFSEDPEEQIVFHDEDYFEKIDTDLKNKTEWIIPNAQKNMMEPIRLTLEPGGSTYL 131

Query: 119 GVPEIRSPHNGIYAIQTQD 137
            VP         Y ++   
Sbjct: 132 DVP--HEGEEFGYVLKGSI 148


>gi|116249777|ref|YP_765615.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae
          3841]
 gi|241206954|ref|YP_002978050.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|115254425|emb|CAK05499.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|240860844|gb|ACS58511.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 125

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EA+ R+  R  ++   +A    + P   +  +     G+   P+ + + +
Sbjct: 1  MTPF-----GEAVRRLRARKGVSQKEMAEALNVSPAYLSALE----HGKRGLPTFDLLQR 51

Query: 61 ILAATNETICQ 71
          I    N    +
Sbjct: 52 IAGYFNIIWDE 62


>gi|38257067|ref|NP_940721.1| Orf36 [Pseudomonas syringae pv. syringae]
 gi|37723844|gb|AAR02170.1| Orf36 [Pseudomonas syringae pv. syringae]
          Length = 115

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 5/66 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K I   I    +   LT S LA     +  S  + +R         P  E + K+    
Sbjct: 5  RKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAET-----APDGEQLIKMAEFF 59

Query: 66 NETICQ 71
            +   
Sbjct: 60 EISPMD 65


>gi|332186364|ref|ZP_08388109.1| helix-turn-helix family protein [Sphingomonas sp. S17]
 gi|332013732|gb|EGI55792.1| helix-turn-helix family protein [Sphingomonas sp. S17]
          Length = 463

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 34/121 (28%), Gaps = 6/121 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             A+ R+  +  L+ + +A    + P+  N  +R       R  S   + +++   +   
Sbjct: 9   GHAVRRLRRQQGLSQAAMAEMLDISPSYLNLIERNQ-----RPVSAALLVRLVETFDFDP 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L       G    ++ +    ++          +  +               R    G
Sbjct: 64  RALTADAPGGGAAAMRR-RLADPMFADLEIDRAELEEWLAAAPGGVEAFARAFDRWSGEG 122

Query: 130 I 130
            
Sbjct: 123 A 123


>gi|328478429|gb|EGF48170.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462]
          Length = 140

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           A+    +   L+   LA K+G+  T+  + +R          S E++ KI  A  
Sbjct: 84  AVLEARQNAGLSQQELANKSGVPKTTIARIERGSNT------SIETLTKIANALG 132


>gi|297157339|gb|ADI07051.1| hypothetical protein SBI_03930 [Streptomyces bingchenggensis BCW-1]
          Length = 178

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198
           +  + SM+P    GD L++     V  GD ++++   R   ++ K  + RR     +M  
Sbjct: 37  EVYNPSMVPTLNPGDRLVVRYGAAVRAGDVVVLRHPFRQDLLIVKRAVERRDGGWWVMGD 96

Query: 199 NC 200
           N 
Sbjct: 97  NP 98


>gi|257792297|ref|YP_003182903.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317490218|ref|ZP_07948706.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA]
 gi|257476194|gb|ACV56514.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316910712|gb|EFV32333.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA]
          Length = 71

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+  +   +   I  + +   L+   LA    ++ +   K +     G  R PS E I K
Sbjct: 1  MSQETRTFVGNRIRELRKSQKLSQQKLALMVNVERSYLAKIE-----GGKRNPSLECIEK 55

Query: 61 ILAATNETICQLL 73
          I      ++ +  
Sbjct: 56 ISKGLGLSLEEFF 68


>gi|229553416|ref|ZP_04442141.1| probable transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
 gi|258538560|ref|YP_003173059.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705]
 gi|229313297|gb|EEN79270.1| probable transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
 gi|257150236|emb|CAR89208.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705]
          Length = 100

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          A+    +   L+   LA K+G+  T+  + +R          S E++ KI  A  
Sbjct: 44 AVLEARQNAGLSQQELANKSGVPKTTIARIERGSNT------SIETLTKIANALG 92


>gi|162455328|ref|YP_001617695.1| putative HTH-type transcriptional regulator ydcN [Sorangium
          cellulosum 'So ce 56']
 gi|161165910|emb|CAN97215.1| Putative HTH-type transcriptional regulator ydcN [Sorangium
          cellulosum 'So ce 56']
          Length = 148

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+    K++  AI  + + H LT +  A KA L  T   + +R       R     ++  
Sbjct: 1  MSDALPKEVGRAIRVLRQLHGLTYAEFAEKARLSATYLRQVERGE-----RDLGLGALAL 55

Query: 61 ILAATNET 68
          I    N  
Sbjct: 56 IAQGLNCD 63


>gi|57652609|ref|YP_185312.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus COL]
 gi|87160419|ref|YP_493064.1| Cro/CI family transcriptional regulator-related protein
          [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194131|ref|YP_498920.1| hypothetical protein SAOUHSC_00331 [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|161508620|ref|YP_001574279.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221142657|ref|ZP_03567150.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          str. JKD6009]
 gi|253730712|ref|ZP_04864877.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253735091|ref|ZP_04869256.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|258453058|ref|ZP_05701051.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|262048913|ref|ZP_06021793.1| hypothetical protein SAD30_0759 [Staphylococcus aureus D30]
 gi|262052844|ref|ZP_06025029.1| hypothetical protein SA930_1142 [Staphylococcus aureus 930918-3]
 gi|282922321|ref|ZP_06330012.1| transcriptional regulator [Staphylococcus aureus A9765]
 gi|284023358|ref|ZP_06377756.1| Cro/CI family transcriptional regulator-related protein
          [Staphylococcus aureus subsp. aureus 132]
 gi|294849997|ref|ZP_06790735.1| transcriptional regulator [Staphylococcus aureus A9754]
 gi|304380314|ref|ZP_07363034.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          ATCC BAA-39]
 gi|57286795|gb|AAW38889.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus COL]
 gi|87126393|gb|ABD20907.1| transcriptional regulator, Cro/CI family-related protein
          [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87201689|gb|ABD29499.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|160367429|gb|ABX28400.1| possible transcriptional regulator [Staphylococcus aureus subsp.
          aureus USA300_TCH1516]
 gi|253725556|gb|EES94285.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253726891|gb|EES95620.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257859268|gb|EEV82123.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|259159245|gb|EEW44304.1| hypothetical protein SA930_1142 [Staphylococcus aureus 930918-3]
 gi|259162985|gb|EEW47547.1| hypothetical protein SAD30_0759 [Staphylococcus aureus D30]
 gi|269939929|emb|CBI48301.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          TW20]
 gi|282593447|gb|EFB98442.1| transcriptional regulator [Staphylococcus aureus A9765]
 gi|294823131|gb|EFG39562.1| transcriptional regulator [Staphylococcus aureus A9754]
 gi|302750221|gb|ADL64398.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus str. JKD6008]
 gi|304341295|gb|EFM07214.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          ATCC BAA-39]
 gi|315198028|gb|EFU28360.1| possible transcriptional regulator [Staphylococcus aureus subsp.
          aureus CGS01]
 gi|320139343|gb|EFW31222.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus
          MRSA131]
 gi|320142893|gb|EFW34689.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus
          MRSA177]
 gi|329313042|gb|AEB87455.1| Possible transcriptional regulator [Staphylococcus aureus subsp.
          aureus T0131]
 gi|329724264|gb|EGG60777.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21189]
 gi|329732630|gb|EGG68980.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21193]
          Length = 67

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R  L  + LA++AG+   + +  +R         PS  +  KI    NET+ 
Sbjct: 3  NRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57

Query: 71 QLLDLPF 77
           +  +  
Sbjct: 58 TVFIIEE 64


>gi|331090843|ref|ZP_08339689.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399702|gb|EGG79364.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 179

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 16/139 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +  +    NLT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2   QIGQKLKGLRIAKNLTQEELADRAELSKGFISQLERDLT-----SPSISTLVDILQCLGT 56

Query: 68  TICQLLDL---------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           ++                       + + K       P +         +          
Sbjct: 57  SLKDFFQEESDEQIVFGNEDYFEKVDTELKNTVEWIIPNAQKNMMEPIRLTLQPGGSTYP 116

Query: 119 GVPEIRSPHNGIYAIQTQD 137
            +P         Y +Q   
Sbjct: 117 DLP--HEGEEFGYVLQGSI 133


>gi|329941544|ref|ZP_08290809.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
           M045]
 gi|329299261|gb|EGG43161.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
           M045]
          Length = 190

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  ++ KI  A  
Sbjct: 9   QSLARNVRRWRAERGFTLDALAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG--NKWNTVGVPEIR 124
            ++  L        R       +   ++   +G  G   +G    G    W+   +P   
Sbjct: 64  VSLPTL-LDYEQGPRVRVVPADQAVRMWHSEAGGHGRLLAGTEAPGPLEMWDWRLMPGEH 122

Query: 125 SPHNG 129
           SP + 
Sbjct: 123 SPSDP 127


>gi|301066025|ref|YP_003788048.1| double-stranded beta-helix-like protein [Lactobacillus casei str.
           Zhang]
 gi|300438432|gb|ADK18198.1| Double-stranded beta-helix related protein [Lactobacillus casei
           str. Zhang]
          Length = 179

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 42/176 (23%), Gaps = 17/176 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  +  R NLT   L  +  L     ++ +          PS E+ F IL+   +
Sbjct: 2   EIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQS-----SPSLETFFDILSVLGQ 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +          D     +      + Y                  N+   V +       
Sbjct: 57  SPADFFREEPKDSLVYHED---DQVTYLDEEKGYRLKWLVPESNENEMEPVMIDFAAHGI 113

Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +     +   +       L        L+         G+ +         + 
Sbjct: 114 FKTFEPSPAETFVYVVSGRVKL--------LLGEQTYVAKKGETIYFHATKQHQLV 161


>gi|291485886|dbj|BAI86961.1| hypothetical protein BSNT_05082 [Bacillus subtilis subsp. natto
          BEST195]
          Length = 132

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI  A+ R+      T    A++ G+  +  ++ +        + PS + I KI    N
Sbjct: 4  KKIGHAVKRLRTEKKKTVDEAAKEIGISQSYLSRIENNT-----QVPSLKVIEKIADYFN 58

Query: 67 ETICQLLDLPFSDGRTTEKKEK 88
               L     S    T+ ++K
Sbjct: 59 VHKSYLFFDEESLDSFTDPEKK 80


>gi|254792649|ref|YP_003077486.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str.
           TW14359]
 gi|254592049|gb|ACT71410.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str.
           TW14359]
          Length = 200

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  NLT + LA+++G+     +K +R         PS   + ++  A N 
Sbjct: 19  DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTS-----SPSATILSRLANALNI 73

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPE 122
           T+ +L         +      +            G     + P G     +   +P 
Sbjct: 74  TLSKLFAELEMQQNSLVLLADQQQHWIDEE---TGITRWSLSPAGACPELIKVEIPP 127


>gi|229018544|ref|ZP_04175403.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273]
 gi|229024800|ref|ZP_04181236.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272]
 gi|228736511|gb|EEL87070.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272]
 gi|228742756|gb|EEL92897.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273]
          Length = 374

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 50/189 (26%), Gaps = 14/189 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +   +T   LA   G+   S +K +         +P    +  + +  N +
Sbjct: 6   IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I +L+       +   K         F                   ++   +        
Sbjct: 61  IDELISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPL------LL 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187
            +  +                +  +   L      +    D  L+ +  +      ++++
Sbjct: 115 QMGLLFINHHMLTVDTDKRTKILEEAMYLFSRVQEE--SDDVSLVKEAVSFKATCYLILN 172

Query: 188 RRGRSIDLM 196
           R    + L+
Sbjct: 173 RPNEVLQLL 181


>gi|188581153|ref|YP_001924598.1| hypothetical protein Mpop_1900 [Methylobacterium populi BJ001]
 gi|179344651|gb|ACB80063.1| hypothetical protein Mpop_1900 [Methylobacterium populi BJ001]
          Length = 70

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 1/61 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +   +   +         +    A +AG+     +   R   +   R  +   + +
Sbjct: 1  MTDLTFDDVRARLSAAIREAG-SQKAFAARAGVSAGFLSDVIRGRRDPGERVLAAIDLRR 59

Query: 61 I 61
          +
Sbjct: 60 V 60


>gi|168216166|ref|ZP_02641791.1| transcriptional regulator, XRE family [Clostridium perfringens
          NCTC 8239]
 gi|182381613|gb|EDT79092.1| transcriptional regulator, XRE family [Clostridium perfringens
          NCTC 8239]
          Length = 144

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E I++      ++   LA K G+ P+  +  ++    GR   P+ E I KI      + 
Sbjct: 4  GEYINKKRLEKGMSLRELAGKIGISPSYLSDIEK----GRRNAPNNEKIEKISEVLFSSK 59

Query: 70 CQLLDLPF 77
           ++  L  
Sbjct: 60 DEIEKLHD 67


>gi|126740655|ref|ZP_01756341.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126718170|gb|EBA14886.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 138

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           + +    E   +T + L+R+ G+  ++    ++   E R    ST S
Sbjct: 23 GDRVAAAREAAGMTQAELSRRMGIKKSTLTGWEQDLSEPRANKLSTLS 70


>gi|110641376|ref|YP_669106.1| transcriptional regulator [Escherichia coli 536]
 gi|191170900|ref|ZP_03032451.1| probable transcriptional regulator [Escherichia coli F11]
 gi|218689103|ref|YP_002397315.1| putative transcriptional regulator [Escherichia coli ED1a]
 gi|110342968|gb|ABG69205.1| probable transcriptional regulator [Escherichia coli 536]
 gi|190908632|gb|EDV68220.1| probable transcriptional regulator [Escherichia coli F11]
 gi|218426667|emb|CAR07498.1| conserved hypothetical protein , putative transcriptional regulator
           [Escherichia coli ED1a]
 gi|324015721|gb|EGB84940.1| toxin-antitoxin system, antitoxin component, Xre family
           [Escherichia coli MS 60-1]
          Length = 194

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  NLT + LA+++G+     +K +R         PS   + ++  A N 
Sbjct: 13  DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTS-----SPSATILSRLANALNI 67

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPE 122
           T+ +L         +      +            G     + P G     +   +P 
Sbjct: 68  TLSKLFAELEMQQNSLVLLADQQQHWIDEE---TGITRWSLSPAGACPELIKVEIPP 121


>gi|15830918|ref|NP_309691.1| hypothetical protein ECs1664 [Escherichia coli O157:H7 str. Sakai]
 gi|168756532|ref|ZP_02781539.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168771061|ref|ZP_02796068.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168782527|ref|ZP_02807534.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787669|ref|ZP_02812676.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC869]
 gi|195938823|ref|ZP_03084205.1| hypothetical protein EscherichcoliO157_20767 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806950|ref|ZP_03249287.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815716|ref|ZP_03256895.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822642|ref|ZP_03262961.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396624|ref|YP_002270109.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328417|ref|ZP_03444499.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|261224908|ref|ZP_05939189.1| hypothetical protein EscherichiacoliO157_09974 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257236|ref|ZP_05949769.1| hypothetical protein EscherichiacoliO157EcO_15627 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281508|ref|YP_003498326.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|13361128|dbj|BAB35087.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|188999971|gb|EDU68957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356349|gb|EDU74768.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360126|gb|EDU78545.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189372536|gb|EDU90952.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC869]
 gi|208726751|gb|EDZ76352.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732364|gb|EDZ81052.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738127|gb|EDZ85810.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158024|gb|ACI35457.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217318844|gb|EEC27270.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|290761381|gb|ADD55342.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|320638144|gb|EFX07905.1| hypothetical protein ECO5101_18657 [Escherichia coli O157:H7 str.
           G5101]
 gi|320643564|gb|EFX12729.1| hypothetical protein ECO9389_18000 [Escherichia coli O157:H- str.
           493-89]
 gi|320648883|gb|EFX17507.1| hypothetical protein ECO2687_10168 [Escherichia coli O157:H- str. H
           2687]
 gi|320654469|gb|EFX22513.1| hypothetical protein ECO7815_15353 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320664959|gb|EFX32089.1| hypothetical protein ECOSU61_14426 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326346440|gb|EGD70177.1| transcriptional regulator, XRE family [Escherichia coli O157:H7
           str. 1125]
          Length = 194

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + ++ +  NLT + LA+++G+     +K +R         PS   + ++  A N 
Sbjct: 13  DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTS-----SPSATILSRLANALNI 67

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPE 122
           T+ +L         +      +            G     + P G     +   +P 
Sbjct: 68  TLSKLFAELEMQQNSLVLLADQQQHWIDEE---TGITRWSLSPAGACPELIKVEIPP 121


>gi|298369060|ref|ZP_06980378.1| repressor protein CI [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283063|gb|EFI24550.1| repressor protein CI [Neisseria sp. oral taxon 014 str. F0314]
          Length = 247

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             Q  + K    +M P   + D LI++S+    C  ++ +    G +  K +       +
Sbjct: 148 PAQVFQFKMSYDNMSPTILENDFLIIDSSRIDVCDSKVYLVILNGVVHVKRVFYLLSNEV 207

Query: 194 DLM--SLNCC-YPVD---TVEMSDIEWIARIL 219
            +   S N   YP        +S +  I +++
Sbjct: 208 CISNDSNNKMLYPDIVTNVSNISQLRIIGQVI 239


>gi|296877357|ref|ZP_06901397.1| transcriptional regulator [Streptococcus parasanguinis ATCC
          15912]
 gi|296431877|gb|EFH17684.1| transcriptional regulator [Streptococcus parasanguinis ATCC
          15912]
          Length = 72

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K+   +  +  R  L  + LA+ AG+   + +  +R         PS     KI    +
Sbjct: 5  KLKNRLKELRARDGLNQTELAKLAGISRQTISLLERDEYT-----PSIIIALKISQIFH 58


>gi|289168842|ref|YP_003447111.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288908409|emb|CBJ23251.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 141

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 5/89 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + +   L+   LA   G+   +    +    + +      E   ++      ++
Sbjct: 1  MNRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKP-----EKAQQLADFFGVSV 55

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
            LL    +       K+ E  L      
Sbjct: 56 GYLLGYEEAKTLENILKDAEEYLEMTEDD 84


>gi|228924686|ref|ZP_04087872.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|229180805|ref|ZP_04308142.1| Transcriptional regulator, XRE [Bacillus cereus 172560W]
 gi|229191815|ref|ZP_04318789.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
 gi|228591689|gb|EEK49534.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
 gi|228602642|gb|EEK60126.1| Transcriptional regulator, XRE [Bacillus cereus 172560W]
 gi|228834985|gb|EEM80438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 157

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +  I   I  + ++ NLT   LA K G+        +        R+P  + + K+    
Sbjct: 14 NDVIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCF 68

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLL 93
          + +   LL    +     +   K+   +
Sbjct: 69 SVSADYLLGRSVTGEPNEQVTPKDEKDI 96


>gi|255531529|ref|YP_003091901.1| helix-turn-helix domain-containing protein [Pedobacter heparinus
          DSM 2366]
 gi|255344513|gb|ACU03839.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366]
          Length = 121

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S K+I E I  +  +HNL+ + +A    L  +++++ +        ++PS  ++ +I  
Sbjct: 5  LSKKEIGERIKDLRTQHNLSQAFIANILNLSRSNYSQIELGN-----QYPSFNTLHEIAR 59

Query: 64 ATNETICQLLDLPFSDGRTTEK 85
            ++T   LL    +   T   
Sbjct: 60 YYSKTYDWLLHGTDTKAATENP 81


>gi|118592886|ref|ZP_01550274.1| DNA-binding protein, putative [Stappia aggregata IAM 12614]
 gi|118434420|gb|EAV41073.1| DNA-binding protein, putative [Stappia aggregata IAM 12614]
          Length = 191

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/182 (8%), Positives = 42/182 (23%), Gaps = 29/182 (15%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + E H  +   LA++AG+     ++ +   I       S  ++ ++L     
Sbjct: 13  DVGLRLRAIREAHGYSQRELAKRAGVTNGFISQLEAAKINT-----SLSALKRVLDGIPI 67

Query: 68  TICQLLDLPFSDGRTT------------------------EKKEKEIPLLYFPPSGSGGF 103
            + +                                       E ++    + P    G 
Sbjct: 68  GLSEFFAYEPERQEQVFFGADELTEIGKGNISYRQVGNSLFGHELQMLYEVYEPGADTGR 127

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
                          G  E+                 K+         R    +++++  
Sbjct: 128 VMLSHEGEEAGIVIEGRLEVTVGEQRKILGPGDAYLFKSTTPHRFKALRNERCVVVSACT 187

Query: 164 QV 165
             
Sbjct: 188 PP 189


>gi|303233322|ref|ZP_07319992.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4]
 gi|302480567|gb|EFL43657.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4]
          Length = 328

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +++  +   LA K G+   S +K +     G    P  E I  +      +
Sbjct: 3  LADKILELRKQNGWSQEELADKLGVSRQSVSKWE-----GAQSIPDMERIIALSRLFGVS 57


>gi|295103897|emb|CBL01441.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 65

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +       ++T   LA  AG+   + N  ++             SI KIL  T + +  
Sbjct: 7  LKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCR--SICKILDKTLDELFW 63


>gi|262200774|ref|YP_003271982.1| transcriptional regulator [Gordonia bronchialis DSM 43247]
 gi|262084121|gb|ACY20089.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 141

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   I        ++   LA +AG+     ++ +R       R PS + + +I     
Sbjct: 31  QDIGAFIRSQRVAAEVSLRQLAERAGVSNPYLSQIERG-----LRKPSADVLAQIAKGLR 85

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
            +   L               ++  +    
Sbjct: 86  VSAEVLYVRAGILEERPASPVRDALIADDS 115


>gi|315500078|ref|YP_004088881.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
 gi|315418090|gb|ADU14730.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
          Length = 202

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 67/214 (31%), Gaps = 29/214 (13%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            +A+ ++  R  L+    A  AG    ++ + +           +  S  K++ A   ++
Sbjct: 8   GQALAQLRMRARLSQDKAAEAAGTSQPTWARYESGDSRAFLDRLAVRS--KVVRALGFSL 65

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L           E + + + +     +  G    S  F      +             
Sbjct: 66  RDL-----------EAEAELLAIDMPYGTPEGSQGFSAGFSASGGVDLAPFHRPGLQQ-- 112

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
                      + Q   + P  R G + I ++      G+ ++++ R G  + +  + + 
Sbjct: 113 ----------VRIQTDELSPYLRAGSLAIYDTERLPLPGEGVIVRLRDGRSLPRFYVRQA 162

Query: 190 GR-SIDLMSLNCCYPVDTVE---MSDIEWIARIL 219
               ++            ++   M+DI  I  I+
Sbjct: 163 AELWVEYWVAEGDAHRRVIQSLNMADITGIYPIV 196


>gi|62178909|ref|YP_215326.1| regulatory protein Cro (antirepressor) [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168239077|ref|ZP_02664135.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|194734385|ref|YP_002113584.1| hypothetical protein SeSA_A0617 [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|224583087|ref|YP_002636885.1| regulatory protein cro (Antirepressor) [Salmonella enterica
          subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62126542|gb|AAX64245.1| regulatory protein cro (Antirepressor) [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|194709887|gb|ACF89108.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|197288184|gb|EDY27569.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|224467614|gb|ACN45444.1| regulatory protein cro (Antirepressor) [Salmonella enterica
          subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322713364|gb|EFZ04935.1| Regulatory protein cro [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
          Length = 71

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I + + +      +T + LA KAG+   S  + +    + R R+     + ++  A  
Sbjct: 2  ETISQRLKQKRTELKMTQAQLAEKAGMKQQSIQQIESGETK-RPRF-----LLELATALQ 55

Query: 67 ETICQ 71
               
Sbjct: 56 CDPSW 60


>gi|15807441|ref|NP_296174.1| PbsX family transcriptional regulator [Deinococcus radiodurans
          R1]
 gi|6460274|gb|AAF11998.1|AE002075_2 transcriptional regulator, PbsX family [Deinococcus radiodurans
          R1]
          Length = 64

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  +   HNLT + LA K  +   + N  +    +     PS    FK+       I 
Sbjct: 3  NRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYD-----PSLPLAFKLARLFGLRIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DIFQDEG 64


>gi|330683978|gb|EGG95740.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU121]
          Length = 179

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   +  + +  NLT   LA +  L     ++ +          PS E+   IL     
Sbjct: 2  EIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNA-----SPSMETFLNILEVLGT 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          +               +K+E+ I   Y 
Sbjct: 57 SASDFFKETEQQKVIYKKEEQIIYDEYD 84


>gi|256396806|ref|YP_003118370.1| phage repressor [Catenulispora acidiphila DSM 44928]
 gi|256363032|gb|ACU76529.1| putative phage repressor [Catenulispora acidiphila DSM 44928]
          Length = 121

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQ--VNCGDRLLIKP--RTGDIVA-KVLISRRGRSIDL 195
           +    SM+P  R GD +++  A    +  GD ++ +   R G+++  K    R G    L
Sbjct: 19  RVTGASMVPALRDGDFVLVRRARPGRIRPGDVVVARHPARAGELLIIKRAARREGAGWWL 78

Query: 196 MSLNC 200
           +S N 
Sbjct: 79  LSDNE 83


>gi|261823778|ref|YP_003261884.1| XRE family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261607791|gb|ACX90277.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
           WPP163]
          Length = 188

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/107 (10%), Positives = 32/107 (29%), Gaps = 5/107 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+    ++I + +  + +    + +  A + G+      + +R         P+  +++K
Sbjct: 1   MSDELTRRIGDTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGES-----SPTVATLWK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           I    N      ++   +D   T +                      
Sbjct: 56  IATGLNVAFSTFIEPTLADEGVTYRSGAGSTFSESVAGMRAVPLFPY 102


>gi|166030732|ref|ZP_02233561.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC
           27755]
 gi|166029524|gb|EDR48281.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC
           27755]
          Length = 222

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 8/176 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I    +   LT   L  K  +   + +K +         +P    +  +      ++
Sbjct: 8   GTFIAECRKEKGLTQKALGEKLNVTDRAVSKWETGRS-----FPDVAILEDLCQELGISV 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN- 128
            +LL     +    +++ ++I +     +   G+  +           + VP     +  
Sbjct: 63  SELLAGKKIEAEHYQEETEKILVSSISKAQMYGYQIALYGLLLAVMLLIYVPVFILKNRL 122

Query: 129 --GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             GIY I             +       +    N  ++   G  +       D   
Sbjct: 123 NMGIYMIIAVSVIVFVSMVYLNHKIPGKEFRNSNIWLEGFRGGIVFAVIMGMDFAV 178


>gi|157363615|ref|YP_001470382.1| cupin 2 domain-containing protein [Thermotoga lettingae TMO]
 gi|157314219|gb|ABV33318.1| Cupin 2 conserved barrel domain protein [Thermotoga lettingae
          TMO]
          Length = 177

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I R+     LT   LA +  L  +  ++ +           + +++ KIL A   
Sbjct: 2  NIGGKIKRLRLSRGLTQEELAMRTDLSRSFISQLESNKT-----SLAVDTLEKILRALGT 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
           +              +K+++    
Sbjct: 57 DLKAFFSEEEEAKIVFKKEDRIPVY 81


>gi|157362961|ref|YP_001469728.1| XRE family transcriptional regulator [Thermotoga lettingae TMO]
 gi|157313565|gb|ABV32664.1| putative transcriptional regulator, XRE family [Thermotoga
          lettingae TMO]
          Length = 131

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          +I   +    ++HNLT   LA+K G+  +  +K +        R
Sbjct: 34 QIGGQLMAYRKKHNLTQKDLAKKLGISQSMVSKIETGEKNISIR 77


>gi|134102747|ref|YP_001108408.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915370|emb|CAM05483.1| transcriptional regulator, XRE family with cupin sensor
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 187

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 7/133 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++  +   T + L++  G+  ++ ++ +        R PS E +  I  A    
Sbjct: 5   VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQ-----RRPSLELLLPIAQAHQVP 59

Query: 69  ICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           + +L+  P         K  +   +   P +   G   +     G   +    P     +
Sbjct: 60  LDELVGAPPVGDPRVRLKPIRRGDMTVVPLTQQPGGLQAFKMIMGAGRSEPD-PRTHEGY 118

Query: 128 NGIYAIQTQDTRH 140
             +Y +       
Sbjct: 119 EWLYVLSGNLRLV 131


>gi|332365448|gb|EGJ43209.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK355]
          Length = 168

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 37/145 (25%), Gaps = 5/145 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL              ++    Y+    S GF+             +       P 
Sbjct: 57  TTDYLLLEDGDKPEIKSILSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152
                +            ++    +
Sbjct: 117 KFSALVWLTFFLLIASAMAINKALK 141


>gi|328885628|emb|CCA58867.1| Transcriptional regulator, XRE family [Streptomyces venezuelae ATCC
           10712]
          Length = 476

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 5/99 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R+     +    LAR  GL  +  N+ +        R  +   + +I           
Sbjct: 15  LRRLRRERGMNQVELARALGLSTSYLNQIEH-----SQRPLTAPVLLRIAEVFGVDPEFF 69

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            +       T  +          P +       +   P 
Sbjct: 70  SEAEEERLATDLRAALGDEACGAPIAQDEIADVARDHPE 108


>gi|319937023|ref|ZP_08011433.1| hypothetical protein HMPREF9488_02267 [Coprobacillus sp. 29_1]
 gi|319807959|gb|EFW04538.1| hypothetical protein HMPREF9488_02267 [Coprobacillus sp. 29_1]
          Length = 228

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 32/227 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +F+ K++ E +       NLT   L ++ G++ ++  + +  G++ + R      + + L
Sbjct: 6   TFTAKQVGERVKERRTELNLTMPELGKRVGVNKSTIQRYEADGVDPK-RTMIINGLAEAL 64

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYF----------------------PPSGS 100
             T E +  L +    D RT   ++ E  +  +                           
Sbjct: 65  LTTPEWLTGLSEDKEYDSRTLCARDMEEHIKKYLDTVSSVVKGEPHQQLLTTFLGKMIDL 124

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL--- 157
                        + + V   E        YAI+++    +     M             
Sbjct: 125 YTVMAYHFADATAEVDRVAEDEGLKQSLRRYAIESRAIMERVYRKEMELPIEDMKQFLDG 184

Query: 158 ---ILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              I +          L       +         RG    L S N  
Sbjct: 185 ILHIYDEGRTAVKMGDLFGIVTAAEERVAEKEKFRGS---LTSENDD 228


>gi|220928331|ref|YP_002505240.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|219998659|gb|ACL75260.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
          H10]
          Length = 179

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI E I ++  ++ LT   LA +  L     ++ +R         PS  ++  IL +   
Sbjct: 2  KIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLT-----SPSIATLMDILESLGT 56

Query: 68 TICQLLD 74
           I    +
Sbjct: 57 NIKDFFN 63


>gi|242279628|ref|YP_002991757.1| XRE family transcriptional regulator [Desulfovibrio salexigens
          DSM 2638]
 gi|242122522|gb|ACS80218.1| transcriptional regulator, XRE family [Desulfovibrio salexigens
          DSM 2638]
          Length = 294

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S K+I + +         +   +A K G+   +  + ++         P  E++  
Sbjct: 1  MNELSPKEIGQRLKAFRLGSKYSTEEIAAKIGISRAALYRYEKGDP------PKLETLES 54

Query: 61 ILAATNET 68
          I      +
Sbjct: 55 IADLLGVS 62


>gi|327467942|gb|EGF13432.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK330]
          Length = 167

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E + ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           T   LL              ++    Y+    S GF+     
Sbjct: 57  TTDYLLLEDSDKPEIKPVLSEDEKNRYYKEVKSYGFWQVIYI 98


>gi|262373689|ref|ZP_06066967.1| y4mF family transcriptional regulator [Acinetobacter junii SH205]
 gi|262311442|gb|EEY92528.1| y4mF family transcriptional regulator [Acinetobacter junii SH205]
          Length = 183

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 15/144 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I     +H L+   LA +AG+   +    +   +       S   +  I  A +  
Sbjct: 11  VGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVN-----ISLTKLDAIANALDVN 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--------GFFDSGVFPTGNKWNTVGV 120
             QL+  P        K            +               +     G     V  
Sbjct: 66  FKQLVTAPELVDSAVVKTLAWQGTHLESQATLHASIPARTQVELWTWTLAVG--ETYVAE 123

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
           P+ +     IY I+ + +      
Sbjct: 124 PDQQGWQELIYVIEGELSLEFASG 147


>gi|212697019|ref|ZP_03305147.1| hypothetical protein ANHYDRO_01584 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212675989|gb|EEB35596.1| hypothetical protein ANHYDRO_01584 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 67

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I    +   L+   LA+  GL   S    +      +   PS E+ +KI    ++
Sbjct: 4  EIENKIKEFRKEKGLSQHKLAKMVGLKRRSIMAYEN-----KTISPSLETAYKICKVLDK 58

Query: 68 TICQLLDLP 76
           I ++    
Sbjct: 59 DIKEVFIFK 67


>gi|300765733|ref|ZP_07075710.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL
           N1-017]
 gi|300513606|gb|EFK40676.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL
           N1-017]
          Length = 158

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/144 (9%), Positives = 37/144 (25%), Gaps = 12/144 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + ++   +   LA + G         ++       R P  +++ KI    N +  
Sbjct: 4   KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGT-----REPDYQTLLKIAEFFNVST- 57

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
             L     +                        +             + + EI S  +  
Sbjct: 58  DYLLGRDDNNLAETIAAHIDSNASEEDIKEILAYIEEKRKEHVNEEEINITEIASKEDDA 117

Query: 131 ---YAIQTQDT---RHKTQDTSML 148
              +  + +D      +  + +  
Sbjct: 118 VDKFVEENEDFKAVAARVMNDAEA 141


>gi|262283651|ref|ZP_06061416.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA]
 gi|262260708|gb|EEY79409.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA]
          Length = 167

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           T   LL              ++    Y+    S GF+         
Sbjct: 57  TTDYLLLEDSDKPEIKPVLSEDEKDRYYQEVKSYGFWQVLYIFVSA 102


>gi|228943343|ref|ZP_04105795.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228816323|gb|EEM62496.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 157

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + ++ NLT   LA K G+        +        R+P  + + K+    + +
Sbjct: 17 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCFSVS 71

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93
             LL    +D    +   K+   +
Sbjct: 72 ADYLLGRSVTDEPNEQVTPKDEKDI 96


>gi|226313439|ref|YP_002773333.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226096387|dbj|BAH44829.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 185

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 7/152 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   I  + +    T   +A K GL     ++ +R   +     PS +S++KI  A  
Sbjct: 6   ETIGHKIRMIRKERGFTLEIMAGKTGLSKGLLSQVERGISQ-----PSLDSLWKITKALE 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I    +          + +K   L++   +G+      G            +P   + 
Sbjct: 61  SPIIHFFEDIDQKQVHVTRLQKRRQLVFPESTGTYSLLSMGGSAKLGMLEVRLMPGEMAV 120

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
              + +   +         S+   +   + ++
Sbjct: 121 DKFVQSEGEECF--TVITGSVTARFNDEEHVL 150


>gi|182437780|ref|YP_001825499.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326778414|ref|ZP_08237679.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178466296|dbj|BAG20816.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326658747|gb|EGE43593.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 162

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E +        L+   LA   G+     ++ +R       R PS + + +
Sbjct: 1  MASLNVGNLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERG-----LRKPSADVLQQ 55

Query: 61 ILAATNET 68
          +  A   +
Sbjct: 56 VAKALRIS 63


>gi|324989664|gb|EGC21608.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK353]
          Length = 168

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           T   LL              ++    Y+    S GF+         
Sbjct: 57  TTDYLLLEDSDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSA 102


>gi|325107714|ref|YP_004268782.1| hypothetical protein Plabr_1144 [Planctomyces brasiliensis DSM
          5305]
 gi|324967982|gb|ADY58760.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM
          5305]
          Length = 109

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +  E +  + +  NL+   LA + G++ T  +K +   ++   ++P  E I K+  A + 
Sbjct: 2  RFGERLRELRQAKNLSQRDLAEQVGVNFTYISKIENEKLD-FAQFPGEELIRKLAKALDA 60

Query: 68 TICQ 71
             +
Sbjct: 61 DEDE 64


>gi|307301170|ref|ZP_07580932.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
           BL225C]
 gi|307321071|ref|ZP_07600476.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83]
 gi|306893243|gb|EFN24024.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83]
 gi|306903626|gb|EFN34213.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
           BL225C]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  +    +LT   LA ++G+     ++ +R         P+ + + K+ +A   T+  
Sbjct: 15  RLRELRMARDLTLDDLAGRSGVSRAMISRIERGEA-----SPTAQLLAKLCSALGTTLSA 69

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           L     S+     +  ++                     +      V  P  
Sbjct: 70  LFASERSEASPLARHAEQRLWRDPESGYLRRSVSPEGVGSPVDIVEVEFPPG 121


>gi|291516023|emb|CBK65233.1| Helix-turn-helix [Alistipes shahii WAL 8301]
          Length = 69

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+  AI    +   +T   LA  AG+   +  K +R         P+ E + KIL    
Sbjct: 2  DKVGNAIKERRKILKITQRTLAELAGVGINTLTKIERGEGN-----PTIEVLEKILDTLG 56


>gi|257892810|ref|ZP_05672463.1| predicted protein [Enterococcus faecium 1,231,408]
 gi|257829189|gb|EEV55796.1| predicted protein [Enterococcus faecium 1,231,408]
          Length = 163

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + ++ + H  T   LA+K  +   + +  +         +P  E+++ +     +T
Sbjct: 23 LKQLRKEHGHTQEELAKKLAITRQTVSNWENGRS-----FPDHENVYCLAKLYGQT 73


>gi|257886598|ref|ZP_05666251.1| predicted protein [Enterococcus faecium 1,141,733]
 gi|257822652|gb|EEV49584.1| predicted protein [Enterococcus faecium 1,141,733]
          Length = 149

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + ++ + H  T   LA+K  +   + +  +         +P  E+++ +     +T
Sbjct: 9  LKQLRKEHGHTQEELAKKLAITRQTVSNWENGRS-----FPDHENVYCLAKLYGQT 59


>gi|170698980|ref|ZP_02890038.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           IOP40-10]
 gi|170136087|gb|EDT04357.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           IOP40-10]
          Length = 227

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 6/177 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               + +   + R+     L+   LAR +G+      + +          PS + + KI 
Sbjct: 29  DLLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIA 83

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           AA   ++   L     +G      E+   ++      S         P   +++ + +  
Sbjct: 84  AALKVSVAAFLRRHAVNGFEHLAAERAARVVSSSGRFSARALYPEGEPAAAEFHELRIAP 143

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           + +      A           + ++         L+      V   D+       GD
Sbjct: 144 LHTEPGTRRA-PGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199


>gi|169346977|ref|ZP_02865925.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169297036|gb|EDS79160.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
          Length = 180

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 2/101 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   + ++ ++  LT   LA   G+  +  +  +         + + E++   L    ++
Sbjct: 3   IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALATALKLDLKS 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                 L          +E E          S         
Sbjct: 61  FFDDTLLEEDYYLKPLNEELEDERFEEIEVLSENEIVEKQI 101


>gi|167747593|ref|ZP_02419720.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662]
 gi|239623031|ref|ZP_04666062.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167652955|gb|EDR97084.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662]
 gi|239522610|gb|EEQ62476.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 120

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++  I + I  + E    T   LA +AG+     +K +        R  S ES   +L
Sbjct: 1  MVNNFNIAQNIRTLREERGYTIEKLAERAGVSANHMSKVENG-----LRNLSMESYLNVL 55

Query: 63 AATN 66
           A N
Sbjct: 56 EALN 59


>gi|166033316|ref|ZP_02236145.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC
          27755]
 gi|166027673|gb|EDR46430.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC
          27755]
          Length = 260

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S++K    +  + ++ NLT   LA K  +   + +K +R         P+   +  
Sbjct: 8  MYQISNEKFGLFVTELRKKKNLTQKDLAEKLYVSDKTVSKWERGLS-----MPNVVLLIP 62

Query: 61 ILAATNETICQ 71
          I    + T+ +
Sbjct: 63 IADILDVTVTE 73


>gi|163793593|ref|ZP_02187568.1| putative transcriptional regulatory protein [alpha proteobacterium
           BAL199]
 gi|159181395|gb|EDP65910.1| putative transcriptional regulatory protein [alpha proteobacterium
           BAL199]
          Length = 218

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 16/173 (9%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I +AI        +T   LA + GL  +  ++ +R   +      S  ++ +I  A  
Sbjct: 9   QRIGDAIRDRRTSRRMTLGDLAARCGLSVSFLSRVERGHAQS-----SVGNLIRIADALG 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNTVGVPEI 123
            TI  L+  P +                     + G+  + V   G       T+     
Sbjct: 64  GTIHDLIGPPDATTADHGFAVFRSAESMPRAIPATGYRWTPVSTGGAGRAIEATLLELSA 123

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
               +  +A   ++     +             ++      +  GD + ++  
Sbjct: 124 AGSADTRFAHPGEEICFVLEGRV--------RFVVGERTTLLEPGDAIHLRSD 168


>gi|134282471|ref|ZP_01769175.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|167723927|ref|ZP_02407163.1| DNA-binding protein [Burkholderia pseudomallei DM98]
 gi|237508582|ref|ZP_04521297.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|134246028|gb|EBA46118.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|235000787|gb|EEP50211.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
          Length = 94

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+    +   AI ++ E    +   LA  AGL+ +   + +R          S  ++ K
Sbjct: 1  MTALVQ-RFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54

Query: 61 ILAATN 66
          +  A  
Sbjct: 55 LARAFG 60


>gi|89072606|ref|ZP_01159178.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34]
 gi|89051710|gb|EAR57163.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34]
          Length = 213

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 54/215 (25%), Gaps = 12/215 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I R+A+   ++   L     L   + ++          R      + KI    N + 
Sbjct: 4   LERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRE-----LDKIADTLNTS- 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              +     D  T         L                F   N  ++V V   R+    
Sbjct: 58  IGYILTGQVDTGTQATTTISTELDSAATCTYIPVIHRKDFSAYNDGSSVEVISKRAIPQ- 116

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +  + +       + ++      G   +            +    R  +     +    
Sbjct: 117 -HLEREECLGLLIDNENISQCAPVGSYALATKNADYRPKQPVFASVRGSEPDFYHMTQLA 175

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221
              +   S    +P   V   + +    I+   WA
Sbjct: 176 DGVVFSTSQ-PDFPNLFVNNDEFQIHGYIIQSDWA 209


>gi|108804104|ref|YP_644041.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108765347|gb|ABG04229.1| transcriptional regulator, XRE family with cupin sensor
           [Rubrobacter xylanophilus DSM 9941]
          Length = 203

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 43/136 (31%), Gaps = 5/136 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E +  +     LT  GLA ++G+     +K +R       + P+     ++      
Sbjct: 16  RVGERVRMLRRERGLTLEGLAGRSGVSRAMISKVERGE-----KVPTLVVAARLAEGLGV 70

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +L            ++E+ + +              G    G ++    +PE  +  
Sbjct: 71  SLSELAGERERRRVVVVRREERMTMRDPRTGFERQLLSPGFGGRGVEFIRNVIPEGSTSG 130

Query: 128 NGIYAIQTQDTRHKTQ 143
                    +     +
Sbjct: 131 EFPPHRPGVEEYLVVE 146


>gi|312868248|ref|ZP_07728448.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|311095993|gb|EFQ54237.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
          Length = 115

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          E +  + +   LT   +A K G+   ++   +R     +    +   + KIL
Sbjct: 5  ERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIK--KPTQDNLVKLSKIL 54


>gi|303326025|ref|ZP_07356468.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863941|gb|EFL86872.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 76

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 161 SAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI-ARIL 219
            A     G+   I    G+IV + L+        L + N  YP   + ++  EWI  R+ 
Sbjct: 12  RADCPASGELFAITLPHGEIVLRRLLWEED-YFRLCAENPAYPDRRIRLARTEWILGRLA 70

Query: 220 WASQ 223
           W  Q
Sbjct: 71  WVMQ 74


>gi|299536270|ref|ZP_07049583.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1]
 gi|298728256|gb|EFI68818.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1]
          Length = 182

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 44/137 (32%), Gaps = 5/137 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I +M +++ ++   LA +  L  +  +K +          PS  ++ KI    + 
Sbjct: 5   EVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKAT-----PSLVTLSKIAEIFDV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +   +     DG +   K++    +     G      +      N   ++      + +
Sbjct: 60  PMAWFVIQDQFDGISIVSKKERHETVETNELGYQYELLANKSYMSNINPSIVTVHNGAEN 119

Query: 128 NGIYAIQTQDTRHKTQD 144
              Y     +  +    
Sbjct: 120 LAPYTHDNDEFIYVISG 136


>gi|288921266|ref|ZP_06415550.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288347356|gb|EFC81649.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 490

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 4/91 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    + H LT   LA   G D +  +K +     GR       ++  I      +
Sbjct: 20  IGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVE----SGRRAIHDISTLRHIARNLGLS 75

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
              +   P        +  +   +     S 
Sbjct: 76  PEDVGLAPGGLADRRREPPRGSTVEKVAGSQ 106


>gi|317050561|ref|YP_004111677.1| helix-turn-helix domain-containing protein [Desulfurispirillum
          indicum S5]
 gi|316945645|gb|ADU65121.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5]
          Length = 104

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          KI E + +  +   LT + +  + G+      + +R   +G  R  + E + K L 
Sbjct: 3  KILEQLRQRRKELGLTQAQMMLRVGMSRQ---QYQRLESKGNPRLDNLELLAKGLK 55


>gi|228949735|ref|ZP_04111960.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228809949|gb|EEM56345.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 142

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + ++ NLT   LA K G+        +        R+P  + + K+    + +
Sbjct: 2  IGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCFSIS 56


>gi|324992649|gb|EGC24570.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK405]
 gi|324995822|gb|EGC27733.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK678]
 gi|327460052|gb|EGF06391.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK1]
 gi|327488642|gb|EGF20442.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK1058]
          Length = 167

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 5/145 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E + ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL              ++    Y+    S GF+             +       P 
Sbjct: 57  TTDYLLLEEGDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFISALAIFLFFAGSSFPA 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152
                +            ++    +
Sbjct: 117 KFTALVWLTFFLLIASAMAINKALK 141


>gi|320547844|ref|ZP_08042128.1| cro/CI family transcriptional regulator [Streptococcus equinus
          ATCC 9812]
 gi|320447604|gb|EFW88363.1| cro/CI family transcriptional regulator [Streptococcus equinus
          ATCC 9812]
          Length = 65

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + + + ++ + LA   G+   +    ++          S E   KI      TI ++
Sbjct: 5  IQELRKANKVSQAELAEALGVTRQTIISLEKGRYNA-----SLELAHKIAKYFGMTIEEI 59

Query: 73 LDLPF 77
               
Sbjct: 60 FIFDE 64


>gi|319652450|ref|ZP_08006566.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
 gi|317395912|gb|EFV76634.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
          Length = 212

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + +++  +    +   LAR A + P+  ++ +R       +      + K L     
Sbjct: 36 DIGKKVEKFRKEKGYSSRELARIAEITPSMLSQIERGIANPSIQTLKV--LAKALDVPTF 93

Query: 68 TI 69
          + 
Sbjct: 94 SF 95


>gi|303242127|ref|ZP_07328617.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302590314|gb|EFL60072.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 196

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + I ++ E + +    LA   G+   + +  +        R PS   + K+    N +
Sbjct: 13 QRIKQLREENKINQHQLAEILGVKNQTISNYEAGE-----REPSYGVLLKLADYFNVS 65


>gi|228918433|ref|ZP_04081881.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228841238|gb|EEM86432.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 142

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   I  + ++ NLT   LA K G+        +        R+P  + + K+    
Sbjct: 2  IGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYES-----EERFPPHDVLTKLADCF 53


>gi|225874194|ref|YP_002755653.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225793366|gb|ACO33456.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 260

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 59/181 (32%), Gaps = 17/181 (9%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S K+I E I R+  + ++    L R  GL  +  ++ +   +    R     ++ +I   
Sbjct: 24  SEKRIGERIKRLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLR-----NLARIAMV 78

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----WNTVGV 120
            ++ +    +          KK++ + L          FF+S  +   ++    +    V
Sbjct: 79  FSKDLSYFFETEPHTLFRVHKKKERVRLPQTGVDDPTYFFESLGYMVPDRMLDPYYAEFV 138

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
           P  +      +     +  +           + G+ L +     +  GD +     T   
Sbjct: 139 PLKKGTEVRAHVHPGFEFLYVISG---ELEIKHGEKLHV-----LEGGDGVYFDASTPHA 190

Query: 181 V 181
            
Sbjct: 191 Y 191


>gi|255658093|ref|ZP_05403502.1| toxin-antitoxin system, antitoxin component, Xre family
           [Mitsuokella multacida DSM 20544]
 gi|260849858|gb|EEX69865.1| toxin-antitoxin system, antitoxin component, Xre family
           [Mitsuokella multacida DSM 20544]
          Length = 143

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 3/120 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + +R  L+ + +AR  G+  T++NK +        +      + ++   + + I 
Sbjct: 6   QRLRALRKREGLSQTEVARILGITRTAYNKYESGASAPSRK---LRELAQLYHVSTDYIL 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
              D      R  + +       Y   S  G               +  V    S    +
Sbjct: 63  GEEDALAEKLREADARTSSHLRKYLDLSDEGKDIVDITLDAVYARESNDVSSTESSRPRV 122


>gi|182419849|ref|ZP_02951089.1| putative phage repressor [Clostridium butyricum 5521]
 gi|237666894|ref|ZP_04526879.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
 gi|182376397|gb|EDT73979.1| putative phage repressor [Clostridium butyricum 5521]
 gi|237658093|gb|EEP55648.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
          Length = 156

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    ++ NLT + LA+   + P+S    +        R  S E + KI  A N +
Sbjct: 3  IGARIRTSRKKANLTQAELAKLIDVSPSSIRMYE-----TNKRNVSLEILKKISTALNIS 57

Query: 69 ICQ 71
          I  
Sbjct: 58 ISD 60


>gi|153812273|ref|ZP_01964941.1| hypothetical protein RUMOBE_02672 [Ruminococcus obeum ATCC 29174]
 gi|149831680|gb|EDM86767.1| hypothetical protein RUMOBE_02672 [Ruminococcus obeum ATCC 29174]
          Length = 493

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S  ++ E +    +  ++T   LA   G++ +  ++ ++     ++  PS   +  
Sbjct: 1  MKKLSMTRLAELVSGKRKEKSMTQQELADATGINRSLLSRLEK-----KDFIPSIPQLES 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86
          +         +      +    +   
Sbjct: 56 LGECLGFDPDEAFTEQSASRLPSPSP 81


>gi|54298351|ref|YP_124720.1| hypothetical protein lpp2410 [Legionella pneumophila str. Paris]
 gi|53752136|emb|CAH13563.1| hypothetical protein lpp2410 [Legionella pneumophila str. Paris]
          Length = 326

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/185 (10%), Positives = 56/185 (30%), Gaps = 7/185 (3%)

Query: 11  EAIDRMAER------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            A + + ++        ++   LAR   L  ++  +   +G E R +  +T S  ++L  
Sbjct: 29  RASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGL 88

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              +  + +    +     + K     +         G+ ++       +   + +    
Sbjct: 89  DEHSFNRKVGYATTFCDLAKHKI-FDVVEGRSEKDLEGYLNTLEGKDKVQVVCIDLSSSY 147

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                 Y         +     +L  +       ++  ++   G    ++    ++  K 
Sbjct: 148 RKLIRRYFPNAMIVADRFHVIRLLNQFCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKR 207

Query: 185 LISRR 189
           L  R 
Sbjct: 208 LNRRE 212


>gi|302561948|ref|ZP_07314290.1| helix-turn-helix domain-containing protein [Streptomyces
           griseoflavus Tu4000]
 gi|302479566|gb|EFL42659.1| helix-turn-helix domain-containing protein [Streptomyces
           griseoflavus Tu4000]
          Length = 191

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 44/135 (32%), Gaps = 8/135 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+ +   +T + L+   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 9   EVGPRLRRIRKEREVTLAALSEATGISVSTLSRLESG-----LRKPSLELLLPIAQAHQV 63

Query: 68  TICQLL--DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            + +L+             +  +     ++P +   G   +       +      P    
Sbjct: 64  PLDELVGAPPVGDPRIRASEPIRRHGRTHWPLTRQPGGLQAYKVLEPKRRLE-PEPRTHE 122

Query: 126 PHNGIYAIQTQDTRH 140
            +  +Y +  +    
Sbjct: 123 GYEWVYVLSGKLRLV 137


>gi|284050806|ref|ZP_06381016.1| hypothetical protein AplaP_04959 [Arthrospira platensis str.
          Paraca]
          Length = 145

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 22/49 (44%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          + I + + ++ E   L+ + LA+  G+ P + N+ +    +      + 
Sbjct: 9  QDIPQLLRQLREDLELSQAELAQFLGVSPQTINRWENGHSQPSAISINL 57


>gi|258424598|ref|ZP_05687475.1| transcriptional regulator [Staphylococcus aureus A9635]
 gi|257845193|gb|EEV69230.1| transcriptional regulator [Staphylococcus aureus A9635]
          Length = 67

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R  L  + LA++AG+   + +  +R         PS  +  KI    NET+ 
Sbjct: 3  NRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVE 57

Query: 71 QLLDLPF 77
           +  +  
Sbjct: 58 TIFIIEE 64


>gi|229101445|ref|ZP_04232187.1| hypothetical protein bcere0019_6220 [Bacillus cereus Rock3-28]
 gi|228681977|gb|EEL36112.1| hypothetical protein bcere0019_6220 [Bacillus cereus Rock3-28]
          Length = 75

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M   +   I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 1  MVKLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41


>gi|225390253|ref|ZP_03759977.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme
           DSM 15981]
 gi|225043678|gb|EEG53924.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme
           DSM 15981]
          Length = 195

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 44/139 (31%), Gaps = 6/139 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++ + + I R+ E   L+   L++ +G+  +   + +R G       P+  +++KI    
Sbjct: 17  NQIVAKNIKRLREERKLSMDELSKLSGVSKSMLAQIERGGGN-----PTISTLWKISNGM 71

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 L   P S     +  + +  L       +   F          +  + + E   
Sbjct: 72  KVPFDALTVRPKSPYELVKTSDLQPLLEDGGKVKNYSIFPDDENRRFAVY-YLELEEGSY 130

Query: 126 PHNGIYAIQTQDTRHKTQD 144
             +  +     +       
Sbjct: 131 WESEPHLKGAAEFITIFSG 149


>gi|126700771|ref|YP_001089668.1| putative phage DNA-binding protein [Clostridium difficile 630]
 gi|115252208|emb|CAJ70047.1| Transcriptional regulator, Phage-type [Clostridium difficile]
          Length = 253

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + + ++ ++  LT   LA  +G+   +    +        R PS +++ K+  A   
Sbjct: 2   QIGKNLKKIRKQKELTQIQLAEISGISRNALINYEND-----KRIPSIDTLSKLAKALKI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
                     ++  T E     +  L+     S   F
Sbjct: 57  EKTIFYFDIENEVMTNEDVLYLLQSLFPEEYYSFDEF 93


>gi|111019098|ref|YP_702070.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110818628|gb|ABG93912.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 168

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E   ++   LA+ AG+     ++ +R       R PS E + +I      
Sbjct: 25  DIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERG-----LRKPSAEVLGQIAKGLRV 79

Query: 68  TICQLLDLPFSDGRTTEKKEK 88
           +   L        +      +
Sbjct: 80  SSEVLYVQAGYLEQRPHGPLR 100


>gi|257076425|ref|ZP_05570786.1| transcriptional regulatory protein [Ferroplasma acidarmanus fer1]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + +M +   ++   LAR +G+  +   + ++  I      P+ + + KI    N +
Sbjct: 8  LRKMRKSLGISQKELARISGVSQSYIARLEKGEIN-----PAYDKVRKIFEYLNNS 58


>gi|56695338|ref|YP_165686.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56677075|gb|AAV93741.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 193

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 9/139 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  + +   LT   LA   GL     ++ +R   +     PS  ++  I  A    
Sbjct: 13  IGTRMRELRKARGLTLKQLAAATGLSIGYLSQLERQAAD-----PSVRALNVISTALGVG 67

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125
           I      P +                     S G  D  + P  +    +          
Sbjct: 68  INWFFPDPDTVSDPE-ADLVVRADRRRTLRFSSGVRDELISPNLSGQLELIVTTFDPGAG 126

Query: 126 PHNGIYAIQTQDTRHKTQD 144
               +YA + ++     + 
Sbjct: 127 SGAELYAHRGEEAGFIVEG 145


>gi|291520506|emb|CBK75727.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Butyrivibrio fibrisolvens 16/4]
          Length = 97

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I +  +  +L+ + LA + G    +  K +   IE     PS   + +I    N 
Sbjct: 6  DIGNRIKQARKAQHLSQTELANRLGKTMRTVQKYESGEIE-----PSIGILNEIANILNI 60

Query: 68 TICQ 71
          +  +
Sbjct: 61 SPAE 64


>gi|284041803|ref|YP_003392143.1| XRE family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946024|gb|ADB48768.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
           14684]
          Length = 201

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/123 (8%), Positives = 31/123 (25%), Gaps = 6/123 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK 60
           + +   +     +   +   L+  AG+   +    +R           R       +  +
Sbjct: 8   EALARTVRAARRQRGWSQDQLSAHAGISKGALVALERAETNPNLSTLCRIGDALDLNAAQ 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L        +++D                 ++      +         P G  +  V  
Sbjct: 68  LLEQRPTNGLRIVDAAEVAPLWRGPAGGTAAVVLVTGGTAPVELWRWRLPAGEFYENVPY 127

Query: 121 PEI 123
           P+ 
Sbjct: 128 PDG 130


>gi|299822631|ref|ZP_07054517.1| signal peptidase I [Listeria grayi DSM 20601]
 gi|299816160|gb|EFI83398.1| signal peptidase I [Listeria grayi DSM 20601]
          Length = 186

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 7/78 (8%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG--DIVAKVLISRRGRSIDLMS 197
                 SM P    G+ L +N   +    D ++        +   K +I   G  I+  +
Sbjct: 39  VTVNGHSMDPTLHDGEHLFINKVTKPKRFDIIVFPAPDDTKEEYIKRVIGLPGDEIEYKA 98

Query: 198 L----N-CCYPVDTVEMS 210
                N   YP   ++  
Sbjct: 99  DQLYINGKKYPEKYLDSE 116


>gi|217077472|ref|YP_002335190.1| transcriptional regulator, XRE family [Thermosipho africanus
           TCF52B]
 gi|217037327|gb|ACJ75849.1| transcriptional regulator, XRE family [Thermosipho africanus
           TCF52B]
          Length = 177

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 45/169 (26%), Gaps = 14/169 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I  +      T   LA +  L  +  ++ +   +      PS +++ +IL     
Sbjct: 2   KLGKKIKTLRIARGYTQEELADRCDLSRSFISQLENDQV-----SPSIDTLERILRVLGS 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +           +   K  + +P+        G      +         + +       
Sbjct: 57  DLKTFFSTDKRQEKIVFKASERVPMYLDEYGIKGYILMDNIEDKSIDPKLIELAPGA-ET 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
                 +  +  +       L        ++     +VN GD       
Sbjct: 116 EEEDPHEGDEFGYVISGKLEL--------ILDGKVYKVNQGDCFYYCSD 156


>gi|18978166|ref|NP_579523.1| inosine-5'-monophosphate dehydrogenase related protein I
           [Pyrococcus furiosus DSM 3638]
 gi|18893973|gb|AAL81918.1| inosine-5'-monophosphate dehydrogenase related protein I
           [Pyrococcus furiosus DSM 3638]
          Length = 187

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 36/116 (31%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I R+ +   +T   LARKAG+      K +   ++ R    +      I     +   + 
Sbjct: 13  IRRIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNKILRALIECQKAKITAKA 72

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +        T   K +++  L    + S           G+    + V       +
Sbjct: 73  IMSSPIIYVTPTDKVEKVVKLMKKYNISQVPVIEKDRVVGSITERILVRRSLEEED 128


>gi|56963615|ref|YP_175346.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909858|dbj|BAD64385.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 106

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + +   LT   L     +   S +  +        R P T+++ ++      +
Sbjct: 6  ERLKTLRKERQLTQEQLGELINVTKVSISGYENGN-----RTPDTDTLRRLADVFGVS 58


>gi|332705842|ref|ZP_08425918.1| putative transcriptional regulator [Lyngbya majuscula 3L]
 gi|332355634|gb|EGJ35098.1| putative transcriptional regulator [Lyngbya majuscula 3L]
          Length = 76

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S +     + ++ E  NLT   LA   G+  T+ +  +    E     P  + +  ++
Sbjct: 1  MKSQEDQPLTLVKLREHVNLTQMKLAIAVGVSITTISDWENGKAE-----PRLKHVRLLI 55

Query: 63 AATNETICQLLDLPFS 78
               +  +L +    
Sbjct: 56 EILGCSFEELCEAFDQ 71


>gi|329768221|ref|ZP_08259722.1| hypothetical protein HMPREF0428_01419 [Gemella haemolysans M341]
 gi|328837420|gb|EGF87049.1| hypothetical protein HMPREF0428_01419 [Gemella haemolysans M341]
          Length = 119

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            I    E++NL+   LA    ++ ++  + ++       + PS E+I K+  
Sbjct: 9  NYIKSFREKYNLSQYELADLMNVNQSTIARWEKGE-----KTPSHENIAKLDD 56


>gi|291009445|ref|ZP_06567418.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 190

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 7/133 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++  +   T + L++  G+  ++ ++ +        R PS E +  I  A    
Sbjct: 8   VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQ-----RRPSLELLLPIAQAHQVP 62

Query: 69  ICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           + +L+  P         K  +   +   P +   G   +     G   +    P     +
Sbjct: 63  LDELVGAPPVGDPRVRLKPIRRGDMTVVPLTQQPGGLQAFKMIMGAGRSEPD-PRTHEGY 121

Query: 128 NGIYAIQTQDTRH 140
             +Y +       
Sbjct: 122 EWLYVLSGNLRLV 134


>gi|253988215|ref|YP_003039571.1| hypothetical protein PAU_00734 [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|211638791|emb|CAR67408.1| hypothetical protein PA-RVA13-1279 [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
 gi|253779665|emb|CAQ82826.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 101

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 28/99 (28%), Gaps = 6/99 (6%)

Query: 1  MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M     H  + + I +  +   +T   LA + G+     ++ +R              + 
Sbjct: 1  MKMRQDHLLVGKRIQKRRKELGMTAVKLAGQIGISQQQLSRYERGINR-----IDLSHLV 55

Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          +I +  +  I        S        +     +    +
Sbjct: 56 QIASILDTPINWFFLDCCSPATKININKLTDQYIPIAEA 94


>gi|170761839|ref|YP_001788364.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408828|gb|ACA57239.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 136

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +     R +L  + LA+   +   + +  +        R P T ++ K+    N 
Sbjct: 3  EIKDRLKYERLRKDLNQTELAKILNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57

Query: 68 T 68
          +
Sbjct: 58 S 58


>gi|163794569|ref|ZP_02188540.1| Transcriptional regulator, XRE family protein [alpha
           proteobacterium BAL199]
 gi|159180293|gb|EDP64816.1| Transcriptional regulator, XRE family protein [alpha
           proteobacterium BAL199]
          Length = 190

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 45/162 (27%), Gaps = 20/162 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I + +  +      +   LA ++ +   + ++ +   +      P+   + K+ A   
Sbjct: 13  QRIAQRLKGLRAERGWSLDQLATRSAISRATLSRLENAEV-----SPTANVLGKLCAVYG 67

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKW 115
            T+ +L+ +   +     + E +              +  P               G + 
Sbjct: 68  LTMSRLMHMVEGEFPALVRGEAQAVWNDPEIGFRRRSVSPPAQTLAAEALECEIDPGTRI 127

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                P     H+ +               +       GD L
Sbjct: 128 TYDEPPRPGLEHHLLMVNGK--LAVTVGGQTYN--LHPGDCL 165


>gi|325686748|gb|EGD28774.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72]
          Length = 168

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 5/95 (5%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
            + +    +   LA +  +   S +K +          P  E I ++      T   LL 
Sbjct: 9   ELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQVTTDYLLL 63

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                        ++    Y+    S GF+     
Sbjct: 64  EDSDKPEIKPVLSEDEKNRYYKEVKSYGFWQVLYI 98


>gi|295104278|emb|CBL01822.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii
           SL3/3]
          Length = 120

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +  I + I        +T   LA + G+  T  +  +          PS +++  I+
Sbjct: 1   MVDYADIGKRIRACRLAKGMTQEQLANEVGVVVTHISHIETGNSV-----PSLKTLIDII 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
            A + +  +LL +     +          L       +  
Sbjct: 56  NALDCSADELLCIEIKKAKPVFDSWMTEQLADCSADEAKI 95


>gi|297587718|ref|ZP_06946362.1| DNA-binding protein [Finegoldia magna ATCC 53516]
 gi|297574407|gb|EFH93127.1| DNA-binding protein [Finegoldia magna ATCC 53516]
          Length = 172

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  + + + L+   LA +  +   + +K +R         P ++S+ K+    + +
Sbjct: 4  ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSV-----PDSDSLIKLSEILHTS 56


>gi|226322523|ref|ZP_03798041.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758]
 gi|225209017|gb|EEG91371.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758]
          Length = 197

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I  M ++  LT   +A   G      ++ +R       + PS  ++ KI    + + 
Sbjct: 3   GSRIREMRKKRGLTLKEVAEATGYTIGHISQIERD-----LKSPSLVALRKIAVCLDCSE 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
             L+         + ++ K+    Y     +               
Sbjct: 58  VWLIMGDSELSAKSPEEGKKSKESYLVRKENRIPMKIPEIDVSYSI 103


>gi|239627732|ref|ZP_04670763.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517878|gb|EEQ57744.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 94

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I    ++ N+T + LAR+ G   ++ ++ +          PS + + K+  +  ++
Sbjct: 38 IIAARKQQNMTQAELARRVGTQKSNISRLESGNYN-----PSLDFLSKVAESLGKS 88


>gi|183602320|ref|ZP_02963687.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|219682676|ref|YP_002469059.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
          AD011]
 gi|241190254|ref|YP_002967648.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis Bl-04]
 gi|241195660|ref|YP_002969215.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis DSM 10140]
 gi|183218534|gb|EDT89178.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|219620326|gb|ACL28483.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis AD011]
 gi|240248646|gb|ACS45586.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis Bl-04]
 gi|240250214|gb|ACS47153.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis DSM 10140]
 gi|289177969|gb|ADC85215.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis
          BB-12]
 gi|295793241|gb|ADG32776.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis V9]
          Length = 90

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          A+ R  E   LT   LA ++G+   + N+ +R  +      PS +++ ++  A  
Sbjct: 33 AVSRAREEARLTQEQLAERSGVSRVTINRIERGKLN-----PSMKTLSRLARAMG 82


>gi|138893994|ref|YP_001124447.1| hypothetical protein GTNG_0320 [Geobacillus thermodenitrificans
          NG80-2]
 gi|196250338|ref|ZP_03149031.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|134265507|gb|ABO65702.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
          NG80-2]
 gi|196210227|gb|EDY04993.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 260

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLVKLRKEKGLSQEALAEKLNTTRQAISKWENGQG-----FPETEKLLMIANIFEVS 57


>gi|153005820|ref|YP_001380145.1| hypothetical protein Anae109_2962 [Anaeromyxobacter sp. Fw109-5]
 gi|152029393|gb|ABS27161.1| protein of unknown function DUF955 [Anaeromyxobacter sp. Fw109-5]
          Length = 476

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +H  +   +  +  +  LT + LA + G+  +  N  +        R  S   + K
Sbjct: 1  MRDAAH--LGAKVRSLRRQRGLTQAHLAERLGISASYLNLIEHN-----RRSLSAPLLIK 53

Query: 61 ILAAT 65
          +    
Sbjct: 54 LADIL 58


>gi|320536366|ref|ZP_08036407.1| helix-turn-helix protein [Treponema phagedenis F0421]
 gi|320146778|gb|EFW38353.1| helix-turn-helix protein [Treponema phagedenis F0421]
          Length = 102

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + + R+  R N++   LA +A L  T  N  +        RW S  ++ K+  +  
Sbjct: 10 EILAKNLKRLRRRENISQMELALRANLSTTFINSIENQQ-----RWVSPSTLSKLAKSLQ 64

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
              +L     +   T     +   ++
Sbjct: 65 AYPHELFLSDDAPQNTFTGNSEHQHMI 91


>gi|331647039|ref|ZP_08348133.1| transcriptional regulator of post-exponential-phase responses
          (PbsX(xre)family) [Escherichia coli M605]
 gi|331043822|gb|EGI15958.1| transcriptional regulator of post-exponential-phase responses
          (PbsX(xre)family) [Escherichia coli M605]
          Length = 108

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I RM E   L+   LA K+G+     ++ +     G  + P  +++  I      T
Sbjct: 4  IGDNIRRMREAAKLSQQELADKSGVSKAQISRLEN----GTQKNPQIQTVIAIATELGTT 59

Query: 69 ICQLLDLPFS 78
          I +L+     
Sbjct: 60 IEELIFGEEP 69


>gi|300309752|ref|YP_003773844.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072537|gb|ADJ61936.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 89

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             + +++ E +    ++  LT S +AR+ G+   + +  +R   +      S E + ++
Sbjct: 5  PVRTGRQLPELLQAYRKQSGLTQSEVARRLGVTQQNLSSLERNADK-----VSAERLIEL 59

Query: 62 LAATN 66
          L    
Sbjct: 60 LNILG 64


>gi|299534219|ref|ZP_07047570.1| transcriptional regulator, XRE family protein [Comamonas
          testosteroni S44]
 gi|298717866|gb|EFI58872.1| transcriptional regulator, XRE family protein [Comamonas
          testosteroni S44]
          Length = 490

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  +     LT + LA+   L P+  N+ ++       R  +   + KI       I Q
Sbjct: 4  RLRSLRAERGLTQAALAQALELSPSYLNQIEQDQ-----RPLTVAVLLKIHRVLGVDIQQ 58

Query: 72 LLDLPF 77
            +   
Sbjct: 59 FSEDEE 64


>gi|291550735|emb|CBL26997.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 643

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + ++ +    T + +A K G+  +++   +        R P  E + +I      ++ 
Sbjct: 7  EYLTKLRKSRVYTQAQMAEKLGISRSTYTNYENGN-----RTPDFEVLERISEVLACSLD 61

Query: 71 QLLDLPFSDGR 81
          +L     +   
Sbjct: 62 ELFGRKPTYVA 72


>gi|291005623|ref|ZP_06563596.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 200

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 1  MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          M   S  ++  A +  + ER  L+ S +AR++G+   + ++ +      
Sbjct: 1  MGRESAGQVLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNP 49


>gi|283469656|emb|CAQ48867.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          ST398]
          Length = 67

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R  L  + LA+ AG+   + +  +R         PS  +  KI    N
Sbjct: 3  NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFN 53


>gi|264677406|ref|YP_003277312.1| XRE family transcriptional regulator [Comamonas testosteroni
          CNB-2]
 gi|262207918|gb|ACY32016.1| transcriptional regulator, XRE family [Comamonas testosteroni
          CNB-2]
          Length = 490

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  +     LT + LA+   L P+  N+ ++       R  +   + KI       I Q
Sbjct: 4  RLRSLRAERGLTQAALAQALELSPSYLNQIEQDQ-----RPLTVAVLLKIHRVLGVDIQQ 58

Query: 72 LLDLPF 77
            +   
Sbjct: 59 FSEDEE 64


>gi|209542873|ref|YP_002275102.1| XRE family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530550|gb|ACI50487.1| transcriptional regulator, XRE family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 475

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I R+    +L+  GLA + G+ P+  N  +        R  +   + K+  A + 
Sbjct: 5   RIGHIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQ-----RSVTASLLIKLTRALDV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +I  L  +     R    +    PLL      +         P 
Sbjct: 60  SIEALSGVDEQRLRGLLHEALSDPLLGAHAVPAQEIAVLAAQPE 103


>gi|186704310|dbj|BAG30963.1| unnamed protein product [Comamonas testosteroni]
          Length = 495

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  +     LT + LA+   L P+  N+ ++       R  +   + KI       I Q
Sbjct: 9  RLRSLRAERGLTQAALAQALELSPSYLNQIEQDQ-----RPLTVAVLLKIHRVLGVDIQQ 63

Query: 72 LLDLPF 77
            +   
Sbjct: 64 FSEDEE 69


>gi|183598790|ref|ZP_02960283.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827]
 gi|188020996|gb|EDU59036.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827]
          Length = 186

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 16/183 (8%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M+SF+   + I +A+ R  ++  L+ S L+R+AG+  ++ ++ +          PS E++
Sbjct: 1   MSSFTPPIELIAKALVRERQKSGLSLSELSRQAGIAKSTLSQLEAGNGN-----PSIETL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           + I  A +    +L++            +            +     +      + +  V
Sbjct: 56  WAICVALDVPFSRLIEDRHEPVTVIRHGDGIQVSAEHANYLAFLLSAAPANSQRDIYTVV 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG 178
             P  R   +  +     +        +M+           ++  ++  GD +       
Sbjct: 116 AEP-GRDRISEPHMRGVSEHIILMSGRAMVGPL--------DNPTELFPGDYIHYPGDEP 166

Query: 179 DIV 181
            I+
Sbjct: 167 HIM 169


>gi|89069978|ref|ZP_01157310.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516]
 gi|89044426|gb|EAR50557.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516]
          Length = 201

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +  + T    ARKAGL  ++ +K +   +      P+ +++ K+    + 
Sbjct: 19 DLGARVRELRKERDWTLEQAARKAGLARSTLSKIENGQM-----SPTYDALKKLATGLDI 73

Query: 68 TICQLLDLPF 77
          +I QL   P 
Sbjct: 74 SIPQLFTPPS 83


>gi|304438138|ref|ZP_07398081.1| transcriptional regulator [Selenomonas sp. oral taxon 149 str.
          67H29BP]
 gi|304368911|gb|EFM22593.1| transcriptional regulator [Selenomonas sp. oral taxon 149 str.
          67H29BP]
          Length = 128

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIE 47
          +I++ I    E   ++   LA++ G    +S NK ++   +
Sbjct: 3  EIYKRIRARREELGISQEELAKRMGYKSRSSINKIEKGEND 43


>gi|295705639|ref|YP_003598714.1| DNA-binding protein [Bacillus megaterium DSM 319]
 gi|294803298|gb|ADF40364.1| DNA-binding protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + +   ++   LA+  G+   + N  +    +     PS    F++      T+ 
Sbjct: 4  NRIKELRKSKKMSQDELAKVCGVSRQTINAIENNKYD-----PSLTLAFQLAEELGATVD 58

Query: 71 QLLDLP 76
          +L    
Sbjct: 59 ELFLFH 64


>gi|257054325|ref|YP_003132157.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
 gi|256584197|gb|ACU95330.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
          Length = 156

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K I   I +      ++   L++ AG+     ++ +R       R PS E + +I     
Sbjct: 35  KDIGAYIRQQRNHAKISLRQLSKLAGVSNPYLSQIERG-----LRKPSAEILQQIAKGLR 89

Query: 67  ETICQLLDLPFSDGRTTEKKE 87
            +   L        R      
Sbjct: 90  ISAEALYVQAGILDRPVGGPV 110


>gi|308233625|ref|ZP_07664362.1| DNA-binding protein [Atopobium vaginae DSM 15829]
 gi|328944523|ref|ZP_08241984.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829]
 gi|327490924|gb|EGF22702.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829]
          Length = 328

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +++  +   LA K G+   S +K +     G    P  E I  +      +
Sbjct: 3  LADKILELRKQNGWSQEELADKLGVSRQSVSKWE-----GAQSIPDMERIIALSRLFGVS 57


>gi|227505625|ref|ZP_03935674.1| MerR family transcriptional regulator [Corynebacterium striatum
           ATCC 6940]
 gi|227197778|gb|EEI77826.1| MerR family transcriptional regulator [Corynebacterium striatum
           ATCC 6940]
          Length = 468

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 32/129 (24%), Gaps = 5/129 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++    +L+ + LA   GL  +  N+ +        R  +   + +I       
Sbjct: 6   VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S      +   +   L   P       +            V +        
Sbjct: 61  ATFFSRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDIHRRYRNVR 120

Query: 129 GIYAIQTQD 137
              ++ T  
Sbjct: 121 DKLSLATDS 129


>gi|167746879|ref|ZP_02419006.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662]
 gi|317471690|ref|ZP_07931031.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA]
 gi|167653839|gb|EDR97968.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662]
 gi|316900794|gb|EFV22767.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA]
          Length = 194

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 46/194 (23%), Gaps = 26/194 (13%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI------EGRNRWPSTESIFK 60
           +KI + I  + +   LT   LA    +   + +K +R           +        + K
Sbjct: 4   QKIGKLIKTLRKEKQLTQMQLAEHMNISDKTISKWERGLGCPDISFFPKLSGVFDVDLEK 63

Query: 61  IL-------AATNETICQLLDLPFSDGRTTEKKEKEIPLLY----FPPSGSGGFFDSGVF 109
           +L             +  +      +         +  +           +    +    
Sbjct: 64  LLSGRLDVNEVLGGNMKHMQFYICPNCGNLVTALADTAVSCCGKKLRAVQARKAPEDERL 123

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML--PLYRKGDILILNSAIQVNC 167
              +  N   +          Y              SM+   LY + D+    + I    
Sbjct: 124 KVESIENDYFISSPHEMTRDHYI----SFAALLTGDSMMVRRLYPEWDM---QTRIPAFG 176

Query: 168 GDRLLIKPRTGDIV 181
             RL        + 
Sbjct: 177 HGRLFWYCTKHGLY 190


>gi|332653329|ref|ZP_08419074.1| putative helix-turn-helix domain containing protein
          [Ruminococcaceae bacterium D16]
 gi|332518475|gb|EGJ48078.1| putative helix-turn-helix domain containing protein
          [Ruminococcaceae bacterium D16]
          Length = 194

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          +KI   I  +  +  LT   LA++  +   + +K +R   
Sbjct: 4  EKIGALIRSLRTQQGLTQRELAQRLTVSDKAVSKWERGQG 43


>gi|300917947|ref|ZP_07134577.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 115-1]
 gi|300414844|gb|EFJ98154.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 115-1]
          Length = 73

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++ E +  + ++  LT   LA  AGL  +   + +    +     PS E +  +  A  
Sbjct: 4  RLGEKLRDLRKQRGLTLEKLADMAGLSKSYLWELENRESQ----RPSAEKLTALADALG 58


>gi|291280679|ref|YP_003497513.1| transcriptional regulator, XRE family [Deferribacter
          desulfuricans SSM1]
 gi|290755381|dbj|BAI81757.1| transcriptional regulator, XRE family [Deferribacter
          desulfuricans SSM1]
          Length = 80

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I    +   +T + LA++AG+   + +K ++    G+    S  ++F +L     
Sbjct: 5  ELGQFIKAKRKEKKITQADLAKQAGISRQTLSKLEQ----GKLALVSIRTLFVVLDILGY 60

Query: 68 T 68
           
Sbjct: 61 E 61


>gi|228940885|ref|ZP_04103444.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228973814|ref|ZP_04134390.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228980403|ref|ZP_04140713.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis
          Bt407]
 gi|228779223|gb|EEM27480.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis
          Bt407]
 gi|228785839|gb|EEM33842.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228818721|gb|EEM64787.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326941562|gb|AEA17458.1| ans operon repressor protein [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 145

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + ++  L+   LA + G         ++       R P  +++ KI      +
Sbjct: 2  LGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQ-----REPDYDTLKKIADFFEVS 56

Query: 69 ICQLLDLPFSDGRTTEKKEK 88
             LLD   +    +    K
Sbjct: 57 TDYLLDRTQTKEMVSNNPTK 76


>gi|210615280|ref|ZP_03290495.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787]
 gi|210150392|gb|EEA81401.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787]
          Length = 252

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +++K  + +  + +   +T   LA K  +   + +K +R         P+   +  
Sbjct: 1  MYQINNEKFGQFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNS-----MPNVTLLIP 55

Query: 61 ILAATNETICQ 71
          I      T+ +
Sbjct: 56 IADVLGITVTE 66


>gi|167566021|ref|ZP_02358937.1| transcriptional regulator, XRE family protein [Burkholderia
          oklahomensis EO147]
 gi|167573100|ref|ZP_02365974.1| transcriptional regulator, XRE family protein [Burkholderia
          oklahomensis C6786]
          Length = 95

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+    +   AI  + E    +   LA  AGL+ +   + +R          S  ++ K
Sbjct: 1  MTALVQ-RFGAAIRELREARAWSQEQLAEHAGLNRSYVGEIERGTAIA-----SIVTVDK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEK 85
          +  A    I +LL            
Sbjct: 55 LARAFGVPIARLLPPASDPSEPPPP 79


>gi|121609687|ref|YP_997494.1| XRE family transcriptional regulator [Verminephrobacter eiseniae
          EF01-2]
 gi|121554327|gb|ABM58476.1| transcriptional regulator [Verminephrobacter eiseniae EF01-2]
          Length = 178

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  +     ++   LA+ AG+ PT  ++ +R   E     PS  ++  + A   E+
Sbjct: 2  LGKRLHELRLTRGMSLRALAQAAGVSPTLLSQIERGVTE-----PSLSTLRALSAVFGES 56

Query: 69 I 69
          +
Sbjct: 57 M 57


>gi|327473031|gb|EGF18458.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK408]
          Length = 170

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|325688546|gb|EGD30563.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK72]
          Length = 170

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|325917919|ref|ZP_08180091.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325535865|gb|EGD07689.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 66

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E +  +   LA + G+   + N  +    +     PS    F+I     E I 
Sbjct: 3  SRVRELRESNGWSQGELAEQLGVSRQTINALETGKYD-----PSLPLAFRIARLFGEPIE 57

Query: 71 QLLDLPFS 78
          Q+     +
Sbjct: 58 QVFLYEGN 65


>gi|324992265|gb|EGC24187.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK405]
          Length = 169

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|323353576|ref|ZP_08088109.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          VMC66]
 gi|322121522|gb|EFX93285.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          VMC66]
          Length = 170

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|322386654|ref|ZP_08060279.1| cro/CI family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
 gi|321269327|gb|EFX52262.1| cro/CI family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
          Length = 169

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|322390777|ref|ZP_08064288.1| cro/CI family transcriptional regulator [Streptococcus
          parasanguinis ATCC 903]
 gi|321142532|gb|EFX37999.1| cro/CI family transcriptional regulator [Streptococcus
          parasanguinis ATCC 903]
          Length = 169

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|322388761|ref|ZP_08062358.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
 gi|321140380|gb|EFX35888.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
          Length = 169

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|312279272|gb|ADQ63929.1| Transcriptional regulator, xre family [Streptococcus thermophilus
          ND03]
          Length = 170

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|312867912|ref|ZP_07728116.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|311096316|gb|EFQ54556.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
          Length = 170

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|302529084|ref|ZP_07281426.1| predicted protein [Streptomyces sp. AA4]
 gi|302437979|gb|EFL09795.1| predicted protein [Streptomyces sp. AA4]
          Length = 796

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +     +  LT   LA ++G+  ++  + +     GR   P   ++  I  A   T  + 
Sbjct: 52  LRETRRQAGLTQEQLAERSGVSVSTIRRLEN----GRPVDPRMGTVKLIADALGTTPAEQ 107


>gi|296330344|ref|ZP_06872825.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305676051|ref|YP_003867723.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296152612|gb|EFG93480.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414295|gb|ADM39414.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 152

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    +R   + + LA ++G+  +  +K +R         PS + + KI A     
Sbjct: 2   IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHT----NPSVQFLKKISATLEVE 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           + +L D   +         +E   ++   +   G     +F
Sbjct: 58  LTELFD-AETMMYEKISGGEEEWRVHLVQAVQAGMEKEELF 97


>gi|262283472|ref|ZP_06061238.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA]
 gi|262260963|gb|EEY79663.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA]
          Length = 170

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|228988770|ref|ZP_04148846.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228770950|gb|EEM19440.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 63

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +         T S LA K+G+   + +  +     G  + PS +SI  I  A   ++
Sbjct: 4  LHKVKEKRLNKGWTQSKLAEKSGVPQPTISHIEN----GTLKNPSIKSIKNIANALGISL 59

Query: 70 CQ 71
           +
Sbjct: 60 EE 61


>gi|291087102|ref|ZP_06345414.2| DNA-binding protein [Clostridium sp. M62/1]
 gi|291076197|gb|EFE13561.1| DNA-binding protein [Clostridium sp. M62/1]
          Length = 237

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I        LT   +A   G+   + +  +         +P   S+ K+    + 
Sbjct: 23 DIGSKIKAARLEKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 77

Query: 68 T 68
          +
Sbjct: 78 S 78


>gi|282599735|ref|ZP_05971683.2| toxin-antitoxin system, antitoxin component, Xre family
           [Providencia rustigianii DSM 4541]
 gi|282568432|gb|EFB73967.1| toxin-antitoxin system, antitoxin component, Xre family
           [Providencia rustigianii DSM 4541]
          Length = 201

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 62/175 (35%), Gaps = 14/175 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I +A+    ++  L+ S L+RKAG+  ++ ++ +          PS E+++ +  A +
Sbjct: 24  ELISKALAAERQKSGLSISELSRKAGIAKSTLSQLESGSGN-----PSIETLWALCVALD 78

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L++   +        E            +     +      + +  V  P  R  
Sbjct: 79  IPFSRLIEEKRAAVTVIRHGEGTPVSAEHANYLAYLLSSAPANSLRDIYTVVAQP-GRDR 137

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
            +  +     +        +++           ++ I++N GD +  +     I+
Sbjct: 138 ISEPHMHDVTEHIILMSGRALVGPL--------DNPIELNVGDYIHYRGDEPHIM 184


>gi|255103226|ref|ZP_05332203.1| hypothetical protein CdifQCD-6_20608 [Clostridium difficile
          QCD-63q42]
          Length = 149

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E + ++  +  L    LA    +  ++    +        R P  ESI K+    N T 
Sbjct: 3  GERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQ-----RTPPAESIVKLAEYFNVTT 57

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLY 94
            LL    ++   +        ++ 
Sbjct: 58 DYLLGHTKTNYSVSANIPGMPSIIC 82


>gi|303235344|ref|ZP_07321962.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
 gi|302493658|gb|EFL53446.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
          Length = 174

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  + + + L+   LA +  +   + +K +R         P ++S+ K+    + +
Sbjct: 4  ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSV-----PDSDSLIKLSEILHTS 56


>gi|300909985|ref|ZP_07127445.1| probable transcriptional regulator [Lactobacillus reuteri SD2112]
 gi|300892633|gb|EFK85993.1| probable transcriptional regulator [Lactobacillus reuteri SD2112]
          Length = 234

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + +   LT   +A   G+   + ++ +        R P  E+  K+    + T+ 
Sbjct: 9  NRIAELRKEKGLTLQQVADAIGVGNNTISRYETG-----KREPKLETWQKLANYFDVTVY 63

Query: 71 QLLDL 75
           L   
Sbjct: 64 YLQGY 68


>gi|295697360|ref|YP_003590598.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
 gi|295412962|gb|ADG07454.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
          Length = 70

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           E +  +     +T   LA KAG+  +     +        R      + KI  A  
Sbjct: 8  GERLKELRRERGMTVRELAEKAGVSQSYIYAVEAGT-----RGSRVGKLIKIARALE 59


>gi|291456538|ref|ZP_06595928.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bifidobacterium breve DSM 20213]
 gi|291381815|gb|EFE89333.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bifidobacterium breve DSM 20213]
          Length = 137

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I R  +   +T + LA   GL   +    +      +      E +  I      +
Sbjct: 3  VGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKP-----ELLESIADTLGVS 57


>gi|315230325|ref|YP_004070761.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus
           barophilus MP]
 gi|315183353|gb|ADT83538.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus
           barophilus MP]
          Length = 186

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I R+ +   +T   LA++AG+      K +   ++     P   +  +IL A  +     
Sbjct: 13  IRRIRKELGITQEELAKRAGVTQAYIAKLESGKVD-----PRLSTFNRILEALLQCKKAQ 67

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           L             +    +       +           GN
Sbjct: 68  LKAKDVMSSPIIAVKPYDQVDKIIKLMNEHNISQVPVIAGN 108


>gi|169828330|ref|YP_001698488.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
 gi|168992818|gb|ACA40358.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
          Length = 148

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I   I  + +RH L+   LA K  +   +  K +      
Sbjct: 5  IGMNIRVLRKRHKLSQEQLAEKVNVSRQTIAKWENGEAIP 44


>gi|126699269|ref|YP_001088166.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|254975298|ref|ZP_05271770.1| putative transcriptional regulator [Clostridium difficile
           QCD-66c26]
 gi|255092688|ref|ZP_05322166.1| putative transcriptional regulator [Clostridium difficile CIP
           107932]
 gi|255100793|ref|ZP_05329770.1| putative transcriptional regulator [Clostridium difficile
           QCD-63q42]
 gi|255306676|ref|ZP_05350847.1| putative transcriptional regulator [Clostridium difficile ATCC
           43255]
 gi|255314426|ref|ZP_05356009.1| putative transcriptional regulator [Clostridium difficile
           QCD-76w55]
 gi|255517102|ref|ZP_05384778.1| putative transcriptional regulator [Clostridium difficile
           QCD-97b34]
 gi|255650208|ref|ZP_05397110.1| putative transcriptional regulator [Clostridium difficile
           QCD-37x79]
 gi|260683328|ref|YP_003214613.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686924|ref|YP_003218057.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|306520193|ref|ZP_07406540.1| putative transcriptional regulator [Clostridium difficile
           QCD-32g58]
 gi|115250706|emb|CAJ68530.1| Transcriptional regulator, RmlC-type [Clostridium difficile]
 gi|260209491|emb|CBA63038.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212940|emb|CBE04210.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 183

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 65/181 (35%), Gaps = 19/181 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + ++R+    NL+   LA  +G+     ++ ++         P+  +I+KI +  N  
Sbjct: 7   IAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSN-----PTVNTIWKIASGLNVP 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              +L+ P ++     K + ++ +          ++ +        +  + + E  S  +
Sbjct: 62  YTAILEQPQNETFIVSKTDIDVQVSENKDYRLYCYYPNTPTRNFELF-QMELEEGHSYTS 120

Query: 129 GIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             ++ ++Q+     +          +   R+ D +  ++         +      G+   
Sbjct: 121 VGHSEKSQEYIMIIEGQLKLEVNDSIYQLRENDSICFSAES-------IHTYHNQGEKTL 173

Query: 183 K 183
           K
Sbjct: 174 K 174


>gi|86559544|ref|YP_473365.1| putative LexA repressor [Clostridium perfringens CPE str. F4969]
 gi|168215112|ref|ZP_02640737.1| LexA repressor [Clostridium perfringens CPE str. F4969]
 gi|86475816|dbj|BAE78992.1| putative LexA repressor [Clostridium perfringens]
 gi|170713481|gb|EDT25663.1| LexA repressor [Clostridium perfringens CPE str. F4969]
          Length = 393

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193
                 + +  SM  L++  +++I         GD ++       +   K  I ++   +
Sbjct: 283 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIDYLSENNEATCKK-IHKKKDKL 341

Query: 194 DLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222
           +L   +   Y +   +  SDI  I  ++  S
Sbjct: 342 ELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 371



 Score = 37.0 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/64 (12%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   +    + + ++    A++  +  ++ +  +R   E     P   ++ K+    N 
Sbjct: 9  KLATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSE-----PPIYTLVKMSEVMNC 63

Query: 68 TICQ 71
          +I +
Sbjct: 64 SIDE 67


>gi|332798162|ref|YP_004459661.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332695897|gb|AEE90354.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 123

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 5/97 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +  I + I    E+  L+    A   GL      + +R       R  S  ++ K+    
Sbjct: 5   NDAIGKRIREEREKLGLSREEFAEIIGLSDYYIGQLERGE-----RQMSMPTLIKVANCL 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           + ++  L+    S                +       
Sbjct: 60  HVSLDYLVLGRLSFDAAYICDPNNNTYETWDEGFYEI 96


>gi|325689190|gb|EGD31197.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK115]
          Length = 168

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           T   LL              ++    Y+    S GF+         
Sbjct: 57  TTDYLLLEDSDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSA 102


>gi|317120977|ref|YP_004100980.1| XRE family transcriptional regulator [Thermaerobacter marianensis
          DSM 12885]
 gi|315590957|gb|ADU50253.1| transcriptional regulator, XRE family [Thermaerobacter
          marianensis DSM 12885]
          Length = 244

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I    +   L+   LAR+A + P+  +  +R       + PS      +      +
Sbjct: 8  VGNRIRAARQAAGLSVKELARRAHISPSHLSDIERGV-----KHPSLAVAATLAQILGRS 62

Query: 69 ICQLLDLPFSDGRT 82
          +  ++         
Sbjct: 63 LDWVVAGRDPLPDP 76


>gi|291459407|ref|ZP_06598797.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418006|gb|EFE91725.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 173

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +KI   +  +  +  +T   LA    +   + ++ +          P  + + +I  
Sbjct: 1  MDQQKIGALLKELRRQRAVTQEQLAEMLNVSRRTVSRWETGSN-----MPDLDILIEIAD 55

Query: 64 ATNETICQ 71
               I +
Sbjct: 56 YYEIDIRE 63


>gi|260887021|ref|ZP_05898284.1| immunity repressor protein [Selenomonas sputigena ATCC 35185]
 gi|330839199|ref|YP_004413779.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260863083|gb|EEX77583.1| immunity repressor protein [Selenomonas sputigena ATCC 35185]
 gi|329746963|gb|AEC00320.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 135

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I    +   LT   LA+K  L  +     ++         PS  ++  I  AT  +
Sbjct: 3  IGEKIKEARKAAGLTQMELAKKTRLSRSYIGDIEKDRYN-----PSLSTLELIAKATGTS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
          +  L+          +  +   P 
Sbjct: 58 LSALVRNEEQSTTPPDHYDTTSPH 81


>gi|297585237|ref|YP_003701017.1| XRE family transcriptional regulator [Bacillus selenitireducens
          MLS10]
 gi|297143694|gb|ADI00452.1| transcriptional regulator, XRE family [Bacillus selenitireducens
          MLS10]
          Length = 195

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/89 (8%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + + ++ +   ++   LA  +G+  ++ +  +        +  +  ++ K+  A + +
Sbjct: 2  LKDNLKKLRKERGMSMRKLAELSGVSRSTLHDIENLN----MKSTTLNTLEKLADALDVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +  L+            KE ++       
Sbjct: 58 VNYLIVESIEHLIEEYLKEAKMSHSELAH 86


>gi|71276653|ref|ZP_00652924.1| phage-related repressor protein [Xylella fastidiosa Dixon]
 gi|71162525|gb|EAO12256.1| phage-related repressor protein [Xylella fastidiosa Dixon]
          Length = 143

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 23/53 (43%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
            + +++  AI +  +   +TP+ +A+   +   S     + G   + + PS 
Sbjct: 1  MLTGEQLGRAIKQAMQLKGVTPTKMAKHFSVKAPSVYGWIKEGRISKEKLPSL 53


>gi|317470458|ref|ZP_07929846.1| hypothetical protein HMPREF1011_00193 [Anaerostipes sp. 3_2_56FAA]
 gi|316901973|gb|EFV23899.1| hypothetical protein HMPREF1011_00193 [Anaerostipes sp. 3_2_56FAA]
          Length = 216

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +F+ K++ E +       NLT   L ++ G++ ++  + +  G++ + R      + + L
Sbjct: 6   TFTAKQVGERVKERRTELNLTMPELGKRIGVNKSTIQRYEADGVDPK-RTMIINGLAEAL 64

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
             T E +  L +    D RT  +K+ E  +  +  + S        
Sbjct: 65  LTTPEWLTGLSEDKEYDSRTLCEKDLEEHIKKYIDTVSTVVNGEPH 110


>gi|307269275|ref|ZP_07550628.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX4248]
 gi|306514372|gb|EFM82934.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX4248]
          Length = 91

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 4/38 (10%), Positives = 16/38 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          ++  A+ ++ +    +   LA + G   ++  + +   
Sbjct: 30 EVAVALAQLRKELGFSQRELAERVGKPQSTIARIENGT 67


>gi|294678861|ref|YP_003579476.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294477681|gb|ADE87069.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB
           1003]
          Length = 460

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 5/121 (4%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + R+ E   +T + LAR   + P+  N+ +        R  +   + K+ AA    +  
Sbjct: 9   RLKRLREDRGITQASLARALEISPSYLNQIENNQ-----RPLTVPVLLKLNAAFGLDVQL 63

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
             D   +      +            +       +                  S      
Sbjct: 64  FSDADEARLIAELRGALADQGAGASLAEVREIAANMPAVARAIVAMQARLRDLSDRADAL 123

Query: 132 A 132
           A
Sbjct: 124 A 124


>gi|257870572|ref|ZP_05650225.1| predicted protein [Enterococcus gallinarum EG2]
 gi|257804736|gb|EEV33558.1| predicted protein [Enterococcus gallinarum EG2]
          Length = 275

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M  F+ ++I + I       N+T S LA +  +   + +  +R         P  E + +
Sbjct: 1  MNEFNIRQIGQRIASKRRELNMTQSNLADQLLVSYQAISNWERGNT-----LPDIEKLPQ 55

Query: 61 ILAATNETICQ 71
          +      +I +
Sbjct: 56 LATILQLSIDE 66


>gi|125719034|ref|YP_001036167.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36]
 gi|125498951|gb|ABN45617.1| Transcriptional regulator, XRE family, putative [Streptococcus
           sanguinis SK36]
          Length = 168

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 33/138 (23%), Gaps = 5/138 (3%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
            + +    +   LA +  +   S +K +          P  E + ++      T   LL 
Sbjct: 9   ELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKVVELSKIFQVTTDYLLL 63

Query: 75  LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134
                        ++    Y+    S GF+             +       P      + 
Sbjct: 64  EDSDKPEIKPVLSEDEKNRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPAKFTALVW 123

Query: 135 TQDTRHKTQDTSMLPLYR 152
                      ++    +
Sbjct: 124 LSFFLLIASAMAINKALK 141


>gi|78060915|ref|YP_370823.1| transcriptional regulator [Burkholderia sp. 383]
 gi|77968800|gb|ABB10179.1| transcriptional regulator, XRE family with cupin sensor domain
          [Burkholderia sp. 383]
          Length = 211

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 21/43 (48%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
              H+ +   +    +   LT + L+ ++G+  ++ +K++R 
Sbjct: 16 PQLDHQTVGARLRDARKSRGLTLAQLSERSGIAVSTISKAERG 58


>gi|313837698|gb|EFS75412.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes HL037PA2]
 gi|314972637|gb|EFT16734.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes HL037PA3]
 gi|328907505|gb|EGG27271.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium sp. P08]
          Length = 508

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +   +   I    ++H +T + LA       ++ ++ +           S E I +
Sbjct: 1   MDNITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           I  A    I         + R     +    +       +         
Sbjct: 56  IAEALESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 104


>gi|313904771|ref|ZP_07838144.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
           6]
 gi|313470374|gb|EFR65703.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
           6]
          Length = 204

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
               K+ + I    +   +T + LA K G+   + +K +          P T  + ++  
Sbjct: 1   MDQIKVGKFIAACRKEQGMTQANLAEKLGISDRAISKWETGKS-----MPDTGIMLELCE 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                + +LL          +K+ +E  L        
Sbjct: 56  HLKINVNELLSGEKIMAELYDKRAEENLLEMRRQVEE 92


>gi|291536229|emb|CBL09341.1| Predicted transcriptional regulators [Roseburia intestinalis
          M50/1]
          Length = 98

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I R+ E  +LT + LA+K  +  +S N  +          PST  + ++    + +
Sbjct: 2  IADKIKRLREASHLTQTELAKKLNITRSSVNAWEMGISV-----PSTTYLIELALLFHVS 56


>gi|289425420|ref|ZP_06427197.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes SK187]
 gi|289154398|gb|EFD03086.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes SK187]
          Length = 508

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +   +   I    ++H +T + LA       ++ ++ +           S E I +
Sbjct: 1   MDNITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           I  A    I         + R     +    +       +         
Sbjct: 56  IAEALESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 104


>gi|77458573|ref|YP_348078.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
 gi|77382576|gb|ABA74089.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 215

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++ + + R+  + +L+   LAR+ G+      + +          PS + + KI     
Sbjct: 33  ERVAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSV-----PSIKVLCKIAKGLK 87

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
            ++   L+    +G       +   L+    +            
Sbjct: 88  VSVAAFLEHRALEGVAVLSASQSKRLVSASGAFVSRALFPFDVA 131


>gi|329667094|gb|AEB93042.1| signal peptidase I [Lactobacillus johnsonii DPC 6026]
          Length = 216

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186
            + +             SM P +   D +I     ++  GD +++      G +  K +I
Sbjct: 31  FFVLNKYVFANLTVSGISMQPTFENNDRVIALRHAKIKEGDIVIVDAPDEPGAVYIKRVI 90

Query: 187 SRRGRSID 194
              G +I 
Sbjct: 91  GLPGDTIV 98


>gi|313899841|ref|ZP_07833344.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312955456|gb|EFR37121.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 259

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/61 (11%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + + R+ +   ++   LA    +   + +K +          P  E++  +  +   +I 
Sbjct: 5  DNLYRIRKEKGMSQEELAALCDVSRQAISKWENGTAN-----PDMENLKTLSRSLRVSID 59

Query: 71 Q 71
          +
Sbjct: 60 E 60


>gi|297563305|ref|YP_003682279.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847753|gb|ADH69773.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 108

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++ E +    E+   + + L R+AG+  +S  + +  G E     P+  ++ +I  A  
Sbjct: 35 ELAETVRLRREQLGWSQAELGRRAGMPQSSIARFEHGGTE-----PTLPTLERIAEALG 88


>gi|28211763|ref|NP_782707.1| transcriptional regulator [Clostridium tetani E88]
 gi|28204205|gb|AAO36644.1| transcriptional regulator [Clostridium tetani E88]
          Length = 136

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + + + +T   LA K G+  +     +        R PS E + KI      +
Sbjct: 5  LGKKIKSLRKDNKITQEELAIKIGVSTSMVGMYETDA-----RKPSYEVLIKIADYFKVS 59

Query: 69 ICQLLDLPFS 78
          +  LL     
Sbjct: 60 LDYLLRETEY 69


>gi|115352794|ref|YP_774633.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282782|gb|ABI88299.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD]
          Length = 227

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 6/177 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               + +   + R+     L+   LAR +G+      + +          PS + + KI 
Sbjct: 29  DLLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIA 83

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           AA   ++   L     +G      E+   ++      S         P   +++ + +  
Sbjct: 84  AALKVSVAAFLRRHAVNGFEHLAAERAARVVSSSGRFSARALYPEGEPAAAEFHELRIAP 143

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           + +      A           + ++         L+      V   D+       GD
Sbjct: 144 LHTEPGTRRA-PGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199


>gi|295108033|emb|CBL21986.1| Helix-turn-helix. [Ruminococcus obeum A2-162]
          Length = 48

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          M   S++K    +  + +  NLT   LA K  +   + +K +R   
Sbjct: 1  MYQISNEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGVS 46


>gi|289428534|ref|ZP_06430218.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes J165]
 gi|295130785|ref|YP_003581448.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes SK137]
 gi|289158228|gb|EFD06447.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes J165]
 gi|291375959|gb|ADD99813.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes SK137]
          Length = 508

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +   +   I    ++H +T + LA       ++ ++ +           S E I +
Sbjct: 1   MDNITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           I  A    I         + R     +    +       +         
Sbjct: 56  IAEALESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 104


>gi|169335433|ref|ZP_02862626.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258171|gb|EDS72137.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 275

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          KKI   I  + +  NLT   LA K  +   + +K +R   
Sbjct: 4  KKIGTFICSLRKEKNLTQKELADKLNITNKAISKWERGIS 43


>gi|73663000|ref|YP_301781.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495515|dbj|BAE18836.1| putative transcriptional regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 179

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 53/192 (27%), Gaps = 25/192 (13%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I  +     LT   LA +  L     ++ +          PS E+   IL     
Sbjct: 2   EIGKKIKNLRNIKKLTQEELAERTDLSKGYISQIESQYA-----SPSMETFLNILEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS-- 125
           +              +EK   +            G+  +      N+++   +       
Sbjct: 57  SPSDFFKE-----PKSEKVLYKKATQITYDEYDKGYILNWPVSQSNEFDMEPLILTLRAN 111

Query: 126 -PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
             +      ++    +  +   +L        ++ N       GD L  K          
Sbjct: 112 ASYKNFGPSESDTFIYCLKGEVVL--------MLGNQNYYATTGDALYFKANQ----IHR 159

Query: 185 LISRRGRSIDLM 196
           L ++    + +M
Sbjct: 160 LENQTADEVQVM 171


>gi|15964024|ref|NP_384377.1| hypothetical protein SMc00351 [Sinorhizobium meliloti 1021]
 gi|15073200|emb|CAC41708.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti
           1021]
          Length = 197

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  +    +LT   LA ++G+     ++ +R         P+ + + K+ +A   T+  
Sbjct: 20  RLRELRMARDLTLDDLAGRSGVSRAMISRIERGEA-----SPTAQLLAKLCSALGTTLSA 74

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           L     S+     +  ++                     +      V  P  
Sbjct: 75  LFASERSEASPLARHAEQRLWRDPESGYLRRSVSPEGVGSPVDIVEVEFPPG 126


>gi|103485648|ref|YP_615209.1| XRE family transcriptional regulator [Sphingopyxis alaskensis
          RB2256]
 gi|98975725|gb|ABF51876.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis
          RB2256]
          Length = 93

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +   +   +    E    +   LAR+ G+   + N  +    +     PS     ++   
Sbjct: 22 TGAAVENRVREYREAAGWSQGELARRLGVSRQTINAVETDKYD-----PSLPLALRMARL 76

Query: 65 TNETICQLLDLPFSD 79
              +C+L    ++ 
Sbjct: 77 FALEVCELFIDHWNP 91


>gi|313902610|ref|ZP_07836010.1| transcriptional regulator of molybdate metabolism, XRE family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467176|gb|EFR62690.1| transcriptional regulator of molybdate metabolism, XRE family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 456

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 10/109 (9%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            + +   +     R  L+   LA +AG+   +    +   +      PS     ++  A 
Sbjct: 52  REGVASRLREARRRLGLSQRELAVRAGVSRQAIGAIEAGRMT-----PSLAVAMRLARAL 106

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
              +  L  L          +           +      D G  P G  
Sbjct: 107 GCRVEDLFRLDE-----PAPEMVVELAPATALATPRQDRDGGPVPAGAG 150


>gi|308175899|ref|YP_003915305.1| helix-turn-helix domain-containing protein [Arthrobacter
          arilaitensis Re117]
 gi|307743362|emb|CBT74334.1| helix-turn-helix domain-containing protein [Arthrobacter
          arilaitensis Re117]
          Length = 66

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S  ++   + R  +++ LT   LA  AG+   +    +R         PS +++  + 
Sbjct: 1  MNSVSELGAELQRARKQNGLTQEQLADLAGISERTLRSIERGAGN-----PSIDAVLSVA 55

Query: 63 AATN 66
              
Sbjct: 56 DVLG 59


>gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252]
 gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252]
          Length = 347

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   I +   R  L+   LA++ G+  T+ +K ++  I      P ++ + ++  A 
Sbjct: 3  IGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVIT-----PDSQMLIRLARAL 54


>gi|169336953|ref|ZP_02620338.2| DNA-binding protein [Clostridium botulinum C str. Eklund]
 gi|169296221|gb|EDS78354.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
          Length = 185

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 41/164 (25%), Gaps = 28/164 (17%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E + ++     LT   LA +  L     ++ +R         PS  ++  IL     
Sbjct: 8   NIGEKLKQLRIEKGLTQMDLASRCELSKGFISQVERDLT-----SPSIATLVDILECLGT 62

Query: 68  TICQLLDLPF-----------------------SDGRTTEKKEKEIPLLYFPPSGSGGFF 104
            +    +                                 +K    P+L           
Sbjct: 63  NLKDFFNNDEEEKIVFSKEDIFESEDTELNYSVQWIIPNAQKNMMEPILVTLQPNGQYKN 122

Query: 105 DSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML 148
           D         +  VG   I   H    A + +   +K +    +
Sbjct: 123 DEPHEGEEFGYVLVGTIYIHLGHKKYKAKKGESFYYKARKNHYI 166


>gi|121998083|ref|YP_001002870.1| AAA ATPase [Halorhodospira halophila SL1]
 gi|121589488|gb|ABM62068.1| AAA ATPase [Halorhodospira halophila SL1]
          Length = 816

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 44/201 (21%), Gaps = 23/201 (11%)

Query: 39  NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
               R  IE     PS  +    L               ++        + +        
Sbjct: 609 QAYFRQEIEAAFSQPSDNTEASTLQPAPVIPLDEQSSTEAEDEPRTIPAEAVTPADNAVP 668

Query: 99  GSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                  +G F  G      +   E       +Y  +      + +  SM      G   
Sbjct: 669 FIELEAAAGEFQAGFAEAERLEETETWIALPELYRARRGLFVARVKGESMNRRIPNGAWC 728

Query: 158 ILNSAIQVNCGDRLLIKPRTG--------DIVAKVLISRR---------GRSIDLMSL-- 198
           +  +    +   R+++              +  K   S +            I L     
Sbjct: 729 LFEANPGGSRHGRVVLAYHRDIQDPDNNSALTVKRYYSEKITSADGQWQHSRITLACDTL 788

Query: 199 NCCYPVDTVEMS---DIEWIA 216
              Y    +E     D+  + 
Sbjct: 789 TPGYEDIVLEEEQARDLRILG 809


>gi|323126868|gb|ADX24165.1| putative transcriptional regulator [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 113

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  +  +  LT S +A+K G+   ++   +R   +     P+ +++ K+    N +
Sbjct: 5  ERLKLLRTQAKLTQSQIAKKLGVSQQAYGDWERGVKK-----PTQDNLVKLSNIFNVS 57


>gi|312863214|ref|ZP_07723452.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
 gi|311100750|gb|EFQ58955.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
          Length = 158

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  + + H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2  IGENIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56

Query: 69 ICQ 71
             
Sbjct: 57 YID 59


>gi|302388982|ref|YP_003824803.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
 gi|302199610|gb|ADL07180.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
          Length = 135

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           E +  + +   ++   LAR   +  ++  K +        R P  E++ KI    
Sbjct: 4  GERLQELRKEKGISREELARALQVSYSAIAKYETNV-----RKPDQETLKKIADYF 54


>gi|218673348|ref|ZP_03523017.1| putative transcriptional regulator [Rhizobium etli GR56]
          Length = 125

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EA+ R+  R  ++   +A    + P   +  +     G+   P+ + + +
Sbjct: 1  MTPF-----GEAVRRLRARKGVSQKEMAEALNVSPAYLSALE----HGKRGLPTFDLLQR 51

Query: 61 ILAATNETICQ 71
          I    N    +
Sbjct: 52 IAGYFNIIWDE 62


>gi|148548690|ref|YP_001268792.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148512748|gb|ABQ79608.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 104

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   +  A+ R  +   LT + LA + G DP + ++ +          PS ++I     
Sbjct: 1  MTRSALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETNTYT-----PSIDAIMAFAQ 55

Query: 64 ATNETICQLLDLPF 77
                      P 
Sbjct: 56 VLGVKPKDFFAEPD 69


>gi|95928598|ref|ZP_01311345.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans
          DSM 684]
 gi|95135388|gb|EAT17040.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans
          DSM 684]
          Length = 82

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           + S + +   +    +R  L+ +   +  G+D  + +K +R     R      +++F++
Sbjct: 4  KTTSPQSLGLILRAARKRKGLSQTKAGKSVGIDQPTLSKIERGESNAR-----LDTLFRL 58

Query: 62 LAATNET 68
          LAA +  
Sbjct: 59 LAALDME 65


>gi|291567885|dbj|BAI90157.1| putative XRE family transcriptional regulator [Arthrospira
          platensis NIES-39]
          Length = 150

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 22/49 (44%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          + I + + ++ E   L+ + LA+  G+ P + N+ +    +      + 
Sbjct: 14 QDIPQLLRQLREDLELSQAELAQFLGVSPQTINRWENGHSQPSAISINL 62


>gi|229061582|ref|ZP_04198926.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603]
 gi|228717816|gb|EEL69466.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603]
          Length = 118

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I E I  + +   LT   +    G+   + +K ++         PS E+I K+    N
Sbjct: 4  IGERIFDLRKERKLTQEKIGENIGVSKQTISKYEKGIKI-----PSRENIEKLADFFN 56


>gi|168205968|ref|ZP_02631973.1| LexA repressor [Clostridium perfringens E str. JGS1987]
 gi|170662549|gb|EDT15232.1| LexA repressor [Clostridium perfringens E str. JGS1987]
          Length = 365

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193
                 + +  SM  L++  +++I         GD ++       +      I ++   +
Sbjct: 255 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC-KKIHKKKDKL 313

Query: 194 DLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222
           +L   +   Y +   +  SDI  I  ++  S
Sbjct: 314 ELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 343



 Score = 37.8 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +    + + ++    A++  +  ++ +  +R   E     P   ++ K+    N 
Sbjct: 9  RLATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSE-----PPIYTLVKMSEVMNC 63

Query: 68 TICQ 71
          +I +
Sbjct: 64 SIDE 67


>gi|162457184|ref|YP_001619551.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
 gi|161167766|emb|CAN99071.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
          Length = 79

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 6  HKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            +I   I  +      +T + LA K G+   +    ++         PS E  F+I AA
Sbjct: 5  QPQITNVIRTLRFHAGEMTQAELAEKVGVTRQTIVAIEQGRY-----SPSLEVAFRIAAA 59

Query: 65 TNETICQLLDLPF 77
              +  +     
Sbjct: 60 FGVPLEHVFQWKG 72


>gi|53724684|ref|YP_102063.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|121600848|ref|YP_994013.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124384800|ref|YP_001028323.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126450213|ref|YP_001081967.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|167004339|ref|ZP_02270099.1| DNA-binding/cupin domain protein [Burkholderia mallei PRL-20]
 gi|238562539|ref|ZP_00440248.2| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|254176797|ref|ZP_04883454.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254208723|ref|ZP_04915071.1| DNA-binding/cupin domain protein [Burkholderia mallei JHU]
 gi|52428107|gb|AAU48700.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|121229658|gb|ABM52176.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124292820|gb|ABN02089.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126243083|gb|ABO06176.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|147750599|gb|EDK57668.1| DNA-binding/cupin domain protein [Burkholderia mallei JHU]
 gi|160697838|gb|EDP87808.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|238522411|gb|EEP85855.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|243060323|gb|EES42509.1| DNA-binding/cupin domain protein [Burkholderia mallei PRL-20]
          Length = 222

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 6/172 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 36  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 90

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+ + ++      S         P   +++ + +  + + H 
Sbjct: 91  VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHG 150

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              A           + ++     +   L+      V   D+       GD 
Sbjct: 151 APCA-PGTSVNLVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDT 201


>gi|15609154|ref|NP_216533.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          H37Rv]
 gi|148661831|ref|YP_001283354.1| putative transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|167970453|ref|ZP_02552730.1| putative transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|306776255|ref|ZP_07414592.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306972365|ref|ZP_07485026.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307080074|ref|ZP_07489244.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307084649|ref|ZP_07493762.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|2896754|emb|CAA17231.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
          tuberculosis H37Rv]
 gi|148505983|gb|ABQ73792.1| putative transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|308215287|gb|EFO74686.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308358155|gb|EFP47006.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308362088|gb|EFP50939.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308365757|gb|EFP54608.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
          Length = 346

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + +    +   LT   LA   GL   + N+ +       +R P    + K+     
Sbjct: 4  LGDVLAVARKARGLTQIELAELVGLTQPAINRYESG-----DRDPDQHIVAKLAEILG 56


>gi|116494509|ref|YP_806243.1| double-stranded beta-helix-like protein [Lactobacillus casei ATCC
           334]
 gi|191637947|ref|YP_001987113.1| hypothetical protein LCABL_11700 [Lactobacillus casei BL23]
 gi|227535519|ref|ZP_03965568.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239631268|ref|ZP_04674299.1| transcription regulator [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|116104659|gb|ABJ69801.1| Double-stranded beta-helix related protein [Lactobacillus casei
           ATCC 334]
 gi|190712249|emb|CAQ66255.1| Double-stranded beta-helix related protein [Lactobacillus casei
           BL23]
 gi|227186841|gb|EEI66908.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239525733|gb|EEQ64734.1| transcription regulator [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|327382018|gb|AEA53494.1| Electron transfer flavoprotein FAD-binding domain protein
           [Lactobacillus casei LC2W]
 gi|327385175|gb|AEA56649.1| Electron transfer flavoprotein FAD-binding domain protein
           [Lactobacillus casei BD-II]
          Length = 179

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 42/176 (23%), Gaps = 17/176 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  +  R NLT   L  +  L     ++ +          PS E+ F IL+   E
Sbjct: 2   EIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQS-----SPSLETFFDILSVLGE 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +          D     +      + Y                  N+   V +       
Sbjct: 57  SPADFFREEPKDSLVYHED---DQVTYLDEEKGYRLKWLVPESNENEMEPVMIDFAAHGI 113

Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +     +   +       L        L+         G+ +         + 
Sbjct: 114 FKTFEPSPAETFVYVVSGRVKL--------LLGEQTYVAKKGETIYFHATKQHQLV 161


>gi|49185356|ref|YP_028608.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49477744|ref|YP_036632.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|65319812|ref|ZP_00392771.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|229122064|ref|ZP_04251280.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201]
 gi|49179283|gb|AAT54659.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49329300|gb|AAT59946.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|228661407|gb|EEL17031.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201]
          Length = 69

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 9/77 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    H +I             T   LA++ G+   +    ++         PS    FK
Sbjct: 1  MFLLLHNRIV----VCRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFK 51

Query: 61 ILAATNETICQLLDLPF 77
          I     + I  + D   
Sbjct: 52 IANVFEKPITDVFDYQE 68


>gi|310830006|ref|YP_003962363.1| hypothetical protein ELI_4466 [Eubacterium limosum KIST612]
 gi|308741740|gb|ADO39400.1| hypothetical protein ELI_4466 [Eubacterium limosum KIST612]
          Length = 112

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +HK+I + I +     N++   LARK G+ PT     +        +  S +S+ +
Sbjct: 1  MNEINHKEIGQRIRKQRTFLNMSRDELARKIGITPTFLADIELGT-----KGFSLKSLNR 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
                 +   +L  P         +  E+     P 
Sbjct: 56 FCNVLKMSSDAILYGPKEYKGVKYTELLELLECCSPE 92


>gi|300697493|ref|YP_003748154.1| transcriptional regulator [Ralstonia solanacearum CFBP2957]
 gi|299074217|emb|CBJ53762.1| putative transcriptional regulator [Ralstonia solanacearum
          CFBP2957]
          Length = 201

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  A+  + +R  L+   L+R+AG+  +  ++ +R         P+   ++++  A   +
Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVS 74

Query: 69 ICQL 72
          +   
Sbjct: 75 LTDF 78


>gi|296533794|ref|ZP_06896337.1| cro/CI family transcriptional regulator [Roseomonas cervicalis
          ATCC 49957]
 gi|296265880|gb|EFH11962.1| cro/CI family transcriptional regulator [Roseomonas cervicalis
          ATCC 49957]
          Length = 468

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42
          I   I R+ +   LT   LA + G+  +  N  +
Sbjct: 6  IGRTIRRLRQEQGLTQQALASRLGISASYLNLIE 39


>gi|284032671|ref|YP_003382602.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283811964|gb|ADB33803.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836]
          Length = 191

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 7/146 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+ +    T + LA   G+  ++ ++ +        R P+ E +  +  A  
Sbjct: 9   EAVGPRLRRLRQERGTTLTQLAESTGISVSTLSRLEAGQ-----RRPTLELLLPLARAHQ 63

Query: 67  ETICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE-IR 124
             + +L+D P +          K    +  P S   G   +        W    V +   
Sbjct: 64  VQLDELVDAPSTGDPRIHSKPIKRFGAVLIPLSRRPGGLQAFKQIAPPGWPGGEVEQKTH 123

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPL 150
             ++ IY +  +          +L  
Sbjct: 124 EGYDWIYVLSGRLRLVLGDKDFILEA 149


>gi|224282243|ref|ZP_03645565.1| putative phage regulatory protein [Bifidobacterium bifidum NCIMB
          41171]
 gi|311063583|ref|YP_003970308.1| XRE family transcriptional regulator [Bifidobacterium bifidum
          PRL2010]
 gi|313139384|ref|ZP_07801577.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
 gi|310865902|gb|ADP35271.1| XRE family transcriptional regulator [Bifidobacterium bifidum
          PRL2010]
 gi|313131894|gb|EFR49511.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 113

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + + ++  +H +  S LA +AG    + +K          R P++ ++  I  A + T
Sbjct: 5  LGDRMRKLMRQHGINQSQLAARAGTTQPNISKYLAGE-----REPTSSTLANIATALHTT 59


>gi|207724614|ref|YP_002255011.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2]
 gi|206589836|emb|CAQ36797.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2]
          Length = 201

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  A+  + +R  L+   L+R+AG+  +  ++ +R         P+   ++++  A   +
Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVS 74

Query: 69 ICQL 72
          +   
Sbjct: 75 LTDF 78


>gi|254416780|ref|ZP_05030530.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC
          7420]
 gi|254417544|ref|ZP_05031282.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC
          7420]
 gi|196175642|gb|EDX70668.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC
          7420]
 gi|196176520|gb|EDX71534.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC
          7420]
          Length = 77

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             + ++ +R  LT   +A   G+   + +  +    E R     T+++  IL   
Sbjct: 4  GHKLMKLRKRLGLTQKQVADAVGVTDQTVSNWEAGRFEPRLTIRQTQALCSILQCP 59


>gi|148259597|ref|YP_001233724.1| hypothetical protein Acry_0581 [Acidiphilium cryptum JF-5]
 gi|326402804|ref|YP_004282885.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|146401278|gb|ABQ29805.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5]
 gi|325049665|dbj|BAJ80003.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 484

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
             I ++ E+  L    +AR+ GL P+  N+ +        R
Sbjct: 17 GARIRQIREQRGLQQRDIARRLGLSPSYMNQIENDRRPVPPR 58


>gi|83747823|ref|ZP_00944856.1| Transcriptional regulator, MerR family [Ralstonia solanacearum
          UW551]
 gi|207739254|ref|YP_002257647.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609]
 gi|83725470|gb|EAP72615.1| Transcriptional regulator, MerR family [Ralstonia solanacearum
          UW551]
 gi|206592627|emb|CAQ59533.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609]
          Length = 201

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  A+  + +R  L+   L+R+AG+  +  ++ +R         P+   ++++  A   +
Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVS 74

Query: 69 ICQL 72
          +   
Sbjct: 75 LTDF 78


>gi|254203747|ref|ZP_04910107.1| DNA-binding/cupin domain protein [Burkholderia mallei FMH]
 gi|254360225|ref|ZP_04976495.1| DNA-binding/cupin domain protein [Burkholderia mallei 2002721280]
 gi|147745259|gb|EDK52339.1| DNA-binding/cupin domain protein [Burkholderia mallei FMH]
 gi|148029465|gb|EDK87370.1| DNA-binding/cupin domain protein [Burkholderia mallei 2002721280]
          Length = 218

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 6/172 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 32  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+ + ++      S         P   +++ + +  + + H 
Sbjct: 87  VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHG 146

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              A           + ++     +   L+      V   D+       GD 
Sbjct: 147 APCA-PGTSVNLVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDT 197


>gi|116617221|ref|YP_817592.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
 gi|116096068|gb|ABJ61219.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
          Length = 240

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I  + +++ LT    A K  +   S +  +R         P+TE +  I+   + 
Sbjct: 2  EIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKG-----HPTTEMMLLIIEKFDL 56

Query: 68 TICQLLDLPFSDGRTTEKK 86
           +   +  P +     +++
Sbjct: 57 PLDFFIIPPTNSCEDNDEE 75


>gi|297620733|ref|YP_003708870.1| putative LexA repressor [Waddlia chondrophila WSU 86-1044]
 gi|297376034|gb|ADI37864.1| putative LexA repressor [Waddlia chondrophila WSU 86-1044]
          Length = 205

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 54/201 (26%), Gaps = 30/201 (14%)

Query: 1   MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M   +   ++I++ I    + +  +PS   +    G                   + S  
Sbjct: 1   MKGLTKRQREIFDYIQEYIKSNRYSPSYREIMEHFG-------------------FLSIA 41

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           S+ K L                   T      +        S        G    G    
Sbjct: 42  SVSKHLGVLQSKGAITTKKNSRRSITPCDSTPQQK-----ESAEAELPFIGHIMGGVPIE 96

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKP 175
           T  + +  +    +     +    + +  S+     + GD+L+  +  +   G+ ++   
Sbjct: 97  TFPLTQTLTVPKFLVHNVEKTYVLRAKGDSLSQEMIQDGDLLLTEARSEALAGEIIIGAL 156

Query: 176 RTGDIVAKVLISRRGRSIDLM 196
                  K      G S+ L+
Sbjct: 157 EDRRTFVKQYFP-EGNSVRLI 176


>gi|242242403|ref|ZP_04796848.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|242234110|gb|EES36422.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|319401579|gb|EFV89789.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909]
          Length = 179

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/197 (10%), Positives = 56/197 (28%), Gaps = 35/197 (17%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +    NLT   LA +  L     ++ +          PS E+   ++     
Sbjct: 2   DIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHA-----SPSMETFLNLIEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP- 126
           +          +    +K E+ I   Y       G+  + +    N+++   +     P 
Sbjct: 57  SASDFFKESSDEKVLYKKNEQTIYDEY-----DKGYILNWLVTNSNEFDMEPLILTLRPN 111

Query: 127 --HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK- 183
             +      ++    +                      + +  G+++    +   +  K 
Sbjct: 112 ASYKNFKPSESDTFIYCLNGE-----------------VSLQLGNQVYKACKEDVLYFKA 154

Query: 184 ----VLISRRGRSIDLM 196
                L +   + + ++
Sbjct: 155 KDKHRLYNETNKEVKVL 171


>gi|227824270|ref|ZP_03989102.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229827135|ref|ZP_04453204.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC
          49176]
 gi|331084539|ref|ZP_08333639.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|157816229|gb|ABV82121.1| HTH domain protein [Eubacterium saburreum]
 gi|157816232|gb|ABV82123.1| HTH domain protein [Streptococcus salivarius]
 gi|226904769|gb|EEH90687.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229788753|gb|EEP24867.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC
          49176]
 gi|330401089|gb|EGG80683.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 114

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +  +  +T   LA K  +   + +  +R   E     P   ++ KI       +
Sbjct: 11 GKQIRHLRTQSGMTQEELAGKLNVTRQALSNWERDVNE-----PDLNTLKKICFLFGVHM 65

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
                  +   T EKK  +  +     
Sbjct: 66 DDFAKEVITKMETCEKKRNDNLISMIWQ 93


>gi|168204997|ref|ZP_02631002.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170663385|gb|EDT16068.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
          Length = 180

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + ++ ++  LT   LA   G+  +  +  +         + + E++   L    ++
Sbjct: 3  IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALATALKLDLKS 60

Query: 69 ICQLLDLPFSDGRTTEKKE 87
                L          +E
Sbjct: 61 FFDDTLLEEDYYLKPLSEE 79


>gi|220923836|ref|YP_002499138.1| peptidase S24 and S26 domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219948443|gb|ACL58835.1| peptidase S24 and S26 domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 151

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 4/114 (3%)

Query: 111 TGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
            G         E         A         + +   M        D+ +++ ++    G
Sbjct: 28  AGFPSPAEDFIEGALELPRWLAPNPAATFIWRVRSWCMKGAGIHDQDLAVVDRSLHPGPG 87

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
             ++     G++  K L+   G  + L   N   P   +E  +   I  +L  S
Sbjct: 88  AVVVAVAN-GEMSLKRLV-LDGNRLALTFDNPEMPAFGLEDLEECQIWGVLLFS 139


>gi|154484069|ref|ZP_02026517.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC
          27560]
 gi|149735111|gb|EDM50997.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC
          27560]
          Length = 177

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  +     LT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2  DIGKKIKELRILKGLTQEELADRAELTKGFISQVERNHT-----SPSIATLVDILQCLGT 56

Query: 68 TICQLLDLPFSDG 80
           +    +    + 
Sbjct: 57 DLKNFFEDDEDNQ 69


>gi|332299188|ref|YP_004441110.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332182291|gb|AEE17979.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 165

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + S   I + I  + +   LT   L+ +  + P + +K +         +P    + K
Sbjct: 1  METIS---IGKKIAELRKAKGLTQDELSEQLNVSPQAVSKWENDVS-----YPDITLLPK 52

Query: 61 ILAATNETICQ 71
          + A    T+  
Sbjct: 53 LAAVLGVTVDD 63


>gi|325564166|gb|ADZ31423.1| C.PsuNIP [Pseudomonas stutzeri]
          Length = 78

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +A+ R  E   L+   LA +AG+D T  +  +R       R PS   + +I  A  
Sbjct: 8  GQAVRRHRELLRLSQEELADRAGIDRTYISGVERGV-----RNPSLLVMQRIATALG 59


>gi|310828173|ref|YP_003960530.1| transcription regulator [Eubacterium limosum KIST612]
 gi|308739907|gb|ADO37567.1| transcription regulator [Eubacterium limosum KIST612]
          Length = 99

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             + ++ +    T   LA K G+   S +  +        ++PS + + KI    N +
Sbjct: 5  GSKLRQLRQEKGYTQQQLADKLGITKGSVSAYE-----TSAKYPSVDVLRKIAVTLNTS 58


>gi|226309766|ref|YP_002769660.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226092714|dbj|BAH41156.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 69

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   I    +    T   L+ K G+  +     +R       R P+   + KI +   
Sbjct: 4  NQLGNRIRSFRKLKGYTQQSLSDKMGVSLSFVGSLERGT-----RTPTEPVLRKIASTLQ 58

Query: 67 ETICQLL 73
              +L 
Sbjct: 59 VDYDELC 65


>gi|255283309|ref|ZP_05347864.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
          14469]
 gi|255266163|gb|EET59368.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
          14469]
          Length = 224

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 16/38 (42%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          E +  + +++  +   LA K G+   + +K +      
Sbjct: 5  EKLQMLRKKNGYSQEQLADKIGIARQTVSKWENGQAIP 42


>gi|42518326|ref|NP_964256.1| hypothetical protein LJ0240 [Lactobacillus johnsonii NCC 533]
 gi|41582610|gb|AAS08222.1| hypothetical protein LJ_0240 [Lactobacillus johnsonii NCC 533]
          Length = 341

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H ++ + I  + +++NL+  GLA K  +   + +K +          P  E I  +    
Sbjct: 16 HMRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSI-----PDIEKIVSLSELF 70

Query: 66 N 66
           
Sbjct: 71 G 71


>gi|62389267|ref|YP_224669.1| MerR family transcriptional regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|21323134|dbj|BAB97762.1| Predicted transcriptional regulators [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324601|emb|CAF19083.1| transcriptional regulator, MerR family [Corynebacterium glutamicum
           ATCC 13032]
          Length = 474

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 44/173 (25%), Gaps = 13/173 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++    +L+ + LA   GL  +  N+ +        R  +   + +I  A    
Sbjct: 6   VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEAFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S      +       +           +            V + +      
Sbjct: 61  ATFFSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARAMVEMHQRYRNVR 120

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             ++I   +   +T          +   +      +V   D +  +    D +
Sbjct: 121 DKFSIAVDN---RTNTPEERRPIAEAVSM---PHEEVR--DFIYARQNYFDAL 165


>gi|303239261|ref|ZP_07325790.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
           CD2]
 gi|302593306|gb|EFL63025.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
           CD2]
          Length = 125

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 15/131 (11%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I  + +    T   L +  GL   S    +       +R P T+++ K+    + TI 
Sbjct: 3   NRIRELRKELGFTQEELGKMIGLSERSVGSYE-----TSDRDPDTDTLNKLAQIFDCTID 57

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            +L    +     +K+  E   +Y                         +P+        
Sbjct: 58  YMLMRSNTRKTEEKKEMAEAEEMYRVDPDFLIEMCRAKV----------LPDEVRKRLRE 107

Query: 131 YAIQTQDTRHK 141
           YA    +   K
Sbjct: 108 YAAFEMERFLK 118


>gi|300715975|ref|YP_003740778.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061811|emb|CAX58927.1| predicted transcriptional regulator [Erwinia billingiae Eb661]
          Length = 188

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 37/134 (27%), Gaps = 8/134 (5%)

Query: 1   MTSF--SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--- 55
           M     + +++ + +  +      +   LA   G+   S ++ +R          +    
Sbjct: 1   MEPLANTDRRLAQRLADLRLEKGWSLETLAELTGISRASLSRIERGETSPTAALMNRLCI 60

Query: 56  ---ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
               ++ ++L+   E   QLL           +       +  P +        G   +G
Sbjct: 61  AYGLTMSRLLSEVEEQGPQLLRAGAQTVWQDRENGYHRRSVSPPATPFHAELVEGRLQSG 120

Query: 113 NKWNTVGVPEIRSP 126
                   P     
Sbjct: 121 ALIEYDAPPVEGIE 134


>gi|292657070|ref|YP_003536967.1| transcriptional regulator [Haloferax volcanii DS2]
 gi|291370611|gb|ADE02838.1| transcriptional regulator [Haloferax volcanii DS2]
          Length = 70

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +    E  +L+   LA   G+   + N  +R   +     PS E  FK+ A  +  +  L
Sbjct: 5  LRTRREAADLSQGELAEAVGVTRQTINAIERERYD-----PSLELAFKLAAYFDCRVEDL 59

Query: 73 LDLP 76
           D  
Sbjct: 60 FDPE 63


>gi|283783001|ref|YP_003373755.1| DNA-binding protein [Gardnerella vaginalis 409-05]
 gi|298253582|ref|ZP_06977372.1| transcriptional regulator [Gardnerella vaginalis 5-1]
 gi|283441430|gb|ADB13896.1| DNA-binding protein [Gardnerella vaginalis 409-05]
 gi|297532349|gb|EFH71237.1| transcriptional regulator [Gardnerella vaginalis 5-1]
          Length = 328

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +++  +   LA K G+   + +K +     G    P  E I  +      +
Sbjct: 3  LADKILELRKQNGWSQEELADKLGVSRQAVSKWE-----GAQSIPDMERIIALSRLFGVS 57


>gi|302877980|ref|YP_003846544.1| helix-turn-helix domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302580769|gb|ADL54780.1| helix-turn-helix domain protein [Gallionella capsiferriformans
          ES-2]
          Length = 102

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            A+ R      LT S +A++ G   ++ ++ +   I  +   PS  ++ K   A  
Sbjct: 39 LHAVLRARREAGLTQSEIAQRMGTTTSAVSRLESSLISQK-HSPSFSTLKKYAHACG 94


>gi|251779846|ref|ZP_04822766.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084161|gb|EES50051.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 127

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 17/140 (12%)

Query: 1   MTSF----SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M S     + K I + I+   +  NL+   LA +  +   + ++          R P  E
Sbjct: 1   MVSLRGGVTIKTIGQKIEERLQELNLSQKDLADRVNVTEATISRYISGV-----RNPRGE 55

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + +I      T   LL     +        K+   +       G   +          +
Sbjct: 56  ILSRIALTLRLTTDYLLGNTSIEKNNESNINKKYNDISKAFEKKGLSLED--------ID 107

Query: 117 TVGVPEIRSPHNGIYAIQTQ 136
           ++   +I   +     I+  
Sbjct: 108 SIEFEKILDMYMLAKGIKKD 127


>gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA]
          Length = 183

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/177 (9%), Positives = 53/177 (29%), Gaps = 19/177 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + +     +  ++   LA+++GL  +  ++ +R  +      PS  ++  I  A + 
Sbjct: 5   NLGKKVQDFRNKSGMSLRELAKRSGLTASMLSQIERDLVN-----PSIGTLKAIAQALDV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG--------GFFDSGVFPTGNKWNTVG 119
            + +         +   ++ +   + +     +         G  +  +        +  
Sbjct: 60  PMFKFFKDDEPQVQMIVRRGENKTIGHPDADLAYTLLTPDVRGSIEFCMMSIPPGLTSGR 119

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLI 173
            P+        Y ++           S      +GD + +           G  ++ 
Sbjct: 120 NPQEHVGEEVAYVVRGS-VEINVAGVSYQ--LEEGDSIRIPPQTAHQWMNQGGTVVQ 173


>gi|239624525|ref|ZP_04667556.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239520911|gb|EEQ60777.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 177

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +     LT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2  DIGNKLKELRVLKGLTQEELADRAELSKGFISQLERDLT-----SPSIATLMDILQCLGT 56

Query: 68 TICQLL 73
          TI    
Sbjct: 57 TIGDFF 62


>gi|218282117|ref|ZP_03488416.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989]
 gi|218216910|gb|EEC90448.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989]
          Length = 334

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
            +++  T   LA+K G+   S +K +  G       P  + I ++      +   LL   
Sbjct: 26  RKKNGWTQEDLAQKLGVSRQSVSKWESAGAI-----PDLKKIIQLADLFEVSTDYLLKDE 80

Query: 77  FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                T    + +  L       +  + D      
Sbjct: 81  IEKENTDISCDTDCELHRVTMEEANAYMDEKKKAA 115


>gi|167644376|ref|YP_001682039.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167346806|gb|ABZ69541.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 126

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 5/124 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S   +++  A+        LT   LA++ G +    ++ +   + GR        + +
Sbjct: 1   MRSDIFQQLGGALKAARRTKGLTQGQLAKRLGREQGRVSELETDLVRGRLGKDRLTLLAE 60

Query: 61  ILAATN-----ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           I  A +         Q   +                            F+      G++ 
Sbjct: 61  ICDALDLVPVLMPRAQASAMIGLQPGRDANALAHGSGSQHAHGPPRSTFEELFVDLGDED 120

Query: 116 NTVG 119
               
Sbjct: 121 EENP 124


>gi|162454793|ref|YP_001617160.1| putative transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161165375|emb|CAN96680.1| putative transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 357

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+  +  L+   LA+ +G+     ++ +          P+   ++KI  A    
Sbjct: 177 VGANLRRLRTKRGLSLERLAKASGVSRAMLSQIELGQST-----PTINVLWKIARALGVP 231

Query: 69  I 69
            
Sbjct: 232 F 232


>gi|296533427|ref|ZP_06896012.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296266247|gb|EFH12287.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 189

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 7/120 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESI 58
           S  ++ + +    E    + S LA ++G+     +K +R  +       GR       S+
Sbjct: 6   SSAQLAQRLKTEREARGWSLSELAERSGVSKAMISKIERDEVSPTAALLGRLSGAFGLSL 65

Query: 59  FK-ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
            + +  A                R  E       L       +      G  P G     
Sbjct: 66  SQLLARAEQGAGLLARAAAQPVWRDPETGFTRRALTPTAGPPTPLELVWGELPPGQAVEY 125


>gi|291543870|emb|CBL16979.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 194

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
              +    I R+     +T   LA + G+   + +K +R     
Sbjct: 1  MDQIRTGSLIRRLRLEQGMTQLALAERLGVSDKAVSKWERGCGAP 45


>gi|227873925|ref|ZP_03992145.1| transcriptional regulator [Oribacterium sinus F0268]
 gi|227840231|gb|EEJ50641.1| transcriptional regulator [Oribacterium sinus F0268]
          Length = 213

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 5/72 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I         T   +A   G+   + +  +         +P   S+ K+      
Sbjct: 4  DIGSKIKAARMEKKFTQEQVAEVLGVSRQTISNWENGKS-----YPDIISVIKMSECYGV 58

Query: 68 TICQLLDLPFSD 79
          ++  LL      
Sbjct: 59 SLDYLLKGEEKM 70


>gi|237731603|ref|ZP_04562084.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907142|gb|EEH93060.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 178

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +H  +   +  +  +   + S LA + G+      + +R         P+  +++K
Sbjct: 1   MDNLTH-YLATTLKTLRHQREWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL---LYFPPSGSGGFFDSGVFPTGNKWNT 117
           I    N      +  P S+G  T   +++  +   L+           S +   G    +
Sbjct: 55  IATGLNVPFSTFISPPESEGTLTFDPQQQAMVVTPLFPWDPQLCFDHFSILLAPGALSES 114

Query: 118 VGVPEIRSPH 127
                    H
Sbjct: 115 TPHETGVIEH 124


>gi|167465026|ref|ZP_02330115.1| Transcriptional regulator, MerR family protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 181

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +++  +   L+   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5   DIGKKVEKYRKAKGLSSRELAKLAEITPSMLSQIERGLANPSIQTLKV--LAKTLDVPTF 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +              + K++K I         S  F  +      N      VP   S  
Sbjct: 63  SFLLEETNTDDLIVRSSKRKKMIIDNLSYELLSPDFTGNLATAIMN------VPPNTSSS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
             + A + ++     + 
Sbjct: 117 EKLLAHRGEEVAFILEG 133


>gi|320530460|ref|ZP_08031518.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas artemidis F0399]
 gi|320137293|gb|EFW29217.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas artemidis F0399]
          Length = 93

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I EA+        LT   LA K+G+  +  +K +          PS  ++ ++ A     
Sbjct: 30 IIEAMIDARAAAGLTQKELAEKSGIAQSDISKLENGNAN-----PSLRTLQRLAAGMGMR 84

Query: 69 IC 70
          + 
Sbjct: 85 LH 86


>gi|297163316|gb|ADI13028.1| putative transcriptional regulator, XRE family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 101

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + +      ++   LAR+ G+      + +          P  +++   + A    +
Sbjct: 24  GAFLKKARRSRGMSQRALARELGVSQARIAQIENGAST-----PQIDTMAAYITALGGEL 78

Query: 70  CQLLDLPFSDGRTTEKKEKEIP 91
               D      +TT  +     
Sbjct: 79  TLRADFHDHVTQTTWPQPHTTE 100


>gi|297560849|ref|YP_003679823.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845297|gb|ADH67317.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 198

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 11/146 (7%)

Query: 1   MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           M   + +       +   I  +      +   LA++A L  +S ++ +        R  +
Sbjct: 1   MMPMTQEDGELDGLVRRRIRALRVAQGWSLEELAKRAHLSQSSLSRIENG-----RRRLA 55

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            + +  +  A + T+ QL++    D   +   +     + +P  G  G        T   
Sbjct: 56  LDQLVTLARALDTTLDQLVETADDDVVISPMVDGARGRMRWPVKGDPGMSVVRQRVTEPP 115

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140
            +             +  +    T  
Sbjct: 116 PDNPARMRAHPGREWLVVLSGTATLM 141


>gi|288818628|ref|YP_003432976.1| transcriptional regulator of molybdate metabolism
          [Hydrogenobacter thermophilus TK-6]
 gi|288788028|dbj|BAI69775.1| transcriptional regulator of molybdate metabolism
          [Hydrogenobacter thermophilus TK-6]
 gi|308752218|gb|ADO45701.1| transcriptional regulator of molybdate metabolism, XRE family
          [Hydrogenobacter thermophilus TK-6]
          Length = 336

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +     +  L+   LA+  G+  ++ +  +          PS E   K+  A   T+ +L
Sbjct: 5  VKEYRLKRGLSQEELAKLCGMPRSTLSAIESGRAV-----PSVEYAIKLSKALGCTVEEL 59

Query: 73 LDLPF 77
               
Sbjct: 60 FGEEE 64


>gi|253578955|ref|ZP_04856226.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849898|gb|EES77857.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 184

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 5/118 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  +    +L  S L +   +     +  +R   +     PSTE + +        
Sbjct: 3   IGKRIKELRTEADLLQSELGKAVAVSSQVISNIERGYTK-----PSTELVNRCAKYFGVP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
              LL        TTE+KE                 +     T ++       +I + 
Sbjct: 58  ADYLLGRTTEKYSTTEQKEAPALSAKIKDRMDQLQLNPSDLITKSEIPEDSFEDIMTG 115


>gi|239939715|ref|ZP_04691652.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|239986200|ref|ZP_04706864.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           11379]
 gi|291443141|ref|ZP_06582531.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346088|gb|EFE72992.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 190

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 40/157 (25%), Gaps = 21/157 (13%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M+      + +   + R       T   LA ++G+      + ++         PS  + 
Sbjct: 1   MSDLDQLTQSLARNLKRWRGERGFTLDALAARSGVSRGMIIQIEQARTN-----PSVGTT 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSG 107
            K+  A    I  LLD           + + + +                +       + 
Sbjct: 56  VKLADALGVAITTLLDHEQGPQVRLVPESRAVRMWSTEAGSSTTLLVGAEARGPLELWTC 115

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
               G    +   PE       +  +   +   +   
Sbjct: 116 RLMPGEGTTSDPHPEGTVE---LLHVTEGELALQVDG 149


>gi|224148667|ref|XP_002336695.1| predicted protein [Populus trichocarpa]
 gi|222836536|gb|EEE74943.1| predicted protein [Populus trichocarpa]
          Length = 63

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I  +      + + LA   G+   + N  +    +     P   +I ++  
Sbjct: 5  IRELRAERGWSQAALADLLGVSRQTVNAIETGRYD--PSLPLAFAIARVFE 53


>gi|17547851|ref|NP_521253.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430156|emb|CAD16841.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 209

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 52/172 (30%), Gaps = 9/172 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA + G+  +  +  +R         P+   + K+ A  
Sbjct: 17  NERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAA-----SPTAVVLDKLAAGL 71

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             ++  L               +     +  P+      +       +    V V     
Sbjct: 72  GVSLASLFGGEREGVPAQPLMRRAQQAQWRDPASGYVRRNLSPPDWPSPIQLVEVNFPA- 130

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRT 177
                Y    ++   + Q   +       D+++ +   +++ GD L ++   
Sbjct: 131 GARVAYETGGRENAMQQQVWVIDGRI---DVMLGDQRHELHPGDCLAMRLDQ 179


>gi|15841500|ref|NP_336537.1| DNA-binding protein, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31793197|ref|NP_855690.1| regulatory protein [Mycobacterium bovis AF2122/97]
 gi|121637901|ref|YP_978124.1| regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148823233|ref|YP_001287987.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|215404173|ref|ZP_03416354.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|215411712|ref|ZP_03420508.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215427378|ref|ZP_03425297.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|215430939|ref|ZP_03428858.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|215446234|ref|ZP_03432986.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|218753734|ref|ZP_03532530.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|219557982|ref|ZP_03537058.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|224990395|ref|YP_002645082.1| hypothetical regulatory protein [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|253798930|ref|YP_003031931.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254232188|ref|ZP_04925515.1| hypothetical protein TBCG_01970 [Mycobacterium tuberculosis C]
 gi|254364835|ref|ZP_04980881.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|260186992|ref|ZP_05764466.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|260201123|ref|ZP_05768614.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|260205300|ref|ZP_05772791.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289443512|ref|ZP_06433256.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289447635|ref|ZP_06437379.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289554202|ref|ZP_06443412.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289570123|ref|ZP_06450350.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289574694|ref|ZP_06454921.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289746033|ref|ZP_06505411.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          02_1987]
 gi|289750599|ref|ZP_06509977.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289754123|ref|ZP_06513501.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289758134|ref|ZP_06517512.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|289762171|ref|ZP_06521549.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
 gi|294996956|ref|ZP_06802647.1| transcriptional regulator [Mycobacterium tuberculosis 210]
 gi|297634592|ref|ZP_06952372.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297731580|ref|ZP_06960698.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|298525519|ref|ZP_07012928.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|306780036|ref|ZP_07418373.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306784784|ref|ZP_07423106.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306789142|ref|ZP_07427464.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306793476|ref|ZP_07431778.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306797860|ref|ZP_07436162.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306803740|ref|ZP_07440408.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306808314|ref|ZP_07444982.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306968138|ref|ZP_07480799.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|313658913|ref|ZP_07815793.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|13881742|gb|AAK46351.1| DNA-binding protein, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31618789|emb|CAD96893.1| hypothetical regulatory protein [Mycobacterium bovis AF2122/97]
 gi|121493548|emb|CAL72022.1| hypothetical regulatory protein [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|124601247|gb|EAY60257.1| hypothetical protein TBCG_01970 [Mycobacterium tuberculosis C]
 gi|134150349|gb|EBA42394.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148721760|gb|ABR06385.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis F11]
 gi|224773508|dbj|BAH26314.1| hypothetical regulatory protein [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|253320433|gb|ACT25036.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289416431|gb|EFD13671.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289420593|gb|EFD17794.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289438834|gb|EFD21327.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289539125|gb|EFD43703.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289543877|gb|EFD47525.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289686561|gb|EFD54049.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          02_1987]
 gi|289691186|gb|EFD58615.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289694710|gb|EFD62139.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289709677|gb|EFD73693.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
 gi|289713698|gb|EFD77710.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|298495313|gb|EFI30607.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308327075|gb|EFP15926.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308330516|gb|EFP19367.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308334351|gb|EFP23202.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308338152|gb|EFP27003.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308341844|gb|EFP30695.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308345332|gb|EFP34183.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308349633|gb|EFP38484.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308354263|gb|EFP43114.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|323719420|gb|EGB28548.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326903630|gb|EGE50563.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328458685|gb|AEB04108.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 346

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + +    +   LT   LA   GL   + N+ +       +R P    + K+     
Sbjct: 4  LGDVLAVARKARGLTQIELAELVGLTQPAINRYESG-----DRDPDQHIVAKLAEILG 56


>gi|312864492|ref|ZP_07724723.1| transcriptional regulator, AbrB family [Streptococcus downei
          F0415]
 gi|311099619|gb|EFQ57832.1| transcriptional regulator, AbrB family [Streptococcus downei
          F0415]
          Length = 137

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  + ++ + +   LA   G+   + +K +          P   S  ++      +
Sbjct: 2  INKTIQSLRKKADYSQETLAEMVGVSRQTLSKWELGES-----LPDIISSSRLAEIFEIS 56

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
          + +L+        +   + K 
Sbjct: 57 LDELVKGDELPFMSKPTEGKY 77


>gi|326791080|ref|YP_004308901.1| hypothetical protein Clole_1987 [Clostridium lentocellum DSM
          5427]
 gi|326541844|gb|ADZ83703.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 194

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          +K+ E I  +     LT   LA    +   + +K +R   
Sbjct: 4  EKVGELIRSLRIECGLTQKQLADAMNISDKTVSKWERGLG 43


>gi|268609658|ref|ZP_06143385.1| HTH domain protein [Ruminococcus flavefaciens FD-1]
          Length = 298

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + +  +   LT   LA +  + P + +K +       + +P  E + +I    N ++ 
Sbjct: 9   KNLVKRRKELGLTQEQLAVRLNVSPQAVSKWEN------SSYPDGELLPRIARELNISLD 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            L  +   +     +K     +   PP      F   ++     +
Sbjct: 63  ALFGIKIENNERDIEKLVSDEMRITPPEKRAELFMKLMYSAMYAY 107


>gi|256849871|ref|ZP_05555302.1| predicted protein [Lactobacillus crispatus MV-1A-US]
 gi|256713360|gb|EEU28350.1| predicted protein [Lactobacillus crispatus MV-1A-US]
          Length = 71

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + + R  +   LT   LA + G   T+ ++ +         +PS   + +I       
Sbjct: 6  LGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLS-----FPSKRRLSEIAHFLGVK 60

Query: 69 ICQ 71
          +  
Sbjct: 61 VDW 63


>gi|268592412|ref|ZP_06126633.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291312199|gb|EFE52652.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 129

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 18/39 (46%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          ++I   +  + +   L+ S LA+K  +     ++ +R  
Sbjct: 19 EQIGMELSHLRKEKGLSGSDLAKKLKISQQQISRYERGI 57


>gi|147678027|ref|YP_001212242.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146274124|dbj|BAF59873.1| predicted transcriptional regulator [Pelotomaculum
           thermopropionicum SI]
          Length = 283

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 12/208 (5%)

Query: 16  MAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA---------AT 65
           +A      + +   R+A +DP   ++  R  I+        + +              A 
Sbjct: 12  LARAKGDRSINSYGRQAKVDPGYISRLLRLKIKTPPSPGIIKKLADNALAGVTYEELMAA 71

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              +                ++K    L  P +         +        T   PE   
Sbjct: 72  AGYLQYPAGSEELYHIKDALEQKVAEALQKPLAEFLPVMKVPLVSPLACNLTGESPENII 131

Query: 126 PHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
            +  +      D   + +D +M       GD+ I     Q   G+ ++     G +    
Sbjct: 132 RYISVPRELEADFALEIKDDAMIEAGIFPGDVAICRKTSQFKTGEMIVAALAGGKVGI-R 190

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDI 212
            +     S+ L + N       V++ D+
Sbjct: 191 FLLEEAGSLRLRAANALILDREVKLPDV 218


>gi|42519383|ref|NP_965313.1| signal peptidase I [Lactobacillus johnsonii NCC 533]
 gi|41583671|gb|AAS09279.1| signal peptidase I [Lactobacillus johnsonii NCC 533]
          Length = 213

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186
            + +             SM P +   D +I     ++  GD +++      G +  K +I
Sbjct: 28  FFVLNKYVFANLTVSGISMQPTFENNDRVIALRHAKIKEGDIVIVDAPDEPGAVYIKRVI 87

Query: 187 SRRGRSID 194
              G +I 
Sbjct: 88  GLPGDTIV 95


>gi|16080419|ref|NP_391246.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311316|ref|ZP_03593163.1| hypothetical protein Bsubs1_18266 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315643|ref|ZP_03597448.1| hypothetical protein BsubsN3_18182 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320559|ref|ZP_03601853.1| hypothetical protein BsubsJ_18150 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324843|ref|ZP_03606137.1| hypothetical protein BsubsS_18301 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296330426|ref|ZP_06872906.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675972|ref|YP_003867644.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|81637534|sp|O32236|RGHR_BACSU RecName: Full=HTH-type transcriptional repressor rghR; AltName:
           Full=RapGH repressor
 gi|2635879|emb|CAB15371.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2702241|gb|AAB91590.1| Yvan [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|291485899|dbj|BAI86974.1| hypothetical protein BSNT_05102 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296152429|gb|EFG93298.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414216|gb|ADM39335.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 135

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   E +  + E   LT + LA  +G+     ++ +     G  +  + + + + L    
Sbjct: 2   ESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKR-GVPKPATIKKLAEALKIPY 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           E +                 E +  LL    +  
Sbjct: 61  EGLMYKAGYIEEVHEARAPYETKCKLLEKAEAYD 94


>gi|298252935|ref|ZP_06976729.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1]
 gi|297533299|gb|EFH72183.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1]
          Length = 158

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +R  LT + L+ K G+  +  ++ +       +R P+   + +I  A N
Sbjct: 101 ARKRAGLTQAELSEKTGISQSDISRLENG-----SRNPTIALLNRIANALN 146


>gi|291296947|ref|YP_003508345.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279]
 gi|290471906|gb|ADD29325.1| transcriptional regulator, XRE family [Meiothermus ruber DSM
          1279]
          Length = 230

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M++     + + +  +  +  L+   LA  AGL  T  ++ +R       R  S +++ +
Sbjct: 1  MSTL-RTLLAQNLRTLRYQRGLSQEDLADLAGLHRTYVSEVERG-----KRNLSLDNLER 54

Query: 61 ILAATN 66
          +  A  
Sbjct: 55 LANALQ 60


>gi|283783609|ref|YP_003374363.1| toxin-antitoxin system, antitoxin component, Xre family
          [Gardnerella vaginalis 409-05]
 gi|283442067|gb|ADB14533.1| toxin-antitoxin system, antitoxin component, Xre family
          [Gardnerella vaginalis 409-05]
          Length = 94

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +R  LT + L+ K G+  +  ++ +       +R P+   + +I  A N
Sbjct: 37 ARKRAGLTQAELSEKTGISQSDISRLENG-----SRNPTIALLNRIANALN 82


>gi|134097736|ref|YP_001103397.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291006304|ref|ZP_06564277.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133910359|emb|CAM00472.1| transcriptional regulator, XRE family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 399

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +   I E I    +R  L+   LA   G   +  ++ +R      +R      + ++L
Sbjct: 1  MVTEGPIGERIRIYRQRRGLSQKELAHLVGRSESWLSQVERGIRS-VDRLSVLVDVARVL 59

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
              ET+         +G+   +  ++I       +
Sbjct: 60 KTDVETLAGYRMAYAPNGQPELEGLEDIRQAMSAYA 95


>gi|70730070|ref|YP_259809.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68344369|gb|AAY91975.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 208

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +R  LT S LA+++ L     ++ +R        +PS  ++F I  +   T
Sbjct: 29 LGTRIRGLRKRRGLTLSELAQQSELTAGYISQLERNLA-----YPSIPALFNIARSLGVT 83

Query: 69 ICQLLDLPFSDGRTTE 84
          I              +
Sbjct: 84 IQWFFASETQTAPEDQ 99


>gi|28210633|ref|NP_781577.1| putative transcriptional regulator [Clostridium tetani E88]
 gi|28203071|gb|AAO35514.1| putative transcriptional regulator [Clostridium tetani E88]
          Length = 126

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E + ++ +  N +   LA   G+   + +K +          P   ++ K+    N 
Sbjct: 2  EISERLQQLRKLANYSQEQLADMLGVSRQAISKWESGQSN-----PDISNVIKLSGIYNV 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|320535687|ref|ZP_08035776.1| peptidase S24-like domain protein [Treponema phagedenis F0421]
 gi|320147447|gb|EFW38974.1| peptidase S24-like domain protein [Treponema phagedenis F0421]
          Length = 300

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 62/271 (22%), Gaps = 81/271 (29%)

Query: 6   HKKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIE----------------- 47
            +K+   I  + E+  NL  +  A   G+   + +K +R                     
Sbjct: 5   QEKVGCRIKFIREKIFNLNQTKFADLLGITQATLSKYERGETSFPDELKFFLGEKGINSH 64

Query: 48  ---------------GRNRWPSTESIFKILAA---------------------------- 64
                             + P    I KI                               
Sbjct: 65  WLLTGEGEPCVKEETEPPKPPILAEIEKIAENAVAAKLGKHDEQFEALAERQQAIEQEQQ 124

Query: 65  -TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE- 122
              +   +++ L   +     +  ++  +     +G      +     G +  T  +P  
Sbjct: 125 KLRQEWEEIIQLYSPENMKKPENPRKSIIRTMGSTGEVHERLAYYGADGEEEETEDLPLA 184

Query: 123 ---------------IRSPHNGIYAIQTQDTRH-KTQDTSM-LPLYRKGDILILNSAIQV 165
                             P    +  +       K + TSM       G  ++L      
Sbjct: 185 ENLAAGFPIEAFDNYETYPVPKRFLKKRHKYCVAKIKGTSMTAAGIADGSHVLLEYCDSP 244

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
             G  +++K        K L         L+
Sbjct: 245 VNGSIMVVKYGEN-TTLKRLHQTDEGEWQLL 274


>gi|302380564|ref|ZP_07269029.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
 gi|303234052|ref|ZP_07320701.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
 gi|302311507|gb|EFK93523.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
 gi|302494977|gb|EFL54734.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
          Length = 179

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +  +  LT   LA ++ L     ++ +R         PS +S+  +L A   
Sbjct: 2  EIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLT-----SPSVDSLNYVLNALGT 56

Query: 68 TI 69
           +
Sbjct: 57 DM 58


>gi|254519819|ref|ZP_05131875.1| DNA-binding protein [Clostridium sp. 7_2_43FAA]
 gi|226913568|gb|EEH98769.1| DNA-binding protein [Clostridium sp. 7_2_43FAA]
          Length = 179

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E I R+     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2  EIGEKIRRLRIEKQLTQEELANRCELSKGFISQVENDLT-----SPSIATLIDILEILGT 56

Query: 68 TICQLL 73
           + +  
Sbjct: 57 NLTEFF 62


>gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseburia intestinalis L1-82]
 gi|257201706|gb|EEU99990.1| transcriptional regulator [Roseburia intestinalis L1-82]
          Length = 170

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/82 (9%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I  + +R  ++   LA        + +K +          P   +  ++  A    + 
Sbjct: 30  DNIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESI-----PDVIACDRMAEAFGVALE 84

Query: 71  QLLDLPFSDGRTTEKKEKEIPL 92
            +L     +       + +   
Sbjct: 85  DMLHYEEKNKSLPLPPKGKHMF 106


>gi|169824259|ref|YP_001691870.1| Cro/CI family transcriptional regulator [Finegoldia magna ATCC
          29328]
 gi|167831064|dbj|BAG07980.1| putative transcriptional regulator Cro/CI family [Finegoldia
          magna ATCC 29328]
          Length = 179

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +  +  LT   LA ++ L     ++ +R         PS +S+  +L A   
Sbjct: 2  EIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLT-----SPSVDSLNYVLNALGT 56

Query: 68 TI 69
           +
Sbjct: 57 DM 58


>gi|167769076|ref|ZP_02441129.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM
           17241]
 gi|167668716|gb|EDS12846.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM
           17241]
          Length = 184

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 47/170 (27%), Gaps = 21/170 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +        ++   LA + GL  +  ++ +R  +      PS  ++  I AA   
Sbjct: 5   DIGSVLQASRGEKKISLRQLAERTGLTASMLSQIERNLVN-----PSINTLKVIAAALEI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPL-----------LYFPPSGSGGFFDSGVFPTGNKWN 116
            + +      +D     +++  I L           L          F     P  N  +
Sbjct: 60  PMYKFFMGGGADKNLVVRRDARITLGRPEAEDIVYELLTANVSGSIEFCMMHIPAKNGSH 119

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            V    I       Y  Q +         +       GD +++       
Sbjct: 120 NVE--SIHKGEEVAYVAQGKI-TVYINGAAYE--LETGDSVLIPPGSVHR 164


>gi|89097350|ref|ZP_01170240.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89088173|gb|EAR67284.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 107

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I E + R+ +   ++ S LA +AG+  +  +  +R         PS + + KI A  +
Sbjct: 2  IGERVKRLRQERKMSLSELAEQAGVAKSYLSSLERNLQT----NPSIQFLEKISAVLH 55


>gi|158317409|ref|YP_001509917.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112814|gb|ABW15011.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
          Length = 490

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 4/91 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    + H LT   LA   G D +  +K +     GR       ++  I      +
Sbjct: 20  IGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVE----SGRRAIHDISTLRHIARNLGLS 75

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
              +   P        +  +   +     S 
Sbjct: 76  PEDVGLAPGGLADRRREPPRGSAVEKVAGSQ 106


>gi|298290822|ref|YP_003692761.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296927333|gb|ADH88142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 471

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +  +I   + R+     ++ + LA   G+  +  N  +        R  +   + K+   
Sbjct: 4  TEPRIGSRVQRLRRAKRVSQADLAVALGISASYLNLIEHN-----RRRITVPLLMKLAGY 58

Query: 65 TNETICQLLDLPF 77
                +L++   
Sbjct: 59 FGIEPGELVENDE 71


>gi|295107575|emb|CBL05118.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 143

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+ E I R+ +    T   LA   G+   S  K +        + P  + I + L     
Sbjct: 2  KVGEKIQRIRKERGYTADQLAEMLGISAVSLRKYEYGERT--PKDPMIDEIARCLEVNPS 59

Query: 68 TICQLL 73
          ++    
Sbjct: 60 SLKSDW 65


>gi|283836086|ref|ZP_06355827.1| hypothetical protein CIT292_10505 [Citrobacter youngae ATCC
          29220]
 gi|291068273|gb|EFE06382.1| toxin-antitoxin system, antitoxin component, Xre family
          [Citrobacter youngae ATCC 29220]
          Length = 99

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 5  SHKKIWE---------AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          S ++I E         A++ + E  NL+ + LA   G+   +  K ++   + R      
Sbjct: 15 SQERIAEKVEVLRQAVALNMLREELNLSQAELASAMGVKQPTIAKMEQADNDPRLSTLKR 74

Query: 56 ESIF 59
              
Sbjct: 75 YVAA 78


>gi|271966030|ref|YP_003340226.1| XRE family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270509205|gb|ACZ87483.1| putative transcriptional regulator, XRE family [Streptosporangium
           roseum DSM 43021]
          Length = 197

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 34/143 (23%), Gaps = 3/143 (2%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  +     +T + LA   G+  ++ ++ +               + +      
Sbjct: 6   DAVGPRLRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLEL--LLPLARTYDVPL 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           + +                    +  +       G      + P       V  P+    
Sbjct: 64  DDLVGAPRTGDPRIHLKPILRFGMTFVPLSRRPGGVQAFKMIIPA-QPEPLVPTPQTHDG 122

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP 149
              +Y +  +      +    LP
Sbjct: 123 FEWLYVLNGRLRLILGERDLTLP 145


>gi|227890248|ref|ZP_04008053.1| possible signal peptidase I [Lactobacillus johnsonii ATCC 33200]
 gi|227849062|gb|EEJ59148.1| possible signal peptidase I [Lactobacillus johnsonii ATCC 33200]
          Length = 216

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186
            + +             SM P +   D +I     ++  GD +++      G +  K +I
Sbjct: 31  FFVLNKYVFANLTVSGISMQPTFENNDRVIALRHAKIKEGDIVIVDAPDEPGALYIKRVI 90

Query: 187 SRRGRSID 194
              G +I 
Sbjct: 91  GLPGDTIV 98


>gi|206975059|ref|ZP_03235973.1| HTH-type transcriptional regulator xre (Putative PbsX repressor)
          [Bacillus cereus H3081.97]
 gi|217959610|ref|YP_002338162.1| putative DNA-binding protein [Bacillus cereus AH187]
 gi|229138835|ref|ZP_04267416.1| transcriptional regulator [Bacillus cereus BDRD-ST26]
 gi|206746480|gb|EDZ57873.1| HTH-type transcriptional regulator xre (Putative PbsX repressor)
          [Bacillus cereus H3081.97]
 gi|217065315|gb|ACJ79565.1| putative DNA-binding protein [Bacillus cereus AH187]
 gi|228644751|gb|EEL01002.1| transcriptional regulator [Bacillus cereus BDRD-ST26]
          Length = 117

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           F+H++    +  + ++  ++   LA   G+   S         +   R     ++ KI 
Sbjct: 1  MFNHER----LKSLIDKKGISQQQLADAIGVSHVSVYNYVEGKKKPGIR-----TLQKIA 51

Query: 63 AAT 65
             
Sbjct: 52 KHL 54


>gi|118445204|ref|YP_891173.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196047678|ref|ZP_03114883.1| transcriptional regulator [Bacillus cereus 03BB108]
 gi|118419765|gb|ABK88183.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196021503|gb|EDX60205.1| transcriptional regulator [Bacillus cereus 03BB108]
          Length = 116

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 8/111 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I  + +   +T   L    G+   + +  ++       + P  ES+ KI      T
Sbjct: 2   IGEKIKELRKNSKMTQEQLGDAIGVSKMAISYFEKG-----KKSPGRESLEKIADYFGVT 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
              LL          E+ +          +      +         W  + 
Sbjct: 57  TDYLLGRSEDPELNEEEDKTVSEEGKNILAIIESLPEDERKKA---WEQLE 104


>gi|121610046|ref|YP_997853.1| XRE family transcriptional regulator [Verminephrobacter eiseniae
          EF01-2]
 gi|121554686|gb|ABM58835.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae
          EF01-2]
          Length = 87

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+ S   I E +        L+   LA++AG+  T+  + +           S  ++ +
Sbjct: 1  MTTLS--DIAEMLKGARRDARLSQDELAQRAGVSRTTVARMENLSKG----DMSVSALVR 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +L A+   +  +             ++++  L 
Sbjct: 55 LLEASGYDLKLVKPGHVRTVEDILAEQRQGDLP 87


>gi|23098993|ref|NP_692459.1| signal peptidase I [Oceanobacillus iheyensis HTE831]
 gi|22777221|dbj|BAC13494.1| signal peptidase I [Oceanobacillus iheyensis HTE831]
          Length = 193

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 116 NTVGVP-EIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAI----QVNCGD 169
             +     +       + ++         +  SM P     D +I+N       +    D
Sbjct: 12  EWLDWIKALLVAFGLAFLVRMFLFAPIIVEGPSMFPTLHDRDQMIVNKLSYTIGEPERFD 71

Query: 170 RLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
            ++    T     K +I+  G  + +   N  Y    +   ++E
Sbjct: 72  IVVFHAPTQKDFIKRIIALPGEHVAVE-DNKLY----INGEEVE 110


>gi|253699444|ref|YP_003020633.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251774294|gb|ACT16875.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 106

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          + + +   I  + +   L+   LA   G++P   ++ +         +PS + + +I  A
Sbjct: 4  TKELLGARIKELRKGRKLSQEELAELIGIEPRHMSRIEVGKS-----YPSLDRLERIAMA 58

Query: 65 TNETICQLLDLPFSDGRT 82
           N  +    D    + R 
Sbjct: 59 LNVDLRDFFDFAHLEARP 76


>gi|168207181|ref|ZP_02633186.1| helix-turn-helix domain protein [Clostridium perfringens E str.
          JGS1987]
 gi|170661419|gb|EDT14102.1| helix-turn-helix domain protein [Clostridium perfringens E str.
          JGS1987]
          Length = 145

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I  + +    T   LA++AGL  ++ ++       G+ + P+ +++ K+  A   T+ 
Sbjct: 5  EIIQNLMDSKGWTKYRLAKEAGLGQSTVHEIM----SGKKKSPNAKTLQKLATALGVTVD 60

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97
             +   S   +   KE++  L     
Sbjct: 61 TFFNDDSSPNESKANKERDYSLTIKEQ 87


>gi|167462393|ref|ZP_02327482.1| transcriptional regulator, XRE family protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 227

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 41/171 (23%), Gaps = 5/171 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIF 59
           M +   K++   I ++ E   LT   LA    + +  + +  +              ++ 
Sbjct: 1   MNNLEKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRST--PPSDVLRNLA 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTV 118
            I   + + +              + +   +  + +         D      G       
Sbjct: 59  DIFNVSADYLLGRGGNDEFVTPPEDNQGGAVSEIGWAIKLERQSQDMTQKELGKQVGENQ 118

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                           T D   +    S  P +     +   S      GD
Sbjct: 119 RQISSYELDLKPVPEHTLDKIMEVFGLSF-PEFLAKYNMWDESIHPHFDGD 168


>gi|154505562|ref|ZP_02042300.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC
          29149]
 gi|153794220|gb|EDN76640.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC
          29149]
          Length = 107

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 5/78 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +    +L+   LA + G+  ++ +  ++       R P  + + KI          L
Sbjct: 8  LKTLRTDKHLSQQELATRLGISKSAVSMYEQG-----RREPDFDILNKIADIFQVDADYL 62

Query: 73 LDLPFSDGRTTEKKEKEI 90
          L                 
Sbjct: 63 LGRSSLSHEPEPVTIAAH 80


>gi|153852685|ref|ZP_01994122.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814]
 gi|149754327|gb|EDM64258.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814]
          Length = 83

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H  +   +     R  +  + + + AG+   + ++ +R         PS     K+    
Sbjct: 8  HLPLLNRLKEYRSRLGVNQTEMGKLAGVSRQTISQIERGDY-----SPSVTLALKLAKIC 62

Query: 66 NETICQLLDLPFSDGRTTEKK 86
             +  +           ++K
Sbjct: 63 EVNVEDIFIYEEEINDEGKEK 83


>gi|332285621|ref|YP_004417532.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp.
           T7-7]
 gi|330429574|gb|AEC20908.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp.
           T7-7]
          Length = 187

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 17/171 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   +  +  ++  +   L+++ GL  +  +K +R   E     PS  ++ K+  A   
Sbjct: 3   EISFRLKALRRQYQFSLEQLSQRTGLTKSYLSKLERGVSE-----PSISTVLKLAQAYEI 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG------NKWNTVGVP 121
            + QL+              +          G            G           V  P
Sbjct: 58  GVSQLIGTGEGGESEAISVVRRNEREPLDRQGQARTGYRYEAMAGKRLVKAMDPFIVYPP 117

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSM------LPLYRKGDILILNSAIQVN 166
                 +  +  + ++     + T +            GD +  +S +   
Sbjct: 118 RAGEAASSSFPHEGEEFMLVLKGTVLITVGGQEHRLSAGDSIYFDSELPHK 168


>gi|331092326|ref|ZP_08341153.1| hypothetical protein HMPREF9477_01796 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401559|gb|EGG81142.1| hypothetical protein HMPREF9477_01796 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 102

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                I E I R+   +NL+   LAR       + ++ +          P  E + K+ 
Sbjct: 1  MEEQTNIGEKIKRIRRENNLSQEDLARSLHTSRQTVSRWETNRSV-----PDLEMLEKVA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
                +  LLD+   +    +++  +  L 
Sbjct: 56 FIFEMEVKDLLDVKMVNKNQEKQETLDSYLP 86


>gi|325568823|ref|ZP_08145116.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus
           ATCC 12755]
 gi|325157861|gb|EGC70017.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus
           ATCC 12755]
          Length = 182

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M      +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F 
Sbjct: 1   MNM----EIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLS-----SPSMETFFT 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           IL     T  +      +  +   ++E             
Sbjct: 52  ILEVLGVTPEEFFREENAQHQVVYREEDSTLYYDEENGYE 91


>gi|262281939|ref|ZP_06059708.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|262262393|gb|EEY81090.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 210

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+ + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  KLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  E   +
Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIEHRRI 82


>gi|257877436|ref|ZP_05657089.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus
           EC20]
 gi|257811602|gb|EEV40422.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus
           EC20]
          Length = 201

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M      +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F 
Sbjct: 20  MNM----EIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLS-----SPSMETFFT 70

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           IL     T  +      +  +   ++E             
Sbjct: 71  ILEVLGVTPEEFFREENAQHQVVYREEDSTLYYDEENGYE 110


>gi|259909785|ref|YP_002650141.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96]
 gi|224965407|emb|CAX56939.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96]
 gi|283479880|emb|CAY75796.1| putative HTH-type transcriptional regulatory protein PF1851
          [Erwinia pyrifoliae DSM 12163]
          Length = 133

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + E + R+ +   +T S LA K  +   +    +      R +  S   + +I +  
Sbjct: 26 LGERMTRLRKEQGITQSELADKLNVSQQTVQAWEAGRR--RIKVSSLPFVAQIFSVP 80


>gi|170747509|ref|YP_001753769.1| XRE family transcriptional regulator [Methylobacterium
          radiotolerans JCM 2831]
 gi|170654031|gb|ACB23086.1| transcriptional regulator, XRE family [Methylobacterium
          radiotolerans JCM 2831]
          Length = 186

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  +  RH L+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DVGARLRFVRARHGLSQRTLAKRAGVTNSAISLIE-----ANRVNPSVGALKRILDGVPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|117924636|ref|YP_865253.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117925852|ref|YP_866469.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117926017|ref|YP_866634.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608392|gb|ABK43847.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
 gi|117609608|gb|ABK45063.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
 gi|117609773|gb|ABK45228.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
          Length = 104

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 18/81 (22%)

Query: 4  FSHKKIW----EAIDRM-------------AERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           +H ++     EA D +              +   LT   +A++ G   ++ ++ +    
Sbjct: 16 LTHARLKPGFSEAYDALEDEFQALRTFLSARKEAGLTQEEIAKRMGTTKSAVSRLESSLG 75

Query: 47 EGRNRWPSTESIFKILAATNE 67
          +     PS  ++ K   A   
Sbjct: 76 D-HKHSPSIATLRKYAKAVGC 95


>gi|326388765|ref|ZP_08210354.1| XRE family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206789|gb|EGD57617.1| XRE family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 190

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 7/133 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I  AI    +R  +T   LA  +GL     ++ +R         PS  S+  I AA    
Sbjct: 16  IGAAIRDRRKRLGMTLQALATASGLSAPFLSQVERDLA-----MPSLVSLTAIAAALGVE 70

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   +  P          + E+  +  P   +                 + VP   +   
Sbjct: 71  MSYFVGTPPPGQVVRRGNQPELLQIGAPAVYARLSGRHEERKMEAL--HITVPPGLASPL 128

Query: 129 GIYAIQTQDTRHK 141
                +      +
Sbjct: 129 ARREGEGFWYVLE 141


>gi|227890195|ref|ZP_04008000.1| cI repressor [Lactobacillus johnsonii ATCC 33200]
 gi|227849290|gb|EEJ59376.1| cI repressor [Lactobacillus johnsonii ATCC 33200]
          Length = 122

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 22/45 (48%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            ++ +I   +D + +  N++ + LAR  GL  +S ++      +
Sbjct: 1  MRNNDEIVAYVDNLRKSQNMSLNELARATGLAKSSLSRYFNKTRD 45


>gi|227873617|ref|ZP_03991855.1| transcriptional regulator [Oribacterium sinus F0268]
 gi|227840535|gb|EEJ50927.1| transcriptional regulator [Oribacterium sinus F0268]
          Length = 158

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I ++     LT    A + G+   S ++ +           ST+ I +I  A   +
Sbjct: 2  IGENIRKLRHTQGLTQPEFAERIGVSRNSLSRYENGSSP-----ISTDIIDRICQAFQVS 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
            +++          E +      L+   +
Sbjct: 57 YREIVGEEKMINPLEEYQLSSKIDLFKERA 86


>gi|284029088|ref|YP_003379019.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283808381|gb|ADB30220.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836]
          Length = 195

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  +I   + RM E+ ++T + L+R  G+  ++ ++ +        R PS E +  I AA
Sbjct: 10  TISQIAPRLRRMREKKSVTLAELSRTTGISTSTLSRLESGQ-----RKPSLELLLPIAAA 64

Query: 65  TNETICQLLDLPFSDGRT-TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               +  ++  P        +   +    L+   S   G   +         +    P +
Sbjct: 65  LAVPLDDIVAAPRVVDPRVPQNAGRSNGRLFVSLSRDQGEPKAFKLTIPA-SDNEPSPRV 123

Query: 124 RSPHNGIYAIQTQDTRH 140
            + H  +Y +  +    
Sbjct: 124 HAGHEWLYVLTGRLRLV 140


>gi|229821739|ref|YP_002883265.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229567652|gb|ACQ81503.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM
          12333]
          Length = 513

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I   I    +   LT + LA + G   ++  + ++          S E + +I  A  
Sbjct: 13 EIGALIRGARQNKGLTQAQLAERLGTSQSAIARIEQGSQN-----LSVELLTRINRALE 66


>gi|325697585|gb|EGD39470.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK160]
          Length = 205

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKARGISQEGLAEQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82


>gi|322391296|ref|ZP_08064766.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
 gi|321145722|gb|EFX41113.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
          Length = 150

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E + ++ + H LT   LA   G+   S++  +    E     P+ E++ K+    N T
Sbjct: 4  LGENLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTE-----PTLENVVKLANIFNTT 58

Query: 69 ICQL 72
              
Sbjct: 59 TDYF 62


>gi|317502031|ref|ZP_07960214.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316896573|gb|EFV18661.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 293

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I    ++  L+   +A K G+   +  K +          P   ++  I      ++ 
Sbjct: 5  EQIKYYRKQAGLSQEKMAEKIGVSRQAITKWENGTGT-----PDIANLMAIANLFQISVD 59

Query: 71 Q 71
          +
Sbjct: 60 E 60


>gi|313893962|ref|ZP_07827528.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
 gi|313441526|gb|EFR59952.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
          Length = 91

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I +  E   LT   LA K+G+  ++  + ++          S  ++ KI  A 
Sbjct: 36 IAKAREAAGLTQRDLAEKSGVPQSTIARIEQGANT------SISTLCKIAFAL 82


>gi|312126619|ref|YP_003991493.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776638|gb|ADQ06124.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 118

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    +KKI E +  + ++   T   +A+  G+     +  +        R  S  ++  
Sbjct: 1  MKEEVYKKIGEKLRELRKQRGFTQEQVAKYLGITQEQLSYYETGA-----REISVATLQA 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
          +          LL              +   +
Sbjct: 56 LARLYGCDYNYLLSDDEQLNTQVAINFRADEI 87


>gi|310640785|ref|YP_003945543.1| transcriptional regulator, xre family [Paenibacillus polymyxa
          SC2]
 gi|309245735|gb|ADO55302.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa
          SC2]
          Length = 124

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I++ I+ + +   +T     ++ G+   +F   KR         P T  + +I +  N
Sbjct: 2  QSIYQRIEELIKERGMTKKAFCQQLGISTGNFGDWKRGKTT-----PGTNKLIEIASFFN 56

Query: 67 ETICQLL 73
           ++  ++
Sbjct: 57 ASLDWIM 63


>gi|238061301|ref|ZP_04606010.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
 gi|237883112|gb|EEP71940.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
          Length = 481

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I  +     ++   LA +AG+     ++ +R       R PS E + ++ +A   
Sbjct: 9  DVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERG-----LRKPSAEVLQQLASALRV 63

Query: 68 TICQLL 73
          +   + 
Sbjct: 64 STPAMY 69


>gi|224543830|ref|ZP_03684369.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM
          15897]
 gi|224523249|gb|EEF92354.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM
          15897]
          Length = 217

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 5/72 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I        LT   +A   G+   + +  +         +P   S+ K+    + 
Sbjct: 4  DIGSKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 58

Query: 68 TICQLLDLPFSD 79
          ++  LL      
Sbjct: 59 SLDYLLKGEEKM 70


>gi|222100228|ref|YP_002534796.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359]
 gi|221572618|gb|ACM23430.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359]
          Length = 113

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I   +    + HNLT   LA+K G+  +  +K +        R      + KI+AA  
Sbjct: 37 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIR-----VLAKIVAALG 90


>gi|183980823|ref|YP_001849114.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183174149|gb|ACC39259.1| transcriptional regulatory protein [Mycobacterium marinum M]
          Length = 138

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E  +++   LA ++G+     ++ +R       R PS + + +I  A   
Sbjct: 20  DIGSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLAQIAKALRV 74

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +   L         +   + +++ +    
Sbjct: 75  SAEVLYVRAGILEPSETSQVRDVIITDTA 103


>gi|170289284|ref|YP_001739522.1| XRE family transcriptional regulator [Thermotoga sp. RQ2]
 gi|170176787|gb|ACB09839.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2]
          Length = 110

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I   +    + HNLT   LA+K G+  +  +K +        R      + KI+AA  
Sbjct: 34 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIR-----VLAKIVAALG 87


>gi|148270580|ref|YP_001245040.1| helix-turn-helix domain-containing protein [Thermotoga petrophila
          RKU-1]
 gi|281412888|ref|YP_003346967.1| XRE family transcriptional regulator [Thermotoga naphthophila
          RKU-10]
 gi|147736124|gb|ABQ47464.1| helix-turn-helix domain protein [Thermotoga petrophila RKU-1]
 gi|281373991|gb|ADA67553.1| transcriptional regulator, XRE family [Thermotoga naphthophila
          RKU-10]
          Length = 127

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I   +    + HNLT   LA+K G+  +  +K +        R      + KI+AA  
Sbjct: 34 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIR-----VLAKIVAALG 87


>gi|15644083|ref|NP_229132.1| LacI family transcriptional regulator [Thermotoga maritima MSB8]
 gi|4981889|gb|AAD36402.1|AE001787_7 lacI family transcriptional regulator, putative [Thermotoga
          maritima MSB8]
          Length = 111

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I   +    + HNLT   LA+K G+  +  +K +        R      + KI+AA  
Sbjct: 18 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIR-----VLAKIVAALG 71


>gi|86136390|ref|ZP_01054969.1| DNA binding protein, putative [Roseobacter sp. MED193]
 gi|85827264|gb|EAQ47460.1| DNA binding protein, putative [Roseobacter sp. MED193]
          Length = 287

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 4/119 (3%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
                ++    + R      L+ S LAR  G+D ++ ++      +   R P+   +   
Sbjct: 7   KRLRAEQFRTRLIRALNDSGLSQSALARGTGVDRSTISQLLN---DDGARLPNAHVVGAC 63

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119
            +    +   LL L        E     + L   P +              G K   V 
Sbjct: 64  ASVLGVSADWLLSLSDRPESAAELMAASLSLSKAPRALVDQRIFDWHREAAGYKIRHVP 122


>gi|94313037|ref|YP_586246.1| XRE family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356889|gb|ABF10977.1| transcriptional regulator, Xre/Cro/CI family [Cupriavidus
           metallidurans CH34]
          Length = 212

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 10/143 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E +  + + + LT   LA++A L  +  +K +R         P+  ++ K+  A   T
Sbjct: 30  IAERLAELRKLNGLTLEELAQRASLTKSYLSKLERGLS-----SPTIGTVLKLADALGVT 84

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV----PEIR 124
           + QL+            +     + + P +   G+    +                P   
Sbjct: 85  VDQLITRSSRANEILHIRAA-DRIPFSPSTERLGYTYEAIATERPDKAMQPFIMVPPFTL 143

Query: 125 SPHNGIYAIQTQDTRHKTQDTSM 147
                + +   ++          
Sbjct: 144 EEDQPMASHAGEELIFVVSGEME 166


>gi|324992103|gb|EGC24025.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK405]
 gi|324994197|gb|EGC26111.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK678]
 gi|327472822|gb|EGF18249.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK408]
          Length = 205

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGMEPVVQKEEEQSIKHRRI 82


>gi|322372600|ref|ZP_08047136.1| putative transcriptional regulator [Streptococcus sp. C150]
 gi|321277642|gb|EFX54711.1| putative transcriptional regulator [Streptococcus sp. C150]
          Length = 159

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  + +   LT   LA   G+   S ++ +           STE + +I    N +
Sbjct: 3  IGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTS-----AISTELLDRICQTLNVS 57

Query: 69 ICQ 71
             
Sbjct: 58 YVD 60


>gi|318605629|emb|CBY27127.1| transcriptional regulator yidN, Cro/CI family [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 188

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/145 (8%), Positives = 36/145 (24%), Gaps = 6/145 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   I   +  +      + S  A + G+      + +R         P+  +++K
Sbjct: 1   MKELTR-HIGNQLKNVRRERGWSLSQTAEQTGVSKAMLGQIERGES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I +  N +  Q L+ P +      +                                + +
Sbjct: 55  IASGLNVSFSQFLETPPAQSAALHRHGLLTTFNSETSGMRVVPLFPYDATLRMDMFVIDL 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145
                  +  +     +     +  
Sbjct: 115 DPGGCSESTPHEAGVIEHVIVIEGE 139


>gi|257440174|ref|ZP_05615929.1| toxin-antitoxin system, antitoxin component, Xre family
           [Faecalibacterium prausnitzii A2-165]
 gi|257197526|gb|EEU95810.1| toxin-antitoxin system, antitoxin component, Xre family
           [Faecalibacterium prausnitzii A2-165]
          Length = 220

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 5/126 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + RM +   LT + LA++  +   + ++ +R    G     + E +   L  T   +
Sbjct: 7   GAFLARMRKSQGLTQAELAQQLHVTDKAVSRWERGV--GLPDINTLEPLADALGLTLADL 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF---PTGNKWNTVGVPEIRSP 126
               D   +D       E    LL    S       + +F        W  +  P   + 
Sbjct: 65  MHCRDPQEADIAPEVPLEDFFTLLRRQQSIDWRSVRAVLFWLSAALAIWGILACPGRMAV 124

Query: 127 HNGIYA 132
           H    +
Sbjct: 125 HWRTLS 130


>gi|258654157|ref|YP_003203313.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258557382|gb|ACV80324.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 187

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +        L+  GLA+ AG+   S ++ +        R P+  +++ +  A    
Sbjct: 10 IGERLRAARTEQGLSVGGLAQAAGIGKGSLSEIENGT-----RNPTLSTLYGLANALGRP 64

Query: 69 ICQ 71
          +  
Sbjct: 65 LSW 67


>gi|261363946|ref|ZP_05976829.1| toxin-antitoxin system, antitoxin component, Xre family
          [Neisseria mucosa ATCC 25996]
 gi|296314023|ref|ZP_06863964.1| toxin-antitoxin system, antitoxin component, Xre family
          [Neisseria polysaccharea ATCC 43768]
 gi|288567969|gb|EFC89529.1| toxin-antitoxin system, antitoxin component, Xre family
          [Neisseria mucosa ATCC 25996]
 gi|296839393|gb|EFH23331.1| toxin-antitoxin system, antitoxin component, Xre family
          [Neisseria polysaccharea ATCC 43768]
          Length = 120

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S K + E + ++   +  +   L+   G+   S    +        R P+ + + +   
Sbjct: 7  LSSKLLGERLKKIRTDNGYSREQLSELFGISRASIQNYENGE-----RSPNADYLVQFYK 61

Query: 64 ATNETICQ 71
               +  
Sbjct: 62 HFGINLHW 69


>gi|125717272|ref|YP_001034405.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK36]
 gi|125497189|gb|ABN43855.1| Transcriptional regulator, XRE family, putative [Streptococcus
          sanguinis SK36]
          Length = 205

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGMEPVVQKEEEQSIKHRRI 82


>gi|172058586|ref|YP_001815046.1| XRE family transcriptional regulator [Exiguobacterium sibiricum
          255-15]
 gi|171991107|gb|ACB62029.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum
          255-15]
          Length = 139

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I ++ ++H  T   LA + G   TS +  +R       R P+T+++ ++  A N T
Sbjct: 5  LGKKIMQLRKQHQYTQKHLAERCGETVTSISAYERGQ-----RMPNTQTLERLALALNTT 59

Query: 69 ICQLLDLPFSDGR 81
          +  L+D  +    
Sbjct: 60 VIDLIDPQYVQHP 72


>gi|322831120|ref|YP_004211147.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
 gi|321166321|gb|ADW72020.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
          Length = 90

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H  I   +  + E   L+ + LAR+ G+ P +  + ++     R    S  ++ +   A
Sbjct: 28 TH--IHALLQTLREDAGLSKTELARRLGITPPAITRLEK-----RPAQASFCTLSRYAQA 80

Query: 65 TNETICQLL 73
              +    
Sbjct: 81 CGFHLYLYY 89


>gi|311899387|dbj|BAJ31795.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 188

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 20/165 (12%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  +  ++ L+   LA + G+  +  +K +R   E     PS  +  KI  A    + +
Sbjct: 4   RLRALRTQNRLSLEALAAQVGVTKSYLSKVERGLSE-----PSISTALKIAEALGVEVGR 58

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIRSPHN 128
           L          T  +  E   L  P     G    G+         V     P +  P  
Sbjct: 59  LFSEEVEPELVTVVRAGERTPLGGPE----GSRYEGIAAALPGKRMVPFVMYPPLDGPVE 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
              + + ++     Q  + L           +  +++  GD +  
Sbjct: 115 AFKSHRGEEFLFVHQGRAELEFP--------DRTVRLGPGDSVYF 151


>gi|302531776|ref|ZP_07284118.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4]
 gi|302440671|gb|EFL12487.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4]
          Length = 505

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + +  E   ++   LA ++G+  +  ++ +        R      +     A   
Sbjct: 113 EIGARLRQAREARGISQQALADESGISQSFLSRLESGARLLTGRGL----LETFAEALGC 168

Query: 68  TICQLLDLPFS 78
           ++ +L   P  
Sbjct: 169 SVAELTGRPDP 179


>gi|229145898|ref|ZP_04274277.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24]
 gi|296503830|ref|YP_003665530.1| transcriptional repressor [Bacillus thuringiensis BMB171]
 gi|228637506|gb|EEK93957.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24]
 gi|296324882|gb|ADH07810.1| transcriptional repressor [Bacillus thuringiensis BMB171]
          Length = 374

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/206 (9%), Positives = 56/206 (27%), Gaps = 14/206 (6%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             N +I +L+       +   K         F                   ++   +   
Sbjct: 56  YFNISIDELISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECRGIIKKYYSCFPL--- 112

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                 I  +              +    +  + + +   + +    L+ +  +      
Sbjct: 113 ---LIQIGILFINHHMLTEDTDRGI-EILEEAMNLFSRVQEESDDVSLVKEAASFQATCY 168

Query: 184 VLISRRGRSIDLMSLN--CCYPVDTV 207
           ++++R    + L+       +P + +
Sbjct: 169 LILNRPNEVLQLLGETIRPNFPEEDL 194


>gi|254475536|ref|ZP_05088922.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
 gi|214029779|gb|EEB70614.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
          Length = 131

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +    E   +T + LAR+ G+  T+    ++   E   R      +  +L  +   
Sbjct: 17 GDRVAAAREAAGMTQAQLARRLGVKKTTLTGWEQDLSE--PRANKLTMMAGLLNVSMGW 73


>gi|182434296|ref|YP_001822015.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326774809|ref|ZP_08234074.1| helix-turn-helix domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178462812|dbj|BAG17332.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326655142|gb|EGE39988.1| helix-turn-helix domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 199

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 38/133 (28%), Gaps = 6/133 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+ +   +T + L+   G+  ++ ++ +  G     R PS E +  I  A    
Sbjct: 18  VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGG-----RRPSLELMLPIARAHEVP 72

Query: 69  ICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  L+                +      P +   G   +                    +
Sbjct: 73  LDDLVGAAPVGDPRVRAKPIVQHGRTMLPLTARPGGLQAYKLIQEPGSGGPPEQRTHEGY 132

Query: 128 NGIYAIQTQDTRH 140
             ++ +  +    
Sbjct: 133 EWLFVLSGKLRLL 145


>gi|167746155|ref|ZP_02418282.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662]
 gi|167654670|gb|EDR98799.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662]
          Length = 180

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 9/175 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I R+ E+  L+   L++ +G+  +   + +R         P+  +++KI       
Sbjct: 5   VAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGN-----PTISTLWKISNGMKVP 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L   P +     +  + E  L       +   F          +  + +       +
Sbjct: 60  FDALTVRPKTPYEIIKTADIEPLLEDSGRVKNYPLFPDDADRKFAVY-YLKLEPYSRWES 118

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIVA 182
             +   T +          +          L     +   GD       TG+   
Sbjct: 119 EAHLKGTTEFITVFHGDLEI--CADCHKFTLTKDESIRFPGDTAHSYRNTGNDTV 171


>gi|326330368|ref|ZP_08196678.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium
           Broad-1]
 gi|325951905|gb|EGD43935.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium
           Broad-1]
          Length = 248

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 12/153 (7%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +        L+ + LA +AG    + +  +R       + P+ +   +IL AT       
Sbjct: 32  LQAARRVAGLSQAELAEQAGTSQATLSAYERGA-----KSPALKVAERILHATGLE---- 82

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
             L        +++       ++ PS          F   +  + V              
Sbjct: 83  --LSVRAHVDFKERSVPGIEPFWVPSMLWNVGPPTCFVILHVPDMVNHTSQIDWDLSDRV 140

Query: 133 IQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQ 164
            + +      +      + R  D  L+++   +
Sbjct: 141 DRARAYEILIRWGLPQAMLRWLDGALLVDLWDE 173


>gi|319788682|ref|YP_004148157.1| XRE family transcriptional regulator [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317467194|gb|ADV28926.1| transcriptional regulator, XRE family [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 65

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  + + H  +   LA +  +   + N  +    +     PS    F+I      +I  +
Sbjct: 5  LRALRDEHGWSQGELAERLEVSRQTVNALETGKYD-----PSLPLAFRIARLFGRSIEDV 59

Query: 73 LDLPFS 78
                
Sbjct: 60 FVPDEP 65


>gi|317056543|ref|YP_004105010.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315448812|gb|ADU22376.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 63

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + +   LT   LA   G+   + N  +          P+ E   K+       + 
Sbjct: 3  NRIKELRKSQKLTQDELANAVGVSRQTINAIENDKYN-----PTLELAIKLARYLRIPVE 57

Query: 71 Q 71
           
Sbjct: 58 D 58


>gi|296104296|ref|YP_003614442.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058755|gb|ADF63493.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 190

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 49/184 (26%), Gaps = 16/184 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++  I   + ++    NL+ + LA+ +G+   + +  +  G     R  + +SI   L
Sbjct: 11  KRTYTNIGNNVKKLRIARNLSLNELAKLSGVSKATLSTLESGGSN--PRVDTLDSIASAL 68

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T   +    +  +         + +   +     G G   +            +  P 
Sbjct: 69  RLTLGDLLGNNNERYPYIEKNSDYKGDYSQVMKFRIGQGNITEIWHLQMKPGV-VINSPA 127

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDR---LLIKPRTG 178
             S  +    +       K             + +IL         GD     +      
Sbjct: 128 HVSGTHEHIIVHLGTLLLK---------ISDSESIILQPGDFYAFSGDVKHAYICADDAV 178

Query: 179 DIVA 182
               
Sbjct: 179 SATV 182


>gi|228907545|ref|ZP_04071402.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL
           200]
 gi|228852037|gb|EEM96834.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL
           200]
          Length = 146

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + ++ E    +   +A+K G+   +  K +         +P  +++  +    N T
Sbjct: 3   IGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNVT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           + +L+    +        E++         G    F   +      + 
Sbjct: 58  LDELIKGKQNIKEKIHIDEEDEDFEKENEFGFYIGFGLLILSAFVDYE 105


>gi|172061648|ref|YP_001809300.1| XRE family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994165|gb|ACB65084.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MC40-6]
          Length = 227

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 6/172 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + KI AA   +
Sbjct: 35  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+   ++      S         P   +++ + +  + +   
Sbjct: 90  VAAFLRRHAVNGFEHLAAERAARVVSSSGRFSARALYPEGEPAAAEFHELRIAPLHTEPG 149

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              A           + ++         L+      V   D+       GD 
Sbjct: 150 TRRA-PGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGDT 200


>gi|110678190|ref|YP_681197.1| transcription regulator, putative [Roseobacter denitrificans OCh
          114]
 gi|109454306|gb|ABG30511.1| transcription regulator, putative [Roseobacter denitrificans OCh
          114]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +++ ++   LA  +G+     +  +          PS  S+ KIL   + 
Sbjct: 5  DVGARLKAIRQQNGMSQRQLAEASGVPHGQISMIETNKS-----SPSVASLRKILGGLSL 59

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
           + +  +    +         E+  L
Sbjct: 60 GMSEFFEPDVVEDDKPFYTPSELRDL 85


>gi|83720248|ref|YP_441361.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83654073|gb|ABC38136.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 224

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 13/162 (8%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + ++   T   LA  AGL  +  +K +R         PS     K+  A    + Q
Sbjct: 43  RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSV-----PSIAVALKLSKALQVDVEQ 97

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L          T  +  +   +    S       +           V  P  R   +  +
Sbjct: 98  LFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPP-RDYVSSAF 156

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                +        S+   +           I++  GD +  
Sbjct: 157 REHEGEEMLFVHKGSVEIEFPNE-------TIKLKTGDSVYF 191


>gi|332158049|ref|YP_004423328.1| hypothetical protein PNA2_0406 [Pyrococcus sp. NA2]
 gi|331033512|gb|AEC51324.1| hypothetical protein PNA2_0406 [Pyrococcus sp. NA2]
          Length = 316

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/189 (8%), Positives = 49/189 (25%), Gaps = 14/189 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI------EGRNRWPSTESIFKILA 63
              +  + E H  T + LAR  G+   S  + ++           R      E + K + 
Sbjct: 128 GRKLKMLREEHGYTLAELARILGISRKSLQRYEKGESVVSVEVALRLEEIFDEPLVKPID 187

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                +  +      +     +    +  L            + +       + + +   
Sbjct: 188 VLKARLEDVSLTSEPESALEREVFDRLRKLGMSVVKIKNAPFNAITKEE--EDEIELLTG 245

Query: 124 RSPHNGIYAIQTQ---DTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                    ++         +   +  + + +      +  ++ +   D L       ++
Sbjct: 246 IDERKTGKTLRRAELVSQMVEVIGSEGIFVLK-KAKAGVIKSVPILPKDMLEEVRDVDEL 304

Query: 181 V--AKVLIS 187
           +   K L  
Sbjct: 305 LEIIKELKK 313


>gi|322372760|ref|ZP_08047296.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. C150]
 gi|321277802|gb|EFX54871.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. C150]
          Length = 113

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 7/113 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I +      LT   +A K G+    + + +  G     R P  +++ K+    N +
Sbjct: 2   LKDNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGG-----RNPKDDTVEKLAEILNTS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +     DG            L                   + ++ +  P
Sbjct: 57  F--EILKGRDDGLEEIVSLLREHELTEEDKNQIISLLQDFLINNSMYDELPTP 107


>gi|322382840|ref|ZP_08056680.1| hypothetical protein PL1_3343 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153186|gb|EFX45636.1| hypothetical protein PL1_3343 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 244

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 11/111 (9%)

Query: 109 FPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN- 166
                    +  P          + +  D   + +D SM        DI+ L        
Sbjct: 130 IANEAIEEYIHYP--------FLSRKQPDFALRIKDNSMSKAGIEIDDIVFLRKTKWAEY 181

Query: 167 CGDRLLIKPRTGDIVAKVLISRRGR-SIDLMSLNCCYPVDTVEMSDIEWIA 216
            G  + +     D + K +    G   I L+S N       V  ++I    
Sbjct: 182 NGQIVGVIINGQDGMLKRMKWTEGSPKIQLVSGNDSINPLEVFPNEIIMCG 232


>gi|268320250|ref|YP_003293906.1| hypothetical protein FI9785_1788 [Lactobacillus johnsonii FI9785]
 gi|262398625|emb|CAX67639.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
          johnsonii FI9785]
          Length = 161

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I R+ + +NLT   +A+K  +   + +  +          P  E I  I      ++ 
Sbjct: 5  EQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRN-----LPDFEMIILIAKTFGVSLD 59

Query: 71 QLLDLPFSDGRTTEK 85
          +L+       +  + 
Sbjct: 60 ELILGDKKMNKIEQT 74


>gi|262200767|ref|YP_003271975.1| XRE family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262084114|gb|ACY20082.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 182

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  +    +++ S LAR AG+   S ++ +        R P+ ++++ +       
Sbjct: 16  IGARITELRTARSMSLSALARAAGIGKGSLSELESGQ-----RNPTIDTLYAVAGPLGVP 70

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +  LL        +       +  +   P G+           G+   
Sbjct: 71  LSALLGEESGTEGSGRSLSARLLHVEHHPDGAVTEVFWLTVTPGDVRE 118


>gi|319426969|gb|ADV55043.1| helix-turn-helix domain protein [Shewanella putrefaciens 200]
          Length = 108

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++I  ++     R   +   L+ ++G+  +  +K +   ++   R  S  ++ ++L 
Sbjct: 6  EQILGSLRDARIRKGFSQRELSARSGVPQSHISKIESGDVD--LRMSSLIALARVLD 60


>gi|160879054|ref|YP_001558022.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160427720|gb|ABX41283.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 179

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I  +  + +LT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2  KIGAKIKELRVQKSLTQEELADRAELSKGFISQLERDIT-----SPSIATLVDILQCLGT 56

Query: 68 T 68
           
Sbjct: 57 N 57


>gi|46402134|ref|YP_006628.1| Gp48 [Klebsiella phage phiKO2]
 gi|40218278|gb|AAR83064.1| Gp48 [Klebsiella phage phiKO2]
          Length = 95

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E +  M E+  L+ S LA + G+ P++ ++ +     G     S +++ K   A   +
Sbjct: 34 LVEMLYEMREKAGLSKSALAERMGITPSAISRLE-----GNPLGASMKTLNKYAQACGAS 88


>gi|310657705|ref|YP_003935426.1| DNA-binding protein [Clostridium sticklandii DSM 519]
 gi|308824483|emb|CBH20521.1| DNA-binding protein [Clostridium sticklandii]
          Length = 183

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 49/158 (31%), Gaps = 10/158 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S  +I + I  + +    T   LA K  L  +  ++ +           +  S+ K
Sbjct: 1   MEILS--EIADKIKELRKEKGYTLKDLADKTELSVSFLSQVENGSS-----SLAITSLKK 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++ A +  +        +     +  E++   +   PS          F   +  + +  
Sbjct: 54  LVDAFSVPMTYFFYSMETHNYHVKIDEQKSFKMEGLPSEFVRLSGD--FSGRSLESMIVT 111

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
                 H   Y    ++  +  +   ++      + L+
Sbjct: 112 IPGGQKHGHKYNHPGEEFAYVLEGVLIV-EIEDKEYLV 148


>gi|257867307|ref|ZP_05646960.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873640|ref|ZP_05653293.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801363|gb|EEV30293.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257807804|gb|EEV36626.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 91

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          A+ +  E   LT   LA  A +  ++  + +R          S E++ K+ +A  +T
Sbjct: 35 ALMKARESAGLTQRELAELAAVPQSTIARIERGDNT------SFETLSKLASALGKT 85


>gi|257067141|ref|YP_003153397.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256799021|gb|ACV29676.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 81

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 15/43 (34%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          ++   +  + +   +  + L  K G+   + +  +R       
Sbjct: 14 RLVNNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSI 56


>gi|227892048|ref|ZP_04009853.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus salivarius ATCC 11741]
 gi|227866158|gb|EEJ73579.1| bifunctional S24 family peptidase/transcriptional regulator
           [Lactobacillus salivarius ATCC 11741]
          Length = 183

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 2/105 (1%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +    E   +T + LAR++G+   S     +   E +        + + L  +   + 
Sbjct: 6   KRLKEAIENMGITQAELARRSGISRASITDYLKGKYEAK--QDKIYPLARALNVSEAWLM 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
              D   +    +        L                  T    
Sbjct: 64  GYSDDASNSVDKSFTFTLTFNLPADLTDELHRLSGELGVSTSALI 108


>gi|227113894|ref|ZP_03827550.1| putative DNA-binding protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 188

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/144 (8%), Positives = 38/144 (26%), Gaps = 5/144 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+    ++I   +  + +    + +  A + G+      + +R         P+  +++K
Sbjct: 1   MSDELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGES-----SPTVATLWK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    N      ++   +D   T +                                + +
Sbjct: 56  IATGMNVAFSTFIEPTLADEDVTYRSGAGSSFKENEAGMHVVPLFPFDEKLRFDMLVIEL 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
               S  +  +     +     + 
Sbjct: 116 EAGASSTSSAHESGVIEHIIVLEG 139


>gi|282600408|ref|ZP_05974197.2| putative transcriptional regulatory protein [Providencia
           rustigianii DSM 4541]
 gi|282565257|gb|EFB70792.1| putative transcriptional regulatory protein [Providencia
           rustigianii DSM 4541]
          Length = 185

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 3/147 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M++  + KI + I  + +  NL+ + L++ +G+   + +K +        R  + ESI  
Sbjct: 1   MSNKINIKIGQKIRLLRQARNLSLNELSQLSGISKAALSKLESGDSN--PRIDTLESIAA 58

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            L      +    +  +        +E +    +      G   +            +  
Sbjct: 59  ALRFPLSDLFTRQNESYPYFVKAIPQEGDYLEQFKFRISMGNVSEIWQLSMKRGAI-INS 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSM 147
           P   S  +    + +     +  +   
Sbjct: 118 PAHMSGTHEHIMLHSGSLMLRFNNEQN 144


>gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437]
          Length = 237

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + ++   H LT   L +K  +   S +  +        R P  E++ KI    
Sbjct: 6  RLKKLRLEHKLTQEQLGKKINVTKVSISGYENGT-----RTPDIETLQKIAEVF 54


>gi|326384044|ref|ZP_08205727.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326197204|gb|EGD54395.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 156

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I E I        ++   LA +AG+     ++ +R       R PS + + +I     
Sbjct: 25  QDIGEFIRSQRLSAKVSLRQLAERAGVSNPYLSQIERG-----LRKPSADVLSQIAKGLR 79

Query: 67  ETICQLLDLPFSDGRTTEKKEK 88
            +   L               +
Sbjct: 80  VSAEVLYVRAGILEARPASPVR 101


>gi|313896884|ref|ZP_07830431.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|312974331|gb|EFR39799.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
          Length = 96

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I EA+        LT   LA K+G+  +  +K +          PS  ++ ++ A     
Sbjct: 33 IIEAMIDARAAAGLTQKELAEKSGIAQSDISKLENGNAN-----PSLRTLQRLAAGMGMR 87

Query: 69 IC 70
          + 
Sbjct: 88 LH 89


>gi|313110592|ref|ZP_07796475.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882977|gb|EFQ41571.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 193

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 38/117 (32%), Gaps = 5/117 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   +  + +   LT + LA +  +     ++ +R         P+   + ++ +   
Sbjct: 15  ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLASGLG 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             + +LL    +      ++ ++                +    +G +   V +P  
Sbjct: 70  IALSELLGDTQAPAEPLCRRAQQEVWEDPASGYRRRQVGARDPRSGCEMVEVEIPAN 126


>gi|310778575|ref|YP_003966908.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
           2926]
 gi|309747898|gb|ADO82560.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
           2926]
          Length = 190

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 42/144 (29%), Gaps = 7/144 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S + I + +  + ++ NL+    +R  G+      + +R         P+  +++K
Sbjct: 1   MKELS-EVIGKNLKEIRKKQNLSLDETSRLTGVSKPMLGQIERGQSN-----PTVSTLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I         + +    +D      K  +  L           F         +   + +
Sbjct: 55  IATGLKVPFSEFMKKSTADYEIVSLKNIDPVLECGEDMKIYTMF-PFNNEENFEILYIKL 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
                  +  +  + ++       
Sbjct: 114 ESGAVHKSQKHRDEVKEYVFVIDG 137


>gi|326203161|ref|ZP_08193027.1| transcriptional regulator, XRE family [Clostridium papyrosolvens
          DSM 2782]
 gi|325986807|gb|EGD47637.1| transcriptional regulator, XRE family [Clostridium papyrosolvens
          DSM 2782]
          Length = 70

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  +    + T + LA   G+   +    +++        PS E  FKI    N  
Sbjct: 2  IQNRIKVLRAERDWTQADLAEMVGISRQAIISIEKYKYT-----PSLELAFKIAEVFNVL 56

Query: 69 ICQLLDLPFSDGRT 82
          I ++ +        
Sbjct: 57 ITEVFEHKEDMNND 70


>gi|229150060|ref|ZP_04278283.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550]
 gi|228633359|gb|EEK89965.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550]
          Length = 149

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E + ++ E    +   +A+K G+   +  K +         +P  +++  +    N 
Sbjct: 2  NLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T+ +L+       +      ++    
Sbjct: 57 TLDELIKGNQDFKKKIHSDAEDEDFE 82


>gi|255652581|ref|ZP_05399483.1| hypothetical protein CdifQCD_20531 [Clostridium difficile
          QCD-37x79]
          Length = 149

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E + ++  +  L    LA    +  ++    +        R P  ESI K+    N T 
Sbjct: 3  GERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQ-----RTPPAESIVKLAEYFNVTT 57

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLY 94
            LL    ++   +        ++ 
Sbjct: 58 DYLLGHTKTNYLVSANIPGMPSIIC 82


>gi|225028236|ref|ZP_03717428.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353]
 gi|224954415|gb|EEG35624.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353]
          Length = 490

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 17/169 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S  K+ + I    +   LT + LA   G++    ++ +          PS + +  
Sbjct: 1   MKKLSITKMADTIIAKRKEQKLTQAQLAEMTGINRGMISRLESCDYT-----PSIDQLQS 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    N  +  L         +++    +   +    +G  G   + +    N    V +
Sbjct: 56  IAEVLNFEVVDLF--EDDKVTSSKPVLDKKYNIAVAGTGYVGLSIATLLSQHNHVTAVDI 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKT----------QDTSMLPLYRKGDILIL 159
              +           QD   +                   Y+  D +++
Sbjct: 114 IPEKVDLINNRKSPIQDDYIEMYLAEKELDLTATLDGEEAYKNADFVVI 162


>gi|326803119|ref|YP_004320937.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326650926|gb|AEA01109.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 115

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           + ++     ++   LA K  +  +   + +        R   TE +  +    N +I  
Sbjct: 7  RLAQLRNEKKMSQRELAEKMDVSQSYVGQWESG-----KRVIPTEKLLDLANFFNVSIDY 61

Query: 72 LLDLPFSDGRTTEK 85
          LL    +    ++ 
Sbjct: 62 LLGYTNNKTPRSKD 75


>gi|311896864|dbj|BAJ29272.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 128

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S +   + E I         +   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MASLNVGSLGEYIREQRRSAQYSLRQLAEVAGVSNPYLSQIERG-----LRKPSAEILQQ 55

Query: 61 ILAATNET 68
          I  A   +
Sbjct: 56 IAKALRIS 63


>gi|296272112|ref|YP_003654743.1| XRE family transcriptional regulator [Arcobacter nitrofigilis DSM
          7299]
 gi|296096287|gb|ADG92237.1| transcriptional regulator, XRE family [Arcobacter nitrofigilis
          DSM 7299]
          Length = 197

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 5/94 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                + + I  + +   +    LA+ AG+     +  +    +G     S E++ K+ 
Sbjct: 1  MTEEFNVGKKIKFLRKEKKMNAKELAKDAGISYGMLSLLESGSTQG-----SVETLRKVA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
               TI  L          T  K  +    Y  
Sbjct: 56 KVLGVTIAHLFTNSEDSDLATSPKNLDNENSYVV 89


>gi|253689846|ref|YP_003019036.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756424|gb|ACT14500.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 200

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++  AI R  ER NL+ + LA++AGL  ++ ++ +          PS E+++ +  A + 
Sbjct: 25  RLAVAIRRERERLNLSVTELAKRAGLAKSTLSQLETGIGN-----PSLETLWALAMALDV 79

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            + QL+       +     E    +  +    +         P G + +   +
Sbjct: 80  QVSQLIGQSRQHVQVIRANEG---VATYSEQANYAATLLAACPAGAQRDIYRL 129


>gi|242372638|ref|ZP_04818212.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349693|gb|EES41294.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 67

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R     + LA+KAG+   + +  +R         PS  +  KI    N
Sbjct: 3  NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAIKIAKIFN 53


>gi|271962500|ref|YP_003336696.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505675|gb|ACZ83953.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 175

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       I E I        ++   LA  AG+     ++ +R       R PS E + +
Sbjct: 1  MALPKVGSIGEYIREQRTHAKISLRQLAAAAGVSNPYLSQIERG-----LRKPSAEILNQ 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86
          I    + +   L              
Sbjct: 56 IAKGLHISSQALYVQAGLIEEREPDS 81


>gi|183980814|ref|YP_001849105.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183174140|gb|ACC39250.1| transcriptional regulatory protein [Mycobacterium marinum M]
          Length = 474

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    +      ++      L      +         P+
Sbjct: 61  ATFFSSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSAHPS 103


>gi|167561623|ref|ZP_02354539.1| DNA-binding protein [Burkholderia oklahomensis EO147]
 gi|167568859|ref|ZP_02361733.1| DNA-binding protein [Burkholderia oklahomensis C6786]
          Length = 216

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 6/172 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 30  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 84

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+ + ++      S         P   +++ + +  + +   
Sbjct: 85  VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEPG 144

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              A           + ++         L+      V   D+       GD 
Sbjct: 145 APRA-PGTSVNLVVSEGTLEVGIHDRRQLLATGDAIVFDADQPYTLRNPGDT 195


>gi|82750060|ref|YP_415801.1| DNA-binding protein [Staphylococcus aureus RF122]
 gi|282915671|ref|ZP_06323442.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          D139]
 gi|283768078|ref|ZP_06340993.1| DNA-binding protein [Staphylococcus aureus subsp. aureus H19]
 gi|82655591|emb|CAI79987.1| probable DNA-binding protein [Staphylococcus aureus RF122]
 gi|282320487|gb|EFB50826.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          D139]
 gi|283461957|gb|EFC09041.1| DNA-binding protein [Staphylococcus aureus subsp. aureus H19]
          Length = 67

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R  L  + LA++AG+   + +  +R         PS  +  KI    N
Sbjct: 3  NRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNF-----MPSVLTAIKIARIFN 53


>gi|325680681|ref|ZP_08160219.1| signal peptidase I [Ruminococcus albus 8]
 gi|324107461|gb|EGC01739.1| signal peptidase I [Ruminococcus albus 8]
          Length = 195

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 140 HKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMS 197
            +    SM       D LI+ +   +   GD ++ +    G+++ K +I+  G+ + +  
Sbjct: 44  VRVDGVSMEDTLFDNDRLIIRTLFYKPARGDVVVCRSDMLGELIIKRVIALGGQRVTI-- 101

Query: 198 LNCCYPVDTVEMS 210
               Y    V + 
Sbjct: 102 ---DYEEGVVTVD 111


>gi|282165400|ref|YP_003357785.1| putative HTH-type transcriptional regulator [Methanocella
          paludicola SANAE]
 gi|282157714|dbj|BAI62802.1| putative HTH-type transcriptional regulator [Methanocella
          paludicola SANAE]
          Length = 63

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R N+T   LA K G+   + N  +    +     PS    FK+       I 
Sbjct: 3  NRLKELRARFNMTQEDLAVKVGVSRQTINAIETGKYD-----PSLPLAFKLARCFETNIE 57

Query: 71 QLLDLP 76
           L    
Sbjct: 58 HLFMEE 63


>gi|256961381|ref|ZP_05565552.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293383669|ref|ZP_06629578.1| toxin-antitoxin system, antitoxin component, Xre family
           [Enterococcus faecalis R712]
 gi|293387218|ref|ZP_06631776.1| toxin-antitoxin system, antitoxin component, Xre family
           [Enterococcus faecalis S613]
 gi|312906217|ref|ZP_07765229.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312909563|ref|ZP_07768418.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|256951877|gb|EEU68509.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291079005|gb|EFE16369.1| toxin-antitoxin system, antitoxin component, Xre family
           [Enterococcus faecalis R712]
 gi|291083356|gb|EFE20319.1| toxin-antitoxin system, antitoxin component, Xre family
           [Enterococcus faecalis S613]
 gi|310627863|gb|EFQ11146.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|311290236|gb|EFQ68792.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
          Length = 174

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 5/102 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +K I   I +  +  N+T   LA + G+ P++ +             PS   I +I    
Sbjct: 7   NKIIATNIKKYLKESNITQKKLAEEIGISPSTMSDYMNLRSN-----PSHGVIQRIADYF 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                 +      +   +  +     L               
Sbjct: 62  KIKKSDIDTTYKENSDPSSLESIYNILEPERQKIVYETAKEQ 103


>gi|255609178|ref|XP_002539013.1| conserved hypothetical protein [Ricinus communis]
 gi|223509258|gb|EEF23370.1| conserved hypothetical protein [Ricinus communis]
          Length = 110

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             +H  + E +  + ++   T   LA  +GL  +   + +    +     PS E +  +
Sbjct: 3  KMATH--LGEKLYELRKQRGFTLDKLAELSGLSKSYIWELENKESQ----RPSAEKLTAL 56

Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                +    ++            E       
Sbjct: 57 ADVLGVSTAFFMEEDIRQPEERHLDEAFFRNYQ 89


>gi|254513703|ref|ZP_05125766.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
 gi|221531933|gb|EEE34990.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
          Length = 209

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 46/170 (27%), Gaps = 22/170 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++ N+T + LA+  GL     +K +          PS  ++  +  A +  
Sbjct: 25  IGREVRAFRKQQNITVAELAQLTGLSIGMLSKIENGNT-----SPSLTTLQSLADALSVP 79

Query: 69  ICQLLDLPFSDGRTTEKKE--------------KEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +                K                +  LL    +   G        T   
Sbjct: 80  LTSFFRQFEERREAVHTKAGEGVELEREGTRANHQYNLLGHIGANGSGVIVEPYLITLTA 139

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
            + V           IY ++ +          + P  + GD L  ++   
Sbjct: 140 ESDVFPTFQHGGIETIYMLEGE--VDYRHGDQIYP-LKPGDTLFFDADAP 186


>gi|154500025|ref|ZP_02038063.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC
          29799]
 gi|150271623|gb|EDM98880.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC
          29799]
          Length = 171

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + R+ + + L+   LA K  +   + +K +   I      P  +++ KI    + ++ 
Sbjct: 5  EKLQRLRKVNGLSQEQLAEKLNVSRQAISKWEMGAI------PDMDNVIKISRFFDCSLD 58

Query: 71 QLLDLP 76
           L++  
Sbjct: 59 YLMNNE 64


>gi|145220714|ref|YP_001131392.1| hypothetical protein Mflv_0109 [Mycobacterium gilvum PYR-GCK]
 gi|315442334|ref|YP_004075213.1| transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145213200|gb|ABP42604.1| protein of unknown function DUF955 [Mycobacterium gilvum PYR-GCK]
 gi|315260637|gb|ADT97378.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1]
          Length = 482

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGARVRQLRSERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    +      ++      L      +         P+
Sbjct: 61  ATFFASQDDTRLIAELREVTMDRDLDVEVDPAEIAEVVASHPS 103


>gi|853809|emb|CAA60798.1| unnamed protein product [Clostridium perfringens]
          Length = 265

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          K+ E +  M +R  L+   LA K G+   + +K +      
Sbjct: 2  KLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVP 42


>gi|83720918|ref|YP_441151.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|167579903|ref|ZP_02372777.1| DNA-binding protein [Burkholderia thailandensis TXDOH]
 gi|167617976|ref|ZP_02386607.1| DNA-binding protein [Burkholderia thailandensis Bt4]
 gi|257140187|ref|ZP_05588449.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83654743|gb|ABC38806.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 219

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 6/172 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 33  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 87

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+ + ++      S         P   +++ + +  + +   
Sbjct: 88  VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEPG 147

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              A           + ++         L+      V   D+       GD 
Sbjct: 148 APRA-PGTSVNLVVSEGTLEVSIHDRRQLLATGDAIVFDADQPYTLRNPGDT 198


>gi|54296994|ref|YP_123363.1| hypothetical protein lpp1035 [Legionella pneumophila str. Paris]
 gi|54297982|ref|YP_124351.1| hypothetical protein lpp2037 [Legionella pneumophila str. Paris]
 gi|54298253|ref|YP_124622.1| hypothetical protein lpp2311 [Legionella pneumophila str. Paris]
 gi|54298343|ref|YP_124712.1| hypothetical protein lpp2402 [Legionella pneumophila str. Paris]
 gi|53750779|emb|CAH12186.1| hypothetical protein lpp1035 [Legionella pneumophila str. Paris]
 gi|53751767|emb|CAH13189.1| hypothetical protein lpp2037 [Legionella pneumophila str. Paris]
 gi|53752038|emb|CAH13464.1| hypothetical protein lpp2311 [Legionella pneumophila str. Paris]
 gi|53752128|emb|CAH13555.1| hypothetical protein lpp2402 [Legionella pneumophila str. Paris]
          Length = 391

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/185 (10%), Positives = 56/185 (30%), Gaps = 7/185 (3%)

Query: 11  EAIDRMAER------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            A + + ++        ++   LAR   L  ++  +   +G E R +  +T S  ++L  
Sbjct: 94  RASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGL 153

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              +  + +    +     + K     +         G+ ++       +   + +    
Sbjct: 154 DEHSFNRKVGYATTFCDLAKHKI-FDVVEGRSEKDLEGYLNTLEGKDKVQVVCIDLSSSY 212

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                 Y         +     +L  +       ++  ++   G    ++    ++  K 
Sbjct: 213 RKLIRRYFPNAMIVADRFHVIRLLNQFCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKR 272

Query: 185 LISRR 189
           L  R 
Sbjct: 273 LNRRE 277


>gi|18309709|ref|NP_561643.1| hypothetical protein CPE0727 [Clostridium perfringens str. 13]
 gi|18144386|dbj|BAB80433.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 268

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          K+ E +  M +R  L+   LA K G+   + +K +      
Sbjct: 2  KLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVP 42


>gi|320156088|ref|YP_004188467.1| hypothetical protein VVM_02450 [Vibrio vulnificus MO6-24/O]
 gi|319931400|gb|ADV86264.1| hypothetical protein VVMO6_01242 [Vibrio vulnificus MO6-24/O]
          Length = 269

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 30/114 (26%), Gaps = 8/114 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--------RNRW 52
           M   + + +  A+ +  +   LT   L+ + G+  ++F +                R   
Sbjct: 1   MQDTTPEYLLAALRQAIKSKGLTYRELSDRLGIPLSTFKRHLYSSNISLDKLLEYCRETD 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
            S E + K+                 +      +  +            GF   
Sbjct: 61  TSLEELQKLAVQLQTNDENYFSHTQDEVFFNFPELYDFYREIRHLRDKDGFRWM 114


>gi|296134047|ref|YP_003641294.1| transcriptional regulator, XRE family [Thermincola sp. JR]
 gi|296032625|gb|ADG83393.1| transcriptional regulator, XRE family [Thermincola potens JR]
          Length = 255

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I + I  + E   L+        GL  T  ++ +R         P+  ++ KI A   
Sbjct: 71  NIGDRIRALREEKGLSLVDFGNLTGLSFTYLSELERGTTV-----PAVGTLKKIAACLG 124



 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +  I E +    +   LT   LA +AG+ P    + +   +       S ++I KI  
Sbjct: 135 RKNSIIAEKLQYARKMKGLTQKELAVRAGISPGLVGQIEMGKVNA-----SLKTIEKISQ 189

Query: 64  ATNETICQLLDLPF 77
               ++C L+    
Sbjct: 190 VLGVSVCYLILDRE 203


>gi|229191966|ref|ZP_04318936.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876]
 gi|228591517|gb|EEK49366.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876]
          Length = 144

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + ++  L+   LA + G         ++       R P  +++ KI      +
Sbjct: 2  LGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQ-----REPDYDTLKKIADFFEVS 56


>gi|315231266|ref|YP_004071702.1| HTH-type transcriptional regulator protein [Thermococcus
          barophilus MP]
 gi|315184294|gb|ADT84479.1| HTH-type transcriptional regulator protein [Thermococcus
          barophilus MP]
          Length = 65

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E   LT   LA+  G+   +    ++   +     PS    FKI       I 
Sbjct: 3  NRLRELREARGLTQEELAKILGVTRQTIIAIEKGKYD-----PSLRLAFKIARFFGVKIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DIFIYEG 64


>gi|119026382|ref|YP_910227.1| putative transcriptional regulator [Bifidobacterium adolescentis
          ATCC 15703]
 gi|118765966|dbj|BAF40145.1| putative transcriptional regulator [Bifidobacterium adolescentis
          ATCC 15703]
          Length = 164

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 18/42 (42%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            ++ E +  M  +  +T   LA + G+  +  ++ +    +
Sbjct: 20 EDQLLEGLVSMRVQRGMTQEQLADEMGVSQSYISQIENGRKK 61


>gi|27365681|ref|NP_761209.1| hypothetical protein VV1_2362 [Vibrio vulnificus CMCP6]
 gi|27361829|gb|AAO10736.1| hypothetical protein VV1_2362 [Vibrio vulnificus CMCP6]
          Length = 269

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 30/114 (26%), Gaps = 8/114 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--------RNRW 52
           M   + + +  A+ +  +   LT   L+ + G+  ++F +                R   
Sbjct: 1   MQDTTPEYLLAALRQAIKSKGLTYRELSDRLGIPLSTFKRHLYSSNISLDKLLEYCRETD 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
            S E + K+                 +      +  +            GF   
Sbjct: 61  TSLEELQKLAVQLQTNDENYFSHTQDEVFFNFPELYDFYREIRHLRDKDGFRWM 114


>gi|37680165|ref|NP_934774.1| hypothetical protein VV1981 [Vibrio vulnificus YJ016]
 gi|37198911|dbj|BAC94745.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 268

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 30/114 (26%), Gaps = 8/114 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG--------RNRW 52
           M   + + +  A+ +  +   LT   L+ + G+  ++F +                R   
Sbjct: 1   MQDTTPEYLLAALRQAIKSKGLTYRELSDRLGIPLSTFKRHLYSSNISLDKLLEYCRETD 60

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
            S E + K+                 +      +  +            GF   
Sbjct: 61  TSLEELQKLAVQLQTNDENYFSHTQDEVFFNFPELYDFYREIRHLRDKDGFRWM 114


>gi|134299094|ref|YP_001112590.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051794|gb|ABO49765.1| putative transcriptional regulator, XRE family [Desulfotomaculum
          reducens MI-1]
          Length = 69

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + ++I ++ ++   T S LA++ GL        ++       R P+ +++  I       
Sbjct: 3  VGKSIAKLRKQKKWTQSKLAKETGLSRGYIASIEQG-----RRHPALKTLTIIAEKLGVE 57

Query: 69 ICQLLDLPFS 78
          + +L+     
Sbjct: 58 MRELIRGGDH 67


>gi|331086629|ref|ZP_08335706.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330409795|gb|EGG89230.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 193

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             I  +  +H +T   LA K  +   + +K +    +G       E + K L 
Sbjct: 6  GNTIRTLRIKHGITQKELAEKLNVSDKTISKWE--TEKGLPDISIVEELAKALH 57


>gi|270284600|ref|ZP_05966400.2| toxin-antitoxin system, antitoxin component, Xre family
          [Bifidobacterium gallicum DSM 20093]
 gi|270276519|gb|EFA22373.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bifidobacterium gallicum DSM 20093]
          Length = 70

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            E  +L+   LA+++G+   + N+ +R  I      P   ++ K+  A  +T
Sbjct: 17 AREEAHLSQEELAKRSGVSRATVNRIERGRI-----MPLLNTLEKLAKAMGKT 64


>gi|260430057|ref|ZP_05784032.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260418980|gb|EEX12235.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 184

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 3/139 (2%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++++   I  + +   LT   LA   G      +  +R   E   R    E I  +   T
Sbjct: 2   NRQVGTDIRALRKSRGLTLQALAEATGRSAGWLSLIERGQAEPSIRD--LEKIAALFGLT 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                +       +     ++E  +P+               +        +V  P    
Sbjct: 60  ISFFFRSAGRAEREQGLVLRQEDRMPIGSDESGLVEELLSPSLDGAFEMIRSVFAPGASR 119

Query: 126 PHNGIYAIQTQDTRHKTQD 144
                 A +          
Sbjct: 120 DEMRPRAGREDG-AVLVSG 137


>gi|256374687|ref|YP_003098347.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255918990|gb|ACU34501.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 86

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S + I   I  +     L+ + LA    ++P +    +R      + +PS +   +I   
Sbjct: 8  SEQPIHNRIGVLRAERGLSRADLAEAVEVNPQTIGALERG-----DHYPSLDLALRICEV 62

Query: 65 TN 66
            
Sbjct: 63 FG 64


>gi|171321294|ref|ZP_02910256.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MEX-5]
 gi|171093421|gb|EDT38604.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MEX-5]
          Length = 227

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 6/171 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + KI AA   +
Sbjct: 35  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+   ++      S         P   +++ + +  + +   
Sbjct: 90  VAAFLRRHAVNGFEHLAAERAARVVSSSGRFSARALYPEGEPAAAEFHELRIAPLHTEPG 149

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              A           + ++         L+      V   D+       GD
Sbjct: 150 TRRA-PGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199


>gi|158339289|ref|YP_001520466.1| helix-turn-helix domain-containing protein [Acaryochloris marina
          MBIC11017]
 gi|158309530|gb|ABW31147.1| helix-turn-helix domain protein [Acaryochloris marina MBIC11017]
          Length = 96

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
             +   LT + +A K G   T+  + +     G+   PS  ++ K   A   
Sbjct: 35 AARQNAGLTQADIAEKMGTKATAVTRLESSLSSGK-HSPSLSTLRKYAKAVGC 86


>gi|167648317|ref|YP_001685980.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167350747|gb|ABZ73482.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 69

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  A+        LT + LA   G+   + N  +          PST    K+  A   +
Sbjct: 6  LLNALKAARTEAGLTQADLAELVGVTRKTINTVENGVFV-----PSTVLSLKLARALGTS 60

Query: 69 ICQLLDLPF 77
          +  L  LP 
Sbjct: 61 VEALFQLPE 69


>gi|324996159|gb|EGC28069.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK678]
 gi|327458575|gb|EGF04925.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK1]
 gi|327471774|gb|EGF17215.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK408]
 gi|327490411|gb|EGF22195.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK1058]
          Length = 74

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESKGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|319792387|ref|YP_004154027.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594850|gb|ADU35916.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 236

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 19/43 (44%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
           +         +    +R   T + LA ++G+  T+ ++++R 
Sbjct: 18 PTLDRTTFGHRLRTARKRFGWTLAQLAERSGVSITTISRAERG 60


>gi|304443271|ref|YP_003857101.1| transcription regulator [Staphylococcus phage SAP-26]
 gi|302749879|gb|ADL66964.1| transcription regulator [Staphylococcus phage SAP-26]
          Length = 84

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          +D   +R   T S  A K G+ P+++N  +      + R 
Sbjct: 10 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRD 49


>gi|262044546|ref|ZP_06017602.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038090|gb|EEW39305.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 193

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 8/138 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   I    E    + + LA  AG      +K +R         P+   + ++  A 
Sbjct: 9   NQRISARIRIERESRGWSLNDLAELAGASRAMIHKIERGES-----SPTASMLGRLSGAF 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             ++  L+           +     P+   P S       S           + +P    
Sbjct: 64  GISMSTLIARAEMQEGKLLR-FASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPGSD 122

Query: 126 PHNGI--YAIQTQDTRHK 141
                  YA+  Q    +
Sbjct: 123 VPMPAASYALARQLIWLQ 140


>gi|240948598|ref|ZP_04752971.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
 gi|240297106|gb|EER47677.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
          Length = 114

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 1  MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          M+  + +    I  AI +  +   LT + LA   G+   + ++ +R         PS   
Sbjct: 1  MSDKTEQLVQSIGRAISKYRQAVGLTQAQLAEILGISNDAVSRMERGKSV-----PSVLR 55

Query: 58 IFKILAATNETICQ 71
          + ++       +  
Sbjct: 56 LLELSEIFGCEVAD 69


>gi|229084781|ref|ZP_04217041.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44]
 gi|228698528|gb|EEL51253.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44]
          Length = 181

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I++  +   L+   LA  A + P+  ++ +R       +      + K L     
Sbjct: 5  DIGKKIEKQRKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKV--LAKALDVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|159036046|ref|YP_001535299.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157914881|gb|ABV96308.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I  +     ++   L+ +AG+     ++ +R       R PS E + ++ +A   
Sbjct: 9  NIGGFIRDLRRNAKISLRQLSEQAGVSNPYLSQIERG-----LRKPSAEVLQQLASALRV 63

Query: 68 TICQLL 73
          +   + 
Sbjct: 64 STPAMY 69


>gi|118619629|ref|YP_907961.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118571739|gb|ABL06490.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
          Length = 474

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    +      ++      L      +         P+
Sbjct: 61  ATFFSSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSAHPS 103


>gi|54296056|ref|YP_122425.1| hypothetical protein lpp0074 [Legionella pneumophila str. Paris]
 gi|148358226|ref|YP_001249433.1| hypothetical protein LPC_0087 [Legionella pneumophila str. Corby]
 gi|296105580|ref|YP_003617280.1| hypothetical protein lpa_00110 [Legionella pneumophila 2300/99
          Alcoy]
 gi|53749841|emb|CAH11222.1| hypothetical protein lpp0074 [Legionella pneumophila str. Paris]
 gi|148279999|gb|ABQ54087.1| hypothetical protein LPC_0087 [Legionella pneumophila str. Corby]
 gi|295647481|gb|ADG23328.1| hypothetical protein lpa_00110 [Legionella pneumophila 2300/99
          Alcoy]
          Length = 94

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + +A+  M ++  LT   LA + G    + ++ ++         PS  ++ K   A    
Sbjct: 30 LIDALLTMRQKAGLTQEELAERMGTKKGNISRLEKGNTN-----PSWNTLEKYAHACGFD 84


>gi|27377331|ref|NP_768860.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum
          USDA 110]
 gi|27350474|dbj|BAC47485.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum
          USDA 110]
          Length = 182

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R  L+   LA++AG+  ++ +  +   +      PS  ++ +IL     
Sbjct: 4  DIGGRLRFIRARQKLSQRELAKRAGVTNSTISLIESNQMN-----PSVGALKRILDGIPM 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GLAEFF 64


>gi|325848985|ref|ZP_08170495.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325480629|gb|EGC83691.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 67

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I    +   L+   LA+  GL   S    +   I      PS E+ +KI    ++
Sbjct: 4  EINNKIREFRKEKGLSQHKLAKMVGLKRRSIMAYENNTI-----SPSLETAYKICKVLDK 58

Query: 68 TICQLLDLP 76
           I ++    
Sbjct: 59 DIKEVFIFK 67


>gi|325068074|ref|ZP_08126747.1| Cro/CI family transcriptional regulator putative [Actinomyces oris
           K20]
          Length = 146

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 2/138 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  + ++H  T   LA K G+   +  K +     G     S   + +      + 
Sbjct: 2   ISSNIAALRKKHRWTQEALANKVGVSRQTIAKWE--APGGNPDISSCIRLAQAFDVAIDD 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +        S      K      ++      +       VF   +    + + +I     
Sbjct: 60  LVNGDTSFVSMLDRPGKYIFGTVVIDQDGRLTLPVRARKVFNIKSGDELLLIGDIDQGLA 119

Query: 129 GIYAIQTQDTRHKTQDTS 146
            + A          +   
Sbjct: 120 LMDAQFFVQAARHVEGDH 137


>gi|307710469|ref|ZP_07646906.1| putative transcriptional regulator [Streptococcus mitis SK564]
 gi|307618732|gb|EFN97871.1| putative transcriptional regulator [Streptococcus mitis SK564]
          Length = 113

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + ++  LT   +A K G+   ++   +R   +     P+ E++ KI    N +
Sbjct: 5  ERLKTLRKQAQLTQVDVAEKLGISQPAYASWERGIKK-----PTQENLVKIAQILNVS 57


>gi|303326710|ref|ZP_07357152.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862698|gb|EFL85630.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 89

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            + R  +   L+   LA + G+  +  +  +        R P+   + KI  +      
Sbjct: 22 AVLRRYRDAAGLSQRQLADRVGITKSYVSSLELGY-----RAPNLNLLIKIARSLEVRPG 76

Query: 71 Q 71
          +
Sbjct: 77 E 77


>gi|296103507|ref|YP_003613653.1| putative transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295057966|gb|ADF62704.1| putative transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 99

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 5  SHKKIWE---------AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          S ++I           A++++ E  N++ + LA   G+   +  K ++ G + R     
Sbjct: 15 SQERIAAKVEVMRRIVALNQLREELNISQTELAAAMGVKQPTVAKIEQPGNDPRLSTLK 73


>gi|291550212|emb|CBL26474.1| Helix-turn-helix [Ruminococcus torques L2-14]
          Length = 116

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I + I  + +   ++    A++ G+  +S +  K+     +   P ++ I  I    +
Sbjct: 2  KTISDKIFELLKEKGMSQKEFAQRTGIAESSISDWKK-----KRTNPVSDKILIICEVLD 56

Query: 67 ETICQLLDLPFS 78
           T  +LL     
Sbjct: 57 VTPYELLSGAEH 68


>gi|167916740|ref|ZP_02503831.1| gp48 [Burkholderia pseudomallei 112]
          Length = 105

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            AI        LT + +A + G   ++ ++ +      +   PS  ++ K  AA  
Sbjct: 42 LRAILSARREAGLTQAQIAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97


>gi|167620938|ref|ZP_02389569.1| gp48 [Burkholderia thailandensis Bt4]
          Length = 105

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            AI        LT + +A + G   ++ ++ +      +   PS  ++ K  AA  
Sbjct: 42 LRAILSARREAGLTQAQIAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97


>gi|167567537|ref|ZP_02360453.1| gp48 [Burkholderia oklahomensis EO147]
          Length = 105

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            AI        LT + +A + G   ++ ++ +      +   PS  ++ K  AA  
Sbjct: 42 LRAILSARREAGLTQAQIAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97


>gi|149203921|ref|ZP_01880889.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
 gi|149142363|gb|EDM30408.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
          Length = 207

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +    T    A++AGL  ++ +K +   +      P+ +++ K+      
Sbjct: 26 DLGARVRSLRKARGWTLEQAAKQAGLARSTLSKIENGQM-----SPTYDALKKLAQGLEI 80

Query: 68 TICQLLDLPFS 78
          ++ QL   P  
Sbjct: 81 SVPQLFTPPSR 91


>gi|42783659|ref|NP_980906.1| helix-turn-helix domain-containing protein [Bacillus cereus ATCC
           10987]
 gi|218905704|ref|YP_002453538.1| helix-turn-helix domain protein [Bacillus cereus AH820]
 gi|42739588|gb|AAS43514.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10987]
 gi|218535752|gb|ACK88150.1| helix-turn-helix domain protein [Bacillus cereus AH820]
          Length = 113

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/114 (7%), Positives = 32/114 (28%), Gaps = 6/114 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H  + + I  + +  ++T +  A K  + P   +  +      +    + + + K+ 
Sbjct: 1   MLQH--LGQTIRTLRKHKHITLNEFAAKLNVSPGYLSNLE----TAKTDTITLDLLQKLQ 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              N       +          + ++   +L      +    +  +        
Sbjct: 55  EELNLFPALTQETDSQHHELHFRLQRLCQVLQQVHDTAPELANFFIAHVEKGLE 108


>gi|21242245|ref|NP_641827.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21107669|gb|AAM36363.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 109

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +    +R  LT + L ++A L  T+ +  +       +R PS +++ ++      +  
Sbjct: 7  ARLREARDRRGLTQAELGKEASLPSTTISHFESG-----SRKPSFDNLRRLTKVLGVSTD 61

Query: 71 QLL 73
           L+
Sbjct: 62 YLM 64


>gi|306821372|ref|ZP_07454980.1| XRE family transcriptional regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550590|gb|EFM38573.1| XRE family transcriptional regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 135

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  + E  NLT S LA+  G+   + +  +    + R R    E   K+    +  I
Sbjct: 4   GKKLKALREDKNLTQSELAKILGITLKTVSNYE--TKDMRPR--KMEMYEKMANFFDVNI 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             LL           +      +     + +     +G+F  G+  + 
Sbjct: 60  NYLLTEEDYFIMQAGEDFGYKGV---QDAKTIAQSMAGLFAGGDLPDE 104


>gi|145592882|ref|YP_001157179.1| XRE family transcriptional regulator [Salinispora tropica
          CNB-440]
 gi|145302219|gb|ABP52801.1| transcriptional regulator, XRE family [Salinispora tropica
          CNB-440]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I  +     ++   L+ +AG+     ++ +R       R PS E + ++ +A   
Sbjct: 9  NIGGFIRDLRRSAKISLRQLSEQAGVSNPYLSQIERG-----LRKPSAEVLQQLASALRV 63

Query: 68 TICQLL 73
          +   + 
Sbjct: 64 STPAMY 69


>gi|291537327|emb|CBL10439.1| Helix-turn-helix [Roseburia intestinalis M50/1]
          Length = 138

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             + I + I +  +  +LT + +  K G+   + +  +R       R P+  ++ ++  
Sbjct: 3  LDIQSIGKRIKKRRKELHLTQTEIKEKTGISSGNMSDIERGN-----RLPAATTLAQLSE 57

Query: 64 ATNETICQ 71
            + +I  
Sbjct: 58 ILDCSIDW 65


>gi|238023508|ref|YP_002907740.1| DNA-binding protein [Burkholderia glumae BGR1]
 gi|237878173|gb|ACR30505.1| DNA-binding protein [Burkholderia glumae BGR1]
          Length = 201

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 42/151 (27%), Gaps = 17/151 (11%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A
Sbjct: 20  TPPRVGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 74

Query: 65  TNETICQLLDL------------PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
              ++ +L                          + ++ +           +     P G
Sbjct: 75  LGISLDELFAPPKSPETIRVDGLHDIPTLAGHDGQYQLRVWGPIELAGRFEWYELTLPAG 134

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
               +         H  + A   +       
Sbjct: 135 GALVSNAHEPGTREHLTVLAGAVEIEAGAVS 165


>gi|284031797|ref|YP_003381728.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283811090|gb|ADB32929.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836]
          Length = 198

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + +R  +T   LA + G+  ++ ++ +        R P+ E +  +      T
Sbjct: 12  VGARLKHLRQRRTITLVELADQTGISISTLSRLEAG-----LRRPTLEQLLPLARVHGVT 66

Query: 69  ICQLLDLPFSDGR----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           + +L+D P +          + +    +L       G      V PTGN  +        
Sbjct: 67  LDELVDAPPTGNPRVTLRPIRADDGAVILPLTRRPGGIQAYKFVLPTGN-DDAEPQLRTH 125

Query: 125 SPHNGIYAIQTQDTRH 140
             ++  Y +       
Sbjct: 126 EGYDWAYVLNGTLRLV 141


>gi|226306979|ref|YP_002766939.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226186096|dbj|BAH34200.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
          Length = 190

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K +  A+ R   R  L+ S +AR+A +  ++ ++ +          PS E+++ +  A 
Sbjct: 13 QKLVAVALKRERARAGLSLSEVARRADIAKSTLSQLESGLGN-----PSLETLWALGNAL 67

Query: 66 NETICQ 71
               Q
Sbjct: 68 GVPFSQ 73


>gi|255658714|ref|ZP_05404123.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
 gi|260849104|gb|EEX69111.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
          Length = 189

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + +  + ++  LT    +++ G+  ++    +        R P+  ++ K+    + +  
Sbjct: 5  DRLRALRKKSGLTQDEFSKQTGIGRSAVGMYESG-----KREPNYTTLSKVARFYHVSTD 59

Query: 71 QLLDLPFSDGRTTEKK 86
           LL    +      +K
Sbjct: 60 YLLGRTDTPAEPPTRK 75


>gi|307150337|ref|YP_003885721.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306980565|gb|ADN12446.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 116

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +   + I +  +   L+   LA   GLD T  +K +    +   +     ++ + L
Sbjct: 2  EENFGQIIRKARKDKGLSQRELAESLGLDFTYLSKLENNRADYAPKEDIIRALAENL 58


>gi|166032918|ref|ZP_02235747.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC
          27755]
 gi|166027275|gb|EDR46032.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC
          27755]
          Length = 298

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          KI + I    +   +T   LA K G+   S +K +R  
Sbjct: 5  KIGKYIASKRKSLGMTQKQLAEKLGMSDKSVSKWERGV 42


>gi|157362947|ref|YP_001469714.1| XRE family transcriptional regulator [Thermotoga lettingae TMO]
 gi|157313551|gb|ABV32650.1| transcriptional regulator, XRE family [Thermotoga lettingae TMO]
          Length = 185

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 14/163 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I E I  + +   LT   LA+ +G+ P   ++ +          PS  ++  IL+A  
Sbjct: 6   DNIGEKIRSLRQSKKLTVRELAKLSGVTPGLISQIEHG-----KVSPSLSTLKAILSALG 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ETI  L++    D        KE         G      S      + + +  +      
Sbjct: 61  ETIISLVEQDVGDQIIKGIVRKEERRKVIVSPGLTYELLSSKNNAYSMFISY-LEPGADS 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
               YA +  ++    Q    +         + + +I +  GD
Sbjct: 120 RESFYAHEGIESGIVIQGEVEI--------TVGDKSIVLREGD 154


>gi|330947175|gb|EGH47915.1| LexA repressor [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 48

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           G++  K L  R  + I L+  N  Y    V    
Sbjct: 1   GEVTIKRLQRRADQ-IRLLPRNPAYEPIIVTPDQ 33


>gi|331659971|ref|ZP_08360909.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206]
 gi|315296978|gb|EFU56258.1| helix-turn-helix protein [Escherichia coli MS 16-3]
 gi|331053186|gb|EGI25219.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206]
          Length = 370

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 36/127 (28%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    ER  LT   LA    L   + +  ++ GI       + E I  +L    E   
Sbjct: 5   ERLRIARERRGLTQRALAEATELTSKTISNYEKAGIFDAIASDTMERISAVLGYPIEFFL 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                  S    + +   ++       +   G     +    +    +  P +       
Sbjct: 65  DRDVPTLSPEAVSFRAMTKLTAQKRDSALGAGKLAQELSAWIDGQFKLPKPNVPDCSFDG 124

Query: 131 YAIQTQD 137
           Y+   + 
Sbjct: 125 YSEPERA 131


>gi|297198022|ref|ZP_06915419.1| regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|297146969|gb|EFH28433.1| regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 190

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 7/139 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+ +   +T + L+   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 9   EVGPRLRRLRKDREVTLAALSETTGISVSTLSRLESG-----LRKPSLELLLPIAQAHQV 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L+  P            E     F P                +            +
Sbjct: 64  PLDELVGAPPVGDPRVRSAPLERHGRTFWPLTRQPGGLQAFKVLVPRREEEPELRTHEGY 123

Query: 128 NGIYAIQTQDTRHKTQDTS 146
             +Y +  +          
Sbjct: 124 EWLYVLAGRLRV--VLGDH 140


>gi|298292634|ref|YP_003694573.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929145|gb|ADH89954.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 123

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            AI    E   L+ S LA KAG+     ++ +    +G     +  ++ KI  A 
Sbjct: 66  NAIRVWREHRGLSASSLAEKAGIARAFLSQIETGNRDG-----TVATLKKIADAL 115


>gi|241894930|ref|ZP_04782226.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides
          ATCC 33313]
 gi|241871938|gb|EER75689.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides
          ATCC 33313]
          Length = 171

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  + + + LT + LA K G+   + +  ++ G        S E +  I      +
Sbjct: 5  IKELRKSNGLTQAQLASKIGVSQPTLSLLEKDGN-------SLEDMLPIAQYFGVS 53


>gi|237739911|ref|ZP_04570392.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
 gi|229423519|gb|EEO38566.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
          Length = 184

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 51/191 (26%), Gaps = 36/191 (18%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + +      ++   LA K  L  +  ++ ++         PS E++ KI    +  
Sbjct: 3   IGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L++    D R  E             +             G          I    N
Sbjct: 58  VAYLIEDEEDDIRNIE--------YVKAANVRYIESIDSNIKMG----------ILLASN 99

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186
               ++           S    Y  G           N  + + I     ++    K   
Sbjct: 100 KEKNMEPIIYEIGVDGESGRDYYSHG-----------NSEEFIYILEGELEVYVANKKYK 148

Query: 187 SRRGRSIDLMS 197
             +G S+   S
Sbjct: 149 LAKGDSLYFKS 159


>gi|256396613|ref|YP_003118177.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362839|gb|ACU76336.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM
           44928]
          Length = 283

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 2/115 (1%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           EAI    ER   T   L+  +GL   +    +R     + R  + + +   L      + 
Sbjct: 13  EAIRAWRERRGWTQEELSHASGLSTRAIRSLERGRT-LKPRRTTVQMLADALQVPRARLM 71

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIR 124
             +     D                    +     +         W    +P   
Sbjct: 72  GTVRRAVGDADAEADGTLGNVATGSVEGDAVATVSAEARSIHAGAWVPRELPPDL 126


>gi|258651259|ref|YP_003200415.1| phage repressor [Nakamurella multipartita DSM 44233]
 gi|258554484|gb|ACV77426.1| putative phage repressor [Nakamurella multipartita DSM 44233]
          Length = 133

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLIS-RRGRSIDLMS 197
           +    SM P    GD +++   + +  G  +++    R   ++ K  +  +      ++ 
Sbjct: 12  RVSGPSMTPTLVDGDRVLVRYGVAIRPGSVVVLVHPTRADLLLIKRAVRQQSDGRWWVLG 71

Query: 198 LNC 200
            N 
Sbjct: 72  DNP 74


>gi|215401175|ref|YP_002332480.1| cro [Staphylococcus phage phiSauS-IPLA88]
 gi|215260402|gb|ACJ64533.1| gp5 [Staphylococcus phage phiSauS-IPLA88]
          Length = 84

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +D   +R   T S  A K G+ P+++N  +      + R      I K L 
Sbjct: 10 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRDAF--RIAKTLD 58


>gi|51247424|pdb|1SQ8|A Chain A, A Variant 434 Repressor Dna Binding Domain Devoid Of
          Hydroxyl Groups, Nmr, 20 Structures
          Length = 64

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           E I     +  L  + LA+K G+D  +  + +    +   R      + + L
Sbjct: 4  GERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAK---RPRFLPELARAL 53


>gi|325961603|ref|YP_004239509.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467690|gb|ADX71375.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 201

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 6/162 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   + +  +    T   LA  AG+        ++         PS  ++ +I  A    
Sbjct: 12  IGSRVRQERQSRGWTLDQLAEAAGVSRRMVVNVEQGAAN-----PSVGTLLRISDALGIG 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L+D P      T  +  +   L+    G  G   +G            +      H 
Sbjct: 67  LPALVDAPRP-RPVTVVRSGDGAALWSSARGGRGVLVAGTASPDVVELWDWILASGDQHQ 125

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                       + +  S+  +      ++         GD 
Sbjct: 126 SEAHAPGTKELLQVRQGSVTVVVGGETFVLDAGDAVSFPGDV 167


>gi|323359528|ref|YP_004225924.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323275899|dbj|BAJ76044.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 183

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT     +I   + R  ER +L+ S LAR+AG+   + ++ +  G       PS E+++ 
Sbjct: 1  MTDL-GDRIAATLRRERERRDLSVSELARRAGVAKATVSQLESGGGN-----PSVETLWA 54

Query: 61 ILAATNETI 69
          +  A     
Sbjct: 55 LATALEIPF 63


>gi|199597306|ref|ZP_03210737.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus
           HN001]
 gi|229551815|ref|ZP_04440540.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258507963|ref|YP_003170714.1| spermidine/putrescine transport operon transcriptional regulator
           [Lactobacillus rhamnosus GG]
 gi|258539216|ref|YP_003173715.1| spermidine/putrescine transport operon transcriptional regulator
           [Lactobacillus rhamnosus Lc 705]
 gi|199591822|gb|EDY99897.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus
           HN001]
 gi|229314759|gb|EEN80732.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257147890|emb|CAR86863.1| Spermidine/putrescine transport operon transcriptional regulator
           [Lactobacillus rhamnosus GG]
 gi|257150892|emb|CAR89864.1| Spermidine/putrescine transport operon transcriptional regulator
           [Lactobacillus rhamnosus Lc 705]
 gi|259649290|dbj|BAI41452.1| transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 179

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 40/176 (22%), Gaps = 17/176 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +  R NLT   L  +  L     ++ +          PS E+ F IL+   E
Sbjct: 2   DIGSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQS-----SPSLETFFDILSVLGE 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +          D            + Y                  N+   V +       
Sbjct: 57  SPADFFREEPVDSLVYH---ASDQVTYLDEDKGYQLKWLVPESNENEMEPVMIDFAPDGI 113

Query: 128 NGIY-AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
              +     +   +       L        L+         G+ +         + 
Sbjct: 114 FKTFEPSPAETFVYVVSGKVKL--------LLGEQTYVAKKGETIYFHATKQHQLV 161


>gi|160878258|ref|YP_001557226.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160426924|gb|ABX40487.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 163

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +KI + I    +   LT   LA   GL   + +K +          P   ++  +     
Sbjct: 4  EKIGKFIADRRKVRGLTQQQLADDLGLTNKAISKWETGQG-----MPDITTLPILAEMLG 58

Query: 67 ETICQ 71
           T+ +
Sbjct: 59 ITVNE 63


>gi|328947544|ref|YP_004364881.1| hypothetical protein Tresu_0643 [Treponema succinifaciens DSM
          2489]
 gi|328447868|gb|AEB13584.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 110

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            ++K    +  + E   L+   LA K G+  +     +  G+  R      E++ KI  
Sbjct: 1  MGNEKFMARVRELRESRKLSQEALADKVGVTKSGVAMWETRGVVPRK-----ETLEKICD 55

Query: 64 ATNET 68
              T
Sbjct: 56 VLGTT 60


>gi|196047881|ref|ZP_03115059.1| HTH-type transcriptional regulator SinR [Bacillus cereus 03BB108]
 gi|196021137|gb|EDX59866.1| HTH-type transcriptional regulator SinR [Bacillus cereus 03BB108]
          Length = 66

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I    +    T   LA+++G+   + ++ +R         PS ++I KI      T
Sbjct: 2  IEQVIKEKRKNKGWTQLTLAKQSGVPQPTISQIERGERI----SPSYQNIIKIAKVLEIT 57

Query: 69 ICQ 71
          I +
Sbjct: 58 IEE 60


>gi|157693836|ref|YP_001488298.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157682594|gb|ABV63738.1| transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 156

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +R   +   LA  A +  +  +K +R       R PS + + K+ ++    
Sbjct: 2   IGKVIRIYRKRKGYSIQQLAEDAHVSKSYLSKIERGVH----RNPSVQFLKKVSSSLEID 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           + +L D         E  E E    +   +   G     ++
Sbjct: 58  LQELFDAETMMFHDAESGEHEWR-EHIVNAVQSGMPKEELY 97


>gi|254302178|ref|ZP_04969536.1| MerR family transcriptional regulator [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322370|gb|EDK87620.1| MerR family transcriptional regulator [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 184

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 36/191 (18%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + +      ++   LA K  L  +  ++ ++         PS E++ KI    +  
Sbjct: 3   IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L++    D R  E  +KE                      G          I   +N
Sbjct: 58  VAYLIEDEEDDIRNIEHIKKENIRY--------IESLDSNIKMG----------ILLSNN 99

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186
               ++           S    Y  G              + + I     ++    K   
Sbjct: 100 REKNMEPIIYEIGVDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148

Query: 187 SRRGRSIDLMS 197
             +G S+   S
Sbjct: 149 LSKGDSLYFKS 159


>gi|33593601|ref|NP_881245.1| DNA-binding protein [Bordetella pertussis Tohama I]
 gi|33572957|emb|CAE42899.1| DNA-binding protein [Bordetella pertussis Tohama I]
 gi|332383006|gb|AEE67853.1| DNA-binding protein [Bordetella pertussis CS]
          Length = 95

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             +  ++   +    +   LT S LA + GL  +  +  +           S E +   
Sbjct: 17 PLLTTGQLGAVLQAARKAQGLTQSALASRIGLSQSRVSHLELNA-----HQLSVEQLLAW 71

Query: 62 LAATN 66
           AA  
Sbjct: 72 CAALG 76


>gi|268319240|ref|YP_003292896.1| hypothetical protein FI9785_755 [Lactobacillus johnsonii FI9785]
 gi|262397615|emb|CAX66629.1| sip1 [Lactobacillus johnsonii FI9785]
          Length = 213

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186
            + +             SM P +   D +I     ++  GD +++      G +  K +I
Sbjct: 28  FFVLNKYVFANLTVSGISMQPTFENNDRVIALRHAKIKEGDIVIVDAPDEPGALYIKRVI 87

Query: 187 SRRGRSID 194
              G +I 
Sbjct: 88  GLPGDTIV 95


>gi|225405510|ref|ZP_03760699.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme
          DSM 15981]
 gi|225042963|gb|EEG53209.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme
          DSM 15981]
          Length = 63

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
          +++ +   L+    AR   +   + +  +          PS E  F+I     +TI +L 
Sbjct: 2  EQLRKEMGLSQEEFARALRVSRQTVSSIENGKYN-----PSLELAFQIADFFQKTIEELF 56

Query: 74 DLPFSDG 80
              +D 
Sbjct: 57 LWKENDQ 63


>gi|196044284|ref|ZP_03111520.1| transcriptional repressor [Bacillus cereus 03BB108]
 gi|225862972|ref|YP_002748350.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102]
 gi|229183334|ref|ZP_04310562.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1]
 gi|196024923|gb|EDX63594.1| transcriptional repressor [Bacillus cereus 03BB108]
 gi|225790632|gb|ACO30849.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102]
 gi|228600118|gb|EEK57710.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1]
          Length = 149

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + S LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|120599708|ref|YP_964282.1| bacteriophage CI repressor [Shewanella sp. W3-18-1]
 gi|120559801|gb|ABM25728.1| bacteriophage CI repressor [Shewanella sp. W3-18-1]
          Length = 230

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 56/208 (26%), Gaps = 12/208 (5%)

Query: 13  IDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           ++R+ +   +     LA   G+ P SF+  +             E + +I  AT  ++  
Sbjct: 28  VERLIKLFGVKNRLELADLLGMHPGSFSTWQTRNTTPH------ELLIRIHLATGISMNY 81

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L     +  +   K      + +            G      K  T+      S  +  +
Sbjct: 82  LCFGISNGEQDPYKYGASKTVEFL-DGKVVEESVDGKMHARLKIVTID-DGKISSLDHFF 139

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR 191
           A             +   + +    L+  ++ + N      +                  
Sbjct: 140 ANTEFLNALGLDGDNDDLVVKSDGHLLFINSSKKNVNSGRYLYSIGDVYQIGTFKLLPDG 199

Query: 192 SIDLMSLNCCYPVDTVEMSDIEWIARIL 219
              L   N  YP   +     +   +++
Sbjct: 200 ITYLFDDNAKYP---INADVTKIHGKVV 224


>gi|6706995|gb|AAF25536.1|AF104994_6 signal peptidase [Streptomyces coelicolor A3(2)]
 gi|2707210|gb|AAC38083.1| signal peptidase-like protein [Streptomyces coelicolor]
          Length = 148

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD+L+++   +V  GD ++++       +V K    RRG    ++  
Sbjct: 25  EVTGPSMVPTLHHGDVLLVHWGARVRPGDVVVLRHPFQQDLLVVKRAAERRGAGWWVLGD 84

Query: 199 NC----CYPVDTVEMSDIEWIARI 218
           N           V   D+  + R+
Sbjct: 85  NAFAGGDSTDYGVVPQDL-VLGRV 107


>gi|332363707|gb|EGJ41487.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 168

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 37/145 (25%), Gaps = 5/145 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL              ++    Y+    S GF+             +       P 
Sbjct: 57  TTDYLLLEDSDKAELKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPA 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152
                +            ++    +
Sbjct: 117 KFTALVWLTFFLLIASAMAINKALK 141


>gi|317403733|gb|EFV84218.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 194

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 56/196 (28%), Gaps = 27/196 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       + + +  + +  + T    A   G+  ++ +K +   +      P+ +++ K
Sbjct: 1   MQGNKQSVLAQRLRALRQARDWTLKQAALATGVSASTLSKIENGLL-----SPTYDNLIK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEK-------------KEKEIPLLYFPPSGSGGFFDSG 107
           I A     + +L     +   T  +                +  LL    S         
Sbjct: 56  IAAGLELDVAELFTASDAHMGTGRRSLSRQGEGRQYETPYYDHRLLCTALSHKRMMPFHT 115

Query: 108 VFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVN 166
                +                +Y ++ +    +       P   + G+   ++S     
Sbjct: 116 RVKARSFDEFQDW-SRHGGEEFVYVLEGE---VELYTEFYEPARLKAGESFYIDS----R 167

Query: 167 CGDRLLIKPRTGDIVA 182
            G R++   +   +V 
Sbjct: 168 MGHRVISLSKQDALVL 183


>gi|238922527|ref|YP_002936040.1| hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656]
 gi|238874199|gb|ACR73906.1| Hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656]
          Length = 189

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 51/187 (27%), Gaps = 16/187 (8%)

Query: 1   MTS--FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M+    SH  + E + R+ +   ++   +A + G+  +   + ++         PS   +
Sbjct: 1   MSMDYLSH-NVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTAN-----PSIGVL 54

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            KI +       +L+D P  D       +                F          +   
Sbjct: 55  GKITSGLRIEFQRLIDPPRVDYALISPDDLVPTKELLGQYRVWTCFPYEDSREVEVYRID 114

Query: 119 GVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDR 170
             P       G        +   D     +    +    +G +    +       N GDR
Sbjct: 115 VEPGGVYTSGGHGEKTREYLTVTDGVLTVECHDHVQEIHRGQVYKFETDQPHLYRNDGDR 174

Query: 171 LLIKPRT 177
           +      
Sbjct: 175 VASCMCF 181


>gi|229027735|ref|ZP_04183918.1| transcriptional regulator, XRE [Bacillus cereus AH1272]
 gi|228733571|gb|EEL84372.1| transcriptional regulator, XRE [Bacillus cereus AH1272]
          Length = 102

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  +T   LA+   L  ++    +R       R P   ++ +I    N +
Sbjct: 5  GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58


>gi|206889709|ref|YP_002248181.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741647|gb|ACI20704.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 107

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          KI E I R+ +    +   LA K G+      K ++   +
Sbjct: 2  KIGEIIKRLRKAKGFSQMELAEKIGITYQQLQKYEKGKSK 41


>gi|209883535|ref|YP_002287392.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
 gi|209871731|gb|ACI91527.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
          Length = 202

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 15/167 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I    ++  ++   LA   GL  +  +K +R         PS  +  K+     +T
Sbjct: 23  LGERIRFARQQRGMSLEQLATATGLTKSYLSKVERQLAV-----PSITTALKVSRVFGQT 77

Query: 69  ICQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           + QLL     +       K E+   L     +G      +   P       V  P  +  
Sbjct: 78  VGQLLGESLDESSLCIVRKNERHRFLKNDTHNGYNIEAIASSLPHKRMEPFVMRPPHKFH 137

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
            +  +    ++          +          ++  + +  GD L  
Sbjct: 138 SDRRFTHAGEELIFVLSGQIEIE--------FIDRTVLLEAGDALYF 176


>gi|170745213|ref|YP_001766670.1| XRE family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658814|gb|ACB27868.1| transcriptional regulator, XRE family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 202

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 50/175 (28%), Gaps = 16/175 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I R      L+   LA ++G+  +  +K +R         PST  + ++  A   T
Sbjct: 22  IAEEIRRRRREQGLSLETLAARSGVSRSMISKIERSEAV-----PSTVVLSRLAEALGVT 76

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--GVPEIRSP 126
             +L+              ++  L     +             G   + V   +P   S 
Sbjct: 77  FSRLMAPATEREILLIPASRQPILRD--EASGYLRRCISPVLPGRGIDWVLNTLPPGAST 134

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                  +            +  +  +  +++         GD L  +   G   
Sbjct: 135 GEFTAHRRGVSEYIYVLRGRLRAVIGERAVIM-------ETGDSLYFEADAGHAF 182


>gi|163757480|ref|ZP_02164569.1| transcriptional regulator, XRE family protein [Hoeflea
          phototrophica DFL-43]
 gi|162284982|gb|EDQ35264.1| transcriptional regulator, XRE family protein [Hoeflea
          phototrophica DFL-43]
          Length = 139

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EA+ ++     +T   +A   G+ P   +  +     G+   PS E I +
Sbjct: 1  MTPF-----GEAVRKLRAERGVTQRHMAEALGVSPAYLSALE----HGKRSEPSWEFIQR 51

Query: 61 ILAATNETICQ 71
          ++   N    +
Sbjct: 52 VIGYFNIIWDE 62


>gi|153813159|ref|ZP_01965827.1| hypothetical protein RUMOBE_03568 [Ruminococcus obeum ATCC 29174]
 gi|226322369|ref|ZP_03797887.1| hypothetical protein COPCOM_00137 [Coprococcus comes ATCC 27758]
 gi|317501376|ref|ZP_07959578.1| hypothetical protein HMPREF1026_01522 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088400|ref|ZP_08337316.1| hypothetical protein HMPREF1025_00899 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|149830814|gb|EDM85904.1| hypothetical protein RUMOBE_03568 [Ruminococcus obeum ATCC 29174]
 gi|225209227|gb|EEG91581.1| hypothetical protein COPCOM_00137 [Coprococcus comes ATCC 27758]
 gi|291550452|emb|CBL26714.1| Helix-turn-helix [Ruminococcus torques L2-14]
 gi|316897240|gb|EFV19309.1| hypothetical protein HMPREF1026_01522 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408251|gb|EGG87735.1| hypothetical protein HMPREF1025_00899 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 138

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 4/124 (3%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQ 71
           I  + +  N+T + LA++ G+  +     +     G  R  S  E + +I   +   +  
Sbjct: 4   IKELRKEKNITVAELAKELGISQSMLTNYENG--NGTPRDESIWEKLSQIFGVSKSHVMG 61

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L     +  +T + K                     +    +  ++  + E+    + + 
Sbjct: 62  LTTDIETANKTKQLKVVVDTSQPISIQPKNQTDLDVLIKL-DLIDSEDMEEVSEFLDKLL 120

Query: 132 AIQT 135
           A + 
Sbjct: 121 AQEK 124


>gi|119484521|ref|ZP_01619138.1| hypothetical protein L8106_02347 [Lyngbya sp. PCC 8106]
 gi|119457995|gb|EAW39118.1| hypothetical protein L8106_02347 [Lyngbya sp. PCC 8106]
          Length = 92

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          I  + +R  L+   LA + G+   + N+ +R   +     PS  ++  I     +   +
Sbjct: 16 ILTLRKRLGLSQEKLATQLGVSFQTVNRWERGRTQ-----PSHLALQAIKQKLIDMDHE 69


>gi|152987325|ref|YP_001348762.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962483|gb|ABR84508.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 183

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 39/117 (33%), Gaps = 5/117 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   +  +     LT + LA ++ +     ++ +R         P+   + ++     
Sbjct: 5   ELIARRLSTLRSERRLTLAQLAERSAVSKAMISRIERNES-----SPTASVLGRLAGGLG 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            T+ +LL    +      +++++                +    +G +   V +P  
Sbjct: 60  VTLSELLGNTQAPAAPLCRRDRQEVWEDPASGYRRRQVGARDPHSGCEMVEVEIPAD 116


>gi|53718320|ref|YP_107306.1| putative DNA binding protein [Burkholderia pseudomallei K96243]
 gi|76809610|ref|YP_332306.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|126439864|ref|YP_001057766.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126452578|ref|YP_001065010.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|134279533|ref|ZP_01766245.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305]
 gi|167718185|ref|ZP_02401421.1| DNA-binding protein [Burkholderia pseudomallei DM98]
 gi|167737218|ref|ZP_02409992.1| DNA-binding protein [Burkholderia pseudomallei 14]
 gi|167814348|ref|ZP_02446028.1| DNA-binding protein [Burkholderia pseudomallei 91]
 gi|167822825|ref|ZP_02454296.1| DNA-binding protein [Burkholderia pseudomallei 9]
 gi|167844399|ref|ZP_02469907.1| DNA-binding protein [Burkholderia pseudomallei B7210]
 gi|167892913|ref|ZP_02480315.1| DNA-binding protein [Burkholderia pseudomallei 7894]
 gi|167901398|ref|ZP_02488603.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177]
 gi|167909629|ref|ZP_02496720.1| DNA-binding protein [Burkholderia pseudomallei 112]
 gi|167917643|ref|ZP_02504734.1| DNA-binding protein [Burkholderia pseudomallei BCC215]
 gi|217419891|ref|ZP_03451397.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576]
 gi|237810918|ref|YP_002895369.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|242315333|ref|ZP_04814349.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b]
 gi|254181736|ref|ZP_04888333.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|254187668|ref|ZP_04894180.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196228|ref|ZP_04902652.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|254260280|ref|ZP_04951334.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a]
 gi|254296221|ref|ZP_04963678.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|52208734|emb|CAH34670.1| putative DNA binding protein [Burkholderia pseudomallei K96243]
 gi|76579063|gb|ABA48538.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|126219357|gb|ABN82863.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126226220|gb|ABN89760.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a]
 gi|134248733|gb|EBA48815.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305]
 gi|157806235|gb|EDO83405.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|157935348|gb|EDO91018.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|169652971|gb|EDS85664.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|184212274|gb|EDU09317.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|217397195|gb|EEC37211.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576]
 gi|237504288|gb|ACQ96606.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|242138572|gb|EES24974.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b]
 gi|254218969|gb|EET08353.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a]
          Length = 222

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 6/172 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 36  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 90

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+ + ++      S         P   +++ + +  + + H 
Sbjct: 91  VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHG 150

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              A           + ++     +   L+      V   D+       GD 
Sbjct: 151 APRA-PGTSVNLVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDT 201


>gi|95931307|ref|ZP_01314023.1| transcriptional regulator, XRE family with cupin sensor
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132638|gb|EAT14321.1| transcriptional regulator, XRE family with cupin sensor
           [Desulfuromonas acetoxidans DSM 684]
          Length = 219

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 53/193 (27%), Gaps = 17/193 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  + +   LT   +A + G  P   ++ +   +       S   + +       
Sbjct: 37  NIGAKIKELRKARKLTLQAVATETGFSPALISQIENNNVSPPIATLS--KLARFFDVKIS 94

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIR 124
              +  +             + +  +        G+    +                  R
Sbjct: 95  HFFEEEEEVRRYEVVRTVDRRVVSRVISKAGKGHGYTYEALSVHKLNKKMEPFVVTVSER 154

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
           S    +Y    ++       T+        ++L+ +  I++  GD +             
Sbjct: 155 SDDETMYNHDGEEFLLILNGTA--------EVLLDDERIKLEAGDAVYFDSSMRH----R 202

Query: 185 LISRRGRSIDLMS 197
           L+S  G  + +++
Sbjct: 203 LLSYDGEEVQVLA 215


>gi|322806874|emb|CBZ04444.1| transcriptional regulator, MerR family [Clostridium botulinum
           H04402 065]
          Length = 147

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I R+ E   L  + L+R +G++ +  +  +R   E     P+  ++ K+      T+
Sbjct: 3   GKNIKRIRELKGLGVNELSRLSGVNASYISAMERGEKE----NPTITTLKKLADTLEVTV 58

Query: 70  CQLLDLPFSDGR--TTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            +L+               +    +         G F +     
Sbjct: 59  DELIKEDSITHEKLKEWDNKYTDQIKEESTLYETGEFKTAEAAM 102


>gi|313905625|ref|ZP_07838987.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313469572|gb|EFR64912.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 506

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S K +   +    +   L+   LA   G++ +  +K +          P  E++ +
Sbjct: 1  MKKLSVKLLANTVVSKRKEKKLSQQELADATGINRSMLSKLESRDYI--PSIPQLEALSE 58

Query: 61 ILAATNETIC 70
          +L      + 
Sbjct: 59 VLDFDPSEMY 68


>gi|253680960|ref|ZP_04861763.1| signal peptidase I [Clostridium botulinum D str. 1873]
 gi|253562809|gb|EES92255.1| signal peptidase I [Clostridium botulinum D str. 1873]
          Length = 173

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPR 176
           +P   +    ++       + K   TSM P  + GD ++   ++S   ++ GD ++   +
Sbjct: 12  LPVGIALLLVLFIWNFIGFQVKVPSTSMSPTIKPGDHILITRVHSEKSLHRGDIVVFYSK 71

Query: 177 -TGDIVAKVLISRRGRSIDL 195
                + K L+   G  I +
Sbjct: 72  ENNQTMIKRLMGLPGDKISI 91


>gi|228949839|ref|ZP_04112049.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228809897|gb|EEM56308.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
          Length = 63

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +         T S LA K+G+   + +  +     G  + PS +SI  I  A    +
Sbjct: 4  LHKVKEKRLNKGWTQSKLAEKSGVPQPTISHIEN----GTLKNPSIKSIKNIANALGINL 59

Query: 70 CQ 71
           +
Sbjct: 60 EE 61


>gi|256377105|ref|YP_003100765.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921408|gb|ACU36919.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
           43827]
          Length = 200

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/143 (6%), Positives = 35/143 (24%), Gaps = 3/143 (2%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  +     +T + L+ + G+  ++ ++ +         +     + +      
Sbjct: 10  DAVGPRLRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLL--LARAYDVPL 67

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           + +                    +  +       G      V P          P+    
Sbjct: 68  DDLVGAPRTGDPRIHLKPITRFGMTFVPLSRRPGGVHAFKMVIPAEP-EPLAPAPKTHEG 126

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP 149
              +Y +  +          +LP
Sbjct: 127 LEWLYVLSGRLRLVVGDRDLVLP 149


>gi|295837554|ref|ZP_06824487.1| transcriptional regulator [Streptomyces sp. SPB74]
 gi|197698364|gb|EDY45297.1| transcriptional regulator [Streptomyces sp. SPB74]
          Length = 226

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +  +      +   LAR+A L  ++ ++ +        R  + +S+  +  A + +
Sbjct: 12  VRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQ-----RRLALDSLVTLARALDTS 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + QL++    D  +    +     + +P     G        T    +            
Sbjct: 67  LDQLVETASDDVVSNPVVDGARGQMRWPVKADPGLTVVRQRMTEPPPDNPSKLRAHPGRE 126

Query: 129 GIYAIQTQDTRH 140
            +  +    T  
Sbjct: 127 WLVVLSGTATLL 138


>gi|146306212|ref|YP_001186677.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574413|gb|ABP83945.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp]
          Length = 81

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ +A+     +  L+   LA  AG+D +   K +R       R  +  +I +I +A   
Sbjct: 16 RLGKAVRARRAQQALSQEALADAAGIDRSHMGKIERGE-----RNVTFLNIARIASALGC 70

Query: 68 TICQ 71
              
Sbjct: 71 KPSD 74


>gi|49482579|ref|YP_039803.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257424493|ref|ZP_05600922.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427162|ref|ZP_05603564.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429798|ref|ZP_05606185.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432502|ref|ZP_05608865.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257435404|ref|ZP_05611455.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876]
 gi|282902933|ref|ZP_06310826.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus C160]
 gi|282907332|ref|ZP_06315180.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907675|ref|ZP_06315517.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282912582|ref|ZP_06320378.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282913206|ref|ZP_06320998.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus M899]
 gi|282921645|ref|ZP_06329363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          C427]
 gi|282922833|ref|ZP_06330523.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          C101]
 gi|283959786|ref|ZP_06377227.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus A017934/97]
 gi|293498255|ref|ZP_06666109.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          58-424]
 gi|293509195|ref|ZP_06667913.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809]
 gi|293550459|ref|ZP_06673131.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus M1015]
 gi|295426883|ref|ZP_06819522.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          EMRSA16]
 gi|297588905|ref|ZP_06947546.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          MN8]
 gi|49240708|emb|CAG39369.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|257273511|gb|EEV05613.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276793|gb|EEV08244.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280279|gb|EEV10866.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283381|gb|EEV13513.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257286000|gb|EEV16116.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876]
 gi|282315054|gb|EFB45440.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          C101]
 gi|282316060|gb|EFB46444.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          C427]
 gi|282323306|gb|EFB53625.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus M899]
 gi|282324278|gb|EFB54594.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282328580|gb|EFB58851.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282330231|gb|EFB59752.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282597392|gb|EFC02351.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus C160]
 gi|283789378|gb|EFC28205.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus A017934/97]
 gi|290919506|gb|EFD96582.1| putative transcriptional regulator [Staphylococcus aureus subsp.
          aureus M1015]
 gi|291097186|gb|EFE27444.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          58-424]
 gi|291467947|gb|EFF10455.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809]
 gi|295129335|gb|EFG58962.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          EMRSA16]
 gi|297577416|gb|EFH96129.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          MN8]
 gi|312436536|gb|ADQ75607.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH60]
 gi|315194806|gb|EFU25195.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          CGS00]
          Length = 67

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R  L  + LA++AG+   + +  +R         PS  +  KI    N
Sbjct: 3  NRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNF-----MPSVLTAIKIARIFN 53


>gi|289422857|ref|ZP_06424689.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L]
 gi|289156719|gb|EFD05352.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L]
          Length = 215

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 15/139 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I R+     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 38  DIGEKIKRLRTGKQLTQEELANRCELSKGFISQVENNLT-----SPSIATLIDILDILGT 92

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-----PE 122
            + +      ++  T      +   ++       G+    + P   K +   V     P 
Sbjct: 93  NLKEFFSEDLNEKITF-----KQDDMFEVEDEDLGYTFRWLVPNSQKNDMEPVMVEIMPG 147

Query: 123 IRSPHNGIYAIQTQDTRHK 141
            R      +  +      K
Sbjct: 148 GRYKEEKPHEGEEFGYVIK 166


>gi|226948120|ref|YP_002803211.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226840862|gb|ACO83528.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 384

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 16/215 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +     I + I    +   +T   LA   G+   S +K +         +P    + +
Sbjct: 1   MINLRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSS-----YPDIVLLPE 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    N ++ +LL       +   KK        F         +         ++    
Sbjct: 56  LATYFNISVDELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKYYSCFPF 115

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                     Y+          ++ ++     +  IL+     + +     +    T + 
Sbjct: 116 LLSIIQLLLNYSN-------LIKNDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 168

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +A++ +      I L+  N   P       D+  I
Sbjct: 169 LAEMTLGNSEEVIRLL-DNKLDP---YRGDDVILI 199


>gi|194291408|ref|YP_002007315.1| transcriptional regulator Xre family [Cupriavidus taiwanensis LMG
          19424]
 gi|193225312|emb|CAQ71256.1| putative transcriptional regulator, XRE family [Cupriavidus
          taiwanensis LMG 19424]
          Length = 198

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  A+  + ++  L+   L+R+AG+  +  ++ +R         P+   ++++  A   +
Sbjct: 17 VGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVS 71

Query: 69 ICQL 72
          +   
Sbjct: 72 LTDF 75


>gi|183597291|ref|ZP_02958784.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827]
 gi|188023308|gb|EDU61348.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827]
          Length = 185

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 3/145 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    + KI + +  + +  NL+ + LAR +G+   + +K +        R  + E+I  
Sbjct: 1   MDKKINIKIGQKVRLLRQARNLSLNELARLSGISKAALSKLESGDSN--PRVDTLEAIA- 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I      +    L             ++      F    + G           +   +  
Sbjct: 58  IALRFPLSDLFTLQHEAYPYFVKSAPQQGDYSQQFKFRINMGNISEIWQLNMKRGAIINS 117

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145
           P   S  +    + T     + +D 
Sbjct: 118 PAHMSGTHEHIMLHTGSLMLRLKDE 142


>gi|218897578|ref|YP_002445989.1| putative DNA-binding protein [Bacillus cereus G9842]
 gi|228906186|ref|ZP_04070074.1| transcriptional regulator [Bacillus thuringiensis IBL 200]
 gi|229110034|ref|ZP_04239611.1| transcriptional regulator [Bacillus cereus Rock1-15]
 gi|218543081|gb|ACK95475.1| putative DNA-binding protein [Bacillus cereus G9842]
 gi|228673387|gb|EEL28654.1| transcriptional regulator [Bacillus cereus Rock1-15]
 gi|228853443|gb|EEM98212.1| transcriptional regulator [Bacillus thuringiensis IBL 200]
          Length = 117

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           FSH++    +  + E+ ++T   LA   G+   S             + P T ++ KI 
Sbjct: 1  MFSHER----LKSLIEKKSITQQQLADAIGVSHVSVYNYVEG-----KKAPGTRTLQKIA 51

Query: 63 AAT 65
             
Sbjct: 52 NYL 54


>gi|160937325|ref|ZP_02084687.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439889|gb|EDP17638.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC
          BAA-613]
          Length = 88

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I    +   +    LA   G++  S +K +R        +P+ E++ KI+       
Sbjct: 7  GPNIQTFRKLKGMKQQELADAIGINLQSLSKIERGVY-----YPTFETLEKIMVVLEVAP 61

Query: 70 CQLLDLPFSD 79
           ++L   +  
Sbjct: 62 NEMLSGTWKF 71


>gi|117623739|ref|YP_852652.1| DNA-binding transcriptional regulator HipB [Escherichia coli APEC
          O1]
 gi|218558421|ref|YP_002391334.1| DNA-binding transcriptional regulator HipB [Escherichia coli S88]
 gi|115512863|gb|ABJ00938.1| HipB transcriptional activator [Escherichia coli APEC O1]
 gi|218365190|emb|CAR02910.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|307626964|gb|ADN71268.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          UM146]
 gi|315286221|gb|EFU45657.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 110-3]
 gi|323952534|gb|EGB48406.1| helix-turn-helix protein [Escherichia coli H252]
 gi|323956713|gb|EGB52448.1| helix-turn-helix protein [Escherichia coli H263]
          Length = 88

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +   
Sbjct: 12 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PNNTSLTTFFKILQSLEL 66

Query: 68 TI 69
          ++
Sbjct: 67 SM 68


>gi|222055496|ref|YP_002537858.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221564785|gb|ACM20757.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 117

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 26/88 (29%)

Query: 3  SFSHKKI-------------WEAID----------RMAERHNLTPSGLARKAGLDPTSFN 39
            +HK++             ++A+D          +      +T + +A + G   ++  
Sbjct: 1  MLTHKELKDRALQRADVKTEYDALDEEFRFLDEFLKARAAAGVTQAEVAERIGTTQSAIA 60

Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNE 67
          + +     G    PS  ++ K   A   
Sbjct: 61 RLESG---GGKHSPSIATLQKYAHALGC 85


>gi|91210760|ref|YP_540746.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          UTI89]
 gi|237705488|ref|ZP_04535969.1| HipB transcriptional activator [Escherichia sp. 3_2_53FAA]
 gi|91072334|gb|ABE07215.1| HipB transcriptional activator [Escherichia coli UTI89]
 gi|226900245|gb|EEH86504.1| HipB transcriptional activator [Escherichia sp. 3_2_53FAA]
 gi|294489456|gb|ADE88212.1| transcriptional regulator HipB [Escherichia coli IHE3034]
          Length = 94

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +   
Sbjct: 18 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PNNTSLTTFFKILQSLEL 72

Query: 68 TI 69
          ++
Sbjct: 73 SM 74


>gi|330467774|ref|YP_004405517.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328810745|gb|AEB44917.1| transcriptional regulator, XRE family protein [Verrucosispora
          maris AB-18-032]
          Length = 178

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  + ++H++T   LA  A + P   ++ +    +     PS  ++ K+    + +
Sbjct: 2  LGDRLRDLRQQHSMTLRQLATAADVSPALLSQIENGATD-----PSLSTLRKLAQVFDTS 56

Query: 69 ICQLLDLPF 77
          I +L   P 
Sbjct: 57 IAELFSEPE 65


>gi|326781392|ref|ZP_08240657.1| helix-turn-helix domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326661725|gb|EGE46571.1| helix-turn-helix domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 203

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/132 (9%), Positives = 39/132 (29%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  +      +   LA +A +  ++ ++ +        R  + + +  +  A + +
Sbjct: 12  VRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENG-----RRRLALDQLVTLARALDTS 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + QL++    D  +    +     L +P     G        T    +            
Sbjct: 67  LDQLVETASDDIVSNPTVDGAHGQLRWPIKAEPGMTVIRQRVTEPPPDNPARLRAHPGRE 126

Query: 129 GIYAIQTQDTRH 140
            +  +       
Sbjct: 127 WLVVLSGTAILL 138


>gi|307299363|ref|ZP_07579164.1| transcriptional regulator, XRE family [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915159|gb|EFN45545.1| transcriptional regulator, XRE family [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 183

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 7/141 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT      I   +  + +   ++   LA  +G+  +  ++ +   +      PS  ++ K
Sbjct: 1   MTEL--DNIGNKLRSLRQARKISIKKLADTSGVSSSLISQIEHGKV-----SPSLNTLKK 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           IL A  ET+  L+    S+       ++E  +      G      S    + + + +   
Sbjct: 54  ILNAMGETVISLVQQNSSENTMKGLIKREDRMTVTVAPGLYYEVLSAPNKSYSMFISYLS 113

Query: 121 PEIRSPHNGIYAIQTQDTRHK 141
           P+  +    I+         K
Sbjct: 114 PDAGTEDFFIHEGIESGIMLK 134


>gi|297246885|ref|ZP_06930668.1| Gp5 [Staphylococcus aureus A8796]
 gi|304379057|ref|ZP_07361804.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
 gi|297176279|gb|EFH35563.1| Gp5 [Staphylococcus aureus A8796]
 gi|304342292|gb|EFM08184.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
          Length = 84

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +D   +R   T S  A K G+ P+++N  +      + R      I K L 
Sbjct: 10 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRDAF--RIAKTLD 58


>gi|291518638|emb|CBK73859.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4]
          Length = 114

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I ++ E   +T    +   G+  ++ +  KR     +   PS + I  I    + +
Sbjct: 3  ISERIFKLMEEKGMTQLEFSAGTGIAQSTISDWKR-----KKTNPSADKIMVISDVLDVS 57

Query: 69 ICQ 71
            +
Sbjct: 58 PFE 60


>gi|289748952|ref|ZP_06508330.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689539|gb|EFD56968.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 341

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 48  VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 102

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 103 ATFFASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHP 144


>gi|257867362|ref|ZP_05647015.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           casseliflavus EC30]
 gi|257873693|ref|ZP_05653346.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           casseliflavus EC10]
 gi|257801418|gb|EEV30348.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           casseliflavus EC30]
 gi|257807857|gb|EEV36679.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
           casseliflavus EC10]
          Length = 180

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +  + NLT   L  +  L     ++ +R         PS E+ F IL     
Sbjct: 2   EIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLS-----SPSMETFFTILEVLGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           T  +      +  +   ++E             
Sbjct: 57  TPEEFFREENAQHQVVYREEDSTLYYDEENGYE 89


>gi|227823870|ref|YP_002827843.1| putative transcriptional regulator, XRE family [Sinorhizobium
          fredii NGR234]
 gi|227342872|gb|ACP27090.1| putative transcriptional regulator, XRE family [Sinorhizobium
          fredii NGR234]
          Length = 125

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EA+  +  R  ++   +A   G+ P   +  +     G+   PS + + +
Sbjct: 1  MTPF-----GEAMRELRRRKGVSQKEMAAAIGVSPAYLSALE----HGKRGAPSFDFLQR 51

Query: 61 ILAATNETICQ 71
          +    N    +
Sbjct: 52 VAGYFNVIWDE 62


>gi|291287070|ref|YP_003503886.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884230|gb|ADD67930.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 196

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 43/144 (29%), Gaps = 11/144 (7%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  KI E + ++     LT   +A   G      ++ +   +      P   ++ KI   
Sbjct: 4   TEVKIGERVRKIRNERGLTLQDVANFTGFSKALISQIENNIV-----MPPINTLSKIAKV 58

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---- 120
            N            + +     +K+     F      G+    +    + ++ + +    
Sbjct: 59  LNV-KMTYFFEEEINQKDYYVVKKDQKKFIFREGVKHGYMYEELAKVKS-FDYLDLLLVT 116

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
            +       +++ +  +     + 
Sbjct: 117 IKPDKRDEKLFSHEGYEYMFVVEG 140


>gi|215429287|ref|ZP_03427206.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis EAS054]
 gi|219556284|ref|ZP_03535360.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis T17]
 gi|260199463|ref|ZP_05766954.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis T46]
 gi|289441846|ref|ZP_06431590.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289568383|ref|ZP_06448610.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289752496|ref|ZP_06511874.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289414765|gb|EFD12005.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289542136|gb|EFD45785.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289693083|gb|EFD60512.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
          Length = 474

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHP 102


>gi|297199962|ref|ZP_06917359.1| regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|197710434|gb|EDY54468.1| regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 281

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           +   +++   + R+ ER  LT      + G+   + ++ +    EG  +WP+ +++ +
Sbjct: 5  PTTRRRQLGADLRRLRERKGLTLEEAGARVGISKATLSRYE--TKEGTVKWPAVDALCR 61


>gi|168179538|ref|ZP_02614202.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182669756|gb|EDT81732.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
          Length = 136

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +     R +L  + LA+   +   + +  +        R P T ++ K+    N 
Sbjct: 3  EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57

Query: 68 TICQLLDLPFSDGR 81
          ++  +L    +   
Sbjct: 58 SVDYILGRSENRNG 71


>gi|153939491|ref|YP_001392322.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|168181734|ref|ZP_02616398.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|170757018|ref|YP_001782679.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|226950473|ref|YP_002805564.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|237796500|ref|YP_002864052.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|152935387|gb|ABS40885.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|169122230|gb|ACA46066.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|182675110|gb|EDT87071.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|226841145|gb|ACO83811.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|229263475|gb|ACQ54508.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|295320315|gb|ADG00693.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 136

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +     R +L  + LA+   +   + +  +        R P T ++ K+    N 
Sbjct: 3  EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57

Query: 68 TICQLLDLPFSDGR 81
          ++  +L    +   
Sbjct: 58 SVDYILGRSENRNG 71


>gi|148380996|ref|YP_001255537.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932705|ref|YP_001385366.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936433|ref|YP_001388773.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148290480|emb|CAL84608.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          3502]
 gi|152928749|gb|ABS34249.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932347|gb|ABS37846.1| DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 136

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +     R +L  + LA+   +   + +  +        R P T ++ K+    N 
Sbjct: 3  EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57

Query: 68 TICQLLDLPFSDGR 81
          ++  +L    +   
Sbjct: 58 SVDYILGRSENRNG 71


>gi|323702873|ref|ZP_08114531.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
 gi|323532131|gb|EGB22012.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
          Length = 132

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +K I + I    E+  L+    A   GL      + +R       R  S   + KI+   
Sbjct: 9  NKTIGQRIREEREKLGLSREEFAEIIGLSNYYVGQLERGE-----RQMSLPVLVKIVNCL 63

Query: 66 NETICQLLDLPFSDGRTTEKKEK 88
          + ++  L+            + +
Sbjct: 64 HVSLDYLIFGKDYQNAGNVNESQ 86


>gi|320332978|ref|YP_004169689.1| XRE family transcriptional regulator [Deinococcus maricopensis
          DSM 21211]
 gi|319754267|gb|ADV66024.1| transcriptional regulator, XRE family [Deinococcus maricopensis
          DSM 21211]
          Length = 73

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I  + ++   T S LA +  +   + N  +    + 
Sbjct: 10 IRALRKQRGWTQSDLAEQLDVSRQTINAIETGKYDP 45


>gi|284097787|ref|ZP_06385776.1| prophage repressor [Candidatus Poribacteria sp. WGA-A3]
 gi|283830687|gb|EFC34808.1| prophage repressor [Candidatus Poribacteria sp. WGA-A3]
          Length = 130

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          M + +     E I    E   L+ + +A+   +  ++ N+ ++   +
Sbjct: 1  MNTLT-----ERIRSAREEAGLSQADVAKALRISASAVNQWEQGLTK 42


>gi|260185332|ref|ZP_05762806.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446007|ref|ZP_06435751.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289418965|gb|EFD16166.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
          Length = 474

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102


>gi|215409982|ref|ZP_03418790.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215444567|ref|ZP_03431319.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis T85]
 gi|289756539|ref|ZP_06515917.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|294995970|ref|ZP_06801661.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis 210]
 gi|298523942|ref|ZP_07011351.1| transcriptional regulatory protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|289712103|gb|EFD76115.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|298493736|gb|EFI29030.1| transcriptional regulatory protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902291|gb|EGE49224.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
          Length = 474

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102


>gi|215402217|ref|ZP_03414398.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis 02_1987]
 gi|289744162|ref|ZP_06503540.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|289684690|gb|EFD52178.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
          Length = 474

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102


>gi|188587144|ref|YP_001918689.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179351831|gb|ACB86101.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 116

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S +K+ E +      +NLT   L+ + G++     + ++         PS   + K
Sbjct: 1  MKKLSTEKLAETVKFKRNENNLTQEELSEQTGINRVMIGRIEKQDFI-----PSINQLEK 55

Query: 61 ILAATNETICQ 71
          +  A    I  
Sbjct: 56 LADALEFEITD 66


>gi|226196720|ref|ZP_03792300.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931251|gb|EEH27258.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 218

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 6/172 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 32  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+ + ++      S         P   +++ + +  + + H 
Sbjct: 87  VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHG 146

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              A           + ++     +   L+      V   D+       GD 
Sbjct: 147 APRA-PGTSVNLVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDT 197


>gi|50085608|ref|YP_047118.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531584|emb|CAG69296.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 198

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 37/141 (26%), Gaps = 9/141 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I R  +   L  S +A+ AG+     +K +   +       S E++ ++       
Sbjct: 14  IGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVST-----SLETLSRLCDVLGIP 68

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD----SGVFPTGNKWNTVGVPEIR 124
           +  L              +    +         G           P  N    +   +  
Sbjct: 69  MSTLFSQYDQQESHAMLVKSGDGMEVVRRGTEKGHTYRLLTHSRGPRKNFEAYLVSMDDA 128

Query: 125 SPHNGIYAIQTQDTRHKTQDT 145
           S     +A    +  +  +  
Sbjct: 129 SEEFPTFAHPGTEMLYLVEGE 149


>gi|15607606|ref|NP_214979.1| transcriptional regulatory protein [Mycobacterium tuberculosis
           H37Rv]
 gi|15839854|ref|NP_334891.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|148660231|ref|YP_001281754.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148821663|ref|YP_001286417.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167970715|ref|ZP_02552992.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Ra]
 gi|253797392|ref|YP_003030393.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254230812|ref|ZP_04924139.1| hypothetical protein TBCG_00456 [Mycobacterium tuberculosis C]
 gi|254363429|ref|ZP_04979475.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549412|ref|ZP_05139859.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|289552715|ref|ZP_06441925.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|297632949|ref|ZP_06950729.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297729924|ref|ZP_06959042.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|306774562|ref|ZP_07412899.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306779310|ref|ZP_07417647.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306783100|ref|ZP_07421422.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306787468|ref|ZP_07425790.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306792019|ref|ZP_07430321.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306796205|ref|ZP_07434507.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306802063|ref|ZP_07438731.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306806274|ref|ZP_07442942.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306966470|ref|ZP_07479131.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|306970666|ref|ZP_07483327.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307078390|ref|ZP_07487560.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307082949|ref|ZP_07492062.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|313657253|ref|ZP_07814133.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|81669529|sp|O53750|Y465_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator
           Rv0465c/MT0481
 gi|2909541|emb|CAA17420.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13879988|gb|AAK44705.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|124599871|gb|EAY58881.1| hypothetical protein TBCG_00456 [Mycobacterium tuberculosis C]
 gi|134148943|gb|EBA40988.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504383|gb|ABQ72192.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148720190|gb|ABR04815.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|253318895|gb|ACT23498.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289437347|gb|EFD19840.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|308216911|gb|EFO76310.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308327755|gb|EFP16606.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308332117|gb|EFP20968.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308335845|gb|EFP24696.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308339508|gb|EFP28359.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308343374|gb|EFP32225.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308347283|gb|EFP36134.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308351213|gb|EFP40064.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308355866|gb|EFP44717.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308359787|gb|EFP48638.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308363727|gb|EFP52578.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308367383|gb|EFP56234.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323721139|gb|EGB30201.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|328457178|gb|AEB02601.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 474

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102


>gi|329925525|ref|ZP_08280399.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
 gi|328939808|gb|EGG36148.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
          Length = 68

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +K++ + I    +   LT   LA ++G+        +R       R    + + +I    
Sbjct: 3  NKQLAQRIRAFRKLKGLTQQELAERSGISLAVLGAIERGN-----RRAEEQMLAQIADVL 57

Query: 66 NETICQ 71
            T+ +
Sbjct: 58 EITLQE 63


>gi|315038706|ref|YP_004032274.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL
          1112]
 gi|312276839|gb|ADQ59479.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL
          1112]
          Length = 135

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  ++ S LA+  G+  ++ ++ +          P  + + KI  A N +
Sbjct: 1  MNRIREIRKKQGISQSKLAQLTGIPTSTLSEFENG-----LHDPGEDRLRKIAQALNVS 54


>gi|301066917|ref|YP_003788940.1| XRE family transcriptional regulator [Lactobacillus casei str.
           Zhang]
 gi|300439324|gb|ADK19090.1| Transcriptional regulator, xre family [Lactobacillus casei str.
           Zhang]
          Length = 344

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I        LT   LA K G+   + +K ++        +P    +  +       
Sbjct: 3   IDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVS-----YPDITLLPALARILGTD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           +  LL    +      +   E  +     +G     
Sbjct: 58  VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93


>gi|293610665|ref|ZP_06692965.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827009|gb|EFF85374.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 183

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 17/157 (10%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T   H  +   I  + +  +L+   LA  AG+   +    +   +       S   +  I
Sbjct: 6   TVLQH--VGTNIRSLRDERDLSQQDLADLAGVSRRTIAALETGQVN-----ISLAKLDSI 58

Query: 62  LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            A        ++  P               + +E +  LL   PS S           G 
Sbjct: 59  AAVLGVDFKTIVSAPEHKEHAVVNALAWQGKDEESKATLLASVPSRSQVELWIWSLAVG- 117

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
             + V   +       IY ++ +     T    ++P 
Sbjct: 118 -ESYVAEADADGWQEIIYVLEGELIIQFTDSKKIIPA 153


>gi|239629798|ref|ZP_04672829.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527410|gb|EEQ66411.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 344

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I        LT   LA K G+   + +K ++        +P    +  +       
Sbjct: 3   IDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVS-----YPDITLLPALARILGTD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           +  LL    +      +   E  +     +G     
Sbjct: 58  VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93


>gi|160899167|ref|YP_001564749.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364751|gb|ABX36364.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 63

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I  +  +   + + LA   G+   + N  +    +     P   +I ++  
Sbjct: 5  IRELRAQRGWSQAALADLLGVSRQTVNAIETGRYD--PSLPLAFAIARVFE 53


>gi|83746380|ref|ZP_00943432.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551]
 gi|207744667|ref|YP_002261059.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609]
 gi|83726921|gb|EAP74047.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551]
 gi|206596074|emb|CAQ63001.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609]
          Length = 209

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +++I   +  +      T   LA + G+  +  +  +R         P+   + K+ A  
Sbjct: 17 NERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAA-----SPTAAVLDKLAAGL 71

Query: 66 NET 68
            +
Sbjct: 72 GVS 74


>gi|116495345|ref|YP_807079.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334]
 gi|116105495|gb|ABJ70637.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC
           334]
          Length = 344

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I        LT   LA K G+   + +K ++        +P    +  +       
Sbjct: 3   IDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVS-----YPDITLLPALARILGTD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           +  LL    +      +   E  +     +G     
Sbjct: 58  VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93


>gi|325662744|ref|ZP_08151338.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325470981|gb|EGC74209.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 194

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I E I  + ++       LA   G    +  K +   IE          + K+L  T
Sbjct: 9  IGERIKTLRKKRGYNQKDLATLLGKSLRTIQKYESGEIEVSI--AMVNELAKVLDTT 63


>gi|315122908|ref|YP_004063397.1| hypothetical protein CKC_05820 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496310|gb|ADR52909.1| hypothetical protein CKC_05820 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 210

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E I +  +   +T        GL  ++ +  +R         P  ++  KI  A  +
Sbjct: 95  EIGERIKKFRKEEGMTLKEFGEWVGLPVSTVSTYERGIS-----APEIKTALKIKRALGK 149

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
            +  +            +   +    +     S G
Sbjct: 150 PLDWIYFGDEEIVPKKSRLRAKQSNFHQNQRKSQG 184


>gi|300904120|ref|ZP_07121994.1| transcriptional repressor DicA [Escherichia coli MS 84-1]
 gi|301307000|ref|ZP_07213040.1| transcriptional repressor DicA [Escherichia coli MS 124-1]
 gi|300403913|gb|EFJ87451.1| transcriptional repressor DicA [Escherichia coli MS 84-1]
 gi|300837790|gb|EFK65550.1| transcriptional repressor DicA [Escherichia coli MS 124-1]
 gi|315253246|gb|EFU33214.1| transcriptional repressor DicA [Escherichia coli MS 85-1]
          Length = 135

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +   + + +    +   LT    AR AG+   + ++ +R   +     P  + +F 
Sbjct: 1   MDTRT---LGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQ-----PVGKRLFA 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +  A   +   L+           ++      L          FD+        
Sbjct: 53  LADALKCSPTWLMFGDEDKAPVPAQELHVETELTPSHKELIELFDALPSSEQEA 106


>gi|268610635|ref|ZP_06144362.1| XRE family transcriptional regulator [Ruminococcus flavefaciens
          FD-1]
          Length = 223

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I R+     +T   LA +  +   + +K +R         P    +  +       
Sbjct: 32 IKRLRTELGMTQKQLAERINVSDKAVSKWERGNG-----CPDVSLLSALADVFGTD 82


>gi|260556875|ref|ZP_05829092.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260409481|gb|EEX02782.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 210

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 17/144 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +   H  +   I  + + H+L+   LA +AG+   +    +   +       S   +  I
Sbjct: 33  SVLQH--VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 85

Query: 62  LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            A        ++  P               EK+E +   L   PS S     +     G 
Sbjct: 86  AAVLGVDFRTIVSAPEHKEHALVNALAWQGEKEESKATFLASVPSRSQIELWTWSLAVG- 144

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137
             + V   +       IY ++ + 
Sbjct: 145 -ESYVAEADAEGWQELIYVLEGEL 167


>gi|258440879|ref|ZP_05690714.1| transcription regulator [Staphylococcus aureus A8115]
 gi|282894661|ref|ZP_06302888.1| hypothetical protein SGAG_02008 [Staphylococcus aureus A8117]
 gi|257852393|gb|EEV76314.1| transcription regulator [Staphylococcus aureus A8115]
 gi|282762938|gb|EFC03071.1| hypothetical protein SGAG_02008 [Staphylococcus aureus A8117]
          Length = 77

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          +D   +R   T S  A K G+ P+++N  +      + R 
Sbjct: 3  LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRD 42


>gi|256396029|ref|YP_003117593.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362255|gb|ACU75752.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM
           44928]
          Length = 1334

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 32/143 (22%), Gaps = 5/143 (3%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  +   A+  + E   LT    A+  GL  ++             R+P       +   
Sbjct: 20  TRAEFGRALTELREAAGLTIRDAAKGLGLPSSTIGGYLTGRHLPPVRFPDL-----LPDF 74

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
                           R   +  +         S S     +G  P    W         
Sbjct: 75  LRMCGVSDPSEIEEWVRALWRIRRASGQRATAGSQSPYRGLAGFQPEHAAWFYGRESLTD 134

Query: 125 SPHNGIYAIQTQDTRHKTQDTSM 147
                I A +  D        S 
Sbjct: 135 LLIGRILADEPPDGPVLVVGASG 157


>gi|222086392|ref|YP_002544926.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221723840|gb|ACM26996.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 200

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+I   I    E    + + LA ++ +     +K +R         P+   + K+  A  
Sbjct: 21  KRIGTRIRIERESRGWSLTELAERSAVSRAMIHKIERGDS-----SPTATLLGKLSGAFG 75

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLL 93
            ++  L+           +K  +   +
Sbjct: 76  LSMSTLMARAEMHQGRLLRKGDQPVWV 102


>gi|213966374|ref|ZP_03394554.1| transcriptional regulator, HTH_3 family [Corynebacterium
          amycolatum SK46]
 gi|213950971|gb|EEB62373.1| transcriptional regulator, HTH_3 family [Corynebacterium
          amycolatum SK46]
          Length = 87

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I+  I  +   H L+ + LA++  ++P +    +R      + +PS +  F+I A  
Sbjct: 11 IFNRISVLRAEHGLSRAELAKQVEVNPQTIGALERG-----DHYPSLDLAFRICAVF 62


>gi|212697015|ref|ZP_03305143.1| hypothetical protein ANHYDRO_01580 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675985|gb|EEB35592.1| hypothetical protein ANHYDRO_01580 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 489

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 17/181 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S +K+ + +    +  N +   L+   G++ T  ++ +          PS + +  
Sbjct: 1   MKKLSVEKLADFVSTYRKSKNFSQRNLSDLTGINRTMISRIESCDYV-----PSIDQLQA 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +       I  L        ++  K   +   +    +G  G   + +    N+   V +
Sbjct: 56  LAEVLGFDIVDLF--VEEGKKSFMKNIDKKYKIAVAGTGYVGLSIATLLAQNNQVTAVDI 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD---ILILNSAIQVNCGDRLLIKPRT 177
            + +                  QD  +    R+ D      L+        D ++I   T
Sbjct: 114 VKEKVDLINERKSP-------IQDDYIEKYLREKDLDLTATLDGEAAYRDADFVVIAAPT 166

Query: 178 G 178
            
Sbjct: 167 N 167


>gi|168210926|ref|ZP_02636551.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|209947633|ref|YP_002291140.1| putative LexA repressor [Clostridium perfringens]
 gi|170711066|gb|EDT23248.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|209910424|dbj|BAG75513.1| putative LexA repressor [Clostridium perfringens]
          Length = 379

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSI 193
                 + +  SM  L++  +++I         GD ++       +      I ++   +
Sbjct: 269 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIASLSENNEATC-KKIHKKKDKL 327

Query: 194 DLMSLNCC-YPVDTVEM-SDIEWIARILWAS 222
           +L   +   Y +   +  SDI  I  ++  S
Sbjct: 328 ELHPCSTLPYEIQYYDKNSDINIIG-VVLGS 357



 Score = 37.8 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +    + + ++    A++  +  ++ +  +R   E     P   ++ K+    N 
Sbjct: 9  RLATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSE-----PPIYTLVKMSEVMNC 63

Query: 68 TICQ 71
          +I +
Sbjct: 64 SIDE 67


>gi|167957582|ref|ZP_02544656.1| UDP-N-acetylglucosamine transferase [candidate division TM7
          single-cell isolate TM7c]
          Length = 508

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +KI   I         T + LA       ++ N+ ++ G        S E I +I    
Sbjct: 8  EKIGNLIQENRIMRGWTQAQLAEALDTSQSAINRIEKGGQN-----ISLEMIARIGEVL 61


>gi|167835510|ref|ZP_02462393.1| DNA-binding protein [Burkholderia thailandensis MSMB43]
          Length = 222

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 6/172 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 36  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 90

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+ + ++      S         P   +++ + +  + +   
Sbjct: 91  VAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEPG 150

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
              A           + ++         L+      V   D+       GD 
Sbjct: 151 APRA-PGTSVNLVVSEGTLEVSIHDRRQLLATGDAIVFDADQPYALRNPGDT 201


>gi|149278961|ref|ZP_01885095.1| hypothetical protein PBAL39_03749 [Pedobacter sp. BAL39]
 gi|149230240|gb|EDM35625.1| hypothetical protein PBAL39_03749 [Pedobacter sp. BAL39]
          Length = 232

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 56/220 (25%), Gaps = 34/220 (15%)

Query: 1   MTSFSHKK---IWEAIDRMAERHNLTPSGLA----RKAGLDPTSFNKSKRFGIEGRNRWP 53
           M + SH +   I   +       +LT +       R  G + +S    KR   +   R  
Sbjct: 5   MKT-SHPQQIMIGPRLKEARLLRDLTLAEFYTPITRHIG-NCSSIENGKRIIGKRLTR-- 60

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
                             L  L    G    K   +   L         FF+  +     
Sbjct: 61  ---------DIAEYHHINLKFLTTGTGEIFTKPIDDRQHLLPATQHGVPFFNVDLADATF 111

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
               V         N                 SM P +  G+I+I+    ++   D +  
Sbjct: 112 GTTQVFQETAEYYVNYKPFNDCNAY-LPIYGESMHPKFSSGEIIIV---KEILNRDIVQW 167

Query: 174 ---------KPRTGDIVAKVLISRRG-RSIDLMSLNCCYP 203
                    +        K+L        I L SLN  + 
Sbjct: 168 GEAYLIVTDEQANNMTTVKLLFEHEDQGKIILRSLNPEFK 207


>gi|328949375|ref|YP_004366712.1| hypothetical protein Tresu_2553 [Treponema succinifaciens DSM
          2489]
 gi|328449699|gb|AEB15415.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 93

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  +     ++   LA K G+   S +  +   I      PS E + KI      +
Sbjct: 4  EQIRELRNIRGISQIQLANKLGVTKQSVSNWENDNI-----LPSIEMLVKIANFFEVS 56


>gi|310815538|ref|YP_003963502.1| transcriptional regulator, XRE family with cupin sensor
           [Ketogulonicigenium vulgare Y25]
 gi|308754273|gb|ADO42202.1| transcriptional regulator, XRE family with cupin sensor
           [Ketogulonicigenium vulgare Y25]
          Length = 214

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I  + +++ LT   L+ +AGL     ++ +R         PS  S+ ++       I
Sbjct: 30  GSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAV-----PSLGSLARLAQVLQVDI 84

Query: 70  CQLLDLPFSDGRTTEKKEK 88
              +  P      +    +
Sbjct: 85  DHFISTPRPSDSLSRAAGR 103


>gi|332654275|ref|ZP_08420019.1| transcriptional regulator, Cro/CI family [Ruminococcaceae
          bacterium D16]
 gi|332517361|gb|EGJ46966.1| transcriptional regulator, Cro/CI family [Ruminococcaceae
          bacterium D16]
          Length = 394

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 6/68 (8%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + ++  + + +  +   +T   LA + G+   + ++ +         +P   ++  +  
Sbjct: 1  MNEQEFAQRLRQYRKNKGMTQQELADQLGVSNKTVSRWESGS------YPDVTTLVALAR 54

Query: 64 ATNETICQ 71
              T+ +
Sbjct: 55 VLGVTVDE 62


>gi|257883596|ref|ZP_05663249.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257819254|gb|EEV46582.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
          Length = 383

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +  I   I  + +  N+T +  A   GL  +     +        +    E+I + L 
Sbjct: 124 LKNLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKT--LEAIARALD 181

Query: 64  AT 65
             
Sbjct: 182 VP 183


>gi|164687400|ref|ZP_02211428.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM
           16795]
 gi|164603174|gb|EDQ96639.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM
           16795]
          Length = 179

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 44/216 (20%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  M     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2   DIGSKIKSMRMEKQLTQEELANRCELSKGFISQLENNLT-----SPSIATLIDILEILGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            + +  +    +  T +K++  E               +S          T+  P  +  
Sbjct: 57  NLREFFNEIDPERITFKKEDMFETEDEELKYHLKWLIPNSQKNMMEPIIITL-YPGGQYK 115

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
               +  + ++  +      +L         + +   +V  G+    KPR         I
Sbjct: 116 EEKPH--EGEEFGYVVAGNILLH--------LGDRVNKVKKGESFYFKPRMNH-----YI 160

Query: 187 SRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
           S  G++                       A+++W S
Sbjct: 161 SNPGKT----------------------TAKVIWVS 174


>gi|116072332|ref|ZP_01469599.1| possible peptidase S26 family protein [Synechococcus sp. BL107]
 gi|116064854|gb|EAU70613.1| possible peptidase S26 family protein [Synechococcus sp. BL107]
          Length = 105

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 138 TRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKP--RTGDIVAKVLISRRGR 191
              K +  SM P     D +++            G  ++     R G  + K L S    
Sbjct: 1   MLLKVEGESMRPTLNPDDRVLVRRTSADTDTPPLGAVVVAWHPLRPGLRLIKRLQSVGHD 60

Query: 192 SIDLMSLNCC 201
            + L+  N  
Sbjct: 61  GMILLGDNPS 70


>gi|108797614|ref|YP_637811.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866701|ref|YP_936653.1| hypothetical protein Mkms_0647 [Mycobacterium sp. KMS]
 gi|108768033|gb|ABG06755.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119692790|gb|ABL89863.1| protein of unknown function DUF955 [Mycobacterium sp. KMS]
          Length = 475

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    +      ++      L      S         PT
Sbjct: 61  ATFFASQDDTRLVAELREVAMDRELGVEVDVSEIADMVAAHPT 103


>gi|57641201|ref|YP_183679.1| transcription regulator [Thermococcus kodakarensis KOD1]
 gi|57159525|dbj|BAD85455.1| predicted transcription regulator, containing CBS domains
           [Thermococcus kodakarensis KOD1]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ +   +T   LA+KAG+      K +   ++     P   ++ +IL A  E     
Sbjct: 13  IRKIRKELGITQEELAKKAGVTQAYIAKLEAGKVD-----PRLSTLNRILQALLECKKAQ 67

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
                         +    +       +          +GN
Sbjct: 68  PKARDVMSSPVISVKPYDSVEKVIRLMNEHNISQIPVISGN 108


>gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
          [Kineococcus radiotolerans SRS30216]
 gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
          [Kineococcus radiotolerans SRS30216]
          Length = 516

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          +I   I    +   LT   LA + G   ++ ++ ++ 
Sbjct: 17 QIGALIRDARKHRGLTQVQLAERLGTSQSAVHRMEQG 53


>gi|326562075|gb|EGE12403.1| putative prophage repressor [Moraxella catarrhalis 7169]
          Length = 196

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 54/203 (26%), Gaps = 46/203 (22%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTE 84
           + +A+K  ++P +           R R  + + I  +          +     S      
Sbjct: 25  TEIAKKLQVEPPTVTNW-------RWRGIAHDKIIPLAQLYGLDAHYIATGERSIQNQVN 77

Query: 85  KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
               +   +    + S     +     G  W                            +
Sbjct: 78  N---QHGYIGGSVNQSVVNNYANQLTEGEDW------------------------LTIIN 110

Query: 145 TSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI--------DLM 196
             M P +  GD + +++  +   G+ + +         K+L   R +           L+
Sbjct: 111 NDMFPAFAIGDCVRIDTKQEAQAGNYVYVDCEGK----KMLRKYRPKGYDENGTPYTHLV 166

Query: 197 SLNCCYPVDTVEMSDIEWIARIL 219
           + N  YPV          +  ++
Sbjct: 167 AENDDYPVIDSRHQAFTVLGVVM 189


>gi|322807345|emb|CBZ04919.1| repressor (CI-like) [Bacteriophage A118] [Clostridium botulinum
          H04402 065]
          Length = 136

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +     R +L  + LA+   +   + +  +        R P T ++ K+    N 
Sbjct: 3  EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGN-----RIPDTLTLSKLADFFNC 57

Query: 68 TICQLLDLPFSDGR 81
          ++  +L    +   
Sbjct: 58 SVDYILGRSENRNG 71


>gi|322386543|ref|ZP_08060170.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC
           51100]
 gi|321269462|gb|EFX52395.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC
           51100]
          Length = 169

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 43/167 (25%), Gaps = 9/167 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 3   KLADKLFELRKEKGWSQERLAEQISVSRQSISKWESGQA-----LPELEKIVELSKIFQV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL              ++    Y+    S GF+             +       P 
Sbjct: 58  TTDYLLLEDSDKPEIKPILSEDEKDRYYKEVKSYGFWQVLYIFISALAIFLFFAGSSFPA 117

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKG----DILILNSAIQVNCGDR 170
                +            ++    +      D +I         GD+
Sbjct: 118 TFTALVWLSFFLLIASAMAINKALKIKKKYLDKVIDLDEASKKEGDK 164


>gi|303241951|ref|ZP_07328444.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302590506|gb|EFL60261.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 103

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + ++  L+ + L+   G+     ++ +        + PS E + KI+ A N 
Sbjct: 5  DLGKRIKELRKQSGLSTTKLSNLTGISSGYISELENN-----LKSPSAEILLKIIDALNI 59

Query: 68 T 68
          T
Sbjct: 60 T 60


>gi|257068924|ref|YP_003155179.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Brachybacterium faecium DSM 4810]
 gi|256559742|gb|ACU85589.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Brachybacterium faecium DSM 4810]
          Length = 517

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   I    +   LT + LA + G   ++ N+ ++          + E++ KI +A 
Sbjct: 16 RIGTLIRDARQHSGLTQAQLASELGTSQSAVNRIEKGQQN-----LTLETLSKIGSAL 68


>gi|322420390|ref|YP_004199613.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320126777|gb|ADW14337.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 106

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 3  SFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            + K++    I  + +   L+   LA K G+DP   ++ +     G    PS +++  I
Sbjct: 1  MQTAKQLLGLRIREVRKARQLSQEKLAEKVGVDPKQISRIE-----GGKSAPSLDTLEAI 55

Query: 62 LAATNETICQLLDLPF 77
                 I  L D   
Sbjct: 56 AKHLQVEIKDLFDFQH 71


>gi|229120644|ref|ZP_04249888.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201]
 gi|301052670|ref|YP_003790881.1| putative transcriptional regulator [Bacillus anthracis CI]
 gi|228662817|gb|EEL18413.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201]
 gi|300374839|gb|ADK03743.1| possible transcriptional regulator; possible DNA-binding protein
          [Bacillus cereus biovar anthracis str. CI]
          Length = 149

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + S LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|291288151|ref|YP_003504967.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290885311|gb|ADD69011.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 273

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 30/123 (24%), Gaps = 12/123 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL------ 62
           +   I ++ +R  +    + R  GL P+  +          +R P  E++ +I       
Sbjct: 2   LGNKIRKLIKRKGIKQVDVCRAVGLSPSRLSNYLSG-----SREPDLETLSRIARFLEVK 56

Query: 63  -AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                            +     ++++                       G       + 
Sbjct: 57  LDYFAYGDNIKNTKETGENIKKMREKRGFTKNDLAAVAKMDVQALTRIELGYGEFERDLI 116

Query: 122 EIR 124
           E  
Sbjct: 117 ENL 119



 Score = 42.1 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 59/207 (28%), Gaps = 23/207 (11%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+  E I +M E+   T + LA  A +D  +  + +    E        + I  + +   
Sbjct: 70  KETGENIKKMREKRGFTKNDLAAVAKMDVQALTRIELGYGE-----FERDLIENLASCLT 124

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++  L+               E        + +         P            +   
Sbjct: 125 CSVADLIGAEEGY-------SFEQGAQQSVAAENEAVVYEPSVP---GIE----ISLADV 170

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVL 185
            +G   ++         D    P   + DIL +   ++ +     +++   T     K +
Sbjct: 171 EDGRCEMEKGAFWAYVNDGRFAPKVNETDILYIEKVSLDLIDDRDVVLYFDTD--SLKFM 228

Query: 186 I-SRRGRSIDLMSLNCCYPVDTVEMSD 211
                G +I +          T +  D
Sbjct: 229 RAFLSGGNIIMAPEVGAGAPVTYQKDD 255


>gi|240143885|ref|ZP_04742486.1| DNA-binding protein [Roseburia intestinalis L1-82]
 gi|257204077|gb|EEV02362.1| DNA-binding protein [Roseburia intestinalis L1-82]
          Length = 298

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I    ++  +T   LA K G    S +K +R         P      ++      
Sbjct: 5  KIGSYIAEKRKKLGMTQKQLAEKLGKSDKSVSKWERGIC-----LPDVSVYLELCEILGI 59

Query: 68 TICQL 72
          ++ + 
Sbjct: 60 SLNEF 64


>gi|49081786|gb|AAT50293.1| PA1884 [synthetic construct]
          Length = 184

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 5/117 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   +  + +   LT + LA +  +     ++ +R         P+   + ++     
Sbjct: 5   ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLAGGLG 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             + +LL    +      ++ ++                +    +G +   V +P  
Sbjct: 60  VALSELLGDAQAPAEPLCRRAQQEVWEDPASGYRRRQVGARDPRSGCEMVEVEIPAN 116


>gi|81427764|ref|YP_394763.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78609405|emb|CAI54451.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 68

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  +    N T + LA + G+   +    +++        PS E  FKI       
Sbjct: 2  IQNRIKVLRAERNWTQADLAERTGISRQAVISIEKYKYT-----PSLELAFKIAQVFGVE 56

Query: 69 ICQLLDLPF 77
          I  +     
Sbjct: 57 ITTVFSPEE 65


>gi|53718202|ref|YP_107188.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|167737073|ref|ZP_02409847.1| putative DNA-binding protein [Burkholderia pseudomallei 14]
 gi|167814187|ref|ZP_02445867.1| putative DNA-binding protein [Burkholderia pseudomallei 91]
 gi|52208616|emb|CAH34552.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
          Length = 125

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + ++  LT + +A +  +D  + ++ +R  +      P   ++ ++ A    +
Sbjct: 9  IGRNIASVRKQRGLTQAAVAEQIDVDAETVSRFERGAV-----MPGVATLERLCAVLECS 63

Query: 69 ICQ 71
             
Sbjct: 64 WMD 66


>gi|38232718|ref|NP_938485.1| putative regulatory protein [Corynebacterium diphtheriae NCTC
          13129]
 gi|38198976|emb|CAE48592.1| Putative regulatory protein [Corynebacterium diphtheriae]
          Length = 99

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I+  I  +    +++ + LA    ++P +    +R      +  PS +   +I    N
Sbjct: 23 IYNRIRVLRTERDMSRAQLAELVDVNPQTIGALERG-----DHSPSLDLALRICDVFN 75


>gi|319954805|ref|YP_004166072.1| helix-turn-helix domain protein [Cellulophaga algicola DSM 14237]
 gi|319423465|gb|ADV50574.1| helix-turn-helix domain protein [Cellulophaga algicola DSM 14237]
          Length = 66

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + +   ++ + LA K G    + N+  R       R PS E +FKI    N   
Sbjct: 1  MNRIKEVLKDKGISQTWLADKMGKSYNTINEYARN-----KRQPSIEVLFKIAEILNMEA 55

Query: 70 CQLLDLPF 77
           +L++   
Sbjct: 56 KELIEKRD 63


>gi|295402732|ref|ZP_06812673.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294975231|gb|EFG50868.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 115

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             H  I + I  + ++  ++ +  A +  + P   +  +     G+        + K+ 
Sbjct: 1  MLEH--IGQRIRTLRKQKGISLNAFAERLNVSPAYLSNLE----TGKTDTIQLSLLEKLQ 54

Query: 63 AAT 65
             
Sbjct: 55 EEL 57


>gi|283833052|ref|ZP_06352793.1| DNA-binding protein [Citrobacter youngae ATCC 29220]
 gi|291070671|gb|EFE08780.1| DNA-binding protein [Citrobacter youngae ATCC 29220]
          Length = 178

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 46/166 (27%), Gaps = 27/166 (16%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  +   + S LA + G+      + +R         P+  +++KI    N  
Sbjct: 8   LATTLRTLRHQREWSLSRLAEETGVSKAMLGQIERNES-----SPTVATLWKIATGLNVP 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPL---LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
               +  P SDG  T   +++  +   L+           S +   G    +        
Sbjct: 63  FSTFISPPESDGTPTFDPQQQAMVVTPLFPWDPQLCFDHFSILLAPGAISESTPHESGVI 122

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            H                           D+ I      +  G+ +
Sbjct: 123 EH-----------VVVINGLL--------DMCIDERWRTIKAGEGV 149


>gi|295689938|ref|YP_003593631.1| XRE family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431841|gb|ADG11013.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC
           21756]
          Length = 112

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 7/111 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M     +++   +    +R  LT S LA +    P +    +          P+ E++ +
Sbjct: 1   MAKV-EEQLGAVVKHHRKRLGLTQSQLAERIDRQPGTVQSLEAGNA------PTFETLVR 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           + +  +  +  L  +                +       +           
Sbjct: 54  LASVFDIHLRDLFGIGDYAIEEGRSDPLVSIVQRLSGLSAEELQWVDELLA 104


>gi|223986619|ref|ZP_03636613.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM
          12042]
 gi|223961414|gb|EEF65932.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM
          12042]
          Length = 400

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I ++ +  NLT   LA +  +   + ++ +R        +P    + K+  +   T 
Sbjct: 7  GKRIAQLRKARNLTQQQLADQLNVTNRAISRWERGEG-----YPEITLLPKLADSLGVTT 61

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYF 95
           ++L             ++   ++  
Sbjct: 62 DEILGHRTRKQPGMRFAQQPQVIIGI 87


>gi|212640460|ref|YP_002316980.1| putative xre family transcriptional regulator [Anoxybacillus
          flavithermus WK1]
 gi|212561940|gb|ACJ34995.1| Predicted transcriptional regulator, xre family [Anoxybacillus
          flavithermus WK1]
          Length = 162

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             H  I E I R+   H+ T   LA++  +  +  +K +   +      P  +SI  + 
Sbjct: 26 MLQH--IGEQIRRLRNAHDWTQEQLAQRLNVSRSKVSKWENGEV-----LPDLQSIIDMS 78

Query: 63 AATNET 68
               +
Sbjct: 79 DLFRVS 84


>gi|223939954|ref|ZP_03631821.1| transcriptional regulator, XRE family [bacterium Ellin514]
 gi|223891368|gb|EEF57862.1| transcriptional regulator, XRE family [bacterium Ellin514]
          Length = 203

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + ++      +   LA  +G+  +  ++ +R         P+    F+I  A   ++ 
Sbjct: 28  RRLKQLRAERGWSLDSLANASGVSRSMISQVERNQAN-----PTLAVAFRIARAFGMSLA 82

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +L++ P +       +  +    Y   +    
Sbjct: 83  ELVETPEAMSSVLVIRASDHEYHYRSDNDCQI 114


>gi|94314004|ref|YP_587213.1| XRE family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357856|gb|ABF11944.1| transcriptional regulator, XRE family with cupin sensor domain
           [Cupriavidus metallidurans CH34]
          Length = 251

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 14/183 (7%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +   +   + +    +    T + LA  +G+  T+ ++++R  +         ++   I 
Sbjct: 15  TLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQL-----ALGYDNFAAIG 69

Query: 63  AATNETICQLLDLPFSDGRTTEKKE---KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            A    + ++           +          ++Y   S +  F  +             
Sbjct: 70  KALQMDMGEMFAGAGETAAPFQGPIVTRANQGVVYTGQSIAYEFLCTEAAGKQMSPTVAT 129

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           V         ++A    +         +   +  G+ + L        GD L    R G 
Sbjct: 130 VHARHITGPEVFASHPGEEFIYVLSGEVEVHFANGEFVRLAR------GDSLYFDARLGH 183

Query: 180 IVA 182
              
Sbjct: 184 AYI 186


>gi|325697266|gb|EGD39152.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
           SK160]
          Length = 167

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 36/145 (24%), Gaps = 5/145 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL              ++    Y+    S  F+             +       P 
Sbjct: 57  TTDYLLLEESDKPEINPVLSEDEKNRYYKEVKSYSFWQVLYIFVSALAIFLFFAGSSFPA 116

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYR 152
                +            ++    +
Sbjct: 117 KFTALVWLSFFLLIASAMAINKALK 141


>gi|294497869|ref|YP_003561569.1| putative transcriptional regulator SinR [Bacillus megaterium QM
          B1551]
 gi|294347806|gb|ADE68135.1| probable transcriptional regulator SinR [Bacillus megaterium QM
          B1551]
          Length = 111

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  +  +   + + LA +A +  +  +  ++         PS + + KI ++ + T
Sbjct: 2  IGEKIKNLRLKKGYSITRLAEEANISKSYLSHLEKGLNN----NPSLQMLDKIASSLHTT 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          I +L++   S    T K    +  L    
Sbjct: 58 IDELIEGDISCPALTSKPALNLEWLQLIE 86


>gi|293400018|ref|ZP_06644164.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306418|gb|EFE47661.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 108

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I    ++ N+T   LA+K G    +  + +   I         ++I  IL  T   
Sbjct: 4  IGERIRTARKKQNMTLDELAKKVGTSKQTIQRYETGIINNIPSD-KIKAIAAILCTTPAF 62

Query: 69 ICQL 72
          +   
Sbjct: 63 LTGW 66


>gi|257422027|ref|ZP_05599017.1| predicted protein [Enterococcus faecalis X98]
 gi|257163851|gb|EEU93811.1| predicted protein [Enterococcus faecalis X98]
 gi|315157055|gb|EFU01072.1| helix-turn-helix protein [Enterococcus faecalis TX0043]
          Length = 174

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 5/102 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +K I   I +  +  N+T   LA + G+ P++ +             PS   I +I    
Sbjct: 7   NKIIATNIKKYLKESNITQKKLAEEIGISPSTMSDYMNLRSN-----PSHGVIQRIADYF 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                 +      +   +  +     L               
Sbjct: 62  KIKKSDIDTTYKENSDPSSLESIYNILEPERQKIVYETAKEQ 103


>gi|225026540|ref|ZP_03715732.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353]
 gi|224956154|gb|EEG37363.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353]
          Length = 177

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + I    E    +   LA  +G++  +  K +        R P  E + KI AA  
Sbjct: 2  VGKKIRAYREFRGFSQIQLAELSGINVGTIRKYELGI-----RNPKPEQLEKIAAALG 54


>gi|254419025|ref|ZP_05032749.1| hypothetical protein BBAL3_1335 [Brevundimonas sp. BAL3]
 gi|196185202|gb|EDX80178.1| hypothetical protein BBAL3_1335 [Brevundimonas sp. BAL3]
          Length = 194

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 63/211 (29%), Gaps = 34/211 (16%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + EA+  +  R  L+ +    +  +    +   +     G  R      +   L AT   
Sbjct: 13  LGEALAALRRRRGLSQAEAGARLDMTSQGWGLYESGRRPGLFRPDVQRRLTGALDAT--- 69

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                             E    L+    +       +G+   G  ++  G P +   H 
Sbjct: 70  -----------------PEALALLVSGAQTPHVDPAATGLESRGRGFD--GPPPVVVKH- 109

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
                       K +D ++ P    G IL     +    G   +I+ + GD+  ++    
Sbjct: 110 -----------LKVRDDALSPWAEPGVILEYQPDLWPRGGQGCVIEMKDGDLRPRLFDRS 158

Query: 189 RGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
               + +         + ++   +  I+ ++
Sbjct: 159 EDDRLHVRGAGALDRAEVIDRQSVARISAVI 189


>gi|261403945|ref|YP_003240186.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261280408|gb|ACX62379.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
          Length = 68

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +K++ + I    +   LT   LA ++G+        +R       R    + + +I    
Sbjct: 3  NKQLAQRIRAFRKLKGLTQQELAERSGISLAVLGAIERGN-----RRAEEQMLAQIADVL 57

Query: 66 NETICQ 71
            T+ +
Sbjct: 58 EITLQE 63


>gi|182438465|ref|YP_001826184.1| hypothetical protein SGR_4672 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178466981|dbj|BAG21501.1| hypothetical protein containing a helix-turn-helix DNA-binding
          domain [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 708

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +       + R  ++  ++ + LA++ GL   + +             P  E+I K
Sbjct: 2  MTLDTGMDFGPWLARQLKQSGMSQADLAQRIGLTRAAVSAWITGRAT-----PREETINK 56

Query: 61 ILAATNET 68
          I  A    
Sbjct: 57 IAEALGTD 64


>gi|160942938|ref|ZP_02090177.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445839|gb|EDP22842.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium
          prausnitzii M21/2]
          Length = 85

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +       ++T   LA  AG+   + N  ++             SI KIL  T + +  
Sbjct: 27 LKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCR--SICKILDKTLDELFW 83


>gi|159898022|ref|YP_001544269.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159891061|gb|ABX04141.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 71

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +      + + LA+  G+   + N  +    +     PS    FKI       I 
Sbjct: 3  NRLRVLRAEREWSQADLAQALGVSRQTINALETGKYD-----PSLPLAFKIADLFELAIE 57

Query: 71 QLLDLPFSDGRTT 83
          Q+ + P +D  T 
Sbjct: 58 QIFERPSADQATE 70


>gi|27381826|ref|NP_773355.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354995|dbj|BAC51980.1| blr6715 [Bradyrhizobium japonicum USDA 110]
          Length = 210

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          +++ E +  + +R  L+   +A K GL     ++ +R       R     SI 
Sbjct: 24 QRLGETVRLLRQRAGLSIQDVANKTGLSNGMISQLERARAMPSIRTLRLLSIA 76


>gi|148263053|ref|YP_001229759.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4]
 gi|146396553|gb|ABQ25186.1| transcriptional regulator, XRE family [Geobacter uraniireducens
           Rf4]
          Length = 181

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 14/137 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E + R+   ++LT   LA +A L     ++ +          PS  ++  I+     
Sbjct: 2   KIGERLKRLRMINSLTQEELASRADLTKGYISQLENDAT-----SPSIATLKDIIDVFGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEI--------PLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++ +       +     K  +           +    P       D  +           
Sbjct: 57  SMQEFFSEVTDEDIVFGKDARVQATDDDDKIKVELLVPGAQNREMDPVLVTLDPGEEMDE 116

Query: 120 VPEIRSPHNGIYAIQTQ 136
            P         Y +  +
Sbjct: 117 QPF-HEGEEFGYVLLGK 132


>gi|331652877|ref|ZP_08353882.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli M718]
 gi|331048975|gb|EGI21047.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli M718]
          Length = 94

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S  ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +
Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 69

Query: 65 TNETI 69
             ++
Sbjct: 70 LELSM 74


>gi|331647041|ref|ZP_08348135.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli M605]
 gi|331043824|gb|EGI15960.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli M605]
          Length = 94

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S  ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +
Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 69

Query: 65 TNETI 69
             ++
Sbjct: 70 LELSM 74


>gi|328882155|emb|CCA55394.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712]
          Length = 254

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 35/139 (25%), Gaps = 12/139 (8%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           +  +  LT + LA +AG+   + ++ +  G       P+   + ++  A +  +      
Sbjct: 42  LRTKLGLTQTALAERAGMKQPAISRIEGGGTV-----PTLPLLRRLADALDADLNISFTP 96

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ- 134
             +        E     L    +                 +        +   G   +  
Sbjct: 97  RNTPAEAEVPAEVARG-LTVAEAAEESVEPEITEAVEQ--DEPLFRSTMAWLEGSGQVDM 153

Query: 135 ---TQDTRHKTQDTSMLPL 150
               +          + P 
Sbjct: 154 GSLPEACLVYGAGELVAPT 172


>gi|325693715|gb|EGD35634.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK150]
 gi|332364198|gb|EGJ41974.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK355]
          Length = 205

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA K G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKVRGISQEGLAEKLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82


>gi|320195544|gb|EFW70169.1| HipB protein [Escherichia coli WV_060327]
          Length = 88

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S  ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +
Sbjct: 9  SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 63

Query: 65 TNETI 69
             ++
Sbjct: 64 LELSM 68


>gi|293414862|ref|ZP_06657505.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          B185]
 gi|291432510|gb|EFF05489.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          B185]
          Length = 94

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S  ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +
Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 69

Query: 65 TNETI 69
             ++
Sbjct: 70 LELSM 74


>gi|281178626|dbj|BAI54956.1| transcriptional repressor [Escherichia coli SE15]
 gi|330911363|gb|EGH39873.1| HipB protein [Escherichia coli AA86]
          Length = 88

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S  ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +
Sbjct: 9  SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 63

Query: 65 TNETI 69
             ++
Sbjct: 64 LELSM 68


>gi|269216039|ref|ZP_06159893.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
 gi|269130298|gb|EEZ61376.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
          Length = 139

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + ++  ++   LA + G+   S +K +     G    P  +   K+      +
Sbjct: 3  LADKIIMLRKKAGMSQEQLAERLGVSRQSVSKWE-----GSQSMPDMDKAVKLADLFGLS 57


>gi|227886098|ref|ZP_04003903.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          83972]
 gi|300978872|ref|ZP_07174391.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 200-1]
 gi|300989682|ref|ZP_07178955.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 45-1]
 gi|301050227|ref|ZP_07197119.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 185-1]
 gi|306813489|ref|ZP_07447679.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          NC101]
 gi|227837027|gb|EEJ47493.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          83972]
 gi|300298052|gb|EFJ54437.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 185-1]
 gi|300308091|gb|EFJ62611.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 200-1]
 gi|300407298|gb|EFJ90836.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 45-1]
 gi|305853234|gb|EFM53674.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          NC101]
 gi|307553520|gb|ADN46295.1| HTH-type transcriptional regulator HipB [Escherichia coli ABU
          83972]
 gi|312946096|gb|ADR26923.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          O83:H1 str. NRG 857C]
 gi|315291825|gb|EFU51177.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 153-1]
 gi|323187177|gb|EFZ72491.1| HTH-type transcriptional regulator hipB [Escherichia coli
          RN587/1]
 gi|324006881|gb|EGB76100.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 57-2]
 gi|324014833|gb|EGB84052.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 60-1]
          Length = 88

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S  ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +
Sbjct: 9  SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 63

Query: 65 TNETI 69
             ++
Sbjct: 64 LELSM 68


>gi|227507976|ref|ZP_03938025.1| XRE family transcriptional regulator [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227192550|gb|EEI72617.1| XRE family transcriptional regulator [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 196

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 5/114 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +    ++++L  + LA K  +   + +  +          P  +++ +I +    
Sbjct: 4   KLIENLKFFRKQNHLNQNQLAIKLNVSRPTISSWETGRTT-----PDIDTLVRIASFYQV 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
            + QLL           K +K I  +         F            + + + 
Sbjct: 59  PVDQLLFTRSHSKGNINKSQKHILGILLMILIIERFTVDAPPAARGWIDILALI 112


>gi|168187848|ref|ZP_02622483.1| transcriptional regulator, MerR family [Clostridium botulinum C
          str. Eklund]
 gi|169294305|gb|EDS76438.1| transcriptional regulator, MerR family [Clostridium botulinum C
          str. Eklund]
          Length = 155

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E I +  +   LT   LA K  +   + +K ++       R P+ E + KI  A + 
Sbjct: 2  NLGEKIKKYRKLFKLTQEELAAKLEISKHTLSKYEQNQ-----RKPNIEMLNKIAKALDV 56

Query: 68 TICQLLDLPF 77
          T+  L++   
Sbjct: 57 TVNDLMEFEE 66


>gi|167817933|ref|ZP_02449613.1| gp48 [Burkholderia pseudomallei 91]
          Length = 105

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            AI    +   LT + +A + G   ++ ++ +      +   PS  ++ K  AA  
Sbjct: 42 LRAILAARQEAGLTQAQVAERMGTTASAVSRLEASLTSEK-HSPSFATLRKYAAACG 97


>gi|218902221|ref|YP_002450055.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820]
 gi|218539083|gb|ACK91481.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820]
          Length = 149

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + S LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|148544368|ref|YP_001271738.1| helix-turn-helix domain-containing protein [Lactobacillus reuteri
          DSM 20016]
 gi|184153734|ref|YP_001842075.1| hypothetical protein LAR_1079 [Lactobacillus reuteri JCM 1112]
 gi|148531402|gb|ABQ83401.1| helix-turn-helix domain protein [Lactobacillus reuteri DSM 20016]
 gi|183225078|dbj|BAG25595.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
          Length = 145

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            + E I ++ E    + + LAR+  ++ T+ NK ++   +
Sbjct: 4  DILREKIIKLREERGWSQAELARRINMNNTALNKVEKGTRK 44


>gi|26247797|ref|NP_753837.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          CFT073]
 gi|110641680|ref|YP_669410.1| DNA-binding transcriptional regulator HipB [Escherichia coli 536]
 gi|191174143|ref|ZP_03035656.1| transcriptional regulator HipB [Escherichia coli F11]
 gi|26108199|gb|AAN80399.1|AE016760_258 Protein hipB [Escherichia coli CFT073]
 gi|110343272|gb|ABG69509.1| HTH-type transcriptional regulator HipB [Escherichia coli 536]
 gi|190905561|gb|EDV65187.1| transcriptional regulator HipB [Escherichia coli F11]
 gi|222033258|emb|CAP75998.1| HTH-type transcriptional regulator hipB [Escherichia coli LF82]
          Length = 94

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S  ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +
Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQS 69

Query: 65 TNETI 69
             ++
Sbjct: 70 LELSM 74


>gi|323968854|gb|EGB64190.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
          Length = 272

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 5/137 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDP---TSFNKSKRFGIEGRNRWPSTESIFKILA 63
             I   I    ER ++T    A   GL      +  + +R     +      +++     
Sbjct: 3   DNIAATIKEKRERLHMTQKEFADALGLSKYGDRTIRRWERGET--KPTGAELKAVIDFPD 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  +       D        +         +                 N    P+ 
Sbjct: 61  TPPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHANYGDFPDG 120

Query: 124 RSPHNGIYAIQTQDTRH 140
                    I   +   
Sbjct: 121 DITKIDEKDIPDHEILV 137


>gi|322830833|ref|YP_004210860.1| mobile mystery protein A [Rahnella sp. Y9602]
 gi|321166034|gb|ADW71733.1| mobile mystery protein A [Rahnella sp. Y9602]
          Length = 155

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  +     ++   LA + GL  +  +  ++  IEG     +  ++ KI    +  +   
Sbjct: 32  IQLLRSALGMSTRSLAERCGLSQSRISLIEKGEIEG---SLTLNTLEKIAEGLDCELVYF 88

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           L           ++++      F    +          T + +  
Sbjct: 89  LQPKQGRTLQELREQQAGKKAKFLNQYTEIHMSLEQQSTSSAFQE 133


>gi|317501379|ref|ZP_07959580.1| hypothetical protein HMPREF1026_01524 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316897219|gb|EFV19289.1| hypothetical protein HMPREF1026_01524 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 84

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQ 71
          I  + +  N+T + LA++ G+  +     +     G  R  S  E + +I   +   +  
Sbjct: 4  IKELRKEKNITVAELAKELGISQSMLTNYENG--NGTPRDESIWEKLSQIFGVSKSHVMG 61

Query: 72 LLDLPF 77
          L     
Sbjct: 62 LTTDIE 67


>gi|296129256|ref|YP_003636506.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
 gi|296021071|gb|ADG74307.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
          Length = 75

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 8  KIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++   I  +      +T + LAR  G+   +    ++         PS E+ F+I  A  
Sbjct: 7  RVTNRIRALRTERGDMTQAELARHLGVTRQTVIAIEQGRY-----SPSLETAFQIARALG 61

Query: 67 ETICQLLDLPF 77
            + ++ D P 
Sbjct: 62 VPLDEVFDYPD 72


>gi|293374855|ref|ZP_06621157.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|325840161|ref|ZP_08166969.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|292646524|gb|EFF64532.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|325490400|gb|EGC92723.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 356

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  + ++  +T   LA   G+   + +K +         +P    +  I    N 
Sbjct: 4  NIGKVIYELRKKAKVTQEQLANAVGVSVPAVSKWENNTS-----YPDITLLPAIARYFNT 58

Query: 68 TICQLLDLPF 77
          +I +L+    
Sbjct: 59 SIDELMSYDM 68


>gi|251778963|ref|ZP_04821883.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243083278|gb|EES49168.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 148

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I R  ER  L+   LA   G+   S ++ +        R PS + +  I    + +
Sbjct: 3  IGANIKRERERKGLSRKQLADSLGVTDVSISRYEN-----EKRTPSIKILESISLRLDVS 57

Query: 69 ICQLLDLPF 77
          I  L     
Sbjct: 58 INDLTTEKE 66


>gi|239939646|ref|ZP_04691583.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|239986130|ref|ZP_04706794.1| DNA-binding protein [Streptomyces roseosporus NRRL 11379]
          Length = 182

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/101 (9%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  +   H  +   LAR++G+  ++ ++ +R  +      P+   + ++      
Sbjct: 4   RLAVRLADLRTEHGWSLDELARRSGVSRSTLSRLERCEV-----SPTATLLGRLCTVYGR 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           T+ +LL    ++        ++                   
Sbjct: 59  TMSRLLMEVEAEPPPLVPAARQTVWRDEAAGFVRRSVSPPH 99


>gi|221194780|ref|ZP_03567837.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626]
 gi|221185684|gb|EEE18074.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626]
          Length = 364

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +KI      + +R+  +   LAR+  +   S +K +          P  + I  + 
Sbjct: 1  MLLSEKIMS----LRKRNGWSQEELARQLNVSRQSVSKWESMAA-----MPDIQKIMAMS 51

Query: 63 AATNETICQLLDLPFSDGRTT 83
               +   LL     D   T
Sbjct: 52 ELFGVSTDYLLKDEMEDLPAT 72


>gi|169830949|ref|YP_001716931.1| XRE family transcriptional regulator [Candidatus Desulforudis
          audaxviator MP104C]
 gi|169637793|gb|ACA59299.1| transcriptional regulator, XRE family [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 83

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I  ++  +  R  LT + LAR+ G+  T++   ++       + PS  +  +I    NE
Sbjct: 3  QIRVSLRSVRLRAGLTQAELARRVGISRTAYTNIEKGH-----KHPSLVTALRIARVLNE 57

Query: 68 TICQ 71
           +  
Sbjct: 58 HVED 61


>gi|196037631|ref|ZP_03104942.1| transcriptional repressor [Bacillus cereus NVH0597-99]
 gi|228913713|ref|ZP_04077339.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228944755|ref|ZP_04107119.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229090075|ref|ZP_04221326.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42]
 gi|196031873|gb|EDX70469.1| transcriptional repressor [Bacillus cereus NVH0597-99]
 gi|228693305|gb|EEL47015.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42]
 gi|228814927|gb|EEM61184.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228845905|gb|EEM90930.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 149

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + S LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|70725257|ref|YP_252171.1| hypothetical protein SH0256 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68445981|dbj|BAE03565.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 134

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             K + E I  + +   ++   LA K  +   S +  +R         P   ++ ++  
Sbjct: 1  MKTKSVGERIRNLRKSKKMSQEKLAEKLNVSRHSISNWERDVS-----SPDIHALLEMTE 55

Query: 64 ATNET 68
              +
Sbjct: 56 LFGVS 60


>gi|32470131|ref|NP_863573.1| DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|462656|sp|P34879|MTS2_SHISO RecName: Full=Modification methylase SsoII; Short=M.SsoII; AltName:
           Full=Cytosine-specific methyltransferase SsoII
 gi|11559818|gb|AAG38101.1|AF300473_2 DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|294244|gb|AAA98279.1| C5-cytosine methylase [Plasmid P4]
          Length = 379

 Score = 45.5 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 5/137 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDP---TSFNKSKRFGIEGRNRWPSTESIFKILA 63
             I   I    ER ++T    A   GL      +  + +R     +      +++     
Sbjct: 3   DNIAATIKEKRERLHMTQKEFADALGLSKYGDRTIRRWERGET--KPTGAELKAVIDFPD 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  +       D        +         +                 N    P+ 
Sbjct: 61  TPPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHANYGDFPDG 120

Query: 124 RSPHNGIYAIQTQDTRH 140
                    I   +   
Sbjct: 121 DITKIDEKDIPDHEILV 137


>gi|229191715|ref|ZP_04318693.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876]
 gi|228591761|gb|EEK49602.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876]
          Length = 277

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + R+ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|118593092|ref|ZP_01550479.1| Transcriptional repressor [Stappia aggregata IAM 12614]
 gi|118434399|gb|EAV41053.1| Transcriptional repressor [Stappia aggregata IAM 12614]
          Length = 313

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 18/170 (10%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  + E+ N +   LA+       + ++ +    E     P  E++  +      ++  +
Sbjct: 3   IKELREKMNWSQGELAKLLSRTQQTVSRWESGATE-----PGIEALRDMAMIFGCSVDDI 57

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY- 131
           L L       + K    I           G + +      ++ +    P   S  + I  
Sbjct: 58  LGLEG--ISPSNKLTVSISHADALAEEFDGCWGNLGLKMRDRKHIKWYPISASQRDEIRD 115

Query: 132 -----AIQTQDTRHKTQDTSMLPLYRK-----GDILILNSAIQVNCGDRL 171
                 +QTQ         +   L           L+     +    D +
Sbjct: 116 ALNGEILQTQVKWFTVTTLNNRALIVNPKAMRRIWLLAEEHDEPENRDFV 165


>gi|2897106|gb|AAC03457.1| repressor [Streptococcus phage TP-J34]
          Length = 121

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 6/97 (6%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +K+    I+ +     ++   LA+  G    ++ +K +          P+   I K+  A
Sbjct: 4   NKQRGSRIESLRASKGISQLELAKMLGYKSDSTISKWESGASI-----PTGTKIVKLAQA 58

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
              T   +L    S+    ++            +   
Sbjct: 59  LGTTTDYILFGDNSENNDGQQIISTDIDEIIENAMMF 95


>gi|303231737|ref|ZP_07318460.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302513686|gb|EFL55705.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 297

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 43/159 (27%), Gaps = 9/159 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ- 71
           I  + + + L+        G+     +  +R   +     P+ E++ KI    N T+ + 
Sbjct: 3   IQNLRKLYKLSQGDFGALLGMTKGQISSYEREVSQ-----PTLETLNKIAQYFNCTLEEL 57

Query: 72  -LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRSPHNG 129
               +           ++E  L      G+   F +            +     R     
Sbjct: 58  TETPIREEFYFKWLLDQEEHTLFVTQELGNQSKFKAQAGVIEIQSDEYITYGFARGLRED 117

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              I   +     +      +    + ++++        
Sbjct: 118 EAPIFAANFLL-LEGDKNNSIINHFEKVVVDLEEVERKN 155


>gi|301386540|ref|ZP_07234958.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
           tomato Max13]
 gi|330879318|gb|EGH13467.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330941035|gb|EGH43955.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 127

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +   L+ + LA   G D    ++ +R         P  E + +I    N  
Sbjct: 18  VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGST-----LPGIEQLIRIATVFNVA 72

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             +LL       RT     ++          S  + +  
Sbjct: 73  PGELLPGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEM 111


>gi|296168067|ref|ZP_06850133.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896874|gb|EFG76502.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 471

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    +      ++      L             G  P 
Sbjct: 61  ATFFASQDDTRLVAELREVTMDRDLDIDVDPGEVAELVGSHPA 103


>gi|284097788|ref|ZP_06385777.1| lambda repressor [Candidatus Poribacteria sp. WGA-A3]
 gi|283830688|gb|EFC34809.1| lambda repressor [Candidatus Poribacteria sp. WGA-A3]
          Length = 128

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +     E I    ++  L+ + +A+   +  ++ N+ ++    G ++    E  F 
Sbjct: 1  MKTLT-----ERIQTARKQAGLSQADVAKALRISASAVNQWEQ----GFSKNIKLEHFFA 51

Query: 61 ILAATNETICQ 71
          + +   +    
Sbjct: 52 LASLLRQDPQW 62


>gi|281492863|ref|YP_003354843.1| phage Cro/CI transcriptional regulator [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376515|gb|ADA66001.1| Phage protein, transcriptional regulator, Cro/CI family
           [Lactococcus lactis subsp. lactis KF147]
          Length = 203

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 2/102 (1%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES--IFKILAATNE 67
            E I    ++  ++   LA   GL   + +  ++          S  S  +         
Sbjct: 1   MERIKIARQKKGISQKELADLLGLTQQAVSYYEKGSRIPDEHILSVISDILNVPTEYLTG 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
                      +  T    E+    +    S +    D    
Sbjct: 61  ETDDPEGWDLWEDATGYTPEQIKKEIKRMKSANHIVGDDKNL 102


>gi|295677629|ref|YP_003606153.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
 gi|295437472|gb|ADG16642.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 235

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 50/194 (25%), Gaps = 10/194 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 34  VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 88

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L    ++G      E+   ++      S                            
Sbjct: 89  VAAFLRRHATNGFEHLPAERSARVVSANGRYSVRPLYPDDESI-AAEFHELRIAPLHTEA 147

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG--DIVAKV-- 184
           GI             D ++         L+      V   D+       G  +  A    
Sbjct: 148 GIRRAPGTTVNLVVSDGTLEVSVHDQRQLLATGDAIVFDADQPHSLRNPGDTEARAFRVT 207

Query: 185 LISRRGRSIDLMSL 198
           L +      ++   
Sbjct: 208 LRAETPPRWEVRPA 221


>gi|126175750|ref|YP_001051899.1| putative prophage repressor [Shewanella baltica OS155]
 gi|125998955|gb|ABN63030.1| putative prophage repressor [Shewanella baltica OS155]
          Length = 135

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 12/123 (9%)

Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDI 156
                 P          P         S    +    +       +  SM       GDI
Sbjct: 1   MRVIPIPARAGITGFESPAAEYTQLGLSLDELLINHPSSTFLAFAEGDSMQGKGIFDGDI 60

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWI 215
           LI++       GD ++      + + K++     R + L S N  +    +    +    
Sbjct: 61  LIIDRHETARYGDVIVASLNR-EFICKIIDI--PRRLLLSS-NPQHQPVIIHEYDEFSIE 116

Query: 216 ARI 218
             I
Sbjct: 117 GVI 119


>gi|116049838|ref|YP_791355.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585059|gb|ABJ11074.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 5/117 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   +  + +   LT + LA +  +     ++ +R         P+   + ++     
Sbjct: 5   ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLAGGLG 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             + +LL    +      ++ ++                +    +G +   V +P  
Sbjct: 60  VALSELLGDAQAPAEPLCRRAQQEVWEDPASGYRRRQVGARDPRSGCEMVEVEIPAN 116


>gi|47565539|ref|ZP_00236580.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|47557529|gb|EAL15856.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E + ++ E    +   +A+K G+   +  K +         +P  +++  +    N 
Sbjct: 2   NLGELLKKLRESKGFSQGDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           T+ +L+       +      ++         G        +      + 
Sbjct: 57  TLDELIKGNQDFKKKIHSDAEDEDFEKGNEFGFYIGCGLLILSAFVDYE 105


>gi|319652413|ref|ZP_08006529.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2]
 gi|317395875|gb|EFV76597.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 36/195 (18%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  + + +    E   L+   +A   G+  T   + +R         P+  +I+KI    
Sbjct: 5   HLILAKNLKAFRENKKLSLEKVAELTGVSKTMIGQIERGES-----SPTITTIWKIANGL 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +   L++ P  D +   KKE +                         +        + 
Sbjct: 60  KISFTSLINHPQPDTQVVLKKEIQTLSEDHGKYR--------------VYPYFPFENDKR 105

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                  I            S  P     + LI+     V  G+  + +    +      
Sbjct: 106 FEVYTVEIDKGGYL------SAEPHIEGTEELIV-----VFDGEITI-RVNNDEYTL--- 150

Query: 186 ISRRGRSIDLMSLNC 200
               G SI   +   
Sbjct: 151 --ESGDSIRFKADRP 163


>gi|307825930|ref|ZP_07656145.1| transcriptional regulator, XRE family [Methylobacter
          tundripaludum SV96]
 gi|307733049|gb|EFO03911.1| transcriptional regulator, XRE family [Methylobacter
          tundripaludum SV96]
          Length = 102

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I + I        LT + +A + G   ++  + +   + G+   PS +++ K  AA  
Sbjct: 38 ILDEILSARREAGLTQAQVADRMGTKASAVARLESALVSGK-HSPSIDTLRKYAAAVG 94


>gi|291485970|dbj|BAI87045.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    +R   + + LA ++G+  +  +K +R         PS + + K+ A     
Sbjct: 2   IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHT----NPSVQFLKKVSATLEVE 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           + +L D   +         +E   ++   +   G     +F
Sbjct: 58  LTELFD-AETMMYEKISGGEEEWRVHLVQAVQAGMEKEELF 97


>gi|266622984|ref|ZP_06115919.1| toxin-antitoxin system, antitoxin component, Xre family
           [Clostridium hathewayi DSM 13479]
 gi|288865257|gb|EFC97555.1| toxin-antitoxin system, antitoxin component, Xre family
           [Clostridium hathewayi DSM 13479]
          Length = 365

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 50/166 (30%), Gaps = 10/166 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I  + +R  +T + LA + G+   + +K +          P   ++  +      + 
Sbjct: 33  GERITYLRKRKKMTQAQLAEQLGISAQAVSKWESGLS-----CPDIMTLVPLSQVLGVST 87

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSPHN 128
            +LL +    G    +    +       S +    +S     G    + +  P       
Sbjct: 88  DELLGVQGGMGAGGFEASGTMEAGEHAESNTEPITESNAEAKGTADGSPIREPNRFKSLL 147

Query: 129 GIYAIQTQDTRHK---TQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            + A +      +       +   + + G    L +      G+ +
Sbjct: 148 VVPAAEDGTRAIREFTVSAGACAAVIQYGSDFGLETEG-YQDGEII 192


>gi|253576835|ref|ZP_04854160.1| helix-turn-helix domain-containing protein [Paenibacillus sp.
          oral taxon 786 str. D14]
 gi|251843702|gb|EES71725.1| helix-turn-helix domain-containing protein [Paenibacillus sp.
          oral taxon 786 str. D14]
          Length = 69

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I    +    T   LA K+G+        +R       R    + + KI      
Sbjct: 5  QLAQRIRAFRKLKGFTQQELAEKSGVSLALLGAVERGN-----RRADDQMLTKIAQCLGI 59

Query: 68 TICQ 71
          ++ +
Sbjct: 60 SLAE 63


>gi|225569728|ref|ZP_03778753.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM
          15053]
 gi|225161198|gb|EEG73817.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM
          15053]
          Length = 114

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + + ++    NL+   LA        +  K +    E     P+ E++  +      
Sbjct: 2  NIVKNLKKLRTERNLSQQQLADMLHTTQQNIYKYENGISE-----PNLETLKNMADHFQT 56

Query: 68 TICQLLDLPFSDGRTTEKKEK 88
          +I  L+       +     E 
Sbjct: 57 SIDYLVGYTSIRHKIEPVSEY 77


>gi|229816663|ref|ZP_04446952.1| hypothetical protein COLINT_03712 [Collinsella intestinalis DSM
          13280]
 gi|229807791|gb|EEP43604.1| hypothetical protein COLINT_03712 [Collinsella intestinalis DSM
          13280]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          + +++ ++I +      LT   LA + G+   +  + +          PS  ++ KI   
Sbjct: 26 TEREVMKSIVKARIAAGLTQKELADRCGMKAANLCRLENGNGN-----PSVATLSKIAHG 80

Query: 65 TN 66
            
Sbjct: 81 LG 82


>gi|321312988|ref|YP_004205275.1| transcriptional regulator [Bacillus subtilis BSn5]
 gi|320019262|gb|ADV94248.1| transcriptional regulator [Bacillus subtilis BSn5]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    +R   + + LA ++G+  +  +K +R         PS + + K+ A     
Sbjct: 2   IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHT----NPSVQFLKKVSATLEVE 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           + +L D   +         +E   ++   +   G     +F
Sbjct: 58  LTELFD-AETMMYEKISGGEEEWRVHLVQAVQAGMEKEELF 97


>gi|295106173|emb|CBL03716.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           + + + +T  GLA + G+   + +K +         +P  + +  +    +  +  L+  
Sbjct: 10  LRQHYGVTQEGLAEQLGVSRQTVSKWEAGTN-----YPEMDKLLALCDLFHTNLDDLMRG 64

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGV 120
                   + +  +  +     S   G  F        +    V V
Sbjct: 65  SVHVANKGDTERYDHHMNRHSLSMVAGVAFILAGVGVQSVIEAVDV 110


>gi|225851327|ref|YP_002731561.1| transcriptional regulator, xre family [Persephonella marina
          EX-H1]
 gi|225645748|gb|ACO03934.1| transcriptional regulator, xre family [Persephonella marina
          EX-H1]
          Length = 159

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 5/81 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I + I ++ +   L+    A K G    +    +        R P   ++  I     
Sbjct: 2  ENIGQRIKQLRKMLGLSQREFAEKIGKSLRAVQNWEYEQ-----RTPDESTLRLISQTFG 56

Query: 67 ETICQLLDLPFSDGRTTEKKE 87
            +  L           + K 
Sbjct: 57 VNLDWLKTGEGEMWVKDQDKS 77


>gi|170743046|ref|YP_001771701.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168197320|gb|ACA19267.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 7/136 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I R+ + +NL+ S LA ++G+  +  ++ +R         P+  +I+++  A + 
Sbjct: 23  QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETN-----PTLATIWRLSQALDV 77

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  + +     +    EK  +    +     G      +G   T        +       
Sbjct: 78  S-IERVLATGDEEPFIEKSSRADTPILVSEDGKVRLAITGWIKTVEWLQWYDLTAEPGGE 136

Query: 128 NGIYA-IQTQDTRHKT 142
               A  +        
Sbjct: 137 LDSDAHQRGSVECLSV 152


>gi|160902864|ref|YP_001568445.1| XRE family transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160360508|gb|ABX32122.1| transcriptional regulator, XRE family [Petrotoga mobilis SJ95]
          Length = 178

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E I  +    N+T   LA ++ L     ++ +R         P+ E++  IL A   
Sbjct: 2   QIGEKIKSLRIMRNMTQEELATRSDLTRGFISQVERDLA-----SPTVENLEMILRALGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
            +        +  +    KE  IP+   P         +   P
Sbjct: 57  DLKDFFSNLENKEKIVFTKEDRIPIYDSPTGVKEELLLTTSEP 99


>gi|126652117|ref|ZP_01724299.1| DNA-binding protein [Bacillus sp. B14905]
 gi|126591025|gb|EAZ85136.1| DNA-binding protein [Bacillus sp. B14905]
          Length = 181

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 43/137 (31%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + +++  +  +LT   LA  AG+ P+  ++ +R         PS +++  +    + 
Sbjct: 5   DIGKKVEKYRKMKDLTNRELAALAGITPSMLSQIERGLAN-----PSIQTLKVLAKTLDV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                     +      +  K   ++    S      D            + VP   S  
Sbjct: 60  PTFTFFMEETNTEALIVRSNKRKKMIVDNLSYELLSPDFTGNLASAI---LTVPPYTSSS 116

Query: 128 NGIYAIQTQDTRHKTQD 144
             +   + ++     + 
Sbjct: 117 EKLLDHRGEEIAVIIEG 133


>gi|114763188|ref|ZP_01442614.1| acetylornithine deacetylase [Pelagibaca bermudensis HTCC2601]
 gi|114544241|gb|EAU47250.1| acetylornithine deacetylase [Roseovarius sp. HTCC2601]
          Length = 88

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          +  AI R+ +    + + LAR AG D    ++ +    E +
Sbjct: 12 LGHAIRRLRKAKGWSQADLARLAGTDARQVSRIETAAHEPK 52


>gi|49479808|ref|YP_035283.1| DNA-binding protein transcriptional regulator [Bacillus
          thuringiensis serovar konkukian str. 97-27]
 gi|49331364|gb|AAT62010.1| possible transcriptional regulator; possible DNA-binding protein
          [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + S LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLSSDEELTQKVIEDSKQLAYPKW 84


>gi|78212416|ref|YP_381195.1| peptidase S26 family protein [Synechococcus sp. CC9605]
 gi|78196875|gb|ABB34640.1| possible peptidase S26 family protein [Synechococcus sp. CC9605]
          Length = 110

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 5/72 (6%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGD--IVAKVLISRR 189
            +    + +  SM P    GD +++           G  ++          + K L    
Sbjct: 6   GRRLLLRIEGRSMQPTLEPGDRVLVRRLGRKTAPCLGSVVVTWHPQRSKLRLIKRLNRLD 65

Query: 190 GRSIDLMSLNCC 201
            R   L+  N  
Sbjct: 66  SRGFWLLGDNPS 77


>gi|26988980|ref|NP_744405.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24983798|gb|AAN67869.1|AE016418_9 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
          Length = 104

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   +  A+ R  +   LT + LA + G DP + ++ +          PS ++I     
Sbjct: 1  MTRSALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYT-----PSIDAIMAFAQ 55

Query: 64 ATNETICQLLDLPF 77
                      P 
Sbjct: 56 VLGVKTKDFFAEPD 69


>gi|25011386|ref|NP_735781.1| hypothetical protein gbs1344 [Streptococcus agalactiae NEM316]
 gi|24412924|emb|CAD47003.1| unknown [Streptococcus agalactiae NEM316]
          Length = 158

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +   H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2  IGDNIKSLRRTHDLTQPEFAKIIGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56

Query: 69 ICQLLDLPFSDGRTT 83
             ++          
Sbjct: 57 YVDIVGEDKMMTPVE 71


>gi|16080491|ref|NP_391318.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311387|ref|ZP_03593234.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315714|ref|ZP_03597519.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320629|ref|ZP_03601923.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324914|ref|ZP_03606208.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|81556692|sp|P71049|SLRR_BACSU RecName: Full=HTH-type transcriptional regulator slrR
 gi|1495278|emb|CAA96488.1| hypothetical protein [Bacillus subtilis]
 gi|1762125|gb|AAB39888.1| putative transcriptional regulator [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|1945689|emb|CAB08022.1| hypothetical protein [Bacillus subtilis]
 gi|2635951|emb|CAB15443.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I    +R   + + LA ++G+  +  +K +R         PS + + K+ A     
Sbjct: 2   IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHT----NPSVQFLKKVSATLEVE 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           + +L D   +         +E   ++   +   G     +F
Sbjct: 58  LTELFD-AETMMYEKISGGEEEWRVHLVQAVQAGMEKEELF 97


>gi|218892158|ref|YP_002441025.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234978|ref|ZP_04928301.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719]
 gi|126166909|gb|EAZ52420.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719]
 gi|218772384|emb|CAW28166.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 36/116 (31%), Gaps = 5/116 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   +  + +   LT + LA +  +     ++ +R         P+   + ++     
Sbjct: 5   ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLAGGLG 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             + +LL           ++ ++                +    +G +   V +P 
Sbjct: 60  VALSELLGDAQVPAEPLCRRAQQEVWEDPVSGYRRRQVGARDPRSGCEMVEVEIPA 115


>gi|327459012|gb|EGF05360.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1057]
          Length = 205

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82


>gi|322418901|ref|YP_004198124.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320125288|gb|ADW12848.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 82

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ ++ E   ++ + LAR AG+ P + ++ +R            E+  KIL A   +
Sbjct: 19 IMNSVKKLREERLMSKAELARLAGVSPITIDRIERGE------DCRMETKRKILLALGFS 72

Query: 69 ICQLLDLPF 77
          +     +  
Sbjct: 73 LSDKNKVFQ 81


>gi|309792138|ref|ZP_07686610.1| peptidase S26B, signal peptidase [Oscillochloris trichoides DG6]
 gi|308225679|gb|EFO79435.1| peptidase S26B, signal peptidase [Oscillochloris trichoides DG6]
          Length = 590

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
              +  + T       SM P+Y +GD++++ +      GD +  +      V   +I R 
Sbjct: 37  PLQLGGKVTMIIVNGNSMEPVYYRGDLVLIRATSSYQIGDIVTYRHPQIGPVIHRIIGRE 96

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           G        +  +        D + I R  W 
Sbjct: 97  GERWIFQGDHNEFID-PYRPVDADLIGRA-WV 126


>gi|302390193|ref|YP_003826014.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
 gi|302200821|gb|ADL08391.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
          Length = 121

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I + I ++  + +LT   L  +A L  +   + +R      ++ PS +++ KI  A N
Sbjct: 8  KNIGKRIRQIRLQRDLTQEELGERANLHYSYIGQVERG-----DKLPSLKTLSKIAKALN 62

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           ++  +L+ P +     + +     L+   
Sbjct: 63 VSLDYVLEDPATYEAQPDTEAAINELVTMV 92


>gi|298292090|ref|YP_003694029.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928601|gb|ADH89410.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I R+ + +NL+ S L+ ++G+  +  ++ +R         P+  +++++  A + 
Sbjct: 23  QLGRTIQRLRKAYNLSLSELSEQSGVAKSIISQIERNETN-----PTLATVWRLSQALDV 77

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +I + +     +         + P+L     G      +G   T         
Sbjct: 78  SIDRFMAATDDEPFVEHLTRADTPIL-LSEDGKCRLTITGWIKTVEWLQWFDF 129


>gi|254555453|ref|YP_003061870.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|254044380|gb|ACT61173.1| transcription regulator [Lactobacillus plantarum JDM1]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  +  +  LT   L  +  L     ++ +          PS E+ F IL     
Sbjct: 2  DIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQS-----SPSMETFFAILEVLGC 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
                       +       +   
Sbjct: 57 APADFFAAEQPTHKVVYHPADQTTY 81


>gi|300766976|ref|ZP_07076889.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|308179456|ref|YP_003923584.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ST-III]
 gi|300495514|gb|EFK30669.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|308044947|gb|ADN97490.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ST-III]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  +  +  LT   L  +  L     ++ +          PS E+ F IL     
Sbjct: 2  DIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQS-----SPSMETFFAILEVLGC 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
                       +       +   
Sbjct: 57 APADFFAAEQPTHKVVYHPADQTTY 81


>gi|225575462|ref|ZP_03784072.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037314|gb|EEG47560.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM
           10507]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 40/148 (27%), Gaps = 12/148 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA----ATN 66
           E I  + + + L+   LA K  +   + ++ +               + K+         
Sbjct: 5   EVISELRKEYGLSQDELAEKVYVTRQAVSRWETGETIPNIETLKL--LSKLFDVSINTLL 62

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +  +L+              KE   ++        +   G F   NK + +        
Sbjct: 63  GSPRKLICQCCGMPLDDSITSKEENGMFNEDYCKWCY-HEGKFRYSNKEDLISYCSEHMA 121

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
                + Q +          +LP  +  
Sbjct: 122 DENWSSEQVRTYM-----EKLLPTLKHW 144


>gi|28377241|ref|NP_784133.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|28270072|emb|CAD62972.1| transcription regulator [Lactobacillus plantarum WCFS1]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  +  +  LT   L  +  L     ++ +          PS E+ F IL     
Sbjct: 2  DIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQS-----SPSMETFFAILEVLGC 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
                       +       +   
Sbjct: 57 APADFFAAEQPTHKVVYHPADQTTY 81


>gi|322375072|ref|ZP_08049586.1| putative helix-turn-helix protein [Streptococcus sp. C300]
 gi|321280572|gb|EFX57611.1| putative helix-turn-helix protein [Streptococcus sp. C300]
          Length = 165

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +  + +    +   LA +  +   S +K +   +      P  E I ++      
Sbjct: 2   KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           T   LL     +  +T    +E    Y+  + S G +     
Sbjct: 57  TTDYLLLDENFEKGSTAVILEEGKDKYYKEAKSYGLWQVIYI 98


>gi|228926172|ref|ZP_04089247.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932427|ref|ZP_04095308.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|254725583|ref|ZP_05187365.1| hypothetical protein BantA1_24526 [Bacillus anthracis str. A1055]
 gi|228827117|gb|EEM72870.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833425|gb|EEM78987.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 5/108 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    E+ N + S LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5   ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +LL       +   +  K++    +       F              +
Sbjct: 60  ELLRSDEELTQKVIEDSKQLAYPKWKVFFDSLFMMGVFLFITKIVVWI 107


>gi|224371035|ref|YP_002605199.1| HsdR3 [Desulfobacterium autotrophicum HRM2]
 gi|223693752|gb|ACN17035.1| HsdR3 [Desulfobacterium autotrophicum HRM2]
          Length = 1076

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 35/146 (23%), Gaps = 27/146 (18%)

Query: 101  GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ--TQDTRHKTQDTSMLPLYRKGDILI 158
               F +     GN     G+P    P   +            +    SM PL   G   +
Sbjct: 926  CVPFYTLKAAAGNFGLDTGLPFNGEPAGWVLIDDTKPDMFVLQVLGKSMEPLIPDGAYCL 985

Query: 159  LNSAIQV---NCG-------DRLLIKPRTGDIVAKVLISRRGR---------SIDLMSLN 199
                  +     G         +           K   S +            I L S+N
Sbjct: 986  FRGGSALGGSRNGRTVLVQSSGIFDPDTESSFTVKRYRSIKKEDPETGWRHSQIFLESVN 1045

Query: 200  CCYPVDTVEM---SDIEWIA---RIL 219
              +    ++     D   I    R+L
Sbjct: 1046 KDFKTIQLDPENKEDFAIIGEFVRVL 1071


>gi|254500786|ref|ZP_05112937.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222436857|gb|EEE43536.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 1  MTSFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M      +++ E +        L  S LAR A LD ++ ++      E   R P+ +++ 
Sbjct: 1  MDKRDRAELFRERLSAALRERELNRSDLARAAELDRSTVSQLL---SEESPRLPNGQALA 57

Query: 60 KILAATNETICQ 71
           I +A   +   
Sbjct: 58 AIASALGVSADW 69


>gi|126348447|emb|CAJ90170.1| putative regulatory protein [Streptomyces ambofaciens ATCC 23877]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 40/148 (27%), Gaps = 11/148 (7%)

Query: 3   SFSHKKIWE----AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
             +   +       + ++ +   +T + L+   G+  ++ ++ +        R PS E +
Sbjct: 1   MTTADDVLAGVGPRLRQVRKEREVTLAALSETTGISVSTLSRLESG-----LRRPSLELL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             I  A    + +L+  P         K  E       P                +    
Sbjct: 56  LPIAQAHQVPLDELVGAPPVGDPRVRAKPIERHGRTHWPLTRQPGGLQAFKVLEPRRKEE 115

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
             P     +  +Y +  +          
Sbjct: 116 PDPRTHEGYEWLYVLSGRLRL--VLGDH 141


>gi|54027227|ref|YP_121469.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54018735|dbj|BAD60105.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 468

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++     L+   LA++  +  +  N+ +        R  +   + KI       
Sbjct: 6   VGARLRQLRTERGLSQVALAQQLEISASYLNQIEHDV-----RPLTVPVLLKISEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    +      ++      L                P+
Sbjct: 61  ATFFSSQDDTRLIAELQEVVMDQELGIEADTQEIAEMVSAHPS 103


>gi|325290127|ref|YP_004266308.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324965528|gb|ADY56307.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 80

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + +  N+T   LA    LD +  NK +     G     S +++ KI AA   +I +L
Sbjct: 8  IKALRKSLNMTQKQLAELVKLDESMINKIENGHSVG-----SVQTLSKIAAALKVSITEL 62

Query: 73 LDLPFSDGRTTEKKEKE 89
          LD P       + ++  
Sbjct: 63 LDDPCFPLENKKPEDDH 79


>gi|282880753|ref|ZP_06289450.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella timonensis CRIS 5C-B1]
 gi|281305374|gb|EFA97437.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella timonensis CRIS 5C-B1]
          Length = 112

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I EAI +     NLT   L  + G+     ++ ++          S  ++ K+  A   
Sbjct: 43 RIGEAIKKARVEQNLTQEELGERIGVKRAQISRLEKGYS------ISIPTMSKVFKALGV 96

Query: 68 T 68
          +
Sbjct: 97 S 97


>gi|260072652|gb|ACX30550.1| hypothetical protein SUP05_FGYC49P140033 [uncultured SUP05
          cluster bacterium]
          Length = 131

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/65 (10%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   I +  +    +   LA + G+  ++ ++ +       +  PS +++ K+    +
Sbjct: 2  ESLAIRIKQSRQAKGFSQKQLAEEIGVSSSAISQYES--TSYFHSEPSIKNLTKLTKVLD 59

Query: 67 ETICQ 71
           +   
Sbjct: 60 VSFEW 64


>gi|258651242|ref|YP_003200398.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258554467|gb|ACV77409.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 504

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          I   +  + +   LT S +A  AG+ P++ +  +    E +    +T
Sbjct: 36 IGRRLRHLRKAAGLTLSDVAEAAGISPSALSLFENGKREAKLSLLTT 82


>gi|254822427|ref|ZP_05227428.1| transcriptional regulator, XRE family protein [Mycobacterium
          intracellulare ATCC 13950]
          Length = 477

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             + R+ E   LT   LAR  GL  +  N+ +     
Sbjct: 10 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRP 47


>gi|222147111|ref|YP_002548068.1| transcriptional regulatory protein [Agrobacterium vitis S4]
 gi|221734101|gb|ACM35064.1| transcriptional regulatory protein [Agrobacterium vitis S4]
          Length = 194

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 14/119 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  +     LT   LA  +G+     ++ +R         P+   + ++ +A  ++
Sbjct: 12  IAARLKAIRTARGLTLDQLADLSGVSRAMISRIERAEA-----SPTATLLARLCSALGQS 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK----WNTVGVPEI 123
           +                                G+    V   G         V +P  
Sbjct: 67  LSIFFAE-----PNHGSPLMRHADQPVWQDPETGYLRRAVSAPGTGARVDVVEVELPPG 120


>gi|215486731|ref|YP_002329162.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          O127:H6 str. E2348/69]
 gi|218689414|ref|YP_002397626.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          ED1a]
 gi|215264803|emb|CAS09187.1| DNA-binding transcriptional regulator [Escherichia coli O127:H6
          str. E2348/69]
 gi|218426978|emb|CAR07847.2| DNA-binding transcriptional regulator [Escherichia coli ED1a]
 gi|315297460|gb|EFU56739.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 16-3]
          Length = 88

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++  A+  + +++  T S LA+K G+   + +  +           S  + FKIL +   
Sbjct: 12 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQSLEL 66

Query: 68 TI 69
          ++
Sbjct: 67 SM 68


>gi|126433238|ref|YP_001068929.1| hypothetical protein Mjls_0627 [Mycobacterium sp. JLS]
 gi|126233038|gb|ABN96438.1| protein of unknown function DUF955 [Mycobacterium sp. JLS]
          Length = 475

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                    +      ++      L      S         PT
Sbjct: 61  ATFFASQDDTRLVAELREVTMDRELGVEVDVSEIADMVAAHPT 103


>gi|66396313|ref|YP_240642.1| ORF054 [Staphylococcus phage 52A]
 gi|62636729|gb|AAX91840.1| ORF054 [Staphylococcus phage 52A]
 gi|116235518|gb|ABJ88853.1| Cro/CI family transcription regulator [Staphylococcus phage 80]
          Length = 92

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K + E ++++ + +N+T   L+   G+  ++ +   +       R    + +       
Sbjct: 7  RKILSENLEQLMKENNITQVELSEAIGVSQSTISNWLKELK--YPRISKVQQLADYFNVP 64

Query: 66 NETICQLLDLPFSDGR 81
             I +   +      
Sbjct: 65 KSRITEERSIHQETIA 80


>gi|116628615|ref|YP_821234.1| XRE family transcriptional regulator [Streptococcus thermophilus
          LMD-9]
 gi|116101892|gb|ABJ67038.1| Transcriptional regulator, xre family [Streptococcus thermophilus
          LMD-9]
          Length = 170

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  +     + R+     ++ + LA   G+   S +  ++        +P+  ++ K
Sbjct: 1  MT-FIIQNFGPNLARLRIEKGVSQTQLAEYLGIGKQSISDYEKQKS-----YPTFANLDK 54

Query: 61 ILAATNETICQ 71
          I    N T  Q
Sbjct: 55 IAEYFNATPTQ 65


>gi|331694466|ref|YP_004330705.1| helix-turn-helix domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326949155|gb|AEA22852.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
          CB1190]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I   I    E   ++   LA+  G+     ++ +R       R PS E + +I     
Sbjct: 27 DDIGSYIRSQRESAQVSLRQLAKVTGVSNPYLSQVERG-----LRKPSAEILQQIAKGLR 81

Query: 67 ET 68
           +
Sbjct: 82 IS 83


>gi|325840453|ref|ZP_08167052.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|325490320|gb|EGC92649.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 120

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 5/98 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I     +H  T   LA K  L   + N  +        R P  +++ ++    N +
Sbjct: 4   IGSKIRVERNKHGWTQVELANKMNLSKQTINNWEHG-----RRIPDIQTLKELSNLFNVS 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  L+                  +       +   F  
Sbjct: 59  LEYLVGESSPAVPENHLVNTVNKIKDTFGDDAVVLFKD 96


>gi|325567313|ref|ZP_08143980.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755]
 gi|325158746|gb|EGC70892.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755]
          Length = 284

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+ F+ +KI + I    +  NLT S LA +  +   + +  +R         P  E + +
Sbjct: 1  MSEFNMRKIGQQIATKRKEKNLTQSNLADQLLVSYQAVSNWERGNS-----LPDIEKLPQ 55

Query: 61 ILAATNETICQ 71
          + A    +I +
Sbjct: 56 LAAILGLSIDE 66


>gi|298248193|ref|ZP_06971998.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
 gi|297550852|gb|EFH84718.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
          Length = 922

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+     +   + +  E    T   LA +  +D  +    +R       R+PS E   +
Sbjct: 1  MTTRRIPNVL--LKQAREEKGWTQRRLALELDVDEKTVQSWERGT-----RFPSLEYRKQ 53

Query: 61 ILAATNETICQ 71
          +     + + Q
Sbjct: 54 LSDLLGKPLEQ 64


>gi|238028581|ref|YP_002912812.1| DNA-binding protein [Burkholderia glumae BGR1]
 gi|237877775|gb|ACR30108.1| DNA-binding protein [Burkholderia glumae BGR1]
          Length = 218

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 6/171 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 32  VGLNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L      G      E+ + ++      S         P   +++ + V  + +   
Sbjct: 87  VAAFLRRHAVLGFEHLPAERAVRVVGSSGRFSSRALYPEGEPAAAEFHELRVAPLHTETG 146

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              A           + ++         L+      V   D+       GD
Sbjct: 147 ARRA-PGTTINLVVSEGTLELAVNDRRQLLATGDAIVFDADQPYTLRNPGD 196


>gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM
          15897]
          Length = 378

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI + I    +R  LT   L    G+   + ++ +          P    +  +    +
Sbjct: 4  KKIGKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNY-----MPDLSLLIPLSETLD 58

Query: 67 ETICQ 71
           ++ +
Sbjct: 59 ISLNE 63


>gi|209808837|ref|YP_002274408.1| Cro/CI family transcriptional regulator [Enterococcus faecium]
 gi|257880760|ref|ZP_05660413.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257892130|ref|ZP_05671783.1| predicted protein [Enterococcus faecium 1,231,410]
 gi|257895014|ref|ZP_05674667.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260562584|ref|ZP_05833092.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68]
 gi|209528674|dbj|BAG74975.1| Cro/CI family transcriptional regulator [Enterococcus faecium]
 gi|257814988|gb|EEV43746.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257828490|gb|EEV55116.1| predicted protein [Enterococcus faecium 1,231,410]
 gi|257831393|gb|EEV58000.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260073094|gb|EEW61441.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68]
          Length = 460

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +  I   I  + +  N+T +  A   GL  +     +        +    E+I + L 
Sbjct: 201 LKNLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKT--LEAIARALD 258

Query: 64  AT 65
             
Sbjct: 259 VP 260


>gi|154501121|ref|ZP_02039159.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC
          29799]
 gi|150269867|gb|EDM97399.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC
          29799]
          Length = 89

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 14/43 (32%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
           +     I  + ++  LT   LA K  +      K +     G
Sbjct: 5  REDYGSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTG 47


>gi|325956992|ref|YP_004292404.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
 gi|325333557|gb|ADZ07465.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
          Length = 122

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M  F+ K +   I  + ++  L    LA++  +   +    +          P ++++  
Sbjct: 1  MKEFNRKILANNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAI-----PGSDTLDI 55

Query: 61 ILAATNET 68
          +    + +
Sbjct: 56 LADFFDVS 63


>gi|295107448|emb|CBL04991.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          + E I R  +   +T + LA   GL   +    +      + 
Sbjct: 3  VGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRAVKP 44


>gi|291526368|emb|CBK91955.1| Predicted transcriptional regulators [Eubacterium rectale DSM
           17629]
 gi|291526813|emb|CBK92399.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 187

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 14/185 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   SH  + E + R+ +   ++   +A + G+  +   + ++         PS   + K
Sbjct: 1   MDYLSH-NVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTAN-----PSIGVLGK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I +       +L+D P  D       +                F          +     
Sbjct: 55  ITSGLRIEFQRLIDPPRVDYALISPDDLVPTKELLGQYRVWTCFPYEDSREVEVYRIDVE 114

Query: 121 PEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRLL 172
           P       G        +   D     +    +    +G +    +       N GDR+ 
Sbjct: 115 PGGVYTSGGHGEKTREYLTVTDGVLTVECHDHVQEIHRGQVYKFETDQPHLYRNDGDRVA 174

Query: 173 IKPRT 177
                
Sbjct: 175 SCMCF 179


>gi|312196273|ref|YP_004016334.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311227609|gb|ADP80464.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 203

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 24/182 (13%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M+      +   +        LT +GLA  +G+     +K +R   +     P+   + K
Sbjct: 1   MSDTLGAALAATVRSARAARGLTVAGLADASGVSRAMISKVERAEAQ-----PTAALLAK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   T+ +L+    S G +   +  E PL   P SG      S    TG +   V +
Sbjct: 56  LSGALGLTLSELIARAES-GPSRLTRHGEQPLWTDPDSGYSRRAVSPPASTGLELVQVEL 114

Query: 121 PE-----------------IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
           P                  I      +  ++  D     Q   +       D + +N   
Sbjct: 115 PAGATVAMPASTYRFIDQQIWVLAGRLRFVEGDDVHELGQGDCLQLG-APADCVYVNPTE 173

Query: 164 QV 165
             
Sbjct: 174 AP 175


>gi|229160095|ref|ZP_04288097.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803]
 gi|228623406|gb|EEK80230.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + +  E+ N + S LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKQEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRGDEELTQKVIEDSKKLAYPKW 84


>gi|215425689|ref|ZP_03423608.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92]
          Length = 299

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHP 102


>gi|158425156|ref|YP_001526448.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158332045|dbj|BAF89530.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 9/134 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +  ++   + +  E  + + + LA ++ +     +K +R         P+ E + +
Sbjct: 1   MDDITG-RLARRLRQEREARSWSLADLAERSNVSRAMISKIERGEA-----SPTAELLNR 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK---WNT 117
           +      T+  +             +               G+    V P G        
Sbjct: 55  LATGFGLTLASIFAEADPGLDPAAPRVARRAEQAEWRDPGTGYLRRNVSPPGAPALEIVE 114

Query: 118 VGVPEIRSPHNGIY 131
           V  P         Y
Sbjct: 115 VQFPSGGRVVFDAY 128


>gi|146300326|ref|YP_001194917.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146154744|gb|ABQ05598.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 131

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 1  MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M++ +  K I   I R+ E  ++    LA   G+   + +  +        R      I 
Sbjct: 1  MSTATKPKHIGRNISRIRELKDMKQEALADALGITQQTISNIENSETVDEQR---LIEIA 57

Query: 60 KILA 63
          K L 
Sbjct: 58 KALD 61


>gi|15597081|ref|NP_250575.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107101318|ref|ZP_01365236.1| hypothetical protein PaerPA_01002352 [Pseudomonas aeruginosa PACS2]
 gi|254240277|ref|ZP_04933599.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192]
 gi|9947875|gb|AAG05273.1|AE004614_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126193655|gb|EAZ57718.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 5/117 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   +  + +   LT + LA +  +     ++ +R         P+   + ++     
Sbjct: 5   ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQS-----SPTASVLGRLAGGLG 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             + +LL    +      ++ ++                +    +G +   V +P  
Sbjct: 60  VALSELLGDAQAPAEPLCRRAQQEVWEDPASGYRRRQVGARDPRSGCEMVEVEIPAN 116


>gi|332297377|ref|YP_004439299.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168]
 gi|332180480|gb|AEE16168.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168]
          Length = 195

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 1   MTSFSHKKI----WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MTS  +K++     E +  + ER   T   +A++AG+  +  ++ +R         P+ +
Sbjct: 1   MTSTQNKRVPYRFGEKLRAVRERKGYTLKVVAQRAGVSESLVSQIERN-----KVSPAID 55

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++  +    +  +  L +    +      +  E   +                   +   
Sbjct: 56  TLLMLADVLDINLEFLFEEYRRNRPVQVIRANERRTVEEAEVIYEELAKPTESDGKHALE 115

Query: 117 T--VGVPEIRSPHNGIYAIQTQDTRHKTQDTS 146
           +  + +P     H G Y    ++     +  +
Sbjct: 116 SYLIRIPANGKTHRGSYGHMGRELGFIIEGKA 147


>gi|329849056|ref|ZP_08264084.1| XRE family transcriptional regulator [Asticcacaulis biprosthecum
           C19]
 gi|328844119|gb|EGF93688.1| XRE family transcriptional regulator [Asticcacaulis biprosthecum
           C19]
          Length = 197

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 30/201 (14%)

Query: 11  EAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E + R        T    AR+ G   +          E      S +   +         
Sbjct: 6   ERLMRARIEAGFETAVDAARRFGWTSSY------RNNESGTASFSFKKALEYAEKFKVRA 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L             +E ++P++    +G  G +          +++     +   +  
Sbjct: 60  AWLYAGIGPM------REAKVPVIGRALAGPDGSYIDD-------YDSGDFEPLEPFNI- 105

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILIL-NSAIQVNC--GDRLLIKPRTGDIVAKVLI 186
                          TSM P +  G+I +  +     +     ++L++   G  + K+L 
Sbjct: 106 -----EDSVAVIVDGTSMTPRFMPGEIAVFGHKYDDPSPLLNKQVLVRTIDGQRMIKILR 160

Query: 187 S-RRGRSIDLMSLNCCYPVDT 206
           S +     DL SLN  +    
Sbjct: 161 SSKTPGLWDLHSLNPAFAPIE 181


>gi|225388149|ref|ZP_03757873.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme
           DSM 15981]
 gi|225045810|gb|EEG56056.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme
           DSM 15981]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ +   L+   LA    +   + +K ++        +P  E++  +    N ++  L
Sbjct: 7   LRQIRKEKGLSQEDLAELLDVSRQAVSKWEQGAG-----YPEVETLLLLSNRLNISLDSL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +    +      + E    +L   P  +       V  +
Sbjct: 62  MATEIAREGGGGRAEVTGTILITSPHENVVVSCYKVISS 100


>gi|218438443|ref|YP_002376772.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171171|gb|ACK69904.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 114

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           +   + I +  +   L+   LA + GLD T  +K +    +   +      + +
Sbjct: 2  EQNFGQIIRQARKDKGLSQRELAERLGLDFTYLSKLENNRADYAPKEEVIRVLAQ 56


>gi|71083340|ref|YP_266059.1| hypothetical protein SAR11_0635 [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762229|ref|ZP_01264194.1| hypothetical protein PU1002_03151 [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062453|gb|AAZ21456.1| hypothetical protein SAR11_0635 [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91718031|gb|EAS84681.1| hypothetical protein PU1002_03151 [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 131

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + +   E    +  +          + Q  SM  +    GD+L+++ +++      ++  
Sbjct: 22  DYIE--EDVDLNVHLIKNVPATFIIRVQGKSMTDVGIYDGDLLVIDRSLKPKNFSTVV-A 78

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEW-IARIL 219
               ++V K  +  +     L S +       +   + E  I  ++
Sbjct: 79  NVHDELVVKSFVRSKDGQF-LTSGSKNIEDKIIIGDESEVFIWGVV 123


>gi|154248642|ref|YP_001419600.1| hypothetical protein Xaut_4724 [Xanthobacter autotrophicus Py2]
 gi|154162727|gb|ABS69943.1| protein of unknown function DUF955 [Xanthobacter autotrophicus
          Py2]
          Length = 474

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            A+ R+ E+  L  S LA++  + P+  N+ +     
Sbjct: 8  GHAVRRLREKLGLKQSELAQRLAVSPSYINQIESNQRP 45


>gi|83951509|ref|ZP_00960241.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
 gi|83836515|gb|EAP75812.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
          Length = 143

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 1  MTSFSHKKIW---------EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          MT    ++ W         + +    E   +T + LAR+ G+   +  K +    E R  
Sbjct: 13 MTETDSEQTWYDPDATTFGDRLAGAREASGMTQTQLARRLGVKEKTIEKWENDLSEPRAN 72

Query: 52 WPST 55
            S 
Sbjct: 73 RLSM 76


>gi|116619436|ref|YP_821592.1| hypothetical protein Acid_0295 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222598|gb|ABJ81307.1| hypothetical protein Acid_0295 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 268

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 25/127 (19%)

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                + V  PE          +            SM P    G + +       +   +
Sbjct: 148 ESAVEDWVPAPEGM-------QLSPDLFVGHVAGRSMEPRIPDGSLNLFRLHPAGSRQGK 200

Query: 171 LLIKPRTGDI------VAKVL-----ISRRGRS----IDLMSLNCCYPVDTVEMSDIEWI 215
           +L+  R G +        K                  + L  LN  +    VE      +
Sbjct: 201 ILLIERFGVLDETARYTIKRYTSRKVYRSEDEWQHENVRLEPLNPEFEAWDVEPEGFAVV 260

Query: 216 A---RIL 219
           A   R++
Sbjct: 261 AEWLRVI 267


>gi|317473295|ref|ZP_07932590.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA]
 gi|316899131|gb|EFV21150.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 9/175 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I R+ E+  L+   L++ +G+  +   + +R         P+  +++KI       
Sbjct: 5   VAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGN-----PTISTLWKISNGMKVP 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L   P +     +  + E  L       +   F          +  + +       +
Sbjct: 60  FDALTVRPKTPYEIIKTADIEPLLEDSGRVKNYPLFPDDADRKFAVY-YLKLEPYSRWES 118

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIVA 182
             +   T +          +          L     +   GD       TG+   
Sbjct: 119 EAHLKGTTEFITVFHGDLEI--CADYHKFTLTKDESIRFPGDTAHSYRNTGNDTV 171


>gi|302873525|ref|YP_003842158.1| signal peptidase I [Clostridium cellulovorans 743B]
 gi|307688295|ref|ZP_07630741.1| signal peptidase I [Clostridium cellulovorans 743B]
 gi|302576382|gb|ADL50394.1| signal peptidase I [Clostridium cellulovorans 743B]
          Length = 174

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GD-RLLIKP 175
           +P   +    ++  +      K    SM P  +  D L++           GD  +   P
Sbjct: 15  IPFTLAFIFTLFVKKFVFFNIKVPTESMYPTIKIDDRLLVTKVYNPKNLSTGDLIVFTIP 74

Query: 176 RTGDIVAKVLISRRGRSIDL 195
                + K LI + G  +++
Sbjct: 75  EYDKKLIKRLIGKPGDVVEI 94


>gi|239946011|ref|ZP_04697948.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|239992479|ref|ZP_04713143.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           11379]
 gi|291449463|ref|ZP_06588853.1| regulatory protein [Streptomyces roseosporus NRRL 15998]
 gi|291352410|gb|EFE79314.1| regulatory protein [Streptomyces roseosporus NRRL 15998]
          Length = 199

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 38/133 (28%), Gaps = 6/133 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+ +   +T + L+   G+  ++ ++ +  G     R PS E +  I  A    
Sbjct: 18  VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGG-----RRPSLELMLPIARAHEVP 72

Query: 69  ICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  L+                +      P +   G   +                    +
Sbjct: 73  LDDLVGAAPVGDPRVRAKPIVQHGRTMLPLTARPGGLQAYKLIQEPGSGGPPEQRTHEGY 132

Query: 128 NGIYAIQTQDTRH 140
             ++ +  +    
Sbjct: 133 EWLFVLSGKLRLL 145


>gi|308235243|ref|ZP_07665980.1| transcriptional regulator [Gardnerella vaginalis ATCC 14018]
 gi|311115056|ref|YP_003986277.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946550|gb|ADP39254.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019]
          Length = 157

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  +     +T   LA   G+   S  + +        R      I KI      ++  
Sbjct: 5  NIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTR-----LIDKICDKFKVSLFD 59

Query: 72 LLDLPF 77
          ++    
Sbjct: 60 IVHEKE 65


>gi|223984758|ref|ZP_03634870.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM
           12042]
 gi|223963244|gb|EEF67644.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM
           12042]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 48/173 (27%), Gaps = 11/173 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I R+ E   L+   LA+ + +  +   + +R         P+  +++KI       
Sbjct: 5   VAANIKRLREERKLSMEELAKFSSVSKSMIAQIERGEGN-----PTLSTLWKISNGLKVP 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L   P +     +  E +          +   F          +  + + +     +
Sbjct: 60  FDSLTVRPKTQHEIVKISEIQPLFENEGKVRNYSLFPDDENRRFAIY-YLELEKGSYWES 118

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGD-ILILNSAIQVN-CGDRLLIKPRTGD 179
             +   T +              +  D   I+     +    D +      GD
Sbjct: 119 EAHLQGTTEFITLFSGIV---KIKVKDKHFIIQKGDSLRFNADAVHSYQNIGD 168


>gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + +  + +  +LT   LA +  L     ++ +          PS ES   IL     
Sbjct: 2  NIGQKLRNLRKIKDLTQEELAERTDLSKGYISQIESGQS-----SPSMESFLHILEVLGT 56

Query: 68 TI 69
          + 
Sbjct: 57 SP 58


>gi|148655090|ref|YP_001275295.1| helix-turn-helix domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567200|gb|ABQ89345.1| helix-turn-helix domain protein [Roseiflexus sp. RS-1]
          Length = 119

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M SF ++++ E I R  +R  LT + L  + G+  +  +  +        R    E++  
Sbjct: 1  MPSF-NERVGEVIKRKRQRDRLTQAELGSRIGVSGSYISSIENGQSSA--RIAEIEALAT 57

Query: 61 ILAATNET 68
          +   T   
Sbjct: 58 VFRTTAFE 65


>gi|15671989|ref|NP_266163.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|281490506|ref|YP_003352486.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp.
           lactis KF147]
 gi|12722843|gb|AAK04105.1|AE006240_3 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|281374324|gb|ADA63857.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp.
           lactis KF147]
          Length = 107

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I    +  NL+   LA+K  +   S +K +          P+T+ I  +    + 
Sbjct: 2   EISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKS-----LPTTDQIILLSEIFDC 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           ++  LL          + +  +   L        GF    +F
Sbjct: 57  SLDTLLKGDKKMEEKAKHEIDDKRTLKLIYKVGWGFIIPFLF 98


>gi|21223622|ref|NP_629401.1| signal peptidase protein [Streptomyces coelicolor A3(2)]
 gi|289769158|ref|ZP_06528536.1| signal peptidase [Streptomyces lividans TK24]
 gi|9968705|emb|CAC05964.1| signal peptidase protein [Streptomyces coelicolor A3(2)]
 gi|289699357|gb|EFD66786.1| signal peptidase [Streptomyces lividans TK24]
          Length = 146

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD+L+++   +V  GD ++++       +V K    RRG    ++  
Sbjct: 23  EVTGPSMVPTLHHGDVLLVHWGARVRPGDVVVLRHPFQQDLLVVKRAAERRGAGWWVLGD 82

Query: 199 NC----CYPVDTVEMSDIEWIARI 218
           N           V   D+  + R+
Sbjct: 83  NAFAGGDSTDYGVVPQDL-VLGRV 105


>gi|119718420|ref|YP_925385.1| helix-turn-helix domain-containing protein [Nocardioides sp.
          JS614]
 gi|119539081|gb|ABL83698.1| helix-turn-helix domain protein [Nocardioides sp. JS614]
          Length = 128

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + + + E +        L+   LA +AG+     ++ +R       R PS E + +I  
Sbjct: 8  RTVEGLGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERG-----LRRPSAEVLQQIAK 62

Query: 64 ATNETICQLLDLPFSDGRTTEKKE 87
          A   +  QL               
Sbjct: 63 ALRISAEQLYIRAGIVDPHAGSPG 86


>gi|325833460|ref|ZP_08165909.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485384|gb|EGC87853.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 71

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  + K + + +  + E  NLT   LA   G+  +   K +        R  + + + K
Sbjct: 1  MTHATRKNVGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGN-----RNATIDFMEK 55

Query: 61 ILAATN 66
          +     
Sbjct: 56 VALGLG 61


>gi|118615955|ref|YP_904287.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118568065|gb|ABL02816.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
          Length = 263

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/163 (9%), Positives = 36/163 (22%), Gaps = 12/163 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S +    AI  + E H+ + + LA   G+     +  +R       R P   ++ K+  
Sbjct: 1   MSRESAGAAIRALRESHDWSLADLAAATGVSIMGLSYLERGA-----RKPHKGTVQKVEN 55

Query: 64  ATNETICQLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                      +  +     E       +  E                      G     
Sbjct: 56  GLGLPPGTYSRMLVAADPEAELARLLAARPTETASPRRRGVVVVDRHSDTDVLEGYAEAQ 115

Query: 118 VG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
           +  +  +        + +            +           +
Sbjct: 116 LDALRSVIDRLPASTSNEYDTYILSVVAQCVKAEMLAASSWRV 158


>gi|319934812|ref|ZP_08009257.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319810189|gb|EFW06551.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 302

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + +   L+   LA K  +   + +K +         +P  + +  I      TI  L
Sbjct: 7   LQSLRKEKGLSQEALAEKLHVSRQAVSKWESGAG-----YPEMDKLILISDLFGVTIDYL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +          ++ E +  +          F        G   + +
Sbjct: 62  IKDSHESVPDDQRAESKYFMNSQKIKEYMNFKRHFGLRIGGAVSAI 107


>gi|319790635|ref|YP_004152268.1| helix-turn-helix domain protein [Thermovibrio ammonificans HB-1]
 gi|317115137|gb|ADU97627.1| helix-turn-helix domain protein [Thermovibrio ammonificans HB-1]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            H  + E +  + E   ++   LA + G+ P+   +             S +++ K+LA
Sbjct: 21 LKHD-LAEQLKELMESKGISKKELAERMGVSPSYITRIF------GADNISLKTVAKVLA 73

Query: 64 ATN 66
          A  
Sbjct: 74 ALE 76


>gi|255527936|ref|ZP_05394778.1| transcriptional regulator, XRE family [Clostridium carboxidivorans
           P7]
 gi|255508363|gb|EET84761.1| transcriptional regulator, XRE family [Clostridium carboxidivorans
           P7]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 7/150 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + R+    NL+   LA  +G+     ++ ++         P+  +++KI    N  
Sbjct: 7   IAENLKRLRLERNLSLGQLAELSGVSKVMLSQIEKGDSN-----PTINTVWKIAKGLNVP 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L+D    +    +K E E             ++ +        +  + +    +  +
Sbjct: 62  YTVLIDKHEDETSVVKKSEAEYQNSEDGSYRVYCYYGNTPHRNFELF-LLELDSEATYTS 120

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
             ++ ++Q+     Q   +L      D L+
Sbjct: 121 VGHSEKSQEYISVIQGELVLTT-NNEDYLL 149


>gi|237668382|ref|ZP_04528366.1| transcriptional regulator, Cro/CI family [Clostridium butyricum
          E4 str. BoNT E BL5262]
 gi|237656730|gb|EEP54286.1| transcriptional regulator, Cro/CI family [Clostridium butyricum
          E4 str. BoNT E BL5262]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I        LT   L +K G+  ++  K +   IE   R  +  ++ K L  +  
Sbjct: 2  NINNIIKSRRLELGLTYEELGKKIGVGKSTVRKWETGLIENIKRD-NIIALSKALDISPS 60

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
           I    D   ++   T   E +I LL  
Sbjct: 61 IIMGWDDTNSNELSETHLSESQIELLNI 88


>gi|167618211|ref|ZP_02386842.1| DNA-binding protein [Burkholderia thailandensis Bt4]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 13/162 (8%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + ++   T   LA  AGL  +  +K +R         PS     K+  A    + Q
Sbjct: 4   RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSV-----PSIAVALKLSKALQVDVEQ 58

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L          T  +  +   +    S       +           V  P  R   +  +
Sbjct: 59  LFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPP-RDYVSSAF 117

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                +        S+   +           I++  GD +  
Sbjct: 118 REHEGEEMLFVHKGSVEIEFPNE-------TIKLKTGDSVYF 152


>gi|149189972|ref|ZP_01868250.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1]
 gi|148836138|gb|EDL53097.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1]
          Length = 155

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I ++  +   +   LA  +GL   +  + +R    G     S +S+  +   T   + Q 
Sbjct: 3  IRKLRLQRGWSQEQLAELSGLSIRTIQRIERGQKPGLE---SLKSLAAVFETTITELQQE 59

Query: 73 LDLPF 77
            +  
Sbjct: 60 PKMTS 64


>gi|90416619|ref|ZP_01224550.1| hypothetical protein GB2207_05437 [marine gamma proteobacterium
          HTCC2207]
 gi|90331818|gb|EAS47046.1| hypothetical protein GB2207_05437 [marine gamma proteobacterium
          HTCC2207]
          Length = 121

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             + +   + R+ +   ++ SGL+R  G+   + N+      +     P  +S+  I  
Sbjct: 10 LMRESMSTELARLMKLEGISQSGLSRATGVPQPTINRILSQVTQ----DPRRDSMISIAN 65

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
               +  L   P     + +  +    +    
Sbjct: 66 YFGVHLESLYGTPGIQRSSKKDPKAVEDVFNRI 98


>gi|37527342|ref|NP_930686.1| hypothetical protein plu3469 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786776|emb|CAE15842.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 30/128 (23%), Gaps = 2/128 (1%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++ E   L+   L R     P++  K +              S+ +IL        
Sbjct: 11  ERLTQIREARGLSKINLGRLVDRSPSTITKWENGNHS--PDAEVLHSLSQILNCPVSWFT 68

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           + +                   L        G+F           +   V          
Sbjct: 69  KPIVKYEKKPVFFRTLSTTAKDLCIASERYMGWFQELSCKMQEYLDYPEVNIPHLNVKDY 128

Query: 131 YAIQTQDT 138
            AI  Q  
Sbjct: 129 RAIDDQLI 136


>gi|317054764|ref|YP_004103231.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315447033|gb|ADU20597.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 198

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I R+      +   LA K+ +   + +  +         +P   S+  +      
Sbjct: 2   ELSKTIKRLRTEKGWSQETLAEKSYVSRQTISNWENEKN-----YPDVHSLLILSDLFGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           ++ +L+       + T   +    L      G  G  
Sbjct: 57  SLDELIKGDVETMKNTIHNKDAYALKRAQWCGVIGLI 93


>gi|302382805|ref|YP_003818628.1| XRE family transcriptional regulator [Brevundimonas subvibrioides
          ATCC 15264]
 gi|302193433|gb|ADL01005.1| transcriptional regulator, XRE family [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 475

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +   + R+     LT + +A   G+ P+  N  +R       R  S + + ++  
Sbjct: 11 LGARVKRLRRDRGLTQTAMAGDLGVSPSYLNHIERNQ-----RPVSAQLLLRLAD 60


>gi|152996491|ref|YP_001341326.1| putative prophage repressor [Marinomonas sp. MWYL1]
 gi|150837415|gb|ABR71391.1| putative prophage repressor [Marinomonas sp. MWYL1]
          Length = 150

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            T     + Q   M     + GD+L+++ ++    GD ++        V   L  +    
Sbjct: 53  PTTTFFVRAQGEPMEREDIQTGDVLVVDRSLTARHGDIVIAFEHGKMAVM-TLQLKPD-- 109

Query: 193 IDLMSLNCCYP 203
           + L   N  Y 
Sbjct: 110 VLLRPKNKAYA 120


>gi|116694764|ref|YP_728975.1| XRE family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529263|emb|CAJ95610.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16]
          Length = 198

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  A+  + ++  L+   L+R+AG+  +  ++ +R         P+   ++++  A    
Sbjct: 17  VGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLAN-----PTVAVLWRLANALGVN 71

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYF--PPSGSGGFFDSGVFPTGNKWNTVGV 120
           +   L    ++         +   +     P         G      ++    +
Sbjct: 72  LTDFLAGGAAERPAGGITVVQPHAIPSLKSPDTRCDLRILGPIDLAGRFEWYEL 125


>gi|160880106|ref|YP_001559074.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160428772|gb|ABX42335.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 268

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+ E I      H+L+   LA K G+   S +K +  G       P  + +  +    + 
Sbjct: 2  KLGEKIVMFRTEHHLSQGDLAEKLGVSRQSISKWETGGSV-----PDLDKLIALSELFDV 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|91224300|ref|ZP_01259562.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
          protein [Vibrio alginolyticus 12G01]
 gi|91190642|gb|EAS76909.1| prophage LambdaSo, transcriptional regulator, Cro/CI family
          protein [Vibrio alginolyticus 12G01]
          Length = 88

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 14/38 (36%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             +  +     +T   LA+K G+  ++ N  +     
Sbjct: 1  MSNLKAIRGELGVTQQALAKKVGVSQSAVNHYENGNRT 38


>gi|121997220|ref|YP_001002007.1| XRE family transcriptional regulator [Halorhodospira halophila
          SL1]
 gi|121588625|gb|ABM61205.1| transcriptional regulator, XRE family [Halorhodospira halophila
          SL1]
          Length = 88

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +I  + + + L+   LA  AG+D ++ +K +R G        S  ++F IL      
Sbjct: 16 GASIREIRQENGLSQEQLAMDAGIDQSTLSKIERIG----PHVTSWRTLFAILDVLGCE 70


>gi|329897117|ref|ZP_08271861.1| transcriptional regulator, XRE family [gamma proteobacterium
           IMCC3088]
 gi|328921409|gb|EGG28799.1| transcriptional regulator, XRE family [gamma proteobacterium
           IMCC3088]
          Length = 222

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 50/165 (30%), Gaps = 19/165 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   + ++ +  + T + ++++ G+   + +K +    +      +  S+ K+       
Sbjct: 24  IGRRLRQLRKEQDWTLADVSKRTGISVGTLSKLEHGKTD-----LNFSSVNKLATGLGLA 78

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVPEI 123
           +  L +                 +++           S V      +     N+    + 
Sbjct: 79  VTDLTNPSSHMMGRRAITIGGHGVMFNTTDVDYEVLCSEVANHRQGYLKGVVNSFTFDDS 138

Query: 124 RSPH-----NGIYAIQTQDTRHKTQDTSMLPLYRK-GDILILNSA 162
              H       +Y +       +       P+    GD ++ +S+
Sbjct: 139 LPWHRHQGQEFLYVLSG---GLELYTELYEPVLLNAGDSILFDSS 180


>gi|302866468|ref|YP_003835105.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|315502877|ref|YP_004081764.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5]
 gi|302569327|gb|ADL45529.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|315409496|gb|ADU07613.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5]
          Length = 214

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I R  +   LT  GLA ++GL     ++ +R             S+ K L  +   
Sbjct: 28  VGGRIRRYRKERGLTLRGLASRSGLSIGFLSQVERGISSIGLTALG--SVAKALDRSVAD 85

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-----EI 123
                        ++  +   +       +       +    +    + V  P       
Sbjct: 86  FFDAGTAAPDSTVSSLPRHFTLTRAETAATQYVSGQQTYRMLSDRGPDLVLEPMLVHIAP 145

Query: 124 RSPHNGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQVN 166
                  Y  + ++  +            +      GD + L S++   
Sbjct: 146 GGRRENAYGHRGEEFAYVISGELLYEVEGVEHRLFPGDSVHLRSSVPHQ 194


>gi|257897454|ref|ZP_05677107.1| predicted protein [Enterococcus faecium Com12]
 gi|293377213|ref|ZP_06623419.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecium PC4.1]
 gi|257834019|gb|EEV60440.1| predicted protein [Enterococcus faecium Com12]
 gi|292644162|gb|EFF62266.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecium PC4.1]
          Length = 82

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I    E   ++   L + AG + T+ +  +        R P+ +++ ++     ++
Sbjct: 22 LGARIAHAREGLGISQGELGKLAGFNQTTISLIETG-----KRLPNLKTLIRLSKILKKS 76


>gi|257876195|ref|ZP_05655848.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257810361|gb|EEV39181.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 284

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+ F+ +KI + I    +  NLT S LA +  +   + +  +R         P  E + +
Sbjct: 1  MSEFNMRKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNS-----LPDIEKLPQ 55

Query: 61 ILAATNETICQ 71
          + A  + +I +
Sbjct: 56 LAAILDLSIDE 66


>gi|257866591|ref|ZP_05646244.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257872893|ref|ZP_05652546.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257800549|gb|EEV29577.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257807057|gb|EEV35879.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 304

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+ F+ +KI + I    +  NLT S LA +  +   + +  +R         P  E + +
Sbjct: 1  MSEFNMRKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNS-----LPDIEKLPQ 55

Query: 61 ILAATNETICQ 71
          + A  + +I +
Sbjct: 56 LAAILDLSIDE 66


>gi|226366458|ref|YP_002784241.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226244948|dbj|BAH55296.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 184

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ R  ER  ++ + +AR+AG+  ++ ++ +  G       PS E+++ +  A +  
Sbjct: 10 IGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGN-----PSVETLWALCVALDVP 64

Query: 69 ICQ 71
          + Q
Sbjct: 65 MSQ 67


>gi|215488929|ref|YP_002331360.1| predicted DNA-bining transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215267001|emb|CAS11446.1| predicted DNA-bining transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 407

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + ++     L+ + LA   G+ P + +K +        + P +E++ ++    N T   
Sbjct: 12  RLAQVLAARRLSQTQLATMVGVSPATISKWRSGQ-----QAPESEALERLATVVNVTPEW 66

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                         +      +            +    T      V +PE++ P  
Sbjct: 67  FTRPLLKGMSKPLFRSNASAHVAARAMLETRIHWANELVTK-LTEFVDLPELKLPRR 122


>gi|182626312|ref|ZP_02954068.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177908410|gb|EDT70952.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + ++ ++  LT   LA   G+  +  +  +         + + E++   L    ++
Sbjct: 3  IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALANSLKLDLKS 60

Query: 69 ICQLLDLPFSDGRTTEKKE 87
                L          +E
Sbjct: 61 FFDDTLLEEDYYLKPLNEE 79


>gi|217959909|ref|YP_002338465.1| DNA-binding protein [Bacillus cereus AH187]
 gi|229139101|ref|ZP_04267678.1| transcriptional regulator, possible MerR [Bacillus cereus
           BDRD-ST26]
 gi|217064097|gb|ACJ78347.1| DNA-binding protein [Bacillus cereus AH187]
 gi|228644456|gb|EEL00711.1| transcriptional regulator, possible MerR [Bacillus cereus
           BDRD-ST26]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 5/133 (3%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             H ++ + +    +++ +T    A  AG+  +  ++ +R         PS   +  I  
Sbjct: 1   MIHDRLGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHAN-----PSLSVLELIAK 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A N  +  L            KK+    +             +  F  G  +  +   E 
Sbjct: 56  ALNVPLFTLFINEIDTDSLISKKKDRKKVYRENSDHIVYDVLTPDFMKGEVYVELEGKEY 115

Query: 124 RSPHNGIYAIQTQ 136
                 +  I   
Sbjct: 116 FLEEGDVVRIPPN 128


>gi|162448594|ref|YP_001610961.1| transcriptional regulator [Sorangium cellulosum 'So ce 56']
 gi|161159176|emb|CAN90481.1| transcriptional regulator [Sorangium cellulosum 'So ce 56']
          Length = 230

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 5/136 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R      L+   LA+ +G+      + +          P+   ++KI  A    
Sbjct: 51  VASNLKRFRAERGLSLERLAKASGVSRAMLGQIELGQST-----PTINVLWKIARALGVP 105

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L+    S   T  +      L       S         P   ++  + +      H 
Sbjct: 106 FSALMSQATSPVTTVMQASHARILRSRNGDFSSRALFPMDRPRNVEFYELRLAPRSVEHA 165

Query: 129 GIYAIQTQDTRHKTQD 144
             +A  T +    T+ 
Sbjct: 166 DAHAPGTAENLIVTEG 181


>gi|158423451|ref|YP_001524743.1| hypothetical protein AZC_1827 [Azorhizobium caulinodans ORS 571]
 gi|158330340|dbj|BAF87825.1| hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 231

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 23/41 (56%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          ++ + I R+ + +NL+ S LA ++G+  +  ++ +R     
Sbjct: 48 QLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNP 88


>gi|186475185|ref|YP_001856655.1| XRE family transcriptional regulator [Burkholderia phymatum STM815]
 gi|184191644|gb|ACC69609.1| transcriptional regulator, XRE family [Burkholderia phymatum
           STM815]
          Length = 229

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 6/136 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+     L+   LAR +G+      + +          PS + + K+ AA   
Sbjct: 36  RVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKV 90

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++   L     +G      ++   ++                P+  +++ + +  + +  
Sbjct: 91  SVAAFLRRHAVNGFEHLPADRSARVVTSNGRYWTRALHPDGEPSTAEFHELRIAPLHTEP 150

Query: 128 NGIYAIQTQDTRHKTQ 143
               A           
Sbjct: 151 GTQRA-PGTTVNLVVS 165


>gi|118430729|ref|YP_873954.1| transcription regulator [Staphylococcus phage phiNM]
 gi|104641621|gb|ABF73035.1| transcription regulator [Staphylococcus aureus phage phiNM1]
          Length = 77

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +D   +R   T S  A K G+ P+++N  +      + R      I K L 
Sbjct: 3  LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRDAF--RIAKTLD 51


>gi|52842577|ref|YP_096376.1| hypothetical protein lpg2368 [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|254498107|ref|ZP_05110864.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|52629688|gb|AAU28429.1| hypothetical protein lpg2368 [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|254352673|gb|EET11451.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 75

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             H+ I   I    ++  L+   LAR AG+  T     ++     R       ++ K+L
Sbjct: 1  MPKHE-IANLIHYYRKQSGLSQQELARLAGVGKTVIYDIEKGKESVR-----LNTLLKVL 54

Query: 63 AATN 66
             N
Sbjct: 55 DVLN 58


>gi|72161652|ref|YP_289309.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Thermobifida fusca YX]
 gi|71915384|gb|AAZ55286.1| helix-turn-helix motif [Thermobifida fusca YX]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 48/180 (26%), Gaps = 15/180 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI + I    +   L+   LA+   L PT  +  +R       R    + + +I AA   
Sbjct: 10  KIGQKIREHRQHAGLSQEELAKLVALSPTMLSAMERGT-----RGIKRDHVERIDAALGI 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                     S G            +      +   +            T          
Sbjct: 65  PGTLTELWDRSRGAGLPP---WYEQVADLERAASEIWVYHPLMVPGLLQTEEYAAHILRV 121

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDI-----LILNSAIQVNC-GDRLLIKPRTGDIV 181
           +   A   +      +           +      ++++  +     G R +++ + G ++
Sbjct: 122 SHPRATPAEIEEL-VRGQMERKAIFDQERPPRLIVVVDEGVLRRPTGGREVMRRQIGHLL 180


>gi|54307847|ref|YP_128867.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46912273|emb|CAG19065.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 51/215 (23%), Gaps = 12/215 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I ++A+   ++   L    GL   + ++          R      + +I    N +I
Sbjct: 22  LERIKQLAKIQGISQKQLGESLGLQQGTMSRKLSGKYGIEVRE-----LERIAVTLNTSI 76

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LL                        +             G+  +   V  +      
Sbjct: 77  GYLLTGQIDTSTQATTAITHESSQGSTCTYIPIIHRKDF---GSFIDGESVNVVSKRVIP 133

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRR 189
            +  +         + ++      G   +            +    R  +     +    
Sbjct: 134 QHLERDDCLGLFVDNENISQCAPIGSYALATKQAAYRPKQPVFASVRNSEPDFYHMTQLA 193

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARIL---WA 221
              I   S    +P   V   + +    I+   WA
Sbjct: 194 DGVIFSTSQ-PDFPNLFVNNDEFKVHGYIIQSDWA 227


>gi|50914452|ref|YP_060424.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS10394]
 gi|56808231|ref|ZP_00366003.1| COG1476: Predicted transcriptional regulators [Streptococcus
          pyogenes M49 591]
 gi|71903787|ref|YP_280590.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS6180]
 gi|94988808|ref|YP_596909.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS9429]
 gi|94992693|ref|YP_600792.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS2096]
 gi|94994634|ref|YP_602732.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS10750]
 gi|209559622|ref|YP_002286094.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          NZ131]
 gi|306827100|ref|ZP_07460396.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782]
 gi|50903526|gb|AAT87241.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS10394]
 gi|71802882|gb|AAX72235.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS6180]
 gi|94542316|gb|ABF32365.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS9429]
 gi|94546201|gb|ABF36248.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS2096]
 gi|94548142|gb|ABF38188.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS10750]
 gi|209540823|gb|ACI61399.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          NZ131]
 gi|304430704|gb|EFM33717.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782]
          Length = 76

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 1  MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M   + + I +  +  +  R  +  + +A+ AG+   + +  +R         PS     
Sbjct: 1  MKEMAMEVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAM 55

Query: 60 KILAATNETICQLLDLPF 77
          KI     E + ++  L  
Sbjct: 56 KIAKVFQEPVEEVFRLVE 73


>gi|324009503|gb|EGB78722.1| helix-turn-helix protein [Escherichia coli MS 57-2]
          Length = 95

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             + + + ++   E+  ++   LA+ +G+   +  +       G  +      I +I  
Sbjct: 1  MKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTK------IVEIAN 54

Query: 64 ATNETICQLLDLPFSDGRTTE 84
          A       L           +
Sbjct: 55 ALGVRTEWLSSGIGPMRNDGQ 75


>gi|319938878|ref|ZP_08013242.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811928|gb|EFW08194.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV]
          Length = 158

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  + + H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2  IGDNIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTS-----SVSTELIDRICQKFNVS 56

Query: 69 ICQ 71
             
Sbjct: 57 YVD 59


>gi|319757761|gb|ADV69703.1| transcriptional regulator [Streptococcus suis JS14]
          Length = 158

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +   H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2  IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 56

Query: 69 ICQ 71
             
Sbjct: 57 YVD 59


>gi|294498960|ref|YP_003562660.1| putative transcriptional regulator SinR [Bacillus megaterium QM
          B1551]
 gi|295704284|ref|YP_003597359.1| transcription regulator SinR [Bacillus megaterium DSM 319]
 gi|294348897|gb|ADE69226.1| probable transcription regulator sinR [Bacillus megaterium QM
          B1551]
 gi|294801943|gb|ADF39009.1| probable transcription regulator sinR [Bacillus megaterium DSM
          319]
          Length = 111

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +  +  ++ + LA +AG+  +  +  +R         PS + + KI  + N +
Sbjct: 3  IGQRIRDLRTKQGISLTELANRAGVAKSYISSVERGIQL----NPSIQFLNKISTSLNVS 58

Query: 69 ICQLLDLPF 77
          I +L+  P 
Sbjct: 59 IDRLIHEPM 67


>gi|291443072|ref|ZP_06582462.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291346019|gb|EFE72923.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/101 (9%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  +   H  +   LAR++G+  ++ ++ +R  +      P+   + ++      
Sbjct: 14  RLAVRLADLRTEHGWSLDELARRSGVSRSTLSRLERCEV-----SPTATLLGRLCTVYGR 68

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           T+ +LL    ++        ++                   
Sbjct: 69  TMSRLLMEVEAEPPPLVPAARQTVWRDEAAGFVRRSVSPPH 109


>gi|242243123|ref|ZP_04797568.1| bacteriophage transcriptional regulator [Staphylococcus
          epidermidis W23144]
 gi|242233471|gb|EES35783.1| bacteriophage transcriptional regulator [Staphylococcus
          epidermidis W23144]
          Length = 111

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 3/95 (3%)

Query: 1  MTSFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M + S +KI+ E + R+    N+    LA   G+   + +   +       R    +++ 
Sbjct: 1  MGTKSARKIFSENLQRLMRNKNVDQKELAEAIGVTQPTISNWIKEVK--YPRIKRIQTLA 58

Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
                   + +   +   +               
Sbjct: 59 DYFNVPKSELTEENFVVSKNQIAAHITPDVTEDEM 93


>gi|239507364|ref|YP_002939672.1| transcription regulator [Staphylococcus phage phiPVL-CN125]
 gi|238683989|gb|ACR54192.1| transcription regulator [Staphylococcus phage phiPVL-CN125]
          Length = 84

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +D   +R   T S  A K G+ P+++N  +      + R      I K L 
Sbjct: 10 LDEWRKRKGYTQSSFAEKLGISPSTYNIWENNPEMIKPRDAF--RIAKTLD 58


>gi|228994922|ref|ZP_04154700.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM
          12442]
 gi|228764824|gb|EEM13600.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM
          12442]
          Length = 116

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I E I  + + + +T   L    G+   + +  ++       + P  ES+ KI     
Sbjct: 2  IGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKG-----KKSPGRESLEKIADYFG 54


>gi|219852328|ref|YP_002466760.1| XRE family transcriptional regulator [Methanosphaerula palustris
           E1-9c]
 gi|219546587|gb|ACL17037.1| transcriptional regulator, XRE family [Methanosphaerula palustris
           E1-9c]
          Length = 184

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 4/145 (2%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I    E  +LT S LARKAG+  +   + +   ++   R  + + I ++L     +I   
Sbjct: 9   IRAKREMLDLTQSELARKAGVSQSMIARIEAGSVD--PRVGTLDKIIRVLNIAERSIVTA 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
             +  +  ++   + +    +              +         +    I       +A
Sbjct: 67  AQVMHTPVQSIHPENQIASAVDIMEKNGISQLPVILDGVPVGC--ISESAILFAIEEQHA 124

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDIL 157
            ++Q+   +    S  P       +
Sbjct: 125 HKSQNYLVRDFMESSFPTVPPDIDV 149


>gi|158348425|ref|YP_001522916.1| Predicted transcription regulator [Bacillus virus 1]
 gi|190410765|gb|ACE78285.1| predicted transcription regulator [Bacillus virus 1]
          Length = 78

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +    ++T   LA+  G    + +K +R  ++   R PS E ++ I     + +  +
Sbjct: 5  LRDVRRSFDITQEELAKAVGTTRQTIHKIERGKLK---RAPSYELMYAIAQFFGKKVEDI 61

Query: 73 LDLPFSDGR 81
                   
Sbjct: 62 FFTQVVTHE 70


>gi|50196919|ref|YP_052614.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|165871721|ref|ZP_02216366.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488]
 gi|167638961|ref|ZP_02397235.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193]
 gi|170707968|ref|ZP_02898417.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389]
 gi|177653556|ref|ZP_02935730.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174]
 gi|190566543|ref|ZP_03019460.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I]
 gi|229601932|ref|YP_002865577.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248]
 gi|254734209|ref|ZP_05191922.1| hypothetical protein BantWNA_03453 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254753484|ref|ZP_05205520.1| hypothetical protein BantV_13483 [Bacillus anthracis str. Vollum]
 gi|254758581|ref|ZP_05210608.1| hypothetical protein BantA9_09739 [Bacillus anthracis str.
           Australia 94]
 gi|50082981|gb|AAT70122.1| hypothetical protein GBAA_1022 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164712622|gb|EDR18154.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488]
 gi|167513091|gb|EDR88463.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193]
 gi|170127128|gb|EDS96006.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389]
 gi|172081360|gb|EDT66434.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174]
 gi|190562095|gb|EDV16063.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I]
 gi|229266340|gb|ACQ47977.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 5/108 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    E+ N + S LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5   ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +LL       +   +  K++    +       F              +
Sbjct: 60  ELLRSDEELTQKVIEDSKQLAYPKWKFFFDSLFMMGVFLFITKIVVWI 107


>gi|21223966|ref|NP_629745.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|3192004|emb|CAA19403.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
          Length = 71

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          +A+ ++  +  +T   LA   G+  T+ +  +        R P  E++  I       + 
Sbjct: 9  DALRQIRRQRGVTQYKLAASLGVHNTAISHYENGH-----RRPDVETLATIADVLGARMD 63

Query: 71 QL 72
            
Sbjct: 64 DF 65


>gi|148263542|ref|YP_001230248.1| XRE family transcriptional regulator [Geobacter uraniireducens
          Rf4]
 gi|146397042|gb|ABQ25675.1| transcriptional regulator, XRE family [Geobacter uraniireducens
          Rf4]
          Length = 91

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 21/43 (48%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           S + +  A+ +  ++  L+ + + +  G+D  + ++ ++   
Sbjct: 14 LSPESLGAALRKERKKKGLSQTDVGKSVGIDQPTISRVEKGNP 56


>gi|295108159|emb|CBL22112.1| Helix-turn-helix. [Ruminococcus obeum A2-162]
          Length = 110

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   I  +  ++N++   LA KAG+   S ++  +      +R P   ++  I  A +
Sbjct: 3   QNLGGRIAELLTQYNMSQRELADKAGITEVSMSRYIKG-----DRVPKGTTLANIATALH 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            T   LL+   S     E +  +I  L    +     
Sbjct: 58  TTTDFLLNGEGSGTGDFESEYYQIHRLIARNASQMSP 94


>gi|150401456|ref|YP_001325222.1| helix-turn-helix domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014159|gb|ABR56610.1| helix-turn-helix domain protein [Methanococcus aeolicus Nankai-3]
          Length = 162

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +     I +  E+   T   LA++ G+  ++ +K +R  +E   ++   + + K L  T
Sbjct: 77  EDYGTVIKQAREKRGWTLKELAKQIGIKESTLHKIERNELEPEEKY--VKRLEKELNIT 133


>gi|124026420|ref|YP_001015535.1| putative signal peptidase [Prochlorococcus marinus str. NATL1A]
 gi|123961488|gb|ABM76271.1| putative signal peptidase [Prochlorococcus marinus str. NATL1A]
          Length = 125

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 140 HKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSI 193
            +   TSM    ++GD++         I +  GD ++         ++ K +        
Sbjct: 32  LRVVGTSMERTLKEGDLVTYKKLNPKNIDLEIGDIVVASHPKTKNKLIIKRIHRIYQNKF 91

Query: 194 DLMSLNCCY--PVDTVEMSDIE-WIARI 218
           DL   N         + + +++  I ++
Sbjct: 92  DLRGDNSLSSTDSRELGLFELDLIIGKV 119


>gi|146311635|ref|YP_001176709.1| XRE family transcriptional regulator [Enterobacter sp. 638]
 gi|145318511|gb|ABP60658.1| transcriptional regulator, XRE family [Enterobacter sp. 638]
          Length = 175

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT   H  +   +    +    + S LA + G+      + +R         P+  +++K
Sbjct: 1   MTITQH--LATTLKTERQARGWSLSKLADETGVSKAMLGQIERNES-----SPTVSTLWK 53

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I    N      +          + +++ + +  L+           S     G    + 
Sbjct: 54  IATGLNVPFSAFISPEEQPQPVFDPQQQAMVVKPLFPWDDTLKFDHFSITLAPGALSEST 113

Query: 119 GVPEIRSPH 127
                   H
Sbjct: 114 PHEAGVVEH 122


>gi|329954215|ref|ZP_08295309.1| conserved domain protein [Bacteroides clarus YIT 12056]
 gi|328527921|gb|EGF54907.1| conserved domain protein [Bacteroides clarus YIT 12056]
          Length = 232

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 65/226 (28%), Gaps = 20/226 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +    +   LT     +  GL   + +K          R  + + I       N  
Sbjct: 4   LKERLSHFIDYTGLTVQMFEKTVGLSNGAVSKM-----GDNTRRSTIDKISNFFHDLNTN 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS--------GGFFDSGVFPTGNKWNTVGV 120
                +     G      E  I   Y P S                 V    +    +G 
Sbjct: 59  WLLTGEGEMLIGEYPTGNEITIHKNYAPKSREIQYDYKLIPIVHIDSVGGMHSPNAIIGE 118

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPR 176
           P+    +      +  D        SM+P    G +L+L   +        G+  +I+  
Sbjct: 119 PQYIEGYAPFTDAKEGDICIIQSGNSMVPTCPSGSLLLLRQVLNWQEYFGYGNIFVIELT 178

Query: 177 TGDIVAK---VLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
            G  + K            I  +S N   P + +  S I+ + +++
Sbjct: 179 DGRRITKEVSRYNENPNEYIWCISHNANVPDEELPKSMIKSVWKVI 224


>gi|304405777|ref|ZP_07387435.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304345020|gb|EFM10856.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 71

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + ++ + I    +    T   LA +  +        +R       R P  + +  I    
Sbjct: 3  NDQLAQRIRAFRKLKGFTQQQLAERLSVSVAVLGSLERGT-----RKPDPKLLANIAETL 57

Query: 66 NETICQ 71
               +
Sbjct: 58 GIDYDE 63


>gi|297162517|gb|ADI12229.1| putative transcriptional regulator, XRE family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 193

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 10/167 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPSTESIF 59
             ++   +  +      +   LAR+ G+  ++ ++ +R  I       G+       ++ 
Sbjct: 13  EARLAVRLAELRVERGWSLDELARRTGVSRSTLSRLERAEISPTAALLGKLCAAYERTMS 72

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++LA   E   QL+          EK       +  P  G  G    G+   G   +   
Sbjct: 73  RLLAEVEEEPPQLVRADRQAVWRDEKSGFTRRSVSPPHPGLRGELVEGILRPGADISY-D 131

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            P +      I+ +       +          R GD L      +  
Sbjct: 132 APPVPGLEQHIWVLDG---VLEVAVGGAAHELRAGDCLRFRLWDRSR 175


>gi|312114583|ref|YP_004012179.1| XRE family transcriptional regulator [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219712|gb|ADP71080.1| transcriptional regulator, XRE family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 477

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R+ E   LT    A   GL  +  N+ ++       R  +   + +I A     +  L
Sbjct: 10  LKRLREERGLTQIAFAEAIGLSASYLNQLEKNQ-----RPLTVPVLLRINATFGADMQLL 64

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            D   +      K+    P      S +     +   P 
Sbjct: 65  SDGDEARMIADLKEVFSDPASGETVSLAEIREIAASMPA 103


>gi|24375356|ref|NP_719399.1| Cro/CI family transcriptional regulator [Shewanella oneidensis
          MR-1]
 gi|24350177|gb|AAN56843.1|AE015819_7 transcriptional regulator, Cro/CI family [Shewanella oneidensis
          MR-1]
          Length = 75

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +  ++  A+ +M +   L+   LA +A +D +   + +R  +       + + ++K
Sbjct: 1  MKTLA-TELGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEVN-----LTLDMLYK 54

Query: 61 ILAATNETICQ 71
          I    +    +
Sbjct: 55 IAEELDCEPHE 65


>gi|167036463|ref|YP_001664041.1| XRE family transcriptional regulator [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320114889|ref|YP_004185048.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166855297|gb|ABY93705.1| transcriptional regulator, XRE family [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319927980|gb|ADV78665.1| helix-turn-helix domain protein [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 129

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + ++  +T   LA   G+   +    +        R P  + + KI    N +
Sbjct: 2  LGKRIKELRKKKGITQKELASYLGISDRAVGYYESGQ-----RTPPPDILQKIADFFNVS 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
             LL          E  E        
Sbjct: 57 TDYLLGRTNIYNPADEITEAVFDDPEL 83


>gi|110638814|ref|YP_679023.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110281495|gb|ABG59681.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 99

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          KI   I        +T   LA K G   +  ++ +    E R       ++ KI+ 
Sbjct: 36 KIGALIQEARIEKGMTQEELAIKCGTTKSYISRIENNIKEVR-----ISTLQKIVE 86


>gi|312961080|ref|ZP_07775585.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6]
 gi|311284738|gb|EFQ63314.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6]
          Length = 113

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +  +I   I +     NLT   +A + G+   + ++ +R  +E      S   + ++   
Sbjct: 7  TQAQIGRMIAKHRTERNLTQEEVAERLGIGSEAISRLERGVVE-----LSVVKLMQLADI 61

Query: 65 TNETICQ 71
           +  + +
Sbjct: 62 FDCRMDE 68


>gi|308067869|ref|YP_003869474.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305857148|gb|ADM68936.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 157

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + +  E    + + LA  AG+  +  ++ +          P   ++ KI  A + + 
Sbjct: 7   GTYLKQQREHKQWSINQLADAAGISNSQISRIENGLRG----IPKPSTLRKIAEALSVSY 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            +++      G     ++    L        
Sbjct: 63  TEMMKAAGYWGDDDSTEQNSHELYRSTVPEW 93


>gi|302064024|ref|ZP_07255565.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
           tomato K40]
          Length = 120

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +   L+ + LA   G D    ++ +R         P  E + +I    N  
Sbjct: 11  VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGST-----LPGIEQLIRIATVFNVA 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             +LL       RT     ++          S  + +  
Sbjct: 66  PGELLPGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEM 104


>gi|228912155|ref|ZP_04075870.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200]
 gi|228942096|ref|ZP_04104636.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228975025|ref|ZP_04135584.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228981664|ref|ZP_04141959.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407]
 gi|228777776|gb|EEM26048.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407]
 gi|228784546|gb|EEM32566.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228817430|gb|EEM63515.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228847492|gb|EEM92431.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200]
 gi|324328858|gb|ADY24118.1| XRE family transcriptional regulator [Bacillus thuringiensis
          serovar finitimus YBT-020]
 gi|326942746|gb|AEA18642.1| transcriptional regulator [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 109

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I   I  + +   +  + LA   G++ T  +  +        R PS E++  I   TN
Sbjct: 3  ETIGSRIKEVRKSLKMKQNELADAVGVNYTMISLYESN-----KREPSRETVENIARVTN 57

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +   ++ L        E  +K    +   
Sbjct: 58 VSADYIMGLSKHKTFDEETSKKITDDVEDI 87


>gi|229162462|ref|ZP_04290423.1| Helix-turn-helix domain protein [Bacillus cereus R309803]
 gi|228620941|gb|EEK77806.1| Helix-turn-helix domain protein [Bacillus cereus R309803]
          Length = 277

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAISKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|255655682|ref|ZP_05401091.1| putative transcriptional regulator [Clostridium difficile
           QCD-23m63]
 gi|296451687|ref|ZP_06893419.1| cro/CI family transcriptional regulator [Clostridium difficile
           NAP08]
 gi|296878931|ref|ZP_06902930.1| cro/CI family transcriptional regulator [Clostridium difficile
           NAP07]
 gi|296259450|gb|EFH06313.1| cro/CI family transcriptional regulator [Clostridium difficile
           NAP08]
 gi|296430044|gb|EFH15892.1| cro/CI family transcriptional regulator [Clostridium difficile
           NAP07]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +  I + ++R+    NL+   LA  +G+     ++ ++         P+  +I+KI 
Sbjct: 1   MSINTIIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSN-----PTVNTIWKIA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           +  N     +L+ P ++     K + ++ +          ++ +        +  + + E
Sbjct: 56  SGLNVPYTAILEQPQNETFIVSKTDIDVQVSENKDYRLYCYYPNTPTRNFELF-QMELEE 114

Query: 123 IRSPHNGIYAIQTQDTRHKTQD 144
             S  +  ++ ++Q+     + 
Sbjct: 115 GHSYTSVGHSEKSQEYIMIIEG 136


>gi|118464968|ref|YP_879634.1| XRE family transcriptional regulator [Mycobacterium avium 104]
 gi|118166255|gb|ABK67152.1| transcriptional regulator, XRE family protein [Mycobacterium
          avium 104]
          Length = 474

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             + R+ E   LT   LAR  GL  +  N+ +     
Sbjct: 7  GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRP 44


>gi|21244773|ref|NP_644355.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21110470|gb|AAM38891.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 66

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E +  +   L  + G+   + N  +    +     PS    F+I     E+I 
Sbjct: 3  SRVRELREANGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 HVFLYEE 64


>gi|312794292|ref|YP_004027215.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181432|gb|ADQ41602.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 144

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  + E++  T   L+  +G+  ++ ++ +R   +     P+  +I  I  A N 
Sbjct: 2  DIGKRIVELREKYGFTRYKLSELSGVSQSALSEIERGIKQ-----PTITTIENICRAFNL 56

Query: 68 TICQLLDLPFSDGRTTEKK 86
          T+         +     + 
Sbjct: 57 TLADFFAEKEPEIPPEVRS 75


>gi|312864429|ref|ZP_07724662.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311100150|gb|EFQ58361.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 75

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S  K+   +  + E+  LT   LA   G+   +    +          PS E   K
Sbjct: 1  MAK-SKIKVITNLKEIREKGGLTQQELAEAVGVRRETILHLENNRYN-----PSLELALK 54

Query: 61 ILAATNETICQLLDLPF 77
          I    ++++ ++  L  
Sbjct: 55 IAQVFDKSVEEIFRLNE 71


>gi|302547803|ref|ZP_07300145.1| putative Helix-turn-helix domain protein [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302465421|gb|EFL28514.1| putative Helix-turn-helix domain protein [Streptomyces
          himastatinicus ATCC 53653]
          Length = 197

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/83 (9%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +      T + L+   G+  ++ ++ +        R P+ E +  +       
Sbjct: 13 VGPRLRALRRERGATLAQLSETTGISLSTLSRLESGQ-----RKPTLELLLPLAKTYGVQ 67

Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91
          + +L+  P +       +     
Sbjct: 68 LDELVGAPPTGDPRIHPRPFTRH 90


>gi|238026932|ref|YP_002911163.1| DNA-binding protein [Burkholderia glumae BGR1]
 gi|237876126|gb|ACR28459.1| DNA-binding protein [Burkholderia glumae BGR1]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 16/127 (12%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + ++  L+   LA +AGL  +  +K +R         PS     ++  A +  + Q
Sbjct: 5   RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLST-----PSVAVAMQLAQALHVEVGQ 59

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L      +             +    +              + +  +     R       
Sbjct: 60  LFSADGDEQA-----------ITVVRADERLRMSRAPDDAQSGYEVIAAEAGRKRLLPFM 108

Query: 132 AIQTQDT 138
                D 
Sbjct: 109 IRPAHDF 115


>gi|222152205|ref|YP_002561380.1| DNA-binding protein [Streptococcus uberis 0140J]
 gi|222113016|emb|CAR40321.1| putative DNA-binding protein [Streptococcus uberis 0140J]
          Length = 135

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT FS +     +  + +  NL+   LA +  +   + +K +          P  E++ K
Sbjct: 1  MTPFSSQ-----LKILRQAKNLSQEALAEQLFISRQAISKWENGDAT-----PDLENLVK 50

Query: 61 ILAATNETICQ 71
          +      ++ +
Sbjct: 51 LAEIFKVSLDE 61


>gi|254171970|ref|ZP_04878646.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4]
 gi|214033866|gb|EEB74692.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I ++ +   +T   LARKAG+      K +   ++     P   +  +IL A  E   
Sbjct: 10  SVIRKIRKELGITQEELARKAGVTQAYIAKLESGRVD-----PRLSTFNRILQALLECKK 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L              +    +       +          +GNK             +  
Sbjct: 65  ALPKARDVMSSPVISVKPYEKVETVIKLMNSHNISQIPVISGNKVVGSVTERSLVRRSLE 124

Query: 131 YAIQTQDTRHKTQDT 145
           Y         +  D 
Sbjct: 125 YEDIYDRKVLEVMDE 139


>gi|213583433|ref|ZP_03365259.1| LexA repressor [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 61

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 168 GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
           G  ++ +    ++  K L  + G  ++L+  N  +    V++ +
Sbjct: 1   GQVVVARID-DEVTVKRLKKQ-GNKVELLPENSEFTPIVVDLRE 42


>gi|167755999|ref|ZP_02428126.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402]
 gi|167703991|gb|EDS18570.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 2/110 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I    ++  L+   LA +  +   + +K +               + K L  T   
Sbjct: 3   LGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNI--DKIMDVAKALEITLNE 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +  L +    +    E    ++ L           +       G     +
Sbjct: 61  LLGLEEDSNDEYAKLESILNQVVLTQNNEIIRNKKYLKMGLVIGTGIFII 110


>gi|154497045|ref|ZP_02035741.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC
          29799]
 gi|150273444|gb|EDN00572.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC
          29799]
          Length = 94

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 5/72 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   ++ + +   +T   LA    +   +    +          PS    FKI     
Sbjct: 25 EGLKNRLEELRKARGMTQEELAEALEVSRQTVGSLENGRYN-----PSILLAFKIARLFE 79

Query: 67 ETICQLLDLPFS 78
           TI ++      
Sbjct: 80 TTIEEVFLYEEQ 91


>gi|308068399|ref|YP_003870004.1| transcriptional regulator y4dJ [Paenibacillus polymyxa E681]
 gi|305857678|gb|ADM69466.1| Putative HTH-type transcriptional regulator y4dJ [Paenibacillus
           polymyxa E681]
          Length = 112

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 5/107 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +   L+   L  K G   +   + +R          S  +I KI  A +  
Sbjct: 10  VGARIRALRKEKGLSQESLGEKGGFHFSYIGQIERGEKN-----VSLINIAKIANALDVN 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           + QL      D + T+ +E    ++      S               
Sbjct: 65  LIQLFAYVNEDIKVTKHEEGIQEIVNILQKSSPEKVRLARNVIREII 111


>gi|301632617|ref|XP_002945378.1| PREDICTED: hypothetical protein LOC100487190 [Xenopus (Silurana)
          tropicalis]
          Length = 81

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 19/51 (37%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          M     + + +A+ ++      + S LA + G+D    +  +        R
Sbjct: 1  MEDVVSQALGQALRKLRTERGWSQSDLALRVGMDRNYLSLIELGRNSPSVR 51


>gi|257139965|ref|ZP_05588227.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 13/162 (8%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + ++   T   LA  AGL  +  +K +R         PS     K+  A    + Q
Sbjct: 4   RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSV-----PSIAVALKLSKALQVDVEQ 58

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L          T  +  +   +    S       +           V  P  R   +  +
Sbjct: 59  LFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPP-RDYVSSAF 117

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                +        S+   +           I++  GD +  
Sbjct: 118 REHEGEEMLFVHKGSVEIEFPNE-------TIKLKTGDSVYF 152


>gi|167896507|ref|ZP_02483909.1| DNA-binding protein [Burkholderia pseudomallei 7894]
          Length = 202

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           TS +  ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++
Sbjct: 18  TSATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRL 72

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             A   ++ +L   P +          +IP L    +         +   G  +    +
Sbjct: 73  TNALGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130


>gi|328953267|ref|YP_004370601.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453591|gb|AEB09420.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E + R+ + ++LT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2   KIGEKLKRLRQANSLTQEELANRAYLTKGFISQLERDQT-----SPSIATLKDILDVLGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           ++         D     +  +                    
Sbjct: 57  SLADFFRDLPQDRVVYPQSARITTSNSTTACRVEVLVPDAQ 97


>gi|327466846|gb|EGF12364.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK330]
          Length = 194

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   ++   LA K      + N  +        R P  E + +     + +
Sbjct: 83  ERLKKLRKAAGMSQKNLALKLNTSQQNINYWENGQ-----RNPKREKLIETADFFDVS 135


>gi|329116048|ref|ZP_08244765.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326906453|gb|EGE53367.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 236

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + E+  LT + LA+K G+     +  +      RN+  S E + ++        
Sbjct: 8  GAKLTEVREKRGLTKTELAKKLGVSQQYISDIELN----RNKTVSDEFVTRLAIYFQTKK 63

Query: 70 CQLLDLPFSDGRTTEKKEKEI 90
           +  D   +     +      
Sbjct: 64 VEFYDYYENINFNFKPSGSRC 84


>gi|261879523|ref|ZP_06005950.1| transcriptional regulator [Prevotella bergensis DSM 17361]
 gi|270333840|gb|EFA44626.1| transcriptional regulator [Prevotella bergensis DSM 17361]
          Length = 73

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E+  L+   LA +AGL  T     +R       R PS   I+KI         
Sbjct: 15 HKVRTLREQQGLSQEKLAERAGLHRTYIGMVERLE-----RNPSLVCIYKIANGLGVHAS 69

Query: 71 Q 71
          Q
Sbjct: 70 Q 70


>gi|288932481|ref|YP_003436541.1| XRE family transcriptional regulator [Ferroglobus placidus DSM
           10642]
 gi|288894729|gb|ADC66266.1| transcriptional regulator, XRE family [Ferroglobus placidus DSM
           10642]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT-NETICQ 71
           I R  ++  LT   LA   G+      + +   ++ +      + IFK+L     +   +
Sbjct: 8   IKRRRKKLGLTQKKLAELVGVSQPLIARLESGDLDPKLSL--IKRIFKVLDELEGKMTAK 65

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            +  P     +     K++  + +    S           G    
Sbjct: 66  KIMNPNVIFASPNDTAKKVIEIMWEKGISQIPVIERGKVVGTVTE 110


>gi|227534216|ref|ZP_03964265.1| xre family transcriptional regulator [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227188150|gb|EEI68217.1| xre family transcriptional regulator [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 344

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I        LT   LA K G+   + +K ++        +P    +  +       
Sbjct: 3   IDQVIRERRLALGLTQEELADKIGVSAPAVSKWEKRVS-----YPDITLLPALARILGTD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           +  LL    +      +   E  +     +G     
Sbjct: 58  VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93


>gi|227363208|ref|ZP_03847341.1| helix-turn-helix domain protein [Lactobacillus reuteri MM2-3]
 gi|325681627|ref|ZP_08161148.1| XRE family transcriptional regulator [Lactobacillus reuteri
          MM4-1A]
 gi|325682688|ref|ZP_08162204.1| XRE family transcriptional regulator [Lactobacillus reuteri
          MM4-1A]
 gi|227071748|gb|EEI10038.1| helix-turn-helix domain protein [Lactobacillus reuteri MM2-3]
 gi|324977038|gb|EGC13989.1| XRE family transcriptional regulator [Lactobacillus reuteri
          MM4-1A]
 gi|324979092|gb|EGC16038.1| XRE family transcriptional regulator [Lactobacillus reuteri
          MM4-1A]
          Length = 157

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 22/44 (50%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           +   + E I ++ E    + + LAR+  ++ T+ NK ++   +
Sbjct: 13 LNDDILREKIIKLREERGWSQAELARRINMNNTALNKVEKGTRK 56


>gi|160885068|ref|ZP_02066071.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483]
 gi|298483202|ref|ZP_07001382.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides sp. D22]
 gi|156109418|gb|EDO11163.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483]
 gi|295084669|emb|CBK66192.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A]
 gi|298270719|gb|EFI12300.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides sp. D22]
          Length = 134

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I+R+     +T + L    G+   + +K ++            E + +I +A   T
Sbjct: 12  LGRKIERVRRLRGMTQAELGDLLGITKQAVSKIEQTEK------FDDERLGEIASALGVT 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +  L +              E   +    S +G       FP         
Sbjct: 66  VDGLKNFNEETILYNTNNFYENCGVKSAVSNTGNNQTFNSFPVEQVIEIFE 116


>gi|329937439|ref|ZP_08286997.1| putative transcriptional regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329303315|gb|EGG47202.1| putative transcriptional regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 232

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/120 (9%), Positives = 34/120 (28%), Gaps = 9/120 (7%)

Query: 1   MTSFSHKK-------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
           M   + +        +   I  +      +   LA +A L  ++ ++ +      R    
Sbjct: 1   MLPMTQEDDGDLDGLVRRRIRALRVAQGWSLEELAARARLSQSTLSRIETGRR--RLALD 58

Query: 54  STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
              ++ + L  + + + +          + +    ++  L     G          P  +
Sbjct: 59  QLVTLARALDTSLDQLVETAVDDVVSHPSVDAAHGQLSWLLKAQPGVSVVRQRMTNPPPD 118


>gi|312897912|ref|ZP_07757326.1| helix-turn-helix protein [Megasphaera micronuciformis F0359]
 gi|310621007|gb|EFQ04553.1| helix-turn-helix protein [Megasphaera micronuciformis F0359]
          Length = 125

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 3/124 (2%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + I+E I R+ + +N++   LA+K G    ++ NK +   I+        +     L  T
Sbjct: 2   ETIYERIRRLRQENNMSQDKLAKKTGYTSRSTINKIEAGKID--ISRAKIKVFADALGVT 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              +    D       T  +  +    L   P     F  S      +    V + E   
Sbjct: 60  PAYLMGWEDESEQGYYTDPEVAEYAEELRTNPKYRLLFNASKDLSKEDIDFVVDMIERLK 119

Query: 126 PHNG 129
              G
Sbjct: 120 AREG 123


>gi|306826019|ref|ZP_07459355.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304431735|gb|EFM34715.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 166

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +  + +    +   LA +  +   S +K +   +      P  E I ++      
Sbjct: 3   KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           T   LL    S+  +TE   +E    Y+    S G +     
Sbjct: 58  TTDYLLLDENSEKGSTEVSLEEDKDKYYKEVKSFGLWQVIYI 99


>gi|227502499|ref|ZP_03932548.1| transcriptional regulator [Corynebacterium accolens ATCC 49725]
 gi|306835073|ref|ZP_07468116.1| DNA-binding protein [Corynebacterium accolens ATCC 49726]
 gi|227076772|gb|EEI14735.1| transcriptional regulator [Corynebacterium accolens ATCC 49725]
 gi|304569054|gb|EFM44576.1| DNA-binding protein [Corynebacterium accolens ATCC 49726]
          Length = 469

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 50/201 (24%), Gaps = 17/201 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++    +L+ + LA   GL  +  N+ +        R  +   + +I       
Sbjct: 6   VGSRLRQLRRERDLSQASLAGTLGLSASYVNQIEHDV-----RPLTVPVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S      +   +   L   P       +            V V        
Sbjct: 61  ATFFSRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDVHRRYRNVR 120

Query: 129 GIYAI-------QTQDTRHKTQDTSMLPLYRKGDILI--LNSAIQVNCGDRLLI---KPR 176
              ++                    +   +      +  L+   +   GD  +       
Sbjct: 121 DKLSLATDTRRTSESAAALSMPHDEVRDFFYARQNYLDGLDHHAEELAGDLGVSGFGIRN 180

Query: 177 TGDIVAKVLISRRGRSIDLMS 197
           T   +A  L  + G  I+L +
Sbjct: 181 TEQALANRLREKHGVEIELTA 201


>gi|256376030|ref|YP_003099690.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255920333|gb|ACU35844.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 512

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++   I     +   + + LA       ++ N+ ++ G        S E + +I  A 
Sbjct: 12 RVGGLIRASRRQRGWSQAQLATAVSTSQSAINRIEQGGQN-----LSLEMLSRISEAL 64


>gi|210634736|ref|ZP_03298264.1| hypothetical protein COLSTE_02189 [Collinsella stercoris DSM 13279]
 gi|210158676|gb|EEA89647.1| hypothetical protein COLSTE_02189 [Collinsella stercoris DSM 13279]
          Length = 125

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 5/117 (4%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           AI +M ++  ++ +  A + G+   +    +R         PS E I+        +  +
Sbjct: 4   AIQQMRKKMRISQTEFAERIGVSLRTVGSWERGESV-----PSAEQIWNCAVVLGCSPNE 58

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +L            +                 F+          ++  + +  +  +
Sbjct: 59  ILCWDDERPHEDSGEHLTSEEREIVGCYRESTFERKKSLMQTARDSADMSKEMAKRS 115


>gi|192359188|ref|YP_001982024.1| putative transcriptional regulator [Cellvibrio japonicus Ueda107]
 gi|190685353|gb|ACE83031.1| Putative transcriptional regulator [Cellvibrio japonicus Ueda107]
          Length = 87

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+     + + +  +     L+   LA++AG+  T+  + +           S   + +
Sbjct: 1  MTTL--ADVADLLRSVRREAGLSQEALAQRAGVSRTTVARMETLAKG----DMSVSVLLR 54

Query: 61 ILAATNET 68
          +L      
Sbjct: 55 LLETAGYD 62


>gi|168209895|ref|ZP_02635520.1| helix-turn-helix domain protein [Clostridium perfringens B str.
          ATCC 3626]
 gi|170711951|gb|EDT24133.1| helix-turn-helix domain protein [Clostridium perfringens B str.
          ATCC 3626]
          Length = 268

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          K+ E +  + +R  L+   LA K G+   + +K +      
Sbjct: 2  KLAEKLQLIRKREGLSQEDLAEKLGISRQAVSKWESGQSVP 42


>gi|160933079|ref|ZP_02080468.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753]
 gi|156868153|gb|EDO61525.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 17/45 (37%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
           +  ++    +R  L+   +A K G+   + +K +        R 
Sbjct: 2  NLGNSLFHARKRRGLSQEDVAEKLGVSRQTISKWETGETIPDIRQ 46


>gi|160881041|ref|YP_001560009.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160429707|gb|ABX43270.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 200

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 17/38 (44%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          +K+ + I ++ + H  T   +A    +   + +K +  
Sbjct: 4  EKVGKLIKQLRKEHGYTQQQVANALNISNKTVSKWENG 41


>gi|319744698|gb|EFV97043.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813]
          Length = 168

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +   H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 12 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 66

Query: 69 ICQ 71
             
Sbjct: 67 YVD 69


>gi|332652748|ref|ZP_08418493.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332517894|gb|EGJ47497.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 413

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          +   I  +     L+   L    G+   + +K +    
Sbjct: 3  LGTRIAALRRERGLSQEALGELVGVSRQAVSKWESDSA 40


>gi|300088555|ref|YP_003759077.1| XRE family transcriptional regulator [Dehalogenimonas
          lykanthroporepellens BL-DC-9]
 gi|299528288|gb|ADJ26756.1| transcriptional regulator, XRE family [Dehalogenimonas
          lykanthroporepellens BL-DC-9]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 12/92 (13%)

Query: 1  MTSFSH-------KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
          M + S         ++   + R      LT   LA ++G+  +   + +R       R+P
Sbjct: 1  MDTLSGTVQTTLPAELGAVLRRRRLEIPLTLQELADRSGISVSHIGRIERGE-----RFP 55

Query: 54 STESIFKILAATNETICQLLDLPFSDGRTTEK 85
          S + + ++         +L  L          
Sbjct: 56 SAKVLLRLACHLQYEENELFALAGYLTPPESP 87


>gi|253751715|ref|YP_003024856.1| antidote epsilon protein [Streptococcus suis SC84]
 gi|253755571|ref|YP_003028711.1| antidote epsilon protein [Streptococcus suis BM407]
 gi|251816004|emb|CAZ51621.1| antidote epsilon protein [Streptococcus suis SC84]
 gi|251818035|emb|CAZ55824.1| antidote epsilon protein [Streptococcus suis BM407]
          Length = 158

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +   H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2  IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 56

Query: 69 ICQ 71
             
Sbjct: 57 YVD 59


>gi|283796605|ref|ZP_06345758.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1]
 gi|291076025|gb|EFE13389.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +  +     LT   LA +A L     ++ +R         PS  ++  IL     T
Sbjct: 3  IGAKLKELRVLKGLTQEELADRAELSKGFISQVERDLT-----SPSIATLMDILQCLGTT 57

Query: 69 ICQLL 73
          I +  
Sbjct: 58 IGEFF 62


>gi|223043346|ref|ZP_03613392.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|314934995|ref|ZP_07842354.1| putative transcriptional regulator [Staphylococcus caprae C87]
 gi|222443135|gb|EEE49234.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|313652925|gb|EFS16688.1| putative transcriptional regulator [Staphylococcus caprae C87]
          Length = 67

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R     + LA+KAG+   + +  +R         PS  +  KI    N
Sbjct: 3  NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAIKIARIFN 53


>gi|170748375|ref|YP_001754635.1| XRE family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654897|gb|ACB23952.1| transcriptional regulator, XRE family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 208

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG------RNRWPSTESIFK- 60
           ++ + I R+ + +NL+ S LA ++G+  +  ++ +R           R       SI + 
Sbjct: 26  QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + A   E   +      +    +E  +  + ++ +  +     +       G   ++   
Sbjct: 86  LAAGDEEPFIEKTSRADTPILVSEDGKVRLAIIGWLKTIEWLQWYEVTADPGGVLDSDPH 145

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
                      ++       +   
Sbjct: 146 QRGSVE---SLSVTEGAFEVEIGG 166


>gi|220925537|ref|YP_002500839.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219950144|gb|ACL60536.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 124

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I    E   LT   LA KAG+     ++ +    EG     + +++ K+  A N T+ 
Sbjct: 66  NRIRVWREHRGLTAKALAEKAGIAQPFLSQIETGRREG-----TIDTLRKLAQALNLTLD 120

Query: 71  Q 71
            
Sbjct: 121 D 121


>gi|157149791|ref|YP_001450164.1| Cro/CI family transcriptional regulator [Streptococcus gordonii
          str. Challis substr. CH1]
 gi|28461301|gb|AAO43830.1| Cro/CI family transcriptional regulator [Streptococcus gordonii]
 gi|157074585|gb|ABV09268.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii
          str. Challis substr. CH1]
          Length = 69

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   +  + E   +T   LA K G+   +    +          PS E   KI      
Sbjct: 3  KILTNLKAIREDARMTQQELADKIGVRRETILHLENNRYN-----PSLEMALKIARVFGM 57

Query: 68 TICQLLDLPF 77
          ++  +  L  
Sbjct: 58 SVEDIFRLNE 67


>gi|157158980|ref|YP_001463318.1| transcriptional repressor DicA [Escherichia coli E24377A]
 gi|157081010|gb|ABV20718.1| putative transcriptional regulator DicA [Escherichia coli
          E24377A]
          Length = 131

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + + +  ++  LT   LA   G    S  K +    E     P  +++  +  A   +  
Sbjct: 4  DRLSQRRKQLGLTQQQLADMVGRSSVSVFKWESGQNE-----PKGQNLLALANALKCSAT 58

Query: 71 QLLDLPFSDGRTTEKK 86
           LL        T   +
Sbjct: 59 WLLFGDEDQAPTPVDE 74


>gi|223932178|ref|ZP_03624182.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
 gi|223899159|gb|EEF65516.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
          Length = 158

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +   H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2  IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 56

Query: 69 ICQ 71
             
Sbjct: 57 YVD 59


>gi|259909005|ref|YP_002649361.1| Predicted transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|224964627|emb|CAX56141.1| Predicted transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|283479016|emb|CAY74932.1| putative DNA-binding protein [Erwinia pyrifoliae DSM 12163]
          Length = 187

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 46/162 (28%), Gaps = 10/162 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58
           + +++   +  +    + +   LA   G+   S ++ +R          +        ++
Sbjct: 6   TEQRLARRLAELRLEKSWSLETLAELTGISRASLSRIERAETSPTATLLNRLCNAYGLTM 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            ++L+   +   QL+           +       +  P               G + +  
Sbjct: 66  SRLLSEVEQGGMQLMRGDSQSVWHDAQSGYRRRSVSPPAQAFHAELVEARLDGGARIDY- 124

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
            +P +      I+ +       +           +GD L  +
Sbjct: 125 DMPSLAGLEQHIWMLGG---VLEFTMDERHWRLEQGDCLRFH 163


>gi|237808823|ref|YP_002893263.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187]
 gi|237501084|gb|ACQ93677.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187]
          Length = 186

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/170 (8%), Positives = 40/170 (23%), Gaps = 12/170 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       I   +  + ++   +    A   G+      + +R         P+  +++K
Sbjct: 1   MQDLIR-HIAATLQLLRKQRGWSLDKTAAATGVSKAMLGQIERGES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I      +    L+            +            +           G +   V +
Sbjct: 55  IATGFETSFSTFLEPSVQLQDIWRTSDSSAVQHRNKHDIAAKAVIPFDPQFGFELLLVTL 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQ 164
           P      +  +A    +                      GD +  +++  
Sbjct: 115 PAGIEHLSAAHADGVTEHVIPLDGTLEIMSDGQWHPLDAGDAMRFDASRP 164


>gi|167582937|ref|ZP_02375811.1| DNA-binding protein [Burkholderia thailandensis TXDOH]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 13/162 (8%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + ++   T   LA   GL  +  +K +R         PS     K+  A    + Q
Sbjct: 4   RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSV-----PSIAVALKLSKALQVDVEQ 58

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L          T  +  +   +    S       +           V  P  R   +  +
Sbjct: 59  LFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPP-RDYVSSAF 117

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
                +        S+   +           I++  GD +  
Sbjct: 118 REHEGEEMLFVHKGSVEIEFPNE-------TIKLKTGDAVYF 152


>gi|153954530|ref|YP_001395295.1| hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555]
 gi|146347388|gb|EDK33924.1| Hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555]
          Length = 100

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +  E I  +   + LT + LA+  G+     ++ +        + PS E + K+  A N 
Sbjct: 2  QFGERIKSLRLSNKLTATQLAKDIGVTREYLSRLENNA-----KSPSFELLEKLCGALNI 56

Query: 68 TICQLLDLPFSDGRTTE 84
          T+ +      SD     
Sbjct: 57 TLAEFFKTDSSDIIPEH 73


>gi|42782397|ref|NP_979644.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|42738322|gb|AAS42252.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 374

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/194 (8%), Positives = 50/194 (25%), Gaps = 14/194 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             N +I +L+           +         F                   ++   +   
Sbjct: 56  YFNISIDELICYTPQMEPEDIRDLYHRLAEAFSEKPFDEVMVECREIIKKYYSCFPL--- 112

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182
                 +  +              + +  +   L      +    D  L+ +  +     
Sbjct: 113 ---LLQMGLLFINHHMLTEDTDKRIDMLEEAMNLFSRVQEE--SDDVSLVKEAVSFQATC 167

Query: 183 KVLISRRGRSIDLM 196
            +++++    + L+
Sbjct: 168 YLILNKPNEVLQLL 181


>gi|77408024|ref|ZP_00784773.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
 gi|77413847|ref|ZP_00790025.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77160087|gb|EAO71220.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77173386|gb|EAO76506.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
          Length = 112

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + +   LT   +A + G    ++ + +        + PS E++ K  +  N +
Sbjct: 4  ERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESG-----KKKPSAETLEKFASFFNVS 56


>gi|255279936|ref|ZP_05344491.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
           14469]
 gi|255269709|gb|EET62914.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
           14469]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 6/103 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +     +   T + +A K  +  +++   +        R P  E++ +I    + ++ 
Sbjct: 7   EYLTMYRRQRGYTQAEMAEKLEISRSTYTNYETGN-----RAPDFETLIQIGDILDCSLD 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +L             + +E   +Y                 G 
Sbjct: 62  ELFGRDRGGSARYPDRVREAAPVYRTN-TEYRAKPERRLAIGQ 103


>gi|146318591|ref|YP_001198303.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|146320791|ref|YP_001200502.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|145689397|gb|ABP89903.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145691597|gb|ABP92102.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
          Length = 168

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +   H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 12 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 66

Query: 69 ICQ 71
             
Sbjct: 67 YVD 69


>gi|159043477|ref|YP_001532271.1| hypothetical protein Dshi_0925 [Dinoroseobacter shibae DFL 12]
 gi|157911237|gb|ABV92670.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12]
          Length = 66

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 149 PLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGR---SIDLMSLNCCYPVD 205
           P    GD ++++ A +      + +      +VAK L         ++ ++S N  Y   
Sbjct: 4   PTLLDGDNVLVDMARRAPNPPGIFVLDDGMGLVAKRLEHIPNSDPPAVRVISDNGFYSPY 63

Query: 206 TV 207
            +
Sbjct: 64  EL 65


>gi|94266062|ref|ZP_01289781.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93453384|gb|EAT03812.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
          Length = 109

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 2/104 (1%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + I    +   L+   LA + G+   +  + +R       R  +   +  IL    +
Sbjct: 2   NVGQRIRSRRQVLGLSQRELAARLGITFQAIQRWERGET--FPRKETLPQLLAILEVGAD 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            +     L   D  T      E                    P 
Sbjct: 60  WLVGTPSLAGPDVSTIPPDVLEAVRDPRIQQIVRTAAKVLKQPA 103


>gi|19746353|ref|NP_607489.1| transcriptional regulator [Streptococcus pyogenes MGAS8232]
 gi|19748548|gb|AAL97988.1| putative transcriptional regulator [Streptococcus pyogenes
          MGAS8232]
          Length = 73

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       +   +  +  R  +  + +A+ AG+   + +  +R         PS     K
Sbjct: 1  MAM--EVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAMK 53

Query: 61 ILAATNETICQLLDLPF 77
          I     E + ++  L  
Sbjct: 54 IAKVFQEPVEEVFHLVE 70


>gi|317506907|ref|ZP_07964679.1| hypothetical protein HMPREF9336_01050 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316254835|gb|EFV14133.1| hypothetical protein HMPREF9336_01050 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 148

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          EA+    E   +T   LAR AG+  T+    +          P+ +++ K+ A     + 
Sbjct: 12 EALKAAREERKITVQDLARCAGVTYTTVWTWENG-----KHAPNIDTLVKVAAYLEIPVA 66

Query: 71 QLLDLPF 77
          QL+ +P 
Sbjct: 67 QLVSIPE 73



 Score = 36.3 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           E +  +     LT   LA+ AG+  T  +K +R    
Sbjct: 76  ETLGDLRVLAGLTQPQLAKAAGITTTVLSKLERGETP 112


>gi|326203817|ref|ZP_08193679.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325985915|gb|EGD46749.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 69

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 14/42 (33%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          I   I ++ E   L    LA   G+  T  +K +        
Sbjct: 5  IKNNIQKLRESRGLNQEDLAEVLGVTRTYLSKLENQKFSPGP 46


>gi|299821483|ref|ZP_07053371.1| DNA-binding protein [Listeria grayi DSM 20601]
 gi|299817148|gb|EFI84384.1| DNA-binding protein [Listeria grayi DSM 20601]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 57/190 (30%), Gaps = 20/190 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I  +    NLT   L  +  L     ++ +R         PS  ++F IL     
Sbjct: 2   EIGKKIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-----SPSIVTLFDILEVLGS 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +     D      +    + +      F      G+    + P  N+     V    + H
Sbjct: 57  SPKAFFDEEEHTQKVIYGEGEHT----FFEDEEKGYRIKWLVPESNEKEMEPVLLEIAAH 112

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLI 186
           +   + +   +  +T    +         +++         G+ +             +I
Sbjct: 113 SAFKSFEPSLS--ETFGYVLEGEI----TILIGKNAYIAKNGEAVYFSATDEH----RII 162

Query: 187 SRRGRSIDLM 196
           ++  +   L+
Sbjct: 163 NQTDQPAKLI 172


>gi|218247058|ref|YP_002372429.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|218167536|gb|ACK66273.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801]
          Length = 534

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 4/47 (8%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            +  +I  A     +R  ++   LA K G   +     +R     + 
Sbjct: 478 LTSDQILAA----RQRQGMSQRALAEKLGKSQSWIRDLERGRFSAKP 520


>gi|167856042|ref|ZP_02478786.1| helix-turn-helix domain protein [Haemophilus parasuis 29755]
 gi|219870567|ref|YP_002474942.1| XRE family transcriptional regulator [Haemophilus parasuis
          SH0165]
 gi|167852837|gb|EDS24107.1| helix-turn-helix domain protein [Haemophilus parasuis 29755]
 gi|219690771|gb|ACL31994.1| XRE family transcriptional regulator [Haemophilus parasuis
          SH0165]
          Length = 114

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I +AI +  +   LT + LA   G+   + ++ +R         P+   + ++    +
Sbjct: 10 QTIGQAIAKYRQASGLTQAQLAEILGISNDAVSRMERGKTI-----PTVLRLLELSEIFH 64

Query: 67 ETICQ 71
            +  
Sbjct: 65 CEVAD 69


>gi|220924825|ref|YP_002500127.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219949432|gb|ACL59824.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 218

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 61/192 (31%), Gaps = 26/192 (13%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I R+ + +NL+ S LA ++G+  +  ++ +R         P+  +I+++  A + 
Sbjct: 35  QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETN-----PTLATIWRLSQALDV 89

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +  + +     +    EK  +    +     G      +G   T        V       
Sbjct: 90  S-IERVLATGDEEPFIEKSSRADTPILVSEDGKVKLAITGWIKTVEWLQWYDVTAEPGGE 148

Query: 128 NGIYA-IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
               A  +                      + +            + + +TG+ +     
Sbjct: 149 LDSDAHQRGSVECLSV--------LEGEFEVEVA---------GAVQRVKTGETL--RYR 189

Query: 187 SRRGRSIDLMSL 198
             R  ++  +S 
Sbjct: 190 CDRPHTVRCISD 201


>gi|78221537|ref|YP_383284.1| XRE family transcriptional regulator [Geobacter metallireducens
          GS-15]
 gi|78192792|gb|ABB30559.1| transcriptional regulator, XRE family [Geobacter metallireducens
          GS-15]
          Length = 117

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 26/88 (29%)

Query: 3  SFSHKKI--------------------WEAID---RMAERHNLTPSGLARKAGLDPTSFN 39
            +HKK+                    +  +D   +      +T + +A + G   ++  
Sbjct: 1  MLTHKKLKARALERPDVKAEYDRLDEEFAFLDEFLKARAAAGVTQAEVAERIGTTQSAIA 60

Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNE 67
          + +     G    PS  ++ K   A   
Sbjct: 61 RLESG---GGKHSPSLATLQKYAHALGC 85


>gi|56421430|ref|YP_148748.1| hypothetical protein GK2895 [Geobacillus kaustophilus HTA426]
 gi|56381272|dbj|BAD77180.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 44/151 (29%), Gaps = 19/151 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I+  I  + ++ +LT   L+ K GL  +  ++ +R          +  S+ KI  A  
Sbjct: 2   EEIYRKIRDIRKQRDLTLKELSEKTGLSVSFLSQVERGTT-----SLAITSLKKIADALE 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----------FPTGNKWN 116
             I    +   +     + ++++   +    +       +               G   +
Sbjct: 57  VPITDFFENEANQNFVVKVEKRKPFRIEGSSAEYTRLAGNFNGRSLEPLIVTLAPGLVQD 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
            V            Y ++             
Sbjct: 117 NV---FSHPGEEFYYVLEG-AVIFNVDGKEY 143


>gi|325107542|ref|YP_004268610.1| hypothetical protein Plabr_0967 [Planctomyces brasiliensis DSM
           5305]
 gi|324967810|gb|ADY58588.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 116

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 1/104 (0%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +  E +  + ++  LT   LA    +  +  +K +   +   + +PS   + K+  A + 
Sbjct: 2   QFGERVRELRKQRGLTQQKLAVLLDVSLSYISKVENERLNAGD-YPSEVFVLKLAKALDA 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
              +LL L         ++ +E P  +   + +           
Sbjct: 61  DEDELLLLTDRVPAAIRQRIRERPDAFRELAKADDSLLDQFLAM 104


>gi|293402167|ref|ZP_06646305.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304274|gb|EFE45525.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 60

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          I+ + ++  +T   LA++ G+  +S +  KR   +     PS + +  +       I  
Sbjct: 5  IEVLMKKKGVTAYRLAKETGIPQSSISDWKRGRCK-----PSVKMLKILADYFGVDIKD 58


>gi|260844501|ref|YP_003222279.1| putative phage repressor protein CI [Escherichia coli O103:H2 str.
           12009]
 gi|260854336|ref|YP_003228227.1| putative repressor protein [Escherichia coli O26:H11 str. 11368]
 gi|257752985|dbj|BAI24487.1| predicted repressor protein [Escherichia coli O26:H11 str. 11368]
 gi|257759648|dbj|BAI31145.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str.
           12009]
 gi|323152493|gb|EFZ38776.1| helix-turn-helix family protein [Escherichia coli EPECa14]
          Length = 130

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/97 (10%), Positives = 26/97 (26%), Gaps = 6/97 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + ++ +  N+  S L R+ G+ P S     +         P  + + K+   +   + 
Sbjct: 5   KRLQQVLQELNINQSELGRRLGVKPQSVQGWLKGV------MPRMDKLEKLAELSQHPVH 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
                  + G        +                  
Sbjct: 59  WFFMEEETLGDKMAVSSNDNQPQLTEQQRKIISLLDE 95


>gi|212696472|ref|ZP_03304600.1| hypothetical protein ANHYDRO_01010 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212676565|gb|EEB36172.1| hypothetical protein ANHYDRO_01010 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 65

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          I ++ + + L    LA++ G+   +    +    +     PS E   KI
Sbjct: 5  IKKLRKENGLRQEDLAKELGVSRQTIIAIENNKYD-----PSLELAIKI 48


>gi|160944796|ref|ZP_02092023.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443980|gb|EDP20984.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii
           M21/2]
          Length = 120

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +  I + I        +T   LA + G+  T  +  +          PS +++  I+
Sbjct: 1   MVDYADIGKRIRTCRLAKGMTQEQLANEVGVVVTHISHIETGNSV-----PSLKTLIDII 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
            A + +  +LL +     +          L       +  
Sbjct: 56  NALDCSADELLCIEIKKAKPVFDSWMTEQLADCSADEAKI 95


>gi|330862695|emb|CBX72841.1| hypothetical protein YEW_CE09110 [Yersinia enterocolitica W22703]
          Length = 178

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +  E +  +     ++    A + G   +  ++ +R G        S ++I  
Sbjct: 25 MKKTLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 79

Query: 61 ILAATNETICQLL 73
          +  A N    Q  
Sbjct: 80 LANALNVEPWQFF 92


>gi|322812212|pdb|2XJ3|A Chain A, High Resolution Structure Of The T55c Mutant Of Cylr2.
 gi|322812213|pdb|2XJ3|B Chain B, High Resolution Structure Of The T55c Mutant Of Cylr2
          Length = 66

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +  + E+  ++ S LA    +   + N  ++         PS +   KI    N  
Sbjct: 2  IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYN-----PSLQLALKIAYYLNCP 56

Query: 69 ICQLLDLP 76
          +  +    
Sbjct: 57 LEDIFQWQ 64


>gi|315649148|ref|ZP_07902239.1| transcriptional regulator, XRE family protein [Paenibacillus vortex
           V453]
 gi|315275464|gb|EFU38821.1| transcriptional regulator, XRE family protein [Paenibacillus vortex
           V453]
          Length = 120

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 7/114 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I++ I+ + E   +T        G+   +F   KR         PST  + +I A  +
Sbjct: 2   QSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTT-----PSTNKLIEIAAFFS 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            ++  L+    S      +   E  +       +                 +  
Sbjct: 57  VSLDWLIIGKGSPNTRVRESRGEYEVDPEAADLAMSGLAENEK--EFIREYIEF 108


>gi|302523789|ref|ZP_07276131.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302432684|gb|EFL04500.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 141

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I +      ++   L++ AG+     ++ +R       R PS E + +I      
Sbjct: 20 DIGEYIRQQRSSAKISLRQLSKLAGVSNPYLSQIERGV-----RKPSAEILQQIAKGLRI 74

Query: 68 T 68
          +
Sbjct: 75 S 75


>gi|240103012|ref|YP_002959321.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3]
 gi|239910566|gb|ACS33457.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3]
          Length = 195

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             I ++ +   +T   LARKAG+      K +   ++     P   +  +IL A  E   
Sbjct: 14  SIIRKIRKELGITQEELARKAGVTQAYIAKLESGKVD-----PRLSTFNRILQALLECKR 68

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L              +    +       +          +G+K             +  
Sbjct: 69  ALPKAKDVMSSPVISVKPYEKVETVIKLMNSHNISQIPVISGSKVVGSVTERSLVRRSLE 128

Query: 131 YAIQTQDTRHKTQDT 145
           Y         +  D 
Sbjct: 129 YEDIYDRKVLEVMDE 143


>gi|319425158|gb|ADV53232.1| DNA polymerase V subunit, UmuD [Shewanella putrefaciens 200]
          Length = 135

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 12/123 (9%)

Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLP-LYRKGDI 156
                 P          P         S    +    +       +  SM       GDI
Sbjct: 1   MRVIPIPARAGITGFESPAAEYTQLGLSLDELLIDHPSSTFLAFAEGDSMQGKGIFDGDI 60

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDIEWI 215
           LI++    V  GD ++      + V K++     R + L S N  +    +    +    
Sbjct: 61  LIIDRHETVRNGDVIVASLNR-EFVCKIIDI--PRRLLLSS-NQQHQPVIIHEYDEFSIE 116

Query: 216 ARI 218
             I
Sbjct: 117 GVI 119


>gi|332363209|gb|EGJ40994.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK49]
          Length = 205

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFAV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82


>gi|329934425|ref|ZP_08284504.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
 gi|329306021|gb|EGG49876.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
          Length = 277

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 46/171 (26%), Gaps = 24/171 (14%)

Query: 7   KKIWEAIDRMAER----------------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            ++   +    ER                  L    LA  AGL P+ + + ++    GR+
Sbjct: 9   NQLGSFLRSRRERIDAATAGVVDSTRRRVKGLRREELALLAGLSPSYYARLEQ----GRD 64

Query: 51  RWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDS 106
           R PS E +  +         +   L             E      +     S    + D 
Sbjct: 65  RNPSREVLRALADVLRLDDTERTHLWSLAMPALPPAGNEGAPAPAVRPGVLSLLERWADL 124

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
             F  G   + +    +    N  ++           D     +Y   + +
Sbjct: 125 PAFVVGPGRDVLAGTPLAERVNPAWSPGHNLIAFTFLDPRSRTVYPDWEEI 175


>gi|323701996|ref|ZP_08113665.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533082|gb|EGB22952.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 19/151 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I E I  +  + NLT   L+ K GL  +  ++ +R          +  S+ KI  A N
Sbjct: 2   EEICEKIRSLRNQQNLTLKELSEKTGLSVSFLSQVERGTS-----SLAITSLKKIADALN 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS----------GVFPTGNKWN 116
             I        +     +K+E++   +    +                       G   +
Sbjct: 57  VPITSFFTSYQNQNFLVKKEEQKAFRIEGSTAEYIRLGGEFSGKVLEPLLVTLDPGQTRD 116

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
            V            Y ++             
Sbjct: 117 NV---FSHPGEEFYYVLEG-AVIFNVDGKEY 143


>gi|302672233|ref|YP_003832193.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302396706|gb|ADL35611.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 364

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E I R  ++  +T S LA    +   + ++ +         +P    +  I    + 
Sbjct: 3   KLNENIKRYRQQKCMTQSQLADVFNVSEQAISRWENGNT-----YPDITLLPAIADYFHV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
           TI +L+ +         +K  E            
Sbjct: 58  TIDELMGMESYKDEREIEKVFEQCRENDRKGHVH 91


>gi|294500289|ref|YP_003563989.1| DNA-binding protein [Bacillus megaterium QM B1551]
 gi|294350226|gb|ADE70555.1| DNA-binding protein [Bacillus megaterium QM B1551]
          Length = 66

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + +   ++   LA+  G+   + N  +    +     PS    F++ A    T+ 
Sbjct: 4  NRIKELRKSKRMSQDELAKVCGVSRQTINAIENNKYD-----PSLTLAFQLAAELGATVD 58

Query: 71 QLLDLP 76
          +L    
Sbjct: 59 ELFLFH 64


>gi|227432755|ref|ZP_03914721.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
 gi|227351491|gb|EEJ41751.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
          Length = 256

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I  + +++ LT    A K  +   S +  +R        +P+TE +  I+   + 
Sbjct: 18 EIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKG-----YPTTEMMLLIIEKFDL 72

Query: 68 TICQLLDLPFSDGRTTEKK 86
           +   +  P +     +++
Sbjct: 73 PLDFFIIPPTNSCEDNDEE 91


>gi|154499861|ref|ZP_02037899.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC
           29799]
 gi|150271459|gb|EDM98716.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC
           29799]
          Length = 409

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 50/212 (23%), Gaps = 25/212 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG---------RNRWPSTESIF 59
           + + I  + +   L+  GL    G+   + +K +               R    S   + 
Sbjct: 3   LGQRIAALRKEKGLSQEGLGELVGVSRQAVSKWEADKTVPDVNNCIAMSRVFGISLAGLL 62

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLL------YFPPSGSGGFFDSGVFPTGN 113
           ++  +  +   +      S+ +    +      L        P     G           
Sbjct: 63  EVEESLGDGAERTGGEQLSEEQLAMVEAVVTRYLEKRKRRIRPGPLILGGILVLTVVLLP 122

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR-------KGDILI--LNSAIQ 164
            W  +   E R         + +          +                ++  ++ A  
Sbjct: 123 AWEWLTQLERRMSSISREMEELEWKIVSGVGDKVTATLEAESSLVTDWSCILSAVDLAAN 182

Query: 165 VNCGDRLLIKPRTGD-IVAKVLISRRGRSIDL 195
               D  +     G+      L    G  + +
Sbjct: 183 TATYDIAVTMKEVGEDTTVSFLARSGGDQVTV 214


>gi|154248374|ref|YP_001419332.1| XRE family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gi|154162459|gb|ABS69675.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus
          Py2]
          Length = 203

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I R+ + +NL+ S LA ++G+  +  ++ +R         P+  +++++  A + 
Sbjct: 20 QLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETN-----PTLATVWRLSQALDM 74

Query: 68 T 68
          T
Sbjct: 75 T 75


>gi|306833652|ref|ZP_07466779.1| transcriptional regulator [Streptococcus bovis ATCC 700338]
 gi|304424422|gb|EFM27561.1| transcriptional regulator [Streptococcus bovis ATCC 700338]
          Length = 168

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +   H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 12 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 66

Query: 69 ICQ 71
             
Sbjct: 67 YVD 69


>gi|221209564|ref|ZP_03582545.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD1]
 gi|221170252|gb|EEE02718.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD1]
          Length = 200

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 14/151 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  + +   +T S LA + G      ++ +R         P+   +  I  A        
Sbjct: 29  IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 83

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--------GVPEIR 124
             L          +  E   +Y+    +       +    +   +           P   
Sbjct: 84  YSLSKPRSIPWVTRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGASSGERPVDD 143

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
           S   G + ++ +                  D
Sbjct: 144 SDEQGGFVLEGEL-TIWVDGDDTPVTLGPND 173


>gi|254478231|ref|ZP_05091612.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035827|gb|EEB76520.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 218

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + ++ E   L    +A+  G+ P+++   ++       R PS E + K+    N +
Sbjct: 93  QRLRQLREEKGLLQKDVAKILGITPSAYGYYEQG-----KREPSMEVLKKLSDFFNVS 145


>gi|257060127|ref|YP_003138015.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|256590293|gb|ACV01180.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802]
          Length = 534

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 4/47 (8%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            +  +I  A     +R  ++   LA K G   +     +R     + 
Sbjct: 478 LTSDQILAA----RQRQGMSQRALAEKLGKSQSWIRDLERGRFSAKP 520


>gi|14520844|ref|NP_126319.1| repressor protein, putative [Pyrococcus abyssi GE5]
 gi|5458060|emb|CAB49550.1| Helix-turn-helix repressor protein family [Pyrococcus abyssi GE5]
          Length = 73

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +    E++ LT   LAR  G+   +    ++   +     PS    FKI       I 
Sbjct: 3  NRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYD-----PSLRLAFKIARFFGVRIE 57

Query: 71 QLLDLPFSDGRTTEKK 86
           +           + +
Sbjct: 58 DIFIYEEELTPRGDNR 73


>gi|77409837|ref|ZP_00786476.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
 gi|77171552|gb|EAO74782.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
          Length = 148

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +  + +   LT   LA + G+   +  + +    + +      + + K   
Sbjct: 1  MNRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKP--DKAKELAKYFN 52


>gi|76787968|ref|YP_330681.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae
          A909]
 gi|77406878|ref|ZP_00783904.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B]
 gi|76563025|gb|ABA45609.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae
          A909]
 gi|77174510|gb|EAO77353.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B]
          Length = 204

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +  + +   LT   LA + G+   +  + +    + +      + + K   
Sbjct: 1  MNRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKP--DKAKELAKYFN 52


>gi|327393585|dbj|BAK11007.1| putative transcriptional regulator [Pantoea ananatis AJ13355]
          Length = 194

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 1   MTSFSHKKIWEA-IDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           M   S  +I ++ I R+     +  NLT + LA+++G+     +K +R         PS 
Sbjct: 1   MDKTSKNQIVDSDIARLLLKHRKARNLTVTELAQRSGVSQAMISKVERGTS-----SPSA 55

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
             + ++  A N T+ +L         +      +        S   G     + P G   
Sbjct: 56  TILSRLANAMNITLSKLFAELELRQNSLVLFADQQQHWTDEQS---GITRWSLSPAGACP 112

Query: 116 NTVGVP 121
             + V 
Sbjct: 113 ELIRVE 118


>gi|323693266|ref|ZP_08107484.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323502749|gb|EGB18593.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 151

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +  +  +T   LA +  +   + +  +R   E     P   ++ KI       +
Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVSE-----PDLNTLKKICYLFGVHM 65

Query: 70 CQLLDLPFSDGRTTEKKEKEI 90
                  +   T EKKEK  
Sbjct: 66 DDFAKEVITKMETYEKKEKRQ 86


>gi|289664753|ref|ZP_06486334.1| putative DNA binding protein [Xanthomonas campestris pv.
          vasculorum NCPPB702]
 gi|289669222|ref|ZP_06490297.1| putative DNA binding protein [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 66

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 5/69 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E    +   L  + G+   + N  +    +     PS    F+I     E+I 
Sbjct: 3  SRVRELREASGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57

Query: 71 QLLDLPFSD 79
           +       
Sbjct: 58 HVFLYEDGH 66


>gi|302381785|ref|YP_003817608.1| XRE family transcriptional regulator [Brevundimonas subvibrioides
          ATCC 15264]
 gi|302192413|gb|ADK99984.1| transcriptional regulator, XRE family [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 67

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +  +    N + + LA   G+   + N  +    +     PS    FKI     + 
Sbjct: 3  NRLKVLRAERNWSQADLAAALGVSRQTVNALETGRYD-----PSLPLAFKIARVFEQP 55


>gi|256377557|ref|YP_003101217.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921860|gb|ACU37371.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
           43827]
          Length = 737

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 47/166 (28%), Gaps = 4/166 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++  ++ R      LT   L+  +G+   + ++ +    +   R  +   +   L  T  
Sbjct: 4   ELGPSLRRARRSAGLTQEQLSAASGISVRTISRLENG-ADENVRLDTLRLLADALGLTQA 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              +L+    +           +          G +         +      +P      
Sbjct: 63  ERRELMAGVVAGEAAVPTGPLAVAAQQLAEVLRGRWLREVEARAAHHP--FPLPVRWRAA 120

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDI-LILNSAIQVNCGDRLL 172
            G       +         + P+   GD+  +++    V  G  ++
Sbjct: 121 PGELVDHWANVLGAPPGAQVRPVALAGDLGQVVDVYRSVPSGRLVV 166


>gi|77745351|gb|ABB02576.1| putative transcriptional regulator [Lactobacillus reuteri]
          Length = 234

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + +   LT   +A   G+   + ++ +        R P  E+  K+    + T+ 
Sbjct: 9  NRIAELRKEKGLTLQQVADAIGVGNNTISRYETG-----KREPKLETWQKLSNYFDVTVY 63

Query: 71 QLLDL 75
           L   
Sbjct: 64 YLQGY 68


>gi|319793072|ref|YP_004154712.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595535|gb|ADU36601.1| transcriptional regulator, XRE family [Variovorax paradoxus EPS]
          Length = 503

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  + E   L+   LA++ GL P+  N+ ++       R  +   + ++ A     I  
Sbjct: 9  RLRSLREERGLSQLALAQQLGLSPSYLNQIEQNQ-----RPLTVPVLLRLHATLGVDIQA 63

Query: 72 LLDLPF 77
            +   
Sbjct: 64 FSEDEE 69


>gi|307545886|ref|YP_003898365.1| hypothetical protein HELO_3296 [Halomonas elongata DSM 2581]
 gi|307217910|emb|CBV43180.1| K09384 hypothetical protein [Halomonas elongata DSM 2581]
          Length = 796

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 60/252 (23%), Gaps = 50/252 (19%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQL 72
           D    R     +  A++AG D  S +  K+   E      +  + I K    T  T  Q 
Sbjct: 540 DDFVIRDGRVVTDAAKRAGQDR-SVHGYKKMLKELPEHARALADQIIKNTYRTLMTRGQK 598

Query: 73  LDLPFSDGRTTEKKEKEIPL-----LYFPPSGSGGFFDSGVFPTGNKWNTVGVP------ 121
               ++    T +             +   +      D    P   +   V         
Sbjct: 599 GCYVYATDPETREYFAAFARAQAATEHADLAEEAETLDGLHLPIVTRDEAVPFERHVPVY 658

Query: 122 -----------------EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI- 163
                            E       +          +    SM      G   +  +   
Sbjct: 659 DLSIAAGEFSEMQIADAEHWVELPDVMRASPDLFVSRVVGESMNRRIPNGAWCLFRTNPG 718

Query: 164 QVNCGDRLLIKPRTGD-------IVAKVLISRR--------GRSIDLMSLNCC--YPVDT 206
               G  ++++ R  +          K   S +         + I L        Y    
Sbjct: 719 GTRQGKVVVVQHRAIEDPDHGGSFTVKQYQSEKVEEYGEFVNQRIVLKPQTNAFGYKDIV 778

Query: 207 V--EMSDIEWIA 216
           +  E+ D++ I 
Sbjct: 779 LEDELEDLKVIG 790


>gi|304405221|ref|ZP_07386881.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304346100|gb|EFM11934.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 127

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I  + E+   T    +   G+   + +  ++       R P TE++ K     N 
Sbjct: 2  NIGTRIAHLREQRGWTQEQTSHSLGISRAALSHYEKN-----RREPDTETLTKFADLFNV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90
          TI  L+       +  + + +E 
Sbjct: 57 TIDFLVGRTNKSEQVLDPQVREF 79


>gi|304384795|ref|ZP_07367141.1| XRE family transcriptional regulator [Pediococcus acidilactici
          DSM 20284]
 gi|304328989|gb|EFL96209.1| XRE family transcriptional regulator [Pediococcus acidilactici
          DSM 20284]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K+ + I  + E  +LT + LAR+  +D ++ NK +        R  S+E + K+    
Sbjct: 3  QNKLSKRIVDLRESMDLTQTELARRLKIDKSAMNKIENGT-----RKVSSEELNKLSDIF 57


>gi|303239088|ref|ZP_07325618.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302593426|gb|EFL63144.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 67

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              K++ + I +  +R  ++   LA  AG      ++ +        R PS + ++ I 
Sbjct: 1  MPIRKEVGQNIRKERDRKRMSQEELAGLAGTTQEYISRIENGT-----RNPSMDLLYNIA 55

Query: 63 AATNET 68
           A    
Sbjct: 56 GALKCP 61


>gi|294817496|ref|ZP_06776138.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326446175|ref|ZP_08220909.1| XRE family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|294322311|gb|EFG04446.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 765

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +  +  + +  +     L+   LA  AGL   +    +R    G  R  S +++ +
Sbjct: 1  MTRSTPGEFGQRLRALRLGAGLSQEQLAHSAGLSVRALANMERGRTTGPQRQ-SVQALAR 59

Query: 61 IL 62
           L
Sbjct: 60 AL 61


>gi|269216373|ref|ZP_06160227.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
 gi|269130632|gb|EEZ61710.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
          Length = 103

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   + +++   +        LT S LA +AG+        +    +G         +  
Sbjct: 1  MKVTTTEQLGSIVRNARAELGLTQSQLAAEAGVSRRLIAAVE----DGSAANVGFGRVLA 56

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          I +A   ++C   DLP       E++  E  LL    +
Sbjct: 57 ICSALGISMCLGEDLPSRPLPPAEERLSEKALLAGSAA 94


>gi|300774987|ref|ZP_07084850.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC
          35910]
 gi|300506802|gb|EFK37937.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC
          35910]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   + ++ +R+N + + +A K  +   ++NK +    +     PS + + KI       
Sbjct: 3  LGTKLKQLRQRNNWSQAEVAYKLDISQPAYNKWESDQGK-----PSLDKLGKIAEVFEIE 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLY 94
          I  L +   +   +    E    +  
Sbjct: 58 IQDLFESEGNVIISNNTFENSNIVYP 83


>gi|255283609|ref|ZP_05348164.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
 gi|255265871|gb|EET59076.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
          Length = 111

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +   I   I +  E   +T   LA K G+        +R       + P  E++ K
Sbjct: 1  MEDKTMHGIGRRIQKCREDAKMTQEQLAEKVGISWNYLGAIERET-----KTPKLETLIK 55

Query: 61 ILAATNETICQ 71
          I+ A   +   
Sbjct: 56 IVNALGVSADD 66


>gi|210632447|ref|ZP_03297375.1| hypothetical protein COLSTE_01272 [Collinsella stercoris DSM
          13279]
 gi|210159542|gb|EEA90513.1| hypothetical protein COLSTE_01272 [Collinsella stercoris DSM
          13279]
          Length = 83

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   +D M  +  +T + LA++ GL   +  + K   ++G  R+ S   +   L     
Sbjct: 2  QIVMRLDVMMAKRKMTVTQLAKETGLSAVNITRIKNGRLQG-IRFSSLVLLCDALHCKPG 60

Query: 68 TICQLLDLPFSDGRTTEKKEK 88
           +   +     +       E+
Sbjct: 61 DLIDYMSDEEFEEEFGYPPER 81


>gi|134099786|ref|YP_001105447.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133912409|emb|CAM02522.1| transcriptional regulator, XRE family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   +  + ER  L+ S +AR++G+   + ++ +      
Sbjct: 2  LAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNP 41


>gi|78485682|ref|YP_391607.1| XRE family transcriptional regulator [Thiomicrospira crunogena
          XCL-2]
 gi|78363968|gb|ABB41933.1| transcriptional regulator, XRE family [Thiomicrospira crunogena
          XCL-2]
          Length = 198

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 1  MTSFSHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
          M+   H+     I + I+   ++  LT + +A ++G+     +K +   +      PS +
Sbjct: 1  MSEKEHQTLDLHIGKIINNARKKQGLTIADIAEQSGISRGMLSKIENGQV-----SPSLD 55

Query: 57 SIFKILAATN 66
          S+ KI     
Sbjct: 56 SLLKISRTLG 65


>gi|89896340|ref|YP_519827.1| hypothetical protein DSY3594 [Desulfitobacterium hafniense Y51]
 gi|89335788|dbj|BAE85383.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 18/46 (39%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          M +    K+   I ++ +   LT   +A    +   + +K +R   
Sbjct: 1  MITMDCAKVGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLG 46


>gi|307243365|ref|ZP_07525525.1| toxin-antitoxin system, antitoxin component, Xre family
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493257|gb|EFM65250.1| toxin-antitoxin system, antitoxin component, Xre family
           [Peptostreptococcus stomatis DSM 17678]
          Length = 104

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 5/98 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +  N+T + LA +  L  ++ +K +   +E     PS + +  +      +
Sbjct: 4   LGNRIKLLRKEFNMTQTDLANRLNLTKSNISKYENGIVE-----PSLDILRSMSDLFEVS 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +  LL                   +          F  
Sbjct: 59  VDYLLGRTNIRNHPETFAAHTDEDMSDEAKAELENFKE 96


>gi|258507369|ref|YP_003170120.1| transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|257147296|emb|CAR86269.1| Transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|259648728|dbj|BAI40890.1| putative transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 100

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          A+    +   L+   LA K+G+  T+  + ++          S E++ KI  A  
Sbjct: 44 AVLEARQNAGLSQQELANKSGVPKTTIARIEQGNNT------SIETLTKIANALG 92


>gi|256379464|ref|YP_003103124.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255923767|gb|ACU39278.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 79

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 3  SFSHKKIWEAIDRMA-ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               ++  +I  +   R  +T + LA + G+   +    ++         PS E  F+I
Sbjct: 1  MVKPTRVTNSIRSLRFARDGMTQAELAERVGVTRQTVIAIEQGRY-----SPSLEMAFRI 55

Query: 62 LAATNETICQLLDLPFSDGRTTEK 85
                 +  +   P  D    E 
Sbjct: 56 ARVFKVPLDDVFHYPEGDVGEGET 79


>gi|238916178|ref|YP_002929695.1| hypothetical protein EUBELI_00212 [Eubacterium eligens ATCC
          27750]
 gi|238871538|gb|ACR71248.1| Hypothetical protein EUBELI_00212 [Eubacterium eligens ATCC
          27750]
          Length = 98

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +  AI       N+T   LA + G++    +K +        R PS   + ++  
Sbjct: 29 DVIRAIVDARTSQNMTQKELAERTGINQADISKLENGT-----RNPSVNLLKRLAD 79


>gi|284033097|ref|YP_003383028.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283812390|gb|ADB34229.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 801

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + +      LT  GLA KAGL   + +  +R       R P   ++  +  A  
Sbjct: 6  LGDLLRQFRTAAGLTQGGLAEKAGLSEQAVSLLERGTR----RRPRIATVHALAEALG 59


>gi|225873562|ref|YP_002755021.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793885|gb|ACO33975.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
          Length = 63

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +      + + LA++ G+   S N  +    +     PS    FK+     
Sbjct: 3  NRLRDLRAERGWSQADLAQELGVSRQSVNAIETGRFD-----PSLPLAFKLARLFG 53


>gi|254475876|ref|ZP_05089262.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
 gi|214030119|gb|EEB70954.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
          Length = 286

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            ++R      L+ S LAR  G+D ++ ++      +   R P+   +    AA   +   
Sbjct: 17  RLNRALADSGLSQSALARAIGVDRSTISQLL---TDEGARLPNAHVVGACAAALGVSADW 73

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPS-GSGGFFDSGVFPTGNKWNTVG 119
           LL L        +     + +   P +      F       G K   V 
Sbjct: 74  LLSLSERPENAADLVAASLTMSAAPRALVDERIFGWHQEAEGYKIRHVP 122


>gi|168212390|ref|ZP_02638015.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|170716178|gb|EDT28360.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
          Length = 180

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + ++ ++  LT   LA   G+  +  +  +         + + E++   L    ++
Sbjct: 3  IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALATSLKLDLKS 60

Query: 69 ICQLLDLPFSDGRTTEKKE 87
                L          +E
Sbjct: 61 FFDDTLLEEDYYLKPLSEE 79


>gi|168206199|ref|ZP_02632204.1| transcriptional regulator, MerR family [Clostridium perfringens E
          str. JGS1987]
 gi|170662344|gb|EDT15027.1| transcriptional regulator, MerR family [Clostridium perfringens E
          str. JGS1987]
          Length = 263

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I    +  NL+   LA K+GL   + +  +        R P+   + KI  A   
Sbjct: 2  NVGDRIKYFRKAENLSQDELASKSGLSRNAISNYELN-----KRQPNIVVLKKIADALKV 56

Query: 68 TICQ 71
           I  
Sbjct: 57 DIDD 60


>gi|118468644|ref|YP_885309.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
 gi|118169931|gb|ABK70827.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
          Length = 478

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/209 (7%), Positives = 43/209 (20%), Gaps = 37/209 (17%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRSERGFSQAALAQMLDISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS--- 125
                    +      ++      L           D            V +        
Sbjct: 61  ATFFSPQDDTRLVAELREVTLDRDLGASDVDLTEVADMVASHPKLARAMVNLHRRYRLAT 120

Query: 126 -----PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---------GD-- 169
                     Y+  +           +   + +    +                  GD  
Sbjct: 121 TQLAAATEDRYSDGSGSGAITMPHEEVRDYFYERQNYLHELDTAAEDLTARMRMHSGDLA 180

Query: 170 -------------RLLIKPRTGDIVAKVL 185
                        R++ +   G+ V    
Sbjct: 181 AELTNRLTSVHGVRVVRRIDMGETVLHRY 209


>gi|9634643|ref|NP_038317.1| ORF16 [Streptococcus phage 7201]
 gi|7248473|gb|AAF43509.1|AF145054_17 ORF16 [Streptococcus phage 7201]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 34/137 (24%), Gaps = 10/137 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I ++ +   LT + LA   G+   +    +++G        S + + ++      +I
Sbjct: 1   MNRIKQLRKSRKLTQAELADLIGVTKRTIIHWEKYGFS------SADKLQELADCFEVSI 54

Query: 70  CQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                 D+  +      K  +               +       G   +    P      
Sbjct: 55  SYLLDYDINNTFSELITKINEWAISHGLDKGNPKIEWMKVTEEVGEIRDVFLRPSDFENP 114

Query: 128 NGIY--AIQTQDTRHKT 142
                 AI         
Sbjct: 115 EMALKDAIGDSIVTLVV 131


>gi|83720019|ref|YP_443629.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83653844|gb|ABC37907.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 80

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 1  MTSFSHKK-------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
          M + S  +       +  AI R+ +   L+   LA  AG+D +   + +R          
Sbjct: 1  MPNLSSSRQHPTLVALGRAIRRIRKDRGLSQEQLALTAGIDVSYLGRVERGDNNA----- 55

Query: 54 STESIFKILAATNETI 69
          S  ++  I  A   T+
Sbjct: 56 SVLALHYIAEALGMTM 71


>gi|227873147|ref|ZP_03991438.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227840978|gb|EEJ51317.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 300

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          KI + I    +   +T   LA K G+   S +K +R  
Sbjct: 5  KIGKYISEKRKNLGMTQKQLAEKIGMSDKSVSKWERGI 42


>gi|182416964|ref|ZP_02625290.2| putative phage repressor [Clostridium butyricum 5521]
 gi|237666135|ref|ZP_04526122.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182379140|gb|EDT76642.1| putative phage repressor [Clostridium butyricum 5521]
 gi|237658225|gb|EEP55778.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 198

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I +  E  NL+   L+++ G   ++  + +   I  R      E + K L     
Sbjct: 9  EIVARIKKRREELNLSYEDLSKRTGFGSSTLQRYETGAIN-RIPIDRFEELAKGLEIEPY 67

Query: 68 TICQLLDLP 76
           +    +  
Sbjct: 68 KLMGWDEDY 76


>gi|166030836|ref|ZP_02233665.1| hypothetical protein DORFOR_00516 [Dorea formicigenerans ATCC
          27755]
 gi|166029418|gb|EDR48175.1| hypothetical protein DORFOR_00516 [Dorea formicigenerans ATCC
          27755]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQ 71
          I  + +  N+T + LA++ G+  +     +     G  R  S  E + +I   +   +  
Sbjct: 4  IKELRKEKNITVAELAKELGISQSMLTNYENG--NGTPRDESIWEKLSQIFGVSKSHVMG 61

Query: 72 LLDLPF 77
          L     
Sbjct: 62 LTTDIE 67


>gi|116754686|ref|YP_843804.1| XRE family transcriptional regulator [Methanosaeta thermophila PT]
 gi|116666137|gb|ABK15164.1| transcriptional regulator, XRE family [Methanosaeta thermophila PT]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 4/105 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + +      ++ + L+   G+ P+  +  +     GR R P    + KI+ A  +  
Sbjct: 29  GETLRKWRRNFGISQTELSNYLGISPSVISDYE----SGRRRSPGILIVSKIIDALLKID 84

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                       +       +  +      +     +      + 
Sbjct: 85  ELRGCNVLRAYESMFGDMVGLSAICSVCEYARPVTLAEFMAEIDA 129


>gi|330469393|ref|YP_004407136.1| helix-turn-helix domain-containing protein [Verrucosispora maris
          AB-18-032]
 gi|328812364|gb|AEB46536.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032]
          Length = 186

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  A+ +  +R  ++ + LAR+AG+  ++ ++ +          PS E+++ +  A +  
Sbjct: 12 IAAALRQERQRVGISLTELARRAGIAKSTLSQLEAGLGN-----PSMETLWALCVALDIP 66

Query: 69 I 69
           
Sbjct: 67 F 67


>gi|312126603|ref|YP_003991477.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776622|gb|ADQ06108.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 119

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  +     L+   L +   +   +    +       +R P+ E++ K+      TI 
Sbjct: 3  NRIRELRLERGLSQEELGKVLNVSGRTIGHYENG-----SREPTPEALNKLADFFGVTID 57

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           LL          +  + ++       
Sbjct: 58 YLLCRTDVRSTEKQDTKDKLQTPADVN 84


>gi|270291965|ref|ZP_06198180.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|270279493|gb|EFA25335.1| conserved hypothetical protein [Streptococcus sp. M143]
          Length = 165

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +  + +    +   LA +  +   S +K +   +      P  E I ++      
Sbjct: 2   KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           T   LL    S+  +T    +E    Y+    S G +     
Sbjct: 57  TTDYLLLDENSEKASTAVILEEDKDKYYKEVKSYGLWQMIYI 98


>gi|251778373|ref|ZP_04821293.1| transcriptional regulator, Cro/CI family [Clostridium botulinum
          E1 str. 'BoNT E Beluga']
 gi|243082688|gb|EES48578.1| transcriptional regulator, Cro/CI family [Clostridium botulinum
          E1 str. 'BoNT E Beluga']
          Length = 160

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I +  E  +LT   L +  G+  ++  K +     G  R  S  ++ K L  +  
Sbjct: 2  EIKDIIRKRREELDLTYEQLGKIVGVGKSTVRKWETGI-IGNLRSDSILALAKGLNLSPS 60

Query: 68 TICQLLDLPFSD 79
          T+    +   + 
Sbjct: 61 TLMGWTEEENTY 72


>gi|239934199|ref|ZP_04691152.1| putative telomere-associated protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291442643|ref|ZP_06582033.1| telomere-associated protein [Streptomyces ghanaensis ATCC 14672]
 gi|291345538|gb|EFE72494.1| telomere-associated protein [Streptomyces ghanaensis ATCC 14672]
          Length = 748

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 22/80 (27%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            R+ + H LT   +A    +   + +  +        R P  E+  ++L    E      
Sbjct: 25  KRLRQAHGLTLDEVAAALKVRRATVSGWESAKKPTEPRGPEREAYARLLKQLAELYPAPS 84

Query: 74  DLPFSDGRTTEKKEKEIPLL 93
            +               P  
Sbjct: 85  AMEGPTAPPVPANLTAPPAP 104


>gi|269123363|ref|YP_003305940.1| helix-turn-helix domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314689|gb|ACZ01063.1| helix-turn-helix domain protein [Streptobacillus moniliformis DSM
           12112]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 64/213 (30%), Gaps = 21/213 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I +  +  N+    LA+  G+ P   N   +       R  S + I KI+     + 
Sbjct: 5   GEVICKYLKIKNINQIFLAKNLGITPQYVNGIIKN-----KRSASKKVIDKIIKFLKISD 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             +  +   +        K+  +     +    +     +  G                 
Sbjct: 60  EDIDMIKKYEIFKKTGVIKKEAVNIKIEAIYTDYGYVEEYKEGLII--------LEEFGD 111

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--NCGDRLLIKPRTGDIVAKVLIS 187
           IY+        + +  ++   +  GD +++     +     ++  +     +I    +  
Sbjct: 112 IYS---DCYIIRIETENLN-KFCYGDYVVIKKEKDILTEYFNKYFLVKIDDEIDFCKIEK 167

Query: 188 RRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219
                + L  LN       + ++  IE I  I+
Sbjct: 168 I-DDKLLLTYLNKNKGKKIIRVNKKIEIIGTII 199


>gi|237718064|ref|ZP_04548545.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|293370031|ref|ZP_06616598.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides ovatus SD CMC 3f]
 gi|299147755|ref|ZP_07040818.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides sp. 3_1_23]
 gi|229452705|gb|EEO58496.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|292634949|gb|EFF53471.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides ovatus SD CMC 3f]
 gi|298513938|gb|EFI37824.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides sp. 3_1_23]
          Length = 134

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I+R+     +T + L    G+   + +K ++            E + +I +A   T
Sbjct: 12  LGRKIERVRRLRGMTQAELGDLLGITKQAVSKIEQTEK------FDDERLGEIASALGVT 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +  L                E   +    S +G       FP         
Sbjct: 66  VDGLKSFNEETILYNTNNFYENCGVKSAVSNTGNNQTFNSFPVEQVIEIFE 116


>gi|167377813|ref|XP_001734554.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165903891|gb|EDR29282.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 125

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 2   TSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           T   HK++       I R  +  +LT   LA+K    P +    +          PS + 
Sbjct: 55  TPLVHKQVSHKVSLEIQRARQEKHLTQKELAQKINEKPQTIADYESGRAI-----PSQQV 109

Query: 58  IFKILAATN 66
           + K+     
Sbjct: 110 LAKLERVLG 118


>gi|163732391|ref|ZP_02139837.1| DNA-binding protein [Roseobacter litoralis Och 149]
 gi|161394689|gb|EDQ19012.1| DNA-binding protein [Roseobacter litoralis Och 149]
          Length = 71

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++   + +  ++   +  GLA + GL  T  +  +R       R P+   + +I  A 
Sbjct: 4  RQRVGRNLKKYRKQAGFSQEGLALECGLHRTYVSGVERGV-----RNPTVVVLERIAEAL 58


>gi|75910246|ref|YP_324542.1| molybdate metabolism transcriptional regulator [Anabaena variabilis
           ATCC 29413]
 gi|75703971|gb|ABA23647.1| transcriptional regulator of molybdate metabolism, XRE family
           [Anabaena variabilis ATCC 29413]
          Length = 376

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 2/133 (1%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +  R  ++   LA  AG+   + +  +            T  + K L    E
Sbjct: 6   NICNNIKSIRTRLGMSQQDLANIAGVTRQTISGVESGQYA--PSVAITLRLAKALGCQVE 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +  L D          K       L    +  GG + +        +    +P      
Sbjct: 64  NLFWLEDDLPEIEAVLAKPVPTGQQLRVSLAKVGGQWIAYPLVGKEAFRMEMIPADGRAE 123

Query: 128 NGIYAIQTQDTRH 140
           +  +  + Q    
Sbjct: 124 SQTHTNKVQVRLL 136


>gi|42525956|ref|NP_971054.1| DNA-binding protein [Treponema denticola ATCC 35405]
 gi|41816006|gb|AAS10935.1| DNA-binding protein [Treponema denticola ATCC 35405]
          Length = 91

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 3  SFSHKKIWEAIDRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           F  ++    I+R+ +      L+   LA +A +     N  +        R PS +++ 
Sbjct: 1  MFLREQQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETG-----KRTPSLDTLL 55

Query: 60 KILAATNETI 69
          KI  A N   
Sbjct: 56 KICHALNINP 65


>gi|325265475|ref|ZP_08132198.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324029333|gb|EGB90625.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 206

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + ++ ++ NLT   LA +  +  T+ +K +         +P+ ES+  I      TI 
Sbjct: 5  EKLQQLRKKKNLTQEQLAEQLYVSRTAVSKWESGRG-----YPNIESLKCISKLFEVTID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLY 94
          +LL           +    +  +Y
Sbjct: 60 ELLSSDELITLAECENRSNMKKIY 83


>gi|260618475|gb|ACX47365.1| XRE [Acinetobacter johnsonii]
          Length = 103

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + +AI +  +  NLT   L +  G+     +K +    + R      E+I K+  A N
Sbjct: 32 ELLGDAIKQARKERNLTQEELGKLVGVQKAQISKLENSLTDAR-----FETIIKVFKALN 86


>gi|239995272|ref|ZP_04715796.1| putative phage repressor [Alteromonas macleodii ATCC 27126]
          Length = 95

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRLLIKPRTGDIVAKVL-ISRRGRSIDL 195
             +   +SMLP    GD +         +  G  +++K  T  ++ K +       +  L
Sbjct: 4   IMRVTGSSMLPSLSDGDFVCAMRWPFRWLRSGQIVVVKSSTYGVIIKRVDHVNTDGTFTL 63

Query: 196 MSLNCCY 202
              N  +
Sbjct: 64  TGDNKAH 70


>gi|291299563|ref|YP_003510841.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290568783|gb|ADD41748.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 186

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I  A+ R  +R  L+ S +A++AG+  ++ ++ +          P  E+++ +  A N
Sbjct: 10 EVIAHALRRERDRAGLSLSEVAKRAGIAKSTLSQLEAGSGN-----PGVETLWALSVALN 64

Query: 67 ETI 69
             
Sbjct: 65 VPF 67


>gi|228477777|ref|ZP_04062405.1| conserved domain protein [Streptococcus salivarius SK126]
 gi|228250469|gb|EEK09683.1| conserved domain protein [Streptococcus salivarius SK126]
          Length = 69

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E + +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIKTNLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYN-----PSLEMALKIA 55

Query: 63 AATNETICQ 71
             N+ + +
Sbjct: 56 QVFNKQVEE 64


>gi|259908398|ref|YP_002648754.1| transcriptional repressor DicA [Erwinia pyrifoliae Ep1/96]
 gi|224964020|emb|CAX55526.1| HTH-type transcriptional regulator DicA [Erwinia pyrifoliae
          Ep1/96]
 gi|283478343|emb|CAY74259.1| HTH-type transcriptional regulator dicA; Repressor protein of
          division inhibition gene dicA [Erwinia pyrifoliae DSM
          12163]
          Length = 133

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 5/85 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +   I E I    +    T   LA+   +   S ++ +R   E   +     ++ K
Sbjct: 1  MKNLT---IGERIRNRRKEMKFTQRSLAKALKISHVSVSQWERDDSEPTGKNLF--ALTK 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEK 85
          IL  T   +            T   
Sbjct: 56 ILQCTPTWVLFGDQNQSPQEPTDTP 80


>gi|186475021|ref|YP_001856491.1| XRE family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184191480|gb|ACC69445.1| transcriptional regulator, XRE family [Burkholderia phymatum
          STM815]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++ +++ R+    N +   LA +  LD +     +R       R  S +++ K+  A 
Sbjct: 14 RQQLADSLRRLRAERNWSQEELAARCELDRSFVAHVERGA-----RNISLDNVEKLANAF 68

Query: 66 NETICQLLDLPFS 78
             I  L      
Sbjct: 69 GVGIADLFLRRDP 81


>gi|170742019|ref|YP_001770674.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196293|gb|ACA18240.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 14/162 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  + +   LT   +A + G+     ++ +R   +          + +I       
Sbjct: 22  LGEQIRALRKIKGLTLQQIAGEIGVSIGYLSQIERNRSK-----LPIGVLKRIATILGVQ 76

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPH 127
           +              +                 G  +  + P  N    V +  I     
Sbjct: 77  LSWFFQPQTLGPPEEQDFIVRAGRRRRMSFTGTGIAEELLSPNLNGPLEVLLSTIAPGSD 136

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           +  Y+    +       T         D+ I +   ++  GD
Sbjct: 137 SDFYSHDGMEAGLVLAGTL--------DLWIGDRTFRLEVGD 170


>gi|150390409|ref|YP_001320458.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens
           QYMF]
 gi|149950271|gb|ABR48799.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens
           QYMF]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I R+   + LT   LA++  L     +K +R         PS  ++  IL A   
Sbjct: 2   DIGEKIRRLRILNELTQDELAQRCDLTKGFISKIERNIT-----SPSIATLMDILEALGI 56

Query: 68  TICQLLDLP-FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            + +  +         T++   E          S    ++           + +P+  S 
Sbjct: 57  DVNKFFNEDVQDKIVYTKEDIYESQNEELQHEVSWLIPNAQRNAMEPILIEI-LPQGSSN 115

Query: 127 HNGIYAIQTQDTRHK 141
               +  +      K
Sbjct: 116 IEEPHKGEEFGYVLK 130


>gi|58338178|ref|YP_194763.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM]
 gi|227902636|ref|ZP_04020441.1| XRE family transcriptional regulator [Lactobacillus acidophilus
           ATCC 4796]
 gi|58255495|gb|AAV43732.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM]
 gi|227869542|gb|EEJ76963.1| XRE family transcriptional regulator [Lactobacillus acidophilus
           ATCC 4796]
          Length = 174

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 5/102 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++   +N +   LA K  +   S +K +    +     P  + I  +    + +   L
Sbjct: 48  IAQLRNDNNWSQEELAEKLNVSRQSVSKWESGQAK-----PDLDKIIALSDIFDVSTDYL 102

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           L     +       +    L +           +        
Sbjct: 103 LKDDNEEKSNPSTNKHHFSLSWVQFGRLNSAIWAIAGAIYAI 144


>gi|24378729|ref|NP_720684.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gi|24376595|gb|AAN57990.1|AE014871_15 putative transcriptional regulator [Streptococcus mutans UA159]
          Length = 117

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          E +  +     LT   +A K  +   S+ + +    +     P + ++ K      
Sbjct: 4  ERLKSLRLEAGLTQKQIAEKLEIKQQSYAQWESGRTK-----PRSATLNKFADFFG 54


>gi|21910593|ref|NP_664861.1| putative transcriptional regulator protein [Streptococcus
          pyogenes MGAS315]
 gi|28895718|ref|NP_802068.1| transcriptional regulatory protein [Streptococcus pyogenes SSI-1]
 gi|21904794|gb|AAM79664.1| putative transcriptional regulator protein [Streptococcus
          pyogenes MGAS315]
 gi|28810967|dbj|BAC63901.1| putative transcriptional regulatory protein [Streptococcus
          pyogenes SSI-1]
          Length = 71

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +  R  +  + +A+ AG+   + +  +R         PS     KI     E 
Sbjct: 5  LKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAMKIAKVFQEP 59

Query: 69 ICQLLDLPF 77
          + ++  L  
Sbjct: 60 VEEVFHLVE 68


>gi|325264845|ref|ZP_08131573.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324029834|gb|EGB91121.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 693

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  +    +LT + +A   G+  +++   +        R P  + + KI      ++ 
Sbjct: 8   ERLTALRTGSSLTQTQMAELLGISRSTYANYEVG-----KRTPDLKMLIKIADVFTCSLD 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +L+                +         S G      +P+
Sbjct: 63  ELVGRNTPMPYIGNNCPAAVRETVSGYLPSMGRESMPGYPS 103


>gi|312138238|ref|YP_004005574.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|311887577|emb|CBH46889.1| putative transcriptional regulator [Rhodococcus equi 103S]
          Length = 197

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 7/136 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  + ++   T S LA   G+  ++ ++ +        R P+ E +  +  A  
Sbjct: 13  DAVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQ-----RKPNLELLLPLARAYG 67

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS--GSGGFFDSGVFPTGNKWNTVGVPEIR 124
             + +L+  P +       K          P     GG         G +   V    + 
Sbjct: 68  VPLDELVGAPETGDPRIHLKPITRGGKTIVPLTRRPGGIQAYKHVIPGARGPQVPDLRVH 127

Query: 125 SPHNGIYAIQTQDTRH 140
             +  +Y +  +    
Sbjct: 128 EGYEWLYVLNGKLRLV 143


>gi|310640619|ref|YP_003945377.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2]
 gi|309245569|gb|ADO55136.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2]
          Length = 157

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + +  E   L+ + LA  AG+  +  ++ +          P   ++ KI  A + + 
Sbjct: 7   GTYLKQQREHKQLSINQLADAAGISNSQISRIENGLRG----VPKPSTLRKIADALSVSY 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            +++            ++    L        
Sbjct: 63  TEMMKAAGYWADDDSIEQNPHELYRSTVPEW 93


>gi|308274963|emb|CBX31562.1| hypothetical protein N47_E50740 [uncultured Desulfobacterium sp.]
          Length = 117

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 26/108 (24%)

Query: 3   SFSHKKIWE-AIDRM----------------------AERHNLTPSGLARKAGLDPTSFN 39
             +HK++   A+DR                            +T + +A + G   +   
Sbjct: 1   MLTHKELKARALDRADVKDEYDQLDDEFSLLDQFLKARSAAGITQAEVAERIGTTQSVIA 60

Query: 40  KSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKE 87
           + +    +     PS  ++ K   A    +   +    S  R      
Sbjct: 61  RLESGSGK---HSPSLATLQKYANALGCRLEMKIVKVKSSNREKNHPA 105


>gi|296452101|ref|ZP_06893812.1| transcriptional regulator [Clostridium difficile NAP08]
 gi|296877457|ref|ZP_06901490.1| transcriptional regulator [Clostridium difficile NAP07]
 gi|296259051|gb|EFH05935.1| transcriptional regulator [Clostridium difficile NAP08]
 gi|296431469|gb|EFH17283.1| transcriptional regulator [Clostridium difficile NAP07]
          Length = 144

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +  + + H  T   LA K  +   S  K +          P   S  K+    N  
Sbjct: 5  INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESI-----PDIGSCIKLAKLYNVK 59

Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90
          +  L++            + + 
Sbjct: 60 LDDLVNHSEEKTGIIVPPKGKF 81


>gi|218688918|ref|YP_002397130.1| putative transcriptional regulator from the CI family
          [Escherichia coli ED1a]
 gi|218426482|emb|CAR07310.1| putative transcriptional regulator from the CI family
          [Escherichia coli ED1a]
          Length = 102

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   LT + +A + G   T+  + +     G +  PS  ++ K   AT 
Sbjct: 44 AARKEAGLTQAEVAERMGTKATAITRMESNLASGTS-GPSFATLKKFARATG 94


>gi|139438180|ref|ZP_01771733.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC
          25986]
 gi|133776377|gb|EBA40197.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC
          25986]
          Length = 137

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I R  +   +T + LA   GL   +    +      +      E +  I AA   +
Sbjct: 3  VGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKP-----ELLESIAAALGVS 57


>gi|77165129|ref|YP_343654.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC
          19707]
 gi|254433736|ref|ZP_05047244.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27]
 gi|76883443|gb|ABA58124.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC
          19707]
 gi|207090069|gb|EDZ67340.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27]
          Length = 76

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  +     LT + LA++A ++ +  +K +R   E      +  ++ KI  A + +
Sbjct: 3  VGKNIKGLRIAAGLTQTQLAKEARINQSGLSKIEREENE----SITLPTLRKIAKALDCS 58


>gi|85709529|ref|ZP_01040594.1| hypothetical protein NAP1_11628 [Erythrobacter sp. NAP1]
 gi|85688239|gb|EAQ28243.1| hypothetical protein NAP1_11628 [Erythrobacter sp. NAP1]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + ++ +     LT + +A   G+   +    ++            E I  I      T
Sbjct: 143 LGKRLNTLRRERGLTLAQVADALGVSKPTVWAWEKDKARPLP-----ERIGAIADVLGVT 197

Query: 69  ICQLL 73
              L+
Sbjct: 198 SEDLM 202


>gi|306825744|ref|ZP_07459083.1| helix-turn-helix domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432105|gb|EFM35082.1| helix-turn-helix domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 361

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 50/177 (28%), Gaps = 15/177 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + ++ + E +N+T    A + G+   + +K             S E+  K+   +  ++
Sbjct: 17  GQYVEELIEDYNVTQKEFAERLGVSAKTVSKIVNAEE-----SISKETAHKLAKLSGVSM 71

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L+L  +      +  +E  L            D   F                P   
Sbjct: 72  QTWLNLQNAYDVKVAEIIEERELEEGSEKEICEMIDFKYFKEK----------GYVPDKR 121

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
               +      K    + +      + L+     +      ++      ++ +K + 
Sbjct: 122 YSLKEKIIELRKILGVASIENLTSFNHLVSYRNTREFTTKSIVNSNIMLELASKRVR 178


>gi|295425417|ref|ZP_06818113.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM
           11664]
 gi|295064868|gb|EFG55780.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM
           11664]
          Length = 143

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 6/128 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++      +   LA K  +   S +K +    +     P  + I  +    N +   L
Sbjct: 20  ITQLRNDKKWSQEDLAEKINVSRQSVSKWESGQTK-----PDLDKIIVLSEIFNVSTDYL 74

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFP-PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L     +       +      Y    S       +     G  ++   +  I  P   I 
Sbjct: 75  LKDDEKEINNASTNKHRFNFSYSHLNSAIWTIAVAIYIICGFAFDNWDLSLIIIPVAMIL 134

Query: 132 AIQTQDTR 139
           ++ T+   
Sbjct: 135 SVLTRLFI 142


>gi|238063802|ref|ZP_04608511.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237885613|gb|EEP74441.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 214

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 42/136 (30%), Gaps = 9/136 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  +  +   T + L+   G+  ++ ++ +        R P+ E +  +  A   
Sbjct: 32  DVGPRLRALRRQRETTLAELSAATGISVSTLSRLESGT-----RRPTLEQLLPLARAHGV 86

Query: 68  TICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
           T+  L+  P +       +        +L       G      V P G+        +  
Sbjct: 87  TLDDLVGAPPTGDPRIHLRPVTRHGMIMLPLTRRAGGIQAYKLVIPAGSGRREPDR-QTH 145

Query: 125 SPHNGIYAIQTQDTRH 140
             +  +Y +  +    
Sbjct: 146 EGYEWLYVLNGRLRMV 161


>gi|229187999|ref|ZP_04315094.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1]
 gi|228595479|gb|EEK53204.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1]
          Length = 116

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  + +   +T   L    G+   + +  ++       + P  ES+ KI      T
Sbjct: 2  IGEKIKELRKNSKITQEQLGNAIGVSKMAISYFEKG-----KKSPGRESLEKIADYFGVT 56

Query: 69 ICQLLDLPFSDGRTTEKK 86
             LL          E+ 
Sbjct: 57 TDYLLGRSEDPELNEEEN 74


>gi|227873856|ref|ZP_03992078.1| helix-turn-helix motif protein [Oribacterium sinus F0268]
 gi|227840282|gb|EEJ50690.1| helix-turn-helix motif protein [Oribacterium sinus F0268]
          Length = 331

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +++  +   LA K  +   S +K +     G    P    I K+    + +
Sbjct: 3  LADKIIELRKKNGWSQEDLAEKLDVSRQSISKWE-----GAQSIPDMNKILKLSEVFSVS 57

Query: 69 ICQLLDLPFSDGRTTEKK 86
             LL          E  
Sbjct: 58 TDYLLKDEIELDSPGEAP 75


>gi|164688807|ref|ZP_02212835.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM
           16795]
 gi|164602283|gb|EDQ95748.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM
           16795]
          Length = 364

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 5/113 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I +      +T   LA   G+  +S +K +         +P    + ++    N 
Sbjct: 5   NIGKNITKFRRSKGITQDELASYIGVSKSSVSKWENSIT-----YPDIMLLPQLATLFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++ +L+       +   +K        F  + S              ++    
Sbjct: 60  SLDELMGYEPQLIKEDIQKIYFELAQEFAQNDSNEVLKKCEEYIKKYYSCFEF 112


>gi|154498955|ref|ZP_02037333.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC
          29799]
 gi|150271795|gb|EDM99021.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC
          29799]
          Length = 115

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
           + I   I +  E   LT + LA   G+     ++ +R   + +
Sbjct: 7  EEIIGTNIAKYREAAGLTQAALAEIIGISTAFVSRVERGQKKMK 50


>gi|71279897|ref|YP_269962.1| DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71145637|gb|AAZ26110.1| DNA-binding protein [Colwellia psychrerythraea 34H]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R+  +H LT + LA  A +   +    +          PS   + K+  A   +
Sbjct: 5  ISEGIKRLRAQHKLTQTKLADMADIPRATLANMESEQSN-----PSITLVVKVAQALGVS 59

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          +  L+    +      +K+  I  L  
Sbjct: 60 VDDLISRQSAHVTEVCRKDMPITQLDD 86


>gi|322805162|emb|CBZ02726.1| transcriptional regulator [Clostridium botulinum H04402 065]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 19/215 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       I + I    +   +T   LA   G+   S +K +         +P    + +
Sbjct: 1   MREL---NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSS-----YPDILFLPE 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    N ++ +LL       +   KK        F         +         ++    
Sbjct: 53  LATYFNISVDELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKYYSCFPF 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                     Y+          ++ ++     +  IL+     + +     +    T + 
Sbjct: 113 LLSIIQLLLNYSN-------LIKNDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 165

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +A++ +      I L+  N   P       D+  I
Sbjct: 166 LAEMTLGNSEEVIRLL-DNKLDP---YRGDDVILI 196


>gi|318081943|ref|ZP_07989252.1| hypothetical protein SSA3_35774 [Streptomyces sp. SA3_actF]
          Length = 167

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I  + E   L+ S LAR++GL   + +  +        R P+ E+++ +  A  
Sbjct: 2  GARIRELREARALSLSALARRSGLGKATLSGLEAGT-----RNPTLETLYAVTTALG 53


>gi|257440012|ref|ZP_05615767.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257197364|gb|EEU95648.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 65

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +       ++T   LA  AG+   + N  ++             SI KIL  T + +  
Sbjct: 7  LKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCR--SICKILGKTLDELFW 63


>gi|254927431|gb|ACT85948.1| MucA [Klebsiella pneumoniae]
          Length = 99

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
           H+            +    SM       GD+L+++ A +   G  ++      +   K
Sbjct: 43  HDYCVRRPAATYFLRVSGDSMRDARIHDGDVLVVDRAEEPRHGSIVIASID-NEFTVK 99


>gi|187777701|ref|ZP_02994174.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC
           15579]
 gi|187774629|gb|EDU38431.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC
           15579]
          Length = 130

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  L+   L  K  +   + +K +          P  E +  +      ++ +L
Sbjct: 7   LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +    +   T  +      L     S    
Sbjct: 62  VMDVKAKESTKTEPLVMNRLETIIDSIDRE 91


>gi|170700683|ref|ZP_02891679.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           IOP40-10]
 gi|170134409|gb|EDT02741.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           IOP40-10]
          Length = 130

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  A+  + ER  L+   L+  + +D    N+ +          P+ +++ K++ A    
Sbjct: 6   LGAALRALRERRTLSQRELSELSDVDNAYINRLESGEKT----NPTPDTLAKLIRALKAP 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--NTVGVPEIRSP 126
                 + +      +  +  + L+ +    +    D  +   G ++  +    PE    
Sbjct: 62  ERDAAMVKWL----ADHADASVELVKYVLDHAEIPVDYFISAAGMRFRGDARPTPEKLIE 117

Query: 127 H 127
            
Sbjct: 118 R 118


>gi|169794442|ref|YP_001712235.1| putative HTH-type transcriptional regulator [Acinetobacter
           baumannii AYE]
 gi|169147369|emb|CAM85230.1| putative HTH-type transcriptional regulator [Acinetobacter
           baumannii AYE]
          Length = 210

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 17/144 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +   H  +   I  + + H+L+   LA +AG+   +    +   +       S   +  I
Sbjct: 33  SVLQH--VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 85

Query: 62  LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            A        ++  P               +K+E +   L   PS S     +     G 
Sbjct: 86  AAVLGVDFRTIVSAPELKEHALVNALAWQGQKEESKATFLASVPSRSQVELWTWSLAVG- 144

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137
             + V   +       IY ++ + 
Sbjct: 145 -ESYVAEADAEGWQELIYVLEGEL 167


>gi|167758401|ref|ZP_02430528.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704]
 gi|167664298|gb|EDS08428.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 35/137 (25%), Gaps = 16/137 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   +  +    NLT   LA +A L     ++ +R         PS  ++  IL     
Sbjct: 2   EIGPKLRELRIAKNLTQEELADRAELSKGFISQLERDLT-----SPSIATLVDILQCLGT 56

Query: 68  TICQLL---------DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           TI +                     + +         P +         +          
Sbjct: 57  TINEFFSEDPEEQVVFHYEDYFEKEDTELLNKTEWIIPNAQKNMMEPIRLTLKPGGSTYR 116

Query: 119 GVPEIRSPHNGIYAIQT 135
            VP         Y ++ 
Sbjct: 117 DVP--HEGEEFGYVLKG 131


>gi|160944249|ref|ZP_02091478.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium
          prausnitzii M21/2]
 gi|313113217|ref|ZP_07798837.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium cf. prausnitzii KLE1255]
 gi|158444431|gb|EDP21435.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium
          prausnitzii M21/2]
 gi|295103725|emb|CBL01269.1| transcriptional regulator, XRE family [Faecalibacterium
          prausnitzii SL3/3]
 gi|310624459|gb|EFQ07794.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 93

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I +A+    +   LT   L+ + G+     +K +R         PS  ++ ++ A     
Sbjct: 30 IAQAMIDARKESGLTQKQLSERTGIAQADISKLERGNAN-----PSLRTLQRLAAGMGMN 84


>gi|1871451|dbj|BAA11167.1| C5-cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|3421011|emb|CAA76526.1| M.Ecl18kI (DNA-methyltransferase) [Enterobacter cloacae]
          Length = 379

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 5/137 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDP---TSFNKSKRFGIEGRNRWPSTESIFKILA 63
             I   I    ER ++T    A   GL      +  + +R     +      +++     
Sbjct: 3   DNIAATIKEKRERLHMTQKEFADALGLSKYGDRTIRRWERGET--KPTGAELKAVMDFPD 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  +       D        +         +                 N    P+ 
Sbjct: 61  TPPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHANYGDFPDG 120

Query: 124 RSPHNGIYAIQTQDTRH 140
                    I   +   
Sbjct: 121 DITKIDEKDIPDHEILV 137


>gi|330897428|gb|EGH28847.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 99

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L     T+
Sbjct: 4  GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLEGIPMTL 58

Query: 70 CQLLDLPFSDGRTTE 84
                    G+   
Sbjct: 59 ADFFTFDQPPGQDQY 73


>gi|320353458|ref|YP_004194797.1| helix-turn-helix domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320121960|gb|ADW17506.1| helix-turn-helix domain protein [Desulfobulbus propionicus DSM
           2032]
          Length = 149

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 7/115 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           KKI   +      + LT   L+   G+   S +  +    +     PS E++  +   T 
Sbjct: 10  KKIGNRLKEFRVENGLTLVQLSELIGISHGSLSGLENNKSK-----PSAETLSNLCLYTE 64

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             I  LL          +   ++  +  F  +      +    P    W  V   
Sbjct: 65  IDIVWLLTGRREKPIERKIPTRKFEI--FEQAEEWLREEVQKNPKKEIWFEVEFE 117


>gi|225571208|ref|ZP_03780206.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM
          15053]
 gi|225160039|gb|EEG72658.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM
          15053]
          Length = 114

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +  +     L+   LA   G+  ++ N  +R       R P+ E++  I    
Sbjct: 14 LRLLRNGRGLSQQELALSLGISKSAVNMYERGE-----RQPNFETLELIADFF 61


>gi|146319855|ref|YP_001199566.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|145690661|gb|ABP91166.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
 gi|292557469|gb|ADE30470.1| Helix-turn-helix motif-containing protein [Streptococcus suis
          GZ1]
          Length = 121

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K++ + I  +    NL+   LA K  +   + +K +          P  + + +
Sbjct: 1  MIM---KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEAT-----PDIDKLVQ 52

Query: 61 ILAATNET 68
          +      +
Sbjct: 53 LAEIFGVS 60


>gi|110802551|ref|YP_699244.1| DNA-binding protein [Clostridium perfringens SM101]
 gi|110683052|gb|ABG86422.1| DNA-binding protein [Clostridium perfringens SM101]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 13/119 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I R+     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2   EIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLIDILDILGT 56

Query: 68  TICQLLDLPFS--------DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            + +      +        D   TE +E +  L++  P+      +  +         +
Sbjct: 57  NLTEFFSEDTNEKIAFSKDDMFETENEELKYNLMWLVPNAQKNDMEPIMITIKPGGQYI 115


>gi|78355603|ref|YP_387052.1| MerR family transcriptional regulator [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218008|gb|ABB37357.1| transcriptional regulator, MerR family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 11/144 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           KK+   I +  E   +T   LA  AGL        +   +     +PS   + KI  A N
Sbjct: 4   KKLGARICKFREERGMTREELAEAAGLGADFITALEEEDL-----YPSIGPLQKIARALN 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT------VGV 120
             +   +D   +      +K      L    + +             K +       + +
Sbjct: 59  VRLGTFMDDEVTRDPIVVRKSGRESDLTMQKARNKRAAFMFHSLGKGKSDRNMEPFFIEI 118

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
               +    + + Q ++       
Sbjct: 119 APEPNEDRQLSSHQGEEFIVVVSG 142


>gi|332360161|gb|EGJ37975.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK1056]
          Length = 169

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 5/106 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 3   KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           T   LL              ++    Y+    S  F+         
Sbjct: 58  TTDYLLLEESDKPEINPVLSEDEKDRYYKEVKSYSFWQVLYIFISA 103


>gi|325266707|ref|ZP_08133383.1| DNA-binding protein [Kingella denitrificans ATCC 33394]
 gi|324981816|gb|EGC17452.1| DNA-binding protein [Kingella denitrificans ATCC 33394]
          Length = 146

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E I R+ E  + +   +A+K  +    + K +R          S   + ++ A    
Sbjct: 5   KINEKIKRLREGKHWSQEEMAQKLNMSKNGYAKIERGETSA-----SLGRLEQVAAVLGI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            +C+LL          + +     +L    +         +     
Sbjct: 60  GLCELLADVCGGRNADDARGSAENVLLLQQARQIIELKDEIIANKE 105


>gi|309389332|gb|ADO77212.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM
          2228]
 gi|309389630|gb|ADO77510.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM
          2228]
          Length = 92

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I + I R    +NLT   LA + G   ++ ++ +          PS E + K+  A  
Sbjct: 31 EIKKQIIRYRIENNLTQKELADRIGTKQSAISRLENDDYN-----PSVEFLDKVAHAFG 84


>gi|293374180|ref|ZP_06620511.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|292647209|gb|EFF65188.1| DNA-binding protein [Turicibacter sanguinis PC909]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 14/175 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I ++ +   L+   LA K  +   + +K +          P TE + ++    N +
Sbjct: 3   LGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAI-----PDTEHVVRLAEVFNVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I  LL        T ++K   + +          F   G F +        V +I +   
Sbjct: 58  IDSLLRGDLKCQPTNQEKCLPVLIGMMVIGLVVSFMMWGTFKSFMLVTIGWVIQIVTIIL 117

Query: 129 GIYAIQ----TQDTRHKTQDTSMLPLYR-----KGDILILNSAIQVNCGDRLLIK 174
            I   +     +    K     ++P +         ++    A        ++  
Sbjct: 118 FIVIHEKPTYKEIYWIKVSSVWLIPPFIVKYLVDQLMIFYPKARPAIFDLIVVSM 172


>gi|288905863|ref|YP_003431085.1| transcriptional regulator, Cro/CI family [Streptococcus
           gallolyticus UCN34]
 gi|288732589|emb|CBI14161.1| putative transcriptional regulator, Cro/CI family [Streptococcus
           gallolyticus UCN34]
          Length = 416

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + R  ++  L  S  A+  G+  +  ++ +        +  S E+  KI +A     C 
Sbjct: 5   YLQRFRKKTGLNQSDFAKTVGISQSLISRYELG-----KKTLSVETFHKIKSAFGYFDCD 59

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
              L +         +    L  F        F  
Sbjct: 60  KDRLRYMIDYLRITFKSVRDLEKFTREYLLIPFRE 94


>gi|326316490|ref|YP_004234162.1| helix-turn-helix domain-containing protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|323373326|gb|ADX45595.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  A+ R  ER  L+ S LA++A +  ++ ++ +          PS E+++ +  A  
Sbjct: 13 LASAVRRERERLGLSVSELAKRARIAKSTLSQLEAGSGN-----PSLETLWALATALG 65


>gi|29171513|ref|NP_808697.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28856006|gb|AAO59063.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 111

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +   L+ + LA   G D    ++ +R         P  E + +I    N  
Sbjct: 2   VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGST-----LPGIEQLIRIATVFNVA 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             +LL       RT     ++          S  + +  
Sbjct: 57  PGELLPGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEM 95


>gi|316941295|gb|ADU75329.1| helix-turn-helix domain protein [Clostridium thermocellum DSM
          1313]
          Length = 374

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
               I   I +M     LT   +A   G+   S +K +         +P    + ++  
Sbjct: 1  MKEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQS-----YPDITFLPQLAT 55

Query: 64 ATNETICQLLDLPFSDGRTTEKK 86
            N +I +L+       +   +K
Sbjct: 56 LFNISIDELMGYEPQMSKEDIRK 78


>gi|227892050|ref|ZP_04009855.1| conserved hypothetical protein [Lactobacillus salivarius ATCC
           11741]
 gi|227866160|gb|EEJ73581.1| conserved hypothetical protein [Lactobacillus salivarius ATCC
           11741]
          Length = 184

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 16/40 (40%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
             +    E   ++ + LAR++G+   S     +   + + 
Sbjct: 121 NRLKIAIENKGISQAELARRSGISRASITGYLKGKYKAKP 160


>gi|284029517|ref|YP_003379448.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283808810|gb|ADB30649.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836]
          Length = 184

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 10/154 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I  ++ R   R  L+ S +A++AG+  ++ ++ +          PS E+++ +  A    
Sbjct: 10  IAGSLRRERARAGLSLSEVAKRAGVAKSTLSQLESGTGN-----PSVETLWALCVALEIQ 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L+D P    +     E            +            + +     P      +
Sbjct: 65  FADLIDPPRPRVQVIRADEGPAIYSEQADYSATLVASCPPNARRDIYRIAVAPGQGRESS 124

Query: 129 GIYAIQTQDTRH----KTQDTSMLP-LYRKGDIL 157
                  +             S  P     GD +
Sbjct: 125 PHMPGTIEHVVLGTGRALVGLSTEPVELNPGDYI 158


>gi|255657067|ref|ZP_05402476.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
          Length = 141

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +  + + H  T   LA K  +   S  K +          P   S  K+    N  
Sbjct: 2  INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESI-----PDIGSCIKLAKLYNVK 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90
          +  L++            + + 
Sbjct: 57 LDDLVNHSEEKTGIIVPPKGKF 78


>gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753]
 gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          ++ I R+ +  ++T   LA++ G++    +K +   IE     PS   + KI +A    +
Sbjct: 3  FDQIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIE-----PSVSQLQKIASALGVPM 57

Query: 70 CQ 71
           +
Sbjct: 58 ME 59


>gi|126180158|ref|YP_001048123.1| XRE family transcriptional regulator [Methanoculleus marisnigri
          JR1]
 gi|125862952|gb|ABN58141.1| transcriptional regulator, XRE family [Methanoculleus marisnigri
          JR1]
          Length = 68

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  +  +  +T   LA++ G+   +    ++         PS +  +K+      TI +
Sbjct: 4  RIRELRAKAGITQEELAQQVGVRRETIVFLEKGKYN-----PSLKLAYKVAHTLGSTIEE 58

Query: 72 LLDLPF 77
          +     
Sbjct: 59 VFTFEE 64


>gi|66394914|ref|YP_239762.1| ORF050 [Staphylococcus phage 85]
 gi|66395932|ref|YP_240267.1| ORF047 [Staphylococcus phage 96]
 gi|189427127|ref|YP_001949803.1| putative repressor protein [Staphylococcus phage phiMR25]
 gi|62635843|gb|AAX90954.1| ORF050 [Staphylococcus phage 85]
 gi|62636353|gb|AAX91464.1| ORF047 [Staphylococcus phage 96]
 gi|189339038|dbj|BAG48102.1| putative repressor protein [Staphylococcus phage phiMR25]
          Length = 108

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/101 (9%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K + E ++++ + +N+T   L+   G+  ++ +   +       R    + +       
Sbjct: 7   RKILSENLEQLMKENNITQVELSEAIGVSQSTISNWLKELK--YPRISKVQQLADYFNVP 64

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
              I +   +          K++  P  +        +   
Sbjct: 65  KSRITEERSIHQETIAGHANKDEFTPEEWEEIENFMQWVRD 105


>gi|125974048|ref|YP_001037958.1| XRE family transcriptional regulator [Clostridium thermocellum
          ATCC 27405]
 gi|125714273|gb|ABN52765.1| transcriptional regulator, XRE family [Clostridium thermocellum
          ATCC 27405]
          Length = 374

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
               I   I +M     LT   +A   G+   S +K +         +P    + ++  
Sbjct: 1  MKEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQS-----YPDITFLPQLAT 55

Query: 64 ATNETICQLLDLPFSDGRTTEKK 86
            N +I +L+       +   +K
Sbjct: 56 LFNISIDELMGYEPQMSKEDIRK 78


>gi|313906268|ref|ZP_07839612.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313468888|gb|EFR64246.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 96

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          I   ID    + N+T   LA + G+  T  +K +        R PS + + ++    + 
Sbjct: 30 IRAIIDARISQ-NMTQKELAERTGIAQTEISKLENGT-----RNPSIKLLQRLAEGMDM 82


>gi|295401956|ref|ZP_06811918.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294975958|gb|EFG51574.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 72

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +K    I    +    T   LA++ G+  ++  + +R       R P+ E + +I    N
Sbjct: 4  EKWGRRIRAFRKLKGYTQERLAKELGISVSTLGEIERGN-----RLPTEELVQQIAERLN 58

Query: 67 ETICQLLDLPF 77
           ++ +L     
Sbjct: 59 ISVEELAPHSE 69


>gi|302520734|ref|ZP_07273076.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302429629|gb|EFL01445.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +  +      +   LAR+A L  ++ ++ +      R    S  ++ + L  + + 
Sbjct: 12  VRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQR--RLALDSLVTLARALDTSLDQ 69

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           + +            +    ++        G          P  +
Sbjct: 70  LVETTSDDVVTNPMIDGARGQMRWPVKADPGLTVVRQRMTEPPPD 114


>gi|269122513|ref|YP_003310690.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC
          33386]
 gi|268616391|gb|ACZ10759.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC
          33386]
          Length = 127

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 3/74 (4%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          I + I +  E    T   LA K G    ++ NK +    +         +  KIL  T  
Sbjct: 3  IGKRIKKRREELGYTQEQLAEKMGYKSKSTINKIEAGIND--ITQSKITAFAKILKTTPS 60

Query: 68 TICQLLDLPFSDGR 81
           +    D      +
Sbjct: 61 YLMGWEDEESEIYK 74


>gi|269956967|ref|YP_003326756.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269305648|gb|ACZ31198.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 101

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 1  MTSFSHKKIWE-----AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          M  F  + +W       + R+  R   T   +AR+AG+ P   ++ +R   E     PS+
Sbjct: 1  MAGFRREPLWRHVLGDYLRRLRHRRGETLDDVARRAGVSPQYLSEVERGMKE-----PSS 55

Query: 56 ESIFKILAAT 65
          E I  I  A 
Sbjct: 56 EMIAAIAGAL 65


>gi|254489092|ref|ZP_05102296.1| transcriptional regulator, XRE family with Cupin sensor domain
           [Roseobacter sp. GAI101]
 gi|214042100|gb|EEB82739.1| transcriptional regulator, XRE family with Cupin sensor domain
           [Roseobacter sp. GAI101]
          Length = 204

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 48/172 (27%), Gaps = 12/172 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E   +M +   ++   L+ K+G+   + ++ +R       R     +I + L    + 
Sbjct: 16  IGETFRQMRQNQGISLRELSEKSGVSVGTISQIERDLANPSMRV--LTAIRRALNVPMQV 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125
           +        +D                P    G      +   GN    +    +    +
Sbjct: 74  MFGDDSGTTADSDADGDPPFLRRAAKRPRIDLGSLHKELLTSGGNHNLQIMILTIEPGGT 133

Query: 126 PHNGIYAIQTQDTRHKTQD------TSMLPLYRKGDILILNSAIQ-VNCGDR 170
             N   +   +      +        +      +GD  + +SA       D 
Sbjct: 134 SGNTTLSYPAEKGGLVLEGELMLSVDNREAHLEEGDSFVFDSAQPHAFRNDG 185


>gi|254384422|ref|ZP_04999764.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1]
 gi|194343309|gb|EDX24275.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1]
          Length = 462

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   I R+     L+   LA    L P+  +  +        R PS E + +I A   
Sbjct: 5  QTLGSRIRRLRREAGLSQMDLA-GENLSPSYISLLEAG-----KRTPSPEVLEQIAARLG 58

Query: 67 ETICQ 71
              Q
Sbjct: 59 CAPGQ 63


>gi|189353554|ref|YP_001949181.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|189337576|dbj|BAG46645.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 14/151 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  + +   +T S LA + G      ++ +R         P+   +  I  A        
Sbjct: 14  IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 68

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--------GVPEIR 124
             L          +  E   +Y+    +       +    +   +           P   
Sbjct: 69  YSLSKPRSIPWVTRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGASSGERPVDD 128

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
           S   G + ++ +                  D
Sbjct: 129 SDEQGGFVLEGEL-TIWVDGDDTPVTLGPND 158


>gi|187780191|ref|ZP_02996664.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC
           15579]
 gi|187773816|gb|EDU37618.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC
           15579]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 6/137 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E +  +    NL+   LA  +G+     ++ ++         P+  +++KI       
Sbjct: 7   IAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTN-----PTINTLWKIAKGLKVP 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              LL+    D    +K++ E             ++ S  +     +  + + E  S  +
Sbjct: 62  YTSLLEQKEHDTYVIKKRDIEAQFTEEGHYRVYCYYTSTPYRNFELF-QIEIDEGCSYKS 120

Query: 129 GIYAIQTQDTRHKTQDT 145
             ++ + Q+     +  
Sbjct: 121 IGHSKKCQEYIMVLEGE 137


>gi|154504949|ref|ZP_02041687.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149]
 gi|153794832|gb|EDN77252.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149]
          Length = 248

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 11/140 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++K    +  + +    T   LA K  L   + +K +R         P    +  +    
Sbjct: 9   NQKFGGFVAALRKEKGYTQKELAEKLFLSNKAISKWERGLS-----LPDIALLEPLADIL 63

Query: 66  NETICQLLDLPFSDGRTTEKKEKE----IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             T+ +LL           ++  E       L          F    +     ++ +   
Sbjct: 64  GVTVAELLKGERIHAALEPQEMDELLGKTIHLSDNQKHVHSGFHKMWYLFVLGFSILEF- 122

Query: 122 EIRSPHNGIYAIQTQDTRHK 141
                   +  IQ      +
Sbjct: 123 -GILIWQDVNLIQKDIFVLE 141


>gi|108758898|ref|YP_631911.1| peptidase S24-like domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108462778|gb|ABF87963.1| peptidase S24-like domain protein [Myxococcus xanthus DK 1622]
          Length = 126

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 21/77 (27%)

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
               +       SM P  R GD   +           +L+      +V   L      ++
Sbjct: 2   PPALSWVPVHGDSMWPSLRSGDHAGVEPLEGAPRPGDVLLARFDHALVLHRLRRWEAGAV 61

Query: 194 DLMSLNCCYPVDTVEMS 210
            L   N       ++ S
Sbjct: 62  ALRGDNSPQDDAPLDPS 78


>gi|148253753|ref|YP_001238338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405926|gb|ABQ34432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1]
          Length = 482

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   S KK  +     R+ ++  L+ + LA   G+ P+  N  +R       R  S + +
Sbjct: 1   MPGESGKKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQ-----RPVSAQIL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            ++    +  +  L             +    PL           
Sbjct: 56  LRLAETYDLDLRDLATADEDRFFAELNEIFSDPLFRQIELPKQEL 100


>gi|328948101|ref|YP_004365438.1| hypothetical protein Tresu_1233 [Treponema succinifaciens DSM
          2489]
 gi|328448425|gb|AEB14141.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 114

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K +   I     +  +T   LA KAG+     +K +         WP  E+I K L    
Sbjct: 9  KILGANIRCYRIKLKMTQEELAEKAGITSVGISKIETGKT-----WPKKETIEKFLEILE 63

Query: 67 ETICQ 71
              Q
Sbjct: 64 VKPFQ 68


>gi|268591032|ref|ZP_06125253.1| DNA-binding protein [Providencia rettgeri DSM 1131]
 gi|291313838|gb|EFE54291.1| DNA-binding protein [Providencia rettgeri DSM 1131]
          Length = 88

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          K I + I  +   + L+ S LAR  G+     ++ +    +         S+
Sbjct: 24 KNIGKKIKLLRSEYRLSGSDLARIIGISQQQLSRYENGLSDISTSKIMLISV 75


>gi|268590899|ref|ZP_06125120.1| transcriptional regulator, Cro/CI family [Providencia rettgeri
          DSM 1131]
 gi|291313692|gb|EFE54145.1| transcriptional regulator, Cro/CI family [Providencia rettgeri
          DSM 1131]
          Length = 102

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K +   I ++   + LT + +A    +    F++ +R            +S+  I     
Sbjct: 9  KIVGSRIKKLRREYGLTGTEVAMALNVSQQQFSRYERGINR-----IDIDSLVMIADFLK 63

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLY 94
           ++   L+    +   +   E    L +
Sbjct: 64 VSVHYFLEDIDLEQSNSWTSEYNSLLSH 91


>gi|254418818|ref|ZP_05032542.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3]
 gi|196184995|gb|EDX79971.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3]
          Length = 69

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++   +  +      T  GLA KAG+   + N  +               + + L  T
Sbjct: 5  RLGSRLKELRTAAGFTQQGLADKAGVSRKTINTVENGVFI--PSTIVALDLARALNTT 60


>gi|160938794|ref|ZP_02086145.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437757|gb|EDP15517.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC
          BAA-613]
          Length = 230

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 6/62 (9%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            + + I ++ +   ++   LA+K  +   + +  +    +     P  + +  + +A  
Sbjct: 10 NTVGKNIVKLRKEQGMSQEQLAQKIHVTRQAVSNWETGRSQ-----PDLDMLETLASAFG 64

Query: 67 ET 68
            
Sbjct: 65 TD 66


>gi|157693789|ref|YP_001488251.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157682547|gb|ABV63691.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 134

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 2/124 (1%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + E   ++ + LA  +G+     ++ +     G  +  + + +   L    E +
Sbjct: 5   GEQLRILRENRKMSVNQLAMYSGVSAAGISRIENGKR-GVPKPLTIKKLAHALKVPYEDL 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L      +     K + E  L  +  +         +F  G+ W  +   +I   +  
Sbjct: 64  MLLAGHIEQEQVHEMKPKYESVLKIYQTALQKDVEHLPMFD-GDLWERLSAQDISQLNEY 122

Query: 130 IYAI 133
              +
Sbjct: 123 FLTL 126


>gi|111024214|ref|YP_707186.1| DNA-binding protein [Rhodococcus jostii RHA1]
 gi|110823744|gb|ABG99028.1| possible DNA-binding protein [Rhodococcus jostii RHA1]
          Length = 184

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ R  ER  ++ + +AR+AG+  ++ ++ +  G       PS E+++ +  A +  
Sbjct: 10 IGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGN-----PSVETLWALCVALDVQ 64

Query: 69 ICQ 71
          + Q
Sbjct: 65 MSQ 67


>gi|302038624|ref|YP_003798946.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300606688|emb|CBK43021.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira
           defluvii]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 48/172 (27%), Gaps = 8/172 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +H  + + + R+ +  +L+   LA K G  P+  ++ +          PS  S  +I +A
Sbjct: 22  TH--VGDIVRRLRKSRHLSVRTLADKCGFSPSFISQVELRQA-----SPSIASTERIASA 74

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              T+ +             + +    +                  +  +   + +    
Sbjct: 75  LGVTLGEFFRTTSPSHAAVIRADARPVVESEWSRARIEAIGPISEDSQLEPMVITLESGG 134

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           +  +  Y  + +      Q  ++     +    +          D       
Sbjct: 135 ASGSRPYVRRAEQLAVVLQG-TVELTLEENTYSLKRGDAACIPSDIHHCWRN 185


>gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1]
          Length = 322

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  + ++  ++   LA K G+   S +K +     G    P    I +I    + +
Sbjct: 7  LIELRKKSGMSQEELAEKLGVSRQSVSKWE-----GAQSTPDLNRILEISKIFDVS 57


>gi|302534578|ref|ZP_07286920.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302443473|gb|EFL15289.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 404

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 14/38 (36%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          +    +    +    A   G+D T+  + +R   E + 
Sbjct: 3  LKERRKARGYSQESFAVAVGVDRTTVGRWERGETEPQP 40


>gi|227498411|ref|ZP_03928557.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903869|gb|EEH89787.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I  + E+  +    LA+KA ++P   N+ +        R    + I  +    + 
Sbjct: 2   NIGDRIAELREQAGMKQYELAQKANMNPAVLNRIETG-----KRPARDDEIKALAHIFHV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +   LL    S   T  +  +    L+  P     F  +           +   
Sbjct: 57  STDYLLGTSDSGYYTDPETARLAQELHDNPEYKAMFDATRGLSPEAVKEVMNFI 110


>gi|254415140|ref|ZP_05028902.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC
          7420]
 gi|196177946|gb|EDX72948.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC
          7420]
          Length = 72

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   + ++ +   ++   LA K GL  T     +R       R  + +++ K+  +   +
Sbjct: 7  VASNLRKLRQEIGISQEELAGKCGLHRTYVGAIER-----SERNITLQTLEKLAVSLGVS 61

Query: 69 ICQ 71
             
Sbjct: 62 PLD 64


>gi|146299833|ref|YP_001194424.1| putative phage repressor [Flavobacterium johnsoniae UW101]
 gi|146154251|gb|ABQ05105.1| putative phage repressor [Flavobacterium johnsoniae UW101]
          Length = 221

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 23/213 (10%)

Query: 20  HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL-DLPFS 78
             +T        G      + S   G         T+   KIL    E   + L      
Sbjct: 8   KGITKYKFCNDLGFSNKFLDNSSNMG---------TDKACKILHYYPEINSEWLLTGNGP 58

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-----PEIRSPHNGIYAI 133
             +        +              +  ++          +     P+       I  +
Sbjct: 59  MIKEDNTNIVIMNNDRRTIDTLHVSQEIPLYDLEAVAGLRELFNSGKPQRVLDTIKIPNL 118

Query: 134 QTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDRL---LIKPRTGD-IVAKVLIS 187
              D        SM PL + GDI++        +  G+     +      + I  K +  
Sbjct: 119 PKCDGAISVTGDSMYPLLKSGDIVLYKETEFENIFFGEMYLLSVKLNDWEEYITVKYVQK 178

Query: 188 --RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                  + L+S N  +    + +S I  +A I
Sbjct: 179 SDLGSEFVKLVSQNSHHQPKDIHISKISALALI 211


>gi|41410057|ref|NP_962893.1| hypothetical protein MAP3959c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398890|gb|AAS06509.1| hypothetical protein MAP_3959c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 506

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 38  VGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 92

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L      +         P
Sbjct: 93  ATFFSSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHP 134


>gi|331091208|ref|ZP_08340049.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404655|gb|EGG84194.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 219

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I +   R  ++   LA K  +   + +K ++         P  E + ++ +    +
Sbjct: 2  IGENIKKYRRRKGMSQEELAVKLHVVRQTVSKWEQALSV-----PDAEVLMRMASLLEVS 56


>gi|330839181|ref|YP_004413761.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746945|gb|AEC00302.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 44/146 (30%), Gaps = 8/146 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI----LAAT 65
            E +  + E+H+LT + +A++ G+   + +  +   +   +   +   + K+    L   
Sbjct: 4   GEKLKALREKHHLTQTDVAKELGVTQRAISYYENNNVAPNDPE-ALNKLAKLFEITLDEL 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                Q   L     +     E+                D   F   +  +T  + +   
Sbjct: 63  LNNDGQKSKLHKLIEKLLLDTERNYLEWRTAADAGFFDPDEAWF---DPIDTFNLEDFSR 119

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLY 151
                ++ +     +      ++   
Sbjct: 120 YDGYSFSARESYLAYYRGGGYLIAKL 145


>gi|327459409|gb|EGF05755.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL    S  +  E++  +   +
Sbjct: 57 TTDYLLKGIESVVQKEEEQSIKYRRI 82


>gi|327401059|ref|YP_004341898.1| XRE family transcriptional regulator [Archaeoglobus veneficus SNP6]
 gi|327316567|gb|AEA47183.1| transcriptional regulator, XRE family [Archaeoglobus veneficus
           SNP6]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 16/178 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I R  ++  +T   LA   G+      + +   ++     P    + KI     E   + 
Sbjct: 8   IKRKRKKLGITQKKLAELVGVSQPLIARIESGNLD-----PKLSLVRKIFEVLEELEGKS 62

Query: 73  LDLPFSDGRT-----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++             +    +E   +      S           G+      V  I    
Sbjct: 63  VNARSIMNSPVKFVTSSTTLREAIEIMMEDGISQMPVMDNGRVVGSITEGAVVRLILEKG 122

Query: 128 NGIYAIQTQDTRHK----TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
               AI+ ++              L    K  +L+ + A+ V  GDR++      D++
Sbjct: 123 VEASAIKVKECMEPPFPIISPDERLETISK--MLLGSPALLVAEGDRIVGIITKHDVM 178


>gi|324990276|gb|EGC22214.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK353]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL    S  +  E++  +   +
Sbjct: 57 TTDYLLKGIESVVQKEEEQSIKYRRI 82


>gi|260887041|ref|ZP_05898304.1| toxin-antitoxin system, antitoxin component, Xre family
           [Selenomonas sputigena ATCC 35185]
 gi|260863103|gb|EEX77603.1| toxin-antitoxin system, antitoxin component, Xre family
           [Selenomonas sputigena ATCC 35185]
          Length = 214

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 44/146 (30%), Gaps = 8/146 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI----LAAT 65
            E +  + E+H+LT + +A++ G+   + +  +   +   +   +   + K+    L   
Sbjct: 11  GEKLKALREKHHLTQTDVAKELGVTQRAISYYENNNVAPNDPE-ALNKLAKLFEITLDEL 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                Q   L     +     E+                D   F   +  +T  + +   
Sbjct: 70  LNNDGQKSKLHKLIEKLLLDTERNYLEWRTAADAGFFDPDEAWF---DPIDTFNLEDFSR 126

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLY 151
                ++ +     +      ++   
Sbjct: 127 YDGYSFSARESYLAYYRGGGYLIAKL 152


>gi|271962334|ref|YP_003336530.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505509|gb|ACZ83787.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 199

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + R      L+   LA   G+     ++ +R         P+ E + ++  +   T
Sbjct: 25 IAANLRRARLGRGLSVRELAELTGVSKALISQVERGVAN-----PTVEVLSRLATSLELT 79

Query: 69 ICQLLDLP 76
            +L  + 
Sbjct: 80 FGELTRIH 87


>gi|182625431|ref|ZP_02953203.1| LexA repressor [Clostridium perfringens D str. JGS1721]
 gi|177909271|gb|EDT71729.1| LexA repressor [Clostridium perfringens D str. JGS1721]
          Length = 358

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I    +++ L+ + LA K G+  T+    +R  +E     P+  ++ ++    N +
Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVE-----PNIYTLIQLSKLMNCS 63



 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 1/49 (2%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL-IKPRTGDIVA 182
                 + +  SM  L++  +++I         GD ++       +   
Sbjct: 248 KDCFALRVKGNSMNKLFKDNELIICCRNKTPIDGDIVIAYLSENNEATC 296


>gi|197119160|ref|YP_002139587.1| XRE family helix-turn-helix transcriptional regulator [Geobacter
          bemidjiensis Bem]
 gi|197088520|gb|ACH39791.1| helix-turn-helix transcriptional regulator, XRE family [Geobacter
          bemidjiensis Bem]
          Length = 99

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 26/88 (29%)

Query: 3  SFSHKKI--------------------WEAIDRMAERH---NLTPSGLARKAGLDPTSFN 39
            +HK++                    +  +D+  +      +T + +A + G   ++  
Sbjct: 1  MLTHKELKARALEREDVKDEYDRLNEEFHFLDQFLKARAAAGVTQAEIAERIGTTQSAVA 60

Query: 40 KSKRFGIEGRNRWPSTESIFKILAATNE 67
          + +    +     PS  ++ K   A   
Sbjct: 61 RLESGRGK---HSPSIATLEKYAHALGC 85


>gi|58039039|ref|YP_191003.1| aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H]
 gi|58001453|gb|AAW60347.1| Aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H]
          Length = 180

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  +    NL+   LA++ G+  ++ +  +   +      PS  ++ +IL     
Sbjct: 2  DLGARLRFVRTARNLSQRELAKRTGVTNSTISLIESGDMN-----PSVGTLKRILDGIPV 56

Query: 68 TICQLL 73
          T+ +  
Sbjct: 57 TLGEFF 62


>gi|78049702|ref|YP_365877.1| putative DNA binding protein [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|325927530|ref|ZP_08188768.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|78038132|emb|CAJ25877.1| putative DNA binding protein [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|325542123|gb|EGD13627.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 66

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E +  +   L  + G+   + N  +    +     PS    F+I     E+I 
Sbjct: 3  SRVRELREANGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 HVFLYED 64


>gi|117927278|ref|YP_871829.1| XRE family transcriptional regulator [Acidothermus cellulolyticus
          11B]
 gi|117647741|gb|ABK51843.1| transcriptional regulator, XRE family [Acidothermus
          cellulolyticus 11B]
          Length = 233

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +   I + I        ++   LAR AG+     ++ +R       R PS E + +I 
Sbjct: 7  MATPFNIGDFIREQRRLAQMSLRQLARIAGVSNPYLSQVERG-----LRRPSAEILQQIA 61

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
               +   L          T        +L  P 
Sbjct: 62 RGLRISAEALYVRAGILDERTADGAVVDAVLADPH 96


>gi|330974040|gb|EGH74106.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 114

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 5/98 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  + +   ++ + LA   G D    ++ +R         P  E + +I    N  
Sbjct: 8   IGAKIKTLRKSTTMSQADLAELIGCDAPLVSRYERGTT-----LPGIEQLIRIATVFNVA 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
             +LL       RT     ++          S    + 
Sbjct: 63  PGELLPGGQDQLRTRLISLRQDITERIAEVDSPEHLEE 100


>gi|297585255|ref|YP_003701035.1| XRE family transcriptional regulator [Bacillus selenitireducens
          MLS10]
 gi|297143712|gb|ADI00470.1| transcriptional regulator, XRE family [Bacillus selenitireducens
          MLS10]
          Length = 289

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H     AI  + E+  LT   LA+    D ++ +K +          P   ++ K+    
Sbjct: 2  HSSYGHAIKSLREQQGLTQEALAKDI-CDRSTLSKIENGSST-----PHASTLAKLCTRL 55

Query: 66 NET 68
          N +
Sbjct: 56 NIS 58


>gi|323343170|ref|ZP_08083401.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463234|gb|EFY08429.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 127

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 7/107 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + ++  +  LT   LA++      +  K +          P   ++ KI    N ++ 
Sbjct: 4   ANLKKIRLKRKLTQRELAKRVNYSQQAVAKWEVGISN-----PDISNLVKICEELNISVE 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
            LL       +     E  + L ++      G          +    
Sbjct: 59  CLLCQKPKHMQEF--DEWSLHLAFYHVLNLCGTHHEIGLDIRDLDEE 103


>gi|158339379|ref|YP_001520556.1| transcriptional regulator with ATPase activity [Acaryochloris
           marina MBIC11017]
 gi|158309620|gb|ABW31237.1| transcriptional regulator with ATPase activity [Acaryochloris
           marina MBIC11017]
          Length = 216

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 8/140 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  + + H+ + + LAR  G+   + N  +    +     PS E  FK+      +I 
Sbjct: 3   NRLKELRKLHHKSQAALARDLGVSRQAVNGFESGKFD-----PSLEMAFKLAKLFKVSIE 57

Query: 71  QLLDL--PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
            +             ++ +K      F P     F  SG          V  PE      
Sbjct: 58  DVFIYEAENPMQTLVKRYKKYFGFERFAPKAINVFKFSGHRAEQEGTAQV-TPEHLLAGL 116

Query: 129 GIYAIQTQDTRHKTQDTSML 148
                 T      +  T++ 
Sbjct: 117 LADPTSTSARLLHSNGTAVE 136


>gi|148262670|ref|YP_001229376.1| XRE family transcriptional regulator [Geobacter uraniireducens
          Rf4]
 gi|146396170|gb|ABQ24803.1| transcriptional regulator, XRE family [Geobacter uraniireducens
          Rf4]
          Length = 113

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/64 (12%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             + ++I   + ++ ++   T   LA + G+      K +    +      +T+ + ++
Sbjct: 3  PILNSREIGHRLRQLRQQAGWTQERLAEQIGVSTQQIQKYECGTNK-----MNTDRLQQV 57

Query: 62 LAAT 65
            A 
Sbjct: 58 AQAL 61


>gi|332364707|gb|EGJ42476.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1059]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +    + 
Sbjct: 2  NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFDV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKYRRI 82


>gi|323353424|ref|ZP_08087957.1| XRE family transcriptional regulator [Streptococcus sanguinis
          VMC66]
 gi|322121370|gb|EFX93133.1| XRE family transcriptional regulator [Streptococcus sanguinis
          VMC66]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +    + 
Sbjct: 2  NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFDV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKYRRI 82


>gi|302532682|ref|ZP_07285024.1| transcriptional regulator [Streptomyces sp. C]
 gi|302441577|gb|EFL13393.1| transcriptional regulator [Streptomyces sp. C]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 10/164 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++  AI        ++ + LA ++GL     ++ +R         PS  SI++I  A + 
Sbjct: 12  EVGRAIRECRTARRVSMAVLAARSGLSQPFLSQLERGLAT-----PSLSSIYRIAEALDV 66

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIRSP 126
                L  P   G  + + + ++  +             G        +     P     
Sbjct: 67  APGTFLRPPGRPGVVSHESDPQVIRVSEAAGQVARVLIPGGRSALMEAYEHHFEPGQ--G 124

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC-GD 169
             G +    +D  +  +  S++   R  + L+L +    +  GD
Sbjct: 125 ERGWFEHPGEDFLYVLEG-SVVLEVRGEEPLLLTAGQSAHHRGD 167


>gi|295136229|ref|YP_003586905.1| DNA-binding protein [Zunongwangia profunda SM-A87]
 gi|294984244|gb|ADF54709.1| putative DNA-binding protein [Zunongwangia profunda SM-A87]
          Length = 80

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            + K I +A+       ++T   LA  A +   +  K +          P+ ES+ KI 
Sbjct: 12 MTAIKDIGQALQERRHHMHITQKQLADMADIGINTLYKIETGQAN-----PTIESLQKIA 66

Query: 63 AATNET 68
                
Sbjct: 67 DVLGME 72


>gi|322418045|ref|YP_004197268.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320124432|gb|ADW11992.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 106

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   I  + +  +L+   LA K G++P   ++ +     G    PS +++  I     
Sbjct: 6  ELLGMRIREVRKARHLSQERLAEKVGVEPKQISRIE-----GGKSAPSLDTLEAIAKHLQ 60

Query: 67 ETICQLLDLPFSDGRTTEKKEK 88
            +  LLD        T   + 
Sbjct: 61 VQMKDLLDFQHLVPEETAADQA 82


>gi|229021194|ref|ZP_04177833.1| transcriptional regulator, XRE [Bacillus cereus AH1273]
 gi|228740088|gb|EEL90446.1| transcriptional regulator, XRE [Bacillus cereus AH1273]
          Length = 108

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  +T   LA+   L  ++    +R       R P   ++ +I    N +
Sbjct: 5  GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58


>gi|188491757|ref|ZP_02999027.1| putative DNA-binding protein [Escherichia coli 53638]
 gi|188486956|gb|EDU62059.1| putative DNA-binding protein [Escherichia coli 53638]
          Length = 130

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + + ++ +  N+  S L R+ G+ P S     +         P  + + K+   +   + 
Sbjct: 5  KRLQQVLQELNINQSELGRRLGVKPQSVQGWLKGV------MPRMDKLEKLAELSQHPVH 58

Query: 71 QLLDLPF 77
                 
Sbjct: 59 WFFMEEE 65


>gi|182683999|ref|YP_001835746.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
 gi|182629333|gb|ACB90281.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
          Length = 177

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 21  IGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 75

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 76  YVDIVGENKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 135

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 136 DLSDLIHTNIYLVETFDE 153


>gi|188591420|ref|YP_001796019.1| putative transcriptional regulator, XRE family [Cupriavidus
          taiwanensis]
 gi|170938815|emb|CAP63813.1| putative transcriptional regulator, XRE family [Cupriavidus
          taiwanensis LMG 19424]
          Length = 120

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +    E   L    LA+KAG+ P++ +  +        R PS +++  +  + + T  
Sbjct: 17 SRLRTAREYRGLNQGELAQKAGMQPSAISHFETGT-----RKPSFDNLRILADSLDVTTD 71

Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92
           LL                   
Sbjct: 72 YLLGRVEDFKALAGADRLHRHY 93


>gi|218235252|ref|YP_002368031.1| DNA-binding protein [Bacillus cereus B4264]
 gi|218163209|gb|ACK63201.1| DNA-binding protein [Bacillus cereus B4264]
          Length = 374

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+           +         F            
Sbjct: 56  YFNVSIDELICYTPQMEPEGIRNLYHRLAEAFSEEPFDEVMIEC 99


>gi|52842572|ref|YP_096371.1| transposase (IS652) [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629683|gb|AAU28424.1| transposase (IS652) [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 399

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 54/185 (29%), Gaps = 7/185 (3%)

Query: 11  EAIDRMAER------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            A + + ++        ++   LAR   L  ++  +   +G E R +  +T S  ++L  
Sbjct: 102 RASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGL 161

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              +  + +    +     + K     +          + ++       +   + +    
Sbjct: 162 DEHSFNRKVGYATTFCDLAKHKI-FDVVEGRSEKDLESYLNTLEGKEKVQVVCIDLSSSY 220

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                 Y         +     +L          ++  ++   G    ++    ++  K 
Sbjct: 221 RKLIRHYFPNAMIVADRFHVIRLLNQLCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKR 280

Query: 185 LISRR 189
           L  R 
Sbjct: 281 LNRRE 285


>gi|331091384|ref|ZP_08340223.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404248|gb|EGG83795.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 63

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I    +   L+   LA+K G+   + N  +    + 
Sbjct: 5  IRNRRKELGLSQVELAKKCGVSRQTVNAIENNKYDP 40


>gi|268592817|ref|ZP_06127038.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291311602|gb|EFE52055.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 109

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             S  +    I ++  ++ ++ + LA   G+   S +K +R   E +   P+   +  I
Sbjct: 46 PMMSGAQ----IKQLRAQYGMSQAMLALALGMSKESVSKWER--EEKKPSGPALRMLHLI 99


>gi|150020470|ref|YP_001305824.1| cupin 2 domain-containing protein [Thermosipho melanesiensis
          BI429]
 gi|149792991|gb|ABR30439.1| Cupin 2, conserved barrel domain protein [Thermosipho
          melanesiensis BI429]
          Length = 178

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   I  +      T   LA +  L  +  ++ +   +      PS +++ +IL     
Sbjct: 3  KLGSKIRTLRVARGYTQEELADRCDLSRSFISQLENDQV-----SPSIDTLERILRVLGS 57

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
           +           +   K +  +P+ 
Sbjct: 58 DLKTFFSNDKRQEKIVFKVKDRVPMY 83


>gi|186472983|ref|YP_001860325.1| XRE family transcriptional regulator [Burkholderia phymatum STM815]
 gi|184195315|gb|ACC73279.1| transcriptional regulator, XRE family [Burkholderia phymatum
           STM815]
          Length = 204

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     +T   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 26  RVGEQIQRLRNERKMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 80

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  L     +          EIP L    +         +   G  +    +
Sbjct: 81  SLDSLFAPQKAPDPIAVSGPHEIPTLNGHEARYQLRVWGPIELAGK-FEWYEL 132


>gi|9634627|ref|NP_038301.1| ORF1 [Streptococcus phage 7201]
 gi|7248463|gb|AAF43499.1|AF145054_1 ORF1 [Streptococcus phage 7201]
          Length = 67

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          I  +  RHNLT    A+  G  P + +  ++  +    +  S
Sbjct: 10 IKELRARHNLTQEEFAKSVGTTPQTVSAWEKNVLSISPKNMS 51


>gi|82777631|ref|YP_403980.1| hypothetical protein SDY_2416 [Shigella dysenteriae Sd197]
 gi|110806569|ref|YP_690088.1| hypothetical protein SFV_2693 [Shigella flexneri 5 str. 8401]
 gi|309785085|ref|ZP_07679718.1| helix-turn-helix family protein [Shigella dysenteriae 1617]
 gi|81241779|gb|ABB62489.1| hypothetical protein SDY_2416 [Shigella dysenteriae Sd197]
 gi|110616117|gb|ABF04784.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|308927455|gb|EFP72929.1| helix-turn-helix family protein [Shigella dysenteriae 1617]
 gi|320182378|gb|EFW57276.1| transcriptional regulator, XRE family [Shigella boydii ATCC 9905]
 gi|332760140|gb|EGJ90437.1| helix-turn-helix family protein [Shigella flexneri 4343-70]
 gi|333002585|gb|EGK22145.1| helix-turn-helix family protein [Shigella flexneri K-272]
 gi|333007163|gb|EGK26654.1| helix-turn-helix family protein [Shigella flexneri VA-6]
 gi|333007242|gb|EGK26726.1| helix-turn-helix family protein [Shigella flexneri K-218]
          Length = 102

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   LT + +A + G   T+  + +     G    PS  ++ K   AT 
Sbjct: 44 AARKEAGLTQAEVAERMGTKATAITRMESNLASG-ISGPSFATLKKFARATG 94


>gi|28211116|ref|NP_782060.1| putative transcriptional regulatory protein [Clostridium tetani
           E88]
 gi|28203556|gb|AAO35997.1| putative transcriptional regulatory protein [Clostridium tetani
           E88]
          Length = 235

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 13/117 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E +  +    NL+   LA  +G+     ++ ++         P+  +++KI       
Sbjct: 59  IAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTN-----PTINTLWKIAKGLKVP 113

Query: 69  I--------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                         +   +      +E    +  +  S     F+          + 
Sbjct: 114 YTSLLEQKKHDTYVIKKRNIEAQFTEEGHYRVYCYYTSTPYRNFELFQIEIDEGCSY 170


>gi|84687520|ref|ZP_01015396.1| DNA-binding protein, putative [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664429|gb|EAQ10917.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 13/177 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E +  + +    T    A +AGL  ++ +K +   +      P+ E++ K+      
Sbjct: 29  DLGERVRDLRKSRGWTLEQAANQAGLARSTLSKIENGQM-----SPTFEALKKLAVGLEI 83

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ QL   P     +      +                      G       +P      
Sbjct: 84  SVPQLFTPPQDARVSGRMTVTKTG----EGQAHPTATYEHELLAGALTKKAMLPYRARVR 139

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV--NCGDRLLIKPRTGDIVA 182
              +     D   +      L +      LI      V    GD        G  V 
Sbjct: 140 ARSF--DEFDGWVRHDGEEFLYVLTGEIRLITEFYEPVDMRRGDSAYYDASMGHNVI 194


>gi|117924139|ref|YP_864756.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117607895|gb|ABK43350.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 19/149 (12%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            I ++  +  LT   LA  A +   +    ++         PS   ++KI  A   +I Q
Sbjct: 9   RIRQLRSQRKLTQQALADMAEIPRATLATVEKDDAN-----PSLAVVYKIARALGLSIDQ 63

Query: 72  ---------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
                     +              +   ++  P +    F        G  +     P 
Sbjct: 64  LLVTERERIQVVPADQMRWVETADGRYRAVVVSPGNALHFFQQIFSLQAGAVYEGRPHPP 123

Query: 123 IRSPH----NGIYAIQTQDTRHK-TQDTS 146
               +     G   ++      +  +  S
Sbjct: 124 GSEEYLHVLEGALELELAGECKRLVKGDS 152


>gi|327191185|gb|EGE58228.1| putative transcriptional regulator protein [Rhizobium etli
          CNPAF512]
          Length = 125

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EA+ R+  R  ++   +A    + P   +  +     G+   P+ + + +
Sbjct: 1  MTPF-----GEAVRRLRARKGVSQKEMAAALNVSPAYLSALE----HGKRGLPTFDLLQR 51

Query: 61 ILAATNETICQ 71
          I    N    +
Sbjct: 52 IAGYFNIIWDE 62


>gi|299143941|ref|ZP_07037021.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518426|gb|EFI42165.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 178

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 35/112 (31%), Gaps = 5/112 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  +  +  LT   LA ++ L     ++ +R         PS  ++  IL A   
Sbjct: 2   DIGNKLKNLRVKQALTQEELADRSELTKGFISQVERNLT-----SPSVATLIDILEALGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           T  +  +    +    +K++    +       +    ++           + 
Sbjct: 57  TPLEFFEDDVEEKIVFKKEDYFEIVKDDGYKITWIVPNAQKNEMEPIIIELE 108


>gi|254416648|ref|ZP_05030399.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176614|gb|EDX71627.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 165

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 9   IWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS-TESIFKIL 62
           +W A  I  +     LT +  A++ G+   + +  +    E         E + ++ 
Sbjct: 97  LWNAELIKALRRHMGLTQAEFAQRMGVRQKTVSNWEIGLYEPPLSTSKHLELVAQLA 153


>gi|219666716|ref|YP_002457151.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219536976|gb|ACL18715.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 110

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +  + ++H +T   LA + G+D T  +K +   I       +   I K+L
Sbjct: 5  GNTLKNLRKQHKITQRDLAERVGVDFTYISKIETGAIANPPSEKTIIQIAKVL 57


>gi|167740855|ref|ZP_02413629.1| DNA-binding protein [Burkholderia pseudomallei 14]
 gi|167826439|ref|ZP_02457910.1| DNA-binding protein [Burkholderia pseudomallei 9]
 gi|167913192|ref|ZP_02500283.1| DNA-binding protein [Burkholderia pseudomallei 112]
 gi|167921137|ref|ZP_02508228.1| DNA-binding protein [Burkholderia pseudomallei BCC215]
 gi|217423144|ref|ZP_03454646.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576]
 gi|226193468|ref|ZP_03789073.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254192687|ref|ZP_04899123.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13]
 gi|169649442|gb|EDS82135.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13]
 gi|217394052|gb|EEC34072.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576]
 gi|225934350|gb|EEH30332.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A
Sbjct: 21  TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              ++ +L   P +          +IP L    +         +   G  +    +
Sbjct: 76  LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130


>gi|309774779|ref|ZP_07669801.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium
          3_1_53]
 gi|308917464|gb|EFP63182.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium
          3_1_53]
          Length = 40

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          E I ++ +   ++   LA + G+   + +K +    
Sbjct: 5  ERIQKLRKEKGMSQEELANEIGVSRQAVSKWESEVS 40


>gi|284034061|ref|YP_003383992.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283813354|gb|ADB35193.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 8/133 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +       NL+ + LA ++G+     +K +R   +     P+   + ++  A   T
Sbjct: 9   LAATLQAARVDRNLSINALAERSGVSRAMISKIERGEAQ-----PTAVLLGRLSGALGLT 63

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+        T E   +      +    +G    +     G     V V     P  
Sbjct: 64  LSELVARAEQADGTVELLRRAEDQPLWTDPATGYRRRAVSPAAGGPLELVEVE---LPPG 120

Query: 129 GIYAIQTQDTRHK 141
              +        K
Sbjct: 121 ASVSYPADAYIFK 133


>gi|262201424|ref|YP_003272632.1| XRE family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262084771|gb|ACY20739.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 182

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  ++ R   R  L+   LAR+AG+  ++ ++ +          PS E+++ +  A  
Sbjct: 8  VAASLKRERTRAGLSIGELARRAGIGKSTLSQLESGDGN-----PSVETLWALSTALG 60


>gi|83749616|ref|ZP_00946600.1| Hypothetical Protein RRSL_00381 [Ralstonia solanacearum UW551]
 gi|207724930|ref|YP_002255327.1| hypothetical protein RSMK03396 [Ralstonia solanacearum MolK2]
 gi|207738753|ref|YP_002257146.1| hypothetical protein RSIPO_03441 [Ralstonia solanacearum IPO1609]
 gi|83723723|gb|EAP70917.1| Hypothetical Protein RRSL_00381 [Ralstonia solanacearum UW551]
 gi|206590157|emb|CAQ37118.1| hypothetical protein RSMK03396 [Ralstonia solanacearum MolK2]
 gi|206592121|emb|CAQ59027.1| hypothetical protein RSIPO_03441 [Ralstonia solanacearum IPO1609]
          Length = 88

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 19/44 (43%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           + +++   +    ++  L+ + LA + G+   + +  +R    
Sbjct: 7  RTPEQLPAILKGFRKQAGLSQAELAARMGMRQQTLSALERNAEN 50


>gi|322833728|ref|YP_004213755.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
 gi|321168929|gb|ADW74628.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 43/165 (26%), Gaps = 14/165 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF------KI 61
           ++ E +  +      +   LA+  G+   + ++ +R             S        ++
Sbjct: 11  RLAERLAELRVSQGWSLEQLAQMTGISRATLSRVERAETSPTASLLGKLSAAYGLTTSRL 70

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L A  +   +L+           +   E   +  P  G      SGV   G        P
Sbjct: 71  LMALEDNPPELIRASQQPVWHDRETGFERRSVSAPAPGFRAELISGVLKAGASITYDAPP 130

Query: 122 EIRSPHNGI-------YAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
                 +         + +  +  R +     +           +
Sbjct: 131 VEGLEQHIWMLEGVLEFVLDGRSYRLE-PGDCLRFHLHGRTSFYV 174


>gi|319936268|ref|ZP_08010686.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1]
 gi|319808644|gb|EFW05188.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1]
          Length = 212

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + +++N T   LA K G+   + ++ +         +P  + + KI    + +I  L
Sbjct: 10  LISLRKKYNFTQQDLADKLGISNKTISRWETSES-----YPDIDLLPKIADIFHVSIDYL 64

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           L          +              G   ++        + +
Sbjct: 65  LKEHDDFKELDKFDIISYIPWIISLVGVLTYYIFTKLSIPSLF 107


>gi|315644486|ref|ZP_07897618.1| transcriptional regulator, XRE family protein [Paenibacillus vortex
           V453]
 gi|315279993|gb|EFU43290.1| transcriptional regulator, XRE family protein [Paenibacillus vortex
           V453]
          Length = 272

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 2/106 (1%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
              + + I+R  +   LT   LA K G+   + +K +               + ++L  +
Sbjct: 2   RDMLAKNINRYRKERGLTQEALAHKLGVTFQAVSKWETGQTM--PDVALLPELSQLLEVS 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            + +        S     E+ +         P  +       + PT
Sbjct: 60  MDKLFGYSSTGKSLSIYEEEYKTPDYYWGTEPGAACYQVLEMIPPT 105


>gi|237723180|ref|ZP_04553661.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447702|gb|EEO53493.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 97

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + +   +T S LA K G+   S +++           P+ E++ +I  A    I +
Sbjct: 2  RIKEVCKEKGITVSQLAEKMGIKQESLSRAINGN-------PTLETLERIANALEVDITE 54


>gi|161520269|ref|YP_001583696.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|160344319|gb|ABX17404.1| transcriptional regulator, XRE family [Burkholderia multivorans
           ATCC 17616]
          Length = 200

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 14/151 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  + +   +T S LA + G      ++ +R         P+   +  I  A        
Sbjct: 29  IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 83

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--------GVPEIR 124
             L          +  E   +Y+    +       +    +   +           P   
Sbjct: 84  YSLSKPRSIPWVTRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGASSGERPVDD 143

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
           S   G + ++ +                  D
Sbjct: 144 SDEQGGFVLEGEL-TIWVDGDDTPVTLGPND 173


>gi|154494195|ref|ZP_02033515.1| hypothetical protein PARMER_03542 [Parabacteroides merdae ATCC
          43184]
 gi|154086057|gb|EDN85102.1| hypothetical protein PARMER_03542 [Parabacteroides merdae ATCC
          43184]
          Length = 111

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E ID +      +   LA + G+    F+           R     ++ +I  A   +
Sbjct: 4  ILENIDTIRRNRGYSQEYLAMQIGMKQAGFSLIMSGE-----RELKYNTLLQIANALQMS 58

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          +  ++  P               +L  
Sbjct: 59 VIDVITFPDKYVMAKGNGTSTEAVLQI 85


>gi|157370058|ref|YP_001478047.1| XRE family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321822|gb|ABV40919.1| transcriptional regulator, XRE family [Serratia proteamaculans 568]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 13/130 (10%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +    ++  L+   LA K+ +        +       +R  S   + K+  A N +  
Sbjct: 21  SNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAG-----DRNVSLAVLDKLADALNISFT 75

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPP--------SGSGGFFDSGVFPTGNKWNTVGVPE 122
            L+  P + G     +     +             +             G  +++V   E
Sbjct: 76  DLIQAPETRGSHLVGELAWQGVQPASQALFAASVPARQRVELWEWTLMPGEHYDSVPDAE 135

Query: 123 IRSPHNGIYA 132
             S    + A
Sbjct: 136 GWSEIIYVIA 145


>gi|19551615|ref|NP_599617.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 469

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 43/172 (25%), Gaps = 13/172 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + ++    +L+ + LA   GL  +  N+ +        R  +   + +I  A     
Sbjct: 2   GSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEAFGVDA 56

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                   S      +       +           +            V + +       
Sbjct: 57  TFFSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARAMVEMHQRYRNVRD 116

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
            ++I   +   +T          +   +      +V   D +  +    D +
Sbjct: 117 KFSIAVDN---RTNTPEERRPIAEAVSM---PHEEVR--DFIYARQNYFDAL 160


>gi|89896410|ref|YP_519897.1| hypothetical protein DSY3664 [Desulfitobacterium hafniense Y51]
 gi|89335858|dbj|BAE85453.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 103

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I+   E   L+   LA  AGL   +  + +          P  +++FKIL     T
Sbjct: 38 IGKLIEA-REAKGLSQKQLADLAGLKQPAIARLESMKAT-----PQIDTLFKILHPLGYT 91


>gi|255025294|ref|ZP_05297280.1| hypothetical protein LmonocytFSL_01392 [Listeria monocytogenes FSL
           J2-003]
          Length = 158

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 38/143 (26%), Gaps = 10/143 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + ++   +   LA + G         ++       R P  +++ KI    N +  
Sbjct: 4   KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGT-----REPDYQTLLKIAEFFNVSTD 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
            LL    ++   T     +            +             + N   +        
Sbjct: 59  YLLGRDDNNLADTIAAHIDSNATEEDIKEILAYIEEKRKEHANEKEINITEIASKEDEEI 118

Query: 129 GIYAIQTQDT---RHKTQDTSML 148
             +  + +D      +  + +  
Sbjct: 119 NKFVDENEDFKVVAARVMNDAEA 141


>gi|239942469|ref|ZP_04694406.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|239988933|ref|ZP_04709597.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL
           11379]
 gi|291445925|ref|ZP_06585315.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
 gi|291348872|gb|EFE75776.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
          Length = 486

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 33/148 (22%), Gaps = 15/148 (10%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R+     +    +AR  G+  +  N+ +        R  +   + +I           
Sbjct: 16  LRRLRRERGMNQVDMARALGISASYANQIELGQ-----RPLTASVLLQIAKVFGVD---- 66

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY- 131
                        +              G    +         +   V       +  Y 
Sbjct: 67  ---AEFFSEAAGDRLAADLRAALADEACGVAVPAVEEIAEAARDHPEVARALVALHHRYR 123

Query: 132 --AIQTQDTRHKTQDTSMLPLYRKGDIL 157
             A Q           ++LP     D +
Sbjct: 124 ETAEQAAALASPGTGQTLLPPAEPHDEV 151


>gi|257785053|ref|YP_003180270.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
 gi|257473560|gb|ACV51679.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
          Length = 364

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +KI      + +R+  +   LAR+  +   S +K +          P  + I  + 
Sbjct: 1  MLLSEKIMS----LRKRNGWSQEELARQLNVSRQSVSKWESMAS-----MPDIQKIMTMS 51

Query: 63 AATNETICQLLDLPFSDGRTT 83
               +   LL     D   T
Sbjct: 52 ELFGVSTDYLLKDEMEDLPAT 72


>gi|300361923|ref|ZP_07058100.1| possible signal peptidase I [Lactobacillus gasseri JV-V03]
 gi|300354542|gb|EFJ70413.1| possible signal peptidase I [Lactobacillus gasseri JV-V03]
          Length = 216

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186
            + +             SM P +   D +I     ++  GD +++      G +  K +I
Sbjct: 31  FFVLNKFVFANLTVSGISMQPTFENNDRVIALRHAKIKQGDIVIVDAPDEPGALYIKRVI 90

Query: 187 SRRGRSID 194
              G ++ 
Sbjct: 91  GLPGDTVV 98


>gi|226947857|ref|YP_002802948.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226844191|gb|ACO86857.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 130

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  L+   L  K  +   + +K +          P  E +  +      ++ +L
Sbjct: 7   LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +    +   T  +            S    
Sbjct: 62  VMDVKAKESTKTEPLVMNRFETIIDSIDRE 91


>gi|223985127|ref|ZP_03635223.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM
          12042]
 gi|223962949|gb|EEF67365.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM
          12042]
          Length = 260

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA + G    + +K +         +P TE I ++      +
Sbjct: 4  GEKLFKLRKEKGLSQEALADQLGTTRQAVSKWENNQG-----YPETEKILQLSQLFGVS 57


>gi|218695133|ref|YP_002402800.1| transcriptional repressor DicA [Escherichia coli 55989]
 gi|253773470|ref|YP_003036301.1| transcriptional repressor DicA [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161633|ref|YP_003044741.1| transcriptional repressor DicA [Escherichia coli B str. REL606]
 gi|297519572|ref|ZP_06937958.1| transcriptional repressor DicA [Escherichia coli OP50]
 gi|301018731|ref|ZP_07183033.1| transcriptional repressor DicA [Escherichia coli MS 69-1]
 gi|331668029|ref|ZP_08368884.1| HTH-type transcriptional regulator DicA (Repressor protein of
          divisioninhibition protein dicA) [Escherichia coli
          TA271]
 gi|218351865|emb|CAU97588.1| HTH-type transcriptional regulator dicA (Repressor protein of
          division inhibition gene dicA) of prophage [Escherichia
          coli 55989]
 gi|242377304|emb|CAQ32048.1| ybl80 [Escherichia coli BL21(DE3)]
 gi|253324514|gb|ACT29116.1| transcriptional regulator, XRE family [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973534|gb|ACT39205.1| prophage CP-9330 DicA-like protein [Escherichia coli B str.
          REL606]
 gi|253977729|gb|ACT43399.1| prophage CP-9330 DicA-like protein [Escherichia coli BL21(DE3)]
 gi|300399570|gb|EFJ83108.1| transcriptional repressor DicA [Escherichia coli MS 69-1]
 gi|312946171|gb|ADR26998.1| transcriptional repressor DicA [Escherichia coli O83:H1 str. NRG
          857C]
 gi|323947994|gb|EGB43988.1| helix-turn-helix protein [Escherichia coli H120]
 gi|331064771|gb|EGI36675.1| HTH-type transcriptional regulator DicA (Repressor protein of
          divisioninhibition protein dicA) [Escherichia coli
          TA271]
          Length = 135

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +   + + +    +   LT    AR AG+   + ++ +R   +     P  + +F 
Sbjct: 1  MDTRT---LGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQ-----PVGKRLFA 52

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK 88
          +  A   +   L+           ++  
Sbjct: 53 LADALKCSPTWLMFGDEDKAPVPAQELH 80


>gi|167751035|ref|ZP_02423162.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702]
 gi|167655953|gb|EDS00083.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I        LT   +A   G+   + +  +         +P   S+ K+      
Sbjct: 11 DIGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKS-----YPDIISVIKMSDCYEV 65

Query: 68 T 68
          +
Sbjct: 66 S 66


>gi|160944203|ref|ZP_02091432.1| hypothetical protein FAEPRAM212_01712 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444385|gb|EDP21389.1| hypothetical protein FAEPRAM212_01712 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103072|emb|CBL00616.1| Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3]
          Length = 113

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I++       +   LA  +GL  ++ +  +R  ++     P+  SI KI A    
Sbjct: 9   DILGRIEQERLSRGWSEYALAENSGLTQSTISTWRRRNLQ-----PNVASIEKICAGFGI 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           T+ Q      S   T E+K+         P+          
Sbjct: 64  TLSQFFQEEDSVYLTKEQKKLLDLWAKLSPAQREAVTKMLC 104


>gi|29833680|ref|NP_828314.1| regulatory protein [Streptomyces avermitilis MA-4680]
 gi|29610804|dbj|BAC74849.1| putative regulatory protein [Streptomyces avermitilis MA-4680]
          Length = 206

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+ +    T +GL+   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 25  EVGPRLRRIRKERGATLAGLSEATGISVSTLSRLESG-----LRKPSLELLLPIARAHQV 79

Query: 68  TICQLLDLPFSDGRTTEKKEKEIP 91
            + +L+  P         K     
Sbjct: 80  PLDELVGAPPVSDPRVRAKPIVRH 103


>gi|323140942|ref|ZP_08075855.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322414680|gb|EFY05486.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 78

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI   I    +  ++T   LA + G+ P   ++ +     G  +  S  ++ KI     
Sbjct: 7  KKICAKIVFYRKLKSMTQEKLADEVGITPQYLSRIENG---GYTKCVSLSTLMKIAEKLG 63

Query: 67 ETICQLLDLPF 77
           T+ +L++   
Sbjct: 64 ITMSELMEGVE 74


>gi|297580368|ref|ZP_06942295.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297536014|gb|EFH74848.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 133

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 8/131 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E +     +  L+   +A K  +   ++ K +    E +    S   + KIL  T   
Sbjct: 2   IGETLKEARAKTKLSQYDMADKLKITKQTYMKWENGITEPKASQIS--ELAKILNITEAE 59

Query: 69  ICQLLDLPFSDGRTT------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           IC+                  ++  +E+ +L      S            +         
Sbjct: 60  ICRGKLNKRYSLEDFIYRLSCQRPSREMQVLKLWEMISDHEEFFKSLSPESIEEHWEAEA 119

Query: 123 IRSPHNGIYAI 133
            +     I  +
Sbjct: 120 EQRYVGDILKV 130


>gi|253750928|ref|YP_003024069.1| DNA-binding protein [Streptococcus suis SC84]
 gi|253752827|ref|YP_003025967.1| DNA-binding protein [Streptococcus suis P1/7]
 gi|251815217|emb|CAZ50781.1| putative DNA-binding protein [Streptococcus suis SC84]
 gi|251819072|emb|CAR44086.1| putative DNA-binding protein [Streptococcus suis P1/7]
 gi|319757177|gb|ADV69119.1| putative DNA-binding protein [Streptococcus suis JS14]
          Length = 119

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K++ + I  +    NL+   LA K  +   + +K +          P  + + ++     
Sbjct: 2  KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEAT-----PDIDKLVQLAEIFG 56

Query: 67 ET 68
           +
Sbjct: 57 VS 58


>gi|227513202|ref|ZP_03943251.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083583|gb|EEI18895.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
          Length = 132

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            H      + ++   H LT   L +K  +   S +  ++       R PS +S+  +  
Sbjct: 1  MIHLDFGTRLKQLRTEHKLTQEELGKKINVSKASISLYEKN-----LREPSKDSLVTLAN 55

Query: 64 ATNET 68
            N +
Sbjct: 56 FFNVS 60


>gi|282600828|ref|ZP_05979816.2| conserved domain protein [Subdoligranulum variabile DSM 15176]
 gi|282571049|gb|EFB76584.1| conserved domain protein [Subdoligranulum variabile DSM 15176]
          Length = 82

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +       ++T   LA   G+   + N  ++            +SI K L  T + +  
Sbjct: 24 LKAARAEKDMTQGALAEAVGVSRQTINAIEKGEYNPTINL--CKSICKALDKTLDDLFW 80


>gi|239820607|ref|YP_002947792.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805460|gb|ACS22526.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/95 (9%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S  +I   +  +    +++   LA+ +G+  +  ++ +R  +      PS E++ ++  
Sbjct: 1  MSAARIGAQVKALRMAADVSGGALAKTSGISASMLSRIERGLV-----SPSVETLERLAN 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
                 +              + ++  ++    +
Sbjct: 56 GLGVPASRFFGDQARRTDFCHVRARQGVVVDRIGA 90


>gi|187777166|ref|ZP_02993639.1| hypothetical protein CLOSPO_00711 [Clostridium sporogenes ATCC
           15579]
 gi|187774094|gb|EDU37896.1| hypothetical protein CLOSPO_00711 [Clostridium sporogenes ATCC
           15579]
          Length = 393

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 30/133 (22%), Gaps = 5/133 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +        LT + LA K  L   + +  +      +   P   +I K+        
Sbjct: 10  GERLKAARIYRGLTVAELAEKLELQRQTVSMYENN----KLNNPELVTIAKMSTVLGFPK 65

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHN 128
              L+      +      + +                 +        + +  P    P  
Sbjct: 66  KFFLENDKIGIKNGSTYFRALLTTSKKYRNEQTQKVDFIIKLFRYLNDYIEFPVTNLPPG 125

Query: 129 GIYAIQTQDTRHK 141
                +      +
Sbjct: 126 NYSNPEEAAIVLR 138


>gi|325289460|ref|YP_004265641.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324964861|gb|ADY55640.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 343

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   I +  +  NLT   +A++ G+   + NK +          P    +  I    N 
Sbjct: 2  RVGNVIRKYRKDKNLTQEEMAKRLGVTAPAVNKWENGYS-----LPDISLLSPIARLLNI 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|298383894|ref|ZP_06993455.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
 gi|298263498|gb|EFI06361.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
          Length = 102

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I E +     +  +T   LA K G   +  ++ +    +         ++FKI     
Sbjct: 42 IGERLKAERLKAGMTQEQLAAKIGTKKSYISRIENGHAD-----IQLSTLFKIFQGLG 94


>gi|229140248|ref|ZP_04268805.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26]
 gi|228643181|gb|EEK99455.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26]
          Length = 277

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 35/140 (25%), Gaps = 6/140 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14  THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              ++   L    ++    ++    +           G   S     G     +      
Sbjct: 69  FEVSL-DYLLKENAEQSNEKENGYYVSKEMAEGYIVYGEKISKYIALGFSLLILSTIPYL 127

Query: 125 SPHNGIYAIQTQDTRHKTQD 144
                +              
Sbjct: 128 LFKEDVTMSTFLVIIIAVFG 147


>gi|191637076|ref|YP_001986242.1| Type I signal peptidase-like protein [Lactobacillus casei BL23]
 gi|227534606|ref|ZP_03964655.1| type I signal peptidase family protein [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631082|ref|ZP_04674113.1| signal peptidase I [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065401|ref|YP_003787424.1| signal peptidase I [Lactobacillus casei str. Zhang]
 gi|190711378|emb|CAQ65384.1| Type I signal peptidase-like protein [Lactobacillus casei BL23]
 gi|227187762|gb|EEI67829.1| type I signal peptidase family protein [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239527365|gb|EEQ66366.1| signal peptidase I [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437808|gb|ADK17574.1| Signal peptidase I [Lactobacillus casei str. Zhang]
 gi|327381103|gb|AEA52579.1| Signal peptidase I [Lactobacillus casei LC2W]
 gi|327384278|gb|AEA55752.1| Signal peptidase I [Lactobacillus casei BD-II]
          Length = 199

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 18/94 (19%)

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSI-----D 194
            Q TSM P    GD L      +    D ++I    R G +  K +I   G ++      
Sbjct: 39  VQGTSMQPTLENGDRLYSIRVKKPKRNDIVVINAPDRPGSLYIKRVIGMPGDTVSSKDNQ 98

Query: 195 LMSLNCC-----YPVDTVEMSDIEWIARILWASQ 223
           L S+N       Y        +I       WASQ
Sbjct: 99  L-SVNGKKIAEPYLNKKFATDEINK-----WASQ 126


>gi|325695606|gb|EGD37506.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK150]
          Length = 113

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           E +  + ++  LT S +A K  +   ++   +R   +     P+ E++ KI    N
Sbjct: 4  GERLKILRKQVKLTQSQIAEKLDISQQAYASWERGVKK-----PTQENLIKIAQILN 55


>gi|319442546|ref|ZP_07991702.1| putative regulatory protein [Corynebacterium variabile DSM 44702]
          Length = 104

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+      I   +  +    +++ + LA   G++P +    +R      +  PS +  F+
Sbjct: 1  MSPKKKAVIHNRVRVLRAERDMSRAQLAELIGVNPQTVGALERG-----DHSPSLDLAFR 55

Query: 61 ILAAT 65
          I    
Sbjct: 56 ICEIF 60


>gi|310830109|ref|YP_003962466.1| toxin-antitoxin system [Eubacterium limosum KIST612]
 gi|308741843|gb|ADO39503.1| toxin-antitoxin system [Eubacterium limosum KIST612]
          Length = 111

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + + +  +  +LT + LA+KAG+ PT  +  +R       + P  E+   +    + +
Sbjct: 6  LGQRLRQFRKDAHLTQNQLAKKAGITPTYLSIIERGA-----QLPRLETFINLANVLSVS 60

Query: 69 ICQ 71
             
Sbjct: 61 ADD 63


>gi|308176150|ref|YP_003915556.1| DNA polymerase subunit UmuD [Arthrobacter arilaitensis Re117]
 gi|307743613|emb|CBT74585.1| putative DNA polymerase subunit UmuD [Arthrobacter arilaitensis
           Re117]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRT 177
                   +  +   +      +    +M       GD +I++ ++ V  G  ++I    
Sbjct: 32  YFDGGLDLNRLLVRDRVSTFIMRVSGNAMQSAGIHDGDEVIVDRSLSVRHGS-VVIVNLN 90

Query: 178 GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
           G ++ +      G+ + L+S     PV   E  ++     I
Sbjct: 91  GQMLVRRWQ-IDGQEVGLLSDESPLPVVLTEGDEVNVFGVI 130


>gi|284045383|ref|YP_003395723.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949604|gb|ADB52348.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 253

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K +   + R  E   +    LAR+ G+ P+  +  +          PS  ++++I+   N
Sbjct: 21 KDVGARLRRDREARGVGVRELARRIGVSPSLISAIELGKAN-----PSIGTLYQIVDELN 75

Query: 67 ETICQLL 73
           ++ +L+
Sbjct: 76 LSVDELM 82


>gi|261492432|ref|ZP_05988988.1| hypothetical protein COK_0856 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496386|ref|ZP_05992780.1| hypothetical protein COI_2118 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307971|gb|EEY09280.1| hypothetical protein COI_2118 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311891|gb|EEY13038.1| hypothetical protein COK_0856 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 132

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++    +       NL+   +A K GL  ++ ++++R G   + R    E + KI   T 
Sbjct: 70  EQNINNLGAWRIYRNLSQQEVAEKTGLSQSAISQAERKGNRPQKRT--REKLAKIYGCTP 127


>gi|297543547|ref|YP_003675849.1| XRE family transcriptional regulator [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|296841322|gb|ADH59838.1| transcriptional regulator, XRE family [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
          Length = 129

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + ++  +T   LA   G+   +    +        R P  + + KI    N +
Sbjct: 2  LGERIKELRKKKGVTQKELALYLGVSDRAVGYYESGQ-----RTPPPDILQKIADFFNVS 56

Query: 69 ICQLLDLPFSDGRT 82
          +  LL        T
Sbjct: 57 VDYLLGRTGVYNPT 70


>gi|254819794|ref|ZP_05224795.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950]
          Length = 471

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L      +         P
Sbjct: 61  ATFFSSQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVSAHP 102


>gi|225570544|ref|ZP_03779569.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM
          15053]
 gi|225160741|gb|EEG73360.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM
          15053]
          Length = 367

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           I + I +      +T   LA   G+  +S +K +    
Sbjct: 5  NIGKNIMKYRRETGITQEQLAEHMGVSKSSVSKWETGNA 43


>gi|167572260|ref|ZP_02365134.1| aldehyde dehydrogenase-like protein [Burkholderia oklahomensis
           C6786]
          Length = 170

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 19/183 (10%)

Query: 19  RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
           ++ L+   LA++AG+   + +  ++         PS  S+ K+L     ++ +       
Sbjct: 2   KYGLSQRELAKRAGVTNGTISLIEQ-----SRVSPSVGSLKKLLECIPMSLAEFFTFEVD 56

Query: 79  DGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDT 138
           + R+   +  E+P L     G                  V  P +      + A    + 
Sbjct: 57  EDRSVVSRRGEMPNLGNDAIGFYLAGSGVKDRNMCIMREVYQP-LADTGTEMLAHAGHEG 115

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI-DLMS 197
                    L +   G   +L+       GD    + R          +     + +++S
Sbjct: 116 GVVVSGQIELTV--DGTTWLLDP------GDSYYFESRLPH----RFRNPSAEHVCEVVS 163

Query: 198 LNC 200
            N 
Sbjct: 164 ANS 166


>gi|13475454|ref|NP_107018.1| hypothetical protein mlr6529 [Mesorhizobium loti MAFF303099]
 gi|14026206|dbj|BAB52804.1| mlr6529 [Mesorhizobium loti MAFF303099]
          Length = 514

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 2  TSFSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           S + +KI+    I R+     LT + +A   G+ P+  N  +R       R  + + I 
Sbjct: 31 KSMAEQKIFAGPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQ-----RPLTVQLIL 85

Query: 60 KILAATNETICQ 71
          K+ +       +
Sbjct: 86 KLASVYKVDPHE 97


>gi|311069889|ref|YP_003974812.1| putative transcriptional repressor [Bacillus atrophaeus 1942]
 gi|310870406|gb|ADP33881.1| putative transcriptional repressor [Bacillus atrophaeus 1942]
          Length = 139

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  + +  +LT + LA  +G+   + ++ +     G+   P   +I K+        
Sbjct: 5  GEQLRALRKARHLTVNQLAIYSGVSSATISRIEN----GKRGIPKPATIRKLADTLKMPY 60

Query: 70 CQLLDLPFSDGR 81
            L+        
Sbjct: 61 ENLMAAAGHITP 72


>gi|313115454|ref|ZP_07800921.1| signal peptidase I [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622221|gb|EFQ05709.1| signal peptidase I [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
             +    SM P  +  DI++L     +  GD          ++ K +I   G  I+L
Sbjct: 58  VLQVSGDSMNPTLQDRDIILLVKGSDMKTGDLC-GFYWQNKLLLKRIIGLPGDVIEL 113


>gi|302337267|ref|YP_003802473.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM
          11293]
 gi|301634452|gb|ADK79879.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae
          DSM 11293]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I     +HN+  S LA   GL  ++ ++ +R  I      PS  ++ KI  A N  
Sbjct: 14 LGSRIRAQRNKHNMKISELAELTGLTSSTISQVERALI-----SPSIATLKKICDAMNIP 68

Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91
          I  L D    +   +E+      
Sbjct: 69 ISFLFDGVEENDSQSEENVVTQD 91


>gi|300933761|ref|ZP_07149017.1| putative transcriptional regulator RamB [Corynebacterium resistens
           DSM 45100]
          Length = 497

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 35/128 (27%), Gaps = 5/128 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + +  +L+ + LA K G+  +  N+ +       +R  +   + K+ A     
Sbjct: 8   VGSRLRELRKDRSLSQAQLAEKLGISASYVNQIEHN-----SRPLTLAVLDKLTATFGVD 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    +      +       +   P       D            V +       +
Sbjct: 63  ATFFSRGDATRLLAEVQDVVHDREVCPTPVDVAELADLVKNHPTLARAMVEMHSRYRNVS 122

Query: 129 GIYAIQTQ 136
              ++ T 
Sbjct: 123 DKLSLATD 130


>gi|228938970|ref|ZP_04101570.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228971851|ref|ZP_04132472.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228978459|ref|ZP_04138836.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis
          Bt407]
 gi|228781476|gb|EEM29677.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis
          Bt407]
 gi|228787941|gb|EEM35899.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228820819|gb|EEM66844.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326939471|gb|AEA15367.1| transcriptional repressor [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 149

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I E + ++ E    +   +A+K G+   +  K +    
Sbjct: 3  IGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS 40


>gi|168702699|ref|ZP_02734976.1| putative transcriptional regulator [Gemmata obscuriglobus UQM
          2246]
          Length = 84

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++  E +  + E   ++   LA  AGL  T  +  +R       R  S E+I ++  A  
Sbjct: 14 ERFGERLREVREGAGISQERLAELAGLHRTYVSSVERG-----KRNISLENIERLAVALE 68

Query: 67 ETI 69
            +
Sbjct: 69 VEM 71


>gi|196048466|ref|ZP_03115641.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          03BB108]
 gi|196020723|gb|EDX59455.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          03BB108]
          Length = 114

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + + ++ +  +LT + LA    L  +     +    +     P  E++  I +  N ++
Sbjct: 5  GQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQ-----PDIETLASIASFFNVSL 59

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYF 95
            L+    +      ++        +
Sbjct: 60 DVLVGFSNNFMDEPIQQVISEARSTY 85


>gi|163797631|ref|ZP_02191580.1| putative transcriptional regulator [alpha proteobacterium BAL199]
 gi|159177106|gb|EDP61668.1| putative transcriptional regulator [alpha proteobacterium BAL199]
          Length = 199

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 16/175 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI   + R           +A  AG+  T+ ++ +   +E     PS E + ++    + 
Sbjct: 2   KIGPLLKRARTLRRWKQQAVADLAGVAQTTVSRWESGAVE-----PSAEQVRRLAPVLSS 56

Query: 68  TICQLLDLPFSDGRTTEKKEKE--IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
                 D        T          L +   + S       + P  +       P    
Sbjct: 57  VSDLARDSGLRRLVVTSPLPVHLICDLTHRLLAASPAREAEWLVPASDLHGEPLFPFATD 116

Query: 126 PHN---------GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
                       G +A  T       +        R      +   + +N G  +
Sbjct: 117 EIREAESRLDGIGWFADATTGAVLWVRGRERATTIRMVAGYCIWERLTLNDGSPV 171


>gi|332142476|ref|YP_004428214.1| transcriptional regulator, Cro/CI family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552498|gb|AEA99216.1| transcriptional regulator, Cro/CI family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 175

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/157 (8%), Positives = 47/157 (29%), Gaps = 9/157 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   +   + ++ +   ++ S LA  AG+  ++ ++ ++         P+ ++I++
Sbjct: 1   MNQATLNILGRHLKKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGN-----PTLDTIWR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEK----EIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +    +    QL+    +       + +       +            ++      +   
Sbjct: 56  LAKQLDVPFGQLVQPLSTSVGENGVEVRLIEQGQGVPNVDAYWMSVAPNTRREAEAHATE 115

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRK 153
           T     + S       I +       Q  +       
Sbjct: 116 TQETITVISGTLEAGNIGSTQLLLPGQSIAFSADLPH 152


>gi|296271002|ref|YP_003653634.1| XRE family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296093789|gb|ADG89741.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
           43833]
          Length = 406

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 8/123 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +      +  + ++   +   LA +AGL      K +  G          E++  + 
Sbjct: 1   MTGYDDPGAQLRALRQQLGWSQEELANRAGLSTGVIKKIEGGGTA------RMETLRALA 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A        +         T     +  L     +        G        + V +P 
Sbjct: 55  RALGVHTVWFVRPGSP--APTVDNGNDAVLADMRAAILPPVGLDGRPLGTADHDDVHLPR 112

Query: 123 IRS 125
           +  
Sbjct: 113 LAD 115


>gi|325674855|ref|ZP_08154542.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325554441|gb|EGD24116.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 7/136 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  + ++   T S LA   G+  ++ ++ +        R P+ E +  +  A  
Sbjct: 12  DAVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQ-----RKPNLELLLPLARAYG 66

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS--GSGGFFDSGVFPTGNKWNTVGVPEIR 124
             + +L+  P +       K          P     GG         G +   V    + 
Sbjct: 67  VPLDELVGAPETGDPRIHLKPITRGGKTIVPLTRRPGGIQAYKHVIPGARGPQVPDLRVH 126

Query: 125 SPHNGIYAIQTQDTRH 140
             +  +Y +  +    
Sbjct: 127 EGYEWLYVLNGKLRLV 142


>gi|295099455|emb|CBK88544.1| Predicted transcriptional regulators [Eubacterium cylindroides
          T2-87]
          Length = 124

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K++   I +  +   LT   LA  + +        +R         PS E +       N
Sbjct: 5  KELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKN-----PSFEVLRAFCKVLN 59

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
           ++  L++L   +        +++ L   P + 
Sbjct: 60 LSLDSLMNLDLPEDEQAANDMRQLYLSCPPAAR 92


>gi|225387540|ref|ZP_03757304.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme
           DSM 15981]
 gi|225046376|gb|EEG56622.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme
           DSM 15981]
          Length = 300

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E I  + ++  ++   LA +  +   +  K +          P  E++  I A    ++ 
Sbjct: 4   ETIKTLRKQAGMSQEQLAGRLNVSRQAVTKWETAAGT-----PDVENLRAISALFQISLD 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            LL+         E +   +           
Sbjct: 59  DLLENRSPIPPEQEFRFHSVTEYDIDSIKDF 89


>gi|163814538|ref|ZP_02205927.1| hypothetical protein COPEUT_00689 [Coprococcus eutactus ATCC 27759]
 gi|158450173|gb|EDP27168.1| hypothetical protein COPEUT_00689 [Coprococcus eutactus ATCC 27759]
          Length = 293

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 34/183 (18%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +KI+  +D +    N++ S L+R+ G+  ++ N  K+     +   P  + +  I  A +
Sbjct: 11  EKIFARLDEL----NMSQSELSRRTGISTSTINDWKK-----KKINPQADKLVAICKALD 61

Query: 67  ETICQLLDLPF-SDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            ++  LL         T    E++  +  +  S +                 + + +   
Sbjct: 62  MSLADLLGEDGAESSGTDYSAEEKYLVECYRRSDNYVRRHMLR--------YMELIDNVE 113

Query: 126 PHNGIYAIQTQDTRHKTQDTS---MLPLYRKGDILILNSAIQ-------------VNCGD 169
           P+      +           +   +  +  KG   I    ++                GD
Sbjct: 114 PNEMKTPQRNVAVIQDVDGNNIVFINDIIFKGKRSITWPDVEEYLRQNVGEFYSIAETGD 173

Query: 170 RLL 172
            + 
Sbjct: 174 IVY 176


>gi|160914122|ref|ZP_02076344.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991]
 gi|158433933|gb|EDP12222.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991]
          Length = 124

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K++   I +  +   LT   LA  + +        +R         PS E +       N
Sbjct: 5  KELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKN-----PSFEVLRAFCKVLN 59

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
           ++  L++L   +        +++ L   P + 
Sbjct: 60 LSLDSLMNLDLPEDEQAANDMRQLYLSCPPAAR 92


>gi|54026486|ref|YP_120728.1| hypothetical protein nfa45130 [Nocardia farcinica IFM 10152]
 gi|54017994|dbj|BAD59364.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 44/135 (32%), Gaps = 6/135 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   +  + ++   T   L+   G+  ++ ++ +        R P+ E +  +  A  
Sbjct: 6   EAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGA-----RRPTLELLLPLARAHG 60

Query: 67  ETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
            T+ +L+D P +       +      +   P +   G   +              P+   
Sbjct: 61  VTLDELVDAPPTGDPRVHLRPVTRNGMTMLPLTRRPGGIQAYKLIIPPDTRRTPDPKTHE 120

Query: 126 PHNGIYAIQTQDTRH 140
            +  +Y +  +    
Sbjct: 121 GYEWLYVLNGRLRLI 135


>gi|150388718|ref|YP_001318767.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149948580|gb|ABR47108.1| transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 101

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I  + +  + +   LA++  +   + +  +        R PS  ++  +    N +
Sbjct: 3  RIKELRQEKDFSQIQLAKQFDITQQTISNYESGV-----REPSITTLKNLADFFNVS 54


>gi|317502547|ref|ZP_07960684.1| hypothetical protein HMPREF1026_02630 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316896054|gb|EFV18188.1| hypothetical protein HMPREF1026_02630 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + +  N+T + LA++ G+  +     +      R+     E + +I   +   +  L
Sbjct: 4  IKELRKEKNITVAELAKELGISQSMLTNYENGNGTPRDESI-WEKLSQIFGVSKSHVMGL 62

Query: 73 LDLPF 77
               
Sbjct: 63 TTDIE 67


>gi|332652846|ref|ZP_08418591.1| putative transcriptional regulator [Ruminococcaceae bacterium D16]
 gi|332517992|gb|EGJ47595.1| putative transcriptional regulator [Ruminococcaceae bacterium D16]
          Length = 149

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/147 (5%), Positives = 34/147 (23%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  ++    ++  L+   +A K G+   + +K +        R     ++   +      
Sbjct: 3   LGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYHMTLDELI 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                +        +   E +  + +           +    T    +            
Sbjct: 63  EYDFDEQQAQQMIDSVSDEAQARIDWNKVWSKKYPVLATYHKTVRINDYAPALREMLTQL 122

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGD 155
            +                +  +++   
Sbjct: 123 RVDYGYNNTDALLVLKDILARVWKGQM 149


>gi|254712684|ref|ZP_05174495.1| hypothetical protein BcetM6_04806 [Brucella ceti M644/93/1]
 gi|254715754|ref|ZP_05177565.1| hypothetical protein BcetM_04816 [Brucella ceti M13/05/1]
 gi|256015686|ref|YP_003105695.1| transcriptional regulator, putative [Brucella microti CCM 4915]
 gi|261217515|ref|ZP_05931796.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320390|ref|ZP_05959587.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|255998346|gb|ACU50033.1| transcriptional regulator, putative [Brucella microti CCM 4915]
 gi|260922604|gb|EEX89172.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293080|gb|EEX96576.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 182

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|228948403|ref|ZP_04110686.1| hypothetical protein bthur0007_45290 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811390|gb|EEM57728.1| hypothetical protein bthur0007_45290 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 206

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 48/175 (27%), Gaps = 16/175 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I ++ +   L+    A   G+     ++ +     G N+ PS E + K+    + 
Sbjct: 5   ELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLE----TGSNKKPSIEILEKLALGLDL 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               L  L         +                    + +      +       +    
Sbjct: 61  HNNYLTYLAGYYKMPHIE-----YDENLTDEEKEEKIWAEIHKVDGGFTNNPFDILSPYP 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                   ++   KT   +      +   +I++   +VN     +   +   +  
Sbjct: 116 QAAQYNDDKNKLFKTATLACEH--NQPFPIIVDKENKVN-----IEVYKENGLTL 163


>gi|268591033|ref|ZP_06125254.1| putative HTH-type transcriptional regulatory protein [Providencia
          rettgeri DSM 1131]
 gi|291313839|gb|EFE54292.1| putative HTH-type transcriptional regulatory protein [Providencia
          rettgeri DSM 1131]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 5/35 (14%), Positives = 18/35 (51%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          I ++ ++  ++ + LA+K  +     ++ +R   +
Sbjct: 15 IKKLRKKKGISGAELAKKLNVSQQQVSRYERGATK 49


>gi|169343424|ref|ZP_02864427.1| helix-turn-helix domain protein [Clostridium perfringens C str.
          JGS1495]
 gi|169298510|gb|EDS80596.1| helix-turn-helix domain protein [Clostridium perfringens C str.
          JGS1495]
          Length = 182

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI  ++  + + H+LT   +A+   +  +++   +        R PS E + KI    N 
Sbjct: 8  KIGNSLKEIRKNHSLTQEEMAKALNIPRSTYANYENN-----KREPSKELLEKISEVFNI 62

Query: 68 TICQ 71
           +  
Sbjct: 63 PLID 66


>gi|167771744|ref|ZP_02443797.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM
          17241]
 gi|167666384|gb|EDS10514.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM
          17241]
          Length = 132

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             KKI   I +  +  +LT   LA    +   + +K +          P    +  +  
Sbjct: 1  MDQKKIGAFIAQCRKEKSLTQIQLAELLDITNQAVSKWENGRG-----MPDVSLLQPLCD 55

Query: 64 ATNETICQLLDLPF 77
          A   ++ +L     
Sbjct: 56 ALGISLNELFSGEH 69


>gi|67480965|ref|XP_655832.1| Helix-turn-helix protein [Entamoeba histolytica HM-1:IMSS]
 gi|56472996|gb|EAL50446.1| Helix-turn-helix protein, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 125

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 2   TSFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           T   HK++       I R  +  +LT   LA+K    P +    +          PS + 
Sbjct: 55  TPLVHKQVSHKVSLEIQRARQEKHLTQKELAQKINEKPQTIADYESGKAI-----PSQQV 109

Query: 58  IFKILAATN 66
           + K+     
Sbjct: 110 LAKLERILG 118


>gi|332798977|ref|YP_004460476.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332696712|gb|AEE91169.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 131

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + I ++     L+   LA+   + P++    +        R P      ++    N  + 
Sbjct: 4   DRIRKLRNDKGLSQRELAKMLKISPSTIAMYELG-----KREPDIAMFQRLADFFNVPVE 58

Query: 71  QLL--DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            ++            +++  +I L  F  + S             K + +  
Sbjct: 59  YVMGVSDEPKPWWEKDEEPTDIELEEFIKNNSNIKLMGDPLDEKAKDDVLMF 110


>gi|222080797|ref|YP_002542525.1| transcriptional regulator [Agrobacterium radiobacter K84]
 gi|221725476|gb|ACM28565.1| transcriptional regulator [Agrobacterium radiobacter K84]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 13/123 (10%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + R+ +   L+ + LA  +G+        +           S  S+ K+ AA       
Sbjct: 20  NLRRLRKSAGLSQTALAEASGISRRMIIAVEAGDAN-----ISLSSLDKLAAALGVDFVD 74

Query: 72  LLDLPFSDGRTTEKKEKEI--------PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           L+  P    R    +             LL   P+             G++++    P+ 
Sbjct: 75  LVRDPTRASRADINQVTWRGKDGESLAVLLGSAPASLETQMWLWSLGPGDRYDAEPDPQG 134

Query: 124 RSP 126
              
Sbjct: 135 WHE 137


>gi|182416559|ref|ZP_02947984.1| immunity repressor protein [Clostridium butyricum 5521]
 gi|237667186|ref|ZP_04527170.1| DNA-binding phage protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182379631|gb|EDT77113.1| immunity repressor protein [Clostridium butyricum 5521]
 gi|237655534|gb|EEP53090.1| DNA-binding phage protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 118

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I   I+   +  +L+   LA K  +   + ++          R P  E + +I  A  
Sbjct: 2  KTIGRKIEERLQELDLSQKDLADKVNVTEATISRYITGT-----RSPRGEILSRIAVALG 56


>gi|166032705|ref|ZP_02235534.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC
          27755]
 gi|166027062|gb|EDR45819.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC
          27755]
          Length = 257

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 4/57 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          M      +I   I ++     ++   LA K  +   + ++ +              S
Sbjct: 1  MIM----EIKNIILKLRTERGMSQDELADKIMVTRQAVSRWENGATVPNTDTLKLLS 53


>gi|160872014|ref|ZP_02062146.1| helix-turn-helix domain protein [Rickettsiella grylli]
 gi|159120813|gb|EDP46151.1| helix-turn-helix domain protein [Rickettsiella grylli]
          Length = 242

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 71/227 (31%), Gaps = 18/227 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +K+  + +  + +  +L+    A+   L  T+ N  ++       R      + + + 
Sbjct: 17  LINKERAQRLKYLRKMSHLSMKEFAQLCNLGTTTINYWEQGYSNLSERGAR--KVCQAIG 74

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A       +  L             ++  L +    S                   + E 
Sbjct: 75  AEGIDCSTIWLLTGYGEAPCVIDSSKLSKLNYEKFKSLSKNFINEKKPHYSIENKDIKEE 134

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL----ILNSAIQVNCGDRLLIKPRTGD 179
            +     Y    +       + SM PLY  GD++    +     ++  G   +++ +  +
Sbjct: 135 LAIFKKNY---PEHLICSVDNESMKPLYNPGDLVAGKKLTGKNKELAHGADCIVELKNKE 191

Query: 180 IVAKVLIS-RRGRSIDLMSLNC----CYPVD----TVEMSDIEWIAR 217
           ++ + +       S DL  +N      +P       V ++ I  I +
Sbjct: 192 LIIRRIKIAHAAESFDLFVINSETSLEFPPLRNISVVSLAPIIRIWK 238


>gi|163847710|ref|YP_001635754.1| cupin 2 domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525574|ref|YP_002570045.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl]
 gi|163668999|gb|ABY35365.1| Cupin 2 conserved barrel domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449453|gb|ACM53719.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   I  + E+  L+   LA  +GL   + +  +          PS  ++ ++  A   
Sbjct: 18  DVGTRIRTLREQRRLSIRALAEASGLAVNTLSLIENGRT-----SPSVSTLQRLAVALQV 72

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            +           R       +     FP    
Sbjct: 73  PVSTFFTPDVPQQRIVFTPAGQAIASLFPHGAM 105


>gi|53716036|ref|YP_104861.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|53721043|ref|YP_110028.1| DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|67642050|ref|ZP_00440812.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|121596499|ref|YP_990749.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124381530|ref|YP_001025232.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126447905|ref|YP_001077212.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|134283993|ref|ZP_01770688.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305]
 gi|166998988|ref|ZP_02264838.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|167821625|ref|ZP_02453305.1| DNA-binding protein [Burkholderia pseudomallei 91]
 gi|254179132|ref|ZP_04885785.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254204277|ref|ZP_04910635.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|254209445|ref|ZP_04915790.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|254301893|ref|ZP_04969335.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e]
 gi|254359589|ref|ZP_04975861.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|52211457|emb|CAH37447.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|52422006|gb|AAU45576.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|121224297|gb|ABM47828.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|126240759|gb|ABO03871.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|134244604|gb|EBA44703.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305]
 gi|147744814|gb|EDK51896.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|147749965|gb|EDK57037.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|148028776|gb|EDK86736.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|157825063|gb|EDO88955.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e]
 gi|160694650|gb|EDP84659.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|238523111|gb|EEP86551.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|243064807|gb|EES46993.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|261826366|gb|ABM99779.2| DNA-binding protein [Burkholderia mallei NCTC 10229]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A
Sbjct: 21  TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              ++ +L   P +          +IP L    +         +   G  +    +
Sbjct: 76  LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130


>gi|332877406|ref|ZP_08445153.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332684512|gb|EGJ57362.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 96

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + +   LT   LA K G+   S NK+ R        +P  +S+ +I  A    I 
Sbjct: 5  ARIKELCQSKGLTQKDLADKMGISDISLNKTLRGD------YPQLQSLERIANALEVDIA 58

Query: 71 Q 71
          +
Sbjct: 59 E 59


>gi|300697899|ref|YP_003748560.1| DNA-binding transcriptional regulator [Ralstonia solanacearum
          CFBP2957]
 gi|299074623|emb|CBJ54176.1| DNA-binding transcriptional regulator [Ralstonia solanacearum
          CFBP2957]
          Length = 88

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 19/44 (43%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           + +++   +    ++  L+ + LA + G+   + +  +R    
Sbjct: 7  RTPEQLPAILKGFRKQAGLSQAELATRMGMRQQTLSALERNAEN 50


>gi|296140867|ref|YP_003648110.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296029001|gb|ADG79771.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I R   R   + + LAR+A +  ++ ++ +          PS E+++ +  A    
Sbjct: 9  IAAGIQRERTRAGWSMAELARRANIAKSTLSQLEAGTGN-----PSVETLWALATALEIP 63

Query: 69 ICQ 71
            Q
Sbjct: 64 FAQ 66


>gi|227325994|ref|ZP_03830018.1| putative DNA-binding protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++  +I R  ER NL+ + LA++AGL  ++ ++ +          PS E+++ +  A + 
Sbjct: 26  RLAVSIRRERERLNLSVTELAKRAGLAKSTLSQLESGVGN-----PSLETLWALAMALDV 80

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPL 92
            + QL+       +     E     
Sbjct: 81  QVSQLIGQSRQHVQVIRANEGATTY 105


>gi|226322751|ref|ZP_03798269.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758]
 gi|225208912|gb|EEG91266.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758]
          Length = 313

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI   + +  +  NLT   LA K  +   + ++ +          P    + ++    +
Sbjct: 4  KKIGAFLKQCRKEKNLTQEQLAEKFEVSARTVSRWETGIN-----MPDLSILVQLAEYYD 58

Query: 67 ETICQ 71
            I +
Sbjct: 59 VEIRE 63


>gi|115334658|ref|YP_764504.1| immunity repressor protein [Geobacillus phage GBSV1]
 gi|84688608|gb|ABC61304.1| immunity repressor protein [Geobacillus phage GBSV1]
          Length = 148

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 9/117 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + +   LT   L RK  +   S +  +        R P  +++  +  A + +I 
Sbjct: 5   QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGN-----RTPDMDTLKALADALDVSID 59

Query: 71  Q----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                    P         ++ E  +         G      F      +   + E 
Sbjct: 60  YLLGRDNTQPTDTKLPALTEKDERDIQKELEKIINGLKTGSGFAAFGGVDIDELDEE 116


>gi|330898914|gb|EGH30333.1| prophage PSPPH01, Cro/CI family transcriptional regulator
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 78

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 151 YRKGDILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209
             +G ++++++ I+      ++   P + +   K L+        L  LN  YP   V  
Sbjct: 5   IPEGMLILVDTGIEPTASKLVIAKLPESNEATFKKLVED-AGRYFLKPLNPAYPTLAVT- 62

Query: 210 SDIEWIARI 218
            + + I  I
Sbjct: 63  EECKLIGVI 71


>gi|325290667|ref|YP_004266848.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324966068|gb|ADY56847.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 199

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
           I + I  + +   ++   LA K G+   + +K +      
Sbjct: 2  NIADRIQNLRKAKAISQEDLADKVGVSRQAVSKWESEQSVP 42


>gi|318061096|ref|ZP_07979817.1| putative transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 243

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +  +      +   LAR+A L  ++ ++ +      R    S  ++ + L  + + 
Sbjct: 12  VRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQR--RLALDSLVTLARALDTSLDQ 69

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           + +            +    ++        G          P  +
Sbjct: 70  LVETASDDVVTNPMIDGARGQMRWPVKADPGLTVVRQRMTEPPPD 114


>gi|313680627|ref|YP_004058366.1| helix-turn-helix domain protein [Oceanithermus profundus DSM 14977]
 gi|313153342|gb|ADR37193.1| helix-turn-helix domain protein [Oceanithermus profundus DSM 14977]
          Length = 130

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 5/109 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E    + +        +A   GL     +  +R         PS E++  +  A   
Sbjct: 2   KLAERFRELRKERGWRLKDVAEATGLSIPYLSDLERDRTN-----PSLETLRTLAEAYGM 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           ++  L+      G  T                 G         T ++  
Sbjct: 57  SVHDLMAPVDFYGERTPAALPRGLAELLEDPVLGAEITPDWVETLSRIE 105


>gi|294629979|ref|ZP_06708539.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14]
 gi|292833312|gb|EFF91661.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14]
          Length = 101

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +A+        +T S LA +AG+   + ++ +  G       P  E +   L +T  
Sbjct: 28 GKAVRDRRTALGMTQSRLAARAGMTQAAVSRLEHGGSTPTI--PLLERLAAALDSTLH 83


>gi|291561272|emb|CBL40071.1| Helix-turn-helix [butyrate-producing bacterium SS3/4]
          Length = 117

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E I  + ++  LT   L    G+   SF+K K+         PS E++ ++    + + 
Sbjct: 4   LERILELQKQSGLTVKALEAATGISNGSFSKWKKGTY-----APSAEAVLRLAKYFHVST 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
             L  L  S     E    E   +      +    
Sbjct: 59  DYLFCLSDSPYPKVEISLTEKEKILIDAYRAADDM 93


>gi|258510225|ref|YP_003183659.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476951|gb|ACV57270.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 106

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 7/105 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +    +  ++T + LAR  G+   +    +R       R P+   +  I +A +  +
Sbjct: 5   GRRLRAFRKLKHMTQADLARALGVSLATIGGIERGT-----RQPTAHLVSAIASALSVDV 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            +L             +                  D    P    
Sbjct: 60  EELCGPT--WPGDGWDRGAAEDAADSRAGHGHATVDGPHSPLDQG 102


>gi|284034787|ref|YP_003384718.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283814080|gb|ADB35919.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 119

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              + I     R+     +T   LA  A +     ++ +R   E     PS+E +  I 
Sbjct: 1  MLLRQVIGNVFRRLRRERGITLRELAELAQVSVPYLSEIERGRKE-----PSSEILAAIC 55

Query: 63 AAT 65
           A 
Sbjct: 56 RAL 58


>gi|221316986|ref|YP_002533130.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1]
 gi|221243318|gb|ACM16026.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1]
          Length = 112

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 2/56 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           E I ++ +    T   L    G    + +  +        R  S      +L  T
Sbjct: 3  GERIKQLRKARGWTQDDLGEAVGFKKATISLIENNKRNREER--SVTKFADVLDCT 56


>gi|149004413|ref|ZP_01829153.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae
          SP14-BS69]
 gi|147757662|gb|EDK64680.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae
          SP14-BS69]
          Length = 120

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 3/59 (5%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             +  + +   L+   +A++  +   + ++ +    + +      E + ++      +
Sbjct: 1  MNRLKELRQEKKLSQKEIAKEMSISEKTLSRWENGESQIKP-----EKVKQLADYFGVS 54


>gi|159045029|ref|YP_001533823.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12]
 gi|157912789|gb|ABV94222.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +F    I   + R+    N T + +A+  G+  +  N  ++       R  S   + +
Sbjct: 1  MKTF----IGPRLRRLRRDANQTQAEMAKALGISNSYVNMLEKNE-----RSVSVPVLLR 51

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +  A       + D   +      +   + PL +   
Sbjct: 52 LFEAYGVDWRDIADEDDTATLNALRAAFQDPLFHDHS 88


>gi|118465480|ref|YP_883812.1| DNA-binding protein [Mycobacterium avium 104]
 gi|254777121|ref|ZP_05218637.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118166767|gb|ABK67664.1| DNA-binding protein [Mycobacterium avium 104]
          Length = 474

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/102 (7%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L      +         P
Sbjct: 61  ATFFSSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHP 102


>gi|190410646|ref|YP_001965216.1| hypothetical protein pFRL1.10c [Streptomyces sp. FR1]
 gi|84872661|gb|ABC67398.1| hypothetical protein pFRL1.10c [Streptomyces sp. FR1]
          Length = 759

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 21/92 (22%), Gaps = 2/92 (2%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            R+ E   L+ + +A+       +    +    E   R P   +  ++L           
Sbjct: 30  KRLREAAGLSQAQIAKALDARREAVGNWETGKTE--PRPPKRAAYARLLEGLAARFPAPA 87

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                             L     + +     
Sbjct: 88  TNTDGSYVLPPTPTFAEHLEMEARAKADPRPF 119


>gi|85373888|ref|YP_457950.1| transcriptional regulator [Erythrobacter litoralis HTCC2594]
 gi|84786971|gb|ABC63153.1| probable transcriptional regulator [Erythrobacter litoralis
          HTCC2594]
          Length = 459

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
            A+ R+ +R  +T + +A++ G+  +     +R       R
Sbjct: 9  GAALRRLRKREGVTQAEMAQRLGISASYLTLMERNQRPVSAR 50


>gi|25026941|ref|NP_736995.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259508572|ref|ZP_05751472.1| DNA-binding protein [Corynebacterium efficiens YS-314]
 gi|23492221|dbj|BAC17195.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259163839|gb|EEW48393.1| DNA-binding protein [Corynebacterium efficiens YS-314]
          Length = 474

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/128 (9%), Positives = 30/128 (23%), Gaps = 5/128 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++    +L+ + LA   GL  +  N+ +        R  +   + +I  A    
Sbjct: 6   VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEAFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S      +       +           +            V +        
Sbjct: 61  ATFFSRDDDSRLLAEVQDVMLDREINPSSIELQELSEMVYNHPQLARAMVEMHRRYRNVR 120

Query: 129 GIYAIQTQ 136
              +I   
Sbjct: 121 DKLSIAVD 128


>gi|300694265|ref|YP_003750238.1| DNA-binding transcriptional regulator [Ralstonia solanacearum
          PSI07]
 gi|299076302|emb|CBJ35614.1| DNA-binding transcriptional regulator [Ralstonia solanacearum
          PSI07]
          Length = 88

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 19/44 (43%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           + +++   +    ++  L+ + LA + G+   + +  +R    
Sbjct: 7  RTPEQLPAILKGFRKQAGLSQAELAARMGMRQQTLSALERNAEN 50


>gi|302540835|ref|ZP_07293177.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302458453|gb|EFL21546.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces himastatinicus ATCC 53653]
          Length = 195

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 50/182 (27%), Gaps = 28/182 (15%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I   + R   R  L+ + +AR+AG+  ++ ++ +          PS E+++ +     
Sbjct: 19  DSIAAVLRRERGRAGLSLTEVARRAGVAKSTLSQLESGNGN-----PSLETLWALCVTL- 72

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
                 +           + +          + +   + + +            P     
Sbjct: 73  -----DVPPSRLLDPPRPRVQVIRADEGVTLASAQADYQAAMLSAS--------PPGA-- 117

Query: 127 HNGIYAIQTQDTRHKTQDTSM----LPLYRKGDILILNSAIQV---NCGDRLLIKPRTGD 179
              IY +  +    +  D  M      +        +  A +      GD +        
Sbjct: 118 RRDIYRLSAEPGAVRASDPHMPGVVEHVLLASGRARVGLAAEPVELRPGDYVAYPGDLPH 177

Query: 180 IV 181
           + 
Sbjct: 178 LF 179


>gi|218848124|ref|YP_002454675.1| HTH-type transcriptional regulator SinR [Bacillus cereus G9842]
 gi|218546255|gb|ACK98648.1| HTH-type transcriptional regulator SinR [Bacillus cereus G9842]
          Length = 60

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +         T S LA K+G+   + +  +     G  + PS +SI  I +A    +
Sbjct: 1  MHKVKEKRLNKGWTQSKLAEKSGVPQPTISHIEN----GTLKNPSIKSIKNIASALGINL 56

Query: 70 CQ 71
           +
Sbjct: 57 EE 58


>gi|218290643|ref|ZP_03494734.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239308|gb|EED06506.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 106

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 7/105 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +    +  ++T + LAR  G+   +    +R       R P+   +  I +A +  +
Sbjct: 5   GRRLRAFRKLKHMTQADLARALGVSLATIGGIERGT-----RQPTAHLVSAIASALSVDV 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            +L             +                  D    P    
Sbjct: 60  EELCGPT--WPGDGWDRGAAEEAADSRAGHGHATVDGPHSPLDQG 102


>gi|229815042|ref|ZP_04445379.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM
          13280]
 gi|229809272|gb|EEP45037.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM
          13280]
          Length = 276

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I    +   ++ + LA    +   + +  +R         P  +S+  + A    ++ 
Sbjct: 5  EQIKLGRKELGMSQADLADAIWVSRNTVSNWERGDTT-----PDIQSLVLMGALFGLSLD 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLL 93
          +++           +++K   L+
Sbjct: 60 EMVKGDEQVMAQALERDKNHLLI 82


>gi|190889651|ref|YP_001976193.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|190694930|gb|ACE89015.1| putative transcriptional regulator protein [Rhizobium etli CIAT
          652]
          Length = 125

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EA+ R+  R  ++   +A    + P   +  +     G+   P+ + + +
Sbjct: 1  MTPF-----GEAVRRLRARKGVSQKEMAAALNVSPAYLSALE----HGKRGLPTFDLLQR 51

Query: 61 ILAATNETICQ 71
          I    N    +
Sbjct: 52 IAGYFNIIWDE 62


>gi|163757965|ref|ZP_02165053.1| transcriptional regulator, XRE family protein [Hoeflea
           phototrophica DFL-43]
 gi|162284254|gb|EDQ34537.1| transcriptional regulator, XRE family protein [Hoeflea
           phototrophica DFL-43]
          Length = 231

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+I   +        +T + +A   G    +  + +R         PS ++I K   A  
Sbjct: 165 KEIGAKLKAARLEAGVTQAVVAEAMGTKENAIRRLERGE-----HSPSIDTIRKYAEAIG 219

Query: 67  ET 68
             
Sbjct: 220 YD 221


>gi|162455990|ref|YP_001618357.1| hypothetical protein sce7708 [Sorangium cellulosum 'So ce 56']
 gi|161166572|emb|CAN97877.1| hypothetical protein sce7708 [Sorangium cellulosum 'So ce 56']
          Length = 205

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +  + E+  L+ + L  K GL  +S    +        R P ++ + K 
Sbjct: 140 LKVLREKLGLSQAELGEKLGLARSSVANYENG------RSPLSQRLRKW 182


>gi|154495860|ref|ZP_02034556.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC
          29799]
 gi|150275058|gb|EDN02106.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC
          29799]
          Length = 253

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     ++    + ++    NLT   LA +  +   + +K +R         P    +  
Sbjct: 1  MNDIDKERFGGFLLQLRREKNLTQKELAERLFVSDKAVSKWERGLS-----LPDVGLLLP 55

Query: 61 ILAATNETICQ 71
          +      T+ +
Sbjct: 56 MADCLGVTVTE 66


>gi|15678686|ref|NP_275801.1| epoxidase [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621742|gb|AAB85164.1| epoxidase [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 190

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 14/173 (8%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
              + E I ++ +  N+T   LA ++G++     K +   I      PS   + KI    
Sbjct: 3   ENTVGERIKQLRDNQNITVDELAERSGVNAELIKKIEEGDII-----PSLTPLIKISRTL 57

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP---TGNKWNTVG-VP 121
              +  LLD    D     +K K   +++F          +  F     G     +    
Sbjct: 58  GVRLGTLLDDRVQDEPVIVRKGKTQRVIHFSGYEEKTDTSNLSFHSLGAGKGDRHMEPFI 117

Query: 122 EIRSPHNGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
                H   + +   + ++  +  +    + +    D  +L+    +     +
Sbjct: 118 IDVELHTDDFKLSSHEGEEFIYVLEGE--IEVIYGQDRYLLSEGDSIYYDSVV 168


>gi|21221314|ref|NP_627093.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|7635971|emb|CAB88806.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 280

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           +   +++   + R+ ER  LT      + G+   + ++ +    EG  +WP+ +++ +
Sbjct: 5  PTTRRRQLGADLRRLRERKGLTLEEAGSRVGISKATLSRYE--TKEGTVKWPAVDALCR 61


>gi|14591505|ref|NP_143586.1| hypothetical protein PH1748 [Pyrococcus horikoshii OT3]
 gi|3258179|dbj|BAA30862.1| 192aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 1/127 (0%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ +   +T   LARKAG+      K +   ++ R    +   +  +L      I   
Sbjct: 13  IKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNR-ILRALLECQKTRITAK 71

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
             +       + + + E  +                           +         IY+
Sbjct: 72  NIMSSPIISVSSEDKIEKVVRLMEKYNISQVPVMEKDKIVGAITERLLVRKSLEDEDIYS 131

Query: 133 IQTQDTR 139
            + +D  
Sbjct: 132 KKAKDIM 138


>gi|99081574|ref|YP_613728.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037854|gb|ABF64466.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040]
          Length = 133

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           + +    E   +T   LAR+ G+  ++    ++   E R    ST S
Sbjct: 17 GDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLS 64


>gi|326390746|ref|ZP_08212299.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993140|gb|EGD51579.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 160

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  + ++  LT   LA   G+   +    +        R P  + + KI    N +
Sbjct: 2   LGKRIKELRKKKGLTQKDLALYLGVSDRAVGYYENEQ-----RTPPPDILQKIADFFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
           +  LL    +        ++             
Sbjct: 57  VDYLLGRTDNPSEIKNFSKEISKNPIINQPQEW 89


>gi|323693104|ref|ZP_08107323.1| hypothetical protein HMPREF9475_02186 [Clostridium symbiosum
           WAL-14673]
 gi|323502858|gb|EGB18701.1| hypothetical protein HMPREF9475_02186 [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K++ E I        L+   L ++ G++ ++  + +  G++ + R    + +   L  T 
Sbjct: 10  KQVGERIRERRTELKLSMPELGKRLGVNKSTIQRYEADGVDPK-RTMIIDGLAHALLTTP 68

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           E +  L +    +  T  + + E  +  +  + +        
Sbjct: 69  EWLTGLSEDKEYNSYTVCQMDLEKHVKDYLEALTVSVKGEPH 110


>gi|295094077|emb|CBK83168.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1]
          Length = 189

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             KK    +  + +   LT   LA + G+   S ++ +          P    + ++  
Sbjct: 1  MDQKKSGSFLRELRKEKQLTQEQLAERFGVTSRSVSRWETGSN-----MPDLSILVELAD 55

Query: 64 ATNETICQ 71
            +  I  
Sbjct: 56 FYDVDIRD 63


>gi|240169857|ref|ZP_04748516.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
           12478]
          Length = 138

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E   ++   LA ++G+     ++ +R       R PS + + +I  A   
Sbjct: 20  DIGSFIRTQRETAQVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLAQIAKALRV 74

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +   L         +   + ++  +     +         ++  
Sbjct: 75  SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYAA 118


>gi|228993734|ref|ZP_04153639.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM
          12442]
 gi|228765945|gb|EEM14594.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM
          12442]
          Length = 77

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 21/75 (28%), Gaps = 5/75 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       +   +  +      + + LA + G+   +    +          PS    F+
Sbjct: 1  MAMNQRGSLVNNLIVLRAEKRWSQTELANRVGVSRQTIASIEANRYN-----PSLILAFE 55

Query: 61 ILAATNETICQLLDL 75
          I     +   ++   
Sbjct: 56 IAHVLGKEFHEVFQY 70


>gi|220903711|ref|YP_002479023.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868010|gb|ACL48345.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 215

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  +     L+   LA + G+D ++ +  +R   +     PS  S+  I  A   T  +L
Sbjct: 145 LRTLRVEAGLSQEQLAAQCGMDRSAISLLERQKNQ-----PSLASLVLISEALGMTAAEL 199

Query: 73  LDLPFSDGRT 82
           +    +D   
Sbjct: 200 IGRVEADIPQ 209


>gi|182434275|ref|YP_001821994.1| hypothetical protein SGR_482 [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|178462791|dbj|BAG17311.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
          13350]
          Length = 518

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + E +  + ER   T + LAR+ G+  ++ ++            P  E + ++  A 
Sbjct: 31 LAERLSALRERSGRTYASLARRIGVSGSTLHRYCTGRTVPAEFAP-VERLARLCGAP 86


>gi|145219417|ref|YP_001130126.1| XRE family transcriptional regulator [Prosthecochloris
          vibrioformis DSM 265]
 gi|145205581|gb|ABP36624.1| putative transcriptional regulator, XRE family [Chlorobium
          phaeovibrioides DSM 265]
          Length = 78

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I     R   +   LA KAGL  T     +R       R  +  +  KI+ A N  
Sbjct: 2  LGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGE-----RNITLLNYAKIVDALNLA 56

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
          +  L+          E   ++
Sbjct: 57 MHDLMKASVYPPPPPEANIQK 77


>gi|91790855|ref|YP_551806.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700735|gb|ABE46908.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 166

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 6/68 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    H+ +   + +      L+   LA  AGL   + N  +     GR    S     +
Sbjct: 1  MPIL-HE-LAANVKKKRSEMGLSQERLAELAGLSRATINALE----AGRLDNLSLTRAER 54

Query: 61 ILAATNET 68
          +       
Sbjct: 55 LANILGYG 62


>gi|116493825|ref|YP_805559.1| Signal peptidase I [Lactobacillus casei ATCC 334]
 gi|116103975|gb|ABJ69117.1| Signal peptidase I [Lactobacillus casei ATCC 334]
          Length = 199

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 18/94 (19%)

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSI-----D 194
            Q TSM P    GD L      +    D ++I    R G +  K +I   G ++      
Sbjct: 39  VQGTSMQPTLENGDRLYSIRVKKPKRNDIVVINAPDRPGSLYIKRVIGMPGDTVSSKDNQ 98

Query: 195 LMSLNCC-----YPVDTVEMSDIEWIARILWASQ 223
           L S+N       Y        +I       WASQ
Sbjct: 99  L-SVNGKKIAEPYLNKKFATDEINK-----WASQ 126


>gi|332669413|ref|YP_004452421.1| helix-turn-helix domain-containing protein [Cellulomonas fimi
          ATCC 484]
 gi|332338451|gb|AEE45034.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484]
          Length = 176

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
          +I +++        L+ S LA + GL     +K +  G   + R  
Sbjct: 10 RIAQSLRDRRVELGLSQSELAERLGLTQAYLSKLETAGATTQLRRL 55


>gi|313672769|ref|YP_004050880.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939525|gb|ADR18717.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 200

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 9/160 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I R+    NLT   +A   G      ++ +   +      P   ++ KI    N 
Sbjct: 7   NIGERIKRLRHMRNLTLQDVANFTGFSKALISQIENNVVT-----PPITTLAKIAKVLNV 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS-GSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +    +           K+ +  + Y   +     + +       + + +  V     P
Sbjct: 62  KMVYFFEDDLDFKEYYLVKKNDRKIAYREGAKHGYIYEELAHIKNNDIFESFVVTIRSEP 121

Query: 127 HN-GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
               +++ +  +  +  +    + +Y   D++ L     +
Sbjct: 122 REKKLFSHEGYEFMYILEG--GIRMYLNNDVVTLEEGDSI 159


>gi|317056742|ref|YP_004105209.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315449011|gb|ADU22575.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 146

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 15/46 (32%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          I  +  +  L+   LA K  +   + ++ +              S+
Sbjct: 7  IRELRVKRGLSQEELAEKVYVTRQAVSRWENGDTVPNTETLKLLSV 52


>gi|295133833|ref|YP_003584509.1| PbsX family transcriptional regulator [Zunongwangia profunda
          SM-A87]
 gi|294981848|gb|ADF52313.1| PbsX family transcriptional regulator [Zunongwangia profunda
          SM-A87]
          Length = 64

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  +    N+T + LA +  +   + N  ++   +     PS    FKI    N  I 
Sbjct: 3  NRIKVLRAEKNITQAELANRVEVSRQTINAIEKGKFD-----PSLPLAFKIARLFNLKIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DIFQDEE 64


>gi|291530129|emb|CBK95714.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
 gi|291556915|emb|CBL34032.1| Predicted transcriptional regulators [Eubacterium siraeum
          V10Sc8a]
          Length = 219

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I        LT   +A   G+   + +  +         +P   S+ K+      
Sbjct: 4  DIGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKS-----YPDIISVIKMSDCYEV 58

Query: 68 T 68
          +
Sbjct: 59 S 59


>gi|282162049|gb|ADA79913.1| hypothetical protein CU5_35 [Lactobacillus phage phiPYB5]
          Length = 64

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  +     +T    A+  G+   ++   +          P+ E I K    T   
Sbjct: 5  LKALRANKGMTQEEAAKAIGVSQYTWQNYEHGKT--FPDVPTIEKIEKKFNVTYND 58


>gi|288935523|ref|YP_003439582.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890232|gb|ADC58550.1| transcriptional regulator, XRE family [Klebsiella variicola
          At-22]
          Length = 95

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  + ++++ T   LAR+ G+   + +  +           +  ++FKIL +   
Sbjct: 18 QLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENH-----PDKTTLTTLFKILQSLGV 72

Query: 68 TICQLLDLPFSDGRTTEK 85
           +        +       
Sbjct: 73 VMTLNAKATETAPAPDNN 90


>gi|259417133|ref|ZP_05741052.1| transcriptional regulator, XRE family with cupin sensor
           [Silicibacter sp. TrichCH4B]
 gi|259346039|gb|EEW57853.1| transcriptional regulator, XRE family with cupin sensor
           [Silicibacter sp. TrichCH4B]
          Length = 188

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 1   MTSFSHKKIW----EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   I       +        L+   +A  +G+  +  ++ +R         P+  
Sbjct: 1   MTDTT-DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGES-----SPTIA 54

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +++ +  A       LL+   +  R    + +++P++    +       S     G    
Sbjct: 55  TLWNLTRALQVDFAGLLEASETVDRVDVLRARDVPVIDSKAAQCTIAILSPPEDVGGHEV 114

Query: 117 T 117
            
Sbjct: 115 Y 115


>gi|239637339|ref|ZP_04678322.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239597071|gb|EEQ79585.1| conserved hypothetical protein [Staphylococcus warneri L37603]
          Length = 67

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R     + LA+KAG+   + +  +R         PS  +  KI    N
Sbjct: 3  NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAIKIARIFN 53


>gi|206576102|ref|YP_002238537.1| transcriptional regulator HipB [Klebsiella pneumoniae 342]
 gi|290509561|ref|ZP_06548932.1| DNA-binding transcriptional regulator HipB [Klebsiella sp.
          1_1_55]
 gi|206565160|gb|ACI06936.1| transcriptional regulator HipB [Klebsiella pneumoniae 342]
 gi|289778955|gb|EFD86952.1| DNA-binding transcriptional regulator HipB [Klebsiella sp.
          1_1_55]
          Length = 88

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  + ++++ T   LAR+ G+   + +  +           +  ++FKIL +   
Sbjct: 11 QLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENH-----PDKTTLTTLFKILQSLGV 65

Query: 68 TICQLLDLPFSDGRTTEK 85
           +        +       
Sbjct: 66 VMTLNAKATETAPAPDNN 83


>gi|154506035|ref|ZP_02042773.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC
          29149]
 gi|153793534|gb|EDN75954.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC
          29149]
          Length = 122

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S+ ++ E + R+ + H+ T   ++    +   +++  +        R P  +S+ ++  
Sbjct: 1  MSNIQLVENLYRLRKAHHYTQQEISDLLNISRQAYSNYE-----TSKRTPDLDSLMRLAD 55

Query: 64 ATNETICQLLDLPF 77
              ++ QL++ P 
Sbjct: 56 IYGVSLDQLVNHPC 69


>gi|108761990|ref|YP_629050.1| DEAD/DEAH family helicase [Myxococcus xanthus DK 1622]
 gi|108465870|gb|ABF91055.1| helicase, DEAD/DEAH family [Myxococcus xanthus DK 1622]
          Length = 1280

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 33/150 (22%), Gaps = 12/150 (8%)

Query: 62   LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                         L          + +  PL  +    +     +      +  +    P
Sbjct: 1010 AGMPGTAFRVRFTLGPDGWSAAPVQAEPSPLAPWGTLVAFPSLRAAAGAVEHPISIDQAP 1069

Query: 122  EIRSPHNGIYAIQTQDTRHKTQDTSM---LPLYRKGDILILNSAIQV---NCGDRLLIKP 175
            E                  +    SM       R GD L++  A          R+ +  
Sbjct: 1070 EAARVRLPSRVQGEGLFAVRASGDSMDGGAHPIRDGDWLVMRDAKAAGAGRLDGRVALVQ 1129

Query: 176  RTGDIV-----AKVLISRRGRSIDLMSLNC 200
                I       K L+ +      L S N 
Sbjct: 1130 VPDPITGFRYQVKRLVRQ-DGHWLLRSDNP 1158


>gi|21233393|ref|NP_639310.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66770358|ref|YP_245120.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|188993556|ref|YP_001905566.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. B100]
 gi|325920249|ref|ZP_08182199.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325923520|ref|ZP_08185169.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325923552|ref|ZP_08185196.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|21115231|gb|AAM43192.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66575690|gb|AAY51100.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|167735316|emb|CAP53530.1| transcriptional regulator [Xanthomonas campestris pv. campestris]
 gi|325545969|gb|EGD17179.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325545992|gb|EGD17197.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325549272|gb|EGD20176.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 66

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E    +   L  + G+   + N  +    +     PS    F+I     E+I 
Sbjct: 3  SRVRELREASGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 HVFLFED 64


>gi|89894475|ref|YP_517962.1| hypothetical protein DSY1729 [Desulfitobacterium hafniense Y51]
 gi|89333923|dbj|BAE83518.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + E I  + + +  +   LA K  +   S +K +          P    I ++     
Sbjct: 3  LAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAI-----PDINRILELARLFG 55


>gi|50122571|ref|YP_051738.1| putative DNA-binding protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49613097|emb|CAG76548.1| putative DNA-binding protein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 184

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++  +I R  ER NL+ + LA++AGL  ++ ++ +          PS E+++ +  A + 
Sbjct: 9  RLAVSIRRERERLNLSVTELAKRAGLAKSTLSQLESGIGN-----PSLETLWALAMALDV 63

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
           + QL+  P    +     E     
Sbjct: 64 QVSQLIGQPRQHVQVIRANEGAATY 88


>gi|325262256|ref|ZP_08128994.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324033710|gb|EGB94987.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 197

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          K+ + I  + +   +T   LA    +   + +K +R   
Sbjct: 5  KVGKLILTLRQEKGMTQKALADAMNISDRTISKWERGVG 43


>gi|332655107|ref|ZP_08420848.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332515967|gb|EGJ45576.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 316

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +K    I +      LT   LA+   + P + +K +R        +P    +  +     
Sbjct: 12 QKTGALIGQARREKGLTQKELAQALHVSPQAVSKWERGLN-----FPDLALLEALSDQLG 66

Query: 67 ETICQ 71
           T+ +
Sbjct: 67 LTVSE 71


>gi|225419983|ref|ZP_03762286.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme
           DSM 15981]
 gi|225041375|gb|EEG51621.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme
           DSM 15981]
          Length = 151

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +I   I ++    +++   LA+++G    ++ NK +    +          I  I  A  
Sbjct: 15  EIGNRIKQLRTEKDMSQDELAKRSGYGSRSTINKIELGIND-----VPQSKIKAIAEALG 69

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
            ++  LL     D      K ++   L        G
Sbjct: 70  VSVGTLLCWDEFDESHNTIKIQKEINLIEQIEQQHG 105


>gi|184155136|ref|YP_001843476.1| hypothetical protein LAF_0660 [Lactobacillus fermentum IFO 3956]
 gi|183226480|dbj|BAG26996.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956]
          Length = 104

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I ++ +  +++   LA+   +  ++    +        R P+ E + K+      
Sbjct: 2  NIGERIAQLRKSRSMSQFQLAKTLNIATSTLGMYE-----TNKRKPNMEMLEKLADFFGV 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|148378345|ref|YP_001252886.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|168184831|ref|ZP_02619495.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|237793662|ref|YP_002861214.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|148287829|emb|CAL81895.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502]
 gi|182672129|gb|EDT84090.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|229261583|gb|ACQ52616.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 181

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I E I  + +  NLT   L+ K GL  +  ++ +           +  S+ KI  A N
Sbjct: 3   NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSS-----SLAITSLKKIADALN 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I      P       +K+E+E  +     S S     SG F      + + V      
Sbjct: 58  VPITYFFKSPELHKFLVKKQERE--VFELEGSSSKFIRLSGNFTERAMESILVVIPAEKQ 115

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
           H   ++   ++  +  +  +++      D  +
Sbjct: 116 HGHKFSHPGEEFIYVLEG-AIIANIDGEDYFV 146


>gi|219668902|ref|YP_002459337.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219539162|gb|ACL20901.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 322

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + E I  + + +  +   LA K  +   S +K +          P    I ++     
Sbjct: 3  LAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAI-----PDINRILELARLFG 55


>gi|333003174|gb|EGK22722.1| helix-turn-helix family protein [Shigella flexneri K-272]
 gi|333017008|gb|EGK36330.1| helix-turn-helix family protein [Shigella flexneri K-227]
          Length = 102

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   LT + +A + G   T+  + +     G +  PS  ++ K   AT 
Sbjct: 44 AARKEAGLTQAEVAERMGTKATAITRMESNLASGVS-GPSFATLKKFARATG 94


>gi|325845348|ref|ZP_08168648.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|325488602|gb|EGC91011.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 194

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 14/175 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I ++ +   L+   LA K  +   + +K +          P TE + ++    N +
Sbjct: 6   LGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAI-----PDTEHVVRLAEVFNVS 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I  LL        T + K   + +          F   G F +        V +I +   
Sbjct: 61  IDSLLRGDLKCQPTNQGKCLPVLIGMMVIGLVVSFMMWGTFKSFMLVTIGWVIQIVTIIL 120

Query: 129 GIYAIQ----TQDTRHKTQDTSMLPLYR-----KGDILILNSAIQVNCGDRLLIK 174
            I   +     +    K     ++P +         ++    A        ++  
Sbjct: 121 FIVIHEKPTYKEIYWIKVSSVWLIPPFIVKYLVDQLMIFYPKARPAIFDLIVVSM 175


>gi|229490457|ref|ZP_04384298.1| transcriptional regulator, Cro/CI family [Rhodococcus
          erythropolis SK121]
 gi|229322747|gb|EEN88527.1| transcriptional regulator, Cro/CI family [Rhodococcus
          erythropolis SK121]
          Length = 190

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K +  A+ R   R  L+ S +AR+A +  ++ ++ +          PS E+++ +  A 
Sbjct: 13 QKLVAVALKRERTRAGLSLSEVARRADIAKSTLSQLESGLGN-----PSLETLWALGNAL 67

Query: 66 NETICQ 71
               Q
Sbjct: 68 GVPFSQ 73


>gi|237794998|ref|YP_002862550.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657]
 gi|229264088|gb|ACQ55121.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657]
          Length = 141

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I ++ E   LT   LA K  +  ++    +     G  R    +++ K+      +
Sbjct: 2  LGDKIKQLRENKKLTQHELANKLNIAQSTIGMIE-----GNKRPAGRKTLIKLADFFGVS 56


>gi|226329569|ref|ZP_03805087.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198]
 gi|225202755|gb|EEG85109.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198]
          Length = 161

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 38/144 (26%), Gaps = 3/144 (2%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              +++ +   + ++ +  NL+ + L+RK+G+   + +K +        R  + E+I  I
Sbjct: 6   PKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSN--PRIDTLEAIA-I 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                  K         F      G               +  P
Sbjct: 63  ALGFPLGDLFSFTREEYPRLERHKPIVGDYAQEFKFRIGIGNITEIWHIEMKHGAIINSP 122

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDT 145
                      + +     +  + 
Sbjct: 123 AHADGTQEHIMVYSGKLMMRFDND 146


>gi|182435435|ref|YP_001823154.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|178463951|dbj|BAG18471.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
          Length = 468

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             + R+ E   ++ + LAR   + P+  N+ +        R  +   + ++  A     
Sbjct: 7  GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDA-----RPLTVPVLLRLTEAFGVDP 61


>gi|99082865|ref|YP_615019.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99039145|gb|ABF65757.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
           sp. TM1040]
          Length = 188

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 1   MTSFSHKKIW----EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           MT  +   I       +        L+   +A  +G+  +  ++ +R         P+  
Sbjct: 1   MTDTT-DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGES-----SPTIA 54

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +++ +  A       LL+   +  R    + +++P++    +       S     G    
Sbjct: 55  TLWNLTRALQVDFAGLLEAGEAADRIDVLRARDVPVIDSKAAHCTIAILSPPEDVGGHEV 114

Query: 117 T 117
            
Sbjct: 115 Y 115


>gi|327405730|ref|YP_004346568.1| helix-turn-helix domain-containing protein [Fluviicola taffensis
          DSM 16823]
 gi|327321238|gb|AEA45730.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823]
          Length = 298

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S K I + I    ++  ++ + L+ +  + P +  K +R         P   ++ ++ 
Sbjct: 1  MLSTKIIGQRIADARKKTTISQAQLSERLFISPQAVGKWERGES-----MPDIITLNRLS 55

Query: 63 AAT 65
             
Sbjct: 56 EIL 58


>gi|331699234|ref|YP_004335473.1| helix-turn-helix domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953923|gb|AEA27620.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 196

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 41/136 (30%), Gaps = 9/136 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  +    +LT + L+R  G+  ++ ++ +        R  + E +  I  A   
Sbjct: 14  RVGPRLAELRRERDLTLAALSRTTGISTSTLSRLESGH-----RRATLELLLPIARAYGV 68

Query: 68  TICQLLDLPFSDGRTTEK---KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
            +  L+    S      +     +    + +P +             G       +    
Sbjct: 69  GLDDLVGAEPSVPDPRVRGLEPIRTGSAVAYPLTRGPVQPRPYRLVYGPGLECTEL-RTH 127

Query: 125 SPHNGIYAIQTQDTRH 140
                +Y +  + T  
Sbjct: 128 EGFEWVYVLSGRLTLL 143


>gi|314934990|ref|ZP_07842349.1| signal peptidase I [Staphylococcus caprae C87]
 gi|313652920|gb|EFS16683.1| signal peptidase I [Staphylococcus caprae C87]
          Length = 191

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                SM P +   D ++++   +    +N GD ++      D   K LI + G +++
Sbjct: 31  TVSGESMHPTFEDRDRVMVSRISKTLNHINSGDVVIFHATKKDDYIKRLIGKPGDTVE 88


>gi|238852875|ref|ZP_04643280.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4]
 gi|238834569|gb|EEQ26801.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4]
          Length = 335

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 54/188 (28%), Gaps = 14/188 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I  + +++NL+  GLA K  +   + +K +          P  E I  +      
Sbjct: 2   RLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSI-----PDIEKIVNLSELFGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE---- 122
           T   LL           +    +  L          +  +       +   + +      
Sbjct: 57  TTDYLLKSGEPSFEFKNEDINDKDKLPVLSDELVRKYLTASRKNAKFRALAIALIIFGLA 116

Query: 123 -IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
            I       Y++ T+    K     +  +      ++    I +  G  +       +  
Sbjct: 117 CICFTRALRYSLDTKYFLEK-YGDRLTSIVSTIGYILFIITIAIAVGLFVYSIMNVRE-- 173

Query: 182 AKVLISRR 189
            K L  + 
Sbjct: 174 FKQLKKQN 181


>gi|240144766|ref|ZP_04743367.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|257203287|gb|EEV01572.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
          Length = 94

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E + ++    NLT   LA + G+  ++ +  +        R P+ +++ K     + 
Sbjct: 2  NLGEKLKQLRLEKNLTQKQLADRLGVAISAISSYESDT-----RCPTFDTLIKYARIFHV 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|210634337|ref|ZP_03298073.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM
          13279]
 gi|210158864|gb|EEA89835.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM
          13279]
          Length = 68

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 15/43 (34%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          +  ++    +   L+ + LA   G+   + +  +        +
Sbjct: 7  LKNSLRAARKERGLSQAQLAEMTGVSRNTISSIETGQFNPTAK 49


>gi|187921632|ref|YP_001890664.1| XRE family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187720070|gb|ACD21293.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
           PsJN]
          Length = 212

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     +T   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 34  RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  L     +          EIP L    +         +   G  +    +
Sbjct: 89  SLDSLFAPQKTPEAIAVSGPHEIPTLSGHDAKYQLRVWGPIELAGK-FEWYEL 140


>gi|160895181|ref|ZP_02075954.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50]
 gi|156863215|gb|EDO56646.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50]
          Length = 101

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       I E I  + E   +T S LA    +  ++ N  K    +     PS +++  
Sbjct: 1  MVM----DISERIRELREVIGITQSNLASALNISRSAVNAWKMGTSK-----PSIDTLVD 51

Query: 61 ILAATNET 68
          +    + +
Sbjct: 52 LADFFHVS 59


>gi|149919009|ref|ZP_01907494.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149820162|gb|EDM79581.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 125

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +    I  +     LT   LA ++GL   S    +          PS  ++ K+    + 
Sbjct: 13 RFGRHIRALRSERGLTQELLAERSGLSADSVRSLENGKF-----SPSRGTLRKLCTGLDL 67

Query: 68 TICQLLDLPFSDGRTTEKK 86
           +     L  + GR  E +
Sbjct: 68 QMSTFFLLYETGGRRGEHE 86


>gi|118476368|ref|YP_893519.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415593|gb|ABK84012.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 75

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41


>gi|158320084|ref|YP_001512591.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158140283|gb|ABW18595.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 115

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + E   L+   LA+   +  ++ +  +        R P  E I KI    N T
Sbjct: 2  LGDKIKLLREDRGLSQLELAKILEVGNSTLSMYESNT-----RKPDYEVIKKIADYFNVT 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
             LL L     +    +  E       
Sbjct: 57 TDYLLGLTEVPNQQYHDQILEDYPEIIS 84


>gi|16973422|gb|AAL32284.1|AF118548_4 hypothetical protein [Brucella abortus]
          Length = 650

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   + R+ +R  LT  GLA  + +   + +  +          P  E+++ +  A   
Sbjct: 6  EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWSLANALGI 60

Query: 68 TICQ 71
             +
Sbjct: 61 EFGE 64


>gi|49183677|ref|YP_026929.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49480249|ref|YP_034942.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|49177604|gb|AAT52980.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49331805|gb|AAT62451.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
          Length = 75

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41


>gi|9632445|ref|NP_049417.1| putative cro-like regulatory protein [Streptococcus phage DT1]
 gi|4530165|gb|AAD21905.1| putative cro-like regulatory protein [Streptococcus phage DT1]
          Length = 67

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  +  RH+LT    A+  G  P + +  ++  +    +     ++ KI    +     L
Sbjct: 10 IKELRARHDLTQEEFAKSVGTTPQTVSAWEKNVLSISPK-----NMAKICNKYHIHSSDL 64

Query: 73 L 73
           
Sbjct: 65 Y 65


>gi|58040192|ref|YP_192156.1| hypothetical protein GOX1761 [Gluconobacter oxydans 621H]
 gi|58002606|gb|AAW61500.1| Hypothetical protein GOX1761 [Gluconobacter oxydans 621H]
          Length = 203

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           ++   I  + E   L+   LA K G+  ++    +    
Sbjct: 82  ELGRRIRLLREMAGLSQQQLADKVGISRSAVAFWETGRS 120


>gi|52144624|ref|YP_082203.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51978093|gb|AAU19643.1| transcriptional regulator [Bacillus cereus E33L]
          Length = 75

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41


>gi|42779831|ref|NP_977078.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|42735748|gb|AAS39686.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 75

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41


>gi|99082554|ref|YP_614708.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038834|gb|ABF65446.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
           sp. TM1040]
          Length = 204

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 42/137 (30%), Gaps = 6/137 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +   +  AI +  ++  LT   L+ ++G+     ++ +R         PS  ++ +I AA
Sbjct: 8   TEPNVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNAT-----PSLGTLAQISAA 62

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
            +  +   +         T    + +  L                   + +  + +P   
Sbjct: 63  LDVGLDYFISASKPSDGLTRSGSRPLFALDDSSLRYEALGADFPGSEMSAYI-LHIPPGY 121

Query: 125 SPHNGIYAIQTQDTRHK 141
                 +  +      +
Sbjct: 122 VSETVHHEGEEIIFILE 138


>gi|47568815|ref|ZP_00239509.1| transcriptional regulator, Cro/CI family-related protein
          [Bacillus cereus G9241]
 gi|222094439|ref|YP_002528498.1| DNA-binding protein [Bacillus cereus Q1]
 gi|47554491|gb|EAL12848.1| transcriptional regulator, Cro/CI family-related protein
          [Bacillus cereus G9241]
 gi|221238496|gb|ACM11206.1| DNA-binding protein [Bacillus cereus Q1]
          Length = 75

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 41


>gi|332982308|ref|YP_004463749.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332699986|gb|AEE96927.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 126

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          ++E +  + +   +T   LA   G+  ++ +  +        R P  ++I ++    N +
Sbjct: 2  LYERLVELRKERKMTQEELANVLGISRSALSLYETD-----KRQPDFQTICRLADFFNVS 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          +  LL              K      F 
Sbjct: 57 VDYLLGRTDDRCGVARTTYKAGNKADFI 84


>gi|329890393|ref|ZP_08268736.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
 gi|328845694|gb|EGF95258.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
          Length = 476

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +   + R+    +L+ + +A   G+ P+  N  +R       R  S + + ++  
Sbjct: 11 LGGRLKRLRRELDLSQTAMAADLGVSPSYLNHIERNQ-----RPVSAQLLLRLAE 60


>gi|306825023|ref|ZP_07458366.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
          73H25AP]
 gi|304432850|gb|EFM35823.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
          73H25AP]
          Length = 74

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA   G+   +    +          PS E   KI 
Sbjct: 1  MTKESKIITNLKSVRESTGMTQQELADLIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|319762972|ref|YP_004126909.1| hypothetical protein Alide_2286 [Alicycliphilus denitrificans BC]
 gi|330825052|ref|YP_004388355.1| XRE family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317117533|gb|ADV00022.1| Protein of unknown function DUF2083,transcriptional regulator
           [Alicycliphilus denitrificans BC]
 gi|329310424|gb|AEB84839.1| transcriptional regulator, XRE family [Alicycliphilus denitrificans
           K601]
          Length = 478

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + E+  LT + LA+   + P+  N+ +        R  +   + ++ AA    + Q 
Sbjct: 5   LKTLREQRGLTQAALAQALKVSPSYLNQIENNQ-----RPLTVNVLLRLQAAFGIDLQQF 59

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            +   +      +              +     +   P 
Sbjct: 60  SEDSQARQLGQLRSALADMPGGDQVPLAETRILAEQLPA 98


>gi|296269505|ref|YP_003652137.1| XRE family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296092292|gb|ADG88244.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
           43833]
          Length = 411

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 41/133 (30%), Gaps = 4/133 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT          +  + +R  ++   LA + G   +  ++ +R              I  
Sbjct: 1   MTDLEGLTFGARVKELRQRRGMSQKELAAEVGRSESWVSQVERDVQPVE----RLSVIQA 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +  A   ++  L     S    +++  ++  L     + +G      +         + V
Sbjct: 57  LANALGVSVQVLRPEASSSAPGSQQTVEKNDLDGLRMALTGHPALPVLIEAEEPAQVIDV 116

Query: 121 PEIRSPHNGIYAI 133
             +    +  +A+
Sbjct: 117 DALSHGVDRAWAL 129


>gi|228950524|ref|ZP_04112674.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228809160|gb|EEM55631.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
          Length = 114

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + ++ +  +LT + LA    L  +     +    +     P  E++  I +  N +
Sbjct: 5  GQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQ-----PDIETLASIASFFNVS 58


>gi|229164709|ref|ZP_04292573.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803]
 gi|228618789|gb|EEK75751.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803]
          Length = 421

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 29/216 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  + ++  LT   LA    +  +  ++ ++  I+     PS E +  +    N +
Sbjct: 2   LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQ-----PSYEVLEALSNKLNCS 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +    D+  +         +    +    + +       V     + N    P++     
Sbjct: 56  VEDFFDVVEN---KELTLSQIKKDIKAAENHTTANLWDKVKNFIEQKNYFNHPDVNKYDE 112

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRL---LIKPRTGDIVA 182
           GI                        +  I      +     G+ +   +    +   + 
Sbjct: 113 GILN--------WIHGKYYEH-IHDFNHAIPYFTKSISLLKEGNYVNELVRSLDSLGYL- 162

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                       L +LN  Y +       I  I R+
Sbjct: 163 --YSRINNHETALSTLNRAYKIII--HEQISGILRV 194


>gi|228475756|ref|ZP_04060474.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|314935413|ref|ZP_07842766.1| putative transcriptional regulator [Staphylococcus hominis subsp.
          hominis C80]
 gi|228270538|gb|EEK11973.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|313656748|gb|EFS20487.1| putative transcriptional regulator [Staphylococcus hominis subsp.
          hominis C80]
          Length = 67

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R     + LA+KAG+   + +  +R         PS  +  KI    N
Sbjct: 3  NRLKELRAREGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAIKIARIFN 53


>gi|206975303|ref|ZP_03236217.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97]
 gi|206746724|gb|EDZ58117.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97]
          Length = 421

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 29/216 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  + ++  LT   LA    +  +  ++ ++  I+     PS E +  +    N +
Sbjct: 2   LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQ-----PSYEVLEALSNKLNCS 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +    D+  +         +    +    + +       V     + N    P++     
Sbjct: 56  VEDFFDVVEN---KELTLSQIKKDIKAAENHTTANLWDKVKNFIEQKNYFNHPDVNKYDE 112

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRL---LIKPRTGDIVA 182
           GI                        +  I      +     G+ +   +    +   + 
Sbjct: 113 GILN--------WIHGKYYEH-IHDFNHAIPYFTKSISLLKEGNYVNELVRSLDSLGYL- 162

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                       L +LN  Y +       I  I R+
Sbjct: 163 --YSRINNHETALSTLNRAYKIII--HEQISGILRV 194


>gi|154501006|ref|ZP_02039044.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC
          29799]
 gi|150270030|gb|EDM97549.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC
          29799]
          Length = 297

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + +   +T   LA K  +   + +K +R         P    +  +  A   ++  L
Sbjct: 10 IRDLRKEKGMTQKELADKLHITDRAVSKWERGLC-----APEISLLEPLAEALGCSVLDL 64

Query: 73 LDLPFS-DGRTTEKKEKEIPLLYFP 96
          +    +     ++++ +   +L++ 
Sbjct: 65 MAGERTAKAADSQEEARTRDVLHYS 89


>gi|44004506|ref|NP_982174.1| helix-turn-helix/TPR domain-containing protein [Bacillus cereus
           ATCC 10987]
 gi|190015190|ref|YP_001966786.1| putative transcriptional regulator [Bacillus cereus]
 gi|190015455|ref|YP_001967110.1| putative transcriptional regulator [Bacillus cereus]
 gi|218848240|ref|YP_002455177.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820]
 gi|229113469|ref|ZP_04242919.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15]
 gi|296506587|ref|YP_003667821.1| helix-turn-helix/TPR domain-containing protein [Bacillus
           thuringiensis BMB171]
 gi|42741572|gb|AAS45017.1| helix-turn-helix/TPR domain protein [Bacillus cereus ATCC 10987]
 gi|116584866|gb|ABK00981.1| putative transcriptional regulator [Bacillus cereus]
 gi|116585136|gb|ABK01245.1| putative transcriptional regulator [Bacillus cereus]
 gi|218540291|gb|ACK92687.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820]
 gi|228669987|gb|EEL25380.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15]
 gi|296327174|gb|ADH10101.1| helix-turn-helix/TPR domain-containing protein [Bacillus
           thuringiensis BMB171]
          Length = 421

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 29/216 (13%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  + ++  LT   LA    +  +  ++ ++  I+     PS E +  +    N +
Sbjct: 2   LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQ-----PSYEVLEALSNKLNCS 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +    D+  +         +    +    + +       V     + N    P++     
Sbjct: 56  VEDFFDVVEN---KELTLSQIKKDIKAAENHTTANLWDKVKNFIEQKNYFNHPDVNKYDE 112

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV---NCGDRL---LIKPRTGDIVA 182
           GI                        +  I      +     G+ +   +    +   + 
Sbjct: 113 GILN--------WIHGKYYEH-IHDFNHAIPYFTKSISLLKEGNYVNELVRSLDSLGYL- 162

Query: 183 KVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
                       L +LN  Y +       I  I R+
Sbjct: 163 --YSRINNHETALSTLNRAYKIII--HEQISGILRV 194


>gi|116629447|ref|YP_814619.1| Signal peptidase I [Lactobacillus gasseri ATCC 33323]
 gi|116095029|gb|ABJ60181.1| Signal peptidase I [Lactobacillus gasseri ATCC 33323]
          Length = 216

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186
            + +             SM P +   D +I     ++  GD +++      G +  K +I
Sbjct: 31  FFVLNKFVFANLTVSGISMQPTFENNDRVIALRHAKIKQGDIVIVDAPDEPGALYIKRVI 90

Query: 187 SRRGRSID 194
              G ++ 
Sbjct: 91  GLPGDTVV 98


>gi|329116487|ref|ZP_08245204.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD
           2020]
 gi|326906892|gb|EGE53806.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD
           2020]
          Length = 121

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 6/112 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   I ++ E  N+    LA   G    ++ +K +          P+   + K+  A N
Sbjct: 9   EVGRRIKQLRESRNIEQLELAELMGYKSQSTISKWESGTN-----LPNGGKLVKLAKALN 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            T   +L     + +      K  P       G         F      + +
Sbjct: 64  TTTDNILFGSEIERKEETIDLKNTPAKRVAFDGRVFDESDMDFMNSMMESYL 115


>gi|325478584|gb|EGC81696.1| signal peptidase I [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 193

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 23/119 (19%)

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN----SAIQVNCG 168
           + W+ V    +      I+         K    SML     GDIL+++           G
Sbjct: 16  DVWDWVKTIAVAL-IITIFIKMFIVDATKVSGNSMLNTLHNGDILLVDKIGSRFRGYERG 74

Query: 169 DRLLIK--PRTGDIVAKVLISRRGRSIDLM----------------SLNCCYPVDTVEM 209
           D +++K       +  K +I  +G +I L+                S+N  YP   +  
Sbjct: 75  DIVILKAPDDPKKLYVKRVIGEKGDTIKLVDGDVYVNDEKITENYTSINETYPTRELSE 133


>gi|300702662|ref|YP_003744262.1| transcriptional regulator protein [Ralstonia solanacearum
          CFBP2957]
 gi|299070323|emb|CBJ41615.1| putative transcription regulator protein [Ralstonia solanacearum
          CFBP2957]
          Length = 209

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +++I   +  +      T   LA + G+  +  +  +R         P+   + K+ A  
Sbjct: 17 NERIARRVRELRATRGYTLDALAARCGVSRSMISLIERGAA-----SPTAAVLDKLAAGL 71

Query: 66 NET 68
            +
Sbjct: 72 GVS 74


>gi|282853817|ref|ZP_06263154.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes J139]
 gi|282583270|gb|EFB88650.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes J139]
          Length = 508

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M + +   +   I    ++H +T + LA       ++ ++ +           S E I +
Sbjct: 1   MDNITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           I  A    I         + R     +    +       +         
Sbjct: 56  ITEALESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 104


>gi|257055461|ref|YP_003133293.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
 gi|256585333|gb|ACU96466.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
          Length = 291

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            AI R+ +   ++   L+++ G    + +           R PS E +  +L        
Sbjct: 23  AAIRRLLDASGMSGRELSQRLGFSHGTVSHWVTG-----RRLPSPEDMASLLTLLGIKGE 77

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           +   L        E     + +   P   +G            +W+   VP +    +  
Sbjct: 78  EKQRLIDLARHAAEPNWLVVGMSGIPQQLAGAIESERHASAMVEWSRDIVPGLLQTADYA 137

Query: 131 YAI 133
            A+
Sbjct: 138 RAL 140


>gi|225571153|ref|ZP_03780151.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM
           15053]
 gi|225159984|gb|EEG72603.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM
           15053]
          Length = 134

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +KI   + +      LT   LA KA +  +  ++ +   I      PS + +  +    
Sbjct: 25  EEKIGFRVKQARLNAGLTQEELAEKANMSSSFISRLENGKI-----LPSIKKLLMLADIM 79

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           N  +  LL   F           E         
Sbjct: 80  NVGLEDLLRDFFRHTGEPSDALTEQIFYQVDMM 112


>gi|153814674|ref|ZP_01967342.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC
          27756]
 gi|317501120|ref|ZP_07959326.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331090138|ref|ZP_08339026.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145848168|gb|EDK25086.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC
          27756]
 gi|316897507|gb|EFV19572.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330402084|gb|EGG81656.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 124

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S+ ++   + R+ + H+ T +  ++K  +   +++  +        R P  + I +I  
Sbjct: 1  MSNIQLAANLQRLRKDHHFTQTQFSKKLNISRQAYSNYETG-----KRIPDLDIIIRIAN 55

Query: 64 ATNET 68
            + +
Sbjct: 56 IYHIS 60


>gi|87199050|ref|YP_496307.1| XRE family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134731|gb|ABD25473.1| transcriptional regulator, XRE family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 464

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 5/129 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     LT   +A + G+ P+     +R       R  + + + ++  A    
Sbjct: 8   LGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQ-----RPLTADLLLRLARAYKLD 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L      D           P+       +    D      G     + +        
Sbjct: 63  MADLAADERDDYARRLSDALRDPIFSDIDLPALEVADVAASFPGVTEAMLRLYGAWQREQ 122

Query: 129 GIYAIQTQD 137
              A Q   
Sbjct: 123 QALAEQRNA 131


>gi|76818409|ref|YP_336666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|126445514|ref|YP_001061010.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126456620|ref|YP_001074047.1| DNA-binding cupin domain-containing protein [Burkholderia
           pseudomallei 1106a]
 gi|167721896|ref|ZP_02405132.1| DNA-binding protein [Burkholderia pseudomallei DM98]
 gi|167847952|ref|ZP_02473460.1| DNA-binding protein [Burkholderia pseudomallei B7210]
 gi|237508050|ref|ZP_04520765.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|242312736|ref|ZP_04811753.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b]
 gi|254185569|ref|ZP_04892156.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|254192180|ref|ZP_04898678.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254264681|ref|ZP_04955546.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a]
 gi|76582882|gb|ABA52356.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|126225005|gb|ABN88510.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126230388|gb|ABN93801.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a]
 gi|157987660|gb|EDO95427.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|184209803|gb|EDU06846.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|235000255|gb|EEP49679.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|242135975|gb|EES22378.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b]
 gi|254215683|gb|EET05068.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a]
          Length = 202

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A
Sbjct: 21  TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              ++ +L   P +          +IP L    +         +   G  +    +
Sbjct: 76  LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130


>gi|134296885|ref|YP_001120620.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140042|gb|ABO55785.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis
           G4]
          Length = 230

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 6/171 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + KI AA   +
Sbjct: 35  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+ + ++      S         P   +++ + +  + +   
Sbjct: 90  VAAFLRRHAVNGFEHLAAERAVRVVSSNGRFSARALYPEGEPAAAEFHELRIAPLHTEPG 149

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              A           + ++         L+      V   D+       GD
Sbjct: 150 TPRA-PGTTINLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199


>gi|332976057|gb|EGK12927.1| DNA-binding protein [Desmospora sp. 8437]
          Length = 184

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I++ I R+      T   L+ + GL  +  ++ +R          +  S+ KI  A  
Sbjct: 7   EEIYQEIKRLRLEQGYTLKVLSERTGLSVSFLSQVERGSS-----SLAITSLKKIADALG 61

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
             I +  +  F+     + +E++   L    +        
Sbjct: 62  VPITRFFEAEFNHNYLLKAEEQKPFRLEGSSAVYTRLNGE 101


>gi|323164377|gb|EFZ50182.1| HTH-type transcriptional regulator hipB [Shigella sonnei 53G]
          Length = 87

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          S  ++  A+  + +++  T S LA+K G+   + +  +  
Sbjct: 8  SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 47


>gi|312863201|ref|ZP_07723439.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
           F0396]
 gi|311100737|gb|EFQ58942.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
           F0396]
          Length = 161

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/133 (9%), Positives = 37/133 (27%), Gaps = 7/133 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA----- 64
              + ++ +   L+ + LA+   +   +  + ++   + +      E + K         
Sbjct: 1   MNNLKKLRQSIGLSQNELAKIFNVSEKTILRWEKGLTDIK--STKAEQLAKYFEVSVPYL 58

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              +  +       D        K +  +               +   +        E+ 
Sbjct: 59  LGFSNYKNKFEVEIDNENGILDNKFLERIIEVVGEESIPIIEKNYIEDSNSPEPDYSELA 118

Query: 125 SPHNGIYAIQTQD 137
           S  N + ++Q  D
Sbjct: 119 SLRNAVVSLQNTD 131


>gi|331673039|ref|ZP_08373816.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli TA280]
 gi|331069818|gb|EGI41196.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli TA280]
          Length = 94

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          S  ++  A+  + +++  T S LA+K G+   + +  +  
Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 54


>gi|301166893|emb|CBW26471.1| putative helix-turn-helix DNA-binding protein [Bacteriovorax
          marinus SJ]
          Length = 189

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  +  + N T   L+  +G+  T+    +          PS  +I K+  A N +
Sbjct: 17 ISHNIKFLRAKRNYTQKQLSEVSGIPRTTLTNIESGEGN-----PSLSNIIKLAKALNVS 71


>gi|300927366|ref|ZP_07143088.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 182-1]
 gi|301326076|ref|ZP_07219476.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 78-1]
 gi|300416689|gb|EFJ99999.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 182-1]
 gi|300847195|gb|EFK74955.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 78-1]
          Length = 98

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          S  ++  A+  + +++  T S LA+K G+   + +  +  
Sbjct: 19 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 58


>gi|284030112|ref|YP_003380043.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283809405|gb|ADB31244.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836]
          Length = 198

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 41/134 (30%), Gaps = 5/134 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++    + R   +  +T +GLA   G+  ++ ++ +      R       ++     A  
Sbjct: 16  EQAGPRLKRFRVQRGITLAGLAAATGISKSTLSRLETGRR--RPTLELLLALSLAFRAPL 73

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           + +    ++     R    + K   ++       G      V P GN    +        
Sbjct: 74  DDLVGAPEVGDPRIRLKPGRVKGRTVIPLTRQPDGMQVWKIVVPAGNV---IPETRAHDG 130

Query: 127 HNGIYAIQTQDTRH 140
           H  IY +       
Sbjct: 131 HEWIYVLSGHLRLV 144


>gi|259417621|ref|ZP_05741540.1| conserved domain protein [Silicibacter sp. TrichCH4B]
 gi|259346527|gb|EEW58341.1| conserved domain protein [Silicibacter sp. TrichCH4B]
          Length = 77

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 5/41 (12%), Positives = 17/41 (41%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          ++   I  + +    + + LA++  +   + N  +R   + 
Sbjct: 13 RMKNNIQELRQIAGWSQAELAKRLNVSRQTVNALERGRYDP 53


>gi|256545793|ref|ZP_05473149.1| Xre family toxin-antitoxin system, antitoxin component
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398489|gb|EEU12110.1| Xre family toxin-antitoxin system, antitoxin component
           [Anaerococcus vaginalis ATCC 51170]
          Length = 144

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I    +  NL+   LA+  GL   S    +   I      PS E+ +KI    ++
Sbjct: 81  EIENRIREFRKEKNLSQHKLAKLVGLKRRSIMAYENNTI-----SPSLETAYKICKVLDK 135

Query: 68  TICQLLDLP 76
            I ++    
Sbjct: 136 DIKEVFIFK 144


>gi|256114435|ref|ZP_05455150.1| hypothetical protein Bmelb3E_16432 [Brucella melitensis bv. 3
          str. Ether]
          Length = 650

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   + R+ +R  LT  GLA  + +   + +  +          P  E+++ +  A   
Sbjct: 6  EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWSLANALGI 60

Query: 68 TICQ 71
             +
Sbjct: 61 EFGE 64


>gi|254819802|ref|ZP_05224803.1| transcriptional regulator, XRE family protein [Mycobacterium
           intracellulare ATCC 13950]
          Length = 138

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E   ++   LA K+G+     ++ +R       R PS + + +I  A   
Sbjct: 21  DIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERG-----LRKPSADVLNQIAKALRV 75

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +   L         T + + ++  +    
Sbjct: 76  SAEVLYVRAGILEPTDKSQVRDAIVTDTA 104


>gi|255103138|ref|ZP_05332115.1| XRE family transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255308330|ref|ZP_05352501.1| XRE family transcriptional regulator [Clostridium difficile ATCC
          43255]
          Length = 121

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + +  ++T   LA   GL P   +  ++       R+P  + I K+    N +
Sbjct: 2  IGYRIKELRKEKDITQKELATFLGLTPKMISFYEK-----EERFPPHDIILKLSDFFNVS 56


>gi|260587216|ref|ZP_05853129.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|283798210|ref|ZP_06347363.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
 gi|260542411|gb|EEX22980.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|291074079|gb|EFE11443.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
          Length = 86

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + ++ +   L+ S LA  AG++   + K ++   +      ST  + +I  A +  + 
Sbjct: 12 EKLQKLRQAAGLSQSQLAEAAGVNVRMYQKYEQGDRDISKAQLST--LLRICKALSCKLS 69

Query: 71 QLLDLPF 77
           ++    
Sbjct: 70 DIVTDAE 76


>gi|194015772|ref|ZP_03054388.1| immunity repressor protein [Bacillus pumilus ATCC 7061]
 gi|194013176|gb|EDW22742.1| immunity repressor protein [Bacillus pumilus ATCC 7061]
          Length = 139

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 4/120 (3%)

Query: 16  MAERHN-LTPSGLARKAGLDPTSFNKSKRFG--IEGRNRWPSTESIFKILAATNETICQL 72
           + +    L+    A++ G+  T   K +       G+   P+ E++  I  A      +L
Sbjct: 8   LIKARGKLSQREAAKRIGISHTYLGKIENGKDPRTGKEIKPTPETLKLISKAYQCDYEEL 67

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFP-PSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           +        +     +   L  +            G+F      +   + E       ++
Sbjct: 68  MIKAGYIDESETSNSESPKLTQYQRKIYEWAKSHDGLFFDSKPEDVEELIEEFEVVYELF 127


>gi|167755905|ref|ZP_02428032.1| hypothetical protein CLORAM_01422 [Clostridium ramosum DSM 1402]
 gi|237734869|ref|ZP_04565350.1| DNA-binding protein [Mollicutes bacterium D7]
 gi|167704844|gb|EDS19423.1| hypothetical protein CLORAM_01422 [Clostridium ramosum DSM 1402]
 gi|229382197|gb|EEO32288.1| DNA-binding protein [Coprobacillus sp. D7]
          Length = 177

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 50/218 (22%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   + R+ + + LT   LA ++ L     ++ +R         PS  ++  IL A   
Sbjct: 2   DIGSKVKRLRQANGLTLEELANRSELTKGFLSQLERDLT-----SPSVATLEDILEALGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +              ++       F  +    +  S + P   K +   +       
Sbjct: 57  NLQEFFSEKE-------AEQLVFKQDDFFENIQDDYKISYIIPNAQKNDMEPILIELEKD 109

Query: 128 NGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                I   + Q+  +  Q                   +++  GD         + V K 
Sbjct: 110 KQSMIIAPHEGQEFGYVVQGR-----------------VKLIYGD--------NEFVLKK 144

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
                G +  L  L   Y        + +  A+++W S
Sbjct: 145 -----GETFYLKGLVSHY---LFNPGETK--AKVIWVS 172


>gi|167462648|ref|ZP_02327737.1| putative prophage repressor [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382850|ref|ZP_08056686.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153179|gb|EFX45633.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 164

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 28/103 (27%), Gaps = 14/103 (13%)

Query: 112 GNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYRKGDILILNSAIQVNCGDR 170
           G +W  + + +                    +  SM+       D+ ++      +    
Sbjct: 58  GERWEDIELTDD------------NYFYILIKKDSMIGDAIMPDDLALIKEEHNEDYFGL 105

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIE 213
                   +   + +  +   SI L   N  +P    +  ++ 
Sbjct: 106 SAGIVDNEECTIRRIYKK-DDSIVLYPSNPTFPPRIFKGQELN 147


>gi|157156109|ref|YP_001462795.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          E24377A]
 gi|194425802|ref|ZP_03058358.1| transcriptional regulator HipB [Escherichia coli B171]
 gi|293409856|ref|ZP_06653432.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          B354]
 gi|293445912|ref|ZP_06662334.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          B088]
 gi|300895880|ref|ZP_07114457.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 198-1]
 gi|331677392|ref|ZP_08378067.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli H591]
 gi|332279321|ref|ZP_08391734.1| transcriptional regulator HipB [Shigella sp. D9]
 gi|157078139|gb|ABV17847.1| transcriptional regulator HipB [Escherichia coli E24377A]
 gi|194415857|gb|EDX32123.1| transcriptional regulator HipB [Escherichia coli B171]
 gi|291322742|gb|EFE62170.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          B088]
 gi|291470324|gb|EFF12808.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          B354]
 gi|300360182|gb|EFJ76052.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 198-1]
 gi|323176608|gb|EFZ62200.1| HTH-type transcriptional regulator hipB [Escherichia coli 1180]
 gi|323964144|gb|EGB59630.1| helix-turn-helix protein [Escherichia coli M863]
 gi|323978317|gb|EGB73403.1| helix-turn-helix protein [Escherichia coli TW10509]
 gi|327254166|gb|EGE65795.1| HTH-type transcriptional regulator hipB [Escherichia coli
          STEC_7v]
 gi|331073852|gb|EGI45172.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli H591]
 gi|332101673|gb|EGJ05019.1| transcriptional regulator HipB [Shigella sp. D9]
          Length = 94

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          S  ++  A+  + +++  T S LA+K G+   + +  +  
Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 54


>gi|157160982|ref|YP_001458300.1| DNA-binding transcriptional regulator HipB [Escherichia coli HS]
 gi|188494966|ref|ZP_03002236.1| transcriptional regulator HipB [Escherichia coli 53638]
 gi|331642092|ref|ZP_08343227.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli H736]
 gi|157066662|gb|ABV05917.1| transcriptional regulator HipB [Escherichia coli HS]
 gi|188490165|gb|EDU65268.1| transcriptional regulator HipB [Escherichia coli 53638]
 gi|315136148|dbj|BAJ43307.1| DNA-binding transcriptional regulator HipB [Escherichia coli DH1]
 gi|331038890|gb|EGI11110.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli H736]
          Length = 94

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          S  ++  A+  + +++  T S LA+K G+   + +  +  
Sbjct: 15 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 54


>gi|149373158|ref|ZP_01892027.1| transcriptional regulator, putative [unidentified eubacterium
          SCB49]
 gi|149354260|gb|EDM42830.1| transcriptional regulator, putative [unidentified eubacterium
          SCB49]
          Length = 68

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + +   ++ + LA K      + N+  R       R PS E ++KI    N ++
Sbjct: 1  MNRIKEVLKDKGISQTWLAEKMEKSYPTINEYARN-----KRQPSLEDLYKIADILNVSV 55

Query: 70 CQ 71
            
Sbjct: 56 SD 57


>gi|114327151|ref|YP_744308.1| MerR family transcriptional regulator [Granulibacter bethesdensis
          CGDNIH1]
 gi|114315325|gb|ABI61385.1| transcriptional regulator, MerR family [Granulibacter
          bethesdensis CGDNIH1]
          Length = 464

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S   I   + R+ +    +   LA + G+  +  N  +        R  +   + K+  
Sbjct: 1  MSRPLIGRTVRRLRQERGESQQSLAVRLGISASYLNLIEHDQ-----RGVTASLLIKLAE 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
               +  L        +T  ++    P+L
Sbjct: 56 TLRVDLRALSGQQERHLQTGLREVFADPML 85


>gi|74312125|ref|YP_310544.1| DNA-binding transcriptional regulator HipB [Shigella sonnei
          Ss046]
 gi|73855602|gb|AAZ88309.1| persistence to inhibition of murein or DNA biosynthesis [Shigella
          sonnei Ss046]
          Length = 88

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          S  ++  A+  + +++  T S LA+K G+   + +  +  
Sbjct: 9  SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 48


>gi|89896146|ref|YP_519633.1| hypothetical protein DSY3400 [Desulfitobacterium hafniense Y51]
 gi|219670564|ref|YP_002460999.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|89335594|dbj|BAE85189.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540824|gb|ACL22563.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 98

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I    +   L+ + L   +G+  T   + +    +     P   +I K+L     
Sbjct: 28 KIVSQIVEARKEKGLSQTELEAISGIKQTHIARLENNRND-----PQLTTILKLLYPLGM 82

Query: 68 T 68
          T
Sbjct: 83 T 83


>gi|191164989|ref|ZP_03026833.1| transcriptional regulator HipB [Escherichia coli B7A]
 gi|193064250|ref|ZP_03045333.1| transcriptional regulator HipB [Escherichia coli E22]
 gi|193066936|ref|ZP_03047905.1| transcriptional regulator HipB [Escherichia coli E110019]
 gi|209918790|ref|YP_002292874.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          SE11]
 gi|218554043|ref|YP_002386956.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          IAI1]
 gi|218695047|ref|YP_002402714.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          55989]
 gi|218704993|ref|YP_002412512.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          UMN026]
 gi|256018271|ref|ZP_05432136.1| DNA-binding transcriptional regulator HipB [Shigella sp. D9]
 gi|260843814|ref|YP_003221592.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          O103:H2 str. 12009]
 gi|260855228|ref|YP_003229119.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          O26:H11 str. 11368]
 gi|260867950|ref|YP_003234352.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          O111:H- str. 11128]
 gi|291282612|ref|YP_003499430.1| transcriptional regulator HipB [Escherichia coli O55:H7 str.
          CB9615]
 gi|293404997|ref|ZP_06648989.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          FVEC1412]
 gi|298380643|ref|ZP_06990242.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          FVEC1302]
 gi|300819520|ref|ZP_07099715.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 107-1]
 gi|300823493|ref|ZP_07103622.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 119-7]
 gi|300903828|ref|ZP_07121734.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 84-1]
 gi|301304868|ref|ZP_07210973.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 124-1]
 gi|307310954|ref|ZP_07590600.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|309796770|ref|ZP_07691174.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 145-7]
 gi|331667908|ref|ZP_08368765.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli TA271]
 gi|331682979|ref|ZP_08383587.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli H299]
 gi|190904761|gb|EDV64466.1| transcriptional regulator HipB [Escherichia coli B7A]
 gi|192929098|gb|EDV82709.1| transcriptional regulator HipB [Escherichia coli E22]
 gi|192959526|gb|EDV89960.1| transcriptional regulator HipB [Escherichia coli E110019]
 gi|209912049|dbj|BAG77123.1| transcriptional repressor [Escherichia coli SE11]
 gi|218351779|emb|CAU97495.1| DNA-binding transcriptional regulator [Escherichia coli 55989]
 gi|218360811|emb|CAQ98378.1| DNA-binding transcriptional regulator [Escherichia coli IAI1]
 gi|218432090|emb|CAR12978.1| DNA-binding transcriptional regulator [Escherichia coli UMN026]
 gi|257753877|dbj|BAI25379.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          O26:H11 str. 11368]
 gi|257758961|dbj|BAI30458.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          O103:H2 str. 12009]
 gi|257764306|dbj|BAI35801.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          O111:H- str. 11128]
 gi|290762485|gb|ADD56446.1| transcriptional regulator HipB [Escherichia coli O55:H7 str.
          CB9615]
 gi|291427205|gb|EFF00232.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          FVEC1412]
 gi|298278085|gb|EFI19599.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          FVEC1302]
 gi|300404157|gb|EFJ87695.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 84-1]
 gi|300523963|gb|EFK45032.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 119-7]
 gi|300527927|gb|EFK48989.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 107-1]
 gi|300839892|gb|EFK67652.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 124-1]
 gi|306909132|gb|EFN39628.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|308119652|gb|EFO56914.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 145-7]
 gi|315060784|gb|ADT75111.1| DNA-binding transcriptional regulator [Escherichia coli W]
 gi|315253931|gb|EFU33899.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 85-1]
 gi|320201790|gb|EFW76366.1| HipB protein [Escherichia coli EC4100B]
 gi|320636943|gb|EFX06808.1| antitoxin HipB [Escherichia coli O157:H7 str. G5101]
 gi|320642298|gb|EFX11591.1| antitoxin HipB [Escherichia coli O157:H- str. 493-89]
 gi|320647650|gb|EFX16407.1| antitoxin HipB [Escherichia coli O157:H- str. H 2687]
 gi|320653282|gb|EFX21421.1| antitoxin HipB [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658891|gb|EFX26521.1| antitoxin HipB [Escherichia coli O55:H7 str. USDA 5905]
 gi|320663725|gb|EFX30957.1| antitoxin HipB [Escherichia coli O157:H7 str. LSU-61]
 gi|323156597|gb|EFZ42742.1| HTH-type transcriptional regulator hipB [Escherichia coli
          EPECa14]
 gi|323185981|gb|EFZ71338.1| HTH-type transcriptional regulator hipB [Escherichia coli 1357]
 gi|323378649|gb|ADX50917.1| helix-turn-helix domain protein [Escherichia coli KO11]
 gi|323947903|gb|EGB43899.1| helix-turn-helix protein [Escherichia coli H120]
 gi|324020293|gb|EGB89512.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 117-3]
 gi|324119293|gb|EGC13180.1| helix-turn-helix protein [Escherichia coli E1167]
 gi|331064872|gb|EGI36774.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli TA271]
 gi|331079800|gb|EGI50990.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli H299]
          Length = 88

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          S  ++  A+  + +++  T S LA+K G+   + +  +  
Sbjct: 9  SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 48


>gi|16129467|ref|NP_416025.1| antitoxin of HipAB toxin-antitoxin system [Escherichia coli str.
          K-12 substr. MG1655]
 gi|89108350|ref|AP_002130.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. W3110]
 gi|170020162|ref|YP_001725116.1| DNA-binding transcriptional regulator HipB [Escherichia coli ATCC
          8739]
 gi|170081176|ref|YP_001730496.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. DH10B]
 gi|194436483|ref|ZP_03068584.1| transcriptional regulator HipB [Escherichia coli 101-1]
 gi|238900728|ref|YP_002926524.1| DNA-binding transcriptional regulator [Escherichia coli BW2952]
 gi|253773522|ref|YP_003036353.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161566|ref|YP_003044674.1| DNA-binding transcriptional regulator HipB [Escherichia coli B
          str. REL606]
 gi|256022812|ref|ZP_05436677.1| DNA-binding transcriptional regulator HipB [Escherichia sp.
          4_1_40B]
 gi|297516085|ref|ZP_06934471.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          OP50]
 gi|300917815|ref|ZP_07134458.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 115-1]
 gi|300929036|ref|ZP_07144532.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 187-1]
 gi|300950984|ref|ZP_07164859.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 116-1]
 gi|300958993|ref|ZP_07171092.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 175-1]
 gi|301021631|ref|ZP_07185624.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 196-1]
 gi|301644694|ref|ZP_07244675.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 146-1]
 gi|307138159|ref|ZP_07497515.1| DNA-binding transcriptional regulator HipB [Escherichia coli
          H736]
 gi|123131|sp|P23873|HIPB_ECOLI RecName: Full=HTH-type transcriptional regulator hipB
 gi|222143086|pdb|3DNV|B Chain B, Mdt Protein
 gi|222143089|pdb|3DNW|B Chain B, Structure Of Mdt Protein
 gi|254839184|pdb|2WIU|B Chain B, Mercury-Modified Bacterial Persistence Regulator Hipba
 gi|254839186|pdb|2WIU|D Chain D, Mercury-Modified Bacterial Persistence Regulator Hipba
 gi|254839585|pdb|3HZI|B Chain B, Structure Of Mdt Protein
 gi|146353|gb|AAA56877.1| hipB [Escherichia coli]
 gi|1742468|dbj|BAA15180.1| DNA-binding transcriptional regulator [Escherichia coli str. K12
          substr. W3110]
 gi|1787786|gb|AAC74581.1| antitoxin of HipAB toxin-antitoxin system [Escherichia coli str.
          K-12 substr. MG1655]
 gi|169755090|gb|ACA77789.1| transcriptional regulator, XRE family [Escherichia coli ATCC
          8739]
 gi|169889011|gb|ACB02718.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. DH10B]
 gi|194424515|gb|EDX40501.1| transcriptional regulator HipB [Escherichia coli 101-1]
 gi|238860950|gb|ACR62948.1| DNA-binding transcriptional regulator [Escherichia coli BW2952]
 gi|242377258|emb|CAQ31997.1| hipB, subunit of HipB dimer and HipB transcriptional repressor
          complex [Escherichia coli BL21(DE3)]
 gi|253324566|gb|ACT29168.1| transcriptional regulator, XRE family [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973467|gb|ACT39138.1| DNA-binding transcriptional regulator [Escherichia coli B str.
          REL606]
 gi|253977678|gb|ACT43348.1| DNA-binding transcriptional regulator [Escherichia coli
          BL21(DE3)]
 gi|260449370|gb|ACX39792.1| transcriptional regulator, XRE family [Escherichia coli DH1]
 gi|299881522|gb|EFI89733.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 196-1]
 gi|300314396|gb|EFJ64180.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 175-1]
 gi|300414966|gb|EFJ98276.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 115-1]
 gi|300449742|gb|EFK13362.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 116-1]
 gi|300462996|gb|EFK26489.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 187-1]
 gi|301076978|gb|EFK91784.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 146-1]
 gi|309701770|emb|CBJ01082.1| putative HipB DNA-binding transcriptional regulator [Escherichia
          coli ETEC H10407]
 gi|315619518|gb|EFV00045.1| HTH-type transcriptional regulator hipB [Escherichia coli 3431]
 gi|323937336|gb|EGB33614.1| helix-turn-helix protein [Escherichia coli E1520]
 gi|323942054|gb|EGB38231.1| helix-turn-helix protein [Escherichia coli E482]
 gi|323962280|gb|EGB57869.1| helix-turn-helix protein [Escherichia coli H489]
 gi|323973743|gb|EGB68918.1| helix-turn-helix protein [Escherichia coli TA007]
 gi|332343189|gb|AEE56523.1| transcriptional regulator protein HipB [Escherichia coli UMNK88]
          Length = 88

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          S  ++  A+  + +++  T S LA+K G+   + +  +  
Sbjct: 9  SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 48


>gi|325288703|ref|YP_004264884.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|325290739|ref|YP_004266920.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|325291076|ref|YP_004267257.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|325291248|ref|YP_004267429.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324964104|gb|ADY54883.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324966140|gb|ADY56919.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324966477|gb|ADY57256.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324966649|gb|ADY57428.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 144

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +K+ E I       N   + L R  G+   + ++          R P T S++KI 
Sbjct: 1  MIEIEKVGERIAARLAELNQIQADLCRATGMSNNAISQYVTG-----KRTPDTLSLYKIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          ++   ++  +L      GR     E+   + 
Sbjct: 56 SSLGVSMEWILTGENKQGRVNTTNERAGLME 86


>gi|313906487|ref|ZP_07839821.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313468677|gb|EFR64045.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 101

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E +  +   + +T   LA K G+   + +  +          P+ ES+ KI  A   
Sbjct: 35 EIREMVIELRHDNQMTQKELAVKCGITQANISNLENGTTR-----PTIESLKKIADALGM 89


>gi|298244517|ref|ZP_06968323.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
 gi|297551998|gb|EFH85863.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
          Length = 313

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 8/132 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + ++ E    + + +A + G D T+ ++ +R        +   E +  +    N    
Sbjct: 5   HRLRQVRELRGWSQAKVAEQIGTDATTVSRWERGLFSPTPYF--REKLCALFDQ-NAEEL 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            LL+                P        + G                 +P +      I
Sbjct: 62  GLLESSRRLCEEGCGDLPLQPPGILSSPHAHGER-----SREEICEEEAIPPVVPSCTYI 116

Query: 131 YAIQTQDTRHKT 142
             I+        
Sbjct: 117 VHIRPDHRTLGI 128


>gi|291616809|ref|YP_003519551.1| YdcN [Pantoea ananatis LMG 20103]
 gi|291151839|gb|ADD76423.1| YdcN [Pantoea ananatis LMG 20103]
 gi|327393235|dbj|BAK10657.1| transcriptional regulator YdcN [Pantoea ananatis AJ13355]
          Length = 187

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 33/123 (26%), Gaps = 6/123 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58
           + +++   +  +  +   +   L+   G+   + ++ +R          +        ++
Sbjct: 6   TEQRLAARLAELRMKQGWSLDELSTATGISRPTLSRIERAETSPTAALLNRLCVAYSLTM 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            ++L+        L+          E        +  P          G    G +    
Sbjct: 66  SRLLSEVEAESDLLIPRERQPIWNDEASGFSRRNVSPPAHNFRCELIEGTLRPGARVEYD 125

Query: 119 GVP 121
             P
Sbjct: 126 APP 128


>gi|259046980|ref|ZP_05737381.1| Cro/CI family transcriptional regulator [Granulicatella adiacens
          ATCC 49175]
 gi|259036423|gb|EEW37678.1| Cro/CI family transcriptional regulator [Granulicatella adiacens
          ATCC 49175]
          Length = 69

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   +  + E   +T   LA K G+   +    +          PS E   KI      
Sbjct: 3  KILTNLKAIREDSRMTQQELADKIGVRRETILHLENNRYN-----PSLEMALKIARVFGM 57

Query: 68 TICQLLDLPF 77
          ++  +  L  
Sbjct: 58 SVEDIFRLNE 67


>gi|194015481|ref|ZP_03054097.1| YvaO [Bacillus pumilus ATCC 7061]
 gi|194012885|gb|EDW22451.1| YvaO [Bacillus pumilus ATCC 7061]
          Length = 134

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 2/124 (1%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + E   ++ + LA  +G+     ++ +     G  +  + + +   L    E +
Sbjct: 5   GEQLRILRENRKMSVNQLAMYSGVSAAGISRIENGKR-GVPKPLTIKKLAHALKVPYEDL 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             L      +     K + E  L  +  +         +F  G+ W  +   +I   +  
Sbjct: 64  MLLAGHIEQEQVHEMKPKYESMLKIYQTALQKDVEHLPIFD-GDLWERLSAQDISQLNEY 122

Query: 130 IYAI 133
              +
Sbjct: 123 FLTL 126


>gi|172041518|ref|YP_001801232.1| HTH family transcriptional regulator [Corynebacterium urealyticum
           DSM 7109]
 gi|171852822|emb|CAQ05798.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium
           urealyticum DSM 7109]
          Length = 514

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 33/125 (26%), Gaps = 5/125 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++ +  +++ + LA   GL  +  N+ +        R  +   + KI  A    
Sbjct: 35  VGSRLRQLRKERDISQAQLATTLGLSASYVNQIEHDQ-----RPLTLAVLQKITRAFGVD 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                +          +       ++  P       +            V +       +
Sbjct: 90  ATFFANEDSLRLLAEVQDVMADRDIWPTPVDVTELAELVRHHPAIARAMVDMHSRYRNVS 149

Query: 129 GIYAI 133
               +
Sbjct: 150 DKLTL 154


>gi|169351502|ref|ZP_02868440.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM
          1552]
 gi|169291724|gb|EDS73857.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM
          1552]
          Length = 73

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +  + +  +  + N++   LA + GL     +  +R       R  S +SI KI      
Sbjct: 10 RFGQRVKELRLKQNISQEELAFRCGLSKNYISDVERGT-----RNISLKSIEKIADGLAI 64

Query: 68 TICQLLDLP 76
           I +L +  
Sbjct: 65 RIKELFEFK 73


>gi|168185803|ref|ZP_02620438.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
 gi|169296146|gb|EDS78279.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
          Length = 221

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 11/214 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL----- 62
           ++   I     + N+T   LARK G+      + +    +        E I K+L     
Sbjct: 3   RVGSKIRDARLKANVTEKQLARKIGVAEKFIKEVESG--KKVINESVMEKISKVLGKDLN 60

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
             T     ++ +      +   K EK   +                +          +P 
Sbjct: 61  DVTMSFEAEVYEEEKVQTKKNNKLEKINDIWDDALGSVLKPVPVYGYDMARIIEMRKLPI 120

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
           I +   G    + +    K +D  M+     KGDI       ++      L++    +  
Sbjct: 121 INNKVEGH--AKDKVLYLKVEDDDMVGSRIAKGDIAFGYITHEIINNSLCLVEYN-DERH 177

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
            + +       + L+S       +TV + DI+ +
Sbjct: 178 IRQIKRLDSNKLLLISNGNSLRTETVTVRDIKVL 211


>gi|161619771|ref|YP_001593658.1| hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365]
 gi|163845428|ref|YP_001623083.1| hypothetical protein BSUIS_B1330 [Brucella suis ATCC 23445]
 gi|254703616|ref|ZP_05165444.1| hypothetical protein Bsuib36_06776 [Brucella suis bv. 3 str. 686]
 gi|260568922|ref|ZP_05839390.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|161336582|gb|ABX62887.1| Hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365]
 gi|163676151|gb|ABY40261.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|260154306|gb|EEW89388.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
          Length = 650

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   + R+ +R  LT  GLA  + +   + +  +          P  E+++ +  A   
Sbjct: 6  EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWSLANALGI 60

Query: 68 TICQ 71
             +
Sbjct: 61 EFGE 64


>gi|124267559|ref|YP_001021563.1| XRE family transcriptional regulator [Methylibium petroleiphilum
          PM1]
 gi|124260334|gb|ABM95328.1| transcriptional regulator, XRE family [Methylibium petroleiphilum
          PM1]
          Length = 107

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++ E +  + +   LT   LA  AGL  +   + +    +     PS E +  +  A  
Sbjct: 4  RLGEKLRELRKERKLTLEKLADAAGLSKSYLWELENRESQ----RPSAEKLTALADALG 58


>gi|302334962|ref|YP_003800169.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
 gi|301318802|gb|ADK67289.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
          Length = 198

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +  + +   LT   LA +  +   + +  +         +P  ES+       + 
Sbjct: 2  EIGQRMRALRQGAGLTQDELAERLYVSRQTISNWETGKS-----YPDVESVSLACDLFDV 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|299768500|ref|YP_003730526.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1]
 gi|298698588|gb|ADI89153.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1]
          Length = 183

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 17/142 (11%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             H  +   I  + +  +L+   LA +AG+   +    +   +       S   +  I A
Sbjct: 8   LQH--VGTNIRSLRDERDLSQQDLADQAGVSRRTIAALETGQVN-----ISLAKLDAIAA 60

Query: 64  ATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                   ++  P    +          EK+E     L   PS S     +     G  +
Sbjct: 61  VLGVDFRTIVSAPEHKEQALVNALAWQGEKEESRATFLASVPSRSQVELWTWSLAVGESY 120

Query: 116 NTVGVPEIRSPHNGIYAIQTQD 137
                PE       IY ++ + 
Sbjct: 121 VAEADPEGW--QELIYVLEGEL 140


>gi|296268292|ref|YP_003650924.1| helix-turn-helix domain-containing protein [Thermobispora bispora
          DSM 43833]
 gi|296091079|gb|ADG87031.1| helix-turn-helix domain protein [Thermobispora bispora DSM 43833]
          Length = 370

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+S   ++I E + +      L+   LA+K  LD T   K +       +R      + +
Sbjct: 7  MSSLDWQEIGERVRQARLAKGLSQLQLAQKVDLDRTMITKIEAG-----SRRLDALELAR 61

Query: 61 ILAAT 65
          +  A 
Sbjct: 62 LAQAL 66


>gi|296170806|ref|ZP_06852377.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894542|gb|EFG74280.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 177

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 47/184 (25%), Gaps = 24/184 (13%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN------ 66
           +  +  +  LT   LA + GL  +  +K +R     R   PS     K+  A +      
Sbjct: 5   LRAVRTQRGLTLEALAERTGLTKSYLSKIER-----RQSTPSIAVALKVAKALDVDVGQL 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +  +  +    D        +   +L     G            G   +    PE    
Sbjct: 60  FSDEEAREKIAVDRAPAGADGQRYRVLASSLLGKSMSPFVVRPTEGPADD--PHPE-HGG 116

Query: 127 HNGIYAIQTQDTRHKTQ-------DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              ++                     S    Y    +     ++     + L++    G 
Sbjct: 117 QEFLFVHAGSVELGYGDQTITLGAGDS---AYFDASVAHTIRSVGARPAEVLVVAHEPGG 173

Query: 180 IVAK 183
              +
Sbjct: 174 RTLR 177


>gi|282162048|gb|ADA79912.1| hypothetical protein CU5_34 [Lactobacillus phage phiPYB5]
          Length = 114

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 1  MTSFS---HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
          M   S   +K++    I        ++   LA K GL  T+ +   +        +P  +
Sbjct: 1  MQKLSDLGNKEVMAQNIQHYMNEWGISRKELANKLGLSYTTLSSWLQADS-----YPRID 55

Query: 57 SIFKILAATNETICQLLDLPFSDGRTT 83
           I K+      +   L++   +D R  
Sbjct: 56 KIEKMANFFQISKADLVERHQNDDRPA 82


>gi|289193031|ref|YP_003458972.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
           FS406-22]
 gi|288939481|gb|ADC70236.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
           FS406-22]
          Length = 165

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
                +   + I    E+  L+   LA+K  +  ++  K +R+ +E   R    
Sbjct: 75  PML-REDYGDVIREAREKRGLSIEELAKKLKMKASTLQKFERYELEPNEREIKI 127


>gi|242373319|ref|ZP_04818893.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349029|gb|EES40631.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 179

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +    NLT   LA +  L     ++ +          PS E+   IL     
Sbjct: 2  DIGSKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHA-----SPSMETFLSILEVLGT 56

Query: 68 TICQLL 73
          +     
Sbjct: 57 SASDFF 62


>gi|223983457|ref|ZP_03633643.1| hypothetical protein HOLDEFILI_00923 [Holdemania filiformis DSM
          12042]
 gi|223964629|gb|EEF68955.1| hypothetical protein HOLDEFILI_00923 [Holdemania filiformis DSM
          12042]
          Length = 79

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + ID +  +   T   LA+ +G+   +F   KR      +++ +  +  KIL A + + 
Sbjct: 8  LKRIDELRAQRGWTYYELAKVSGVSKNTFYNYKRE----PDKYLTLHTCCKILGAFDMSF 63

Query: 70 CQLLD 74
           Q  D
Sbjct: 64 SQFFD 68


>gi|206559307|ref|YP_002230068.1| putative DNA binding protein [Burkholderia cenocepacia J2315]
 gi|198035345|emb|CAR51220.1| putative DNA binding protein [Burkholderia cenocepacia J2315]
          Length = 229

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 6/171 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + KI AA   +
Sbjct: 35  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+   ++      S         P                  
Sbjct: 90  VAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPA-AAEFHELRIAPLHTEP 148

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           G              + ++         L+      V   D+       GD
Sbjct: 149 GARRAPGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199


>gi|113971535|ref|YP_735328.1| XRE family transcriptional regulator [Shewanella sp. MR-4]
 gi|113886219|gb|ABI40271.1| transcriptional regulator, XRE family [Shewanella sp. MR-4]
          Length = 78

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + ++     L+   LAR++G+D T  +  +R       R  + +S+  ++ A   T  + 
Sbjct: 11 LRQLRNEAGLSQEQLARQSGIDRTYISGVER-----SIRNITLDSLEGLIGALGVTSEEF 65

Query: 73 LDLPFSDGRTTEK 85
          +     +      
Sbjct: 66 IRRLHDELIKHRP 78


>gi|62290714|ref|YP_222507.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1
          str. 9-941]
 gi|189024928|ref|YP_001935696.1| Cro/CI family transcriptional regulator [Brucella abortus S19]
 gi|225853293|ref|YP_002733526.1| hypothetical protein BMEA_A1902 [Brucella melitensis ATCC 23457]
 gi|254690004|ref|ZP_05153258.1| hypothetical protein Babob68_07506 [Brucella abortus bv. 6 str.
          870]
 gi|254694495|ref|ZP_05156323.1| hypothetical protein Babob3T_07514 [Brucella abortus bv. 3 str.
          Tulya]
 gi|254698155|ref|ZP_05159983.1| hypothetical protein Babob28_10710 [Brucella abortus bv. 2 str.
          86/8/59]
 gi|254700494|ref|ZP_05162322.1| hypothetical protein Bsuib55_06531 [Brucella suis bv. 5 str. 513]
 gi|254708298|ref|ZP_05170126.1| hypothetical protein BpinM_15413 [Brucella pinnipedialis
          M163/99/10]
 gi|254708850|ref|ZP_05170661.1| hypothetical protein BpinB_01038 [Brucella pinnipedialis B2/94]
 gi|254714691|ref|ZP_05176502.1| hypothetical protein BcetM6_15404 [Brucella ceti M644/93/1]
 gi|254717589|ref|ZP_05179400.1| hypothetical protein BcetM_14533 [Brucella ceti M13/05/1]
 gi|254731038|ref|ZP_05189616.1| hypothetical protein Babob42_07546 [Brucella abortus bv. 4 str.
          292]
 gi|256030376|ref|ZP_05443990.1| hypothetical protein BpinM2_06958 [Brucella pinnipedialis
          M292/94/1]
 gi|256045452|ref|ZP_05448343.1| hypothetical protein Bmelb1R_13219 [Brucella melitensis bv. 1
          str. Rev.1]
 gi|256061874|ref|ZP_05452007.1| hypothetical protein Bneo5_16155 [Brucella neotomae 5K33]
 gi|256160551|ref|ZP_05458237.1| hypothetical protein BcetM4_16231 [Brucella ceti M490/95/1]
 gi|256255754|ref|ZP_05461290.1| hypothetical protein BcetB_16060 [Brucella ceti B1/94]
 gi|256258259|ref|ZP_05463795.1| hypothetical protein Babob9C_13113 [Brucella abortus bv. 9 str.
          C68]
 gi|256263214|ref|ZP_05465746.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|260547047|ref|ZP_05822785.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260755540|ref|ZP_05867888.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260758763|ref|ZP_05871111.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260762597|ref|ZP_05874934.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
          86/8/59]
 gi|261214811|ref|ZP_05929092.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3
          str. Tulya]
 gi|261757497|ref|ZP_06001206.1| transcriptional regulator [Brucella sp. F5/99]
 gi|297249109|ref|ZP_06932817.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str.
          B3196]
 gi|62196846|gb|AAX75146.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1
          str. 9-941]
 gi|189020500|gb|ACD73222.1| transcriptional regulator, Cro/CI family [Brucella abortus S19]
 gi|225641658|gb|ACO01572.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260095412|gb|EEW79290.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260669081|gb|EEX56021.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673023|gb|EEX59844.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260675648|gb|EEX62469.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260916418|gb|EEX83279.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3
          str. Tulya]
 gi|261737481|gb|EEY25477.1| transcriptional regulator [Brucella sp. F5/99]
 gi|263093166|gb|EEZ17272.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|297174242|gb|EFH33599.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str.
          B3196]
          Length = 650

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   + R+ +R  LT  GLA  + +   + +  +          P  E+++ +  A   
Sbjct: 6  EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGN-----PRLETLWSLANALGI 60

Query: 68 TICQ 71
             +
Sbjct: 61 EFGE 64


>gi|58336583|ref|YP_193168.1| transcriptional regulator [Lactobacillus acidophilus NCFM]
 gi|227903134|ref|ZP_04020939.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC
           4796]
 gi|58253900|gb|AAV42137.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM]
 gi|227869120|gb|EEJ76541.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC
           4796]
          Length = 321

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 55/217 (25%), Gaps = 21/217 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I ++ ++ +L+   LA K  +   + +K +          P  E I  +      
Sbjct: 2   KLGQKITQLRKKSHLSQEALAEKMNVSRQAVSKWESNQSI-----PDIEKIVDLSELFGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T   LL           K  +E  +   P                            S  
Sbjct: 57  TTDYLLKNGTPSFELPGKTTEEKQIKKLPSIDDQQITQYLEVAKKTAHFE-------SLS 109

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
             ++ +        T  T   P +       +   I +      +       ++     S
Sbjct: 110 IALFFLAIGVFCLFTSFTFFSPNFTGT----IQYTIPIIIIAIAVGYFIHAKLIIHEFES 165

Query: 188 RRGRSIDLMSL-----NCCYPVDTVEMSDIEWIARIL 219
                  L S      N  +     + +    I  +L
Sbjct: 166 ITQNKFTLTSAQDDFINSSFHEFRKKNNQRIVIGVVL 202


>gi|107023625|ref|YP_621952.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690710|ref|YP_836333.1| XRE family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734053|ref|YP_001766000.1| XRE family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105893814|gb|ABF76979.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU
           1054]
 gi|116648799|gb|ABK09440.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
           HI2424]
 gi|169817295|gb|ACA91878.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
           MC0-3]
          Length = 228

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 6/171 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + KI AA   +
Sbjct: 35  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+   ++      S         P                  
Sbjct: 90  VAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPA-AAEFHELRIAPLHTEP 148

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           G              + ++         L+      V   D+       GD
Sbjct: 149 GARRAPGTTVNLVVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGD 199


>gi|319651076|ref|ZP_08005210.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2]
 gi|317397246|gb|EFV77950.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2]
          Length = 117

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   S+  K +   I  + ++  LT   LA  +GL  +     +R       R  + +++
Sbjct: 1   MNEMSNILKLVGSNIRELRKQKKLTQEELAELSGLQYSFLAGVERGE-----RNITLQTL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            KI+    ET  +L D    D     K+E  I ++                   +   T 
Sbjct: 56  EKIIVGLKETPSRLFDFSKLDDNNFSKQEVLISIVNILEKHEDKEVKLFYRMIKDITETY 115


>gi|284034602|ref|YP_003384533.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283813895|gb|ADB35734.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 807

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S       +  +     LT   LA ++GL P +    +     GR ++P   ++ +
Sbjct: 1  MVPVSTPPFAHLLRHLRTTAGLTQERLAERSGLSPQAIGALE----GGRRQYPRPTTVAQ 56

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +  A + +      L  +  R              PP
Sbjct: 57 LADALSLSPEDRHRLTTAAHRPKAGDPASAVPRQLPP 93


>gi|262402957|ref|ZP_06079517.1| error-prone repair protein UmuD [Vibrio sp. RC586]
 gi|262350456|gb|EEY99589.1| error-prone repair protein UmuD [Vibrio sp. RC586]
          Length = 135

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                  +    +     K    SM  +    GD+LI++  ++    D ++     G+ V
Sbjct: 26  SIDLDGLLIQHPSATFIGKASGDSMQGVGIFDGDLLIVDRHLEAMNHDVIVANFN-GEFV 84

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE 208
            K+L  RR     L+S N       + 
Sbjct: 85  CKILDIRRR---LLLSANEKMQPVAIN 108


>gi|302529249|ref|ZP_07281591.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4]
 gi|302438144|gb|EFL09960.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4]
          Length = 79

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 5/60 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + ++  I  +     ++   LA   G+   +    +R         PS     +I     
Sbjct: 3  ENVYNRIAVLRAERGISRRQLADALGVHYQTIGYLERGEY-----SPSLYLALRIAEFFE 57


>gi|242372633|ref|ZP_04818207.1| signal peptidase I [Staphylococcus epidermidis M23864:W1]
 gi|242349688|gb|EES41289.1| signal peptidase I [Staphylococcus epidermidis M23864:W1]
          Length = 191

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                SM P +   D ++++   +    +N GD ++      D   K LI + G +++
Sbjct: 31  TVSGESMHPTFEDRDKVMVSRISKTLNHINSGDVVIFHATKKDDYIKRLIGKPGDTVE 88


>gi|229018822|ref|ZP_04175669.1| Helix-turn-helix domain protein [Bacillus cereus AH1273]
 gi|229025063|ref|ZP_04181491.1| Helix-turn-helix domain protein [Bacillus cereus AH1272]
 gi|228736269|gb|EEL86836.1| Helix-turn-helix domain protein [Bacillus cereus AH1272]
 gi|228742443|gb|EEL92596.1| Helix-turn-helix domain protein [Bacillus cereus AH1273]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14  THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              ++   L    ++      +   +           G   S     G     +      
Sbjct: 69  FEVSL-DYLLKETAEQSNENVEGYYVSQEMAEGYIVYGQKISKYIALGFSLLILSTIPYL 127

Query: 125 SPHNGIYAIQTQDTRHKTQD 144
                               
Sbjct: 128 LFKENATMSTFLVIIIAVLG 147


>gi|229174292|ref|ZP_04301825.1| Helix-turn-helix domain protein [Bacillus cereus MM3]
 gi|228609149|gb|EEK66438.1| Helix-turn-helix domain protein [Bacillus cereus MM3]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14  THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              ++   L    ++      +   +           G   S     G     +      
Sbjct: 69  FEVSL-DYLLKETAEQSNENVEGYYVSQEMAEGYIVYGQKISKYIALGFSLLILSTIPYL 127

Query: 125 SPHNGIYAIQTQDTRHKTQD 144
                               
Sbjct: 128 LFKENATMSTFLVIIIAVLG 147


>gi|227329661|ref|ZP_03833685.1| putative DNA-binding protein [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
          Length = 188

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+    ++I   +  + +    + +  A + G+      + +R         P+  +++K
Sbjct: 1  MSDELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGES-----SPTVATLWK 55

Query: 61 IL 62
          I 
Sbjct: 56 IA 57


>gi|223043379|ref|ZP_03613425.1| signal peptidase I [Staphylococcus capitis SK14]
 gi|222443168|gb|EEE49267.1| signal peptidase I [Staphylococcus capitis SK14]
          Length = 191

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                SM P +   D ++++   +    +N GD ++      D   K LI + G +++
Sbjct: 31  TVSGESMHPTFEDRDKVMVSRISKTLNHINSGDVVIFHATKKDDYIKRLIGKPGDTVE 88


>gi|146339002|ref|YP_001204050.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146191808|emb|CAL75813.1| putative transcriptional regulator, XRE family [Bradyrhizobium sp.
           ORS278]
          Length = 481

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M   S KK  +     R+ ++  L+ + LA   G+ P+  N  +R       R  S + +
Sbjct: 1   MPGESGKKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQ-----RPVSAQIL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            ++    +  +  L             +    PL           
Sbjct: 56  LRLAEVYDLDLRDLATADEDRFFAELNEIFSDPLFRQIELPKQEL 100


>gi|78043854|ref|YP_360727.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995969|gb|ABB14868.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 107

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ E   ++   LA K  +   + +K +        R P    + KI      +I  L
Sbjct: 7   IKKLREERKMSRKELADKLQISYWALSKYENNE-----RTPDITLLRKIAQEFGVSIEYL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
             L   +   +     +  L   P + +         
Sbjct: 62  AGLSDENLLPSTSPVIQKILQLPPEALNEIDLFVDFL 98


>gi|47564376|ref|ZP_00235421.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|47558528|gb|EAL16851.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
          Length = 69

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 9/77 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    H KI             T   LA + G+   +    ++         PS    FK
Sbjct: 1  MLLLLHNKIV----VCRAEKGWTQEELATRVGVSRQTIATLEKNKYN-----PSLILAFK 51

Query: 61 ILAATNETICQLLDLPF 77
          I     +++  + D   
Sbjct: 52 IANVFEKSLTDVFDYLE 68


>gi|323438808|gb|EGA96546.1| hypothetical protein SAO11_2327 [Staphylococcus aureus O11]
 gi|323442595|gb|EGB00223.1| hypothetical protein SAO46_1515 [Staphylococcus aureus O46]
          Length = 63

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            +  R  L  + LA+ AG+   + +  +R         PS  +  KI    NET+  + 
Sbjct: 2  KELRARDGLNQTQLAKLAGVSRQTISLIERNNF-----MPSVLTAIKIARIFNETVETIF 56

Query: 74 DLPF 77
           +  
Sbjct: 57 IIEE 60


>gi|320536871|ref|ZP_08036865.1| helix-turn-helix protein [Treponema phagedenis F0421]
 gi|320146287|gb|EFW37909.1| helix-turn-helix protein [Treponema phagedenis F0421]
          Length = 125

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I E   R+     L  + LA++   +P+  +  +R       R PS   I  ++   N
Sbjct: 2  ETIGERFKRLRLNLGLNQAELAKRIQANPSLISDIERGE-----REPSKNIIVSLVEIFN 56

Query: 67 ETICQ 71
               
Sbjct: 57 LNANW 61


>gi|309388333|gb|ADO76213.1| transcriptional regulator, XRE family [Halanaerobium praevalens
          DSM 2228]
          Length = 375

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             ++ +  +  +HNL+   LA + G   T+ +  ++       R PS ++I +I    N
Sbjct: 2  DNFYKRLKNIRNQHNLSQKKLAEELGYARTTISNYEQNI-----RIPSLQTITEIADYFN 56

Query: 67 ET 68
           +
Sbjct: 57 VS 58


>gi|228934904|ref|ZP_04097735.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824804|gb|EEM70605.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14  THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              ++   L    ++          +         + G   S     G     +      
Sbjct: 69  FEVSL-DYLLKETAEQSNESVDGYYVSQEMAEGYVAYGQKISKYIALGFSLLILSTIPYL 127

Query: 125 SPHNGIYAIQTQDTRHKTQD 144
                               
Sbjct: 128 LFKENATMSTFLVIIVAVLG 147


>gi|229092601|ref|ZP_04223752.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42]
 gi|228690754|gb|EEL44530.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14  THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              ++   L    ++          +         + G   S     G     +      
Sbjct: 69  FEVSL-DYLLKETAEQSNESVDGYYVSQEMAEGYVAYGQKISKYIALGFSLLILSTIPYL 127

Query: 125 SPHNGIYAIQTQDTRHKTQD 144
                               
Sbjct: 128 LFKENATMSTFLVIIVAVLG 147


>gi|167722561|ref|ZP_02405797.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          DM98]
 gi|167741540|ref|ZP_02414314.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          14]
 gi|167818734|ref|ZP_02450414.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          91]
 gi|167827109|ref|ZP_02458580.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 9]
 gi|167848607|ref|ZP_02474115.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          B7210]
 gi|167897180|ref|ZP_02484582.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          7894]
 gi|167905553|ref|ZP_02492758.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          NCTC 13177]
          Length = 170

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
          ++ L+   LA++AG+   + +  ++  +      PS  S+ K+L     ++ +       
Sbjct: 2  KYGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPMSLAEFFTFEID 56

Query: 79 DGRTTEKKEKEIPLL 93
          + R+   +  E+P L
Sbjct: 57 ENRSVVSRRGEMPNL 71


>gi|307710976|ref|ZP_07647399.1| helix-turn-helix family protein [Streptococcus mitis SK321]
 gi|307617216|gb|EFN96393.1| helix-turn-helix family protein [Streptococcus mitis SK321]
          Length = 68

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 16/41 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          ++   +  +  R  L  + LA+ A +   + +  +R     
Sbjct: 2  QLKNRLKELRARDGLNQTELAKLAEVSRQTISLLERDEYTP 42


>gi|300787181|ref|YP_003767472.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299796695|gb|ADJ47070.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 201

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          + I  ++ R   R  L+ + +AR+AGL  ++ ++ +          PS E+++ +
Sbjct: 25 EIIAASLRRERTRAGLSLTEVARRAGLAKSTLSQLESGTGN-----PSVETLWAL 74


>gi|257869675|ref|ZP_05649328.1| signal peptidase I [Enterococcus gallinarum EG2]
 gi|257803839|gb|EEV32661.1| signal peptidase I [Enterococcus gallinarum EG2]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                 SM    R+GD++++     +   D ++ +   G    K +I   G SI 
Sbjct: 36  VPVGGNSMEGTLRQGDMVLIEKISPIKRFDVVVFQMPDGSTYIKRVIGLPGESIR 90


>gi|256848082|ref|ZP_05553526.1| predicted protein [Lactobacillus coleohominis 101-4-CHN]
 gi|256715142|gb|EEU30119.1| predicted protein [Lactobacillus coleohominis 101-4-CHN]
          Length = 273

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 8/132 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++KK    I  + +   LT   +A    +   + ++ +        R P  E+  K+ 
Sbjct: 1   MNTNKKPRNRIAELRKEKGLTLQQVADAVSVGNNTISRYETG-----KREPKLETWMKLA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              +  +  ++    +D     ++ + +                    +  ++ TV   +
Sbjct: 56  NVFDVPVSYIM---GTDNINAIRETRILHNTSLGSLAEMTGISEKRLKSIEQFETVPTVQ 112

Query: 123 IRSPHNGIYAIQ 134
                  +  + 
Sbjct: 113 EWFLIAEVLCVP 124


>gi|239832573|ref|ZP_04680902.1| XRE family transcriptional regulator [Ochrobactrum intermedium
          LMG 3301]
 gi|239824840|gb|EEQ96408.1| XRE family transcriptional regulator [Ochrobactrum intermedium
          LMG 3301]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|323340979|ref|ZP_08081228.1| UDP-glucose 6-dehydrogenase [Lactobacillus ruminis ATCC 25644]
 gi|323091641|gb|EFZ34264.1| UDP-glucose 6-dehydrogenase [Lactobacillus ruminis ATCC 25644]
          Length = 493

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 47/165 (28%), Gaps = 11/165 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S   + + +    +  N+T   L+ K G++    ++ ++   +     P  E++ +
Sbjct: 1   MKKLSQSLLADIVSTKRKAKNMTQQELSDKVGINRALLSRLEQQ--DFMPSIPQLENLAE 58

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L      +    ++      +                 +     + V         V +
Sbjct: 59  VLDFEPSDLFINSEINKMKSPSPLNIAVAGTGYVGLSIATLLAQHNHVTAVDIIPEKVDL 118

Query: 121 ------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
                 P          A +  D        S    Y+  D +++
Sbjct: 119 INNRKSPIQDDYIEKYLAEKDLDLTATLDGAS---AYKDADFVVI 160


>gi|261344094|ref|ZP_05971738.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
 gi|282567684|gb|EFB73219.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
          Length = 91

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +  ++  +   L +  G+     ++ +R            ES+ K   A N +
Sbjct: 12 IGQRIKSLRLQNGWSGDALGKVTGISQQQISRYERGVNR-----IDVESLAKFANAFNVS 66


>gi|153008774|ref|YP_001369989.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151560662|gb|ABS14160.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
          49188]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|152982646|ref|YP_001354227.1| hypothetical protein mma_2537 [Janthinobacterium sp. Marseille]
 gi|151282723|gb|ABR91133.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 109

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  A+ ++ E    +   LA KA L+ +   + +R         PS  ++ K+ +A  
Sbjct: 28 LGLAVRQLREAQGWSQEALAEKAQLNRSYVGEVERGKTI-----PSLITLDKLASALG 80


>gi|152970219|ref|YP_001335328.1| DNA-binding transcriptional regulator HipB [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|238894707|ref|YP_002919441.1| DNA-binding transcriptional regulator HipB [Klebsiella pneumoniae
          NTUH-K2044]
 gi|262044303|ref|ZP_06017369.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|330006263|ref|ZP_08305568.1| HTH-type transcriptional regulator HipB [Klebsiella sp. MS 92-3]
 gi|150955068|gb|ABR77098.1| persistence to inhibition of murein or DNA biosynthesis;
          regulatory protein [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|238547023|dbj|BAH63374.1| murein or DNA biosynthesis regulatory protein [Klebsiella
          pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259038362|gb|EEW39567.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|328535914|gb|EGF62339.1| HTH-type transcriptional regulator HipB [Klebsiella sp. MS 92-3]
          Length = 95

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  + ++++ T   LAR+ G+   + +  +           +  ++FKIL +   
Sbjct: 18 QLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENH-----PDKTTLTTLFKILQSLGV 72

Query: 68 TICQLLDLPFSDGRTTEK 85
           +        +       
Sbjct: 73 VMTLNAKAAETAPAPDNN 90


>gi|145294487|ref|YP_001137308.1| hypothetical protein cgR_0442 [Corynebacterium glutamicum R]
 gi|140844407|dbj|BAF53406.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 474

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 43/173 (24%), Gaps = 13/173 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++    +L+ + LA   GL  +  N+ +        R  +   + +I  A    
Sbjct: 6   VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDV-----RPLTVPVLLRITEAFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S      +       +           +            V + +      
Sbjct: 61  ATFFSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARAMVEMHQRYRNVR 120

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
              +I   +   +T          +   +      +V   D +  +    D +
Sbjct: 121 DKLSIAVDN---RTNTPEERRPIAEAVSM---PHEEVR--DFIYARQNYFDAL 165


>gi|77163558|ref|YP_342084.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC
          19707]
 gi|254436424|ref|ZP_05049929.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27]
 gi|76881872|gb|ABA56554.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC
          19707]
 gi|207087958|gb|EDZ65232.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27]
          Length = 76

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  +     LT + LA++A +D +  +K +R   E      +  ++ KI  A + +
Sbjct: 3  VGKNIKGLRIAAGLTQTQLAKEARIDQSGLSKIEREENE----SVTLPTLRKIAKALDCS 58


>gi|333025545|ref|ZP_08453609.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
 gi|332745397|gb|EGJ75838.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
          Length = 209

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +  +      +   LAR+A L  ++ ++ +      R    S  ++ + L  + + 
Sbjct: 12  VRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQR--RLALDSLVTLARALDTSLDQ 69

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           + +            +    ++        G          P  +
Sbjct: 70  LVETASDDVVTNPMIDGARGQMRWPVKADPGLTVVRQRMTEPPPD 114


>gi|326774788|ref|ZP_08234053.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|326655121|gb|EGE39967.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 496

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + E +  + ER   T + LAR+ G+  ++ ++            P  E + ++  A 
Sbjct: 13 LAERLSALRERSGRTYASLARRIGVSGSTLHRYCTGRTVPAEFAP-VERLARLCGAP 68


>gi|291559127|emb|CBL37927.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SSC/2]
          Length = 278

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +  +  + I ++     ++   LA K  +   + ++ +          P+T+++  
Sbjct: 18 MTEVTTMETKKIILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTV-----PNTDTLRL 72

Query: 61 ILAATNETICQ 71
          +    + +I  
Sbjct: 73 LSKEFDVSINM 83


>gi|293365764|ref|ZP_06612471.1| xre family transcriptional regulator [Streptococcus oralis ATCC
          35037]
 gi|291315767|gb|EFE56213.1| xre family transcriptional regulator [Streptococcus oralis ATCC
          35037]
          Length = 71

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K+    I  + ++  L+   LA + G+   + +  +    +      S E+   +    
Sbjct: 2  RKQTQNRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQ-----ISLENAKNVAEYF 56

Query: 66 N 66
           
Sbjct: 57 G 57


>gi|215429297|ref|ZP_03427216.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289752506|ref|ZP_06511884.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289693093|gb|EFD60522.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
          Length = 140

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E  +++   LA ++G+     ++ +R       R PS + + +I  A   
Sbjct: 21  DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLSQIAKALRV 75

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +   L         +   + ++  +    
Sbjct: 76  SAEVLYVRAGILEPSETSQVRDAIITDTA 104


>gi|196041265|ref|ZP_03108560.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196027973|gb|EDX66585.1| DNA-binding protein [Bacillus cereus NVH0597-99]
          Length = 149

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 37/110 (33%), Gaps = 5/110 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + ++ E    +   +A+K G+   +  K +         +P  +++  +    N T
Sbjct: 3   LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNVT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           + +L+    +        E++         G    F   +      +  +
Sbjct: 58  LDELIKGNQNIKEKIHINEEDEDFEKENEFGFYIGFGLLIMSAFIDYEGI 107


>gi|167830092|ref|ZP_02461563.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 9]
          Length = 118

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT FS+     A+    +R  L+ + LA++ G+      K +R         PS E I +
Sbjct: 1  MTPFSN-----ALVNYRKRAGLSQTNLAKQLGVAIHYVWKLERGVKPP----PSVEQIER 51

Query: 61 ILAATNETICQ 71
          I AA +     
Sbjct: 52 IAAALDMGEAD 62


>gi|167765761|ref|ZP_02437814.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1]
 gi|167712478|gb|EDS23057.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1]
          Length = 264

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +  +  + I ++     ++   LA K  +   + ++ +          P+T+++  
Sbjct: 4  MTEVTTMETKKIILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTV-----PNTDTLRL 58

Query: 61 ILAATNETICQ 71
          +    + +I  
Sbjct: 59 LSKEFDVSINM 69


>gi|161620977|ref|YP_001594863.1| hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365]
 gi|254703244|ref|ZP_05165072.1| hypothetical protein Bsuib36_04804 [Brucella suis bv. 3 str. 686]
 gi|260567822|ref|ZP_05838291.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4
          str. 40]
 gi|261753875|ref|ZP_05997584.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|161337788|gb|ABX64092.1| Hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365]
 gi|260154487|gb|EEW89568.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4
          str. 40]
 gi|261743628|gb|EEY31554.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMVEFF 64


>gi|254831247|ref|ZP_05235902.1| hypothetical protein Lmon1_07812 [Listeria monocytogenes 10403S]
          Length = 158

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + +  + ++   +   LA + G         ++       R P  +++ KI    N +
Sbjct: 4  KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGT-----REPDYQTLLKIAEFFNVS 56


>gi|154485008|ref|ZP_02027456.1| hypothetical protein EUBVEN_02726 [Eubacterium ventriosum ATCC
           27560]
 gi|149733961|gb|EDM50080.1| hypothetical protein EUBVEN_02726 [Eubacterium ventriosum ATCC
           27560]
          Length = 424

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S+K   E I  +     ++ S LAR+  + P+   +          +  S++ + K+ 
Sbjct: 13  MDSNKTPSEIIAELCVEAGISKSELARRLEITPSQITRILNGDT----KTISSDILIKLT 68

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                +   LL +        EK    +P+L    +   G     +    + 
Sbjct: 69  KLFGVSADYLLGITDKKEIIKEKHTTRVPMLLMSSAFPLGRCIEFIESIDDV 120


>gi|126736840|ref|ZP_01752575.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6]
 gi|126721425|gb|EBA18128.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6]
          Length = 165

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I ++      +   LA  AG+   +  + +R          S E++  I +       +L
Sbjct: 6  IRKLRLEKGYSQEQLAEMAGISTRTLQRIERGANA------SPETLKCIASVLEIDFSEL 59

Query: 73 LDLPFSDGRTT 83
             P     T 
Sbjct: 60 RKEPDMTSDTP 70


>gi|110800489|ref|YP_695467.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110675136|gb|ABG84123.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
          Length = 180

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + ++ ++  LT   LA   G+  +  +  +         + + E++   L    ++
Sbjct: 3  IGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYN--PSFDTIEALATSLKLDLKS 60

Query: 69 ICQLLDLPFSDGRTT 83
                L        
Sbjct: 61 FFDDTLLEEDYYLKP 75


>gi|19705233|ref|NP_602728.1| MerR family transcriptional regulator [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296329087|ref|ZP_06871592.1| MerR family transcriptional regulator [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|19713186|gb|AAL94027.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296153806|gb|EFG94619.1| MerR family transcriptional regulator [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 184

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 36/191 (18%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + +      ++   LA K  L  +  ++ ++         PS E++ KI    +  
Sbjct: 3   IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L++    D R  E  +KE                      G          I   +N
Sbjct: 58  VAYLIEDEEDDIRNIEYIKKENIRY--------IESLDSNIKMG----------ILLSNN 99

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186
               ++           S    Y  G              + + I     ++    K   
Sbjct: 100 REKNMEPIIYEIGVDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148

Query: 187 SRRGRSIDLMS 197
             +G S+   S
Sbjct: 149 LSKGDSLYFKS 159


>gi|317485947|ref|ZP_07944803.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316922797|gb|EFV44027.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 87

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +    E   +T   LAR AG      ++ +R       R P   ++  +  A     
Sbjct: 11 GKILVTAREERGITQYRLARLAGRSIQQISQIERGE-----REPKLSALILLAHALGMEP 65


>gi|306843020|ref|ZP_07475647.1| Cro/CI family transcriptional regulator [Brucella sp. BO2]
 gi|306286812|gb|EFM58353.1| Cro/CI family transcriptional regulator [Brucella sp. BO2]
          Length = 470

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 4  FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S +KI+    I R+    +LT + +A   G+ P+  N  +R       R  + + + K+
Sbjct: 1  MSERKIFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55

Query: 62 L 62
           
Sbjct: 56 A 56


>gi|297528604|ref|YP_003669879.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297251856|gb|ADI25302.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3]
          Length = 148

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 9/117 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  + +   LT   L RK  +   S +  +        R P  +++  +  A + +I 
Sbjct: 5   QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGN-----RTPDMDTLKALADALDVSID 59

Query: 71  Q----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                    P         ++ E  +         G      F      +   + E 
Sbjct: 60  YLLGRDNTQPTDTKLPALTEKDERDIQKELEKIIKGLKTGSGFAAFGGVDIDELDEE 116


>gi|282850841|ref|ZP_06260215.1| signal peptidase I [Lactobacillus gasseri 224-1]
 gi|311110905|ref|ZP_07712302.1| signal peptidase I [Lactobacillus gasseri MV-22]
 gi|282557793|gb|EFB63381.1| signal peptidase I [Lactobacillus gasseri 224-1]
 gi|311066059|gb|EFQ46399.1| signal peptidase I [Lactobacillus gasseri MV-22]
          Length = 213

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186
            + +             SM P +   D +I     ++  GD +++      G +  K +I
Sbjct: 28  FFVLNKFVFANLTVSGISMQPTFENNDRVIALRHAKIKQGDIVIVDAPDEPGALYIKRVI 87

Query: 187 SRRGRSID 194
              G ++ 
Sbjct: 88  GLPGDTVV 95


>gi|227485462|ref|ZP_03915778.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227236592|gb|EEI86607.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 131

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          +  + E   LT   LA K  +   + ++ +    + R R 
Sbjct: 7  LKSLREEKKLTQGELAEKVNVSLKTISRYELGISKPRYRK 46


>gi|217967072|ref|YP_002352578.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM
          6724]
 gi|217336171|gb|ACK41964.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM
          6724]
          Length = 105

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + I  + ++HN+    LA K GL  +  +  +R       + PS +++ +I  A N
Sbjct: 2  NVGKRIREIRKKHNMKLEDLAEKTGLSLSYISLIERG-----LKNPSLKALERIAQALN 55


>gi|254412503|ref|ZP_05026277.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196180813|gb|EDX75803.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 161

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 9   IWEA--IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           +W A  I  +     LT +  A+K G+   + ++ +    E         S+ 
Sbjct: 97  LWNAQLIKALRRYMGLTQAEFAQKLGVRQATVSQWENSAYEPTLATSKYLSLI 149


>gi|114569372|ref|YP_756052.1| XRE family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339834|gb|ABI65114.1| transcriptional regulator, XRE family [Maricaulis maris MCS10]
          Length = 70

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          +   +  M  RH LT + LA   G+   S N  +        
Sbjct: 6  LGNRLKEMRARHGLTQAQLAEAVGVTRKSINTVENRVFTPST 47


>gi|326335649|ref|ZP_08201836.1| HTH_3 family transcriptional regulator protein [Capnocytophaga
          sp. oral taxon 338 str. F0234]
 gi|325692415|gb|EGD34367.1| HTH_3 family transcriptional regulator protein [Capnocytophaga
          sp. oral taxon 338 str. F0234]
          Length = 141

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           F+ +     + R+ E + L+ S LA   G+  +S +       +     PS + + +I+
Sbjct: 1  MFNQQDFIARLQRLMEYNELSASALADHLGVPRSSISHLLSERNK-----PSLDFVLRII 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEK 88
              E     L     +    EKKEK
Sbjct: 56 DKYPEVDLYWLLYGDGNFPKEEKKEK 81


>gi|323486126|ref|ZP_08091457.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum
          WAL-14163]
 gi|323692982|ref|ZP_08107203.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
 gi|323400693|gb|EGA93060.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum
          WAL-14163]
 gi|323502983|gb|EGB18824.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
          Length = 69

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 5/47 (10%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 6  HKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          H+ I +  +        ++   LA   G+   + +  +        +
Sbjct: 3  HELILKNRLKTARAEQGISQGELAAMVGVSRQTISYIETGQFNPTAK 49


>gi|315612296|ref|ZP_07887210.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
           ATCC 49296]
 gi|315315689|gb|EFU63727.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
           ATCC 49296]
          Length = 167

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +  + +    +   LA +  +   S +K +   +      P  E I ++      
Sbjct: 2   KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           T   LL    S+  +T    +E    Y+    S G +     
Sbjct: 57  TTDYLLLDENSEKSSTAVILEEDKDNYYKEVKSFGLWQVIYI 98


>gi|300940122|ref|ZP_07154730.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 21-1]
 gi|300455059|gb|EFK18552.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 21-1]
          Length = 94

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 19/37 (51%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          ++  A+  + +++  T S LA+K G+   + +  +  
Sbjct: 18 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 54


>gi|333025931|ref|ZP_08453995.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|332745783|gb|EGJ76224.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 107

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + +A+        L+ S LA +AG+     ++ +  G +     P    + + L     
Sbjct: 33  DLGQAVHDRRVELGLSQSELAERAGMTQPQVSRME--GGDTVPTLPLLRRLARALDGALN 90

Query: 68  TICQLLDLPFSDGRTT 83
                 D   +     
Sbjct: 91  LAIDENDSHVTFTPHA 106


>gi|296168076|ref|ZP_06850142.1| PbsX family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896883|gb|EFG76511.1| PbsX family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 142

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E   ++   LA K+G+     ++ +R       R PS E + +I  A   
Sbjct: 21  DIGGFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERG-----LRKPSAEVLNQIAKALRV 75

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +   L         + + + ++  +    
Sbjct: 76  SAEVLYVRAGILEPSDKSQVRDAIITDTA 104


>gi|260893216|ref|YP_003239313.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260865357|gb|ACX52463.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 93

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++   + R      LT   LAR+ G   ++  + +        R      + K+  A 
Sbjct: 28 RLLAELVRRRLEKGLTQEELARRIGTRQSAIARLESGRTSPTLR-----MLKKVADAL 80


>gi|254705610|ref|ZP_05167438.1| hypothetical protein BpinM_00991 [Brucella pinnipedialis
          M163/99/10]
 gi|261313020|ref|ZP_05952217.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261302046|gb|EEY05543.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|254295523|ref|YP_003061545.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
 gi|254044054|gb|ACT60848.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
          Length = 86

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 1  MTS--FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          MT    S + + +AI ++     LT + LA +  +   + +K +      R        +
Sbjct: 1  MTDIIRSPRNVGDAIRKIRLEKGLTQTELAARVNVRQATISKLESGEPATRLSTLFDVLM 60

Query: 59 F 59
           
Sbjct: 61 A 61


>gi|237733315|ref|ZP_04563796.1| predicted protein [Mollicutes bacterium D7]
 gi|229383696|gb|EEO33787.1| predicted protein [Coprobacillus sp. D7]
          Length = 138

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 2/110 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I    ++  L+   LA +  +   + +K +               + K L  T   
Sbjct: 3   LGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNI--DKIMDVAKALEITLNE 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +  L +    +    E    ++ L           +       G     +
Sbjct: 61  LLGLEEDSNDEYAKLESILNQVVLTQNNEIIRNKKYLKMGLVIGTGIFII 110


>gi|223985090|ref|ZP_03635186.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM
           12042]
 gi|223962912|gb|EEF67328.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM
           12042]
          Length = 136

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S K +   I  + +   +T + LA K  +   + +K +R         P  +S+ ++   
Sbjct: 4   SGKTMGMVIASLRKAQGMTQAELAAKMQVTDKAVSKWERDLS-----CPDIQSLPRLAEI 58

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
              ++ +L+        + ++  + + L+      + G      
Sbjct: 59  LEVSVEELMQGETRPASSVKRINEIVDLVLKALVVAMGIALVVC 102


>gi|218690782|ref|YP_002398994.1| phage regulatory protein cI [Escherichia coli ED1a]
 gi|218428346|emb|CAR09126.1| phage regulatory protein cI [Escherichia coli ED1a]
          Length = 210

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 28/214 (13%)

Query: 11  EAIDRMAERHNLT-PSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68
            AI+R+ E +  T    L+    +  ++  N+  R            + I +    T  +
Sbjct: 14  AAIERLLEAYGFTTKQALSEHLNVSKSTMANRVLRD-------SFPADWIIQCALETGVS 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRS 125
           +  L     S  +   + EK                 +   P G   N   ++   EI  
Sbjct: 67  LLWLATGQGSM-KEGYEPEKRSHNENKQAIKPLSKLITPSIPKGTLENGQLSID-EEIFL 124

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            H+ + A   +    +T               +++ +++        +    G I+   +
Sbjct: 125 DHSILPADYEESMFLETPTDCY----------LIDKSVKQVSNGF-WLINIDGMIIIAKI 173

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   G  I +   N           D+E I R +
Sbjct: 174 MRIPGNKIVV---NQDEASFECSADDVEVIGRAV 204


>gi|213158984|ref|YP_002320982.1| transcriptional regulator, XRE family [Acinetobacter baumannii
           AB0057]
 gi|215482031|ref|YP_002324213.1| Helix-turn-helix family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345648|ref|ZP_07226389.1| putative HTH-type transcriptional regulator [Acinetobacter
           baumannii AB056]
 gi|301512343|ref|ZP_07237580.1| putative HTH-type transcriptional regulator [Acinetobacter
           baumannii AB058]
 gi|301596168|ref|ZP_07241176.1| putative HTH-type transcriptional regulator [Acinetobacter
           baumannii AB059]
 gi|332851919|ref|ZP_08433805.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013150]
 gi|332868837|ref|ZP_08438430.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013113]
 gi|213058144|gb|ACJ43046.1| transcriptional regulator, XRE family [Acinetobacter baumannii
           AB0057]
 gi|213988455|gb|ACJ58754.1| Helix-turn-helix family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332729612|gb|EGJ60949.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013150]
 gi|332733090|gb|EGJ64289.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6013113]
          Length = 183

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 17/144 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +   H  +   I  + + H+L+   LA +AG+   +    +   +       S   +  I
Sbjct: 6   SVLQH--VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 58

Query: 62  LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            A        ++  P               +K+E +   L   PS S     +     G 
Sbjct: 59  AAVLGVDFRTIVSAPELKEHALVNALAWQGQKEESKATFLASVPSRSQVELWTWSLAVG- 117

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137
             + V   +       IY ++ + 
Sbjct: 118 -ESYVAEADAEGWQELIYVLEGEL 140


>gi|163845040|ref|YP_001622695.1| hypothetical protein BSUIS_B0917 [Brucella suis ATCC 23445]
 gi|163675763|gb|ABY39873.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|126731204|ref|ZP_01747012.1| transcriptional regulator, XRE family protein [Sagittula stellata
          E-37]
 gi|126708506|gb|EBA07564.1| transcriptional regulator, XRE family protein [Sagittula stellata
          E-37]
          Length = 464

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +F    I   + R+   H  T   +A++ G+  +  N  ++       R  S   + K
Sbjct: 1  MKTF----IGPRLRRLRIEHGQTQVQMAKELGISTSYVNLLEKNE-----RSVSVPVLLK 51

Query: 61 ILAATNETICQ 71
          +  A       
Sbjct: 52 LFEAYGVDWRD 62


>gi|186681969|ref|YP_001865165.1| XRE family transcriptional regulator [Nostoc punctiforme PCC
          73102]
 gi|186464421|gb|ACC80222.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC
          73102]
          Length = 83

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 6/78 (7%)

Query: 1  MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M      +I    + R       +   LA   GL  T  ++ +R       + PS   + 
Sbjct: 1  MQPSKLDQILGLELQRRRTEKGWSQEYLAEVTGLHRTYISQLERG-----LKSPSVRVLS 55

Query: 60 KILAATNETICQLLDLPF 77
           I  A   T+ + L    
Sbjct: 56 HITKALGMTMSEFLQPVE 73


>gi|325123768|gb|ADY83291.1| hypothetical protein BDGL_002705 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 209

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 17/157 (10%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T   H  +   I  + +  +L+   LA +AG+   +    +   +       S   +  I
Sbjct: 32  TVLQH--VGTNIRLLRDERDLSQQDLADQAGVSRRTIAALETGQVN-----ISLAKLDAI 84

Query: 62  LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            A        ++  P               + +E +  LL   PS S           G 
Sbjct: 85  AAVLGVDFKTIVSAPEHKEHAVVNALAWQGKDEESKATLLASVPSRSQVELWIWSLAVG- 143

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
             + V   +       IY ++ + T   T    ++P 
Sbjct: 144 -ESYVAEADADGWQEIIYVLEGELTIQFTDSKKIIPA 179


>gi|317485601|ref|ZP_07944477.1| hypothetical protein HMPREF0179_01830 [Bilophila wadsworthia 3_1_6]
 gi|316923138|gb|EFV44348.1| hypothetical protein HMPREF0179_01830 [Bilophila wadsworthia 3_1_6]
          Length = 229

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 57/218 (26%), Gaps = 27/218 (12%)

Query: 26  GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEK 85
             A + G+  +          E     P   ++  I  A   ++  LL          + 
Sbjct: 2   DFALRLGITRSRLCNYINDRSE-----PDYATLCTIAEALQVSVDYLLGRNGIQDSDFQG 56

Query: 86  KEKEIPLLY---FPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQD---TR 139
                  +     P S     +               VP         +    +      
Sbjct: 57  SRIFSDFIIGREKPASEGMTVWIPLYLSRSETLEEPPVPSGWLRETSSFVQTGEFRQPYA 116

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNC-------GDRLLIKPRTGDIV---AKVLISRR 189
               D SM P    GDI  +      +         D   ++   GD V    K    + 
Sbjct: 117 IIVGDDSMAPEIMPGDIAYIQPCFIYHPFMEQNLGRDLFGVRLDAGDAVGTSLKRCCVQS 176

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEW---IARIL--WAS 222
              +   S N  Y    ++M+ I +   I +++  W S
Sbjct: 177 N-LLIFYSNNVKYSPVILDMNKILFVPLIGKVVSIWRS 213


>gi|300214961|gb|ADJ79377.1| DNA-binding protein [Lactobacillus salivarius CECT 5713]
          Length = 203

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
           +KI + I +  +  + T + LA+K G+   + +K +      
Sbjct: 3  QEKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIP 45


>gi|296158619|ref|ZP_06841449.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295891187|gb|EFG70975.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 212

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     +T   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 34  RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  L     +          EIP L    +         +   G  +    +
Sbjct: 89  SLDSLFAPQKTPEAIAVSGPHEIPTLSGHDARYQLRVWGPIELAGK-FEWYEL 140


>gi|294794988|ref|ZP_06760123.1| toxin-antitoxin system, antitoxin component, Xre family
           [Veillonella sp. 3_1_44]
 gi|294454350|gb|EFG22724.1| toxin-antitoxin system, antitoxin component, Xre family
           [Veillonella sp. 3_1_44]
          Length = 142

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 8/122 (6%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +K I++ I     +  L+   LA K G    ++ NK +   ++      +   I K    
Sbjct: 20  NKTIYDRIRERRIQLGLSQEDLAIKMGYKSRSTINKIESGAVD-----IARNKIEKFAEV 74

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
            N T   L+D   +        E          + +               + +      
Sbjct: 75  LNTTPAYLMDWNDTPKEYYIDPEVSKYAQAVKDNPNLRILFDASKDMSK--DDIDFVVNM 132

Query: 125 SP 126
             
Sbjct: 133 IE 134


>gi|291541388|emb|CBL14498.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63]
          Length = 280

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            + +  ++ NL+   LA K G+   + +K +R         P T+++  +      ++ 
Sbjct: 7  NRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEA-----SPDTDNLILLADIYGVSLD 61

Query: 71 Q 71
          +
Sbjct: 62 E 62


>gi|238018832|ref|ZP_04599258.1| hypothetical protein VEIDISOL_00692 [Veillonella dispar ATCC 17748]
 gi|237864598|gb|EEP65888.1| hypothetical protein VEIDISOL_00692 [Veillonella dispar ATCC 17748]
          Length = 125

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 3/121 (2%)

Query: 1   MTSFSHKKIW-EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M+   +K I  E I R+ +   +  + +    GL  T+F    +       R    E + 
Sbjct: 1   MSDLGNKAIMAENIQRLMDSRGIDRNKICADLGLKYTTFTDWVKGNT--YPRIDKIELLA 58

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                    + +     +   R   +  + +              D            + 
Sbjct: 59  NYFGVPKSELVEKYTDGYYTDREAAEFAEYLRTRPGARMLFSAAKDISKEDLEKAVEYIE 118

Query: 120 V 120
           +
Sbjct: 119 L 119


>gi|256371092|ref|YP_003108916.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans
          DSM 10331]
 gi|256007676|gb|ACU53243.1| transcriptional regulator, XRE family [Acidimicrobium
          ferrooxidans DSM 10331]
          Length = 205

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I E +    E+  L+ + +A + GL     ++ +R G+      PS +S+  I  A  
Sbjct: 8  IGERLRHAREQRGLSLAAVAERTGLSKGFLSRVERDGV-----SPSIDSLVAIADAVG 60


>gi|229083904|ref|ZP_04216210.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44]
 gi|228699402|gb|EEL52081.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44]
          Length = 262

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKLNTSRQAISKWENGQG-----FPETEKLLMIGNIFEVS 57


>gi|227892275|ref|ZP_04010080.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741]
 gi|227865916|gb|EEJ73337.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741]
          Length = 211

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
           +KI + I +  +  + T + LA+K G+   + +K +      
Sbjct: 11 QEKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIP 53


>gi|218134936|ref|ZP_03463740.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990321|gb|EEC56332.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC
          43243]
          Length = 188

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S ++I +AI +      +T    A+  G    +  K +   I  +      + + +I 
Sbjct: 1  MSSPEEIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMK-----IDVLKQIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
             N    +LL    ++        +     +   S 
Sbjct: 56 NELNVPWQELLSPEDNNIPKDNTATEYPAYEFHTMSD 92


>gi|163849811|ref|YP_001637854.1| peptidase S24/S26 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163661416|gb|ABY28783.1| peptidase S24 and S26 domain protein [Methylobacterium extorquens
           PA1]
          Length = 151

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 5/111 (4%)

Query: 111 TGNKWNTVGVPEIRSPHNGIYA-IQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCG 168
            G        PE                   +    SM       GD+  ++ +++   G
Sbjct: 28  AGFPSPADDFPENALELPRWLVPNPPATFLWRIGGDSMRDAGIFDGDLACVDRSLKPGHG 87

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
             ++     G++  K ++   G    L   N   P+  + E++++     +
Sbjct: 88  SVVVAAVD-GEMSIKRMV-VEGNRAHLSFDNSDLPIYALEELAEVNVWGVV 136


>gi|148985005|ref|ZP_01818248.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922703|gb|EDK73820.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800013|emb|CBW32605.1| putative epsilon antitoxin [Streptococcus pneumoniae OXC141]
          Length = 158

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 6/134 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQHEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHK 141
           +    IQT     +
Sbjct: 117 DLSDLIQTNIYLVE 130


>gi|313898421|ref|ZP_07831958.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956803|gb|EFR38434.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 220

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
             +++ +T   LA + G+   +  K ++  I      PS E +  +      TI  L+ 
Sbjct: 8  EYRKKNMMTQEELADRLGVSRQTITKWEKGTI-----LPSLEYLIDLSRLFGVTIDHLVK 62

Query: 75 LPFSDGRTTEKKEKEIPLLYFPPS 98
                 ++ +        +   +
Sbjct: 63 DDDCICESSHQVHTTALAEFLVTA 86


>gi|306838646|ref|ZP_07471482.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
 gi|306406289|gb|EFM62532.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|300856317|ref|YP_003781301.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300436432|gb|ADK16199.1| predicted DNA binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 401

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/175 (9%), Positives = 41/175 (23%), Gaps = 14/175 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +    +    T   LA   G+   + ++ +          P  E++ KI+       
Sbjct: 19  GERLKSARKYRGKTIKDLAEDIGVSKQAISQFENGKST-----PLFETLIKIVDKLKFPR 73

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN-KWNTVGVPEIRSPH- 127
               +    + +      + +  L              +    N     +  PE+  P  
Sbjct: 74  EYFYEKDKVNIQLGNTYFRALSKLTKKEENIQKEKTKFIGKIFNFLNEYIEFPELNLPDF 133

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
                I+      +          +    L+            ++    T     
Sbjct: 134 EEDMEIEDMAMGLRDYWKLGEEPIKDMVYLL-------EKNGIIITSMNTNTDTI 181


>gi|300787324|ref|YP_003767615.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299796838|gb|ADJ47213.1| XRE family transcriptional regulator with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 740

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 4/94 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +  +     L+   LA  +G+   +  + +R       R P  E++  ++ A   T
Sbjct: 10  LAEMLAGLRSSRGLSQEQLAELSGISVRAIGEIERGAT----RRPQRETLRALIGALGLT 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
             +      +         +       P   +  
Sbjct: 66  PEEQEAFARTARTAPPPDTRRRRTAVRPALPAPV 99


>gi|297157341|gb|ADI07053.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 107

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + +A+        L+ + LA +AG+     ++ +  G +     P    + K L 
Sbjct: 33 DLGQAVYDRRIELGLSQAELAERAGMTQPQVSRME--GGDTVPTLPLLRRLAKALD 86


>gi|326315473|ref|YP_004233145.1| helix-turn-helix domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372309|gb|ADX44578.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 189

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 12/131 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE- 67
           + E + R+     L+   LA  AGL     +  +           S  S+ ++ AA    
Sbjct: 18  VSENLRRLRAEAGLSQLALAEAAGLSRRMISSLEAGDTN-----ISLASLDRLAAALGVG 72

Query: 68  ------TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                           +     + K+    LL + P+       S     G  ++    P
Sbjct: 73  FVALVSDPSARSQRVDALAWKGKSKDSRGVLLGYVPATREAQLWSWALAPGETYHGQADP 132

Query: 122 EIRSPHNGIYA 132
                   + A
Sbjct: 133 AGWHEMVFVVA 143


>gi|229182053|ref|ZP_04309349.1| transcriptional regulator, XRE [Bacillus cereus 172560W]
 gi|228601468|gb|EEK58993.1| transcriptional regulator, XRE [Bacillus cereus 172560W]
          Length = 108

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  +T   LA+   L  ++    +R       R P   ++ +I      +
Sbjct: 5  GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFKVS 58


>gi|164516364|emb|CAP48298.1| putative integron gene cassette protein [uncultured bacterium]
          Length = 101

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I E I         + + +A+  G+   + +  +R G     + P+   + KI     
Sbjct: 2  KDIGELIKARRLELGYSSATVAKHLGITAQAVSNWERQG-----KSPAKALLPKIADLLG 56

Query: 67 ETICQ 71
            + +
Sbjct: 57 IRVEE 61


>gi|148258862|ref|YP_001243447.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146411035|gb|ABQ39541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
          Length = 112

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E +    +   L+ S +A+  GL   S ++ +        R  S + + ++    + 
Sbjct: 2  QIAERLKEARKLAGLSQSHVAKMLGLHRPSISEMEAGN-----RRVSADELARLAETYDV 56

Query: 68 TICQ 71
          ++  
Sbjct: 57 SVAW 60


>gi|146297633|ref|YP_001181404.1| XRE family transcriptional regulator [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145411209|gb|ABP68213.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 122

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI + +    ++  LT   +A   G++ T  +  +        R  S  ++  +     
Sbjct: 8  KKIGQKLQEARKKAGLTQEQVADYLGVNKTLISYYENGI-----REISIATLRNLSNLYG 62

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL 92
           T+   L     +  T     +   L
Sbjct: 63 YTMSYFLSDDEINEPTISFSFRADEL 88


>gi|85711364|ref|ZP_01042423.1| putative DNA-binding protein [Idiomarina baltica OS145]
 gi|85694865|gb|EAQ32804.1| putative DNA-binding protein [Idiomarina baltica OS145]
          Length = 174

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H  +   + ++ +    + +  A   G+      + +R         P+  +++K+    
Sbjct: 5  HHTVARRLKKLRKDKGWSLTACAEHTGVSKAMLGQIERQES-----SPTLATLWKLATGF 59

Query: 66 NETICQLLDLPFSDGRTTEKKEK 88
          N ++  LL+            E+
Sbjct: 60 NVSLSWLLNDEQQPMTFDFAHER 82


>gi|328956524|ref|YP_004373910.1| putative DNA-binding protein, XRE family [Carnobacterium sp.
          17-4]
 gi|328672848|gb|AEB28894.1| putative DNA-binding protein, XRE family [Carnobacterium sp.
          17-4]
          Length = 96

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I  + + +N+T   L+ +  + P   +  +    +      S +++  I      
Sbjct: 2  EIGNRIQELRKLNNMTAKELSERINVSPPFISAIENNSTK-----LSLKTLAHICDVLGV 56

Query: 68 TICQLLD 74
          TI +  +
Sbjct: 57 TISEFFN 63


>gi|315651586|ref|ZP_07904603.1| transcriptional regulator [Eubacterium saburreum DSM 3986]
 gi|315486145|gb|EFU76510.1| transcriptional regulator [Eubacterium saburreum DSM 3986]
          Length = 75

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 13/40 (32%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
           +       +L+   LA   G+   + N  ++       R
Sbjct: 7  RLKSARAAKDLSQQQLADMVGVSRQTINAIEKGDYNPTIR 46


>gi|312126546|ref|YP_003991420.1| XRE family transcriptional regulator [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776565|gb|ADQ06051.1| transcriptional regulator, XRE family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 145

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ E    T + LA  AG++PTS  +++R   E      S  ++ +I  A    +  L
Sbjct: 15  IKKLREEKGWTINQLALYAGVNPTSIMRAERGESE-----LSLGNLLRIAKALKVDLNTL 69

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           ++      +  +++         P      
Sbjct: 70  VEESMGQIKLGDEELVPEEKDKTPDIYEII 99


>gi|312890063|ref|ZP_07749607.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311297595|gb|EFQ74720.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 135

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 1  MTS---FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          MT+    +++ I   I R+ E   +    LA + G+   + ++ ++            ES
Sbjct: 1  MTTSEKPTNQHIGRKISRIRELRGIKQEDLATQLGVSQKTVSRMEQSE---VIEDDVLES 57

Query: 58 IFKILAAT 65
          I KIL  T
Sbjct: 58 IAKILGVT 65


>gi|307727246|ref|YP_003910459.1| helix-turn-helix domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307587771|gb|ADN61168.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003]
          Length = 215

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 60/199 (30%), Gaps = 31/199 (15%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-------------- 47
            +  HK +   + +  +   LT + L+ ++G+  ++ +K++R  I               
Sbjct: 18  PALDHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 77

Query: 48  -------GRNRWPSTESIFKILAATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSG 99
                  GR R P+  ++     A  +                    ++ +P+     + 
Sbjct: 78  LEFDAIFGRRRKPAAGAMKPSFTAAGKQHVYDTPNYEYGMLANNLTGKRMMPMRAHIHAR 137

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
           +   F   +  +G          + +    +     +  R      S+   Y    +  +
Sbjct: 138 AVADFPEYIRHSGE-----EFVFLLAGELELRFENGKSFRL-MPGDSL---YFDSSVGHI 188

Query: 160 NSAIQVNCGDRLLIKPRTG 178
             ++     D L+    T 
Sbjct: 189 YLSVGDEDADALVCCVDTD 207


>gi|149370530|ref|ZP_01890219.1| hypothetical protein SCB49_13740 [unidentified eubacterium SCB49]
 gi|149356081|gb|EDM44638.1| hypothetical protein SCB49_13740 [unidentified eubacterium SCB49]
          Length = 104

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 6/72 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  +      + + LA K G+  +S    ++       R  S  S+  I  +     
Sbjct: 18 GEKLSALRVAAGWSQTELAEKTGMSRSSIAGIEKG------RNFSIASLISIARSLELLD 71

Query: 70 CQLLDLPFSDGR 81
                      
Sbjct: 72 EFDFFFKEETYE 83


>gi|323487380|ref|ZP_08092678.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163]
 gi|323693858|ref|ZP_08108049.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum
           WAL-14673]
 gi|323399286|gb|EGA91686.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163]
 gi|323502110|gb|EGB17981.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum
           WAL-14673]
          Length = 115

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 5/101 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E +    +    T   LA   G+        +    E     P T  I  I    + +
Sbjct: 3   IGERLKIARKARGYTQDSLAEALGMSRGVITNIEYGRAE-----PQTLVIKAICDILHIS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
              L+    +     + ++    L Y   +      +   +
Sbjct: 58  QTWLMTGNGNMDIDFDLEKSARLLSYIYNAAKDLTVEEQDY 98


>gi|268609129|ref|ZP_06142856.1| hypothetical protein RflaF_06476 [Ruminococcus flavefaciens FD-1]
          Length = 163

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I + +  + +    T   L  K G+   + ++ +      
Sbjct: 6  IGKFLKELRKEKGYTQETLGEKIGVTNKTVSRWETGTYIP 45


>gi|260433144|ref|ZP_05787115.1| transcriptional regulator, XRE family [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260416972|gb|EEX10231.1| transcriptional regulator, XRE family [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 129

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           + +    E   +T + LAR+ G+   +    +    E R    S 
Sbjct: 16 GDRLAGAREAAGMTQAQLARRLGVKKATVVGWENDMSEPRANKLSM 61


>gi|257877770|ref|ZP_05657423.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257811936|gb|EEV40756.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 72

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          +  I  + E  +L    LA+   +  T++++ +   ++       T+S+ K+    + ++
Sbjct: 2  YHRIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLD-----IPTQSLIKLADFYSTSV 56

Query: 70 CQLLDLPFSDGRTTEK 85
            LL+L          
Sbjct: 57 DYLLNLTDHQKPYPRN 72


>gi|229199676|ref|ZP_04326321.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293]
 gi|228583822|gb|EEK41995.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293]
          Length = 61

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I ++ ++  +T   LA K G+     +  +          PS +   KI      +
Sbjct: 4  ITKLRKQKAITQEELAVKVGITRAYLSNLENG-----KHKPSLDVALKISEVLGSS 54


>gi|167590868|ref|ZP_02383256.1| gp48 [Burkholderia ubonensis Bu]
          Length = 110

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             A+    +   LT + +A + G   ++ ++ +      +   PS  ++ K  AA  
Sbjct: 47  LRALLAARQEAGLTQAQVAERMGTTASAVSRLEASLTSEK-HSPSFATLRKYAAACG 102


>gi|217958091|ref|YP_002336635.1| hypothetical protein BCAH187_A0631 [Bacillus cereus AH187]
 gi|217068076|gb|ACJ82326.1| conserved domain protein [Bacillus cereus AH187]
          Length = 73

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I ++ ++  +T   LA K G+     +  +          PS +   KI      +
Sbjct: 4  ITKLRKQKAITQEELAVKVGITRAYLSNLENG-----KHKPSLDVALKISEVLGSS 54


>gi|147919967|ref|YP_686279.1| hypothetical protein RCIX1743 [uncultured methanogenic archaeon
           RC-I]
 gi|110621675|emb|CAJ36953.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 185

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 10/112 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E+I +   +  LT + LA KA +      + +   ++     P   ++  IL A +E   
Sbjct: 7   ESIKKRRIKLGLTQASLAEKANVSQPLIARIESGDVD-----PRLSTLRSILTALDEMER 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF-----DSGVFPTGNKWNT 117
             +                  +           F       G  P G+    
Sbjct: 62  CKVTAKDLMTSPVIAVTSSDTVDNAVKLMEKHGFSQLPVIDGGVPVGSISEN 113


>gi|29566890|ref|NP_818455.1| gp155 [Mycobacterium phage Omega]
 gi|29425615|gb|AAN12797.1| gp155 [Mycobacterium phage Omega]
          Length = 436

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW-----PSTESIF 59
           S ++  E +     R  L+ + +A + G  P+S    +        R      PS E   
Sbjct: 118 SPQRQAEVLRNARTRAGLSRAEVAERIGCTPSSVRDWEEGRSRAVGRSLEWITPSPEYRD 177

Query: 60  KILAATNETICQL 72
           ++      T  + 
Sbjct: 178 RLADLLGYTSDER 190


>gi|42780950|ref|NP_978197.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|42736871|gb|AAS40805.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 142

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 5/110 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + ++ E    +   +A+K G+   +  + +         +P  +++  +    N T
Sbjct: 3   LGEQLKKLRESKGFSQEDVAKKIGVTRQAIYRWENNKS-----YPDIDNLILLSEMYNVT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           +  L+    +        E +         G    F   +     ++  +
Sbjct: 58  LDALIKGNQNMKEKIHIDEDDEDFEKENEFGFYIGFGLLIMSAFVEYEKI 107


>gi|17988717|ref|NP_541350.1| MerR family transcriptional regulator [Brucella melitensis bv. 1
          str. 16M]
 gi|23500652|ref|NP_700092.1| transcriptional regulator [Brucella suis 1330]
 gi|148558695|ref|YP_001257846.1| putative transcriptional regulator [Brucella ovis ATCC 25840]
 gi|225629381|ref|ZP_03787414.1| MerR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225686684|ref|YP_002734656.1| hypothetical protein BMEA_B0907 [Brucella melitensis ATCC 23457]
 gi|254695939|ref|ZP_05157767.1| hypothetical protein Babob3T_15192 [Brucella abortus bv. 3 str.
          Tulya]
 gi|254700125|ref|ZP_05161953.1| hypothetical protein Bsuib55_04584 [Brucella suis bv. 5 str. 513]
 gi|254710842|ref|ZP_05172653.1| hypothetical protein BpinB_11376 [Brucella pinnipedialis B2/94]
 gi|254720212|ref|ZP_05182023.1| hypothetical protein Bru83_11898 [Brucella sp. 83/13]
 gi|256029224|ref|ZP_05442838.1| hypothetical protein BpinM2_00940 [Brucella pinnipedialis
          M292/94/1]
 gi|256043791|ref|ZP_05446713.1| hypothetical protein Bmelb1R_04819 [Brucella melitensis bv. 1
          str. Rev.1]
 gi|256058912|ref|ZP_05449126.1| hypothetical protein Bneo5_00926 [Brucella neotomae 5K33]
 gi|256157420|ref|ZP_05455338.1| hypothetical protein BcetM4_00971 [Brucella ceti M490/95/1]
 gi|256253602|ref|ZP_05459138.1| hypothetical protein BcetB_04769 [Brucella ceti B1/94]
 gi|256262183|ref|ZP_05464715.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 2 str. 63/9]
 gi|260167682|ref|ZP_05754493.1| hypothetical protein BruF5_04739 [Brucella sp. F5/99]
 gi|260564976|ref|ZP_05835461.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 1 str. 16M]
 gi|261216367|ref|ZP_05930648.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261220739|ref|ZP_05935020.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261318414|ref|ZP_05957611.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261322848|ref|ZP_05962045.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261750617|ref|ZP_05994326.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261757118|ref|ZP_06000827.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99]
 gi|265985222|ref|ZP_06097957.1| transcriptional regulator [Brucella sp. 83/13]
 gi|265986212|ref|ZP_06098769.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265990218|ref|ZP_06102775.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995908|ref|ZP_06108465.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|306841347|ref|ZP_07474056.1| XRE family transcriptional regulator [Brucella sp. BO2]
 gi|17984528|gb|AAL53614.1| transcriptional regulator, merr family [Brucella melitensis bv. 1
          str. 16M]
 gi|23464297|gb|AAN34097.1| transcriptional regulator, putative [Brucella suis 1330]
 gi|148369980|gb|ABQ62852.1| putative transcriptional regulator [Brucella ovis ATCC 25840]
 gi|225615877|gb|EEH12926.1| MerR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225642789|gb|ACO02702.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260152619|gb|EEW87712.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 1 str. 16M]
 gi|260917974|gb|EEX84835.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260919323|gb|EEX85976.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261297637|gb|EEY01134.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261298828|gb|EEY02325.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261737102|gb|EEY25098.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99]
 gi|261740370|gb|EEY28296.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|262550205|gb|EEZ06366.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|263000887|gb|EEZ13577.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263091879|gb|EEZ16201.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 2 str. 63/9]
 gi|264658409|gb|EEZ28670.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|264663814|gb|EEZ34075.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306288650|gb|EFM59986.1| XRE family transcriptional regulator [Brucella sp. BO2]
 gi|326411076|gb|ADZ68140.1| MerR family transcriptional regulator [Brucella melitensis M28]
 gi|326554367|gb|ADZ89006.1| MerR family transcriptional regulator [Brucella melitensis M5-90]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|56416260|ref|YP_153335.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str. ATCC
          9150]
 gi|197365183|ref|YP_002144820.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str.
          AKU_12601]
 gi|11992069|gb|AAG42426.1|AF306456_3 regulatory protein SptAIC [Salmonella enterica subsp. enterica
          serovar Paratyphi A]
 gi|22135357|gb|AAM93162.1|AF508974_2 regulatory protein SbaIC [Salmonella enterica]
 gi|56130517|gb|AAV80023.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str. ATCC
          9150]
 gi|197096660|emb|CAR62275.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str.
          AKU_12601]
          Length = 78

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            I ++ ER  L+   LA  AGL  T     +R       R  S ++I +I +A   + 
Sbjct: 16 HNIRKLRERQGLSQEALADLAGLHRTYIGSVERCE-----RNISIDNIDRIASALGVSP 69


>gi|53720722|ref|YP_109708.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|167740433|ref|ZP_02413207.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167817647|ref|ZP_02449327.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
 gi|167912774|ref|ZP_02499865.1| putative transcriptional regulator [Burkholderia pseudomallei 112]
 gi|254198530|ref|ZP_04904951.1| putative DNA-binding protein [Burkholderia pseudomallei S13]
 gi|254300676|ref|ZP_04968121.1| putative DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|52211136|emb|CAH37125.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|157810610|gb|EDO87780.1| putative DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|169655270|gb|EDS87963.1| putative DNA-binding protein [Burkholderia pseudomallei S13]
          Length = 356

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 5/118 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  LT   LA K+G+   +  + +     G+   PSTE++  +       +   
Sbjct: 7   LAIARKRRQLTKKELAEKSGITAVTLTRLE----TGKTADPSTETLETLARVLGYPVDFF 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHNG 129
               + +  T     + +  +      +        F           +P    P   
Sbjct: 63  FGQDYEELTTDAASFRSLSTMSAAQRDAALAAGQIAFSLAEWINERFDLPVPDLPDLR 120


>gi|34762120|ref|ZP_00143128.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237741413|ref|ZP_04571894.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256846585|ref|ZP_05552042.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2]
 gi|294784172|ref|ZP_06749473.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27]
 gi|27888197|gb|EAA25255.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229430945|gb|EEO41157.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256718354|gb|EEU31910.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2]
 gi|294488242|gb|EFG35587.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27]
          Length = 184

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 36/191 (18%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + +      ++   LA K  L  +  ++ ++         PS E++ KI    +  
Sbjct: 3   IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L++    D R  E  +KE                      G          I   +N
Sbjct: 58  VAYLIEDEEDDIRNIEHIKKENIRY--------IESLDSNIKMG----------ILLSNN 99

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186
               ++           S    Y  G              + + I     ++    K   
Sbjct: 100 REKNMEPIIYEIGIDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148

Query: 187 SRRGRSIDLMS 197
             +G S+   S
Sbjct: 149 LSKGDSLYFKS 159


>gi|328885617|emb|CCA58856.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712]
          Length = 468

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             + R+ E   ++ + LAR   + P+  N+ +        R  +   + ++  A     
Sbjct: 7  GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDA-----RPLTVPVLLRLTEAFGVDP 61


>gi|328955940|ref|YP_004373273.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
 gi|328456264|gb|AEB07458.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
          Length = 218

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + +  +      +   LA++ GL   + +K +R         P T+++  +    + ++ 
Sbjct: 7  QRLAELRRTKGYSQEELAQRLGLSRQAISKWERAES-----SPDTDNLIALARLYSVSLD 61

Query: 71 Q 71
          +
Sbjct: 62 E 62


>gi|321157319|emb|CBW39301.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae]
          Length = 116

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + ++ +LT   +A K G+   ++   +R   +     P+ +++ KI    N +I 
Sbjct: 5  ERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKK-----PTQDNLVKIAQVLNVSID 59

Query: 71 QLLDLPFSD 79
           L+      
Sbjct: 60 YLVGNSDEH 68


>gi|306844614|ref|ZP_07477201.1| Cro/CI family transcriptional regulator [Brucella sp. BO1]
 gi|306275058|gb|EFM56821.1| Cro/CI family transcriptional regulator [Brucella sp. BO1]
          Length = 470

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 4  FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S +KI+    I R+    +LT + +A   G+ P+  N  +R       R  + + + K+
Sbjct: 1  MSERKIFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLLLKL 55

Query: 62 L 62
           
Sbjct: 56 A 56


>gi|300725006|ref|YP_003714331.1| hipB protein [Xenorhabdus nematophila ATCC 19061]
 gi|297631548|emb|CBJ92255.1| hipB protein [Xenorhabdus nematophila ATCC 19061]
          Length = 83

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S + +  AI    ++  LT    A + G+  ++ +  +             E++FK
Sbjct: 1  MKITSPQTLAVAIREQRKKKRLTQKDTADRVGIKQSTVSGFEN-----SPEKSKLETLFK 55

Query: 61 ILAATN 66
          +L++  
Sbjct: 56 LLSSLG 61


>gi|238922428|ref|YP_002935942.1| hypothetical protein EUBELI_20664 [Eubacterium eligens ATCC
          27750]
 gi|238874100|gb|ACR73808.1| Hypothetical protein EUBELI_20664 [Eubacterium eligens ATCC
          27750]
          Length = 48

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          S   KKI   +  + +  ++T   LA K  +   + ++ +   
Sbjct: 6  SMDQKKIGRFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGV 48


>gi|228909441|ref|ZP_04073266.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200]
 gi|228850218|gb|EEM95047.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|228922337|ref|ZP_04085644.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228837392|gb|EEM82726.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|228953898|ref|ZP_04115937.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228805866|gb|EEM52446.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|228940714|ref|ZP_04103277.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228973633|ref|ZP_04134215.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228980191|ref|ZP_04140505.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407]
 gi|228779549|gb|EEM27802.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407]
 gi|228786094|gb|EEM34091.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228818958|gb|EEM65020.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|229047313|ref|ZP_04192912.1| Helix-turn-helix domain protein [Bacillus cereus AH676]
 gi|228724055|gb|EEL75401.1| Helix-turn-helix domain protein [Bacillus cereus AH676]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|229071129|ref|ZP_04204355.1| Helix-turn-helix domain protein [Bacillus cereus F65185]
 gi|228712069|gb|EEL64018.1| Helix-turn-helix domain protein [Bacillus cereus F65185]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|229075522|ref|ZP_04208510.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18]
 gi|228707618|gb|EEL59803.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|229098072|ref|ZP_04229020.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29]
 gi|228685263|gb|EEL39193.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|229104167|ref|ZP_04234839.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28]
 gi|228679184|gb|EEL33389.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28]
          Length = 272

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|229134433|ref|ZP_04263246.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196]
 gi|228649054|gb|EEL05076.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|229146197|ref|ZP_04274572.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24]
 gi|228637256|gb|EEK93711.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14 THMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65 TNET 68
             +
Sbjct: 69 FEVS 72


>gi|326446151|ref|ZP_08220885.1| hypothetical protein SclaA2_34032 [Streptomyces clavuligerus ATCC
          27064]
          Length = 571

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            +  M E    + + LAR+ G+ P +  +            P  E + ++   
Sbjct: 13 RRLREMREASGRSYAALARRVGVSPATLYRYCSGRTVPLEFAP-VERLARLCGC 65


>gi|28211495|ref|NP_782439.1| putative transcriptional regulator sinR [Clostridium tetani E88]
 gi|28203936|gb|AAO36376.1| putative transcriptional regulator sinR [Clostridium tetani E88]
          Length = 171

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I R+ E+  L  + L+R +G++ +  +  +R   +     P+   + K+  A   TI 
Sbjct: 31 ANIKRIREQKGLGVNELSRISGVNASYISALERGEKQ----NPTITILKKLANALEVTID 86

Query: 71 QLLDLPFSDGRT 82
          +L+     +   
Sbjct: 87 ELMKSEPINYDK 98


>gi|330808460|ref|YP_004352922.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327376568|gb|AEA67918.1| Putative transcription factor, Xre family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 104

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +  AI R  +   LT + L  K G DP + ++ +          PS E++F +    
Sbjct: 6  LGPAIRRYRKVAGLTQAELGEKTGFDPKTISRFETGTYT-----PSVEALFLLANVL 57


>gi|319945875|ref|ZP_08020125.1| cro/CI family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|319747940|gb|EFW00184.1| cro/CI family transcriptional regulator [Streptococcus australis
          ATCC 700641]
          Length = 116

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + ++ +LT   +A K G+   ++   +R   +     P+ +++ KI    N +I 
Sbjct: 5  ERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKK-----PTQDNLVKIAQVLNVSID 59

Query: 71 QLLDLPFSD 79
           L+D     
Sbjct: 60 YLVDNSDEH 68


>gi|319796436|ref|YP_004158076.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
 gi|315598899|gb|ADU39965.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 102

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   + +     +++  +   L+   LA +AGL   +  + +   I+     P   ++ +
Sbjct: 1  MLQLTEE-----LEKARKAGGLSQEALATQAGLSRMTVQRIESGQID-----PRLSTLLE 50

Query: 61 ILAATNETIC 70
          +       + 
Sbjct: 51 MARVLGLELM 60


>gi|313114358|ref|ZP_07799890.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310623313|gb|EFQ06736.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 113

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I++       +   LA  +GL  ++ +  +R  ++     P+  SI KI      
Sbjct: 9  DILGRIEQERLSRGWSEYALAENSGLTQSTISTWRRRNLQ-----PNVASIEKICTGFGI 63

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
          T+ Q          T E+ E         P  
Sbjct: 64 TLSQFFQEEEPVYLTNEQNELLDLWAKLSPVQ 95


>gi|294850380|ref|ZP_06791112.1| conserved hypothetical protein [Staphylococcus aureus A9754]
 gi|294822723|gb|EFG39160.1| conserved hypothetical protein [Staphylococcus aureus A9754]
          Length = 197

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +R N+T   +A   G+   + NK +          P    +  I    + +
Sbjct: 3   IGDVIREYRKRKNMTQEQMANYLGVTAPAVNKWENGNS-----LPDITLLAPIARLLDIS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +  LL    +       K                 F       
Sbjct: 58  LDTLLSFHETLSNEEINKIITELDFKLREETYDEAFHYAKLNI 100


>gi|317152201|ref|YP_004120249.1| helix-turn-helix domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942452|gb|ADU61503.1| helix-turn-helix domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 108

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I  + ++  L+ S LA  AGL+     + +R          S +++ +I AA   
Sbjct: 7   KLGKRIRELRKKKELSQSRLAEMAGLNDKYLGEVERGSNN-----ISVKNLGQIAAALGV 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
              +LLD         +   +++  +    S  
Sbjct: 62  ETYELLDGAHEYEIDRKDITQKLHAIIEAASDE 94


>gi|260663657|ref|ZP_05864546.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
 gi|260551883|gb|EEX24998.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 115

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + +  NL+ + L +  G+  T+    +    E     PS+  + K+      +
Sbjct: 14 IGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTE-----PSSTYVTKLAELFEVS 68

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
             LLD   S  +       +  +
Sbjct: 69 TDYLLDHERSIRQPVTVDLADENV 92


>gi|256111164|ref|ZP_05452200.1| hypothetical protein Bmelb3E_01001 [Brucella melitensis bv. 3
          str. Ether]
 gi|265992675|ref|ZP_06105232.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|262763545|gb|EEZ09577.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|226307935|ref|YP_002767895.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226187052|dbj|BAH35156.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
           PR4]
          Length = 196

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 37/146 (25%), Gaps = 6/146 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +     R  LT  GLA + GL  +  +K +R         PS     KI    +  + 
Sbjct: 3   AFLRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGIST-----PSIAVALKIARVLDADVG 57

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           QL          T  + K+  +       S  +        G       V          
Sbjct: 58  QLFSDSMEGNAMTIVRAKDRVIDPASSVQSSVYDPIAPSMVGKAMQPFVVHPASVMGPKF 117

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDI 156
                ++        S+        +
Sbjct: 118 MDHTGEEFVF-VHSGSVEFEIPGQTM 142


>gi|153212378|ref|ZP_01948160.1| protein UmuD [Vibrio cholerae 1587]
 gi|124116586|gb|EAY35406.1| protein UmuD [Vibrio cholerae 1587]
          Length = 135

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                  +    +     K    SM  +    GD+LI++  ++    D ++     G+ V
Sbjct: 26  SIDLDGLLIQHPSATFIGKASGDSMQGVGIFDGDLLIVDRHLEAMNHDVIVANFN-GEFV 84

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE 208
            K+L  RR     L+S N       + 
Sbjct: 85  CKILDIRRR---LLLSANEKMQPVAIH 108


>gi|124002882|ref|ZP_01687733.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134]
 gi|123991532|gb|EAY30940.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134]
          Length = 115

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K++ + + ++ + H  T   +A K G    S+ + +    +  +      SI +I   T 
Sbjct: 4  KELLKIVKQLRKSHGFTQQQMATKLGWGKQSYERLENGRTQAFDLD-EITSIAQIFQLTA 62

Query: 67 ETICQLLDLPFS 78
            + +       
Sbjct: 63 TEMMEYHAPHGQ 74


>gi|77456432|ref|YP_345937.1| XRE family transcriptional regulator [Pseudomonas fluorescens
          Pf0-1]
 gi|77380435|gb|ABA71948.1| putative regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 82

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          +++ E I  + +   L+   LA++ G+   + +  +   
Sbjct: 2  EQLGELIRTLRKAQKLSQQALAQRYGMSRATISGIENNT 40


>gi|90425003|ref|YP_533373.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisB18]
 gi|90107017|gb|ABD89054.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisB18]
          Length = 471

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          +   + R+ E H LT + LA K G+  +  N+ +     
Sbjct: 6  LGVRLKRLREEHRLTQAALAAKLGISLSYLNQLENNQRP 44


>gi|118579549|ref|YP_900799.1| XRE family transcriptional regulator [Pelobacter propionicus DSM
          2379]
 gi|118502259|gb|ABK98741.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM
          2379]
          Length = 189

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          + +++ E I++           L  + GL  +  ++ KR   E     P+  ++ K    
Sbjct: 10 TPERLVEYINKAIAEKG--QKALEIEVGLSTSMISRYKRGIGE-----PTASTLQKFADY 62

Query: 65 TNETICQ 71
             ++ +
Sbjct: 63 FGVSVWE 69


>gi|269138974|ref|YP_003295675.1| hypothetical protein ETAE_1623 [Edwardsiella tarda EIB202]
 gi|294636493|ref|ZP_06714863.1| toxin-antitoxin system, antitoxin component, Xre family
          [Edwardsiella tarda ATCC 23685]
 gi|267984635|gb|ACY84464.1| hypothetical protein ETAE_1623 [Edwardsiella tarda EIB202]
 gi|291090256|gb|EFE22817.1| toxin-antitoxin system, antitoxin component, Xre family
          [Edwardsiella tarda ATCC 23685]
          Length = 102

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   LT + +A + G  PT+  + +     G++  PS  ++ K   AT 
Sbjct: 44 AARKNAGLTQAQVAERMGTKPTAITRMESNLASGQS-GPSFATLKKFAHATG 94


>gi|238025551|ref|YP_002909783.1| XRE family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237880216|gb|ACR32548.1| Transcriptional regulator, XRE family protein [Burkholderia glumae
           BGR1]
          Length = 191

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 13/151 (8%)

Query: 1   MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           M SFS +       I   +  + +R  LT   +A  AG+     ++ +R         PS
Sbjct: 1   MASFSDESTSAAAAIGARMRALRQRLKLTLDEVAAAAGISKPFLSQVERGRAT-----PS 55

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             S+  I  A   T+   ++ P        ++   +    F  S +     +    +   
Sbjct: 56  LASLAGIARALGVTMQYFVEAPSE--AKAVRRADTLQFFSFADSANSFARMTNPGSSRQL 113

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
              +     R P + + +   +   +  +  
Sbjct: 114 DAVLVRLPAREPGSPMPSDAGEQFLYVVRGE 144


>gi|256423924|ref|YP_003124577.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
          2588]
 gi|256038832|gb|ACU62376.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
          2588]
          Length = 82

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + ID + ER  ++   LA   G   +  +K  R          + E+I KI  A  
Sbjct: 25 DVVDRIDAIPERKGMSHRELAEALGKSESEISKWMRGT-----HNFTFETIAKINLALG 78


>gi|228940374|ref|ZP_04102945.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973291|ref|ZP_04133880.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979854|ref|ZP_04140175.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407]
 gi|228779869|gb|EEM28115.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407]
 gi|228786487|gb|EEM34477.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819500|gb|EEM65554.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941011|gb|AEA16907.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 374

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/201 (9%), Positives = 56/201 (27%), Gaps = 14/201 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +   +T   LA   G+   S +K +         +P    +  + +  N +
Sbjct: 6   IHKIIANKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I +L+       +   K         F                   ++   +        
Sbjct: 61  IDELISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECRGIIKKYYSCFPL------LI 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
            I  +              +    +  + + +   + +    L+ +  +      ++++R
Sbjct: 115 QIGILFINHHMLTEDTDRGI-EILEEAMNLFSRVQEESDDVSLVKEAASFQATCYLILNR 173

Query: 189 RGRSIDLMSLN--CCYPVDTV 207
               + L+       +P + +
Sbjct: 174 PNEVLQLLGETIRPNFPEEDL 194


>gi|229170504|ref|ZP_04298155.1| transcriptional regulator, XRE [Bacillus cereus AH621]
 gi|228612974|gb|EEK70148.1| transcriptional regulator, XRE [Bacillus cereus AH621]
          Length = 108

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  +T   LA    L  ++    +R       R P   ++ +I    N +
Sbjct: 5  GNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58


>gi|257053436|ref|YP_003131269.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
          12940]
 gi|256692199|gb|ACV12536.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
          12940]
          Length = 72

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I    E  NLT + LA   G+   +    ++         PS E  ++I    +  + ++
Sbjct: 7  IKERREDANLTQAELAEAVGVTRQTILYVEKGEYN-----PSLELAWRIAREFDTHVEEV 61

Query: 73 LDLPFSDGRTT 83
           DLP +     
Sbjct: 62 FDLPETTHEPE 72


>gi|209517499|ref|ZP_03266339.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209502032|gb|EEA02048.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 235

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 40/150 (26%), Gaps = 6/150 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 34  VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 88

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L    ++G      E+   ++      S                            
Sbjct: 89  VAAFLRRHATNGFEHLPAERSARVVSANGRYSARPLYPDDESI-AAEFHELRIAPLHTEA 147

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
           GI             D ++         L+
Sbjct: 148 GIRRAPGTTVNLVVSDGTLEVSVHDQRQLL 177


>gi|196043612|ref|ZP_03110850.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225864505|ref|YP_002749883.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|229184749|ref|ZP_04311948.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1]
 gi|196025921|gb|EDX64590.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225786797|gb|ACO27014.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|228598763|gb|EEK56384.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1]
          Length = 66

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I         T   LA++ G+   +    ++         PS    FKI     ++I 
Sbjct: 4  NRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFKIANVFEKSIT 58

Query: 71 QLLDLPF 77
           + D   
Sbjct: 59 DVFDYQE 65


>gi|149924579|ref|ZP_01912935.1| hypothetical protein PPSIR1_32734 [Plesiocystis pacifica SIR-1]
 gi|149814545|gb|EDM74129.1| hypothetical protein PPSIR1_32734 [Plesiocystis pacifica SIR-1]
          Length = 159

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 4/111 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I    E+  +T    A  AG+     ++ +     GR + P   ++ +I       
Sbjct: 53  LGQRIRSAREQRGMTQKQAALAAGIATDMISRLEN----GRYQSPGLRTLLRIAEGLGIA 108

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           + +LL     + R +  +      L      +       +           
Sbjct: 109 LSELLPDTNLEQRASPVELSHRARLIALAHRAEPRDLELIVDIAATIVNRP 159


>gi|146297213|ref|YP_001180984.1| XRE family transcriptional regulator [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145410789|gb|ABP67793.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 145

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 3  SFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
               +I +     I  + E   L  + LA+K  +  T+  + +   +      P  E++
Sbjct: 1  MLPEHEILKYLGLQIRVLREWAGLKQTELAKKLHISQTTLARYENGELR-----PPIETL 55

Query: 59 FKILAATNETICQLLDLPFSDGRT 82
           +I    + +I  LL    S    
Sbjct: 56 LRIADFFDVSIDALLGRKNSHKDP 79


>gi|260575082|ref|ZP_05843083.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
 gi|259022704|gb|EEW25999.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
          Length = 207

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +    T    A KAGL  ++ +K +   +      P+ E++ K+      
Sbjct: 26 NLGARVRELRKGRGWTLEQAAVKAGLARSTLSKIENGQM-----SPTYEAVKKLAEGLAI 80

Query: 68 TICQLLDLPF 77
          T+ QL   P 
Sbjct: 81 TVPQLFTPPS 90


>gi|182414108|ref|YP_001819174.1| XRE family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841322|gb|ACB75574.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1]
          Length = 96

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + + R+ E+  LT   LA +AG+D     + +     G       ++I K+  A  
Sbjct: 14 EILRKNLKRLREKQRLTQQDLAERAGIDYKYAQRIEAGHWPG----LQLKTIEKLAEALG 69

Query: 67 ETIC 70
              
Sbjct: 70 VPAW 73


>gi|171778435|ref|ZP_02919593.1| hypothetical protein STRINF_00444 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282836|gb|EDT48260.1| hypothetical protein STRINF_00444 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 183

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + +++ ++    A    +   + +  +         +P  E + KI      ++ Q
Sbjct: 5  NISELRKQYQMSQDDFANIFHVSRQTVSNWENGKS-----YPDVEMLVKISDYFGISVDQ 59

Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFP 96
          L+             +++       
Sbjct: 60 LIKKETIPSVAKNSDKQKKLWPMLA 84


>gi|146313711|ref|YP_001178785.1| XRE family transcriptional regulator [Enterobacter sp. 638]
 gi|145320587|gb|ABP62734.1| transcriptional regulator, XRE family [Enterobacter sp. 638]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 13/137 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I +++ R   R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A    
Sbjct: 8   IAKSLVRERTRTGLSLAEIARRAGIAKSTLSQLESGNGN-----PSLETLWSLCVALGIP 62

Query: 69  ICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
             +LL+      +            +      +       G   D  +       + +  
Sbjct: 63  FARLLEPQQPTTQVIRRGEGTKVTAEHAHYQAILLAACPPGARRDVYMLMAQPGADRISQ 122

Query: 121 PEIRSPHNGIYAIQTQD 137
           P        I   Q + 
Sbjct: 123 PHPPGSVEHIIVTQGRA 139


>gi|126699831|ref|YP_001088728.1| putative regulatory protein [Clostridium difficile 630]
 gi|254975814|ref|ZP_05272286.1| putative regulatory protein [Clostridium difficile QCD-66c26]
 gi|255093200|ref|ZP_05322678.1| putative regulatory protein [Clostridium difficile CIP 107932]
 gi|255101354|ref|ZP_05330331.1| putative regulatory protein [Clostridium difficile QCD-63q42]
 gi|255307230|ref|ZP_05351401.1| putative regulatory protein [Clostridium difficile ATCC 43255]
 gi|255314943|ref|ZP_05356526.1| putative regulatory protein [Clostridium difficile QCD-76w55]
 gi|255517617|ref|ZP_05385293.1| putative regulatory protein [Clostridium difficile QCD-97b34]
 gi|255650728|ref|ZP_05397630.1| putative regulatory protein [Clostridium difficile QCD-37x79]
 gi|255656203|ref|ZP_05401612.1| putative regulatory protein [Clostridium difficile QCD-23m63]
 gi|260683814|ref|YP_003215099.1| putative regulatory protein [Clostridium difficile CD196]
 gi|260687474|ref|YP_003218608.1| putative regulatory protein [Clostridium difficile R20291]
 gi|296450363|ref|ZP_06892120.1| probable regulatory protein [Clostridium difficile NAP08]
 gi|296878775|ref|ZP_06902776.1| probable regulatory protein [Clostridium difficile NAP07]
 gi|306520643|ref|ZP_07406990.1| putative regulatory protein [Clostridium difficile QCD-32g58]
 gi|115251268|emb|CAJ69099.1| Transcriptional regulator, HTH-type [Clostridium difficile]
 gi|260209977|emb|CBA63985.1| putative regulatory protein [Clostridium difficile CD196]
 gi|260213491|emb|CBE05194.1| putative regulatory protein [Clostridium difficile R20291]
 gi|296260773|gb|EFH07611.1| probable regulatory protein [Clostridium difficile NAP08]
 gi|296430203|gb|EFH16049.1| probable regulatory protein [Clostridium difficile NAP07]
          Length = 112

 Score = 44.4 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          K I + I     +   +   LA KAGL PT   + +R          S   I KI  A 
Sbjct: 6  KIIGDRIKVYRTKLGYSQEFLAEKAGLHPTYIGQIERAETNT-----SINIIMKIATAL 59


>gi|325912400|ref|ZP_08174795.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
 gi|325475742|gb|EGC78913.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
          Length = 109

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + + ++    NLT   LA K+GL   +    +        R PS E + KI    +  I
Sbjct: 4  GKKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISETFDCDI 58

Query: 70 CQLLDLPFSDGRTTEK 85
            L++   +       
Sbjct: 59 SALINHEPNSIFEIMH 74


>gi|322374209|ref|ZP_08048742.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150]
 gi|321276914|gb|EFX53986.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150]
          Length = 69

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E + +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIETNLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYN-----PSLEMALKIA 55

Query: 63 AATNETICQLLD 74
             N+ + +L  
Sbjct: 56 QVFNKQVEELFH 67


>gi|313885500|ref|ZP_07819250.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619230|gb|EFR30669.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 327

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +++  +    A   G+   S +K +     G    P    + ++    + +
Sbjct: 3  LADKIIELRKKNGWSQEEFAEMLGVSRQSVSKWE-----GAQSTPELNRLIQMSKIFSVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKE 89
             LL     +    +   + 
Sbjct: 58 TDYLLKDDVENLDPEQADLEW 78


>gi|312888747|ref|ZP_07748311.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311298747|gb|EFQ75852.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 101

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          KI   I        LT   LA K G   +  +K +    E R       ++ KI+ 
Sbjct: 38 KIGAMIHEARLEKGLTQEELAEKVGTTKSYISKIENNIKEVR-----FSTLKKIVE 88


>gi|297201607|ref|ZP_06919004.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
 gi|297147931|gb|EDY55056.2| DNA-binding protein [Streptomyces sviceus ATCC 29083]
          Length = 202

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ R   R  L+ S LA++AG+  ++ ++ +  G       PS E+++ +  A    
Sbjct: 28 IAASLRRERTRAGLSLSELAKRAGIAKSTLSQLEAAGGN-----PSVETLWALGVALGVP 82

Query: 69 I 69
           
Sbjct: 83 F 83


>gi|295106009|emb|CBL03552.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 153

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 11/153 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E++ RM    NLT   +AR+  +   + ++ +    E     P  +    I A  +  
Sbjct: 3   IGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETE-----PGVDMCKLIAATFDMP 57

Query: 69  ICQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN---KWNTVGVPEI 123
           + +   +              +E         G    F S  +  G          + E 
Sbjct: 58  LMELLEMPDKDYCQSCGMPFYQEADHGSEAGGGRSRDFCSMCYENGAFVRDETMEELIEE 117

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
            +PH       ++D        ++LP  ++ + 
Sbjct: 118 AAPHMAAACRISRDEAVSFMG-ALLPHLKRWEQ 149


>gi|255524575|ref|ZP_05391529.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296185777|ref|ZP_06854184.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
 gi|255511728|gb|EET88014.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296049605|gb|EFG89032.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
          Length = 231

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           FS K     + +  +   LT   L +K  L   S  + +        + PS   + KI 
Sbjct: 1  MFSQK-----LKKYRKELGLTQKDLGKKLDLSKESIGQLETG-----LKEPSKALLEKIY 50

Query: 63 AATNETICQLLDLPFSD 79
            + + +   LD     
Sbjct: 51 KFSGKNMNWWLDKNEQF 67


>gi|229194113|ref|ZP_04320982.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
 gi|228589370|gb|EEK47320.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
          Length = 108

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  +T   LA+   L  ++    +R       R P   ++ +I      +
Sbjct: 5  GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFKVS 58


>gi|229197431|ref|ZP_04324158.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293]
 gi|228586055|gb|EEK44146.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293]
          Length = 374

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/194 (9%), Positives = 51/194 (26%), Gaps = 14/194 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             N +I +L+       +   K         F                   ++   +   
Sbjct: 56  YFNISIDELICYTPQMEQEDIKDLYHRLAEAFSEKPFDEVMMECREIIKKYYSCFPL--- 112

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182
                 +  +              + +  +   L      +    D  L+ +  +     
Sbjct: 113 ---LLQMGLLFINHHMLTEDTDKRIEILEEAMYLFSRVQEE--SDDVSLVKEAVSFQATC 167

Query: 183 KVLISRRGRSIDLM 196
            +++++    + L+
Sbjct: 168 YLILNKPNEVLQLL 181


>gi|221231799|ref|YP_002510951.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669]
 gi|220674259|emb|CAR68796.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669]
          Length = 158

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGENKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 117 DLSDLIHTNIYLVETFDE 134


>gi|212634305|ref|YP_002310830.1| helix-turn-helix domain-containing protein [Shewanella
          piezotolerans WP3]
 gi|212555789|gb|ACJ28243.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3]
          Length = 328

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I R+ ++   +   LA K  +   S +K +          P    I  +      +
Sbjct: 3  LADKIIRLRKQCGWSQEDLAEKMNVSRQSVSKWESANSI-----PDLNRIITLAEIFEVS 57


>gi|196251088|ref|ZP_03149768.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|196209382|gb|EDY04161.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 46

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          + E I +      L+   L+ K G+  ++  K +    
Sbjct: 3  LGEKIKKARTEAGLSQEQLSEKLGVSRSAVAKWESGKG 40


>gi|124514561|gb|EAY56074.1| ParB-like partition protein [Leptospirillum rubarum]
          Length = 313

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 13/182 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I  AID + +R+ LT    A+  G   +  ++             S E+  K L     
Sbjct: 127 EIARAIDEIVKRYGLTQETCAKALGKSRSYVSRHLSLL-------MSDETTMKALETGMI 179

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              + + L         ++  +  L    P       +                   +  
Sbjct: 180 RDPEAVTLMNRMESGVRQEFLDRALSTNTPITVRAVREELERTESPGRREFSGSFGAAEP 239

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              Y ++        +  S  P     +   +  +      D +++      +  K+L  
Sbjct: 240 TLPYPVEES------RPPSSAPELSIDETREVGKSRPPEAKDPVVMIDLPLGVWKKLLGR 293

Query: 188 RR 189
             
Sbjct: 294 LG 295


>gi|58580009|ref|YP_199025.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84622006|ref|YP_449378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|166713709|ref|ZP_02244916.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola
          BLS256]
 gi|58424603|gb|AAW73640.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84365946|dbj|BAE67104.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
          311018]
          Length = 66

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E    +   L  + G+   + N  +    +     PS    F+I     E+I 
Sbjct: 3  SRVRELREASGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 HVFLYED 64


>gi|332981641|ref|YP_004463082.1| signal peptidase I [Mahella australiensis 50-1 BON]
 gi|332699319|gb|AEE96260.1| signal peptidase I [Mahella australiensis 50-1 BON]
          Length = 194

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 140 HKTQDTSMLPLYRKGDILILN----SAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSI 193
              + +SM+P    GD+LI++       +   GD ++ K      +   K +I+  G  I
Sbjct: 38  ITVEGSSMVPTLNDGDMLIVDKISYRFNEPQRGDIVIFKYPGDMKENFVKRIIALGGDEI 97

Query: 194 DLM 196
           ++ 
Sbjct: 98  EVK 100


>gi|330685364|gb|EGG97023.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU121]
          Length = 67

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +  R     + LA+KAG+   + +  +R         PS  +  KI    N
Sbjct: 3  NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFT-----PSILTAMKIARIFN 53


>gi|313499627|gb|ADR60993.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 99

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          A+ R  +   LT + LA + G DP + ++ +          PS ++I             
Sbjct: 4  ALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYT-----PSIDAIMAFAQVLGVKPKD 58

Query: 72 LLDLPF 77
              P 
Sbjct: 59 FFAEPD 64


>gi|302520335|ref|ZP_07272677.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|302429230|gb|EFL01046.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 126

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + +A+        L+ S LA +AG+     ++ +  G +     P    + + L     
Sbjct: 52  DLGQAVHDRRVELGLSQSELAERAGMTQPQVSRME--GGDTVPTLPLLRRLARALDGALN 109

Query: 68  TICQLLDLPFSDGRTT 83
                 D   +     
Sbjct: 110 LAIDENDSHVTFTPHA 125


>gi|285018010|ref|YP_003375721.1| hypothetical protein XALc_1223 [Xanthomonas albilineans GPE PC73]
 gi|283473228|emb|CBA15733.1| hypothetical protein XALc_1223 [Xanthomonas albilineans]
          Length = 125

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           I E I        L+ + L+R  G++  +    +    
Sbjct: 68  IAERIRLARNDRGLSQTELSRLLGVNRATVGHWESGES 105


>gi|256396335|ref|YP_003117899.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256362561|gb|ACU76058.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 470

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 1  MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          M      ++  A + R  E   LT    A +AG++ ++  + +        
Sbjct: 1  MAKPRQSRLRRAGLARAREAAGLTQEAFATRAGVEVSTVVRWESGCTTPLP 51


>gi|225375548|ref|ZP_03752769.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM
           16841]
 gi|225212527|gb|EEG94881.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM
           16841]
          Length = 145

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++ + ++++   LA + G+   + +K +          P  E   ++      T+ 
Sbjct: 10  ENLIQLRKLNHMSQDELADQIGVSRQTLSKYETGES-----LPDIERCKRLADVFGVTVD 64

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
            L++    D    E   K   +      G  G  
Sbjct: 65  DLINYEKKDSLGLEVPPKGKHIFGMVKVGEKGQI 98


>gi|222530426|ref|YP_002574308.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457273|gb|ACM61535.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 122

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI + +    ++  LT   +A   G++    +  +        R  S E++ ++     
Sbjct: 8  KKIGQKLQEARKKAGLTQEQVADYLGVNKVQLSYYENGA-----REISIETLQQLADLYG 62

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
           T+   LD   S         +   L 
Sbjct: 63 YTLNYFLDDEKSTDPAVSFSFRGEELE 89


>gi|126669133|ref|ZP_01740061.1| hypothetical protein MELB17_05544 [Marinobacter sp. ELB17]
 gi|126626403|gb|EAZ97072.1| hypothetical protein MELB17_05544 [Marinobacter sp. ELB17]
          Length = 96

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 13 IDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ID++     +  LT   LA+K G   ++ ++ +R         PS  ++ K  AA   
Sbjct: 30 IDQLITMRTKAGLTQEDLAKKLGTSKSNISRLERGRGN-----PSWGTLSKYAAACGF 82


>gi|18310949|ref|NP_562883.1| DNA-binding protein [Clostridium perfringens str. 13]
 gi|110801118|ref|YP_696646.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|168204849|ref|ZP_02630854.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|168208668|ref|ZP_02634293.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|168212998|ref|ZP_02638623.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|168215593|ref|ZP_02641218.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|169343522|ref|ZP_02864521.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|182624367|ref|ZP_02952151.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|18145631|dbj|BAB81673.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110675765|gb|ABG84752.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|169298082|gb|EDS80172.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|170663587|gb|EDT16270.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170713177|gb|EDT25359.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|170715478|gb|EDT27660.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|177910370|gb|EDT72747.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|182382433|gb|EDT79912.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 179

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I R+     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2  EIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLT-----SPSIATLIDILDILGT 56

Query: 68 TICQLL 73
           + +  
Sbjct: 57 NLTEFF 62


>gi|296110774|ref|YP_003621155.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU
           11154]
 gi|295832305|gb|ADG40186.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU
           11154]
          Length = 171

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 6/138 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I    +  N+T S LA K  +   + +  +          P  +++  I      ++ +L
Sbjct: 7   IKTKRQELNITQSELAEKLFVSNKTISNWETGKT-----MPDLDNVLYIAKILRISLDKL 61

Query: 73  LDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L             +E          +         +F T + +  + VP +     G +
Sbjct: 62  LLEDNHMIDHVKHIQEIRATRKMTWVASITNIIFFLMFSTQSFFGQLPVPFLVMMLIGAW 121

Query: 132 AIQTQDTRHKTQDTSMLP 149
           A         ++  S+  
Sbjct: 122 ANIWVLFHFLSKTDSLED 139


>gi|297564958|ref|YP_003683930.1| XRE family transcriptional regulator [Meiothermus silvanus DSM
          9946]
 gi|296849407|gb|ADH62422.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM
          9946]
          Length = 84

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I ++ ++  L+   LA +AG+  +   K +R    G  R PS     K+    
Sbjct: 7  IRQLRKQAGLSQEALAVEAGITVSLLTKYER----GEVRRPSLVCSRKLAKVL 55


>gi|210630657|ref|ZP_03296539.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM
          13279]
 gi|210160390|gb|EEA91361.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM
          13279]
          Length = 152

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  +  R  L    LA  AG+  ++    +      R +    ++I + L     ++
Sbjct: 15 GSRIRELRTRRGLLQRELAEMAGVTESAVRNYELGLRTPRPQH--LKAIARALEVDPASL 72

Query: 70 CQL 72
             
Sbjct: 73 VDY 75


>gi|192361034|ref|YP_001984168.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus
          Ueda107]
 gi|190687199|gb|ACE84877.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus
          Ueda107]
          Length = 72

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          K+  + + ++     +T   LA + G+   S +  +R         PS +++ K+ 
Sbjct: 5  KQFGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIY-----GPSFDTLEKLA 55


>gi|150018438|ref|YP_001310692.1| XRE family transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904903|gb|ABR35736.1| transcriptional regulator, XRE family [Clostridium beijerinckii
           NCIMB 8052]
          Length = 226

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  + +   L+   LA   G+   S  K +         +P    +  +      +I 
Sbjct: 5   EQLQTLRKAKGLSQEKLAEFLGISRQSVAKWEVGQS-----YPDIARLIALSEFFKVSID 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +L++    + R + ++ K   +             +     G 
Sbjct: 60  KLVNDYEENCRLSIEENKVNNINRNIIDFLCRAKKATYAGNGG 102


>gi|126175739|ref|YP_001051888.1| XRE family transcriptional regulator [Shewanella baltica OS155]
 gi|125998944|gb|ABN63019.1| putative transcriptional regulator, XRE family [Shewanella
          baltica OS155]
          Length = 81

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +  +   A+ +M +   L+   LA +A +D +   + +R          + + ++K
Sbjct: 1  MKTLA-TEFGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEAN-----ITLDMLYK 54

Query: 61 ILAATNETICQ 71
          I    +    +
Sbjct: 55 IAEVLDCEPHE 65


>gi|113476347|ref|YP_722408.1| XRE family transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110167395|gb|ABG51935.1| transcriptional regulator, XRE family [Trichodesmium erythraeum
           IMS101]
          Length = 113

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 3/101 (2%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ +    +   LA+  G+D T  +K +    +     P  E I  +    N    +L
Sbjct: 9   IRKVRKDKGYSQRELAKHLGVDFTYLSKLENDRADY---APKEEVIRGLAKNLNLNPEEL 65

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           + L     +  E+  K+ P                 +    
Sbjct: 66  IFLAGRIPQQYEEVLKQNPREMQVLFQRMKENPEFAYEISQ 106


>gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens
          MLS10]
 gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens
          MLS10]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   +   I        LT   L+ K GL  +  ++ +R         P+  S+ KI  
Sbjct: 1  MTESDLARQIRVSRTNAGLTLKELSEKTGLSVSFISQVERGTS-----SPAISSLKKIAD 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
            N  I        +   T+   E+    +   P+
Sbjct: 56 GLNVPITSFFTPEQNTTYTSVASEQRSFRIDDSPA 90


>gi|295108102|emb|CBL22055.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 174

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 13/140 (9%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S++ I +A+ ++ + + L+    A   G+   + ++ +          P+  ++  I   
Sbjct: 39  SNQNIAKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSV-----PNINTLILISEK 93

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
            +  + ++L   +   +    K        +                     ++      
Sbjct: 94  FDIPVDEMLKSGYVVEKIDNNKTSFKKDRNYSIVFLTIGIL--------GLISIPFEMSA 145

Query: 125 SPHNGIYAIQTQDTRHKTQD 144
             HN                
Sbjct: 146 DDHNCTSHFGVDAFCLALHG 165


>gi|242399175|ref|YP_002994599.1| Putative HTH-type transcriptional regulatory protein TK0539
           [Thermococcus sibiricus MM 739]
 gi|242265568|gb|ACS90250.1| Putative HTH-type transcriptional regulatory protein TK0539
           [Thermococcus sibiricus MM 739]
          Length = 319

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 40/162 (24%), Gaps = 6/162 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATNET 68
            + +  + E H  +   LA   G+   S    ++             E +F    A    
Sbjct: 129 GKYLRELRESHGYSVGELAELLGVSRKSLQNYEKGEQAMSLEIALRLEELFDAPVAKPID 188

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I         +     + EKEI                  F   ++   + +    S   
Sbjct: 189 ILNSKVEAKMNVEPETELEKEIFNRLETFGMRVVKIKKAPFDAISREEGLKILTGISERR 248

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
               ++     ++        +     + IL        G+ 
Sbjct: 249 TTSTLKRAQMVNEVS-----KIIHSDGLFILKKTKTEVVGEI 285


>gi|227514760|ref|ZP_03944809.1| bacteriophage transcriptional regulator [Lactobacillus fermentum
          ATCC 14931]
 gi|227086869|gb|EEI22181.1| bacteriophage transcriptional regulator [Lactobacillus fermentum
          ATCC 14931]
          Length = 115

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + +  NL+ + L +  G+  T+    +    E     PS+  + K+      +
Sbjct: 14 IGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTE-----PSSTYVTKLAELFEVS 68

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
             LLD   S  +       +  +
Sbjct: 69 TDYLLDHERSIRQPVTVDLADENV 92


>gi|261407406|ref|YP_003243647.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261283869|gb|ACX65840.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10]
          Length = 201

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 36/192 (18%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + E+  L+   +A   G+  T   + +R         PS  +++KI      +
Sbjct: 24  LANNLKILREQRKLSLDKVAEMTGISKTMLGQIERGES-----SPSITTVWKIANGLKLS 78

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L++ P S      ++E +  +                      +      + R    
Sbjct: 79  FSSLINEPHSGTVVVSREEVQALVEDNGRIR--------------IYPYFPYEDGRRFEM 124

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
               ++           S        +  I      V  G+  + +    +   K     
Sbjct: 125 YSLEMEHGGYL------SAEAHIEGTEEFI-----TVFDGEVTI-RVDHEEYTVKQ---- 168

Query: 189 RGRSIDLMSLNC 200
            G SI   +   
Sbjct: 169 -GESIRFKADKP 179


>gi|160935724|ref|ZP_02083099.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441468|gb|EDP19178.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC
           BAA-613]
          Length = 194

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/191 (8%), Positives = 35/191 (18%), Gaps = 22/191 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR---NRWPSTESIFKILAA 64
           K+   I  +     +T   LA    +   + +K +R          R  S      I   
Sbjct: 5   KVGNLIYTLRTEKGMTQKALANAMNISDRTISKWERGAGCPDVSLLRELSDILGVNIEKI 64

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
               +        +  R           +      +                    P   
Sbjct: 65  LLGDLEPNKKDGGNMKRIKFYVCPVCGNVISSTGMAEISCCGRKLNALKA-----RPADL 119

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-------------AIQVNCGDRL 171
           S      A++         D             + +                    G  +
Sbjct: 120 SHSVSAKAVEGDYYITLEHDMEKQHYITFMAYAVYDRVLLMKLYPEQAAQVRFPRSGHGV 179

Query: 172 -LIKPRTGDIV 181
             I   +  + 
Sbjct: 180 LYICCNSHGLF 190


>gi|157377494|ref|YP_001476094.1| transcriptional regulator protein-like protein [Shewanella
          sediminis HAW-EB3]
 gi|157319868|gb|ABV38966.1| transcriptional regulator protein-like protein [Shewanella
          sediminis HAW-EB3]
          Length = 78

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +  +    N T + LA K  +   + N  ++   +     PS    FK+      +
Sbjct: 3  NRLKVLRAERNWTQADLAEKLDVSRQTINAIEKGKYD-----PSLPLAFKVARLFEAS 55


>gi|91785146|ref|YP_560352.1| XRE family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689100|gb|ABE32300.1| transcriptional regulator, XRE family [Burkholderia xenovorans
           LB400]
          Length = 229

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 32  VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L    ++G      E+   ++      S         PT  +++ + +  + +   
Sbjct: 87  VAAFLRRHATNGFEHLPAERSSRVVSSNGRYSARPLYPDGEPTAAEFHELRIAPLHTEAG 146

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
              A           + ++         L+
Sbjct: 147 TRRA-PGTTVNLVVSEGTLEVSVHDQRQLL 175


>gi|71910944|ref|YP_282494.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS5005]
 gi|71853726|gb|AAZ51749.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS5005]
          Length = 73

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       +   +  +  R  +  + +A+ AG+   + +  +R         PS     K
Sbjct: 1  MAM--EVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAMK 53

Query: 61 ILAATNETICQLLDLPF 77
          I     E + ++  L  
Sbjct: 54 IAKVFQEPVEEVFRLVE 70


>gi|322516069|ref|ZP_08069006.1| XRE family transcriptional regulator [Streptococcus vestibularis
           ATCC 49124]
 gi|322125484|gb|EFX96830.1| XRE family transcriptional regulator [Streptococcus vestibularis
           ATCC 49124]
          Length = 233

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/100 (9%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + ++ +  N+T S LA+K  +   + ++ ++     +      + +  +   +   +
Sbjct: 27  MSKLRKLRKAKNMTQSELAKKIKVSEKTISRWEKDKTLMKAN--KAKELADLFGVSVGYL 84

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
              +D           + ++  +L +            +F
Sbjct: 85  LGYIDDSEIYDDEVVIEPEKGMILAYSLERFNKKHQEKMF 124


>gi|310825864|ref|YP_003958221.1| transcriptional regulator [Eubacterium limosum KIST612]
 gi|308737598|gb|ADO35258.1| transcriptional regulator [Eubacterium limosum KIST612]
          Length = 112

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    HK I   I +     N++   LARK G+ PT     +        +  S +S+ +
Sbjct: 1  MEELDHKAIGLRIRKQRTFLNMSRDELARKIGITPTFLADIELGT-----KGFSLKSLNR 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEK 85
                 +   +L  P     T   
Sbjct: 56 FSNVLKMSADAILYGPKEYMGTKYA 80


>gi|307265009|ref|ZP_07546570.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|306919994|gb|EFN50207.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
          Length = 74

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           + ++ ++  LT + +A+K G+  TS+   +          PS     KI          
Sbjct: 4  YLKKIRKQAGLTQAEIAKKVGIARTSYTNIELGIKN-----PSFNVATKIKKVLGVNNDD 58

Query: 72 LL 73
          + 
Sbjct: 59 IF 60


>gi|291523917|emb|CBK89504.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
 gi|291528619|emb|CBK94205.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 213

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I     +  +T   +A   G+   + +  +         +P   S+ K+      
Sbjct: 4  DIGSKIKAARLKKKMTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSDYYEA 58

Query: 68 T 68
          +
Sbjct: 59 S 59


>gi|282933144|ref|ZP_06338531.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus jensenii 208-1]
 gi|281302648|gb|EFA94863.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus jensenii 208-1]
          Length = 108

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           +E I +  + H  +   LA K+G+   +           +++ PST S+ K+ +  N ++
Sbjct: 4   FEKIKKYCKEHGTSIQELAEKSGISAGTIYNW-------KHKTPSTTSLEKMASVMNVSV 56

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             L                   L ++            
Sbjct: 57  SSLFTDADESSNNEVDLNNNANLYFYDGKPIPKEDMDY 94


>gi|260664300|ref|ZP_05865153.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US]
 gi|260562186|gb|EEX28155.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US]
          Length = 88

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +     +  ++ + LA++ GL      + ++         P+ E++ K      
Sbjct: 25 LSFLQVQRLKSGISQTELAKRTGLTQPQIARIEKLDST-----PTLETLNKYAKGLG 76


>gi|256851406|ref|ZP_05556795.1| predicted protein [Lactobacillus jensenii 27-2-CHN]
 gi|260660827|ref|ZP_05861742.1| predicted protein [Lactobacillus jensenii 115-3-CHN]
 gi|256616468|gb|EEU21656.1| predicted protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548549|gb|EEX24524.1| predicted protein [Lactobacillus jensenii 115-3-CHN]
          Length = 117

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           +E I +  + H  +   LA K+G+   +           +++ PST S+ K+ +  N ++
Sbjct: 13  FEKIKKYCKEHGTSIQELAEKSGISAGTIYNW-------KHKTPSTTSLEKMASVMNVSV 65

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             L                   L ++            
Sbjct: 66  SSLFTDADESSNNEVDLNNNANLYFYDGKPIPKEDMDY 103


>gi|256852139|ref|ZP_05557526.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260661292|ref|ZP_05862205.1| predicted protein [Lactobacillus jensenii 115-3-CHN]
 gi|282932144|ref|ZP_06337598.1| transcriptional regulator [Lactobacillus jensenii 208-1]
 gi|297204982|ref|ZP_06922378.1| XRE family transcriptional regulator [Lactobacillus jensenii
           JV-V16]
 gi|256615551|gb|EEU20741.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260547747|gb|EEX23724.1| predicted protein [Lactobacillus jensenii 115-3-CHN]
 gi|281303737|gb|EFA95885.1| transcriptional regulator [Lactobacillus jensenii 208-1]
 gi|297149560|gb|EFH29857.1| XRE family transcriptional regulator [Lactobacillus jensenii
           JV-V16]
          Length = 138

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I E +  M     ++   LA K  +   S +K +    +        + + ++   + 
Sbjct: 2   DQINERLKEMRLNAGMSQEELASKLNVSRQSVSKWE--TGDSLPDILKLKQLSQLYDVSI 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           + I    +    +      K+  +       +  G  + +           +
Sbjct: 60  DYIVGNKNFDKKEETQETSKQNLLKKQRAKRALKGILWGTASMLAAFGMEVL 111


>gi|213051669|ref|ZP_03344547.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 176

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 49/204 (24%), Gaps = 40/204 (19%)

Query: 18  ERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           E +   T   L    G+  ++   +  R            E + +    T  ++  L   
Sbjct: 3   EAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSLNWLTTG 55

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
             S   +      E+                     G           +      +    
Sbjct: 56  HGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPSTFKKP- 100

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
                     +        +         +  G  ++     G++  + +    G  I +
Sbjct: 101 -----FVITDNNSEFICDKEF------DDIRDGKWVISID--GEVTIRDITRLPGGRIFV 147

Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
              N  +     ++ DIE I +I+
Sbjct: 148 EGGNRAF---ECKIEDIEIIGKII 168


>gi|213022221|ref|ZP_03336668.1| repressor protein [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 175

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 49/204 (24%), Gaps = 40/204 (19%)

Query: 18  ERHNL-TPSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           E +   T   L    G+  ++   +  R            E + +    T  ++  L   
Sbjct: 2   EAYGFKTRQALCDHLGISKSTLATRYMRD-------SFPAEWVIQCALETGTSLNWLTTG 54

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
             S   +      E+                     G           +      +    
Sbjct: 55  HGSKQTSGNTNTMEVAKYVLSD--------------GALREDGFYIFDKGFLPSTFKKP- 99

Query: 136 QDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
                     +        +         +  G  ++     G++  + +    G  I +
Sbjct: 100 -----FVITDNNSEFICDKEF------DDIRDGKWVISID--GEVTIRDITRLPGGRIFV 146

Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
              N  +     ++ DIE I +I+
Sbjct: 147 EGGNRAF---ECKIEDIEIIGKII 167


>gi|196037154|ref|ZP_03104469.1| transcriptional regulator [Bacillus cereus W]
 gi|195990258|gb|EDX54311.1| transcriptional regulator [Bacillus cereus W]
          Length = 116

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I E I  + + + +T   L    G+   + +  ++       + P  ES+ KI    N
Sbjct: 2  IGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKG-----KKSPGRESLEKIADYFN 54


>gi|153853834|ref|ZP_01995190.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814]
 gi|149753584|gb|EDM63515.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814]
          Length = 377

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I ++  + ++T   LA K G+   S +K +          P  E +  +      +
Sbjct: 3  LGEKIYKLRTKRSMTQEQLAEKIGVSRQSVSKWETDSAI-----PDIEKLKLLAEIFEVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
          I +LL +   +    + +++ I  
Sbjct: 58 ITELLGMECEEDTKRKDEKERIEH 81


>gi|294629300|ref|ZP_06707860.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces sp. e14]
 gi|292832633|gb|EFF90982.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces sp. e14]
          Length = 406

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 4/121 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  + ER  LT + LA   G+ P +  K +     G+ + P  + + +I  A     
Sbjct: 7   GQRVQILRERRGLTQAQLADFVGISPHTMRKIEN----GQQKAPGLDMVLRIAEALRVRD 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L                  L     +         V P         +       + 
Sbjct: 63  LADLTGRPEAHVDLFVGPGHPRLAAVKAAVDSFELAHAVEPPRVGHLEARLHAAWRARHQ 122

Query: 130 I 130
            
Sbjct: 123 A 123


>gi|266625424|ref|ZP_06118359.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
 gi|288862669|gb|EFC94967.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
          Length = 232

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KKI E +  + +   LT   LA    +   + ++ +          P    + ++    +
Sbjct: 4  KKIGEFLKVLRKEKGLTQEQLAESLLVSGRTVSRWETGMN-----MPDLSVLIQMAEFYD 58

Query: 67 ETICQ 71
            + +
Sbjct: 59 VEVKE 63


>gi|255690854|ref|ZP_05414529.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides finegoldii DSM 17565]
 gi|260623486|gb|EEX46357.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides finegoldii DSM 17565]
          Length = 132

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 9/114 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  + + I+R+     +T + L    G+   + +K ++            E + KI +A 
Sbjct: 11  HLHLGKKIERVRRLRGMTQTELGELLGITKQAVSKMEQTEK------IDDERLEKIASAL 64

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
             T   L +              E   +      +  F     FP         
Sbjct: 65  GVTTDGLKEYNEETVLYNTNNFYENCGVKNAIGNNQTF---NNFPIEQTIELFE 115


>gi|298530403|ref|ZP_07017805.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298509777|gb|EFI33681.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 93

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +     +  LT + LAR+ G+      + +          PS +++ K  AAT   
Sbjct: 34 LIEARTKAGLTQTELARRMGMKQAGIARLESG-----RHNPSMKTLQKYAAATGHE 84


>gi|146317667|ref|YP_001197379.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145688473|gb|ABP88979.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
          Length = 111

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K++ + I  +    NL+   LA K  +   + +K +          P  + + +
Sbjct: 1  MIM---KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEAT-----PDIDKLVQ 52

Query: 61 ILAATNET 68
          +      +
Sbjct: 53 LAEIFGVS 60


>gi|39653689|ref|NP_945254.1| transcriptional regulator [Streptococcus phage EJ-1]
 gi|38638857|emb|CAE82097.1| transcriptional regulator [Streptococcus phage EJ-1]
          Length = 58

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          W+    +     +T   LA KAG+ P +           +    S +++ KI  A   +I
Sbjct: 2  WKKFKHLLIEKGMTQKALAEKAGISPNTIRTI-------KTERISFKNMCKIADALGISI 54

Query: 70 CQ 71
           +
Sbjct: 55 DE 56


>gi|75910930|ref|YP_325226.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
          29413]
 gi|75704655|gb|ABA24331.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
          29413]
          Length = 82

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KI + I  +     LT    A   G+   + N+ +      +    + + I  +L   
Sbjct: 11 QPKIGQFIQEIRLVMGLTQEEFAVILGVTFPTVNRWENGHT--KPSKLAIQQIEALLDKL 68

Query: 66 NET 68
           + 
Sbjct: 69 GKD 71


>gi|78062077|ref|YP_371985.1| transcriptional regulator [Burkholderia sp. 383]
 gi|77969962|gb|ABB11341.1| transcriptional regulator, XRE family with cupin sensor domain
           [Burkholderia sp. 383]
          Length = 220

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 45/160 (28%), Gaps = 6/160 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I + +  + +  +LT +  ++  G+   +F++ +   +      P+   + +I+    
Sbjct: 29  DQIGQRLRALRQSRDLTLNEASQLTGVPAATFSRIETNKM-----SPTFGVLHRIIEGMG 83

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVGVPEIRS 125
                +L        +      E  +     +    +         G     + V     
Sbjct: 84  FDWRDVLTNQPRHRNSLSVCHAEDIVTTRIANIPYEYALLHRDSSAGMITLRMQVDARTV 143

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
              G  A    D         +   +  G+   L +    
Sbjct: 144 DEAGGLAGHEGDEFCYVLSGELELHFEHGEPTRLRAGESA 183


>gi|11499990|ref|NP_071236.1| hypothetical protein AF2414 [Archaeoglobus fulgidus DSM 4304]
 gi|3183466|sp|O30257|Y2414_ARCFU RecName: Full=Uncharacterized HTH-type transcriptional regulator
          AF_2414
 gi|2650680|gb|AAB91252.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 229

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +   EA+ +     N + S LARK G+ P+  +  +        R P T  + K + A 
Sbjct: 18 ENSGEALRKWRSIFNASQSDLARKLGISPSVISDYESG-----RRKPGTAFLKKFVCAL 71


>gi|325970608|ref|YP_004246799.1| SOS-response transcriptional repressor, LexA [Spirochaeta sp.
           Buddy]
 gi|324025846|gb|ADY12605.1| SOS-response transcriptional repressor, LexA [Spirochaeta sp.
           Buddy]
          Length = 206

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 4/76 (5%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGD--IVAKVLISRRG 190
           +      K +  SM+      GDI I+        G+ +       +  I  K       
Sbjct: 114 RNTYFALKVRGESMIDEGIFDGDIAIIKKCEVAETGEIIAATVGEDEPGITLKGYYP-SN 172

Query: 191 RSIDLMSLNCCYPVDT 206
             I+L   N       
Sbjct: 173 GYIELRPANASMGPII 188


>gi|313668496|ref|YP_004048780.1| DNA-binding protein [Neisseria lactamica ST-640]
 gi|313005958|emb|CBN87415.1| putative DNA-binding protein [Neisseria lactamica 020-06]
          Length = 110

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S  ++ +  A+ +  +   LT + LA +  L   + ++ +R  I       + E + +
Sbjct: 1  MKSPINQTVGRAMAKWRKVSGLTQAQLAERLNLSLDAVSRLERGNI-----ALTVERLVE 55

Query: 61 ILAATNETICQ 71
          +          
Sbjct: 56 LAEIFGCETAD 66


>gi|307710039|ref|ZP_07646484.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619224|gb|EFN98355.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 58

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          W+    +     +T   LA KAG+ P +           +    S +++ KI  A   +I
Sbjct: 2  WKKFKHLLIEKGMTQKALAEKAGISPNTIRNI-------KTERISFKNMCKIADALEVSI 54

Query: 70 CQ 71
           +
Sbjct: 55 DE 56


>gi|300925167|ref|ZP_07141076.1| helix-turn-helix protein [Escherichia coli MS 182-1]
 gi|300418685|gb|EFK01996.1| helix-turn-helix protein [Escherichia coli MS 182-1]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 26/129 (20%), Gaps = 9/129 (6%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
               +   +T   LA + G+         R      +R PS + I  +            
Sbjct: 47  RSRMKELGITQEKLAEELGMTQGGIGHWLRG-----SRHPSLDEIGVVFKYLGIDNVSFN 101

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV----FPTGNKWNTVGVPEIRSPHNG 129
                                +P                F  G+    V   +  S    
Sbjct: 102 HDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAF 161

Query: 130 IYAIQTQDT 138
              ++    
Sbjct: 162 WLEVEGNSM 170


>gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC
          29098]
 gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC
          29098]
          Length = 183

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 1  MT-SFSHKKI--WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          MT   +  +I   + I R  +   +T   LA + G+   S  K +          P  + 
Sbjct: 1  MTEKMTEGRIRLGQEILRRRKAMGMTQEELASRMGVSRQSVAKWETGQS-----SPDIDR 55

Query: 58 IFKILAATNETICQ 71
          +  +      ++ +
Sbjct: 56 LSLLRDVLQTSLDE 69


>gi|307154063|ref|YP_003889447.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306984291|gb|ADN16172.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 82

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 17/47 (36%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
              K+ + I  + +   LT    A   G+  T+ N+ ++       
Sbjct: 10 LEQPKVGQLIRALRQEMQLTQEQFAGMVGVVFTTVNRWEKGHANPSP 56


>gi|167841007|ref|ZP_02467691.1| DNA-binding protein [Burkholderia thailandensis MSMB43]
          Length = 194

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A
Sbjct: 9   TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 63

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              ++ +L   P +          +IP L    +         +   G  +    +
Sbjct: 64  LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 118


>gi|153820180|ref|ZP_01972847.1| protein UmuD [Vibrio cholerae NCTC 8457]
 gi|126509273|gb|EAZ71867.1| protein UmuD [Vibrio cholerae NCTC 8457]
          Length = 135

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                  +    +     K    SM  +    GD+LI++  ++    D ++     G+ V
Sbjct: 26  SIDLDGLLIQHPSATFIGKASGDSMQGVGIFDGDLLIVDRHLEAMNHDVIVANFN-GEFV 84

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE 208
            K+L  RR     L+S N       + 
Sbjct: 85  CKILDIRRR---LLLSANEKMQPVAIH 108


>gi|254251470|ref|ZP_04944788.1| hypothetical protein BDAG_00657 [Burkholderia dolosa AUO158]
 gi|124894079|gb|EAY67959.1| hypothetical protein BDAG_00657 [Burkholderia dolosa AUO158]
          Length = 259

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 14/170 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + KI AA   +
Sbjct: 67  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 121

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      ++   ++      S         P   +++ + +  + +   
Sbjct: 122 VAAFLRRHAVNGFEHLAADRASRVVSSNGRFSSRALYPEGEPAAAEFHELRIAPLHTEPG 181

Query: 129 GIYAIQTQDTRHKTQDTSMLPL------YRKGDILILNSAIQV---NCGD 169
              A  T      ++ T  + +         GD ++ ++       N GD
Sbjct: 182 TPRAPGTTVNLVVSEGTLEISVHDRRQLLATGDAIVFDADQPYSLRNPGD 231


>gi|24379248|ref|NP_721203.1| hypothetical protein SMU.790 [Streptococcus mutans UA159]
 gi|24377163|gb|AAN58509.1|AE014920_7 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 79

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   I  + +   +T   LA K  +   + +K +R        +P   SI K+     
Sbjct: 4  QTLGMIISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLS-----FPDINSIPKLAEIFE 58

Query: 67 ETICQLLD 74
           ++  L+ 
Sbjct: 59 VSVDDLMQ 66


>gi|14324400|dbj|BAB59328.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 196

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       I E + +M +   ++   LAR  G+  +   + ++  I      P+   I  
Sbjct: 1  MRMEMMPNIDE-LRKMRKNLGISQKDLARVTGVSQSYIARLEKGTIN-----PTYSKIKA 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
          I     ++  +   +  +  +   +      
Sbjct: 55 IYEYLTKSSEKANTIALTCDKIMTRNVVVCR 85


>gi|15607615|ref|NP_214988.1| transcriptional regulatory protein [Mycobacterium tuberculosis
           H37Rv]
 gi|15839863|ref|NP_334900.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis
           CDC1551]
 gi|31791654|ref|NP_854147.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|121636390|ref|YP_976613.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148660241|ref|YP_001281764.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148821673|ref|YP_001286427.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167970705|ref|ZP_02552982.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215402227|ref|ZP_03414408.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|215409992|ref|ZP_03418800.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215425701|ref|ZP_03423620.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|215444577|ref|ZP_03431329.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|218752108|ref|ZP_03530904.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|219556293|ref|ZP_03535369.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|224988862|ref|YP_002643549.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253797402|ref|YP_003030403.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254230822|ref|ZP_04924149.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C]
 gi|254363439|ref|ZP_04979485.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549422|ref|ZP_05139869.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185342|ref|ZP_05762816.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|260199473|ref|ZP_05766964.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|260203626|ref|ZP_05771117.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289441856|ref|ZP_06431600.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289446017|ref|ZP_06435761.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289552725|ref|ZP_06441935.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289568393|ref|ZP_06448620.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289573061|ref|ZP_06453288.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289744172|ref|ZP_06503550.1| transcriptional regulatory protein [Mycobacterium tuberculosis
           02_1987]
 gi|289748964|ref|ZP_06508342.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289756549|ref|ZP_06515927.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|289760592|ref|ZP_06519970.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294995981|ref|ZP_06801672.1| transcriptional regulatory protein [Mycobacterium tuberculosis 210]
 gi|297632959|ref|ZP_06950739.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN
           4207]
 gi|297729934|ref|ZP_06959052.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN
           R506]
 gi|298523952|ref|ZP_07011361.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis
           94_M4241A]
 gi|306774572|ref|ZP_07412909.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306779320|ref|ZP_07417657.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306783110|ref|ZP_07421432.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306787478|ref|ZP_07425800.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306792029|ref|ZP_07430331.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306796215|ref|ZP_07434517.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306802073|ref|ZP_07438741.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306806284|ref|ZP_07442952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306966480|ref|ZP_07479141.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|306970676|ref|ZP_07483337.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307078400|ref|ZP_07487570.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307082959|ref|ZP_07492072.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|313657263|ref|ZP_07814143.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN
           V2475]
 gi|81669532|sp|O53759|Y474_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator
           Rv0474/MT0491
 gi|2909550|emb|CAA17429.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13879998|gb|AAK44714.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis
           CDC1551]
 gi|31617240|emb|CAD93347.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
           AF2122/97]
 gi|121492037|emb|CAL70500.1| Probable transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124599881|gb|EAY58891.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C]
 gi|134148953|gb|EBA40998.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504393|gb|ABQ72202.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148720200|gb|ABR04825.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|224771975|dbj|BAH24781.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253318905|gb|ACT23508.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289414775|gb|EFD12015.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289418975|gb|EFD16176.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289437357|gb|EFD19850.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289537492|gb|EFD42070.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289542146|gb|EFD45795.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289684700|gb|EFD52188.1| transcriptional regulatory protein [Mycobacterium tuberculosis
           02_1987]
 gi|289689551|gb|EFD56980.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289708098|gb|EFD72114.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289712113|gb|EFD76125.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|298493746|gb|EFI29040.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216919|gb|EFO76318.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308327764|gb|EFP16615.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308332127|gb|EFP20978.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308335853|gb|EFP24704.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308339516|gb|EFP28367.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308343384|gb|EFP32235.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308347293|gb|EFP36144.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308351223|gb|EFP40074.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308355876|gb|EFP44727.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308359797|gb|EFP48648.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308363736|gb|EFP52587.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308367393|gb|EFP56244.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323721149|gb|EGB30211.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326902301|gb|EGE49234.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328457188|gb|AEB02611.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 140

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E  +++   LA ++G+     ++ +R       R PS + + +I  A   
Sbjct: 21  DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERG-----LRKPSADVLSQIAKALRV 75

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +   L         +   + ++  +    
Sbjct: 76  SAEVLYVRAGILEPSETSQVRDAIITDTA 104


>gi|327463750|gb|EGF10066.1| transcriptional regulator [Streptococcus sanguinis SK1057]
          Length = 72

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|320102695|ref|YP_004178286.1| helix-turn-helix domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319749977|gb|ADV61737.1| helix-turn-helix domain protein [Isosphaera pallida ATCC 43644]
          Length = 222

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 6/65 (9%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +++ + +  +    N +    ++  G+  +  ++ +R         P+   +F+I     
Sbjct: 42  ERLRQRVKTLRTERNWSLEEFSKACGVSRSMLSQIERGEAN-----PTLAVMFRIAQVFG 96

Query: 67  ETICQ 71
            ++ +
Sbjct: 97  MSLGE 101


>gi|317506633|ref|ZP_07964424.1| hypothetical protein HMPREF9336_00794 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316255065|gb|EFV14344.1| hypothetical protein HMPREF9336_00794 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 149

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            + R+ ++   + + L R A + P +    +    EG    P  + + ++ AA   ++ 
Sbjct: 12 HRLTRLRDKEGWSEAELGRLARVSPQAIRNWESGLTEG----PQVDKLARVAAALGASMA 67

Query: 71 Q 71
           
Sbjct: 68 D 68


>gi|226305059|ref|YP_002765017.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226184174|dbj|BAH32278.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
           PR4]
          Length = 470

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++     L+ + LA+   +  +  N+ +        R  +   + +I       
Sbjct: 6   VGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      +                P
Sbjct: 61  TTFFSPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVSTHP 102


>gi|182418649|ref|ZP_02949926.1| DNA-binding protein [Clostridium butyricum 5521]
 gi|237668530|ref|ZP_04528514.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377511|gb|EDT75065.1| DNA-binding protein [Clostridium butyricum 5521]
 gi|237656878|gb|EEP54434.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 179

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E I  +     LT   LA +  L     ++ +          PS  ++  IL     
Sbjct: 2  QIGEKIRILRMEKQLTQEELANRCELSKGFISQVENDLT-----SPSIATLIDILEILGT 56

Query: 68 TICQLL 73
           +    
Sbjct: 57 NLPDFF 62


>gi|154500021|ref|ZP_02038059.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC
          29799]
 gi|150271619|gb|EDM98876.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC
          29799]
          Length = 296

 Score = 44.4 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I    +   ++   +A K  +   + +K +          P  + + ++    N +
Sbjct: 4  IDKNIKHFRKAKGMSQEEMAVKLNVVRQTVSKWENGLSV-----PDADVLIRMAELLNVS 58

Query: 69 ICQ 71
          + Q
Sbjct: 59 VSQ 61


>gi|295104256|emb|CBL01800.1| Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3]
          Length = 110

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   IDR       +   LA  +GL  ++ +  +R  ++     P+  SI KI      
Sbjct: 9  DILGRIDRERLARGWSEYTLAENSGLTQSTLSTWRRRNLQ-----PNVTSIEKICHGLGI 63

Query: 68 TICQLLDLPFSDGR 81
          T+ Q  +   +   
Sbjct: 64 TLSQFFEEDAAIHH 77


>gi|253579354|ref|ZP_04856624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849452|gb|EES77412.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 298

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI + I    +   +T   LA K G+   S +K +R         P      ++ +    
Sbjct: 5  KIGKYIAGKRKSLGMTQKQLAEKLGMSDKSVSKWERGVC-----LPDVSVYKELCSILGI 59

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          ++ + L           +K +   +   
Sbjct: 60 SLNEFLAGEDIAQENMIQKSETNIIEVI 87


>gi|225406864|ref|ZP_03761053.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme
          DSM 15981]
 gi|225042620|gb|EEG52866.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme
          DSM 15981]
          Length = 63

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 15/36 (41%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I    ++  L+   LA++ G+   + N  +    + 
Sbjct: 5  IRDKRKQQGLSQEELAKRCGVSRQTVNAIENDKYDP 40


>gi|225017527|ref|ZP_03706719.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum
          DSM 5476]
 gi|224949677|gb|EEG30886.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum
          DSM 5476]
          Length = 83

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + E H+LT + LAR   +   +++  +R       R    E + +       ++ 
Sbjct: 4  NRIRDLREDHDLTQAELARMLSVSRQAYSGYERGV-----RSIPFEILCQFALFYGTSLD 58

Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92
           L           + K+K   +
Sbjct: 59 YLTGRTDVKAPYPKPKQKNFVV 80


>gi|106879454|emb|CAJ20007.1| putative DNA binding regulatory protein [Streptomyces cattleya]
          Length = 185

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 45/158 (28%), Gaps = 5/158 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+ E   L+ + L+R +G+   + +  +           S  ++   L   +  
Sbjct: 11  VGAQVRRLREFRGLSVAELSRLSGVSRATLSMLESGRGNPTIETVSAIAVALRLPLGDLL 70

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +      P     T   +     LL    +G            G        P  R    
Sbjct: 71  VDPTPPEPVLRPGTPRPQTSRQDLLDRIGAGGHSEIWRLRL-CGAGRRVDSPPHTRGTLE 129

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            + A++ +            P+       ++  A + +
Sbjct: 130 RVVALRGRLRLGPVD----RPVVLATGDFVVFPADEPH 163


>gi|254247276|ref|ZP_04940597.1| hypothetical protein BCPG_02063 [Burkholderia cenocepacia PC184]
 gi|124872052|gb|EAY63768.1| hypothetical protein BCPG_02063 [Burkholderia cenocepacia PC184]
          Length = 228

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 6/135 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + KI AA   +
Sbjct: 35  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+   ++      S         P                  
Sbjct: 90  VAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPA-AAEFHELRIAPLHTEP 148

Query: 129 GIYAIQTQDTRHKTQ 143
           G              
Sbjct: 149 GARRAPGTTVNLVVS 163


>gi|116512822|ref|YP_811729.1| XRE family transcriptional regulator [Lactococcus lactis subsp.
          cremoris SK11]
 gi|116108476|gb|ABJ73616.1| Transcriptional regulator, xre family [Lactococcus lactis subsp.
          cremoris SK11]
          Length = 175

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I    +   LT  GLA   G+  ++ +  ++       R P  + +F++  A   +I + 
Sbjct: 14 IKEFRKNKKLTQQGLADLVGVKNSAISNYEQGT-----RIPKRDFLFRVANALGVSIDEF 68

Query: 73 LDLPFSDGRTTEKKEKE 89
            +   +  +T  +  +
Sbjct: 69 FPIQNEETSSTLSEINK 85


>gi|333025217|ref|ZP_08453281.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|332745069|gb|EGJ75510.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 495

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 4/105 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  + ER  L+   LA++  L  ++ ++            P+     ++         
Sbjct: 12  ARLKELKERSGLSYGQLAKRLHLSTSTLHRYCNGDALPAEFTPAD----RLARLCGADRA 67

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           +L+DL          +           +           P G   
Sbjct: 68  ELMDLHRRWLLADAARAAAKEQQEAVRAEPPRPAPVEPVPEGAAE 112


>gi|332365009|gb|EGJ42774.1| transcriptional regulator [Streptococcus sanguinis SK355]
          Length = 74

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QIFN 59


>gi|325262674|ref|ZP_08129410.1| DNA-binding protein [Clostridium sp. D5]
 gi|324031768|gb|EGB93047.1| DNA-binding protein [Clostridium sp. D5]
          Length = 545

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 2/101 (1%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I R  +   LT   LA K G+   + +K +  G  G       E++  +L  + + +
Sbjct: 6   GQFIARRRKAIGLTQKELAEKLGVTNKAVSKWETGG--GMPDVSVLETLAGVLEVSVDEL 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
            +             +  + +           G     V  
Sbjct: 64  LKGERQADQTELMIPQPVQRMKRGRLIAGAVTGILALAVLA 104


>gi|323350743|ref|ZP_08086403.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|322123023|gb|EFX94722.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|324991948|gb|EGC23871.1| transcriptional regulator [Streptococcus sanguinis SK405]
 gi|325686508|gb|EGD28536.1| transcriptional regulator [Streptococcus sanguinis SK72]
 gi|325689266|gb|EGD31272.1| transcriptional regulator [Streptococcus sanguinis SK115]
          Length = 74

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|313885596|ref|ZP_07819346.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619326|gb|EFR30765.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 63

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          W+ I+R+ +   +TP  LA+ A +        +    +GR +  + E  FK+  A +  +
Sbjct: 2  WKVIERLMKEKGMTPYSLAKAASITKQGLYALR----DGRTKTITLEYAFKVADALDVDV 57

Query: 70 CQL 72
           + 
Sbjct: 58 NEF 60


>gi|310658350|ref|YP_003936071.1| Xre family transcriptional regulator [Clostridium sticklandii DSM
          519]
 gi|308825128|emb|CBH21166.1| Transcriptional regulator, XRE family [Clostridium sticklandii]
          Length = 328

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + ++   +   LA K  +   S +K +     G    P  + I ++      +
Sbjct: 3  LADKIILLRKKSGWSQEELAEKLNVSRQSISKWE-----GAQSVPGMDKILQLSEIFGVS 57


>gi|300721571|ref|YP_003710846.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
          19061]
 gi|297628063|emb|CBJ88614.1| Predicted transcriptional regulator [Xenorhabdus nematophila ATCC
          19061]
          Length = 92

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/64 (12%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +++ E +        LT   +A+  G++P++ ++ +    +      S  ++ +   A  
Sbjct: 30 ERLRETLQAWRRHAGLTRQEIAKIMGVNPSTVSRMESNVDKA-----SVNTLARYARACG 84

Query: 67 ETIC 70
              
Sbjct: 85 IENP 88


>gi|297156337|gb|ADI06049.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 218

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  R  LT    AR AGL P   ++ +        R PS   +  +      T
Sbjct: 24  VAPRLRDLRRRSGLTLEAAARLAGLSPAHLSRLETA-----RRQPSLPMLLALARTYGTT 78

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLL 93
           +  LL     +     + ++     
Sbjct: 79  VSDLLGEVSPERDPILRADRTAAWE 103


>gi|295134500|ref|YP_003585176.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda
           SM-A87]
 gi|294982515|gb|ADF52980.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda
           SM-A87]
          Length = 134

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 6/119 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S +   I   I R+ E   +    LA + G+   S ++ ++            E + K
Sbjct: 1   MNSTATPHIGRKISRIRELRGMKQETLAEELGISQQSVSQMEQNEN------LEDEKLDK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +  A   +   + +               +        G        +    +K   + 
Sbjct: 55  VAKALGVSKEAIKNFSEEAILNIIGNTYHVDNSSAVNYGCTFNPIDKIIEQSDKIEELY 113


>gi|293364378|ref|ZP_06611104.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307702656|ref|ZP_07639608.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
 gi|291317224|gb|EFE57651.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307623772|gb|EFO02757.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
          Length = 165

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +  + +    +   LA +  +   S +K +   +      P  E I ++      
Sbjct: 2   KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           T   LL    S+  + E   +E    Y+    S G +     
Sbjct: 57  TTDYLLLDENSEKGSIEVILEEDKDKYYKEVKSFGLWQVIYI 98


>gi|305682108|ref|ZP_07404912.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266]
 gi|305658581|gb|EFM48084.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266]
          Length = 274

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    E   LT S LA++ G   +  +K +        R    E + +I  +   +
Sbjct: 10 IAHVIAGFREEAALTQSQLAQRLGKPQSFISKLESGE-----RSLRVEELPQIAQSLGVS 64

Query: 69 I 69
           
Sbjct: 65 P 65


>gi|257065249|ref|YP_003144921.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792902|gb|ACV23572.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 194

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I  +  R  ++   LA+   +   + +  +         +P  +S+  I    N 
Sbjct: 2  EVGKTIKDLRTRSGMSQEELAKNVFVSRQTVSSWENEKS-----YPDVQSLALIAELFNT 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|229490209|ref|ZP_04384056.1| DNA-binding protein [Rhodococcus erythropolis SK121]
 gi|229322957|gb|EEN88731.1| DNA-binding protein [Rhodococcus erythropolis SK121]
          Length = 470

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++     L+ + LA+   +  +  N+ +        R  +   + +I       
Sbjct: 6   VGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDV-----RPLTVPVLLRISEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      +                P
Sbjct: 61  TTFFSPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVSTHP 102


>gi|269129041|ref|YP_003302411.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268313999|gb|ACZ00374.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM
           43183]
          Length = 247

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 50/198 (25%), Gaps = 14/198 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +        LT + LA   G+DP +  +    G     R     +    +  T     
Sbjct: 4   ERLRAALLERGLTAAALAEAIGVDPKTVERWITKGRTPYRRHRFAVASQLGVDETYLWPE 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     +    +E           P    G  F       G            +    I
Sbjct: 64  ALSRQQMASASESEIVTVYPHRWSVPRDVWGRLFGKAKREIGVLVYAGLFLSEDAGVQKI 123

Query: 131 YAIQTQDTRHKTQ---DTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
           +A + +    + +        P        +         GD +  K R   ++ + L +
Sbjct: 124 FAEKARA-GVRVRILLGDPDSPH-------VAERGADEGVGDAMAAKIRNAMVMYRPLRA 175

Query: 188 RRGRSIDLMS---LNCCY 202
                  L S    N  Y
Sbjct: 176 IESVEFRLHSTVLYNSIY 193


>gi|227500241|ref|ZP_03930310.1| bifunctional S24 family peptidase/transcriptional regulator
           [Anaerococcus tetradius ATCC 35098]
 gi|227217631|gb|EEI82940.1| bifunctional S24 family peptidase/transcriptional regulator
           [Anaerococcus tetradius ATCC 35098]
          Length = 174

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  + +  N+T   L+   G+ P+S +   R   E +      + I   L  +   + 
Sbjct: 11  NRLKDLLQEKNMTQKELSNLTGITPSSISDWLRGKYEAK--QDKIDIIATALNVSQAYLM 68

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
                  +  +   K+      L          F
Sbjct: 69  GYDVPKVNHIKMFAKESNSNRNLTNNQENIISLF 102


>gi|210613657|ref|ZP_03289816.1| hypothetical protein CLONEX_02023 [Clostridium nexile DSM 1787]
 gi|210151087|gb|EEA82095.1| hypothetical protein CLONEX_02023 [Clostridium nexile DSM 1787]
          Length = 98

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                I + +  +     +T + LA  +G+  ++ N   R       + P  +++ KI 
Sbjct: 19 MTYSDAIIKRLTDLCVERGITTNKLATLSGITQSTLNSMMRGET----KNPKLKTLRKIA 74

Query: 63 AATNETICQLLDLPFSDGRTTEKK 86
             N T+ +LLD P  +    E +
Sbjct: 75 MGFNMTVSELLDFPEMNEMEFEDE 98


>gi|183597904|ref|ZP_02959397.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC
          25827]
 gi|188022666|gb|EDU60706.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC
          25827]
          Length = 119

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I R+ ++  LT   LA+K  +     ++ +R          + +++F IL     +
Sbjct: 16 VGKEIFRLRKKRGLTGKQLAKKLNVSQQQISRYERGVCN-----INVDTLFVILHELGCS 70


>gi|163813865|ref|ZP_02205259.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC
          27759]
 gi|158450735|gb|EDP27730.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC
          27759]
          Length = 351

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E I    +   LT   +A   G+   + NK ++        +P    +  +      
Sbjct: 2  RIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNT-----YPDISLLPALARLLKI 56

Query: 68 TICQLLDLPF 77
           + +L     
Sbjct: 57 DMNELFSFHE 66


>gi|188580819|ref|YP_001924264.1| XRE family transcriptional regulator [Methylobacterium populi
          BJ001]
 gi|179344317|gb|ACB79729.1| transcriptional regulator, XRE family [Methylobacterium populi
          BJ001]
          Length = 135

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + E I  + +   L+ + L    G+      K +R     R      + I ++L   
Sbjct: 18 VGERIVALRKARGLSQAALGAAVGVTFQQVQKYERGTN--RVGAGRLQEIARLLEVP 72


>gi|21325693|dbj|BAC00314.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
          Length = 104

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S K + + + +  ++  +T   LA  +G+     +K +R         P+  ++  + + 
Sbjct: 38 SRKALGQKLVKARKQRGVTQVQLAEASGVQQAEISKIERGLAN-----PTFSTLESLASH 92

Query: 65 TN 66
            
Sbjct: 93 LG 94


>gi|56476257|ref|YP_157846.1| hypothetical protein ebD35 [Aromatoleum aromaticum EbN1]
 gi|56312300|emb|CAI06945.1| hypothetical protein, potentially DNA-binding [Aromatoleum
          aromaticum EbN1]
          Length = 89

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          KI   +  M +   LT   +AR AG+  TS ++ +     GR        + ++ A   
Sbjct: 11 KIGSTVREMRQARGLTQQEVARLAGVGRTSLSQLEN----GRIGDIGIRKLLRVCAVLG 65


>gi|19554107|ref|NP_602109.1| hypothetical protein NCgl2819 [Corynebacterium glutamicum ATCC
           13032]
 gi|62391757|ref|YP_227159.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|41327099|emb|CAF20943.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC
           13032]
          Length = 127

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           S K + + + +  ++  +T   LA  +G+     +K +R         P+  ++  + + 
Sbjct: 61  SRKALGQKLVKARKQRGVTQVQLAEASGVQQAEISKIERGLAN-----PTFSTLESLASH 115

Query: 65  TN 66
             
Sbjct: 116 LG 117


>gi|317480761|ref|ZP_07939847.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          4_1_36]
 gi|316903102|gb|EFV24970.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          4_1_36]
          Length = 161

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++I   +  + ++ N+T   LA   G++  +  K ++          S + + K+ +A 
Sbjct: 16 RERIGSRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYN-----VSIDILSKVTSAL 70

Query: 66 NE 67
            
Sbjct: 71 GF 72


>gi|306846135|ref|ZP_07478697.1| XRE family transcriptional regulator [Brucella sp. BO1]
 gi|306273386|gb|EFM55247.1| XRE family transcriptional regulator [Brucella sp. BO1]
          Length = 182

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+   LA++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|294141035|ref|YP_003557013.1| UmuD protein [Shewanella violacea DSS12]
 gi|293327504|dbj|BAJ02235.1| UmuD protein [Shewanella violacea DSS12]
          Length = 147

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 12/127 (9%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
                               P         S    +    +     +    SM  +    
Sbjct: 1   MTMMKVIPISASAGITGFESPATDYKQLPLSLDELLIQHPSATFIGQASGCSMQNVGIFD 60

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDI 212
           GDILI++  ++V   D ++     G+ V K++ ++R     L+S N  +    +      
Sbjct: 61  GDILIVDRHVKVQDQDVIV-ANYNGNFVCKIIDTKRR---MLLSANDEHQPVVIHEYDQF 116

Query: 213 EWIARIL 219
                ++
Sbjct: 117 SVEGIVV 123


>gi|253579257|ref|ZP_04856527.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849355|gb|EES77315.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 177

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + I    E    +   LA  +G++  +  K +        R P  + + KI  A  
Sbjct: 2  VGKKIRAFREFRGYSQIQLAELSGINVGTIRKYELGI-----RNPKPDQLEKIATALG 54


>gi|206602565|gb|EDZ39046.1| ParB-like partition protein [Leptospirillum sp. Group II '5-way
           CG']
          Length = 313

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 13/182 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I  AID + +R+ LT    A+  G   +  ++             S E+  K L     
Sbjct: 127 EIARAIDEIVKRYGLTQETCAKALGKSRSYVSRHLSLL-------MSDETTMKALETGMI 179

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              + + L         ++  +  L    P       +                   +  
Sbjct: 180 RDPEAVTLMNRMESGVRQEFLDRALSTNTPITVRAVREELERTESPGRREFSGSFGAAEP 239

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              Y ++        +  S  P     +   +  +      D +++      +  K+L  
Sbjct: 240 TLPYPVEES------RPPSSAPELSIDETREVGKSRPPEAKDPVVMIDLPLGVWKKLLGR 293

Query: 188 RR 189
             
Sbjct: 294 LG 295


>gi|206973030|ref|ZP_03233952.1| transcriptional regulator Xre [Bacillus cereus AH1134]
 gi|206731914|gb|EDZ49114.1| transcriptional regulator Xre [Bacillus cereus AH1134]
          Length = 108

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  +T   LA    L  ++    +R       R P   ++ +I    N +
Sbjct: 5  GNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58


>gi|167749537|ref|ZP_02421664.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702]
 gi|167657461|gb|EDS01591.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702]
          Length = 380

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+ E + +   +  LT   LA   G+   + ++ +         +P    +  I +    
Sbjct: 15 KLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGST-----YPDITLLPTIASYFEI 69

Query: 68 TICQLLDLPFSDGRTT 83
          T+ +L+ +        
Sbjct: 70 TLDELMGMENWRSEEQ 85


>gi|149373125|ref|ZP_01892013.1| hypothetical protein SCB49_14705 [unidentified eubacterium SCB49]
 gi|149354273|gb|EDM42842.1| hypothetical protein SCB49_14705 [unidentified eubacterium SCB49]
          Length = 110

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIF 59
          MTS       E I  +   + LT + LA K  LD  + +K +    +    R P    IF
Sbjct: 1  MTSLMKTTFGEYIRLLRNENELTLTQLAAKLNLDSANLSKIENGKRDFDEKRLPKLAKIF 60

Query: 60 KI 61
          K+
Sbjct: 61 KL 62


>gi|145596208|ref|YP_001160505.1| peptidase S24, S26A and S26B [Salinispora tropica CNB-440]
 gi|145305545|gb|ABP56127.1| peptidase S24, S26A and S26B [Salinispora tropica CNB-440]
          Length = 133

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRL--LIKPRTGDIVAKVLISRRGRSIDL 195
                  SM+P  R GD +++    + +  GD +  + + R   +V K  +        L
Sbjct: 35  AVLVTGPSMVPTLRHGDAVLVRRGDRGIRAGDVVVAVFRSRPDLLVVKRAVGPIAEGWWL 94

Query: 196 MSLNCCYPVDTVEMSDIEWIARIL 219
           +  N     D+      +   R++
Sbjct: 95  VGDNPLITDDSRAYGGADIWGRVV 118


>gi|39841578|gb|AAR31194.1| unknown [Burkholderia pseudomallei 1026b]
          Length = 67

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            AI  +     LT + +A + G   ++ ++ +      +   PS  ++ K  AA  
Sbjct: 4  LRAILAIRHEAGLTQAQVAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAAFG 59


>gi|76810570|ref|YP_331534.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|167721748|ref|ZP_02404984.1| putative DNA-binding protein [Burkholderia pseudomallei DM98]
 gi|167740723|ref|ZP_02413497.1| putative DNA-binding protein [Burkholderia pseudomallei 14]
 gi|167847816|ref|ZP_02473324.1| putative DNA-binding protein [Burkholderia pseudomallei B7210]
 gi|167900133|ref|ZP_02487534.1| putative DNA-binding protein [Burkholderia pseudomallei 7894]
 gi|167904782|ref|ZP_02491987.1| putative DNA-binding protein [Burkholderia pseudomallei NCTC
          13177]
 gi|167913061|ref|ZP_02500152.1| putative DNA-binding protein [Burkholderia pseudomallei 112]
 gi|167920999|ref|ZP_02508090.1| putative DNA-binding protein [Burkholderia pseudomallei BCC215]
 gi|76580023|gb|ABA49498.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
          Length = 105

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            AI  +     LT + +A + G   ++ ++ +      +   PS  ++ K  AA  
Sbjct: 42 LRAILAIRHEAGLTQAQVAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAAFG 97


>gi|83859650|ref|ZP_00953170.1| probable transcriptional regulator [Oceanicaulis alexandrii
          HTCC2633]
 gi|83852009|gb|EAP89863.1| probable transcriptional regulator [Oceanicaulis alexandrii
          HTCC2633]
          Length = 66

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           AI  +      + + LA K  +   +    +    +     PS    F+I     
Sbjct: 3  NAIKELRADRGWSQAALADKLDVSRQTVISIENGKYD-----PSLPLAFRIARVFG 53


>gi|315926028|ref|ZP_07922230.1| conserved hypothetical protein [Pseudoramibacter alactolyticus
          ATCC 23263]
 gi|315620668|gb|EFV00647.1| conserved hypothetical protein [Pseudoramibacter alactolyticus
          ATCC 23263]
          Length = 323

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + +R   +   LA + G+   S +K +     G    P    + K+      +
Sbjct: 10 LRKRAEWSQEELAEQMGVSRQSISKWE-----GAQSIPDMNRLLKLSQIFGVS 57


>gi|317121314|ref|YP_004101317.1| XRE family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315591294|gb|ADU50590.1| transcriptional regulator of molybdate metabolism, XRE family
           [Thermaerobacter marianensis DSM 12885]
          Length = 464

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 11/106 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +     R  L+   LA +AG+   + +  +          PS     ++  A    
Sbjct: 28  VVNGLRAARLRLGLSQQELAARAGVTRQAVSAIEGGQA-----APSLGVALRLARALG-- 80

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
                 +         + E E+ L+                P G  
Sbjct: 81  ----CRVEDLFWLDDPEPEVEVELVGTGAEDPEPQGAPASRPAGPG 122


>gi|308180192|ref|YP_003924320.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|308045683|gb|ADN98226.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 125

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 1  MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M        ++ + I + A+++ LT + +A  AGL  ++    K+         PS  ++
Sbjct: 1  MAFLKIDNGELLKNIRQFAKKNGLTLAEVATLAGLSASAIYSWKKHT-------PSVGTL 53

Query: 59 FKILAATNETI 69
           ++      + 
Sbjct: 54 KEVAQVLGTSY 64


>gi|295108966|emb|CBL22919.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 351

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E I    +   LT   +A   G+   + NK ++        +P    +  +      
Sbjct: 2  RIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNT-----YPDISLLPALARLLKI 56

Query: 68 TICQLLDLPF 77
           + +L     
Sbjct: 57 DMNELFSFHE 66


>gi|224372182|ref|YP_002606554.1| helix-turn-helix protein [Nautilia profundicola AmH]
 gi|223588476|gb|ACM92212.1| helix-turn-helix protein [Nautilia profundicola AmH]
          Length = 272

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 45/180 (25%), Gaps = 23/180 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I    E   L  S LA +AG+  ++  K +          P+  +I+ I       
Sbjct: 3   LGEKIKFFRENKGLNLSELASRAGVAKSTLFKIEENKTN-----PTINTIWAIAEVLGVP 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             +L+      G        E    +     +                 +  P       
Sbjct: 58  FGELVGEGEIKGEGVSVVLIEKTDEFESYKMNLKTSA----------EYIAKPHFAGAVE 107

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-----CGDRLLIKPRTGDIVAK 183
            IY ++      K      +     G+ +   +              ++      +   K
Sbjct: 108 RIYVLKGD---VKVGSVDDIHTLHSGETVEFEADKTHIYSALTPSTLIVTIYYPKEKYFK 164


>gi|188492331|ref|ZP_02999601.1| bacteriophage CI repressor protein [Escherichia coli 53638]
 gi|188487530|gb|EDU62633.1| bacteriophage CI repressor protein [Escherichia coli 53638]
          Length = 129

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 9/74 (12%)

Query: 1  MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          M     +    + E +D ++++H+L+ S LAR AG+  +S N  K+ G   +      +S
Sbjct: 1  MDMRKKQYDTPLAERLDTISQQHHLSGSDLARIAGVGRSSVNAWKKRGTISK------DS 54

Query: 58 IFKILAATNETICQ 71
            KI  ATN ++  
Sbjct: 55 AAKIAEATNVSLSW 68


>gi|169631439|ref|YP_001705088.1| putative DNA-binding protein [Mycobacterium abscessus ATCC 19977]
 gi|169243406|emb|CAM64434.1| Putative DNA-binding protein [Mycobacterium abscessus]
          Length = 191

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 3  SFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             H  +    + R  +   L+   LAR++GL   + +K ++         P+ E++  +
Sbjct: 1  MTDHNTLVARNVRRYRQERALSLGDLARRSGLSKQTVSKIEQGVGN-----PTVETLALL 55

Query: 62 LAATNETIC 70
            A      
Sbjct: 56 GEALQVPPQ 64


>gi|168217416|ref|ZP_02643041.1| transcriptional regulator [Clostridium perfringens NCTC 8239]
 gi|182380504|gb|EDT77983.1| transcriptional regulator [Clostridium perfringens NCTC 8239]
          Length = 141

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  + +  N++   LA++  +   + +K +         +P  E++  +      +
Sbjct: 7  LKELRKEKNISQEQLAKELNISRQAISKWESGKA-----YPDIENLILLRKIFGVS 57


>gi|162148230|ref|YP_001602691.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786807|emb|CAP56390.1| putative transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 475

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I R+    +L+  GLA + G+ P+  N  +        R  +   + K+  A + 
Sbjct: 5   RIGYIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQ-----RSVTASLLIKLTRALDV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +I  L  +     R    +    PLL      +         P 
Sbjct: 60  SIEALSGVDEQRLRGLLHEALSDPLLGAHAVPAQEIAVLAAQPE 103


>gi|28378012|ref|NP_784904.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|254556218|ref|YP_003062635.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|28270846|emb|CAD63751.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|254045145|gb|ACT61938.1| transcription regulator [Lactobacillus plantarum JDM1]
          Length = 125

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 1  MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M        ++ + I + A+++ LT + +A  AGL  ++    K+         PS  ++
Sbjct: 1  MAFLKIDNGELLKNIRQFAKKNGLTLAEVATLAGLSASAIYSWKKHT-------PSVGTL 53

Query: 59 FKILAATNETI 69
           ++      + 
Sbjct: 54 KEVAQVLGTSY 64


>gi|152968233|ref|YP_001364017.1| XRE family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151362750|gb|ABS05753.1| transcriptional regulator, XRE family [Kineococcus radiotolerans
          SRS30216]
          Length = 70

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 2/55 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            I  +      T + LA    +   + N  +    +     P    + ++L   
Sbjct: 3  NRIRALRTERGWTQAALADLLDVSRQTVNALETGRYD--PSLPLAFRLARLLERP 55


>gi|307708478|ref|ZP_07644943.1| conserved domain protein [Streptococcus mitis NCTC 12261]
 gi|322376332|ref|ZP_08050825.1| conserved domain protein [Streptococcus sp. M334]
 gi|307615394|gb|EFN94602.1| conserved domain protein [Streptococcus mitis NCTC 12261]
 gi|321282139|gb|EFX59146.1| conserved domain protein [Streptococcus sp. M334]
          Length = 74

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESTGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|317055988|ref|YP_004104455.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315448257|gb|ADU21821.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 179

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/133 (9%), Positives = 34/133 (25%), Gaps = 9/133 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +       +LT + L+++ G+  +  ++        + R      + + L  T   + 
Sbjct: 6   ENLRTAMAERSLTQAELSKRTGISKSFISQYLSGKF--KPREDKLSILAQALGTTKGALL 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                      ++        +  F        +      T +      +   R   N  
Sbjct: 64  GYEST-----GSSSNDNDIHKVPVFSADDPSNQWGEEYANTEHGSYRFYI--CRDDKNRP 116

Query: 131 YAIQTQDTRHKTQ 143
           + +          
Sbjct: 117 FVMFGDYLLVSID 129


>gi|300694677|ref|YP_003750650.1| phage regulatory protein [Ralstonia solanacearum PSI07]
 gi|299076714|emb|CBJ36054.1| putative phage regulatory protein [Ralstonia solanacearum PSI07]
          Length = 118

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
          K++ E +    + H LT   LA   G+   +    +     GR R P
Sbjct: 10 KELGERVAEARKAHGLTQQQLAEALGIAQQTLAHYE----VGRARLP 52


>gi|228962123|ref|ZP_04123603.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228797559|gb|EEM44692.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 66

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
           +  + +   LT + LA    LD TS +K +        R
Sbjct: 7  FLREIRKEKGLTQNQLANLLDLDKTSISKYESGIHSPSLR 46


>gi|229056452|ref|ZP_04195865.1| hypothetical protein bcere0026_5790 [Bacillus cereus AH603]
 gi|228720926|gb|EEL72475.1| hypothetical protein bcere0026_5790 [Bacillus cereus AH603]
          Length = 75

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N T S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41


>gi|228919535|ref|ZP_04082899.1| hypothetical protein bthur0011_5600 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228977432|ref|ZP_04137826.1| hypothetical protein bthur0002_6470 [Bacillus thuringiensis
          Bt407]
 gi|229042544|ref|ZP_04190287.1| hypothetical protein bcere0027_6090 [Bacillus cereus AH676]
 gi|229077996|ref|ZP_04210605.1| hypothetical protein bcere0023_6860 [Bacillus cereus Rock4-2]
 gi|229165625|ref|ZP_04293398.1| hypothetical protein bcere0007_6060 [Bacillus cereus AH621]
 gi|228617860|gb|EEK74912.1| hypothetical protein bcere0007_6060 [Bacillus cereus AH621]
 gi|228705334|gb|EEL57711.1| hypothetical protein bcere0023_6860 [Bacillus cereus Rock4-2]
 gi|228726763|gb|EEL77977.1| hypothetical protein bcere0027_6090 [Bacillus cereus AH676]
 gi|228782256|gb|EEM30440.1| hypothetical protein bthur0002_6470 [Bacillus thuringiensis
          Bt407]
 gi|228840178|gb|EEM85455.1| hypothetical protein bthur0011_5600 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 75

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N T S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41


>gi|229177211|ref|ZP_04304599.1| hypothetical protein bcere0005_5860 [Bacillus cereus 172560W]
 gi|228606271|gb|EEK63704.1| hypothetical protein bcere0005_5860 [Bacillus cereus 172560W]
          Length = 75

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N T S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41


>gi|270284174|ref|ZP_05965683.2| putative helix-turn-helix protein [Bifidobacterium gallicum DSM
           20093]
 gi|270277253|gb|EFA23107.1| putative helix-turn-helix protein [Bifidobacterium gallicum DSM
           20093]
          Length = 365

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/99 (10%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 5   SHKKIW---EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           S ++I    + +  +    ++T   LA   G+   + +K +         +P  + +  I
Sbjct: 12  SGEEIMTFSDNLVSLRANRHMTQEQLAMLVGVSRQAISKWESGKA-----YPEMDKLLII 66

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                 ++  L+    +       +      +       
Sbjct: 67  CDLFTVSLDDLVLGDVTQPAPPAVRPTSQDTVLMHDGHD 105


>gi|239625412|ref|ZP_04668443.1| dna-binding protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519642|gb|EEQ59508.1| dna-binding protein [Clostridiales bacterium 1_7_47FAA]
          Length = 67

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 13/36 (36%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I    +   ++   LA K G+   + N  +    + 
Sbjct: 5  IRERRKERGISQEELAGKCGVSRQTVNAIENNKYDP 40


>gi|30018862|ref|NP_830493.1| PbsX family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|29894404|gb|AAP07694.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC
          14579]
          Length = 75

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N T S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41


>gi|332535943|ref|ZP_08411645.1| putative prophage repressor [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034677|gb|EGI71230.1| putative prophage repressor [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 70

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 7/65 (10%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 156 ILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEW 214
           ++ ++   +      ++          K LI   G    L + N  +P   + ++ +   
Sbjct: 1   MIFVDPEAEYIYSSYVVAHLDDNQATFKQLIIENGHKF-LKAANPNWPEQLIPINGNCTL 59

Query: 215 IARIL 219
           + +++
Sbjct: 60  VGKVI 64


>gi|325838540|ref|ZP_08166562.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|325490835|gb|EGC93137.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 110

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT      + E I +  +   L+   L+ K  +   +  K +           + ++I K
Sbjct: 1  MTM----TLGEKIKKYRQARGLSQEQLSEKLSVSRQAVTKWESDKGIPDIH--NLQAIAK 54

Query: 61 ILA 63
          +  
Sbjct: 55 LFN 57


>gi|325263097|ref|ZP_08129832.1| DNA-binding protein [Clostridium sp. D5]
 gi|324031490|gb|EGB92770.1| DNA-binding protein [Clostridium sp. D5]
          Length = 157

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 15/151 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP---------STESI 58
           +I E I ++ + +NLT   LA K  +   S +K +                    +T+ +
Sbjct: 2   EISEKILQLRKANNLTQEELAEKLNVSRQSISKWESGQTIPELEKLISLSSVFQVTTDYL 61

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP------SGSGGFFDSGVFPTG 112
            K       +I   +          E K+++   +          +              
Sbjct: 62  LKPSELDELSIKTEILEKKQQELEKESKKRKSSQICILSCAGIYLAAIVVVILIRNISQE 121

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQ 143
           N +     P I  P                +
Sbjct: 122 NDFLWNIFPGITLPLIAFLLATAISIWVCVR 152


>gi|322412102|gb|EFY03010.1| Transcriptional regulator, Cro/CI family protein [Streptococcus
          dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 71

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +  R  +  + +A+ AG+   + +  +R         PS     KI    +E 
Sbjct: 5  LKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSIVIAMKIAKVFHEP 59

Query: 69 ICQLLDLPF 77
          + ++  L  
Sbjct: 60 VEEVFRLVE 68


>gi|320326809|gb|EFW82846.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330882609|gb|EGH16758.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 123

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +  +L+ + LA   G D     + +R         PS E + K+  A   +
Sbjct: 18 VGAKIKVLRKMADLSQAELAALIGCDAPIIGRYERGI-----HMPSIEQLIKLSTALKVS 72

Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90
            +LL     + R      +  
Sbjct: 73 PAELLPNQDDEIRQQLISLRSQ 94


>gi|310659741|ref|YP_003937462.1| BcrR protein [Clostridium sticklandii DSM 519]
 gi|308826519|emb|CBH22557.1| BcrR [Clostridium sticklandii]
          Length = 203

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E + ++ +++N T   LA +  +  T+ +K +         +PS +S+  I A    
Sbjct: 2  ELGEKLQQLRKQNNWTQEQLAEQLYISRTAVSKWESGKG-----YPSIDSLKNISALFKI 56

Query: 68 TICQ 71
          +I  
Sbjct: 57 SIDD 60


>gi|304439386|ref|ZP_07399298.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|304372168|gb|EFM25762.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
          Length = 67

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I +  +   L+   LA   GL   S    +   I      P+ E+ +KI     + 
Sbjct: 5  IENKIAQFRKEKGLSQHKLAEAVGLKRRSIMAYESNTI-----SPTLETAYKICKVLGKD 59

Query: 69 ICQLLDLP 76
          + ++    
Sbjct: 60 MTEVFIFK 67


>gi|295093073|emb|CBK82164.1| Helix-turn-helix. [Coprococcus sp. ART55/1]
          Length = 45

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
              KI   I    +R   T   L+ K G+   + +K +R   
Sbjct: 1  MDQIKIGRFIADERKRKGYTQKQLSEKLGISDKTISKWERGVS 43


>gi|307726765|ref|YP_003909978.1| helix-turn-helix domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307587290|gb|ADN60687.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003]
          Length = 212

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     +T   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 34  RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  L     +          EIP L    +         +   G  +    +
Sbjct: 89  SLDSLFAAQKTPEAIAVAGPHEIPTLSGHDAKYQLRVWGPIELAGK-FEWYEL 140


>gi|270269109|gb|ACZ66101.1| Signal peptidase I [Staphylococcus aureus]
          Length = 187

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
               SM P +   D +I++   +       GD ++      +   K +I + G S+   +
Sbjct: 32  VSGLSMYPTFDDKDKVIVSKISKTFNHLDNGDVVVFHQNKKNDYIKRIIGKPGDSVSYRN 91

Query: 198 LN 199
            N
Sbjct: 92  DN 93


>gi|266621706|ref|ZP_06114641.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
 gi|288866607|gb|EFC98905.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
          Length = 291

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          + +  + +R+N+T   LA +  +   + +K +         +P  E +  I    +  +
Sbjct: 5  DNLQVLRKRNNMTQEQLAEQLEVSRQAVSKWESGQS-----YPEMEKLLIICDMFHCDM 58


>gi|261343818|ref|ZP_05971463.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
 gi|282568202|gb|EFB73737.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
          Length = 103

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 5/74 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             H  I   I    +   L+ + LA K  L     ++ +    +        + +  I 
Sbjct: 1  MDIHSIIGTRIKNRRKELGLSGANLASKLNLSQQQISRYENGINK-----IPIDHLLDIA 55

Query: 63 AATNETICQLLDLP 76
                I       
Sbjct: 56 DILMCPIEWFFKGY 69


>gi|209558928|ref|YP_002285400.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus
           phage NZ131.1]
 gi|209540129|gb|ACI60705.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus
           phage NZ131.1]
          Length = 222

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 37/151 (24%), Gaps = 6/151 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + E +++T   LA K G+   +    ++            E    +    + ++
Sbjct: 1   MNRLKELRENNSITQQELAEKIGVHYRTIQNWEKDTKT----QIKPEKAKMLADYFDVSV 56

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LL       +  ++K  +                            +        +  
Sbjct: 57  GYLLGYTDIPQKYEDEKFYKFSFDEEETIYPSSDMRDEDEKIK--EQFIEFNRYLRRYGV 114

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
                  DT  K      +     GD  ++ 
Sbjct: 115 FITNNEIDTVFKLIKHLDINNLYNGDKFLVR 145


>gi|169334840|ref|ZP_02862033.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257578|gb|EDS71544.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 132

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++   I  + +  N+T   LA K  +   + +K +R        +P    I K+    +
Sbjct: 3  NEMGRLISSLRKEKNMTQQELADKLNITDKAVSKWERGLS-----YPDISLIPKLADILD 57

Query: 67 ETIC 70
              
Sbjct: 58 IDPN 61


>gi|70733674|ref|YP_257314.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68347973|gb|AAY95579.1| DNA-binding protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 120

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + ++ NL+ + L + A L  T   + +R         PS +++ ++  A + +
Sbjct: 10 ERLRSLRKQKNLSQTELGQLAELHYTHIGRYERGTSR-----PSGDTLKRLADALDVS 62


>gi|15902995|ref|NP_358545.1| transcriptional regulator [Streptococcus pneumoniae R6]
 gi|15458561|gb|AAK99755.1| Hypothetical protein spr0951 [Streptococcus pneumoniae R6]
          Length = 177

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 21  IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 75

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 76  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 135

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 136 DLSDLIHTNIYLVETFDE 153


>gi|56965066|ref|YP_176798.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56911310|dbj|BAD65837.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 193

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K+I + + ++     ++   LA++ G+   +  K ++         P+   I+KI    +
Sbjct: 17 KQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGN-----PTLSVIWKIANGLH 71

Query: 67 ET 68
            
Sbjct: 72 IP 73


>gi|53715744|ref|YP_101736.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60683678|ref|YP_213822.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|253566443|ref|ZP_04843896.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|255011438|ref|ZP_05283564.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|265767314|ref|ZP_06094980.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|313149255|ref|ZP_07811448.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|52218609|dbj|BAD51202.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60495112|emb|CAH09931.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
 gi|251944615|gb|EES85090.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|263252619|gb|EEZ24131.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|301165190|emb|CBW24760.1| putative transcriptional regulator [Bacteroides fragilis 638R]
 gi|313138022|gb|EFR55382.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 191

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 5/108 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + K + E I  + E   ++   LA ++GL   +  + +R         PS   + KI 
Sbjct: 1   MDTSKIVGEKIKSLRENKGISIEELAERSGL---AIEQIERIENN--IDLPSLAPLIKIA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                 +   LD     G    +K +    + F  +            
Sbjct: 56  RVLGVRLGTFLDDQDETGPVVSRKMEATDTISFSNNAIHSRKHMQYHS 103


>gi|331091855|ref|ZP_08340687.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330402754|gb|EGG82321.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 177

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + I    E    +   LA  +G++  +  K +        R P  + + KI  A  
Sbjct: 2  VGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGI-----RNPKPDQLEKIATALG 54


>gi|329916887|ref|ZP_08276421.1| hypothetical protein IMCC9480_2226 [Oxalobacteraceae bacterium
          IMCC9480]
 gi|327544649|gb|EGF30107.1| hypothetical protein IMCC9480_2226 [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 84

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 19/50 (38%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
           + K+I   +        +T   LAR+AG++  +    +    +   R  
Sbjct: 1  MTTKEIIAQLTARRRELKITQDELARRAGVNRRTIVAIEAGTSDVGLRRL 50


>gi|326405605|gb|ADZ62676.1| transcriptional regulator, Cro/CI family [Lactococcus lactis subsp.
           lactis CV56]
          Length = 107

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I    +  NL+   LA+K  +   S +K +          P+T  I  +    + 
Sbjct: 2   EISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKS-----LPTTGQIILLSEIFDC 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           ++  LL          + +  +   L        GF    +F
Sbjct: 57  SLDTLLKGDKKMEEKAKHEIDDKRTLKLIYKVGWGFIIPLLF 98


>gi|322411791|gb|EFY02699.1| transcriptional regulator [Streptococcus dysgalactiae subsp.
          dysgalactiae ATCC 27957]
          Length = 158

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  +   H+LT    A+  G+   S ++ +           STE I +I    N +
Sbjct: 2  IGDNIKSLRHTHDLTQPEFAKMVGISRNSLSRYENGTST-----VSTELIDRICQKFNVS 56

Query: 69 ICQ 71
             
Sbjct: 57 YVD 59


>gi|322377260|ref|ZP_08051752.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334]
 gi|321281973|gb|EFX58981.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334]
          Length = 194

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 2/41 (4%), Positives = 16/41 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
             +  + +   L+   +A++  +   + ++ +    + + 
Sbjct: 1  MNRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKP 41


>gi|319936355|ref|ZP_08010771.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319808470|gb|EFW05022.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 176

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/101 (10%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + + +M ++  ++   LA+   +   + +K ++        +P  E +  + +  N ++ 
Sbjct: 5   DNLKQMRKKKGISQEELAQLLNVSRQAVSKWEQGIG-----YPEVEKLLILSSQLNVSLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
            L+     +  T++       +L     G        +  +
Sbjct: 60  SLMADEIINNNTSQDNHCSGRILISSYDGKSIVNCYKILSS 100


>gi|317501737|ref|ZP_07959924.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316896859|gb|EFV18943.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 177

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + I    E    +   LA  +G++  +  K +        R P  + + KI  A  
Sbjct: 2  VGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGI-----RNPKPDQLEKIATALG 54


>gi|314922996|gb|EFS86827.1| LexA DNA binding domain protein [Propionibacterium acnes HL001PA1]
          Length = 224

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 39/214 (18%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
            S   +++  A+     R    P+   LA + G   TS  +          R  S+    
Sbjct: 28  PSAKEREVLAAVKEGLRRDGKAPTVRALAERTGAASTSTVQ----------RRISSLIEL 77

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +L  TN T+  + +   +      +  +   L                    +    + 
Sbjct: 78  GLLRRTNGTLEVVEETVEACDPHGPQAFQVKLL--------------NPSNEEHDETVIA 123

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS-AIQVNCGD----RLLIK 174
           VP     H        +      +D  M P    GD++++   ++     D     L+  
Sbjct: 124 VPPQLLSH-------GEHAVIIVRDDGMSPNIHSGDLVVVRRISVSDLPDDPPETYLVAA 176

Query: 175 PRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
              G  V + L +  GR   L S N  +    ++
Sbjct: 177 TAGGTTVVRTLSNVSGRRWLLAS-NPTHSPINLD 209


>gi|302344468|ref|YP_003808997.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301641081|gb|ADK86403.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM
           2075]
          Length = 189

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 50/175 (28%), Gaps = 15/175 (8%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S KK+ E I    ++  L+   +A++ GLD    +  +       + +PS   + KI  
Sbjct: 1   MSAKKLGERIADYRQKQGLSLEQMAQRTGLDQQFLSAVE-----AHDLYPSLGPLIKIAR 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT------ 117
                +   LD   S      +  +    +        G   +  +  G           
Sbjct: 56  TLGVRLGTFLDDQTSQDPLIVRLGQRQRQITTHRG-EQGPESTVFYSLGLGKVDRHMEPF 114

Query: 118 -VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            V +           + + ++     +    L      +  +L     +     +
Sbjct: 115 FVELLPGDEDAQKRSSHEGEEFIVVVEGQVEL--IYGAERFVLEPGDSMYYNSVV 167


>gi|260427903|ref|ZP_05781882.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260422395|gb|EEX15646.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 131

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + I    E   +    LAR+ G+   +    +    E   R    + +  +L  +   
Sbjct: 16 GDRIAAAREAAGMGQEKLARRLGVKLKTLQGWENDLSE--PRANRLQMLAGLLNVSMGW 72


>gi|320012087|gb|ADW06937.1| Cupin 2 conserved barrel domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 194

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 18/139 (12%)

Query: 1   MTSFSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           MT      + +   + R       T   LA +AG+      + ++         PS  + 
Sbjct: 1   MTDLDQLTQSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTN-----PSVGTT 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP-----------PSGSGGFFDSG 107
            K+  A   +I  LLD            ++ + L                +       S 
Sbjct: 56  VKLADALGVSITTLLDYEQGSQVRLVPADQMVRLWSTEAGSSNTLLVGTEARGPIELLSW 115

Query: 108 VFPTGNKWNTVGVPEIRSP 126
               G+   +   PE    
Sbjct: 116 HLMPGDSSLSDPHPEGTVE 134


>gi|227485105|ref|ZP_03915421.1| possible transcriptional regulator [Anaerococcus lactolyticus
          ATCC 51172]
 gi|227236938|gb|EEI86953.1| possible transcriptional regulator [Anaerococcus lactolyticus
          ATCC 51172]
          Length = 67

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    +   L+ + LA+  GL   S    +   I      P+ E+ +KI    ++ 
Sbjct: 5  IENRIREFRKEMGLSQNALAKMVGLKRRSIMAYESNTI-----SPTLETAYKICKVFDKD 59

Query: 69 ICQLLDLP 76
          I ++    
Sbjct: 60 IKEVFIFK 67


>gi|226313140|ref|YP_002773034.1| signal peptidase I [Brevibacillus brevis NBRC 100599]
 gi|226096088|dbj|BAH44530.1| signal peptidase I [Brevibacillus brevis NBRC 100599]
          Length = 166

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 32/106 (30%)

Query: 143 QDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
           +  SM P     D  + +     +  +  GD ++ +        K +I+  G +++  S 
Sbjct: 30  EGESMAPTLNSNDRFLADKTYYDSHPIQRGDIVIFQAEKDRQYVKRVIALPGETLEYKSD 89

Query: 199 -----NC-----------------------CYPVDTVEMSDIEWIA 216
                N                         +   T+    I  + 
Sbjct: 90  ILYINNKVVDEPYLASAKNVAQKENHYLTEDFGPITIPEDTIFVLG 135


>gi|15675312|ref|NP_269486.1| putative transcriptional regulator [Streptococcus pyogenes M1
          GAS]
 gi|139473579|ref|YP_001128295.1| DNA-binding protein [Streptococcus pyogenes str. Manfredo]
 gi|13622491|gb|AAK34207.1| putative transcriptional regulator protein [Streptococcus
          pyogenes M1 GAS]
 gi|134271826|emb|CAM30060.1| putative DNA-binding protein [Streptococcus pyogenes str.
          Manfredo]
          Length = 71

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +  R  +  + +A+ AG+   + +  +R         PS     KI     E 
Sbjct: 5  LKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSVIIAMKIAKVFQEP 59

Query: 69 ICQLLDLPF 77
          + ++  L  
Sbjct: 60 VEEVFRLVE 68


>gi|17549473|ref|NP_522813.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
 gi|17431726|emb|CAD18403.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
          Length = 88

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 19/44 (43%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           + +++   +    ++  L+ + LA + G+   + +  +R    
Sbjct: 7  RTPEQLPAMLKGFRKQAGLSQAELAARMGMRQQTLSALERNAEN 50


>gi|126442387|ref|YP_001062902.1| XRE family transcriptional regulator [Burkholderia pseudomallei
          668]
 gi|126221878|gb|ABN85383.1| transcriptional regulator, XRE family [Burkholderia pseudomallei
          668]
          Length = 94

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+    +   AI ++ E    +   LA   GL+ +   + +R          S  ++ K
Sbjct: 1  MTALVQ-RFGAAIRQLREARAWSQEQLAEHPGLNRSYVGEIERGTAIA-----SIVTVDK 54

Query: 61 ILAATNETICQLLDLPFSDGRTTE 84
          +  A    I +LL      G    
Sbjct: 55 LARAFGVPIARLLSPAGDAGPPPH 78


>gi|310767358|gb|ADP12308.1| Transcriptional regulator [Erwinia sp. Ejp617]
          Length = 189

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/144 (9%), Positives = 35/144 (24%), Gaps = 6/144 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    H  +   +         + +  A+  G+      + +R         P+  +++K
Sbjct: 1   MDRLQH-HLARTLKAQRATRGWSLTQAAQMTGVSKAMLGQIERAES-----SPTIATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I +  N      +    +D      + +                      TG +   V +
Sbjct: 55  IASGFNLPFSFFIAADIADRGAARSQGQLQGYRQPNHGMQIVPLFPFDAETGFEMLVVEL 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
                  +  +     +       
Sbjct: 115 VPGALSESSAHEQGVIEHAIVISG 138


>gi|301382068|ref|ZP_07230486.1| RstR1 [Pseudomonas syringae pv. tomato Max13]
 gi|302058949|ref|ZP_07250490.1| RstR1 [Pseudomonas syringae pv. tomato K40]
 gi|302130444|ref|ZP_07256434.1| RstR1 [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 203

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 6/106 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA----ATNET 68
           +  +    NLT   LA   G+ P+  ++ +    + + R      +   L        ++
Sbjct: 43  LISLRSAQNLTQQQLADAVGITPSQISRYESG--QAKPRKIILLRLADALGVSSTELLQS 100

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             Q + +          + +E  L  F    S     +        
Sbjct: 101 PVQRVVVGERRSIDPPSQLRERMLKEFSSMDSEEIRTAKAQAAEAG 146


>gi|298387336|ref|ZP_06996889.1| HicB family toxin-antitoxin system, antitoxin component
          [Bacteroides sp. 1_1_14]
 gi|298260005|gb|EFI02876.1| HicB family toxin-antitoxin system, antitoxin component
          [Bacteroides sp. 1_1_14]
          Length = 97

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + +    T +  A+K G+   S  +S           PS  ++ +I AA +  + 
Sbjct: 3  HRIKELIKEKGYTQAQFAKKLGITRVSLIQSLEL--------PSGSTLERIAAALDVPMW 54

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          QL   P            +    Y+
Sbjct: 55 QLFASPEEAKGEELTALIQHKSDYY 79


>gi|257465738|ref|ZP_05630109.1| Repressor of flagellae, putative [Actinobacillus minor 202]
 gi|257451398|gb|EEV25441.1| Repressor of flagellae, putative [Actinobacillus minor 202]
          Length = 110

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I R+ +   ++   LA  +G+     ++ +          P   +I  I +    +
Sbjct: 4  LGDNIKRIRKTAGISQQELADMSGVSKAQISRLENGEQN----NPQINTIVSIASNLGVS 59

Query: 69 ICQLLD 74
          I +++ 
Sbjct: 60 IEEIIY 65


>gi|228966529|ref|ZP_04127582.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793251|gb|EEM40801.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 277

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +H    E + ++ +   L+   LA K      + +K +         +P TE +  I   
Sbjct: 14  THMGFGEKLFKLRKEKGLSQEALADKLNTTRQAVSKWENGQG-----FPETEKLIMIGNV 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              ++   L    ++      +   +           G   S     G     +      
Sbjct: 69  FEVSL-DYLLKETAEQSNENMEGYYVSQEMAEGYIVYGQKISKYIALGFSLLILSTIPYL 127

Query: 125 SPHNGIYAIQTQDTRHKTQD 144
                               
Sbjct: 128 LFKENATMSTFLVIIIAVLG 147


>gi|219855544|ref|YP_002472666.1| hypothetical protein CKR_2201 [Clostridium kluyveri NBRC 12016]
 gi|219569268|dbj|BAH07252.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 375

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       I   I +  +   +T   LA   G+   S +K +         +P    + +
Sbjct: 1  MMDMRELNIRRCIIQKRKEKGITQEQLADYIGVSKASVSKWESGLS-----YPDILLLPE 55

Query: 61 ILAATNETICQ 71
          +    N ++ +
Sbjct: 56 LATYFNVSVDE 66


>gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC
          25827]
 gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC
          25827]
          Length = 100

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++ + + I +  +   L+ + LA   G+     ++ +R          +  S+ K L 
Sbjct: 5  NQIVGKEIRKRRKELGLSGAELAGLVGISQQQVSRYERGECNITL--DNLLSLAKALE 60


>gi|170754290|ref|YP_001780243.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169119502|gb|ACA43338.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 136

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 5/88 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  L+   L  K  +   + +K +          P  E +  +      ++ +L
Sbjct: 7   LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           +    +      +      L     S  
Sbjct: 62  VMDVKAKESVKTEPLVMNRLETIIDSID 89


>gi|160884331|ref|ZP_02065334.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483]
 gi|255691648|ref|ZP_05415323.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii
          DSM 17565]
 gi|156110070|gb|EDO11815.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483]
 gi|260622719|gb|EEX45590.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii
          DSM 17565]
          Length = 94

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           I  AI  + +R +++   L+   G+   +    +  G      +PS  +I KI  A 
Sbjct: 2  DIGNAIKLLRKRKDISQKELSNLCGISANALCSIESGGT-----FPSKSTIAKICNAL 54


>gi|148994210|ref|ZP_01823503.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|147927351|gb|EDK78382.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP9-BS68]
          Length = 158

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 6/134 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHK 141
           +    IQT     +
Sbjct: 117 DLSDLIQTNIYLVE 130


>gi|187925298|ref|YP_001896940.1| XRE family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187716492|gb|ACD17716.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
           PsJN]
          Length = 229

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 32  VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L    ++G      E+   ++      S         PT  +++ + +  + +   
Sbjct: 87  VAAFLRRHATNGFEHLPAERSSRVVSSNGRYSARPLYPDAEPTAAEFHELRIAPLHTEAG 146

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
              A           + ++         L+
Sbjct: 147 TRRA-PGTTVNLVVSEGTLEVSVHDQRQLL 175


>gi|83716369|ref|YP_438206.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|167579250|ref|ZP_02372124.1| DNA-binding protein [Burkholderia thailandensis TXDOH]
 gi|167614637|ref|ZP_02383272.1| DNA-binding protein [Burkholderia thailandensis Bt4]
 gi|257141225|ref|ZP_05589487.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83650194|gb|ABC34258.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 202

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A
Sbjct: 21  TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              ++ +L   P +          +IP L    +         +   G  +    +
Sbjct: 76  LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130


>gi|41410065|ref|NP_962901.1| hypothetical protein MAP3967 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118463985|ref|YP_883804.1| XRE family transcriptional regulator [Mycobacterium avium 104]
 gi|254777113|ref|ZP_05218629.1| transcriptional regulator, XRE family protein [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|41398898|gb|AAS06517.1| hypothetical protein MAP_3967 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|48928160|gb|AAT47758.1| possible transcriptional regulator [Mycobacterium avium]
 gi|118165272|gb|ABK66169.1| transcriptional regulator, XRE family protein [Mycobacterium avium
           104]
          Length = 138

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E   ++   LA K+G+     ++ +R       R PS + + +I  A   
Sbjct: 21  DIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERG-----LRKPSADVLNQIAKALRV 75

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +   L         + + + ++  +    
Sbjct: 76  SAEVLYVRAGILEPSDKSQVRDAIVTDTA 104


>gi|54308994|ref|YP_130014.1| putative transcriptional regulator [Photobacterium profundum SS9]
 gi|46913424|emb|CAG20212.1| putative transcriptional regulator [Photobacterium profundum SS9]
          Length = 101

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +    +   ++   L  + G+DP+S +       +GR   P   ++ +I       +  
Sbjct: 10 RLKEARKAAGISQKELGIRLGMDPSSASGRMNHYEKGR-HMPDIATLRRIADELGVPLSY 68

Query: 72 LLDLPFS 78
                +
Sbjct: 69 FFCDSDN 75


>gi|15804867|ref|NP_290908.1| hypothetical protein Z5888 [Escherichia coli O157:H7 EDL933]
 gi|15834506|ref|NP_313279.1| transcription regulator [Escherichia coli O157:H7 str. Sakai]
 gi|187775901|ref|ZP_02799013.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188024876|ref|ZP_02774577.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|189010535|ref|ZP_02807807.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189402054|ref|ZP_02779862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189402821|ref|ZP_02791571.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189403845|ref|ZP_02785537.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189405572|ref|ZP_02822862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC508]
 gi|208808264|ref|ZP_03250601.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208813993|ref|ZP_03255322.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208819818|ref|ZP_03260138.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209396646|ref|YP_002273817.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC4115]
 gi|217326404|ref|ZP_03442488.1| putative transcription regulator [Escherichia coli O157:H7 str.
          TW14588]
 gi|254796292|ref|YP_003081129.1| hypothetical protein ECSP_5374 [Escherichia coli O157:H7 str.
          TW14359]
 gi|12519290|gb|AAG59474.1|AE005659_9 hypothetical protein Z5888 [Escherichia coli O157:H7 str. EDL933]
 gi|13364730|dbj|BAB38675.1| putative transcription regulator [Escherichia coli O157:H7 str.
          Sakai]
 gi|187770260|gb|EDU34104.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188016183|gb|EDU54305.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188999764|gb|EDU68750.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189357829|gb|EDU76248.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189364128|gb|EDU82547.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189368948|gb|EDU87364.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189379428|gb|EDU97844.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC508]
 gi|208728065|gb|EDZ77666.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208735270|gb|EDZ83957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208739941|gb|EDZ87623.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209158046|gb|ACI35479.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC4115]
 gi|217322625|gb|EEC31049.1| putative transcription regulator [Escherichia coli O157:H7 str.
          TW14588]
 gi|254595692|gb|ACT75053.1| predicted protein [Escherichia coli O157:H7 str. TW14359]
 gi|320190592|gb|EFW65242.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC1212]
 gi|326345394|gb|EGD69137.1| putative transcription regulator [Escherichia coli O157:H7 str.
          1125]
 gi|326346751|gb|EGD70485.1| putative transcription regulator [Escherichia coli O157:H7 str.
          1044]
          Length = 154

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K   + +  +     ++    A + G   +  ++ +R G        S ++I  
Sbjct: 1  MKMTLRKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55

Query: 61 ILAATNETIC 70
          +  A +    
Sbjct: 56 LANALSVEPW 65


>gi|299069653|emb|CBJ40926.1| DNA-binding transcriptional regulator [Ralstonia solanacearum
          CMR15]
          Length = 88

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 19/44 (43%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           + +++   +    ++  L+ + LA + G+   + +  +R    
Sbjct: 7  RTPEQLPAMLKGFRKQAGLSQAELAARMGMRQQTLSALERNAEN 50


>gi|296110469|ref|YP_003620850.1| transcription regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832000|gb|ADG39881.1| transcription regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 103

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  + +  NLT   L+++  +   + +  ++        +PS E++ KI    N +
Sbjct: 7  GEKLKAVRKSKNLTQLELSKRLEVSKGTISAYEQGLS-----YPSLETLVKICEILNTS 60


>gi|293401078|ref|ZP_06645223.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306104|gb|EFE47348.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 177

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 43/148 (29%), Gaps = 12/148 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  +  +++LT   LA ++ L     ++ +R         PS  ++  IL A   
Sbjct: 2   DIGAKIKALRIQNDLTLEELASRSELTKGFLSQVERNLT-----SPSVSTLEDILEALGT 56

Query: 68  TICQLLDLPFSD-----GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            +                +     E E   +++    +       +    +   T  V +
Sbjct: 57  DLASFFKESKQTKVVFSKQDHFIDEHEEYCIHWIVPNAQKNEMEPILLELHADKTSMVFD 116

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL 150
                   Y ++ +            P+
Sbjct: 117 PHDGEEFGYVLEGR--ILLVNGEKEYPV 142


>gi|296123878|ref|YP_003631656.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776]
 gi|296016218|gb|ADG69457.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776]
          Length = 143

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + ++ E   L+ + L+R+AGL  ++ ++  +       R  S + I K+ A     
Sbjct: 85  LQQLLEAKGLSQAQLSREAGLPRSTISEVLKG-----KRRFSRQMIHKLAAYFQID 135


>gi|157829815|pdb|1ADR|A Chain A, Determination Of The Nuclear Magnetic Resonance
          Structure Of The Dna-Binding Domain Of The P22 C2
          Repressor (1-76) In Solution And Comparison With The
          Dna-Binding Domain Of The 434 Repressor
          Length = 76

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E I    ++  +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 7  GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALSKALQCSP 61

Query: 70 CQ 71
            
Sbjct: 62 DY 63


>gi|134103416|ref|YP_001109077.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291006044|ref|ZP_06564017.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133916039|emb|CAM06152.1| transcriptional regulator, XRE family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 148

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I        ++   LA++AG+     ++ +R       R PS E + +I  A   
Sbjct: 18 DLGAYIRTQRGNAQISLRQLAKRAGVSNPYLSQVERG-----LRKPSAEILQQIAKALRI 72

Query: 68 T 68
          +
Sbjct: 73 S 73


>gi|86159419|ref|YP_466204.1| XRE family transcriptional regulator [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85775930|gb|ABC82767.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 477

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   +  +  + NLT + LA + G+  +  N  +        R    + + K+     
Sbjct: 6  QHLGAKVRALRRQRNLTQAQLADRLGISASYLNLIEHH-----RRPLPAQLLIKLADLFE 60


>gi|115526465|ref|YP_783376.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisA53]
 gi|115520412|gb|ABJ08396.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisA53]
          Length = 82

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 1  MTSF--SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          MT    +  +I   I    ++   + S L  +AGL   + +  +      R
Sbjct: 1  MTDLARTPSQIGNIIRSARKKRGQSQSQLGERAGLRQETISLIETGHPAAR 51


>gi|322804925|emb|CBZ02484.1| transcriptional regulator, XRE family [Clostridium botulinum H04402
           065]
          Length = 130

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  L+   L  K  +   + +K +          P  E +  +      ++ +L
Sbjct: 7   LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +    +   T  +      L     S    
Sbjct: 62  VMDVKAKESTKTEPLVMNRLETIIHSIDRE 91


>gi|303234360|ref|ZP_07320999.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
 gi|302494476|gb|EFL54243.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
          Length = 143

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E + ++    NLT   LA K+GL   +    +        R PS E + KI  A +  I
Sbjct: 4  GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISEALDCDI 58

Query: 70 CQLLDLPFSDGRTTEK 85
            L++   +       
Sbjct: 59 SALINHEPNSIFEIMH 74


>gi|300785909|ref|YP_003766200.1| SARP family transcriptional regulator fused with ATPase domain
          [Amycolatopsis mediterranei U32]
 gi|299795423|gb|ADJ45798.1| SARP family transcriptional regulator fused with ATPase domain
          [Amycolatopsis mediterranei U32]
          Length = 1034

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          + R      +T + LAR+AG+   +     R+   GR R P T SI +++AA     
Sbjct: 25 LRRRRGELGITQAELARRAGVSVRAV----RYLEHGRTRNPRTASIRQLIAALEPEP 77


>gi|300727575|ref|ZP_07060965.1| helix-turn-helix domain protein [Prevotella bryantii B14]
 gi|299775164|gb|EFI71766.1| helix-turn-helix domain protein [Prevotella bryantii B14]
          Length = 161

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +I   I  + E   +    LAR  G+D  + ++ +             + + KI  A  
Sbjct: 98  RIGNRIKEIREERGIEARDLARLVGIDAANLSRIENGRY-----SVGLDILAKIATALG 151


>gi|327197636|ref|YP_004301327.1| gp51 [Brochothrix phage NF5]
 gi|296245459|gb|ADH03073.1| gp51 [Brochothrix phage NF5]
          Length = 62

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          W  I+++     ++ + LA+KAG+        K+    GR + PS + + K+  A   T+
Sbjct: 2  WHKIEKILIEKGMSQATLAKKAGIRSGDVTDLKK----GRIKKPSFDLVCKLADALEITL 57

Query: 70 CQ 71
            
Sbjct: 58 ED 59


>gi|288960685|ref|YP_003451025.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912993|dbj|BAI74481.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 220

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 10/157 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  +    +LT + LA  AG+     +K +   I      PS  S+  +  A N  I  L
Sbjct: 41  IRSLRRHLDLTVADLAAAAGISTGMLSKIENGQI-----SPSLASLQALAGALNVPITAL 95

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                     +  +  +   +    + SG  ++      G                  + 
Sbjct: 96  FASFEEKRGCSYVRAGQGVGIERRGTKSGHQYELLGHSLGGDIGVEPFLITLREGAAPFT 155

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                        S   LYR GD      + ++  GD
Sbjct: 156 AFQHAGVEYLYMLSGELLYRHGD-----RSYEMRPGD 187


>gi|229827500|ref|ZP_04453569.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC
          49176]
 gi|229788438|gb|EEP24552.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC
          49176]
          Length = 217

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I +       T   +A   G+   + +  +         +P   S+ K+      
Sbjct: 2  EIGSKIKKSRTEAGFTQEQVAESLGVSRQTISNWENEKS-----YPDIISVLKMSDLFKV 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|271964073|ref|YP_003338269.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270507248|gb|ACZ85526.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
          Length = 64

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +     L+   L  + G+   + N  ++   +     PS     ++      T+ ++
Sbjct: 5  VRELRGSAGLSQQALGERLGVSRQTINAIEQGRYD-----PSLPLAIRLARFFGRTVEEV 59

Query: 73 LD 74
            
Sbjct: 60 FH 61


>gi|49082682|gb|AAT50741.1| PA4987 [synthetic construct]
          Length = 200

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 18/164 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +R  LT + LA ++ L     ++ +R        +PS  ++F I  +   T
Sbjct: 20  LGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLA-----YPSIPALFNIARSLGVT 74

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125
             Q      +     +                 G  D  + P  ++   +     P    
Sbjct: 75  -IQWFFASEAAVDPADAGYVVRRNTRMSVHYEDGIIDELLTPQPSRQLEILHSRFPPGTY 133

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                Y+ + ++  +              ++ + +   Q+  GD
Sbjct: 134 -SQQSYSHEGEEAGYILSG--------IFELWVGDRHFQLREGD 168


>gi|16519699|ref|NP_443819.1| uncharacterized transcription regulator, XRE family
          [Sinorhizobium fredii NGR234]
 gi|2495432|sp|P55409|Y4DJ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator
          y4dJ
 gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a
 gi|2182353|gb|AAB91639.1| uncharacterized transcription regulator, XRE family
          [Sinorhizobium fredii NGR234]
          Length = 77

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K +     R+     LT   +  ++G      +  +R       R P+  ++++
Sbjct: 1  MDM--RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERG-----RRNPTVITLYE 53

Query: 61 ILAATNETICQ 71
          +  A   +  +
Sbjct: 54 LAQALGVSHVE 64


>gi|326444238|ref|ZP_08218972.1| hypothetical protein SclaA2_24369 [Streptomyces clavuligerus ATCC
           27064]
          Length = 560

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 4/139 (2%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + E    +   LAR+ G+  ++ ++            P    + +           
Sbjct: 29  RLRELREASGRSYGALARRVGVSASTLHRYCSGHTVPMEFAP----VERFARLCGCQGDD 84

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L+ L         ++          P G G    +   P     + +  P       G  
Sbjct: 85  LVALHRLWMLADAERTLRQEAAGTLPRGGGARPPTTEAPGPAGPSGLPAPGTAVRPPGGA 144

Query: 132 AIQTQDTRHKTQDTSMLPL 150
           A ++      +   S L  
Sbjct: 145 AGRSAPAVEASAGPSGLRA 163


>gi|319946827|ref|ZP_08021061.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis
          ATCC 700641]
 gi|319746875|gb|EFV99134.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis
          ATCC 700641]
          Length = 295

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + ++  ++   LA K G+   +  K +          P  E++  I    N +I 
Sbjct: 5  ENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGI-----PDIENMISISNLFNISID 59

Query: 71 QLLDLPF 77
          +L+    
Sbjct: 60 ELICNER 66


>gi|302337126|ref|YP_003802332.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM
          11293]
 gi|301634311|gb|ADK79738.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae
          DSM 11293]
          Length = 132

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 2/90 (2%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    +   L+ + L  K G+      K +               I +ILA   + 
Sbjct: 8  IGRNIRSYRKACGLSQASLGEKVGVSYQQIQKYENGASS--ISAFQLGRIAEILAVPIDC 65

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
             L     ++       E     L     
Sbjct: 66 FFHLDTESGAEAPPAYSSEIGDEFLRVSQD 95


>gi|291529971|emb|CBK95556.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 122

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I ++ +    + + +A   G+   +++  +        R P   ++ KI       
Sbjct: 14 ERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETG-----KREPPFATLLKIAEYFGTD 66


>gi|284989132|ref|YP_003407686.1| XRE family transcriptional regulator [Geodermatophilus obscurus
          DSM 43160]
 gi|284062377|gb|ADB73315.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
          DSM 43160]
          Length = 90

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 5/62 (8%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S   ++  I  +     +T   LA   G+   +    +R         PS     +I   
Sbjct: 6  SGDAVYNRIALLRAEQGVTRRELADALGVHYQTVGYLERGEYN-----PSLHLALRIAEF 60

Query: 65 TN 66
            
Sbjct: 61 FG 62


>gi|261493122|ref|ZP_05989658.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2
          str. BOVINE]
 gi|261496455|ref|ZP_05992838.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2
          str. OVINE]
 gi|261307888|gb|EEY09208.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2
          str. OVINE]
 gi|261311210|gb|EEY12377.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2
          str. BOVINE]
          Length = 64

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I +      L+   LA   G+   +    +R       R P+  +I K+  A N     L
Sbjct: 4  IRQFRRAIGLSQQELASVIGVTTGAIGFYERG-----LREPNLATIKKLAEALNCKPADL 58

Query: 73 LDLPF 77
            +  
Sbjct: 59 YPVLE 63


>gi|260910500|ref|ZP_05917168.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
          F0295]
 gi|260635342|gb|EEX53364.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
          F0295]
          Length = 102

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 17/39 (43%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          + E +    ++  LT + LA K G   +  ++ +    +
Sbjct: 42 LGERLKEERKKSGLTQAQLAAKIGTKKSYISRIENGHAD 80


>gi|257065271|ref|YP_003144943.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
 gi|256792924|gb|ACV23594.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
          Length = 272

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 2/106 (1%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ EAI    +   LT   LA K  +   + ++ +    E          +  +L     
Sbjct: 2   KVSEAIQNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKL--LASVLGVPAV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            +  L D P      T      +P            +    +  G 
Sbjct: 60  GLFDLPDAPACQCCGTPFDVPNMPFGTNADGTENPDYCGWCYQNGE 105


>gi|254502687|ref|ZP_05114838.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222438758|gb|EEE45437.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 88

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 23/49 (46%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          M++   KK+  A     E+  L+   +  + G+  ++  +++R   +G 
Sbjct: 1  MSALDRKKLGAAFLAAREKRALSLRQVEERTGVSRSTIGRAERGHADGY 49


>gi|167749275|ref|ZP_02421402.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702]
 gi|167657768|gb|EDS01898.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702]
 gi|291556859|emb|CBL33976.1| Predicted transcriptional regulators [Eubacterium siraeum
          V10Sc8a]
          Length = 122

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I ++ +    + + +A   G+   +++  +        R P   ++ KI       
Sbjct: 14 ERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETG-----KREPPFATLLKIAEYFGTD 66


>gi|327490617|gb|EGF22398.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1058]
 gi|328945826|gb|EGG39977.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1087]
          Length = 205

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKARGISQEGLADQFGVSRQAVSKWESEQS-----MPDLDKIISMSDYFAV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGIEPVVQKEEEQSIKHRRI 82


>gi|307324537|ref|ZP_07603744.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
 gi|306889781|gb|EFN20760.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
          Length = 406

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 1/115 (0%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S K I + +  +    ++T   LA ++G+   +  K ++   +   R  +   + + L 
Sbjct: 1   MSSKSIGDRLGELRRYRDITQEELAERSGVHVDTIRKLEQNVRQ-SARLGTLRMLARALD 59

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
              + +     +                 +    +  G   D          + +
Sbjct: 60  TELDRLLGQPTVTTELPDDDGGLIALRDAIQDISALPGVPADDFDEDPPAADDWM 114


>gi|260426660|ref|ZP_05780639.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260421152|gb|EEX14403.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 215

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +  + T    A++AGL  ++ +K +   +      P+ +++ K+      
Sbjct: 34 DLGARVRELRKERDWTLEQAAKQAGLARSTLSKIENGQM-----SPTYDALKKLAVGLGI 88

Query: 68 TICQLLDLP 76
           + QL   P
Sbjct: 89 GVPQLFTPP 97


>gi|320010701|gb|ADW05551.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 135

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + +A+        ++ + LAR+AG+     +K +  G       P+   + ++  
Sbjct: 37 DVGQAVHDRRAECGISQTELARRAGMTQPQVSKLEIGGT-----LPTVALLARLAR 87


>gi|302531579|ref|ZP_07283921.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302440474|gb|EFL12290.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 82

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +     +  L    LA  AG+  T  ++ +R       R  +  ++ K        
Sbjct: 13 IGERVREFRNKAGLNQEQLAEAAGVHWTFVSQVERG-----LRNINLHNLLKFADGLGVN 67

Query: 69 I 69
           
Sbjct: 68 P 68


>gi|253577419|ref|ZP_04854735.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251843219|gb|EES71251.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 76

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I +  +R  LT + LA + G+   + N  +    +     P+ E  FK+       + +L
Sbjct: 18 IKQFRKRLGLTQNELAAECGVTRQTINCVENNRYD-----PTLELAFKLAKILQTKVDEL 72

Query: 73 LDLP 76
              
Sbjct: 73 FIYE 76


>gi|302875139|ref|YP_003843772.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307690235|ref|ZP_07632681.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302577996|gb|ADL52008.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 182

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          + + I   I R+ +  NLT   LA   G+  +  ++ +R       + P+   + KI   
Sbjct: 4  TSETISRNIKRIRQERNLTLDDLAILTGVSKSMLSEIERCT-----KSPTISVLEKICDG 58

Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLY 94
           N  + QL                +    +
Sbjct: 59 INVPLAQLTHTEMPQVSVITNDTVKNYSAW 88


>gi|226949637|ref|YP_002804728.1| hypothetical protein CLM_2574 [Clostridium botulinum A2 str.
          Kyoto]
 gi|226840892|gb|ACO83558.1| conserved domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 73

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + ++  +  LT   LA+K  +   + +  +R         PS   + +I     +   Q+
Sbjct: 5  LKKLRLQFGLTQGELAQKLKVARPTISNIEREIYT-----PSGSLMIRIANFFGKPAEQI 59

Query: 73 LDLPFSDGRTT 83
                     
Sbjct: 60 FFEDSVMQEEQ 70


>gi|78067487|ref|YP_370256.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77968232|gb|ABB09612.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 233

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 6/135 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + KI AA   +
Sbjct: 35  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKIAAALKVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+   ++      S         P                  
Sbjct: 90  VAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPA-AAEFHELRIAPLHTEP 148

Query: 129 GIYAIQTQDTRHKTQ 143
           G              
Sbjct: 149 GARRAPGTTVNLVVS 163


>gi|50365272|ref|YP_053697.1| Cro/CI family transcriptional regulator [Mesoplasma florum L1]
 gi|50363828|gb|AAT75813.1| transcriptional regulator Cro/CI family [Mesoplasma florum L1]
          Length = 75

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 1  MTSFSHKK-----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          M  +S +      I   + ++     LT   L  + G+     +  +R       R  + 
Sbjct: 1  MKKYSGEDDLILIIAANLRKIRSSKGLTQEELGFRCGISKNYISDFERG-----RRNITI 55

Query: 56 ESIFKILAATNETICQ 71
          + + K++     T  +
Sbjct: 56 KILQKLIEGLETTPQE 71


>gi|323703828|ref|ZP_08115464.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531185|gb|EGB21088.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 133

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 9/112 (8%)

Query: 11  EAIDRMAERHN--LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +  + E+H   +    LA   G+   +    +        R P T ++ K+      +
Sbjct: 5   DRLKHLREKHKPKIYQKELADAIGVSRQAITMWETGQ-----RIPDTVTLKKLADFFGVS 59

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                 L  +D       E     L      +   FD       +K + +  
Sbjct: 60  T--DYLLGRTDIPNNVNDEPTPQELEKVLREANIAFDGAPLDEEDKEDVIEF 109


>gi|323693263|ref|ZP_08107481.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323502746|gb|EGB18590.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 151

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +  +  +T   LA +  +   + +  +R   E     P   ++ KI       +
Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNE-----PDLNTLKKICFLFGVHM 65

Query: 70 CQL 72
             
Sbjct: 66 DDF 68


>gi|317500621|ref|ZP_07958840.1| HTH domain-containing protein [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316897939|gb|EFV19991.1| HTH domain-containing protein [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 151

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +  +  +T   LA +  +   + +  +R   E     P   ++ KI       +
Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNE-----PDLNTLKKICFLFGVHM 65

Query: 70 CQL 72
             
Sbjct: 66 DDF 68


>gi|239625605|ref|ZP_04668636.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239519835|gb|EEQ59701.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 190

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I    +   LT   L+ + GL     ++ +R   E     PS  S+ KI    +  
Sbjct: 2   LGTNIREYRKNKKLTIKELSERTGLSIGYISQVEREEAE-----PSLSSLRKIAREFDVP 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +  L+D   +    T ++E+ +       S    F      P 
Sbjct: 57  VYVLMDDHRNTHNLTIRREERLSARIKKSSVEYEFLTPLPSPN 99


>gi|222081796|ref|YP_002541161.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726475|gb|ACM29564.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 204

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WPSTESI 58
          +   +  +    NL+ + LA + G+   + ++ +R     R R  WP   ++
Sbjct: 22 VGRRVRALRLERNLSLAELATRTGISIGALSQIERGMSSLRVRVIWPLAAAL 73


>gi|323487601|ref|ZP_08092891.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum
          WAL-14163]
 gi|157816226|gb|ABV82119.1| HTH domain protein [Streptococcus parasanguinis]
 gi|198387264|gb|ACH87089.1| helix-turn-helix XRE-family-like protein [Escherichia coli]
 gi|323399100|gb|EGA91508.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum
          WAL-14163]
          Length = 151

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  +  +  +T   LA +  +   + +  +R   E     P   ++ KI       +
Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNE-----PDLNTLKKICFLFGVHM 65

Query: 70 CQL 72
             
Sbjct: 66 DDF 68


>gi|197284179|ref|YP_002150051.1| fimbrial operon regulator [Proteus mirabilis HI4320]
 gi|194681666|emb|CAR40739.1| fimbrial operon regulator [Proteus mirabilis HI4320]
          Length = 106

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 5/97 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I +  +    T   LA+K G+    F++ +R   +   R         +    N  
Sbjct: 15  VGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVL-----LALYLNTP 69

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
           I    +  +    +   K  +        +    F  
Sbjct: 70  IYWFFEDCYVKKPSLNNKGIDKRNYVIAQATPDAFHY 106


>gi|253701031|ref|YP_003022220.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251775881|gb|ACT18462.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 104

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 5  SHKKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          + +  + A+D +    +   LT   +A K G+   S  + +          PS E + K 
Sbjct: 29 TLEDEFAALDVLLKARKAAGLTQEEVAAKMGVSQPSLARVEASLGS-HRHSPSLEMLRKY 87

Query: 62 LAATNE 67
           AA N 
Sbjct: 88 AAAVNC 93


>gi|167838935|ref|ZP_02465712.1| aldehyde dehydrogenase-like protein [Burkholderia thailandensis
          MSMB43]
          Length = 170

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 19 RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFS 78
          ++ L+   LA++AG+   + +  ++  +      PS  S+ K+L     ++ +       
Sbjct: 2  KYGLSQRELAKRAGVTNGTISLIEQNRV-----SPSVGSLKKLLECIPMSLAEFFTFEVG 56

Query: 79 DGRTTEKKEKEIPLL 93
          + R+   +   +P L
Sbjct: 57 ENRSVVSRRAGMPNL 71


>gi|116334693|ref|YP_796220.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC
           367]
 gi|116100040|gb|ABJ65189.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC
           367]
          Length = 120

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/99 (9%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++  +  L+   LA +  +   S +K ++         P  +++  +      ++ +L
Sbjct: 9   LSQLRRQAGLSQEQLASQVFVTRQSVSKWEQGETT-----PDLDTLISLATVLGVSLDEL 63

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +    +    TE +           +             
Sbjct: 64  VSGRSTATHQTETETTFDQPEPAGATTGHSMNFWEFLAN 102


>gi|227357946|ref|ZP_03842289.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
 gi|6453635|emb|CAB61440.1| mrpJ [Proteus mirabilis HI4320]
 gi|227161855|gb|EEI46884.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
          Length = 107

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 5/97 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I +  +    T   LA+K G+    F++ +R   +   R         +    N  
Sbjct: 16  VGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVL-----LALYLNTP 70

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
           I    +  +    +   K  +        +    F  
Sbjct: 71  IYWFFEDCYVKKPSLNNKGIDKRNYVIAQATPDAFHY 107


>gi|28870261|ref|NP_792880.1| transcriptional regulator [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|28853508|gb|AAO56575.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|331016477|gb|EGH96533.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 212

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++   + R+  +  L+   LAR  G+      + +          PS + + KI 
Sbjct: 26 DLIGPRVARNLQRLRSKRYLSMDALARLTGVSRAMLAQIESGRSV-----PSIKVLCKIA 80

Query: 63 AATNET 68
               +
Sbjct: 81 KGLKVS 86


>gi|62179770|ref|YP_216187.1| hypothetical protein SC1200 [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|167554065|ref|ZP_02347806.1| helix-turn-helix domain protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|62127403|gb|AAX65106.1| hypothetical protein SCH_1200 [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|205321656|gb|EDZ09495.1| helix-turn-helix domain protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
          Length = 102

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   LT + +A + G   T+  + +     G +  PS  ++ K   AT 
Sbjct: 44 AARKEAGLTQAEVAERMGTKATAITRMESNLAAGVS-GPSFTTLKKFAQATG 94


>gi|34496365|ref|NP_900580.1| hypothetical protein CV_0910 [Chromobacterium violaceum ATCC
          12472]
 gi|34102218|gb|AAQ58584.1| hypothetical protein CV_0910 [Chromobacterium violaceum ATCC
          12472]
          Length = 167

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 6/78 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I ++  +   +   LA  +GL   +  + +R          S ES+  + +       +L
Sbjct: 3  IQKLRLQRGWSQQQLADLSGLSVRTIQRIERGQGA------SVESLKSLASVFEIDFSEL 56

Query: 73 LDLPFSDGRTTEKKEKEI 90
             P     TT       
Sbjct: 57 NKEPAMMDPTTPDAIAAP 74


>gi|70725312|ref|YP_252226.1| hypothetical protein SH0311 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68446036|dbj|BAE03620.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 67

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R     + LA++AG+   + +  +R         PS  +  KI    NE + 
Sbjct: 3  NRLKELRARDGFNQTQLAKQAGISRQTVSLIERNDF-----MPSILTAVKIARIFNEPVE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 NVFIFEE 64


>gi|219667028|ref|YP_002457463.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219537288|gb|ACL19027.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 277

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42
          ++ + I R  +    T   LARK G+   + +K +
Sbjct: 4  ELAKNICRYRKEKGFTQEELARKLGVTFQAVSKWE 38


>gi|328948780|ref|YP_004366117.1| hypothetical protein Tresu_1938 [Treponema succinifaciens DSM
          2489]
 gi|328449104|gb|AEB14820.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 151

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          ++    + I  +  +  +T   LA +  +   + +  +R   E     P    + KI   
Sbjct: 6  TNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNE-----PDLNMLKKICFL 60

Query: 65 TNETICQLLDLPFSDGRTTEKKEKEI 90
              +        +   T EKKEK  
Sbjct: 61 FGVNMDDFAKEVITKMETYEKKEKRQ 86


>gi|324327242|gb|ADY22502.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 374

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 14/194 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             N +I +L+       +   K         F                   ++   +   
Sbjct: 56  YFNISIDELISYTPQMEQEDIKDLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPL--- 112

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVA 182
                 I  +              + +  +   L      +    D  L+ +  +     
Sbjct: 113 ---LIQIGILFINHHMLTEDTDKRIEMLEEAMYLFSRVQEE--SDDVSLVKEAVSFQATC 167

Query: 183 KVLISRRGRSIDLM 196
            +++++   ++ L+
Sbjct: 168 YLILNKPNEALQLL 181


>gi|292557941|gb|ADE30942.1| Helix-turn-helix type 3 [Streptococcus suis GZ1]
          Length = 149

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          ++    + I  +  +  +T   LA +  +   + +  +R   E     P    + KI   
Sbjct: 6  TNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNE-----PDLNMLKKICFL 60

Query: 65 TNETICQLLDLPFSDGRTTEKKEKEI 90
              +        +   T EKKEK  
Sbjct: 61 FGVNMDDFAKEVITKMETYEKKEKRQ 86


>gi|228905139|ref|ZP_04069146.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL
          4222]
 gi|228854461|gb|EEM99112.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL
          4222]
          Length = 145

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +   L+   LA + G         ++       R P  +++ KI      +
Sbjct: 2  LGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQ-----REPDYDTLKKIADFFEVS 56


>gi|228935113|ref|ZP_04097940.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228824478|gb|EEM70283.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 145

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +   L+   LA + G         ++       R P  +++ KI      +
Sbjct: 2  LGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQ-----REPDYDTLKKIADFFEVS 56


>gi|269124926|ref|YP_003298296.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268309884|gb|ACY96258.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 145

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I    +R  ++   LA  +G+     ++ +R       R PS E + +I      +
Sbjct: 9  IGEYIREQRQRAKISLRQLADVSGISNPYLSQIERG-----LRKPSAEILQQIAKGLRIS 63


>gi|269955944|ref|YP_003325733.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304625|gb|ACZ30175.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 266

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 5/137 (3%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R+ E   +T   LA++AG+D  +    +        R PS  ++ ++  A    +   
Sbjct: 11  LRRVREGAAMTQRELAQRAGVDQATIAGIETG-----RRMPSLPTLVRLAEAAGRQLRVE 65

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           ++   +D         ++  +      +  +              V  P   +      A
Sbjct: 66  IEPLDADVAELVGDVDQVAQVRDAVGAALAYVFETGPEFDPPPYRVEGPAAVALLGAPMA 125

Query: 133 IQTQDTRHKTQDTSMLP 149
                        S+  
Sbjct: 126 KPPLHIALADTTHSVEW 142


>gi|156741559|ref|YP_001431688.1| XRE family transcriptional regulator [Roseiflexus castenholzii
          DSM 13941]
 gi|156232887|gb|ABU57670.1| transcriptional regulator, XRE family [Roseiflexus castenholzii
          DSM 13941]
          Length = 119

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M SF ++++ E I R  +R  LT + L  + G+  +  +  +        R    E++  
Sbjct: 1  MPSF-NERVGEVIKRKRQRDRLTQAELGGRIGVSGSYISSIENGQSSA--RIADIEALAV 57

Query: 61 ILAATNET 68
          +   T   
Sbjct: 58 VFRTTAFD 65


>gi|115359884|ref|YP_777022.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|171321325|ref|ZP_02910285.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|115285172|gb|ABI90688.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          AMMD]
 gi|171093407|gb|EDT38593.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
          Length = 95

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
                 L+ + +A + G    +  + +R    G+   PS +++ K  AA  
Sbjct: 37 AARRDAGLSQADVAERMGTKAPAVTRLERALATGQ-HSPSIDTLRKYAAACG 87


>gi|90021251|ref|YP_527078.1| XRE family transcriptional regulator [Saccharophagus degradans
          2-40]
 gi|89950851|gb|ABD80866.1| conserved hypothetical protein [Saccharophagus degradans 2-40]
          Length = 175

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             + R+ +   L+   LAR+A +  ++ +  ++  +      PS  S+ +IL+A   +
Sbjct: 2  GRKLMRLRQDRGLSQRELARRAEMTNSTLSMIEQGKV-----SPSVASLERILSAIPIS 55


>gi|52079357|ref|YP_078148.1| putative DNA binding protein [Bacillus licheniformis ATCC 14580]
 gi|52784719|ref|YP_090548.1| YazB [Bacillus licheniformis ATCC 14580]
 gi|319646859|ref|ZP_08001088.1| YazB protein [Bacillus sp. BT1B_CT2]
 gi|52002568|gb|AAU22510.1| putative DNA binding protein [Bacillus licheniformis ATCC 14580]
 gi|52347221|gb|AAU39855.1| YazB [Bacillus licheniformis ATCC 14580]
 gi|317391447|gb|EFV72245.1| YazB protein [Bacillus sp. BT1B_CT2]
          Length = 68

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  R+  +   LA+  G+   +    ++         PS     KI       + 
Sbjct: 3  NRVRELRARYGYSQEALAKAIGVTRQTVAAIEKGNYI-----PSLLLALKICKEFQLKME 57

Query: 71 QLL 73
           + 
Sbjct: 58 DVF 60


>gi|84515262|ref|ZP_01002624.1| DNA binding protein, putative [Loktanella vestfoldensis SKA53]
 gi|84510545|gb|EAQ07000.1| DNA binding protein, putative [Loktanella vestfoldensis SKA53]
          Length = 299

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +    +R  +  + LAR  G+D ++ ++  +       R P+ + + +  AA   +  
Sbjct: 16  DRLVAAMDRTGIKQAALARWTGVDRSTLSQLLKDQG---ARLPNAQLVAECSAALGVSAD 72

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119
            LL L     +        I +     +       +      G K   V 
Sbjct: 73  WLLGLSDFPEQAAALVAAAISMPEASRAMGDDQIFAWHQEAAGYKIRHVP 122


>gi|331085764|ref|ZP_08334847.1| hypothetical protein HMPREF0987_01150 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406687|gb|EGG86192.1| hypothetical protein HMPREF0987_01150 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 108

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   +   I  + E++ LT   LA K G+   S ++         +R P    I  I  
Sbjct: 1  MNENTLGGRIAELLEKNGLTQRELAEKVGVTEVSMSRYISN-----DRTPKGPVIANIAT 55

Query: 64 ATNET 68
          A + T
Sbjct: 56 ALHTT 60


>gi|321314262|ref|YP_004206549.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5]
 gi|320020536|gb|ADV95522.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5]
          Length = 129

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 6/119 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + ++ +   +    +A   G+  T++   ++       R P  E++ KI      T+  
Sbjct: 6   RLKKLRDGKKMNQQEVADNLGIARTTYASYEQG-----KREPDHETLVKIANFFEVTV-D 59

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            L     + +    +EK    +   P     F D+  F    +   +            
Sbjct: 60  YLLGHQPNSKPVVHEEKAPYKVTDDPDLQIAFKDASDFSEEARRQAIDFINYLKEKEKA 118


>gi|315281167|ref|ZP_07869853.1| transcriptional regulator [Listeria marthii FSL S4-120]
 gi|313615189|gb|EFR88648.1| transcriptional regulator [Listeria marthii FSL S4-120]
          Length = 67

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  + E  ++  + LA+   +   + +  ++         PS E   KI    + ++ ++
Sbjct: 7  LKNLREERDIAQNELAKALEVSRQTIHAIEKGKYN-----PSLELSLKIAKYFHLSVEEI 61

Query: 73 LD 74
           +
Sbjct: 62 FN 63


>gi|256848879|ref|ZP_05554313.1| predicted protein [Lactobacillus crispatus MV-1A-US]
 gi|256714418|gb|EEU29405.1| predicted protein [Lactobacillus crispatus MV-1A-US]
          Length = 115

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M  +  KK+   I  + ++ NL  + L     +   +    +          P ++++  
Sbjct: 1  MKDYDRKKLANNIKTLRKQKNLNQAELGEILHVSQQTIGSWETGRAI-----PGSDTLKI 55

Query: 61 ILAATNETICQ 71
          +      +  +
Sbjct: 56 LADYFQVSTDE 66


>gi|240169634|ref|ZP_04748293.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
          12478]
          Length = 471

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             + R+ E   LT   LAR   L  +  N+ +     
Sbjct: 7  GARLRRLREEQGLTQMALARALDLSTSYVNQLENDQRP 44


>gi|255505869|ref|ZP_05348580.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella
           formatexigens DSM 14469]
 gi|255265478|gb|EET58683.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella
           formatexigens DSM 14469]
          Length = 137

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +  + +I   I R  ++  L  + +  KA L     +  +R         PS E I ++ 
Sbjct: 31  TLDYNEIGRRIARRRKQLGLKQAEVEEKADLSYKYLSNIERSISI-----PSIEVIMRLA 85

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            A + T  + L           K   EI   + P   S             
Sbjct: 86  VALDTTPDEFLVGTLQTENEEWKNVAEILRNFDPKKLSLAKNFLIWLSEQE 136


>gi|147921238|ref|YP_684949.1| putative transcription regulator [uncultured methanogenic
          archaeon RC-I]
 gi|110620345|emb|CAJ35623.1| putative transcription regulator [uncultured methanogenic
          archaeon RC-I]
          Length = 68

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +  RHN+T   LA+K G+   +    ++   +     PS    F++       I  +
Sbjct: 5  LKELRARHNMTQEDLAQKVGVSRQTIVAIEKQKYD-----PSLSLAFRLARCFGVKIEDI 59

Query: 73 LDLP 76
           +  
Sbjct: 60 FEED 63


>gi|126179337|ref|YP_001047302.1| hypothetical protein Memar_1391 [Methanoculleus marisnigri JR1]
 gi|125862131|gb|ABN57320.1| protein of unknown function DUF955 [Methanoculleus marisnigri
          JR1]
          Length = 342

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          I E I        L+   LA K GL   + +K +   +  R+
Sbjct: 3  IGERIKSARIGAGLSQRNLAEKMGLSAMAISKYENGEVTPRS 44


>gi|189501325|ref|YP_001960795.1| XRE family plasmid maintenance system antidote protein [Chlorobium
           phaeobacteroides BS1]
 gi|189496766|gb|ACE05314.1| plasmid maintenance system antidote protein, XRE family [Chlorobium
           phaeobacteroides BS1]
          Length = 157

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 6/95 (6%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S       +  +  R  ++   LA   G+ P   +K  +          + E+I K+ 
Sbjct: 41  KRSQAIALRVLRSLRSRK-MSQKDLAEMMGVTPQHISKIVKGREN-----LTLETIAKLE 94

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
           AA    +  +             +     +   P 
Sbjct: 95  AALGIALMDVPCYEERQRVCVSDESIFPHVQTAPQ 129


>gi|317123219|ref|YP_004097331.1| helix-turn-helix domain protein [Intrasporangium calvum DSM
          43043]
 gi|315587307|gb|ADU46604.1| helix-turn-helix domain protein [Intrasporangium calvum DSM
          43043]
          Length = 89

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 8/64 (12%)

Query: 3  SFSH-KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            +  +++  A+        L+   LA +AG+     ++ +     G         + K+
Sbjct: 1  MLTTVRELGAALRDARRASGLSQEALAERAGVSRPWLSRLETAANPG-------AELRKV 53

Query: 62 LAAT 65
          L   
Sbjct: 54 LDVL 57


>gi|306834504|ref|ZP_07467617.1| XRE family transcriptional regulator [Streptococcus bovis ATCC
          700338]
 gi|304423306|gb|EFM26459.1| XRE family transcriptional regulator [Streptococcus bovis ATCC
          700338]
          Length = 157

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + +   LT   LA K  +   +  + +    + +      +   ++      ++
Sbjct: 1  MNRLKELRKEKKLTQKELADKINVSKITVLRWENGERQIKP-----DKAQQLADFFGVSV 55

Query: 70 CQLLDLPFSDGRTT 83
            LL     +    
Sbjct: 56 GYLLGYSEYNNSQE 69


>gi|285017009|ref|YP_003374720.1| hypothetical protein XALc_0188 [Xanthomonas albilineans GPE PC73]
 gi|283472227|emb|CBA14733.1| hypothetical protein XALc_0188 [Xanthomonas albilineans]
          Length = 270

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             + R+ +   +T   LA   G    +     +      + R P    +  I  A   +I
Sbjct: 41  HNLKRLRQARGMTQEELALACGWGGQSRVANYES--NSPKAREPKLSELSAIAEALCVSI 98

Query: 70  CQLLDLPF 77
            +LL    
Sbjct: 99  TELLTDHD 106



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + +  + E   +     A  A        + ++    G N+ P+ + I          
Sbjct: 125 IGDRLKDLREAAGMNQPEFAAIAKTSKQYVGRLEK----GYNKDPNPKFIELWARHFGVR 180

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           +  +          ++  ++   ++   
Sbjct: 181 MEWITAGKLPKDAGSKDVQRPAEVITAS 208


>gi|261212913|ref|ZP_05927197.1| error-prone repair protein UmuD [Vibrio sp. RC341]
 gi|260837978|gb|EEX64655.1| error-prone repair protein UmuD [Vibrio sp. RC341]
          Length = 135

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                  +    +     K    SM  +    GD+LI++  ++    D ++     G+ V
Sbjct: 26  SIDLDGLLIQHPSATFIGKASGDSMQGVGIFDGDLLIVDRHLEAMNHDVIVANFN-GEFV 84

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVE 208
            K+L  RR     L+S N       + 
Sbjct: 85  CKILDIRRR---LLLSANEKMQPVAIH 108


>gi|260184880|ref|ZP_05762354.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289445548|ref|ZP_06435292.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289418506|gb|EFD15707.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
          Length = 256

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 43/185 (23%), Gaps = 12/185 (6%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S +    AI  + E  + + + LA   G+     +  +R       R P   ++ K+  
Sbjct: 1   MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGA-----RKPHKSTVQKVEN 55

Query: 64  ATNETICQLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                      L  +     E       +      +    +             G     
Sbjct: 56  GLGLPPGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQ 115

Query: 118 VGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           + V   +        + + +          +           +      +   RL+   R
Sbjct: 116 LDVIKSVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLR 175

Query: 177 TGDIV 181
             +  
Sbjct: 176 ALEAT 180


>gi|223983578|ref|ZP_03633760.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM
          12042]
 gi|223964464|gb|EEF68794.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM
          12042]
          Length = 353

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATN 66
          KI E I +  +   LT   +A   G+   + NK +           P    + K    T 
Sbjct: 2  KINEVIRQRRKELGLTQDRVAELLGVSAPAVNKWENGNSYPDITLLPPLARLLKTDLNTL 61

Query: 67 ETICQ 71
           +   
Sbjct: 62 LSFQD 66


>gi|206576130|ref|YP_002237033.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|206565188|gb|ACI06964.1| DNA-binding protein [Klebsiella pneumoniae 342]
          Length = 189

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I R+ +   ++ + L++ +G+   + +K +        R  + ++I   L     
Sbjct: 15 NIGSKIRRLRQSRGISLNDLSKLSGVSKGALSKLESGSSS--PRVDTLDAIATALRLPVG 72

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLY 94
           +       +           E   + 
Sbjct: 73 DLLSGGSRMYPRFEKHRPVPGEYSQMM 99


>gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC
          27755]
 gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC
          27755]
          Length = 295

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 15/38 (39%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          E +  + ++  ++   LA K G+   +  K +      
Sbjct: 7  ENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIP 44


>gi|154503571|ref|ZP_02040631.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC
          29149]
 gi|260589920|ref|ZP_05855833.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|153795671|gb|EDN78091.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC
          29149]
 gi|260539727|gb|EEX20296.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
          Length = 128

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I +  +   ++ S L+ K G    + ++ ++ GIE          + K+    +  I  L
Sbjct: 12 IRKKRKELGISQSELSEKLGTSQQTISRIEKAGIENIP----CNLLIKLADIFHVPIDIL 67

Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPPSG 99
          +    ++  +++ +E          + 
Sbjct: 68 IYEEQNNLFSSQGEELWEIYKQLDEAN 94


>gi|146302601|ref|YP_001197192.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146157019|gb|ABQ07873.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 133

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 1  MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42
          M++ +  + I   I R+ E   +    LA   G    + +  +
Sbjct: 1  MSTLNRPRNIGRNISRIRELRGMKQGALADAIGTSQQTISSIE 43


>gi|15801392|ref|NP_287409.1| hypothetical protein Z1932 [Escherichia coli O157:H7 EDL933]
 gi|12514864|gb|AAG56021.1|AE005334_8 orf; hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 111

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   + ++ +  NLT + LA+++G+     +K +R         PS   + ++  A N 
Sbjct: 19 DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTS-----SPSATILSRLANALNI 73

Query: 68 TICQLLDLPFSDGR 81
          T+ +L         
Sbjct: 74 TLSKLFAELEMQQN 87


>gi|21222193|ref|NP_627972.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|256786717|ref|ZP_05525148.1| regulatory protein [Streptomyces lividans TK24]
 gi|289770612|ref|ZP_06529990.1| regulatory protein [Streptomyces lividans TK24]
 gi|10432486|emb|CAC10320.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289700811|gb|EFD68240.1| regulatory protein [Streptomyces lividans TK24]
          Length = 449

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 6/66 (9%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             I   + R+     +T   LA      P            GR R PS E++  +    
Sbjct: 7  RNDIGRRVQRLRAERGMTQRQLAE-----PAYTPAYISTLEAGRVR-PSDEALRHLADRL 60

Query: 66 NETICQ 71
               +
Sbjct: 61 GVGYEE 66


>gi|15608269|ref|NP_215645.1| transcriptional regulator protein [Mycobacterium tuberculosis
          H37Rv]
 gi|15840567|ref|NP_335604.1| DNA-binding protein, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31792323|ref|NP_854816.1| transcriptional regulator protein [Mycobacterium bovis AF2122/97]
 gi|121637061|ref|YP_977284.1| putative transcriptional regulator protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148660915|ref|YP_001282438.1| putative transcriptional regulator protein [Mycobacterium
          tuberculosis H37Ra]
 gi|148822343|ref|YP_001287097.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167969266|ref|ZP_02551543.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|215402959|ref|ZP_03415140.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|215410750|ref|ZP_03419558.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215426424|ref|ZP_03424343.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|215445295|ref|ZP_03432047.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|218752816|ref|ZP_03531612.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|219557015|ref|ZP_03536091.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|224989534|ref|YP_002644221.1| putative transcriptional regulator protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253799830|ref|YP_003032831.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254231403|ref|ZP_04924730.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C]
 gi|254364034|ref|ZP_04980080.1| hypothetical transcriptional regulator protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254550127|ref|ZP_05140574.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260186058|ref|ZP_05763532.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|260200171|ref|ZP_05767662.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|260204374|ref|ZP_05771865.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289442559|ref|ZP_06432303.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289446719|ref|ZP_06436463.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289555084|ref|ZP_06444294.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289569125|ref|ZP_06449352.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289573782|ref|ZP_06454009.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289744873|ref|ZP_06504251.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|289749665|ref|ZP_06509043.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289757219|ref|ZP_06516597.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|289761269|ref|ZP_06520647.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
          1503]
 gi|294993308|ref|ZP_06798999.1| transcriptional regulator [Mycobacterium tuberculosis 210]
 gi|297633669|ref|ZP_06951449.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297730656|ref|ZP_06959774.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|298524627|ref|ZP_07012036.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306775285|ref|ZP_07413622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306781801|ref|ZP_07420138.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306788203|ref|ZP_07426525.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306792532|ref|ZP_07430834.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306967199|ref|ZP_07479860.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|307079114|ref|ZP_07488284.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307083678|ref|ZP_07492791.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|313657986|ref|ZP_07814866.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|2117223|emb|CAB09040.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium
          tuberculosis H37Rv]
 gi|13880746|gb|AAK45418.1| DNA-binding protein, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31617911|emb|CAD94021.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium bovis
          AF2122/97]
 gi|121492708|emb|CAL71177.1| Probable transcriptional regulator protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|124600462|gb|EAY59472.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C]
 gi|134149548|gb|EBA41593.1| hypothetical transcriptional regulator protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148505067|gb|ABQ72876.1| putative transcriptional regulator protein [Mycobacterium
          tuberculosis H37Ra]
 gi|148720870|gb|ABR05495.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis F11]
 gi|224772647|dbj|BAH25453.1| putative transcriptional regulator protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253321333|gb|ACT25936.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289415478|gb|EFD12718.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289419677|gb|EFD16878.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289439716|gb|EFD22209.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289538213|gb|EFD42791.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289542879|gb|EFD46527.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289685401|gb|EFD52889.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|289690252|gb|EFD57681.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289708775|gb|EFD72791.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
          1503]
 gi|289712783|gb|EFD76795.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|298494421|gb|EFI29715.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216217|gb|EFO75616.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308325442|gb|EFP14293.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308335215|gb|EFP24066.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308339022|gb|EFP27873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308355148|gb|EFP43999.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308363022|gb|EFP51873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308366671|gb|EFP55522.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323720411|gb|EGB29505.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326904644|gb|EGE51577.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328459575|gb|AEB04998.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 486

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             + R+ +   LT   LA+   L  +  N+ +     
Sbjct: 19 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRP 56


>gi|84501262|ref|ZP_00999467.1| transcriptional regulator, XRE family with cupin sensor domain
          [Oceanicola batsensis HTCC2597]
 gi|84390553|gb|EAQ03041.1| transcriptional regulator, XRE family with cupin sensor domain
          [Oceanicola batsensis HTCC2597]
          Length = 213

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          ++ + I ++ E   LT   +A ++GL  ++ +K +R 
Sbjct: 22 ELGQRIRQLREARGLTLQTIADRSGLAISTISKIERG 58


>gi|146280227|ref|YP_001170384.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558468|gb|ABP73079.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 652

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I   I R  +R  LT  GLA  + +   + +  +R         P  ++++ +  A  
Sbjct: 12 RIGANIARARQRRGLTLDGLAELSCVSRATISALERGHGN-----PGVQTLWSLADALG 65


>gi|308370626|ref|ZP_07422163.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308374223|ref|ZP_07435239.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308375371|ref|ZP_07443665.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308376634|ref|ZP_07439483.2| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308378845|ref|ZP_07484047.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308331404|gb|EFP20255.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308342691|gb|EFP31542.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308346576|gb|EFP35427.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308350499|gb|EFP39350.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308359101|gb|EFP47952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
          Length = 478

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             + R+ +   LT   LA+   L  +  N+ +     
Sbjct: 11 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRP 48


>gi|331088392|ref|ZP_08337309.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330408267|gb|EGG87747.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 336

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I    +++  +   LA + G+   + +K +  G       P  + I ++      +
Sbjct: 3  LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAV-----PDLQRILQMSELFGVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
             LL         T  +  E      
Sbjct: 58 TDYLLKDEMQAENITYHESTESYAEPL 84


>gi|315648384|ref|ZP_07901483.1| putative transcriptional regulator [Paenibacillus vortex V453]
 gi|315276078|gb|EFU39424.1| putative transcriptional regulator [Paenibacillus vortex V453]
          Length = 420

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
             I R+ ++  +T   LA   G+   + +K +    
Sbjct: 9  GNNIVRLRKQLGMTQEQLANGLGVSYQAVSKWENGQT 45


>gi|254562729|ref|YP_003069824.1| hypothetical protein METDI4363 [Methylobacterium extorquens DM4]
 gi|254270007|emb|CAX25993.1| Hypothetical protein METDI4363 [Methylobacterium extorquens DM4]
          Length = 70

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 1/61 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  ++  +   +         +    A +AG+     N          +R  +   + +
Sbjct: 1  MTDLTYDDVRARLSTAIREAG-SQKAFAEQAGVSRPYLNDVIAGRRPAGDRVLAALDLRR 59

Query: 61 I 61
          +
Sbjct: 60 V 60


>gi|215430004|ref|ZP_03427923.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289753196|ref|ZP_06512574.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289693783|gb|EFD61212.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
          Length = 486

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             + R+ +   LT   LA+   L  +  N+ +     
Sbjct: 19 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRP 56


>gi|213970379|ref|ZP_03398508.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
 gi|301381163|ref|ZP_07229581.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          tomato Max13]
 gi|302062403|ref|ZP_07253944.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          tomato K40]
 gi|302132576|ref|ZP_07258566.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|213924850|gb|EEB58416.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
          Length = 212

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++   + R+  +  L+   LAR  G+      + +          PS + + KI 
Sbjct: 26 DLIGPRVARNLQRLRSKRYLSMDALARLTGVSRAMLAQIESGRSV-----PSIKVLCKIA 80

Query: 63 AATNET 68
               +
Sbjct: 81 KGLKVS 86


>gi|209695276|ref|YP_002263205.1| DNA-binding transcriptional regulator HipB [Aliivibrio
          salmonicida LFI1238]
 gi|208009228|emb|CAQ79486.1| HTH-type transcriptional regulator HipB [Aliivibrio salmonicida
          LFI1238]
          Length = 83

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M  ++ K++   +  +  +HNLT + LA+K G+  ++ +  +             +++FK
Sbjct: 1  MMIYNPKQLANYLKLIRTKHNLTQTELAKKVGVKQSTLSSFENH-----PETTQLQTLFK 55

Query: 61 ILAATNET 68
          IL A    
Sbjct: 56 ILHALEVH 63


>gi|194017594|ref|ZP_03056205.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|194010866|gb|EDW20437.1| conserved domain protein [Bacillus pumilus ATCC 7061]
          Length = 71

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 5/75 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I  +    + T   LA K G+   +    +           S +  F+I      
Sbjct: 2  EIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKY-----SLSLKLAFQIARTFEV 56

Query: 68 TICQLLDLPFSDGRT 82
           +  +      +   
Sbjct: 57 DLYDVFQEVDKEEPQ 71


>gi|168763653|ref|ZP_02788660.1| putative bacteriophage CI repressor protein [Escherichia coli
          O157:H7 str. EC4501]
 gi|217329478|ref|ZP_03445558.1| putative bacteriophage CI repressor protein [Escherichia coli
          O157:H7 str. TW14588]
 gi|261227077|ref|ZP_05941358.1| hypothetical protein EscherichiacoliO157_21146 [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261254667|ref|ZP_05947200.1| hypothetical protein EscherichiacoliO157EcO_02435 [Escherichia
          coli O157:H7 str. FRIK966]
 gi|189366252|gb|EDU84668.1| putative bacteriophage CI repressor protein [Escherichia coli
          O157:H7 str. EC4501]
 gi|217317917|gb|EEC26345.1| putative bacteriophage CI repressor protein [Escherichia coli
          O157:H7 str. TW14588]
 gi|323190793|gb|EFZ76062.1| bacteriophage CI repressor helix-turn-helix domain protein
          [Escherichia coli RN587/1]
          Length = 129

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 1  MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          M     +    + E +D ++++H+L+ S LAR AG+  +S N  K+ G   +      +S
Sbjct: 1  MDMRKKQYDTPLAERLDTISQQHHLSGSDLARIAGVGRSSVNAWKKRGTISK------DS 54

Query: 58 IFKILAATNETICQLLDLPFSDGRTT 83
            KI  ATN ++  LL       R  
Sbjct: 55 AAKIAEATNVSLSWLLTGKEDTNREA 80


>gi|157690974|ref|YP_001485436.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157679732|gb|ABV60876.1| transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 71

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          +I   I  +    + T   LA K G+   +    +  
Sbjct: 2  EIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENG 38


>gi|153840613|ref|ZP_01993280.1| LexA repressor [Vibrio parahaemolyticus AQ3810]
 gi|149745725|gb|EDM56855.1| LexA repressor [Vibrio parahaemolyticus AQ3810]
          Length = 164

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 3/111 (2%)

Query: 92  LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL- 150
           LL    +   G    G    G         E     +        D   +    SM  + 
Sbjct: 56  LLEDAANDEQGLPLIGQVAAGEPILAQEHVEAHYQVDPAMFKPQADFLLRVNGESMKDIG 115

Query: 151 YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCC 201
              GD+L ++    V  G  + +     D+  K L  + G ++ L + N  
Sbjct: 116 IMDGDLLAVHKTQDVRDGQVV-VARVDDDVTVKRLERK-GSTVLLHAENEE 164


>gi|118574103|sp|Q8TZX4|Y1851_PYRFU RecName: Full=Putative HTH-type transcriptional regulatory protein
           PF1851
          Length = 315

 Score = 44.0 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
            E +  + E++  + + LA   G+   S  + ++   
Sbjct: 128 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEG 164


>gi|326386490|ref|ZP_08208113.1| putative transcriptional regulator [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326209151|gb|EGD59945.1| putative transcriptional regulator [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 204

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I  +     LT + LA   GL     ++ +R   E     PS +++  + +A   
Sbjct: 23 RLGQQIRALRRDRGLTLAHLAETTGLSLGLVSQIERGLSE-----PSVKALHLLASALGV 77

Query: 68 TICQLLDLPF 77
          T+        
Sbjct: 78 TVGWFFRDDG 87


>gi|326390755|ref|ZP_08212308.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
 gi|325993149|gb|EGD51588.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
          Length = 71

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           + +  +   LT + +A+K G+  TS+   +          PS +   KI          
Sbjct: 4  YLKKARKEAGLTQAEIAKKVGIARTSYTNIELGIKN-----PSFDVATKIKRVLRVNNDD 58

Query: 72 LL 73
          + 
Sbjct: 59 IF 60


>gi|310767097|gb|ADP12047.1| Predicted transcriptional regulator [Erwinia sp. Ejp617]
          Length = 187

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 46/162 (28%), Gaps = 10/162 (6%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST------ESI 58
           + +++   +  +    + +   LA   G+   S ++ +R          +        ++
Sbjct: 6   TEQRLARRLAELRLEKSWSLETLAELTGISRASLSRIERAETSPTATLLNRLCNAYGLTM 65

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            ++L+   +   QLL           +       +  P               G + +  
Sbjct: 66  SRLLSEVEQGGMQLLRADSQSVWHDAQSGYRRRSVSPPAQAFHAELVEARLDGGARIDY- 124

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
            +P +      I+ +       +           +GD L  +
Sbjct: 125 DMPSLAGLEQHIWMLGG---VLEFTMDERHWRLEQGDCLRFH 163


>gi|296120086|ref|ZP_06838640.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306]
 gi|295967240|gb|EFG80511.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306]
          Length = 182

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 2/140 (1%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATNETI 69
           + + ++     +T   LA  AGL  T     +R     G +  P+  +++K+  A     
Sbjct: 19  QNLRKIRRSRGVTQQALAEIAGLSRTQVCNLERNENNSGTSADPALSTVYKLALALEVPP 78

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             LL        +         +    PS + G  D           T+   +      G
Sbjct: 79  VLLLPQSADMVNSVCATTSTRAVAQKIPSATVGASDMRNTKFRRGTRTIP-EQQTLRKAG 137

Query: 130 IYAIQTQDTRHKTQDTSMLP 149
               +       +    + P
Sbjct: 138 SLVSEDDGKLETSMGEELRP 157


>gi|271965421|ref|YP_003339617.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270508596|gb|ACZ86874.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 77

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 3  SFSHKKIWEAIDRMA-ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               ++  AI  +      +T + LA + G+   +    ++         PS E  F+I
Sbjct: 1  MVKPTRVTNAIRALRFAHDEMTQAELADRVGVTRQTIIAIEQGRY-----SPSLEMAFRI 55

Query: 62 LAATNETICQLLDLPFSDGRTT 83
                 +  +   P ++G  +
Sbjct: 56 ARVFRVGLDDVFQYPDTEGDPS 77


>gi|226311800|ref|YP_002771694.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226094748|dbj|BAH43190.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 183

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 7/139 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +++ I  +  +  LT   L+ K+G   +  ++ +R          +  S+ KI     
Sbjct: 2   EHVYKKIRALRIQQELTLKDLSEKSGFSVSFLSQVERGNS-----SLAITSLQKIAECLG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I            T      +   L    S        G FP       + V      
Sbjct: 57  VPI--TYFFEVDKDVTYHTPIAKRKTLQIEGSPVKYIRIGGNFPDRALEPLLNVLPPGQT 114

Query: 127 HNGIYAIQTQDTRHKTQDT 145
            +  +    ++  +  +  
Sbjct: 115 KHVAFQHPGEEFYYVVKGC 133


>gi|168177975|ref|ZP_02612639.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182671147|gb|EDT83121.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
          Length = 130

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  L+   L  K  +   + +K +          P  E +  +      ++ +L
Sbjct: 7   LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +    +   T  +            S    
Sbjct: 62  VMDVKAKESTKTEPLVMNRFETIIDSIDRE 91


>gi|167758980|ref|ZP_02431107.1| hypothetical protein CLOSCI_01326 [Clostridium scindens ATCC 35704]
 gi|167663387|gb|EDS07517.1| hypothetical protein CLOSCI_01326 [Clostridium scindens ATCC 35704]
          Length = 197

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 140 HKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRTGD---IVAKVLISRRGRS 192
             T   SM P+   GD++++N     A     GD ++ KP+  +      K ++   G +
Sbjct: 53  VSTVGDSMNPVLHNGDVVLVNRIVYNATTPKRGDIIVFKPKGNENAHYYIKRIVGLPGET 112

Query: 193 IDLMSLNCCYPVDTVEMSDIE 213
           ++++  N  Y    ++   +E
Sbjct: 113 VEII-ENRIY----IDGEKLE 128


>gi|170722756|ref|YP_001750444.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169760759|gb|ACA74075.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 76

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +  H +    I  +     ++    A + G   T  ++ +  G       PS  +I  +
Sbjct: 8  PALQH-QFGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGAN-----PSINAIKVL 61

Query: 62 LAATNET 68
            A   +
Sbjct: 62 ADALGVS 68


>gi|67078337|ref|YP_245955.1| hypothetical protein pE33L54_0011 [Bacillus cereus E33L]
 gi|66970643|gb|AAY60617.1| hypothetical protein pE33L54_0011 [Bacillus cereus E33L]
          Length = 81

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I R  +++ +T   LA+K+G+  ++ ++  +         P+ ++  KI+ A      + 
Sbjct: 17 IARFLDKNGVTQQELAKKSGVSKSTISRICQGDAFA----PTMKNAQKIVRALKIITKKD 72

Query: 73 LDLPFSDG 80
                  
Sbjct: 73 NIHYDDFW 80


>gi|329115049|ref|ZP_08243804.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum
           DM001]
 gi|326695492|gb|EGE47178.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum
           DM001]
          Length = 531

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + ++ +R  LT + LA    + P+  N+ +R       R      + K+      + 
Sbjct: 71  GPRLRQLRQRETLTQANLAEILDISPSYLNQLERNH-----RPLPHHLLQKLCERFGLSP 125

Query: 70  CQLLDLPFSDGRTTEKKEKEIPL 92
               +   +      ++    P+
Sbjct: 126 AWFSNTKEAHTVQAMRETMADPV 148


>gi|309774841|ref|ZP_07669862.1| transcriptional regulator, XRE family [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917399|gb|EFP63118.1| transcriptional regulator, XRE family [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 103

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + ++HNLT   LA+KA +  ++ N   R         P+ E++ K +  T    
Sbjct: 4   LEKLKFLMKQHNLTEYKLAQKADVAQSTINSLFRKNN--LPTIPTLEALLKAMDMTLSEF 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                L        +   ++  L+      +   F   +  
Sbjct: 62  FYEEALMKKHELEEQNLLRKWELMTKEQKQAILKFIDLLIS 102


>gi|290511290|ref|ZP_06550659.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55]
 gi|289776283|gb|EFD84282.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55]
          Length = 154

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K   + +  +     ++    A + G   +  ++ +R G        S ++I  
Sbjct: 1  MNMTLRKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55

Query: 61 ILAATNETICQ 71
          +  A +    Q
Sbjct: 56 LANALSVEPWQ 66


>gi|255014195|ref|ZP_05286321.1| putative regulatory protein [Bacteroides sp. 2_1_7]
 gi|298374673|ref|ZP_06984631.1| regulatory protein [Bacteroides sp. 3_1_19]
 gi|298269041|gb|EFI10696.1| regulatory protein [Bacteroides sp. 3_1_19]
          Length = 82

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + +   +T + LA K G++  + +             P+ E++ KI  A    + +
Sbjct: 4  RIKEVIKEKGMTITELADKMGINRVNLSNMVNGN-------PTVETLNKIADAIGCPVTE 56

Query: 72 LLDLP 76
          L + P
Sbjct: 57 LFEQP 61


>gi|271967742|ref|YP_003341938.1| XRE family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270510917|gb|ACZ89195.1| putative transcriptional regulator, XRE family [Streptosporangium
           roseum DSM 43021]
          Length = 291

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/180 (8%), Positives = 48/180 (26%), Gaps = 11/180 (6%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+++   ++R+ E   L+ + +A + G   T+  + +      +        +  +    
Sbjct: 11  HRRLITELNRLRESSGLSRAEVAERIGSTDTTVWRYETGLTRPKP-----SDVAALTDVY 65

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             T      L        ++           P                 +  + VP +  
Sbjct: 66  GVTGEARDSLIQMARDARKRGWWHRHRQALKPGFDSYIGLEAEASVVRSYEPLVVPGLMQ 125

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN-CGDRLLIKPRTGDIVAKV 184
                 A+                   +   + ++    ++  GD + +     + V + 
Sbjct: 126 TEPYARAVIEATALTHAPS-----AVDEKVSVRVSRQQLLHGPGDPIQLVAVLDEAVLRR 180


>gi|257063582|ref|YP_003143254.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256791235|gb|ACV21905.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 76

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S +K+   I ++ E   ++   LA    LD  + N+ +          P+  ++ +I   
Sbjct: 11 SKRKLGVRIAKLREEKGMSQRRLALVLELDRVTLNRIESGTAN-----PTISTLMRIADG 65

Query: 65 TNETICQLLDL 75
           +    +L   
Sbjct: 66 LDVAFEELFHY 76


>gi|254512558|ref|ZP_05124624.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
 gi|221532557|gb|EEE35552.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
          Length = 468

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S   I   + ++      T + +AR  G+ P+  N  +        R  S + +  I  
Sbjct: 1  MSKTLIGPRLRQLRRDQKQTQAEMARNLGVSPSYINLLENNQ-----RSLSVQMLMSIAE 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPL 92
          A      +L     +      +   + P+
Sbjct: 56 AYAIDWRELTKDESTRRVADLRNVVQDPV 84


>gi|218135227|ref|ZP_03464031.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990612|gb|EEC56623.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC
           43243]
          Length = 167

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 46/162 (28%), Gaps = 15/162 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I +  +  ++T   L++++G+  ++  K +        R P  + + KI  A   +
Sbjct: 7   IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGE-----RNPKPDQLQKIAEALGIS 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   LD   +          ++         +    D    P+           I     
Sbjct: 62  VTVFLDYDINTISDVLSLVMKLNEQSPLKISADKDKDGNYIPS----------SIHMTFE 111

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                +   +    +    L  Y   D  ++    +      
Sbjct: 112 DSQINEAICSYLNCKQQMDLIAYEDNDKAVIEQQKEFYDDKI 153


>gi|217965868|ref|YP_002351546.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23]
 gi|217335138|gb|ACK40932.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23]
 gi|307569590|emb|CAR82769.1| phage transcriptional regulator, Cro/CI family [Listeria
          monocytogenes L99]
          Length = 111

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          ++ I ++AE   +  S L RK G+   S  K K          P+ E + K+    + +
Sbjct: 4  FDRIKKLAEEQKIPISELERKLGMGQNSLYKWKNQ-------KPTIEKLQKVADFFHVS 55


>gi|172041080|ref|YP_001800794.1| HTH family transcriptional regulator [Corynebacterium urealyticum
          DSM 7109]
 gi|171852384|emb|CAQ05360.1| putative transcriptional regulator (HTH_3 family)
          [Corynebacterium urealyticum DSM 7109]
          Length = 103

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   + R  E    T + LA+  G+   +   +++       R P    I  I  AT  
Sbjct: 15 EIKHRLQRAREIGGFTQTELAKIVGVSRATLANAEQGV-----RTPKRPLISAIAFATGV 69

Query: 68 TICQ 71
              
Sbjct: 70 DPRW 73


>gi|170758576|ref|YP_001785951.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169405565|gb|ACA53976.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 130

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  L+   L  K  +   + +K +          P  E +  +      ++ +L
Sbjct: 7   LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFKISLDEL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +    +   T  +            S    
Sbjct: 62  VMDVKAKESTKTEPLVMNRFETIIDSIDRE 91


>gi|153939134|ref|YP_001389968.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152935030|gb|ABS40528.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295318053|gb|ADF98430.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 130

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 8/90 (8%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  L+   L  K  +   + +K +          P  E +  +      ++ +L
Sbjct: 7   LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLTALGDFFEISLDEL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +    +      +            S    
Sbjct: 62  VMDVKAKESIKTEPLVMNRFETIIDSIDRE 91


>gi|90420986|ref|ZP_01228890.1| possible transcriptional regulator [Aurantimonas manganoxydans
          SI85-9A1]
 gi|90334764|gb|EAS48540.1| possible transcriptional regulator [Aurantimonas manganoxydans
          SI85-9A1]
          Length = 132

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F  K     +    +   +T S +A   G+     +  +  G  GR  W   + I  
Sbjct: 1  MTPFGEK-----VRAFRKERGVTQSQMAAALGVSSAYLSALE-HGRRGRPTWDLLQRIIG 54

Query: 61 ILAATNETICQLLDLPFSDGRT 82
           L    +   +L  L       
Sbjct: 55 YLNVIWDDAEELERLAELSHPK 76


>gi|328955768|ref|YP_004373101.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
 gi|328456092|gb|AEB07286.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
          Length = 72

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 1  MTSFSHKKIWEAIDRMAE-RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M     K++   I  + + R  +T    ARK  +D T +   ++         P+   + 
Sbjct: 1  MDKILQKQLGARIKSLRKTRIGMTQDAFARKCAIDETYYAAIEQG-----RHNPTFLMLK 55

Query: 60 KILAATNETICQ 71
          KI +    ++ +
Sbjct: 56 KIASGLRVSLSE 67


>gi|327467300|gb|EGF12800.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK330]
          Length = 72

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKYIRESKGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|331267170|ref|YP_004326800.1| XRE family transcriptional regulator [Streptococcus oralis Uo5]
 gi|326683842|emb|CBZ01460.1| XRE family transcriptional regulator [Streptococcus oralis Uo5]
          Length = 165

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +  + +    +   LA +  +   S +K +   +      P  E I ++      
Sbjct: 2   KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           T   LL    S+  +TE   +E    Y+    S G +     
Sbjct: 57  TTDYLLLDENSEKTSTEVILEEDKDKYYKEVKSFGLWQVIYI 98


>gi|302539648|ref|ZP_07291990.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302457266|gb|EFL20359.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces himastatinicus ATCC 53653]
          Length = 189

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 42/164 (25%), Gaps = 6/164 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF-KILAATN 66
           +I   +    ER   T + LA  +G+     N+ +R             S   ++  AT 
Sbjct: 4   RIAARVRTERERRKWTLAQLADASGVSRAMINRIERGESSPTAVVLGKLSAAFQLSVATL 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             + +        G    ++                   S  FP       +        
Sbjct: 64  LALAEGSPDDTDGGADVRRQTDAAEWYDPATGYRRRQITSPRFPAEIAEIHLPPGARVPY 123

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI-LNSAIQVNCGD 169
               +A   Q              +  GD +  L +   +  G+
Sbjct: 124 PAAAFAFIRQVVWVL----DGRLTFHDGDTVHELETGDTIELGE 163


>gi|300173268|ref|YP_003772434.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum
          LMG 18811]
 gi|299887647|emb|CBL91615.1| Transcriptional regulator, XRE family,putative [Leuconostoc
          gasicomitatum LMG 18811]
          Length = 71

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             ++++ + H ++    A+  G+   + +  +          PS     KI     +++
Sbjct: 2  LNNLEKLRKEHKVSQQDFAQYLGVTRQTISSLENGRYN-----PSILLAMKIARYFGKSV 56

Query: 70 CQLLDLPFSDGRTT 83
            +           
Sbjct: 57 ENIFIYTEESDNHE 70


>gi|295132582|ref|YP_003583258.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
 gi|294980597|gb|ADF51062.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
          Length = 102

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          I +  E   LT   LA  AG + +  +K +R   + R
Sbjct: 43 IQQAREDKGLTQEQLAELAGTNKSYISKLERNLKDIR 79


>gi|284991527|ref|YP_003410081.1| XRE family transcriptional regulator [Geodermatophilus obscurus
          DSM 43160]
 gi|284064772|gb|ADB75710.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
          DSM 43160]
          Length = 503

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++I   +        LT   LA + G   ++  + ++ G        + E + ++  A  
Sbjct: 2  QRIGMLVRDARRHRGLTQQQLAERLGTSQSAVARIEQGGQN-----LTLELLGRLSEALE 56

Query: 67 ET 68
            
Sbjct: 57 RE 58


>gi|261819794|ref|YP_003257900.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261603807|gb|ACX86293.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 78

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            I ++ ER  L+   LA  AGL  T     +R       R  S ++I +I +A   + 
Sbjct: 16 HNIKKLRERQGLSQEALADLAGLHRTYIGSVERCE-----RNISIDNIDRIASALCVSP 69


>gi|229541109|ref|ZP_04430169.1| signal peptidase I [Bacillus coagulans 36D1]
 gi|229325529|gb|EEN91204.1| signal peptidase I [Bacillus coagulans 36D1]
          Length = 183

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
                +SM+P  + GD +I+N        D ++     G    K +I   G  I+
Sbjct: 36  IVVDGSSMMPTLKNGDRMIVNKIGSPKRFDIIVFHAPEGKDYIKRVIGLPGDRIE 90


>gi|184159752|ref|YP_001848091.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183211346|gb|ACC58744.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322509665|gb|ADX05119.1| Putative HTH-type transcriptional regulator [Acinetobacter
           baumannii 1656-2]
          Length = 183

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 17/144 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +   H  +   I  + +  +L+   LA +AG+   +    +   +       S   +  I
Sbjct: 6   SVLQH--VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 58

Query: 62  LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            A        ++  P               EK+E +   L   PS S     +     G 
Sbjct: 59  AAVLGVDFRTIVSAPELKEHGLVNALAWQGEKEESKATFLASVPSRSQVELWTWSLAVG- 117

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137
             + V   +       IY ++ + 
Sbjct: 118 -ESYVAEADAEGWQELIYVLEGEL 140


>gi|254852676|ref|ZP_05242024.1| signal peptidase I [Listeria monocytogenes FSL R2-503]
 gi|300765306|ref|ZP_07075290.1| signal peptidase I [Listeria monocytogenes FSL N1-017]
 gi|258605994|gb|EEW18602.1| signal peptidase I [Listeria monocytogenes FSL R2-503]
 gi|300513989|gb|EFK41052.1| signal peptidase I [Listeria monocytogenes FSL N1-017]
          Length = 189

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSI 193
            K + TSM+P Y+ GD + +    + +  D ++        +G+   K LI   G  I
Sbjct: 43  VKVEGTSMVPTYQDGDRIFIEKISKPDRFDIIVFDEPPMIGSGEHFIKRLIGLPGDKI 100


>gi|119509672|ref|ZP_01628818.1| Transcriptional Regulator of molybdate metabolism, XRE family
           protein [Nodularia spumigena CCY9414]
 gi|119465691|gb|EAW46582.1| Transcriptional Regulator of molybdate metabolism, XRE family
           protein [Nodularia spumigena CCY9414]
          Length = 379

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 41/189 (21%), Gaps = 6/189 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                ++   + +   R  ++   LA  A +   + +  +               + K L
Sbjct: 1   MVKQDELRNKLKQTRIRLGMSQQDLANLANVTRQTISGVESGQYA--PSTTIALRLAKAL 58

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               E +  L         T          L    +  G  + +      N + T  +P 
Sbjct: 59  GCQVEDLFWLEQDLPEIAATPAYNVPLGQRLRLILAQVGNQWIAHPLIGQNAFRTEMIPA 118

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD----ILILNSAIQVNCGDRLLIKPRTG 178
                                      +   G      L   +A + +   R+       
Sbjct: 119 DGEGDRLPGTKTMVVKLLDDPGNLHQTVILAGCAPALSLWARAAERWHPNLRVHWTLDNS 178

Query: 179 DIVAKVLIS 187
                 L  
Sbjct: 179 MTALHRLRR 187


>gi|41057218|ref|NP_958243.1| hypothetical protein VWBp01 [Streptomyces phage VWB]
 gi|39656041|gb|AAR29692.1| hypothetical protein [Streptomyces phage VWB]
          Length = 127

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + I  +   + ++ S +AR  G+ P + N  K     G +R P+ E +  +  A  
Sbjct: 14 ENLAQLIKDIETTYKVSQSAIARAIGVAPATVNAWKLGKR-GSSRGPNPEKLRALHEAYP 72

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
          +   + +             E     L
Sbjct: 73 KFTEERIFAAARRAAPGPLDEDAEERL 99


>gi|52787331|ref|YP_093160.1| YvaO [Bacillus licheniformis ATCC 14580]
 gi|163119661|ref|YP_080738.2| posible transcriptional regulator [Bacillus licheniformis ATCC
           14580]
 gi|319647810|ref|ZP_08002028.1| YvaO protein [Bacillus sp. BT1B_CT2]
 gi|52349833|gb|AAU42467.1| YvaO [Bacillus licheniformis ATCC 14580]
 gi|145903171|gb|AAU25100.2| posible transcriptional regulator [Bacillus licheniformis ATCC
           14580]
 gi|317390151|gb|EFV70960.1| YvaO protein [Bacillus sp. BT1B_CT2]
          Length = 133

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+F H      + ++ ER  LT + LA  +G+     ++ +     G+   P   +I K
Sbjct: 1   MTNFGHH-----LRQLRERKKLTVNQLAMYSGVSSAGISRIEN----GKRGVPKPATIRK 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           +  A      +L+        +T ++ +      +         D  +F + 
Sbjct: 52  LADALKVPYEELMASAGYISASTVQEARSSYDSIYDIVSQYDLEDLSLFDSE 103


>gi|81428204|ref|YP_395204.1| prophage lsa1 XRE family DNA-binding protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78609846|emb|CAI54893.1| Putative prophage lsa1 DNA-binding protein, XRE family
          [Lactobacillus sakei subsp. sakei 23K]
          Length = 259

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            I ++    N++ + LA    +   + +  ++       R P  E+  K+    
Sbjct: 3  NNIRKLRLEQNVSQAELAEVLKISRQAISNYEKG-----LREPKLETWKKLADYF 52


>gi|332530500|ref|ZP_08406441.1| putative transcription regulator protein [Hylemonella gracilis
          ATCC 19624]
 gi|332040069|gb|EGI76454.1| putative transcription regulator protein [Hylemonella gracilis
          ATCC 19624]
          Length = 88

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFK 60
             +  ++   +    ++  LT +  A + G+   +++  +R     G  R     +I  
Sbjct: 5  PVRTPDQLPTLLQAFRKQAGLTQNEAALRLGVTQQTYSALERNAETVGTGRLLKLLNILG 64

Query: 61 ILAATNETICQLLDLPFSDGRTTE 84
          +         Q             
Sbjct: 65 VELVLRPITPQPPAAGDDRRHPVW 88


>gi|319938336|ref|ZP_08012732.1| hypothetical protein HMPREF9488_03568 [Coprobacillus sp. 29_1]
 gi|319806519|gb|EFW03181.1| hypothetical protein HMPREF9488_03568 [Coprobacillus sp. 29_1]
          Length = 206

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 4/100 (4%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
             + ++HNL+    A++ G+   +  + +          PS   I K+     ++  ++L
Sbjct: 8   KNIRKQHNLSKREFAKQLGISAATIVRIENGITV----SPSKNLISKLAYYLQKSEVEIL 63

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
               S      +         +          S + P G 
Sbjct: 64  QDIQSQPFFENQTAFLYGNYLYIQGWFIQNLYSHINPNGE 103


>gi|317498279|ref|ZP_07956578.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|316894488|gb|EFV16671.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 159

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 5/77 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + I ++    +LT      + G+   +  + +    E     P   S+  I         
Sbjct: 3  KRIKKLRRELDLTQEKFGARIGVKGNTVAQWESGRNE-----PPDSSLAFICREFGVMDE 57

Query: 71 QLLDLPFSDGRTTEKKE 87
           L              E
Sbjct: 58 WLRFGTGPMYAPEPTTE 74


>gi|307591326|ref|YP_003900125.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306986180|gb|ADN18059.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 86

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
            AI +  +  NLT   LA + GLD T     +   I    R  + E + K
Sbjct: 16 GRAIQQRRKELNLTQENLAHRTGLDRTYIANIETGKINISLR--NIEKLAK 64


>gi|307127275|ref|YP_003879306.1| helix-turn-helix domain-containing protein [Streptococcus
           pneumoniae 670-6B]
 gi|295980949|emb|CBJ57197.1| putative transcriptional regulator [Streptococcus pneumoniae]
 gi|306484337|gb|ADM91206.1| helix-turn-helix domain protein [Streptococcus pneumoniae 670-6B]
          Length = 158

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSHGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 117 DLSDLIHTNIYLVETFDE 134


>gi|227872217|ref|ZP_03990579.1| XRE family transcriptional regulator [Oribacterium sinus F0268]
 gi|227841940|gb|EEJ52208.1| XRE family transcriptional regulator [Oribacterium sinus F0268]
          Length = 99

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          H  I   ID   ++  +T   LA   G+     +K +R       R    + + K
Sbjct: 29 HIVIQAMIDA-RKKSGMTQKELAEITGIAQGDISKLERGSANPSIRT--LQRLAK 80


>gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176]
 gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176]
          Length = 269

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 10/67 (14%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +  S       +  + +   L+   LA K  +   + +K ++         P +E +  I
Sbjct: 100 SMLSQ-----NLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSV-----PDSEMLISI 149

Query: 62  LAATNET 68
                  
Sbjct: 150 SEVLETP 156


>gi|239916764|ref|YP_002956322.1| predicted transcriptional regulator [Micrococcus luteus NCTC
          2665]
 gi|281414779|ref|ZP_06246521.1| predicted transcriptional regulator [Micrococcus luteus NCTC
          2665]
 gi|239837971|gb|ACS29768.1| predicted transcriptional regulator [Micrococcus luteus NCTC
          2665]
          Length = 488

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  + ++  LT   LA + G+  +  +  +        R P    + +I       
Sbjct: 18 LGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENA-----RREPRLSLVQRIAEVLGVP 72

Query: 69 ICQ 71
          +  
Sbjct: 73 VED 75


>gi|172058590|ref|YP_001815050.1| helix-turn-helix domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991111|gb|ACB62033.1| helix-turn-helix domain protein [Exiguobacterium sibiricum 255-15]
          Length = 294

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 8/145 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIF 59
           M  F+  +I  A+ R+ ++HNLT   LA   G+      +K +          P+ + ++
Sbjct: 1   MDQFTSPQIGLALRRLRKKHNLTQKDLAN--GICSQAEISKIESGT-----HSPTVDLLY 53

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +       I   LD            E  +         S       +  +      + 
Sbjct: 54  ALSRRLQVPINTFLDHTNYRESLKILDENLLVRFRNSEFQSIYQETQKMINSSPLDRELN 113

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQD 144
           +      +   Y ++  D R     
Sbjct: 114 LLVRYFYYLSSYRLKKIDYRTCIIG 138


>gi|120435188|ref|YP_860874.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
 gi|117577338|emb|CAL65807.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
          Length = 64

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 17/38 (44%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
            +  +   +N+T + LA + G+   + N  ++   + 
Sbjct: 3  NRLKVLRAEYNMTQAQLADETGVSRQTINAIEKGKFDP 40


>gi|146298916|ref|YP_001193507.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146153334|gb|ABQ04188.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
           UW101]
          Length = 129

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 7/104 (6%)

Query: 1   MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M++ +    I   I R+ E  ++    LA   G+   S +  +             E + 
Sbjct: 1   MSTLTKPNHIGRKISRIRELRDMKQEALAYALGMSQQSISIIENSETVDE------EKLK 54

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            I      +   + +                  +    + S  F
Sbjct: 55  AIAEVLGVSAEGIKNFSEEAVLNIIGNTYHDSNVVNGNAYSCNF 98


>gi|37526736|ref|NP_930080.1| hypothetical protein plu2846 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36786168|emb|CAE15220.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 93

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 7  KKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++ +  +D +    ++  LT + +A + G   T+  + +     G  + PS  ++ K  A
Sbjct: 24 EQEFALLDELLAARKKAGLTQAQVAERMGTKATAITRLESRLASG-TQGPSYNTLKKYAA 82

Query: 64 ATN 66
          A  
Sbjct: 83 AVG 85


>gi|18978223|ref|NP_579580.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638]
 gi|18894036|gb|AAL81975.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638]
          Length = 316

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
            E +  + E++  + + LA   G+   S  + ++   
Sbjct: 129 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEG 165


>gi|315640707|ref|ZP_07895809.1| signal peptidase IB [Enterococcus italicus DSM 15952]
 gi|315483462|gb|EFU73956.1| signal peptidase IB [Enterococcus italicus DSM 15952]
          Length = 182

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 110 PTGNKWNTVGVPEIRSPHNGIYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCG 168
           P                      I+       + +  SM    +K D +++ +   ++  
Sbjct: 4   PVKVDRFWFYFKFSLLALAIALVIRGFLLIPIQVEGKSMQLTLKKNDWVVVENVTTIHRF 63

Query: 169 DRLLIKPRTGDIVAKVLISRRGRSI 193
           D ++ +   GD   K +I   G SI
Sbjct: 64  DIVVFRLADGDTYIKRVIGLPGESI 88


>gi|298492312|ref|YP_003722489.1| XRE family molybdate metabolism transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298234230|gb|ADI65366.1| transcriptional regulator of molybdate metabolism, XRE family
           ['Nostoc azollae' 0708]
          Length = 377

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/138 (9%), Positives = 34/138 (24%), Gaps = 2/138 (1%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                 +   +  +  R  ++   LA  A +   + +  +            +  + K L
Sbjct: 1   MKQENHLRNNLKSIRTRLGMSQQELANLAAVTRQTISGVESGLYA--PSVAISLRLAKAL 58

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               E +  L            K    +  L    +  GG + +      + +    +P 
Sbjct: 59  GCQVEELFWLEHDLPQIEAVLTKPVNNLQQLRVSLARVGGQWIAYPLVGKDAFRQDMIPA 118

Query: 123 IRSPHNGIYAIQTQDTRH 140
                    + +      
Sbjct: 119 DGEGERLTDSNKLNVRLL 136


>gi|294615154|ref|ZP_06695038.1| transcription regulator [Enterococcus faecium E1636]
 gi|312905108|ref|ZP_07764229.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|291591974|gb|EFF23599.1| transcription regulator [Enterococcus faecium E1636]
 gi|310631498|gb|EFQ14781.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|315579064|gb|EFU91255.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 71

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  +   L+ + LA+K  +     +  +      + 
Sbjct: 5  SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 44


>gi|258615577|ref|ZP_05713347.1| hypothetical protein EfaeD_07687 [Enterococcus faecium DO]
 gi|293560245|ref|ZP_06676744.1| transcription regulator [Enterococcus faecium E1162]
 gi|294620833|ref|ZP_06700037.1| transcription regulator [Enterococcus faecium U0317]
 gi|314947723|ref|ZP_07851130.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|291599618|gb|EFF30631.1| transcription regulator [Enterococcus faecium U0317]
 gi|291605789|gb|EFF35224.1| transcription regulator [Enterococcus faecium E1162]
 gi|295113443|emb|CBL32080.1| Predicted transcriptional regulators [Enterococcus sp. 7L76]
 gi|313645703|gb|EFS10283.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|315030236|gb|EFT42168.1| helix-turn-helix protein [Enterococcus faecalis TX4000]
 gi|315144773|gb|EFT88789.1| helix-turn-helix protein [Enterococcus faecalis TX2141]
 gi|315158696|gb|EFU02713.1| helix-turn-helix protein [Enterococcus faecalis TX0312]
          Length = 71

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  +   L+ + LA+K  +     +  +      + 
Sbjct: 5  SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 44


>gi|238757889|ref|ZP_04619071.1| Prophage repressor protein [Yersinia aldovae ATCC 35236]
 gi|238703874|gb|EEP96409.1| Prophage repressor protein [Yersinia aldovae ATCC 35236]
          Length = 72

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 155 DILILNSAIQVNCGDRLL-IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE 208
            +++++   +   G+ ++       +   K LI   G    L  LN  Y +  + 
Sbjct: 1   MMILVDQEKEPMPGNFVIAKLTDDNEATFKKLIVDAGIKY-LKPLNPAYRLIELN 54


>gi|225175587|ref|ZP_03729581.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus
          AHT 1]
 gi|225168916|gb|EEG77716.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus
          AHT 1]
          Length = 121

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + I  + E H  T    A+  G++ +  ++ +        R    E + K  +  + T
Sbjct: 6  GQRIKLLREEHGYTQRDFAKVIGINNSVLSRIEAGI-----RPVEDELLSKFASFFHCT 59


>gi|158320882|ref|YP_001513389.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158141081|gb|ABW19393.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 125

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + + +N+T   LA K GL  T+    +          P  E++  I    + T  
Sbjct: 9  ERLKELRKENNMTQQELADKLGLVRTAIANYETGRTV-----PDAETLNLIANILSTTTD 63

Query: 71 QLLDLPFSDGRTTEKKEKEIPL 92
           LL       +   K      +
Sbjct: 64 YLLGRANYIPKEKNKPSSTDII 85


>gi|149004216|ref|ZP_01829008.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149012995|ref|ZP_01833884.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|149019646|ref|ZP_01834965.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|225856698|ref|YP_002738209.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031]
 gi|303255604|ref|ZP_07341655.1| transcriptional regulator [Streptococcus pneumoniae BS455]
 gi|303260497|ref|ZP_07346465.1| hypothetical protein CGSSp9vBS293_00385 [Streptococcus pneumoniae
           SP-BS293]
 gi|303262854|ref|ZP_07348791.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265324|ref|ZP_07351234.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae
           BS397]
 gi|303266531|ref|ZP_07352418.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae
           BS457]
 gi|303268350|ref|ZP_07354146.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae
           BS458]
 gi|147757811|gb|EDK64823.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147763148|gb|EDK70089.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|147931021|gb|EDK82001.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|225726271|gb|ACO22123.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031]
 gi|301801880|emb|CBW34601.1| putative DNA-binding protein [Streptococcus pneumoniae INV200]
 gi|302597460|gb|EFL64555.1| transcriptional regulator [Streptococcus pneumoniae BS455]
 gi|302636052|gb|EFL66550.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638409|gb|EFL68876.1| hypothetical protein CGSSpBS293_00385 [Streptococcus pneumoniae
           SP-BS293]
 gi|302642071|gb|EFL72422.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae
           BS458]
 gi|302643982|gb|EFL74242.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae
           BS457]
 gi|302645189|gb|EFL75426.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae
           BS397]
          Length = 158

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 6/134 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHK 141
           +    IQT     +
Sbjct: 117 DLSDLIQTNIYLVE 130


>gi|110637230|ref|YP_677437.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110279911|gb|ABG58097.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 79

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
           K+I   +  + E    + S LAR    D  +  K +   +  
Sbjct: 15 QKRIGLRVIELREHKGWSQSDLARACNKDRQAIEKIESGKVNP 57


>gi|15596556|ref|NP_250050.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9947301|gb|AAG04748.1|AE004565_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 218

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 16/180 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+  +  L+   LAR A +        +   +       S  ++ +I AA  
Sbjct: 43  EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 97

Query: 67  ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                L+  P +D              E    LL   P+       +     G     V 
Sbjct: 98  VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 155

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRT 177
            P+       +  I+ +           +                VN GD   ++   R 
Sbjct: 156 EPDAAGWREIVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDGDEVVRFTRN 215


>gi|313621813|gb|EFR92516.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria
          innocua FSL J1-023]
          Length = 111

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          ++ I ++AE   +  S L RK G+   S  K K          P+ E + K+    + +
Sbjct: 4  FDRIKKLAEEQKIPISELERKLGMGQNSLYKWKNQ-------KPTIEKLQKVADFFHVS 55


>gi|295107201|emb|CBL04744.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 148

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/105 (8%), Positives = 28/105 (26%), Gaps = 4/105 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +  +     LT   LA++  +   + ++ +            T+ I + L      
Sbjct: 3   LKDILPELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDM--TKLIARELDVPITE 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           + ++ D              +              +    +  G 
Sbjct: 61  LLEMPDHYCQSCGMMFTGSGQHGHE--ADGTETEDYCRWCYEDGA 103


>gi|289705735|ref|ZP_06502119.1| helix-turn-helix domain-containing protein [Micrococcus luteus
          SK58]
 gi|289557575|gb|EFD50882.1| helix-turn-helix domain-containing protein [Micrococcus luteus
          SK58]
          Length = 476

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  + ++  LT   LA + G+  +  +  +        R P    + +I       
Sbjct: 6  LGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENA-----RREPRLSLVQRIAEVLGVP 60

Query: 69 ICQ 71
          +  
Sbjct: 61 VED 63


>gi|218133297|ref|ZP_03462101.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992170|gb|EEC58174.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC
           43243]
          Length = 154

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 11/131 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +     ++ M +    T   LA K G++  S ++  +       R P+  +I  I     
Sbjct: 34  ETFISRLEEMRKEKGFTQRELASKVGVNEVSMSRYIKGE-----RVPTVTTIVSIAQVLG 88

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            ++  L+       R                                 W     P     
Sbjct: 89  ASVDYLVGTSNVKKRQNNADRIRNMSDEELAQFLCKVKSDYQ------WMEHEFPSEEEH 142

Query: 127 HNGIYAIQTQD 137
                 +Q++ 
Sbjct: 143 SEWEEWLQSEA 153


>gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916]
 gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916]
          Length = 170

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  +    NL+   LA K G+  ++ +K +        R   T+ + KI  A + 
Sbjct: 2   EISEKLKDLRTFKNLSTYDLAEKTGIPQSTISKLENGN-----RKIDTDILQKIADAMDV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            I              +K   E    +     +   
Sbjct: 57  PIDIFFQKQSPSEILGKKVTYEKLKEWDDKYTNVVE 92


>gi|188579608|ref|YP_001923053.1| peptidase S24 and S26 domain protein [Methylobacterium populi
           BJ001]
 gi|179343106|gb|ACB78518.1| peptidase S24 and S26 domain protein [Methylobacterium populi
           BJ001]
          Length = 154

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLL 172
             + + +P    P+             +    SM       GD+  ++ +++   G  ++
Sbjct: 41  VEDALELPRWLVPN------PPATFLWRIAGDSMRDAGIFDGDLACVDRSLKPGHGSVVV 94

Query: 173 IKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIARI 218
                G++  K ++   G    L   N   PV  + E+++++    +
Sbjct: 95  AAVD-GEMSIKRMV-VEGNRARLAFDNADLPVYALEELAEVDVWGVV 139


>gi|157150768|ref|YP_001451299.1| Cro/CI family transcriptional regulator [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075562|gb|ABV10245.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 167

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + +  + +    +   L+ +  +   S +K +          P  E I ++      
Sbjct: 2   KLADKLFELRKEKGWSQEKLSEQINVSRQSISKWESGQA-----LPELEKIVELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           T   LL              ++    Y+    S GF+         
Sbjct: 57  TTDYLLLEDSDKPEIKPVLSEDEKDRYYKEVKSYGFWQVLYIFVSA 102


>gi|120400369|gb|ABM21424.1| transcriptional regulator [Lactobacillus johnsonii]
 gi|120400393|gb|ABM21447.1| transcriptional regulator [Lactobacillus johnsonii]
          Length = 374

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 12/168 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +        +T + LA K G+     ++ +R   E     PS E+  KI++A    +
Sbjct: 5   GTRLKEARYFRKMTITDLAEKIGVTKQMISRYERETGE-----PSLETFQKIVSALKFPV 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSPHN 128
               +   ++  +     +              F+        + + T +  PE+     
Sbjct: 60  NFFTESDSNNFCSQGTFYRSRLTATQTEKRPSEFYQKAACYIRDYFETMIEFPELPKFDR 119

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
              + +      +               L+         G  + I   
Sbjct: 120 SFDSPEEAANYIRKIWRLGATPIPNMIRLL------EEHGMIIYIAEN 161


>gi|88802521|ref|ZP_01118048.1| putative prophage LambdaCh01, repressor protein [Polaribacter
           irgensii 23-P]
 gi|88781379|gb|EAR12557.1| putative prophage LambdaCh01, repressor protein [Polaribacter
           irgensii 23-P]
          Length = 245

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/173 (8%), Positives = 44/173 (25%), Gaps = 12/173 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I ++     L+    A    L   +    +    E     P  +++ K+    + +I
Sbjct: 5   GKNIKKIRVIKGLSQQVFAELFSLKRATLGAYEEGRSE-----PKIDTLIKVANYFSISI 59

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L    +  +     E     +      S                     +       
Sbjct: 60  DDFLTKEITVNQLLRFNEGITTDINQIVKASFKEIPFVNSLNSA-----FFVDNFKRSQS 114

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             ++     R   +       +   D+  ++    +   D ++ + +  D + 
Sbjct: 115 YNSLP--TIRVPVEGDLDFLAFMVKDLFRVSDEEGLFPNDVVIGESKNIDALF 165


>gi|332798117|ref|YP_004459616.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332695852|gb|AEE90309.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 253

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++     +T + LA KAG+      + +   +E     PS +++ KI AA + + C  
Sbjct: 141 IKKIRCERKITQAELAEKAGVSTGLIGQIESGKVE-----PSIKTLEKIAAALSLSPCFF 195

Query: 73  LDLPF 77
           +    
Sbjct: 196 VSEDE 200



 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           I   I  + +  NL+ S LA K G+ P+   + +             +SI K L 
Sbjct: 72  IGAKIALIRQEKNLSLSELAEKVGISPSYLCQIESGRAMPALST--LKSIAKALD 124



 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          I  + ++ N+T   LA++AGL  +  ++ +        + PS E+I K+  A N + 
Sbjct: 7  IRSLRQKRNMTLQDLAQQAGLSVSYLSEIELG-----KKQPSLETIDKLAQALNISR 58


>gi|332157993|ref|YP_004423272.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2]
 gi|331033456|gb|AEC51268.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2]
          Length = 192

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 43/156 (27%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ +   +T   LARKAG+      K +   ++ R    +      +         + 
Sbjct: 13  IKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRALLECQKTRVTAKN 72

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           +          + K +++  L    + S           G+    + V +     +    
Sbjct: 73  IMSSPIISVGPDDKIEKVVRLMERYNISQVPVMDKDKVIGSITERLLVRKSLEEEDIYSK 132

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
              +         S          L+ +    +  G
Sbjct: 133 KAKEIMEEPFPSVSEDEDLEVIKYLLEDHQAVIVLG 168


>gi|330822028|ref|YP_004350890.1| Transcriptional regulator, XRE family protein [Burkholderia
          gladioli BSR3]
 gi|327374023|gb|AEA65378.1| Transcriptional regulator, XRE family protein [Burkholderia
          gladioli BSR3]
          Length = 191

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + +R  LT   +A  AG+     ++ +R         PS +S+  I  A   +
Sbjct: 15 IGGRIRALRQRLKLTLDEVAVMAGISKPFLSQVERGRAT-----PSLQSLVGIARALGVS 69

Query: 69 ICQL 72
          +   
Sbjct: 70 MQYF 73


>gi|311900507|dbj|BAJ32915.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 192

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 41/132 (31%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  +      +   LA +A L  +S ++ +        R  + + +  +  A + T
Sbjct: 12  VRKRIRALRVAQGWSLEELAARANLSQSSLSRIENGQ-----RRLALDQLVTLANALDTT 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + QL++    D   +   +    ++ +P  G  G        T    +            
Sbjct: 67  LDQLVETAAEDVVISPTVDGPHGIMRWPVKGDPGISVVRQRMTEPPPDNPARMRAHPGRE 126

Query: 129 GIYAIQTQDTRH 140
            +  +       
Sbjct: 127 WLVVLSGTAILM 138


>gi|312126655|ref|YP_003991529.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776674|gb|ADQ06160.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 77

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  +  +  L+   LA+ AG+  ++    +        R P+ +++ ++  A   +
Sbjct: 2  VGKKLRELRIQKRLSQQQLAKIAGVPQSTIWYIESEN-----RNPTIKTMKRLATALGVS 56

Query: 69 ICQL 72
          I + 
Sbjct: 57 IEEF 60


>gi|302337605|ref|YP_003802811.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM
           11293]
 gi|301634790|gb|ADK80217.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM
           11293]
          Length = 376

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/112 (9%), Positives = 31/112 (27%), Gaps = 5/112 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   I R+ +    + + L+ + G+   + +       E     P + ++ K   A  
Sbjct: 4   EDIGANIRRIMKIKGYSIAKLSARMGVGTATISNILNGRSE-----PKSSTLLKFCNALE 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
             +  +L           +    +            +  +      N    +
Sbjct: 59  VGLPDILADAPKLQSLRFRTNSNLSAREKAERDQMLYETAQWLKNYNTLEDL 110


>gi|295135771|ref|YP_003586447.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
 gi|294983786|gb|ADF54251.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
          Length = 152

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 8/91 (8%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          T  SH  I   I R+ E   +    LA + G+   S +  ++            E + K+
Sbjct: 17 TKTSH--IGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSE------HIEDEKLEKV 68

Query: 62 LAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
                +   + +              E   
Sbjct: 69 AKVLGVSKEAIKNFSEEKAINFFNSIYENNF 99


>gi|238916357|ref|YP_002929874.1| hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC
          27750]
 gi|238871717|gb|ACR71427.1| Hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC
          27750]
          Length = 217

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I        LT   +A   G+   + +  +         +P   S+ K+    + 
Sbjct: 4  DIGCKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 58

Query: 68 T 68
          +
Sbjct: 59 S 59


>gi|237741715|ref|ZP_04572196.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256845043|ref|ZP_05550501.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|294785671|ref|ZP_06750959.1| DNA-binding protein [Fusobacterium sp. 3_1_27]
 gi|229429363|gb|EEO39575.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256718602|gb|EEU32157.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|294487385|gb|EFG34747.1| DNA-binding protein [Fusobacterium sp. 3_1_27]
          Length = 182

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I R+ +  NL+   LA+ + +  +   + +R         P+  +++KI      +
Sbjct: 8   VSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGN-----PTLSTLWKIANGMQVS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L+  P    + T+  E E  L       +   F             + V +  S  +
Sbjct: 63  FNTLIAQPKLPYKVTKLAEIEPILDMNGELKNYSLFSD--IENNFSVYQIEVGKEISWIS 120

Query: 129 GIYAIQTQDTRHKTQD 144
             +   T +     Q 
Sbjct: 121 EAHLHGTAEFVIVIQG 136


>gi|228991352|ref|ZP_04151308.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM
          12442]
 gi|228997428|ref|ZP_04157047.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17]
 gi|229005073|ref|ZP_04162797.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4]
 gi|228756175|gb|EEM05496.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4]
 gi|228762304|gb|EEM11231.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17]
 gi|228768370|gb|EEM16977.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM
          12442]
          Length = 181

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + +  + E   L+   LA+ A + P+  ++ +R       +      + K L     
Sbjct: 5  NIGKKVKELREYKELSMRELAKMAEITPSMLSQIERGLANPSIQTLKL--LAKALEVPTF 62

Query: 68 TI 69
          + 
Sbjct: 63 SF 64


>gi|107022224|ref|YP_620551.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689169|ref|YP_834792.1| XRE family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105892413|gb|ABF75578.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU
           1054]
 gi|116647258|gb|ABK07899.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
           HI2424]
          Length = 206

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA ++G+  +  +  +R         P+   + K+ A  
Sbjct: 15  NERIARRVRELRTVRGYTLDALAARSGVSRSMISLIERASA-----SPTAVVLDKLAAGL 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEI 123
             ++  L      D        +     +  P+      +     +P+  +   V  P  
Sbjct: 70  GVSLAGLFGGDRDDAPAQPLARRAQQAEWRDPASGYVRRNLSPAGWPSPIQLVEVDFPPG 129


>gi|90962310|ref|YP_536226.1| DNA-binding protein [Lactobacillus salivarius UCC118]
 gi|90821504|gb|ABE00143.1| DNA-binding protein [Lactobacillus salivarius UCC118]
          Length = 203

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
           KKI + I +  +  + T + LA+K G+   + +K +      
Sbjct: 3  QKKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIP 45


>gi|15600180|ref|NP_253674.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107104087|ref|ZP_01368005.1| hypothetical protein PaerPA_01005160 [Pseudomonas aeruginosa PACS2]
 gi|116053135|ref|YP_793456.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894084|ref|YP_002442953.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254238300|ref|ZP_04931623.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719]
 gi|254244126|ref|ZP_04937448.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192]
 gi|296391830|ref|ZP_06881305.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110019|ref|ZP_07795924.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9951271|gb|AAG08372.1|AE004911_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115588356|gb|ABJ14371.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170231|gb|EAZ55742.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719]
 gi|126197504|gb|EAZ61567.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192]
 gi|218774312|emb|CAW30129.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310882426|gb|EFQ41020.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 199

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 18/164 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +R  LT + LA ++ L     ++ +R        +PS  ++F I  +   T
Sbjct: 20  LGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLA-----YPSIPALFNIARSLGVT 74

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125
             Q      +     +                 G  D  + P  ++   +     P    
Sbjct: 75  -IQWFFASEAAVDPADAGYVVRRNTRMSVHYEDGIIDELLTPQPSRQLEILHSRFPPGTY 133

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                Y+ + ++  +              ++ + +   Q+  GD
Sbjct: 134 -SQQSYSHEGEEAGYILSG--------IFELWVGDRHFQLREGD 168


>gi|330863911|emb|CBX74000.1| uncharacterized HTH-type transcriptional regulator ydcN [Yersinia
           enterocolitica W22703]
          Length = 206

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/145 (8%), Positives = 36/145 (24%), Gaps = 6/145 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   I   +  +      + +  A + G+      + +R         P+  +++K
Sbjct: 19  MKELTR-HIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGES-----SPTVATLWK 72

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I +  N +  Q L+ P +      +                                + +
Sbjct: 73  IASGLNVSFSQFLETPPAQSAALHRHGLLTTFNSETSGMRVVPLFPYDATLRMDMFVIDL 132

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145
                  +  +     +     +  
Sbjct: 133 DPGGCSESTPHEAGVIEHVIVIEGE 157


>gi|332161859|ref|YP_004298436.1| putative DNA-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666089|gb|ADZ42733.1| putative DNA-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 188

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/145 (8%), Positives = 36/145 (24%), Gaps = 6/145 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +   I   +  +      + +  A + G+      + +R         P+  +++K
Sbjct: 1   MKELTR-HIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGES-----SPTVATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I +  N +  Q L+ P +      +                                + +
Sbjct: 55  IASGLNVSFSQFLETPPAQSAALHRHGLLTTFNSETSGMRVVPLFPYDATLRMDMFVIDL 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDT 145
                  +  +     +     +  
Sbjct: 115 DPGGCSESTPHEAGVIEHVIVIEGE 139


>gi|306835386|ref|ZP_07468407.1| DNA-binding protein [Corynebacterium accolens ATCC 49726]
 gi|304568752|gb|EFM44296.1| DNA-binding protein [Corynebacterium accolens ATCC 49726]
          Length = 437

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             I  + ++  LT   +A+K GL  +  N+ +     
Sbjct: 7  GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRP 44


>gi|303242146|ref|ZP_07328636.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302590333|gb|EFL60091.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 121

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43
          M + S KK+ E + ++ E   LT   L    G++     + +R
Sbjct: 1  MKTLSAKKLAETVTKLREEKGLTKEELGTLTGINRIMIGRIER 43


>gi|257415438|ref|ZP_05592432.1| predicted protein [Enterococcus faecalis AR01/DG]
 gi|257157266|gb|EEU87226.1| predicted protein [Enterococcus faecalis ARO1/DG]
          Length = 250

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDP-TSFNKSKRFGIEGRNRWPSTESIFKI 61
            + K++   +    ++   T   LA K GL   ++ +  +        R+   + I K 
Sbjct: 20 KITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRY--LKKIAKA 77

Query: 62 LAATNET 68
             T + 
Sbjct: 78 CDTTGDW 84


>gi|229160813|ref|ZP_04288804.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803]
 gi|228622661|gb|EEK79496.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803]
          Length = 145

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + + R+ E    +   +A+K G+   +  K +          P  E++  +    N T
Sbjct: 3  LGQQLKRLRESQGFSQEDVAKKVGITRQAVYKWENDKS-----CPDIENLILLSEMYNVT 57

Query: 69 ICQLLDLPFSDGRTTEKKE 87
          + +L+    +        E
Sbjct: 58 LDELIKGNQNLKEKIHIDE 76


>gi|227502798|ref|ZP_03932847.1| transcriptional regulatory protein [Corynebacterium accolens ATCC
          49725]
 gi|227076528|gb|EEI14491.1| transcriptional regulatory protein [Corynebacterium accolens ATCC
          49725]
          Length = 437

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             I  + ++  LT   +A+K GL  +  N+ +     
Sbjct: 7  GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRP 44


>gi|261366423|ref|ZP_05979306.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|282571685|gb|EFB77220.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
          Length = 200

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 18/44 (40%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           ++++I + I  +    N+T + LA+  G    +    +     
Sbjct: 3  LTNEQIGQRIKEVRTEKNITQTQLAKFLGKSLRTVQSYESGESR 46


>gi|259908724|ref|YP_002649080.1| Repressor protein CI [Erwinia pyrifoliae Ep1/96]
 gi|224964346|emb|CAX55855.1| Repressor protein CI [Erwinia pyrifoliae Ep1/96]
          Length = 196

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 33/218 (15%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M   S     E +    ++  L+  S LA+ AG++ +  +K      E            
Sbjct: 1   MKKLS-----ERLHDAMQKTGLSSQSELAKLAGVNQSIISKILSGKNETSKYSG------ 49

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           ++ AA   +   L++   +        ++                      TG   + V 
Sbjct: 50  RLAAALGISADWLINGAGAMEGGEGPLQRIDTSRLVS----------VWDETGKTADVVS 99

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
             +    +  +Y ++             +    +G +++++  I       ++     G 
Sbjct: 100 WHDSVPDYFRVYLMKKNT---------GIDKAPEGALILVDPKISAGNNQLVVT-NLRGI 149

Query: 180 IVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDIEWIA 216
           I A   +    +   L   +   P   + + S IE +A
Sbjct: 150 IAAYRFLEGGAKYGFLDVDDPRIPPFEITDPSCIEGVA 187


>gi|222084212|ref|YP_002542738.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221721660|gb|ACM24816.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 121

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT F      EA+ ++  R  ++   +A    + P   +  +     G+   P+ + + +
Sbjct: 1  MTPF-----GEAVRKLRARKGVSQKEMAAALNVTPAYLSALE----HGKRGTPTFDLLQR 51

Query: 61 ILAATNETICQ 71
          I    N    +
Sbjct: 52 IAGYFNIIWDE 62


>gi|297196426|ref|ZP_06913824.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722252|gb|EDY66160.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 529

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 29/127 (22%), Gaps = 4/127 (3%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ER   T   LAR+ G+  ++ ++            P  E + +I         +L
Sbjct: 19  LSELRERSGRTYGSLARRVGVGASTLHRYCSGRTVPMEFAP-VERLARIC---GCRGDEL 74

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           + L          +                       P  +       P+          
Sbjct: 75  VALHRLWVLADAARGTRQERAARTGVPDKEGDAEAAGPEDDHDGEAPGPDDDGDAEAPGP 134

Query: 133 IQTQDTR 139
                  
Sbjct: 135 DDGDAEA 141


>gi|169829608|ref|YP_001699766.1| SinR protein [Lysinibacillus sphaericus C3-41]
 gi|168994096|gb|ACA41636.1| SinR protein [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 38/148 (25%), Gaps = 10/148 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   E I    +   LT    A++ G+     ++ ++     +N+ PS E ++KI    +
Sbjct: 34  ETFGEVISNARKEKKLTLREAAKRIGISHPYLSQLEKN----KNKNPSFEILYKIAYELD 89

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L  L   D   T        L       +                 + +      
Sbjct: 90  VSFGYLNLLADIDTGFTVDSFNASQLQLIKDLKNESLKCKNYN------ELLEMYSSYFE 143

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKG 154
                +              +    +  
Sbjct: 144 TEDSKSGGEYLFNFFVTTEEIKNNIKNQ 171


>gi|157961683|ref|YP_001501717.1| XRE family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157846683|gb|ABV87182.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC
           700345]
          Length = 209

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/197 (9%), Positives = 52/197 (26%), Gaps = 27/197 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           + K +    D        + +  A+  G++ ++ ++  R  I     +       K+  +
Sbjct: 11  TQKAVRRVWDEFKSETGTSQAKAAKALGINQSALSQYLRGEIPLNTDF--LAKFAKLTKS 68

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
             +++        +             L              G F     ++   +P   
Sbjct: 69  DLDSLGITPATVGAMPLELRYTLSGRRLRDTSALVPSPTSFEGCFGIVVDYDDFALPRDS 128

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI-LNSAIQVNCGDRLLIKPRTGDIV-- 181
                                      ++ D +I ++   ++  G      P   +++  
Sbjct: 129 IMIVD-----------------ETTTIKEYDSVILVSRDDRMINGTIRYT-PDGWEVLEP 170

Query: 182 ----AKVLISRRGRSID 194
               A+  + R   +I 
Sbjct: 171 HARGARRFVVRGDDTIY 187


>gi|86739175|ref|YP_479575.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566037|gb|ABD09846.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 325

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + I        ++   LA++AG+     ++ +R       R PS E + +I  A   
Sbjct: 71  DLGDFIRDQRHSAQISLRQLAKQAGVSNPYLSQIERG-----LRRPSAEILQQIAKALRI 125

Query: 68  T 68
           +
Sbjct: 126 S 126


>gi|66391410|ref|YP_238713.1| ORF184 [Staphylococcus phage Twort]
 gi|62637340|gb|AAX92451.1| ORF184 [Staphylococcus phage Twort]
          Length = 70

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          + R+      T   LA++ G++ ++ +  ++       R  +  ++ KIL   +  + +
Sbjct: 9  LQRIRIEKGYTLRSLAKELGVNYSTISYWEQGLKT--PRSGNKINLEKILETPSHILFE 65


>gi|83720726|ref|YP_443769.1| hypothetical protein BTH_I3276 [Burkholderia thailandensis E264]
 gi|83654551|gb|ABC38614.1| gp48 [Burkholderia thailandensis E264]
          Length = 105

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            AI        LT + +A + G   ++ ++ +      +   PS  ++ K  AA  
Sbjct: 42 LRAILSARRDAGLTQAQIAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97


>gi|30263168|ref|NP_845545.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47528533|ref|YP_019882.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186017|ref|YP_029269.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|52142313|ref|YP_084521.1| helix-turn-helix family DNA-binding protein [Bacillus cereus
          E33L]
 gi|65320496|ref|ZP_00393455.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|229012438|ref|ZP_04169613.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048]
 gi|30257802|gb|AAP27031.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47503681|gb|AAT32357.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179944|gb|AAT55320.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|51975782|gb|AAU17332.1| DNA-binding protein, helix-turn-helix family [Bacillus cereus
          E33L]
 gi|228748797|gb|EEL98647.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048]
          Length = 69

 Score = 44.0 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 9/77 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    H KI             T   LA + G+   +    ++         PS    FK
Sbjct: 1  MLLLLHNKIV----VCRAEKGWTQEELATRVGVSRQTIATLEKNKYN-----PSLILAFK 51

Query: 61 ILAATNETICQLLDLPF 77
          I  A  + +  + D   
Sbjct: 52 IANAFEKPLTDVFDYLE 68


>gi|330967852|gb|EGH68112.1| transcriptional regulator [Pseudomonas syringae pv. actinidiae
          str. M302091]
          Length = 125

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               ++   + R+  +  L+   LAR  G++     + +          PS + + KI 
Sbjct: 26 DLIGPRVAHNLQRLRSKRYLSMDALARLTGVNRAMLAQIESGRSV-----PSIKVLCKIA 80

Query: 63 AATNET 68
               +
Sbjct: 81 KGLKVS 86


>gi|298674998|ref|YP_003726748.1| transcriptional regulator, XRE family [Methanohalobium evestigatum
           Z-7303]
 gi|298287986|gb|ADI73952.1| transcriptional regulator, XRE family [Methanohalobium evestigatum
           Z-7303]
          Length = 185

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 20/143 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + R       T + LA+  G+      + +       +  P   ++ KI  A  +   
Sbjct: 7   ENLKRKRNELGFTQNELAKMTGVSQPLIARIE-----ANDVDPRLSTVKKIYDAFQKAEN 61

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           + L                        S      D+      + ++ V V E  S    +
Sbjct: 62  KDLLAKNIMHTDV-----------VYISPDKTINDAVNIMEKHGYSQVPVLEDWSCVGSV 110

Query: 131 YAIQTQDTRHKTQDTSMLPLYRK 153
               ++D   K    + +     
Sbjct: 111 ----SEDMILKVMTDNKINAVPD 129


>gi|294783001|ref|ZP_06748325.1| transcriptional regulator, MerR family [Fusobacterium sp.
          1_1_41FAA]
 gi|294479879|gb|EFG27656.1| transcriptional regulator, MerR family [Fusobacterium sp.
          1_1_41FAA]
          Length = 184

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I E + +      ++   LA K  L  +  ++ ++         PS E++ KI    
Sbjct: 3  IGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKA-----SPSIENLKKIAHTL 54


>gi|323527291|ref|YP_004229444.1| helix-turn-helix domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323384293|gb|ADX56384.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001]
          Length = 228

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 6/150 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 31  VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 85

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L    ++G      E+   ++      S         PT                 
Sbjct: 86  VAAFLRRHATNGFEHLPAERSSRIVSSNGRYSARPLYPENEPT-AAEFHELRIAPLHTEA 144

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
           G+             + ++         L+
Sbjct: 145 GVRRAPGTTVNLVVSEGTLEVSVHDQRQLL 174


>gi|251779099|ref|ZP_04822019.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243083414|gb|EES49304.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 386

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S+K I   I        L+ S L+ K G+   + ++ +          PS  +  K++  
Sbjct: 11 SNKIIPAKIREARISRGLSLSELSTKIGVSSQAISQYELGIST-----PSALTFIKLVEE 65

Query: 65 TNETICQLLDL 75
           +         
Sbjct: 66 LDFPSTFFYQQ 76


>gi|238761245|ref|ZP_04622222.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC
          33638]
 gi|238761498|ref|ZP_04622474.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC
          33638]
 gi|238700472|gb|EEP93213.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC
          33638]
 gi|238700725|gb|EEP93465.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC
          33638]
          Length = 193

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +I R  E+  LT + LA++AG+  ++ ++ +          PS E+++ + 
Sbjct: 21 ASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGN-----PSLETLWSLA 67


>gi|229826250|ref|ZP_04452319.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC
          49176]
 gi|229789120|gb|EEP25234.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC
          49176]
          Length = 220

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          +KI + I     +  LT   LA K G+   + +K +    
Sbjct: 4  EKISKFIATTRTKIGLTQKELADKIGVSDKTISKWETGKS 43


>gi|257065273|ref|YP_003144945.1| looped-hinge helix DNA binding domain, AbrB family [Slackia
          heliotrinireducens DSM 20476]
 gi|256792926|gb|ACV23596.1| looped-hinge helix DNA binding domain, AbrB family [Slackia
          heliotrinireducens DSM 20476]
          Length = 144

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I + I    +R  LT   LA   G+   +  K +      
Sbjct: 3  IAQNILAARQRSGLTQEQLAASVGVSRQTVAKWESGETSP 42


>gi|210630941|ref|ZP_03296686.1| hypothetical protein COLSTE_00571 [Collinsella stercoris DSM
          13279]
 gi|210160256|gb|EEA91227.1| hypothetical protein COLSTE_00571 [Collinsella stercoris DSM
          13279]
          Length = 90

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++  +I        L+   LA + G+  ++  + +          PS  ++ K+    
Sbjct: 27 EREVMRSIVEARLAAGLSQKELAERCGMRASNLCRLENGNGN-----PSVATLAKVAHGL 81

Query: 66 NET 68
           + 
Sbjct: 82 GKN 84


>gi|257061988|ref|YP_003139876.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|256592154|gb|ACV03041.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802]
          Length = 333

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + ++  R  L+   LA  A LD T  +  +R       R PS   I  I  A + 
Sbjct: 8   ELGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERG-----KRNPSLTCINSIFQALDI 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            I ++  L     +  +  +            +    D  V P    
Sbjct: 63  DIIEIFQLFDYTNKINQLSQFCQSYDLEFEYLAEVLNDPKVIPMIRG 109


>gi|218248928|ref|YP_002374299.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|218169406|gb|ACK68143.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801]
          Length = 333

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + ++  R  L+   LA  A LD T  +  +R       R PS   I  I  A + 
Sbjct: 8   ELGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERG-----KRNPSLTCINSIFQALDI 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            I ++  L     +  +  +            +    D  V P    
Sbjct: 63  DIIEIFQLFDYTNKINQLSQFCQSYDLEFEYLAEVLNDPKVIPMIRG 109


>gi|148378605|ref|YP_001253146.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931517|ref|YP_001382992.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937449|ref|YP_001386538.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148288089|emb|CAL82157.1| putative transcriptional regulator [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927561|gb|ABS33061.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933363|gb|ABS38862.1| DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 130

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++  L+   L  K  +   + +K +          P  E +  +      ++ +L
Sbjct: 7   LYSLRKQKGLSQDELGSKLNVSRQTISKWELGETT-----PELEKLIALGDFFEISLDEL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +    +   T  +            S    
Sbjct: 62  VMDVKAKESTKTEPLVMNRFETIIDSIDRE 91


>gi|49478178|ref|YP_037436.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329734|gb|AAT60380.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 374

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/193 (8%), Positives = 52/193 (26%), Gaps = 12/193 (6%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             N +I +L+       +   K         F                   ++   +   
Sbjct: 56  YFNISIDELISYKPQMEQEDIKDLYHRLAEAFSEKPFDEVMMECREIVKKYYSCFPL--- 112

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAK 183
                 I  +              +    +  + + +   + +    L+ +  +      
Sbjct: 113 ---LIQIGILFINHHMLTEDTDRRI-EILEEAMNLFSRVQEESDDVSLVKEAVSFQATCY 168

Query: 184 VLISRRGRSIDLM 196
           +++++    + L+
Sbjct: 169 LILNKPNGVLQLL 181


>gi|3915849|sp|P16117|RPC1_BP434 RecName: Full=Repressor protein CI
 gi|14987|emb|CAA68301.1| unnamed protein product [Phage 434]
          Length = 95

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +     +  L  + LA+K G    S  + +    + R R+     + ++ +A   +
Sbjct: 3   ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRF-----LPELASALGVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           +  LL+             +             G +   
Sbjct: 57  VDWLLNGTSDSNVRFVGHVEPKGKYPLISMVRAGSWCEA 95


>gi|328910532|gb|AEB62128.1| yqaE hypothetical protein [Bacillus amyloliquefaciens LL3]
          Length = 126

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +  + + ++ ++  L+   L +K GL  ++ +  +R       R P   ++ K     + 
Sbjct: 2  RFGDQLRQLRKQRKLSQKSLGQKFGLAESTISMYERNE-----REPDYATLVKFADFFDV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          +   LL           +  K+  + +  
Sbjct: 57 STDFLLRGEDYYRDKARELRKQNDVRFAA 85


>gi|323464795|gb|ADX76948.1| transcriptional regulator, Cro/CI family [Staphylococcus
           pseudintermedius ED99]
          Length = 179

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 45/169 (26%), Gaps = 21/169 (12%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I  +    NLT   L  +  L     ++ +          P+ E+   IL     
Sbjct: 2   EIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKT-----SPNMETFLNILEVLGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV---PEIR 124
           +     D          K E+             G++        N+++   +    E  
Sbjct: 57  SPRDFFDDKQVAKVHYPKSEQLSYCE-----DEKGYYLQWPVKHSNEFDMEPLLLTLEPH 111

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
           + +       +    +  + +  L         +         GD L  
Sbjct: 112 ASYKDFQPSTSDTFVYCLEGSVTL--------TLGEQQYTAEKGDALYF 152


>gi|291571772|dbj|BAI94044.1| putative XRE family transcriptional regulator [Arthrospira
           platensis NIES-39]
          Length = 115

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 29/104 (27%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I +  +    +   LA   G+D T  +K +    +   +      + + L    E +  L
Sbjct: 11  IRQARKDRGYSQRELAGLLGVDFTYLSKLENDRADYAPKEEVIRGLARNLGIDEEELIFL 70

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                       K+        F        F   VF   +  +
Sbjct: 71  AGRIPHHYENFLKENNREITALFRRLQENPNFAKQVFDAASGKD 114


>gi|268611718|ref|ZP_06145445.1| hypothetical protein RflaF_19698 [Ruminococcus flavefaciens FD-1]
          Length = 123

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 6/113 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + K     + +  +   LT   LA+K  +   + +K +      ++ +P  E +  I 
Sbjct: 1   MTTKKSFHSNLAKRRKELGLTQEMLAQKINVSSQAVSKWE------KSSYPDPELLPDIA 54

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            A N +I  L      D      +     +    P     F     +     +
Sbjct: 55  KALNTSIDSLFGNRSGDAEIDIFQLVHDRIQSLSPDKRSKFMIQLFYSAIYAY 107


>gi|251778290|ref|ZP_04821210.1| transcriptional regulator, Cro/CI family [Clostridium botulinum
          E1 str. 'BoNT E Beluga']
 gi|243082605|gb|EES48495.1| transcriptional regulator, Cro/CI family [Clostridium botulinum
          E1 str. 'BoNT E Beluga']
          Length = 183

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          +  +  +I   I    +   LT   +    G+  ++  + ++     + + P  ESI K 
Sbjct: 8  SDLTLLEIGNRIQERRKELKLTLQEVGDIVGVASSTIQRYEKGL-IAKMKLPVIESIAKA 66

Query: 62 LAATNET 68
          +      
Sbjct: 67 INVNPVW 73


>gi|212638621|ref|YP_002315141.1| putative xre family transcriptional regulator [Anoxybacillus
          flavithermus WK1]
 gi|212560101|gb|ACJ33156.1| Predicted transcriptional regulator, xre family [Anoxybacillus
          flavithermus WK1]
          Length = 115

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +  +  +  L    +A+K G+  T++   ++       R P  E++ KI      +
Sbjct: 12 GDRLQELRNKMKLRQEDVAKKIGVGRTTYAMYEQG-----KREPDYETLLKIANFFGVS 65


>gi|168178240|ref|ZP_02612904.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182670949|gb|EDT82923.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
          Length = 381

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 19/215 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       I + I    +   +T   LA   G+   S +K +         +P    + +
Sbjct: 1   MREL---NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSS-----YPDIVLLPE 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    N ++ +LL       +    K        F         +         ++    
Sbjct: 53  LATYFNISVDELLGYSPQLTKEDIGKIYSKLSHEFAVKPFDEVMEQCNKLIKKYYSCFPF 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                     Y+          ++ ++     +  IL+     + +     +    T + 
Sbjct: 113 LLSIIQLLLNYSS-------LIKNDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 165

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           ++++ +      I L+  N   P       D+  I
Sbjct: 166 LSEMTLGNSEEVIRLL-DNKLDP---YRGDDVILI 196


>gi|206968685|ref|ZP_03229640.1| transcriptional regulator, XRE family [Bacillus cereus AH1134]
 gi|206735726|gb|EDZ52884.1| transcriptional regulator, XRE family [Bacillus cereus AH1134]
          Length = 262

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + R+ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57


>gi|167747135|ref|ZP_02419262.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662]
 gi|167654095|gb|EDR98224.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662]
          Length = 239

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 4/54 (7%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++ ++R  +    +   L  +  +   + +K +               + +I  
Sbjct: 4  YKNLNRFRKEKGWSQEELGNRLNVSRQTVSKWELGTTT--PEMNKLMELSRIFQ 55


>gi|152984440|ref|YP_001347383.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
 gi|150959598|gb|ABR81623.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
          Length = 205

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 14/169 (8%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              K+I   +  + +RH LT   L+ ++G+  ++ +K +   +       S E +     
Sbjct: 16  LQRKEIGARLRAIRKRHELTLKQLSERSGVALSTLSKMELAQV-----SVSYEKLAAAAR 70

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP-- 121
           A    I Q+            +       +      + G ++      G+       P  
Sbjct: 71  ALEVDIAQIFRAAPPPADAPGQVTVVHGGVDDATGYNTGSYEYHPL-AGDFPRRSMTPLY 129

Query: 122 -----EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
                  R   +       Q+          +  +  G+ + +      
Sbjct: 130 ARIIARERREFDDYIRHPGQEFALVLSGRVRIQ-FENGESVSVGPRETA 177


>gi|289651209|ref|ZP_06482552.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          aesculi str. 2250]
          Length = 117

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          +   I  + +   ++ + LA K G D       +R         P  E + KI
Sbjct: 8  VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGI-----HLPGVEQLIKI 55


>gi|269216324|ref|ZP_06160178.1| DNA-binding protein [Slackia exigua ATCC 700122]
 gi|269130583|gb|EEZ61661.1| DNA-binding protein [Slackia exigua ATCC 700122]
          Length = 198

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/163 (9%), Positives = 43/163 (26%), Gaps = 17/163 (10%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I R+   ++L+   LA +  +   + +  +           S   +      + +++ + 
Sbjct: 7   IKRLRSENDLSQDDLASRIYVSRQTISNWENDKT--YPDVQSLLLLSATFDVSVDSLIKG 64

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                 +    +   K++ +L +  +         +      W    +P           
Sbjct: 65  DVTAMEEIIGNKDLAKKLTILSWTGAVFLIASVVLLAGGTMFWEWGMIPSTIIWLLSFGI 124

Query: 133 IQTQDTRHKTQDTSMLPLY----RKGDILILNSAIQVNCGDRL 171
                        S         R  D++     +    GD +
Sbjct: 125 -----------GCSFFWRIDRIKRDQDLVTYREIVSFIKGDPV 156


>gi|256397327|ref|YP_003118891.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256363553|gb|ACU77050.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 165

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I         +   LA+ AG+     ++ +R       R PS E + ++  A   +
Sbjct: 14 LGEYIREQRRNAEYSVRQLAQAAGVSNPYLSQIERG-----LRKPSAEILQQLAKALRIS 68


>gi|227500718|ref|ZP_03930767.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217176|gb|EEI82525.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098]
          Length = 143

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++    NLT   LA K+GL   +    +        R PS E + KI  A +  
Sbjct: 4  GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISEALDCD 57


>gi|254303749|ref|ZP_04971107.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323941|gb|EDK89191.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 182

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I R+ +  NL+   LA+ + +  +   + +R         P+  +++KI      +
Sbjct: 8   VSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGN-----PTLSTLWKIANGMQVS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L+  P    + T+  E E  L       +   F             + V +  S  +
Sbjct: 63  FNTLIAQPKLPYKVTKLAEIEPILDMNGGLKNYSLFSD--IENNFSVYQIEVGKEISWIS 120

Query: 129 GIYAIQTQDTRHKTQD 144
             +   T +     Q 
Sbjct: 121 EAHLSGTAEFVIVIQG 136


>gi|71725303|ref|YP_272277.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71558893|gb|AAZ38102.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 118

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          +   I  + +   ++ + LA K G D       +R         P  E + KI
Sbjct: 8  VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGI-----HLPGVEQLIKI 55


>gi|29171585|ref|NP_808631.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|28856078|gb|AAO59134.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|320326981|gb|EFW82998.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330882666|gb|EGH16815.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330945149|gb|EGH46863.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          pisi str. 1704B]
          Length = 117

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          +   I  + +   ++ + LA K G D       +R         P  E + KI
Sbjct: 8  VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGI-----HLPGVEQLIKI 55


>gi|85713744|ref|ZP_01044734.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A]
 gi|85699648|gb|EAQ37515.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A]
          Length = 86

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + R+  +  L+   LA  AG+D +   + +R         P+ E++ K+  A  
Sbjct: 10 NLRRLRVKRALSQEALAVDAGIDRSYVGRLERGVEN-----PTVETLDKLATALQ 59


>gi|329666628|gb|AEB92576.1| putative transcriptional regulator, Xre family [Lactobacillus
          johnsonii DPC 6026]
          Length = 288

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++ + I  + +++NL+  GLA K  +   + +K +          P  E I  +     
Sbjct: 2  RLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSI-----PDIEKIVSLSELFG 55


>gi|295101511|emb|CBK99056.1| Predicted acetyltransferase [Faecalibacterium prausnitzii L2-6]
          Length = 381

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            AI ++ E  +LT + LA K  +   + +K +          P    +  + AA   ++
Sbjct: 7  GTAIRQLREAKHLTQAELAEKLAVSAKAISKWETAHG-----LPDISLLEPLAAALGVSV 61

Query: 70 CQLLD 74
           +L+ 
Sbjct: 62 LELMQ 66


>gi|238019742|ref|ZP_04600168.1| hypothetical protein VEIDISOL_01617 [Veillonella dispar ATCC
          17748]
 gi|237863266|gb|EEP64556.1| hypothetical protein VEIDISOL_01617 [Veillonella dispar ATCC
          17748]
          Length = 91

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          A+ +  E   LT   LA+K+G+  ++  + ++          S  ++ KI  A 
Sbjct: 35 AVLKAREAAGLTQRDLAKKSGVPQSTIARIEKGANT------SLSTMCKIAFAL 82


>gi|256823032|ref|YP_003146995.1| XRE family transcriptional regulator [Kangiella koreensis DSM
          16069]
 gi|256796571|gb|ACV27227.1| transcriptional regulator, XRE family [Kangiella koreensis DSM
          16069]
          Length = 70

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H ++   I      H ++   LA   G+   + +  +          PST    KI    
Sbjct: 2  HPELDNRIRVFRAEHRMSQGELAEAIGVSRKTISTIEVGKFV-----PSTIIALKIAEYF 56

Query: 66 NETICQLL 73
             + ++ 
Sbjct: 57 KVPVEEVF 64


>gi|227485416|ref|ZP_03915732.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227236546|gb|EEI86561.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 143

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E + ++    NLT   LA K+GL   +    +        R PS E + KI  A +  I
Sbjct: 4  GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISEALDCDI 58

Query: 70 CQLLDLPFSDGRTTEK 85
            L++   +       
Sbjct: 59 SALINHEPNSIFEIMH 74


>gi|148977326|ref|ZP_01813940.1| transcriptional regulator, XRE family protein [Vibrionales
           bacterium SWAT-3]
 gi|145963439|gb|EDK28703.1| transcriptional regulator, XRE family protein [Vibrionales
           bacterium SWAT-3]
          Length = 186

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/145 (6%), Positives = 38/145 (26%), Gaps = 6/145 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +  K+   + R+ +    +    A+  G+      + +          P+   +++I 
Sbjct: 1   MQTEIKVGTNLKRLRQEKGWSLDKAAKATGVSKAMLGQIELGES-----SPTVAKLWQIA 55

Query: 63  AATNETICQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           +    +    +    ++  T+  +   E+    +                G +   + + 
Sbjct: 56  SGFEVSFSSFITESSNNELTSLFRDANELRREEYNVGFFVSLLFPFEEALGFEIFELTLA 115

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTS 146
                 +  +     +         
Sbjct: 116 PGYQHESDPHNTGVTEHILCIAGEM 140


>gi|197117932|ref|YP_002138359.1| XRE family transcriptional regulator [Geobacter bemidjiensis Bem]
 gi|197087292|gb|ACH38563.1| transcriptional regulator, XRE family [Geobacter bemidjiensis
          Bem]
          Length = 65

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ ++ E   ++ + LAR AG+ P + ++ +R            E+  KIL A   +
Sbjct: 2  IMNSVKKLREERLMSKAELARLAGVSPITIDRIERGE------DCRMETKRKILLALGFS 55

Query: 69 ICQLLDLPF 77
          +     +  
Sbjct: 56 LSDKQKVFQ 64


>gi|254366483|ref|ZP_04982527.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|134151995|gb|EBA44040.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
          Length = 252

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S +    AI  + E  + + + LA   G+     +  +R       R P   ++ K+  
Sbjct: 1  MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGA-----RKPHKSTVQKVEN 55

Query: 64 ATN 66
             
Sbjct: 56 GLG 58


>gi|89897113|ref|YP_520600.1| hypothetical protein DSY4367 [Desulfitobacterium hafniense Y51]
 gi|89336561|dbj|BAE86156.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 75

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42
          + I R  +   LT   LARK G+   + +K +
Sbjct: 3  KNICRYRKEKGLTQEELARKLGVTFQAVSKWE 34


>gi|117920280|ref|YP_869472.1| putative prophage repressor [Shewanella sp. ANA-3]
 gi|117612612|gb|ABK48066.1| putative prophage repressor [Shewanella sp. ANA-3]
          Length = 274

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKT-QDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPR 176
              E+R+  + +  +    T     Q  SM        DILI++  +    G  +++   
Sbjct: 156 DYSELRTNLDDLLVLHPCATWFGVAQGDSMQDEGIYDRDILIIDRQVNALQG-AVIVAQL 214

Query: 177 TGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            G+ + K+   +R     L+S N  Y    +   D
Sbjct: 215 NGEFICKIFDKKRR---MLLSANPQYHAVPIRDCD 246


>gi|77412917|ref|ZP_00789121.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77161057|gb|EAO72164.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
          Length = 76

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + +  + +   L    +A   G+   +++  +    E     P+ E++ K+    
Sbjct: 14 KRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSE-----PNLENVVKLAKLF 63


>gi|317405664|gb|EFV85961.1| hypothetical protein HMPREF0005_01323 [Achromobacter xylosoxidans
          C54]
          Length = 86

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESI 58
          T  + +++   +    ++  LT +  A + G+   + +  +R   + G +R     SI
Sbjct: 5  TVRTAEQLPALLQAFRKKAGLTQAAAALRLGITQQTLSALERNAEKVGADRLLQLLSI 62


>gi|311742888|ref|ZP_07716696.1| DNA-binding protein [Aeromicrobium marinum DSM 15272]
 gi|311313568|gb|EFQ83477.1| DNA-binding protein [Aeromicrobium marinum DSM 15272]
          Length = 259

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 17/45 (37%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
          I   I    E   ++   L+R+  + P+  ++ +R       R  
Sbjct: 31 IGHRIRSAREAAGISVRELSRRLEVSPSHVSQVERGLASFSVRAL 75


>gi|289422564|ref|ZP_06424407.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289157136|gb|EFD05758.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 69

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 5/52 (9%), Positives = 18/52 (34%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          ++   +  + +   L+ + LA   G+   + +  +        +     +I 
Sbjct: 6  QLKNRLKDIRKELGLSQTDLANMVGVSRNTISSIETGQFNPTAKLALILAIA 57


>gi|302531995|ref|ZP_07284337.1| hypothetical protein SSMG_08377 [Streptomyces sp. AA4]
 gi|302440890|gb|EFL12706.1| hypothetical protein SSMG_08377 [Streptomyces sp. AA4]
          Length = 148

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          EA+     +  L+   LAR A + P +    +        R P  +S+ +I AA    + 
Sbjct: 12 EALAAARRQRGLSRGDLARLADISPAAVASLETG-----RRQPQVDSLARIAAALGIAVR 66

Query: 71 QLLDLPFSDGR 81
           L+ +P     
Sbjct: 67 DLVPIPDEQRH 77



 Score = 35.5 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
           +  +     LT + LA   G+ PT     +R  
Sbjct: 78  LSDLRVHAGLTQAALAAAIGVSPTRLGALERAE 110


>gi|229051388|ref|ZP_04194893.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676]
 gi|228721957|gb|EEL73397.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676]
          Length = 112

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 15/46 (32%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           + + ++ +    T   L    GL   + +  +    +   R  S 
Sbjct: 3  GDRVKQLRKSKGWTQGELGDAVGLKKATISLIENNKRDRSERSVSV 48


>gi|221113124|ref|XP_002159017.1| PREDICTED: similar to transposase-like, partial [Hydra
           magnipapillata]
          Length = 218

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 4/110 (3%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S  KI   I  +     L+   +A+K G+  TS  + K       NR    +   K  
Sbjct: 6   DLSPTKIG-FIKALINEKTLSQREIAKKCGISHTSVQRPKLTIKIKENR---LKWALKYK 61

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
             T E   Q+     S  +    K + +               +  +PT 
Sbjct: 62  NFTVEDWKQVCFSDESTFQVMTNKAQYVRRKISEKYHEDCVIKTVKYPTS 111


>gi|219667624|ref|YP_002458059.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219537884|gb|ACL19623.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 63

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I +  +  N++   LA++  +   + N  +    +     P+    FK+      T+ 
Sbjct: 3  NNIRQYRKEKNISQEDLAKRCNVSRQTINAIENNKYD-----PTLSLAFKLAEVLQVTVD 57

Query: 71 Q 71
          +
Sbjct: 58 E 58


>gi|218289603|ref|ZP_03493823.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240253|gb|EED07436.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 436

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 48/193 (24%), Gaps = 25/193 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + + + I  + +   +T S LAR  GL   +  ++ +          PS + +  I A  
Sbjct: 2   ETLGQKIRALRKARGMTQSELAR--GLATASMISQIESDRT-----MPSAQLLAHIAARL 54

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              + +                +   L                      + ++  P    
Sbjct: 55  GVDVSEFQRELAGSSEEAHTYRRAKQLAEQGHYEEAIRH----------FLSLSWPLHTQ 104

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRTGDIVAK 183
               +      D   K  D         G +           GD   ++     G +  +
Sbjct: 105 FRAELVFQDMGDCYLKAGDYEQAARLYDGLVW-----AGFARGDMSSVVRGYYYGALARR 159

Query: 184 VLISRRGRSIDLM 196
            L       + L 
Sbjct: 160 RLQRDEEAILYLE 172


>gi|253700083|ref|YP_003021272.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251774933|gb|ACT17514.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 114

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 14/43 (32%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          S  +I   I R  +   L+   LA   G+      K +     
Sbjct: 6  SSAEIGTLIRRYRQDAGLSQEKLAEMVGVSFQQIQKYENGHTT 48


>gi|167564668|ref|ZP_02357584.1| DNA-binding protein [Burkholderia oklahomensis EO147]
          Length = 200

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 22  RVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 76

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +L   P +          +IP L    +      +         +W  + +P   + 
Sbjct: 77  SLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGKFEWYELTLPANGAL 136

Query: 127 HNGIYAIQTQDTRHKTQDTSML 148
            +  +            + S+ 
Sbjct: 137 VSNPHE-PGTREHLTVLNGSVE 157


>gi|56419027|ref|YP_146345.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus
          HTA426]
 gi|56378869|dbj|BAD74777.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus
          HTA426]
          Length = 121

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +  + ++ N+T   LA K  L  ++    +R       R PS E + ++    N T 
Sbjct: 4  GKRLRFLRKKMNMTQKDLADKFSLGESTIGMYERDE-----REPSFEFVRQLADFFNVTT 58

Query: 70 CQLLDLPFSDGRTTEKK 86
            LL        + +  
Sbjct: 59 DYLLGRTDHPNPSEQDD 75


>gi|317471753|ref|ZP_07931093.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA]
 gi|316900776|gb|EFV22750.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA]
          Length = 159

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 5/103 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +KI   I    +   LT + LA   G+   + +K +          P      K+  A +
Sbjct: 4   QKIGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKC-----LPDLSLHEKLCDALH 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            T+ +L+     +     +  ++                    
Sbjct: 59  ITLNELVAGQDIESTQLPEASEQNMKTMLGSCQHLRSLKDVCI 101


>gi|259157933|gb|ACV97145.1| putative transcriptional regulator XRE family [uncultured
          bacterium]
          Length = 115

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          R      L+ + +A + G   ++  + +      +   PS  ++ K   A + 
Sbjct: 37 RARAEAGLSQAQVAERVGTTQSAIARLESG---AQRHSPSIATLQKYAKALDY 86


>gi|306828752|ref|ZP_07461944.1| XRE family transcriptional regulator [Streptococcus mitis ATCC
           6249]
 gi|304428930|gb|EFM32018.1| XRE family transcriptional regulator [Streptococcus mitis ATCC
           6249]
          Length = 165

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E +  + +    +   LA +  +   S +K +   +      P  E I ++      
Sbjct: 2   KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQV-----LPEIEKIIELSKIFQV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           T   LL    S+  +T    +E    Y+    S G +     
Sbjct: 57  TTDYLLLDENSEKSSTAVILEEDKDKYYREVKSFGLWQVIYI 98


>gi|237733689|ref|ZP_04564170.1| phosphoribosylformylglycinamidine cyclo-ligase [Mollicutes
          bacterium D7]
 gi|229383287|gb|EEO33378.1| phosphoribosylformylglycinamidine cyclo-ligase [Coprobacillus sp.
          D7]
          Length = 415

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +  K+ E I    +   LT   LA K  +   + +K +  G+      P+ E +  + 
Sbjct: 1  MINVNKVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGGL------PNVEILSDLA 54

Query: 63 AATNETICQ 71
          A    T+ +
Sbjct: 55 ALLEITVDE 63


>gi|225405316|ref|ZP_03760505.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme
           DSM 15981]
 gi|225043159|gb|EEG53405.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme
           DSM 15981]
          Length = 130

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K +   I    +   +T   LA K  +   + +K +R         P   S+  + A  
Sbjct: 2   EKTLGMIIAEHRKEKGMTQLELAEKMRVTDKAVSKWERDLS-----CPDIHSLPNLAAIL 56

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
             +I  L+ +      +++  ++ + +L+   + + G  
Sbjct: 57  GISIDDLMQIKREVPVSSKNPKEVMDILFKAVALAMGIA 95


>gi|212712673|ref|ZP_03320801.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens
          DSM 30120]
 gi|212684589|gb|EEB44117.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens
          DSM 30120]
          Length = 91

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I   +     R  LT S LA++  +     ++ +           S + +  +  A  
Sbjct: 9  NNIGRMLKDYRRRTGLTGSELAKRINVSQQQISRYENGVNN-----ISFDKLIILFNALE 63

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
           +   +           +    +   +
Sbjct: 64 MSSRDIDVFFEKMKYLFDSSVYKNSKI 90


>gi|188589861|ref|YP_001921889.1| transcriptional regulator, Cro/CI family [Clostridium botulinum
          E3 str. Alaska E43]
 gi|188500142|gb|ACD53278.1| transcriptional regulator, Cro/CI family [Clostridium botulinum
          E3 str. Alaska E43]
          Length = 160

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I +  E  +LT   L +  G+  ++  K +     G  R  +  ++ K L  +  
Sbjct: 2  EIKDIIRKRREELDLTYEQLGKIVGVGKSTVRKWETGM-IGNLRSDNILALAKGLNLSPS 60

Query: 68 TICQLLDLPFSD 79
          T+    +   + 
Sbjct: 61 TLMGWTEEENTY 72


>gi|167755461|ref|ZP_02427588.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402]
 gi|167704400|gb|EDS18979.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402]
          Length = 426

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +  K+ E I    +   LT   LA K  +   + +K +  G+      P+ E +  + 
Sbjct: 12 MINVNKVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGGL------PNVEILSDLA 65

Query: 63 AATNETICQ 71
          A    T+ +
Sbjct: 66 ALLEITVDE 74


>gi|167746942|ref|ZP_02419069.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662]
 gi|167653902|gb|EDR98031.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662]
          Length = 159

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 5/103 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +KI   I    +   LT + LA   G+   + +K +          P      K+  A +
Sbjct: 4   QKIGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKC-----LPDLSLHEKLCDALH 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            T+ +L+     +     +  ++                    
Sbjct: 59  ITLNELVAGQDIESTQLPEASEQNMKTMLGSCQHLRSLKDVCI 101


>gi|126738207|ref|ZP_01753928.1| possible transcriptional regulator, XRE family protein [Roseobacter
           sp. SK209-2-6]
 gi|126720704|gb|EBA17409.1| possible transcriptional regulator, XRE family protein [Roseobacter
           sp. SK209-2-6]
          Length = 161

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 5/108 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ I  A+    E   LT S +A   G+D +  ++             + ++I +I    
Sbjct: 50  HRAIVRAVREAKESRGLTQSDIAESMGVDKSVVSRILNGKGN-----LTLQTIGEISWVL 104

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
                 +               ++   +  P S    FF +  F    
Sbjct: 105 GLRPDLVFSNAAPKDFPGNNHYQQDLRVDRPGSSGASFFQTSEFAANQ 152


>gi|125719074|ref|YP_001036207.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK36]
 gi|125498991|gb|ABN45657.1| Transcriptional regulator, XRE family, putative [Streptococcus
          sanguinis SK36]
          Length = 74

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|161525328|ref|YP_001580340.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|160342757|gb|ABX15843.1| transcriptional regulator, XRE family [Burkholderia multivorans
           ATCC 17616]
          Length = 224

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 40/159 (25%), Gaps = 22/159 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA + G+  +  +  +R         P+   + K+ A  
Sbjct: 34  NERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAA-----SPTAVVLDKLAAGL 88

Query: 66  NETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
             ++  L             ++ ++          +        +P+  +   V  P   
Sbjct: 89  GISLAGLFGGDDGAPAQPLVRRAQQAEWRDPASGYARRNLSPPGWPSPLQLVEVDFPPGA 148

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
                           +    +          + +    
Sbjct: 149 ----------------RVAYDTGAREIAWHQQIWVVRGR 171


>gi|10956667|ref|NP_066803.1| putative repressor protein [Rhodococcus equi]
 gi|31983897|ref|NP_858505.1| repressor protein [Rhodococcus equi]
 gi|197313525|ref|YP_002149570.1| putative helix turn helix protein [Rhodococcus equi]
 gi|197313592|ref|YP_002149636.1| putative helix turn helix protein [Rhodococcus equi]
 gi|10657914|gb|AAG21753.1| putative repressor protein [Rhodococcus equi]
 gi|10801105|dbj|BAB16659.1| Putative repressor protein (trbA) [Rhodococcus equi]
 gi|197092567|emb|CAQ30306.1| putative helix turn helix protein [Rhodococcus equi]
 gi|197092634|emb|CAQ30377.1| putative helix turn helix protein [Rhodococcus equi]
 gi|297718607|gb|ADI50222.1| putative helix-turn-helix protein [Rhodococcus equi]
          Length = 148

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +     L+ S L R +G+   +  + +          P+ + + ++     
Sbjct: 12 ARLKELRGEKGLSRSDLGRLSGVPYNTIRRWETGNS-----APAPDLLARVAEVLG 62


>gi|85711642|ref|ZP_01042699.1| DNA-binding protein [Idiomarina baltica OS145]
 gi|85694502|gb|EAQ32443.1| DNA-binding protein [Idiomarina baltica OS145]
          Length = 63

 Score = 44.0 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +    N T + LA+   +   + N  +    +     PS    FKI      TI 
Sbjct: 3  NRLKVLRAERNWTQNDLAQALSVSRQTINAIETGKFD-----PSLPLAFKIAKVFQCTIE 57

Query: 71 QLL 73
           + 
Sbjct: 58 DVF 60


>gi|332188239|ref|ZP_08389967.1| helix-turn-helix family protein [Sphingomonas sp. S17]
 gi|332011738|gb|EGI53815.1| helix-turn-helix family protein [Sphingomonas sp. S17]
          Length = 68

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          ++ +   +    E   LT  GLA   G+   + N  +    +   
Sbjct: 2  NETLGNDLKAAREAAGLTQGGLAEAIGVSRKTINTVENGVFQPST 46


>gi|309777026|ref|ZP_07671995.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915236|gb|EFP61007.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
          Length = 147

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 3/105 (2%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   +  + E++NLT   LA +  +   + ++ +    +          + ++   +  
Sbjct: 2   EIQGILKNLREKNNLTQEQLAERVQVTRQAVSRWETGETQPNTDTLKL--LSRVFDVSIN 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
           T+                  ++  +   P       +    +  G
Sbjct: 60  TLLGSPRQL-VCQCCGMPLNEDGLISREPDGSYNEDYCKWCYANG 103


>gi|302536851|ref|ZP_07289193.1| nickel-type superoxide dismutase maturation protease [Streptomyces
           sp. C]
 gi|302445746|gb|EFL17562.1| nickel-type superoxide dismutase maturation protease [Streptomyces
           sp. C]
          Length = 144

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP--RTGDIVAKVLISRRGRSIDLMSL 198
           +    SM+P    GD L +     V  GD ++ +   +   +V K    RR     ++  
Sbjct: 20  EVTGPSMVPTLVHGDRLAVRYGGLVRPGDVVVFRHPLQQDLLVVKRAAERRPGGWWMLGD 79

Query: 199 NC 200
           N 
Sbjct: 80  NP 81


>gi|302672234|ref|YP_003832194.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396707|gb|ADL35612.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 374

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 37/154 (24%), Gaps = 8/154 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   I  +    NLT   LA +  +   S ++ +          P    I  I     
Sbjct: 2   NNLGSKIKELRIAENLTQEKLAEELNVSFQSISRWENGIST-----PDISLIPAIARFFG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW--NTVGVPEIR 124
            +   L  L   +    + +  E     +   G+       +      +  +      + 
Sbjct: 57  VSTDYLFGLQDEESEAEKSEL-EAAYWDYRKEGNLDEAYEVMLKARKLFPRDMHFCSNLA 115

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
                     ++             ++     ++
Sbjct: 116 EVMELFDGGNSEQMSAYVNGNFSEQIFSLCRRVV 149


>gi|290962183|ref|YP_003493365.1| regulatory protein [Streptomyces scabiei 87.22]
 gi|260651709|emb|CBG74834.1| putative regulatory protein [Streptomyces scabiei 87.22]
          Length = 198

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 7/133 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+ +    T +GL+   G+  ++ ++ +        R PS E +  I  A    
Sbjct: 18  VGPRLRRIRKEREATLAGLSEATGISVSTLSRLESG-----LRKPSLELLLPIARAHQVP 72

Query: 69  ICQLLDLPFSDGRTTEK-KEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           + +L+  P            +     Y+P +   G   +              P     +
Sbjct: 73  LDELIGEPPVGDPRVRSKPIRRHGRTYWPLTRQPGGLQAFKVLVPQSKQE-PEPRTHEGY 131

Query: 128 NGIYAIQTQDTRH 140
             +Y +  +    
Sbjct: 132 EWLYVMSGKLRVV 144


>gi|239814885|ref|YP_002943795.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801462|gb|ACS18529.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 182

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 40/137 (29%), Gaps = 8/137 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET-ICQ 71
           I  +     ++ + LA + G+  +  ++ +R  +      PS E++ +I    N      
Sbjct: 5   IKALRMAAGISGNELAHRCGVSGSLLSRVERGLV-----SPSVETLNRIAVGLNVPLSRF 59

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI- 130
             D       +     + I +          +   G   +GN +    +  +        
Sbjct: 60  FCDHARRTDWSFVPAGRGIVVGRIGAVKDYRYELLGHLLSGNLFVEPYLVTLLPQAEPYS 119

Query: 131 -YAIQTQDTRHKTQDTS 146
            +        +     +
Sbjct: 120 SFQHPGIKFLYVISGRA 136


>gi|225571094|ref|ZP_03780111.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM
           15053]
 gi|225160175|gb|EEG72794.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM
           15053]
          Length = 158

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 12/131 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP---------STESIFKI 61
           E I  + + ++LT   LA K  +   S +K +                    +T+ + K 
Sbjct: 10  EKILTLRKSNDLTQEELAEKLNVSRQSVSKWESGQAVPELEKIVALSSVFNVTTDYLLKP 69

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                 ++   +           +K++   +     +         V   G+    +   
Sbjct: 70  AEIDELSVKTNILEKQQQQILLREKQRNKIVRCVMYAVGVYLLFFAVAFIGH---YIAFD 126

Query: 122 EIRSPHNGIYA 132
                 + I++
Sbjct: 127 FGFGNPSIIFS 137


>gi|197261593|ref|YP_002154410.1| helix-turn-helix domain protein [Bacillus phage IEBH]
 gi|197092465|gb|ACH42340.1| helix-turn-helix domain protein [Bacillus phage IEBH]
 gi|283765986|gb|ADB28402.1| helix-turn-helix domain protein [Bacillus phage 250]
          Length = 137

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E +    E+   T + ++ K  ++  + +  +        R P  E++ K+      
Sbjct: 25 NLNERLKACREKKGYTQTFISEKLDVNKATLSSYESG-----RRKPDYETLTKLADIYEV 79

Query: 68 T 68
          +
Sbjct: 80 S 80


>gi|116873702|ref|YP_850483.1| DNA-binding protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116742580|emb|CAK21704.1| DNA-binding protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 115

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  + +++ LT   LA K G   ++ +K +          P    + K+      T
Sbjct: 4  GEKLIHLRKKNRLTQKQLAEKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 57


>gi|50842706|ref|YP_055933.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes KPA171202]
 gi|50840308|gb|AAT82975.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes KPA171202]
 gi|332675629|gb|AEE72445.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes 266]
          Length = 548

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 5/105 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +   +   I    ++H +T + LA       ++ ++ +           S E I +I  A
Sbjct: 45  TPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQN-----LSLEYINRIAEA 99

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
               I         + R     +    +       +         
Sbjct: 100 LESPIITQPGSGTMNYRIEGGHQLSGSIEVRSSKNAAVALLCACL 144


>gi|158318022|ref|YP_001510530.1| helix-turn-helix domain-containing protein [Frankia sp. EAN1pec]
 gi|158113427|gb|ABW15624.1| helix-turn-helix domain protein [Frankia sp. EAN1pec]
          Length = 366

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E I        L+   LA  +G+  T  +K +        ++PS + +  I A T    
Sbjct: 14 GERIRAARTLLGLSQGDLAEASGVGQTMISKIESGA-----KYPSDDLLDTIAAVTGTPR 68


>gi|331087042|ref|ZP_08336117.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330409492|gb|EGG88935.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 296

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I +  +   ++   LA    +   + +K +          P  E + ++      +
Sbjct: 2  LGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSV-----PDAELLIRLAEVLGIS 56

Query: 69 ICQLLDLPFSDGRTT 83
          + +LL         +
Sbjct: 57 VAELLGTDEQPHSES 71


>gi|325663518|ref|ZP_08151928.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325470417|gb|EGC73648.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 296

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I +  +   ++   LA    +   + +K +          P  E + ++      +
Sbjct: 2  LGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSV-----PDAELLIRLAEVLGIS 56

Query: 69 ICQLLDLPFSDGRTT 83
          + +LL         +
Sbjct: 57 VAELLGTDEQPHSES 71


>gi|326403693|ref|YP_004283775.1| Xre family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050555|dbj|BAJ80893.1| Xre family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 469

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 5/102 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S   I   + R+ + H LT   LA + G+  +  N  +        R  +   + K+  
Sbjct: 1   MSKPLIGRIVRRLRQEHGLTQQKLASRLGISTSYLNLIEHDQ-----RGVTAALLIKLTE 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                +  L            ++    PL+            
Sbjct: 56  TLKVDLAALSGSDERQVEQALREAFADPLIGTESVPDSEAQM 97


>gi|323488389|ref|ZP_08093636.1| DNA-binding protein [Planococcus donghaensis MPA1U2]
 gi|323397896|gb|EGA90695.1| DNA-binding protein [Planococcus donghaensis MPA1U2]
          Length = 67

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  +      T   L+ K G+   +    +    +     PS E  +KI       I 
Sbjct: 3  HRIKELRTSFGYTQEQLSEKLGVSRQTIISIENGRYK-----PSLELAYKIATLFQLRIE 57

Query: 71 QLLDLP 76
           +    
Sbjct: 58 DVFIFE 63


>gi|315173575|gb|EFU17592.1| helix-turn-helix protein [Enterococcus faecalis TX1346]
          Length = 170

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 5/98 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I +  +  N+T   LA + G+ P++ +             PS   I +I        
Sbjct: 7   MDFIKKYLKESNITQKKLAEEIGISPSTMSDYMNLRSN-----PSHGVIQRIADYFKIKK 61

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             +      +   +  +     L               
Sbjct: 62  SDIDTTYKENSDPSSLESIYNILEPERQKIVYETAKEQ 99


>gi|291540195|emb|CBL13306.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 107

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I +  +  ++T   L++++G+  ++  K +        R P  + + KI  A   +
Sbjct: 7  IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGE-----RNPKPDQLQKIAEALGIS 61


>gi|288962006|ref|YP_003452316.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914286|dbj|BAI75772.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 486

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + R+ E+  LT + LA+   L P+  N+ +        R  +   + +I A   
Sbjct: 11 LRRLREQRGLTQASLAKTLELSPSYLNQLENNQ-----RPLTLPVLMRIAATFE 59


>gi|284055750|pdb|3KXA|A Chain A, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae
 gi|284055751|pdb|3KXA|B Chain B, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae
 gi|284055752|pdb|3KXA|C Chain C, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae
 gi|284055753|pdb|3KXA|D Chain D, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae
          Length = 141

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
            +  +   T S LA  AGL     ++ +        +    +++ K+  A   +  ++  
Sbjct: 75  SLRXKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 129

Query: 75  LPFSDGR 81
                  
Sbjct: 130 AFERRYE 136


>gi|323528479|ref|YP_004230631.1| Cupin 2 barrel domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323385481|gb|ADX57571.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1001]
          Length = 215

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 50/168 (29%), Gaps = 28/168 (16%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-------------- 47
            +  HK +   + +  +   LT + L+ ++G+  ++ +K++R  I               
Sbjct: 18  PALDHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 77

Query: 48  -------GRNRWPSTESIFKILAATNETICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSG 99
                  GR R P+  ++     A  +                    ++ +P+     + 
Sbjct: 78  LEFDAIFGRRRKPAAGAMKPSFTAAGKQPVYDTPNYEYGMLANNLTGKRMMPMRAHIHAR 137

Query: 100 SGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM 147
           +   F   +   G          + +    +     +  R      S+
Sbjct: 138 AVSDFPEYIRHAGE-----EFVFLLAGKLELRFENGKSFRLT-PGDSL 179


>gi|221641156|ref|YP_002527418.1| hypothetical protein RSKD131_3057 [Rhodobacter sphaeroides KD131]
 gi|221161937|gb|ACM02917.1| Hypothetical Protein RSKD131_3057 [Rhodobacter sphaeroides KD131]
          Length = 212

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 30/218 (13%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           +A+ R  +    +   +  KAG+         +  ++G++   + +   KI AA   +I 
Sbjct: 7   DALARALKETKRSLRSVCLKAGVSY----DQMKSLMQGKSASTNIDDGIKIAAAFGVSIE 62

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                 F    +     +         +G+        +  G+    V  P    PH   
Sbjct: 63  DFFAGVFDRQPSVAVAGR-------VGAGAHVDLVDA-YAKGDGMYHVACPPQLKPHG-- 112

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI------QVNCGDRLLIKPRTGDIVAKV 184
                     + +  SMLPL+R G +L    A       +       + +   G    KV
Sbjct: 113 ------VVAVEVEGDSMLPLHRPGSVLFYTRAAAEGVPVEAINA-PCVCEDVDGRAWLKV 165

Query: 185 LISRR-GRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221
           +       +  L+SLN            ++W A +L A
Sbjct: 166 VKIGSQEGTFSLLSLNPDSDNMH--GVRLKWAAPVLLA 201


>gi|229814963|ref|ZP_04445301.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM
          13280]
 gi|229809450|gb|EEP45214.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM
          13280]
          Length = 217

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    ER  ++   LA+   +   + +  +          P  +S+  +      T
Sbjct: 6  IGTGIRIQRERLGMSQQDLAQACMVSRQTISNWETGKT-----LPDIQSMAYLAEVFGVT 60

Query: 69 ICQ 71
          +  
Sbjct: 61 VDD 63


>gi|172064748|ref|YP_001812398.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171998233|gb|ACB69149.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 115

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          E +    E    +   LA KA + P+S    +       +R PS +++ ++  A  
Sbjct: 13 ERLRAARELRKWSQGELAEKASMPPSSIAHFESG-----SRKPSFDTLRRLANALE 63


>gi|170690931|ref|ZP_02882097.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M]
 gi|170144180|gb|EDT12342.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M]
          Length = 207

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     +T   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 29  RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 83

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  L     +          EIP L    +         +   G  +    +
Sbjct: 84  SLDSLFAPQKTPEAIAVAGPHEIPTLSGHDAKYQLRVWGPIELAGK-FEWYEL 135


>gi|159039188|ref|YP_001538441.1| XRE family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918023|gb|ABV99450.1| transcriptional regulator, XRE family [Salinispora arenicola
           CNS-205]
          Length = 196

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 11/137 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   +  +  +   T + L+   G+  ++ ++ +        R P+ E +  +  A  
Sbjct: 10  EAVGPRLRALRRQRETTLTELSANTGVSVSTLSRLESGA-----RRPTLELLLPLARAYG 64

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIP---LLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
            T+ +L+  P +       +        +L       G      V P G +      P+ 
Sbjct: 65  VTLDELVGAPPTGDPRIHLRPATYNGMTVLPLTRRAGGIQAFKLVIPIGRRE---PEPKT 121

Query: 124 RSPHNGIYAIQTQDTRH 140
              ++ +Y +  +    
Sbjct: 122 HDGYDWLYVLNGRLRLI 138


>gi|108936762|emb|CAK48822.1| Sse9I control protein [Sporosarcina sp.]
          Length = 92

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + +  +     L+   LA   G+  T     +R       R P+ +S+ ++ A  
Sbjct: 19 GQNLRDLRVARGLSQEALAELIGVHRTYMGGLERGE-----RNPTLKSVERVAAHL 69


>gi|14520527|ref|NP_126002.1| inosine-5'-monophosphate dehydrogenase-like protein I [Pyrococcus
           abyssi GE5]
 gi|5457743|emb|CAB49233.1| Predicted transcriptional regulator [Pyrococcus abyssi GE5]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 1/123 (0%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ +   +T   LARKAG+      K +   ++ R    +   +  +L      I   
Sbjct: 13  IKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNR-ILRALLECQKTRITAK 71

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
             +         + +    +                           +         IY+
Sbjct: 72  SIMSSPIISAKPEDKISDIVKVMEKYNISQVPVIVKDKVVGAITERLLVRKSLEDEDIYS 131

Query: 133 IQT 135
            + 
Sbjct: 132 KRA 134


>gi|148266398|ref|YP_001233104.1| helix-turn-helix domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399898|gb|ABQ28531.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4]
          Length = 355

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  + E   +    L   AG+   +    +R       R PS + + K+    +
Sbjct: 3  LRELRELAGMKQEALGELAGVTRQTIAAWERGE-----RQPSMQQVVKLCQILH 51


>gi|326796388|ref|YP_004314208.1| peptidase S24/S26A/S26B, conserved region [Marinomonas mediterranea
           MMB-1]
 gi|326547152|gb|ADZ92372.1| Peptidase S24/S26A/S26B, conserved region [Marinomonas mediterranea
           MMB-1]
          Length = 99

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSA-IQVNCGDRLLIKPRTGDIVAKVLISRR-GRSIDLM 196
             K +  SM P    GD ++      Q+  G  + +   T   + K ++       + L 
Sbjct: 4   LFKVEGDSMSPDILDGDFILTFKWFRQIRAGQLVAVDHETYGFIVKRVVKVAQDGQLWLE 63

Query: 197 SLNCCYPVDTVEMSDIEWIA--RI---LW 220
             N      ++    I W++  R+   +W
Sbjct: 64  GTNRN----SLTPERIGWVSPRRVLGKVW 88


>gi|310827340|ref|YP_003959697.1| hypothetical protein ELI_1748 [Eubacterium limosum KIST612]
 gi|308739074|gb|ADO36734.1| hypothetical protein ELI_1748 [Eubacterium limosum KIST612]
          Length = 71

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +     R  +  S L + AG+   + +  +R         PS     KI    N +
Sbjct: 3  LKNRLKEFRARDKINQSELGKLAGVSRQTISLIERGDY-----SPSVTLALKIARIFNTS 57

Query: 69 ICQLLDLPF 77
          +  +     
Sbjct: 58 VEDIFTYSD 66


>gi|295108696|emb|CBL22649.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 336

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I    +++  +   LA + G+   + +K +  G       P  + I ++      +
Sbjct: 3  LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAV-----PDLQRILQMSELFGVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
             LL         T  +  E      
Sbjct: 58 TDYLLKDEMKAENITYHESTESYAEPL 84


>gi|284055653|pdb|3JXB|C Chain C, Crystal Structure Of The P22 C2 Repressor Protein In
          Complex With Synthetic Operator 9c
 gi|284055654|pdb|3JXB|D Chain D, Crystal Structure Of The P22 C2 Repressor Protein In
          Complex With Synthetic Operator 9c
 gi|284055657|pdb|3JXC|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In
          Complex With Synthetic Operator 9t In The Presence Of
          Tl+
 gi|284055658|pdb|3JXC|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In
          Complex With Synthetic Operator 9t In The Presence Of
          Tl+
 gi|284055661|pdb|3JXD|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In
          Complex With Synthetic Operator 9c In The Presence Of
          Rb+
 gi|284055662|pdb|3JXD|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In
          Complex With Synthetic Operator 9c In The Presence Of
          Rb+
          Length = 67

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E I    ++  +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 6  GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALSKALQCSP 60

Query: 70 CQ 71
            
Sbjct: 61 DY 62


>gi|290962090|ref|YP_003493272.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260651616|emb|CBG74740.1| putative transcriptional regulatory protein [Streptomyces scabiei
           87.22]
          Length = 190

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 6/124 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  ++ KI  A  
Sbjct: 9   QSLARNVKRWRTERGFTLDALASRAGVSRGMLIQIEQARTN-----PSIGTVVKIGDALG 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125
            +I  LLD            E+ + L +               P     W+ + +P   S
Sbjct: 64  VSITTLLDYERGPRVRIVPAEQVVRLWHTEAGSHSKLLAGAEAPGPLEMWDWLLMPGEGS 123

Query: 126 PHNG 129
             + 
Sbjct: 124 RSDP 127


>gi|257877810|ref|ZP_05657463.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257811976|gb|EEV40796.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 166

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       +   +    +++ LT S LA    +   + +K +         +PS +++ K
Sbjct: 1  MVEMKETILAMKLKEYRKKNKLTQSMLAELLEVSDKTISKWELGAT-----YPSKKNMIK 55

Query: 61 ILAATNET 68
          I    + +
Sbjct: 56 IAEELDIS 63


>gi|302530702|ref|ZP_07283044.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302439597|gb|EFL11413.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 187

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/143 (9%), Positives = 41/143 (28%), Gaps = 5/143 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  +  R  +T + L+ + G+  ++ ++ +        R  + E +  +  A +
Sbjct: 9   DAVGPRLRALRTRRGITLADLSAETGISESTLSRLENGQ-----RRANLELLLPLSRAYD 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I  L+  P +       +      + + P                        +  S 
Sbjct: 64  VPIDDLVGAPRAGDPRVHLRPIHQHGMTYVPLTRRPGGVHAYKMLIPGGTAEPALKTHSG 123

Query: 127 HNGIYAIQTQDTRHKTQDTSMLP 149
           +  +Y +              +P
Sbjct: 124 YEWLYVLNGHLRLIVGAKDLTVP 146


>gi|291294895|ref|YP_003506293.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279]
 gi|290469854|gb|ADD27273.1| transcriptional regulator, XRE family [Meiothermus ruber DSM
          1279]
          Length = 84

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I R+ ++  L+   LA +AG+  +   K +R    G  R PS     K+  A 
Sbjct: 7  IRRLRKQAGLSQEALAVEAGITVSLLTKYER----GEVRRPSLVCSRKLARAL 55


>gi|226315195|ref|YP_002775091.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226098145|dbj|BAH46587.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 443

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ +   I++   +H  T S L+   G++P S ++          R  +   +       
Sbjct: 2   HRWLRSEIEKCRRKHGYTLSKLSELTGINPGSLSEILNGNP---PRAMTIGQLDAFAKVF 58

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
                 L +L   +  + ++  +   + Y       G
Sbjct: 59  GREQGWLYELYPEECLSEQRISRPRLIPYLARCVEVG 95


>gi|218134569|ref|ZP_03463373.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC
          43243]
 gi|217989954|gb|EEC55965.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC
          43243]
          Length = 268

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I ++     ++   LA K  +   + ++ +          P+TE++  +    N +
Sbjct: 14 ILQLRTERGMSQDELAEKIMVTRQAVSRWENGETI-----PNTETLKLLSKEFNVS 64


>gi|126731243|ref|ZP_01747050.1| DNA-binding protein, putative [Sagittula stellata E-37]
 gi|126708154|gb|EBA07213.1| DNA-binding protein, putative [Sagittula stellata E-37]
          Length = 206

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +  + T    A+KAGL  ++ +K +   +      P+ +++ K+      
Sbjct: 25 DLGLRVRELRKEKDWTLEQAAKKAGLARSTLSKIENGQM-----SPTYDALKKLATGLEI 79

Query: 68 TICQLLDLPFSDGRTT 83
          ++ QL   P       
Sbjct: 80 SVPQLFTPPVQAQANG 95


>gi|52842586|ref|YP_096385.1| hypothetical protein lpg2377 [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52629697|gb|AAU28438.1| hypothetical protein lpg2377 [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 75

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +H+ I   I    ++  L+   LA  AG+  T     ++     R       ++ K+L
Sbjct: 1  MPTHE-IANLIHYYRKKSGLSQQELAHLAGVGKTVIYDIEKGKESVR-----LNTLLKVL 54

Query: 63 AATNETICQLLDLPFSDGRTT 83
             N  +      P +    +
Sbjct: 55 DVLNIQMKFETPFPQTTDNNS 75


>gi|25010546|ref|NP_734941.1| hypothetical protein gbs0475 [Streptococcus agalactiae NEM316]
 gi|23094899|emb|CAD46119.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 112

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 5/86 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  +     LT   LA+       +    ++      +R P  +SI K+    N +  
Sbjct: 4  EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKG-----SRNPKHKSIEKLANVFNVSTD 58

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFP 96
           LL             EK    L   
Sbjct: 59 YLLGNTDLKNPNDLDIEKVKQSLKKS 84


>gi|126172576|ref|YP_001048725.1| XRE family transcriptional regulator [Shewanella baltica OS155]
 gi|125995781|gb|ABN59856.1| transcriptional regulator, XRE family [Shewanella baltica OS155]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 15/164 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  +   +    A++ G+      + +R         P+  +++KI +  N +
Sbjct: 8   LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNFS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L+          +K  E+                     G +   + +       +
Sbjct: 63  LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171
             +     +                   ++++     +  G+ +
Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157


>gi|326387376|ref|ZP_08208985.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208032|gb|EGD58840.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 423

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + + I R+     ++ SGLAR AGL   +     +         P+ E++ K+    +E
Sbjct: 4   DLIDRIRRLVTEGGMSRSGLARAAGLHANTLRDLTQANWN-----PTAETLAKLERVLSE 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           +    + +P  +     +  +   L+      + G
Sbjct: 59  SDETQVLVPIEEIIDEARNGRMFILVDDEDRENEG 93


>gi|325262228|ref|ZP_08128966.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324033682|gb|EGB94959.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 643

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +  H+     +    +    T + +A K  +  +++   +        R P  E++ +
Sbjct: 1  MKTKFHE----YLVLFRKLKGYTQAQMAEKLEISRSTYTNYEIGN-----RSPDLETLER 51

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          I      ++ +L             +      +
Sbjct: 52 ISEVLECSLDELFGKTPVRTADMVSETPVPYRV 84


>gi|295101106|emb|CBK98651.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6]
          Length = 110

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   IDR       +   LA  +GL  ++ +  +R  ++     P+  SI KI      
Sbjct: 9   DILGRIDRERLARGWSEYTLAENSGLTQSTLSTWRRRNLQ-----PNVTSIEKICHGLGI 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           T+ Q  +   +    TE+++  + +              
Sbjct: 64  TLSQFFEEDTAVHHLTEEQKSLLTIWDRLSPSQRIAILD 102


>gi|218755745|ref|ZP_03534541.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
          Length = 99

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S +    AI  + E  + + + LA   G+     +  +R       R P   ++ K+  
Sbjct: 1  MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGA-----RKPHKSTVQKVEN 55

Query: 64 ATN 66
             
Sbjct: 56 GLG 58


>gi|308535325|ref|YP_002139718.2| helix-turn-helix transcriptional regulator PuuR [Geobacter
          bemidjiensis Bem]
 gi|308052670|gb|ACH39922.2| helix-turn-helix transcriptional regulator PuuR, cupin
          domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 181

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI E + R+   ++LT   LA +A L     ++ +          PS  ++  I+     
Sbjct: 2  KIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDAT-----SPSIATLKDIVDVFGI 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90
          ++ +             K+ +  
Sbjct: 57 SMQEFFSEETDQDIVFGKEARVQ 79


>gi|153828429|ref|ZP_01981096.1| DNA polymerase V subunit [Vibrio cholerae 623-39]
 gi|148876138|gb|EDL74273.1| DNA polymerase V subunit [Vibrio cholerae 623-39]
          Length = 135

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                       SM  +     D+LI++ ++ V   D ++     G+ + K +     R 
Sbjct: 37  PCATFLGYACGDSMQDVGIFDKDLLIVDRSLDVQDFDIIV-ANLNGEFICKQIDL--NRR 93

Query: 193 IDLMSLNCCYPVDTVEM 209
           + L+S N  Y    +  
Sbjct: 94  L-LLSANERYQPVPIHE 109


>gi|125622890|ref|YP_001031373.1| putative HTH-type transcriptional regulator [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124491698|emb|CAL96617.1| Putative HTH-type transcriptional regulator [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300069628|gb|ADJ59028.1| putative HTH-type transcriptional regulator [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 107

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E I    +  NL+   LA++  +   S +K +          P+T+ +  +    + 
Sbjct: 2   EISEIIKENRKLKNLSQEELAKELHISRQSISKWETGKS-----LPTTDQLILLSEIFDC 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           ++  LL          + +  +   L        GF    +F
Sbjct: 57  SLDTLLKGDKKMEEKVKHEIDDKRTLKLIYKVGWGFIVPLLF 98


>gi|302531744|ref|ZP_07284086.1| predicted protein [Streptomyces sp. AA4]
 gi|302440639|gb|EFL12455.1| predicted protein [Streptomyces sp. AA4]
          Length = 490

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          EA+        LT + LA+  G+  T  +K +     G  +    E I +I +       
Sbjct: 26 EALTAYRNSRGLTQTDLAKLLGIHQTYLSKIE----SGHRKVFDIELILRIASQLELDPE 81

Query: 71 Q 71
          +
Sbjct: 82 E 82


>gi|296450086|ref|ZP_06891848.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296878467|ref|ZP_06902473.1| XRE family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296261094|gb|EFH07927.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296430551|gb|EFH16392.1| XRE family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 78

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          ++ + ++  L     A+   +   + +  +          PS E  F+I      +I ++
Sbjct: 18 VEALRKKKGLNQEDFAKILKVSRQTISSIENGKYN-----PSLELAFQISDFFEMSIEEI 72

Query: 73 LDLPF 77
               
Sbjct: 73 FLWKE 77


>gi|296270730|ref|YP_003653362.1| XRE family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296093517|gb|ADG89469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
           43833]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/179 (9%), Positives = 43/179 (24%), Gaps = 23/179 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  +  +  +T   LA ++ +      + ++         PS  ++ +I  A   +
Sbjct: 11  IAANVRSLRGQRGMTLDELAARSKVSRGMLIQIEQGRTN-----PSINTLNRIAEALGVS 65

Query: 69  ----------ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
                         +  P               LL    + +           G  ++  
Sbjct: 66  IGRLVEVADVPVVRIVQPSEAVTFQHGASSSARLLIGSDAPAILELWDWRLGPGEHYDGD 125

Query: 119 GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL---NSAIQVNCGDRLLIK 174
             P        +   +           S      +G  ++          N G+  +  
Sbjct: 126 AHPPGTREMLTVLEGE---LTLTVYGQS--HTIGEGAAVVFSADRPHRYANHGEGPVRF 179


>gi|299822633|ref|ZP_07054519.1| signal peptidase I [Listeria grayi DSM 20601]
 gi|299816162|gb|EFI83400.1| signal peptidase I [Listeria grayi DSM 20601]
          Length = 180

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 3/82 (3%)

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK 174
           W    V  I       + +            SM+P     D +I+N    ++  D ++ +
Sbjct: 12  WIWAAVIAILLATIIRFYLFVPIF---VDGISMMPSLHNDDRVIINRFANIDRFDVIVFR 68

Query: 175 PRTGDIVAKVLISRRGRSIDLM 196
              G    K +I   G  I   
Sbjct: 69  ENDGTEYIKRVIGLPGDHIRFH 90


>gi|229084128|ref|ZP_04216417.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44]
 gi|228699164|gb|EEL51860.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44]
          Length = 149

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5   ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           +LL       +   +  K++    +       F 
Sbjct: 60  ELLRSDEELKQKVIQDSKQLAHPKWKMFFDSVFM 93


>gi|146321094|ref|YP_001200805.1| Cro/CI family transcriptional regulator [Streptococcus suis
          98HAH33]
 gi|253751963|ref|YP_003025104.1| DNA-binding protein [Streptococcus suis SC84]
 gi|253753788|ref|YP_003026929.1| DNA-binding protein [Streptococcus suis P1/7]
 gi|253755336|ref|YP_003028476.1| DNA-binding protein [Streptococcus suis BM407]
 gi|145691900|gb|ABP92405.1| Transcriptional regulator, Cro/CI family [Streptococcus suis
          98HAH33]
 gi|251816252|emb|CAZ51880.1| putative DNA-binding protein [Streptococcus suis SC84]
 gi|251817800|emb|CAZ55552.1| putative DNA-binding protein [Streptococcus suis BM407]
 gi|251820034|emb|CAR46239.1| putative DNA-binding protein [Streptococcus suis P1/7]
 gi|292558544|gb|ADE31545.1| Transcriptional regulator, Cro/CI family [Streptococcus suis GZ1]
 gi|319758328|gb|ADV70270.1| Cro/CI family transcriptional regulator [Streptococcus suis JS14]
          Length = 71

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 15/40 (37%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   +  +  R  L  + LA+ A +   + +  +R     
Sbjct: 5  LKNRLKELRARDGLNQTELAKLAEVSRQTISLIERGEYTP 44


>gi|254252819|ref|ZP_04946137.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158]
 gi|124895428|gb|EAY69308.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158]
          Length = 232

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 21/174 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA ++G+  +  +  +R         P+   + K+ A  
Sbjct: 40  NERIARRVRDLRATRGYTLDALAARSGVSRSMISLVERASA-----SPTAVVLDKLAAGL 94

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-------------GFFDSGVFPTG 112
             ++  L     +D  T     +     +  P+                       FP G
Sbjct: 95  GVSLAALFSGDRNDTPTLPLVRRAEQAEWRDPASGYVRRNLSPPGWPSPIQLVEVDFPPG 154

Query: 113 NKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            +            H  ++ I+ +         S L   R+GD L +     + 
Sbjct: 155 ARVAYDTGGRDSVMHQQVWVIRGR---IDVTCGSELHELREGDCLAMRLDAPLI 205


>gi|91777117|ref|YP_552325.1| XRE family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689777|gb|ABE32975.1| transcriptional regulator, XRE family [Burkholderia xenovorans
           LB400]
          Length = 208

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     +T   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 30  RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 84

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  L     +          EIP L    +         +   G  +    +
Sbjct: 85  SLDSLFAPQKTPEAIAVSGPHEIPTLSGRDARYQLRVWGPIELAGK-FEWYEL 136


>gi|6010627|gb|AAF01192.1|AF179401_1 putative epoxidase [Sinorhizobium meliloti]
          Length = 176

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 47/189 (24%), Gaps = 25/189 (13%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T      I   I  +  R  L    LA   GL P   +K +R  +     +P+  ++ +I
Sbjct: 8   TELQRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQM-----FPTLPTLLRI 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                  +    +    +      ++++   L  PP      F          + ++  P
Sbjct: 63  AMVFGVGLDHFFNADKEEPLIAIVRKEQRLKLPSPPGEKHPAF---------LFESLDYP 113

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTG 178
                    YA                P        I  +            +  +   G
Sbjct: 114 ASDRRMEAFYAE------FPVDSPPSEPHQHGSAEFIYVAQRSAYSQCEWQGV--RAGYG 165

Query: 179 DIVAKVLIS 187
                 L  
Sbjct: 166 GRCVFRLER 174


>gi|322384169|ref|ZP_08057879.1| transcriptional repressor-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151061|gb|EFX44378.1| transcriptional repressor-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 139

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/110 (10%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + +    T   L+ ++G+     ++ +          PS E + K+    N +  +L
Sbjct: 7   LRDLRKLKGYTIRELSDRSGVSTAYISQLENGNRG----IPSPEVLMKLSEGLNISYEEL 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYF---PPSGSGGFFDSGVFPTGNKWNTVG 119
           +++      ++     + P                  G+  T      + 
Sbjct: 63  MEIAGYLQTSSHSSGGDKPKSPVNLRRFLHENEVIFDGILLTEQDKEWME 112


>gi|300865911|ref|ZP_07110650.1| transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300336081|emb|CBN55808.1| transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 96

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 24/73 (32%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          ++ + ER  LT + +A + G+  TS    +    E            ++   T E +   
Sbjct: 3  LEALRERAGLTRAEVAVRLGISETSVRNWETGRTEPTMTPNKYLEALQLFQCTPEEMATA 62

Query: 73 LDLPFSDGRTTEK 85
               +     + 
Sbjct: 63 SQKSMNQRHKRKP 75


>gi|325677790|ref|ZP_08157432.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324110344|gb|EGC04518.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 197

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 5/63 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I +  E   LT +  A   G    +  + +        R P    +  I       
Sbjct: 137 IGRKIQKYREERGLTRNEFAEMLGCVMPTIQRWESGT-----RVPDVTMLMHIAKVLGVG 191

Query: 69  ICQ 71
           +  
Sbjct: 192 VED 194


>gi|289434995|ref|YP_003464867.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b
          str. SLCC3954]
 gi|289171239|emb|CBH27781.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b
          str. SLCC3954]
          Length = 115

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +  E I +  +        LA + G+  ++  + +   IE        +S+  IL  T  
Sbjct: 2  QTGERIKKRRKELGYNADYLAEELGVSRSTIFRYENGEIEKLPITI-LDSLSNILKTTPA 60

Query: 68 TICQLLDLPFSD 79
           +   +D     
Sbjct: 61 YLMGWVDDGAEH 72


>gi|253690628|ref|YP_003019818.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757206|gb|ACT15282.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 188

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 28/103 (27%), Gaps = 6/103 (5%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +H +I   +  + +    + +  + + G+      + +R         P+  +++KI  
Sbjct: 5   LTH-RIGNTLKTLRQEKGWSLTRSSEETGVSKAMLGQIERGES-----SPTVATLWKIAT 58

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
             N      +    ++     +                     
Sbjct: 59  GLNVAFSTFIQPTLAEEDVAYRSVANSAFREREAGMHVVPIFP 101


>gi|227112403|ref|ZP_03826059.1| putative DNA-binding protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 197

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++  +I R  ER NL+ + LA++AGL  ++ ++ +          PS E+++ +  A + 
Sbjct: 22  RLAVSIRRERERLNLSVTELAKRAGLAKSTLSQLETGIGN-----PSLETLWALAMALDV 76

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPL 92
            + QL+  P    +     E     
Sbjct: 77  QVSQLIGQPRQHVQVIRANEGAATY 101


>gi|269957018|ref|YP_003326807.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305699|gb|ACZ31249.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 190

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +    +   LT S LA + GL  ++ ++ +R  I      P+ E +  +     
Sbjct: 9   DNVGPRLRAFRQALRLTLSDLAEQTGLTSSTISRLERSQIR-----PTLEQLLPLARVYG 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE--IR 124
             + +L+  P         +      L F P G                + +  P     
Sbjct: 64  VPLDELVAAPAHGDPRVHLRPIRRDGLTFVPLGINRGQLQAYKVIYPPESRMASPRYHSH 123

Query: 125 SPHNGIYAIQTQDTRH 140
           +    +Y +  +    
Sbjct: 124 AGREWLYVLHGEVRLV 139


>gi|218134755|ref|ZP_03463559.1| hypothetical protein BACPEC_02658 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990140|gb|EEC56151.1| hypothetical protein BACPEC_02658 [Bacteroides pectinophilus ATCC
           43243]
          Length = 187

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 47/144 (32%), Gaps = 7/144 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   SH  +   + R+ +   ++   +A + G+  +   + ++         PS   + K
Sbjct: 1   MDYLSH-NVSVNLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTAN-----PSLGVLGK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I +       +L+D P  D      +E                F      +   +  + V
Sbjct: 55  ITSGLRIEFQELIDPPRIDNCLVSPEEIIPTKEMLGQYKVWTCFPYEDSQSVEVY-RIDV 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
               +  +G +  +T++    T  
Sbjct: 114 EPGGTYTSGSHGEKTREYIAVTDG 137


>gi|229815066|ref|ZP_04445403.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM
          13280]
 gi|229809296|gb|EEP45061.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM
          13280]
          Length = 391

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  +     +T   LA   G+   S  K +         +P  + + K+      ++  
Sbjct: 6  NLQYLRAERRMTQEQLAMLLGVSRQSVTKWE-----AEKSYPEMDKLIKMCQIFECSLDD 60

Query: 72 LLDLPFSDGRTTEKK 86
          L+    S      + 
Sbjct: 61 LVQGDVSRHGVPSRD 75


>gi|158421618|ref|YP_001527845.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
 gi|158342861|gb|ABW35147.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
          Length = 610

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 50/165 (30%), Gaps = 7/165 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  +    +LT   LA + G+   + N+ +  G   + +  + E+I  +         + 
Sbjct: 14  LRTIRSALDLTQEQLAERLGVSFATVNRWEGGGN--KPQRAAQETILALAREAGVEGAES 71

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-----NTVGVPEIRSPH 127
                +  + T ++                 +D+     G K      + +         
Sbjct: 72  PSAADAAAQVTRRRTGRAAAAPTTKPMEQMLWDAACSIRGEKEAAKFKDYLLPLLFLKRL 131

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           + ++  + +    +  D +      + D  +L   +       ++
Sbjct: 132 SDVFDDEIERLAEEYGDRATALEIAESDHSLLRFYLPPEARWTVI 176


>gi|332662498|ref|YP_004445286.1| helix-turn-helix domain-containing protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332331312|gb|AEE48413.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
          1100]
          Length = 102

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++I +    + ++   + S LA+++G+   S    KRF   G+    S   +  +L   
Sbjct: 21 QEIAKRHKVLRKQAGFSQSELAKRSGVSLGSL---KRFETIGQISLESLLLLADVLNRL 76


>gi|302876490|ref|YP_003845123.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
 gi|307687161|ref|ZP_07629607.1| transcriptional regulator, XRE family protein [Clostridium
          cellulovorans 743B]
 gi|302579347|gb|ADL53359.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
          Length = 69

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 4  FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
           S + I +  +       N++   LAR  G+   + +  +        +
Sbjct: 1  MSEELILKNRLKVARAEKNISQGELARMVGVSRQTISSIETGHFNPTAK 49


>gi|259418447|ref|ZP_05742365.1| transcriptional regulator, XRE family [Silicibacter sp.
          TrichCH4B]
 gi|259345842|gb|EEW57686.1| transcriptional regulator, XRE family [Silicibacter sp.
          TrichCH4B]
          Length = 133

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           + +    E   +T   LAR+ G+  T+    ++   E R    S  S
Sbjct: 17 GDRVAAARESAGMTQGQLARRMGVKKTTLIGWEQDLSEPRANKLSMLS 64


>gi|258653368|ref|YP_003202524.1| IstB domain-containing protein ATP-binding protein [Nakamurella
           multipartita DSM 44233]
 gi|258556593|gb|ACV79535.1| IstB domain protein ATP-binding protein [Nakamurella multipartita
           DSM 44233]
          Length = 721

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 21/149 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI---- 58
             + ++  +A      R   + S +AR  G D  +             R P+   +    
Sbjct: 1   MLTQEEDVDA--HALRRRGWSISAIARHLGKDRKTIRAYLNGERTAGVRSPAGPDVFEPF 58

Query: 59  -----FKILAATNETIC----------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
                 +++   +                   P        +  + +     P  G    
Sbjct: 59  VTYCRERLVEDPHLWATALYDELLQLGYDRSYPRLTHNLRTRGLRPVCHACRPAGGRPAA 118

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                     +W+ + +P+     +G  A
Sbjct: 119 VIDHPPAEETQWDWLELPDPPRSWDGYGA 147


>gi|225378210|ref|ZP_03755431.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans
          DSM 16841]
 gi|225209941|gb|EEG92295.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans
          DSM 16841]
          Length = 201

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              KI + I    +R   T   L+ K  +   + +K +R        +P    +  +  
Sbjct: 1  MDQIKIGKFIADERKRKGYTQKQLSEKLAISDKTISKWERGNG-----FPEVSLLLPLCN 55

Query: 64 ATNETICQ 71
              T+ +
Sbjct: 56 ELEITVNE 63


>gi|167749809|ref|ZP_02421936.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702]
 gi|167657292|gb|EDS01422.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702]
          Length = 301

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 10/158 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I    ++ N+T   LA    +   + +K +         +P T+ +  +      T
Sbjct: 3   LGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTA-----FPETDKLITLSDYFGCT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+     +  T +    +  +  F  +   G              T+    +     
Sbjct: 58  LDELIKGSAEENFTEDAAGYDKEMNSFTSAICLGTAIVL-----AGVTTLLFTVVLGLDE 112

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            I A              ++   R  + +  N  I+  
Sbjct: 113 TIAAAIFMLFVTVGTAIFIVSGIRHDNYVKENPNIKPF 150


>gi|146318886|ref|YP_001198598.1| Cro/CI family transcriptional regulator [Streptococcus suis
          05ZYH33]
 gi|145689692|gb|ABP90198.1| transcriptional regulator, Cro/CI family [Streptococcus suis
          05ZYH33]
          Length = 69

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 15/40 (37%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   +  +  R  L  + LA+ A +   + +  +R     
Sbjct: 3  LKNRLKELRARDGLNQTELAKLAEVSRQTISLIERGEYTP 42


>gi|49078644|gb|AAT49805.1| PA1359 [synthetic construct]
          Length = 219

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 16/180 (8%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R+  +  L+   LAR A +        +   +       S  ++ +I AA  
Sbjct: 43  EHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVN-----VSLSTLDRIAAALG 97

Query: 67  ETICQLLDLPFSDGRT-------TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                L+  P +D              E    LL   P+       +     G     V 
Sbjct: 98  VLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSL--GPGERYVS 155

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR--LLIKPRT 177
            P+       +  I+ +           +                VN GD   ++   R 
Sbjct: 156 KPDAAGWREIVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDGDEVVRFTRN 215


>gi|75759574|ref|ZP_00739662.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74492952|gb|EAO56080.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 75

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M + +   I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 1  MVNLT---ILNRVKELRARFNFSQSVLAEKVGVTRQTVAAIEKG 41


>gi|328464227|gb|EGF35672.1| transcriptional regulator xre family protein [Lactobacillus
          rhamnosus MTCC 5462]
          Length = 236

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I    ++  +T   LA   G+   S +K +         +P    +  + A  + 
Sbjct: 4  NVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQS-----YPDITLLPILAAYFDV 58

Query: 68 TICQLLDLPFSDGRTTEKKEK 88
          +I QL+        +  ++  
Sbjct: 59 SIDQLMAYDAQLQPSEIRRIY 79


>gi|326772583|ref|ZP_08231867.1| DNA-binding protein [Actinomyces viscosus C505]
 gi|326637215|gb|EGE38117.1| DNA-binding protein [Actinomyces viscosus C505]
          Length = 103

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI-EGRNRWPSTESIFKILAATN 66
          ++   + R      L+   LA  AG+   ++ K ++     G    P   ++  +  A +
Sbjct: 32 QLGLRLQRARIAKGLSQEALAHAAGISSYTYQKFEKGESRPGTPMNPRLRTLIALATALD 91

Query: 67 ETICQ 71
            + +
Sbjct: 92 MQVEE 96


>gi|325567650|ref|ZP_08144317.1| XRE family transcriptional regulator [Enterococcus casseliflavus
           ATCC 12755]
 gi|325159083|gb|EGC71229.1| XRE family transcriptional regulator [Enterococcus casseliflavus
           ATCC 12755]
          Length = 172

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 14/141 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +    E   L+ + +A K  +   S +K +         +P  E++  +      +
Sbjct: 3   LAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRG-----YPDIENLILLSDLYQVS 57

Query: 69  ICQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           I +       L +   ++ +    K++++ LL    +         +   G    +   P
Sbjct: 58  IDELLRENEALKERIETNNQEINDKKEKLSLLQRTMATEKDESLLLLLLAGIG--SFLFP 115

Query: 122 EIRSPHNGIYAIQTQDTRHKT 142
                   +     +      
Sbjct: 116 LGLILDGFVLWRNKKANNFYV 136


>gi|313897568|ref|ZP_07831110.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312957520|gb|EFR39146.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 302

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E + ++ +   ++   LA +  +   + +K +         +P TE +  I    + T+
Sbjct: 4  GEKLQKLRKEKGMSQEELAARLHVSRQAVSKWENDQG-----YPETEKMLMIGNIFSVTM 58

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLY 94
            LL     D    +        + 
Sbjct: 59 DYLLKDEGGDQPQEQGFYASRECVQ 83


>gi|253565785|ref|ZP_04843240.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946064|gb|EES86471.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 100

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I+   ++  +T + LAR+ G + +  ++ +    + R     T ++++I+ A    I
Sbjct: 40 GKIIEDARKKAKVTQAELARRIGSNRSYISRVESGQTDLR-----TSTLYRIMNALGCQI 94

Query: 70 CQLL 73
             +
Sbjct: 95 EFNM 98


>gi|229550962|ref|ZP_04439687.1| XRE family transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
 gi|258538327|ref|YP_003172826.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc
          705]
 gi|229315677|gb|EEN81650.1| XRE family transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
 gi|257150003|emb|CAR88975.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc
          705]
          Length = 373

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I    ++  +T   LA   G+   S +K +         +P    +  + A  + 
Sbjct: 4  NVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQS-----YPDITLLPILAAYFDV 58

Query: 68 TICQLLDLPFSDGRTTEKKEK 88
          +I QL+        +  ++  
Sbjct: 59 SIDQLMAYDAQLQPSEIRRIY 79


>gi|227494440|ref|ZP_03924756.1| possible transcriptional regulator [Actinomyces coleocanis DSM
           15436]
 gi|226832174|gb|EEH64557.1| possible transcriptional regulator [Actinomyces coleocanis DSM
           15436]
          Length = 354

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 10/109 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  +     LT   LA   G+   + +K +         +P  + +  I      T+ 
Sbjct: 29  ENLQHLRSTRGLTQERLAVLLGVSRQAISKWESDRA-----YPEMDKLLTICDLFGCTLD 83

Query: 71  Q-----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +     L              +   P+  +    +     +     G  
Sbjct: 84  ELVTGDLRTTDADTLEDPLVSQAVSPVQDYTGYDAHMRGFAWKIAAGMG 132


>gi|255281979|ref|ZP_05346534.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
           14469]
 gi|255267652|gb|EET60857.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
           14469]
          Length = 215

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +  + +R  LT   LA  AG+   +  + ++            E + K+      +
Sbjct: 151 NLKLLRKRAGLTQRELAEYAGIPLRTIQQYEQRQKNINRAQ--AEYLVKLAKVLCCS 205


>gi|171056856|ref|YP_001789205.1| XRE family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774301|gb|ACB32440.1| transcriptional regulator, XRE family [Leptothrix cholodnii SP-6]
          Length = 200

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            + +  AI    +RH LT + ++ +A +     +K +             +++ +I  A 
Sbjct: 13  EESVGAAIKEQRQRHGLTIAQVSEQASISRGMLSKIENGQTSA-----GMDTLARIARAL 67

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
             ++  L         + +  +K + +         G   
Sbjct: 68  GVSMSMLFSKYDVTASSAQHIKKGMGMEVVRRGTKNGHTY 107


>gi|89101267|ref|ZP_01174087.1| hypothetical protein B14911_01154 [Bacillus sp. NRRL B-14911]
 gi|89084017|gb|EAR63198.1| hypothetical protein B14911_01154 [Bacillus sp. NRRL B-14911]
          Length = 110

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +  + + + +T   LA   G+D T  +K +   +E     P+ + I KI    N+   +
Sbjct: 8  LKDLRKEYRITQRKLADLIGIDFTYISKIENGSMEP----PAEDKIIKIADVFNKDANE 62


>gi|332665384|ref|YP_004448172.1| helix-turn-helix domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334198|gb|AEE51299.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 495

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 2   TSFSHKKIWEAID--RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           T   +++I   +   ++ +R +L+ + L+ KAG+  +  N+ ++       ++P  E I 
Sbjct: 3   TKAQNERILFGLKVKQLRQRLSLSFADLSEKAGMSVSYLNEIEKG-----KKYPKGEKIQ 57

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG--FFDSGVFPTGNKWNT 117
            +  A N +   L      +G        +   L   P    G           G     
Sbjct: 58  TLARALNVSATDLASQDVDEGLAPVHDLLQSNFLNELPLERFGIDLAKVVEIIAGAPSRV 117

Query: 118 VGVPEIRSPHNGIYAIQTQDTRH 140
                     +  YA++ +    
Sbjct: 118 GAFISTLLELSRNYALRQEHFYF 140


>gi|304436882|ref|ZP_07396846.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370081|gb|EFM23742.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 229

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + ++R+ +   +T + LA    +  T+ +   +       R    + +          + 
Sbjct: 92  DNLNRLLQERGITQAELAAYMEVSNTTISNWVKGYKV--PRMDKVDKLCSFFKIKRSELL 149

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYF 95
           +           T K E+EI  L  
Sbjct: 150 EQPPASGDLPDLTPKDEREIMHLMD 174


>gi|296157333|ref|ZP_06840169.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295892669|gb|EFG72451.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 229

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 32  VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L    ++G      E+   L+      S         PT  +++ + +  + +   
Sbjct: 87  VAAFLRRHATNGFEHLPAERSSRLVSSNGRYSARPLYPDAEPTAAEFHELRIAPLHTEAG 146

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
              A           + ++         L+
Sbjct: 147 TRRA-PGTTVNLVVSEGTLEVSVHDQRQLL 175


>gi|291525583|emb|CBK91170.1| Predicted transcriptional regulators [Eubacterium rectale DSM
           17629]
 gi|291528262|emb|CBK93848.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 167

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 46/162 (28%), Gaps = 15/162 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I +  +  ++T   L++++G+  ++  K +        R P  + + KI  A   +
Sbjct: 7   IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGE-----RNPKPDQLQKIAEALGIS 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   LD   +          ++         +    D    P+           I     
Sbjct: 62  VTVFLDYDINTVSDVLSLVMKLNEQSSLKISADKDKDGNYIPS----------SIHMTFE 111

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                +   +    +    L  Y   D  ++    +      
Sbjct: 112 DSQINEAICSYLNCKQQMDLISYEDNDKAVIEQQKEFYDDKI 153


>gi|259047950|ref|ZP_05738351.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175]
 gi|259035370|gb|EEW36625.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175]
          Length = 166

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E I  + +    +   LA +  +   S +K +          P  E I ++      
Sbjct: 3   KLAEKIYNLRKEKGWSQETLAEQIKVSRQSISKWESGQAV-----PEIEKIIELSTIFQV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           T   LL    +      +  ++    Y+    S G +     
Sbjct: 58  TTDYLLLDENTTKSQKIELTEDEKDRYYKEVKSFGRWQVIYI 99


>gi|251782834|ref|YP_002997137.1| Cro/CI family transcriptional regulator [Streptococcus
          dysgalactiae subsp. equisimilis GGS_124]
 gi|242391464|dbj|BAH81923.1| transcriptional regulator, Cro/CI family [Streptococcus
          dysgalactiae subsp. equisimilis GGS_124]
 gi|323127639|gb|ADX24936.1| Transcriptional regulator, Cro/CI family protein [Streptococcus
          dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 71

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +  R  +  + +A+ AG+   + +  +R         PS     KI     E 
Sbjct: 5  LKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYT-----PSIVIAMKIAKVFQEP 59

Query: 69 ICQLLDLPF 77
          +  +  L  
Sbjct: 60 VEDVFRLVE 68


>gi|238793272|ref|ZP_04636899.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC
          29909]
 gi|238727440|gb|EEQ18967.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC
          29909]
          Length = 193

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
           +I R  E+  LT + LA++AG+  ++ ++ +          PS E+++ + 
Sbjct: 21 ASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGN-----PSLETLWSLA 67


>gi|229521883|ref|ZP_04411300.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM
           11079-80]
 gi|229340808|gb|EEO05813.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM
           11079-80]
          Length = 181

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 42/155 (27%), Gaps = 16/155 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + ++ +   L+    A+  G+      + +R         P+  +++KI +    
Sbjct: 9   QIANQLKKLRKSRGLSLDATAQLTGVSKAMLGQIERGES-----SPTIATLWKIASGFEA 63

Query: 68  TI-----CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           +           L        +   K   L  +        F+  +         +  P 
Sbjct: 64  SFSAFFANDPQLLSSERSFPDDPNMKVHTLFPYAADTGLEIFEITLLDHHQ---QMSSPH 120

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                  IY ++      K          +  + +
Sbjct: 121 ALGVIEYIYVLEG---VMKVFFDEQWHELQPREHI 152


>gi|253701275|ref|YP_003022464.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251776125|gb|ACT18706.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 65

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ ++ E   ++ + LAR AG+ P + ++ +R            E+  KIL A   +
Sbjct: 2  IMNSVKKLREERLMSKAELARLAGVSPITIDRIERGE------DCRMETKRKILLALGFS 55

Query: 69 ICQ 71
          +  
Sbjct: 56 LSD 58


>gi|167761576|ref|ZP_02433703.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC
          35704]
 gi|167660719|gb|EDS04849.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC
          35704]
          Length = 476

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I    +  N +   +A   G+   + +K ++         PSTE+I ++      +
Sbjct: 8  LGKNIASRRKSQNFSQEDIATLVGVSRQAVSKWEKDLS-----SPSTENIIRLAEILRVS 62

Query: 69 ICQ 71
          + +
Sbjct: 63 VEE 65


>gi|163737611|ref|ZP_02145028.1| transcriptional regulator, XRE family protein [Phaeobacter
          gallaeciensis BS107]
 gi|161389137|gb|EDQ13489.1| transcriptional regulator, XRE family protein [Phaeobacter
          gallaeciensis BS107]
          Length = 81

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          T+ + ++I EA+ R  +    T S ++ +  L   + +  +      +
Sbjct: 4  TARTAEQIGEALRRTRKARGWTQSDISARTNLRVATISSLENGDAGAK 51


>gi|160944849|ref|ZP_02092076.1| hypothetical protein FAEPRAM212_02365 [Faecalibacterium
          prausnitzii M21/2]
 gi|158444033|gb|EDP21037.1| hypothetical protein FAEPRAM212_02365 [Faecalibacterium
          prausnitzii M21/2]
          Length = 110

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   IDR       +   LA  +GL  ++ +  +R  ++     P+  SI KI      
Sbjct: 9  DILGRIDRERLARGWSEYTLAENSGLTQSTLSTWRRRNLQ-----PNVTSIEKICHGLGI 63

Query: 68 TICQLLDLPFSDGR 81
          T+ Q  +   +   
Sbjct: 64 TLSQFFEEDAAVHH 77


>gi|114763961|ref|ZP_01443202.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601]
 gi|114543553|gb|EAU46567.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601]
          Length = 131

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + I    E   +    LAR+ G+   + +  +    E   R    + +  +L 
Sbjct: 16 GDRIAAAREAAGMGQEKLARRLGVKLKTLHGWENDLAE--PRANKLQMLAGLLN 67


>gi|255973582|ref|ZP_05424168.1| CylR2 [Enterococcus faecalis T2]
 gi|256959429|ref|ZP_05563600.1| CylR2 [Enterococcus faecalis DS5]
 gi|256960245|ref|ZP_05564416.1| CylR2 [Enterococcus faecalis Merz96]
 gi|257080295|ref|ZP_05574656.1| CylR2 [Enterococcus faecalis JH1]
 gi|257423074|ref|ZP_05600064.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|307277414|ref|ZP_07558507.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307285036|ref|ZP_07565186.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|307292300|ref|ZP_07572161.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|312904701|ref|ZP_07763852.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|55670390|pdb|1UTX|A Chain A, Regulation Of Cytolysin Expression By Enterococcus
          Faecalis: Role Of Cylr2
 gi|55670391|pdb|1UTX|B Chain B, Regulation Of Cytolysin Expression By Enterococcus
          Faecalis: Role Of Cylr2
 gi|146386808|pdb|2GZU|A Chain A, High-Resolution Structure Determination Of The Cylr2
          Homodimer Using Intermonomer Distances From
          Paramagnetic Relaxation Enhancement And Nmr Dipolar
          Couplings
 gi|146386809|pdb|2GZU|B Chain B, High-Resolution Structure Determination Of The Cylr2
          Homodimer Using Intermonomer Distances From
          Paramagnetic Relaxation Enhancement And Nmr Dipolar
          Couplings
 gi|322812210|pdb|2XI8|A Chain A, High Resolution Structure Of Native Cylr2
 gi|322812211|pdb|2XI8|B Chain B, High Resolution Structure Of Native Cylr2
 gi|18139790|gb|AAL60140.1|AF394225_2 CylR2 [Enterococcus faecalis]
 gi|18104290|gb|AAL59476.1| putative transcription regulator [Enterococcus faecalis]
 gi|255966454|gb|EET97076.1| CylR2 [Enterococcus faecalis T2]
 gi|256949925|gb|EEU66557.1| CylR2 [Enterococcus faecalis DS5]
 gi|256950741|gb|EEU67373.1| CylR2 [Enterococcus faecalis Merz96]
 gi|256988325|gb|EEU75627.1| CylR2 [Enterococcus faecalis JH1]
 gi|257164898|gb|EEU94858.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|306496655|gb|EFM66211.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306502937|gb|EFM72197.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306505903|gb|EFM75080.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|310631956|gb|EFQ15239.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|315163478|gb|EFU07495.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
 gi|329569606|gb|EGG51374.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 66

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +  + E+  ++ S LA    +   + N  ++         PS +   KI    N  
Sbjct: 2  IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYN-----PSLQLALKIAYYLNTP 56

Query: 69 ICQLLDLP 76
          +  +    
Sbjct: 57 LEDIFQWQ 64


>gi|323492256|ref|ZP_08097414.1| putative helix-turn-helix regulatory protein [Vibrio brasiliensis
          LMG 20546]
 gi|323313569|gb|EGA66675.1| putative helix-turn-helix regulatory protein [Vibrio brasiliensis
          LMG 20546]
          Length = 185

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +I   + R  +R  L+ S +A++A +  ++ ++ +          PS E+++ 
Sbjct: 3  MKKPPIAQIAATLSRERQRSGLSLSEVAKRAQIAKSTLSQLENGAGN-----PSIETLWS 57

Query: 61 ILAATNETI 69
          I    +   
Sbjct: 58 ICVVLDIPF 66


>gi|317494163|ref|ZP_07952579.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316917936|gb|EFV39279.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 154

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +  E +  +     ++    A + G   +  ++ +R G        S ++I  
Sbjct: 1  MKKTLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55

Query: 61 ILAATNETIC 70
          +  A N    
Sbjct: 56 LAGALNVEPW 65


>gi|308175926|ref|YP_003915332.1| transcriptional regulator [Arthrobacter arilaitensis Re117]
 gi|307743389|emb|CBT74361.1| putative transcriptional regulator [Arthrobacter arilaitensis
          Re117]
          Length = 65

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +    + H  +   LA   G+   +    ++   +     PS    FK+ A     I 
Sbjct: 3  NNLSEYRKEHGFSQQALADLLGVSRQTIISLEKGRYD-----PSLPLAFKLSAVFGCKIE 57

Query: 71 QLLDLPF 77
           L     
Sbjct: 58 DLFIPGE 64


>gi|291556308|emb|CBL33425.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a]
          Length = 301

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 10/158 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I    ++ N+T   LA    +   + +K +         +P T+ +  +      T
Sbjct: 3   LGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTA-----FPETDKLITLSDYFGCT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+     +  T +    +  +  F  +   G              T+    +     
Sbjct: 58  LDELIKGSAEENFTEDAAGYDKEMNSFTSAICLGTATVL-----AGVTTLLFTVVLGLDE 112

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
            I A              ++   R  + +  N  I+  
Sbjct: 113 TIAAAIFMLFVTVGTAIFIVSGIRHDNYVKENPNIKPF 150


>gi|260174585|ref|ZP_05760997.1| hypothetical protein BacD2_22192 [Bacteroides sp. D2]
 gi|315922848|ref|ZP_07919088.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696723|gb|EFS33558.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 152

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 6/76 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I +AID   E+  L+ S   R+ G+     N+          R      + K+    N  
Sbjct: 10 IGKAIDEQREKLKLSKSEFGRRIGVPQQHVNRILERDTMETKR------LVKVCQELNFN 63

Query: 69 ICQLLDLPFSDGRTTE 84
             L     +   +  
Sbjct: 64 FFSLFCPLHTQQISAY 79


>gi|297562433|ref|YP_003681407.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296846881|gb|ADH68901.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 287

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +   +++   + R+ E H  T    A+++G+   +  K +      R R    +++  +
Sbjct: 7  PTIRRRRLGFELRRLREEHGFTLDDAAKRSGVPRATIGKIETAESR-RTRARDLDALADL 65

Query: 62 LAATNETICQLLDLPFSDGRTTE 84
               E    L  L         
Sbjct: 66 YNLDEEGRAGLHQLSRESKEKGW 88


>gi|284991477|ref|YP_003410031.1| XRE family transcriptional regulator [Geodermatophilus obscurus
          DSM 43160]
 gi|284064722|gb|ADB75660.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
          DSM 43160]
          Length = 195

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/83 (10%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +  R   T + L+ + G+  ++ ++ +        R P+ E +  +  +    
Sbjct: 14 VGPRLRALRVRRGRTLAQLSEETGISVSTLSRLESGQ-----RRPTLELLLPLARSHRVP 68

Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91
          + +L+  P +       +     
Sbjct: 69 LDELVGAPETGDPRVHPRPVVHH 91


>gi|222034354|emb|CAP77095.1| Phage repressor protein cI [Escherichia coli LF82]
          Length = 210

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 28/214 (13%)

Query: 11  EAIDRMAERHNLT-PSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68
            AI+R+ E +  T    L+    +  ++  N+  R            + I +    T  +
Sbjct: 14  AAIERLLEAYGFTTKQALSEHLNVSKSTMANRVLRD-------SFPADWIIQCALETGVS 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRS 125
           +  L     S      + EK                 +   P G   N   ++   EI  
Sbjct: 67  LLWLATGQGSMKG-GAEPEKSSHNENKQAIKPLSKLITPAIPKGTLENGQLSID-EEIFL 124

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            H+ + A   +    +T               +++ +I+        +    G I+   +
Sbjct: 125 DHSILPADYEESMFLETPTDCY----------LIDKSIKQVSNGF-WLINIDGMIIVAKI 173

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   G  I +   N           D+E I R +
Sbjct: 174 MRIPGNKIVV---NQDEASFECSTDDVEVIGRAV 204


>gi|226324192|ref|ZP_03799710.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758]
 gi|225207741|gb|EEG90095.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758]
          Length = 169

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          E I R+ +   L+   LA K  +   + +K +      
Sbjct: 4  ENIKRIRKSKGLSQEELAIKLNVVRQTVSKWENGLSVP 41


>gi|229815060|ref|ZP_04445397.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM
           13280]
 gi|229809290|gb|EEP45055.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM
           13280]
          Length = 155

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 27/105 (25%), Gaps = 4/105 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +A+ +      LT   LA +  +   + ++ +    E          I + L      
Sbjct: 4   LKDALAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKL--IARELDVPVTR 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +  + +           +  +              F    +  G 
Sbjct: 62  LLDMPEHYCQSCGMMFTEPGQRGHE--ADGTETDEFCRWCYDKGA 104


>gi|160887303|ref|ZP_02068306.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483]
 gi|237713191|ref|ZP_04543672.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262409416|ref|ZP_06085958.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|294647377|ref|ZP_06724970.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides ovatus SD CC 2a]
 gi|294809001|ref|ZP_06767723.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides xylanisolvens SD CC 1b]
 gi|156107714|gb|EDO09459.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483]
 gi|229446849|gb|EEO52640.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262352628|gb|EEZ01726.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292637336|gb|EFF55761.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides ovatus SD CC 2a]
 gi|294443726|gb|EFG12471.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295087084|emb|CBK68607.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A]
          Length = 132

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 9/114 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  + + I+R+     +T + L +  G+   + +K ++            E + KI +A 
Sbjct: 11  HLHLGKKIERVRRLRGMTQTELGQLLGITKQAVSKMEQTEK------IDDERLEKIASAL 64

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
             T   L +              E   +      +  F     FP         
Sbjct: 65  GVTTDGLKEYNEETVLYNTNNFYENCGVKNAIGNNQTF---NNFPIEQTIELFE 115


>gi|15613851|ref|NP_242154.1| transcriptional repressor of PBSX genes [Bacillus halodurans
          C-125]
 gi|10173904|dbj|BAB05007.1| transcriptional repressor of PBSX genes [Bacillus halodurans
          C-125]
          Length = 112

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +  +     L+   LA+  GL+ ++  + +    +     P  E++ K+     
Sbjct: 4  GKRLRSLRINKKLSQEELAKTLGLNRSTLARYELENTQ-----PDYETLTKMADFFQ 55


>gi|331268175|ref|YP_004385884.1| putative prophage repressor [Clostridium botulinum BKT015925]
 gi|329127725|gb|AEB77665.1| putative prophage repressor [Clostridium botulinum BKT015925]
          Length = 108

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  + +   L  S  A+  GL     +  ++       R  +   I +I   +   
Sbjct: 3  ERIKELRKLKGLNQSTFAKSLGLSQNHISSIEKGVRGLTTRTIN--DICRIYNVSPNW 58


>gi|291526790|emb|CBK92376.1| Helix-turn-helix [Eubacterium rectale M104/1]
          Length = 109

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I  +  + NLT   LA + G+  ++  K +        R  S  ++FKI+     
Sbjct: 7   QVGIVIKSLRIQRNLTKEALAAELGISVSTIKKYENGE-----RALSITNLFKIIDYFKV 61

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
               +L++       +     E+            F +      
Sbjct: 62  DANTILNVAEGKKENSIDSRLELMDYSRKAYFQKIFNEMLDNAE 105


>gi|282862576|ref|ZP_06271637.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282562262|gb|EFB67803.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 477

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  + R+   H +    +AR  G+  +  N+ ++       R  +   + +I     
Sbjct: 13 YAKLRRLRREHGMNQVDMARALGISTSYANQIEQ-----SRRPLTASVLLRIAEVFG 64


>gi|242240962|ref|YP_002989143.1| XRE family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242133019|gb|ACS87321.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703]
          Length = 189

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 39/136 (28%), Gaps = 7/136 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE------SIFKI 61
           ++ E +  +      +   LA  + +   + ++ +R                   ++ ++
Sbjct: 11  RLSERLSALRRERGWSLDELALNSDISRATLSRMERGETSPTAALLGRLCVVYGCTMSRL 70

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           LA       Q L+          +       +  P +G       G  P   +      P
Sbjct: 71  LAEVETPSPQKLEPGQQTVWVDPETGFVRRSVSPPVNGFNAEMILGQLPASARIEYNA-P 129

Query: 122 EIRSPHNGIYAIQTQD 137
            I    + +Y +  + 
Sbjct: 130 PIYGLEHHLYVLDGRL 145


>gi|257053776|ref|YP_003131609.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
           12940]
 gi|256692539|gb|ACV12876.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
           12940]
          Length = 299

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/160 (8%), Positives = 41/160 (25%), Gaps = 1/160 (0%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +        LT   +A + G+  ++ +K     ++   R    E + ++     + +   
Sbjct: 20  LAERLRDRGLTQLEVADQLGISQSAVSKYAHGEVDRNERLLEDERLQELTDRLADGLAAG 79

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
              P       E   +++             F       G          +R       +
Sbjct: 80  DVSPVQALAEAEVFVRQLEQGDLLAQLHEESFSPLAEHAGTLAIHDPESRVRQSEQVRSS 139

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           ++      +   +    L       ++         D ++
Sbjct: 140 VRRGLGMLE-NASGFARLIPAVGSNLVECVPDAEGIDDVV 178


>gi|218559582|ref|YP_002392495.1| phage regulatory protein cI [Escherichia coli S88]
 gi|218366351|emb|CAR04102.1| phage regulatory protein cI [Escherichia coli S88]
          Length = 210

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 28/214 (13%)

Query: 11  EAIDRMAERHNLT-PSGLARKAGLDPTSF-NKSKRFGIEGRNRWPSTESIFKILAATNET 68
            AI+R+ E +  T    L+    +  ++  N+  R            + I +    T  +
Sbjct: 14  AAIERLLEAYGFTTKQALSEHLNVSKSTMANRVLRD-------SFPADWIIQCALETGVS 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG---NKWNTVGVPEIRS 125
           +  L     S  +   + EK                 +   P G   N   ++   EI  
Sbjct: 67  LLWLATGQGSM-KEGYESEKRSHNENKQAIKPLSKLITPSIPKGTLENGQLSID-EEIFL 124

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
            H+ + A   +    +T               +++ +++        +    G I+   +
Sbjct: 125 DHSILPADYEESMFLETPTDCY----------LIDKSVKQVSNGF-WLINIDGMIIIAKI 173

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219
           +   G  I +   N           D+E I R +
Sbjct: 174 MRIPGNKIVV---NQDEASFECSADDVEVIGRAV 204


>gi|209524323|ref|ZP_03272872.1| transcriptional regulator, XRE family [Arthrospira maxima CS-328]
 gi|209495114|gb|EDZ95420.1| transcriptional regulator, XRE family [Arthrospira maxima CS-328]
          Length = 151

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 29/105 (27%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I +  +    +   LA   G+D T  +K +    +   +      + + L    E +  L
Sbjct: 47  IRQARKDRGYSQRELAGLLGVDFTYLSKLENDRADYAPKEEVIRGLARNLGIDEEELIFL 106

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                       K+        F        F   VF   +  + 
Sbjct: 107 AGRIPHHYENFLKQNNREITALFRRLQENPNFAKQVFDAASGKDQ 151


>gi|205375249|ref|ZP_03228039.1| putative DNA-binding protein [Bacillus coahuilensis m4-4]
          Length = 212

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 64/196 (32%), Gaps = 17/196 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ +  +++   LA K+G+     ++ +  G +      S + +  I      + 
Sbjct: 4   GEYLKQLRKEKSISQRELAEKSGVSNAEISRIETGGRQK----ISPDVLRAIAPILEISY 59

Query: 70  CQLLD---------LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            +L+D            S+ R  E++  EI        G G  +       G+     G 
Sbjct: 60  EELMDKAGYISSNANFMSEHREAEERFIEIVTPKLIMDGWGVEYTRRGPTIGDIVAKKGK 119

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            E    +      +  D   +    +   L+R    L +     ++     +   +  +I
Sbjct: 120 KEWHIDYRYFRIREDNDRHFRYDMRARETLWRTYGRLAVYDKDDISKYTIAVSDEKIYEI 179

Query: 181 VAKVLISRRGRSIDLM 196
           V K       + + L 
Sbjct: 180 VLKY----PPKLLRLK 191


>gi|156974240|ref|YP_001445147.1| hypothetical protein VIBHAR_01955 [Vibrio harveyi ATCC BAA-1116]
 gi|156525834|gb|ABU70920.1| hypothetical protein VIBHAR_01955 [Vibrio harveyi ATCC BAA-1116]
          Length = 88

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 13/38 (34%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             +  +     +T   LA K G+  ++ N  +     
Sbjct: 1  MSNLKAIRGELGVTQQTLAEKVGVSQSAINHYENGNRT 38


>gi|325848843|ref|ZP_08170353.1| nucleotide sugar dehydrogenase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480487|gb|EGC83549.1| nucleotide sugar dehydrogenase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 489

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 17/181 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S KK+ + +    +  N +   L+   G++ T  ++ +          PS + +  
Sbjct: 1   MKKLSVKKLADFVSTYRKSKNFSQRNLSDLTGINRTMISRIESCNYV-----PSIDQLQV 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +       I  L        ++  K   +   +    +G  G   + +    N+   V +
Sbjct: 56  LAEVLGFDIVDLF--VEEGKKSFMKNIDKKYKIAVAGTGYVGLSIATLLAQNNQVTAVDI 113

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD---ILILNSAIQVNCGDRLLIKPRT 177
            + +            D +   QD  +     + D      L+        D ++I   T
Sbjct: 114 VKEKVDLI-------NDRKSPIQDDYIEKYLSEKDLDLTATLDGEAAYRDADFVVIAAPT 166

Query: 178 G 178
            
Sbjct: 167 N 167


>gi|313894180|ref|ZP_07827745.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
 gi|313441004|gb|EFR59431.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
          Length = 90

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I + I       ++T   L+   G+  +  +K +          PS +++ KI  A  
Sbjct: 29 QIIQNIVEARLAAHMTQMQLSELTGITQSDISKIENGNGN-----PSLKTLQKIAHAFG 82


>gi|310659792|ref|YP_003937513.1| hypothetical protein CLOST_2493 [Clostridium sticklandii DSM 519]
 gi|308826570|emb|CBH22608.1| protein of unknown function [Clostridium sticklandii]
          Length = 234

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 10  WEAIDRMAE-RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            + I  + + R+ +T   LA K G+   + +K +   +     +P  + + +I    + +
Sbjct: 4   GQNIQFLRKMRNKMTQEELAEKLGVSRQTVSKWELDVM-----YPEMDKVIEICKLFSCS 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           + +L+    +         +   +  F                
Sbjct: 59  MDELIRNDMNVSDEAYSDIRMEYVEPFRYIRYAVVSTEPEDDA 101


>gi|297153608|gb|ADI03320.1| putative transcriptional regulator, XRE family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 172

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 6/163 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  + E  +L+ S LAR++ +   + ++ +     G  R P+ E+++ +  A N 
Sbjct: 6   RVGLRLRELREAQDLSLSELARRSAIGKGTLSELE-----GGRRNPTLETLYALTTALNV 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +   L         + +    +    F  + +           G    +       + H
Sbjct: 61  PLSTALHGLALPAEISGRAVDAVLTERFEDASAVTETYRIRIRAGTTQESAAHSPGTTEH 120

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
             + A   +         S+ P         +    Q   GD 
Sbjct: 121 IVVLAGTARVGSLSAP-VSIGPGMHGSWAADVPHLYQAPFGDV 162


>gi|298292838|ref|YP_003694777.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929349|gb|ADH90158.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 91

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K +   + R+ +   LT   LA ++G      +  +R       + P+  ++++
Sbjct: 1  MDM--RKLVGRNLARLRQAQKLTQEELAMRSGFSQQYLSDMERG-----LKNPTIITLYE 53

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEI 90
          I  A   +   L++          + ++  
Sbjct: 54 IALALRVSHVALVEPDGMADGAVAQPKRRR 83


>gi|295112170|emb|CBL28920.1| Helix-turn-helix. [Synergistetes bacterium SGP1]
          Length = 138

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 27/105 (25%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + R      LT   L ++ G+ P+  ++ +R    G     + E I  +L   +    
Sbjct: 4   ANLRRRRNHLGLTLKELGKECGMSPSYISELERGVYGGGEALETQERILAVLTDLDMKQR 63

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
                     R  E     +                     G  W
Sbjct: 64  ASTMWHSRPERKFEPGRAYLVEDQPLRYLRKEGKHHLFRGPGGGW 108


>gi|289773956|ref|ZP_06533334.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289704155|gb|EFD71584.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 200

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 11/146 (7%)

Query: 1   MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           M   + +       + + I  +      +   LA +A L  +S ++ +        R  +
Sbjct: 1   MLLMTQEDGDLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENG-----RRRLA 55

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            + +  +  A + T+ QL++    D  T+   +    L+ +P  G  G        T   
Sbjct: 56  LDQLVTLARALDTTLDQLVETADEDVITSPMIDSAHGLMRWPVKGDPGMTVVRQRMTQPP 115

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140
                          +  +       
Sbjct: 116 PENPARMRAHPGREWLVVLSGTAVLM 141


>gi|284047052|ref|YP_003397392.1| MerR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951273|gb|ADB54017.1| transcriptional regulator, MerR family [Conexibacter woesei DSM
           14684]
          Length = 283

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 36/135 (26%), Gaps = 10/135 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + I R      LT    A + G+  +  +  +R  +       +T+ + ++  A    +
Sbjct: 92  GDTIRRARRDRGLTLREAAARIGVSASFLSSVERGEV-----GVTTQFVARVADAFLMPM 146

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
             +              E+    L       G  ++  V P       +          G
Sbjct: 147 SGMASFRAQGPFVVRSDERASGTL-----VGGVVWEELVLPGHALEPALLTVPPARDSGG 201

Query: 130 IYAIQTQDTRHKTQD 144
            YA   +        
Sbjct: 202 AYARPGETFVFVLAG 216


>gi|239502014|ref|ZP_04661324.1| hypothetical protein AbauAB_06835 [Acinetobacter baumannii AB900]
          Length = 183

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 17/144 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +   H  +   I  + +  +L+   LA +AG+   +    +   +       S   +  I
Sbjct: 6   SVLQH--VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 58

Query: 62  LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            A        ++  P               EK+E +   L   PS S     +     G 
Sbjct: 59  AAVLGVDFRTIVSAPELKEHALVNALAWQGEKEESKATFLASVPSRSQVELWTWSLAVG- 117

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137
             + V   +       IY ++ + 
Sbjct: 118 -ESYVAEADAEGWQELIYVLEGEL 140


>gi|269798806|ref|YP_003312706.1| XRE family transcriptional regulator [Veillonella parvula DSM
          2008]
 gi|269095435|gb|ACZ25426.1| transcriptional regulator, XRE family [Veillonella parvula DSM
          2008]
          Length = 90

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +I + I       ++T   L+   G+  +  +K +          PS +++ KI  A  
Sbjct: 29 QIIQNIVEARLAAHMTQMQLSELTGITQSDISKIENGNGN-----PSLKTLQKIAHAFG 82


>gi|183982165|ref|YP_001850456.1| transcriptional regulator [Mycobacterium marinum M]
 gi|183175491|gb|ACC40601.1| transcriptional regulator [Mycobacterium marinum M]
          Length = 180

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +  +  +  LT   LA++AGL  +  +K +R         PS     K+  A 
Sbjct: 5  LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQST-----PSIAVALKVARAL 52


>gi|170693398|ref|ZP_02884557.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M]
 gi|170141553|gb|EDT09722.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M]
          Length = 229

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 6/150 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 32  VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 86

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L    ++G      E+   ++      S         PT                 
Sbjct: 87  VAAFLRRHATNGFEHLPAERSSRIVSSNGRYSARPLYPDNEPT-AAEFHELRIAPLHTEA 145

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
           G+             + ++         L+
Sbjct: 146 GVRRAPGTTVNLVVSEGTLEVSVHDQRQLL 175


>gi|167571834|ref|ZP_02364708.1| DNA-binding protein [Burkholderia oklahomensis C6786]
          Length = 200

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 22  RVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 76

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++ +L   P +          +IP L    +      +         +W  + +P   + 
Sbjct: 77  SLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGKFEWYELTLPANGAL 136

Query: 127 HNGIYAIQTQDTRHKTQDTSML 148
            +  +            + S+ 
Sbjct: 137 VSNPHE-PGTREHLTVLNGSVE 157


>gi|118617359|ref|YP_905691.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
 gi|118569469|gb|ABL04220.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
          Length = 180

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +  +  +  LT   LA++AGL  +  +K +R         PS     K+  A 
Sbjct: 5  LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQST-----PSIAVALKVARAL 52


>gi|37528124|ref|NP_931469.1| hypothetical protein plu4293 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36787561|emb|CAE16665.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 78

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +    +   ++    A K G+D T  +  +R       R P+ E I  I +     +
Sbjct: 12 GQRVRYFRQSSGMSQEAFADKCGIDRTYISGIERGV-----RNPTLEIINIIASGLQIEL 66

Query: 70 CQLLDL 75
            L D 
Sbjct: 67 TDLFDF 72


>gi|326332010|ref|ZP_08198295.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium
          Broad-1]
 gi|325950148|gb|EGD42203.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium
          Broad-1]
          Length = 147

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E +        ++   LA +AG+     ++ +R       R PS E + +I  A   +
Sbjct: 13 LGEYLKEQRISAEMSLRQLADQAGVSNPYLSQIERG-----LRKPSAEVLQQIAKALRIS 67

Query: 69 ICQLLDLPFSDGRTTE 84
            Q+          + 
Sbjct: 68 AEQVYVRAGILSPDSN 83


>gi|313207290|ref|YP_004046467.1| transcriptional regulator, xre family [Riemerella anatipestifer
          DSM 15868]
 gi|312446606|gb|ADQ82961.1| transcriptional regulator, XRE family [Riemerella anatipestifer
          DSM 15868]
 gi|315023460|gb|EFT36467.1| XRE family transcriptional regulator [Riemerella anatipestifer
          RA-YM]
 gi|325335235|gb|ADZ11509.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD]
          Length = 101

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 18/46 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
          ++   ++    +  +T   LA K G + +  ++ +    + R    
Sbjct: 38 QLGVLLEEARRKLGMTQEELAEKCGTNKSYISRIENNASDIRLSTL 83


>gi|269793710|ref|YP_003313165.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
 gi|269095895|gb|ACZ20331.1| predicted transcriptional regulator [Sanguibacter keddieii DSM
          10542]
          Length = 98

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          K+  A+ R+     +T + LA  AG+        +     G
Sbjct: 30 KLGAAVRRLRSDRGMTQAQLAEAAGVSRQWVVAVESGSKHG 70


>gi|160892204|ref|ZP_02073207.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC
          8492]
 gi|270296185|ref|ZP_06202385.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156858682|gb|EDO52113.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC
          8492]
 gi|270273589|gb|EFA19451.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 161

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++I   +  + ++ N+T   LA   G++  +  K ++          S + + K+ +A 
Sbjct: 16 RERIGNRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYN-----VSIDILSKVTSAL 70

Query: 66 NE 67
            
Sbjct: 71 GF 72


>gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
          H10]
          Length = 112

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I +      LT   L+   GL P+   + +R       + PS E++  I  + + +
Sbjct: 13 LGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGE-----KSPSVETLIDISKSLDTS 67

Query: 69 ICQLLDLPFSDGRTTEKK 86
          I  +L++P    +     
Sbjct: 68 ISYILNVPDYKMKKELSD 85


>gi|221068405|ref|ZP_03544510.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
 gi|220713428|gb|EED68796.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
          Length = 491

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 5/88 (5%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  +     LT   LA+   L P+  N+ ++       R  +   + +I       I Q
Sbjct: 9  RLRSLRAERGLTQVALAQALELSPSYLNQIEQDQ-----RPLTVSVLLRIHRVLGVDIQQ 63

Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
            +   +      +       L      
Sbjct: 64 FSEDEEARLLAQLRDAVAAMPLPEAAVP 91


>gi|329728856|gb|EGG65277.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21193]
          Length = 62

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I  +    NLT   LA +  L     ++ +          PS E+   I+     
Sbjct: 2  NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHA-----SPSMETFLNIIEVLGT 56

Query: 68 TICQLL 73
          T  +  
Sbjct: 57 TPSEFF 62


>gi|307329641|ref|ZP_07608799.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
 gi|306884699|gb|EFN15727.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
          Length = 225

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 9/136 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  R  LT    A + GL P   ++ +        R PS   +  +      T
Sbjct: 31  VAPRLRDLRRRSGLTLEAAAHRVGLSPAHLSRLETG-----RRQPSLPMLLTLARTYGTT 85

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  LL    S+     + ++         +G   ++ +G      +   + VPE      
Sbjct: 86  VSDLLGEETSERDPVVRADRMEAQE----AGGWTYWQAGGSGRAMQALRLHVPERSGAQE 141

Query: 129 GIYAIQTQDTRHKTQD 144
           G+  +   +       
Sbjct: 142 GLVRVHPGEEWLYVLG 157


>gi|300690045|ref|YP_003751040.1| transcription regulator protein (modular protein) [Ralstonia
           solanacearum PSI07]
 gi|299077105|emb|CBJ49726.1| putative transcription regulator protein (modular protein)
           [Ralstonia solanacearum PSI07]
          Length = 209

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 5/97 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA + G+  +  +  +R         P+   + K+ A  
Sbjct: 17  NERIARRVRELRAARGYTLDVLATRCGVSRSMISLIERGAA-----SPTAAVLDKLAAGL 71

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
             ++  L               +     +  P     
Sbjct: 72  GVSLASLFGGEREGVPAQPLMRRAQQAQWRDPESGYV 108


>gi|296141333|ref|YP_003648576.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296029467|gb|ADG80237.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 128

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S + + E I        ++   LA KAG+     ++ +R       R PS + + +I  A
Sbjct: 12 SGEGLGEFIRAQRIAAEVSIRQLAEKAGVSNPYLSQIERG-----LRRPSADVLGQIAKA 66

Query: 65 TNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
             +   L           E   ++  +    
Sbjct: 67 LRLSAEVLYVQAGILEERPESPVRDALIADTA 98


>gi|262201398|ref|YP_003272606.1| XRE family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262084745|gb|ACY20713.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 147

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 9/132 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT     K+   +       NL+ + +AR+AG+D  +  + ++  I      P  ES+  
Sbjct: 1   MTPDQTVKLINLLTTKRNEQNLSVNEVARRAGVDTGTVWRIEQGMIAK----PRVESLIA 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I         +L                      +         ++  +      +++  
Sbjct: 57  IAKVLGIKPMELFTTVGWLTADDLPDIDTYLHTKYADLPKPVVENAQRY-----IDSLRT 111

Query: 121 PEIRSPHNGIYA 132
           P  +      +A
Sbjct: 112 PPAQHSRGCHHA 123


>gi|225175746|ref|ZP_03729739.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168670|gb|EEG77471.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 406

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
             HK I   + R+ E   L+ S +A  AG+   ++ + +      +
Sbjct: 24 KMDHKMISINLRRVREEKGLSQSEVAHLAGISRVAYGRIESGASIPK 70


>gi|186972781|pdb|2R1J|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In
          Complex With The Synthetic Operator 9t
 gi|186972782|pdb|2R1J|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In
          Complex With The Synthetic Operator 9t
          Length = 68

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E I    ++  +  + L +  G+   + ++ +R   E     P+ E++  +  A   + 
Sbjct: 7  GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-----PNGENLLALSKALQCSP 61

Query: 70 CQ 71
            
Sbjct: 62 DY 63


>gi|168183950|ref|ZP_02618614.1| transcriptional regulator [Clostridium botulinum Bf]
 gi|182672974|gb|EDT84935.1| transcriptional regulator [Clostridium botulinum Bf]
          Length = 92

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +  + E   LT   L +   +   + +  ++   E     P+ +++ KI    N +
Sbjct: 3  GDRLRELREEKQLTQEELGKLLNVSRQAVSSYEKGENE-----PTIDALVKIANIFNVS 56


>gi|197124332|ref|YP_002136283.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174181|gb|ACG75154.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
          Length = 85

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          I ++ E   LT   LAR+ G+  ++ N  +    +   
Sbjct: 5  IKKIRELRGLTQEALARELGVTFSTVNGWENGKHKPMP 42


>gi|154247940|ref|YP_001418898.1| XRE family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gi|154162025|gb|ABS69241.1| putative transcriptional regulator, XRE family [Xanthobacter
          autotrophicus Py2]
          Length = 72

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K +     R+ +   LT   +  ++G      +  +R       R P+  ++++
Sbjct: 1  MDM--RKLVGRNFARLRQEKGLTQEDVEARSGFSQQYISGLERG-----RRNPTVITLYE 53

Query: 61 ILAATNETICQ 71
          +  A   +  +
Sbjct: 54 LAQALGVSHEE 64


>gi|75758644|ref|ZP_00738762.1| Transcriptional regulator [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|228904095|ref|ZP_04068190.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
 gi|228931022|ref|ZP_04093978.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|74493903|gb|EAO57001.1| Transcriptional regulator [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|228828643|gb|EEM74323.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228855180|gb|EEM99744.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
          Length = 91

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   +     +  L+   L++ +G+   + +  +          PS E++ K+      
Sbjct: 28 EIVGVLMAERVKRGLSQRELSKLSGVAQKTISHIESGEDI-----PSIETVVKLAKHLGY 82

Query: 68 T 68
           
Sbjct: 83 E 83


>gi|317403434|gb|EFV83946.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 225

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/102 (8%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + + ++ ++H  + + +A+  G+     ++ +R          S +++ ++      +
Sbjct: 33  LGQQLRQLRKQHGRSLADVAQACGMSLGLLSQIERGLSSA-----SVKTLHQLAREFGVS 87

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           +  LL            +        +      G       P
Sbjct: 88  VNTLLRNAEHTEGEDGGRVARAGTHRYIDLREKGIVKEMYTP 129


>gi|319653368|ref|ZP_08007468.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2]
 gi|317394852|gb|EFV75590.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2]
          Length = 113

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   I  +  +   + + L+ KA +  +  +  +R   E     PS + + +I    
Sbjct: 2  IGGRIKTLRIKKGYSINELSEKAEVSKSYLSYIERGIQE----NPSLQVLSRIAKTL 54


>gi|289432135|ref|YP_003462008.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|288945855|gb|ADC73552.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 133

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ E   L+   +A K G+  +   + +     G+ + P  E + K+  A N  +
Sbjct: 5   GEYLRKLREAQKLSLREMAAKTGVSVSYITQIEN----GKRKAPGPEVLKKLAPAYNVPV 60

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
            +LL          E K           + +    D     
Sbjct: 61  RELLKAAGYMDDVKEFKSILSDEEEVERAFNYVIGDPRYQS 101


>gi|227889182|ref|ZP_04006987.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227850411|gb|EEJ60497.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 161

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E I R+ +  NLT   +A+K  +   +    ++         P  E I  I      ++ 
Sbjct: 5  EQIKRLRKESNLTQEEMAKKLNVTRQAIFNWEKNRNP-----PDFEMIILIAKTFGVSLD 59

Query: 71 QLLDLPFSDGRTTEK 85
          +L+       +  + 
Sbjct: 60 ELILGDKKMNKIEQT 74


>gi|240144293|ref|ZP_04742894.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|257203709|gb|EEV01994.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
          Length = 111

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 7/59 (11%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             +  +  +  L+   LA K  +   +  K +    E     P+ + +  +    + +
Sbjct: 1  MNRLKDLRLKMGLSQQALADKLNVSQQTICKYENNTNE-----PNIDMLEAMADIFDVS 54


>gi|166031013|ref|ZP_02233842.1| hypothetical protein DORFOR_00694 [Dorea formicigenerans ATCC
          27755]
 gi|166029280|gb|EDR48037.1| hypothetical protein DORFOR_00694 [Dorea formicigenerans ATCC
          27755]
          Length = 140

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          TS ++ ++ E +  + ER NL     +R   +   +++  +R       R P  E +  I
Sbjct: 4  TSMANIQLTENLRILRERSNLKQDEFSRYLNISRQTYSNYERGT-----RTPDLELLKSI 58

Query: 62 LAATNETICQ 71
              + TI +
Sbjct: 59 ADFYHITIDE 68


>gi|154504675|ref|ZP_02041413.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC
          29149]
 gi|153795157|gb|EDN77577.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC
          29149]
          Length = 130

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          E I  + +   +T   LA K GL   +    +       +R  S 
Sbjct: 3  ERIKELRKTIGITQQELADKLGLKRNTIATYEIGKAIPSDRVISD 47


>gi|85706378|ref|ZP_01037472.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          217]
 gi|85669151|gb|EAQ24018.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          217]
          Length = 468

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + ++      T + +AR   + P+  N  +        R  S + +  +  A    
Sbjct: 6  IGPRLRQLRRDRGQTQADMARMLNVSPSYINLLENNQ-----RSLSVQMLMSLADAYAVD 60

Query: 69 ICQ 71
             
Sbjct: 61 WRD 63


>gi|119775849|ref|YP_928589.1| hypothetical protein Sama_2717 [Shewanella amazonensis SB2B]
 gi|119768349|gb|ABM00920.1| hypothetical protein Sama_2717 [Shewanella amazonensis SB2B]
          Length = 119

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 5  SHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +  +I  + I  +  + +   S LA +AG+   + +K ++    G  R P+   + K+  
Sbjct: 6  TQAQIISSKIKSLRAKLDWNQSRLATEAGISGAALSKIEQ----GDKRVPTIVVLRKLAT 61

Query: 64 ATNETICQ 71
          A    + +
Sbjct: 62 ALKVDVHE 69


>gi|307324283|ref|ZP_07603491.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
 gi|306890014|gb|EFN20992.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
          Length = 404

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 9/104 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKA----GLD-----PTSFNKSKRFGIEGRNRWPSTESIF 59
           I   I R+ E    + + LAR+     G+          ++ +      R   P   S  
Sbjct: 5   IGANIKRLREERGWSQARLAREVCRSTGVSGEPIGRQEVSRWETGKRTPREWLPFLASAL 64

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            + A   +   +    P         +E  +  L        G 
Sbjct: 65  GVTADVLKAPQEPTQPPLPTLADFLPEEDPLTPLQTRRGRQIGM 108


>gi|296161065|ref|ZP_06843876.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295888764|gb|EFG68571.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 108

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++ E +  + +   LT   LA  AGL  +   + +    +     PS E +  +  A  
Sbjct: 4  RLGEKLRELRKERELTLEKLADLAGLSKSYLWELENRESQ----RPSAEKLTALADALG 58


>gi|268592540|ref|ZP_06126761.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291311950|gb|EFE52403.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 186

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + I +A+ R  ++  L+ S L+RKAG+  ++ ++ +          PS E+++ +  A 
Sbjct: 9  ELISKALVRERQKSGLSLSELSRKAGIAKSTLSQLESGSGN-----PSIETLWALCVAL 62


>gi|323342509|ref|ZP_08082741.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463621|gb|EFY08815.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 258

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           ++   LA K  +   S +K +R         PS +++ ++       +  L+    S   
Sbjct: 1   MSQEMLAEKLNISRQSISKWERGES-----LPSIDNLIRLSEILGIPLNDLVKGKESFPI 55

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                +    + +              +  
Sbjct: 56  PFRFGQNTTKIFFVVFVFLTALVCFVTYAI 85


>gi|290580743|ref|YP_003485135.1| hypothetical protein SmuNN2025_1217 [Streptococcus mutans NN2025]
 gi|254997642|dbj|BAH88243.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 79

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + +   +T   LA K  +   + +K +R        +P   SI K+      ++  L
Sbjct: 10 ISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLS-----FPDINSIPKLAEIFEVSVDDL 64

Query: 73 LD 74
          + 
Sbjct: 65 MQ 66


>gi|167758542|ref|ZP_02430669.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC
          35704]
 gi|167663738|gb|EDS07868.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC
          35704]
          Length = 94

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I ++    ++T S LA+K  +  +S N  +          PST  + ++    + +
Sbjct: 3  IADKIKQLRTSRDMTQSDLAKKLNITRSSVNAWEMGLST-----PSTAYLVELSQLFHVS 57


>gi|160933365|ref|ZP_02080753.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753]
 gi|156867242|gb|EDO60614.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753]
          Length = 194

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + E+  LT S LA K  +   + +K +         +P    +  +  A   +I
Sbjct: 7  GSTIKSLREKQRLTQSQLAEKLCVSDKTISKWETGRG-----FPDISLLKPLACALQVSI 61

Query: 70 CQ 71
           +
Sbjct: 62 PE 63


>gi|126643247|ref|YP_001086231.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978]
 gi|332874254|ref|ZP_08442174.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6014059]
 gi|126389131|gb|ABO13629.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978]
 gi|323519685|gb|ADX94066.1| putative HTH-type transcriptional regulator [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737538|gb|EGJ68445.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
           6014059]
          Length = 183

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 17/144 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +   H  +   I  + +  +L+   LA +AG+   +    +   +       S   +  I
Sbjct: 6   SVLQH--VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVN-----ISLAKLDAI 58

Query: 62  LAATNETICQLLDLPFSDGR--------TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            A        ++  P               EK+E +   L   PS S     +     G 
Sbjct: 59  AAVLGVDFRTIVSAPELKEHALVNALAWQGEKEESKATFLASVPSRSQVELWTWSLAVG- 117

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQD 137
             + V   +       IY ++ + 
Sbjct: 118 -ESYVAEADAEGWQELIYVLEGEL 140


>gi|118477277|ref|YP_894428.1| hypothetical protein BALH_1588 [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045052|ref|ZP_03112285.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|228933140|ref|ZP_04095997.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229184045|ref|ZP_04311258.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1]
 gi|118416502|gb|ABK84921.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024054|gb|EDX62728.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|228599428|gb|EEK57035.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1]
 gi|228826497|gb|EEM72273.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 149

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 5/110 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + ++ E    +   +A+K G+   +  K +          P  +++  +    N T
Sbjct: 3   LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----CPDIDNLILLSEMYNVT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           + +L+    +        E++         G    F   +      +  +
Sbjct: 58  LDELIKGNQNIKEKIHINEEDEDFEKENEFGFYIGFGLLIMSAFIDYEGI 107


>gi|67921508|ref|ZP_00515026.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501]
 gi|67856620|gb|EAM51861.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501]
          Length = 229

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++ E + +  ++  +T +  A+   +  T+    ++       R   +  + K+  A  
Sbjct: 12 NQLGERLQQARKQCGMTQAEAAKIIKVARTTIVAIEKGE-----RRLKSSELIKLARAYG 66

Query: 67 ETICQL 72
            +   
Sbjct: 67 RNVSDF 72


>gi|331006800|ref|ZP_08330064.1| hypothetical protein IMCC1989_737 [gamma proteobacterium
          IMCC1989]
 gi|330419391|gb|EGG93793.1| hypothetical protein IMCC1989_737 [gamma proteobacterium
          IMCC1989]
          Length = 136

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E + R+      T   LA   GL   S ++ +R G +     P   ++ K++     +
Sbjct: 5  ENLRRLRHDKGFTQRELAVACGLRSASISEMERDGGD-----PKMSTVVKLMKGLECS 57


>gi|320526956|ref|ZP_08028145.1| cupin domain protein [Solobacterium moorei F0204]
 gi|320132541|gb|EFW25082.1| cupin domain protein [Solobacterium moorei F0204]
          Length = 180

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 43/159 (27%), Gaps = 13/159 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I ++  +++LT   LA +  L     ++ +R         PS +++  I  A   
Sbjct: 3   DIGHRIKQLRIKNDLTLEELASRTELTKGFLSQLERNLT-----SPSIQTLADIAEALGV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG------VP 121
                      + +     E          +      ++           +         
Sbjct: 58  D-MSRFFAEEHEEKIVFTPEDVFIDEQDGVTTHWIVPNAQKNNMEPIILQLQPGARSKQI 116

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
           E        Y +  +    + +      + R+GD   + 
Sbjct: 117 EPHQGEEFGYVLSGRIYLVR-EGYKKGAVVRRGDTFYIR 154


>gi|299529773|ref|ZP_07043206.1| DNA polymerase V [Comamonas testosteroni S44]
 gi|298722187|gb|EFI63111.1| DNA polymerase V [Comamonas testosteroni S44]
          Length = 136

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 134 QTQDTRHKTQDTSM-LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                  +    SM       GDI++++  ++      ++      ++V +VL S  G +
Sbjct: 43  PKATFLLRVAGPSMQEHGIDDGDIVVVDRELRARDASIVVAVVER-ELVIRVLDSD-GDT 100

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
             L +    YP    +      I  ++
Sbjct: 101 CKLKAGAPTYPDILPQEGQTLEIWGVV 127


>gi|296332860|ref|ZP_06875320.1| helix-turn-helix domain-containing protein [Bacillus subtilis
          subsp. spizizenii ATCC 6633]
 gi|305673206|ref|YP_003864878.1| helix-turn-helix domain-containing protein [Bacillus subtilis
          subsp. spizizenii str. W23]
 gi|296150140|gb|EFG91029.1| helix-turn-helix domain-containing protein [Bacillus subtilis
          subsp. spizizenii ATCC 6633]
 gi|305411450|gb|ADM36569.1| helix-turn-helix domain-containing protein [Bacillus subtilis
          subsp. spizizenii str. W23]
          Length = 261

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKVNTTRQAISKWENGQG-----FPETEKLLMIGNIFEVS 57


>gi|261368381|ref|ZP_05981264.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|282569581|gb|EFB75116.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
          Length = 103

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E + ++ +    +   LA+ +GL+ ++ +   R         P+ E+I K    T  
Sbjct: 2  DVLERLRKLLQERGWSEYRLAQVSGLNESTISNIYRRNT--LPTIPTLEAICKAFGITLS 59

Query: 68 TICQLLDLPFS 78
                D+   
Sbjct: 60 QFFAESDMVEM 70


>gi|256811308|ref|YP_003128677.1| XRE family transcriptional regulator [Methanocaldococcus fervens
           AG86]
 gi|256794508|gb|ACV25177.1| transcriptional regulator, XRE family [Methanocaldococcus fervens
           AG86]
          Length = 165

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
                +   + I    E+  L+   LA+K  +  ++  K +R+ +E   R    
Sbjct: 75  PML-REDYGDVIREAREKRGLSIEDLAKKLKMKASTLQKFERYELEPNEREIKI 127


>gi|251794968|ref|YP_003009699.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542594|gb|ACS99612.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 272

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +K+  +I    +    T   LA K G+   + +K +          P    + ++     
Sbjct: 3  EKLARSIAIYRKERGFTQEELATKLGISFQAVSKWENALT-----MPDLSLLPELCRTLE 57

Query: 67 ET 68
           +
Sbjct: 58 VS 59


>gi|227873975|ref|ZP_03992191.1| transcriptional regulator [Oribacterium sinus F0268]
 gi|227840183|gb|EEJ50597.1| transcriptional regulator [Oribacterium sinus F0268]
          Length = 67

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 13/40 (32%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
           +       +L+   LA   G+   + N  ++       R
Sbjct: 5  RLKSARAGKDLSQQELADLVGVSRQTINAIEKGDYNPTIR 44


>gi|183980077|ref|YP_001848368.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183173403|gb|ACC38513.1| transcriptional regulatory protein [Mycobacterium marinum M]
          Length = 263

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 38/163 (23%), Gaps = 12/163 (7%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S +    AI  + E H+ + + LA   G+     +  +R       R P   ++ K+  
Sbjct: 1   MSRESAGAAIRALRESHDWSLADLAAATGVSIMGLSYLERGA-----RKPHKGTVQKVEN 55

Query: 64  ATNETICQLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                      L  +     E       +  E      P               G     
Sbjct: 56  GLGLPPGTYSRLLVAADPEAELARLLAARPTETASPRRPGVVVVDRHSDTDVLEGYAEAQ 115

Query: 118 VG-VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
           +  +  +        + + +          +           +
Sbjct: 116 LDALRSVIDRLPASTSNEYETYILSVVAQCVKAEMLAASSWRV 158


>gi|167908369|ref|ZP_02495574.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177]
          Length = 202

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++ E I R+      T   L+R AG+  +  ++ +R         P+    +++  A
Sbjct: 21  TPPRVGEQIQRLRNERKFTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 75

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              ++ +L   P +          +IP L    +         +   G  +    +
Sbjct: 76  LGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGK-FEWYEL 130


>gi|153008229|ref|YP_001369444.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560117|gb|ABS13615.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
           49188]
          Length = 110

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I    +   ++   LA  AG+     ++ ++   EG     S +++ KI  A   TI +
Sbjct: 55  IKVWRDYRGMSAKALADAAGISAAYLSQIEKGLREG-----SLDAMKKIAEALKVTIDE 108


>gi|119470975|ref|ZP_01613559.1| component of DNA polymerase V [Alteromonadales bacterium TW-7]
 gi|119445997|gb|EAW27277.1| component of DNA polymerase V [Alteromonadales bacterium TW-7]
          Length = 144

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
             S    +              +SM  +   +GD+L+++ A     GD ++     G  V
Sbjct: 33  GVSLDELLIKHPDATFIGIASGSSMQEVGIFEGDLLVVDRAEHAKDGDVIV-ANLNGLFV 91

Query: 182 AKVLISRRGRSIDLMSLNCCYPVDTVEMSD 211
            K+L         L+S +  Y    +  SD
Sbjct: 92  CKLLDKTNA---RLLSASPLYQPVNITPSD 118


>gi|71903992|ref|YP_280795.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
           MGAS6180]
 gi|94990913|ref|YP_599013.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
           MGAS10270]
 gi|71803087|gb|AAX72440.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes
           MGAS6180]
 gi|94544421|gb|ABF34469.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
           MGAS10270]
          Length = 128

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 5/86 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  +     LT   LA+       +    ++      +R P  +SI K+    N +  
Sbjct: 20  EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKG-----SRNPKHKSIEKLANVFNVSTD 74

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFP 96
            LL             EK    L   
Sbjct: 75  YLLGNTDLKNPNDLDIEKVKESLKKS 100


>gi|87121237|ref|ZP_01077127.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121]
 gi|86163394|gb|EAQ64669.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121]
          Length = 186

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          +   + + +A+ R   +  ++ + +AR+AG+  ++ ++ +          PS E+++ +
Sbjct: 6  TLPIEIVAKALKRERRKLGVSMAEIARQAGIAKSTLSQLESGIGN-----PSLETLWAL 59


>gi|94309910|ref|YP_583120.1| XRE family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353762|gb|ABF07851.1| conserved hypothetical protein with lambda repressor-like
           DNA-binding domains [Cupriavidus metallidurans CH34]
          Length = 131

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 30/113 (26%), Gaps = 8/113 (7%)

Query: 1   MTSFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           M   +   +      +  + ++   +   L+ ++GL  +  +  +R       R  +  +
Sbjct: 1   MHLMTGDPLKLFGRHLTWLRKQRGWSQEALSLESGLARSYLSGIERGT-----RNVALYN 55

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           I  +          +LD          +  +        P+            
Sbjct: 56  ICTLADTLGVAPSVMLDFSSHCADAPVEPARAPFNPEISPAVQATLRYMTELS 108


>gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
 gi|314942330|ref|ZP_07849178.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|314951464|ref|ZP_07854514.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|314993125|ref|ZP_07858511.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|314996008|ref|ZP_07861086.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|313589762|gb|EFR68607.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|313592365|gb|EFR71210.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|313596421|gb|EFR75266.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|313598947|gb|EFR77792.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|313642303|gb|EFS06883.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
          Length = 95

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  +   L+ + LA+K  +     +  +      + 
Sbjct: 29 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 68


>gi|295115097|emb|CBL35944.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SM4/1]
          Length = 107

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S  H+ +   +    E  +LT   LA   G+  +  ++ +      +   PS   +  
Sbjct: 1  MKSPDHE-LGYRLKAARENRHLTQERLAEMVGIAASYLSEIEN-----KRTVPSFNVLSS 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86
          +    N ++  L+    SD   +  +
Sbjct: 55 LCQTLNVSLDDLIFHTESDQIESITR 80


>gi|289522774|ref|ZP_06439628.1| toxin-antitoxin system, antitoxin component, Xre family
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504610|gb|EFD25774.1| toxin-antitoxin system, antitoxin component, Xre family
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 137

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          I R+ ++  LT   LA   G+        +     G     S + + KI  A      +
Sbjct: 31 IKRIRQQRGLTQGELASIVGVSSGYIQALESNRRNG-----SLKILKKIAEALAVDTSE 84


>gi|282851522|ref|ZP_06260887.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus gasseri 224-1]
 gi|282557490|gb|EFB63087.1| toxin-antitoxin system, antitoxin component, Xre family
           [Lactobacillus gasseri 224-1]
          Length = 114

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M++FS++ I      + E +NL+ + +A+K GL    +   +        R P  E++  
Sbjct: 1   MSAFSNRLI-----ALREENNLSKTAVAKKLGLSVQRYANWEYGT-----REPDLENLAA 50

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           I      +   L        + +   EK+  +L +            +   
Sbjct: 51  IAKLYGVSTDYLTGQNDDRDKQSVDLEKDPVVLSYGGRPVSDADMDVIKAI 101


>gi|260428966|ref|ZP_05782943.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260419589|gb|EEX12842.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 205

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + + H L+   L+ +A L   S ++ +R         PS  ++ K+  + +  
Sbjct: 25  LGLRLRALRKSHGLSLKELSARASLSVGSLSQIERDLS-----SPSVRTLNKLATSFDVP 79

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           +      P +D        ++        +  
Sbjct: 80  LSYFFADPAADEVDGIVIRRDTGHEMDVSAQG 111


>gi|237800519|ref|ZP_04588980.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|331023379|gb|EGI03436.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 115

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +   L+ + LA K G D     + +R         P  E + +I    N  
Sbjct: 2  VGAKIKALRKSSTLSQADLAEKIGCDAPLIGRYERGIN-----LPGIEQLIRIATVFNVA 56

Query: 69 ICQ 71
            +
Sbjct: 57 PGE 59


>gi|269837331|ref|YP_003319559.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269786594|gb|ACZ38737.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 146

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + R  E    + S LA  AG D +  ++ +        R P+ E++ K+  A   T  Q 
Sbjct: 16 LKRFREEARTSQSRLAESAGFDHSYVSRLESGN-----RTPTREAVVKLADALGLTPEQR 70


>gi|167838352|ref|ZP_02465211.1| putative DNA-binding protein [Burkholderia thailandensis MSMB43]
          Length = 105

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            AI  +     LT + +A + G   ++ ++ +      +   PS  ++ K  AA  
Sbjct: 42 LRAILAIRHEAGLTQAQVAERMGTTASAVSRLEASLSSEK-HSPSFATLRKYAAACG 97


>gi|167463700|ref|ZP_02328789.1| Transcriptional regulator, Cro/CI family protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 70

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 13 IDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGI 46
          I  +  R+  +T + LA+K G   T+ +  ++   
Sbjct: 4  IAELRARNGKMTQTELAKKIGTSQTTISAWEKDIS 38


>gi|114800333|ref|YP_761750.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114740507|gb|ABI78632.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 75

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 9  IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          I   I  + E H  ++ + LA   G+   +    +          PS ES F+I    + 
Sbjct: 7  ITNRIRELRESHGAMSQAALAEAIGVTRQTVIAIELGKY-----SPSLESAFRIARVFDL 61

Query: 68 TICQLLDLPFSD 79
           I  +       
Sbjct: 62 GIEDVFGWQPPP 73


>gi|33862612|ref|NP_894172.1| putative signal peptidase [Prochlorococcus marinus str. MIT 9313]
 gi|33634528|emb|CAE20514.1| putative signal peptidase [Prochlorococcus marinus str. MIT 9313]
          Length = 118

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 11/110 (10%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKPRT 177
              +  +    +       +    SM P    GD++I         ++  G  ++++   
Sbjct: 3   PTANWRSLFLLLSGLRRHARVDGDSMSPSLAPGDLVIFQPITRYDRRLKAGCVVVVRHPL 62

Query: 178 GDIV--AKVLISRRGRSIDLMSLNCCYPVDT-----VEMSDIEWIARILW 220
                  K LI+     ++L   N     D+     V    +  IA  +W
Sbjct: 63  KPATLLIKRLIAINNSGLELRGDNEQASTDSRHFGLVNRDSLLGIAECVW 112


>gi|332968066|gb|EGK07153.1| XRE family transcriptional regulator [Desmospora sp. 8437]
          Length = 152

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  +     +    LAR+ G+  ++    +R       R PS   + +I      +
Sbjct: 12 LGQRLRTLRLEKKMRQEDLAREIGISKSAIGMYERGE-----REPSLILLREIADFFRVS 66


>gi|332359913|gb|EGJ37727.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1056]
          Length = 120

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  +    NLT + ++R+ G+   +++  ++   +        +   KI    N +  
Sbjct: 4  ERLKALRLEANLTQNDVSRQFGVSQPTYSNWEKGEKKPTP-----DKYPKIAEFYNVSTD 58

Query: 71 QLLDLPFSDGRTTEK 85
           LL            
Sbjct: 59 YLLGKSDYKNSDEID 73


>gi|323481376|gb|ADX80815.1| helix-turn-helix family protein [Enterococcus faecalis 62]
          Length = 71

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 4/40 (10%), Positives = 13/40 (32%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  +    + + LA+K  +     +  +      + 
Sbjct: 5  SNLSRYRKEKGFSQTELAKKMNVTQQCISSWQTGRTIPKP 44


>gi|323357298|ref|YP_004223694.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323273669|dbj|BAJ73814.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 91

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAATN 66
          ++ + + R   +  L+   +A  AGL   ++ K ++     G    P  +++  +     
Sbjct: 14 ELGKRLLRARAQRGLSQEHVAHAAGLATFTYRKLEKGESNPGTPANPRLKTLVALAEVLE 73

Query: 67 ETICQLLDLPFSDGRTT 83
           ++ +L+          
Sbjct: 74 MSLEELIPARPGGVAPG 90


>gi|320333052|ref|YP_004169763.1| helix-turn-helix domain-containing protein [Deinococcus
          maricopensis DSM 21211]
 gi|319754341|gb|ADV66098.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM
          21211]
          Length = 188

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 1  MTSF---SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          MT+    +   I   I    E    + + LA +AG+   + +K +R 
Sbjct: 1  MTTIGDDTSALIARRIRVEREARQWSQADLAERAGVAKATISKVERG 47


>gi|281416408|ref|YP_003347432.1| cro-like protein [Streptococcus phage Abc2]
 gi|226823059|gb|ACO83186.1| cro-like protein [Streptococcus phage Abc2]
          Length = 67

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          I  +  RHNLT    A+  G  P + +  ++  +    + 
Sbjct: 10 IKELRARHNLTQEEFAKTVGTTPQTVSAWEKNVLSISPKN 49


>gi|257866249|ref|ZP_05645902.1| DNA binding protein [Enterococcus casseliflavus EC30]
 gi|257873237|ref|ZP_05652890.1| DNA binding protein [Enterococcus casseliflavus EC10]
 gi|257875884|ref|ZP_05655537.1| DNA binding protein [Enterococcus casseliflavus EC20]
 gi|257800207|gb|EEV29235.1| DNA binding protein [Enterococcus casseliflavus EC30]
 gi|257807401|gb|EEV36223.1| DNA binding protein [Enterococcus casseliflavus EC10]
 gi|257810050|gb|EEV38870.1| DNA binding protein [Enterococcus casseliflavus EC20]
          Length = 172

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 14/141 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E +    E   L+ + +A K  +   S +K +         +P  E++  +      +
Sbjct: 3   LAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRG-----YPDIENLILLSDLYQVS 57

Query: 69  ICQ-------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           I +       L +   ++ +    K++++ LL    +         +   G    +   P
Sbjct: 58  IDELLRENEALKERIETNNQEINDKKEKLSLLQRTMAADKDESLLLLLLAGIG--SFLFP 115

Query: 122 EIRSPHNGIYAIQTQDTRHKT 142
                   +     +      
Sbjct: 116 LGLILDGFVLWRNKKANNFYV 136


>gi|256394502|ref|YP_003116066.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256360728|gb|ACU74225.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 65

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            + +   L+   L    G+   + N  ++   +     PS     +I      T+  + 
Sbjct: 6  RALRQGKGLSQQDLGEALGVSRQTVNAIEQSRYD-----PSLPLAIRIARYFGTTVEGMF 60

Query: 74 D 74
           
Sbjct: 61 H 61


>gi|268589692|ref|ZP_06123913.1| MrfJ protein [Providencia rettgeri DSM 1131]
 gi|291315003|gb|EFE55456.1| MrfJ protein [Providencia rettgeri DSM 1131]
          Length = 103

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             H  I   I    +   L+ + LA K  L     ++ +    +          +  I 
Sbjct: 1  MDIHTIIGIKIKNRRKELGLSGANLADKLNLSQQQISRYENGINK-----IPINHLVDIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKE 87
           A N  I        S+ ++ + + 
Sbjct: 56 EALNCPIEWFFQGYVSNSKSNKNEP 80


>gi|239623531|ref|ZP_04666562.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239521562|gb|EEQ61428.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 115

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          K +   I +  E   L+ + LA K G+D  +    + F    +
Sbjct: 6  KTLGTVIRKAREEQGLSQASLAEKLGIDVRTIINIENFRGNPK 48


>gi|187778278|ref|ZP_02994751.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC
          15579]
 gi|187771903|gb|EDU35705.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC
          15579]
          Length = 180

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I ++ +  N+T   L +  G+  +     +        R PS E + KI      +
Sbjct: 36 LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNA-----RKPSYEVLIKIADFFCVS 90


>gi|229541963|ref|ZP_04431023.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
 gi|229326383|gb|EEN92058.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
          Length = 71

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +   +T   LA++  +   +    +          PS E   KI     + 
Sbjct: 2  VKNNIKLLRKEIGITQEQLAKELKITRQTVITIENHRYN-----PSLELALKIAKFFGKN 56

Query: 69 ICQLLDLPF 77
          + ++  L  
Sbjct: 57 VEEIFFLEE 65


>gi|28563899|ref|NP_788220.1| hypothetical protein OB3501 [Oceanobacillus iheyensis HTE831]
          Length = 76

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K+I   I    +    T    A++  L  +     +R   +     PS + + +I    +
Sbjct: 4  KRIGRRIKAFRKLKGYTQIQFAQEMKLSTSKLGNIERGTKQ-----PSDQLLAEIAEKLS 58

Query: 67 ETICQ 71
           +  +
Sbjct: 59 ISKEE 63


>gi|332666712|ref|YP_004449500.1| helix-turn-helix domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335526|gb|AEE52627.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 174

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            + +I   I +  +   LT   LA+K+G      ++ +    +
Sbjct: 109 KNPEIGLMIKQARKDAGLTQEELAQKSGTSKHYISRLENNKAD 151


>gi|310827798|ref|YP_003960155.1| SOS-response transcriptional repressor [Eubacterium limosum
           KIST612]
 gi|308739532|gb|ADO37192.1| SOS-response transcriptional repressor [Eubacterium limosum
           KIST612]
          Length = 189

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 21/154 (13%)

Query: 5   SHKKIWEAIDRMAERHNLTPS--GLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             K+I E I +        PS   +    G   TS   S    +E R+    T    + +
Sbjct: 28  KQKQILEFIKKQTRECGYPPSVREICEAVGFKSTSSVHSHLKTLEQRSYIRRTSLKTRAI 87

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              N+     L+   +D                            +    +  + V +P 
Sbjct: 88  DVINKDDDDGLENFQTDREMVTLPL-----------LGKITAGDPILAAEDIMDQVPLP- 135

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGD 155
                   +    +    + + TSM+      GD
Sbjct: 136 ------LSFVGTGEHFLLRVKGTSMINAGILDGD 163


>gi|325677709|ref|ZP_08157361.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324110677|gb|EGC04841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 369

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 16/40 (40%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I   I ++ +  ++T   LA   G+   + ++ +      
Sbjct: 3  IGATIKQLRQEQDITQEQLADALGITSRAVSQWETDRTAP 42


>gi|126737472|ref|ZP_01753207.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126722057|gb|EBA18760.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 193

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          +   I   +  + +  +LT   LA + GL     ++ +R   +   R  +      I  A
Sbjct: 9  TQPIIGARMRELRKAKHLTLKQLAAETGLSIGYLSQLERQDADPSIRALNV-----IGKA 63

Query: 65 TNETICQLLDLPFSDGRTT 83
              I      P       
Sbjct: 64 LGVGINWFFPGPEDQEGPE 82


>gi|115379785|ref|ZP_01466856.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|310820720|ref|YP_003953078.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115363203|gb|EAU62367.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393792|gb|ADO71251.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 116

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERH--NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M+    K+I + I  +  +     T   LA +A +  +  +  +R       R    E++
Sbjct: 1  MSEL-GKRIGQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGE-----RVAHVETL 54

Query: 59 FKILAATNETICQLLDLPFS 78
            +  A   ++ +L      
Sbjct: 55 AALAGALGVSLGELFAGTEQ 74


>gi|91772552|ref|YP_565244.1| XRE family transcriptional regulator [Methanococcoides burtonii DSM
           6242]
 gi|91711567|gb|ABE51494.1| Helix-turn-helix type 3 containing CBS sensor transcriptional
           regulator, XRE family [Methanococcoides burtonii DSM
           6242]
          Length = 185

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 10/111 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + +      LT S LA++AG+      + +   ++     P   ++ KI  A  E   
Sbjct: 7   ERLRQKRLDLALTQSELAKRAGVSQPLIARIEAGDVD-----PRLSTLRKICTAFEEVEK 61

Query: 71  QLLDLPFSDGR-----TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           + +             ++E   +    L      S         P G+   
Sbjct: 62  KKVLARDIMHTLVIFVSSEDSVESAVHLMEENGFSQVPVIDQGVPVGSISE 112


>gi|1657420|gb|AAC45971.1| DNA cytosine methyltransferase M.SenPI [Salmonella enterica subsp.
           enterica serovar Enteritidis]
          Length = 379

 Score = 43.6 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 5/137 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDP---TSFNKSKRFGIEGRNRWPSTESIFKILA 63
             I   I    ER ++T    A   GL      +  + +R     +      +++     
Sbjct: 3   DNIAATIKGKRERLHMTQKEFADALGLSKYGDRTIRRWERGET--KPTGAELKAVMDFPD 60

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
                  +       D        +         +                 N    P+ 
Sbjct: 61  TPPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHANYGDFPDG 120

Query: 124 RSPHNGIYAIQTQDTRH 140
                    I   +   
Sbjct: 121 DITKIDEKDIPDHEILV 137


>gi|313157775|gb|EFR57186.1| DNA-binding helix-turn-helix protein [Alistipes sp. HGB5]
          Length = 154

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 5/122 (4%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           + +   L PS LA   G++P   +       +     P  + + KIL          L L
Sbjct: 8   LMKNEGLKPSQLAELLGINPAGISHILAGRNK-----PGFDLLQKILRRFPRINPDWLLL 62

Query: 76  PFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQT 135
                   E   +           S G    G+    +       PE         A Q 
Sbjct: 63  DSDKMYRDEPPAQSSAPQPMSQPASPGGDLFGLASGRHPLEEKRQPETTEKATDDPAPQR 122

Query: 136 QD 137
           Q 
Sbjct: 123 QL 124


>gi|313884783|ref|ZP_07818537.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619982|gb|EFR31417.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 188

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + + R+   H+++   LA+   +   S +K ++   E     PS E +  ++   N +  
Sbjct: 4  DNLKRIRLEHDMSQEDLAQVMAVTRQSISKYEKGTAE-----PSFEKLAILVDYFNLSYD 58

Query: 71 Q 71
           
Sbjct: 59 D 59


>gi|312114460|ref|YP_004012056.1| peptidase S24/S26 domain-containing protein [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219589|gb|ADP70957.1| peptidase S24/S26 domain-containing protein [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 162

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 18/124 (14%)

Query: 114 KWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLP-----LYRKGDILILNSAIQVNCG 168
              +  V  +  P  G   +  +      +D SM        +  GD  +++   + +  
Sbjct: 27  AEGSEPVSSLAMPVFGEEGLPGRCVFIDIRDKSMSHPYERVSFEPGDKALIDLDAKPSPS 86

Query: 169 DRLLIKPRTGDIVAKVLISRRGRS------IDLMSLNCCYPVD---TVEMSDI----EWI 215
           D +L            L    GR+      IDL+ LN  +      ++    I      I
Sbjct: 87  DFVLALVPEEQTALFRLYREVGRAEDGSIIIDLVPLNPNFRTIRISSISPGQIIGVCRSI 146

Query: 216 ARIL 219
            R+ 
Sbjct: 147 HRVF 150


>gi|228945460|ref|ZP_04107812.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814213|gb|EEM60482.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 149

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 5/110 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + ++ E    +   +A+K G+   +  K +          P  +++  +    N T
Sbjct: 3   LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----CPDIDNLILLSEMYNVT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           + +L+    +        E+          G    F   +      +  +
Sbjct: 58  LDELIKGNQNIKEKIHIDEENEDFEKENEFGFYIGFGLLIMSAFIDYEGI 107


>gi|229030998|ref|ZP_04187014.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271]
 gi|228730345|gb|EEL81309.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271]
          Length = 374

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/189 (9%), Positives = 56/189 (29%), Gaps = 12/189 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I    +   +T   LA   G+   S +K +         +P    +  + +  N 
Sbjct: 5   QIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +I +L+       +   K         F                   ++   +       
Sbjct: 60  SIDELICFTPQMEQEDIKNLYHRLAEAFSEEPFDEVMIECREIIKKYYSCFPLLLQMGLL 119

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              + + T+D   +           +  + + +   + +    L+ +  +      ++++
Sbjct: 120 FINHHMLTKDMGKRI-------EILEEAMSLFSRVQEESDDVSLVKEAVSFQATCYLILN 172

Query: 188 RRGRSIDLM 196
           +    + L+
Sbjct: 173 KPNEVLQLL 181


>gi|239815201|ref|YP_002944111.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801778|gb|ACS18845.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 195

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 5/115 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  + +   L+ + LA  +G+     +K +R         P+   + ++ A     
Sbjct: 18  IAARLLALRQAKALSLAELAELSGVSKAMISKVERAES-----SPTAVLLGRLAAGLGVP 72

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           + QLL    +  R    + ++                      G +   + +P  
Sbjct: 73  LAQLLTEEKASPRRLRPRAEQEVWRDPEAGYLRRQVAERGASGGVEMVEIELPRS 127


>gi|218281525|ref|ZP_03487954.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989]
 gi|218217314|gb|EEC90852.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989]
          Length = 255

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 5/51 (9%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I  +  +  ++   LA K  +   + ++ +               + K+  
Sbjct: 7  ILELRTQRGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKL--LSKVFD 55


>gi|251799147|ref|YP_003013878.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546773|gb|ACT03792.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 105

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I   + ++ ++++LT   LA  AG+   + +  +        + P   +I KI     
Sbjct: 3  ISANLKKLRDKYDLTQQDLADIAGVTNKAVSAWETG-----LKEPRMGAIEKIANRFG 55


>gi|218528591|ref|YP_002419407.1| XRE family transcriptional regulator [Methylobacterium
          chloromethanicum CM4]
 gi|218520894|gb|ACK81479.1| transcriptional regulator, XRE family [Methylobacterium
          chloromethanicum CM4]
          Length = 198

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K +   I R+    +L+ S L+  A +  +  +K +   I      PS  SI  I +A 
Sbjct: 17 EKALGHQIRRLRRERDLSLSDLSSAADVSQSMISKIEHGAI-----SPSLASINAIASAL 71

Query: 66 NETICQLLDLPFSDGRTTE 84
          N  I  L          + 
Sbjct: 72 NVPITALFAAFEETRDCSH 90


>gi|90577887|ref|ZP_01233698.1| hypothetical protein VAS14_12589 [Vibrio angustum S14]
 gi|90440973|gb|EAS66153.1| hypothetical protein VAS14_12589 [Vibrio angustum S14]
          Length = 155

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 3/119 (2%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++  +   +   L++ +GL   +  + ++    G     S +S+  +       +   
Sbjct: 3   IRKLRLQRGWSQEQLSQLSGLSIRTIQRIEQGQKAGLE---SLKSLAAVFEIQVSDLQME 59

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
             +      T ++K+    +       S       V       N    P+         
Sbjct: 60  PPMNKEISITEDEKQAINYVKGIKGFYSNLTTYVLVISALFVINYFTSPDYWWAIWPAL 118


>gi|322370379|ref|ZP_08044938.1| HTH/CBS domain-containing protein [Haladaptatus paucihalophilus
           DX253]
 gi|320550087|gb|EFW91742.1| HTH/CBS domain-containing protein [Haladaptatus paucihalophilus
           DX253]
          Length = 179

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +        LT S LA +AG+      + +     G +  P   ++ +I+ A  E+   +
Sbjct: 9   LREHRTDLGLTQSELAERAGVSQPLIARIE-----GDDVDPRLSTLRRIVNALEESEGDI 63

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           +       ++         +        
Sbjct: 64  VRAGDLLHKSVVSVAPTDTVSEAVQKMQ 91


>gi|300854654|ref|YP_003779638.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300434769|gb|ADK14536.1| predicted transcription regulator with a HTH motif [Clostridium
          ljungdahlii DSM 13528]
          Length = 231

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + R      LT   L RK  L   +  + +        + PS   + KI   + + +   
Sbjct: 6  LKRYRRDLGLTQRDLGRKLDLSKATIGQLETG-----LKEPSRILLEKIYKISGKNMNWW 60

Query: 73 LDLPFSD 79
          LD     
Sbjct: 61 LDKNEQF 67


>gi|291167009|gb|EFE29055.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC
          35896]
          Length = 181

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+ E I  + +++ ++   LA K  +   + ++ +    +      +   + K+   T +
Sbjct: 2  KLEEKILALRKQYGMSQEELAGKLNVSRQAISRWEMGTAQ--PDVSNILQLSKVFCVTTD 59

Query: 68 TICQLLDLPFSDGRT 82
           +             
Sbjct: 60 YLLNDECEQEIHRSE 74


>gi|307730928|ref|YP_003908152.1| helix-turn-helix domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307585463|gb|ADN58861.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003]
          Length = 229

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 6/150 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 32  VGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSV-----PSIKVLCKVAAALRVS 86

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L    ++G      E+   ++      S         PT                 
Sbjct: 87  VAAFLRRHATNGFEHLPAERSSRIVSSNGRYSARPLYPDNEPT-AAEFHELRIAPLHTEA 145

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
           G+             + ++         L+
Sbjct: 146 GVRRAPGTTVNLVVSEGTLEVSVHDQRQLL 175


>gi|295700669|ref|YP_003608562.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439882|gb|ADG19051.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 215

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     +T   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 37  RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 91

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  L   P S          +IP L    +         +   G  +    +
Sbjct: 92  SLDSLFAPPKSPEAIAVSGPHDIPTLSGHEAKYQLRVWGPIELAGK-FEWYEL 143


>gi|260203616|ref|ZP_05771107.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis K85]
 gi|289573051|ref|ZP_06453278.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289537482|gb|EFD42060.1| transcriptional regulator [Mycobacterium tuberculosis K85]
          Length = 474

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  ++ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 61  ATFFASQDDTRLAAELREVTLDRDLDIAIDPHEVAEMVSAHP 102


>gi|291614894|ref|YP_003525051.1| XRE family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291585006|gb|ADE12664.1| transcriptional regulator, XRE family [Sideroxydans lithotrophicus
           ES-1]
          Length = 374

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 2/93 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            AI        +T   LA + G    +     +   +   R  S   +   L  T + + 
Sbjct: 8   AAIQSALAERGITQKQLASEVGTSSQAVTNWLKG--KDFPRPASLLKLATTLGLTFDQLV 65

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
              D+        +K   +    +   +   G 
Sbjct: 66  LTNDVGRPVIAYRKKANAKTTDAHIAKAEGIGM 98


>gi|242399365|ref|YP_002994789.1| Predicted transcription regulator, containing DNA-binding HTH
          domain [Thermococcus sibiricus MM 739]
 gi|242265758|gb|ACS90440.1| Predicted transcription regulator, containing DNA-binding HTH
          domain [Thermococcus sibiricus MM 739]
          Length = 65

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
            +  + E   LT   LA+  G+   +    ++   +   R
Sbjct: 3  NRLRELRELKGLTQEDLAKTLGVTRQTIIAIEKGKYDPSLR 43


>gi|240140265|ref|YP_002964743.1| hypothetical protein MexAM1_META1p3756 [Methylobacterium
          extorquens AM1]
 gi|240010240|gb|ACS41466.1| Hypothetical protein MexAM1_META1p3756 [Methylobacterium
          extorquens AM1]
          Length = 70

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 6/61 (9%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  ++  +   +         +    A  AG+     +          +R  +   + +
Sbjct: 1  MTDLTYDDVRARLSTAIREAG-SQKAFAAMAGISRPYLSDVLAGRRPAGDRVLAALDLRR 59

Query: 61 I 61
          +
Sbjct: 60 V 60


>gi|254387621|ref|ZP_05002860.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294814993|ref|ZP_06773636.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|326443362|ref|ZP_08218096.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197701347|gb|EDY47159.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294327592|gb|EFG09235.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 276

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 17/49 (34%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           +K  + +  + +    T   LA +AG      +  +        R+ S
Sbjct: 14 REKFGQVMRSLRDERGWTQEELAERAGCSSQHISAVETGRRPPTRRFAS 62


>gi|146300361|ref|YP_001194952.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146154779|gb|ABQ05633.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
           UW101]
          Length = 129

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 7/118 (5%)

Query: 1   MTSFSHKK-IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M++F+    I   I R+ E  ++    LA+  G    + +  +             E + 
Sbjct: 1   MSTFTKPSHIGRKISRIRELRDMKQEALAQALGTSQQTISALENSE------EIDDEKLK 54

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +I  A   ++  L +              +        + +   F+            
Sbjct: 55  QIAKALGVSVEALKNFSDEAAINYFNNFYDNSNGTNFGTNNNCTFNPLDKLIEAYEEN 112


>gi|86739571|ref|YP_479971.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566433|gb|ABD10242.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 497

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 42/163 (25%), Gaps = 9/163 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +    + H LT   LA + G D +  +K +     GR       ++  I      +
Sbjct: 20  VGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVE----SGRRAIHDISTLRHIARNLALS 75

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN-----TVGVPEI 123
              +   P S      +     P      +    +  +      ++ +         PE 
Sbjct: 76  PEDVGLAPGSMTDRRRETAPRSPAAEQAAASQRAWRLTRDHLNHHRISLARAAVRLYPET 135

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
               +G+ A              +   +            +  
Sbjct: 136 DRLGSGLLARPGWVWDTPVDIDDVTLGWHDSAEAPTIRGDEPE 178


>gi|49082594|gb|AAT50697.1| PA2312 [synthetic construct]
          Length = 194

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               +++   + R+  + NL+   LAR +G+      + +          PS + + KI 
Sbjct: 7   DLIGQRVAHNLPRLRGKRNLSLDALARISGVSRAMLAQIESGRSV-----PSIKVLCKIA 61

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                ++   LD     G      ++   L+    + +          
Sbjct: 62  QGLKVSVAAFLDDRAFAGVAVLPAQQSKRLVSADGAFTSRALFPFDVA 109


>gi|116748595|ref|YP_845282.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697659|gb|ABK16847.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans
           MPOB]
          Length = 204

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 20/172 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + ++++LT   LA K GL     ++ +   +      P   ++F++  A   
Sbjct: 17  NIGNKVRELRQKNHLTLQDLAVKTGLSKPFLSQIENNKVV-----PPVATLFRLARALKV 71

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-------VGV 120
            +         D R    ++KE   L   P    G           K +        V  
Sbjct: 72  ALGHFFQESVEDDRIAITRKKERVRLDRRPHQEKGLVHYIYTALETKKSNKSMEPFLVEF 131

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLL 172
           P          + + ++  +  +                +    ++ GD + 
Sbjct: 132 PTQEKEEMVFLSHEGEEFLYVMEGQVEFRTL--------DRVETLDPGDSIY 175


>gi|89895497|ref|YP_518984.1| hypothetical protein DSY2751 [Desulfitobacterium hafniense Y51]
 gi|89334945|dbj|BAE84540.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 110

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I ++ +    +   LA++A L  ++ +   +        +P+ E+I +    T  
Sbjct: 8  DIQERIKQLMDTKGWSEYKLAKEANLPQSTISHLFKRNNA--PTYPTIEAICRAFGITMA 65

Query: 68 TIC 70
             
Sbjct: 66 QFF 68


>gi|125973974|ref|YP_001037884.1| XRE family transcriptional regulator [Clostridium thermocellum
          ATCC 27405]
 gi|256004685|ref|ZP_05429662.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
 gi|281418133|ref|ZP_06249153.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
 gi|125714199|gb|ABN52691.1| transcriptional regulator, XRE family [Clostridium thermocellum
          ATCC 27405]
 gi|255991420|gb|EEU01525.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
 gi|281409535|gb|EFB39793.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
 gi|316941226|gb|ADU75260.1| helix-turn-helix domain protein [Clostridium thermocellum DSM
          1313]
          Length = 104

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 21/45 (46%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          ++ + + +M +    + S +A+K+GL     ++ +  G     R 
Sbjct: 34 EVLKQLVKMRKEMGFSQSDVAKKSGLTQQMVSRIETVGNSPTLRN 78


>gi|324993115|gb|EGC25035.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK405]
 gi|324995581|gb|EGC27493.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK678]
 gi|327461381|gb|EGF07712.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1]
 gi|327489239|gb|EGF21032.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1058]
 gi|332361469|gb|EGJ39273.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1056]
          Length = 94

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  + E+   + + +A   G    + +  +            + S+ ++      +
Sbjct: 2  LGKQLKFIREQRGYSQAQIAESLGTTRQTISNWENDKTI-----LDSASLIRLADFYQIS 56

Query: 69 ICQLL 73
          + +L 
Sbjct: 57 LDELC 61


>gi|313887816|ref|ZP_07821496.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312846159|gb|EFR33540.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 70

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    +   L+   LA+  GL   S    +   I      P+ E+ +KI     + 
Sbjct: 8  IENKIAEYRKELGLSQHKLAKAVGLKRRSIMAYENNTI-----SPTLETAYKICKVLGKD 62

Query: 69 ICQLLDLP 76
          I ++    
Sbjct: 63 IKEVFIFK 70


>gi|307323870|ref|ZP_07603079.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
 gi|306890319|gb|EFN21296.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
          Length = 201

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 38/150 (25%), Gaps = 10/150 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +      T + L+   G+  ++ ++ +        R P+ E +  +  A    
Sbjct: 16  VGPRLRALRRTRGTTLAQLSETTGISLSTLSRLESGQ-----RKPTLELLLPLAKAYGVQ 70

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + +L+  P +       +        F P                       P+      
Sbjct: 71  LDELVGAPATGDPRVHPRPFTRHGQTFVPLTRYLGGLHAYKQI-----MPPRPQGVREEP 125

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
                             +     + D+++
Sbjct: 126 LEQRAHEGYEWLYVLSGRLRLALGEHDLVL 155


>gi|260892046|ref|YP_003238143.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260864187|gb|ACX51293.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 81

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           ++ +   R  LT S +AR  GL   S+   +R         PS  +  +I    N ++ 
Sbjct: 3  SSLRKARLRAGLTQSEVARLVGLTRASYTNIERGHKN-----PSVVTALRIAQVLNRSVE 57

Query: 71 QLLDLPFSDGRTTEKKEKEIP 91
          +L       G+  +++     
Sbjct: 58 ELFSDEPPAGQAAKREANTTM 78


>gi|260427221|ref|ZP_05781200.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260421713|gb|EEX14964.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 184

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+     ++   + ++     LT   LA  +G+   + ++ ++  +      P+ E + K
Sbjct: 1  MSDTLTSRLSRRLAQLRAERGLTLDQLASASGVSRAALSRLEKAEV-----SPTAEVLGK 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
          +  A   T+ +LL +          ++ +   
Sbjct: 56 LCTAYGLTMSRLLAMVEESVTPLVPRDAQAVW 87


>gi|291302787|ref|YP_003514065.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290572007|gb|ADD44972.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 503

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 6/63 (9%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + ++  +T        G  P+  +  +        R P    +  +      +
Sbjct: 35 LGKRIRHLRKQRGMTLDAFGEAIGTAPSQLSMIENG-----KREPKLSMLRALARELGVS 89

Query: 69 ICQ 71
            +
Sbjct: 90 SDE 92


>gi|255280876|ref|ZP_05345431.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
 gi|255268813|gb|EET62018.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
          Length = 359

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 6/46 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          M   +       I    +   LT   +A + G+   + NK ++   
Sbjct: 1  MPMNT------VIRERRKALGLTQEQVAERLGVSAPAVNKWEKGNT 40


>gi|147921221|ref|YP_684967.1| transcription regulator [uncultured methanogenic archaeon RC-I]
 gi|110620363|emb|CAJ35641.1| predicted transcription regulator [uncultured methanogenic
          archaeon RC-I]
          Length = 239

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           E I +  +   ++   LA   G+ P+  +  +     GR + P T  I KI+ 
Sbjct: 27 GETIKKWRKNFGISQIDLASSIGVSPSVISDYE----SGRRKSPGTTIISKIVE 76


>gi|331271170|ref|YP_004385879.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925]
 gi|329127665|gb|AEB77607.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925]
          Length = 121

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ +   L+     +K G+      + +         +PS   + KI    N T   L
Sbjct: 7   IQKLRKAKKLSQKEFGKKLGIHDEIILQWESGTS-----YPSINELIKISDVFNITTDSL 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           L    ++     + +  +       +    F +    
Sbjct: 62  LKDNINEYEDDWETDIIMGCAILGMACGFIFDNDLCL 98


>gi|323701137|ref|ZP_08112812.1| helix-turn-helix domain protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323533739|gb|EGB23603.1| helix-turn-helix domain protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 143

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 48/136 (35%), Gaps = 14/136 (10%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   + ++ E+  L+   + + AG++ +  ++ +R   +     PS +++ ++     
Sbjct: 5   QDIGSYLLQLREQFELSTRDVEKLAGVNSSFLSQIERGVKK-----PSPKTLARLAPVYE 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            +   L+ +            K +             FD   FP       + +    + 
Sbjct: 60  VSYENLMVVAGYLPAPETSGAKSLQ---------EKVFDPNYFPNEIDLKELLLVANINF 110

Query: 127 HNGIYAIQTQDTRHKT 142
           +    A++ ++   + 
Sbjct: 111 NGERMALEDKEKLLRI 126


>gi|320326795|gb|EFW82833.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330882738|gb|EGH16887.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 118

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +    + H      LA+  G +  + ++ +R         P+ + + K+  A   +
Sbjct: 8  IGVRVRAFRKAHGFNQDQLAKLVGCEKMTISRYERGVGT-----PNLDHLVKLCVALKIS 62

Query: 69 ICQLLDLPFSDGRTTEKK 86
            +LL             
Sbjct: 63 PAELLPADGISSSREHLP 80


>gi|322434546|ref|YP_004216758.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162273|gb|ADW67978.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 135

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 5/97 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I     +  ++   + ++ GL     ++ +          PS E++ KI  A + 
Sbjct: 22  NIGTTIRDYRLQRGMSQGDIEKRTGLLRCYLSRVENGHTV-----PSLETLQKIAGALDL 76

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
            + Q           +     E  + +          
Sbjct: 77  QLSQFFAEDQVQKEVSTLNLSEEEIRFLTQVQRYSAH 113


>gi|229186773|ref|ZP_04313930.1| Transcription regulator [Bacillus cereus BGSC 6E1]
 gi|228596708|gb|EEK54371.1| Transcription regulator [Bacillus cereus BGSC 6E1]
          Length = 137

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      KI ++I    +R+NL+   LA K G+   + +K ++         P  E++  
Sbjct: 1  MKM----KISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGT-----PDIENLIL 51

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          +    N ++  L+             EK I +    
Sbjct: 52 LSEEMNISLDNLIKGNNGIKERIMNNEKAIKIHLLV 87


>gi|255531474|ref|YP_003091846.1| helix-turn-helix domain-containing protein [Pedobacter heparinus
          DSM 2366]
 gi|255344458|gb|ACU03784.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366]
          Length = 109

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/89 (7%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I ++ +++  +   +A++  +   +F+K +    +      +   + +I      +
Sbjct: 4  IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITD-----INISRLAQIANLFEVS 58

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
             ++     + ++   +E          
Sbjct: 59 TMDIISKEGENPQSLNFEEINGLKEKLAQ 87


>gi|227486494|ref|ZP_03916810.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
 gi|227235542|gb|EEI85557.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
          Length = 76

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I++  +   L+   L +K G+  TS NK +          PS ++   I  A    + 
Sbjct: 3  NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTI-----PSLKTANDIANALGVCMY 57

Query: 71 QLLD 74
          Q+ D
Sbjct: 58 QIFD 61


>gi|262200762|ref|YP_003271970.1| hypothetical protein Gbro_0761 [Gordonia bronchialis DSM 43247]
 gi|262084109|gb|ACY20077.1| Protein of unknown function DUF2083,transcriptional regulator
          [Gordonia bronchialis DSM 43247]
          Length = 475

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 18/51 (35%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           +   +   + ++     L+   LA+   L P+  N+ +        +  S
Sbjct: 1  MTKTYVGSRLRQLRSERGLSQVALAQTLSLSPSYLNQIEHDARPLTPKVLS 51


>gi|225377603|ref|ZP_03754824.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans
          DSM 16841]
 gi|225210579|gb|EEG92933.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans
          DSM 16841]
          Length = 156

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E I    ++   +   LA +  +   +  K +          P   ++  I      
Sbjct: 13 NLGEKIKECRKQAGFSQEQLAERLNVSRQAITKWETNKGI-----PDIVNLIAISDEFGL 67

Query: 68 TICQ 71
          ++ +
Sbjct: 68 SLDE 71


>gi|212711417|ref|ZP_03319545.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM
           30120]
 gi|212685873|gb|EEB45401.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM
           30120]
          Length = 189

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 63/186 (33%), Gaps = 19/186 (10%)

Query: 1   MTSFS-----HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           M + +      + I +++    ++  ++ S LARKAG+  ++ ++ +          PS 
Sbjct: 1   MFTLTLFTPPIELISKSLACERQKSGMSLSELARKAGIAKSTLSQLEAGSGN-----PSI 55

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           E+++ +  A +    +L++   +        E            +     +      + +
Sbjct: 56  ETLWALCVALDIPFSRLIEEKRAAVTVIRHGEGTPVSAEHANYLAYLLSSAPANSQRDIY 115

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKP 175
             V  P  R   +  +     +        +++              +++N GD +  + 
Sbjct: 116 TVVAQP-GRDRISSPHMQGVTEHIILMSGRALVGPLENP--------VELNVGDYIHYRG 166

Query: 176 RTGDIV 181
               I+
Sbjct: 167 DEPHIM 172


>gi|210622958|ref|ZP_03293463.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275]
 gi|210153924|gb|EEA84930.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275]
          Length = 141

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 2/108 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + +   LT   +A+  G    S  + +        +     S+ K+     + 
Sbjct: 4   LGSRLKALRQEKGLTQKEVAKLIGTTDVSIGRYEMDARV--PKADILNSLAKLYDVEIDY 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           +    +         +KK+ E  L         G      F       
Sbjct: 62  LLTGKEETEQPLNDRDKKDIEKDLKKIMDDFRDGESGPVYFDGIELDE 109


>gi|160935566|ref|ZP_02082941.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC
          BAA-613]
 gi|158441310|gb|EDP19020.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC
          BAA-613]
          Length = 115

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          K +   I +  E   ++ + LA K G+D  +    + F    +
Sbjct: 6  KTLGTVIRKAREEQGMSQASLAEKLGIDVRTIINIENFRGNPK 48


>gi|15896567|ref|NP_349916.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026404|gb|AAK81256.1|AE007829_9 Predicted transcriptional regulator [Clostridium acetobutylicum
          ATCC 824]
 gi|325510728|gb|ADZ22364.1| transcriptional regulator [Clostridium acetobutylicum EA 2018]
          Length = 69

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + ++H L+   LA   G+   +    +R          S    +KI      TI +
Sbjct: 4  RIQELRKQHKLSQEELALAVGVTRQTITSLEREKYTA-----SLVLAYKIAHYFGLTIEE 58

Query: 72 LLDLPF 77
          + D   
Sbjct: 59 IFDFSE 64


>gi|21223466|ref|NP_629245.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|256785428|ref|ZP_05523859.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|5541920|emb|CAB51134.1| hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|14717102|emb|CAC44208.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 190

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/134 (5%), Positives = 33/134 (24%), Gaps = 3/134 (2%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  +     +T + L+   G+  ++ ++ +               + +I     
Sbjct: 10  DAVGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLEL--LLPLARIYDVPL 67

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           + +                +   +  +       G      + P+         P+    
Sbjct: 68  DDLVGAPRTGDPRIHLKPVRRFGMVFVPLSRRPGGTQAFKMIIPSRPAPLE-PTPQTHEG 126

Query: 127 HNGIYAIQTQDTRH 140
              +Y +  +    
Sbjct: 127 SEWLYVLSGRLRLL 140


>gi|326441778|ref|ZP_08216512.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 301

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          ++   +  + E+  +T       AGL   + ++ +R   +G  RW   E + + 
Sbjct: 25 QLGFRLLALREQRGMTAEHAGDLAGLSKATVSRYER--AKGNVRWNHVEMLCRA 76


>gi|304440440|ref|ZP_07400329.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|304371192|gb|EFM24809.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
          Length = 132

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   I  + E++NL+   LA+   +  ++ ++ +        R PS +    I    N 
Sbjct: 10 NLGSNIKYLREKNNLSQKELAKILNISNSTLSQYESNV-----RVPSDDIKILIADYFNV 64

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          ++  LL    +  +  +K + +     FP  
Sbjct: 65 SLDYLLGRSSNPHKNNKKTKVDELEEDFPEG 95


>gi|295107554|emb|CBL05097.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 451

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 6/105 (5%)

Query: 6   HK-KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           H+  I   I R      +T   LA   G+   + +K +          P    + +I A 
Sbjct: 2   HEVNIGATIARERSAAGVTQGALAAHLGVTKAAVSKWELGQS-----LPDVALLPRIAAY 56

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
              T+ +L            +         F       +      
Sbjct: 57  FGITLDELFAFRPQLTEDEVRDVYLELCRLFAEDAGAAYARMDEL 101


>gi|296491936|ref|YP_003662403.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC
           19061]
 gi|289176823|emb|CBJ92992.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC
           19061]
          Length = 291

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           K I + I    ++ N+T  GLA++AG++  + ++ +     G+ R  ST+ + 
Sbjct: 200 KNIGQRIRVRRKKLNVTLQGLAKQAGMNQQTLSRYE----TGKKRITSTDLVI 248


>gi|260495101|ref|ZP_05815230.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
 gi|260197544|gb|EEW95062.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
          Length = 184

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 48/191 (25%), Gaps = 36/191 (18%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + + +      ++   LA K  L  +  ++ ++         PS E++ KI       
Sbjct: 3   IGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTL--- 54

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                D+  +     E  +          S             G          I   +N
Sbjct: 55  -----DVRVAYLLEDEDDDIRNIEYIKKDSIKYIESLDSNIKMG----------ILLSNN 99

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186
               ++           S    Y  G              + + I     ++    K   
Sbjct: 100 REKNMEPIIYEIGIDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148

Query: 187 SRRGRSIDLMS 197
             +G S+   S
Sbjct: 149 LLKGDSLYFKS 159


>gi|238852597|ref|ZP_04643007.1| signal peptidase I [Lactobacillus gasseri 202-4]
 gi|238834743|gb|EEQ26970.1| signal peptidase I [Lactobacillus gasseri 202-4]
          Length = 213

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--KPRTGDIVAKVLI 186
            + +             SM P +   D +I     ++  GD +++      G +  K +I
Sbjct: 28  FFVLNKFVFANLTVSGISMQPTFENNDRVIALQHAKIKQGDIVIVDAPDEPGALYIKRVI 87

Query: 187 SRRGRSID 194
              G ++ 
Sbjct: 88  GLPGDTVV 95


>gi|284032140|ref|YP_003382071.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283811433|gb|ADB33272.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 73

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 8  KIWEAIDRMA-ERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++   I  +  +   LT + LAR+ G+   +    ++         PS E  F+I     
Sbjct: 5  RVTNRIRALRTDHAELTQAELARRLGVTRQTVIAIEQGRY-----SPSLELAFQIAHVFG 59

Query: 67 ETICQLLDLPF 77
            +  +   P 
Sbjct: 60 VPLADVFQYPG 70


>gi|225389221|ref|ZP_03758945.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme
           DSM 15981]
 gi|225044715|gb|EEG54961.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme
           DSM 15981]
          Length = 156

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +  + I  + +  +LT + L    G+   + ++ +          P    +  + A  + 
Sbjct: 5   QTGKFIAELRKEKSLTQAQLGDLLGVTNKTISRWENGNY-----MPDLAVLQSLCAVLDV 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            I +++     D     ++     LL    +   
Sbjct: 60  NINEMISGRRLDEADFRQQADNNLLLSLDQARRM 93


>gi|219669933|ref|YP_002460368.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219540193|gb|ACL21932.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 104

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I ++ +    +   LA++A L  ++ +   +        +P+ E+I +    T  
Sbjct: 2  DIQERIKQLMDTKGWSEYKLAKEANLPQSTISHLFKRNNA--PTYPTIEAICRAFGITMA 59

Query: 68 TIC 70
             
Sbjct: 60 QFF 62


>gi|182684266|ref|YP_001836013.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
 gi|221232045|ref|YP_002511197.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669]
 gi|182629600|gb|ACB90548.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
 gi|220674505|emb|CAR69066.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669]
          Length = 158

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 117 DLSDLIHTNIYLVETFDE 134


>gi|160936303|ref|ZP_02083673.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440772|gb|EDP18503.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC
          BAA-613]
          Length = 199

 Score = 43.6 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I + I  + +R  L  + LA   G    +  K +   IE          I K L  T 
Sbjct: 9  IGQRIKTLRKRKGLNQTQLANLIGKSLRTVQKYETGEIEVSI--DVVNEIAKHLDTTP 64


>gi|330817330|ref|YP_004361035.1| DNA-binding protein [Burkholderia gladioli BSR3]
 gi|327369723|gb|AEA61079.1| DNA-binding protein [Burkholderia gladioli BSR3]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 15/127 (11%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + ++  L+   LA +AGL  +  +K +R         PS     ++  A +  + Q
Sbjct: 5   RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLST-----PSVAVAMQLATALHVEVGQ 59

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L      +   T  +  E   +                     +  +     R       
Sbjct: 60  LFASDEDEKAITVVRAGERIRVGGGSEDG----------ASAGYEVIAAEAGRKRLLPFM 109

Query: 132 AIQTQDT 138
                D 
Sbjct: 110 LQPRHDF 116


>gi|322420304|ref|YP_004199527.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18]
 gi|320126691|gb|ADW14251.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18]
          Length = 181

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI E + R+   ++LT   LA +A L     ++ +          PS  ++  I+     
Sbjct: 2  KIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDAT-----SPSIATLKDIVDVFGI 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90
          ++ +             K  +  
Sbjct: 57 SMQEFFSEETDQDIVFGKDARVQ 79


>gi|291529806|emb|CBK95391.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 122

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             + +     N+T   +A+  G+  +  +K +          PS +S+  +      +I
Sbjct: 8  GARLKKYRNEKNITQERIAKILGVSNSMISKYENNTA-----SPSLDSLCTLSKELCVSI 62

Query: 70 CQLL 73
           +L 
Sbjct: 63 DELC 66


>gi|289661679|ref|ZP_06483260.1| hypothetical protein XcampvN_00915 [Xanthomonas campestris pv.
          vasculorum NCPPB702]
          Length = 116

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I        ++ + LA+K  ++  +    +R         PS + ++ + +    +
Sbjct: 8  LAARIRAARIGVGMSQTELAQKLDVNRATVGHWERKNRFA----PSIDHLYAMSSVLRVS 63

Query: 69 ICQLLDLPFSDGRTTEKKEK 88
             L               +
Sbjct: 64 PNWLFHGEDRPKLPEVGGVR 83


>gi|317131465|ref|YP_004090779.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
 gi|315469444|gb|ADU26048.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
          Length = 470

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 63/193 (32%), Gaps = 18/193 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILA---- 63
           + E +D + ++  LT + LA +AG+   + + + R       +  +  +++ K +     
Sbjct: 141 VSEKLDALMKKQKLTRAALAMQAGVAAITISSAARGKHISSEKAAAICKALGKPVDAVFT 200

Query: 64  ----ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                T  +   +L           K ++E  + +   +       +         +   
Sbjct: 201 IHMSDTGLSDKTILHHHRLISAILAKAKRERLVPFNVAAEHATAPKAAHKEAKYLDDEQA 260

Query: 120 V---------PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                     P+IR     I  + +   R +    S   +  +  ++ +  A Q   G  
Sbjct: 261 HTLLTLLLNEPDIRVKAALILLLFSGARRGELCGLSWPDIDFERHLINIERASQYQSGKG 320

Query: 171 LLIKPRTGDIVAK 183
           ++ K    +   +
Sbjct: 321 VVEKSTKNESSIR 333


>gi|289434553|ref|YP_003464425.1| Signal peptidase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170797|emb|CBH27339.1| sipY [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 189

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSIDL 195
            K + TSM+P Y+ GD + +      +  D ++        TG+   K +I   G  I+ 
Sbjct: 43  VKVEGTSMVPTYQDGDRIFIEKITDPDRFDIIVFDEPPMIGTGEHFIKRVIGMPGDKIEF 102

Query: 196 M 196
            
Sbjct: 103 K 103


>gi|282876647|ref|ZP_06285506.1| signal peptidase I [Staphylococcus epidermidis SK135]
 gi|281294582|gb|EFA87117.1| signal peptidase I [Staphylococcus epidermidis SK135]
          Length = 188

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQ----VNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                SM P +   D ++++   +    +  GD ++    + +   K LI + G  I+  
Sbjct: 31  TVSGLSMYPTFNNKDKVVVSKISKSLNHLKSGDVIVFHQNSNNDFIKRLIGKPGDQIEYK 90

Query: 197 SL----NCCY 202
           +     N  Y
Sbjct: 91  NDKLYINKNY 100


>gi|322417892|ref|YP_004197115.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320124279|gb|ADW11839.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 154

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I R+ +   LT + LA   G+   +F++ +R     R   P    + K++    E
Sbjct: 66  DISSDIRRIRKNLKLTQTELADAFGVGKVAFSRYERGET--RPPAP-LVKLLKLIERHPE 122

Query: 68  TICQLLDLPFSDGRTTEKKEK 88
            + ++ + P     + E   +
Sbjct: 123 LLKEMQEQPLQGRYSREPTPR 143


>gi|228918792|ref|ZP_04082190.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228840864|gb|EEM86108.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 108

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  +T   LA    L  ++    +R       R P   ++ ++    N +
Sbjct: 5  GNIIRDLRKQKGITQKELAHSLQLSESTIGMYERNE-----RQPDYNTLIRLADYFNVS 58


>gi|229100015|ref|ZP_04230935.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29]
 gi|228683443|gb|EEL37401.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29]
          Length = 66

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I         T   LA++ G+   +    ++         PS    FKI     + I 
Sbjct: 4  NRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFKIANEFEKPIT 58

Query: 71 QLLDLPF 77
           + D   
Sbjct: 59 DVFDYQE 65


>gi|257785038|ref|YP_003180255.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
           20469]
 gi|257473545|gb|ACV51664.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
           20469]
          Length = 235

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 54/182 (29%), Gaps = 16/182 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT+ S + +   I R+      T   LA++  + P + +K +         +P    +  
Sbjct: 1   MTT-SSETLGRRIARLRLAKTATQERLAKELNVSPQAVSKWESDIN-----YPDISLLPD 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +      ++ +LL    +  + +   ++    +    +           PT      +  
Sbjct: 55  LARFLGVSVDELLSGASAFAQESVAAQEGTAEVVSVAADEPAEIVEE--PTEQDNQGIAT 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI-QVNCGDRLLIKPRTGD 179
                    ++         K +        +K D   +         G  + +    GD
Sbjct: 113 QSSGFSFGKLFGKS----MVKVEKNDEADGSKKKD---VRLGNGSAKHGLHVYVVSNNGD 165

Query: 180 IV 181
           +V
Sbjct: 166 VV 167


>gi|259908745|ref|YP_002649101.1| Transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|224964367|emb|CAX55876.1| Transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|283478718|emb|CAY74634.1| Uncharacterized HTH-type transcriptional regulator ydcN [Erwinia
           pyrifoliae DSM 12163]
          Length = 189

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/144 (9%), Positives = 36/144 (25%), Gaps = 6/144 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    H  + + +         + +  A+  G+      + +R         P+  +++K
Sbjct: 1   MDRLQH-HLAQTLKAQRATRGWSLTQAAQMTGVSKAMLGQIERAES-----SPTIATLWK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I +  N      +    +D      + +                      TG +   V +
Sbjct: 55  IASGFNLPFSSFIAADIADRGAARSQGQLQGYRQPNHGMQIVPLFPFDAETGFEMLVVEL 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQD 144
                  +  +     +       
Sbjct: 115 VAGALSESSAHEQGVIEHAIVISG 138


>gi|222825162|dbj|BAH22319.1| transcriptional regulator [Wolbachia endosymbiont of Cadra
          cautella]
          Length = 115

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 8/78 (10%), Positives = 23/78 (29%), Gaps = 2/78 (2%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+     ++ + I ++     LT + L ++ G+      + +               + K
Sbjct: 1  MSKEWKVQLGKKIKQLRLDRGLTQTELGKRIGVSYRQIQRYENGSN--YILASRLYDLAK 58

Query: 61 ILAATNETICQLLDLPFS 78
           L+         +     
Sbjct: 59 ALSIDVADFFTGMHTDSH 76


>gi|187933844|ref|YP_001884286.1| adenine-specific DNA methyltransferase [Clostridium botulinum B
          str. Eklund 17B]
 gi|187721997|gb|ACD23218.1| adenine-specific DNA methyltransferase [Clostridium botulinum B
          str. Eklund 17B]
          Length = 194

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          + E + +  +   ++   L R+ GL     +K +          PS E++ KI 
Sbjct: 2  VGEKVAKFRKILGISQRELGRRTGLSGQMISKIENNLTN-----PSLETLGKIA 50


>gi|209544910|ref|YP_002277139.1| XRE family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209532587|gb|ACI52524.1| transcriptional regulator, XRE family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 72

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K +     R+     LT   +  ++G      +  +R       R P+  ++++
Sbjct: 1  MDM--RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERG-----RRNPTVITLYE 53

Query: 61 ILAATNETICQ 71
          +  A   +  +
Sbjct: 54 LAQALGVSHVE 64


>gi|168184062|ref|ZP_02618726.1| phosphoserine phosphatase [Clostridium botulinum Bf]
 gi|237794132|ref|YP_002861684.1| HTH domain-containing protein [Clostridium botulinum Ba4 str. 657]
 gi|182672824|gb|EDT84785.1| phosphoserine phosphatase [Clostridium botulinum Bf]
 gi|229261321|gb|ACQ52354.1| HTH domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 381

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 43/157 (27%), Gaps = 12/157 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I    +   +T   LA   G+   S +K +         +P    + ++    N 
Sbjct: 5   NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLS-----YPDILFLPELATYFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +LL       +   KK        F         +         ++           
Sbjct: 60  SMDELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEVMEQCNKLIKKYYSCFPFLLSIIQL 119

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              Y+          ++ ++     +  IL+     +
Sbjct: 120 LLNYSN-------LIKNDAIKKEIFQQCILLSRRIKE 149


>gi|119512426|ref|ZP_01631508.1| hypothetical protein N9414_13365 [Nodularia spumigena CCY9414]
 gi|119462892|gb|EAW43847.1| hypothetical protein N9414_13365 [Nodularia spumigena CCY9414]
          Length = 68

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 1  MTSFSHKKIWEA-IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          M      +I    + R       +   LA   GL  T  ++ +R       R  S
Sbjct: 5  MQPSKLDQILGLELQRHRTEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLS 59


>gi|19553021|ref|NP_601023.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62390698|ref|YP_226100.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21324589|dbj|BAB99213.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
 gi|41326036|emb|CAF20199.1| putative transcriptional regulator [Corynebacterium glutamicum
          ATCC 13032]
          Length = 127

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 3/55 (5%), Positives = 24/55 (43%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          S ++  +++  + ++  ++   +A + G+  ++ ++ + +            ++ 
Sbjct: 26 SQREFLDSLVALRKKAGISQDEVANRMGVSQSAISQFEHYDANPTLSTIRRYALA 80


>gi|332663828|ref|YP_004446616.1| peptidase S24/S26A/S26B [Haliscomenobacter hydrossis DSM 1100]
 gi|332332642|gb|AEE49743.1| Peptidase S24/S26A/S26B, conserved region [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 245

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN--SAIQVNCGDRLLIKPRTGD 179
           E     N              +  SM P+   GD++I     ++     +++      G 
Sbjct: 133 EDIDYFNIPGLAGGGLVAFPIKGNSMEPIIANGDVVICREIQSMSEVRDNKIYSVKHNGS 192

Query: 180 IVAKVLISRRGR-----SIDLMSLNC-CYPVDTVEMSDIEWIARIL 219
           I  K +     R      + L+S N   +     ++++   + +++
Sbjct: 193 IWVKHVQKITDRNGRVTRLKLISANHLEHDPFVEDVNEHTRLYQVI 238


>gi|326388802|ref|ZP_08210386.1| conserved domain protein [Novosphingobium nitrogenifigens DSM
          19370]
 gi|326206712|gb|EGD57545.1| conserved domain protein [Novosphingobium nitrogenifigens DSM
          19370]
          Length = 395

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 6/49 (12%), Positives = 18/49 (36%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          M+  +   +   +    +   ++ + LA   G+   S +K +      +
Sbjct: 1  MSIIAQGFVGARLTEARKARGISATDLADMVGVSVQSISKYENDRQSPK 49


>gi|323463235|gb|ADX75388.1| transcriptional regulator, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 190

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 7/129 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   I    +   L+   LA K  +   + +  +         +P    +  + +  N 
Sbjct: 2   DVGNQIRIYRKERQLSQMALAEKIDVSTQTISNWENERT-----YPDLYHLIVLSSLFNV 56

Query: 68  TICQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
           ++ Q    D+                 L              V    + W  + +P I  
Sbjct: 57  SLDQLVKGDVVEMKNIIDHYNMDRYGKLMLAFMLIAVISVGPVLKFSDGWYGLFIPFIFW 116

Query: 126 PHNGIYAIQ 134
             +  YAI+
Sbjct: 117 AFSMYYAIK 125


>gi|322376311|ref|ZP_08050804.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. M334]
 gi|321282118|gb|EFX59125.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. M334]
          Length = 158

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 117 DLSDLIHTNIYLVETFDE 134


>gi|319947404|ref|ZP_08021636.1| DNA-binding protein [Streptococcus australis ATCC 700641]
 gi|319746344|gb|EFV98605.1| DNA-binding protein [Streptococcus australis ATCC 700641]
          Length = 197

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++ + I    +  NL+   LA    +   S +  +R          +   + K+  
Sbjct: 2  QVGKQIQHYRKEKNLSQDELAEIIFVSRQSISNWERGAT--YPDIQNLLLLSKVFE 55


>gi|317473438|ref|ZP_07932732.1| hypothetical protein HMPREF1011_03082 [Anaerostipes sp.
          3_2_56FAA]
 gi|316899088|gb|EFV21108.1| hypothetical protein HMPREF1011_03082 [Anaerostipes sp.
          3_2_56FAA]
          Length = 356

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          KI E I  +  +   T   LA   G+   + NK ++             ++ ++L 
Sbjct: 2  KINEMIRELRIKKGFTQEQLASLLGVSAPAVNKWEKAAS--YPDITLLPALARVLD 55


>gi|291539786|emb|CBL12897.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 223

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42
          I + I  +  +   T   LA + G+   + +  +
Sbjct: 6  IGKNIKELRMKLGYTQEQLANELGVTRQTLSNWE 39


>gi|326203818|ref|ZP_08193680.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325985916|gb|EGD46750.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 67

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +    NLT   +A+ AG+D T+ NK +  G     R PS ++   I         + 
Sbjct: 5  LKDLRIAKNLTQQKVAKLAGVDVTTINKIELGG-----RRPSPDTAKAIAEVLGFEWTKF 59

Query: 73 LDLPF 77
           D   
Sbjct: 60 YDEEQ 64


>gi|152998873|ref|YP_001364554.1| XRE family transcriptional regulator [Shewanella baltica OS185]
 gi|151363491|gb|ABS06491.1| transcriptional regulator, XRE family [Shewanella baltica OS185]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/164 (7%), Positives = 46/164 (28%), Gaps = 15/164 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  +   +    A++ G+      + +R         P+  +++KI +  N +
Sbjct: 8   LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L+       T  +K  E+                     G +   + +       +
Sbjct: 63  LSTFLEPTPQSQGTVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171
             +     +                   ++++     +  G+ +
Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157


>gi|14520583|ref|NP_126058.1| hypothetical protein PAB2104 [Pyrococcus abyssi GE5]
 gi|24418829|sp|Q9V1R0|Y367_PYRAB RecName: Full=Putative HTH-type transcriptional regulatory protein
           PYRAB03670
 gi|5457799|emb|CAB49289.1| Hypothetical protein, containing helix-turn-helix motif [Pyrococcus
           abyssi GE5]
          Length = 316

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
            + +  + E+H  + S LA   G+   S  + ++   
Sbjct: 128 GKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDS 164


>gi|325689390|gb|EGD31395.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK115]
          Length = 205

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGVEPVVQKEEEQSIKHRRI 82


>gi|325688449|gb|EGD30467.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK72]
          Length = 205

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + I  + +   ++  GLA + G+   + +K +          P  + I  +      
Sbjct: 2  NLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQS-----MPDLDKIISMSDYFEV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          T   LL       +  E++  +   +
Sbjct: 57 TTDYLLKGVEPVVQKEEEQSIKHRRI 82


>gi|295102948|emb|CBL00492.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii
           SL3/3]
          Length = 112

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K + EA+     +  +T   +A   G+   + +K +    +     PST ++F +    
Sbjct: 46  RKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSD-----PSTSNLFALAKLY 100

Query: 66  NETICQ 71
             ++ +
Sbjct: 101 GVSVEE 106


>gi|294084784|ref|YP_003551542.1| transcriptional regulator [Candidatus Puniceispirillum marinum
          IMCC1322]
 gi|292664357|gb|ADE39458.1| transcriptional regulator, putative [Candidatus Puniceispirillum
          marinum IMCC1322]
          Length = 468

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + ++      T + +A K G+ P   N  ++       R  S + +  +    N  
Sbjct: 6  IGPRLRQLRRDSGQTQAQMAEKLGISPAYVNLLEKNQ-----RSLSVQVLMALSDEYNVD 60

Query: 69 ICQ 71
             
Sbjct: 61 WRD 63


>gi|291548990|emb|CBL25252.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 112

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K + EA+     +  +T   +A   G+   + +K +    +     PST ++F +    
Sbjct: 46  RKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSD-----PSTSNLFALAKLY 100

Query: 66  NETICQ 71
             ++ +
Sbjct: 101 GVSVEE 106


>gi|284051431|ref|ZP_06381641.1| XRE family transcriptional regulator [Arthrospira platensis str.
           Paraca]
          Length = 134

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 29/104 (27%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I +  +    +   LA   G+D T  +K +    +   +      + + L    E +  L
Sbjct: 30  IRQARKDRGYSQRELAGLLGVDFTYLSKLENDRADYAPKEEVIRGLARNLGIDEEELIFL 89

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
                       K+        F        F   VF   +  +
Sbjct: 90  AGRIPHHYENFLKENNREITALFRRLQENPNFAKQVFDAASGKD 133


>gi|256827543|ref|YP_003151502.1| putative transcriptional regulator [Cryptobacterium curtum DSM
           15641]
 gi|256583686|gb|ACU94820.1| predicted transcriptional regulator [Cryptobacterium curtum DSM
           15641]
          Length = 197

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 43/148 (29%), Gaps = 10/148 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + +        L+   +A K  +   + +K +          P T+++  +      
Sbjct: 4   EIAKRLYEYRRAAGLSQEQVAAKIDVSRQAVSKWECAEA-----SPDTDNLIALALLYGI 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS-- 125
           T+ +LL              K   +     + +               +T    E  +  
Sbjct: 59  TVDELLFADPEKAIGEAPVSKAAGVETAADNAAQSEPAED--AAEQGEDTAAQSENAAVQ 116

Query: 126 -PHNGIYAIQTQDTRHKTQDTSMLPLYR 152
              + +Y+ + + T  +    S     R
Sbjct: 117 GEGDTVYSDEEEQTTWQQSGDSENDYVR 144


>gi|294813286|ref|ZP_06771929.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294325885|gb|EFG07528.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 303

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          ++   +  + E+  +T       AGL   + ++ +R   +G  RW   E + + 
Sbjct: 27 QLGFRLLALREQRGMTAEHAGDLAGLSKATVSRYER--AKGNVRWNHVEMLCRA 78


>gi|221065656|ref|ZP_03541761.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1]
 gi|264679787|ref|YP_003279696.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2]
 gi|220710679|gb|EED66047.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1]
 gi|262210302|gb|ACY34400.1| transcriptional regulator, XRE family with [Comamonas testosteroni
           CNB-2]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 42/156 (26%), Gaps = 10/156 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             A+     +  +T   LA+ +G+ P + ++ +R  +    R     +   I       +
Sbjct: 17  GAAVRARRAQLGITLDQLAQASGVSPGALSRVERGLLATSLR-----NAMAIAQGLGCEL 71

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +L+        + +       L +   +             G        P      + 
Sbjct: 72  GELVQSA----PSAQITRAGENLRFVDEASGVERLALASPSAGVNLVHYRFPPHAVSSHF 127

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
                             + ++   + ++L++    
Sbjct: 128 AAHRAGTREVFHVL-EGSIEVFTAQEQVLLHAGDTA 162


>gi|300724595|ref|YP_003713920.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061]
 gi|22094605|gb|AAM91936.1|AF525420_7 putative repressor of flagellae [Xenorhabdus nematophila]
 gi|297631137|emb|CBJ91828.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061]
          Length = 91

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I    +   +T + LA K G+     ++ +R   +      S E +  I  A N  
Sbjct: 7  VGKRIQIKRKETGVTAAELADKIGVSHQQLSRYERGTNK-----ISLEHLVAISIALNTP 61

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
              L+  F+  +     +        
Sbjct: 62 ADWFLEDCFTPPKVQMNNQYACVAETI 88


>gi|21218919|ref|NP_624698.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|6066657|emb|CAB58317.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)]
          Length = 200

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 11/146 (7%)

Query: 1   MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           M   + +       + + I  +      +   LA +A L  +S ++ +        R  +
Sbjct: 1   MLLMTQEDGDLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENG-----RRRLA 55

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            + +  +  A + T+ QL++    D  T+   +    L+ +P  G  G        T   
Sbjct: 56  LDQLVTLARALDTTLDQLVETADEDVITSPMIDSAHGLMRWPVKGDPGMTVVRQRMTQPP 115

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140
                          +  +       
Sbjct: 116 PENPARMRAHPGREWLVVLSGTAVLM 141


>gi|13476145|ref|NP_107715.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14026905|dbj|BAB53501.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 227

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WPSTESI 58
          ++   +  +     L+ + LA KAG+   + ++ +R     R +  WP   ++
Sbjct: 43 RVGRRVRALRLERRLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAAAL 95


>gi|323934035|gb|EGB30492.1| helix-turn-helix protein [Escherichia coli E1520]
          Length = 154

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +  E +  +     L+    A + G   +  ++ +R G        S ++I  
Sbjct: 1  MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55

Query: 61 ILAATNETICQ 71
          +  A +    Q
Sbjct: 56 LANALSVEPWQ 66


>gi|320528225|ref|ZP_08029389.1| toxin-antitoxin system, antitoxin component, Xre family
          [Solobacterium moorei F0204]
 gi|320131398|gb|EFW23964.1| toxin-antitoxin system, antitoxin component, Xre family
          [Solobacterium moorei F0204]
          Length = 86

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   I  + + H L+   LA   G    +    +           S    +KI    + 
Sbjct: 17 KVKNRIKELRKEHKLSQGELADLVGTTRQTITSIEVGKYTA-----SLPLAYKIAKQFSL 71

Query: 68 TICQLLDLPF 77
          +I ++ D   
Sbjct: 72 SIEEVFDFSE 81


>gi|304411730|ref|ZP_07393342.1| helix-turn-helix domain protein [Shewanella baltica OS183]
 gi|307306218|ref|ZP_07585963.1| helix-turn-helix domain protein [Shewanella baltica BA175]
 gi|304349918|gb|EFM14324.1| helix-turn-helix domain protein [Shewanella baltica OS183]
 gi|306911091|gb|EFN41518.1| helix-turn-helix domain protein [Shewanella baltica BA175]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 15/164 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  +   +    A++ G+      + +R         P+  +++KI +  N +
Sbjct: 8   LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L+          +K  E+                     G +   + +       +
Sbjct: 63  LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171
             +     +                   ++++     +  G+ +
Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157


>gi|325674671|ref|ZP_08154358.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
 gi|325554257|gb|EGD23932.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
          Length = 85

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          I   I     R  +T + LA ++G+  T+  + +     
Sbjct: 14 IGNEIRAARARRGITQNELADQSGISHTTIVRLESGKRT 52


>gi|295135558|ref|YP_003586234.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
 gi|294983573|gb|ADF54038.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
          Length = 140

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          T  SH  I   I R+ E   +    LA + G+   S +  ++             ++ KI
Sbjct: 17 TKTSH--IGRKISRIRELRGMKQEALAAELGISQQSVSNLEKSENVDE------GTLKKI 68

Query: 62 LAATNETICQLLDLPF 77
              N +   +     
Sbjct: 69 SEVLNVSPEAIRHFTE 84


>gi|291531495|emb|CBK97080.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 301

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I    ++ N+T   LA    +   + +K +         +P T+ +  +      T
Sbjct: 3   LGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTA-----FPETDKLITLSDYFGCT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           + +L+     +  T +    +  +  F  +   G
Sbjct: 58  LDELIKGSAEENFTEDAAGYDKEMNSFTRAICLG 91


>gi|253577297|ref|ZP_04854615.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251843301|gb|EES71331.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 117

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + + +   + +LT   LA +  +      + +R       R  S E++ K+     
Sbjct: 4  EALGKRLRQERHKMHLTQEKLAERIEVSDAYIGQIERGE-----RSLSLETLVKLANQLG 58

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
           T+  LL             + +  ++   
Sbjct: 59 VTVDYLLHDSIEISDDHFLDQIQQIVMNRS 88


>gi|269838117|ref|YP_003320345.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269787380|gb|ACZ39523.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 68

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +    ++   T   L R+ G+   + N  +    +     PS    FK+      TI 
Sbjct: 3  NRVREARQKQGWTQDDLGRRVGVSRQTINAIENGRYD-----PSLPLAFKLARVFETTIE 57

Query: 71 QLLDLPF 77
           L     
Sbjct: 58 DLFFPEE 64


>gi|258651865|ref|YP_003201021.1| hypothetical protein Namu_1642 [Nakamurella multipartita DSM 44233]
 gi|258555090|gb|ACV78032.1| hypothetical protein Namu_1642 [Nakamurella multipartita DSM 44233]
          Length = 444

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 21/149 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI---- 58
             + ++  +A      R   + S +AR  G D  +             R P+   +    
Sbjct: 1   MLTQEEDVDA--HALRRRGWSISAIARHLGKDRKTIRAYLNGERTAGVRSPAGPDVFEPF 58

Query: 59  -----FKILAATNETIC----------QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
                 +++   +                   P        +  + +     P  G    
Sbjct: 59  VTYCRERLVEDPHLWATALYDELLQLGYDRSYPRLTHNLRTRGLRPVCHACRPAGGRPAA 118

Query: 104 FDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
                     +W+ + +P+     +G  A
Sbjct: 119 VIDHPPAEETQWDWLELPDPPRSWDGYGA 147


>gi|255102244|ref|ZP_05331221.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
          Length = 141

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +  + + +  T   LA K  +   S  K +          P   S  K+    N  
Sbjct: 2  INENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESI-----PDIGSCIKLAKLYNVK 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90
          +  L++            + + 
Sbjct: 57 LDDLVNHSEEKTGIIVPPKGKF 78


>gi|217971536|ref|YP_002356287.1| XRE family transcriptional regulator [Shewanella baltica OS223]
 gi|217496671|gb|ACK44864.1| transcriptional regulator, XRE family [Shewanella baltica OS223]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 15/164 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  +   +    A++ G+      + +R         P+  +++KI +  N +
Sbjct: 8   LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L+          +K  E+                     G +   + +       +
Sbjct: 63  LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171
             +     +                   ++++     +  G+ +
Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157


>gi|220910730|ref|YP_002486040.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
 gi|219867502|gb|ACL47839.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
          Length = 825

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 10/133 (7%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ- 71
           +  + ER  LT S +A   GL     ++ ++          STE + +   A    I   
Sbjct: 5   LRGVRERAGLTQSQIAAMLGLSQAQVSRYEQD-----PGTISTELLIRWAQALGTDIPTL 59

Query: 72  ----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               L  L   +      K +    L      +  F +     +    + +  P+     
Sbjct: 60  LANALPSLTPLEVGDPYAKLRHDLNLLEQYISAAHFSELDTAKSHLTPDQLPTPDNLRLQ 119

Query: 128 NGIYAIQTQDTRH 140
              Y  +      
Sbjct: 120 IKRYRQKPNLVLV 132


>gi|189349935|ref|YP_001945563.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|189333957|dbj|BAG43027.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
          Length = 205

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 40/159 (25%), Gaps = 22/159 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA + G+  +  +  +R         P+   + K+ A  
Sbjct: 15  NERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAA-----SPTAVVLDKLAAGL 69

Query: 66  NETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
             ++  L             ++ ++          +        +P+  +   V  P   
Sbjct: 70  GISLAGLFGGDDGAPAQPLVRRAQQAEWRDPASGYARRNLSPPGWPSPLQLVEVDFPPGA 129

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
                           +    +          + +    
Sbjct: 130 ----------------RVAYDTGAREIAWHQQIWVVRGR 152


>gi|114569125|ref|YP_755805.1| XRE family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339587|gb|ABI64867.1| transcriptional regulator, XRE family [Maricaulis maris MCS10]
          Length = 164

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +      +   LA  +GL   +  +++R         PS E++  + A+ + +  QL
Sbjct: 3  LKSLRLEKGWSQEQLATISGLSDRTIQRAERGET------PSLETVRALAASFDLSSAQL 56

Query: 73 LDLPFSDGRTTEKKEKEIPLL 93
           DL  +   T +    +   +
Sbjct: 57 RDLIETPEETADMAANDTTPI 77


>gi|160873452|ref|YP_001552768.1| XRE family transcriptional regulator [Shewanella baltica OS195]
 gi|160858974|gb|ABX47508.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
 gi|315265681|gb|ADT92534.1| helix-turn-helix domain protein [Shewanella baltica OS678]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 15/164 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  +   +    A++ G+      + +R         P+  +++KI +  N +
Sbjct: 8   LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L+          +K  E+                     G +   + +       +
Sbjct: 63  LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLS 122

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILN-SAIQVNCGDRL 171
             +     +                   ++++     +  G+ +
Sbjct: 123 EPHEAGVTEHVIVLSG---------TMEVLVDGQWQTLKQGEAV 157


>gi|19908850|gb|AAM03020.1|AF472611_1 regulatory protein C.BcnI [Brevibacillus centrosporus]
          Length = 74

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + E+  LT   LA +AGL  T  +  +R       R  S  +I KI  A +  I
Sbjct: 9  GRKVRIIREQKGLTQEKLAEEAGLHRTYISSLERGE-----RSISLNNIEKIARALDVEI 63

Query: 70 CQLLDLPF 77
           QL     
Sbjct: 64 YQLFIFRE 71


>gi|146296429|ref|YP_001180200.1| XRE family transcriptional regulator [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145410005|gb|ABP67009.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 122

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K+I + +    ++  LT   +A   G++    +  +        R  S  ++ ++     
Sbjct: 8  KRIGQKLQEARKKAGLTQEQVADYLGINKVQLSYYENGV-----REISIGTLQQLADLYG 62

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
           T+    D   S         +   L 
Sbjct: 63 YTLNYFFDDEKSTDPAVSFSFRGEELE 89


>gi|300786099|ref|YP_003766390.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299795613|gb|ADJ45988.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 197

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 7/133 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+  +  +T + L+   G+  ++ ++ +        R PS E +  I  A   
Sbjct: 11  EVGPRLKRVRTQRRVTLADLSAATGISKSTLSRLESGQ-----RKPSLELLLPIAQAHQV 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L+  P           + IP                  P    +  +  PE   P 
Sbjct: 66  PLDELVGAPEVGDPRVRLTARRIPRHNGAAMTVLPLTRQPGAP--QAFKMILEPETGEPD 123

Query: 128 NGIYAIQTQDTRH 140
             ++         
Sbjct: 124 PQVHEGYEWLYVL 136


>gi|255308106|ref|ZP_05352277.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
          Length = 141

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +  + + +  T   LA K  +   S  K +          P   S  K+    N  
Sbjct: 2  INENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESI-----PDIGSCIKLAKLYNVK 56

Query: 69 ICQLLDLPFSDGRTTEKKEKEI 90
          +  L++            + + 
Sbjct: 57 LDDLVNHSEEKTGIIVPPKGKF 78


>gi|212711620|ref|ZP_03319748.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens
          DSM 30120]
 gi|212685722|gb|EEB45250.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens
          DSM 30120]
          Length = 107

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   + K +   I  + +  N++   L++  G+     ++ +    E R    +  SI +
Sbjct: 2  MKKNTSKIVGARIRTLRKDRNMSIQQLSKLLGISQQHQSRHELG--EMRIHVDTLYSISE 59

Query: 61 ILA 63
          IL 
Sbjct: 60 ILE 62


>gi|168186101|ref|ZP_02620736.1| signal peptidase I [Clostridium botulinum C str. Eklund]
 gi|169296109|gb|EDS78242.1| signal peptidase I [Clostridium botulinum C str. Eklund]
          Length = 176

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 138 TRHKTQDTSMLPLYRKGDIL---ILNSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRSI 193
            + +    SM P  + GD +   ++++  +++ GD ++   +   + + K LI   G  I
Sbjct: 30  FQVRVPSMSMYPTIKPGDRIMVSVVHNQKKLHHGDIIVFNSKEKNESMIKRLIGLPGDEI 89

Query: 194 DL 195
           ++
Sbjct: 90  NI 91


>gi|170729064|ref|YP_001763090.1| XRE family transcriptional regulator [Shewanella woodyi ATCC
          51908]
 gi|169814411|gb|ACA88995.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC
          51908]
          Length = 77

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 6/55 (10%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +  +    + T + LA K  +   + N  ++   +     P    + ++    
Sbjct: 3  NRLKVLRAEQDWTQADLAEKLDVSRQTVNAIEKGKYD--PSLPLAFKLARLFDTP 55


>gi|116515960|ref|YP_816408.1| transcriptional regulator, putative [Streptococcus pneumoniae D39]
 gi|148988506|ref|ZP_01819953.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|168491942|ref|ZP_02716085.1| helix-turn-helix domain protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|225858871|ref|YP_002740381.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585]
 gi|289167945|ref|YP_003446214.1| transcriptional regulator [Streptococcus mitis B6]
 gi|116076536|gb|ABJ54256.1| transcriptional regulator, putative [Streptococcus pneumoniae D39]
 gi|147926187|gb|EDK77261.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|183217352|gb|ACC59271.1| antitoxin PezA [Streptococcus pneumoniae]
 gi|183573821|gb|EDT94349.1| helix-turn-helix domain protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|213031122|emb|CAR31459.1| hypothetical protein [Streptococcus pneumoniae]
 gi|225721666|gb|ACO17520.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585]
 gi|288907512|emb|CBJ22349.1| transcriptional regulator [Streptococcus mitis B6]
 gi|319412015|emb|CBY91948.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 158

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 117 DLSDLIHTNIYLVETFDE 134


>gi|146298449|ref|YP_001193040.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146152867|gb|ABQ03721.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 137

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M++   K I   I R+ E  ++    LA   G +  S +  +             E + K
Sbjct: 1  MSTVKPKHIGRNISRIRELRDMKQEALAIAIGTNQQSISIIEGSESVDE------EKLKK 54

Query: 61 ILAATNETICQLLDLPF 77
          I  A   +   + +   
Sbjct: 55 IAEALGVSAETIKNFSE 71


>gi|329894642|ref|ZP_08270447.1| Transcriptional regulator [gamma proteobacterium IMCC3088]
 gi|328922898|gb|EGG30227.1| Transcriptional regulator [gamma proteobacterium IMCC3088]
          Length = 68

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
            I    +   LT   LAR  G+   + N  +    + 
Sbjct: 3  NNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDP 40


>gi|325678585|ref|ZP_08158195.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324109635|gb|EGC03841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 220

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 33/119 (27%), Gaps = 13/119 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ + I ++      +   LA KA +   + +  +         +P   S+  +      
Sbjct: 25  ELCKTIRKLRTEKGWSQEMLAEKAYVSRQTVSNWENEKC-----YPDVHSLLILSDLFGV 79

Query: 68  TICQLLDLPFSDGRTTEKK--------EKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           ++ +L+       + T  +         +   +L                  G     V
Sbjct: 80  SLDELIKGDVETMKKTVNEKDAKTLKTSQWCGVLGLVAMMLTTAIFENCGEVGRVIGAV 138


>gi|313638160|gb|EFS03416.1| signal peptidase I [Listeria seeligeri FSL S4-171]
          Length = 189

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSIDL 195
            K + TSM+P Y+ GD + +      +  D ++        TG+   K +I   G  I+ 
Sbjct: 43  VKVEGTSMVPTYQDGDRIFIEKITDPDRFDIIVFDEPPMIGTGEHFIKRVIGMPGDKIEF 102

Query: 196 M 196
            
Sbjct: 103 K 103


>gi|307324784|ref|ZP_07603990.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889666|gb|EFN20646.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 187

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + R+     LT + LA ++G+   + ++ +R         P+ E++F +  A  
Sbjct: 11 NLQRLRGERGLTLAALAARSGVAKGTISELERGRGN-----PTIETLFALAYALE 60


>gi|307269924|ref|ZP_07551250.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|306513714|gb|EFM82320.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
          Length = 174

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 1  MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58
          M   +H  I+   +  + E  NLT + LA   G  + T+ +K +    +   R    + +
Sbjct: 1  MKD-THGTIFAQRLKNLRETKNLTQTELAEMLGYKNYTTVSKWESG--DSLPRGKELKLL 57

Query: 59 FKILA 63
           +I  
Sbjct: 58 AEIFN 62


>gi|297565618|ref|YP_003684590.1| XRE family transcriptional regulator [Meiothermus silvanus DSM
          9946]
 gi|296850067|gb|ADH63082.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM
          9946]
          Length = 73

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +  + E   ++   LAR A +      + +        + P  +++ ++  A + +
Sbjct: 2  IGERLKALREARQMSQYDLARAAHVSQGLIWQIE-----ANRKNPGLKTLLRLANALSVS 56

Query: 69 ICQ 71
            Q
Sbjct: 57 PDQ 59


>gi|291531478|emb|CBK97063.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 380

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+ E + +   +  LT   LA   G+   + ++ +         +P    +  I++    
Sbjct: 15 KLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGTT-----YPDITLLPTIVSYFEI 69

Query: 68 TICQLLDLPFSDGRTT 83
          T+ +L+ +        
Sbjct: 70 TLDELMGMENWRSEEQ 85


>gi|257080647|ref|ZP_05575008.1| predicted protein [Enterococcus faecalis E1Sol]
 gi|256988677|gb|EEU75979.1| predicted protein [Enterococcus faecalis E1Sol]
          Length = 177

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 1  MTSFSHKKIWE-AIDRMAERHNLTPSGLARKAG-LDPTSFNKSKRFGIEGRNRWPSTESI 58
          M   +H  I+   +  + E  NLT + LA   G  + T+ +K +    +   R    + +
Sbjct: 4  MKD-THGTIFAQRLKNLRETKNLTQTELAEMLGYKNYTTVSKWESG--DSLPRGKELKLL 60

Query: 59 FKILA 63
           +I  
Sbjct: 61 AEIFN 65


>gi|187777853|ref|ZP_02994326.1| hypothetical protein CLOSPO_01445 [Clostridium sporogenes ATCC
          15579]
 gi|187774781|gb|EDU38583.1| hypothetical protein CLOSPO_01445 [Clostridium sporogenes ATCC
          15579]
          Length = 140

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E    +     L+   LA  + +  T  ++ +     G  R PS  ++  +      + 
Sbjct: 4  GEFFKNIRTEKGLSQRQLAELSHISNTEISRIE----SGERRNPSPNTLKSLAPHLGISY 59

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           +L+        + E ++    +      
Sbjct: 60 GELMIKAGYIDESIEHEKYTEHIFRKADG 88


>gi|188583258|ref|YP_001926703.1| XRE family transcriptional regulator [Methylobacterium populi
          BJ001]
 gi|179346756|gb|ACB82168.1| transcriptional regulator, XRE family [Methylobacterium populi
          BJ001]
          Length = 110

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          A+ R+     LT + LA+  G    + +K      + R 
Sbjct: 19 ALGRVRRERGLTQAALAKILGASQATISKLLAGQHKPRP 57


>gi|149917149|ref|ZP_01905649.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149822065|gb|EDM81458.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 128

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +    +  + +   LT   LARKAGL   +  + +     G    PS  ++ ++      
Sbjct: 11 RFGRHVRSLRKTRGLTQEALARKAGLSGDTIRRLE-----GGTFSPSLTTLVRLSRGLEL 65

Query: 68 TICQLLDLPFSDGRTTEKKEK 88
           +  +L          E++  
Sbjct: 66 RLSTILASYEIGMLPVERELA 86


>gi|118444932|ref|YP_878880.1| signal peptidase I [Clostridium novyi NT]
 gi|118135388|gb|ABK62432.1| signal peptidase I [Clostridium novyi NT]
          Length = 176

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 137 DTRHKTQDTSMLPLYRKGDILIL---NSAIQVNCGDRLLIKPR-TGDIVAKVLISRRGRS 192
             + +    SM P  + GD +++   +S   ++ GD ++   +   + + K LI   G  
Sbjct: 29  LFQVRVPSMSMYPTIKPGDRIMVSILHSQKSLHRGDIVVFNSKEENEYMIKRLIGLPGDD 88

Query: 193 IDL 195
           I++
Sbjct: 89  INI 91


>gi|121609979|ref|YP_997786.1| XRE family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121554619|gb|ABM58768.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae
           EF01-2]
          Length = 208

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 18/143 (12%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            + +  AI  +  R  LT + ++ +AG+     +K +             +++ +I    
Sbjct: 21  EESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMA-----GLDTLARIARTL 75

Query: 66  NETI------------CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
              +                    +      +  K     +    G G       F    
Sbjct: 76  GVAMSALFGKYDASAAMAQHVKRGAGMEVVRRGTKSGHSYHLLAYGQGPVKWFEPFLITM 135

Query: 114 KWNTVGVP-EIRSPHNGIYAIQT 135
             ++   P         +Y ++ 
Sbjct: 136 ADDSQRYPSFQHPGTEFLYMLEG 158


>gi|115523415|ref|YP_780326.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisA53]
 gi|115517362|gb|ABJ05346.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisA53]
          Length = 480

 Score = 43.6 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +     R+ ++  L+ + +A   G+ P+  N  +R       R  + + + ++    +  
Sbjct: 11 VGPRFRRLRQQMGLSQTQMAEGLGISPSYINLIERNQ-----RPVTAQILLRLAENYDLD 65

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
          +  L             +    PL
Sbjct: 66 LRDLATADEDRFFAELNEIFSDPL 89


>gi|328958082|ref|YP_004375468.1| putative DNA-binding protein, XRE family [Carnobacterium sp.
          17-4]
 gi|328674406|gb|AEB30452.1| putative DNA-binding protein, XRE family [Carnobacterium sp.
          17-4]
          Length = 63

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I+++ +   LT + LA+   +   + N  +    +   +     S+ KIL 
Sbjct: 5  IEQLRKDKGLTQADLAKACNVTRQTVNAIENNKYDPTLQLAF--SLSKILN 53


>gi|332654519|ref|ZP_08420262.1| toxin-antitoxin system, antitoxin component, Xre family
           [Ruminococcaceae bacterium D16]
 gi|332516483|gb|EGJ46089.1| toxin-antitoxin system, antitoxin component, Xre family
           [Ruminococcaceae bacterium D16]
          Length = 145

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 11/112 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I+E +  + +   L    L R+ GL   +  + +        + P+ ES+ K+    N T
Sbjct: 3   IFERVHELIKEQGLNVKQLERECGLANATIRRWE-------TQTPNIESVRKVAHRLNVT 55

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
               +D   + G            +      +       + P   K     +
Sbjct: 56  ----IDYLVNGGSPNAPAAPSCDGVPLSSMEADLVAMFRLLPEEAKKEIFDL 103


>gi|300940028|ref|ZP_07154650.1| helix-turn-helix protein [Escherichia coli MS 21-1]
 gi|300455126|gb|EFK18619.1| helix-turn-helix protein [Escherichia coli MS 21-1]
          Length = 118

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I E +  + ++  L     A + G+     ++ +          P  E + K+    N
Sbjct: 3  KDIGERVISVRKKAGLNQREFAARLGISNGGISQIENGKA-----MPGGEFLLKMHQEFN 57

Query: 67 ETICQ 71
            +  
Sbjct: 58 VDVNW 62


>gi|299532071|ref|ZP_07045466.1| transcriptional regulator, XRE family with [Comamonas testosteroni
           S44]
 gi|298719986|gb|EFI60948.1| transcriptional regulator, XRE family with [Comamonas testosteroni
           S44]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 42/156 (26%), Gaps = 10/156 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             A+     +  +T   LA+ +G+ P + ++ +R  +    R     +   I       +
Sbjct: 17  GAAVRARRAQLGITLDQLAQASGVSPGALSRVERGLLATSLR-----NAMAIAQGLGCEL 71

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
            +L+        + +       L +   +             G        P      + 
Sbjct: 72  GELVQSA----PSAQITRAGENLRFVDEASGVERLALASPSAGVNLVHYHFPPHAVSSHF 127

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
                             + ++   + ++L++    
Sbjct: 128 AAHRAGTREVFHVL-EGSIEVFTAQEQVLLHAGDTA 162


>gi|260434925|ref|ZP_05788895.1| nickel-type superoxide dismutase maturation protease [Synechococcus
           sp. WH 8109]
 gi|260412799|gb|EEX06095.1| nickel-type superoxide dismutase maturation protease [Synechococcus
           sp. WH 8109]
          Length = 110

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 12/95 (12%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQ---VNCGDRLLIKPRTGD--IVAKVLISRR 189
            +    + +  SM P    GD +++    +    + G  ++          + K L    
Sbjct: 6   GRRLLLRIEGRSMQPTLEPGDRVLVRRLGRKLAPSLGSVVVTWHPQRSKLRLIKRLSRWD 65

Query: 190 GRSIDLMSLNCCYPVDTVEMSDI-------EWIAR 217
              + L+  N     D+ ++  +       E + R
Sbjct: 66  STGLWLLGDNPTESTDSRQLGAVPTNLLIGEVVGR 100


>gi|260463544|ref|ZP_05811743.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|259030635|gb|EEW31912.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
          Length = 482

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I R+     LT + +A   G+ P+  N  +R       R  + + I K+ +      
Sbjct: 9  GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQ-----RPLTVQLILKLASVYKVDP 63

Query: 70 CQ 71
           +
Sbjct: 64 HE 65


>gi|229176555|ref|ZP_04303981.1| Transcription regulator [Bacillus cereus MM3]
 gi|228606911|gb|EEK64307.1| Transcription regulator [Bacillus cereus MM3]
          Length = 118

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 5/55 (9%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           I  + +    +   L  K  +  +  +K +        + PS E   KI    N
Sbjct: 8  RIKELRKERKWSQKELGEKVDVSESFVSKVESG-----KKQPSREVTAKIAEVFN 57


>gi|291457121|ref|ZP_06596511.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213]
 gi|291380956|gb|EFE88474.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213]
          Length = 356

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 6/124 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  +  + NLT   LA   G+   + +K +         +P  + +  I      T+ 
Sbjct: 5   ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNG 129
            L+    S    +        +     + S     S           +         H  
Sbjct: 60  DLVLGDVSRPAASASAAGSSNVDSSAEAASPLAASSKTAGIIAPIAELAQDITGYDEHRR 119

Query: 130 IYAI 133
            +A+
Sbjct: 120 RFAL 123


>gi|170731783|ref|YP_001763730.1| helix-turn-helix domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169815025|gb|ACA89608.1| helix-turn-helix domain protein [Burkholderia cenocepacia MC0-3]
          Length = 356

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 5/118 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +    +R  LT   LA K+G+   +  + +     G+   PS E++  +       +   
Sbjct: 7   LAIARKRRQLTKKELAEKSGITAVTLTRLE----TGKTADPSMETLETLAQVLGYPVDFF 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGVPEIRSPHNG 129
               + +  T     + +  +      +        F           +P    P   
Sbjct: 63  FGQSYEELTTDAASFRSLSTMSAAQRDAALAAGQIAFSLAEWINERFDLPAPDLPDLR 120


>gi|17530573|ref|NP_511231.1| hypothetical protein R46_054 [IncN plasmid R46]
 gi|12002182|gb|AAG43218.1| unknown [IncN plasmid R46]
          Length = 120

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG---IEGRNRW------- 52
            ++ +    + R     ++  S LA   G+D  + ++ +R      +GR          
Sbjct: 1  MLTNDR-GRQVRRARLLRHMKQSHLAELMGVDQATVSRWERGTLALSDGRWSAVLQLLTG 59

Query: 53 PSTESIFKILAATN 66
          PS  S+ +   A+ 
Sbjct: 60 PSDSSVRRCAEASG 73


>gi|88604161|ref|YP_504339.1| XRE family transcriptional regulator [Methanospirillum hungatei
          JF-1]
 gi|88189623|gb|ABD42620.1| transcriptional regulator, XRE family [Methanospirillum hungatei
          JF-1]
          Length = 70

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          +  I     R  +T + LARKAG+   +    ++         PS      I    N +I
Sbjct: 2  YTRIKEFRVRQGITQADLARKAGVRRETIVFLEKGKYN-----PSLRLAHHIACILNTSI 56

Query: 70 CQLLDLPFSDGRTT 83
           +L       G   
Sbjct: 57 EELFFFDDETGPDE 70


>gi|55822658|ref|YP_141099.1| restriction-modification system regulatory protein [Streptococcus
          thermophilus CNRZ1066]
 gi|55738643|gb|AAV62284.1| restriction-modification system regulatory protein, putative
          [Streptococcus thermophilus CNRZ1066]
          Length = 75

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I  + ++  L+    A K G+D T +   +        R  S ++I KI +  + +I
Sbjct: 7  GKRIKELRKQTGLSQEKFALKIGMDRTYYASIESG-----KRNVSLKNIEKIASGFDISI 61

Query: 70 CQ 71
           Q
Sbjct: 62 SQ 63


>gi|28379037|ref|NP_785929.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1]
 gi|28271875|emb|CAD64780.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1]
          Length = 188

 Score = 43.6 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          I  + +   L+ + LA K  +   S +  ++     R 
Sbjct: 4  IKELRQYMGLSQAELAEKLNVTRQSISLYEKGQRVPRI 41


>gi|319653363|ref|ZP_08007463.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394847|gb|EFV75585.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
          Length = 107

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + + ++ +   ++ S LA +AG+  +  +  +R         PS + + KI    N  
Sbjct: 2  IGDRVKKLRQDKKMSLSELADQAGVAKSYLSSLERNLQT----NPSIQFLEKIAGVLNVP 57

Query: 69 ICQLLDLP 76
          +  L+   
Sbjct: 58 VDHLIHEQ 65


>gi|310825707|ref|YP_003958064.1| transcriptional repressor [Eubacterium limosum KIST612]
 gi|308737441|gb|ADO35101.1| transcriptional repressor [Eubacterium limosum KIST612]
          Length = 116

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I + I    E +++  S L++K G+ P++ N+      E   +  +   + K L    
Sbjct: 3  QTIGQRIRLALEINHMRQSDLSKKTGISPSAINQYISGNFE--PKQNNIYLLAKALNVNE 60

Query: 67 ETICQLLDLPFS 78
            +         
Sbjct: 61 AWLMGYDVSIER 72


>gi|296156274|ref|ZP_06839113.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295893780|gb|EFG73559.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 91

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            A+ R+ E    +   LA  AGL+ +   + +R          + + + +     
Sbjct: 9  GAAVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASI--VTVDKLARAFQVP 62


>gi|254885026|ref|ZP_05257736.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642730|ref|ZP_07997374.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A]
 gi|254837819|gb|EET18128.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385665|gb|EFV66600.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A]
          Length = 100

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
           + I+   ++ N+T + LA K G + +  ++ +    E +
Sbjct: 40 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPK 79


>gi|237711046|ref|ZP_04541527.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454890|gb|EEO60611.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 77

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
           + I+   ++ N+T + LA K G + +  ++ +    E +
Sbjct: 17 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPK 56


>gi|229015817|ref|ZP_04172793.1| Transcriptional regulator [Bacillus cereus AH1273]
 gi|229022024|ref|ZP_04178580.1| Transcriptional regulator [Bacillus cereus AH1272]
 gi|228739280|gb|EEL89720.1| Transcriptional regulator [Bacillus cereus AH1272]
 gi|228745476|gb|EEL95502.1| Transcriptional regulator [Bacillus cereus AH1273]
          Length = 217

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 1  MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M    S++++   I ++ +   L+   L     +DP + ++          + P  + + 
Sbjct: 1  MPKENSNERLSTLIKKLLKERALSMRQLGMLTNIDPATISRIMNG-----KQPPKQKHLQ 55

Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
          K           L D  + +     K++ ++ 
Sbjct: 56 KFAECLQVPPQLLFDEMYPNSPHINKEKTDMY 87


>gi|227486486|ref|ZP_03916802.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
 gi|227235534|gb|EEI85549.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
          Length = 77

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I++  +   L+   L +K G+  TS NK +          PS ++   I  A  
Sbjct: 3  NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTI-----PSLKTANDIANALG 53


>gi|170754766|ref|YP_001780468.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169119978|gb|ACA43814.1| HTH domain protein [Clostridium botulinum B1 str. Okra]
          Length = 381

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 48/181 (26%), Gaps = 15/181 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       I + I    +   +T   LA   G+   S +K +         +P    + +
Sbjct: 1   MREL---NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLS-----YPDILLLPE 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    N ++ +LL       +    K        F         +         ++    
Sbjct: 53  LATYFNISVDELLGYSPQLTKEDIGKIYSKLSHEFAVKPFDEVMEQCNKLIKKYYSCFPF 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                     Y+          ++ ++     +  IL+     + +     +    T + 
Sbjct: 113 LLSIIQLLLNYSN-------LIKNDAIKKEIFQQCILLSRRIKEESENISYIKNANTMEA 165

Query: 181 V 181
           +
Sbjct: 166 L 166


>gi|168204638|ref|ZP_02630643.1| cI2009 [Clostridium perfringens E str. JGS1987]
 gi|170663751|gb|EDT16434.1| cI2009 [Clostridium perfringens E str. JGS1987]
          Length = 78

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          + + +   I R   +   +   L++K+G+   + N  +    +     PS  +++K+   
Sbjct: 12 TIQNVGTNIKRRRLKKGWSLKQLSKKSGVGIKTINDIELGINK-----PSKNTLYKLSRT 66

Query: 65 TNET 68
             T
Sbjct: 67 FGIT 70


>gi|153853196|ref|ZP_01994605.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814]
 gi|149753982|gb|EDM63913.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814]
          Length = 66

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    E++ ++ + LA+  G+   +    +          PS     KI    N T
Sbjct: 2  IITNIKEFREQNKMSQTELAQLVGVRRETIGHLENGHYN-----PSLVLAAKIAKVFNVT 56

Query: 69 ICQLLDLPF 77
          I  +  +  
Sbjct: 57 IEDMFIIID 65


>gi|66391801|ref|YP_238525.1| DNA binding protein [Streptococcus phage 2972]
 gi|168229317|ref|YP_001686838.1| orf44 [Streptococcus phage 858]
 gi|56718458|gb|AAW27964.1| DNA binding protein [Streptococcus phage 2972]
 gi|155241712|gb|ABT18032.1| orf44 [Streptococcus phage 858]
          Length = 170

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 32/135 (23%), Gaps = 7/135 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  + ++  LT   LA K G+   +    +        R     +  K+    N +I
Sbjct: 1   MNRLKELRKQKKLTIVELAEKIGVTKLTILNWEHGT-----REIKGSNAKKLAEYFNVSI 55

Query: 70  CQ--LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                 D   +      K            +     +       G   + +  P   +  
Sbjct: 56  PYLLGYDTDNTFSDLITKINHWADERNLKQADPKIQWMRITEEVGEIRDVLLKPTKFTDP 115

Query: 128 NGIYAIQTQDTRHKT 142
                    DT    
Sbjct: 116 QMALKDAIGDTLVTI 130


>gi|319746123|gb|EFV98396.1| prophage Sa05 protein [Streptococcus agalactiae ATCC 13813]
          Length = 164

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 15/41 (36%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
             +  + +   LT  GLA   G+   +    +    + ++
Sbjct: 1  MNRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKS 41


>gi|309778171|ref|ZP_07673106.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914080|gb|EFP59885.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 45

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 4/39 (10%), Positives = 16/39 (41%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          + + R+ +   ++   LA    +   + +K +    + +
Sbjct: 5  DNLYRIRKEKGMSQEELAALCDVSRQAISKWENGVSQTK 43


>gi|304385449|ref|ZP_07367794.1| transcriptional regulator [Pediococcus acidilactici DSM 20284]
 gi|304328656|gb|EFL95877.1| transcriptional regulator [Pediococcus acidilactici DSM 20284]
          Length = 114

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++  I + I ++ +   LT   LA K+ L     ++ +R   +      S ++I  I 
Sbjct: 1  MSANINIGKLIKQVRKESGLTQEELAEKSDLSVNFISRIERTDNQ----NISWKNIEAIA 56

Query: 63 AATNETICQLLDLPFSDGRT 82
           A   +  +LL +  +  + 
Sbjct: 57 EALGLSTIELLQVNENRQQH 76


>gi|300787758|ref|YP_003768049.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299797272|gb|ADJ47647.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 411

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I     R  L+ + LA   G      +K +R   + R R      + + L  T   
Sbjct: 10 IGERIAFYRRRRGLSQAVLADLVGRTEDWLSKIERGERDIR-RLDVLADLARALRVTLGD 68

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93
          +     L     +  +       L+
Sbjct: 69 LLGEPVLMEEQDKHDDVPAIRDALM 93


>gi|291551242|emb|CBL27504.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 255

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 6/51 (11%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I  +  +  ++   LA K  +   + ++ +               + K+L 
Sbjct: 7  ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKL--LSKVLD 55


>gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 111

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 5/97 (5%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I       N+T   L   +G   ++ ++ +    +     PS E++ K+  
Sbjct: 1   MKKNTIGKRIAEARINLNITQEQLEELSGFSVSTISRFETGRTQ-----PSIENLIKLSK 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
             N  I   L        T +    +  +        
Sbjct: 56  VLNVGIDYFLYDLIPHNETIQSPTVKDAVTVLSQMNE 92


>gi|229590656|ref|YP_002872775.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|229362522|emb|CAY49429.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
          Length = 193

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I R      L+ + LA++AG+  ++ ++ +          PS E+++ +  A    + + 
Sbjct: 23  IKRERLAAGLSLTELAKRAGVAKSTLSQLESGIGN-----PSIETLWSLAMAMGLQVTRF 77

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            + P    R     E            +
Sbjct: 78  FEQPQQPLRVIRANEGMTTYAETANYAA 105


>gi|210634365|ref|ZP_03298091.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM
          13279]
 gi|210158844|gb|EEA89815.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM
          13279]
          Length = 169

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          + +  +  +   +   LA   G+   + +K +  G +GR    +   + +I
Sbjct: 46 DRLLDLRRKAGYSQEQLADLLGVSRQAISKWE--GAQGRPEVDNVVKLSQI 94


>gi|206900818|ref|YP_002250397.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum
          H-6-12]
 gi|206739921|gb|ACI18979.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum
          H-6-12]
          Length = 105

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + + I    ++HN+    LA K GL  +  +  +R       + PS +++ +I  A N
Sbjct: 2  NVGKRIRETRKKHNMKLEDLAEKTGLSLSYISLIERG-----LKNPSLKALERIAKAFN 55


>gi|254380659|ref|ZP_04996025.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194339570|gb|EDX20536.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 296

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 9/136 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   I    +   LT   + ++ G D T     +          P+  S+ +I  A   
Sbjct: 21  DLGRRIAARRQELGLTREQVGKRCGADATYVAYLEEHAA-----APAIGSLARIADALGT 75

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T+ +L               ++  L+    +             G     V  PE  +  
Sbjct: 76  TVAELTGATTGYPPGRGTALRDAELITLTDAERRRLLS----SHGVGRVAVLTPEGPAIF 131

Query: 128 NGIYAIQTQDTRHKTQ 143
              Y +   +   +T 
Sbjct: 132 PVNYVVAGDEIAFRTS 147


>gi|187778336|ref|ZP_02994809.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC
          15579]
 gi|187771961|gb|EDU35763.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC
          15579]
          Length = 111

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +  + E   +T   L +   +   +    ++   E     P+ +++ KI    N +
Sbjct: 21 GDRLKELREEKGMTQEQLGKLLNITKQAVYSYEKGDNE-----PTIDALVKIADIFNVS 74


>gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753]
 gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753]
          Length = 169

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  + +   L+   LA K  +   + +K +          P ++ +  I  A    
Sbjct: 4  ENIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSV-----PDSDMLISISEALETP 56


>gi|160893816|ref|ZP_02074599.1| hypothetical protein CLOL250_01370 [Clostridium sp. L2-50]
 gi|156864468|gb|EDO57899.1| hypothetical protein CLOL250_01370 [Clostridium sp. L2-50]
          Length = 97

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  + ++ N+T + LA  +G+  ++ N   +    G  + P  +++ KI      T
Sbjct: 24 IIYRITYLCKQQNITVNKLATLSGITQSTLNNLMQ----GNTKNPKLKTLHKIATGFGMT 79

Query: 69 ICQLLDLPFSD 79
          + Q LD P  +
Sbjct: 80 LSQFLDFPEMN 90


>gi|149203629|ref|ZP_01880598.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          TM1035]
 gi|149142746|gb|EDM30788.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          TM1035]
          Length = 436

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I      + +  S LA++AG+ P+  N  +        R    +++ K+  A    
Sbjct: 7  IGTRIRERRVLNGMRQSDLAQRAGISPSYLNLIEHNH-----RRIGGKTLLKLAEALKVE 61

Query: 69 ICQLLDLPF 77
            QL     
Sbjct: 62 PSQLTQGAE 70


>gi|310825751|ref|YP_003958108.1| transcriptional regulator [Eubacterium limosum KIST612]
 gi|308737485|gb|ADO35145.1| transcriptional regulator [Eubacterium limosum KIST612]
          Length = 147

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    HK I   I +     N++   LARK G+ PT     +        +  S +S+  
Sbjct: 29  MQELDHKAIGLRIRKQRTFLNMSRDQLARKIGITPTFLADIELGT-----KGFSLKSLNY 83

Query: 61  ILAATNETICQLLDLPFSDGRTTEK 85
             +    +   +L  P     T   
Sbjct: 84  FCSTLKMSSDAILYGPREYMGTKYS 108


>gi|307710167|ref|ZP_07646611.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619147|gb|EFN98279.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 68

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R +L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 2  QLKNRLKELRARDSLNQTDLAKLAGVSRQTVSLLERDEYT-----PSVVIALKISHIFNE 56

Query: 68 T 68
          T
Sbjct: 57 T 57


>gi|317057326|ref|YP_004105793.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315449595|gb|ADU23159.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 117

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I     +  L+   LA   G+ P+     +R      +R  S  +   I      +
Sbjct: 13 VGERIRSRRVKLGLSQEQLAELCGITPSYVGHIERA-----SRQLSLNTAISISTVLEIS 67


>gi|256545968|ref|ZP_05473323.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256398390|gb|EEU12012.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 166

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I    +  NLT   LA++  +   + +K ++   E     PS +++ K+       
Sbjct: 2  IGQKIKNKRKELNLTQEYLAKELNISRQAVSKWEKEISE-----PSMDNLIKLSEIFGVD 56

Query: 69 ICQLLDLPF 77
          I    +   
Sbjct: 57 IGYFKNEKE 65


>gi|253573993|ref|ZP_04851335.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251846470|gb|EES74476.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 111

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + + + I    ++ N T   LA  A L  +     +R      +R  S E++ KI  A 
Sbjct: 5  EIVGKRIREYRKQKNWTQEQLAEAASLHYSYIGGVERG-----DRNISLETLEKIAVAL 58


>gi|222081872|ref|YP_002541237.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726551|gb|ACM29640.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 174

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            +   HNL+   LA++AG+  ++ +  +          PS  ++ +IL      + +  
Sbjct: 2  RHLRVAHNLSQRELAKRAGVTNSTISLIESNSAN-----PSVGALKRILDGIPIGLAEFF 56

Query: 74 DLP 76
             
Sbjct: 57 AFE 59


>gi|221201363|ref|ZP_03574402.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD2M]
 gi|221208843|ref|ZP_03581841.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD2]
 gi|221171299|gb|EEE03748.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD2]
 gi|221178631|gb|EEE11039.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD2M]
          Length = 205

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 40/159 (25%), Gaps = 22/159 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA + G+  +  +  +R         P+   + K+ A  
Sbjct: 15  NERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAA-----SPTAVVLDKLAAGL 69

Query: 66  NETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
             ++  L             ++ ++          +        +P+  +   V  P   
Sbjct: 70  GISLAGLFGGDDGAPAQPLVRRAQQAEWRDPASGYARRNLSPPGWPSPLQLVEVDFPPGG 129

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
                           +    +          + +    
Sbjct: 130 ----------------RVAYDTGAREIAWHQQIWVVRGR 152


>gi|210634335|ref|ZP_03298071.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279]
 gi|210158862|gb|EEA89833.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279]
          Length = 152

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/105 (8%), Positives = 26/105 (24%), Gaps = 4/105 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + + ++     LT   LA +  +   + ++ +    E          I + L      
Sbjct: 4   LKDVLVQLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKL--IARELDVPVMR 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +  + +              +              F    +  G 
Sbjct: 62  LLDMPEHYCQSCGMMFTVPDQHGHE--ADGTETEDFCRWCYDQGA 104


>gi|167626085|ref|YP_001676379.1| XRE family transcriptional regulator [Shewanella halifaxensis
          HAW-EB4]
 gi|167356107|gb|ABZ78720.1| transcriptional regulator, XRE family [Shewanella halifaxensis
          HAW-EB4]
          Length = 69

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +  +    + T + LA K  +   + N  ++   +     PS    FK+       
Sbjct: 3  NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYD-----PSLPLAFKVARLFEMP 55


>gi|25027766|ref|NP_737820.1| putative transcription regulator [Corynebacterium efficiens
          YS-314]
 gi|23493049|dbj|BAC18020.1| putative transcription regulator [Corynebacterium efficiens
          YS-314]
          Length = 378

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 1  MTS-FSHKKIW---------EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          M+   SH + W           I+    R  LT + LA + G++P + +  +R G  
Sbjct: 1  MSMPTSHPRNWGVRPRFLNPHRIELARRRRGLTKTDLAVRLGVNPRTVSGYERSGAP 57


>gi|317508397|ref|ZP_07966068.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316253305|gb|EFV12704.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I E +  +  R   T   L   +G+  ++  + +    +     P+ E + ++  A  
Sbjct: 11 IAEELKALRSRRGFTLDELELASGVSRSTIWRIENGKSD-----PNVEQMTRLSRALG 63


>gi|315920969|ref|ZP_07917209.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694844|gb|EFS31679.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 105

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I EAI R  E  NLT   L    G+     +K +    
Sbjct: 37 IGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS 74


>gi|306821038|ref|ZP_07454657.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae
          ATCC 43715]
 gi|304550979|gb|EFM38951.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae
          ATCC 43715]
          Length = 164

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + + I ++      +    A   GLD T     +R       R  S E+++KI  A  
Sbjct: 4  ELVGQEIRKLRTSKGYSQEKFATVCGLDRTYVAAVERG-----KRNISIENLYKIANALE 58

Query: 67 ETICQLLDLPFSDGRT 82
           T+ +L D      +T
Sbjct: 59 ITLSELFDFGNPIQKT 74


>gi|284048500|ref|YP_003398839.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
 gi|283952721|gb|ADB47524.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
          Length = 92

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I  +I R  +   ++   LA + G+  +S  + +          P  +++ K+L A 
Sbjct: 31 IVSSIIRRRQELGISQRTLAERCGIPQSSIARIETLKTT-----PKLDTLVKLLQAL 82


>gi|256396415|ref|YP_003117979.1| hypothetical protein Caci_7309 [Catenulispora acidiphila DSM 44928]
 gi|256362641|gb|ACU76138.1| protein of unknown function DUF955 [Catenulispora acidiphila DSM
           44928]
          Length = 283

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 47/194 (24%), Gaps = 17/194 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGL-ARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++ + I     R   + + L AR AG   PT+ +  +        R    + + ++    
Sbjct: 7   EVGQRIRAARTRRGWSQAELAARLAGQPTPTAISYWESG-----RRSVGLDDLIELARVL 61

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
              I +LL  P                +            +              P +  
Sbjct: 62  GLGISELLPDPREQRPVGALLRAVAEQVDAQQLAEQLEAFAKDA------EQRPRPSLLW 115

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                    T +           P        G  ++++     +    ++       + 
Sbjct: 116 EVAPASPRDTAEALLIAAGVKQPPVRIEELVAGCGILIHPWDFEDVDGLMVNLESGPVVW 175

Query: 182 AKVLISRRGRSIDL 195
                ++  +   L
Sbjct: 176 VNKTQAQTRQRFTL 189


>gi|239941378|ref|ZP_04693315.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|239987839|ref|ZP_04708503.1| DNA-binding protein [Streptomyces roseosporus NRRL 11379]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + +A+        ++ + LAR+AG+     +K +  G       P    + + + 
Sbjct: 37 DLGQAVYDRRTALGISQTELARRAGMTQPQVSKLELGGTV--PTVPLLARLARAME 90


>gi|229188228|ref|ZP_04315304.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1]
 gi|228595248|gb|EEK52992.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1]
          Length = 65

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + +   ++   LA + GL  T  ++ +        + P+ +   KI     ++
Sbjct: 1  MNRIAELRKEKLISQEKLAEQVGLSRTYISEIENN-----KKQPNVKLAIKIAKVLGKS 54


>gi|255654408|ref|ZP_05399817.1| putative transcriptional regulator [Clostridium difficile
           QCD-23m63]
 gi|296449131|ref|ZP_06890918.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296880891|ref|ZP_06904839.1| DNA-binding protein [Clostridium difficile NAP07]
 gi|296261950|gb|EFH08758.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296428178|gb|EFH14077.1| DNA-binding protein [Clostridium difficile NAP07]
          Length = 183

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S  ++ I E + ++ +  +L+   +A+ +G+  +  ++ ++  +      P+  ++ K
Sbjct: 1   MQSL-NEIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCEVN-----PTISTLKK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I      +   L++   SD    +   K     +    G    +    F +  ++    +
Sbjct: 55  ITNGLKISFTSLMERQESDIELIQ---KSDVDHFIEDDGKYISYPIFPFDSKRRFEIFMI 111

Query: 121 PEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILI 158
                 +    A +             +       D ++
Sbjct: 112 EIEEGGNLDSNAELPGTQEFITVFSGEVTIKINGEDYVV 150


>gi|218780458|ref|YP_002431776.1| XRE family transcriptional regulator [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761842|gb|ACL04308.1| transcriptional regulator, XRE family [Desulfatibacillum
          alkenivorans AK-01]
          Length = 209

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 3  SFSHK------KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
            +H        + + I        +T   LA+ +G+   +  + +    + +       
Sbjct: 1  MSTHDLEDVLDTLAKNIVVARSALGITQGDLAKDSGISRATIAQLEAGEGDPKLST--LI 58

Query: 57 SIFKILAATNET 68
          S+ K L +T+  
Sbjct: 59 SLSKSLDSTHWH 70


>gi|168204476|ref|ZP_02630481.1| transcriptional regulator [Clostridium perfringens E str. JGS1987]
 gi|170663962|gb|EDT16645.1| transcriptional regulator [Clostridium perfringens E str. JGS1987]
          Length = 184

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/177 (9%), Positives = 52/177 (29%), Gaps = 11/177 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  +    NL+ S ++   G+      + +R         P+  +++KI      +
Sbjct: 8   IGNRLKTIRNNRNLSLSEVSEITGVSKAMLGQIERGQSN-----PTVSTLWKIANGLKVS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               +D    D +   +++    +           F       G +  T+ +    +  +
Sbjct: 63  FSMFIDENKEDLKVIYQRDITPIIEDDNKMKLYPIFPFDP-KEGFEVFTIELEPGCNHIS 121

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIVA 182
             +    ++    T+    + +    +  +L     +      + +         V 
Sbjct: 122 KPHNDGVEEYIIVTEGEIKIEI--DTETFVLQKEHSIRFMANKNHVYKNTSKNKAVF 176


>gi|110004082|emb|CAK98421.1| conserved hypothetical transcriptional regulator transcription
           regulator protein [Spiroplasma citri]
          Length = 177

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 14/128 (10%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  + +++NLT   LA +  L     ++ +R         PS E++  IL      
Sbjct: 3   LGEKIKLLRQKNNLTIEELANRCELTKGFISQLERDIS-----SPSIETLESILEVLGTN 57

Query: 69  ICQLLDLP---------FSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           +                    +  +   +   L+              + P G     + 
Sbjct: 58  LADFFKQEKNRKFVYAAEEHYKVEQNNYRIEWLVPNAQVNELEPILIQIKPQGESERILP 117

Query: 120 VPEIRSPH 127
                  +
Sbjct: 118 FEGQIFGY 125


>gi|25027261|ref|NP_737315.1| hypothetical protein CE0705 [Corynebacterium efficiens YS-314]
 gi|23492542|dbj|BAC17515.1| hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 169

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 1/116 (0%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNE 67
           +   +  + +    +   LA    +   + +  +R     G+   P   +++K+  A + 
Sbjct: 54  LGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDV 113

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               LL       +     E     + +P       FD  + P  +       P  
Sbjct: 114 PPAALLPAVGEKPQGICVDESLPVDVRWPAPRDEVLFDVPLTPPEHPRRADRQPPR 169


>gi|313633470|gb|EFS00294.1| signal peptidase I [Listeria seeligeri FSL N1-067]
          Length = 189

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSIDL 195
            K + TSM+P Y+ GD + +      +  D ++        TG+   K +I   G  I+ 
Sbjct: 43  VKVEGTSMVPTYQDGDRIFIEKITDPDRFDIIVFDEPPMIGTGEHFIKRVIGMPGDKIEF 102

Query: 196 M 196
            
Sbjct: 103 K 103


>gi|307705777|ref|ZP_07642622.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|307620695|gb|EFN99786.1| helix-turn-helix family protein [Streptococcus mitis SK597]
          Length = 68

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R +L  + LA+ AG+   + +  +R         PS     KI    NE
Sbjct: 2  QLKNRLKELRARDSLNQTDLAKLAGVSRQTVSLLERDEYT-----PSIIIALKISHIFNE 56

Query: 68 T 68
          T
Sbjct: 57 T 57


>gi|229101738|ref|ZP_04232455.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28]
 gi|228681686|gb|EEL35846.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|222530497|ref|YP_002574379.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222457344|gb|ACM61606.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 145

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ E    T + LA  AG++PTS  +++R   E      S  ++ +I  A    +  L
Sbjct: 15  IRKLREEKGWTINQLALYAGVNPTSIMRAERGESE-----LSLGNLLRIAKALKVDLNTL 69

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           ++         +++         P           
Sbjct: 70  VEESMDQIVLGDEELVPEEKDKTPDIYEIIRKAEN 104


>gi|168209872|ref|ZP_02635497.1| transcriptional regulator [Clostridium perfringens B str. ATCC
          3626]
 gi|170712005|gb|EDT24187.1| transcriptional regulator [Clostridium perfringens B str. ATCC
          3626]
          Length = 141

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          +  + +  N++   LA++  +   + +K +    +      +   + KI 
Sbjct: 7  LKELRKEKNISQEQLAKELNISRQAISKWESG--KAYPDIDNLILLRKIF 54


>gi|94152474|ref|YP_581881.1| putative transcriptional regulator Cro/CI family [Cupriavidus
           metallidurans CH34]
 gi|93358844|gb|ABF12931.1| putative transcriptional regulator Cro/CI family [Cupriavidus
           metallidurans CH34]
          Length = 233

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 7/107 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            A+ R      LT S +A++ GL  +++++ +   IE          +  +  A   ++ 
Sbjct: 5   NAMKRARRLARLTQSEIAKRLGLSQSTYHRWESGEIE-----VPEAKVISLSEALGVSVE 59

Query: 71  QLLDLPFSDGRTTEKK--EKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            L   P         +    +     F            + P  +  
Sbjct: 60  YLRGQPEPFDIEGMDEQLPADRKNYGFAAIHFSTGCPPLLLPISDGE 106


>gi|322806814|emb|CBZ04383.1| DNA-binding protein [Clostridium botulinum H04402 065]
          Length = 92

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +  + E    T   L +   +   + +  +   IE     PS  ++ KI    N ++
Sbjct: 3  GDRLKELREEKEFTQEELGKFLNVSRQTISGYESGAIE-----PSISNLVKIANIFNVSL 57

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLL 93
            LL           + +K   LL
Sbjct: 58 DYLLCRTKERYNLNLENKKNKELL 81


>gi|322386497|ref|ZP_08060124.1| cro/CI family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
 gi|321269416|gb|EFX52349.1| cro/CI family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
          Length = 75

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 5/63 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
                I   +  + E   +T   LA   G+   +    +          PS E   KI 
Sbjct: 1  MAKESNIITNLKSVRESRGMTQQELADHIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AAT 65
             
Sbjct: 56 QVF 58


>gi|319892096|ref|YP_004148971.1| transcriptional regulator, MerR family, near polyamine
          transporter [Staphylococcus pseudintermedius HKU10-03]
 gi|317161792|gb|ADV05335.1| transcriptional regulator, MerR family, near polyamine
          transporter [Staphylococcus pseudintermedius HKU10-03]
          Length = 179

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + I  +    NLT   L  +  L     ++ +          P+ E+   IL     
Sbjct: 2  EIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKT-----SPNMETFLNILEVLGT 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          +     D          K E+     
Sbjct: 57 SPRDFFDDKQVAKVHYPKSEQLSYCE 82


>gi|303326493|ref|ZP_07356936.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp.
           3_1_syn3]
 gi|302864409|gb|EFL87340.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp.
           3_1_syn3]
          Length = 183

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 10/138 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E + R+     L+   LA+ + ++PT+ ++  +         P+   + KI  A    
Sbjct: 7   IAENLQRICTERGLSLRQLAKLSDVNPTTLSQLAKGDGN-----PTINVLLKITTALKIP 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN--TVGVPEIRSP 126
              L+       +      K   +     + +   F+   +     +    V +      
Sbjct: 62  YTGLI---EEQKKEVTIVRKNERVPLIGENPTYQIFNYFPYSAQRNFEFFYVTLDPHSKS 118

Query: 127 HNGIYAIQTQDTRHKTQD 144
            +  +  + Q+       
Sbjct: 119 ESSGHTAKAQEYIFMISG 136


>gi|300857312|ref|YP_003782296.1| putative membrane-associated gene regulator [Clostridium
          ljungdahlii DSM 13528]
 gi|300437427|gb|ADK17194.1| putative membrane-associated gene regulator with a HTH motif
          [Clostridium ljungdahlii DSM 13528]
          Length = 344

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + I +  + +NLT   LA K  +  ++ +K +R        +P    I  I  A   + 
Sbjct: 8  GKFIIKKRKENNLTQKELAEKLYVSESAVSKWERGIS-----YPDISLILSICDALKISE 62

Query: 70 CQLLDLPFSDGRTTEKKEKE 89
           +L+       +   +++  
Sbjct: 63 HELITASEDLHQHEIERQAM 82


>gi|317130604|ref|YP_004096886.1| XRE family transcriptional regulator [Bacillus cellulosilyticus
          DSM 2522]
 gi|315475552|gb|ADU32155.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus
          DSM 2522]
          Length = 70

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 5/36 (13%), Positives = 16/36 (44%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          +   +  +  RH  + + LA++ G+   +    ++ 
Sbjct: 2  LRNRVKELRARHGFSQTELAQRVGVTRQTIGFIEKG 37


>gi|312114539|ref|YP_004012135.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
          17100]
 gi|311219668|gb|ADP71036.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
          17100]
          Length = 206

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I ++     L+ + LA+K G+  +  ++ +        R      +  +  A    + 
Sbjct: 27 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGA-----RGLHLSKMEALAGALGVPVT 81

Query: 71 Q 71
          +
Sbjct: 82 E 82


>gi|282855783|ref|ZP_06265089.1| transcriptional regulator, XRE family [Pyramidobacter piscolens
          W5455]
 gi|282586415|gb|EFB91677.1| transcriptional regulator, XRE family [Pyramidobacter piscolens
          W5455]
          Length = 95

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          ++ + +     + N+T   LA   G+     ++ +        R     ++ K
Sbjct: 29 QVIKTLIEARRKKNVTQKQLAEMTGITQPDISRLENGRGNPSLRT--LNNLAK 79


>gi|257081755|ref|ZP_05576116.1| predicted protein [Enterococcus faecalis E1Sol]
 gi|256989785|gb|EEU77087.1| predicted protein [Enterococcus faecalis E1Sol]
          Length = 81

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  +     +T   LA+K G+   +    +        R     ++ KI  A   T+  +
Sbjct: 12 IYDLRREKRMTQKELAKKTGITERTIINYEN--SIDALRNAKYSTVEKIATALGVTVDDI 69

Query: 73 LDLPFSDGRTT 83
               S+   +
Sbjct: 70 FLTSNSEKPKS 80


>gi|315497559|ref|YP_004086363.1| transcriptional regulator, xre family [Asticcacaulis excentricus
          CB 48]
 gi|315415571|gb|ADU12212.1| transcriptional regulator, XRE family [Asticcacaulis excentricus
          CB 48]
          Length = 62

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +  +   HNL+ + LA+K  +   + N  +    +     PS    FKI    
Sbjct: 3  NRLKVLRAEHNLSQADLAQKLDVSRQTVNAIETEKYD-----PSLPLAFKIADVF 52


>gi|226939045|ref|YP_002794116.1| hypothetical protein LHK_00111 [Laribacter hongkongensis HLHK9]
 gi|226713969|gb|ACO73107.1| HTH_XRE domain containing protein [Laribacter hongkongensis
          HLHK9]
          Length = 125

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK-RFGIEGRNRWPSTESIFK 60
           +F H     A+  + ++  L+ + LA K GL   +  + + +     +    + E +  
Sbjct: 5  PAFEHPDFPVALKTLRKQLGLSRTALAGKVGLSTAAIQRYEAQDASHIKPSREAYERLCA 64

Query: 61 ILAAT 65
          +LA  
Sbjct: 65 VLAEL 69


>gi|223986398|ref|ZP_03636404.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM
          12042]
 gi|223961640|gb|EEF66146.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM
          12042]
          Length = 358

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              KI   I    +    T S LA   G+   + +K +          P    +  +  
Sbjct: 1  MDQMKIGGFIALCRKEKGWTQSQLAEILGITDKAVSKWETGKS-----LPDYALLTPLSE 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          A   T+ +L            +K  ++ L    
Sbjct: 56 ALGITLSELFSGERIRAEDLMEKTDQVLLEVIA 88


>gi|167748234|ref|ZP_02420361.1| hypothetical protein ANACAC_02978 [Anaerostipes caccae DSM 14662]
 gi|167652226|gb|EDR96355.1| hypothetical protein ANACAC_02978 [Anaerostipes caccae DSM 14662]
          Length = 282

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I  +    N++ S LA K G+   + N+ ++   E 
Sbjct: 7  IKEIRSLLNMSQSELADKIGVSFATVNRWEKGRCEP 42


>gi|116494051|ref|YP_805785.1| XRE family transcriptional regulator [Lactobacillus casei ATCC
          334]
 gi|191637372|ref|YP_001986538.1| Rep protein [Lactobacillus casei BL23]
 gi|116104201|gb|ABJ69343.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC
          334]
 gi|190711674|emb|CAQ65680.1| Rep protein [Lactobacillus casei BL23]
 gi|327381414|gb|AEA52890.1| XRE family transcriptional regulator [Lactobacillus casei LC2W]
 gi|327384579|gb|AEA56053.1| XRE family transcriptional regulator [Lactobacillus casei BD-II]
          Length = 117

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          ++ I  +A     +   LA KAG+   S  + K+         PSTE++ K+      ++
Sbjct: 4  YDRIKTLASNRGWSLQKLALKAGIGINSIYRWKKMT-------PSTENVQKVADVLQVSV 56

Query: 70 CQLLDLPFSDGRTT 83
            LL    +     
Sbjct: 57 DYLLGNTDNPNPDN 70


>gi|92116675|ref|YP_576404.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14]
 gi|91799569|gb|ABE61944.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis
           X14]
          Length = 483

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 7/105 (6%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M + S KK  +     R+ ++  L+ + +A   G+ P+  N  +R       R  + + +
Sbjct: 1   MATNSGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQ-----RPVTAQIL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            ++    +  +  L             +    PL           
Sbjct: 56  LRLAETYDLDLRDLATADEDRFFAELNEVFSDPLFRQIDVPKQEL 100


>gi|83590550|ref|YP_430559.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83573464|gb|ABC20016.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 67

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + ++     L+   +A   G+  +++   +R       R+P  E++ K+      T+ 
Sbjct: 8  EKLYQLRRERGLSQVKVASAVGITQSAYAMIERGQ-----RYPRKETMKKLADYFGLTVD 62

Query: 71 QLLD 74
          +L  
Sbjct: 63 ELFF 66


>gi|78065731|ref|YP_368500.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77966476|gb|ABB07856.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 206

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA ++G+  +  +  +R         P+   + K+ A  
Sbjct: 15  NERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASA-----SPTAVVLDKLAAGL 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEI 123
             ++  L      D  T           +  P+      +     +P+  +   V  P  
Sbjct: 70  GVSLAGLFGGDQDDTPTQPLARHAQQAEWRDPASGYVRRNLSPAGWPSPIQLVEVDFPPG 129


>gi|30262515|ref|NP_844892.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47778059|ref|YP_019162.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|52142975|ref|YP_083853.1| DNA-binding protein [Bacillus cereus E33L]
 gi|165868912|ref|ZP_02213572.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167631977|ref|ZP_02390304.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167637695|ref|ZP_02395974.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170685312|ref|ZP_02876536.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170704891|ref|ZP_02895357.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177649731|ref|ZP_02932733.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190565261|ref|ZP_03018181.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196040422|ref|ZP_03107723.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218903655|ref|YP_002451489.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227814666|ref|YP_002814675.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228915109|ref|ZP_04078706.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228927582|ref|ZP_04090634.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228933813|ref|ZP_04096659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228946161|ref|ZP_04108495.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229600860|ref|YP_002866842.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254685091|ref|ZP_05148951.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722499|ref|ZP_05184287.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254737541|ref|ZP_05195244.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254743274|ref|ZP_05200959.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254751856|ref|ZP_05203893.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254760376|ref|ZP_05212400.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|301054058|ref|YP_003792269.1| DNA-binding protein [Bacillus anthracis CI]
 gi|30257147|gb|AAP26378.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47551764|gb|AAT31637.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|51976444|gb|AAU17994.1| DNA-binding protein [Bacillus cereus E33L]
 gi|164715638|gb|EDR21155.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167514244|gb|EDR89611.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167532275|gb|EDR94911.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170130692|gb|EDS99553.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170670672|gb|EDT21411.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172084805|gb|EDT69863.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190563288|gb|EDV17253.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196028907|gb|EDX67513.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218535205|gb|ACK87603.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227004640|gb|ACP14383.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228813507|gb|EEM59794.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228825885|gb|EEM71672.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832062|gb|EEM77647.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228844538|gb|EEM89592.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229265268|gb|ACQ46905.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|300376227|gb|ADK05131.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI]
          Length = 66

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I         T   LA++ G+   +    ++         PS    FKI     + I 
Sbjct: 4  NRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYN-----PSLILAFKIANVFEKPIT 58

Query: 71 QLLDLPF 77
           + D   
Sbjct: 59 DVFDYQE 65


>gi|53690271|ref|ZP_00121920.2| COG1396: Predicted transcriptional regulators [Bifidobacterium
           longum DJO10A]
 gi|189439959|ref|YP_001955040.1| Xre family transcriptional regulator [Bifidobacterium longum
           DJO10A]
 gi|189428394|gb|ACD98542.1| Xre-type transcriptional regulator [Bifidobacterium longum DJO10A]
          Length = 362

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 40/150 (26%), Gaps = 7/150 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +  +  + NLT   LA   G+   + +K +         +P  + +  I      T+ 
Sbjct: 5   ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV-PEIRSPHNG 129
            L+    S    +        +     + S     S           +         H  
Sbjct: 60  DLVLGDVSRPAASASAAGSSNVDSSAETASPLAASSKTAGIIAPIAELAQDITGYDEHRR 119

Query: 130 IYAIQ-TQDTRHKTQDTSMLPLYRKGDILI 158
            +A+              +  L+   + ++
Sbjct: 120 RFALLIAGGVAVIVAGVGIGNLFDSSNSIL 149


>gi|124268515|ref|YP_001022519.1| putative transcription regulator protein [Methylibium
          petroleiphilum PM1]
 gi|124261290|gb|ABM96284.1| putative transcription regulator protein [Methylibium
          petroleiphilum PM1]
          Length = 94

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 17/46 (36%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             +  ++   +    +   LT + LA + G+   + +  +R    
Sbjct: 5  PVRTADQLPGLLQSFRKAAGLTQADLAARLGVTQQTLSALERNAGT 50


>gi|319784783|ref|YP_004144259.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170671|gb|ADV14209.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 202

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR--WPSTESI 58
          ++   +  +    NL+ + LA KAG+   + ++ +R     R +  WP   ++
Sbjct: 18 RVGRRVRALRLERNLSLADLAAKAGVSIGALSQIERGMSSLRVKVIWPLAAAL 70


>gi|307243674|ref|ZP_07525814.1| transcriptional regulator, PvuIIC family protein
          [Peptostreptococcus stomatis DSM 17678]
 gi|306492883|gb|EFM64896.1| transcriptional regulator, PvuIIC family protein
          [Peptostreptococcus stomatis DSM 17678]
          Length = 68

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + + +      L+    A K+GL  T  +  +      + R  + +++ KI  A      
Sbjct: 9  KNLKKYRNEMGLSQEAFAEKSGLHRTYISALE-----CKKRSIALDNVQKIADALEIEPY 63


>gi|296269222|ref|YP_003651854.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296092009|gb|ADG87961.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 432

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S   I E I  + ++  L+ + LA    L  +  +  +        R P+   +  I 
Sbjct: 1  MASQGSIGERIKMLRKQRGLSQAQLAH-PELSDSYVSLIESG-----KRTPTPAVLELIA 54

Query: 63 AATNET 68
               +
Sbjct: 55 QKLGCS 60


>gi|295092301|emb|CBK78408.1| Predicted transcriptional regulator with C-terminal CBS domains
          [Clostridium cf. saccharolyticum K10]
 gi|295114876|emb|CBL35723.1| Predicted transcriptional regulator with C-terminal CBS domains
          [butyrate-producing bacterium SM4/1]
          Length = 95

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I  A+ +      L+   LA   G+  +S  + +          P+ +++ KI     
Sbjct: 31 IVTAMVKQRNAMGLSQRELADMCGIPQSSVARIESLKTT-----PNLDTLLKIFCQLG 83


>gi|260433496|ref|ZP_05787467.1| transcriptional regulator, XRE family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417324|gb|EEX10583.1| transcriptional regulator, XRE family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 288

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            ++R  ++  ++ S LAR  G+D ++ ++      +   R P+   +    +A   +   
Sbjct: 17  RLNRAMDQRKMSQSALARTIGVDRSTVSQLL---TDSGARLPNAHVVGSCASALGVSADW 73

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119
           LL L        E     + +   P +              G K   V 
Sbjct: 74  LLSLSNRPESAAELLASSLTMTEAPRALVDERIFEWHQEAAGYKIRYVP 122


>gi|257790856|ref|YP_003181462.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
 gi|257474753|gb|ACV55073.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
          Length = 261

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 5/98 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +    +L+ + LA   G+   S  K +         +P  + + K+      ++ 
Sbjct: 5   DNLQHLRGTRDLSQAQLATLLGVSRQSVAKWE-----AEKSYPEMDKLIKLCDLFECSLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
            L+    +   T  +   E              +D  +
Sbjct: 60  DLVRGDLTGCATANEAIVEAEPASAATPVDKDGYDEHM 97


>gi|228987486|ref|ZP_04147605.1| Transcriptional regulator [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228772218|gb|EEM20665.1| Transcriptional regulator [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 115

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I R+ +  +LT   L+ + GL        +          P  ES+  + +  N +
Sbjct: 5  VGQNIKRLRKSFDLTQEQLSERTGLSRGQIKNWETD-----RHEPDLESLKVLASYFNTS 59


>gi|229070989|ref|ZP_04204216.1| transcriptional regulator, XRE [Bacillus cereus F65185]
 gi|228712171|gb|EEL64119.1| transcriptional regulator, XRE [Bacillus cereus F65185]
          Length = 108

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  +T   LA    L  ++    +R       R P   ++ +I    N +
Sbjct: 5  GNIIRDLRKQKGITQKELALSLKLSESTIGMYERNE-----RQPDYNTLIRIADYFNVS 58


>gi|258511056|ref|YP_003184490.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477782|gb|ACV58101.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 206

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  +     L+ + LA K G+     ++ +R   E     P  +++ K+        
Sbjct: 7  GEYLRSLRLARKLSINQLAEKTGISAAHISRLERNVRE----VPRPDTLRKLALGLGVPF 62

Query: 70 CQ 71
           +
Sbjct: 63 DE 64



 Score = 39.4 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             + R+ E   L+ S +A  AG+      + +        R P   ++ ++    
Sbjct: 85  RRLQRLRESKGLSLSDVAHIAGISEAYLARLESAEG----RLPGVTTLHRLAQVF 135


>gi|197287327|ref|YP_002153199.1| transcriptional regulator [Proteus mirabilis HI4320]
 gi|227356988|ref|ZP_03841360.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|194684814|emb|CAR46896.1| putative transcriptional regulator [Proteus mirabilis HI4320]
 gi|227162866|gb|EEI47825.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 38/144 (26%), Gaps = 3/144 (2%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              +++ +   + ++ +  NL+ + L+RK+G+   + +K +        R  + E+I  I
Sbjct: 6   PKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSN--PRIDTLEAIA-I 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
                                  K         F      G               +  P
Sbjct: 63  ALGFPLGDLFSFTREEYPRLERHKPIVGDYAQEFKFRIGIGNITEIWHIEMKHGAIINSP 122

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDT 145
                      + +     +  + 
Sbjct: 123 AHADGTQEHIMVYSGKLMMRFAND 146


>gi|163839462|ref|YP_001623868.1| Cro/CI family transcriptional regulator [Renibacterium
          salmoninarum ATCC 33209]
 gi|162952938|gb|ABY22453.1| transcriptional regulator, Cro/CI family [Renibacterium
          salmoninarum ATCC 33209]
          Length = 200

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + +   + R   R  L+ S  AR+AG+  ++ ++ +          PS E+++ I  A 
Sbjct: 23 RELVAAGLIRERARAGLSLSETARRAGIAKSTLSQLESGVGN-----PSVETLWAICTAL 77

Query: 66 NETI 69
            + 
Sbjct: 78 EISF 81


>gi|158340946|ref|YP_001522113.1| hypothetical protein AM1_E0029 [Acaryochloris marina MBIC11017]
 gi|158311187|gb|ABW32799.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
           +R  L+ + LA + G+ P S    +             + + ++L  T E +C  +   
Sbjct: 23 RKRAELSQTQLANELGVKPQSIGNWENGRSIPTLNPCQVKKLCEMLNVTLEELCNAVHWE 82

Query: 77 FS 78
            
Sbjct: 83 GP 84


>gi|114883636|ref|YP_740326.1| XRE-family transcriptional regulator protein [Plasmid pLB1]
 gi|113734277|dbj|BAF30453.1| XRE-family transcriptional regulator protein [Plasmid pLB1]
          Length = 85

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +I   I R  +   +T   L+ ++G+  +  +   R   +G     + ES+  +  
Sbjct: 15 QIGANIARELKNLGITQGELSERSGVAASHISYMVRG--QGNPTLATLESLADVFR 68


>gi|288227164|gb|ADC45065.1| putative transcriptional regulator (helix-turn-helix motif,
          XRE-like) [Cupriavidus metallidurans CH34]
          Length = 101

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + +AI     R  ++ + LAR+A    +  +  +        R P+  ++ KI  A + 
Sbjct: 2  NVGQAIKLCRTRRGISQADLARQAECSVSYLSMLENN-----KRDPTLSTMTKIAHALHM 56

Query: 68 T 68
           
Sbjct: 57 P 57


>gi|15900920|ref|NP_345524.1| transcriptional regulator, putative [Streptococcus pneumoniae
           TIGR4]
 gi|111657887|ref|ZP_01408599.1| hypothetical protein SpneT_02000929 [Streptococcus pneumoniae
           TIGR4]
 gi|149242896|pdb|2P5T|A Chain A, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 gi|149242898|pdb|2P5T|C Chain C, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 gi|149242900|pdb|2P5T|E Chain E, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 gi|149242902|pdb|2P5T|G Chain G, Molecular And Structural Characterization Of The Pezat
           Chromosomal Toxin-Antitoxin System Of The Human Pathogen
           Streptococcus Pneumoniae
 gi|14972524|gb|AAK75164.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4]
          Length = 158

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 117 DLSDLIHTNIYLVETFDE 134


>gi|288956863|ref|YP_003447204.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288909171|dbj|BAI70660.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 221

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  +     LT   L+ ++G+  +  +  +R         P+   + ++ A    
Sbjct: 31  RLATRLRALRADRGLTLDSLSERSGVSRSMISLVERGES-----SPTASVLDRLAAGLGV 85

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPP-SGSGGFFDSGVFPTGNKWNTVGVPEI 123
           T+  L         +   ++ +      P             FP+  +   V +P  
Sbjct: 86  TLATLFAEAERRDASPVARQSDQIAWTDPATGYRRRNLSPPGFPSPIELVEVELPAG 142


>gi|284034421|ref|YP_003384352.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283813714|gb|ADB35553.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 200

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +   +    +   ++ S LAR++G+   + ++ +          P+ E++F +  A  
Sbjct: 14 LGVNLRARRDEQGISLSELARRSGIAKGTLSQLESGAGN-----PTIETVFSLSNALG 66


>gi|270307696|ref|YP_003329754.1| hypothetical protein DhcVS_264 [Dehalococcoides sp. VS]
 gi|270153588|gb|ACZ61426.1| hypothetical protein DhcVS_264 [Dehalococcoides sp. VS]
          Length = 76

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          + ++ E+  L+   LAR+ G+   + N+ +    +   
Sbjct: 12 LKKIREQLTLSQEDLARQLGVSYATVNRWENGQSKPSK 49


>gi|269794969|ref|YP_003314424.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
 gi|269097154|gb|ACZ21590.1| predicted transcriptional regulator [Sanguibacter keddieii DSM
          10542]
          Length = 204

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +    ++ +L+   LA++AG+     ++ +R         PS  SI ++ +A   +
Sbjct: 23 LGATVRAARKQLDLSVQALAQRAGVSLGLVSQLERGLGN-----PSLHSIQRLASALGVS 77


>gi|317047999|ref|YP_004115647.1| XRE family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949616|gb|ADU69091.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 181

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 9/89 (10%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H+ +  A+ ++ + +  + +  A + G+      + +R         P+  +++KI    
Sbjct: 5  HQHLSLALKQLRQANGWSLTLAAERTGVSKAMLGQIERGES-----SPTVATLWKIATGF 59

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLY 94
          N      +              +    + 
Sbjct: 60 NVPFSFFIQGSELPPGAAATFSQTNAQMQ 88


>gi|251789116|ref|YP_003003837.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537737|gb|ACT06358.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 81

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I +  E   L+   LA   G+D +   + +R       R  +  ++ +I  A   +
Sbjct: 17 LGQTIRQRRELLGLSQENLASATGIDRSHMGRIERGE-----RNVTLLNLLRIADALEWS 71

Query: 69 ICQ 71
          + Q
Sbjct: 72 LEQ 74


>gi|229829704|ref|ZP_04455773.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles
          DSM 14600]
 gi|229791693|gb|EEP27807.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles
          DSM 14600]
          Length = 141

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + +  + + H+L+   LA K G+   + +K +          P  E    +  A   +I 
Sbjct: 5  DNLIELRKYHDLSQEELAEKIGVSRQTLSKYETGES-----LPDIEKGKLLADAFGVSID 59

Query: 71 QLLDLP 76
           L+   
Sbjct: 60 DLISYD 65


>gi|291299224|ref|YP_003510502.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568444|gb|ADD41409.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 420

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 2/127 (1%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN--RWPSTESIFKILAATNETIC 70
           +         T   LA++ G++ +S  + +R         R    E +   +      + 
Sbjct: 6   LAARRRARGHTQETLAQRLGVNVSSVARWERGLAIPYPHVRRALAEELGLPVEELTALLT 65

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
              D   +    +         L    +G  G   +   P       +  P         
Sbjct: 66  PAADPEPAAPSESVPPSWNRRRLEALATGLRGAQPATDTPGHAAHAWLVTPPPAEWSWLA 125

Query: 131 YAIQTQD 137
             I+   
Sbjct: 126 TRIRDHH 132


>gi|254525261|ref|ZP_05137316.1| gp08 [Stenotrophomonas sp. SKA14]
 gi|219722852|gb|EED41377.1| gp08 [Stenotrophomonas sp. SKA14]
          Length = 391

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/196 (8%), Positives = 41/196 (20%), Gaps = 20/196 (10%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + R+     +    LA  AGL   + N     G    +  P+          T   +  
Sbjct: 4   RLKRLLTEAGIKQGDLASAAGLSRPALNALINHGQLPTSCDPAVVRAAISSCLTQHGVTD 63

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                              P             +  +         +    +       +
Sbjct: 64  AHWHEKEGPTCGVTPAPVSPPQDTDNDNDIHDEEDPML--------LRFQALTPQAKRHF 115

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSA--IQVNCGDR--LLIKPRTGDIVAK---- 183
            + +          S   ++   DI  +  +       G    ++ +   G    +    
Sbjct: 116 GLTSNPFA---DPASAEEVFLSPDIRYVRESMYQVARHGGFAAVIGESGAGKSTLREDLV 172

Query: 184 -VLISRRGRSIDLMSL 198
             +       I +   
Sbjct: 173 DRIQREEQAVIVIQPY 188


>gi|167772036|ref|ZP_02444089.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM
          17241]
 gi|167665834|gb|EDS09964.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM
          17241]
          Length = 96

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I   I    ++  ++   LA K+ L  ++ +  +           S  ++++I AA N
Sbjct: 31 KNIGFRIQFFRKKCGMSQEELAEKSNLSYSTISHIESTSTYP----MSIIALYRIAAALN 86

Query: 67 ETICQ 71
              Q
Sbjct: 87 IAPYQ 91


>gi|220925738|ref|YP_002501040.1| XRE family transcriptional regulator [Methylobacterium nodulans
          ORS 2060]
 gi|219950345|gb|ACL60737.1| transcriptional regulator, XRE family [Methylobacterium nodulans
          ORS 2060]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 21/39 (53%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          I + I+R+ ++  L+   LA++ G+  + F K ++    
Sbjct: 13 IGQRIERLRKQAKLSREALAQRLGISDSQFGKYEKGLNR 51


>gi|108758699|ref|YP_628542.1| putative transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108462579|gb|ABF87764.1| putative transcriptional regulator [Myxococcus xanthus DK 1622]
          Length = 272

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +     L+   LAR+ G+     ++ +          P+ E +  I       
Sbjct: 3  LGATLRLLRTDAGLSLRDLARRIGVSSAYLSRVENGVDAP----PTPERLSAIARELRVP 58

Query: 69 ICQLLDLPFSDGR 81
             L+D+      
Sbjct: 59 SSLLMDVANRMSP 71


>gi|325263076|ref|ZP_08129811.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5]
 gi|324031469|gb|EGB92749.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5]
          Length = 80

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +  + +   +T + LA  +G+  ++ +   +    G+ R P  +++ K+    N T
Sbjct: 7  IIKRLTELCDERKITINKLASLSGITQSTVDNLIK----GKTRNPKLKTLHKLAIGLNMT 62

Query: 69 ICQLLDLPFSDGRTTEKK 86
          I +LLD P  +  T E +
Sbjct: 63 ISELLDFPEMNETTFEDE 80


>gi|323490301|ref|ZP_08095516.1| AnsR [Planococcus donghaensis MPA1U2]
 gi|323395971|gb|EGA88802.1| AnsR [Planococcus donghaensis MPA1U2]
          Length = 118

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K++ + I  + E   L+   LA   G   ++    +        +  S   + ++     
Sbjct: 2  KQLSKRIKDLREAKGLSTEELADAIGFAKSTVWAYESG-----KKQVSVVHLERLADYFE 56

Query: 67 ET 68
           +
Sbjct: 57 IS 58


>gi|310829543|ref|YP_003961900.1| Methylase involved in ubiquinone/menaquinone biosynthesis
          [Eubacterium limosum KIST612]
 gi|308741277|gb|ADO38937.1| Methylase involved in ubiquinone/menaquinone biosynthesis
          [Eubacterium limosum KIST612]
          Length = 380

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I   I  + ++  ++   LA   G+ P S +K +          P    +  +     
Sbjct: 2  KAIQLRIGTLRKQKGISQKMLAGAIGVTPQSVSKWETGAA-----LPDIGLLPALATFFE 56

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           ++ +LL L        E     +   +    
Sbjct: 57 VSVDELLGLKSLPDDAYEPSGTGLSGYWSERM 88


>gi|269120755|ref|YP_003308932.1| peptidase S24 and S26 domain protein [Sebaldella termitidis ATCC
           33386]
 gi|268614633|gb|ACZ09001.1| peptidase S24 and S26 domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 227

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 20/186 (10%)

Query: 41  SKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
           S +   +G+ R  S   +  +         +L  +     +  E +             S
Sbjct: 40  SLKKLEDGKIRSISPRVLHTLAEIYGLNAVELFKMADFLDKNYEIERVHFIDYKMIGVSS 99

Query: 101 GGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM----LPLYRKGDI 156
             +                + E+          +      K +D SM          G  
Sbjct: 100 FEYVQFN-----------DIQELYDATELYNQRENDTYVIKMKDQSMQGLENRNIPDGSY 148

Query: 157 LILNSAIQVNC---GDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVE-MSDI 212
           L++ S +  N     + + I         + L       + L S N  Y    +  + D+
Sbjct: 149 LVVESDVPDNIFKLHNEVCIFKFMDKFYVRELQIV-NERVFLRSFNKKYADIMISNLRDL 207

Query: 213 EWIARI 218
           +   R+
Sbjct: 208 KCEGRV 213


>gi|253987834|ref|YP_003039190.1| prophage protein gp48 [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779284|emb|CAQ82445.1| prophage protein gp48 [Photorhabdus asymbiotica]
          Length = 93

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +++ E +    +   LT S +A + G+ P +  K +    +      S E++ +   A  
Sbjct: 31 ERLQETLAEWRKFAGLTRSQVAERMGVTPPTVTKMENNVTKA-----SIETLVRYAQACG 85

Query: 67 ETICQ 71
              Q
Sbjct: 86 IQNPQ 90


>gi|229197740|ref|ZP_04324459.1| Helix-turn-helix domain protein [Bacillus cereus m1293]
 gi|228585685|gb|EEK43784.1| Helix-turn-helix domain protein [Bacillus cereus m1293]
          Length = 262

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 31/135 (22%), Gaps = 6/135 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ +   L+   LA K      + +K +         +P TE +  I      ++
Sbjct: 4   GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L    ++          +         + G   S     G     +           
Sbjct: 59  -DYLLKETAEQSNENVDGYYVSQEMAEGYVAYGQKISKYIALGFSLLILSTIPYLLFKEN 117

Query: 130 IYAIQTQDTRHKTQD 144
                          
Sbjct: 118 ATMSTFLVIIVAVLG 132


>gi|257792397|ref|YP_003183003.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317490265|ref|ZP_07948753.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA]
 gi|325833618|ref|ZP_08166067.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257476294|gb|ACV56614.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316910759|gb|EFV32380.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA]
 gi|325485542|gb|EGC88011.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 83

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 4/44 (9%), Positives = 14/44 (31%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          ++   +        L+ + LA   G+   + +  +        +
Sbjct: 20 ELCNRLKAARAEAGLSQAELAGLVGVSRQTISSIETGLFNPTAK 63


>gi|323339887|ref|ZP_08080156.1| signal peptidase IB [Lactobacillus ruminis ATCC 25644]
 gi|323092760|gb|EFZ35363.1| signal peptidase IB [Lactobacillus ruminis ATCC 25644]
          Length = 179

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
            +    SM P    G+ +++    +V   + ++     G    K +I   G  I
Sbjct: 35  VEVVGNSMEPALHDGNEVLVRKYGKVKRFEIVIFTLPNGKTCVKRIIGLPGDMI 88


>gi|154505092|ref|ZP_02041830.1| hypothetical protein RUMGNA_02602 [Ruminococcus gnavus ATCC
          29149]
 gi|166030597|ref|ZP_02233426.1| hypothetical protein DORFOR_00263 [Dorea formicigenerans ATCC
          27755]
 gi|210617570|ref|ZP_03291626.1| hypothetical protein CLONEX_03848 [Clostridium nexile DSM 1787]
 gi|153794571|gb|EDN76991.1| hypothetical protein RUMGNA_02602 [Ruminococcus gnavus ATCC
          29149]
 gi|166029599|gb|EDR48356.1| hypothetical protein DORFOR_00263 [Dorea formicigenerans ATCC
          27755]
 gi|210149235|gb|EEA80244.1| hypothetical protein CLONEX_03848 [Clostridium nexile DSM 1787]
          Length = 138

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST-ESIFKILAATNETICQ 71
          I  + + +N+T + LA++ G+  +     +     G  R  S  + + ++   +   +  
Sbjct: 4  IKELRKENNITVAELAKELGISQSMLTNYENG--NGTPRDDSIWDRLSQLFGVSKSHVMG 61

Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFP 96
          L        R  + K          
Sbjct: 62 LTTDIDVVHRKKKFKAVVDMSEPIS 86


>gi|326387341|ref|ZP_08208951.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326208522|gb|EGD59329.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 76

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              K +     R+     LT   +A ++G      +  +R       R P+  +++++ 
Sbjct: 1  MDMRKLVGRNFARLRRDRGLTQEQVAERSGFSQQYLSNLERG-----WRNPTVITLYELS 55

Query: 63 AATNETICQ 71
           A   +   
Sbjct: 56 LALGVSHVD 64


>gi|325478374|gb|EGC81489.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 143

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E + ++    NLT   LA K+GL   +    +        R PS E + KI  A +  I
Sbjct: 4  GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGN-----RSPSKEQLQKISKALDCDI 58

Query: 70 CQLLDLPFSDGRTTEK 85
            L++   +       
Sbjct: 59 SALINHEPNSIFEIMH 74


>gi|322411261|gb|EFY02169.1| Hypothetical phage associated protein [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 169

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 15/41 (36%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
             +  + +   LT  GLA   G+   +    +    + ++
Sbjct: 1  MNRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKS 41


>gi|289433695|ref|YP_003463567.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|289169939|emb|CBH26479.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
          Length = 67

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+   +  + E   +  + LA    +   + +  ++         PS E   KI      
Sbjct: 2  KVINRVKALREEKGIAQNDLASILEVSRQTIHAIEKGKYN-----PSLELSLKIAKYFEL 56

Query: 68 TICQLLDLPF 77
          T+ ++  L  
Sbjct: 57 TVEEIFQLEE 66


>gi|289167670|ref|YP_003445939.1| transcriptional regulator, XRE family [Streptococcus mitis B6]
 gi|288907237|emb|CBJ22072.1| transcriptional regulator, XRE family [Streptococcus mitis B6]
          Length = 74

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA   G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESTGMTQQELADLIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|260438749|ref|ZP_05792565.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876]
 gi|292808735|gb|EFF67940.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876]
          Length = 67

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            ++ + ++  +    LA    +   +    +          PS +  FKI    N +
Sbjct: 3  NRLEELRKQRGIKQEELANALEVSRQTIGSLENGRYN-----PSIQLAFKIAKYFNMS 55


>gi|260595940|ref|YP_003208511.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032]
 gi|260215117|emb|CBA26887.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 45/115 (39%), Gaps = 5/115 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I +++ R   R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A +  
Sbjct: 8   IAKSLVRERTRAGLSLAEVARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVALDIP 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
             +L++   +  +   + E    +       +            + +  +  PE 
Sbjct: 63  FARLMEPQANKTQVIRRGEGPKVVAELANYQAILLATCPPGARRDIYLLLTQPEG 117


>gi|239981427|ref|ZP_04703951.1| DNA-binding protein [Streptomyces albus J1074]
          Length = 107

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + +A+        L+ + LA +AG+     ++ +  G +     P    + + L 
Sbjct: 33 DLGQAVYDRRVELGLSQAELAERAGMTQPQVSRME--GGDTVPTLPLLRRLARALE 86


>gi|239932598|ref|ZP_04689551.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291440960|ref|ZP_06580350.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291343855|gb|EFE70811.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 190

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 16/131 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  ++ KI  A  
Sbjct: 9   QSLARNVRRWRTERGFTLDALAARAGVSRGMLIQIEQARTN-----PSIGTVVKIGDALG 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKW 115
            +I  LLD            ++ + L +              +             G   
Sbjct: 64  VSITTLLDYERGPKVRIVPADRAVRLWHTEAGSYNRLLAGAEAPGPLEMWDWRLMPGEGS 123

Query: 116 NTVGVPEIRSP 126
            +   P     
Sbjct: 124 ASDPHPTGTVE 134


>gi|229131934|ref|ZP_04260799.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196]
 gi|228651525|gb|EEL07495.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787]
 gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787]
          Length = 122

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +K I + I     + NLT   +A K G+ P   +  +           S  ++  I  
Sbjct: 3  LDYKAIGKRIKIARIKKNLTQEAIADKIGITPQHVSNIETGNA-----SVSLTTLVAIAN 57

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
              ++  LL       +   +KE +    
Sbjct: 58 TLTVSVNDLLCDTVLISKAVFEKEAKELFE 87


>gi|182680496|ref|YP_001834642.1| XRE family transcriptional regulator [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|182636379|gb|ACB97153.1| transcriptional regulator, XRE family [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 477

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I R+ E H LT    A + G+ P+  N+ +        R  S   +  +  + 
Sbjct: 11 IRRLREAHALTQGAFAERLGISPSYLNQIENNQ-----RPLSASVLLSLAQSF 58


>gi|254254842|ref|ZP_04948159.1| transcriptional regulator XRE family with cupin sensor domain
           [Burkholderia dolosa AUO158]
 gi|124899487|gb|EAY71330.1| transcriptional regulator XRE family with cupin sensor domain
           [Burkholderia dolosa AUO158]
          Length = 203

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 7/120 (5%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN--RWPSTESIF 59
            + +  ++ E I R+     LT   L+R AG+  +  ++ +R          W  T ++ 
Sbjct: 19  PATTPPRVGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALG 78

Query: 60  KILAATNETICQLLD-----LPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             L                               ++ +           +     P G  
Sbjct: 79  ITLDELFSQPKTPETIRVDGPHDIPTLAGHDGRYQLRVWGPIDLAGKFEWYELTLPAGGA 138


>gi|322383792|ref|ZP_08057543.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321152004|gb|EFX44947.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 137

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     +     +  M  ++  +    A+K GL  T+    +          P ++ + K
Sbjct: 15 MEMKYKEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNT-----PPSQILGK 69

Query: 61 ILAATNET 68
          I    N +
Sbjct: 70 IAEGFNTS 77


>gi|312113826|ref|YP_004011422.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
          17100]
 gi|311218955|gb|ADP70323.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
          17100]
          Length = 199

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I ++     L+ + LA+K G+  +  ++ +        R      +  +  A    + 
Sbjct: 20 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGA-----RGLHLSKMEALAGALGVPVT 74

Query: 71 Q 71
          +
Sbjct: 75 E 75


>gi|291540748|emb|CBL13859.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 121

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I    +   LT   LA ++GL   +    ++         P+ E++  ++     +
Sbjct: 9  LGKRIRSARKECQLTQQELADQSGLAVKTIQDIEKGRKN-----PTYETLCLLVDRLGIS 63

Query: 69 ICQLLD 74
             +  
Sbjct: 64 GNTIFP 69


>gi|241896164|ref|ZP_04783460.1| transcriptional regulator [Weissella paramesenteroides ATCC
          33313]
 gi|241870583|gb|EER74334.1| transcriptional regulator [Weissella paramesenteroides ATCC
          33313]
          Length = 140

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 1  MTS-FSHKKIWE---AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
          MT   S +KI E    I +  +   ++    A+K  +   + +  +          P  +
Sbjct: 1  MTLFLSKEKIMELSNKIKKRRKELGISQEEAAKKLYISRQTLSNWENDKT-----LPDID 55

Query: 57 SIFKILAATNETICQ 71
           +  I    + ++ +
Sbjct: 56 HLIDISNLYDLSLDE 70


>gi|239815433|ref|YP_002944343.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802010|gb|ACS19077.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 139

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/108 (9%), Positives = 27/108 (25%), Gaps = 6/108 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +    +   +T   +A + G++  + +  +     G        ++ K+   + +++  
Sbjct: 2   RLASARDGKGMTQDQVAERFGVNKATVSAWE--TGRGVPDALRLRALAKLYDVSADSL-- 57

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
                 S      K       L                  G     V 
Sbjct: 58  --LWEDSLSPDAMKFAAAFDGLNEQQKRQLFAMWEAYIREGASDAEVE 103


>gi|299823094|ref|ZP_07054979.1| XRE family transcriptional regulator [Listeria grayi DSM 20601]
 gi|307069497|ref|YP_003877975.1| transcriptional regulator [Listeria grayi]
 gi|299815503|gb|EFI82742.1| XRE family transcriptional regulator [Listeria grayi DSM 20601]
 gi|306480778|emb|CBV37319.1| transcriptional regulator [Listeria grayi]
          Length = 67

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K++  + ++ E  NL+   LA    +   + +  ++         PS E    I      
Sbjct: 2  KVFNVVKQLREDRNLSQKDLAEALEVSRQTIHAIEKGKYN-----PSLELSLCIAKYFET 56

Query: 68 TICQLLDLPFS 78
          +I  +  L   
Sbjct: 57 SIENIFYLEER 67


>gi|196250362|ref|ZP_03149055.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|196210251|gb|EDY05017.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 120

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/99 (10%), Positives = 32/99 (32%), Gaps = 5/99 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +  + I ++   +NL+    A+  G+   S ++ +    E      + + + K     N 
Sbjct: 5   QAGKLIRKLRRENNLSMIEFAKMVGISQPSLSRIENGNQE-----ITFQFLEKACETFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           ++     +     +  E   ++   +           + 
Sbjct: 60  SMSDFFRILEEKSKLQEIHLRKENNVNSEEELDTILANM 98


>gi|167463777|ref|ZP_02328866.1| prophage Lp1 protein 8 [Paenibacillus larvae subsp. larvae
          BRL-230010]
          Length = 123

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     +     +  M  ++  +    A+K GL  T+    +          P ++ + K
Sbjct: 1  MEMKYKEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNT-----PPSQILGK 55

Query: 61 ILAATNET 68
          I    N +
Sbjct: 56 IAEGFNTS 63


>gi|161523788|ref|YP_001578800.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|189351451|ref|YP_001947079.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|160341217|gb|ABX14303.1| transcriptional regulator, XRE family [Burkholderia multivorans
           ATCC 17616]
 gi|189335473|dbj|BAG44543.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
          Length = 227

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 46/171 (26%), Gaps = 6/171 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 35  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+   ++      S         P                  
Sbjct: 90  VAAFLRRHAVNGFEHLPAERASRVVSSNGRFSARALYPEGEPV-AAEFHELRIAPLHTEP 148

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           G+             + ++  +      L+      V   D+       GD
Sbjct: 149 GVRRAPGTTVNLVVSEGTLEVVVHDRRQLLATGDAIVFDADQPYSLRNPGD 199


>gi|28557093|dbj|BAC57552.1| immunity repressor protein [Clostridium sordellii]
          Length = 133

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 10/86 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + S       +  + +    T   +A+       + ++ +        R P +E++ +
Sbjct: 1  METLS-----TRLKELRKEKGYTLDQMAQDLNTTKVTLSRYENGT-----REPKSETLNQ 50

Query: 61 ILAATNETICQLLDLPFSDGRTTEKK 86
          +    N +I  L          T+ +
Sbjct: 51 LSDYFNVSIDYLFGKTDERNPKTKDE 76


>gi|86139328|ref|ZP_01057897.1| putative DNA-binding protein [Roseobacter sp. MED193]
 gi|85823831|gb|EAQ44037.1| putative DNA-binding protein [Roseobacter sp. MED193]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  + +    +   LA+ +G+   S ++ ++  +      P+ ES+ ++ AA   
Sbjct: 7  RLANRLATLRQDRGWSLDQLAQASGISRASLSRLEKGEV-----SPTAESLGQLCAAYAL 61

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
           + +LL              ++   
Sbjct: 62 PMSRLLMQVEDSHEQLVAASRQQVW 86


>gi|315574521|gb|EFU86712.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
          Length = 394

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFDQLESFNPD 64


>gi|310830260|ref|YP_003965360.1| probable transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
 gi|308753166|gb|ADO44309.1| probable transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
          Length = 89

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
           S K I   + +  +   L+ + LA KAGL   + +  +    + R
Sbjct: 12 RSPKDIGHVLRQARKAGGLSQADLAAKAGLWQRTVSTLETGAADAR 57


>gi|302527873|ref|ZP_07280215.1| DNA-binding protein [Streptomyces sp. AA4]
 gi|302436768|gb|EFL08584.1| DNA-binding protein [Streptomyces sp. AA4]
          Length = 226

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            I  ++ R   R  L+ + +AR+AGL  ++ ++ +          PS E+++ +
Sbjct: 50 DIIAASLRRERARAGLSLTEVARRAGLAKSTLSQLESGAGN-----PSVETLWAL 99


>gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SS3/4]
          Length = 116

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I ++ E  ++T   LA K  + P+S  + +           S  +I KI    N +
Sbjct: 13 IGQRIRKIREEKSMTQKKLAEKVMVSPSSITRLESGQT-----MVSVFTIIKIAEVLNTS 67


>gi|260906262|ref|ZP_05914584.1| transcriptional regulator, XRE family protein [Brevibacterium
          linens BL2]
          Length = 160

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I R  E   LT S LA ++G+  +  +  ++       R PS  ++  +L A    +   
Sbjct: 8  IRRAREDAGLTQSVLAERSGVAQSVISSYEKG-----RREPSASALDVLLTAAGFRLVVE 62

Query: 73 LDLPFSDGRTTEKKE 87
           +        T   E
Sbjct: 63 PEPDALHKVRTHSAE 77


>gi|257890009|ref|ZP_05669662.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,410]
 gi|260560174|ref|ZP_05832351.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
 gi|257826369|gb|EEV52995.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,410]
 gi|260073741|gb|EEW62066.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
          Length = 87

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  +   L+ + LA+K  +     +  +      + 
Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 60


>gi|229099134|ref|ZP_04230068.1| hypothetical protein bcere0020_43570 [Bacillus cereus Rock3-29]
 gi|228684362|gb|EEL38306.1| hypothetical protein bcere0020_43570 [Bacillus cereus Rock3-29]
          Length = 209

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 15/176 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I ++ +   L+    A   G+     ++ +     G N+ PS E + K+    + 
Sbjct: 5   ELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLE----TGSNKKPSIEILEKLALGLDL 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               L  L         +                    + +      +       +    
Sbjct: 61  HNNYLTYLAGYYKMPHIE-----YDENLTDEEKEEKIWAEIHKVDGGFTNNPFDILSPYP 115

Query: 128 NGIYAIQTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
               A Q  D ++K   T+ L   + +   +I++   +VN     +   +   +  
Sbjct: 116 QDPQAAQYNDDKNKLFKTATLACEHNQPFPIIVDKENKVN-----IEVYKENGLTL 166


>gi|260587242|ref|ZP_05853155.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
           hansenii DSM 20583]
 gi|260542437|gb|EEX23006.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
           hansenii DSM 20583]
          Length = 121

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           ++ ++     R  +    L ++ G    + +  +R         PS     KI    N T
Sbjct: 54  LYNSLKEYRARLGINQQELGKRVGASRQTISLIERGDY-----SPSVTLALKIAKECNAT 108

Query: 69  ICQLLDLPF 77
           + ++     
Sbjct: 109 VEEIFRYEE 117


>gi|221214075|ref|ZP_03587048.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD1]
 gi|221166252|gb|EED98725.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD1]
          Length = 205

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 40/159 (25%), Gaps = 22/159 (13%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA + G+  +  +  +R         P+   + K+ A  
Sbjct: 15  NERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAA-----SPTAVVLDKLAAGL 69

Query: 66  NETICQLLDLPFSDGR-TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
             ++  L             ++ ++          +        +P+  +   V  P   
Sbjct: 70  GISLAGLFGGDDGAPAQPLVRRAQQAEWRDPASGYARRNLSPPGWPSPLQLVEVDFPPGG 129

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI 163
                           +    +          + +    
Sbjct: 130 ----------------RVAYDTGAREIAWHQQIWVVRGR 152


>gi|219856265|ref|YP_002473387.1| hypothetical protein CKR_2922 [Clostridium kluyveri NBRC 12016]
 gi|219569989|dbj|BAH07973.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 108

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   + ++ + H ++ + LA    +   + NK ++   +     PS + + KI    + 
Sbjct: 7  DIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAK-----PSIDLLIKICEFFSI 61

Query: 68 TICQLLDLPFSDGRTTEKKE 87
          T+ +  +   +        +
Sbjct: 62 TLSEFFNNGNNSEPVILNPQ 81


>gi|160883371|ref|ZP_02064374.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483]
 gi|260172676|ref|ZP_05759088.1| hypothetical protein BacD2_12486 [Bacteroides sp. D2]
 gi|156111091|gb|EDO12836.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483]
          Length = 116

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I EAI R  E  NLT   L    G+     +K +    
Sbjct: 48 IGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS 85


>gi|153955923|ref|YP_001396688.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348781|gb|EDK35317.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 104

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   + ++ + H ++ + LA    +   + NK ++   +     PS + + KI    + 
Sbjct: 3  DIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAK-----PSIDLLIKICEFFSI 57

Query: 68 TICQLLDLPFSDGRTTEKKE 87
          T+ +  +   +        +
Sbjct: 58 TLSEFFNNGNNSEPVILNPQ 77


>gi|16330362|ref|NP_441090.1| SOS function regulatory protein [Synechocystis sp. PCC 6803]
 gi|1652852|dbj|BAA17770.1| SOS function regulatory protein [Synechocystis sp. PCC 6803]
          Length = 203

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 130 IYAIQTQDTRHKT-QDTSMLPLYRKGDILILNS---AIQVNCGDRLLIKPRTGDIVAKVL 185
               ++     +   +  +     +GD+LIL S     ++  G+ +    + G I  K  
Sbjct: 102 PLMKKSSVFALRVMSNDLVDDFIVEGDMLILRSVTGEEEIEDGELVAASIKGGKIAIKRY 161

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARI--LW 220
             + G  + L + N   P   ++ SD+E    +  +W
Sbjct: 162 Y-QDGTKVVLKASNNKGPGQELKASDVEIQGILMGVW 197


>gi|332880985|ref|ZP_08448655.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681159|gb|EGJ54086.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 117

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 6/107 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  ++ I E + ++ E    T   +A+  G++ ++++  +     G  R    + + K
Sbjct: 1   MKTI-NQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYE-----GGTREVPYDILEK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           +          L +               I  L          F   
Sbjct: 55  LSNLFGCEPFILFEDNVQADNEILATAFRISDLEDDDLKEIANFKDV 101


>gi|322383375|ref|ZP_08057160.1| transcriptional regulator-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321152334|gb|EFX45155.1| transcriptional regulator-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 230

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 39/168 (23%), Gaps = 5/168 (2%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              K++   I ++ E   LT   LA    + +  + +  +              ++  I 
Sbjct: 7   LEKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRST--PPSDVLRNLADIF 64

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVP 121
             + + +              + +   +  + +         D      G          
Sbjct: 65  NVSADYLLGRGGNDEFVTPPEDNQGGAVSEIGWAIKLERQSQDMTQKELGKQVGENQRQI 124

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
                        T D   +    S  P +     +   S      GD
Sbjct: 125 SSYELDLKPVPEHTLDKIMEVFGLSF-PEFLAKYNMWDESIHPHFDGD 171


>gi|309776993|ref|ZP_07671962.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915203|gb|EFP60974.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
          Length = 99

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           I E I    E  N+T S L  + GL   + +K            PS +++ KI +  
Sbjct: 3  NIGEIIQDNLEMKNMTQSELGERLGLSQKAISKYVTGKS-----LPSIDTLEKICSIL 55


>gi|302061586|ref|ZP_07253127.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. tomato K40]
          Length = 117

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 1  MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          M+   ++   +I E +    E   L+ + +A+  GL  T+    +    +
Sbjct: 3  MSETDNEERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARK 52


>gi|326319216|ref|YP_004236888.1| helix-turn-helix domain-containing protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|323376052|gb|ADX48321.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 92

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 20/46 (43%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          T  +  ++   +    ++  LT S +A + G+   +++  +R    
Sbjct: 5  TVRTADQLPALLQAFRKQSGLTQSDVALRLGVTQQTYSALERNAGN 50


>gi|269796526|ref|YP_003315981.1| hypothetical protein [Sanguibacter keddieii DSM 10542]
 gi|269098711|gb|ACZ23147.1| Helix-turn-helix protein [Sanguibacter keddieii DSM 10542]
          Length = 134

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +   A+     R  +TP  LA +A L   + N           RWP T S+ K
Sbjct: 1  MPREHEDRARAAVTTELRRRGITPRQLALRAQLSTGTVNDFLNGV-----RWPRTGSLGK 55

Query: 61 ILAATNETI 69
          I A      
Sbjct: 56 IEAFLGWPP 64


>gi|225856822|ref|YP_002738333.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031]
 gi|225725104|gb|ACO20956.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031]
          Length = 158

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHDLTQHDFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 117 DLSDLIHTNIYLVETFDE 134


>gi|221200113|ref|ZP_03573156.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD2M]
 gi|221206734|ref|ZP_03579746.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD2]
 gi|221211293|ref|ZP_03584272.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD1]
 gi|221168654|gb|EEE01122.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD1]
 gi|221173389|gb|EEE05824.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD2]
 gi|221180352|gb|EEE12756.1| transcriptional regulator, XRE family [Burkholderia multivorans
           CGD2M]
          Length = 227

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 46/171 (26%), Gaps = 6/171 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 35  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L     +G      E+   ++      S         P                  
Sbjct: 90  VAAFLRRHAVNGFEHLPAERASRVVSSNGRFSARALYPEGEPV-AAEFHELRIAPLHTEP 148

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           G+             + ++  +      L+      V   D+       GD
Sbjct: 149 GVRRAPGTTVNLVVSEGTLEVVVHDRRQLLATGDAIVFDADQPYSLRNPGD 199


>gi|213969499|ref|ZP_03397636.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
 gi|301382711|ref|ZP_07231129.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. tomato Max13]
 gi|302131409|ref|ZP_07257399.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. tomato NCPPB 1108]
 gi|213925870|gb|EEB59428.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
          Length = 115

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 1  MTSFSHK---KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          M+   ++   +I E +    E   L+ + +A+  GL  T+    +    +
Sbjct: 1  MSETDNEERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARK 50


>gi|29377033|ref|NP_816187.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|29344499|gb|AAO82257.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
          Length = 126

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + ++  +  +  S LA    L  +S +  +          P+ E+I KI    N +
Sbjct: 7  LKQLRTKKGIKQSELAEILHLRQSSISDYENNRST-----PNPETIKKIAEYFNVS 57


>gi|89893492|ref|YP_516979.1| hypothetical protein DSY0746 [Desulfitobacterium hafniense Y51]
 gi|89332940|dbj|BAE82535.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 134

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + +   L+   LA    +   + +K +         +P  + +  +    N ++ 
Sbjct: 8  EKLRVLRKEKGLSQEQLAEMVNVSRQAVSKWESEQA-----YPELDKLILLSDFFNISLD 62

Query: 71 Q 71
           
Sbjct: 63 D 63


>gi|313889792|ref|ZP_07823434.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
 gi|313121837|gb|EFR44934.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
             + ++ E  +LT   LA+K G+   +    +   
Sbjct: 1  MNRLKKLREESSLTQQELAKKIGVHYRTIQNWENGT 36


>gi|303241220|ref|ZP_07327727.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302591231|gb|EFL60972.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 71

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + K+   I +      +T   LA K  +   + +K +R         P    I K+  
Sbjct: 1  MQNDKVGNIIRKTRLEQKMTQKQLADKLDISDKAISKWERGSGN-----PDISLILKLSD 55

Query: 64 ATNETICQLLDLPFSD 79
               + +LL      
Sbjct: 56 ILGIDVRELLKAYEKP 71


>gi|302521750|ref|ZP_07274092.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302430645|gb|EFL02461.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 276

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + R+ +    T   LA + G+  +  +  +        R P T    K       T 
Sbjct: 18  GEHLRRLRDGRGWTQEELAARMGISASHVSAVETG------RRPPTPQFAKRADRELATG 71

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
            +L        RT+  +     + +   +     ++ GV P
Sbjct: 72  DELRRRSRVARRTSLLEGFPEYVDHELRASEIRVYEVGVVP 112


>gi|289769326|ref|ZP_06528704.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289699525|gb|EFD66954.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 198

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 8/134 (5%), Positives = 33/134 (24%), Gaps = 3/134 (2%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  +     +T + L+   G+  ++ ++ +               + +I     
Sbjct: 18  DAVGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLEL--LLPLARIYDVPL 75

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           + +                +   +  +       G      + P+         P+    
Sbjct: 76  DDLVGAPRTGDPRIHLKPVRRFGMVFVPLSRRPGGTQAFKMIIPSRPAPLE-PTPQTHEG 134

Query: 127 HNGIYAIQTQDTRH 140
              +Y +  +    
Sbjct: 135 SEWLYVLSGRLRLL 148


>gi|317053889|ref|YP_004117914.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
 gi|316951884|gb|ADU71358.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I   + R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N
Sbjct: 6  DIIAAGLVRERQRAGLSLTEVARRAGVAKSTLSQLEAGNGN-----PSIETLWSLCVALN 60

Query: 67 ETI 69
             
Sbjct: 61 IPF 63


>gi|229192878|ref|ZP_04319836.1| hypothetical protein bcere0002_45290 [Bacillus cereus ATCC 10876]
 gi|228590717|gb|EEK48578.1| hypothetical protein bcere0002_45290 [Bacillus cereus ATCC 10876]
          Length = 209

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E I ++ +   L+    A   G+     ++ +     G N+ PS E + K+    + 
Sbjct: 5  ELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLE----TGSNKKPSIEILEKLALGLDI 60

Query: 68 TICQLLDLPFSDGRT 82
              L  L       
Sbjct: 61 HNNYLTYLAGYYKMP 75


>gi|255533832|ref|YP_003094204.1| helix-turn-helix domain-containing protein [Pedobacter heparinus
           DSM 2366]
 gi|255346816|gb|ACU06142.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366]
          Length = 113

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/112 (9%), Positives = 35/112 (31%), Gaps = 7/112 (6%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I + I R  ++   +   +A +  +   +F+K +    +      + + + +I     
Sbjct: 2   NTISKNIKRFRQKKGWSQREVAEQLNISIPAFSKIENGITD-----INLKRLGQIATLLE 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +I  L+     + ++       + +L    +                +  V
Sbjct: 57  ASIMDLMATDGENPQSKHS--MHVNMLKIKLAKKEEEVIDLQRRVIELYEEV 106


>gi|297587580|ref|ZP_06946224.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
 gi|297574269|gb|EFH92989.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
          Length = 327

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I  + +++NLT   LA K G+   S +K +          P    I ++     
Sbjct: 7  IILLRKKNNLTQEELAEKLGVSRQSVSKWEMGNSI-----PDINKIIQLSDVFG 55


>gi|161505447|ref|YP_001572559.1| hypothetical protein SARI_03605 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866794|gb|ABX23417.1| hypothetical protein SARI_03605 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 204

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I  ++ R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A 
Sbjct: 30 IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVAL 81


>gi|156935962|ref|YP_001439878.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534216|gb|ABU79042.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC BAA-894]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 47/133 (35%), Gaps = 5/133 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I +++ R   R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A +  
Sbjct: 8   IAQSLVRERTRAGLSLAEVARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVALDIP 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
             +L++   +  +   + E    +       +            + +  +  PE      
Sbjct: 63  FARLMEPQANQTQVIRRGEGPKVVAELANYQAILLATCPPGARRDIYLLLTQPEGERLSQ 122

Query: 129 GIYAIQTQDTRHK 141
              A   +     
Sbjct: 123 PHPAGSVEHIIVT 135


>gi|68537028|ref|YP_251733.1| putative transcriptional regulator RamB [Corynebacterium jeikeium
           K411]
 gi|260579374|ref|ZP_05847256.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734]
 gi|68264627|emb|CAI38115.1| putative transcriptional regulator RamB [Corynebacterium jeikeium
           K411]
 gi|258602503|gb|EEW15798.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734]
          Length = 501

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 35/125 (28%), Gaps = 5/125 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++ +   ++ + LA    L  +  N+ +  G     R  +   + +I AA    
Sbjct: 22  VGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDG-----RPLTAAVLERITAAFGVD 76

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                D   +      +     P +   P+                   V +       +
Sbjct: 77  PTFFADQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHPDLARAFVDLHSRYRNVS 136

Query: 129 GIYAI 133
              ++
Sbjct: 137 DTLSL 141


>gi|86137418|ref|ZP_01055995.1| DNA-binding protein, putative [Roseobacter sp. MED193]
 gi|85825753|gb|EAQ45951.1| DNA-binding protein, putative [Roseobacter sp. MED193]
          Length = 133

 Score = 43.2 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           + +    E  ++T + LAR+ G+  T+    ++   E R    S 
Sbjct: 17 GDRVAAAREAADMTQAQLARRLGVKKTTLMGWEQDLSEPRANKLSM 62


>gi|154174961|ref|YP_001408728.1| DNA polymerase III delta prime subunit [Campylobacter curvus
          525.92]
 gi|112802141|gb|EAT99485.1| DNA polymerase III delta prime subunit [Campylobacter curvus
          525.92]
          Length = 90

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 7  KKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          +  ++AI+ +        LT S +A++ G+  ++  + +      +
Sbjct: 27 EDEYKAIEALIDARNEAGLTQSEVAKRMGITQSAVARIESGAYNIK 72


>gi|332969767|gb|EGK08779.1| signal peptidase I LepB [Desmospora sp. 8437]
          Length = 154

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 18/100 (18%)

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV-AKVLISR 188
            +   +    ++    SM P    G++  ++    +  GD +  +     +   K +I+ 
Sbjct: 20  YFVFDSFYAYYRVNGDSMAPALHDGEVYRVSKRESIQRGDVIAFRSDQESLTYIKRVIAL 79

Query: 189 RGRSIDLM-------------SLNCCYPVDTVEMSDIEWI 215
            G  + +                   +P       D+E I
Sbjct: 80  PGERVAIRGNHVYINDRKLAEPYLPNHPDIK----DVETI 115


>gi|291518470|emb|CBK73691.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4]
          Length = 115

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I  + +   ++ +   + AG+ P++ +  K      +   PS + I  I      T
Sbjct: 3  ITERIFYLIKARGMSQNSFGKAAGIAPSTISDWK-----TKGHTPSADKIMDICRVLEVT 57

Query: 69 I 69
           
Sbjct: 58 P 58


>gi|270292535|ref|ZP_06198746.1| conserved domain protein [Streptococcus sp. M143]
 gi|322388126|ref|ZP_08061731.1| transcriptional regulator [Streptococcus infantis ATCC 700779]
 gi|270278514|gb|EFA24360.1| conserved domain protein [Streptococcus sp. M143]
 gi|321141033|gb|EFX36533.1| transcriptional regulator [Streptococcus infantis ATCC 700779]
          Length = 74

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA   G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESTGMTQQELADLIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|260911956|ref|ZP_05918520.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon
          472 str. F0295]
 gi|260633903|gb|EEX52029.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon
          472 str. F0295]
          Length = 71

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++I + I  M +   L+ + L +K GL+    ++ +             +++  I  A 
Sbjct: 10 RERIGQKIASMRQEAKLSQAELGKKCGLERFHISRIESG-----RHSVGLDTLAAIARAL 64

Query: 66 NET 68
           +T
Sbjct: 65 GKT 67


>gi|240139328|ref|YP_002963803.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
 gi|240009300|gb|ACS40526.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
          Length = 198

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  +    +L+   LA  AG+     +K +   I      PS  SI  I +A N  I  L
Sbjct: 24 IRMLRRERDLSVGDLAAAAGISQGMISKIENGTI-----SPSLASINAIASALNVPITGL 78

Query: 73 LDLPFSDGRTTE 84
                    + 
Sbjct: 79 FTAFEETRDCSH 90


>gi|225573541|ref|ZP_03782296.1| hypothetical protein RUMHYD_01734 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039099|gb|EEG49345.1| hypothetical protein RUMHYD_01734 [Blautia hydrogenotrophica DSM
          10507]
          Length = 277

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          R+     L P+ + R+ G++ T F++ K+   +     P+TE + KI    N +
Sbjct: 7  RLLAERGLKPADITRETGINSTVFSEWKKGKSK-----PNTEKLIKIAKFLNVS 55


>gi|187479415|ref|YP_787440.1| transcriptional regulator [Bordetella avium 197N]
 gi|115424002|emb|CAJ50555.1| putative transcriptional regulator [Bordetella avium 197N]
          Length = 111

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + +         T   LA  +GL P++    +     G+    S  ++ K+      +  
Sbjct: 6  DRLRTARNTRGWTQKELAELSGLTPSAIGNYE----SGQRAQASASAMLKLAEVLGVSPG 61

Query: 71 Q 71
           
Sbjct: 62 W 62


>gi|167039360|ref|YP_001662345.1| XRE family transcriptional regulator [Thermoanaerobacter sp.
          X514]
 gi|300913999|ref|ZP_07131316.1| transcriptional regulator, XRE family [Thermoanaerobacter sp.
          X561]
 gi|307725316|ref|YP_003905067.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          sp. X513]
 gi|166853600|gb|ABY92009.1| transcriptional regulator, XRE family [Thermoanaerobacter sp.
          X514]
 gi|300890684|gb|EFK85829.1| transcriptional regulator, XRE family [Thermoanaerobacter sp.
          X561]
 gi|307582377|gb|ADN55776.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513]
          Length = 137

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + ++ E   L    +A+  G+ P+++   ++       R PS E + K+    N +
Sbjct: 12 QRLRQLREEKGLLQKDVAKILGITPSAYGYYEQG-----KREPSMEVLKKLSDFFNVS 64


>gi|110597669|ref|ZP_01385954.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031]
 gi|110340789|gb|EAT59266.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031]
          Length = 109

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +R  LT   +A K G   ++ ++ +  G       PS  ++ K   A    
Sbjct: 46 ARQRSGLTQEAIASKIGTTKSAISRLESGG----KHIPSITTLRKYAEALGCE 94


>gi|194467261|ref|ZP_03073248.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
 gi|194454297|gb|EDX43194.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
          Length = 74

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE---SIFKILAATN 66
             + +  +   L+   LA+K G+   + N  +          PS E   ++ K L    
Sbjct: 1  MNRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYN-----PSLELCINLAKALNTDL 55

Query: 67 ETICQLLDLPFSDGRTTE 84
           ++         + +   
Sbjct: 56 NSLFWEERKNERNNQHQN 73


>gi|551457|gb|AAB46931.1| orf1 [Methylobacterium extorquens AM1]
          Length = 139

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  +    +L+   LA  AG+     +K +   I      PS  SI  I +A N  I  L
Sbjct: 24 IRMLRRERDLSVGDLAAAAGISQGMISKIENGTI-----SPSLASINAIASALNVPITGL 78

Query: 73 LDLPFSDGRTTE 84
                    + 
Sbjct: 79 FTAFEETRDCSH 90


>gi|15607165|ref|NP_214537.1| transcriptional regulatory protein [Mycobacterium tuberculosis
           H37Rv]
 gi|15839397|ref|NP_334434.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|31791200|ref|NP_853693.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|121635933|ref|YP_976156.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148659783|ref|YP_001281306.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148821214|ref|YP_001285968.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167968155|ref|ZP_02550432.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215406012|ref|ZP_03418193.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|215413880|ref|ZP_03422545.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215425216|ref|ZP_03423135.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|215432933|ref|ZP_03430852.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|215448297|ref|ZP_03435049.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|219555803|ref|ZP_03534879.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|224988406|ref|YP_002643073.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253796938|ref|YP_003029939.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254233427|ref|ZP_04926753.1| hypothetical protein TBCG_00023 [Mycobacterium tuberculosis C]
 gi|254548955|ref|ZP_05139402.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260199017|ref|ZP_05766508.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|260203164|ref|ZP_05770655.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289441390|ref|ZP_06431134.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289552273|ref|ZP_06441483.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289567908|ref|ZP_06448135.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289572599|ref|ZP_06452826.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289747793|ref|ZP_06507171.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis 02_1987]
 gi|289748486|ref|ZP_06507864.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289756082|ref|ZP_06515460.1| transcriptional regulatory protein [Mycobacterium tuberculosis
           EAS054]
 gi|289760120|ref|ZP_06519498.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|294995636|ref|ZP_06801327.1| transcriptional regulatory protein [Mycobacterium tuberculosis 210]
 gi|297632494|ref|ZP_06950274.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN
           4207]
 gi|297729465|ref|ZP_06958583.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN
           R506]
 gi|298527421|ref|ZP_07014830.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306778315|ref|ZP_07416652.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306778844|ref|ZP_07417181.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306782634|ref|ZP_07420956.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306787000|ref|ZP_07425322.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306791558|ref|ZP_07429860.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306795621|ref|ZP_07433923.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306801597|ref|ZP_07438265.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306805804|ref|ZP_07442472.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306970202|ref|ZP_07482863.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|306974435|ref|ZP_07487096.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307082143|ref|ZP_07491313.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307082483|ref|ZP_07491596.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|313656794|ref|ZP_07813674.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039886|sp|P67705|Y023_MYCBO RecName: Full=Uncharacterized HTH-type transcriptional regulator
           Mb0023
 gi|54042795|sp|P67704|Y023_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator
           Rv0023/MT0026
 gi|1552578|emb|CAB02443.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13879067|gb|AAK44248.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|31616785|emb|CAD92885.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
           AF2122/97]
 gi|121491580|emb|CAL70037.1| Possible transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124603220|gb|EAY61495.1| hypothetical protein TBCG_00023 [Mycobacterium tuberculosis C]
 gi|148503935|gb|ABQ71744.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148719741|gb|ABR04366.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|224771519|dbj|BAH24325.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253318441|gb|ACT23044.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289414309|gb|EFD11549.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289436905|gb|EFD19398.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289537030|gb|EFD41608.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289541661|gb|EFD45310.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289688321|gb|EFD55809.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis 02_1987]
 gi|289689073|gb|EFD56502.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289696669|gb|EFD64098.1| transcriptional regulatory protein [Mycobacterium tuberculosis
           EAS054]
 gi|289715684|gb|EFD79696.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|298497215|gb|EFI32509.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308213460|gb|EFO72859.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308328177|gb|EFP17028.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308332482|gb|EFP21333.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308336294|gb|EFP25145.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308339898|gb|EFP28749.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308343913|gb|EFP32764.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308347697|gb|EFP36548.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308351614|gb|EFP40465.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308352321|gb|EFP41172.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308356221|gb|EFP45072.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308360211|gb|EFP49062.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308367773|gb|EFP56624.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323717362|gb|EGB26567.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326905784|gb|EGE52717.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328456729|gb|AEB02152.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 256

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/185 (9%), Positives = 42/185 (22%), Gaps = 12/185 (6%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S +    AI  + E  + + + LA   G+     +  +R       R P   ++ K+  
Sbjct: 1   MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGA-----RKPHKSTVQKVEN 55

Query: 64  ATNETICQLLDLPFSDGRTTE------KKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
                      L  +     E       +      +    +             G     
Sbjct: 56  GLGLPPGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQ 115

Query: 118 VGVP-EIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPR 176
           +     +        + + +          +           +      +   RL+   R
Sbjct: 116 LDAIKSVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLR 175

Query: 177 TGDIV 181
             +  
Sbjct: 176 ALEAT 180


>gi|329910926|ref|ZP_08275406.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546048|gb|EGF31123.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 191

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 42/140 (30%), Gaps = 18/140 (12%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++   + RM    +LT   L+R AG+  +  ++ +R         P+    +++  A
Sbjct: 9   TPPEVGATLQRMRLERDLTLEDLSRAAGVSKSMLSQIEREKAN-----PTIAVAWRLANA 63

Query: 65  TNETICQ-------------LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
              +I +             +++   +           + +L          +       
Sbjct: 64  LGVSIAELLSTEARPLEAIRVMEPHETPTLPGGHAGYVLRILGPMALAGKHEWYELTLSA 123

Query: 112 GNKWNTVGVPEIRSPHNGIY 131
           G    +       + H  + 
Sbjct: 124 GGALVSNPHDPGTTEHLTVL 143


>gi|330818256|ref|YP_004361961.1| DNA-binding protein [Burkholderia gladioli BSR3]
 gi|327370649|gb|AEA62005.1| DNA-binding protein [Burkholderia gladioli BSR3]
          Length = 226

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 6/171 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + R+     L+   LAR +G+      + +          PS + + K+ AA   +
Sbjct: 39  VGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSV-----PSIKVLCKVAAALKVS 93

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +   L      G      E+ + ++      S         P   +++ + +  + +   
Sbjct: 94  VAAFLRRHAVLGFEHLPAERAVRVVASNGRFSSRALYPEGEPATAEFHELRIAPLHTETG 153

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
              A           + ++         L+      V   D+       GD
Sbjct: 154 VRRA-PGTTINLVVSEGTLELSVHDRRQLLATGDAIVFDADQPYTLRNPGD 203


>gi|325264148|ref|ZP_08130880.1| putative transcriptional regulator, XRE family with cupin sensor
          domain protein [Clostridium sp. D5]
 gi|324030632|gb|EGB91915.1| putative transcriptional regulator, XRE family with cupin sensor
          domain protein [Clostridium sp. D5]
          Length = 189

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 13/101 (12%)

Query: 1  MTSFSHKKIWE--------AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          M    +++I E         I  + +  ++T   L ++ GL     +  +R         
Sbjct: 1  MAELFNERIGEEQNDDVGGKIRALRKEKDITLKQLGKETGLSIGYLSNLERDAC-----S 55

Query: 53 PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
          P+ +++ KI      ++ +LLD      R   K+E+++   
Sbjct: 56 PTLDNLQKICGVLEISLIELLDGMNQGRRVIRKEERKVVFE 96


>gi|323351737|ref|ZP_08087391.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|322122223|gb|EFX93949.1| transcriptional regulator [Streptococcus sanguinis VMC66]
          Length = 136

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I + I  + +R N++   LA + G+   +  K +      
Sbjct: 2  ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVP 41


>gi|322385349|ref|ZP_08058994.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
 gi|321270608|gb|EFX53523.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
          Length = 158

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2  IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69 ICQLLDLPFSDGRTT 83
             ++          
Sbjct: 57 YVDIVGEDKMLNPVE 71


>gi|300971958|ref|ZP_07171746.1| peptidase S24-like domain protein [Escherichia coli MS 45-1]
 gi|300411083|gb|EFJ94621.1| peptidase S24-like domain protein [Escherichia coli MS 45-1]
          Length = 109

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIK 174
           + V   +    +  +    +     K    SM+      GD+LI++SAI  + GD ++  
Sbjct: 32  DYVE--QRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAA 89

Query: 175 PRTGDIVAK 183
              G+   K
Sbjct: 90  VD-GEFTVK 97


>gi|260663675|ref|ZP_05864564.1| prophage LambdaSa03 [Lactobacillus fermentum 28-3-CHN]
 gi|260551901|gb|EEX25016.1| prophage LambdaSa03 [Lactobacillus fermentum 28-3-CHN]
          Length = 111

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S+ +I   + ++     LT S +AR+ G+  ++ ++        ++R      +    
Sbjct: 1  MRSNDEIIRYLTQLKNEQQLTISEIARRTGMAKSAISRYFN-----KSREFPVNKVDDFA 55

Query: 63 AATNETICQ 71
             N T  +
Sbjct: 56 KVFNVTPEE 64


>gi|259506603|ref|ZP_05749505.1| transcriptional regulator [Corynebacterium efficiens YS-314]
 gi|259165801|gb|EEW50355.1| transcriptional regulator [Corynebacterium efficiens YS-314]
          Length = 138

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 1/116 (0%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEGRNRWPSTESIFKILAATNE 67
           +   +  + +    +   LA    +   + +  +R     G+   P   +++K+  A + 
Sbjct: 23  LGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDV 82

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
               LL       +     E     + +P       FD  + P  +       P  
Sbjct: 83  PPAALLPAVGEKPQGICVDESLPVDVRWPAPRDEVLFDVPLTPPEHPRRADRQPPR 138


>gi|228477808|ref|ZP_04062436.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius
           SK126]
 gi|322374168|ref|ZP_08048701.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. C150]
 gi|228250500|gb|EEK09714.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius
           SK126]
 gi|321276873|gb|EFX53945.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. C150]
          Length = 150

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            F++    + +  + +   LT   ++    +   ++++ +   +E     PS E++ K+ 
Sbjct: 1   MFNNNSFGDRLKELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLE-----PSLEAVVKLA 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
              + T   LL                   L      +    D   F  
Sbjct: 56  KLFDTTTDYLLGKTIYSTLDVVPHPITRIDLKKLKGFNKTELDDLKFAI 104


>gi|255656468|ref|ZP_05401877.1| transcriptional regulator, XRE family protein [Clostridium
          difficile QCD-23m63]
          Length = 65

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          ++ + ++  L     A+   +   + +  +          PS E  F+I      +I ++
Sbjct: 5  VEALRKKKGLNQEDFAKILKVSRQTISSIENGKYN-----PSLELAFQISDFFEMSIEEI 59

Query: 73 LDLPF 77
               
Sbjct: 60 FLWKE 64


>gi|158425505|ref|YP_001526797.1| putative HTH-type transcriptional regulator [Azorhizobium
          caulinodans ORS 571]
 gi|158332394|dbj|BAF89879.1| putative HTH-type transcriptional regulator [Azorhizobium
          caulinodans ORS 571]
          Length = 72

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K +     R+ +   LT   +  ++G      +  +R       R P+  ++++
Sbjct: 1  MDM--RKLVGRNFARLRQEKGLTQEDVQTRSGFSQQYISGLERG-----RRNPTVITLYE 53

Query: 61 ILAATNETICQ 71
          +  A   +  +
Sbjct: 54 LAQALGVSHEE 64


>gi|148554493|ref|YP_001262075.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499683|gb|ABQ67937.1| transcriptional regulator, XRE family [Sphingomonas wittichii
          RW1]
          Length = 57

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           R+ E    +    A +AG+  T  +  +R       R P+ + + K+ A       Q
Sbjct: 2  RRLREEKGWSQEAYADEAGIHRTYISDIERGA-----RNPTVKVVEKLAAPFGVPAGQ 54


>gi|89896521|ref|YP_520008.1| hypothetical protein DSY3775 [Desulfitobacterium hafniense Y51]
 gi|89335969|dbj|BAE85564.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 63

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I +  +  N++   LA++  +   + N  +    +     P+    FK+      T+ 
Sbjct: 3  NNIKQHRKEKNISQEDLAKRCNVSRQTINAIENNKYD-----PTLSLAFKLAEVLQVTVD 57

Query: 71 QLLD 74
          +L +
Sbjct: 58 ELFN 61


>gi|120597109|ref|YP_961683.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557202|gb|ABM23129.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1]
          Length = 188

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  +   +    A++ G+      + +R         P+  +++KI +  N +
Sbjct: 8   LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +   L+       T  +K  E+                  F     +    +
Sbjct: 63  LSTFLEPTPQSQGTVFRKPDELRQQPATDGMLVASLFP--FEERFGFEMFEL 112


>gi|319650130|ref|ZP_08004279.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2]
 gi|317398311|gb|EFV79000.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2]
          Length = 183

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 53/197 (26%), Gaps = 37/197 (18%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K I E +  + +    +    A   G+      + +R         P+  +++KI +  
Sbjct: 5   QKSIGENLRNIRKTRGYSLDAAAEITGVSKAMLGQIERGESN-----PTVTTLWKIASGL 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +                                       +   G+       P    
Sbjct: 60  QVSF----------------SSLIHEEPSDVQLIELKTLTPIMESMGDYRVYPVFPFDPR 103

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
               I+ ++ +     T D     +  +  I +++  +++  GD+              +
Sbjct: 104 KKFEIFTVEIESGCQHTSDKHNEGV--EEYITVMSGTLEIEIGDQ-------------RI 148

Query: 186 ISRRGRSIDLMSLNCCY 202
             R G SI   S N  +
Sbjct: 149 TVRSGNSIKF-SANKAH 164


>gi|315925909|ref|ZP_07922114.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620730|gb|EFV00706.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 188

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  + +   L+   LA K  +   + +K +R         P +E +  I       
Sbjct: 23 ENIKTIRKSKGLSQDELAVKLNVVRQTVSKWERGLSV-----PDSEMLISISEVLETP 75


>gi|315445351|ref|YP_004078230.1| transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|315263654|gb|ADU00396.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1]
          Length = 150

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 4/111 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT     K+   +       +L+ + +AR+A +DP +  + ++    G+ R    ES+  
Sbjct: 1   MTPDQTVKLINLLKARRSELHLSVNEVARRADVDPGTAWRIEQGQ-IGKPRA---ESLIA 56

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           I +    +   L                      +P               
Sbjct: 57  IGSVLGISAMDLFATVGWLTADELPSLGAYLDAKYPNLPEPVSKHIEHHVE 107


>gi|298369856|ref|ZP_06981172.1| hypothetical protein HMPREF9016_01190 [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281316|gb|EFI22805.1| hypothetical protein HMPREF9016_01190 [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 153

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
            +  +   T S LA  AGL     ++ +        +    E++ K+  A   +  ++  
Sbjct: 87  SLRMKKGFTQSELAAAAGLRQPYLSRIEN-----SKQSLHNETVQKLANALGVSPLEVRA 141

Query: 75  LPFSDGRTT 83
                    
Sbjct: 142 AFEQQYEYM 150


>gi|284045004|ref|YP_003395344.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949225|gb|ADB51969.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 196

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   +  + E  +L+   LA ++G+     ++ +R         P+ +   +I    
Sbjct: 12 IGSRVRALREAMDLSLRDLAERSGVSAPMLSQVERGET-----SPTLQVATRIAHGL 63


>gi|312194196|ref|YP_004014257.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311225532|gb|ADP78387.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 304

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 17/43 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          ++  A+  + +R  +T   L R  G      +K +R  +    
Sbjct: 29 ELGRALAGLRKRKGMTGEELGRAIGASQAKISKIERGALRPSP 71


>gi|255066370|ref|ZP_05318225.1| putative helix-turn-helix protein [Neisseria sicca ATCC 29256]
 gi|255049250|gb|EET44714.1| putative helix-turn-helix protein [Neisseria sicca ATCC 29256]
          Length = 153

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
            +  +   T S LA  AGL     ++ +        +    E++ K+  A   +  ++  
Sbjct: 87  SLRMKKGFTQSELAAAAGLRQPYLSRIEN-----SKQSLHNETVQKLANALGVSPLEVRA 141

Query: 75  LPFSDGRTT 83
                    
Sbjct: 142 AFEQQYEYM 150


>gi|228944436|ref|ZP_04106809.1| hypothetical protein bthur0007_6100 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229089747|ref|ZP_04221007.1| hypothetical protein bcere0021_5900 [Bacillus cereus Rock3-42]
 gi|229171467|ref|ZP_04299051.1| hypothetical protein bcere0006_5940 [Bacillus cereus MM3]
 gi|301052335|ref|YP_003790546.1| transcriptional regulator [Bacillus anthracis CI]
 gi|228612005|gb|EEK69243.1| hypothetical protein bcere0006_5940 [Bacillus cereus MM3]
 gi|228693555|gb|EEL47258.1| hypothetical protein bcere0021_5900 [Bacillus cereus Rock3-42]
 gi|228815338|gb|EEM61586.1| hypothetical protein bthur0007_6100 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|300374504|gb|ADK03408.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
          CI]
          Length = 72

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38


>gi|258510478|ref|YP_003183912.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477204|gb|ACV57523.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 163

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++     L+   LA +  +        ++       R P  E++ K+    + +
Sbjct: 6  GERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGT-----REPDIETLKKLADFFDVS 59


>gi|296137789|ref|YP_003645032.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296025923|gb|ADG76693.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 377

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   + E I     R  ++   LA +     +   K +      R+  P    + ++  
Sbjct: 1  MTVDTLGERIKAWRLRRGMSQQDLADRMSRSKSWIQKLE---GSERHSDPRLSVLREVSE 57

Query: 64 ATN 66
          A  
Sbjct: 58 ALG 60


>gi|197106394|ref|YP_002131771.1| transcriptional regulator,Cro/CI family [Phenylobacterium
          zucineum HLK1]
 gi|196479814|gb|ACG79342.1| transcriptional regulator,Cro/CI family [Phenylobacterium
          zucineum HLK1]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +    + +   LA + G+   S N  +    +     PS    F+I     
Sbjct: 24 NRLKVLRAERDWSQGDLAERLGVSRQSVNAIETGKYD-----PSLPLAFRIARVFG 74


>gi|183600925|ref|ZP_02962418.1| hypothetical protein PROSTU_04537 [Providencia stuartii ATCC 25827]
 gi|188019254|gb|EDU57294.1| hypothetical protein PROSTU_04537 [Providencia stuartii ATCC 25827]
          Length = 299

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 8/149 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + +  + ++  ++    A   G+  T+ NK  +    G     + E + ++L      +
Sbjct: 8   GQRLLALLKQQKMSQLKAAEALGVSRTAVNKWTKG---GMIDENNLEKLAQLLNVDKIWL 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                   +   +     + I  ++   S            TG     +   +      G
Sbjct: 65  KYGEYTNHASTASHPAIVRNINEVHLQESTE-IVTWEWDLLTG----ELNYSDNVEDVYG 119

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
           I      D        S   L      +I
Sbjct: 120 IKITTNDDFWALMNQESKDKLVNGYSKII 148


>gi|196047089|ref|ZP_03114307.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225862662|ref|YP_002748040.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|196022070|gb|EDX60759.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225786476|gb|ACO26693.1| DNA-binding protein [Bacillus cereus 03BB102]
          Length = 72

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38


>gi|196035723|ref|ZP_03103126.1| DNA-binding protein [Bacillus cereus W]
 gi|195991690|gb|EDX55655.1| DNA-binding protein [Bacillus cereus W]
          Length = 72

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38


>gi|196042052|ref|ZP_03109337.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218901880|ref|YP_002449714.1| DNA-binding protein [Bacillus cereus AH820]
 gi|196027077|gb|EDX65699.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218538431|gb|ACK90829.1| DNA-binding protein [Bacillus cereus AH820]
          Length = 72

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38


>gi|206977796|ref|ZP_03238686.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217958270|ref|YP_002336816.1| DNA-binding protein [Bacillus cereus AH187]
 gi|229195008|ref|ZP_04321785.1| hypothetical protein bcere0001_5850 [Bacillus cereus m1293]
 gi|206743993|gb|EDZ55410.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217063059|gb|ACJ77309.1| DNA-binding protein [Bacillus cereus AH187]
 gi|228588443|gb|EEK46484.1| hypothetical protein bcere0001_5850 [Bacillus cereus m1293]
 gi|324324726|gb|ADY19986.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 72

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38


>gi|94264958|ref|ZP_01288729.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|94265765|ref|ZP_01289500.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93453700|gb|EAT04081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93454561|gb|EAT04839.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
          Length = 101

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            I + +    +   LT   L  K GL  +  ++ +   ++   R  S   + + L 
Sbjct: 3  DDIVKKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDM--RLSSFLEMARFLD 57


>gi|30260836|ref|NP_843213.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47777843|ref|YP_017315.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|165872709|ref|ZP_02217338.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167635142|ref|ZP_02393458.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167640908|ref|ZP_02399166.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170689675|ref|ZP_02880854.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170709381|ref|ZP_02899793.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177652779|ref|ZP_02935152.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190568519|ref|ZP_03021425.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227816443|ref|YP_002816452.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228963784|ref|ZP_04124925.1| hypothetical protein bthur0004_6520 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|229602026|ref|YP_002865281.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254684237|ref|ZP_05148097.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725898|ref|ZP_05187680.1| transcriptional regulator [Bacillus anthracis str. A1055]
 gi|254734400|ref|ZP_05192113.1| transcriptional regulator [Bacillus anthracis str. Western North
          America USA6153]
 gi|254742086|ref|ZP_05199773.1| transcriptional regulator [Bacillus anthracis str. Kruger B]
 gi|254754927|ref|ZP_05206961.1| transcriptional regulator [Bacillus anthracis str. Vollum]
 gi|254762342|ref|ZP_05214186.1| transcriptional regulator [Bacillus anthracis str. Australia 94]
 gi|30254285|gb|AAP24699.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47551548|gb|AAT29790.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|164711570|gb|EDR17118.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167511128|gb|EDR86516.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167529401|gb|EDR92152.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170125702|gb|EDS94617.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170666376|gb|EDT17160.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172081813|gb|EDT66882.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190560313|gb|EDV14292.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227002503|gb|ACP12246.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228795929|gb|EEM43396.1| hypothetical protein bthur0004_6520 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|229266434|gb|ACQ48071.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 72

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKG 38


>gi|54023278|ref|YP_117520.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54014786|dbj|BAD56156.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 187

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/176 (9%), Positives = 46/176 (26%), Gaps = 20/176 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I  ++ R   R  L+ S +A +AG+  ++ ++ +          PS E+++ +  A    
Sbjct: 13  IAASLRRERTRAGLSLSEVAARAGIAKSTLSQLESGSGN-----PSLETLWALCVAL--- 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
               +                        +     + + +   G       +  I +   
Sbjct: 65  ---DMPFSRLLDPPRPVVHVIRAGEGPAVAAERSDYHATLLAAGPSNTRRDLFRITAEPG 121

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN---CGDRLLIKPRTGDIV 181
                Q            +  +       ++    +      GD +        + 
Sbjct: 122 QPRESQPHIPGV------IEHILLAAGRALVGPTGEPVELAPGDYIAYPGDAPHVF 171


>gi|89097987|ref|ZP_01170873.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911]
 gi|89087150|gb|EAR66265.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911]
          Length = 187

 Score = 43.2 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          HK I E +  +     L+    A   G+      + +R         P+  +++KI +  
Sbjct: 9  HKNIGENLRNIRRSRGLSLDMAAEATGVSKAMLGQIERGESN-----PTVTTLWKIASGL 63

Query: 66 NETI 69
            + 
Sbjct: 64 QISF 67


>gi|332361883|gb|EGJ39686.1| transcriptional regulator [Streptococcus sanguinis SK355]
          Length = 136

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I + I  + +R N++   LA + G+   +  K +      
Sbjct: 2  ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVP 41


>gi|325979177|ref|YP_004288893.1| DNA-binding protein [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
 gi|325179105|emb|CBZ49149.1| DNA-binding protein [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
          Length = 69

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++ + I +      ++ S L+++ G+   + +K +    E    + S  S+ ++  
Sbjct: 7  QLSKNIKKYRLMKKMSQSDLSKRIGVSHQAISKWE--TGENYPDFMSLISLAQLFE 60


>gi|323975381|gb|EGB70482.1| helix-turn-helix protein [Escherichia coli TW10509]
          Length = 154

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +  E +  +     L+    A + G   +  ++ +R G        S ++I  
Sbjct: 1  MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55

Query: 61 ILAATNETICQ 71
          +  A +    Q
Sbjct: 56 LANALSVEPWQ 66


>gi|302530038|ref|ZP_07282380.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302438933|gb|EFL10749.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 172

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E +    +  +L+   LA +AG    + +  +R       + P+ +++ ++LA    T
Sbjct: 3  IAELLTTARKAADLSQQELAERAGTSRPTLSAYERG-----RKSPTLDTVTRLLAGAGFT 57


>gi|299069355|emb|CBJ40621.1| putative transcriptional regulator [Ralstonia solanacearum CMR15]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          A+  + +R  L+   L+R+AG+  +  ++ +R         P+   ++++  A   ++  
Sbjct: 4  ALQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTN-----PTVAVLWRLANALGVSLTD 58

Query: 72 L 72
           
Sbjct: 59 F 59


>gi|257867716|ref|ZP_05647369.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257874043|ref|ZP_05653696.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257801799|gb|EEV30702.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257808207|gb|EEV37029.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 200

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 8/85 (9%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I    ++  +T   LA++  +  ++ +  +         +P   ++ ++      ++ +L
Sbjct: 7  IKERRKQLGMTQEELAKELNVSRSAISNWEIGRN-----YPDITTLIELAQMYQVSLDEL 61

Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPP 97
                      +  K+   L    
Sbjct: 62 FYDDIDLVNKFAEDNKKKEQLKKVN 86


>gi|227893879|ref|ZP_04011684.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864368|gb|EEJ71789.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
          Length = 65

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             + +  ++ NL+   LA+K G+   + N  +          PS E    +  A    
Sbjct: 1  MNRVKKYRKQKNLSQMALAKKIGVARQTINLIENDKYN-----PSLELCLNLAHALGTD 54


>gi|194015234|ref|ZP_03053850.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
 gi|194012638|gb|EDW22204.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
          Length = 156

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +R   +   LA  A +  +  +K +R       + PS + + K+ ++    
Sbjct: 2   IGKVIRIYRKRKGYSIQQLAEDAHVSKSYLSKIERGVH----KNPSVQFLKKVSSSLEID 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
           + +L D        +E  E E    +   +   G     ++
Sbjct: 58  LQELFDAETLMFHDSESGEHEWR-EHIVNAVQSGMPKEELY 97


>gi|206976191|ref|ZP_03237100.1| helix-turn-helix domain protein [Bacillus cereus H3081.97]
 gi|206745645|gb|EDZ57043.1| helix-turn-helix domain protein [Bacillus cereus H3081.97]
          Length = 262

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 6/135 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ +   L+   LA K      + +K +         +P TE +  I      ++
Sbjct: 4   GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L    ++    ++    +           G   S     G     +           
Sbjct: 59  -DYLLKENAEQSNEKENGYYVSKEMAEGYIVYGEKISKYIALGFSLLILSTIPYLLFKED 117

Query: 130 IYAIQTQDTRHKTQD 144
           +              
Sbjct: 118 VTMSTFLVIIIAVFG 132


>gi|217961038|ref|YP_002339606.1| helix-turn-helix domain protein [Bacillus cereus AH187]
 gi|222097090|ref|YP_002531147.1| helix-turn-helix domain protein [Bacillus cereus Q1]
 gi|217067952|gb|ACJ82202.1| helix-turn-helix domain protein [Bacillus cereus AH187]
 gi|221241148|gb|ACM13858.1| helix-turn-helix domain protein [Bacillus cereus Q1]
          Length = 262

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 6/135 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ +   L+   LA K      + +K +         +P TE +  I      ++
Sbjct: 4   GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L    ++    ++    +           G   S     G     +           
Sbjct: 59  -DYLLKENAEQSNEKENGYYVSKEMAEGYIVYGEKISKYIALGFSLLILSTIPYLLFKED 117

Query: 130 IYAIQTQDTRHKTQD 144
           +              
Sbjct: 118 VTMSTFLVIIIAVFG 132


>gi|126729760|ref|ZP_01745573.1| hypothetical protein SSE37_04780 [Sagittula stellata E-37]
 gi|126709879|gb|EBA08932.1| hypothetical protein SSE37_04780 [Sagittula stellata E-37]
          Length = 150

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           ++I   +  + E   L+PS +A   G++ T +++ +    
Sbjct: 68  ERIGYRLRLLREALGLSPSEMADMLGIERTYWSRFENGRR 107


>gi|311747920|ref|ZP_07721705.1| putative transcriptional regulator [Algoriphagus sp. PR1]
 gi|126575914|gb|EAZ80224.1| putative transcriptional regulator [Algoriphagus sp. PR1]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 2/179 (1%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I  + +  +LT   +A +AG+     ++ +               I + L    +
Sbjct: 8   QISNKIKSVRKEKSLTLQDIADRAGVTKGLISQIENGRTI--PSLLVLIEIIQALEVDFD 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +    L    S  +   +++ E        +    +         +    + + EI+   
Sbjct: 66  SFFTELSKFSSGTKVFVQRKNEYQKFEKEDALGFDYSRIFTRKMPSSTIDIVLLEIQPGA 125

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLI 186
              +              S+  +++   + +      +  G         G +  K+L+
Sbjct: 126 KRNFVTTEAFEYKYIISGSVKYIFKDQSVFLNEGDSMLFDGRLTHNPVNEGKVPVKMLV 184


>gi|319424700|gb|ADV52774.1| helix-turn-helix domain protein [Shewanella putrefaciens 200]
          Length = 188

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  +   +    A++ G+      + +R         P+  +++KI +  N +
Sbjct: 8   LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +   L+          +K  E+                  F     +    +
Sbjct: 63  LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFP--FEERFGFEMFEL 112


>gi|17549183|ref|NP_522523.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
 gi|17431435|emb|CAD18113.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          A+  + +R  L+   L+R+AG+  +  ++ +R         P+   ++++  A   ++  
Sbjct: 4  ALQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTN-----PTVAVLWRLANALGVSLTD 58

Query: 72 L 72
           
Sbjct: 59 F 59


>gi|27377565|ref|NP_769094.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350709|dbj|BAC47719.1| bll2454 [Bradyrhizobium japonicum USDA 110]
          Length = 481

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 7/105 (6%)

Query: 1   MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
           M + S KK  +     R+ ++  L+ + +A   G+ P+  N  +R       R  + + +
Sbjct: 1   MPAESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQ-----RPVTAQIL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            ++    +  +  L             +    PL           
Sbjct: 56  LRLAETYDLDLRDLATADEDRFFAELNEIFSDPLFRQIDVPKQEL 100


>gi|83952018|ref|ZP_00960750.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
 gi|83837024|gb|EAP76321.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
          Length = 207

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + + +  + +  + T    A++AGL  ++ +K +   +      P+ E++ K+      
Sbjct: 26 NLGQRVRELRKARDWTLEQAAKQAGLARSTLSKIENGQM-----SPTYEALKKLAVGLEI 80

Query: 68 TICQLLDLPFSDG 80
          ++ QL   P  D 
Sbjct: 81 SVPQLFTAPQKDQ 93


>gi|326383144|ref|ZP_08204833.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326198280|gb|EGD55465.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 469

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  +     L+   LA   G+  +  N+ +        R  +   + KI       
Sbjct: 3  VGGRIRGLRADRALSQQALAAMLGISASYLNQIEHDN-----RPLTGPVLAKITEMFGLD 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
          I               ++      L F P+
Sbjct: 58 IDFFDPQDDVRLVAELREALLDEDLDFDPA 87


>gi|315149981|gb|EFT93997.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0012]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +  +  + N T + LA K G+   +    +++        PS E  F I AA  + 
Sbjct: 19 IKNNLKVLRAQKNWTQADLAEKVGISRQAVISIEKYKYT-----PSLELAFDIAAAFKKP 73

Query: 69 ICQLLDLP 76
          + ++    
Sbjct: 74 VTEVFYQQ 81


>gi|307280502|ref|ZP_07561551.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306504050|gb|EFM73266.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
          Length = 394

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFDQLESFNPD 64


>gi|306830957|ref|ZP_07464119.1| XRE family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325977847|ref|YP_004287563.1| transcriptional regulator cro/C1-type family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|304426980|gb|EFM30090.1| XRE family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325177775|emb|CBZ47819.1| transcriptional regulator cro/C1-type family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 121

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   +  +  R  L  + LA+ A +   + +  +R         PS     +I    N
Sbjct: 53  LKNRLKELRARDGLNQTQLAKLAKVSRQTISLLERNEYT-----PSVIIALRIAHIFN 105


>gi|302343975|ref|YP_003808504.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM
          2075]
 gi|301640588|gb|ADK85910.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM
          2075]
          Length = 104

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +  +     +T   +A   G+  +  ++ ++       R  STE + K+  A 
Sbjct: 49 VRVLRSHRGMTLQQVADACGVTNSHISQIEKG-----KRSMSTELLKKMAEAL 96


>gi|295696288|ref|YP_003589526.1| transcriptional regulator of molybdate metabolism, XRE family
           [Bacillus tusciae DSM 2912]
 gi|295411890|gb|ADG06382.1| transcriptional regulator of molybdate metabolism, XRE family
           [Bacillus tusciae DSM 2912]
          Length = 392

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 30/138 (21%), Gaps = 5/138 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I    +    +   LA + G+        +          P    + ++L  + E +
Sbjct: 13  GRRISERRKALGWSQELLADRLGVSRQFIGALEAGRS--WPSVPVALELARVLGTSVEAL 70

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV--FPTGNKWNTVGVPEIRSPH 127
               +         E        L F                   +   T+  P  R+  
Sbjct: 71  FDPQEAGEIVWGDPEVGATVGTRLRFARVDEHVVAYPLYGREAASSADGTIS-PAGRAEA 129

Query: 128 NGIYAIQTQDTRHKTQDT 145
                ++  D        
Sbjct: 130 FSPEWVEAADHTVAVAGC 147


>gi|291521395|emb|CBK79688.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 45

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          KI + I    +   +T + +A K G+   S +K +R   
Sbjct: 5  KIGKYIAGKRKALGMTQAQVAEKLGMSNKSVSKWERGVS 43


>gi|257884151|ref|ZP_05663804.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257819989|gb|EEV47137.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 370

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 35/120 (29%), Gaps = 8/120 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S   + + +  + +   +T   LA   G+   S +K +          P    + K
Sbjct: 1   MEELS---LSKNVANLRKEKGVTQETLAEFIGVTKASVSKWETGQS-----MPDVLILPK 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + +  + ++ +LL       +   +   +     F         +         ++    
Sbjct: 53  LASFFDVSVDELLGYHPQLTKEQIRHFYQQWTTAFSEEPFEYVMEDCRKAVKQYYSCYPF 112


>gi|226325895|ref|ZP_03801413.1| hypothetical protein COPCOM_03708 [Coprococcus comes ATCC 27758]
 gi|225206019|gb|EEG88373.1| hypothetical protein COPCOM_03708 [Coprococcus comes ATCC 27758]
          Length = 132

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   I + I  + ++ +++   L++  G+  +S  K        +   P+  ++ KI  
Sbjct: 28 RTEDYIADNIIALCKKRDMSKYRLSQLTGISQSSIGKI-----IAKESLPTMPTVEKICD 82

Query: 64 ATNETICQLLDLPF 77
          A   T+ Q      
Sbjct: 83 ALGVTMAQFFAGMD 96


>gi|207722560|ref|YP_002252996.1| phage regulatory protein [Ralstonia solanacearum MolK2]
 gi|206587742|emb|CAQ18324.1| putative phage regulatory protein [Ralstonia solanacearum MolK2]
          Length = 136

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
          K++ E +    + H LT   LA   G+   +    +     GR R P
Sbjct: 28 KELGERVAEARKAHGLTQQQLAEALGIAQQTLAHYE----VGRARLP 70


>gi|159905237|ref|YP_001548899.1| XRE family transcriptional regulator [Methanococcus maripaludis
          C6]
 gi|159886730|gb|ABX01667.1| transcriptional regulator, XRE family [Methanococcus maripaludis
          C6]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    ++ I + +  + +R +L+   L+   G+  +   + +R  +      P+  +I K
Sbjct: 1  MKDL-NEVISKNLKTLRKRKDLSLDALSNLTGVSKSMLGQIERGEVN-----PTISTILK 54

Query: 61 ILAATNETI 69
          I      + 
Sbjct: 55 ISNGLKVSF 63


>gi|111219639|ref|YP_710433.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a]
 gi|111147171|emb|CAJ58819.1| Putative HTH-type transcriptional regulator [Frankia alni ACN14a]
          Length = 139

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++   I    E  NL+ + LA  AG+ P +  + ++       R  +  ++      T
Sbjct: 18 RLGAHIRTRREELNLSRAALAEAAGISPVTLARIEQQRTV-NPRLFTVAALAATFDTT 74


>gi|32470379|ref|NP_863294.1| hypothetical protein MWP024 [Staphylococcus aureus]
 gi|49398102|ref|YP_031701.1| putative regulatory protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253730993|ref|ZP_04865158.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297208875|ref|ZP_06925281.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300913080|ref|ZP_07130516.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21205830|dbj|BAB96521.1| truncated conserved hypothetical protein [Staphylococcus aureus]
 gi|49168433|emb|CAG43234.1| putative regulatory protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253725270|gb|EES93999.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|270055309|gb|ACZ58802.1| hypothetical protein SAP032A_013 [Staphylococcus aureus]
 gi|270055397|gb|ACZ58890.1| hypothetical protein SAP037A_010 [Staphylococcus aureus]
 gi|270269036|gb|ACZ66028.1| hypothetical protein SAP111A_016 [Staphylococcus aureus]
 gi|270269153|gb|ACZ66145.1| hypothetical protein SAP043A_012 [Staphylococcus aureus]
 gi|270299957|gb|ACZ68763.1| hypothetical protein SAP072A_021 [Staphylococcus aureus]
 gi|281334960|gb|ADA62044.1| hypothetical protein SAP053A_001 [Staphylococcus aureus]
 gi|296886493|gb|EFH25420.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300885633|gb|EFK80842.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302334349|gb|ADL24541.1| putative bacteriophage CI repressor [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|304388021|gb|ADM29122.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus]
          Length = 113

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ EAI    E    +   LA    +   S +K +         +PS + +  +      
Sbjct: 2   KLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKN-----YPSLDILIAMSDLFGI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           ++  L+       +   +                  F    FP 
Sbjct: 57  SLEHLIKGDARFKKVILEGNYRESNRVPSIVDFLYDFWWLFFPV 100


>gi|325687904|gb|EGD29924.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK72]
          Length = 94

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  + E+   + + +A   G    + +  +            + S+ ++      +
Sbjct: 2  LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENNKTI-----LDSASLIRLADFYQIS 56

Query: 69 ICQLL 73
          + +L 
Sbjct: 57 LDELC 61


>gi|309799725|ref|ZP_07693941.1| signal peptidase I [Streptococcus infantis SK1302]
 gi|308116641|gb|EFO54101.1| signal peptidase I [Streptococcus infantis SK1302]
          Length = 204

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI-VAKVLISRRGRSIDLMSL 198
            + +  SM P    G+IL +   + +N  D ++     G+  + K +I   G +I   S 
Sbjct: 32  VRVEGHSMDPTLADGEILFVVKHLPINRFDIVVAHEDDGNKDIVKRVIGMPGDTIRYESD 91


>gi|307286630|ref|ZP_07566720.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|306502259|gb|EFM71541.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|315152691|gb|EFT96707.1| helix-turn-helix protein [Enterococcus faecalis TX0031]
          Length = 70

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 14/40 (35%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  E   L+ + LARK  +     +  +      + 
Sbjct: 5  SNLSRYREEIGLSQTELARKMNVTQQCISSWQTGRTIPKP 44


>gi|300782359|ref|YP_003762650.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299791873|gb|ADJ42248.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 139

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I +      ++   L++ AG+     ++ +R       R PS E + +I      
Sbjct: 10 DIGEYIRQQRNTAKISLRQLSKLAGVSNPYLSQIERGV-----RKPSAEILQQIAKGLRI 64

Query: 68 T 68
          +
Sbjct: 65 S 65


>gi|296330586|ref|ZP_06873064.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305674634|ref|YP_003866306.1| putative transcriptional regulator [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|296152268|gb|EFG93139.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305412878|gb|ADM37997.1| putative transcriptional regulator [Bacillus subtilis subsp.
          spizizenii str. W23]
          Length = 132

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M         EAI R+ +    T   +A   G+  +  ++ +R       + PS + I K
Sbjct: 4  MKM------GEAIRRIRKEKKKTLDEVAEAVGITHSYLSRIERN-----LQQPSIQVIEK 52

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK 88
          I          L     S  + +E +++
Sbjct: 53 IADYLGVHKSYLFFDEESLKKYSEPEKQ 80


>gi|295133913|ref|YP_003584589.1| hypothetical protein ZPR_2068 [Zunongwangia profunda SM-A87]
 gi|294981928|gb|ADF52393.1| membrane protein [Zunongwangia profunda SM-A87]
          Length = 214

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++ +   I         +   LA  +GL   +  + +       +R P+ +S+ K+  A 
Sbjct: 3  NQNLSNRIKNFRILKGFSQEALAEHSGLSVRTIQRMENN-----DRIPNADSLKKVAEAL 57

Query: 66 NETICQ 71
            +I +
Sbjct: 58 GISIEE 63


>gi|257869745|ref|ZP_05649398.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|309778441|ref|ZP_07673356.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|257803909|gb|EEV32731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|308913804|gb|EFP59629.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 69

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 5/49 (10%), Positives = 16/49 (32%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
             H  +   +  + +   L+ + LA   G+   + +  +        +
Sbjct: 1  MNEHLILKNRLKEVRKEKKLSQTELAEMVGVSRNTISSIETGQFNPTAK 49


>gi|258517094|ref|YP_003193316.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780799|gb|ACV64693.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 181

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I  + +  N+  + LA K G+     ++ +R       + P  E++ +I +A N 
Sbjct: 2  NIGIRIRELRKNSNINITQLAIKVGISRVYLSELERNI-----KTPPLETLERICSALNI 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLY 94
          T+         +         E  + Y
Sbjct: 57 TLVDFFTENTLETICNNNYFNESTVPY 83


>gi|253580260|ref|ZP_04857526.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848353|gb|EES76317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 70

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          AI       ++T   LA   G+   + N  ++         P+ +   KI    ++++  
Sbjct: 6  AIKVARAEKDMTQKVLAEAVGVSRQTINAIEKGEYN-----PTIKLCRKICRVLDKSLDD 60


>gi|299822098|ref|ZP_07053984.1| DNA-binding protein [Listeria grayi DSM 20601]
 gi|299815627|gb|EFI82865.1| DNA-binding protein [Listeria grayi DSM 20601]
          Length = 133

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          ++ ++   T   LA +  + P++ +K +          P    + K+      T
Sbjct: 27 QLRKKKRFTQKQLAERIDVTPSTISKYEHGT-----HRPPVFILAKLAEELGTT 75


>gi|229196060|ref|ZP_04322812.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293]
 gi|228587442|gb|EEK45508.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293]
          Length = 153

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 36/119 (30%), Gaps = 8/119 (6%)

Query: 3   SFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
                 +    E + ++ E    +   +A+K G+   +  K +          P  +++ 
Sbjct: 1   MLKEGDVMSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----CPDIDNLI 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +    N T+ +L+    +        E++         G    F   +      +  +
Sbjct: 56  LLSEMYNVTLDELIKGNQNIKEKIHIDEEDEDFEKENEFGFYIGFGLLIMSAFIDYEKI 114


>gi|227512465|ref|ZP_03942514.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC
          11577]
 gi|227084290|gb|EEI19602.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC
          11577]
          Length = 103

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   +T + L+ K G   +  N  +          P+  ++ KIL      
Sbjct: 7  GEKLRKLRKSRGMTAAELSAKMGFSQSYINHFETDRAV-----PNVNALGKILKYLGTD 60


>gi|256380757|ref|YP_003104417.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255925060|gb|ACU40571.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 128

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I        ++   L++ AG+     ++ +R       R PS E + +I      +
Sbjct: 16 IGDYIKEQRNSAKISLRQLSKLAGVSNPYLSQIERG-----LRKPSAEILQQIAKGLRIS 70


>gi|217965867|ref|YP_002351545.1| hypothetical protein LMHCC_2596 [Listeria monocytogenes HCC23]
 gi|217335137|gb|ACK40931.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|307569591|emb|CAR82770.1| hypothetical protein lmo4a_0068 [Listeria monocytogenes L99]
          Length = 67

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          K+ E +     R  ++ + LA+  G+ PT  +        G+        I K+L 
Sbjct: 6  KLKELVKIALIRRGISQAELAKTIGISPTYLSDILNENRSGKKVEDIKNQITKLLE 61


>gi|149190536|ref|ZP_01868806.1| hypothetical protein VSAK1_13811 [Vibrio shilonii AK1]
 gi|148835660|gb|EDL52627.1| hypothetical protein VSAK1_13811 [Vibrio shilonii AK1]
          Length = 106

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + R  +   +T   +A K G+  ++  + +R       R  S +   K L     +
Sbjct: 7  IMPILRRFRDLAGITQEQMAVKTGISLSTIKRIERGV-----RSISLDDYHKYLDVLELS 61

Query: 69 ICQ 71
             
Sbjct: 62 HID 64


>gi|2897107|gb|AAC03458.1| Cro-like regulatory protein [Streptococcus phage TP-J34]
          Length = 67

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          I  +  RHNLT    A+  G  P + +  ++  +    + 
Sbjct: 10 IKELRARHNLTQEEFAKSVGTTPQTVSAWEKNQLSISPKN 49


>gi|29376794|ref|NP_815948.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|256960853|ref|ZP_05565024.1| predicted protein [Enterococcus faecalis Merz96]
 gi|29344259|gb|AAO82018.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|256951349|gb|EEU67981.1| predicted protein [Enterococcus faecalis Merz96]
          Length = 121

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S K +   I     R NLT   LA ++GL   +    ++         PS E++ +
Sbjct: 1  MPEDSLKFLGRHIRAERVRCNLTQQELADQSGLAVKTVQDIEKGRKN-----PSYETLSR 55

Query: 61 ILAATNETIC 70
          ++     +  
Sbjct: 56 LIERLGISPN 65


>gi|328885765|emb|CCA59004.1| regulatory protein [Streptomyces venezuelae ATCC 10712]
          Length = 306

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 7/63 (11%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  + +   L+      + G+   + ++ +R   + + RWP  + + ++  A+++ 
Sbjct: 27 LGIRLAALRKGSGLSLEEAGARVGISKATLSRYER--AKTKVRWPLVDQLCRVYEASDDE 84

Query: 69 ICQ 71
            +
Sbjct: 85 RLE 87


>gi|324989604|gb|EGC21549.1| transcriptional regulator [Streptococcus sanguinis SK353]
          Length = 74

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA   G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESKGMTQQELADHIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|309803453|ref|ZP_07697547.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          11V1-d]
 gi|309805571|ref|ZP_07699615.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
 gi|312870937|ref|ZP_07731042.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          3008A-a]
 gi|312872150|ref|ZP_07732223.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2062A-h1]
 gi|325913375|ref|ZP_08175742.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          60-B]
 gi|308164462|gb|EFO66715.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          11V1-d]
 gi|308165110|gb|EFO67349.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
 gi|311092234|gb|EFQ50605.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2062A-h1]
 gi|311093627|gb|EFQ51966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          3008A-a]
 gi|325477301|gb|EGC80446.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          60-B]
          Length = 105

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 2/87 (2%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +  +   I  + +   +T S LAR  G    + +  +              +  K L  +
Sbjct: 2  NNILGSVIKEIRKDKKITQSELARLTGFKQNTISNHENGKRS--LDECDIYTYAKALNVS 59

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPL 92
           +T          D  +   +  +   
Sbjct: 60 PQTFFDKYTNQDKDILSIYNQLHDERQ 86


>gi|307704576|ref|ZP_07641481.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|307621873|gb|EFO00905.1| helix-turn-helix family protein [Streptococcus mitis SK597]
          Length = 74

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESIGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|300856445|ref|YP_003781429.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300436560|gb|ADK16327.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 71

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            ++++ ++H +T   LA+K  +   +    +          PS    FKI    N +I 
Sbjct: 3  NRLEKIRKQHGITQEELAQKLEVSRQTIGSLENGRYN-----PSILLAFKISKFFNVSIE 57

Query: 71 QLLDLPF 77
          ++     
Sbjct: 58 EIFIYEE 64


>gi|257485767|ref|ZP_05639808.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|302130289|ref|ZP_07256279.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|331012863|gb|EGH92919.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tabaci ATCC 11528]
          Length = 131

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  + +   L+ + LA K G +     + +R         P  E + +I    N  
Sbjct: 18 VGAKIKALRKSSTLSQADLAEKIGCEAPLIGRYERGIT-----LPGIEQLIRIATIFNVA 72

Query: 69 ICQ 71
            +
Sbjct: 73 PGE 75


>gi|229010434|ref|ZP_04167638.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048]
 gi|228750854|gb|EEM00676.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|227495327|ref|ZP_03925643.1| transcriptional regulator [Actinomyces coleocanis DSM 15436]
 gi|226831197|gb|EEH63580.1| transcriptional regulator [Actinomyces coleocanis DSM 15436]
          Length = 68

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 4/37 (10%), Positives = 16/37 (43%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          ++   + ++ +   L+   LA+  G+   + +  +  
Sbjct: 6  QLKNNLPQVRKEKGLSQQELAKLVGVSRNTISSIETG 42


>gi|307154678|ref|YP_003890062.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306984906|gb|ADN16787.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 83

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
                KI + I  +     +T    A   G+   + N+ +    +      +   I K+
Sbjct: 7  YKLYQPKIGKLIRSIRLELGMTQEQFAAYLGVVYPTVNRWENGHTQ--PSLMALRLIEKL 64

Query: 62 LAATNETICQL 72
          L    E   + 
Sbjct: 65 LIDLGERGQEF 75


>gi|153954437|ref|YP_001395202.1| hypothetical protein CKL_1812 [Clostridium kluyveri DSM 555]
 gi|219855028|ref|YP_002472150.1| hypothetical protein CKR_1685 [Clostridium kluyveri NBRC 12016]
 gi|146347318|gb|EDK33854.1| Hypothetical protein CKL_1812 [Clostridium kluyveri DSM 555]
 gi|219568752|dbj|BAH06736.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 164

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 139 RHKTQDTSMLPLYRKGDILILNS----AIQVNCGDRLLIKP--RTGDIVAKVLISRRGRS 192
             K    SM P     D ++++         N GD ++  P      +  K +I      
Sbjct: 28  IVKVDGMSMYPTLTDKDRIVVDKYSAMTKDYNYGDIIIFHPYTDNNVLYIKRVIGLPNDK 87

Query: 193 IDL 195
           I +
Sbjct: 88  ITI 90


>gi|159900885|ref|YP_001547132.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893924|gb|ABX07004.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1188

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPT-SFNKSKRFGIEG 48
           H   WE +    + + L+   +A++ G+    + ++ +R  +  
Sbjct: 671 HTAAWERLVEYRQANGLSQKAVAQRLGVKQAITISQWERGMLRP 714


>gi|167645954|ref|YP_001683617.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167348384|gb|ABZ71119.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 69

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  + E   L    LA  AG+ PT  +  +        R  S + + ++ +A    
Sbjct: 7  VGANVRALREARGLPQDELAHLAGVHPTYLSGVETG-----KRNLSMKVLERLASALRVP 61

Query: 69 ICQ 71
             
Sbjct: 62 ETD 64


>gi|94992470|ref|YP_600569.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096]
 gi|94545978|gb|ABF36025.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096]
          Length = 157

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/154 (8%), Positives = 35/154 (22%), Gaps = 12/154 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +  +     +T S L R   ++  + +  ++       +  +       + +     
Sbjct: 4   GHQLKTVRLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYFDP 63

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L  P++    + K++                    +      +       + +    
Sbjct: 64  NYRLLTPYNQLTISNKEKVIGYSERLLNHQIDKKSKDLIDKPSQLYAYRVYESLSAGTGY 123

Query: 130 IYAIQTQ------------DTRHKTQDTSMLPLY 151
            Y                 D        SM PL 
Sbjct: 124 SYFGDGNFDVVFYDEQLEYDFASWVFGDSMEPLI 157


>gi|52143615|ref|YP_083215.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51977084|gb|AAU18634.1| conserved hypothetical protein; possible transcriptional
          regulator [Bacillus cereus E33L]
          Length = 146

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 17/38 (44%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          + E + ++ E   ++   +A+K G+   +  K +    
Sbjct: 3  LGEQLKKLRESKGISQEDVAKKIGVTRQAVYKWENDKS 40


>gi|41406133|ref|NP_958969.1| hypothetical protein MAP0035 [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41394481|gb|AAS02352.1| hypothetical protein MAP_0035 [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 262

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S +    AI  + E  + + + LA   G+     +  +R       R P   ++ KI  
Sbjct: 1  MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGA-----RKPHKSTVQKIEN 55

Query: 64 ATN 66
             
Sbjct: 56 GLG 58


>gi|293550683|ref|ZP_06673350.1| transcriptional regulator [Enterococcus faecium E1039]
 gi|291603210|gb|EFF33395.1| transcriptional regulator [Enterococcus faecium E1039]
          Length = 145

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          + R+ + H +T   LA K  +   + +  +          P  E++ K+L+    
Sbjct: 5  LKRLRKEHGITHENLAEKLHVSRQTISNWENGNT-----LPDIENL-KLLSQFYH 53


>gi|261208044|ref|ZP_05922719.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          TC 6]
 gi|289565525|ref|ZP_06445973.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          D344SRF]
 gi|260077628|gb|EEW65344.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          TC 6]
 gi|289162723|gb|EFD10575.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          D344SRF]
          Length = 87

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  +   L+ + LA+K  +     +  +      + 
Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 60


>gi|256617058|ref|ZP_05473904.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          ATCC 4200]
 gi|256596585|gb|EEU15761.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          ATCC 4200]
          Length = 87

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  +   L+ + LA+K  +     +  +      + 
Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 60


>gi|251788551|ref|YP_003003272.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537172|gb|ACT05793.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 96

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   + R+     L+    A  A    T  ++ +R          S + + ++  A   
Sbjct: 26 RISLNLKRLRAEKGLSQEKAAELADFHRTYVSQLERCVTN-----ISIDGLERLAEALGV 80

Query: 68 TICQLLDLPFSDGRTT 83
           I +LL +P S    +
Sbjct: 81 DITELLQIPDSSQADS 96


>gi|257063020|ref|YP_003142692.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
 gi|256790673|gb|ACV21343.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
          Length = 215

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + R+ +   LT   LA+ +G+   +  + ++   +      S E+   I    + +   
Sbjct: 151 NLKRLRKLSGLTQEQLAQLSGISVRTIQQYEQRRKDVNK--ASLETAVAIATVLHCSPSD 208


>gi|229083918|ref|ZP_04216223.1| hypothetical protein bcere0022_5720 [Bacillus cereus Rock3-44]
 gi|228699399|gb|EEL52079.1| hypothetical protein bcere0022_5720 [Bacillus cereus Rock3-44]
          Length = 75

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          M   S   I   +  +  R N T S LA K G+   +    ++ 
Sbjct: 1  MVKLS---ICNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 41


>gi|229114588|ref|ZP_04244002.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3]
 gi|228668653|gb|EEL24081.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|227484905|ref|ZP_03915221.1| hypothetical protein HMPREF0072_0308 [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237060|gb|EEI87075.1| hypothetical protein HMPREF0072_0308 [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 205

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 18/217 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI +AI    E  N +   LA + G    +  + +R          S +   +I      
Sbjct: 2   KIGQAIKYRREELNYSLEYLANRIGKSIPTMYRYERSEN---PDVLSLDVFLEICEILKT 58

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           T  ++L    +  R      K  P +   P  S  +         +    V       P 
Sbjct: 59  TPDEILSDVDNYIR---SNAKVFPSVIRVPLFSDDYILEAH--NEDAEFYVPFDN---PS 110

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKG-DILILNSAIQVNC-GDRLLIKPRTGDIVAKVL 185
              Y      T +K ++T+  P      DI+ +    +     + + ++     +     
Sbjct: 111 EIPY---KDITAYKIKNTTNFPNCFDKGDIIYICKVKEFEDKKNYIFLREADNKVQLIKA 167

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
                 +   +  N    V  ++ ++++ I ++L  S
Sbjct: 168 RLLDEGNFLFIDENNK--VIELQHNNLKLIGKLLQIS 202


>gi|188583054|ref|YP_001926499.1| XRE family transcriptional regulator [Methylobacterium populi
          BJ001]
 gi|179346552|gb|ACB81964.1| transcriptional regulator, XRE family [Methylobacterium populi
          BJ001]
          Length = 79

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + +   + R+     L+   LA    +D T  +  +R       R  S +++ ++    
Sbjct: 10 REILATNLRRIRAEKGLSQDALADLCEIDRTYISGVERG-----LRNVSIDTLERLATGL 64

Query: 66 NETIC 70
               
Sbjct: 65 RLEPW 69


>gi|149916489|ref|ZP_01905006.1| transcriptional regulator, XRE family protein [Roseobacter sp.
          AzwK-3b]
 gi|149809591|gb|EDM69447.1| transcriptional regulator, XRE family protein [Roseobacter sp.
          AzwK-3b]
          Length = 435

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I   I      + +  S LA+  G+ P+  N  +        R  + +++ K+     
Sbjct: 7  IGTRIRERRVMNGIRQSELAKMVGISPSYLNLIEHN-----RRRIAGKTLIKLAEVLE 59


>gi|222053908|ref|YP_002536270.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221563197|gb|ACM19169.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 150

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKA--GLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          KI   +  +    +LT   LA     GLD T   K +R       + PS + + KI  A 
Sbjct: 4  KIGSRLKMLRMERSLTQKELAVMVSGGLDYTYIGKIERGE-----QLPSLKILLKISDAL 58


>gi|84501143|ref|ZP_00999378.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
 gi|84391210|gb|EAQ03628.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
          Length = 207

 Score = 43.2 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  + +  + T    AR+AGL  ++ +K +   +      P+ +++ K+      +
Sbjct: 27 LGDRVRELRKARDWTLEQAAREAGLARSTLSKIENGQM-----SPTYDALRKLATGLGIS 81

Query: 69 ICQLLDLP 76
          + QL   P
Sbjct: 82 VPQLFTPP 89


>gi|329117486|ref|ZP_08246203.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326907891|gb|EGE54805.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 194

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + +    ++  L+   LA K  +   + +  +         +P   S+  +      
Sbjct: 2  ELGKKLSSCRKKAGLSQEDLAEKIYVSRQTISNWENDKS-----YPDIHSLIALANLFQL 56

Query: 68 TICQ 71
          ++ Q
Sbjct: 57 SLDQ 60


>gi|239983769|ref|ZP_04706293.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291455574|ref|ZP_06594964.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291358523|gb|EFE85425.1| transcriptional regulator [Streptomyces albus J1074]
          Length = 200

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  +      +   LA +A L  +S ++ +        R  + + +  +  A + T
Sbjct: 12  VRKRIRALRLAQGWSLEELAGRANLSQSSLSRIENG-----RRRLALDQLVTLARALDTT 66

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           + QL++    D   +   +     + +P  G  G        TG   +            
Sbjct: 67  LDQLVETASDDVIISPVIDSARGRMQWPVKGDPGVTVVRQRVTGPPPDNPARMRAHPGRE 126

Query: 129 GIYAIQTQDTRH 140
            +  +       
Sbjct: 127 WLVVLSGTAILM 138


>gi|221635639|ref|YP_002523515.1| transcriptional Regulator of molybdate metabolism, XRE family
           [Thermomicrobium roseum DSM 5159]
 gi|221157546|gb|ACM06664.1| transcriptional Regulator of molybdate metabolism, XRE family
           [Thermomicrobium roseum DSM 5159]
          Length = 506

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 5/122 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +        L+   LA +AG+   +    +   +      PS     ++  A   
Sbjct: 140 QLIVRVRERRRSCGLSQQQLAERAGISRQTLVAIEAGRLT-----PSVAVALRLARALGC 194

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +L           +    E   +  P     G           + +T     +    
Sbjct: 195 AVEELFSFAEPPLLEAQLALSERWTVPIPSRVRLGRVGETFVAWPVRDDTGEAEGMIRER 254

Query: 128 NG 129
            G
Sbjct: 255 AG 256


>gi|58337201|ref|YP_193786.1| transcriptional regulator [Lactobacillus acidophilus NCFM]
 gi|227903784|ref|ZP_04021589.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58254518|gb|AAV42755.1| putative transcriptional regulator [Lactobacillus acidophilus
          NCFM]
 gi|227868671|gb|EEJ76092.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 112

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +   + + I    E  ++T + LA K+G++ T+ NK ++       R  S++ +  I 
Sbjct: 1  MTNQTNLAQKITNYREAQDMTQAELADKSGIERTALNKIEKGT-----RKVSSDELKAIA 55

Query: 63 AATNET 68
           A N +
Sbjct: 56 LALNIS 61


>gi|85708475|ref|ZP_01039541.1| transcriptional regulator, XRE family protein [Erythrobacter sp.
          NAP1]
 gi|85690009|gb|EAQ30012.1| transcriptional regulator, XRE family protein [Erythrobacter sp.
          NAP1]
          Length = 445

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          + R+ +R  LT + +A   G+ P+  N  +R       R
Sbjct: 12 LRRLRKREGLTQAAMAASLGISPSYLNLIERNQRPLSAR 50


>gi|146291531|ref|YP_001181955.1| XRE family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145563221|gb|ABP74156.1| transcriptional regulator, XRE family [Shewanella putrefaciens
           CN-32]
          Length = 188

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  +  +   +    A++ G+      + +R         P+  +++KI +  N +
Sbjct: 8   LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGES-----SPTIATLWKIASGFNIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +   L+          +K  E+                  F     +    +
Sbjct: 63  LSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFP--FEERFGFEMFEL 112


>gi|119715961|ref|YP_922926.1| peptidase S24, S26A and S26B [Nocardioides sp. JS614]
 gi|119536622|gb|ABL81239.1| peptidase S24, S26A and S26B [Nocardioides sp. JS614]
          Length = 113

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 142 TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV-LISRRGRS----IDLM 196
               SM PL   GD L+++       G  ++ +   G +  K     R  R+      L+
Sbjct: 12  VSGRSMTPLLAPGDRLLVSYRRPARPGAVVVARLADGTVAVKRAAQRRTTRTGQAGWWLL 71

Query: 197 SLNCC 201
           S N  
Sbjct: 72  SDNPD 76


>gi|324990830|gb|EGC22765.1| transcriptional regulator [Streptococcus sanguinis SK353]
          Length = 136

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I + I  + +R N++   LA + G+   +  K +      
Sbjct: 2  ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVP 41


>gi|325970299|ref|YP_004246490.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324025537|gb|ADY12296.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 122

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          M + S +++   I R+ +  ++T   LA   G+     NK      
Sbjct: 1  MGTLSFEEVGNTIKRILDEQDMTQQALATAIGVSKQVMNKIVAGNK 46


>gi|322378078|ref|ZP_08052565.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334]
 gi|321281060|gb|EFX58073.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334]
          Length = 108

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I   I  +     +T   LA +  L     ++ +        R  S E+  KI+ A  
Sbjct: 6  ENISNQIRDLRASKKITQQELAERTNLSVPYISQIENNH-----RNISLETFVKIVDALE 60

Query: 67 ETICQLLDLPFSDGRTTEKK 86
           T+            T   +
Sbjct: 61 VTLSDFFLPYSVPQDTEMME 80


>gi|307710145|ref|ZP_07646589.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619125|gb|EFN98257.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 108

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + I   I  +     +T   LA +  L     ++ +        R  S E+  KI+ A  
Sbjct: 6  ENISNQIRDLRASKKITQQELAERTNLSVPYISQIENNH-----RNISLETFVKIVDALE 60

Query: 67 ETICQLLDLPFSDGRTTEKK 86
            +            T   +
Sbjct: 61 VPLSDFFLPYSVPQDTEMME 80


>gi|293380865|ref|ZP_06626901.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1]
 gi|290922538|gb|EFD99504.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1]
          Length = 118

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 5/123 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               + I + I    E   LT   LA+K  +   S +K ++ G       P  + +  + 
Sbjct: 1   MIDIQAIGQRIKSYRENAKLTQDNLAQKLNVSRQSVSKWEKGGS-----LPDIDRLVTMS 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
              + ++ +L+     + +    ++     L F    +  ++   +           + E
Sbjct: 56  ELFDISLDKLILGKDKNVQKVVLEKSPSTHLNFGDFLAKYWWIILILLPLIGDAISEIIE 115

Query: 123 IRS 125
             S
Sbjct: 116 AFS 118


>gi|197303602|ref|ZP_03168640.1| hypothetical protein RUMLAC_02330 [Ruminococcus lactaris ATCC
          29176]
 gi|197297336|gb|EDY31898.1| hypothetical protein RUMLAC_02330 [Ruminococcus lactaris ATCC
          29176]
          Length = 255

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I  +  +  L+   LARK  +   + ++ +          P+TE++  +    + 
Sbjct: 2  EVKDIIYGLRVKKGLSQDALARKVMVTRQAVSRWENGETV-----PNTETLKLLSKEFDV 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|182624148|ref|ZP_02951935.1| transcriptional regulator [Clostridium perfringens D str.
          JGS1721]
 gi|177910764|gb|EDT73124.1| transcriptional regulator [Clostridium perfringens D str.
          JGS1721]
          Length = 141

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          +  + +  N++   LA++  +   + +K +    +      +   + KI 
Sbjct: 7  LKELRKEKNISQEQLAKELNISRQAISKWESG--KAYPDIDNLILLRKIF 54


>gi|91787958|ref|YP_548910.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91697183|gb|ABE44012.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 207

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 5/117 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + +I + +  +    +L+   LA   G+  +  +  +R         P+   + K+    
Sbjct: 17  NDRIAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGES-----SPTAVLLEKLATGL 71

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           N  +  L + P        +   +                     +  +   V  P 
Sbjct: 72  NVPLASLFEAPQPTKDPVARLADQPSWRDPHSGYVRRNVSPSGVASPIQIVEVSFPA 128


>gi|15597508|ref|NP_251002.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116050256|ref|YP_790927.1| XRE family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891714|ref|YP_002440581.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254240751|ref|ZP_04934073.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192]
 gi|9948345|gb|AAG05700.1|AE004657_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115585477|gb|ABJ11492.1| putative transcriptional regulator, XRE family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126194129|gb|EAZ58192.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192]
 gi|218771940|emb|CAW27719.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 193

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               +++   + R+  + NL+   LAR +G+      + +          PS + + KI 
Sbjct: 7   DLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSV-----PSIKVLCKIA 61

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                ++   LD     G      ++   L+    + +          
Sbjct: 62  QGLKVSVAAFLDDRAFAGVAVLPAQQSKRLVSADGAFTSRALFPFDVA 109


>gi|22855028|ref|NP_690788.1| hypothetical protein phi105_35 [Bacillus phage phi105]
 gi|4126641|dbj|BAA36661.1| unnamed protein product [Bacteriophage phi-105]
          Length = 92

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      K+   I    +  +L  + +A+  G+  T  +  +          PST+++ +
Sbjct: 1  MLDGKKLKLGALIKDKRKEKHLKQTEMAKALGMSRTYLSDIENGRY-----LPSTKTLSR 55

Query: 61 IL 62
          I 
Sbjct: 56 IA 57


>gi|107101758|ref|ZP_01365676.1| hypothetical protein PaerPA_01002802 [Pseudomonas aeruginosa PACS2]
 gi|296389278|ref|ZP_06878753.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110791|ref|ZP_07796645.1| putative transcriptional regulator, XRE family [Pseudomonas
           aeruginosa 39016]
 gi|310883147|gb|EFQ41741.1| putative transcriptional regulator, XRE family [Pseudomonas
           aeruginosa 39016]
          Length = 210

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               +++   + R+  + NL+   LAR +G+      + +          PS + + KI 
Sbjct: 24  DLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSV-----PSIKVLCKIA 78

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                ++   LD     G      ++   L+    + +          
Sbjct: 79  QGLKVSVAAFLDDRAFAGVAVLPAQQSKRLVSADGAFTSRALFPFDVA 126


>gi|183217341|gb|ACC59260.1| antitoxin PezA [Streptococcus pneumoniae]
          Length = 158

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 6/138 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + + H LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2   IGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEK-EIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              ++          + +   +I ++    +             G   +    P I    
Sbjct: 57  YVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQDSQGISIDDESNPWILMSD 116

Query: 128 NGIYAIQTQDTRHKTQDT 145
           +    I T     +T D 
Sbjct: 117 DLSDLIHTNIYLVETFDE 134


>gi|315302906|ref|ZP_07873642.1| signal peptidase I [Listeria ivanovii FSL F6-596]
 gi|313628720|gb|EFR97117.1| signal peptidase I [Listeria ivanovii FSL F6-596]
          Length = 181

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                 SM+P     D +I+N    V+  D ++ +   G    K +I   G +++  + 
Sbjct: 35  ILVDGISMMPTLHNDDRVIINRFGHVDRFDVIVFRENDGKEYIKRVIGLPGDTVEYKAD 93


>gi|302672180|ref|YP_003832140.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302396653|gb|ADL35558.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 119

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I ++ E+  ++ S   +  GL  ++ +  K      +   PS + I  I  A + T
Sbjct: 3  ISERIFKILEQRGISQSAFGKMVGLSGSTISDWK-----TKKTNPSADKIMTICDALDIT 57

Query: 69 ICQ 71
            Q
Sbjct: 58 PEQ 60


>gi|298250551|ref|ZP_06974355.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
 gi|297548555|gb|EFH82422.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
          Length = 376

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 39/160 (24%), Gaps = 8/160 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN--RWPSTESIFKILAATNETIC 70
           + +       + + LA++ G  P + +  +R         R      + K  A  N    
Sbjct: 27  LKKERTIRGWSQAMLAQELGTTPNTISAWERDVSMPSPYFRTKLCALLGKNAAELNLVEE 86

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPP--SGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
            L     +  +T         + Y     S                 NTV  P    P  
Sbjct: 87  DLEPATLNQWKTEPSPIASEDITYPKQNISPENSAILPSSREVQEVENTVTYPS--FPRR 144

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
             +  +            +      G +L +   +     
Sbjct: 145 KWFTGKRALFAL--VCCLLALSITVGLVLYVIPGLHAEKN 182


>gi|295110847|emb|CBL24800.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 255

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 5/51 (9%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I  +  +  ++   LA K  +   + ++ +               + K+  
Sbjct: 7  ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKL--LSKVFD 55


>gi|295134629|ref|YP_003585305.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda
          SM-A87]
 gi|294982644|gb|ADF53109.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda
          SM-A87]
          Length = 144

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          T  SH  I   I R+ E   +    LA + G+   S +  ++            E + K+
Sbjct: 11 TKTSH--IGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSE------HIEDEKLEKV 62

Query: 62 LAATNETICQLLDLPF 77
                +   + +   
Sbjct: 63 AKVLGVSKEAIENFSE 78


>gi|294623869|ref|ZP_06702697.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          U0317]
 gi|291596823|gb|EFF28046.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          U0317]
          Length = 394

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKERRNEYGVSQNKLATACGLSRPYLNQIENGGVIA-----STKTMRKIFDQLESFNPD 64


>gi|289640812|ref|ZP_06472983.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289509388|gb|EFD30316.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 98

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++  A+  + +R   + + LAR AG+  ++  + +  G       P    + + L 
Sbjct: 32 ELGRAVRELRQRRAWSQAELARTAGMTQSAVARFEAGGTV--PTLPVLGRLAEALD 85


>gi|264678072|ref|YP_003277979.1| XRE family transcriptional regulator [Comamonas testosteroni
          CNB-2]
 gi|262208585|gb|ACY32683.1| transcriptional regulator, XRE family [Comamonas testosteroni
          CNB-2]
          Length = 139

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           I   +  + E+  L+   LA + G+   S    +        R P    + ++
Sbjct: 18 NIATRLKEVREQLGLSQQALAERCGVSARSQRNYESGE-----RLPDAAYLAEL 66


>gi|257882474|ref|ZP_05662127.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257818132|gb|EEV45460.1| transcriptional regulator [Enterococcus faecium 1,231,502]
          Length = 394

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKERRNEYGVSQNKLATACGLSRPYLNQIENGGVIA-----STKTMRKIFDQLESFNPD 64


>gi|229012522|ref|ZP_04169696.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048]
 gi|228748682|gb|EEL98533.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048]
          Length = 242

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/201 (10%), Positives = 60/201 (29%), Gaps = 14/201 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +   +T   LA   G+   S +K +         +P    +  + +  N +
Sbjct: 6   IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I +L+       +   K         F               T   ++   +        
Sbjct: 61  IDELICYTPQMKQEDIKNLYHRLAEAFSEEPFDEVMMECREVTKKYYSCFPLLIQMGLLF 120

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
             + + T+D   +           +  + + +   + +    L+ +  +      ++++R
Sbjct: 121 INHHMLTEDMDRRI-------EILEEAMYLFSRVQEESDDVSLVKEAASFQATCYLILNR 173

Query: 189 RGRSIDLMSLN--CCYPVDTV 207
               + L+       +P + +
Sbjct: 174 PNEVLQLLGETIRPNFPEEDL 194


>gi|229016335|ref|ZP_04173281.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273]
 gi|229022576|ref|ZP_04179104.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272]
 gi|228738725|gb|EEL89193.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272]
 gi|228744982|gb|EEL95038.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKIYVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +      K++    +
Sbjct: 60 ELLRSDEELTQKVIADSKQLAYPKW 84


>gi|218677991|ref|ZP_03525888.1| XRE family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   +  +  R NL    LA ++G+  ++ +  +R  +      PS +++  +L A   
Sbjct: 3  KIGSKLHELRRRRNLGVRELAARSGISHSTISLIERDKM-----SPSIDTLSAVLEALGT 57

Query: 68 TICQLL 73
          T+    
Sbjct: 58 TMPGFF 63


>gi|218290726|ref|ZP_03494808.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218239264|gb|EED06463.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 73

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +    ++  LT   LA+++GL P+           G  + PS +++ KI  A    +  L
Sbjct: 5  VREARQQRGLTIYELAKRSGLAPSFVWNL----DHGNIKSPSIQTLSKIAKALGCEVTDL 60

Query: 73 LDLPFSDGRTTEK 85
           +      +    
Sbjct: 61 YEDDEEVTKRERA 73


>gi|218290717|ref|ZP_03494799.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218239255|gb|EED06454.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 77

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +    KI   I    +   +T   LA   G+   S +  +        R  S  ++ +
Sbjct: 1  MRNLDPVKIGSRIRSARQSKGMTVESLANAIGISKGSLSAIETG-----KRPVSLLNLTR 55

Query: 61 ILAATNET 68
          I    + +
Sbjct: 56 ISDVLDIS 63


>gi|191638861|ref|YP_001988027.1| Transcriptional regulator, xre family [Lactobacillus casei BL23]
 gi|190713163|emb|CAQ67169.1| Transcriptional regulator, xre family [Lactobacillus casei BL23]
 gi|327382909|gb|AEA54385.1| hypothetical protein LC2W_2053 [Lactobacillus casei LC2W]
 gi|327386093|gb|AEA57567.1| hypothetical protein LCBD_2071 [Lactobacillus casei BD-II]
          Length = 344

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 5/96 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I        LT   LA K G+   + +  ++        +P    +  +       
Sbjct: 3   IDQVIRERRLALGLTQEELANKIGVSAPAVSIWEKGVS-----YPDITLLPALARILGTD 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           +  LL    +      +   E  +     +G     
Sbjct: 58  VNTLLTFSVTMDPEESRHLYEKLMTTAKDAGWQAAV 93


>gi|146341478|ref|YP_001206526.1| transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146194284|emb|CAL78306.1| putative transcriptional regulator, with HTH domain (N-terminal)
           and a RmlC-like cupin domain (C-terminal)
           [Bradyrhizobium sp. ORS278]
          Length = 221

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/192 (8%), Positives = 44/192 (22%), Gaps = 34/192 (17%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H ++ + +    +   LT   +A K G+  ++ +K +   +       + + + ++ +  
Sbjct: 14  HSQLGQCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLM-----SLTYDKLLQLTSGL 68

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPL---------------LYFPPSGSGGFFDSGVFP 110
              I +L                   +                 +  +   G     +  
Sbjct: 69  QMDIAELFSPAAPRPEPGRPVTARRSVSRAGQGQIVSTKFYTYTYQCTDLIGKRMVPMIT 128

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                       +       Y + T+            P                  GD 
Sbjct: 129 EVRARTLDEFGPLLRHSGEEYFLVTRG-TIAVHTEFYAPEILHE-------------GDG 174

Query: 171 LLIKPRTGDIVA 182
           + +    G    
Sbjct: 175 IYLDSTMGHAYL 186


>gi|319428175|gb|ADV56249.1| DNA polymerase V subunit, UmuD [Shewanella putrefaciens 200]
          Length = 142

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 12/127 (9%)

Query: 101 GGFFDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
              +    FP          P         S    +    +       +  SM+      
Sbjct: 1   MSIYPLIPFPAHAGITGFESPAAQYAKAGLSLDELLILHPSTTWIGVAKGDSMIGEGIFD 60

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM-SDI 212
           GD+LI++  I       ++ +   G+ V K+L         L+S N  Y    +    + 
Sbjct: 61  GDLLIVDRDIIAENNSVIVARLN-GEFVCKILDK---NRRMLLSSNEKYQAVPIHEYDEF 116

Query: 213 EWIARIL 219
                ++
Sbjct: 117 SVEGVVI 123


>gi|160878226|ref|YP_001557194.1| XRE family transcriptional regulator [Clostridium phytofermentans
           ISDg]
 gi|160426892|gb|ABX40455.1| transcriptional regulator, XRE family [Clostridium phytofermentans
           ISDg]
          Length = 273

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 34/129 (26%), Gaps = 11/129 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  +     L+   LA +  +   S +K +          P    +  +      ++   
Sbjct: 7   LIELRRERGLSQEQLADQLDVSRQSVSKWESDQT-----MPELSKLITLSEIFEVSL-DY 60

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L   +   R+  +++K+  +           + S         + +  P         Y 
Sbjct: 61  LMRDYIMDRSGTREKKDNTVDDKDIPNRENRYSSLETQINEINDYIKRPRG-----FEYK 115

Query: 133 IQTQDTRHK 141
            +       
Sbjct: 116 SKKTLFGLP 124


>gi|37676355|ref|NP_936751.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200897|dbj|BAC96721.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 232

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 13/177 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I  +  R  +T    +++ GL  ++ +K +   I      P+ +++ K+      
Sbjct: 52  KLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLKI 106

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + QL + P     T  +                              N   +P     H
Sbjct: 107 DMPQLFEPPRKKVATGRRDITLAGQ----GKPHPTQTYEHELLATQLSNKKMMPFKSVVH 162

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVA 182
              +         +      L +              V    GD +      G ++ 
Sbjct: 163 ARTFEEYGD--WVRHDGEEFLLILSGAVQFYSEFYEPVVLSEGDSVYYDANMGHMLV 217


>gi|332994215|gb|AEF04270.1| putative prophage repressor [Alteromonas sp. SN2]
          Length = 137

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 134 QTQDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
                    Q  SM+      GD+LI++ A  ++    ++     G+ V K +  R G  
Sbjct: 38  PAATFIGYAQGKSMMDDGIHDGDLLIVSRAEDISDMCIIV-ATLNGEFVCKRVDKRHG-- 94

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIARIL 219
             L S +  Y    ++  D   I  ++
Sbjct: 95  -CLRSSSPLYKPYFLKEGDEFSIEGVV 120


>gi|332797145|ref|YP_004458645.1| XRE family transcriptional regulator [Acidianus hospitalis W1]
 gi|332694880|gb|AEE94347.1| transcriptional regulator, XRE family [Acidianus hospitalis W1]
          Length = 238

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           I  ++ +  E   ++ S LAR  G+  T     +R       R P +  + K +   
Sbjct: 23 NIGLSMKKWREMFGISQSELARVLGISQTVIADYERG-----RRQPGSAFVKKFVQGL 75


>gi|324020661|gb|EGB89880.1| toxin-antitoxin system, antitoxin component, Xre domain protein
           [Escherichia coli MS 117-3]
          Length = 140

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 8/113 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E +  M E+  LT S LA + GL P++ ++ +          P    I ++      
Sbjct: 34  EIVEMLYEMREKAGLTKSALAERMGLRPSAISRLES--------NPYQTDIPRVFLQPVH 85

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
              +     +    T    E+      F                      + +
Sbjct: 86  IQPRYGTPVYHPAATQHAFERVTTQELFHHLCIAHIRHRFWHTLCAGITVLSL 138


>gi|258592092|emb|CBE68397.1| conserved protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 410

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/177 (9%), Positives = 39/177 (22%), Gaps = 11/177 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              +    E   L    LA   G+   + ++ +      R      E + KI        
Sbjct: 10  GARLREAREARGLPAIALADLIGVTRAAVSQYENSVQTPRP-----EVMEKIARTLQLPQ 64

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                      R                + +   +             V  P +  P   
Sbjct: 65  EYFRRPISRIERGAIFYRSMSAATKAARARAECRYSWLREIVTYLREFVQFPPMNIPDFN 124

Query: 130 IYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV----NCGDRLLIKPRTGDIVA 182
           +     + + ++     +    R+   +       V         ++++   G    
Sbjct: 125 LPDDPVRISYNQI--EELATQSRQFWKIGEGPIGNVVRLLENNGIVVVRDELGAETL 179


>gi|257439368|ref|ZP_05615123.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257198243|gb|EEU96527.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + ++ +   L+ S LA  AG++   + K ++   +      +T  + +I  A +  + 
Sbjct: 12 EKLQKLRQAAGLSQSQLAEAAGVNVRMYQKYEQGDRDISKAQLTT--LLRICKALSCKLS 69

Query: 71 QLLDLPF 77
           ++    
Sbjct: 70 DIVTDAE 76


>gi|255974915|ref|ZP_05425501.1| predicted protein [Enterococcus faecalis T2]
 gi|257421700|ref|ZP_05598690.1| predicted protein [Enterococcus faecalis X98]
 gi|255967787|gb|EET98409.1| predicted protein [Enterococcus faecalis T2]
 gi|257163524|gb|EEU93484.1| predicted protein [Enterococcus faecalis X98]
          Length = 81

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  +     +T   LA+K G+   +    +        R     ++ KI  A   T+  +
Sbjct: 12 IYDLRREKRMTQKELAKKTGITERTIINYEN--SIDALRNAKYSTVEKIATALGVTVDDI 69

Query: 73 L 73
           
Sbjct: 70 F 70


>gi|254805385|ref|YP_003083606.1| hypothetical transcriptional regulator [Neisseria meningitidis
           alpha14]
 gi|254668927|emb|CBA07148.1| hypothetical transcriptional regulator [Neisseria meningitidis
           alpha14]
 gi|254670077|emb|CBA04959.1| transcriptional regulator [Neisseria meningitidis alpha153]
 gi|254672200|emb|CBA05097.1| transcriptional regulator [Neisseria meningitidis alpha275]
          Length = 126

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 2/84 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I +  +    +   LA    L     ++ +R    G+        I   L      
Sbjct: 22  IGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGV--GKINISHLVDIAVFLETPIAW 79

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPL 92
             Q           T +   E   
Sbjct: 80  FFQDCLPKPLTVACTPENTPEQQW 103


>gi|221632745|ref|YP_002521967.1| Helix-turn-helix domain-containing protein [Thermomicrobium
          roseum DSM 5159]
 gi|221156190|gb|ACM05317.1| Helix-turn-helix domain protein [Thermomicrobium roseum DSM 5159]
          Length = 154

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + R  E   L+ S LA++AG D +  ++ +        R P+ E+I ++  A        
Sbjct: 8  LRRYRESARLSQSRLAQRAGFDHSYVSRLESG-----RRAPTREAILRLAEALELGPADR 62


>gi|154498829|ref|ZP_02037207.1| hypothetical protein BACCAP_02820 [Bacteroides capillosus ATCC
          29799]
 gi|150272219|gb|EDM99423.1| hypothetical protein BACCAP_02820 [Bacteroides capillosus ATCC
          29799]
          Length = 307

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          MT F H      +  +  R   T   LA   G+   + +K +    
Sbjct: 1  MTHFEH-----NLPILRRRAGYTQESLAEALGVSRQAVSKWESGQT 41


>gi|170732473|ref|YP_001764420.1| XRE family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254245889|ref|ZP_04939210.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184]
 gi|124870665|gb|EAY62381.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184]
 gi|169815715|gb|ACA90298.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
           MC0-3]
          Length = 221

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA ++G+  +  +  +R         P+   + K+ A  
Sbjct: 30  NERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASA-----SPTAIVLDKLAAGL 84

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEI 123
             ++  L      D        +     +  P+      +     +P+  +   V  P  
Sbjct: 85  GVSLAALFGGDRGDAPAQPLARRAQQAEWRDPASGYVRRNLSPAGWPSPIQLVEVDFPPG 144


>gi|95929475|ref|ZP_01312218.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134591|gb|EAT16247.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans
           DSM 684]
          Length = 307

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 9/134 (6%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             AI +  E  +LT   +A+  G+   + ++ +        R P+ E + + L    + I
Sbjct: 17  GAAIRQAREDQSLTQLYVAKMVGVTTDTISRWENNRYPTIKR-PNAEKLAEALEVPLDQI 75

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
               +        +    +   ++                     W     P +      
Sbjct: 76  LWQEEEVPQPQTRSWGLSRRWLIVVLSLCLLVVGLT--------VWLWPQPPIVAERVLP 127

Query: 130 IYAIQTQDTRHKTQ 143
            YA        + +
Sbjct: 128 SYAAPGAVFPVQLR 141


>gi|261207839|ref|ZP_05922524.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566390|ref|ZP_06446818.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|83940994|gb|ABC48899.1| hypothetical protein [Enterococcus faecium]
 gi|260078222|gb|EEW65928.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161828|gb|EFD09700.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 122

 Score = 43.2 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K I + I     + N T   +A + G+ P   +  +           S  ++  I    +
Sbjct: 6  KAIGKRIKIARIKKNFTQEAVADRIGVSPQHVSNIETGNS-----SVSLPTLVAIANMLS 60

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
           ++ +LL       +   ++E +    
Sbjct: 61 VSVDELLCDTVLTSKPIFEREAKDIFE 87


>gi|332366465|gb|EGJ44213.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1059]
          Length = 94

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  + E+   + + +A   G    + +  +            + S+ ++      +
Sbjct: 2  LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTI-----LDSASLIRLADFYQIS 56

Query: 69 ICQLL 73
          + +L 
Sbjct: 57 LDELC 61


>gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 126

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +++       I +      LT   L    G+  ++  K +          P  E++ K
Sbjct: 1  MPTYTGD----MIRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQN-----PKIETLQK 51

Query: 61 ILAAT 65
          I  A 
Sbjct: 52 IADAL 56


>gi|327474019|gb|EGF19432.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK408]
          Length = 94

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  + E+   + + +A   G    + +  +            + S+ ++      +
Sbjct: 2  LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTI-----LDSASLIRLADFYQIS 56

Query: 69 ICQLL 73
          + +L 
Sbjct: 57 LDELC 61


>gi|266622653|ref|ZP_06115588.1| putative helix-turn-helix protein [Clostridium hathewayi DSM
          13479]
 gi|288865608|gb|EFC97906.1| putative helix-turn-helix protein [Clostridium hathewayi DSM
          13479]
          Length = 195

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          K+   I +  +   LT   +A   G+   + +K +R   
Sbjct: 5  KVGRLILQFRKEKGLTQQQVADLLGISNKTVSKWERGLG 43


>gi|254819085|ref|ZP_05224086.1| helix-turn-helix domain-containing protein [Mycobacterium
          intracellulare ATCC 13950]
          Length = 263

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S +    AI  + E  + + + LA   G+     +  +R       R P   ++ KI  
Sbjct: 1  MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSFLERGA-----RKPHKSTVQKIEN 55

Query: 64 ATN 66
             
Sbjct: 56 GLG 58


>gi|239905667|ref|YP_002952406.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
 gi|239795531|dbj|BAH74520.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
          Length = 108

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +  +    ++T   LA +AGL   S  + +R    G     + E +   L     ++
Sbjct: 9  GKRVRSLRRAKDMTQEQLAERAGLSLQSVGEIERGR--GNPTLVNIERLSAALEEDLASL 66

Query: 70 CQ 71
            
Sbjct: 67 FD 68


>gi|307067495|ref|YP_003876461.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|306409032|gb|ADM84459.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
          Length = 156

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K++ + I ++      T    ++  GLD T     +        R  S E+I KI     
Sbjct: 4  KELGQEIRKLRTARGFTQETFSKACGLDRTYIADVELG-----KRNISIENIDKIAKGLA 58

Query: 67 ETICQLLDLPFSDGR 81
           T+ +L        +
Sbjct: 59 ITLPELFKFNSPIQK 73


>gi|261409020|ref|YP_003245261.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261285483|gb|ACX67454.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10]
          Length = 121

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 6/114 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I++ I+ + E   +T        G+   +F   KR         PST  + +I A  +
Sbjct: 2   QSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTT-----PSTNKLIEIAAFFS 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
            ++  L+    S     ++   E  +       +     +           +  
Sbjct: 57  VSLDWLIIGRGSPTSRVKEARGEYEVDPESLDPALMSGLAEHEK-EFIREYIEF 109


>gi|163748288|ref|ZP_02155574.1| transcriptional regulator, XRE family protein [Oceanibulbus
          indolifex HEL-45]
 gi|161378438|gb|EDQ02921.1| transcriptional regulator, XRE family protein [Oceanibulbus
          indolifex HEL-45]
          Length = 83

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 1  MTSF--SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M+    + +++   I R  ++   T   LA +AGL   + +  +      +      E+I
Sbjct: 1  MSDLARTSRQVGTLIQRARKKRAWTQMKLAERAGLRQATISMIEHGEKPAK-----LETI 55

Query: 59 FKILAAT 65
            ILAA 
Sbjct: 56 LAILAAL 62


>gi|149924308|ref|ZP_01912679.1| transcriptional regulator, XRE family protein [Plesiocystis
          pacifica SIR-1]
 gi|149814844|gb|EDM74411.1| transcriptional regulator, XRE family protein [Plesiocystis
          pacifica SIR-1]
          Length = 494

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 5/72 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +   +        +T + LAR+ G+  +  N  +        R    E +  +     
Sbjct: 14 NNLGSKVRAKRRARGMTQAELARRLGISASYLNLIEHNQ-----RPLRAELLLSLAREFG 68

Query: 67 ETICQLLDLPFS 78
            +         
Sbjct: 69 LGLDDFASDDDH 80


>gi|148256143|ref|YP_001240728.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146408316|gb|ABQ36822.1| putative transcriptional regulator, with HTH domain and a RmlC-like
           cupin domain [Bradyrhizobium sp. BTAi1]
          Length = 222

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/192 (8%), Positives = 43/192 (22%), Gaps = 34/192 (17%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H ++   +    +   LT   +A K G+  ++ +K +   +       + + + ++ +  
Sbjct: 15  HSQLGHCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLM-----SLTYDKLLQLTSGL 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPL---------------LYFPPSGSGGFFDSGVFP 110
              I +L                   +                 +  +   G     +  
Sbjct: 70  QMDIAELFSPAAPRPEPGRPVTARRSISRAGQGQVVNTRFYTYVYQCTDLIGKRMVPMIT 129

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
                       +       Y + T+            P                  GD 
Sbjct: 130 EVRARTLDEFGPLLRHSGEEYFLVTRG-TIAVHTEFYAPEILHE-------------GDG 175

Query: 171 LLIKPRTGDIVA 182
           + +    G    
Sbjct: 176 IYLDSTMGHAYL 187


>gi|69245870|ref|ZP_00603687.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|256853747|ref|ZP_05559112.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          T8]
 gi|257879179|ref|ZP_05658832.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|257882002|ref|ZP_05661655.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,502]
 gi|68195572|gb|EAN10014.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|256710690|gb|EEU25733.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          T8]
 gi|257813407|gb|EEV42165.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|257817660|gb|EEV44988.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,502]
          Length = 87

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  +   L+ + LA+K  +     +  +      + 
Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKP 60


>gi|322516911|ref|ZP_08069808.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
 gi|322124534|gb|EFX96016.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
          Length = 158

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2  IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69 ICQLLDLPFSDGRTT 83
             ++          
Sbjct: 57 YVDIVGEDKMLNPVE 71


>gi|319945801|ref|ZP_08020052.1| XRE family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|322387055|ref|ZP_08060666.1| XRE family transcriptional regulator [Streptococcus infantis ATCC
          700779]
 gi|319748161|gb|EFW00404.1| XRE family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|321142042|gb|EFX37536.1| XRE family transcriptional regulator [Streptococcus infantis ATCC
          700779]
          Length = 148

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + +   LT   ++   G+   ++++ +   +E     P  E + K+      T
Sbjct: 10 ERLKTLRKSKKLTQVQISELIGVQQGTYSRWENGTLE-----PGLEFVVKLANIFGTT 62


>gi|315169255|gb|EFU13272.1| helix-turn-helix protein [Enterococcus faecalis TX1341]
          Length = 154

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +K + E I R+    N T   L+ KA +   + NK        R   P   ++ +I  
Sbjct: 1  MKNKIVSENIGRLIRDRNFTQKELSSKANISRNTINKL---SSTKRENNPKLSTLIEISK 57

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
            +    QL     +   T ++       L  
Sbjct: 58 VLDVDFPQLFSRNINMKSTYDRDMNLESYLNI 89


>gi|317055585|ref|YP_004104052.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315447854|gb|ADU21418.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 313

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42
          I   I ++ +  ++T   LA   G+   + ++ +
Sbjct: 4  IGSTIRQLRQEQDITQEQLAEALGITSRAVSQWE 37


>gi|262282360|ref|ZP_06060128.1| predicted protein [Streptococcus sp. 2_1_36FAA]
 gi|262261651|gb|EEY80349.1| predicted protein [Streptococcus sp. 2_1_36FAA]
          Length = 96

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 5/73 (6%), Positives = 23/73 (31%), Gaps = 10/73 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M         + +  + E+   + + ++   G    + +  +            + S+ +
Sbjct: 1  MQML-----GKQLKLLREQKGYSQNQISEYLGTTRQTISNWENDKTI-----IDSHSLIR 50

Query: 61 ILAATNETICQLL 73
          +      ++ +L 
Sbjct: 51 LADFYQISLDELC 63


>gi|227553860|ref|ZP_03983907.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177015|gb|EEI57987.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 108

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFNQLESFNPD 64


>gi|222151155|ref|YP_002560309.1| Cro/CI family transcriptional regulator homolog [Macrococcus
          caseolyticus JCSC5402]
 gi|222120278|dbj|BAH17613.1| Cro/CI family transcriptional regulator homolog [Macrococcus
          caseolyticus JCSC5402]
          Length = 111

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S+ +I   I        ++ + L+R+ G+  ++ ++        + R           
Sbjct: 1  MRSNDEIINIISTELSNKGMSAAELSRRVGIAKSALSRYLN-----KTREFPLNKAEDFA 55

Query: 63 AATNET 68
           A + +
Sbjct: 56 NALDIS 61


>gi|297198135|ref|ZP_06915532.1| transcriptional regulatory protein [Streptomyces sviceus ATCC
           29083]
 gi|197714170|gb|EDY58204.1| transcriptional regulatory protein [Streptomyces sviceus ATCC
           29083]
          Length = 201

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 6/124 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  ++ KI  A  
Sbjct: 20  QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 74

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125
            +I  LLD            E+ + L +               P     W+   +P   S
Sbjct: 75  ISITTLLDYEQGPKVRIVPAEQAVRLWHTDAGSYNRLLAGAEAPGPLEMWDWRLMPGESS 134

Query: 126 PHNG 129
           P + 
Sbjct: 135 PSDP 138


>gi|170783094|ref|YP_001711428.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169157664|emb|CAQ02865.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 153

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S   + E + R+     L+   LA   G+   +    +        R PS E++ ++ A
Sbjct: 1  MSDASVGEELRRLRREAALSQRELAAVTGVPQPNIAAYESG-----RRQPSPETLVRLGA 55

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          A        +            + +   +  F
Sbjct: 56 ALRAPSLDRVRASRGPILEVAARRRLSDVRVF 87


>gi|322389322|ref|ZP_08062881.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis
          ATCC 903]
 gi|321143986|gb|EFX39405.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis
          ATCC 903]
          Length = 291

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + ++  ++   LA K G+   +  K +          P  E+I  I    N +I 
Sbjct: 5  EKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGI-----PDIENIISISNLFNISID 59

Query: 71 QLLDLPF 77
          +L+    
Sbjct: 60 ELICNER 66


>gi|301018664|ref|ZP_07182991.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 69-1]
 gi|300399610|gb|EFJ83148.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 69-1]
          Length = 88

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          S  ++  A+  + +++  T SGLA+K G+   + +  +  
Sbjct: 9  SPTQLANAMKLVRQQNGWTQSGLAKKIGIKQATISNFENN 48


>gi|294620464|ref|ZP_06699773.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1679]
 gi|291593377|gb|EFF24942.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1679]
          Length = 394

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKERRNEYGVSQNKLATACGLSRPYLNQIENGGVIA-----STKTMRKIFDQLESFNPD 64


>gi|291301766|ref|YP_003513044.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290570986|gb|ADD43951.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 80

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++ I+  I  +     ++   LA   G+   +    +R         PS     +I    
Sbjct: 5  NEVIYNRIAMLRAERGISRRQLAEALGVHYQTIGYLERGEY-----SPSLYLALRIAQYF 59

Query: 66 N 66
           
Sbjct: 60 E 60


>gi|229095638|ref|ZP_04226619.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29]
 gi|228687770|gb|EEL41667.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|300767936|ref|ZP_07077844.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|300494477|gb|EFK29637.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
          Length = 128

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I + A+++ LT + +A  AGL  ++    K+         PS  ++ ++      
Sbjct: 13 ELLKNIRQFAKKNGLTLAEVATLAGLSASAIYSWKKHT-------PSVGTLKEVAQVLGT 65

Query: 68 TI 69
          + 
Sbjct: 66 SY 67


>gi|254976683|ref|ZP_05273155.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255094066|ref|ZP_05323544.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255315817|ref|ZP_05357400.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255518478|ref|ZP_05386154.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255651598|ref|ZP_05398500.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|306521406|ref|ZP_07407753.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
          Length = 45

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          I E +  + + H  T   LA K  +   S  K +    + +
Sbjct: 2  INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGVSQTK 42


>gi|225571103|ref|ZP_03780120.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM
          15053]
 gi|225160184|gb|EEG72803.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM
          15053]
          Length = 63

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I ++ +   L    LA ++G+   +    +          P+ E   K+    + T+ 
Sbjct: 3  NNIKQLRKSRGLRQEDLAARSGVSRQTIIAIENDKYN-----PTLELAMKLARLLDTTVE 57

Query: 71 Q 71
          +
Sbjct: 58 E 58


>gi|222152322|ref|YP_002561497.1| DNA-binding protein [Streptococcus uberis 0140J]
 gi|222113133|emb|CAR40543.1| putative DNA-binding protein [Streptococcus uberis 0140J]
          Length = 67

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  + + H ++ + LA    +   +    ++          S E  FK+    N +I 
Sbjct: 3  NRIQELRKEHKISQAELAEAMEVTRQTIISLEKGRYNA-----SLELAFKLATYFNLSIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DIFIYKE 64


>gi|212710089|ref|ZP_03318217.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens
          DSM 30120]
 gi|212687296|gb|EEB46824.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens
          DSM 30120]
          Length = 94

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 5/86 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K +   I ++ + + LT + +A    +    F++ +R            +S+  I     
Sbjct: 14 KIVGSRIKKLRKEYGLTGTEIAAYLNVSQQQFSRYERGINR-----IDIDSLVMIADFFK 68

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPL 92
           +I    +   +          E  L
Sbjct: 69 ISIHYFFEDISTVQINNWTVNTETYL 94


>gi|254420939|ref|ZP_05034663.1| conserved domain protein [Brevundimonas sp. BAL3]
 gi|196187116|gb|EDX82092.1| conserved domain protein [Brevundimonas sp. BAL3]
          Length = 476

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +   + R+     LT + +A   G+ P+  N  +R       R  S + + ++  
Sbjct: 11 LGARLKRLRRDLALTQTAMAADLGVSPSYLNHIERNQ-----RPVSAQLLLRLAE 60


>gi|157150934|ref|YP_001450194.1| Cro/CI family transcriptional regulator putative [Streptococcus
          gordonii str. Challis substr. CH1]
 gi|262282528|ref|ZP_06060296.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|157075728|gb|ABV10411.1| transcriptional regulator, Cro/CI family, putative [Streptococcus
          gordonii str. Challis substr. CH1]
 gi|262261819|gb|EEY80517.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 136

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I + I  + +R N++   LA + G+   +  K +      
Sbjct: 2  ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVP 41


>gi|114766945|ref|ZP_01445865.1| hypothetical protein 1100011001299_R2601_23885 [Pelagibaca
           bermudensis HTCC2601]
 gi|114540852|gb|EAU43914.1| hypothetical protein R2601_23885 [Roseovarius sp. HTCC2601]
          Length = 145

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 15/120 (12%)

Query: 107 GVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI--- 163
              P  + +     P++  P    Y         + +  SM P++  GD+L         
Sbjct: 21  AHVPVFDAYEKGDGPQVECPPGLSY---NGVVAVEVEGDSMEPVFSAGDLLFYTRDTHDG 77

Query: 164 --QVNCGDRLLIKPRTGDIVAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDIE--WIARI 218
                 G R +++  +G    K +         +L+SLN           D++  W AR+
Sbjct: 78  VPDDVIGHRCVVEDASGMGWVKQVKLGSEPGLFNLISLNPSADNMH----DVKLNWAARV 133


>gi|110800378|ref|YP_696991.1| putative transcriptional regulator [Clostridium perfringens ATCC
          13124]
 gi|110675025|gb|ABG84012.1| putative transcriptional regulator [Clostridium perfringens ATCC
          13124]
          Length = 127

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+   +      I    +    +   LA+   + P   N  +    +      + E + K
Sbjct: 1  MSKLINNA-GNLIRSKRKEKGYSTQELAKLLNVSPGLINNIENGKTD----TFNLELLHK 55

Query: 61 ILAATNET 68
          I    N +
Sbjct: 56 ISDILNIS 63


>gi|26988905|ref|NP_744330.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983715|gb|AAN67794.1|AE016410_10 transcriptional regulator, Cro/CI family [Pseudomonas putida
           KT2440]
 gi|313499699|gb|ADR61065.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 184

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 44/173 (25%), Gaps = 14/173 (8%)

Query: 3   SFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              H++I      I  + +   LT   LA++ G      ++ +R         P+   + 
Sbjct: 1   MKVHEEIEGLAVLIRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSR-----PTVADLT 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            I      +      L          +  E   L+     +       +    +  ++  
Sbjct: 56  AISEELGVSTAYFYKLDKPRELDWVTRPHERRTLHLAGGITDVLASPSITGAFSMLDSHL 115

Query: 120 VPEIRSPHNGI-YAIQTQDTRHKTQ-----DTSMLPLYRKGDILILNSAIQVN 166
            P   S    +  + +      + +       +        D   L    +  
Sbjct: 116 QPGASSGEEYLDDSSEQGCFVLEGELTVWLGDAEPVTLHANDSFQLQPHARFR 168


>gi|322375624|ref|ZP_08050136.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C300]
 gi|321279332|gb|EFX56373.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C300]
          Length = 152

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + ++  +T   +A   G+    F K +    +      + ++  ++       +
Sbjct: 1  MNRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQ-----ITLKNAAQLADYFGVPL 55

Query: 70 CQLLDLPFSD 79
            LL+     
Sbjct: 56 SYLLNQEEEW 65


>gi|330399583|ref|YP_004030681.1| hypothetical protein RBRH_00758 [Burkholderia rhizoxinica HKI 454]
 gi|312170320|emb|CBW77359.1| unnamed protein product [Burkholderia rhizoxinica HKI 454]
          Length = 159

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I  A+ +     +LT + LAR AGL   + N+ +     G+ +      +  +L+    
Sbjct: 5   EIGWAVAKRRTELDLTQAQLARLAGLSRFTVNQLE----TGKLKDLGINKLIALLSVLGI 60

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
            +           R T          +           +G  P G
Sbjct: 61  ELTVKRRSEQKGLRKTAVSANVSYKGHLTEHLLANALATGQIPQG 105


>gi|308272863|emb|CBX29467.1| hypothetical protein N47_J04480 [uncultured Desulfobacterium sp.]
          Length = 225

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/163 (9%), Positives = 35/163 (21%), Gaps = 18/163 (11%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + ++   I  + +   L+   LA       +  ++ +    +G     S   + +I  A 
Sbjct: 35  NAQVARTIYELRKDAGLSQGELAELVETTQSVISRLEDADYDGH----SLSMLQRIAKAL 90

Query: 66  NETICQLLDLPFSDGRTTEKKEK--------EIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +            T              E            G             + 
Sbjct: 91  SCRLNVTFKKDDPKVTTLRYAFGELIKKLRLEGGWSIDQFVKKAGIDKEEALSIERDLSY 150

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
              P         Y I  Q          +    +     I+ 
Sbjct: 151 KPSPLTLYKIAEFYKIPQQKIAV------LAGAIKPNQNNIVE 187


>gi|260461784|ref|ZP_05810030.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|319785325|ref|YP_004144801.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gi|259032425|gb|EEW33690.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|317171213|gb|ADV14751.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
          Length = 72

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              K I   + R+ +R  LT   LA  +G      +  ++       R P+  +I+++ 
Sbjct: 1  MDMRKLIGRNVQRIRQRKRLTQEQLADISGFSQQYISGLEKG-----RRNPTIITIYELA 55

Query: 63 AATNETICQ 71
           A   +   
Sbjct: 56 LALGVSHMD 64


>gi|257095404|ref|YP_003169045.1| XRE family transcriptional regulator [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257047928|gb|ACV37116.1| transcriptional regulator, XRE family [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 108

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          ++ E +  + +   LT   LA  AGL  +   + +    +     PS E +
Sbjct: 4  RLGEKLRELRKERGLTLEKLADLAGLSKSYLWELENRESQ----RPSAEKL 50


>gi|299820781|ref|ZP_07052670.1| XRE family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299817802|gb|EFI85037.1| XRE family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 111

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             +K I   I    E +  +   LA+       + ++ +       +R  S + ++++ 
Sbjct: 1  MELNKYIGNKIRFFREENGYSQEKLAQLLRTSRQTVSRYENG-----DRKASQDVLYELA 55

Query: 63 AATNETICQLLDLPFSDGRT 82
              +++         D   
Sbjct: 56 QLFGKSMDDFFPPREIDPPN 75


>gi|197301830|ref|ZP_03166900.1| hypothetical protein RUMLAC_00557 [Ruminococcus lactaris ATCC
          29176]
 gi|197299270|gb|EDY33800.1| hypothetical protein RUMLAC_00557 [Ruminococcus lactaris ATCC
          29176]
          Length = 54

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 3  SFSHKKIW--EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
               +I   E I  + +   ++   LA +  +   + +K +R   +
Sbjct: 7  KIKEAQIMLNENIKNLRKAKGISQEELAVRLNVVRQTVSKWERGVSQ 53


>gi|153816198|ref|ZP_01968866.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC
          27756]
 gi|317500518|ref|ZP_07958741.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331089382|ref|ZP_08338281.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145846533|gb|EDK23451.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC
          27756]
 gi|316898107|gb|EFV20155.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330404750|gb|EGG84288.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 95

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I R+  R+ L  + LA+K  +   S +  +R         P    + +I      +
Sbjct: 30 VGENIRRLRMRNQLKQADLAQKLNISRQSLSAYERGIT-----LPDIYLLIEIADFFRIS 84

Query: 69 ICQ 71
          + +
Sbjct: 85 LDE 87


>gi|91215022|ref|ZP_01251994.1| transcriptional regulator, putative [Psychroflexus torquis ATCC
          700755]
 gi|91186627|gb|EAS72998.1| transcriptional regulator, putative [Psychroflexus torquis ATCC
          700755]
          Length = 67

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I    +   ++ + LA K      + N+ +R       R PS E ++K+    +  I
Sbjct: 1  MNRIKEGLKDKGISQTWLAEKMVKSYQTINEYERN-----KRQPSLEDLYKVAGILDFNI 55

Query: 70 CQ 71
           +
Sbjct: 56 SE 57


>gi|332364098|gb|EGJ41875.1| transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 74

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSVRESIGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|317488433|ref|ZP_07946986.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA]
 gi|325832081|ref|ZP_08165178.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|316912477|gb|EFV34033.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA]
 gi|325486402|gb|EGC88854.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 254

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 5/98 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +    +L+ + LA   G+   S  K +         +P  + + K+      ++ 
Sbjct: 5   DNLQHLRGTRDLSQAQLATLLGVSRQSVAKWE-----AEKSYPEMDKLIKLCDLFECSLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
            L+    +   T  +   E              +D  +
Sbjct: 60  DLVRGDLTGCATASEAIVEAEPASAAMPVDKDGYDEHM 97


>gi|300783935|ref|YP_003764226.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299793449|gb|ADJ43824.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 74

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 3  SFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               ++  ++  +   H  +T + LA + G+   +    ++         PS E  F+I
Sbjct: 1  MVKPTRVTNSLRALRFAHGQMTQADLATRIGVTRQTVIAIEQGRY-----SPSLEMAFQI 55

Query: 62 LAATNETICQLLDLPF 77
                 + ++   P 
Sbjct: 56 AHVFGVPLEEVFQYPE 71


>gi|295106954|emb|CBL04497.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 73

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          + +++   I  + E   L+    A   G+  T     +        R  S  ++  I   
Sbjct: 7  TQRRLGLRIKDLREERGLSQYACAPLLGVSRTYLADVECG-----RRNVSLATLDSIARG 61

Query: 65 TNETICQ 71
             ++ +
Sbjct: 62 LGISLEE 68


>gi|295101270|emb|CBK98815.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6]
          Length = 109

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I    E+   T   L+   G+ P   +  +R          S E++ ++      
Sbjct: 10 EIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGAS-----GISLEALQRLCRLLGV 64

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  +++              + I  +
Sbjct: 65 SADRIIFGTEEPEAEALALARRISDI 90


>gi|271963369|ref|YP_003337565.1| signal peptidase I [Streptosporangium roseum DSM 43021]
 gi|270506544|gb|ACZ84822.1| signal peptidase I [Streptosporangium roseum DSM 43021]
          Length = 220

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 140 HKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
            +    SM    R+GD +++N    +   GD ++ +   G    K +I+  G ++
Sbjct: 57  FRIPSESMENTLREGDRVVVNKLHGETERGDVVVFEGWPGGDTIKRVIAVGGDTV 111


>gi|302555572|ref|ZP_07307914.1| transcriptional regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302473190|gb|EFL36283.1| transcriptional regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 212

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 6/134 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I +       +   LAR+ G+  +  ++ +    +     PS  +++ I  A   +
Sbjct: 9   VGARIRQARLERGTSLRALAREVGVSASLVSQIETGKSQ-----PSVSTLYAITTALGIS 63

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +  L D   S           +       +   G     +   G +  T+ +        
Sbjct: 64  VESLFDARASAPVAAASPPGTVLRALAALAADPGRRIGPLVGAGER-ETLELDSGVVWER 122

Query: 129 GIYAIQTQDTRHKT 142
                         
Sbjct: 123 LGRVPGVDVDFLLV 136


>gi|239981315|ref|ZP_04703839.1| helix-turn-helix domain-containing protein [Streptomyces albus
          J1074]
          Length = 105

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  +     LT   +A + G+     ++ +R  + G+      E + +   A    +
Sbjct: 37 GRKLAELRRARGLTQQEVADRMGVSKGRISQIERGHLSGQ------EVLARFATALGGRL 90

Query: 70 CQLLDLPF 77
           Q +    
Sbjct: 91 HQAIYFDD 98


>gi|227545279|ref|ZP_03975328.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300908649|ref|ZP_07126112.1| XRE family transcriptional regulator [Lactobacillus reuteri
          SD2112]
 gi|227184748|gb|EEI64819.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300894056|gb|EFK87414.1| XRE family transcriptional regulator [Lactobacillus reuteri
          SD2112]
          Length = 69

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE---SIFKILAATN 66
             + +  +   L+   LA+K G+   + N  +          PS E   ++ K L    
Sbjct: 1  MNRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYN-----PSLELCINLAKALNTDL 55

Query: 67 ETICQLLDLPFSDG 80
           ++         + 
Sbjct: 56 NSLFWEEHTDERNN 69


>gi|224541132|ref|ZP_03681671.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525941|gb|EEF95046.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM
          15897]
          Length = 217

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 5/72 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I        LT   +A   G+   + +  +         +P   S+ K+    + 
Sbjct: 4  DIGSKIKAARIGKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 58

Query: 68 TICQLLDLPFSD 79
          ++  LL      
Sbjct: 59 SLDYLLKGEEKM 70


>gi|169349492|ref|ZP_02866430.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM
          1552]
 gi|169293567|gb|EDS75700.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM
          1552]
          Length = 77

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          I++ I  + E  +LT   LA    +   S+++ +R       R  + E + KI 
Sbjct: 3  IYKRIRDLREDKDLTQKDLANYLNVSQKSYSRYERGE-----RTIAPEILSKIA 51


>gi|16271780|ref|NP_438117.1| repressor protein [Temperate phage phiNIH1.1]
 gi|21910799|ref|NP_665067.1| putative repressor - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876377|ref|NP_795544.1| putative repressor [Streptococcus pyogenes phage 315.4]
 gi|28895512|ref|NP_801862.1| repressor protein [Streptococcus pyogenes SSI-1]
 gi|71903944|ref|YP_280747.1| Cro/CI family phage transcriptional regulator [Streptococcus
           pyogenes phage 6180.2]
 gi|94990867|ref|YP_598967.1| Cro/CI family phage transcriptional regulator [Streptococcus phage
           10270.3]
 gi|16156172|gb|AAL15046.1| repressor protein [temperate phage PhiNIH1.1]
 gi|21905003|gb|AAM79870.1| putative repressor - phage-associated [Streptococcus pyogenes phage
           315.4]
 gi|28810761|dbj|BAC63695.1| putative repressor protein [Streptococcus pyogenes SSI-1]
 gi|71803039|gb|AAX72392.1| phage transcriptional regulator, Cro/CI family [Streptococcus
           pyogenes phage 6180.2]
 gi|94544375|gb|ABF34423.1| phage transcriptional regulator, Cro/CI family [Streptococcus phage
           10270.3]
          Length = 119

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT F   +++  I+ +A++  ++   +A   GL        K        +  +T+ I K
Sbjct: 1   MTMF---EVYSRIEALAKKRGVSLQKVATDIGLSENYIYNLKS------KKTANTDPIEK 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I    N +      L  +D     +       +         FF  G        + +
Sbjct: 52  IANYFNVST--DYLLGRTDNPKMAQDGHTSVAIDLKKDAEETFFFDGHELNDEDIDLI 107


>gi|219667836|ref|YP_002458271.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219538096|gb|ACL19835.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 198

 Score = 43.2 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          K+   I ++ +   LT   +A    +   + +K +R   
Sbjct: 5  KVGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLG 43


>gi|332665060|ref|YP_004447848.1| helix-turn-helix domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332333874|gb|AEE50975.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 174

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 17/39 (43%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           + E + +  +   LT   LA+++G      ++ +    +
Sbjct: 113 VGEVLRQARKEAGLTQEELAKRSGTTKHYISRIENHHAD 151


>gi|297162496|gb|ADI12208.1| hypothetical protein SBI_09090 [Streptomyces bingchenggensis BCW-1]
          Length = 199

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + +    T S L+   G+  ++ ++ +        R P+ E +  +  A    
Sbjct: 13  VGPRLRSLRQARGATLSQLSETTGISVSTLSRLESGQ-----RKPTLELLLPLAKAYQVP 67

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
           + +L+  P +       +        F P    
Sbjct: 68  LDELVGAPATGDPRVHPRPFTRHGRVFVPLTRH 100


>gi|291534560|emb|CBL07672.1| Predicted transcriptional regulators [Roseburia intestinalis
          M50/1]
          Length = 144

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           ++ +I   I    + ++ T   +A+K GL  ++  + ++  I    + P+ +SI K L 
Sbjct: 1  MTNVEIGYRIYMARKENHATLEEVAKKVGLAKSTIQRYEKGLINDV-KLPNIQSIAKALN 59

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
               I    +      +   K       L  
Sbjct: 60 VNPNWIIGKSEEMHVQTQIYPKIIDYYNQLND 91


>gi|289649274|ref|ZP_06480617.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          aesculi str. 2250]
          Length = 109

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +     L  S +A     +P + ++ +R         P+ E + ++      +
Sbjct: 5  VAARLKLLRTGKGLKQSEVAELIDCEPNTISRYERAET-----MPNIEDLLRLADLFGVS 59

Query: 69 ICQLLDLPFSDGRTTE 84
            ++L    S  +   
Sbjct: 60 PMEILPPQDSTTQRIH 75


>gi|289549615|ref|YP_003470519.1| putativetranscriptional regulator [Staphylococcus lugdunensis
          HKU09-01]
 gi|289179147|gb|ADC86392.1| putativetranscriptional regulator [Staphylococcus lugdunensis
          HKU09-01]
          Length = 368

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI + I     +  LT   LA    +   + +K +   +      P  + + K+    N 
Sbjct: 3  KINKVIKAQRTKLGLTQDKLAAYLDITKPTISKWENGSL-----MPDIQLLPKLAKLFNM 57

Query: 68 TICQLLDLPF 77
          ++ +LLD   
Sbjct: 58 SVDELLDYQD 67


>gi|320012637|gb|ADW07487.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 206

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 44/146 (30%), Gaps = 11/146 (7%)

Query: 1   MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           M+  +         + + I  +      +   LA +A +  ++ ++ +        R  +
Sbjct: 1   MSPVTQNDDELDSLVRKRIRALRVAQGWSLEELAGRAHIGQSTLSRIENG-----RRRLA 55

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            + +  +  A + ++ QL++    D  T+   +    L+ +   G  G        T   
Sbjct: 56  LDQLVTLARALDTSLDQLVETASDDVVTSPTIDAAHGLMRWAVKGDPGMSVVRQRMTEPP 115

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140
            +             +  +       
Sbjct: 116 PDNPARMRAHPGREWLVVLSGTAVLM 141


>gi|229056760|ref|ZP_04196162.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603]
 gi|228720554|gb|EEL72118.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|282600115|ref|ZP_05973067.2| conserved domain protein [Providencia rustigianii DSM 4541]
 gi|282566469|gb|EFB72004.1| conserved domain protein [Providencia rustigianii DSM 4541]
          Length = 96

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + S     E +       NLT S LA   GL   S  + +   I+ + R+     I +
Sbjct: 28 MNTLS-----ERVKSRRVELNLTQSELADMVGLKQQSIQQIESGLIK-KPRF-----IIE 76

Query: 61 ILAATNETICQ 71
          I +A       
Sbjct: 77 IASALKCEPSW 87


>gi|239627346|ref|ZP_04670377.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517492|gb|EEQ57358.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 183

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 48/158 (30%), Gaps = 8/158 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I R+ E + L+   L++ +G+  +   + +R         P+  +++K+       
Sbjct: 8   VAKNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGN-----PTISTLWKLSNGMKVP 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L   P S     +  E +  L       +   F          +  + + E     +
Sbjct: 63  FDALTVRPKSPYEIVDTAELQPLLEDGGKVKNYSIFPDDENRRFAVY-YLELDEGSFWES 121

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN 166
             +   T +    +     +     G    +     + 
Sbjct: 122 EPHLKGTTEFITISAGRIEISA--DGHRFTVGKGESIR 157


>gi|221210350|ref|ZP_03583330.1| putative transposase [Burkholderia multivorans CGD1]
 gi|221169306|gb|EEE01773.1| putative transposase [Burkholderia multivorans CGD1]
          Length = 341

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 2  TSFSHKKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
             + ++  E I  +A + H +    +AR+ G+   +  +  R      +  P      K
Sbjct: 4  KMLTQEQSLE-IRVLARQGHGI--KAIARELGVSRNTVRRYLRGEATPPSYGPRAARPRK 60

Query: 61 ILAATNETICQLLDLPFSDGRTT 83
          +   T     ++          T
Sbjct: 61 LDPYTQYLRDRIEAAHPHWIPAT 83


>gi|209519410|ref|ZP_03268207.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209500149|gb|EEA00208.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 212

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     +T   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 34  RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  L   P            +IP L    +         +   G  +    +
Sbjct: 89  SLDSLFAQPKPPEVIAVSGPHDIPTLSGHDAKYQLRVWGPIELAGK-FEWYEL 140


>gi|149921925|ref|ZP_01910368.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149817187|gb|EDM76665.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 111

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + R+ +   L+   LA + GL   +  + +          PS  ++  +       +  +
Sbjct: 16 LRRLRKTRGLSQEALATRGGLSNDTIRRLEHGTF-----SPSLNTLVGLATGLGLRLSTI 70

Query: 73 LDLPFSDGRTTEKKEKEIPL 92
          L          E++  ++ +
Sbjct: 71 LASYEIGMLPVERELADLLV 90


>gi|89212744|gb|ABD63852.1| putative repressor [Lactococcus phage phismq86]
 gi|326407702|gb|ADZ64773.1| phage repressor [Lactococcus lactis subsp. lactis CV56]
          Length = 136

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          +  + ++  LT   LA K G   ++ ++ +          P  E I  +    N  + 
Sbjct: 12 VKTLRQQAGLTMKQLAEKMGKTESAISRWESGDN-----SPKLEDINALADFFNVDMN 64


>gi|229544193|ref|ZP_04433252.1| signal peptidase I [Bacillus coagulans 36D1]
 gi|229325332|gb|EEN91008.1| signal peptidase I [Bacillus coagulans 36D1]
          Length = 175

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 142 TQDTSMLPLYRKGDILI---LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
            +  SM P     D ++   ++SA     GD ++      +   K +I   G +I + 
Sbjct: 32  VEGESMEPTLHNHDKILVYKVHSAADYQRGDIII-IKGETENYVKRIIGLPGDTILVK 88


>gi|114765327|ref|ZP_01444444.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601]
 gi|114542307|gb|EAU45336.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601]
          Length = 206

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +  + T    AR+AGL  ++ +K +   +      P+ +++ K+      
Sbjct: 25 DLGARVRELRKARDWTLEQAAREAGLARSTLSKIENGQM-----SPTYDALKKLAVGLGI 79

Query: 68 TICQLLDLP 76
           + QL   P
Sbjct: 80 GVPQLFTPP 88


>gi|24380321|ref|NP_722276.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gi|24378337|gb|AAN59582.1|AE015021_3 putative transcriptional regulator [Streptococcus mutans UA159]
          Length = 81

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 5/77 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + + + L+ S LA    +   +    ++          S E  +KI      TI  
Sbjct: 4  RIQELRKINKLSQSELADALSVTRQTIISLEKGRYNA-----SLELAYKIAKYFGTTIED 58

Query: 72 LLDLPFSDGRTTEKKEK 88
          +      +        K
Sbjct: 59 VFIFEDENRGDGNNVSK 75


>gi|8920259|emb|CAB96432.1| hypothetical protein [Mycobacterium avium subsp.
          paratuberculosis]
          Length = 146

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S +    AI  + E  + + + LA   G+     +  +R       R P   ++ KI  
Sbjct: 1  MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGA-----RKPHKSTVQKIEN 55

Query: 64 ATN 66
             
Sbjct: 56 GLG 58


>gi|332702150|ref|ZP_08422238.1| Cupin 2 conserved barrel domain protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552299|gb|EGJ49343.1| Cupin 2 conserved barrel domain protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 5/116 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              +K+   I    ER NL+   LA+++GL     N  +   +     +PS   + K+  
Sbjct: 1   MKSEKLGARIRTYRERKNLSRDELAQRSGLSLDIINALEEQDL-----YPSLGPLLKVTR 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           A    +   +D   S      +K++    L       G          G     + 
Sbjct: 56  ALGLRLGTFMDDAGSTDPLVVRKDQRKQGLAMHTPRHGEALRFYSLGKGKADRHME 111


>gi|332286204|ref|YP_004418115.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp.
           T7-7]
 gi|330430157|gb|AEC21491.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp.
           T7-7]
          Length = 194

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 41/178 (23%), Gaps = 20/178 (11%)

Query: 20  HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD 79
             LT   LA K+G      +K +          P   S+ +I  A    +      P   
Sbjct: 3   RGLTLDALAEKSGFTKGYLSKLENGKST-----PPIASLARIARALGHDLNYFFVDP--- 54

Query: 80  GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTR 139
               ++   E                     +G  ++ V +                   
Sbjct: 55  -GEPQQGSDESLHALVSVVHHWERKPITRGGSGFGYDYVSL--AHKKARKHMEPFIFTFP 111

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMS 197
            +    +        + + + S          +      + V K      G S+   S
Sbjct: 112 SEVDIDTYFEH-PGEEFVYIMSGE--------VEFQIKINGVLKRWTLEPGDSLYFES 160


>gi|325264752|ref|ZP_08131481.1| toxin-antitoxin system, antitoxin component, Xre family
           [Clostridium sp. D5]
 gi|324030044|gb|EGB91330.1| toxin-antitoxin system, antitoxin component, Xre family
           [Clostridium sp. D5]
          Length = 130

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R  +  ++T   LA+   +   +++  +        R P  + + KI    N 
Sbjct: 5   QLVANLARYRKARHMTQKELAKMLNISRQAYSNYETG-----KRTPDIDLLLKISQIYNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           T+ QL++ PFS   T  +++          S    +  +        +
Sbjct: 60  TLDQLINQPFSPDGTIREQKGPYQSGVELLSADTIYLTAEEVSILKGY 107


>gi|323142483|ref|ZP_08077303.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT
           12067]
 gi|322413060|gb|EFY03959.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT
           12067]
          Length = 141

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 24/107 (22%), Gaps = 5/107 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I     R  LT   +A   GL     +  +    +         +I  +    + +
Sbjct: 10  IGLRIKAARARKGLTQGNIANLTGLSTPHISNIETGNTK-----LGLPTIIHLANVLDVS 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           + +LL             E    +            +          
Sbjct: 65  VDELLCDNIHHSEQIYCNELADLVKDCSVDELHIISELAKVIKKAGI 111


>gi|313633472|gb|EFS00296.1| signal peptidase I [Listeria seeligeri FSL N1-067]
 gi|313638162|gb|EFS03418.1| signal peptidase I [Listeria seeligeri FSL S4-171]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                 SM+P     D +I+N    V+  D ++ +   G    K +I   G +++  + 
Sbjct: 34  ILVDGISMMPTLHNDDRVIINRFGHVDRFDVIVFRENDGKEYIKRVIGLPGDTVEYKAD 92


>gi|313898654|ref|ZP_07832189.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956538|gb|EFR38171.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 1  MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M   +    ++ +AI +  +R  +T   LA   G    S +       +     P  + +
Sbjct: 1  MKKVTEINLRVGDAIRKGLQRKGMTQKELAALVGSTQRSISSYINGNAQ-----PPLDIL 55

Query: 59 FKILAATNETICQLLDLPFSDGR 81
            I       + Q+L +P  +  
Sbjct: 56 SLICRILEINMNQILQIPDFNFP 78


>gi|307273981|ref|ZP_07555191.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0855]
 gi|306509289|gb|EFM78349.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0855]
          Length = 71

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 15/47 (31%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
            + R  +    + + LA+K  +     +  +      +     T S
Sbjct: 5  SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKTLS 51


>gi|294146600|ref|YP_003559266.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292677017|dbj|BAI98534.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 236

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 6/51 (11%), Positives = 17/51 (33%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
           + + E + R+     ++ + L+ + G    +    +      R       S
Sbjct: 124 EGLGERLLRLRHEKGMSRTALSERTGFSKPTIWGWETGRTTPRRENLRILS 174


>gi|291444821|ref|ZP_06584211.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291347768|gb|EFE74672.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 213

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + +A+        ++ + LAR+AG+     +K +  G       P    + + + 
Sbjct: 101 DLGQAVYDRRTALGISQTELARRAGMTQPQVSKLELGGTV--PTVPLLARLARAME 154


>gi|289434555|ref|YP_003464427.1| Signal peptidase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170799|emb|CBH27341.1| sipZ [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                 SM+P     D +I+N    V+  D ++ +   G    K +I   G +++  + 
Sbjct: 34  ILVDGISMMPTLHNDDRVIINRFGHVDRFDVIVFRENDGKEYIKRVIGLPGDTVEYKAD 92


>gi|283768986|ref|ZP_06341892.1| DNA-binding protein [Bulleidia extructa W1219]
 gi|283104343|gb|EFC05720.1| DNA-binding protein [Bulleidia extructa W1219]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 43/140 (30%), Gaps = 12/140 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I ++  +++LT   LA +  L     ++ +R         PS +S+  +  A   
Sbjct: 3   NIGARIKQLRLKNDLTLEELASRTELTKGFLSQLERNRT-----SPSIQSLADVAEALGV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKE------IPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
            +         +    ++++        + + +  P+      +       + + +  + 
Sbjct: 58  NLSGFFQEDVEEQIVFQEEDAFVDEQEGMKIFWIVPNAQKNVMEPIRLVIESGYQSKVLE 117

Query: 122 EIRSPHNGIYAIQTQDTRHK 141
                    Y +  +     
Sbjct: 118 P-HEGEELGYVLNGRIHVVT 136


>gi|270291165|ref|ZP_06197388.1| predicted protein [Pediococcus acidilactici 7_4]
 gi|270280561|gb|EFA26396.1| predicted protein [Pediococcus acidilactici 7_4]
          Length = 114

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            ++  I + I ++ +   LT   LA K+ L     ++ +R   +      S ++I  I 
Sbjct: 1  MSANINIGKLIKQVRKESGLTQEELAEKSDLSVNFISRIERTDNQ----NISWKNIEAIA 56

Query: 63 AATNETICQLLDLPFSDGRT 82
           A   +  +LL +  +  + 
Sbjct: 57 EALGLSTIELLQVNENRQQH 76


>gi|240850354|ref|YP_002971747.1| hypothetical protein Bgr_07660 [Bartonella grahamii as4aup]
 gi|240267477|gb|ACS51065.1| hypothetical protein Bgr_07660 [Bartonella grahamii as4aup]
          Length = 110

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 1/97 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M+S   K I + +++            LA   G+  ++ ++       G++R  S   + 
Sbjct: 1  MSSNIEKSIRQWLEKKLNERGHGAQIELAAHLGIHQSTISRMINPYKNGKSRSISIGELV 60

Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          KI    NE      +    +     +   E       
Sbjct: 61 KIAEFFNEPPPNFFNDVDQEFMNFYRDLSEENKRDVI 97


>gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
           14365]
          Length = 198

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H  I   I  + +   LT   L+R+  L  +  ++ +R          S  S+FK+  A 
Sbjct: 133 HASIGRNIRELRKTRGLTLKQLSRRTNLSVSLLSQIERAESSA-----SVSSLFKVATAL 187

Query: 66  NETICQ 71
           +  I +
Sbjct: 188 DVPITE 193


>gi|210613654|ref|ZP_03289813.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787]
 gi|210151084|gb|EEA82092.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +++   I    E+  ++   LA   G+   +    +    E +      E +F+I    
Sbjct: 13 QEVGRKIRHYREKKKMSQLELAEAIGVTQNTIYLIETAQSEMK-----LEKLFRIAEVL 66


>gi|126735060|ref|ZP_01750806.1| DNA binding protein, putative [Roseobacter sp. CCS2]
 gi|126715615|gb|EBA12480.1| DNA binding protein, putative [Roseobacter sp. CCS2]
          Length = 282

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 3/103 (2%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +    ++  +T S LAR+A +D ++ ++  +   +   R P+ + +    A    +  
Sbjct: 12  ARLQAGMKQAGITQSALARQAQVDRSTLSQLIK---DDGARLPNGQLVAACAAVLGVSAD 68

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
            LL L     +  +     I +     +       +       
Sbjct: 69  WLLGLSDLPEQAQDLVANAISMTQAQRALVDEKIFAWHQEAEG 111


>gi|254235322|ref|ZP_04928645.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719]
 gi|126167253|gb|EAZ52764.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719]
          Length = 193

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               +++   + R+  + NL+   LAR +G+      + +          PS + + KI 
Sbjct: 7   DLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSV-----PSIKVLCKIA 61

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                ++   LD     G      ++   L+    + +          
Sbjct: 62  QGLKVSVAAFLDDRAFAGVAVLPAQQSKRLVSADGAFTSRALFPFDVA 109


>gi|118463481|ref|YP_879341.1| helix-turn-helix domain-containing protein [Mycobacterium avium
          104]
 gi|118164768|gb|ABK65665.1| helix-turn-helix domain protein [Mycobacterium avium 104]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S +    AI  + E  + + + LA   G+     +  +R       R P   ++ KI  
Sbjct: 1  MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGA-----RKPHKSTVQKIEN 55

Query: 64 ATN 66
             
Sbjct: 56 GLG 58


>gi|29377418|ref|NP_816572.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|29344885|gb|AAO82642.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
          Length = 316

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 5/86 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + +  N+T   L+ + G+  ++ N+ +    E     P  E+  K+      + 
Sbjct: 1  MNRLKELRKEKNITLVELSEELGIPRSTLNRYENEDSE-----PKQETWEKLADYYGVST 55

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYF 95
            L+ +        +       +   
Sbjct: 56 AYLMGISNQKVSEEKALTAAKKVYQV 81


>gi|163938942|ref|YP_001643826.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163861139|gb|ABY42198.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|86140990|ref|ZP_01059549.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis
          MED217]
 gi|85832932|gb|EAQ51381.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis
          MED217]
          Length = 66

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  +     +T S LA++  +   + N  ++   +     PS  + F++ A  N +I 
Sbjct: 3  NNIKELRAALKMTQSDLAQQIEVSRQTVNAIEKGKFD-----PSLPTAFRLAAVFNCSIE 57

Query: 71 QLLDLPF 77
          +L     
Sbjct: 58 ELFVYES 64


>gi|325478503|gb|EGC81616.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 129

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  + E   L+   LA+   +   + ++ +    + R R  + + + K L  T+
Sbjct: 7  LKELREIKKLSQEDLAKLCQVSTKTISRYELGQSKPRYRK-TYDLLAKHLDTTH 59


>gi|325298403|ref|YP_004258320.1| helix-turn-helix domain-containing protein [Bacteroides
          salanitronis DSM 18170]
 gi|324317956|gb|ADY35847.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM
          18170]
          Length = 120

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 16/38 (42%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           E +    +   +T   LA + G D +  ++ ++   +
Sbjct: 59 GEVLRDRRKALGITQKELAERIGRDRSYISRLEKGETD 96


>gi|317472617|ref|ZP_07931934.1| hypothetical protein HMPREF1011_02284 [Anaerostipes sp. 3_2_56FAA]
 gi|316899903|gb|EFV21900.1| hypothetical protein HMPREF1011_02284 [Anaerostipes sp. 3_2_56FAA]
          Length = 369

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       +   + +  +   +T   LA   G+   S +K +         +P    + +
Sbjct: 1   MKEL---NLSNILVKKRKEKGITQDQLAAYIGVSKASVSKWETGQS-----YPDITFLPQ 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           + A  N ++ +L+       +   +K        F    +   F+  
Sbjct: 53  LAAYFNMSVDELIGYKPQMTKEDIRKLYLRLAKDFSQKPAKEVFEEC 99


>gi|307592445|ref|YP_003900036.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306986090|gb|ADN17970.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 67

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          ++ E+  LT   +A + G+   + +  +      + R  ST+ + K+      ++  
Sbjct: 11 KLREKAGLTQRQVANELGVTDQTVSNWETGQR--KPRLSSTQWL-KLCQLFQCSLED 64


>gi|302386036|ref|YP_003821858.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302196664|gb|ADL04235.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 204

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E + ++ +++NLT   LA +  +  T+ +K +         +P+ ES+  I      +I 
Sbjct: 5  EKLQQLRKQNNLTQEQLAEQLYVSRTAVSKWESGKG-----YPNIESLKCISKVFAVSID 59

Query: 71 Q 71
          +
Sbjct: 60 E 60


>gi|256782955|ref|ZP_05521386.1| transcriptional regulatory protein [Streptomyces lividans TK24]
 gi|289766838|ref|ZP_06526216.1| transcriptional regulatory protein [Streptomyces lividans TK24]
 gi|289697037|gb|EFD64466.1| transcriptional regulatory protein [Streptomyces lividans TK24]
          Length = 739

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
           R+ E   LT + +A+  G+   S    +    E   R    E+  ++L   +        
Sbjct: 33  RLREAAGLTQAAVAQALGVRVASIQAWETGRAE--PRAERIEAYRRLLEGLSRRFPASAV 90

Query: 75  LPFSDGRTTEKKE 87
            P S         
Sbjct: 91  PPGSSEAAPRPDP 103


>gi|261822660|ref|YP_003260766.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261606673|gb|ACX89159.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 154

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +  E +  +     ++    A + G   +  ++ +R G        S ++I  
Sbjct: 1  MKKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 55

Query: 61 ILAATNETICQ 71
          +  A +    Q
Sbjct: 56 LANALSVEPWQ 66


>gi|228909080|ref|ZP_04072909.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200]
 gi|228850588|gb|EEM95413.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200]
          Length = 108

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             I  + ++  +T   LA    L  ++    +R       R P   ++ +I    + +
Sbjct: 5  GNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNE-----RQPDYNTLIRIADYFDVS 58


>gi|227512467|ref|ZP_03942516.1| hypothetical protein HMPREF0497_1589 [Lactobacillus buchneri ATCC
          11577]
 gi|227522692|ref|ZP_03952741.1| hypothetical protein HMPREF0519_0401 [Lactobacillus hilgardii
          ATCC 8290]
 gi|227084292|gb|EEI19604.1| hypothetical protein HMPREF0497_1589 [Lactobacillus buchneri ATCC
          11577]
 gi|227090140|gb|EEI25452.1| hypothetical protein HMPREF0519_0401 [Lactobacillus hilgardii
          ATCC 8290]
          Length = 67

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +    ++  L+ + LA K+G+  ++ +  +R         P+  ++ K+  A N T  +L
Sbjct: 6  LRFFRDKQKLSQTDLAVKSGVKQSTISSIERGV------DPTGRTLRKLAQALNVTTDEL 59

Query: 73 LDLPF 77
          L++  
Sbjct: 60 LNMKE 64


>gi|213031130|emb|CAR31467.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 158

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          I + I  + + H+LT    AR  G+   S ++ +     
Sbjct: 2  IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSS 40


>gi|218781485|ref|YP_002432803.1| XRE family transcriptional regulator [Desulfatibacillum
          alkenivorans AK-01]
 gi|218762869|gb|ACL05335.1| transcriptional regulator of molybdate metabolism, XRE family
          [Desulfatibacillum alkenivorans AK-01]
          Length = 372

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+   +  I   + +  +   ++ + LA   G+   +    +          P+T    K
Sbjct: 1  MSK-QNDSISCKVKQYRQEAGVSQAQLADLVGVKRQAIYDIESGKY-----LPNTGVALK 54

Query: 61 ILAATN 66
          +     
Sbjct: 55 LARHLG 60


>gi|159043770|ref|YP_001532564.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157911530|gb|ABV92963.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 468

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +      T + +A+  G+ P   N  +        R  S + +  +    N  
Sbjct: 6  VGPRLRALRRERKQTQAEMAQALGVSPAYVNLLENNQ-----RSLSVQMLMALTETYNVD 60

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
             L+    +   T  +   + P+     
Sbjct: 61 WRDLVKDDAATQLTDLRHAMQDPVFTDAA 89


>gi|153931215|ref|YP_001382744.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935772|ref|YP_001386295.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|168177684|ref|ZP_02612348.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|170758347|ref|YP_001785679.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|226947573|ref|YP_002802664.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|152927259|gb|ABS32759.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931686|gb|ABS37185.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|169405336|gb|ACA53747.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|182671289|gb|EDT83263.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|226844325|gb|ACO86991.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 181

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I E I  + +  NLT   L+ K GL  +  ++ +           +  S+ KI  A N
Sbjct: 3   NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSS-----SLAITSLKKIADALN 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I      P       +K+E+E  +     S S     SG F      + + V      
Sbjct: 58  VPITYFFKSPELHKFLVKKQERE--VFELEGSSSKFIRLSGNFTERAMESILVVIPAEKQ 115

Query: 127 HNGIYAIQTQDTRHKTQD 144
           H   ++   ++  +  + 
Sbjct: 116 HGHKFSHPGEEFIYVLEG 133


>gi|73540702|ref|YP_295222.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia
           eutropha JMP134]
 gi|72118115|gb|AAZ60378.1| Helix-turn-helix motif [Ralstonia eutropha JMP134]
          Length = 129

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 5/134 (3%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT  + ++    + R+ +R   +   L+ ++GL  +  +  +R       R  +  +I  
Sbjct: 1   MTKHTLREFGLHLARLRKRRGWSQETLSLESGLARSYLSGIERG-----KRNLALLNICM 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +         ++LD           +E          +            +  + + V  
Sbjct: 56  LADTLGVPPSEMLDFEIQGSSALHVEEPRSVFGNAQNAAIEATLRHMAELSEAEVDLVAA 115

Query: 121 PEIRSPHNGIYAIQ 134
                   G Y + 
Sbjct: 116 MVRALARKGSYRLD 129


>gi|39997131|ref|NP_953082.1| transcriptional regulator [Geobacter sulfurreducens PCA]
 gi|39984021|gb|AAR35409.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA]
          Length = 124

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             + ++ E   ++ + LAR AG+ P +  + +R            E+  KIL A   ++ 
Sbjct: 63  NNVKKIREERLMSKAELARLAGVSPATIERIERGE------ECRMETKRKILLALGFSLS 116

Query: 71  Q 71
           +
Sbjct: 117 E 117


>gi|148548763|ref|YP_001268865.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148512821|gb|ABQ79681.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 184

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 44/173 (25%), Gaps = 14/173 (8%)

Query: 3   SFSHKKI---WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
              H++I      I  + +   LT   LA++ G      ++ +R         P+   + 
Sbjct: 1   MKVHEEIEGLAVLIRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSR-----PTVADLT 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            I      +      L          +  E   L+     +       +    +  ++  
Sbjct: 56  AISEELGVSTAYFYKLDKPRELDWVTRPHERRTLHLAGGITDVLASPSITGAFSMLDSHL 115

Query: 120 VPEIRSPHNGI-YAIQTQDTRHKTQ-----DTSMLPLYRKGDILILNSAIQVN 166
            P   S    +  + +      + +       +        D   L    +  
Sbjct: 116 QPGASSGEEYLDDSSEQGCFVLEGELTVWLGDAEPVTLHANDSFQLQPHARFR 168


>gi|317126051|ref|YP_004100163.1| helix-turn-helix domain protein [Intrasporangium calvum DSM
          43043]
 gi|315590139|gb|ADU49436.1| helix-turn-helix domain protein [Intrasporangium calvum DSM
          43043]
          Length = 138

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M+      +   +    E   L+   LA  AG+     ++ +R       + PS E + +
Sbjct: 1  MSRL--PDLGAYLREQRENAQLSLRQLAEIAGISNPYLSQIERG-----LKKPSAEILQQ 53

Query: 61 ILAATNET 68
          I      +
Sbjct: 54 IAKGLEVS 61


>gi|302379982|ref|ZP_07268461.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
 gi|302312208|gb|EFK94210.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
          Length = 67

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I    +   L+   LA+  G+   S    +   I      P+ E+ +KI    N+ 
Sbjct: 5  IENRIAEFRKELGLSQHRLAKAVGMKRRSIMAYENNTI-----SPTLETAYKICKVLNKD 59

Query: 69 ICQLLDLP 76
          I ++    
Sbjct: 60 IKEVFIFK 67


>gi|255292005|dbj|BAH90488.1| XRE family transcriptional regulator [uncultured bacterium]
 gi|255292866|dbj|BAH89966.1| transcriptional regulator [uncultured bacterium]
 gi|255292956|dbj|BAH90054.1| XRE family transcriptional regulator [uncultured bacterium]
 gi|255293226|dbj|BAH90316.1| XRE family transcriptional regulator [uncultured bacterium]
          Length = 96

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            A+  +     ++   LA  AG++ +   K +R         P+   IFKI  A + + 
Sbjct: 26 GAAVRALRIERGISQESLAHLAGIERSHMGKVERGE-----HMPTLAVIFKIARALDCST 80

Query: 70 CQLLDLPFSDGRTTEK 85
            L+    +    +E 
Sbjct: 81 AVLMAETENQIAASET 96


>gi|228994652|ref|ZP_04154474.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM
          12442]
 gi|228765084|gb|EEM13816.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM
          12442]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 18/36 (50%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43
          ++   + ++ + HN + + LA K  +   + +K + 
Sbjct: 19 ELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWEN 54


>gi|229000364|ref|ZP_04159924.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17]
 gi|228759391|gb|EEM08377.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 18/36 (50%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43
          ++   + ++ + HN + + LA K  +   + +K + 
Sbjct: 19 ELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWEN 54


>gi|16519701|ref|NP_443821.1| transcription regulator; symbiotic plasmid stability locus
           [Sinorhizobium fredii NGR234]
 gi|2496605|sp|P55411|Y4DL_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator
           y4dL
 gi|7465606|pir||T02775 y4dL protein - Rhizobium sp. plasmid pNGR234a
 gi|2182355|gb|AAB91641.1| transcription regulator; symbiotic plasmid stability locus
           [Sinorhizobium fredii NGR234]
          Length = 196

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 5/108 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + +    E   ++   L+ ++GL  +  ++ +R  +E     P   S+  +  A +
Sbjct: 6   EHITQQLRAAREAQKMSQRELSARSGLTQSHISQIERGTME-----PGLGSLVDVARALD 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
             I           R           +               F     
Sbjct: 61  LEIVLAPKKLMPAIRNILDSASASSDVLTSDQRKLVGRLERWFAQHRG 108


>gi|163941533|ref|YP_001646417.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163863730|gb|ABY44789.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 123

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + ++ + +NLT   L +K  L  ++ +  +        R P  +++ K       +
Sbjct: 2  IGENLRKLRKTNNLTMKDLGKKLNLAESTISGYENGN-----RKPDYDTLNKFADFFEVS 56


>gi|223933356|ref|ZP_03625344.1| protein of unknown function DUF955 [Streptococcus suis 89/1591]
 gi|330833524|ref|YP_004402349.1| hypothetical protein SSUST3_1750 [Streptococcus suis ST3]
 gi|223898006|gb|EEF64379.1| protein of unknown function DUF955 [Streptococcus suis 89/1591]
 gi|329307747|gb|AEB82163.1| protein of unknown function DUF955 [Streptococcus suis ST3]
          Length = 385

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 14  DRMAERH---NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           DR+ E     + + S LA   G+     +K ++   +     PS+E + KI+      + 
Sbjct: 8   DRLRESRYFRHYSISQLAENVGVSKQMISKYEKNLSK-----PSSEVLQKIIFELKFPLS 62

Query: 71  QLLDLPFSDGRTTEKKEKEI-PLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                            +            S     +         + V  P++    + 
Sbjct: 63  FYQTKDKFITTDLGTFYRSKLTSSQTEKKSSEMLKKALALLANFFEDYVDFPKLAEFESH 122

Query: 130 IYAIQTQ 136
             A   +
Sbjct: 123 ENASPEE 129


>gi|116628909|ref|YP_814081.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC
          33323]
 gi|311111276|ref|ZP_07712673.1| putative transcriptional regulator [Lactobacillus gasseri MV-22]
 gi|116094491|gb|ABJ59643.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
          33323]
 gi|311066430|gb|EFQ46770.1| putative transcriptional regulator [Lactobacillus gasseri MV-22]
          Length = 334

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++ + I  + +++NL+  GLA K  +   + +K +          P  E I  +     
Sbjct: 2  RLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSI-----PDIEKIVNLSELFG 55


>gi|315182632|gb|ADT89545.1| transcriptional regulator, HTH_3 family [Vibrio furnissii NCTC
           11218]
          Length = 207

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 13/177 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I  +  +  +T    +++ GL  ++ +K +   I      P+ +++ K+      
Sbjct: 27  KLGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLQI 81

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + QL + P     +  +   +                          N   +P      
Sbjct: 82  DMPQLFEPPKKIMASGRRDVTKKGQ----GKPHPTQTYEHELLATQLSNKKMMPFKSRVR 137

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVA 182
              +         +      L +     +        V    GD +      G ++ 
Sbjct: 138 ARAFEEYGD--WVRHDGEEFLLILEGEVMFYSEFYEPVLLAEGDSVYYDANMGHMLV 192


>gi|312865715|ref|ZP_07725939.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311098836|gb|EFQ57056.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 116

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  +     LT   +A K  +    + +++  G     R PS+E++ K     + +
Sbjct: 4  ERLKSLRLEAGLTQKEIATKLNMTQPQYARTENGG-----RKPSSETLNKFAEFFDVS 56


>gi|293402557|ref|ZP_06646692.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304071|gb|EFE45325.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 173

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          E I  + +   L+   LA K  +   + +K +      
Sbjct: 4  ENIKAIRKAKGLSQEELAIKLNVVRQTISKWENGLSVP 41


>gi|271969826|ref|YP_003344022.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270513001|gb|ACZ91279.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + E +  +        S  AR+AG+ P   ++ +R   E     PS+E I  +  A 
Sbjct: 31 LGERLRGLRHERGEKLSETARRAGVSPQYLSEMERGVKE-----PSSEMIAAVAGAL 82


>gi|260770117|ref|ZP_05879050.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260615455|gb|EEX40641.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 207

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 13/177 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I  +  +  +T    +++ GL  ++ +K +   I      P+ +++ K+      
Sbjct: 27  KLGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLQI 81

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + QL + P     +  +   +                          N   +P      
Sbjct: 82  DMPQLFEPPKKIMASGRRDVTKKGQ----GKPHPTQTYEHELLATQLSNKKMMPFKSRVR 137

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVA 182
              +         +      L +     +        V    GD +      G ++ 
Sbjct: 138 ARAFEEYGD--WVRHDGEEFLLILEGEVMFYSEFYEPVLLAEGDSVYYDANMGHMLV 192


>gi|297570524|ref|YP_003691868.1| transcriptional regulator, XRE family [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296926439|gb|ADH87249.1| transcriptional regulator, XRE family [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 105

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            I   +    +   LT   L  K GL  +  ++ +   ++   R  S   + + L 
Sbjct: 3  DDIVRKLRAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDM--RLSSFLEMARFLD 57


>gi|228969787|ref|ZP_04130551.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228789939|gb|EEM37757.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 184

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 19/52 (36%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           + + I    +   LT   LA  A + P+  ++ ++       +     S+ 
Sbjct: 5  NVGQKIKAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVA 56


>gi|227819136|ref|YP_002823107.1| HTH-type transcriptional regulator y4dL [Sinorhizobium fredii
          NGR234]
 gi|227338135|gb|ACP22354.1| putative HTH-type transcriptional regulator y4dL [Sinorhizobium
          fredii NGR234]
          Length = 196

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + I + +    E   ++   L+ ++GL  +  ++ +R  +E     P   S+  +  A 
Sbjct: 6  EHITQQLRAAREARKMSQRELSARSGLTQSHISQIERGTME-----PGLGSLVDVARAL 59


>gi|226323100|ref|ZP_03798618.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758]
 gi|225208290|gb|EEG90644.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758]
          Length = 316

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          KI + I    +   LT   LA K  +   S +K +R  
Sbjct: 5  KIGKYIAEKRKALGLTQKQLAEKLNMSDKSVSKWERGI 42


>gi|219667464|ref|YP_002457899.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219537724|gb|ACL19463.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 113

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ E + +  ER  +T   LA   G+   + +  ++             ++  I      
Sbjct: 7  RVAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTN-----SIDISTLLNICNFLEI 61

Query: 68 TICQLLDLPFSDGRT 82
           +  +  +       
Sbjct: 62 NLDDIYGISDKKISP 76


>gi|193083797|gb|ACF09480.1| inosine-5'-monophosphate dehydrogenase [uncultured marine
           crenarchaeote KM3-47-D6]
          Length = 178

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 40/163 (24%), Gaps = 9/163 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESIFKILAATNE 67
            E I    ++ N+T   LA   G+  +  N+ +    +          ES+ K+   T+ 
Sbjct: 5   LETIKEERKKLNMTQKKLAAMTGVSTSMINQIESGRCQPSYSTAKKIFESLAKLEGQTST 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-----FPTGNKWNTVGVPE 122
                +        T     +E        +                            +
Sbjct: 65  RKAGDICSEKIVRLTPSNTIREAGKKMHEKTIDQIPIFDEDGLKGLITIDIVNEYTERKD 124

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
           I+  +         D        S L        +++    ++
Sbjct: 125 IKIKNVMNPKPPIIDFEFPANALSQLTRISGC--VLVEKNSKI 165


>gi|172057905|ref|YP_001814365.1| signal peptidase I [Exiguobacterium sibiricum 255-15]
 gi|171990426|gb|ACB61348.1| signal peptidase I [Exiguobacterium sibiricum 255-15]
          Length = 179

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 130 IYAIQTQDTR-HKTQDTSMLPLYRKGDILILNSA----IQVNCGDRLLIKPRTGDIVAKV 184
            + I+T           SM+P     D +I+N       +   GD ++          K 
Sbjct: 18  AFIIRTFLFVPVIVDGESMMPTLHNSDRMIVNKVPYYFNEPERGDIVVFHATETRDYIKR 77

Query: 185 LISRRGRSID 194
           +I+  G ++ 
Sbjct: 78  VIAVPGDTMY 87


>gi|169351117|ref|ZP_02868055.1| hypothetical protein CLOSPI_01896 [Clostridium spiroforme DSM 1552]
 gi|169292179|gb|EDS74312.1| hypothetical protein CLOSPI_01896 [Clostridium spiroforme DSM 1552]
          Length = 171

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 141 KTQDTSMLPLYRKGDILILN----SAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRS 192
           K   TSMLP Y +G+I++++       +    D +++           + K ++   G  
Sbjct: 37  KVYGTSMLPTYHEGNIVLVDKVFYKHNEPKRNDIVVVDYKDANMKETFIIKRVVGIGGDH 96

Query: 193 IDLMSLNCCY 202
           I++   N  Y
Sbjct: 97  IEIK-DNELY 105


>gi|94968151|ref|YP_590199.1| XRE family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550201|gb|ABF40125.1| transcriptional regulator, XRE family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 338

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           FS   +   I  +     L+   LA++ GL        +          P    +  I  
Sbjct: 217 FSQNIVGSRIRELRLEAGLSLGDLAKRVGLTEQGLQNIEENV--DTISNPGLTVLRWIAT 274

Query: 64  ATNETICQ 71
           A   T+ +
Sbjct: 275 ALKTTVAE 282


>gi|206563935|ref|YP_002234698.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198039975|emb|CAR55953.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 185

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 38/151 (25%), Gaps = 14/151 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  + +   +T + LA + G      ++ +R         P+   +  I  A        
Sbjct: 14  IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 68

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--------TGNKWNTVGVPEIR 124
             L          +  E   +Y+    +       +           G   ++   P   
Sbjct: 69  YSLSKPRSVPWVTRPDERRTVYYAAGITDILVSPNMRSRFSILESHLGPGASSGERPVDD 128

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
           S   G + ++ +                  D
Sbjct: 129 SDEQGGFVLEGEL-TIWIDGDDTPVTLGPND 158


>gi|84616894|emb|CAJ13788.1| hypothetical protein dmi50 [Desulfococcus multivorans]
          Length = 69

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 18/42 (42%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   E +  + ++  L+   LA + G+  ++ N+ +      
Sbjct: 6  ENFAETVKEVRQQLGLSQEELAHELGVSFSTINRWENRKTVP 47


>gi|47567915|ref|ZP_00238622.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus
           G9241]
 gi|47555393|gb|EAL13737.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus
           G9241]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 30/135 (22%), Gaps = 6/135 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ +   L+   LA K      + +K +         +P TE +  I      ++
Sbjct: 4   GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L    ++          +           G   S     G     +           
Sbjct: 59  -DYLLKETAEKSNENVDGYYVSQEMAEGYIVYGQKISKYIALGFSLLILSTIPYLLFKED 117

Query: 130 IYAIQTQDTRHKTQD 144
                          
Sbjct: 118 ATMSTFLVIIIAVLG 132


>gi|294102727|ref|YP_003554585.1| transcriptional regulator, XRE family [Aminobacterium colombiense
          DSM 12261]
 gi|293617707|gb|ADE57861.1| transcriptional regulator, XRE family [Aminobacterium colombiense
          DSM 12261]
          Length = 114

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +++ I +  + +  +  LT   +A    +D +  +K ++       R  S + + K  
Sbjct: 1  MLNYELIGQRFNELRSKSGLTQGQMAAYLDVDQSYISKCEKNE-----RQFSIDILEKAA 55

Query: 63 AATNET 68
          +     
Sbjct: 56 SLFGCP 61


>gi|268610104|ref|ZP_06143831.1| hypothetical protein RflaF_11484 [Ruminococcus flavefaciens FD-1]
          Length = 119

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I +  +  +++ + LA +A +     +K +    +          + +I  A   +
Sbjct: 11 IGERIKQARKELDISQTELAERADISVPYLSKIEMGKSD-----FGVSVLIRISEALQIS 65


>gi|229173997|ref|ZP_04301534.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3]
 gi|228609506|gb|EEK66791.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+       +   ++        F            
Sbjct: 56  YFNISIDKLICYTPQMEQEAIRELYHRLAEAFSEEPFDEVMIEC 99


>gi|257784647|ref|YP_003179864.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
 gi|257473154|gb|ACV51273.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
          Length = 142

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + + H+ +   LA   G+   + +K +          P  E   +       TI 
Sbjct: 5  ENLVELRKYHDFSQEELADMIGVSRQTLSKYETGES-----LPDIEKCKRFANVFGVTID 59

Query: 71 QLLDLP 76
           L+   
Sbjct: 60 DLISYD 65


>gi|300362438|ref|ZP_07058614.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03]
 gi|300353429|gb|EFJ69301.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03]
          Length = 95

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I  + +++NL+  GLA K  +   + +K +          P  E I  +      
Sbjct: 2  RLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSI-----PDIEKIVNLSELFGV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          T   LL           +   +   L  
Sbjct: 57 TTDYLLKSGEPSFELKNEDINDKDKLPI 84


>gi|212223696|ref|YP_002306932.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1]
 gi|212008653|gb|ACJ16035.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1]
          Length = 190

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I R+ +   +T   LA KAG+      K +   ++     P   +  +IL A  E     
Sbjct: 13  IRRIRKELGITQEELAEKAGVTQAYIAKLEAGKVD-----PRLSTFNRILQALLECKKAQ 67

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           L             +    +       +           GN
Sbjct: 68  LRAKDVMSSPVISVKPYESVENVIRIMNDHNISQIPVIAGN 108


>gi|126697922|ref|YP_001086819.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|254974024|ref|ZP_05270496.1| putative transcriptional regulator [Clostridium difficile
           QCD-66c26]
 gi|255091410|ref|ZP_05320888.1| putative transcriptional regulator [Clostridium difficile CIP
           107932]
 gi|255099524|ref|ZP_05328501.1| putative transcriptional regulator [Clostridium difficile
           QCD-63q42]
 gi|255305380|ref|ZP_05349552.1| putative transcriptional regulator [Clostridium difficile ATCC
           43255]
 gi|255313070|ref|ZP_05354653.1| putative transcriptional regulator [Clostridium difficile
           QCD-76w55]
 gi|255515827|ref|ZP_05383503.1| putative transcriptional regulator [Clostridium difficile
           QCD-97b34]
 gi|255648919|ref|ZP_05395821.1| putative transcriptional regulator [Clostridium difficile
           QCD-37x79]
 gi|260682132|ref|YP_003213417.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260685730|ref|YP_003216863.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|306519034|ref|ZP_07405381.1| putative transcriptional regulator [Clostridium difficile
           QCD-32g58]
 gi|115249359|emb|CAJ67173.1| Transcriptional regulator, RmlC-type [Clostridium difficile]
 gi|260208295|emb|CBA60727.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260211746|emb|CBE02080.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 183

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 55/159 (34%), Gaps = 10/159 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S  ++ I E + ++ +  +L+   +A+ +G+  +  ++ ++  +      P+  ++ K
Sbjct: 1   MQSL-NEIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCEVN-----PTISTLKK 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I      +   L++   SD    +   K     +   +G    +    F +  ++    +
Sbjct: 55  ITNGLKISFTSLMERQESDIELIQ---KSDIDHFIEDNGKYISYPIFPFDSKRRFEIFMI 111

Query: 121 PEIRSPHNGIYA-IQTQDTRHKTQDTSMLPLYRKGDILI 158
                 +    A +             +       D ++
Sbjct: 112 EIEEGGNLDSNAELPGTQEFITVFSGEVTIKINGEDYIV 150


>gi|46019834|emb|CAE52358.1| putative transcriptional regulator [Streptococcus thermophilus]
          Length = 113

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  + ++ N T   +A K G+   ++   +R   +     P+ +++ +I    N +
Sbjct: 5  ERLKELRKKANFTQVEVAEKLGISQPAYASWERGVKK-----PTQDNLVRIAQILNVS 57


>gi|49183978|ref|YP_027230.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|227816122|ref|YP_002816131.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684]
 gi|254682796|ref|ZP_05146657.1| hypothetical protein BantC_02950 [Bacillus anthracis str.
          CNEVA-9066]
 gi|254740143|ref|ZP_05197835.1| hypothetical protein BantKB_03819 [Bacillus anthracis str. Kruger
          B]
 gi|49177905|gb|AAT53281.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|227003523|gb|ACP13266.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684]
          Length = 92

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + S LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|37527570|ref|NP_930914.1| hypothetical protein plu3706 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|37527578|ref|NP_930922.1| hypothetical protein plu3715 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787005|emb|CAE16079.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787013|emb|CAE16087.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 120

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  + +   LT   LA  AG+      + +    +     P+ E I ++  +   +  
Sbjct: 5   ERLTTLRKERGLTQQALADMAGVAVLQIRRYEGGSAQ-----PTLEVIRRLAISLGVSAD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
            L+      G +   + +   +   P      
Sbjct: 60  MLVFDEQERGPSERLRYQFEAISRMPQYEQEV 91


>gi|83951416|ref|ZP_00960148.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
 gi|83836422|gb|EAP75719.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
          Length = 219

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  + +   LT   LA   GL     ++ +R         PS  ++F+I  A   +
Sbjct: 28  LGEEIRNLRKARRLTLGALAEATGLSTGFISQIERAQNR-----PSVTALFRISRALGVS 82

Query: 69  ICQLLDLPFSDGRTTEKK 86
           +      P          
Sbjct: 83  VSWFFPGPEVPDSGAPDP 100


>gi|322834304|ref|YP_004214331.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
 gi|321169505|gb|ADW75204.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
          Length = 182

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + + R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N  
Sbjct: 8   ISKGLVRERQRAGLSLAEVARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVALNIP 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
             +L++   +  +   + E    +       +
Sbjct: 63  FARLMEPEVNKMQVIRRGEGPAVVAELADYKA 94


>gi|310818410|ref|YP_003950768.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309391482|gb|ADO68941.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 270

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  +     L+   LA++ G+     ++ +  G++         +I + L      +
Sbjct: 2  GATLRLLRVEAGLSLRDLAKRIGVSSAYLSRVE-HGLDAVPTPARISAIARELDIPPTLL 60

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPSG 99
            +         +  ++E E   L+   + 
Sbjct: 61 MDVAHRVSPFMASYLEQEPEAGQLFLEIAQ 90


>gi|310827692|ref|YP_003960049.1| hypothetical protein ELI_2103 [Eubacterium limosum KIST612]
 gi|308739426|gb|ADO37086.1| hypothetical protein ELI_2103 [Eubacterium limosum KIST612]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 5/36 (13%), Positives = 15/36 (41%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          E + R+     ++   LA +  +   + +K ++   
Sbjct: 5  ENLRRIRRERGISQEELAEQLKVSRQAVSKWEQGNG 40


>gi|304314800|ref|YP_003849947.1| transcriptional regulator [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588259|gb|ADL58634.1| predicted transcriptional regulator [Methanothermobacter
           marburgensis str. Marburg]
          Length = 190

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             + E I ++ +  N+T   LA ++G++     K +   I      PS   + KI     
Sbjct: 4   NTVGERIKQLRDNQNITLEELAERSGVNRELIKKIEEGDI-----LPSLTPLIKISRTLG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
             +  LLD    D     +K K   +++F          +  F +
Sbjct: 59  VRLGTLLDDRVQDEPVIVRKGKTQRVIHFSGYEESADTSNLNFHS 103


>gi|295694886|ref|YP_003588124.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
 gi|295410488|gb|ADG04980.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
          Length = 195

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I + +  +      T   +A   G+      + +R         P+  +++KI      
Sbjct: 10 RIGQILRSLRRDRGWTLDKMAAVTGVSKPMLGQIERGESN-----PTVVTLWKIATGLGV 64

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
               L  P         + ++  +
Sbjct: 65 PFSTFLRDPDDPRVAIVPQSRQPGV 89


>gi|291542133|emb|CBL15243.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63]
          Length = 108

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  +   ++++ + LA K  L  ++ +K ++   +      + +++ +I + T + +  
Sbjct: 6  RLKELRVDNDMSQTELAEKLNLKASAISKYEKGITQ--PSIDTLKNLAEIFSVTVDYLIG 63

Query: 72 LLDLPFSDGRTTEKKEKEIPLLYFPP 97
          + D+      +     +   + +F  
Sbjct: 64 MSDIKNPYSNSQITPNEADLIEHFRQ 89


>gi|270260961|ref|ZP_06189234.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044445|gb|EFA17536.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 189

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 47/136 (34%), Gaps = 7/136 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS------TESIFKI 61
           ++ + +  + +R + +   LA++ G+   + ++ +R          +        ++ ++
Sbjct: 11  RLAQRLSDLRQRQSWSLEELAQQTGISRATLSRVERAETSPTASLLNKLCSAYGLTMSRL 70

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
           L+   +   +LL                   +  P +     F  G    G +      P
Sbjct: 71  LSEVEDEPPELLRREQQPVWVDRASGFHRRSVSPPAALFKAEFIEGRLEAGAEIAY-DAP 129

Query: 122 EIRSPHNGIYAIQTQD 137
            + +  + ++ ++ + 
Sbjct: 130 SVHALEHHLWLLEGRL 145


>gi|229074788|ref|ZP_04207803.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18]
 gi|229096338|ref|ZP_04227311.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29]
 gi|229115293|ref|ZP_04244702.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3]
 gi|228668125|gb|EEL23558.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3]
 gi|228687298|gb|EEL41203.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29]
 gi|228708300|gb|EEL60458.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + ++ E    +   +A+K G+   +  K +         +P  +++  +    N T
Sbjct: 3  IGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNVT 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93
          + +L+    S        E+E    
Sbjct: 58 LDELIKGNQSFKEKIHIDEEEADFE 82


>gi|261856219|ref|YP_003263502.1| XRE family transcriptional regulator [Halothiobacillus
          neapolitanus c2]
 gi|261836688|gb|ACX96455.1| transcriptional regulator, XRE family [Halothiobacillus
          neapolitanus c2]
          Length = 135

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               +I   +     R  L+ S +A   G+   S    ++ G       P+ E+I  + 
Sbjct: 1  MQKRLQIGARLKEERTRLRLSQSEIADSLGVSRRSVIDWEKGGAT-----PNAENISDLY 55

Query: 63 AA 64
            
Sbjct: 56 DF 57


>gi|182438568|ref|YP_001826287.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467084|dbj|BAG21604.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 283

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/179 (10%), Positives = 39/179 (21%), Gaps = 29/179 (16%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +    E   LT   LA  A +  +     +        R PS E   ++  A     
Sbjct: 6   GEWLKAQREAAGLTQQELADLAFMTRSHIAHIEAG-----RRMPSGEDAQRLDRALGTGN 60

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                                     P +   G          +      +    +    
Sbjct: 61  VLTSFR--------------------PGAEDDGVLADYFSAARHLEQQATMIREFALSFL 100

Query: 130 IYAIQTQDTRHKTQDTSMLPLYR-KGDILILNSAIQVNCGDRL---LIKPRTGDIVAKV 184
              +QT+         +  P    + D  ++    +          ++     +   + 
Sbjct: 101 PGILQTEAYARTVLGMAFPPPSPTECDKAVVARLKRAEIFQGARAPVVWAILDESSLRR 159


>gi|209886139|ref|YP_002289996.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
 gi|209874335|gb|ACI94131.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
          Length = 485

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +     R+ ++ NL+ + +A   GL P+  N  +R       R  + + + ++    +  
Sbjct: 13 VGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQ-----RPVTAQMLLRLAETYDLD 67

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
          +  L             +    PL
Sbjct: 68 LRDLATSDEDRFFAELNEIFSDPL 91


>gi|197120438|ref|YP_002132389.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170287|gb|ACG71260.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
          Length = 134

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          H ++   + R      LT   LA + G+  +  +  +R         P   ++ K+ 
Sbjct: 37 HFRLAAQVLRRRRELGLTQKQLAGRVGIHQSEISDIERGAAT-----PGYRTLAKLA 88


>gi|121636380|ref|YP_976603.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224988852|ref|YP_002643539.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|121492027|emb|CAL70490.1| Probable transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224771965|dbj|BAH24771.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
          Length = 474

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  ++ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102


>gi|114326843|ref|YP_744000.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1]
 gi|114315017|gb|ABI61077.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1]
          Length = 225

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   + R+ +R  +T + LA +A L     +K +          PS  ++  +  A N  
Sbjct: 44  IGAKVRRLRQRLGITAADLAVEADLSAGMLSKIENGST-----SPSLATLQALSRALNTP 98

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I             +         +    + +G  ++      G+           S   
Sbjct: 99  ISSFFSDFDERRDCSYVPAGMGLSIERRGTKAGHKYELLGHSLGSGLAVEPYLITLSKDA 158

Query: 129 GIY 131
             Y
Sbjct: 159 APY 161


>gi|92113205|ref|YP_573133.1| hypothetical protein Csal_1077 [Chromohalobacter salexigens DSM
           3043]
 gi|91796295|gb|ABE58434.1| conserved hypothetical protein [Chromohalobacter salexigens DSM
           3043]
          Length = 796

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)

Query: 101 GGFFDSGVFPTGNKWN-TVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL 159
                      G      +   E          +       +    SM      G   + 
Sbjct: 654 HVPVYDLSIAAGEFSEMQIAEAEHWVELPDFMRVSPDLFVSRVVGESMNRRIPNGAWCLF 713

Query: 160 NSAI-QVNCGDRLLIKPRTGD-------IVAKVLISRR--------GRSIDLMSLNCC-- 201
                    G  ++++ R  +          K+  S +         + I L        
Sbjct: 714 RMNPGGTRQGKVVVVQHRAIEDPDHGGSFTIKLYQSEKIEEYGEFVNQRIVLKPQTNAFG 773

Query: 202 YPVDTV--EMSDIEWIA 216
           Y    +  E+ D++ I 
Sbjct: 774 YKDIVLEDELEDLKVIG 790


>gi|91780190|ref|YP_555397.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91692850|gb|ABE36047.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 91

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            A+ R+ E    +   LA  AGL+ +   + +R          S  ++ K+  A   +I
Sbjct: 9  GAAVRRLRELQGWSQEQLAEYAGLNRSYVGEIERGSAIA-----SIVTVDKLARAFGVSI 63

Query: 70 CQ 71
            
Sbjct: 64 EC 65


>gi|31791644|ref|NP_854137.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|31617230|emb|CAD93337.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
           AF2122/97]
          Length = 474

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 25/102 (24%), Gaps = 5/102 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  ++ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                    +      ++      L                P
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHP 102


>gi|332362028|gb|EGJ39830.1| transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 158

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  + + H+LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2  IGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTS-----SVSTELIDIICQKFNVS 56

Query: 69 ICQLLDLPFSDGRTT 83
             ++          
Sbjct: 57 YVDIVGEDKMLNPVE 71


>gi|307571667|emb|CAR84846.1| HTH motif/peptidase domain protein [Listeria monocytogenes L99]
          Length = 208

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 21/218 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAAT 65
            + + +  +  +  L+      K GL      K +            PS E++ KI    
Sbjct: 7   DLGKELLNLRVKLGLSLREAKEKTGLSHNYIRKLELGFDPSTKTPIEPSVETLKKISLGY 66

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  +L+ L        + +     +  +                              
Sbjct: 67  GISFDKLMQLANYSSSIEKNEVIATKVPIYKTLHDMKSKKE---------------TNDF 111

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                  +       +  + S+   +    +L+L        G+ +L+   +  I+   +
Sbjct: 112 RLYKQELVSKNAILVEVSNPSLS-KFNSNSLLLLEPYEDSFKGELVLLTTDS-KIIIGHI 169

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
                + + L  +       T++  D+  I +I+   Q
Sbjct: 170 NLFNDKELQLKPI-DSESTVTIKK-DLIMIWKIVEVIQ 205


>gi|304392640|ref|ZP_07374580.1| transcriptional regulator [Ahrensia sp. R2A130]
 gi|303295270|gb|EFL89630.1| transcriptional regulator [Ahrensia sp. R2A130]
          Length = 197

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 49/174 (28%), Gaps = 8/174 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I ++ +  +LT + LA + G      ++ +R         PS + +  + AA +  
Sbjct: 19  LGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLS-----SPSIDDLRALAAAFDVP 73

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR-SPH 127
           I         +        +            G   +      G ++  +       +  
Sbjct: 74  ISWFFATEPLNEAERGTVMRADYRRQLGSREGGLVEELLSPDLGGQYEMLRCEFAAGAEM 133

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIV 181
                 +T+++    +    L +   G    L +        +       G+  
Sbjct: 134 EKPVLRETEESGFIVEGELDLWI--DGTHFHLETGDSFRFDHKPYRWANRGETT 185


>gi|299134624|ref|ZP_07027816.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298590434|gb|EFI50637.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 485

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +     R+ ++ NL+ + +A   GL P+  N  +R       R  + + + ++    +  
Sbjct: 13 VGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQ-----RPVTAQMLLRLAETYDLD 67

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
          +  L             +    PL
Sbjct: 68 LRDLATSDEDRFFAELNEIFSDPL 91


>gi|288574560|ref|ZP_06392917.1| transcriptional regulator, XRE family [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288570301|gb|EFC91858.1| transcriptional regulator, XRE family [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 134

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           I  + E   +T   LA KA +  T     +     G  + PS + + K+        
Sbjct: 29 RIKLLRESLGMTQLELAEKADISRTYVQALE-----GNRKTPSVKLLGKLGDILKVDP 81


>gi|288916300|ref|ZP_06410679.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288352279|gb|EFC86477.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 393

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 7/134 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   + ++  R N+T   LA ++G+      + ++    G  +  +  ++ + L    
Sbjct: 2   DDVGTRLAQVRRRRNMTQEELAERSGVSADVIRRLEQGRRSG-AQLRTLGALARALDVRT 60

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             +                   ++  + FP  G+ G       P G    T  +      
Sbjct: 61  SDLLSQDTELDHFDNGDTATLLDVRRILFPAFGTDG------IPDGAPSTTEDLQVRIDR 114

Query: 127 HNGIYAIQTQDTRH 140
               Y         
Sbjct: 115 VRAGYDSGDYHVTL 128


>gi|284920570|emb|CBG33632.1| regulatory protein cro (antirepressor) [Escherichia coli 042]
          Length = 71

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + S     E + +      +T + LA KAG+   S    +    + R R+    ++  
Sbjct: 1  MQTLS-----ERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK-RPRFLFEIAMAL 54

Query: 61 ILAATN 66
                
Sbjct: 55 NCDPVW 60


>gi|257875354|ref|ZP_05655007.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257809520|gb|EEV38340.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 396

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R  ++  +T   LA    +   S +K +         +P   S+  + A  + +
Sbjct: 5  IGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQS-----YPDITSLPLLAAYFDCS 59

Query: 69 ICQ 71
          + +
Sbjct: 60 VDE 62


>gi|257865722|ref|ZP_05645375.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257872057|ref|ZP_05651710.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257799656|gb|EEV28708.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257806221|gb|EEV35043.1| transcriptional regulator [Enterococcus casseliflavus EC10]
          Length = 396

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R  ++  +T   LA    +   S +K +         +P   S+  + A  + +
Sbjct: 5  IGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQS-----YPDITSLPLLAAYFDCS 59

Query: 69 ICQ 71
          + +
Sbjct: 60 VDE 62


>gi|239998665|ref|ZP_04718589.1| putative phage associated protein [Neisseria gonorrhoeae 35/02]
 gi|240013798|ref|ZP_04720711.1| putative phage associated protein [Neisseria gonorrhoeae DGI18]
 gi|240116013|ref|ZP_04730075.1| putative phage associated protein [Neisseria gonorrhoeae PID18]
 gi|240117623|ref|ZP_04731685.1| putative phage associated protein [Neisseria gonorrhoeae PID1]
 gi|240125430|ref|ZP_04738316.1| putative phage associated protein [Neisseria gonorrhoeae
          SK-92-679]
 gi|260440861|ref|ZP_05794677.1| putative phage associated protein [Neisseria gonorrhoeae DGI2]
          Length = 89

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
           +  +   T S LA  AGL     ++ +        +    +++ K+  A   +  ++  
Sbjct: 23 SLRMKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 77

Query: 75 LPFSDGRTT 83
                   
Sbjct: 78 AFERRYEYM 86


>gi|228986400|ref|ZP_04146536.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773221|gb|EEM21651.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/189 (9%), Positives = 50/189 (26%), Gaps = 14/189 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +   +T   LA   G+   S +K +         +P    +  + +  N +
Sbjct: 6   IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNVS 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I +L+           K         F                   ++   +        
Sbjct: 61  IDELICYTPQMEPEDIKDLYHRLAEAFSERPFEEVMIECRGMIKKYYSCFPL------LL 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187
            +  +              + +  +   L      +    D  L+ +  +      ++++
Sbjct: 115 QMGLLFINHHMLTEDTDKRIEMLEEAMHLFSRVQEE--SDDVSLVKEAVSFQATCYLILN 172

Query: 188 RRGRSIDLM 196
           +    + L+
Sbjct: 173 KPNEVLQLL 181


>gi|240112583|ref|ZP_04727073.1| putative phage associated protein [Neisseria gonorrhoeae MS11]
 gi|240121380|ref|ZP_04734342.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1]
 gi|240123181|ref|ZP_04736137.1| putative phage associated protein [Neisseria gonorrhoeae PID332]
 gi|254493390|ref|ZP_05106561.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|268598654|ref|ZP_06132821.1| predicted protein [Neisseria gonorrhoeae MS11]
 gi|268601681|ref|ZP_06135848.1| predicted protein [Neisseria gonorrhoeae PID18]
 gi|268603326|ref|ZP_06137493.1| predicted protein [Neisseria gonorrhoeae PID1]
 gi|268681806|ref|ZP_06148668.1| predicted protein [Neisseria gonorrhoeae PID332]
 gi|268684027|ref|ZP_06150889.1| predicted protein [Neisseria gonorrhoeae SK-92-679]
 gi|291044182|ref|ZP_06569894.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398775|ref|ZP_06642943.1| phage associated protein [Neisseria gonorrhoeae F62]
 gi|226512430|gb|EEH61775.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|268582785|gb|EEZ47461.1| predicted protein [Neisseria gonorrhoeae MS11]
 gi|268585812|gb|EEZ50488.1| predicted protein [Neisseria gonorrhoeae PID18]
 gi|268587457|gb|EEZ52133.1| predicted protein [Neisseria gonorrhoeae PID1]
 gi|268622090|gb|EEZ54490.1| predicted protein [Neisseria gonorrhoeae PID332]
 gi|268624311|gb|EEZ56711.1| predicted protein [Neisseria gonorrhoeae SK-92-679]
 gi|291011899|gb|EFE03892.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610777|gb|EFF39884.1| phage associated protein [Neisseria gonorrhoeae F62]
          Length = 153

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
            +  +   T S LA  AGL     ++ +        +    +++ K+  A   +  ++  
Sbjct: 87  SLRMKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 141

Query: 75  LPFSDGRTT 83
                    
Sbjct: 142 AFERRYEYM 150


>gi|217963759|ref|YP_002349437.1| XRE family transcriptional regulator [Listeria monocytogenes HCC23]
 gi|217333029|gb|ACK38823.1| transcriptional regulator, xre family, putative [Listeria
           monocytogenes HCC23]
          Length = 204

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 21/218 (9%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF--GIEGRNRWPSTESIFKILAAT 65
            + + +  +  +  L+      K GL      K +            PS E++ KI    
Sbjct: 3   DLGKELLNLRVKLGLSLREAKEKTGLSHNYIRKLELGFDPSTKTPIEPSVETLKKISLGY 62

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRS 125
             +  +L+ L        + +     +  +                              
Sbjct: 63  GISFDKLMQLANYSSSIEKNEVIATKVPIYKTLHDMKSKKE---------------TNDF 107

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVL 185
                  +       +  + S+   +    +L+L        G+ +L+   +  I+   +
Sbjct: 108 RLYKQELVSKNAILVEVSNPSLS-KFNSNSLLLLEPYEDSFKGELVLLTTDS-KIIIGHI 165

Query: 186 ISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223
                + + L  +       T++  D+  I +I+   Q
Sbjct: 166 NLFNDKELQLKPI-DSESTVTIKK-DLIMIWKIVEVIQ 201


>gi|195977889|ref|YP_002123133.1| transcriptional Regulator Cro/CI family [Streptococcus equi
          subsp. zooepidemicus MGCS10565]
 gi|225868776|ref|YP_002744724.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus]
 gi|225870268|ref|YP_002746215.1| DNA-binding protein [Streptococcus equi subsp. equi 4047]
 gi|195974594|gb|ACG62120.1| transcriptional Regulator Cro/CI family [Streptococcus equi
          subsp. zooepidemicus MGCS10565]
 gi|225699672|emb|CAW93374.1| putative DNA-binding protein [Streptococcus equi subsp. equi
          4047]
 gi|225702052|emb|CAW99663.1| putative DNA-binding protein [Streptococcus equi subsp.
          zooepidemicus]
          Length = 71

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +  +  R  +  + +A  AG+   + +  +R         PS     KI    NE
Sbjct: 4  RLRNRLKELRARDGINQTQMAALAGVSRQTISLIERNEYT-----PSIIIAMKIAKVFNE 58

Query: 68 TICQLLDLPF 77
           I Q+  L  
Sbjct: 59 PIEQVFSLVE 68


>gi|261409180|ref|YP_003245421.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|329929091|ref|ZP_08282884.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
 gi|261285643|gb|ACX67614.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10]
 gi|328936874|gb|EGG33306.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
          Length = 139

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 7   KKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           ++I    +  M E    + + LA+ A +  +  ++ +          P  +++ K+  A 
Sbjct: 2   ERIFGSYLKEMRENKGWSINQLAQAADISGSQISRIENGLRG----IPKPQTLRKMAEAL 57

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                +L++      +   K E+     +        F           ++ V +
Sbjct: 58  EVPYEELMNKAGYLQQDAAKHEEIPAPAWATSRDKRDFKKMLEDDGELMFDGVPL 112


>gi|167747793|ref|ZP_02419920.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662]
 gi|167653155|gb|EDR97284.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662]
          Length = 352

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 8/120 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E I  +  +  LT   +A   G+   + NK ++             ++ ++L     
Sbjct: 2   KINEMIRELRIKKGLTQEQMASLLGVSAPAVNKWEKAVS--YPDITLLPALARLLET--- 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
               L  L       T+++  +          S G   +                +    
Sbjct: 57  ---DLNTLLSFKEEPTKEEITDFLNELAADVSSNGAEHAFHMGMEKVREYPSCDPLILNV 113


>gi|163841767|ref|YP_001626172.1| Cro/CI family transcriptional regulator [Renibacterium
          salmoninarum ATCC 33209]
 gi|162955243|gb|ABY24758.1| transcriptional regulator, Cro/CI family [Renibacterium
          salmoninarum ATCC 33209]
          Length = 79

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 3  SFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               +I  +I  +   H  +T + LA + G+   +    ++         PS E  F+I
Sbjct: 1  MVKPTRISNSIRGLRFSHGEMTQAELAERIGVTRQTIIAIEQGKY-----SPSLEVAFQI 55

Query: 62 LAATNETICQLLDLPFSD 79
                 +  +   P + 
Sbjct: 56 AGILQVRLEDVFHYPGTQ 73


>gi|163758095|ref|ZP_02165183.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43]
 gi|162284384|gb|EDQ34667.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43]
          Length = 478

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             I R+     LT + +A   G+ P+  N  +R       R  + + I K+
Sbjct: 9  GPRIRRIRNAKGLTQTAMAEALGISPSYLNLIERNQ-----RPLTVQLILKL 55


>gi|154496374|ref|ZP_02035070.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC
           29799]
 gi|150274457|gb|EDN01534.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC
           29799]
          Length = 307

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/109 (9%), Positives = 26/109 (23%), Gaps = 6/109 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR------NRWPSTESIFKIL 62
           + + I  +     L+  GL  K G+   + +K +  G                 ++  +L
Sbjct: 3   LGQKIQTLRHDAGLSQEGLGEKLGVSRQAISKWEADGAVPEVDKLIALSRLFEVNLHDLL 62

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
                +  +  +          +   E                  +   
Sbjct: 63  QVEGTSREEPEESGEQPPEEAAENPLEKDQPPRRNGRWWKALCVVLAAA 111


>gi|118587226|ref|ZP_01544654.1| transcriptional regulator, helix-turn-helix XRE-family
          [Oenococcus oeni ATCC BAA-1163]
 gi|118432368|gb|EAV39106.1| transcriptional regulator, helix-turn-helix XRE-family
          [Oenococcus oeni ATCC BAA-1163]
          Length = 143

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +    +R+ L+   +A+K  +   + +  ++          S + + KI   TN  
Sbjct: 3  IGQKLQEQRQRNGLSQQQVAQKLNVTRQTVSSWEKDRTIPDPN--SLKKLSKIYHETNIL 60

Query: 69 ICQLLDLP 76
            Q  +  
Sbjct: 61 DTQKDNKN 68


>gi|37912891|gb|AAR05227.1| predicted transcriptional regulators [uncultured marine
          proteobacterium ANT32C12]
          Length = 65

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +     L+ S LA    +   + N  +    +     PS     K+       + 
Sbjct: 3  NRLKELRADRELSQSALAEILSVSRQTVNSIENGKFD-----PSLTLAIKLTHYFEMPLD 57

Query: 71 QLLDLPF 77
          ++     
Sbjct: 58 KIFTYQE 64


>gi|59800915|ref|YP_207627.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090]
 gi|194098219|ref|YP_002001274.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
 gi|268594519|ref|ZP_06128686.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|59717810|gb|AAW89215.1| hypothetical protein, putative phage associated protein [Neisseria
           gonorrhoeae FA 1090]
 gi|193933509|gb|ACF29333.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
 gi|268547908|gb|EEZ43326.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
          Length = 145

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 15  RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
            +  +   T S LA  AGL     ++ +        +    +++ K+  A   +  ++  
Sbjct: 79  SLRMKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 133

Query: 75  LPFSDGRTT 83
                    
Sbjct: 134 AFERRYEYM 142


>gi|37528594|ref|NP_931939.1| hypothetical protein plu4779 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36788032|emb|CAE17151.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 97

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H ++ E +    E+  LT + +A + G+ P + ++ ++          S E I K  +  
Sbjct: 32 HIQLQEEMRSWREQAGLTSAQVAERMGVKPPTISRLEKNADRA-----SIERILKYASVC 86

Query: 66 N 66
           
Sbjct: 87 G 87


>gi|41057317|ref|NP_958215.1| gene 40 protein [Enterobacteria phage Sf6]
 gi|191165481|ref|ZP_03027322.1| conserved domain protein [Escherichia coli B7A]
 gi|194429702|ref|ZP_03062219.1| conserved domain protein [Escherichia coli B171]
 gi|291281105|ref|YP_003497923.1| gene 40 protein [Escherichia coli O55:H7 str. CB9615]
 gi|300898213|ref|ZP_07116569.1| helix-turn-helix protein [Escherichia coli MS 198-1]
 gi|331678335|ref|ZP_08379010.1| repressor protein CI [Escherichia coli H591]
 gi|132193|sp|P03036|RCRO_BP434 RecName: Full=Regulatory protein cro; AltName: Full=Antirepressor
 gi|230833|pdb|3CRO|L Chain L, The Phage 434 CroOR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION
 gi|230834|pdb|3CRO|R Chain R, The Phage 434 CroOR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION
 gi|157834420|pdb|1ZUG|A Chain A, Structure Of Phage 434 Cro Protein, Nmr, 20 Structures
 gi|157834766|pdb|2CRO|A Chain A, Structure Of Phage 434 Cro Protein At 2.35 Angstroms
          Resolution
 gi|14989|emb|CAA23908.1| unnamed protein product [Phage 434]
 gi|215174|gb|AAA32245.1| cro [Enterobacteria phage lambda]
 gi|33334196|gb|AAQ12229.1| gene 40 protein [Shigella phage Sf6]
 gi|190904404|gb|EDV64112.1| conserved domain protein [Escherichia coli B7A]
 gi|194412261|gb|EDX28566.1| conserved domain protein [Escherichia coli B171]
 gi|290760978|gb|ADD54939.1| gene 40 protein [Escherichia coli O55:H7 str. CB9615]
 gi|300358090|gb|EFJ73960.1| helix-turn-helix protein [Escherichia coli MS 198-1]
 gi|324019901|gb|EGB89120.1| helix-turn-helix protein [Escherichia coli MS 117-3]
 gi|325497800|gb|EGC95659.1| gene 40 protein [Escherichia fergusonii ECD227]
 gi|331074795|gb|EGI46115.1| repressor protein CI [Escherichia coli H591]
          Length = 71

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + S     E + +      +T + LA KAG+   S    +    + R R+    ++  
Sbjct: 1  MQTLS-----ERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK-RPRFLFEIAMAL 54

Query: 61 ILAATN 66
                
Sbjct: 55 NCDPVW 60


>gi|331018707|gb|EGH98763.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +    + H      LA   G +  + ++ +R         P+ + + K+  A   +
Sbjct: 8  IGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGT-----PNLDHLVKLCVALKIS 62

Query: 69 ICQLLDLPFSDGRTTEKK 86
            +LL             
Sbjct: 63 PAELLPADGISSSREHLP 80


>gi|322392180|ref|ZP_08065642.1| transcriptional regulator [Streptococcus peroris ATCC 700780]
 gi|321145080|gb|EFX40479.1| transcriptional regulator [Streptococcus peroris ATCC 700780]
          Length = 74

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 5/63 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA   G+   +    +          PS E   KI 
Sbjct: 1  MAKESKIITNLKSIRESTGMTQQELADLIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AAT 65
             
Sbjct: 56 QVF 58


>gi|229157204|ref|ZP_04285284.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342]
 gi|228626268|gb|EEK83015.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 6/135 (4%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + ++ +   L+   LA K      + +K +         +P TE +  I      ++
Sbjct: 4   GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVSL 58

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L    ++    ++    +           G   S     G     +           
Sbjct: 59  -DYLLKENAEQSNEKENGYYVSKEMAEGYIVYGQKISKYIALGFSLLILSTIPYLLFKED 117

Query: 130 IYAIQTQDTRHKTQD 144
           +              
Sbjct: 118 VTMSTFLVIIIAVFG 132


>gi|261856939|ref|YP_003264222.1| XRE family transcriptional regulator [Halothiobacillus
          neapolitanus c2]
 gi|261837408|gb|ACX97175.1| transcriptional regulator, XRE family [Halothiobacillus
          neapolitanus c2]
          Length = 184

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           + +   +  +  RH L+   LA++ G+   + +  +          PS  ++ +ILA  
Sbjct: 2  EQDVGFRLRLVRLRHQLSQRALAKRTGVAHATISLIESGRT-----SPSVSALKRILAGI 56

Query: 66 NETICQLL 73
            T+ +  
Sbjct: 57 PMTLGEFF 64


>gi|254250154|ref|ZP_04943474.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184]
 gi|124876655|gb|EAY66645.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184]
          Length = 242

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 38/151 (25%), Gaps = 14/151 (9%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I  + +   +T + LA + G      ++ +R         P+   +  I  A        
Sbjct: 71  IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSR-----PTVADLTAIGEALGVPTTYF 125

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP--------TGNKWNTVGVPEIR 124
             L          +  E   +Y+    +       +           G   ++   P   
Sbjct: 126 YSLSKPRSVPWVTRPDERRTVYYAAGITDILVSPNMRSRFSILESHLGPGASSGERPVDD 185

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGD 155
           S   G + ++ +                  D
Sbjct: 186 SDEQGGFVLEGEL-TIWIDGDDTPVTLGPND 215


>gi|123442353|ref|YP_001006332.1| putative DNA-binding phage-related protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332161719|ref|YP_004298296.1| putative DNA-binding phage-related protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122089314|emb|CAL12161.1| putative DNA-binding phage-related protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|318605784|emb|CBY27282.1| putative DNA-binding phage-related protein [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325665949|gb|ADZ42593.1| putative DNA-binding phage-related protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 107

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 8   KIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +I +A    +    +R NLT   +AR+AGL   + ++ ++  I      P+  ++ +  A
Sbjct: 33  QIRQAMMTELKAARQRCNLTQEDIARRAGLRKQNISRMEKGII-----SPNLTTLSRYAA 87

Query: 64  ATNETICQLLDLPFSDGRTT 83
           A   T               
Sbjct: 88  ALGGTFVFKFTQKPRCTSKE 107


>gi|91783405|ref|YP_558611.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91687359|gb|ABE30559.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 88

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            + ++ E+  L    +A + G   T  ++ +  G     R      +  +L A      
Sbjct: 16 ARLKQLREQRGLHQQAVAERLGRTQTYVSRYESGG-----RRLDLIELLDVLVALGADPH 70

Query: 71 QLLDLPFSDGRTTEKKEK 88
          + +D           + +
Sbjct: 71 EFIDRVLEQPLKALPRGQ 88


>gi|159184446|ref|NP_353767.2| hypothetical protein Atu0743 [Agrobacterium tumefaciens str. C58]
 gi|159139759|gb|AAK86552.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 264

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 36/147 (24%), Gaps = 15/147 (10%)

Query: 4   FSH--KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
            +H  + + + +     R  L+   LA +A +     +  +          PS E + K+
Sbjct: 1   MTHHREHVGQVLKEWRARRRLSQLDLAIEADISARHLSFVESGRS-----SPSREMLAKL 55

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
               +        L  + G      E+ +       +                   +  P
Sbjct: 56  AEQLSMPARAANRLMLAAGYAPVHSERSLDAPDMAAARQAVETVVHG--------HMPFP 107

Query: 122 EIRSPHNGIYAIQTQDTRHKTQDTSML 148
            +    +    +            S  
Sbjct: 108 ALAVDRHWNVVLANDAITSLLAGVSAE 134


>gi|325970790|ref|YP_004246981.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324026028|gb|ADY12787.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 91

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I +AI  +    N+T   L  +A L  +     +        R P   ++  I +A + +
Sbjct: 6  IGQAIKALRLAQNMTQEELIERADLSRSQLYYIESG-----KRTPRLPTMQSICSALSVS 60

Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91
            + +        T+        
Sbjct: 61 FLEFVLYLDQYSPTSCTPNISSM 83


>gi|314937137|ref|ZP_07844484.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80]
 gi|313655756|gb|EFS19501.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80]
          Length = 292

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 48/156 (30%), Gaps = 8/156 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S++ +++ + I  + ++  LT     +  G    +    ++         P+   + +
Sbjct: 7   MYSYNKEQVGKRIKSIRQQKGLTQESFGKLFGASKGNVATWEKGIS-----LPNASRLRE 61

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           I    + T+ +LL   F D     K     P        S       +    + +     
Sbjct: 62  IADLVSITVEELLYGEFVDNFQLVKLLNNNPNELENMIKSNIKAFFNLL---DDFEYYEY 118

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDI 156
             +       Y ++ Q+             Y++ D 
Sbjct: 119 TIVIPKSQRFYFVKLQNRILLAISLENKSTYQEKDN 154


>gi|313633469|gb|EFS00293.1| signal peptidase I [Listeria seeligeri FSL N1-067]
 gi|313638159|gb|EFS03415.1| signal peptidase I [Listeria seeligeri FSL S4-171]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 7/78 (8%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI--VAKVLISRRGRSIDLMS 197
                 SM P    G+ L +N        D ++      +     K +I   G  ++   
Sbjct: 36  VTVNGKSMDPTLHDGEHLFINKVSNPERFDIIVFPAPDEENAEYIKRVIGLPGDKVEYKQ 95

Query: 198 L----N-CCYPVDTVEMS 210
                N   Y    ++  
Sbjct: 96  DQLYINGKAYDEPYLDSE 113


>gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 185

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 5/77 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  + +   +T        GL  T  +K +        R P  ++  KI  +  +T
Sbjct: 96  IGARLKAIRKDEGMTQGEFGALVGLTHTGISKIETGH-----RTPEIKTALKIKRSLGKT 150

Query: 69  ICQLLDLPFSDGRTTEK 85
           +  +            +
Sbjct: 151 LDWIYFGDEEIIPKKNR 167


>gi|289434552|ref|YP_003464424.1| hypothetical protein lse_1187 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170796|emb|CBH27338.1| sipX [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 7/78 (8%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI--VAKVLISRRGRSIDLMS 197
                 SM P    G+ L +N        D ++      +     K +I   G  ++   
Sbjct: 36  VTVNGKSMDPTLHDGEHLFINKVSNPERFDIIVFPAPDEENAEYIKRVIGLPGDKVEYKQ 95

Query: 198 L----N-CCYPVDTVEMS 210
                N   Y    ++  
Sbjct: 96  DQLYINGKAYDEPYLDSE 113


>gi|257468163|ref|ZP_05632259.1| putative phage transposase [Fusobacterium ulcerans ATCC 49185]
 gi|317062448|ref|ZP_07926933.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
 gi|313688124|gb|EFS24959.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
          Length = 322

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 6/51 (11%), Positives = 25/51 (49%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           +++  A+++ ++   ++ S +A+  G+  ++ ++ +     G      T+
Sbjct: 2  REELMLALEQFSQERGMSYSKIAKAMGIGASTLSEIRSGKYNGETETIYTK 52


>gi|229828089|ref|ZP_04454158.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles
          DSM 14600]
 gi|229792683|gb|EEP28797.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles
          DSM 14600]
          Length = 327

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + +++  +   LA K  +   S +K +     G    P    I ++      +
Sbjct: 3  LADKIIDLRKKNGWSQEELAEKLDVSRQSVSKWE-----GARSVPDMNKILRLSEVFAVS 57


>gi|228478000|ref|ZP_04062611.1| conserved domain protein [Streptococcus salivarius SK126]
 gi|312862473|ref|ZP_07722716.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
 gi|322515930|ref|ZP_08068871.1| cro/CI family transcriptional regulator [Streptococcus
          vestibularis ATCC 49124]
 gi|228250180|gb|EEK09433.1| conserved domain protein [Streptococcus salivarius SK126]
 gi|311102116|gb|EFQ60316.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
 gi|322125604|gb|EFX96934.1| cro/CI family transcriptional regulator [Streptococcus
          vestibularis ATCC 49124]
          Length = 65

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + + + ++ + LA + G+   +    ++          S E  FKI     +TI ++
Sbjct: 5  IQELRKANKISQAELADEMGVTRQTIISLEKGRYNA-----SLELAFKIARYFGKTIEEV 59

Query: 73 LDLPF 77
               
Sbjct: 60 FIFEE 64


>gi|226322393|ref|ZP_03797911.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758]
 gi|225209193|gb|EEG91547.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758]
          Length = 109

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 5/87 (5%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
             +  +++ T   +A   G+  ++ +  +        R P  E++ KI    N  +  LL
Sbjct: 9   KNLRMQNHYTQGQMADLLGISRSAVSMYETGN-----REPDLETLEKIAKFFNVDMNYLL 63

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGS 100
               +      +   E           
Sbjct: 64  GSSVTVTSDNPEPSYEDIEQMIARGSH 90


>gi|218515232|ref|ZP_03512072.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 238

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 46/177 (25%), Gaps = 22/177 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++  +T + LA   G+     +K +   I      PS  ++  +  A    
Sbjct: 51  IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 105

Query: 69  ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +                         R   +   +  LL    +   G        T   
Sbjct: 106 LTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYNLLGHIDNNPSGVIVEPYLITLTA 165

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            + V           +Y ++ +          +  + + GD L  ++         +
Sbjct: 166 DSDVFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 219


>gi|215401114|ref|YP_002332369.1| repressor [Staphylococcus phage phiSauS-IPLA35]
 gi|215260465|gb|ACJ64595.1| gp6 [Staphylococcus phage phiSauS-IPLA35]
          Length = 84

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 2/71 (2%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K + E +  +    N+    LA   G+   + +   +       R    + +       
Sbjct: 7  RKILSENLQELMNDKNIDQRELAEAIGVSQPTVSNWIQQTK--YPRIKRIQQLADYFNVP 64

Query: 66 NETICQLLDLP 76
             I +     
Sbjct: 65 KSRITESKKRY 75


>gi|153953935|ref|YP_001394700.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219854549|ref|YP_002471671.1| hypothetical protein CKR_1206 [Clostridium kluyveri NBRC 12016]
 gi|146346816|gb|EDK33352.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219568273|dbj|BAH06257.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 179

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 55/173 (31%), Gaps = 13/173 (7%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ +  +++   LA +A L     ++ +R         PS  +++KI  A N +I   
Sbjct: 7   IRKLRQEKSISIEQLAERAKLSTGLISQVERNIT-----GPSVTTLWKIAKALNVSINYF 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            D          K +++  +L            +           +   E  +     + 
Sbjct: 62  FDEYEEKDNVVRKDKRKTIILPDSKITYELLSPNLKGKIEYLLVEIEAGECNTKDLICHE 121

Query: 133 IQTQDTR----HKTQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPRT 177
            +          K +  +   +  +GD +  +S +         ++++     
Sbjct: 122 GEECGYIIKGTLKVKLGNKEYILEEGDSIYFDSNVPHRYINVGNEKVISIWAM 174


>gi|326381819|ref|ZP_08203512.1| transcriptional regulator, XRE family protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199245|gb|EGD56426.1| transcriptional regulator, XRE family protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 125

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE--GRNRWPSTESIFKILAATNE 67
              +  + +   L+   LA + GL   + +  +R           P   +++++  A   
Sbjct: 19  GHRLVTVRKARGLSQEELAERCGLHRNAVSNLERATSNSASGIADPLLSTVYRLARALEV 78

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
               L+    S       +++    L    +
Sbjct: 79  PPTYLMPGADSRIGLRAAEQETNQALSEVEA 109


>gi|311897674|dbj|BAJ30082.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 247

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 5/108 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  +      T + LA KAG+D  S  +          R P   +      A  E + 
Sbjct: 4   ERLKAVMASGGWTCAALAEKAGVDTKSVERWANQN-----RTPRLGTARLAAEALGEDMF 58

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            L               + + L           F   +     + + +
Sbjct: 59  ALWPSLRQRRAARAISPELVALYEQRADLPVSVFVDLMAKATERIDVL 106


>gi|262283609|ref|ZP_06061374.1| cro/CI family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|262260666|gb|EEY79367.1| cro/CI family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 67

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            + ++ +   LT + LA+    + + + K +           S E+  K+     
Sbjct: 3  NRLKKLRKEKGLTQADLAKVLNTNQSRYGKYENGKTN-----LSIENAKKVAKYFG 53


>gi|302528605|ref|ZP_07280947.1| predicted protein [Streptomyces sp. AA4]
 gi|302437500|gb|EFL09316.1| predicted protein [Streptomyces sp. AA4]
          Length = 197

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 11/142 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   I R+     +T   LA + GL P   + ++R          S  S+F I  A   
Sbjct: 9   RVGAEIKRVRSSLGMTLRELAERCGLSPGFLSLAERGVN-----SISLTSLFAIAGALEV 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
              +LL       R      +             G  +  V         + V   R   
Sbjct: 64  DAVELLGSAGKRSRAEYAVSRRDD--PRAARVVMGEREHRVLTAELPDQHIEVLATRVNP 121

Query: 128 NGIYAI----QTQDTRHKTQDT 145
               +       ++  +     
Sbjct: 122 TNAPSPVTRHDGEEFCYVVSGE 143


>gi|296109709|ref|YP_003616658.1| transcriptional regulator, XRE family [Methanocaldococcus infernus
           ME]
 gi|295434523|gb|ADG13694.1| transcriptional regulator, XRE family [Methanocaldococcus infernus
           ME]
          Length = 307

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            E + R+ E   ++   LA   G+   +  K + +        PS +   KI    
Sbjct: 125 GETLKRVREEKKISVGELAEAVGVSRKTIYKYENYSAN-----PSVDIAIKIEEYL 175


>gi|257386498|ref|YP_003176271.1| XRE family transcriptional regulator [Halomicrobium mukohataei
          DSM 12286]
 gi|257168805|gb|ACV46564.1| transcriptional regulator, XRE family [Halomicrobium mukohataei
          DSM 12286]
          Length = 69

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I    E+  L+   LA   G+   + N  +R   + 
Sbjct: 5  IATYREQEGLSQGELAAAVGVSRQTINAVERERYDP 40


>gi|261346291|ref|ZP_05973935.1| transcriptional regulator, Cro/CI family [Providencia rustigianii
          DSM 4541]
 gi|282565603|gb|EFB71138.1| transcriptional regulator, Cro/CI family [Providencia rustigianii
          DSM 4541]
          Length = 99

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++KI   I        L+   LA    +     ++ +R          S E+I  +L A 
Sbjct: 4  NEKIGNFIRNARVSKGLSEKELASLISVSQQQISRYERGIST-----LSIENILILLNAL 58

Query: 66 NETICQL 72
          N    + 
Sbjct: 59 NIPFDEF 65


>gi|157147315|ref|YP_001454634.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895]
 gi|157084520|gb|ABV14198.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895]
          Length = 182

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I +++ R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A 
Sbjct: 8  IAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVAL 59


>gi|153812180|ref|ZP_01964848.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174]
 gi|149831835|gb|EDM86921.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174]
          Length = 208

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   + ++ +   +    LA    +   + ++ +          P    +  I    + 
Sbjct: 12 KIGNFLKKLRKEKGIIQEQLAEILNVSGRTVSRWETGNN-----MPDISILVDIADYYDI 66

Query: 68 TICQ 71
          +I +
Sbjct: 67 SIPE 70


>gi|145541473|ref|XP_001456425.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424236|emb|CAK89028.1| unnamed protein product [Paramecium tetraurelia]
          Length = 386

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 28/82 (34%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              K +   I  + ++HN+    LAR+ G+  ++ +   +   + R +  S     +I 
Sbjct: 1  MQIQKDLKSRIQEILQKHNIKQVDLAREIGIHHSTLSLWMQNKNKPRKQDISNSQSTRIE 60

Query: 63 AATNETICQLLDLPFSDGRTTE 84
                I            T +
Sbjct: 61 ELLERWIATFHANKGQGMGTGQ 82


>gi|146306349|ref|YP_001186814.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574550|gb|ABP84082.1| putative transcriptional regulator, XRE family [Pseudomonas
           mendocina ymp]
          Length = 106

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            E +  + E   L+P  LAR  G+ P      +R     R       S+   L     +
Sbjct: 50  LEQLQALREAKGLSPEALARSVGISPHYLAMIERGER--RPDAAILRSLAWTLGLEGWS 106


>gi|110598649|ref|ZP_01386915.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031]
 gi|110339761|gb|EAT58270.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031]
          Length = 129

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +   I R+ ++ NL+ + LA   G+   +F++ +R     R   P  + +  I    N
Sbjct: 68  DVGADIRRIRKKLNLSQAELASLFGVGKMAFSRYERGES--RPPVPLVKLLKLIDRHPN 124


>gi|29375148|ref|NP_814301.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|256852520|ref|ZP_05557895.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256964687|ref|ZP_05568858.1| CylR2 [Enterococcus faecalis HIP11704]
 gi|257085876|ref|ZP_05580237.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|307272302|ref|ZP_07553561.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|21693300|gb|AAM75247.1|AF454824_42 EF0042 [Enterococcus faecalis]
 gi|29342607|gb|AAO80372.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|256712067|gb|EEU27100.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256955183|gb|EEU71815.1| CylR2 [Enterococcus faecalis HIP11704]
 gi|256993906|gb|EEU81208.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|306511024|gb|EFM80035.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|315027717|gb|EFT39649.1| helix-turn-helix protein [Enterococcus faecalis TX2137]
          Length = 66

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +  + E+  ++ S LA    +   + N  ++         PS +   KI    +  
Sbjct: 2  IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYN-----PSLQLALKIAYYLDTP 56

Query: 69 ICQLLDLP 76
          +  +    
Sbjct: 57 LEDIFQWQ 64


>gi|37524551|ref|NP_927895.1| hypothetical protein plu0545 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|37525105|ref|NP_928449.1| hypothetical protein plu1137 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|37525114|ref|NP_928458.1| hypothetical protein plu1146 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36783975|emb|CAE12840.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784531|emb|CAE13431.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784540|emb|CAE13440.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 111

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          + + I  + +   LT + LA+   +   +    +      R +      I K+L
Sbjct: 4  LGQRISALRKHAGLTQAQLAQALNVSQQAVQSWEAGRR--RIQISVLPEIAKLL 55


>gi|15679328|ref|NP_276445.1| hypothetical protein MTH1328 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|3219928|sp|O27383|Y1328_METTH RecName: Full=Uncharacterized HTH-type transcriptional regulator
          MTH_1328
 gi|2622434|gb|AAB85806.1| conserved protein [Methanothermobacter thermautotrophicus str.
          Delta H]
          Length = 69

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I    +   LT   LA + G+   +    ++         PS     +I  A      + 
Sbjct: 5  IREHRKELGLTQEELAERVGVTRQTIIALEKGRY-----SPSLILAHRIARALGREHIED 59

Query: 73 LDLPF 77
          + +  
Sbjct: 60 IFILD 64


>gi|322433358|ref|YP_004210575.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321165747|gb|ADW71448.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 84

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  +      +   LA  AG+     +  +    E   R      + +I AA    
Sbjct: 21 LGERIYALITERGWSQKKLAELAGIHADYVHDVEYGKKEICLR-----MLARISAALGCK 75

Query: 69 ICQLLDLPF 77
          +  +L+   
Sbjct: 76 MSDMLEGME 84


>gi|296170451|ref|ZP_06852039.1| XRE family transcriptional regulator [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295894922|gb|EFG74643.1| XRE family transcriptional regulator [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 83

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 15/39 (38%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          ++ E + R           LA + G+   + ++ +R   
Sbjct: 13 ELGEHLRRARRARGFQQGELADRIGVTRMTISRLERGES 51


>gi|291523310|emb|CBK81603.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 336

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I    +++  +   LA + G+   + +K +  G       P  + I ++      +
Sbjct: 3  LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAV-----PDLQRILQMSELFCVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
             LL         T  +  E      
Sbjct: 58 TDYLLKDEMKAENITYHESSESYAEPL 84


>gi|291521732|emb|CBK80025.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 217

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I        LT   +A   G+   + +  +         +P   S+ K+    + 
Sbjct: 4  DIGCKIKEARIEKKLTQEQVAELLGVSRQTISNWENEKS-----YPDIISVIKMSECYDV 58

Query: 68 T 68
          +
Sbjct: 59 S 59


>gi|227524839|ref|ZP_03954888.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227087996|gb|EEI23308.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 89

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          A+    E   LT + LA +A +  ++  + +R          + + + +I  A  +T
Sbjct: 32 ALYHTREEAGLTQADLAERANVPQSTIARIERGDNV------TFDKLAEIAHAMGKT 82


>gi|222083000|ref|YP_002542365.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727679|gb|ACM30768.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 205

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 5/109 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H ++   +    +   +T   LA  A    +  +K +          PS   + +++   
Sbjct: 21  HGRLGTRLRLARQMLGMTLKALAVAADCSESLLSKIENGKA-----SPSLPMLHRLVEVL 75

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
              I  + +    +     +      +   P     G     + P    
Sbjct: 76  GTNIGWMFEEADGEEGIVFRAGTRPLIGLDPLRRGEGISLERIIPYSPG 124


>gi|189024717|ref|YP_001935485.1| Cro/CI family transcriptional regulator [Brucella abortus S19]
 gi|254689793|ref|ZP_05153047.1| transcriptional regulator, Cro/CI family protein [Brucella
          abortus bv. 6 str. 870]
 gi|254694283|ref|ZP_05156111.1| transcriptional regulator, Cro/CI family protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|254697936|ref|ZP_05159764.1| transcriptional regulator, Cro/CI family protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|254730827|ref|ZP_05189405.1| transcriptional regulator, Cro/CI family protein [Brucella
          abortus bv. 4 str. 292]
 gi|256045229|ref|ZP_05448127.1| transcriptional regulator, Cro/CI family protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|256114182|ref|ZP_05454936.1| transcriptional regulator, Cro/CI family protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|256258046|ref|ZP_05463582.1| transcriptional regulator, Cro/CI family protein [Brucella
          abortus bv. 9 str. C68]
 gi|189020289|gb|ACD73011.1| transcriptional regulator, Cro/CI family [Brucella abortus S19]
 gi|326409629|gb|ADZ66694.1| transcriptional regulator, Cro/CI family [Brucella melitensis
          M28]
          Length = 43

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          +   I R+     LT + +A   G+ P+  N  +R 
Sbjct: 8  VGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERN 43


>gi|94272166|ref|ZP_01292081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93450214|gb|EAT01505.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
          Length = 100

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            I + +    +   LT   L  K GL  +  ++ +   ++   R  S   + + L 
Sbjct: 2  DNIVKKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDM--RLSSFLEMARFLD 56


>gi|116628536|ref|YP_821155.1| transcriptional regulator [Streptococcus thermophilus LMD-9]
 gi|116101813|gb|ABJ66959.1| transcriptional regulator [Streptococcus thermophilus LMD-9]
 gi|312279170|gb|ADQ63827.1| Putative transcriptional regulator [Streptococcus thermophilus
          ND03]
          Length = 65

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + + + ++ + LA + G+   +    ++          S E  FKI     +TI ++
Sbjct: 5  IQELRKANKISQAELADEMGVTRQTIILLEKGRYNA-----SLELAFKIARYFGKTIEEV 59

Query: 73 LDLPF 77
               
Sbjct: 60 FIFEE 64


>gi|328945084|gb|EGG39239.1| transcriptional regulator [Streptococcus sanguinis SK1087]
          Length = 74

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MARESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|327191632|gb|EGE58643.1| putative transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 225

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 22/177 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++  +T + LA   G+     +K +   I      PS  ++  +  A    
Sbjct: 38  IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 92

Query: 69  ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +                         R   +   +  LL    + S G        T   
Sbjct: 93  LTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYNLLGHIDNNSSGVIVEPYLITLTA 152

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            + V           +Y ++ +          +  + + GD L  ++         +
Sbjct: 153 DSDVFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 206


>gi|317492341|ref|ZP_07950770.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316919680|gb|EFV41010.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 186

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 1  MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          MT  S H  I + +  + ++   +    A+  G+      + +R         P+  +++
Sbjct: 1  MTDLSLH--IGQTLRDLRQQRGWSLDKTAQATGVSKAMLGQIERGES-----SPTVVTLW 53

Query: 60 KILAATNETICQLLDLPFSDGRTT 83
          +I +    +  + L    +D    
Sbjct: 54 RISSGLQASFSEFLPKQLTDAEPA 77


>gi|297560612|ref|YP_003679586.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296845060|gb|ADH67080.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 272

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
          +  + + ++  +  LT   LA  A +  ++ +  +R   +G  R P
Sbjct: 13 RFGKLLRKLRGQAGLTQQELAALAVVSQSTVSDLERG-KKGTRRDP 57


>gi|325679879|ref|ZP_08159448.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324108317|gb|EGC02564.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 119

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I +  +  +++ + LA +A +     +K +    +          + +I  A   +
Sbjct: 11 IGERIKQARKELDISQTELAERADISVPYLSKIEMGKSD-----FGVSVLIRISEALQIS 65


>gi|268611514|ref|ZP_06145241.1| hypothetical protein RflaF_18676 [Ruminococcus flavefaciens FD-1]
          Length = 64

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 6/56 (10%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          E I     +  L+   LA KAG+   +    +        +  S  S  KI  A  
Sbjct: 7  EIIKARRMKLGLSQKELAEKAGVSANTVYNVETG------KSASLTSYKKICDALE 56


>gi|260888585|ref|ZP_05899848.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|330838124|ref|YP_004412704.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260861782|gb|EEX76282.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|329745888|gb|AEB99244.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 97

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              + I  AI       NLT   +A K G+     ++ +        R PS + + +  
Sbjct: 24 MEPERNIIRAIVEARIAQNLTQKEVAEKTGIAQAELSRMENG-----LRNPSIKLLQRFA 78

Query: 63 AATN 66
              
Sbjct: 79 EGLG 82


>gi|229165969|ref|ZP_04293734.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621]
 gi|228617522|gb|EEK74582.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|256825655|ref|YP_003149615.1| Peptidase S24-like protein [Kytococcus sedentarius DSM 20547]
 gi|256689048|gb|ACV06850.1| Peptidase S24-like protein [Kytococcus sedentarius DSM 20547]
          Length = 115

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 17/98 (17%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTG-----DIVAKV--LISRRGRSI 193
           +    SM P  R GD++++     V  G  ++ +   G      +  K        G ++
Sbjct: 7   RVAGRSMEPTLRPGDLVVVLHGAPVRPGRLVVCRLPDGPMGARPLGIKRAVCRRIDGGTV 66

Query: 194 --DLMSLNCCYPVDT-----VEMSDIEWIA--RI-LWA 221
              + S N     D+     V  +D+  +   R+  W 
Sbjct: 67  AWWVRSDNQDQGTDSRTFGAVPAADVLAVGLARVPRWV 104


>gi|225019958|ref|ZP_03709150.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum
          DSM 5476]
 gi|224947322|gb|EEG28531.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum
          DSM 5476]
          Length = 126

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 6/56 (10%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  +   H L    LA+   +  ++ +  +        + P   ++ K+      +
Sbjct: 7  LKDLRTYHGLKQKELAKAINVSSSTISGYENG------KNPDYNTLVKLANYFKVS 56


>gi|218508625|ref|ZP_03506503.1| putative transcriptional regulator protein [Rhizobium etli Brasil
           5]
          Length = 225

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 22/177 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++  +T + LA   G+     +K +   I      PS  ++  +  A    
Sbjct: 38  IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 92

Query: 69  ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +                         R   +   +  LL    + S G        T   
Sbjct: 93  LTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYNLLGHIDNNSSGVIVEPYLITLTA 152

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            + V           +Y ++ +          +  + + GD L  ++         +
Sbjct: 153 DSDVFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 206


>gi|190895653|ref|YP_001985945.1| transcriptional regulator [Rhizobium etli CIAT 652]
 gi|190699598|gb|ACE93682.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 231

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 22/177 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++  +T + LA   G+     +K +   I      PS  ++  +  A    
Sbjct: 40  IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 94

Query: 69  ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +                         R   +   +  LL    + S G        T   
Sbjct: 95  LTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYNLLGHIDNNSSGVIVEPYLITLTA 154

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            + V           +Y ++ +          +  + + GD L  ++         +
Sbjct: 155 DSDVFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 208


>gi|154252262|ref|YP_001413086.1| XRE family transcriptional regulator [Parvibaculum
          lavamentivorans DS-1]
 gi|154156212|gb|ABS63429.1| transcriptional regulator, XRE family [Parvibaculum
          lavamentivorans DS-1]
          Length = 72

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K +   + R+  +  LT    A  +G      +  ++       R P+  ++++
Sbjct: 1  MDM--RKTVGGNVRRIRLKKGLTQEQFAEISGFSQQYISGLEQG-----RRNPTVVTLYE 53

Query: 61 ILAATNETICQ 71
          +  A   +   
Sbjct: 54 LATALGVSHLD 64


>gi|172060084|ref|YP_001807736.1| XRE family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992601|gb|ACB63520.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MC40-6]
          Length = 219

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA ++G+  +  +  +R         P+   + K+ A  
Sbjct: 15  NERIARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASA-----SPTAVVLDKLAAGL 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD--SGVFPTGNKWNTVGVPEI 123
             ++  L      D        +     +  P+      +     +P+  +   V  P  
Sbjct: 70  GVSLAGLFGGDRDDAPAQPLVRRAQQAEWRDPASGYVRRNLSPPGWPSPIQLVEVDFPPG 129


>gi|62182502|ref|YP_218919.1| hypothetical protein SC3932 [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|62130135|gb|AAX67838.1| hypothetical protein SCH_3932 [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|320088451|emb|CBY98210.1| Uncharacterized HTH-type transcriptional regulator ydcN
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
 gi|322716998|gb|EFZ08569.1| hypothetical protein SCA50_4196 [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
 gi|323132385|gb|ADX19815.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
          Length = 204

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I  ++ R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A 
Sbjct: 30 IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVAL 81


>gi|186685172|ref|YP_001868368.1| XRE family transcriptional regulator [Nostoc punctiforme PCC
          73102]
 gi|186467624|gb|ACC83425.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC
          73102]
          Length = 84

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST--ESIFKILAA 64
          KI + I  + ++ +L+    A K G+   + N+ +               E + K+   
Sbjct: 8  KISDLIRELRQQLDLSQEKFAAKLGVSLRTVNRWENGSTVPSQMALKLIEEMLQKMGEP 66


>gi|332637058|ref|ZP_08415921.1| hypothetical protein WcibK1_00055 [Weissella cibaria KACC 11862]
          Length = 127

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 1   MTSFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
           M S   K I    I R+ ++  +T + LA   G+   + +            +P  + I 
Sbjct: 1   MASSEGKAIMGRNIKRLIKQREITAARLAEIVGVSTATISDWSNGKT-----YPRIDKIE 55

Query: 60  KILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
            +      +   L++ P          E  +   ++    SG   +            + 
Sbjct: 56  AMADYFGVSKSDLVEDPDKVSTAVATDEPVLMAAHWGLDISGLPDEDRHRVIDRAKAYIE 115


>gi|325694303|gb|EGD36217.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK150]
          Length = 94

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  + E+   + + +A   G    + +  +            + S+ ++      +
Sbjct: 2  LGKQLKLIREQKGYSQAQIAESLGTTRQTISNWENDKTI-----LDSASLIRLADFYQIS 56

Query: 69 ICQLL 73
          + +L 
Sbjct: 57 LDELC 61


>gi|310826476|ref|YP_003958833.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612]
 gi|308738210|gb|ADO35870.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612]
          Length = 148

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 18/44 (40%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          +  ++ +  +R  L+   +A K G+   + +K +        R 
Sbjct: 3  LGNSLYKARKRTGLSQEEVAEKLGVSRQTISKWETNETLPDIRQ 46


>gi|229056271|ref|ZP_04195692.1| Transcriptional regulator [Bacillus cereus AH603]
 gi|228721076|gb|EEL72614.1| Transcriptional regulator [Bacillus cereus AH603]
          Length = 217

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 1  MTSF-SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M    S++++   I ++ +   L+   L     +DP + ++          + P  + + 
Sbjct: 1  MPKENSNERLSTLIKKLLKERALSMRQLGMLTNIDPATISRIMNG-----KQPPKQKHLQ 55

Query: 60 KILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
          K           L D  + +     K++ ++ 
Sbjct: 56 KFAEFLQVPPQLLFDEMYPNSPHINKEKTDMY 87


>gi|227545534|ref|ZP_03975583.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|227184485|gb|EEI64556.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
          Length = 119

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I        +T   LA    L     ++ +R  +E   R  +   I K L  T E
Sbjct: 3  KIGVNISHRRHELKMTQEELANATDLSTNYVSRLERGEVE-YIRALTLSKIAKGLKTTME 61

Query: 68 TICQLLDLPFSDGRTTEK 85
           +              + 
Sbjct: 62 KLIDGNTNQQHIRGHYQS 79


>gi|255102292|ref|ZP_05331269.1| putative phage DNA-binding protein [Clostridium difficile
           QCD-63q42]
          Length = 254

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 8/133 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + + ++ ++  LT   LA  + +   +    +        R P+ +++ K+  A   
Sbjct: 2   QIGKNLKKIRKQKELTQIQLAEISDISRNALINYEND-----KRIPNIDTLSKLAKALKI 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
                     +        E  +  L          FD  +    N      +    S  
Sbjct: 57  EKTIFYFDIEN---EVITNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLL 113

Query: 128 NGIYAIQTQDTRH 140
            G ++ + Q  + 
Sbjct: 114 LGAWSDKDQYYKL 126


>gi|206974889|ref|ZP_03235804.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|222095479|ref|YP_002529539.1| hypothetical protein BCQ_1819 [Bacillus cereus Q1]
 gi|206746908|gb|EDZ58300.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|221239537|gb|ACM12247.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 146

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 5/110 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E + ++ E    +   +A+K G+   +  K +          P  +++  +    N T
Sbjct: 3   LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKS-----CPDIDNLILLSEMYNVT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           + +L+    +        E++         G    F   +      +  +
Sbjct: 58  LDELIKGNQNIKEKIHIDEEDEDFEKENDFGFYIGFGLLIMSAFIDYEKI 107


>gi|88855521|ref|ZP_01130185.1| Transcriptional regulator, MerR family protein [marine
           actinobacterium PHSC20C1]
 gi|88815428|gb|EAR25286.1| Transcriptional regulator, MerR family protein [marine
           actinobacterium PHSC20C1]
          Length = 169

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 32/126 (25%), Gaps = 8/126 (6%)

Query: 22  LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGR 81
           +T + LA K+ L P   ++ +R         PS  ++ ++       + +          
Sbjct: 1   MTLAQLAAKSELSPAIVSQIERGKAN-----PSFTTLAQLAHGLEIPVGRFFVGHAEPAS 55

Query: 82  TTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRSPHNGIYAIQTQDT 138
              +      L        G      + P  N       +  P         +    ++ 
Sbjct: 56  PVVRSGDRRNLKGVTRESVGEAVHELLTPEQNGLIEAQWIVSPPGHDTSATPFHHGGEEF 115

Query: 139 RHKTQD 144
                 
Sbjct: 116 GIVMSG 121


>gi|150017031|ref|YP_001309285.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149903496|gb|ABR34329.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 112

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I    ER+ LT    +    + PT  ++ +        R PS  +  KI +  + 
Sbjct: 11 DIGKRIKAERERNGLTREKFSELVSISPTYLSQIELGQ-----RHPSLPTTIKIASTLHI 65

Query: 68 T 68
          +
Sbjct: 66 S 66


>gi|325289203|ref|YP_004265384.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964604|gb|ADY55383.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 117

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
              K++  AI      +NLT   LA  A +      + +       +R PS E ++K++ 
Sbjct: 3   LDRKRLGGAIKNARLENNLTQEELAELADIATVHMKQLEAG-----SRNPSIEVLYKLVR 57

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
             N ++  +     +DGR  + K +       P   +  +
Sbjct: 58  LLNLSVDAVFFPERADGRELQHKIERRLNHCSPHELNMIY 97


>gi|317495853|ref|ZP_07954216.1| signal peptidase I [Gemella moribillum M424]
 gi|316914030|gb|EFV35513.1| signal peptidase I [Gemella moribillum M424]
          Length = 183

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTR--HKTQDTSMLPLYRKGDILILNS-AIQVNCGDRLL 172
           +      +      IY + +         +  SM   +   D + +N  +     GD ++
Sbjct: 6   DIFEWIVVIVASIAIYLVLSTYVIAPFTVKGHSMDYTFADNDRVFVNKFSKTFERGDEVV 65

Query: 173 IKPRTGDIVAKVLISRRGRSID 194
                 D   K +I   G +I+
Sbjct: 66  FHANETDDYIKRIIGVPGDTIE 87


>gi|283768814|ref|ZP_06341725.1| DNA-binding protein [Bulleidia extructa W1219]
 gi|283104600|gb|EFC05973.1| DNA-binding protein [Bulleidia extructa W1219]
          Length = 331

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I  + +++  +   LA +  +   S +K +     G    P    I K+      +
Sbjct: 3   LADKIITLRKKNGWSQEELADQLEVSRQSVSKWE-----GAQSIPDMNKILKLSKVFGVS 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
              LL           + E +        S  
Sbjct: 58  TDYLLKDEIVIAENETQPETDNHSAEVSVSME 89


>gi|295699801|ref|YP_003607694.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439014|gb|ADG18183.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 104

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + +  + ++  ++   LA +AGL  T  +  +R       R    +++  + AA   +
Sbjct: 21 IAKNLRLLRDKKGMSQEVLADRAGLHRTQLSVIERG-----LRNMRLDTLVSLAAALGVS 75

Query: 69 ICQ 71
            +
Sbjct: 76 ETE 78


>gi|261392144|emb|CAX49650.1| putative HTH-type transcriptional regulator [Neisseria
          meningitidis 8013]
          Length = 117

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 2/84 (2%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I +  +    +   LA    L     ++ +R    G+        I   L      
Sbjct: 13 IGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGV--GKINISHLVDIAVFLETPIAW 70

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
            Q           T +   E   
Sbjct: 71 FFQDCLPKPLTVACTPENTPEQQW 94


>gi|260459675|ref|ZP_05807929.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034477|gb|EEW35734.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum
           WSM2075]
          Length = 285

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  +  R +L  S  A   G+D ++ ++          R P  E++  I A    ++ 
Sbjct: 12  ERLKLLLTRSDLNQSAFATAVGIDRSALSQLMSGAS---TRLPRAETLLNIAAEFKVSLD 68

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
            LL L   +G T   + +E   +   P G      +  F          VP         
Sbjct: 69  WLLGLSQDEGVTG--EIRESLEIEEAPDGFDRTLLAKWFAEAAGTKIRYVPAGIPDLLRT 126

Query: 131 YAI 133
           +A+
Sbjct: 127 HAL 129


>gi|228992527|ref|ZP_04152454.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM
          12442]
 gi|229006074|ref|ZP_04163762.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4]
 gi|228755150|gb|EEM04507.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4]
 gi|228767161|gb|EEM15797.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM
          12442]
          Length = 123

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + ++ + +NLT   L +K  L  ++ +  +        R P  +++ K       +
Sbjct: 2  IGENLRKLRKTNNLTMKELGQKLNLAESTISGYENGN-----RKPDYDTLNKFADFFEVS 56


>gi|162448892|ref|YP_001611259.1| hypothetical protein sce0622 [Sorangium cellulosum 'So ce 56']
 gi|161159474|emb|CAN90779.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 202

 Score = 42.8 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ I + I  + +  +LT   +AR+ GL  +  ++ +R          S  S++KI  A 
Sbjct: 137 HRVIGDTIRNLRKDKDLTLKQMARRTGLSVSLLSQIERAESSA-----SISSLYKIAVAL 191

Query: 66  NETICQLLDLP 76
              I  L    
Sbjct: 192 ESRIQDLFGHY 202


>gi|326941347|gb|AEA17243.1| transcriptional repressor [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57


>gi|325262607|ref|ZP_08129344.1| DNA-binding protein [Clostridium sp. D5]
 gi|324032439|gb|EGB93717.1| DNA-binding protein [Clostridium sp. D5]
          Length = 365

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          KI E I    +   LT   LAR  G+   + NK ++   
Sbjct: 2  KIHEMIRCKRKEMGLTQEELARYLGVSAPAVNKWEKGLS 40


>gi|313897061|ref|ZP_07830608.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|312974508|gb|EFR39976.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
          Length = 103

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  A+    E   ++   L    G+      + +R         P   ++ K+LA   +T
Sbjct: 34 LITALVNAREEKGISQRQLEELTGIKQPQIARMERGDAN-----PQLGTLLKVLAPLGKT 88


>gi|296504134|ref|YP_003665834.1| transcriptional repressor [Bacillus thuringiensis BMB171]
 gi|296325186|gb|ADH08114.1| transcriptional repressor [Bacillus thuringiensis BMB171]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57


>gi|296327851|ref|ZP_06870387.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154985|gb|EFG95766.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 209

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I R+ +  NL+   LA+ + +  +   + +R         P+  +++KI      +
Sbjct: 35  VSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGN-----PTLSTLWKIANGMQVS 89

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L+  P    + T+  E E  L       +   F             + V +  S  +
Sbjct: 90  FNTLIAQPKLPYKVTKLAEIEPILDMNGGLKNYSLFSD--IENNFSVYQIEVGKEISWIS 147

Query: 129 GIYAIQTQDTRHKTQD 144
             +   T +     Q 
Sbjct: 148 EAHLRGTAEFVIVIQG 163


>gi|296167102|ref|ZP_06849512.1| transcriptional regulatory protein [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295897544|gb|EFG77140.1| transcriptional regulatory protein [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 256

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S +    AI  + E  + + + LA   G+     +  +R       R P   ++ KI  
Sbjct: 1  MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSFLERGA-----RKPHKSTVQKIEN 55

Query: 64 ATN 66
             
Sbjct: 56 GLG 58


>gi|293401719|ref|ZP_06645861.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304977|gb|EFE46224.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 139

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  +     ++   LA +  +   + +K +R         P  + +  +      +
Sbjct: 4  ENLKTLRIEKGMSQQFLADQLHVTRQTISKWERGLSV-----PDADMLIALSEMFEVS 56


>gi|229012804|ref|ZP_04169973.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048]
 gi|228748485|gb|EEL98341.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57


>gi|229028813|ref|ZP_04184915.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271]
 gi|228732500|gb|EEL83380.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N +   LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|229061195|ref|ZP_04198545.1| Helix-turn-helix domain protein [Bacillus cereus AH603]
 gi|228718066|gb|EEL69706.1| Helix-turn-helix domain protein [Bacillus cereus AH603]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57


>gi|229117089|ref|ZP_04246469.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3]
 gi|228666378|gb|EEL21840.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57


>gi|168215895|ref|ZP_02641520.1| transcriptional regulator, Cro/CI family [Clostridium perfringens
          NCTC 8239]
 gi|182382138|gb|EDT79617.1| transcriptional regulator, Cro/CI family [Clostridium perfringens
          NCTC 8239]
          Length = 170

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I  + +   LT    A+K         K +   +E     P  E + +I  A + 
Sbjct: 3  NIGDKIKAIRKERGLTQKEFAKKINKSERMIQKYENSEVE-----PRIEVLREIATALDI 57

Query: 68 TICQ 71
          +  +
Sbjct: 58 SFSE 61


>gi|218898722|ref|YP_002447133.1| helix-turn-helix domain protein [Bacillus cereus G9842]
 gi|218540740|gb|ACK93134.1| helix-turn-helix domain protein [Bacillus cereus G9842]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57


>gi|42782702|ref|NP_979949.1| helix-turn-helix domain-containing protein [Bacillus cereus ATCC
          10987]
 gi|42738628|gb|AAS42557.1| helix-turn-helix domain protein [Bacillus cereus ATCC 10987]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57


>gi|77463742|ref|YP_353246.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1]
 gi|77388160|gb|ABA79345.1| Predicted transcriptional regulators [Rhodobacter sphaeroides
          2.4.1]
          Length = 428

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+ +  ++ E       +  L  + LAR AG+  +  N  +        R    E + +
Sbjct: 3  MTALTGSRVRER----RLQLGLRQADLARAAGISASYLNLIEHN-----RRRIGDEVLAR 53

Query: 61 ILAAT 65
          +  A 
Sbjct: 54 LARAL 58


>gi|29375989|ref|NP_815143.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|29343451|gb|AAO81213.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
          Length = 107

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + ++  LT + +A   G+  T+++  ++       R P  +   KI    N ++
Sbjct: 3  GTRLTELRKQKKLTQTDVANALGVARTTYSSYEQG-----RRTPDIDIQNKIADYFNVSL 57

Query: 70 CQLLDLPFS 78
            L      
Sbjct: 58 DYLHGRESF 66


>gi|163941236|ref|YP_001646120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163863433|gb|ABY44492.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   L+   LA K      + +K +         +P TE +  I      +
Sbjct: 4  GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQG-----FPETEKLIMIGNVFEVS 57


>gi|134299415|ref|YP_001112911.1| cupin 2 domain-containing protein [Desulfotomaculum reducens
          MI-1]
 gi|134052115|gb|ABO50086.1| Cupin 2, conserved barrel domain protein [Desulfotomaculum
          reducens MI-1]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++I+E +  +  + N+T   L+ K GL  +  ++ +R          +  S+ KI  A N
Sbjct: 2  EEIFEKVRTLRNQKNMTLKDLSEKTGLSVSFLSQVERGTS-----SLAITSLKKIADALN 56

Query: 67 ETICQLLDLPFSDGRTTEKKEKE 89
            I        +   TT   E++
Sbjct: 57 VHIASFFANYSNTNFTTRADEQK 79


>gi|126462571|ref|YP_001043685.1| helix-turn-helix domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|332558597|ref|ZP_08412919.1| helix-turn-helix domain-containing protein [Rhodobacter
          sphaeroides WS8N]
 gi|126104235|gb|ABN76913.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC
          17029]
 gi|332276309|gb|EGJ21624.1| helix-turn-helix domain-containing protein [Rhodobacter
          sphaeroides WS8N]
          Length = 428

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+ +  ++ E       +  L  + LAR AG+  +  N  +        R    E + +
Sbjct: 3  MTALTGSRVRER----RLQLGLRQADLARAAGISASYLNLIEHN-----RRRIGDEVLAR 53

Query: 61 ILAAT 65
          +  A 
Sbjct: 54 LARAL 58


>gi|317481961|ref|ZP_07940986.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916528|gb|EFV37925.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 362

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  + NLT   LA   G+   + +K +         +P  + +  I      T+ 
Sbjct: 5  ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59

Query: 71 Q 71
           
Sbjct: 60 D 60


>gi|296453479|ref|YP_003660622.1| transcriptional regulator [Bifidobacterium longum subsp. longum
          JDM301]
 gi|296182910|gb|ADG99791.1| Predicted transcriptional regulator [Bifidobacterium longum
          subsp. longum JDM301]
          Length = 356

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  + NLT   LA   G+   + +K +         +P  + +  I      T+ 
Sbjct: 5  ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59

Query: 71 Q 71
           
Sbjct: 60 D 60


>gi|295090423|emb|CBK76530.1| Predicted transcriptional regulators [Clostridium cf.
          saccharolyticum K10]
          Length = 171

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  + +   L+   L+ K  +   + +K ++         P +  +  +    + +
Sbjct: 4  ENIKNLRKAKGLSQEELSVKLNVVRQTVSKWEKGLSV-----PDSNMLISLADELDTS 56


>gi|291517434|emb|CBK71050.1| Predicted transcriptional regulators [Bifidobacterium longum
          subsp. longum F8]
          Length = 356

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  + NLT   LA   G+   + +K +         +P  + +  I      T+ 
Sbjct: 5  ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59

Query: 71 Q 71
           
Sbjct: 60 D 60


>gi|284006480|emb|CBA71741.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 96

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
           I + I    +   L+   LA+K G+     ++ +R   + +
Sbjct: 6  NIGKMIKFKRKEKGLSGELLAKKIGVSQQPLSRYERGVNDIK 47


>gi|229102450|ref|ZP_04233157.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28]
 gi|228680935|gb|EEL35105.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + ++ E    +   +A+K G+   +  K +         +P  +++  +    N T
Sbjct: 3  IGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKS-----YPDIDNLILLSEMYNVT 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93
          + +L+    S        E+E    
Sbjct: 58 LDELIKGNQSFKEKIHIDEEEADFE 82


>gi|227545776|ref|ZP_03975825.1| possible transcriptional regulator [Bifidobacterium longum subsp.
          infantis ATCC 55813]
 gi|227213892|gb|EEI81731.1| possible transcriptional regulator [Bifidobacterium longum subsp.
          infantis ATCC 55813]
          Length = 362

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  + NLT   LA   G+   + +K +         +P  + +  I      T+ 
Sbjct: 5  ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59

Query: 71 Q 71
           
Sbjct: 60 D 60


>gi|254502669|ref|ZP_05114820.1| bacteriophage CI repressor protein, putative [Labrenzia
          alexandrii DFL-11]
 gi|222438740|gb|EEE45419.1| bacteriophage CI repressor protein, putative [Labrenzia
          alexandrii DFL-11]
          Length = 147

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I +  +   L+ + LAR+ G+  ++    +    E   R      +  IL  +   
Sbjct: 41 LGERICKARDIAGLSTAQLARRLGIKTSTLQSWESDRSE--PRSNKLILLAGILNVSPTW 98


>gi|254486796|ref|ZP_05100001.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101]
 gi|214043665|gb|EEB84303.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101]
          Length = 132

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +    E   +T + LA++ G+   +    +    E   R      +  IL  +   
Sbjct: 16 GDRVAAAREHAQMTQAALAKRLGVKQATLRAWEDDLSE--PRANRLSMLAGILGVSMMW 72


>gi|218297117|ref|ZP_03497788.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23]
 gi|218242531|gb|EED09069.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23]
          Length = 214

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 53/211 (25%), Gaps = 20/211 (9%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES---IFKILAATNE 67
             +    +   LT  GLAR AG   +   K +R  ++   R  S +    + K L     
Sbjct: 14  ARLVERRKALGLTQEGLARLAGFSTSLMAKIERGAVD--LRSLSAQHVVGLAKALGLPLN 71

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            +           +         P                  P G     V      +  
Sbjct: 72  ALLDEDLPGGEVAKPLLLPVYRAPEDLAREDVERFAITPEQVPPGA---EVSRLAYLTLP 128

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
              +                     +   ++      V  G   +++   G   A    +
Sbjct: 129 GRWFTTLDVPFPLT-----------RRVHVMAELRPLVRPGGVYVVRHGEGMGFATD-EA 176

Query: 188 RRGRSIDLMSLNCCYPVDTVEMSDIEWIARI 218
            RG  + L  L+   P   +E    E +  +
Sbjct: 177 LRGSRLALYPLDPSLPTLWLEGERPEVVGLV 207


>gi|169350968|ref|ZP_02867906.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM
          1552]
 gi|169292030|gb|EDS74163.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM
          1552]
          Length = 335

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + + I  + +++  +   LA+K  +   S +K +     G    P  + I  +     
Sbjct: 17 LADKIIELRKKNGWSQEQLAQKLNVTRQSISKWE-----GEQSVPDLQKIILLSEIFG 69


>gi|149914872|ref|ZP_01903401.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b]
 gi|149811060|gb|EDM70897.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b]
          Length = 207

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E +  + +    T    A +AGL  ++ +K +   +      P+ E++ K+      
Sbjct: 26 NLGERVRDLRKSRGWTLEQAASQAGLARSTLSKIENGQM-----SPTYEALKKLAVGLEI 80

Query: 68 TICQLLDLPFS 78
          ++ QL   P  
Sbjct: 81 SVPQLFTPPQR 91


>gi|159901339|ref|YP_001547586.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159894378|gb|ABX07458.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 123

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S S + I   I R   R  LT + L  K G+  +  +  +        R    E + +
Sbjct: 1  MASLS-EAIGAIIKRKRSRDRLTQNDLGAKVGVSGSYISAVEAGNTS--PRIAEVEGLAQ 57

Query: 61 ILAAT 65
          +   T
Sbjct: 58 VFRTT 62


>gi|17229533|ref|NP_486081.1| hypothetical protein asr2041 [Nostoc sp. PCC 7120]
 gi|17131132|dbj|BAB73740.1| asr2041 [Nostoc sp. PCC 7120]
          Length = 80

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            KI + I  +     LT    A   G+   + N+ +      +    + + I  ++   
Sbjct: 11 QPKIGQFIQEIRLVMGLTQEEFAVILGVTFPTVNRWENGHT--KPSKLAIQQIEALVDKL 68

Query: 66 NET 68
           E 
Sbjct: 69 GED 71


>gi|329729091|gb|EGG65502.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU144]
          Length = 175

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + I ++ +   +T S LA    +  +  +  +             ++I KI    N 
Sbjct: 2  NIGDNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKN-----LGIKTIEKIAKKLNV 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|327393941|dbj|BAK11363.1| HTH-type transcriptional regulator HipB [Pantoea ananatis
          AJ13355]
          Length = 79

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S +++   +  + +++  T   LA+K GL   + +  +           S  ++FKIL A
Sbjct: 4  SPRQLANQVRLLRQQNGWTQVELAKKVGLKQATLSHFENA-----PDTTSLATLFKILQA 58

Query: 65 T 65
           
Sbjct: 59 L 59


>gi|325522132|gb|EGD00789.1| hypothetical protein B1M_29795 [Burkholderia sp. TJI49]
          Length = 110

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 7   KKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           ++ + A+  +    +   LT + +A + G   ++ ++ +      +   PS  ++ K  A
Sbjct: 41  EEEFTALRALLDARKEAGLTQAQVAERMGTTTSAVSRLEASLSSEK-HSPSFATLRKYAA 99

Query: 64  ATN 66
           A  
Sbjct: 100 ACG 102


>gi|323358883|ref|YP_004225279.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323275254|dbj|BAJ75399.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 474

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M + +   I   I ++     LT   LA   G  P+  +  +    E +      ++I +
Sbjct: 1  MDTLT---IGRRIRQLRTARGLTLDDLATAVGRAPSQMSMIENGRREAKLTL--LQAIAR 55

Query: 61 ILAA 64
           L  
Sbjct: 56 ALEC 59


>gi|306832595|ref|ZP_07465734.1| cro/CI family transcriptional regulator [Streptococcus bovis ATCC
          700338]
 gi|304425203|gb|EFM28330.1| cro/CI family transcriptional regulator [Streptococcus bovis ATCC
          700338]
          Length = 70

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++   I  + +   ++ + LA    +   +    ++          S E   KI    
Sbjct: 2  EEEMKTKIQELRKASKISQAELAEALDVTRQTIISLEKGRYNA-----SLELAHKIAKYF 56

Query: 66 NETICQLLDLPF 77
           +TI ++     
Sbjct: 57 GKTIEEIFIFED 68


>gi|291617504|ref|YP_003520246.1| HipB [Pantoea ananatis LMG 20103]
 gi|291152534|gb|ADD77118.1| HipB [Pantoea ananatis LMG 20103]
          Length = 79

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
          S +++   +  + +++  T   LA+K GL   + +  +           S  ++FKIL A
Sbjct: 4  SPRQLANQVRLLRQQNGWTQVELAKKVGLKQATLSHFENA-----PDTTSLATLFKILQA 58

Query: 65 T 65
           
Sbjct: 59 L 59


>gi|260437982|ref|ZP_05791798.1| toxin-antitoxin system, antitoxin component, Xre family
           [Butyrivibrio crossotus DSM 2876]
 gi|292809608|gb|EFF68813.1| toxin-antitoxin system, antitoxin component, Xre family
           [Butyrivibrio crossotus DSM 2876]
          Length = 129

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/108 (8%), Positives = 25/108 (23%), Gaps = 9/108 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  +  +  ++   LA   G+   +  + +               +  I       
Sbjct: 3   IGQKIKELRIKKGISVDALAEATGISRATLYRYEN----ASIHKIPVACLESICRVLGVK 58

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
              L++   S+      +    P                       ++
Sbjct: 59  TSDLMEDTDSNQLEELPQAFNNPQEALSFILKMPA-----LAAYGGYD 101


>gi|256789090|ref|ZP_05527521.1| transcriptional regulatory protein [Streptomyces lividans TK24]
          Length = 190

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 19/149 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  ++ KI  A  
Sbjct: 9   QSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKW 115
            +I  LLD            ++ + L +              +             G   
Sbjct: 64  VSITTLLDWEQGPAVRVVPADEAVRLWHTDAGSFSRLLAGVEAPGPLEMWEWRLMPGESS 123

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
            +   P        +  + + +       
Sbjct: 124 LSDPHPTGTVE---LVHVTSGELALTVDG 149


>gi|254719904|ref|ZP_05181715.1| hypothetical protein Bru83_10224 [Brucella sp. 83/13]
 gi|265984912|ref|ZP_06097647.1| transcriptional regulatory protein [Brucella sp. 83/13]
 gi|264663504|gb|EEZ33765.1| transcriptional regulatory protein [Brucella sp. 83/13]
          Length = 75

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K +     R+     LT   +  ++G      +  ++       R P+  ++++
Sbjct: 1  MDM--RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQG-----RRNPTVITLYE 53

Query: 61 ILAATNETICQLLDLPF 77
          +  A   +  +L     
Sbjct: 54 LAQALGVSHVELFKPDE 70


>gi|240016239|ref|ZP_04722779.1| putative phage associated protein [Neisseria gonorrhoeae FA6140]
 gi|317163944|gb|ADV07485.1| putative phage associated protein [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 99

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74
           +  +   T S LA  AGL     ++ +        +    +++ K+  A   +  ++  
Sbjct: 33 SLRMKKGFTQSELATAAGLPQPYLSRIEN-----SKQSLQDKTVQKLANALGVSPLEVRA 87

Query: 75 LPFSDGRTT 83
                   
Sbjct: 88 AFERRYEYM 96


>gi|237794603|ref|YP_002862155.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657]
 gi|229262963|gb|ACQ53996.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657]
          Length = 136

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 18/124 (14%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I ++ +  N+T   L +  G+  +     +        R PS E + KI    + +
Sbjct: 2   LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNA-----RKPSYEVLIKIAEFFSVS 56

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              LL+       T +  +K   ++                        V  PE +    
Sbjct: 57  TDFLLNTEEKLDMTLDSVKKVYNMVKEAT-------------EEYGIEEVNQPEKQENKI 103

Query: 129 GIYA 132
              A
Sbjct: 104 KTLA 107


>gi|228969513|ref|ZP_04130324.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228790215|gb|EEM37986.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 114

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 10/88 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M         E +  + +    T   L    GL   + +  +        R    +S+ K
Sbjct: 1  MVMR-----GERVKTLRKMKGWTQDELGAAVGLKKAAISGIENN-----KRDRGEKSVSK 50

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEK 88
                 T   LL         +E+  +
Sbjct: 51 FAEVFGCTADYLLGFSDDPALNSEQNLR 78


>gi|229010113|ref|ZP_04167327.1| hypothetical protein bmyco0001_5810 [Bacillus mycoides DSM 2048]
 gi|228751246|gb|EEM01058.1| hypothetical protein bmyco0001_5810 [Bacillus mycoides DSM 2048]
          Length = 72

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N T S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 38


>gi|229092281|ref|ZP_04223456.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42]
 gi|228691098|gb|EEL44864.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+       +   K         F            
Sbjct: 56  YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99


>gi|229126111|ref|ZP_04255132.1| hypothetical protein bcere0015_5740 [Bacillus cereus BDRD-Cer4]
 gi|228657318|gb|EEL13135.1| hypothetical protein bcere0015_5740 [Bacillus cereus BDRD-Cer4]
          Length = 72

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N T S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 38


>gi|222110532|ref|YP_002552796.1| hypothetical protein Dtpsy_1331 [Acidovorax ebreus TPSY]
 gi|221729976|gb|ACM32796.1| protein of unknown function DUF955 [Acidovorax ebreus TPSY]
          Length = 401

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 6/118 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E + ++     L+ + LA   G+ P + +K +        + P  E++ ++    N T  
Sbjct: 12  ERLSQILAARRLSQAQLASLVGVSPATVSKWRSGN-----QAPERETLERLAGVVNVTPE 66

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                P +       +      +    +      +            V  P +  P  
Sbjct: 67  WFTRAPSAKVSLPLFRSNASAHV-AARAMLEARMEWAQDVALALSEFVDYPTLNLPIR 123


>gi|218234849|ref|YP_002365477.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228906437|ref|ZP_04070319.1| hypothetical protein bthur0013_6180 [Bacillus thuringiensis IBL
          200]
 gi|228943013|ref|ZP_04105518.1| hypothetical protein bthur0008_56190 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228951183|ref|ZP_04113298.1| hypothetical protein bthur0006_6090 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228975931|ref|ZP_04136452.1| hypothetical protein bthur0003_56560 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|229108292|ref|ZP_04237911.1| hypothetical protein bcere0018_5800 [Bacillus cereus Rock1-15]
 gi|229143408|ref|ZP_04271837.1| hypothetical protein bcere0012_5790 [Bacillus cereus BDRD-ST24]
 gi|229149021|ref|ZP_04277266.1| hypothetical protein bcere0011_5900 [Bacillus cereus m1550]
 gi|296501436|ref|YP_003663136.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|218162806|gb|ACK62798.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228634561|gb|EEK91145.1| hypothetical protein bcere0011_5900 [Bacillus cereus m1550]
 gi|228640036|gb|EEK96437.1| hypothetical protein bcere0012_5790 [Bacillus cereus BDRD-ST24]
 gi|228675129|gb|EEL30354.1| hypothetical protein bcere0018_5800 [Bacillus cereus Rock1-15]
 gi|228783767|gb|EEM31825.1| hypothetical protein bthur0003_56560 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228808480|gb|EEM54984.1| hypothetical protein bthur0006_6090 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228816677|gb|EEM62797.1| hypothetical protein bthur0008_56190 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228853207|gb|EEM97982.1| hypothetical protein bthur0013_6180 [Bacillus thuringiensis IBL
          200]
 gi|296322488|gb|ADH05416.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|326938457|gb|AEA14353.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 72

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N T S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 38


>gi|206967781|ref|ZP_03228737.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|229068368|ref|ZP_04201671.1| hypothetical protein bcere0025_5830 [Bacillus cereus F65185]
 gi|229188891|ref|ZP_04315924.1| hypothetical protein bcere0002_5820 [Bacillus cereus ATCC 10876]
 gi|206736701|gb|EDZ53848.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|228594596|gb|EEK52382.1| hypothetical protein bcere0002_5820 [Bacillus cereus ATCC 10876]
 gi|228714829|gb|EEL66701.1| hypothetical protein bcere0025_5830 [Bacillus cereus F65185]
          Length = 72

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N T S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFTQSVLAEKVGVTRQTIAAIEKG 38


>gi|163801055|ref|ZP_02194955.1| hypothetical protein 1103602000593_AND4_02293 [Vibrio sp. AND4]
 gi|159175404|gb|EDP60201.1| hypothetical protein AND4_02293 [Vibrio sp. AND4]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/101 (8%), Positives = 28/101 (27%), Gaps = 8/101 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M   + + +  A+ +  +   LT   L+ K G+  ++F +         ++         
Sbjct: 1   MRELTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTFKRHLTSTNLALDKLLEYCRAVD 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
            + + + K+                 +         +    
Sbjct: 61  CTLDELQKLANQLQAEDQDYFSHTQDEVFFQFPHLYDFYRE 101


>gi|156974376|ref|YP_001445283.1| hypothetical protein VIBHAR_02091 [Vibrio harveyi ATCC BAA-1116]
 gi|156525970|gb|ABU71056.1| hypothetical protein VIBHAR_02091 [Vibrio harveyi ATCC BAA-1116]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/101 (8%), Positives = 28/101 (27%), Gaps = 8/101 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M   + + +  A+ +  +   LT   L+ K G+  ++F +         ++         
Sbjct: 1   MRELTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTFKRHLTSTNLALDKLLEYCRAVD 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
            + + + K+                 +         +    
Sbjct: 61  CTLDELQKLANQLQAEDQDYFSHTQDEVFFQFPHLYDFYRE 101


>gi|153835799|ref|ZP_01988466.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148867457|gb|EDL66843.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/101 (8%), Positives = 28/101 (27%), Gaps = 8/101 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP------- 53
           M   + + +  A+ +  +   LT   L+ K G+  ++F +         ++         
Sbjct: 1   MRELTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTFKRHLTSTNLALDKLLEYCRAVD 60

Query: 54  -STESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
            + + + K+                 +         +    
Sbjct: 61  CTLDELQKLANQLQAEDQDYFSHTQDEVFFQFPHLYDFYRE 101


>gi|126348551|emb|CAJ90275.1| putative transcriptional regulatory protein [Streptomyces
           ambofaciens ATCC 23877]
          Length = 190

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 6/124 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  ++ KI  A  
Sbjct: 9   QSLARNVKRWRGERGFTLETLAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125
            +I  LLD            E+ I L +               P     W    +P   S
Sbjct: 64  ISITTLLDREQGPTVRVVPAERAIRLWHTDAGSFSRLLAGVEAPGPLELWEWRLMPGESS 123

Query: 126 PHNG 129
           P + 
Sbjct: 124 PSDP 127


>gi|120536951|ref|YP_957009.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120326785|gb|ABM21094.1| transcriptional regulator, XRE family [Marinobacter aquaeolei
          VT8]
          Length = 229

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          +    I ++ E   ++   LAR+ GL   + ++ +    E            K+
Sbjct: 6  QFGTRIKQIREIRKISQGFLARQVGLTQATISRIESGIPEATASLLDMARALKV 59


>gi|34764995|ref|ZP_00145314.1| LexA repressor [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27885664|gb|EAA23087.1| LexA repressor [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 71

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 4/49 (8%)

Query: 175 PRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSD---IEWIARIL 219
               +   K L  +   + I L S N  Y    +        +   R++
Sbjct: 14  YYNDEGYIKRLEMKDKLKIITLKSDNPDYDDIDIPEEMQEYFQINGRVV 62


>gi|30263282|ref|NP_845659.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47528657|ref|YP_020006.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186132|ref|YP_029384.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|65320613|ref|ZP_00393572.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
           str. A2012]
 gi|165869231|ref|ZP_02213891.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167631940|ref|ZP_02390267.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167637201|ref|ZP_02395481.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170685020|ref|ZP_02876245.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170705153|ref|ZP_02895618.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177650111|ref|ZP_02933112.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190564884|ref|ZP_03017805.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813847|ref|YP_002813856.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229602441|ref|YP_002867542.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254685897|ref|ZP_05149756.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254738367|ref|ZP_05196070.1| DNA-binding protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254742466|ref|ZP_05200151.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254752683|ref|ZP_05204719.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254761198|ref|ZP_05213222.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30257916|gb|AAP27145.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47503805|gb|AAT32481.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180059|gb|AAT55435.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|164715957|gb|EDR21474.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167514708|gb|EDR90074.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167532238|gb|EDR94874.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170130008|gb|EDS98870.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170671280|gb|EDT22018.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172084063|gb|EDT69122.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190564201|gb|EDV18165.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227004554|gb|ACP14297.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229266849|gb|ACQ48486.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+       +   K         F            
Sbjct: 56  YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99


>gi|329927927|ref|ZP_08281955.1| cupin domain protein [Paenibacillus sp. HGF5]
 gi|328938146|gb|EGG34542.1| cupin domain protein [Paenibacillus sp. HGF5]
          Length = 189

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           HKK+   +  + +   L+   +A   G+      + +R         P+   +++I++  
Sbjct: 5   HKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSN-----PTISVLWRIVSGL 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
             +   L++   ++       + E              F
Sbjct: 60  GISFTTLIEEAETEVTVVAPDDVEPFHEAEGAYRVHPLF 98


>gi|328955766|ref|YP_004373099.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
 gi|328456090|gb|AEB07284.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
          Length = 72

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERH-NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M+    ++I   I  + ++   L+ +G A + G+D + F   ++          + + + 
Sbjct: 1  MSDSVDQQIGARIRCLRKKRTGLSQNGFACQIGIDRSYFATIEQG-----KHSATLQMLA 55

Query: 60 KILAATNETICQ 71
          +I      ++ +
Sbjct: 56 RISQGLGVSLQE 67


>gi|325263349|ref|ZP_08130084.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324031742|gb|EGB93022.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 354

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   I  + +   +T   LA   G+   + +K +          P    +  +  A  
Sbjct: 3  ENLGAHIAALRKTKGMTQEQLAAVLGISAPAVSKWETDSS-----CPDITLLCPLARALG 57

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
            +  LL    +       +     + 
Sbjct: 58 TNLDTLLQFEETLTDEQIAEHINQIIE 84


>gi|309774761|ref|ZP_07669783.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917446|gb|EFP63164.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 1  MTSFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M   +    K+ +AI +  +R  +T   LA   G    S +       +     P  + +
Sbjct: 1  MKKVTEINLKVGDAIRKGLQRKGMTQKELAMLVGSTQRSISSYINGNAQ-----PPLDIL 55

Query: 59 FKILAATNETICQLLDLPFSDGR 81
            I       + Q+L +P  +  
Sbjct: 56 SLICRILEINMNQILQIPDYNFP 78


>gi|262066094|ref|ZP_06025706.1| transcriptional regulator, MerR family [Fusobacterium
          periodonticum ATCC 33693]
 gi|291380189|gb|EFE87707.1| transcriptional regulator, MerR family [Fusobacterium
          periodonticum ATCC 33693]
          Length = 184

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + +      ++   LA K  L  +  ++ ++         PS E++ KI    +  
Sbjct: 3  IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTLDVR 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          +  L++    D R  E  +         
Sbjct: 58 VAYLIEDEEDDIRNIEHVKAANVRYIES 85


>gi|254723300|ref|ZP_05185088.1| DNA-binding protein [Bacillus anthracis str. A1055]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+       +   K         F            
Sbjct: 56  YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99


>gi|253754652|ref|YP_003027792.1| DNA-binding protein [Streptococcus suis BM407]
 gi|251817116|emb|CAZ54837.1| putative DNA-binding protein [Streptococcus suis BM407]
          Length = 119

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K++ + I  +    NL+   LA K  +   + ++ +          P  + + ++     
Sbjct: 2  KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSEWENGEAT-----PDIDKLVQLAEIFG 56

Query: 67 ET 68
           +
Sbjct: 57 VS 58


>gi|226305590|ref|YP_002765550.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|229489625|ref|ZP_04383488.1| putative transcriptional regulator [Rhodococcus erythropolis
          SK121]
 gi|226184707|dbj|BAH32811.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
 gi|229323722|gb|EEN89480.1| putative transcriptional regulator [Rhodococcus erythropolis
          SK121]
          Length = 187

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  A+    +   LT   +A K+GL     ++++          PS  ++ ++  +   T
Sbjct: 12 IGAAVRTARKEAGLTLREVAVKSGLSQPFLSQTENGHAV-----PSVMNLHRLAQSLGTT 66

Query: 69 IC 70
            
Sbjct: 67 AH 68


>gi|207723399|ref|YP_002253798.1| transcription regulator protein [Ralstonia solanacearum MolK2]
 gi|206588598|emb|CAQ35561.1| probable transcription regulator protein [Ralstonia solanacearum
          MolK2]
          Length = 96

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            A+  +     +    LA  AG++ +   K +R         P+   IF+I  A   + 
Sbjct: 26 GAAVRALRAERGIAQESLANLAGIERSHVGKVERGE-----HMPTLAIIFRIAGALECST 80

Query: 70 CQLLDLPFSDGRTTEK 85
            L+    S       
Sbjct: 81 AVLMTETESQLAAARS 96


>gi|254382154|ref|ZP_04997515.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194341060|gb|EDX22026.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +   +   +     R  ++   LA +AG      +  +     GR R PS E + +
Sbjct: 1  MTPTTTSSVGALLRTWRGRRGISQLELAGRAGSSSRHISFVE----TGRAR-PSEELLLR 55

Query: 61 ILAATNETICQLL 73
          +    +  + +  
Sbjct: 56 LADQLDVPVRERN 68


>gi|218439098|ref|YP_002377427.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171826|gb|ACK70559.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 533

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S ++I  A     +R  ++   LA+  G   +     +R     +        + KIL 
Sbjct: 478 LSAEQILTA----RKRQGISQRELAQLIGKSQSWIRDLERGRFTAKPED--QLRLQKILN 531


>gi|167748986|ref|ZP_02421113.1| hypothetical protein ANACAC_03767 [Anaerostipes caccae DSM 14662]
 gi|167651608|gb|EDR95737.1| hypothetical protein ANACAC_03767 [Anaerostipes caccae DSM 14662]
          Length = 371

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       +   + +  +   +T   LA   G+   S +K +         +P    + +
Sbjct: 3   MKEL---NLSNILVKKRKEKGITQDQLAAYIGVSKASVSKWETGQS-----YPDITFLPQ 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           + A  N ++ +L+       +   +K        F    +   F+  
Sbjct: 55  LAANFNMSVDELIGYKPQMTKEDIRKLYLRLAKDFSQKPAKEVFEEC 101


>gi|154506244|ref|ZP_02042982.1| hypothetical protein RUMGNA_03786 [Ruminococcus gnavus ATCC
          29149]
 gi|153793743|gb|EDN76163.1| hypothetical protein RUMGNA_03786 [Ruminococcus gnavus ATCC
          29149]
          Length = 162

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 1  MTSFSH------KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          M   ++      +KI   +  + +  N+T   LA K+G++     K +    +
Sbjct: 1  MYMLTYRLRGEMEKIMAELKELRKFMNMTQKELAEKSGINLRQIQKYEYGEYD 53


>gi|167645630|ref|YP_001683293.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167348060|gb|ABZ70795.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 64

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +    + + + LA +  +   + N  +    +     PS    FKI     
Sbjct: 3  NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYD-----PSLPLAFKIARLFG 53


>gi|89891794|ref|ZP_01203296.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7]
 gi|89515949|gb|EAS18614.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 5/139 (3%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            +  ++   I ++ +   LT   L     ++  +  + +   +      P + +I  IL+
Sbjct: 1   MNQPELGNYIAQLRKEKGLTQEELVELCNINVRTIQRIENGDVT-----PRSYTIKNILS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           A  ++I  +                   LL +       +   G        + +    +
Sbjct: 56  ALGKSIDDVFKSVEKKAADLPAITYNKSLLGWGMIAGIIYLILGTLNVLVSISEMYHTVL 115

Query: 124 RSPHNGIYAIQTQDTRHKT 142
            SP     +I  +      
Sbjct: 116 VSPSVYGVSITMEYLTLTM 134


>gi|40063589|gb|AAR38378.1| helix-turn-helix domain protein [uncultured marine bacterium 582]
          Length = 121

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           + +    E   ++ S +A++ G+  ++  K ++   E R    S 
Sbjct: 5  GDRLAAAREHAAMSQSDMAKRLGVKVSTLRKWEQDLSEPRANRLSM 50


>gi|62317249|ref|YP_223102.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941]
 gi|83269230|ref|YP_418521.1| helix-hairpin-helix DNA-binding domain-containing protein
          [Brucella melitensis biovar Abortus 2308]
 gi|189022510|ref|YP_001932251.1| Helix-turn-helix motif [Brucella abortus S19]
 gi|237816809|ref|ZP_04595801.1| transcriptional regulator [Brucella abortus str. 2308 A]
 gi|254690756|ref|ZP_05154010.1| Helix-turn-helix motif [Brucella abortus bv. 6 str. 870]
 gi|254698535|ref|ZP_05160363.1| Helix-turn-helix motif [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731982|ref|ZP_05190560.1| Helix-turn-helix motif [Brucella abortus bv. 4 str. 292]
 gi|256255939|ref|ZP_05461475.1| Helix-turn-helix motif [Brucella abortus bv. 9 str. C68]
 gi|260544487|ref|ZP_05820308.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC
          8038]
 gi|260756327|ref|ZP_05868675.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260759755|ref|ZP_05872103.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762994|ref|ZP_05875326.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882151|ref|ZP_05893765.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297249296|ref|ZP_06932997.1| helix-hairpin-helix DNA-binding domain-containing protein
          [Brucella abortus bv. 5 str. B3196]
 gi|62197442|gb|AAX75741.1| transcriptional regulator, hypothetical [Brucella abortus bv. 1
          str. 9-941]
 gi|82939504|emb|CAJ12476.1| Helix-turn-helix motif:Cupin domain [Brucella melitensis biovar
          Abortus 2308]
 gi|189021084|gb|ACD73805.1| Helix-turn-helix motif [Brucella abortus S19]
 gi|237787622|gb|EEP61838.1| transcriptional regulator [Brucella abortus str. 2308 A]
 gi|260097758|gb|EEW81632.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC
          8038]
 gi|260670073|gb|EEX57013.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673415|gb|EEX60236.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676435|gb|EEX63256.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260871679|gb|EEX78748.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297173165|gb|EFH32529.1| helix-hairpin-helix DNA-binding domain-containing protein
          [Brucella abortus bv. 5 str. B3196]
          Length = 182

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +  R NL+    A++AG+  ++ +  +          PS  ++ +IL     
Sbjct: 4  DIGGRLRYVRMRQNLSQREFAKRAGVTNSTISLIEANQSN-----PSVGALKRILDGIPI 58

Query: 68 TICQLL 73
           + +  
Sbjct: 59 GMAEFF 64


>gi|89100265|ref|ZP_01173131.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911]
 gi|89085003|gb|EAR64138.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911]
          Length = 116

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  AI +  ER NLT   LA K  +  ++  K +    +     P T++I KI    +  
Sbjct: 4  IGLAIKQNRERLNLTQQELAVKLRIGTSTIEKYENGCQQ-----PDTQTILKISTILDVP 58

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
            +LL+  F+  +T    E E  LL  
Sbjct: 59 ASELLEHGFTACQTGLDPELEQLLLET 85


>gi|89071275|ref|ZP_01158446.1| transcriptional regulator, XRE family protein [Oceanicola
          granulosus HTCC2516]
 gi|89043205|gb|EAR49438.1| transcriptional regulator, XRE family protein [Oceanicola
          granulosus HTCC2516]
          Length = 134

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
           + +    E   L+   LAR+ G+   +    +    E R
Sbjct: 21 GDRLAAAREAAGLSQKDLARRLGVKHQTLKHWEDDIAEPR 60


>gi|323128283|gb|ADX25580.1| XRE family transcriptional regulator [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 155

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 17/50 (34%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
                +   +    +++ LT + LA +  +   + +K +        R 
Sbjct: 1  MDKQTILALKLKDYRDKNGLTQAQLAEQLEVSDKTISKWENGETYPSKRN 50


>gi|306821502|ref|ZP_07455104.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304550460|gb|EFM38449.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 73

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +D + +   LT    A+K  +   + +  +          PS +  F+I    N+T
Sbjct: 3  LKNKLDELRKLKGLTQEEFAKKLRVSRQTISAIENGKYN-----PSLDLAFEIAIYFNKT 57

Query: 69 ICQLLDLPFSDGRT 82
          I ++      D   
Sbjct: 58 IEEIFTYEKEDNHE 71


>gi|300715480|ref|YP_003740283.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061316|emb|CAX58425.1| transcriptional regulator [Erwinia billingiae Eb661]
          Length = 182

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ R   R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N  
Sbjct: 8  IAASLARERTRAGLSLAEVARRAGIAKSTLSQLESANGN-----PSIETLWALCGALNIP 62

Query: 69 I 69
           
Sbjct: 63 F 63


>gi|221639612|ref|YP_002525874.1| Helix-turn-helix domain-containing protein [Rhodobacter
          sphaeroides KD131]
 gi|221160393|gb|ACM01373.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides KD131]
          Length = 428

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+ +  ++ E       +  L  + LAR AG+  +  N  +        R    E + +
Sbjct: 3  MTALTGSRVRER----RLQLGLRQADLARAAGISASYLNLIEHN-----RRRIGDEVLAR 53

Query: 61 ILAAT 65
          +  A 
Sbjct: 54 LARAL 58


>gi|254386728|ref|ZP_05002021.1| regulatory protein [Streptomyces sp. Mg1]
 gi|194345566|gb|EDX26532.1| regulatory protein [Streptomyces sp. Mg1]
          Length = 197

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 13/161 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC-- 70
           +  +  R  LT    A +A L P   ++ +        R PS   +  +      T+   
Sbjct: 8   LRDLRRRAGLTLEAAATRARLSPAHLSRLETG-----RRQPSLPLLLGLARTYGTTVSEL 62

Query: 71  --QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG-VFPTGNKWNTVGVPEIRSPH 127
             +   +     R      +E     +  +G  G           +  +   +  +    
Sbjct: 63  LGETPAVADPIVRAGGPGAREADGWTYWQAGGSGRGMQALRVHVPHGRSQGELVRVHPGE 122

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCG 168
             +Y ++ +    +        L   GD    +S      G
Sbjct: 123 EWLYVLKGR---LRLHLGEAEHLLEPGDSAHFDSLTPHRIG 160


>gi|167577375|ref|ZP_02370249.1| hipB domain protein [Burkholderia thailandensis TXDOH]
          Length = 130

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +  ++   +  + +   LT + LAR+ G+   ++ + +     G     S E +F +L 
Sbjct: 10 RTLDQLQPILRGLRKSAGLTQAMLARRLGVTQQTYAQFE-----GNPASASVERLFNVLR 64

Query: 64 AT 65
          A 
Sbjct: 65 AL 66


>gi|108761825|ref|YP_633731.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108465705|gb|ABF90890.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 222

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ I   I    +   LT   LAR+ GL  +  ++ +R          S  S++KI +A 
Sbjct: 157 HRAIGRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSA-----SISSLYKIASAL 211

Query: 66  NETICQ 71
              + +
Sbjct: 212 QLRMGE 217


>gi|158320616|ref|YP_001513123.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140815|gb|ABW19127.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
           OhILAs]
          Length = 179

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I E I R+   + LT   LA++  L     +K +R         PS  ++  +L A   
Sbjct: 2   DIGEKIRRLRLLNELTQDELAQRCDLTKGFISKIERNIT-----SPSIATLMDLLEALGT 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPL-LYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
            + +  +          K++    +        S    ++           +  P   S 
Sbjct: 57  DVKKFFNEDVQSKIIFTKEDIYESVNEDLFHKVSWLIPNAQKNAMEPILIELD-PYGTSN 115

Query: 127 HNGIYAIQTQDTRHKTQ 143
               +  +      K  
Sbjct: 116 IEEPHKGEEFGYVLKGS 132


>gi|94497703|ref|ZP_01304271.1| transcriptional regulator, Cro/CI family protein [Sphingomonas
          sp. SKA58]
 gi|94422920|gb|EAT07953.1| transcriptional regulator, Cro/CI family protein [Sphingomonas
          sp. SKA58]
          Length = 69

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +    + +   LA + G+   S N  +    +     PS    F+I       I 
Sbjct: 3  NRLKLLRAERDWSQGELATRLGISRQSVNAIETGKYD-----PSLPLAFRIADLFALQIE 57

Query: 71 QLLDLPF 77
           +     
Sbjct: 58 DIFLRDE 64


>gi|86739596|ref|YP_479996.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566458|gb|ABD10267.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 116

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/108 (7%), Positives = 29/108 (26%), Gaps = 5/108 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +++ +   +   + + LA + GL  T+    +        +  +  +  ++    N  
Sbjct: 10  LAQSVRKHRRQRGWSQAALAERLGLTRTTITNIEHGA-----QGITLLTFVRLAEQLNVG 64

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
             +LL    +         +         +                 +
Sbjct: 65  APELLAEVIAGRPAPSAAPEAPGPYREWVASIASMPGDDNVSAHVADD 112


>gi|83952864|ref|ZP_00961594.1| DNA binding protein, putative [Roseovarius nubinhibens ISM]
 gi|83835999|gb|EAP75298.1| DNA binding protein, putative [Roseovarius nubinhibens ISM]
          Length = 284

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +     R  L+ + LAR+ G+D ++ ++          R P+ + + +  A    +   
Sbjct: 17 RLAEALRREGLSQTALARRIGVDRSTVSQLL---GSDGARLPNAQVVGECAAVLGVSADW 73


>gi|83942889|ref|ZP_00955349.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36]
 gi|83954060|ref|ZP_00962780.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841097|gb|EAP80267.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83845897|gb|EAP83774.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36]
          Length = 132

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +    E  ++T + LA++ G+  ++    +    E   R     ++  +L  +   
Sbjct: 16 GDRVAAARENADMTQAALAKRLGIKQSTLRGWEDDLSE--PRANRLSTLAGVLGVSMMW 72


>gi|189499690|ref|YP_001959160.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides
           BS1]
 gi|189495131|gb|ACE03679.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides
           BS1]
          Length = 115

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 17  AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76
                LT + +AR+ G+      + +    + ++  PS  ++ +   A    +   +   
Sbjct: 49  RTEAGLTQAEVARRMGVSQPVLARIESSLGK-QDHSPSLHTLRRYAEACGMELQIRMVKK 107

Query: 77  F 77
            
Sbjct: 108 E 108


>gi|320108135|ref|YP_004183725.1| helix-turn-helix domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319926656|gb|ADV83731.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4]
          Length = 178

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++  A+  +    NL+   LA + G+  T  +K +          P+  S+ ++  A   
Sbjct: 65  QVASAVRDLRLVRNLSQRQLAGRMGVPRTYISKIENGKA-----MPTIGSLERLARALQV 119

Query: 68  TICQ 71
            I  
Sbjct: 120 DISD 123


>gi|307277180|ref|ZP_07558284.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306506110|gb|EFM75276.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
          Length = 71

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 4/40 (10%), Positives = 13/40 (32%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
            + R  +    + + LA+K  +     +  +      + 
Sbjct: 5  SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKP 44


>gi|300854388|ref|YP_003779372.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434503|gb|ADK14270.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
          Length = 181

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 61/175 (34%), Gaps = 15/175 (8%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ +  +++   LA  A L     ++ +R         PS  +++KI  A N ++   
Sbjct: 7   IRKLRQEKSISIEQLAEMAKLSTGLISQVERNIT-----GPSVTTLWKIAKALNVSMNYF 61

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
            D    + +    ++ +  ++  P S       S       ++  V +         +  
Sbjct: 62  FDEDEYEEKDNVVRKDKRKMIILPNSKITYELLSPNIKGKIEYLLVEIDAGECNTKDLIC 121

Query: 133 IQTQDTRHKTQDT------SMLPLYRKGDILILNSAIQVNC----GDRLLIKPRT 177
            + ++  +  + T      +   +  +GD +  NS +         ++++     
Sbjct: 122 HEGEECGYIIKGTLKVKLGNKEHILEEGDSIYFNSNVPHRYINAGNEKVISIWAM 176


>gi|295096644|emb|CBK85734.1| Helix-turn-helix [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 75

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 16/41 (39%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          +++  A+ +  +   +T + LA   G   +   K +     
Sbjct: 10 QRVINALKKARKEKGITQAQLAEALGKPQSFIAKVESGERR 50


>gi|295093563|emb|CBK82654.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1]
          Length = 298

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          KI   I    +R  LT   LA K G    S +K +R  
Sbjct: 5  KIGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGI 42


>gi|229171786|ref|ZP_04299358.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3]
 gi|228611683|gb|EEK68933.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|225010022|ref|ZP_03700494.1| transcriptional regulator, XRE family [Flavobacteria bacterium
          MS024-3C]
 gi|225005501|gb|EEG43451.1| transcriptional regulator, XRE family [Flavobacteria bacterium
          MS024-3C]
          Length = 70

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H K+   ++++ +  +LT   L+ KA +   S N  +          PST    KI    
Sbjct: 5  HTKLLNNLEQLRKSCSLTQQELSIKAEVSRKSINAIENGVYV-----PSTLLALKISKTL 59

Query: 66 NETICQ 71
          N ++  
Sbjct: 60 NCSVED 65


>gi|254419929|ref|ZP_05033653.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3]
 gi|196186106|gb|EDX81082.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3]
          Length = 117

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I   I    E   +T + LA  AG+      K +R     R        I  +L +T 
Sbjct: 12 IGARIRARREELRITQAQLAAGAGVTFQQIQKYERGVN--RVSAARLLQIAAVLKSTG 67


>gi|168184227|ref|ZP_02618891.1| transcriptional regulator [Clostridium botulinum Bf]
 gi|182672749|gb|EDT84710.1| transcriptional regulator [Clostridium botulinum Bf]
          Length = 136

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + + I ++ +  N+T   L +  G+  +     +        R PS E + KI    
Sbjct: 2  LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNA-----RKPSYEVLIKIAEFF 53


>gi|163815728|ref|ZP_02207100.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC
          27759]
 gi|158449033|gb|EDP26028.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC
          27759]
          Length = 298

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          KI   I    +R  LT   LA K G    S +K +R  
Sbjct: 5  KIGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGI 42


>gi|116695076|ref|YP_840652.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113529575|emb|CAJ95922.1| transcriptional regulator [Ralstonia eutropha H16]
          Length = 245

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 19/42 (45%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          +   +   + +    +    T + LA  +G+  T+ ++++R 
Sbjct: 22 TLDRETFGKRLRAARKAFGWTLAHLAELSGVSITTISRAERG 63


>gi|82592707|gb|ABB84523.1| DigR [Myxococcus xanthus]
          Length = 197

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ I   I    +   LT   LAR+ GL  +  ++ +R          S  S++KI +A 
Sbjct: 132 HRAIGRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSA-----SISSLYKIASAL 186

Query: 66  NETICQ 71
              + +
Sbjct: 187 QLRMGE 192


>gi|21228997|ref|NP_634919.1| transcriptional regulator [Methanosarcina mazei Go1]
 gi|20907540|gb|AAM32591.1| transcriptional regulator [Methanosarcina mazei Go1]
          Length = 68

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  +  RH+LT   LA   G+   +    ++         PS +   +I  + + TI +
Sbjct: 4  RIKELRARHDLTQEALANLVGVRRETIVFLEKGKYN-----PSLKLACRIARSLDTTIDE 58

Query: 72 LLDLPFSDGR 81
          L     +D  
Sbjct: 59 LFIFEDTDFE 68


>gi|115351079|ref|YP_772918.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281067|gb|ABI86584.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD]
          Length = 219

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +++I   +  +      T   LA ++G+  +  +  +R         P+   + K+ A  
Sbjct: 15  NERIARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASA-----SPTAVVLDKLAAGL 69

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
             ++  L      D        +     +  P+    
Sbjct: 70  GVSLAGLFGGERDDAPAQPLVRRAQQAEWRDPASGYV 106


>gi|152966423|ref|YP_001362207.1| XRE family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151360940|gb|ABS03943.1| transcriptional regulator, XRE family [Kineococcus radiotolerans
          SRS30216]
          Length = 109

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +     +T   LA   G++  +    +R         PS E   ++     
Sbjct: 15 NRLAVLRAERGITRRQLAEAVGVNVQTIGFLERGDY-----GPSVELALRLAGHFG 65


>gi|317406552|gb|EFV86747.1| hypothetical protein HMPREF0005_04959 [Achromobacter xylosoxidans
           C54]
          Length = 184

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 15/149 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M    H      +  +  + +L+   L  + GL  +  +K +R   E     PS  ++ +
Sbjct: 1   MIDLPH-----RLRALRRQQSLSLEQLGERTGLTKSYLSKLERGLSE-----PSISTVLR 50

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----TGNKWN 116
           +  A    + QL+    +         +            G  +                
Sbjct: 51  LAEAYGVGVSQLVGGDGAAQDEVVSLVRVADREALQRRDLGTEYHYESLAGRRKVKAMEP 110

Query: 117 TVGVPEIRSPHNGI-YAIQTQDTRHKTQD 144
            +  P    P     +    ++     + 
Sbjct: 111 FIVHPPREFPDAAAVFPHPGEEFLLVLKG 139


>gi|296876651|ref|ZP_06900699.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC
          15912]
 gi|296432153|gb|EFH17952.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC
          15912]
          Length = 295

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + ++  ++   LA K G+   +  K +          P  E++  I    N +I 
Sbjct: 5  EKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGI-----PDIENMISISNLFNISID 59

Query: 71 QLLDLPF 77
          +L+    
Sbjct: 60 ELICNER 66


>gi|317127194|ref|YP_004093476.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315472142|gb|ADU28745.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 207

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I+   +  NL+   +A + G+   + +K +    +     PST+++ K+       
Sbjct: 3   LGSNINNKRKSLNLSQEYVADQLGVSRQAVSKWENNLSK-----PSTQNLIKMATLFECD 57

Query: 69  ICQ----LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP-TGNKWNTVGV 120
           I +       +        + + K+   ++   +    F   G     G   ++  +
Sbjct: 58  IKELVSSDKFMEKQKNLENQTESKKDIRMHMAAAFGRVFMLVGSLGFMGAISDSADL 114


>gi|257440134|ref|ZP_05615889.1| transcriptional regulator, AraC family [Faecalibacterium
          prausnitzii A2-165]
 gi|257197486|gb|EEU95770.1| transcriptional regulator, AraC family [Faecalibacterium
          prausnitzii A2-165]
          Length = 109

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I    E+   T   L+   G+ P   +  +R          S E++ ++      
Sbjct: 10 EIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGAS-----GISLEALQRLCRLLGI 64

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  +++              + I  +
Sbjct: 65 SADRIIFGTDEPEAEALALARRISDI 90


>gi|255263387|ref|ZP_05342729.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62]
 gi|255105722|gb|EET48396.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62]
          Length = 139

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + +    E+  L+   LA++ G+   +    +    E   R    + +  IL  +   
Sbjct: 26 GDRVAAAREQAGLSQEALAKQLGIKNGTLRNWEHDLNE--PRANKLQMLSGILGVSLMW 82


>gi|254295299|ref|YP_003061322.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043830|gb|ACT60625.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814]
          Length = 194

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 40/135 (29%), Gaps = 6/135 (4%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE------GRNRWPST 55
            SF+   + + +  +    N +   LA  +G+   +  + ++  +       G+      
Sbjct: 12  PSFTDADLAQRLKELRAEQNWSLDQLAEISGISRGTLFRLEKGEVSPTAHVLGKLCPAYG 71

Query: 56  ESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            ++ +++A        L+               +   +  P +   G         G   
Sbjct: 72  LTMSRLMAMVETQFSALIPRGEQKIWYDADYSFKRKSVSPPSTNLSGEVIECELIAGASI 131

Query: 116 NTVGVPEIRSPHNGI 130
           +    P     H+ I
Sbjct: 132 SYDKPPRRGLEHHLI 146


>gi|253995592|ref|YP_003047656.1| XRE family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253982271|gb|ACT47129.1| transcriptional regulator, XRE family [Methylotenera mobilis JLW8]
          Length = 114

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ++I ++I +      LT   ++ K G+   + ++ +R         P+   + ++     
Sbjct: 11  EQIGQSIAKRRLAAGLTQDQVSEKLGIGYEAVSRMERGVTI-----PTVIRLAELAEIFG 65

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
             I +LL           ++ K +         +   
Sbjct: 66  CGIQELLIESSDRPDDQAEQIKSMLAKLNSEDRNMIL 102


>gi|229070774|ref|ZP_04204003.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185]
 gi|228712353|gb|EEL64299.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/202 (9%), Positives = 55/202 (27%), Gaps = 16/202 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +   +T   LA   G+   S +K +         +P    +  + +  N +
Sbjct: 6   IHKIIADKRKEKGITQEELATYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I +L+       +   K         F                   ++   +        
Sbjct: 61  IDELISYTPQMKQEDIKNLYHRLAEAFSEKTFDEVMIECRGIIKKYYSCFPL------LL 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLIS 187
            +  +              + +  +   L      +    D  L+ +  +      ++++
Sbjct: 115 QMGLLFINHHMLTEDTDKKIEILEEAMSLFSRVQEE--SDDVSLVKEAISFQATCYLILN 172

Query: 188 RRGRSIDLMSLN--CCYPVDTV 207
           +    + L+       +P + +
Sbjct: 173 KPNEVLQLLGETIRPNFPEEDL 194


>gi|257125626|ref|YP_003163740.1| XRE family transcriptional regulator [Leptotrichia buccalis
          C-1013-b]
 gi|257049565|gb|ACV38749.1| transcriptional regulator, XRE family [Leptotrichia buccalis
          C-1013-b]
          Length = 91

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +I   I    +  N+T   L+   G+     +K +          PS +++ K+ AA 
Sbjct: 30 QIIREIISARKDKNITQKELSDLTGITQGDISKIENGNAN-----PSLKTLKKLAAAF 82


>gi|227431633|ref|ZP_03913669.1| possible signal peptidase I [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352625|gb|EEJ42815.1| possible signal peptidase I [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 207

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--------KPRTGDIVAKVLISRRGR 191
            K    SM P  +  + + LN       GD ++              D   K +I+  G 
Sbjct: 31  VKVSGPSMEPNLQDNENVFLNKVASYKRGDVIVFNAKDEDPRYQSGDDKYVKRIIAIPGD 90

Query: 192 SIDLMSLN 199
           +++  + N
Sbjct: 91  TVEYKASN 98


>gi|227553220|ref|ZP_03983269.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|307291409|ref|ZP_07571293.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0411]
 gi|312904166|ref|ZP_07763334.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0635]
 gi|227177586|gb|EEI58558.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|306497640|gb|EFM67173.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0411]
 gi|310632642|gb|EFQ15925.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0635]
 gi|315029956|gb|EFT41888.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX4000]
          Length = 107

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             +  + ++  LT + +A   G+  T+++  ++       R P  +   KI    N ++
Sbjct: 3  GTRLTELRKQKKLTQTDVANALGVARTTYSSYEQG-----RRTPDIDIQNKIADYFNVSL 57

Query: 70 CQLLDLPFS 78
            L      
Sbjct: 58 DYLHGRESF 66


>gi|238853357|ref|ZP_04643737.1| conserved domain protein [Lactobacillus gasseri 202-4]
 gi|282852340|ref|ZP_06261682.1| DNA-binding protein [Lactobacillus gasseri 224-1]
 gi|311111561|ref|ZP_07712958.1| transcriptional regulator, XRE family [Lactobacillus gasseri
          MV-22]
 gi|238834045|gb|EEQ26302.1| conserved domain protein [Lactobacillus gasseri 202-4]
 gi|282556082|gb|EFB61702.1| DNA-binding protein [Lactobacillus gasseri 224-1]
 gi|311066715|gb|EFQ47055.1| transcriptional regulator, XRE family [Lactobacillus gasseri
          MV-22]
          Length = 64

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
             +    ++  L+   LA++  +   + N  +          PS +   K+    
Sbjct: 1  MNRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYN-----PSLDLCLKLAHEL 51


>gi|239820608|ref|YP_002947793.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805461|gb|ACS22527.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 81

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  AI  + + H ++   LA ++ +D +  +  +R         P   ++ +I A    +
Sbjct: 17 LGTAIKALRKTHGISQEELAHRSHVDRSYMSSIERGMQN-----PGVMTVVQIAAGLGVS 71

Query: 69 ICQ 71
          + +
Sbjct: 72 VAE 74


>gi|254464799|ref|ZP_05078210.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
           Y4I]
 gi|206685707|gb|EDZ46189.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
           Y4I]
          Length = 178

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 53/213 (24%), Gaps = 42/213 (19%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I    +   LT    A+ A +  ++ +K +          PS E I +++        QL
Sbjct: 2   IRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTR-----PSFEIIRRLMQTLELETPQL 56

Query: 73  LDLPFSDGRTTEKKE-KEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                  G T  +   +     +   +            +      +   + R       
Sbjct: 57  FLQSGQSGVTGRRDFTRTGEGEHKETATYDHELLCSELTSKRMVPYISTIKARDVTEF-- 114

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVAKVLISRR 189
                D   + Q    + +     IL       +    GD +      G           
Sbjct: 115 -----DNWVRHQGEEFMFVLSGEVILYTEHYRPLRMGPGDSVYYDSGMGHGCV------- 162

Query: 190 GRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
                           +V   D    A++LW S
Sbjct: 163 ----------------SVSAED----AKVLWVS 175


>gi|170754718|ref|YP_001779994.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169119930|gb|ACA43766.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 181

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I E I  + +  NLT   L+ K GL  +  ++ +           +  S+ KI  A N
Sbjct: 3   NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSS-----SLAITSLKKIADALN 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I      P       +K+E+E  +     S S     SG F      + + V      
Sbjct: 58  VPITYFFKSPELHKFLVKKQERE--VFELEGSSSKFIKLSGNFTERAMESILVVIPAEKQ 115

Query: 127 HNGIYAIQTQDTRHKTQD 144
           H   ++   ++  +  + 
Sbjct: 116 HGHKFSHPGEEFIYVLEG 133


>gi|153941053|ref|YP_001389709.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936949|gb|ABS42447.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295317797|gb|ADF98174.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 181

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +I E I  + +  NLT   L+ K GL  +  ++ +           +  S+ KI  A N
Sbjct: 3   NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSS-----SLAITSLKKIADALN 57

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I      P       +K+E+E  +     S S     SG F      + + V      
Sbjct: 58  VPITYFFKSPELHKFLVKKQERE--VFELEGSSSKFIKLSGNFTERAMESILVVIPAEKQ 115

Query: 127 HNGIYAIQTQDTRHKTQD 144
           H   ++   ++  +  + 
Sbjct: 116 HGHKFSHPGEEFIYVLEG 133


>gi|149921216|ref|ZP_01909673.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149817987|gb|EDM77447.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  + +    T   LA+KA L P +  + +          PS +++  + +  N
Sbjct: 17 LKSLRKARGYTQEALAKKAKLSPDTIRRLEAGSF-----SPSLDTLKSVASGFN 65


>gi|157959968|ref|YP_001500002.1| XRE family transcriptional regulator [Shewanella pealeana ATCC
          700345]
 gi|157844968|gb|ABV85467.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC
          700345]
          Length = 69

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +  +    + T + LA K  +   + N  ++   +     PS    FK+       
Sbjct: 3  NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYD-----PSLPLAFKVARLFEMP 55


>gi|116618311|ref|YP_818682.1| Signal peptidase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097158|gb|ABJ62309.1| type I signal peptidase, Serine peptidase, MEROPS family S26A
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 207

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI--------KPRTGDIVAKVLISRRGR 191
            K    SM P  +  + + LN       GD ++              D   K +I+  G 
Sbjct: 31  VKVSGPSMEPNLQDNENVFLNKVASYKRGDVIVFNAKDEDPRYQSGDDKYVKRIIAIPGD 90

Query: 192 SIDLMSLN 199
           +++  + N
Sbjct: 91  TVEYKASN 98


>gi|152975865|ref|YP_001375382.1| XRE family transcriptional regulator [Bacillus cereus subsp.
          cytotoxis NVH 391-98]
 gi|152024617|gb|ABS22387.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH
          391-98]
          Length = 66

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I     R ++T   LA++ G+   + +  ++         PS +    I      TI ++
Sbjct: 7  IKEARARLHMTQEDLAKRVGVRRETISHLEKGKYN-----PSLQLAHDIAKTLQTTIDEI 61

Query: 73 LDLPF 77
               
Sbjct: 62 FIFDE 66


>gi|85709950|ref|ZP_01041015.1| transcriptional regulator, Cro/CI family protein [Erythrobacter
          sp. NAP1]
 gi|85688660|gb|EAQ28664.1| transcriptional regulator, Cro/CI family protein [Erythrobacter
          sp. NAP1]
          Length = 63

 Score = 42.8 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 5/38 (13%), Positives = 14/38 (36%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
            +  +    + +   LA + G+   S N  ++   + 
Sbjct: 3  NRLKVLRAERDWSQQDLADRLGVSRQSVNAIEKGRYDP 40


>gi|332559092|ref|ZP_08413414.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
 gi|332276804|gb|EGJ22119.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
          Length = 152

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  +  +  L  + LAR+AG+   ++N+  R         P  + +  +          
Sbjct: 25 RIQELTAKAGLPQAELARRAGMSRDAYNRYYRGLTR-----PPVKQLIILAELFGVAPTD 79

Query: 72 LLDLPFSDGRTTEKKEKEIP 91
          +           +   +   
Sbjct: 80 IDPDRAGLVALEDASHRSYE 99


>gi|325263075|ref|ZP_08129810.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324031468|gb|EGB92748.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 80

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   + ++ +  N+T + LA  +G+  ++          G+ + P  +++ K+      T
Sbjct: 7  IILRLTQLCDEKNITINKLATLSGITQSTVENIM----SGKTKNPKLKTLHKLALGLGMT 62

Query: 69 ICQLLDLPFSD 79
          + +LLD P  +
Sbjct: 63 VSELLDFPEMN 73


>gi|319936625|ref|ZP_08011038.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1]
 gi|319808182|gb|EFW04747.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 16/48 (33%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
             I  + E+  LT      K G+   + ++ ++       +     S
Sbjct: 1  MSKIKELREQCGLTQEEFGDKIGMSQQTVSRIEKNIDSLDIKTLKIIS 48


>gi|260901786|ref|ZP_05910181.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308108085|gb|EFO45625.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + + +  A+ +  +   LT   L+ K G+  ++F   KR                +
Sbjct: 1   MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            +  T + + +L +    +      + ++     FP     
Sbjct: 58  AIDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98


>gi|257056813|ref|YP_003134645.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256586685|gb|ACU97818.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 475

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +  + E  +++ + LAR   + P+  N+ +        R  +   + +I  A  
Sbjct: 7  GARLRHLRESRSMSQAELARLLEISPSYLNQIEHNT-----RPLTVPVLLRITEAFG 58


>gi|261820696|ref|YP_003258802.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261604709|gb|ACX87195.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 96

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           I +AI     R  ++ + LA KA    +  +  +        R P+  ++ KI  A 
Sbjct: 2  NIGQAIKLCRTRRGISQTDLANKAECSVSYLSMLENN-----KRDPTLSTLTKIATAL 54


>gi|238927790|ref|ZP_04659550.1| hypothetical protein HMPREF0908_1690 [Selenomonas flueggei ATCC
           43531]
 gi|238884337|gb|EEQ47975.1| hypothetical protein HMPREF0908_1690 [Selenomonas flueggei ATCC
           43531]
          Length = 106

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 3/97 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+I   I        L    LA K G+  +  ++ +R       +  S   +  I     
Sbjct: 10  KQIGAKIAYYRTLRGLHQVVLAEKIGISSSVLSRIERGKYN---KNISISMLLDIAEGLG 66

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
             +   +     +        ++        +   G 
Sbjct: 67  VDVSMFVTFDEHEKAMWGDPYQQEYSRAHRQNKFQGE 103


>gi|238027641|ref|YP_002911872.1| XRE family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237876835|gb|ACR29168.1| Transcriptional regulator, XRE family protein [Burkholderia
          glumae BGR1]
          Length = 78

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + +  +L+ + +A + G+  ++ ++ +R   +     P  E+  +++       
Sbjct: 1  MNNIRHLRKSLSLSQAEMAEQIGVTQSALSQYERQLCD-----PVIETARRMIVYAGSLG 55

Query: 70 CQLLDLPFSDGRTTEKKEK 88
                         +  +
Sbjct: 56 ATWTLDQIYSDPPLAEPAQ 74


>gi|254519524|ref|ZP_05131580.1| DNA-binding protein [Clostridium sp. 7_2_43FAA]
 gi|226913273|gb|EEH98474.1| DNA-binding protein [Clostridium sp. 7_2_43FAA]
          Length = 349

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR-WPSTESIFKILAATN 66
          KI E I        LT   +A   G+   + NK ++          P+   + ++   T 
Sbjct: 2  KINEIIKERRIDQGLTQEQVAEALGVSTPAVNKWEKGISYPDITILPALARLLRVDLNTL 61

Query: 67 ETICQLLDLPFSDG 80
           +  + +       
Sbjct: 62 LSFKEDVTDIEIGH 75


>gi|226324586|ref|ZP_03800104.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758]
 gi|225207034|gb|EEG89388.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758]
          Length = 179

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + +  +    NLT   LA ++ L     ++ +R         PS  ++  IL     
Sbjct: 2  NIGQKVRELRIAKNLTQEELADRSELSKGFISQLERDLT-----SPSIATLVDILQCLGT 56

Query: 68 TICQLLDLPF 77
           + +      
Sbjct: 57 NLNEFFSDDE 66


>gi|218709441|ref|YP_002417062.1| hypothetical protein VS_1450 [Vibrio splendidus LGP32]
 gi|218322460|emb|CAV18613.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 142

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +       NL+   +AR  G+   ++ K +    E     P    I K+      T
Sbjct: 21 IGSVLKEARALKNLSQPEVARLVGVTKQTYLKWENDTTE-----PKATQISKLAKVLGIT 75

Query: 69 ICQLLD 74
            ++ +
Sbjct: 76 SDEICN 81


>gi|254472908|ref|ZP_05086307.1| transcriptional regulator, XRE family [Pseudovibrio sp. JE062]
 gi|211958372|gb|EEA93573.1| transcriptional regulator, XRE family [Pseudovibrio sp. JE062]
          Length = 283

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +     + ++T S LAR AG+D ++  +     I    R P+++ +  + A+   +  
Sbjct: 16  NRLTEAMAQADVTRSQLARNAGVDRSTIGQLLNNEI---PRLPNSQLLADLAASLGVSAD 72

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
            LL L     R  +     + +     S       +  
Sbjct: 73  WLLGLTNRPERPGDIIAAAMAMSPAERSSVDEQILNWH 110


>gi|170746831|ref|YP_001753091.1| XRE family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653353|gb|ACB22408.1| transcriptional regulator, XRE family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 359

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 22/61 (36%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I        L+   LA +A +  ++ N+ +      R RW +  ++ + L      
Sbjct: 286 IPSQIRSARAITGLSKDELAARANVSVSTLNRLEDPTSAVRPRWDTLLAVRRALEEAGVE 345

Query: 69  I 69
            
Sbjct: 346 F 346


>gi|196032247|ref|ZP_03099661.1| DNA-binding protein [Bacillus cereus W]
 gi|228915928|ref|ZP_04079503.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|195994998|gb|EDX58952.1| DNA-binding protein [Bacillus cereus W]
 gi|228843746|gb|EEM88820.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+       +   K         F            
Sbjct: 56  YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99


>gi|153940476|ref|YP_001390199.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936372|gb|ABS41870.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
          Length = 373

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 43/157 (27%), Gaps = 12/157 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I + I    +   +T   LA   G+   S +K +         +P    + ++    N 
Sbjct: 5   NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLS-----YPDILFLPELATYFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++ +LL       +   KK        F         +         ++           
Sbjct: 60  SVDELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKYYSCFPFLLSIIQL 119

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ 164
              Y+          ++ ++     +  IL+     +
Sbjct: 120 LLNYSN-------LIKNDAIKKEIFQQCILLSRRIKE 149


>gi|148274004|ref|YP_001223565.1| Cro/CI family transcriptional regulator [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
 gi|147831934|emb|CAN02905.1| putative transcriptional regulator, Cro/CI family [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
          Length = 68

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +     L+   LA   G+   + N  +    +     PS     K     + ++ ++
Sbjct: 8  VRGLRTAAGLSQQSLADALGVSRQTINAIETGRYD-----PSLALAVKAARFFHRSVEEV 62

Query: 73 LDLPF 77
            +  
Sbjct: 63 FHVED 67


>gi|55377330|ref|YP_135180.1| transcription regulator [Haloarcula marismortui ATCC 43049]
 gi|55230055|gb|AAV45474.1| transcription regulator [Haloarcula marismortui ATCC 43049]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 38/153 (24%), Gaps = 16/153 (10%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +        LT S LA +A +      + +     G +  P   ++ +I+ A  E    +
Sbjct: 9   LRERRNELGLTQSELAERADVSQPLIARIE-----GGDVDPRLSTLRRIVTALEEAEGGI 63

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           +                        +       +        ++ V V    +P   I  
Sbjct: 64  IKARDLMNSPV-----------VGVAPDDSVHQTKDLMDEKGYSQVPVIRDGAPQGLIGN 112

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQV 165
              +    +      +       I  +     +
Sbjct: 113 SDIRQRPEENVGDLPVAEVMNESIATVEPDAPI 145


>gi|85544221|pdb|2B5A|A Chain A, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|85544222|pdb|2B5A|B Chain B, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|85544223|pdb|2B5A|C Chain C, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|85544224|pdb|2B5A|D Chain D, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|311977251|gb|ADQ20505.1| C.BclI [Bacillus caldolyticus]
          Length = 77

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             + ++  +  ++   LA  AGL  T  ++ +R      +R  S  +I KI AA +   
Sbjct: 12 GRTLKKIRTQKGVSQEELADLAGLHRTYISEVERG-----DRNISLINIHKICAALDIPA 66

Query: 70 CQLLDLPF 77
                  
Sbjct: 67 STFFRKME 74


>gi|28898058|ref|NP_797663.1| hypothetical protein VP1284 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839394|ref|ZP_01992061.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|260366360|ref|ZP_05778799.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260878408|ref|ZP_05890763.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260896987|ref|ZP_05905483.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|28806272|dbj|BAC59547.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747089|gb|EDM58077.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|308087743|gb|EFO37438.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|308091250|gb|EFO40945.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308113163|gb|EFO50703.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|328472984|gb|EGF43832.1| hypothetical protein VP10329_19920 [Vibrio parahaemolyticus 10329]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + + +  A+ +  +   LT   L+ K G+  ++F   KR                +
Sbjct: 1   MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            +  T + + +L +    +      + ++     FP     
Sbjct: 58  AIDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98


>gi|121582747|ref|YP_973189.1| XRE family transcriptional regulator [Polaromonas
          naphthalenivorans CJ2]
 gi|120596009|gb|ABM39447.1| transcriptional regulator, XRE family [Polaromonas
          naphthalenivorans CJ2]
          Length = 98

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            A+  +     +    LA  AG++ +   K +R         P+   I KI  A   + 
Sbjct: 26 GAAVRALRTEQGVAQETLAHLAGIERSHMGKIERGE-----HMPTLAIILKIARALGCSS 80

Query: 70 CQLLDLPFSDGRTTEKK 86
            L+    S    +E +
Sbjct: 81 ADLMTATESRLTASEPE 97


>gi|186687142|ref|YP_001870285.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102]
 gi|186469445|gb|ACC85244.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC
           73102]
          Length = 116

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +  E   L+ + LARK G    +  K ++    GR    + +++ +           +
Sbjct: 7   LKKTREAKGLSQNELARKTGYSLQNIQKIEQ----GRAASITFDALGRFCEVLECQPGDI 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
           L+   ++            +L        G
Sbjct: 63  LEWRPNNIDDKTGHSSNDEVLKTASEEVEG 92


>gi|330891950|gb|EGH24611.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          mori str. 301020]
          Length = 109

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +  +     L  S +A     +P + ++ +R         P+ E + ++      +
Sbjct: 5  VAARLKLLRTGKGLKQSEVAELIDCEPNTISRYERAET-----MPNIEDLLRLADLFGVS 59

Query: 69 ICQLLDLPFSDGRTTE 84
            ++L    S  +   
Sbjct: 60 PMEILPPQDSITQRIH 75


>gi|326692328|ref|ZP_08229333.1| hypothetical protein LargK3_00985 [Leuconostoc argentinum KCTC
           3773]
          Length = 241

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 14/155 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  + +   LT   LA    +   + +  +R   +     P+ + +  IL      
Sbjct: 3   IGHQIKLLRQSKGLTQRDLADTLYISYQAVSNWERHQSQ-----PTADMLLAILEK---- 53

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                D   +  +    +EKE  L  F  S          + T  ++  + +      H 
Sbjct: 54  YHLPHDFFITQSKQQCTQEKEQILRGFLESLMYCASKPPSYATIAQFANLSI-AQICQHF 112

Query: 129 GIYAIQTQDTRHKTQDTS----MLPLYRKGDILIL 159
             Y            D       + L    D++ +
Sbjct: 113 PNYEALVNQFMVTVDDQIKPTVEMHLIAHEDLITI 147


>gi|315645386|ref|ZP_07898510.1| XRE family transcriptional regulator [Paenibacillus vortex V453]
 gi|315278864|gb|EFU42174.1| XRE family transcriptional regulator [Paenibacillus vortex V453]
          Length = 106

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  AI  + +  NLT   LA K G   +   + +R          + +++ KI  A N  
Sbjct: 9  LGIAIREIRKNQNLTQEELAEKIGSSFSYIGRLERGEGN-----FTVQTLEKITTALNID 63

Query: 69 ICQLL 73
              +
Sbjct: 64 FFDFM 68


>gi|315174233|gb|EFU18250.1| helix-turn-helix protein [Enterococcus faecalis TX1346]
          Length = 394

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFDQLESFNPD 64


>gi|314940599|ref|ZP_07847731.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
 gi|313640219|gb|EFS04800.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
          Length = 394

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFDQLESFNPD 64


>gi|270261649|ref|ZP_06189922.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270045133|gb|EFA18224.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 187

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S   + + +  +  +   + +  A   G+      + +R         P+  +++K
Sbjct: 1  MQELSG-HLAQTLKSLRAQRGWSLAQAAENTGVSKAMLGQIERGES-----SPTVATLWK 54

Query: 61 ILAATN 66
          I    N
Sbjct: 55 IATGFN 60


>gi|153810580|ref|ZP_01963248.1| hypothetical protein RUMOBE_00961 [Ruminococcus obeum ATCC 29174]
 gi|149833759|gb|EDM88840.1| hypothetical protein RUMOBE_00961 [Ruminococcus obeum ATCC 29174]
          Length = 139

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 6/123 (4%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
           +++ +++ +T   +A++AG+  T+ +  K          P+T+++ KI      TI  L+
Sbjct: 6   EQLLQKNGVTSYKVAKEAGVTQTALSNWKSGRST-----PTTKTLQKIADYFGVTIDYLM 60

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRSPHNGIYA 132
                        +    +     S           P   N                  A
Sbjct: 61  TGKDISAPQELTAKDNRDIAKDLDSIMEKLTSGEDGPASYNGEELSPEAAELFRDELEIA 120

Query: 133 IQT 135
           ++ 
Sbjct: 121 LKR 123


>gi|149189925|ref|ZP_01868204.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii
           AK1]
 gi|148836240|gb|EDL53198.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii
           AK1]
          Length = 179

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 10/104 (9%), Positives = 32/104 (30%), Gaps = 5/104 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + ++ +   L+    A+  G+      + +R         P+  +++KI +    
Sbjct: 9   QIAAHLKQIRKHKGLSLDATAKLTGVSKAMLGQIERGES-----SPTISTLWKISSGLEA 63

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +             +     ++  +L           +  +F  
Sbjct: 64  SFSGFFANDPVLRDSEMTFPEDENMLVNTLFPYTSDTNMEMFEI 107


>gi|189424698|ref|YP_001951875.1| XRE family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189420957|gb|ACD95355.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ]
          Length = 68

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + E+  ++ S LARKAG+   + ++ +R            E++ KI+ A   T+ 
Sbjct: 5  NNVKILREKKLMSKSELARKAGVSTVTIDRIERGESC------RLETMRKIILALGYTLE 58

Query: 71 QLLDLPFSD 79
              +    
Sbjct: 59 DRDKVFQEQ 67


>gi|260906742|ref|ZP_05915064.1| transcriptional regulator, XRE family protein [Brevibacterium
          linens BL2]
          Length = 69

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + +   LT + LA++ G+   +   ++R         PS     +I  +   T+ 
Sbjct: 6  SNLKHVRKAAGLTQAQLAQRTGVSRQTIIATERGDY-----APSVYLALRIARSLETTVE 60

Query: 71 QLLDLPF 77
          ++  L  
Sbjct: 61 EIFSLQE 67


>gi|56696323|ref|YP_166680.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56678060|gb|AAV94726.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 283

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 4/113 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +  + + R  E    T S LAR  G+D ++ ++      +   R P+   +    +A   
Sbjct: 9   QFRQRLARAMELRQATQSALARAVGVDRSTISQLL---TDSGARLPNGHVVGACASALGV 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV-FPTGNKWNTVG 119
           +   LL L        E     + +   P +              G K   V 
Sbjct: 66  SADWLLGLSDRPESAAELLALSMTMTEAPRALVDERIYDWHREAAGYKIRYVP 118


>gi|16801484|ref|NP_471752.1| hypothetical protein lin2422 [Listeria innocua Clip11262]
 gi|16414944|emb|CAC97649.1| lin2422 [Listeria innocua Clip11262]
          Length = 160

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 5/125 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E I  + E+ N++   LA + G++ +  N+ +        R      +  I    + 
Sbjct: 2   KVNEMIINLREKRNISQRELANRIGINKSVMNRIESGE-----RDIRAHELEAIANYFDV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +   LL     +           P            +             + + +I +  
Sbjct: 57  SADYLLGRSKQNDIADTIAAHIDPNATEEEMEEILAYIEEKRKEYANEEEIDITDIAAKK 116

Query: 128 NGIYA 132
           +   A
Sbjct: 117 DADVA 121


>gi|332202990|gb|EGJ17058.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47901]
          Length = 164

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 18/41 (43%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
             I ++ + +NLT   LA +  +   +  + +    + ++
Sbjct: 1  MNRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKS 41


>gi|325698118|gb|EGD39999.1| transcriptional regulator [Streptococcus sanguinis SK160]
 gi|332358835|gb|EGJ36657.1| transcriptional regulator [Streptococcus sanguinis SK1056]
          Length = 74

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MARESKIITNLKSVRESMGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|301794241|emb|CBW36661.1| Phage transcriptional regulator [Streptococcus pneumoniae INV104]
          Length = 167

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 18/41 (43%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
             I ++ + +NLT   LA +  +   +  + +    + ++
Sbjct: 4  MNRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKS 44


>gi|254708272|ref|ZP_05170100.1| hypothetical protein BpinM_15273 [Brucella pinnipedialis
          M163/99/10]
          Length = 42

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 4  FSHKKIWE--AIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43
           S +KI+    I R+     LT + +A   G+ P+  N  +R
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIER 42


>gi|229189224|ref|ZP_04316248.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876]
 gi|228594268|gb|EEK52063.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRGDEELTQKVIEDSKQLAYPKW 84


>gi|154503561|ref|ZP_02040621.1| hypothetical protein RUMGNA_01385 [Ruminococcus gnavus ATCC
          29149]
 gi|153795661|gb|EDN78081.1| hypothetical protein RUMGNA_01385 [Ruminococcus gnavus ATCC
          29149]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 1  MTSFS---HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          M        KK+   +    ER  L+ S LA +AG+   + +  +          P   +
Sbjct: 1  MRMLMDTVKKKLGYMVRSERERRGLSQSRLAEQAGVSTRTISDIETCNGN-----PELAT 55

Query: 58 IFKILAATNET 68
          +  I    N +
Sbjct: 56 LIPIAQFLNIS 66


>gi|148360195|ref|YP_001251402.1| IS652 transposase [Legionella pneumophila str. Corby]
 gi|148281968|gb|ABQ56056.1| transposase (IS652) [Legionella pneumophila str. Corby]
          Length = 391

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/185 (10%), Positives = 56/185 (30%), Gaps = 7/185 (3%)

Query: 11  EAIDRMAER------HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            A + + ++        ++   LAR   L  ++  +   +G E R +  +T S  ++L  
Sbjct: 94  RASESLRKQVFHYHSKGVSQKDLARDLKLGKSAVERWYHYGYELRYKKIATRSCPRVLGL 153

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIR 124
              +  + +    +     + K     +         G+ ++       +   + +    
Sbjct: 154 DEHSFNRKVGYATTFCDLAKHKI-FDVVEGRSEKDLEGYLNTLEGKDKVQVVCIDLSSSY 212

Query: 125 SPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
                 Y         +     +L  +       ++  ++   G    ++    ++  K 
Sbjct: 213 RKLIRRYFPNAMIVAVRFHVIRLLNQFCLQTYQQIDPEMKYQRGLLAALRTNPNNLSVKR 272

Query: 185 LISRR 189
           L  R 
Sbjct: 273 LNKRE 277


>gi|114775570|ref|ZP_01451138.1| hypothetical protein SPV1_04558 [Mariprofundus ferrooxydans PV-1]
 gi|114553681|gb|EAU56062.1| hypothetical protein SPV1_04558 [Mariprofundus ferrooxydans PV-1]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 5/137 (3%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I   I  + E+  L+   LA  AG+   + ++ +          PS  ++ K+     
Sbjct: 2   QNIGGTIRSLREQQGLSQRALAEAAGISAAALSQLEAGQT-----SPSVATLEKLADGLG 56

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
             I        +          E P +     G      +   P G +   V +      
Sbjct: 57  IAIAAFFLDSGNPADIEIFDLNERPSVPLGQGGRFVPLTAMHQPAGFEPMLVQLDPGGCF 116

Query: 127 HNGIYAIQTQDTRHKTQ 143
               Y I++       +
Sbjct: 117 DENKYGIKSPHAFVWMR 133


>gi|91790971|ref|YP_551922.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700851|gb|ABE47024.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 107

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+ E I     +  LT   LA +AGL  +   + +    +     PS E +  I      
Sbjct: 4  KLGEKIRSYRTKKGLTLEALAHQAGLSKSYLWELENRESQ----RPSAEKLQGIADVLGV 59

Query: 68 TICQLLDLPFSDGRTTEKKEKEIP 91
           +   +D    + +   + ++   
Sbjct: 60 DVSFFVDDSVDNPQEAHRDKQFFR 83


>gi|85707104|ref|ZP_01038192.1| DNA-binding protein, putative [Roseovarius sp. 217]
 gi|85668390|gb|EAQ23263.1| DNA-binding protein, putative [Roseovarius sp. 217]
          Length = 207

 Score = 42.8 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +    T    A++AGL  ++ +K +   +      P+ +++ K+      
Sbjct: 26 DLGVRVRGLRKARGWTLEQAAKQAGLARSTLSKIENGQM-----SPTYDALKKLAQGLEI 80

Query: 68 TICQLLDLPFS 78
          ++ QL   P  
Sbjct: 81 SVPQLFTPPSR 91


>gi|323486027|ref|ZP_08091358.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum
           WAL-14163]
 gi|323400594|gb|EGA92961.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum
           WAL-14163]
          Length = 143

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 12  AIDRMAERHNLTPSGLARKAGL-DPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  + +++ +T   L    GL + +S +  +    E     PS E++ K+      T+ 
Sbjct: 76  NLAYLRKKYGMTQQELVEIIGLKNKSSISLIENGKYE-----PSIENLEKLADFFGVTMD 130

Query: 71  Q 71
           Q
Sbjct: 131 Q 131



 Score = 40.5 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E +  + E++  T   LA   G++  + +  +       +R P   +I  +      +
Sbjct: 3  LAENLKFLREQNGKTQGELAVLFGIEQKTISSWECG-----SRKPPIGTIVSLAKLYRVS 57

Query: 69 ICQLLDLPFSDGRTTEK 85
          +  L+            
Sbjct: 58 LDDLVLTDMRPPIPVYA 74


>gi|300917853|ref|ZP_07134492.1| helix-turn-helix protein [Escherichia coli MS 115-1]
 gi|300414950|gb|EFJ98260.1| helix-turn-helix protein [Escherichia coli MS 115-1]
          Length = 185

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +  E +  +     L+    A + G   +  ++ +R G        S ++I  
Sbjct: 32 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 86

Query: 61 ILAATNETICQ 71
          +  A +    Q
Sbjct: 87 LANALSVEPWQ 97


>gi|323529073|ref|YP_004231225.1| helix-turn-helix domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323386075|gb|ADX58165.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001]
          Length = 212

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     +T   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 34  RVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGV 88

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++  L     +          +IP L    +         +   G  +    +
Sbjct: 89  SLDSLFAPQKTPEAIAVAGPHDIPTLSGHDAKYLLRVWGPIELAGK-FEWYEL 140


>gi|256025208|ref|ZP_05439073.1| hypothetical protein E4_17688 [Escherichia sp. 4_1_40B]
 gi|301325184|ref|ZP_07218708.1| helix-turn-helix protein [Escherichia coli MS 78-1]
 gi|300847945|gb|EFK75705.1| helix-turn-helix protein [Escherichia coli MS 78-1]
          Length = 185

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +  E +  +     L+    A + G   +  ++ +R G        S ++I  
Sbjct: 32 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 86

Query: 61 ILAATNETICQ 71
          +  A +    Q
Sbjct: 87 LANALSVEPWQ 97


>gi|229068689|ref|ZP_04201987.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185]
 gi|228714436|gb|EEL66313.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|229176551|ref|ZP_04303977.1| Transcriptional regulator [Bacillus cereus MM3]
 gi|228606907|gb|EEK64303.1| Transcriptional regulator [Bacillus cereus MM3]
          Length = 115

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I R+ +  +LT   L+ + GL        +          P  ES+  + +  N +
Sbjct: 5  VGQNIKRLRKSFDLTQEQLSDRTGLSRGQIKNWETD-----RHEPDLESLKVLASFFNTS 59


>gi|220920176|ref|YP_002495477.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219944782|gb|ACL55174.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 193

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 40/136 (29%), Gaps = 6/136 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   +  +     LT   LA++ G+  +  +  +R         P+   + ++ A    
Sbjct: 11  RLAARLRGLRTAQGLTLEALAQRCGVSRSMISLVERAES-----SPTATVLERLSAGLGV 65

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFP-PSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
           ++  L      +  +   +  +      P             F +  +   V +P   + 
Sbjct: 66  SLAALFSPEHREDASPLSRRADQRCWRDPGTGYRRRNLSPPGFSSPLELVEVELPPGSTV 125

Query: 127 HNGIYAIQTQDTRHKT 142
                 +   + +   
Sbjct: 126 AYDSIRVPPLEQQVWV 141


>gi|254418301|ref|ZP_05032025.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3]
 gi|196184478|gb|EDX79454.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3]
          Length = 67

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +    + + + LA   G+   + N  +    +     P    I +I     E+I 
Sbjct: 3  NRLKVLRAERDWSQAHLAELLGVSRQTVNALETGRYD--PSLPLAFKIARIFDQPIESIF 60


>gi|154499014|ref|ZP_02037392.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC
          29799]
 gi|261366721|ref|ZP_05979604.1| transcriptional regulator, AraC family [Subdoligranulum variabile
          DSM 15176]
 gi|332655640|ref|ZP_08421260.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|150271854|gb|EDM99080.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC
          29799]
 gi|282571548|gb|EFB77083.1| transcriptional regulator, AraC family [Subdoligranulum variabile
          DSM 15176]
 gi|332515537|gb|EGJ45171.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 109

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I   I    E+   T   L+   G+ P   +  +R          S E++ ++      
Sbjct: 10 EIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGAS-----GISLEALQRLCRLLGV 64

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLL 93
          +  +++              + I  +
Sbjct: 65 SADRIIFGTDEPEAEALALARRISDI 90


>gi|16767308|ref|NP_462923.1| hypothetical protein STM4042A [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|56415888|ref|YP_152963.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|197364817|ref|YP_002144454.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|207859233|ref|YP_002245884.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|16422606|gb|AAL22882.1| hypothetical protein STM4042A [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|56130145|gb|AAV79651.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|197096294|emb|CAR61895.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|206711036|emb|CAR35406.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|261249159|emb|CBG27020.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267996333|gb|ACY91218.1| hypothetical protein STM14_4861 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301160550|emb|CBW20080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|332990871|gb|AEF09854.1| hypothetical protein STMUK_4027 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I  ++ R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A 
Sbjct: 14 IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVAL 65


>gi|37676450|ref|NP_936846.1| hypothetical protein VVA0790 [Vibrio vulnificus YJ016]
 gi|37676458|ref|NP_936854.1| hypothetical protein VVA0798 [Vibrio vulnificus YJ016]
 gi|37200992|dbj|BAC96816.1| hypothetical protein [Vibrio vulnificus YJ016]
 gi|37201000|dbj|BAC96824.1| hypothetical protein [Vibrio vulnificus YJ016]
          Length = 170

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  M ER  L  S +A   G+   ++ K +    E     P    I K+    + +
Sbjct: 5  LQDVLKEMRERKGLKQSEVADYVGVTAQTYMKWENGKNE-----PKASDIKKLAEILSVS 59

Query: 69 ICQLLD 74
            ++  
Sbjct: 60 ESEICR 65


>gi|152974402|ref|YP_001373919.1| XRE family transcriptional regulator [Bacillus cereus subsp.
          cytotoxis NVH 391-98]
 gi|152023154|gb|ABS20924.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH
          391-98]
          Length = 72

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I+  +  +  R N T S LA K G+   +    ++ 
Sbjct: 3  IYNRVKELRARFNFTQSTLAEKVGVTRQTIAAIEKG 38


>gi|330465773|ref|YP_004403516.1| helix-turn-helix domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328808744|gb|AEB42916.1| helix-turn-helix domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 147

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 3/92 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  A+D        + + ++R+ G+   + N+  R         P  E +          
Sbjct: 16  VRRALDEARATRAWSGTEVSRRTGVSRQTINRWVRG---DWASDPEAERVVAFCEGLGLD 72

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                     D  +   +    P    P   +
Sbjct: 73  PTPAFAALGWDRTSARHRSTSTPPPMDPDVEA 104


>gi|324992011|gb|EGC23933.1| helix-turn-helix domain protein [Streptococcus sanguinis SK405]
          Length = 361

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 57/176 (32%), Gaps = 17/176 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            + ++ + E +N+T    A + G+   + +K             S E+  K+   +  ++
Sbjct: 17  GQYVEELIEDYNVTQKEFAERLGVSAKTVSKLVNAEE-----SISKETAHKLAKLSGVSM 71

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              L+L  +      +  ++  L            D   F      +   VP+ R     
Sbjct: 72  QTWLNLQNAYDVKVAEIAEQRDLEEGSEKKICEMIDFKYFK-----DEGYVPDKR----- 121

Query: 130 IYAIQTQDTRHK-TQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
            Y+++ +    +     + L      + L+     +      ++      ++ +K 
Sbjct: 122 -YSLKEKIIELRKILGVANLKNLTTFNHLVSYRNTREFTTKSIVNSNIMLELASKK 176


>gi|313674149|ref|YP_004052145.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312940847|gb|ADR20037.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 214

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           E I ++     LT S LA    +     +  +    E     P  E+I K      
Sbjct: 5  GENIKKIRSVRGLTQSQLADIIDVSRGVISSYEEGRAE-----PKIETIIKTAEVFQ 56


>gi|312962889|ref|ZP_07777376.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
 gi|311282916|gb|EFQ61510.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
          Length = 81

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 15/33 (45%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
          I  + +   L+ + LA++ G+   + +  +   
Sbjct: 8  IKNLRKAAGLSQAQLAQRHGMSRATISGIENNT 40


>gi|302561872|ref|ZP_07314214.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302479490|gb|EFL42583.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 200

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 19/149 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  ++ KI  A  
Sbjct: 19  QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTN-----PSIGTVVKIGDALG 73

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKW 115
            ++  LLD            ++ + L +              +             G   
Sbjct: 74  VSVTTLLDYERGPKVRIVPADQAVRLWHTAEGSYNRLLAGAEAPGPLEMWDWKLMPGESS 133

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
           ++   P        + A +          
Sbjct: 134 DSDPHPAGTVELLHVTAGE---LTLTVDG 159


>gi|269966326|ref|ZP_06180413.1| hypothetical protein VMC_18430 [Vibrio alginolyticus 40B]
 gi|269829065|gb|EEZ83312.1| hypothetical protein VMC_18430 [Vibrio alginolyticus 40B]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + + +  A+ +  +   LT   L+ K G+  ++F   KR                +
Sbjct: 1   MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            +  T + + +L +    +      + ++     FP     
Sbjct: 58  AVDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98


>gi|229151508|ref|ZP_04279711.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550]
 gi|228632051|gb|EEK88677.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+       +   K         F            
Sbjct: 56  YFNISIDELISYTPQMEQEDIKDLYHRLAEAFSEEPFDEVMIEC 99


>gi|156936786|ref|YP_001436137.1| DNA polymerase V subunit [Vibrio harveyi ATCC BAA-1116]
 gi|156530033|gb|ABU75117.1| hypothetical protein VIBHAR_p08270 [Vibrio harveyi ATCC BAA-1116]
          Length = 135

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 11/123 (8%)

Query: 104 FDSGVFPTGNKWNTVGVPE------IRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDI 156
            +               P              +    +     +    SM  +    GDI
Sbjct: 1   MNVIPISARAGITGFESPAAEYRQLSLDLDELLIEHPSATFLGRASGDSMQGVGIFDGDI 60

Query: 157 LILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIA 216
           LI++  + +N  D ++     G+ V K++  +      L+S +  +    V+  DI  + 
Sbjct: 61  LIVDRHVTLNNMDVIV-ANLNGEFVCKLIDIK---HRQLLSAHPNHVPVLVQDCDIFTVE 116

Query: 217 RIL 219
            ++
Sbjct: 117 GVV 119


>gi|94967298|ref|YP_589346.1| XRE family transcriptional regulator [Candidatus Koribacter
          versatilis Ellin345]
 gi|94549348|gb|ABF39272.1| transcriptional regulator, XRE family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I     +  ++   + ++ GL     ++ +          PS +++ KI +A + 
Sbjct: 2  NIGETIRNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTI-----PSLDTLAKIASAMDV 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYF 95
           +        +D  T    +    +L F
Sbjct: 57 ALATFFSDAPADNGTKSSPQVSDEVLRF 84


>gi|91223964|ref|ZP_01259228.1| hypothetical protein V12G01_19507 [Vibrio alginolyticus 12G01]
 gi|91191456|gb|EAS77721.1| hypothetical protein V12G01_19507 [Vibrio alginolyticus 12G01]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + + +  A+ +  +   LT   L+ K G+  ++F   KR                +
Sbjct: 1   MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            +  T + + +L +    +      + ++     FP     
Sbjct: 58  AVDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98


>gi|254228393|ref|ZP_04921820.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262394482|ref|YP_003286336.1| hypothetical protein VEA_003711 [Vibrio sp. Ex25]
 gi|151939199|gb|EDN58030.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262338076|gb|ACY51871.1| hypothetical protein VEA_003711 [Vibrio sp. Ex25]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + + +  A+ +  +   LT   L+ K G+  ++F   KR                +
Sbjct: 1   MRDLTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            +  T + + +L +    +      + ++     FP     
Sbjct: 58  AVDCTLDELQKLANQLQGEDEDYFSRTQDEVFFQFPHLYDF 98


>gi|95930238|ref|ZP_01312976.1| transcriptional regulator, XRE family with cupin sensor
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133701|gb|EAT15362.1| transcriptional regulator, XRE family with cupin sensor
           [Desulfuromonas acetoxidans DSM 684]
          Length = 191

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 47/155 (30%), Gaps = 7/155 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + I + + +M   +++T  GLA K+ +     ++ +R         PS E + K+  A  
Sbjct: 4   ELIGKKLKKMRLNNDMTIEGLANKSQVSSNMISRIERGLTT-----PSVEILMKLAGAFG 58

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF-PTGNKWNTVGVPEIRS 125
            +I   ++                  ++F          +      G       + E  +
Sbjct: 59  MSISYFVEEAEKGSTVVHTPNGSGEPIFFFEDKHQIVSLTQGLRDPGFTVFYDTLEEGCN 118

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILN 160
              G      ++     +      +      L+ +
Sbjct: 119 SGEGDMVHVGEEFAMVLKGQMEF-IIEGKSYLLSD 152


>gi|325687047|gb|EGD29070.1| DNA-binding protein [Streptococcus sanguinis SK72]
          Length = 197

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++ + I    +  NL+   LA    +   S +  +R          +   + K+  
Sbjct: 2  QVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGAT--YPDVQNLLLLSKVFE 55


>gi|291541151|emb|CBL14262.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4]
          Length = 179

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/176 (9%), Positives = 46/176 (26%), Gaps = 23/176 (13%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + + H+L+        G+   + +  +        + PS +++ +I    + +I  
Sbjct: 18  NLKELRQEHSLSQKDFGASIGISAMAISSYESGT-----KSPSIDTVCRIAETYHVSIDW 72

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
           L         + E K     +                         + + +         
Sbjct: 73  LCGTGDIKNHSLEIKTYTDLIEILMLLD---------------EIHIDIEKAERSFGSTL 117

Query: 132 AIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLIS 187
            +          D +++  Y +   +          GD+L       + V K    
Sbjct: 118 GLSPYYLSLTFNDKTLVDFYDEWKEISSIRYKTP-TGDKLYNIWL--EDVHKRYNY 170


>gi|254559382|ref|YP_003066477.1| XRE family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254266660|emb|CAX22437.1| putative transcriptional regulator, XRE family [Methylobacterium
           extorquens DM4]
          Length = 158

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 2/95 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  + +   LT + L +  G+      K +           S   I ++L     +
Sbjct: 42  VGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLS--DIARVLEVRVSS 99

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
                +    D        +    +    + S   
Sbjct: 100 FYDGDEGEGEDRAEVFGFLRTHGAIDLLRAFSEIE 134


>gi|242237765|ref|YP_002985946.1| XRE family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242129822|gb|ACS84124.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703]
          Length = 144

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          ++ + I  + +   LT   LA+   +   +    +     
Sbjct: 28 ELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRR 67


>gi|221200835|ref|ZP_03573876.1| putative transposase [Burkholderia multivorans CGD2M]
 gi|221207031|ref|ZP_03580042.1| putative transposase [Burkholderia multivorans CGD2]
 gi|221213047|ref|ZP_03586023.1| putative transposase [Burkholderia multivorans CGD1]
 gi|221213695|ref|ZP_03586669.1| putative transposase [Burkholderia multivorans CGD1]
 gi|221166484|gb|EED98956.1| putative transposase [Burkholderia multivorans CGD1]
 gi|221167260|gb|EED99730.1| putative transposase [Burkholderia multivorans CGD1]
 gi|221173105|gb|EEE05541.1| putative transposase [Burkholderia multivorans CGD2]
 gi|221179407|gb|EEE11813.1| putative transposase [Burkholderia multivorans CGD2M]
          Length = 344

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 2  TSFSHKKIWEAIDRMAER-HNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
             + ++  E I  +A + H +    +AR+ G+   +  +  R      +  P      K
Sbjct: 4  KMLTQEQSLE-IRVLARQGHGI--KAIARELGVSRNTVRRYLRGEATPPSYGPRAARPRK 60

Query: 61 ILAATNETICQLLDLPFSDGRTT 83
          +   T     ++          T
Sbjct: 61 LDPYTQYLRDRIEAAHPHWIPAT 83


>gi|295838058|ref|ZP_06824991.1| DNA-binding protein [Streptomyces sp. SPB74]
 gi|197699989|gb|EDY46922.1| DNA-binding protein [Streptomyces sp. SPB74]
          Length = 400

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
             I R+ +  +LT   LA  AGL  ++  K+++  I     
Sbjct: 16 GTRIKRLRQERHLTQKALADLAGLSYSTVTKTEKALIPLTPH 57


>gi|218437353|ref|YP_002375682.1| transcriptional regulator of molybdate metabolism, XRE family
           [Cyanothece sp. PCC 7424]
 gi|218170081|gb|ACK68814.1| transcriptional regulator of molybdate metabolism, XRE family
           [Cyanothece sp. PCC 7424]
          Length = 377

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/198 (7%), Positives = 40/198 (20%), Gaps = 24/198 (12%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               +++   I ++  R  L+   LA+ AG+   + +  +          PS     ++ 
Sbjct: 1   MKQDRELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQY-----APSATVALRLA 55

Query: 63  AATNETICQ-LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP----------- 110
            A    +                          F  + +        +P           
Sbjct: 56  KALGCRVEDLFWLDNDETMIEAFPTSTVPIAQPFRLTLAQVGSKLIAYPLIKDDAFRTEI 115

Query: 111 -TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
              +        +           +  +        +  P+      +       +    
Sbjct: 116 IAADGEGWRDTEDSTIKVKLWREPEVLNHTVVIAGCT--PVLSLWANVAQRWYPDLR--- 170

Query: 170 RLLIKPRTGDIVAKVLIS 187
            +             L  
Sbjct: 171 -VYWSFANSMDALHRLAR 187


>gi|182419511|ref|ZP_02950762.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237666225|ref|ZP_04526212.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182376641|gb|EDT74214.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237658315|gb|EEP55868.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 73

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          AI     + ++T   LA + G+   + N  ++       +
Sbjct: 6  AIKVARAQLDMTQKELAERVGVSRQTMNAIEKGEYNPTIK 45


>gi|206974503|ref|ZP_03235419.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|206747146|gb|EDZ58537.1| DNA-binding protein [Bacillus cereus H3081.97]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+       +   K         F            
Sbjct: 56  YFNISIDELISYKPQMEQEDIKDLYHRLAEAFSEEPFDEVMMEC 99


>gi|183221596|ref|YP_001839592.1| putative transcriptional regulator [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
 gi|189911676|ref|YP_001963231.1| hypothetical protein LBF_2156 [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167776352|gb|ABZ94653.1| Hypothetical protein LBF_2156 [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167780018|gb|ABZ98316.1| Putative transcriptional regulator [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
          Length = 93

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          +  + E+  L+ S LA+KA +     +K +    
Sbjct: 34 LQSLREKKGLSQSDLAKKAHVTQQQLSKIENGIN 67


>gi|120435259|ref|YP_860945.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
 gi|117577409|emb|CAL65878.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
          Length = 95

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I  A+  + +   +T   LA    +   + ++ +         +P  ++I KI  A   
Sbjct: 2  EIGSAVKILRKSRGMTQKELADLCDISVNALSQIEINSS-----FPQKQTIHKICKALEY 56

Query: 68 T 68
           
Sbjct: 57 P 57


>gi|145593424|ref|YP_001157721.1| helix-turn-helix domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145302761|gb|ABP53343.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
          Length = 147

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 3/92 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  A+D        + + ++R+ G+   + N+  R         P  E +          
Sbjct: 16  VRRALDEARATRAWSGTEVSRRTGVSRQTINRWVRG---DWASDPEAERVVAFCEGLGLD 72

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                     D +    +    P    P   +
Sbjct: 73  RATAFTALGWDRQNAAHRAGATPPPMDPDVQA 104


>gi|20808446|ref|NP_623617.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517063|gb|AAM25221.1| predicted Transcriptional regulator [Thermoanaerobacter
          tengcongensis MB4]
          Length = 127

 Score = 42.8 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    +++I   +  +  +   T    AR  G+      + ++   +      ST+ + +
Sbjct: 1  MKEEVYREIGRRLWELRRQRGFTREQAARYLGISQKQLARYEKGREK-----ISTDVLER 55

Query: 61 ILAATNETICQLLDLPF 77
          +          LLD   
Sbjct: 56 LAGLYGCDYKYLLDDNE 72


>gi|328947690|ref|YP_004365027.1| hypothetical protein Tresu_0801 [Treponema succinifaciens DSM
          2489]
 gi|328448014|gb|AEB13730.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 109

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K++ E + R+ +  NLT   LA KA L   +    +         W S +++ KI  A 
Sbjct: 7  QKRLGENVKRIRKEQNLTQFQLAEKAELSEETVKNIELSRC-----WTSDKNLAKITKAL 61

Query: 66 N 66
           
Sbjct: 62 G 62


>gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family
          protein [Phascolarctobacterium sp. YIT 12067]
 gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family
          protein [Phascolarctobacterium sp. YIT 12067]
          Length = 104

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT   ++ I + +        ++ + LA++ G+  T  +  +          P+   + +
Sbjct: 5  MTEEYNRLIGKRVKMQRISAKVSQTELAKELGVTQTHLSNIENGRAGLTI--PNLIKLHQ 62

Query: 61 ILAATNETICQLLDLP 76
          IL     +    ++  
Sbjct: 63 ILECPISSFFVDIEWE 78


>gi|302520864|ref|ZP_07273206.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302429759|gb|EFL01575.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 402

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 1/130 (0%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S   I + I  + E  ++T   LA +A +   +  K ++   +   R  +  ++ + L
Sbjct: 1   MNSTASIGDRIRALRELRDITQEQLAARAEVSVDTVRKLEQNTRQ-SARITTLRALARAL 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               E +     +                +          F      P    ++      
Sbjct: 60  DVQLERLVGQPTVSPQLSEDGGLLALRDSVQALDALPGVSFDADEDAPAERAFSDAVATA 119

Query: 123 IRSPHNGIYA 132
             +   G YA
Sbjct: 120 TLAYWKGEYA 129


>gi|288904901|ref|YP_003430123.1| transcriptional regulator, Cro/CI family [Streptococcus
          gallolyticus UCN34]
 gi|288731627|emb|CBI13182.1| putative transcriptional regulator, Cro/CI family [Streptococcus
          gallolyticus UCN34]
          Length = 71

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +   +  +  R  L  + LA+ A +   + +  +R         PS     +I    N
Sbjct: 3  LKNRLKELRARDGLNQTQLAKLAKVSRQTISLLERNEYT-----PSVIIALRIAHIFN 55


>gi|259506409|ref|ZP_05749311.1| transcription regulator [Corynebacterium efficiens YS-314]
 gi|259166002|gb|EEW50556.1| transcription regulator [Corynebacterium efficiens YS-314]
          Length = 110

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 1  MTS-FSHKKIW---------EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          M+   SH + W           I+    R  LT + LA + G++P + +  +R G  
Sbjct: 1  MSMPTSHPRNWGVRPRFLNPHRIELARRRRGLTKTDLAVRLGVNPRTVSGYERSGAP 57


>gi|258507385|ref|YP_003170136.1| hypothetical protein LGG_00390 [Lactobacillus rhamnosus GG]
 gi|257147312|emb|CAR86285.1| Conserved protein [Lactobacillus rhamnosus GG]
 gi|259648741|dbj|BAI40903.1| hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 95

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 11/72 (15%)

Query: 1  MTSFSHKKIWEAIDRMAE------RHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          M +    +    ID +A+      R  ++   LA+K G+      K +R         PS
Sbjct: 20 MDAVMPPQELNIIDALAKLHSERIRRGISQRELAKKIGMTQPQLAKIERLDSV-----PS 74

Query: 55 TESIFKILAATN 66
            ++ +  A   
Sbjct: 75 FNTLNRYAAGLG 86


>gi|238919919|ref|YP_002933434.1| hypothetical protein NT01EI_2023 [Edwardsiella ictaluri 93-146]
 gi|238869488|gb|ACR69199.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 102

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 15 RMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   LT + +A + G   T+  + +     G++  PS  ++ K   AT 
Sbjct: 44 AARKNAGLTQAQVAERMGTKATAITRMESNLASGQS-GPSFATLKKFAHATG 94


>gi|237743275|ref|ZP_04573756.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|256028631|ref|ZP_05442465.1| MerR family transcriptional regulator [Fusobacterium sp. D11]
 gi|289766549|ref|ZP_06525927.1| transcriptional regulator [Fusobacterium sp. D11]
 gi|229433054|gb|EEO43266.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|289718104|gb|EFD82116.1| transcriptional regulator [Fusobacterium sp. D11]
          Length = 184

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 48/191 (25%), Gaps = 36/191 (18%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + + +      ++   LA K  L  +  ++ ++         PS E++ KI       
Sbjct: 3   IGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKA-----SPSIENLKKIAHTL--- 54

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                D+  +     E  +          S             G          I   +N
Sbjct: 55  -----DVRVAYLLEDEDDDIRNIEYIKKDSIKYIESLDSNIKMG----------ILLSNN 99

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA--KVLI 186
               ++           S    Y  G              + + I     ++    K   
Sbjct: 100 REKNMEPIIYEIGIDGESGRDFYSHGS-----------SEEFIYILEGELEVYVANKKYK 148

Query: 187 SRRGRSIDLMS 197
             +G S+   S
Sbjct: 149 LSKGDSLYFKS 159


>gi|224540522|ref|ZP_03681061.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224517863|gb|EEF86968.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 105

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I EAI +  E  NLT   L    G+     +K +    
Sbjct: 37 IGEAIKQAREARNLTQEQLGELMGVKRAQISKIESGKS 74


>gi|188579020|ref|YP_001915949.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523472|gb|ACD61417.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 62

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            + E    +   L  + G+   + N  +    +     PS    F+I     E+I  + 
Sbjct: 2  RELREASGWSQGELGERLGVSRQTINALETGKYD-----PSLPLAFRIARLFGESIEHVF 56

Query: 74 DLPF 77
              
Sbjct: 57 LYED 60


>gi|160893069|ref|ZP_02073857.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50]
 gi|156865152|gb|EDO58583.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50]
          Length = 222

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/161 (8%), Positives = 36/161 (22%), Gaps = 10/161 (6%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG---------RNRW 52
                  I   I    +R   T   LA K  +   + +K +               +   
Sbjct: 12  ADMDQISIGRFIAAERKRKGCTQKQLAEKLNISDKTVSKWECGKGFPEVSLLLPLCKELD 71

Query: 53  PSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG 112
            +   +      + E   +  +    +     ++ K+  +               +    
Sbjct: 72  ITVNELLSGARVSEEEYQKKAEENMVNMIKEREENKKKLIPTIITGLIATISFITLIMVV 131

Query: 113 NKW-NTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYR 152
             +   + VP           I         +    +  Y+
Sbjct: 132 AVYTEVIAVPVKILLVVIACVIFGCGLMVAMEGERTIGYYK 172


>gi|149277999|ref|ZP_01884138.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39]
 gi|149231197|gb|EDM36577.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39]
          Length = 108

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 6/73 (8%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I ++ +++  +   +A++  +   +F+K +    +      +   + +I      +
Sbjct: 4  IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITD-----INISRLEQIAHLFQVS 58

Query: 69 ICQLLDLPFSDGR 81
             ++     + +
Sbjct: 59 TMDIISKEGENPQ 71


>gi|118462695|ref|YP_881469.1| prophage regulatory ptotein [Mycobacterium avium 104]
 gi|118163982|gb|ABK64879.1| putative prophage regulatory ptotein [Mycobacterium avium 104]
          Length = 194

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 5/72 (6%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +++   I R  +   L  + L    GL+  +  K +        R         I     
Sbjct: 5  QEVGANIRRFRQARGLPQAALGEPLGLNQQAIAKIENGT-----RAVKLAEAAVIARTLG 59

Query: 67 ETICQLLDLPFS 78
            +  +   P  
Sbjct: 60 VELDDIAAGPER 71


>gi|104780997|ref|YP_607495.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila
          L48]
 gi|95109984|emb|CAK14689.1| putative transcriptional regulator, Cro/CI family [Pseudomonas
          entomophila L48]
          Length = 104

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           +   +  A+ R  +  +LT + L  + G DP + ++ +          PS E++     
Sbjct: 1  MTRTGLGPALRRYRKLASLTQAQLGERTGFDPKTISRFETGTYT-----PSIEALMNFAE 55

Query: 64 ATN 66
          A  
Sbjct: 56 ALG 58


>gi|94969065|ref|YP_591113.1| XRE family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551115|gb|ABF41039.1| transcriptional regulator, XRE family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 248

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  + ++     S LAR+ G+     +  +        R  + E + K      E     
Sbjct: 26  LKTIRKKQGWNQSELARRLGVSQPLVSLLESGE-----RVLTPEHLQKFRQMGFELDAGY 80

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           L +      +     +E+  L +P        +  + P 
Sbjct: 81  LPMRQDFETSKLNYARELANLDYPRFAHLKVGEPTLHPM 119


>gi|108801860|ref|YP_642057.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119871013|ref|YP_940965.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437828|ref|YP_001073519.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108772279|gb|ABG11001.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119697102|gb|ABL94175.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|126237628|gb|ABO01029.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
          Length = 219

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I   + ++ ++H LT + +A + G+     +K +           +   + K     
Sbjct: 36 IGRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSLSTLAL--LAKGFDVP 90


>gi|78059661|ref|YP_366236.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77964211|gb|ABB05592.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT FS+     A+    +R  L+ + +A++ G+      K +R         PSTE I +
Sbjct: 1  MTPFSN-----ALVYYRKRAGLSQTNVAKQLGVAIQYLWKLERAIKPP----PSTEQIER 51

Query: 61 ILAATNETICQ 71
          I A    T   
Sbjct: 52 IAAVLGMTEAD 62


>gi|73748040|ref|YP_307279.1| hypothetical protein cbdb_B6 [Dehalococcoides sp. CBDB1]
 gi|73659756|emb|CAI82363.1| hypothetical protein, containing a helix-turn-helix motif
          [Dehalococcoides sp. CBDB1]
          Length = 123

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S     +   +  + +   L+   + RK+G+     ++ +     G+ + PS  +++K
Sbjct: 1  MRSEEKTNVGVYLRSLRDTKGLSLREVERKSGVSNAVLSQIE----SGQVKRPSPTTLYK 56

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          +         +L+        +    E +   + F
Sbjct: 57 LAELYGVPYDELMSRAGYPVPSRHVNETQTAQVVF 91


>gi|312899715|ref|ZP_07759038.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|311293147|gb|EFQ71703.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
          Length = 167

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 21/41 (51%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43
            +++KI + I    +   ++ S +AR+  +  ++ ++ + 
Sbjct: 1  MNNNEKIRDIIVARRKELGISLSEMARRLNIPKSTLSRYEN 41


>gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685111|gb|ADK28033.1| HTH_3-family transcription regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205396|gb|ADL09738.1| Putative transcription regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302329950|gb|ADL20144.1| Putative transcription regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275634|gb|ADO25533.1| Putative transcription regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 475

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 27/132 (20%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++ +   L+ + LA    L  +  N+ +        R  +   + +I       
Sbjct: 6   VGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDV-----RPLTLPVLHRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
                    S              L           D            V +        
Sbjct: 61  ATFFSKDDASRLLAEVHDVMLDKELCPEDIDLQELSDLVDHHPDIARAVVEMHRRYRNVR 120

Query: 129 GIYAIQTQDTRH 140
              +  T     
Sbjct: 121 DKLSAATDARLV 132


>gi|300710183|ref|YP_003735997.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3]
 gi|299123866|gb|ADJ14205.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3]
          Length = 71

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +     RH LT S LA    +   + +  +          PS E  F +    + +I  +
Sbjct: 5  LKVRRARHELTQSDLAEAVDVSRQTISAIEAGRYN-----PSLELAFHLAEYFDCSIEDI 59

Query: 73 LDLP 76
           + P
Sbjct: 60 FEPP 63


>gi|291541918|emb|CBL15028.1| looped-hinge helix DNA binding domain, AbrB family [Ruminococcus
          bromii L2-63]
          Length = 136

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 5/38 (13%), Positives = 14/38 (36%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I   +  + +++  +   LA +  +   S  K +    
Sbjct: 2  IGMNLKYLRKKYGYSQEDLAERLEVSRQSVAKWENEES 39


>gi|284030897|ref|YP_003380828.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283810190|gb|ADB32029.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836]
          Length = 830

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + R      L+  GLA  AGL   +    +R    GR R P   ++  +  A        
Sbjct: 22  LRRHRRDAGLSQEGLAELAGLSVDAIAALER----GRRRAPRPHTLRLLGDALRLGAPDR 77

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
             L  +  R  +     +     P +   G  D 
Sbjct: 78  AQLTAAARRDGDPSRSTLRPPPVPANRLIGRGDE 111


>gi|257868206|ref|ZP_05647859.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257874521|ref|ZP_05654174.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257802320|gb|EEV31192.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257808685|gb|EEV37507.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 166

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       +   +    E++ LT S LA    +   + +K +         +PS +++ K
Sbjct: 1  MVGMKETILAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGAT-----YPSKKNMIK 55

Query: 61 ILAATNET 68
          I    + +
Sbjct: 56 IAEELDIS 63


>gi|253580990|ref|ZP_04858251.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847653|gb|EES75622.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 66

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 1  MTSFS-HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK 42
          M   +  KK+   +    ER  L+ S LA +AG+   + +  +
Sbjct: 1  MRMDTVKKKLGYTVRSERERLGLSQSSLAERAGVSTRTISDIE 43


>gi|251782567|ref|YP_002996869.1| putative phage DNA-binding protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391196|dbj|BAH81655.1| putative phage DNA-binding protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 116

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           +E I  +A+   +T   L  K GL   S    K        + PS E +  I    N + 
Sbjct: 5   FERIKELAKSRGITLGSLEEKLGLSRNSIYTIKN-------KKPSAERLQLIADYFNVST 57

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
             LL    +         ++        + S  +
Sbjct: 58  DYLLGRTDNPAIANGTTGQKTIDFKEIAAQSMSY 91


>gi|229825967|ref|ZP_04452036.1| hypothetical protein GCWU000182_01331 [Abiotrophia defectiva ATCC
          49176]
 gi|229789709|gb|EEP25823.1| hypothetical protein GCWU000182_01331 [Abiotrophia defectiva ATCC
          49176]
          Length = 288

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I E I R+ E +N+T + LA   G+ P S  K +   +      P  E I K+  A N 
Sbjct: 2  DIAERIKRLRELYNITANELAEITGIHPVSIRKYETNKMV-----PGIEVIDKMCNALNL 56

Query: 68 TIC 70
          +  
Sbjct: 57 SRM 59


>gi|291298169|ref|YP_003509447.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290567389|gb|ADD40354.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 806

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 7/88 (7%)

Query: 1  MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M   + K       +     +  L+   LA+KA L P +  + +    +     P   ++
Sbjct: 1  MPPETEKTGTCGRLLRAHRLQAGLSQERLAQKAALSPRTIRQIESGRSQ-----PRASTL 55

Query: 59 FKILAATNETICQLLDLPFSDGRTTEKK 86
            +  A   +      L  +    ++  
Sbjct: 56 KLLAEALGLSEADWTALLETALPDSQPS 83


>gi|297560527|ref|YP_003679501.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844975|gb|ADH66995.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 202

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             +   +  + ++   T + L+   G+  ++ ++ +       +R P+ E +F +  A  
Sbjct: 10  DAVGPRLRALRKQKETTLTDLSAATGISVSTLSRLESG-----SRRPTLELLFPLARAYG 64

Query: 67  ETICQLLDLPFSDGRTTE-KKEKEIPLLYFPPSGSGGFFDSGVFPT-GNKWNTVGVPEIR 124
            T+ +L+D P +       +      +   P +   G   +      G    +   P+  
Sbjct: 65  VTLDELVDAPPTGDPRIHLRPVNRHGMTMLPLTRRPGGIQAYKLVIPGRDRPSRPDPQTH 124

Query: 125 SPHNGIYAIQTQDTRH 140
             +  +Y +  +    
Sbjct: 125 EGYEWLYVLNGRLRVV 140


>gi|257065740|ref|YP_003151996.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256797620|gb|ACV28275.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 129

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  + E   LT   LA+   +   + ++ +    + R R  + + + K L  T+
Sbjct: 7  VKELREIKKLTQEDLAKLCNVSTKTISRYELGESKPRYRK-TYDLLAKHLDTTH 59


>gi|94967186|ref|YP_589234.1| XRE family transcriptional regulator [Candidatus Koribacter
          versatilis Ellin345]
 gi|94549236|gb|ABF39160.1| transcriptional regulator, XRE family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 83

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 19/46 (41%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
           + K++   + +  +   LT + LA +  +   + +  +    E R
Sbjct: 6  RTSKQLGALLRKTRKSLGLTQADLASRIDVRQATISDLEHGEREAR 51


>gi|306820407|ref|ZP_07454044.1| XRE family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304551570|gb|EFM39524.1| XRE family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 69

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 3/43 (6%), Positives = 14/43 (32%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          +   +  + +    + + LA   G+   + +  +        +
Sbjct: 7  LKNNLKEIRKEKGYSQTDLAELVGVSRNTISSIETGQFNPTAK 49


>gi|289769604|ref|ZP_06528982.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289699803|gb|EFD67232.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 323

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 2/97 (2%)

Query: 14  DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73
            R+ E   LT   LA + G+ P +    +      R R    E+  K+L    E      
Sbjct: 117 RRLRESAALTQPQLATQVGVAPGTVRAWESGRTTPRGR--KREAYAKLLKTLAEEEAAQA 174

Query: 74  DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                +     + E +      P          G   
Sbjct: 175 QAQAPEQEPKPEAEPQPQPELEPQPQPQPVAAPGPTA 211


>gi|251782746|ref|YP_002997049.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|242391376|dbj|BAH81835.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
          Length = 257

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E + ++ +   ++   LA + G    + +K +         +P  E + ++      +
Sbjct: 4  GEKLFKLRKEKGISQENLAEQIGTTRQAISKWENNQG-----FPEVEKLLQLSNVFEVS 57


>gi|242241616|ref|ZP_04796061.1| signal peptidase I [Staphylococcus epidermidis W23144]
 gi|242234932|gb|EES37243.1| signal peptidase I [Staphylococcus epidermidis W23144]
          Length = 192

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNC----GDRLLIKPRTGDIVAKVLISRRGRSIDLM 196
                SM P +   D +I++   +       GD ++      +   K L+ + G  I+  
Sbjct: 31  TVSGLSMYPTFNNKDKVIVSKISKSLNHLDSGDVIVFHKNKKNNFIKRLVGKPGDQIEYK 90

Query: 197 SL----NCCY 202
           +     N  Y
Sbjct: 91  NDKLYINKHY 100


>gi|238821343|ref|YP_002925159.1| hypothetical protein PH10_gp26 [Streptococcus phage PH10]
 gi|238804925|emb|CAY56519.1| hypothetical protein [Streptococcus phage PH10]
          Length = 112

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            +  + E   L+   +AR  G+   + +  +R G      +PS + I  I    +     
Sbjct: 4   RLKELREDLGLSVKDMARDTGVSQNTIHLYERGG------YPSIKQIEMIAKTYDVNPAW 57

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           L+     + +   +  ++I     P +    +F++  
Sbjct: 58  LVGWVDDEIQPVIQVVEKIIYKESPTARLPDYFNNNN 94


>gi|228919863|ref|ZP_04083219.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228839764|gb|EEM85049.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|228995761|ref|ZP_04155422.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17]
 gi|229003381|ref|ZP_04161205.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4]
 gi|228757871|gb|EEM07092.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4]
 gi|228764005|gb|EEM12891.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17]
          Length = 73

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           K +   I  +   +N++   LA K  +   + N  +    +     PS    F++    
Sbjct: 7  RKDVKNQIYALRTENNISQGALADKCKVSRQTINAIENNKYD-----PSLALAFRLAEVL 61

Query: 66 NET 68
            T
Sbjct: 62 GTT 64


>gi|255279970|ref|ZP_05344525.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
 gi|255269743|gb|EET62948.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
          Length = 257

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     ++    + +  ++  LT   LA+K  +   + +K +R         P    +  
Sbjct: 1  MDETGKEQFGRFVAQQRKKKKLTQKELAQKLYVSDKAVSKWERGSS-----MPDIALLTP 55

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYF 95
          +  A   T+ +LL+    +     +   +  L   
Sbjct: 56 LAEALGVTVTELLEGKEMEKTEESRMADDSHLEML 90


>gi|190572214|ref|YP_001970059.1| putative HTH-type transcriptional regulator HipB
          [Stenotrophomonas maltophilia K279a]
 gi|190010136|emb|CAQ43744.1| putative HTH-type transcriptional regulator HipB
          [Stenotrophomonas maltophilia K279a]
          Length = 85

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          T  + +++   +     +  L+ + LA + G+   +    +R          S E + +I
Sbjct: 7  TVRTAQQLAPLMRAFRRQAGLSQAQLAERLGISRQAVGALERD-----PASASFERLMRI 61

Query: 62 LAATN 66
           A   
Sbjct: 62 WAVLG 66


>gi|167840953|ref|ZP_02467637.1| transcriptional regulator, XRE family with cupin sensor domain
          [Burkholderia thailandensis MSMB43]
          Length = 191

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +  + +R  LT    A  AGL     ++ +R         PS  S+  I  A   T
Sbjct: 15 IGNKMRALRQRLGLTLDEAAAAAGLSKPFLSQVERGRAT-----PSITSLVGIARALGVT 69

Query: 69 ICQL 72
          +   
Sbjct: 70 MQYF 73


>gi|149920828|ref|ZP_01909291.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149818346|gb|EDM77798.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 120

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +    +  +     LT  GLA +A L   +  + +  G       PS  ++ K+      
Sbjct: 15 RFGRHVRGLRRARGLTQEGLAERADLSADTIRRLENGGF-----SPSLVTLVKLTRGLEL 69

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPL 92
           +  L+          E++  ++ +
Sbjct: 70 RLSTLIASYEMWLLPAERELADLLV 94


>gi|153954548|ref|YP_001395313.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347406|gb|EDK33942.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 71

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I+ + +R  L    LA+   +   + +  +          PS E  F I     ++I ++
Sbjct: 5  IEELRKRIGLNQEKLAKALKVSRQTISSIETGKYN-----PSLELAFAISDYFGKSIEEI 59

Query: 73 LDLPFS 78
                
Sbjct: 60 FIHERR 65


>gi|56459168|ref|YP_154449.1| DNA-binding HTH domain-protein [Idiomarina loihiensis L2TR]
 gi|56178178|gb|AAV80900.1| Membrane associated protein containing xre-family DNA-binding HTH
           domain [Idiomarina loihiensis L2TR]
          Length = 136

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 4/121 (3%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I ++ ER N +   LA  +GL   +  + +      +    S +S+  +       + + 
Sbjct: 2   IKKLRERKNWSQEQLAIMSGLSVRTIQRIESGN---KASMESLKSLASVFEVDVSKLTEE 58

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW-NTVGVPEIRSPHNGIY 131
           + +   + +  +++     L  F  +                    +  P+I +      
Sbjct: 59  ITVIDKESKYWKQQPVWFKLSLFGVNRRNKLVWVEYLSVLLGLATWIIHPDIFATSAFFL 118

Query: 132 A 132
           A
Sbjct: 119 A 119


>gi|13541016|ref|NP_110704.1| transcription regulator [Thermoplasma volcanium GSS1]
          Length = 194

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          + +M +   ++   LAR  G+  +   + ++  I      P+   I  I     ++  + 
Sbjct: 10 LRKMRKNLGISQKDLARVTGVSQSYIARLEKGTIN-----PTYSKIKAIYEYLTKSSEKA 64

Query: 73 LDLPFSDGRTTEKKEKEIP 91
            +  +  +   +      
Sbjct: 65 NTIALTCDKIMTRNVVVCR 83


>gi|53718188|ref|YP_107174.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|167814172|ref|ZP_02445852.1| putative DNA-binding protein [Burkholderia pseudomallei 91]
 gi|52208602|emb|CAH34538.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
          Length = 158

 Score = 42.8 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 9/101 (8%)

Query: 1  MTSFSHKKIW----EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
          M    H+ +     E +  + +R  L+   LA +A L  T+    ++    GR       
Sbjct: 1  MPKL-HEAVANGLSERLRTIRKRAGLSQDELAARASLARTNLASVEQ----GRRANLRLS 55

Query: 57 SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          ++ ++       +           +    ++    ++    
Sbjct: 56 TLSRLADVLGVDVLDFFCDRPVGEQEPAGEDAPARVIANVK 96



 Score = 37.8 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++   + R+     L+   L+ KA    T   + +          P    +  +  A   
Sbjct: 90  RVIANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAA-----SPMVVDLQDLADALGI 144

Query: 68  T 68
           +
Sbjct: 145 S 145


>gi|307354843|ref|YP_003895894.1| XRE family transcriptional regulator [Methanoplanus petrolearius
          DSM 11571]
 gi|307158076|gb|ADN37456.1| transcriptional regulator, XRE family [Methanoplanus petrolearius
          DSM 11571]
          Length = 77

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            I  +     +T   LA K  +   +    ++         PS     K+    N  I 
Sbjct: 3  NRIKELRNERGVTQQELAEKVDVSSRTIISLEKGQYN-----PSVLLAHKLAVFFNCAIE 57

Query: 71 QLLDL 75
          ++   
Sbjct: 58 EVFIF 62


>gi|304403726|ref|ZP_07385388.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304346704|gb|EFM12536.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 116

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   I  + +   LT   LA  +    +     +R       R  S E++ KI  A  
Sbjct: 6  ELVGARIREIRKSKGLTQDQLAEISQFHYSYIGGVERGE-----RNVSLENLAKIADALQ 60

Query: 67 ETICQLLDLPFSDGRTTEKKEKEIPLL 93
            +    D         + +  EI  L
Sbjct: 61 VKLSLFFDYEEPKSSAVDSELDEIIYL 87


>gi|303243062|ref|ZP_07329512.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302589397|gb|EFL59195.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 114

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I +   + NLT   LA K  +  +   + +R      +R  S E++ ++    + +
Sbjct: 6  LGERIRKQRLKVNLTQEQLAEKIDMSYSFVGQIERG-----DRVLSLETLVRLANELSIS 60

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
          +  L+                  L
Sbjct: 61 VDYLIQDSLKFTPEVFISSALTNL 84


>gi|238925355|ref|YP_002938872.1| hypothetical protein EUBREC_3010 [Eubacterium rectale ATCC 33656]
 gi|238877031|gb|ACR76738.1| Hypothetical protein EUBREC_3010 [Eubacterium rectale ATCC 33656]
 gi|291527628|emb|CBK93214.1| transcriptional regulator, XRE family [Eubacterium rectale
          M104/1]
          Length = 100

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          I   ID   + +NLT   LA + G+D    +K +        R PS + + ++      
Sbjct: 34 IRAMIDARIK-NNLTQKELAARTGIDQADISKLENGT-----RNPSLKLLKRLAHGMGM 86


>gi|260589105|ref|ZP_05855018.1| putative DNA-binding protein [Blautia hansenii DSM 20583]
 gi|260540525|gb|EEX21094.1| putative DNA-binding protein [Blautia hansenii DSM 20583]
          Length = 45

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          KI + I    +   +T   LA K G+   S +K +    +
Sbjct: 5  KIGKYIAGKRKSLGMTQKQLAEKIGMSDKSVSKWESGVSQ 44


>gi|188590232|ref|YP_001921142.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska
          E43]
 gi|188500513|gb|ACD53649.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska
          E43]
          Length = 134

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          + + I  + +   LT + L R  G+  T+ +  +          P+ E  FKI A  
Sbjct: 4  LADRIKDLRKSKKLTQTDLGRILGVGKTTISMYENGNST-----PNDEIKFKIAAFF 55


>gi|206968183|ref|ZP_03229139.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134]
 gi|229177566|ref|ZP_04304944.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W]
 gi|206737103|gb|EDZ54250.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134]
 gi|228605928|gb|EEK63371.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|167578195|ref|ZP_02371069.1| DNA-binding protein [Burkholderia thailandensis TXDOH]
 gi|167819326|ref|ZP_02451006.1| DNA-binding protein [Burkholderia pseudomallei 91]
 gi|167849172|ref|ZP_02474680.1| DNA-binding protein [Burkholderia pseudomallei B7210]
 gi|167897769|ref|ZP_02485171.1| DNA-binding protein [Burkholderia pseudomallei 7894]
 gi|167906116|ref|ZP_02493321.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177]
 gi|257142894|ref|ZP_05591156.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 69

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          +  +     LT + LA +  +D +  +K +R   
Sbjct: 6  LRALRRAAGLTQTQLAERLSIDQSYLSKIERGER 39


>gi|149183902|ref|ZP_01862291.1| transcriptional regulator [Bacillus sp. SG-1]
 gi|148848385|gb|EDL62646.1| transcriptional regulator [Bacillus sp. SG-1]
          Length = 118

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + E I  + E   +T + LA++A +  +  +  +R       + PS + + KI AA  
Sbjct: 2  VGEKIKSIRENKGITINELAQRADISKSYISTIERDI----QKNPSIKVLEKIAAALE 55


>gi|147678779|ref|YP_001212994.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146274876|dbj|BAF60625.1| hypothetical transcriptional regulator [Pelotomaculum
          thermopropionicum SI]
          Length = 97

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +   I +  +   +T   +A KAGL     ++ +      R   P+  ++ KI  A 
Sbjct: 36 DLIAQIIKTRKEKGMTQKDVADKAGLTQQMVSRIES-----REHLPNYRNLVKIADAL 88


>gi|91790906|ref|YP_551857.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700786|gb|ABE46959.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 167

 Score = 42.8 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S  ++   + R      L+   L + AGL   + N+ +     G+    S     +
Sbjct: 1  MAILS--ELSNVVKRQRSEMGLSQERLGKLAGLSRATINELE----TGKLANLSLTRAER 54

Query: 61 ILAATNET 68
          +       
Sbjct: 55 LANVLGYG 62


>gi|330722090|gb|EGH00006.1| hypothetical protein imdm_235 [gamma proteobacterium IMCC2047]
          Length = 285

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 13/164 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +  +  + NL+   +A K GL  +  +  +R          S  SI K+ A  + +
Sbjct: 105 IGPQLRALRNKKNLSLRDVASKTGLAASLISTLERTSTGA-----SAASIHKLAAFYDTS 159

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIRS 125
           + +L     S     E                         P     +       P   S
Sbjct: 160 VTELSKAQASSAPRQESGVVRADEARVVAMFGPDIRIEQRAPNDAAMDCQKWTLQPGTSS 219

Query: 126 PHNGIYAIQTQDTRHK-----TQDTSMLPLYRKGDILILNSAIQ 164
                +  +      +       D     L   GD +  +S   
Sbjct: 220 EEAYSHEGEEFIYVLRGLLEVVLDGCERQLLYPGDNIYFDSNRP 263


>gi|318057400|ref|ZP_07976123.1| putative DNA-binding protein [Streptomyces sp. SA3_actG]
 gi|318076541|ref|ZP_07983873.1| putative DNA-binding protein [Streptomyces sp. SA3_actF]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 1/130 (0%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S   I + I  + E  ++T   LA +A +   +  K ++   +   R  +  ++ + L
Sbjct: 1   MNSTASIGDRIRALRELRDITQEQLAARAEVSVDTVRKLEQNTRQ-SARITTLRALARAL 59

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
               E +     +                +          F      P    ++      
Sbjct: 60  DVQLERLVGQPTVSPQLSEDGGLLALRDSVQALDALPGVSFDADEDAPAERAFSDAVATA 119

Query: 123 IRSPHNGIYA 132
             +   G YA
Sbjct: 120 TLAYWKGEYA 129


>gi|315648648|ref|ZP_07901744.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
 gi|315275850|gb|EFU39201.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
          Length = 189

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          HKK+   +  + +   L+   +A   G+      + +R         P+   +++I++  
Sbjct: 5  HKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSN-----PTISVLWRIVSGL 59

Query: 66 NETI 69
            + 
Sbjct: 60 GISF 63


>gi|294615610|ref|ZP_06695466.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1636]
 gi|291591553|gb|EFF23206.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1636]
 gi|323481029|gb|ADX80468.1| helix-turn-helix family protein [Enterococcus faecalis 62]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFNQLESFNPD 64


>gi|255316571|ref|ZP_05358154.1| hypothetical protein CdifQCD-7_19592 [Clostridium difficile
           QCD-76w55]
          Length = 227

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/116 (12%), Positives = 35/116 (30%), Gaps = 5/116 (4%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            K   + +    ++ N+T   +A K GL   + +  +  G     R P+  ++ + L   
Sbjct: 38  EKDFIQNLVNFRKKQNITQKEIAEKTGLTQQAISGIETGG-----RKPTLINLIRYLQGI 92

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
              I  L     ++ +  +    +     F    +            +    +   
Sbjct: 93  GININDLFIENRTNLKLEQIGYIDELYYLFLEKFNYVTEVLKDNNIKDSEWDIDFI 148


>gi|226325593|ref|ZP_03801111.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758]
 gi|225205717|gb|EEG88071.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I    +++  +   LA + G+   + +K +  G       P  + I ++      +
Sbjct: 3  LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAV-----PDLQRILQMSELFCVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYF 95
             LL         T ++  E      
Sbjct: 58 TDYLLKDEMKAENITYQESTERYAEPL 84


>gi|172035824|ref|YP_001802325.1| hypothetical protein cce_0908 [Cyanothece sp. ATCC 51142]
 gi|171697278|gb|ACB50259.1| hypothetical protein cce_0908 [Cyanothece sp. ATCC 51142]
          Length = 115

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 20/54 (37%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           + I +  ++   +   LA+K  +D T  +K +    +   +      +   L 
Sbjct: 6  GQVIRQRRKKKGYSQRELAQKLEIDFTYLSKLENDRAKYSPKEDIIRDLAAYLD 59


>gi|170760881|ref|YP_001786959.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169407870|gb|ACA56281.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch
          Maree]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I E I R+ +   +T   LA   G+   + +K +    
Sbjct: 6  IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTS 43


>gi|148379505|ref|YP_001254046.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          3502]
 gi|153932694|ref|YP_001383881.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          19397]
 gi|153935321|ref|YP_001387431.1| putative DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148288989|emb|CAL83077.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|152928738|gb|ABS34238.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          19397]
 gi|152931235|gb|ABS36734.1| putative DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I E I R+ +   +T   LA   G+   + +K +    
Sbjct: 6  IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTS 43


>gi|86360696|ref|YP_472584.1| MerR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284798|gb|ABC93857.1| probable transcriptional regulator protein, MerR family [Rhizobium
           etli CFN 42]
          Length = 190

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 47/177 (26%), Gaps = 22/177 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++  +T + LA   G+     +K +   I      PS  ++  +  A    
Sbjct: 3   IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 57

Query: 69  ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +                         R   +   +  LL    + + G        T   
Sbjct: 58  LTAFFRRYEEPRNAVFVKAGQGVELERRGTRAGHQYNLLGHIDNNTSGVIVEPYLITLTA 117

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            + V           +Y ++ +          +  + + GD L  ++         +
Sbjct: 118 DSDVFPTFQHEGMEFLYMLEGE--VIYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 171


>gi|52142223|ref|YP_084606.1| DNA-binding protein; transcriptional regulator [Bacillus cereus
           E33L]
 gi|51975692|gb|AAU17242.1| DNA-binding protein; possible transcriptional regulator [Bacillus
           cereus E33L]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+       +   K         F            
Sbjct: 56  YFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMEC 99


>gi|23464934|ref|NP_695537.1| hypothetical protein BL0333 [Bifidobacterium longum NCC2705]
 gi|239622527|ref|ZP_04665558.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
 gi|23325529|gb|AAN24173.1| hypothetical protein with helix turn helix motif [Bifidobacterium
          longum NCC2705]
 gi|239514524|gb|EEQ54391.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +  + N+    LA   G+   + +K +         +P  + +  I      T+ 
Sbjct: 5  ANLQYLRAQRNMPQEQLAMLLGVSRQAISKWESEKA-----YPEMDKLLMICDLFGCTLD 59

Query: 71 Q 71
           
Sbjct: 60 D 60


>gi|325521409|gb|EGD00242.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 87

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+     + E +        L+   LA +AG+  T+  + +              ++ +
Sbjct: 1  MTTL--ADVAEMLREARRTAGLSQQELADRAGVARTTLARMETLARS----DMRASALVR 54

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEI 90
          +L A    +  +             +++ +
Sbjct: 55 LLEAAGYDLRTVRRGHGRTLDDILTEQRTM 84


>gi|319796576|ref|YP_004158216.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315599039|gb|ADU40105.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 175

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 9/109 (8%), Positives = 25/109 (22%), Gaps = 15/109 (13%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            ++   +  + ++  LT +      G+      + +             E + K+L+A  
Sbjct: 9   DQLRPHLKALRKKRGLTQAQAGALVGVSQARIAEIE-----ANPGAVGLEHLAKLLSALG 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            +               +      P+                      W
Sbjct: 64  AS----------FYLRDDAPPSSGPVYAMEEGPEYASSQDTDVKVPEGW 102


>gi|307131678|ref|YP_003883694.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937]
 gi|306529207|gb|ADM99137.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937]
          Length = 81

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I +  E   L+   LA   G+D +   + +R       R  +  ++ +I  A   +
Sbjct: 17 LGQTIRQRREFLGLSQENLASATGIDRSHMGRIERGE-----RNVTLLNLLRIADALEWS 71

Query: 69 ICQ 71
          + Q
Sbjct: 72 LEQ 74


>gi|256850687|ref|ZP_05556112.1| rad protein [Lactobacillus crispatus MV-1A-US]
 gi|256712555|gb|EEU27551.1| rad protein [Lactobacillus crispatus MV-1A-US]
          Length = 112

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + E I       + T   LA    +  T+ +  +    E     PS +++ K+    + 
Sbjct: 2  NLAERIKNARINKHYTQKDLAELINVKSTTVSGWELGRNE-----PSIDTLKKLATKLDV 56

Query: 68 TICQ 71
          +   
Sbjct: 57 SFDY 60


>gi|253579866|ref|ZP_04857134.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848865|gb|EES76827.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 73

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          AI     + ++T   LA  AG+   + N  ++       +
Sbjct: 6  AIKVARAQKDMTQKALAEAAGISRQTMNAIEKGEYNPTIK 45


>gi|228911728|ref|ZP_04075501.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL
           200]
 gi|228847886|gb|EEM92767.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL
           200]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 52/190 (27%), Gaps = 14/190 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I + I    +   +T   LA   G+   S +K +         +P    +  + +  N 
Sbjct: 5   QIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNI 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           +I +L+       +   K         F                   ++   +       
Sbjct: 60  SIDELISYTPQMKQEDIKNLYHRLAEAFSEKTFAEVMIECRGIIKKYYSCFPL------L 113

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLI 186
             +  +              + +  +   L      +    D  L+ +  +      +++
Sbjct: 114 LQMGLLFINHHMLTEDTDKRIEILEEAMHLFSRVQEE--SDDVSLVKEAVSFQATCYLIL 171

Query: 187 SRRGRSIDLM 196
           ++    + L+
Sbjct: 172 NKPNEVLQLL 181


>gi|222096786|ref|YP_002530843.1| transcriptional regulator [Bacillus cereus Q1]
 gi|221240844|gb|ACM13554.1| transcriptional regulator [Bacillus cereus Q1]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
                I + I    +   +T   LA   G+   S +K +         +P    +  + +
Sbjct: 1   MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLAS 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
             N +I +L+       +   K         F            
Sbjct: 56  YFNISIDELISYKPQMEQEDIKDLYHRLAEAFSEEPFDEVMMEC 99


>gi|221201483|ref|ZP_03574522.1| repressor protein CI [Burkholderia multivorans CGD2M]
 gi|221207961|ref|ZP_03580967.1| repressor protein CI [Burkholderia multivorans CGD2]
 gi|221172146|gb|EEE04587.1| repressor protein CI [Burkholderia multivorans CGD2]
 gi|221178751|gb|EEE11159.1| repressor protein CI [Burkholderia multivorans CGD2M]
          Length = 132

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 6/62 (9%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +    +   LT   LA K GL   + ++ +    +G  +         I        
Sbjct: 7  GKRLRAARKGARLTQKQLADKVGLKQATISELENDEYDGSAKT------AAIADVLGVNA 60

Query: 70 CQ 71
            
Sbjct: 61 LW 62


>gi|254417612|ref|ZP_05031348.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC
          7420]
 gi|196175582|gb|EDX70610.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC
          7420]
          Length = 91

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT    K+    +  + ER NLT   LAR+  +   ++ + +      R   P  +++ +
Sbjct: 1  MTKKQSKEAESPLKILRERLNLTQEELARQCRIPLRTYVRWETGEATPRPTIPQVKALCR 60

Query: 61 ILAATNETICQLLDLPFSDGRTTEKKEKEIP 91
                 +I  L D       + +   +   
Sbjct: 61 ---ELGVSIEDLPDEFGPMQVSAKDNPRSQS 88


>gi|168179461|ref|ZP_02614125.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC
           2916]
 gi|182669609|gb|EDT81585.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC
           2916]
          Length = 144

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I +  E    +   L ++A +  ++ +        G+ + P+T+++ KI  A   ++ + 
Sbjct: 7   IIKCLENKGWSRYKLCQEANIAQSTLSDIL----SGKAKNPNTKTLQKIADALGVSVNEF 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
            D    D +      +E    Y   S     ++  +      +
Sbjct: 63  FDDSNEDTKKDINIPQEYSDKYKVTSRDKKQYEEEMKKANEAF 105


>gi|168495167|ref|YP_001686905.1| hypothetical protein APCd_gp64 [Azospirillum phage Cd]
 gi|168148926|emb|CAO99390.1| hypothetical protein [Azospirillum phage Cd]
          Length = 125

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +       N T   LAR++GL P    K +    +G+++ P+ E++ KI+ A      
Sbjct: 41  DTLRAARALLNWTREELARRSGLSPQLVQKIE----DGKSKRPAHETVKKIIGAFLSAGV 96

Query: 71  QLLDLPFSDGR 81
           + ++       
Sbjct: 97  EFIEPGEPLPP 107


>gi|160944538|ref|ZP_02091766.1| hypothetical protein FAEPRAM212_02051 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444320|gb|EDP21324.1| hypothetical protein FAEPRAM212_02051 [Faecalibacterium prausnitzii
           M21/2]
          Length = 196

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             +    SM P     DI++L  +  +  G+          ++ K +I + G  I
Sbjct: 58  VLQVSGDSMNPTLNDKDIILLVKSNHIENGELC-GFYWQNKLLLKRIIGQPGDVI 111


>gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC
          29149]
 gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC
          29149]
          Length = 120

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          +   I  + ++  LT + L  + G+   + +K +  
Sbjct: 8  LVNRIAELRKKLGLTQTRLGEEIGVSQQTISKYENG 43


>gi|134298756|ref|YP_001112252.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051456|gb|ABO49427.1| putative transcriptional regulator, XRE family [Desulfotomaculum
          reducens MI-1]
          Length = 106

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I ++ +    + + LA+++GL     ++ +    +     P+ +S+ +I ++   
Sbjct: 5  NISFKITKLRKSVGWSKNKLAKESGLSQAYISQLEAGQKQ-----PTIDSLDRICSSLGL 59

Query: 68 TICQLLDLPFSDGRTTEKKEKEI 90
          T+ +              +    
Sbjct: 60 TLAEFFSEENKPLSPDIAQLVNH 82


>gi|147920208|ref|YP_686025.1| transcription regulator [uncultured methanogenic archaeon RC-I]
 gi|121683053|sp|Q0W4J4|Y1526_UNCMA RecName: Full=Putative HTH-type transcriptional regulatory protein
           UNCMA_15260
 gi|110621421|emb|CAJ36699.1| predicted transcription regulator [uncultured methanogenic archaeon
           RC-I]
          Length = 324

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 14/137 (10%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + E  N++   LA   G+   + +K +           + E+  K+    +  I
Sbjct: 129 GETLRSLREAKNISLGELAMALGVSRRTISKYESGMNA------TIEAALKLEEILDAPI 182

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
              +++     RT +  +     L    +       + +         +G     +    
Sbjct: 183 ACPVNMIVMFERTAKDADPSPNDLRNASALEKEALGTLM--------HIGFEVFHTTKAP 234

Query: 130 IYAIQTQDTRHKTQDTS 146
             A+   D        S
Sbjct: 235 FNALSQDDAAKMITGVS 251


>gi|73748389|ref|YP_307628.1| DNA-binding protein [Dehalococcoides sp. CBDB1]
 gi|147669169|ref|YP_001213987.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|289432437|ref|YP_003462310.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73660105|emb|CAI82712.1| DNA-binding protein [Dehalococcoides sp. CBDB1]
 gi|146270117|gb|ABQ17109.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
 gi|288946157|gb|ADC73854.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 67

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  +  R+NLT S LA   G+   +    ++         PS     K+  A +  
Sbjct: 3  LRTRIKELRARYNLTQSELAETVGVSRQTMLYLEKGKYN-----PSLILAHKVAKALHAD 57

Query: 69 ICQLLDLPF 77
          I  +  L  
Sbjct: 58 IEDVFILRD 66


>gi|310827713|ref|YP_003960070.1| transcriptional regulator [Eubacterium limosum KIST612]
 gi|308739447|gb|ADO37107.1| transcriptional regulator [Eubacterium limosum KIST612]
          Length = 68

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 15/43 (34%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          +   +  + +   L+ S LA   G+   + +  +        +
Sbjct: 7  LKNRLKEIRKEKKLSQSALAELVGVSRNTISSIETGQFNPTAK 49


>gi|295132275|ref|YP_003582951.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87]
 gi|294980290|gb|ADF50755.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87]
          Length = 140

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 8/112 (7%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           T  SH  I   I R+ E   +    LA + G+   S +  ++            E + K+
Sbjct: 11  TKTSH--IGRKISRIRELRGMKQEALAAELGISRQSVSSLEQSE------HIEDEKLEKV 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
                 +   + +             ++     F    +    D  +     
Sbjct: 63  AKVLGVSKEAIENFSEELAINFFNSFQDSSNGTFNNHCTFNPLDKLMESVEE 114


>gi|259502231|ref|ZP_05745133.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169849|gb|EEW54344.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 126

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M  F H+     +  + +   L+   LA +  +   + +K +          P  + I +
Sbjct: 1   MNKFQHQ-----LANLRQAAGLSQEQLADQLHVSRQAVSKWENGST-----LPDIDKIVQ 50

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
           I      ++ +L+         T  + K   L+      S            N W 
Sbjct: 51  IADILQVSLDELVLGK----APTVSQSKLDRLIDAHLQQSQQENHWRYREINNGWE 102


>gi|257891593|ref|ZP_05671246.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257827953|gb|EEV54579.1| transcriptional regulator [Enterococcus faecium 1,231,410]
          Length = 147

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       S +++ KI          
Sbjct: 11 LKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTA-----SIKTMRKIFDQLESFNPD 64


>gi|257888763|ref|ZP_05668416.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257824817|gb|EEV51749.1| transcriptional regulator [Enterococcus faecium 1,141,733]
          Length = 72

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + E  +L    LA+   +  T++++ +   ++       T+S+ K+    + +I  
Sbjct: 4  RIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLD-----IPTQSLIKLADFYSTSIDY 58

Query: 72 LLDLPFSDGRTTEK 85
          LL+L          
Sbjct: 59 LLNLTDQKEPYPRN 72


>gi|238754555|ref|ZP_04615909.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473]
 gi|238707186|gb|EEP99549.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473]
          Length = 166

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +  E +  +     ++    A + G   +  ++ +R G        S ++I  
Sbjct: 13 MKKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNA-----SLDAIEV 67

Query: 61 ILAATNETICQ 71
          +  A +    Q
Sbjct: 68 LANALSVEPWQ 78


>gi|223041638|ref|ZP_03611835.1| putative transcriptional regulator [Actinobacillus minor 202]
 gi|240948104|ref|ZP_04752514.1| putative transcriptional regulator [Actinobacillus minor NM305]
 gi|223017502|gb|EEF15916.1| putative transcriptional regulator [Actinobacillus minor 202]
 gi|240297584|gb|EER48076.1| putative transcriptional regulator [Actinobacillus minor NM305]
          Length = 99

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 2  TSFSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           + S + I E  +  + E  N++   LA   G+   +  K ++     ++  P   ++ +
Sbjct: 20 KALSEQLIQEVGLAHLREELNISQKQLAEALGISQPAVAKIEQ-----KDNDPRLSTLKR 74

Query: 61 ILAATN 66
           + A  
Sbjct: 75 YIEAMG 80


>gi|213972069|ref|ZP_03400162.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          tomato T1]
 gi|213923155|gb|EEB56757.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          tomato T1]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +    + H      LA   G +  + ++ +R         P+ + + K+  A   +
Sbjct: 8  IGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGT-----PNLDHLVKLCVALKIS 62

Query: 69 ICQLLDLPFSDGRTTEKK 86
            +LL             
Sbjct: 63 PAELLPADGISSSREHLP 80


>gi|91773669|ref|YP_566361.1| XRE family transcriptional regulator [Methanococcoides burtonii
          DSM 6242]
 gi|91712684|gb|ABE52611.1| Helix-turn-helix-containing transcriptional regulator, XRE family
          [Methanococcoides burtonii DSM 6242]
          Length = 65

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           I  +  R++LT   LA+K G+   +    ++       +   T  I K+  +T
Sbjct: 4  RIKELRARYDLTQEELAKKVGVRRETILFLEKGKYNPSLKLAYT--IAKVFDST 55


>gi|16126471|ref|NP_421035.1| Cro/CI family transcriptional regulator [Caulobacter crescentus
          CB15]
 gi|221235251|ref|YP_002517688.1| Cro/CI family transcriptional regulator [Caulobacter crescentus
          NA1000]
 gi|13423739|gb|AAK24203.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus
          CB15]
 gi|220964424|gb|ACL95780.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus
          NA1000]
          Length = 64

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            +  +    + + + LA +  +   + N  +    +     PS    FKI     + 
Sbjct: 3  NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYD-----PSLPLAFKIARLFGQP 55


>gi|81427908|ref|YP_394907.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78609549|emb|CAI54595.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 103

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I + I    ++  LT   LA K+G   +  ++ +R  ++        + +  I  A  
Sbjct: 3  DTISQMIREHRKQLGLTIEELAEKSGSSYSFISRIERGEVD----NLKIKKLNDIAEALG 58

Query: 67 ETICQLL 73
            +    
Sbjct: 59 IELIDFF 65


>gi|23100309|ref|NP_693776.1| hypothetical protein OB2854 [Oceanobacillus iheyensis HTE831]
 gi|22778541|dbj|BAC14810.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 179

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E + +  E+   +   LA K  +   S +K +         +PS E I  +    + TI
Sbjct: 31  GEKLKKEREKRGWSQDYLAEKVYVSRQSVSKWETGKN-----YPSIEVIINLSDLFDITI 85

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYF 95
            +LL           +  K++    +
Sbjct: 86  DELLRSDEELKEKVIRDSKQLAYPKW 111


>gi|67925835|ref|ZP_00519128.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501]
 gi|67852317|gb|EAM47783.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M      +I  AI     +  LT   LA++     +   + +           + +++ +
Sbjct: 24 MAM--EFEIASAIIAARTQAGLTQEELAQRMCAKQSQIARWESGEQNA-----TLKTLKR 76

Query: 61 ILAATNET 68
          I  AT   
Sbjct: 77 IAEATGTN 84


>gi|329295509|ref|ZP_08252845.1| XRE family transcriptional regulator [Plautia stali symbiont]
          Length = 99

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 7  KKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +KI E  + ++ E   L+   LA K G+   +    +      R       S+ K + A 
Sbjct: 25 EKILEIRLRQLREELALSQVQLAEKMGVSQPAIAAIE-----ARGDELKLSSLKKYVEAL 79

Query: 66 N 66
           
Sbjct: 80 G 80


>gi|322374109|ref|ZP_08048643.1| putative transcriptional regulator [Streptococcus sp. C150]
 gi|321277075|gb|EFX54146.1| putative transcriptional regulator [Streptococcus sp. C150]
          Length = 69

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + + + ++ + LA + G+   +    ++          S E  FKI     +TI ++
Sbjct: 9  IQELRKANKISQAELADEMGVTRQTIISLEKGRYNA-----SLELAFKIARYFGKTIEEV 63

Query: 73 LDLPF 77
               
Sbjct: 64 FLFEE 68


>gi|304311160|ref|YP_003810758.1| hypothetical protein HDN1F_15230 [gamma proteobacterium HdN1]
 gi|301796893|emb|CBL45106.1| conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 82

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 1  MTS-FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          MTS  S +++  A+    ++  LT   LA  AG+        +      R      E++ 
Sbjct: 1  MTSIRSPQQLGHALRAARKQLGLTQPQLALAAGVGVRFIVDLEAGNPTLR-----LENVL 55

Query: 60 KILAATN 66
          +++ A  
Sbjct: 56 RVIDALG 62


>gi|301382108|ref|ZP_07230526.1| peptidase [Pseudomonas syringae pv. tomato Max13]
          Length = 151

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 33/139 (23%), Gaps = 6/139 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +    +   LT   LA   G+   + ++ +R           T  + +I  A    
Sbjct: 10  LGGRVKLARDATGLTQLELAELVGVSQAAISEIERGESA------RTAYLPEISRACGAD 63

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           I  L            +    +       S           P     N +          
Sbjct: 64  IQWLAFGGERPASEPCEPAPTVAEKPQEISFCIEGMGFSGMPLKRVANYISALSDLVGKT 123

Query: 129 GIYAIQTQDTRHKTQDTSM 147
            I+   T  +      +S 
Sbjct: 124 AIFIRMTDSSIVFYDGSSS 142


>gi|300725156|ref|YP_003714484.1| putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061]
 gi|297631701|emb|CBJ92414.1| Putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I +++ R   R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A N  
Sbjct: 8   IAKSLVRERARTGLSLAEVARRAGIAKSTLSQLEAGNGN-----PSLETLWALCVALNIP 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVP 121
             +LL+   +  +   + E    +       +            + +  +  P
Sbjct: 63  FARLLEPQSNQTQVIRRGEGTKVVAERANYQATLLATCPPGARRDIYLLITQP 115


>gi|312198964|ref|YP_004019025.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311230300|gb|ADP83155.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 221

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   + R+ +   LT + LA ++G+     +K +           S  ++ ++  A +  
Sbjct: 36  IAAQVRRLRQGAGLTLAELATRSGISKPMLSKIENANTSC-----SLTTLARLADALDVP 90

Query: 69  ICQLLDLPFSDGRTTEKKE 87
           +  L               
Sbjct: 91  VTALFRGADDQREAVFTPA 109


>gi|261408465|ref|YP_003244706.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261284928|gb|ACX66899.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10]
          Length = 189

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           HKK+   +  + +   L+   +A   G+      + +R         P+   +++I++  
Sbjct: 5   HKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSN-----PTISVLWRIVSGL 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
             +   L++   ++       + E              F
Sbjct: 60  GISFTTLIEEAETEVTVVSPDDVEPFHEAEGAYRVYPLF 98


>gi|166364680|ref|YP_001656953.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
 gi|166087053|dbj|BAG01761.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          +   + I +       +   LA+  G+D T  +K +             ES+ 
Sbjct: 3  ETFGQVIRKARREEEYSQRELAKLIGVDYTYLSKLENDHAGYPPSQQVIESLA 55


>gi|332364291|gb|EGJ42066.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1059]
          Length = 99

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          E +  +    NLT   +A K  +   ++   +        R P  E++ K     
Sbjct: 4  ERLKSLRLEANLTQKQVAEKLNMSQPAYQSWESG-----KRKPGEETLNKFANFF 53


>gi|332560550|ref|ZP_08414868.1| hypothetical protein RSWS8N_15929 [Rhodobacter sphaeroides WS8N]
 gi|332274348|gb|EGJ19664.1| hypothetical protein RSWS8N_15929 [Rhodobacter sphaeroides WS8N]
          Length = 212

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 28/198 (14%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           +A+ R  +    +   +  KAG+         +  ++G++   + +   KI AA   +  
Sbjct: 7   DALARALKETKRSLRSVCLKAGVSY----DQMKSLMQGKSGSTNIDDGIKIAAAFGVS-- 60

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
                          ++  + +     +G+        +  G+    V  P    PH   
Sbjct: 61  -----IEDFFAGVFDRQPSVAVAGKVGAGAHVDLVDA-YAKGDGMYHVACPPQLKPHG-- 112

Query: 131 YAIQTQDTRHKTQDTSMLPLYRKGDILILNSAI------QVNCGDRLLIKPRTGDIVAKV 184
                     + +  SMLPL+R G +L    A       +       + +   G    KV
Sbjct: 113 ------IVAVEVEGDSMLPLHRPGSVLFYTRAAAEGVPVEAVN-SPCVCEDVDGRAWLKV 165

Query: 185 LISRR-GRSIDLMSLNCC 201
           +       +  L+SLN  
Sbjct: 166 VKIGSQEGTFSLLSLNPD 183


>gi|319647196|ref|ZP_08001418.1| immunity repressor protein [Bacillus sp. BT1B_CT2]
 gi|317390543|gb|EFV71348.1| immunity repressor protein [Bacillus sp. BT1B_CT2]
          Length = 147

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +    ++   T + LA KA +  +     +R         PS E++  I  A N  
Sbjct: 3  VGQRLKYWRKQKGYTQAQLAEKANMSRSYVADVERDRYN-----PSVETLSSIAKALNIP 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIP 91
          +  LL+        + ++ +   
Sbjct: 58 VSNLLEDNQRLVSESPEEYRTSE 80


>gi|317500517|ref|ZP_07958740.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089383|ref|ZP_08338282.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|316898106|gb|EFV20154.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404751|gb|EGG84289.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 4/36 (11%), Positives = 11/36 (30%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
            +  +     L    LA K  +   + ++ +    
Sbjct: 4  NRVKELRTERGLRQGDLAEKMNVSQQTISRIENGEN 39


>gi|315163418|gb|EFU07435.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
          Length = 78

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 3/51 (5%)

Query: 3  SFSHKKIW---EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
               +I      + R  +    + + LA+K  +     +  +      + 
Sbjct: 1  MEQEGRIMKKVSNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKP 51


>gi|306838790|ref|ZP_07471622.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
 gi|306406126|gb|EFM62373.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
          Length = 73

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 25/77 (32%), Gaps = 9/77 (11%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M       +     R+     LT   +  ++G      +  ++       R P+  ++++
Sbjct: 1  MRKL----VGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQG-----RRNPTVITLYE 51

Query: 61 ILAATNETICQLLDLPF 77
          +  A   +  +L     
Sbjct: 52 LAQALGVSHVELFKPDE 68


>gi|269955724|ref|YP_003325513.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269304405|gb|ACZ29955.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 505

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I  +     +T   LA   G  P+  +  +        R P+   +  +  A    
Sbjct: 29 IGRRIRHLRTERGMTLDDLAAAIGKAPSQVSLLENG-----KREPTIARLQAVARALGAG 83

Query: 69 ICQ 71
          +  
Sbjct: 84 VED 86


>gi|254462341|ref|ZP_05075757.1| hypothetical protein RB2083_2932 [Rhodobacterales bacterium
          HTCC2083]
 gi|206678930|gb|EDZ43417.1| hypothetical protein RB2083_2932 [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 68

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 10/74 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    H      +         T + LA   G+   S N  +      R   PST    +
Sbjct: 1  MAKL-HNT----LKAHRTDKGFTQASLAEAVGVSRKSINTIEN-----RVFTPSTLLALQ 50

Query: 61 ILAATNETICQLLD 74
          I  A   ++  +  
Sbjct: 51 IADALECSVHDIFY 64


>gi|159027322|emb|CAO86864.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          +   + I +       +   LA+  G+D T  +K +             ES+ 
Sbjct: 3  ETFGQVIRKARREEEYSQRELAKLIGVDYTYLSKLENDHAGYPPSQQVIESLA 55


>gi|118575669|ref|YP_875412.1| transcriptional regulator [Cenarchaeum symbiosum A]
 gi|118194190|gb|ABK77108.1| transcriptional regulator [Cenarchaeum symbiosum A]
          Length = 185

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I ++  +  +T   LA  AG+  +  N+ +    +     PS E+  +I    
Sbjct: 8  IRQVRTKLGITQKRLASLAGVSTSMINQIESGRSQ-----PSYETAKRIFDNL 55


>gi|70731576|ref|YP_261317.1| RulA protein [Pseudomonas fluorescens Pf-5]
 gi|68345875|gb|AAY93481.1| RulA protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 148

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 136 QDTRHKTQDTSMLP-LYRKGDILILNSAIQVNCGDR-LLIKPRTGDIVAKVLISRRGRSI 193
           Q       D ++L      GD LI++ +         ++      +   ++L       +
Sbjct: 51  QIHGLLVDDDNLLGFGIYPGDRLIVDRSATPAVDQYLVVRAQGASEYSLRLLAPDPRGGL 110

Query: 194 DLMSLNCCYPVDTV-EMSDIEWIARILWA 221
            L +     P   + ++  IE    +LW 
Sbjct: 111 LLKAARPSIPSIVLDDLGSIEIWGVVLWV 139


>gi|11499701|ref|NP_070943.1| inosine monophosphate dehydrogenase (guaB-2) [Archaeoglobus
           fulgidus DSM 4304]
 gi|2648410|gb|AAB89133.1| inosine monophosphate dehydrogenase (guaB-2) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 183

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 22/181 (12%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           I R  ++  L+   LA   G+      + +    +     P    + K+L    E     
Sbjct: 8   IRRKRKKLGLSQKKLAELVGVSQPLIARIEAGKFD-----PKLSLVKKMLRVLEEIEGGR 62

Query: 73  LDLPFSDGRT-----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
           ++                  K +  L      S           G       V  +    
Sbjct: 63  VEARVVMNSPVIFVSPSDSLKTVAELMTEKEISQLPVMENDKLVGGVTEADVVRAVLEKG 122

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL-------NSAIQVNCGDRLLIKPRTGDI 180
            G  +I+ +    +       P+    + + +       + A+ V  G++++      D+
Sbjct: 123 EGAESIRVR----EVMGDPF-PVVDPEESVNVVSKLLMEHPAVLVVQGEKVVGIITKQDV 177

Query: 181 V 181
           +
Sbjct: 178 M 178


>gi|28379166|ref|NP_786058.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|254557296|ref|YP_003063713.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|300768612|ref|ZP_07078511.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308181362|ref|YP_003925490.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|28272004|emb|CAD64909.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|254046223|gb|ACT63016.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|300493919|gb|EFK29088.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308046853|gb|ADN99396.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 106

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +  +I + I +  ++H +T   LA ++ +  +  ++ +R    G+      +S+  I 
Sbjct: 1  MLT--EIGKIIRQRRQQHGITIEQLAEQSNVSISLISRLER----GKVDNIKLQSLTAIA 54

Query: 63 AATNETICQLLDLPFSDGRT 82
             N  I             
Sbjct: 55 ETLNLKIADFFRDELLQSPN 74


>gi|84517224|ref|ZP_01004579.1| hypothetical protein SKA53_00255 [Loktanella vestfoldensis SKA53]
 gi|84508899|gb|EAQ05361.1| hypothetical protein SKA53_00255 [Loktanella vestfoldensis SKA53]
          Length = 97

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 1  MTSFSHK-KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          M+S + + KI   +        ++ + LA + G+  ++  + +R    
Sbjct: 1  MSSRTDEMKISIVLRAARSGLGISQADLASELGVSQSTITRCERGAGS 48


>gi|115525178|ref|YP_782089.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisA53]
 gi|115519125|gb|ABJ07109.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisA53]
          Length = 472

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          +   + R+ E+  LT + LA K G+  +  N+ +     
Sbjct: 6  LGVRLKRLREQQRLTQAALAAKLGISLSYLNQLENNQRP 44


>gi|99082324|ref|YP_614478.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038604|gb|ABF65216.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040]
          Length = 187

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 41/148 (27%), Gaps = 12/148 (8%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S + I   +  +     L+ S  A   G+      + +R         P+  +++KI  
Sbjct: 1   MSDESITLNLREIRAAAGLSLSRAAELTGVSKAMLGQIERGES-----SPTIATLWKIAK 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS------GVFPTGNKWNT 117
             +  +  L++        + +  + +             +D                + 
Sbjct: 56  GFHLPLTALIEESTRPSGRSGEVYRTVEFPGSIAVKIVFPYDPSLGAETFHVSLKPGQSH 115

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDT 145
             +P        ++ ++ +    +    
Sbjct: 116 ESLPHDTGVTEEVFVLEGRMEVLR-DGD 142


>gi|332362047|gb|EGJ39849.1| transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 158

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I + I  + + + LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 2  IGDNIKSLRKTNELTQPEFARIVGISRNSLSRYENGISP-----ISTELIDTICQKFNVS 56

Query: 69 ICQLLDLPFSDGRTT 83
             ++          
Sbjct: 57 YVDIVGEEKMLNPVE 71


>gi|327396677|dbj|BAK14098.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 8/124 (6%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   +  + +  N+T   LA++A +   + ++ +R       R    E +  +L     
Sbjct: 19  NIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRV--LEQLRVVLNVPLT 76

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN---TVGVPEIR 124
              +  ++         ++ +E P       G  G     + P+G        + +P   
Sbjct: 77  AFLEQHEVMRPGAEHYVRRWRERPHF---QVGKHGISKEMLSPSGEHDIQFMYISIPPRT 133

Query: 125 SPHN 128
               
Sbjct: 134 RSEE 137


>gi|319651012|ref|ZP_08005147.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2]
 gi|317397368|gb|EFV78071.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2]
          Length = 149

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 21  NLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDG 80
             +   LA K  +   S +K +         +PS E I K+      TI +LL       
Sbjct: 15  GWSQEDLAEKLFVSRQSVSKWENGQN-----YPSIEIIIKLSDLFGVTIDELLRSDEELT 69

Query: 81  RTTEKKEKEIPLLYFPPSGSG 101
               K  +++           
Sbjct: 70  EKVIKDSRQLAYPRLKVFFDC 90


>gi|313609103|gb|EFR84807.1| ans operon transcriptional repressor, putative [Listeria
          monocytogenes FSL F2-208]
          Length = 131

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIF 59
          M   S+      +  + E+   + +  AR+ GL  P+++   +        R P  E + 
Sbjct: 1  MPKLSN-----RLTLLREKQGWSKAETARRLGLSAPSTYGNWEYGI-----REPDLEMVT 50

Query: 60 KIL 62
          +I 
Sbjct: 51 QIA 53


>gi|311069888|ref|YP_003974811.1| transcriptional repressor [Bacillus atrophaeus 1942]
 gi|310870405|gb|ADP33880.1| transcriptional repressor [Bacillus atrophaeus 1942]
          Length = 134

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
            E +  + E   LT + LA  +G+     ++ +     G  +  + + + + L    E +
Sbjct: 4   GEQLRTLREERKLTVNQLAIYSGVSAAGISRIENGKR-GVPKPATIKKLAEALKIPYEDL 62

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
            +            E       L+    S  
Sbjct: 63  MKKAGYIEEIREARETYSTSCKLIEKAQSYQ 93


>gi|302063488|ref|ZP_07255029.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato K40]
          Length = 129

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +    + H      LA   G +  + ++ +R         P+ + + K+  A   +
Sbjct: 19 IGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGT-----PNLDHLVKLCVALKIS 73

Query: 69 ICQLLDLPFSDGRTTEKK 86
            +LL             
Sbjct: 74 PAELLPADGISSSREHLP 91


>gi|297195428|ref|ZP_06912826.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152779|gb|EDY63104.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 41/146 (28%), Gaps = 11/146 (7%)

Query: 1   MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
           M   +         + + I  +      +   LA +  L  ++ ++ +        R  +
Sbjct: 7   MLPMTQDNGELDSLVRKRIRALRVAQGWSLEELAARGRLSQSTLSRIENGH-----RRLA 61

Query: 55  TESIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
            + +  +  A + ++ QL++    D  +    +    L+ +P     G        T   
Sbjct: 62  LDQLVTLARALDTSLDQLVETATDDVVSNPMIDGAHGLMRWPIKAEPGMTVVRQRMTDPP 121

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRH 140
            +             +  +       
Sbjct: 122 PDNPARMRAHPGREWLVVLSGTAVLL 147


>gi|282865024|ref|ZP_06274077.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282559947|gb|EFB65496.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 401

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I + +  + E  ++T   LA+++G+   +  K ++   E   R  +  ++ + L 
Sbjct: 5  IGDRVRALREFRDITQDQLAQRSGVSVDTIRKLEQGVRE-SARINTLRNLARALD 58


>gi|326203738|ref|ZP_08193601.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325986178|gb|EGD47011.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 169

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          E I  + +   L+   LA K  +   + +K ++     
Sbjct: 4  ENIKAIRKSKGLSQEELAIKLNVVRQTISKWEQGLSVP 41


>gi|227894470|ref|ZP_04012275.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM
          16047]
 gi|227863629|gb|EEJ71050.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM
          16047]
          Length = 325

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++ + I  + +++NL+   LA +  +   + +K +          P  E I  +     
Sbjct: 2  RLGQKIADLRKKNNLSQEDLAEEMNVSRQAVSKWESDQSI-----PDIEKIVNLSEFFG 55


>gi|169786953|ref|YP_001708765.1| putative HTH-like transcriptional regulator, phage-related
          [Acinetobacter baumannii AYE]
 gi|293611295|ref|ZP_06693592.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|169147114|emb|CAM84777.1| putative HTH-like transcriptional regulator, phage-related
          [Acinetobacter baumannii AYE]
 gi|292826306|gb|EFF84674.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 16 MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
                L+ + +A + G    + ++ ++  I G+   PS  ++ K  AA  + 
Sbjct: 38 ARRDAGLSQAQIAERMGTSVPAVSRLEKALITGKP-SPSIATLQKYAAAIGKH 89


>gi|149203901|ref|ZP_01880869.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          TM1035]
 gi|149142343|gb|EDM30388.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          TM1035]
          Length = 133

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
           + +    ER  ++ S LA++ G+   +    +    E R    S 
Sbjct: 18 GDRVTGARERSGMSQSDLAKRLGVKLKTLKAWENDLSEPRANKLSM 63


>gi|115377966|ref|ZP_01465149.1| putative transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
 gi|115365023|gb|EAU64075.1| putative transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
          Length = 172

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            A+ +  +R  +T +  A   G+ P  + + +R G+      PS  ++ ++         
Sbjct: 59  AALKQARKRAGMTQAEAAEGIGIAPEVYGRMERGGV-----LPSVPTLLRMCLILGSGPH 113

Query: 71  QLLDLPFSDGRTTEKKEKEIP 91
           +L+     +   +      +P
Sbjct: 114 ELMGFAEVESGQSAPGANTVP 134


>gi|30019187|ref|NP_830818.1| transcriptional repressor [Bacillus cereus ATCC 14579]
 gi|229108598|ref|ZP_04238210.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15]
 gi|229126443|ref|ZP_04255458.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4]
 gi|229143741|ref|ZP_04272162.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24]
 gi|29894730|gb|AAP08019.1| Transcriptional repressor [Bacillus cereus ATCC 14579]
 gi|228639694|gb|EEK96103.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24]
 gi|228657023|gb|EEL12846.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4]
 gi|228674853|gb|EEL30085.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15]
          Length = 149

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKIIEDSKQLAYPKW 84


>gi|21219819|ref|NP_625598.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289772984|ref|ZP_06532362.1| transcriptional regulatory protein [Streptomyces lividans TK24]
 gi|14575569|emb|CAC42859.1| putative transcriptional regulatory protein [Streptomyces
           coelicolor A3(2)]
 gi|289703183|gb|EFD70612.1| transcriptional regulatory protein [Streptomyces lividans TK24]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 19/149 (12%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  ++ KI  A  
Sbjct: 20  QSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTN-----PSLGTVVKIGDALG 74

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYF-----------PPSGSGGFFDSGVFPTGNKW 115
            +I  LLD            ++ + L +              +             G   
Sbjct: 75  VSITTLLDWEQGPAVRVVPADEAVRLWHTDAGSFSRLLAGVEAPGPLEMWEWRLMPGESS 134

Query: 116 NTVGVPEIRSPHNGIYAIQTQDTRHKTQD 144
            +   P        +  + + +       
Sbjct: 135 LSDPHPTGTVE---LVHVTSGELALTVDG 160


>gi|119356485|ref|YP_911129.1| XRE family transcriptional regulator [Chlorobium phaeobacteroides
          DSM 266]
 gi|119353834|gb|ABL64705.1| transcriptional regulator, XRE family [Chlorobium
          phaeobacteroides DSM 266]
          Length = 91

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          +I E + +  +R  LT   LA K     ++ ++ +    + R    S
Sbjct: 30 RIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSEDIRLSTLS 76


>gi|324997834|ref|ZP_08118946.1| XRE family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 187

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + E +      H L+   LA +AG+   S ++ +       +R P+  +++ +     
Sbjct: 10 VGERLRSARTAHGLSVGALAARAGIGKGSLSELENG-----SRNPTLSTLYALANTLG 62


>gi|319412023|emb|CBY91956.1| putative transcriptional regulator [Streptococcus pneumoniae]
          Length = 158

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          I + I  + + H LT    AR  G+   S ++ +     
Sbjct: 2  IGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSS 40


>gi|301166078|emb|CBW25652.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 134

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  + E+  L+   +A   GL  +  ++ +     GR   PS E +  +L          
Sbjct: 19 LKSLREKKKLSTREVAEALGLSGSYISQIEN----GRTNVPSGERMLSLLELYGIKPKYF 74

Query: 73 LDLPFSDGRTTEKKEKEIPLL 93
            L         +  K   LL
Sbjct: 75 KQLVKEWKDGPNELVKAQELL 95


>gi|298292822|ref|YP_003694761.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929333|gb|ADH90142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 72

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K +     R+ +  +LT   +A ++GL     +  +R       R P+  ++++
Sbjct: 1  MDM--RKLVGRNFARLRQAKDLTQEQVAERSGLSQQYLSGLERG-----RRNPTIITLYE 53

Query: 61 ILAATNETICQ 71
          +  A + +  +
Sbjct: 54 LARALDVSHVE 64


>gi|296131246|ref|YP_003638496.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
 gi|296023061|gb|ADG76297.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
          Length = 78

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 16/46 (34%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
          ++   +  + ER  L+   LA   G+D     + +        R  
Sbjct: 17 ELGAFLRHVRERRGLSQDALADALGIDRRYVYQIESGSPTLYTRRL 62


>gi|257051844|ref|YP_003129677.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
          12940]
 gi|256690607|gb|ACV10944.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
          12940]
          Length = 70

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +     + ++T   LA   G+   + N  +R   +     PS E  FK+    +  I  +
Sbjct: 5  LKVWRAKEDITQGELADAVGVSRQTINALERERYD-----PSLELAFKLARHFDCAIEDI 59

Query: 73 LDLP 76
           +  
Sbjct: 60 FEYD 63


>gi|162147757|ref|YP_001602218.1| HTH-type transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209542381|ref|YP_002274610.1| XRE family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161786334|emb|CAP55916.1| putative HTH-type transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530058|gb|ACI49995.1| transcriptional regulator, XRE family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 80

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I        LT   LA    ++P +    +R   +     PS E   KI     
Sbjct: 3  NRIAMFRAERGLTRRALAEAVEVNPQTIGYLERGDYK-----PSLELALKICRVLG 53


>gi|160915853|ref|ZP_02078061.1| hypothetical protein EUBDOL_01875 [Eubacterium dolichum DSM 3991]
 gi|158432329|gb|EDP10618.1| hypothetical protein EUBDOL_01875 [Eubacterium dolichum DSM 3991]
          Length = 109

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++ + I       N+T + LA+K  +   S +             P  E++ KI      
Sbjct: 2  QLGDIIQAQLTMKNMTQTDLAKKINIGQRSISNYVNNKS-----LPDLETLAKICNILEI 56

Query: 68 TIC 70
           I 
Sbjct: 57 DIY 59


>gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753]
 gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753]
          Length = 169

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          E I  + +   L+   LA K  +   + +K ++     
Sbjct: 4  ENIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVP 41


>gi|153009178|ref|YP_001370393.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151561066|gb|ABS14564.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
          49188]
          Length = 76

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKR 43
              + + + +  + +   L+   LA +A +D T  +  +R
Sbjct: 1  MEIREVLAQNLKALRQARGLSQEELAHRADIDRTYVSSLER 41


>gi|110802539|ref|YP_697891.1| signal peptidase I [Clostridium perfringens SM101]
 gi|169342351|ref|ZP_02863418.1| signal peptidase I [Clostridium perfringens C str. JGS1495]
 gi|110683040|gb|ABG86410.1| signal peptidase I [Clostridium perfringens SM101]
 gi|169299576|gb|EDS81639.1| signal peptidase I [Clostridium perfringens C str. JGS1495]
          Length = 176

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRT-GDIVAKVLISRRGRS 192
             + K    SM+P    GD L +      N    GD ++       + + K +I   G  
Sbjct: 34  LFKIKVPTGSMMPTVEIGDQLFVTKIYNPNNIKRGDIVVFNSDELKEPLLKRVIGLPGEH 93

Query: 193 IDLMSL 198
           +++ S 
Sbjct: 94  VEIKSD 99


>gi|110636925|ref|YP_677132.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110279606|gb|ABG57792.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 75

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          K I + I  + E   L+   L+ ++G+  +   + +  
Sbjct: 12 KTIGKKIKTLREAKGLSQYALSDESGISRSQIVRLENG 49


>gi|116495433|ref|YP_807167.1| XRE family transcriptional regulator [Lactobacillus casei ATCC
          334]
 gi|89953886|gb|ABD83417.1| hypothetical protein Lcas063 [Lactobacillus casei ATCC 334]
 gi|116105583|gb|ABJ70725.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC
          334]
          Length = 81

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +        ++   LA++ G+   + +  +     G+ + P+T    +I      ++  +
Sbjct: 5  LRHYRREKEMSQLELAKQVGVTRLTISNIE----TGKTKDPATSITLRISEILGHSVDAI 60

Query: 73 LDLPFSDGRTTEKKEKEIPL 92
                +       ++E  +
Sbjct: 61 FGSENVNLDKHIPAQREEAV 80


>gi|194467259|ref|ZP_03073246.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
 gi|194454295|gb|EDX43192.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            I +       T + +A K  +   + +  ++        +P  +++ KI      +
Sbjct: 5  NYIKKQRNNLGFTQAEIAEKLHVTRQTISNWEQGKS-----YPDLDTLVKISDIYKIS 57


>gi|78189240|ref|YP_379578.1| XRE family transcriptional regulator [Chlorobium chlorochromatii
          CaD3]
 gi|78171439|gb|ABB28535.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii
          CaD3]
          Length = 86

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 18/43 (41%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45
           F+   + +A+    +   L+   +A++  +   + N+ +   
Sbjct: 1  MFTMDDLGQALRERRKLLGLSQLEVAKRNNISRITINRLENGR 43


>gi|29376415|ref|NP_815569.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|227519230|ref|ZP_03949279.1| replication initiation protein [Enterococcus faecalis TX0104]
 gi|229545527|ref|ZP_04434252.1| replication initiation protein [Enterococcus faecalis TX1322]
 gi|255975566|ref|ZP_05426152.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256619367|ref|ZP_05476213.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256853409|ref|ZP_05558779.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256961616|ref|ZP_05565787.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256964832|ref|ZP_05569003.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257090178|ref|ZP_05584539.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|293384440|ref|ZP_06630320.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|293389181|ref|ZP_06633645.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|307272916|ref|ZP_07554163.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|307275669|ref|ZP_07556810.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307295992|ref|ZP_07575824.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|312902671|ref|ZP_07761875.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|312908394|ref|ZP_07767357.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312910535|ref|ZP_07769377.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|29343878|gb|AAO81639.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|227073317|gb|EEI11280.1| replication initiation protein [Enterococcus faecalis TX0104]
 gi|229309443|gb|EEN75430.1| replication initiation protein [Enterococcus faecalis TX1322]
 gi|255968438|gb|EET99060.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256598894|gb|EEU18070.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256711868|gb|EEU26906.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256952112|gb|EEU68744.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256955328|gb|EEU71960.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256998990|gb|EEU85510.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|291078223|gb|EFE15587.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|291081486|gb|EFE18449.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|306496323|gb|EFM65902.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306507774|gb|EFM76903.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306510530|gb|EFM79553.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|310625614|gb|EFQ08897.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|310633725|gb|EFQ17008.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|311289083|gb|EFQ67639.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|315028935|gb|EFT40867.1| helix-turn-helix protein [Enterococcus faecalis TX4000]
 gi|315033315|gb|EFT45247.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
 gi|315143537|gb|EFT87553.1| helix-turn-helix protein [Enterococcus faecalis TX2141]
 gi|315161496|gb|EFU05513.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315576934|gb|EFU89125.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          +      + ++ + LA   GL     N+ +  G+       ST+++ KI          
Sbjct: 11 LKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTA-----STKTMRKIFNQLESFNPD 64


>gi|330819140|ref|YP_004348002.1| DNA-binding protein [Burkholderia gladioli BSR3]
 gi|327371135|gb|AEA62490.1| DNA-binding protein [Burkholderia gladioli BSR3]
          Length = 204

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 26  RVGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 80

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++ +L   P S          +IP L    +         +   G ++    +
Sbjct: 81  SLDELFAQPKSPETIRVDGLHDIPTLSGHDNQYQLRVWGPIELAG-RFEWYEL 132


>gi|325261368|ref|ZP_08128106.1| DNA-binding protein [Clostridium sp. D5]
 gi|324032822|gb|EGB94099.1| DNA-binding protein [Clostridium sp. D5]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I +  +  +++   LA   G+   + +K +          P TE++ ++      +
Sbjct: 3  LGEKIQKHRKEKSMSQEELAALLGVSRQAVSKWELNDTI-----PDTENVIQLGKILEVS 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
          +  LL                  +
Sbjct: 58 LDYLLKPERETPDEGGDTATAGNV 81


>gi|313575261|emb|CBI71200.1| hypothetical protein [uncultured bacterium]
          Length = 75

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 9  IWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          I  +I R+   H  +T   LA + G+   +    ++         PS E+ F+I      
Sbjct: 6  ISNSIRRLRFDHGEMTQQELADRIGMTRQTIAAIEQNKY-----SPSLEAAFRIAEVFGV 60

Query: 68 TICQLLDLP 76
           I  +    
Sbjct: 61 PIGDVFQWK 69


>gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07]
 gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07]
          Length = 169

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E I  + +   L+   LA K  +   + +K ++         P ++ +  I       
Sbjct: 4  ENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSV-----PDSDMLISISEVLETP 56


>gi|291548789|emb|CBL25051.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 294

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I    +   ++   +A K  +   + +K ++         P  + + ++    + +
Sbjct: 2  INENIKHFRKTRGMSQEEMAVKLNVVRQTVSKWEKGLSI-----PDADVLIEMANLLDVS 56

Query: 69 ICQLLDLPFSDGRTTE 84
          + QLL +  S      
Sbjct: 57 VSQLLGIEESIHSNGN 72


>gi|261885316|ref|ZP_06009355.1| hypothetical protein CfetvA_09170 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 61

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 168 GDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEMSDI---EWIARIL 219
           GD L    R+GDI    +      +S+ L+S N  Y    +E++D+   + I R++
Sbjct: 1   GDILHAC-RSGDIFRTRVNEYPVTKSLTLISDNPKYEPIQIEVADLTHCKIIGRVV 55


>gi|188994791|ref|YP_001929043.1| hypothetical protein PGN_0927 [Porphyromonas gingivalis ATCC
          33277]
 gi|188594471|dbj|BAG33446.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
          33277]
          Length = 67

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I  + E   +  + LA K G   +  N   R       R PS E++F+I       +
Sbjct: 1  MNRIKEVLEEKGIKQTWLAEKLGKSFSIVNAYVRN-----RRQPSLETLFQIAEILGVEV 55

Query: 70 CQ 71
           +
Sbjct: 56 KE 57


>gi|169335030|ref|ZP_02862223.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257768|gb|EDS71734.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 310

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  + + HNL+   LA K  +   + +K +         +P  + +  +    +  + +
Sbjct: 9  NLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTS-----YPEMDKLLILCDIFSLNMDE 63


>gi|116872704|ref|YP_849485.1| signal peptidase I [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741582|emb|CAK20706.1| signal peptidase I [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 180

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                 SM+P     D +I+N    V+  D ++ + + G    K +I   G +++  + 
Sbjct: 34  ILVDGISMMPTLHNDDRVIINRFGHVDRFDVIVFREKDGKEYIKRVIGLPGDTVEYKAD 92


>gi|62736383|gb|AAX97501.1| putative transcriptional regulator [Lactobacillus reuteri]
          Length = 125

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI   I        +T   LA    L     ++ +R  +E   R  +   I K L  T E
Sbjct: 3  KIGVNISHRRHELKMTQEELANATDLSTNYVSRLERGEVE-YIRALTLSKIAKGLKTTME 61

Query: 68 TICQLLDLPFSDGRTTEK 85
           +              + 
Sbjct: 62 KLIDGNTNQQHIRGHYQS 79


>gi|18309579|ref|NP_561513.1| signal peptidase type I [Clostridium perfringens str. 13]
 gi|110799433|ref|YP_695031.1| signal peptidase I [Clostridium perfringens ATCC 13124]
 gi|168206715|ref|ZP_02632720.1| signal peptidase I [Clostridium perfringens E str. JGS1987]
 gi|168211699|ref|ZP_02637324.1| signal peptidase I [Clostridium perfringens B str. ATCC 3626]
 gi|168214786|ref|ZP_02640411.1| signal peptidase I [Clostridium perfringens CPE str. F4969]
 gi|168217956|ref|ZP_02643581.1| signal peptidase I [Clostridium perfringens NCTC 8239]
 gi|182625738|ref|ZP_02953506.1| signal peptidase I [Clostridium perfringens D str. JGS1721]
 gi|18144256|dbj|BAB80303.1| probable signal peptidase type I [Clostridium perfringens str. 13]
 gi|110674080|gb|ABG83067.1| signal peptidase I [Clostridium perfringens ATCC 13124]
 gi|170661831|gb|EDT14514.1| signal peptidase I [Clostridium perfringens E str. JGS1987]
 gi|170710344|gb|EDT22526.1| signal peptidase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713761|gb|EDT25943.1| signal peptidase I [Clostridium perfringens CPE str. F4969]
 gi|177909000|gb|EDT71482.1| signal peptidase I [Clostridium perfringens D str. JGS1721]
 gi|182379996|gb|EDT77475.1| signal peptidase I [Clostridium perfringens NCTC 8239]
          Length = 176

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 137 DTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRT-GDIVAKVLISRRGRS 192
             + K    SM+P    GD L +      N    GD ++       + + K +I   G  
Sbjct: 34  LFKIKVPTGSMMPTVEIGDQLFVTKIYNPNNIKRGDIVVFNSDELKEPLLKRVIGLPGEH 93

Query: 193 IDLMSL 198
           +++ S 
Sbjct: 94  VEIKSD 99


>gi|331092227|ref|ZP_08341055.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401659|gb|EGG81238.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 154

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I + I    ++ N+T   LA K G+   + +K +  
Sbjct: 6  IGKYISLKRKQKNMTQEQLAEKLGVSNKTISKWETG 41


>gi|331701810|ref|YP_004398769.1| helix-turn-helix domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329129153|gb|AEB73706.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL
          B-30929]
          Length = 125

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + ER  L+   LA+K  +  ++    +        R P+ +++  +    + +
Sbjct: 3  LGQTISSLRERRGLSQVQLAKKLNIGTSTLGMWETD-----KRKPNPDALVSLANYFDVS 57


>gi|329117658|ref|ZP_08246375.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326908063|gb|EGE54977.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 331

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +R+  +   LA K  +   S +K +     G    P    I ++      +
Sbjct: 11 RKRNGWSQEQLAEKLDVSRQSVSKWE-----GAQSVPDLNRIIQMAEIFGVS 57


>gi|310827862|ref|YP_003960219.1| hypothetical protein ELI_2273 [Eubacterium limosum KIST612]
 gi|308739596|gb|ADO37256.1| hypothetical protein ELI_2273 [Eubacterium limosum KIST612]
          Length = 137

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 3/106 (2%)

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDT-RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI 173
             T   PE  +      +   +D      +D SM   Y K DIL +        G   LI
Sbjct: 26  IETPEPPEYTAETLPSKSRNGRDYIMVTLRDHSMFDRYYKDDILNVRLQETCCDGQDALI 85

Query: 174 KPRTGDIVAKVLISRRGRSIDLMSLNCC-YPVDTVEMSDIEWIARI 218
               G +  + +      +I L  LN   Y  +T     I+ +  +
Sbjct: 86  LLENGSVRLRRVC-ITEDTIILKPLNTEFYEEETYPKDTIQILGVV 130


>gi|309792250|ref|ZP_07686722.1| helix-turn-helix domain-containing protein [Oscillochloris
           trichoides DG6]
 gi|308225791|gb|EFO79547.1| helix-turn-helix domain-containing protein [Oscillochloris
           trichoides DG6]
          Length = 181

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 49/174 (28%), Gaps = 16/174 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I R+ +   LT   ++  +GL P+  ++ +R  +       S  ++ K+    +  
Sbjct: 3   LGQKIGRLRQERGLTLQEVSDGSGLTPSFLSRLERDKVN-----ISVANLRKLAQFFSVQ 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
           +    +   S          +   L    +    +    + P  +      +        
Sbjct: 58  MTHFFEGEDSQQAGQVLTVADRVRLSLDDAPVQVY---ALLPPNSDLEARLLEARPGSGQ 114

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVA 182
             ++ +        Q              + +    +N GD L  +        
Sbjct: 115 QGFSGRGSQMVLVLQGQL--------RYTLGDEEYTLNTGDTLFYRDDMAHSWI 160


>gi|257876621|ref|ZP_05656274.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257810787|gb|EEV39607.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 8/85 (9%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I    ++  +T   LA++  +  ++ +  +         +P   ++ ++      ++ +L
Sbjct: 7  IRERRKQLGMTQEELAKELNVSRSAISNWEIGRN-----YPDITTLIELAQMYQVSLDEL 61

Query: 73 LDLPFSDGRTTEKKEKEIPLLYFPP 97
                      +  K+   L    
Sbjct: 62 FYDDIDLVNKFAEDNKKKEQLKKVN 86


>gi|212691942|ref|ZP_03300070.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855]
 gi|212665544|gb|EEB26116.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855]
          Length = 142

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  S + I   I     R  LT   L ++ G+     +K +           + ++I K
Sbjct: 1  MTD-SIENIGLMIRNERLRKGLTQEELGKRIGVGKAQISKIESGKG------LTIKTITK 53

Query: 61 ILAATNET 68
          +L A   +
Sbjct: 54 VLDALGMS 61


>gi|55820198|ref|YP_138640.1| transcriptional regulator, truncated [Streptococcus thermophilus
           LMG 18311]
 gi|55736183|gb|AAV59825.1| transcriptional regulator, putative, truncated [Streptococcus
           thermophilus LMG 18311]
          Length = 87

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 7/85 (8%)

Query: 135 TQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSID 194
             D        SM P Y  G + ++        G  +           K +       + 
Sbjct: 2   AHDFASWVSGDSMEPKYHNGSVTLIRETGFDYDG-AVYAVVCNSQTYIKRVY-LEAEGLR 59

Query: 195 LMSLNCCYPVDTVEMSDIEWIARIL 219
           L      Y    +   +   + RI+
Sbjct: 60  LK-----YKDIFISYDEDPRVVRII 79


>gi|81429329|ref|YP_396330.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78610972|emb|CAI56024.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 106

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  + +   LT   L+++ G+   + +  ++        +PS E++  I +  + +
Sbjct: 7  GERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLS-----YPSLETLVSICSILDTS 60


>gi|49475543|ref|YP_033584.1| hypothetical protein BH07730 [Bartonella henselae str. Houston-1]
 gi|49238349|emb|CAF27573.1| hypothetical protein BH07730 [Bartonella henselae str. Houston-1]
          Length = 82

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 1  MTSFSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          M++   K I + +++  E         LA   G+ P++ ++       G++R  S   + 
Sbjct: 1  MSNDIEKSIQQWLEKKLEERGHGAQIELAAYLGIHPSTISRMLNPYKNGKSRSISIGELV 60

Query: 60 KILAATNETICQ 71
          KI      +  Q
Sbjct: 61 KIAEFFKVSPPQ 72


>gi|15668446|ref|NP_247244.1| repressor protein YorfE [Methanocaldococcus jannaschii DSM 2661]
 gi|1590997|gb|AAB98257.1| repressor protein, putative (yorfE) [Methanocaldococcus
          jannaschii DSM 2661]
          Length = 79

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          + +   +      HNLT   LA+K G+   +    ++   +     PS +  FKI     
Sbjct: 12 ETMKNKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYD-----PSLKLAFKIAKFFG 66

Query: 67 ETICQLLDLPF 77
            I  +     
Sbjct: 67 VKIEDIFIYED 77


>gi|150019804|ref|YP_001312058.1| helix-turn-helix domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906269|gb|ABR37102.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 247

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              I +      +     A+  G+  ++    +        R P TE + KI  A    I
Sbjct: 4   GNNIKKCRLDKGINQKEFAKILGIPVSTLANYENNH-----REPKTEILIKIADALLIPI 58

Query: 70  CQLLDLPFSDGRTT-EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
            +LLD   +   +       ++  +    +     F +    +G   N +
Sbjct: 59  DELLDSETTSFSSNLITSMLQMEHITIVDASEEYGFKAISRDSGVNINYL 108


>gi|332798978|ref|YP_004460477.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332696713|gb|AEE91170.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 85

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +  +     LT   LA + G+ P++    +        R P  +    I       I 
Sbjct: 6  NRLAMLRNSKGLTQRDLANELGVSPSTIAMYEIGE-----RTPGLKMAKIIADFFGVGIE 60

Query: 71 QLLDLPFSDGRTTEKKEKEIP 91
           +     +  +  + ++ +  
Sbjct: 61 YIFFTAGAYEKEAKIRDSQHD 81


>gi|312966689|ref|ZP_07780909.1| HTH-type transcriptional regulator hipB [Escherichia coli
          2362-75]
 gi|312288799|gb|EFR16699.1| HTH-type transcriptional regulator hipB [Escherichia coli
          2362-75]
          Length = 72

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           +++  T S LA+K G+   + +  +           S  + FKIL +   ++
Sbjct: 5  RQQNGWTQSELAKKIGIKQATISNFENN-----PDNTSLTTFFKILQSLELSM 52


>gi|309775025|ref|ZP_07670039.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917210|gb|EFP62936.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 51

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 4/40 (10%), Positives = 17/40 (42%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
           E + ++ +   ++   LA +  +   + +K +    + +
Sbjct: 10 GEKLQKLRKESGISQEELASRLHVSRQAVSKWENEVSQTK 49


>gi|294815898|ref|ZP_06774541.1| Plasmid maintenance system antidote protein, XRE family
          [Streptomyces clavuligerus ATCC 27064]
 gi|294328497|gb|EFG10140.1| Plasmid maintenance system antidote protein, XRE family
          [Streptomyces clavuligerus ATCC 27064]
          Length = 139

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  + E    +   LAR+ G+  ++ ++            P  E   ++     + 
Sbjct: 35 RLRELREASGRSYGALARRVGVSASTLHRYCSGHTVPMEFAP-VERFARLCGCQGDD 90


>gi|293115820|ref|ZP_05793140.2| transcriptional regulator, Cro/CI family [Butyrivibrio crossotus
          DSM 2876]
 gi|292808334|gb|EFF67539.1| transcriptional regulator, Cro/CI family [Butyrivibrio crossotus
          DSM 2876]
          Length = 66

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
          E + ++      +   LAR+ G+   + N+ +    E R    +T
Sbjct: 7  EKVKKVRIEIGYSQEQLARELGVSFATINRWENGKSEPRQLALNT 51


>gi|256841360|ref|ZP_05546867.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737203|gb|EEU50530.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 109

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          ++ EAI +     NLT   L  + G+     ++ +R 
Sbjct: 40 RLGEAIKKARIEQNLTQEQLGERIGVKRAQISRLERG 76


>gi|254520429|ref|ZP_05132485.1| helix-turn-helix domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226914178|gb|EEH99379.1| helix-turn-helix domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 226

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 54/198 (27%), Gaps = 10/198 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I     +  ++   LA+K G+     N+ +      +       S        + 
Sbjct: 3   RVGEKIKEARLKSGMSQKLLAKKLGVAEKFINEIEMGRRVAQESLIDKASKILNADFNDV 62

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV--------G 119
           ++    +    + +     + +                S V       +           
Sbjct: 63  SMVVTDEALIEERKAMSDVKNKSSKGNIEKDEVWTNAFSSVLKNVPILDYSLKNNKGFKE 122

Query: 120 VPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGD 179
           +P   +   G    Q +    + QD  M         L   + ++    + + +    G 
Sbjct: 123 LPIHSNKVEGY--SQDKVLYLEIQDDEMSGFRMLKGDLAFATLVKEVSNNGIFLVEYKGR 180

Query: 180 IVAKVLISRRGRSIDLMS 197
              + + +     + L+S
Sbjct: 181 RAIRQIKNLGNSKVLLVS 198


>gi|239820730|ref|YP_002947915.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805583|gb|ACS22649.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 85

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   +    +   ++   LA + G+  +  +  +           S E +  I      
Sbjct: 10 QLGALLKAARKEAGISQVKLAERLGISQSRMSHMELN-----PGSLSLEQLLAIFGVLGL 64

Query: 68 TI 69
           +
Sbjct: 65 EM 66


>gi|166033570|ref|ZP_02236399.1| hypothetical protein DORFOR_03296 [Dorea formicigenerans ATCC
          27755]
 gi|218280987|ref|ZP_03487577.1| hypothetical protein EUBIFOR_00135 [Eubacterium biforme DSM 3989]
 gi|166026755|gb|EDR45512.1| hypothetical protein DORFOR_03296 [Dorea formicigenerans ATCC
          27755]
 gi|218217758|gb|EEC91296.1| hypothetical protein EUBIFOR_00135 [Eubacterium biforme DSM 3989]
          Length = 100

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I   ID    + N+T   L+ K G+     ++ +        R PS   + K+     
Sbjct: 31 DIIQAMIDA-RVQQNMTQKDLSAKTGITQADISRIENGT-----RNPSLSMVKKLAHGLG 84

Query: 67 E 67
           
Sbjct: 85 M 85


>gi|319426396|gb|ADV54470.1| helix-turn-helix domain protein [Shewanella putrefaciens 200]
 gi|319426403|gb|ADV54477.1| helix-turn-helix domain protein [Shewanella putrefaciens 200]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 2/111 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +       N+    +A + GL   + +K +R   E +        + KIL    + 
Sbjct: 8   IGSVLKDRRIALNIKQEDIAEQLGLTVQTVSKWERDLTEPKASQ--VTQLSKILKIAEKD 65

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           IC               +   I +   P +         +  T    + + 
Sbjct: 66  ICSGEIKHLKMDPLEFVRRVGILMNEVPQTELLIGMHEYINDTEGFIDMLA 116


>gi|118443353|ref|YP_878274.1| transcriptional regulator [Clostridium novyi NT]
 gi|118133809|gb|ABK60853.1| putative transcriptional regulator [Clostridium novyi NT]
          Length = 113

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          +E + ++    N+T   L+   G+  ++ +K +        R    ES+ K+  A N ++
Sbjct: 4  YEKLKQLRISRNITTYELSELTGIPQSTISKMENG-----KRKIEAESLQKLADALNISV 58

Query: 70 CQLLD 74
           +  D
Sbjct: 59 NEFFD 63


>gi|116255759|ref|YP_771592.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260407|emb|CAK03511.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 47/177 (26%), Gaps = 22/177 (12%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   +    ++  +T + LA   G+     +K +   I      PS  ++  +  A    
Sbjct: 56  IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNI-----SPSLTTLQSLSRALGVP 110

Query: 69  ICQLLDLPFSDG--------------RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +                         R   +   +  +L    + + G        T   
Sbjct: 111 LTAFFRRFEEPRNAVFVKAGQGIELERRGTRAGHQYNVLGHIDNNTSGVIVEPYLITLTT 170

Query: 115 WNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            + +           +Y ++ +          +  + + GD L  ++         +
Sbjct: 171 DSDIFPTFQHEGMEFLYMLEGE--VVYRHGDQLFQM-QPGDSLFFDADAPHGPEQLV 224


>gi|148260500|ref|YP_001234627.1| hypothetical protein Acry_1500 [Acidiphilium cryptum JF-5]
 gi|146402181|gb|ABQ30708.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5]
          Length = 469

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 5/102 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S   I   + R+ +   LT   LA + G+  +  N  +        R  +   + K+  
Sbjct: 1   MSKPLIGRIVRRLRQEQGLTQQKLASRLGISTSYLNLIEHDQ-----RGVTAALLIKLTE 55

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
                +  L            ++    PL+            
Sbjct: 56  TLKVDLAALSGSDERQVEQALREAFADPLIGTESVPDSEAQM 97


>gi|322374490|ref|ZP_08049004.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300]
 gi|321279990|gb|EFX57029.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300]
          Length = 96

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 6/73 (8%), Positives = 23/73 (31%), Gaps = 10/73 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M         + +    E++  + + +A   G    + +  +            + S+ +
Sbjct: 1  MQML-----GKQLKLFREQNGYSQNQIAEYLGTTRQTISNWENDKTI-----IDSHSLIR 50

Query: 61 ILAATNETICQLL 73
          +      ++ +L 
Sbjct: 51 LADFYQISLDELC 63


>gi|296393892|ref|YP_003658776.1| XRE family transcriptional regulator [Segniliparus rotundus DSM
           44985]
 gi|296181039|gb|ADG97945.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM
           44985]
          Length = 178

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            + E I    E   ++   LA++AG+     ++ +R       R PS + + +I  A   
Sbjct: 16  DVGEYIRTQRELAQVSLRQLAQRAGVSNPYLSQIERG-----LRNPSAQVMGQIAKALRL 70

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNK 114
           +   +       G            + +    SGG   S        
Sbjct: 71  SAQAIDTQAEVLGPCQGFTPASEVRVQWGARESGGQNASAPVRADRG 117


>gi|289178728|gb|ADC85974.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 348

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +   HN+T   LA   G+   S +K +         +P  + +  +      ++ 
Sbjct: 18  DNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKA-----YPEMDKLLMLCDMFGVSLD 72

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            L+     +G        E  L   P     G       
Sbjct: 73  DLVMGDVRNGIAMSANHVEDGLPKAPMPEMEGSALPQDI 111


>gi|283834661|ref|ZP_06354402.1| hypothetical protein CIT292_08868 [Citrobacter youngae ATCC 29220]
 gi|291069576|gb|EFE07685.1| toxin-antitoxin system, antitoxin component, Xre family
           [Citrobacter youngae ATCC 29220]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 13/139 (9%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI------- 61
           I +++ R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +       
Sbjct: 8   IAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVALDIP 62

Query: 62  -LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                     +   +   +G     ++     +       G   D  +  T    + +  
Sbjct: 63  FARLLEPQEQKTQVIRRGEGTKVVAEQAHYQAILLAACPPGARRDIYLLLTQPGADRISH 122

Query: 121 PEIRSPHNGIYAIQTQDTR 139
           P        I   Q +   
Sbjct: 123 PHPPGSVEHIIVTQGKAMV 141


>gi|256848433|ref|ZP_05553875.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
 gi|256714700|gb|EEU29679.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
          Length = 211

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I    ++  LT S +A+K  +   + +  ++        +P   ++ +I      +
Sbjct: 7  IKMRRKKRGLTQSVVAKKLYVTRQTISNWEQGKS-----YPDLNTLVRISDFYQIS 57


>gi|297564957|ref|YP_003683929.1| XRE family transcriptional regulator [Meiothermus silvanus DSM
           9946]
 gi|296849406|gb|ADH62421.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM
           9946]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 46/162 (28%), Gaps = 11/162 (6%)

Query: 10  WEAI-DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           W  +     E+  L+   LA  AG+ P+   K +R   +   R  S   +  +L A +  
Sbjct: 26  WARLLVARREKLGLSREALALAAGISPSLIAKLERGTHD--IRDMSVGRLQALLRALHLP 83

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              LL      G             Y   + +         P  +  +T  +P       
Sbjct: 84  SLDLLLGGSEGGDFPSTPGLTPLPYYPALAPACVG---EEAPGRSHLDTRLLPTRPGYAG 140

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
              A    D        S      +G +L++        G  
Sbjct: 141 FFLATLEGDAL-----CSEDLPLAEGSLLVVERKPARERGMV 177


>gi|199599583|ref|ZP_03212967.1| putative transcriptional regulator [Lactobacillus rhamnosus
          HN001]
 gi|199589527|gb|EDY97649.1| putative transcriptional regulator [Lactobacillus rhamnosus
          HN001]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 17 AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           ER  LT   LA +A +  ++  + +           S +++ KI  A  
Sbjct: 41 RERAGLTQRELAERADVPQSTIARIEHGQNT------SFDTMSKIAFALG 84


>gi|183601514|ref|ZP_02962884.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683947|ref|YP_002470330.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190987|ref|YP_002968381.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196393|ref|YP_002969948.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219120|gb|EDT89761.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621597|gb|ACL29754.1| predicted transcriptional regulator [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249379|gb|ACS46319.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250947|gb|ACS47886.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793976|gb|ADG33511.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 335

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           + +  +   HN+T   LA   G+   S +K +         +P  + +  +      ++ 
Sbjct: 5   DNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKA-----YPEMDKLLMLCDMFGVSLD 59

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVF 109
            L+     +G        E  L   P     G       
Sbjct: 60  DLVMGDVRNGIAMSANHVEDGLPKAPMPEMEGSALPQDI 98


>gi|163746251|ref|ZP_02153609.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45]
 gi|161380136|gb|EDQ04547.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +  N T    AR+AGL  ++ +K +   +      P+ +++ K+      
Sbjct: 26 DLGARVRELRKARNWTLEQAARQAGLARSTLSKIENGLM-----SPTYDALKKLAVGLEI 80

Query: 68 TICQLLDLP 76
          T+ QL   P
Sbjct: 81 TVPQLFTPP 89


>gi|50123201|ref|YP_052368.1| putative phage regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|50123210|ref|YP_052377.1| putative phage regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49613727|emb|CAG77178.1| putative phage regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49613736|emb|CAG77187.1| putative phage regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 132

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + E  NL+   LA   G+DP  +N+ ++         P  E++  I      ++ 
Sbjct: 18 ERLRLLREARNLSQVRLAELLGVDPRVYNRWEKGVS-----APHLETVVNIADVLQVSMD 72

Query: 71 Q 71
          +
Sbjct: 73 E 73


>gi|84516199|ref|ZP_01003559.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53]
 gi|84509895|gb|EAQ06352.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +   +  + +  + T    AR+AGL  ++ +K +   +      P+ +++ K+    + 
Sbjct: 26 DLGARVRELRKARDWTLEQAARQAGLARSTLSKIENGQM-----SPTYDALKKLAVGLDI 80

Query: 68 TICQLLDLP 76
          ++ QL   P
Sbjct: 81 SVPQLFTPP 89


>gi|46907497|ref|YP_013886.1| signal peptidase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093918|ref|ZP_00231657.1| signal peptidase I [Listeria monocytogenes str. 4b H7858]
 gi|226223873|ref|YP_002757980.1| signal peptidase I [Listeria monocytogenes Clip81459]
 gi|254824669|ref|ZP_05229670.1| signal peptidase I [Listeria monocytogenes FSL J1-194]
 gi|254932413|ref|ZP_05265772.1| signal peptidase I [Listeria monocytogenes HPB2262]
 gi|254993489|ref|ZP_05275679.1| signal peptidase I [Listeria monocytogenes FSL J2-064]
 gi|255520252|ref|ZP_05387489.1| signal peptidase I [Listeria monocytogenes FSL J1-175]
 gi|46880765|gb|AAT04063.1| signal peptidase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017704|gb|EAL08498.1| signal peptidase I [Listeria monocytogenes str. 4b H7858]
 gi|225876335|emb|CAS05044.1| Putative signal peptidase I [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|293583970|gb|EFF96002.1| signal peptidase I [Listeria monocytogenes HPB2262]
 gi|293593908|gb|EFG01669.1| signal peptidase I [Listeria monocytogenes FSL J1-194]
 gi|328468560|gb|EGF39560.1| signal peptidase I [Listeria monocytogenes 1816]
 gi|332311715|gb|EGJ24810.1| Signal peptidase I [Listeria monocytogenes str. Scott A]
          Length = 189

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLI----KPRTGDIVAKVLISRRGRSI 193
            K + TSM+P Y+ GD + +    + +  D ++        +G+   K +I   G  I
Sbjct: 43  VKVEGTSMVPTYQDGDRIFIEKISKPDRFDIIVFDEPPMIGSGEHFIKRVIGLPGDKI 100


>gi|331001960|ref|ZP_08325480.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411756|gb|EGG91161.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 73

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 13/39 (33%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          +       +L+   LA   G+   + N  ++       R
Sbjct: 6  LKSARAAKDLSQQQLAEIVGVSRQTINAIEKGDYNPTIR 44


>gi|329116195|ref|ZP_08244912.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD
           2020]
 gi|326906600|gb|EGE53514.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD
           2020]
          Length = 128

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/111 (10%), Positives = 31/111 (27%), Gaps = 6/111 (5%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + ++ +  + +   LA K  +   + +K +R  +      P    I +I      T  + 
Sbjct: 9   LVKLRKEKHFSQDELAEKLFISRQAISKWERGEVT-----PDLAKIEQIGEVFGVTT-EF 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEI 123
           L    +   T   +  +                  +      +  +  P  
Sbjct: 63  LLFGKNFEDTWGVESFKYEEFQNIADEKKEERFDKLLDLFRSYWWLLFPFS 113


>gi|295400956|ref|ZP_06810931.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294976958|gb|EFG52561.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 139

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     +K+ E +  + ++HN T   LA+   +  +  +K +   +      P  +S+ K
Sbjct: 1  MKKM--RKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGEL-----LPDVQSLEK 53

Query: 61 ILAATNET 68
          +      +
Sbjct: 54 LSNLYEVS 61


>gi|291617399|ref|YP_003520141.1| YdcN [Pantoea ananatis LMG 20103]
 gi|291152429|gb|ADD77013.1| YdcN [Pantoea ananatis LMG 20103]
          Length = 181

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 31/98 (31%), Gaps = 5/98 (5%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           H+ + + + ++ + +  + S  A K G+      + +R         P+  +++KI    
Sbjct: 5   HQYLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGES-----SPTVATLWKIATGF 59

Query: 66  NETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
           N      +              ++   +   P      
Sbjct: 60  NVPFSFFVHSGVHPAGEVTCYRQQNAQMAVTPLLPYDA 97


>gi|289596395|ref|YP_003483091.1| transcriptional regulator, XRE family [Aciduliprofundum boonei
           T469]
 gi|289534182|gb|ADD08529.1| transcriptional regulator, XRE family [Aciduliprofundum boonei
           T469]
          Length = 224

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 18/186 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + +  E   ++   LAR  G+  +  +  +     GR + P   ++ K + A  E  
Sbjct: 18  GATMRKWREMFGISQQELARYLGMSSSVISDYE----SGRRKSPGVGTVRKFVNALIEID 73

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                       +T  +E  + +  FP   S   F   +       N          +  
Sbjct: 74  EAKGGEKVKQLSSTYGEEAILDMGEFPYQISVEDFMDLIDA--KITNEGEFKRQIYGYTI 131

Query: 130 IYAIQTQDT-----RHKTQDTSMLPL------YRKGDILILNSAIQVNCGDRLLIKPRT- 177
           + +++           +    S+         Y     ++   A  +     + + PR  
Sbjct: 132 LDSLKAILHYSSFDYLRVYGWSIDRALIFTGVYYGRSPMVAIRAHPLKPSAVVYVSPRKV 191

Query: 178 GDIVAK 183
            ++  K
Sbjct: 192 DELAIK 197


>gi|270299969|gb|ACZ68775.1| hypothetical protein SAP073A_008 [Staphylococcus aureus]
          Length = 72

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          K+ EAI    E    +   LA    +   S +K +         +PS + +  +      
Sbjct: 2  KLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKN-----YPSLDILIAMSDLFGI 56

Query: 68 T 68
          +
Sbjct: 57 S 57


>gi|229495100|ref|ZP_04388846.1| DNA-binding protein [Rhodococcus erythropolis SK121]
 gi|229318031|gb|EEN83906.1| DNA-binding protein [Rhodococcus erythropolis SK121]
          Length = 196

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 39/147 (26%), Gaps = 8/147 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
             +     R  LT  GLA + GL  +  +K +R         PS     KI    +  + 
Sbjct: 3   AFLRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGIST-----PSIAVALKIARVLDADVG 57

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGI 130
           QL     S         +    +  P +         + P+             +   G 
Sbjct: 58  QLF--SDSMEGNAMTIVRAKDRVIDPANSVQSSVYDPIAPSLVGKAMQPFVVHPASVMGP 115

Query: 131 -YAIQTQDTRHKTQDTSMLPLYRKGDI 156
            +   T +        S+        +
Sbjct: 116 KFMDHTGEEFVFVHSGSVEFEIPGQTM 142


>gi|228925015|ref|ZP_04088145.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228834678|gb|EEM80187.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 65

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  + +   ++   LA K GL  T  ++ +        + P+ +   KI      +
Sbjct: 4  IAELRKEKLISQEKLAAKVGLSRTYISEIENN-----KKQPNVKLAIKIAKVLGTS 54


>gi|228956421|ref|ZP_04118232.1| Transcription regulator [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228803254|gb|EEM50062.1| Transcription regulator [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
          Length = 114

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I   I ++ ++ N T   L +K G         +        R+PS ++I K+     
Sbjct: 3  IGARIKKLRKQRNWTQEILGKKVGASSRVIGYYES-----EERFPSPDTIAKLSDTLE 55


>gi|228937919|ref|ZP_04100546.1| Transcription regulator [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228962246|ref|ZP_04123679.1| Transcription regulator [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228970800|ref|ZP_04131440.1| Transcription regulator [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228977375|ref|ZP_04137770.1| Transcription regulator [Bacillus thuringiensis Bt407]
 gi|228782352|gb|EEM30535.1| Transcription regulator [Bacillus thuringiensis Bt407]
 gi|228788925|gb|EEM36864.1| Transcription regulator [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228797415|gb|EEM44595.1| Transcription regulator [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228821710|gb|EEM67711.1| Transcription regulator [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|326938399|gb|AEA14295.1| transcriptional regulator [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 114

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          I   I ++ ++ N T   L +K G         +        R+PS ++I K+     
Sbjct: 3  IGARIKKLRKQRNWTQEILGKKVGASSRVIGYYES-----EERFPSPDTIAKLSDTLE 55


>gi|257386107|ref|YP_003175880.1| XRE family transcriptional regulator [Halomicrobium mukohataei
          DSM 12286]
 gi|257168414|gb|ACV46173.1| transcriptional regulator, XRE family [Halomicrobium mukohataei
          DSM 12286]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 20/53 (37%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +       +LT S +A   G+  ++ +K     +E   R    + +  ++   
Sbjct: 20 LAEALRERDLTQSEVAELLGISQSAVSKYAHGEVERNERLLENDRLAALIEEL 72


>gi|255658327|ref|ZP_05403736.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
 gi|260849650|gb|EEX69657.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
          Length = 65

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + +  +  +++   +AR+     T+  + +        R P  E++ +   A    
Sbjct: 4  ILEQLIQRRKELHISQKEVARRMKTGQTTIARIETGA-----RSPKLETVERFAQALGCD 58


>gi|210621225|ref|ZP_03292531.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM
          13275]
 gi|210154836|gb|EEA85842.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM
          13275]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +  + +   L+   L  + G+   + +K +         +P  + +  +    N ++ 
Sbjct: 5  EKLIELRKAKGLSQEELGNELGVSRQTISKWELGQS-----YPDFQKLVLLSDFFNISLD 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +L+     D      +  E     +  
Sbjct: 60 KLIKDIDLDDVRENNQSDEKVSKMYED 86


>gi|197118213|ref|YP_002138640.1| XRE family helix-turn-helix transcriptional regulator [Geobacter
          bemidjiensis Bem]
 gi|197087573|gb|ACH38844.1| helix-turn-helix transcriptional regulator, XRE family [Geobacter
          bemidjiensis Bem]
          Length = 103

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 7  KKIWEAIDRM---AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +  + A+D +    +   LT   +A K G+   S  + +          PS E + K  A
Sbjct: 31 EDEFAALDVLLKARKAAGLTQEQVAAKMGVSQPSLARVEASLCS-HRHSPSLEMLRKYAA 89

Query: 64 ATNE 67
          A N 
Sbjct: 90 AVNC 93


>gi|256005740|ref|ZP_05430695.1| signal peptidase I [Clostridium thermocellum DSM 2360]
 gi|281417070|ref|ZP_06248090.1| signal peptidase I [Clostridium thermocellum JW20]
 gi|255990313|gb|EEU00440.1| signal peptidase I [Clostridium thermocellum DSM 2360]
 gi|281408472|gb|EFB38730.1| signal peptidase I [Clostridium thermocellum JW20]
 gi|316940892|gb|ADU74926.1| signal peptidase I [Clostridium thermocellum DSM 1313]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 141 KTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGD--IVAKVLISRRGRSID 194
                SM      GD +I +       +   GD ++ +    +  +  K +I     +++
Sbjct: 51  YVPTGSMENTIMPGDRIIASRIHYYFSEPKRGDIVVFRYPDNEEVLYVKRIIGLPNETVE 110

Query: 195 LM 196
           + 
Sbjct: 111 IK 112


>gi|183597719|ref|ZP_02959212.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC
          25827]
 gi|188022996|gb|EDU61036.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC
          25827]
          Length = 93

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
            I   +     R  LT S LA+K  +     ++ +     
Sbjct: 11 NNIGRMLKSYRRRTGLTGSELAKKINVSQQQISRYENGINN 51


>gi|153816351|ref|ZP_01969019.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756]
 gi|317501012|ref|ZP_07959220.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089033|ref|ZP_08337939.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846312|gb|EDK23230.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756]
 gi|316897590|gb|EFV19653.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330406233|gb|EGG85752.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 255

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 8/137 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E I ++ E   ++    A+   +   + +  ++        +P  +++ KI   +  
Sbjct: 2   KIGETILKLREEKKMSQEEFAQYYHVTRQTISNWEKEKN-----YPDLQTLVKISDESGV 56

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPL--LYFPPSGSGGFFDSGVFPTGNK-WNTVGVPEIR 124
            +  +L   FS  +  +KK + + +  +      +     S      N   + +      
Sbjct: 57  PLDSMLKDNFSMVQEIDKKVRHLKIFKIGTIVVLAIVILVSAYIGIQNGKQDHLVRTYED 116

Query: 125 SPHNGIYAIQTQDTRHK 141
                 +  +  +    
Sbjct: 117 KLEELGFEQEGNNYCLT 133


>gi|150021356|ref|YP_001306710.1| XRE family transcriptional regulator [Thermosipho melanesiensis
          BI429]
 gi|149793877|gb|ABR31325.1| transcriptional regulator, XRE family [Thermosipho melanesiensis
          BI429]
          Length = 72

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  + E+  LT   LA+  G+   + +  +    +     PS +   ++  A   ++  +
Sbjct: 3  LRELREKKMLTQQQLAKLIGVTQRTISAYEIGQAK-----PSLDVAIRLAKALGVSVEDV 57

Query: 73 L 73
           
Sbjct: 58 F 58


>gi|147673117|ref|YP_001218249.1| hypothetical protein VC0395_A2349 [Vibrio cholerae O395]
 gi|262166988|ref|ZP_06034706.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27]
 gi|146315000|gb|ABQ19539.1| conserved domain protein [Vibrio cholerae O395]
 gi|227011827|gb|ACP08037.1| hypothetical protein VC395_0008 [Vibrio cholerae O395]
 gi|262024572|gb|EEY43255.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27]
          Length = 69

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I +M +   LT   LA  A +D +   + +R  +       + E +++I       
Sbjct: 9  VGKRIAKMRKSKGLTQDKLALLAEIDRSYVGRIERGEVN-----ITVEKLYQIADTLGCD 63

Query: 69 ICQ 71
          + +
Sbjct: 64 VKE 66


>gi|125972871|ref|YP_001036781.1| signal peptidase I [Clostridium thermocellum ATCC 27405]
 gi|125713096|gb|ABN51588.1| signal peptidase I, Serine peptidase, MEROPS family S26A
           [Clostridium thermocellum ATCC 27405]
          Length = 193

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 141 KTQDTSMLPLYRKGDILILNSAI----QVNCGDRLLIKPRTGD--IVAKVLISRRGRSID 194
                SM      GD +I +       +   GD ++ +    +  +  K +I     +++
Sbjct: 56  YVPTGSMENTIMPGDRIIASRIHYYFSEPKRGDIVVFRYPDNEEVLYVKRIIGLPNETVE 115

Query: 195 LM 196
           + 
Sbjct: 116 IK 117


>gi|333026159|ref|ZP_08454223.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|332746011|gb|EGJ76452.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 400

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
           I R+ +  +LT   LA  AGL  ++  K+++  I     
Sbjct: 18 RIKRLRQERHLTQKALADLAGLSYSTVTKTEKALIPLTPH 57


>gi|318061994|ref|ZP_07980715.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG]
 gi|318080087|ref|ZP_07987419.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 400

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
           I R+ +  +LT   LA  AGL  ++  K+++  I     
Sbjct: 18 RIKRLRQERHLTQKALADLAGLSYSTVTKTEKALIPLTPH 57


>gi|315033825|gb|EFT45757.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0017]
          Length = 65

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
          +    E    T    A+K G+  T+++  ++       R P+ ++  K+    N + 
Sbjct: 8  LKIKREELGYTQESFAKKVGIAKTTYSSYEQGH-----RNPTVQTAKKMAKILNVSW 59


>gi|307285420|ref|ZP_07565559.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306502644|gb|EFM71909.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|315162230|gb|EFU06247.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315573911|gb|EFU86102.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
 gi|315580395|gb|EFU92586.1| helix-turn-helix protein [Enterococcus faecalis TX0309A]
          Length = 75

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  +     +T   LA+K G+   +    +        R     ++ KI  A   T+  +
Sbjct: 6  IYDLRREKRMTQKELAKKTGITERTIINYEN--SIDALRNAKYSTVEKIATALGVTVDDI 63

Query: 73 L 73
           
Sbjct: 64 F 64


>gi|253773505|ref|YP_003036336.1| XRE family transcriptional regulator [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161582|ref|YP_003044690.1| phage N15 gp48-like protein [Escherichia coli B str. REL606]
 gi|300917792|ref|ZP_07134436.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 115-1]
 gi|300929017|ref|ZP_07144514.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 187-1]
 gi|242377274|emb|CAQ32015.1| ybl67 [Escherichia coli BL21(DE3)]
 gi|253324549|gb|ACT29151.1| transcriptional regulator, XRE family [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973483|gb|ACT39154.1| phage N15 gp48-like protein [Escherichia coli B str. REL606]
 gi|253977694|gb|ACT43364.1| phage N15 gp48-like protein [Escherichia coli BL21(DE3)]
 gi|300414980|gb|EFJ98290.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 115-1]
 gi|300463006|gb|EFK26499.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 187-1]
 gi|323937357|gb|EGB33635.1| helix-turn-helix protein [Escherichia coli E1520]
 gi|323962302|gb|EGB57891.1| helix-turn-helix protein [Escherichia coli H489]
 gi|323973719|gb|EGB68894.1| helix-turn-helix protein [Escherichia coli TA007]
          Length = 94

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
            +++   +  M +R  LT + +A + G+   + ++ +R          S  ++ +  AA
Sbjct: 30 QEEELRAVLIEMKKRAGLTSTEIAARMGVSQPAVSRLERNVSSA-----SLTTLQRYAAA 84

Query: 65 TNET 68
              
Sbjct: 85 CGMH 88


>gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
 gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
          Length = 169

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 15/38 (39%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          E I  + +   L+   LA +  +   + +K ++     
Sbjct: 4  ENIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVP 41


>gi|218233356|ref|YP_002365796.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264]
 gi|218161313|gb|ACK61305.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264]
          Length = 149

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K++    +
Sbjct: 60 ELLRSDEELTQKVIEDSKQLAYPKW 84


>gi|166032548|ref|ZP_02235377.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC
          27755]
 gi|166026905|gb|EDR45662.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC
          27755]
          Length = 150

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + I +  E  NLT   LA K  +   +  + +       +R P   +  K+    + ++ 
Sbjct: 5  DNIKKFREEKNLTQQQLADKLYVSRQTVCRWENG-----SRCPDLITAKKLALELDVSMD 59

Query: 71 Q 71
          +
Sbjct: 60 E 60


>gi|119489478|ref|ZP_01622239.1| hypothetical protein L8106_27891 [Lyngbya sp. PCC 8106]
 gi|119454557|gb|EAW35704.1| hypothetical protein L8106_27891 [Lyngbya sp. PCC 8106]
          Length = 76

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          I  + +R  L+   L  K G+   + N  +    +   
Sbjct: 12 IRTLRQRLGLSQRKLGEKLGVVFQTVNNWENGRTKPTR 49


>gi|170735407|ref|YP_001774521.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|169821445|gb|ACA96026.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 81

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 13/77 (16%)

Query: 1  MTSFSHKK--------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
          M   S K+        I   +        ++   LA   G+D +   + +R       R 
Sbjct: 1  MQRVSGKRDDAGHLAAIGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQ-----RN 55

Query: 53 PSTESIFKILAATNETI 69
           +  ++ +I  A N + 
Sbjct: 56 LTILNLIRIADALNISP 72


>gi|295699461|ref|YP_003607354.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438674|gb|ADG17843.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 189

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 15/145 (10%)

Query: 1   MTSFSHKKIWEAIDRM----AERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTE 56
           M+  S   + +AI        E  N + + LA ++G+     +K +R         P+  
Sbjct: 1   MSETSAIDLTQAISARVKTEREARNWSLAELAERSGVSKAMISKIERGEA-----SPTAT 55

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            + ++  A   T+  LL L    G    +   +          +         PTG    
Sbjct: 56  VLGRLSGAFGLTLSTLLALAEQTGERLVRHADQSLWEDPETGYTRRRISP---PTGGVLE 112

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHK 141
            + +     P        +     +
Sbjct: 113 LLEIE---LPIGVRVPYPSDAFVFQ 134


>gi|257065284|ref|YP_003144956.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792937|gb|ACV23607.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 200

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  + +  +LT   LA    +  T+ +K +         +PS +S+ ++    + TI
Sbjct: 4  GEKLQELRKARSLTQEQLAEALYVSRTAVSKWESGRG-----YPSIDSLKEVSRFFSVTI 58

Query: 70 CQLLDLPF 77
           +L+    
Sbjct: 59 DELISPDE 66


>gi|238854642|ref|ZP_04644972.1| signal peptidase I [Lactobacillus jensenii 269-3]
 gi|260664415|ref|ZP_05865267.1| signal peptidase I [Lactobacillus jensenii SJ-7A-US]
 gi|282932967|ref|ZP_06338364.1| signal peptidase I [Lactobacillus jensenii 208-1]
 gi|238832432|gb|EEQ24739.1| signal peptidase I [Lactobacillus jensenii 269-3]
 gi|260561480|gb|EEX27452.1| signal peptidase I [Lactobacillus jensenii SJ-7A-US]
 gi|281303002|gb|EFA95207.1| signal peptidase I [Lactobacillus jensenii 208-1]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSID 194
                SM P +  GD +I      +  GD +++      G +  K ++   G SI 
Sbjct: 45  TVSGPSMQPTFENGDRIIAVRHTSLKRGDIVILNAPDEPGALYIKRIVGMPGDSIT 100


>gi|218752098|ref|ZP_03530894.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
          Length = 93

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 24/92 (26%), Gaps = 5/92 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   + ++      + + LA+   + P+  N+ +        R  +   + +I       
Sbjct: 6   VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDV-----RPLTVAVLLRITEVFGVD 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGS 100
                    +      ++      L       
Sbjct: 61  ATFFASQDDTRLVAELREVTLDRDLDIAIDPH 92


>gi|218532713|ref|YP_002423529.1| XRE family transcriptional regulator [Methylobacterium
          chloromethanicum CM4]
 gi|218525016|gb|ACK85601.1| transcriptional regulator, XRE family [Methylobacterium
          chloromethanicum CM4]
          Length = 135

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + E I  + +   ++ + L    G+      K +           S   + ++L     T
Sbjct: 18 VGERIKVLRKSKGISQTALGSALGVTFQQIQKYENGVNRVGASRLS--EVARVLEVPVST 75

Query: 69 ICQ 71
            +
Sbjct: 76 FFE 78


>gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 126

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 5/105 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            S  +I  AI R     +L+   LA +  +      + +    +      + E+I  +  
Sbjct: 7   MSSSEIGAAIRRRRHELSLSQEELAARLEVSYQQIQRYESGKNK-----LNVENIQLVAD 61

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
           A +  +     +   +       E+  P      +      D  +
Sbjct: 62  ALSVPVGYFFQVVHQETVIESTIEQPCPKEQELLAQFRSIRDDQM 106


>gi|53748387|emb|CAH58723.1| hypothetical protein [Clostridium sp. RKD]
          Length = 114

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I E I R+ +   +T   LA   G+   + +K +    
Sbjct: 6  IGEVIYRLRKEKAITQEQLANFIGISTAAVSKWESGTS 43


>gi|85715308|ref|ZP_01046291.1| transcriptional regulator, XRE family protein [Nitrobacter sp.
          Nb-311A]
 gi|85697954|gb|EAQ35828.1| transcriptional regulator, XRE family protein [Nitrobacter sp.
          Nb-311A]
          Length = 483

 Score = 42.4 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +     R+ ++  L+ + LA   G+ P+  N  +R       R  + + + ++  A +  
Sbjct: 11 VGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQ-----RPVTAQILLRLAEAYDLD 65

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPL 92
          +  L             +    PL
Sbjct: 66 LRDLATADEDRFFAELNEVFSDPL 89


>gi|331090732|ref|ZP_08339579.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330399840|gb|EGG79499.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 150

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + I +  E  NLT   LA K  +   +  + +       +R P   +  K+    + ++ 
Sbjct: 5  DNIKKFREEKNLTQQQLADKLYVSRQTICRWENG-----SRCPDLITAKKLALELDVSMD 59

Query: 71 Q 71
          +
Sbjct: 60 E 60


>gi|325569676|ref|ZP_08145723.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755]
 gi|325157232|gb|EGC69397.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E I R  +   +T   LA    +   S +K +         +P   S+  + A  + +
Sbjct: 5  IGEEIARRRKHRGVTQQELAAFMNVSKASVSKWETGQT-----YPDITSLPLLAAYFDCS 59

Query: 69 ICQ 71
          + +
Sbjct: 60 VDE 62


>gi|325289095|ref|YP_004265276.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964496|gb|ADY55275.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 272

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 26/103 (25%), Gaps = 2/103 (1%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + I +  +    T   LA+K      + +K +               +   L     +
Sbjct: 4   LVQNISKYRKMRGFTQEELAQKLNRSSQAISKWETGQSSPDISL--LPDLAFALGTDINS 61

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPT 111
           +   +          ++  +E       PS           P 
Sbjct: 62  LMGYVYDKKKITIYEDEYRQEDYYWGLKPSPMCYRVMEMAPPV 104


>gi|323693566|ref|ZP_08107769.1| DNA-binding protein [Clostridium symbiosum WAL-14673]
 gi|323502374|gb|EGB18233.1| DNA-binding protein [Clostridium symbiosum WAL-14673]
          Length = 250

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 5/38 (13%), Positives = 14/38 (36%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          E +  + ++   +   L  K G+   + +K +      
Sbjct: 5  EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTP 42


>gi|323485059|ref|ZP_08090412.1| DNA-binding protein [Clostridium symbiosum WAL-14163]
 gi|323401615|gb|EGA93960.1| DNA-binding protein [Clostridium symbiosum WAL-14163]
          Length = 250

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 5/38 (13%), Positives = 14/38 (36%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          E +  + ++   +   L  K G+   + +K +      
Sbjct: 5  EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTP 42


>gi|296119241|ref|ZP_06837810.1| transcriptional regulator, Cro/CI family [Corynebacterium
          ammoniagenes DSM 20306]
 gi|295967762|gb|EFG81018.1| transcriptional regulator, Cro/CI family [Corynebacterium
          ammoniagenes DSM 20306]
          Length = 72

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 5/55 (9%), Positives = 15/55 (27%), Gaps = 2/55 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            +    ++  L+   LA   G+   +    ++   +     P    +       
Sbjct: 3  NNLKAFRDKAGLSQQKLADALGVSRQTIISIEKGRYD--PSLPLAFQLAAKFECL 55


>gi|284031267|ref|YP_003381198.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283810560|gb|ADB32399.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 397

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          + E I    +R  ++   LA   G+  +  ++ +R    G +R  +   +  +L 
Sbjct: 3  VGERIGAYRKRRGMSQDALAGLIGMSRSWLSQVERGIR-GVDRLSTLNDLATVLR 56


>gi|258541456|ref|YP_003186889.1| XRE family transcriptional regulator [Acetobacter pasteurianus
          IFO 3283-01]
 gi|256632534|dbj|BAH98509.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO
          3283-01]
 gi|256635591|dbj|BAI01560.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO
          3283-03]
 gi|256638646|dbj|BAI04608.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO
          3283-07]
 gi|256641700|dbj|BAI07655.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO
          3283-22]
 gi|256644755|dbj|BAI10703.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO
          3283-26]
 gi|256647810|dbj|BAI13751.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO
          3283-32]
 gi|256650863|dbj|BAI16797.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO
          3283-01-42C]
 gi|256653854|dbj|BAI19781.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO
          3283-12]
          Length = 471

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             + ++ +R  LT + LA    + P+  N+ +R       R      + K+    + T 
Sbjct: 11 GPRLRQLRQRETLTQANLADMLDISPSYLNQLERNH-----RPVPHPLLQKLCERFDLTP 65

Query: 70 CQLLDLPFSDGRTTEKKEKEIPL 92
              +   +      ++    P+
Sbjct: 66 AWFSNTKEAHTVQAMRETMADPV 88


>gi|242239429|ref|YP_002987610.1| XRE family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242131486|gb|ACS85788.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703]
          Length = 131

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          ++ + I  + +   LT   LA+   +   +    +     
Sbjct: 15 ELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRR 54


>gi|213028985|ref|ZP_03343432.1| hypothetical protein Salmonelentericaenterica_45075 [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 89

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I  ++ R  ++  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A 
Sbjct: 30 IARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVAL 81


>gi|126730936|ref|ZP_01746745.1| DNA-binding protein, putative [Sagittula stellata E-37]
 gi|126708652|gb|EBA07709.1| DNA-binding protein, putative [Sagittula stellata E-37]
          Length = 130

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +    E   ++   LA+  G+  T+  + +    E   R      +  IL  +   
Sbjct: 14 LGDRLAAAREAQGMSQETLAKNLGIKLTTLERWEDDLSE--PRANKLSMVAGILNVSMVW 71


>gi|91710591|gb|ABE50519.1| N-acetylglutamate synthase / N-acetylglutamate kinase
           [Methylobacillus flagellatus KT]
          Length = 521

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 5/132 (3%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +  AI +  +  N+T   LARK   +  + ++ +R       +  S   + K+  A + T
Sbjct: 3   LGNAIRKRRKALNMTLQELARKVNANSGNLSRIERGA-----QGVSETMLRKLCTALDCT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L     ++   +    +                   +   G +   +          
Sbjct: 58  AAYLYAQSDAESGHSTNTSRLTLHQPQEFVRWFRSAAPYIHAFGGRTFVIAFGGEVVDDG 117

Query: 129 GIYAIQTQDTRH 140
              A+       
Sbjct: 118 QFVALSHDLNLL 129


>gi|28210772|ref|NP_781716.1| DNA-binding protein [Clostridium tetani E88]
 gi|28203210|gb|AAO35653.1| DNA-binding protein [Clostridium tetani E88]
          Length = 150

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E I+++ +    T   L+ K+G+   + +K          + P  E++  +      T+
Sbjct: 6  LEIIEKLKKEKGFTSKQLSEKSGVPKGTLDKILNGTT----KDPKLETLKSLSRVLGCTL 61

Query: 70 CQLLDLPFSDGRT 82
              D   ++   
Sbjct: 62 DDFDDKTETEMEN 74


>gi|83953755|ref|ZP_00962476.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841700|gb|EAP80869.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1]
          Length = 236

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +  N T    A +AGL  ++ +K +   +      P+ E++ K+      
Sbjct: 55  DLGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQM-----SPTYEALKKLAVGLEI 109

Query: 68  TICQLLDLPFS 78
           ++ QL   P  
Sbjct: 110 SVPQLFTPPSP 120


>gi|332158829|ref|YP_004424108.1| hypothetical protein PNA2_1189 [Pyrococcus sp. NA2]
 gi|331034292|gb|AEC52104.1| hypothetical protein PNA2_1189 [Pyrococcus sp. NA2]
          Length = 329

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 13/117 (11%)

Query: 111 TGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDR 170
             +    + +  I  P    + +            SM P   + D+  +N   + + GD 
Sbjct: 3   ASDIVFDLLLLGIFVPSIAGFIMGRPVFVSYAYSDSMTPTINRWDVFFINPLSKGDVGDI 62

Query: 171 LLIKPRTGDIVAKVLISRRGRSIDLMSLN--------CCYPVDTVEMSDIEWIARIL 219
           ++    +G      + +           N           P    +    + I +++
Sbjct: 63  VV-FNLSGKWTVHRIYAITSEGYITKGDNNVATDQQDDKNPPIKRD----QIIGKVI 114


>gi|329928143|ref|ZP_08282089.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
 gi|328938020|gb|EGG34419.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
          Length = 185

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 36/192 (18%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   +  + E+  L+   +A   G+  T   + +R         PS  +++KI      +
Sbjct: 8   LANNLKLLREQRKLSLDKVAEMTGISKTMLGQIERGES-----SPSITTVWKIANGLKLS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHN 128
              L++ P S      ++E +  +                      +      + R    
Sbjct: 63  FSSLINEPHSGTVVVSREEVQALVEDNGRIR--------------IYPYFPYEDGRRFEM 108

Query: 129 GIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISR 188
               ++           S        +  I      V  G+  + +    +   K     
Sbjct: 109 YSLEMEHGGYL------SAEAHIEGTEEFI-----TVFDGEVTI-RVDQEEYTVK----- 151

Query: 189 RGRSIDLMSLNC 200
            G SI   +   
Sbjct: 152 AGESIRFKADKP 163


>gi|319936892|ref|ZP_08011303.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1]
 gi|319807991|gb|EFW04566.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1]
          Length = 375

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I    +R  LT   LA K  +   + ++ +    E     P  +++  +      T
Sbjct: 3  LGKRIQYYRKRKQLTQEELAEKLMVSRQAISRWESDNNE-----PDVKTLLILANIFEIT 57

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          + +L+     +       E     +    
Sbjct: 58 VDELVRENEVNIDNQNIIENGSEDIIIHQ 86


>gi|317051880|ref|YP_004112996.1| helix-turn-helix domain-containing protein [Desulfurispirillum
          indicum S5]
 gi|316946964|gb|ADU66440.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5]
          Length = 71

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 18/42 (42%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   E +  + ++  L+   LA + G+  ++ N+ +      
Sbjct: 6  ENFAETVKEVRQQLGLSQEELAHELGVSFSTINRWENSKTVP 47


>gi|253577026|ref|ZP_04854349.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251843636|gb|EES71661.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 143

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + ++ + H  T   L  K  L   S +  +        R P  +++ KI    N +
Sbjct: 6  RLKQLRKEHKWTQEELGAKLNLTKVSISGYENGN-----RTPDMDTLIKISNVFNVS 57


>gi|229490099|ref|ZP_04383947.1| regulatory protein [Rhodococcus erythropolis SK121]
 gi|229322975|gb|EEN88748.1| regulatory protein [Rhodococcus erythropolis SK121]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           I   +  +     LT  GL+   G+  ++ ++ +        R P+ + +  +  
Sbjct: 14 DIGPRLRTLRRDRGLTLEGLSEATGVSVSALSRLESG-----KRRPTLDLLLPLAR 64


>gi|311739935|ref|ZP_07713769.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305008|gb|EFQ81077.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 437

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
             I  + ++  LT   +A++ GL  +  N+ +     
Sbjct: 7  GARIHALRKQRGLTQVAMAKQLGLSTSYLNQLENDQRP 44


>gi|157311139|ref|YP_001469184.1| phage repressor [Streptococcus phage P9]
 gi|119104288|gb|ABL61033.1| phage repressor [Streptococcus phage P9]
          Length = 119

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           MT F   +++  I+ +A++  ++   +A   GL        K        +  +T+ I K
Sbjct: 1   MTMF---EVYSRIEALAKKRGVSLQKVATDIGLSENYIYNLKS------KKTANTDPIEK 51

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV 118
           I    N +      L  +D     +       +         FF  G        + +
Sbjct: 52  IANYFNVST--DYLLGRTDNPKIAQDGHASVAIDLKKDAEETFFFDGHELNDEDIDLI 107


>gi|148378839|ref|YP_001253380.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932486|ref|YP_001383224.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153934537|ref|YP_001386771.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148288323|emb|CAL82400.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928530|gb|ABS34030.1| HTH domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930451|gb|ABS35950.1| HTH domain protein [Clostridium botulinum A str. Hall]
          Length = 373

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 60/215 (27%), Gaps = 19/215 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M       I + I    +   +T   LA   G+   S +K +         +P    + +
Sbjct: 1   MRDL---NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSS-----YPDIVLLPE 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +    N ++ +LL       +   KK        F         +         ++    
Sbjct: 53  LATYFNISVDELLGYSPQLTKEDIKKIYSKLSHEFAVRPFDEAMEQCNKLIKKYYSCFPF 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                     ++          ++ ++     +  + +     + +     +    T + 
Sbjct: 113 LLSIIQLLLNHSN-------LIKNDAIKKEIFQQCVFLSRRIKEESENISYIKNANTMEA 165

Query: 181 VAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWI 215
           +A++ +      I L+  N   P       D+  I
Sbjct: 166 LAEMALGNSEEVIRLL-DNKLDP---YRGDDVILI 196


>gi|29833583|ref|NP_828217.1| transcriptional regulatory protein [Streptomyces avermitilis
           MA-4680]
 gi|29610707|dbj|BAC74752.1| putative transcriptional regulatory protein [Streptomyces
           avermitilis MA-4680]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 6/124 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           + +   + R       T   LA +AG+      + ++         PS  ++ KI  A  
Sbjct: 20  QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTN-----PSIGTVVKIGDALG 74

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTG-NKWNTVGVPEIRS 125
            ++  LLD            ++ + L +               P     W+ + +P   S
Sbjct: 75  VSVTTLLDYEQGPKVRIVPADQAVRLWHTDAGSYNRLLAGTEAPGPLEMWDWLLMPGEGS 134

Query: 126 PHNG 129
           P + 
Sbjct: 135 PSDP 138


>gi|78357543|ref|YP_388992.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78219948|gb|ABB39297.1| transcriptional regulator, XRE family [Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20]
          Length = 69

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 18/42 (42%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +   E +  + ++  L+   LA + G+  ++ N+ +      
Sbjct: 6  ENFAETVKEVRQQLGLSQEELAHELGVSFSTINRWENSKTVP 47


>gi|83942534|ref|ZP_00954995.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36]
 gi|83846627|gb|EAP84503.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36]
          Length = 229

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   +  + +  N T    A +AGL  ++ +K +   +      P+ E++ K+      
Sbjct: 48  DLGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQM-----SPTYEALKKLAVGLEI 102

Query: 68  TICQLLDLPF 77
           ++ QL   P 
Sbjct: 103 SVPQLFTPPS 112


>gi|332663821|ref|YP_004446609.1| helix-turn-helix domain-containing protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332332635|gb|AEE49736.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
          1100]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
           S + + E +    +   +T   LA  A +   +  K +R         PS E + K+  
Sbjct: 27 MSIQHLGEYLKNRRKALGITQPHLAELAQISTNTLYKLERGQGN-----PSLEVLNKLTE 81

Query: 64 ATN 66
             
Sbjct: 82 VLG 84


>gi|326445242|ref|ZP_08219976.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 305

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          ++   +  +     L+       AG+   + ++ +R   +G  RW   + + ++
Sbjct: 22 QLGYRLLELRNASGLSAEQAGEAAGVSKATVSRYERG--KGNVRWNQVDQLCRV 73


>gi|317407356|gb|EFV87322.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans
          C54]
          Length = 63

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
            I  +      + + LA +  +   + N  +    +     PS    F I     + 
Sbjct: 3  NRIRDLRAERGWSQAALAEQLNVSRQTVNAIETGRYD-----PSLPLAFAIARVFGQP 55


>gi|317490219|ref|ZP_07948707.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA]
 gi|316910713|gb|EFV32334.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA]
          Length = 71

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT  +   + + +  + E  NLT   LA   G+  +   K +        R  + + + K
Sbjct: 1  MTRATRILLGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGN-----RNATIDFMEK 55

Query: 61 ILAATN 66
          +     
Sbjct: 56 VALGLG 61


>gi|303246058|ref|ZP_07332339.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
 gi|302492454|gb|EFL52325.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
          Length = 107

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
               + I  +    ++T   LA  +GL      + +R       R PS  SI ++  A 
Sbjct: 5  QDLFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERG-----RRNPSLTSIEQLAKAL 59

Query: 66 NETICQLLDLPFSDGRTTEKKEKEIPLLYFPP 97
          +  + +L  L        E +   I  +    
Sbjct: 60 DIPMAELFSLEEFRLAPEELRAILIRQIETAD 91


>gi|299146496|ref|ZP_07039564.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 3_1_23]
 gi|298516987|gb|EFI40868.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 3_1_23]
          Length = 101

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + I+   ++  +T + LAR+ G D +  ++ +    E     P   + ++I+ A   
Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTE-----PKVSTFYRIMNALGC 93


>gi|259502004|ref|ZP_05744906.1| XRE family transcriptional regulator [Lactobacillus antri DSM
          16041]
 gi|259170063|gb|EEW54558.1| XRE family transcriptional regulator [Lactobacillus antri DSM
          16041]
          Length = 73

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   +D +     +T   LA++ G+ P + +  K     G+ R    E++ K+    N  
Sbjct: 2  ITVNLDVLLAERKMTSKTLAQRIGITPANLSILK----TGKARGIRFETLAKLCHELNCQ 57

Query: 69 ICQLLDLPF 77
             +L+   
Sbjct: 58 PGDILEYQE 66


>gi|257484266|ref|ZP_05638307.1| hypothetical protein PsyrptA_13492 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331008336|gb|EGH88392.1| hypothetical protein PSYTB_01194 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 133

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 8/108 (7%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I  A+  + +   L+   LA  +    T  +K +R         P+ E +  + +    +
Sbjct: 7   IAAALKAIRKARGLSQYKLAEVS--SRTYVSKLERGQS-----SPTLEMMSTLSSPLGLS 59

Query: 69  ICQLLDLPFSDG-RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
              L+ L  +     +                  G       P G  W
Sbjct: 60  PLALVALTLAAESGQSISSLIMHAEREIDELSQAGVLKELKIPPGEPW 107


>gi|290579706|ref|YP_003484098.1| putative transcriptional regulator [Streptococcus mutans NN2025]
 gi|254996605|dbj|BAH87206.1| putative transcriptional regulator [Streptococcus mutans NN2025]
          Length = 82

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 5/77 (6%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           I  + + + L+ S LA    +   +    ++          S E  +KI      TI  
Sbjct: 5  RIQELRKINKLSQSELADALSVTRQTIISLEKGRYNA-----SLELAYKIAKYFGTTIED 59

Query: 72 LLDLPFSDGRTTEKKEK 88
          +      +        K
Sbjct: 60 VFIFEDENRGDDNNVSK 76


>gi|300771128|ref|ZP_07081004.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300761798|gb|EFK58618.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   +  KI   I  + +   +T   LA +AG+     ++ +          PS   +  
Sbjct: 13  MKDNTIFKISSRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTV-----PSLLVLIN 67

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
           I+ A    + +      SDG       +     
Sbjct: 68  IIGALEIDLTEFFKGFTSDGDLGPVIVRRKEQY 100


>gi|238798765|ref|ZP_04642236.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC
           43969]
 gi|238717397|gb|EEQ09242.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC
           43969]
          Length = 279

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 55/218 (25%), Gaps = 20/218 (9%)

Query: 5   SHKK----IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           SH++    +   I ++  + ++T   LA   G       + +   +  R      E    
Sbjct: 9   SHQENCVMVQNNIKQLRIQLSITQRELAAAVGTSQQQIQRIETGKVAAR-----LEVAQA 63

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS----GSGGFFDSGVFPTGNKWN 116
           I +   + +  +        R    K           +       G   S         +
Sbjct: 64  ICSVLKKPLNVVFPNGDHMLRRLSDKRSSCDDDLGEMAKNGIEMDGCAWSVKLWLRGHQD 123

Query: 117 TVGVPEIRSPHNGIYA-----IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
            + +P   +     YA                D+           +  +  +    G   
Sbjct: 124 YLLLPISPADQRRFYAYFQEKASPDIEHFFVFDSDEHRYALNSREVAFHQFLFEPLGRVF 183

Query: 172 LIKPR--TGDIVAKVLISRRGRSIDLMSLNCCYPVDTV 207
           + +           +++   G +I+L   +     +  
Sbjct: 184 VGENHKEDDGFTVHIILENGGPAIELCCESDELEDEEF 221


>gi|227502753|ref|ZP_03932802.1| Cro/CI transcriptional regulator [Corynebacterium accolens ATCC
          49725]
 gi|306835340|ref|ZP_07468363.1| Cro/CI transcriptional regulator [Corynebacterium accolens ATCC
          49726]
 gi|227076483|gb|EEI14446.1| Cro/CI transcriptional regulator [Corynebacterium accolens ATCC
          49725]
 gi|304568773|gb|EFM44315.1| Cro/CI transcriptional regulator [Corynebacterium accolens ATCC
          49726]
          Length = 75

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 1  MTSFSHKK---IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          M + S ++   +   +DR+ E   +T + LA++ G+ P + +  K    +   R+ +  +
Sbjct: 1  MKALSEEQEPQVICHLDRIMEERGITGAALAKEVGITPVNLSVLKNNRAKAV-RFNTLAA 59

Query: 58 IFKILAATNETICQ 71
          +   L      I +
Sbjct: 60 LCAALDCQPGDIFE 73


>gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016]
 gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 83

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT+    K+ + I  +  + N+T   LA   G++ +  ++ +   I      P  E+I K
Sbjct: 1  MTAM---KVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPI--PKLEAISK 55

Query: 61 ILAAT 65
           L   
Sbjct: 56 ALEVP 60


>gi|210634331|ref|ZP_03298067.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279]
 gi|210158858|gb|EEA89829.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I    E   ++   LA K  +   + +  +R          S   +  +   + +
Sbjct: 2   DISNQIKTRREAMGISQEQLAEKLYVSRQTISNWERNKT--YPDVQSLLMLSILFDTSID 59

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVG 119
           T+ +       +    ++K     + +      G    + V      ++ + 
Sbjct: 60  TLVKGDVTIMEEAVERDRKRMGAQMQWLAVLMLGLLALTLVLMLTPAFDWME 111


>gi|254467746|ref|ZP_05081153.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
 gi|206684183|gb|EDZ44669.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
          Length = 83

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
           + K I  A+    +   LT   LA +AG+   + +  +      +
Sbjct: 6  RTPKDIGTALRNARKAQGLTQGELAARAGVWQRTVSSIETSSSGAK 51


>gi|197334373|ref|YP_002156283.1| HTH-type transcriptional regulator HipB [Vibrio fischeri MJ11]
 gi|197315863|gb|ACH65310.1| HTH-type transcriptional regulator HipB [Vibrio fischeri MJ11]
          Length = 87

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M  ++ K++   +  +  +HNLT + LA+K G+  ++ +  +             +++FK
Sbjct: 5  MMIYNPKQLANHLKLIRTKHNLTQTELAKKVGVKQSTLSSFENH-----PETTQLQTLFK 59

Query: 61 ILAATNET 68
          IL A    
Sbjct: 60 ILHALEVH 67


>gi|183600898|ref|ZP_02962391.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC
          25827]
 gi|188019224|gb|EDU57264.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC
          25827]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          +I E I  +  +  LT + L +  G+     ++ +R 
Sbjct: 15 EIGEFIRMIRIKKGLTGAELGKLIGVSQQQISRYERG 51


>gi|163716598|gb|ABY40510.1| putative repressor [Burkholderia phage Bups phi1]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 16/47 (34%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          M +  + +         E   L+   +A   G+   +  K +R G  
Sbjct: 1  MPAMENPEFGRRAKERREALGLSQKHVAELVGVSQPAIAKVERGGST 47


>gi|270308504|ref|YP_003330562.1| DNA-binding protein [Dehalococcoides sp. VS]
 gi|270154396|gb|ACZ62234.1| DNA-binding protein [Dehalococcoides sp. VS]
          Length = 69

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  +   +NLT   LA K G+   +    +R         PS E  FKI A    TI ++
Sbjct: 5  LKVLRAINNLTQEELADKLGITRQTVISIERGKY-----SPSLELAFKIAALFKTTIEEV 59

Query: 73 LDLPFSDGRT 82
                    
Sbjct: 60 FTYNTEQEGQ 69


>gi|163849608|ref|YP_001637651.1| helix-turn-helix domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163661213|gb|ABY28580.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1]
          Length = 134

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 2/95 (2%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + E I  + +   LT + L +  G+      K +           S   I ++L     +
Sbjct: 18  VGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLS--DIARVLEVRVSS 75

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
                +    D        +    +    + S   
Sbjct: 76  FYDGDEGEGEDRAEVFGFLRTHGAIDLLRAFSEIE 110


>gi|86742835|ref|YP_483235.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86569697|gb|ABD13506.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 403

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + + ++  R ++T + LA +AG+      K ++   +G  R  +  S+ + L     T
Sbjct: 7  LGDRVAQVRVRRSMTQTELAERAGVSTDLVTKLEQGQRDG-IRISTLHSLARALDVPTAT 65

Query: 69 ICQLLDLPFSDGRTTEKKEKEIPLL 93
            ++               +++ L 
Sbjct: 66 FFEVEQEETVSDNEAFIPLRKLLLP 90


>gi|59712076|ref|YP_204852.1| DNA-binding transcriptional regulator HipB [Vibrio fischeri
          ES114]
 gi|59480177|gb|AAW85964.1| HipB transcriptional repressor, hipAB operon [Vibrio fischeri
          ES114]
          Length = 87

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M  ++ K++   +  +  +HNLT + LA+K G+  ++ +  +             +++FK
Sbjct: 5  MMIYNPKQLANHLKLIRTKHNLTQTELAKKVGVKQSTLSSFENH-----PETTQLQTLFK 59

Query: 61 ILAATNET 68
          IL A    
Sbjct: 60 ILHALEVH 67


>gi|39997211|ref|NP_953162.1| transcriptional regulator [Geobacter sulfurreducens PCA]
 gi|39984101|gb|AAR35489.1| transcriptional regulator, putative [Geobacter sulfurreducens
          PCA]
          Length = 143

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          E +  +     L+ + LA +A L  ++  +       G  R PS +++ K+    + +
Sbjct: 35 ERLKSLMADKGLSSAELADRADLARSALTQFF-----GGERKPSADALVKLANVLDSS 87


>gi|29350141|ref|NP_813644.1| hypothetical protein BT_4733 [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|253571670|ref|ZP_04849076.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384450|ref|ZP_06994010.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
 gi|29342053|gb|AAO79838.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|251838878|gb|EES66963.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262729|gb|EFI05593.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
          Length = 101

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           + I+   ++  +T + LAR+ G D +  ++ +    E     P   + ++I+ A   
Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTE-----PKVSTFYRIMNALGC 93


>gi|15614688|ref|NP_242991.1| post-exponential-phase responses transcriptional regulator
          [Bacillus halodurans C-125]
 gi|10174744|dbj|BAB05844.1| transcriptional regulator of post-exponential-phase responses
          (PbsX(xre) family) [Bacillus halodurans C-125]
          Length = 112

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I E + +      L+ S LA +AG+  +  +  +R         PS   + KI    + +
Sbjct: 3  IGERVKKYRLEKELSLSELAERAGVAKSYLSSIERNIQT----NPSIHFLEKISQVLDVS 58


>gi|75758481|ref|ZP_00738602.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228904936|ref|ZP_04068988.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL
          4222]
 gi|74494008|gb|EAO57103.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228854678|gb|EEM99284.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL
          4222]
          Length = 65

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  + +   ++   LA + GL  T  ++ +        + P+ +   KI      +
Sbjct: 4  IAELRKEKLISQEKLAEQVGLSRTYISEIENN-----KKQPNVKLAIKIAKVLGTS 54


>gi|115359716|ref|YP_776854.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285004|gb|ABI90520.1| transcriptional regulator, XRE family with cupin sensor
           [Burkholderia ambifaria AMMD]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 6/147 (4%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A
Sbjct: 22  TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNA 76

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEI 123
              T+ +L   P +          +IP L           +         +W  + +P  
Sbjct: 77  LGITLDELFSQPKAAETIRVDGPHDIPTLAGHDGRYQLRVWGPIDLAGKFEWYELTLPGG 136

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPL 150
            +  +  +   T++          +  
Sbjct: 137 GALVSNAHEPGTREHLTVLHGAMEIDA 163


>gi|329889881|ref|ZP_08268224.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
 gi|328845182|gb|EGF94746.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
          Length = 133

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 16/51 (31%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF 59
          I E + R  +   L+ + L  K G+      K +              S+ 
Sbjct: 14 IGERVRRRRKELGLSQTALGAKIGVSCQQIQKYENGRNSVAASRLHQLSLA 64


>gi|328471556|gb|EGF42436.1| DNA-binding protein [Listeria monocytogenes 220]
          Length = 125

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  + +++ LT   LA K G   ++ +K +          P    + K+      T
Sbjct: 4  GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 57


>gi|327393838|dbj|BAK11260.1| putative HTH-type transcriptional regulator YdcN [Pantoea
          ananatis AJ13355]
          Length = 181

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          H+ + + + ++ + +  + S  A K G+      + +R         P+  +++KI    
Sbjct: 5  HQYLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGES-----SPTVATLWKIATGF 59

Query: 66 NETI 69
          N   
Sbjct: 60 NVPF 63


>gi|325262886|ref|ZP_08129622.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324031980|gb|EGB93259.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 81

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            S+K I   I  + + + LT   +A+K  +   + +  +        R P    + +I 
Sbjct: 1  MMSNK-IGCKIRALRKMNYLTQEQMAKKLNMTRQTLSNYELG-----KRIPDIFELIRIA 54

Query: 63 AATNETICQ 71
               ++ +
Sbjct: 55 DLFQISLDE 63


>gi|317498577|ref|ZP_07956870.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|316894064|gb|EFV16253.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 217

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I E I    E+  +T   LA   G+ P S  K +    + + + P  E I   L 
Sbjct: 3  IGEKIRYCREQIGITQGKLAELTGIHPVSIRKYE--TNKMQPQPPQLEKIAAALD 55


>gi|315304464|ref|ZP_07874746.1| DNA-binding protein [Listeria ivanovii FSL F6-596]
 gi|313627167|gb|EFR96018.1| DNA-binding protein [Listeria ivanovii FSL F6-596]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  + +++ LT   LA K G   ++ +K +          P    + K+      T
Sbjct: 7  GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 60


>gi|313206573|ref|YP_004045750.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM
          15868]
 gi|312445889|gb|ADQ82244.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM
          15868]
 gi|315023431|gb|EFT36439.1| helix-turn-helix domain protein [Riemerella anatipestifer RA-YM]
 gi|325335979|gb|ADZ12253.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD]
          Length = 122

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           KI   I R+ ER   +   +A++  +   S+ + +    +      + E + KI     
Sbjct: 2  NKIGVNIRRLRERKGFSQEYVAQELNISQASYARLENENTK-----VTVERLSKIAEILE 56

Query: 67 ETICQLLDLPFSDGRTTEKKEKEI 90
            I +  +      +T    E   
Sbjct: 57 TDITEFFNENRLSIQTQNNYEGSY 80


>gi|310826387|ref|YP_003958744.1| hypothetical protein ELI_0767 [Eubacterium limosum KIST612]
 gi|308738121|gb|ADO35781.1| hypothetical protein ELI_0767 [Eubacterium limosum KIST612]
          Length = 113

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 5/116 (4%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
           +    K I + I +     N++   LARK G+  T     +        +  S +S+ + 
Sbjct: 3   SRLDQKAIGQRIRQRRTFLNMSREDLARKIGITQTFLTDIELGT-----KGFSLKSLERF 57

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
             A   +   +L     D +       +I                 +F   ++   
Sbjct: 58  CEALKMSSDSILFGKSLDEKEKNTALLDILEHCPDEKKEYAERMMMLFLMSHETEN 113


>gi|293378376|ref|ZP_06624545.1| DNA-binding protein [Enterococcus faecium PC4.1]
 gi|292643240|gb|EFF61381.1| DNA-binding protein [Enterococcus faecium PC4.1]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 8/120 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S   + + +  + ++  +T   LA   G+   S +K +          P    + K
Sbjct: 1   MEELS---LSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQS-----MPDVLILPK 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + +  + ++ +LL       +   +   +     F         +         ++    
Sbjct: 53  LASFFDVSVDELLGYHPQLTKEQIRHFYQQWTTAFSEEPFEYVMEDCRKAVKQYYSCYPF 112


>gi|291544668|emb|CBL17777.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 119

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I   I ++ + + LT + LA    ++ +S    +        R PS  +I  +    N +
Sbjct: 8  IGNKIRQLRKENKLTQAQLAAVCYINRSSIGLYENG-----LREPSAGTIAYLAKYFNVS 62


>gi|269963851|ref|ZP_06178163.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831338|gb|EEZ85485.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 269

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   + + +  A+ +  +   LT   L+ K G+  ++F   KR                +
Sbjct: 1   MRELTPEYLLAALRQAIKTKGLTYRELSEKMGMPLSTF---KRHLTSTNLALDKLLEYCR 57

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG 101
            +  T + + +L +   ++ +    + ++     FP     
Sbjct: 58  AVDCTLDELQKLANQLQAEDQDYFSRTQDEVFFQFPHLYDF 98


>gi|300022307|ref|YP_003754918.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524128|gb|ADJ22597.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 10/168 (5%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   I R     NLT + L+  AGL     ++ +           S +++ ++ AA   
Sbjct: 36  RIGAVIKRRRAEANLTLADLSAGAGLSSAMLSRIENGMAMA-----SLDALERLCAAVGI 90

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF-FDSGVFPTGNKWNTVGV---PEI 123
            +  L     +   + +  ++   +         G  +    +  G +          + 
Sbjct: 91  GLGDLFKETDTQRGSAQLVKRAEQMEVVRVGTKFGHTYRLLAYDRGPRKLFEPFFIEMDK 150

Query: 124 RSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRL 171
           +S     ++    +  +  Q       +     L+         GD +
Sbjct: 151 KSESYPRFSHPGTEFIYMLQGRMEYR-FGDRTYLVEPGDAFTFSGDVV 197


>gi|255029672|ref|ZP_05301623.1| DNA-binding protein [Listeria monocytogenes LO28]
          Length = 68

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  + +++ LT   LA K G   ++ +K +          P    + K+      T
Sbjct: 7  GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 60


>gi|228962054|ref|ZP_04123549.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228797628|gb|EEM44746.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 125

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           + +  + +   L+   L    G+  T+ +  +  G E     P  +++ +I    + + 
Sbjct: 9  GQRLKELRKNKKLSMRQLGEVLGVKQTNVSNWENVGTE-----PDYKTLIRIAQFFDVST 63

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLL 93
            L+           K+++EI LL
Sbjct: 64 DYLIGNSVEFNDNESKEKREIALL 87


>gi|229156698|ref|ZP_04284785.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC
          4342]
 gi|228626618|gb|EEK83358.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC
          4342]
          Length = 125

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  + +  N +    A + G+  +++   +        R PS +S+ KI    + ++
Sbjct: 2  LERLSELRKNQNWSLQETADRLGIAKSTYAGYENGY-----RLPSLQSLSKIADLFDTSV 56

Query: 70 CQLLDLPFSDGRT 82
            +L         
Sbjct: 57 DYILGRIEHSHPN 69


>gi|224825808|ref|ZP_03698912.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224602032|gb|EEG08211.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 65

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
              +R  LT + LA+  G      +K +    +   
Sbjct: 5  KEARKRLGLTQNDLAKAVGASQAHISKLENGTEQVSP 41


>gi|168183417|ref|ZP_02618081.1| putative DNA-binding protein [Clostridium botulinum Bf]
 gi|182673458|gb|EDT85419.1| putative DNA-binding protein [Clostridium botulinum Bf]
          Length = 140

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 4/89 (4%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E    + +   L+   LA  + +  T  ++ +    +     PS   +  I      + 
Sbjct: 4  GEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQ----NPSPNILKSIAPHLGISY 59

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
           +L+        + E ++    +      
Sbjct: 60 GELMIKAGYIDESIEHEKYTEHIFRNSDG 88


>gi|196040012|ref|ZP_03107315.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196029271|gb|EDX67875.1| DNA-binding protein [Bacillus cereus NVH0597-99]
          Length = 186

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            H ++ + I    +++ +T    A  AG+  +  ++ +R            E I K L 
Sbjct: 1  MIHDRLGQTILSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSV--LELIAKALN 58

Query: 64 AT 65
            
Sbjct: 59 VP 60


>gi|167032863|ref|YP_001668094.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859351|gb|ABY97758.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 177

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/196 (9%), Positives = 50/196 (25%), Gaps = 28/196 (14%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              H  +   +  +     ++ + LA ++G+        +           S  ++  I 
Sbjct: 1   MLQHVSL--NVRSLRNAAGMSQTALAERSGVSRRMLVAIEAGEKN-----VSLTTLDLIA 53

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
            A       L+  P               +     +G      + +  T      V + E
Sbjct: 54  EALGVAFSTLIQAPDLRDP--------GRIEELAWAGEHPQSRAVLLGTSAARREVELWE 105

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILIL--NSAIQVNCGDRLLIKPRTGDI 180
                   Y+ +        +  S      +G + ++  +   ++  G   +        
Sbjct: 106 WTLAPGECYSSEADA-----EGWSEQIYVAEGQLTLIIEDVEHRLQVGQFHVFPSNC--- 157

Query: 181 VAKVLISRRGRSIDLM 196
                  R   ++ + 
Sbjct: 158 ---RYAYRNDGAVAVR 170


>gi|167033912|ref|YP_001669143.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860400|gb|ABY98807.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 199

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 21/180 (11%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +   I  + +R  +T + LA  + L     ++ +R        +PS  ++F I  +   T
Sbjct: 20  LGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLS-----YPSIPALFNIARSLGVT 74

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTV---GVPEIRS 125
             Q      +     ++                G  D  + P  N+   +     P    
Sbjct: 75  -IQWFFASEATTAPEDQGYVVRRNSRLSVHYEDGIVDQLLTPQPNRQLEILHSRFPPGTY 133

Query: 126 PHNGIYAIQTQDTRHKTQDTSMLPL------YRKGDILILNSAIQVNCG-----DRLLIK 174
                Y+   ++  +    T  L +        +GD    +S      G     D ++I 
Sbjct: 134 -SQQSYSHDGEEAGYLLSGTFELWVGERHFQLSEGDSFSFSSQEPHRYGNPGEVDAVVIW 192


>gi|114766440|ref|ZP_01445405.1| putative DNA-binding protein [Pelagibaca bermudensis HTCC2601]
 gi|114541297|gb|EAU44346.1| putative DNA-binding protein [Roseovarius sp. HTCC2601]
          Length = 184

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 14/169 (8%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M S    ++ + +  +    +LT   LA ++GL   + ++ ++  +      P+ E + K
Sbjct: 1   MVSPLTTRLSQRLSALRAERDLTLEALAAQSGLSRAALSRMEKAEV-----SPTAEQLGK 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + AA   T+ +LL +           E E P+                   G   +    
Sbjct: 56  LCAAYGLTMSRLLAMVEESF-PACVPEAEQPVWQDRGFTRRVVSPGSAALAGEVLDCTLA 114

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGD 169
           P+    ++       +                   + + +    +  GD
Sbjct: 115 PDSDISYHRPPVADLEHHLVLLTGRL--------AVTLDDRRHDLAPGD 155


>gi|16801490|ref|NP_471758.1| hypothetical protein lin2428 [Listeria innocua Clip11262]
 gi|289435611|ref|YP_003465483.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|16414950|emb|CAC97655.1| lin2428 [Listeria innocua Clip11262]
 gi|289171855|emb|CBH28401.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|313617561|gb|EFR89887.1| DNA-binding protein [Listeria innocua FSL S4-378]
 gi|313622678|gb|EFR93041.1| DNA-binding protein [Listeria innocua FSL J1-023]
 gi|313632189|gb|EFR99260.1| DNA-binding protein [Listeria seeligeri FSL N1-067]
 gi|313636591|gb|EFS02297.1| DNA-binding protein [Listeria seeligeri FSL S4-171]
          Length = 115

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  + +++ LT   LA K G   ++ +K +          P    + K+      T
Sbjct: 4  GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 57


>gi|16804372|ref|NP_465857.1| hypothetical protein lmo2334 [Listeria monocytogenes EGD-e]
 gi|217963568|ref|YP_002349246.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|226224879|ref|YP_002758986.1| transcriptional regulator [Listeria monocytogenes Clip81459]
 gi|254831241|ref|ZP_05235896.1| DNA-binding protein [Listeria monocytogenes 10403S]
 gi|254901140|ref|ZP_05261064.1| DNA-binding protein [Listeria monocytogenes J0161]
 gi|254992018|ref|ZP_05274208.1| DNA-binding protein [Listeria monocytogenes FSL J2-064]
 gi|255022554|ref|ZP_05294540.1| DNA-binding protein [Listeria monocytogenes FSL J1-208]
 gi|255025516|ref|ZP_05297502.1| DNA-binding protein [Listeria monocytogenes FSL J2-003]
 gi|255519749|ref|ZP_05386986.1| DNA-binding protein [Listeria monocytogenes FSL J1-175]
 gi|284802775|ref|YP_003414640.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578]
 gi|284995917|ref|YP_003417685.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923]
 gi|16411822|emb|CAD00412.1| lmo2334 [Listeria monocytogenes EGD-e]
 gi|217332838|gb|ACK38632.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|225877341|emb|CAS06055.1| Putative transcriptional regulator [Listeria monocytogenes
          serotype 4b str. CLIP 80459]
 gi|284058337|gb|ADB69278.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578]
 gi|284061384|gb|ADB72323.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923]
 gi|307571856|emb|CAR85035.1| HTH-type transcriptional regulator, putative [Listeria
          monocytogenes L99]
 gi|328465370|gb|EGF36617.1| DNA-binding protein [Listeria monocytogenes 1816]
          Length = 115

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  + +++ LT   LA K G   ++ +K +          P    + K+      T
Sbjct: 4  GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 57


>gi|46908504|ref|YP_014893.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|47092432|ref|ZP_00230222.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|47096032|ref|ZP_00233634.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224499013|ref|ZP_03667362.1| DNA-binding protein [Listeria monocytogenes Finland 1988]
 gi|224503536|ref|ZP_03671843.1| DNA-binding protein [Listeria monocytogenes FSL R2-561]
 gi|258611370|ref|ZP_05231528.2| DNA-binding protein [Listeria monocytogenes FSL N3-165]
 gi|258612011|ref|ZP_05243634.2| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|258612332|ref|ZP_05270022.2| DNA-binding protein [Listeria monocytogenes F6900]
 gi|290893622|ref|ZP_06556604.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
 gi|293596277|ref|ZP_05230092.2| DNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|293596748|ref|ZP_05264022.2| DNA-binding protein [Listeria monocytogenes J2818]
 gi|293597029|ref|ZP_05266697.2| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|300763918|ref|ZP_07073914.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL
          N1-017]
 gi|46881776|gb|AAT05070.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|47015629|gb|EAL06560.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47019209|gb|EAL09952.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|258599219|gb|EEW12544.1| DNA-binding protein [Listeria monocytogenes FSL N3-165]
 gi|258607678|gb|EEW20286.1| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|258610937|gb|EEW23545.1| DNA-binding protein [Listeria monocytogenes F6900]
 gi|290556824|gb|EFD90356.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
 gi|293584899|gb|EFF96931.1| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|293592028|gb|EFG00363.1| DNA-binding protein [Listeria monocytogenes J2818]
 gi|293594334|gb|EFG02095.1| DNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|300515259|gb|EFK42310.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL
          N1-017]
 gi|332312759|gb|EGJ25854.1| DNA-binding protein [Listeria monocytogenes str. Scott A]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           E +  + +++ LT   LA K G   ++ +K +          P    + K+      T
Sbjct: 7  GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDN-----HRPPIFILAKLAEILGTT 60


>gi|332703646|ref|ZP_08423734.1| hypothetical protein Desaf_2517 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553795|gb|EGJ50839.1| hypothetical protein Desaf_2517 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 187

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/175 (9%), Positives = 51/175 (29%), Gaps = 9/175 (5%)

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +    A    +  Q              +  +    +                T +    
Sbjct: 1   MADNAATPRASSDQAPRSRPHLSPEDCCEIVDDGPKHGSIMRMNRLLALEGQATQSTTEA 60

Query: 118 VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPR 176
           +     R      +A +     ++ +D  M P  R G I+ +++  + +  G+  L++  
Sbjct: 61  LPFDLDRLRRMAGHAARITTFPYEIRDRGMEPSLRLGSIVGVDAEQRGLISGELYLLQFP 120

Query: 177 TGDI-----VAKVLIS-RRGRSIDLMSLNCCYPVDTVEMSDI--EWIARILWASQ 223
                    + + +    +   + + + +  Y    +   ++      R++W  Q
Sbjct: 121 AIGAQPRAAIVRRVYHGEQPGVLLVRAEDETYSEPPMPAEEVLAAIRGRVVWVMQ 175


>gi|326333336|ref|ZP_08199583.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium
          Broad-1]
 gi|325948980|gb|EGD41073.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium
          Broad-1]
          Length = 224

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
             +        LT   LAR++G    S +  +R       + P+   + +IL   +  
Sbjct: 7  GSLLKAARVARGLTQETLARRSGTSQPSLSAYERGT-----KSPTLAVLERILRCLDFE 60


>gi|313619216|gb|EFR90979.1| signal peptidase I [Listeria innocua FSL S4-378]
          Length = 167

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                 SM+P     D +I+N   +V+  D ++ +   G    K +I   G +++  + 
Sbjct: 21  ILVDGISMMPTLHSDDRVIINRFGEVDRFDVIVFREADGKEYIKRVIGLPGDTVEYKAD 79


>gi|296140142|ref|YP_003647385.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296028276|gb|ADG79046.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 113

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG-RNRWPSTESIFKILAAT 65
            +   +  + +   ++   LA +AGL     +  +R    G R   P   +++++ AA 
Sbjct: 13 DSLAYRLLTLRKARGISQEKLAERAGLHRNQISNIERNVSSGDRFSDPHMSTLYRLAAAL 72


>gi|294679084|ref|YP_003579694.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294477900|gb|ADE87287.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB
           1003]
          Length = 114

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            A+    +   LT + LA K+G++  +  + +    +G     S  ++  +  A   ++ 
Sbjct: 56  SALRVYRDLRGLTQAALAEKSGVNRVTVAEIETGRKQG-----SIATLRALADALGVSLD 110

Query: 71  Q 71
            
Sbjct: 111 D 111


>gi|258447676|ref|ZP_05695818.1| cI-like repressor protein [Staphylococcus aureus A6300]
 gi|257853523|gb|EEV76484.1| cI-like repressor protein [Staphylococcus aureus A6300]
          Length = 116

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + + ++     ++ S L+R+ G+   S +       E +        + K L      + 
Sbjct: 10 DRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAK--QDKVFELAKALNVNEAWLM 67

Query: 71 QL 72
            
Sbjct: 68 GF 69


>gi|312109406|ref|YP_003987722.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1]
 gi|311214507|gb|ADP73111.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1]
          Length = 139

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     +K+ E +  + ++HN T   LA+   +  +  +K +   +      P  +S+ K
Sbjct: 1  MKKM--RKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGEL-----LPDVQSLEK 53

Query: 61 ILAATNET 68
          +      +
Sbjct: 54 LSNLYEVS 61


>gi|239996716|ref|ZP_04717240.1| transcriptional regulator, Cro/CI family protein [Alteromonas
          macleodii ATCC 27126]
          Length = 175

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   +   +   + ++ +   ++ S LA  AG+  ++ ++ ++         P+ ++I++
Sbjct: 1  MNQSTLNILGRHLQKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGN-----PTLDTIWR 55

Query: 61 ILAATNETICQ 71
          +    +    Q
Sbjct: 56 LAKQLDVPFGQ 66


>gi|227507935|ref|ZP_03937984.1| transcription regulator [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227192599|gb|EEI72666.1| transcription regulator [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 212

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I E I +  ++ NLT   LA +  L   + +  +         +P  +SI ++      +
Sbjct: 8   ISEKIKQCRKQKNLTQKDLADELHLSRKTISGWENGRG-----YPDIKSITQLSDIFGIS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKW 115
           +  LL          ++ ++ +                 +   G  +
Sbjct: 63  VDDLLRDDNLLEHYADQDKRSLLANKIAQITYYLILALTIVSYGTIF 109


>gi|224825971|ref|ZP_03699074.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224601608|gb|EEG07788.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 37/137 (27%), Gaps = 15/137 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            +   + +  +    +   LA  AG+        +           S  ++ ++ AA   
Sbjct: 11  DVSANLRQARQALGWSQDKLATAAGVSRRMLVNIEAGDSN-----VSLATLDRLAAALGL 65

Query: 68  TICQLLDLPFSD----------GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +L+  P ++           +          L     +G            G +++ 
Sbjct: 66  SFAELVRPPAANPRQPAAPVTVWQGRHPDSHASLLQSLGSAGRTVELWLWQLAAGERYDA 125

Query: 118 VGVPEIRSPHNGIYAIQ 134
              P        + A +
Sbjct: 126 EADPAGSHEMLYVIAGE 142


>gi|221234777|ref|YP_002517213.1| MerR family transcriptional regulator [Caulobacter crescentus
          NA1000]
 gi|220963949|gb|ACL95305.1| transcriptional regulator, MerR family [Caulobacter crescentus
          NA1000]
          Length = 480

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 1  MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          M +   K+      +   + R+     +T + +A + G+  +  N  +R       R  +
Sbjct: 1  MATLEKKQNDKKLFLGGRLKRLRRDLGVTQARMAEELGVSASYLNLLERNQ-----RPVT 55

Query: 55 TESIFKILA 63
           + + ++  
Sbjct: 56 AQILLRLAD 64


>gi|219853774|ref|YP_002470896.1| hypothetical protein CKR_0431 [Clostridium kluyveri NBRC 12016]
 gi|219567498|dbj|BAH05482.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 69

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I ++ +  N     LA   G+   + N  +    +     P+    FK+      T
Sbjct: 9  IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYD-----PTLLLAFKLANILGTT 59


>gi|153953129|ref|YP_001393894.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346010|gb|EDK32546.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 65

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I ++ +  N     LA   G+   + N  +    +     P+    FK+      T
Sbjct: 5  IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYD-----PTLLLAFKLANILGTT 55


>gi|160895617|ref|YP_001561199.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361201|gb|ABX32814.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 227

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  H+ +   + +  +   LT   +A  +GL  ++ +K++R  I       S E +  
Sbjct: 39  MPAGKHE-VGAKLRKARKERGLTLQQVAESSGLAVSTISKAERGQI-----ALSYEKVLM 92

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
           +  A +  + +L  +  +     +                   +
Sbjct: 93  LGNALDIDMTRLFMVGDAQQAAGDTPTVVKDCFEDVQRYETDQY 136


>gi|161521857|ref|YP_001585284.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|189351982|ref|YP_001947609.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gi|160345907|gb|ABX18992.1| transcriptional regulator, XRE family [Burkholderia multivorans
           ATCC 17616]
 gi|189336004|dbj|BAG45073.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 25  RVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 79

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSP 126
           T+ +L   P +          +IP L           +         +W  + +P   + 
Sbjct: 80  TLDELFSQPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPIDLAGKFEWYELTLPGGGAL 139

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL 150
            +  +   T++     Q T  +  
Sbjct: 140 VSNAHEPGTREHLTVLQGTMEIEA 163


>gi|38637847|ref|NP_942821.1| putative regulatory protein [Ralstonia eutropha H16]
 gi|32527185|gb|AAP85935.1| putative regulatory protein [Ralstonia eutropha H16]
          Length = 167

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +  AI R      LT   LA  AGL   S N  +   +       + +S+ +++    
Sbjct: 6  LGNAIQRKRVALGLTQQQLADMAGLSRQSLNGIEHGSVNA-----TLQSLGRLMDVLG 58


>gi|91790853|ref|YP_551804.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700733|gb|ABE46906.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 231

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 18/46 (39%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
            +  ++   I    + H  +   LA  AGL   +  + ++  + G
Sbjct: 12 KLTAAELAAFIKAYRQVHRWSQEQLADIAGLSVRTIQRVEQGAVAG 57


>gi|28870630|ref|NP_793249.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971343|ref|ZP_03399458.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301381233|ref|ZP_07229651.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302061820|ref|ZP_07253361.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40]
 gi|302131845|ref|ZP_07257835.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28853878|gb|AAO56944.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213923881|gb|EEB57461.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|331019463|gb|EGH99519.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 189

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 15/133 (11%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
               H  +   + R+    +L+ + LA K+G+        +           S  ++ ++
Sbjct: 10  PVLQH--VSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKN-----VSLATLDRV 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKE--------IPLLYFPPSGSGGFFDSGVFPTGN 113
             A       L+  P +   +   +             LL    +             G+
Sbjct: 63  AEALEVAFSDLIQAPENRDHSRINELAWAGTIPGSKAVLLARAIARREVELWEFCLAPGD 122

Query: 114 KWNTVGVPEIRSP 126
            + +   PE  S 
Sbjct: 123 AYVSEADPEGWSE 135


>gi|83648872|ref|YP_437307.1| IS21 family transposase [Hahella chejuensis KCTC 2396]
 gi|83636915|gb|ABC32882.1| transposase, IS21 family [Hahella chejuensis KCTC 2396]
          Length = 513

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 3/119 (2%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              S +KI E + R+     L+   +A   G+   + ++  R   E    WP  E++   
Sbjct: 4   KRLSMRKIKEVL-RLKWERGLSNRQVAEACGISRPTVSEYLRRAAEADVSWPLPENLSGA 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                           + G    ++  E              +        N +     
Sbjct: 63  QLEQLLFPPPPDLPAQARGIPDWRRIHEELRGKNVTLFL--LWQEYREANPNGYQYSWF 119


>gi|83644045|ref|YP_432480.1| IS21 family transposase [Hahella chejuensis KCTC 2396]
 gi|83648283|ref|YP_436718.1| IS21 family transposase [Hahella chejuensis KCTC 2396]
 gi|83648971|ref|YP_437406.1| IS21 family transposase [Hahella chejuensis KCTC 2396]
 gi|83632088|gb|ABC28055.1| transposase, IS21 family [Hahella chejuensis KCTC 2396]
 gi|83636326|gb|ABC32293.1| transposase, IS21 family [Hahella chejuensis KCTC 2396]
 gi|83637014|gb|ABC32981.1| transposase, IS21 family [Hahella chejuensis KCTC 2396]
          Length = 513

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 3/119 (2%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
              S +KI E + R+     L+   +A   G+   + ++  R   E    WP  E++   
Sbjct: 4   KRLSMRKIKEVL-RLKWERGLSNRQVAEACGISRPTVSEYLRRAAEADVSWPLPENLSGA 62

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
                           + G    ++  E              +        N +     
Sbjct: 63  QLEQLLFPPPPDLPAQARGIPDWRRIHEELRGKNVTLFL--LWQEYREANPNGYQYSWF 119


>gi|33591920|ref|NP_879564.1| putative transcriptional regulator [Bordetella pertussis Tohama I]
 gi|33595020|ref|NP_882663.1| putative transcriptional regulator [Bordetella parapertussis 12822]
 gi|33599298|ref|NP_886858.1| putative transcriptional regulator [Bordetella bronchiseptica RB50]
 gi|33565096|emb|CAE40047.1| putative transcriptional regulator [Bordetella parapertussis]
 gi|33571564|emb|CAE41050.1| putative transcriptional regulator [Bordetella pertussis Tohama I]
 gi|33575344|emb|CAE30807.1| putative transcriptional regulator [Bordetella bronchiseptica RB50]
 gi|332381337|gb|AEE66184.1| putative transcriptional regulator [Bordetella pertussis CS]
          Length = 147

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 11/110 (10%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +FS     + +       +LT   LAR +GL  ++    +    +      S+ S+ K
Sbjct: 1   MKTFS-----DRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQ------SSRSVRK 49

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           + AA    +  L     S     +         Y+      G       P
Sbjct: 50  LAAALQVNLDWLETGKGSMESLADYSASPAGGAYYLMEPGSGEAPPRALP 99


>gi|116628702|ref|YP_813874.1| transcriptional regulator [Lactobacillus gasseri ATCC 33323]
 gi|300362660|ref|ZP_07058836.1| transcriptional regulator [Lactobacillus gasseri JV-V03]
 gi|116094284|gb|ABJ59436.1| Predicted transcriptional regulator [Lactobacillus gasseri ATCC
          33323]
 gi|300353651|gb|EFJ69523.1| transcriptional regulator [Lactobacillus gasseri JV-V03]
          Length = 70

 Score = 42.4 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 7  KKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++I    +    ++  L+   LA++  +   + N  +          PS +   K+    
Sbjct: 3  ERIAMNRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYN-----PSLDLCLKLAHEL 57


>gi|330911300|gb|EGH39810.1| prophage MuSo1, transcriptional regulator, Cro/CI family
           [Escherichia coli AA86]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 5   SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAA 64
           +  +  E +    +   ++ + LAR++G+  T+  K  +  I     +P+ +S+  +  A
Sbjct: 24  TINRFGERLKVAMK--GMSNAELARRSGMSETTIRKYLQGKI-----YPALDSLAIVADA 76

Query: 65  TNETICQLLDLPFSDGRTTEKKEKEIPL 92
              ++  L        +T  + + +   
Sbjct: 77  CGVSLTWLATGEQQTNQTIVRDDAKQNY 104


>gi|325689902|gb|EGD31906.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK115]
 gi|325696861|gb|EGD38749.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK160]
 gi|327459814|gb|EGF06154.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1057]
          Length = 94

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + +  + E+   + + +A   G    + +  +            + S+ ++      +
Sbjct: 2  LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTI-----LDSVSLIRLADFYQIS 56

Query: 69 ICQLL 73
          + +L 
Sbjct: 57 LDELC 61


>gi|310830502|ref|YP_003965603.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2]
 gi|309249969|gb|ADO59535.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
                 I  + ER   T   ++   G+  +  N+ ++    G  + PS + I K+  A +
Sbjct: 155 DNFGSLIKHLRERKGYTLDDMSISTGISSSYINRIEK----GERKSPSVKVIQKLATALD 210

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLL 93
                LL++   +  +TE +  E  LL
Sbjct: 211 TNYMDLLNVANPENESTELQPLEEHLL 237


>gi|283784602|ref|YP_003364467.1| LacI-family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948056|emb|CBG87620.1| putative LacI-family transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/131 (8%), Positives = 35/131 (26%), Gaps = 4/131 (3%)

Query: 16  MAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
           M +++ +T S +AR+AG+   + +         R    + E +F+           +   
Sbjct: 1   MQKKNKITMSDIAREAGVSQATVSLVLNNSRTIRLSDATRERVFQAAQQLGYQKMIVAHR 60

Query: 76  PFSDGRT----TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIY 131
                      +     +  +     + S  +    +    +  + + +  +        
Sbjct: 61  LEGQEEIALLVSGMPGYDPFVDALSEASSTAWHHDMLLSVYDYSDDIELARLILQQLAQR 120

Query: 132 AIQTQDTRHKT 142
                      
Sbjct: 121 HCAGVIFASPV 131


>gi|256851171|ref|ZP_05556560.1| signal peptidase I [Lactobacillus jensenii 27-2-CHN]
 gi|260660595|ref|ZP_05861510.1| signal peptidase I [Lactobacillus jensenii 115-3-CHN]
 gi|282934637|ref|ZP_06339880.1| signal peptidase I [Lactobacillus jensenii 208-1]
 gi|297206036|ref|ZP_06923431.1| possible signal peptidase I [Lactobacillus jensenii JV-V16]
 gi|256616233|gb|EEU21421.1| signal peptidase I [Lactobacillus jensenii 27-2-CHN]
 gi|260548317|gb|EEX24292.1| signal peptidase I [Lactobacillus jensenii 115-3-CHN]
 gi|281301212|gb|EFA93513.1| signal peptidase I [Lactobacillus jensenii 208-1]
 gi|297149162|gb|EFH29460.1| possible signal peptidase I [Lactobacillus jensenii JV-V16]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 141 KTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIK--PRTGDIVAKVLISRRGRSID 194
                SM P +  GD +I      +  GD +++      G +  K ++   G SI 
Sbjct: 45  TVSGPSMQPTFENGDRIIALRHTSLKRGDIVILNAPDEPGALYIKRIVGMPGDSIT 100


>gi|269839064|ref|YP_003323756.1| peptidase S26B, signal peptidase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790794|gb|ACZ42934.1| peptidase S26B, signal peptidase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 488

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 1/84 (1%)

Query: 133 IQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
           +  +         SM P   +GD++++  A   + G     +      V   ++   G  
Sbjct: 25  LGGRTAYVIVNGNSMYPTLHRGDLVLVRRAESYSPGQIAAYRYPDVGTVIHRVVGTAGDR 84

Query: 193 IDLMSLNCCYPVDTVEMSDIEWIA 216
           +     +  +       +  E I 
Sbjct: 85  LIFKGDHNSWTD-GYRPTPAEVIG 107


>gi|218895737|ref|YP_002444148.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228899368|ref|ZP_04063630.1| hypothetical protein bthur0014_5930 [Bacillus thuringiensis IBL
          4222]
 gi|218545936|gb|ACK98330.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228860274|gb|EEN04672.1| hypothetical protein bthur0014_5930 [Bacillus thuringiensis IBL
          4222]
          Length = 72

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44
          I   +  +  R N + S LA K G+   +    ++ 
Sbjct: 3  ILNRVKELRARFNFSQSVLAEKVGVTRQTVAAIEKG 38


>gi|218528364|ref|YP_002419180.1| peptidase S24 and S26 domain protein [Methylobacterium
           chloromethanicum CM4]
 gi|218520667|gb|ACK81252.1| peptidase S24 and S26 domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 151

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 11/126 (8%)

Query: 96  PPSGSGGFFDSGVFPTGNKWNT-VGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRK 153
            P            P  +     + +P    P+             +    SM       
Sbjct: 19  VPLMGPSLCAGFPSPAEDFVENALELPRWLVPN------PPATFLWRISGDSMRDAGIFD 72

Query: 154 GDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTV-EMSDI 212
           GD+  ++ +++   G  ++     G++  K ++   G    L   N   PV  + E++++
Sbjct: 73  GDLACVDRSLKPGHGSVVVAAVD-GEMSIKRMV-VEGNRAHLSFDNAELPVYALEELAEV 130

Query: 213 EWIARI 218
                +
Sbjct: 131 NVWGVV 136


>gi|114569839|ref|YP_756519.1| XRE family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340301|gb|ABI65581.1| transcriptional regulator, XRE family [Maricaulis maris MCS10]
          Length = 136

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           +  +      + + LA+   L   +  + +        R  S E++  + A+ + T  ++
Sbjct: 3   LKTLRRSRGWSQADLAQICDLSERTIQRIESG------RTASLEAVKALAASFDMTAEEI 56

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
                +  R+     +     +   + +   +
Sbjct: 57  QAHLATRARSEPPGRQSSWQAWLWHALAFSIY 88


>gi|91214743|ref|ZP_01251716.1| hypothetical protein P700755_17799 [Psychroflexus torquis ATCC
          700755]
 gi|91187170|gb|EAS73540.1| hypothetical protein P700755_17799 [Psychroflexus torquis ATCC
          700755]
          Length = 104

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           E +  +     L+ + LA+K G+  +S    ++       R  S  S+  I  +   
Sbjct: 18 GEKLSSLRVDAGLSQTELAQKTGMSRSSIAGIEKG------RNFSIASLISISRSLEF 69


>gi|16762390|ref|NP_458007.1| hypothetical protein STY3832 [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|29143878|ref|NP_807220.1| hypothetical protein t3577 [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|25512349|pir||AD0945 probable DNA-binding protein STY3832 [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504694|emb|CAD09582.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29139514|gb|AAO71080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I  ++ R  ++  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A 
Sbjct: 14 IARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVAL 65


>gi|323359481|ref|YP_004225877.1| hypothetical protein MTES_3033 [Microbacterium testaceum StLB037]
 gi|323275852|dbj|BAJ75997.1| hypothetical protein MTES_3033 [Microbacterium testaceum StLB037]
          Length = 1354

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          +   I        L  + LAR  G+   + +  +R     R
Sbjct: 5  LGTLIRVSRTATGLDQAELARAMGVGQQTVSAWERGRSRPR 45


>gi|312793726|ref|YP_004026649.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312180866|gb|ADQ41036.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 85

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 22/45 (48%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          + I   ++++  + N++ S L    G++P   ++ +R   +   +
Sbjct: 10 EVIMTKLEQLRRQKNISQSKLGLAIGVNPNIISQIERGWRKPYPK 54


>gi|296282095|ref|ZP_06860093.1| transcriptional regulator, Cro/CI family protein [Citromicrobium
          bathyomarinum JL354]
          Length = 63

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            +  +    N +   LA + G+   S N  +    +     PS    F+I     
Sbjct: 3  NRLKVLRAERNWSQQALAEELGVSRQSVNAIETGRYD-----PSLPLAFQIAEVFG 53


>gi|256389455|ref|YP_003111019.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256355681|gb|ACU69178.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 792

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 20/45 (44%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRN 50
          +++I   +    ER +L+ + LA +  +  + + + +R       
Sbjct: 15 NREIAAQLKSWRERRHLSQANLADRINVSRSHYTRLERGERPLHP 59


>gi|255024878|ref|ZP_05296864.1| helix-turn-helix domain protein [Listeria monocytogenes FSL
          J1-208]
          Length = 130

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLD-PTSFNKSKRFGIEGRNRWPSTESIF 59
          M   S+      +  + E+   + +  AR+ GL  P+++   +        R P  E + 
Sbjct: 1  MPKLSN-----RLTLLREKQGWSKAETARRLGLSAPSTYGNWEYGI-----REPDLEMVT 50

Query: 60 KIL 62
          +I 
Sbjct: 51 QIA 53


>gi|228934608|ref|ZP_04097442.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825001|gb|EEM70799.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/196 (10%), Positives = 54/196 (27%), Gaps = 15/196 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S  KI   I    +   +T   LA   G+   S +K +         +P    +  
Sbjct: 1   MKEISIHKI---IADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPL 52

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           + +  N +I +L+       +   K         F                   ++   +
Sbjct: 53  LASYFNISIDELISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPL 112

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
                    I  +              +    +  + + +   + +    L+ +  +   
Sbjct: 113 ------LLQIGILFINHHMLTEDTDRRI-EILEEAMNLFSRVQEESDDVSLVKEAVSFQA 165

Query: 181 VAKVLISRRGRSIDLM 196
              +++++    + L+
Sbjct: 166 TCYLILNKPNEVLQLL 181


>gi|255505928|ref|ZP_05348929.3| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
 gi|255265073|gb|EET58278.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
          Length = 112

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 7/83 (8%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             ++ +   I  +    N T   +A + G+    + + +           + + +  I 
Sbjct: 1  MVMNELLGGRIKALRNAKNFTQEQIADRIGVSRQKYARIENGAN-----SITLDILSAIA 55

Query: 63 AATNETICQLLDLPFSDGRTTEK 85
             + T+  +  +         +
Sbjct: 56 EVLDVTVGDITKVLDEKPAVAYR 78


>gi|220913618|ref|YP_002488927.1| XRE family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219860496|gb|ACL40838.1| transcriptional regulator, XRE family [Arthrobacter
          chlorophenolicus A6]
          Length = 67

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 13/40 (32%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I   I R  +   +T   LA   G  P + +  +      
Sbjct: 7  IGAGIRRARKDAGITQRTLADLTGTSPRTIHAIETGTGNP 46


>gi|149178990|ref|ZP_01857565.1| DNA-binding protein [Planctomyces maris DSM 8797]
 gi|148842189|gb|EDL56577.1| DNA-binding protein [Planctomyces maris DSM 8797]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 3/41 (7%), Positives = 16/41 (39%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          ++ + +  + +    +   L+   G+  +  ++ +R     
Sbjct: 26 QLSQRVRELRKERGWSLDSLSAACGVSRSMLSQIERGEANP 66


>gi|116326508|ref|YP_794188.1| XRE family transcriptional regulator [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|116098007|gb|ABJ63157.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
          Length = 204

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          +++  +   H L+ + LARK  + P + +  +          P  E I KI    + T+ 
Sbjct: 5  KSLKELRLLHELSQTQLARKLNVSPKTISNWENERN-----LPDIELIIKISKVLDVTLD 59

Query: 71 Q 71
          +
Sbjct: 60 E 60


>gi|323487870|ref|ZP_08093128.1| immunity repressor protein [Planococcus donghaensis MPA1U2]
 gi|323398604|gb|EGA91392.1| immunity repressor protein [Planococcus donghaensis MPA1U2]
          Length = 114

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + +  + ++  +T   LAR  G    S +  +          PS E +  I    N +
Sbjct: 4  KRLKLVRQKRKMTQEELARTLGTTKGSISNYENGRS-----SPSVEVLVNIANILNSS 56


>gi|314933295|ref|ZP_07840660.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae
          C87]
 gi|313653445|gb|EFS17202.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae
          C87]
          Length = 179

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   +  +    NLT   LA +  L     ++ +          PS E+   IL     
Sbjct: 2  NIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHA-----SPSMETFLNILEVLGT 56

Query: 68 TICQLLD 74
          +      
Sbjct: 57 SASDFFQ 63


>gi|255531981|ref|YP_003092353.1| helix-turn-helix domain-containing protein [Pedobacter heparinus
           DSM 2366]
 gi|255344965|gb|ACU04291.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366]
          Length = 327

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 6/108 (5%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             + K I   I    ++ N++   LA++  + P +  K +R         P   +  ++ 
Sbjct: 1   MLNTKMIGNKITEARKKINISQVQLAQRLFISPQAVGKWERGES-----MPDIITFNRLS 55

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
                 +    +   S     +    +     F  + SGG +    F 
Sbjct: 56  EILGVDLNYFSESFQSGAMPIKLPSGKQDK-KFSWNMSGGNWVDADFS 102


>gi|225017175|ref|ZP_03706367.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum
          DSM 5476]
 gi|224950094|gb|EEG31303.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum
          DSM 5476]
          Length = 131

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +++I + +    E+  LT   +A + G+  ++  + +  GIE + + P   +I  +L   
Sbjct: 3  NREIGKRMKLAREQSGLTLQAVADRVGVAASTVQRYEAGGIE-KLKLPVLNAIADVLGVD 61

Query: 66 NET 68
             
Sbjct: 62 PGW 64


>gi|224539861|ref|ZP_03680400.1| hypothetical protein BACCELL_04771 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518510|gb|EEF87615.1| hypothetical protein BACCELL_04771 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 103

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
          + E +     +  LT   LA + G   T  ++ +    +
Sbjct: 45 LAERLKEERLKAGLTQEQLAERIGTKKTYISRIENGKAD 83


>gi|210635363|ref|ZP_03298499.1| hypothetical protein COLSTE_02430 [Collinsella stercoris DSM 13279]
 gi|210158426|gb|EEA89397.1| hypothetical protein COLSTE_02430 [Collinsella stercoris DSM 13279]
          Length = 224

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE-GRNRWPSTESIFKILAA 64
            + +M +R  L+   LA +AG+   S    ++   +  R +  S   + ++L  
Sbjct: 152 RLAKMRKRLGLSQRELAYRAGVSLRSIQMYEQRNKDINRAQVGSVAELARVLHC 205


>gi|85707731|ref|ZP_01038797.1| putative DNA binding protein [Erythrobacter sp. NAP1]
 gi|85689265|gb|EAQ29268.1| putative DNA binding protein [Erythrobacter sp. NAP1]
          Length = 68

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 5/71 (7%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
            +    E    +   LAR+ G+   + N  +    +     PS     ++      ++ 
Sbjct: 3  NRLKYHREAEGWSQGELARRLGVSRQTINAVETDKYD-----PSLPLALRMAKLFGVSVP 57

Query: 71 QLLDLPFSDGR 81
           L    +    
Sbjct: 58 DLFIDHWEPDA 68


>gi|83943150|ref|ZP_00955610.1| umuD protein [Sulfitobacter sp. EE-36]
 gi|83846158|gb|EAP84035.1| umuD protein [Sulfitobacter sp. EE-36]
          Length = 102

 Score = 42.4 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 134 QTQDTRHKTQDTSMLPL-YRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRS 192
            +     + +   +     R GDI+ ++ A +   G R ++    G + AK+L  +RG  
Sbjct: 8   PSSTFWWRVEGDCLWDAGIRDGDIIAVDRAGKRRIG-RAVLAVVDGAVTAKIL-RKRGDR 65

Query: 193 IDLMSLN--CCYPVDTVEMSDIEW--IARIL 219
             L   N    +P   +      W  IA ++
Sbjct: 66  YYLAPANSQEQFPDVELTEDSEIWGVIAGVV 96


>gi|328951790|ref|YP_004369124.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM
          11109]
 gi|328452114|gb|AEB07943.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM
          11109]
          Length = 717

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S   I +A+  + E   ++ + LA++     +  ++ +   I         + I K
Sbjct: 1  MEMTS---IRKALSSLREEAGISQAELAKRLPFTASRISRLESGEIAMTEED--AQEIAK 55

Query: 61 ILAATNETICQLLDLPFS 78
           +                
Sbjct: 56 AIGTPKANDFNDYLSQDW 73


>gi|325968839|ref|YP_004245031.1| XRE family transcriptional regulator [Vulcanisaeta moutnovskia
           768-28]
 gi|323708042|gb|ADY01529.1| XRE family transcriptional regulator [Vulcanisaeta moutnovskia
           768-28]
          Length = 282

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
           + ++ E   ++   LA+  G+   +  + +R  IE   R 
Sbjct: 135 LRKLRENRGMSLGDLAKMLGVTRRTIYEYERGSIEASERT 174


>gi|319787830|ref|YP_004147305.1| XRE family transcriptional regulator [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317466342|gb|ADV28074.1| transcriptional regulator, XRE family [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 73

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 13 IDRMAERHN-LTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
          I R+      +T   LA   G+   +    +          PS E  F+I  A    +  
Sbjct: 12 IRRLRFERGEMTQQALADACGVTRQTIIALEAGRY-----APSLELAFRIARAFGVGVED 66

Query: 72 LLDLPFS 78
          +      
Sbjct: 67 VFHWREP 73


>gi|319782137|ref|YP_004141613.1| hypothetical protein Mesci_2417 [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gi|317168025|gb|ADV11563.1| Protein of unknown function DUF2083,transcriptional regulator
          [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 480

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
             I R+     LT + +A   G+ P+  N  +R       R  + + I ++ +      
Sbjct: 9  GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQ-----RPLTVQLILRLASVYKVDP 63

Query: 70 CQ 71
           +
Sbjct: 64 HE 65


>gi|317129456|ref|YP_004095738.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474404|gb|ADU31007.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 4/152 (2%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           K+    +  +    NLT   L +++G+  +  +K +     G+   PS + + K+    +
Sbjct: 4   KEFGLYLKSLRIEKNLTMRELDKRSGVSHSYISKME----SGQKGIPSPDILRKLAEPLS 59

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSP 126
               +L+               +                  +   G  +  +    I   
Sbjct: 60  VRYQKLMIKAGHFSEDEYTSINDYEARIEELDTKLENVLDDLSTNGEFYYVLIEDLIPIF 119

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
           ++  +  +  D  +KT D  +       D   
Sbjct: 120 NDDFFTGREHDNFNKTFDYFLEEKANDPDFNY 151


>gi|227499690|ref|ZP_03929793.1| hypothetical protein HMPREF0077_0428 [Anaerococcus tetradius ATCC
          35098]
 gi|227218287|gb|EEI83546.1| hypothetical protein HMPREF0077_0428 [Anaerococcus tetradius ATCC
          35098]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            I  +    N++   LA+  G+   + + ++           S  +  KI    
Sbjct: 7  NNIRVLRAMKNVSQKELAKAVGVSQQTISTAENTSR------MSLTTAKKIADYF 55


>gi|163854504|ref|YP_001628802.1| putative DNA-binding protein [Bordetella petrii DSM 12804]
 gi|163258232|emb|CAP40531.1| putative DNA-binding protein [Bordetella petrii]
          Length = 136

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 7   KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
           +   + +     R   T   LA  +GL  ++    +          P++ ++ K+  A +
Sbjct: 8   ETFGQRVRGARLRFGWTQKELASVSGLTQSAIGNYESGQRT----EPTSAALIKLAQALD 63

Query: 67  ETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
            T   L     +    ++K    +P        + G+  
Sbjct: 64  VTPEWLRQGKEAKDGPSKKSLSYMPKARQQKGLAAGWPF 102


>gi|27366645|ref|NP_762172.1| putative transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|320158536|ref|YP_004190914.1| putative transcriptional regulator [Vibrio vulnificus MO6-24/O]
 gi|27358211|gb|AAO07162.1|AE016808_182 Predicted transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|319933848|gb|ADV88711.1| predicted transcriptional regulator [Vibrio vulnificus MO6-24/O]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 13/177 (7%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I  +  R  +T    +++ GL  ++ +K +   I      P+ +++ K+      
Sbjct: 27  KLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLKI 81

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + QL + P     T  +                              N   +P     H
Sbjct: 82  DMPQLFEPPRKKVATGRRDITLAGQ----GKPHPTQTYEHELLATQLSNKKMMPFKSVVH 137

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVN--CGDRLLIKPRTGDIVA 182
              +         +      L +              V    GD +      G ++ 
Sbjct: 138 ARTFEEYGD--WVRHDGEEFLLILSGAVQFYSEFYEPVVLSEGDSVYYDANMGHMLV 192


>gi|148261636|ref|YP_001235763.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326405126|ref|YP_004285208.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|146403317|gb|ABQ31844.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5]
 gi|325051988|dbj|BAJ82326.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 110

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 1  MTSFSH---KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTES 57
          M        + + + I  +   +NLT    A + G+  ++  + +     G+ R  + E 
Sbjct: 1  MAPKKQTPPESVGQRIRALRLANNLTQDEFAAQLGVSRSAIAQWETDRA-GQVRE-NLER 58

Query: 58 IFKIL 62
          I K+L
Sbjct: 59 ISKVL 63


>gi|148262951|ref|YP_001229657.1| cupin 2 domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146396451|gb|ABQ25084.1| transcriptional regulator, XRE family [Geobacter uraniireducens
           Rf4]
          Length = 196

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 47/182 (25%), Gaps = 21/182 (11%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ E   ++ +   LT   LA   GL     ++ +   +      P   ++ KI      
Sbjct: 12  KLGEKARKLRQERRLTLQELAELTGLSKPLLSQIENDQVT-----PPIATLLKIAKGLKV 66

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT-------VGV 120
            I    +      +    +    P      +GS         P              V  
Sbjct: 67  GIHYFFEEEGDRQKFVLTRGGSGPASKR-RAGSDIVQGYLYRPLAPGIRHKQIEPFLVAF 125

Query: 121 PEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDI 180
            E     +  Y+ +  +  +  +       +  G  ++      +  GD +         
Sbjct: 126 EETAWDDSRFYSHEGVEFIYLLEG---ELEFHYGQEIM-----TLQPGDSIYYDSSEPHG 177

Query: 181 VA 182
             
Sbjct: 178 YV 179


>gi|330982323|gb|EGH80426.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 55

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
             +  + E + L+   LAR++G+   + +  ++  +      PS  S+ K+L 
Sbjct: 4  GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRV-----SPSISSLKKLLE 52


>gi|325681181|ref|ZP_08160711.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324107103|gb|EGC01389.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 70

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  M  R  +  + + + AG    + ++ +R         PS     K+    N  +  +
Sbjct: 7  LKEMRARLGVNQAEMGKLAGTSRQTISQIERGDY-----SPSVTLALKLAKICNVKVEDI 61

Query: 73 LDLPFSDGR 81
           +    +  
Sbjct: 62 FEYEEDNNE 70


>gi|262282933|ref|ZP_06060700.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261185|gb|EEY79884.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA]
          Length = 96

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          + + I  + + ++LT    AR  G+   S ++ +           STE I  I    N +
Sbjct: 15 VGDNIKSLRKTNDLTQPEFARIVGISRNSLSRYENGTSP-----ISTELIDTICQKFNVS 69

Query: 69 I 69
           
Sbjct: 70 Y 70


>gi|253578754|ref|ZP_04856025.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849697|gb|EES77656.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E I       N+T   LA+ A +  ++  K +        R P  E + KI  A   ++
Sbjct: 4  GEIIKYFRLARNMTQEQLAQDAEISFSTLRKYE-----ANERNPKYEQLSKIADALGISV 58

Query: 70 CQLLDLP 76
             +D  
Sbjct: 59 NLFMDFE 65


>gi|241759657|ref|ZP_04757758.1| Helix-turn-helix [Neisseria flavescens SK114]
 gi|241320029|gb|EER56410.1| Helix-turn-helix [Neisseria flavescens SK114]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I  AI     +   T + LA  +GL  +     ++       R P+  ++ KI  A   
Sbjct: 2  NIGRAIKLCRNQKGFTKTKLAENSGLSVSYLTLLEQG-----KRDPNLSTLEKICLALQI 56

Query: 68 T 68
           
Sbjct: 57 P 57


>gi|169350310|ref|ZP_02867248.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552]
 gi|169293093|gb|EDS75226.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552]
          Length = 185

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 50/218 (22%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
            I   I  + + + LT   LA ++ L     ++ +R         PS  ++  IL A   
Sbjct: 10  DIGGKIKMLRQANGLTLEELANRSELTKGFLSQLERDLT-----SPSITTLEDILEALGT 64

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + +              ++       F  +    +  S + P   K +   +    +P 
Sbjct: 65  NLQE-------FFSEKPAEQIVFKKDDFFVNEQDDYIISYIIPNAQKNDMEPILIEIAPG 117

Query: 128 NGIYAI---QTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKV 184
               A+   + Q+  +  Q    L                      +       + V K 
Sbjct: 118 KQSMALDPHEGQEFGYVVQGKVKL----------------------VYG---ENEFVLKK 152

Query: 185 LISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWAS 222
                G +  L  L   Y    V  S+ +  A+++W S
Sbjct: 153 -----GETFYLKGLVSHY---LVNNSETK--AKVIWVS 180


>gi|167751674|ref|ZP_02423801.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702]
 gi|167655482|gb|EDR99611.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702]
          Length = 271

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I   I    +   LT   LA K  +   + +K +          P  E + +I A    
Sbjct: 2  NIGNVISEKRKALGLTQQALAEKLHVSFQAISKWENGTS-----CPDIELLPQIAAILKT 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLY 94
          TI  LL  P       +K+       +
Sbjct: 57 TIDSLLGYPSQSVTDYDKRYGNEEYYW 83


>gi|161617166|ref|YP_001591131.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167551474|ref|ZP_02345229.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|167991568|ref|ZP_02572667.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232973|ref|ZP_02658031.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168237658|ref|ZP_02662716.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|168244212|ref|ZP_02669144.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|168263065|ref|ZP_02685038.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168467376|ref|ZP_02701213.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168821618|ref|ZP_02833618.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|194446538|ref|YP_002043263.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194451910|ref|YP_002048044.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194468718|ref|ZP_03074702.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194736659|ref|YP_002116963.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          CVM19633]
 gi|197251740|ref|YP_002148970.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197263714|ref|ZP_03163788.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|198244893|ref|YP_002217966.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200388606|ref|ZP_03215218.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204930179|ref|ZP_03221156.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|224585852|ref|YP_002639651.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|238912186|ref|ZP_04656023.1| hypothetical protein SentesTe_13791 [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|161366530|gb|ABX70298.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194405201|gb|ACF65423.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194410214|gb|ACF70433.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194455082|gb|EDX43921.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194712161|gb|ACF91382.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|195630241|gb|EDX48881.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197215443|gb|ACH52840.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197241969|gb|EDY24589.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197289380|gb|EDY28745.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|197939409|gb|ACH76742.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199605704|gb|EDZ04249.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204320583|gb|EDZ05785.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205323777|gb|EDZ11616.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205330070|gb|EDZ16834.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332759|gb|EDZ19523.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205336928|gb|EDZ23692.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205341774|gb|EDZ28538.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205348305|gb|EDZ34936.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|224470380|gb|ACN48210.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|312915157|dbj|BAJ39131.1| hypothetical protein STMDT12_C41880 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|321225331|gb|EFX50389.1| Putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|326625758|gb|EGE32103.1| Helix-turn-helix type 3 [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A +  
Sbjct: 8  IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVALDIP 62

Query: 69 I 69
           
Sbjct: 63 F 63


>gi|172062153|ref|YP_001809804.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171994670|gb|ACB65588.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +  ++ E I R+     LT   L+R AG+  +  ++ +R     
Sbjct: 22 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANP 65


>gi|3219886|sp|Q57720|Y272_METJA RecName: Full=Uncharacterized HTH-type transcriptional regulator
          MJ0272
          Length = 66

 Score = 42.4 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +      HNLT   LA+K G+   +    ++   +     PS +  FKI       I  +
Sbjct: 5  LKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYD-----PSLKLAFKIAKFFGVKIEDI 59

Query: 73 LDLPF 77
               
Sbjct: 60 FIYED 64


>gi|305664273|ref|YP_003860561.1| transcriptional regulator, XRE family [Ignisphaera aggregans DSM
          17230]
 gi|304378842|gb|ADM28681.1| transcriptional regulator, XRE family [Ignisphaera aggregans DSM
          17230]
          Length = 235

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS--TESIFKILAATNET 68
          +A+ +  E  N+T S LA+K  + P+  +  +R   +   ++     E++ KI       
Sbjct: 24 QALRKWREIFNVTQSDLAKKMDIAPSVLSDYERGRRQPGTKFIKKFVEALIKIDEERGYP 83


>gi|292490247|ref|YP_003525686.1| hypothetical protein Nhal_0078 [Nitrosococcus halophilus Nc4]
 gi|291578842|gb|ADE13299.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4]
          Length = 167

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 6   HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE 47
           H +  + +  +  R   + + LA++ G       + +R    
Sbjct: 88  HGEEGDTVRTLRLRKGWSQARLAKELGTSQPHIARIERGTEN 129


>gi|316932268|ref|YP_004107250.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gi|315599982|gb|ADU42517.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 72

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M     K +     R+     LT   +  ++G      +  +R       R P+  ++++
Sbjct: 1  MDM--RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERG-----RRNPTVITLYE 53

Query: 61 ILAATNETICQLLDLPFS 78
          +  A   +  +L+     
Sbjct: 54 LSQALGVSHVELVQPDDQ 71


>gi|265750635|ref|ZP_06086698.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237531|gb|EEZ22981.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 77

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGR 49
          M +F  ++I   I+   ++ N+T + LA K G + +  ++ +    E +
Sbjct: 11 MNAFFTEQI---IEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPK 56


>gi|257791280|ref|YP_003181886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257475177|gb|ACV55497.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 139

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 5/57 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
             I  + E   +T   LA +AG    +    +        R     ++  I  A  
Sbjct: 4  GSRIRALRESRGMTQRQLAERAGCTDAAIRNYEAG-----RRALKGSALDAIAGALG 55


>gi|256544850|ref|ZP_05472222.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC
          51170]
 gi|256399739|gb|EEU13344.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC
          51170]
          Length = 78

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
            I++  +   L+   L +K G+  TS NK +          PS ++   I  A 
Sbjct: 3  NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTI-----PSLKTANDIANAL 52


>gi|168701387|ref|ZP_02733664.1| hypothetical protein GobsU_17815 [Gemmata obscuriglobus UQM 2246]
          Length = 128

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K+I   +  +     L+   +A KA L  +   K ++     R   P   ++  +  A  
Sbjct: 5  KQIAYRLQTLRAAAGLSQEAIAEKADLSLSLVAKMEQ----ARKADPRASTLIALAGALG 60

Query: 67 ETICQLLDLPFSDGRTTEKK 86
              +L++            
Sbjct: 61 VRPGELIEDLVDPPEGAFPS 80


>gi|125718510|ref|YP_001035643.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK36]
 gi|125498427|gb|ABN45093.1| Transcriptional regulator, XRE family, putative [Streptococcus
          sanguinis SK36]
          Length = 197

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          ++ + I    +  NL+   LA    +   S +  +R          +   + K+  
Sbjct: 2  QVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGAT--YPDIQNLLLLSKVFE 55


>gi|83648919|ref|YP_437354.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83636962|gb|ABC32929.1| predicted transcriptional regulator [Hahella chejuensis KCTC
          2396]
          Length = 106

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          +   I  + ++  LT   LA K G   +   + +  G++ R        I K L  T
Sbjct: 5  LGAKIKELRKKKGLTLEQLAEKTGSGKSYIWEIENKGVK-RPSAEKLTLIAKALDVT 60


>gi|325570955|ref|ZP_08146574.1| signal peptidase IB [Enterococcus casseliflavus ATCC 12755]
 gi|325156281|gb|EGC68465.1| signal peptidase IB [Enterococcus casseliflavus ATCC 12755]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
              +  SM    ++GD++++     +   D ++ +   G    K +I   G S+
Sbjct: 45  VPVEGNSMEGTLKQGDMVVIEKISPIQRFDVVVFQLPDGSTYIKRVIGLPGESV 98


>gi|323485286|ref|ZP_08090635.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum
          WAL-14163]
 gi|323401322|gb|EGA93671.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum
          WAL-14163]
          Length = 141

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLD----PTSFNKSKRFGIEGRNRWPSTESIFKIL 62
          K +   I +  +   L+   LA   G +     ++ +K +    +       T  +  I 
Sbjct: 10 KILGNNIKKYRDDKGLSQEALANLCGWNTDNARSTISKIESGTND-----VPTSKLKIIA 64

Query: 63 AATNETICQLLD 74
               ++C L++
Sbjct: 65 EKLGVSVCDLMN 76


>gi|313898661|ref|ZP_07832196.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956545|gb|EFR38178.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 110

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  + ++H L  + LA+KA +  ++ N   +     +N  P+  ++  +L A + T+
Sbjct: 4  LEKLKLLMKQHGLNENQLAKKANVPQSTINSLFQ-----KNNLPTISTLEALLEALDMTL 58

Query: 70 CQLLDLPFSDGRTTEKKEKEIPLLYF 95
           +         +   +++  +    F
Sbjct: 59 SEFFYDDALMKKHQLEEQNLMSKWNF 84


>gi|290890757|ref|ZP_06553824.1| hypothetical protein AWRIB429_1214 [Oenococcus oeni AWRIB429]
 gi|290479529|gb|EFD88186.1| hypothetical protein AWRIB429_1214 [Oenococcus oeni AWRIB429]
          Length = 366

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 52/170 (30%), Gaps = 12/170 (7%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKA----GLDPTSFNKSKRFGIEGRNRWPSTE 56
           M     K +   + ++ E   L+   L + A    G +  +  ++          +PS +
Sbjct: 15  MIKPDKKTLAAHLKQLRENKRLSQESLGKIATDNEGFNVPNVRRTVSDWENPDKGFPSAD 74

Query: 57  SIFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWN 116
            I +I      T  +LL    SD        +++ +     + +  F   G +   +K +
Sbjct: 75  KIARICVFFQITPTELLFEKDSDMWELVLSNRDLSIKKLSETVNKFFEKFGFYDVLHKID 134

Query: 117 TVGVPEIRSPHNGIYAIQTQDTRHKTQDT--------SMLPLYRKGDILI 158
            V +     P      ++                   +  P     + L+
Sbjct: 135 DVELSHKIFPKLSKRNLEDILYVLIFDGELSSLRKEKTNYPKISNQEFLL 184


>gi|239820588|ref|YP_002947773.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805441|gb|ACS22507.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 67

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +  AI  + + H ++   LA ++ +D +  +  +R         P   ++ +I A    +
Sbjct: 3  LGTAIKALRKTHGISQEELAHRSHIDRSYMSSIERGMQN-----PGVMTVVQIAAGLGVS 57

Query: 69 ICQ 71
          + +
Sbjct: 58 VAE 60


>gi|228931333|ref|ZP_04094262.1| Transcription regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228828336|gb|EEM74042.1| Transcription regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 135

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          KI ++I    +R+NL+   LA K G+   + +K ++         P  E++  +    N 
Sbjct: 2  KISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGT-----PDIENLILLSDEMNI 56

Query: 68 TICQLLDLPFSDGRTTEKKEKEIPLLYFP 96
          ++  L+    S        EK I +    
Sbjct: 57 SLDNLIKGNNSIKERIMNNEKAIKIHLLV 85


>gi|210623409|ref|ZP_03293788.1| hypothetical protein CLOHIR_01738 [Clostridium hiranonis DSM
          13275]
 gi|210153604|gb|EEA84610.1| hypothetical protein CLOHIR_01738 [Clostridium hiranonis DSM
          13275]
          Length = 77

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 1  MTS-FSHKKIWE-AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          M     +  I +  +       +L+ S LA   G+   + +  +        +
Sbjct: 1  MKKNMKNDLILKNRLKVARAEKSLSQSELAEMIGVSRNTISSIETGQFNPTAK 53


>gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC
          27756]
 gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC
          27756]
          Length = 126

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M +++       I +      LT   L    G+  ++  K +          P  E++ K
Sbjct: 1  MPTYTGD----MIRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQN-----PKIETLQK 51

Query: 61 ILAAT 65
          I  A 
Sbjct: 52 IADAL 56


>gi|57234657|ref|YP_181292.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
 gi|57225105|gb|AAW40162.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
          Length = 67

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   I  +  R+NLT + LA   G+   +    ++         PS     K+  A +  
Sbjct: 3  LRTRIKELRARYNLTQAELAETVGVSRQTMLYLEKGTYN-----PSLILAHKVAKALHAD 57

Query: 69 ICQLLDLPF 77
          I  +  L  
Sbjct: 58 IDDVFILRD 66


>gi|329948033|ref|ZP_08294934.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon
          170 str. F0386]
 gi|328523172|gb|EGF50273.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon
          170 str. F0386]
          Length = 62

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          +  + E   LT + L    G+   S N  ++   +     PS      I       + ++
Sbjct: 5  VRSLREARGLTQAQLGAALGVSRQSINSIEKGKYD-----PSLPLAIAIARYFETAVEEI 59

Query: 73 LD 74
            
Sbjct: 60 FH 61


>gi|325964339|ref|YP_004242245.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470426|gb|ADX74111.1| putative transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 67

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 13/40 (32%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          I  +I R  +   +T   LA   G    + +  +      
Sbjct: 7  IGASIRRARKEAGITQGTLADLVGTSARTIHAIETGTGNP 46


>gi|322805848|emb|CBZ03413.1| DNA-binding protein; possible transcriptional regulator
          [Clostridium botulinum H04402 065]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I E I R+ +   +T   LA   G+   + +K +    
Sbjct: 6  IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGAS 43


>gi|322613196|gb|EFY10140.1| hypothetical protein SEEM315_17865 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322619177|gb|EFY16060.1| hypothetical protein SEEM971_20829 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322626043|gb|EFY22855.1| hypothetical protein SEEM973_21760 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322626497|gb|EFY23303.1| hypothetical protein SEEM974_14708 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322632390|gb|EFY29138.1| hypothetical protein SEEM201_18692 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322635128|gb|EFY31849.1| hypothetical protein SEEM202_17461 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322642669|gb|EFY39259.1| hypothetical protein SEEM954_08582 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322647958|gb|EFY44430.1| hypothetical protein SEEM054_15121 [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650708|gb|EFY47109.1| hypothetical protein SEEM675_00280 [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322652891|gb|EFY49228.1| hypothetical protein SEEM965_09839 [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657206|gb|EFY53486.1| hypothetical protein SEEM19N_14452 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322662306|gb|EFY58521.1| hypothetical protein SEEM801_06228 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322666841|gb|EFY63017.1| hypothetical protein SEEM507_05993 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672111|gb|EFY68226.1| hypothetical protein SEEM877_04625 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322675833|gb|EFY71905.1| hypothetical protein SEEM867_04673 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322681751|gb|EFY77777.1| hypothetical protein SEEM180_13742 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322684054|gb|EFY80063.1| hypothetical protein SEEM600_14844 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|323193326|gb|EFZ78541.1| hypothetical protein SEEM581_19668 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323197683|gb|EFZ82816.1| hypothetical protein SEEM501_14961 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323200743|gb|EFZ85814.1| hypothetical protein SEEM460_14930 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323207252|gb|EFZ92204.1| hypothetical protein SEEM020_16655 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323211454|gb|EFZ96295.1| hypothetical protein SEEM6152_00405 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323218500|gb|EGA03208.1| hypothetical protein SEEM0077_08820 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323221017|gb|EGA05449.1| hypothetical protein SEEM0047_14034 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323225993|gb|EGA10212.1| hypothetical protein SEEM0055_20581 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323231673|gb|EGA15785.1| hypothetical protein SEEM0052_06395 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323236078|gb|EGA20156.1| hypothetical protein SEEM3312_17409 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323239500|gb|EGA23549.1| hypothetical protein SEEM5258_18857 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323243906|gb|EGA27917.1| hypothetical protein SEEM1156_17632 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323249269|gb|EGA33186.1| hypothetical protein SEEM9199_02187 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323250488|gb|EGA34371.1| hypothetical protein SEEM8282_08477 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323258942|gb|EGA42594.1| hypothetical protein SEEM8283_01562 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323260187|gb|EGA43810.1| hypothetical protein SEEM8284_01027 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323265306|gb|EGA48803.1| hypothetical protein SEEM8285_17297 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323270528|gb|EGA53974.1| hypothetical protein SEEM8287_12833 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I  ++ R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A +  
Sbjct: 8  IARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVALDIP 62

Query: 69 I 69
           
Sbjct: 63 F 63


>gi|282852578|ref|ZP_06261920.1| DNA-binding protein [Lactobacillus gasseri 224-1]
 gi|282556320|gb|EFB61940.1| DNA-binding protein [Lactobacillus gasseri 224-1]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          ++ + I  + +++NL+  GLA K  +   + +K +          P  E I  +     
Sbjct: 2  RLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSI-----PDIEKIVNLSKLFG 55


>gi|262402586|ref|ZP_06079147.1| putative transcriptional regulator [Vibrio sp. RC586]
 gi|262351368|gb|EEZ00501.1| putative transcriptional regulator [Vibrio sp. RC586]
          Length = 102

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 6  HKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          HK   I   +    ++  +T   L  + G++P+S +       +GR   P   ++ ++  
Sbjct: 2  HKDNPIPTRLKEARKKAGITQKDLGIRIGMEPSSASGRMNHYEKGR-HVPDLGTLERMAE 60

Query: 64 ATNETICQLLDLPF 77
            N  +        
Sbjct: 61 ELNVPLNYFFCRNE 74


>gi|258653312|ref|YP_003202468.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258556537|gb|ACV79479.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 80

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          ++  +  +     +T   LA   G+   +    +R         PS     +I       
Sbjct: 5  LFNRLAVLRAERGITRRQLAEAVGVHYQTVGYLERGEY-----SPSLVLALRIAEYFEMP 59

Query: 69 ICQLL 73
          + Q+ 
Sbjct: 60 VEQVF 64


>gi|229100213|ref|ZP_04231113.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          Rock3-29]
 gi|228683255|gb|EEL37233.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          Rock3-29]
          Length = 114

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + ++ +  +LT S LA    L  +     +    +     P  +++  I +  N +
Sbjct: 5  GQTLKQLRKSRDLTQSELAEILNLSQSQIKNWETGRFQ-----PDIQTLASIASFFNVS 58


>gi|225012792|ref|ZP_03703226.1| plasmid maintenance system antidote protein, XRE family
          [Flavobacteria bacterium MS024-2A]
 gi|225003066|gb|EEG41042.1| plasmid maintenance system antidote protein, XRE family
          [Flavobacteria bacterium MS024-2A]
          Length = 136

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
            +     + ++ + E ++L  +  A K  +  +S +         +   PS E I KI 
Sbjct: 1  MLNIDHFLKRLESLMENNHLNATAFAEKIDVQRSSVSHILS-----KRNKPSLEFILKIN 55

Query: 63 AATNETICQLLDLPFSDGRTTEKKEKEIPLL 93
              E   + L L     +       +  + 
Sbjct: 56 EHFEEADLEWLLLGEKQDQEKHPTLLKEKVE 86


>gi|194335906|ref|YP_002017700.1| transcriptional regulator, XRE family [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308383|gb|ACF43083.1| transcriptional regulator, XRE family [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 91

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          +I E + +  +R  LT   LA K     ++ ++ +    + R    S
Sbjct: 30 RIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSEDIRLSTLS 76


>gi|189465130|ref|ZP_03013915.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM
           17393]
 gi|218131566|ref|ZP_03460370.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697]
 gi|189437404|gb|EDV06389.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM
           17393]
 gi|217986235|gb|EEC52573.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697]
          Length = 117

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 6/106 (5%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M +  ++ I E + ++ E    T   +A+  G++ ++++  +     G  R    + + +
Sbjct: 1   MKTI-NQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYE-----GGTREVPYDILER 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
           +          L +               I  L          F  
Sbjct: 55  LSNLFGCEPFILFEDNIQADNEIMATAFRISDLEDGDLKEIANFKD 100


>gi|170756399|ref|YP_001781169.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169121611|gb|ACA45447.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I E I R+ +   +T   LA   G+   + +K +    
Sbjct: 6  IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGAS 43


>gi|153941295|ref|YP_001390879.1| putative DNA-binding protein [Clostridium botulinum F str.
          Langeland]
 gi|152937191|gb|ABS42689.1| putative DNA-binding protein [Clostridium botulinum F str.
          Langeland]
 gi|295318944|gb|ADF99321.1| putative DNA-binding protein [Clostridium botulinum F str.
          230613]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
          I E I R+ +   +T   LA   G+   + +K +    
Sbjct: 6  IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGAS 43


>gi|9632965|ref|NP_049993.1| cI-like repressor [Streptococcus phage Sfi21]
 gi|5524046|gb|AAD44098.1|AF115103_28 orf127 gp [Streptococcus phage Sfi21]
 gi|2292761|emb|CAA64934.1| cI-like repressor [Streptococcus phage Sfi21]
          Length = 127

 Score = 42.4 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 20/44 (45%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
            ++ +I   I    +  +++ S LA KAG+  ++ ++      
Sbjct: 12 MRNNDEIISLIKSYLDNSSMSMSELANKAGISKSTLSRYLSGSR 55


>gi|330996840|ref|ZP_08320709.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila
           YIT 11841]
 gi|329572283|gb|EGG53942.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila
           YIT 11841]
          Length = 117

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 6/105 (5%)

Query: 3   SFSHKKI-WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
             +  +I  E + ++ E    T   +A+  G++ ++++  +     G  R    + + +I
Sbjct: 1   MRTINQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYE-----GGTREVPYDILERI 55

Query: 62  LAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDS 106
                     L +               I  L          F  
Sbjct: 56  SNMFGCEPFILFEDNIQADNEIMATAFRISDLEDNDLKEIANFKD 100


>gi|326385716|ref|ZP_08207345.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209695|gb|EGD60483.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 135

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 5/94 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I   I  +     L+   LA + G+        +R       R P    +  +      +
Sbjct: 8   IGTRIAEVRRLKGLSQVQLAEELGISKPGLANYERGF-----RVPPASLVADLCEKHGVS 62

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
              LL    +       +  +  L       + G
Sbjct: 63  AGWLLLGEGAIFTPDLGQVHQRALATAWAYLTRG 96


>gi|323126408|gb|ADX23705.1| transcriptional regulator [Streptococcus dysgalactiae subsp.
          equisimilis ATCC 12394]
          Length = 83

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I   +D + +   +T   LA K G+   + +  +    +G  R+ +   I K+L    
Sbjct: 10 DDIHVTLDSLLKAKGITSKELAEKIGITEANLSILRTGKAKG-IRFGTLSKICKVLDCQP 68

Query: 67 ETICQLLDLPF 77
            + +      
Sbjct: 69 GDLLEYTPPTD 79


>gi|315647563|ref|ZP_07900665.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
 gi|315277002|gb|EFU40343.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
          Length = 184

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M    H  +   +  + E+  L+   +A   G+  T   + +R         PS  +++K
Sbjct: 1  MKPI-HLILAHNLKSLREQRKLSLDKVAELTGISKTMLGQIERGES-----SPSITTVWK 54

Query: 61 ILAATNETI 69
          I      + 
Sbjct: 55 IANGLKLSF 63


>gi|313888356|ref|ZP_07822026.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845636|gb|EFR33027.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 367

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 5/113 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           KI E I +  +   +T   LA    +   S +K +          P    + K+    N 
Sbjct: 3   KIGENILQKRKERGITQEELAEFMMVTKASVSKWETGQS-----HPDILLLPKLATFFNI 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           ++ +L+           +K            G    FD         ++   +
Sbjct: 58  SVDELIGYDPGLSSAQIQKFYIDLENRVSDEGMDSIFDDIKIKIKQYYSCFEL 110


>gi|307066675|ref|YP_003875641.1| hypothetical protein SPAP_0045 [Streptococcus pneumoniae AP200]
 gi|306408212|gb|ADM83639.1| hypothetical protein SPAP_0045 [Streptococcus phage PhiSpn_200]
          Length = 117

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
           +  + E   L+   +A++ G+   + +  +R    G       E I K        +  
Sbjct: 4  RLKELREELCLSVGQMAKETGVSQNTIHLYERG---GYPSIKQIEMIAKTYDVNPAWLVG 60

Query: 72 LLDLPFSD 79
           +D     
Sbjct: 61 WIDDEMMH 68


>gi|295094134|emb|CBK83225.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1]
 gi|295104068|emb|CBL01612.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 279

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + +  + + H +T + LA + G   ++ ++     + G+    STE + +I      
Sbjct: 9  NIRQRMQELMKEHKITQAQLATRIGSTESAISRF----VSGKTDKISTEHLLRIAKVFEV 64

Query: 68 T 68
          +
Sbjct: 65 S 65


>gi|295092258|emb|CBK78365.1| Predicted transcriptional regulators [Clostridium cf.
          saccharolyticum K10]
          Length = 278

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           I + +  + + H +T + LA + G   ++ ++     + G+    STE + +I      
Sbjct: 9  NIRQRMQELMKEHKITQAQLATRIGSTESAISRF----VSGKTDKISTEHLLRIAKVFEV 64

Query: 68 T 68
          +
Sbjct: 65 S 65


>gi|291531647|emb|CBK97232.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 136

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 8/131 (6%)

Query: 13  IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
           + +      LT    A   G+   +    ++     + R    E   K+       I  L
Sbjct: 7   VKKERRAKGLTQQQFADMLGVSLRTITNYEKGESYPKQR----EIYGKMAEILGVDINYL 62

Query: 73  LDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYA 132
           L           +K                         G + +   + E+       Y 
Sbjct: 63  LTENEEFYINANEKYGATGAQQAKALMQEV----TGLFAGGELDQDDMDEMMKAIQDAYW 118

Query: 133 IQTQDTRHKTQ 143
           I  +  R    
Sbjct: 119 IAKEKNRKYVS 129


>gi|291287525|ref|YP_003504341.1| plasmid maintenance system antidote protein, XRE family
          [Denitrovibrio acetiphilus DSM 12809]
 gi|290884685|gb|ADD68385.1| plasmid maintenance system antidote protein, XRE family
          [Denitrovibrio acetiphilus DSM 12809]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E +  + +   ++   LA + GL P + N+  +         PS E+  K       + 
Sbjct: 18 GETLAELLDEREMSQKELALRTGLSPKAINEIVKGKA-----LPSRETADKFEPIFGLSA 72

Query: 70 CQLLDLPFSDGRTTEKKEKEIP 91
             +D          + +K   
Sbjct: 73 NFWMDKSNRYMDYISEAKKRHE 94


>gi|251781615|ref|YP_002995916.1| putative transcriptional regulator [Streptococcus dysgalactiae
          subsp. equisimilis GGS_124]
 gi|242390243|dbj|BAH80702.1| putative transcriptional regulator [Streptococcus dysgalactiae
          subsp. equisimilis GGS_124]
          Length = 89

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
            I   +D + +   +T   LA K G+   + +  +    +G  R+ +   I K+L    
Sbjct: 16 DDIHVTLDSLLKAKGITSKELAEKIGITEANLSILRTGKAKG-IRFGTLSKICKVLDCQP 74

Query: 67 ETICQLLDLPF 77
            + +      
Sbjct: 75 GDLLEYTPPTD 85


>gi|302876393|ref|YP_003845026.1| helix-turn-helix domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302579250|gb|ADL53262.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 118

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 3   SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
             S K     + ++ +  +LT    A K G+    +   +R   +G     + + I K+ 
Sbjct: 1   MLSEK-----LKQIRKEMHLTQQEFADKLGISRGYYCDMERGRNKGT----NVKVISKLS 51

Query: 63  AATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGV 108
             T + +   +D      +          L+        G  +  +
Sbjct: 52  DVTGKPMEYFVDKDTELKQYDVLDSALDMLIDKGYVEDDGEINDNM 97


>gi|255103045|ref|ZP_05332022.1| DNA-binding protein [Clostridium difficile QCD-63q42]
          Length = 108

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
           E I+ + +   LT   L++ +G+   + +K       G  + P  E++  I    + T+
Sbjct: 3  LEKINELRKERGLTSEQLSKLSGVPKGTLDKIL----TGVTKDPKLETLKSIARVLDCTL 58

Query: 70 CQLLDLP 76
              D P
Sbjct: 59 DDFDDKP 65


>gi|254166541|ref|ZP_04873395.1| Helix-turn-helix domain protein [Aciduliprofundum boonei T469]
 gi|197624151|gb|EDY36712.1| Helix-turn-helix domain protein [Aciduliprofundum boonei T469]
          Length = 230

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 18/186 (9%)

Query: 10  WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69
              + +  E   ++   LAR  G+  +  +  +     GR + P   ++ K + A  E  
Sbjct: 24  GATMRKWREMFGISQQELARYLGMSSSVISDYE----SGRRKSPGVGTVRKFVNALIEID 79

Query: 70  CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNG 129
                       +T  +E  + +  FP   S   F   +       N          +  
Sbjct: 80  EAKGGEKVKQLSSTYGEEAILDMGEFPYQISVEDFMDLIDA--KITNEGEFKRQIYGYTI 137

Query: 130 IYAIQTQDT-----RHKTQDTSMLPL------YRKGDILILNSAIQVNCGDRLLIKPRT- 177
           + +++           +    S+         Y     ++   A  +     + + PR  
Sbjct: 138 LDSLKAILHYSSFDYLRVYGWSIDRALIFTGVYYGRSPMVAIRAHPLKPSAVVYVSPRKV 197

Query: 178 GDIVAK 183
            ++  K
Sbjct: 198 DELAIK 203


>gi|191636942|ref|YP_001986108.1| Helix-turn-helix motif [Lactobacillus casei BL23]
 gi|190711244|emb|CAQ65250.1| Helix-turn-helix motif [Lactobacillus casei BL23]
 gi|327380969|gb|AEA52445.1| hypothetical protein LC2W_0109 [Lactobacillus casei LC2W]
 gi|327384145|gb|AEA55619.1| hypothetical protein LCBD_0119 [Lactobacillus casei BD-II]
          Length = 373

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGI 46
           +   I    ++  +T   LA   G+   S +K +    
Sbjct: 4  NVGAVISAHRKQKGITQQALADFVGVSKASVSKWETGQS 42


>gi|157370471|ref|YP_001478460.1| XRE family transcriptional regulator [Serratia proteamaculans
          568]
 gi|157322235|gb|ABV41332.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 187

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M   S   + + +  +  +   + +  A   G+      + +R         P+  +++K
Sbjct: 1  MQELSG-HLAQTLRSLRSQRGWSLAQAAENTGVSKAMLGQIERGES-----SPTVATLWK 54

Query: 61 ILAATN 66
          I    N
Sbjct: 55 IATGFN 60


>gi|121607711|ref|YP_995518.1| XRE family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121552351|gb|ABM56500.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae
           EF01-2]
          Length = 171

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 6/127 (4%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M++    +I +A+        LT   LAR +GL  ++ N  +           S      
Sbjct: 1   MSTL--DEIGKAVRVRRTEMGLTQDLLARLSGLSRSTVNTVENRS----IANLSIAKAVA 54

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGV 120
           +L +   ++   ++   S  R      +         +                  T   
Sbjct: 55  LLESIGLSMNVNVNAARSSSRKNAPPSRSAMERAAATASISYGQAMTAKQLEVALLTGEA 114

Query: 121 PEIRSPH 127
           P    PH
Sbjct: 115 PPRIRPH 121


>gi|28379011|ref|NP_785903.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1]
 gi|28271849|emb|CAD64754.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1]
          Length = 120

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I  + ++ +LT   LA    +  ++    +        R  S + + K+      T
Sbjct: 3   IGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESD-----RRSVSNDDLIKLSDYFGVT 57

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
              LL    +     EK  K++        GS  +    
Sbjct: 58  TDYLLGKNGTPKWANEKDTKDLQDFLDANEGSMTYGGED 96


>gi|260060996|ref|YP_003194076.1| DNA-binding protein [Robiginitalea biformata HTCC2501]
 gi|88785128|gb|EAR16297.1| DNA-binding protein [Robiginitalea biformata HTCC2501]
          Length = 64

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          I  +    N T   LA   G+   + N  ++   +     P+   I ++    
Sbjct: 5  IRVLRAEKNWTQEQLASAIGVSRQTINAIEKEKFD--PSLPTAFRIARLFEKP 55


>gi|84684774|ref|ZP_01012674.1| hypothetical protein 1099457000245_RB2654_02659 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667109|gb|EAQ13579.1| hypothetical protein RB2654_02659 [Rhodobacterales bacterium
           HTCC2654]
          Length = 109

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I E + R+ +  N +   +A   G+      + ++    GR+R PS E + K+ +    
Sbjct: 2   EIGERLMRLRQSSNQSLQQVADAVGVSKAHVWELEK----GRSRNPSFELVRKLASHYGV 57

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGN 113
           +I  L            K  +    L           +  +     
Sbjct: 58  SIDVLTGTAPEPAPEDIKVGRMHRDLESLSKRDRAIVEELIASMKA 103


>gi|47564457|ref|ZP_00235502.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus
           G9241]
 gi|47558609|gb|EAL16932.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus
           G9241]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 5/99 (5%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           I + I    +   +T   LA   G+   S +K +         +P    +  + +  N +
Sbjct: 6   IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQS-----YPDITFLPLLASYFNIS 60

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSG 107
           I +L+           K         F            
Sbjct: 61  IDELICYTPQMEPEDIKDLYHRLAEAFSERPFDEVMIEC 99


>gi|327396552|dbj|BAK13973.1| putative HTH-type transcriptional regulator YdcN [Pantoea
          ananatis AJ13355]
          Length = 183

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S     I   + R  +R  LT + +AR+AG+  ++ ++ +          P  E+++ 
Sbjct: 1  MMSTPIDIIARGLVRERQRAGLTLAEVARRAGIAKSTLSQLEAGNGN-----PGIETLWS 55

Query: 61 ILAATNETI 69
          +  A N   
Sbjct: 56 LCVALNIPF 64


>gi|325678341|ref|ZP_08157963.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324109962|gb|EGC04156.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 497

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 42/164 (25%), Gaps = 10/164 (6%)

Query: 3   SFSHK--KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST---ES 57
             ++   +I   I  + E +  T   LA       T+    ++ G  G     S      
Sbjct: 1   MLTNDNNRIGNNIRSLREAYGETQQQLADAINTTRTNIINYEKHGY-GNPEIISAIAKRY 59

Query: 58  IFKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNT 117
           +  +          L  + +      +  E   P++    +     F++        ++ 
Sbjct: 60  MVSVYELLYCDFSGLKKINYDKNVFWKNLEIFFPIISSEKALKNSDFNTAYILHKKIYSK 119

Query: 118 V---GVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILI 158
                V  I       ++             S        D +I
Sbjct: 120 FKDSDVTNIWEECMDDFSECFDKYLDVITSDSNEN-LSYDDYVI 162


>gi|315574084|gb|EFU86275.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0309B]
          Length = 79

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++E I  +A++  L+   LA K  L   S    K+         P  E++ K+    
Sbjct: 3  LFERISYLAKKQGLSVFDLAEKLNLSRNSIYSWKK-------SSPKAETLEKVAEYF 52


>gi|315171648|gb|EFU15665.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX1342]
 gi|315582455|gb|EFU94646.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0309A]
          Length = 113

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++E I  +A++  L+   LA K  L   S    K+         P  E++ K+    
Sbjct: 3  LFERISYLAKKQGLSVFDLAEKLNLSRNSIYSWKK-------SSPKAETLEKVAEYF 52


>gi|313623977|gb|EFR94076.1| signal peptidase I [Listeria innocua FSL J1-023]
          Length = 180

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSL 198
                 SM+P     D +I+N   +VN  D ++ +   G    K +I   G +++  + 
Sbjct: 34  ILVDGISMMPTLHSDDRVIINRFGKVNRFDVIVFREADGKEYIKRVIGLPGDTVEYKAD 92


>gi|303326711|ref|ZP_07357153.1| BamHI control element [Desulfovibrio sp. 3_1_syn3]
 gi|302862699|gb|EFL85631.1| BamHI control element [Desulfovibrio sp. 3_1_syn3]
          Length = 83

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          K+   A+    E  +++   LA +AGL  T     ++       R  S  +I KI  A  
Sbjct: 13 KQFGAALGAKREALHISQEKLAERAGLHRTYIGGVEQG-----RRNLSLLNIVKIATALG 67

Query: 67 ETICQLL 73
              +  
Sbjct: 68 VNPEEFF 74


>gi|295133194|ref|YP_003583870.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda
          SM-A87]
 gi|294981209|gb|ADF51674.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda
          SM-A87]
          Length = 152

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 2  TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKI 61
          T  SH  I   I R+ E   +    LA + G+   S +  ++            E + K+
Sbjct: 17 TKTSH--IGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSE---HIEDEKLERVAKV 71

Query: 62 L 62
          L
Sbjct: 72 L 72


>gi|291084897|ref|YP_003495180.1| gp39 [Mycobacterium phage Ardmore]
 gi|262262733|gb|ACY39921.1| gp39 [Mycobacterium phage Ardmore]
          Length = 119

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           +W+ +  + ER   + + L+R++G+     ++ +       +RWP+     K+  A    
Sbjct: 50  VWQELRIIRERTGWSSAELSRESGVSAPYLSQLENG-----DRWPNATVTKKLAVALKVP 104

Query: 69  ICQLLDLPFSDGRTT 83
           +  L           
Sbjct: 105 VSVLERPAEQKNPAA 119


>gi|283787426|ref|YP_003367291.1| DNA binding protein [Citrobacter rodentium ICC168]
 gi|282950880|emb|CBG90557.1| putative DNA binding protein [Citrobacter rodentium ICC168]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          I +++ R  +R  L+ + +AR+AG+  ++ ++ +          PS E+++ +  A +  
Sbjct: 8  IAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGN-----PSLETLWSLCVALDIP 62

Query: 69 I 69
           
Sbjct: 63 F 63


>gi|257867799|ref|ZP_05647452.1| signal peptidase I [Enterococcus casseliflavus EC30]
 gi|257874126|ref|ZP_05653779.1| signal peptidase I [Enterococcus casseliflavus EC10]
 gi|257876690|ref|ZP_05656343.1| signal peptidase I [Enterococcus casseliflavus EC20]
 gi|257801882|gb|EEV30785.1| signal peptidase I [Enterococcus casseliflavus EC30]
 gi|257808290|gb|EEV37112.1| signal peptidase I [Enterococcus casseliflavus EC10]
 gi|257810856|gb|EEV39676.1| signal peptidase I [Enterococcus casseliflavus EC20]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 140 HKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
              +  SM    ++GD++++     +   D ++ +   G    K +I   G S+
Sbjct: 36  VPVEGNSMEGTLQQGDMVVIEKISPIQRFDVVVFQLPDGSTYIKRVIGLPGESV 89


>gi|227518306|ref|ZP_03948355.1| possible bacteriophage transcriptional regulator [Enterococcus
          faecalis TX0104]
 gi|227074243|gb|EEI12206.1| possible bacteriophage transcriptional regulator [Enterococcus
          faecalis TX0104]
          Length = 68

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
          ++E I  +A++  L+   LA K  L   S    K+         P  E++ K+    
Sbjct: 3  LFERISYLAKKQGLSVFDLAEKLNLSRNSIYSWKK-------SSPKAETLEKVAEYF 52


>gi|222081494|ref|YP_002540857.1| transcriptional regulator [Agrobacterium radiobacter K84]
 gi|221726173|gb|ACM29262.1| transcriptional regulator [Agrobacterium radiobacter K84]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 5/101 (4%)

Query: 4   FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
            + +++ E +    E    T +  A   G+  T+    ++       R      + ++  
Sbjct: 8   LTQEELGERLRLARESTGKTQADAAEAIGVARTTLVAMEKGQ-----RRVKIGEMQQLAR 62

Query: 64  ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFF 104
               T   L+           K  K       P + +    
Sbjct: 63  LYGTTANALMRKESVHIELVPKFRKLAENEERPVAEAAELM 103


>gi|171317225|ref|ZP_02906424.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|171097600|gb|EDT42435.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +  ++ E I R+     LT   L+R AG+  +  ++ +R     
Sbjct: 22 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANP 65


>gi|170699355|ref|ZP_02890402.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|170135727|gb|EDT04008.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 5  SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEG 48
          +  ++ E I R+     LT   L+R AG+  +  ++ +R     
Sbjct: 22 TPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANP 65


>gi|148557685|ref|YP_001265267.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148502875|gb|ABQ71129.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1]
          Length = 490

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 12  AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQ 71
            + R+ E  NL    LA   G+  +  N+ ++       R  +   + KI AA    +  
Sbjct: 33  RLKRLREERNLKQVELANALGISSSYLNQLEQNQ-----RPLTVPVLLKINAAFGIDVQL 87

Query: 72  LLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFD 105
             +   +   T  +            +       
Sbjct: 88  FSEDEEARLITELRDALAEGSESVSIAEIRELAM 121


>gi|86751307|ref|YP_487803.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          HaA2]
 gi|86574335|gb|ABD08892.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          HaA2]
          Length = 481

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 1  MTSFSHKK--IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
          M   S KK  +     R+ ++  L+ + +A   G+ P+  N  +R       R  + + +
Sbjct: 1  MAGESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQ-----RPVTAQIL 55

Query: 59 FKILAATNETICQLLDLPFSDGRTTEKKEKEIPL 92
           ++    +  +  L             +    PL
Sbjct: 56 LRLAETYDLDLRDLATADEDRFFAELNEIFSDPL 89


>gi|38049246|gb|AAR10417.1| putative repressor protein [Enterococcus faecium]
          Length = 63

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72
          I  + ++  +T   LA++ G+   + N  +    +     P+ E  FK+       + +L
Sbjct: 5  IKAIRKKLGITQEQLAKECGVVRQTINCIENDKYD-----PTLELAFKLSKMLKVKVDEL 59

Query: 73 LDLP 76
              
Sbjct: 60 FIYE 63


>gi|78189814|ref|YP_380152.1| XRE family transcriptional regulator [Chlorobium chlorochromatii
          CaD3]
 gi|78172013|gb|ABB29109.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii
          CaD3]
          Length = 100

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          I +      LT   LA K G +    +K +    E R       ++ KI+ 
Sbjct: 42 IQQARLEKGLTQEELAEKCGTNKGYISKIENNIKEVR-----VSTLQKIVE 87


>gi|72080368|ref|YP_287426.1| signal peptidase I [Mycoplasma hyopneumoniae 7448]
          Length = 146

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
               +  SM P  + G  + +N+  +    D ++       I+ K L+   G  +++
Sbjct: 30  LINVEGNSMFPTLKNGQQIFINNVKKPQRNDVVV-FKYKDKILIKRLVGIPGDKLEV 85


>gi|54019987|ref|YP_115543.1| signal peptidase I [Mycoplasma hyopneumoniae 232]
 gi|53987160|gb|AAV27361.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
 gi|144575241|gb|AAZ53403.2| signal peptidase I [Mycoplasma hyopneumoniae 7448]
          Length = 160

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDL 195
               +  SM P  + G  + +N+  +    D ++       I+ K L+   G  +++
Sbjct: 44  LINVEGNSMFPTLKNGQQIFINNVKKPQRNDVVV-FKYKDKILIKRLVGIPGDKLEV 99


>gi|326803357|ref|YP_004321175.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326651652|gb|AEA01835.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 73

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 5/41 (12%), Positives = 13/41 (31%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
            +  + +   L+   LA   G+   S +  +        +
Sbjct: 9  NRLKTIRKEKGLSQQALADMIGVSRNSISSIETGQFNPTAK 49


>gi|310766355|gb|ADP11305.1| hypothetical protein EJP617_16240 [Erwinia sp. Ejp617]
 gi|310766360|gb|ADP11310.1| hypothetical protein EJP617_16290 [Erwinia sp. Ejp617]
 gi|310768308|gb|ADP13258.1| hypothetical protein EJP617_35770 [Erwinia sp. Ejp617]
          Length = 129

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 11  EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
           E +  +  +H L+   +A   G+   S+ K +    +     PS + + KI  A + +  
Sbjct: 15  ERLFELRRQHGLSQQAMADAVGIHANSWKKYETGQAQ-----PSIDILKKIATALHVSTD 69

Query: 71  QLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
            LL          E   +   ++  P       
Sbjct: 70  FLLFDAHERVPEGELSLQFEAIIQLPEEEQNVV 102


>gi|295103367|emb|CBL00911.1| signal peptidase I, bacterial type [Faecalibacterium prausnitzii
           SL3/3]
          Length = 196

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 139 RHKTQDTSMLPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSI 193
             +    SM P     DI++L  +  +  G+          ++ K +I + G  I
Sbjct: 58  VLQVSGDSMYPTLNDKDIILLVKSNHIENGELC-GFYWQNKLLLKRIIGQPGDVI 111


>gi|293376903|ref|ZP_06623120.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|292644449|gb|EFF62542.1| DNA-binding protein [Turicibacter sanguinis PC909]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          MT      + E I +  +   L+   L+ K  +   +  K +           + ++I K
Sbjct: 1  MTM----TLGEKIKKYRQAGGLSQEQLSEKLSVSRQAVTKWESDKGIPDIH--NLQAIAK 54

Query: 61 ILA 63
          +  
Sbjct: 55 LFN 57


>gi|291619732|ref|YP_003522474.1| YdcN [Pantoea ananatis LMG 20103]
 gi|291154762|gb|ADD79346.1| YdcN [Pantoea ananatis LMG 20103]
          Length = 183

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 1  MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
          M S     I   + R  +R  LT + +AR+AG+  ++ ++ +          P  E+++ 
Sbjct: 1  MMSTPIDIIARGLVRERQRAGLTLAEVARRAGIAKSTLSQLEAGNGN-----PGIETLWS 55

Query: 61 ILAATNETI 69
          +  A N   
Sbjct: 56 LCVALNIPF 64


>gi|288933192|ref|YP_003437251.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|290511996|ref|ZP_06551364.1| transcriptional Regulator [Klebsiella sp. 1_1_55]
 gi|288887921|gb|ADC56239.1| transcriptional regulator, XRE family [Klebsiella variicola
          At-22]
 gi|289775786|gb|EFD83786.1| transcriptional Regulator [Klebsiella sp. 1_1_55]
          Length = 99

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 18/43 (41%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPS 54
          A++ + E   ++ + +A   G+   +  K ++   + R     
Sbjct: 31 ALNLLREELQMSQTEMAAAMGVKQPTIAKMEQADNDPRLSTLK 73


>gi|262043413|ref|ZP_06016538.1| HTH-type transcriptional regulator RdgA [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|259039239|gb|EEW40385.1| HTH-type transcriptional regulator RdgA [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
          Length = 70

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 9  IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
          +   +    +  N+T   LA   G+   + N+ +   I  R R+    S           
Sbjct: 3  LATRVKERRKELNMTQVALAELTGVSQQAINRIESGVIS-RPRYLLEISAALQCDPNWLL 61

Query: 69 ICQLLDLP 76
            Q  D  
Sbjct: 62 HGQPTDNK 69


>gi|229529008|ref|ZP_04418398.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
           12129(1)]
 gi|229332782|gb|EEN98268.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
           12129(1)]
 gi|327484506|gb|AEA78913.1| Transcriptional regulator yidN, Cro/CI family [Vibrio cholerae
           LMA3894-4]
          Length = 181

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 42/155 (27%), Gaps = 16/155 (10%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           +I   + ++ +   L+    A+  G+      + +R         P+  +++KI +    
Sbjct: 9   QIANQLKKLRKSRGLSLDTTAQLTGVSKAMLGQIERGES-----SPTIATLWKIASGLEA 63

Query: 68  TI-----CQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPE 122
           +           L        +   K   L  +        F+  +         +  P 
Sbjct: 64  SFSAFFANDPQLLSSERSFPDDPNMKVHTLFPYAADTGLEIFEITLLDHHQ---QMSSPH 120

Query: 123 IRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDIL 157
                  IY ++      K          +  + +
Sbjct: 121 ALGVIEYIYVLEG---VMKVFFDEQWHELQPREHI 152


>gi|229042877|ref|ZP_04190612.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676]
 gi|228726479|gb|EEL77701.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676]
          Length = 149

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          E +    E+ N + + LA K  +   S +K +         +PS E I  +      TI 
Sbjct: 5  ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKN-----YPSIEIIIHLSDLFGITID 59

Query: 71 QLLDLPFSDGRTTEKKEKEIPLLYF 95
          +LL       +   +  K +    +
Sbjct: 60 ELLRSDEELTQKIIEDSKRLAYPKW 84


>gi|226325615|ref|ZP_03801133.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758]
 gi|225205739|gb|EEG88093.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758]
          Length = 279

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          +I E I    +   LT   +A    +   + NK ++        +P    +  I      
Sbjct: 2  QIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNT-----YPDISLLPAIARLLKI 56

Query: 68 TICQLLDLPF 77
           + +L     
Sbjct: 57 DMNELFSFRE 66


>gi|225018996|ref|ZP_03708188.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum
          DSM 5476]
 gi|224948221|gb|EEG29430.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum
          DSM 5476]
          Length = 174

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 6/45 (13%), Positives = 17/45 (37%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRW 52
           +  ++    ++  L+   +A K G+   + +K +        R 
Sbjct: 22 NLGNSLFHARKKCGLSQEEVAEKLGVSRQTISKWETDETIPDIRQ 66


>gi|221210520|ref|ZP_03583500.1| transcriptional regulator, XRE family with cupin sensor
           [Burkholderia multivorans CGD1]
 gi|221169476|gb|EEE01943.1| transcriptional regulator, XRE family with cupin sensor
           [Burkholderia multivorans CGD1]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           ++ E I R+     LT   L+R AG+  +  ++ +R         P+    +++  A   
Sbjct: 25  RVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKAN-----PTIAVAWRLTNALGI 79

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSG-GFFDSGVFPTGNKWNTVGVPEIRSP 126
           T+ +L   P +          +IP L           +         +W  + +P   + 
Sbjct: 80  TLDELFSQPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPIDLAGKFEWYELTLPGGGAL 139

Query: 127 HNGIYAIQTQDTRHKTQDTSMLPL 150
            +  +   T++     Q T  +  
Sbjct: 140 VSNAHEPGTREHLTVLQGTMEIEA 163


>gi|241518608|ref|YP_002979236.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863021|gb|ACS60685.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 72

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
              +     +  + +   L+   LA +A +D T  +  +R         PS E + ++ 
Sbjct: 1  MEIRETFARNLRTLRQARKLSQEELAHRASVDRTYISSLERCVY-----SPSIEVLDRLA 55

Query: 63 AATNETICQ 71
          A        
Sbjct: 56 AVLGVEPAD 64


>gi|166031491|ref|ZP_02234320.1| hypothetical protein DORFOR_01188 [Dorea formicigenerans ATCC
          27755]
 gi|166028896|gb|EDR47653.1| hypothetical protein DORFOR_01188 [Dorea formicigenerans ATCC
          27755]
          Length = 69

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATN 66
          +K+   +  + E   L+        G+  ++    +      + R P    +  +    N
Sbjct: 2  EKLAIRLKELREERGLSQMEAGAALGVSRSTIAGYE-----TKGREPDVHMLITMADFYN 56

Query: 67 ETICQ 71
           ++  
Sbjct: 57 VSMDY 61


>gi|153217261|ref|ZP_01951025.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587]
 gi|124113716|gb|EAY32536.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 54/178 (30%), Gaps = 15/178 (8%)

Query: 8   KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
           K+ + I  +  R  +T    +++ GL  ++ +K +   I      P+ +++ K+      
Sbjct: 27  KLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQI-----SPTFQAMQKLAHGLQI 81

Query: 68  TICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPH 127
            + QL + P     T  +                              N   +P      
Sbjct: 82  DMPQLFEPPKKIVATGRRDITRKE----AGKPHPTQTYEHELLATQLSNKKMMPFKSRVR 137

Query: 128 NGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSAIQVNC---GDRLLIKPRTGDIVA 182
              +  +      +      L L  +G+++  +   +      GD +      G ++ 
Sbjct: 138 ARAF--EEYSDWVRHDGEEFL-LILEGEVMFYSEFYEPVNLVEGDSVYYDANMGHMLV 192


>gi|111220943|ref|YP_711737.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a]
 gi|111148475|emb|CAJ60147.1| Putative HTH-type transcriptional regulator [Frankia alni ACN14a]
          Length = 498

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 9   IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNET 68
           + + +    + H LT   LA + G D +  +K +     GR       ++  I      +
Sbjct: 20  VGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVE----SGRRAIHDISTLRHIARNLALS 75

Query: 69  ICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGF 103
              +   P +            P      +    +
Sbjct: 76  PEDVGLAPGAMADRRRDTGPRSPAAEQVAASQRAW 110


>gi|15668766|ref|NP_247565.1| hypothetical protein MJ_0586 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2496059|sp|Q58006|Y586_METJA RecName: Full=Uncharacterized HTH-type transcriptional regulator
           MJ0586
 gi|1591294|gb|AAB98578.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 170

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 2   TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPST 55
                +   + I    E+  L+   LA+K  +  ++  K +R+ +E   +    
Sbjct: 80  PML-REDYGDVIREAREKRGLSIEELAKKLKMKASTLQKFERYELEPNEKEIKI 132


>gi|326381708|ref|ZP_08203402.1| helix-turn-helix domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326199955|gb|EGD57135.1| helix-turn-helix domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 96

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 15/82 (18%)

Query: 2  TSFSHKKI----------WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNR 51
          T  + ++I            A+ +      +T   LA  +G+   + ++ +         
Sbjct: 6  THLTREQIALRDVRRRAFGAALAQARLTAGMTQDELAAASGVSRPTISRLELGTS----- 60

Query: 52 WPSTESIFKILAATNETICQLL 73
            S++ ++ +  A   T   + 
Sbjct: 61 SISSDRVWDLAEALGTTPADIY 82


>gi|325695675|gb|EGD37574.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK150]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 3  SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKIL 62
               KI   +  + E   +T   LA + G+   +    +          PS E   KI 
Sbjct: 1  MARESKIITNLKYIRESKGMTQQELADRIGMRRETILHLENNRYN-----PSLEMALKIA 55

Query: 63 AATN 66
             N
Sbjct: 56 QVFN 59


>gi|323139594|ref|ZP_08074638.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242]
 gi|322395144|gb|EFX97701.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 8  KIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNE 67
          ++   + R+ + +NL+ S L++++G+  +  ++ +R         P+  +I+++  A + 
Sbjct: 22 QLGATVQRLRKAYNLSLSELSQQSGVAKSIISQIERNETN-----PTLATIWRLAQALDV 76

Query: 68 T 68
          +
Sbjct: 77 S 77


>gi|312794333|ref|YP_004027256.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181473|gb|ADQ41643.1| helix-turn-helix domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 145

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 3   SFSHKKIWEA----IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESI 58
                KI +A    I ++ E    T + L   AG++PTS  +++R   E      S  ++
Sbjct: 1   MAKKNKIAKALGLKIKKLREEKGWTINQLGLYAGVNPTSIMRAERGESE-----LSLGNL 55

Query: 59  FKILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGG 102
            +I  A    +  L++         +++         P      
Sbjct: 56  LRIAKALKVDLNTLVEESMEQIVLGDEELVPNEKDKTPDIYEII 99


>gi|312881391|ref|ZP_07741188.1| transcriptional regulator, Cro/CI family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309371031|gb|EFP98486.1| transcriptional regulator, Cro/CI family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 176

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 10/110 (9%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 1   MTSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFK 60
           M   S   +   +  +     L+ S LA  AG+  ++ ++ ++         P+ +++++
Sbjct: 1   MEKPSLDILGRNLQSIRVSKGLSLSQLAHDAGIAKSNLSRIEQGSGN-----PTLDTLWR 55

Query: 61  ILAATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFP 110
           +    +        +   +        +   +           +     P
Sbjct: 56  LAIQLDVPF--GCLVASMNTAIGHDGVQAKLIEQGRDDPQVDAYWMSYAP 103


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.127    0.347 

Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,641,375,638
Number of Sequences: 14124377
Number of extensions: 63767900
Number of successful extensions: 414466
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 15387
Number of HSP's successfully gapped in prelim test: 7117
Number of HSP's that attempted gapping in prelim test: 389707
Number of HSP's gapped (non-prelim): 23372
length of query: 223
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 89
effective length of database: 2,950,127,112
effective search space: 262561312968
effective search space used: 262561312968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 78 (34.7 bits)